isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
6	chr17	-	2358	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5	157	5	-157	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	25	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACAAGAATCTTCTATC	NA	False	NA	NA	False	NA	NA	NA	45884192	45878857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
7	chr1	-	8097	45	NIC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	-25	1	intron_retention	FALSE	canonical	3	134	junction_13	462.096137608357	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGACGTCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71692384	71624680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
8	chr1	-	8399	46	FSM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	-79	-5	-54	1	multi-exon	TRUE	canonical	3	1514	junction_37	371.719226311845	2228	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGACGTCATTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	71692413	71624677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
11	chr1	-	8253	46	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	-5	-10	intron_retention	FALSE	canonical	0	0	junction_26	528.674569087638	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTACATTCCATGATGT	NA	False	NA	NA	False	NA	NA	NA	71692364	71624694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636832_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659974_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
12	chr14	+	3731	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	-9	1	-9	-1	multi-exon	FALSE	canonical	3	463	junction_11	40.4855688541514	977	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGGCCTCCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	32043966	32070107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
14	chr1	+	3208	1	Antisense	novelGene_ENSMUSG00000043716.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAGAAAGGTGGCGCA	NA	False	NA	NA	False	NA	NA	NA	16171410	16174618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_16171400_16174600
15	chr1	-	8114	45	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	6	1	intron_retention	FALSE	canonical	0	0	junction_43	475.066234507802	30	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGACGTCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71692314	71624680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688436_71690675_71690809_71691990
16	chr5	+	4087	27	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	775	8	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCCCCTCCTCCGCGGCCC	NA	False	NA	NA	False	NA	NA	NA	100509507	100564029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516210_100521281_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533987_100534063_100536389_100536470_100536925_100536966_100538617_100538687_100540247_100540490_100540722_100540875_100541061_100541221_100543657_100543760_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555136_100555887_100555973_100563961
17	chr5	+	2291	1	Antisense	novelGene_ENSMUSG00000008348.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTCTGTCACAAAATATACA	8649	False	NA	NA	False	NA	NA	NA	125463034	125465325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_125463000_125465300
21	chr9	+	5453	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	45	1	45	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	3692	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569672	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
23	chr19	+	6587	5	ISM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	419	5	17	-5	intron_retention	FALSE	canonical	3	2597	junction_1	104.128526350852	7	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	1486	False	NA	NA	False	NA	NA	NA	44282531	44295298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650
28	chr1	-	8093	45	FSM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	-65	15	-37	-9	multi-exon	FALSE	canonical	3	355	junction_21	441.858289425336	3	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACATTCCATGATGTG	NA	False	NA	NA	False	NA	NA	NA	71692396	71624693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
29	chr13	-	4469	8	Antisense	novelGene_ENSMUSG00000113690.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAGGGGAAACAAGGCACA	NA	False	NA	NA	False	NA	NA	NA	62324008	62277734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62277842_62317254_62317380_62317564_62317627_62318961_62320124_62320291_62320932_62321019_62321433_62321491_62321982_62322538
30	chr8	+	3447	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	-17	1000	-17	-116	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	14	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGGTACACACCTGATT	5032	False	NA	NA	False	NA	NA	NA	107329965	107395878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
31	chr13	+	5757	10	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	-34768	4219	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	13.7921072437181	21	67	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAACTTCATTTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	61768348	61895803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61768358_61796738_61796888_61803120_61803248_61803432_61803494_61804858_61805476_61805554_61806071_61848069_61848742_61891693_61892535_61892954_61893358_61893441
32	chr9	+	5282	28	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	764.299013585228	14	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569717	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577391_72584640_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
33	chr4	+	4988	16	Fusion	ENSMUSG00000067916.10_ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	387	3	NA	NA	-93252	79576	multi-exon	TRUE	non_canonical	0	0	junction_1	19.9555060627944	68	88	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146493231	147344612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146493332_146597241_146597335_146599367_146599500_146697966_146698060_146700005_146700119_146739355_146739414_146740256_146740384_146741834_146741973_146742638_146742710_146803500_146804705_146804957_146805189_146817994_146818509_146907047_146908370_147075346_147075790_147264940_147265192_147344514
34	chr11	+	721	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-40	-25798	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	136.534830720956	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGAGACTCAACTCAAAAA	NA	False	NA	NA	False	NA	NA	NA	4587706	4607587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4587823_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4607510
35	chr2	+	835	8	Fusion	ENSMUSG00000078896.12_ENSMUSG00000078906.10_ENSMUSG00000094475.8	novel	919	4	NA	NA	-5462	-719	multi-exon	TRUE	non_canonical	0	0	junction_1	455.551291943988	3	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACATAAACGAACACATACA	NA	False	NA	NA	False	NA	NA	NA	174846571	175444934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174846640_174855220_174855276_174858430_174858558_174858749_174858811_175319791_175319919_175320124_175320186_175444347_175444657_175444907
36	chr17	+	7326	16	NIC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	32.7234879966465	714	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATTTTCCTGCAGT	9229	False	NA	NA	False	NA	NA	NA	36152406	36170556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
37	chr11	+	7430	42	FSM	ENSMUSG00000020850.15	ENSMUST00000018449.11	7442	42	9	3	5	-3	multi-exon	FALSE	canonical	3	217	junction_5	157.019499238112	1376	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTTTTGTTTTCTTGCTG	NA	False	NA	NA	False	NA	NA	NA	75377650	75400270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75378018_75378450_75378620_75380567_75380733_75380823_75381043_75381154_75381368_75381466_75381593_75381672_75381779_75382268_75382460_75382584_75382705_75382787_75382978_75383088_75383209_75383322_75383458_75383804_75383935_75384176_75384374_75384639_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
38	chr9	+	5368	28	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-32	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	907.582250728899	3460	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569687	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649932_72650043_72650821_72650919_72653688_72653762_72654407
39	chr1	-	3011	22	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	25	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGTAATGAAAATGAGAACA	3240	False	NA	NA	False	NA	NA	NA	87647422	87609208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87609290_87609406_87609479_87611462_87611589_87619346_87619449_87623049_87623157_87625069_87625266_87625831_87625952_87626748_87626845_87627359_87627500_87628880_87628990_87629135_87629225_87630838_87630921_87633654_87633745_87635816_87635931_87637337_87637421_87638784_87638870_87639748_87639902_87640913_87641010_87642757_87642814_87642996_87643034_87645409_87646005_87647040
40	chr9	+	5439	29	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-27	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	896.926973001682	1	110	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569692	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617826_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649932_72650043_72650821_72650919_72653688_72653762_72654407
42	chr9	+	5481	30	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	72	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	738.958791222387	3337	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569843	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72570393_72570593_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
43	chr9	-	3469	20	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6357	37288	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	517	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGAGGAGGAGGAGCCG	5014	False	NA	NA	False	NA	NA	NA	21316659	21279249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21314431_21314798_21315355_21315486_21315989
44	chr7	-	1272	4	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	11	7534	11	-128	intron_retention	FALSE	canonical	3	5111	junction_3	390.924545149061	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAATTTTAAATGCTCT	NA	False	NA	NA	False	NA	NA	NA	110682213	110678672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_110679530_110680105_110680172_110680713_110680841_110681991
45	chr3	-	1774	3	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-16	-32	intron_retention	FALSE	canonical	3	860	junction_2	40	40	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATAAAGACTTGGTACTT	NA	False	NA	NA	False	NA	NA	NA	87965818	87963858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_87965339_87965436_87965546_87965633
46	chr2	-	2711	17	NNC	ENSMUSG00000027071.15	novel	1764	13	NA	NA	-9647	-5210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	445	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTAGGGATGCGGGGGAAG	9573	False	NA	NA	False	NA	NA	NA	84877453	84867607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84867671_84868135_84868313_84868695_84868881_84870215_84870322_84870606_84870798_84870900_84871133_84871261_84871367_84871451_84871580_84871775_84871999_84872584_84872658_84873034_84873173_84873296_84873346_84874662_84874791_84875751_84875923_84876025_84876115_84876594_84876782_84876987
49	chr11	-	5175	1	FSM	ENSMUSG00002076984.1	ENSMUST00020182653.1	101	1	-1890	-3184	-1890	3184	mono-exon	FALSE	NA	NA	NA	NA	NA	4	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCTTTTTAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	106675987	106670812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106670800_106676000
50	chr3	-	5390	12	Intergenic	novelGene_3113	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGGTGATCTTCCGGGC	NA	False	NA	NA	False	NA	NA	NA	41571285	41510170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41510253_41535627_41535708_41543368_41543456_41546115_41546273_41548198_41548389_41551048_41551260_41554454_41554631_41555807_41555916_41558901_41559426_41564236_41564354_41567555_41569795_41569866
52	chr9	-	2438	24	Antisense	novelGene_ENSMUSG00000032604.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.203931119992323	2360	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAAAGAAACTTTGGGC	NA	False	NA	NA	False	NA	NA	NA	108393135	108385266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108385394_108385576_108385729_108386074_108386186_108386347_108386423_108386638_108386702_108387290_108387354_108387490_108387546_108388335_108388407_108388526_108388614_108388726_108388816_108389679_108389778_108389893_108389976_108390056_108390166_108390262_108390394_108390482_108390574_108390863_108391005_108391090_108391177_108391260_108391406_108391486_108391592_108391739_108391834_108391943_108392071_108392163_108392232_108392304_108392429_108392991
53	chr4	+	5892	5	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	32	5182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	48.3599782878363	559	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATTTTTGAAGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	145136867	145181508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145159036_145159152_145173259_145173342_145176036
56	chr15	-	3423	29	ISM	ENSMUSG00000034022.9	ENSMUST00000230157.2	4410	37	-8	1648	-8	-193	5prime_fragment	FALSE	canonical	3	484	junction_17	42.8104954468897	6	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGAGGTCACGTGCCGT	NA	False	NA	NA	False	NA	NA	NA	76491719	76481656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
57	chr10	-	6340	5	Antisense	novelGene_ENSMUSG00000038587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1039	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGCAGAGGGGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	4309469	4211109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_4211205_4216328_4216667_4263740_4263857_4303140_4307938_4308475
59	chr4	-	4311	8	Intergenic	novelGene_2140	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	346	66	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGTACAAGGAGAATGCT	NA	False	NA	NA	False	NA	NA	NA	147671110	147395015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147395067_147447266_147447361_147576876_147577002_147639756_147639861_147661356_147661585_147665696_147665825_147667289_147667440_147667679
60	chr14	-	3429	18	Antisense	novelGene_ENSMUSG00000021913.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCGCTGTATCAATTACC	NA	False	NA	NA	False	NA	NA	NA	32066900	32044001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_32044073_32045834_32045905_32047750_32047952_32048931_32049105_32054135_32054240_32054441_32054557_32054702_32054859_32055664_32055811_32057288_32057381_32059396_32059577_32059709_32059838_32061160_32061341_32061856_32062017_32062606_32062702_32063155_32063286_32063994_32065284_32066664_32066743_32066839
61	chr9	+	5196	27	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-24	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	573.004989032051	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569695	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569911_72584606_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
62	chr4	+	4266	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43233	3327	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	132.871366366121	106	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTGTGTGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	147533640	147601270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147591995_147592098_147595209_147595337_147596801_147597042_147597711
63	chr19	+	5137	27	NIC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-25	3	intron_retention	FALSE	canonical	3	166	junction_4	641.523782344512	47	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	605	False	NA	NA	False	NA	NA	NA	10582925	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
66	chr19	+	5432	25	NIC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-1	2	intron_retention	FALSE	canonical	3	166	junction_4	655.787491779921	40	41	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTATTGGTCTCTGCTT	665	False	NA	NA	False	NA	NA	NA	10582985	10607185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10605229_10605788_10605913_10606442
68	chr4	+	4828	14	Fusion	ENSMUSG00000067916.10_ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	387	3	NA	NA	-93315	79576	multi-exon	TRUE	non_canonical	0	0	junction_1	21.3375242431825	4	106	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146493168	147344612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146493332_146597241_146597335_146697966_146698060_146739355_146739414_146740256_146740384_146741834_146741973_146742638_146742710_146803500_146804705_146804957_146805191_146818001_146818487_146907020_146908370_147075346_147075527_147264655_147265192_147344514
69	chr15	+	3646	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	224.467626965573	51	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-39	True	NA	NA	NA	101982353	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687_102005503_102005564
70	chr10	+	6484	6	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-23907	-5	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	634.721797325411	747	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATATTCACTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	4192472	4309465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4192703_4207397_4207470_4216387_4216669_4263742_4263858_4303141_4307940_4308477
71	chr11	-	4906	12	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	-2	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1203.92364739643	226	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9658	False	NA	NA	False	NA	NA	NA	106679316	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106671621_106671706_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
72	chr5	+	4316	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	2	intron_retention	FALSE	canonical	0	0	junction_5	687.180104553202	465	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108208601	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
73	chr11	+	4965	23	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	5	-218	intron_retention	FALSE	canonical	3	2354	junction_10	208.321296070983	55	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332187	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
74	chr11	-	5695	8	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	3830	junction_4	168.393004847686	200	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9654	False	NA	NA	False	NA	NA	NA	106679320	106671180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677901_106679098
75	chr9	+	5109	27	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	928.829228226104	4	76	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGATTTTAAAAACAAAGCT	NA	False	NA	NA	False	NA	NA	NA	72569763	72657116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577234_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644195_72646338_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
76	chr11	-	5563	35	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-9	intron_retention	FALSE	canonical	3	1094	junction_3	172.605656925746	1092	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGCCATCCATTCCTCT	NA	False	NA	NA	False	NA	NA	NA	98915016	98883777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
77	chr19	+	5005	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	3099	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1479	False	NA	NA	False	NA	NA	NA	44282524	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291618_44291655
78	chr3	-	1863	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	-22	25	7	-25	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	34	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATAAAGCATCTCTGGGG	NA	False	NA	NA	False	NA	NA	NA	108352507	108333952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
79	chr10	+	6327	6	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-12431	-1	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	627.571382394067	1526	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCACTGTTTTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	4203948	4309469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4203967_4207397_4207470_4216336_4216669_4263742_4263858_4303141_4307940_4308477
80	chr9	+	5387	29	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	11	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	752.567105794885	1	103	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACAAAGCTGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	72569730	72657123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650819_72650919_72653688_72653762_72654407
81	chr15	+	3914	8	Antisense	novelGene_ENSMUSG00000092014.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCAGGGTTCTAGAGGAA	5231	False	NA	NA	False	NA	NA	NA	99676350	99717828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99679174_99681402_99681535_99692289_99692403_99694624_99694679_99699989_99700094_99704303_99704451_99705537_99705627_99717376
83	chr19	+	4926	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	13	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1481	False	NA	NA	False	NA	NA	NA	44282526	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291564_44291678
84	chr4	+	4480	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	1433	multi-exon	FALSE	non_canonical	0	0	junction_2	68.825753719084	2	107	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATCATTACCCAAATCTG	NA	False	NA	NA	False	NA	NA	NA	147216501	147671088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216568_147216646_147216818_147217303_147217441_147447267_147447362_147576878_147577009_147639766_147639886_147665685_147665826_147667290_147667467_147667641
85	chr5	-	7134	13	FSM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	39	6	39	-6	multi-exon	FALSE	canonical	3	299	junction_1	51.9975293216472	1128	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAACTCACTGTGTGGTC	5457	False	NA	NA	False	NA	NA	NA	148336675	148264225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
86	chr17	+	6737	17	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-67	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	49.7919107385929	61	38	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATTTTCCTGCAGTG	9323	False	NA	NA	False	NA	NA	NA	36152500	36170557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159680_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354_36169332_36169830
91	chr5	+	4257	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	781.712932843637	1	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTAATGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108208603	108256869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
92	chr8	+	2700	13	Antisense	novelGene_ENSMUSG00000031696.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACGGCACATTTCTACC	NA	False	NA	NA	False	NA	NA	NA	85987031	86013057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85987934_85988618_85988768_85989939_85990183_85990775_85990952_85997320_85997445_86000100_86000254_86001445_86001657_86005332_86005482_86005588_86005686_86007864_86007973_86008467_86008551_86010618_86010836_86012969
93	chr4	-	2709	17	FSM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	80	527	6	-527	multi-exon	FALSE	canonical	2	1390	junction_12	381.614124271823	67	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCCCTGGGGGAGGGGG	9821	False	NA	NA	False	NA	NA	NA	43000427	42980489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
94	chr1	-	4760	32	Antisense	novelGene_ENSMUSG00000026615.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.491340200378317	150	9	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTACTCGTCGGGCTGC	NA	False	NA	NA	False	NA	NA	NA	185160548	185095381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_185095440_185099726_185099813_185101773_185101872_185103083_185103241_185105112_185105261_185106318_185106409_185110970_185111093_185111736_185111933_185113994_185114169_185117073_185117307_185118441_185118526_185119253_185119314_185126557_185126669_185128224_185128364_185129256_185129463_185130588_185130702_185131416_185131532_185133501_185133864_185139155_185139387_185139682_185139948_185142378_185142434_185143354_185143560_185143895_185143970_185145345_185145431_185145644_185145746_185146524_185146681_185147948_185148144_185150403_185150581_185152321_185152491_185156511_185156584_185160045_185160110_185160189
97	chr13	+	2620	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	1	367	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	114.499606986225	2	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGAATTCATAAAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	62277716	62321600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62319461_62319540_62319941_62320191
98	chr1	+	4949	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	-52	9	-52	-9	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	1885	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095188	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
99	chr5	+	4303	16	NIC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	-8	2	intron_retention	FALSE	canonical	0	0	junction_4	677.372492306363	163	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108213568	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108217027_108217230_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
100	chr14	+	2112	7	NNC	ENSMUSG00000079271.5	novel	1761	5	NA	NA	-37851	-39	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	7.69018133003955	232	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAAATGTCTTTCAGGAA	NA	False	NA	NA	False	NA	NA	NA	41709054	41754959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41709388_41744357_41744461_41746951_41747062_41747789_41747953_41748897_41749030_41749709_41749892_41753870
101	chr11	+	4204	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-7	-218	intron_retention	FALSE	canonical	3	2354	junction_12	203.507878464747	676	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332195	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
102	chr1	-	6330	18	FSM	ENSMUSG00000026235.15	ENSMUST00000027451.13	6328	18	1	-3	1	3	multi-exon	FALSE	canonical	3	112	junction_15	30.5422731607683	741	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTGTCTTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	77491724	77343818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
103	chr1	+	6253	28	Intergenic	novelGene_415	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	262	11	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCTCCAATCCCGCCGA	NA	False	NA	NA	False	NA	NA	NA	93333667	93373408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_93335984_93336092_93336220_93336410_93336525_93336669_93336859_93340084_93340228_93341211_93341350_93341550_93341653_93342532_93342689_93344222_93344365_93344896_93345120_93345192_93345412_93347790_93348013_93348808_93348938_93349064_93349150_93350983_93351098_93351489_93351596_93352987_93353129_93355279_93355359_93355869_93355973_93357097_93357207_93357818_93358029_93358678_93358890_93359026_93359243_93364817_93365034_93365949_93366106_93368401_93368517_93369910_93369976_93373301
104	chr3	+	7980	17	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	56	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	300.989818920425	1817	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCATCTTGTGGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	63883582	63930000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053_63924540_63924608
105	chr1	+	8106	46	Antisense	novelGene_ENSMUSG00000026193.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	88	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCACAACTTGAGCGGGCG	9171	False	NA	NA	False	NA	NA	NA	71624680	71691912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_71625445_71625990_71626100_71629250_71629364_71629925_71630059_71632232_71632395_71634822_71634962_71636439_71636907_71637532_71637626_71638376_71638554_71638761_71638849_71639445_71639628_71640360_71640446_71641466_71641659_71642820_71643085_71644124_71644243_71645043_71645202_71645863_71646029_71647064_71647180_71648571_71648844_71650089_71650178_71651626_71651810_71652921_71653195_71654518_71654716_71657741_71657825_71658542_71658719_71659890_71659979_71663236_71663504_71665132_71665410_71666324_71666516_71667214_71667306_71667566_71667696_71668474_71668651_71668823_71669003_71671199_71671321_71676409_71676555_71677615_71677747_71679452_71679607_71680313_71680488_71681110_71681291_71682118_71682310_71684704_71684862_71687167_71687306_71688352_71688485_71689720_71689861_71690679_71690811_71691793
106	chr15	+	8983	5	Antisense	novelGene_ENSMUSG00000009575.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	371	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGGCTAACAGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	103099977	103123719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_103108218_103109226_103109329_103113918_103114105_103121497_103121681_103123447
107	chr9	+	5335	30	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.947650556986	2	115	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569719	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577291_72577361_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
108	chr14	+	4620	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	-55	-47	-55	47	multi-exon	FALSE	canonical	3	890	junction_17	126.92017018583	2466	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGGATTTTATTCAGA	1776	False	NA	NA	False	NA	NA	NA	121148580	121185458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
109	chr9	+	5433	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	65	1	-27	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	1	115	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569692	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
110	chr1	+	4849	32	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	557.608933935778	1612	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095254	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129290_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
111	chr19	+	4962	26	NIC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	4	-19	intron_retention	FALSE	canonical	0	0	junction_18	896.209573704722	2	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGTAGAATCTAAGAAGA	634	False	NA	NA	False	NA	NA	NA	10582954	10607164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
112	chr19	-	5378	21	NIC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	-32	-2	intron_retention	FALSE	canonical	0	0	junction_16	316.586338934579	1978	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGTGTTTTGTCAAT	8707	False	NA	NA	False	NA	NA	NA	60779128	60749556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
114	chr11	-	4177	26	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACGTCCGAGTGAGGGCG	NA	False	NA	89	True	NA	NA	NA	72342373	72332144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72332402_72332503_72332598_72333223_72333308_72333393_72333468_72333568_72333675_72334296_72334476_72334564_72334733_72334826_72334945_72335505_72335804_72336001_72336110_72336430_72336556_72336715_72336888_72336983_72337082_72337795_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
115	chr7	-	3613	21	NIC	ENSMUSG00000005610.18	novel	3548	22	NA	NA	11	0	intron_retention	FALSE	canonical	3	147	junction_20	1647.70090125605	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680779_110681991
116	chr9	+	5364	28	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-2	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	765.041223774297	1	89	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAAAGCTGTGGCTCC	NA	False	NA	NA	False	NA	NA	NA	72569717	72657124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593406_72617752_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
117	chr2	+	5322	9	NIC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	-2	intron_retention	FALSE	canonical	3	3726	junction_1	2275.62749587888	755	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGGTTTTATCATTT	7481	False	NA	NA	False	NA	NA	NA	75489610	75499749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_75489668_75491809_75491933_75492014_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
119	chr10	+	5955	3	FSM	ENSMUSG00000038587.11	ENSMUST00000239373.2	5956	3	0	1	0	-1	multi-exon	FALSE	canonical	3	114	junction_1	774.5	1471	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCACTGTTTTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	4284544	4309469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_4284710_4303141_4307940_4308477
120	chr5	+	4421	18	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-6	intron_retention	FALSE	canonical	0	0	junction_6	748.389639093911	17	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGAGCTAATGAGTTT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108215325_108215439_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
121	chr7	-	3741	22	NIC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	-1	0	intron_retention	FALSE	canonical	3	147	junction_21	1306.04265608024	6	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682227	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680779_110681991
122	chr7	-	3697	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	-1	intron_retention	FALSE	non_canonical	0	0	junction_21	1335.05458796053	2	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGTTGTACATGACTTC	NA	False	NA	NA	False	NA	NA	NA	110682213	110671139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680782_110682023
123	chr10	+	8325	30	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	525	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_29	108.281330852447	747	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAGACTCAAGATTGCAT	NA	False	NA	NA	False	NA	NA	NA	127932773	127965165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456_127964205_127964244
124	chr19	+	4307	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	155	-3	-105	3	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	3514	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	525	False	NA	NA	False	NA	NA	NA	10582845	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
125	chr14	-	3367	14	Antisense	novelGene_ENSMUSG00000021806.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGCCCGCCAGACTCCA	8654	False	NA	NA	False	NA	NA	NA	19852610	19801356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_19801634_19802308_19802616_19813731_19813967_19818277_19819004_19828061_19828212_19828803_19829049_19829601_19829804_19831200_19831431_19839734_19839882_19840344_19840475_19841575_19841717_19847228_19847349_19848461_19848712_19852403
126	chr10	-	5053	16	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	10	438	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	174.091342563482	1807	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGTTTTCAAGACAG	NA	False	NA	NA	False	NA	NA	NA	62438050	62415591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62417649_62417745_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
128	chr10	-	6526	10	FSM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_5	44.0656076524286	782	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATACTTTGCAGTTTGTT	4474	False	NA	NA	False	NA	NA	NA	117212875	117180577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
130	chr16	+	1887	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATCTCCCGCATGCGCAT	NA	False	NA	NA	False	NA	NA	NA	45973372	45975259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45973400_45975300
131	chr5	+	4473	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-1	intron_retention	FALSE	canonical	0	0	junction_5	700.07462771836	342	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTAATGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217390_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
132	chr5	+	4526	17	NNC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	-8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	746.056371445885	55	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108213568	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108217027_108217390_108221172_108221321_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
133	chr5	+	4180	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-10	intron_retention	FALSE	canonical	0	0	junction_4	742.994321983688	629	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTAAAAGAGCTAATGA	NA	False	NA	NA	False	NA	NA	NA	108208601	108256860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
135	chr7	-	3627	21	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	59	0	59	0	3prime_fragment	FALSE	canonical	3	1102	junction_8	1132.63140517999	15	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682165	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
136	chr19	-	5113	24	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24162	-6529	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGCGCAGAGGATCACGG	NA	False	NA	NA	False	NA	NA	NA	10607180	10582924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10605229_10605788
137	chr11	+	4056	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-7	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	555.551234720975	722	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332195	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337855_72338003_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
138	chr5	+	4264	19	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	1701	-216	intron_retention	FALSE	canonical	0	0	junction_5	816.465069599761	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108215323	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108215439_108217027_108217230_108220587_108220656_108221172_108221321_108226731_108226843_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
139	chrX	+	2402	11	Antisense	novelGene_ENSMUSG00000025151.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCTGGCTGGTGGGCGGA	NA	False	NA	NA	False	NA	NA	NA	93579084	93584062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93579286_93579467_93579850_93580477_93580595_93580899_93580969_93581151_93581193_93581282_93581361_93581578_93581672_93581789_93581872_93582052_93582114_93582211_93582890_93583462
140	chr7	+	3445	19	ISM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	35	5759	-6	-1131	intron_retention	FALSE	canonical	0	0	junction_2	199.215281529961	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAAAGGCCGGGGCATTG	7233	False	NA	NA	False	NA	NA	NA	109617515	109650057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802
141	chr7	-	3756	22	NNC	ENSMUSG00000005610.18	novel	3548	22	NA	NA	11	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2268.49140836841	6	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671507_110671563_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680380_110680695_110680809_110682047
142	chr5	-	4475	18	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23745	45630	intron_retention	FALSE	non_canonical	0	0	junction_1	0	327	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256651	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108217027_108217390_108220436_108220654_108221170_108221321_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251990_108252130_108252184_108252290_108252396_108254452
143	chr7	-	3723	21	NIC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	3	102	junction_19	1345.03087232227	9673	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680713_110680841_110681991
144	chr11	-	5909	31	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	-12	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	273.731094730252	38	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTAGAATTGCAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	86648339	86585478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593587_86594516_86594601_86594696_86594829_86594905_86595056_86595465_86595552_86595999_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
145	chr7	-	4001	21	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	15	1203	intron_retention	FALSE	non_canonical	0	0	junction_1	2015.65129114636	13	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGTTTTTTCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	110682209	110669935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110670013_110670819_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680713_110680841_110681991
146	chr9	+	5330	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	126	43	-10	-43	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	2	110	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATTCCACAAATAAAGTT	NA	False	NA	NA	False	NA	NA	NA	72569753	72657091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
147	chr9	+	4671	22	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	852.209360222471	12	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569730	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584613_72628848_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
148	chr19	-	4977	26	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24155	-6554	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACACGTTGCAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	10607173	10582949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10587153_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601001_10602528_10602697_10603261_10603354_10603954_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439
149	chr11	+	4043	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-10	-224	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	553.594037540146	7	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTATATGACGCCAATCT	NA	False	NA	NA	False	NA	NA	NA	72332170	72342370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338608_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
150	chr5	+	5303	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	1191	intron_retention	FALSE	canonical	0	0	junction_4	626.478354685051	88	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAGGCATTTGATATGT	NA	False	NA	NA	False	NA	NA	NA	108208601	108258061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
151	chr14	+	4434	25	NIC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	1	39	junction_1	253.201336226069	2162	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGCATTACTTCATTA	1834	False	NA	NA	False	NA	NA	NA	121148638	121185411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_121148756_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
152	chr9	+	5733	19	FSM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	353	5	13	3	multi-exon	FALSE	canonical	3	256	junction_1	32.471877671397	1306	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTATGTTGCTTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	109760880	109913018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
153	chr9	+	1667	5	ISM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	39103	7	382	-7	3prime_fragment	FALSE	canonical	3	614	junction_1	57.2117776336306	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAACTGTATTGATTTG	531	False	NA	NA	False	NA	NA	NA	103221516	103227620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
154	chr5	+	4610	19	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4931	2	intron_retention	FALSE	canonical	1	1	junction_2	767.897114459393	3	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108208608	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108220436_108220656_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
155	chr1	+	3235	13	NIC	ENSMUSG00000026276.21	novel	477	6	NA	NA	4	-527	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	275.56259371612	1097	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406948	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93407037_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
156	chr4	-	6731	4	Fusion	ENSMUSG00000066000.13_ENSMUSG00000062518.8	novel	2594	5	NA	NA	-46	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	88.6002257333467	21	82	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147787056	147696396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147698477_147698575_147702956_147725368_147725463_147786879
157	chr4	+	5125	16	Fusion	ENSMUSG00000067916.10_ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	1275	6	NA	NA	-216452	151	multi-exon	TRUE	non_canonical	0	0	junction_1	98.3984191381594	3	175	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTCACATTATAGGAT	NA	False	NA	NA	False	NA	NA	NA	146370031	147265187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146370163_146501029_146501167_146597241_146597335_146695454_146695586_146697966_146698060_146700005_146700119_146739308_146739414_146740256_146740384_146741834_146741973_146742638_146742710_146803500_146804788_146805042_146805189_146817994_146818514_146907043_146908366_147075346_147075527_147264655
158	chr7	-	3630	21	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	13	-1	intron_retention	FALSE	canonical	0	0	junction_11	1665.56402683896	12	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGTTGTACATGACTTC	NA	False	NA	NA	False	NA	NA	NA	110682211	110671139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676489_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
160	chr11	-	1200	1	FSM	ENSMUSG00000049489.6	ENSMUST00000059468.6	1224	1	24	0	24	0	mono-exon	FALSE	NA	NA	NA	NA	NA	684	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTCTGCCTTATGGTA	6619	False	NA	NA	False	NA	NA	NA	78642531	78641331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78641300_78642500
161	chr5	+	4033	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4937	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	677.031441908966	28	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTTTTCTTCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	108208602	108256877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
162	chr5	+	4038	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4935	-216	intron_retention	FALSE	non_canonical	0	0	junction_3	727.824401469888	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208604	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108221172_108221264_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
163	chr19	+	4063	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	canonical	1	45	junction_23	666.656313652353	155	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCTTATTGGTCTCTG	670	False	NA	NA	False	NA	NA	NA	10582990	10607182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604947_10605023_10605125_10605229_10605788_10605913_10606442
164	chr7	-	3544	21	NNC	ENSMUSG00000005610.18	novel	3548	22	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_2	1657.94874091451	24	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682223	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673140_110673367_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
165	chr5	-	4408	19	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45649	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATACTTTTTAGTGGCACA	NA	False	NA	NA	False	NA	NA	NA	108256654	108208582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108217027_108217360_108217533_108217564_108220436_108220654_108221170_108221328_108228785_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
167	chr4	+	3762	7	Intergenic	novelGene_2098	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_3	170.09482649393	1	45	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146426575	146806008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426715_146428065_146428160_146797295_146797381_146800388_146800518_146802050_146803119_146803370_146805016_146805406
168	chr19	-	4406	27	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTCCTTTTATCTCCCA	NA	False	NA	NA	False	NA	NA	NA	10607175	10583856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10584356_10585154_10585271_10585611_10585835_10587153_10587192_10588065_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599868_10600703_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439
169	chr11	-	5142	36	NNC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	322.319937392673	1032	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGCCATCCATTCCTCT	NA	False	NA	NA	False	NA	NA	NA	98915016	98883777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896967_98897845_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
170	chr11	+	3995	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	66	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	556.301492358235	2	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332268	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338943_72339089_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
171	chr7	-	4990	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	1198	intron_retention	FALSE	non_canonical	0	0	junction_5	1337.95832887124	3	127	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGACCTGGGTTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	110682213	110669940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674149_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
175	chr11	-	6192	32	FSM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	15	312	15	-8	multi-exon	FALSE	canonical	3	813	junction_25	122.673691341487	2	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAAATAACATGTAGAAT	NA	False	NA	NA	False	NA	NA	NA	86648376	86585488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
176	chr19	+	4134	28	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	666.707562531654	105	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	641	False	NA	NA	False	NA	NA	NA	10582961	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442_10606893_10606949
177	chr7	-	3574	21	NNC	ENSMUSG00000005610.18	novel	3548	22	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	1671.23123699265	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680833_110682084
178	chr5	-	3855	16	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	350	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256654	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108226729_108226839_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
179	chr7	-	3643	21	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	non_canonical	0	0	junction_2	2126.64445782552	10	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673239_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674659_110674793_110674920_110675486_110675601_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
180	chr11	+	4002	25	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	9	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	742.404366269189	77	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332211	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339794_72339874_72340001_72340086_72340174_72340827_72340921_72341451_72341601_72341702
181	chr11	+	1689	4	Antisense	novelGene_ENSMUSG00000098955.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6502	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACGCCCTGCGAGA	11	True	NA	NA	False	NA	NA	NA	120236519	120238689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120237362_120237464_120237649_120237740_120238178_120238463
182	chr19	+	4947	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	10	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	1090.18559887755	2	64	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	1479	False	NA	NA	False	NA	NA	NA	44282524	44295298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289835_44291481
186	chr11	-	6167	32	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	-29	34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	274.328843281168	13	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACCAGAATCATGGTTT	NA	False	NA	NA	False	NA	NA	NA	86648356	86585446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617084_86617279_86621036_86621211_86621543_86621639_86623354_86623493_86624401_86624671_86627896_86628105_86648073
187	chr1	-	6326	18	FSM	ENSMUSG00000026235.15	ENSMUST00000027451.13	6328	18	5	-3	0	3	multi-exon	TRUE	canonical	3	112	junction_15	30.5422731607683	745	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTGTCTTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	77491720	77343818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
188	chr2	+	4765	10	FSM	ENSMUSG00000059005.14_ENSMUSG00000093242.4	ENSMUST00000164947.9	1074	10	-51	-3640	0	-481	multi-exon	FALSE	canonical	3	3726	junction_1	2155.72848103619	12	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAGTTATTTTACTA	7481	False	NA	NA	False	NA	NA	NA	75489610	75499270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
189	chr13	-	2842	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	651.634412967321	1	89	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498339	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480412_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498260
191	chrX	-	8099	26	NNC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	98.7245379832187	629	53	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTGGTATTTACCCGTG	NA	False	NA	NA	False	NA	NA	NA	73009965	72986400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000210_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
192	chr14	+	4675	27	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-29	40	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	326.203518078976	649	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAATGAAATGGATTTT	1802	False	NA	NA	False	NA	NA	NA	121148606	121185451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121153493_121153582_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
193	chr11	+	3953	27	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-7	-216	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	545.621979647591	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGCCAATCTCTGACTCA	NA	False	NA	NA	False	NA	NA	NA	72332195	72342378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702_72341856_72342029
194	chr19	+	4888	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1091.93340456275	7	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1481	False	NA	NA	False	NA	NA	NA	44282526	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283495_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
195	chr5	-	4654	15	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23744	28973	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGTCTGGATCACATG	NA	False	NA	NA	False	NA	NA	NA	108256652	108225258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108226293_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
196	chr5	+	4270	16	NIC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	-3	-9	intron_retention	FALSE	canonical	0	0	junction_4	643.731503725652	89	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAAGAGCTAATGAG	NA	False	NA	NA	False	NA	NA	NA	108213536	108256861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
198	chr5	+	4246	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	367	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	616.072190475719	35	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAAAATAATATACCTTC	NA	False	NA	NA	False	NA	NA	NA	108208601	108257237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
200	chr14	+	3246	6	ISM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	52081	5	-1890	-5	3prime_fragment	FALSE	canonical	3	1560	junction_2	69.6258572658176	12	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTCTTGTGGTCTAAATA	NA	False	NA	NA	False	NA	NA	NA	19853413	19861850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
201	chrX	+	3696	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-478	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	711.086339624099	1564	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATGTAGCCATCCTGGC	NA	False	NA	NA	False	NA	NA	NA	20529169	20548940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542352_20544338_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
202	chr5	-	4081	18	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256654	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108221172_108221319_108226729_108226839_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108247519_108247598_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
203	chr6	+	5909	11	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	1	-25	intron_retention	FALSE	non_canonical	0	0	junction_8	569.801202174934	11	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGGAGCAAACTGAATAAA	NA	False	NA	NA	False	NA	NA	NA	71808402	71852203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821708_71828755_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71848543_71849777_71849908_71851300
204	chrM	+	1079	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	-60	-64	-60	64	mono-exon	FALSE	NA	NA	NA	NA	NA	928	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAACTAATCCTAGCCCT	NA	False	NA	-59	True	NA	NA	NA	9	1088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_0_1100
206	chr19	-	4264	27	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24168	-6532	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	117	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGGCGCAGAGGATCA	NA	False	NA	NA	False	NA	NA	NA	10607186	10582927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584357_10585156_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592331_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605940_10606436
207	chr13	+	6757	32	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	75	-5	intron_retention	FALSE	non_canonical	0	0	junction_19	510.892115208185	2	96	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTTGGAAGTAGTTA	NA	False	NA	NA	False	NA	NA	NA	49835741	49887738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49836121_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865317_49868289_49868374_49869160_49869306_49871379_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49885969_49887134
209	chr4	+	3842	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159937	182156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	183.163970256161	14	68	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146426546	146806008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146797295_146797381_146800390_146800518_146802050_146804797_146805385
210	chr9	-	5254	39	NNC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	-31	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	184.48982585735	901	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCACCCAGCTAGTGATT	NA	False	NA	NA	False	NA	NA	NA	20864172	20818510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843411_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851848_20852668_20852880_20852994_20853103_20853878_20853916_20864003
212	chr5	+	3963	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-25	intron_retention	FALSE	canonical	0	0	junction_4	721.307065439582	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAAATGTGTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
214	chr11	+	4001	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	5	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	552.824303373142	6	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332187	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339188_72339673_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
215	chr7	-	3789	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	76	junction_10	1322.53667310237	2	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682237	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676040_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
216	chr19	+	5214	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-34	2	intron_retention	FALSE	canonical	2	9	junction_19	881.969615330859	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTATTGGTCTCTGCTT	596	False	NA	NA	False	NA	NA	NA	10582916	10607185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602281_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
217	chr14	+	6901	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	-20	combination_of_known_junctions	FALSE	canonical	3	97	junction_7	37.2808177887771	1	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATGATGAGCCATTTCTA	NA	False	NA	NA	False	NA	NA	NA	21531501	21722181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
218	chr11	+	2139	16	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	0	4173	0	3032	5prime_fragment	FALSE	canonical	3	2354	junction_12	152.295093668692	28	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCACTGATGACGCTGAT	NA	False	NA	NA	False	NA	NA	NA	72332180	72338421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378
219	chr11	+	5171	36	Antisense	novelGene_ENSMUSG00000065262.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	739	21	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTAGGAGAGCTTCCCTAG	NA	False	NA	NA	False	NA	NA	NA	98883777	98915007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_98884240_98884589_98884762_98885032_98885235_98886070_98886205_98886506_98886550_98886675_98886802_98887556_98887699_98888651_98888746_98889987_98890172_98891591_98891677_98891798_98891957_98892173_98892268_98893699_98893894_98894330_98894534_98894651_98894787_98894937_98895170_98896828_98896980_98897787_98897906_98898004_98898127_98900060_98900152_98900418_98900521_98900613_98900723_98900851_98900962_98901296_98901426_98901731_98901889_98902845_98902985_98905239_98905381_98905515_98905615_98905710_98905888_98906854_98907067_98907255_98907358_98909659_98909768_98912536_98912603_98913167_98913257_98913665_98913819_98914871
220	chr11	+	6323	23	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	13	0	intron_retention	FALSE	non_canonical	0	0	junction_20	107.252116664081	765	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	NA	False	NA	NA	NA	45946831	46038170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030609_46030883_46031058_46033745_46033899_46034618
222	chr11	+	4181	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-7	-218	intron_retention	FALSE	canonical	2	6	junction_25	555.091496602137	348	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332195	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702_72341971_72342112
226	chr1	-	6957	10	NIC	ENSMUSG00000054387.14	novel	7105	11	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	144	junction_5	94.521537162989	448	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTTTTGTCATTATT	NA	False	NA	NA	False	NA	NA	NA	132953076	132913959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
227	chr14	+	5015	20	ISM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	-20	0	-20	0	intron_retention	FALSE	canonical	3	1309	junction_14	130.543589688901	814	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	NA	False	NA	NA	NA	19801312	19861855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021
229	chr2	+	1903	9	Antisense	novelGene_ENSMUSG00000027597.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATCTCCCGCATGCGCAT	8626	False	NA	NA	False	NA	NA	NA	154901648	154910850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154902501_154904068_154904261_154905696_154905820_154905909_154905996_154906072_154906282_154906733_154906846_154907455_154907607_154909242_154909323_154910752
230	chr6	-	6446	28	Antisense	novelGene_ENSMUSG00000107534.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	314	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCCTCGTCCGCTCACT	NA	False	NA	NA	False	NA	NA	NA	83963853	83891348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83891461_83905633_83907146_83911928_83911993_83918226_83918264_83919813_83920119_83921589_83921868_83923196_83923344_83924798_83924922_83930063_83930124_83930316_83930369_83931691_83931742_83933673_83933743_83934488_83934572_83935162_83935240_83936916_83936949_83938956_83939087_83942506_83942638_83943426_83943469_83944272_83944407_83946095_83946220_83949225_83949263_83953180_83954410_83955001_83955068_83955973_83956890_83958663_83958766_83960955_83961055_83961756_83961876_83963537
231	chr4	+	3018	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000086147.3	novel	2295	5	NA	NA	1951	79567	multi-exon	FALSE	non_canonical	0	0	junction_1	13.0999761450164	1	59	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147058409	147344603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147058498_147060199_147060315_147061946_147062070_147067103_147067255_147071090_147071218_147073383_147073522_147073853_147075834_147264984_147265192_147344514
232	chrX	-	2578	5	NIC	ENSMUSG00000025283.16	novel	1352	6	NA	NA	44	-6	intron_retention	FALSE	canonical	3	1003	junction_1	114.726577130149	186	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGCCTGAGCATTTTT	NA	False	NA	NA	False	NA	NA	NA	153999401	153996133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_153996664_153996892_153996934_153997028_153998681_153998780_153998833_153999098
233	chr2	+	5699	44	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	204.554972108688	954	32	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGTCATGTGGCAACT	4860	False	NA	NA	False	NA	NA	NA	30176420	30234275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217604_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
234	chr6	-	3634	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAATGTATGTGTCATGT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122704850_122704923_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
235	chr11	-	5210	36	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-86	-9	combination_of_known_junctions	FALSE	canonical	3	459	junction_1	255.273980064477	255	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGCCATCCATTCCTCT	NA	False	NA	NA	False	NA	NA	NA	98915101	98883777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
239	chr5	+	8543	58	FSM	ENSMUSG00000041638.19	ENSMUST00000064454.12	8555	58	11	1	-7	-1	multi-exon	TRUE	canonical	2	352	junction_15	70.6565046091486	486	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGGAGTTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	115703323	115760712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720497_115721456_115721610_115723864_115723958_115725847_115725924_115726034_115726195_115726992_115727183_115727259_115727385_115728303_115728483_115729032_115729127_115730123_115730238_115730367_115730567_115731635_115731792_115732091_115732274_115733051_115733133_115733351_115733496_115734914_115735043_115735124_115735315_115735432_115735504_115736759_115736926_115737130_115737326_115740444_115740692_115741271_115741394_115742068_115742184_115742876_115743057_115744531_115744753_115747287_115747357_115747524_115747664_115747749_115747947_115748080_115748224_115748866_115748985_115749082_115749299_115750646_115750812_115751414_115751577_115751782_115751876_115752134_115752279_115752389_115752660_115752919_115753034_115753427_115753659_115754409_115754604_115754692_115754808_115757355_115757453_115757710_115757860_115758202_115758311_115759559_115759779_115760083
241	chr3	+	5911	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-36	2153	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	508	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGACAAAATGTGCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	63202832	63291197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
242	chr1	-	5688	24	NIC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-2457	-1853	intron_retention	FALSE	canonical	2	43	junction_21	317.301071152074	2	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTTGTGTGTGTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	55058545	55026184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55054027_55055650_55055937_55056043_55058392
245	chr19	-	4105	27	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24168	-6604	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAACCCCCACCCTCACGC	NA	False	NA	NA	False	NA	NA	NA	10607186	10582999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584357_10585156_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10600943_10602079_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439
246	chr14	+	7204	18	NNC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	51.4679999349211	540	57	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGACTTTGATCTTCA	NA	False	NA	NA	False	NA	NA	NA	21531501	21722540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712413_21712468_21712535_21714524_21714817_21718398
247	chr12	-	1548	12	FSM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	126	514	-2	-514	multi-exon	FALSE	canonical	3	359	junction_6	45.6703965821071	1392	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTTGGACTGAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	40495775	40365558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
250	chr19	+	4523	25	NIC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	2606	junction_4	259.361150902024	173	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCTTATTGGTCTCTG	661	False	NA	NA	False	NA	NA	NA	10582981	10607182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10605229_10605788_10605913_10606442
251	chr14	+	5196	22	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	-269	-1	at_least_one_novel_splicesite	TRUE	canonical	3	19	junction_20	460.456049197565	643	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGTGGTCTAAATATCTA	NA	False	NA	NA	False	NA	NA	NA	19801063	19861854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19860785_19860838_19861021_19861135_19861253
252	chr11	+	4027	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-36	-218	combination_of_known_splicesites	FALSE	canonical	3	37	junction_24	551.711502143305	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332144	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341702
253	chr11	-	7165	37	NIC	ENSMUSG00000018501.18	novel	8852	45	NA	NA	-3112	-314	combination_of_known_junctions	FALSE	canonical	3	28	junction_27	103.270780798184	2	61	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTACAGTACATCATTTGT	NA	False	NA	NA	False	NA	NA	NA	62289130	62207829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264401_62267460_62267588_62269322_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090
254	chr4	+	3464	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43227	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	127.559554718571	3	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533646	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597042_147597711
255	chr9	-	5381	29	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.556730616718567	1	130	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGGAGCGCGCTGGGGT	6191	False	NA	NA	False	NA	NA	NA	72657124	72569729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569895_72577232_72577399_72578511_72578584_72584594_72584673_72584772_72584813_72593341_72593392_72616391_72616444_72617758_72617825_72619452_72619549_72625500_72625667_72628582_72628699_72628776_72628944_72632298_72632364_72633691_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648968_72649932_72650048_72650826_72650912_72653681_72653759_72654404
256	chr1	-	6004	17	NNC	ENSMUSG00000026235.15	novel	6315	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	47.804288510551	1	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAAATCTGGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	77491720	77343825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403492_77483308_77483849_77488319_77488388_77491577
257	chr5	-	4020	17	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23730	45628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256666	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108221172_108221313_108226729_108226849_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240023_108241202_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
258	chr6	-	2022	5	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.89711431702997	512	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCAAATCAGCCTATCT	7481	False	NA	NA	False	NA	NA	NA	122691583	122684572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688581_122688717_122688759_122689580_122689666_122690091
259	chr9	-	5768	39	NNC	ENSMUSG00000004099.17	novel	5870	39	NA	NA	83	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	233.464514140545	15	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	20863818	20818504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843411_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851848_20852668_20852880_20852994_20853103_20853878_20853916_20863141
260	chr3	+	2931	24	NNC	ENSMUSG00000105552.2	novel	640	4	NA	NA	-971	17437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	24	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGCCCACCACGTCGCCG	NA	False	NA	NA	False	NA	NA	NA	89907450	89946189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89907560_89909584_89909784_89910551_89910623_89915565_89915666_89916408_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935689_89938620_89938677_89941370_89941485_89941961_89942006_89945674_89945773_89946154
261	chr8	-	5962	24	NIC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-19	-257	intron_retention	FALSE	canonical	3	597	junction_21	102.492399091131	4	39	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTGCGTGTGTAGTT	NA	False	NA	NA	False	NA	NA	NA	111573438	111537127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_111537714_111538022_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
262	chr6	-	5582	18	FSM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	-67	-2	-67	2	multi-exon	FALSE	canonical	3	435	junction_14	56.0328005768445	682	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGTGATTGGATCT	9331	False	NA	NA	False	NA	NA	NA	82751502	82702003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
263	chr19	-	4970	21	NIC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	407.094150658051	73	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	8723	False	NA	NA	False	NA	NA	NA	60779112	60749554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
264	chr13	+	4798	9	Fusion	ENSMUSG00000074867.5_ENSMUSG00000113566.2	novel	478	4	NA	NA	50	2783	multi-exon	TRUE	non_canonical	0	0	junction_4	187.913834974969	1	186	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTTCGTTTAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	62245633	62324016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_62245653_62250218_62250513_62254561_62254689_62254881_62254943_62317255_62317383_62317567_62317606_62319244_62320940_62321021_62321979_62322536
265	SIRV8001	+	8001	1	FSM	SIRV8001A	SIRV8001	8001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	597	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV8001_+_0_8000
266	chr5	+	4200	16	NIC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	6	0	intron_retention	FALSE	canonical	0	0	junction_4	643.731503725652	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108213615	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
267	chr11	-	6026	33	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	55	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	269.806612962762	4	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACATGTAGAATTGCAG	NA	False	NA	NA	False	NA	NA	NA	86648272	86585483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586517_86588090_86588167_86593018_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073_86648130_86648212
268	chr11	-	4300	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	93	0	-38	0	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	2348	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418733	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
270	chr5	+	3862	14	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	733.569622144036	20	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTAATGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108208603	108256869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251929_108254479
272	chr7	+	1857	6	Antisense	novelGene_ENSMUSG00000030655.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGTGTGCTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	117718125	117737258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_117719634_117720383_117720469_117721148_117721266_117725617_117725738_117726355_117726366_117737241
273	chr19	-	5089	22	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	464.538954135492	153	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATTGGTGTTAGTGTTT	8740	False	NA	NA	False	NA	NA	NA	60779095	60749563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760149_60760530_60760636_60761129_60761478_60761944_60762131_60762332_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
274	chr6	-	3628	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705114_122705203_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
275	chr11	-	4090	27	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	1039.25562018343	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	747	False	NA	NA	False	NA	NA	NA	100414449	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406799_100407601_100407721_100409953_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265
276	chr11	-	4104	24	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCACTTCCAGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	72342049	72332182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72332402_72332503_72332598_72333223_72333308_72333393_72333468_72333568_72333675_72334296_72334476_72334564_72334733_72334826_72334945_72335505_72336110_72336430_72336556_72336715_72336888_72336983_72337082_72337795_72337893_72337972_72338125_72338373_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340003_72340087_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
277	chr5	+	3899	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-216	intron_retention	FALSE	non_canonical	0	0	junction_4	730.602017923404	5	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108239959_108240007_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
280	chr4	+	2875	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	375	3	NA	NA	72	-182	multi-exon	FALSE	non_canonical	0	0	junction_2	208.042513684103	1	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCTGTAAATATGCTTACA	NA	False	NA	NA	False	NA	NA	NA	145136907	145265576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136997_145138756_145138896_145257381_145257486_145261385_145261513_145263160
281	chr4	+	2933	5	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-3	0	multi-exon	FALSE	non_canonical	0	0	junction_1	76.333151382607	298	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	4107	False	NA	NA	False	NA	NA	NA	147314737	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147393100_147393181_147409230_147409335_147413438_147413566_147415724
282	chrX	+	3524	27	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	17	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	698.669734516241	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20529153	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529259_20529308_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
283	chr11	+	4013	27	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-10	-213	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_26	544.548688060709	1	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCAATCTCTGACTCAACC	NA	False	NA	NA	False	NA	NA	NA	72332170	72342381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702_72341971_72342112
284	chr14	+	3904	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-38	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	256.471952462643	5	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	1793	False	NA	NA	False	NA	NA	NA	121148597	121184828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172591_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
287	chr6	-	3633	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-17	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	9	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCTGAATGTATGTGTCA	10022	False	NA	NA	False	NA	NA	NA	122719498	122704795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705560_122705651_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
288	chr11	+	4194	28	Antisense	novelGene_ENSMUSG00000104854.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	123	22	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCAGCCGGGGATCCGG	NA	False	NA	NA	False	NA	NA	NA	100367181	100418698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100368164_100368839_100368917_100369152_100369237_100370009_100370119_100372197_100372349_100372522_100372672_100372968_100373125_100374533_100374627_100375423_100375552_100383328_100383442_100384362_100384447_100384711_100384905_100386683_100386791_100389010_100389180_100389446_100389592_100395007_100395124_100395683_100395835_100403700_100403819_100405100_100405163_100405786_100405890_100406793_100406846_100407600_100407733_100409914_100409995_100410440_100410631_100411115_100411178_100412805_100412927_100414258_100414446_100418618
289	chr4	+	1937	7	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	1476	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	265.7476350893	4	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAGTGTTTCAATAAACAT	6524	False	NA	NA	False	NA	NA	NA	89056834	89099280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89056889_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090501_89097933
291	chr13	+	4312	5	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-50	127929	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	126.709066368591	11	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGAGTGCTGTTGATTA	NA	False	NA	NA	False	NA	NA	NA	62163747	62326729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729_62200594_62326588
292	chr7	+	4567	26	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	239.376610386228	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	7239	False	NA	NA	False	NA	NA	NA	109617521	109655816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223_109654862_109655016
293	chr17	-	3147	16	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	15	935	intron_retention	FALSE	canonical	3	665	junction_15	78.7695936823905	3	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCAAGAAGTCATGTTTA	8690	False	NA	NA	False	NA	NA	NA	24470368	24442996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
294	chr6	-	3959	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	-7	intron_retention	FALSE	canonical	0	0	junction_1	2991.63845854854	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATGTATGTGTCATGTC	8916	False	NA	NA	False	NA	NA	NA	122719478	122704791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705455_122705520_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122714258_122716791_122716953_122717346_122717440_122719334
295	chr14	+	4028	27	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	327.299785224928	1862	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	1840	False	NA	NA	False	NA	NA	NA	121148644	121184828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121172943_121173046_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
296	chr1	+	4898	32	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	2	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	567.466859681364	2	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTTTATCTATTTGGT	NA	False	NA	NA	False	NA	NA	NA	185095242	185160547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118532_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
297	chr3	+	2626	18	Antisense	novelGene_ENSMUSG00000105655.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGGGGGGGGCACACAT	NA	False	NA	NA	False	NA	NA	NA	104702147	104761685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702556_104702639_104702765_104703011_104703099_104703175_104703300_104704077_104704156_104704283_104704477_104704589_104704713_104706713_104706924_104707012_104707118_104707267_104707366_104707590_104707748_104708000_104708150_104708271_104708450_104708713_104708876_104709747_104709910_104710107_104710246_104711447_104711559_104761667
298	chr11	-	4113	27	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1050.95513968071	13	22	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGCGTGATGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	100418695	100367184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100372238_100372347_100372522_100372674_100372970_100373126_100374530_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
299	chr5	+	4052	15	NNC	ENSMUSG00000029267.18	novel	4060	15	NA	NA	11	0	intron_retention	FALSE	canonical	0	0	junction_6	635.747784029138	3	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108213550	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235960_108239999_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
300	chr7	-	1111	4	FSM	ENSMUSG00000002985.17	ENSMUST00000174064.9	1408	4	136	161	0	2	multi-exon	FALSE	canonical	3	8700	junction_3	835.854984764436	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTCTCTGTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	19432977	19430194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432935
301	chr9	+	5392	29	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	899.534380688596	2	173	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569717	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577235_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638701_72639866_72639940_72642291_72642522_72643948_72644071_72644155_72644224_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
302	chr9	+	868	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	-28	-9	2	9	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGACTTTTTTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	14411914	14421670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
303	chr5	+	4275	19	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-222	intron_retention	FALSE	canonical	0	0	junction_6	824.813052144336	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTCTTTAATTTTAACTG	NA	False	NA	NA	False	NA	NA	NA	108208601	108256648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217031_108217230_108221172_108221321_108226731_108226841_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
304	chr11	+	5307	36	Antisense	novelGene_ENSMUSG00000065262.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	761	12	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGTAACCAATCGTAGATC	NA	False	NA	NA	False	NA	NA	NA	98883772	98915101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_98884240_98884589_98884762_98885032_98885235_98886070_98886205_98886506_98886551_98886675_98886802_98887556_98887699_98888651_98888746_98889987_98890172_98891591_98891677_98891798_98891957_98892173_98892268_98893699_98893894_98894330_98894534_98894651_98894787_98894937_98895170_98896828_98896980_98897787_98897906_98898004_98898127_98900060_98900152_98900418_98900521_98900613_98900723_98900851_98900962_98901296_98901426_98901731_98901889_98902845_98902985_98905239_98905381_98905513_98905615_98905710_98905888_98906854_98907067_98907255_98907352_98909619_98909768_98912536_98912603_98913167_98913257_98913665_98913819_98914871
305	chrX	-	4827	21	NNC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	-346	1656	at_least_one_novel_splicesite	FALSE	non_canonical	3	52	junction_20	294.224132252948	936	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTCTGGGGAAGATAT	7809	False	NA	NA	False	NA	NA	NA	37653885	37620494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653751
306	chr8	-	5482	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	0	-253	intron_retention	FALSE	canonical	3	77	junction_15	204.661648581262	6	25	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTGTGTAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	111573408	111537123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111552290_111552726_111552879_111556150_111556180_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
307	chr19	-	5118	22	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	-17	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	397.107866449875	1476	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGTTAGTGTTTTGTC	8722	False	NA	NA	False	NA	NA	NA	60779113	60749559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758463_60759491_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
308	chr2	+	2460	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	127	1085	2	-69	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAATTTTTGTGAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	34662108	34666474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
309	chr6	-	2143	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.24264068711928	567	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCAAATCAGCCTATCT	7492	False	NA	NA	False	NA	NA	NA	122691572	122684572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688754_122689580_122689666_122690091
310	chr15	+	6467	16	NIC	ENSMUSG00000023025.17	novel	6530	16	NA	NA	8	-1	combination_of_known_junctions	FALSE	canonical	3	302	junction_1	90.2603641325102	622	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGGTTTCTTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	99870725	99914238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_99870865_99882797_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605_99889710_99891203_99891315_99892544_99892599_99894347_99894558_99895253_99895358_99898716_99898930_99899682_99899732_99903121_99903284_99905487_99905610_99908172_99908342_99909716
313	chr6	+	6357	27	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_11	85.9480027202356	275	34	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	83891366	83963851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
316	chr11	-	5904	33	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	22	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	212.364285706778	3	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTAGAATTGCAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	86648305	86585478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86585778_86586004_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
317	chrX	+	3644	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	-1	-476	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_1	675.886646117528	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20529135	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529413_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
319	chr11	+	1403	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-285	-17540	intron_retention	FALSE	canonical	3	287	junction_2	383.5	9	43	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9146	False	NA	NA	False	NA	NA	NA	88860792	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861306_88861723_88861820_88863446
320	chr3	+	5986	25	NNC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-68	2080	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	124.832380670597	527	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTCAACTCCTTTGTG	NA	False	NA	-59	True	NA	NA	NA	63148889	63291124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63148988_63150636_63150716_63197272_63197448_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
321	chr3	+	6028	4	FSM	ENSMUSG00000041220.11	ENSMUST00000199910.5	2610	4	102	-3520	71	-4	multi-exon	FALSE	canonical	3	229	junction_1	79.2001683499894	592	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTTTCTAGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	129326105	129432140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_129326418_129398689_129398822_129421931_129422084_129426708
322	chrX	+	3577	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	101	-473	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	683.112113785139	8	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524760	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524968_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
325	chr11	+	3896	27	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-1	-207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	545.621979647591	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGACTCAACCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	72332201	72342387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702_72341815_72342048
326	chr7	+	4642	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	244.29461593535	57	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	7239	False	NA	NA	False	NA	NA	NA	109617521	109655816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109645971_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
327	chr5	+	4041	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	0	intron_retention	FALSE	non_canonical	0	0	junction_16	674.874707700437	7	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255464_108255590
328	chr7	-	5827	3	NIC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	0	-1	intron_retention	FALSE	canonical	3	126	junction_2	42.5	21	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATTTTCATTAGTAATT	NA	False	NA	NA	False	NA	NA	NA	42516658	42466253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_42471844_42472041_42472168_42516547
330	chr10	-	4545	16	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	10	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	174.091342563482	1007	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGGTGGCTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	62438050	62416025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62416584_62416754_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
331	chr10	+	6040	5	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-17	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	599.951820982319	300	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCACTGTTTTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	4216362	4309469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4216669_4263742_4263858_4303141_4307940_4308477_4308920_4309090
332	chr17	-	6791	2	NIC	ENSMUSG00000095677.3	novel	3545	4	NA	NA	-2	-7	intron_retention	FALSE	canonical	3	5415	junction_1	0	1532	71	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTGTATTTCATGTAGC	NA	False	NA	NA	False	NA	NA	NA	6923219	6914007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_6920752_6923172
333	chr10	-	2567	11	NNC	ENSMUSG00000035835.15	novel	3063	9	NA	NA	2951	1683	intron_retention	FALSE	non_canonical	0	0	junction_1	0	23	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGCTGACACACGTGGAG	NA	False	NA	NA	False	NA	NA	NA	79700164	79694625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79694656_79694782_79695105_79695183_79695354_79695432_79695544_79695612_79695791_79696656_79696799_79697841_79697881_79698281_79698375_79698485_79698704_79698811_79698890_79698978
335	chr2	-	6085	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	40	-2056	40	-21	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	1331	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCATTTAAAAGATCTTC	NA	False	NA	NA	False	NA	NA	NA	103627409	103593306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
336	chr1	-	7103	12	NNC	ENSMUSG00000054387.14	novel	3490	12	NA	NA	-528	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	184.667939648127	23	64	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTCATTGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	132947124	132913966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132931704_132931845_132932391_132932463_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132947091
337	chr11	-	4185	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	780.806591150866	10	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418691	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407686_100409940_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
338	chr1	+	4840	33	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	3	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	558.642607129102	3	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTTTATCTATTTGGT	NA	False	NA	NA	False	NA	NA	NA	185095257	185160547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133555_185133593_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
339	chr11	+	4341	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	7	0	intron_retention	FALSE	canonical	3	2354	junction_12	195.048814224941	1	72	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGAAAAAAGAGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	72332189	72342055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72341601_72341702
341	chr2	-	2126	16	Antisense	novelGene_ENSMUSG00000027642.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	82	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCCACATCCTGCTTGG	NA	False	NA	NA	False	NA	NA	NA	157167975	157125598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_157125696_157131445_157131542_157132454_157132633_157136072_157136147_157137171_157137307_157139299_157139478_157141459_157141578_157144323_157144430_157152118_157152212_157154395_157154504_157156689_157156892_157158041_157158126_157159862_157159960_157162036_157162114_157163654_157163791_157167628
342	chr2	+	465	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	41	603	41	-603	multi-exon	FALSE	canonical	3	3938	junction_1	0	9865	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCATTTTGTGTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	112092311	112093011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_112092423_112092657
343	chr2	+	627	2	Intergenic	novelGene_2597	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCTGTAAATATAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	29963161	29963911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_29963701_29963823
344	chr6	-	5966	26	Antisense	novelGene_ENSMUSG00000107534.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACGCATGCGCATCTTCG	NA	False	NA	NA	False	NA	NA	NA	83963843	83891371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83891461_83905633_83906662_83906853_83907146_83911928_83911993_83918226_83918264_83919813_83920119_83921589_83921868_83923196_83923344_83924798_83924922_83930063_83930124_83930316_83930369_83931691_83931739_83935160_83935240_83936916_83936949_83938956_83939087_83942506_83942638_83943426_83943469_83944272_83944407_83946095_83946220_83949225_83949263_83953180_83954410_83955001_83955068_83955973_83956890_83960955_83961055_83961756_83961876_83963537
346	chr9	+	5517	17	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_13	70.836712541944	1224	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTATGTTGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	109760886	109913015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070_109907153_109908848_109908962_109910488_109910679_109910802
347	chr1	+	4725	32	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	563.605819035592	559	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTTTATCTATTTGGT	NA	False	NA	NA	False	NA	NA	NA	185095240	185160547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139803_185142404_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
348	chrX	-	7566	24	NNC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	-602	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	101.689768776038	4	96	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAAATAACCATCTGGT	NA	False	NA	NA	False	NA	NA	NA	73010565	72986411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73001953_73010152
350	chr3	-	3157	2	Antisense	novelGene_ENSMUSG00000047213.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	60	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAATTCCCACATTGCCCT	NA	False	NA	NA	False	NA	NA	NA	16270324	16258637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_16259588_16268117
351	chrX	+	3667	25	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	33	539	33	435	intron_retention	FALSE	canonical	3	2172	junction_1	320.692347269501	48	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTCACCGCTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20529169	20548879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347
352	chr10	-	5195	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	-32	-441	-32	441	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	574	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTTTTCAAGACAGATC	NA	False	NA	NA	False	NA	NA	NA	62438092	62415588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
354	chr6	-	2168	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.24264068711928	1233	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCAAATCAGCCTATCT	7472	False	NA	NA	False	NA	NA	NA	122691592	122684572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688759_122689580_122689666_122690091
355	chr1	+	4813	32	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	23	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	567.466859681364	94	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATCTATTTGGTTCATC	NA	False	NA	NA	False	NA	NA	NA	185095277	185160552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118485_185119263_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
356	chr9	+	5719	19	FSM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	359	13	19	-4	multi-exon	FALSE	canonical	3	256	junction_1	32.471877671397	1185	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACCATGTTATGTTGCT	NA	False	NA	NA	False	NA	NA	NA	109760886	109913010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
357	chr5	+	2295	16	Antisense	novelGene_ENSMUSG00000025745.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAGTATCGACAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	30324497	30349295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30324958_30325041_30325189_30325685_30325799_30326333_30326531_30327146_30327216_30327617_30327762_30328607_30328691_30331560_30331734_30333796_30333932_30334817_30334929_30337237_30337294_30339054_30339177_30339977_30340102_30345947_30346047_30347713_30347837_30349156
358	chr5	+	3891	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	757.466907234604	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAATTTTAACTGAACA	NA	False	NA	NA	False	NA	NA	NA	108208601	108256652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228775_108228889_108229002_108229089_108234864_108234961_108235082_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
359	chr13	+	2671	5	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-42	695	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	126.709066368591	21	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAAGCTTGTGTGTGGACC	NA	False	NA	NA	False	NA	NA	NA	62163755	62199495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729_62198919_62199312
360	chr1	-	6360	28	FSM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-129	0	-115	0	multi-exon	FALSE	canonical	3	431	junction_27	59.547263104276	861	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGATGGGACTCAT	NA	False	NA	NA	False	NA	NA	NA	93406652	93333661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
361	chr5	+	5105	22	NNC	ENSMUSG00000005672.13	novel	5241	21	NA	NA	39	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	288.228792341594	74	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATAAATTTTTCTGTT	805	False	NA	NA	False	NA	NA	NA	75735653	75817376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073_75816088_75816139
363	chr6	-	6269	26	Antisense	novelGene_ENSMUSG00000107534.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	151	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATCTTCGCCTAAAGCC	NA	False	NA	NA	False	NA	NA	NA	83963843	83891362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83891461_83905633_83907146_83911928_83911993_83918226_83918264_83919813_83920119_83921589_83921868_83923196_83923344_83924798_83924922_83930063_83930124_83930316_83930369_83931691_83931739_83935160_83935240_83936916_83936949_83938956_83939087_83942506_83942638_83943426_83943469_83944272_83944407_83946095_83946220_83949225_83949263_83953180_83954410_83955001_83955068_83955973_83956890_83958663_83958766_83960955_83961055_83961756_83961876_83963537
364	chr11	-	4183	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	925.491432473382	381	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	NA	False	NA	NA	NA	100418695	100367178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370063_100372253_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
366	chr7	-	2398	10	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	-701	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1919.85526717864	1	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGATGTAGTTGTACATG	NA	False	NA	NA	False	NA	NA	NA	110676117	110671144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674539_110674649_110674793_110674920_110675486_110675601_110675902
367	chrX	-	4458	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	66	0	-47	0	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	1861	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105055439	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
368	chr10	-	5158	14	NIC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	10	0	intron_retention	FALSE	canonical	3	474	junction_13	68.1647846752448	1555	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTCTTGGTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	62438050	62416029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
369	chr9	-	5151	39	NNC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	-1	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	237.620959137881	773	30	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCACCCAGCTAGTGATT	NA	False	NA	NA	False	NA	NA	NA	20864142	20818510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822789_20823028_20823312_20823475_20823594_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
370	chrX	+	3426	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	784.046229249271	5009	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538337_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
371	chr3	+	5913	24	NIC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-68	2086	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	113.727711832092	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACTCCTTTGTGCTTTGC	NA	False	NA	-59	True	NA	NA	NA	63148889	63291130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_63148988_63197272_63197448_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
372	chr11	-	1985	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1334.5135424797	1	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTGAATTAAGTGAAATT	9654	False	NA	NA	False	NA	NA	NA	106679320	106672379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676351_106677762_106677901_106679098
373	chr3	+	4257	21	NNC	ENSMUSG00000068823.11	novel	4185	20	NA	NA	10	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	5358.39471390453	2183	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACTAGCACCTAGCGCT	NA	False	NA	NA	False	NA	NA	NA	102927945	102965494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102943890_102944038_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954499_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
374	chr19	+	4114	28	NNC	ENSMUSG00000024740.11	novel	854	5	NA	NA	266	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1020.19513316785	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAACTCTTATTGGTCT	1019	False	NA	NA	False	NA	NA	NA	10583339	10607179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583403_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10587192_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
375	chr4	+	4890	15	Fusion	ENSMUSG00000067916.10_ENSMUSG00000063245.12	novel	387	3	NA	NA	-406035	155	multi-exon	TRUE	non_canonical	0	0	junction_1	26.3931229447277	1	210	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	2324	False	NA	NA	False	NA	NA	NA	146289382	147265191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146289578_146428027_146428160_146516854_146516986_146697966_146698060_146739355_146739414_146740256_146740384_146741834_146741973_146742638_146742707_146802658_146803245_146803916_146804621_146805042_146805189_146817994_146818398_146906971_146908370_147075350_147075483_147264612
376	SIRV1	-	1562	6	FSM	SIRV1A	SIRV101	1561	6	-1	0	-1	0	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	5510	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10787	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
377	chr9	-	2889	15	ISM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	8752	0	-864	0	3prime_fragment	FALSE	canonical	3	468	junction_10	46.5563625937335	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109921403	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383
378	chr5	+	3838	14	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	0	intron_retention	FALSE	canonical	0	0	junction_3	632.644950296843	2	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
382	chr11	-	2325	22	ISM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	14	2925	11	-1187	5prime_fragment	FALSE	canonical	3	142	junction_20	287.967078932215	8	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAATAGGATGCCTGTGG	8480	False	NA	NA	False	NA	NA	NA	102771779	102732223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
383	chr3	+	4045	20	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	10	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5032.77799465566	115	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGCACCTAGCGCTTTCA	NA	False	NA	NA	False	NA	NA	NA	102927945	102965498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946142_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
384	chrX	+	3440	25	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	-1	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	725.053671385015	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20529135	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535453_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
385	chrX	+	3511	27	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	24	-480	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	698.669734516241	23	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20529160	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616_20548723_20548778
386	chr11	-	5132	36	NNC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	320.60149591615	1065	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAGCCATCCATTCCTC	NA	False	NA	NA	False	NA	NA	NA	98915016	98883778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891659_98891860_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
387	chr19	-	4223	26	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24163	-6517	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACGGGACGGCCTCACC	NA	False	NA	NA	False	NA	NA	NA	10607181	10582912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602210_10602528_10602734_10603915_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439
388	chr5	+	4207	18	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-216	intron_retention	FALSE	canonical	0	0	junction_6	763.891412417628	1	79	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208601	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108226731_108226841_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
389	chr11	-	8568	35	NIC	ENSMUSG00000020315.19	novel	8461	36	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	341	junction_32	94.310427564532	357	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTATGACTAGCCGGTGTT	1831	False	NA	NA	False	NA	NA	NA	30148246	30049394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873_30087631_30088363_30088502_30088591_30089463_30090470_30090625_30092119_30092423_30093018_30093178_30094105_30094224_30095828_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30147723
390	chr10	-	4668	16	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	-5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	174.091342563482	516	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTCTTGGTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	62438065	62416029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62416667_62416725_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
391	chr19	-	4177	27	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24164	-6601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCCACCCTCACGCAGC	NA	False	NA	NA	False	NA	NA	NA	10607182	10582996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585846_10588051_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439
394	chr5	+	4492	18	NNC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	-26	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	844.266303778317	1	84	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108213513	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213840_108217027_108217230_108221172_108221321_108228777_108228877_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
395	chr1	-	5987	24	NNC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-30	-1853	intron_retention	FALSE	canonical	0	0	junction_16	421.21241425272	2	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTTGTGTGTGTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	55066583	55026184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55026652_55027097_55027315_55029461_55029619_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044951_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
397	chr6	-	3458	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-57	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8988	False	NA	NA	False	NA	NA	NA	122719406	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705628_122705815_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
399	chr4	+	4854	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	83825	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	124.535545290557	83	102	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGGTGATTTGCAATC	NA	False	NA	NA	False	NA	NA	NA	147576855	147681768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597546_147598717_147599386_147600659_147603437_147681532
400	chr11	-	4495	8	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	2	intron_retention	FALSE	canonical	3	3830	junction_3	168.775421365621	192	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
402	chr7	+	4176	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	243.951807484593	8	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCTTGATCTGATTGC	7239	False	NA	NA	False	NA	NA	NA	109617521	109655324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617662_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
403	chr11	-	4111	30	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	909.417816932929	326	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGCGTGATGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	100418695	100367184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100367593_100367770_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
404	chr2	+	5010	11	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	17	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3537.56550328047	2	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAATGTGTGTGTGGTTT	7511	False	NA	NA	False	NA	NA	NA	75489640	75499741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492098_75492275_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
405	chr6	+	6112	24	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	86.4435521751935	5	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	83891358	83963853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
406	chrX	+	1885	11	ISM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	55	3886	3	251	intron_retention	FALSE	canonical	3	179	junction_1	56.3474932894091	3	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAAATTCAGGCAAGGAT	NA	False	NA	NA	False	NA	NA	NA	13147263	13156405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633
407	chrX	+	3326	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	7	-475	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	797.950916366762	21	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524666	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535468_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
408	chr1	-	7027	11	FSM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	78	0	0	0	multi-exon	FALSE	canonical	3	199	junction_6	81.9383304687129	481	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTTGTCATTATTGG	NA	False	NA	NA	False	NA	NA	NA	132953076	132913957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
409	chr11	+	3891	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	3	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	731.311971732994	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332205	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341702_72341958_72342029
410	chr2	+	4657	10	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	-463	intron_retention	FALSE	canonical	0	0	junction_7	3589.8328376777	2	30	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATATGGTTCCACTGTCAT	7481	False	NA	NA	False	NA	NA	NA	75489610	75499288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75494040_75494059_75495371_75495495_75495577
411	chr6	-	5592	24	FSM	ENSMUSG00000025607.16	ENSMUST00000048774.13	3961	24	-27	-1604	-2	1604	multi-exon	FALSE	canonical	3	177	junction_15	22.2825132553629	987	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCTGTCTAGAAGTAACA	NA	False	NA	NA	False	NA	NA	NA	30873701	30745948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
412	chr9	+	5615	19	FSM	ENSMUSG00000032479.16	ENSMUST00000165876.8	5573	19	-41	-1	23	1	multi-exon	FALSE	canonical	3	101	junction_18	61.7868698345418	1147	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTATGTTGCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	109760890	109913016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910908
413	chrX	+	4664	20	Antisense	novelGene_ENSMUSG00000031095.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	237.58787847868	4	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGATTGGGGGAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	37620503	37653064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_37622608_37625999_37626150_37627828_37628004_37628876_37628985_37629815_37629928_37630927_37631036_37632208_37632295_37633625_37633739_37634373_37634478_37635568_37635761_37636722_37636841_37637303_37637373_37638084_37638167_37638462_37638555_37638713_37638876_37639741_37639817_37640530_37640601_37641258_37641362_37650484_37650594_37652532
414	chr5	+	3684	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	496.57702630665	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208600	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
416	chr9	+	2246	14	FSM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	58	689	58	-689	multi-exon	FALSE	canonical	3	518	junction_4	138.528744373691	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACTCCATATCATAGCT	5570	False	NA	NA	False	NA	NA	NA	35122508	35127621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
417	chr3	+	5819	6	NNC	ENSMUSG00000041220.11	novel	5951	5	NA	NA	67	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	160.505451620809	172	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTGTTTCTAGTTCTT	NA	False	NA	NA	False	NA	NA	NA	129326101	129432139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708_129428646_129428705
418	chr9	+	5600	18	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	19	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	84.599238423691	2	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTTATGTTGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	109760886	109913014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
421	chr10	-	5409	3	Antisense	novelGene_ENSMUSG00000038587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGAGAAGCGCTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	4308923	4284544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_4284708_4303139_4307938_4308475
422	chr4	-	5461	18	NIC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	15	-13	intron_retention	FALSE	canonical	3	160	junction_15	300.677366778302	16	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTCTAAATTTAAGAACA	NA	False	NA	NA	False	NA	NA	NA	135080498	135047814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135073757_135074045_135074169_135074425_135074516_135080407
423	chr15	-	5686	28	FSM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	0	-2	0	0	multi-exon	TRUE	canonical	3	283	junction_25	31.7407623492731	681	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTCTAGTTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	57998478	57957439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_57958968_57959972_57960102_57960647_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
424	chr4	+	924	7	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	2	-3047	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	251.575977037201	1	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTACCCAAACTTCCCAT	2313	False	NA	NA	False	NA	NA	NA	147106336	147142204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147106458_147107818_147107913_147115003_147115080_147136962_147137048_147140055_147140183_147141715_147142022_147142089
425	chrX	+	3493	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	710.628796489419	1105	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTAGCCATCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535465_20536473_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
426	chr5	+	7118	44	NNC	ENSMUSG00000013629.17	novel	7137	44	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_30	169.99838703781	750	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	7074	False	NA	NA	False	NA	NA	NA	31212144	31235823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230832_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
427	chr2	-	6632	30	Antisense	novelGene_ENSMUSG00000119104.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	23	105	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGGATCCCAGTGGCAAG	NA	False	NA	NA	False	NA	NA	NA	32122792	32040130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_32040142_32072459_32072641_32073133_32073313_32075354_32075461_32077490_32077565_32081518_32081663_32083772_32084017_32084391_32084513_32084865_32085006_32089008_32089103_32090836_32091034_32094021_32094335_32096345_32096565_32098675_32098842_32102080_32102301_32106054_32106246_32106623_32106765_32107202_32107346_32108686_32108768_32109223_32109415_32109548_32109750_32110101_32110189_32111091_32111197_32111354_32111548_32112299_32112397_32113427_32113556_32113937_32114180_32116240_32116397_32116951_32117047_32120620
428	chr5	-	2507	18	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	-59732	-698	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	201.43925046102	12	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAACCTTGTCTTTTATC	NA	False	NA	NA	False	NA	NA	NA	31397220	31315485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325038_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331732_31397135
429	chr11	+	4540	5	NIC	ENSMUSG00000007739.11	novel	1634	13	NA	NA	95	25	intron_retention	FALSE	canonical	3	4905	junction_3	202.181848839108	8	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCATGATGCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	22945718	22951644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22946039_22946314_22946458_22947032_22947155_22947602_22951473_22951559
430	chrX	+	3435	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	43	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	916.569704059653	21	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529179	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544507_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547462_20547707_20547754_20548141_20548244_20548347_20548449_20548616
433	chr19	-	4966	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	-134	0	36	0	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	1621	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	7306	False	NA	NA	False	NA	NA	NA	44396282	44382893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
434	chr11	+	3934	24	NIC	ENSMUSG00000040463.17	novel	4448	25	NA	NA	-7	-33	intron_retention	FALSE	canonical	3	2354	junction_12	209.453686720734	3	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGCACCCCTGCCAAG	NA	False	NA	NA	False	NA	NA	NA	72332195	72342022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
437	chr3	+	4974	19	NIC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-14	-9	intron_retention	FALSE	canonical	0	0	junction_12	4659.69898354861	11	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACACTAGCACCTAGCGC	NA	False	NA	NA	False	NA	NA	NA	102927908	102965493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102963794_102964201
438	chrX	+	3396	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	784.046229249271	6	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538309_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
439	chr5	-	3774	17	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23743	45628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256653	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108217027_108217228_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452_108255648_108255820
440	chr14	+	3860	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-18	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	256.124357295436	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	1813	False	NA	NA	False	NA	NA	NA	121148617	121184828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166727_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
442	chr3	-	346	1	Antisense	novelGene_ENSMUSG00000105176.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGTTACTGGGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	34127206	34126860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_34126900_34127200
443	chr13	+	4734	4	FSM	ENSMUSG00000113836.2	ENSMUST00000220871.2	2707	4	335	-2362	-44	2362	multi-exon	FALSE	canonical	3	77	junction_1	103.747556865478	1	232	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCGTTTAATTTTATTT	NA	False	NA	NA	False	NA	NA	NA	62163753	62201162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729
444	chr15	-	7098	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	-135	3	14	-3	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	658	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCCGAGTCTCGTATG	NA	False	NA	NA	False	NA	NA	NA	96540266	96469301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
445	chr15	+	7399	41	Antisense	novelGene_ENSMUSG00000084497.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	184	19	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGCCCTCCCTGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	77644795	77726345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_77646219_77647153_77647323_77647419_77647535_77647995_77648203_77648501_77648623_77648703_77648796_77649901_77650031_77650915_77651073_77651327_77651542_77651648_77651864_77652991_77653236_77653395_77653553_77653703_77653813_77653969_77654171_77655321_77655468_77656021_77656231_77657467_77657651_77658141_77658258_77658755_77658891_77659267_77659481_77660002_77660133_77661088_77661199_77661966_77662129_77664189_77664258_77665305_77665432_77665520_77665718_77667589_77667701_77669289_77669466_77670685_77670861_77671709_77671862_77673117_77673238_77674067_77674166_77674904_77675050_77675248_77675347_77675915_77675979_77676452_77676549_77680162_77680253_77681199_77681229_77692067_77692225_77697079_77697430_77726154
447	chr4	+	4111	11	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-38	184404	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	159.553909384885	1	124	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146093355	146319729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126784_146126867_146129876_146130000_146131533_146132146_146132227_146132891_146132973_146134189_146134360_146134893_146199440_146199581_146255218_146255485_146319537
448	chr11	-	3860	26	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	1552	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	1055.71367330351	1	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	2324	False	NA	NA	False	NA	NA	NA	100412872	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403711_100403761_100405119_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807
450	chr13	-	2765	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-24	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2380.72947254168	59	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	5101	False	NA	NA	False	NA	NA	NA	58549980	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
451	chr5	+	4894	1	Intergenic	novelGene_744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	142	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGGCAAGAGAAAAGAATGT	NA	False	NA	NA	False	NA	NA	NA	89352055	89356949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_89352100_89356900
452	chr2	-	5652	17	NNC	ENSMUSG00000026669.15	novel	4867	20	NA	NA	2125	-5	intron_retention	TRUE	canonical	0	0	junction_16	191.113584927263	27	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGAGGCTGTGAAACGT	NA	False	NA	NA	False	NA	NA	NA	5015030	4995539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5011390_5011877_5012244_5013290_5014527_5014954
453	chr19	+	5010	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1091.93340456275	1	153	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1486	False	NA	NA	False	NA	NA	NA	44282531	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283368_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
454	chr19	-	5012	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	-180	0	-10	0	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	1619	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	7260	False	NA	NA	False	NA	NA	NA	44396328	44382893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
457	chr10	+	5163	9	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-26	0	intron_retention	FALSE	non_canonical	0	0	junction_7	749.610023612278	10	53	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	False	NA	NA	False	NA	NA	NA	128173652	128198348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128174245_128174294_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189503_128193563_128196023_128196836
458	chr11	-	4211	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	773.33649644556	2	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAACAATGGCGTGATGCT	NA	False	NA	NA	False	NA	NA	NA	100418695	100367189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373004_100373046_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
459	chr4	+	3163	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-24	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	181.304682110259	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146093369	146135324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535_146132094_146132178_146132777_146132942_146133855_146134713
460	chr2	+	5282	42	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	206.776416970384	8	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGTCATGTGGCAACT	4886	False	NA	NA	False	NA	NA	NA	30176446	30234275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30199907_30206546_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
461	chrX	+	3593	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	33	445	33	-445	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	4474	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGAAGTATGTCTAGAGT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
463	chrX	-	4513	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	8	3	8	-3	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	62	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACATGGTTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	105055497	105011692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
464	chr6	+	6231	43	FSM	ENSMUSG00000038759.16	ENSMUST00000043815.16	6412	43	188	-7	2	7	multi-exon	FALSE	canonical	2	193	junction_5	62.1117418909309	462	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGGTCATTCTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	35154552	35224538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191746_35192008_35192134_35196619_35196735_35200447_35200598_35201080_35201153_35201456_35201615_35202118_35202200_35202724_35202917_35204237_35204506_35204599_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
465	chrX	-	4842	16	FSM	ENSMUSG00000025266.12	ENSMUST00000112691.9	4869	16	27	0	27	0	multi-exon	FALSE	canonical	3	473	junction_8	38.4461528201024	666	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800291	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
466	chr18	+	5218	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26629	1910	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	448.35356401767	8	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6456	False	NA	-66	True	NA	NA	NA	77126274	77243406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77200367_77200425_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
467	chr1	-	5855	25	NIC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	5	-1864	intron_retention	FALSE	canonical	2	23	junction_21	316.247966067241	3	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAAAATGCTAATTTGTG	NA	False	NA	NA	False	NA	NA	NA	55066548	55026195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055342_55055534_55055650_55055937_55056043_55058392_55058560_55066497
468	chr10	+	599	1	ISM	ENSMUSG00000112639.2	ENSMUST00000217956.2	1770	2	122	3701	16	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATACTGTCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	126906365	126906964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_126906400_126907000
469	chr2	+	5768	43	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	0	-24	intron_retention	FALSE	non_canonical	0	0	junction_7	203.629944249394	1006	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAAGTGCTGTTTATAG	4878	False	NA	NA	False	NA	NA	NA	30176438	30234254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194292_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472
470	chr5	+	4123	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	0	intron_retention	FALSE	non_canonical	0	0	junction_4	730.602017923404	1	62	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255471_108255511
471	chr19	+	4798	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-22	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	1009.02038576477	2	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	1447	False	NA	NA	False	NA	NA	NA	44282492	44295298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44294549_44294820
472	chr11	-	6302	26	NNC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	4577	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	98.7967610805131	6	57	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATGTCTGTTTTCCGAT	NA	False	NA	NA	False	NA	NA	NA	68894700	68876527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_68877810_68878183_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881986_68882163_68882320_68882510_68882595_68882681_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521
473	chr17	-	5309	8	Antisense	novelGene_ENSMUSG00000098269.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	94	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTCCCGCCTTCCCGGCC	NA	False	NA	NA	False	NA	NA	NA	35472635	35460746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35460827_35462086_35462426_35463110_35463238_35463429_35463523_35465910_35466096_35467925_35471829_35471935_35472331_35472448
474	chr18	+	5011	13	NIC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	1	-16	intron_retention	FALSE	canonical	3	826	junction_2	197.032763068029	44	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCAATAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35695272	35724456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35695346_35704895_35705989_35710610_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
475	chrX	-	1821	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	4	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	135644435	135633690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
476	chr5	-	4372	12	FSM	ENSMUSG00000029405.17	ENSMUST00000164378.8	3026	12	211	-1557	211	4	multi-exon	FALSE	canonical	3	7	junction_11	607.25013567123	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTATGTCCCTAATTT	NA	False	NA	NA	False	NA	NA	NA	92230886	92200018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92230608
477	SIRV6002	+	6000	1	FSM	SIRV6002A	SIRV6002	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	783	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6002_+_0_6000
478	chr5	-	4159	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	59	14	15	4	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	32	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTATGTCCCTAATTT	NA	False	NA	NA	False	NA	NA	NA	92231357	92200018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
481	chr6	-	2164	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	226	1569	3	553	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGAGAGGTTCAGGAG	8916	False	NA	NA	False	NA	NA	NA	122719478	122706336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
482	chr5	-	4282	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	-99	-1	-99	1	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	1555	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTATGTCCCTAA	NA	False	NA	NA	False	NA	NA	NA	92231677	92200021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
484	chrX	-	4628	22	NNC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	-336	1658	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	301.288645774384	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGGAAGATATTT	7819	False	NA	NA	False	NA	NA	NA	37653875	37620492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37652887_37653019_37653086_37653809
485	chr8	-	4786	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-5	-256	intron_retention	FALSE	canonical	3	77	junction_15	202.704924459175	924	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCCTGCGTGTGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	111573413	111537126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111556150_111556180_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
486	chrX	+	3271	24	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	719.974267025971	10	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529258_20535098_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
490	chrX	+	3433	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	10	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	712.198889075236	11	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529146	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538246_20538494_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
491	chr1	+	4631	25	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	27	2	combination_of_known_junctions	FALSE	canonical	3	51	junction_14	56.9085371207363	273	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACTTTGTCTTTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	128031094	128165475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128118374_128118477_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
493	chr10	+	8379	29	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	510	-10	at_least_one_novel_splicesite	FALSE	canonical	3	115	junction_4	94.4797988882236	738	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGATAAAAGACTCAAGATT	NA	False	NA	NA	False	NA	NA	NA	127932758	127965161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949328_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
494	chr17	-	4721	16	FSM	ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	27	-435	2	435	multi-exon	FALSE	canonical	3	40	junction_8	9.77525219907679	123	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAGTCCACCACAACCGG	NA	False	NA	NA	False	NA	NA	NA	79189975	79159557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181371_79181509_79183610_79183732_79185570_79185703_79189828
495	chr9	-	6985	17	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6363	37230	intron_retention	FALSE	non_canonical	0	0	junction_1	0	23	140	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCCACGCGGTT	5020	False	NA	NA	False	NA	NA	NA	21316653	21279307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305584_21306124_21306237_21307313_21307425_21307509_21307624_21308765_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21315486_21315989
496	chr4	+	5585	27	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	10	-5	intron_retention	FALSE	canonical	3	45	junction_1	359.518613059317	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGACCTTTATCCGGAGT	580	False	NA	NA	False	NA	NA	NA	137321527	137385836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137321828_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
497	chr9	+	2929	15	Antisense	novelGene_ENSMUSG00000032480.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	33	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAATCTGAATCACTTTG	NA	False	NA	NA	False	NA	NA	NA	109913387	109921403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_109913715_109913796_109913936_109914016_109914115_109914203_109914368_109914473_109914641_109914751_109914963_109915006_109915099_109915186_109915392_109915595_109915778_109916002_109916107_109916189_109916264_109916497_109917332_109917611_109917776_109920488_109920637_109921383
499	chr11	-	4015	28	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_23	933.825259838375	1	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	NA	False	NA	NA	NA	100418695	100367178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407676_100410583_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
500	chr17	+	4637	4	FSM	ENSMUSG00000071172.14	ENSMUST00000147265.9	4010	4	24	-651	0	-3	multi-exon	FALSE	canonical	3	1420	junction_1	325.271510519374	140	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGAGTTGTGTCTAGAA	NA	False	NA	NA	False	NA	NA	NA	29251646	29261868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29260268_29260357
501	chr13	+	4758	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	11	-7	at_least_one_novel_splicesite	FALSE	canonical	1	66	junction_1	364.511447064866	310	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835677	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49836121_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
502	chrX	+	3394	25	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	668.84539298871	6	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548686
503	chr9	+	5269	27	NIC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	43	-1	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	777.694571251366	3	142	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569670	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
504	chr19	-	4681	7	NNC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.682809261507	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	7494	False	NA	NA	False	NA	NA	NA	44396094	44382893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44385977_44386073_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
506	chr11	-	3881	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-8	intron_retention	FALSE	non_canonical	0	0	junction_8	1271.75549536851	9	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCCATTCTCTTCATTT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676981_106677186_106677273_106677901_106679098
509	chr7	+	4647	6	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-18	-248	intron_retention	FALSE	non_canonical	0	0	junction_2	318.60910219264	238	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868617	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868745_103874713_103875086_103876351_103877584_103879934_103879958_103880995_103881097_103881319
510	chr5	+	3618	18	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	-217	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	770.21599451108	2	25	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAATTTTAACTGAACAC	NA	False	NA	NA	False	NA	NA	NA	108208609	108256653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255168_108255553
513	chr6	-	3341	12	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-53	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3625.30829467026	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATGTATGTGTCATGTC	8992	False	NA	NA	False	NA	NA	NA	122719402	122704791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705332_122705383_122705426_122705665_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
514	chr13	+	4284	35	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	55	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_34	447.863868806917	6	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATACTGTGTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	49835721	49887734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134_49887333_49887424
516	chr6	+	6308	44	NNC	ENSMUSG00000038759.16	novel	6412	43	NA	NA	3	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_39	91.4794039183987	454	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGGTCATTCTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	35154553	35224538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191746_35192008_35192134_35196619_35196735_35200447_35200598_35201080_35201153_35201456_35201615_35202118_35202200_35202724_35202917_35204237_35204506_35204599_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35219310_35219389_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
518	chr11	+	9155	55	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	1	3	junction_50	39.807290417339	217	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGAGCCACCGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	84070645	84292470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_84070753_84083904_84083952_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246_84191292_84197942_84197985_84202092_84202309_84203552_84203709_84206599_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
519	chr14	+	4695	21	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	364.784302705037	41	19	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTAAAGCTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	19801351	19861841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829658_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
520	chr1	-	6155	24	NIC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-1	-1850	intron_retention	FALSE	canonical	2	1032	junction_2	150.157661314426	38	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGTTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	55066641	55026181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
521	chr6	-	3473	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	12	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122704930_122705174_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
522	chr10	-	5965	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_24	266.812928638942	676	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTGGAGTGGGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	121462222	121423284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462034
523	chr5	-	4065	12	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	503.721325291792	139	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTATGTCCCTAA	NA	False	NA	NA	False	NA	NA	NA	92231578	92200021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202762_92202879_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
528	chr6	+	5203	19	Intergenic	novelGene_4192	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	278	12	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTATTGAGGGGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	82702005	82751437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_82703262_82703575_82704436_82705692_82705931_82706528_82706680_82707746_82707932_82708027_82708128_82709080_82709178_82711828_82711951_82712229_82712377_82713510_82713818_82715268_82715502_82716499_82716654_82719781_82719966_82720246_82720348_82720924_82721022_82721842_82721963_82726169_82726321_82737086_82737246_82750896
529	chrX	+	4587	9	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-44	-5	intron_retention	FALSE	canonical	3	3075	junction_4	325.801295846103	11	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473296	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
530	chr13	+	4422	34	NIC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	13	-5	combination_of_known_junctions	FALSE	canonical	1	120	junction_1	357.515439185776	587	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTTGGAAGTAGTTA	NA	False	NA	NA	False	NA	NA	NA	49835679	49887738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
532	chrX	+	3566	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-482	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	691.063065139499	1774	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCCAGATGTAGCCATCC	NA	False	NA	NA	False	NA	NA	NA	20524659	20548936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524865_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
533	chr18	+	5002	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26827	1908	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	341.46650267483	17	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGAGTCTGACATTGAT	6258	False	NA	NA	False	NA	NA	NA	77126076	77243404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
534	chr10	+	5299	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	3	5	0	-3	multi-exon	FALSE	canonical	3	294	junction_10	195.138687701892	647	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAATAGCTGGTCTCTGTT	2793	False	NA	NA	False	NA	NA	NA	20188217	20218242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
537	chr8	+	4349	17	NNC	ENSMUSG00000000303.13	novel	3203	17	NA	NA	-1	-9	intron_retention	FALSE	non_canonical	0	0	junction_16	254.482563253359	565	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5048	False	NA	NA	False	NA	NA	NA	107329981	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395840_107395912
538	chrX	-	5669	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	-2	0	-2	0	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	600	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTCTGGTGGAAATCA	9859	False	NA	NA	False	NA	NA	NA	103457454	103324262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
539	chr13	+	4363	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	454.426477358165	1239	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTGGAAGTAGTTATT	NA	False	NA	NA	False	NA	NA	NA	49835671	49887740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876180_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
540	chrX	+	3318	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	757.59821963888	11	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548403_20548726
541	chr10	-	4684	6	NIC	ENSMUSG00000075232.7	novel	3204	8	NA	NA	-56	-9	intron_retention	FALSE	canonical	3	315	junction_2	50.7881876030244	3	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATTGAGAAAGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	40178109	40163462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_40166270_40166373_40166612_40167989_40168033_40169159_40170304_40170712_40170800_40177744
543	chr11	-	4215	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	925.026576424611	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410517_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
545	chr19	-	4388	22	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	0	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	398.332852303811	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACTAAAAAATAAAAATGT	8739	False	NA	NA	False	NA	NA	NA	60779096	60750266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769831_60769956_60770322_60770460_60770605_60770797_60778906
546	chr6	-	3336	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122704850_122705231_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
549	chr8	+	4286	17	NNC	ENSMUSG00000000303.13	novel	3203	17	NA	NA	-5	-9	intron_retention	FALSE	non_canonical	0	0	junction_16	254.482563253359	4	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5072	False	NA	NA	False	NA	NA	NA	107330005	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395179_107395290
550	chr2	+	5612	44	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	-8	-14	at_least_one_novel_splicesite	TRUE	canonical	1	18	junction_34	202.641963271502	926	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTATAGAGCCTGTGTC	4860	False	NA	NA	False	NA	NA	NA	30176420	30234264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229582_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
551	chr2	-	5559	17	Antisense	novelGene_ENSMUSG00000038116.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	413	7	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCACGTGACCCCGGGGA	2421	False	NA	NA	False	NA	NA	NA	156151873	156038655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_156038716_156065252_156065373_156093698_156093868_156106200_156106279_156109072_156109461_156114459_156114574_156115600_156115790_156118406_156118587_156129718_156130000_156134385_156134484_156135332_156135498_156136015_156136194_156138566_156138667_156140438_156140636_156144700_156145098_156146548_156146728_156149207
555	chrX	+	7049	37	NNC	ENSMUSG00000031314.19	novel	7210	38	NA	NA	109	-5	intron_retention	FALSE	canonical	0	0	junction_3	64.1484762576075	4	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAATCGAGAGTGATTTTA	4224	False	NA	NA	False	NA	NA	NA	100576473	100644635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100576608_100577100_100577216_100577350_100577468_100584330_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
556	chr14	+	5323	22	NIC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	-348	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_18	475.201258234513	476	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	NA	False	NA	NA	NA	19800984	19861855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19856579_19856679_19857994_19858153_19860047_19860172_19861021_19861135_19861253
557	chr11	+	4985	28	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	6994	2	1568	0	3prime_fragment	FALSE	canonical	3	289	junction_1	132.920977586605	28	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTTCTTGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	75384639	75400273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
558	chr5	-	7478	32	NIC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	32	-5	combination_of_known_junctions	TRUE	canonical	2	76	junction_16	43.795262003845	305	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGAACTCTGGTGATA	9642	False	NA	NA	False	NA	NA	NA	135518080	135435393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
559	chr14	+	4801	21	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	366.369540218616	5	66	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	NA	False	NA	NA	NA	19801332	19861855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831357_19839736_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
561	chr13	+	4606	35	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	38	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_34	453.135626709898	6	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835704	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49836121_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134_49887191_49887315
562	chr8	-	5301	25	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-5	-260	intron_retention	FALSE	canonical	3	77	junction_15	206.852940247145	2	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTGTCCTGCGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	111573413	111537130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111556150_111556180_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111568576_111569319_111569647_111571094_111571232_111573306
563	chr5	+	5135	4	ISM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	172	7	15	-4	intron_retention	FALSE	canonical	3	1984	junction_3	115.661383164631	19	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTATCTTTCATTTATT	NA	False	NA	NA	False	NA	NA	NA	34493804	34510776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007
564	chr6	-	5551	18	FSM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	-44	6	-44	-6	multi-exon	FALSE	canonical	3	435	junction_14	56.0328005768445	660	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATATTCAGTGTGTGA	9354	False	NA	NA	False	NA	NA	NA	82751479	82702011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
565	chr19	+	2569	17	Antisense	novelGene_ENSMUSG00000024853.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	50	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCATATCCTGAGGCGGCC	NA	False	NA	NA	False	NA	NA	NA	5323973	5341366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5324558_5324821_5325004_5325089_5325192_5329296_5329401_5329499_5329641_5329869_5329977_5333669_5333781_5333887_5333975_5334601_5334755_5336218_5336445_5336604_5336685_5336837_5336977_5337096_5337313_5337561_5337652_5337930_5338034_5338332_5338444_5341333
566	chr11	-	6144	32	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	-17	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	272.500946546772	2	145	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTACTCCAATTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	86648344	86585521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586517_86588090_86588167_86593018_86593257_86593426_86593598_86594489_86594602_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
567	chr2	+	4895	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	-203	15	-203	-15	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	1667	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGATATATTTTATCACA	6870	False	NA	NA	False	NA	NA	NA	23046177	23089257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
568	chrX	+	3509	27	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	21	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	909.103623317493	1	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529157	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538207_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541863_20541932_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
570	chr11	-	4087	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	773.33649644556	356	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	NA	False	NA	NA	NA	100418695	100367178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100367590_100367767_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
571	chr2	-	7088	39	FSM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	5	14	5	5	multi-exon	FALSE	canonical	3	201	junction_33	52.8048791605273	432	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTTGTTTACAGATGTT	NA	False	NA	NA	False	NA	NA	NA	126718145	126633498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
572	SIRV6003	+	6000	1	FSM	SIRV6003A	SIRV6003	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	730	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6003_+_0_6000
574	chr8	+	4328	16	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_14	254.092424129489	257	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392140_107392886_107392963_107395037
575	chr19	+	5001	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	12	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1087.97874979248	2	149	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCAAAATGTCTCGTGG	1481	False	NA	NA	False	NA	NA	NA	44282526	44295293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286632_44288099_44288254_44289650_44289884_44291439
576	chr8	-	4745	25	NIC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-5	-268	intron_retention	FALSE	canonical	3	597	junction_22	100.740453090548	897	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTTTAAGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	111573413	111537138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_111537714_111538022_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
577	chr13	+	4365	34	FSM	ENSMUSG00000037851.14	ENSMUST00000165316.8	4426	34	54	7	24	-7	multi-exon	FALSE	canonical	1	598	junction_17	241.366305222171	344	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835629	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
578	chr13	+	5686	23	NNC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-6	0	intron_retention	FALSE	non_canonical	0	0	junction_19	106.889299343057	600	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTCTCAGATTATCTTT	NA	False	NA	NA	False	NA	NA	NA	55782833	55829069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823932_55824582_55824728_55825333_55825408_55826596
579	chr3	+	3261	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	2219	1	587	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGAGTGGGCTGTG	NA	False	NA	NA	False	NA	NA	NA	41510166	41569080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
581	chr14	+	3772	27	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-55	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	251.505361266042	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAAAATGAGTTTTATGC	1776	False	NA	NA	False	NA	NA	NA	121148580	121185352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130_121184512_121185253
584	chr7	+	4324	24	NIC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	-6	2	intron_retention	FALSE	canonical	0	0	junction_2	195.568880820947	6	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCTTGATCTGATTGC	7233	False	NA	NA	False	NA	NA	NA	109617515	109655324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650735_109651917_109652125_109653206_109653324_109654223
586	chr11	-	3758	24	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	995.222751519366	2	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	747	False	NA	NA	False	NA	NA	NA	100414449	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100412803_100412931_100414265
587	chr14	+	3787	25	NIC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	3	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_24	246.808911688555	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGGCCTGTGTAGAACT	1834	False	NA	NA	False	NA	NA	NA	121148638	121184825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121184130
588	chr3	+	4046	21	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	4965.7784311727	86	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGACACTAGCACCTAGCG	NA	False	NA	NA	False	NA	NA	NA	102927935	102965492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201_102964273_102964340
589	chr12	+	3907	2	Intergenic	novelGene_4377	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGCCTTGATCAGAGTAA	NA	False	NA	NA	False	NA	NA	NA	68605039	68610257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68608841_68610151
590	chr3	+	3975	19	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	9	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5018.70257968465	1	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTAGCACCTAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	102927944	102965495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950923_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
591	chr1	+	4811	30	NIC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	21	-13	intron_retention	FALSE	canonical	3	44	junction_6	564.200890171992	1	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTATTTTATCTATTT	NA	False	NA	NA	False	NA	NA	NA	185095275	185160544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048
592	chr19	+	4560	26	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	980	-3	-35	3	3prime_fragment	FALSE	canonical	3	2606	junction_3	269.249101019855	5	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	1350	False	NA	NA	False	NA	NA	NA	10583670	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
593	chrX	+	3390	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	783.698754369305	17	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541980_20542190_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
594	chr14	+	4018	27	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-36	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	327.555993677543	2	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAAGAGGCCTGTGTAG	1795	False	NA	NA	False	NA	NA	NA	121148599	121184821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121169375_121169430_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
595	chr8	+	2181	6	Antisense	novelGene_ENSMUSG00000058355.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	323	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTGCAAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	80410273	80415811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_80411897_80412562_80412686_80414069_80414193_80414292_80414432_80414519_80414634_80415752
597	chr3	+	5917	17	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	87	-1113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	300.989818920425	1629	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAATCGCCTTGCTGAA	NA	False	NA	NA	False	NA	NA	NA	63883613	63928887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053_63925552_63926539
598	chr13	-	9608	14	FSM	ENSMUSG00000021614.17	ENSMUST00000159910.8	8332	14	-254	-1022	-67	-6	multi-exon	TRUE	canonical	3	34	junction_8	8.56786344567119	148	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTACATTGTGACTTGTC	2539	False	NA	NA	False	NA	NA	NA	89890695	89803436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89836403_89841621_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
599	chrX	+	3378	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	781.888497421467	99	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCAGATGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	20524659	20548935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535438_20536466_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
601	chr6	-	5556	19	NIC	ENSMUSG00000053470.14	novel	4853	26	NA	NA	894	-5	intron_retention	FALSE	canonical	3	43	junction_16	144.377676876472	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTCGCTGTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	71597487	71566025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71593801_71593855_71596941_71597031_71597121
602	SIRV7	-	2459	5	FSM	SIRV7A	SIRV701	2462	5	5	-2	0	-1	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147918	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
603	chr2	-	8073	3	Antisense	novelGene_ENSMUSG00000085438.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	224	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGTCCGCCAACCCAG	4908	False	NA	NA	False	NA	NA	NA	119437953	119424813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119424921_119426742_119426824_119430068
604	chr14	+	3891	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-40	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	253.688451451776	4	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	1791	False	NA	NA	False	NA	NA	NA	121148595	121184828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176926_121178274_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
605	chr8	+	4297	19	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-4	-2098	intron_retention	FALSE	canonical	2	49	junction_1	763.907848249567	6	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760529	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760652_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111780641_111780756_111780844_111781140_111781255_111781650
607	chr2	-	4527	4	NNC	ENSMUSG00000038914.16	novel	4613	6	NA	NA	-59	-74	intron_retention	FALSE	non_canonical	0	0	junction_1	84.7230783199005	4	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATGACTGCATTCTCAAA	NA	False	NA	NA	False	NA	NA	NA	180351851	180326890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_180329915_180330279_180331449_180333656_180333842_180351702
609	chr6	-	1932	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCAAATCAGCCTATCT	7483	False	NA	NA	False	NA	NA	NA	122691581	122684572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688765_122689580_122689666_122690322
610	chrX	+	3319	24	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	672.526298317149	19	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547711_20548616
611	chr6	+	6184	25	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	92	junction_11	72.2910782877113	17	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	83891355	83963853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
612	chr11	+	3818	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	0	540	0	-1	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAAGAAAAAAGAGAAGCT	NA	False	NA	NA	False	NA	NA	NA	72332180	72342054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
615	chr10	-	5459	13	Antisense	novelGene_ENSMUSG00000037608.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	468	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGTGGCCTTCCAGGCC	NA	False	NA	NA	False	NA	NA	NA	20218247	20188212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20188349_20193751_20193856_20197746_20197861_20198706_20199613_20200883_20201550_20201673_20201844_20203845_20203952_20205050_20205139_20207829_20208005_20209134_20209319_20210244_20210391_20215453_20215666_20215795
620	chrX	+	3556	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	22	-477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.240848899017	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTAGCCATCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	20529158	20548941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529360_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535491_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
621	chr6	-	1105	1	NIC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	1828	503	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTGAAGTTCAAATCCC	NA	False	NA	NA	False	NA	NA	NA	122717393	122716288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122716300_122717400
622	chr18	-	3911	31	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	-6	intron_retention	FALSE	canonical	0	0	junction_19	410.286378304499	1446	15	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTTTGGGCCATGTTA	NA	False	NA	NA	False	NA	NA	NA	42395156	42335417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369643_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
623	chr11	-	3629	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1169.63592091727	6	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCATTCTCTTCATTTAT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106678984
625	chr2	-	7140	17	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	0	-4	intron_retention	FALSE	canonical	3	383	junction_14	730.032980312362	45	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCCACAAGAAAATTTTCG	NA	False	NA	NA	False	NA	NA	NA	156022116	155989172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156019306_156020799_156020873_156021096_156021161_156021806
627	chrX	+	1982	16	ISM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	95	7166	0	-5187	5prime_fragment	FALSE	canonical	3	1167	junction_1	478.482211442251	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCCATCCCCATTTGT	NA	False	NA	NA	False	NA	NA	NA	20524659	20542252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117
628	chr12	-	1245	5	NIC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-160	intron_retention	FALSE	canonical	3	11114	junction_1	618.781261836523	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTTGATCTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	110662743	110660253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
629	chr7	+	1910	1	ISM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	12815	0	10466	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTGAGTATGGGTAG	34	False	NA	NA	False	NA	NA	NA	44478326	44480236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44478300_44480200
630	chr19	+	4153	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1055.14014044407	1	78	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAACTCTTATTGGTCT	670	False	NA	NA	False	NA	NA	NA	10582990	10607179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585259_10585599_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599538_10599653_10599856_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
631	chr4	+	3643	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43254	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	128.284406257693	12	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533619	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147578832_147578938_147591995_147592098_147595209_147595337_147596801_147597042_147597711
632	chr19	+	5080	23	NIC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-9	-6	intron_retention	FALSE	canonical	3	992	junction_1	106.357585297962	26	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	1884	False	NA	NA	False	NA	NA	NA	8875455	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
636	chr13	+	4220	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-27	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	461.331898196784	1	59	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835639	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873115_49874592_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878749_49879641_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
638	chr18	-	3503	26	NIC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	-12	-2118	intron_retention	FALSE	canonical	1	536	junction_14	308.638392945531	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAACCCTGCGGAGCCACT	NA	False	NA	NA	False	NA	NA	NA	42395168	42349941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
639	SIRV1	-	805	3	ISM	SIRV1A	SIRV101	1561	6	4041	0	3621	0	3prime_fragment	FALSE	canonical	3	1611	junction_2	1290	13	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	6745	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV1_-_1485_6337_6474_6560
640	chr11	+	4099	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	0	-156	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	742.546375656093	2	116	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTTCCACTGGAGAGCC	NA	False	NA	NA	False	NA	NA	NA	72332180	72342438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333314_72333496_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702_72341807_72341913
641	chr19	-	5037	23	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	389.633004376135	59	41	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	8740	False	NA	NA	False	NA	NA	NA	60779095	60749554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755282_60755383_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
642	chr18	+	3717	15	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	20	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	327.044214697871	29	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGTCATGTTGATTGGT	NA	False	NA	NA	False	NA	NA	NA	35695291	35724476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715820_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
643	chr11	-	1242	6	ISM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	21	29420	-11	-2031	5prime_fragment	FALSE	canonical	3	142	junction_4	515.263583032995	3	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTTCAGCTATGCTAT	8487	False	NA	NA	False	NA	NA	NA	102771772	102758718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
646	chr14	-	3812	9	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	4	intron_retention	FALSE	canonical	3	157	junction_8	1513.80290989283	190	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAGCTGGTGTGTACAA	8754	False	NA	NA	False	NA	NA	NA	52341456	52310997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
647	chr4	+	3295	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10	novel	1244	3	NA	NA	7	2578	multi-exon	TRUE	non_canonical	0	0	junction_1	134.040313173148	10	86	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147216501	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216649_147578832_147578914_147592042_147592098_147595209_147595337_147596801_147597070_147597736_147598853_147599020
648	chr4	-	1393	4	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.117073382335	376	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41094732_41094839_41095144_41095272_41098001
649	chr4	-	3477	6	Antisense	novelGene_ENSMUSG00000078496.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	100	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAAATGCTGGGACGACTG	NA	False	NA	NA	False	NA	NA	NA	147600480	147576867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147577068_147578808_147578968_147591948_147592096_147595207_147595336_147596800_147598238_147599074
651	chr13	+	4329	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-28	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	374.413240369274	1215	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835638	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878779_49879630_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
653	chrX	+	5344	12	NIC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-5	1	intron_retention	FALSE	canonical	3	982	junction_9	98.4644081352317	15	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139642	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
654	chr11	+	3474	24	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-7	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	572.118399580014	10	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332195	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338796_72339969_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
657	chr18	-	4619	26	FSM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	-27	3	3	-3	multi-exon	FALSE	canonical	2	549	junction_9	234.649375878139	1396	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTTTGCCTTCCCCATG	NA	False	NA	NA	False	NA	NA	NA	60982028	60946829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
660	chr1	+	4782	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	95	29	7	-29	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	1	100	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAACCATGAACTAAT	NA	False	NA	NA	False	NA	NA	NA	185095335	185160528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
661	chr9	-	4864	4	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-28	-7	intron_retention	FALSE	canonical	0	0	junction_3	2274.39618360566	11	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATGTGAGTAGTGCC	NA	False	NA	NA	False	NA	NA	NA	110775190	110768677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771507_110771597_110771990_110772038
662	chr19	-	3585	23	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24168	-6562	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCCCCTGAGACACGTTG	NA	False	NA	NA	False	NA	NA	NA	10607186	10582957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604104_10606527
663	chr8	+	4334	16	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_12	261.680942285745	269	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390523_107390825_107391056_107392025_107392157_107392818_107392963_107395037
664	chr19	+	2543	12	Antisense	novelGene_ENSMUSG00000096592.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATCCTTAACACTAATCA	NA	False	NA	NA	False	NA	NA	NA	40538700	40562284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40539773_40541966_40542064_40543034_40543224_40545864_40545985_40546094_40546294_40551348_40551482_40553277_40553500_40555014_40555112_40556767_40556843_40557479_40557619_40558906_40559036_40562213
665	chr5	-	4050	11	NNC	ENSMUSG00000029405.17	novel	4232	11	NA	NA	-69	-1	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_10	510.187455745435	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTTATCTATGTCCCT	NA	False	NA	NA	False	NA	NA	NA	92231191	92200023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231131
666	chrX	+	3361	24	NIC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	6	-473	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	739.592592085961	2	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529142	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
668	chr18	-	4747	10	NIC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	-2	0	intron_retention	FALSE	canonical	3	3478	junction_9	629.025701647662	34	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649572	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64634947_64636578_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
672	chr19	+	4172	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	277	10	17	-10	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTAAGAAGAAACTCTTAT	647	False	NA	NA	False	NA	NA	NA	10582967	10607173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
674	chr14	-	3869	9	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-10	4	intron_retention	FALSE	canonical	3	157	junction_8	1603.03828225498	269	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAGCTGGTGTGTACAA	8736	False	NA	NA	False	NA	NA	NA	52341474	52310997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52334778_52336002_52341345
675	chr5	-	3977	12	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	-25	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	503.721325291792	413	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTATGTCCCTAATTT	NA	False	NA	NA	False	NA	NA	NA	92231542	92200018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92200841_92201013_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
676	chr19	-	6762	53	NNC	ENSMUSG00000048612.17	novel	6633	54	NA	NA	-12	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	30.1745109234177	271	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGGATGTTTGTCCTC	8844	False	NA	NA	False	NA	NA	NA	38031859	37887680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37919429_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
677	chr11	+	6253	22	NIC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	-16	-9	intron_retention	FALSE	canonical	3	11	junction_2	107.666845685494	6	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGAAATGTTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	45946868	46038161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_45947038_45951749_45951836_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
678	chr11	-	4125	27	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1049.73027600754	3	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGATGCTCTTTTATGTT	NA	False	NA	NA	False	NA	NA	NA	100418695	100367179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369234_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100407618_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
679	chr19	+	3593	23	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-16	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	730.781004154499	13	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCTTATTGGTCTCTG	614	False	NA	NA	False	NA	NA	NA	10582934	10607182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596483_10599708_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
680	chr7	-	4285	24	Antisense	novelGene_ENSMUSG00000064451.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	19	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAAGAGAAGCGCCAAG	9888	False	NA	NA	False	NA	NA	NA	109655809	109617525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109617716_109626277_109626358_109628895_109629046_109630808_109630978_109636154_109636306_109638368_109638461_109639812_109639906_109640017_109640105_109641187_109641323_109641992_109642092_109643614_109643697_109643828_109643940_109645366_109645458_109645883_109646048_109646191_109646352_109647331_109647463_109647998_109648065_109648148_109648276_109648797_109648899_109649984_109650081_109650217_109650441_109650527_109650732_109651914_109652113_109654524
682	chr11	-	3742	24	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGCTCAGAAGACAGTCA	NA	False	NA	NA	False	NA	NA	NA	72342022	72332195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72332402_72332503_72332598_72333223_72333308_72333393_72333469_72333568_72333673_72334296_72334476_72334564_72334733_72334826_72334945_72335505_72336110_72336430_72336556_72336715_72336888_72336983_72337082_72337795_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339203_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
683	chr2	+	5571	12	NIC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	68	-13	intron_retention	FALSE	canonical	3	2736	junction_7	175.535591267563	44	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACACATTGTAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	162901336	162926595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
684	chr1	+	6998	9	NIC	ENSMUSG00000026349.15	novel	6738	9	NA	NA	45	-5	intron_retention	FALSE	canonical	3	50	junction_6	145.842166399159	410	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAATCCAAGGCTGAAACA	NA	False	NA	NA	False	NA	NA	NA	127701945	127735793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725934_127727126_127727291_127729342_127729414_127729898
685	chr11	-	8433	36	NNC	ENSMUSG00000020315.19	novel	8461	36	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	121.31078657224	348	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCCTATGACTAGCCGGT	1822	False	NA	NA	False	NA	NA	NA	30148255	30049397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_30050715_30051612_30051656_30053247_30053422_30054435_30054675_30059088_30059153_30059870_30059981_30060725_30060923_30062826_30062912_30063855_30063995_30064675_30064921_30067635_30068011_30068290_30068496_30069376_30069508_30070529_30070812_30070975_30071066_30071475_30071701_30073798_30074063_30074865_30075013_30079569_30079661_30085939_30086143_30086873_30087141_30087281_30087631_30088363_30088502_30088591_30089463_30090470_30090625_30092119_30092423_30093018_30093178_30094105_30094224_30095828_30096017_30096738_30096852_30099499_30099616_30099929_30100011_30101555_30101648_30104228_30104403_30109293_30109446_30147723
686	chr8	-	4395	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	1	-253	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	178.034585404073	772	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTGTGTAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	111573418	111537123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573193
687	chr4	+	4078	10	Intergenic	novelGene_2052	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	221.168613405147	2	135	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	2317	False	NA	NA	False	NA	NA	NA	146289375	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146429869_146429973_146435241_146435318_146797298_146797381_146800390_146800518_146802050_146802609_146802693_146803365_146803449_146804294_146804633
688	chr11	+	4074	25	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-31	-220	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	566.190063053035	1	96	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGACGCCAATCTCTGA	NA	False	NA	NA	False	NA	NA	NA	72332149	72342374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72337792_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
689	chr8	+	4455	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	-27	2	-27	-2	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	1502	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGAGGCTCACTTGATT	5022	False	NA	NA	False	NA	NA	NA	107329955	107396876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
690	chr5	+	5330	11	FSM	ENSMUSG00000039191.13	ENSMUST00000037618.13	5459	11	126	3	-28	1	multi-exon	FALSE	canonical	3	36	junction_1	139.803576492163	652	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTAGATGTCTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	53747681	53814701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_53747829_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
691	chr14	-	1789	9	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	429	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGCAGGCAAGAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	63380584	63370826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63370913_63371410_63371498_63373054_63373170_63373853_63373974_63375480_63375566_63375797_63375942_63376445_63376561_63379178_63379311_63379679
692	chr19	+	5591	22	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-15	-16	intron_retention	FALSE	non_canonical	0	0	junction_14	274.001895155404	2	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACATAAATAATAATTGG	1878	False	NA	NA	False	NA	NA	NA	8875449	8894020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889940_8890072_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
693	chr14	+	2347	14	ISM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	15775	2	12402	-2	3prime_fragment	FALSE	canonical	3	463	junction_1	48.821253495782	38	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32059750	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
694	chr6	-	5013	14	NNC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	30.3428144794207	443	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTGCCCTCATTTGGT	9664	False	NA	NA	False	NA	NA	NA	38331538	38282234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38283159_38283405_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
695	chr19	+	3549	23	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-14	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	969.935821554129	85	34	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	652	False	NA	NA	False	NA	NA	NA	10582972	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585279_10591478_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599043_10599178_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
696	chr15	-	1842	12	Intergenic	novelGene_3338	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4093	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGATCCCGTGGTGCTG	6842	False	NA	NA	False	NA	NA	NA	85347409	85220538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_85220786_85243658_85243844_85249472_85249559_85259520_85259620_85260744_85260904_85267104_85267184_85271189_85271356_85275836_85275947_85277536_85277708_85322302_85322367_85346480_85346669_85347121
697	chr10	-	2745	12	NNC	ENSMUSG00000035835.15	novel	3063	9	NA	NA	2846	1681	intron_retention	FALSE	non_canonical	0	0	junction_1	0	14	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGCTGACACACGTGG	NA	False	NA	NA	False	NA	NA	NA	79700269	79694627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79694656_79694782_79695105_79695183_79695354_79695432_79695544_79695612_79695789_79695949_79696025_79696653_79696802_79697845_79697881_79698281_79698375_79698485_79698704_79698811_79698890_79698978
699	chr9	+	5256	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	-38	-3905	0	-6	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	270	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAAGTTGCCTTGGTTGT	740	False	NA	NA	False	NA	NA	NA	22137009	22154644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
700	chr13	+	4370	34	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	25	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	453.907242863525	3	51	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGATACTGTGTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	49835691	49887732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846614_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
702	chr2	+	5599	43	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	10217	-3	at_least_one_novel_splicesite	FALSE	canonical	2	34	junction_21	201.665588629266	904	39	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGTCATGTGGCAACT	1829	False	NA	NA	False	NA	NA	NA	30186657	30234275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216497_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
703	chr1	-	2486	13	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	21	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	304.84203559658	1538	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGCTTTGTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	177624046	177590745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612544_177623792
706	chr15	-	4082	17	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	-14	1	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_4	530.006688489636	1864	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96953851	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96898211_96898347_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
707	chr11	+	3806	24	NNC	ENSMUSG00000040463.17	novel	4448	25	NA	NA	-22	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	773.175767523674	1	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332158	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336884_72336983_72337084_72337797_72337895_72337974_72338045_72338811_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
709	chr17	-	4309	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	16	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	1323	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTGCTTGGTTCCACA	NA	False	NA	NA	False	NA	NA	NA	28841441	28806629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808417_28808510_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
710	chr15	-	4751	15	NIC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	-10	1	intron_retention	FALSE	canonical	3	1416	junction_7	94.5166004207834	11	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96953847	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
711	chrX	+	3457	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	27	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	925.235326606156	2	37	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529163	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538759_20539064_20539144_20541863_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
712	chr10	-	5796	15	Antisense	novelGene_ENSMUSG00000037608.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	256	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGCGGCCTCGTCGCGCT	NA	False	NA	NA	False	NA	NA	NA	20218239	20188257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20188349_20193751_20193856_20197746_20197861_20198706_20199613_20200883_20201550_20201673_20201843_20202906_20203136_20203845_20203952_20205050_20205139_20207829_20208006_20208139_20208304_20209137_20209319_20210244_20210391_20215453_20215666_20215795
714	chr12	+	2021	15	FSM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	5	738	1	686	multi-exon	FALSE	canonical	3	294	junction_7	23.9123612470237	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGCTTACCTGTTATAGT	NA	False	NA	NA	False	NA	NA	NA	85157611	85180124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
715	chr5	+	4326	17	NIC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	6	-10	intron_retention	FALSE	canonical	0	0	junction_5	742.101902958751	2	95	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTAAAAGAGCTAATGA	NA	False	NA	NA	False	NA	NA	NA	108213588	108256860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108221172_108221321_108226731_108226841_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
716	chr4	-	3529	17	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	12	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	453.337208929512	7	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGCCACTCACATTTA	NA	False	NA	NA	False	NA	NA	NA	135080501	135047798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051373_135052129_135052546_135054441_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
717	chr11	-	6437	22	NIC	ENSMUSG00000017146.13	novel	6572	23	NA	NA	56	10	intron_retention	FALSE	canonical	2	2	junction_18	77.5319113585597	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGACTGATTGGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	101442649	101379579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101426353_101426432_101430806_101430861_101439840_101439940_101442594
718	chr8	-	4852	24	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-5	-253	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	255.65799313105	3	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTGTGTAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	111573413	111537123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547429_111551099_111552290_111552726_111552879_111556150_111556180_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
719	chr19	+	3203	21	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	39	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	746.938181846396	1	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCTTATTGGTCTCTG	705	False	NA	NA	False	NA	NA	NA	10583025	10607182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583071_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
720	chr12	+	5070	2	Intergenic	novelGene_4386	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	178	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTGGACCAGAGATTATT	NA	False	NA	NA	False	NA	NA	NA	68605042	68610180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605477_68605544
721	chr14	-	3637	26	Antisense	novelGene_ENSMUSG00000030662.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGGAGGGAGCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	121184537	121148647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_121148754_121154765_121154847_121157332_121157525_121159534_121159640_121160450_121160548_121160891_121160996_121163610_121163734_121163822_121163946_121165869_121165955_121166709_121166820_121170253_121170381_121170462_121170551_121170639_121170814_121172438_121172660_121173833_121173911_121175969_121176110_121176184_121176308_121176869_121176969_121178233_121178405_121179041_121179154_121179239_121179296_121180058_121180184_121181091_121181311_121181743_121181972_121183486_121183629_121184128
722	chr13	+	5971	18	FSM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	16	10	0	-7	multi-exon	FALSE	canonical	3	632	junction_5	80.8182205637225	664	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACATTTTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	44884762	45075109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
723	chr4	+	3030	13	NIC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	8	1394	intron_retention	FALSE	canonical	3	246	junction_9	30.34340492137	40	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTCAGATGTTTATT	NA	False	NA	NA	False	NA	NA	NA	62327041	62342962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340959_62341454
725	chr11	-	4021	8	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-686	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	496.533082524031	7	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACATTTTGCTGCTTCGTT	NA	False	NA	NA	False	NA	NA	NA	97056912	97050543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97052228_97052272_97052501_97052636_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201
726	chrX	-	7404	5	FSM	ENSMUSG00000056537.12	ENSMUST00000070705.6	7429	5	15	10	15	-10	multi-exon	FALSE	canonical	3	128	junction_4	35.6300435026397	260	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTGATCATTTGTGCTT	2388	False	NA	NA	False	NA	NA	NA	103024875	103000778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024678
727	chr4	+	3248	9	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	120.691756139349	492	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533648	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147578832_147578931_147579742_147579813_147591995_147592098_147595209_147595337_147596801_147597378_147597546_147598217_147599053
728	chr13	+	4222	35	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	11	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_34	369.779748341816	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835616	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134_49887264_49887419
731	chr5	-	6799	4	FSM	ENSMUSG00000046572.11	ENSMUST00000057258.11	6804	4	5	0	5	0	multi-exon	FALSE	canonical	3	45	junction_3	106.871677986057	175	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGCTCTCTCATTTCG	NA	False	NA	NA	False	NA	NA	NA	38842088	38825828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_38832197_38839827_38840126_38840535_38840602_38842021
732	chr16	-	4715	32	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8928	-3	at_least_one_novel_splicesite	FALSE	canonical	2	100	junction_31	169.206103657901	127	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCGATGACTGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	8601244	8507466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8601193
733	chr16	-	5189	32	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	-33	-9	at_least_one_novel_splicesite	FALSE	canonical	2	31	junction_23	193.920658115944	770	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATAATCCGATGACTG	NA	False	NA	NA	False	NA	NA	NA	8610205	8507472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523474_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
734	chr8	-	6166	14	FSM	ENSMUSG00000031523.17	ENSMUST00000033923.14	6159	14	0	-7	0	7	multi-exon	TRUE	canonical	3	9	junction_4	11.0077971289962	495	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATTGAATTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	37081097	37034897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_37037558_37038418_37038593_37039821_37040040_37041108_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
736	chr17	+	5725	13	NIC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	5	-3	intron_retention	FALSE	canonical	3	1624	junction_8	118.435519259309	16	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4945	False	NA	NA	False	NA	NA	NA	87980041	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88028487_88030758
737	chr16	-	1310	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	-32	8	-23	-7	multi-exon	FALSE	canonical	3	674	junction_8	39.9499687108764	2962	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAATATATTTTGATGTT	NA	False	NA	NA	False	NA	NA	NA	56987727	56977035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
738	chr11	+	4032	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-10	-240	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	555.551234720975	3	85	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAACAATCCATGATGC	NA	False	NA	NA	False	NA	NA	NA	72332170	72342354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337837_72338012_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
739	chr14	-	4497	26	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	176	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	236.959831195078	282	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGTTTTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	52434697	52397896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418652_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
740	chr1	-	3474	13	Antisense	novelGene_ENSMUSG00000051223.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCGGAACTAACGCGAGCA	NA	False	NA	NA	False	NA	NA	NA	58446476	58432304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_58432375_58433359_58433433_58436832_58437011_58438161_58438252_58439232_58439302_58439863_58440000_58440270_58440382_58440498_58440671_58442045_58442190_58442770_58442911_58443388_58443513_58444192_58444364_58444480
741	chr7	+	4940	3	ISM	ENSMUSG00000072244.12	ENSMUST00000214578.2	1506	8	3197	-1906	3197	-248	intron_retention	FALSE	canonical	3	657	junction_2	11.5	1	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	6961	False	NA	NA	False	NA	NA	NA	103877910	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_103879958_103880995_103881097_103881319
742	chr3	-	1873	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30616	-2421	multi-exon	FALSE	non_canonical	0	0	junction_1	0	342	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCCCGAACGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	121251839	121220305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_121220476_121243595_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
743	chr3	+	3776	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	163	379	-18	3	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCCTGTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	102927904	102965123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
745	chr4	+	5668	6	NIC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-3	-22	intron_retention	FALSE	canonical	3	381	junction_2	439.264567202956	18	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACAAAATGAAGGA	4683	False	NA	NA	False	NA	NA	NA	135583419	135593104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_135583603_135585615_135585783_135586152_135589189_135590350_135590514_135590833_135590888_135591039
746	chr11	-	4331	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	89	6	-42	-1	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	2211	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGCGTGATGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	100418737	100367184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
747	chr6	-	5185	14	NNC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	-561	-90	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_13	29.6943004512641	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATCCTTCTTGTTTATG	9763	False	NA	NA	False	NA	NA	NA	38332099	38282310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849_38331470_38332029
748	chr11	-	3559	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1169.03004666262	2459	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675199_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
749	chr15	-	4844	14	NIC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	9	1	intron_retention	FALSE	canonical	3	1492	junction_5	84.7707664247333	8	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTATGATCTTCTTTCGTG	NA	False	NA	NA	False	NA	NA	NA	96953828	96892699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
750	chrX	+	3218	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	2	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	1031.28145659094	72	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524661	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20525438_20525536_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547663_20548673
753	chr5	+	3918	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-219	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	835.367815848266	2	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTAATTTTAACTGAAC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108247426_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
754	chr19	+	3914	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	259	286	-1	199	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATGTAGGTTGTGGGTG	629	False	NA	NA	False	NA	NA	NA	10582949	10606897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
755	chr5	-	4135	11	NNC	ENSMUSG00000029405.17	novel	4232	11	NA	NA	-53972	4	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_10	509.365772309055	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTATGTCCCTAATTT	NA	False	NA	NA	False	NA	NA	NA	92285550	92200018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92285410
756	chrX	+	3270	24	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	34	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	672.526298317149	109	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529170	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547733_20548686
758	chr13	-	5260	14	NIC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	6	-83	intron_retention	FALSE	canonical	3	1480	junction_6	179.160633355597	65	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGTTCTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	74498348	74470933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74471293_74471959_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
760	chr17	-	4758	16	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-31	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	190.043316699699	1218	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCTTGGTTCCACAAG	NA	False	NA	NA	False	NA	NA	NA	28841492	28806627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808310_28808380_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
762	chr6	-	2662	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	2	33	2	-11	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	69	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAATAAAAGTTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	148847963	148822565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
763	chr6	-	6447	9	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-526	-6	intron_retention	FALSE	canonical	3	6241	junction_5	677.308263920499	13	163	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAATTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51447400	51438109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164
764	chr19	+	4802	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-215	-5	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	1073.59396421552	2	121	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	852	False	NA	NA	False	NA	NA	NA	44281897	44295298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44281988_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
765	chrX	-	3452	11	ISM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	954	23	896	-23	3prime_fragment	FALSE	canonical	3	1008	junction_2	67.5585671843327	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAGATTCTGAAACAA	NA	False	NA	NA	False	NA	NA	NA	93255361	93232335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324
767	chr8	-	4400	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	2	-472	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	178.034585404073	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTATTCCCAAAGCCACC	NA	False	NA	NA	False	NA	NA	NA	111573417	111537342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111572968
768	chrX	+	6080	15	NIC	ENSMUSG00000025246.14	novel	5234	16	NA	NA	97	-9	intron_retention	FALSE	canonical	3	377	junction_1	41.6347701042368	7	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATATTAGAGAACATAGT	NA	False	NA	NA	False	NA	NA	NA	76554715	76706580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
770	chr3	+	4113	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	-69	-195	-69	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	1212	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	NA	False	NA	NA	NA	102927853	102965502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
771	chrUn_JH584304v1	-	3695	8	Intergenic	novelGene_4620	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_7	326.913643967707	8	48	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAATGGCCAACAATCT	NA	False	NA	NA	False	NA	NA	NA	61455	52200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_56985_57152_57410_58836_59591_59774_61381
772	chr11	-	4097	27	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	1046.55136678216	2	37	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405920_100406733_100406847_100407601_100407733_100409914_100409995_100410440_100410541_100412807_100412931_100414265_100414448_100418620
774	chr6	-	4161	9	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	8	intron_retention	TRUE	non_canonical	0	0	junction_2	2355.1775642985	2	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTTGTATCCAAATTAC	NA	False	NA	NA	False	NA	NA	NA	51446874	51438116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440465_51441128_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
775	chr1	-	4403	26	NIC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-3	-1847	combination_of_known_junctions	FALSE	canonical	2	24	junction_22	403.867602067806	1173	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGTTTTTTGAATATG	NA	False	NA	NA	False	NA	NA	NA	55066643	55026178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55054027_55054084_55055534_55055650_55055937_55056043_55058392_55058560_55066497
776	chr11	+	4119	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	18	221	-4	-221	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	1	81	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332198	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
777	chr4	+	2539	5	Fusion	ENSMUSG00000082248.2_ENSMUSG00000078496.10	novel	1244	3	NA	NA	-94	1724	multi-exon	TRUE	canonical	0	0	junction_4	143.695859369712	3	34	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTCAGAGAAAACATCTAAG	NA	False	NA	NA	False	NA	NA	NA	147527833	147599667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147527997_147592042_147592098_147595209_147595337_147596801_147597411_147598082
778	chr18	-	499	1	NIC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	12451	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTTTGGGCCATGTTAT	NA	False	NA	NA	False	NA	NA	NA	42335915	42335416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_42335400_42335900
779	chr4	-	3350	5	ISM	ENSMUSG00000028809.17	ENSMUST00000084846.12	3740	18	24631	4	-1390	-4	3prime_fragment	FALSE	canonical	3	940	junction_4	137.940884077202	156	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAGAACATTGCCACTC	NA	False	NA	NA	False	NA	NA	NA	135055924	135047805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402
781	chr19	-	4239	27	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24168	-6517	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	90	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACGGGACGGCCTCACC	NA	False	NA	NA	False	NA	NA	NA	10607186	10582912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600811_10600905_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849_10605022_10605125_10605229_10605788_10605910_10606441
782	chr17	+	2250	17	Antisense	novelGene_ENSMUSG00000099123.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	31	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGGAGCGCCTCACGCAG	NA	False	NA	NA	False	NA	NA	NA	24443029	24470346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24443317_24443875_24444051_24445447_24445579_24445659_24445758_24449289_24449378_24450284_24450466_24450758_24450881_24453341_24453505_24456047_24456207_24458820_24458899_24459752_24459857_24460360_24460412_24461106_24461302_24462245_24462318_24463447_24463559_24468222_24468380_24470268
784	chrX	+	4571	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	25	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	179.101998988472	161	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCCTCTAGCTTCAATTG	NA	False	NA	NA	False	NA	NA	NA	150799448	150845687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806076_150809253_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
785	chrX	-	3249	24	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	18	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGCGGCAGAGCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	20548879	20529169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20529290_20535091_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
786	chr5	-	4176	12	NNC	ENSMUSG00000029405.17	novel	2716	12	NA	NA	45	3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	674.085018057995	24	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATCTATGTCCCTAATT	NA	False	NA	NA	False	NA	NA	NA	92231327	92200019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204178_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
787	chr8	+	4045	17	NNC	ENSMUSG00000000303.13	novel	3203	17	NA	NA	-12	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	328.167425828646	12	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGAGGCTCACTTG	5065	False	NA	NA	False	NA	NA	NA	107329998	107396873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392108_107392818_107392963_107395037_107395514_107395828
788	chr13	+	4289	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	20	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	375.323627724138	303	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATACTGTGTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	49835625	49887734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875666_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
791	chrX	+	3810	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-721	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	183.268658099705	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAATCTAAATTTGATTC	NA	False	NA	NA	False	NA	NA	NA	150799471	150844969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811072_150811966_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
792	chr11	-	6764	30	NNC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	-4003	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_28	116.78926008968	517	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTTTTCCGATGGCCT	NA	False	NA	NA	False	NA	NA	NA	68903289	68876522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228_68899524_68900173_68900275_68903236
793	chr15	-	1234	8	NNC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	387.014844412871	5767	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845061	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840558_81840640_81841993_81842112_81844915
794	chr2	-	2276	11	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	-10	-2	intron_retention	FALSE	canonical	3	250	junction_8	28.3577149996258	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTCTAGTAGGATCCA	9053	False	NA	NA	False	NA	NA	NA	25246319	25242303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25243529_25243619_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
795	chr11	+	2084	15	Antisense	novelGene_ENSMUSG00000020929.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCACCTGTGCACATAGAA	NA	False	NA	NA	False	NA	NA	NA	102729307	102742712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102729725_102729977_102730084_102730245_102730399_102730848_102730947_102731090_102731209_102731995_102732078_102732220_102732354_102732507_102732594_102734174_102734257_102734963_102735066_102736919_102737062_102737409_102737519_102738779_102738977_102740008_102740137_102742581
796	chr11	-	3343	12	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1634.06207839025	106	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9654	False	NA	NA	False	NA	NA	NA	106679320	106671180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676878_106676959_106677331_106677371_106677734_106677901_106679098
797	chr6	-	3300	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	9	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705283_122705698_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
799	chr18	+	5004	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26827	1910	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	341.46650267483	20	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6258	False	NA	NA	False	NA	NA	NA	77126076	77243406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
800	chr15	-	3987	17	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	18	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	536.217944117641	683	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCTTCTTTCGTGAGTT	NA	False	NA	NA	False	NA	NA	NA	96953819	96892695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96895814_96895880_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
801	chr4	+	3291	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-33	2581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.762366220348	1082	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576840	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147597216_147597970_147598935_147599102
802	SIRV6001	+	6000	1	FSM	SIRV6001A	SIRV6001	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	446	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6001_+_0_6000
804	chr6	-	3298	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	6	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705697_122706116_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
805	chr13	-	4416	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	14	-5	14	5	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	781	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAAGCAGTGGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	96807430	96785469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
806	chr16	+	6040	17	NNC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	0	-4	intron_retention	FALSE	canonical	0	0	junction_2	108.535996333014	12	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGACTTGTCGGACTC	8020	False	NA	NA	False	NA	NA	NA	32427800	32451604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32427855_32431985_32432050_32433383_32433586_32434010_32434213_32435566_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
807	chr8	-	6085	13	NNC	ENSMUSG00000033658.17	novel	3104	12	NA	NA	25	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.240162943315	149	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	111758358	111729821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731178_111731640_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
808	chr13	+	4270	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-23	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	370.60883816695	400	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTGGAAGTAGTTATT	NA	False	NA	NA	False	NA	NA	NA	49835643	49887740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880759_49882198_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
809	chrX	+	3288	24	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-4	-477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	748.039135476319	8	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTAGCCATCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	20524560	20548941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547758_20548700
812	chrX	-	4714	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	146	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800322	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
813	chr4	-	2442	11	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-31923	63754	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	97.4372105512058	3	59	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025970	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146912735_146912900_146913157_146913745_146913948_146914367_146914452_146976159_146976629_146976961_146977116_146978205_146978333_146982168_146982279_147021745_147022236_147022273_147022389_147025871
814	chr17	+	5100	32	NNC	ENSMUSG00000067150.7	novel	5081	32	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	77.9414252168146	610	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGCCCTATTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	46513690	46554524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546927_46547835_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
815	chrX	+	3967	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	-5	729	-5	-729	multi-exon	TRUE	canonical	3	535	junction_3	101.202320735358	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799418	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
816	chr18	-	4017	12	NIC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	-5	0	intron_retention	FALSE	canonical	3	3478	junction_11	577.123173182981	58	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649604	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634947_64636578_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
817	chr11	+	6073	15	NIC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	0	1109	intron_retention	FALSE	canonical	3	694	junction_10	84.5140973628733	6	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGTGAGATACTGTGT	NA	False	NA	NA	False	NA	NA	NA	4110354	4130528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
818	chr4	+	5729	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	555	junction_19	264.570952206992	813	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTTTATCCGGAGTGAG	563	False	NA	NA	False	NA	NA	NA	137321510	137385839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
819	chrX	-	2735	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-4	-22	intron_retention	FALSE	non_canonical	0	0	junction_1	415.306080494697	36	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGATTCAGCTACTTT	NA	False	NA	NA	False	NA	NA	NA	158921356	158905226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906427_158906464_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
820	chr11	+	5517	10	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	27	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	180.202012841419	485	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	88890228	88911119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020_88910662_88910707
822	chr9	-	5203	29	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.556730616718567	1	194	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGGCGGGACCCGCTCT	6404	False	NA	NA	False	NA	NA	NA	72656911	72569692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569895_72577232_72577403_72578517_72578584_72584594_72584674_72584772_72584813_72593341_72593395_72616391_72616444_72617758_72617820_72619446_72619547_72625497_72625663_72628571_72628696_72628774_72628944_72632298_72632360_72633688_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644233_72646336_72646420_72646738_72646811_72647449_72647504_72648908_72648964_72649924_72650041_72650819_72650917_72653686_72653759_72654404
824	chr1	+	4744	12	NIC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	26	0	intron_retention	FALSE	canonical	3	766	junction_1	76.2177177293296	10	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406740	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
825	chr14	+	3770	25	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	387.2184438581	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	1842	False	NA	NA	False	NA	NA	NA	121148646	121184828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179112_121179156_121179245_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
826	chr7	+	4134	24	NIC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	20	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	242.413307638477	27	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCTTGATCTGATTGC	7218	False	NA	NA	False	NA	NA	NA	109617500	109655324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109654223
828	chr13	+	4657	34	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	53	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	455.088493801022	2	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATACTGTGTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	49835719	49887734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49836121_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873139_49874606_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
829	chr18	-	4654	26	FSM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	-59	0	-17	0	multi-exon	FALSE	canonical	2	549	junction_9	234.649375878139	1402	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60982060	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
830	chr8	-	5070	25	NIC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-5	21	intron_retention	FALSE	canonical	3	597	junction_22	103.296095440889	118	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGAATGTTATATTTGG	NA	False	NA	NA	False	NA	NA	NA	111573413	111536849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111568576_111569319_111569647_111571094_111571232_111573306
833	chr17	-	4775	15	NNC	ENSMUSG00000004865.17	novel	4804	15	NA	NA	-7	-4	intron_retention	FALSE	canonical	0	0	junction_3	254.505122036585	6	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTTGGTTCCACAAGTT	NA	False	NA	NA	False	NA	NA	NA	28841013	28806625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28809216_28810174_28810268_28811191_28811262_28812872_28812934_28813143_28813252_28817875_28817977_28818444_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950
836	chr4	+	3079	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	129.658097403217	341	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533648	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147591995_147592098_147595209_147595337_147596801_147597189_147598027_147598853_147599020
837	chr18	+	8080	46	FSM	ENSMUSG00000024542.10	ENSMUST00000025425.7	8093	46	13	0	7	0	multi-exon	FALSE	canonical	3	91	junction_4	30.2980747463157	244	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTTTTTGTATTTTA	120	False	NA	NA	False	NA	NA	NA	67933189	68018241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943146_67943200_67945396_67945518_67946942_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962903_67963035_67967566_67968390_67968479_67968595_67970987_67971157_67974054_67974932_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013821_68013949_68014354_68014414_68017809
839	SIRV2	-	1972	11	FSM	SIRV2A	SIRV202	1971	11	0	-1	0	1	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	7243	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCTCTATAGCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	5911	1034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
840	chr5	+	3756	20	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-101	intron_retention	FALSE	canonical	1	1	junction_3	797.718710620629	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCAGTGTTAGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	108208603	108256034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108215325_108215439_108217027_108217230_108220436_108220522_108221172_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
841	chrX	-	4340	23	Intergenic	novelGene_4083	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	187	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGGAAATAGCGCAGTGCA	NA	False	NA	NA	False	NA	NA	NA	150845686	150799468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150799634_150809230_150809436_150809525_150809767_150810689_150810947_150811034_150811176_150811958_150812044_150812186_150812394_150816693_150816879_150816973_150817154_150819095_150819245_150819336_150819473_150820363_150820480_150820583_150820693_150824321_150824462_150829652_150829802_150829890_150830045_150830853_150830963_150841772_150841931_150842352_150842507_150842621_150842774_150843969_150844040_150844286_150844398_150844719
843	chr4	+	5389	17	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.242061459137964	2	70	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCGCGCCGCCGCGACGG	NA	False	NA	NA	False	NA	NA	NA	135047799	135080467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051373_135052129_135052589_135054399_135054566_135056681_135056831_135059034_135059122_135059471_135059550_135065114_135065392_135067814_135067934_135068157_135068349_135069682_135069885_135071174_135071291_135071809_135073756_135074044_135074172_135074427_135074515_135080406
844	chr3	+	4187	20	FSM	ENSMUSG00000068823.11	ENSMUST00000199420.5	4185	20	-2	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_12	5440.27575987562	45	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	NA	False	NA	NA	NA	102927926	102965502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102943890_102944038_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
845	chr14	-	4367	26	Antisense	novelGene_ENSMUSG00000030662.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	62	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGGGTTGGGGGCGGGCC	NA	False	NA	NA	False	NA	NA	NA	121185411	121148609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_121148754_121154765_121154847_121157332_121157525_121159534_121159640_121160450_121160548_121160891_121160996_121163610_121163734_121163822_121163946_121165869_121165955_121166709_121166820_121170253_121170381_121170462_121170551_121170639_121170814_121172438_121172660_121173833_121173911_121175969_121176110_121176184_121176308_121176869_121176969_121178233_121178405_121179041_121179154_121179239_121179296_121180058_121180184_121181091_121181186_121181800_121181972_121183486_121183629_121184128
846	chr18	+	3787	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	56	2419	-3	-3	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	66	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35695266	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
847	chr6	+	6104	34	FSM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	-3	3115	-3	-3115	multi-exon	FALSE	canonical	3	275	junction_3	38.128991835157	425	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGACTTAAGTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	71886041	71956344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949809_71951084_71951196_71951727_71952004_71953002_71953204_71954317_71954436_71954927_71955093_71955398
848	chr18	-	3729	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	4	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	460.189607124849	10	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTTTTTTCACCTTTG	NA	False	NA	NA	False	NA	NA	NA	42395179	42335427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42349953_42350563_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
849	chr17	+	4173	11	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	805.485046416133	9	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAATGACCATTTTTC	NA	False	NA	NA	False	NA	NA	NA	88282489	88298309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88293224_88293290_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
850	chr4	+	2611	10	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	116.775927673261	25	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576855	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147597327_147597411_147597630_147597965_147598133_147598801_147599093_147599343_147599634_147599877
851	chr8	-	6364	10	NNC	ENSMUSG00000033658.17	novel	6612	12	NA	NA	5346	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	113.033699771133	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGTATTTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	111749050	111729819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742192_111742300_111747260_111747354_111747591_111747728_111749032
854	chr13	+	1353	4	Intergenic	novelGene_1511	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_2	3.2659863237109	19	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGAGCCAAAATAAACCTT	NA	False	NA	NA	False	NA	NA	NA	97635807	97641334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_97635936_97636752_97636894_97638796_97638947_97640400
855	chr2	-	4373	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	-58	-2739	-40	2739	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	2	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGTGATGAACAGTAAG	NA	False	NA	NA	False	NA	NA	NA	177482169	177470844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
856	chr11	-	3333	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-137	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_2	1149.91111975375	8	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTAAATAATTATGGAAAT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673469_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
857	chr17	+	4996	32	NNC	ENSMUSG00000067150.7	novel	5081	32	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	94.3624094012679	13	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGCCCTATTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	46513744	46554524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546927_46547835_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552392_46552481_46552651_46552817_46553059
858	chr6	-	4663	33	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	158.900909448113	348	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3465	False	NA	NA	False	NA	NA	NA	125168594	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125152140_125152245_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
859	chr1	+	3879	24	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	454.418850283946	9	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3096	False	NA	NA	False	NA	NA	NA	180396442	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014_180428479_180428523
861	chr9	-	4808	12	NNC	ENSMUSG00000032423.13	novel	9450	12	NA	NA	-10	-1275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	338.289889867813	4	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTATTTTTGAAAGATAC	NA	False	NA	NA	False	NA	NA	NA	88364259	88333058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88335505_88335636_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88364108
862	chr18	-	3810	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	459.509159924055	84	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGCCATGTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	42395181	42335411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344311_42345602_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
863	chr19	-	5191	26	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	-42	-12	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_24	212.273385990802	674	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGAACTCGGTCTGCGCT	NA	False	NA	NA	False	NA	NA	NA	37340052	37246153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37321323_37321426_37339912
864	chr5	-	3509	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	11	0	9	0	multi-exon	FALSE	canonical	3	925	junction_1	0	1273	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963442	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
865	chrX	+	3171	24	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	13	480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	815.105267651668	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAGGATAATTACCCAG	NA	False	NA	NA	False	NA	NA	NA	20524672	20548924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535451_20537001_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
866	chr14	-	5288	21	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11268	60497	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1272	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCGGATAAAGAATCAAAG	NA	False	NA	NA	False	NA	NA	NA	19861855	19800921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19801634_19802308_19802616_19813731_19813967_19818277_19819004_19828061_19828212_19828803_19829049_19829601_19829804_19831200_19831431_19839734_19839882_19840344_19840475_19841575_19841717_19847228_19847349_19848461_19848712_19852403_19852630_19853118_19853287_19855365_19855493_19855907_19856081_19857992_19858151_19860045_19860170_19861019_19861133_19861251
867	chr9	+	4624	17	NIC	ENSMUSG00000032479.16	novel	5573	19	NA	NA	26	-3	combination_of_known_junctions	FALSE	canonical	3	75	junction_13	87.976204169082	23	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAAGTTTGTATTGAAAT	NA	False	NA	NA	False	NA	NA	NA	109760893	109912235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070_109907153_109908848_109908962_109910488_109910679_109910908
868	chr11	+	4319	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-3	-218	intron_retention	FALSE	canonical	3	2354	junction_11	204.801186621725	1	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332199	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
869	chrX	+	3135	24	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	2	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	811.580231763805	4	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20524661	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542244_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
870	chr10	-	4716	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	-5	11	-5	-11	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	94	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTTATATTTAGTTCT	NA	False	NA	NA	False	NA	NA	NA	62438065	62416040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
873	chr10	+	2169	1	Intergenic	novelGene_3537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCCTCTTGCAGTTTGC	NA	False	NA	NA	False	NA	NA	NA	117583595	117585764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_117583600_117585800
874	chr4	+	3161	7	Intergenic	novelGene_2092	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	170.683918398893	3	53	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146426563	146806011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426715_146428065_146428160_146797295_146797381_146800390_146800518_146802050_146803875_146804293_146804650_146805487
875	chr14	+	4423	21	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	365.846402196331	6	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGTGGTCTAAATATCTA	NA	False	NA	NA	False	NA	NA	NA	19801351	19861854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801411_19802518_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
876	chrX	+	3329	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	2	478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	757.59821963888	117	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAAAGGATAATTACCC	NA	False	NA	NA	False	NA	NA	NA	20524661	20548922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548453_20548742
878	chr4	+	3492	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10	novel	2813	7	NA	NA	4	2581	multi-exon	TRUE	non_canonical	0	0	junction_1	122.611110324473	1	76	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216498	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447362_147541451_147541542_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597327_147597998_147599216_147599382
879	chr13	+	5648	19	NIC	ENSMUSG00000038518.16	novel	5997	18	NA	NA	-115	-2	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	184.132198886199	19	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTCTGTCTTGTGGG	8790	False	NA	NA	False	NA	NA	NA	44883155	45075114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_44883254_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
881	chr16	+	4034	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1361.98577452189	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACAACTCATTTATGGT	NA	False	NA	NA	False	NA	NA	NA	84571280	84622808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613204_84618131_84618191_84619674
882	chr8	+	4370	19	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	7	-2094	intron_retention	FALSE	non_canonical	0	0	junction_17	809.757632158849	19	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGATGTCATGCGCTCT	NA	False	NA	NA	False	NA	NA	NA	111760517	111782202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111780849_111781147_111781255_111781650
883	chr2	-	2796	5	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-5	1415	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	266.044521650043	17	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTGGAAGGACTTTGGA	NA	False	NA	NA	False	NA	NA	NA	177482116	177472168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177472392_177472591_177474890_177476043_177476105_177476312_177476440_177482029
886	chr3	+	5746	23	FSM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	124	-2088	124	2088	multi-exon	FALSE	canonical	3	117	junction_1	72.8286793023574	546	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTTGTGCTTTGCAT	NA	False	NA	NA	False	NA	NA	NA	63203639	63291132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
887	chr5	+	3739	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	813.080190113838	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAATTTTAACTGAACA	NA	False	NA	NA	False	NA	NA	NA	108208603	108256652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208734_108228775_108228888_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
888	chr18	-	4556	26	NNC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	376.457054124372	75	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60982005	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952641_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961903_60962081_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
889	chr5	+	4017	6	NIC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	14	-1	intron_retention	FALSE	canonical	3	1984	junction_3	135.88141889162	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTGAACTAAGTATCTT	NA	False	NA	NA	False	NA	NA	NA	34493803	34510767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34507416_34508133_34508183_34508574
891	chr19	-	4256	23	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	-12	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	379.321700512031	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAGTGTTTTGTCAATG	8727	False	NA	NA	False	NA	NA	NA	60779108	60749555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60749728_60750622_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
892	chr9	+	5427	5	FSM	ENSMUSG00000057982.9	ENSMUST00000213371.2	1766	5	-5	-3656	4	-5	multi-exon	FALSE	canonical	3	33	junction_2	49.3273504254992	620	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAAGTTGCCTTGGTTGTG	744	False	NA	NA	False	NA	NA	NA	22137013	22154645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837
893	chr1	-	4519	29	NNC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_27	144.38230059287	625	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	93406533	93335483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369462_93369563_93369907_93369973_93406434
894	chr9	-	6998	48	FSM	ENSMUSG00000049313.9	ENSMUST00000060989.9	10715	48	180	3537	180	1482	multi-exon	FALSE	canonical	3	333	junction_27	73.2507244219374	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGAGAGAGTAATGGACG	NA	False	NA	NA	False	NA	NA	NA	42035413	41879552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_41879967_41880939_41881153_41885232_41885426_41887653_41887761_41888731_41888907_41890625_41890791_41891921_41892042_41894201_41894387_41895731_41895832_41896853_41896937_41898761_41898835_41900000_41900106_41900649_41900763_41902607_41902778_41902914_41903042_41903599_41903732_41907466_41907617_41911539_41911696_41912766_41912902_41913849_41913982_41915281_41915414_41917101_41917210_41919474_41919601_41925750_41925871_41929411_41929535_41933631_41933746_41935591_41935766_41942174_41942314_41942964_41943212_41944860_41944953_41946738_41946871_41948344_41948518_41952288_41952375_41952859_41952989_41955202_41955390_41957778_41957958_41968566_41968656_41975010_41975085_41975282_41975401_41979092_41979286_41982367_41982538_41983540_41983643_41993083_41993265_42001240_42001309_42003604_42003767_42010440_42010567_42017723_42017841_42035124
895	chr11	-	7477	31	FSM	ENSMUSG00000020422.15	ENSMUST00000020695.13	7483	31	-3	9	-3	-9	multi-exon	TRUE	canonical	3	26	junction_30	11.9341247409826	241	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCTAATGAAGCATTTT	9658	False	NA	NA	False	NA	NA	NA	8614538	8381660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8614478
896	chr11	+	3423	2	Antisense	novelGene_ENSMUSG00000035455.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGGCTGCCCTGGAACT	6255	False	NA	NA	False	NA	NA	NA	11750383	11756838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_11753064_11756095
899	chr10	+	5196	14	Antisense	novelGene_ENSMUSG00002076247.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTCCCCCTTCCGCCGCC	1326	False	NA	NA	False	NA	NA	NA	60934419	60983412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_60936787_60937458_60937581_60938346_60938494_60938899_60940392_60941200_60941299_60942042_60942150_60943355_60943440_60947935_60948069_60949215_60949294_60949788_60949937_60953473_60953540_60959085_60959258_60982039_60982111_60983301
900	chr13	+	2496	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	5	389	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAGAGAAACTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	62277751	62321622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62315185_62315289_62317255_62317323_62319128_62320109_62320275_62320925_62321016
901	chr10	-	2287	7	Antisense	novelGene_ENSMUSG00000005683.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGGGTTCTTCTCCACCC	NA	False	NA	NA	False	NA	NA	NA	128198239	128188621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128188673_128188889_128189079_128194200_128194401_128195036_128195167_128195300_128195403_128195810_128196021_128196834
903	chr13	+	4210	33	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	28	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_31	374.053512580002	2	57	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCTCTTAGATACTGTGT	NA	False	NA	NA	False	NA	NA	NA	49840896	49887726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885003_49885840_49885969_49887134
904	chr19	-	5762	25	FSM	ENSMUSG00000024943.10	ENSMUST00000087556.7	5683	25	-81	2	-2	-2	multi-exon	FALSE	canonical	2	93	junction_7	95.2415696910872	376	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGTTATTTAAGATGAGAG	NA	False	NA	NA	False	NA	NA	NA	23251263	23183816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192008_23192105_23192518_23192564_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
905	chr2	+	4416	18	NIC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	39	-9	combination_of_known_splicesites	FALSE	canonical	1	3	junction_6	194.122138985461	26	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTTTATCACATTCCAA	7271	False	NA	NA	False	NA	NA	NA	23046578	23089263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
906	chr6	-	4221	8	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-1	1	intron_retention	FALSE	canonical	3	5712	junction_7	809.202555303803	8	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGGTGTAATGCTTACA	NA	False	NA	NA	False	NA	NA	NA	51446828	51438099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440474_51441068_51441192_51441407_51442222_51443121_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
908	chr5	+	3216	11	ISM	ENSMUSG00000029267.18	ENSMUST00000198662.5	2675	16	9171	-1331	340	-203	3prime_fragment	FALSE	canonical	3	1473	junction_2	141.852599553198	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACACCAGCAGTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	108235201	108256667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
909	chr5	-	4141	11	NNC	ENSMUSG00000029405.17	novel	4232	11	NA	NA	-54036	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	669.406460978679	4	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTTATCTATGTCCCT	NA	False	NA	NA	False	NA	NA	NA	92285614	92200023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202860_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92285410
910	chr5	+	3617	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-216	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	818.728057814719	1	52	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208601	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
911	chr13	-	6773	45	Intergenic	novelGene_1315	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	372	20	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTCTAAAGCACGCCTC	7789	False	NA	NA	False	NA	NA	NA	12453778	12410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_12410351_12410619_12410804_12411304_12411524_12413785_12413924_12415928_12416031_12416328_12416470_12417592_12417807_12418025_12418158_12419766_12419868_12420900_12421015_12421405_12421522_12422395_12422504_12423532_12423629_12424087_12424182_12425279_12425487_12426098_12426220_12426919_12427117_12428104_12428284_12428387_12428534_12429257_12429445_12430295_12430466_12430829_12430989_12432338_12432582_12432976_12433110_12435921_12436027_12436158_12436301_12436919_12437035_12437116_12437243_12438513_12438641_12439497_12439730_12441032_12441160_12441640_12441802_12444645_12444694_12445020_12445144_12445789_12445932_12446559_12446850_12447505_12447658_12448489_12448647_12448792_12448938_12449070_12449171_12449252_12449422_12449925_12450080_12450547_12450708_12452712_12452822_12453467
912	chr17	+	3971	11	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	805.485046416133	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	88282518	88298320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88292090_88292340_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
913	chr16	-	3873	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	26	-126	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	950	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACAGGGAAAGGGGAA	NA	False	NA	NA	False	NA	NA	NA	16176776	16130235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
914	chr9	+	5812	32	NIC	ENSMUSG00000037286.16	novel	6186	34	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	78.9085536143374	17	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTGGTTATCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	100525668	100840597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_100525850_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
916	SIRV6003	+	5869	2	Genic_Genomic	SIRV6003A	novel	6000	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV6003_+_5349_5479
917	chr5	+	3404	11	NNC	ENSMUSG00000029267.18	novel	582	7	NA	NA	-4940	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	657.686216975846	4	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208599	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221238_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
918	chr6	-	4455	8	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-2	intron_retention	TRUE	canonical	0	0	junction_6	3149.28493989557	11	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATTACTTGGTGTAATG	NA	False	NA	NA	False	NA	NA	NA	51446825	51438105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440474_51441068_51442222_51443121_51443385_51443474_51443686_51443885_51444033_51444164_51444267_51444370_51444407_51446650
919	chr3	+	950	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	38	238	8	-228	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	2028	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	NA	False	NA	NA	NA	87826850	87830741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
920	chr11	-	3966	27	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	957.290781598018	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTAACAATGGCGTGATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395700_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
921	chr7	-	6588	33	NIC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	15	-10	combination_of_known_junctions	FALSE	canonical	3	26	junction_32	42.9167867615634	5	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTATTCCTGGTGGTA	9994	False	NA	NA	False	NA	NA	NA	101859059	101768614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101858945
922	chr6	-	4856	28	NIC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	25	-8	combination_of_known_junctions	FALSE	canonical	3	43	junction_18	130.557000254681	607	3	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	71609949	71566028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71593801_71593855_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
924	chr15	-	3280	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-136	503	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	31	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATCAAGGCTTCACGT	622	False	NA	NA	False	NA	NA	NA	36793899	36770510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771693_36771789_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
925	chrX	-	4325	13	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	-20	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	46.6621277554578	174	66	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTGATGTGAAGATTGGA	NA	False	NA	NA	False	NA	NA	NA	49724158	49652003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49656416_49656571_49658153_49659022_49661302_49661458_49661929_49662022_49662100_49662229_49666158_49666396_49666743_49666902_49715313_49715387_49716083_49716187_49719767_49719873_49720649_49720724_49723821
926	chr14	+	3925	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	10	583	1	-2	multi-exon	FALSE	canonical	3	890	junction_17	126.92017018583	1	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	1841	False	NA	NA	False	NA	NA	NA	121148645	121184828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
927	chr19	+	4260	28	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-19	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1022.39859723709	1	103	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	611	False	NA	NA	False	NA	NA	NA	10582931	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10587192_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592212_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
929	chr4	+	374	2	FSM	ENSMUSG00000063524.14	ENSMUST00000148605.2	562	2	-3	191	0	-191	multi-exon	FALSE	canonical	3	16292	junction_1	0	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGGCAAGTTCCAAATTC	NA	False	NA	NA	False	NA	NA	NA	150321696	150324202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_150321798_150323929
931	chr8	-	4364	25	ISM	ENSMUSG00000036550.17	ENSMUST00000213006.2	7479	48	-65	26277	1	685	5prime_fragment	FALSE	canonical	3	674	junction_6	148.112517054884	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTCTGCTGGTTGAATG	NA	False	NA	NA	False	NA	NA	NA	96534089	96473060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
932	chr6	-	2164	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	226	1569	3	553	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGAGAGGTTCAGGAG	8916	False	NA	NA	False	NA	NA	NA	122719478	122706336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
934	chr2	+	5663	18	FSM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	75	-1	-17	1	multi-exon	FALSE	canonical	3	289	junction_1	27.9815806939402	411	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCAGTCACATTACTGA	NA	False	NA	NA	False	NA	NA	NA	156038636	156151873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
938	chrX	+	3080	23	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	17	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	756.157811811553	13	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529153	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539198_20544885_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
939	chr10	+	3413	10	NIC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-5	-154	intron_retention	FALSE	canonical	3	1246	junction_8	134.335493043938	5	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGTGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	128173597	128198194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128195169_128195302_128195405_128195812_128196023_128196836
940	chrX	+	3105	23	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	6005	-476	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	735.068125251211	1	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20535141	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537661_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
941	chr1	-	6710	14	FSM	ENSMUSG00000048402.15	ENSMUST00000062483.15	6637	14	-77	4	-77	-4	multi-exon	FALSE	canonical	3	89	junction_11	11.3908506833309	306	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTATCTTGTTGATCT	1152	False	NA	NA	False	NA	NA	NA	118981426	118761865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118818025_118818132_118929769_118929937_118981031
942	chr12	+	2079	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	43	-38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1987.89397213343	124	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAGTATTAAATGATTTA	NA	False	NA	NA	False	NA	NA	NA	24758282	24764107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761700_24761802_24762659_24762765_24762859_24762974_24763078
943	chr1	-	6238	24	FSM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	9	0	1	0	multi-exon	TRUE	canonical	3	518	junction_15	35.6964730086209	516	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCCTGTCAGTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	135358228	135310049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
945	chr2	-	8763	31	FSM	ENSMUSG00000026924.18	ENSMUST00000114082.9	8797	31	24	10	10	-8	multi-exon	FALSE	canonical	3	86	junction_3	26.343373613365	254	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAACTTAATTTATGGCTT	NA	False	NA	NA	False	NA	NA	NA	26335202	26299452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26300966_26302847_26302926_26303690_26303751_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398_26332083_26335086
946	chr15	-	3718	14	NIC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_12	424.798302295497	1	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGATGTGGCTATGAT	NA	False	NA	NA	False	NA	NA	NA	96953837	96892710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96917604_96917743_96953735
947	chrX	-	3512	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	47	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256257	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233931_93234004_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
949	chr5	-	4136	11	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	526.775369583659	1	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTTATCTATGTCCCT	NA	False	NA	NA	False	NA	NA	NA	92231584	92200023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204178_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
950	chr10	-	2723	20	Fusion	ENSMUSG00000092384.8_ENSMUSG00000040354.15	novel	2939	21	NA	NA	2297	-32	multi-exon	FALSE	non_canonical	0	0	junction_3	846.84882729333	2	18	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAGTAAAAGTAAAAACAT	2912	False	NA	NA	False	NA	NA	NA	127142545	127125596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_127125821_127126431_127126530_127126644_127126759_127129578_127129626_127131186_127131367_127132172_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127142408
951	chrX	-	3462	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	356	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256263	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233506_93233635_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
952	chr3	+	4037	20	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5093.41272701872	1	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	NA	False	NA	NA	NA	102927887	102965502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936478_102946097_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957051_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
953	chr11	+	2049	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	47	4	3	-4	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	14	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
954	chr14	-	4463	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	185	25	185	-25	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	1017	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	52434688	52397895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
955	chr11	-	4602	5	FSM	ENSMUSG00000038615.18	ENSMUST00000081775.12	4654	5	35	17	22	0	multi-exon	FALSE	canonical	3	711	junction_4	320.112870719064	1176	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96720759	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
956	chr15	+	3787	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	67	0	-24	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	21	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	101982274	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
957	chr7	-	6859	37	FSM	ENSMUSG00000032777.10	ENSMUST00000055506.9	6961	37	90	12	-13	-12	multi-exon	FALSE	canonical	3	171	junction_34	23.9112782676933	272	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGAAATGTACGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	125306862	125240137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_125240906_125241618_125241812_125242497_125242538_125243045_125243545_125244686_125244977_125245645_125245906_125246511_125246800_125247568_125247742_125250234_125250329_125251034_125251098_125253638_125253752_125255015_125255098_125256657_125256801_125258228_125258387_125261430_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
958	chr17	+	4323	9	NIC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	0	-10	intron_retention	FALSE	canonical	3	2207	junction_2	216.300572121296	476	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATGACCATTTTTCC	NA	False	NA	NA	False	NA	NA	NA	88282489	88298310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88298059_88298151
960	chr15	+	4593	36	NNC	ENSMUSG00000022191.17	novel	4519	35	NA	NA	11	-48	intron_retention	FALSE	canonical	3	44	junction_3	169.480343812418	228	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACTGCGGTTGTTGTCTT	64	False	NA	NA	False	NA	NA	NA	12824959	12935328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12825025_12826150_12826254_12827312_12827379_12830388_12830523_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
963	chr5	-	4152	27	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-410	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_26	208.909343748252	3	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATACAGTTAGTCTTTA	7201	False	NA	NA	False	NA	NA	NA	100557881	100509512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100557736
964	chr1	+	4159	31	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	213.665314608307	27	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGCTTGCCGTTTCCCTG	3046	False	NA	NA	False	NA	NA	NA	171910377	171949895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944849_171946429_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
965	chr12	-	2722	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4042.49604205125	798	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTGGAATGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659296_110659489_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
966	chr11	-	3436	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1520.48825465519	5	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9657	False	NA	NA	False	NA	NA	NA	106679317	106671180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106671621_106671706_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679094
967	chr9	+	4388	26	NIC	ENSMUSG00000032115.15	novel	4489	26	NA	NA	-17	-3	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	163.052806170271	948	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTGTATGTGTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	44290902	44303657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44290974_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
968	chr7	+	4832	23	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	79	-7	intron_retention	FALSE	non_canonical	0	0	junction_2	282.46759852216	1	93	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAAACCCTTTGTGTTGT	7318	False	NA	NA	False	NA	NA	NA	109617600	109655809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626361_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640109_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648244_109648802_109648901_109649986_109650735_109651917_109652125_109653206_109653324_109654223
970	chr5	-	4883	14	NNC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	-15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	124.85655674939	48	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGTGTGGTCTCAAGC	5516	False	NA	NA	False	NA	NA	NA	148336616	148264219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148266798_148268995_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
974	chr15	-	4530	37	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	104.785568816029	656	7	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	76491801	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484663_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
975	chr14	+	2600	3	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	2882	28	2419	-28	3prime_fragment	FALSE	canonical	3	3503	junction_2	111	51	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAAATAAAAAGTGCCTA	NA	False	NA	NA	False	NA	NA	NA	99539008	99552444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_99539691_99540853_99540914_99550586
976	chr18	-	3854	17	NNC	ENSMUSG00000118030.2	novel	363	2	NA	NA	7158	30093	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	83	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGAAATCAAAACATCCCA	NA	False	NA	NA	False	NA	NA	NA	35724468	35687478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35687514_35689667_35689741_35690385_35690421_35704893_35705987_35710608_35710673_35711468_35711510_35711954_35712069_35712316_35712371_35714221_35714347_35714647_35714771_35714966_35715137_35715765_35715900_35716929_35716974_35717566_35717935_35720683_35720906_35721383_35721505_35723430
977	chr11	+	1630	8	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAGCACTAAGTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	106672376	106676354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296_106673522_106674788_106674845_106674926_106674987_106675237_106675350_106675704_106675879_106675961_106676118_106676215
980	chr17	+	1901	9	FSM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	33	-234	-22	230	multi-exon	FALSE	canonical	3	393	junction_1	74.6521098161331	1104	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	26471902	26499927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
981	chr1	+	4363	33	FSM	ENSMUSG00000026553.18	ENSMUST00000135192.8	4622	33	257	2	-19	-2	multi-exon	FALSE	canonical	1	295	junction_11	137.915678495956	921	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCTCCTGCTTGCCGTTT	3021	False	NA	NA	False	NA	NA	NA	171910352	171949890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
983	chr11	+	5380	21	FSM	ENSMUSG00000035152.15	ENSMUST00000065692.14	3269	21	-97	-2014	-26	-9	multi-exon	FALSE	canonical	3	171	junction_14	24.9631728752577	690	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACACAAAATAAAGTTTGTG	2153	False	NA	NA	False	NA	NA	NA	83193502	83295852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
984	chr1	+	4082	27	Intergenic	novelGene_417	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	33	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGCTACGCTTGACCT	NA	False	NA	NA	False	NA	NA	NA	93335483	93406522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_93335984_93336092_93336220_93336410_93336525_93336669_93336859_93340084_93340228_93341211_93341350_93341550_93341653_93342532_93342689_93344222_93344365_93344896_93345120_93345192_93345412_93347790_93348013_93348808_93348938_93349064_93349150_93350983_93351098_93351489_93351596_93352987_93353129_93355279_93355359_93355869_93355973_93357097_93357207_93357818_93358029_93358678_93358890_93359026_93359224_93366048_93366106_93368401_93368517_93369910_93369976_93406436
985	chr9	-	879	5	ISM	ENSMUSG00000032449.14	ENSMUST00000153070.8	1203	8	-121	10941	29	-156	5prime_fragment	FALSE	canonical	3	41	junction_1	291.449395264427	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTTTTTCTTTAAGACA	NA	False	NA	NA	False	NA	NA	NA	96993181	96971910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_96972228_96975129_96975231_96979155_96979234_96982127_96982293_96992963
986	chr4	-	2940	1	Antisense	novelGene_ENSMUSG00000035637.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTGGTTGGTTGGTTGG	NA	False	NA	26	True	NA	NA	NA	44991215	44988275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_44988300_44991200
987	chr9	+	6085	34	FSM	ENSMUSG00000037286.16	ENSMUST00000129269.8	6186	34	98	3	-54	-2	multi-exon	FALSE	canonical	3	316	junction_9	35.0771941586826	427	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTTGTGGTTATCCTGT	NA	False	NA	NA	False	NA	NA	NA	100525598	100840595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
989	chr4	+	5347	25	FSM	ENSMUSG00000028312.20	ENSMUST00000117280.8	5328	25	-19	0	-19	0	multi-exon	FALSE	canonical	3	100	junction_1	79.8595990195014	307	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	NA	False	NA	NA	False	NA	NA	NA	52439223	52488260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_52439335_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
991	chr9	+	4435	27	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	3	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	222.189161906334	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATAGGTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	44290872	44303650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291410_44291516_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
992	chrX	-	5178	20	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	-4	-141	intron_retention	TRUE	non_canonical	0	0	junction_1	18.6937707194646	2	111	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATGTCCTTTAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	49724142	49652142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653172_49658481_49658486_49666232_49666902_49669215_49669423_49669640_49670434_49672739_49673230_49673555_49673725_49680801_49680963_49683753_49683891_49684337_49684493_49685306_49685449_49687010_49687166_49687947_49688034_49689030_49689168_49689620_49689776_49692256_49692403_49715313_49715387_49716083_49716128_49719767_49719873_49723821
993	chr8	+	4404	15	ISM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	760	10	-32	-10	3prime_fragment	FALSE	canonical	3	808	junction_7	90.1298383172967	34	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAACTGTTGTGAGGCTC	5809	False	NA	NA	False	NA	NA	NA	107330742	107396868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
994	chr11	-	3605	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1820.01659600187	2	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCTCTTCATTTATTTA	9656	False	NA	NA	False	NA	NA	NA	106679318	106671183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673629_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675825_106675931_106676123_106676220_106676363_106676888_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
995	chrX	-	1366	10	FSM	ENSMUSG00000031371.15	ENSMUST00000033737.15	1380	10	14	0	14	0	multi-exon	FALSE	canonical	3	498	junction_3	42.8281089190294	1728	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	NA	False	NA	NA	NA	72502636	72480920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
997	chrX	-	5353	37	FSM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	-10	3	-10	-3	multi-exon	FALSE	canonical	3	370	junction_20	43.7489682418023	262	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTTACTGTGTTTTGTT	4267	False	NA	NA	False	NA	NA	NA	92675771	92348375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
998	chr18	-	3806	16	NIC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	5	-221	intron_retention	FALSE	canonical	3	5978	junction_5	271.883667933344	15	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTCCTTTGTGAATGGTG	204	False	NA	NA	False	NA	NA	NA	35087405	35070687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
999	chr11	-	3979	28	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	-145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	934.659936104636	1	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGACTTGTCTGTTACTG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368111_100369188_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
1000	chr5	-	4034	14	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23527	45630	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	82	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256869	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108217026_108217228_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235263_108235807_108235956_108239926_108240020_108241200_108241271_108246982_108247053_108248678_108248857_108251891_108252017_108252269_108252396_108254452
1001	chr16	-	5394	10	NIC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	579	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	758.226146270945	16	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAGAAGTGTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	22084679	22064618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22076979_22077735_22078012_22084490
1002	chr7	-	6467	32	NNC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	-28	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	50.7273218913073	4	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTCCTGGTGGTATTGA	9951	False	NA	NA	False	NA	NA	NA	101859102	101768610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835094_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101858945
1005	chr3	-	4080	28	NIC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	204	junction_23	264.679514775583	136	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACCTCTACCTTCAGC	3547	False	NA	NA	False	NA	NA	NA	89959782	89907605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
1006	chr12	+	822	1	Intergenic	novelGene_4294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTGGCTACCTTTTT	5635	False	NA	NA	False	NA	NA	NA	17421995	17422817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_17422000_17422800
1007	chr12	-	2650	12	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	8	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	3964.06981574899	111	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGGAATGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	110662715	110657463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660604_110660695_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1008	chr9	+	1955	6	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-4	98	intron_retention	FALSE	canonical	3	3928	junction_2	6407.61749794727	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGATTTTGTAACTTTCA	2466	False	NA	NA	False	NA	NA	NA	40712578	40715731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_40712645_40713213_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460
1010	chr17	+	4181	11	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	805.485046416133	18	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATGACCATTTTTCC	NA	False	NA	NA	False	NA	NA	NA	88282489	88298310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88293594_88293653_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
1011	chr10	+	4750	9	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	0	-6	intron_retention	FALSE	non_canonical	0	0	junction_6	510.971118924544	5	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGTTTGAGCTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	128173602	128198342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189498_128193559_128195405_128195812_128196023_128196836
1012	chr9	-	5806	17	NNC	ENSMUSG00000039542.17	novel	6050	18	NA	NA	-1354	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	44.5564512023792	393	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACTCTAGTCCAACTGG	9144	False	NA	NA	False	NA	NA	NA	49481203	49413438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334_49431513_49434821_49434947_49454306_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125
1013	chr19	+	4311	19	FSM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	3	3	3	-3	multi-exon	TRUE	canonical	3	230	junction_1	37.3718386086055	978	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACATCATCTGTCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	3373287	3435730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
1014	chr17	-	5191	13	NIC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-6	intron_retention	FALSE	canonical	3	678	junction_3	51.8456576988104	23	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGAACTGTGGTGGATTTC	NA	False	NA	NA	False	NA	NA	NA	29226925	29189859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
1015	chr11	-	3691	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1107.73549115633	37	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACATGTCTGCAGGTTTC	8148	False	NA	NA	False	NA	NA	NA	50216488	50185295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189027_50189992_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
1016	chr15	+	4509	35	FSM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	-35	45	13	-44	multi-exon	FALSE	canonical	3	495	junction_3	95.4793814587056	34	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGGTTGTTGTCTTAATG	18	False	NA	NA	False	NA	NA	NA	12824913	12935332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
1017	chr15	+	3360	5	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCCCCGGCAGCAGGGG	NA	False	NA	NA	False	NA	NA	NA	36770583	36793873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775823_36776488_36776614_36790927_36791235_36793724
1018	chr15	-	6464	38	FSM	ENSMUSG00000036606.18	ENSMUST00000109331.9	6497	38	27	6	27	-6	multi-exon	FALSE	canonical	0	0	junction_37	73.775209877053	602	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGGTTGACTGGGTT	9170	False	NA	NA	False	NA	NA	NA	89064964	89039757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89040589_89040700_89040776_89041195_89041272_89041388_89041454_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89055269_89055320_89064867
1019	chr15	-	4538	36	NIC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-24	1	intron_retention	FALSE	canonical	3	484	junction_24	48.797658023428	53	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	76491735	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
1020	chr7	+	5275	2	ISM	ENSMUSG00000045411.17_ENSMUSG00000080352.3	ENSMUST00000186606.2	748	3	-3178	-679	0	-2	intron_retention	FALSE	canonical	3	709	junction_1	0	19	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTAGGGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43899484_43899732
1021	chrX	+	3675	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-53	-2	intron_retention	FALSE	non_canonical	0	0	junction_9	1134.86050244072	15	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGTGCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473287	100492195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100489107_100489152_100489835_100491199
1023	chr7	+	4146	24	NIC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	195.478821753798	1	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGTCTTGATCTGATTG	7240	False	NA	NA	False	NA	NA	NA	109617522	109655323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_109617716_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
1024	chr11	-	4167	27	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1049.52126378463	1	69	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGATGCTCTTTTATGTT	NA	False	NA	NA	False	NA	NA	NA	100418695	100367179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410443_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
1026	chr12	-	2739	13	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	73	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5760.70845553932	10	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTGTGGAATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	110669089	110657466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659110_110659175_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110668789_110668853_110669056
1027	chrX	+	3544	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	38	-483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	705.216612396503	1	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCAGATGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	20529174	20548935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547434_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1028	chr6	-	4096	15	NIC	ENSMUSG00000040669.15	novel	4213	15	NA	NA	34	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_14	285.547388754458	710	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGAAAGTTGGCCTCCAT	8262	False	NA	NA	False	NA	NA	NA	122317431	122294708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122317155
1029	chr14	-	4788	21	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11270	60081	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1177	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGGACCTCTGGTCCGC	NA	False	NA	NA	False	NA	NA	NA	19861853	19801337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19801610_19802368_19802616_19813731_19813967_19818277_19819004_19828061_19828212_19828803_19829049_19829601_19829804_19831200_19831431_19839734_19839882_19840344_19840475_19841575_19841717_19847228_19847349_19848461_19848712_19852403_19852626_19853114_19853287_19855365_19855493_19855907_19856081_19857992_19858159_19860051_19860170_19861019_19861133_19861251
1030	chr5	+	3868	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	-58	intron_retention	FALSE	non_canonical	0	0	junction_2	629.055661694738	2	80	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTGCTTTACTTAGAA	NA	False	NA	NA	False	NA	NA	NA	108208609	108256812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228887_108229020_108229089_108234877_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
1031	chr9	-	286	2	NNC	ENSMUSG00000037742.15	novel	842	3	NA	NA	24	-341	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGCACATCCCAGGTGTG	8160	False	NA	-20	True	NA	NA	NA	78387946	78387537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78387666_78387788
1032	chr13	-	4306	30	FSM	ENSMUSG00000042590.18	ENSMUST00000080856.14	4325	30	19	0	6	0	multi-exon	FALSE	canonical	0	0	junction_13	115.519794104579	672	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGACTTGTTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	107073447	106930946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
1033	chr6	-	4350	24	FSM	ENSMUSG00000012535.15	ENSMUST00000170350.8	3590	24	-16	-744	-8	0	multi-exon	FALSE	canonical	3	27	junction_23	180.197874854504	926	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	15	True	NA	NA	False	NA	NA	NA	29609826	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29599538_29599698_29609364
1034	chrX	+	3112	23	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	986.19650029296	2	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538083_20539119_20539175_20541818_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1035	chr3	+	4417	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	42	11	-21	-3	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	100	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTGTATTTTCCCTA	NA	False	NA	NA	False	NA	NA	NA	102965642	102975219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
1036	chr15	-	3971	16	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	55	1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_15	405.993836844299	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96953782	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917836_96953735
1037	chr9	+	5581	21	NIC	ENSMUSG00000032293.9	novel	5770	22	NA	NA	-34	-4	combination_of_known_splicesites	FALSE	canonical	3	11	junction_4	64.8093164599041	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTTGACTCGTTGTGTT	2592	False	NA	NA	False	NA	NA	NA	54771038	54819810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
1038	chr11	+	4443	9	FSM	ENSMUSG00000000275.17	ENSMUST00000107896.10	5590	9	80	1067	80	-1067	multi-exon	FALSE	canonical	3	172	junction_5	154.213123630902	55	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATATTTTATATTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	88890281	88910052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020
1039	chrX	+	3797	26	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	42	-724	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	226.532032172053	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799465	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810862_150810908_150810949_150811036_150811178_150811960_150812044_150812186_150812341_150816721_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
1040	chr15	+	6528	30	NIC	ENSMUSG00000058290.5	novel	6658	31	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	75.1147833503137	288	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTGAGAGTTGAAGCTA	399	False	NA	NA	False	NA	NA	NA	102204740	102232792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102204851_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
1042	chr3	+	976	2	ISM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	6830	5	6830	-5	3prime_fragment	FALSE	canonical	3	5032	junction_1	0	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGATGTGTTTGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	88493807	88495721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88494250_88495187
1043	chr9	+	4438	25	NIC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	5	-5	intron_retention	FALSE	canonical	3	476	junction_1	90.9735824749874	30	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTTGTATGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	44290874	44303655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
1044	chr4	-	178	1	Intergenic	novelGene_2172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12160	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTTTAAAAGCTGGTC	6987	False	NA	NA	False	NA	NA	NA	152113810	152113632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_152113600_152113800
1045	chrX	-	1543	11	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	96	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCACGTTGCCCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	20548943	20542201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
1046	chr6	-	5244	16	NIC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	1	-5	intron_retention	FALSE	canonical	0	0	junction_12	187.319501268703	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	9399	False	NA	NA	False	NA	NA	NA	82751434	82702010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720925_82721022_82721842_82721963_82726169_82726319_82750898
1048	chr1	+	3519	11	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	543.193004373215	9	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTACTGTGTCTGTGCTTT	895	False	NA	NA	False	NA	NA	NA	58432294	58446512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442917_58444193
1050	chr8	+	4050	17	NNC	ENSMUSG00000000303.13	novel	3203	17	NA	NA	-33	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	254.482563253359	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGAGGCTCACTTGA	5016	False	NA	NA	False	NA	NA	NA	107329949	107396874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395714_107396122
1051	chr3	+	4438	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	27	5	27	3	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	97	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965627	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
1052	chr7	-	3687	21	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	-5	intron_retention	FALSE	canonical	0	0	junction_11	2109.94367223393	1	98	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATGTAGTTGTACATGA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676040_110676144_110676277_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680713_110680841_110681991
1053	chr7	+	3887	23	ISM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	11478	498	-314	-4	3prime_fragment	FALSE	canonical	3	611	junction_6	112.715111147493	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAATTATGTCTTGATCT	NA	False	NA	NA	False	NA	NA	NA	109628958	109655318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
1054	chr5	-	4083	12	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	503.721325291792	15	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTATGTCCCTAATTT	NA	False	NA	NA	False	NA	NA	NA	92231578	92200018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202777_92202879_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
1057	chr3	+	3937	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	-104	0	-19	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	2612	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	135144221	135173959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
1059	chr9	-	5450	25	NIC	ENSMUSG00000036777.9	novel	4605	24	NA	NA	13	804	combination_of_known_junctions	FALSE	canonical	3	159	junction_4	113.4790423627	592	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGCTGTTATTGAGCAT	7196	False	NA	NA	False	NA	NA	NA	22300471	22242503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22260542_22260597_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
1060	chr1	+	4028	22	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	23	-15	intron_retention	FALSE	non_canonical	0	0	junction_11	115.237603304735	42	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTGCCTTTCTAACTGG	9393	False	NA	NA	False	NA	NA	NA	87603983	87648209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628920_87629124_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
1061	chr1	-	4449	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	98	4	50	-4	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	358	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTGTGTAATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79739388	79679982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
1062	chrX	-	5214	36	NIC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	4	-22	combination_of_known_splicesites	FALSE	canonical	2	20	junction_1	83.6951221361661	5	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGTTTCCTAAAGGAAAA	4293	False	NA	NA	False	NA	NA	NA	92675745	92348394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_92349423_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
1064	chr10	-	4751	22	FSM	ENSMUSG00000020124.11	ENSMUST00000220377.2	11525	22	36	6738	-6	-8	multi-exon	FALSE	canonical	3	236	junction_15	99.6636747895759	866	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCCTTATTTAGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	123032864	122947648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
1065	chr12	-	3805	4	Antisense	novelGene_ENSMUSG00000116705.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGAAGATCCCGCCTCC	NA	False	NA	NA	False	NA	NA	NA	19459650	19447998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_19448113_19454314_19454440_19454641_19454704_19456146
1066	chr10	-	5959	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2481	0	intron_retention	FALSE	canonical	3	239	junction_24	221.439792262417	713	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTGGAGTGGGCCTTTT	9370	False	NA	NA	False	NA	NA	NA	121464718	121423284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
1067	chr6	-	3540	11	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	874	junction_10	2524.61263563344	1003	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTACTTGGTGTAATGCTT	NA	False	NA	NA	False	NA	NA	NA	51446825	51438102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
1070	chr1	-	5400	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	48	-897	0	897	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	709	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACAGTGTACTCACAT	NA	False	NA	NA	False	NA	NA	NA	79739438	79679081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
1071	chr19	+	3879	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	-29	-62	7	62	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	1475	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTCTGTATAAGCTGC	1870	False	NA	NA	False	NA	NA	NA	8875441	8894098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
1072	chr17	+	4242	10	FSM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	-1	10	-1	-10	multi-exon	FALSE	canonical	3	2207	junction_2	252.867310151411	13	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATGACCATTTTTCC	NA	False	NA	NA	False	NA	NA	NA	88282488	88298310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
1073	chr4	+	4618	10	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	83825	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	116.775927673261	303	94	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGGTGATTTGCAATC	NA	False	NA	NA	False	NA	NA	NA	147576867	147681768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597429_147597511_147598004_147598082_147598269_147599020_147599980_147601735_147603437_147681532
1074	chr4	+	3340	9	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	120.605697937535	341	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACAAGGTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147600517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578924_147580450_147580533_147591995_147592098_147595209_147595337_147596801_147597216_147597299_147597998_147598581_147598865_147599115
1075	chr9	+	2388	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	3928	junction_2	6450.55656513452	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATACAGTTGTCCTG	2456	False	NA	NA	False	NA	NA	NA	40712568	40716489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_40712645_40713213_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
1076	chr7	-	2519	24	NNC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	156.990421486673	20	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACGCCTTCCAGGTGA	NA	False	NA	NA	False	NA	NA	NA	28038171	28016224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
1077	chr11	+	5534	9	FSM	ENSMUSG00000000275.17	ENSMUST00000107896.10	5590	9	53	3	53	-3	multi-exon	FALSE	canonical	3	172	junction_5	154.213123630902	426	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGACATTGTCCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	88890254	88911116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020
1078	chr13	+	4224	33	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	14	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	374.245166082259	8	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGATACTGTGTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	49835589	49887732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885026_49887146
1079	chr15	-	3798	15	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGATTATAGCGGGCGCG	3540	False	NA	NA	False	NA	NA	NA	102005593	101982340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982394_101990405_101990548_101992594_101992805_101993113_101993229_101994435_101994491_101994937_101995075_101997050_101997187_101997289_101997469_101998303_101998528_101999829_101999928_102001418_102001633_102002090_102002147_102003104_102003211_102003409_102005405_102005515
1083	chr6	+	6349	27	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	-13	-6	combination_of_known_junctions	FALSE	canonical	3	162	junction_24	66.2109436064344	5	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCAACACTGTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	83891335	83963845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
1084	chr3	+	4397	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	68	5	5	3	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	1345	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965668	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
1086	chr1	-	3485	14	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-1717	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	779.7673754161	10	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGAAAATAAAGAGTTGCT	NA	False	NA	NA	False	NA	NA	NA	181672328	181642911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649194_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181672250
1088	chr18	+	5327	12	NNC	ENSMUSG00000037236.17	novel	1888	14	NA	NA	20	4	intron_retention	FALSE	canonical	0	0	junction_2	436.808731332828	31	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGTCATGTTGATTGGT	NA	False	NA	NA	False	NA	NA	NA	35695291	35724476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695346_35710610_35711515_35711957_35712071_35712318_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
1089	chr4	-	4729	20	Antisense	novelGene_ENSMUSG00000028312.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	56	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGGAATAACAATAGAATTA	NA	False	NA	NA	False	NA	NA	NA	52488254	52449320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_52449431_52449609_52449654_52450817_52451052_52451225_52451373_52457254_52457494_52458412_52458573_52459018_52459139_52460157_52460295_52461047_52461170_52462802_52463006_52465930_52466077_52467791_52467914_52469770_52469973_52470770_52470904_52474891_52475114_52476641_52476842_52478392_52478511_52481667_52481829_52484036_52484188_52486496
1092	chr9	+	4664	26	FSM	ENSMUSG00000032115.15	ENSMUST00000160902.8	3374	26	-30	-1260	9	-1	multi-exon	FALSE	canonical	3	130	junction_1	146.389890361322	986	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTATGTGTTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	44290889	44303659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44291235_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
1093	chr5	+	7108	49	FSM	ENSMUSG00000007080.15	ENSMUST00000007296.12	7163	49	34	21	-1	0	multi-exon	FALSE	canonical	2	122	junction_13	49.0675377809901	681	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATGCTTCCACACAA	NA	False	NA	NA	False	NA	NA	NA	110434205	110485319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824_110438980_110441125_110441268_110441580_110441662_110442374_110442483_110442757_110442869_110443093_110443180_110443383_110443504_110444871_110445005_110445213_110445328_110445598_110445812_110446106_110446215_110446757_110446887_110446965_110447069_110447154_110447302_110447638_110447785_110449873_110450023_110451440_110451534_110451720_110451866_110454192_110454351_110454632_110454829_110456801_110457017_110459872_110459976_110460599_110460681_110460771_110460895_110465655_110465866_110466091_110466302_110466481_110466626_110471403_110471545_110471795_110471950_110472025_110472133_110472286_110472464_110472545_110472770_110472949_110473171_110473377_110473583_110475567_110475742_110477411_110477538_110478794_110478937_110480247_110480426_110482026_110482159_110482288_110482483_110483705_110483907_110484239_110484366_110484823_110484914_110484997
1094	chr3	+	4415	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	42	13	-21	-5	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	92	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTAACTGTATTTTCCC	NA	False	NA	NA	False	NA	NA	NA	102965642	102975217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
1095	chr8	-	4472	13	FSM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	-29	0	-29	0	multi-exon	FALSE	canonical	3	323	junction_9	43.0880074833925	688	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCAGTGTCTTCCGCCTG	5467	False	NA	NA	False	NA	NA	NA	112026883	111997575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
1097	chr8	-	3189	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	285	0	-48	0	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	2294	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86026146	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
1098	chr17	+	4185	11	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	805.485046416133	1950	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCATTTTTCCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	88282489	88298317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282685_88282747_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
1099	chr9	+	4498	23	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-9	-25	intron_retention	FALSE	non_canonical	0	0	junction_13	235.376996706374	59	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAATAAAATATTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	44291816	44303635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296260_44296414_44296569_44296863_44297003_44298328_44298629_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
1101	chr13	-	4645	6	Antisense	novelGene_ENSMUSG00000113690.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	129	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAACAAGGCACACGGAAG	NA	False	NA	NA	False	NA	NA	NA	62323921	62277728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62277842_62317254_62317380_62317564_62317629_62318965_62321982_62322538_62323660_62323715
1103	chr1	+	3857	23	NNC	ENSMUSG00000026288.15	novel	3942	23	NA	NA	36	-2	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_6	124.11268540196	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGGCCTCCTGACTGT	9406	False	NA	NA	False	NA	NA	NA	87603996	87648222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625117_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
1104	chr13	-	4427	11	NIC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-2	632	intron_retention	FALSE	canonical	3	330	junction_7	2073.33377920681	18	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTGTGTGTCTGTTGG	4749	False	NA	NA	False	NA	NA	NA	58550332	58538323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_58540291_58541009_58541974_58542123_58542179_58542291_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
1105	chr15	-	4536	35	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	45	0	intron_retention	FALSE	non_canonical	0	0	junction_17	106.718998480487	77	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACGAGTGTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	76491644	76480010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484613_76484663_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
1106	chr17	-	2264	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	195	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879402_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
1107	chr1	-	4481	28	NIC	ENSMUSG00000034088.16	novel	4427	28	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_27	108.478339167721	8	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	93406089	93335483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93405928
1109	chr3	+	5279	6	NNC	ENSMUSG00000041220.11	novel	5951	5	NA	NA	30	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	160.505451620809	6	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAACTGTTTCTAGTTC	NA	False	NA	NA	False	NA	NA	NA	129326064	129432137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708_129426790_129427424
1110	chrX	-	6400	10	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	3	69	junction_9	64.4373559319916	141	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTGTTGAAGCATTTA	NA	False	NA	NA	False	NA	NA	NA	104972935	104909153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
1111	SIRV8003	+	7996	1	FSM	SIRV8003A	SIRV8003	8000	1	4	0	4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	429	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	4	8000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV8003_+_0_8000
1114	chr2	+	2631	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	179	14	179	-14	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	161	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTTTTTTGGACTGGGG	NA	False	NA	NA	False	NA	NA	NA	29952043	29962575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
1115	chr10	+	1136	5	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	-151	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	3415.11034777795	3	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	6450	False	NA	NA	False	NA	NA	NA	81016733	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81016992_81017061_81017245_81017326_81017460_81017722_81017898_81017945
1116	chr6	-	4201	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	50	0	-18	0	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	854	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	5	True	NA	NA	False	NA	NA	NA	29609836	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
1118	chr1	+	2820	17	Antisense	novelGene_ENSMUSG00000026355.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTACGCGCTGCTGAGGG	3137	False	NA	NA	False	NA	NA	NA	128259329	128287312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_128259791_128261255_128261394_128262499_128262654_128263464_128263601_128265850_128266017_128267088_128267211_128269014_128269177_128271146_128271255_128272032_128272175_128273607_128273750_128276104_128276257_128276661_128276807_128277039_128277205_128279167_128279419_128281195_128281308_128283249_128283395_128287193
1120	chr4	+	3089	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-63	2574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	129.181422813035	17	32	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACAAGGTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147576810	147600517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597189_147598027_147598853_147599020
1121	chr19	+	3969	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-40	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1204.11211856822	1	80	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	713	False	NA	NA	False	NA	NA	NA	10583033	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584310_10585156_10585274_10585614_10585837_10588065_10588171_10589007_10589106_10590236_10590396_10591471_10591514_10592248_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602547_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
1124	chr8	+	3966	17	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	254.482563253359	4	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5016	False	NA	NA	False	NA	NA	NA	107329949	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395358_107395854
1125	chr3	+	4181	19	FSM	ENSMUSG00000068823.11	ENSMUST00000197488.5	3827	19	21	-375	21	-7	multi-exon	FALSE	canonical	0	0	junction_11	4738.14950757918	111	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTAGCACCTAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	102928000	102965495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102928208_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
1127	chrX	+	3836	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	49	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	179.361594543599	37	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799472	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812383_150816764_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
1128	chr7	+	4588	24	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	6	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	239.323360910515	4	71	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGAAAACCCTTTGTG	7245	False	NA	NA	False	NA	NA	NA	109617527	109655805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648887_109650226_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
1129	chr2	-	5068	4	FSM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	1	4	1	-4	multi-exon	FALSE	canonical	3	532	junction_3	46.1808040928985	794	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGGCGGGCTTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	168609120	168590255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168592381_168594373_168594661_168596353_168598721_168608831
1130	chr5	+	3150	3	ISM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	159	4466	50	2530	intron_retention	FALSE	canonical	3	187	junction_1	1.5	46	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAGATGATGATGACGA	673	False	NA	NA	False	NA	NA	NA	122988269	123004888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122988362_122999751_122999971_123002049
1131	chr1	+	6695	9	FSM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	26	17	26	-17	multi-exon	FALSE	canonical	3	399	junction_6	47.8289595851718	379	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTATTGACAACCAAATCC	NA	False	NA	NA	False	NA	NA	NA	127701926	127735781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898
1133	chr6	-	3719	10	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	12	-3	intron_retention	FALSE	canonical	3	5712	junction_9	757.172925761462	691	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTGTGCACTGCTACA	NA	False	NA	NA	False	NA	NA	NA	51446852	51437914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
1134	chr9	-	4618	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	29	-13	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_4	385.517410072992	4	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAATGTGTATCTTAAG	NA	False	NA	NA	False	NA	NA	NA	96993181	96957630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971581_96975129_96975231_96979155_96979234_96982127_96982293_96992963
1135	chr5	-	5226	2	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-15	0	intron_retention	FALSE	canonical	3	934	junction_1	0	25	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184836_100184943
1136	chr1	+	4319	11	ISM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	238	-1	4	1	intron_retention	FALSE	canonical	3	1701	junction_6	88.3110978303407	7	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTACTGTGTCTGTGCTTTA	895	False	NA	NA	False	NA	NA	NA	58432294	58446513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390
1137	chr4	+	3436	6	Fusion	ENSMUSG00000082248.2_ENSMUSG00000078496.10	novel	1244	3	NA	NA	-22	2553	multi-exon	TRUE	canonical	0	0	junction_5	133.081328517565	3	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTCCAATAAAGCTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	147527905	147600496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147527997_147536170_147536264_147591995_147592098_147595209_147595337_147596801_147597042_147597713
1138	chr4	+	2135	4	Fusion	ENSMUSG00000082248.2_ENSMUSG00000065999.14	novel	628	4	NA	NA	-47	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	47.6118565998942	8	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147527880	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147527937_147665698_147665826_147667290_147667431_147667838
1139	chr5	-	707	5	NNC	ENSMUSG00000029624.11	novel	3087	9	NA	NA	18882	6210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	149	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAGAATAAAAGCAGTAGA	NA	False	NA	NA	False	NA	NA	NA	145084884	145078113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_145078170_145079256_145079376_145081706_145081830_145083250_145083419_145084643
1140	chr14	+	3681	20	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	74	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	447.262253656293	46	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGCATTACTTCATTA	1914	False	NA	NA	False	NA	NA	NA	121148718	121185411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121153500_121153582_121154767_121154849_121157334_121157528_121159537_121159572_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
1141	chr12	-	2560	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4138.75546632076	671	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGGAATGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659492_110659845_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1143	chr18	-	4754	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_2	332.536073231161	1221	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	NA	NA	NA	35065040	35035837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35039602_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
1145	chr13	+	3619	7	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	3	4203	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	16.3978318349985	1	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTTCTTTGCTGACCA	NA	False	NA	NA	False	NA	NA	NA	61803119	61895787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61803248_61803432_61803494_61841560_61841581_61891418_61891901_61892236_61892628_61892710_61893363_61893902
1146	chr1	-	4411	28	FSM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-10	1830	4	-8	multi-exon	FALSE	canonical	3	431	junction_27	59.547263104276	202	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAAAACGTTTGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	93406533	93335491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
1147	chr6	+	2920	22	ISM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	6436	0	6393	0	3prime_fragment	FALSE	canonical	3	149	junction_8	25.4919844233686	289	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	90534222	90576151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
1149	chr8	-	4430	27	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-1	-253	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_26	240.085552429144	851	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTGTGTAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	111573420	111537123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111556150_111556180_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573189
1150	chrX	+	5957	22	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	134	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGGTGTGTCTGCAGGT	NA	False	NA	NA	False	NA	NA	NA	49652171	49724153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49653197_49666253_49666902_49669215_49669430_49669646_49670434_49672996_49673083_49673555_49673729_49680806_49680963_49684337_49684498_49685313_49685448_49687009_49687165_49689619_49689776_49692247_49692403_49694884_49695040_49695838_49695981_49697353_49697487_49697566_49697692_49700981_49701727_49702548_49702694_49704237_49704390_49715306_49715387_49719767_49719877_49723831
1151	chr12	+	5110	25	NIC	ENSMUSG00000020608.8	novel	5272	26	NA	NA	-19	1	combination_of_known_junctions	FALSE	canonical	3	100	junction_2	124.985825585233	13	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTAAGGTCATGCTTT	4581	False	NA	NA	False	NA	NA	NA	11316150	11369781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_11316290_11321729_11321873_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
1152	chr11	-	4523	6	NNC	ENSMUSG00000038615.18	novel	4596	5	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	590.984737535581	2	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96720318	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96709198_96709243_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720236
1153	chr11	-	4239	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	787.401416304165	1	80	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTTTAAATAAACTAGATAG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405098_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
1154	chr6	+	4060	24	FSM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	80	0	-34	0	multi-exon	TRUE	canonical	0	0	junction_2	198.307183759023	1354	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	87864875	87890577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
1156	chr11	+	4059	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-9	-237	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	743.678410067147	1	94	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAATCCATGATGCTAT	NA	False	NA	NA	False	NA	NA	NA	72332193	72342357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332552_72333218_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338945_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
1158	chr8	-	3432	17	Antisense	novelGene_ENSMUSG00000005410.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	172	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTTCGTTCAGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	75855068	75836147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_75836248_75836325_75836498_75836712_75836842_75836924_75837055_75839169_75839345_75840792_75840945_75842475_75842644_75844145_75844320_75845882_75845996_75847406_75847550_75847837_75847901_75848160_75848342_75849618_75849733_75850468_75850596_75851426_75851570_75852862_75852991_75853848
1159	chr14	+	4235	20	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	366.418520077733	33	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTGTGGTCTAAATATC	NA	False	NA	NA	False	NA	NA	NA	19801351	19861852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860127_19861714
1160	chr9	+	5345	6	NNC	ENSMUSG00000057982.9	novel	1766	5	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	62.806369103778	1729	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATAAGTTGCCTTGGTT	750	False	NA	NA	False	NA	NA	NA	22137019	22154642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837_22151994_22152066
1161	chr13	+	4261	33	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	379.700437022398	26	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	NA	False	NA	NA	NA	49835650	49887743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856031_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
1162	chr1	+	3644	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	230	2	4	-2	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	2333	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACGTACTGTGTCTGTGCT	887	False	NA	NA	False	NA	NA	NA	58432286	58446510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
1163	chr14	+	3631	18	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	10355	32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	307.477222269444	1	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATGAAATTGAAAATGAAA	NA	False	NA	NA	False	NA	NA	NA	121163613	121185443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121163736_121163824_121163922_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
1165	chr6	-	4770	26	FSM	ENSMUSG00000053470.14	ENSMUST00000167220.4	4853	26	16	67	16	-4	multi-exon	FALSE	canonical	3	176	junction_18	109.170809285266	37	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTCGCTGTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	71609654	71566024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480
1166	chr4	-	3079	6	Antisense	novelGene_ENSMUSG00000078496.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTCTTGGTTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	147600520	147576836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147577002_147578825_147578925_147592040_147592096_147595207_147595336_147596800_147598188_147599275
1167	chr5	-	3373	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	462.5	21	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963451	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937568_135937712_135940506_135963176
1168	chr6	+	5177	14	ISM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	-9	42	-9	-42	intron_retention	FALSE	canonical	0	0	junction_7	220.608652402377	937	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCATACATATGAAATTT	5428	False	NA	NA	False	NA	NA	NA	125108862	125121674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998
1170	chr4	-	2667	5	NNC	ENSMUSG00000062518.8	novel	2885	4	NA	NA	-53	-372	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	103.832497321407	8	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACACTTGAGGCTCCACA	NA	False	NA	NA	False	NA	NA	NA	147787063	147758330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147760511_147762673_147762801_147766723_147766828_147784759_147784854_147786901
1172	chr6	-	3144	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2858.84094695735	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705244_122705815_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
1173	chr15	-	4272	13	FSM	ENSMUSG00000037458.16	ENSMUST00000110329.8	4217	13	-3	-52	0	52	multi-exon	FALSE	canonical	0	0	junction_10	173.208669112015	788	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGTGTATATTGCCC	NA	False	NA	NA	False	NA	NA	NA	38519510	38488429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
1175	chrX	-	8357	46	FSM	ENSMUSG00000031328.17	ENSMUST00000101454.9	8345	46	-23	11	-2	-11	multi-exon	FALSE	canonical	3	440	junction_27	88.6461017644018	394	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCCTGTGAATGTAGCT	NA	False	NA	NA	False	NA	NA	NA	73290163	73267079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111_73274360_73276754_73276945_73277527_73277685_73277768_73277893_73278209_73278381_73278470_73278632_73278715_73278879_73278961_73279136_73279225_73279824_73280348_73280612_73280727_73280846_73281026_73281197_73281287_73281379_73281461_73281623_73281709_73281834_73282704_73282849_73282939_73283054_73283257_73283452_73283551_73283689_73283810_73283935_73284018_73284157_73284708_73284910_73284992_73285156_73285248_73285327_73285406_73285526_73286097_73286246_73286333_73286432_73286522_73286772_73289669
1176	chrX	+	3013	23	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-17	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	834.877232772372	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524642	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538050_20539145_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1177	chr1	-	3509	14	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-8	20	at_least_one_novel_splicesite	FALSE	canonical	2	35	junction_5	595.485690088848	2397	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	181669952	181642879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648267_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
1178	chr2	+	3978	22	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	344.707329276798	273	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7232	False	NA	NA	False	NA	NA	NA	29779835	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29780777_29781015_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
1180	chr1	+	4689	30	FSM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	-11	-29	-11	0	multi-exon	FALSE	canonical	3	77	junction_23	82.0288369004111	656	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAATTGGTCTTAATTT	3293	False	NA	NA	False	NA	NA	NA	43973155	44042160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
1181	chr12	-	2757	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	4153.52792815939	4	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGAAGTGTGGAATG	NA	False	NA	NA	False	NA	NA	NA	110662743	110657471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660757_110660988_110661139_110661485_110661853_110661952_110662115_110662685
1182	chr8	-	6205	13	NNC	ENSMUSG00000033658.17	novel	3104	12	NA	NA	85	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.240162943315	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATGGGTATTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	111758298	111729820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731178_111731461_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
1183	chr1	-	3670	14	NIC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	4	18	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	592.565977651284	441	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTTTGCCACAGCTTT	NA	False	NA	NA	False	NA	NA	NA	181670607	181642881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181670373
1185	chr6	-	2342	1	NIC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	9738	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAAATAAAAGTTGTCT	6562	False	NA	NA	False	NA	NA	NA	148824909	148822567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148822600_148824900
1187	chr8	+	6688	2	NNC	ENSMUSG00000052446.18	novel	2713	4	NA	NA	29	0	intron_retention	FALSE	non_canonical	0	0	junction_1	0	18	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72704963	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72717530
1188	chr3	+	5311	2	ISM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	19985	0	19961	0	3prime_fragment	FALSE	canonical	3	484	junction_1	0	118	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	16257360	16271201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_16259589_16268118
1189	chrX	+	4086	10	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	138	0	intron_retention	FALSE	canonical	3	3075	junction_3	311.270673367674	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473478	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
1190	chr13	+	4069	32	NIC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-6	-36	combination_of_known_splicesites	FALSE	canonical	0	0	junction_31	376.656132077291	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAATCAAAACAGTAAAC	NA	False	NA	NA	False	NA	NA	NA	49835599	49887707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49887134
1191	chr11	+	4035	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-9	-220	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	745.990277684636	1	103	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGACGCCAATCTCTGA	NA	False	NA	NA	False	NA	NA	NA	72332171	72342374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337864_72338034_72338127_72338378_72338466_72338576_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
1192	chr19	+	4912	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1091.93340456275	1	159	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1476	False	NA	NA	False	NA	NA	NA	44282521	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282785_44283402_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
1193	chr7	-	3464	20	NIC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-5	-7	intron_retention	FALSE	canonical	3	1924	junction_13	253.902570360083	220	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGACTTGGAGTTTC	NA	False	NA	NA	False	NA	NA	NA	126165588	126145633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126146253_126146356_126146520_126146606_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
1195	chr11	-	6636	23	FSM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	-64	0	12	0	multi-exon	FALSE	canonical	3	266	junction_5	36.2819537137853	282	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGACAAAGAATGACTGA	NA	False	NA	NA	False	NA	NA	NA	101442769	101379589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
1197	chr6	-	5414	19	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	20	2	intron_retention	FALSE	non_canonical	0	0	junction_1	131.766125117175	82	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGTGATTGGATCT	9418	False	NA	NA	False	NA	NA	NA	82751415	82702003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82703387_82703467_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
1198	chr5	-	3300	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	8	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTTACAGATCTGATG	NA	False	NA	NA	False	NA	NA	NA	135963451	135937280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939080_135939279_135940506_135963176
1199	chr9	-	6495	38	NNC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	-27	0	intron_retention	FALSE	non_canonical	0	0	junction_28	184.721696576952	2	149	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	20864168	20818504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843412_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851848_20852668_20852880_20852994_20853103_20853878_20853916_20864003
1200	chr2	-	5776	18	NNC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	-3	2	intron_retention	FALSE	canonical	0	0	junction_14	891.394708281105	28	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTTTCGTTTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	156022084	155989163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156017933_156019255_156019306_156020799_156020873_156021096_156021161_156021806
1201	chr4	+	3261	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-42	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	124.535545290557	1212	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576831	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597429_147597511_147598004_147598082_147598301_147599053
1202	chr7	+	4680	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	280.068366529595	2	75	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	7242	False	NA	NA	False	NA	NA	NA	109617524	109655816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109642035_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648798_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
1203	chrX	+	3792	10	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-34	-5	intron_retention	FALSE	canonical	3	3075	junction_4	308.634987575219	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473306	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
1204	chr8	-	2341	15	NIC	ENSMUSG00000058355.9	novel	3030	16	NA	NA	12	-1178	intron_retention	FALSE	canonical	3	1167	junction_8	91.2167468064894	7	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAATTACCACATTCTAT	NA	False	NA	NA	False	NA	NA	NA	80438267	80414012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
1205	chr8	-	1851	2	ISM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	25578	183	13251	-183	3prime_fragment	FALSE	canonical	3	1215	junction_1	0	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80412791	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_80411907_80412573
1206	chr4	+	1900	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	-71	-701	-71	701	mono-exon	FALSE	NA	NA	NA	NA	NA	4558	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103420527	103422427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_103420500_103422400
1208	chrX	+	3639	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	186.195889027951	8	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799471	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150816678_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
1210	chr19	-	3807	20	NIC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-16	-11	intron_retention	FALSE	canonical	3	1448	junction_14	347.691994431407	77	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTCCAGAGTACTGGCT	3897	False	NA	NA	False	NA	NA	NA	5345452	5323970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
1211	chr11	-	4867	6	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	45	-6	intron_retention	FALSE	canonical	3	3830	junction_3	197.984443833348	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTGAATTAAGTGAAATT	9726	False	NA	NA	False	NA	NA	NA	106679248	106672379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677901_106679098
1212	chr11	-	3686	25	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	980.756539049773	8	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100374576_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
1213	chr11	-	4066	27	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1047.15015058483	2	70	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375548_100383324_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407676_100410499_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
1216	chr7	+	2136	1	ISM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	12567	19	10218	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAGATTTGTGAAACCA	3	True	NA	NA	False	NA	NA	NA	44478078	44480214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44478100_44480200
1217	chr15	-	4305	12	NNC	ENSMUSG00000023022.15	novel	4243	11	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_11	312.650334087393	1051	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	7297	False	NA	NA	False	NA	NA	NA	99773278	99676350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99772463_99772585_99773213
1218	chr11	-	4444	4	NIC	ENSMUSG00000038615.18	novel	4654	5	NA	NA	28	7	intron_retention	FALSE	canonical	3	71	junction_1	306.275475130913	6	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTGCACTTTCTCCC	NA	False	NA	NA	False	NA	NA	NA	96720753	96708249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96711343_96712929_96713146_96718023_96719050_96720644
1219	chr13	-	4340	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	82	3	-6	-3	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	587	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAAAGTGTAAGCAGTG	NA	False	NA	NA	False	NA	NA	NA	96807362	96785477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
1220	chr15	-	4510	32	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	162	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATGCGCATGCGCACAC	NA	False	NA	NA	False	NA	NA	NA	12935332	12833636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12834746_12837365_12837460_12842140_12842254_12842385_12842617_12846152_12846293_12848135_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865183_12866646_12866729_12867679_12867753_12878738_12878913_12881707_12881834_12883251_12883350_12885071_12885179_12889701_12889811_12890117_12890257_12890570_12890632_12901186_12901246_12902667_12902769_12905682_12905785_12907406_12907480_12912595_12912642_12913984_12914143_12915424_12915529_12924138_12924284_12926076_12926158_12926289_12926396_12928948_12929040_12929748_12929804_12935082
1221	chr6	-	4848	27	FSM	ENSMUSG00000053470.14	ENSMUST00000065509.11	4816	27	-35	3	-35	-1	multi-exon	TRUE	canonical	3	176	junction_18	110.285703472991	640	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAGATAATCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71609924	71565958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
1223	chr5	-	3896	16	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	28973	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGTCTGGATCACATG	NA	False	NA	NA	False	NA	NA	NA	108256654	108225258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108226293_108228688_108228887_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452_108254790_108255548
1225	chr8	-	3273	18	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_15	464.870745141681	2502	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86026131	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021002_86021102_86021487_86021587_86026083
1226	chr4	-	3828	18	NNC	ENSMUSG00000028809.17	novel	3740	18	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	329.33757567931	1479	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACATTGCCACTCACAT	NA	False	NA	NA	False	NA	NA	NA	135080456	135047801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068366_135069527_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
1227	chr14	+	3907	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	-30	641	-30	-60	multi-exon	FALSE	canonical	3	890	junction_17	126.92017018583	1	63	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCATGTCTGGCAGTCG	1801	False	NA	NA	False	NA	NA	NA	121148605	121184770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
1228	chr1	+	3933	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	-60	0	-55	0	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	2296	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3087	False	NA	NA	False	NA	NA	NA	180396433	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
1229	chr10	-	1314	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	68	1050	3	-1048	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	1	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTACCAGCAGAGCGGGG	8813	False	NA	NA	False	NA	NA	NA	128401735	128394684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
1230	chr1	+	4531	31	NIC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	2	-13	combination_of_known_splicesites	FALSE	canonical	2	113	junction_17	557.258413026568	1	123	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTATTTTATCTATTT	NA	False	NA	NA	False	NA	NA	NA	185095242	185160544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
1231	chr17	+	4688	14	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-5	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	244.625181226179	996	32	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTATTTTTATCTTCG	NA	False	NA	NA	False	NA	NA	NA	32255392	32281817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32265204_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
1232	chr19	-	3875	2	NNC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	-4	True	NA	NA	False	NA	NA	NA	44396107	44382893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44386515_44395853
1233	chr1	+	3540	23	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	26	-252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	464.410147524757	143	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3173	False	NA	NA	False	NA	NA	NA	180396519	180428565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418835_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
1234	chr7	+	4560	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	283.2970289241	1	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAACCCTTTGTGTTGTGT	7233	False	NA	NA	False	NA	NA	NA	109617515	109655811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646255_109646311_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650724_109651930_109652125_109653206_109653324_109654223
1235	chr11	-	488	4	Antisense	novelGene_ENSMUSG00000069744.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGTCTGCAGCGATGG	NA	False	NA	NA	False	NA	NA	NA	97603357	97594691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_97594799_97597623_97597730_97601925_97602105_97603261
1236	chrX	+	3030	22	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	40	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	775.465837613832	32	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529176	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538069_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1238	chr5	-	5626	13	NIC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	-1	-17	intron_retention	FALSE	canonical	3	749	junction_9	48.9020421068714	57	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAATCTTGGCCCAAGTC	NA	False	NA	NA	False	NA	NA	NA	52347837	52307561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
1239	chrUn_JH584304v1	-	5777	4	Intergenic	novelGene_4672	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	671	junction_3	95.6114823415868	1	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACTACCATAGCT	NA	False	NA	NA	False	NA	NA	NA	59695	52677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_58836_59591
1240	chrX	+	4549	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	691	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTATTGGTTGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	84091884	84248654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
1241	chr11	-	3681	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	60	-2	at_least_one_novel_splicesite	FALSE	canonical	3	418	junction_14	996.986871241829	2327	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACATGTCTGCAGGTTTC	8196	False	NA	NA	False	NA	NA	NA	50216440	50185295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216355
1242	chr2	-	6878	35	FSM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-49	-1657	23	0	multi-exon	FALSE	canonical	0	0	junction_19	111.726541471596	300	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATCTCCTTGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	60213624	60122446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_60124283_60129390_60129559_60131298_60131422_60133921_60134072_60136673_60136843_60138482_60138710_60141952_60142148_60144500_60144618_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163305_60164793_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
1243	chr18	+	3612	16	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	40	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	317.736676440658	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35695311	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695346_35704895_35705575_35705704_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
1244	chr4	-	6791	15	FSM	ENSMUSG00000028382.16	ENSMUST00000174586.8	6640	15	19	-170	8	-10	multi-exon	FALSE	canonical	3	35	junction_14	45.4889535817124	337	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTCTTAAGGTTTTTCTG	13	True	NA	NA	False	NA	NA	NA	59549276	59471877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59546148_59546183_59549147
1245	chr11	+	4199	25	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	24	-218	intron_retention	FALSE	non_canonical	0	0	junction_4	564.819163538207	3	113	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332226	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333568_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451
1246	chrX	-	4537	11	NNC	ENSMUSG00000031232.18	novel	1608	11	NA	NA	-51	-3	intron_retention	FALSE	canonical	0	0	junction_10	89.3653176573552	2	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACATGGTTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	105055443	105011692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105044576_105044655_105055267
1247	chr3	+	4498	8	NIC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-12	-9	intron_retention	FALSE	canonical	1	4	junction_3	349.519203291304	1220	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGCTTAACTGTATTT	NA	False	NA	NA	False	NA	NA	NA	102965651	102975213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102965757_102966220_102966349_102967254_102967351_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
1249	chr6	-	2503	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-148	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.44491542262	36	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGGATTTGAATCTTAA	8337	False	NA	NA	False	NA	NA	NA	145022058	144944879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945086_144945290_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
1251	chr15	-	4389	14	NNC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	0	55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	204.775905803474	25	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTATATTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	38519510	38488426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38510352_38510467_38514716_38514854_38519152
1253	chr10	+	5828	33	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	43	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	61.5029772526298	209	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTCCATTGGATGCTTA	NA	False	NA	NA	False	NA	NA	NA	83379847	83432347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430031
1255	chr14	-	434	4	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGGGGAGCGGGCGGAA	NA	False	NA	NA	False	NA	NA	NA	76085682	76082793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082896_76083055_76083129_76083640_76083822_76085604
1256	chr18	+	3180	17	ISM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	51	1356	-3	-296	5prime_fragment	FALSE	canonical	3	1584	junction_14	150.271200147433	2	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGCAAGTATTTTCAG	NA	False	NA	NA	False	NA	NA	NA	35251962	35386476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668
1257	chr12	-	2445	10	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	4361.55819364401	25	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660667_110661567_110661853_110661952_110662115_110662685
1259	chr17	-	2486	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	126	-6	intron_retention	FALSE	canonical	3	106	junction_10	3266.17492642387	9	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45883355	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45883278
1260	chr7	+	4265	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	-11	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	284.132301807724	2	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGATCTGATTGCAAT	7187	False	NA	NA	False	NA	NA	NA	109617469	109655327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630978_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646037_109646203_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
1261	chr17	+	4992	10	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-5	3	intron_retention	FALSE	non_canonical	0	0	junction_6	752.144703046553	8	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460775	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35470615_35470828_35471833_35471939_35472085_35472182_35472331_35472448
1262	chr15	-	4508	12	NIC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	0	296	combination_of_known_junctions	FALSE	canonical	2	46	junction_7	133.945283018758	866	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCATCCTCAGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	38519510	38488185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497795_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
1264	chr5	-	3619	8	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	-26	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	605.571512823099	8	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTATGTCCCTAA	NA	False	NA	NA	False	NA	NA	NA	92231543	92200021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205854_92216261_92216358_92218215_92218298_92221018_92221138_92231387
1265	chr19	+	4212	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	248	-1	-12	1	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	1	111	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTTATTGGTCTCTGCT	618	False	NA	NA	False	NA	NA	NA	10582938	10607184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
1266	chr12	-	3093	5	NNC	ENSMUSG00000069755.6	novel	928	6	NA	NA	342	380	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3.24037034920393	10	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCAATAAGTAGTGATTG	NA	False	NA	NA	False	NA	NA	NA	20970921	20948194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_20950936_20952270_20952332_20952533_20952661_20964759_20964845_20970842
1267	chr18	-	2498	11	NIC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	24	-2164	intron_retention	FALSE	canonical	3	6028	junction_6	228.028528916888	17	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGACAGTTCACTTTG	223	False	NA	NA	False	NA	NA	NA	35087386	35073912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
1268	chr19	+	4026	23	ISM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	3856	10	3838	-10	3prime_fragment	FALSE	canonical	3	708	junction_4	140.521409503768	41	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATAATTGGATGTCT	5755	False	NA	NA	False	NA	NA	NA	8879326	8894026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
1270	chr8	+	4148	17	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	7	junction_16	252.899923079763	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5016	False	NA	NA	False	NA	NA	NA	107329949	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395514_107395828
1272	chr16	-	4879	33	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8925	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	256.347479553511	3	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATTATAATCCGATG	NA	False	NA	NA	False	NA	NA	NA	8601247	8507476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8533612_8533784_8534378_8534484_8574679_8574937_8601193
1273	chr14	-	1920	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	9	546	9	-544	multi-exon	FALSE	canonical	3	610	junction_1	26.6868413267663	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTCCTGCAGCCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	40688755	40628947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
1275	chr6	-	3901	6	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	761	junction_1	31.4350123270216	330	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTGTCTATTACTTG	NA	False	NA	NA	False	NA	NA	NA	72416541	72409782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
1276	chr4	+	2183	5	Antisense	novelGene_ENSMUSG00000040025.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGACGCTCTAGGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	131913929	131939420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_131914258_131931441_131932051_131932092_131933029_131938063_131938145_131939191
1277	chr11	-	2434	15	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	8	-5710	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	175.880713866541	67	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAAACTTATTTTGATC	NA	False	NA	NA	False	NA	NA	NA	40624235	40597931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40598277_40598391_40598545_40598841_40598992_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
1279	chr1	-	1367	10	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	3009	5775	2578	1	3prime_fragment	FALSE	canonical	3	5903	junction_8	889.850271772077	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTTAATACTTCCTA	NA	False	NA	37	True	NA	NA	NA	86284113	86278215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092
1281	chr11	-	3423	9	NIC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	18	intron_retention	FALSE	canonical	3	16996	junction_5	1716.10350339803	91	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTAACTCTCATACTTTG	NA	False	NA	NA	False	NA	NA	NA	33113075	33102491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33102853_33103985_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33111226_33111547_33111628_33112921
1282	chrX	+	3387	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	86	448	at_least_one_novel_splicesite	FALSE	canonical	1	17	junction_1	688.056888345724	1	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGTACCTTGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	20524745	20548892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524816_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1283	chr7	+	3582	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	-3	248	-1	-248	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	266	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103867998	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
1284	chr8	-	3427	17	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-4	-174	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	330.951067946607	205	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGTGTGTGGTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	80438283	80410264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414578_80415926_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
1285	chr11	-	5497	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	296	10	-39	-9	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	1250	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAACTAGATCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	74615200	74564784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
1286	chrX	+	3424	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	145	475	50	-475	multi-exon	FALSE	canonical	3	1167	junction_1	494.469940036804	1	78	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524709	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1287	chr12	-	3137	8	NIC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-146	intron_retention	FALSE	canonical	3	11114	junction_4	1637.25290081419	1520	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCCCCAAGTGGCTTGT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110658084_110658547_110659602_110659745_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1288	chr6	+	4187	6	FSM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	-324	-887	-45	-4	multi-exon	FALSE	canonical	3	1209	junction_4	60.7466871524695	189	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTGGCTTTGTCGTTTG	2619	False	NA	NA	False	NA	NA	NA	122285633	122294635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122292126_122292262_122292394_122293008_122293136_122293286
1289	chr5	-	4957	25	FSM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	-14	-244	-14	242	multi-exon	TRUE	canonical	3	281	junction_12	79.0184138174275	835	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACGTTTTAAAATAATA	9	False	NA	NA	False	NA	NA	NA	65492978	65418950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
1290	chr15	-	3879	15	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	424.137353811191	591	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGCTATGATCTTCT	NA	False	NA	NA	False	NA	NA	NA	96953839	96892705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906716_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
1292	chr2	-	2074	17	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	-17	36	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_8	451.433273031574	4	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACGAGGTAATATATTGT	NA	False	NA	NA	False	NA	NA	NA	103627335	103598758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605844_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
1293	chr5	-	3478	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	8	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	10	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATCTGATGTCGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	135963462	135937271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938254_135938295_135940506_135963176
1295	chr15	-	4192	11	FSM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	51	0	11	0	multi-exon	FALSE	canonical	3	692	junction_4	128.449367456597	1059	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	7289	False	NA	NA	False	NA	NA	NA	99773286	99676350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
1296	chrX	-	3867	9	NNC	ENSMUSG00000016534.16	novel	3604	9	NA	NA	-23652	-5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	328.166783053983	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGGAAATTTGCTCACA	NA	False	NA	NA	False	NA	NA	NA	37568983	37508388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37568509
1297	chr19	+	4212	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-42	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	1056.42855411089	1	109	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCTTATTGGTCTCTG	588	False	NA	NA	False	NA	NA	NA	10582908	10607182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10600989_10602087_10602212_10602530_10602690_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605206_10605773_10605913_10606442
1298	chr15	+	4505	35	FSM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	-31	45	17	-44	multi-exon	FALSE	canonical	3	495	junction_3	95.4793814587056	32	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGGTTGTTGTCTTAATG	22	False	NA	NA	False	NA	NA	NA	12824917	12935332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
1299	chr17	+	564	1	ISM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	44794	27	5708	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGCGAAACAATGCAACTT	NA	False	NA	NA	False	NA	NA	NA	29924362	29924926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29924400_29924900
1300	chr14	+	6414	16	NNC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	51.2269026543237	4	100	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAAATAAAGTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	21531501	21722512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712443_21718832
1301	chr11	-	3707	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	25	-11	at_least_one_novel_splicesite	FALSE	canonical	3	418	junction_14	996.986871241829	237	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAATGAATACATGTCT	8161	False	NA	NA	False	NA	NA	NA	50216475	50185304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216355
1302	chr18	-	3278	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	-249	20	-249	-20	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	4856	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTACTGGCATAAACAAA	NA	False	NA	NA	False	NA	NA	NA	35087659	35070486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
1304	chr2	+	3490	29	NIC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	23	0	intron_retention	FALSE	canonical	3	956	junction_8	74.4649623127877	1932	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146854938	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_146855117_146866427_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
1305	chr19	+	3224	17	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-20107	-625	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGGCGCGAGACCAACA	NA	False	NA	NA	False	NA	NA	NA	5325116	5345431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5325192_5329296_5329401_5329499_5329978_5333670_5333781_5333887_5334755_5336218_5336445_5336604_5336685_5336837_5336977_5337096_5337315_5337562_5337655_5337937_5338035_5338331_5338444_5341333_5341451_5343105_5343348_5344326_5344405_5345068_5345115_5345288
1306	chr11	+	3238	22	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	2	-218	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	804.65186060808	4	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332184	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333435_72335696_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339660_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
1307	chr11	-	4788	21	NIC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-17	977	intron_retention	FALSE	canonical	3	682	junction_20	134.914889838001	17	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCCTTCTGTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	97078724	97052358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97053508_97054178_97054341_97054739_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
1308	chr4	+	2434	9	Intergenic	novelGene_2122	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	55	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACCTTTTCCCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	146912398	147025970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146912545_146912823_146913217_146914140_146914404_146976195_146976633_146976962_146977116_146978205_146978335_146982170_146982228_147021699_147022457_147025871
1309	chr4	-	2851	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	2624	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	111.895040104555	3	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147891621	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147852107_147852390_147891546
1310	chr19	+	3938	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	506	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1372.82523280368	1	82	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAACTCTTATTGGTCT	1891	False	NA	NA	False	NA	NA	NA	10584211	10607179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10584358_10585156_10585274_10585614_10585837_10587155_10587192_10588065_10588181_10589007_10589106_10590236_10590311_10591471_10591556_10592212_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10600989_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606456
1314	chr6	-	3339	8	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	6	-1	intron_retention	FALSE	canonical	0	0	junction_2	2574.78947821814	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTGGTGTAATGCTTA	NA	False	NA	NA	False	NA	NA	NA	51446819	51438101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440474_51441068_51441215_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
1316	chr7	-	4089	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	-12	-4	-12	4	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	32	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATTAGTAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	42516670	42466248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
1317	chr14	+	4463	3	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	81	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	122.5	3	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGGTTTCTTTGTGTA	9711	False	NA	NA	False	NA	NA	NA	47535806	47560549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47547844_47548571_47556868
1318	chr17	-	4127	10	NIC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	0	483	intron_retention	FALSE	canonical	3	465	junction_7	57.3875712444196	220	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATACTAAGAAAAGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	79244495	79229124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
1319	chr1	-	6784	23	FSM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	-1	1243	-1	-1243	multi-exon	TRUE	canonical	3	89	junction_2	12.3013135091171	339	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCGCTGTACGTCACCTC	NA	False	NA	NA	False	NA	NA	NA	131455086	131214231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_131217479_131220258_131220584_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
1320	chr10	+	1801	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	184	1125	6	-117	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	32	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCAGAAAAGCCACTTTAA	1567	False	NA	NA	False	NA	NA	NA	79690444	79699141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
1321	chr4	+	5650	27	NIC	ENSMUSG00000043411.16	novel	5741	27	NA	NA	-5	-4	intron_retention	FALSE	canonical	3	659	junction_9	223.123509724359	780	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGACCTTTATCCGGAGTG	586	False	NA	NA	False	NA	NA	NA	137321533	137385837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
1322	chr8	+	3462	19	Intergenic	novelGene_1673	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGTGCACAGCCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	80410273	80438273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_80410461_80410514_80411906_80412572_80412686_80414069_80414193_80414292_80414432_80414519_80414634_80415752_80415811_80415933_80415993_80416860_80417090_80420054_80420175_80425975_80426066_80427214_80427312_80427541_80427614_80427745_80427881_80428401_80428519_80429630_80429733_80433864_80433948_80435050_80435182_80438171
1324	chr15	-	3541	14	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	55	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	439.204727774427	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGATGTGGCTATGATC	NA	False	NA	NA	False	NA	NA	NA	96953782	96892709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906892_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
1325	chr4	-	2839	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-10	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	100.146692406689	1	34	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	9513	False	NA	NA	False	NA	NA	NA	147894255	147838432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845774_147860154_147860286_147891546_147891641_147894124
1326	chr13	+	4081	33	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	30	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	454.36432995553	4	69	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGATACTGTGTTGGAAGT	NA	False	NA	NA	False	NA	NA	NA	49835696	49887733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885028_49887290
1328	chr12	-	2674	10	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	30	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5591.46095001615	4	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGAAGTGTGGAATG	NA	False	NA	NA	False	NA	NA	NA	110662076	110657471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659033_110659307_110659453_110659602_110659741_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952
1329	chr9	+	2395	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	3928	junction_2	6450.55656513452	80	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2456	False	NA	NA	False	NA	NA	NA	40712568	40716496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_40712645_40713213_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
1330	chr11	-	3642	9	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	-1004	-3	intron_retention	FALSE	canonical	3	3830	junction_5	159.131235148854	2	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	NA	False	NA	NA	False	NA	NA	NA	106677880	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734
1331	chr13	-	5353	7	NIC	ENSMUSG00000041431.17	novel	2140	8	NA	NA	-13	404	intron_retention	FALSE	canonical	3	3352	junction_4	264.617176313254	6	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTAAAAAGAATTTGCCC	NA	False	NA	NA	False	NA	NA	NA	100923007	100915712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100922127_100922240_100922412_100922889
1332	chr17	-	4474	7	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	-375	1803	intron_retention	FALSE	canonical	3	13	junction_4	77.3665517735755	37	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAATCACAAACTGTAATA	NA	False	NA	NA	False	NA	NA	NA	37300804	37278283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732_37281958_37298307_37298416_37298546_37298823_37299396
1333	chr12	-	1057	1	NIC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	1094	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGGAATGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	110658520	110657463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110657500_110658500
1334	chr5	+	4163	16	NIC	ENSMUSG00000029267.18	novel	3068	16	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	740.882254852656	1	105	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTAATGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108213581	108256869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
1335	chr13	-	4124	21	NNC	ENSMUSG00000021670.15	novel	4425	20	NA	NA	10	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	108.34956160502	3	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAAGCAGTGGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	96807373	96785469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_96785657_96785891_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
1336	chr11	-	6733	29	FSM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	7	0	7	0	multi-exon	FALSE	canonical	2	202	junction_15	57.5883527056204	592	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	NA	False	NA	NA	NA	69649456	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
1338	chr10	+	3886	8	NIC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-8	-150	intron_retention	FALSE	canonical	3	1420	junction_6	105.768518907266	4	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGTGTTTGTATGGAA	NA	False	NA	NA	False	NA	NA	NA	128173670	128198198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128196023_128196836
1340	chr7	+	4993	3	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	-12	intron_retention	FALSE	canonical	3	709	junction_1	5.5	15	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTCATTGCCCTCTGTAG	NA	False	NA	NA	False	NA	NA	NA	43896210	43901724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43899484_43899732_43899765_43900036
1341	chr2	+	3560	28	NIC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	51	-5	intron_retention	FALSE	canonical	3	956	junction_9	75.5117156763742	1365	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGTTGGTGTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	146854966	146919915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
1342	chr10	-	3198	8	FSM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	0	6	0	-6	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	2829	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAGAAAGTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	40178182	40163459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
1346	chr9	-	5544	29	NNC	ENSMUSG00000035941.16	novel	5650	29	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	55.0714169909197	200	51	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTAGCGTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	85631362	85569412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604503_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626035_85631183
1348	chr7	-	4179	5	NNC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.3752845215117	11	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAATTTTCATTAGTAAT	NA	False	NA	NA	False	NA	NA	NA	42516658	42466254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42470028_42470178_42470287_42471782_42471844_42472041_42472168_42516547
1349	chr7	+	4091	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	-6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	243.487932481035	3	29	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCTTGATCTGATTGC	7233	False	NA	NA	False	NA	NA	NA	109617515	109655324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630861_109636182_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
1350	chr1	+	4098	31	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	213.29915351189	4	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3040	False	NA	NA	False	NA	NA	NA	171910371	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942367_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
1351	chr13	-	4345	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	67	13	6	-13	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	4	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGTTAACATTGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	96807377	96785487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
1352	chr4	+	2914	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4914	182330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.333151382607	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147395044	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409276_147409335_147413438_147413566_147415724_147416839_147599008
1355	chr1	-	4187	13	NIC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	9	20	intron_retention	FALSE	canonical	3	1956	junction_5	147.995190424854	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	181669917	181642879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
1356	chr18	-	5848	27	NNC	ENSMUSG00000006740.15	novel	6032	26	NA	NA	-4	-20	intron_retention	FALSE	non_canonical	0	0	junction_1	281.066818057589	445	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGACACATTTGAACCTTA	-9	True	NA	NA	False	NA	NA	NA	6241527	6201021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6202204_6202371_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
1357	chrX	+	3239	24	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	931.686356516352	2	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20529169	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20542021_20544817_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548418_20548686
1358	chr11	-	3291	12	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	3	107	junction_1	1173.36496404272	3	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9657	False	NA	NA	False	NA	NA	NA	106679317	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106673083_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
1359	chr15	-	4601	35	NIC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-20	0	intron_retention	FALSE	canonical	3	484	junction_23	48.0496157209842	2	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTCAGACGAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76491731	76480016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
1361	chr13	-	4478	20	NIC	ENSMUSG00000021670.15	novel	4425	20	NA	NA	-144	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_19	109.467079760294	756	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTGTAAGCAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	96807134	96785474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96806955
1362	chr17	+	4115	16	Antisense	novelGene_ENSMUSG00000004865.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGACTCGGGCTCCCGCCG	4833	False	NA	NA	False	NA	NA	NA	28806629	28841428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_28808312_28808375_28809218_28810176_28810268_28811191_28811261_28813142_28813256_28817877_28817976_28818443_28818844_28819842_28819869_28821661_28821826_28822409_28822514_28824267_28824363_28825281_28825368_28826056_28826166_28827618_28827738_28840949_28841012_28841373
1364	chr5	-	3759	16	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23877	45628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	89	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256519	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108221172_108221319_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
1366	chrX	+	4468	17	NNC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	84.9444671535469	2	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGCAGTTATGTTACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84091899	84248633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153662_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
1367	chr17	-	2195	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	1	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	53	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884199	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878876_45879307_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
1368	chrX	+	3457	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-16	-479	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	691.063065139499	1	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGATGTAGCCATCCTGG	NA	False	NA	NA	False	NA	NA	NA	20524643	20548939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524737_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1369	chr12	-	2676	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-12	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5384.92629847429	13	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATAAAAAGAAGTGTGGA	NA	False	NA	NA	False	NA	NA	NA	110662735	110657474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659749_110659937_110660144_110660311_110660527_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1370	chr6	-	3898	24	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	6	0	intron_retention	FALSE	non_canonical	0	0	junction_23	141.223414949706	46	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	241	False	NA	NA	False	NA	NA	NA	29609600	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364_29609470_29609536
1371	chr1	+	631	4	ISM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-33	10896	-33	-10896	5prime_fragment	FALSE	canonical	3	1526	junction_2	170.069266934257	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTCTCAAAAAAAAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	4928003	4957232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966
1372	chr1	+	1362	1	Intergenic	novelGene_327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGAAGAACTGACTATA	NA	False	NA	NA	False	NA	NA	NA	4957315	4958677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_4957300_4958700
1373	chr6	-	5333	22	NIC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-13	0	intron_retention	FALSE	canonical	3	521	junction_16	53.2242506915598	4	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	10	True	NA	NA	False	NA	NA	NA	29609831	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
1374	chr10	-	4390	14	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	81	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	186.800814716366	1	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTTAGTTCTTGGTGGC	NA	False	NA	-74	True	NA	NA	NA	62437979	62416033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429830_62434091_62434671_62437906
1375	chr8	-	4354	24	FSM	ENSMUSG00000031835.17	ENSMUST00000098362.11	4336	24	-22	4	-14	-4	multi-exon	FALSE	canonical	3	10	junction_23	140.895341173728	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTACAAAGCTGGCATGTG	8127	False	NA	NA	False	NA	NA	NA	120285488	120234898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120276296_120276446_120285384
1376	chrX	-	2659	10	NIC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	-10	141	intron_retention	FALSE	canonical	3	815	junction_3	59.8388783152282	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAGAACCAAAAGGTCT	NA	False	NA	NA	False	NA	NA	NA	95000502	94984155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
1377	chr11	+	4889	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	5	26	0	-26	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	1406	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTATAAATTACTTTG	NA	False	NA	NA	False	NA	NA	NA	4110354	4132515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
1378	chr14	-	3225	8	NIC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-3	4	intron_retention	FALSE	canonical	3	4955	junction_4	391.517143263724	50	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTATTGCTGTACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	36857214	36842776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36853607_36855127_36855228_36855589_36855761_36857151
1379	chr18	-	3787	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	-12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	518.488668612641	3	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGGCCATGTTATTTA	NA	False	NA	NA	False	NA	NA	NA	42395168	42335413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369649_42369694_42369821_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
1380	chr8	+	3890	17	NNC	ENSMUSG00000000303.13	novel	3203	17	NA	NA	-32	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	254.482563253359	4	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5017	False	NA	NA	False	NA	NA	NA	107329950	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395307_107395869
1381	chr15	+	5564	5	Antisense	novelGene_ENSMUSG00000115206.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGACCACGTGAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	4011520	4025224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_4015961_4018071_4018188_4019036_4019169_4021199_4021949_4025097
1383	chrX	-	4396	12	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	46.8701388663973	174	94	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGAAGATTGGAAAGGT	NA	False	NA	NA	False	NA	NA	NA	49724135	49651998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49656416_49656571_49658153_49659234_49661891_49662022_49662100_49662229_49666158_49666397_49666747_49666902_49709551_49709682_49715313_49715387_49716083_49716128_49719767_49719873_49723821
1384	chr8	-	5976	14	NNC	ENSMUSG00000031523.17	novel	6159	14	NA	NA	1198	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	10.091885544642	4	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATTGAATTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	37079830	37034898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_37037558_37038418_37038593_37039821_37040040_37041108_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694_37052122_37053833_37053894_37060530_37060613_37066522_37066595_37079630
1385	chr7	+	4183	8	NIC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	8	-248	intron_retention	FALSE	canonical	2	115	junction_1	215.402423574185	237	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868051	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
1386	chr12	-	918	2	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	3875	5	766	-5	3prime_fragment	FALSE	canonical	3	16426	junction_1	0	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTGTGGAATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	110658848	110657466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110658084_110658547
1388	chr6	-	4406	31	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-16	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_23	159.069114957409	39	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3590	False	NA	NA	False	NA	NA	NA	125168469	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125161175_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168356
1391	chr17	+	515	4	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGAGAGCTCCCGAACGC	NA	False	NA	NA	False	NA	NA	NA	45878847	45884185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879186_45882649_45882838_45884092
1392	chrX	+	4452	18	NNC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	83.1706046687702	661	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTATTGGTTGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	84091922	84248654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076_84246785_84246843
1393	chrX	+	3062	24	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	748.039135476319	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547693_20548766
1394	chr14	+	4649	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	3	-110	3	1	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	1011	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCTGTTTGCATGTGACC	9633	False	NA	NA	False	NA	NA	NA	47535728	47560662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
1396	chr14	-	4071	17	FSM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	2	-4	2	4	multi-exon	TRUE	canonical	2	379	junction_16	73.5790391347971	1101	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGAAAGACTTATTTCTG	6548	False	NA	NA	False	NA	NA	NA	61677321	61602655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
1397	chr1	+	3387	13	NNC	ENSMUSG00000047369.18	novel	1999	2	NA	NA	1857	26589	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	145	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGGCCGCGCTCTCGCGC	NA	False	NA	NA	False	NA	NA	NA	181642879	181669928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_181644573_181645046_181645135_181646404_181646573_181647427_181647553_181648236_181648342_181648999_181649192_181653185_181653240_181656274_181656477_181659109_181659299_181659712_181659798_181663622_181663854_181665942_181666122_181669852
1399	chr4	+	3199	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	7	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	134.040313173148	9	101	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576880	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577068_147578827_147578927_147592042_147592098_147595209_147595337_147596801_147598217_147599053_147599868_147600019
1400	chr11	-	6077	32	FSM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	72	370	8	-66	multi-exon	FALSE	canonical	3	813	junction_25	122.673691341487	1	143	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCAGTTTTGTTTGTGGA	NA	False	NA	NA	False	NA	NA	NA	86648319	86585546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
1401	chr17	-	4360	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	1312	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCTTGGTTCCACAAG	NA	False	NA	NA	False	NA	NA	NA	28841461	28806627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808346_28808410_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
1402	chr16	+	5012	10	FSM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	-25	0	-25	0	multi-exon	FALSE	canonical	3	317	junction_1	99.7045016753055	547	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	84631986	84660667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
1403	chr8	+	3978	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_14	261.086192664415	2	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392115_107395286
1404	chr10	-	2172	7	Antisense	novelGene_ENSMUSG00000005683.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGGGGTTCTTCTCCACC	NA	False	NA	NA	False	NA	NA	NA	128198123	128188622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128188675_128188889_128189079_128194200_128194401_128195036_128195167_128195300_128195403_128195810_128196021_128196834
1405	chr15	+	2536	12	NIC	ENSMUSG00000078932.9	novel	2041	13	NA	NA	43	715	combination_of_known_splicesites	FALSE	canonical	2	5	junction_5	8.52221210564216	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTATTTCTCTTGATA	NA	False	NA	NA	False	NA	NA	NA	91083739	91145812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
1406	chr19	+	3316	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1488	False	NA	NA	False	NA	NA	NA	44282533	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291550_44293267
1408	chr13	+	3289	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	2	1546	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.499606986225	37	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTTCTGTTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	62277748	62322779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62319396_62319647_62321980_62322536
1409	chr8	+	3464	18	Intergenic	novelGene_1674	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	223	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCATAGTGCGCGTGCG	NA	False	NA	NA	False	NA	NA	NA	80410283	80438306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_80411906_80412572_80412686_80414069_80414193_80414292_80414432_80414519_80414634_80415752_80415811_80415933_80415993_80416860_80417010_80420048_80420175_80425975_80426066_80427214_80427312_80427541_80427614_80427745_80427881_80428401_80428519_80429630_80429733_80433864_80433948_80435050_80435184_80438174
1410	chr18	+	3812	19	NIC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	558.933157623841	12	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251965	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35252035_35271037_35271175_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
1411	chr2	-	4981	23	NIC	ENSMUSG00000039671.19	novel	5093	23	NA	NA	64	-2	combination_of_known_junctions	FALSE	canonical	3	8	junction_11	188.171277702167	71	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGATGGCGTTTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	165740872	165626076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165654268_165654779_165657236_165657390_165662461_165662609_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
1412	chr6	+	5615	29	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	1	-36	intron_retention	FALSE	canonical	3	253	junction_1	40.3573798981661	22	45	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTATGCTTAAAATTACAAA	NA	False	NA	NA	False	NA	NA	NA	116185017	116239590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116233790_116235602_116236218_116237451_116237630_116239295
1413	chr6	-	4541	32	NIC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_31	121.390529984967	348	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3587	False	NA	NA	False	NA	NA	NA	125168472	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168356
1414	chr18	+	4357	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	-37	-1997	2	240	multi-exon	FALSE	canonical	3	816	junction_9	364.192494210831	1497	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTTTATTGTAACTCAAC	430	False	NA	NA	False	NA	NA	NA	61688346	61723372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
1415	chr13	-	1611	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	-102	-167	-102	167	mono-exon	FALSE	NA	NA	NA	NA	NA	5324	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTATACATAGCATATTT	NA	False	NA	NA	False	NA	NA	NA	112731720	112730109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112730100_112731700
1416	chr13	+	5925	18	FSM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	67	5	-30	-2	multi-exon	FALSE	canonical	3	632	junction_5	80.8182205637225	544	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTCTGTCTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	44884813	45075114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
1417	chrX	+	4788	29	NIC	ENSMUSG00000000037.18	novel	1257	12	NA	NA	-24	3	combination_of_known_splicesites	TRUE	canonical	3	8	junction_16	115.10673839741	245	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGCAATTAACAGCTAAG	154	False	NA	NA	False	NA	NA	NA	159865496	160041195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_159865683_159869958_159870037_159878108_159878187_159904019_159904098_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
1418	chr4	+	3443	3	FSM	ENSMUSG00000063524.14	ENSMUST00000130632.8	1878	3	0	-1565	0	3	multi-exon	FALSE	canonical	3	15633	junction_2	329.5	8	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCGTGGAAAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	150321696	150328749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_150321798_150323929_150324024_150325501
1421	chr5	+	6748	3	Antisense	novelGene_ENSMUSG00000046572.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	320	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCGCGCCCGCTGTAGG	NA	False	NA	NA	False	NA	NA	NA	38825828	38842103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_38832197_38839827_38840125_38842020
1422	chr5	-	4566	24	NIC	ENSMUSG00000029191.17	novel	4751	25	NA	NA	-24	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	139.073520967884	21	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGCGTACTGAGTCTTG	-1	True	NA	NA	False	NA	NA	NA	65492988	65419199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
1423	chrX	+	7276	38	NNC	ENSMUSG00000031314.19	novel	5954	39	NA	NA	-15	-16	intron_retention	FALSE	non_canonical	0	0	junction_34	64.9298323297513	9	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAACAGCAATAGAATCGA	4075	False	NA	NA	False	NA	NA	NA	100576324	100644624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584365_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637541_100637672_100638905_100639063_100639693_100639872_100642914
1424	chr12	-	2770	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	86	425	-20	-2	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	1	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGGAATGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1425	chr9	-	4435	4	ISM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	13	1	13	-1	intron_retention	FALSE	canonical	3	3873	junction_3	461.363197491954	309	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTAGTGCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	110775213	110768671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219
1426	chr2	+	3614	32	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	41	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	329.607473168262	268	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCTGGTGTCTGATT	NA	False	NA	NA	False	NA	NA	NA	146854956	146919922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146894580_146894700_146901350_146901451_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
1427	chrX	-	3371	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	5	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	433	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAAGCATTAATTGTGC	NA	False	NA	NA	False	NA	NA	NA	93256252	93232322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233419_93233621_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
1429	chr3	+	4222	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	91	5	-90	-5	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	1	94	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTAGCACCTAGCGCTTTC	NA	False	NA	NA	False	NA	NA	NA	102927832	102965497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
1430	chr2	-	4989	19	NNC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.2040652404741	4	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84481068	84431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84431187_84431538_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
1431	chr8	+	4001	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-13	1	intron_retention	FALSE	non_canonical	0	0	junction_12	267.35466202429	5	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGCTCACTTGATTTGA	5064	False	NA	NA	False	NA	NA	NA	107329997	107396879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390454_107392062_107392157_107392818_107392963_107395037
1432	chr3	-	4088	26	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_12	212.133542845067	3	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTTATGTGTCCTGT	1904	False	NA	NA	False	NA	NA	NA	27207933	27151373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27188380_27188449_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
1433	chr1	+	3091	17	NIC	ENSMUSG00000104217.2	novel	825	10	NA	NA	-44	11137	combination_of_known_splicesites	FALSE	canonical	2	4	junction_8	600.086400029196	58	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATGTTTTTTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	4878070	4968130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
1434	chr2	-	4481	20	NIC	ENSMUSG00000039671.19	novel	6188	24	NA	NA	31	1	combination_of_known_splicesites	FALSE	canonical	3	58	junction_8	171.572408658101	426	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	165726640	165626073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726527
1435	chrX	+	3610	24	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	187.098540598637	47	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799471	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810779_150811958_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
1436	chr6	-	3254	11	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	0	intron_retention	FALSE	canonical	1	62	junction_4	2175.24945925749	46	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441432_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
1437	chr19	+	3897	25	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	13	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1085.56315070413	1	77	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAACTCTTATTGGTCT	643	False	NA	NA	False	NA	NA	NA	10582963	10607179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599343_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602700_10603973_10604127_10604489_10604600_10605125_10605229_10605788_10605913_10606442
1438	chr15	-	6484	42	NNC	ENSMUSG00000022443.18	novel	7433	41	NA	NA	23	-756	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	102.246817357443	1	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTCTCAAGTGCAATG	NA	False	NA	NA	False	NA	NA	NA	77726224	77645542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651412_77651453_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
1439	chr15	-	4520	36	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-17	0	intron_retention	FALSE	canonical	0	0	junction_34	106.375714583082	17	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACGAGTGTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	76491728	76480010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487844_76487923_76487952_76491534
1440	chrX	+	5152	16	NNC	ENSMUSG00000025246.14	novel	5234	16	NA	NA	-1569	0	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_1	120.425283428726	629	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACATAGTGACTGTGTT	NA	False	NA	NA	False	NA	NA	NA	76553049	76706589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_76553225_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
1441	chr8	-	801	1	ISM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	50920	422	17290	-422	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACAATATATGTTGAAA	NA	False	NA	NA	False	NA	NA	NA	124625084	124624283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_124624300_124625100
1442	chr12	-	2646	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	4153.52792815939	4	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGATAAAAAGAAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	110662743	110657475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660732_110661070_110661139_110661485_110661853_110661952_110662115_110662685
1443	chr14	+	5309	3	Intergenic	novelGene_563	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	236	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTAACTTGAACACAACC	NA	False	NA	NA	False	NA	NA	NA	49839815	49846698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_49840098_49840213_49843317_49844774
1444	chrX	+	3306	25	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	37	-483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	941.085893913102	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCAGATGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	20529173	20548935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538376_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544463_20545627_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1445	chrX	-	3220	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	110	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256257	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233810_93234175_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
1446	chr3	+	4051	21	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	5	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5563.35189858596	1	64	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGACACTAGCACCTAGCG	NA	False	NA	NA	False	NA	NA	NA	102927940	102965492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936286_102936341_102936529_102946005_102946207_102947248_102947359_102947756_102947850_102948460_102948554_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954499_102956939_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
1447	chr18	+	4291	11	NNC	ENSMUSG00000024423.7	novel	687	8	NA	NA	-776	0	intron_retention	FALSE	non_canonical	0	0	junction_1	247.681266954124	40	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13106578	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13107157_13107369_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
1448	chr3	+	4369	6	FSM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	-28	-3510	-9	3	multi-exon	FALSE	canonical	3	47	junction_5	301.169453962383	176	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965654	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971549
1449	chr16	-	5708	30	FSM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	94	9	24	-6	multi-exon	FALSE	canonical	3	160	junction_25	98.9917903368873	451	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTAAAGCTCTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	20245050	20150061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
1450	chr17	-	4320	16	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	27	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	190.043316699699	4	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGGTTCCACAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	28841398	28806623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808433_28808851_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
1452	chr5	-	3518	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	2	0	0	0	multi-exon	FALSE	canonical	3	925	junction_1	0	3325	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963451	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
1453	chr6	-	4691	26	FSM	ENSMUSG00000053470.14	ENSMUST00000207023.2	4753	26	58	4	-27	-4	multi-exon	FALSE	canonical	1	3	junction_25	126.668929102602	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTCGCTGTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	71609916	71566024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609821
1454	chr15	+	6712	31	FSM	ENSMUSG00000058290.5	ENSMUST00000229050.2	6635	31	-32	-45	0	0	multi-exon	FALSE	canonical	3	92	junction_1	63.2712063703195	309	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTGAGAGTTGAAGCTA	359	False	NA	NA	False	NA	NA	NA	102204700	102232792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102204851_102205140_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
1456	chr16	+	4046	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	137	-5	1	4	multi-exon	FALSE	non_canonical	1	193	junction_4	108.324454764379	616	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	1111	False	NA	NA	False	NA	NA	NA	93629145	93672965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
1458	chr5	+	4127	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	4	3	-2	-3	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	775	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTTGTCTTATCTCT	NA	False	NA	NA	False	NA	NA	NA	139186395	139235592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
1460	chr11	-	3525	9	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	-4	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	1391.10018847494	2	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9650	False	NA	NA	False	NA	NA	NA	106679324	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676302_106677295_106677371_106677734_106677901_106679098
1461	chr1	-	4388	16	FSM	ENSMUSG00000026355.12	ENSMUST00000190495.2	4355	16	-30	-3	-13	0	multi-exon	FALSE	canonical	3	2842	junction_5	205.687940552889	37	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287414	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
1462	chrX	+	3391	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-39	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	799.395409564837	2	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524620	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20541790_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1463	chr17	+	9481	63	FSM	ENSMUSG00000032796.9	ENSMUST00000035471.9	9526	63	6	39	0	-39	multi-exon	TRUE	canonical	3	108	junction_11	42.4970342357505	156	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATACCTCTATTAAATG	NA	False	NA	NA	False	NA	NA	NA	68004259	68129603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_68004412_68023688_68023860_68024156_68024270_68044468_68044712_68045705_68045886_68049019_68049110_68050269_68050388_68052040_68052220_68052844_68052951_68053742_68053904_68055038_68055180_68057511_68057686_68059376_68059479_68059772_68059985_68060745_68060858_68063661_68063773_68068597_68068726_68070765_68070853_68071624_68071837_68073947_68074055_68074379_68074561_68075294_68075432_68076374_68076612_68077950_68078095_68079656_68079837_68080681_68080868_68081458_68081587_68082765_68082887_68083902_68084041_68086043_68086166_68087523_68087611_68087873_68088068_68089014_68089158_68090988_68091079_68092045_68092158_68092992_68093156_68097813_68098022_68098204_68098322_68098439_68098604_68101189_68101326_68102194_68102289_68103691_68103809_68105521_68105705_68105977_68106133_68107753_68107898_68109890_68110025_68111394_68111546_68112356_68112482_68114772_68114924_68116205_68116351_68116834_68116977_68117064_68117180_68117324_68117496_68118433_68118586_68119320_68119507_68120847_68120984_68122172_68122286_68122849_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283
1465	chr8	-	3214	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	260	0	-73	0	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86026171	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
1466	chr19	-	3881	2	Antisense	novelGene_ENSMUSG00000093315.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	602	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAAGCGGAGGGGGGCGA	NA	False	NA	NA	False	NA	NA	NA	44295296	44282492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44282674_44291596
1467	chr5	-	3774	12	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10677	-8022	intron_retention	FALSE	non_canonical	0	0	junction_1	0	19	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTGCGGGGTCTTCTC	3876	False	NA	NA	False	NA	NA	NA	129875190	129864466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
1468	chrX	+	3500	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	-2	-482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	691.063065139499	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCCAGATGTAGCCATCC	NA	False	NA	NA	False	NA	NA	NA	20529134	20548936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529319_20534732_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1470	chr18	-	2967	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	80	2	80	-2	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	61	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCAGTCGTTGTAATCTT	279	False	NA	NA	False	NA	NA	NA	35087330	35070468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
1471	chr9	-	4313	34	NNC	ENSMUSG00000004099.17	novel	5870	39	NA	NA	-919	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	183.498663243918	3	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACCCAGAGCCCCACGTG	NA	False	NA	NA	False	NA	NA	NA	20849404	20818812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843411_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366
1472	chr13	+	4131	33	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	38	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	454.36432995553	13	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835704	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885031_49887238
1473	chr7	-	6617	33	NIC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	-2	-2	combination_of_known_junctions	TRUE	canonical	3	48	junction_9	39.344581504319	267	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTGGTATTGACTTT	9994	False	NA	NA	False	NA	NA	NA	101859359	101768606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
1474	chr1	-	3467	14	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-21	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	604.570980949232	24	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	181669965	181642879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659759_181663667_181663854_181665942_181666122_181669852
1477	chr10	+	3012	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	35	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	583.409429117726	4066	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	False	NA	NA	False	NA	NA	NA	128173637	128198348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128180796_128180918_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
1478	chr2	+	5601	18	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9583	0	-161	0	3prime_fragment	FALSE	canonical	3	69	junction_16	36.8251268212062	398	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	4635	False	NA	NA	False	NA	NA	NA	20524440	20815335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
1479	chrX	+	3108	24	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	30	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	672.526298317149	1	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529166	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547675_20548792
1480	chr13	+	5153	24	FSM	ENSMUSG00000017756.10	ENSMUST00000017900.9	5142	24	-11	0	-11	0	multi-exon	FALSE	canonical	3	635	junction_9	57.8026758755535	659	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGTGCCTCATTTCCA	NA	False	NA	NA	False	NA	NA	NA	73911804	73964873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936831_73938059_73938115_73938768_73938900_73940668_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
1481	chrX	+	4543	18	FSM	ENSMUSG00000045103.20	ENSMUST00000113991.8	4438	18	-96	-9	-2	0	multi-exon	FALSE	canonical	2	3	junction_16	104.727393692478	709	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTATTGGTTGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	84091922	84248654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84241109_84241142_84246076
1482	chrX	+	3877	13	FSM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	-34	-1	-34	1	multi-exon	FALSE	canonical	3	982	junction_10	94.3325971702724	848	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139613	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
1483	chrX	+	3067	23	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-9	-483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	833.698710120268	2	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCAGATGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	20524650	20548935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536521_20537985_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1484	chr7	+	1386	11	ISM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	-306	18928	-306	979	5prime_fragment	FALSE	canonical	0	0	junction_1	385.711044695378	77	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGGAGGTTTCTGCTAGG	2314	False	NA	NA	False	NA	NA	NA	13012445	13026422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384
1486	chr2	-	6602	3	FSM	ENSMUSG00000089824.11	ENSMUST00000059647.12	6667	3	64	1	24	-1	multi-exon	FALSE	canonical	3	245	junction_2	24	275	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGCACAGTACTTCTTT	NA	False	NA	NA	False	NA	NA	NA	155953812	155933878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155940293_155945268_155945350_155953705
1487	chr19	+	3604	24	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-15	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	276.020197337757	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	1878	False	NA	NA	False	NA	NA	NA	8875449	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882332_8884682_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
1489	chr5	-	1035	1	Intergenic	novelGene_977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTGAGTAACCTGTGATG	NA	False	NA	NA	False	NA	NA	NA	149539253	149538218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_149538200_149539300
1490	chr12	-	2770	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	86	425	-20	-2	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	53	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGGAATGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1491	chr12	+	3898	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	-1	-2553	-1	-7	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	1936	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCTGAGTCGTTCATG	NA	False	NA	NA	False	NA	NA	NA	86516889	86568392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
1492	chr18	+	3771	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	9	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	563.014724715894	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGTCTAAGAAGCAGAAGT	NA	False	NA	NA	False	NA	NA	NA	35251974	35387825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35270302_35270409_35285651_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
1493	chr9	-	2260	7	NNC	ENSMUSG00000110790.2	novel	3485	2	NA	NA	3546	9309	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	20	34	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAGTTCACCTGCACGGA	1685	False	NA	NA	False	NA	NA	NA	20940107	20930293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20930476_20936839_20937154_20937606_20937891_20938390_20938632_20938727_20938977_20939064_20939416_20939468
1494	chr13	+	5119	20	NNC	ENSMUSG00000038518.16	novel	5019	19	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	236.241706826549	2	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACATTTTGTCTGTCTT	9976	False	NA	NA	False	NA	NA	NA	44884341	45075109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_44884411_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275_45073463_45073957
1495	chrX	+	3766	13	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	3	1	intron_retention	FALSE	canonical	3	1536	junction_8	485.231216363223	14	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTGCTTTTCCTTT	NA	False	NA	-15	True	NA	NA	NA	74139709	74153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149988_74150777_74150857_74151784_74151911_74152301
1496	chr4	+	3023	9	Antisense	novelGene_ENSMUSG00000006219.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1317	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCGCCCGCCGCCCCG	2105	False	NA	NA	False	NA	NA	NA	141303372	141327224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_141305254_141308292_141308417_141310370_141310539_141312002_141312177_141316608_141316733_141317260_141317436_141322533_141322793_141323207_141323260_141327158
1497	chr2	-	4659	5	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5298	5676	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	221.30804323386	1871	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAAGACTACTTTTGCA	NA	False	NA	NA	False	NA	NA	NA	176964127	176950770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176952418_176954658_176957402_176958542_176958604_176958795_176958923_176964046
1498	chr11	-	5861	37	NNC	ENSMUSG00000002052.7	novel	6488	37	NA	NA	284	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	68.9056599209078	10	30	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTTGCCGAGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	78136529	78097850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78098596_78098875_78099064_78099677_78099845_78099927_78100006_78100313_78100363_78102622_78102748_78102908_78103023_78103494_78103734_78104092_78104289_78107030_78107172_78108666_78108810_78109993_78110142_78110708_78110917_78111946_78112075_78112935_78113104_78113173_78113312_78113595_78113732_78113979_78114057_78115191_78115310_78115421_78115562_78116132_78116329_78116489_78116645_78116772_78116924_78117005_78117136_78117500_78117600_78117716_78117866_78119454_78119598_78119779_78119870_78120222_78120340_78120991_78121094_78121753_78122028_78122598_78122684_78122843_78123037_78123330_78123408_78123500_78123660_78124370_78124510_78136373
1499	chr13	+	3982	33	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-6	-62	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_30	459.699272240491	18	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTGATGGAATATTTTA	NA	False	NA	NA	False	NA	NA	NA	49835660	49887681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882251_49883531_49883617_49884893_49885038_49887247
1501	chr4	+	4273	12	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-327270	333079	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	22.9983829830428	1	203	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTTTCATGACACCTTT	NA	False	NA	NA	False	NA	NA	NA	146368147	147075696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146368209_146426583_146426715_146697966_146698071_146740229_146740384_146741834_146741984_146742397_146742804_146803511_146804213_146804380_146804621_146805042_146805189_146817994_146818507_146907043_146908374_147075357
1502	chr11	-	4192	31	NNC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	326.127350721906	9	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGCCATCCATTCCTCT	NA	False	NA	NA	False	NA	NA	NA	98915016	98883777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98884000_98887660_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
1503	chr11	-	6555	23	FSM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	17	0	17	0	multi-exon	FALSE	canonical	3	266	junction_5	36.2819537137853	247	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGACAAAGAATGACTGA	NA	False	NA	NA	False	NA	NA	NA	101442688	101379589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
1504	chrX	+	3796	24	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-724	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	187.117877791076	1	87	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799449	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811166_150812236_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
1505	chr4	-	3206	10	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-60	-18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	91.5993692360621	1	74	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGAAAGTTTCAACAAGT	9463	False	NA	NA	False	NA	NA	NA	147894305	147838448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845736_147868857_147868955_147880114_147880188_147889674_147889780_147891546_147891641_147893153_147893289_147893953_147894125_147894203
1506	chr14	+	4348	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	99.1548662446781	3	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGGTTTCTTTGTGTA	9634	False	NA	NA	False	NA	NA	NA	47535729	47560549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47559234_47559420
1508	chr18	+	4702	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26645	1910	at_least_one_novel_splicesite	FALSE	canonical	2	34	junction_1	378.874869405014	11	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6440	False	NA	-82	True	NA	NA	NA	77126258	77243406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
1510	chr7	-	2911	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	7	465	7	-465	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	50	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAATTTATATAGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	126165576	126146091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
1511	chr17	-	5728	10	NIC	ENSMUSG00000024045.7	novel	4570	14	NA	NA	-8	-1	intron_retention	FALSE	canonical	3	462	junction_7	64.8664344710549	8	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	32540141	32523667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32533119_32534415_32534463_32534628_32536853_32537744_32537784_32540058
1515	chr7	-	1239	2	NIC	ENSMUSG00000003429.12	novel	514	3	NA	NA	-19	7	intron_retention	FALSE	canonical	3	30774	junction_1	0	13	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACAGGCTTGGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	44773794	44771809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44772975_44773720
1516	chr18	+	3663	18	NNC	ENSMUSG00000037815.8	novel	2542	16	NA	NA	409	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	435.161506032163	9	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAGTCTAAGAAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	35252903	35387823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252966_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
1517	chr7	+	4388	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	-40	-2920	-40	2920	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTATAATCTTACTGAA	9958	False	NA	NA	False	NA	NA	NA	42863422	42879186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
1518	chr6	+	2431	8	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	36	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCTGCTGCTGCTGCT	529	False	NA	75	True	NA	NA	NA	122294708	122300539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296501_122296854_122297007_122297170_122297283_122297896_122298012_122298829_122299045_122299290_122299431_122299965
1519	chr4	-	3932	20	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_15	435.013643241329	1340	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGAACATTGCCACTCA	NA	False	NA	NA	False	NA	NA	NA	135080462	135047804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135072645_135072789_135073626_135073757_135074045_135074169_135074425_135074516_135080407
1520	chr13	-	3104	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	74	-6	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2550.06706294368	14	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTATGGGGTTTTGTGTG	5771	False	NA	NA	False	NA	NA	NA	58549310	58538961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58548923
1521	chrUn_JH584304v1	-	5707	1	Intergenic	novelGene_4655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAACTACCATAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	58381	52674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52700_58400
1522	chr14	+	3880	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	255.950482711012	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	1842	False	NA	NA	False	NA	NA	NA	121148646	121184828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179087_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
1523	chr12	+	7402	19	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-8	-49	intron_retention	FALSE	non_canonical	0	0	junction_7	183.649500105197	28	90	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGGAGATGCTTTCTT	3973	False	NA	NA	False	NA	NA	NA	83679017	83729848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706195_83706383_83707081_83707136_83707368_83707453_83707980_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83722093_83722855_83722955_83724628_83724677_83728276
1524	chr8	+	4296	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-28	0	intron_retention	FALSE	non_canonical	0	0	junction_11	270.341630051266	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5813	False	NA	NA	False	NA	NA	NA	107330746	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390490_107390827_107391056_107392025_107392157_107392818_107392963_107395037
1525	chr1	+	5539	27	NIC	ENSMUSG00000048000.16	novel	5724	29	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	39.1092386064814	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATGTGTTGTGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	87254751	87378513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
1526	chr15	-	3654	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	28	5121	28	22	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	7	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGATGGTTGTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	103148215	103105091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
1527	chrX	+	3567	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	24	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	710.204252310559	2	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529160	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537106_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1528	chr11	-	4542	23	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	-28	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	227.957391444212	9	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACATGTAGAATTGCAG	NA	False	NA	NA	False	NA	NA	NA	86648355	86585483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586517_86588090_86588167_86593034_86593091_86597989_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
1529	chrX	-	3330	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3744	0	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	139	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23185162	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
1530	chr5	+	4101	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	32	1	0	-1	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	208	51	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTGTCTTATCTCTGC	NA	False	NA	NA	False	NA	NA	NA	139186423	139235594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
1532	chr12	+	5321	27	NNC	ENSMUSG00000020608.8	novel	5603	27	NA	NA	3	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_19	138.604354764788	556	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTAAGGTCATGCTTTT	4539	False	NA	NA	False	NA	NA	NA	11316108	11369782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348315_11349286_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
1533	chr9	-	3215	5	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-11	intron_retention	FALSE	non_canonical	0	0	junction_3	2052.39506430901	110	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAACAAAATGTGAGTAG	NA	False	NA	NA	False	NA	NA	NA	110775162	110768681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771507_110771597_110773003_110773088_110773312_110774891
1534	chr17	-	2281	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	131	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884199	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878869_45879195_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
1535	chr15	+	5999	23	NIC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	26	-6	combination_of_known_junctions	FALSE	canonical	3	400	junction_1	95.5578769711826	432	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGCTGTGTTTGCTTTCC	16	False	NA	NA	False	NA	NA	NA	25774098	25813751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
1537	chr8	+	3864	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	49	0	intron_retention	FALSE	non_canonical	0	0	junction_4	539.468629641116	3	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8919	False	NA	NA	False	NA	NA	NA	120637644	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667271_120667420_120667851_120668878_120673813_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
1538	chr10	-	5952	25	FSM	ENSMUSG00000034667.9	ENSMUST00000218004.2	6005	25	57	-4	41	4	multi-exon	FALSE	canonical	3	537	junction_24	166.742560845221	4	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAGTGGGCCTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	121462180	121423280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
1539	chr4	+	4006	6	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	266	2	NA	NA	0	-65	multi-exon	TRUE	canonical	0	0	junction_5	201.087045828417	3	167	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTCCCTTATGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	146033867	146135254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034017_146094927_146095022_146126784_146126867_146129876_146130004_146131535_146132686_146132850
1540	chr1	+	4293	33	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	206.875566464481	37	16	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3046	False	NA	NA	False	NA	NA	NA	171910377	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931722_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
1541	chr1	+	4660	29	FSM	ENSMUSG00000041763.15	ENSMUST00000188313.7	4631	29	-29	0	-21	0	multi-exon	FALSE	canonical	3	286	junction_23	40.426725727682	650	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAATTGGTCTTAATTT	3283	False	NA	NA	False	NA	NA	NA	43973145	44042160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
1542	chr13	-	4250	13	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	-1	intron_retention	FALSE	canonical	3	31	junction_3	1987.84776656955	93	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGGTGGTCTTTTTTT	4751	False	NA	NA	False	NA	NA	NA	58550330	58539764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58547027_58547706_58547805_58548146_58548232_58550206
1543	chr6	-	4719	27	NNC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	-20	-4	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_14	126.269558798983	187	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTCGCTGTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	71609909	71566024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577855_71580960_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
1544	chr17	-	4186	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	535	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTTGGTTCCACAAGTT	NA	False	NA	NA	False	NA	NA	NA	28841427	28806625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808245_28808451_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
1546	chr5	-	3081	12	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	503.721325291792	13	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTATGTCCCTAA	NA	False	NA	NA	False	NA	NA	NA	92231578	92200021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92201392_92202493_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
1547	chr5	+	4436	13	NNC	ENSMUSG00000037313.17	novel	2669	15	NA	NA	-1	-1	intron_retention	FALSE	canonical	0	0	junction_5	275.315109869078	41	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCAACCCAGGTCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	33815928	33829541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822363_33822464_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
1548	chr16	+	4666	17	NIC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	-23	-9	combination_of_known_splicesites	FALSE	canonical	1	11	junction_12	142.788250129344	2	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATAATACTGACTTGTCG	7997	False	NA	NA	False	NA	NA	NA	32427777	32451599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
1549	chr15	-	4402	37	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-27	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_3	104.251372966653	2	17	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTGGTCATTGTGT	NA	False	NA	NA	False	NA	NA	NA	76491738	76480005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480678_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
1550	chr3	-	3710	21	FSM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	-255	5	3	-5	multi-exon	FALSE	canonical	3	138	junction_20	265.434944948852	22	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAAAAGCCTCTTGCGT	NA	False	NA	NA	False	NA	NA	NA	104725876	104702156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
1551	chr4	+	3214	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181875	2576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	139.411620749491	11	80	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147394998	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147592042_147592098_147595209_147595337_147596801_147597300_147597965_147598935_147599102
1553	chr17	+	4775	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	236.976975115081	1133	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGATGTTGCCTC	NA	False	NA	NA	False	NA	NA	NA	32255385	32281839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32265204_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
1554	chr16	+	4758	18	NIC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	17	-8	combination_of_known_splicesites	FALSE	canonical	3	20	junction_5	103.076851767224	404	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATAATACTGACTTGTCGG	7974	False	NA	NA	False	NA	NA	NA	32427754	32451600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
1556	chrX	+	4811	27	NNC	ENSMUSG00000000037.18	novel	1894	3	NA	NA	14664	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.642344862659	8	67	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACAGCTAAGCCTTGG	4695	False	NA	NA	False	NA	NA	NA	159921927	160041201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922216_159927749_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
1558	chr5	-	3387	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	2551	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCGGCGGTGCCCAGCTT	NA	False	NA	NA	False	NA	NA	NA	135963461	135937263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938195_135938334_135940506_135963176
1559	chr16	+	4866	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	16	8	16	-4	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	420	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGACTTGTCGGACTC	7973	False	NA	NA	False	NA	NA	NA	32427753	32451604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
1560	chr18	+	3690	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-342	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	425.561314147286	1586	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251569	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35251579_35251959_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
1561	chr1	-	3988	24	NIC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-7	-1850	combination_of_known_splicesites	FALSE	canonical	1	11	junction_2	319.636017001901	73	11	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGTTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	55066560	55026181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55026652_55027097_55027315_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
1563	chr15	+	4643	21	NIC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	-11	-242	combination_of_known_splicesites	FALSE	canonical	1	46	junction_3	185.137489450408	760	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTAATGACTTACTTGT	29	False	NA	NA	False	NA	NA	NA	12117905	12185527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_12118034_12118324_12118425_12135352_12135377_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
1564	chr19	-	935	6	ISM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	74	14	29	-12	intron_retention	FALSE	canonical	3	1402	junction_5	871.235766024329	7	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTAAGACAGAAGAGGTG	NA	False	NA	NA	False	NA	NA	NA	4092189	4090298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902
1565	chr10	-	8814	62	FSM	ENSMUSG00000004356.9	ENSMUST00000004470.9	8821	62	-10	17	-10	-17	multi-exon	TRUE	canonical	3	123	junction_48	34.745281900583	243	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTTTATATGCTACTC	NA	False	NA	NA	False	NA	NA	NA	88662676	88582485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_88582922_88583137_88583284_88584087_88584215_88585121_88585404_88586513_88586586_88587206_88587395_88588768_88588902_88589497_88589630_88590338_88590522_88590612_88590683_88591049_88591130_88592886_88592998_88593718_88593851_88594165_88594337_88596731_88596849_88597604_88597747_88598630_88598798_88600535_88600704_88601272_88601372_88602924_88603082_88603314_88603455_88604496_88604787_88606233_88606317_88606546_88606687_88607723_88607862_88608289_88608431_88608713_88608870_88610533_88610687_88610786_88610838_88611070_88611215_88612025_88612114_88613266_88613412_88614084_88614309_88616809_88616890_88618434_88618579_88621851_88622061_88623316_88623484_88626912_88627039_88627545_88627632_88628460_88628552_88631238_88631428_88634142_88634384_88634545_88634626_88636978_88637056_88640384_88640544_88641997_88642061_88643188_88643340_88644943_88645050_88645576_88645666_88645791_88645948_88649778_88649958_88651730_88651809_88652739_88652875_88653040_88653188_88653727_88653884_88654350_88654489_88655129_88655212_88656688_88656878_88657601_88657735_88657865_88657933_88661279_88661361_88662467
1567	chrX	+	2830	22	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-475	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	766.976598105064	15	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20548772
1568	chr14	+	3411	14	ISM	ENSMUSG00000021806.5	ENSMUST00000225791.2	3976	17	-27	3575	-8	-3575	5prime_fragment	FALSE	canonical	3	1333	junction_3	104.320965799428	4	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTAAGTGTGGCATGGC	NA	False	NA	NA	False	NA	NA	NA	19801324	19852623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405
1569	chr9	-	636	2	ISM	ENSMUSG00000076138.3_ENSMUSG00000037742.15	ENSMUST00000129380.2	845	3	524	-226	309	-9	3prime_fragment	FALSE	canonical	3	15409	junction_1	0	4	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	9632	False	NA	NA	False	NA	NA	NA	78386474	78385739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239
1570	chr19	+	4849	29	FSM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	2	0	2	0	multi-exon	FALSE	non_canonical	3	891	junction_13	92.0610586535271	892	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGTGTGTAATTCATCA	NA	False	NA	NA	False	NA	NA	NA	53588830	53634264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
1571	chr18	+	4104	15	NIC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	-15	310	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	315.986251638406	1816	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGATTCGTCTTGTCGCT	NA	False	NA	NA	False	NA	NA	NA	35695229	35724782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35695313_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
1573	chr1	-	3504	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	6	0	6	0	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	110	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	181669938	181642899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
1574	chr6	-	4410	32	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-47	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	128.565874877988	3	18	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCATCCTGTCCTGGCTGG	3559	False	NA	NA	False	NA	NA	NA	125168500	125144971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162781_125163096_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
1575	chrX	+	3524	27	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	24	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	698.669734516241	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529160	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20545888_20545937_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1576	chrX	-	3489	2	Antisense	novelGene_ENSMUSG00000079297.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACGTATCCGTCTCGG	NA	False	NA	NA	False	NA	NA	NA	32946614	32943045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_32944920_32944999
1577	chr5	-	2077	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-78	96	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833633	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5833382_5833419
1578	chr12	+	2677	10	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGTCTTGGGTCTGGGT	NA	False	NA	NA	False	NA	NA	NA	110657464	110662082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658088_110658551_110658880_110659035_110659305_110659451_110659602_110659745_110659937_110660144_110660311_110660456_110660773_110660999_110661137_110661483_110661850_110661951
1579	chr5	-	4683	26	NNC	ENSMUSG00000029191.17	novel	4751	25	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	134.169659759575	2	62	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	-1	True	NA	NA	False	NA	NA	NA	65492988	65419194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460358_65460400_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
1580	chr16	+	4791	17	NIC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	-7	-2	intron_retention	TRUE	non_canonical	1	76	junction_3	161.933194172782	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATAAAGGTAACTGAAAGT	1081	False	NA	NA	False	NA	NA	NA	93629115	93672958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93629237_93638258_93638332_93641081_93641937_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
1581	chr3	+	6653	7	NIC	ENSMUSG00000027601.14	novel	2953	8	NA	NA	-3	-35	intron_retention	FALSE	canonical	3	831	junction_1	130.817196457075	6	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTGTTGAATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	19242425	19274946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19269868_19271343_19271588_19272325_19272486_19273201
1582	chrX	-	2577	9	NIC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	2	-2349	intron_retention	FALSE	canonical	3	1261	junction_3	87.0674128190335	1	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTGAACAGCAATCTTGC	NA	False	NA	NA	False	NA	NA	NA	158921350	158907553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
1583	chr7	-	3619	9	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	52	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.241831418908	2	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTTACTTACTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	42155097	42122811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123497_42123694_42124773_42124939_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
1584	chrX	+	3469	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	95	480	0	-480	multi-exon	FALSE	canonical	3	1167	junction_1	494.469940036804	1	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20524659	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1585	chrX	-	4752	21	NNC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	-346	1645	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	307.809665215373	2	119	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTAAAAAAATGTTTCT	7809	False	NA	NA	False	NA	NA	NA	37653885	37620505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628973_37629809_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809
1586	chr14	+	4504	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	330.370666978774	3	145	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATTTGCATTACTTCAT	1832	False	NA	NA	False	NA	NA	NA	121148636	121185409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157339_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181306_121181744_121181974_121183488_121183631_121184130
1587	chr7	-	6627	33	NIC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	10	-6	combination_of_known_junctions	FALSE	canonical	3	48	junction_9	39.344581504319	19	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTCCTGGTGGTATTGA	9980	False	NA	NA	False	NA	NA	NA	101859373	101768610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
1588	chr16	+	4561	20	NNC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	101.893295988073	149	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTGTCGGACTCATTT	8016	False	NA	NA	False	NA	NA	NA	32427796	32451608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911_32450126_32450391
1589	chr6	-	3712	6	NIC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	0	-3	intron_retention	FALSE	canonical	3	761	junction_3	45.3845788787337	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAACTGTGTCTATTAC	NA	False	NA	NA	False	NA	NA	NA	72416539	72409785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413513_72413977_72414432_72416328
1590	chr13	-	4187	29	NIC	ENSMUSG00000042590.18	novel	4325	30	NA	NA	24	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	149.235534970593	2	35	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCACCTTTGACTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	107073429	106930951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_106932304_106948715_106948801_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
1591	chr4	+	3133	5	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181872	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	15.5302124904974	4	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147395001	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147591995_147592098_147596801_147598055_147598640_147598865_147599115
1592	chr4	-	2757	4	NNC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	-60	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.377733676847	830	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	8313	False	NA	NA	False	NA	NA	NA	147860350	147838439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845800_147860095
1593	chr6	-	3245	10	NIC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-11	-1	intron_retention	FALSE	canonical	3	615	junction_1	2101.57914758884	285	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTACTTGGTGTAATGC	NA	False	NA	NA	False	NA	NA	NA	51446838	51438104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51438899_51440474_51441068_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
1595	chr1	-	6193	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	2	0	2	0	multi-exon	TRUE	canonical	2	1032	junction_2	157.733865172392	1252	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATAGTATACCAGTTCTT	NA	False	NA	NA	False	NA	NA	NA	55066638	55024327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
1596	chr11	-	6135	32	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	-29	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	377.818933779349	1	191	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGTAGAATTGCAGTT	NA	False	NA	NA	False	NA	NA	NA	86648356	86585481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586522_86588116_86588167_86593034_86593257_86593432_86593598_86594489_86594601_86594696_86594829_86594905_86595049_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616093_86617080_86617279_86621036_86621211_86621543_86621658_86623335_86623493_86624401_86624671_86627896_86628105_86648073
1597	chr5	-	4067	25	NIC	ENSMUSG00000035325.17	novel	4047	26	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	48	junction_13	182.154238673347	37	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATACAGTTAGTCTTTA	8108	False	NA	NA	False	NA	NA	NA	100564093	100509512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
1598	chr13	-	7015	24	NIC	ENSMUSG00000021466.13	novel	7002	24	NA	NA	-173	-1	intron_retention	TRUE	canonical	3	23	junction_23	19.6234881059468	254	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGCTTGTTTCTAGAA	NA	False	NA	NA	False	NA	NA	NA	63713261	63656144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689978_63690127_63690897_63691020_63691303_63691503_63692849_63692942_63693050_63693121_63695809_63696000_63711436_63711630_63713175
1599	chr19	-	3913	2	Antisense	novelGene_ENSMUSG00000093315.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1698	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCAAGCGGAGGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	44295298	44282493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44282692_44291583
1600	chrX	+	5180	17	NNC	ENSMUSG00000025246.14	novel	5234	16	NA	NA	-1536	-5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	153.070028397953	507	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAGAGAACATAGTGACT	NA	False	NA	NA	False	NA	NA	NA	76553082	76706584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_76553225_76628399_76628466_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
1601	chr11	-	7091	8	FSM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	-220	0	-27	0	multi-exon	FALSE	canonical	3	114	junction_1	22.9658131018384	274	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTGGAGTCTGTTGTGA	417	False	NA	NA	False	NA	NA	NA	102447245	102366740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
1602	chrX	-	4682	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	247	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800290	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
1603	chr12	+	3700	4	Intergenic	novelGene_4300	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	8.9566858950296	17	46	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCAAGAACACATGAAACAA	NA	False	NA	NA	False	NA	NA	NA	18447046	18458104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_18447130_18452998_18453126_18453327_18453389_18454675
1604	chr8	-	3565	20	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-7	-183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	473.410201449615	258	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438306	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80410650_80410722_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80432124_80432216_80433862_80433949_80435051_80435182_80438171
1605	chr9	-	4289	17	Fusion	ENSMUSG00002076266.1_ENSMUSG00000064145.13	novel	3924	16	NA	NA	-319	1	multi-exon	FALSE	canonical	3	34	junction_16	275.284511914492	1	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGCCTGTGGAGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	108531246	108480144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108530771
1606	chr9	+	4391	26	FSM	ENSMUSG00000032115.15	ENSMUST00000066601.13	4432	26	32	9	-24	-3	multi-exon	TRUE	canonical	3	476	junction_1	89.8853847964173	971	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTGTATGTGTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	44290818	44303657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
1607	chr3	+	1800	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	210	0	-48	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	97	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	32762865	32781122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
1610	chrX	+	4153	19	Antisense	novelGene_ENSMUSG00000031095.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	243.721354758733	893	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAATATGCAAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	37620492	37650603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_37622608_37625999_37626150_37627828_37628004_37628876_37628985_37629815_37629928_37630927_37631036_37632208_37632295_37633625_37633739_37634373_37634478_37635568_37635761_37636722_37636841_37637303_37637373_37638084_37638167_37638462_37638555_37638713_37638876_37639741_37639817_37640530_37640601_37641258_37641362_37650484
1611	chr2	-	4616	20	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	179.174716261442	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017563	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5010496_5010566_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
1613	chr7	-	2965	15	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	non_canonical	0	0	junction_11	1566.29928624182	21	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676243_110679423_110679530_110680105_110680172_110680713_110680841_110681991
1614	chrX	+	3187	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	5550	-475	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_19	704.31124255466	1	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20534686	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20545880_20547061_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1615	chr18	+	4263	18	NNC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	4021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	424.225832656883	1936	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGATTCGTCTTGTCGCT	NA	False	NA	NA	False	NA	NA	NA	35686462	35724782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690459_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720909_35721384_35721507_35723432
1619	chr5	-	4305	11	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10590	-8033	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAACAACGTGCTCTCTGC	3963	False	NA	NA	False	NA	NA	NA	129875103	129864477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129867053_129867645_129867750_129868530_129868644_129868845_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
1620	chr5	-	3541	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	-26	5	-9	-5	multi-exon	FALSE	canonical	3	925	junction_1	0	18	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGTCGGCGGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	135963479	135937267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
1624	chr19	+	3189	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	10	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1486	False	NA	NA	False	NA	NA	NA	44282531	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291713_44293559
1625	chr18	+	3604	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	11	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	425.561314147286	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251950	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657_35387276_35387361
1626	chr2	-	4053	12	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	-50	863	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	530.154600872657	2	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTGTAGTAAATTAACT	NA	False	NA	NA	False	NA	NA	NA	103627368	103594499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604085_103609793_103609917_103613300_103613388_103613487_103613551_103627075
1627	chr5	-	3434	12	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	503.721325291792	321	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTTATCTATGTCCCT	NA	False	NA	NA	False	NA	NA	NA	92231578	92200023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92200458_92201204_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
1628	chr8	-	580	4	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	18	-3917	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_2	854.920009253627	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAAAAAGATGTGGATAT	NA	False	NA	NA	False	NA	NA	NA	125589735	125569143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125569159_125581640_125581768_125587684_125588011_125589623
1630	chrX	+	3566	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	5	485	intron_retention	FALSE	canonical	0	0	junction_5	789.77991726071	1	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATAATTACCCAGATGTA	NA	False	NA	NA	False	NA	NA	NA	20524664	20548929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535491_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547754_20548141_20548244_20548347_20548449_20548616
1631	chr13	+	5591	23	NNC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	107.722027106655	4	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGCATTGTCTCAGATTA	NA	False	NA	NA	False	NA	NA	NA	55782828	55829064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55782918_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
1632	chr11	+	5446	34	Antisense	novelGene_ENSMUSG00000065262.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	145	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTTGTCGGTTAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	98883777	98914998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_98884762_98885032_98885235_98886070_98886205_98886506_98886582_98887534_98887699_98888651_98888746_98890000_98890176_98891596_98891661_98891794_98891957_98892173_98892268_98893699_98893897_98894337_98894534_98894651_98894787_98894937_98895170_98896828_98896980_98897785_98897905_98898003_98898127_98900060_98900146_98900413_98900521_98900613_98900723_98900851_98900962_98901296_98901426_98901731_98901889_98902845_98902985_98905239_98905381_98905515_98905622_98905716_98905888_98906854_98907065_98907253_98907352_98909619_98909768_98912536_98912603_98913167_98913257_98913665_98913819_98914871
1634	chr18	-	4479	25	FSM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	44	6	2	-6	multi-exon	FALSE	canonical	2	677	junction_9	198.19802369656	121	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAAGGTTTGCCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	60981999	60946832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
1635	chr3	-	3564	22	NIC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	2	4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_19	444.637425223403	25	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104725615	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104714277_104714419_104725251_104725438_104725573
1636	chr6	-	4434	32	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	128.674099699212	337	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3520	False	NA	NA	False	NA	NA	NA	125168539	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150052_125150318_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
1637	chr11	+	5438	9	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	24	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	211.328535697383	50	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	88890225	88911119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906032_88906544_88906644_88907020_88910664_88910707
1638	chr13	+	4023	32	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	75	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_31	463.348171006903	6	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGATACTGTGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	49835741	49887731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49836121_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883546_49887432
1639	chr13	+	4406	35	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	18	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	579.422810435174	1	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGATACTGTGTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	49835623	49887732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49838353_49838444_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884901_49885038_49885858_49885969_49887134
1640	chr10	+	2327	7	ISM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	29	5125	28	-5125	5prime_fragment	FALSE	canonical	3	864	junction_6	73.0747334354814	32	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTTAACTGCTGTGTCC	7018	False	NA	NA	False	NA	NA	NA	60113477	60133248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725
1641	chr1	-	3540	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	-36	6	-36	-6	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	2393	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGAGTTGCTGTTAGA	NA	False	NA	NA	False	NA	NA	NA	181669980	181642905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
1642	chr13	+	4270	35	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-30	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	523.603927281261	6	52	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835636	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871425_49871468_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878244_49878719_49878810_49879634_49879731_49880602_49880780_49882134_49882245_49883490_49883617_49884893_49885038_49885815_49885969_49887134
1644	chr18	+	5022	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	0	8	0	-5	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	634	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCAAAGGTGTGCAATGA	NA	False	NA	NA	False	NA	NA	NA	57487812	57526020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
1645	chr15	-	3354	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	1	-9	1	9	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	6011	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCCATTTGTTAGCCTG	NA	False	NA	NA	False	NA	NA	NA	81284243	81247860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
1647	chr4	+	2753	9	Intergenic	novelGene_2093	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_5	70.9840431012492	2	44	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAAACTTAGTCTGAG	NA	False	NA	NA	False	NA	NA	NA	146426566	146804894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426715_146428065_146428160_146797295_146797381_146800390_146800514_146802050_146802609_146802693_146803320_146803488_146803953_146804037_146804674_146804875
1649	chr3	+	4063	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	-23	-1525	-23	0	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	1474	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	135144874	135173959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
1651	chr1	-	3314	14	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	3780	18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	592.565977651284	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTTTGCCACAGCTTT	NA	False	NA	NA	False	NA	NA	NA	181666111	181642881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181643955_181644066_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942
1652	chr6	-	4682	31	NIC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	16	-4	intron_retention	FALSE	canonical	3	436	junction_20	79.9476842830499	7	44	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCATCCTGTCCTGGCT	3411	False	NA	NA	False	NA	NA	NA	125168648	125144973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
1653	chrX	+	4052	15	NNC	ENSMUSG00000031256.12	novel	4502	14	NA	NA	15	-244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	185.585243629609	336	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTCTAACTATAGTACAA	NA	False	NA	NA	False	NA	NA	NA	132960097	132987324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980_132987223_132987276
1654	chrX	+	4522	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-10	-12	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGCAGTTATGTTACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84091890	84248633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
1655	chr2	-	5073	23	NIC	ENSMUSG00000039671.19	novel	4130	24	NA	NA	-14	-3	combination_of_known_junctions	FALSE	canonical	3	8	junction_11	189.676279247277	21	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGATGGCGTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	165726582	165626077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165654268_165654779_165657236_165657390_165662461_165662609_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726527
1656	chr18	-	4514	25	FSM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	15	0	3	0	multi-exon	FALSE	canonical	2	677	junction_9	198.19802369656	1359	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60982028	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
1657	chr10	-	5760	26	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2483	-5	at_least_one_novel_splicesite	FALSE	canonical	3	139	junction_21	367.408494185967	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTCATTGGAGTGGGC	9368	False	NA	NA	False	NA	NA	NA	121464720	121423289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447459_121447578_121447618_121449127_121449297_121449391_121449577_121450909_121451053_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
1658	chr14	+	3736	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	-22	9	-22	-9	multi-exon	TRUE	canonical	3	463	junction_11	40.4855688541514	121	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAAAGCCCTGCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	32043953	32070099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
1659	chr15	-	4482	13	NIC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	1	111	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	195.929036898567	887	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGCCTAGCACAATGAAG	NA	False	NA	NA	False	NA	NA	NA	38519509	38488370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497795_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
1660	chr17	+	4453	16	Antisense	novelGene_ENSMUSG00000004865.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1107	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCTCCGGGCCCGCCCGA	4833	False	NA	NA	False	NA	NA	NA	28806629	28841488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_28809218_28810176_28810268_28811191_28811261_28813142_28813256_28817877_28817976_28818443_28818844_28819216_28819430_28819841_28819869_28821661_28821826_28822409_28822514_28824267_28824363_28825281_28825368_28826056_28826166_28827618_28827738_28840949_28841012_28841373
1661	chr16	-	4203	21	NIC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	0	-6	intron_retention	FALSE	canonical	3	1247	junction_20	237.330207727546	14	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATTGAAAAGAAAACTTAT	NA	False	NA	NA	False	NA	NA	NA	91443819	91418297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91418637_91418734_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
1662	chr18	+	3601	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	437.873605184929	29	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAGCAGAAGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	35251957	35387831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356608_35368724_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
1665	chr16	+	4124	12	Antisense	novelGene_ENSMUSG00000034064.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1195	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGCGGAAGCGCCGCCCA	NA	False	NA	NA	False	NA	NA	NA	38343842	38370562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_38344604_38345133_38347143_38347937_38347995_38349805_38349975_38352145_38352207_38354994_38355186_38358267_38358327_38363197_38363322_38366110_38366249_38368801_38368946_38369705_38369999_38370444
1666	chr1	+	4237	32	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	260.299051580873	23	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3040	False	NA	NA	False	NA	NA	NA	171910371	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935934_171937347_171937493_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
1667	chr2	+	7794	55	NNC	ENSMUSG00000057738.15	novel	7883	56	NA	NA	48	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	112.180954397315	1	21	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTTTCATGTAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	29855742	29921418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29891111_29891172_29892242_29892442_29893326_29893463_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
1669	chr4	-	3688	5	NNC	ENSMUSG00000066000.13	novel	2558	5	NA	NA	-18	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	198.993718493826	14	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACCAATTTTGACTTGC	NA	False	NA	NA	False	NA	NA	NA	147726988	147696402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698459_147698575_147699864_147702873_147702956_147725368_147725463_147726820
1670	chr12	+	5815	22	ISM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	20	8547	20	-9	5prime_fragment	FALSE	canonical	3	60	junction_7	21.3659402170966	197	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAGAAAGACTATCTTTG	NA	False	NA	NA	False	NA	NA	NA	31704887	31979082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643
1672	chr2	+	4305	15	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	30	-3	intron_retention	FALSE	canonical	3	1260	junction_6	148.318758360609	14	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAACGATGTCCTTATGT	NA	False	NA	NA	False	NA	NA	NA	84867607	84877447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
1673	chr15	-	4251	11	FSM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	-8	0	-8	0	multi-exon	FALSE	canonical	3	692	junction_4	128.449367456597	1119	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	7230	False	NA	NA	False	NA	NA	NA	99773345	99676350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
1676	chr15	+	3572	10	NIC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	0	-6	intron_retention	FALSE	canonical	3	651	junction_9	4035.1621596066	20680	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTAACTCCTGTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	103148880	103155113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103154849_103154971
1677	chr2	-	4752	18	NIC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-10	-1	intron_retention	FALSE	canonical	3	560	junction_17	73.2443415153269	10	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCTGTGAAACGTGACT	NA	False	NA	NA	False	NA	NA	NA	5017536	4995535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5002144_5003344_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
1678	chr13	-	4450	13	NIC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	4568	junction_3	863.744014290242	99	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGGTGGTCTTTTTTT	4758	False	NA	NA	False	NA	NA	NA	58550323	58539764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58547027_58547706_58547805_58548146_58548232_58550206
1680	chr3	+	2718	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-8	-9	intron_retention	FALSE	non_canonical	0	0	junction_7	279.992201057567	4	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACCCGTTTGACCATAT	NA	False	NA	NA	False	NA	NA	NA	102965674	102973783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102973429_102973659
1682	chr18	+	1621	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-105	-161	-105	161	mono-exon	FALSE	NA	NA	NA	NA	NA	320	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAGAAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	82356481	82358102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
1683	chr5	+	3935	20	NNC	ENSMUSG00000005672.13	novel	5214	21	NA	NA	23	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	338.223778140631	2	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	789	False	NA	NA	False	NA	NA	NA	75735637	75817386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813464_75816174
1685	chr12	-	2761	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4157.17972187876	52	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTGGAATGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660152_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1686	chr6	-	4312	11	NIC	ENSMUSG00000040669.15	novel	3612	14	NA	NA	5	-62	intron_retention	FALSE	canonical	3	372	junction_6	219.20449356708	14	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCAGCTCCCAACTGTTC	9083	False	NA	NA	False	NA	NA	NA	122316610	122294870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122295607_122296275_122297283_122297896_122298012_122298830_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
1687	chr6	+	3953	24	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	254.655881823782	7	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	87864904	87890577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871098_87872694_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
1688	chr5	-	3042	9	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256654	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208729_108228688_108228776_108241988_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
1689	chr11	-	3176	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	6510.88110515252	3	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113077	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104336_33104561_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33111226_33111547_33111628_33112921
1690	chr1	+	5527	10	Antisense	novelGene_ENSMUSG00000054387.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAGAGACAGGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	132915378	132947171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_132919963_132922239_132922324_132924302_132924447_132929019_132929182_132931528_132931629_132936874_132936933_132938804_132938935_132940372_132940448_132946512_132946623_132947091
1691	chr10	-	3672	16	NIC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	-6	intron_retention	FALSE	canonical	3	2860	junction_9	347.713956515345	15	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATACTCAGTGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	86541326	86526709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_86527613_86528003_86528160_86528249_86528329_86529240_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
1693	chr5	-	3549	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	-32	3	-15	-3	multi-exon	FALSE	canonical	3	925	junction_1	0	29	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCGGCGGTGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	135963485	135937265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
1696	chr7	-	3618	21	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	-7	intron_retention	FALSE	non_canonical	0	0	junction_7	1366.62020601921	2	113	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGATGTAGTTGTACAT	NA	False	NA	NA	False	NA	NA	NA	110682213	110671145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674625_110675500_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
1697	chr2	+	4294	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	31	-671	31	4	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	1141	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	2756	False	NA	NA	False	NA	NA	NA	152689945	152737245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
1698	chr2	-	3146	9	ISM	ENSMUSG00000034101.15	ENSMUST00000036811.13	5126	19	36769	3	-133	-3	3prime_fragment	FALSE	canonical	3	106	junction_2	55.0282597853139	2	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGGGAGGTCTGTG	111	False	NA	NA	False	NA	NA	NA	84443055	84431129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875
1699	chr16	+	4789	18	NIC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	20	-9	combination_of_known_splicesites	FALSE	canonical	1	11	junction_13	103.412099310173	395	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATAATACTGACTTGTCG	7977	False	NA	NA	False	NA	NA	NA	32427757	32451599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
1700	chr3	-	3501	21	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	4	-4	intron_retention	FALSE	non_canonical	0	0	junction_20	294.099914994887	28	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAAAGCCTCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	104725613	104702155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725412_104725459
1702	chr4	-	883	5	NNC	ENSMUSG00000057236.11	novel	722	4	NA	NA	57	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	474.874983548302	3686	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTTTTCTATATAGCC	2549	False	NA	NA	False	NA	NA	NA	129229106	129203324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129216514_129216663_129222380_129222527_129228289_129228438_129229010
1703	chr5	-	3559	7	FSM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	-41	-1144	-15	0	multi-exon	FALSE	canonical	3	934	junction_3	92.4764234218046	123	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
1704	chr3	-	4150	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_24	156.17538218298	766	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1857	False	NA	NA	False	NA	NA	NA	27207980	27151370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207771
1705	chr6	-	3506	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	195	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	1236.70407131213	4	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8680	False	NA	NA	False	NA	NA	NA	145021715	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961378_144963837_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
1706	chr9	-	4005	28	ISM	ENSMUSG00000004099.17	ENSMUST00000216540.2	5543	39	23477	-12	8061	12	3prime_fragment	FALSE	canonical	3	860	junction_16	69.283180657971	1	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCCACGTGCACTGATG	NA	False	NA	NA	False	NA	NA	NA	20840424	20818804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343
1707	chr2	-	5407	18	NNC	ENSMUSG00000034101.15	novel	6170	19	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	91.5416973457516	700	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84481079	84431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84456363_84456482_84480749
1708	chr17	-	1655	8	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	-5	122899	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1026.11024987472	729	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCATCAGCAAAGCACGATG	NA	False	NA	NA	False	NA	NA	NA	47093587	46961933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46961942_47085801_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
1711	chr19	+	2523	16	Antisense	novelGene_ENSMUSG00000024853.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	47	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGCCTACTGGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	5323959	5338419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5324558_5324821_5325004_5325089_5325192_5329296_5329401_5329499_5329641_5329869_5329978_5333670_5333781_5333887_5333975_5334601_5334755_5336218_5336445_5336604_5336685_5336837_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331
1712	chr7	+	5529	1	FSM	ENSMUSG00000045411.17	ENSMUST00000144905.3	1966	1	0	-3563	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43896200_43901700
1713	chr19	-	2062	1	NIC	ENSMUSG00000025007.14	novel	3427	19	NA	NA	2340	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	9	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGACAAAGACTAGAGATT	NA	False	NA	NA	False	NA	NA	NA	40540845	40538783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_40538800_40540800
1714	chr6	-	2988	8	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4340.24625465196	1	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705557_122705604_122707100_122708351_122708556_122709329_122709432_122709728_122709775_122716820_122716953_122717346_122717440_122719334
1715	chr10	+	3850	14	NIC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	-11	-3	intron_retention	FALSE	canonical	3	980	junction_10	373.110180912545	2952	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGGTGATATTTGAA	NA	False	NA	NA	False	NA	NA	NA	111309130	111334008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111331237_111331900
1717	chr16	-	3250	15	NIC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	35	5	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	401.462098244069	16	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACTTGGTTTAAAATTAT	NA	False	NA	NA	False	NA	NA	NA	15455229	15441968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
1718	chr2	-	4078	3	NNC	ENSMUSG00000078905.9	novel	564	3	NA	NA	1343	-258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20	15	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGACTGTAACCAATGTGG	NA	False	NA	NA	False	NA	NA	NA	174908213	174903599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174904723_174905051_174905454_174905660
1719	chr5	-	2118	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-81	-96	-81	96	mono-exon	FALSE	NA	NA	NA	NA	NA	14	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833636	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
1720	chrX	+	3018	23	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	14	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	834.877232772372	2	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524673	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538009_20539068_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1721	chr18	+	3315	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	6	-5	intron_retention	FALSE	canonical	0	0	junction_4	210.167634955073	448	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGGTGGCTTTTGATG	8998	False	NA	NA	False	NA	NA	NA	32970311	32999468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32975303_32975377_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
1722	chr5	-	3451	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	2	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963444	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938582_135938641_135940506_135963176
1723	chr15	+	5731	23	NNC	ENSMUSG00000022272.18	novel	618	2	NA	NA	-2428	-6	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	160.492913259781	5	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGCTGTGTTTGCTTTCC	1177	False	NA	NA	False	NA	NA	NA	25756422	25813751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_25756451_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
1724	chr5	-	3506	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-15	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	462.5	48	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGTCGGCGGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	135963485	135937267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939366_135939406_135940506_135963176
1726	chr11	-	4128	9	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	-10	intron_retention	FALSE	canonical	3	3830	junction_4	159.243867621331	1	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGACTGAATTAAGTGA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
1727	chr11	-	1637	4	ISM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	278	5	278	-5	3prime_fragment	FALSE	canonical	3	6267	junction_3	216.839930722078	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACCATTGTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	120238639	120236521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461
1728	chr4	+	5506	25	FSM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	10	-112	1	112	multi-exon	FALSE	canonical	3	347	junction_1	46.9361083164006	440	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGTTTGTTTGTTTGT	-9	True	NA	NA	False	NA	NA	NA	52439252	52488372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
1731	chrX	+	3819	24	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	65	-727	intron_retention	FALSE	non_canonical	0	0	junction_8	183.139012557688	3	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	NA	False	NA	NA	NA	150799488	150844963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150811178_150811960_150812044_150812186_150812227_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
1732	chr2	-	5502	19	NNC	ENSMUSG00000034101.15	novel	6170	19	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	86.828836877965	701	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84481111	84431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84456363_84456482_84480749
1733	chrX	-	5132	36	NNC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	16	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_35	87.1925572558594	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTACTGTGTTTTGTTTTGT	4333	False	NA	NA	False	NA	NA	NA	92675705	92348371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667488_92675674
1734	chr4	-	3118	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	99.3067973504332	2	82	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9495	False	NA	NA	False	NA	NA	NA	147894273	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845673_147845799_147860095_147860286_147891546_147891641_147893953
1735	chr9	+	2221	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	208	3	0	-3	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	15048	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	1872	False	NA	NA	False	NA	NA	NA	59563858	59586655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
1736	chr6	-	3807	7	NIC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	761	junction_2	36.7956066218056	2	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACTGTGTCTATTACTT	NA	False	NA	NA	False	NA	NA	NA	72416539	72409783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72412098_72412188_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
1737	chr8	-	3951	16	Antisense	novelGene_ENSMUSG00000005410.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTTCGTTCAGCGCCG	NA	False	NA	NA	False	NA	NA	NA	75854320	75836148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_75836221_75836323_75836498_75836712_75836842_75836924_75837055_75839169_75839345_75840792_75840945_75842475_75842644_75844145_75844320_75845882_75845996_75847406_75847550_75847837_75847901_75848160_75848342_75849618_75849733_75850468_75850596_75851426_75852991_75853848
1738	chr15	-	5432	6	NIC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	1009	junction_2	67.4495366922561	708	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTGTGGTGTTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	81845064	81835311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81835814_81836124_81836241_81836925_81839950_81840369_81840462_81840562_81842112_81844915
1739	chr6	-	3947	23	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-14	0	intron_retention	FALSE	non_canonical	0	0	junction_12	143.098308980427	5	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	194	False	NA	NA	False	NA	NA	NA	29609647	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565860_29568922_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
1741	chr18	+	4945	9	NNC	ENSMUSG00000024594.10	novel	5030	9	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	299.873280528626	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCAAAGGTGTGCAATGA	NA	False	NA	NA	False	NA	NA	NA	57487812	57526020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_57487964_57495504_57495622_57496224_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
1742	chr1	+	4002	33	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	255.123329168341	6	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGAGCCTCCTGCTTGCC	3040	False	NA	NA	False	NA	NA	NA	171910371	171949886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942395_171944501_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266_171949414_171949612
1743	chr19	+	4141	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	312	6	16	-6	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	1	102	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGAAACTCTTATTGGT	682	False	NA	NA	False	NA	NA	NA	10583002	10607177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
1744	chr19	+	4219	8	NIC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	134	-297	intron_retention	FALSE	canonical	3	5201	junction_1	1420.13659877621	123	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	977	False	NA	NA	False	NA	NA	NA	8944538	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8950473_8954681_8954855_8954948_8955074_8955307
1745	chr6	-	4358	27	NNC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	-446	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_26	138.315906318935	2	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTCGCTGTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	71610420	71566024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588882_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71610347
1746	chrX	+	4669	27	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12819	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	114.076819337055	275	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAGCTAAGCCTTGGAT	8000	False	NA	NA	False	NA	NA	NA	159932926	160041203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933142_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
1747	chr1	-	2695	9	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	1063	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	677.908871088143	27	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATAGTGTTGTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	128306161	128291444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304561_128305333
1748	chr8	-	3448	17	NIC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-5	-183	combination_of_known_splicesites	FALSE	canonical	1	2	junction_10	329.69227484694	466	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438304	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
1749	chr6	-	4977	17	ISM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	14187	0	12721	0	3prime_fragment	FALSE	canonical	3	435	junction_14	54.0676659381557	4	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGTGTGTGATTGGAT	44	False	NA	NA	False	NA	NA	NA	82737248	82702005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084
1751	chr1	-	4307	28	NNC	ENSMUSG00000034088.16	novel	4427	28	NA	NA	19	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	141.007573564221	1	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAACGTTTGCCCTCTT	NA	False	NA	NA	False	NA	NA	NA	93373352	93335490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351092_93351540_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
1752	chr1	-	7011	11	NIC	ENSMUSG00000054387.14	novel	1914	11	NA	NA	-575	-8	combination_of_known_junctions	FALSE	canonical	3	28	junction_10	131.686597647597	7	123	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTCATTGTGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	132947171	132913965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132947091
1754	chr4	-	2712	4	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.377733676847	135	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	8330	False	NA	NA	False	NA	NA	NA	147860333	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845801_147860133
1755	chr12	+	6424	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	3	-201	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	42.7865791811485	233	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGAGTGCCAAGAATAAT	NA	False	NA	NA	False	NA	NA	NA	116369024	116427150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
1756	chr8	+	3396	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	2992	-2095	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	1001.82356106253	1	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111763539	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111775827_111775930_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
1757	chr3	+	3598	19	NNC	ENSMUSG00000068823.11	novel	4185	20	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5149.82246517679	1	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCACCTAGCGCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	102927935	102965499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936191_102946099_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
1758	chr11	-	3404	22	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1130.48278772095	9	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTGATGCTCTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	100418695	100367180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372578_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100405878_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
1759	chr4	-	3142	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-18	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	92.3755920143411	1	69	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	9505	False	NA	NA	False	NA	NA	NA	147894263	147838433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845673_147845736_147868857_147869009_147891542_147891641_147893153_147893289_147893953
1760	chr6	-	4429	32	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	128.469085508232	19	39	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3530	False	NA	NA	False	NA	NA	NA	125168529	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151252_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
1761	chr8	+	3549	17	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	254.482563253359	6	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395465_107396328
1762	chr11	+	3719	24	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	12	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	774.218518119802	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332214	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337063_72338378_72338466_72338555_72338610_72338799_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
1763	chr11	-	3055	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1126.59438104771	2220	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9654	False	NA	NA	False	NA	NA	NA	106679320	106671180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106671704_106672169_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
1764	chr6	-	5078	16	NIC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	-6	1	intron_retention	FALSE	canonical	3	25	junction_4	213.301101731801	5	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTACGGGGGCTGACT	7899	False	NA	NA	False	NA	NA	NA	124806404	124791999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124799683_124800415_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
1765	chr4	-	2976	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-25	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	92.7968210662413	1	57	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	9498	False	NA	NA	False	NA	NA	NA	147894270	147838436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845673_147845761_147860154_147860286_147891546_147891641_147893153_147893289_147894124
1766	chr12	+	5905	20	NIC	ENSMUSG00000020594.15	novel	6226	21	NA	NA	1	-11	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	42.1280201659477	362	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTCTAGATAAAATATCC	NA	False	NA	NA	False	NA	NA	NA	8724736	8802546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8724840_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
1767	chr1	-	7123	24	FSM	ENSMUSG00000033364.14	ENSMUST00000044260.11	7111	24	-13	1	-10	-1	multi-exon	TRUE	canonical	3	36	junction_8	42.9588980155981	242	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTAGTTTGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	74544975	74474670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
1768	chr8	+	2390	10	ISM	ENSMUSG00000000303.13	ENSMUST00000167688.2	3203	17	54419	116	53655	-116	intron_retention	FALSE	canonical	3	808	junction_2	92.7502953308	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGGTACACACCTGATT	NA	False	NA	NA	False	NA	NA	NA	107384429	107395878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
1769	chr5	+	4149	24	NNC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	276.026915758341	721	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTTGTCTTATCTCT	NA	False	NA	NA	False	NA	NA	NA	139186428	139235592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186455_139195838_139195894_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
1770	chr15	-	5360	26	NNC	ENSMUSG00000022360.9	novel	5684	28	NA	NA	-38	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	99.1754001756484	497	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTTACTCGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	57998516	57957449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_57958968_57959972_57960102_57960647_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57967826_57967966_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
1771	chr12	-	3102	4	NNC	ENSMUSG00000069755.6	novel	928	6	NA	NA	6674	399	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.62466929133727	11	63	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACTCCTTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	20964589	20948175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_20950936_20952270_20952332_20952533_20952661_20964435
1773	chr4	-	5434	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	0	-2654	0	2	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	277	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTCAGGGGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	115980882	115951458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
1774	chr1	-	3544	12	Antisense	novelGene_ENSMUSG00000051223.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	25	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCGAGCAGGAGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	58446488	58432294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_58432375_58433359_58433433_58436832_58437011_58438161_58438256_58439235_58439302_58439863_58440000_58440270_58440382_58440498_58440601_58442045_58442190_58442770_58442911_58443388_58443513_58444192
1775	chr11	+	1686	4	Antisense	novelGene_ENSMUSG00000098955.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCATGACGCCCTGCGAG	13	True	NA	NA	False	NA	NA	NA	120236521	120238688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120237362_120237464_120237649_120237740_120238178_120238463
1778	chr18	+	3717	32	Intergenic	novelGene_4539	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGCTCACTGACTACAC	9435	False	NA	NA	False	NA	NA	NA	42335416	42395172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_42335704_42343134_42343218_42344227_42344328_42345574_42345677_42347823_42347935_42349915_42350028_42350532_42350674_42351568_42351709_42352921_42353014_42354543_42354727_42358817_42358883_42360300_42360359_42361070_42361284_42361722_42361861_42362692_42362777_42362855_42362918_42362998_42363092_42366863_42366939_42367641_42367784_42368546_42368602_42369645_42369721_42369799_42369891_42374966_42375194_42375768_42375836_42376030_42376094_42376839_42376952_42377810_42377976_42379002_42379145_42383895_42383975_42384357_42384446_42390134_42390258_42395023
1781	chr18	+	3797	32	Intergenic	novelGene_4538	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	59	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGCTCACTGACTACAC	9432	False	NA	NA	False	NA	NA	NA	42335413	42395172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_42335786_42343085_42343218_42344227_42344328_42345574_42345677_42347823_42347935_42349915_42350028_42350532_42350674_42351568_42351709_42352921_42353014_42354543_42354727_42358817_42358883_42360300_42360359_42361070_42361284_42361722_42361861_42362692_42362777_42362855_42362918_42362998_42363092_42366863_42366942_42367698_42367784_42368546_42368602_42369645_42369721_42369799_42369891_42374966_42375194_42375768_42375836_42376030_42376094_42376839_42376952_42377810_42377976_42379002_42379145_42383895_42383975_42384357_42384446_42390134_42390258_42395023
1783	chr16	+	4227	18	NNC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	202.586493126348	749	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	1088	False	NA	NA	False	NA	NA	NA	93629122	93672965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93629237_93638258_93638332_93641081_93641215_93641778_93641937_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
1784	chr1	-	4476	30	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9508	1581	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_29	269.033006563674	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAACAAAAACTTCCCCCA	NA	False	NA	NA	False	NA	NA	NA	84827745	84720867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736768_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84822070_84822113_84827643
1785	chr15	-	4495	36	NIC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-10	-18	intron_retention	FALSE	canonical	3	484	junction_24	49.5574373009414	1	64	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACACAAAGAAAACGATT	NA	False	NA	NA	False	NA	NA	NA	76491721	76480034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
1786	chr4	-	2586	4	Fusion	ENSMUSG00000078495.11_ENSMUSG00000093594.2	novel	2405	4	NA	NA	2602	-5	multi-exon	FALSE	canonical	3	29	junction_3	93.09970760188	2	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147891643	147838435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147840693_147842158_147842286_147845677_147845783_147891546
1788	chrX	+	7147	39	NNC	ENSMUSG00000031314.19	novel	7210	38	NA	NA	-5113	-11	intron_retention	FALSE	canonical	3	80	junction_5	58.3892338670319	282	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAATAGAATCGAGAGTG	NA	False	NA	NA	False	NA	NA	NA	100571226	100644629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100571293_100576457_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584428_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
1789	chr12	-	2679	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4042.49604205125	1	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGGAATGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659197_110659434_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1790	chr1	-	3607	22	Antisense	novelGene_ENSMUSG00000098926.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	125	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGTGGTACCAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	180428819	180401260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180401380_180405144_180405262_180406716_180406933_180408096_180408199_180410320_180410439_180411293_180411470_180413405_180413553_180414820_180414965_180415483_180415723_180415920_180415990_180416211_180416346_180416960_180417157_180418780_180418910_180420410_180420494_180421604_180421728_180422216_180422347_180424852_180424954_180425775_180425928_180426516_180426646_180427157_180427218_180427658_180427781_180428018
1791	chr17	-	2435	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	255	1963	-3	-21	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	5	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCATCTTCCTGGATTCT	NA	False	NA	NA	False	NA	NA	NA	28841428	28808584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
1792	chr5	-	3258	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939080_135939341_135940506_135963176
1793	chr10	-	853	1	Antisense	novelGene_ENSMUSG00000025393.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCATAGACTGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	127926133	127925280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127925300_127926100
1794	chr12	+	3622	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	32	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	9	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516922	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565857_86566103
1795	chr7	-	3867	8	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-9	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.633050574122	296	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTACTGCTGTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	42155173	42122806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123497_42123694_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
1796	chr6	-	3096	12	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	3	-3	intron_retention	FALSE	canonical	3	615	junction_1	2828.42684716294	529	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAATTACTTGGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	51446871	51438106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51438899_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
1797	chr3	-	3576	21	NIC	ENSMUSG00000002227.16	novel	3584	21	NA	NA	37	-6	combination_of_known_junctions	FALSE	canonical	3	13	junction_20	291.38745254386	24	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGCAAAAGCCTCTTGCG	NA	False	NA	NA	False	NA	NA	NA	104725842	104702157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725672
1798	chr2	+	3353	31	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	39	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	208.822210398117	1	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146854954	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870057_146870098_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
1799	chr1	-	3536	14	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-2265	48	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_13	584.006656766795	437	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAAGATGGCCAACTCT	NA	False	NA	NA	False	NA	NA	NA	181672876	181642851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181672806
1800	chr15	-	1611	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	130	2	3	-2	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	322	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	161	False	NA	NA	False	NA	NA	NA	98832316	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
1801	chr19	-	3775	25	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24168	-6562	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	69	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCCCCTGAGACACGTTG	NA	False	NA	NA	False	NA	NA	NA	10607186	10582957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590395_10591473_10591540_10592207_10592329_10592845_10592954_10596412_10596487_10596581_10596691_10598903_10599080_10599180_10599231_10600680_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439
1802	chr9	-	4689	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	28	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	506.3856318689	4	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATCTTAAGATTTTATAA	NA	False	NA	NA	False	NA	NA	NA	96993182	96957621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96981134_96981233_96982127_96982293_96992963
1803	chr9	+	3923	5	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-149	intron_retention	FALSE	canonical	3	18488	junction_2	521.436177782094	51	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64080657	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64083499_64084222_64085087_64085178_64085300_64085504
1804	chrX	+	3603	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	2	478	intron_retention	FALSE	non_canonical	0	0	junction_11	773.203953796582	3	93	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAAAGGATAATTACCC	NA	False	NA	NA	False	NA	NA	NA	20524661	20548922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538404_20538515_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347
1805	chr8	-	3406	18	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	6	-182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	321.336374760071	2	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTTACCGGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	80438293	80410272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411859_80412654_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
1808	chrX	+	5356	22	NIC	ENSMUSG00000034160.14	novel	5384	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	162	junction_1	123.579218031398	46	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	100683667	100727957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
1809	chr2	+	3805	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113756.8	3826	21	22	-1	0	0	multi-exon	FALSE	canonical	3	577	junction_4	191.01803579767	662	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7225	False	NA	NA	False	NA	NA	NA	29779828	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
1810	chr6	-	3703	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	235	21	12	-4	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	2	113	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTATGTGTCATGTCACA	8925	False	NA	NA	False	NA	NA	NA	122719469	122704788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
1811	chr18	-	3282	13	NIC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	1	0	intron_retention	FALSE	canonical	3	3478	junction_12	554.013888714795	75	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649585	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
1812	chr18	+	4551	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	22	-2889	22	-5	multi-exon	FALSE	canonical	3	1621	junction_6	144.078210053585	295	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATCTGTTGTCTTATAA	NA	False	NA	NA	False	NA	NA	NA	67908066	67928552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
1813	chr2	+	2130	16	ISM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	10	4454	10	-295	5prime_fragment	FALSE	canonical	3	1870	junction_1	170.821856525056	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGAGGTGAGGCTGGGAT	NA	False	NA	NA	False	NA	NA	NA	157120988	157163785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662
1814	chr8	+	6427	37	NIC	ENSMUSG00000031592.11	novel	6484	39	NA	NA	4	-954	combination_of_known_splicesites	FALSE	canonical	3	32	junction_10	43.1137867869561	52	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAATGCTTTATGACTTT	NA	False	NA	NA	False	NA	NA	NA	41692805	41784175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842
1815	chr6	-	2979	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122704935_122705671_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
1817	chr7	-	4085	29	NIC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	0	-1	intron_retention	FALSE	canonical	3	628	junction_28	72.0019132398861	21	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTGTGTACGAAGA	NA	False	NA	NA	False	NA	NA	NA	28038171	28014323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28030071_28030794_28030955_28037776_28037861_28038119
1818	chr14	+	4392	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	30	-2	combination_of_known_junctions	FALSE	canonical	3	145	junction_37	170.363095695635	4	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886802	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47973556
1819	chr15	-	4613	34	NNC	ENSMUSG00000034022.9	novel	4410	37	NA	NA	-6	-8	intron_retention	FALSE	non_canonical	0	0	junction_20	138.666083914859	3	60	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACGATTTCTTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	76491695	76480024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480108_76480208_76480348_76480419_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485142_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
1820	chrX	+	3523	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	38	-478	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	978.551623574352	1	97	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATGTAGCCATCCTGGC	NA	False	NA	NA	False	NA	NA	NA	20524602	20548940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538080_20538222_20538391_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
1821	chr1	-	6333	34	FSM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	5	4	0	-4	multi-exon	TRUE	canonical	2	89	junction_12	16.3968238094348	160	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGCTGTTCTATGACTGT	NA	False	NA	NA	False	NA	NA	NA	59276385	59202088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59208995_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
1823	chr13	+	4182	32	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	14	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	477.625304314522	2	61	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835619	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846652_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49880590_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
1824	chrX	+	5354	22	FSM	ENSMUSG00000034160.14	ENSMUST00000044475.5	5384	22	30	0	0	0	multi-exon	FALSE	canonical	3	202	junction_4	118.587682955494	502	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTGGTGTAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	100683699	100727957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
1826	chr10	+	3394	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	-13	-2031	2	0	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	2444	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGGTGATATTTGAAGTT	NA	False	NA	NA	False	NA	NA	NA	111309089	111334011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
1827	chr15	-	4880	5	NNC	ENSMUSG00000041935.11	novel	5076	6	NA	NA	-387	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	104.451842970816	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACGAAACCCCCCTAC	5459	False	NA	NA	False	NA	NA	NA	4021947	4011535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_4015962_4018072_4018188_4019036_4019117_4021195_4021347_4021839
1828	chr3	+	3848	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	117	-283	-22	6	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	2144	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGACTTCATGTCTAAT	NA	False	NA	NA	False	NA	NA	NA	105866801	105877359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
1829	chr4	-	3833	19	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	3	160	junction_16	359.875887384787	1449	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTAAATTTAAGAACATTG	NA	False	NA	NA	False	NA	NA	NA	135080513	135047811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135073626_135073757_135074045_135074169_135074425_135074516_135080407
1831	chr11	+	3819	12	NNC	ENSMUSG00000017421.19	novel	1562	12	NA	NA	0	-110	intron_retention	FALSE	canonical	3	28	junction_2	358.33676851451	44	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATTTATGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	80274156	80286961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80277005_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
1832	chr16	+	4684	10	FSM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	-18	-2464	-18	0	multi-exon	FALSE	canonical	3	375	junction_1	83.9617784882715	575	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	84631794	84660667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
1833	chr1	+	4522	21	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	65	-6	intron_retention	FALSE	canonical	3	35	junction_6	110.791967217845	34	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAACTGGGCCTCCTGA	9435	False	NA	NA	False	NA	NA	NA	87604025	87648218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625117_87625268_87625834_87625953_87626749_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
1835	chr4	+	3819	5	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	4	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	184.963509914794	19	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145397258	145431010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145429182_145430897
1836	chr6	+	3763	14	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	16	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAGAATCAGTAAAAGGT	529	False	NA	75	True	NA	NA	NA	122294708	122313976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298010_122298827_122299043_122299283_122299431_122299965_122300777_122302418_122302908_122309478_122309637_122310249_122310400_122311028_122311088_122311973_122312042_122313815
1838	chr9	+	2844	12	Fusion	ENSMUSG00000032607.13_ENSMUSG00000007815.14	novel	2082	9	NA	NA	80	3	intron_retention	FALSE	canonical	0	0	junction_7	651.98553702967	2	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTATTCTCTTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	108174200	108215136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
1839	chr5	-	5869	6	NNC	ENSMUSG00000048578.12	novel	5955	5	NA	NA	22	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	473.429783600483	570	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACTCCGTGTTGAGAGTG	4746	False	NA	NA	False	NA	NA	NA	115296216	115281043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861_115295969_115296028
1840	chr11	-	3690	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.337481440185	765	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	NA	False	NA	NA	NA	40624285	40592221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598992_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
1841	chr18	+	3616	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	425.561314147286	254	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251965	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657_35386895_35386953
1842	chr6	-	3447	10	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-8	-1	intron_retention	TRUE	non_canonical	0	0	junction_3	2982.87128638014	1	87	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTACTTGGTGTAATGC	NA	False	NA	NA	False	NA	NA	NA	51446835	51438104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440474_51441068_51441192_51441407_51441468_51442167_51442222_51443121_51443203_51443282_51443385_51443470_51443686_51443885_51444033_51444164_51444276_51446650
1843	chrX	+	3552	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-475	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_23	705.5650966424	2	88	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547758_20548156_20548244_20548347_20548449_20548616
1844	chr6	-	4243	24	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-8	0	intron_retention	FALSE	canonical	3	7	junction_23	185.996371694595	893	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	15	True	NA	NA	False	NA	NA	NA	29609826	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29602857_29602910_29609364
1846	chr6	+	607	1	Antisense	novelGene_ENSMUSG00000030002.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAGCCGAGGATCAATCG	NA	False	NA	NA	False	NA	NA	NA	85930760	85931367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_85930800_85931400
1847	chr6	+	671	4	NNC	ENSMUSG00000107230.2	novel	894	3	NA	NA	-6483	-40286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACGCGACGCGTCGACG	NA	False	NA	NA	False	NA	NA	NA	85932121	85938622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85932385_85935567_85935697_85936197_85936276_85938421
1848	chr7	-	3612	28	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	-8	0	intron_retention	FALSE	non_canonical	0	0	junction_24	159.110567969278	1590	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28038152	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
1849	chr15	-	4750	30	NIC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-123	-9	intron_retention	FALSE	canonical	3	484	junction_22	49.892226297756	1	66	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACGATTTCTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	76487923	76480025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76487386_76487501_76487583_76487711
1851	chr5	+	3638	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	0	intron_retention	FALSE	non_canonical	0	0	junction_3	719.715737673948	5	73	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208601	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235238_108235802_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251917_108254525
1852	chr2	-	4172	28	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	12	-2	intron_retention	FALSE	canonical	3	271	junction_24	30.0777228218975	47	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCATTTGCCTGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	103591574	103551606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
1853	chr7	-	3114	19	NIC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	9	-456	intron_retention	FALSE	canonical	3	1924	junction_12	283.188503288996	87	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165574	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
1854	chr10	-	2329	14	Antisense	novelGene_ENSMUSG00000006345.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	23	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACCTAAACCGCCCAACAA	NA	False	NA	NA	False	NA	NA	NA	75422001	75400139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_75400213_75400651_75400738_75409442_75409576_75410055_75410230_75411782_75411913_75412047_75412135_75414560_75414755_75415058_75415215_75416332_75416486_75417128_75417263_75420626_75421118_75421218_75421334_75421423_75421544_75421718
1855	chr17	+	4424	14	NIC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	10	0	intron_retention	FALSE	canonical	3	1624	junction_8	133.198432743059	10	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4902	False	NA	NA	False	NA	NA	NA	87979998	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88026964_88028310_88028487_88030758
1856	chr11	-	3719	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_9	1097.30106746192	2	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACATGTCTGCAGGTTTC	8148	False	NA	NA	False	NA	NA	NA	50216488	50185295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198444_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
1857	chr1	-	3533	13	Antisense	novelGene_ENSMUSG00000051223.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGAACTAACGCGAGCAGG	NA	False	NA	NA	False	NA	NA	NA	58446459	58432302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_58432375_58433359_58433433_58436832_58437011_58438161_58438252_58439232_58439302_58439863_58440000_58440270_58440382_58440498_58440671_58442045_58442190_58442770_58442911_58443388_58443513_58444192_58445398_58445440
1858	chr5	-	3331	13	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23744	45573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCGGTTTTCCTTCAATT	NA	False	NA	NA	False	NA	NA	NA	108256652	108208658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208674_108234871_108234958_108235158_108235263_108235807_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247052_108248691_108248857_108251891_108251991_108252130_108252184_108252290_108252396_108254452
1860	chr6	-	1055	1	Genic_Genomic	ENSMUSG00000039985.15	novel	NA	NA	NA	NA	607	-869	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGCTGGGAGTTGAAC	NA	False	NA	NA	False	NA	NA	NA	148834040	148832985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_148833000_148834000
1862	chr18	+	3646	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	437.81622284093	1395	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAACCAAGTCTAAGAA	NA	False	NA	NA	False	NA	NA	NA	35251935	35387817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377055_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
1863	chr18	-	3652	31	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	107	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	648.480466595221	4	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTTGGGCCATGTTATT	NA	False	NA	NA	False	NA	NA	NA	42395049	42335415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352926_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361879_42362840_42362922_42363016_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
1865	chr1	+	1750	6	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	62624	-134	-624	134	3prime_fragment	FALSE	canonical	3	1493	junction_1	85.0656217281694	1	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTGACCAGACTTTAGT	1092	False	NA	NA	False	NA	NA	NA	86054964	86067007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
1866	chr6	-	4335	24	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	28	0	intron_retention	FALSE	canonical	0	0	junction_5	187.849143109858	69	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	-17	True	NA	NA	False	NA	NA	NA	29609858	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29555750_29555863_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
1867	chr11	-	3512	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	40	7	2	-7	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	2250	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCATTCTCTTCATTTA	9656	False	NA	NA	False	NA	NA	NA	106679318	106671187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
1868	chr4	+	3145	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-1287	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	293.581062059527	153	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAACATACAAAAACTTCAG	1855	False	NA	NA	False	NA	NA	NA	146516840	146553462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437_146553025_146553280
1869	chr12	+	4008	4	Genic_Genomic	ENSMUSG00000059229.8	novel	1983	1	NA	NA	-32	10659	multi-exon	FALSE	canonical	3	13	junction_2	22.1710521977545	91	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	19540500	19552950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_19540659_19547562_19547690_19547891_19547953_19549288
1870	chr2	+	3720	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113757.8	3082	21	11	-649	-5	-1	multi-exon	FALSE	canonical	3	101	junction_2	283.670455810964	666	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAGACTCCTTTGATT	7214	False	NA	NA	False	NA	NA	NA	29779817	29821756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29779934_29782197_29782289_29783049_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
1871	chr1	+	4244	33	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	13	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	207.153390857475	1	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGAGCCTCCTGCTTGCC	3053	False	NA	NA	False	NA	NA	NA	171910384	171949886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939514_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
1872	chr3	-	3916	25	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	182.598712839263	149	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1869	False	NA	NA	False	NA	NA	NA	27207968	27151371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27152638_27154976_27155026_27156575_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207865
1873	chr4	+	2675	8	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078497.10	novel	1250	5	NA	NA	75	2556	multi-exon	TRUE	non_canonical	0	0	junction_2	126.710822951559	4	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATAAAGCTGAAAGATTC	2452	False	NA	NA	False	NA	NA	NA	147445842	147600499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147445910_147447267_147447362_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597779_147599031_147599669_147599875
1874	chr14	+	4508	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	50	-40	41	40	multi-exon	FALSE	canonical	3	890	junction_17	126.92017018583	2	144	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAATGAAATGGATTTT	1881	False	NA	NA	False	NA	NA	NA	121148685	121185451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
1876	chr11	-	7449	39	Genic_Genomic	ENSMUSG00000086586.2	novel	151	2	NA	NA	-11590	16942	multi-exon	TRUE	non_canonical	0	0	junction_1	0	385	15	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCGGAACCGCACAGCGCC	8654	False	NA	NA	False	NA	NA	NA	78181482	78152621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_78152743_78153523_78153654_78154414_78154466_78154737_78154886_78155289_78155407_78156002_78156063_78156396_78156586_78157173_78157300_78157419_78157544_78157759_78157834_78157925_78158067_78158922_78159040_78159139_78159314_78159462_78159723_78160312_78160514_78162109_78163209_78163602_78163794_78163917_78164124_78164264_78164386_78164507_78164729_78165290_78165479_78165610_78165712_78165830_78166039_78167867_78168166_78169875_78170029_78170532_78170740_78173882_78173982_78174922_78175107_78175562_78175686_78176261_78176418_78176498_78176621_78177336_78177518_78178119_78178207_78178507_78178619_78178755_78178891_78178988_78179120_78179764_78179867_78180109_78180243_78180623
1878	chr8	-	3678	17	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	19	-7	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_16	363.788265813715	9	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAATTTTGGATTATCT	NA	False	NA	NA	False	NA	NA	NA	86026073	85987027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86025514
1879	chr9	+	4499	26	FSM	ENSMUSG00000032115.15	ENSMUST00000161318.8	4489	26	-15	5	1	-5	multi-exon	FALSE	canonical	3	92	junction_1	153.155429547894	969	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTTGTATGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	44290854	44303655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44291039_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
1880	chr7	-	6117	39	NIC	ENSMUSG00000030536.11	novel	7444	38	NA	NA	-21	-1193	combination_of_known_junctions	FALSE	canonical	0	0	junction_38	149.871729550838	2	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCTTTATTCAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	80466588	80362523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80363694_80366758_80366868_80370616_80370740_80372709_80372877_80373526_80373740_80375334_80375423_80375713_80375850_80376486_80376590_80377700_80377834_80378596_80378830_80379816_80379902_80379989_80380131_80383733_80383959_80385221_80385386_80386009_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80458795_80458863_80466513
1881	chr4	+	3364	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43236	2576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	129.27619012538	3	92	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147533637	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147591995_147592098_147595209_147595337_147596801_147597165_147597836_147599712_147599863
1882	chr7	+	7158	22	FSM	ENSMUSG00000046591.11	ENSMUST00000035977.9	7199	22	31	10	-4	4	multi-exon	FALSE	canonical	3	202	junction_6	27.6640028223357	257	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTAAAAATGCTTATTAC	1955	False	NA	NA	False	NA	NA	NA	79309974	79347886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79310751_79315410_79315688_79317407_79317647_79319195_79319431_79320613_79320744_79325019_79325157_79326974_79327194_79328762_79328915_79330655_79330757_79331557_79331652_79331737_79331818_79331996_79332225_79332703_79332801_79333951_79334010_79335524_79335687_79337973_79338065_79339655_79339715_79340619_79340752_79341569_79341728_79343448_79345571_79345682_79345809_79346401
1883	chr11	-	4213	28	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	-25	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	933.481747459213	1	98	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGCGTGATGCTCTTTT	747	False	NA	NA	False	NA	NA	NA	100414449	100367184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369234_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265
1884	chr4	+	2310	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1876	multi-exon	TRUE	non_canonical	0	0	junction_1	38.0266313438099	2	29	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206906	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146291416_146291514_146368119_146368159_146388486_146388614_146390758_146390897_146391562_146392324_146392742_146392969_146393052_146393429_146552609
1885	chr19	+	2391	20	ISM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	-9	1926	-3	-1926	5prime_fragment	FALSE	canonical	3	708	junction_5	138.293537423391	2	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGTATCTGCCAGTAAC	1890	False	NA	NA	False	NA	NA	NA	8875461	8892110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065
1886	chr14	+	3927	27	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-55	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_26	251.505361266042	1	70	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAAAGAGGCCTGTGTA	1776	False	NA	NA	False	NA	NA	NA	121148580	121184820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130_121184225_121184279
1887	chr2	+	4250	13	ISM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	20611	5	20542	-5	3prime_fragment	FALSE	canonical	3	230	junction_9	27.5422655002977	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGTTTTGAGTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	3305859	3329909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
1888	chr17	-	2166	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	61	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTCCTGCTCTCCTTG	NA	False	NA	NA	False	NA	NA	NA	45884192	45878704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878888_45879336_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
1889	chr4	-	2738	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-11	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	88.7229395365144	1	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCAACAAGTTTGCTTT	9512	False	NA	NA	False	NA	NA	NA	147894256	147838441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845736_147880108_147880185_147891546_147891641_147894124
1890	chr5	-	3345	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	7	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938125_135938299_135940506_135963176
1891	chr5	-	3311	4	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-20	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	436.049181731704	3	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCGGCGGTGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	135963428	135937265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938083_135938203_135938747_135938806_135940506_135963176
1893	chr13	+	5356	19	FSM	ENSMUSG00000038518.16	ENSMUST00000173704.8	4135	19	-17	-1204	-17	317	multi-exon	FALSE	canonical	3	41	junction_1	182.476448674857	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCACTGAGCTTGCCAGTG	9867	False	NA	NA	False	NA	NA	NA	44884232	45074788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_44884365_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
1894	chr2	+	3707	21	NIC	ENSMUSG00000026790.20	novel	403	5	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	114	junction_1	276.935913164039	91	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	6623	False	NA	NA	False	NA	NA	NA	29779226	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779291_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
1895	chr15	-	4451	36	NIC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-24	-5	intron_retention	FALSE	canonical	3	15	junction_30	103.599164759063	28	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGATTTCTTTCAGACGAG	NA	False	NA	NA	False	NA	NA	NA	76491735	76480021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486788_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
1896	chr4	+	3205	9	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.691756139349	1264	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147533648	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147578832_147578931_147579742_147579813_147592042_147592098_147595209_147595337_147596801_147597189_147597356_147598217_147599053
1897	chrX	+	4439	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	66	-3	-48	3	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	620	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACTTAGAAATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	132960011	132987571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
1898	chr6	-	2290	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-15	52	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_14	248.162276154379	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGGGTTTTAGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	30509763	30482361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508761_30509683
1899	chr2	-	4057	15	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	44	877	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	487.829977281731	88	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTTCTATAGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	103627405	103594485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103596814_103602131_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
1900	chr14	+	5152	37	FSM	ENSMUSG00000000365.10	ENSMUST00000095793.3	5264	37	107	5	-9	-5	multi-exon	FALSE	canonical	3	48	junction_25	208.622769314721	247	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATTTTAGTTCATGTTA	NA	False	NA	NA	False	NA	NA	NA	56640144	56762484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56730574_56730862_56737884_56738049_56741374_56741495_56743383_56743465_56745274_56745401_56746735_56746793_56749667_56749785_56751492_56751662_56753792_56753929_56759830_56760021_56761762_56761863_56762269
1901	chr6	+	2982	12	Antisense	novelGene_ENSMUSG00000004980.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTGGAGCCGAGACCGC	5283	False	NA	NA	False	NA	NA	NA	51438111	51446825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_51438413_51438961_51440473_51441067_51441194_51441409_51441526_51442156_51442225_51443124_51443202_51443281_51443385_51443474_51443685_51443884_51444031_51444162_51444276_51444370_51444407_51446650
1902	chr12	+	3858	2	NNC	ENSMUSG00000079104.5	novel	1720	2	NA	NA	114	2286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTATGTTTTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	57277311	57288954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_57277427_57285211
1903	chr1	+	4053	22	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	9	-16	intron_retention	FALSE	canonical	3	35	junction_6	108.523485655297	7	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTGCCTTTCTAACTG	9379	False	NA	NA	False	NA	NA	NA	87603969	87648208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625117_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
1904	chr1	+	3643	22	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_9	473.701222367604	19	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3142	False	NA	NA	False	NA	NA	NA	180396488	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415918_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
1905	chr12	+	2404	15	ISM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	38042	4	-323	-4	3prime_fragment	FALSE	canonical	3	837	junction_7	171.335867791414	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCTTGGTGTTGAAAC	7821	False	NA	NA	False	NA	NA	NA	76340228	76366572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
1907	chr10	-	3783	15	NIC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	1143	-1	intron_retention	FALSE	canonical	3	2860	junction_10	348.090065755332	3	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGTGCTTATTTTCATA	NA	False	NA	NA	False	NA	NA	NA	86540230	86526704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323
1908	chr11	-	3546	15	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1389.87470438078	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCTCTTCATTTATTTA	8982	False	NA	NA	False	NA	NA	NA	106679992	106671183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106671621_106671708_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
1909	chr13	-	3323	9	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	22	-5875	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	334.416072243844	67	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACACTGAGAGTGGAGGT	5928	False	NA	NA	False	NA	NA	NA	38178111	38161251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38162821_38162873_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
1910	chrX	+	3442	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	45	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	186.776156520655	50	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799468	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812007_150817024_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
1911	chr13	+	4181	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-9	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_30	463.442896850254	7	71	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGATACTGTGTTGGAAGT	NA	False	NA	NA	False	NA	NA	NA	49840859	49887733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883575_49884941_49885038_49885815_49885969_49887134_49887262_49887304
1914	chrX	-	3297	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	19	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTAATTGTGCCCATGT	NA	False	NA	NA	False	NA	NA	NA	93256301	93232316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233899_93234230_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
1915	chr2	+	4155	17	NIC	ENSMUSG00000027469.17	novel	3654	18	NA	NA	38	4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	253.965971822506	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	2763	False	NA	NA	False	NA	NA	NA	152689952	152737245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
1916	chr6	-	3643	7	NIC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	0	3	intron_retention	FALSE	canonical	3	761	junction_3	43.9305006674052	516	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414432_72416328
1917	chr6	-	3994	14	NIC	ENSMUSG00000040669.15	novel	3839	14	NA	NA	-15	5	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	308.929416882537	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGGCCTCCATTGTCT	8213	False	NA	NA	False	NA	NA	NA	122317480	122294703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122317155
1918	chr12	-	2577	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-21	-195	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4138.75546632076	3	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGTATTAGTCTTAGA	NA	False	NA	NA	False	NA	NA	NA	110662744	110657656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659597_110659741_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
1919	chr7	-	2042	1	Antisense	novelGene_ENSMUSG00000109511.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTGGTGAGTGAGAAG	5459	False	NA	NA	False	NA	NA	NA	44480230	44478188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_44478200_44480200
1921	chr7	+	6835	11	FSM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	43	-1	-12	1	multi-exon	FALSE	canonical	3	33	junction_5	6.39140047250992	273	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTATGTGCTCTGTGG	2765	False	NA	NA	False	NA	NA	NA	78922989	79015257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78923088_78944255_78944356_78946755_78946956_78973216_78973393_78975181_78975350_78998007_78998192_79000498_79000592_79003737_79003849_79005549_79005620_79007812_79007898_79009707
1922	chr9	+	4310	26	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	179.463627512652	4	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATAGGTTGTATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	44290839	44303653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300713_44300873_44300925_44302132_44302184_44302285
1923	chrX	-	5473	25	NIC	ENSMUSG00000031310.17	novel	5564	25	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	54	junction_18	23.4366388730694	306	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGCTTTCTCTGGGGG	NA	False	NA	NA	False	NA	NA	NA	100463424	100447990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
1924	chr11	+	4864	12	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	3	411	intron_retention	FALSE	canonical	3	4673	junction_2	357.21422144142	62	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACCTGACTGGTCAG	NA	False	NA	NA	False	NA	NA	NA	22940641	22954191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
1925	chr8	-	6449	13	NNC	ENSMUSG00000033658.17	novel	3104	12	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.240162943315	24	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGGTATTTTGTCTGCAT	NA	False	NA	NA	False	NA	NA	NA	111758382	111729817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111730293_111730419_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
1926	chr11	-	4622	9	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	150.963571764847	20	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTACATTGCCGATAT	975	False	NA	NA	False	NA	NA	NA	79145497	79130216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79130433_79130573_79131289_79131513_79131622_79132420_79132535_79132809_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
1927	chr18	-	2922	14	FSM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	-91	-563	0	0	multi-exon	FALSE	canonical	3	3478	junction_13	534.16599817797	79	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649599	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
1928	SIRV2	-	1491	11	FSM	SIRV2A	SIRV201	2051	11	-1	561	-1	-526	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	89	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTACTCGGACTGAATGC	NA	False	NA	NA	False	NA	NA	NA	5908	1561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
1929	chr5	-	2042	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-7	-94	-7	94	mono-exon	FALSE	NA	NA	NA	NA	NA	30	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833562	5831520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
1930	chrX	+	2984	22	NIC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	2	-475	combination_of_known_splicesites	FALSE	canonical	0	0	junction_21	766.976598105064	74	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524661	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20548616
1931	chrX	+	4434	17	NNC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	85.6175179212759	303	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGGTTGGACTGTAGT	NA	False	NA	NA	False	NA	NA	NA	84091927	84248656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222378_84222429_84234215_84234309_84246076
1932	chr11	-	4292	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	131	3	0	0	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	1	120	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
1933	chr11	+	1473	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-1	-121	multi-exon	FALSE	canonical	3	1960	junction_1	0	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGTGGCCAGTATTTGT	NA	False	NA	NA	False	NA	NA	NA	120653618	120655124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
1934	chr4	+	1914	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	-78	-708	-78	708	mono-exon	FALSE	NA	NA	NA	NA	NA	4604	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	103420520	103422434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_103420500_103422400
1935	chr7	-	6495	32	NIC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	-26	-3	combination_of_known_splicesites	FALSE	canonical	3	26	junction_31	46.132303064731	226	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTGGTGGTATTGACTT	9953	False	NA	NA	False	NA	NA	NA	101859100	101768607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101858945
1936	chr2	+	3328	30	NNC	ENSMUSG00000027433.6	novel	623	5	NA	NA	667	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	211.878798953311	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146855582	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855678_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
1937	chr11	-	5445	19	NNC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	-16	-15	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_18	50.3843560376962	1	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTTGAAAGCAGTTTA	2050	False	NA	NA	False	NA	NA	NA	104441462	104393585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411660_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441303
1938	chrX	+	4800	21	Antisense	novelGene_ENSMUSG00000031095.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	231.893423796364	1	108	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCCACCCGATCCTTAAGG	NA	False	NA	NA	False	NA	NA	NA	37620492	37653754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_37622608_37625999_37626150_37627828_37628004_37628876_37628985_37629815_37629928_37630927_37631036_37632208_37632295_37633625_37633739_37634373_37634478_37635568_37635761_37636722_37636841_37637303_37637373_37638084_37638165_37638464_37638555_37638713_37638876_37639739_37639817_37640530_37640601_37641258_37641369_37650492_37650596_37652533_37653088_37653650
1939	chr19	+	5349	31	NNC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.6026646424209	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGGTGTACTTTATAAGG	NA	False	NA	NA	False	NA	NA	NA	34899757	34953135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_34899834_34902020_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34950258_34950410_34951827_34951971_34952892
1940	chr1	-	4041	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	183	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1867.39389710424	434	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4638	False	NA	NA	False	NA	NA	NA	55127000	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55125487_55125665_55126101_55126937
1943	chr18	+	4311	8	Antisense	novelGene_ENSMUSG00000024583.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4903	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCACCGCGCGGGCGCT	NA	False	NA	NA	False	NA	NA	NA	63794166	63825477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_63797402_63804650_63804758_63807119_63807291_63808512_63808587_63809951_63810073_63812423_63812597_63815280_63815381_63825147
1944	chr9	+	5325	27	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1207.05619271302	10	223	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGCTGTGGCTCCGTTAC	NA	False	NA	NA	False	NA	NA	NA	72569757	72657129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577236_72577408_72578521_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633698_72633813_72638183_72638256_72638617_72638719_72639877_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72648860_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
1945	chr4	-	2148	12	Genic_Genomic	ENSMUSG00000084968.2	novel	3700	4	NA	NA	5014	-4731	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGGCTTCCTGGTAAAAC	NA	False	NA	NA	False	NA	NA	NA	108472032	108454352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_108454674_108456517_108456620_108457123_108457280_108459150_108459246_108460575_108460686_108461160_108461332_108461694_108461803_108462722_108462872_108463431_108463553_108469245_108469418_108470265_108470352_108471475
1947	chr16	+	4168	18	NIC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	-3	4	combination_of_known_junctions	FALSE	non_canonical	1	16	junction_3	200.230766521011	793	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	1085	False	NA	NA	False	NA	NA	NA	93629119	93672965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93629237_93638258_93638332_93641081_93641215_93641840_93641937_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
1948	chr4	+	2919	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3079	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	158.863323506578	1	96	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147595135	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147595337_147596801_147597191_147597359_147598196_147599031
1950	chr9	+	5920	33	NIC	ENSMUSG00000037286.16	novel	6186	34	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_4	76.1785461822257	22	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTGGTTATCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	100525668	100840597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
1953	chr8	-	4254	7	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	0	-18	intron_retention	FALSE	non_canonical	2	150	junction_1	555.346338383135	34	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	125589753	125563701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125569159_125587684_125588011_125589623
1954	chr2	+	3503	11	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-15	0	intron_retention	FALSE	canonical	0	0	junction_10	1222.83451456033	2	76	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAAGCTGATGTCCTCTA	NA	False	NA	NA	False	NA	NA	NA	162896591	162922699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896724_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162917696_162919706_162919810_162921513_162922092_162922334
1956	chr5	-	3862	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	-10	-11	intron_retention	FALSE	canonical	3	18	junction_16	155.2290323011	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTATAGAAAGTATTTAGA	NA	False	NA	NA	False	NA	NA	NA	31337265	31313875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331293_31331410_31331434_31331575_31331840_31337227
1960	chr11	+	2763	20	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	0	2942	0	-1880	5prime_fragment	FALSE	canonical	3	2354	junction_12	164.299807038224	8	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCAGGCTGATGCCTCT	NA	False	NA	NA	False	NA	NA	NA	72332180	72339652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557
1961	chr2	+	6681	44	FSM	ENSMUSG00000040549.17	ENSMUST00000111338.10	6665	44	-15	-1	-15	1	multi-exon	TRUE	canonical	3	508	junction_5	59.4884084586321	457	9	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATTTCCCAAAATGCTCT	NA	False	NA	NA	False	NA	NA	NA	91357091	91451010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91357196_91376666_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908_91408049_91408379_91408555_91409767_91409882_91411454_91411584_91416066_91416262_91416582_91416719_91419013_91419103_91422010_91422137_91425027_91425178_91425655_91425860_91426032_91426169_91426706_91426901_91429550_91429724_91430985_91431160_91431350_91431472_91436590_91436771_91437789_91437978_91443084_91443161_91445317_91445507_91445586_91445725_91446138_91446223_91446645_91446806_91450032_91450185_91450326
1963	chr7	-	4035	6	NIC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	125	junction_5	88.2813683627525	186	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	42155184	42122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42155033
1964	chr2	-	4634	17	NIC	ENSMUSG00000034032.16	novel	4546	24	NA	NA	3366	0	intron_retention	FALSE	canonical	3	355	junction_11	34.5506874027131	3	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	119607317	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119605533_119605776_119605893_119607146
1965	chr13	+	4315	35	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	14	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	460.363994883904	1	81	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835619	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875626_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49884942_49884996_49885038_49885815_49885969_49887134
1966	chrX	+	3233	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	7	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	937.385073511237	1	52	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524666	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545698_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548173_20548671
1967	chr4	-	4243	28	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	25	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	190.547165348168	729	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATTCTTGGTCTCCGT	13	True	NA	NA	False	NA	NA	NA	41275091	41194320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41227219_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
1968	chr7	+	3806	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	8	13	8	-13	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCCAGAGAACCAAGGGAG	NA	False	NA	NA	False	NA	NA	NA	103868009	103884346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
1969	chr6	-	3458	16	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	0	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	333.73871350038	5	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATAATTATAGTAATT	5	True	NA	NA	False	NA	NA	NA	30509714	30481249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30501999_30502071_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508813_30509557
1972	chr7	+	4069	25	FSM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	41	653	0	-159	multi-exon	FALSE	canonical	0	0	junction_2	191.489515052391	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTGTACAAGTGGACATT	7239	False	NA	NA	False	NA	NA	NA	109617521	109655163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
1973	chr12	-	4307	11	Antisense	novelGene_ENSMUSG00000020572.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGTAGCTGCAGCGTGCGC	NA	False	NA	NA	False	NA	NA	NA	32903330	32870817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_32870913_32880170_32880321_32883028_32883133_32884898_32885028_32888295_32888455_32889147_32889285_32890921_32891148_32892681_32892802_32896702_32896845_32898614_32898751_32900421
1974	chr5	-	3495	13	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23745	45630	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256651	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228888_108229000_108229082_108234861_108234959_108239924_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
1975	chr15	-	4828	30	NIC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-4	1	intron_retention	FALSE	canonical	2	11	junction_5	107.459717862737	49	58	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	76491715	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
1977	chr7	+	3698	8	NIC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-99	-248	intron_retention	FALSE	canonical	2	115	junction_1	215.402423574185	76	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868536	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
1978	chr5	-	3838	6	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	-6	intron_retention	FALSE	canonical	3	934	junction_2	94.4681957062799	660	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATCTCAGTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
1979	chr18	-	2782	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	7	-219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	1554.29775139772	6128	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	206	False	NA	NA	False	NA	NA	NA	35087403	35070685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085496_35085729_35085789_35087222
1980	chr4	+	2795	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	133.478462682187	38	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147576867	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801_147598301_147599589
1981	chr15	+	5615	21	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	23	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	64.9357374640498	10	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775657	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57803530_57803683_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
1982	chr18	-	4629	11	NIC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	0	-4	intron_retention	FALSE	canonical	3	3478	junction_10	605.149774849169	1	129	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACCAAAACACTTTG	NA	False	NA	NA	False	NA	NA	NA	64649570	64632732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64634947_64636578_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
1983	chr10	-	3733	15	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	-120	-2	intron_retention	FALSE	canonical	3	32	junction_14	943.201820115604	6	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAGTGCTTATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86541493	86526705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86527613_86528003_86528160_86528249_86528329_86529240_86530024_86530213_86530484_86531340_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541397
1984	chr16	+	3785	18	FSM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	-201	-2	-196	2	multi-exon	FALSE	canonical	3	873	junction_12	92.1558406284578	1117	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598375	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
1985	chrX	-	3601	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	3	0	3	0	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	1299	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	NA	False	NA	NA	NA	37545328	37508383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
1986	chr11	-	3367	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	919.376649404034	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100367236_100368836_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
1987	chrX	+	3496	22	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	190.525207978586	12	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	NA	False	NA	NA	NA	150799449	150844963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810953_150816708_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
1988	chr5	-	4509	28	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	74.6435149292131	593	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGCAGTCTCTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	108777616	108717287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771294_108772048_108772109_108772895_108772958_108777366
1989	chr6	+	3003	3	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	2271	610	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGGTCTTATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	122684552	122691588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122690146_122690574
1990	chr10	+	4096	15	Antisense	novelGene_ENSMUSG00002076247.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	699	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTGGGGTACCCGCCCG	1331	False	NA	NA	False	NA	NA	NA	60934424	60983482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_60936787_60937458_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941299_60942042_60942150_60943355_60943443_60947938_60948069_60949215_60949294_60949788_60949937_60953473_60953540_60959085_60959258_60982039_60982111_60983363
1991	chr17	+	3970	15	NIC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	1	-2	intron_retention	FALSE	canonical	3	1624	junction_8	137.35014097004	4	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGGGGGTACCTTGTA	4872	False	NA	NA	False	NA	NA	NA	87979968	88031139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88026234_88026715_88026964_88028310_88028487_88030758
1992	chr2	+	3265	29	NIC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	51	-60	combination_of_known_splicesites	FALSE	canonical	2	59	junction_11	204.606650374691	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTACAGAAATTTGTGG	NA	False	NA	NA	False	NA	NA	NA	146854966	146919860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
1994	chr1	+	6698	10	NIC	ENSMUSG00000026554.16	novel	2754	14	NA	NA	-2	2	intron_retention	FALSE	canonical	3	418	junction_1	55.515763527128	329	110	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGTGTGGTATGTGGT	NA	False	NA	NA	False	NA	NA	NA	171975682	172023958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172016637_172020084_172020205_172021351
1996	chr6	-	2099	13	ISM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	79	2587	0	2361	5prime_fragment	FALSE	canonical	1	1040	junction_5	609.577466365022	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTCAGACACCACCCCAGTA	NA	False	NA	NA	False	NA	NA	NA	88875683	88863042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
1997	chr6	-	3726	14	FSM	ENSMUSG00000040669.15	ENSMUST00000161054.8	3612	14	-7	-107	4	-5	multi-exon	FALSE	canonical	3	372	junction_9	201.373802377627	16	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGCCTCCATTGTCTTA	9082	False	NA	NA	False	NA	NA	NA	122316611	122294701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
1998	chr12	+	4596	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	9	-2586	9	-370	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	1599	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGAGAATGTTCATATG	8434	False	NA	NA	False	NA	NA	NA	33004191	33029489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
1999	chr4	-	2821	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-24	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	100.146692406689	3	39	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	9499	False	NA	NA	False	NA	NA	NA	147894269	147838432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147889689_147889780_147891546_147891641_147894124
2000	chr2	-	4213	20	NIC	ENSMUSG00000039671.19	novel	5093	23	NA	NA	-35	1	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	168.212551861858	17	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	165726603	165626073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
2002	chr9	+	5603	28	FSM	ENSMUSG00000032481.18	ENSMUST00000088716.12	5717	28	113	1	56	-1	multi-exon	FALSE	canonical	3	994	junction_27	99.253261289205	685	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCATTCTCTGCATTCA	2558	False	NA	NA	False	NA	NA	NA	109961160	110069245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944_110064122_110066886
2003	chr9	+	1632	1	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	44	-49	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTGAAAGGAATGTGCTC	2529	False	NA	NA	False	NA	NA	NA	40712641	40714273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_40712600_40714300
2004	chr6	-	3540	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	301	118	-54	-101	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	1	89	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTTTACATTTGCCA	8991	False	NA	NA	False	NA	NA	NA	122719403	122704885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
2005	chr15	-	3206	5	NNC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-86	510	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1689.75286654587	1	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTCACGTCTGTTTT	672	False	NA	NA	False	NA	NA	NA	36793849	36770503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775691_36775824_36776489_36776614_36790927_36791233_36793722
2006	chr13	+	4396	34	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	-2504	-5	at_least_one_novel_splicesite	FALSE	canonical	1	31	junction_1	369.099069422653	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTTGGAAGTAGTTA	NA	False	NA	NA	False	NA	NA	NA	49838364	49887738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49838444_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
2007	chr11	-	5438	29	NNC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.3880126858041	38	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATGTCTGTTTTCCGAT	NA	False	NA	NA	False	NA	NA	NA	68899286	68876527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_68876782_68877711_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
2008	chr2	+	4648	1	FSM	ENSMUSG00000065287.3	ENSMUST00000083353.3	133	1	-1582	-2933	-1582	2933	mono-exon	FALSE	NA	NA	NA	NA	NA	16	89	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGATAGTATGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	130116574	130121222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116600_130121200
2009	chr11	-	5662	18	NNC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	20	221	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	58.7417667057209	9	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATGGTAATTTTTAGAA	2086	False	NA	NA	False	NA	NA	NA	104441426	104393349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411660_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104422555_104422682_104425563_104425712_104427420_104427497_104441188
2010	chr11	-	2144	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1152	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAATAGATTTATCTAT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48643824_48643995
2011	chr14	+	4513	42	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_41	187.600151321178	547	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTCTGATTGTCGTTGA	NA	False	NA	NA	False	NA	NA	NA	47886786	47974021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971724_47973556
2012	chr14	+	4197	39	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	24	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	199.005651446081	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886796	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886847_47901212_47901773_47904750_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
2013	chr3	-	4074	25	FSM	ENSMUSG00000027699.20	ENSMUST00000108300.8	4086	25	11	1	0	0	multi-exon	FALSE	canonical	3	272	junction_24	111.161098998506	805	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTATGTGTCCTGTCA	1838	False	NA	NA	False	NA	NA	NA	27207999	27151371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207865
2014	chr11	-	4350	10	NNC	ENSMUSG00000017286.16	novel	4203	9	NA	NA	-3	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	235.784951194678	537	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTTTAATCTTATCTT	NA	False	NA	NA	False	NA	NA	NA	76134480	76101412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_76104750_76112685_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
2015	chr19	-	3067	19	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	532.730333306347	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3902	False	NA	NA	False	NA	NA	NA	5345447	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5345283
2016	chr10	-	4007	11	NNC	ENSMUSG00000055531.13	novel	2227	11	NA	NA	-17	1817	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	257.715754272027	2	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTATTTGTCAAAGCCCT	4498	False	NA	NA	False	NA	NA	NA	117212851	117183126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196817_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
2017	chr6	-	4140	19	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	20	-449	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	131.766125117175	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGACCACTGAAAGCCGA	9418	False	NA	NA	False	NA	NA	NA	82751415	82702491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82702554_82703420_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
2018	chr9	-	2813	14	Antisense	novelGene_ENSMUSG00000032042.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	83	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGGTTCAGCCGCACTTC	NA	False	NA	NA	False	NA	NA	NA	35128144	35122468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124580_35124675_35124829_35125038_35125128_35125228_35125351_35125481_35125570_35125855_35126027_35126111_35126327_35126761_35126924_35127003_35127108_35127231
2020	chr18	-	2510	15	NNC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1471.48717116323	39	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649570	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633700_64634423_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
2021	chr16	+	1957	15	ISM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	35	3335	-17	-289	5prime_fragment	FALSE	canonical	3	2673	junction_8	220.09493545342	42	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGACATGGGAGCACAT	NA	False	NA	NA	False	NA	NA	NA	20470436	20478829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706
2023	chr5	+	3772	12	NIC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	405	-21	intron_retention	FALSE	canonical	3	3618	junction_3	496.444149314331	25	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAAGCTACTGGATCAT	NA	False	NA	NA	False	NA	NA	NA	129864466	129875191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
2025	chr12	+	4722	13	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-820	-1	intron_retention	FALSE	canonical	0	0	junction_10	312.655150374267	50	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGTGTGAAGTACA	1632	False	NA	NA	False	NA	NA	NA	109602453	109628142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611695_109611766_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109624486_109624556_109626156_109626242_109627179
2026	chr1	+	3991	29	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	220.822476950447	455	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3055	False	NA	NA	False	NA	NA	NA	171910386	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942718_171946404_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
2027	chr2	-	4434	34	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.171419825742193	2	46	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCGTGTAGCCACGCCT	NA	False	NA	NA	False	NA	NA	NA	180998402	180961551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964687_180965154_180965236_180965474_180965536_180970393_180970472_180972585_180972669_180976702_180976770_180977684_180977835_180980022_180980141_180980844_180980888_180980955_180981033_180982286_180982387_180983315_180983371_180988621_180988698_180988803_180988886_180990965_180991101_180991255_180991368_180991459_180991499_180991678_180991772_180991916_180991995_180992425_180992504_180992817_180992966_180993042_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180996232_180997098_180997345_180997441_180997604_180997688
2028	chr18	-	3731	31	NIC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	1	38	junction_8	467.644637162308	327	13	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTTTGGGCCATGTTA	NA	False	NA	NA	False	NA	NA	NA	42395156	42335417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
2029	chr8	-	7023	6	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	3	0	intron_retention	FALSE	canonical	3	89	junction_3	156.362399572276	404	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATCTGTCTCTGAAACTG	NA	False	NA	NA	False	NA	NA	NA	11685751	11661584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11678531_11682865_11683019_11685410
2031	chr10	+	2781	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	443.8353689272	4218	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173670	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836_128197685_128197759
2032	chr5	-	4523	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	33	1	22	-1	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	487	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTTTTGGCTCCTATT	NA	False	NA	NA	False	NA	NA	NA	74229059	74159387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
2033	chr17	-	4593	14	FSM	ENSMUSG00000024045.7	ENSMUST00000237381.2	4570	14	-31	8	-9	-8	multi-exon	FALSE	canonical	3	68	junction_6	145.1715981155	37	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACGAAGACATTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	32540142	32522655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32532237_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
2034	chr5	-	2099	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-79	-79	-79	79	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833634	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
2035	chrX	-	3108	2	Genic_Genomic	ENSMUSG00000083327.2	novel	2406	1	NA	NA	-256	572	multi-exon	FALSE	canonical	0	0	junction_1	0	25	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATAAGAACAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103392096	103388862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_103391256_103391381
2036	chr4	-	2024	9	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	2	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	362.540342582726	37	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779702	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758454_122765243_122765291_122766124_122766250_122779625
2037	chr7	-	3874	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	-3	6	-3	-6	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	1041	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTCTGGTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	28661768	28592678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
2038	chr5	-	2098	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-78	-79	-78	79	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833633	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
2039	chr10	-	3276	17	NIC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	-2	intron_retention	FALSE	canonical	3	2860	junction_10	341.129717812741	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAGTGCTTATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86541326	86526705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
2040	chr17	+	4371	17	NIC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	37	-8	intron_retention	FALSE	canonical	3	1341	junction_7	112.702872634197	14	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCCAGCGCGTGTCTCGT	NA	False	NA	NA	False	NA	NA	NA	71923246	71966018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
2041	chr7	+	4892	13	ISM	ENSMUSG00000038943.17	ENSMUST00000047558.14	3016	14	24	5	1	0	intron_retention	FALSE	canonical	3	21	junction_11	276.614992664293	66	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79944222	79966002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960920_79961964_79962076_79962779
2042	chr5	-	2095	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-75	-79	-75	79	mono-exon	FALSE	NA	NA	NA	NA	NA	34	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833630	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
2044	chr13	-	2794	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-17	-1	at_least_one_novel_splicesite	FALSE	canonical	1	31	junction_3	2529.83409555259	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	5336	False	NA	NA	False	NA	NA	NA	58549745	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549673
2045	chr2	-	5382	18	NNC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	63.9943769156057	705	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84481109	84431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
2046	chr1	+	2956	16	NNC	ENSMUSG00000104217.2	novel	825	10	NA	NA	-5	11139	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	734.761590963733	30	16	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTTTTGTCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	4878109	4968132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900543_4902533_4902605_4907223_4907298_4911178_4911356_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
2047	chr6	-	3826	24	NNC	ENSMUSG00000012535.15	novel	3590	24	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	141.223414949706	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTACCAGTGTTTTT	16	True	NA	NA	False	NA	NA	NA	29609609	29540832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541314_29541454_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
2048	chr10	-	2747	12	NNC	ENSMUSG00000035835.15	novel	3063	9	NA	NA	2846	1683	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGCTGACACACGTGGAG	NA	False	NA	NA	False	NA	NA	NA	79700269	79694625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79694656_79694782_79695105_79695183_79695354_79695432_79695544_79695612_79695789_79695949_79696025_79696653_79696802_79697845_79697881_79698281_79698375_79698485_79698704_79698811_79698890_79698978
2050	chr11	-	3918	18	FSM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-26	0	-26	0	multi-exon	FALSE	canonical	3	534	junction_10	59.4855104336938	838	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	NA	False	NA	NA	NA	40624275	40592221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
2051	chr14	-	4060	27	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	193	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.515099672693	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGTTTTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	52434680	52397896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52397993_52398386_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
2052	chrX	-	3356	25	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.999131567356817	7	83	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAGAAAGACAGGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	20548940	20534684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539058_20539209_20541822_20541991_20542115_20542307_20544426_20544498_20544825_20545016_20545629_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
2053	chr4	-	3877	24	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	17957	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	197.2231039737	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTGGTCTCCGTGTTC	NA	False	NA	NA	False	NA	NA	NA	41233662	41194316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41229688_41229849_41233603
2054	chr6	-	3892	15	FSM	ENSMUSG00000040669.15	ENSMUST00000161739.8	3893	15	-3	4	-3	-4	multi-exon	FALSE	canonical	3	590	junction_10	176.752392241987	1080	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTCCATTGTCTTAC	9073	False	NA	NA	False	NA	NA	NA	122316620	122294700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
2055	chr7	+	4210	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	244.101797412473	1	81	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATTAAAAGAACTTAATTC	7239	False	NA	NA	False	NA	NA	NA	109617521	109655299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626361_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650445_109650528_109650735_109651917_109652125_109653206_109653324_109654223
2056	chr17	-	3275	3	Antisense	novelGene_ENSMUSG00000023067.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	49	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTAACTCCATCAGGCC	NA	False	NA	NA	False	NA	NA	NA	29320521	29317073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29320094_29320166_29320328_29320427
2057	chr6	-	3466	7	NIC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	0	3	intron_retention	FALSE	canonical	3	761	junction_3	41.5170647645841	413	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413513_72413977_72414101_72414353_72414432_72416328
2058	chrX	+	3487	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-34	486	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	942.10139581682	2	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATAATTACCCAGATGTAG	NA	False	NA	NA	False	NA	NA	NA	20524625	20548930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547565_20547754_20548141_20548244_20548347_20548453_20548624
2059	chr10	-	6656	11	FSM	ENSMUSG00000074802.12	ENSMUST00000105298.3	6305	11	29	-380	16	-60	multi-exon	FALSE	canonical	3	41	junction_2	9.03382532485547	231	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAACCTACTATGTATTT	NA	False	NA	NA	False	NA	NA	NA	89279800	89244744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270154_89270224_89272364_89272472_89279716
2060	chr1	+	4182	34	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	53	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	204.366835590905	2	56	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCCTGCTTGCCGTT	3120	False	NA	NA	False	NA	NA	NA	171910451	171949889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940629_171940709_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
2061	chr10	+	4437	11	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-2	-4	intron_retention	FALSE	non_canonical	0	0	junction_10	493.440371270937	4	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTGTCTTCCCTGAGC	1587	False	NA	NA	False	NA	NA	NA	79690464	79700189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79696029_79696657_79698376_79698486_79698704_79698811_79698890_79698976
2062	chr4	-	3804	19	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	canonical	3	160	junction_16	359.875887384787	50	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGAACATTGCCACTCA	NA	False	NA	NA	False	NA	NA	NA	135080477	135047804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135073626_135073757_135074045_135074169_135074425_135074516_135080407
2063	chrX	+	4698	17	NNC	ENSMUSG00000045103.20	novel	596	4	NA	NA	182	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	80.3716951109033	139	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTATTGGTTGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	84092200	84248654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_84092531_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
2064	chr17	+	4916	16	NIC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	23	-6	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	227.875170506427	6	89	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTATCTTCGGATTGGT	NA	False	NA	NA	False	NA	NA	NA	32255425	32281824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_32255579_32264902_32265204_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274290_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
2065	chr1	-	3503	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	27	-20	9	20	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	2461	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	181669917	181642879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
2066	chr2	+	4325	35	NIC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	0	-1	intron_retention	FALSE	canonical	3	86	junction_34	52.4017370086383	396	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	NA	False	NA	NA	False	NA	NA	NA	180961531	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716_180997873_180997950
2068	chr4	-	3979	13	NIC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	0	-2	intron_retention	FALSE	canonical	3	774	junction_10	202.176696645945	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCCCTTGTTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	116484690	116458250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
2070	chr6	+	3905	15	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	914	10	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCGGCTGGGGGAGGTAC	529	False	NA	75	True	NA	NA	NA	122294708	122316440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298827_122299043_122299283_122299431_122299965_122300777_122302418_122302908_122309478_122309637_122310249_122310400_122311028_122311112_122311933_122312042_122313815_122313973_122316357
2072	chr6	-	3886	10	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	7	intron_retention	FALSE	canonical	3	615	junction_1	3033.03230903568	6	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTTTGTATCCAAATTA	NA	False	NA	NA	False	NA	NA	NA	51446825	51438117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51438899_51440474_51441068_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
2073	chr5	-	2046	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-9	-96	-9	96	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833564	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
2074	chr9	+	5088	1	FSM	ENSMUSG00000119388.1	ENSMUST00000083895.3	99	1	-1996	-2993	-1996	2993	mono-exon	FALSE	NA	NA	NA	NA	NA	28	88	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCCTTGTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	64080708	64085796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080700_64085800
2075	chr18	+	3445	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-8	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	425.561314147286	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGTCTAAGAAGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	35251957	35387824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657_35387530_35387763
2076	chr2	-	2955	4	ISM	ENSMUSG00000027206.14	ENSMUST00000110462.8	1853	13	21437	-613	21394	613	3prime_fragment	FALSE	canonical	3	788	junction_3	131.24277757906	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCAAGTATTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	125679522	125672905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061
2077	chr7	-	3785	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	0	0	junction_10	1337.44149256397	2	135	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676060_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
2078	chr4	+	2608	10	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159917	182157	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	153.315216321002	322	11	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGGCTGTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	146426566	146806009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146797295_146797381_146800390_146800518_146802050_146802609_146802693_146803320_146803488_146803953_146804037_146804422_146804875_146804883_146805893
2079	chr18	-	4443	25	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	-10	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	370.01474257416	2	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAAAGGTTTGCCTTCCC	NA	False	NA	NA	False	NA	NA	NA	60982011	60946833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955871_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965331_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
2082	chr2	+	3572	14	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	-174	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	819.254105843131	3290	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162901094	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162901178_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
2083	chr2	+	3963	17	NIC	ENSMUSG00000027469.17	novel	4161	18	NA	NA	38	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	209.564494473062	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	2763	False	NA	NA	False	NA	NA	NA	152689952	152737241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
2084	chr2	+	4289	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	36	-671	36	4	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	133	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	2761	False	NA	NA	False	NA	NA	NA	152689950	152737245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
2086	chrX	-	2724	13	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	7757	15505	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.1926749801976	36	71	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCTGCCCTTCATGTCTA	NA	False	NA	NA	False	NA	NA	NA	49716186	49688766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49689776_49691657_49691796_49692247_49692403_49694884_49695040_49695696_49695982_49697347_49697485_49697563_49697692_49700981_49701119_49701581_49701728_49704237_49704393_49706308_49706412_49715313_49715387_49716083
2087	chr8	+	3410	15	ISM	ENSMUSG00000000303.13	ENSMUST00000167688.2	3203	17	736	116	-28	-116	intron_retention	FALSE	canonical	3	808	junction_7	90.1298383172967	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGGTACACACCTGATT	5813	False	NA	NA	False	NA	NA	NA	107330746	107395878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
2089	chrX	+	3413	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	61	570	-34	404	multi-exon	FALSE	canonical	3	1167	junction_1	494.469940036804	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCTTCCCTATTACCCA	NA	False	NA	NA	False	NA	NA	NA	20524625	20548848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
2092	chr7	+	2694	3	Antisense	novelGene_ENSMUSG00000008683.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	29	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGGCCGGGCAAACGCA	NA	False	NA	NA	False	NA	NA	NA	117711557	117715382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_117714090_117714332_117714472_117715359
2093	chrX	+	4747	28	NNC	ENSMUSG00000000037.18	novel	1894	3	NA	NA	14702	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.220751922236	25	43	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAAGCCTTGGATGTTAT	4733	False	NA	NA	False	NA	NA	NA	159921965	160041208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922060_159927710_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
2095	chr5	-	2013	1	Genic_Genomic	ENSMUSG00000008348.10	novel	NA	NA	NA	NA	1380	171	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCCTCTGTATACCAGT	NA	False	NA	NA	False	NA	NA	NA	125464870	125462857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_125462900_125464900
2096	chr2	-	4613	17	NIC	ENSMUSG00000027620.17	novel	2127	18	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	117	junction_15	813.426692686563	45	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACAAGAAAATTTTCGTT	NA	False	NA	NA	False	NA	NA	NA	156022110	155989170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156021161_156021806
2097	chrX	-	4782	21	ISM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	11165	-1646	-369	1646	3prime_fragment	FALSE	non_canonical	3	1019	junction_20	124.443109491848	1	120	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAAAAAAATGTTTCTG	7786	False	NA	NA	False	NA	NA	NA	37653908	37620504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809
2098	chr13	-	4285	6	FSM	ENSMUSG00000113204.2	ENSMUST00000220929.2	1179	6	-394	-2712	-2	520	multi-exon	FALSE	canonical	3	7	junction_4	38.8453343401753	103	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATATTTCTGACTCTCCA	4824	False	NA	NA	False	NA	NA	NA	74765823	74752543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74759382_74759441_74760842_74761068_74765320
2099	chr19	+	5420	32	NNC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.3937691101489	150	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGGTGTACTTTATAAGG	NA	False	NA	NA	False	NA	NA	NA	34899788	34953135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_34899834_34902020_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
2100	chr12	-	2754	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	101	426	-5	-3	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	5	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTGGAATGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	110662728	110657464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
2101	chr16	+	4630	10	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	195.680010902153	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	84631781	84660667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643191_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
2103	chr18	-	2526	15	NIC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	40	junction_14	1328.00805259422	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649586	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649557
2104	chr2	+	3722	18	NIC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-4	-708	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	192.176965735151	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGAGTTTAGTTGGTT	7218	False	NA	NA	False	NA	NA	NA	23046525	23088564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_23046744_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
2105	chr9	-	4421	8	NIC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	-9	114	intron_retention	FALSE	canonical	3	280	junction_1	43.7506851258308	16	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGTCACGAACAACAGGT	2263	False	NA	NA	False	NA	NA	NA	58156957	58125710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
2106	chr2	+	4403	34	FSM	ENSMUSG00000038685.19	ENSMUST00000108814.8	4322	34	-46	-35	0	-1	multi-exon	FALSE	canonical	3	117	junction_31	42.9439380842258	493	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	NA	False	NA	NA	False	NA	NA	NA	180961531	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716
2107	chr11	+	4810	11	NIC	ENSMUSG00000007850.17	novel	4002	12	NA	NA	0	4	intron_retention	FALSE	canonical	3	130	junction_1	113.03189815269	71	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTGCTTTAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	50268595	50277359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50268630_50269117_50269255_50270294_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
2108	chr13	-	4126	34	Antisense	novelGene_ENSMUSG00000077360.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	54	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAAGAGGGTGCGGCTTA	NA	False	NA	NA	False	NA	NA	NA	49887731	49835700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_49835783_49840857_49840988_49841632_49841789_49841998_49842117_49843920_49844004_49844966_49845086_49846497_49846646_49855317_49855405_49855960_49856023_49856640_49856737_49857741_49857868_49858306_49858410_49859269_49859359_49860151_49860280_49861879_49861954_49863052_49863249_49865224_49865310_49868286_49868371_49869157_49869304_49871379_49871501_49873051_49873144_49874554_49874634_49875620_49875743_49876144_49876247_49876466_49876551_49878091_49878267_49878694_49878805_49879628_49879729_49880600_49880776_49882130_49882243_49883493_49883614_49884890_49885036_49885813_49885969_49887409
2109	chr5	-	2094	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-75	-78	-75	78	mono-exon	FALSE	NA	NA	NA	NA	NA	22	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGGCACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833630	5831536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
2110	chr17	+	4251	11	NNC	ENSMUSG00000061607.16	novel	649	4	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	53.5522175077746	67	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9397	False	NA	NA	False	NA	NA	NA	36152574	36170562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36163889_36169829
2112	chr7	-	2848	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-25	-456	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	599.266457846591	49	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165555	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161841_126162204_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
2113	chr18	+	1400	4	ISM	ENSMUSG00000025428.16	ENSMUST00000114748.2	2674	12	4808	1824	-191	-57	intron_retention	FALSE	canonical	3	5136	junction_2	204.867979169242	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTCCCGTGTCGGA	NA	False	NA	NA	False	NA	NA	NA	77866463	77868742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_77866599_77866778_77866928_77867526_77867679_77867778
2117	chrX	-	5074	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	-1730	0	1730	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	1	153	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAATGACTTCCTTAATT	NA	False	NA	NA	False	NA	NA	NA	37665073	37620420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
2119	chr3	-	2342	19	NNC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	9	-65	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	61.7861954696782	6	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAATCAATGATGGTGTG	NA	False	NA	NA	False	NA	NA	NA	36054781	36014052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048060_36048161_36049929_36050067_36051673_36051721_36054629
2120	chr10	-	2842	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	49	-19	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_16	877.64061659834	1056	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGATCCCAAATAC	NA	False	NA	NA	False	NA	NA	NA	86541324	86526722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540072_86540261_86541170
2121	chrX	+	3618	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	-5	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	186.195889027951	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799418	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811129_150816708_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
2123	chr2	-	4436	20	NIC	ENSMUSG00000039671.19	novel	6188	24	NA	NA	33	1	combination_of_known_splicesites	FALSE	canonical	3	58	junction_8	168.691674028171	489	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	165740903	165626073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
2124	chr4	-	4388	26	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	178	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	79.2785065449646	42	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGACTTGTCTTTCCTC	27	False	41124289	NA	False	NA	NA	NA	41124277	41114428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117467_41117664_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
2125	chr14	+	4369	41	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	14	-2	combination_of_known_junctions	FALSE	canonical	3	128	junction_40	198.759652281342	12	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886786	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
2127	chr11	+	3035	20	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-6	-226	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	589.050289675944	9	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGCTATATGACGCCAAT	NA	False	NA	NA	False	NA	NA	NA	72332174	72342368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339089_72341892
2128	chr3	+	763	3	ISM	ENSMUSG00000097167.2	ENSMUST00000181819.2	956	4	19	4811	19	-4811	5prime_fragment	FALSE	canonical	2	2	junction_2	5	47	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAATCTAACAACAAAGCA	265	False	NA	NA	False	NA	NA	NA	95124786	95129158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_95125370_95126749_95126861_95129089
2129	chr3	-	3815	19	Antisense	novelGene_ENSMUSG00000068823.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	98	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATCTCGCTTCTCTCG	NA	False	NA	NA	False	NA	NA	NA	102965501	102927925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_102927985_102936103_102936522_102946005_102946205_102947246_102947359_102947756_102947848_102948458_102948559_102950472_102950553_102950870_102951002_102951121_102951245_102951941_102952157_102954099_102954240_102954329_102954493_102956934_102957046_102957619_102957784_102958349_102958467_102960125_102960245_102961968_102962009_102963658_102963787_102964196
2130	chr9	-	733	3	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2349	10	126	-10	3prime_fragment	FALSE	canonical	3	15409	junction_1	167.5	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAATCTGTGTTGGTCAA	9449	False	NA	NA	False	NA	NA	NA	78386657	78385740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559
2131	chr19	+	3833	28	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	666.707562531654	11	78	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	641	False	NA	NA	False	NA	NA	NA	10582961	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442_10606689_10607046
2132	chr8	+	3829	16	Antisense	novelGene_ENSMUSG00000031696.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATGAAGATTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	85987409	86021587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85987939_85988622_85988911_85988992_85990183_85990775_85990952_85997320_85997445_86000100_86000254_86001445_86001657_86005332_86005482_86005588_86005686_86007864_86007973_86008467_86008551_86010618_86010836_86012969_86013153_86014324_86014449_86016334_86016431_86021486
2133	chrX	+	5239	36	Antisense	novelGene_ENSMUSG00000088445.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.333197251134017	225	11	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGAGGCCAAGATAGGCGC	NA	False	NA	NA	False	NA	NA	NA	92348371	92675762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_92349423_92419196_92419291_92464172_92464289_92504973_92505106_92506898_92507083_92517922_92518093_92524083_92524216_92531699_92531836_92534349_92534557_92536326_92536415_92537148_92537188_92604973_92605103_92605481_92605625_92616712_92616837_92619382_92619484_92621101_92621223_92621682_92621815_92624329_92624504_92625623_92625740_92628190_92628284_92629451_92629512_92630603_92630689_92635011_92635167_92637424_92637563_92638378_92638455_92640823_92640935_92646804_92646982_92647067_92647272_92647518_92647606_92648014_92648106_92648956_92649022_92649455_92649569_92664106_92664192_92667424_92667520_92670091_92670219_92675674
2134	chr11	-	5545	11	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	974.798933113901	17	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACTTGCTGTTTTCTT	9743	False	NA	NA	False	NA	NA	NA	106890290	106879460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106884571_106884813_106887473_106888063_106888162_106890184
2135	chr11	-	3750	23	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-61	978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	239.281487301649	130	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97078768	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97052482_97052868_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
2136	chr14	+	4621	16	ISM	ENSMUSG00000030662.11	ENSMUST00000228277.2	4140	26	15795	-620	15795	39	3prime_fragment	FALSE	canonical	3	890	junction_7	145.567700935185	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAAAATGAAATGGATTT	NA	False	NA	NA	False	NA	NA	NA	121169053	121185450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
2137	chr4	-	5186	3	ISM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	47644	0	47644	0	3prime_fragment	FALSE	canonical	3	1299	junction_1	27.5	2	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	134952481	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_134944577_134945818_134946001_134950774
2139	chr2	+	3713	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-107	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	809.068256568618	1953	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162896499	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896724_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
2140	chr19	+	4707	21	NNC	ENSMUSG00000024900.6	novel	4317	19	NA	NA	28	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	140.014026083104	906	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTACATCATCTGTCCCT	NA	False	NA	NA	False	NA	NA	NA	3373312	3435727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3426754_3426982_3428367_3428503_3428880_3429078_3430016_3430170_3431609_3431724_3431931_3432025_3433754
2141	chr2	+	4095	16	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-44	-2	intron_retention	FALSE	canonical	3	1260	junction_7	143.632803433694	3	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGATGTCCTTATGTC	NA	False	NA	NA	False	NA	NA	NA	84867533	84877448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
2142	chr5	-	3477	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	2773	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939080_135939122_135940506_135963176
2144	chr12	+	4976	19	FSM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	28	-778	-11	778	multi-exon	FALSE	canonical	3	212	junction_1	109.211215111695	183	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAGCACCCCCCTCTCA	4009	False	NA	NA	False	NA	NA	NA	83679053	83730675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
2145	chr6	-	5035	10	NNC	ENSMUSG00000030002.16	novel	6435	9	NA	NA	-6	-1486	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	97.2756043922449	744	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTTAATCTCAGCACT	7339	False	NA	NA	False	NA	NA	NA	85938630	85920735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85932277_85932383_85935565_85935698_85936197_85936274_85938419
2147	chr12	-	2681	13	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	11276	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4979.90122266496	26	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGAGATGGCTCATTG	NA	False	NA	NA	False	NA	NA	NA	110662743	110645762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110645771_110657483_110657630_110657706_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
2148	chr6	-	4970	29	NNC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	-26	-5	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_19	143.711636406992	42	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTCGCTGTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	71609915	71566025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71591374_71591520_71593801_71593855_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
2149	chr11	-	3796	12	NIC	ENSMUSG00000018428.16	novel	3828	12	NA	NA	67	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	348.017597161242	125	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGAGTCCATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	88755345	88721619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88734415_88734523_88735084_88736692_88755222
2150	chr9	+	1400	3	ISM	ENSMUSG00000037286.16	ENSMUST00000041418.13	5909	33	309912	1502	-2244	208	3prime_fragment	FALSE	canonical	3	447	junction_1	8	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAAGAGTGTTTTTGGAG	NA	False	NA	NA	False	NA	NA	NA	100835577	100839095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_100836389_100838421_100838503_100838587
2153	chr9	+	4455	27	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	228.386092178556	800	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTATGTGTTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	44290850	44303659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44301000_44301095_44302132_44302184_44302285
2154	chr2	-	3472	29	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.185576872239523	5	45	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTCCCACGTGCGTTC	NA	False	NA	NA	False	NA	NA	NA	146919920	146854954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855115_146866425_146866556_146866634_146866746_146867113_146867217_146868290_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871547_146871644_146871703_146871786_146871895_146876771_146876817_146878578_146878714_146880086_146880206_146882733_146882870_146883905_146884015_146884092_146884182_146884781_146884851_146889552_146889639_146891211_146891308_146891900_146891983_146893632_146893686_146903164_146903236_146903323_146903456_146905150_146905281_146910711_146910774_146916802_146916951_146919403
2155	chr18	-	2919	14	NIC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	2259	junction_13	814.730586754961	2	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649599	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
2156	chrX	+	3238	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	61	-724	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	222.789648547683	33	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799484	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811166_150816757_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
2157	chr2	-	2358	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	324	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGCTCCATTGCTTTT	3740	False	NA	NA	False	NA	NA	NA	154734747	154713336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
2158	chr12	+	3577	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCTGAGTCGTTCATG	NA	False	NA	NA	False	NA	NA	NA	86516886	86568392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565715_86566038
2159	chr2	+	5092	10	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	-1025	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3226.27417646554	1	188	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTTTTATCATTTTG	9678	False	NA	NA	False	NA	NA	NA	75491807	75499751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75491930_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
2160	chr5	-	1947	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-81	79	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833636	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5833218_5833371
2161	chr2	+	4304	33	FSM	ENSMUSG00000038685.19	ENSMUST00000108815.8	4243	33	-61	0	-15	0	multi-exon	FALSE	canonical	3	92	junction_30	41.94582396899	478	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	180961516	180998409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716
2162	chr9	+	2212	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	210	10	2	-10	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	41	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTTGTGTTTT	1874	False	NA	NA	False	NA	NA	NA	59563860	59586648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
2163	chr12	-	4758	3	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	121	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCCAGCGCCCGCGCCC	3517	False	NA	NA	False	NA	NA	NA	24764087	24758278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24760488_24761443_24762763_24762857
2164	chrX	+	4600	27	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12793	3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	111.428593103147	23	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGCAATTAACAGCTAAG	8026	False	NA	NA	False	NA	NA	NA	159932952	160041195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
2165	chr5	-	1888	2	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	260	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCCAAAAAATCTTCATT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125464877_125466760
2166	chrX	+	2778	22	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	7	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	854.14314253321	81	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524666	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537636_20539178_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
2167	chr19	-	3251	22	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	615.163595666313	18	30	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGTACTGGCTAACTAC	3910	False	NA	NA	False	NA	NA	NA	5345439	5323964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5334938_5335017_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
2168	chr17	-	3891	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-22	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	184.660996406253	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGGTTCCACAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	28841483	28806623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808218_28808777_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
2169	chr2	+	4012	18	NNC	ENSMUSG00000027469.17	novel	4161	18	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	205.81795631545	23	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	2771	False	NA	NA	False	NA	NA	NA	152689960	152737241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711621_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
2170	chr6	-	3482	7	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	2	intron_retention	FALSE	canonical	3	761	junction_2	39.7481655761202	408	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTATTACTTGTCC	NA	False	NA	NA	False	NA	NA	NA	72416541	72409779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
2171	chr11	-	2128	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGAAAAAAAAAGAATAGAT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48643869_48644048
2174	chr5	-	2098	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-78	-79	-78	79	mono-exon	FALSE	NA	NA	NA	NA	NA	12	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833633	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
2175	chr1	+	4835	32	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	34	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	830.125318072202	2	151	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095288	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118523_185119252_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147954_185148149_185150408_185150583_185152323_185152477_185156507_185156587_185160048_185160114_185160193
2176	chr18	-	2151	10	ISM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	7068	706	835	147	3prime_fragment	FALSE	canonical	3	5978	junction_5	283.503783152409	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTGTTCTGTCACTAGC	7267	False	NA	NA	False	NA	NA	NA	35080342	35071172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548
2178	chr10	-	5063	6	NIC	ENSMUSG00000061904.13	novel	1395	8	NA	NA	-3	-7	intron_retention	FALSE	canonical	1	1248	junction_5	1149.29219957329	51	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGATGTCTATGAGTT	NA	False	NA	NA	False	NA	NA	NA	90959868	90952660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90959569_90959777
2180	chr18	+	3644	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	0	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	437.608600460768	28	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251935	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384271_35385675_35385804_35386657
2181	chr10	-	4846	7	NNC	ENSMUSG00000061904.13	novel	1395	8	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_5	1666.76043069583	33	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959857	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90957194_90957407_90959569_90959777
2182	chrX	-	4126	12	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	3	-179	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	44.8857134590425	3	86	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACCCAAAGGCAGAAATAC	NA	False	NA	NA	False	NA	NA	NA	49724135	49652180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662229_49666158_49666291_49666747_49666902_49670279_49670434_49715313_49715387_49716083_49716187_49719767_49719873_49723821
2183	chr4	+	4300	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	49	0	49	0	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	1048	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGCCTCTTCATTTTT	6094	False	NA	NA	False	NA	NA	NA	40970954	41013871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
2184	chr1	+	3983	23	NNC	ENSMUSG00000026288.15	novel	577	3	NA	NA	173	-2	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	126.783809287782	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGGCCTCCTGACTGT	9543	False	NA	NA	False	NA	NA	NA	87604133	87648222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604309_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
2185	chr5	+	5095	21	NNC	ENSMUSG00000005672.13	novel	5214	21	NA	NA	39	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	538.853549213513	1	135	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATTTTTCTGTTTGTT	805	False	NA	NA	False	NA	NA	NA	75735653	75817380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75735767_75767712_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799635_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806493_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813496_75813879_75813977_75815073
2186	chr13	+	3754	32	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	14	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_31	376.656132077291	15	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGATACTGTGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	49835619	49887731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883532_49887368
2187	chr3	-	875	2	Genic_Genomic	ENSMUSG00000047676.7	novel	885	1	NA	NA	-78	79	multi-exon	FALSE	non_canonical	0	0	junction_1	0	230	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAAATGATAGCTAT	NA	False	NA	NA	False	NA	NA	NA	149779257	149778215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_149778847_149779013
2188	chr4	+	3275	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181886	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	134.408928274873	2	94	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147394987	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147591995_147592102_147595209_147595337_147596801_147597931_147598098_147598434_147599102
2189	chr2	-	4851	32	NNC	ENSMUSG00000027365.15	novel	7107	39	NA	NA	-12	-2063	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	96.7329912289058	49	80	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCGTTTTGGATACAAAT	NA	False	NA	NA	False	NA	NA	NA	126718118	126641265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126641284_126642208_126642258_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670925_126671211_126672048_126672184_126673116_126673258_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
2190	chr12	+	3131	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	110	0	-5	0	multi-exon	FALSE	canonical	3	837	junction_20	135.484134190258	2249	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	8021	False	NA	NA	False	NA	NA	NA	76302181	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
2192	chr2	+	3609	12	NIC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	276	-1	intron_retention	FALSE	canonical	3	86	junction_11	63.5368052378675	6	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	6472	False	NA	NA	False	NA	NA	NA	180991523	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180997346_180997443_180997873_180997950
2193	chr13	+	3940	32	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	459.147581460334	8	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835608	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880796_49885778_49885969_49887134_49887377_49887499
2194	chr11	+	4649	10	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	0	-9	intron_retention	FALSE	non_canonical	0	0	junction_6	147.138215025831	10	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGAAATGTTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	45946884	46038161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003756_46030514_46030605_46030832_46031058_46033745_46033899_46034618
2197	chr15	+	3475	1	NIC	ENSMUSG00000043091.10	novel	1982	4	NA	NA	4297	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	10	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCGTTGTAAGTTGCAA	NA	False	NA	NA	False	NA	NA	NA	98932498	98935973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_98932500_98936000
2199	chr1	+	6142	17	Antisense	novelGene_ENSMUSG00000099141.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	215	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAGTGGAATAAATGCT	NA	False	NA	NA	False	NA	NA	NA	77343841	77491703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77346308_77349544_77350484_77351400_77351564_77354050_77354243_77359503_77359716_77360159_77360220_77364430_77364622_77365110_77365222_77366667_77366729_77375130_77375250_77376283_77376433_77377833_77377962_77403187_77403521_77421497_77421658_77483184_77483849_77488319_77488388_77491577
2201	chr1	+	2955	11	NNC	ENSMUSG00000026276.21	novel	779	8	NA	NA	21	-531	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	447.236011519645	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGAGTAGTCCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	93407215	93437451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93407322_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93431156_93431241_93433265_93433410_93435548
2202	chr10	-	1962	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	27	2435	-3	4	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	6354	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACATTTTAATGTGTATG	NA	False	NA	NA	False	NA	NA	NA	93725649	93696785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
2203	chr3	+	4227	23	NIC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-68	575	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	89.7851890084843	21	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATCCAAAACTATCATAAA	NA	False	NA	-59	True	NA	NA	NA	63148889	63289619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_63148988_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
2204	chr5	-	3405	12	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	34	-7	intron_retention	FALSE	canonical	3	1644	junction_9	209.426923683743	12	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGTAGAGTTTT	2357	False	NA	-52	True	NA	NA	NA	138170043	138162851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
2206	chr18	-	2572	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1373.74109530827	14	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649604	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638273_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
2207	chr7	-	2853	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	19	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	605.9638520572	128	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165564	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151201_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
2208	chr5	-	4188	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	159.804133585809	45	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	31337253	31313348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331301_31331571_31331840_31337227
2209	chr2	+	3573	13	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	4730	0	68	0	3prime_fragment	FALSE	canonical	3	2736	junction_7	168.068851631969	3277	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162901336	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
2210	chr2	+	7824	54	NNC	ENSMUSG00000057738.15	novel	7820	55	NA	NA	2	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_24	101.646355016174	383	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGCTCCTCTTTATCT	NA	False	NA	NA	False	NA	NA	NA	29855696	29921463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29855798_29868388_29868629_29870088_29870215_29873171_29873313_29873625_29873773_29876176_29876311_29876406_29876552_29876789_29876945_29878345_29878482_29880953_29881056_29881870_29882009_29882648_29882760_29883624_29883703_29883811_29883968_29884172_29884378_29885407_29885590_29886032_29886277_29886435_29886559_29886748_29886967_29888167_29888261_29889137_29889273_29889925_29890075_29892242_29892442_29893326_29893462_29894516_29894553_29896634_29896683_29897505_29897598_29897854_29898000_29898085_29898268_29900710_29900811_29900921_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
2211	chr1	-	4224	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	86	1885	-1	-1881	multi-exon	FALSE	canonical	2	1032	junction_2	157.733865172392	6	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAATAAACATTCGTGTA	NA	False	NA	NA	False	NA	NA	NA	55066554	55026212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
2212	chr6	-	5219	17	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-8	5	intron_retention	FALSE	canonical	3	759	junction_13	46.2837292549985	3	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACGGGGGCTGACTGGTT	7924	False	NA	NA	False	NA	NA	NA	124806379	124791995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
2213	chr19	-	4871	24	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	44	-3	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_23	231.839565477903	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTCTGCGCTTTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	37339966	37246144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339780
2214	chr12	+	2407	10	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAACACAGAGGACGACTC	NA	False	NA	NA	False	NA	NA	NA	110657765	110662115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658088_110658551_110658883_110659039_110659305_110659451_110659602_110659745_110659937_110660144_110660313_110660461_110660776_110661002_110661137_110661483_110661852_110661951
2215	chr15	-	2862	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-119	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	711.346005041772	401	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGACCTTCCCCCATT	NA	False	NA	NA	False	NA	NA	NA	81283914	81247870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248657_81248809_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
2216	chr7	+	3951	8	NIC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	-19	3	combination_of_known_junctions	FALSE	canonical	3	26	junction_2	98.8216286331807	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACTATAGCGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	12568668	12584507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12569092_12569373_12569455_12569881_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
2217	chr17	-	2427	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-4	-25	intron_retention	FALSE	non_canonical	0	0	junction_1	3150.19722588657	4	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGAAGATGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	45884185	45878725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878888_45878943_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
2220	chr8	+	1032	1	ISM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	65864	0	65072	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	NA	False	NA	NA	False	NA	NA	NA	107395846	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107395800_107396900
2221	chr2	+	855	1	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCAGGGCCATCTGTTA	1069	False	NA	NA	False	NA	NA	NA	4995540	4996395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4995500_4996400
2223	chr5	-	2037	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-65	96	multi-exon	FALSE	canonical	0	0	junction_1	0	21	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833620	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5833261_5833325
2224	chr13	-	3581	14	NIC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	-5	intron_retention	FALSE	canonical	3	1612	junction_10	160.614205713327	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTTGGTCAAGGT	NA	False	NA	NA	False	NA	NA	NA	74498358	74470377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
2225	chr4	+	1630	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	795.474788342716	68	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2949	False	NA	NA	False	NA	NA	NA	128887096	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901559_128901877_128902023_128904355
2226	chr4	+	3588	18	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	279	18	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGAGGGCGGGACCGGCA	NA	False	NA	NA	False	NA	NA	NA	135047802	135080482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052496_135054399_135054535_135056314_135056356_135056682_135056831_135059034_135059122_135059471_135059550_135065114_135065392_135067814_135067934_135068157_135068349_135069682_135069885_135071174_135071291_135071809_135071981_135074045_135074172_135074428_135074515_135080406
2227	chr4	-	3639	18	NIC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	-20	-2	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	330.400312926618	13	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCCACTCACATTTATT	NA	False	NA	NA	False	NA	NA	NA	135080482	135047796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135048766_135049600_135049811_135051224_135051373_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
2228	chrUn_JH584304v1	-	3550	4	Intergenic	novelGene_4674	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_2	70.5706895405041	166	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAACAAAAACTACCATAG	NA	False	NA	NA	False	NA	NA	NA	59681	52679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_55702_56985_57152_58563_58836_59591
2229	chr12	+	4522	11	FSM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	22	-17	22	17	multi-exon	FALSE	canonical	3	823	junction_5	70.9532240282286	1291	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTTGATTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	32870355	32903365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_32870626_32880165_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
2230	chr15	-	3936	13	NNC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	0	55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.703194309471	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTATATTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	38519507	38488426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38489548_38489723_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
2231	chr4	-	4323	26	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	187	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	79.2923098414972	50	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	-14	True	NA	NA	False	NA	NA	NA	41124268	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118727_41118931_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
2232	chr7	+	3461	16	ISM	ENSMUSG00000030447.16	ENSMUST00000163845.4	4178	32	55144	-225	325	198	3prime_fragment	FALSE	canonical	3	493	junction_4	50.4439843346613	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGCGTTTGTTCATT	NA	False	NA	NA	False	NA	NA	NA	55547146	55580444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
2233	chr6	-	4982	10	ISM	ENSMUSG00000045962.17	ENSMUST00000203030.3	8163	26	88960	-648	-273	-2	3prime_fragment	FALSE	canonical	3	12	junction_5	2.94811092476036	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACTGTGGGTTGTTCTTT	8038	False	NA	NA	False	NA	NA	NA	119925660	119900933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935
2235	chr1	-	3829	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	30	4	30	-4	multi-exon	FALSE	canonical	3	395	junction_2	27.5	795	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTTGTTCTGTTTCAAG	6302	False	NA	NA	False	NA	NA	NA	37469154	37456168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
2237	chrX	+	3869	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-79	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	312.456235988793	811	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATGACTCAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	95139568	95212155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209649_95209697_95209756_95210075
2238	chr15	-	4683	16	FSM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	-24	1	-24	-1	multi-exon	FALSE	canonical	3	252	junction_15	32.8196418153655	668	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCAGTAGGATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	96597635	96585273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495_96596699_96597288
2240	chr1	+	4392	15	FSM	ENSMUSG00000023150.15	ENSMUST00000186745.2	3315	15	-30	-1047	-30	-3	multi-exon	FALSE	canonical	3	234	junction_7	304.179802157895	45	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAATCCTTGCACTGTGG	NA	False	NA	NA	False	NA	NA	NA	151220298	151240163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
2241	chrX	-	3343	22	Intergenic	novelGene_4084	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCGCGGGAAATAGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	150844961	150799471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150799634_150809230_150809436_150809525_150809767_150810689_150810947_150811034_150811176_150811958_150812001_150816712_150816879_150816973_150817154_150819095_150819245_150819336_150819473_150820363_150820480_150820583_150820693_150824321_150824462_150829652_150829802_150829890_150830045_150830853_150830963_150841772_150841931_150842352_150842507_150842621_150842774_150843969_150844040_150844286_150844398_150844719
2242	chr16	-	3818	14	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.38628820643	13	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	7587	False	NA	NA	False	NA	NA	NA	22258368	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22200428_22200479_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
2243	chr8	+	3807	13	NIC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-2	0	intron_retention	FALSE	canonical	3	740	junction_3	239.57895648176	7	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8825	False	NA	NA	False	NA	NA	NA	120637550	120684296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
2245	chr6	-	2934	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3760	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3640.94175317321	2	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	5129	False	NA	NA	False	NA	NA	NA	122774839	122704784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705020_122705736_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122774760
2247	chr9	+	4607	24	NIC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	0	-5	intron_retention	FALSE	canonical	3	476	junction_1	92.5889956593237	1	84	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTTGTATGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	44290842	44303655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296260_44296414_44296603_44296863_44297003_44298328_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
2249	chr11	+	5423	22	FSM	ENSMUSG00000035152.15	ENSMUST00000018875.13	5625	22	194	8	-26	-8	multi-exon	FALSE	canonical	3	76	junction_14	47.3312733095844	691	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAAAATAAAGTTTGTGG	2153	False	NA	NA	False	NA	NA	NA	83193502	83295853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83255620_83255663_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
2250	chr1	+	4870	31	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	6	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	826.105575711859	1	167	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTATCTATTTGGTTCAT	NA	False	NA	NA	False	NA	NA	NA	185095260	185160551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145429_185145645_185145748_185146523_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156602_185160153
2251	chr10	-	4104	7	NIC	ENSMUSG00000075232.7	novel	3204	8	NA	NA	6	-8	intron_retention	FALSE	canonical	3	315	junction_3	52.4139506450546	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGAGAAAGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	40178176	40163461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40170304_40170712_40170800_40177744
2252	chrX	+	3057	12	Antisense	novelGene_ENSMUSG00000035150.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGAAAATGCTCGGCAG	NA	False	NA	NA	False	NA	NA	NA	93232839	93256252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93234529_93239877_93240049_93240891_93241063_93243318_93243467_93244497_93244591_93246419_93246554_93247554_93247718_93248657_93248749_93252933_93253057_93253141_93253266_93255320_93255388_93256169
2253	chr17	-	2065	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	1	intron_retention	FALSE	canonical	0	0	junction_1	3180.35355896164	138	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884199	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878885_45879446_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
2255	chr10	+	5254	7	ISM	ENSMUSG00000019817.19	ENSMUST00000121766.8	3897	8	-3	-725	0	0	intron_retention	FALSE	canonical	2	16	junction_1	51.418760087043	297	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGTCTTTTCATTTA	3054	False	NA	NA	False	NA	NA	NA	12966575	13007438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_12966769_12967518_12967557_12981598_12981638_12988262_12988295_12992439_12992526_13000599_13000913_13002885
2256	chr4	+	3624	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	719	-2	multi-exon	TRUE	non_canonical	0	0	junction_1	21.221058723196	2	78	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	1645	False	NA	NA	False	NA	NA	NA	145238079	145351909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145238605_145239034_145239640_145343640_145343746_145347127_145347255_145348721_145349754_145350511_145351528_145351695
2258	chr16	-	1146	1	Antisense	novelGene_ENSMUSG00000022797.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	198	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCTTGTTCTTTATGCA	NA	False	NA	NA	False	NA	NA	NA	32451608	32450462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32450500_32451600
2259	chr12	-	2717	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6132.36885713832	184	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTGGAATGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658823_110659020_110659307_110659453_110659597_110659741_110659937_110660144_110660311_110660456_110660769_110661004_110661139_110661485_110661853_110661952_110662115_110662685
2261	chrX	-	4881	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	72	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	189.471623452563	11	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800246	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149787577_149787662_149797016_149797086_149800196
2262	chr6	-	3596	11	FSM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	-33	4270	-33	1053	multi-exon	FALSE	canonical	3	243	junction_10	1157.84085262181	240	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATCCCAACACTAATTGAT	NA	False	NA	NA	False	NA	NA	NA	144994571	144943830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
2263	chr19	+	6840	20	FSM	ENSMUSG00000036097.9	ENSMUST00000096053.5	6249	20	4	-595	4	484	multi-exon	FALSE	canonical	3	153	junction_11	22.2601092848611	214	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTGTCTGGCAACTTTT	1047	False	NA	NA	False	NA	NA	NA	44919593	44972222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44919890_44922550_44922595_44923371_44924106_44926803_44926859_44929897_44930866_44931887_44931959_44936368_44936492_44937410_44937579_44940507_44940611_44947443_44947520_44949172_44949315_44955405_44955509_44955941_44956119_44957475_44957574_44960036_44960125_44961572_44961705_44962046_44962125_44964067_44964155_44967599_44967669_44968994
2264	chr8	-	6051	14	NNC	ENSMUSG00000031523.17	novel	6159	14	NA	NA	-16	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	13.9313617509806	2	125	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAATTGATCATTTGCT	NA	False	NA	NA	False	NA	NA	NA	37081044	37034924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_37037558_37038418_37038593_37039821_37040035_37041106_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046846_37049871_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
2265	chr18	+	3596	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	425.561314147286	1355	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251957	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657_35386883_35386969
2267	chr10	+	2846	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	443.8353689272	5344	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173613	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836_128197151_128197217
2268	chr13	-	4343	21	NNC	ENSMUSG00000021670.15	novel	4425	20	NA	NA	7	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.34956160502	725	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAAGCAGTGGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	96807437	96785469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_96786879_96786958_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
2269	chr7	+	1586	11	NNC	ENSMUSG00000030826.20	novel	917	5	NA	NA	-274	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	130.969614796715	1483	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTGGCTATCATGCTCT	3753	False	NA	NA	False	NA	NA	NA	45224249	45239132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45224314_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
2271	chr11	+	3395	11	NIC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	1431	-5	intron_retention	FALSE	canonical	3	655	junction_4	78.6008269676598	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGCTTGTCTGGATTC	NA	False	NA	NA	False	NA	NA	NA	74790370	74800163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
2272	chr1	+	4645	14	NIC	ENSMUSG00000023150.15	novel	3315	15	NA	NA	-29	-156	intron_retention	FALSE	canonical	3	1145	junction_2	94.9643969411196	40	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTTTCAGAAGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	151220299	151240010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
2273	chr5	-	2901	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	44	17	44	0	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	4022	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	1760	False	NA	NA	False	NA	NA	NA	138170640	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
2274	chr2	-	7034	4	FSM	ENSMUSG00000068130.12	ENSMUST00000109916.8	2922	4	-14	-4098	-14	4098	multi-exon	FALSE	canonical	2	6	junction_3	3.29983164553722	24	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAATTTTATTTTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	150293420	150244962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_150251710_150252860_150252922_150253130_150253258_150293321
2276	chr2	-	3240	28	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.18885257457751	2	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGCACCAGCACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	146919920	146854966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855115_146866425_146866556_146866634_146866746_146867113_146867225_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871547_146871644_146871703_146871786_146871895_146876771_146876817_146878578_146878714_146880086_146880206_146882733_146882870_146883905_146884015_146884092_146884190_146891209_146891308_146891900_146891983_146893632_146893686_146903164_146903236_146903323_146903456_146905150_146905281_146910711_146910774_146916802_146916944_146919396
2278	chrX	+	2762	21	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	24	-477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	701.211266309947	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTAGCCATCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	20529160	20548941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20545982_20548807
2279	chr6	-	4630	17	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-19	149	intron_retention	FALSE	canonical	3	759	junction_13	43.0812731212763	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTGATGTGGGGCGGGC	7886	False	NA	NA	False	NA	NA	NA	124806417	124792233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
2280	chr8	-	4322	14	NNC	ENSMUSG00000033596.6	novel	4443	13	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.5989353023	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCAGTGTCTTCCGCCTGT	5483	False	NA	NA	False	NA	NA	NA	112026867	111997574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111998145_111998279_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
2281	chr17	-	2481	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5	34	5	-34	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTATGCAAAATAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	45884192	45878734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
2282	chr18	+	3348	11	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	247.354502687944	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13105320	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107769_13107832_13109042_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
2283	chr2	+	3463	28	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	39	0	intron_retention	FALSE	canonical	0	0	junction_15	217.25072276798	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146854954	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882813_146883962_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
2284	chr4	+	4038	8	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-78	1444	multi-exon	FALSE	non_canonical	0	0	junction_2	41.6770871323409	3	116	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATCTGAAGTGACTTCC	NA	False	NA	NA	False	NA	NA	NA	147209634	147671099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147449058_147449174_147536170_147536264_147661528_147661587_147665698_147665826_147667290_147667431_147667838
2285	chr2	-	1032	4	NIC	ENSMUSG00000027620.17	novel	699	5	NA	NA	-15	-18	intron_retention	FALSE	canonical	3	90	junction_1	977.365279150477	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTTGAACAGTGCTAAC	NA	False	NA	NA	False	NA	NA	NA	156022173	156019298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_156019827_156020799_156020873_156021096_156021161_156021806
2286	chr2	-	6435	17	ISM	ENSMUSG00000027288.17	ENSMUST00000171215.8	6391	19	7646	-2787	-156	-7	3prime_fragment	FALSE	canonical	3	846	junction_10	115.745882756148	630	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCATTTTGTTATTTGT	6098	False	NA	NA	False	NA	NA	NA	120362695	120337307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075
2287	chr15	-	4029	16	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-9	287	intron_retention	FALSE	canonical	3	2899	junction_7	231.958904406219	5	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGGAGAAAACAGAGTT	NA	False	NA	NA	False	NA	NA	NA	11399696	11383803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
2289	chr17	-	3835	6	NNC	ENSMUSG00000069743.6	novel	3686	5	NA	NA	3	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	18.7360614858086	15	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGAACTTGGTTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	22064737	22035861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22039170_22040050_22040178_22042824_22042873_22059604_22059696_22063404_22063553_22064624
2290	chr14	-	6736	21	NIC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	-11	-1	combination_of_known_splicesites	FALSE	canonical	2	8	junction_11	76.9144167240447	168	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTTTGTATGAAATATT	NA	False	NA	NA	False	NA	NA	NA	26692473	26640945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
2291	chr3	-	3370	20	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	25	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	298.643117970861	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGCAAAAGCCTCTTGCG	NA	False	NA	NA	False	NA	NA	NA	104725592	104702157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104711870_104712215_104712424_104725251
2292	chrX	+	3620	23	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-721	combination_of_known_junctions	FALSE	canonical	3	167	junction_1	147.492463737996	27	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAATCTAAATTTGATTC	NA	False	NA	NA	False	NA	NA	NA	150799471	150844969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
2293	chr19	+	4042	29	NNC	ENSMUSG00000024974.11	novel	4851	29	NA	NA	2	277	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	295.475455660803	1	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGTGTAAATGTGGCCTT	NA	False	NA	NA	False	NA	NA	NA	53588830	53633516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610224_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624975_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
2294	chrX	+	4701	27	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	7720	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	114.397760612418	75	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTAACAGCTAAGCCTT	7898	False	NA	NA	False	NA	NA	NA	159873240	160041199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159873402_159878108_159878263_159894088_159894193_159904019_159904098_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
2295	chr8	+	4159	16	NIC	ENSMUSG00000005410.7	novel	2604	17	NA	NA	-49	1	intron_retention	FALSE	canonical	3	635	junction_1	277.213243230229	51	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGTAGTGCTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	75836147	75854317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
2296	chr3	+	4107	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	-63	-195	-63	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	5	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	NA	False	NA	NA	NA	102927859	102965502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
2297	chr9	+	2190	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5383.59861430995	6803	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTGTGTTTTGTTTT	1870	False	NA	NA	False	NA	NA	NA	59563856	59586653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577780_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
2298	chrX	+	3835	24	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	24	-920	intron_retention	FALSE	canonical	3	535	junction_3	102.4643974316	1	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAGATGCCAACCCCAAC	NA	False	NA	NA	False	NA	NA	NA	150799447	150844770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
2299	chr10	+	5643	34	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	12	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_33	60.9430630422038	183	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	83379816	83432337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034_83431742_83431944
2300	chr19	-	3207	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	510.842781587447	13	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3855	False	NA	NA	False	NA	NA	NA	5345494	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345315
2301	chr9	-	4752	10	NNC	ENSMUSG00000046111.19	novel	4144	13	NA	NA	979	10007	intron_retention	TRUE	non_canonical	0	0	junction_1	0	30	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAAATATTAGGCAGGCA	NA	False	NA	-64	True	NA	NA	NA	15228274	15218203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_15218287_15219023_15219116_15219818_15220210_15221152_15221331_15221651_15221706_15222822_15222989_15224066_15225323_15225522_15227128_15227292_15227717_15227771
2302	chr4	+	2906	7	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078497.10	novel	1488	4	NA	NA	2	2578	multi-exon	FALSE	non_canonical	0	0	junction_1	129.658097403217	1100	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	2371	False	NA	NA	False	NA	NA	NA	147445761	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147445910_147576859_147577009_147591995_147592098_147595209_147595337_147596801_147597216_147597970_147598436_147599020
2303	chr1	+	3181	13	NNC	ENSMUSG00000116048.2	novel	3267	13	NA	NA	10062	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	370.198933007647	2	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTAGTCCTCTTTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	93416844	93437456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93416877_93417525_93417558_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
2304	chr11	+	3962	14	NIC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	3	-5	intron_retention	FALSE	canonical	3	655	junction_8	71.9702436867582	4	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGCTTGTCTGGATTC	NA	False	NA	NA	False	NA	NA	NA	74788899	74800163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
2305	chr6	-	5553	7	ISM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	122	292	69	-292	intron_retention	FALSE	canonical	3	2400	junction_5	112.182019751632	12	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTGTGTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	83294466	83282964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343
2306	chr5	+	4220	11	NNC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	12894	23147	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	8.4	1277	36	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACAGCTCGCGCGCCAC	NA	False	NA	NA	False	NA	NA	NA	4130366	4154457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_4131176_4131341_4133307_4136462_4136636_4137782_4137874_4141844_4142037_4142380_4142507_4149122_4149260_4150144_4150272_4151177_4151355_4152927_4153027_4154133
2308	chr18	-	4301	24	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	366.055998897604	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60981979	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949068_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
2309	chr6	-	4126	30	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	44	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	132.732626205666	3	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3537	False	NA	NA	False	NA	NA	NA	125168522	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125161480_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
2310	chr4	+	4265	10	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-31340	1451	multi-exon	TRUE	non_canonical	0	0	junction_1	117.579077671892	72	129	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGACTTCCAGGTTCA	NA	False	NA	NA	False	NA	NA	NA	147545533	147671106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147545664_147576840_147577015_147578848_147578931_147592042_147592098_147595209_147595337_147596801_147597083_147599008_147599274_147599353_147599362_147667828_147669987_147670121
2311	chr8	-	4104	3	ISM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-54	3	-54	-3	intron_retention	FALSE	canonical	3	4280	junction_2	24.5	78	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43760071	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43749574_43753664_43753743_43757512
2312	chr4	-	2915	12	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	1425	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	364.566492251725	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTAAATTTAAGAACATT	5224	False	NA	NA	False	NA	NA	NA	135068348	135047812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067792_135067934_135068157
2313	chr5	+	1101	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	-38	-1158	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5618.27911819981	17	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTGAATCATCCCTTGC	437	False	NA	NA	False	NA	NA	NA	129097227	129100229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099461_129099610_129099837
2314	chr16	-	3209	22	FSM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	6	303	6	-85	multi-exon	FALSE	canonical	3	1247	junction_21	231.829967404665	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACCATGGCCAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	91443834	91418376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
2315	chr5	-	2094	14	Antisense	novelGene_ENSMUSG00000093413.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACCTCGGCCTTCGGAT	3868	False	NA	NA	False	NA	NA	NA	129875198	129864544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129869004_129869080_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
2318	chr1	+	4424	29	NNC	ENSMUSG00000041763.15	novel	4649	30	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	146.168527804067	1	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAATTGGTCTTAATTT	3344	False	NA	NA	False	NA	NA	NA	43973206	44042160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_43973414_43979269_43979399_43988471_43988568_43990328_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022481_44022673_44022757_44024575_44024615_44030422_44030520_44031431_44031555_44038787_44038996_44040478_44040599_44041263
2319	chr4	-	5046	10	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	21	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	401.980375419276	28	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTTATGTTTGAGTG	2513	False	NA	NA	False	NA	NA	NA	129229142	129200889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203672_129212858_129213347_129213567_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
2320	chr2	-	3887	29	FSM	ENSMUSG00000027185.16	ENSMUST00000028608.13	3879	29	-10	2	-10	-2	multi-exon	FALSE	canonical	3	271	junction_25	29.5459474413003	1021	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCCTGCAGTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	103591625	103551602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
2321	chr19	+	6808	5	FSM	ENSMUSG00000049164.8	ENSMUST00000050092.7	6840	5	27	5	27	-1	multi-exon	FALSE	canonical	3	75	junction_1	19.3196790863617	148	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGAGTTTCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	40883175	40906386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_40883235_40885527_40885610_40896502_40896648_40899476_40899554_40899941
2323	chr15	-	4629	34	NIC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-5	-24	intron_retention	FALSE	canonical	3	484	junction_23	50.0818246909094	1	59	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGTATAAAACACAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	76491716	76480040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485538_76485603_76485699_76485773_76485826_76485926_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
2324	chr5	-	3278	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963486	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939425_135939699_135940506_135963176
2326	chr18	-	3100	13	NIC	ENSMUSG00000024587.11	novel	1784	15	NA	NA	0	-11	intron_retention	FALSE	canonical	3	8	junction_3	1581.74968169921	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGTTAAAAAACAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	64649586	64632739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64634506_64634814_64634947_64636578_64636693_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
2327	chr9	+	2333	11	Fusion	ENSMUSG00000032294.18_ENSMUSG00000111394.2	novel	1017	6	NA	NA	121	-3	multi-exon	FALSE	canonical	2	37	junction_1	5302.74464404991	4	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	777	False	NA	NA	False	NA	NA	NA	59565646	59586655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_59565833_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
2329	chr13	-	4083	19	NIC	ENSMUSG00000021670.15	novel	4425	20	NA	NA	-20	-413	intron_retention	FALSE	canonical	3	390	junction_18	36.0374034087425	4	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTTTTGTATAAATAATAA	NA	False	NA	NA	False	NA	NA	NA	96807403	96785887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
2331	chr17	-	1846	12	FSM	ENSMUSG00000072082.8	ENSMUST00000234381.2	1721	12	-15	-110	-15	110	multi-exon	FALSE	canonical	3	665	junction_11	78.5254604181618	1	27	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTATTTATTTATT	8722	False	NA	NA	False	NA	NA	NA	24470336	24449889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
2332	chr14	+	3732	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	49	-2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	114.037154426933	97	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32044024	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044134_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
2333	chr13	-	2614	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	2597.4972687617	18	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	4800	False	NA	NA	False	NA	NA	NA	58550281	58538955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541056_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
2334	chr19	+	4939	21	Antisense	novelGene_ENSMUSG00002075125.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	204	67	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGGGGGGAAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	60749554	60770796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_60750743_60751502_60751705_60752471_60752670_60754769_60755433_60756011_60756104_60757147_60757329_60758299_60758457_60759451_60759576_60760081_60760196_60760530_60760635_60761128_60761478_60761944_60762127_60762334_60762454_60763728_60763827_60764185_60764296_60765064_60765238_60766378_60766596_60767818_60767998_60769793_60769962_60770329_60770454_60770599
2336	chr1	+	4530	5	NIC	ENSMUSG00000026280.18	novel	4186	12	NA	NA	-4832	-1183	intron_retention	FALSE	canonical	3	301	junction_2	18.728320800328	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAAGTCTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	93707232	93717149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93708634_93712133_93712213_93712474_93713689_93714232_93714327_93715407
2337	chr18	+	3731	13	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	32	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	446.329070181283	10	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCATGTTGATTGGTTGGT	NA	False	NA	NA	False	NA	NA	NA	35695303	35724480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695346_35704895_35706029_35711920_35712071_35712318_35712369_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
2338	chr12	+	3437	6	NIC	ENSMUSG00000021134.18	novel	2720	7	NA	NA	0	3	intron_retention	FALSE	canonical	3	562	junction_1	554.001299637465	16	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGCTTTTGGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	80992305	80997274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992573_80993349_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
2340	chr6	-	3259	9	NNC	ENSMUSG00000053907.11	novel	1400	9	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	273.704876418013	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAACTGTGTCTATTAC	NA	False	NA	NA	False	NA	NA	NA	72416539	72409785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72410551_72410674_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
2341	chr8	-	3189	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	285	0	-48	0	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	263	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86026146	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
2342	chr18	-	3558	13	NIC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	0	-1	intron_retention	FALSE	canonical	3	3478	junction_12	555.638521582752	32	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAAAACACTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	64649586	64632729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
2343	chr6	-	5271	19	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	17	-1	intron_retention	FALSE	canonical	0	0	junction_1	131.766125117175	80	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCAGTGTGTGATTGGA	9415	False	NA	NA	False	NA	NA	NA	82751418	82702006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82703228_82703451_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
2344	chr11	-	4225	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	168	0	37	0	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	1	118	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418658	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
2345	chrX	+	3215	24	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-19	-477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	816.861435565992	1	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTAGCCATCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	20524640	20548941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538667_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
2349	chr1	+	7354	51	FSM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	123	3	-11	3	multi-exon	TRUE	canonical	3	414	junction_6	73.7537117710017	516	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCACTGTTTTCTTCATT	NA	False	NA	NA	False	NA	NA	NA	150269123	150325683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
2350	chr3	+	674	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	41	272	-16	0	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	3413	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGATATGTGTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	10077648	10081395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
2351	chrUn_JH584304v1	-	5032	5	Intergenic	novelGene_4633	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	296	junction_1	233.283491700549	2	59	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTAATAAAGTACTTCGAG	NA	False	NA	NA	False	NA	NA	NA	59658	52217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_58836_59591
2353	chr11	-	5727	19	NNC	ENSMUSG00000020687.14	novel	5425	19	NA	NA	10	212	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_12	67.1737428493832	14	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAATCCAATGGTAA	2076	False	NA	NA	False	NA	NA	NA	104441436	104393358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417882_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441303
2354	chr4	-	3398	7	Antisense	novelGene_ENSMUSG00000078496.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.372677996249965	2	101	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTTAAACCGCGGAATT	NA	False	NA	NA	False	NA	NA	NA	147600512	147533640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147533784_147536168_147536261_147578829_147578936_147592040_147592096_147595207_147595336_147596800_147597618_147598455
2355	chr4	+	4176	28	Intergenic	novelGene_1825	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	108	8	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTACAAAGCGGCGGC	3133	False	NA	NA	False	NA	NA	NA	41194335	41275099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41195247_41195333_41195528_41195609_41195672_41195744_41195852_41195941_41196042_41196325_41196532_41196727_41196808_41199216_41199266_41199493_41199585_41199714_41199903_41201463_41201534_41202273_41202460_41203533_41203573_41205523_41205740_41206154_41206330_41206837_41207105_41209352_41209570_41211704_41211895_41216565_41216636_41218312_41218362_41221553_41221622_41223355_41223459_41226278_41226334_41227197_41227277_41229694_41229849_41233603_41233718_41235518_41235594_41275038
2356	chr3	+	3741	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-3	-7	intron_retention	FALSE	non_canonical	0	0	junction_7	279.992201057567	1194	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCTTAACTGTATTTTC	NA	False	NA	NA	False	NA	NA	NA	102965660	102975215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102973428_102974081
2357	chr11	-	3351	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9023	-3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_14	531.473644101944	743	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTTATCTGCATTCAAG	401	False	NA	NA	False	NA	NA	NA	106615243	106545046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106592021_106592121_106605727_106605755_106605844_106606011_106615196
2358	chr12	+	3789	4	Antisense	novelGene_ENSMUSG00000113443.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	23.7907545067406	130	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGTATTTGGTGGT	NA	False	NA	NA	False	NA	NA	NA	20274198	20296811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_20274297_20291589_20291717_20291916_20291978_20293308
2359	chr6	-	3957	24	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-10	0	intron_retention	TRUE	non_canonical	0	0	junction_23	141.223414949706	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	13	True	NA	NA	False	NA	NA	NA	29609828	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364_29609475_29609710
2360	chr15	-	3483	3	NIC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	7	-1	intron_retention	FALSE	canonical	3	2313	junction_2	18.5	138	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACAGTGAGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	38300943	38294660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_38297772_38297865_38298097_38300802
2361	chr7	-	6804	8	NNC	ENSMUSG00000044452.11	novel	6693	7	NA	NA	4	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	29.3542751466929	9	74	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAATAAATTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	35502424	35471796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35499232_35499363_35500862_35500954_35502258
2362	chr17	-	6512	38	FSM	ENSMUSG00000024251.11	ENSMUST00000047524.10	7784	38	-119	1391	-30	70	multi-exon	FALSE	canonical	2	39	junction_31	15.529655412283	146	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGGGTATGTTTGATTC	NA	False	NA	NA	False	NA	NA	NA	84773663	84498894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771930_84773521
2363	chr7	-	6231	14	FSM	ENSMUSG00000066571.14	ENSMUST00000108074.8	6224	14	-7	0	-7	0	multi-exon	FALSE	canonical	3	49	junction_13	29.0706138861218	280	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTATCTTTTTTAAATT	9801	False	NA	NA	False	NA	NA	NA	34012983	33936131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126_33985379_34012911
2364	chr2	+	4018	16	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-46	-3	intron_retention	FALSE	canonical	1	31	junction_4	407.377935364966	11	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAACGATGTCCTTATGT	NA	False	NA	NA	False	NA	NA	NA	84867531	84877447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870686_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
2365	chr7	-	3873	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	0	4	0	-4	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	1023	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACTCTGGTGTCATCTTC	NA	False	NA	NA	False	NA	NA	NA	28661765	28592676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
2366	chr9	+	3910	21	NNC	ENSMUSG00000032115.15	novel	4489	26	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.728314018182	3	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTGTATGTGTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	44290928	44303657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291025_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
2367	chr5	-	2051	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-14	-96	-14	96	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833569	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
2368	chr18	+	3549	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	209	5	-140	-5	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	112	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTTCTTATGGCTACA	NA	False	NA	NA	False	NA	NA	NA	13105188	13126002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
2370	chr17	-	1535	9	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	34	58	intron_retention	FALSE	non_canonical	0	0	junction_1	4290.31403279527	2	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAGGACGAGGAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	45884145	45879885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879943_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882094_45882365_45882546_45882690_45882838_45884092
2371	chr15	-	2961	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-110	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	711.346005041772	17	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283905	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685_81283734_81283775
2372	chr4	+	1909	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	-72	-709	-72	709	mono-exon	FALSE	NA	NA	NA	NA	NA	38339	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	103420526	103422435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_103420500_103422400
2373	chr4	-	4516	27	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	-4	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.7531464003093	75	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTACCTGACTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	41124459	41114432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114542_41114622_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
2374	chr18	+	3567	17	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	938	junction_11	96.2321412003287	28	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGGATTCCAAATTTAG	6237	False	NA	NA	False	NA	NA	NA	34758047	34765856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
2375	chr15	-	3926	14	NIC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	1	-5	intron_retention	FALSE	canonical	3	5069	junction_9	549.323338460614	8	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTAGATGGTTATGCTTT	378	False	NA	NA	False	NA	NA	NA	36609216	36595909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
2376	chr12	+	3675	6	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	1001	6	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	240.979999170056	17	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCGTTGTCTGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	86517891	86568408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86518093_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
2377	chr13	+	4376	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	11	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	465.930286780735	1	71	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835616	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856029_49856642_49856739_49857746_49857864_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
2380	chr11	+	4377	10	NIC	ENSMUSG00000017421.19	novel	2245	11	NA	NA	16	-114	intron_retention	FALSE	canonical	3	852	junction_8	70.3167436990966	20	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGACAAAAATTTATGCCT	NA	False	NA	NA	False	NA	NA	NA	80274172	80286957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80285358_80285927_80286088_80286215
2383	chr18	+	4806	10	FSM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	-11	-2943	-3	-2	multi-exon	FALSE	canonical	3	60	junction_6	337.084266125157	44	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTTTGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	68433459	68457920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388
2384	chrX	+	4652	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14631	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	105.553747446502	239	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCAATTAACAGCTAAGC	4662	False	NA	NA	False	NA	NA	NA	159921894	160041196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922190_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
2385	chr15	-	2836	10	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-110	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	804.274414197874	9	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCCATTTGTTAGCCTG	NA	False	NA	NA	False	NA	NA	NA	81283905	81247860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249792_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
2387	chr18	-	3939	17	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	-24	-631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.79244534557	47	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGTGAACCTTTTATCAA	-24	True	NA	NA	False	NA	NA	NA	10030105	9993696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9994757_9994876_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
2388	chr14	-	5979	13	NIC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	49	-374	intron_retention	FALSE	canonical	0	0	junction_2	133.786106237614	5	76	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATGACTTTAAGTAGAAA	NA	False	NA	NA	False	NA	NA	NA	67953010	67914177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_67915472_67917610_67917780_67931074_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
2389	chr10	-	2760	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	881.37059826607	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGTAGCTTGTTTGTGG	NA	False	NA	NA	False	NA	NA	NA	86541326	86526604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534532_86537649_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
2390	chr11	+	2983	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	5	1932	0	1190	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	1302	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAACACTTCTTGGACCTTC	NA	False	NA	NA	False	NA	NA	NA	4110354	4130609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
2392	chr13	-	4080	8	NIC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-5	-11	intron_retention	FALSE	canonical	3	2476	junction_5	479.670550205757	79	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGATTTTCAGCCAAGGTC	NA	False	NA	NA	False	NA	NA	NA	100922999	100915168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100920156_100921964_100922127_100922240_100922412_100922889
2393	chrX	+	4648	6	NIC	ENSMUSG00000073125.11	novel	3780	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	1084	junction_1	254.431444597558	14	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72235816	72246536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72235856_72237775_72237913_72238605_72241992_72243351_72243451_72245455_72245552_72245645
2394	chr19	+	3638	24	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	4151	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	275.389780476557	29	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	6068	False	NA	NA	False	NA	NA	NA	8879639	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988_8893560_8893638
2395	chr11	+	3478	14	NIC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	29	-7	intron_retention	FALSE	canonical	3	655	junction_7	78.2339837475873	90	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACTGGCTTGTCTGGAT	NA	False	NA	NA	False	NA	NA	NA	74788968	74800161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
2396	chr1	-	4181	26	NNC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-1	-1864	at_least_one_novel_splicesite	FALSE	canonical	1	24	junction_22	472.380229899601	79	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAAAATGCTAATTTGTG	NA	False	NA	NA	False	NA	NA	NA	55066554	55026195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55026652_55027097_55027315_55029461_55029619_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55054027_55054084_55055534_55055650_55055937_55056043_55058392_55058560_55066497
2397	chr18	+	5840	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	1910	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_13	366.155817706392	3	107	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6432	False	NA	-90	True	NA	NA	NA	77126250	77243406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77239655
2398	chr5	+	4005	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	756.390304891154	1	131	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTGTATTTTTAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	108208603	108256853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242119_108246991_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
2400	chr8	-	4043	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21249	-5	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	171.228765106801	554	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGTGAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	81585876	81491073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789_81502880_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
2401	chr17	-	2432	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5	83	5	-83	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	3	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATGTATTGTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
2402	chr17	+	3750	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	-1173	20	11	-20	multi-exon	FALSE	canonical	3	2767	junction_1	286	222	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313384	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_37315796_37316941_37317087_37320310
2406	chr11	-	511	3	ISM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	6968	9	1173	-8	3prime_fragment	FALSE	canonical	3	18443	junction_2	655	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTAGCACTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	33106104	33102518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002
2407	chr1	+	3233	13	NIC	ENSMUSG00000026276.21	novel	477	6	NA	NA	5	-528	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	275.56259371612	2494	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTAGTCCTCTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	93406949	93437454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93407037_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
2408	chr19	+	3695	23	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-11	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	277.185355086412	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	1882	False	NA	NA	False	NA	NA	NA	8875453	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8892092_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
2409	chr10	+	2723	18	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4951	10656	multi-exon	FALSE	non_canonical	0	0	junction_1	0	163	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCGCGCGCAGGTCGGG	NA	False	NA	NA	False	NA	NA	NA	86526703	86541326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_86526995_86527552_86527611_86528001_86528159_86528248_86528329_86529240_86529378_86529777_86530026_86530212_86530480_86531336_86531405_86531521_86531602_86531689_86531830_86532584_86532698_86534180_86534305_86534449_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540260_86541169
2410	chr10	+	2881	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	43	2	-33	-2	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	6122	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173645	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
2411	chr2	+	4152	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	2	-671	2	4	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	1411	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	2710	False	NA	NA	False	NA	NA	NA	152689899	152737245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
2413	chr5	+	6957	64	FSM	ENSMUSG00000029414.12	ENSMUST00000031366.12	6961	64	0	4	0	-2	multi-exon	FALSE	canonical	3	266	junction_8	72.5550989140863	279	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATGTTGGTTTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	123887788	123959652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_123887888_123891885_123892061_123893736_123893858_123895861_123895978_123896505_123896585_123897083_123897162_123898395_123898431_123898665_123898780_123900575_123900670_123901857_123901911_123902177_123902294_123903059_123903115_123903974_123904074_123905832_123905877_123905981_123906048_123906354_123906431_123907675_123907802_123907915_123908006_123909150_123909205_123910148_123910211_123911999_123912112_123913765_123913910_123914455_123914513_123914601_123914704_123916094_123916212_123916307_123916452_123917690_123917790_123919012_123919117_123919208_123919309_123919716_123919852_123920904_123921025_123922243_123922317_123923472_123923541_123924097_123924379_123924951_123925125_123925569_123925668_123927080_123927220_123928177_123928235_123928955_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
2415	chr8	+	4988	24	FSM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	9	-683	9	683	multi-exon	FALSE	canonical	3	576	junction_9	55.7196601685668	624	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACATTTTAAGCATTTTT	NA	False	NA	NA	False	NA	NA	NA	108163005	108285910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
2418	chr10	+	2703	13	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	10	2	intron_retention	FALSE	non_canonical	0	0	junction_4	499.01243443648	3	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1571	False	NA	NA	False	NA	NA	NA	79690448	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695255_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
2420	chr3	-	3838	28	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	-1	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	301.046369059205	1	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAGAAAAAAAAAACAAACC	3549	False	NA	NA	False	NA	NA	NA	89959780	89907617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946248_89952169_89952239_89955076_89955207_89959761
2421	chr7	-	2959	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-25	-456	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	605.9638520572	4	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165555	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147155_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
2423	chr5	+	5494	17	NIC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	2	2	intron_retention	FALSE	canonical	3	458	junction_5	43.5488231758333	7	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTCAGACTCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	45827262	45857417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45851269_45852995_45853887_45856182_45856253_45857189
2424	chrX	+	3213	24	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	85	469	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	961.979423947466	1	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTAAATCCCAATAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	20529221	20548913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535451_20537001_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547343_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
2426	chr15	-	2403	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	408	6	408	-6	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTAGATGGTTATGCTT	785	False	NA	NA	False	NA	NA	NA	36608809	36595910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
2427	chrX	-	3221	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3387	14	3358	0	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	1266	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227934	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
2429	chr18	+	3625	14	ISM	ENSMUSG00000037236.17	ENSMUST00000235199.2	3107	15	9469	-666	-13	-15	3prime_fragment	FALSE	canonical	3	826	junction_1	180.667762029329	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAATAAAAAAAAAAAAAAC	1750	False	NA	NA	False	NA	NA	NA	35704966	35724457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
2430	chr2	+	3793	21	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	193.045616370846	636	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7180	False	NA	NA	False	NA	NA	NA	29779783	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
2432	chr11	-	3268	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	496.463152935061	1440	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	352	False	NA	NA	False	NA	NA	NA	106615292	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
2434	chr15	+	3925	16	NIC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	1	intron_retention	FALSE	canonical	3	1727	junction_8	137.285817022574	5	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGCCTGAGTGATTGAT	NA	False	NA	NA	False	NA	NA	NA	81756708	81799335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81788208_81788963_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
2435	chr7	+	3576	8	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	3	-248	intron_retention	FALSE	canonical	1	3	junction_1	250.098103200504	36	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868046	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868133_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
2437	chrX	+	2745	22	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	843.604642976077	25	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGATGTAGCCATCCTGG	NA	False	NA	NA	False	NA	NA	NA	20524659	20548939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542156_20547061_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
2438	chr14	-	5494	4	NIC	ENSMUSG00000068245.15	novel	2973	9	NA	NA	8998	-64	intron_retention	FALSE	canonical	3	330	junction_3	26.5497436689865	26	72	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATTAGGTATCTTTTC	4107	False	NA	NA	False	NA	NA	NA	59593861	59584919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_59586838_59588595_59590831_59591756_59591825_59592588
2439	chr2	-	2527	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-12	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5322.29797440871	56	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCCCAATGTTGGCTAT	3724	False	NA	NA	False	NA	NA	NA	154734763	154713395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730434_154734550
2442	chr19	-	3751	28	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24164	-6541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	79	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAGAGAGGCCAGGCGC	NA	False	NA	NA	False	NA	NA	NA	10607182	10582936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584208_10584372_10585171_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604576_10604916_10605021_10605123_10605229_10605788_10605910_10606439_10606708_10607083
2443	chr18	-	4350	24	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	350.80973036493	4	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60982004	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949068_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
2444	chr16	+	3496	17	NIC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	31	2	combination_of_known_splicesites	FALSE	canonical	2	35	junction_2	258.15641455327	131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598607	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_13598704_13599856_13599963_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
2445	chr6	+	5011	35	NNC	ENSMUSG00000038759.16	novel	6412	43	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	88.4344859458021	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGTGTGGTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	35154552	35224533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191732_35204639_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
2446	chr11	+	3768	10	Antisense	novelGene_ENSMUSG00000018428.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGCTACCCTTTCAGAGT	3832	False	NA	NA	False	NA	NA	NA	88722305	88737578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_88722651_88723127_88723194_88723964_88724042_88725487_88725554_88725903_88726057_88727837_88728016_88729755_88729883_88730449_88730578_88731994_88732127_88735082
2447	chr18	-	3146	13	NIC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	1019	-3	intron_retention	FALSE	canonical	3	4499	junction_2	344.797283438641	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACCAAAACACTTTGC	NA	False	NA	NA	False	NA	NA	NA	64648478	64632731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396
2448	chr13	-	4442	34	Antisense	novelGene_ENSMUSG00000077360.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTGTTACACGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	49887507	49835740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_49836119_49840859_49840977_49841624_49841796_49842005_49842117_49843920_49844004_49844966_49845086_49846497_49846646_49855317_49855405_49855960_49856023_49856640_49856737_49857741_49857868_49858306_49858395_49859259_49859359_49860151_49860288_49861886_49861955_49863051_49863252_49865226_49865283_49868286_49868371_49869157_49869304_49871379_49871501_49873051_49873144_49874554_49874629_49875615_49875741_49876141_49876247_49876466_49876551_49878091_49878267_49878694_49878805_49879628_49879729_49880600_49880776_49882130_49882239_49883488_49883614_49884890_49885036_49885813_49885967_49887132
2450	chr17	+	3845	14	NNC	ENSMUSG00000062691.11	novel	602	5	NA	NA	3140	16759	intron_retention	FALSE	non_canonical	0	0	junction_1	0	28	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGCTTTACGGTGACGC	NA	False	NA	NA	False	NA	NA	NA	79227268	79244494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79227445_79227975_79228060_79228150_79228207_79229059_79230001_79230664_79230759_79231865_79231945_79233345_79233412_79233511_79233622_79234303_79234353_79236708_79236793_79238735_79238925_79239537_79239773_79242005_79243499_79244305
2451	chr2	-	4328	18	NIC	ENSMUSG00000027620.17	novel	2744	18	NA	NA	0	-4	intron_retention	FALSE	canonical	3	117	junction_15	891.945721190574	10	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCCACAAGAAAATTTTCG	NA	False	NA	NA	False	NA	NA	NA	156022069	155989172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156020873_156021096_156021161_156021806
2452	chr15	-	4093	12	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	6	290	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.944696405324	15	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAACTCCATCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	38519501	38488191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490624_38491874_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
2453	chr5	-	3874	19	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	2	-45	intron_retention	FALSE	canonical	3	48	junction_17	419.554775776112	1388	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGAATTCTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	149559801	149540053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149555756_149555876_149557294_149557353_149559434
2454	chr9	+	4229	27	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	176.012304572569	67	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTATGTGTTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	44290855	44303659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285_44303256_44303382
2455	chr5	-	3232	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	-3	intron_retention	TRUE	non_canonical	0	0	junction_1	462.5	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCGGCGGTGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937400_135937684_135940506_135963176
2456	chr1	+	4340	23	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	-34	-2	intron_retention	FALSE	canonical	0	0	junction_10	147.996712326673	1197	52	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGGCCTCCTGACTGT	9336	False	NA	NA	False	NA	NA	NA	87603926	87648222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628285_87628469_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
2457	chr2	+	4151	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	-1	-667	-1	0	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	1425	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	2707	False	NA	NA	False	NA	NA	NA	152689896	152737241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
2458	chr11	+	4931	16	NNC	ENSMUSG00000020463.16	novel	5125	16	NA	NA	94	-18	intron_retention	FALSE	canonical	2	24	junction_14	78.2544567420923	232	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTATGTGAAACAGATT	NA	False	NA	NA	False	NA	NA	NA	29122983	29170779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163675_29163797_29168455
2459	chr9	+	3939	4	FSM	ENSMUSG00000007656.14	ENSMUST00000169492.8	3963	4	17	7	17	-7	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	960	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAATATGCAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	74944912	74967588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
2462	chr5	-	3474	7	NNC	ENSMUSG00000029328.16	novel	1477	8	NA	NA	-15	-10	intron_retention	TRUE	non_canonical	0	0	junction_6	468.689307181918	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATAAAATCTCAGTTAA	NA	False	NA	NA	False	NA	NA	NA	100186769	100181445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100184055_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432_100186497_100186546
2463	chr19	-	5598	32	Antisense	novelGene_ENSMUSG00000089151.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	261	10	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAACCCTGGGAGTGGGC	NA	False	NA	NA	False	NA	NA	NA	34953147	34899744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_34899834_34902020_34902172_34906259_34906343_34906422_34906542_34907081_34907221_34908952_34909144_34911818_34911850_34912306_34912529_34913021_34913136_34914174_34914249_34914337_34914485_34914713_34914872_34915650_34915939_34917185_34917328_34917492_34917632_34918612_34918841_34919905_34919941_34924981_34925129_34927141_34928375_34928890_34929028_34930268_34930389_34932109_34932171_34933348_34933474_34934813_34934942_34936811_34936971_34943445_34943624_34945515_34945625_34947317_34947516_34949794_34949897_34950256_34950408_34951825_34951970_34952891
2464	chr19	+	3714	1	FSM	ENSMUSG00000093315.3	ENSMUST00000175574.3	61	1	-31	-3622	-31	3622	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCAAAATGTCTCGTG	NA	False	NA	NA	False	NA	NA	NA	44291578	44295292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44291600_44295300
2466	chr17	-	3675	7	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	-103	-12	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_6	14.4501057281791	121	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAGTTGAACTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	22533921	22504863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507883_22508749_22508877_22511388_22511437_22528185_22528296_22528485_22528579_22532217_22532302_22533727
2467	chr11	-	5994	22	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-104	-6	intron_retention	FALSE	non_canonical	0	0	junction_7	308.333020775719	2805	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAACATTTTGCTGCTTCG	NA	False	NA	NA	False	NA	NA	NA	97078811	97050545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056950_97058371_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078210_97078274_97078371
2468	chr5	-	2027	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-78	96	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833633	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5833461_5833548
2471	chr12	+	5401	1	Intergenic	novelGene_4337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTTTCCGTGTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	23749642	23755043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_23749600_23755000
2472	chr7	-	3900	22	NIC	ENSMUSG00000054808.16	novel	3530	22	NA	NA	50	-13	combination_of_known_splicesites	TRUE	canonical	3	7	junction_14	366.524796301498	787	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAGAAGGACTCTGGT	NA	False	NA	NA	False	NA	NA	NA	28661715	28592685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327_28609414_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
2473	chr6	-	3927	25	NNC	ENSMUSG00000012535.15	novel	3590	24	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	212.155455975094	14	32	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTTTTTATTTCCCTT	14	True	NA	NA	False	NA	NA	NA	29609611	29540823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541109_29541318_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29599538_29599698_29609364
2474	chr14	+	4588	42	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	199.574431225666	11	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACTCTGATTGTCGTTG	NA	False	NA	NA	False	NA	NA	NA	47886771	47974020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887855_47888029_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
2477	chr6	-	2254	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	131	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1217.36272737422	24	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8616	False	NA	NA	False	NA	NA	NA	145021779	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945901_144950114_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
2480	chr14	+	4281	40	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	7	-2	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	159.321878224553	4	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886779	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
2481	chr3	+	3650	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	2	-2140	2	0	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	2204	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	135143996	135173959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
2482	chr11	-	3570	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	58	3	12	-3	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	853	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGAATTTTGTCTTTT	1394	False	NA	NA	False	NA	NA	NA	20062855	20012306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
2483	chrX	+	3530	11	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-39	-3	intron_retention	FALSE	canonical	3	3075	junction_4	295.922979844418	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTCTGTGCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473301	100492194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
2484	chr9	+	2173	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5360.55493862343	41	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCACCTGTGTTGTGTTT	1885	False	NA	NA	False	NA	NA	NA	59563871	59586647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59578991_59579212_59579357_59582850_59583018_59585326_59585509_59586010
2485	chr17	-	2004	10	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	6	614	6	469	5prime_fragment	FALSE	canonical	3	9221	junction_3	841.209975108606	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACCCTGCGGCAGAAGGC	NA	False	NA	NA	False	NA	NA	NA	45884191	45879314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
2486	chr6	-	2904	10	NNC	ENSMUSG00000004980.17	novel	1542	11	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	2842.01122055804	8	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTACTTGGTGTAATGC	NA	False	NA	NA	False	NA	NA	NA	51446806	51438104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51440474_51441068_51441192_51442131_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
2488	chr12	+	3781	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	31	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	245.866946854504	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGAGTCGTTCATGC	NA	False	NA	NA	False	NA	NA	NA	86516921	86568393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86516972_86517057_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
2489	chrX	-	4855	15	FSM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	13	0	5	0	multi-exon	TRUE	canonical	3	145	junction_7	16.3001189428489	221	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACTGTAATGGCTTATT	NA	False	NA	NA	False	NA	NA	NA	112095201	111950289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
2490	chr2	-	4361	20	NIC	ENSMUSG00000039671.19	novel	5232	23	NA	NA	33	1	combination_of_known_splicesites	FALSE	canonical	3	58	junction_8	168.338186851215	418	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	165740903	165626073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
2491	chr11	-	3243	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9044	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_15	495.174744250704	6	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	380	False	NA	NA	False	NA	NA	NA	106615264	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605901_106606011_106615196
2492	chr15	+	6872	1	FSM	ENSMUSG00000115318.2	ENSMUST00000227474.2	2906	1	0	-3966	0	3966	mono-exon	FALSE	NA	NA	NA	NA	NA	1	157	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTGCCCCCCTCCCACTG	NA	False	NA	NA	False	NA	NA	NA	33831593	33838465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_33831600_33838500
2495	chr14	+	4486	42	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	3	145	junction_38	176.407304781434	516	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886780	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47973556
2496	chr4	-	3127	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-18	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	105.051839055244	2	87	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	9505	False	NA	NA	False	NA	NA	NA	147894263	147838432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845736_147859971_147860286_147891546_147891641_147893153_147893289_147894124
2497	chr15	-	4033	16	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-17	283	intron_retention	FALSE	canonical	3	2899	junction_7	231.958904406219	7	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTCTAAGGAGAAAACAG	NA	False	NA	NA	False	NA	NA	NA	11399704	11383807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
2498	chr5	+	3731	13	NIC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	376	-14	intron_retention	FALSE	canonical	3	3618	junction_3	480.048232530394	24	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864437	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
2499	chr1	-	3717	16	NIC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-29	0	intron_retention	FALSE	canonical	3	2842	junction_6	233.704143452072	8	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287430	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
2500	chr12	+	3767	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	2040	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516905	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565981_86566099
2501	chrX	+	2795	20	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-480	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	795.588383114196	42	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20529169	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542301_20547602_20547754_20548141_20548244_20548347_20548449_20548616
2502	chr1	-	4040	24	FSM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	48	2159	7	2	multi-exon	FALSE	canonical	3	518	junction_15	35.6964730086209	205	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCTGCATACTCTAAGGT	NA	False	NA	NA	False	NA	NA	NA	135358189	135312208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
2503	chr15	-	4144	12	NNC	ENSMUSG00000023022.15	novel	4243	11	NA	NA	5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	279.930186101658	62	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACATTTCCAGTGTCCAC	7283	False	NA	NA	False	NA	NA	NA	99773292	99676356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99677495_99677542_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
2505	chr13	+	4251	4	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	41215	2786	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	196	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTTAATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	62318961	62324019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62320069_62320235_62320949_62321031_62321980_62322536
2506	chr19	+	3783	11	NIC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	2	-2	intron_retention	FALSE	canonical	3	421	junction_4	156.790433381632	1	50	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTGTTCAGAGTTATG	217	False	NA	NA	False	NA	NA	NA	46064381	46073965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071803_46071958_46072283_46072450
2507	chr12	-	2765	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	83	433	-23	-10	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	8	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAGAAGTGTGGAATG	NA	False	NA	NA	False	NA	NA	NA	110662746	110657471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
2508	chr1	+	3188	12	FSM	ENSMUSG00000116048.2	ENSMUST00000172165.8	3192	12	4	0	4	0	multi-exon	FALSE	canonical	2	28	junction_1	279.729178354959	66	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406718	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93406791_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
2509	chr2	+	3724	14	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	241	-1	intron_retention	FALSE	canonical	3	1260	junction_5	136.40099255222	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGATGTCCTTATGTCT	NA	False	NA	NA	False	NA	NA	NA	84868117	84877449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84875925_84876027_84876117_84876596_84876784_84876989
2510	chr11	-	3737	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-4	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	153.985408960848	1908	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTACATTGCCGATAT	971	False	NA	NA	False	NA	NA	NA	79145501	79130216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79130435_79130577_79131289_79131513_79131622_79132420_79132535_79132809_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
2511	chr7	-	3895	9	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	4	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	138.210889585445	254	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGCTTACGTTTACTTAC	NA	False	NA	NA	False	NA	NA	NA	42155145	42122818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123497_42123694_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42152297_42152366_42155033
2512	chr11	-	3578	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.083078726175	1142	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1303	False	NA	NA	False	NA	NA	NA	20062946	20012303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20014354_20014439_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
2514	chr15	-	2913	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-89	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	711.346005041772	3910	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283884	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248347_81248420_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
2515	chr6	-	4575	13	NIC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-1	-37	intron_retention	FALSE	canonical	3	776	junction_12	66.9047311896218	25	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTTTTTTTTAATATTA	-2	True	NA	NA	False	NA	NA	NA	30509749	30482450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30508512_30508664_30508802_30509683
2516	chrX	+	7223	39	NNC	ENSMUSG00000031314.19	novel	5954	39	NA	NA	-5117	-5	intron_retention	FALSE	non_canonical	0	0	junction_23	69.6773380694413	295	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAATCGAGAGTGATTTTA	NA	False	NA	NA	False	NA	NA	NA	100571222	100644635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100571293_100576457_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584365_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605676_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
2518	chrX	-	3468	11	NNC	ENSMUSG00000031232.18	novel	1608	11	NA	NA	-18	-645	intron_retention	FALSE	non_canonical	0	0	junction_1	70.7856623900632	88	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAACAAAAAACAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105055410	105012334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105013293_105013608_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
2520	chr14	+	4348	40	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-5	-2	combination_of_known_junctions	TRUE	canonical	3	405	junction_36	132.185085310088	13	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886762	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
2521	chr15	+	5858	23	NNC	ENSMUSG00000022272.18	novel	618	2	NA	NA	-1428	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	161.056846645027	417	35	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGCTTTCCTTGAGT	1601	False	NA	NA	False	NA	NA	NA	25751567	25813757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_25751717_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
2522	chr1	+	4830	33	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	-5	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	817.307048497343	1	155	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095249	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105118_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156518_185156587_185160048_185160114_185160193_185160355_185160397
2525	chr12	-	4990	13	FSM	ENSMUSG00000047534.18	ENSMUST00000140391.8	5016	13	15	11	9	-11	multi-exon	FALSE	canonical	3	216	junction_11	56.3414072123395	48	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTGAAATATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	65219363	65179518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
2526	chrUn_JH584304v1	-	3365	5	Intergenic	novelGene_4650	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_3	137.066589656269	1163	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACCATAGCTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	59731	52670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55702_56985_57152_58563_58836_59591
2527	chr16	+	4110	16	NIC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	26	0	intron_retention	FALSE	non_canonical	1	193	junction_4	110.515639918822	68	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGTAACTGAAAGTTA	1146	False	NA	NA	False	NA	NA	NA	93629180	93672960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
2528	chr11	-	3348	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	782.554711533456	1	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418698	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100367248_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
2529	chr6	-	2870	14	ISM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	68	4936	0	-3363	5prime_fragment	FALSE	canonical	3	776	junction_13	63.7139502434224	9	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGTGTAACCCTTGC	5	True	NA	NA	False	NA	NA	NA	30509714	30486162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
2530	chr6	-	1284	1	NIC	ENSMUSG00000029782.21	novel	3998	16	NA	NA	8522	41	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTAAACTTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	30483656	30482372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30482400_30483700
2531	chr6	-	4542	19	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	6	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	131.766125117175	8	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAACTTTTTTTTTTCA	9404	False	NA	NA	False	NA	NA	NA	82751429	82702028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82702543_82703484_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
2532	chr16	-	4970	33	NIC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	-64	-9	combination_of_known_junctions	FALSE	canonical	2	74	junction_30	226.28742784344	767	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATAATCCGATGACTG	NA	False	NA	NA	False	NA	NA	NA	8610236	8507472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8533608_8533784_8534378_8534484_8574679_8574937_8610099
2533	chr4	-	5744	17	NIC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	-14	3	intron_retention	FALSE	canonical	3	663	junction_5	199.914981929819	42	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGCCACTCACATTTA	NA	False	NA	NA	False	NA	NA	NA	135080476	135047798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135074169_135074425_135074516_135080407
2534	chr15	-	3084	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	258	4	-191	-4	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	5881	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283986	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
2539	chr9	+	2548	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	75	159	5	-159	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	32	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTAGGTACCCGTCTG	NA	False	NA	NA	False	NA	NA	NA	77824720	77891642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
2540	chr10	+	1440	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	68	1418	-8	-1418	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCTTCCCCCTGGAAAGG	NA	False	NA	NA	False	NA	NA	NA	128173670	128196930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
2541	chr11	-	4414	24	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	136	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGTCACTTCCAGGTCA	NA	False	NA	NA	False	NA	NA	NA	72342357	72332184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72332402_72332503_72332598_72333223_72333308_72333393_72333471_72333568_72333673_72334296_72334476_72334564_72334733_72334826_72334945_72335505_72336110_72336430_72336556_72336715_72337082_72337795_72337893_72337972_72338125_72338373_72338466_72338553_72338708_72338780_72338951_72339040_72339198_72339554_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341603_72341704
2542	chr19	-	3016	19	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-16	9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	651.600235791816	3	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTACTTGGATTTACTAGT	3897	False	NA	NA	False	NA	NA	NA	5345452	5323950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341447_5343142_5343328_5345289
2543	chr4	-	3138	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-51	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	104.708192399428	1	72	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	9472	False	NA	NA	False	NA	NA	NA	147894296	147838433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845736_147863045_147863130_147889671_147889781_147891482_147891641_147893953
2544	chr9	+	2334	12	NIC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	6719.82049765179	24	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTTGTGTTTT	1869	False	NA	NA	False	NA	NA	NA	59563855	59586648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59563933_59570322_59570440_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
2545	chr15	+	4465	32	ISM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	8730	45	-3757	-44	3prime_fragment	FALSE	canonical	3	538	junction_3	90.1454368888601	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGGTTGTTGTCTTAATG	66	False	NA	NA	False	NA	NA	NA	12833678	12935332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
2546	chr6	+	3402	8	NIC	ENSMUSG00000029767.17	novel	2670	7	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	350.870637246311	1581	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGCTTATGTGTCTT	-1	True	NA	NA	False	NA	NA	NA	29348117	29376666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_29348208_29356469_29356697_29361292_29361487_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
2547	chr18	+	3784	11	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	11	256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	639.612038660937	286	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTAGAATGAGCCATGAA	439	False	NA	NA	False	NA	NA	NA	61688355	61723388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496_61721704_61722283
2548	chrX	+	2769	21	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	17	-475	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	794.382104216856	12	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529153	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20542242_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
2549	chr15	-	2886	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-76	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	711.346005041772	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283871	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685_81283728_81283815
2550	chr15	-	1100	1	ISM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	2763	4	2763	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCTTGTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	98848821	98847721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98847700_98848800
2551	chr1	+	3521	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	36	385	36	-385	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	129	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATACTCCCCGTGCCACT	9406	False	NA	NA	False	NA	NA	NA	87603996	87647839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
2552	chr14	+	4552	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-12	40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	331.139235971819	1	135	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAATGAAATGGATTTT	1819	False	NA	NA	False	NA	NA	NA	121148623	121185451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157532_121159545_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176970_121178248_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
2553	chr17	+	2434	11	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCCGAACGCCCCCGAC	NA	False	NA	NA	False	NA	NA	NA	45878781	45884192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879491_45879785_45880051_45880163_45880314_45880395_45880753_45881183_45881493_45881591_45881721_45881938_45882103_45882337_45882548_45882692_45882838_45884092
2554	chr10	+	4111	15	Antisense	novelGene_ENSMUSG00002076247.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	704	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATTGGAGGTGCGCCGC	1333	False	NA	NA	False	NA	NA	NA	60934426	60983437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_60936787_60937458_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941299_60942042_60942150_60943355_60943443_60947938_60948069_60949215_60949294_60949788_60949937_60953473_60953540_60959085_60959258_60982039_60982111_60983301
2555	chr5	+	3420	10	Intergenic	novelGene_732	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGCCTCAAGAGGCTCGC	NA	False	NA	NA	False	NA	NA	NA	77061200	77099008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_77063252_77063790_77063911_77065878_77066103_77067217_77067346_77067602_77067755_77069316_77069392_77070059_77070202_77070297_77070415_77073520_77073726_77098802
2558	chr11	-	3473	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9011	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	511.837708501191	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTCAGTTATCTGCATT	413	False	NA	NA	False	NA	NA	NA	106615231	106545050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106614494_106614704_106615168
2561	chr1	+	4629	18	Antisense	novelGene_ENSMUSG00000041303.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	313	11	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAAACCTTCCCGGCCTG	NA	False	NA	NA	False	NA	NA	NA	54435162	54478166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_54437164_54438287_54438440_54442668_54442802_54444142_54444329_54444994_54445234_54455042_54455177_54455878_54455979_54456812_54457021_54458541_54458714_54459554_54459663_54462661_54462730_54463164_54463315_54466557_54466725_54467920_54468113_54469657_54469779_54473207_54473397_54476989_54477105_54477972
2562	chr5	-	3429	17	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23743	45622	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCCCAATGACTATTACAA	NA	False	NA	NA	False	NA	NA	NA	108256653	108208609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108217027_108217228_108221167_108221328_108228785_108228888_108229000_108229082_108234861_108234922_108235818_108235958_108239961_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251987_108252125_108252183_108252291_108252397_108254454_108255172_108255559
2563	chr15	-	4503	36	NIC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-1	1	intron_retention	FALSE	canonical	3	484	junction_24	49.9440503289962	469	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	76491712	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
2564	chrX	+	2822	21	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	35	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	769.605176372924	3	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529171	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529234_20536805_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
2566	chr11	+	2095	15	Antisense	novelGene_ENSMUSG00000020929.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCACCTGTGCACATAGAA	NA	False	NA	NA	False	NA	NA	NA	102729302	102742712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102729725_102729972_102730084_102730245_102730399_102730848_102730947_102731090_102731205_102731991_102732078_102732220_102732354_102732507_102732583_102734162_102734257_102734963_102735066_102736919_102737062_102737409_102737519_102738779_102738977_102740008_102740137_102742581
2567	chr5	+	3470	3	Antisense	novelGene_ENSMUSG00000051391.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGCGGACAACCCCCTGC	2158	False	NA	NA	False	NA	NA	NA	135937262	135963469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135938669_135938734_135940501_135963171
2568	chr6	-	4064	5	NIC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	70	-2	intron_retention	FALSE	canonical	3	761	junction_1	33.537292675468	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAACTGTGTCTATTACT	NA	False	NA	NA	False	NA	NA	NA	72416453	72409784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72413013_72413179_72413324_72413399_72413513_72413977_72414432_72416328
2569	chr10	+	2801	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	238	71	0	2	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	3411	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1621	False	NA	NA	False	NA	NA	NA	79690498	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
2570	chrX	+	3281	22	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	190.525207978586	18	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799449	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810754_150816727_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
2573	chr3	-	3180	20	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	25	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	402.928435456872	8	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104725592	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703032_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712407_104725523
2575	chr10	+	2880	13	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	3	intron_retention	FALSE	canonical	3	24	junction_1	471.055751300558	3015	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1585	False	NA	NA	False	NA	NA	NA	79690462	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
2577	chr4	+	2146	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	19.6	2	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576867	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592102_147596801_147597094_147598016_147598425_147599008_147599749_147600065
2579	chr15	-	3873	16	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-17	287	intron_retention	FALSE	canonical	3	2899	junction_7	231.48899661875	2	83	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGGAGAAAACAGAGTT	NA	False	NA	NA	False	NA	NA	NA	11399704	11383803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387454_11387557_11387659_11387786_11387865_11388166_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
2580	chr9	-	5393	24	FSM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	-10	-778	-10	778	multi-exon	FALSE	canonical	3	398	junction_4	55.8021416884086	543	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATTGATGTGCAAAAT	7173	False	NA	NA	False	NA	NA	NA	22300494	22242529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
2582	chr4	-	4102	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	17	0	17	0	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	853	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000108	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
2583	chr6	-	3987	19	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	30	9	intron_retention	FALSE	canonical	2	5	junction_18	274.601962218628	5	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGGCTGACTGGTTTCAG	7962	False	NA	NA	False	NA	NA	NA	124806341	124791991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124804977_124805103_124806247
2584	chr10	+	3549	9	NIC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	66	-5	intron_retention	FALSE	canonical	3	1246	junction_7	133.686608809559	5	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGTTTGAGCTTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	128173744	128198343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128195405_128195812_128196023_128196836
2585	chrX	-	2785	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	53	10	-4	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921356	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
2587	chr4	+	5052	10	NIC	ENSMUSG00000028248.16	novel	2438	10	NA	NA	0	4	intron_retention	FALSE	canonical	3	402	junction_3	31.0876895964374	329	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGCTGGCTATGATACA	-11	True	NA	NA	False	NA	NA	NA	21848047	21876471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21870406_21871437_21871609_21873585
2588	chr9	-	4046	24	NIC	ENSMUSG00000032480.18	novel	4441	23	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_19	182.775513865531	332	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109946474	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109937008_109937038_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109946425
2590	chr9	+	3370	18	Intergenic	novelGene_1033	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	475	9	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACGCGCAAGTCCGGGAAC	NA	False	NA	NA	False	NA	NA	NA	53009754	53159408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010566_53028454_53028589_53060801_53060860_53068469_53068633_53071197_53071320_53115359_53115829_53118763_53118857_53120989_53121077_53124535_53124634_53134955_53135047_53136773_53136934_53140422_53140555_53145129_53145318_53146562_53146683_53147698_53147857_53149345_53149478_53151774_53151838_53159117
2592	chr9	+	2204	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5378.1801792056	24563	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	1850	False	NA	NA	False	NA	NA	NA	59563836	59586655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576234_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
2593	chr16	-	3271	17	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	24	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	379.752833885081	31	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGGTTTAAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	15455240	15441966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442634_15443425_15443560_15443899_15443946_15444033_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
2594	chr1	-	6108	12	NNC	ENSMUSG00000054387.14	novel	7105	11	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.637140634776	257	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTTGTCATTATTGG	NA	False	NA	NA	False	NA	NA	NA	132953121	132913957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_132914092_132915055_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
2595	chr19	+	2521	12	Antisense	novelGene_ENSMUSG00000096592.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATCCTTAACACTAATCA	NA	False	NA	NA	False	NA	NA	NA	40538719	40562284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40539773_40541966_40542064_40543034_40543224_40545864_40545985_40546094_40546294_40551348_40551482_40553277_40553500_40555014_40555112_40556767_40556843_40557479_40557616_40558906_40559036_40562213
2597	chr17	-	2477	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	6	37	6	-37	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	15	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGTATGCAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	45884191	45878737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
2598	chr5	+	3843	21	NIC	ENSMUSG00000036817.15	novel	2608	22	NA	NA	0	-1	combination_of_known_splicesites	TRUE	canonical	3	12	junction_6	225.839295739249	195	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTGTCTTATCTCTGC	NA	False	NA	NA	False	NA	NA	NA	139186423	139235594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
2599	chr1	-	3974	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	11	566	11	-566	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTCAAAATTGATAAATAGA	NA	False	NA	NA	False	NA	NA	NA	79739475	79680544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
2600	chr17	+	4845	10	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	983.774753402474	2	115	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAAACAACCGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35460780	35472651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35470615_35470828_35471833_35471939_35472085_35472182_35472331_35472448
2602	chr4	+	4972	10	NIC	ENSMUSG00000028248.16	novel	2438	10	NA	NA	0	-18	intron_retention	FALSE	canonical	3	26	junction_4	135.37027410444	39	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAATAAAATTCTACTGAA	-11	True	NA	NA	False	NA	NA	NA	21848047	21876449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860877_21860992_21861986_21862178_21865876_21866015_21869515_21870406_21871437_21871609_21873585
2603	chr3	-	6042	5	NNC	ENSMUSG00000105837.5	novel	421	3	NA	NA	-106107	-4663	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	761	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATCGCCCTGGGGGAT	NA	False	NA	NA	False	NA	NA	NA	129432144	129325943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_129326143_129326294_129326417_129398688_129398820_129421929_129422080_129426704
2605	chr12	-	2768	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	86	427	-20	-4	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	2	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTGTGGAATGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
2606	chr18	+	3652	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	41	2569	7	-153	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACGCACGCTTCTAATT	NA	False	NA	NA	False	NA	NA	NA	35695251	35724319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
2608	chr4	-	3652	17	FSM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	118	27	-1	-20	multi-exon	FALSE	canonical	3	283	junction_5	249.404846271579	24	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAATAAATTTCTAAATTT	NA	False	NA	NA	False	NA	NA	NA	135080514	135047821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
2609	chr7	+	4094	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	244.101797412473	2	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGTCTTGATCTGATTG	7240	False	NA	NA	False	NA	NA	NA	109617522	109655323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650398_109650619_109650735_109651917_109652125_109653206_109653324_109654223
2610	chr18	-	4976	23	NNC	ENSMUSG00000006740.15	novel	6032	26	NA	NA	-2388	-18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	358.245160527428	13	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACATTTGAACCTTACT	548	False	NA	NA	False	NA	NA	NA	6226417	6201019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6202204_6202371_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211089_6211232_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381
2611	chr1	+	3456	20	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-3	0	intron_retention	FALSE	non_canonical	0	0	junction_16	482.445748532421	37	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3139	False	NA	NA	False	NA	NA	NA	180396485	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421664_180426494_180426646_180427157_180427220_180427660_180427776_180428014
2613	chr2	-	3360	30	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.182465607659627	28	32	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTCCCACGTGCGTTC	NA	False	NA	NA	False	NA	NA	NA	146919920	146854954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855115_146866425_146866556_146866634_146866746_146867113_146867225_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871547_146871644_146871700_146871786_146871895_146876771_146876817_146878578_146878714_146880086_146880206_146882733_146882870_146883905_146884015_146884092_146884182_146884777_146884851_146889552_146889639_146891211_146891308_146891900_146891983_146893632_146893686_146903164_146903212_146903337_146903456_146905150_146905281_146910711_146910774_146916802_146916944_146919396
2614	chr15	+	4131	9	Antisense	novelGene_ENSMUSG00000022234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	76	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACACCGCACCTCCCTC	NA	False	NA	NA	False	NA	NA	NA	31590973	31601909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_31592612_31592791_31592930_31593012_31593201_31593662_31593783_31594244_31594393_31594479_31595990_31597556_31597721_31598144_31598207_31601746
2615	chr6	-	4167	22	NIC	ENSMUSG00000012535.15	novel	3989	23	NA	NA	0	0	intron_retention	FALSE	canonical	3	521	junction_16	53.4311602802044	28	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	13	True	NA	NA	False	NA	NA	NA	29609612	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
2616	chr4	-	6149	17	FSM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	6	3	0	-3	multi-exon	FALSE	canonical	3	127	junction_2	24.1993672437938	300	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTGGAATTCCCTGT	NA	False	NA	NA	False	NA	NA	NA	86530286	86497094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_86500256_86501117_86502111_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
2617	chr15	+	5192	23	FSM	ENSMUSG00000015002.19	ENSMUST00000015146.16	5215	23	19	4	11	-4	multi-exon	FALSE	canonical	3	451	junction_16	48.5493912261498	307	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATAAGTGCATTTTTATT	NA	False	NA	NA	False	NA	NA	NA	65658907	65745661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
2619	chr9	+	2214	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	208	10	0	-10	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	45	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTTGTGTTTT	1872	False	NA	NA	False	NA	NA	NA	59563858	59586648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
2620	chr7	+	4183	31	FSM	ENSMUSG00000030447.16	ENSMUST00000032629.16	6440	31	139	2118	4	13	multi-exon	FALSE	canonical	3	493	junction_19	46.6292707308284	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAAAAAAAGACCTCTA	NA	False	NA	NA	False	NA	NA	NA	55491957	55580232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
2622	chr5	+	3911	22	FSM	ENSMUSG00000036817.15	ENSMUST00000078690.13	2608	22	-13	-1290	0	-1	multi-exon	FALSE	canonical	3	224	junction_6	196.102233969428	586	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTGTCTTATCTCTGC	NA	False	NA	NA	False	NA	NA	NA	139186421	139235594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
2623	chr5	-	391	2	NNC	ENSMUSG00000035325.17	novel	1686	6	NA	NA	840	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	100511289	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100509845_100511235
2626	chr10	+	3773	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	13	-864	13	864	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	1995	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGAATTTTGAATGTG	NA	False	NA	NA	False	NA	NA	NA	41395422	41407908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
2628	chrX	+	3795	13	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	325.043191574426	68	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139647	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207078_95207377_95207517_95208980_95209074_95209530_95209756_95210075
2629	chr14	-	4176	7	FSM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	-9	4	-9	-4	multi-exon	FALSE	canonical	0	0	junction_3	212.21091447478	984	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTTCTAGTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	47059708	47045609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
2631	chrX	-	3020	22	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTAAGAGACAGGTGGGC	NA	False	NA	NA	False	NA	NA	NA	20548935	20535367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20535501_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
2632	chr18	+	2029	9	ISM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	267	1087	4	-107	intron_retention	FALSE	canonical	3	5078	junction_4	234.50316495732	616	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTTGTTTGCAGCTCC	NA	False	NA	NA	False	NA	NA	NA	77861695	77869482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684
2633	chr10	+	2915	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_2	565.835268448696	21	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1624	False	NA	NA	False	NA	NA	NA	79690501	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694032_79694150_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
2634	chr2	+	6798	35	NNC	ENSMUSG00000086196.8	novel	2127	6	NA	NA	-46084	12049	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	117	36	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCACCACGCCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	60122447	60213627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_60124282_60129389_60129559_60131298_60131422_60133921_60134074_60136675_60136842_60138481_60138712_60141953_60142148_60144500_60144618_60146432_60146601_60148651_60148817_60152133_60152269_60154162_60154293_60158130_60158294_60158735_60158842_60160321_60160460_60161069_60161154_60161419_60161489_60162662_60162837_60163263_60163304_60164792_60164907_60168636_60168716_60170501_60170581_60178697_60178837_60180198_60180402_60182399_60182568_60182695_60182791_60183269_60183377_60184748_60184907_60185712_60185910_60187625_60187761_60188810_60188925_60195355_60195522_60199104_60199276_60206202_60206578_60213486
2635	chr10	-	5268	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	-150	-3637	-150	2088	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	1520	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTAGTGTCATCCATGGT	NA	False	NA	NA	False	NA	NA	NA	128012498	127965338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
2636	chr11	+	912	1	FSM	ENSMUSG00000080776.2	ENSMUST00000119853.2	813	1	-26	-73	-26	73	mono-exon	FALSE	NA	NA	NA	NA	NA	290	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTTCTTGCAGCCATA	NA	False	NA	NA	False	NA	NA	NA	46618618	46619530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_46618600_46619500
2637	chr4	-	4414	29	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	-2	-3	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_28	189.937341977693	820	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTCTTGGTCTCCGTGT	224	False	NA	NA	False	NA	NA	NA	41275129	41194318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41274984
2639	chr11	-	3545	12	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1624.07681595799	1	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677066_106677186_106677273_106677371_106677734_106677901_106679133
2640	chr5	-	2351	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	7	260	5	multi-exon	FALSE	canonical	3	916	junction_1	0	3	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCATTTGTGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	125466818	125463035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
2641	chr16	-	4080	14	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	3	110	intron_retention	FALSE	canonical	3	4287	junction_9	395.661561193297	11	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87292744	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87290675_87291224_87291316_87292616
2642	chr12	+	3451	6	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-54	intron_retention	FALSE	canonical	3	5890	junction_1	188.188203668562	56	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24760490_24761445_24761541_24761667_24761802_24762659
2643	chr5	+	1050	1	NIC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	-1705	-384	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATAGTTAAATAAAGTAAAG	3212	False	NA	NA	False	NA	NA	NA	139215153	139216203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_139215200_139216200
2645	chr12	+	3798	3	NNC	ENSMUSG00000079104.5	novel	1720	2	NA	NA	139	2286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	158.5	3	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTATGTTTTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	57277336	57288954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_57277398_57285148_57285614_57285682
2646	chr5	-	3851	14	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23538	45628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	121	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256858	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208744_108228785_108228888_108229000_108229082_108234861_108234958_108235158_108235267_108235817_108235956_108239926_108240028_108241212_108241272_108241990_108242113_108246982_108247053_108248678_108248848_108251883_108252017_108252269_108252396_108254452
2648	chr1	+	3425	23	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	631.529960420795	7	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATCTATTTGGTTCATC	NA	False	NA	NA	False	NA	NA	NA	185095254	185160552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185146496_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
2649	chr11	+	2124	16	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	15	4173	-7	3032	5prime_fragment	FALSE	canonical	3	2354	junction_12	152.295093668692	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCACTGATGACGCTGAT	NA	False	NA	NA	False	NA	NA	NA	72332195	72338421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378
2650	chr4	+	569	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	-78	637	-78	-637	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTATGAGGGCTACGCCC	NA	False	NA	NA	False	NA	NA	NA	103420520	103421089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_103420500_103421100
2651	chrX	+	2879	22	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	37	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	918.415296908959	2	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529173	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535374_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547051_20548740
2652	chrX	+	5944	34	NIC	ENSMUSG00000025862.15	novel	5825	33	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	3	63	junction_30	34.473955780863	131	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTTGTATGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	41239558	41366051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
2653	chr8	-	3044	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	21	849	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	2091.95327385676	461	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTCATTTTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	43759952	43747250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758716_43759201_43759877
2654	chr16	-	5587	32	NNC	ENSMUSG00000022822.17	novel	5372	31	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.497200164526	27	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAGCTCTTGTTGTATAA	NA	False	NA	NA	False	NA	NA	NA	20245102	20150057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20150467_20150586_20150824_20150880_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
2655	chr1	-	3088	16	NIC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	38	0	intron_retention	FALSE	canonical	3	2842	junction_6	235.844261230914	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287346	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
2656	chr3	+	4352	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	113	5	31	3	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965713	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
2658	chrX	-	2841	4	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	5938	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	272.471813017216	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAAAAATCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	149771030	149766147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766901_149767674_149767906_149769183_149770834
2659	chr10	-	3269	15	NIC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	-859	-1	intron_retention	FALSE	canonical	3	2860	junction_10	356.833380199344	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGTGCTTATTTTCATA	NA	False	NA	NA	False	NA	NA	NA	86539816	86526704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323
2660	chrX	+	3542	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	64	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	216.934998071841	6	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799487	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819433_150820382_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
2661	chr10	+	5301	29	NNC	ENSMUSG00000019984.17	novel	4798	29	NA	NA	-19	256	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	14.7083899422703	275	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTTTAGGAATGACCCC	NA	False	NA	NA	False	NA	NA	NA	24745915	24789835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773255_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
2663	chr9	-	2186	11	Antisense	novelGene_ENSMUSG00000111394.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	10	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGGTTATCACAGCTGC	NA	False	NA	NA	False	NA	NA	NA	59586625	59563839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_59563929_59572478_59572649_59573169_59573236_59575829_59575964_59576195_59576381_59577747_59578018_59578854_59579007_59579201_59579354_59582846_59583015_59585323_59585508_59586009
2666	chr10	-	2742	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-259	0	-259	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	225	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8433	False	NA	NA	False	NA	NA	NA	128402115	128393636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
2667	chr2	+	5259	24	Antisense	novelGene_ENSMUSG00000061136.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	622	16	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGGCGCCCGCCGGGGCC	NA	False	NA	NA	False	NA	NA	NA	53026864	53081266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_53029279_53030465_53030609_53031632_53031695_53031781_53031875_53031953_53032042_53034795_53034892_53035244_53035383_53035631_53035748_53035834_53035927_53036104_53036221_53040649_53040784_53041690_53041838_53042453_53042570_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53047007_53049266_53049328_53049568_53049691_53050787_53050899_53066374_53066429_53067364_53067446_53079980_53080113_53081034
2668	chr10	-	4537	11	ISM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-19	-1	-19	-1	intron_retention	FALSE	canonical	3	1884	junction_8	103.450906230927	18	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTTGTGTGTTCTCTTT	-6	True	NA	NA	False	NA	NA	NA	128401875	128393635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445
2669	chr17	+	4206	11	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	53.5522175077746	65	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTCCTGCAGTGAAT	9389	False	NA	NA	False	NA	NA	NA	36152566	36170560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36163839_36169830
2670	chr7	-	5089	1	Antisense	novelGene_ENSMUSG00000080352.3_AS_novelGene_ENSMUSG00000119643.1_AS_novelGene_ENSMUSG00000101166.7_AS_novelGene_ENSMUSG00000045411.17_AS_novelGene_ENSMUSG00000080683.3_AS_novelGene_ENSMUSG00000118729.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	88	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCCACCGCCGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	43901299	43896210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_43896200_43901300
2674	chrX	+	3746	24	NNC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	117	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	256.611693881384	187	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGAGTTTTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	143118981	143157446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152703_143152858_143156543
2677	chr3	-	5180	2	Fusion	ENSMUSG00000038975.15_ENSMUSG00000065463.3	novel	654	7	NA	NA	3	-15	intron_retention	FALSE	canonical	3	638	junction_1	0	21	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGTCAAAATCAGTGG	6157	False	NA	NA	False	NA	NA	NA	153618589	153612944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_153615236_153615700
2678	chr18	+	1866	7	Antisense	novelGene_ENSMUSG00000024587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGGCCAGCCCCACCAGT	NA	False	NA	NA	False	NA	NA	NA	64632735	64638391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_64633723_64634375_64634504_64634812_64634946_64636577_64636693_64637408_64637543_64637916_64638114_64638219
2679	chr18	+	3094	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-23	-50	intron_retention	FALSE	non_canonical	0	0	junction_21	159.25212610644	404	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGTATCTGTAATATACTTA	9027	False	NA	NA	False	NA	NA	NA	32970340	32999403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996282_32997725_32997894_32998905
2680	chr1	+	3212	14	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	-7	-538	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	414.836319043588	6	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATATTAAATGAGTAGTC	NA	False	NA	NA	False	NA	NA	NA	93406773	93437444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93407185_93407289_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433301_93434705_93434805_93435434
2681	chrX	+	3657	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	45	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	183.87833764627	1	67	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799468	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810783_150811135_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
2682	chr4	+	3031	15	Intergenic	novelGene_1828	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	96	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGGCCCTGCCCGTCACG	3137	False	NA	NA	False	NA	NA	NA	41194339	41275127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41195249_41195333_41195753_41202395_41202460_41203533_41203579_41205525_41205740_41206154_41206330_41206837_41207105_41209352_41209570_41211704_41211826_41227245_41227277_41229694_41229849_41233603_41233718_41235518_41235590_41251529_41251672_41275039
2683	chr6	-	4329	31	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	45	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	160.929991680302	8	36	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTATAGACTTTTAAGC	3538	False	NA	NA	False	NA	NA	NA	125168521	125144987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148495_125148778_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164049_125164116_125166725_125166872_125168460
2684	chr18	+	3938	9	NIC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	4	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	843.922500885004	6	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGAGGCTGGTTGTCTCT	476	False	NA	NA	False	NA	NA	NA	61688392	61723134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_61688945_61689573_61689681_61701334_61701462_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
2685	chr12	-	4183	3	Intergenic	novelGene_4332	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	28	junction_1	12.5	528	49	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	23455093	23443955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23447895_23448096_23448224_23454976
2687	chr9	+	2213	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	216	3	-5	-3	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	20	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	1880	False	NA	NA	False	NA	NA	NA	59563866	59586655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
2689	chr6	-	2863	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3823.32104851267	1	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709738_122717352_122717440_122719334
2691	chr10	+	876	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	23	5	-7	-5	multi-exon	FALSE	canonical	3	514	junction_6	43.3628104870214	1669	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATTCTGTGTTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	120044677	120060817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
2692	chr10	-	2997	16	NIC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	1127	-2	intron_retention	FALSE	canonical	3	2860	junction_10	279.778642660388	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAGTGCTTATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86540246	86526705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_86526993_86527492_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157
2694	chr9	-	4080	17	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_16	264.803228832278	51	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAAGCCTGTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	108526577	108480147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108523130_108523296_108526427
2695	chr9	+	3554	20	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	572.224090695506	616	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	21279166	21316659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308762_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
2696	chr16	-	3888	16	NNC	ENSMUSG00000052459.14	novel	4234	15	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.466703256489	6	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTTCCCTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	43959431	43905764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_43907287_43907395_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
2697	chr11	-	3191	16	FSM	ENSMUSG00000020717.20	ENSMUST00000106796.9	3441	16	251	-1	116	0	multi-exon	FALSE	canonical	3	410	junction_2	373.181135643269	3	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	9675	False	NA	NA	False	NA	NA	NA	106605969	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
2698	chr3	+	3799	21	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-3	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	5071.70515581298	4	117	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAATAATAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102927976	102965090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102928208_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201_102964618_102964711
2699	chr4	-	5624	16	FSM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	25	-1	0	1	multi-exon	FALSE	canonical	3	122	junction_5	15.541199724889	184	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATAGCTGTGTTTGGTTTT	12	True	NA	NA	False	NA	NA	NA	19570083	19519252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_19523295_19525002_19525240_19526283_19526418_19528059_19528112_19528187_19528243_19532398_19532533_19533054_19533115_19535211_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
2700	chr6	-	5701	21	NIC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	60	0	intron_retention	FALSE	canonical	3	521	junction_15	54.2778960535502	2	127	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	91	False	NA	NA	False	NA	NA	NA	29609750	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_29543360_29551850_29551964_29554793_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
2701	chr11	+	3707	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-6	58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	744.764742452273	2	96	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCAAGAGTCCAGCTCCC	NA	False	NA	NA	False	NA	NA	NA	72332196	72341986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337982_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341582_72341702
2702	chr9	-	4095	6	FSM	ENSMUSG00000042688.17	ENSMUST00000168937.8	4089	6	-15	9	-15	-7	multi-exon	FALSE	canonical	2	3	junction_5	119.229862031288	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTAGCATGTCACTGCT	NA	False	NA	NA	False	NA	NA	NA	75316656	75294192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75316483
2703	chr10	+	3003	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165153.8	2369	13	-17	-617	11	3	multi-exon	FALSE	canonical	3	966	junction_7	243.575949255167	4070	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1572	False	NA	NA	False	NA	NA	NA	79690449	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
2704	chr4	-	3422	8	Intergenic	novelGene_1815	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGAGCAAGGGGGTGGC	9147	False	NA	NA	False	NA	NA	NA	33022177	32983397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_32983606_32995799_32996094_33004146_33004349_33005131_33005249_33007069_33007212_33012902_33013051_33018644_33019212_33020433
2705	chr1	-	4332	28	NNC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	147.669634616106	246	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	93406537	93335483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340221_93341245_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345362_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
2709	chrX	+	7250	6	FSM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	120	5	120	-5	multi-exon	FALSE	canonical	3	35	junction_3	5.41848687365763	113	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACTGAGTTGAACCGTGT	NA	False	NA	NA	False	NA	NA	NA	102400201	102439693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_102400496_102409819_102409875_102417204_102417361_102430860_102430918_102431592_102431653_102433065
2710	chr5	-	2994	12	Intergenic	novelGene_793	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	36	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256652	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_108208740_108228785_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242107_108246977_108247053_108248678_108248853_108254858
2711	chr6	+	4269	31	FSM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	40	-2	-17	2	multi-exon	FALSE	canonical	3	196	junction_27	51.0355975983648	532	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAGTGCATGGAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	116185038	116239649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
2712	chrX	+	3341	27	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	3	422	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	768.92687073894	1	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAACCTCAAGACCCTCT	NA	False	NA	NA	False	NA	NA	NA	20524662	20548866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616_20548778_20548830
2713	chr10	-	2756	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	41	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	875.903235242713	5122	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTCAGTGCTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	86541332	86526707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534206_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
2715	chr11	+	4089	10	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	3	0	intron_retention	FALSE	non_canonical	0	0	junction_1	260.768285582108	4199	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9434	False	NA	NA	False	NA	NA	NA	88861080	88882439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861091_88861243_88861306_88861723_88861820_88863446_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
2716	chr9	-	4839	3	FSM	ENSMUSG00000032449.14	ENSMUST00000148995.8	532	3	-686	-3621	-686	-17	multi-exon	FALSE	canonical	3	1282	junction_1	9	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTAAAAATGTGTATCT	NA	False	NA	NA	False	NA	NA	NA	96968000	96957634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96961293_96962245_96962536_96967109
2717	chr8	-	3774	24	ISM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	4021	253	2302	-253	3prime_fragment	FALSE	canonical	3	597	junction_23	104.672357656962	4	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTGTGTAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	111569387	111537123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319
2720	chr11	-	4604	5	FSM	ENSMUSG00000038615.18	ENSMUST00000167149.8	4596	5	-18	10	-18	7	multi-exon	FALSE	canonical	3	79	junction_4	530.254891538023	1091	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTGCACTTTCTCCC	NA	False	NA	NA	False	NA	NA	NA	96720346	96708249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720236
2722	chr2	-	2708	17	NNC	ENSMUSG00000027071.15	novel	1764	13	NA	NA	-9644	-5210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	431	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTAGGGATGCGGGGGAAG	9576	False	NA	NA	False	NA	NA	NA	84877450	84867607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84867671_84868135_84868313_84868695_84868881_84870215_84870322_84870606_84870798_84870900_84871133_84871261_84871367_84871451_84871580_84871775_84871999_84872584_84872658_84873034_84873173_84873296_84873346_84874662_84874791_84875751_84875923_84876025_84876115_84876594_84876782_84876987
2723	chr7	-	1047	6	NNC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	-26	-3541	intron_retention	FALSE	non_canonical	0	0	junction_1	359.194432028115	1	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGCAACTGAGGCGGCC	NA	False	NA	NA	False	NA	NA	NA	28038197	28029008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28029064_28029425_28030071_28030794_28030955_28037423_28037449_28037776_28037861_28038119
2724	chr2	-	3630	9	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-8	-419	intron_retention	FALSE	canonical	0	0	junction_6	385.362309229899	10	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTTGGCTCTATTAAAA	NA	False	NA	NA	False	NA	NA	NA	154916375	154901648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907337_154907607_154909242_154910939_154916284
2726	chr1	+	3437	23	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	36	-252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	599.484532365477	2	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3183	False	NA	NA	False	NA	NA	NA	180396529	180428565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405183_180405251_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418916_180421604_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
2728	chr15	-	1735	13	ISM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	28	973	28	-83	5prime_fragment	FALSE	canonical	3	559	junction_8	30.1260085123949	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGCCTTCCATCCCTC	NA	False	NA	NA	False	NA	NA	NA	76361449	76338161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
2729	chr1	-	3059	14	Antisense	novelGene_ENSMUSG00000116048.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGATGGCGTCATCGCGC	8245	False	NA	NA	False	NA	NA	NA	93437406	93406721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_93406789_93416843_93416875_93418876_93418999_93423299_93423386_93425060_93425186_93426732_93426868_93426993_93427112_93428178_93428280_93429226_93429375_93431156_93431238_93433259_93433322_93434682_93434804_93435433_93436921_93437031
2730	chr4	+	3194	8	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078496.10	novel	1244	3	NA	NA	-13	2581	multi-exon	TRUE	non_canonical	0	0	junction_1	127.874779310361	1	99	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147390117	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147390233_147393100_147393194_147592042_147592098_147595209_147595337_147596801_147597429_147597511_147598049_147598717_147599216_147599382
2731	chr14	-	2721	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	2252.20220349597	51	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCTATTGCTGTACTTT	NA	False	NA	NA	False	NA	NA	NA	36857252	36842779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36848458_36848680_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
2733	chr7	+	4578	21	Intergenic	novelGene_3058	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	23	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCAACCGCGGCGCCGGA	2204	False	NA	NA	False	NA	NA	NA	143111445	143153793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_143111743_143112863_143112948_143113381_143113445_143115594_143115663_143116696_143116781_143118722_143118803_143122051_143122121_143122669_143122860_143123136_143123231_143123566_143123674_143123756_143123891_143124280_143124407_143125219_143125336_143128251_143130460_143138377_143138535_143139435_143139537_143140153_143140247_143140839_143140934_143142231_143142319_143146146_143146398_143153718
2734	chr11	-	3193	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	26	-502	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1071.55122447164	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTTCAAAAAAAAAATTTT	8162	False	NA	NA	False	NA	NA	NA	50216474	50185795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50186585_50186642_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
2735	chr13	+	5458	18	NNC	ENSMUSG00000038518.16	novel	644	4	NA	NA	-822	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	196.416582926297	3	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAATAATAAAAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	44886693	45075090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_44886830_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
2736	chr16	+	3978	12	Antisense	novelGene_ENSMUSG00000034064.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	299	32	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCGCCCCCGCCCGCTGT	NA	False	NA	NA	False	NA	NA	NA	38343850	38370308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_38344604_38345133_38347143_38347937_38347995_38349805_38349975_38352145_38352207_38355087_38355186_38358267_38358327_38363197_38363322_38366110_38366249_38368801_38368946_38369705_38369999_38370235
2737	chr4	+	3077	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43243	2335	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	140.119591777881	1	72	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAGATAAAAATATACT	NA	False	NA	NA	False	NA	NA	NA	147533630	147600278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536233_147595281_147595337_147596801_147597165_147597836
2739	chr14	+	4338	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	196.097705238996	72	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTCTGATTGTCGTTGA	NA	False	NA	NA	False	NA	NA	NA	47886796	47974021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47973556
2740	chrX	-	3381	10	NNC	ENSMUSG00000016534.16	novel	3604	9	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.301413444618	260	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGGAAATTTGCTCACA	NA	False	NA	NA	False	NA	NA	NA	37545298	37508388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37508523_37508707_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
2741	chrX	-	3395	24	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.01965559996162	1	87	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGGAGCTCGGAAGCGCG	NA	False	NA	NA	False	NA	NA	NA	20548933	20524661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20524765_20534686_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539060_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546054_20547472_20547751_20548138_20548242_20548345_20548448_20548615
2742	chr8	-	4344	13	NNC	ENSMUSG00000033596.6	novel	4443	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	123.327477338453	30	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCAGTGTCTTCCGCCTG	5515	False	NA	NA	False	NA	NA	NA	112026835	111997575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020725_112023763_112024275_112026766
2743	chr1	-	3804	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	55	4	-48	-4	multi-exon	FALSE	canonical	3	395	junction_2	27.5	971	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTTGTTCTGTTTCAAG	6327	False	NA	NA	False	NA	NA	NA	37469129	37456168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
2746	chr12	+	7233	52	FSM	ENSMUSG00000020576.11	ENSMUST00000042953.10	7234	52	-4	5	-4	3	multi-exon	TRUE	canonical	3	21	junction_37	10.8075685101282	132	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGATGCCCTTTGAGTACT	NA	False	NA	NA	False	NA	NA	NA	13319129	13633807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645_13371840_13372856_13373115_13374269_13374396_13378336_13378489_13380617_13380759_13381024_13381104_13385831_13385937_13386274_13386412_13402783_13402868_13406824_13406979_13410931_13411118_13412442_13412617_13424696_13424831_13427434_13427498_13429647_13429771_13440925_13441029_13443303_13443534_13455374_13455488_13458194_13458309_13463528_13463643_13464784_13464943_13465645_13465733_13482897_13483063_13491467_13491582_13491862_13491948_13503053_13503131_13503485_13503624_13519841_13520072_13524127_13524239_13532386_13532638_13533710_13534046_13563370_13563590_13568945_13569149_13570695_13570786_13584380_13584577_13608612_13608753_13610837_13610977_13616129_13616259_13633391
2748	chr5	-	4606	25	FSM	ENSMUSG00000029191.17	ENSMUST00000204965.3	4751	25	37	108	-12	-108	multi-exon	FALSE	canonical	3	270	junction_12	80.615847887097	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAACAGAAGTCCTGGAG	11	False	NA	NA	False	NA	NA	NA	65492976	65419302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
2749	chr11	-	5016	11	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	65	274	intron_retention	FALSE	non_canonical	0	0	junction_9	273.306494617307	39	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACACTGCAGCAGGCAGG	NA	False	NA	NA	False	NA	NA	NA	88755347	88722306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88733151_88734094_88736692_88755222
2750	chr19	+	3697	13	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-53	11	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	263.476899156053	2250	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCGTTGTGCACGTAA	84	False	NA	NA	False	NA	NA	NA	46064248	46073980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
2752	chr19	-	4958	24	FSM	ENSMUSG00000024908.16	ENSMUST00000113997.9	4952	24	-5	-1	-5	1	multi-exon	FALSE	canonical	3	249	junction_9	67.9031613363524	267	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTCCTCGTGAGCCTT	NA	False	NA	NA	False	NA	NA	NA	3625754	3504931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
2753	chr9	+	4284	26	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-18	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	267.834348805376	2	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTGTATGTGTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	44291807	44303657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297009_44298334_44298390_44298544_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285_44303213_44303249
2754	chr6	+	5338	25	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	-4426	-12	intron_retention	FALSE	canonical	3	97	junction_24	64.1485769955621	5	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACGCTTCACAGAGG	NA	False	NA	NA	False	NA	NA	NA	116193088	116239614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239321
2755	chrX	-	4033	11	FSM	ENSMUSG00000031232.18	ENSMUST00000033583.14	4115	11	73	9	-40	-9	multi-exon	FALSE	canonical	3	21	junction_1	64.6371410258839	179	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATCTAAATTACATGGTTT	NA	False	NA	NA	False	NA	NA	NA	105055432	105011698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_105014633_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
2756	chr2	+	4248	33	NIC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	-5	0	intron_retention	FALSE	canonical	0	0	junction_22	63.2803703642567	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	180961540	180998407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716
2757	chrX	+	6008	5	NIC	ENSMUSG00000073125.11	novel	3780	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	1084	junction_1	267.680196316425	4	117	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72235816	72246536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72235856_72237775_72237913_72238605_72243451_72245455_72245552_72245645
2758	chr2	+	5006	4	FSM	ENSMUSG00000027162.8	ENSMUST00000151163.2	746	4	-12	-4248	5	-17	multi-exon	FALSE	canonical	3	366	junction_1	18.4932420089069	11	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTCTCTTCTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	109721202	109731331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580
2759	chr12	+	4453	14	NIC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	845	intron_retention	FALSE	canonical	3	294	junction_6	23.4056079862733	1653	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTGTTTTCAAACTCCG	NA	False	NA	NA	False	NA	NA	NA	85157631	85182464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
2761	chr7	-	2848	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-25	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	606.100839382359	3	25	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165555	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157928_126158092_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
2762	chr1	+	3701	25	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	620.494018012171	4	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095260	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111077_185129418_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
2763	chr2	+	3881	4	ISM	ENSMUSG00000027405.17	ENSMUST00000150745.9	3627	5	2	5	0	0	intron_retention	FALSE	canonical	3	1993	junction_1	286.856913615288	105	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582
2764	chr4	+	2909	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	68	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	127.689401805057	1	65	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576941	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597210_147597294_147597648_147597785_147598217_147599053
2766	chr16	+	3085	20	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-3	0	intron_retention	FALSE	non_canonical	0	0	junction_17	704.750339873098	197	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470450	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480656_20480842_20480970_20481371_20481491_20481812
2767	chrX	-	6351	14	FSM	ENSMUSG00000040363.16	ENSMUST00000115512.9	6887	14	527	9	527	-6	multi-exon	FALSE	canonical	3	23	junction_10	50.3691696818388	3	89	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGAGCAAATTGAAGTA	NA	False	NA	NA	False	NA	NA	NA	11946265	11902987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11922582_11925430_11926368_11926448_11927760_11927886_11946056
2769	chr7	-	4161	20	NIC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	1234	junction_19	95.4820979290398	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143153819	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143125220_143125334_143128249_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
2770	chr13	-	2768	14	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2590.86606113584	2	12	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	4758	False	NA	NA	False	NA	NA	NA	58550323	58538955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
2771	chr11	-	4386	13	NIC	ENSMUSG00000001036.18	novel	4317	11	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	3	15	junction_11	144.460202131937	6	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGATGTGGGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	61470482	61408080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61438833_61438869_61444335_61444406_61456647_61456721_61470392
2772	chr4	-	3936	2	ISM	ENSMUSG00000041459.16	ENSMUST00000190696.7	1411	5	6971	-2563	-449	-6	3prime_fragment	FALSE	canonical	3	1125	junction_1	0	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACAGTTTAGTGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	148704256	148699928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_148703249_148703640
2773	chr7	-	4347	4	NNC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	72.2787812723916	163	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTCATTAGTAATTTGT	NA	False	NA	NA	False	NA	NA	NA	42516671	42466250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42470287_42471782_42471844_42472041_42472168_42516547
2779	chr6	-	3220	16	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	1	31	junction_6	912.36107374706	1773	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	NA	False	NA	NA	NA	88875677	88860455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864544_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
2782	chr12	+	4238	13	NIC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-7	853	intron_retention	FALSE	canonical	0	0	junction_1	96.3245382374951	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAACTCCGTCTTAAGT	NA	False	NA	NA	False	NA	NA	NA	85157659	85182472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_85157734_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
2783	chr16	+	4758	18	NIC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	104.742194628717	386	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGACTTGTCGGACTC	8022	False	NA	NA	False	NA	NA	NA	32427802	32451604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32427855_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
2785	chr2	-	4409	3	ISM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	10773	2	-485	-2	3prime_fragment	FALSE	canonical	3	593	junction_2	26	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGGCTTGTGTGTATG	3414	False	NA	NA	False	NA	NA	NA	168598348	168590253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168592381_168594373_168594661_168596353
2786	chr2	+	3045	15	NIC	ENSMUSG00000027067.17	novel	2721	17	NA	NA	-34	3	intron_retention	FALSE	canonical	3	1260	junction_5	131.488728468587	134	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTATGTCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	84867842	84877456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
2788	chr1	+	3579	11	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	14	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	543.193004373215	1	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATACTACGTACTGTGT	905	False	NA	NA	False	NA	NA	NA	58432304	58446503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442897_58444094
2789	chr3	+	5110	19	FSM	ENSMUSG00000007379.16	ENSMUST00000172288.3	4979	19	-159	28	-159	-21	multi-exon	FALSE	canonical	2	20	junction_1	61.6686686361723	316	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACAGATAAAGGCATTT	4558	False	NA	NA	False	NA	NA	NA	103034712	103077026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103034967_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
2790	chr2	+	4428	34	FSM	ENSMUSG00000038685.19	ENSMUST00000054622.15	4401	34	-27	0	-4	0	multi-exon	FALSE	canonical	3	57	junction_31	50.0269348938753	2	76	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	180961527	180998409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
2791	chrX	-	3403	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3359	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	412.664815558584	1141	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227933	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851_23185035_23227732
2792	chr5	-	3483	12	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-61	0	intron_retention	FALSE	canonical	3	1644	junction_9	213.231996420614	19	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2259	False	NA	NA	False	NA	NA	NA	138170141	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
2793	chr10	+	4537	4	NIC	ENSMUSG00000019970.16	novel	3096	14	NA	NA	9	0	intron_retention	FALSE	canonical	3	881	junction_2	60.785597709399	3	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21870590	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870941_21871372_21871798_21871924_21873953_21874058
2794	chr1	+	4506	28	NNC	ENSMUSG00000041763.15	novel	4631	29	NA	NA	-7	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	79.2852501517929	22	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTGGTCTTAATTTTTCA	3323	False	NA	NA	False	NA	NA	NA	43973185	44042164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022454_44029686_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
2796	chrX	+	2948	11	ISM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	339	5	159	-5	3prime_fragment	FALSE	canonical	3	3075	junction_3	311.365958319146	22	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473499	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
2797	chr13	-	2495	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2647.57887612918	25	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	4804	False	NA	NA	False	NA	NA	NA	58550277	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542457_58543413_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
2798	chrX	+	4357	14	FSM	ENSMUSG00000031256.12	ENSMUST00000113287.8	3661	14	80	-776	-44	3	multi-exon	FALSE	canonical	3	157	junction_8	147.051615138335	599	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACTTAGAAATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	132960015	132987571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
2799	chr12	-	3717	4	Intergenic	novelGene_4324	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_3	17.5562587763516	109	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	22506840	22495278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_22498722_22500163_22500225_22500426_22500554_22506754
2800	chr2	-	4030	7	NIC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-7	-428	intron_retention	FALSE	canonical	0	0	junction_4	429.458347482293	8	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCTAAAGAATTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	154916374	154901657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154906847_154907456_154907607_154909242_154910939_154916284
2802	chr19	-	5128	24	FSM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	123	-1803	44	-469	multi-exon	FALSE	canonical	2	185	junction_5	71.1727842464471	4	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTTTTAATAACTAAAT	NA	False	NA	NA	False	NA	NA	NA	23251138	23184283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
2803	chr16	-	1709	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	19	113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1309.68721339821	10	8	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292728	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283329_87283505_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
2804	chr6	+	5769	21	ISM	ENSMUSG00000030016.15	ENSMUST00000032088.14	6199	28	-18	12192	0	5226	5prime_fragment	FALSE	canonical	3	182	junction_11	47.9198288811636	223	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTACAGCTCCAAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	83891355	83951439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227
2808	chr12	+	6216	24	NIC	ENSMUSG00000042700.17	novel	8215	23	NA	NA	-36	-8	combination_of_known_junctions	FALSE	canonical	3	101	junction_3	21.8092781282731	160	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCTCAAATGTGAATGT	NA	False	NA	NA	False	NA	NA	NA	82216157	82497037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_82216278_82216789_82216851_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
2809	chr19	+	3650	12	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-6	-4	intron_retention	FALSE	canonical	3	438	junction_4	145.570976128173	147	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAATGTGTTCAGAGTTA	238	False	NA	NA	False	NA	NA	NA	46064402	46073963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072283_46072450
2810	chr18	+	4602	11	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26617	1910	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	402.719766090516	1	89	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6468	False	NA	-54	True	NA	NA	NA	77126286	77243406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185107_77214559_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
2811	chr19	-	3485	19	FSM	ENSMUSG00000025007.14	ENSMUST00000025979.13	3527	19	42	0	2	0	multi-exon	FALSE	canonical	3	945	junction_12	98.5252364738204	1012	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576865	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
2813	chr1	-	2617	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2064.26858545573	18	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTTGCCAGACTTAATA	NA	False	NA	NA	False	NA	NA	NA	86287119	86278222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285282_86285735_86285946_86286927
2814	chr2	+	3546	6	NIC	ENSMUSG00000027405.17	novel	2960	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	1993	junction_1	242.270097205578	525	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130119891_130120075
2815	chr9	-	4363	22	FSM	ENSMUSG00000032480.18	ENSMUST00000199529.5	4373	22	7	3	-4	0	multi-exon	FALSE	canonical	3	162	junction_20	127.405044450657	102	40	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGCTGTCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	109946494	109913390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944651_109946425
2816	chr6	-	5125	27	NNC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	-446	-8	intron_retention	FALSE	canonical	2	3	junction_26	145.282366364027	3	91	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	71610420	71566028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71593801_71593855_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71610347
2817	chrX	+	2735	22	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	7	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1065.98449487348	15	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524666	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536843_20536989_20537113_20537594_20537634_20539176_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
2818	chr12	+	3541	6	Genic_Genomic	ENSMUSG00000113724.2_ENSMUSG00000116815.2	novel	1785	1	NA	NA	-61	1703	multi-exon	TRUE	non_canonical	0	0	junction_2	11.1067547015319	8	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTATTTGGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	18660323	18701702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_18660512_18696480_18696608_18696807_18696869_18698202_18699090_18699341_18700444_18700526
2819	chr10	+	4234	17	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	8507	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	371.851653678923	200	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAAAAATGTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	21180463	21244788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21180543_21183483_21183679_21184997_21185214_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21242199_21243540_21243686_21244187
2821	chr7	+	4212	4	NNC	ENSMUSG00000074887.5	novel	1428	4	NA	NA	-2	2913	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	125.489264702426	2	60	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAATATAATTATAATCT	9996	False	NA	NA	False	NA	NA	NA	42863460	42879179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873377_42875257
2823	chr12	-	3730	4	Intergenic	novelGene_4325	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_3	17.5562587763516	8	51	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTAACTCCTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	22506861	22495286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_22498722_22500163_22500225_22500426_22500554_22506754
2824	chr9	-	1684	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1056	4	20	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	128	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8156	False	NA	-24	True	NA	NA	NA	78387950	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
2825	chr2	+	5391	11	NIC	ENSMUSG00000027397.15	novel	3316	11	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	19	junction_5	173.636430509268	18	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAAAATTTCTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	129040719	129053526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129046165_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
2827	chr11	-	3461	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1520.69794393443	11	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106672906_106672961_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676119_106676218_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
2830	chr9	-	4110	18	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_17	307.897446189867	234	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGCCTGTGGAGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	108526561	108480144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521565_108522131_108522194_108523130_108523296_108526427
2831	chr13	-	2908	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	487.153859322762	126	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498341	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471359_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
2832	chr14	+	4393	21	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	484.724158671713	2	80	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTGTGGTCTAAATATC	NA	False	NA	NA	False	NA	NA	NA	19801351	19861852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801413_19802521_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853238_19855343_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
2833	chr9	+	3949	4	NNC	ENSMUSG00000007656.14	novel	540	4	NA	NA	-12	0	intron_retention	FALSE	canonical	3	14	junction_1	2732.02737093821	35	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGTTTTGTCTTATTT	NA	False	NA	-50	True	NA	NA	NA	74945186	74967595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_74945244_74950490_74950581_74959514_74959638_74963916
2835	chr3	-	3980	25	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	162.851153707577	788	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTTATGTGTCCTGT	1857	False	NA	NA	False	NA	NA	NA	27207980	27151373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172028_27176158_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
2836	chr12	-	2709	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4138.75546632076	2	73	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	110662724	110657461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659789_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
2837	chr2	+	3720	21	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	193.045616370846	291	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7253	False	NA	NA	False	NA	NA	NA	29779856	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
2838	chr11	+	1878	8	Antisense	novelGene_ENSMUSG00000000751.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCACAGGGAAGGACAGAAG	NA	False	NA	NA	False	NA	NA	NA	75191228	75203885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75192229_75193492_75193581_75196933_75197041_75197939_75198117_75200957_75201096_75203128_75203274_75203517_75203659_75203803
2839	chr5	+	2820	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	824.87387924862	194	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493859	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574
2840	chrX	-	5129	6	NIC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	9	2	intron_retention	FALSE	canonical	3	944	junction_2	389.309337160053	10	74	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72308987	72298143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72299035_72299128_72299225_72301241_72305146_72306028_72306099_72306921_72307059_72308956
2842	chr2	+	4025	15	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-52	-9	intron_retention	FALSE	canonical	3	1260	junction_6	149.654585288788	4	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTGGAAACGATGTCC	NA	False	NA	NA	False	NA	NA	NA	84867525	84877441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84875925_84876027_84876117_84876596_84876784_84876989
2843	chr11	-	945	4	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2998.88023546568	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120239286	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120237248_120238653_120238702_120238794_120238924_120239250
2844	chr2	-	2472	18	ISM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	28	6432	22	1356	5prime_fragment	FALSE	canonical	0	0	junction_11	165.555915767679	42	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAACTACTGACTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	127673757	127649476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
2845	chr5	+	4119	23	NNC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_5	282.723827076344	21	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	NA	False	NA	NA	NA	139186452	139235550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186519_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212433_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
2846	chr14	+	3246	18	NNC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	-498	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	68.2168839261598	3	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGCCAAAGACTGCAAAC	NA	False	NA	NA	False	NA	NA	NA	21531501	21720443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21531622_21542100_21542221_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714727_21720345
2847	chr16	+	3506	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	9	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	252.926604539638	10	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTCCGTGACTACTGTG	NA	False	NA	NA	False	NA	NA	NA	13598585	13632693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13632343_13632399
2848	chr15	+	1866	2	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98464	-144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	407	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATAGTGCTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	98829307	98935847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98830387_98935060
2850	chr10	-	638	2	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	7930	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATTTAGTTCTTGGT	4411	False	NA	NA	False	NA	NA	NA	62418026	62416036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62416594_62417945
2851	chrX	-	3244	7	ISM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	16153	-5	2849	5	3prime_fragment	FALSE	canonical	3	893	junction_3	51.7775691459793	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCACATTTTTTCCCA	NA	False	NA	NA	False	NA	NA	NA	37529178	37508378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007
2853	chr4	+	1822	6	NNC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	22805	5529	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	82	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCCACAGAGGGTCCAG	NA	False	NA	83	True	NA	NA	NA	122752851	122758497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_122754011_122755726_122755867_122756193_122756281_122756415_122756541_122756692_122756881_122758374
2854	chr9	+	963	7	NNC	ENSMUSG00000032294.18	novel	2113	8	NA	NA	-2	1059	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6767.64859254839	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGGCTCAGAAGATGATG	1892	False	NA	NA	False	NA	NA	NA	59563878	59578940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59577998_59578857
2855	chr15	-	4263	19	ISM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	67567	8	-4829	-8	3prime_fragment	FALSE	canonical	3	403	junction_18	62.0573211725346	332	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTACTCTTTGGTGTCT	1038	False	NA	NA	False	NA	NA	NA	77658808	77644794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756
2856	chr17	-	5628	11	Antisense	novelGene_ENSMUSG00000007564.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	72	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGATCGGGCGGGGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	21186073	21165716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21165844_21171602_21171694_21174874_21179095_21179199_21179270_21179647_21179784_21180725_21180902_21181214_21181275_21181845_21182002_21182835_21182976_21185497_21185590_21185713
2858	chr12	-	2768	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	86	427	-20	-4	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	2	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTGTGGAATGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	110662743	110657465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
2859	chr19	+	4150	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	25	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	904.189555059828	1	124	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGAAACTCTTATTGGT	691	False	NA	NA	False	NA	NA	NA	10583011	10607177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585851_10588065_10588185_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
2860	chr11	+	2955	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	48	1917	43	1205	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	965	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCATGGAAGCAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	4110397	4130624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
2862	chr11	-	5618	9	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	109	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAAGCGGGCGCCTGCGC	1331	False	NA	NA	False	NA	NA	NA	50277350	50268595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50268636_50269117_50269252_50270293_50273541_50273624_50273697_50273752_50273888_50274005_50274142_50274506_50275563_50275966_50276016_50276601
2863	chr14	+	4398	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	12	-2	combination_of_known_junctions	FALSE	canonical	3	329	junction_36	142.740216389776	54	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886784	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
2864	chr14	-	2816	8	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1238.64623270566	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8709	False	NA	NA	False	NA	NA	NA	52341501	52310833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
2865	chr10	+	4638	3	FSM	ENSMUSG00000019970.16	ENSMUST00000141218.8	347	3	0	-4291	0	1	multi-exon	FALSE	canonical	3	717	junction_1	108.5	6	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCATAAATTGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870725_21870864_21870941_21871372
2866	chr10	+	2785	11	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-13	1	intron_retention	FALSE	canonical	3	966	junction_5	270.853115174997	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTCCCTGAGCCCTTC	727	False	NA	NA	False	NA	NA	NA	79694592	79700194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79694659_79694785_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
2867	chr2	-	1060	11	NNC	ENSMUSG00000034278.4	novel	1008	11	NA	NA	-54	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	103.574369416376	827	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGTCTACTTTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	119039330	119002984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011447_119014073_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
2871	chr9	+	4715	23	NIC	ENSMUSG00000032267.9	novel	4133	24	NA	NA	9	0	intron_retention	FALSE	canonical	3	612	junction_8	79.5760071195515	15	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	NA	False	NA	NA	NA	48896693	48953810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48949192_48950281_48950478_48952673
2872	chr9	-	5579	29	NNC	ENSMUSG00000035941.16	novel	5650	29	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	46.9987380421115	194	19	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTCTAGCGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85631362	85569413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590181_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
2873	chr8	-	3522	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	88	183	-2	-183	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	8	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438281	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
2874	chr16	-	4033	16	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	-20	intron_retention	FALSE	canonical	3	32	junction_13	385.78506393529	6	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAACATTTCTTGGT	8110	False	NA	NA	False	NA	NA	NA	4867727	4831792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866093_4866218_4866613_4866651_4867669
2876	chrX	+	4549	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12772	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	115.240242970934	241	17	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGATGTTATTTTGCT	8047	False	NA	NA	False	NA	NA	NA	159932973	160041214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933142_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
2877	chr15	-	1857	2	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	-103401	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	384	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTCAAAGTAAAAGCTTTAA	1553	False	NA	NA	False	NA	NA	NA	98935847	98829334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830321_98934976
2882	chr14	+	3448	18	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	12637	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	307.348905124077	1	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGCATTACTTCATTA	NA	False	NA	NA	False	NA	NA	NA	121165895	121185411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178381_121179118_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
2884	chr15	-	2862	15	NIC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	83	junction_1	1540.43655354909	6267	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	377	False	NA	NA	False	NA	NA	NA	36609217	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36596344_36596762_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
2885	chr5	+	3008	5	NNC	ENSMUSG00000029267.18	novel	706	4	NA	NA	-4938	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	725.742550771277	8	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTAAAAGAGCTAATGA	NA	False	NA	NA	False	NA	NA	NA	108208601	108256860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108221172_108221339_108252291_108252397_108254453
2886	chr5	+	1211	1	FSM	ENSMUSG00000093355.3	ENSMUST00000175614.3	121	1	-405	-685	-405	685	mono-exon	FALSE	NA	NA	NA	NA	NA	1447	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTTCACTTGTTC	NA	False	NA	NA	False	NA	NA	NA	74253785	74254996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_74253800_74255000
2887	chr12	-	2165	8	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	1591	14	-406	-14	3prime_fragment	FALSE	canonical	3	11114	junction_7	1693.940364707	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGATAAAAAGAAGTGTGG	NA	False	NA	-89	True	NA	NA	NA	110661132	110657475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004
2888	chr11	-	1903	5	Antisense	novelGene_ENSMUSG00000018583.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTCCGGTTCTGGTTCC	7625	False	NA	NA	False	NA	NA	NA	55391698	55386134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_55386271_55386960_55387070_55388474_55388589_55388738_55388867_55390282
2889	chr19	+	3453	22	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-5	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	273.919630035565	29	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAATTGGATGTCTGAA	1888	False	NA	NA	False	NA	NA	NA	8875459	8894029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879990_8886067_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
2891	chr11	-	3917	11	NNC	ENSMUSG00000018428.16	novel	3721	11	NA	NA	212	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	272.1683302664	835	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88754331	88721617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88753982
2892	chr2	+	2983	16	ISM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	216	5	-1	-2	3prime_fragment	FALSE	canonical	3	1260	junction_6	129.702223059848	170	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGATGTCCTTATGTC	NA	False	NA	NA	False	NA	NA	NA	84867793	84877448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
2893	chr6	-	3792	16	NNC	ENSMUSG00000040669.15	novel	3893	15	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	289.893053076858	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTTGGCCTCCATTGT	9081	False	NA	NA	False	NA	NA	NA	122316612	122294705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302561_122302647_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
2894	chr19	+	3763	25	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	5	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	351.265292272885	29	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATTGGATGTCTG	1909	False	NA	NA	False	NA	NA	NA	8875480	8894027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879997_8882372_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
2896	chr11	-	3316	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_16	418.197765529361	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	352	False	NA	NA	False	NA	NA	NA	106615292	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
2897	chr12	+	2629	4	Genic_Genomic	ENSMUSG00000116705.2	novel	393	1	NA	NA	-536054	226975	multi-exon	TRUE	non_canonical	0	0	junction_1	0	56	68	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTATTTTTATTGAAT	NA	False	NA	NA	False	NA	NA	NA	18922294	19685716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_18923663_19126334_19126393_19458452_19459443_19685503
2898	chr16	-	4005	15	NNC	ENSMUSG00000052459.14	novel	4234	15	NA	NA	-7	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	125.08994722982	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACTTTTCTTTCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	43959675	43905768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_43907787_43909407_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
2899	chr8	+	1539	11	ISM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	133	5976	133	-2508	5prime_fragment	FALSE	canonical	3	1402	junction_7	116.851230203195	2	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTACGTCTCGGGCTAGGC	NA	False	NA	NA	False	NA	NA	NA	75836384	75848340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165
2900	chrX	+	4510	16	NIC	ENSMUSG00000031256.12	novel	4502	14	NA	NA	5	3	combination_of_known_splicesites	FALSE	canonical	2	2	junction_10	269.99930864109	477	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACTTAGAAATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	132960087	132987571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973163_132973224_132973426_132973514_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
2901	chr5	+	3797	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	-46	-37	-40	-8	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGCTTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	139186351	139235587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
2902	chr12	+	3049	28	NNC	ENSMUSG00000021048.8	novel	738	5	NA	NA	5487	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	277.984535397995	5	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	590	False	NA	NA	False	NA	NA	NA	76307740	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76307796_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
2903	chr6	-	3641	24	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	141.223414949706	6	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	13	True	NA	NA	False	NA	NA	NA	29609828	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29540958_29541509_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
2904	chr14	+	4386	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_40	192.694810516526	24	18	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCACTCTGATTGTCGT	NA	False	NA	NA	False	NA	NA	NA	47886786	47974018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
2907	chr10	-	3049	9	NNC	ENSMUSG00000075232.7	novel	3204	8	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	147.034009671232	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAGAAAGTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	40178182	40163459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744_40177950_40178098
2908	chr16	+	4565	10	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_9	184.193403455561	498	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	84631820	84660667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657355
2909	chr10	+	2751	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_11	442.182360197036	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGTTTGAGCTTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	128173685	128198343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836_128196998_128197084
2910	chr4	-	2985	15	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	-4	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	348.329402217182	14	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAACAAAGCCCTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	116484679	116458254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461462_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
2911	chr17	-	3410	2	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	9262	-8	intron_retention	FALSE	canonical	3	483	junction_1	0	2	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACATAGTCAGTTGCCGC	3608	False	NA	NA	False	NA	NA	NA	53987044	53981821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_53984125_53985937
2912	chr8	-	3776	17	NIC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	0	6	intron_retention	FALSE	canonical	3	416	junction_13	66.9152624126215	723	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73228979	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73224072_73224714_73224900_73228455_73228630_73228901
2913	chr15	-	2612	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	292	-619	292	-180	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	36	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCCTACCGAGTATTTCC	-1	True	NA	NA	False	NA	NA	NA	36794483	36771193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
2914	chr19	-	5057	12	FSM	ENSMUSG00000025154.16	ENSMUST00000177495.2	1652	12	0	-3405	0	-1	multi-exon	FALSE	canonical	3	21	junction_5	104.114844409653	313	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGGGTTCTGACTGGT	4527	False	NA	NA	False	NA	NA	NA	41790486	41755027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769744_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
2915	chrX	+	3941	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	26	724	26	-724	multi-exon	FALSE	canonical	3	535	junction_3	101.202320735358	5	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799449	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
2916	chr19	+	4242	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-38	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	672.619392846457	1	136	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	592	False	NA	NA	False	NA	NA	NA	10582912	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605227_10605784_10605913_10606442
2917	chr16	+	2874	21	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-13	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	700.658138823778	107	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTCTCTGTCTATTTCC	NA	False	NA	NA	False	NA	NA	NA	20470440	20482161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478299_20478453_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
2921	chr3	-	3617	28	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	281.298112787639	5	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTACCTTCAGCCTCTGC	3547	False	NA	NA	False	NA	NA	NA	89959782	89907599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907991_89909728_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
2924	chrX	-	4458	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	66	0	-47	0	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	109	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105055439	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
2926	chrX	-	3274	10	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	389.833899418461	845	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231292	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732_23227824_23231194
2927	chr4	-	3517	17	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	373.368764594737	2	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGAACATTGCCACTCA	NA	False	NA	NA	False	NA	NA	NA	135080463	135047804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059477_135065142_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
2928	chr1	+	4868	32	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	837.214389151731	1	163	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095254	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118527_185119255_185119316_185126559_185126653_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133870_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
2929	chr16	+	4390	20	NNC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	101.893295988073	174	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGACTTGTCGGACTC	8020	False	NA	NA	False	NA	NA	NA	32427800	32451604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911_32450119_32450547
2930	chr8	+	3204	13	NIC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_2	415.485350390226	304	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8842	False	NA	NA	False	NA	NA	NA	120637567	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_120637679_120658587_120658657_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
2931	chr11	+	5006	10	NIC	ENSMUSG00000017421.19	novel	2245	11	NA	NA	0	2219	intron_retention	FALSE	canonical	3	695	junction_8	108.672915066891	88	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCAAGTGGGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	80274156	80289293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80286088_80286215
2932	chr11	-	3809	4	NIC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	-18	-4	intron_retention	FALSE	canonical	3	62	junction_3	611.902134513537	75	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCACTTTCTCCCCCCTCT	NA	False	NA	NA	False	NA	NA	NA	96713569	96708243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96711343_96712076_96712236_96712929_96713146_96713234
2933	chr9	+	451	1	Intergenic	novelGene_1087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTGTATACCTCTACT	7208	False	NA	NA	False	NA	NA	NA	59585516	59585967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_59585500_59586000
2935	chr11	-	3357	18	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9034	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	541.095390345628	1520	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	390	False	NA	NA	False	NA	NA	NA	106615254	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106553443_106553483_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
2936	chr9	-	1220	14	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	9	-38	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	135.343350354597	2	16	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCCCTGCCCAGTAATA	NA	False	NA	NA	False	NA	NA	NA	106315351	106310227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
2938	chr11	-	3603	23	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	818.461745043208	6	74	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	NA	False	NA	NA	NA	100418692	100367178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100405878_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
2939	chr14	+	4418	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	34	1	combination_of_known_splicesites	FALSE	canonical	3	21	junction_40	195.738906135188	270	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGACTCACTCTGATTGT	NA	False	NA	NA	False	NA	NA	NA	47886806	47974015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971724_47973556
2940	chrX	+	3776	18	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	82	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCCCGAAGCCAGGGTGT	NA	False	NA	NA	False	NA	NA	NA	49652171	49724143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49653175_49669763_49669992_49684052_49684493_49687010_49687053_49689620_49689773_49691652_49691790_49692239_49692403_49694884_49695041_49695842_49695981_49697353_49697487_49697576_49697689_49700973_49701118_49701580_49701727_49704236_49704424_49706774_49706853_49715298_49715387_49719767_49719877_49723823
2941	chr2	-	5123	4	NIC	ENSMUSG00000027547.18	novel	5073	4	NA	NA	-209	-22	intron_retention	FALSE	canonical	3	69	junction_3	260.140133176119	610	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAATGTTTTCCCTCCAT	NA	False	NA	NA	False	NA	NA	NA	168607375	168590273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_168592381_168594373_168594661_168596353_168598721_168607013
2945	chr1	+	3460	21	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	14	0	intron_retention	FALSE	canonical	0	0	junction_1	486.650991471301	4	31	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3161	False	NA	NA	False	NA	NA	NA	180396507	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396602_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
2947	chr8	+	3707	20	NNC	ENSMUSG00000004565.16	novel	4438	34	NA	NA	24	-116	intron_retention	FALSE	canonical	3	15	junction_1	54.4454287258469	2	57	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGTATGAGAAGGTTTT	NA	False	NA	NA	False	NA	NA	NA	3566897	3586545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3567143_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819
2948	chr16	+	4352	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	64	9	64	-9	multi-exon	FALSE	canonical	3	981	junction_2	152	856	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGAAATCATATTTTGT	NA	False	NA	NA	False	NA	NA	NA	64672422	64679861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_64672600_64673161_64673389_64675913
2949	chr6	+	4944	9	NNC	ENSMUSG00000107230.2	novel	894	3	NA	NA	-17868	-40262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	36	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGGGCGCATGCGCCTTG	4944	False	NA	NA	False	NA	NA	NA	85920736	85938646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85924759_85926599_85926779_85926998_85927076_85927495_85927543_85929286_85929348_85930352_85930476_85935564_85935697_85936197_85936276_85938421
2950	chr12	+	3355	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	-114	0	-114	0	multi-exon	TRUE	canonical	3	837	junction_20	135.484134190258	2403	5	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7797	False	NA	NA	False	NA	NA	NA	76301957	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
2952	chr2	-	3786	29	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	69.8042452366704	27	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCCTGCAGTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	103591563	103551602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584442_103584576_103587513_103587606_103588015_103588139_103591393
2953	chr19	+	3187	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1447	False	NA	NA	False	NA	NA	NA	44282492	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291675_44293562
2954	chr17	-	1846	9	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	1358	675	-331	408	internal_fragment	FALSE	canonical	3	9221	junction_3	891.627444620229	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATGGGCTACATGATGG	NA	False	NA	NA	False	NA	NA	NA	45882839	45879375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
2955	chr17	+	3875	10	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	24	3	intron_retention	FALSE	non_canonical	0	0	junction_6	744.914528198362	8	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460804	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468310_35468350_35470355_35471722_35472085_35472182_35472331_35472448
2956	chr1	+	1525	9	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	2	intron_retention	FALSE	canonical	3	1206	junction_5	1580.99887333926	64	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGTGTGCATTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	160862735	160866111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864735_160864857_160864886_160865074_160865608_160865794_160865843_160866026
2959	chr9	+	4594	8	NNC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	-3	2785	intron_retention	FALSE	canonical	0	0	junction_7	999.919527374323	507	54	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTGTGTTCAAAACTGG	9562	False	NA	NA	False	NA	NA	NA	64188881	64215491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208490_64211588
2960	chr14	+	3837	23	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-22	-9	intron_retention	FALSE	canonical	3	463	junction_11	40.8649509344626	117	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAAAGCCCTGCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	32043953	32070099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32067140_32068354_32068519_32068655_32068811_32069462
2961	chr13	-	3304	13	NNC	ENSMUSG00000032745.19	novel	3694	13	NA	NA	176	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	322.697183474263	5	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	NA	False	NA	NA	NA	111626386	111562213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577296_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
2963	chr4	-	3610	17	NIC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	15	2	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	370.012584245455	112	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080498	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135048766_135049600_135049811_135051224_135051373_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
2964	chr4	-	3035	16	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	716.125501105311	22	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	-6	True	NA	NA	False	NA	NA	NA	43000474	42979962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983543_42984621_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
2965	chr9	-	1681	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1059	4	23	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8159	False	NA	-21	True	NA	NA	NA	78387947	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
2966	chr18	-	2569	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	13	-225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1567.50556219109	10	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	212	False	NA	NA	False	NA	NA	NA	35087397	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073922_35075083_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
2967	chr2	+	3217	15	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	3	1	intron_retention	FALSE	canonical	3	1260	junction_6	149.936585234681	223	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGATGTCCTTATGTCTCC	NA	False	NA	NA	False	NA	NA	NA	84867580	84877451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870800_84870902_84871134_84871262_84871367_84871451_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
2968	chr17	-	2113	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	1	intron_retention	FALSE	non_canonical	0	0	junction_1	4636.03612033933	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878876_45879307_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881361_45881437_45881493_45881591_45881726_45881943_45882104_45882336_45882546_45882690_45882838_45884092
2969	chr17	+	2954	5	NNC	ENSMUSG00000060149.8	novel	1598	4	NA	NA	71	67398	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	69.7723978375403	13	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGTATGCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	17171884	17261817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17171971_17228557_17228679_17257537_17257665_17257906_17257968_17259258
2970	chrX	+	3747	12	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	318.281594745469	98	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139647	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95194237_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
2971	chr18	-	2772	16	NIC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_14	1703.51520751129	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649708	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64647885_64647936_64648396_64648480_64649486
2972	chr15	+	402	4	NNC	ENSMUSG00000009585.19	novel	826	5	NA	NA	32	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	310.962305682788	27	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGGAAGAAGTCAAAGAAAG	7569	False	NA	NA	False	NA	NA	NA	79775926	79792091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79776024_79779611_79779760_79781895_79781988_79792026
2973	chr17	-	3856	15	NIC	ENSMUSG00000024045.7	novel	4570	14	NA	NA	-2	-7	combination_of_known_junctions	FALSE	canonical	3	51	junction_6	184.187792367309	979	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGAAGACATTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	32540135	32522654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32532078_32532237_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
2974	chr2	-	3300	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	73	-1300	-3	2	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	1194	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTGTGTGCATGTGATA	NA	False	NA	NA	False	NA	NA	NA	125700986	125672221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
2975	chr8	-	4385	13	NNC	ENSMUSG00000033596.6	novel	4443	13	NA	NA	14	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	124.482344799038	523	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTCTTCCCAGTGTCTT	5510	False	NA	NA	False	NA	NA	NA	112026840	111997582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017552_112020640_112020808_112023766_112024275_112026766
2976	chr16	+	4324	3	NNC	ENSMUSG00000054604.8	novel	4425	3	NA	NA	41	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490.5	13	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTCTAAAGTTTTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	64672399	64679851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_64672578_64673180_64673389_64675913
2977	chr13	-	2698	14	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2763.56610369057	39	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	5124	False	NA	NA	False	NA	NA	NA	58549957	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58549877
2978	chr4	+	3400	20	NNC	ENSMUSG00000052407.18	novel	4549	26	NA	NA	33	-102301	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	4.60278128612115	10	69	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAATTGCACTCCAGCG	8722	False	NA	NA	False	NA	NA	NA	83443814	83614612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_83444008_83454026_83454175_83465070_83465207_83467839_83468015_83472930_83473122_83498984_83499132_83519844_83519938_83522258_83522420_83539061_83539201_83553876_83553980_83573764_83573872_83575548_83575639_83576557_83576759_83579952_83580121_83581738_83581928_83599241_83599747_83600535_83600653_83611983_83612211_83612489_83612673_83614485
2980	chr10	+	2527	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	443.8353689272	11	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173670	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836_128197674_128198002
2981	chr15	-	2977	12	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-154	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	739.947273082447	30	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283949	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81261969_81262155_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
2982	chr5	-	3705	13	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-11	-3	intron_retention	FALSE	canonical	3	1644	junction_11	204.585132374982	10	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTGCTTGTTAATAAC	2886	False	NA	NA	False	NA	NA	NA	138169514	138162864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578
2983	chrX	-	3155	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	430.236570008687	3	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227934	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086936_23087067_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
2984	chr18	+	3536	12	NNC	ENSMUSG00000024576.15	novel	1222	11	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	880.401467400897	119	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGAGGCTGGTTGTCTCT	482	False	NA	NA	False	NA	NA	NA	61688398	61723134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496_61721705_61722283
2987	chr11	+	4020	13	NIC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-4	-8	intron_retention	FALSE	canonical	3	655	junction_8	74.5543705403423	7	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAACTGGCTTGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	74788919	74800160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796850_74798160_74798278_74798649_74798947_74799053
2988	chrUn_JH584304v1	-	3603	6	Intergenic	novelGene_4667	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	111	junction_2	261.163090807258	1	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	60191	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55249_55464_55702_56985_57152_58563_58836_59591
2989	chr11	+	5259	21	FSM	ENSMUSG00000035152.15	ENSMUST00000065692.14	3269	21	37	-2027	37	4	multi-exon	FALSE	canonical	3	171	junction_14	24.9631728752577	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGGTATGGACTTTGT	2287	False	NA	NA	False	NA	NA	NA	83193636	83295865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
2990	chr18	-	4679	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	-7	4	-7	-4	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	461	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAAATTGGTTTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	66135717	66113831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
2991	chr17	-	3857	14	NIC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	-3	0	combination_of_known_junctions	TRUE	canonical	3	70	junction_13	146.652106144734	932	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTGTGTTCATTAATT	NA	False	NA	NA	False	NA	NA	NA	32539660	32522647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32539431
2993	chr5	-	3196	19	NNC	ENSMUSG00000086247.8	novel	1250	3	NA	NA	-2071	18515	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	53	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAACAGACATCTCGGGT	NA	False	NA	NA	False	NA	NA	NA	110319833	110283750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110283800_110283915_110284059_110287980_110288054_110288217_110288318_110291414_110291527_110292456_110292516_110292636_110292853_110294334_110294499_110299390_110299551_110300199_110300355_110300981_110301144_110302699_110302846_110306659_110306785_110308021_110308107_110310575_110310646_110311869_110311957_110315986_110316094_110317003_110317081_110318727
2998	chr2	+	5506	28	NNC	ENSMUSG00000027598.17	novel	5309	26	NA	NA	-2	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	66.6596292581912	8	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTGCCTTTTCGTCTGC	NA	False	NA	NA	False	NA	NA	NA	154975448	155068774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_154975506_154978950_154979019_154979070_154979169_154980115_154980193_154999693_154999896_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
2999	chr2	-	4204	19	NNC	ENSMUSG00000039671.19	novel	5072	22	NA	NA	402	1	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_18	174.693461685192	41	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	165703523	165626073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165703460
3002	chr3	-	4119	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	581	junction_24	64.5165784034529	868	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1808	False	NA	NA	False	NA	NA	NA	27208029	27151370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
3003	chr11	+	3608	13	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	175	intron_retention	FALSE	canonical	3	4673	junction_2	346.489087129739	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAACTCCATATTAACTT	NA	False	NA	NA	False	NA	NA	NA	22940625	22953326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
3005	chr9	-	6689	7	Antisense	novelGene_ENSMUSG00000037257.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	104	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCGGGTTCCGCGCCGGC	NA	False	NA	NA	False	NA	NA	NA	63549179	63509971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_63510054_63523967_63524157_63524267_63524366_63524788_63524878_63526427_63526513_63542585_63546425_63546872
3006	chr1	-	6101	23	ISM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	81652	10	-673	-10	3prime_fragment	FALSE	canonical	3	518	junction_2	115.420431610083	521	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCTTTATATCTTGTGT	3207	False	NA	NA	False	NA	NA	NA	153126880	153094677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_153097476_153099404_153099505_153102129_153102289_153103256_153103457_153104480_153104596_153104787_153104938_153106467_153106613_153107479_153107618_153109230_153109311_153110193_153110400_153115000_153115158_153116062_153116242_153117622_153117766_153118374_153118529_153118976_153119223_153122683_153122873_153122982_153123205_153124785_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822
3007	chr15	-	3256	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-60	509	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1556.05845541441	4	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCTTCACGTCTGTTT	698	False	NA	NA	False	NA	NA	NA	36793823	36770504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791087_36791137_36791233_36793722
3008	chr9	-	5735	1	NIC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-466	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	200	142	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110774405	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110768700_110774400
3009	SIRV7	-	2668	7	NIC	SIRV7A	novel	2247	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	1825.38739419579	4248	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147957	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680_114989_147608
3010	chr9	-	450	1	FSM	ENSMUSG00000076138.3	ENSMUST00000102184.3	108	1	-279	-63	-279	63	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATGAGAAATCTGTGTT	9910	False	NA	NA	False	NA	NA	NA	78386196	78385746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78385700_78386200
3011	chr17	-	3120	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234889.2	1898	7	1	-1223	0	-7	multi-exon	FALSE	canonical	3	229	junction_3	729.529623951092	378	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAATCCTGATATTCAG	NA	False	NA	NA	False	NA	NA	NA	80514732	80507515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80512868_80513276_80513458_80514603
3012	chr6	-	4061	22	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-2	0	intron_retention	FALSE	canonical	3	91	junction_20	129.939965206333	64	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	21	True	NA	NA	False	NA	NA	NA	29609820	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586144_29589027_29589229_29609364
3013	chr4	-	5675	14	FSM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	25	10	25	-10	multi-exon	FALSE	canonical	3	106	junction_4	15.2943505832485	372	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTAAATTGTCTTCTT	8859	False	NA	NA	False	NA	NA	NA	129566535	129537782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098_129555233_129566469
3014	chr7	-	4846	6	NNC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	2270	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	299.01063526236	2	98	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCTAAAGCACAAATATAGT	NA	False	NA	-50	True	NA	NA	NA	118452566	118441453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118441619_118441666_118445318_118447671_118447798_118449843_118449913_118451625_118451927_118452032
3015	chr1	-	3005	18	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1087.45135197239	33	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	NA	False	NA	NA	False	NA	NA	NA	128287429	128259329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128271330_128271362_128271994_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
3016	chr10	+	4047	14	Antisense	novelGene_ENSMUSG00002076247.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	432	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCCCGGAGCAGTGGAG	1359	False	NA	NA	False	NA	NA	NA	60934452	60982208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_60936787_60937458_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941299_60942042_60942150_60943355_60943443_60947938_60948069_60949215_60949294_60949788_60949937_60953473_60953540_60959085_60959258_60982039
3017	chr7	-	5792	7	NIC	ENSMUSG00000030741.16	novel	3251	10	NA	NA	-5	0	intron_retention	FALSE	canonical	3	390	junction_5	39.9068359501922	19	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976598	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125975912_125976008
3018	chr4	+	648	5	NIC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	30	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	158.498225542118	1	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGACTCTGTAAACAGTT	NA	False	NA	NA	False	NA	NA	NA	146695447	146742066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_146695586_146697966_146698060_146739355_146739414_146740256_146740384_146741834
3020	chr12	+	4199	22	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	183.268362018671	1	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGTGTAGTGCATATAC	4009	False	NA	NA	False	NA	NA	NA	83679053	83729898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276_83728611_83728792
3021	chr4	+	2004	6	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.4	11	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAGCAGTGGAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	135047799	135056357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054533_135056317
3022	chr2	+	5326	17	Antisense	novelGene_ENSMUSG00000101645.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	17	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCGAGCTTCCAATAGGA	NA	False	NA	NA	False	NA	NA	NA	84431133	84481121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_84433250_84433993_84434097_84438672_84438758_84439300_84439421_84439874_84440066_84440850_84441003_84441106_84441234_84442366_84442444_84443269_84443434_84444231_84444349_84445430_84445619_84446826_84447287_84450261_84450797_84451173_84451331_84452353_84452427_84454613_84454903_84480749
3023	chr13	-	2626	13	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	3087.42150934868	4	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	5125	False	NA	NA	False	NA	NA	NA	58549956	58538955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58549877
3024	chrX	-	1541	8	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.349927106111883	1	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAACCTAAAGAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	143152666	143133748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_143134372_143134766_143134908_143135623_143135762_143136544_143136622_143139789_143139955_143146857_143147100_143150890_143150933_143152553
3025	chr19	+	3267	25	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	13	-1472	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	926.324378480166	1	63	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGGCAAGATTGAGCACT	679	False	NA	NA	False	NA	NA	NA	10582999	10605204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596581_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604604_10604852_10605023_10605125
3026	chr8	-	3621	8	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	19	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	714.812034662231	155	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	125589734	125563701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565620_125565704_125566706_125567186_125567233_125568053_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
3027	chr12	+	3862	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	35	-2553	35	-7	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	5	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCTGAGTCGTTCATG	NA	False	NA	NA	False	NA	NA	NA	86516925	86568392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
3029	chr11	+	4098	18	Antisense	novelGene_ENSMUSG00000005198.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTGTGGACAAACACTCA	3095	False	NA	NA	False	NA	NA	NA	69625167	69634794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69626389_69626470_69626625_69626725_69626841_69626964_69627149_69627597_69627803_69628005_69628189_69628271_69628378_69630251_69630357_69630707_69630951_69631081_69631307_69631823_69632030_69632461_69632566_69632663_69632837_69633197_69633387_69633515_69633735_69634078_69634282_69634414_69634508_69634624
3030	chr14	-	4302	39	Antisense	novelGene_ENSMUSG00000021843.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	19	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCGGGGCGGGGCGGCT	NA	False	NA	NA	False	NA	NA	NA	47974000	47886773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_47886848_47901210_47901772_47904751_47904890_47907580_47907753_47910393_47910526_47912204_47912322_47914139_47914281_47920837_47920947_47922177_47922305_47923706_47923799_47927400_47927577_47928368_47928430_47929890_47929934_47930860_47930950_47931329_47931399_47932064_47932103_47932217_47932300_47932957_47933027_47938074_47938110_47938523_47938617_47939131_47939218_47941625_47941733_47941874_47941943_47943216_47943258_47943864_47943956_47944695_47944737_47946258_47946348_47948296_47948357_47949928_47949966_47952088_47952180_47957652_47957741_47961424_47961506_47962106_47962198_47962332_47962426_47963680_47963765_47967794_47967879_47970681_47970779_47971610_47971719_47973553
3032	chr16	-	3239	23	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	-6	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	417.388706896375	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACTTATCTAGCATTTA	NA	False	NA	NA	False	NA	NA	NA	91443829	91418287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418358_91418411_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
3033	chr5	+	1649	11	Antisense	novelGene_ENSMUSG00000029363.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCGCACTCGGAGTCCGC	7031	False	NA	NA	False	NA	NA	NA	117517277	117527076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117517970_117518829_117518887_117519900_117519979_117520400_117520526_117520839_117520926_117521459_117521620_117522595_117522669_117523451_117523533_117524786_117524924_117525933_117526002_117526984
3034	chr14	+	3659	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	116.686029539114	179	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32043968	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049062_32054161_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
3035	chr15	-	4208	13	NNC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	11	111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218.019048607124	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGCCTAGCACAATGAAG	NA	False	NA	NA	False	NA	NA	NA	38519483	38488370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490624_38491874_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497795_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
3036	chr1	+	3415	24	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	626.450724636005	8	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATCTATTTGGTTCA	NA	False	NA	NA	False	NA	NA	NA	185095254	185160550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185145398_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
3037	chr18	+	3402	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	356	5	7	-5	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	1421	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTTCTTATGGCTACA	NA	False	NA	NA	False	NA	NA	NA	13105335	13126002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
3038	chr10	+	4037	15	Antisense	novelGene_ENSMUSG00002076247.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	693	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGCCGCCCCCGGCCCCGC	1326	False	NA	NA	False	NA	NA	NA	60934419	60983449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_60936787_60937458_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941299_60942042_60942150_60943355_60943443_60947938_60948069_60949215_60949294_60949788_60949937_60953473_60953540_60959085_60959258_60982039_60982111_60983394
3041	chr2	+	3527	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	-1075	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	320.9755192388	1943	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGTGGTGTCAAATGAAG	1936	False	NA	NA	False	NA	NA	NA	5850063	5875631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
3042	chrX	+	3065	24	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	8	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	944.346332771659	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524667	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545670_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547670_20548697
3043	chr2	+	6035	11	FSM	ENSMUSG00000038533.16	ENSMUST00000045270.15	6069	11	22	12	-18	-12	multi-exon	TRUE	canonical	3	422	junction_9	50.3348785634772	183	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGACTCAAGCTGGACC	5339	False	NA	NA	False	NA	NA	NA	154278436	154381264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_154278557_154342319_154342464_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803
3045	chr10	-	3904	14	NNC	ENSMUSG00000020097.15	novel	4102	15	NA	NA	565	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	164.855468346631	2	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACTGTAATCATTGGATG	NA	False	NA	NA	False	NA	NA	NA	60982112	60934430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_60936788_60937459_60937581_60938346_60938494_60938963_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943437_60947936_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036
3046	chr3	-	3582	21	FSM	ENSMUSG00000002227.16	ENSMUST00000166979.8	3584	21	0	2	0	-2	multi-exon	FALSE	canonical	3	19	junction_20	290.136325716033	22	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAAGCCTCTTGCGTGTG	NA	False	NA	NA	False	NA	NA	NA	104725879	104702153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725438_104725672
3048	chr19	+	3586	24	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	1938	-112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1116.56178141661	1	84	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCACAGCCCTTTTGTCT	3323	False	NA	NA	False	NA	NA	NA	10585643	10607071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10585837_10588065_10588185_10589013_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592975_10596447_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599872_10600721_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
3049	chr3	-	3573	21	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	25	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_19	466.518284743481	2	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTATGCAAAAGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	104725592	104702160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710153_104711446_104711709_104711793_104712030_104712219_104712424_104714277_104714419_104725251
3050	chr6	-	7576	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	270	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1613.88849986608	54	76	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTTGCCAATAAAACAACT	8755	False	NA	NA	False	NA	NA	NA	145021640	144939589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955857_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993091_145021614
3051	chr9	-	4516	7	FSM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	29	682	29	-78	multi-exon	FALSE	canonical	3	263	junction_3	363.380272197353	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTTTATGTTAACTA	NA	False	NA	NA	False	NA	NA	NA	96993181	96957695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127_96982293_96992963
3052	chr5	-	3335	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCGGCGGTGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937836_135938017_135940506_135963176
3053	chr3	+	3655	27	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-564	26371	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGTTTCCCCGGGCTCGG	NA	False	NA	NA	False	NA	NA	NA	89907857	89955123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908299_89909124_89909176_89909585_89909784_89910551_89910623_89915565_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935682_89941368_89941485_89941961_89942010_89945674_89945763_89946110_89946324_89951006_89951118_89952160_89952238_89955075
3054	chr10	+	4967	28	FSM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	0	8	0	-8	multi-exon	FALSE	canonical	3	154	junction_10	22.7726281441689	412	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGGTACTCAGTCTGAGA	NA	False	NA	NA	False	NA	NA	NA	84458155	84563034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
3055	chr11	-	5506	14	FSM	ENSMUSG00000020173.18	ENSMUST00000109651.9	5541	14	37	-2	34	0	multi-exon	FALSE	canonical	3	119	junction_9	120.525034842014	321	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	NA	False	NA	NA	NA	12414923	12186675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
3056	chr4	-	3218	13	NIC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	0	-9	intron_retention	FALSE	canonical	3	774	junction_10	189.721652837929	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCAACAGCTGAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484690	116458814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
3061	chr2	-	5021	19	NNC	ENSMUSG00000034101.15	novel	6170	19	NA	NA	2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.2040652404741	6	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTGTGTGTGTGGGAGG	NA	False	NA	NA	False	NA	NA	NA	84481087	84431135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84432294_84432623_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
3063	chr17	-	3405	15	NIC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	16	junction_13	268.032171386121	1199	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACTGTGGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	29226925	29189858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29217765_29217869_29218982_29219116_29226684
3064	chr18	+	3670	15	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	327.044214697871	1	86	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35695290	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715125_35715846_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
3065	chr18	+	3390	11	NIC	ENSMUSG00000024423.7	novel	687	8	NA	NA	-24	-5	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	238.212195321734	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTTCTTATGGCTACA	NA	False	NA	NA	False	NA	NA	NA	13107510	13126002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_13107593_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
3066	chr15	-	3289	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-113	490	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1556.05845541441	2	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCTAATTGTCCCAAAT	645	False	NA	NA	False	NA	NA	NA	36793876	36770523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772274_36772325_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
3067	chr4	+	2581	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43244	2550	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	122.33208446229	1	50	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAACTCCAATAAAGCTGAA	NA	False	NA	NA	False	NA	NA	NA	147533629	147600493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597165_147597836_147599561_147600430
3069	chr15	+	2821	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	97	0	-78	0	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	92	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756606	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
3070	chr11	+	3702	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-9	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	555.308009666707	1	94	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332193	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341503_72342029
3071	chrX	+	3512	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	69	482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	712.312556115642	1	101	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGATAATTACCCAGAT	NA	False	NA	NA	False	NA	NA	NA	20529205	20548926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539052_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
3072	chr14	-	2845	10	NIC	ENSMUSG00000060373.16	novel	2617	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_8	1463.29137710881	81	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGAAGCTGGTGTGT	8749	False	NA	NA	False	NA	NA	NA	52341461	52311001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52335772_52336002_52341345
3073	chr2	+	3392	7	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-3	1	intron_retention	FALSE	canonical	3	1993	junction_1	238.146138606809	3	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116346	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118779_130118951_130119891_130120075
3075	chr17	+	3591	4	NNC	ENSMUSG00000036036.16	novel	2597	3	NA	NA	0	-25	intron_retention	FALSE	canonical	0	0	junction_1	1458.01973771124	4	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAAGGGGAGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	37313445	37321499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37314268_37314360_37315796_37316941_37317087_37320310
3076	chr8	+	2714	18	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_15	552.780877890994	4184	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	NA	False	NA	NA	NA	75836196	75854325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75851699_75851775_75852864_75852993_75853850
3078	chr4	-	3034	16	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	-38	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	338.386655896607	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCCTTGTTCTGGAAT	NA	False	NA	NA	False	NA	NA	NA	116484732	116458249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458417_116458512_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
3079	chr11	+	3730	11	NNC	ENSMUSG00000017421.19	novel	2245	11	NA	NA	0	-106	intron_retention	FALSE	canonical	3	28	junction_2	290.76595399049	46	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATGCCTTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	80274156	80286965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80277005_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
3080	chr11	-	4465	6	NNC	ENSMUSG00000038615.18	novel	4654	5	NA	NA	93	0	intron_retention	FALSE	non_canonical	0	0	junction_1	504.843975897504	3	79	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96720688	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96710828_96710893_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
3082	chr2	-	2368	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	56	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCATTGCTTTTGTGTGT	3736	False	NA	NA	False	NA	NA	NA	154734751	154713330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
3085	chr11	-	3995	23	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-30	978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	239.281487301649	99	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97078737	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053061_97053171_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
3086	chr7	-	2766	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	19	-457	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	606.100839382359	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATAGTTGCTTGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	126165564	126146083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157873_126158127_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
3087	chr17	-	3152	15	NIC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-9	6	intron_retention	FALSE	canonical	0	0	junction_8	171.491238545761	72	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTGCTAGTCAACCATT	NA	False	NA	NA	False	NA	NA	NA	79244479	79227267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
3089	chr18	-	2828	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	1336.00873759821	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAACACTTTGCTGACT	NA	False	NA	NA	False	NA	NA	NA	64649498	64632726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649169
3090	chr2	+	3302	29	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	39	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	344.970258996101	3	25	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAAATGTTGGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	146854954	146919913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866744_146867114_146867227_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870167_146871277_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
3091	chr2	+	3675	21	NNC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	295.75893477628	2	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTCAGACTCCTTTGAT	7220	False	NA	NA	False	NA	NA	NA	29779823	29821755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804488_29804785_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
3092	chr10	+	2862	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-2	3	intron_retention	FALSE	non_canonical	0	0	junction_14	446.012812115783	948	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1587	False	NA	NA	False	NA	NA	NA	79690464	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699406_79699452
3093	chr7	+	3308	18	NIC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	212.389486834088	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCTTGATCTGATTGC	7239	False	NA	NA	False	NA	NA	NA	109617521	109655324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_109617716_109626277_109626356_109642035_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
3095	chr16	+	4610	9	NIC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-6	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	207.686926345882	9	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAAAGTTTTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	84631806	84660659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653921_84654063_84654267_84654461_84657262
3096	chr12	+	3824	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	245.866946854504	1	109	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTTCATGCGTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561173_86561256_86561325_86565594
3098	chr14	+	4549	32	ISM	ENSMUSG00000000365.10	ENSMUST00000095793.3	5264	37	111	12494	-5	-12494	5prime_fragment	FALSE	canonical	3	48	junction_25	186.279510927711	7	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCTGACTCCATGTA	NA	False	NA	NA	False	NA	NA	NA	56640148	56749995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56730574_56730862_56737884_56738049_56741374_56741495_56743383_56743465_56745274_56745401_56746735_56746793_56749667
3100	chr2	-	4260	20	NIC	ENSMUSG00000039671.19	novel	4130	24	NA	NA	-7	1	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	168.553681331215	130	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	165726575	165626073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726527
3101	chr12	+	3148	27	FSM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	-107	-1	8	0	multi-exon	FALSE	canonical	3	9	junction_1	281.366814005612	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7919	False	NA	NA	False	NA	NA	NA	76302079	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_76302319_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
3103	chr8	-	3939	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21274	4	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	24	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	81585851	81491062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
3104	chr4	-	4948	23	Intergenic	novelGene_1848	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	125	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTTGAATTTCGGCGC	NA	False	NA	NA	False	NA	NA	NA	52488256	52439257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_52439409_52440198_52440258_52447712_52447750_52449318_52449431_52449609_52449654_52450817_52451052_52451225_52451373_52457254_52457494_52458412_52458573_52459018_52459139_52460157_52460295_52461047_52461170_52462802_52463006_52465930_52466069_52467789_52467914_52469770_52469964_52470763_52470908_52474918_52475114_52476641_52476844_52478394_52478511_52481667_52481829_52484037_52484188_52486496
3107	chr16	-	3836	21	NNC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	336.998160232367	172	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCCAGTAAGTGAATTC	NA	False	NA	NA	False	NA	NA	NA	16176797	16130108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16130670_16130854_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
3110	chrUn_JH584304v1	-	3342	5	Intergenic	novelGene_4678	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_3	110.042037422069	8	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAATTAAAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	59731	52696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_55702_56985_57152_58563_58836_59591
3111	SIRV1	+	1325	6	Antisense	novelGene_SIRV1A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTATTTGGTAGAGGCG	NA	False	NA	NA	False	NA	NA	NA	1000	10550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV1_+_1485_6337_6472_6558_6813_7551_7813_10280_10365_10442
3112	chr16	-	4530	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	12	-335	-5	-265	multi-exon	FALSE	canonical	3	110	junction_1	627.165050046636	4499	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAATAAAAATGAAGACCAT	NA	False	NA	NA	False	NA	NA	NA	15412376	15370205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
3113	chr19	+	3922	9	NIC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	161	-300	intron_retention	FALSE	canonical	3	5201	junction_1	1335.85122089812	94	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTCCTGTCCTGCC	1004	False	NA	NA	False	NA	NA	NA	8944565	8955543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
3115	chr13	-	2274	13	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	699.917673730275	4	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498331	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476512_74479450_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485590_74491579_74491618_74492969_74493057_74498264
3116	chr6	-	3932	6	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	2	intron_retention	FALSE	canonical	3	761	junction_3	40.5590926920216	337	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTATTACTTGTCC	NA	False	NA	NA	False	NA	NA	NA	72416541	72409779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72414101_72414353_72414432_72416328
3117	chr7	-	4426	5	NIC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	12	-9	intron_retention	FALSE	canonical	3	125	junction_4	83.5508827003043	5	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGCTTACGTTTACTTAC	NA	False	NA	NA	False	NA	NA	NA	42155137	42122818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42139701_42155033
3119	chr2	+	4176	21	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACCCGGGCCTCTTCCC	1066	False	NA	NA	False	NA	NA	NA	4995537	5017516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4995748_4995789_4996287_4996904_4996949_4997688_4997835_4998553_4998663_4999375_4999496_5000533_5000673_5001910_5002144_5003344_5003453_5003539_5003646_5004484_5004594_5005672_5005868_5006074_5006194_5008820_5008985_5009751_5009922_5011153_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5016705
3120	chr7	-	4085	7	FSM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	-16	0	-2	0	multi-exon	FALSE	canonical	3	140	junction_4	65.4285021140549	289	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	42155166	42122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42155033
3121	chr15	-	1164	2	FSM	ENSMUSG00000041815.15	ENSMUST00000150926.2	837	2	9	-336	2	336	multi-exon	FALSE	canonical	3	666	junction_1	0	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAATAACCACCAGGCTAA	NA	False	NA	NA	False	NA	NA	NA	83033528	83021692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83022724_83033395
3122	chr3	+	2495	16	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	0	365	intron_retention	FALSE	canonical	3	92	junction_1	131.175099263033	1	37	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAGCCAAATGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	54600278	54622139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600524_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54620624_54621153_54621187_54622108
3123	chr3	+	2963	8	NIC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	2481	-3	intron_retention	FALSE	canonical	3	84	junction_1	164.105242488608	1	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGTCGTGGTGTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	54622139	54636180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_54623111_54624058_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
3124	chr5	-	3380	19	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	1	2	combination_of_known_junctions	FALSE	canonical	3	169	junction_18	290.373753405274	1183	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGGCTTTGTCTCCGA	NA	False	NA	NA	False	NA	NA	NA	149559840	149540307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434_149559625_149559784
3128	chr1	+	3458	21	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	579.951937663803	11	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATCTATTTGGTTCA	NA	False	NA	NA	False	NA	NA	NA	185095240	185160550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185160284
3129	chr18	+	3325	12	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	-8	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	237.785409195868	1	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCTTAACTTCTTATGG	NA	False	NA	NA	False	NA	NA	NA	13105320	13125997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549_13123583_13123669
3131	chr1	+	3947	32	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	210.453027031898	5	38	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCCTGCTTGCCGTT	3075	False	NA	NA	False	NA	NA	NA	171910406	171949889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939507_171940718_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
3132	chr18	-	3653	14	NIC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	-4	intron_retention	FALSE	canonical	3	2259	junction_13	774.177425652888	4	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACCAAAACACTTTG	NA	False	NA	NA	False	NA	NA	NA	64649570	64632732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
3133	chr18	+	641	1	Antisense	novelGene_ENSMUSG00000118134.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAGGAATGGTATTTAC	NA	False	NA	NA	False	NA	NA	NA	67908463	67909104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_67908500_67909100
3134	chr10	-	2689	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	49	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	874.805556249887	4	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAGTGCTTATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86541324	86526705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528075_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
3135	chr2	+	3079	16	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-59	-1	intron_retention	FALSE	canonical	3	1260	junction_6	144.857569893864	2323	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGATGTCCTTATGTCT	NA	False	NA	NA	False	NA	NA	NA	84867518	84877449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
3136	chr18	-	2927	16	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	8	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2167.01567035302	10	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGTACTGGCATAAACAA	207	False	NA	NA	False	NA	NA	NA	35087402	35070487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081235_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
3137	chr14	+	3107	23	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-7	-140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	119.308441160847	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCCATGTAGCAATTTG	NA	False	NA	NA	False	NA	NA	NA	32043968	32069637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047966_32054128_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
3138	chr18	-	4905	19	FSM	ENSMUSG00000041225.17	ENSMUST00000182559.8	4265	19	120	-760	-8	-30	multi-exon	FALSE	canonical	3	72	junction_11	38.5140666943045	312	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAACAAAACCAGTAATATT	-31	True	NA	NA	False	NA	NA	NA	6135978	6024456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
3139	chrX	+	3370	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	9	-483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	783.663301169577	2	88	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCAGATGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	20524668	20548935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539163_20541863_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
3141	chr2	-	4934	33	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.173992636338438	3	93	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTCGCGGGCAGATCC	NA	False	NA	NA	False	NA	NA	NA	180998406	180961565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964682_180965152_180965236_180965474_180965532_180970389_180970471_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981033_180982286_180982387_180988624_180988698_180988803_180988885_180990965_180991100_180991252_180991368_180991459_180991503_180991687_180991772_180991916_180991997_180992426_180992504_180992817_180992963_180993037_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180997345_180997441_180997604_180997688_180997872_180997948_180998050_180998148
3142	chr18	+	3079	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	504.066949715926	3	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTATTTTATTTTGGGTT	6432	False	NA	-90	True	NA	NA	NA	77126250	77241172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77152540_77152688_77184937_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240336
3144	chr7	+	3435	8	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-1	-253	intron_retention	FALSE	canonical	0	0	junction_2	310.757008557083	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGGATGGAGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	103867998	103884106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
3146	chr10	+	5209	12	NNC	ENSMUSG00000037608.17	novel	5307	12	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	310.961664879762	124	107	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTGGTCTCTGTTTGCCT	2867	False	NA	NA	False	NA	NA	NA	20188291	20218247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205076_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
3147	chr12	-	2302	3	ISM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	26412	10	8495	-6	3prime_fragment	FALSE	canonical	3	1922	junction_2	10.5	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCTGTCTGTCACTGTC	3157	False	NA	NA	False	NA	NA	NA	108832712	108825965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_108827353_108828728_108828870_108831938
3148	chr6	-	2655	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2858.84094695735	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705050_122706112_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
3149	chr14	+	4277	40	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	175.748048995823	12	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTCTGATTGTCGTTGA	NA	False	NA	NA	False	NA	NA	NA	47886791	47974021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
3150	chr9	+	4070	6	NNC	ENSMUSG00000057982.9	novel	1766	5	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	62.806369103778	56	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAAGTTGCCTTGGTTGTGT	734	False	NA	NA	False	NA	NA	NA	22137003	22154646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837_22152561_22153928
3151	chr11	+	4175	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	-788	2	-781	-2	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	613	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788115	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
3152	chr14	+	4616	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	99.1548662446781	1007	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTGCATGTGACCTGC	9633	False	NA	NA	False	NA	NA	NA	47535728	47560665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47557354_47557389
3153	chr4	-	2805	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-47	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	98.8271217834457	2	63	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	9476	False	NA	NA	False	NA	NA	NA	147894292	147838432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845736_147868857_147868945_147891535_147891641_147894124
3155	chr6	+	728	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-7	1426	-2	-189	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	14	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCGGAAGGCAAGATTACAG	3727	False	NA	NA	False	NA	NA	NA	117883748	117901154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
3156	chr1	+	4298	33	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.831637114052	1	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3021	False	NA	NA	False	NA	NA	NA	171910352	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910462_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939822_171940588_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
3158	chr5	-	3639	14	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23745	45624	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	109	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCAATGACTATTACAAGA	NA	False	NA	NA	False	NA	NA	NA	108256651	108208607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208724_108228688_108228817_108235082_108235255_108235799_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108247519_108247598_108248678_108248857_108251891_108251990_108252130_108252184_108252290_108252395_108254452
3160	chr6	+	4255	25	NIC	ENSMUSG00000030016.15	novel	4366	26	NA	NA	-3	-6	combination_of_known_junctions	FALSE	canonical	3	40	junction_22	82.4636283460775	198	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCAACACTGTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	83891368	83963845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83960957_83961057_83961758_83961878_83963539
3162	chr1	+	7162	36	NIC	ENSMUSG00000064302.14	novel	7207	37	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_24	43.3379317288056	181	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCCGACCTTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	118317187	118537182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_118317252_118347169_118347649_118387530_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211_118433272_118434669_118434748_118436544_118436713_118437301_118437352_118437935_118438107_118449556_118449665_118453026_118453186_118466995_118467100_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
3163	chr16	-	3930	15	NIC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	1	intron_retention	FALSE	canonical	3	744	junction_6	124.433922305809	5	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAACTGTATCATTGTAC	8110	False	NA	NA	False	NA	NA	NA	4867727	4831771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
3164	chr14	+	3854	9	Antisense	novelGene_ENSMUSG00000077797.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGGTTCAACGTCACGCGC	1516	False	NA	NA	False	NA	NA	NA	30734395	30740976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30734590_30734677_30734749_30735125_30736984_30737231_30737340_30738281_30738348_30738767_30738864_30739012_30739127_30739234_30739372_30739766
3165	chr16	-	4071	15	NIC	ENSMUSG00000052459.14	novel	4234	15	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	3	junction_14	122.59015840913	867	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTTCCCTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	43960054	43905764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959873
3166	chr7	-	2768	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	7	-457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	605.9638520572	2	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATAGTTGCTTGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	126165576	126146083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147076_126151278_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
3167	chr7	+	3613	4	FSM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	0	-3	0	0	multi-exon	FALSE	canonical	3	709	junction_3	48.6095555306659	426	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732
3169	chr1	+	4063	22	NNC	ENSMUSG00000026288.15	novel	4880	27	NA	NA	16	0	intron_retention	FALSE	canonical	3	35	junction_6	108.523485655297	21	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCTCCTGACTGTGTG	9386	False	NA	NA	False	NA	NA	NA	87603976	87648225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625117_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
3170	chr14	+	4606	22	NIC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	-3	0	intron_retention	FALSE	canonical	3	291	junction_9	30.2922275116745	287	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCTCATTACTCGCGAC	NA	False	NA	NA	False	NA	NA	NA	20724400	20744920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
3171	chr11	+	5340	9	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	109	-4	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	185.978787432868	2	64	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCGACATTGTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	88890310	88911115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907157
3174	chr11	-	5240	25	FSM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	2	-89	2	89	multi-exon	FALSE	canonical	2	205	junction_2	31.5695880379977	266	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGAGTTGATTAGTAGT	NA	False	NA	NA	False	NA	NA	NA	53598144	53540256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
3176	chr15	-	2938	12	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-126	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	737.112559667677	6	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283921	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250622_81253611_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
3177	chr8	-	4157	23	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	-8	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	115.539169058709	600	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCATGTGTCGTGCCCC	8133	False	NA	NA	False	NA	NA	NA	120285482	120234889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265649_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
3178	chr9	-	3451	5	ISM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	55	6	-9	-6	intron_retention	FALSE	canonical	3	3873	junction_3	415.110828574731	68	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATGTGAGTAGTGCCT	NA	False	NA	NA	False	NA	NA	NA	110775171	110768676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258
3179	chr5	+	3599	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	23	3	-1	-3	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	963	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTTTCGGTATTGGCAT	NA	False	NA	NA	False	NA	NA	NA	77122552	77147781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
3180	chr12	+	3100	28	NNC	ENSMUSG00000021048.8	novel	738	5	NA	NA	10053	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	277.819616602209	1	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTTGGTGTTGAAACATA	5156	False	NA	NA	False	NA	NA	NA	76312306	76366575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76312415_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
3182	chr4	-	3153	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	658.333333003692	57	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	1	True	NA	NA	False	NA	NA	NA	43000434	42979962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990784_42993144_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
3183	chr4	+	3737	7	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	578	4	NA	NA	0	63384	multi-exon	TRUE	non_canonical	0	0	junction_1	176.724597420204	1	219	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGGTTGACTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	146599376	146806001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146599498_146697966_146698060_146797298_146797381_146800390_146800518_146802050_146802612_146803029_146805509_146805727
3184	chrX	+	3258	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	222.789648547683	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799471	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811129_150816708_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
3185	chr10	-	2767	13	Fusion	ENSMUSG00000091994.3_ENSMUSG00000035835.15	novel	3063	9	NA	NA	2988	-3079	intron_retention	FALSE	non_canonical	0	0	junction_1	0	33	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATGGCGGAGACGCCC	NA	False	NA	NA	False	NA	NA	NA	79700127	79690464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_79690563_79694561_79694656_79694782_79695105_79695183_79695354_79695432_79695544_79695612_79695789_79695949_79696025_79696653_79696802_79697845_79697881_79698281_79698375_79698485_79698704_79698811_79698890_79698978
3186	chr4	+	2146	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1902	multi-exon	FALSE	non_canonical	0	0	junction_1	43.0816050230029	4	38	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146206906	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146209452_146209546_146291416_146291510_146312913_146312976_146388486_146388614_146390758_146390897_146391646_146392511_146393179_146393429_146552609
3188	chr5	+	5371	43	FSM	ENSMUSG00000037426.19	ENSMUST00000119705.8	7929	43	-3	2561	-3	9	multi-exon	FALSE	canonical	3	86	junction_1	24.5195673630974	263	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTCCCTCTCTCCC	2023	False	NA	NA	False	NA	NA	NA	33021074	33149014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_33021166_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
3189	chr7	-	2824	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	26	-459	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	606.531606760934	4	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATAGTTGCTTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	126165557	126146085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163661_126163778_126163874_126163941_126165250_126165392_126165519
3190	chr16	-	4302	15	ISM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	10	-1	10	1	intron_retention	FALSE	canonical	3	744	junction_6	123.77780042298	1068	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAACTGTATCATTGTAC	8126	False	NA	NA	False	NA	NA	NA	4867711	4831771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613
3191	chr8	+	3120	13	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	448.10089234705	3	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8844	False	NA	NA	False	NA	NA	NA	120637569	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120674487_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
3194	chr6	-	3587	19	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-8	5	intron_retention	FALSE	canonical	3	759	junction_15	54.032140640754	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACGGGGGCTGACTGGTT	7924	False	NA	NA	False	NA	NA	NA	124806379	124791995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
3195	chr1	+	5706	29	FSM	ENSMUSG00000048000.16	ENSMUST00000027475.15	5724	29	18	0	-8	0	multi-exon	FALSE	canonical	3	77	junction_9	29.4000164861817	377	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGGTCTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	87254742	87378518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
3196	chr8	-	5473	12	FSM	ENSMUSG00000004319.16	ENSMUST00000093490.9	5518	12	45	0	-11	0	multi-exon	FALSE	canonical	3	96	junction_11	42.8184713366008	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGCTTTTAATTGCA	NA	False	NA	NA	False	NA	NA	NA	61436289	61363422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
3198	chr19	-	5051	12	NNC	ENSMUSG00000025154.16	novel	5103	12	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	109.877843516642	1	95	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGTGGGTTCTGACTGG	4535	False	NA	NA	False	NA	NA	NA	41790478	41755028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41758594_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
3199	chr11	-	3184	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9034	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_2	479.98502195566	371	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	390	False	NA	NA	False	NA	NA	NA	106615254	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
3201	chr5	-	3376	6	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	-12	intron_retention	FALSE	canonical	3	151	junction_1	349.641759519655	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAATAAAATCTCAGTT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184055_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
3205	chr6	-	3240	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-579	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3648.84925010612	2	79	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	9668	False	NA	NA	False	NA	NA	NA	122720458	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122704850_122705232_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122720409
3206	chr15	-	3172	8	FSM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	-13	-2	-8	0	multi-exon	FALSE	canonical	3	86	junction_6	194.457277192347	29	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033545	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
3207	chr13	+	4016	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-1	2086	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	114.499606986225	2	173	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACATGAAGGCAATTTTT	NA	False	NA	NA	False	NA	NA	NA	62277728	62323319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62320940_62321023_62321979_62322536
3209	chrX	-	3142	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3639	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	413.376474143123	3	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTGCTCTGTGCCATGC	NA	False	NA	NA	False	NA	NA	NA	23185057	23085525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086718_23086798_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
3210	chr17	-	3267	17	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-1	99	intron_retention	TRUE	non_canonical	0	0	junction_16	160.439228662288	360	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79244471	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303_79244328_79244366
3211	chr2	-	4761	32	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.176684695969408	7	35	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGCAGATCCGTGTAGCC	NA	False	NA	NA	False	NA	NA	NA	180997824	180961557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964687_180965154_180965236_180965474_180965536_180970393_180970472_180972585_180972666_180976696_180976770_180977684_180977835_180980022_180980144_180980844_180981033_180982286_180982387_180983315_180983371_180988621_180988698_180988803_180988885_180990965_180991101_180991255_180991368_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180997345_180997441_180997604_180997714
3212	chr12	+	3840	7	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	245.866946854504	2021	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516890	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517007_86517067_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
3214	chr11	-	3085	11	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	2035	1	-447	-1	3prime_fragment	FALSE	canonical	3	3830	junction_8	172.643447602277	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTCTTCATTTATTTATT	NA	False	NA	27	True	NA	NA	NA	106677323	106671181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273
3216	chr14	+	3168	8	NIC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	3	-86	intron_retention	FALSE	canonical	3	50	junction_4	552.35750771265	11	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGGAGATCTCACACCC	9018	False	NA	NA	False	NA	NA	NA	55777849	55787388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496
3218	chr17	-	3881	14	NIC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	-19	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_13	162.628119725476	12	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGAAGACATTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	32539718	32522654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32539458
3219	chr4	+	3044	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43233	2318	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	125.640691391497	1	62	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAATTAAAATGAACCAAT	NA	False	NA	NA	False	NA	NA	NA	147533640	147600261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597082_147597752_147599202_147599366
3221	chr11	-	4188	13	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	7	0	intron_retention	FALSE	canonical	3	2240	junction_1	255.007298370502	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5898	False	NA	NA	False	NA	NA	NA	100510478	100473643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100489555_100490010_100490136_100492553_100492643_100510353
3223	chr4	-	4128	28	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	39	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	192.829483939939	713	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGGTCTCCGTGTTCTG	276	False	NA	NA	False	NA	NA	NA	41275077	41194314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41196410_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
3224	chrX	+	3308	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	222.789648547683	2	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799471	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150816712_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
3226	chr12	+	4281	20	NIC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	8	4	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	144.182728784617	544	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAGTGCATATACTAG	3994	False	NA	NA	False	NA	NA	NA	83679038	83729901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
3227	chr2	+	3649	22	NNC	ENSMUSG00000070544.7	novel	3856	21	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	99.1163909599018	668	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCGTCTGCCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	160487897	160564684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556028_160556144_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
3228	chr1	+	3359	11	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	36	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	703.357121240697	3	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTAATATAGATAT	927	False	NA	NA	False	NA	NA	NA	58432326	58446489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437012_58438169_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442100_58443375_58443514_58444193
3229	chr15	+	3106	17	NIC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-19	intron_retention	FALSE	canonical	3	1727	junction_10	134.143987472417	134	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATCCATATCTATTAAT	NA	False	NA	NA	False	NA	NA	NA	81756684	81799315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81798014_81798438_81798561_81798828
3231	chr17	+	5027	11	NIC	ENSMUSG00000024188.17	novel	4934	10	NA	NA	-27	-5	combination_of_known_junctions	FALSE	canonical	3	95	junction_2	204.37027670383	500	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCTCTTGTCAGGTGT	NA	False	NA	NA	False	NA	NA	NA	26471897	26504473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
3234	chrX	+	3646	13	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	325.012649326487	1	94	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACTATGACTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	95139697	95212153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203768_95207023_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
3235	chr5	-	4458	28	FSM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	-16	11	0	-5	multi-exon	FALSE	canonical	3	318	junction_10	27.4864725426801	9	20	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGGTGCAGTCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	108777621	108717290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
3237	chr11	-	2308	2	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGAAAAAAAAAGAATAGAT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443
3238	chr6	-	3362	8	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	-28	-2	intron_retention	FALSE	canonical	1	17	junction_6	283.804258500215	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAACTGTGTCTATTACT	NA	False	NA	NA	False	NA	NA	NA	72416569	72409784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414049_72414353_72414432_72416328
3240	chr9	+	3885	21	NNC	ENSMUSG00000032115.15	novel	3374	26	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	231.807980880728	4	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTATGTGTTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	44290891	44303659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291235_44291809_44291908_44292112_44292160_44295526_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
3241	chr1	-	2215	2	NIC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-45	-10284	intron_retention	FALSE	canonical	3	189	junction_1	0	1	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAAAGGGCTGGGCTCA	NA	False	NA	NA	False	NA	NA	NA	13197432	13193964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_13196081_13197333
3242	chr1	-	3756	4	NNC	ENSMUSG00000026112.8	novel	3863	3	NA	NA	-48	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	200.430093105357	964	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTTGTTCTGTTTCAAG	6327	False	NA	NA	False	NA	NA	NA	37469129	37456168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_37458944_37458991_37459709_37467422_37467507_37468949
3244	chr14	+	4484	42	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	34	-3	combination_of_known_junctions	FALSE	canonical	3	70	junction_41	208.399307261572	166	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAACATGACTCACTCTGA	NA	False	NA	NA	False	NA	NA	NA	47886806	47974011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47971611_47971728_47973556
3245	chr18	+	5007	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	17	6	12	-3	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	1007	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAAGGTGTGCAATGATT	NA	False	NA	NA	False	NA	NA	NA	57487829	57526022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
3246	chr17	-	1488	5	Antisense	novelGene_ENSMUSG00000046711.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGACCCAGGGGCAGGGG	NA	False	NA	NA	False	NA	NA	NA	27782504	27775595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_27775686_27778506_27778675_27779898_27779985_27780433_27780483_27781409
3247	chr1	-	2771	13	NIC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-19	-4	intron_retention	FALSE	canonical	3	5685	junction_12	894.786050622655	46	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTGCCAGACTTAATAC	NA	False	NA	NA	False	NA	NA	NA	86287141	86278221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_86278419_86278533_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
3248	chr18	+	3482	12	NIC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	23	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	317.20121621811	5	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTTCTTATGGCTACA	NA	False	NA	NA	False	NA	NA	NA	13105351	13126002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13110628_13110725_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
3249	chr2	+	3449	22	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	293.254233305291	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7220	False	NA	NA	False	NA	NA	NA	29779823	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481_29821176_29821479
3250	chr1	-	3727	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	5665	0	456	multi-exon	FALSE	canonical	3	480	junction_18	71.7805568876937	709	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATACACCTTTCTGATAG	NA	False	NA	NA	False	NA	NA	NA	180971769	180920367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
3251	chr17	+	4946	10	FSM	ENSMUSG00000024188.17	ENSMUST00000114976.9	4934	10	-17	5	-17	-5	multi-exon	FALSE	canonical	3	213	junction_9	132.110877487879	441	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCTCTTGTCAGGTGT	NA	False	NA	NA	False	NA	NA	NA	26471907	26504473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
3252	chr6	-	3171	16	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	918.038972786861	817	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	NA	False	NA	NA	NA	88875676	88860455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864828_88865142_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
3253	chr10	-	3968	14	NNC	ENSMUSG00000020097.15	novel	4070	15	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	138.111137822163	357	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATCATTGGATGGTTGA	NA	False	NA	NA	False	NA	NA	NA	60983420	60934425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60959083_60959254_60982036_60982111_60983363
3254	chr1	-	2511	13	NIC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-8	-1	intron_retention	FALSE	canonical	3	5685	junction_12	952.613014584388	6150	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCAGACTTAATACTTC	NA	False	NA	NA	False	NA	NA	NA	86287094	86278218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
3255	chr14	-	3647	24	Antisense	novelGene_ENSMUSG00000030662.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	82	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCTGGGTAGACTTCAT	NA	False	NA	NA	False	NA	NA	NA	121184810	121157406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_121157525_121159534_121159640_121160450_121160548_121160891_121160996_121163610_121163734_121163822_121163935_121165856_121165955_121166709_121166820_121170253_121170381_121170462_121170567_121170659_121170814_121172438_121172660_121173833_121173911_121175969_121176110_121176184_121176308_121176869_121176969_121178233_121178405_121179041_121179154_121179239_121179296_121180058_121180184_121181091_121181311_121181743_121181972_121183486_121183629_121184128
3257	chrX	+	3760	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	312.456235988793	48	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139647	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209622_95209704_95209756_95210075
3259	chr18	-	4404	21	NIC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	-20	1	intron_retention	FALSE	canonical	3	307	junction_20	95.4622438454073	87	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCTGGCCTTTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	34757627	34732881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
3261	chr10	-	4656	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	-3	13	-3	-13	multi-exon	FALSE	canonical	3	255	junction_15	80.7788802843912	732	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGACGGCCTTATTTAGT	NA	False	NA	NA	False	NA	NA	NA	123032861	122947653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
3262	chr2	-	7421	19	NIC	ENSMUSG00000017670.17	novel	4695	21	NA	NA	-1	-16	intron_retention	TRUE	canonical	3	281	junction_4	29.1810546522446	84	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTTGTCATGTCATTTC	NA	False	NA	NA	False	NA	NA	NA	165158272	165129966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158
3263	chr19	+	3843	24	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	415.038777881727	852	58	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1873	False	NA	NA	False	NA	NA	NA	8875444	8894036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884586_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889101_8889766_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
3264	chr8	+	461	1	Genic_Genomic	ENSMUSG00000004567.17	novel	NA	NA	NA	NA	1761	12	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTAACAGGTGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	3564783	3565244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_3564800_3565200
3265	chr2	+	3112	8	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	1993	junction_1	222.057723696027	85	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119891_130120075
3266	chr15	-	5179	7	NNC	ENSMUSG00000041935.11	novel	5076	6	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	107.135039397326	413	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTGTTTCTTACTTTCT	2186	False	NA	NA	False	NA	NA	NA	4025220	4011519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021437_4021550_4021839_4021947_4025096
3269	chr15	+	5824	23	NIC	ENSMUSG00000022272.18	novel	5880	21	NA	NA	227	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	149.870088371328	428	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGCTTTCCTTGAGT	56	False	NA	NA	False	NA	NA	NA	25753291	25813757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
3270	chr15	+	4985	24	NNC	ENSMUSG00000015002.19	novel	5215	23	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	118.79218880458	1	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATAAGTGCATTTTTATT	NA	False	NA	NA	False	NA	NA	NA	65658908	65745661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001_65744036_65744241
3271	chr17	+	3226	6	NIC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	-156	intron_retention	FALSE	canonical	3	61	junction_3	772.893938389997	35	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTGGCTTAAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29251761_29255214_29255423_29257463_29258884_29259748_29259788_29260180_29260268_29260357
3273	chrX	+	3496	22	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	47	-729	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	221.98789572934	2	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799470	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
3275	chr14	+	3255	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	-4	472	-4	-141	multi-exon	FALSE	canonical	3	463	junction_11	40.4855688541514	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACATCCATGTAGCAATTT	NA	False	NA	NA	False	NA	NA	NA	32043971	32069636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
3276	chr5	+	3979	22	NNC	ENSMUSG00000036817.15	novel	3955	22	NA	NA	13	-2	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	263.523921386384	26	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTGCGATTTCAAGTG	NA	False	NA	NA	False	NA	NA	NA	139186452	139235548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186519_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
3277	chr12	+	3768	5	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	25	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	289.469342072697	18	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGCTGAGTCGTTCAT	NA	False	NA	NA	False	NA	NA	NA	86516915	86568391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517337_86552581_86552700_86553122_86553285_86561054_86561325_86565594
3278	chr11	-	2222	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48644022_48644119
3279	chr10	-	2681	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	878.867925487002	517	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	86541326	86526703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86529975_86530261_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
3280	chrX	-	2944	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	6	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256256	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233635_93234275_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
3281	chr11	-	3264	28	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	371.774158181224	243	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTTGGTTTGCTGC	8484	False	NA	NA	False	NA	NA	NA	102771775	102729302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102729723_102729975_102730055_102730254_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
3282	chr6	-	1308	2	NNC	ENSMUSG00000030357.11	novel	2678	9	NA	NA	7898	125387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAACAACAAAAAACCTGAG	6989	False	NA	NA	False	NA	NA	NA	128406718	128281310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128281325_128405424
3283	chr15	-	3233	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.638995176448	1315	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033560	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83012157_83012197_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
3284	chr10	+	3193	14	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	-18	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	627.329702957717	15	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTGGTGATATTTGAAG	NA	False	NA	NA	False	NA	NA	NA	111309123	111334009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111326260_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
3286	chr18	+	3352	15	NIC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	22	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	478.992911412761	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35285673	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
3287	chr11	+	4640	12	NNC	ENSMUSG00000007850.17	novel	4002	12	NA	NA	1	-3	intron_retention	FALSE	canonical	2	11	junction_1	139.852519722482	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACACTCTGTCTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	50268592	50277351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268630_50269085_50269255_50270294_50270451_50270647_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
3289	chr12	+	5728	15	FSM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	5	-1	5	1	multi-exon	FALSE	canonical	3	176	junction_8	15.7246718923623	281	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATGTTTCTTGTGCTTA	NA	False	NA	NA	False	NA	NA	NA	101942251	101972684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967236_101968886_101969022_101969387
3290	chr7	-	4344	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-14	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	110.728898165244	287	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTTACTTACTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	42155178	42122811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123497_42123694_42126108_42126528_42126639_42137893_42137975_42138858_42139701_42150781_42150850_42155033
3291	chr14	-	2664	8	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-12	-1	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1223.61628639314	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTAGAAGCTGGTGTG	8713	False	NA	NA	False	NA	NA	NA	52341497	52311002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
3292	chr13	-	1833	17	FSM	ENSMUSG00000039233.13	ENSMUST00000039894.13	1844	17	4	7	4	-6	multi-exon	FALSE	canonical	3	97	junction_4	17.0705109399221	469	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACTATTGATTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	14214219	14172543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
3293	chr6	+	2603	3	ISM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	26	8	26	-8	intron_retention	FALSE	canonical	3	4542	junction_1	9.5	1248	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTTAGTGGTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	122684552	122691584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122684893_122688496_122688763_122689587
3294	chr19	-	3139	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	512.350612373987	2961	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTACTGGCTAACTACT	3912	False	NA	NA	False	NA	NA	NA	5345437	5323963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337970_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
3295	chr1	+	3191	26	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	4	142	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	317.057814286291	1582	42	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTTAGTTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	85992366	86067015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046271_86046307_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
3296	chr6	-	3822	20	NNC	ENSMUSG00000015112.16	novel	3121	18	NA	NA	-14	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	251.91693878007	6	55	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGATTGCTTGCTCTT	6	True	NA	NA	False	NA	NA	NA	6217132	6041221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6136227_6136725_6136834_6137086_6152407_6152524_6180970_6181114_6191263_6191318_6216995
3297	chr11	+	3287	12	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	18	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	460.989664823822	165	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACGAATCAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	109541764	109560481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255_109559899_109559951
3298	chr9	+	3923	11	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	11	intron_retention	FALSE	canonical	3	69	junction_1	184.307596153821	76	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATATATACAGTAAAAAGAA	9118	False	NA	NA	False	NA	NA	NA	15217555	15228254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225329_15225526_15225561_15226397_15226428_15226678
3299	chr16	+	3365	8	NIC	ENSMUSG00000022800.15	novel	4312	9	NA	NA	0	-840	combination_of_known_junctions	FALSE	canonical	2	7	junction_6	210.012050188768	95	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTCTGAGCTATAAAGA	NA	False	NA	NA	False	NA	NA	NA	32698182	32728405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32722788_32722916_32725901
3301	chr2	+	4287	19	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-4	-1542	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	186.498808456128	14	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTGTATAATTACATTGA	7218	False	NA	NA	False	NA	NA	NA	23046525	23087730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23086599_23086810
3302	chr9	+	7096	13	NIC	ENSMUSG00000032384.17	novel	7208	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_11	8.55375161357089	73	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGTTTCATTAGCTG	NA	False	NA	NA	False	NA	NA	NA	65816268	65952297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65816451_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65939520_65939628_65946858
3304	chr7	-	3632	28	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	-24	-2	intron_retention	FALSE	non_canonical	0	0	junction_24	159.193569570484	1719	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGTGTGTGTACGAAG	NA	False	NA	NA	False	NA	NA	NA	28038195	28014324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
3305	chr9	+	2571	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	52	159	-18	-159	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	26	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTAGGTACCCGTCTG	NA	False	NA	NA	False	NA	NA	NA	77824697	77891642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
3307	chr4	+	5656	16	Antisense	novelGene_ENSMUSG00000028228.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	207	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCGGAGTCCCGGAGCG	NA	False	NA	NA	False	NA	NA	NA	19519256	19570119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_19523294_19525001_19525240_19526283_19526417_19528058_19528114_19528189_19528243_19532398_19532531_19533052_19533115_19535211_19535301_19536528_19536623_19540737_19540833_19543255_19543337_19550586_19550660_19552243_19552319_19553717_19553896_19555359_19555502_19570000
3308	chr13	+	3790	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	51	745	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_3	84.7833841163599	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCACTGTGTTGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	97619259	97634260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629996_97630912
3309	chr5	-	2981	16	ISM	ENSMUSG00000106864.4	ENSMUST00000202639.4	4200	21	7070	194	1454	-194	3prime_fragment	FALSE	canonical	3	503	junction_15	48.336045900894	2	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAAAATAGTCACCCCCC	NA	False	NA	NA	False	NA	NA	NA	31330391	31314058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125
3310	chr1	+	2972	18	NNC	ENSMUSG00000104217.2	novel	825	10	NA	NA	-49	11135	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	673.59887132207	1	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	4878065	4968128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4937692_4937756_4948249_4948356_4956966_4957055_4959682_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578_4967857_4967975
3311	chr19	-	3133	22	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-14	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	500.962176257666	192	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGAGTACTGGCTAACT	3899	False	NA	NA	False	NA	NA	NA	5345450	5323966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336896_5336944_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
3312	chr15	-	2737	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	11	345	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	753.850349051741	2116	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	NA	False	NA	NA	False	NA	NA	NA	11399740	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384348_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
3313	chr8	+	3461	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	270.187812607513	8	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5813	False	NA	NA	False	NA	NA	NA	107330746	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392834_107395857
3314	chr7	-	3448	5	NNC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-25	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	174.005747031528	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGAAGAACCTGGCGTGT	NA	False	NA	NA	False	NA	NA	NA	42342191	42309538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42312421_42314181_42314243_42314441_42314569_42319691_42319953_42342074
3315	chr14	+	4343	40	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	256	junction_23	152.349273439967	2	21	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886770	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
3317	chr4	-	3505	16	NIC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	-15	2	combination_of_known_splicesites	FALSE	canonical	2	14	junction_4	315.117727559435	12	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080477	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
3319	chr11	-	1183	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCAGAGGACTCCTGGGA	5980	False	NA	NA	False	NA	NA	NA	120655211	120654028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120654000_120655200
3320	chrX	-	5040	35	NNC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	-1	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_33	88.0919865645327	1	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTTCCTAAAGGAAAACC	4276	False	NA	NA	False	NA	NA	NA	92675762	92348392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649528_92670160_92670219_92675674
3322	chr15	-	1569	8	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-22	218	intron_retention	FALSE	canonical	3	2945	junction_3	300.82410617692	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGTTTCATGTGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	11399709	11391079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11391294_11391899_11391979_11392055_11392121_11392317_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
3324	chr13	+	3547	31	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	535.542413508647	12	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTGGAAGTAGTTATT	NA	False	NA	NA	False	NA	NA	NA	49835658	49887740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879723_49880602_49880780_49883490_49883541_49887440
3325	chr10	-	2628	17	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	907.651018340061	4	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	86541326	86526703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86541217
3327	chr19	-	4199	27	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24158	-6555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	155	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGACACGTTGCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	10607176	10582950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585830_10588051_10588177_10589003_10589104_10590234_10590397_10591473_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599084_10599188_10599343_10599423_10599531_10599650_10599860_10600700_10600797_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603353_10603948_10604125_10604487_10604597_10604849_10605021_10605123_10605234_10605788_10605906_10606439
3328	chr1	+	3511	1	FSM	ENSMUSG00000065160.3	ENSMUST00000083226.3	84	1	-2190	-1237	-2190	1237	mono-exon	FALSE	NA	NA	NA	NA	NA	854	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATTTTTTTTTAAGATT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160862700_160866200
3329	chr5	+	4210	25	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	51	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCCAGGGCCACCTCCAC	NA	False	NA	NA	False	NA	NA	NA	100509521	100564043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100510090_100511235_100511303_100511684_100511804_100513585_100513854_100516152_100516210_100521236_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533987_100534063_100538617_100538687_100540247_100540490_100540722_100540875_100541061_100541221_100543657_100543760_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555136_100555887_100555973_100563761
3330	chr3	+	3765	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-1	-16	intron_retention	FALSE	non_canonical	0	0	junction_7	279.992201057567	46	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAAGTTCTTTGCTTAAC	NA	False	NA	NA	False	NA	NA	NA	102965662	102975206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102973430_102974048
3331	chr16	+	3014	21	FSM	ENSMUSG00000006998.17	ENSMUST00000172207.8	3001	21	-23	10	-23	-8	multi-exon	FALSE	canonical	3	6	junction_1	681.526116520857	97	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCCCCAAGGTCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	20470430	20482154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20470602_20470901_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
3333	chrX	-	4006	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	808	-17	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	150.29326773522	30	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAGGTTCCACAAATTGA	NA	False	NA	NA	False	NA	NA	NA	59223641	59101335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59111797_59111992_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
3337	chrUn_JH584304v1	-	3327	3	Intergenic	novelGene_4649	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_2	323.5	23	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACCATAGCTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	59721	52670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_55702_56985_57152_59591
3338	chr17	-	4455	11	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCCGCGCGCGCGCGCCA	NA	False	NA	NA	False	NA	NA	NA	36170545	36152566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36152656_36155321_36155461_36156728_36157111_36157192_36157268_36158212_36159557_36159682_36159748_36159896_36159990_36161184_36161403_36162001_36162048_36163305_36164598_36169833
3339	chrX	-	4836	15	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	0	-62	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	33.7922826596094	1	144	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTTAATGGTGCTTGC	NA	False	NA	NA	False	NA	NA	NA	49724138	49652063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653690_49656416_49656571_49658153_49659169_49661891_49662019_49662096_49662395_49665962_49666295_49666747_49666902_49670279_49670434_49684337_49684406_49687010_49687166_49689620_49689776_49715313_49715387_49716083_49716187_49719767_49719873_49723821
3340	chr12	+	3415	5	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-1	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	277.422962279621	4	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGCTGAGTCGTTCAT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553251_86565772
3341	chr2	-	4525	16	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	0	-4	intron_retention	FALSE	canonical	3	1358	junction_5	377.007303200703	68	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCCACAAGAAAATTTTCG	NA	False	NA	NA	False	NA	NA	NA	156022096	155989172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156021161_156021806
3342	chr14	-	5804	24	NNC	ENSMUSG00000033487.15	novel	4100	24	NA	NA	-53	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_6	48.060138759872	159	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTTTTTTGTATTTAT	7092	False	NA	NA	False	NA	NA	NA	72840455	72775387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795004_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72840361
3343	chr17	+	2946	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	458.328974524728	22	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4872	False	NA	NA	False	NA	NA	NA	87979968	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026151_88026234_88026715_88026964_88028310_88028487_88030758
3346	chr16	+	2764	21	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	700.809132360588	2	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAAGGTCTCTGTCTATT	NA	False	NA	NA	False	NA	NA	NA	20470459	20482158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473756_20474098_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
3347	chr1	+	3117	24	NIC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	19	142	combination_of_known_splicesites	FALSE	canonical	1	5	junction_14	327.152866577141	1440	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTTAGTTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	85992381	86067015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
3348	chr8	-	3064	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	39	-8	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_3	1996.26267476669	7	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACTAGAAATGAGTTCA	NA	False	NA	NA	False	NA	NA	NA	43759934	43748111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43758980_43759877
3349	chr7	-	2691	20	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	19	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	619.426381058513	1	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165564	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157898_126161781_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
3350	chr18	-	2552	15	NNC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1475.16286890496	6	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGCTGACTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	64649586	64632719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636636_64637402_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
3351	chr8	+	3762	14	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	509.846107423052	21	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGTGCTGTGTGAATAC	NA	False	NA	NA	False	NA	NA	NA	75836196	75854320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836226_75836327_75836503_75836717_75836845_75840841_75840949_75842479_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
3352	chrX	-	4858	15	FSM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	2	8	2	-6	multi-exon	FALSE	canonical	3	145	junction_7	16.3001189428489	269	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGCTTTTCCACTGTAAT	NA	False	NA	NA	False	NA	NA	NA	112095212	111950297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
3353	chrX	-	3560	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	33	11	-7	-11	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	704	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAGGAAATTTG	NA	False	NA	NA	False	NA	NA	NA	37545298	37508394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
3354	chr16	-	3419	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	4	7	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_14	374.363788438131	970	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8120	False	NA	NA	False	NA	NA	NA	4867717	4831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866093_4866218_4866613_4866651_4867669
3355	chr3	+	4323	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	137	10	55	-2	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	2	111	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACTGTATTTTCCCTAC	NA	False	NA	NA	False	NA	NA	NA	102965737	102975220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
3356	chr11	+	1446	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	165	15	165	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	120653784	120655230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653800_120655200
3357	chr8	-	1549	2	ISM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	6234	0	6234	0	3prime_fragment	FALSE	canonical	3	4329	junction_1	0	40	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43753739	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43749574_43753664
3359	chr1	+	4207	33	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	255.849471659485	1	81	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGCTTGCCGTTTCCC	3061	False	NA	NA	False	NA	NA	NA	171910392	171949893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933706_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940657_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
3360	chr2	+	2475	10	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	240.730575283954	6	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGCGAAAGGGAGCGACA	NA	False	NA	NA	False	NA	NA	NA	154713384	154734738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102_154730442_154734596
3361	chr6	-	3694	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	101	165	12	-165	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	636	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTATAGATAACATGTTAGC	4249	False	NA	NA	False	NA	NA	NA	35516722	35486005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
3363	chrX	+	2815	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	-258	5	-21	-5	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	10510	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100472902	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
3364	chr19	+	4762	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	11	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	1	187	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATGATCTGACTGCAAA	1480	False	NA	NA	False	NA	NA	NA	44282525	44295282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44294908_44295166
3365	chr16	+	3480	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	28	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	4	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTCCGTGACTACTGTG	NA	False	NA	NA	False	NA	NA	NA	13598604	13632693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631699_13631762
3366	chr6	-	3901	24	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-3	0	intron_retention	FALSE	non_canonical	0	0	junction_12	141.223414949706	18	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	10	True	NA	NA	False	NA	NA	NA	29609615	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565704_29565782_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
3367	chr4	-	3459	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	351.340251355039	19	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2607	False	NA	NA	False	NA	NA	NA	129229048	129203309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203674_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129213347_129213567_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
3368	chr18	+	3466	17	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	4333	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	439.881500378227	78	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGTCATGGTGGCATATA	NA	False	NA	NA	False	NA	NA	NA	35686462	35725094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690445_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
3369	chr15	-	2960	5	NNC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-80	490	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1737.34270870776	5	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCTAATTGTCCCAAAT	678	False	NA	NA	False	NA	NA	NA	36793843	36770523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36791151_36791233_36793722
3370	chr12	+	5345	20	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	8	1070	at_least_one_novel_splicesite	FALSE	canonical	3	93	junction_10	142.341791458334	543	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATAGTTAAAATGTTTGA	3994	False	NA	NA	False	NA	NA	NA	83679038	83730967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
3371	chr6	-	996	2	NNC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	47163	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTGCCCTCATTTGGT	NA	False	NA	NA	False	NA	NA	NA	38284045	38282234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38283144_38283958
3372	chr8	+	3183	15	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	535.634798864956	8	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8826	False	NA	NA	False	NA	NA	NA	120637551	120684296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668659_120668704_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681630_120682936_120683003_120683321
3373	chr17	-	4374	16	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-353	intron_retention	FALSE	canonical	3	43	junction_15	206.833158742876	4	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTATCCCTTTCCTCCC	8756	False	NA	NA	False	NA	NA	NA	24470302	24441524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
3376	chr7	-	4742	19	NIC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	0	-8	intron_retention	FALSE	canonical	3	1234	junction_18	90.0291619421174	20	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACGGTGAGGTCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	143153827	143111451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143125220_143125334_143128249_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
3377	chr5	-	4356	10	NNC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	89	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	89.8547524798209	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACATTAATTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	74228992	74159397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74161147_74161236_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
3379	chrX	-	3316	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_8	481.082216222375	1182	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227934	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23225889_23225919_23227732
3380	chr14	-	2762	10	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	1315	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1020.87146262881	11053	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTTACGAGCAAATGATC	NA	False	NA	NA	False	NA	NA	NA	63746217	63728480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63728831_63728940_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
3381	chr4	+	4530	18	NNC	ENSMUSG00000028614.15	novel	4584	18	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	149.341739032666	545	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATCTCTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	107225288	107273543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_107225600_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
3382	chr12	+	3966	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	34	-2280	34	2280	multi-exon	FALSE	canonical	3	317	junction_1	0	4	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAACGGTCTATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	57277231	57288948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_57277398_57285148
3383	chr6	-	3221	16	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	-6	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	908.589196991076	1518	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTATCCCTTTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	88875689	88860461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868859_88869024_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
3385	chr11	-	5594	12	NIC	ENSMUSG00000078622.9	novel	5193	13	NA	NA	20	-573	intron_retention	FALSE	canonical	3	609	junction_5	39.8138229245543	59	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTGCTAAGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	106107150	106088806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
3386	chr11	-	2276	2	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-125	1149	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATAGATTTATC	NA	False	NA	NA	False	NA	NA	NA	48644666	48641544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443
3387	chr16	+	3740	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	257.149815636062	1030	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGACTACTGTGTTGAAT	NA	False	NA	NA	False	NA	NA	NA	13598608	13632699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599662_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
3390	chrX	-	3702	12	NNC	ENSMUSG00000031232.18	novel	4531	10	NA	NA	-47	0	intron_retention	FALSE	non_canonical	0	0	junction_1	100.260075028039	132	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105055439	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012837_105013670_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105044576_105044655_105055267
3391	chr18	+	3372	12	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	237.785409195868	75	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13105311	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549_13124795_13124853
3393	chrX	+	4644	29	NNC	ENSMUSG00000031010.18	novel	11887	45	NA	NA	0	6734	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	181.059083123804	19	22	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCTAAATAATGAAATTG	823	False	NA	NA	False	NA	NA	NA	12937752	13006755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979836_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648
3394	chrX	-	3692	27	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_18	124.493607402242	65	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	59223621	59101315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
3395	chr6	+	2418	2	ISM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	3823	0	3823	0	intron_retention	FALSE	canonical	3	4561	junction_1	0	68	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122688349	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122688763_122689587
3396	chr11	+	3850	22	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	9227	2	3801	0	3prime_fragment	FALSE	canonical	3	371	junction_2	110.250755212576	1152	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTTCTTGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	75386872	75400273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
3397	chrX	-	3933	7	NNC	ENSMUSG00000057836.13	novel	3783	7	NA	NA	8	-2	intron_retention	FALSE	canonical	3	133	junction_5	517.713053298403	26	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGTTGGCATGAGTC	NA	False	NA	NA	False	NA	NA	NA	72140657	72129902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72136911_72137788_72137859_72138425_72138689_72140586
3398	chr3	+	2857	18	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	1	-350	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	400.325766998807	257	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4857	False	NA	NA	False	NA	NA	NA	34074254	34124121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34075700_34075800_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
3399	chr7	+	8697	9	Antisense	novelGene_ENSMUSG00000002265.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	114	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACACCTCCTTGTCAGGG	NA	False	NA	NA	False	NA	NA	NA	6706899	6733432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_6714729_6714847_6714942_6715670_6715774_6719051_6719156_6720110_6720191_6720792_6720888_6721424_6721555_6729487_6729574_6733256
3401	chrX	+	1547	1	Intergenic	novelGene_4099	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCTCGAACTCAGAAATC	NA	False	NA	NA	False	NA	NA	NA	160018527	160020074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_160018500_160020100
3402	chr17	-	5227	21	NNC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	6	5	intron_retention	FALSE	non_canonical	0	0	junction_5	126.001150788396	521	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGGGGGGAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	35383867	35368058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369551_35374643_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
3404	chr11	-	3983	27	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1235.42415697328	1	100	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372261_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375541_100384377_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407669_100409931_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
3405	chr16	+	5035	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	5	-1	5	1	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	364	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACAGGTTTTCCTTGGGT	NA	False	NA	NA	False	NA	NA	NA	35803689	35857502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
3406	chr3	+	3236	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	-33	-1822	-1	-3	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	1272	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836556	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
3407	chr19	+	3690	24	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-6	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	276.366110156619	30	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATTGGATGTCTG	1911	False	NA	NA	False	NA	NA	NA	8875482	8894027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879951_8882331_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
3409	chr15	-	6240	34	NNC	ENSMUSG00000022443.18	novel	7433	41	NA	NA	-27	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.408037496435	319	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	NA	False	NA	NA	False	NA	NA	NA	77726332	77644788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77646064_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
3410	chr7	+	3859	3	ISM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	0	0	0	0	intron_retention	FALSE	canonical	3	733	junction_1	44.5	32	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43897720_43898965_43899024_43899444
3411	chr7	-	3705	4	FSM	ENSMUSG00000108446.2_ENSMUSG00000092335.2	ENSMUST00000173283.2	1425	4	-28	-2252	-28	2252	multi-exon	FALSE	canonical	3	207	junction_3	19.6129209111409	111	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGTTTTTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	42241999	42226954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42230333_42232070_42232132_42232329_42232457_42241860
3412	chr2	-	3386	18	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	0	-8	intron_retention	FALSE	canonical	3	90	junction_15	762.364351766457	202	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCCACAAGAAAATT	NA	False	NA	NA	False	NA	NA	NA	156022158	155989176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019827_156020799_156020873_156021096_156021161_156021806
3413	chr19	+	3643	24	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-11	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	276.020197337757	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	1882	False	NA	NA	False	NA	NA	NA	8875453	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882337_8884644_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
3414	chr11	+	3308	11	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	22	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	474.826663109813	3393	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTTTTTCTTCCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	109541768	109560489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544640_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
3415	chr2	-	4727	25	NNC	ENSMUSG00000034032.16	novel	4744	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.279432198019	468	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	482	False	NA	NA	False	NA	NA	NA	119618000	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595401_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
3416	chr10	+	4001	25	FSM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	-100	-3	1	-1	multi-exon	FALSE	canonical	3	265	junction_7	41.1321548993809	543	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAGTAGTTTCTATGGTT	NA	False	NA	NA	False	NA	NA	NA	63079589	63153656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
3417	chr11	+	5795	8	NIC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	34	-733	intron_retention	FALSE	canonical	3	1417	junction_6	122.115702913095	3	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCCCTCCCTTTCCCAGT	NA	False	NA	NA	False	NA	NA	NA	109541780	109559749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109555646_109556690_109556813_109557469_109557552_109558255
3418	chr5	+	2768	6	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1079.41491559085	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493753	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574
3419	chr11	-	3171	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	46	junction_8	147.44311131545	495	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGGCCACTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	6576023	6565599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575964
3421	chr5	-	2126	5	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	3	-595	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3456.5444720848	6	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGAGGAGGAATACTGA	6767	False	NA	NA	False	NA	NA	NA	148989847	148984106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985610_148986536_148986712_148987104_148987251_148987397_148987562_148989709
3422	chrX	+	2541	19	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	826.690538783153	43	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539167_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
3423	chr4	+	3268	10	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078496.10	novel	1244	3	NA	NA	-6	3316	multi-exon	TRUE	non_canonical	0	0	junction_1	117.579077671892	35	95	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCCATTCTTTTCTTGT	4104	False	NA	NA	False	NA	NA	NA	147314734	147601259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314886_147450797_147450891_147469653_147469662_147592003_147592098_147595209_147595337_147596801_147597378_147597462_147597630_147597961_147598100_147599018_147599739_147600065
3424	chr9	+	3548	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	4	-3	4	2	multi-exon	FALSE	canonical	3	965	junction_18	395.630525194118	545	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	21279170	21316659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
3425	chr2	-	2772	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-2	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	513.476971246034	16	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGGCTAAAAGCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	154916369	154901241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154915337_154915627_154916284
3426	chr9	+	4215	9	NIC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	39	-4	intron_retention	FALSE	canonical	3	852	junction_4	71.3038173943022	14	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5551	False	NA	NA	False	NA	NA	NA	35122489	35128306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124583_35124678_35125132_35125232_35125352_35125482_35126927_35127010_35127110_35127233
3429	chr5	+	2914	7	NNC	ENSMUSG00000029110.14	novel	2944	8	NA	NA	36	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1050.37644045679	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAACTAAGTATCTTTCA	NA	False	NA	NA	False	NA	NA	NA	34494311	34510770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34494442_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574
3431	chrX	+	3643	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	312.456235988793	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139647	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95210906_95211105
3432	chr17	-	3772	8	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	-16	-20	intron_retention	FALSE	canonical	3	305	junction_6	57.9690276204915	812	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACCTCTTTTGAGACATA	NA	False	NA	NA	False	NA	NA	NA	53996330	53981833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
3433	chr15	-	3813	17	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-24	294	intron_retention	FALSE	canonical	3	2899	junction_8	224.695488383723	17	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAACAGAGTTGAATTAT	NA	False	NA	NA	False	NA	NA	NA	11399775	11383796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
3434	chr15	-	3702	18	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	7	293	intron_retention	FALSE	canonical	3	2899	junction_9	221.962573608807	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAACAGAGTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	11399744	11383797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
3435	chr3	+	4104	15	FSM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	38	0	0	0	multi-exon	FALSE	canonical	3	641	junction_2	81.4479926714224	818	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTAGTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	157742336	157774124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
3437	chr6	+	3932	23	NIC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	260.452562264384	28	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	87864927	87890577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
3439	chr1	-	3591	15	NIC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-11	20	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	754.011858429999	2371	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	181669902	181642879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181667264_181667368_181669852
3440	chr5	-	3858	24	ISM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	12798	9	8150	-3	3prime_fragment	FALSE	canonical	3	318	junction_10	26.942352517333	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCAGTCTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	108764807	108717288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774
3442	chrX	+	3714	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	312.456235988793	63	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATGACTCAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	95139672	95212155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95211089_95211188
3446	chr4	-	2756	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	2608	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	111.895040104555	1	60	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147891637	147838429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845801_147860133_147860286_147891546
3447	chrX	-	3961	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	140.432799209266	75	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800276	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149767613_149768478_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
3448	chr2	-	2453	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-48	intron_retention	FALSE	canonical	1	4	junction_7	4420.34175538216	293	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGCTATAACTGCGTGA	3736	False	NA	NA	False	NA	NA	NA	154734751	154713385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730031_154730281_154734609
3449	chr19	+	3520	22	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	4138	62	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	272.112880072101	2	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTCTGTATAAGCTGC	6055	False	NA	NA	False	NA	NA	NA	8879626	8894098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879885_8879995_8882298_8882329_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
3450	chr14	+	1242	8	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1226	317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTGCTGGGAGGTGCCT	NA	False	NA	NA	False	NA	NA	NA	63729921	63737638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733345_63733441_63733588_63734392_63734467_63735048_63735094_63737572
3452	chrX	-	3445	9	NNC	ENSMUSG00000016534.16	novel	3604	9	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	329.876776236218	4	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAATTTGCTCACATTTT	NA	False	NA	NA	False	NA	NA	NA	37545298	37508384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37510729_37513143_37513184_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
3453	chr4	-	2682	8	Antisense	novelGene_ENSMUSG00000078496.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGACTGAACTTCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	147600521	147576855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147577002_147578825_147578918_147591986_147592096_147595207_147595336_147596800_147597231_147597988_147598957_147599124_147599469_147600056
3454	chr2	+	2990	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	433	junction_8	680.271901062362	398	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119891_130120075_130120211_130120332
3457	chr5	+	3971	25	NIC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	-23	323	combination_of_known_junctions	FALSE	canonical	3	19	junction_16	112.146822167292	4	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTACTCTAGTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	121536033	121578902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121567395_121567525_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
3458	chr5	+	4181	12	NIC	ENSMUSG00000039191.13	novel	5252	11	NA	NA	14	114	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	188.470924166563	5	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCAGTTGTGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	53713189	53813593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_53713246_53758042_53758093_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
3460	chr9	-	4968	4	NIC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	3873	junction_2	453.461746518442	5	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTAGTGCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	110775174	110768671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110771507_110771597_110771713_110772219_110772322_110773258
3461	chr6	+	5508	44	FSM	ENSMUSG00000034023.17	ENSMUST00000036340.12	5512	44	6	-2	6	2	multi-exon	TRUE	canonical	3	237	junction_19	37.6323336574577	242	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTGTTGGTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	113508648	113573980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113563170_113563210_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
3462	chrX	-	2722	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-7	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	415.306080494697	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTACTTTTACAGTTCTT	NA	False	NA	NA	False	NA	NA	NA	158921416	158905216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158905340_158905460_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
3466	chrX	+	4454	25	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12809	-8	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_15	104.117313308381	5	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACAGCTAAGCCTTGG	8010	False	NA	NA	False	NA	NA	NA	159932936	160041201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
3467	chr7	-	3717	22	NNC	ENSMUSG00000054808.16	novel	3530	22	NA	NA	-4944	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_21	420.098854579547	6	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTCTGGTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	28666709	28592678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28662418_28662518_28666640
3468	chr6	-	3014	7	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	-6	intron_retention	FALSE	non_canonical	0	0	junction_3	2797.78833287216	520	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAATTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51446825	51438109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440474_51441068_51441192_51441407_51441441_51443624_51443686_51443885_51444033_51444164_51444276_51446650
3469	chr2	+	5038	24	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	19	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	73.7849017091359	5	59	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTGCCCTGCCTTCTT	4661	False	NA	NA	False	NA	NA	NA	18069465	18217201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18144078_18144148_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
3470	chr16	-	6188	16	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	-50	-3	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	9.12724858139991	141	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAACTAGACACTCCT	NA	False	NA	NA	False	NA	NA	NA	3821684	3796999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821595
3472	chr19	+	3409	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	51	0	0	0	multi-exon	FALSE	canonical	3	652	junction_7	60.0436480355873	937	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10160302	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
3473	chr1	-	6259	41	FSM	ENSMUSG00000026116.12	ENSMUST00000027290.12	6546	41	273	14	273	-11	multi-exon	FALSE	canonical	3	231	junction_29	35.4925256216009	350	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAAAAGCCTTGAATTGT	7494	False	NA	NA	False	NA	NA	NA	36978335	36831285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835406_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344_36928407_36978245
3474	chr6	+	3182	2	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	3794	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	0	38	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGGTCTTATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	122688320	122691588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122688806_122688891
3475	chr11	-	3236	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	551.030444730968	3	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	352	False	NA	NA	False	NA	NA	NA	106615292	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562610_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
3476	chr2	-	4230	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	-86	-1748	-2	2	multi-exon	FALSE	canonical	3	231	junction_5	32.1212569481487	331	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722985	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
3477	chr11	+	1054	1	Intergenic	novelGene_2422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGATACGTATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	80289974	80291028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_80290000_80291000
3478	chrX	+	2527	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-50	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1092.09430313602	8	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473110	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486981_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
3479	chr6	+	4882	24	FSM	ENSMUSG00000029920.10	ENSMUST00000031984.9	5168	24	286	0	16	0	multi-exon	FALSE	canonical	3	261	junction_1	41.9367603834104	321	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGTAATGGTTTTT	2013	False	NA	NA	False	NA	NA	NA	65019878	65093045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
3481	chr11	+	954	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	46	316	46	292	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	1316	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATGTGTGTGTCCTGAA	9001	False	NA	NA	False	NA	NA	NA	120375484	120379575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
3482	chr5	-	3554	11	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-40	-3	intron_retention	FALSE	canonical	3	1644	junction_8	213.548238110269	8	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTGCTTGTTAATAAC	2280	False	NA	NA	False	NA	NA	NA	138170120	138162864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165702_138165812_138165897_138166102_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
3483	chr4	+	3540	3	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	821	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	28	1	152	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATCTTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	147394998	147419012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147415724
3484	chr16	-	5995	4	Antisense	novelGene_ENSMUSG00000022800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	57	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTACTTTCTGTTTAACT	NA	False	NA	NA	False	NA	NA	NA	32727959	32715574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32719310_32721002_32721078_32722788_32722914_32725899
3485	chr19	+	3566	25	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	270.789813811171	38	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	1909	False	NA	NA	False	NA	NA	NA	8875480	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988_8893155_8893360
3486	chr4	+	2438	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	204.063715540024	19	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGATTGTTTCCAA	892	False	NA	NA	False	NA	NA	NA	145237326	145265757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160_145264829_145265387
3487	chr2	+	4147	32	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	227.367571317883	4	24	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTGTGTCATGTGGCA	4861	False	NA	NA	False	NA	NA	NA	30176421	30234272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191066_30212536_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
3489	chr15	+	2997	10	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	22	4144	22	-2170	intron_retention	FALSE	canonical	3	620	junction_1	88.5462841933214	12	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCAATAAAGAAGAAGACTG	NA	False	NA	NA	False	NA	NA	NA	101982229	102001464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831
3490	chr15	-	3784	15	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	1	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	422.764275516583	2	89	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96953836	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894957_96897403_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
3491	chrX	+	4530	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-5646	3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_13	113.395590743203	4	14	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGCAATTAACAGCTAAG	NA	False	NA	NA	False	NA	NA	NA	159940099	160041195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159940262_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
3492	chrX	+	3791	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-732	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	181.629411317538	1	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAAAGGAGCCTAATCT	NA	False	NA	NA	False	NA	NA	NA	150799471	150844958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805825_150806048_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
3493	chr1	+	3094	12	NIC	ENSMUSG00000026276.21	novel	477	6	NA	NA	-1	-527	combination_of_known_splicesites	FALSE	canonical	3	5	junction_8	382.011033547548	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406943	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93407037_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93431156_93431241_93433265_93433324_93434684_93434805_93435434
3494	chr4	-	3728	15	Antisense	novelGene_ENSMUSG00000092862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.515078753637713	984	17	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTCCGGCGCCGAGAGA	NA	False	NA	NA	False	NA	NA	NA	41012977	40970968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40971063_40976356_40977341_40984890_40985049_40986689_40986770_40988620_40988726_40990787_40990863_40991741_40991883_40993757_40993859_40993962_40994179_40996812_40996925_41003010_41003097_41004326_41004437_41004825_41004943_41009186_41009268_41011709
3495	chr7	-	4434	26	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	29	-1	intron_retention	FALSE	non_canonical	0	0	junction_13	289.662380021983	8	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGGCTGTGTGTTGTGG	NA	False	NA	NA	False	NA	NA	NA	44198233	44182175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188025_44188117_44188196_44188389_44188477_44188589_44188785_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
3496	chr4	-	5101	19	NIC	ENSMUSG00000028906.18	novel	5303	21	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	31.5274229054918	237	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGCCT	5329	False	NA	NA	False	NA	NA	NA	131802612	131650739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131690234_131690298_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
3497	chrX	-	3310	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	26	4	18	3	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	414	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTAGCTTGTTTTGATC	NA	False	NA	NA	False	NA	NA	NA	36127873	36112199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
3498	chr7	+	4487	3	NNC	ENSMUSG00000107181.2	novel	378	4	NA	NA	12	60986	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	11	558	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTTCATTAATAATTTG	NA	False	NA	NA	False	NA	NA	NA	42727486	42806829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42727598_42800443_42800571_42802580
3499	chr2	+	3997	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	35	-438	9	438	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	628	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATTCATTATGAAAAT	NA	False	NA	NA	False	NA	NA	NA	60040265	60079993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
3501	chr4	+	4361	18	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	1	1210	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	190.911055577901	769	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATTATTTTGTATGTAT	5273	False	NA	NA	False	NA	NA	NA	108436651	108473240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436773_108444807_108444946_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
3502	chr5	+	5126	21	NNC	ENSMUSG00000005672.13	novel	5241	21	NA	NA	74	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	295.25065622281	4	160	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	840	False	NA	NA	False	NA	NA	NA	75735688	75817386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801480_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
3503	chr8	-	3926	13	NIC	ENSMUSG00000031835.17	novel	6789	22	NA	NA	5493	-1	intron_retention	FALSE	canonical	3	437	junction_4	46.0786616076851	5	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAGCTGGCATGTGTCG	NA	False	NA	NA	False	NA	NA	NA	120260212	120234895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059
3504	chr6	-	2805	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	2	-3	0	3	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	1768	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
3505	chr5	-	5004	22	FSM	ENSMUSG00000029415.5	ENSMUST00000031364.5	5020	22	6	10	6	-10	multi-exon	FALSE	canonical	3	262	junction_13	31.6626205793221	403	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAAATCGTCCTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	92457877	92431878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
3506	chr4	-	3535	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	-3	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	362.672261897947	10	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080516	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052295_135052435_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
3508	chr2	+	4926	30	NNC	ENSMUSG00000038685.19	novel	4448	33	NA	NA	11	-1	intron_retention	FALSE	canonical	1	14	junction_27	61.2898030053742	5	81	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	NA	False	NA	NA	False	NA	NA	NA	180961565	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992967_180993044_180993161_180993368_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996840_180996919_180997120_180997346_180997443
3511	chr12	+	5386	27	NNC	ENSMUSG00000020608.8	novel	5603	27	NA	NA	-3	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_23	139.38213722538	608	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTAAGGTCATGCTTT	4533	False	NA	NA	False	NA	NA	NA	11316102	11369781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359195_11359306_11364607_11364761_11366619_11366718_11367770
3512	chr17	+	3345	18	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	37	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	379.805331670578	32	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCGCGTGTCTCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	71923246	71966022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945367_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
3514	chr3	+	4939	19	NNC	ENSMUSG00000007379.16	novel	3578	14	NA	NA	1879	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	65.8172976250671	10	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	6596	False	NA	NA	False	NA	NA	NA	103036750	103077047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103036813_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
3515	chr2	+	1114	5	NNC	ENSMUSG00000026785.15	novel	3449	21	NA	NA	6291	2574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2049	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGCCCGAGCCCACCCG	780	False	NA	-55	True	NA	NA	NA	29980955	29983608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29981577_29981676_29981848_29982002_29982077_29982415_29982556_29983500
3516	chr18	+	3444	17	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	4333	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	434.874982035067	85	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGTCATGGTGGCATATA	NA	False	NA	NA	False	NA	NA	NA	35686462	35725094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
3521	chr15	-	5098	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	-26	4	-26	-4	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	445	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGTTTCTTACTTTC	2154	False	NA	NA	False	NA	NA	NA	4025252	4011520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
3522	chrX	+	3446	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-737	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	237.246463192859	2	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGGTTTTAAAGGAGCCT	NA	False	NA	NA	False	NA	NA	NA	150799449	150844953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805835_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812333_150816701_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
3523	chr14	-	4289	25	NNC	ENSMUSG00000037572.18	novel	4260	25	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_9	90.5830554273566	376	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	NA	False	NA	NA	NA	47514314	47478400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489370_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
3524	chr4	+	2351	8	Fusion	ENSMUSG00000078498.6_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-35	0	multi-exon	FALSE	non_canonical	0	0	junction_1	35.3426377173001	36	44	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147390095	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147390233_147534439_147534577_147578832_147578926_147637751_147637856_147665698_147665826_147667290_147667436_147667927_147668788_147668907
3525	chr16	+	5733	29	NNC	ENSMUSG00000038084.17	novel	6230	29	NA	NA	0	-297	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_28	107.086818678556	7	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATGATTCTATTATTGG	NA	False	NA	NA	False	NA	NA	NA	29398209	29473405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470713
3526	chrX	+	3751	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-740	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	235.010224363868	1	61	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGATTGGTTTTAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	150799449	150844950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812048_150812265_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820601_150824328_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
3527	chr15	+	2950	17	NIC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	10	-4	intron_retention	FALSE	canonical	3	1727	junction_9	139.566964214315	1176	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756694	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
3528	chr16	-	4360	13	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	-94	4	intron_retention	TRUE	canonical	1	1	junction_3	616.88590697326	75	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTTAAATATTCATTCA	8734	False	NA	NA	False	NA	NA	NA	91525957	91486225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489486_91490192_91490231_91490512_91490591_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
3529	chr6	-	3644	15	NNC	ENSMUSG00000040669.15	novel	3893	15	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	300.051050078251	5	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTCTTACTGCATTCTG	9094	False	NA	NA	False	NA	NA	NA	122316599	122294691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300612_122302491_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
3530	chr18	+	4432	15	NNC	ENSMUSG00000024614.8	novel	4611	16	NA	NA	1009	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	87.8884090707051	2	16	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATCATTGCATAATTGC	5869	False	NA	NA	False	NA	NA	NA	90529404	90561375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541787_90545993_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90551714_90551817_90552505_90552563_90555198_90555329_90556622_90556692_90558062
3531	chr10	+	3783	7	Antisense	novelGene_ENSMUSG00000075232.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTTAGGAGAGTTGAGCGA	NA	False	NA	NA	False	NA	NA	NA	40163468	40178127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_40166269_40166372_40166616_40167992_40168033_40169159_40169263_40170176_40170304_40170712_40170802_40177746
3532	chr7	+	3617	10	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	10	-248	intron_retention	FALSE	canonical	0	0	junction_9	314.822701426268	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868011	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103870411_103870506_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
3533	chr2	+	5432	11	NIC	ENSMUSG00000027397.15	novel	3316	11	NA	NA	-1	1	intron_retention	FALSE	canonical	3	19	junction_5	173.636430509268	23	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATTTCTCTTGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	129040682	129053530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129046165_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
3534	chr18	+	2504	16	ISM	ENSMUSG00000003779.17	ENSMUST00000166044.3	3107	19	1956	4	1538	-3	3prime_fragment	FALSE	canonical	3	938	junction_10	92.5439475180426	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	487	False	NA	NA	False	NA	NA	NA	34760041	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
3536	chr4	+	1959	5	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078497.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	3	-138	multi-exon	TRUE	canonical	0	0	junction_1	90.2340706163697	2	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACTAATCAGAATTCTTC	2380	False	NA	NA	False	NA	NA	NA	147445770	147669517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147445910_147592042_147592098_147595209_147595337_147667290_147668023_147668611
3537	chr4	+	1949	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	87	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	129.658097403217	1	20	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576960	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801_147597094_147598016_147598315_147598898_147599525_147600065
3538	chr1	+	5721	9	FSM	ENSMUSG00000026782.16	ENSMUST00000052332.15	5768	9	47	0	-29	0	multi-exon	TRUE	canonical	3	110	junction_7	24.0559244262198	168	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGTGTCTTGTAGAATC	NA	False	NA	NA	False	NA	NA	NA	60448824	60520317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60509824_60509999_60515898
3539	chr10	+	2648	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	6	2	intron_retention	FALSE	non_canonical	0	0	junction_11	450.226675322107	9	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1567	False	NA	NA	False	NA	NA	NA	79690444	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698333_79698650_79698704_79698811_79698890_79698978
3540	chr15	-	2867	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-59	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	711.346005041772	1454	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283854	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248649_81248738_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
3544	chr8	-	2981	16	NIC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	376.66138049388	3	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86026118	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85987939_85988623_85988768_85989939_85990180_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
3546	chr8	-	5310	13	NNC	ENSMUSG00000033658.17	novel	3104	12	NA	NA	28	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.240162943315	158	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGGTATTTTGTCTGCAT	NA	False	NA	NA	False	NA	NA	NA	111758355	111729817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731178_111732416_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
3548	chr19	+	3370	24	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	356.469015189497	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATAATAATTGGATGTC	1906	False	NA	NA	False	NA	NA	NA	8875477	8894025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879679_8882331_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988_8893571_8893774
3549	chr17	+	2654	5	Fusion	ENSMUSG00000116802.2_ENSMUSG00000096696.2	novel	975	3	NA	NA	-90	277	multi-exon	FALSE	canonical	0	0	junction_1	53.0707075513413	2	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCCCAAGTATGCTGCTC	NA	False	NA	NA	False	NA	NA	NA	17284284	17486602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_17284469_17455551_17455705_17482739_17482867_17483108_17483170_17484473
3550	chrX	-	3345	10	NNC	ENSMUSG00000016534.16	novel	3604	9	NA	NA	-7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.301413444618	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTGCTCACATTTTTT	NA	False	NA	NA	False	NA	NA	NA	37545298	37508382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37508520_37508746_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
3551	chr6	+	3365	6	NIC	ENSMUSG00000029767.17	novel	1670	7	NA	NA	20	-4	combination_of_known_junctions	FALSE	canonical	3	303	junction_2	262.624446691469	27	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGGCTTATGTGTCTTT	8310	False	NA	NA	False	NA	NA	NA	29356489	29376667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_29356697_29361292_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
3553	chr5	-	4398	28	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	74.3073364272572	7	45	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGGTGCAGTCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	108777600	108717290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739049_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
3556	chr17	+	3222	19	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	20	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	370.081005480265	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCCAGCGCGTGTCTCGT	NA	False	NA	NA	False	NA	NA	NA	71923229	71966018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470_71965624_71965823
3558	chr2	+	5820	10	NIC	ENSMUSG00000038533.16	novel	6069	11	NA	NA	46	-19	combination_of_known_junctions	FALSE	canonical	3	63	junction_1	140.841474671541	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCTTTTCTGACTCAAG	5403	False	NA	NA	False	NA	NA	NA	154278500	154381257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_154278557_154346472_154346715_154352427_154352518_154357736_154357919_154359628_154359883_154363070_154363157_154365823_154366020_154370756_154370826_154373141_154373333_154376803
3559	chr8	+	3210	15	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	417.867307568675	21	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAAGCTGTGTTTCTTG	8833	False	NA	NA	False	NA	NA	NA	120637558	120684292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668397_120668450_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
3560	chr8	-	4188	23	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	-15	5	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_18	111.712413021743	670	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCATGTGTCGTGCCCC	8126	False	NA	NA	False	NA	NA	NA	120285489	120234889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268407_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
3562	chr15	-	2997	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	972.418891219211	88	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	38300950	38294656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296000_38296046_38296409_38296858_38297772_38297865_38298097_38300802
3564	chr10	-	3604	20	NIC	ENSMUSG00000020124.11	novel	4666	21	NA	NA	0	519	combination_of_known_splicesites	FALSE	canonical	2	4	junction_15	129.833197910929	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCCATTTTGGTAATTTG	NA	False	NA	NA	False	NA	NA	NA	123032831	122948613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
3565	chr19	-	6738	54	NNC	ENSMUSG00000048612.17	novel	6633	54	NA	NA	-16	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	39.0990198990534	239	52	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGATGTTTGTCCTCT	8881	False	NA	NA	False	NA	NA	NA	38031822	37887679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913159_37916801_37916859_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934147_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
3566	chr7	-	2644	19	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	3	-459	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	809.78549971925	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATAGTTGCTTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	126165580	126146085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146656_126146803_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161813_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
3567	chr17	-	4090	15	NIC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	265.733217451531	23	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATCGAACTGTGGTGGA	NA	False	NA	NA	False	NA	NA	NA	29226915	29189863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29198693_29199497_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
3568	chr6	+	6018	5	FSM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	38	10	-8	-5	multi-exon	FALSE	canonical	3	27	junction_2	95.7405347802069	208	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACTACAGTTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	149210963	149237151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_149211403_149211819_149211876_149226902_149231283_149232923_149233005_149236089
3571	chr18	+	4100	23	Antisense	novelGene_ENSMUSG00000024613.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	52	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAGAAATGGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	60946899	60978941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_60947261_60947594_60947643_60948031_60948127_60949072_60949603_60951102_60951283_60951933_60952022_60952463_60952682_60954711_60954837_60955875_60956062_60961435_60961632_60961727_60961907_60962084_60962187_60964583_60964752_60964844_60965070_60965500_60965693_60965788_60966006_60966494_60966708_60968729_60968976_60970967_60971046_60971749_60971932_60972642_60972706_60976297_60976441_60978876
3573	chr17	-	3231	15	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-3	97	intron_retention	FALSE	non_canonical	0	0	junction_5	169.818165058022	457	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTACTGTCATTTATAAAA	NA	False	NA	NA	False	NA	NA	NA	79244473	79227176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229748_79230685_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
3574	chr5	-	3168	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	18	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGTCGGCGGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	135963462	135937267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938079_135938434_135940506_135963176
3575	chr13	-	3677	10	NNC	ENSMUSG00000021556.13	novel	3954	10	NA	NA	-3614	-4	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	157.741779931008	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTTAGGGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	59827239	59782813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59827057
3576	chr2	+	3003	7	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	157	-11	intron_retention	FALSE	canonical	3	1876	junction_5	263.465156878265	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAAACCAGATAGTATGT	NA	False	NA	NA	False	NA	NA	NA	130116568	130121216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119545_130119768_130119891_130120075
3577	chr12	+	2544	18	ISM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	0	17882	0	405	5prime_fragment	FALSE	canonical	3	1156	junction_13	60.4705882352941	5	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTGTCTGCCACTATG	7911	False	NA	NA	False	NA	NA	NA	76302071	76348695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031
3579	chr7	+	4647	38	FSM	ENSMUSG00000039187.17	ENSMUST00000036865.13	4645	38	-2	0	2	0	multi-exon	TRUE	canonical	3	260	junction_14	37.7798783892034	327	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAGTTTTGAAAAT	NA	False	NA	NA	False	NA	NA	NA	79042057	79100012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
3580	chr5	-	4462	29	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	116.919402511617	43	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGCAGTCTCTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	108777606	108717287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730112_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772233_108772289_108772895_108772958_108777366
3584	chr11	-	5032	8	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	81	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGGGCGCCTGCGCAGGC	1331	False	NA	NA	False	NA	NA	NA	50277350	50268591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50268628_50269115_50269252_50270293_50273888_50274006_50274142_50274506_50274748_50275470_50275563_50275966_50276016_50276601
3585	chr8	-	3557	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	58	178	-12	-178	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	251	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTACCGGTGTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	80438311	80410268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
3586	chr5	-	4977	14	NIC	ENSMUSG00000029472.14	novel	2413	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	1753	junction_9	174.064158748855	39	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	122959343	122925789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122926082_122926364_122926528_122929670_122929998_122931499_122931622_122932479_122932555_122937401_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
3587	chr11	-	4269	10	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_8	118.026780806961	464	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	61470500	61408074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61456647_61456721_61470392
3588	chr11	+	2038	9	Antisense	novelGene_ENSMUSG00000017286.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	11	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGGACACCCCGCCCACC	NA	False	NA	NA	False	NA	NA	NA	76111687	76134500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_76112857_76123846_76123934_76124026_76124142_76124722_76124813_76125214_76125358_76128498_76128642_76130278_76130398_76131697_76131752_76134382
3590	chr6	+	3904	22	NIC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	1	7	junction_1	206.233471817645	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	87864897	87890577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_87865055_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
3592	chr19	+	2105	10	Fusion	ENSMUSG00000090840.3_ENSMUSG00000042729.12	novel	1204	11	NA	NA	-1	-10	intron_retention	FALSE	canonical	3	1028	junction_5	75.4630152237947	92	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGAAAACACTTAGGCCT	980	False	NA	NA	False	NA	NA	NA	8713207	8718578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8717329_8717459_8717517_8717765
3593	chr19	+	2378	10	NNC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	25	-1	intron_retention	FALSE	non_canonical	0	0	junction_8	63.4083376532662	324	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGTGTTGATGTCATTTC	6673	False	NA	NA	False	NA	NA	NA	8718900	8733005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727268_8727392_8732272
3594	chr10	-	962	1	Intergenic	novelGene_3468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGGGAGGCAGAGGTAGGC	NA	False	NA	NA	False	NA	NA	NA	71070693	71069731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_71069700_71070700
3595	chrX	-	4713	29	Antisense	novelGene_ENSMUSG00000031010.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	44	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACTGGCGGTTAGCGGCCT	7411	False	NA	NA	False	NA	NA	NA	13006754	12908089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_12908347_12909793_12909894_12960160_12960415_12964686_12964833_12966669_12966750_12969564_12969680_12970821_12971041_12973303_12973420_12973902_12974153_12974226_12974366_12976308_12976466_12977328_12977434_12979796_12980004_12980744_12980882_12982860_12982995_12987669_12987755_12989401_12989750_12990806_12990901_12991632_12991844_12994443_12994688_12995215_12995365_12996463_12996584_12997963_12998095_12998306_12998587_13001181_13001307_13002681_13002808_13003844_13004014_13006347_13006456_13006647
3596	chr6	+	4240	30	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	-17	0	combination_of_known_splicesites	TRUE	canonical	3	101	junction_26	58.2477793996823	479	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	NA	False	NA	NA	NA	116184981	116239626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233576_116233790_116235602_116236218_116237451_116237630_116239295
3597	chr19	-	3269	18	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	278.714957764489	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576804	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568503_40574591_40574637_40576753
3599	chr1	+	3112	14	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	268.867557197981	169	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406740	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434_93437000_93437084
3600	chr12	-	3494	4	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	190	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGAGAGGTTGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	86568392	86516885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86517328_86535318_86535359_86561110_86561323_86565592
3601	chr11	+	4528	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103099.8	4789	24	256	5	171	-5	multi-exon	FALSE	canonical	3	23	junction_1	55.4078195296328	358	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCAAGCTGTTTATTG	525	False	NA	NA	False	NA	NA	NA	101443230	101472772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
3603	chr8	+	3195	15	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	417.867307568675	847	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTAAAGCTGTGTTTCT	8846	False	NA	NA	False	NA	NA	NA	120637571	120684290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321_120684133_120684186
3606	chr5	+	3619	9	FSM	ENSMUSG00000041264.17	ENSMUST00000119685.8	3604	9	-11	-4	-7	0	multi-exon	FALSE	canonical	3	22	junction_2	126.885713833355	421	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121465	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149121617_149124517_149124645_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
3608	chrX	-	3072	13	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	1	-4362	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	38.020736301246	1	70	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTATCCATTTAATTAT	NA	False	NA	NA	False	NA	NA	NA	49724179	49656363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49656571_49658153_49659169_49662100_49662229_49666747_49666902_49669457_49669669_49670279_49670434_49684337_49684592_49687010_49687166_49689620_49689776_49715313_49715387_49716083_49716187_49719767_49719873_49723821
3609	chr14	+	1485	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1082.36623499935	164	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6575	False	NA	NA	False	NA	NA	NA	76741953	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744360_76744594
3612	chr8	+	3143	14	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-16	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	433.459429385354	8	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTTCTTGGTGTGC	8811	False	NA	NA	False	NA	NA	NA	120637536	120684298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678808_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
3613	chr16	-	4081	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	-7	671	-7	-120	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	24	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTCAGCTGCCTGGAG	NA	False	NA	NA	False	NA	NA	NA	8610179	8508129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
3615	chr4	-	2897	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-1	254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	233.355281705814	1742	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAGTGTTTAGCATTA	NA	False	NA	NA	False	NA	NA	NA	147726966	147696139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702962_147725321_147725463_147726791
3619	chr4	-	4154	4	NIC	ENSMUSG00000028568.17	novel	3141	6	NA	NA	-34	-180	intron_retention	FALSE	canonical	3	1115	junction_2	33.5956346370576	4	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATATTCTTTTTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	108687782	108671671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_108675442_108676332_108676535_108683296_108683411_108687714
3620	chr5	-	5073	21	NIC	ENSMUSG00000029415.5	novel	5020	22	NA	NA	4	-4	intron_retention	FALSE	canonical	3	262	junction_12	29.9337184459265	390	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTCCTTGTGAAATCTCT	NA	False	NA	NA	False	NA	NA	NA	92457844	92431872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_92434730_92436325_92436488_92437598_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
3621	chr8	+	5731	18	NNC	ENSMUSG00000031753.17	novel	2737	19	NA	NA	-1	2	intron_retention	FALSE	canonical	0	0	junction_9	99.8032666876315	10	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATGCCATTGTGTTGGGT	9632	False	NA	NA	False	NA	NA	NA	111573669	111608855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590640_111590694_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
3623	chr13	-	3983	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	75	367	-13	-367	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATGCTTCAAGTTTGGT	NA	False	NA	NA	False	NA	NA	NA	96807369	96785841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
3624	chrX	+	3429	27	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	1031.1381802385	2	93	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20545898_20545943_20546022_20547021_20547111_20547346_20547440_20547563_20547754_20548141_20548244_20548347_20548453_20548706
3625	chr19	-	4429	1	NIC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	7807	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	9971	False	NA	NA	False	NA	NA	NA	44387322	44382893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44382900_44387300
3626	chr7	-	6690	7	FSM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	-10	13	4	-13	multi-exon	FALSE	canonical	3	57	junction_5	5.55777733351102	184	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAAAAAACCACTTGTTT	NA	False	NA	NA	False	NA	NA	NA	35502424	35471780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35500862_35500954_35502258
3629	chr1	-	7150	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	3	-24	combination_of_known_junctions	FALSE	canonical	3	147	junction_23	24.5588861491903	235	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATTAAAGCCTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	74544959	74474693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
3630	chr2	-	3216	12	NIC	ENSMUSG00000027206.14	novel	3392	13	NA	NA	9142	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_9	280.463577282003	1045	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGGTGTGTGCATGTGA	NA	False	NA	NA	False	NA	NA	NA	125691774	125672223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684680_125686729_125686856_125690126_125690205_125691659
3634	chr6	-	589	1	Genic_Genomic	ENSMUSG00000029752.13	novel	NA	NA	NA	NA	-539	-7931	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCGGCGACTCTAAGGTG	1028	False	NA	NA	False	NA	NA	NA	7693793	7693204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_7693200_7693800
3635	chr12	+	4534	21	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-3	-47	intron_retention	FALSE	canonical	3	13	junction_17	185.646566087283	40	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGAGATGCTTTCTTTG	3978	False	NA	NA	False	NA	NA	NA	83679022	83729850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721664_83721817_83722093_83722855_83722955_83724628_83724677_83728276
3637	chr2	+	3490	22	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	292.118146197508	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7220	False	NA	NA	False	NA	NA	NA	29779823	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481_29821193_29821512
3638	chr1	+	3213	14	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	-23	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	402.290645322023	4	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406759	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93407185_93407322_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425120_93426767_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
3640	chr3	-	3522	26	FSM	ENSMUSG00000042520.17	ENSMUST00000195995.5	3516	26	-3	-3	0	2	multi-exon	FALSE	canonical	3	204	junction_21	259.732465433184	333	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTTCTTTCCGTGCA	3547	False	NA	NA	False	NA	NA	NA	89959782	89913523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
3641	chrX	-	5255	16	FSM	ENSMUSG00000031278.13	ENSMUST00000033634.5	5280	16	25	0	-6	0	multi-exon	TRUE	canonical	3	129	junction_14	18.9168942717585	303	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTGTTTTTTCTTAT	NA	False	NA	NA	False	NA	NA	NA	141173506	141100988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134905_141143382_141143433_141173300
3642	chr5	-	3805	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	-16	13	-3	-13	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	1308	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTGTGTCATCTTGAG	NA	False	NA	NA	False	NA	NA	NA	149559819	149540021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
3643	chr19	-	3716	11	NNC	ENSMUSG00000013662.7	novel	3771	10	NA	NA	3	-179	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	168.874539229571	1272	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACATCTGTAATTTACGG	NA	False	NA	NA	False	NA	NA	NA	32689717	32649216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32673820_32673959_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
3644	chr10	+	2800	12	NIC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	-2	3	intron_retention	FALSE	canonical	3	24	junction_1	511.356921168029	96	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1587	False	NA	NA	False	NA	NA	NA	79690464	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
3645	chr16	+	2498	16	FSM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	56	0	56	0	multi-exon	FALSE	canonical	3	2657	junction_7	154.998007155648	1313	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	NA	False	NA	NA	NA	20317622	20328073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
3646	chr16	-	2144	9	ISM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	58	3162	22	1163	5prime_fragment	FALSE	canonical	3	749	junction_8	89.8164795569276	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATAATAGAATTAGCATA	6288	False	NA	NA	False	NA	NA	NA	38370562	38348660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
3647	chr2	+	3201	19	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	32	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAGATGACAAGAATAGAG	1063	False	NA	NA	False	NA	NA	NA	4995534	5015522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4996949_4997688_4997835_4998553_4998667_4999379_4999496_5000533_5000673_5001910_5002044_5003385_5003453_5003539_5003646_5004484_5004594_5005672_5005870_5006075_5006194_5008820_5008985_5009751_5009922_5011153_5011390_5011877_5012013_5012138_5012239_5013290_5013624_5015499
3648	chr1	-	2818	16	NIC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	856.333361878811	11	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	NA	False	NA	NA	False	NA	NA	NA	128287420	128259329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
3650	chr1	+	1823	15	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	-16	18507	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	395.775884839398	25	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTTTGTTCAGGTAATA	NA	False	NA	NA	False	NA	NA	NA	85992397	86022048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017849_86021997
3651	chr12	-	3496	7	Fusion	ENSMUSG00000113691.2_ENSMUSG00000071362.4	novel	1740	3	NA	NA	-6286	166638	multi-exon	TRUE	non_canonical	0	0	junction_1	5.31245915016974	14	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTATTTTGTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	23840418	23662640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_23662707_23828969_23830280_23830418_23831525_23831692_23832410_23833744_23833806_23834005_23834133_23840309
3652	chr18	-	3741	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	-32	0	-32	0	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	1737	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	NA	NA	NA	35065092	35035837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
3653	chr8	-	5186	3	ISM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	1648	16	1648	-16	3prime_fragment	FALSE	canonical	3	240	junction_1	16.5	485	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGATAAAACAACATATTGT	NA	False	NA	NA	False	NA	NA	NA	89769142	89753878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_89755447_89756571_89760027_89768979
3654	chrX	+	3528	8	ISM	ENSMUSG00000015291.11	ENSMUST00000146013.8	3696	9	261	1	6	1	intron_retention	FALSE	canonical	3	736	junction_5	42.2972957113075	37	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGGCTCTTTAGGTT	6223	False	NA	NA	False	NA	NA	NA	73348878	73355465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73353741_73353995_73354141_73354243
3655	chr11	+	4633	25	NNC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	-31	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_24	68.3111625618797	9	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAACCAAGCTGTTTATT	947	False	NA	NA	False	NA	NA	NA	101443652	101472771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101465942_101466049_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471144
3656	chr1	+	3387	11	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	543.193004373215	14	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACGTACTGTGTCTGTGCT	895	False	NA	NA	False	NA	NA	NA	58432294	58446510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442840_58444246
3657	chr11	-	4002	15	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	2	intron_retention	FALSE	canonical	2	4	junction_13	451.977316795831	4	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239136	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75198118_75200958_75201092_75203125_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231911_75232969_75233021_75239051
3658	chr14	+	4529	24	NIC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	13	0	intron_retention	FALSE	canonical	2	9	junction_1	98.5648817623407	322	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTCATTACTCGCG	NA	False	NA	NA	False	NA	NA	NA	20724434	20744918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20724457_20725798_20725928_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
3661	chr11	-	3519	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	38	2	0	-2	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	1	122	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
3665	chr16	-	3259	16	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	16	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	392.147217253929	1	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAATACTTGGTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	15455248	15441971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454540_15454970
3667	chr4	+	4133	22	NNC	ENSMUSG00000028397.14	novel	1844	8	NA	NA	391	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	71.2580822483617	377	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTTCTGTCTGTCAA	NA	False	NA	NA	False	NA	NA	NA	74170563	74324098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_74170651_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
3668	chr2	+	3456	21	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_20	295.689241434314	6	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7243	False	NA	NA	False	NA	NA	NA	29779846	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481_29821058_29821479
3669	chr5	-	3176	12	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-35	-1	intron_retention	FALSE	canonical	3	1920	junction_5	161.60517134349	3	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCTTGTTAATAACTC	2285	False	NA	-124	True	NA	NA	NA	138170115	138162862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167987_138168578_138168659_138169987
3670	chr17	+	3003	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	458.328974524728	495	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4860	False	NA	NA	False	NA	NA	NA	87979956	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026106_88026234_88026715_88026964_88028310_88028487_88030758
3671	chr1	+	4822	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	75	9	-13	-9	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	1	160	17	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095315	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
3672	chr2	-	4131	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	-27	11	-27	-11	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	1031	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAAAATAATTTTATCTC	NA	False	NA	NA	False	NA	NA	NA	39116490	39084376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
3673	chr10	-	3170	2	Genic_Genomic	ENSMUSG00000063953.4	novel	3218	1	NA	NA	0	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2677	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35587888	35584676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_35586460_35586501
3674	chr7	+	2844	4	FSM	ENSMUSG00000046364.15_ENSMUSG00000077575.3	ENSMUST00000156921.2	526	4	39	-2357	-11	587	multi-exon	FALSE	canonical	0	0	junction_1	7943.43973911107	152	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGGCACTAGATCCTCT	NA	False	NA	NA	False	NA	NA	NA	109118465	109122161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109118683_109118791_109118856_109119124_109119201_109119674
3675	chr14	+	4552	24	NIC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	-23	1	intron_retention	FALSE	canonical	3	56	junction_6	85.7457665656559	333	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTCTCATTACTCGCGA	NA	False	NA	NA	False	NA	NA	NA	20724352	20744919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
3676	chr12	+	3357	3	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	32	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	323.5	21	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516922	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517281_86561127_86561325_86565594
3677	chr1	-	2876	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	1	133	junction_16	800.92949908216	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	NA	False	NA	NA	False	NA	NA	NA	128287426	128259329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287251
3678	chr19	+	4261	28	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-36	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1163.93061182177	1	156	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTAAGAAGAAACTCTTAT	594	False	NA	NA	False	NA	NA	NA	10582914	10607173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10587192_10588065_10588185_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602534_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
3680	chr7	+	4714	36	NIC	ENSMUSG00000039187.17	novel	4645	38	NA	NA	8	-3	intron_retention	FALSE	canonical	2	7	junction_25	70.0462587676668	297	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTAGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	79042067	79100009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098929_79099387
3681	chr16	+	3425	7	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-103	-512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1515.01643738791	71	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTTGTCAAACTTTAGCA	NA	False	NA	NA	False	NA	NA	NA	84571170	84622304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609956_84618165_84618191_84619674
3682	chrX	+	4809	13	FSM	ENSMUSG00000037315.16	ENSMUST00000115384.9	4866	13	54	3	25	-3	multi-exon	FALSE	canonical	3	119	junction_1	19.6800801714717	374	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTCTGTCAGTGTGATG	NA	False	NA	NA	False	NA	NA	NA	20291980	20386175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20292070_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
3684	chr16	-	3217	16	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	347.260107444293	24	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCATAACTGTATCATTG	8120	False	NA	NA	False	NA	NA	NA	4867717	4831774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836833_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
3685	chr3	+	3316	19	FSM	ENSMUSG00000068823.11	ENSMUST00000197827.5	2671	19	13	-658	5	3	multi-exon	FALSE	canonical	0	0	junction_1	4852.0480914866	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCCTGTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	102927940	102965123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
3686	chr8	+	5969	6	NNC	ENSMUSG00000091490.4	novel	1395	7	NA	NA	43	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	203.354468846888	37	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAATGTGGCTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	43633620	43646914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_43633661_43636158_43636403_43636739_43636836_43638315_43643129_43643305_43643407_43646239
3688	chr6	-	3050	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-35	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3652.41490113048	3	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	9010	False	NA	NA	False	NA	NA	NA	122719384	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705550_122706114_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719343
3690	chr16	-	6282	16	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	23	-1	combination_of_known_junctions	FALSE	canonical	3	6	junction_15	13.6521874519149	139	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACTCCTCTCTGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	3821593	3796988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_3798037_3798444_3798556_3798684_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821421
3691	chrX	+	3453	9	FSM	ENSMUSG00000015291.11	ENSMUST00000146013.8	3696	9	233	10	-11	-8	multi-exon	FALSE	canonical	3	736	junction_5	44.1572120383522	40	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAAACTTAAGCCTGGCT	6195	False	NA	NA	False	NA	NA	NA	73348850	73355456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73353741_73353995_73354141_73354243_73354299_73354392
3692	chr18	-	2514	16	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1327.22389302718	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACCAAAACACTTTG	NA	False	NA	NA	False	NA	NA	NA	64649585	64632732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633365_64633442_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
3693	chr9	-	3952	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	228.429112363114	858	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	108526561	108480140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108526427
3694	chr3	+	7363	12	NIC	ENSMUSG00000042035.12	novel	7371	11	NA	NA	53	-15	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	19.1665169475527	125	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTTCTCAAGACACTT	305	False	NA	NA	False	NA	NA	NA	101284451	101370360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101340230_101340291_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
3695	chr10	-	4651	22	NNC	ENSMUSG00000020124.11	novel	11525	22	NA	NA	38	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	179.107208928757	4	54	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTCTTTTATTTCTTAC	NA	False	NA	NA	False	NA	NA	NA	123032793	122947639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_122949593_122955013_122955103_122957476_122957588_122959871_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004264_123007004_123007132_123011747_123011879_123017577_123017706_123032731
3696	chr2	+	4715	29	NIC	ENSMUSG00000038685.19	novel	4307	33	NA	NA	6	-7	intron_retention	FALSE	canonical	1	2	junction_26	58.3136312695131	1	84	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGGATGGTGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	180961560	180998400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991370_180991461_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997209_180997346_180997443_180997606_180997716
3697	chr18	+	4311	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	2944	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGCAATGATTTAAATG	NA	False	NA	NA	False	NA	NA	NA	57506952	57526028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
3698	chr4	+	2796	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2293	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	129.658097403217	318	58	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAACTGGTAACATTCT	NA	False	NA	NA	False	NA	NA	NA	147533648	147600236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147591995_147592098_147595209_147595337_147596801_147597357_147597524_147598217_147599053
3699	chr7	-	4011	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	12	-15	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_4	78.7541886011292	113	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATTGGAGCTTACGTTT	NA	False	NA	NA	False	NA	NA	NA	42155137	42122824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
3701	chr1	-	5231	10	Antisense	novelGene_ENSMUSG00000026349.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCCATGACACTTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	127734460	127701971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127702123_127702837_127702918_127719339_127719471_127721094_127721155_127722990_127723053_127725575_127725621_127727123_127727290_127729341_127729413_127729897_127731028_127731125
3703	chr11	-	3277	1	Genic_Genomic	ENSMUSG00000086998.2_ENSMUSG00000087607.2	novel	NA	NA	NA	NA	-227	-170	mono-exon	FALSE	NA	NA	NA	NA	NA	159	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTGTATATTGCACAGGA	NA	False	NA	NA	False	NA	NA	NA	46038170	46034893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_46034900_46038200
3704	chr2	+	2950	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	433	junction_8	685.43995907738	5	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGATAGTATGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	130116348	130121222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119545_130119768_130119891_130120075_130120211_130120332
3705	chr8	-	3969	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	-4400	-1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_9	136.81699049785	22	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTGAGCTGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	81561913	81491069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81561848
3706	chr4	+	3179	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	4	2572	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	128.132106572451	4	81	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147576877	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147577596_147577748_147592035_147592098_147595209_147595337_147596801_147597359_147597529_147598049_147598717_147599216_147599381
3707	chr6	-	7006	40	FSM	ENSMUSG00000030091.18	ENSMUST00000032179.14	7037	40	27	4	-6	-2	multi-exon	FALSE	non_canonical	3	302	junction_34	44.9993644487226	291	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGGATGCGGTGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	91093784	90990053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_90991479_90992805_90992890_90992967_90993064_90994313_90994531_90995718_90995970_90997124_90997272_90998378_90998503_91002203_91002341_91003740_91003962_91005707_91005884_91007065_91007241_91008603_91008696_91011705_91011865_91013334_91013467_91014606_91014688_91017528_91017709_91017829_91017893_91019236_91019373_91019487_91019616_91020728_91020858_91030353_91030456_91030546_91030652_91031371_91031479_91032206_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
3709	chr9	+	4584	6	NNC	ENSMUSG00000057982.9	novel	1425	6	NA	NA	6	-359	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	56.3418139573088	1015	132	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTCTCCTGTTTGTTGGT	803	False	NA	NA	False	NA	NA	NA	22137072	22154291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150029_22150284
3710	chr8	-	5638	13	FSM	ENSMUSG00000004319.16	ENSMUST00000110301.2	4099	13	-12	-1527	-7	-7	multi-exon	FALSE	canonical	3	96	junction_11	50.7408995672021	269	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTGTGGTTTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	61436285	61363429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
3711	chr8	+	3311	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	420	-5	-34	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	1628	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8793	False	NA	NA	False	NA	NA	NA	120637518	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
3712	chr7	-	6687	7	FSM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	-8	14	6	-14	multi-exon	FALSE	canonical	3	57	junction_5	5.55777733351102	186	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTAAAAAACCACTTGTT	NA	False	NA	NA	False	NA	NA	NA	35502422	35471781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35500862_35500954_35502258
3713	chr11	-	3144	3	NNC	ENSMUSG00000035455.13	novel	2974	3	NA	NA	2	-88	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_2	266.5	1569	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758930	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11753064_11756095_11756216_11758594
3714	chr19	+	3857	11	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	2	-9	intron_retention	FALSE	canonical	3	438	junction_4	152.615235150361	2104	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTCCTAATGTGTTCAG	139	False	NA	NA	False	NA	NA	NA	46064303	46073958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071803_46071958_46072283_46072450
3716	chr9	+	4324	25	NIC	ENSMUSG00000032267.9	novel	4133	24	NA	NA	3	1	combination_of_known_splicesites	FALSE	canonical	3	15	junction_19	223.484712377976	435	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGACCCTTTTTGAAATA	NA	False	NA	NA	False	NA	NA	NA	48896677	48953818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48944876_48944973_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
3717	chr7	-	4122	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	9	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	115.762328357142	2	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTACGTTTACTTACTGC	NA	False	NA	NA	False	NA	NA	NA	42155140	42122815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42154964
3718	chr17	-	3069	16	NNC	ENSMUSG00000024081.10	novel	2920	16	NA	NA	-11	128	intron_retention	FALSE	non_canonical	0	0	junction_14	165.681810173061	4	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAACTTATAGTGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	79244481	79227145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239781_79242289_79243497_79244303
3719	chr16	-	3358	18	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	432.432637712707	16	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTACCATAACTGTATC	8107	False	NA	NA	False	NA	NA	NA	4867730	4831778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832637_4832697_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866093_4866218_4866613_4866651_4867669
3720	chr2	+	3667	20	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	268.155761574078	347	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7209	False	NA	NA	False	NA	NA	NA	29779812	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
3721	chr18	+	3582	11	Antisense	novelGene_ENSMUSG00000024587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.5	4	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCTTCCTTGACTGAGG	NA	False	NA	NA	False	NA	NA	NA	64633517	64649570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_64634946_64636577_64637543_64637916_64638449_64640841_64640932_64642316_64642386_64643522_64643601_64644679_64644771_64644851_64644949_64645054_64645120_64648395_64648483_64649490
3722	chr7	+	3991	6	NNC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_2	54.3080104588632	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	NA	False	NA	NA	NA	41248667	41277957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_41248825_41261099_41261320_41261794_41261922_41262579_41262676_41274146_41274257_41274676
3723	chr18	+	4501	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26799	1910	at_least_one_novel_splicesite	FALSE	canonical	2	34	junction_2	442.925388082783	11	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6286	False	NA	NA	False	NA	NA	NA	77126104	77243406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
3724	chr11	-	3701	17	NIC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	165.236383705284	55	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	NA	False	NA	NA	NA	40624235	40592221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_40593686_40594608_40594763_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
3725	chr19	-	3072	22	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	500.962176257666	2465	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3910	False	NA	NA	False	NA	NA	NA	5345439	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324053_5324158_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
3726	chr10	-	3207	17	NIC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	18	0	intron_retention	FALSE	canonical	3	2860	junction_10	350.123460367911	5538	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	86541355	86526703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
3728	chr8	-	3781	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	102	-1543	-4	0	multi-exon	FALSE	canonical	3	1367	junction_2	144.59416385948	3278	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGCTGTTTTGCCTAC	NA	False	NA	NA	False	NA	NA	NA	125589757	125563683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
3729	chr10	-	2808	11	NIC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-11	1	intron_retention	FALSE	canonical	3	1853	junction_10	117.066177865342	4365	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	8734	False	NA	NA	False	NA	NA	NA	128401814	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
3731	chr5	+	3978	11	NIC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-13	-19	intron_retention	FALSE	canonical	3	2266	junction_5	159.318203605238	3	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGTTTGTTCACTGTGA	NA	False	NA	NA	False	NA	NA	NA	45650832	45670014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449
3733	chr15	+	4085	12	NIC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-33	-5	intron_retention	FALSE	canonical	3	1651	junction_4	133.067372484147	1222	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959414	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
3734	chr5	+	3248	6	NNC	ENSMUSG00000029110.14	novel	2895	8	NA	NA	1	-5	intron_retention	FALSE	non_canonical	0	0	junction_4	1001.66733000533	772	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGTATCTTTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	34493761	34510775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133
3735	chr11	-	3475	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9034	-22	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_16	471.412886305625	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATTGATTTTTACTCT	390	False	NA	NA	False	NA	NA	NA	106615254	106545065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606191_106615168
3736	chrX	-	3311	10	NNC	ENSMUSG00000016534.16	novel	3604	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.301413444618	260	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	NA	False	NA	NA	NA	37545291	37508383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37508496_37508748_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
3737	chr18	-	2611	16	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	2	-219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2189.29959779124	17	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	201	False	NA	NA	False	NA	NA	NA	35087408	35070685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35074000_35074917_35075137_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
3738	chr4	-	2377	11	FSM	ENSMUSG00000028896.14	ENSMUST00000105951.8	2326	11	-51	0	-51	0	multi-exon	FALSE	canonical	0	0	junction_10	167.562525643415	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	NA	False	NA	NA	False	NA	NA	NA	132078998	132059233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132078921
3740	chr5	+	3576	20	NIC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	2	-10	intron_retention	FALSE	canonical	3	453	junction_14	44.6156252519283	567	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGCATCATTCCTATACT	NA	False	NA	NA	False	NA	NA	NA	45827262	45857459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853887_45856182_45856253_45857189
3741	chr7	+	3565	5	NNC	ENSMUSG00000045411.17	novel	3610	4	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	329.48065193574	42	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGCTGTTTGATTCGG	NA	False	NA	NA	False	NA	NA	NA	43896210	43901743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896649_43896700_43897720_43898965_43899024_43899444_43899484_43899732
3742	chr1	+	4765	22	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	66	413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	96.8749807987692	12	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAGATAGT	8399	False	NA	NA	False	NA	NA	NA	191307953	191355271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191327531_191327731_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276_191353910_191353955
3743	chr6	+	6231	19	FSM	ENSMUSG00000029992.15	ENSMUST00000113658.8	6238	19	4	3	0	-3	multi-exon	FALSE	canonical	3	65	junction_15	18.2452429112053	171	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGTGACTTTTTCT	9949	False	NA	NA	False	NA	NA	NA	87019831	87069176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_87019988_87027902_87028011_87030732_87030841_87031582_87031709_87033125_87033185_87034611_87034747_87036361_87036424_87037502_87037583_87040786_87040893_87043605_87043770_87044665_87044762_87050363_87050462_87053238_87053360_87054064_87054223_87059454_87059570_87062233_87062362_87063285_87063454_87064298_87064461_87065095
3744	chr1	-	6278	7	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	-1072	-655	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	171.184760484753	12	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTTAGCATTACCAATGT	3847	False	NA	NA	False	NA	NA	NA	88201913	88190847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88194001_88194051_88194381_88195669_88195749_88197042_88197136_88197923_88198039_88199164_88199974_88200213
3746	chr13	+	3950	32	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_31	376.656132077291	5	90	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGGAAGTAGTTATTCT	NA	False	NA	NA	False	NA	NA	NA	49835619	49887742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49887268
3747	chr16	-	3054	17	NIC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	0	-10	intron_retention	FALSE	canonical	3	963	junction_14	113.904410993385	74	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCCGTGGCAGACGTTT	NA	False	NA	NA	False	NA	NA	NA	3895691	3857844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
3749	chr10	-	4472	25	NIC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	100.456449588311	535	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAATCTGTGTAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	62628061	62579712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
3750	chr10	+	2887	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	226	-3	1	3	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	812	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1609	False	NA	NA	False	NA	NA	NA	79690486	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
3751	chr2	-	3765	29	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	18	-11	combination_of_known_junctions	FALSE	canonical	2	8	junction_16	69.4678019675596	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGGAAGGACCATTTGC	NA	False	NA	NA	False	NA	NA	NA	103591568	103551615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565262_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
3753	chrX	+	3405	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-5	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	312.456235988793	37	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTCACTATGACTCAGT	NA	False	NA	NA	False	NA	NA	NA	95139697	95212151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95211280_95211659
3756	chr14	-	2797	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	0	-299	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1148.92795139643	670	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8754	False	NA	NA	False	NA	NA	NA	52341456	52310833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
3758	chrX	-	3157	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	354.813485334196	1	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227934	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23101873_23101936_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
3759	chr8	+	3367	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	261.086192664415	61	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5065	False	NA	NA	False	NA	NA	NA	107329998	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392101_107395884
3760	chrX	-	3885	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-117	-7	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_28	106.155564274939	15	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAATTGATACTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	59224566	59101325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941_59224048_59224496
3761	chr10	+	2580	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	17	5	17	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	550	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21854587	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
3763	chr1	-	1540	7	Antisense	novelGene_ENSMUSG00000026615.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCCTCCCCACGGGC	NA	False	NA	NA	False	NA	NA	NA	185112547	185095290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_185095440_185099726_185099809_185101769_185101872_185103083_185103241_185105112_185105264_185106318_185106407_185111736
3764	chr10	-	4201	24	NIC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	4	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	110.123371269731	419	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCTGTGTAGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	62628061	62579711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
3765	chr5	+	4022	9	NIC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	-15	2	intron_retention	FALSE	canonical	3	185	junction_1	1061.84035405517	4	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	312	False	NA	NA	False	NA	NA	NA	77099179	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77112470_77114093_77114253_77114494
3768	chr18	+	4255	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	-11	-3721	-11	0	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGCAATGATTTAAATG	NA	False	NA	NA	False	NA	NA	NA	57506952	57526028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
3770	chr6	-	3832	18	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	11	6	intron_retention	FALSE	canonical	3	759	junction_14	57.3399381941656	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGGGCTGACTGGTTT	7916	False	NA	NA	False	NA	NA	NA	124806387	124791994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
3771	chr10	+	2824	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	13	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	443.8353689272	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGTTTGAGCTTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	128173615	128198343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836_128197386_128197469
3772	chr11	-	4254	14	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	1	-1	intron_retention	FALSE	canonical	3	42	junction_6	945.219807879152	5	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGTCCTTGGCTTTGG	5931	False	NA	NA	False	NA	NA	NA	100510445	100473644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480504_100480605_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100489555_100490010_100490136_100492553_100492643_100510353
3773	chr14	+	4097	3	FSM	ENSMUSG00000025290.18	ENSMUST00000225994.2	4059	3	-43	5	-6	-5	multi-exon	FALSE	canonical	3	9630	junction_1	1373	12	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACACGTCTGCTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	24540742	24545921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_24540827_24541817_24541884_24541974
3774	chr5	-	4283	10	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	-16	intron_retention	FALSE	canonical	3	1644	junction_7	170.432782449074	3	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTTTTGATTGCCTCTT	2286	False	NA	-123	True	NA	NA	NA	138170114	138162877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138165029_138165307_138165702_138165812_138165897_138166102_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
3778	chr10	+	2901	1	NIC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	8086	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTCTCTTGATCAAAAGT	NA	False	NA	NA	False	NA	NA	NA	41404125	41407026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41404100_41407000
3779	chr2	-	3024	27	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.192307692307692	1	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTCCCACGTGCGTTC	NA	False	NA	NA	False	NA	NA	NA	146919911	146854954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855115_146866425_146866556_146866634_146866746_146867113_146867225_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871547_146871644_146871703_146871786_146871895_146876771_146876817_146878578_146878714_146880086_146880206_146882733_146882870_146883905_146884015_146884092_146884182_146884777_146884851_146889552_146889639_146891211_146891308_146891900_146891939_146905219_146905280_146910709_146910774_146916802_146916944_146919396
3781	chr12	+	3031	9	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	19	-58	intron_retention	FALSE	canonical	3	5416	junction_8	465.180996360556	15	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTGAACTTTCATGGCA	NA	False	NA	NA	False	NA	NA	NA	24758258	24764087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
3782	chr14	-	3596	25	Antisense	novelGene_ENSMUSG00000021913.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAGGTCACGTGACACGG	NA	False	NA	NA	False	NA	NA	NA	32070099	32043984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_32044073_32045834_32045905_32047750_32047952_32048931_32049105_32054135_32054240_32054441_32054557_32054702_32054858_32055664_32055811_32057288_32057381_32059396_32059577_32059709_32059838_32061160_32061341_32061856_32062011_32062599_32062702_32063155_32063286_32063994_32064145_32065156_32065284_32066276_32066459_32066669_32066743_32066839_32066966_32067066_32067139_32068353_32068516_32068652_32068814_32069465_32069693_32069801
3783	chr15	-	4769	34	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-20	-2	intron_retention	FALSE	canonical	0	0	junction_23	109.324908967924	1	89	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGACGAGTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	76491731	76480012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485527_76485585_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
3785	chr13	-	2782	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2922.15548432253	4	58	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	4762	False	NA	NA	False	NA	NA	NA	58550319	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543099_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
3787	chr2	+	3476	13	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	857.6004152414	8	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162896544	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896626_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
3789	chr14	+	3737	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	44	-2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	114.037154426933	737	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32044019	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044134_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
3790	chr8	+	3351	16	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	244	3819	intron_retention	FALSE	canonical	3	1913	junction_1	367.527051158596	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTCACCCTACCTCCTA	NA	False	NA	NA	False	NA	NA	NA	111760791	111780461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822
3791	chr15	-	2712	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-37	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	711.346005041772	1109	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283832	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248337_81248554_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
3793	chr8	-	3311	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	18	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	2021.71725685534	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43759955	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43759201_43759877
3794	chr12	+	3985	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	21	-2286	21	2286	multi-exon	FALSE	canonical	3	317	junction_1	0	708	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTATGTTTTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	57277218	57288954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_57277398_57285148
3797	chr16	-	2866	21	Antisense	novelGene_ENSMUSG00000006998.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.653834841531101	19	38	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCAGAAGGCCACGCG	NA	False	NA	NA	False	NA	NA	NA	20482155	20470416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20470599_20470990_20471050_20471341_20471506_20473295_20473418_20473565_20473791_20474000_20474162_20474306_20474406_20474636_20474691_20475290_20475439_20475616_20475723_20476229_20476359_20476722_20476810_20478153_20478318_20478427_20478526_20478701_20478850_20479089_20479173_20480311_20480491_20480591_20480658_20480839_20480970_20481371_20481489_20481810
3799	chr18	+	3090	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	66	577	12	297	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCGCCTGAGGGGAGAG	NA	False	NA	NA	False	NA	NA	NA	35251977	35387255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
3800	chr15	+	1695	10	Antisense	novelGene_ENSMUSG00000002524.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCGCCGCTGCAGCCGC	986	False	NA	NA	False	NA	NA	NA	75942043	75949489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_75942479_75942599_75942830_75943024_75943166_75943313_75943506_75943588_75943801_75944079_75944174_75944254_75944424_75947396_75947480_75947584_75947687_75949452
3801	chr8	-	3687	8	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	2	150	junction_1	523.121595885347	2989	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACATGTTGCTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	125589753	125563688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
3802	chr6	-	1636	8	Antisense	novelGene_ENSMUSG00000038279.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTAAGAACTCGATCAACT	NA	False	NA	NA	False	NA	NA	NA	125121716	125114615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_125114683_125116597_125116689_125116766_125116907_125117494_125117636_125117750_125117841_125117996_125118121_125118235_125118471_125120968
3803	chr18	+	4234	20	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	-106	-2	intron_retention	FALSE	canonical	3	200	junction_1	176.404251178352	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGATACCAATTGTCAAGA	96	False	NA	NA	False	NA	NA	NA	3383118	3436372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
3804	chr2	-	4246	19	NIC	ENSMUSG00000039671.19	novel	5072	22	NA	NA	-23	-36	combination_of_known_splicesites	FALSE	canonical	3	46	junction_18	177.154610927403	8	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAAAATTTGTATTAAAC	NA	False	NA	NA	False	NA	NA	NA	165700116	165626110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165699974
3805	chr5	-	4657	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	28	-128	17	128	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	483	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGTAGTTTTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	74229064	74159258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
3806	chr5	+	4489	13	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	14	0	intron_retention	FALSE	non_canonical	0	0	junction_4	276.261789592569	9	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815943	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33822311_33822513_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
3807	chr4	+	4035	18	FSM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	289	260	21	-237	multi-exon	FALSE	canonical	3	529	junction_11	46.6085071760132	44	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGAGCCCCTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	107225269	107273283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
3808	chr1	+	4130	32	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	20	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	259.189603920445	1	91	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGAGCCTCCTGCTTGCCG	3087	False	NA	NA	False	NA	NA	NA	171910418	171949887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940926_171942596_171942714_171944492_171944583_171944750_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
3809	chr9	-	4205	6	FSM	ENSMUSG00000042688.17	ENSMUST00000049355.11	4072	6	-19	-114	-19	112	multi-exon	FALSE	canonical	3	266	junction_5	19.2727787306346	326	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACGGCTCCTGTTTGACT	NA	False	NA	NA	False	NA	NA	NA	75317306	75294071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317144
3810	chr5	+	6970	7	NIC	ENSMUSG00000041264.17	novel	3757	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	353	junction_3	20.7739152678438	11	124	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121525	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
3811	chr2	+	3669	14	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	-2253	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	821.605420780329	750	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162894353	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162894534_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
3813	chrX	+	5335	7	ISM	ENSMUSG00000043384.16	ENSMUST00000113144.8	5843	11	53378	16	-1477	-8	3prime_fragment	FALSE	canonical	0	0	junction_1	59.1326193117358	171	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAGTGAGCAGAAATTGC	9761	False	NA	NA	False	NA	NA	NA	134696859	134704207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_134697086_134697697_134697787_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
3814	chr2	+	2985	26	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	68	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	227.56563536703	1	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTTGGTGTCTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	146854983	146919917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867122_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
3815	chr18	+	3092	18	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-25	-2	intron_retention	FALSE	canonical	3	938	junction_12	101.310854666992	201	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTGGATTCCAAATTTA	6224	False	NA	NA	False	NA	NA	NA	34758034	34765855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
3816	chr10	-	2441	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	-8	-1	-8	1	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	10812	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	8737	False	NA	NA	False	NA	NA	NA	128401811	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
3817	chr4	-	3390	17	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	526.703541941527	2	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080462	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059116_135059468_135059552_135065252_135065387_135067813_135067934_135068157_135068347_135069680_135069795_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
3818	chr8	+	3738	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	-266	intron_retention	FALSE	non_canonical	0	0	junction_11	270.246939230152	1	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAACCACTGGAAAGAATT	5066	False	NA	NA	False	NA	NA	NA	107329999	107396612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388553_107390901_107391056_107392025_107392157_107392818_107392963_107395037
3819	chr2	+	5342	26	FSM	ENSMUSG00000027598.17	ENSMUST00000109685.8	5309	26	-38	5	-3	-5	multi-exon	FALSE	canonical	3	73	junction_2	35.1837689851443	168	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAGCATTTGCCTTTTC	NA	False	NA	NA	False	NA	NA	NA	154975440	155068768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_154975506_154980115_154980193_154999693_154999896_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
3820	chr8	-	4316	27	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-2	-253	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	213.742355135098	2	82	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGTGTGTAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	111573421	111537123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552881_111556150_111556180_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
3822	chrX	+	3798	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	312.456235988793	27	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139643	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95211086_95211134
3823	chr15	-	5160	2	NNC	ENSMUSG00000009575.15	novel	8803	5	NA	NA	-44079	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	407	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGATCTTGAGTGGTAGT	7307	False	NA	NA	False	NA	NA	NA	103192322	103099976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_103105075_103192260
3824	chr5	+	3276	13	NNC	ENSMUSG00000029267.18	novel	4060	15	NA	NA	2803	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	790.674654786798	1	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAATTTTAACTGAACA	NA	False	NA	NA	False	NA	NA	NA	108228833	108256652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108228890_108229002_108229085_108234864_108234934_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
3825	chr11	+	2122	16	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	17	4173	-5	3032	5prime_fragment	FALSE	canonical	3	2354	junction_12	152.295093668692	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCACTGATGACGCTGAT	NA	False	NA	NA	False	NA	NA	NA	72332197	72338421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378
3827	chr10	+	2856	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	60	6	-27	-6	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	2256	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41395469	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
3828	chr9	-	4553	36	NNC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	101	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	243.897141250577	2	40	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCCAGCTAGTGATTGAG	NA	False	NA	NA	False	NA	NA	NA	20864040	20818507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827217_20829771_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843409_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
3829	chr9	+	4733	9	NNC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	1	-1	intron_retention	TRUE	canonical	0	0	junction_8	193.522568128371	1	86	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGAACCTTTTATAGT	9073	False	NA	NA	False	NA	NA	NA	15217510	15228265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15226428_15226678_15227322_15227484
3830	chr7	+	3953	6	NNC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	17	-35	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	71.2162902712575	9	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATAAATTAGAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	41248725	41277922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_41248825_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274282_41274676
3831	chrX	-	3757	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	-64	6	-64	-6	multi-exon	FALSE	canonical	3	187	junction_5	11.6535640709422	457	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATAGTTCTTGTCATC	NA	False	NA	NA	False	NA	NA	NA	166165809	166129323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
3832	chr3	-	3344	20	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	-8	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	299.904232174963	21	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104725629	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702381_104702693_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
3833	chr3	+	4323	24	FSM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-7	0	-7	0	multi-exon	FALSE	canonical	3	521	junction_3	142.05353233605	771	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	68912063	68941956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
3834	chr5	-	1681	11	ISM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	570	2473	-34	1004	5prime_fragment	FALSE	canonical	3	1644	junction_8	161.350550045545	10	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACCTCCGGTGAATGAAG	2286	False	NA	-123	True	NA	NA	NA	138170114	138165317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
3835	chr2	+	2851	11	ISM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	10	17278	10	-7517	intron_retention	FALSE	canonical	3	422	junction_10	57.8639784321818	10	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCCTGATTCTAAAGGTA	NA	False	NA	NA	False	NA	NA	NA	118428701	118454794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550
3837	chr6	-	5424	22	FSM	ENSMUSG00000033769.17	ENSMUST00000160197.6	5439	22	9	6	-2	-6	multi-exon	TRUE	canonical	3	201	junction_13	26.9684454901315	258	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCACTGTGTTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	85046486	84595474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_84988299_84988466_85046277
3838	chr14	+	4449	41	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	128	junction_40	173.452039480659	38	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCACTCTGATTGTCGT	NA	False	NA	NA	False	NA	NA	NA	47886773	47974018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
3840	chr12	+	3024	26	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	283.55561288749	8	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7872	False	NA	NA	False	NA	NA	NA	76302032	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76361151_76361283_76361722_76361876_76364380_76364475_76366354
3841	chr12	-	4687	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	219	-2210	-47	2210	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	817	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGGATCCTCAGTAAGA	NA	False	NA	NA	False	NA	NA	NA	4957486	4926821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
3844	chrX	-	3123	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3362	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	356.280959986609	2	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227930	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094914_23101545_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
3846	chr11	-	4239	10	FSM	ENSMUSG00000001036.18	ENSMUST00000001063.15	4243	10	4	0	4	0	multi-exon	FALSE	canonical	3	47	junction_6	113.072029921715	459	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	61470507	61408074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61470392
3847	chr9	+	4139	4	Intergenic	novelGene_1066	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCTGGGCTGGCGAGAT	NA	False	NA	NA	False	NA	NA	NA	58125364	58138557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129152_58136640_58136691_58137110
3850	chrX	+	3093	23	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	30	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1137.98616166113	2	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20529166	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529372_20534695_20534805_20534930_20534958_20535384_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542341_20545642_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
3851	chr2	+	6017	16	NNC	ENSMUSG00000026843.16	novel	3648	18	NA	NA	-23	-39	intron_retention	FALSE	canonical	0	0	junction_13	174.707934056305	5	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCGTAAATGTAAATTCA	610	False	NA	NA	False	NA	NA	NA	31462779	31506689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502925_31503042_31503120_31504722_31504795_31505509
3854	chr10	-	4429	25	FSM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	-33	-534	-33	0	multi-exon	TRUE	canonical	0	0	junction_11	85.6392222576133	528	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTAGTTCCTTCAGAA	NA	False	NA	NA	False	NA	NA	NA	62628098	62579706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
3855	chr5	+	2803	8	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	995.176366278862	67	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493801	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574_34509393_34509467
3856	chr11	+	5316	18	NIC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	-22	-5	intron_retention	FALSE	canonical	3	140	junction_4	24.4577172032847	351	95	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCTTCCAGTCCACTGA	2825	False	NA	NA	False	NA	NA	NA	78192427	78213278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210899_78211157_78211279_78211386_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
3857	chr11	+	4609	22	ISM	ENSMUSG00000017119.21	ENSMUST00000103099.8	4789	24	-8	3415	-8	1905	intron_retention	TRUE	canonical	3	23	junction_1	56.5478947361701	1	107	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCTACATAGTAAAACCTT	261	False	NA	NA	False	NA	NA	NA	101442966	101469362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019
3858	chr11	+	3481	14	NIC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	655	junction_7	78.033978337311	1194	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788916	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74789042_74789202_74789307_74790007_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
3859	chr9	+	4775	7	NIC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	-5	-14	intron_retention	FALSE	canonical	3	822	junction_4	93.0329989245154	6	90	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAAGAAATTGCCTCTTA	5507	False	NA	NA	False	NA	NA	NA	35122445	35128296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_35122702_35123287_35124583_35124678_35125132_35125232_35126029_35126113_35126927_35127010_35127110_35127233
3860	chr3	-	3519	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	-491	165	-491	-165	multi-exon	FALSE	canonical	3	308	junction_2	396.900211360208	1617	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCTAAAATTGTGTCTG	8682	False	NA	NA	False	NA	NA	NA	104772312	104730259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
3861	chr5	+	5309	42	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	4	7	combination_of_known_junctions	TRUE	canonical	3	49	junction_32	30.4982031048296	253	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCCTCCCTCCCTCTCTC	2017	False	NA	NA	False	NA	NA	NA	33021068	33149012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33021166_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
3863	chr8	-	3599	9	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	-17	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	701.986455976894	1290	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	125589721	125563701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565404_125565450_125565630_125565710_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
3864	chr7	+	1923	1	FSM	ENSMUSG00000063902.14	ENSMUST00000051522.16	1378	1	-27	-518	-27	518	mono-exon	FALSE	NA	NA	NA	NA	NA	23	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAGTTGGATTCACTA	NA	False	NA	NA	False	NA	NA	NA	83405084	83407007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83405100_83407000
3865	chr11	-	3675	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	237	0	intron_retention	FALSE	canonical	3	150	junction_3	570.471345078397	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714597	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96714383
3866	chr11	+	3592	19	Antisense	novelGene_ENSMUSG00000020330.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	55	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCTCGCCTGAATTCAA	NA	False	NA	NA	False	NA	NA	NA	40592221	40624235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_40592463_40592806_40593685_40594607_40594765_40596719_40596896_40598176_40598279_40598391_40598544_40598840_40598992_40600648_40601104_40604837_40605016_40605533_40605689_40606069_40606246_40606697_40606772_40612467_40612567_40612656_40612744_40614224_40614414_40615699_40615750_40619255_40619334_40619948_40620046_40624138
3870	chr17	-	7845	38	NNC	ENSMUSG00000024251.11	novel	7784	38	NA	NA	-1	18	at_least_one_novel_splicesite	TRUE	canonical	2	26	junction_37	16.4770908096234	147	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCATGCTGTCCCAAAG	NA	False	NA	NA	False	NA	NA	NA	84773634	84497485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_84499760_84500727_84500898_84530101_84530234_84533315_84533470_84536564_84536638_84537169_84537289_84538218_84538593_84559761_84559857_84580133_84580253_84617314_84617484_84641453_84641586_84644220_84644311_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771883_84773521
3872	chr7	-	3830	16	NIC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	12	-8	intron_retention	FALSE	canonical	0	0	junction_3	396.59364033675	30	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCCTCTGTTGCCCTA	NA	False	NA	NA	False	NA	NA	NA	33867988	33840120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
3873	chr10	-	3056	20	FSM	ENSMUSG00000040354.15	ENSMUST00000145275.8	3065	20	-1	10	-1	-10	multi-exon	FALSE	canonical	3	1393	junction_14	176.876657025606	219	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTGCAAGCCGAGCCCT	NA	False	NA	NA	False	NA	NA	NA	127147548	127132104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127132310_127132409_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
3874	chr10	-	2868	19	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	-424	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	1130.947095727	10	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATCCCAAATACTCAG	NA	False	NA	NA	False	NA	NA	NA	86541797	86526718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541397_86541606_86541744
3875	chr15	+	3335	19	NIC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	7	-16	intron_retention	FALSE	canonical	3	800	junction_1	75.4777377038348	526	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTCTTTATAGGGAGGC	NA	False	NA	NA	False	NA	NA	NA	89239972	89257013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
3876	chr18	+	4303	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	2931	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCAAAGGTGTGCAATGA	NA	False	NA	NA	False	NA	NA	NA	57506952	57526020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
3877	chr11	-	3861	13	NNC	ENSMUSG00000078622.9	novel	5193	13	NA	NA	-482	1193	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	242.099999426316	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAGTTATTAAAAATAAC	NA	False	NA	NA	False	NA	NA	NA	106107652	106090411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106092769_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106107536
3878	chrX	-	3886	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-924	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_28	111.169731418554	10	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	59225373	59101315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941_59224048_59225312
3879	chr11	-	2194	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48644038_48644163
3880	chr5	+	3893	7	NIC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	4763	-1	intron_retention	FALSE	canonical	3	3017	junction_3	241.312211322455	4	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCGCTGTGTGGTCTAT	5519	False	NA	NA	False	NA	NA	NA	77104386	77115355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77112470_77114093_77114253_77114494
3881	chr7	-	2557	20	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	16	-456	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	614.277099174824	3	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165567	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146840_126151336_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
3882	chr3	+	5727	38	FSM	ENSMUSG00000028068.15	ENSMUST00000071812.11	5756	38	29	0	-20	0	multi-exon	FALSE	canonical	3	183	junction_11	23.9826757536325	230	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCGTTGTTGCTATAG	NA	False	NA	NA	False	NA	NA	NA	87989306	88028355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87989400_87991237_87991326_87993456_87993614_87994584_87994663_87996200_87996278_87996967_87997036_87997123_87997238_87997444_87997624_87998042_87998122_87998777_87998942_87999718_87999807_88001890_88002055_88004208_88004367_88005624_88005747_88006163_88006328_88007932_88008024_88008734_88008903_88008984_88009125_88009203_88009375_88011366_88011451_88011607_88011680_88011772_88011843_88014818_88015028_88015667_88015821_88016113_88016278_88016578_88016804_88017301_88017443_88019610_88019696_88019904_88020138_88020406_88020540_88020653_88020757_88021230_88021358_88022210_88022299_88023210_88023424_88024086_88024254_88024505_88024608_88024982_88025092_88027469
3883	chr1	-	3170	21	Antisense	novelGene_ENSMUSG00000103984.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	119	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGGTCGCTGCAGGACCA	NA	False	NA	NA	False	NA	NA	NA	86977786	86631452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86631596_86672403_86672549_86673060_86673219_86681946_86682002_86688008_86688110_86748941_86749171_86782079_86782185_86784850_86785095_86806122_86806294_86858471_86858554_86887462_86887576_86901119_86901228_86917811_86918046_86948757_86948838_86971736_86971923_86972550_86972636_86974755_86974906_86975168_86975299_86975407_86975515_86976554_86976655_86977342
3884	chr18	-	3742	31	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	13	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	641.000472352053	1	74	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTTTGGGCCATGTTA	NA	False	NA	NA	False	NA	NA	NA	42395170	42335417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361277_42361718_42361862_42362693_42362777_42362855_42362922_42363009_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42390134_42390260_42395025
3886	chr4	+	3532	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10	novel	2813	7	NA	NA	11	2577	multi-exon	FALSE	non_canonical	0	0	junction_2	128.235074667581	2	147	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	147216505	147600520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147219028_147219122_147541451_147541542_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147597216_147597881_147598853_147599020
3887	chr10	-	3308	17	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	-225	-5	intron_retention	FALSE	canonical	0	0	junction_13	1176.94285518669	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTCAGTGCTTATTTT	NA	False	NA	NA	False	NA	NA	NA	86541598	86526708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537883_86538772_86538890_86539323_86539466_86540157_86540261_86541397
3888	chr11	+	4328	25	NIC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_20	55.70358057512	71	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCAAGCTGTTTATTG	987	False	NA	NA	False	NA	NA	NA	101443692	101472772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101465942_101466049_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
3889	chr17	-	3554	7	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.9868012003477	4	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTTTGTATTTTAC	NA	False	NA	NA	False	NA	NA	NA	22533841	22504851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507883_22508749_22508877_22511388_22511437_22528185_22528243_22528485_22528579_22532217_22532302_22533727
3890	chr10	+	2904	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	20	2	20	-2	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	30	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173622	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
3891	chr2	+	5469	7	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	43	-1	intron_retention	FALSE	canonical	3	1115	junction_2	80.5722588046834	1	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8612	False	NA	NA	False	NA	NA	NA	72306545	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315657_72316063
3892	chr15	+	2719	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-37	-581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	224.467626965573	22	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGTCCTGGTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	101982261	102005027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687_102003896_102004395
3893	chr2	-	5270	17	NIC	ENSMUSG00000098950.8	novel	5505	17	NA	NA	-5298	-7	combination_of_known_junctions	FALSE	canonical	2	4	junction_15	81.0805926224026	1	132	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTCCTCAGTGGCCGCT	-9	True	NA	NA	False	NA	NA	NA	155945303	155913771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155938337_155940293_155945268
3894	chr6	-	3907	24	NNC	ENSMUSG00000012535.15	novel	3590	24	NA	NA	-2	1	intron_retention	FALSE	non_canonical	0	0	junction_23	141.223414949706	11	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTTTTATTTCCCT	11	True	NA	NA	False	NA	NA	NA	29609614	29540824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364_29609470_29609542
3895	chr19	-	4053	11	Antisense	novelGene_ENSMUSG00000098363.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	197	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCAGCGCACGCCAGGCT	9231	False	NA	NA	False	NA	NA	NA	10174231	10160363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10160628_10162289_10162400_10163046_10163245_10163739_10163838_10164112_10164246_10168801_10168865_10170275_10171161_10171357_10171452_10171676_10171762_10171852_10171979_10172234
3896	chrX	+	2693	11	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-44	-2	intron_retention	FALSE	canonical	3	3075	junction_4	309.759923166313	43	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGTGCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473296	100492195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
3897	chr5	-	2983	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	3	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963421	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938958_135939462_135940506_135963176
3902	chr11	+	3158	10	NIC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	25	-5	combination_of_known_splicesites	FALSE	canonical	2	44	junction_2	477.798888422501	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAAACGAATCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	109541771	109560477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_109541900_109544604_109544788_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
3904	chr18	+	3451	17	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-25	-3	intron_retention	FALSE	canonical	3	938	junction_12	103.324125933879	174	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	6224	False	NA	NA	False	NA	NA	NA	34758034	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34765117_34765353
3905	chr9	+	4208	6	Antisense	novelGene_ENSMUSG00000042688.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	570	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGGGGCCTCGCAGAG	NA	False	NA	NA	False	NA	NA	NA	75294067	75317302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_75296428_75297446_75297651_75300646_75300816_75302794_75302936_75304859_75306039_75317147
3906	chr19	+	3571	13	NNC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	331.316429397772	1465	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGTTCAGAGTTATGTC	23	False	NA	NA	False	NA	NA	NA	46064446	46073967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068613_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
3907	chr11	+	1304	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	212	7	-2	-7	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	1660	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAAGTGCGAGACCCTG	NA	False	NA	NA	False	NA	NA	NA	95275729	95282595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
3908	chrX	-	4014	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-416	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_28	111.006865709711	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCTGGTGTTCGTGTAT	NA	False	NA	NA	False	NA	NA	NA	59224865	59101316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941_59224048_59224675
3909	chr7	+	5389	17	Antisense	novelGene_ENSMUSG00000035401.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	20	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGGCAAGATGGCGACAG	NA	False	NA	NA	False	NA	NA	NA	98238163	98305766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98240091_98242536_98243016_98243956_98244524_98246242_98246392_98251789_98251957_98259875_98260071_98262185_98262364_98264681_98264825_98268508_98268673_98270590_98270746_98275670_98275925_98279334_98279613_98286465_98286727_98290698_98290876_98297011_98297112_98303950_98304059_98305679
3911	chr6	+	3170	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	44	15	31	-12	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	44	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATTCATCAAGGGCTTAT	-3	True	NA	NA	False	NA	NA	NA	29348148	29376659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
3913	chr11	-	3413	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	144	2	79	-2	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	1	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9760	False	NA	NA	False	NA	NA	NA	106679214	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
3914	chr17	-	2967	8	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	-4	intron_retention	FALSE	canonical	3	75	junction_5	773.379728258785	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCCTGATATTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	80514732	80507512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512511_80512690_80512868_80513276_80513458_80514603
3915	chr19	+	4246	19	NNC	ENSMUSG00000024900.6	novel	4317	19	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	87.2972253600053	994	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATCTGTCCCTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	3373299	3435733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412207_3414517_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
3916	chr2	+	4201	19	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	95.8447819248509	350	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCATTTGAAACCTTGTA	3598	False	NA	NA	False	NA	NA	NA	126549284	126601214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574105_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
3918	chr18	-	2995	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	204	-225	at_least_one_novel_splicesite	FALSE	canonical	3	133	junction_16	1535.60645593199	37	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	403	False	NA	NA	False	NA	NA	NA	35087206	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35086847
3919	chrX	-	4012	11	NNC	ENSMUSG00000031232.18	novel	4115	11	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_1	66.0984871233828	134	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105055439	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105014596_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
3921	chr15	+	2600	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	471.219789445857	4	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798967
3922	chr10	+	4378	26	NIC	ENSMUSG00000005682.10	novel	4445	26	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	2	23	junction_2	63.6982134757326	29	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGCTAGTGTGGGATTCT	NA	False	NA	NA	False	NA	NA	NA	128139214	128157220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128139341_128139963_128140363_128143987_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
3923	chr5	+	1844	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	-12	-3	-12	3	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	3471	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	NA	False	NA	NA	False	NA	NA	NA	143389580	143407659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
3924	chr19	+	3516	14	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-9	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	321.137788635876	1543	16	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTGTTCAGAGTTATG	128	False	NA	NA	False	NA	NA	NA	46064292	46073965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450_46073771_46073892
3925	chr5	-	4860	7	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-45	-7	intron_retention	FALSE	canonical	3	1644	junction_4	182.60742652538	129	113	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGTAGAGTTTT	2275	False	NA	NA	False	NA	NA	NA	138170125	138162851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138165897_138166102_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
3926	chr9	-	5570	14	FSM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	-4	-2	0	2	multi-exon	FALSE	canonical	3	79	junction_1	15.6049605221996	179	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTTCTGTAAAATGCT	NA	False	NA	NA	False	NA	NA	NA	62888165	62785647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_62789544_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
3927	chr2	+	3915	19	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCGGTCCACAGCGGATC	1064	False	NA	NA	False	NA	NA	NA	4995535	5017531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4996949_4997688_4997835_4998553_4998667_4999379_4999496_5000533_5000673_5001910_5002144_5003344_5003453_5003539_5003646_5004484_5004594_5005672_5005868_5006074_5006194_5008820_5008985_5009751_5009922_5011153_5012013_5012138_5012245_5013289_5013624_5015499_5015587_5017515
3928	chr6	-	3191	12	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3625.30829467026	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705255_122705339_122705658_122706099_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
3929	chr8	-	3465	18	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-7	-183	intron_retention	FALSE	canonical	0	0	junction_1	321.022350438359	7	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438306	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80410681_80411283_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
3930	chr4	+	4540	37	Antisense	novelGene_ENSMUSG00002075696.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACACGCCAGGTAGCACC	5270	False	NA	NA	False	NA	NA	NA	56751186	56802260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_56751720_56755303_56755378_56757114_56757272_56758212_56758340_56758962_56759076_56759800_56759915_56762248_56762315_56762843_56762903_56767813_56767869_56769050_56769218_56770982_56771078_56771431_56771556_56772379_56772532_56773017_56773100_56773196_56773336_56774520_56774604_56774688_56774769_56775017_56775091_56775424_56775541_56776689_56776794_56776882_56776941_56778959_56779063_56779656_56779764_56781025_56781220_56784538_56784636_56786585_56786753_56787740_56787974_56790131_56790228_56790889_56791012_56792026_56792118_56792384_56792482_56794089_56794175_56795504_56795587_56796503_56796586_56798657_56798809_56799972_56800137_56802162
3931	chr17	+	2577	7	NNC	ENSMUSG00000019432.16	novel	1711	6	NA	NA	15	933	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	837.069225864199	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGACTGTCTGTTATAG	NA	False	NA	NA	False	NA	NA	NA	35460795	35469779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35469290_35469341
3932	chr15	-	3198	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	199.638995176448	3	36	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033537	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022530_83022582_83022724_83033395
3933	chr5	-	3075	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-19	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	3	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGTCGGCGGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	135963489	135937267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938847_135939322_135940506_135963176
3935	chr6	-	3125	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	4	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8919	False	NA	NA	False	NA	NA	NA	122719475	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705485_122706074_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
3936	chr4	+	2452	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	39.3517471022571	34	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637736	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665716_147665826_147667290_147668611_147668917
3937	chr4	+	3812	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-6	-8	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	561.471875223209	87	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAATCTTGGTTTTTC	4680	False	NA	NA	False	NA	NA	NA	135583416	135597211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135594436
3938	chr17	+	3281	4	NIC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	-28	-20	intron_retention	FALSE	canonical	3	426	junction_1	1260.20430442404	203	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313345	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_37313670_37314177_37315796_37316941_37317087_37320310
3939	chr13	-	2482	15	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2842.35626240782	29	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	5131	False	NA	NA	False	NA	NA	NA	58549950	58538955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540019_58541051_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
3940	chrX	+	2239	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-15	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1640.51667470953	2	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAATGGAGACGTCATG	NA	False	NA	NA	False	NA	NA	NA	100473325	100492139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473392_100480809_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487112_100487932_100487968_100488293_100488397_100488900_100488941_100489724_100489803_100491199
3941	chr2	+	3383	19	NNC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	296.928562094747	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAGACTCCTTTGATT	7259	False	NA	NA	False	NA	NA	NA	29779862	29821756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29791194_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
3942	chr2	+	3766	21	NIC	ENSMUSG00000026790.20	novel	403	5	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	114	junction_1	275.689789437331	1	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	6621	False	NA	NA	False	NA	NA	NA	29779224	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779291_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
3944	chr11	-	4151	23	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	127	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACGCACTTCGGGATTGG	NA	False	NA	NA	False	NA	NA	NA	78213202	78192416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78192535_78192718_78192845_78194869_78195866_78195967_78196146_78203939_78204014_78204171_78204265_78204336_78204472_78204643_78204763_78204986_78205083_78205168_78205281_78205528_78205623_78205784_78205935_78206013_78206115_78206332_78206467_78206723_78206866_78210290_78210896_78211154_78211279_78211386_78211497_78211866_78211950_78212087_78212242_78212321_78212399_78212511_78212591_78212951
3946	chrX	+	4520	8	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	0	-2	intron_retention	FALSE	canonical	3	748	junction_7	39.5257601354574	6	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAGCCTGGCTCTTTAG	5948	False	NA	NA	False	NA	NA	NA	73348603	73355462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73353741_73353995_73354141_73354243_73354299_73354392
3947	chr6	-	3146	9	FSM	ENSMUSG00000053907.11	ENSMUST00000206692.2	1400	9	0	-1746	0	0	multi-exon	FALSE	canonical	3	42	junction_1	259.956697115116	1667	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	NA	False	NA	NA	NA	72416539	72409781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72411723_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
3949	chr5	-	4902	11	NNC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	53	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	124.33185432543	2	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAAAACTCTGCCTCTAG	NA	False	NA	NA	False	NA	NA	NA	74229028	74159169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74208995_74209114_74209326_74209401_74228910
3950	chr6	+	4912	24	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	2	-11	combination_of_known_junctions	FALSE	canonical	3	279	junction_1	39.2537188345773	355	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTCACACCCTTTG	1741	False	NA	NA	False	NA	NA	NA	65019606	65093034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
3951	chr11	+	1640	8	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCACTAAGTTTGAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	106672373	106676359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296_106673522_106674786_106674845_106674926_106674987_106675237_106675350_106675704_106675879_106675961_106676118_106676215
3952	chr7	-	3574	5	ISM	ENSMUSG00000007891.17	ENSMUST00000066401.7	1922	9	-51	2077	-51	-2077	5prime_fragment	FALSE	canonical	3	1999	junction_3	88.0607034948052	6	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGACCTTTTTCAGGGTC	8814	False	NA	NA	False	NA	NA	NA	141941645	141931730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
3953	chr5	+	3214	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1206.48641411979	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129873196_129873675_129873914_129874423_129874497_129874588
3954	chr9	+	5432	24	Antisense	novelGene_ENSMUSG00000099147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	134	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGCACTTACCTTCGG	16	False	NA	NA	False	NA	NA	NA	20818514	20838087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_20818858_20819166_20819256_20819765_20820051_20820387_20820579_20820984_20821166_20821434_20821602_20822711_20822857_20823030_20823315_20823478_20823604_20823866_20825388_20827019_20827237_20828592_20828765_20829199_20829333_20829403_20829616_20829729_20829847_20831135_20831281_20831399_20831501_20833316_20833496_20833588_20833778_20834061_20834218_20835000_20835093_20835320_20835438_20837740_20837848_20837923
3955	chr19	+	3608	22	NNC	ENSMUSG00000025001.12	novel	5868	22	NA	NA	42	-2054	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	399.347142959067	12	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGACAGTAAATGCGTG	NA	False	NA	NA	False	NA	NA	NA	38919400	38957441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932222_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
3956	chr18	+	3153	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-18	-12	intron_retention	FALSE	non_canonical	0	0	junction_16	162.031396814688	372	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAAGAAATCAGTGGG	9032	False	NA	NA	False	NA	NA	NA	32970345	32999441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987885_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
3957	chr5	+	4270	4	NNC	ENSMUSG00000046079.17	novel	3929	3	NA	NA	-6	0	intron_retention	FALSE	canonical	3	13	junction_1	254.10802602218	14	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4962	False	NA	NA	False	NA	NA	NA	105848725	105963076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_105848952_105862914_105863327_105880095_105880241_105959589
3958	chr19	-	3056	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	159	7	107	-7	multi-exon	FALSE	canonical	3	1448	junction_15	340.757138589935	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGAGTACTGGCTAACT	4025	False	NA	NA	False	NA	NA	NA	5345324	5323966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
3959	chr6	-	1307	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	109	185	-29	-185	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCTGTATTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	124791150	124787739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
3960	chr7	+	4085	7	NIC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	76.9518247563587	216	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	NA	False	NA	NA	NA	41248702	41277957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_41248825_41252859_41252959_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
3961	chr11	-	3163	9	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1406.97609587903	2	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676294_106677795_106677901_106679098
3962	chr11	-	3472	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_15	429.37424235741	9	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	352	False	NA	NA	False	NA	NA	NA	106615292	106545043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606191_106615208
3963	chr3	+	3459	21	NIC	ENSMUSG00000028034.16	novel	4525	22	NA	NA	-13	0	intron_retention	FALSE	canonical	1	14	junction_19	444.561683009231	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGAGTGTTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	151916096	151942463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151940160_151940208_151941104
3964	chr17	+	4681	6	FSM	ENSMUSG00000061544.14	ENSMUST00000182827.8	640	6	-133	-3908	-133	0	multi-exon	FALSE	canonical	3	170	junction_1	15.5254629560603	361	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGGACTTGTATCATAGT	NA	False	NA	NA	False	NA	NA	NA	21949642	21967950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
3965	chr9	+	4315	7	NNC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	0	2539	intron_retention	FALSE	non_canonical	0	0	junction_1	1119.4756212918	131	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACAAGCTTATATT	9569	False	NA	NA	False	NA	NA	NA	64188888	64215245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64188930_64195387_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64208323_64208531_64211588
3966	chr7	-	3722	21	NNC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	44	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	331.642409079418	74	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTCTGGTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	28661721	28592678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604754_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
3967	chr16	+	2798	21	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	700.757697067967	7	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470450	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481440_20481875
3968	chr16	+	4174	32	NNC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_31	132.959062808574	105	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTCATGTACGTGTGT	NA	False	NA	NA	False	NA	NA	NA	29398209	29470688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29469476_29470328_29470571
3969	chr8	+	5374	6	NIC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	2	3	intron_retention	FALSE	canonical	3	424	junction_1	52.3335456471277	29	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	43633579	43646921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_43633650_43636158_43636403_43636739_43638496_43640607_43643129_43643305_43643407_43646239
3970	chrX	+	6062	39	NIC	ENSMUSG00000031314.19	novel	5954	39	NA	NA	57	-10	combination_of_known_junctions	FALSE	canonical	3	37	junction_38	62.2286742164482	21	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAATAGAATCGAGAGTGA	4172	False	NA	NA	False	NA	NA	NA	100576421	100644630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584365_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914_100642980_100644098
3971	chrX	-	2672	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3726	-503	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	413.376474143123	1	33	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGAAATTCACCAACACT	NA	False	NA	NA	False	NA	NA	NA	23185144	23086027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086114_23086249_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
3972	chr14	+	3652	23	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-4	-6	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	116.114968675073	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGCCCTGCTGGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	32043971	32070102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_32044074_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
3973	chr5	-	3303	18	NNC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_12	334.504208858341	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTAAGCTGTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	149559752	149540315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553356_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
3974	chr2	+	3277	15	NIC	ENSMUSG00000027067.17	novel	2721	17	NA	NA	-9	-1	intron_retention	FALSE	canonical	3	1260	junction_5	133.25870573085	160	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGATGTCCTTATGTCT	NA	False	NA	NA	False	NA	NA	NA	84867785	84877449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84868314_84868696_84868883_84870217_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
3975	chr9	+	4237	18	NNC	ENSMUSG00000032193.10	novel	4627	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	82.2472851646485	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCATCCTTATGTGTG	1929	False	NA	NA	False	NA	NA	NA	21634934	21661215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21635141_21643042_21643166_21643607_21643694_21644983_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
3976	chr10	-	4529	31	NNC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-6	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	33.7969262244693	265	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTACTTTGTGCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	79938538	79892836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896751_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
3977	chr16	-	2899	2	ISM	ENSMUSG00000022538.21	ENSMUST00000129004.2	628	3	-35	666	0	-666	5prime_fragment	FALSE	canonical	3	588	junction_1	0	15	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAGCCAGGGCTATACA	NA	False	NA	NA	False	NA	NA	NA	30406392	30401736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_30404499_30406255
3979	chr6	-	3568	14	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	-3	0	intron_retention	FALSE	canonical	2	729	junction_6	687.312474693878	1786	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	NA	False	NA	NA	NA	88875662	88860455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88865248_88865991_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
3981	chr14	+	4240	39	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	3	354	junction_31	131.105569523613	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886783	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
3982	chr8	-	3816	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21245	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.13938165239	80	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	81585880	81491062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81491223_81491374_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
3983	chr7	-	2035	8	NIC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	1941	junction_3	103.573103434734	28	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTCTATTGGTGTGCTCT	8863	False	NA	NA	False	NA	NA	NA	141941596	141929654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
3984	chr15	-	4435	37	NNC	ENSMUSG00000034022.9	novel	4410	37	NA	NA	-20	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	132.082638156834	1	76	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	76491731	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480108_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482171_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
3985	chr6	-	1030	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	20	8	-3	-8	multi-exon	FALSE	canonical	3	260	junction_1	18.8738502225228	2974	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTGGAGACAGTTTT	NA	False	NA	NA	False	NA	NA	NA	135145193	135114527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
3987	chr11	-	1303	6	NNC	ENSMUSG00000015837.16	novel	2037	8	NA	NA	-193	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	378.767158027197	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTAACCAGCCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	50098339	50090988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50091361_50091500_50091775_50093225_50093422_50093640_50093854_50097986_50098129_50098233
3988	chr12	+	6098	20	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-15	122	intron_retention	FALSE	canonical	3	11	junction_7	177.625146082348	10	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTAATTTTTTTGGTG	4005	False	NA	NA	False	NA	NA	NA	83679049	83728916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83698419_83698525_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
3989	chr11	+	3727	6	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	83	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAAATGAATGAGGTGCC	NA	False	NA	NA	False	NA	NA	NA	106672469	106679303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106675350_106675704_106675879_106675961_106676118_106676215_106676357_106677729_106677899_106679096
3990	chrX	+	3252	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	80	-727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	243.372945283299	2	35	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	NA	False	NA	NA	NA	150799503	150844963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809403_150811127_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842501_150842623_150842776_150843971_150844042_150844288_150844400_150844721
3991	chr12	+	3162	27	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	22	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	280.350216841079	21	21	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACCTTGGTGTTGAAACA	7933	False	NA	NA	False	NA	NA	NA	76302093	76366573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350745_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
3993	chr1	-	4345	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	5	-642	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	155.65807881379	489	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATGTCGGTCTGCCCTGC	8596	False	NA	NA	False	NA	NA	NA	88205350	88190834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88198877_88198992_88200450_88200488_88202763_88202820_88204940_88205008_88205095
3996	chr14	+	3789	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	115	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	99.1548662446781	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGGTTTCTTTGTGTA	9745	False	NA	NA	False	NA	NA	NA	47535840	47560549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47557511_47558145
3997	chr2	+	4151	5	NNC	ENSMUSG00000027162.8	novel	4228	5	NA	NA	-3	-15	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	168.339500712103	1	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTCTTCTGTTATTTCA	NA	False	NA	NA	False	NA	NA	NA	109721194	109731333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726726_109727590
3998	chr6	-	4070	28	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	352	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	172.20251579808	1	90	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGACTTTTAAGCATCCT	8853	False	NA	NA	False	NA	NA	NA	125163206	125144982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148715_125148795_125148911_125149952_125150117_125150328_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062
3999	chr11	+	6064	4	FSM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	96	0	96	0	multi-exon	TRUE	canonical	3	267	junction_2	46.1976430375211	441	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTAGCACGACGTTATT	NA	False	NA	NA	False	NA	NA	NA	109253752	109292195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_109254083_109256361_109256589_109283171_109283223_109286739
4000	chr4	-	4330	9	Intergenic	novelGene_2133	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	140	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAAGATGAAACCGC	NA	False	NA	NA	False	NA	NA	NA	147671110	147216507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147216643_147217299_147217437_147447266_147447362_147533654_147533784_147536168_147536305_147661430_147661585_147665696_147665825_147667289_147667438_147667842
4001	chr11	-	1746	3	ISM	ENSMUSG00000000384.16	ENSMUST00000150697.8	2241	12	-24	6281	0	494	5prime_fragment	FALSE	canonical	3	504	junction_2	34	85	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCCCATAAAATAAACTTAA	NA	False	NA	NA	False	NA	NA	NA	6576067	6572705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_6574284_6575148_6575214_6575964
4002	chr11	-	3957	9	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-1200	-9	intron_retention	FALSE	canonical	3	46	junction_8	169.966173105121	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCACCACATGGGCCAC	NA	False	NA	NA	False	NA	NA	NA	6572451	6565607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741
4003	chr19	+	4644	23	NNC	ENSMUSG00000012443.5	novel	4819	22	NA	NA	-15	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	79.4398909930756	24	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGTGCTGCCTGTACATT	NA	False	NA	NA	False	NA	NA	NA	37364835	37410308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706_37409796_37409986
4004	chr2	+	3791	6	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	38	-67	intron_retention	FALSE	canonical	3	1115	junction_3	98.7230469545992	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTTTGCTCTGTAATGC	8701	False	NA	NA	False	NA	NA	NA	72306634	72317170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72314361_72314942_72315093_72315519
4005	chr10	+	4052	12	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	47	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCCAGTAAATCTGTCT	NA	False	NA	NA	False	NA	NA	NA	62648830	62728732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649190_62649300_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62728471
4006	chr19	+	4770	9	NIC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	0	-2	intron_retention	FALSE	canonical	3	96	junction_2	90.5033666500866	29	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACTGTGTCTAGTATGT	NA	False	NA	NA	False	NA	NA	NA	38043484	38062867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
4008	chr6	+	5461	43	FSM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-8	-746	-8	2	multi-exon	FALSE	canonical	3	81	junction_38	50.0643576738687	239	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTGTTGGTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	113508656	113573980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
4010	chr9	+	4274	26	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	179.357894724487	1	85	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTATAGGTTGTATGTGTT	NA	False	NA	NA	False	NA	NA	NA	44290855	44303652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296201_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
4011	chr16	+	4237	11	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	189.608966032727	408	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTTTTTTGGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	84631812	84660663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262_84659439_84659863
4012	chr7	-	3383	27	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	-33	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	213.792664173582	26	34	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGTGTACGAAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	28038204	28014319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021967_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
4014	chr17	+	4056	10	Antisense	novelGene_ENSMUSG00000024081.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCAGCCCGGAGCTTAC	NA	False	NA	NA	False	NA	NA	NA	79229124	79244475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_79230001_79230664_79230771_79231880_79231945_79233345_79233412_79233511_79233622_79234303_79234352_79236706_79236793_79238735_79239773_79242005_79243499_79244305
4015	chr15	+	5420	24	NNC	ENSMUSG00000022272.18	novel	618	2	NA	NA	-1428	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	210.444214664652	2	62	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGCTTTCCTTGAGT	1601	False	NA	NA	False	NA	NA	NA	25751567	25813757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_25751717_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781266_25781703_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
4016	chr2	+	4341	33	NNC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-29	-1	intron_retention	FALSE	canonical	3	18	junction_32	60.0463362745805	464	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	NA	False	NA	NA	False	NA	NA	NA	180961502	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997690
4017	chr7	-	3479	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_17	279.491264378523	812	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198224	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189873_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
4018	chr4	-	4104	21	Antisense	novelGene_ENSMUSG00000028397.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	42	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGAGGTGGGCGGGAGGC	NA	False	NA	NA	False	NA	NA	NA	74324093	74170145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_74170320_74181041_74181205_74189428_74189607_74216677_74216871_74225200_74225250_74229881_74229986_74233746_74233886_74248890_74249084_74251867_74252105_74252784_74253104_74255116_74255225_74261603_74261787_74263677_74263894_74266636_74266714_74275578_74275635_74277656_74277765_74291801_74291987_74295864_74296036_74309611_74309732_74317581_74317677_74323057
4019	chr9	+	5670	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	27	11	0	-11	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	400	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTACCTGCTTTAGACTC	NA	False	NA	NA	False	NA	NA	NA	57615849	57659771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
4020	chr2	+	4885	16	NNC	ENSMUSG00000036617.18	novel	407	3	NA	NA	-41470	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	59.0869039823735	3	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	4782	False	NA	NA	False	NA	NA	NA	20676651	20815335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_20676717_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
4021	chr11	-	1174	2	Antisense	novelGene_ENSMUSG00000020869.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	34	junction_1	0	11	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAACTTAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	94534525	94533230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_94534344_94534464
4023	chr17	+	3163	4	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	1458.01973771124	245	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	37313445	37321524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313632_37314177_37315796_37316941_37317087_37320310
4025	chr18	+	3693	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	28	12	0	-12	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	12	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCAAGTCTAAGAAGCA	NA	False	NA	NA	False	NA	NA	NA	35251939	35387820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
4026	chr15	-	5613	32	NNC	ENSMUSG00000022443.18	novel	7433	41	NA	NA	33	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	85.0811328529059	312	44	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGGTGTCTGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	77726342	77644787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77645957_77653096_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
4027	chr8	+	5084	4	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	12	-5	intron_retention	FALSE	canonical	3	5	junction_1	24.9443825784929	197	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAACCTGCTGGCTCCCTT	NA	False	NA	NA	False	NA	NA	NA	22550767	22561638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22550947_22551901_22552133_22555015_22555948_22557896
4028	chr13	-	2099	11	Antisense	novelGene_ENSMUSG00000113894.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTCGGGGGGAAAGGGAAA	NA	False	NA	NA	False	NA	NA	NA	3615821	3588218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3588338_3598856_3598971_3600988_3601088_3604410_3604547_3606313_3606513_3606925_3607056_3609989_3610090_3611863_3612036_3614537_3614685_3614858_3614910_3614989
4031	chr6	-	3115	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	33	24	31	-24	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	1687	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9128	False	NA	NA	False	NA	NA	NA	88495854	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
4032	chr10	+	1641	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	238	1231	0	148	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGATTGAACTGCACAACC	1621	False	NA	NA	False	NA	NA	NA	79690498	79699035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
4034	chr9	-	6227	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	8	-18	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	36.0262250157977	198	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCCTCTGACATCTAT	NA	False	NA	NA	False	NA	NA	NA	122695042	122677992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691410_122694978
4035	chr4	-	4200	7	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	633.480180344175	817	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000074	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134966934_134967067_134999828
4037	chr3	+	3497	16	NIC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	-1	300	intron_retention	FALSE	canonical	3	754	junction_14	169.31149465474	2136	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATGAAGGATAATTCAC	4855	False	NA	NA	False	NA	NA	NA	34074252	34124771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
4038	chr12	+	3375	6	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	264.780210740909	48	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTTCATGCGTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561297_86566099
4040	chr15	-	3042	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	0	2	0	1	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	139	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAGTGAGTCTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	38300950	38294658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
4041	chr15	-	3859	15	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	134	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGAGCTGTCGCGAAAC	3560	False	NA	NA	False	NA	NA	NA	102005573	101982166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982399_101990411_101990548_101992594_101992805_101993113_101993229_101994435_101994491_101994937_101995075_101997050_101997187_101997289_101997469_101998303_101998528_101999829_101999928_102001418_102001633_102002090_102002147_102003104_102003211_102003409_102003483_102003685
4042	chr14	-	2465	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	440	5	at_least_one_novel_splicesite	FALSE	canonical	2	65	junction_8	1773.32554822853	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGCTGTACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	36856656	36842775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856594
4043	chr2	+	2869	17	NNC	ENSMUSG00000027067.17	novel	2721	17	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	398.410415746125	138	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867805	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84868031_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
4044	chrX	+	2495	14	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	286	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	853.99605059852	4	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	-4	True	NA	NA	NA	74140437	74153381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146161_74147928_74148067_74149259_74149379_74149883_74149929_74150759_74150857_74151784_74151911_74152301
4045	chr14	+	4579	23	NNC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	6	-7	intron_retention	FALSE	canonical	0	0	junction_5	110.336899562017	1	69	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCAGTATCCCTCTCATT	NA	False	NA	NA	False	NA	NA	NA	20724396	20744911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733535_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
4046	chr7	-	3280	27	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	250.815946568902	5	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGTGTGTGTACGAAG	NA	False	NA	NA	False	NA	NA	NA	28038184	28014324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28016208_28016315_28016410_28016539_28016640_28016744_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
4047	chr12	+	4063	14	Antisense	novelGene_ENSMUSG00000047534.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	371	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGTGCCTGCGATTGGCCC	NA	False	NA	NA	False	NA	NA	NA	65179507	65219400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_65180402_65180579_65180631_65183521_65183626_65185420_65185571_65187506_65187663_65189994_65190167_65195495_65196325_65199461_65199604_65200578_65200667_65201491_65201624_65203765_65203839_65205167_65205636_65208176_65208805_65219224
4048	chr19	-	3391	19	NNC	ENSMUSG00000025007.14	novel	3427	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	282.123150808689	935	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576828	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562255_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
4049	chr4	+	2544	9	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.330718913883074	25	28	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTCTGTGGAATAAAGC	NA	False	NA	NA	False	NA	NA	NA	135047799	135065383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054532_135056683_135056831_135059034_135059122_135059471_135059550_135065114
4051	chr17	-	3135	5	ISM	ENSMUSG00000024083.17	ENSMUST00000024888.15	4531	9	19900	40	19900	-26	3prime_fragment	FALSE	canonical	3	131	junction_1	18.6681547025945	4	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAACAATAAACAGGATAT	2007	False	NA	NA	False	NA	NA	NA	64600126	64588040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833
4052	chr5	-	5534	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	32	-1331	-27	1331	multi-exon	FALSE	canonical	3	140	junction_1	30.3840007240653	296	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAAAGCTGCTATGAA	9999	False	NA	NA	False	NA	NA	NA	123711069	123665390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
4053	chr1	-	4883	28	NIC	ENSMUSG00000042699.12	novel	4616	28	NA	NA	0	-5	intron_retention	FALSE	canonical	3	8	junction_22	45.9346765856858	633	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGATTGTGTCATTGAT	NA	False	NA	NA	False	NA	NA	NA	153363397	153331508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153352169_153352309_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
4054	chr7	-	4354	14	NNC	ENSMUSG00000043262.17	novel	4616	12	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.1260480941677	176	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTGCTGTCTGATTAAG	NA	False	NA	NA	False	NA	NA	NA	46608233	46572963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46573513_46573550_46574092_46574273_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
4055	chr1	+	4553	24	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	143	junction_12	31.0798106715592	298	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTAGACCCACTTTGT	NA	False	NA	NA	False	NA	NA	NA	128031060	128165465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
4056	chr2	+	3890	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	0	6	0	-6	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	559	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATGCAAGGGTGCGGA	NA	False	NA	NA	False	NA	NA	NA	153003222	153052380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
4057	chr15	-	3064	11	NIC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-52	-2	intron_retention	FALSE	canonical	3	2366	junction_3	115.590484037398	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTTGACCTTCCCCCAT	NA	False	NA	NA	False	NA	NA	NA	81283847	81247871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
4058	chr2	-	3282	21	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	231.390638315382	2	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017541	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4997783_4998549_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005720_5005822_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
4059	chr6	+	4222	24	NIC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_20	89.841343037126	79	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	83891358	83963853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83958665_83958768_83960957_83961057_83961758_83961878_83963539
4060	chrX	-	3729	9	NNC	ENSMUSG00000031232.18	novel	4524	10	NA	NA	14813	-645	intron_retention	FALSE	non_canonical	0	0	junction_3	76.4778358415038	88	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAACAAAAAACAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105040573	105012334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105015086_105017790_105017882_105023011_105023087_105027203_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427
4061	chr2	+	3491	22	NIC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	43	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	140.17216495319	57	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428734	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
4062	chr9	-	3569	18	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	9	936	at_least_one_novel_splicesite	FALSE	canonical	2	121	junction_7	406.863485943101	25	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAGAACTACTGCCTAG	NA	False	NA	NA	False	NA	NA	NA	36678886	36642785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655385_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
4064	chr5	-	4106	13	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	80	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCGAAGGAACCCCAACAA	NA	False	NA	NA	False	NA	NA	NA	33829537	33815972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816070_33818684_33818728_33818861_33818989_33821164_33821245_33821608_33822309_33822511_33824510_33825304_33825396_33825475_33825579_33826004_33826082_33826160_33826205_33826820_33826990_33828745_33828855_33829069
4065	chr15	+	4514	9	ISM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	-18	-43	-18	0	intron_retention	FALSE	canonical	3	528	junction_1	52.4200283765661	18	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7119	False	NA	NA	False	NA	NA	NA	85743927	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840
4066	chr18	+	3042	25	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	24	-8	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	238.987563600191	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTAGGTGGCTTTTG	9016	False	NA	NA	False	NA	NA	NA	32970329	32999465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32977430_32977521_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
4067	chr2	+	1647	14	NNC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	343.489076335959	5	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCACTATGTCAGACTCCT	7225	False	NA	NA	False	NA	NA	NA	29779828	29821750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29821673
4068	chr11	-	3675	6	NNC	ENSMUSG00000038615.18	novel	4654	5	NA	NA	96	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	504.843975897504	4	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96720685	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96708642_96709494_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
4069	chr9	+	3059	13	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	48	10	48	-10	intron_retention	FALSE	canonical	3	518	junction_4	136.218242986107	204	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATTGCCTCTTAGGTT	5560	False	NA	NA	False	NA	NA	NA	35122498	35128300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010
4071	chr2	+	2727	18	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-15	1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	760.951812468867	3363	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157120963	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157123863_157124082_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
4072	chr19	-	5014	11	NIC	ENSMUSG00000025154.16	novel	5103	12	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_9	112.434380862795	295	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGGTTCTGACTGGTC	4535	False	NA	NA	False	NA	NA	NA	41790478	41755026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41780185_41780452_41790410
4073	chr8	-	4308	24	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	149.167253662516	588	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTACAAAGCTGGCATGTG	8135	False	NA	NA	False	NA	NA	NA	120285480	120234898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120263891_120264003_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
4075	chr14	+	4769	4	Antisense	novelGene_ENSMUSG00000077797.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	77	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGACTTCTCGGGCGC	1516	False	NA	NA	False	NA	NA	NA	30734395	30740939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30738864_30739012_30739127_30739234_30739371_30740888
4076	chr8	-	3612	19	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-3	-185	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_16	407.303675346316	2	98	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGAGCTTACCGGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438282	80410275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80432124_80432216_80433862_80433949_80435051_80435182_80438171
4077	chrX	+	6070	39	NIC	ENSMUSG00000031314.19	novel	7210	38	NA	NA	-9	-5	combination_of_known_junctions	FALSE	canonical	3	37	junction_38	66.613637727585	18	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAATCGAGAGTGATTTTA	4106	False	NA	NA	False	NA	NA	NA	100576355	100644635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100576608_100577100_100577216_100577350_100577468_100582673_100582794_100584428_100584608_100586069_100586289_100586656_100586876_100587553_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100600780_100600957_100603371_100603551_100605679_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914_100642980_100644098
4079	chr4	-	4274	11	FSM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	98	6	-3	-2	multi-exon	FALSE	canonical	3	431	junction_10	137.634443363571	567	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAACGGACTGTGTTTGT	6772	False	NA	NA	False	NA	NA	NA	126096455	126057880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
4080	chr11	-	3583	19	NNC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	0	542	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.614869454018	679	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGCGGTGGTGGTACAT	1130	False	NA	NA	False	NA	NA	NA	107080178	107056946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107058231_107058318_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
4082	chr11	+	3500	22	Antisense	novelGene_ENSMUSG00000104854.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	80	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCAGCAGCCGGGGATC	NA	False	NA	NA	False	NA	NA	NA	100367181	100418695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100368164_100368839_100368917_100369152_100369237_100370009_100370119_100372197_100372349_100372522_100372672_100372968_100373125_100374533_100374627_100375423_100375552_100383328_100383442_100384362_100384447_100384711_100384913_100386690_100386794_100389013_100389180_100389446_100389592_100395030_100395124_100395683_100395835_100403700_100403819_100405100_100405163_100405786_100405848_100414247_100414452_100418625
4083	chr7	-	4735	33	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	41	junction_22	30.5222607032556	243	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	NA	False	NA	NA	NA	29979846	29939562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
4084	chr16	+	3807	9	NIC	ENSMUSG00000022800.15	novel	4312	9	NA	NA	3	-449	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	204.961543649047	1504	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGTAGTTTTGTGGTATT	NA	False	NA	NA	False	NA	NA	NA	32698179	32728796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718770_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
4085	chr10	-	1612	14	Antisense	novelGene_ENSMUSG00000025410.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	238	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCCCCAGCAAAGGCGAC	3462	False	NA	NA	False	NA	NA	NA	127117675	127102287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127102404_127103282_127103351_127110581_127110678_127110860_127110924_127111691_127111790_127112250_127112416_127112570_127112719_127113123_127113187_127113352_127113393_127113560_127113636_127113729_127113805_127113985_127114091_127114183_127114276_127117267
4086	chr6	+	4002	28	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	3	0	intron_retention	FALSE	canonical	2	4	junction_25	71.7899886414241	2	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	NA	False	NA	NA	NA	116185085	116239626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116235602_116236218_116237451_116237630_116239295
4087	chrX	+	4327	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	89	1	-5	-1	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	368	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTTGATGTCTATACT	NA	False	NA	NA	False	NA	NA	NA	20230808	20267091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
4088	chr8	+	4742	29	FSM	ENSMUSG00000036270.17	ENSMUST00000040254.16	4780	29	38	0	-32	0	multi-exon	FALSE	canonical	3	268	junction_16	54.5128121057194	277	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCTTTGATGTGACTA	3294	False	NA	NA	False	NA	NA	NA	106607550	106619857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
4089	chr6	-	4090	17	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	1	-9	intron_retention	FALSE	canonical	3	759	junction_13	52.3655644842104	3	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATGTGAATAAAAGTACG	7906	False	NA	NA	False	NA	NA	NA	124806397	124792009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
4090	chr17	+	2837	4	Intergenic	novelGene_26	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	65.7926034343274	7	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGTATGCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	17225398	17261817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225489_17257537_17257665_17257906_17257968_17259258
4091	chr10	+	4860	28	FSM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	106	9	105	-9	multi-exon	FALSE	canonical	3	154	junction_10	22.7726281441689	229	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACGGTACTCAGTCTGAG	NA	False	NA	NA	False	NA	NA	NA	84458261	84563033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
4092	chr5	-	3195	8	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-15	0	intron_retention	FALSE	canonical	3	230	junction_1	297.206243239284	58	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
4095	chr17	-	3797	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	-70	4	-17	-2	multi-exon	FALSE	canonical	3	426	junction_6	74.0811964579343	981	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACATTTGTGTTCATTAA	NA	False	NA	NA	False	NA	NA	NA	32540229	32522649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
4096	chr3	-	6302	20	NIC	ENSMUSG00000015697.15	novel	4622	22	NA	NA	-17	-245	intron_retention	FALSE	canonical	3	141	junction_9	32.0376336875739	52	160	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTAAAGTAGAGATTGTGG	1671	False	NA	NA	False	NA	NA	NA	95264484	95231080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
4097	chr17	+	4123	3	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-16	348	intron_retention	FALSE	canonical	3	5304	junction_1	1963	412	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTTTGTGTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	6869174	6875296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_6869236_6870885_6874551_6874899
4098	chr12	+	4140	6	NIC	ENSMUSG00000020605.10	novel	2959	7	NA	NA	45	-11	intron_retention	FALSE	canonical	3	118	junction_1	13.0690474021636	7	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCAGAATTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	8363476	8393813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8387769_8391831
4099	chr3	+	1552	7	ISM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	-10	28795	-10	-1369	5prime_fragment	FALSE	canonical	3	512	junction_1	40.2437020607642	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGGCTCAGTGAATAAAGA	NA	False	NA	-75	True	NA	NA	NA	51323426	51354611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067
4101	chr10	-	5229	14	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	-15	3	intron_retention	FALSE	non_canonical	0	0	junction_2	240.904508568272	1	151	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTTGGTGGCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	62438075	62416026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418387_62418832_62418878_62420421_62420545_62421303_62421464_62423242_62423317_62423782_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428820_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
4102	chr8	-	3043	18	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.631696466078	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86026145	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987296_85987440_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
4103	chr11	+	4119	23	NNC	ENSMUSG00000017119.21	novel	4339	23	NA	NA	1088	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	72.5923748926978	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAAGCTGTTTATTGTT	2109	False	NA	NA	False	NA	NA	NA	101444814	101472774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101444925_101446635_101446702_101447010_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101465942_101466049_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
4104	chrX	-	3977	3	NIC	ENSMUSG00000061273.4	novel	4234	4	NA	NA	150	-3	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	65	39	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACCTTGTGTTTGGTAG	NA	False	NA	NA	False	NA	NA	NA	55643279	55630874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_55634664_55640749_55640803_55643144
4105	chr11	+	5491	17	NIC	ENSMUSG00000020705.7	novel	4011	18	NA	NA	22	-3	intron_retention	FALSE	canonical	2	294	junction_3	63.6763974620895	288	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATCTCTTTTATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	106107773	106139962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
4107	chrX	+	2384	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1090.72251434807	71	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473290	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483270_100485152_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
4108	chr3	-	1911	14	Antisense	novelGene_ENSMUSG00000001416.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.52997903518014	355	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTGGAGAGAAGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	88229074	88204491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88204574_88206648_88206709_88208104_88208156_88208233_88208297_88210072_88210171_88212318_88212435_88216464_88216653_88218977_88219128_88220546_88220677_88220857_88220941_88225645_88225833_88227765_88228007_88228314_88228451_88228748
4110	chr18	-	2804	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	-249	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	1567.35186575757	3	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAAGCCTCTTGATCTCC	NA	False	NA	NA	False	NA	NA	NA	35087659	35070700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085797_35087490
4111	chr11	+	3339	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	0	-8	intron_retention	FALSE	canonical	0	0	junction_10	213.920414821847	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAACTGGCTTGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	74788896	74800160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796094_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
4112	chr2	+	4099	12	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	689	-1844	689	-7	3prime_fragment	FALSE	canonical	3	31	junction_9	8.18888583628258	13	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTAAATAATGTCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	121341017	121375334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781
4113	chr11	-	5385	14	NIC	ENSMUSG00000020173.18	novel	5615	15	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	235	junction_6	74.428711772371	326	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTGTGGACTTCATGC	NA	False	NA	NA	False	NA	NA	NA	12414898	12186675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
4114	chr4	+	2494	5	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078496.10	novel	1488	4	NA	NA	4876	2572	multi-exon	TRUE	non_canonical	0	0	junction_1	197.886804764744	3	70	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147395006	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147395147_147413483_147413566_147596801_147597378_147598717_147599761_147599862
4115	chr5	-	4282	26	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_24	73.7455517302569	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGCTTGTAAAGCAC	NA	False	NA	NA	False	NA	NA	NA	108777609	108717279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108772895_108772958_108777366
4116	chr11	+	3313	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-4	-2	intron_retention	FALSE	canonical	0	0	junction_14	210.110041625422	1073	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788919	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798939_74799103
4117	chrX	+	5351	29	NNC	ENSMUSG00000031314.19	novel	7210	38	NA	NA	11293	-13	intron_retention	FALSE	canonical	0	0	junction_13	69.9581781043036	1	27	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGCAATAGAATCGAGAG	2207	False	NA	NA	False	NA	NA	NA	100587657	100644627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100587762_100590564_100590742_100591538_100591667_100591765_100591874_100591968_100592143_100592680_100592855_100593308_100593414_100595954_100596156_100596295_100596438_100596771_100596903_100598208_100598290_100600127_100600278_100600429_100600550_100605829_100605894_100606419_100606586_100607133_100607346_100611022_100611132_100612064_100612164_100613400_100613579_100618990_100619059_100620186_100620310_100621805_100621899_100621977_100622063_100633553_100633622_100634078_100634196_100637545_100637672_100638905_100639063_100639693_100639872_100642914
4119	chr11	-	3756	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	2	0	2	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	1270	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88755410	88721617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
4120	chr6	+	781	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	32	1	0	-1	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	3513	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGGTTTTTGTTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	146544076	146552099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
4121	chr10	+	2874	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	45	3	-42	-3	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGTCATATTTTGATTA	NA	False	NA	NA	False	NA	NA	NA	41395454	41407041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
4122	chr9	+	4153	24	FSM	ENSMUSG00000032267.9	ENSMUST00000213874.2	4109	24	-50	6	-11	-6	multi-exon	FALSE	canonical	3	58	junction_12	166.491369690667	409	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTGGTATGTAGCATGA	NA	False	NA	NA	False	NA	NA	NA	48896663	48953804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935280_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
4124	chr11	-	3137	25	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	980.313596898405	23	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100367463_100372557_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
4125	chr3	+	4250	9	FSM	ENSMUSG00000027804.14	ENSMUST00000161460.8	3777	9	37	-510	14	136	multi-exon	FALSE	canonical	3	2177	junction_4	229.457478359281	91	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAAATGCTCTCGTTTA	NA	False	NA	NA	False	NA	NA	NA	79498685	79511093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
4126	chr2	+	2569	18	NIC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-4	-1880	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	195.300513715247	1	24	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTGGAAGGTA	7218	False	NA	NA	False	NA	NA	NA	23046525	23087392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
4128	chr11	+	3159	27	Antisense	novelGene_ENSMUSG00000020929.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.192307692307692	3	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGACAACGCCGGCGCCCGG	NA	False	NA	NA	False	NA	NA	NA	102729310	102771782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102729725_102729977_102730084_102730245_102730399_102730848_102730947_102731090_102731209_102731995_102732078_102732220_102732354_102732507_102732594_102734174_102734257_102734963_102735067_102737408_102737519_102738779_102738977_102740008_102740137_102742581_102742721_102745606_102745695_102746048_102746109_102750822_102750953_102753436_102753602_102755531_102755615_102756393_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762008_102768434_102768545_102771720
4129	chr5	+	3476	2	NIC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-1875	-2	intron_retention	FALSE	canonical	3	2294	junction_1	0	5	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATCTTTCATTTATTCA	NA	False	NA	NA	False	NA	NA	NA	34506584	34510778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34507416_34508133
4130	chr8	-	2932	19	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	9	-183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.311849531882	222	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438290	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80410681_80411279_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
4131	chr7	+	3177	5	NNC	ENSMUSG00000006599.14	novel	673	5	NA	NA	0	2715	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	271.523940012663	4	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTCAGGGTCACCTAA	4717	False	NA	NA	False	NA	NA	NA	46445537	46457166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46455505_46455646
4132	chr15	+	2743	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	358	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
4133	chr11	+	4721	9	NIC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	21	-34	intron_retention	FALSE	canonical	3	2673	junction_3	117.538756905967	9	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	107370330	107388965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107385631_107386513
4135	chr17	+	3483	18	FSM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	-38	5	-38	-5	multi-exon	FALSE	canonical	3	1341	junction_7	117.232918130641	1613	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCGCGTGTCTCGTGGT	NA	False	NA	NA	False	NA	NA	NA	71923171	71966021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
4136	chr19	-	2899	19	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	532.730333306347	16	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3899	False	NA	NA	False	NA	NA	NA	5345450	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343195_5345301
4138	chr8	+	4672	11	NIC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	3	-1	intron_retention	FALSE	canonical	3	57	junction_2	21.0049994049036	6	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATAGTCCAGTCTTAGC	NA	False	NA	NA	False	NA	NA	NA	75720309	75758599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75750796_75756115_75756239_75756616
4139	chr17	+	3880	11	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-33	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	49.703118614429	34	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTCCTGCAGTGAAT	9357	False	NA	NA	False	NA	NA	NA	36152534	36170560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36163556_36169819
4141	chrX	-	2784	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-14	-10	intron_retention	FALSE	canonical	0	0	junction_1	415.306080494697	24	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921423	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906427_158906494_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
4142	chr6	-	3341	5	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	-19	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	333.387443524797	13	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAACATGTTAGCAACAT	4218	False	NA	NA	False	NA	NA	NA	35516753	35486000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35487307_35487695_35489253_35498834_35498919_35499616_35499731_35516473
4143	chr3	+	4839	8	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	0	669	intron_retention	FALSE	canonical	3	940	junction_3	46.379534543695	4	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCAGAGCTGTTACTTAT	NA	False	NA	NA	False	NA	NA	NA	105866823	105875512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105871829_105871938_105871994_105872396_105872469_105873080_105873742_105874478
4144	chr13	-	4990	31	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	96	2	combination_of_known_junctions	TRUE	canonical	3	58	junction_30	28.2737609022138	177	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGCTATGTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	74956833	74840484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74956554
4146	chr15	+	3438	18	NIC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	0	-7	intron_retention	FALSE	canonical	3	800	junction_1	77.6423795381493	2226	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGGGAGGCTGTTGATCC	NA	False	NA	NA	False	NA	NA	NA	89239965	89257022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
4147	chr10	-	3086	9	NNC	ENSMUSG00000075232.7	novel	3204	8	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.977986116179	12	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGAGAAAGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	40178182	40163461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40164788_40164897_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
4148	chr6	+	3976	5	Genic_Genomic	ENSMUSG00000108591.2	novel	1560	1	NA	NA	-6251	-1054	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCGGCGGGCGAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	72409782	72416539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_72413011_72413177_72413513_72413976_72414101_72414353_72414432_72416328
4149	chr18	+	3043	17	NNC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	3879	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	440.124343225866	72	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGACTTCTTGTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	35686462	35724640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690476_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
4150	SIRV6	-	273	1	FSM	SIRV6B	SIRV617	276	1	-1	4	-1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5327	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAAGAGTCTACTTGGGC	NA	False	NA	NA	False	NA	NA	NA	1821	1548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_-_1500_1800
4151	chr10	-	3098	2	Genic_Genomic	ENSMUSG00000063953.4	novel	3218	1	NA	NA	0	-22	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTAGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35587888	35584692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_35586893_35586990
4152	chr13	-	1527	7	ISM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	41	11443	0	3785	5prime_fragment	FALSE	canonical	3	1612	junction_3	93.732628020106	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTAAAAAACTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	74498358	74481815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
4153	chr8	+	1864	10	ISM	ENSMUSG00000018796.14	ENSMUST00000034046.13	3897	21	18	16279	0	3141	5prime_fragment	FALSE	canonical	3	339	junction_9	30.3754286663854	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCAGGCTGCTGGGTCAG	2224	False	NA	NA	False	NA	NA	NA	46924091	46972809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997
4154	chr1	+	3443	13	NNC	ENSMUSG00000026276.21	novel	418	2	NA	NA	-506	-527	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	276.37831358886	167	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406179	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406476_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
4155	chr1	+	4983	7	NIC	ENSMUSG00000026283.14	novel	4533	8	NA	NA	7	-1	intron_retention	FALSE	canonical	0	0	junction_3	79.068886984002	20	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAACATTTGAAAGTAG	NA	False	NA	NA	False	NA	NA	NA	93731693	93749816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93731762_93733769_93733842_93739503_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
4157	chr5	+	4261	16	NNC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	0	-216	intron_retention	FALSE	non_canonical	0	0	junction_1	826.434967529542	1	158	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108213581	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108217056_108217390_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235940_108239966_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108252021_108252301_108252397_108254453
4158	chr18	+	2993	11	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	466.278125157078	12	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35695279	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695313_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714767_35720711_35720907_35721384_35721507_35723432
4159	chr6	-	3448	15	NIC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	9	-6	intron_retention	FALSE	canonical	1	1040	junction_7	592.233062231416	407	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTATCCCTTTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	88875753	88860461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
4160	chrX	+	4797	26	NNC	ENSMUSG00000000037.18	novel	4842	26	NA	NA	2	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	124.536555275951	8	67	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGGATGTTATTTTG	1337	False	NA	NA	False	NA	NA	NA	159945747	160041212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159946245_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160016284_160016300_160017622_160017693_160020475_160020752_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
4162	chr17	+	3669	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	-1112	40	0	-40	multi-exon	FALSE	canonical	3	2767	junction_1	286	18	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAATTTTTAAAACTAAAA	NA	False	NA	NA	False	NA	NA	NA	37313445	37321484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_37315796_37316941_37317087_37320310
4163	chr16	-	2519	10	NIC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	697	combination_of_known_junctions	FALSE	canonical	3	119	junction_8	731.055553444622	1078	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGCCAAGTAGAACTGGAA	NA	False	NA	NA	False	NA	NA	NA	22084676	22064500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077614_22078012_22084490
4164	chr1	+	4201	32	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	210.453027031898	1	92	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGAGAGCCTCCTGCTT	3060	False	NA	NA	False	NA	NA	NA	171910391	171949883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939597_171940563_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
4165	chr5	-	3399	8	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-82	-4	intron_retention	TRUE	canonical	2	160	junction_1	704.957083655394	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCTGTAGAGTTTTTAG	4413	False	NA	NA	False	NA	NA	NA	138167987	138162848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163335_138163424_138164171_138165897_138166102_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821
4166	chr5	-	3224	17	NNC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	15	-5	intron_retention	FALSE	canonical	0	0	junction_7	463.940324826372	2	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAAGCTGTTGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	149559788	149540314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149546987_149548429_149548591_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
4167	chr2	+	4454	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	27	0	27	0	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	3555	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTCCAATAACTTGGC	3994	False	NA	NA	False	NA	NA	NA	127429168	127448749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
4168	chr2	-	4220	14	NNC	ENSMUSG00000027104.19	novel	4195	14	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	121.070471922751	2	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722932	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73694705_73694846_73704013_73704090_73710628_73710726_73722818
4169	chr9	-	6162	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	12	-30	combination_of_known_junctions	FALSE	canonical	3	35	junction_6	54.6310859818433	167	71	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAATTAATCATGGCC	NA	False	NA	NA	False	NA	NA	NA	122695038	122678004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686131_122686227_122686534_122686704_122690773_122691325_122694978
4170	chr4	-	2161	15	ISM	ENSMUSG00000028809.17	ENSMUST00000030613.11	2940	17	-15	2917	0	-1182	5prime_fragment	FALSE	canonical	3	663	junction_2	210.552625638498	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGACCTCAAGCCCTCC	NA	False	NA	NA	False	NA	NA	NA	135080462	135052260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
4171	chr17	-	3702	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	26	3	0	-1	multi-exon	FALSE	canonical	3	426	junction_6	74.0811964579343	914	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTGTGTTCATTAAT	NA	False	NA	NA	False	NA	NA	NA	32540133	32522648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
4173	chr11	-	2072	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	380	409	-32	238	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCACTCTCCACCTT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
4175	chr4	-	3092	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	448	-560	0	3	3prime_fragment	FALSE	canonical	3	774	junction_12	215.450595691155	710	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGTTCTGGAATTATA	NA	False	NA	NA	False	NA	NA	NA	116484690	116458245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
4176	chr11	+	2831	17	NNC	ENSMUSG00000040463.17	novel	4448	25	NA	NA	-1	-226	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	883.334237420921	17	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGCTATATGACGCCAAT	NA	False	NA	NA	False	NA	NA	NA	72332201	72342368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336847_72340086_72340156_72340545_72340706_72340818_72340921_72341451_72341601_72341702
4177	chr9	+	3474	21	NNC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	6	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	533.927642569665	317	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	21279172	21316659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314687_21315355_21315488_21315991
4178	chr17	-	3314	14	Antisense	novelGene_ENSMUSG00000007564.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGAAAGGACGCAAAGCGG	NA	False	NA	NA	False	NA	NA	NA	21186133	21165695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21165844_21171602_21171694_21174874_21176287_21176970_21177113_21177216_21177373_21178979_21179095_21179199_21179270_21179647_21179784_21180725_21180902_21181214_21181275_21181845_21182002_21182835_21182976_21185497_21185590_21185713
4179	chr5	-	4202	13	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	29	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	587.052359012569	1	101	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTTATCTATGTCCCT	NA	False	NA	NA	False	NA	NA	NA	92231547	92200023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216256_92216302_92216358_92218215_92218298_92221018_92221138_92231387
4181	chr3	-	320	2	NNC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	22160	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	104702510	104702151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702397_104702435
4182	chr18	+	4224	22	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	2	-65	intron_retention	FALSE	non_canonical	0	0	junction_20	155.358980102254	1	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGTCAACTCCTGTTT	8966	False	NA	NA	False	NA	NA	NA	32970279	33000582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32997787_32997894_32998905
4183	chr1	+	3041	24	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	0	142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	321.841693405884	4	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTTAGTTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	85992340	86067015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061464_86066817
4184	chr14	-	6153	26	FSM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	-14	4	-14	-4	multi-exon	FALSE	canonical	3	104	junction_25	24.1979833870511	176	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATATGTTTTTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	72947457	72775389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947157
4185	chr14	-	2457	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	36	336	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2295.00255650729	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTCTTTAGTCTCCAT	NA	False	NA	NA	False	NA	NA	NA	36857173	36842444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36843649_36843712_36844184_36847116_36847307_36849607_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
4186	chr2	+	3379	19	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGGCTCCGCCCAACT	1063	False	NA	NA	False	NA	NA	NA	4995534	5017564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996294_4997731_4997835_4998553_4998667_4999379_4999496_5000533_5000673_5001910_5002144_5003344_5003453_5003539_5003646_5004484_5004594_5005672_5005868_5006074_5006194_5008820_5008985_5009751_5009922_5011153_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
4187	chr11	+	2699	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	49	3955	16	-3955	multi-exon	FALSE	canonical	3	6361	junction_7	586.595613027527	4422	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
4188	chr11	-	3102	16	NIC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	3	-1	intron_retention	FALSE	canonical	3	1486	junction_1	164.566042129664	2842	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTCTTTGACTGTAAA	NA	False	NA	NA	False	NA	NA	NA	75239116	75191176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
4189	chr10	+	2924	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-28	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	581.903459659449	5549	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173650	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128174245_128174294_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
4190	chr5	-	2950	12	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-36	0	intron_retention	FALSE	canonical	3	1920	junction_7	161.896201824778	595	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2284	False	NA	-125	True	NA	NA	NA	138170116	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138167210_138167359_138167541_138167610_138167987_138168578_138168659_138169987
4192	chr18	-	2119	15	ISM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	5460	2380	-1	148	3prime_fragment	FALSE	canonical	3	792	junction_3	62.3785759271072	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGGGATTAACAACTTT	5400	False	NA	NA	False	NA	NA	NA	10024681	9995445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533
4193	chrX	+	4362	24	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14630	3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	106.161164352296	3	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGCAATTAACAGCTAAG	4661	False	NA	NA	False	NA	NA	NA	159921893	160041195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922056_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
4194	chr15	-	2632	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-87	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	711.346005041772	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGACCTTCCCCCATT	NA	False	NA	NA	False	NA	NA	NA	81283882	81247870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248947_81249297_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
4195	chr4	+	3594	17	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.242061459137964	1	86	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTGCACCGCGCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	135047805	135080462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054535_135056687_135056810_135059034_135059122_135059471_135059550_135065114_135065392_135067814_135067934_135068157_135068349_135069682_135069885_135071174_135071291_135071809_135071981_135074044_135074172_135074426_135074520_135080411
4196	chr4	+	2707	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181872	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	133.704483428526	4	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147395001	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147592042_147592098_147595209_147595337_147596801_147597189_147597272_147597763_147598014_147598110_147599113
4197	chr10	+	2662	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	-65	5	-65	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	527	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21854505	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
4198	chr10	+	1669	2	ISM	ENSMUSG00000036875.16	ENSMUST00000137378.2	2085	6	5279	-4	5279	-1	3prime_fragment	FALSE	canonical	0	0	junction_1	0	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCACTGAGTCATTTTTC	NA	False	NA	NA	False	NA	NA	NA	62807033	62809962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_62807770_62809029
4199	chr19	-	4875	23	FSM	ENSMUSG00000024908.16	ENSMUST00000025846.16	4841	23	-34	0	-5	0	multi-exon	FALSE	canonical	3	106	junction_9	88.0225482945391	274	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	3625754	3504927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
4200	chr10	-	3825	9	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	5	-178	intron_retention	FALSE	canonical	3	1924	junction_2	91.1824236078423	53	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358265	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206
4201	chr1	+	3152	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	0	134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	323.432606645753	106	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTGACCAGACTTTAGT	NA	False	NA	NA	False	NA	NA	NA	85992362	86067007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017841_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
4203	chr7	+	4394	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-5	2920	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	106.302634021928	115	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTATAATCTTACTGAA	9993	False	NA	NA	False	NA	NA	NA	42863457	42879186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42870265_42870307_42872998_42873126_42873324_42873386_42875135
4204	chr1	+	3096	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	19	134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	320.587002296828	59	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTGACCAGACTTTAGT	NA	False	NA	NA	False	NA	NA	NA	85992381	86067007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061498_86064784_86064839_86066801
4206	chr11	+	3461	14	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-5	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	216.749193811076	1069	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGCTTGTCTGGATTC	NA	False	NA	NA	False	NA	NA	NA	74788934	74800163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790229_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871
4207	chr6	-	4249	30	ISM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	4579	0	-527	0	3prime_fragment	FALSE	canonical	3	436	junction_21	80.0553019319754	1	98	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	7974	False	NA	NA	False	NA	NA	NA	125164085	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039
4209	chr10	+	3000	10	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	717	junction_1	90.522488850309	263	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	NA	False	NA	NA	NA	21870581	21875797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21874149_21874558
4211	chr5	-	3695	7	NIC	ENSMUSG00000029328.16	novel	1477	8	NA	NA	-15	-10	intron_retention	FALSE	canonical	3	110	junction_6	363.263181300953	617	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATAAAATCTCAGTTAA	NA	False	NA	NA	False	NA	NA	NA	100186769	100181445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
4212	chr2	-	4215	28	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	3	-5	intron_retention	FALSE	canonical	3	271	junction_24	29.0992813585317	915	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGACCATTTGCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	103591603	103551609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
4214	chr1	-	4710	8	Genic_Genomic	ENSMUSG00000054770.17	novel	5016	10	NA	NA	-6934	-32413	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGTTAGCGTTTATGCTC	NA	False	NA	NA	False	NA	NA	NA	58065049	58035173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_58035467_58037249_58037379_58040374_58040453_58042050_58042137_58052663_58052901_58054516_58057142_58058746_58058900_58063940
4217	chr8	+	2524	16	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	464.761367681188	8	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	NA	False	NA	NA	NA	75836196	75854325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836859_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
4218	chr1	+	4529	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	10	-6	-8	0	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	520	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTGAAAGTAGATCATTT	NA	False	NA	NA	False	NA	NA	NA	93731696	93749823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
4219	chr3	-	3395	25	NIC	ENSMUSG00000042520.17	novel	3494	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_17	275.661426794215	783	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGCGTTCTTTCCGTG	3547	False	NA	NA	False	NA	NA	NA	89959782	89913525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
4220	chr11	+	1667	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	16	-270	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4268.40042170366	1	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATCATGCCTCCATC	3051	False	NA	NA	False	NA	NA	NA	75623754	75656401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650235_75655528
4221	chr17	+	4197	23	NIC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	29	2	intron_retention	FALSE	canonical	3	368	junction_15	32.648801124636	116	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCTCTGTGCTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	29879623	29922335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
4223	chr17	-	4417	15	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	17	-1136	intron_retention	FALSE	canonical	0	0	junction_7	282.063216608024	2	99	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCCATTCTTTGCCTGTC	8692	False	NA	NA	False	NA	NA	NA	24470366	24442307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24444052_24445448_24445577_24445657_24445758_24449289_24449373_24450284_24450466_24450758_24450883_24453343_24453536_24456054_24456207_24458820_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
4224	chr19	-	3957	19	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_5	663.071595951768	3	133	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTGGCTAACTACTTGG	3918	False	NA	NA	False	NA	NA	NA	5345431	5323960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329863_5329978_5333670_5333779_5333885_5334753_5336216_5336445_5336604_5336977_5337096_5337313_5337562_5337655_5337937_5338037_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
4225	chr5	-	4163	14	NIC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	-23	-4	combination_of_known_splicesites	FALSE	canonical	1	82	junction_8	141.267047460563	18	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACATTAGCTGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	22755325	22691490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22733694_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
4226	chr4	-	3955	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	40	1	40	-1	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	1756	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATTGCTGTGTGATTAA	NA	False	NA	NA	False	NA	NA	NA	148172448	148161518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
4227	chr1	+	4899	9	NNC	ENSMUSG00000026039.10	novel	4939	9	NA	NA	46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	102.374847374734	428	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCTATCTATTTATTTA	5185	False	NA	NA	False	NA	NA	NA	58035175	58065058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054511_58057143_58058747_58058902_58063942
4228	chr10	-	1601	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-4	886	-4	-886	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	6	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAGGAGTCAAAATCCAC	9	True	NA	NA	False	NA	NA	NA	128401860	128394522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
4229	chr7	-	4044	13	NNC	ENSMUSG00000043262.17	novel	4616	12	NA	NA	-11	100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.9429830583599	3	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTATCCCAAAGGTCCCC	NA	False	NA	NA	False	NA	NA	NA	46608231	46573186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46573513_46573550_46574092_46574273_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46608138
4230	chr14	-	2664	8	NIC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-44	333	combination_of_known_splicesites	FALSE	canonical	3	93	junction_2	1831.04794350901	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTCTGTCTTTAGTCTC	NA	False	NA	NA	False	NA	NA	NA	36857273	36842447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36844184_36847116_36847289_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
4231	chr6	-	3026	11	NIC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-32	-24	intron_retention	FALSE	canonical	0	0	junction_1	305.477331401202	1643	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9140	False	NA	NA	False	NA	NA	NA	88495842	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88482276_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
4232	chr4	+	2007	6	Intergenic	novelGene_2053	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	33.8088745745847	163	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	2319	False	NA	NA	False	NA	NA	NA	146289377	146319729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289519_146291416_146291510_146312913_146312972_146316363_146316491_146317966_146319330_146319504
4233	chr9	+	4251	25	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	272.999844195112	3	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATAGGTTGTATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	44290842	44303653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291809_44291912_44292373_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299480_44299574_44299663_44299778_44299899_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
4234	chr11	-	3163	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9036	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	508.844835216523	4	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	388	False	NA	NA	False	NA	NA	NA	106615256	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590463_106590712_106605727_106605755_106605844_106606008_106615196
4235	chr15	+	2665	19	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	465.500832105978	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756678	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828_81798915_81798994
4236	chr1	-	2336	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2064.88049713673	2100	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287098	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281513_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
4237	chrX	-	3131	8	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_7	375.902505814408	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231306	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23231194
4238	chr12	+	6672	28	ISM	ENSMUSG00000042029.8	ENSMUST00000084828.5	4684	29	159	-1907	127	-213	3prime_fragment	FALSE	canonical	3	183	junction_1	32.2243081487453	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGCAATCCTAACTGAGT	NA	False	NA	NA	False	NA	NA	NA	116369180	116427138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
4239	chr11	+	2661	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3955	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	209	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55390394_55390431
4240	chr19	-	3724	12	Antisense	novelGene_ENSMUSG00000015176.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.287479787288034	2067	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCGGGAGGAGAGACCCAG	NA	False	NA	NA	False	NA	NA	NA	46073960	46064315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46064587_46067139_46067198_46067314_46067458_46067565_46067695_46068346_46068529_46069746_46069858_46069975_46070114_46070684_46070813_46070951_46071801_46071956_46072064_46072187_46072290_46072454
4242	chr14	+	3378	22	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	5	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	163.364178678447	5	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAAGCCCTGCTGGCCTC	NA	False	NA	NA	False	NA	NA	NA	32043980	32070100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054446_32054559_32054704_32054860_32055666_32055775_32059729_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
4243	chr13	+	3449	11	NIC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	216.614611695518	1074	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120151935	120169618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_120152050_120156425_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
4245	chr5	-	3113	4	FSM	ENSMUSG00000066551.13	ENSMUST00000139443.8	923	4	-29	-2161	0	-538	multi-exon	FALSE	canonical	3	5649	junction_3	1332.80464518331	34	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGGTTTTAAATATTAGT	6764	False	NA	NA	False	NA	NA	NA	148989850	148984049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148986712_148987104_148987251_148987397_148987562_148989709
4246	chr4	+	5401	4	FSM	ENSMUSG00000028211.12	ENSMUST00000029865.4	5404	4	3	0	3	0	multi-exon	FALSE	canonical	3	122	junction_3	56.8409085860605	341	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	1	True	NA	NA	False	NA	NA	NA	11156433	11174379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11169709
4247	chr12	-	3063	4	Antisense	novelGene_ENSMUSG00000116883.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATCCTGCCTCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	20687905	20675344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_20675465_20683108_20683234_20683435_20683498_20685149
4248	chr15	+	3795	11	NIC	ENSMUSG00000022385.12	novel	2641	12	NA	NA	-18	-5	intron_retention	FALSE	canonical	3	528	junction_1	60.572601066819	6	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACATTTGGACGTGTAG	7119	False	NA	NA	False	NA	NA	NA	85743927	85760769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85759420_85759736_85759953_85760349
4249	chr10	+	2635	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	583.969496163096	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1587	False	NA	NA	False	NA	NA	NA	79690464	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79694848_79694958_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699852_79699931
4250	chr6	-	3320	7	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	5	intron_retention	FALSE	canonical	3	591	junction_1	83.0776076261762	1716	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTATTACTTGTCCATT	NA	False	NA	NA	False	NA	NA	NA	72416539	72409776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72411379_72411963_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
4251	chr4	-	5194	23	FSM	ENSMUSG00000029016.14	ENSMUST00000030879.12	3306	23	-13	-1875	-5	0	multi-exon	FALSE	canonical	3	89	junction_12	12.7042811811837	363	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGTCTCCACGGTGCT	7409	False	NA	NA	False	NA	NA	NA	148123283	148088715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095268_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
4252	chr4	-	5730	18	FSM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	-7	-2698	-7	-13	multi-exon	FALSE	canonical	3	379	junction_11	50.1315225199974	420	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGGCTTGGGTGGACTCC	NA	False	NA	NA	False	NA	NA	NA	115980863	115951473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
4253	chr1	+	2134	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	50	363	50	-363	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGACCGTTTGTCATA	NA	False	NA	NA	False	NA	NA	NA	4928086	4967765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
4254	chr2	+	2970	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	1033	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGGATGCCCCTAGGTG	651	False	NA	NA	False	NA	NA	NA	26279357	26287133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286016_26286172
4255	chr2	-	4126	13	FSM	ENSMUSG00000027104.19	ENSMUST00000112010.9	4037	13	-92	3	0	-3	multi-exon	FALSE	canonical	3	85	junction_9	68.6093510795398	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGCTTGTTTTTAATC	NA	False	NA	NA	False	NA	NA	NA	73722972	73646855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722818
4256	chr2	+	4169	36	NNC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_28	84.0147411749502	2	50	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	NA	False	NA	NA	False	NA	NA	NA	180961573	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994357_180994460_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
4257	chr12	-	5420	22	NIC	ENSMUSG00000020593.17	novel	5581	21	NA	NA	5	-11	combination_of_known_junctions	FALSE	canonical	3	30	junction_21	35.2563659197666	176	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCTGAAAATCAGGCATA	7251	False	NA	NA	False	NA	NA	NA	16639762	16585965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16634508_16634653_16639718
4259	chrX	-	3716	27	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-4630	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_26	146.05792398827	2	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGATACTCTGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	59229079	59101322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59228955
4260	chr2	+	4427	6	NIC	ENSMUSG00000027397.15	novel	3219	10	NA	NA	-2244	-4	intron_retention	FALSE	canonical	3	303	junction_1	98.2677973702474	1	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGAAAAATTTCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	129045995	129053525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
4261	chr5	+	3596	25	NNC	ENSMUSG00000029250.6	novel	4145	25	NA	NA	30	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	97.4987090370375	20	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTACTGTTGTGATAAGA	NA	False	NA	NA	False	NA	NA	NA	77458367	77497084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273_77484443_77487167_77487265_77488221_77488317_77490376_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496223_77496971
4262	chr16	+	3479	20	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	9	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	328.681492551233	17	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTGACTACTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	13598585	13632697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631212_13631259_13631505_13631544
4263	chr11	-	4254	14	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	42	junction_6	945.219807879152	3	90	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTGGTCCTTGGCTTT	5929	False	NA	NA	False	NA	NA	NA	100510447	100473646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480504_100480605_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100489555_100490010_100490136_100492553_100492643_100510353
4265	chr18	+	2988	19	NNC	ENSMUSG00000003779.17	novel	3107	19	NA	NA	15	0	intron_retention	FALSE	non_canonical	0	0	junction_1	256.985474201592	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6290	False	NA	NA	False	NA	NA	NA	34758100	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758210_34758507_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
4267	chr10	-	4050	16	NNC	ENSMUSG00000020097.15	novel	4102	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	128.612700254161	335	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	60983450	60934420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_60935921_60935999_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983301
4268	chr18	-	7174	9	FSM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	177	126	3	-126	multi-exon	FALSE	canonical	3	105	junction_2	12.5642100826116	138	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTATCTACCTACATTC	NA	False	NA	NA	False	NA	NA	NA	46413883	46368543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_46374769_46379628_46379738_46381937_46382123_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407656_46407776_46413746
4269	chr6	-	2909	14	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	1178	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	944.849163003494	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCTATCCCTTTGGTTCT	563	False	NA	NA	False	NA	NA	NA	88874481	88860462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870198_88874404
4270	chr14	+	4661	43	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	23	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	274.23244770477	1	76	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886795	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887417_47887521_47887855_47888029_47901212_47901773_47904752_47904891_47907581_47907756_47910394_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929932_47930860_47930952_47931331_47931401_47932066_47932103_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
4271	chr17	+	2995	10	NIC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	12	-4	intron_retention	FALSE	canonical	3	3235	junction_6	191.836993561631	11	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTCCCAAGTGCTGG	NA	False	NA	NA	False	NA	NA	NA	13135347	13143950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
4272	chr6	+	1308	9	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-9	3289	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	343.870887834373	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATTCTTACACAAGGAT	5428	False	NA	NA	False	NA	NA	NA	125108862	125114956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110763_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597
4273	chr11	-	2227	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1140	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGACTGAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48644039_48644115
4275	chr10	-	2389	17	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	1156	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	905.861744417988	4	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	86540217	86526703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86529882_86530261_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157
4276	chr16	-	3234	22	NNC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	484.371392898573	1207	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	91443834	91418282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434883_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
4277	chrX	+	2829	15	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	718.545430515208	1100	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74139482	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74139734_74140439_74140508_74140840_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
4279	chr18	+	3531	18	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-63	0	intron_retention	FALSE	canonical	3	938	junction_12	101.336911094492	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6186	False	NA	NA	False	NA	NA	NA	34757996	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
4280	chr8	+	3122	6	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-90	-797	multi-exon	FALSE	non_canonical	0	0	junction_5	478.728900318333	320	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATATGTACGTGTGGCAC	NA	False	NA	NA	False	NA	NA	NA	20697894	20726469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149_20725078_20726262
4281	chr15	-	2631	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	1528.4851702112	10	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	378	False	NA	NA	False	NA	NA	NA	36609216	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557_36608761_36608946
4282	chr11	-	5141	25	FSM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	2	10	2	-10	multi-exon	FALSE	canonical	2	205	junction_2	31.5695880379977	253	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTATTTGGGGCAT	NA	False	NA	NA	False	NA	NA	NA	53598144	53540355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
4283	chr5	+	1387	8	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_7	487.320872375749	80	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5417	False	NA	NA	False	NA	NA	NA	100666318	100695646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100695169
4285	chr12	+	3297	3	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-4	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	323.5	17	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516886	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86561272_86561325_86565594
4286	chr11	-	3888	11	NNC	ENSMUSG00000018428.16	novel	3721	11	NA	NA	214	-2	at_least_one_novel_splicesite	FALSE	canonical	2	77	junction_10	249.485490560072	853	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGAGTCCATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	88754329	88721619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88754007
4287	chr13	-	3310	12	NIC	ENSMUSG00000032745.19	novel	3694	13	NA	NA	176	-5	combination_of_known_splicesites	FALSE	canonical	3	15	junction_10	340.73585901668	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATATTGTTGTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	111626386	111562218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111623956_111624905_111626251
4288	chr7	-	3247	4	NNC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-22	-11	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	156.043441244916	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGGAAGAACCTGGCGTG	NA	False	NA	NA	False	NA	NA	NA	42342188	42309539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42312421_42314181_42314243_42314441_42314569_42342010
4289	chr14	+	3861	4	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.494107593803	19	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGGTTTCTTTGTGTA	9630	False	NA	NA	False	NA	NA	NA	47535725	47560549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535867_47547842_47548571_47556868_47557517_47558205
4290	chr11	-	2268	1	FSM	ENSMUSG00000082454.4	ENSMUST00000120566.2	1848	1	-162	-258	-162	258	mono-exon	FALSE	NA	NA	NA	NA	NA	6	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCAGACCTTCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	48644703	48642435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_48642400_48644700
4291	chr12	+	3289	2	Intergenic	novelGene_4375	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	74	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAATGTTAGAGATTCCT	NA	False	NA	NA	False	NA	NA	NA	68605039	68608393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68607549_68607613
4292	chr10	-	2552	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	20	-10	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_11	597.502584800246	388	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATTTGCTCACTGTTGT	6	True	NA	NA	False	NA	NA	NA	128401836	128393646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399674_128401608
4293	chr14	+	3427	1	NIC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-857	-3776	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	71	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCAGGTGGAGTCTACAA	1494	False	NA	NA	False	NA	NA	NA	63372109	63375536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_63372100_63375500
4294	chrX	+	2846	15	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	673.108858740015	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74139482	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150712_74150857_74151784_74151911_74152301
4295	chr8	-	3396	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	249.752964366545	131	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCACTGTCTGCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	96615026	96590764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591876_96593444_96594411_96595892_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
4296	chrX	-	3388	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3736	0	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_6	415.817192405509	124	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23185154	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23184851
4297	chr1	+	4533	24	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_12	40.7907195049507	275	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGACCCACTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	128031036	128165469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109902_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
4298	chr10	+	4153	18	FSM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	-32	-6	26	0	multi-exon	FALSE	canonical	3	273	junction_1	40.1674694938122	272	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	25235721	25399417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
4299	chr5	-	3335	8	FSM	ENSMUSG00000029328.16	ENSMUST00000149384.8	1477	8	-15	-1843	-15	-6	multi-exon	FALSE	canonical	3	110	junction_7	409.537668646996	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATCTCAGTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
4301	chr5	+	4060	22	FSM	ENSMUSG00000036817.15	ENSMUST00000110884.9	3955	22	-63	-42	-40	-3	multi-exon	FALSE	canonical	3	224	junction_8	208.642464528521	341	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTTGTCTTATCTCT	NA	False	NA	NA	False	NA	NA	NA	139186351	139235592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
4302	chrUn_JH584304v1	-	3410	4	Intergenic	novelGene_4675	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_3	157.888146061276	786	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACAAAACAAAAACTAC	NA	False	NA	NA	False	NA	NA	NA	59034	52684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55702_56985_57152_58563
4304	chr7	-	2607	20	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	31	849	-22	-849	5prime_fragment	FALSE	canonical	3	1924	junction_13	281.147569220633	169	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCCACTGCCCAGCAGA	NA	False	NA	NA	False	NA	NA	NA	126165552	126146475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
4305	chr4	-	4390	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	517	junction_11	115.160039556887	618	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACGGACTGTGTTTGTTG	6746	False	NA	NA	False	NA	NA	NA	126096481	126057878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
4306	chr13	-	2777	16	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	477.40719167883	124	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498341	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480317_74480381_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
4307	chr1	+	3606	15	NNC	ENSMUSG00000026439.15	novel	2456	14	NA	NA	-5491	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	145.075279543739	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	NA	False	NA	NA	NA	132399611	132433397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132399806_132411789_132411816_132412483_132412657_132413185_132413247_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
4308	chr8	+	2757	17	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	202	-2098	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	856.220108967315	18	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760749	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111777010_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
4309	chr8	+	2572	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	-10	3	intron_retention	FALSE	non_canonical	0	0	junction_2	427.66142371429	9	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCTGTGTGAATACAAGG	NA	False	NA	NA	False	NA	NA	NA	75836241	75854324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836838_75837019_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
4310	chr11	-	3575	4	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	63	-8	intron_retention	FALSE	non_canonical	0	0	junction_3	641.096109972773	3	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGCACTTTCTCCCCC	NA	False	NA	NA	False	NA	NA	NA	96713488	96708247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96713383
4311	chr4	-	3115	18	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	674.199851265459	64	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTGCGTTCTGGCCA	1	True	NA	NA	False	NA	NA	NA	43000434	42979966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42982932_42983055_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
4312	chr11	-	1990	1	Genic_Genomic	ENSMUSG00000020377.16	novel	NA	NA	NA	NA	-419	-562	mono-exon	FALSE	NA	NA	NA	NA	NA	3	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGATACGCGCGCTCAGC	9873	False	NA	NA	False	NA	NA	NA	50129862	50127872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_50127900_50129900
4313	chr4	-	2965	9	NIC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_8	517.29825475735	53	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327199	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323225_141327158
4314	chr2	-	3371	30	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.182465607659627	17	58	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGCACTTCCTCCCACG	NA	False	NA	NA	False	NA	NA	NA	146919914	146854961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855115_146866425_146866556_146866634_146866746_146867113_146867224_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871547_146871644_146871703_146871786_146871895_146876771_146876817_146878578_146878714_146880086_146880206_146882733_146882870_146883905_146884012_146884090_146884182_146884777_146884851_146889552_146889639_146891211_146891308_146891900_146891983_146893632_146893686_146903164_146903216_146903315_146903464_146905161_146905281_146910711_146910774_146916802_146916944_146919396
4315	chr6	+	1592	6	Antisense	novelGene_ENSMUSG00000005667.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGATTGAATTCAGCAGC	5340	False	NA	NA	False	NA	NA	NA	83282735	83288847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_83283794_83285915_83286044_83286446_83286536_83287393_83287501_83288190_83288354_83288800
4316	chr2	-	4901	26	NNC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	114.279404968699	3	76	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGATCTGGACTGTTTT	520	False	NA	NA	False	NA	NA	NA	119617962	119594446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602520_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617895
4317	chr14	+	4583	6	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	106.010188189626	7	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTCATGGTTTCTTTGT	9633	False	NA	NA	False	NA	NA	NA	47535728	47560546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47550941_47551032_47556868_47557354_47557393
4318	chr16	+	3482	17	NIC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	3	2	combination_of_known_splicesites	FALSE	canonical	3	30	junction_8	254.136989387614	1048	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598579	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
4319	chr2	-	5756	2	FSM	ENSMUSG00000027620.17	ENSMUST00000128243.2	1008	2	60	-4808	-3	-797	multi-exon	FALSE	canonical	3	2349	junction_1	0	5	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	156022072	156015670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156021161_156021806
4320	chr10	-	3077	9	NNC	ENSMUSG00000075232.7	novel	3204	8	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	147.977986116179	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAGAAAGTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	40178182	40163459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40163568_40163688_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
4322	chr9	+	3381	23	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	523	36	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCGGCGGCGACGCTGCA	NA	False	NA	NA	False	NA	NA	NA	61824558	61854025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826253_61826893_61826976_61827156_61827239_61828299_61828529_61831186_61831488_61831893_61832093_61832250_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61842662_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
4323	chr2	+	3652	22	NNC	ENSMUSG00000070544.7	novel	3856	21	NA	NA	40	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	99.1163909599018	53	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAACTTAGCGTCTGCCTG	NA	False	NA	NA	False	NA	NA	NA	160487939	160564679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371_160563909_160563975
4324	chr4	-	4569	29	FSM	ENSMUSG00000028433.15	ENSMUST00000108068.8	4380	29	-190	1	-190	-1	multi-exon	FALSE	canonical	3	748	junction_17	84.4073804080362	899	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTCTCCGTGTTCTGG	-5	True	NA	NA	False	NA	NA	NA	41275334	41194313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
4325	chr16	-	2317	4	NNC	ENSMUSG00000116673.2	novel	1556	5	NA	NA	13836	965	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.5759527879163	42	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTGGTCATAGTATC	NA	False	NA	NA	False	NA	NA	NA	97869321	97865678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_97866186_97866234_97867866_97868954_97869016_97869203
4327	chr14	+	4614	22	NIC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	291	junction_9	30.2922275116745	66	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATCCCTCTCATTACTC	NA	False	NA	NA	False	NA	NA	NA	20724387	20744915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
4328	chr8	-	584	2	FSM	ENSMUSG00000031984.9	ENSMUST00000212808.2	3663	2	-31	3110	18	-3110	multi-exon	FALSE	canonical	3	1845	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGGGCACTATAAACCTC	NA	False	NA	NA	False	NA	NA	NA	125589735	125587538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_125588011_125589623
4330	chr16	-	3263	27	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	368	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGACGTGGATGTCTGAC	NA	False	NA	NA	False	NA	NA	NA	48451891	48251677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48251766_48257637_48257690_48262765_48262801_48266673_48266742_48269662_48269754_48270360_48270469_48272791_48272953_48281040_48281149_48300190_48300312_48319104_48319189_48320455_48320524_48322663_48322731_48330557_48330704_48334948_48335104_48378731_48378862_48381937_48382002_48385938_48386078_48402777_48402846_48407252_48407499_48432647_48432723_48436055_48436123_48438862_48439013_48442922_48443011_48444650_48444704_48447272_48447468_48451064_48451563_48451753
4331	chr9	+	3111	22	FSM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	-61	0	-51	0	multi-exon	TRUE	canonical	3	669	junction_10	53.4673910412871	1413	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	98445722	98470435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
4332	chr6	-	3233	16	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	902.097053167415	1206	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	NA	False	NA	NA	NA	88875683	88860455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870150_88870340_88870496_88874268_88874499_88875626
4333	chr9	+	3728	8	Intergenic	novelGene_1076	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGAGGAAGTGAGACAGGG	NA	False	NA	NA	False	NA	NA	NA	58125846	58157062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129152_58136640_58136691_58137110_58137369_58140434_58140531_58141635_58142217_58154257_58154725_58156946
4334	chr3	+	2901	8	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	728.704301609146	17	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836589	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842170_95844403_95844508_95845193_95845352_95851618_95851674_95852491_95854414_95854642
4335	chr12	+	3790	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	28	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	309.868117107908	4	80	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGAGTCGTTCATGC	NA	False	NA	NA	False	NA	NA	NA	86516918	86568393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535325_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86566029_86566103
4336	chr8	-	5344	13	NNC	ENSMUSG00000033658.17	novel	6612	12	NA	NA	27	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.332125123752	174	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	111754369	111729821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731178_111732416_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
4337	chr14	-	2691	16	Antisense	novelGene_ENSMUSG00000021806.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACTGGGTGTTTCTGCCC	1148	False	NA	NA	False	NA	NA	NA	19860116	19818846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_19819004_19828061_19828212_19828803_19829049_19829601_19829804_19831200_19831431_19839734_19839882_19840347_19840475_19841575_19841723_19847235_19847349_19848461_19848712_19852403_19852630_19853118_19853287_19855365_19855493_19855907_19856081_19857992_19858151_19860045
4338	chr15	-	4134	12	NNC	ENSMUSG00000023022.15	novel	4243	11	NA	NA	12	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.918177393699	1	80	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACATTTCCAGTGTCCA	7290	False	NA	NA	False	NA	NA	NA	99773285	99676357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99678505_99678544_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724712_99741551_99741698_99773213
4339	chr2	-	3181	29	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	53	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGGGCACCAGCACTTCCT	NA	False	NA	NA	False	NA	NA	NA	146919920	146854967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855115_146866425_146866556_146866634_146866746_146867113_146867225_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871547_146871644_146871703_146871786_146871895_146876771_146876815_146880158_146880206_146882733_146882870_146883905_146884015_146884092_146884182_146884777_146884851_146889552_146889639_146891211_146891308_146891900_146891983_146893632_146893686_146903164_146903236_146903323_146903456_146905150_146905281_146910711_146910776_146916802_146916944_146919396
4340	chrX	-	3551	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	61	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	63	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTGTGTGAGACTGTT	NA	False	NA	NA	False	NA	NA	NA	149800257	149766140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149767569_149768821_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
4341	chr18	-	2797	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	13	239	13	-239	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	13	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTGAAAGCCTCTTGA	212	False	NA	NA	False	NA	NA	NA	35087397	35070705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
4342	chr17	-	3783	8	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_5	17.3075422983208	13	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGAACTTGGCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	22533811	22504858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507883_22508749_22508877_22511388_22511437_22528185_22528296_22528485_22528579_22531009_22531223_22532217_22532302_22533727
4344	chrX	-	4170	16	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	14321	-84	intron_retention	TRUE	non_canonical	0	0	junction_1	34.4903207033832	1	146	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATTAAATGCACACATATA	NA	False	NA	NA	False	NA	NA	NA	49709622	49652085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653111_49661487_49661541_49669749_49670434_49672767_49673135_49684337_49684851_49687010_49687166_49689620_49689768_49692247_49692403_49694884_49695040_49695839_49695982_49697347_49697485_49697563_49697692_49700981_49701119_49701581_49701728_49704237_49704393_49709551
4345	chr2	+	3658	16	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	42	0	intron_retention	FALSE	canonical	3	1260	junction_7	144.978711080857	6	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867619	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84875925_84876027_84876117_84876596_84876784_84876989
4346	chr9	+	5990	19	NIC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	28	-6	intron_retention	FALSE	canonical	2	66	junction_5	679.194768789202	5	197	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAATGCCTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	21279326	21316650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21279396_21298995_21299094_21299804_21300050_21300601_21300780_21303590_21303739_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747_21314798_21315355_21315488_21315991
4347	chr13	-	2408	10	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	893	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2866.24241477355	3	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	6895	False	NA	NA	False	NA	NA	NA	58548186	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58547729_58547805_58548146
4348	chr19	+	4290	24	NIC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	2	-13	intron_retention	FALSE	canonical	3	261	junction_5	214.904119826346	3	101	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATAAATAATAATTGGATG	1906	False	NA	NA	False	NA	NA	NA	8875477	8894023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
4349	chr10	+	5987	9	FSM	ENSMUSG00000040195.12	ENSMUST00000048099.5	6002	9	15	0	15	0	multi-exon	FALSE	canonical	3	115	junction_7	22.4499443206436	146	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTAGTCTTTTTAAATTAA	NA	False	NA	NA	False	NA	NA	NA	127512949	127536918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
4350	chr2	+	4913	24	NNC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	24	2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	80.3037710955962	3	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTGCCCTGCCTTCTT	4666	False	NA	NA	False	NA	NA	NA	18069470	18217201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_18069548_18069845_18070006_18075935_18076016_18097594_18097646_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
4352	chr11	+	5088	9	NIC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	10	5	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	204.655045136933	132	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTGTTCATGAGTTCCA	NA	False	NA	NA	False	NA	NA	NA	104122319	104222921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_104122434_104173193_104173307_104193186_104193237_104197451_104197585_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
4353	chr14	+	3314	21	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-1511	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	124.96175414902	6	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32045837	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055796_32059729_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
4354	chr1	+	7238	24	FSM	ENSMUSG00000026339.19	ENSMUST00000036025.16	7274	24	28	8	2	-8	multi-exon	FALSE	canonical	3	57	junction_5	11.149101195474	246	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTAATTTGGTTTCATT	NA	False	NA	NA	False	NA	NA	NA	121358805	121434181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121383799_121383901_121389192_121389230_121389615_121389709_121389961_121390013_121390827_121390915_121403760_121403878_121405563_121405627_121408543_121408618_121409724_121409807_121410329_121410396_121411015_121411070_121414331_121414395_121418850_121418960_121420633_121420717_121422124_121422163_121424712_121424798_121426936_121427051_121428918
4355	chr5	+	4309	33	Genic_Genomic	ENSMUSG00000106767.2_ENSMUSG00000106696.2	novel	2823	1	NA	NA	-6823	79060	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	8	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	56	False	NA	NA	False	NA	NA	NA	65767468	65863266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_65767535_65772602_65772947_65776285_65776395_65776961_65777109_65777889_65777955_65780321_65780443_65781262_65781394_65784425_65784543_65784902_65785107_65785340_65785466_65787261_65787395_65789051_65789125_65791514_65791674_65792657_65792784_65795084_65795244_65795897_65796009_65801364_65801479_65803675_65803816_65804430_65804480_65805266_65805351_65807736_65807850_65808487_65808640_65809730_65809879_65811349_65811443_65812131_65812254_65813616_65813752_65815689_65815771_65816947_65817077_65821198_65821297_65821770_65821860_65823452_65823657_65854107_65854281_65863071
4357	chr6	+	4172	13	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCAGGGGCGGGGGAGGG	1078	False	NA	NA	False	NA	NA	NA	122295257	122316599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298827_122299431_122299965_122300777_122302418_122302908_122309478_122310400_122311028_122311112_122311933_122312042_122313815_122313974_122316555
4358	chr19	+	5502	32	NNC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_25	84.6582405316006	2	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTTTATAAGGCTCTTAA	NA	False	NA	NA	False	NA	NA	NA	34899760	34953142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936903_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
4359	chr11	+	4898	10	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	106	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	217.935260519673	4	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	88890307	88911119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904379_88906358_88906458_88906544_88906644_88907020_88909319_88909848_88910662_88910707
4360	chr14	-	4463	8	NNC	ENSMUSG00000068245.15	novel	2973	9	NA	NA	-5061	-9	intron_retention	FALSE	canonical	3	330	junction_4	29.9278042861109	3	69	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTAATCCATGTTGCA	NA	False	NA	NA	False	NA	NA	NA	59607980	59584864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590831_59591756_59591825_59592588_59593900_59596924_59597033_59599182_59599305_59607902
4361	chr12	+	3178	7	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-63	intron_retention	FALSE	canonical	3	5890	junction_1	404.603269333746	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAGTCTTGAACTTTCA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24762765_24762859
4362	chr3	+	3614	28	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-354	31064	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	84	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCCCTCCTCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	89908067	89959816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908299_89909585_89909784_89910551_89910623_89915565_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924004_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935681_89938598_89938673_89941358_89941485_89941961_89942006_89945674_89945773_89946121_89946324_89951006_89951118_89952160_89952238_89955075_89955215_89959766
4363	chr11	-	3409	15	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9022	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_14	512.653963931514	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	402	False	NA	NA	False	NA	NA	NA	106615242	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606191_106615168
4364	chrX	-	3121	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227934	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086006_23086105_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
4366	chr17	+	3686	3	FSM	ENSMUSG00000036036.16	ENSMUST00000174672.2	2597	3	-1112	23	0	-23	multi-exon	FALSE	canonical	3	2767	junction_1	286	214	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGGGGAGGGGAGGTC	NA	False	NA	NA	False	NA	NA	NA	37313445	37321501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_37315796_37316941_37317087_37320310
4367	chr3	+	3530	27	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-553	31027	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACCCCGGGCCGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	89907868	89959779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908299_89909585_89909781_89910551_89910623_89915565_89915666_89916413_89916633_89917742_89917821_89919992_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935689_89938620_89938677_89941370_89941485_89941961_89942006_89945674_89945773_89946154_89946266_89952169_89952238_89955075_89955207_89959761
4368	chr2	+	3226	16	ISM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	8199	754	-3806	-754	3prime_fragment	FALSE	canonical	3	665	junction_2	70.0582614685806	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATTGAATCCCAGTCTCA	NA	False	NA	NA	False	NA	NA	NA	23054579	23088518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
4369	chr6	+	2604	3	ISM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	26	7	26	-7	intron_retention	FALSE	canonical	3	4542	junction_1	9.5	7289	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTAGTGGTCTTATCTT	NA	False	NA	NA	False	NA	NA	NA	122684552	122691585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122684893_122688496_122688763_122689587
4370	chr3	+	4004	17	NIC	ENSMUSG00000027774.17	novel	4078	18	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	186.187814702654	946	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTTCTTCCTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	67337445	67383862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
4371	chr2	-	4105	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112007.8	4195	14	81	9	0	2	multi-exon	FALSE	canonical	3	36	junction_11	109.668839867438	48	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722894	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
4372	chr18	+	3487	16	NIC	ENSMUSG00000003779.17	novel	3107	19	NA	NA	27	-1	intron_retention	FALSE	canonical	3	963	junction_7	94.8008438781006	2	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGGATTCCAAATTTAG	6302	False	NA	NA	False	NA	NA	NA	34758112	34765856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
4375	chr6	+	4622	29	ISM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	364	24	-114	-3	3prime_fragment	FALSE	canonical	3	196	junction_25	50.4156701425099	43	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACAGAGGTTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	116185362	116239623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
4376	chr10	+	2893	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	3	2	intron_retention	FALSE	canonical	3	717	junction_1	92.6728115468609	411	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTGTCATGTGTTAAC	NA	False	NA	NA	False	NA	NA	NA	21870584	21875799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873953_21874058_21874149_21874558
4377	chr1	+	4679	13	FSM	ENSMUSG00000026554.16	ENSMUST00000074144.11	4656	13	-33	10	3	-10	multi-exon	FALSE	canonical	3	475	junction_9	39.6410106105057	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGACTGCTGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	171975711	172023946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
4379	chr6	-	3604	5	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	12	-162	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	333.387443524797	126	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGATAACATGTTAGCAAC	4249	False	NA	NA	False	NA	NA	NA	35516722	35486002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35488108_35488200_35489253_35498834_35498919_35499616_35499731_35516473
4380	chr15	+	4406	19	NIC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	-10	-242	combination_of_known_splicesites	FALSE	canonical	1	10	junction_6	165.91817111508	454	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTAATGACTTACTTGT	50	False	NA	NA	False	NA	NA	NA	12117926	12185527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
4381	chr9	-	3978	24	NIC	ENSMUSG00000032480.18	novel	3968	23	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	3	19	junction_19	185.874645239503	321	5	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGCTGCTGTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	109946475	109913391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109937008_109937038_109938093_109938190_109942038_109942094_109944103_109944230_109944558_109944651_109946425
4382	chr14	-	2745	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-8	321	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1828.66440332829	9	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTAAGTGTCTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	36857237	36842459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849600_36852599_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
4383	chr3	+	4775	18	FSM	ENSMUSG00000007379.16	ENSMUST00000173206.8	4879	18	109	-5	53	5	multi-exon	FALSE	canonical	2	18	junction_4	64.3554145131754	27	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGATGTGTAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	103010028	103077090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
4385	chr11	-	6254	22	FSM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	-6	-2501	-6	2501	multi-exon	FALSE	canonical	3	117	junction_1	18.5612914946701	194	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGATGTTTGAGTGATATT	1263	False	NA	NA	False	NA	NA	NA	23845259	23810144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
4387	chr14	-	3132	7	NNC	ENSMUSG00000022051.16	novel	3259	7	NA	NA	6	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.697042630482	2879	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAACCTGCCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	67246299	67222697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67224227_67224295_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
4388	chr11	-	3752	22	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	411	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	232.74304342566	756	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTGAAAAACCAAGGTTTG	9418	False	NA	NA	False	NA	NA	NA	102209511	102195406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102195832_102196608_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209404
4391	chrX	+	3514	24	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	21	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	187.831149287657	1	53	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799444	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809663_150811105_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
4392	chr15	+	1889	10	Antisense	novelGene_ENSMUSG00000018042.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAACCCGCCTCGGTCTC	2202	False	NA	NA	False	NA	NA	NA	83037695	83056399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83038307_83038445_83038926_83043027_83043127_83044304_83044393_83044540_83044619_83045017_83045150_83046048_83046160_83046434_83046504_83050273_83050408_83056312
4394	chrX	+	4708	11	NIC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	14	-20	intron_retention	FALSE	canonical	3	374	junction_10	98.8130052169248	58	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGCTGTTACCTGGCA	NA	False	NA	NA	False	NA	NA	NA	158315677	158376057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158351011_158357940_158358094_158375066
4396	chr1	-	5847	11	ISM	ENSMUSG00000048402.15	ENSMUST00000062483.15	6637	14	185623	14	114592	-14	3prime_fragment	FALSE	canonical	3	103	junction_8	7.34846922834953	4	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTTTCATAATTTATC	NA	False	NA	NA	False	NA	NA	NA	118795726	118761875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708
4399	chr2	+	3627	20	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	269.578043114865	52	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7191	False	NA	NA	False	NA	NA	NA	29779794	29821757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
4400	chr7	-	2842	24	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_12	491.487945687525	303	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153807	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143124700_143124816_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
4402	chr11	+	2093	9	Antisense	novelGene_ENSMUSG00000119662.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	209	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCGGAGTGCCCGCCTAT	NA	False	NA	NA	False	NA	NA	NA	69557762	69563141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69558444_69558520_69558938_69559021_69559369_69559463_69559580_69559903_69560073_69560958_69561097_69561434_69561574_69561753_69561803_69563104
4403	chr17	-	3700	13	NNC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	-16	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	167.86872764819	2	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCACGAAGACATTTGTG	NA	False	NA	NA	False	NA	NA	NA	32540228	32522657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531304_32534425_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
4404	chr4	-	2722	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	230.538847051858	2118	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726968	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702958_147706414_147706532_147725357_147725463_147726791
4405	chr4	-	3676	20	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-7	3020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	142.935159543742	512	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATGGAGGAAGGACTG	NA	False	NA	NA	False	NA	NA	NA	115980863	115948440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115948534_115953458_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
4407	chr11	-	5854	7	NIC	ENSMUSG00000020142.13	novel	3926	8	NA	NA	10	-2	intron_retention	FALSE	canonical	3	286	junction_3	12.0646407139026	13	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGAGTAACGTGTTTT	7771	False	NA	NA	False	NA	NA	NA	20282703	20252206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_20256601_20257891_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
4408	chr12	+	3390	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565909_86566420
4409	chr2	+	4456	35	NNC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	-4	-10	intron_retention	FALSE	canonical	0	0	junction_14	79.2853296317149	1	92	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTATCAGGATGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	180961541	180998397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180987956_180988011_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
4412	chr8	-	3858	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21249	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	137.13938165239	42	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGTGAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	81585876	81491073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515434_81515528_81515724_81518017_81518244_81526729_81527025_81585823
4413	chr7	+	821	6	ISM	ENSMUSG00000023467.19	ENSMUST00000107762.10	1883	14	5943	41	3841	-41	3prime_fragment	FALSE	canonical	2	2	junction_5	28.8679753360017	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTGGCCTTGTCTTTTA	5125	False	NA	NA	False	NA	NA	NA	45169072	45171977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171773_45171863
4414	chr1	+	3489	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	-232	-145	0	145	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	1763	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTAGTTGATTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85992108	86067018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
4415	chr8	+	4704	5	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-2	0	intron_retention	FALSE	non_canonical	0	0	junction_4	26.9571419108184	74	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGGCTCCCTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	22550734	22561643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896_22558197_22558454
4417	chr2	+	4866	26	FSM	ENSMUSG00000035437.16	ENSMUST00000112920.2	4847	26	-39	20	-17	-3	multi-exon	FALSE	canonical	3	120	junction_1	33.7498088883478	201	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATTGCTTCATACAAAA	NA	False	NA	NA	False	NA	NA	NA	37342239	37456446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
4419	chr19	-	4994	11	FSM	ENSMUSG00000025154.16	ENSMUST00000163265.9	1812	11	29	-3211	29	-1	multi-exon	FALSE	canonical	3	6	junction_1	113.148398132718	292	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGTGGGTTCTGACTGGT	4556	False	NA	NA	False	NA	NA	NA	41790457	41755027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_41758636_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
4421	chr18	-	2739	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	88	222	88	-222	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTCCTTTGTGAATGGT	287	False	NA	NA	False	NA	NA	NA	35087322	35070688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
4423	chr2	+	1942	1	NIC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	8104	-6	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACATTTCTGTTGCTGGC	7526	False	NA	NA	False	NA	NA	NA	118470124	118472066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_118470100_118472100
4424	chrX	-	4238	10	NIC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-2	3	intron_retention	FALSE	canonical	3	342	junction_4	49.2072964578563	70	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTCCATTATGCCTG	NA	False	NA	NA	False	NA	NA	NA	156275042	156226847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
4425	chr3	-	1448	1	Intergenic	novelGene_3165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAACGAACCACCCCAAG	NA	False	NA	NA	False	NA	NA	NA	98226862	98225414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_98225400_98226900
4426	chr13	+	3813	12	NIC	ENSMUSG00000017756.10	novel	5142	24	NA	NA	-180	5	intron_retention	FALSE	canonical	3	654	junction_3	52.0974928411203	2	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAACTTCGTGTGCCTC	1488	False	NA	NA	False	NA	NA	NA	73945550	73964866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
4427	chr1	+	4597	25	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	69.803444279873	272	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGACCCACTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	128031062	128165469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128090505_128090596_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109902_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
4428	chr13	+	1948	1	ISM	ENSMUSG00000064138.15	ENSMUST00000091459.12	3892	10	455555	43	455461	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	35	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATAATCTTGTTTACCAT	NA	False	NA	NA	False	NA	NA	NA	78312363	78314311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_78312400_78314300
4429	chr15	-	3039	11	FSM	ENSMUSG00000003360.16	ENSMUST00000160506.8	3093	11	-5	59	0	-47	multi-exon	FALSE	canonical	3	15	junction_1	5.71751694356912	2	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAAGGGCTCTGATGTG	6999	False	NA	NA	False	NA	NA	NA	98560770	98545930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
4431	chr6	+	4770	18	FSM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	54	0	3	0	multi-exon	FALSE	canonical	3	107	junction_11	15.4671210608191	268	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGTATGTTGTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	33226073	33950914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33815909_33816066_33838995_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
4432	chr8	-	2709	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2029.25936133249	73	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATGAGTTCAATTTCT	NA	False	NA	NA	False	NA	NA	NA	43759998	43748105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43758069_43759391
4434	chrX	-	4941	31	Antisense	novelGene_ENSMUSG00000031010.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACTGGCGGTTAGCGGCCT	7410	False	NA	NA	False	NA	NA	NA	13006755	12908089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_12908347_12909793_12909892_12919469_12919588_12938451_12938563_12960160_12960415_12964686_12964833_12966669_12966750_12969564_12969680_12970821_12971041_12973303_12973420_12973902_12974153_12974226_12974366_12976308_12976466_12977328_12977434_12979796_12980004_12980744_12980882_12982860_12982995_12987669_12987755_12989401_12989750_12990806_12990901_12991632_12991844_12994443_12994688_12995215_12995365_12996463_12996584_12997963_12998095_12998306_12998587_13001181_13001307_13002681_13002808_13003844_13004014_13006347_13006456_13006647
4435	chr8	+	3371	17	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	254.482563253359	4	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395474_107396515
4437	chr5	+	4847	8	FSM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	9	0	9	0	multi-exon	FALSE	canonical	3	443	junction_2	231.190088764326	1090	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	119809091	119822789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_119810470_119812090_119812359_119813307_119813368_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
4438	chr8	-	3237	17	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	4376	-189	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	497.772754219985	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTCTGAGCTTACCGG	NA	False	NA	NA	False	NA	NA	NA	80433903	80410279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411907_80412573_80412686_80414069_80414108_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80432124_80432216_80433862
4439	chr3	-	4373	16	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	32	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTGGAGTAGTCGGCC	NA	False	NA	NA	False	NA	NA	NA	151931834	151916251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916336_151919611_151919703_151921226_151921268_151923045_151923084_151923469_151923520_151923609_151923684_151923848_151923907_151925318_151925482_151925567_151925667_151925770_151925875_151926101_151926203_151926320_151926422_151926901_151927044_151927718_151927881_151928464_151928618_151928922
4440	chr8	-	4379	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-20	-151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	212.328409780698	2	112	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTTCTTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	111573439	111537021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552724_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573334
4441	chr11	-	2585	10	NIC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	2	intron_retention	FALSE	canonical	3	1798	junction_6	86.1162005664439	4739	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120452087_120452986_120453074_120453189_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
4442	chr15	-	3157	9	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	258.479901297954	567	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033569	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
4444	chr1	+	3136	12	NIC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	288.167909042025	13	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406714	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93406791_93416845_93416877_93418878_93419000_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
4447	chr7	+	4009	6	FSM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	-5	0	-5	0	multi-exon	FALSE	canonical	3	115	junction_1	46.5403051128804	226	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	NA	False	NA	NA	NA	41248679	41277957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_41248825_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
4448	chrX	-	3918	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	41	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	140.432799209266	90	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGAGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	149800277	149766138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149767564_149768471_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
4449	chr9	+	3450	19	NIC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	4	2	combination_of_known_splicesites	FALSE	canonical	3	90	junction_8	568.393569632873	272	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	21279170	21316659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
4450	chr11	-	3385	9	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_6	1817.51086654248	2	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGAATTAAGTGAAATTGT	9654	False	NA	NA	False	NA	NA	NA	106679320	106672377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676266_106677051_106677106_106677810_106677901_106679098
4451	chr16	-	5640	31	NNC	ENSMUSG00000022822.17	novel	5372	31	NA	NA	0	-6	intron_retention	TRUE	non_canonical	0	0	junction_1	116.920300489978	3	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTAAAGCTCTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	20245103	20150061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20150461_20150581_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
4452	chrX	-	2919	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	-58	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	400.714457424347	36	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATTAATTGTGCCCATG	NA	False	NA	NA	False	NA	NA	NA	93256526	93232317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233428_93234155_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256376
4453	chr15	+	3739	9	Antisense	novelGene_ENSMUSG00000092014.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTGCCGCGGAGGCGC	5234	False	NA	NA	False	NA	NA	NA	99676353	99773345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99679174_99681402_99681535_99692289_99692403_99694624_99694679_99699989_99700094_99704303_99704451_99705537_99705627_99741556_99741705_99773213
4454	chrX	+	2918	21	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	43	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	938.051405840853	4	49	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20529179	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538391_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546028_20548679
4457	chr8	-	3067	16	NIC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-21	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	366.548853800175	1	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATTATCTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	86026119	85987018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86021487_86021587_86026083
4460	chr11	-	2459	12	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-81	intron_retention	FALSE	canonical	3	3830	junction_7	135.889539487588	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAGTAACTGTACAGTG	9654	False	NA	NA	False	NA	NA	NA	106679320	106672454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
4462	chr5	-	1467	8	Antisense	novelGene_ENSMUSG00000029131.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	797	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGTGGCACAGCTGCGC	NA	False	NA	NA	False	NA	NA	NA	29972087	29941064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_29941114_29953341_29953434_29955935_29956045_29957393_29957456_29958537_29958659_29969401_29969527_29970501_29970644_29971320
4463	chr3	-	4502	20	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGATGGCGGCCGTCGAGG	NA	False	NA	NA	False	NA	NA	NA	151940503	151916155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916336_151919611_151919703_151920459_151920523_151921226_151921268_151923045_151923084_151923469_151923520_151923609_151923686_151925290_151925482_151925567_151925674_151925778_151925875_151926101_151926203_151926320_151926422_151926901_151927044_151927718_151927881_151928464_151928618_151928922_151929001_151931714_151931854_151933806_151933882_151937512_151937658_151938029
4464	chr19	-	3107	20	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	638.745567716135	2	67	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3899	False	NA	NA	False	NA	NA	NA	5345450	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329494_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5345075_5345116_5345289
4465	chr1	-	5902	23	NNC	ENSMUSG00000042772.16	novel	5767	22	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_18	87.4744827019111	290	32	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGATCGGTGTGTAGAGG	NA	False	NA	NA	False	NA	NA	NA	152778409	152712749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152736513_152736617_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
4466	chrX	-	3688	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	183.815463352445	15	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800269	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767564_149768536_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
4467	chr8	-	5315	6	ISM	ENSMUSG00000003316.15	ENSMUST00000169020.8	7021	26	96443	-1100	15003	1100	3prime_fragment	FALSE	canonical	3	467	junction_5	26.0046149750386	374	46	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGTTTGTATTTGTCGA	NA	False	NA	NA	False	NA	NA	NA	111889405	111879952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_111884694_111886430_111886538_111887252_111887374_111888057_111888166_111888998_111889101_111889269
4468	chr11	+	1566	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-27	multi-exon	FALSE	canonical	3	1960	junction_1	0	288	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GTCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
4469	chr17	+	3274	6	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-32	-2020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1305.35916896462	178	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCCAGTGGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	13226850	13237001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912_13235497_13235916
4471	chr18	+	5328	21	NIC	ENSMUSG00000024271.9	novel	3466	22	NA	NA	0	-4	intron_retention	FALSE	canonical	3	667	junction_5	85.8992869586238	39	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAACTTTGTCTGATTTT	NA	False	NA	NA	False	NA	NA	NA	24737019	24771863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
4472	chr5	-	4879	17	NIC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	-7	-8	intron_retention	FALSE	canonical	3	158	junction_5	28.7793328623163	20	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTCTTAAAATGCAAGAT	NA	False	NA	NA	False	NA	NA	NA	9211726	9168884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
4473	chr11	+	3333	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-4	-2	intron_retention	TRUE	canonical	0	0	junction_4	208.838234438202	1127	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788919	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74791016_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
4474	chr4	+	3778	23	Intergenic	novelGene_1824	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	27	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGCCCGTCACGTGAT	3123	False	NA	NA	False	NA	NA	NA	41194325	41275131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41195247_41195333_41195528_41195609_41195672_41195744_41195852_41195941_41196042_41196325_41196532_41196727_41196808_41199216_41199266_41199493_41199585_41199714_41199903_41201463_41201534_41202273_41202460_41203533_41203573_41205523_41205740_41206154_41206330_41206837_41207105_41209352_41209570_41211704_41211800_41229753_41229849_41233602_41233718_41235518_41235590_41251529_41251672_41275039
4475	chr15	-	4686	16	Antisense	novelGene_ENSMUSG00000023025.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAACAAC	3715	False	NA	NA	False	NA	NA	NA	99912221	99871373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_99871744_99882795_99882935_99883916_99884072_99885280_99885359_99888172_99888311_99889605_99889708_99891201_99891313_99892542_99892598_99894346_99894555_99895249_99895357_99898715_99898928_99899680_99899732_99903121_99903289_99905490_99905608_99908170_99908340_99909714
4476	chr13	-	2959	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	218	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	494.050382665822	6	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTTGGTCAAGGT	NA	False	NA	NA	False	NA	NA	NA	74498058	74470377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74497859
4477	chr13	-	4905	5	FSM	ENSMUSG00000046351.12	ENSMUST00000125328.2	815	5	0	-4090	0	0	multi-exon	FALSE	canonical	3	71	junction_1	23.1124966197942	328	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTCTCCACTATACTA	9020	False	NA	NA	False	NA	NA	NA	23553364	23537272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
4479	chrX	-	6115	7	FSM	ENSMUSG00000034457.11	ENSMUST00000126283.8	2153	7	-17	-3945	-17	-6	multi-exon	FALSE	canonical	3	97	junction_5	9.18331820930394	152	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTACAAATGCCTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	96420839	96377451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
4480	chr12	+	2879	7	NIC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	-7	0	intron_retention	FALSE	canonical	3	562	junction_1	513.606096363957	286	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80992270	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
4481	chr15	-	3508	16	NNC	ENSMUSG00000063765.13	novel	2548	6	NA	NA	5720	11298	intron_retention	FALSE	non_canonical	0	0	junction_1	0	46	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCAGGTGGATCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	81572509	81551198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81551596_81552828_81552959_81554321_81554451_81555267_81555347_81559713_81559831_81560455_81560594_81561025_81561117_81566122_81566351_81566769_81566846_81567150_81567257_81568041_81568190_81568497_81568584_81568913_81569148_81569579_81569648_81570411_81570522_81571138
4482	chr2	+	3227	22	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	292.118146197508	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACTATGTCAGACTCCTT	7206	False	NA	NA	False	NA	NA	NA	29779809	29821751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481_29820878_29821467
4483	chr10	+	5318	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	4	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	331.827747452257	8	66	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTATTGCAAAAATGTG	NA	False	NA	NA	False	NA	NA	NA	21171920	21244781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184929_21184993_21212865_21212975_21217612_21217879_21218297_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
4484	chrX	-	5101	23	NNC	ENSMUSG00000031095.16	novel	3090	23	NA	NA	25	1742	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	454.3052183334	1	188	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAATTCACATTTGACAA	NA	False	NA	NA	False	NA	NA	NA	37665035	37620408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641259_37641363_37650485_37650602_37652539_37653081_37653809_37653984_37661280_37661356_37664956
4485	chr10	+	4639	22	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	0	-25	intron_retention	FALSE	canonical	3	23	junction_4	48.4901748002025	5	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATAAAAGGATTATGACC	9115	False	NA	NA	False	NA	NA	NA	41352331	41363001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41359628_41359712_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
4487	chr4	+	3330	15	ISM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	5445	867	5445	396	3prime_fragment	FALSE	canonical	3	463	junction_7	96.1621982243903	45	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTCTATAAATTTTGTG	5359	False	NA	NA	False	NA	NA	NA	40976350	41013004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
4488	chr15	-	1704	8	Antisense	novelGene_ENSMUSG00000022385.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	271	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGGTGGTCTGGAGGTC	NA	False	NA	NA	False	NA	NA	NA	85760774	85737156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_85737166_85751680_85751801_85752878_85753258_85755708_85755780_85757837_85758076_85759173_85759415_85759731_85759949_85760345
4489	chr9	+	3875	19	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	10	2	intron_retention	FALSE	canonical	3	473	junction_4	39.464783488605	3	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCCTCTGGCGTCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	108385279	108393130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108386424_108386639_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
4490	chr4	+	2486	5	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	42.6526669740592	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAAGTTTGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	147637731	147669647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147661481_147661587_147665698_147665826_147667290_147668663_147668917
4491	chr2	-	3047	8	NIC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-10	intron_retention	FALSE	canonical	3	11792	junction_6	876.467702002225	15	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCTGTGTAACTAGTGCT	3759	False	NA	NA	False	NA	NA	NA	154734728	154713347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
4492	chr4	+	3721	7	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-8	-286	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	67.6060894693173	1	171	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCATTTTGTATATTTA	NA	False	NA	NA	False	NA	NA	NA	145397246	145430725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422720_145422810_145425813_145425941_145426837_145426909_145427474_145429342_145429423
4493	chr5	+	3928	18	NNC	ENSMUSG00000028999.16	novel	3298	15	NA	NA	0	1177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	31.983343415837	304	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCTGGAAGATTTCTA	NA	False	NA	NA	False	NA	NA	NA	23992718	24026544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016841_24020649_24020865_24021736_24021918_24022032_24022152_24024385_24025640_24025880_24026118_24026282_24026398_24026461
4494	chr2	-	4678	26	NNC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_12	115.773959075433	437	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	488	False	NA	NA	False	NA	NA	NA	119617994	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603714_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617915
4495	chr6	-	3945	21	ISM	ENSMUSG00000053470.14	ENSMUST00000167220.4	4853	26	12183	67	894	-4	3prime_fragment	FALSE	canonical	3	176	junction_18	107.478125681461	1	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTCGCTGTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	71597487	71566024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427
4497	chr9	-	4156	21	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	-31	intron_retention	FALSE	canonical	0	0	junction_3	65.6067641329764	48	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAACTGAAATAAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	61854019	61824592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61827240_61828300_61828529_61831182_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
4499	chr19	-	3380	20	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	277.113974971768	5	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576825	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40538774_40538838_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
4500	chr11	-	4425	24	FSM	ENSMUSG00000004040.17	ENSMUST00000127638.8	4516	24	91	0	30	0	multi-exon	FALSE	canonical	3	387	junction_2	54.0525544164325	458	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCAGTGGGGGCTGGCTGG	NA	False	NA	NA	False	NA	NA	NA	100830275	100777635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
4501	chr19	-	3446	19	FSM	ENSMUSG00000025007.14	ENSMUST00000025979.13	3527	19	81	0	0	0	multi-exon	FALSE	canonical	3	945	junction_12	98.5252364738204	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576826	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
4502	chr18	+	4611	16	FSM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	-11	11	-11	-11	multi-exon	FALSE	canonical	3	189	junction_13	15.4033185457622	446	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGCATAATTGCTACCT	4731	False	NA	NA	False	NA	NA	NA	90528266	90561380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
4503	chr2	+	3304	7	FSM	ENSMUSG00000027405.17	ENSMUST00000161543.2	2960	7	-19	-325	-3	1	multi-exon	FALSE	canonical	3	1993	junction_1	225.275695291101	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116346	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119891_130120075
4504	chr3	+	3484	9	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-13	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	320.184614714699	1	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAAATTGCTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	105866810	105877075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
4505	chr4	-	2768	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-1	-357	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	679.127424415882	42	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTGAAGAGTGAATTACC	1	True	NA	NA	False	NA	NA	NA	43000434	42980319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980517_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
4507	chr1	+	4817	7	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	4	-13	intron_retention	FALSE	canonical	3	62	junction_1	24.8288586572606	46	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTCAGAAAGTTAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	173248167	173293585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173248253_173255324_173255465_173280393_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
4508	chr11	-	3221	28	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	371.73174244365	1292	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTTGGTTTGCTGC	8466	False	NA	NA	False	NA	NA	NA	102771793	102729302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737533_102738892_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
4509	chrUn_JH584304v1	-	2536	8	Intergenic	novelGene_4628	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_7	289.381536158387	4	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTCGAGAGAATGGCCAA	NA	False	NA	NA	False	NA	NA	NA	61455	52206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591_59774_61381
4510	chrX	+	2534	15	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	2	66	junction_9	957.020674504251	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-57	True	NA	NA	NA	74139667	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74139734_74140238_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
4511	chrX	+	3457	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	77	474	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	926.45241647912	1	108	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCCAATAAAAGGATAATT	NA	False	NA	NA	False	NA	NA	NA	20529213	20548918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537610_20537697_20537953_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
4512	chr8	+	3124	15	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	417.867307568675	552	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8846	False	NA	NA	False	NA	NA	NA	120637571	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321_120683530_120683663
4513	chr4	+	5745	9	FSM	ENSMUSG00000007613.16	ENSMUST00000007757.15	5756	9	4	7	4	-7	multi-exon	FALSE	canonical	3	114	junction_2	37.2623721064561	166	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCAATGGCAACATTCTT	4	False	NA	NA	False	NA	NA	NA	47353225	47414924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_47353397_47383748_47383995_47393246_47393490_47396354_47396586_47402802_47402971_47403369_47403527_47405528_47405654_47406921_47407053_47410651
4514	chr8	+	3202	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	65	7	22	-2	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	1568	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAAGCTGTGTTTCTTG	8892	False	NA	NA	False	NA	NA	NA	120637617	120684292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
4515	chr11	-	3565	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	-15	0	intron_retention	FALSE	canonical	2	47	junction_3	618.964906562202	51	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96713566	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96713462
4516	chr1	+	3533	12	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	-15	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	691.888205750176	1	88	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCTAATAGCACCCCAATA	868	False	NA	NA	False	NA	NA	NA	58432267	58446472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437012_58438168_58438258_58439237_58439308_58439955_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
4517	chr12	-	3214	2	Antisense	novelGene_ENSMUSG00000021908.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTAGTCTGGCCCCGCGAC	10016	False	NA	NA	False	NA	NA	NA	119228024	119224697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_119226942_119227054
4518	chr19	-	2373	19	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	52	1147	0	-1147	5prime_fragment	FALSE	canonical	3	1448	junction_13	140.273366267266	16	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGACATGTCCACGGTAAG	3918	False	NA	NA	False	NA	NA	NA	5345431	5325106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
4519	chr18	+	3151	3	FSM	ENSMUSG00000057561.11	ENSMUST00000237478.2	2165	3	-28	-958	15	-4	multi-exon	FALSE	canonical	3	27	junction_1	841.5	174	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTAAATGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730836	46743274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46731224_46731707_46731768_46740570
4520	chr11	-	3280	13	NIC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	3	239	junction_2	423.763495360325	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	9452	False	NA	NA	False	NA	NA	NA	106606192	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
4521	chrX	+	2598	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	206	0	7	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	17	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-59	True	NA	NA	NA	74139665	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
4523	chr13	-	3813	1	Intergenic	novelGene_1548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	130	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTATTGTTGTGACAC	NA	False	NA	NA	False	NA	NA	NA	113858952	113855139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_113855100_113859000
4525	chr12	+	5146	20	Antisense	novelGene_ENSMUSG00000020964.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	23	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCGCCCCTTCCCAGGC	NA	False	NA	NA	False	NA	NA	NA	91773815	91815915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_91776828_91778650_91778779_91780604_91780777_91781390_91781467_91781746_91781916_91782541_91782689_91782994_91783085_91784055_91784121_91784993_91785070_91786812_91786887_91790309_91790363_91791591_91791749_91792070_91792155_91793279_91793341_91793427_91793485_91797462_91797624_91798342_91798452_91808395_91808629_91809999_91810040_91815733
4526	chr3	+	2769	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-6	-634	-3	-343	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	1965	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTAACTTTCTACTTGT	4853	False	NA	NA	False	NA	NA	NA	34074250	34124128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
4528	chrX	-	3894	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	140.432799209266	149	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800281	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149767564_149768501_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
4529	chr11	-	1501	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTTTGAGCCCGACTCG	5951	False	NA	NA	False	NA	NA	NA	120655240	120653739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120653700_120655200
4530	chr18	-	2768	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	-4	-228	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2102.6381048578	9	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGATCTCCTTTGTG	195	False	NA	NA	False	NA	NA	NA	35087414	35070694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072399_35072491_35073302_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
4531	chr15	-	3168	18	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	19	280	intron_retention	FALSE	canonical	3	2899	junction_10	221.796393429668	14	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGTGTCTAAGGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	11399732	11383810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
4532	chrX	+	5222	6	NIC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1444	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	60.7302231183124	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAATTGCCCCTTCACT	9794	False	NA	NA	False	NA	NA	NA	134696892	134704216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_134697086_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
4533	chr1	-	3417	10	Antisense	novelGene_ENSMUSG00000051223.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	83	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAATACAGTCTTGAAAC	NA	False	NA	NA	False	NA	NA	NA	58446502	58436882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_58437008_58438161_58438253_58439232_58439303_58439863_58440000_58440270_58440391_58440510_58440676_58442050_58442196_58442779_58442911_58443388_58443513_58444192
4534	chr9	+	4252	22	NNC	ENSMUSG00000042557.15	novel	5206	22	NA	NA	-1	-226	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	82.2214806609937	3	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATGTGCTAGCATAACT	NA	False	NA	NA	False	NA	NA	NA	56983658	57035422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56983915_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431_57034699_57035319
4535	chr17	+	3109	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	199	-25	-11	25	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	2331	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAGAAAATAGGTAATAG	4860	False	NA	NA	False	NA	NA	NA	87979956	88031166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
4536	chr16	-	4221	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	13	0	13	0	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	899	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTTCCCTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	43959655	43905764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
4538	chr11	+	4275	28	Antisense	novelGene_ENSMUSG00000104854.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	140	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCAGCAGCCGGGGATC	NA	False	NA	NA	False	NA	NA	NA	100367183	100418695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100368171_100368848_100368917_100369152_100369237_100370009_100370119_100372197_100372349_100372522_100372672_100372968_100373125_100374533_100374627_100375423_100375559_100383337_100383444_100384365_100384435_100384702_100384903_100386682_100386797_100389020_100389180_100389446_100389592_100395007_100395124_100395683_100395835_100403700_100403819_100405100_100405163_100405787_100405929_100406731_100406846_100407600_100407738_100409918_100409995_100410440_100410633_100411119_100411178_100412805_100412927_100414258_100414446_100418618
4539	chr4	-	2649	2	ISM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	26692	-2	26680	0	3prime_fragment	FALSE	canonical	3	457	junction_1	0	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	2382	False	NA	NA	False	NA	NA	NA	147700273	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_147698506_147699736
4540	chr6	-	3189	20	FSM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	11	13	11	6	multi-exon	FALSE	canonical	3	25	junction_5	195.368477767687	427	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGGGCTGACTGGTTT	7867	False	NA	NA	False	NA	NA	NA	124806436	124791994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
4542	chr11	+	5331	10	NNC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	201.338545431676	93	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	88890277	88911119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907157_88910662_88910707
4543	chr3	-	2341	2	Antisense	novelGene_ENSMUSG00000105852.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACTGTAAACTGAGACAG	NA	False	NA	NA	False	NA	NA	NA	105876673	105873595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_105873742_105874478
4545	chr2	-	5589	8	NNC	ENSMUSG00000061411.13	novel	5610	8	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	38.4144955633646	207	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAGCTTCGACTATGTC	NA	False	NA	NA	False	NA	NA	NA	153286387	153249380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260070_153262469_153262730_153278125_153278268_153286276
4546	chr11	-	1827	10	NIC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-21	intron_retention	FALSE	canonical	3	9657	junction_9	1387.20502369973	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTACTTGGAAACTGC	NA	False	NA	NA	False	NA	NA	NA	69563141	69557783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
4547	chr1	+	3063	12	NIC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_8	287.720939180615	24	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406728	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93431156_93431241_93433265_93433324_93434684_93434805_93435434
4548	chr11	-	3309	10	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	31	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1666.07674745045	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTAAGTGAAATTGTAC	8994	False	NA	NA	False	NA	NA	NA	106679980	106672375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106677823_106677901_106679098_106679286_106679841
4549	chr5	+	3721	4	Intergenic	novelGene_782	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	38	junction_1	30.554141381416	133	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGTTCGTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	104870704	104900353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104870864_104895041_104895169_104895405_104895467_104896979
4550	chr6	-	2318	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	769.595917701757	2	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCATGTTGTTTGCCTT	8955	False	NA	NA	False	NA	NA	NA	47790299	47773081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778011_47780364_47780524_47780638_47780845_47783435_47783579_47783939_47784146_47785108_47785278_47790150
4551	chr14	-	5472	30	NIC	ENSMUSG00000025280.9	novel	4687	31	NA	NA	4	-1	intron_retention	FALSE	canonical	3	105	junction_22	15.2934824817936	16	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATTAAGTGTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	24537116	24498764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_24499291_24500762_24500896_24502260_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
4552	chr4	-	3680	14	NIC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	1	-6	intron_retention	FALSE	canonical	3	774	junction_11	207.002729879378	263	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAACAAAGCCCTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	116484693	116458254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
4553	chr19	-	4631	23	NIC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	-25	-12	combination_of_known_splicesites	FALSE	canonical	3	20	junction_4	175.242830343432	29	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGAACTCGGTCTGCGCT	NA	False	NA	NA	False	NA	NA	NA	37340035	37246153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
4554	chrX	-	4165	20	FSM	ENSMUSG00000036916.14	ENSMUST00000072292.12	4045	20	-127	7	-75	-6	multi-exon	FALSE	canonical	3	45	junction_17	15.8598431908636	452	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTACAGATTGCATCATC	NA	False	NA	NA	False	NA	NA	NA	47683456	47630508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
4555	chr19	+	3549	22	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-14	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1172.1143540444	83	101	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	652	False	NA	NA	False	NA	NA	NA	10582972	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585352_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599043_10599178_10599349_10599425_10599534_10599653_10599862_10600702_10600803_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
4557	chr19	+	5614	25	NIC	ENSMUSG00000024811.12	novel	6481	27	NA	NA	-3675	-11	combination_of_known_junctions	FALSE	canonical	3	243	junction_16	155.953513150198	813	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTAACTAATAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	36823095	36870866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196_36851417_36852663_36852774_36856634_36856888_36857909_36857993_36859076_36859198_36861465_36861564_36862882_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
4558	chr11	-	4260	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	-34	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1354.38000434115	1	155	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAACTAGATAGTAACA	NA	False	NA	NA	False	NA	NA	NA	100418729	100367202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369157_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384885_100386685_100386783_100389010_100389180_100389446_100389589_100395009_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
4559	chr4	+	3449	16	NNC	ENSMUSG00000028423.16	novel	3617	16	NA	NA	108	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	168.200620952745	31	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	22	True	NA	NA	False	NA	NA	NA	40971013	41012608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41011586
4560	chr1	-	4231	8	FSM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	5	642	5	-642	multi-exon	FALSE	canonical	3	259	junction_7	57.9852197916479	488	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATGTCGGTCTGCCCTGC	8596	False	NA	NA	False	NA	NA	NA	88205350	88190834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
4561	chr19	+	4869	22	FSM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	-50	0	-50	0	multi-exon	FALSE	canonical	3	280	junction_17	34.0452546631592	334	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGTGCTGCCTGTACAT	NA	False	NA	NA	False	NA	NA	NA	37364800	37410307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706
4563	chr3	+	6042	25	NNC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-68	2064	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	126.082947785266	495	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAATTATATTTTCTTAG	NA	False	NA	-59	True	NA	NA	NA	63148889	63291108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63148988_63150636_63150788_63197272_63197448_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
4564	chrX	+	4302	3	FSM	ENSMUSG00000045427.14	ENSMUST00000113202.8	3988	3	-12	-302	-12	0	multi-exon	FALSE	canonical	3	185	junction_2	354.5	13	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	133501994	133507809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133503440_133503512_133503666
4565	chr11	-	4791	18	NIC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	5239	758	intron_retention	FALSE	canonical	3	859	junction_17	102.866527555612	13	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTTAAATGCTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	97073468	97052577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97053508_97054178_97054341_97054739_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450
4566	chr19	-	3269	23	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-22005	-6536	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	82	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGGCCAGGCGCAGAGG	868	False	NA	NA	False	NA	NA	NA	10605023	10582931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592422_10596386_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602204_10602519_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849
4567	chrX	-	2590	9	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-8	-10	intron_retention	FALSE	non_canonical	0	0	junction_2	453.203872445945	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921360	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907582_158910585_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
4568	chr3	+	3497	22	NNC	ENSMUSG00000028034.16	novel	4525	22	NA	NA	2	1	intron_retention	FALSE	canonical	1	16	junction_19	494.995393826344	70	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGAGTGTTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	151916159	151942464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151939239_151939340_151940160_151940208_151941104
4569	chr8	-	3988	22	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	-15	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	151.46425156166	1	71	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCTTACAAAGCTGGCA	8420	False	NA	NA	False	NA	NA	NA	120285195	120234902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257926_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285128
4570	chr13	+	3425	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	50	631	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	725	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTGTGATAATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	97619258	97634146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
4571	chr16	+	2877	21	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	697.305212944805	29	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470430	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480915_20481371_20481491_20481812
4572	chr15	-	4441	37	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-20	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_33	104.790517076383	1	104	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	76491731	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487371_76487501_76487583_76487711_76487846_76487923_76487952_76491534
4573	chr14	-	2388	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-12	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2255.2894752745	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTATTGCTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	36857241	36842778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36843332_36843390_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855167_36855571_36855761_36857151
4574	chr9	-	3959	10	NNC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	13	1	intron_retention	FALSE	non_canonical	0	0	junction_8	75.1720659964381	2	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGTATGGGATCCTTT	NA	False	NA	NA	False	NA	NA	NA	57744031	57697637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741181_57741227_57741516_57743964
4575	chr18	+	3184	22	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-10	-367	intron_retention	FALSE	canonical	0	0	junction_12	215.451495559385	38	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGCCAAGTGTGCTG	9040	False	NA	NA	False	NA	NA	NA	32970353	32999086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983593_32985037_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994102_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
4576	chr5	-	2413	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	58	770	0	-602	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTATACATTTTGCAAAAA	NA	False	NA	NA	False	NA	NA	NA	64126182	64067009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
4580	chr11	-	3344	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9028	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	474.607979679019	407	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTTATCTGCATTCAA	396	False	NA	NA	False	NA	NA	NA	106615248	106545047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552916_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
4581	chr15	-	4078	7	NIC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	1009	junction_2	63.2308381162933	408	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845061	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81835814_81836124_81836241_81836925_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
4583	chrX	+	4286	8	NNC	ENSMUSG00000015291.11	novel	3696	9	NA	NA	12	-3	intron_retention	FALSE	non_canonical	0	0	junction_7	288.287271693372	2	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAAGCCTGGCTCTTTA	6229	False	NA	NA	False	NA	NA	NA	73348884	73355461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73353741_73353995_73354141_73354243_73355075_73355120
4584	chr12	-	4101	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	26	-18	26	18	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	567	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACTGGAACTTTGTTCA	2704	False	NA	NA	False	NA	NA	NA	59058777	59005150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
4585	chr4	-	1597	8	NNC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-17	-24	intron_retention	FALSE	canonical	2	2	junction_1	40.5034642005458	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCAATGTTGCTGGGTG	9	True	NA	NA	False	NA	NA	NA	43010239	43005244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_43005375_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43009280_43009706_43009801_43010001
4586	chr11	-	3901	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1334.3567332545	1	107	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAACAATGGCGTGATGC	NA	False	NA	NA	False	NA	NA	NA	100418698	100367190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100367599_100367776_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405785_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410447_100410632_100411116_100411180_100412807_100412907_100414413_100414448_100418620
4589	chr1	+	3220	29	ISM	ENSMUSG00000026553.18	ENSMUST00000135192.8	4622	33	287	2973	11	3	5prime_fragment	FALSE	canonical	1	295	junction_11	133.104550743284	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAGGAGATTGCAGA	3051	False	NA	NA	False	NA	NA	NA	171910382	171946919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753
4590	chr19	-	3426	21	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	420.411093454966	1	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576825	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539162_40539291_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40569934_40570046_40573933_40574050_40574570_40574637_40576753
4591	chr1	+	3448	14	NNC	ENSMUSG00000047369.18	novel	1999	2	NA	NA	1899	26563	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	87	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCGGCGACTCCGCGCG	NA	False	NA	NA	False	NA	NA	NA	181642921	181669902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_181644582_181644827_181644953_181645053_181645135_181646404_181646573_181647427_181647550_181648232_181648329_181648988_181649192_181653185_181653245_181656275_181656473_181659106_181659299_181659712_181659798_181663622_181663854_181665942_181666122_181669852
4592	chr13	+	3978	32	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	-9	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	636.953939072112	1	83	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGATACTGTGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	49840859	49887731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861954_49863054_49863250_49865225_49865317_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873115_49875614_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883624_49884901_49885038_49885815_49885852_49887250
4593	chr4	-	2676	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_4	198.757861479741	2082	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147727022	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726761
4595	chr10	-	4039	11	FSM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	-2	-1810	-2	1807	multi-exon	FALSE	canonical	3	61	junction_6	215.998518513438	519	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAAACCTTGTTATTTG	4513	False	NA	NA	False	NA	NA	NA	117212836	117183136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
4596	chr14	+	3574	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	116.719089851351	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32043971	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047924_32049054_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
4597	chr3	+	4031	6	NNC	ENSMUSG00000041220.11	novel	5951	5	NA	NA	15	1734	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	160.505451620809	35	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTAATCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	129326049	129430354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708_129428600_129428714
4598	chr1	+	3456	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	51	4	10	3	multi-exon	FALSE	canonical	3	1145	junction_2	98.7764172879585	995	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGCACTGTGGGATTTA	NA	False	NA	NA	False	NA	NA	NA	151220278	151240169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
4599	chrX	-	6363	15	FSM	ENSMUSG00000040363.16	ENSMUST00000065143.14	6839	15	474	2	474	1	multi-exon	FALSE	canonical	3	70	junction_8	40.8733733995767	251	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTGAAGTACTTTGCA	NA	False	NA	NA	False	NA	NA	NA	11946318	11902980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946056
4600	chr17	-	883	2	Antisense	novelGene_ENSMUSG00000068039.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGAGCGATGCCGCGGG	NA	False	NA	NA	False	NA	NA	NA	13137648	13135352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_13135516_13136928
4601	chr19	-	3124	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	627.205012336477	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3897	False	NA	NA	False	NA	NA	NA	5345452	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336388_5336613_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344400_5345064_5345116_5345289
4602	chrX	+	3305	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	56	-904	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	238.93707460299	2	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACCCCAATGAACAATAGC	NA	False	NA	NA	False	NA	NA	NA	150799479	150844786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799543_150809279_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824481_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
4603	chrUn_JH584304v1	-	3391	5	Intergenic	novelGene_4673	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	356.028352101346	11	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACTACCATAGCT	NA	False	NA	NA	False	NA	NA	NA	59707	52677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_56145_58542_58836_59591
4605	chr6	-	2796	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	8	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGTGTCATGTCACAAG	8916	False	NA	NA	False	NA	NA	NA	122719478	122704786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705386_122706303_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
4606	chr3	+	4367	22	FSM	ENSMUSG00000015522.19	ENSMUST00000102749.11	2699	22	5	-1673	3	0	multi-exon	FALSE	canonical	0	0	junction_11	68.4937059524599	304	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	NA	NA	NA	95341703	95404551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
4607	chr5	+	3318	6	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-7	0	intron_retention	FALSE	non_canonical	0	0	junction_4	868.727114806485	3050	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493753	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133
4608	chr7	+	3429	5	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	79	junction_1	294.015730871666	415	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
4610	chr11	+	5844	19	FSM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	-1	5	-1	-5	multi-exon	FALSE	canonical	3	122	junction_1	11.7104996677826	122	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTGACCTCTGCTGGT	NA	False	NA	NA	False	NA	NA	NA	74816647	75055269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_74816830_74819818_74821575_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
4611	chr7	+	3051	14	FSM	ENSMUSG00000038943.17	ENSMUST00000163812.9	3026	14	-28	3	-28	-1	multi-exon	FALSE	canonical	3	144	junction_13	239.092317096712	1746	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTTTTGTCTTCAA	NA	False	NA	NA	False	NA	NA	NA	79944169	79966004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
4612	chr4	+	5669	18	Genic_Genomic	ENSMUSG00000085885.2	novel	680	5	NA	NA	282110	10711	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	77	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGCACCCCGGGACGGAC	NA	False	NA	NA	False	NA	NA	NA	25248626	25281810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_25250691_25251337_25251517_25251931_25252018_25252298_25252382_25254560_25254690_25254770_25254933_25255995_25256118_25259215_25259341_25262208_25262326_25265421_25265603_25267691_25267872_25269031_25270618_25275804_25275934_25277985_25278103_25278602_25278700_25279343_25279373_25280620_25280771_25281677
4613	chr5	+	2488	14	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1829	7236	intron_retention	FALSE	non_canonical	0	0	junction_1	0	260	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGTGCGGCTGAGAACC	681	False	NA	NA	False	NA	NA	NA	138162867	138170144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165027_138165305_138165700_138165810_138165896_138166101_138166235_138166319_138166434_138166593_138166745_138167071_138167210_138167359_138167541_138167610_138167985_138168576_138168659_138169986
4614	chr5	+	2871	8	NNC	ENSMUSG00000029110.14	novel	2944	8	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1101.60230240004	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34494314	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34494442_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574_34509499_34509548
4615	chr3	+	2850	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-1	-351	intron_retention	FALSE	canonical	2	5	junction_1	434.248111362873	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCTGATTTTTAACTTT	4858	False	NA	NA	False	NA	NA	NA	34074255	34124120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34075700_34075800_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
4616	chr17	+	3822	9	NIC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-5	3	intron_retention	FALSE	canonical	3	59	junction_1	758.286874721566	15	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460775	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35470355_35471722_35471833_35471939_35472085_35472182
4618	chr18	+	3049	19	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-42	-3	intron_retention	FALSE	canonical	1	3	junction_10	260.202514909891	132	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	6207	False	NA	NA	False	NA	NA	NA	34758017	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762112_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
4619	chr9	+	4328	26	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	227.327830236423	2	110	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATAGGTTGTATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	44290842	44303653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290897_44291809_44291908_44292112_44292207_44292350_44292430_44292589_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
4620	chr12	+	3009	28	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	274.196249045091	25	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	8019	False	NA	NA	False	NA	NA	NA	76302179	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361752_76364380_76364475_76366354
4621	chr11	+	3124	12	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	-26	-3966	combination_of_known_junctions	FALSE	canonical	3	48	junction_2	2123.77658316656	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAAGAAAACTTCATCTG	NA	False	NA	NA	False	NA	NA	NA	55360484	55391698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_55360628_55376451_55376565_55377943_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
4622	chr1	-	2944	8	FSM	ENSMUSG00000026705.17	ENSMUST00000148952.8	4182	8	63	1175	-6	-1175	multi-exon	FALSE	canonical	3	82	junction_4	11.5387545750335	54	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACCAAATCTAATTTGTG	NA	False	NA	NA	False	NA	NA	NA	160959018	160925189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
4623	chr4	-	5113	23	NIC	ENSMUSG00000029016.14	novel	3306	23	NA	NA	-14	-5	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	23.9994834655159	9	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGACCTTGTCTCCACG	7451	False	NA	NA	False	NA	NA	NA	148123241	148088720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095234_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
4624	chr19	-	2826	19	NIC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-3	9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	537.415261767143	22	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTACTTGGATTTACTAGT	3910	False	NA	NA	False	NA	NA	NA	5345439	5323950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5344326_5344405_5345068_5345116_5345289
4626	chr10	+	4431	26	FSM	ENSMUSG00000005682.10	ENSMUST00000005825.8	4445	26	14	0	14	0	multi-exon	FALSE	canonical	2	78	junction_17	49.8603810655314	328	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	NA	False	NA	NA	NA	128139217	128157222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
4627	chr16	+	2626	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	33	302	-19	-300	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGACTCATACAACGCCAG	NA	False	NA	NA	False	NA	NA	NA	20470434	20481862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
4628	chr15	-	2862	15	NIC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	83	junction_1	1540.43655354909	6012	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	377	False	NA	NA	False	NA	NA	NA	36609217	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36596344_36596762_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
4629	chr5	+	3634	21	NNC	ENSMUSG00000036817.15	novel	3714	20	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	272.860935276562	2	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATGTGCGATTTCAAGT	NA	False	NA	NA	False	NA	NA	NA	139186423	139235547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224612_139224662_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
4630	chr9	+	3459	21	NIC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	965	junction_19	396.045376188133	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	21279298	21316659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
4631	chr5	-	3532	10	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	-9	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	235.668997840636	4	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTTTCTTTGCCAATGT	NA	False	NA	NA	False	NA	NA	NA	4154430	4131142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150229_4150272_4151177_4151355_4152927_4153027_4154133
4633	chr1	+	3121	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	22	-31	0	31	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATAAAGAACCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	85992362	86066904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
4634	chr9	-	4237	23	FSM	ENSMUSG00000032480.18	ENSMUST00000197928.5	4441	23	189	15	-9	-12	multi-exon	FALSE	canonical	3	162	junction_20	135.338876788039	304	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATCCCTTGTGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	109946709	109913402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109946425
4635	chr8	-	3884	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21249	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	143.226661425902	475	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGTGAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	81585876	81491073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496372_81501216_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
4637	chr13	+	5683	19	FSM	ENSMUSG00000038518.16	ENSMUST00000044608.14	5019	19	-21	-643	-21	-2	multi-exon	FALSE	canonical	3	65	junction_1	177.530035712966	12	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTCTGTCTTGTGGG	9912	False	NA	NA	False	NA	NA	NA	44884277	45075114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_44884411_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
4640	chr4	+	4869	4	NIC	ENSMUSG00000054405.15	novel	505	5	NA	NA	-3945	-20	intron_retention	FALSE	canonical	3	2684	junction_3	160.089558268697	8	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTATACCCAAGCCTT	9495	False	NA	NA	False	NA	NA	NA	132270024	132281033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132274020_132277687_132277780_132278845_132278922_132280327
4641	chr11	+	2141	1	Antisense	novelGene_ENSMUSG00000053113.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	293	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGACCATGGCGCACGG	7591	False	NA	NA	False	NA	NA	NA	117856904	117859045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_117856900_117859000
4642	chr5	+	2501	14	FSM	ENSMUSG00000029141.17	ENSMUST00000202950.4	2499	14	-6	4	-6	0	multi-exon	FALSE	canonical	3	47	junction_11	21.8978262140197	209	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTGAGGTGATGATCAT	NA	False	NA	NA	False	NA	NA	NA	31684349	31711382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
4643	chrX	-	3545	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	3231	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	187.082775379643	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149797087	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767577_149768621_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016
4644	chr7	+	4394	12	FSM	ENSMUSG00000031015.9	ENSMUST00000033325.9	4027	12	-8	-359	-8	359	multi-exon	FALSE	canonical	3	251	junction_6	36.1790771003727	417	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTACATGGTCACCAAGAT	NA	False	NA	NA	False	NA	NA	NA	109820909	109883072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
4646	chr14	+	4236	40	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	24	-11	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	167.513152162066	1	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTATTATTCAACATGACT	NA	False	NA	NA	False	NA	NA	NA	47886796	47974003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
4647	chr10	+	3982	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	-73	2	-73	-2	multi-exon	FALSE	canonical	3	1673	junction_5	33.7828943493195	4146	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGAATGCTGCTGCTAC	2213	False	NA	NA	False	NA	NA	NA	79795912	79806035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
4648	chr1	+	4585	11	FSM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	37	4	-6	-4	multi-exon	FALSE	canonical	0	0	junction_1	104.445200942887	15	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTAGAGTCTTGTGTCT	6030	False	NA	NA	False	NA	NA	NA	152830785	152995003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_152830945_152949542_152949632_152950418_152950487_152952654_152952734_152962082_152962210_152964529_152964611_152966242_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313
4649	chr12	+	4416	21	NIC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-11	-3	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	164.86857644803	532	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATAATTGTGTAGTGCAT	3970	False	NA	NA	False	NA	NA	NA	83679014	83729894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
4650	chr11	-	3545	25	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	111	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCAAACACGTGGGCTC	NA	False	NA	NA	False	NA	NA	NA	72341967	72332207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72332402_72332503_72332578_72333215_72333308_72333393_72333468_72333568_72333675_72334296_72334474_72334564_72334737_72334832_72334942_72335503_72335804_72336001_72336110_72336430_72336554_72336715_72336889_72336978_72337082_72337795_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341700
4651	chr11	-	3761	22	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	134	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.812279618292	845	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGACTTTCGTCTGGTC	9141	False	NA	NA	False	NA	NA	NA	102209788	102195392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102195843_102196632_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
4652	chr2	+	3992	4	NNC	ENSMUSG00000095315.3	novel	2159	4	NA	NA	55	1915	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	53.766986979827	3	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTCTTCCATTGTATAA	NA	False	NA	NA	False	NA	NA	NA	150153405	150170847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150153479_150165648_150165749_150165947_150166009_150167089
4653	chr7	-	4465	8	Antisense	novelGene_ENSMUSG00000072244.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	254.397006143339	22	82	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGGTAAAAAGAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103884092	103874711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_103875184_103876011_103876372_103876575_103877582_103879932_103879955_103880992_103881095_103881317_103881345_103881571_103882774_103882818
4654	chr11	+	2785	8	Antisense	novelGene_ENSMUSG00000020740.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGGATGTCCCCTACAG	6786	False	NA	NA	False	NA	NA	NA	115475084	115479784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115476669_115476913_115477023_115477141_115477314_115477822_115478028_115478231_115478545_115478763_115478832_115479140_115479371_115479680
4655	chr6	-	2160	10	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	131	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1300.36591241575	16	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8616	False	NA	NA	False	NA	NA	NA	145021779	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961260_144978556_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
4656	chr14	-	4185	7	NIC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	-152	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	255.074117768847	21	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	47056028	47045605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47055872
4658	chr17	-	3795	14	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	-11	-6	intron_retention	FALSE	canonical	0	0	junction_6	278.942381274352	7	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGAACTGTGGTGGATTTC	NA	False	NA	NA	False	NA	NA	NA	29226897	29189859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29199342_29199497_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
4660	chr4	-	5531	14	NNC	ENSMUSG00000003731.14	novel	5710	14	NA	NA	1067	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	39.900171285836	8	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTGTCTTCTTTGGTT	3630	False	NA	-42	True	NA	NA	NA	129555205	129537777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129540386_129540441_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098
4661	chr11	-	4648	5	FSM	ENSMUSG00000038615.18	ENSMUST00000081775.12	4654	5	2	4	2	-4	multi-exon	FALSE	canonical	3	711	junction_4	320.112870719064	2	120	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCACTTTCTCCCCCCTCT	NA	False	NA	NA	False	NA	NA	NA	96720792	96708243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
4663	chr4	+	4145	16	FSM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	8	4	8	-4	multi-exon	TRUE	canonical	3	214	junction_12	34.6965256025569	427	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACCTGTGTCTTTCCTGT	-28	True	NA	NA	False	NA	NA	NA	33310318	33502610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
4664	chr18	+	4380	15	NNC	ENSMUSG00000024614.8	novel	4611	16	NA	NA	8	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	56.3380829620314	8	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGCATAATTGCTACCT	4800	False	NA	NA	False	NA	NA	NA	90528335	90561380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555311_90558137
4666	chr1	+	3515	15	NNC	ENSMUSG00000026439.15	novel	2456	14	NA	NA	-7095	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	123.434689001834	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	NA	False	NA	NA	NA	132398007	132433397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132398126_132399759_132399806_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
4667	chr2	-	3823	4	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	7	-1	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	430	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGACTTACTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	106804735	106792872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
4668	chr6	-	3713	23	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-8	-70	intron_retention	FALSE	canonical	0	0	junction_1	143.750019762844	3	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAGCACCAAAAAAAAAAAA	-16	True	NA	NA	False	NA	NA	NA	29609641	29540895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541634_29543252_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
4669	chrX	+	2570	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	234	0	2	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-31	True	NA	NA	NA	74139693	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
4671	chrX	+	4214	12	NIC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-39	-14	combination_of_known_junctions	FALSE	canonical	3	111	junction_9	153.898914983368	454	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTACCTGGCAGTTGGT	NA	False	NA	NA	False	NA	NA	NA	158315624	158376063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158350362_158350914_158351011_158357940_158358094_158375066
4672	chr15	-	2999	4	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1037.5311508041	29	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACACAGTGAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	38300945	38294661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296409_38296858_38297772_38297865_38298062_38300802
4673	chr8	+	3918	18	NIC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	2	-20	combination_of_known_junctions	FALSE	canonical	1	6	junction_8	262.064441743434	56	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATACAGAAATTAAAAAAGTT	1908	False	NA	NA	False	NA	NA	NA	106937656	106979406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964590_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
4674	chr10	+	2519	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_13	451.168489499388	4	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTCTTCCCTGAGCCC	1621	False	NA	NA	False	NA	NA	NA	79690498	79700191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698894_79699260
4675	chr16	-	4104	15	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	4	-2	intron_retention	FALSE	canonical	0	0	junction_4	314.472939363368	3	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCATAACTGTATCATTG	8120	False	NA	NA	False	NA	NA	NA	4867717	4831774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4837943_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
4676	chr5	-	3089	13	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-35	-2	intron_retention	FALSE	canonical	3	1644	junction_10	202.138343028289	3	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTGCTTGTTAATAACT	2285	False	NA	-124	True	NA	NA	NA	138170115	138162863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
4677	chr2	-	3077	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	145	-1149	2	-149	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	1423	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTATTTTCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	125700914	125672372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
4678	chr9	+	2733	22	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	38	0	intron_retention	FALSE	canonical	3	468	junction_2	39.6069693127433	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385329	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
4680	chr6	-	4777	25	Antisense	novelGene_ENSMUSG00000107534.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAAAGCCCTCGTCCGCT	NA	False	NA	NA	False	NA	NA	NA	83963853	83891352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83891460_83911928_83911993_83918226_83918264_83919813_83920119_83921589_83921868_83923196_83923344_83924798_83924922_83930063_83930125_83930316_83930367_83931688_83931739_83935160_83935240_83936916_83936949_83938956_83939086_83942506_83942638_83943426_83943469_83944272_83944407_83946095_83946220_83949225_83949263_83953180_83954410_83955001_83955068_83955973_83956890_83958663_83958766_83960955_83961055_83961756_83961876_83963537
4682	chr9	-	3892	22	NIC	ENSMUSG00000032480.18	novel	4441	23	NA	NA	-3	-4	combination_of_known_splicesites	FALSE	canonical	3	14	junction_20	148.196137730021	83	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGAGTGCTGCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	109946482	109913394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944558_109944651_109946425
4684	chr10	+	2812	12	FSM	ENSMUSG00000006498.17	ENSMUST00000057343.16	1765	12	-41	-1006	6	-2	multi-exon	FALSE	canonical	3	18	junction_8	513.000459136617	65	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1567	False	NA	NA	False	NA	NA	NA	79690444	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
4686	chr4	+	5396	5	FSM	ENSMUSG00000028211.12	ENSMUST00000132010.8	5432	5	35	1	32	-1	multi-exon	FALSE	canonical	3	82	junction_4	77.6997425993163	350	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGGAGGATTCTTTTA	0	True	NA	NA	False	NA	NA	NA	11156475	11174378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11167896_11167935_11169709
4687	chrX	+	2565	19	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	816.192706381659	21	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20529169	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541924_20547582_20547754_20548141_20548244_20548347_20548449_20548616
4688	chr4	+	5900	10	FSM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	29	5	20	-5	multi-exon	FALSE	canonical	3	178	junction_2	13.4283650402542	258	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTAACTGTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	140875252	140931368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_140875491_140895023_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
4690	chr13	-	3556	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	28	370	-3	0	multi-exon	FALSE	canonical	3	421	junction_9	46.3947102135844	785	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	59823597	59782809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
4691	chr7	-	2906	22	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	293	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	175.440023409879	4	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28037838	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025450_28030794_28030955_28037776
4692	chr2	-	5757	23	NNC	ENSMUSG00000034032.16	novel	4744	25	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_13	158.055938680159	5	103	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	482	False	NA	NA	False	NA	NA	NA	119618000	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602520_119602968_119603140_119603618_119603754_119603874_119604054_119604271_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614210_119614452_119617895
4693	chr17	-	3157	14	FSM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	77	117	-6	14	multi-exon	FALSE	canonical	3	678	junction_3	53.1740471465247	11	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCATGGGAGAATAAGAATA	NA	False	NA	NA	False	NA	NA	NA	29226892	29189970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
4694	chr18	+	1831	2	ISM	ENSMUSG00000025428.16	ENSMUST00000146869.2	816	4	-581	127	296	-127	intron_retention	FALSE	canonical	3	5332	junction_1	0	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAATCATTTATTTGATG	NA	False	NA	NA	False	NA	NA	NA	77866950	77869462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_77868004_77868684
4695	chrX	+	5394	7	NNC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1431	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.2878456553208	175	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCAGAAATTGCCCCTT	9807	False	NA	NA	False	NA	NA	NA	134696905	134704212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134697086_134697659_134697787_134698301_134698379_134698536_134698614_134698771_134698899_134699132_134699223_134699496
4696	chr10	+	2831	5	NIC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	28	-6	combination_of_known_splicesites	FALSE	canonical	2	29	junction_4	708.003663479222	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41395437	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41404667
4697	chr8	+	3988	13	NIC	ENSMUSG00000031483.9	novel	4838	12	NA	NA	-25	-902	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	118.668627090548	340	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGGTAAAATTTACCAGT	NA	False	NA	NA	False	NA	NA	NA	27513868	27529454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_27513935_27514861_27514956_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
4698	chr3	+	3583	2	Genic_Genomic	ENSMUSG00000039617.9	novel	684	1	NA	NA	-116	4193	multi-exon	FALSE	non_canonical	0	0	junction_1	0	196	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	21103612	21108605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_21105396_21106805
4699	chr8	-	3724	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21249	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.13938165239	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	81585876	81491062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492013_81492252_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
4700	chr3	+	3805	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-15	3	intron_retention	FALSE	non_canonical	0	0	junction_7	279.992201057567	106	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965648	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102973437_102974048
4701	chr6	+	4009	29	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	-11	-10	combination_of_known_splicesites	TRUE	canonical	0	0	junction_13	79.1332188561202	1	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACGCTTCACAGAGGTT	NA	False	NA	NA	False	NA	NA	NA	116185155	116239616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
4703	chr7	+	3444	12	ISM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	28147	0	16355	0	3prime_fragment	FALSE	canonical	3	710	junction_2	96.4500470204547	2	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	109645627	109655816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
4704	chr6	+	4241	29	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	6	2	intron_retention	FALSE	canonical	3	101	junction_25	57.5563942616992	78	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGTTTGTTCTTACTTA	NA	False	NA	NA	False	NA	NA	NA	116185061	116239628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233576_116233790_116235602_116236218_116237451_116237630_116239295
4705	chr4	-	3493	21	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	17	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	280.270405144746	5	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATTCTTGGTCTCCGT	5	True	NA	NA	False	NA	NA	NA	41275099	41194320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195670_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
4706	chr9	-	935	4	NIC	ENSMUSG00000097195.11	novel	809	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	319.66545011934	12118	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	88404941	88403104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536
4707	chr13	+	3479	8	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	2271	28584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATGGAAGATTACCCGG	NA	False	NA	NA	False	NA	NA	NA	59782809	59812320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59785216_59786118_59786226_59787932_59788156_59790056_59790201_59792905_59793040_59797378_59797480_59798509_59798564_59812010
4708	chr18	+	3617	12	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	-7	251	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	766.42985802533	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTCAACTAGAATGAGCC	421	False	NA	NA	False	NA	NA	NA	61688337	61723383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496_61721414_61721593_61721699_61722278
4709	chrX	+	2778	15	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	43	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	947.11987690286	12	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74139502	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74139734_74140238_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
4713	chr2	+	3630	20	NNC	ENSMUSG00000026790.20	novel	3082	21	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	362.581655718697	1	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7222	False	NA	NA	False	NA	NA	NA	29779825	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783049_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794115_29804249_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
4714	chr6	-	3241	21	NNC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	4	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	346.143795986581	6	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGGGCTGACTGGTTT	7936	False	NA	NA	False	NA	NA	NA	124806367	124791994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802138_124803261_124803388_124804977_124805103_124806247
4715	chr13	+	3425	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	-139	178	-54	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	1087	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120151860	120169618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
4717	chr13	-	3544	16	NIC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	6	-145	intron_retention	FALSE	canonical	3	688	junction_5	49.029877512481	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGACTTACATTTTG	NA	False	NA	NA	False	NA	NA	NA	9046080	9022660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
4718	chr15	+	3720	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	133	1	42	-1	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	1	135	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTAATGTTGCAGTTTA	NA	False	NA	-52	True	NA	NA	NA	101982340	102005607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
4720	chr15	+	4732	8	NNC	ENSMUSG00000008690.16	novel	3223	20	NA	NA	-2695	-119	intron_retention	FALSE	non_canonical	0	0	junction_3	389.901400408894	3	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAACCCACGCCACAAC	7851	False	NA	NA	False	NA	NA	NA	89251199	89256910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_89253659_89253818_89253886_89254010_89254119_89254434_89254512_89254597_89254692_89254806_89254879_89254955_89255197_89255296
4721	chr4	-	1924	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	63	2420	-58	-3	multi-exon	FALSE	canonical	3	482	junction_1	226.647613038099	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGCCCCATGCTGGTGG	2555	False	NA	NA	False	NA	NA	NA	129229100	129203312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
4722	chr17	+	2981	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	459.18855967166	74	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4891	False	NA	NA	False	NA	NA	NA	87979987	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87990030_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
4723	chrX	+	3505	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	-1	-2154	-1	2154	mono-exon	FALSE	NA	NA	NA	NA	NA	1	89	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32943122	32946627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_32943100_32946600
4724	chr19	-	3117	22	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	612.612486778482	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3912	False	NA	NA	False	NA	NA	NA	5345437	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343195_5343249_5343348_5344326_5344405_5345072_5345116_5345289
4725	chr7	-	4717	33	NNC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	9	-5	at_least_one_novel_splicesite	FALSE	canonical	1	24	junction_10	43.1181946623174	256	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGGAACCTTCCCTGT	NA	False	NA	NA	False	NA	NA	NA	29979835	29939572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29940140_29940655_29941310_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943332_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
4726	chr2	+	3025	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-3	intron_retention	FALSE	canonical	3	1993	junction_1	207.851772604902	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATAGTATGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119891_130120075
4727	chr4	-	5646	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-12	-5	intron_retention	FALSE	canonical	1	19	junction_18	118.034272591366	497	93	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGACTCCTCAGGGGT	NA	False	NA	NA	False	NA	NA	NA	115980868	115951465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
4728	chr11	+	4747	16	NNC	ENSMUSG00000020463.16	novel	5125	16	NA	NA	90	0	intron_retention	FALSE	canonical	3	27	junction_4	78.3308084699472	226	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACGTGTTTTAATCACTA	NA	False	NA	NA	False	NA	NA	NA	29122979	29170797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138287_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
4731	chr11	+	2330	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	49	4324	16	-4324	multi-exon	FALSE	canonical	3	6361	junction_7	586.595613027527	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGGGGGAACTGTAGA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
4733	chr4	-	8339	15	NNC	ENSMUSG00000034636.10	novel	8691	14	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.3031454194666	109	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAAGTGTGGTCTACTTT	NA	False	NA	NA	False	NA	NA	NA	108158300	108086926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108087788_108088140_108093392_108094538_108094637_108099017_108099071_108099196_108099395_108101922_108101971_108102072_108102235_108107691_108107743_108107970_108108071_108109348_108109414_108112397_108112575_108117146_108117288_108123014_108123770_108129414_108129581_108158087
4734	chr15	+	3698	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	152	4	61	-4	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	2	134	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGGTTAATGTTGCAGT	NA	False	NA	-33	True	NA	NA	NA	101982359	102005604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
4736	chr15	-	3117	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-149	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_11	939.498754508074	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283944	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81280305_81280376_81283685
4737	chr5	+	3365	11	NNC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	13674	23125	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	11	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGGGCCCTTCACACGC	NA	False	NA	NA	False	NA	NA	NA	4131146	4154435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_4131158_4131323_4133307_4136462_4136636_4137782_4137874_4141844_4141957_4142392_4142507_4149122_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
4738	chr18	+	2868	19	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-43	0	intron_retention	FALSE	canonical	0	0	junction_13	260.453995843061	7	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6206	False	NA	NA	False	NA	NA	NA	34758016	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763127_34763351_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
4740	chr10	-	3074	16	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	18	1026	combination_of_known_junctions	FALSE	canonical	3	239	junction_15	561.749291647677	26	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAAATTGGTACTTCAA	NA	False	NA	NA	False	NA	NA	NA	116899262	116885879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
4741	chr2	+	4262	36	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_31	64.100711575534	412	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	180961516	180998409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
4742	chr15	-	2988	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	357	1	-92	-1	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	2	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGACCTTCCCCCATT	NA	False	NA	NA	False	NA	NA	NA	81283887	81247870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
4743	chr15	+	3245	20	FSM	ENSMUSG00000008690.16	ENSMUST00000036987.12	3223	20	3	-25	3	25	multi-exon	FALSE	canonical	1	145	junction_1	244.22211859964	199	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTAAGAGGTGATCCTTT	NA	False	NA	NA	False	NA	NA	NA	89239924	89257054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
4744	chr17	-	3084	7	NNC	ENSMUSG00000024097.12	novel	1921	7	NA	NA	0	3	intron_retention	FALSE	canonical	3	12	junction_3	809.175025703477	31	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATTCAGTCTTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	80514734	80507505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511631_80511662_80511741_80512868_80513276_80513458_80514603
4747	chr7	+	657	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	-66	2	-66	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	328	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTGGTCTGGATCTGGT	NA	False	NA	NA	False	NA	NA	NA	24583991	24589229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
4748	chr4	+	3393	11	NIC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	44	-373	intron_retention	FALSE	canonical	3	1470	junction_10	127.172953099313	17	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGCACGGAGTCTCG	899	False	NA	NA	False	NA	NA	NA	129083738	129113027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129109213_129110470_129110613_129112223
4749	chr19	-	2922	11	NNC	ENSMUSG00000013662.7	novel	3771	10	NA	NA	-4	264	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	173.498731983839	60	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGCACTGAATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	32689735	32649957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32685471_32685539_32689665
4750	chr5	-	2514	16	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	26	4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_15	732.950700176273	12	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTTAATAACTCTGTAG	2349	False	NA	-60	True	NA	NA	NA	138170051	138162857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169071_138169270_138169987
4751	chr18	+	3211	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	5	-5	intron_retention	FALSE	canonical	0	0	junction_1	160.843906930584	419	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATCAGTGGGTTCTTTT	9055	False	NA	NA	False	NA	NA	NA	32970368	32999448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970658_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
4753	chr18	-	5598	21	NNC	ENSMUSG00000048799.9	novel	4554	21	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_19	71.2789590271912	179	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTTGTGTGGTCGGTCT	NA	False	NA	NA	False	NA	NA	NA	53877673	53814798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53874275_53877353_53877420_53877559
4754	chr4	+	2296	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	1982	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.762366220348	1	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGGGGGTTGGTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	147576855	147599925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597327_147597998_147598436_147599020
4755	chr5	-	4148	11	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	660.859054564587	2	112	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTATGTCCCTAA	NA	False	NA	NA	False	NA	NA	NA	92231573	92200021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204253_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231413
4756	chr8	+	2562	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	452.387308999435	82	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGTGCTGTGTGAATAC	NA	False	NA	NA	False	NA	NA	NA	75836196	75854320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847463_75847822_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
4758	chr10	+	2650	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	1	-2	intron_retention	FALSE	non_canonical	0	0	junction_14	446.012812115783	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1609	False	NA	NA	False	NA	NA	NA	79690486	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699101_79699332
4759	chr18	-	3247	16	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	13	-248	intron_retention	FALSE	non_canonical	0	0	junction_3	2178.00899498194	5	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAATAAAATTCTGAAA	212	False	NA	NA	False	NA	NA	NA	35087397	35070714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072399_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079712_35080963_35081071_35081158_35081233_35082065_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
4760	chr5	-	3290	13	Intergenic	novelGene_794	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256652	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_108208730_108217027_108217228_108228688_108228888_108229000_108229092_108234865_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248857_108254858
4761	chr14	+	4632	25	NIC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	-3	0	intron_retention	FALSE	canonical	2	9	junction_1	119.911425644098	62	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTCATTACTCGCG	NA	False	NA	NA	False	NA	NA	NA	20724400	20744918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20724457_20725798_20725928_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
4762	chr2	-	2638	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	513.778707227149	6	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGCACAGGATGGCTAAAA	NA	False	NA	NA	False	NA	NA	NA	154916367	154901249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907337_154907607_154909242_154909319_154910747_154910939_154915580_154915627_154916284
4763	chr5	-	4863	15	NIC	ENSMUSG00000029472.14	novel	3376	16	NA	NA	21	-8	intron_retention	FALSE	canonical	3	1728	junction_3	192.558710898409	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGATCAGTTTGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	122959312	122925801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
4765	chr6	-	3392	18	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-1040	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_17	165.409923845501	61	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6192359	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6191908
4766	chr14	+	4014	15	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	8412	-6	intron_retention	FALSE	non_canonical	0	0	junction_14	141.443000706926	4	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGCCCTGCTGGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	32055760	32070102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32068780_32069475
4767	chr13	+	2565	5	Fusion	ENSMUSG00000113626.2_ENSMUSG00000074867.5_ENSMUSG00000113566.2	novel	419	3	NA	NA	46	514	multi-exon	FALSE	non_canonical	0	0	junction_4	55.0062496449267	3	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAAGCTTGTGTGTGGACC	NA	False	NA	NA	False	NA	NA	NA	61952125	62321747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_61952220_62254561_62254689_62317567_62317629_62318963_62321192_62321692
4768	chr15	+	3484	17	FSM	ENSMUSG00000022394.15	ENSMUST00000023029.15	3487	17	0	3	0	-3	multi-exon	FALSE	canonical	3	631	junction_15	40.713125570877	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGATGATATCAGATG	NA	False	NA	NA	False	NA	NA	NA	81548089	81572513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
4769	chr14	-	2501	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-46	733	-26	-1	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	8	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTATTGCTGTACT	NA	False	NA	NA	False	NA	NA	NA	36857255	36842781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
4770	chr5	-	2632	5	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23744	45584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAATTAGTCCCTCAAG	NA	False	NA	NA	False	NA	NA	NA	108256652	108208647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108220436_108220520_108221170_108221328_108252285_108252396_108254452
4771	chr8	+	3871	16	NIC	ENSMUSG00000005410.7	novel	2604	17	NA	NA	-21	-338	intron_retention	FALSE	canonical	3	635	junction_1	276.508902810259	4	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAAATATTTAAGTATTT	NA	False	NA	NA	False	NA	NA	NA	75836175	75854729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75851572_75852864_75852993_75853850
4772	chr19	-	3532	20	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	364.286020469001	16	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTGCACAGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	40576806	40538705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40569934_40570046_40573933_40574050_40574570_40574637_40576753
4773	chr9	+	3010	23	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	165.912229111042	36	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	98445769	98470435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464837_98464890_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
4774	chr4	+	2994	6	Antisense	novelGene_ENSMUSG00000028907.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGCTTGCAATGCAGCCTA	NA	False	NA	NA	False	NA	NA	NA	124573504	124587393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_124575647_124575887_124576300_124577027_124577141_124577544_124577649_124579881_124579944_124587232
4775	chr6	-	2689	9	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	2306	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3844.06395465788	2	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	NA	False	NA	NA	False	NA	NA	NA	122716915	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705252_122705834_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713567_122714054_122714258_122716791
4776	chr1	+	3188	2	FSM	ENSMUSG00000053332.14_ENSMUSG00000064440.3_ENSMUSG00000064816.3_ENSMUSG00000065160.3	ENSMUST00000159037.2	636	2	-2552	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_1	0	119	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160865843_160866026
4777	chr7	-	3414	25	NIC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-4987	0	intron_retention	FALSE	canonical	3	933	junction_11	131.219255658442	30	27	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44192829	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664
4778	chrX	-	4962	16	FSM	ENSMUSG00000031278.13	ENSMUST00000112904.8	4959	16	-6	3	-6	-3	multi-exon	FALSE	canonical	3	35	junction_14	37.5140862432589	219	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCAGTTTGTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	141173506	141100991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134615_141143382_141143433_141173300
4779	chr6	+	3151	8	NNC	ENSMUSG00000029767.17	novel	3229	7	NA	NA	17	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	324.23259476833	1398	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGGCTTATGTGTCTTT	16	False	NA	NA	False	NA	NA	NA	29348134	29376667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397_29374679_29374719
4780	chr11	+	4450	23	NNC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	-10	-5	intron_retention	FALSE	non_canonical	0	0	junction_5	59.9360540785961	351	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCAAGCTGTTTATTG	968	False	NA	NA	False	NA	NA	NA	101443673	101472772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450413_101453113_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
4781	chr10	+	2849	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	1	-2	intron_retention	FALSE	non_canonical	0	0	junction_9	576.471382149947	4	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1622	False	NA	NA	False	NA	NA	NA	79690499	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695523_79695614_79695790_79695950_79696029_79696657_79696804_79697843_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
4782	chr19	-	3794	18	NIC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	0	-3	intron_retention	FALSE	canonical	3	1062	junction_8	85.3343110166022	902	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGCACAGTTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	40576828	40538703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
4783	chrX	-	3182	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.794742517923	5	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231323	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086443_23086499_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
4784	chr19	-	3421	18	NIC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_17	265.434357090177	934	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576867	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40576753
4786	chr3	-	4201	7	NIC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	4	-6	intron_retention	FALSE	canonical	2	5	junction_6	1008.23724060031	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGCACAAGGCTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	108352510	108333933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108335648_108335921_108336052_108336556_108336779_108338780_108340478_108341364_108341524_108343201_108343283_108352312
4787	chr1	+	2327	3	Antisense	novelGene_ENSMUSG00000026235.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATCCATAAGGTAGTTA	NA	False	NA	NA	False	NA	NA	NA	77343836	77349626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77345024_77345247_77346307_77349545
4788	chr15	-	2680	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-86	-77	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	711.346005041772	240	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAAAGGGGCTTTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	81283881	81247946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248959_81249184_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
4789	chr6	+	2141	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	70	0	70	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	53	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684596	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
4790	chr2	+	4747	8	ISM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	268	3	37	-3	3prime_fragment	FALSE	canonical	3	1115	junction_2	75.3408580914711	5	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTGTGTTTATTTTTG	8837	False	NA	NA	False	NA	NA	NA	72306770	72317234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
4791	chr6	-	4482	32	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	128.417916547196	2	95	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3540	False	NA	NA	False	NA	NA	NA	125168519	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161023_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
4792	chr12	+	3279	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	-18	0	-18	0	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	119	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	NA	False	NA	NA	NA	102724207	102743966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
4794	chr11	-	3120	24	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	838.506314418365	53	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418708	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100367463_100372557_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
4795	chr11	-	3574	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.1472239653	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	NA	False	NA	NA	NA	40624275	40592221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
4796	chr1	+	3326	8	NIC	ENSMUSG00000026254.18	novel	1119	7	NA	NA	6	-245	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	1014.93826091511	412	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCAAGAGAGCAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	87142013	87167965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87160124_87160204_87165567
4797	chr2	+	3559	22	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	174.878902059361	643	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428734	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453547_118453667_118454761_118454812_118457344_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
4798	chr2	-	5081	12	FSM	ENSMUSG00000041219.15	ENSMUST00000102545.8	4958	12	-69	-54	-64	0	multi-exon	FALSE	canonical	3	279	junction_2	47.4803134497789	301	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTGTCTGCGTGTTGTA	5948	False	NA	NA	False	NA	NA	NA	113679070	113661836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
4799	chr11	-	5729	6	Fusion	ENSMUSG00000035208.17_ENSMUSG00000069793.13	novel	3862	6	NA	NA	-10	-3	multi-exon	TRUE	non_canonical	0	0	junction_5	18.9251155874938	150	16	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTGAATTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	82910944	82869218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_82872813_82872979_82873704_82875382_82875518_82878064_82879135_82881767_82881872_82910842
4800	chrX	-	2782	2	Genic_Genomic	ENSMUSG00000083327.2	novel	2406	1	NA	NA	-232	209	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAGAGTGAATTACCAG	NA	False	NA	NA	False	NA	NA	NA	103392072	103389225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_103390471_103390535
4802	chr17	+	3008	17	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	444.655445085012	23	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4894	False	NA	NA	False	NA	NA	NA	87979990	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993772_87993813_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
4803	chr3	+	3266	11	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	1	-395	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	390.775395847794	1857	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAAATCTGCTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	105866824	105876681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105872619_105872739_105873080_105873190_105873672_105873742_105874478
4804	chr11	+	3146	15	NIC	ENSMUSG00000017421.19	novel	2898	17	NA	NA	-6	-838	intron_retention	FALSE	canonical	1	5	junction_14	416.675894455641	3	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAGCACACACTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	80274122	80294809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215_80286400_80286617_80286702_80289241_80289297_80293471
4805	chr9	+	3395	21	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	1	intron_retention	FALSE	canonical	3	468	junction_2	40.5567195418959	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCTCTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	108385257	108393136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
4807	chr2	+	1866	2	FSM	ENSMUSG00000038900.18_ENSMUSG00000065124.3	ENSMUST00000133842.2	756	2	-17	-1093	-5	-12	multi-exon	FALSE	canonical	3	6045	junction_1	0	17	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAACCAGTGAATGGGCT	5797	False	NA	NA	False	NA	NA	NA	32851726	32854043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32852135_32852585
4808	chr3	+	5871	15	FSM	ENSMUSG00000027951.17	ENSMUST00000098924.9	5909	15	38	0	38	0	multi-exon	FALSE	canonical	3	79	junction_7	20.181320925195	198	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTGTTACAAAGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	89622366	89660753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652909_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
4809	chr9	+	3400	23	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	752	10	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGCGCCCGCCCGGCGC	NA	False	NA	NA	False	NA	NA	NA	61824558	61854051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826253_61826893_61826976_61827156_61827239_61828299_61828529_61831186_61831503_61831915_61832093_61832250_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61842662_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
4810	chr15	+	2779	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	10	-8	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_12	474.923676257455	3245	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTAATGTTCTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	81756694	81799326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794780_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
4812	chr13	+	3460	5	NNC	ENSMUSG00000113566.2	novel	886	4	NA	NA	-5	2183	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_2	230.419590095981	107	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATGCAATGTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	62245556	62262044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62245653_62250218_62250513_62254561_62254689_62254881_62254943_62259162
4813	chr1	-	2096	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-8	-241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2132.04806986668	10	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGAAAGGAACTGGAAACG	NA	False	NA	NA	False	NA	NA	NA	86287130	86278526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284821_86285175_86285828_86285946_86286927
4814	chr1	-	2302	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	121	0	121	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	6	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4576	False	NA	NA	False	NA	NA	NA	55127062	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
4815	chr11	-	3544	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	256.083078726175	908	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1362	False	NA	NA	False	NA	NA	NA	20062887	20012303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20013387_20013447_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
4816	chr1	-	2345	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1992.83916018512	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287096	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278305_86278359_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
4817	chr6	-	3493	15	NIC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	0	0	intron_retention	FALSE	canonical	1	1040	junction_7	595.900900027061	1816	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	NA	False	NA	NA	NA	88875683	88860455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
4818	chr14	+	5408	8	Antisense	novelGene_ENSMUSG00000022008.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	176	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGGATTTGCTGCAAGG	NA	False	NA	NA	False	NA	NA	NA	76323678	76348221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_76328186_76332445_76332545_76335892_76336058_76336498_76336631_76339884_76339991_76343492_76343593_76344760_76344896_76348057
4819	chr11	-	4370	6	NNC	ENSMUSG00000038615.18	novel	4654	5	NA	NA	37	3	intron_retention	FALSE	canonical	3	44	junction_4	490.449834335786	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGCTTAAGTGCACTTTC	NA	False	NA	NA	False	NA	NA	NA	96720744	96708253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96718536_96718755_96719050_96720644
4820	chr19	-	4727	22	NIC	ENSMUSG00000024908.16	novel	4841	23	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	106	junction_9	104.600590087781	1	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	3625754	3504927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
4821	chr4	-	3168	9	FSM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	-67	0	-67	0	multi-exon	FALSE	canonical	3	19	junction_8	521.665826343839	1366	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141325602	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325393
4822	chr7	-	4373	17	NIC	ENSMUSG00000031078.16	novel	3286	18	NA	NA	4	-7	intron_retention	FALSE	canonical	3	725	junction_2	104.670744927845	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCATTTACTGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	144024478	143989478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
4825	chr19	-	1466	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	107	88	-2	-23	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTGAGTCCACACCCTAGC	6533	False	NA	NA	False	NA	NA	NA	4062699	4057584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
4826	chr16	-	3255	23	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	-3	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	417.388706896375	1042	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTATCTAGCATTTAT	NA	False	NA	NA	False	NA	NA	NA	91443843	91418286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422330_91422382_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
4827	chr7	+	3434	21	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	302.058620138542	3	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTATGTCTTGATCTGAT	7199	False	NA	NA	False	NA	NA	NA	109617481	109655321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629037_109641253_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223_109655048_109655213
4828	chr5	+	4533	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	375	1054	-4	-1054	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	1388	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCCATCTAGAGCCCAA	3070	False	NA	NA	False	NA	NA	NA	32616561	32651813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
4829	chr1	-	3287	7	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.74535599249993	466	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCGGGCGGCGCGGCCT	NA	False	NA	NA	False	NA	NA	NA	87167974	87141982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87142216_87147300_87147416_87148639_87148775_87152072_87152178_87153569_87153723_87153816_87153956_87165567
4830	chr4	+	3007	15	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	4060	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	229.190022310158	456	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGGTTTGGAAACTAGT	7035	False	NA	NA	False	NA	NA	NA	152034848	152065679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062762_152063061_152063787_152063900_152064044_152064374_152064505_152065159
4833	chr9	-	3321	11	NNC	ENSMUSG00000032113.17	novel	3797	12	NA	NA	1521	3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_10	133.408732847591	1	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGGTCCTGTATTCCTTT	2964	False	NA	NA	False	NA	NA	NA	36635638	36620732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36634357
4834	chr7	-	3501	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_24	283.394950951586	239	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198201	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192068_44192303_44192664_44192861_44198178
4835	chr12	+	4092	3	NNC	ENSMUSG00000079104.5	novel	1720	2	NA	NA	22	2286	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	3.5	676	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTATGTTTTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	57277219	57288954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_57277398_57281366_57281475_57285148
4836	chr1	+	3254	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	7	6	7	-6	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	74	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATGAGTAGTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	93406789	93437449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
4837	chr2	+	3108	27	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	222.97711626689	1	38	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146854938	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146868454_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
4839	chr18	+	3343	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	21	-9	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_7	610.74703233008	247	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGAATCTGTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	67908065	67928548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922498_67924933_67925085_67926219
4840	chr13	-	4387	24	NNC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	12	4001	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	118.528836433007	596	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTGCTCTTCCTCCCAT	NA	False	NA	NA	False	NA	NA	NA	99027536	98979564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986611_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027434
4841	chr11	-	4288	9	Antisense	novelGene_ENSMUSG00000081766.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2868	24	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCTTCCCCATGCTGT	7884	False	NA	NA	False	NA	NA	NA	88882435	88861077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_88861303_88861720_88861851_88863430_88865027_88871892_88872989_88873109_88873200_88873426_88873474_88875839_88875912_88878803_88878893_88881492
4842	chr17	+	4396	23	NNC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	41	-6	intron_retention	FALSE	canonical	0	0	junction_19	98.8013283278056	2	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTCATGTGGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	29879635	29922326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29918263_29918987_29919256_29919944_29920058_29920458_29920568_29921127
4845	chr7	+	3491	10	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-5	-248	intron_retention	TRUE	non_canonical	0	0	junction_2	312.868094321624	1	30	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868630	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868745_103874713_103875188_103876027_103876116_103877358_103877426_103877482_103877584_103879934_103879962_103880995_103881097_103881319_103881347_103881573_103882780_103882825
4846	chr9	-	4263	24	Antisense	novelGene_ENSMUSG00000032267.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	407	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGGCACCGCCCACACGT	NA	False	NA	NA	False	NA	NA	NA	48953857	48896684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_48896836_48911648_48911727_48912805_48912939_48914288_48914395_48915120_48915278_48919723_48919814_48920391_48920532_48921540_48921617_48922562_48922641_48926399_48926549_48927979_48928107_48929668_48929766_48935203_48935384_48937065_48937287_48938116_48938187_48939369_48939599_48942023_48942220_48943511_48943652_48946890_48947070_48947179_48947259_48948474_48948561_48949071_48949194_48950282_48950476_48952671
4848	chrX	-	3737	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	830	-1	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_15	174.927106119716	3	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATACTCTGGTGTTCGTG	NA	False	NA	NA	False	NA	NA	NA	59223619	59101319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
4850	chr17	-	3407	15	NIC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-1	1	intron_retention	FALSE	canonical	3	465	junction_12	59.5380601988753	3	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAGTTTTTGCTAGTCAA	NA	False	NA	NA	False	NA	NA	NA	79244471	79227272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
4851	chr10	-	6004	25	FSM	ENSMUSG00000034667.9	ENSMUST00000218004.2	6005	25	1	0	1	0	multi-exon	FALSE	canonical	3	537	junction_24	166.742560845221	680	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTGGAGTGGGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	121462236	121423284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
4853	chr11	-	4194	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	13	0	-2	0	multi-exon	FALSE	canonical	3	259	junction_6	30.1330383466387	458	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	61470498	61408074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
4854	chr4	+	4328	13	FSM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	4	-5	4	5	multi-exon	FALSE	canonical	2	97	junction_11	33.5186515241887	284	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTATTTTTTGCTT	-14	True	NA	NA	False	NA	NA	NA	3574878	3616624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
4859	chr5	+	2289	8	ISM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	394	4	-35	0	intron_retention	FALSE	canonical	3	3017	junction_4	129.543625935081	244	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	721	False	NA	NA	False	NA	NA	NA	77099588	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093
4860	chr2	+	3371	12	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	3012	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	894.70740403943	25	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTGTCTGACTCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	162904280	162926605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085_162925152_162925196
4861	chr17	-	3707	5	FSM	ENSMUSG00000069743.6	ENSMUST00000084141.6	3686	5	-10	-11	3	11	multi-exon	TRUE	canonical	3	21	junction_3	11.3880419739304	131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGTGCTCAATTTCC	NA	False	NA	NA	False	NA	NA	NA	22064750	22035854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059604_22059696_22064624
4862	chr12	+	2996	26	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	371.258672087266	31	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	8034	False	NA	NA	False	NA	NA	NA	76302194	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76350407_76350520_76350615_76350745_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
4865	chr10	-	2793	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	137	9	29	-4	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	450	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCCGAGCCCTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	127147518	127132098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
4866	chr8	-	3413	6	NNC	ENSMUSG00000054408.10	novel	3466	5	NA	NA	-14	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	396.150981318992	76	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCATTTTAAAGACTTCC	NA	False	NA	NA	False	NA	NA	NA	54983047	54973483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_54974353_54974403_54976431_54977975_54978092_54979485_54979561_54981374_54981451_54982797
4869	chr16	+	2789	20	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-19	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	718.590201795393	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470434	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471483_20473559_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
4870	chr2	+	3963	21	NNC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	365.78945788527	1	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAGACTCCTTTGATT	7223	False	NA	NA	False	NA	NA	NA	29779826	29821756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802579_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813809_29815951_29816115_29816715_29816842_29820481
4871	chr16	+	2796	20	NNC	ENSMUSG00000006998.17	novel	3001	21	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	696.677139004202	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAAGGTCTCTGTCTATT	NA	False	NA	NA	False	NA	NA	NA	20470453	20482158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470552_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
4872	chr17	+	4201	3	NNC	ENSMUSG00000039218.18	novel	647	3	NA	NA	-2222	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	28	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGCCCCAAGAAGCCAC	730	False	NA	NA	False	NA	NA	NA	24036059	24041638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24040123_24040508_24040540_24041531
4873	chr10	-	3578	7	NIC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-11	-5	intron_retention	FALSE	canonical	1	1248	junction_6	1086.21145884829	31	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATGTCTATGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	90959895	90952658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90957906_90959419_90959569_90959777
4874	chr11	-	3271	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_4	509.466186861852	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	352	False	NA	NA	False	NA	NA	NA	106615292	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
4875	chr2	-	3435	18	ISM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	45	4231	-5	-65	5prime_fragment	FALSE	canonical	3	761	junction_17	279.160307903274	4	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACGCCTCATGACAGTGC	NA	False	NA	NA	False	NA	NA	NA	103627949	103597516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
4876	chr1	-	3489	6	NNC	ENSMUSG00000026374.15	novel	7063	6	NA	NA	19	1133	at_least_one_novel_splicesite	FALSE	canonical	2	335	junction_5	277.34988732646	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTGTGCTGCTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	118238947	118226246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238366
4878	chr6	+	4345	30	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	2	0	intron_retention	FALSE	canonical	3	196	junction_26	50.0417661468529	489	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	NA	False	NA	NA	NA	116185018	116239626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
4879	chr6	-	2447	4	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	704	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4278.04584152884	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	NA	False	NA	NA	False	NA	NA	NA	122709431	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705555_122705730_122707100_122708351_122708556_122709329
4880	chr17	-	3011	17	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-11	95	intron_retention	FALSE	non_canonical	0	0	junction_15	160.439228662288	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTACTGTCATTTATAA	NA	False	NA	NA	False	NA	NA	NA	79244481	79227178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79242540_79242840_79243497_79244303
4881	chr3	-	3004	18	NNC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	-17	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	313.139687149074	4	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104725575	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711652_104725269
4882	chr4	+	3899	33	FSM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	-127	12	-12	-12	multi-exon	FALSE	canonical	1	36	junction_3	173.040085222326	91	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAACGTGTATTTAAAG	9928	False	NA	NA	False	NA	NA	NA	108857839	108918346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108858362_108870706_108871038_108873848_108873983_108874823_108874894_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
4883	chr18	-	2840	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	304	-225	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	2107.11229752356	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	503	False	NA	NA	False	NA	NA	NA	35087106	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084404_35085448_35085537_35085729_35085789_35086847
4884	chr6	+	3137	7	NNC	ENSMUSG00000029767.17	novel	3229	7	NA	NA	30	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	340.010784142699	30	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAAGGGCTTATGTGTCT	-4	True	NA	NA	False	NA	NA	NA	29348147	29376665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29348217_29356518_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
4886	chrX	+	3217	9	Antisense	novelGene_ENSMUSG00000036782.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	65	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAAGTCCTCTTCTCTTCT	NA	False	NA	NA	False	NA	NA	NA	23085523	23185135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_23086496_23086581_23087091_23094811_23094927_23101464_23102259_23113597_23113795_23114348_23114486_23127675_23127813_23181368_23181439_23184849
4887	chr15	+	2661	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	2	83	junction_6	459.921506767778	11	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788130_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
4888	chr4	+	3431	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	2567	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	145.78151460319	2	116	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGATTCTACAAGGTTGC	NA	False	NA	NA	False	NA	NA	NA	147576876	147600510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577038_147591995_147592102_147595209_147595337_147596801_147597210_147597881
4890	chr1	-	7141	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	-299	-325	combination_of_known_junctions	FALSE	canonical	3	22	junction_24	45.4335404434017	18	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCTTGGTAGAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	74545741	74474994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74545308
4891	chr8	+	6110	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	744	3	-149	-3	multi-exon	FALSE	canonical	3	162	junction_1	24.5	415	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTATGTGCCATATATA	NA	False	NA	NA	False	NA	NA	NA	14938854	14951717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_14939119_14944571_14945231_14946530
4892	chr19	+	2493	16	Antisense	novelGene_ENSMUSG00000024853.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCCTACTGGAGCAGCT	NA	False	NA	NA	False	NA	NA	NA	5323979	5338420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5324558_5324821_5325004_5325089_5325192_5329296_5329401_5329499_5329641_5329869_5329978_5333670_5333781_5333887_5333975_5334601_5334755_5336218_5336445_5336604_5336685_5336837_5336977_5337096_5337314_5337570_5337657_5337940_5338031_5338330
4893	chr14	+	3728	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	-4	-1	-4	1	multi-exon	FALSE	canonical	3	463	junction_11	40.4855688541514	881	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGCCTCCTTTCCTAC	NA	False	NA	NA	False	NA	NA	NA	32043971	32070109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
4894	chr6	-	2494	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	131	5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1531.09006703996	513	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8616	False	NA	NA	False	NA	NA	NA	145021779	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144948662_144948727_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
4895	SIRV7	-	2498	5	FSM	SIRV7A	SIRV703	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	4433	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147918	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
4896	chr5	+	6816	63	NIC	ENSMUSG00000029414.12	novel	6961	64	NA	NA	0	-32	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	86.4327991685586	6	62	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAATCAATAAACTATGT	NA	False	NA	NA	False	NA	NA	NA	123887778	123959622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_123887888_123891885_123892061_123895861_123895978_123896505_123896585_123897083_123897162_123898395_123898431_123898665_123898780_123900575_123900670_123901857_123901911_123902177_123902294_123903059_123903115_123903974_123904074_123905832_123905877_123905981_123906048_123906354_123906431_123907675_123907802_123907915_123908006_123909150_123909205_123910148_123910211_123911999_123912112_123913765_123913910_123914455_123914513_123914601_123914704_123916094_123916212_123916307_123916452_123917690_123917790_123919012_123919117_123919208_123919309_123919716_123919852_123920904_123921025_123922243_123922317_123923472_123923541_123924097_123924379_123924951_123925125_123925569_123925668_123927080_123927220_123928177_123928235_123928955_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
4898	chr6	+	2937	9	Genic_Genomic	ENSMUSG00000108591.2	novel	1560	1	NA	NA	-6255	-1054	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCGGCGGGCGAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	72409778	72416539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_72409953_72410405_72412096_72412186_72412371_72412792_72413011_72413177_72413323_72413398_72413512_72413976_72414101_72414353_72414432_72416328
4899	chr18	-	2486	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1369.48242867478	7	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACCAAAACACTTTG	NA	False	NA	NA	False	NA	NA	NA	64649604	64632732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633596_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
4900	chr6	-	3618	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	0	-14	intron_retention	FALSE	non_canonical	0	0	junction_7	343.3643346746	5	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAATCCTCCTAGGATGT	-1	True	NA	NA	False	NA	NA	NA	30509748	30481034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494826_30497178_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506788_30506917_30508452_30508512_30508664_30508802_30509683
4901	chr18	+	3264	18	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-25	-3	intron_retention	FALSE	canonical	3	938	junction_13	101.041188627747	3	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	6224	False	NA	NA	False	NA	NA	NA	34758034	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34765117_34765353
4902	chr8	+	2637	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	0	744	0	2	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	672	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGCTGTGTGAATACAAG	NA	False	NA	NA	False	NA	NA	NA	75836196	75854323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
4903	chr2	+	4417	33	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	26242	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	427.769422365528	1	134	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAGAGCCTGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	30202682	30234266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220749_30220858_30221024_30222410_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226945_30227090_30227235_30227420_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233295_30233361_30233472_30233603_30233713
4904	chr15	-	2669	9	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-55	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	858.820330089478	7	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTTCAAACTGGATCT	NA	False	NA	NA	False	NA	NA	NA	81283850	81247885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81261981_81273876_81273925_81276465_81276524_81283685
4905	chr14	+	4183	42	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-15	-97	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	226.237612844978	1	42	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCCTTTCTACTTTGTC	NA	False	NA	NA	False	NA	NA	NA	47886835	47973639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887855_47888029_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971724_47973556
4906	chr14	+	4305	26	NNC	ENSMUSG00000057132.17	novel	1733	4	NA	NA	2007	33677	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	120	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCCCGCACTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	52397914	52434680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52399281_52400145_52400222_52400640_52400740_52401906_52402006_52408283_52408456_52408884_52408957_52409492_52409610_52409906_52410031_52410927_52411049_52411234_52411363_52411455_52411560_52412729_52412829_52413818_52413971_52414066_52414183_52414405_52414502_52414611_52414664_52415495_52415613_52415739_52415815_52416930_52417020_52417555_52417731_52418473_52418626_52418993_52419143_52419614_52419767_52420468_52420640_52421384_52421478_52434541
4907	chr4	+	3227	5	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	15	5182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	49.0662817013884	22	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATTTTTGAAGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	145136850	145181508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145176036_145177478_145180016
4908	chr15	-	2932	12	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-146	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	970.565286421584	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283941	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248347_81248404_81249780_81250547_81250691_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
4909	chrX	-	4630	21	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGCTCCGGAAAGCTAC	NA	False	NA	NA	False	NA	NA	NA	143152672	143118955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_143119458_143120085_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256_143134372_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147102_143150892_143150933_143152553
4910	chr1	-	1976	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	1	-2	intron_retention	FALSE	non_canonical	0	0	junction_11	2213.2850981335	8	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGACTTAATACTT	NA	False	NA	NA	False	NA	NA	NA	86287085	86278219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86284894_86287054
4912	chrX	-	3507	12	Intergenic	novelGene_3984	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	163	17	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTCCGCTTCCTGCTAAC	NA	False	NA	NA	False	NA	NA	NA	95212159	95139704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_95139849_95185469_95185555_95194224_95194320_95196127_95196222_95199085_95199215_95201450_95201549_95203692_95203857_95206971_95207101_95207352_95207514_95208974_95209072_95209528_95209754_95210073
4913	chrX	+	4331	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	83	3	5	-3	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	365	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATTTCTTGATGTCTATA	NA	False	NA	NA	False	NA	NA	NA	20230802	20267089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
4915	chrX	+	3455	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	39	433	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	924.123974367076	1	113	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTCTCACCGCTGCTT	NA	False	NA	NA	False	NA	NA	NA	20529175	20548877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538578_20538667_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545673_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
4916	chr6	+	2683	17	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	319.849354188812	1099	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5458	False	NA	NA	False	NA	NA	NA	125108892	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120515_125120623_125120963
4917	chr10	+	2827	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	32	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	618.176192970544	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41395441	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667_41406629_41406685
4919	chr9	-	2781	10	NNC	ENSMUSG00000032400.19	novel	1831	18	NA	NA	-543	-5	intron_retention	FALSE	canonical	3	42	junction_4	340.117300027179	2	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTGTTGCCTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	64063575	64044430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054649_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445
4920	chr13	+	6009	6	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	196	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGTTCCTCCGCAGCACG	NA	False	NA	NA	False	NA	NA	NA	100915266	100922985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916296_100916530_100916639_100917278_100917423_100917663_100922129_100922236_100922409_100922894
4921	chrX	+	3337	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	60	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	242.873011235866	1	73	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799483	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810882_150812294_150812395_150816694_150816881_150816975_150816985_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
4922	chr2	-	4224	20	NIC	ENSMUSG00000039671.19	novel	5093	23	NA	NA	10	-3	combination_of_known_splicesites	FALSE	canonical	3	102	junction_8	165.186623243575	21	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGATGGCGTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	165740926	165626077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
4923	chr8	-	3679	17	ISM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	386	-147	-4	6	3prime_fragment	FALSE	canonical	3	416	junction_13	61.9333058620319	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73228684	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455
4924	chr2	-	3553	19	NIC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-15	-6	intron_retention	FALSE	canonical	3	560	junction_18	74.5232791535804	882	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAGAGGCTGTGAAACG	NA	False	NA	NA	False	NA	NA	NA	5017541	4995540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012244_5013290_5013624_5015499_5015587_5017515
4926	chr14	+	4464	23	FSM	ENSMUSG00000039367.12	ENSMUST00000048657.10	4461	23	-5	2	-5	0	multi-exon	FALSE	canonical	3	291	junction_9	29.806850674089	350	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTCATTACTCGCG	NA	False	NA	NA	False	NA	NA	NA	20724370	20744918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
4927	chr6	+	5831	33	NNC	ENSMUSG00000049553.12	novel	9216	34	NA	NA	491	-3115	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_27	71.00308091907	2	111	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGACTTAAGTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	71889866	71956344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676_71931830_71938507_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949746_71951105_71951196_71951727_71952004_71953002_71953204_71954317_71954436_71954927_71955093_71955398
4928	chr4	+	2082	6	Intergenic	novelGene_2037	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	20.0439517061881	361	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	2288	False	NA	NA	False	NA	NA	NA	146289346	146319726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289519_146291416_146291510_146312866_146312972_146316363_146316491_146317966_146319330_146319504
4929	chr4	+	2077	4	Intergenic	novelGene_2044	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	86	junction_2	238.174072663019	443	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	2304	False	NA	NA	False	NA	NA	NA	146289362	146319729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146312913_146312972_146317966
4930	chr2	-	2561	9	NIC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-8	-17	intron_retention	FALSE	canonical	0	0	junction_5	377.087854484867	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAGGATGGCTAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	154916375	154901246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
4932	chr17	+	2478	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-60	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1411.5918815295	10	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGTGCTGGAATTTAA	NA	False	NA	NA	False	NA	NA	NA	13135155	13143957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140987_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
4933	chrX	+	2467	13	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	286	0	combination_of_known_junctions	FALSE	canonical	3	147	junction_4	736.804983244097	3	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-4	True	NA	NA	NA	74140437	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
4934	chr1	+	2913	11	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	3	-532	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	304.482249072093	5	66	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATGAGTAGTCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	93406759	93437450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429286_93434713_93434805_93435434
4935	chr5	+	3707	20	NNC	ENSMUSG00000036817.15	novel	774	7	NA	NA	-1859	-7	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	270.652694216087	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGCATGTGCGATTTC	NA	False	NA	NA	False	NA	NA	NA	139195836	139235543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139195894_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
4937	chr12	+	3308	1	FSM	ENSMUSG00000021908.11	ENSMUST00000022467.11	1878	1	-15	-1415	-15	1415	mono-exon	FALSE	NA	NA	NA	NA	NA	36	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119224697	119228005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_119224700_119228000
4938	chr15	-	3264	13	NIC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	2	19	junction_12	706.153208706628	45	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81284267	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685_81283889_81283989
4939	chr14	+	4373	40	NNC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	36	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	230.122952586296	1	66	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAACATGACTCACTCTGA	NA	False	NA	NA	False	NA	NA	NA	47886808	47974011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887417_47887521_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47941617_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
4940	chr6	+	4238	6	NNC	ENSMUSG00000043131.15	novel	4412	6	NA	NA	15	-86	intron_retention	FALSE	non_canonical	0	0	junction_3	124.852873415072	12	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAATGCCTTTGAAGTG	NA	False	NA	NA	False	NA	NA	NA	83303032	83320671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83303250_83306848_83307016_83309435_83309510_83311089_83311192_83315262_83315427_83317157
4941	chr7	+	3266	19	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	174	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.746704094025	2	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	7413	False	NA	NA	False	NA	NA	NA	109617695	109655816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109641253_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223_109655014_109655407
4942	chr3	-	4004	24	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	166.371995335026	1	36	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACAAGTATCTTTTAT	1838	False	NA	NA	False	NA	NA	NA	27207999	27151382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27185937_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
4943	chr12	-	5293	21	FSM	ENSMUSG00000020593.17	ENSMUST00000067124.6	5581	21	-3	291	0	-6	multi-exon	FALSE	canonical	3	67	junction_16	22.2780160696593	217	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATCAGGCATATGAAC	7239	False	NA	NA	False	NA	NA	NA	16639774	16585960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
4944	chr2	+	4131	19	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	90.2496537389479	228	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAATCATTTGAAA	3603	False	NA	NA	False	NA	NA	NA	126549289	126601207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126549408_126559914_126560108_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
4945	chrX	+	3883	12	NNC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	3	-6	intron_retention	FALSE	canonical	0	0	junction_11	113.036014154197	12	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAACTCGACTACCTTCT	NA	False	NA	NA	False	NA	NA	NA	47345797	47371324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47364066_47366098_47366497_47367243_47367438_47367544_47367651_47370985
4946	chr8	+	3822	18	FSM	ENSMUSG00000041949.7	ENSMUST00000048359.5	4409	18	15	572	15	-572	multi-exon	FALSE	canonical	3	69	junction_2	14.9330686662985	299	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCACCGAGCTGGTTGAC	1128	False	NA	NA	False	NA	NA	NA	107409714	107577499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107409888_107415283_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925_107473984_107508325_107508467_107533672_107533825_107545087_107545202_107576810
4947	chrX	-	3565	26	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	-7	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_21	157.20556733144	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAATTGATACTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	59223621	59101325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
4948	chr5	-	5321	17	NNC	ENSMUSG00000029207.17	novel	6526	17	NA	NA	23586	751	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	32.8998836434113	131	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAATATTTTTATTTTA	NA	False	NA	NA	False	NA	NA	NA	66752397	66457252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66549615_66549679_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66752306
4949	chr2	+	1195	10	NIC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	75	-8523	intron_retention	FALSE	canonical	2	12	junction_4	332.11904752422	1	47	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTGGTACACAAAACTGGG	NA	False	NA	NA	False	NA	NA	NA	146854990	146871684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414
4950	chr19	-	3408	19	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	282.565522828526	260	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGCACAGTTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	40576825	40538703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566055_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
4952	chr2	-	5586	17	NNC	ENSMUSG00000054181.12	novel	1541	2	NA	NA	-132207	-2184	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	203	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCGCCGACGCCCCTCCC	NA	False	NA	NA	False	NA	NA	NA	57260727	57128422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_57128577_57157981_57158095_57179856_57180027_57194370_57194495_57195816_57195918_57196943_57197107_57228857_57229022_57230073_57230215_57235237_57235434_57245468_57245605_57245769_57245946_57246528_57246661_57247664_57247824_57254040_57254160_57254265_57254339_57254514_57254614_57257361
4954	chr12	+	3454	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	39	-8	1	8	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	1196	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTCATTTAGTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	59113708	59120792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
4955	chr19	-	1987	11	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	5263	0	intron_retention	TRUE	non_canonical	0	0	junction_10	1005.88575892096	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	9026	False	NA	NA	False	NA	NA	NA	7012072	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006603_7009848_7010018_7011530_7011782_7011965
4956	chrX	+	5323	7	NNC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1441	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.1326193117358	21	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGGTCTATGTGAAAG	9797	False	NA	NA	False	NA	NA	NA	134696895	134704193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134697086_134697659_134697787_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
4957	chr13	-	2762	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	493.918758295247	1	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498358	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487259_74487715_74487835_74491455_74491618_74492969_74493057_74498264
4958	chr2	-	5368	16	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	10	0	intron_retention	FALSE	non_canonical	0	0	junction_4	260.954010422441	2	146	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017554	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4998668_4999380_4999479_5001905_5002144_5003344_5003454_5003544_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5011390_5011877_5012244_5013290_5013624_5015499_5015587_5017515
4959	chr7	+	3479	9	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	103.944396193349	868	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTAGCTGGACTATAGCG	NA	False	NA	NA	False	NA	NA	NA	12568694	12584501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12568748_12568849_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
4961	chr14	+	4505	24	NNC	ENSMUSG00000039367.12	novel	724	8	NA	NA	122	-3	intron_retention	FALSE	non_canonical	0	0	junction_4	98.4953339648861	4	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATCCCTCTCATTACTC	NA	False	NA	NA	False	NA	NA	NA	20724618	20744915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724806_20726025_20726226_20729595_20729732_20732746_20732799_20732855_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
4962	chr14	+	3164	1	NIC	ENSMUSG00000012405.17	novel	1922	4	NA	NA	-16	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	109	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	False	NA	NA	False	NA	NA	NA	4198709	4201873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_4198700_4201900
4964	chr11	-	2413	12	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	9	2	intron_retention	FALSE	canonical	3	3830	junction_7	164.674233885527	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9669	False	NA	NA	False	NA	NA	NA	106679305	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
4966	chr2	+	4688	33	NNC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	0	9	intron_retention	FALSE	canonical	0	0	junction_8	79.3284743073854	1	93	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCATGCAACTTCCTCCTA	NA	False	NA	NA	False	NA	NA	NA	180961545	180997819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976706_180976771_180977685_180977840_180980027_180980148_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180997346_180997443_180997606_180997716
4967	chr13	-	2748	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2499.69908484859	6	53	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	4782	False	NA	NA	False	NA	NA	NA	58550299	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541577_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
4968	chr8	+	4880	23	NIC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	-4	678	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	146.987321654872	252	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTAGGACATTTTAAGCA	NA	False	NA	NA	False	NA	NA	NA	108163011	108285905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
4969	chr12	+	3222	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	19	0	19	0	multi-exon	FALSE	canonical	3	837	junction_20	135.484134190258	1	65	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7930	False	NA	NA	False	NA	NA	NA	76302090	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
4970	chr4	-	3403	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	28	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	363.861975466086	26	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2520	False	NA	NA	False	NA	NA	NA	129229135	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203675_129211452_129211552_129211654_129211713_129212236_129213347_129213567_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
4971	chrX	-	3666	12	Intergenic	novelGene_3983	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	53	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCCGTTGCGCTGCTCGC	NA	False	NA	NA	False	NA	NA	NA	95212160	95139647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_95139849_95185469_95185551_95194221_95194320_95196127_95196403_95197898_95197983_95199067_95199215_95201450_95201549_95203692_95203857_95206971_95207101_95207352_95207430_95209528_95209754_95210073
4972	chr15	+	2646	17	NIC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	488.35229583135	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81756750_81773498_81773636_81779370_81779630_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
4974	chr10	-	4510	9	NIC	ENSMUSG00000020097.15	novel	4102	15	NA	NA	-9	1030	intron_retention	FALSE	canonical	3	186	junction_8	95.3713138212953	2	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTACCAAACAGATCATCAA	NA	False	NA	NA	False	NA	NA	NA	60983392	60938943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_60941300_60942043_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983301
4975	chr11	-	2021	6	Antisense	novelGene_ENSMUSG00000018583.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTCCGGTTCTGGTTCC	7614	False	NA	NA	False	NA	NA	NA	55391709	55386134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_55386277_55386968_55387070_55388474_55388589_55388738_55388868_55389383_55389492_55390282
4976	chr8	-	3671	8	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	818.335194034766	73	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTAATTGTTTGGGATA	NA	False	NA	NA	False	NA	NA	NA	94763642	94742124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743929_94745249_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
4978	chrX	+	4236	15	NNC	ENSMUSG00000031256.12	novel	4502	14	NA	NA	15	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	185.585243629609	1	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCGTGGATTCAATAAATAT	NA	False	NA	NA	False	NA	NA	NA	132960097	132987540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980_132985041_132985126
4979	chr9	+	3631	7	Intergenic	novelGene_1070	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	23	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCCAGAAAACTGAGCGAG	NA	False	NA	NA	False	NA	NA	NA	58125710	58157016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127857_58136640_58136691_58137268_58137369_58140434_58140531_58141635_58142217_58154257_58154725_58156825
4980	chr3	-	1237	5	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	107	-5	intron_retention	FALSE	canonical	3	3673	junction_1	2734.43754499897	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049902	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
4981	chr11	+	3859	2	FSM	ENSMUSG00000020328.11	ENSMUST00000144601.2	445	2	-2634	-780	5	-2	multi-exon	FALSE	canonical	3	1147	junction_1	0	98	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTACTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	40624498	40630871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_40627472_40629985
4983	chr4	-	637	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	41	200	-17	-56	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCACTAAGAAGAACAAGGAG	NA	False	NA	NA	False	NA	NA	NA	86775608	86773096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
4985	chr12	+	2764	7	NIC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	-17	1	intron_retention	FALSE	canonical	3	1278	junction_1	250.508150233347	250	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAACTGCTTTTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	80992260	80997272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
4986	chr2	-	3373	20	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	3	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	178.840773205287	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAATGTACAACTTGAGA	NA	False	NA	NA	False	NA	NA	NA	5017561	4995552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003583_5004483_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
4987	chr6	-	4736	1	NIC	ENSMUSG00000079477.10	novel	2159	6	NA	NA	15940	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	95	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGCTGTCTGTCTTTTT	812	False	NA	NA	False	NA	NA	NA	87980825	87976089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_87976100_87980800
4988	chr2	+	3204	8	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1993	junction_1	209.413758977245	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTATTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	130116365	130121230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130119891_130120075
4989	chr18	+	6396	21	FSM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	-2	-93	-2	-3	multi-exon	TRUE	canonical	3	82	junction_6	14.1470845052965	223	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTATAACAATCACTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	42408434	42474589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_42408658_42421172_42421292_42425047_42425173_42431497_42431590_42432207_42432402_42433314_42433576_42434787_42435082_42438744_42438880_42447035_42447201_42450665_42450816_42452866_42453012_42453828_42453983_42454976_42455274_42457119_42457264_42458969_42459090_42460228_42460304_42460418_42460584_42465844_42465950_42466273_42466463_42470027_42470139_42471456
4990	chr9	-	5370	9	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	46	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	481.351336733368	2	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGAATTGTGCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	96993164	96957021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96981138_96981233_96982127_96982293_96992963
4991	chr15	+	5826	22	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-2	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	77.9810140274723	2	94	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775627	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57803538_57803705_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
4992	chrX	-	3836	17	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTGGCGGGCTGGCG	NA	False	NA	NA	False	NA	NA	NA	84248058	84091911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_84092065_84097575_84097633_84133416_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183105_84185335_84185443_84187633_84187772_84188516_84188556_84192735_84192799_84193815_84193885_84196632_84196792_84221407_84221552_84222302_84222428_84234211_84234317_84246079
4993	chr19	-	3665	19	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	31	-2	intron_retention	TRUE	canonical	0	0	junction_13	536.62876562738	1	102	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTGGCTAACTACTTG	3949	False	NA	NA	False	NA	NA	NA	5345400	5323961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337653_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
4994	chr4	+	3293	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-33	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	127.762366220348	1	107	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576840	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147597216_147597299_147598217_147599053
4995	chr13	+	4084	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	0	745	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	631	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCACTGTGTTGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	97619208	97634260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
4996	chr8	+	3363	17	NNC	ENSMUSG00000000303.13	novel	3203	17	NA	NA	-11	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	254.482563253359	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAAACTGTTGTGAGGCT	5066	False	NA	NA	False	NA	NA	NA	107329999	107396867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395765_107396803
4997	chr3	+	3218	2	NNC	ENSMUSG00000025764.15	novel	5584	11	NA	NA	10821	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTGTCTGTTGAAAT	2683	False	NA	NA	False	NA	NA	NA	41567685	41571293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_41570540_41570929
4998	chr8	+	3161	20	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-11	-2095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	911.876091111159	1	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111760499	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777098_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
4999	chr6	+	3433	8	Genic_Genomic	ENSMUSG00000108591.2	novel	1560	1	NA	NA	-6248	-1004	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGGCTCGGGCTCCGCCC	NA	False	NA	NA	False	NA	NA	NA	72409785	72416589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_72412096_72412186_72412371_72412792_72413011_72413177_72413323_72413398_72413512_72413976_72414101_72414353_72414432_72416328
5000	chr16	+	4212	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16975	3363	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	424.555061211146	3075	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTTGTGAACCTCCTC	670	False	NA	NA	False	NA	NA	NA	48432004	48454626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48432222_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
5002	chr5	+	1900	14	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1823	7194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	86	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGCCAACCGAAATTGG	675	False	NA	NA	False	NA	NA	NA	138162861	138170102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165027_138165305_138165367_138166148_138166235_138166319_138166434_138166593_138166745_138167071_138167210_138167359_138167541_138167610_138167734_138167819_138167985_138168576_138168659_138169987
5005	chr11	-	2322	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1169.3288287399	3	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677157_106677247_106677371_106677734_106677901_106679098
5006	chr13	-	1351	10	ISM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	45	9153	0	-4112	5prime_fragment	FALSE	canonical	3	1480	junction_2	194.107326809133	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGCCTCAGTGCATGGT	NA	False	NA	NA	False	NA	NA	NA	74498354	74479525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
5007	chr15	-	4436	37	NNC	ENSMUSG00000034022.9	novel	4410	37	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	133.490425397627	2	96	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACGAGTGTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	76491737	76480010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480108_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485389_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
5008	chr6	-	2621	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-134	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1180.44491542262	11	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTGGATTTGAATCTT	8351	False	NA	NA	False	NA	NA	NA	145022044	144944881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144964987_144965057_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
5009	chr4	+	680	3	ISM	ENSMUSG00000028601.19	ENSMUST00000116307.8	893	9	-22	8762	8	-3545	5prime_fragment	FALSE	canonical	3	745	junction_1	25.5	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCAGAGAAACATGTACC	NA	False	NA	NA	False	NA	NA	NA	108022692	108027503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_108022859_108026911_108026980_108027057
5010	chr16	+	2737	20	ISM	ENSMUSG00000006998.17	ENSMUST00000172207.8	3001	21	564	0	552	0	3prime_fragment	FALSE	canonical	3	2673	junction_7	192.465948349931	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20471017	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
5011	chr2	-	2353	11	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-37	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5115.12942260506	17	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3699	False	NA	NA	False	NA	NA	NA	154734788	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730178_154730224_154730281_154734609
5013	chr9	+	3791	15	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	intron_retention	FALSE	canonical	3	473	junction_5	45.2744465477391	4	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385269	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392233_108392305_108392432_108392994
5014	chrX	-	3689	11	NNC	ENSMUSG00000031232.18	novel	4531	10	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_1	70.7856623900632	65	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105055504	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012837_105013670_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
5015	chr8	-	4403	8	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	818.335194034766	153	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGAATGACTAATTGTTT	NA	False	NA	NA	False	NA	NA	NA	94763642	94742130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743930_94744512_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
5016	chrX	+	3575	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	84	-724	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	217.844118390549	2	81	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799507	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819342_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
5017	chr14	+	4072	39	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	550	50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	212.356674820266	1	50	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGATGAAGTAAATGTAA	NA	False	NA	NA	False	NA	NA	NA	47887400	47973800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47887521_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
5018	chr2	-	2657	9	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-9	-416	intron_retention	FALSE	canonical	0	0	junction_5	387.939992137959	10	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGCTCTATTAAAATGT	NA	False	NA	NA	False	NA	NA	NA	154916376	154901645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906847_154907337_154907607_154909242_154909319_154910747_154910939_154916284
5019	chr15	-	2110	7	NNC	ENSMUSG00000063765.13	novel	2548	6	NA	NA	5716	3197	intron_retention	FALSE	non_canonical	0	0	junction_1	0	44	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGACAGCGCGGACCTTAA	NA	False	NA	NA	False	NA	NA	NA	81572513	81567168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81567257_81568041_81568190_81568497_81568584_81568913_81569148_81569579_81569647_81570409_81570522_81571138
5026	chr3	+	2189	2	ISM	ENSMUSG00000053931.12	ENSMUST00000196671.2	1053	4	3015	-842	3015	-3	3prime_fragment	FALSE	canonical	3	5381	junction_1	0	6	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATATGAACCACAGGCT	NA	False	NA	NA	False	NA	NA	NA	121247668	121251845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_121248743_121250730
5027	chr11	-	4247	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1197.84387000137	2	165	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383438_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389450_100389589_100395035_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
5028	chr4	+	3660	6	NNC	ENSMUSG00000066150.13	novel	3718	5	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	315.653861056696	17	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTCTATGCATGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	62278970	62309998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834_62306988_62307030
5029	chr16	-	3214	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-43	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.566912506689	242	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAACTGTATCATTGTAC	8067	False	NA	NA	False	NA	NA	NA	4867770	4831771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832568_4832695_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
5030	chr6	-	3229	8	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	5	intron_retention	FALSE	canonical	3	591	junction_1	84.0245348037083	75	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTATTACTTGTCCATT	NA	False	NA	NA	False	NA	NA	NA	72416539	72409776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72411379_72411963_72412098_72412188_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
5031	chr7	-	4426	24	NNC	ENSMUSG00000038644.15	novel	3302	26	NA	NA	38	0	intron_retention	FALSE	canonical	3	36	junction_14	293.376214142481	9	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGGCTGTGTGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	44198224	44182174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44184141_44184440_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189873_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
5032	chr10	+	4203	24	Antisense	novelGene_ENSMUSG00000112806.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGCGTGCGCGAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	62579743	62628119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62580601_62581040_62581250_62582681_62582870_62583126_62583240_62586321_62586472_62586714_62586799_62587523_62587636_62588954_62589191_62592259_62592453_62595871_62596055_62599214_62599302_62601044_62601213_62601720_62601833_62602333_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626820_62627992
5033	chr17	+	3197	4	NIC	ENSMUSG00000019432.16	novel	1770	11	NA	NA	7490	0	intron_retention	FALSE	canonical	3	2453	junction_1	64.9666581152722	1030	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAACAACCGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	35469132	35472652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35471833_35471939_35472085_35472182_35472331_35472448
5034	chr3	+	2601	16	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-19	-338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	332.204889923205	14	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTTCTACTTGTTATGC	4830	False	NA	NA	False	NA	NA	NA	34074227	34124133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112389_34118267_34118469_34122309_34122402_34123065
5035	chr7	-	2539	20	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-9	-468	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	809.816370553609	5	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGAGAATTTATATAGTTG	NA	False	NA	NA	False	NA	NA	NA	126165539	126146094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162502_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
5036	chr6	-	2975	21	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-10	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	195.787454909654	14	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGGCTGACTGGTTTCAG	7922	False	NA	NA	False	NA	NA	NA	124806381	124791991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797003_124797095_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
5037	chrX	+	2302	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-50	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1071.96669493101	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473290	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480926_100483159_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
5039	chr12	+	3248	2	Genic_Genomic	ENSMUSG00000021908.11	novel	1878	1	NA	NA	-15	1431	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119224697	119228021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_119226002_119226077
5040	chr13	+	3186	4	NNC	ENSMUSG00000113566.2	novel	478	4	NA	NA	-118698	2193	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	214.715832878921	2304	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTCTATATTATTT	1169	False	NA	NA	False	NA	NA	NA	62126863	62262054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62126970_62254561_62254689_62254881_62254943_62259162
5041	chr18	-	4106	5	NNC	ENSMUSG00000024580.9	novel	4038	4	NA	NA	3	-14	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	130.711514412465	620	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAGAAAAACACCTCTC	NA	False	NA	NA	False	NA	NA	NA	61859391	61845508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61849199_61851620_61851706_61851824_61851907_61852772_61852927_61859296
5043	chr17	-	3415	15	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	6	-18	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_13	272.095243303832	79	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAAAACGATAATCGAACT	NA	False	NA	NA	False	NA	NA	NA	29226963	29189871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29219797_29219886_29226684
5044	chr3	-	3626	21	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	9	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	466.223165447621	5	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTATGCAAAAGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	104725549	104702160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711723_104711802_104712030_104712219_104712424_104714277_104714419_104725251
5045	chr18	-	3744	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	739.551292652579	1	113	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGGCTCTAACTAGACT	NA	False	NA	NA	False	NA	NA	NA	42395194	42335520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367765_42368541_42368604_42369643_42369725_42369803_42369892_42374967_42375194_42375768_42375839_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384426_42390113_42390260_42395031
5046	chr9	-	4604	9	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	28	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	482.663298143747	1	124	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATTAAAATTCAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	96993182	96957661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96958108_96958154_96961293_96962245_96962536_96967109_96967181_96971550_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
5047	chr12	+	5945	25	NIC	ENSMUSG00000034574.11	novel	5879	26	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	21.2589441961103	188	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTTTTCTATGCATTA	1801	False	NA	NA	False	NA	NA	NA	71877849	72039107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_71878106_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
5050	chr1	-	2294	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-87	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2654.69501474308	33	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86286778	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280845_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286716
5051	chr8	+	4508	4	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	2	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	30.6412938514171	3	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAACCTGCTGGCTCCCTT	NA	False	NA	NA	False	NA	NA	NA	22550739	22561638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22550787_22555015_22555948_22557896_22559991_22560203
5052	chr9	+	3591	21	NIC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	965	junction_19	396.045376188133	569	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	21279166	21316659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
5053	chr6	+	3110	8	NNC	ENSMUSG00000029767.17	novel	2670	7	NA	NA	41	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	377.716987239096	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAAGGGCTTATGTGTCT	7	True	NA	NA	False	NA	NA	NA	29348158	29376665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29348208_29356469_29356609_29356664_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
5055	chr18	+	2888	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	-29	6	-26	-6	multi-exon	FALSE	canonical	3	1498	junction_1	106	242	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATATCTAAATGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730741	46743272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
5056	chr14	-	2887	8	NIC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-44	5	intron_retention	FALSE	canonical	3	4955	junction_4	388.751743876921	36	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGCTGTACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	36857273	36842775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855761_36857151
5058	chr2	-	3675	28	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	6	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	72.0726656632212	5	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCATTTGCCTGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	103591534	103551606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
5059	chr2	-	3907	19	NIC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-10	-9	intron_retention	FALSE	canonical	3	560	junction_18	74.3529288238961	10	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTGAGAGGCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	5017536	4995543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
5060	chr14	+	4350	23	NNC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	76.335492649334	5	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCTCTCATTACTCGCG	NA	False	NA	NA	False	NA	NA	NA	20724390	20744918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726171_20729634_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
5061	chr10	+	3213	8	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	717	junction_1	93.9131165992683	13	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCATAAATTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	21870581	21875790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21872254_21872457_21873337_21873796_21873953_21874058_21874149_21874558
5062	chr18	+	5545	4	NNC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-16	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.9055810925442	139	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGCAAACATTTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	24087732	24097719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24087974_24089395_24089911_24090111_24090254_24093072
5063	chr7	-	3288	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	46	12	26	-12	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	769	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAATTTTAGATTTGTATC	NA	False	NA	NA	False	NA	NA	NA	113853900	113814805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
5064	chr11	-	2259	12	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	1	11	junction_8	1215.6105699817	2272	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106677051_106677186_106677273_106677371_106677734_106677901_106679098
5065	chr15	-	4607	16	NNC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	21	-3	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_15	74.6837480461594	591	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCCTCAGTAGGATTTTT	NA	False	NA	-83	True	NA	NA	NA	96597590	96585275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495_96596699_96597317
5066	chr1	+	3763	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	21	-925	-15	2	multi-exon	FALSE	canonical	3	161	junction_1	115.931269170995	671	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGTGTGGTATGTGGT	NA	False	NA	NA	False	NA	NA	NA	171975729	172023958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
5068	chr10	+	2876	12	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	-2	-14	intron_retention	FALSE	canonical	0	0	junction_8	520.430257472182	1	42	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTTTATAACCTCTGTC	1583	False	NA	NA	False	NA	NA	NA	79690460	79700179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697886_79698282_79698376_79698486_79698704_79698811_79698890_79698978
5069	chr10	+	2580	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	28	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	272.669980686079	61	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7018	False	NA	NA	False	NA	NA	NA	60113477	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135700_60135740_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
5070	chr2	+	2061	9	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-21	79	intron_retention	FALSE	canonical	3	543	junction_4	40.4132945328638	26	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGGTCGGAAGGACCA	NA	False	NA	NA	False	NA	NA	NA	174257622	174267820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174265942_174266398_174266534_174266906_174267047_174267705
5072	chr6	-	3151	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	-56	-19	-7	0	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	1110	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCAGTTCTTTGGGG	7849	False	NA	NA	False	NA	NA	NA	124806454	124791981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
5073	chr5	-	4327	8	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	107	-28	combination_of_known_splicesites	FALSE	canonical	1	4	junction_3	91.7129505910831	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCTGTTTTCTAGTAT	NA	False	NA	NA	False	NA	NA	NA	74228974	74159414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
5074	chr11	-	3628	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9017	424	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	549.149757007414	2	88	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTCAAACTCAGAAATCTG	407	False	NA	NA	False	NA	NA	NA	106615237	106544618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573790_106575049_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615168
5075	chr15	-	3269	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	-10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.638995176448	1355	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGAGCTATAATGTCTT	NA	False	NA	NA	False	NA	NA	NA	83033595	83010177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
5076	chr11	-	3245	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9037	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	533.704691964435	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	387	False	NA	NA	False	NA	NA	NA	106615257	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606097_106615196
5077	chrX	+	3326	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	312.456235988793	3	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACTCAGTCTTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	95139647	95212160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95210846_95211363
5078	chr2	+	5420	31	NIC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	1	-3	intron_retention	FALSE	canonical	3	86	junction_30	43.6814860349579	15	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGATGGTGTCTGTATTGT	NA	False	NA	NA	False	NA	NA	NA	180961532	180998404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180997346_180997443_180997606_180997716_180997873_180997950
5080	chr11	+	4328	22	NNC	ENSMUSG00000017119.21	novel	4344	23	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	68.9987018840065	85	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCAAGCTGTTTATTG	987	False	NA	NA	False	NA	NA	NA	101443692	101472772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451282_101455437_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
5081	chr17	-	5338	40	NIC	ENSMUSG00000002496.11	novel	5432	40	NA	NA	-1	-6	combination_of_known_junctions	FALSE	canonical	2	8	junction_38	54.6963406257084	4	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACGCACATCTGGCCCGTG	NA	False	NA	NA	False	NA	NA	NA	24851568	24815500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850970_24851086_24851511
5082	chr18	+	3643	15	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	-33	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	412.041557246304	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35695318	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695346_35704895_35705989_35710615_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35715058_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
5083	chr1	-	4185	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	0	-642	at_least_one_novel_splicesite	FALSE	non_canonical	3	150	junction_1	84.2673387202895	465	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATGTCGGTCTGCCCTGC	8591	False	NA	NA	False	NA	NA	NA	88205355	88190834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88194001_88194051_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
5084	chrX	+	4675	12	NIC	ENSMUSG00000037315.16	novel	4866	13	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	48.0988994908553	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTCTGTCAGTGTGATG	NA	False	NA	NA	False	NA	NA	NA	20292026	20386175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20292070_20295261_20295371_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
5085	chr1	-	2524	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-8	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1967.76308420388	24	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287094	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278380_86278557_86278758_86279088_86279216_86279919_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
5086	chrX	+	3562	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-4	-11	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	312.456235988793	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGACTTCACTATGACT	NA	False	NA	NA	False	NA	NA	NA	95139643	95212147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95211785_95212057
5087	chr11	-	3263	3	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	1892	17	604	0	3prime_fragment	FALSE	canonical	3	1322	junction_1	36.5	1	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	469	False	NA	NA	False	NA	NA	NA	96712947	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_96711343_96712076_96712236_96712929
5088	chr12	+	3241	6	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	264.780210740909	22	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561173_86566103
5089	chr1	-	3455	8	NNC	ENSMUSG00000009907.18	novel	4633	11	NA	NA	2014	-1731	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	180.628607583492	5	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACTTTTGGCTTTTATAT	8817	False	NA	NA	False	NA	NA	NA	106715665	106698890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_106700279_106701736_106701878_106704999_106705185_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432
5090	chr15	+	2635	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	473.669471431387	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTAATGTTCTGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	81756684	81799327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797482_81797964_81798014_81798438_81798561_81798828
5091	chr15	-	2843	14	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-91	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	923.91644515786	3	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283886	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248223_81248263_81248306_81248405_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
5092	chr14	-	2544	9	NNC	ENSMUSG00000060373.16	novel	2617	9	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1194.81983474497	7	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTGTTAGAAGCTG	8744	False	NA	NA	False	NA	NA	NA	52341466	52311007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312782_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
5093	chr3	+	3047	8	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	8	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	569.131023973373	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGACTAGCTTCAGTG	NA	False	NA	NA	False	NA	NA	NA	95836602	95854694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836726_95836899_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
5094	chr1	-	2350	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2062.99910654597	2918	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTTAATACTTCCTA	NA	False	NA	NA	False	NA	NA	NA	86287096	86278215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86280959_86281460_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
5095	chr6	-	4279	23	FSM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	66	0	4	0	multi-exon	FALSE	canonical	2	285	junction_22	59.9717047606688	5	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	8351	False	NA	NA	False	NA	NA	NA	118396369	118360341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385112_118388442_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
5096	chr10	-	2608	8	ISM	ENSMUSG00000052798.14	ENSMUST00000218810.2	1233	9	-4	1642	3	-1290	5prime_fragment	FALSE	canonical	3	814	junction_1	30.3489905019886	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAATGTCTTCAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	117628607	117614797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
5097	chr10	-	2428	20	ISM	ENSMUSG00000052798.14	ENSMUST00000167943.8	3098	28	14894	-3	4207	0	3prime_fragment	FALSE	canonical	3	716	junction_19	75.8102310755881	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	NA	False	NA	NA	NA	117613709	117586525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497
5098	chr17	-	3181	13	NIC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	1	4	junction_12	219.984642772071	29	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACTGTGGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	29226937	29189858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29226684
5100	chrX	+	4825	30	Fusion	ENSMUSG00000031010.18_ENSMUSG00000087424.2	novel	523	5	NA	NA	-170	6712	multi-exon	TRUE	canonical	3	31	junction_2	238.013169231673	3	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGTGCCCAATGCTGAA	NA	False	NA	NA	False	NA	NA	NA	12908083	13006733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_12908349_12909795_12909896_12919473_12919590_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648
5102	chr4	-	5399	9	NIC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	393	junction_7	24.5305931440722	81	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAATCTGTGTCTGGGAC	NA	False	NA	NA	False	NA	NA	NA	120682895	120614637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_120615494_120616528_120616589_120618824_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
5103	chr3	+	4079	24	NIC	ENSMUSG00000034349.15	novel	4316	24	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	204.478940360712	23	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	68912332	68941956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_68912449_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
5106	chrX	+	2110	12	ISM	ENSMUSG00000041718.17	ENSMUST00000198039.5	3307	22	30634	4775	1917	-101	internal_fragment	FALSE	canonical	3	957	junction_10	113.107642725747	4	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGCCGCAGCCACAGC	NA	False	NA	NA	False	NA	NA	NA	143131647	143152666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
5107	chr14	+	2597	1	FSM	ENSMUSG00000115684.2	ENSMUST00000227446.2	663	1	-140	-1794	-140	1794	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAGAAAAATTAAAAAAAAAA	2553	False	NA	NA	False	NA	NA	NA	119515695	119518292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_119515700_119518300
5108	chr7	-	3003	20	NIC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-25	-456	intron_retention	FALSE	canonical	3	1924	junction_13	281.147569220633	3	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165555	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
5109	chr13	-	2918	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	28	406	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_14	190.036910477281	31	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATGCCTAGTAACTTAAT	NA	False	NA	NA	False	NA	NA	NA	9046058	9022109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041827_9041967_9042072_9042680_9042852_9045984
5110	chr1	-	2880	18	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	6	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	751.748278380764	25	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATAGTGTTGTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	128345090	128291444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128302583_128303240_128303498_128303555_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
5111	chr11	+	2668	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3950	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	4230	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCAATGTAGACTGCTA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55391391_55391426
5112	chr9	-	2814	14	Antisense	novelGene_ENSMUSG00000032042.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGGTTCAGCCGCACTTCC	NA	False	NA	NA	False	NA	NA	NA	35128144	35122467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124580_35124675_35124829_35125038_35125128_35125228_35125351_35125481_35125570_35125855_35126027_35126111_35126327_35126761_35126924_35127003_35127108_35127231
5113	chrX	-	3095	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	386.794742517923	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231296	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086841_23086957_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
5114	chr5	-	3097	7	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23744	13355	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCACCTGACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	108256652	108240876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108241271_108246982_108247053_108248678_108248848_108251883_108251990_108252130_108252184_108252290_108252396_108254452
5116	chr6	+	1751	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	585	105	7	88	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTAAGGTTATTTGCTT	5195	False	NA	NA	False	NA	NA	NA	85429080	85445352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
5117	chr2	-	3316	19	NIC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	181.868533782639	27	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017569	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
5118	chrX	-	3541	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	4	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	500.712104477461	3	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACAAGCATTAATTGTG	NA	False	NA	NA	False	NA	NA	NA	93256253	93232323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240903_93241050_93243319_93243465_93244504_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
5119	chr6	-	4409	6	ISM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	2967	18	-2234	-18	intron_retention	FALSE	canonical	3	2400	junction_5	122.839081728903	553	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATGCGTTTCTGAAATG	NA	False	NA	NA	False	NA	NA	NA	83291621	83282690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793
5120	chr15	+	5861	23	NIC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	28	-142	combination_of_known_junctions	FALSE	canonical	3	400	junction_1	95.5578769711826	1	93	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATGGGAAAAAAATATATA	18	False	NA	NA	False	NA	NA	NA	25774100	25813615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
5121	chr8	+	4474	35	NIC	ENSMUSG00000004565.16	novel	4496	35	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	1	8	junction_1	73.7352941176471	292	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGTGCTGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	3565406	3594264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3565557_3566506_3566569_3566680_3566750_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
5123	chrX	+	3768	24	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	43	-727	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	237.261542812025	2	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	NA	False	NA	NA	NA	150799466	150844963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809442_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
5124	chr15	-	2703	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	72	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	1581.54728067814	4	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGGTTATGCTTTTATT	449	False	NA	NA	False	NA	NA	NA	36609145	36595905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606141_36608557
5127	chrX	+	3379	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	781.888497421467	1	103	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20544929_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
5128	chr3	+	3173	8	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	8	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	569.131023973373	1781	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAATGACTAGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	95836602	95854692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491_95853420_95853465
5129	chrX	-	3768	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	69	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	212.941062723402	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAAAAATCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	149800249	149766147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767564_149768486_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797147_149800196
5132	chr3	-	3342	28	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-30	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	296.007456436688	4	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGATCTCTCACCTTAA	3477	False	NA	NA	False	NA	NA	NA	89959852	89907451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916561_89920013_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
5134	chr2	+	3536	23	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	69	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	136.951430130817	781	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428760	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428913_118430651_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
5135	chr4	-	2660	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	191.402612312372	334	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726992	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147698767_147698841_147699736_147699864_147702873_147702956_147725368_147725463_147726820
5137	chr13	+	4548	36	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	75	7368	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_34	518.882375094465	2	115	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCCAAATGTTAAAATAGAC	NA	False	NA	NA	False	NA	NA	NA	49835741	49895111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49836121_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134_49887238_49892582_49892628_49894803
5138	chr2	-	3961	35	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.168957724898177	1	46	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAAATGCTACACTTCCG	NA	False	NA	NA	False	NA	NA	NA	180997822	180961535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964687_180965154_180965236_180965474_180965536_180970393_180970471_180972583_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981033_180982286_180982387_180983315_180983366_180988618_180988698_180988803_180988886_180990965_180991101_180991255_180991368_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992960_180993043_180993158_180993365_180993491_180993593_180993743_180993831_180993971_180994354_180994469_180994549_180994641_180995768_180995967_180996143_180996233_180996798_180996917_180997100_180997345_180997441_180997604_180997688
5139	chr8	+	4000	16	Antisense	novelGene_ENSMUSG00000031696.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	52	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGAGCCTTGCGAGCCCC	NA	False	NA	NA	False	NA	NA	NA	85987889	86026146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85988920_85989001_85990183_85990775_85990952_85997320_85997455_86000160_86000254_86001445_86001631_86005350_86005482_86005588_86005686_86007864_86007972_86008467_86008551_86010618_86010836_86012969_86013153_86014324_86014449_86016334_86016431_86021486_86021587_86026083
5140	chr13	+	3244	29	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	21	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	113.222932297124	924	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18901480	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994528_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
5141	chr10	+	4240	8	NNC	ENSMUSG00000006498.17	novel	2598	13	NA	NA	-22	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	635.078719208758	10	88	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTGTCTTCCCTGAGCC	718	False	NA	NA	False	NA	NA	NA	79694583	79700190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79695242_79695285_79695357_79695435_79695547_79695614_79695790_79696657_79698376_79698486_79698704_79698811_79698890_79698978
5142	chr15	+	2624	17	NNC	ENSMUSG00000022477.14	novel	703	4	NA	NA	-3230	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	488.8619437019	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	1	True	NA	NA	False	NA	NA	NA	81776276	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81776360_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
5144	chr13	+	4419	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	12	3	12	-3	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	355	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAACTTGTGGCTGTGAAC	NA	False	NA	NA	False	NA	NA	NA	51254927	51306579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
5145	chr8	-	4177	23	NIC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	-15	5	combination_of_known_junctions	FALSE	canonical	3	33	junction_22	108.399513584954	451	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCATGTGTCGTGCCCC	8420	False	NA	NA	False	NA	NA	NA	120285195	120234889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285128
5146	chr11	-	3974	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	57	0	intron_retention	FALSE	canonical	3	150	junction_3	570.471345078397	1011	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714896	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96714383
5148	chr5	-	2382	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-61	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	570.373208468609	35	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGTAGAGTTTT	2259	False	NA	NA	False	NA	NA	NA	138170141	138162851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165666_138165806_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
5149	chr4	+	2485	6	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	2	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	43.2730863239497	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147637735	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661481_147661587_147665698_147665826_147667290_147668023_147668359
5150	chr11	-	2233	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641590_48642438_48644038_48644121
5151	chr14	-	2426	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1764.91145316132	18	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTATTGCTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	36857252	36842778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847238_36847882_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
5152	chr6	-	2972	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	3	-29	intron_retention	FALSE	canonical	0	0	junction_1	279.574416151884	126	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGCTGCCTCGTCATCT	9175	False	NA	NA	False	NA	NA	NA	88495807	88480589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88481396_88481486_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
5153	chr14	+	3980	10	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-1	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	172.544429776546	23	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGATTGCAATTCTAGT	NA	False	NA	NA	False	NA	NA	NA	52517072	52533848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657_52531664_52532708
5154	chr1	-	2166	13	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	36	6115	0	267	5prime_fragment	FALSE	canonical	3	5685	junction_12	952.613014584388	64	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCCGGGGAGGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	86287086	86278555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
5155	chr11	+	4615	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	5	-6	5	2	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	920	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCCTCTGCCATTTCTGG	22	False	NA	NA	False	NA	NA	NA	98798631	98814768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
5156	chr17	+	2960	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	21	junction_1	453.942061892876	6	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4872	False	NA	NA	False	NA	NA	NA	87979968	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980123_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
5157	chr8	+	3196	14	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	266.164383962131	1	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107390911_107395834
5158	chr3	+	4363	6	FSM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	-22	-3510	-3	3	multi-exon	FALSE	canonical	3	47	junction_5	301.169453962383	1	128	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965660	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971549
5159	chr4	+	4268	22	FSM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	-76	4	-76	-4	multi-exon	FALSE	canonical	0	0	junction_5	55.9303502727513	513	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCCGTCTTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	74170096	74324093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_74170324_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
5160	chr16	+	2758	20	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	966.842351660284	3	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAAGGTCTCTGTCTATT	NA	False	NA	NA	False	NA	NA	NA	20470446	20482158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474437_20475299_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478305_20478481_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
5161	chr5	-	2816	13	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-45	-7	intron_retention	FALSE	non_canonical	0	0	junction_10	604.532481206207	9	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCTCTTGCTTGTTAA	2275	False	NA	NA	False	NA	NA	NA	138170125	138162868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165702_138165812_138165897_138166102_138166235_138166319_138166745_138167071_138167210_138167359_138167541_138167610_138167730_138167817_138167987_138168578_138168659_138169987
5162	chr2	+	3132	7	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	28	-8	intron_retention	FALSE	canonical	3	1115	junction_3	96.9616189817165	123	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAACTTGTGTGTTTAT	8597	False	NA	NA	False	NA	NA	NA	72306530	72317229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72314361_72314942_72315657_72316063
5163	chr10	+	4532	25	NIC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	11	0	intron_retention	FALSE	canonical	2	164	junction_12	38.981632961349	302	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	128139214	128157216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
5164	chr1	+	2777	11	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	303.169589503961	12	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406770	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431198_93435603
5165	chr5	-	2580	14	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-69	-7	intron_retention	FALSE	canonical	3	1644	junction_11	196.892155024163	683	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGTAGAGTTTT	2251	False	NA	NA	False	NA	NA	NA	138170149	138162851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
5166	chr13	+	2303	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	591.959871950794	398	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACTCTTGGTATTGAGT	NA	False	NA	NA	False	NA	NA	NA	3588127	3615816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604291_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
5167	chr17	+	2937	15	NIC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-14	-3	combination_of_known_splicesites	FALSE	canonical	2	55	junction_3	461.699323484584	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4857	False	NA	NA	False	NA	NA	NA	87979953	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_87980235_87985635_87985791_87987227_87987507_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
5170	chr16	+	3860	15	NIC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	-3	-9	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_10	187.581927679179	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTACTCGATAAAGGTAAC	1085	False	NA	NA	False	NA	NA	NA	93629119	93672951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
5171	chr2	+	2287	10	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	1876	junction_7	253.395508939321	876	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	130116365	130121233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119545_130119768_130119891_130120075_130120211_130120816
5172	chr3	-	4524	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	18	-1280	18	1280	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	569	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATTTCCAGAGTGGTCAA	NA	False	NA	NA	False	NA	NA	NA	108053444	108013315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
5173	chr9	-	3872	17	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	283.830715392115	12	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	108526549	108480140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492291_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108526427
5175	chr11	-	3373	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9054	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	598.600715273988	1	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	370	False	NA	NA	False	NA	NA	NA	106615274	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106614494_106614704_106615208
5178	chr1	-	2363	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2068.06504195383	379	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287095	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284313_86284464_86284678_86285175_86285828_86285946_86286927
5179	chr6	-	2557	12	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1770.59935222955	3	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	NA	False	NA	NA	False	NA	NA	NA	144994546	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144976071_144976114_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
5180	chr2	+	3290	29	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	291.365364294049	2	66	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146854954	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868343_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878720_146880090_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
5181	chr2	+	3933	31	NIC	ENSMUSG00000038685.19	novel	4135	33	NA	NA	-15	6	intron_retention	FALSE	canonical	1	3	junction_29	58.9985028058622	2	22	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCCATGCAACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	180961516	180997816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997443_180997606_180997716
5183	chr7	+	2997	13	NIC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	0	-1	intron_retention	FALSE	canonical	3	387	junction_12	183.492109276303	219	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACTACACTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	79944226	79965998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
5185	chr9	+	3684	4	Antisense	novelGene_ENSMUSG00000042688.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	48	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGGCGCGGAGAGAAGGC	NA	False	NA	NA	False	NA	NA	NA	75294189	75317288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_75296426_75297444_75297577_75304863_75306039_75317147
5187	chrX	-	2923	11	NIC	ENSMUSG00000025151.17	novel	2884	12	NA	NA	51	-1	intron_retention	FALSE	canonical	3	1240	junction_8	172.597334857755	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTAAGTGTGCTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	93585545	93579082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
5188	chr10	+	2979	13	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	966	junction_7	243.984232186335	4	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1580	False	NA	NA	False	NA	NA	NA	79690457	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
5189	chr5	-	3339	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	462.5	1	70	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135940229_135940409_135940506_135963176
5190	chr16	-	3634	16	FSM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	265	0	-15	0	multi-exon	FALSE	canonical	3	902	junction_2	81.6059366032208	693	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2538	False	NA	NA	False	NA	NA	NA	21981784	21877758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
5191	chr2	-	4227	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	-87	-1744	-3	-2	multi-exon	FALSE	canonical	3	231	junction_5	32.1212569481487	328	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGTTTATAATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	73722986	73646865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
5192	chr19	-	2221	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	56	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1357.45702703508	13	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGCCTGTGAATTATT	NA	False	NA	NA	False	NA	NA	NA	15902367	15882489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15883811_15883920_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
5193	chr16	+	2735	20	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	962.517399921869	3	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGTCTATTTCCTGGG	NA	False	NA	NA	False	NA	NA	NA	20470440	20482165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471055_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474134_20474649_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
5195	chr5	+	7000	34	NNC	ENSMUSG00000034021.16	novel	6598	35	NA	NA	56	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	40.9412668077539	128	12	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAAGTTTGACTTTTAA	NA	False	NA	NA	False	NA	NA	NA	150597347	150733940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717732_150717876_150720033_150720142_150724042_150724483_150724586_150724695_150729038_150729178_150731277
5196	chr1	-	3673	20	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	4	0	intron_retention	FALSE	canonical	3	19	junction_19	224.726352522363	29	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAACACTGATATTAAAG	NA	False	NA	NA	False	NA	NA	NA	63215948	63182762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63214795
5197	chr9	-	3688	21	FSM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	32	-4	-14	0	multi-exon	FALSE	canonical	3	125	junction_19	71.8828734817968	178	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7545	False	NA	NA	False	NA	NA	NA	107749988	107650757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
5198	chr8	-	3802	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21234	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	191.267119785684	1	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTGTGTTACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	81585891	81491063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492986_81493052_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511522_81515103_81515724_81518017_81518244_81526729_81527025_81585823
5199	chr11	+	4761	19	NIC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	0	-22	intron_retention	FALSE	canonical	3	128	junction_6	25.5625594267171	236	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTGTATTTAATGTAG	2847	False	NA	NA	False	NA	NA	NA	78192449	78213261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78192537_78192720_78192847_78194871_78196147_78203940_78204016_78204173_78204267_78204338_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
5200	chr7	-	2854	20	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-16	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	594.370245654733	2	55	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165546	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146700_126146909_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
5201	chr17	+	2868	4	Intergenic	novelGene_24	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	56.3698106751793	4	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTATCTCCGAGTATGC	NA	False	NA	NA	False	NA	NA	NA	17225260	17261810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225389_17257537_17257665_17257906_17257968_17259258
5202	chr7	+	2308	3	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATCGCTGGGTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	110669943	110673409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673243
5203	chr10	-	2987	6	NNC	ENSMUSG00000075232.7	novel	3204	8	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	175.380728701873	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAGAAAGTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	40178182	40163459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169266_40177744
5204	chrX	-	1303	5	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	134	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCGAAGCTCTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	100492193	100487914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100487966_100488291_100488396_100488899_100488939_100489719_100489834_100491198
5205	chr18	-	2606	14	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	84	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	2157.34785129318	1	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649413	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644947_64645054_64645121_64648396_64648480_64649169
5206	chr2	-	4107	13	FSM	ENSMUSG00000027104.19	ENSMUST00000112010.9	4037	13	-89	19	3	-4	multi-exon	FALSE	canonical	3	85	junction_9	68.6093510795398	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAATTATGTTTATAAT	NA	False	NA	NA	False	NA	NA	NA	73722969	73646871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722818
5207	chr15	-	2872	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	972.418891219211	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	38300973	38294656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38295035_38295229_38296409_38296858_38297772_38297865_38298097_38300802
5209	chr13	-	3956	5	NNC	ENSMUSG00000021302.11	novel	870	5	NA	NA	10	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	105.531985672591	60	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATTTCAATGTTAATT	NA	False	NA	NA	False	NA	NA	NA	14237984	14225249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_14228213_14228405_14229041_14229734_14229806_14232380_14232474_14237790
5212	chr1	+	9408	42	NIC	ENSMUSG00000025949.17	novel	6641	42	NA	NA	3	-1895	combination_of_known_junctions	FALSE	canonical	3	51	junction_11	16.2957131693522	156	49	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGATTTCAGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	65225874	65315959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65263320_65263489_65269952_65270013_65272888_65273019_65273412_65273594_65274168_65274244_65277593_65277702_65283554_65283696_65284868_65284996_65285220_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157_65299279_65302038_65302135_65303505_65303590_65304407_65304506_65304920_65305086_65306984_65307045_65307856_65308034_65309031_65309136_65310426_65310556_65311605_65311868_65312191_65312267_65312801
5213	chr11	+	3867	12	NIC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	0	-3	intron_retention	FALSE	canonical	3	130	junction_1	113.132117601757	5	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACACTCTGTCTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	50268591	50277351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50268630_50269117_50269255_50270294_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
5214	chr4	+	5741	19	NNC	ENSMUSG00000040455.18	novel	3977	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	9.19087711930816	213	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTCCCTGGCTTGCT	1	True	NA	NA	False	NA	NA	NA	21776280	21837872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234_21834541_21834795
5215	chr3	-	4592	24	NNC	ENSMUSG00000033222.17	novel	4541	23	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_17	74.8433019633104	241	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTGATGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	100876981	100846177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100867950_100868002_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
5216	chr2	-	6333	26	FSM	ENSMUSG00000026867.20	ENSMUST00000028224.15	5695	26	162	-800	12	-1	multi-exon	FALSE	canonical	2	111	junction_18	27.1558465159899	169	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGCTGCAGGGCTCTTT	5942	False	NA	NA	False	NA	NA	NA	34644411	34566196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607327_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
5217	chr7	-	3232	26	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	290.321543120727	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198229	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192727_44192861_44198178
5222	chrX	+	1276	1	Genic_Genomic	ENSMUSG00000031403.15	novel	NA	NA	NA	NA	2554	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTGCTTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	74152108	74153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_74152100_74153400
5223	chr13	-	563	2	NIC	ENSMUSG00000074863.6	novel	1765	7	NA	NA	0	-6569	combination_of_known_splicesites	FALSE	canonical	3	79	junction_1	0	6	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCCTGGAACTCACTTTG	6808	False	NA	NA	False	NA	NA	NA	62860567	62855576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_62856024_62860451
5224	chr13	-	3247	4	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	5261	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	134.350288425444	9	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATGGGTGCATATTTG	3406	False	NA	NA	False	NA	NA	NA	62855306	62847218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848445_62848528_62849126_62853514_62853576_62853943
5225	chr18	-	2483	14	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	138	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	1728.3242936166	3	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTGTAATCTTCT	337	False	NA	NA	False	NA	NA	NA	35087272	35070466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079068_35082131_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
5226	chr7	-	3625	8	Antisense	novelGene_ENSMUSG00000058638.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	770	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGTGGGCCGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	12584507	12568659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_12569090_12569368_12569455_12570219_12570346_12571014_12571110_12578356_12578832_12580721_12580822_12581896_12582025_12582322
5227	chr16	-	3118	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24805	-4	-9880	-3	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	43	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCCTGCAACCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	22230459	22200061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
5228	chr6	-	3040	18	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	9684	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_17	166.985650917846	35	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	9704	False	NA	NA	False	NA	NA	NA	6207434	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6207335
5229	chr5	+	3738	9	FSM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	16	3	16	0	multi-exon	FALSE	canonical	3	191	junction_1	75.8798392196504	408	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTTGGTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	149121385	149152241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
5230	chr2	+	7185	25	NNC	ENSMUSG00000027326.14	novel	6525	24	NA	NA	-1	-73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	19.2411595862157	198	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATATGTGGTAATGAAAT	7241	False	NA	NA	False	NA	NA	NA	118877629	118935909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603_118903101_118906712_118906852_118907416_118907485_118908378_118908478_118911990_118912107_118917040_118917132_118917956_118918074_118919279_118919368_118924486_118924565_118924746_118924787_118925608_118925711_118927898_118928000_118930242_118930312_118931193_118931304_118932462_118932582_118932979_118933103_118934458_118934806_118935422
5232	chr3	+	2868	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	68	17	68	-17	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	1493	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGACAATACTATTATCT	NA	False	NA	NA	False	NA	NA	NA	19242341	19274964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
5233	chr10	-	3682	10	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	43	194	21	-178	intron_retention	FALSE	canonical	3	1924	junction_2	88.7669997629388	2	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358212	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206
5234	chrX	-	3920	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	768	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_15	149.744182368001	5	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	59223681	59101315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
5235	chr9	+	3716	18	FSM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	-124	14	8	-3	multi-exon	FALSE	canonical	3	922	junction_17	371.198684895057	10	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATGAGCCCTCCGTACT	NA	False	NA	NA	False	NA	NA	NA	21279174	21313085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
5236	chr17	+	3368	18	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	26	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	378.984866995721	357	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATACTCATCTTTACCCA	NA	False	NA	NA	False	NA	NA	NA	71923235	71966005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959855_71960447_71960518_71964335_71964386_71964470
5237	chr11	-	3375	5	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	-2	0	intron_retention	FALSE	non_canonical	0	0	junction_1	600.382534306254	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714841	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96708377_96708533_96711343_96712076_96712236_96712929_96713146_96714770
5238	chr15	-	4344	15	ISM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	906	0	-133	0	3prime_fragment	FALSE	canonical	3	258	junction_12	29.2041547225943	5	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGTAGGATTTTTTGT	859	False	NA	NA	False	NA	NA	NA	96596705	96585272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495
5240	chr4	+	3809	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	3	-15	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_3	606.779385132869	16	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAAAAATCTTG	4709	False	NA	NA	False	NA	NA	NA	135583445	135597204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589048_135589189_135590350_135590514_135590833_135590888_135594436
5241	chr1	+	2411	21	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	315.635782984122	12	15	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAATTTCTGAGAGCCT	3066	False	NA	NA	False	NA	NA	NA	171910397	171949876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933694_171944504_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946760_171948900_171948992_171949266
5242	chr10	+	3866	24	NNC	ENSMUSG00000020064.10	novel	3898	25	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.7939452695704	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACCAGTAGTTTCTATG	NA	False	NA	NA	False	NA	NA	NA	63079679	63153653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_63079950_63081618_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
5243	chrX	-	3471	14	NNC	ENSMUSG00000085396.8	novel	3850	12	NA	NA	3	-1149	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	41.5625286403781	3	71	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGAAAGGACTACTGTGA	NA	False	NA	NA	False	NA	NA	NA	49724135	49649685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49649884_49651556_49651832_49653689_49653845_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662351_49665899_49666291_49666747_49666902_49670279_49670434_49715313_49715387_49716083_49716187_49719767_49719873_49723821
5244	chr6	+	4894	24	NNC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	5	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	91.626512371563	325	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTTGTATTTCACACC	1732	False	NA	NA	False	NA	NA	NA	65019597	65093029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075876_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
5245	chr19	-	3205	17	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	286.603602559354	3	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCATGTGCACAGTTCGT	NA	False	NA	NA	False	NA	NA	NA	40576825	40538706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568411_40576695
5246	chr7	-	3336	9	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	17	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.241831418908	6	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTGGAGCTTACGTTTA	NA	False	NA	NA	False	NA	NA	NA	42155132	42122823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123512_42123694_42124446_42124933_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
5247	chr1	+	1620	9	Antisense	novelGene_ENSMUSG00000034088.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	5	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCCCCCGCCCCCAGC	NA	False	NA	NA	False	NA	NA	NA	93356876	93406537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_93357207_93357818_93358029_93358678_93358890_93359026_93359243_93364817_93365034_93365949_93366106_93368401_93368517_93369910_93369976_93406436
5248	chr7	+	3341	5	FSM	ENSMUSG00000045411.17	ENSMUST00000107950.9	3336	5	-2	-3	0	0	multi-exon	FALSE	canonical	3	709	junction_3	44.6933999601731	1482	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
5249	chr11	-	3213	18	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9018	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	494.62020661203	2	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	406	False	NA	NA	False	NA	NA	NA	106615238	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586752_106586800_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
5251	chr18	+	3696	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	36	1	8	-1	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	1	100	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAGCAGAAGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	35251947	35387831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
5252	chr18	+	3147	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	425.561314147286	4	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251972	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657_35387068_35387588
5253	chr6	-	5492	18	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	17	0	intron_retention	FALSE	non_canonical	0	0	junction_17	135.017184604066	1	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGTGTGTGATTGGAT	9415	False	NA	NA	False	NA	NA	NA	82751418	82702005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737244_82750898
5254	chr9	-	1698	4	NNC	ENSMUSG00000110834.2	novel	461	4	NA	NA	-47	1819	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	29.8477618740315	63	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	124044816	124031168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_124032567_124033755_124033817_124033999_124034127_124044704
5256	chr2	+	3190	15	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	36	-1	intron_retention	FALSE	canonical	3	1260	junction_6	145.798645048434	2	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGATGTCCTTATGTCT	NA	False	NA	NA	False	NA	NA	NA	84867613	84877449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596
5257	chrUn_JH584304v1	-	3202	7	Intergenic	novelGene_4610	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	124	junction_5	319.854350534045	243	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCCAACAATCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	59657	52195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_56985_57152_57410_57500_58563
5258	chrX	-	3014	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.794742517923	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231271	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085721_23085893_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
5259	chr9	+	4123	23	NNC	ENSMUSG00000032267.9	novel	4133	24	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	178.741913069104	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTATGTAGCATGACC	NA	False	NA	NA	False	NA	NA	NA	48896693	48953806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48922565_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
5261	chr5	-	2653	14	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-40	-7	intron_retention	FALSE	canonical	3	1644	junction_11	197.950474949024	25	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCTCTTGCTTGTTAA	2280	False	NA	NA	False	NA	NA	NA	138170120	138162868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
5262	chr4	-	2950	6	NIC	ENSMUSG00000041459.16	novel	7477	6	NA	NA	-16	-2	intron_retention	FALSE	canonical	3	3	junction_5	437.909579707958	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTTTGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	148710796	148701321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148710501
5263	chr9	-	3564	28	NNC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	-1944	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	212.096297719156	6	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATAATGTTGTTTTT	8748	False	NA	NA	False	NA	NA	NA	95395993	95343036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95395892
5264	chr1	+	3474	14	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-13	-4	intron_retention	FALSE	canonical	3	306	junction_3	461.872020492267	2	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGTTTTGTGATCT	NA	False	NA	NA	False	NA	NA	NA	59724116	59750665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
5265	chr16	-	2734	1	NIC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	1902	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21880545	21877811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_21877800_21880500
5266	chr9	-	3884	21	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	3	intron_retention	FALSE	canonical	3	138	junction_5	43.9304848596052	559	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854019	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844818_61851484_61851614_61852631_61852702_61853893
5267	chr4	+	2700	6	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	39.3517471022571	6	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147637735	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661481_147661587_147665716_147665826_147667290_147668854_147668961
5268	chrX	-	4853	9	FSM	ENSMUSG00000031119.5	ENSMUST00000033450.3	2651	9	-73	-2129	-73	2129	multi-exon	FALSE	canonical	3	220	junction_5	29.8493613834534	304	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCAGGTCTGACTGGAC	NA	False	NA	NA	False	NA	NA	NA	51254202	51139768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51142604_51142693_51142870_51143322_51143460_51145536_51145684_51145777_51145909_51151734_51151901_51163170_51163563_51180518_51180678_51253492
5269	chrX	+	3436	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	3	-476	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	967.491539187811	1	112	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20524662	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544507_20544829_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547758_20548181_20548244_20548347_20548449_20548616
5270	chr15	-	2814	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	1	2	1	-2	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	5849	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGATGGTTATGCTTTTAT	378	False	NA	NA	False	NA	NA	NA	36609216	36595906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
5271	chr2	+	3025	19	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	17	-1542	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	188.293842139498	55	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTGTATAATTACATTGA	7249	False	NA	NA	False	NA	NA	NA	23046556	23087730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084710_23084821_23085333_23085421_23086899
5272	chr7	+	1107	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	273	1342	-22	429	multi-exon	FALSE	canonical	3	986	junction_1	0	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGTCAGCTGGCCCCA	348	False	NA	NA	False	NA	NA	NA	44465784	44478894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
5273	chrX	+	4720	5	ISM	ENSMUSG00000015291.11	ENSMUST00000149391.8	2746	9	-11	-4	0	0	intron_retention	FALSE	canonical	3	771	junction_4	40.2399055664896	35	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6206	False	NA	NA	False	NA	NA	NA	73348861	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277
5275	chr6	-	3862	18	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	2	-5	intron_retention	FALSE	canonical	3	759	junction_14	50.8780344988254	3	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTGGTTTCAGTTCTT	7907	False	NA	NA	False	NA	NA	NA	124806396	124791986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
5277	chr11	-	1454	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGAGGCCAGGGGCTGG	5977	False	NA	NA	False	NA	NA	NA	120655214	120653760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120653800_120655200
5278	chr1	-	5742	20	NNC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	78	1	intron_retention	FALSE	canonical	0	0	junction_5	56.0058366566574	4	105	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTTTCCGTTTACTC	NA	False	NA	NA	False	NA	NA	NA	151304109	151243448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151261778_151261899_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
5279	chr9	+	3896	3	FSM	ENSMUSG00000007656.14	ENSMUST00000007800.8	4046	3	129	21	28	-2	multi-exon	FALSE	canonical	3	5814	junction_2	96	810	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAATTTTTATTGATTTTA	NA	False	NA	NA	False	NA	NA	NA	74945128	74967574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_74945244_74959514_74959638_74963916
5280	chrX	+	2847	2	Antisense	novelGene_ENSMUSG00000083327.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTATTATTTTATATC	NA	False	NA	NA	False	NA	NA	NA	103388939	103392112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_103390569_103390894
5281	chr4	+	5354	4	FSM	ENSMUSG00000028211.12	ENSMUST00000029865.4	5404	4	45	5	32	-5	multi-exon	FALSE	canonical	3	122	junction_3	56.8409085860605	333	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACATGTGGAGGATTCT	0	True	NA	NA	False	NA	NA	NA	11156475	11174374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11169709
5282	chr16	-	3114	11	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	232	59	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	296.383957055708	230	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATATGTTTTGTAAGA	6498	False	NA	NA	False	NA	NA	NA	38370352	38345439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370082
5283	chr10	+	2656	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-2	3	intron_retention	FALSE	non_canonical	0	0	junction_10	466.672886863307	20	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1587	False	NA	NA	False	NA	NA	NA	79690464	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698646_79698704_79698811_79698890_79698978
5284	chr4	-	3025	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	104.708192399428	2	105	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9495	False	NA	NA	False	NA	NA	NA	147894273	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845789_147860095_147860286_147891546_147891641_147893953_147894125_147894203
5286	chr16	-	5559	11	Antisense	novelGene_ENSMUSG00000053774.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	324	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCGTGCTGTGCGCAGGC	NA	False	NA	NA	False	NA	NA	NA	32207774	32151039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32151178_32171615_32171765_32178825_32178892_32186159_32186228_32188132_32188245_32191209_32191357_32194042_32194134_32194712_32194842_32200077_32200473_32200582_32200663_32203590
5287	chr7	+	3048	6	NNC	ENSMUSG00000045411.17	novel	2908	6	NA	NA	175	-7	intron_retention	FALSE	non_canonical	0	0	junction_5	301.065707113912	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCCCTCTGTAGGGTGT	NA	False	NA	NA	False	NA	NA	NA	43896416	43901729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036_43900520_43900596
5289	chr15	-	3585	17	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-11	294	intron_retention	FALSE	canonical	3	2899	junction_10	220.988113014592	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAACAGAGTTGAATTAT	NA	False	NA	NA	False	NA	NA	NA	11399698	11383796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391979_11392055_11392121_11392317_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
5290	chr18	+	2854	18	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-71	-2	intron_retention	FALSE	canonical	3	10	junction_10	266.201994226384	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTGGATTCCAAATTTA	6178	False	NA	NA	False	NA	NA	NA	34757988	34765855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
5291	chr7	+	4381	5	NIC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	12	-32	intron_retention	FALSE	canonical	3	115	junction_1	51.0514446416553	29	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATTAGAGCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	41248720	41277925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_41248825_41261099_41261922_41262579_41262676_41274146_41274257_41274676
5293	chr8	-	3132	17	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-25	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	486.665423443047	3	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTAACAATTTTGGATT	NA	False	NA	NA	False	NA	NA	NA	86026123	85987031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990969_85997355_85997447_86000107_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
5294	chr17	-	2929	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-1032	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	211.795292898001	27	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8756	False	NA	NA	False	NA	NA	NA	24470302	24442203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456145_24458849_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
5295	chr19	+	3724	5	Fusion	ENSMUSG00000071652.9_ENSMUSG00000071653.10	novel	500	5	NA	NA	-3	-6	multi-exon	FALSE	canonical	2	4	junction_4	1394.28852824657	8	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAACAGTCCAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	8866259	8875246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774_8868083_8872122
5297	chr18	-	2892	20	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	1833	5969	intron_retention	FALSE	non_canonical	0	0	junction_1	0	12	19	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTCCGCCCACGAGGAA	NA	False	NA	18	True	NA	NA	NA	34765850	34758034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34765430_34765485
5299	chr8	+	3885	11	FSM	ENSMUSG00000034518.15	ENSMUST00000041759.14	4191	11	312	-6	-11	0	multi-exon	FALSE	canonical	3	15	junction_4	33.0128762757806	9	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTTAGCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	75720295	75758606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
5300	chr1	-	4274	19	NNC	ENSMUSG00000041303.8	novel	4582	18	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.5715419104814	290	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6662	False	NA	NA	False	NA	NA	NA	54478168	54435162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_54435792_54436137_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
5302	chr6	+	2742	15	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-34	-4	intron_retention	FALSE	canonical	0	0	junction_7	211.851844650059	137	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGTTGCTGTTGTGTTTT	5403	False	NA	NA	False	NA	NA	NA	125108837	125121712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117843_125117998_125118122_125118236_125118466_125120963
5303	chr2	+	3657	20	NNC	ENSMUSG00000070544.7	novel	3856	21	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	103.228359392298	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCGTCTGCCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	160487907	160564684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_160488183_160488527_160488557_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
5305	chr5	-	3029	9	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23744	45630	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	74	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256652	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208740_108239921_108240020_108241200_108241272_108241989_108242090_108248685_108248848_108251883_108251983_108252127_108252184_108252290_108252396_108254452
5307	chr5	+	2992	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	824.87387924862	2544	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATTTGAACTAAGTAT	NA	False	NA	NA	False	NA	NA	NA	34493671	34510764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574
5308	chr17	-	2301	11	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	2620	7415	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCTGCCGGGAAAGCGG	NA	False	NA	NA	False	NA	NA	NA	13143949	13135284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138318_13139157_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142104_13142297_13142415_13142580_13143145
5309	chr6	-	3048	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-22	-29	intron_retention	FALSE	canonical	0	0	junction_1	279.574416151884	27	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGCTGCCTCGTCATCT	9150	False	NA	NA	False	NA	NA	NA	88495832	88480589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88481742_88481781_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
5310	chr16	-	3486	16	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	44	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	383.204592874355	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATATGAAGTAGGCATTAA	NA	False	NA	NA	False	NA	NA	NA	15455220	15441762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442634_15443425_15443489_15443885_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
5311	chr2	-	3840	34	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.171419825742193	37	12	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCAGGGAGGCGCCTCTA	NA	False	NA	NA	False	NA	NA	NA	180997824	180961790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961904_180962597_180962857_180964108_180964302_180964591_180964687_180965154_180965236_180965474_180965536_180970393_180970472_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981033_180982286_180982387_180983315_180983366_180988618_180988698_180988803_180988886_180990965_180991101_180991255_180991368_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180996233_180996798_180996917_180997100_180997345_180997441_180997604_180997714
5313	chr5	-	3334	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938228_135938413_135940506_135963176
5314	chr2	-	2533	8	NIC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	65	-424	intron_retention	FALSE	canonical	0	0	junction_4	402.959358866324	11	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGAATTTTGGCTCTAT	NA	False	NA	NA	False	NA	NA	NA	154916302	154901653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
5315	chr17	+	3827	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	21	5	-9	-5	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	421	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCTCTTGTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	29171416	29188518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
5316	chr9	-	3265	4	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	246	0	intron_retention	TRUE	non_canonical	0	0	junction_2	2201.93051661491	8	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110773693	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771988_110772038_110772811_110773008
5317	chrX	-	4618	13	NIC	ENSMUSG00000025531.15	novel	4868	15	NA	NA	41	-1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_11	50.7304286290673	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCCACTGTAATGGCTT	NA	False	NA	NA	False	NA	NA	NA	112095165	111950292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112069200_112069268_112095137
5318	chr5	+	2615	5	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-3141	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1155.07543043734	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34505318	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34505425_34506007_34506100_34507253_34507416_34508133_34508183_34508574
5319	chr9	-	3955	21	FSM	ENSMUSG00000032582.15	ENSMUST00000035201.13	3999	21	40	4	-14	0	multi-exon	FALSE	canonical	3	99	junction_19	75.7708882091269	423	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7545	False	NA	NA	False	NA	NA	NA	107749988	107650761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107749847
5320	chr6	-	2985	12	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-14	-34	intron_retention	FALSE	non_canonical	0	0	junction_6	288.812873731518	1509	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTACAAGCTGCCTCGT	9193	False	NA	NA	False	NA	NA	NA	88495789	88480594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489174_88489468_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
5321	chr4	-	2508	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	198.993718493826	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726979	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698432_147699728_147699864_147702873_147702956_147725368_147725463_147726820
5322	chr2	-	5004	12	NNC	ENSMUSG00000041219.15	novel	4958	12	NA	NA	-51	0	intron_retention	FALSE	canonical	3	11	junction_8	111.514739788436	290	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTGTCTGCGTGTTGTA	5961	False	NA	NA	False	NA	NA	NA	113679057	113661836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672352_113673030_113673285_113673591_113673689_113675599_113675671_113678305
5323	chr19	+	4703	8	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-17	-3	intron_retention	FALSE	canonical	3	152	junction_3	39.3664106277711	13	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAATCTTTTATACTGCAT	NA	False	NA	NA	False	NA	NA	NA	10502612	10525014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10502692_10503315_10503425_10509144_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
5326	chr18	-	2754	16	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	35	-219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2184.35894079298	3	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	234	False	NA	NA	False	NA	NA	NA	35087375	35070685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081111_35082065_35082198_35084290_35084459_35085448_35085537_35085729_35085789_35087222
5327	chr10	-	3453	13	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-23	-28	intron_retention	FALSE	canonical	3	1936	junction_7	245.307290284383	10	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGTATTAAAATAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	116899691	116886938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116893183_116893695_116893824_116894002_116894104_116896552_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
5329	chr4	-	3769	20	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-12	3036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	154.448245013699	376	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCTGAGATTAAGTCAGG	NA	False	NA	NA	False	NA	NA	NA	115980868	115948424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115948544_115953461_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
5330	chr12	-	3037	27	Intergenic	novelGene_4408	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	36	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCAGGACAGCACAACCCA	4857	False	NA	NA	False	NA	NA	NA	76366575	76302213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_76302319_76317191_76317274_76326174_76326234_76326926_76326983_76327151_76327290_76327401_76327501_76329658_76329797_76330703_76330813_76335649_76335780_76336201_76336300_76336455_76336632_76337753_76337895_76340166_76340210_76340911_76341019_76341125_76341203_76344254_76344357_76347159_76347237_76348029_76348173_76350405_76350530_76350619_76350755_76353994_76354036_76357680_76357784_76358579_76358755_76361171_76361279_76361718_76361874_76364378_76364472_76366351
5331	chr1	+	3370	15	NNC	ENSMUSG00000023150.15	novel	3511	15	NA	NA	-30	3	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_7	340.474818512054	874	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGCACTGTGGGATTTA	NA	False	NA	NA	False	NA	NA	NA	151220298	151240169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230445_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
5332	chr8	-	3615	17	NIC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	0	6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	144.477060787344	204	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73228979	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
5333	chrX	-	3724	16	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	59	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	195.082478283759	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATCCTTGTGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	149800259	149766144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149767483_149768525_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786644_149797016_149797086_149800196
5334	chr1	-	3834	3	NNC	ENSMUSG00000026112.8	novel	3863	3	NA	NA	-51	-9	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	192	937	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAACATCTTTGTTCTGTT	6324	False	NA	NA	False	NA	NA	NA	37469132	37456173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_37459741_37467422_37467507_37468949
5335	chr6	+	3385	25	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-2	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	145.883366417225	10	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCAGCCTTACTGTCGT	-9	True	NA	NA	False	NA	NA	NA	28480344	28888813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233_28888294_28888374
5336	chr18	-	4779	18	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	-19	-26	combination_of_known_junctions	FALSE	canonical	3	59	junction_14	38.8663756441135	292	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACCAGTAATATTTTCC	-42	True	NA	NA	False	NA	NA	NA	6135989	6024452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
5337	chr15	-	2885	11	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-110	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1020.58044268936	2	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	NA	False	NA	NA	NA	81283905	81247869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249761_81250565_81250655_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
5338	chr2	-	3421	20	Genic_Genomic	ENSMUSG00002075873.1	novel	97	1	NA	NA	-215	42195	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCCTGTTAGCCAATCG	5285	False	NA	NA	False	NA	NA	NA	29821750	29779243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_29779287_29782193_29782281_29783448_29783523_29791086_29791258_29792190_29792354_29793332_29793463_29793987_29794118_29802578_29802652_29804241_29804318_29804406_29804521_29804743_29804930_29805217_29805330_29807621_29807688_29810828_29810896_29811013_29811124_29812225_29812383_29813549_29813650_29815947_29816113_29816713_29816842_29820481
5339	chr2	+	3826	23	NNC	ENSMUSG00000027006.14	novel	4042	23	NA	NA	217	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	62.9922761892609	641	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTCTTTTGAAGATGAT	NA	False	NA	NA	False	NA	NA	NA	80146026	80184387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157000_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
5341	chrX	-	2963	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	407.953964927417	1	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231296	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102012_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
5342	chr7	+	2867	15	NNC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	27	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	401.314574561032	45	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTTGTCTTCAATGGT	NA	False	NA	NA	False	NA	NA	NA	79944287	79966008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960642_79960838_79960929_79961964_79962076_79962779_79962957_79964861_79965441_79965495
5343	chr10	+	3385	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	-52	-3	5	3	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	161	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTTTATGTTGTCATC	NA	False	NA	NA	False	NA	NA	NA	82190097	82215473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
5344	chr1	+	3286	14	NNC	ENSMUSG00000023150.15	novel	3315	15	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	375.486319765928	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGCACTGTGGGATTTA	NA	False	NA	NA	False	NA	NA	NA	151220328	151240169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151231873_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
5346	chr12	-	2402	1	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTGTCCCCAGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	86568396	86565994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86566000_86568400
5348	chr15	+	3402	17	NNC	ENSMUSG00000022394.15	novel	3487	17	NA	NA	4	-3	intron_retention	FALSE	canonical	2	19	junction_8	164.713956603562	2	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGATGATATCAGATG	NA	False	NA	NA	False	NA	NA	NA	81548138	81572513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566153_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
5349	chr17	+	3343	18	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	380.23580372709	381	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGTGTCTCGTGGTGTAT	NA	False	NA	NA	False	NA	NA	NA	71923221	71966025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947272_71948331_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
5353	chrX	-	2949	11	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	433.294368761008	7	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTCTGCTCTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	23231324	23085528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085748_23086099_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732_23227824_23231194
5354	chr15	-	1887	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	350	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	16	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056443	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038115_83038298_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
5355	chr10	+	2551	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	272.669980686079	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACAGATCTGGCCTTGT	7013	False	NA	NA	False	NA	NA	NA	60113472	60138370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135721_60135788_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
5356	chr15	-	4019	12	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	0	55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.224348427053	16	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTATATTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	38519510	38488426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490624_38491874_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497795_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
5357	chr11	+	1046	4	NNC	ENSMUSG00000020898.19	novel	4164	23	NA	NA	140	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	217.091378609715	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGACCTGTGTTCATC	NA	False	NA	NA	False	NA	NA	NA	68925844	68927291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68925854_68926024_68926497_68926592_68926720_68926853
5358	chr4	-	940	9	NNC	ENSMUSG00000028692.15	novel	1420	9	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	561.663363924513	15	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	NA	False	NA	NA	NA	116508637	116493706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496278_116497166_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
5359	chr16	-	4010	8	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	-1	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	166.156061384151	668	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATGTGCGCATGTGCAC	NA	False	NA	NA	False	NA	NA	NA	5073806	5062017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_5064245_5064428_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
5360	chr10	+	1115	1	ISM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	4123	0	2198	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21874687	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_21874700_21875800
5361	chr16	-	4776	19	Antisense	novelGene_ENSMUSG00000022797.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	198	103	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCCTTCTGAAGGCAGCGC	NA	False	NA	NA	False	NA	NA	NA	32451604	32427809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32427852_32431984_32432041_32433384_32433585_32434010_32434218_32435570_32435712_32435912_32436016_32437034_32437148_32437448_32437549_32437851_32437994_32439182_32439340_32439990_32440096_32441879_32441959_32442187_32442262_32443190_32443253_32443583_32443645_32443801_32443867_32445353_32445587_32447291_32447433_32448909
5362	chrX	+	4282	16	NNC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-17	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.308748619872	1	108	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTACAAAAAAATACCTATT	NA	False	NA	NA	False	NA	NA	NA	84092001	84248642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_84092110_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183107_84185337_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076_84246903_84246947
5365	chr2	+	4144	4	FSM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	40	-2025	40	2025	multi-exon	FALSE	canonical	3	122	junction_3	5.43650214343336	342	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGAGGAGGTGTCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	150153390	150170957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089
5366	chr14	+	3418	10	NNC	ENSMUSG00000056234.16	novel	443	4	NA	NA	-422	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	198.967954489109	9	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTGTGTTTGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	31881399	31901207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31881504_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
5367	chr2	+	3450	21	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	141.073907934813	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428733	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428974_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
5368	chr14	+	3401	25	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-6	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	115.170043365837	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTGGTTTCCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56640147	56726893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
5369	chr17	+	4127	12	NIC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-31	-7	intron_retention	FALSE	canonical	3	1213	junction_1	81.323555389303	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATACTTGGTTCTCTAG	NA	False	NA	NA	False	NA	NA	NA	21165717	21186160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_21165846_21171604_21171696_21174876_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500
5370	chr17	-	3023	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	19	-1043	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	211.804117936833	1	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATCCCCAATATTACTGT	8694	False	NA	NA	False	NA	NA	NA	24470364	24442214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450806_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
5371	chr17	-	5632	17	FSM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	0	-1625	0	1625	multi-exon	FALSE	canonical	3	56	junction_6	12.4296457612436	222	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTTGTTCAATTCTTA	2593	False	NA	NA	False	NA	NA	NA	6130016	6090845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
5372	chr5	+	3621	6	Intergenic	novelGene_784	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_5	39.9869978868132	122	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGTTCGTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	104870730	104900353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104870864_104871431_104871610_104895041_104895169_104895405_104895467_104896979_104897892_104898143
5373	chrX	-	3465	13	NNC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	7	5	intron_retention	FALSE	canonical	0	0	junction_12	594.888662552358	5	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAAAAACCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	100129619	100122821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100127881_100128426_100128585_100128877_100129058_100129193
5374	chr14	-	1757	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	186	908	-6	361	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	1663	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8164	False	NA	NA	False	NA	NA	NA	20530015	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
5376	chr4	+	4562	13	FSM	ENSMUSG00000028522.17	ENSMUST00000106857.8	4752	13	141	49	17	-46	multi-exon	FALSE	canonical	3	89	junction_1	18.0662361572323	151	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCCTTCTGCCATTCTG	484	False	NA	NA	False	NA	NA	NA	102976623	103022900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
5377	chr1	-	2809	18	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	806.981367403015	29	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCTGTTGGATTCATTT	NA	False	NA	NA	False	NA	NA	NA	128287378	128259327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272061_128272137_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
5378	chr14	-	4029	8	NNC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	-5	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	250.94897440536	66	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAAAGAACTTCTAGTGT	NA	False	NA	NA	False	NA	NA	NA	47059618	47045615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47047740_47047790_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
5379	chr17	+	3080	7	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-2	-2020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1526.68267822754	117	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCCAGTGGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	13225730	13237001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13225849_13226747_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912_13234920_13235754
5380	chr5	-	2458	14	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-36	-4	intron_retention	FALSE	canonical	3	1644	junction_11	193.793368881614	600	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTGCTTGTTAATAA	2284	False	NA	-125	True	NA	NA	NA	138170116	138162865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
5381	chrX	+	3583	23	NIC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	-13	-101	intron_retention	FALSE	canonical	3	134	junction_1	222.015695409727	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGCCGCAGCCACAGC	NA	False	NA	NA	False	NA	NA	NA	143118851	143152666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
5382	chr4	+	1921	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	34	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	20.5642624202496	64	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576907	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147596801_147596824_147597822_147598028_147598111_147598315_147598898_147599728_147600065
5383	chr2	+	2785	17	FSM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	-46	0	-46	0	multi-exon	FALSE	canonical	3	1260	junction_7	140.688874382447	2679	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867531	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
5387	chr13	+	5750	17	NIC	ENSMUSG00000038518.16	novel	5997	18	NA	NA	-35	-40	intron_retention	FALSE	canonical	3	57	junction_2	189.746376777002	1	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTACTACAAGGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	44884808	45075076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_44885393_44976855_44976992_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
5389	chr5	-	1884	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	260	-10	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	1	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCATTCCAAAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125463279_125463506_125465105_125466760
5390	chr6	-	3140	19	NNC	ENSMUSG00000015112.16	novel	3121	18	NA	NA	-25	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	219.001839160212	1128	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTATTGATTGCTTGCTC	-5	True	NA	NA	False	NA	NA	NA	6217143	6041223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6190769_6190827_6191263_6191318_6216995
5391	chr1	-	3585	23	Antisense	novelGene_ENSMUSG00000098926.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTAGCGGCGGGACCGCCC	NA	False	NA	NA	False	NA	NA	NA	180428564	180396485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180396717_180401214_180401380_180405144_180405262_180406716_180406933_180408096_180408199_180410320_180410439_180411293_180411470_180413405_180413553_180414820_180414965_180415483_180415723_180415920_180415990_180416211_180416346_180416960_180417157_180418780_180418910_180420410_180420498_180421610_180421728_180422216_180422347_180424852_180424954_180425775_180425879_180426514_180426646_180427157_180427223_180427658_180427781_180428018
5392	chr1	-	2985	11	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-2	14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	677.657878283725	6	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCATTTCTTTGCCACAG	NA	False	NA	NA	False	NA	NA	NA	181669928	181642885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647495_181656388_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
5393	chr2	+	3598	21	NNC	ENSMUSG00000070544.7	novel	3856	21	NA	NA	40	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	101.250419752216	50	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAACTTAGCGTCTGCCTG	NA	False	NA	NA	False	NA	NA	NA	160487939	160564679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562925_160563420
5394	chr17	+	3068	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	449.413613006499	97	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4819	False	NA	NA	False	NA	NA	NA	87979915	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020098_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
5395	chr18	+	2969	22	NNC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	-4	16	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	269.410879925481	776	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGCATAATGCCTTTT	9	True	NA	NA	False	NA	NA	NA	3383252	3435401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383398_3384001_3384140_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
5396	chr9	-	3322	16	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	340.412272921461	10	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8715	False	NA	NA	False	NA	NA	NA	31123111	31060852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075942_31080143_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
5398	chr15	+	3905	7	NIC	ENSMUSG00000022471.15	novel	3296	13	NA	NA	-974	-3	intron_retention	FALSE	canonical	3	583	junction_1	56.2198067113955	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATACTGTGCACTTTTCA	NA	False	NA	NA	False	NA	NA	NA	81908615	81924282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81909890_81911425_81911613_81913322_81913492_81913763_81915464_81919877_81919979_81921657_81921772_81923922
5399	chr10	+	2553	11	ISM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	4686	-3	119	3	3prime_fragment	FALSE	canonical	3	966	junction_5	270.489186475171	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	350	False	NA	NA	False	NA	NA	NA	79694946	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
5400	chr12	-	2885	4	Intergenic	novelGene_4333	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	28	junction_2	10.5303793326209	305	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	23455123	23443955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23446506_23447833_23447895_23448096_23448224_23454976
5401	chr2	-	4153	32	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.176684695969408	25	60	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATTGGAACTTCGCGGG	NA	False	NA	NA	False	NA	NA	NA	180997821	180961572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962842_180964097_180964308_180964603_180964687_180965154_180965236_180965474_180965536_180970393_180970471_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981033_180982286_180982387_180983315_180983371_180988621_180988698_180988803_180988886_180990965_180991101_180991255_180991368_180991459_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180996233_180996798_180996917_180997100_180997345_180997441_180997604_180997714
5402	chr11	-	4386	10	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	123.776780367017	4	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	61470519	61408074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61434983_61435155_61436975_61437738_61470392
5403	chr17	-	3208	17	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-5	99	intron_retention	FALSE	canonical	0	0	junction_15	160.439228662288	251	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79244475	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79242188_79242289_79243497_79244303
5404	chr13	+	2977	5	Fusion	ENSMUSG00000113626.2_ENSMUSG00000074867.5_ENSMUSG00000113566.2	novel	419	3	NA	NA	29	519	multi-exon	FALSE	non_canonical	0	0	junction_4	55.0062496449267	115	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	61952108	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_61952220_62254561_62254689_62317567_62317629_62318963_62321179_62321289
5405	chr11	-	2156	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48644148_48644311
5407	chr16	-	3347	16	FSM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	-51	-4	-45	4	multi-exon	FALSE	canonical	3	744	junction_6	120.52477845747	1093	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8065	False	NA	NA	False	NA	NA	NA	4867772	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
5408	chr8	-	4210	24	NNC	ENSMUSG00000031835.17	novel	4336	24	NA	NA	25	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	149.200731308739	1	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTACAAAGCTGGCATGTG	8460	False	NA	NA	False	NA	NA	NA	120285155	120234898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120283906_120283989_120285128
5409	chr4	-	4300	29	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	17	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	278.233164589614	1	116	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGCATTCTTGGTCTCCG	5	True	NA	NA	False	NA	NA	NA	41275099	41194321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202440_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229696_41229849_41233603_41233715_41235516_41235595_41251540_41251672_41275039
5411	chr2	-	2360	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	7	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	4169.46393510879	148	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCATTGCTTTTGTGTGT	3743	False	NA	NA	False	NA	NA	NA	154734744	154713330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714690_154714759_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
5412	chr13	-	4125	12	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	27	-80	intron_retention	FALSE	canonical	3	2035	junction_5	136.524632233936	16	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATCCCTGAATCAAACAC	NA	False	NA	NA	False	NA	NA	NA	97334838	97312918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
5413	chr1	+	4588	11	FSM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	37	1	-6	-1	multi-exon	FALSE	canonical	0	0	junction_1	104.445200942887	25	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGAGTCTTGTGTCTTTG	6030	False	NA	NA	False	NA	NA	NA	152830785	152995006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_152830945_152949542_152949632_152950418_152950487_152952654_152952734_152962082_152962210_152964529_152964611_152966242_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313
5414	chr4	+	3161	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_3	586.974374795584	331	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4676	False	NA	NA	False	NA	NA	NA	135583412	135593126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589048_135589189_135590350_135590514_135590833_135590888_135591039
5415	chr3	+	3277	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	-6	3	-6	-3	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	1507	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836551	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
5416	chr11	-	2888	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	59	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1071.55122447164	22	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACATGTCTGCAGGTTTC	8195	False	NA	NA	False	NA	NA	NA	50216441	50185295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50185947_50186776_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
5418	chr8	+	2623	17	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	414.187891391093	4	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCTGTGTGAATACAAGG	NA	False	NA	NA	False	NA	NA	NA	75836251	75854324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840879_75840916_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
5419	chr3	+	4681	24	Fusion	ENSMUSG00000097532.3_ENSMUSG00000015522.19	novel	2825	18	NA	NA	-335	-1	multi-exon	TRUE	non_canonical	0	0	junction_3	96.1563196424622	246	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTGTGTTGTGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	95334646	95404547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_95334711_95335864_95336134_95337597_95337752_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
5420	chr6	+	6485	39	NNC	ENSMUSG00000063870.13	novel	6537	39	NA	NA	-29	-78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	127.725177291431	13	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAGAACCAA	1760	False	NA	NA	False	NA	NA	NA	125073095	125107470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099082_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
5421	chr2	+	5035	23	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-47	2	combination_of_known_junctions	FALSE	canonical	3	102	junction_1	47.2740384433549	383	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTGCCCTGCCTTCTT	4595	False	NA	NA	False	NA	NA	NA	18069399	18217201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
5422	chr13	+	2259	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	591.959871950794	359	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588128	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601138_3604388_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
5425	chr4	-	5352	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	11	-47	intron_retention	FALSE	canonical	3	105	junction_18	100.421042627873	85	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTCAGAGATAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	115980871	115951507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
5426	chr11	-	3464	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	222.401444165419	646	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	95201083	95165084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
5427	chr4	+	2791	17	Genic_Genomic	ENSMUSG00000028451.13	novel	1018	3	NA	NA	10476	16794	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCGAGAAAAGCCGAATC	NA	False	NA	NA	False	NA	NA	NA	42980421	43000434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_42980637_42980795_42980959_42982535_42982686_42982839_42983146_42983358_42983577_42984303_42984427_42984530_42984692_42985149_42985265_42985929_42986070_42986146_42986278_42988659_42988765_42990745_42990877_42993147_42993279_42993684_42993829_42995895_42996069_42996231_42996344_43000161
5428	chr13	-	3336	17	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-297	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	72.3256524339739	222	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGTAGCTTCGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	119545785	119472066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511291_119518208_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545718
5429	chrX	+	2403	15	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	16	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	712.778742468016	8	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTATTTTGAATTTGCTT	NA	False	NA	-50	True	NA	NA	NA	74139674	74153377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151917_74152487
5430	chr16	-	4036	10	FSM	ENSMUSG00000003166.21	ENSMUST00000012152.13	4045	10	9	0	9	0	multi-exon	FALSE	non_canonical	0	0	junction_7	135.772503989233	539	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	17709548	17658218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
5431	chr10	+	2901	13	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	3	intron_retention	FALSE	canonical	3	18	junction_9	472.699252520388	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1561	False	NA	NA	False	NA	NA	NA	79690438	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
5434	chr10	-	2387	13	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.805619318392	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8737	False	NA	NA	False	NA	NA	NA	128401811	128393636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394633_128394683_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
5435	chr11	-	2233	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGAAAAAAAAAGAATAGAT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48644206_48644280
5436	chr17	-	4489	15	NNC	ENSMUSG00000059208.16	novel	2428	17	NA	NA	0	-7	intron_retention	FALSE	non_canonical	0	0	junction_12	489.036604990269	20	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGAAAGTGGCTTGCC	5767	False	NA	NA	False	NA	NA	NA	33904366	33865219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
5437	chr1	-	2296	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2010.13947233142	2	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287098	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278637_86279072_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
5438	chr11	-	3515	4	NNC	ENSMUSG00000038615.18	novel	3530	4	NA	NA	-29	6	intron_retention	FALSE	canonical	1	16	junction_3	633.561888584428	11	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTAAGTGCACTTTCTCC	NA	False	NA	NA	False	NA	NA	NA	96714982	96708250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713113_96714901
5439	chr2	-	3937	12	FSM	ENSMUSG00000027104.19	ENSMUST00000112016.9	3943	12	-3	9	-3	2	multi-exon	FALSE	canonical	3	57	junction_5	77.3989343681314	11	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722986	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
5440	chr12	-	6018	9	FSM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	40	6	40	-6	multi-exon	FALSE	canonical	3	931	junction_7	74.7277349783867	338	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCATTTCTTGTATTTTG	1285	False	NA	NA	False	NA	NA	NA	91556743	91522041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308
5441	chr8	+	4214	17	FSM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	-30	43	-30	-43	multi-exon	FALSE	canonical	3	631	junction_4	44.0414843499853	414	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTACATTATTGAATTT	7465	False	NA	NA	False	NA	NA	NA	124204611	124230612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124226730_124226847_124227971_124228173_124228253_124228449_124228586
5444	chr12	+	3241	2	Genic_Genomic	ENSMUSG00000021908.11	novel	1878	1	NA	NA	-15	1430	multi-exon	TRUE	non_canonical	0	0	junction_1	0	77	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119224697	119228020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_119227387_119227468
5446	chr2	+	3872	1	NIC	ENSMUSG00000027203.16	novel	1020	7	NA	NA	5143	-834	mono-exon	FALSE	NA	NA	NA	NA	NA	10	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTGAAGGTGAGTTAAGT	NA	False	NA	NA	False	NA	NA	NA	125094962	125098834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_125095000_125098800
5447	chr6	+	4788	26	NIC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	0	-18	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	85.466943317285	19	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCTACTGTATATTTCAA	NA	False	NA	NA	False	NA	NA	NA	83891371	83963833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83954412_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
5448	chr13	-	3359	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	192	-252	192	0	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	152	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	NA	False	NA	NA	NA	111626370	111562213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
5449	chr12	-	3717	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	36	356	36	-356	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	534	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGTGCTTTTTTTGTTT	2714	False	NA	NA	False	NA	NA	NA	59058767	59005524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
5451	chr14	+	5469	9	NIC	ENSMUSG00000021962.10	novel	5576	10	NA	NA	18	0	intron_retention	FALSE	canonical	2	2	junction_7	53.7655500762338	3	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATTGTGTTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	30201609	30249020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30234940_30235055_30240875_30241635_30244684_30244904_30245182
5452	chr8	-	3017	18	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	476.617646151333	1	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86026111	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987274_85987409_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005477_86005584_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
5454	chr7	+	3707	8	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	106.478320108186	893	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACTATAGCGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	12568690	12584507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12569208_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
5456	chr2	+	3646	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	22	0	22	0	multi-exon	TRUE	canonical	3	422	junction_10	74.3091181573454	884	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428713	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
5457	chr6	-	3128	20	NNC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	-6	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	271.029319385854	1073	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGGCTGACTGGTTTCAG	7899	False	NA	NA	False	NA	NA	NA	124806404	124791991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795433_124795630_124796335_124796425_124796949_124797062_124797347_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
5458	chr9	+	2826	22	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	2	intron_retention	FALSE	canonical	3	468	junction_2	40.9233562704157	1706	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCGTCTCTCTGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	108385254	108393137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
5459	chr4	-	3458	26	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	-51	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	376.573486055511	2	23	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTCTCCGTGTTCTGGC	NA	False	NA	NA	False	NA	NA	NA	41251670	41194312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41194961_41195324_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199489_41199586_41199715_41199903_41201463_41201534_41202273_41202353_41206880_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41245455_41245493_41251534
5460	chr4	+	4088	12	NIC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	68	-371	intron_retention	FALSE	canonical	3	1466	junction_8	130.155469654532	30	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGGAGTCTCGTG	781	False	NA	NA	False	NA	NA	NA	129083620	129113029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
5461	chr15	-	2703	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-57	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	711.346005041772	384	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283852	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248186_81248432_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
5462	chr6	-	4308	31	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	27	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	127.063081446448	1	90	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGACTTTTAAGCATCCT	3520	False	NA	NA	False	NA	NA	NA	125168539	125144982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148495_125148832_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
5463	chr11	-	3433	5	NIC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	308.372339875028	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	40646138	40639378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_40641887_40642087_40642187_40642930_40643185_40644634_40644896_40645827
5464	chrUn_JH584304v1	-	3001	7	Intergenic	novelGene_4657	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	73	junction_3	269.274797681971	72	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAACTACCATAGCTTT	NA	False	NA	NA	False	NA	NA	NA	59695	52675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55212_55293_55702_56985_57152_58563_58836_59591
5466	chr17	-	1357	1	Intergenic	novelGene_295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATCTTACAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	71288154	71286797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_71286800_71288200
5467	chr8	+	4168	15	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	19	-19	intron_retention	FALSE	non_canonical	0	0	junction_1	440.093311070481	3	96	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTCAGTGGACCCAGTA	NA	False	NA	NA	False	NA	NA	NA	75836222	75854297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836715_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
5468	chr17	+	8575	21	FSM	ENSMUSG00000039512.13	ENSMUST00000114849.3	8634	21	53	6	53	-6	multi-exon	TRUE	canonical	3	66	junction_6	13.1601671721905	107	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCATTGCTCCTCGTGTG	5838	False	NA	NA	False	NA	NA	NA	28075467	28119009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28075769_28095636_28095800_28095897_28095937_28096295_28096388_28098197_28098388_28098624_28098766_28099108_28099280_28100402_28100590_28102994_28103082_28103407_28103579_28103886_28104027_28104380_28104523_28104874_28105069_28105236_28106667_28108973_28109171_28112114_28112267_28112352_28112504_28113520_28113784_28114243_28114353_28114433_28114535_28114855
5469	chr3	+	4213	14	NIC	ENSMUSG00000027680.16	novel	2127	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	506	junction_13	204.312905401518	21	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATGTTATTTTGTT	4849	False	NA	NA	False	NA	NA	NA	34074246	34123486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34118469_34123065
5470	chr15	-	2904	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	120	9	-3	-9	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	89	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTGCAGAGGCCCGGAA	NA	False	NA	NA	False	NA	NA	NA	81614084	81588462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
5471	chr11	-	3589	9	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	267.614432299531	318	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1312	False	NA	NA	False	NA	NA	NA	20062937	20012303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030733_20041294_20041368_20044229_20044446_20050822_20050934_20062804
5472	chr7	-	1095	6	NNC	ENSMUSG00000003435.10	novel	3096	22	NA	NA	1749	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	349.692093133374	1	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28016468	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016378
5473	chr13	-	4805	4	FSM	ENSMUSG00000058093.14	ENSMUST00000012873.16	4835	4	30	0	10	0	multi-exon	FALSE	canonical	3	23	junction_3	17.2497987105808	112	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTTGGTGTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	67757796	67737557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757691
5474	chr15	-	1212	9	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	5873	6	-762	-6	3prime_fragment	FALSE	canonical	3	1612	junction_5	94.6763401014213	138	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTTCGTCCTGTGCT	8618	False	NA	NA	False	NA	NA	NA	77849140	77843203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102
5475	chrX	+	3246	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	40	-724	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	217.886371933584	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799463	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809578_150810879_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
5476	chr2	-	4301	14	NNC	ENSMUSG00000027104.19	novel	2396	14	NA	NA	329	2	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_13	82.2570656665493	23	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722545	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722307
5477	chr5	+	3899	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	829.607618709235	2	155	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228775_108228891_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241270_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
5478	chr11	-	3238	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-8360	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_14	442.468216315002	3	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	1064	False	NA	NA	False	NA	NA	NA	106614580	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106614494
5479	chr15	+	1372	11	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	5245	0	-275	5prime_fragment	FALSE	canonical	3	1727	junction_10	116.36670486011	29	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTTGCATCGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	81756684	81794089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042
5480	chr2	+	2862	7	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	1993	junction_1	228.159057579478	157	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	NA	False	NA	NA	NA	130116365	130121226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130120211_130120816
5481	chr16	+	4579	11	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-6	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	189.608966032727	80	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTATGTTGAAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	84631806	84660653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262_84657926_84658004
5482	chr8	+	3636	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	0	-316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	169.630210471184	1268	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAAGTAAAGGAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	69246625	69281744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928_69280809_69281010
5483	chr15	-	2956	4	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1026.97711756397	3	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACAGTGAGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	38300956	38294660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296409_38296858_38297772_38297955_38298097_38300802
5488	chr1	+	5766	10	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	19	-11	intron_retention	FALSE	non_canonical	0	0	junction_8	224.100561642302	21	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAAAAAAAGTGTGCTGA	5632	False	NA	NA	False	NA	NA	NA	34478950	34488426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34486993_34487037_34487947_34488029
5489	chr18	+	2768	2	FSM	ENSMUSG00000057561.11	ENSMUST00000235973.2	2651	2	916	-1033	627	0	multi-exon	FALSE	canonical	3	1710	junction_1	0	44	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	46731707	46743278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46731768_46740570
5490	chr2	-	2712	9	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	28	-849	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	196.455744062117	1679	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCTCTGAACAAACTCAG	NA	False	NA	NA	False	NA	NA	NA	121337118	121323240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121323322_121323438_121324067_121324558_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
5493	chr2	+	3552	7	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	30	-1	intron_retention	FALSE	canonical	3	1115	junction_3	92.2129178706661	93	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8599	False	NA	NA	False	NA	NA	NA	72306532	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72314361_72314942_72315093_72315519_72315657_72316063
5495	chr9	+	3519	20	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	565.311670955553	342	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	21279166	21316656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300750_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
5496	chr1	+	2956	10	NNC	ENSMUSG00000116048.2	novel	3192	12	NA	NA	21	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	313.650115673067	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATATTAAATGAGTAGTC	NA	False	NA	NA	False	NA	NA	NA	93406735	93437444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406795_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
5497	chr6	+	3340	15	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	225	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCGGCCCGCGGCCGCC	1082	False	NA	NA	False	NA	NA	NA	122295261	122316529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298827_122299043_122299283_122299431_122299965_122300777_122302418_122302908_122309478_122309637_122310249_122310400_122311028_122311112_122311933_122312042_122313815_122313974_122316459
5498	chr6	+	2464	9	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATACAACCACTCTTAC	NA	False	NA	NA	False	NA	NA	NA	144944889	145022055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144946031_144950076_144950152_144953341_144953477_144964914_144965084_144978510_144978629_144980266_144980378_144985160_144985364_144993018_144993089_145021613
5499	chr9	-	3709	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	-84	9	-60	-7	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	556	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCTGAGCACCTTGTGT	8655	False	NA	NA	False	NA	NA	NA	31123171	31060861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
5500	chr2	-	2945	20	NIC	ENSMUSG00000027620.17	novel	2127	18	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	21	junction_15	1015.96738283849	1794	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCACAAGAAAATTTTCGT	NA	False	NA	NA	False	NA	NA	NA	156022106	155989171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156018322_156018378_156019255_156019306_156020799_156020873_156021096_156021161_156021806
5502	chr9	+	2845	19	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	20	0	intron_retention	FALSE	non_canonical	0	0	junction_9	128.10293170381	78	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385311	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388734_108388818_108389681_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392432_108392994
5503	chr5	-	3302	18	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	5	-5	intron_retention	FALSE	canonical	3	50	junction_17	324.805078624621	4	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAAGCTGTTGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	149559798	149540314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559623
5504	chr8	+	3454	11	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	52808	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	315.361443426428	1	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGAGGCTCACTTGA	9246	False	NA	NA	False	NA	NA	NA	107383582	107396874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107383601_107384371_107384540_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
5506	chr11	-	4545	6	NNC	ENSMUSG00000038615.18	novel	4654	5	NA	NA	27	-4	intron_retention	TRUE	non_canonical	0	0	junction_4	504.843975897504	1	123	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGATTCAGCTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	96720754	96708260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96718262_96718309_96719050_96720644
5507	chr14	-	2718	12	NIC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	16	1444	intron_retention	FALSE	canonical	3	685	junction_9	62.3778144498282	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCCAACCGAGGTAGGTT	4843	False	NA	NA	False	NA	NA	NA	54754834	54747013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
5508	chr3	-	2279	7	NNC	ENSMUSG00000027506.16	novel	673	7	NA	NA	-13	88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1283.96721358279	12	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGAGGACTGGAACTGTA	NA	False	NA	NA	False	NA	NA	NA	9069551	8994569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9068347_9068459_9069464
5509	chr11	-	3605	10	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	-21	intron_retention	FALSE	canonical	0	0	junction_8	1313.83085143136	1	90	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAGATATTTGAAGACT	9654	False	NA	NA	False	NA	NA	NA	106679320	106672394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677114_106677744_106677901_106679098
5511	chr3	-	2070	5	ISM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	-257	13	-174	-2	intron_retention	FALSE	canonical	3	1706	junction_4	132.201550671692	236	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGGTCTTAGTCTTGG	6933	False	NA	NA	False	NA	NA	NA	89906261	89902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693
5512	chr2	-	2302	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-25	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5372.54735773554	3	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3711	False	NA	NA	False	NA	NA	NA	154734776	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730188_154730281_154734609
5513	chr10	+	2535	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	717	junction_1	86.156601604288	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21870581	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21874149_21874558
5514	chr6	-	2301	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	52	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1180.44491542262	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTGGATTTGAATCTT	8537	False	NA	NA	False	NA	NA	NA	145021858	144944881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144944938_144945142_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
5515	chr2	+	4295	18	ISM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	17	1	0	-1	intron_retention	FALSE	canonical	3	323	junction_9	43.3777963708748	243	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATTTGAAACCTTGTACA	3593	False	NA	NA	False	NA	NA	NA	126549279	126601216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039
5516	chr3	-	4457	6	Antisense	novelGene_ENSMUSG00000047213.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGGCCTCGGGCTCCGCCC	NA	False	NA	NA	False	NA	NA	NA	16270329	16237324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_16237699_16241125_16241280_16243641_16243724_16257346_16257384_16257989_16259588_16268117
5517	chr13	+	3340	27	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	488.751326819125	10	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATACTGTGTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	49835608	49887734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876251_49876468_49876553_49878093_49878138_49887134
5518	chr6	-	2841	11	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-3	-6	intron_retention	FALSE	non_canonical	0	0	junction_4	3358.10089782901	1	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAATTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51446809	51438109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51440474_51441068_51441192_51441407_51441442_51442146_51442179_51443155_51443203_51443282_51443385_51443474_51443683_51443885_51444033_51444164_51444276_51446650
5519	chr1	+	1574	3	ISM	ENSMUSG00000056211.14	ENSMUST00000190288.2	6449	8	28008	-1	-379	0	3prime_fragment	FALSE	canonical	3	218	junction_2	18	1	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	7104	False	NA	NA	False	NA	NA	NA	128162736	128165473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_128162886_128163278_128163364_128164133
5520	chr10	-	1601	1	Antisense	novelGene_ENSMUSG00000009291.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTGCATTCCCAGGAAAC	NA	False	NA	NA	False	NA	NA	NA	77434561	77432960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_77433000_77434600
5522	chr18	+	3055	22	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	27	0	intron_retention	FALSE	non_canonical	0	0	junction_19	158.438053446908	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9019	False	NA	NA	False	NA	NA	NA	32970332	32999453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32996264_32996316_32997705_32997894_32998905
5523	chr11	-	2035	4	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48643824_48643907_48644153_48644353
5524	chr2	-	3505	17	NIC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	8	-3	combination_of_known_junctions	FALSE	canonical	3	55	junction_15	70.9506595723394	419	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTCAGTGGCCGCTCT	NA	False	NA	NA	False	NA	NA	NA	155953847	155913769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945350_155953705
5525	chr6	-	2975	19	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	163.321853338057	149	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	1	True	NA	NA	False	NA	NA	NA	6217073	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042060_6042103_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
5526	chr11	-	3518	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	5	24	0	-7	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	5	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGATGATTCAGCTTAA	NA	False	NA	NA	False	NA	NA	NA	96714834	96708263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
5528	chr6	+	4079	23	NNC	ENSMUSG00000029771.13	novel	403	2	NA	NA	-316	67961	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	99	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCGGGCCGGAAGTGGC	3761	False	NA	NA	False	NA	NA	NA	29540828	29609831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29541865_29543260_29543364_29551854_29551964_29554793_29554964_29555153_29555312_29556977_29557071_29558749_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565261_29565661_29565742_29568856_29568992_29571033_29571127_29572584_29572692_29575003_29575154_29578463_29578603_29579520_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589227_29609362
5529	chr1	-	6132	40	NNC	ENSMUSG00000026116.12	novel	6546	41	NA	NA	50202	-3	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_6	56.680320898177	351	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGAATTGTTTTGTTTT	3656	False	NA	NA	False	NA	NA	NA	36928406	36831277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36832287_36833124_36833280_36833884_36833983_36834181_36834279_36834375_36834498_36835242_36835361_36838022_36838173_36838359_36838485_36840905_36841034_36843548_36843728_36846964_36847558_36847907_36848067_36849361_36849548_36850488_36850676_36851241_36851385_36851637_36851790_36854535_36854603_36854967_36855078_36855189_36855329_36857738_36857857_36857973_36858050_36858143_36858297_36862147_36862235_36863796_36863902_36864292_36864428_36864509_36864621_36866091_36866263_36866342_36866497_36867145_36867255_36868646_36868756_36872576_36872639_36873696_36873754_36873842_36873994_36877039_36877121_36879469_36879593_36880674_36880792_36893924_36894049_36911592_36911662_36920414_36920456_36928344
5530	chr6	-	4222	30	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	31	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	194.217843539434	3	76	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCATCCTGTCCTGGCTG	3524	False	NA	NA	False	NA	NA	NA	125168535	125144972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151313_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158133_125160873_125161023_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
5531	chr14	+	3547	23	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-9	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_17	118.297356110819	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGCCCTGCTGGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	32043966	32070102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
5532	chr17	-	3260	23	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	175	-2	combination_of_known_junctions	FALSE	canonical	1	4	junction_22	199.265308629326	102	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCATGTGCCTGTGGGGTG	NA	False	NA	NA	False	NA	NA	NA	36280076	36267712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36279859
5533	chr1	+	3623	23	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-3	-252	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	604.895688022679	1	109	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3139	False	NA	NA	False	NA	NA	NA	180396485	180428565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401385_180405147_180405264_180406724_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
5535	chr12	-	3506	6	NNC	ENSMUSG00000113123.3	novel	734	5	NA	NA	26557	3472	intron_retention	TRUE	non_canonical	0	0	junction_1	4.71593044902064	5	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACTCTTTGTATTTGGT	NA	False	NA	NA	False	NA	NA	NA	22646563	22632417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_22633782_22633924_22635035_22635202_22635913_22637248_22637310_22637509_22637637_22646429
5537	chrX	+	2413	11	Antisense	novelGene_ENSMUSG00000025151.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGTGGGCGGAGCCTCG	NA	False	NA	NA	False	NA	NA	NA	93579079	93584068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93579286_93579467_93579850_93580477_93580595_93580899_93580969_93581151_93581193_93581282_93581361_93581578_93581672_93581789_93581872_93582052_93582114_93582211_93582890_93583462
5538	chr15	-	2692	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	1528.4851702112	820	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	378	False	NA	NA	False	NA	NA	NA	36609216	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557_36608899_36609023
5539	chr3	-	3829	24	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	-6	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	166.170921184361	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTTATGTGTCCTGT	1854	False	NA	NA	False	NA	NA	NA	27207983	27151373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199115_27201042_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
5540	chr7	+	4379	30	NNC	ENSMUSG00000034867.17	novel	4284	29	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	71.3621501944868	275	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCGTGCCATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	35285692	35338650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302587_35302708_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
5541	chr17	-	3731	5	Fusion	ENSMUSG00000069743.6_ENSMUSG00000078546.9	novel	3686	5	NA	NA	-20	-2	multi-exon	FALSE	canonical	0	0	junction_3	22.9019649811976	1	71	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACAACTCGAACTTGGTT	NA	False	NA	NA	False	NA	NA	NA	22128640	22035867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_22039170_22040050_22040178_22042824_22042873_22063404_22063553_22128534
5542	chr6	-	3667	4	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	-7	-165	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	365.396892281378	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTATAGATAACATGTTAGC	4230	False	NA	NA	False	NA	NA	NA	35516741	35486005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35489253_35498834_35498919_35499616_35499706_35516494
5544	chr5	-	2274	5	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	-8	-525	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3603.41874995122	7	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGTTAAATGACTTTCA	6756	False	NA	NA	False	NA	NA	NA	148989858	148984036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987515_148989709
5546	chr2	+	3782	26	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	-25736	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	331.072134738036	1	68	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAGAGCCTGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	30207215	30234266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30207320_30211893_30212047_30212183_30212311_30212497_30212506_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226945_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
5547	chr7	+	2797	14	NNC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	307.567474677167	8	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79944222	79966002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950135_79950859_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
5548	chr10	+	4335	12	NIC	ENSMUSG00000037608.17	novel	5437	13	NA	NA	0	-7	intron_retention	FALSE	canonical	3	695	junction_10	115.762509810758	36	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCGGTATCATATTTGTA	2793	False	NA	NA	False	NA	NA	NA	20188217	20216001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20209319_20210244_20210392_20215454_20215668_20215797
5549	chrUn_JH584304v1	-	3176	5	Intergenic	novelGene_4656	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_4	148.706716391695	439	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAACTACCATAGCTTT	NA	False	NA	NA	False	NA	NA	NA	59032	52675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985_57152_58563
5550	chr10	+	4077	26	NNC	ENSMUSG00000020064.10	novel	3914	26	NA	NA	-40	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	95.8636865554418	1	77	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTAGTTTCTATGGTTGT	NA	False	NA	NA	False	NA	NA	NA	63079649	63153658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63125544_63125679_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
5551	chr3	+	4721	17	NNC	ENSMUSG00000007379.16	novel	4879	18	NA	NA	36	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	67.4637634215584	76	75	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCCCACAGATCTCTTG	NA	False	NA	NA	False	NA	NA	NA	103010011	103077051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103070289_103070413_103072323_103072561_103073728_103073816_103075086
5553	chr4	-	5096	20	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-12	-395	intron_retention	FALSE	canonical	3	16	junction_18	140.349583327369	73	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTATTTGATGTGTGGGC	NA	False	NA	NA	False	NA	NA	NA	115980868	115951855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980440_115980514_115980675
5554	chr11	-	3689	19	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	632	junction_7	76.9862902657927	4	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATAACTTTTCTGATA	NA	False	NA	NA	False	NA	NA	NA	106146625	106139972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
5555	chr15	-	2528	21	NNC	ENSMUSG00000034022.9	novel	4410	37	NA	NA	60	-62	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	175.024134050136	1	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTGCTCTGGTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	76484922	76480078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480108_76480208_76480348_76480419_76480523_76480662_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881
5557	chr2	-	3769	4	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	0	-92	intron_retention	FALSE	canonical	3	182	junction_3	33.9247533357118	390	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATGCAGGCTTACTGT	NA	False	NA	NA	False	NA	NA	NA	106804742	106792963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804616
5559	chr15	+	5315	3	FSM	ENSMUSG00000034333.16	ENSMUST00000041297.15	5425	3	115	-5	15	5	multi-exon	FALSE	canonical	3	163	junction_1	12	223	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGATGATGGCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	88635977	88668724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_88636006_88638962_88639137_88663611
5560	chr11	+	5628	15	NNC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-29233	-1462	intron_retention	FALSE	non_canonical	0	0	junction_1	0	779	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAACGTCCGTCTCCTTCTC	7002	False	NA	NA	False	NA	NA	NA	5019692	5049045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_5020104_5020227_5020479_5020623_5020723_5020994_5021157_5021517_5021642_5022810_5022942_5028472_5028591_5028918_5032432_5033357_5033572_5035895_5036064_5037959_5038145_5041856_5041982_5043679_5043733_5043868_5043906_5049008
5561	chr19	-	3207	20	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	24	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	370.27835602669	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGATTCTCCCCCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	40576789	40538752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40538847_40538901_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546192_40551341_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
5563	chr19	+	2438	18	Antisense	novelGene_ENSMUSG00000024853.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGGAAAGCCAAGGCCAAG	NA	False	NA	NA	False	NA	NA	NA	5324321	5343243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5324558_5324821_5325004_5325089_5325192_5329296_5329401_5329499_5329641_5329869_5329978_5333670_5333781_5333887_5333975_5334601_5334755_5336218_5336445_5336604_5336685_5336837_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338444_5341333_5341450_5343106
5564	chr2	+	2684	10	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	433	junction_9	644.354936312757	336	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
5565	chr9	-	4024	22	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-8	-1	combination_of_known_junctions	FALSE	canonical	3	32	junction_21	113.526006690147	385	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTTTGTTAAAGTTTT	7582	False	NA	NA	False	NA	NA	NA	107749951	107650762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107738821_107738929_107749847
5566	chr9	+	3994	6	Antisense	novelGene_ENSMUSG00000042688.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	64	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGGCCTCGCAGAGGCA	NA	False	NA	NA	False	NA	NA	NA	75294222	75317305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_75296428_75297446_75297628_75300697_75300846_75302812_75302936_75304859_75306039_75317147
5567	chr3	+	754	1	FSM	ENSMUSG00000105692.2	ENSMUST00000199915.2	2740	1	2132	-146	2132	146	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTGCTTACATGTT	3154	False	NA	NA	False	NA	NA	NA	89119863	89120617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89119900_89120600
5568	chr6	-	3414	20	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	23	-6	intron_retention	FALSE	canonical	2	5	junction_19	268.671482764676	5	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGACTGGTTTCAGTTCT	7955	False	NA	NA	False	NA	NA	NA	124806348	124791987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124804977_124805103_124806247
5570	chr17	-	3094	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-21	-1034	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	210.828091996774	1354	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTACTGTGCTTCAACT	8716	False	NA	NA	False	NA	NA	NA	24470342	24442205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462216_24462321_24463453_24463561_24468224_24468380_24470268
5571	chr12	-	2858	4	Intergenic	novelGene_4334	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	18.9267594221045	2	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACTTATTTTTATTGA	NA	False	NA	NA	False	NA	NA	NA	23455093	23444001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23446506_23447833_23447895_23448096_23448273_23454976
5572	chr19	+	4806	22	NNC	ENSMUSG00000012443.5	novel	4819	22	NA	NA	-21	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	80.3619645819708	289	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCGTGCTGCCTGTACA	NA	False	NA	NA	False	NA	NA	NA	37364829	37410306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395474_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706
5573	chr15	-	3074	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	-32	2	-32	1	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	1	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAGTGAGTCTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	38300982	38294658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
5574	chr19	+	3200	11	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	242.070320361667	22	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAATGTTGTTATTCAT	NA	False	NA	NA	False	NA	NA	NA	10160402	10174234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171145_10171671_10171762_10171852_10171979_10172234
5575	chr11	+	3408	12	NNC	ENSMUSG00000059248.14	novel	3616	12	NA	NA	-13395	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	265.303973485335	34	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117109715	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117109758_117181223_117181336_117181403_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
5576	chr7	-	2493	19	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-12	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	637.241353970281	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165542	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162195_126163711_126163778_126163874_126163941_126165250_126165392_126165519
5577	chrX	+	4538	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12801	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_13	108.586186966851	1	89	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGCCTTGGATGTTATT	8018	False	NA	NA	False	NA	NA	NA	159932944	160041209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
5579	chrX	+	2535	18	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1103.01623587733	17	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538070_20538198_20538349_20545787_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
5580	chrX	-	6842	7	NIC	ENSMUSG00000055780.11	novel	4120	8	NA	NA	62	2843	combination_of_known_splicesites	TRUE	canonical	0	0	junction_5	7.74058567982208	87	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATGTGTTGTTTCAAATA	NA	False	NA	NA	False	NA	NA	NA	50889959	50839992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50889689_50889806_50889878
5582	chr3	+	3898	9	NIC	ENSMUSG00000028180.19	novel	2924	10	NA	NA	15	3	intron_retention	FALSE	canonical	3	697	junction_7	86.7308156020684	10	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGTGTTGTTTATTAG	NA	False	NA	NA	False	NA	NA	NA	157240039	157253976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157248882_157250600_157250760_157252311
5583	chr1	-	3830	3	NNC	ENSMUSG00000026112.8	novel	3863	3	NA	NA	-42	-4	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	192	893	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTTGTTCTGTTTCAAG	6333	False	NA	NA	False	NA	NA	NA	37469123	37456168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_37459741_37467422_37467507_37468949
5585	chrX	-	3123	26	Intergenic	novelGene_4068	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	614	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGAATTGCGGGAGCGGAT	NA	False	NA	NA	False	NA	NA	NA	143152666	143101020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101116_143102892_143103054_143105003_143105145_143119105_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256_143134372_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147101_143147928_143147972_143150894_143150933_143152553
5586	chrX	-	3944	29	NNC	ENSMUSG00000031161.16	novel	4069	29	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_28	77.9875709615949	414	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGAAAGTGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	7814066	7796364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813945
5587	chr9	-	4185	23	FSM	ENSMUSG00000032480.18	ENSMUST00000198425.5	3968	23	-219	2	-9	0	multi-exon	FALSE	canonical	3	120	junction_20	140.114150629448	326	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTGCTGTCCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	109946709	109913389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944103_109944230_109944558_109944651_109946425
5588	chr7	+	3149	6	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	301.065707113912	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
5589	chr18	+	3316	10	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	588.024564868585	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATCTGTTGTCTTATAA	NA	False	NA	NA	False	NA	NA	NA	67908075	67928552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219_67926373_67926463
5591	chr18	+	2940	4	FSM	ENSMUSG00000057561.11	ENSMUST00000238168.2	2012	4	34	-962	10	0	multi-exon	FALSE	canonical	3	13	junction_1	796.694141785639	177	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	46730801	46743278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731117_46731224_46731707_46731768_46740570
5592	chr5	+	3154	3	Antisense	novelGene_ENSMUSG00000051391.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	78	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGAGAAGGAGGCGGCAC	2284	False	NA	NA	False	NA	NA	NA	135937388	135963397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135938118_135938301_135940501_135963171
5593	chr11	-	4404	11	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	4	-5	combination_of_known_junctions	FALSE	canonical	3	20	junction_8	140.350418595742	44	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGATGTGGGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	61470507	61408080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61434983_61435155_61436975_61437738_61470392
5594	chr5	+	4087	8	NIC	ENSMUSG00000041264.17	novel	3757	9	NA	NA	-18	0	intron_retention	FALSE	canonical	3	191	junction_1	68.7640152690226	2	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121507	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_149121617_149124517_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
5595	chr4	-	2672	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	381	-5	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	100.961316849574	3	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	9904	False	NA	NA	False	NA	NA	NA	147893864	147838435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147891546_147891641_147893775
5596	chr3	-	2830	9	NIC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	23	23	intron_retention	FALSE	canonical	3	2549	junction_5	100.889094430469	17	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCCCAGACTTGAACCTT	NA	False	NA	NA	False	NA	NA	NA	108352436	108333904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
5597	chr15	-	4290	36	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	138.274899222896	1	90	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACGAGTGTGTGGTCATT	NA	False	NA	NA	False	NA	NA	NA	76491728	76480009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484587_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
5598	chr19	+	3134	12	ISM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	2742	200	2658	-198	3prime_fragment	FALSE	canonical	0	0	junction_10	257.474832277251	2	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGATGTGACCATTGGC	2727	False	NA	NA	False	NA	NA	NA	46067150	46073769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
5599	chr4	-	5972	17	NNC	ENSMUSG00000038047.19	novel	6158	17	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	46.3221987145472	228	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTGGAATTCCCTGTA	NA	False	NA	NA	False	NA	NA	NA	86530267	86497093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86500256_86501117_86501952_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
5600	chr5	-	6132	27	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	0	1477	intron_retention	FALSE	canonical	3	318	junction_9	27.9418246027381	621	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATTTTATGGGAGTTG	NA	False	NA	NA	False	NA	NA	NA	108777621	108715799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
5601	chr10	-	3935	6	NIC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	0	1	intron_retention	FALSE	canonical	3	1013	junction_1	108.654314226357	70	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGAATCTCTTTCATATT	8248	False	NA	NA	False	NA	NA	NA	128540899	128533806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128535080_128535340_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
5602	chr17	-	3798	5	NIC	ENSMUSG00000024097.12	novel	1921	7	NA	NA	73	0	intron_retention	FALSE	canonical	3	2057	junction_3	120.141583142557	13	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	80514659	80508740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509634_80510119_80511662_80511741_80512868_80513276_80513458_80514603
5603	chr14	-	1958	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	-29	546	-29	-544	multi-exon	FALSE	canonical	3	610	junction_1	26.6868413267663	9	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTCCTGCAGCCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	40688793	40628947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
5605	chrX	-	3171	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.794742517923	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTCTGCTCTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	23231302	23085528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085758_23085799_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
5606	chr14	-	3309	9	ISM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	55228	10	-11555	-10	3prime_fragment	FALSE	canonical	3	460	junction_1	45.4972526643093	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATATGATAAAACATTGA	9795	False	NA	NA	False	NA	NA	NA	61622095	61602669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036
5607	chr8	-	941	1	Genic_Genomic	ENSMUSG00000039633.8	novel	NA	NA	NA	NA	32514	2	mono-exon	FALSE	NA	NA	NA	NA	NA	30	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCCCCCCTTTAAATCG	NA	False	NA	NA	False	NA	NA	NA	36684156	36683215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_36683200_36684200
5608	chr19	-	3320	18	NIC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	1	17	junction_10	288.241008346719	188	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576825	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
5610	chrX	-	4131	29	FSM	ENSMUSG00000031161.16	ENSMUST00000033501.15	4142	29	17	-6	17	4	multi-exon	FALSE	canonical	3	77	junction_28	71.4613049995933	467	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTTTTTTTTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	7814111	7796354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813813
5611	chr11	-	3525	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	5	17	0	0	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	87	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714834	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
5613	chr18	-	2333	15	ISM	ENSMUSG00000024613.17	ENSMUST00000163446.9	4064	23	26	12723	-4	-653	5prime_fragment	FALSE	canonical	2	697	junction_1	165.801885713409	4	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGGAGGACTCAGAGAGCA	NA	False	NA	NA	False	NA	NA	NA	60982005	60961791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
5614	chr10	-	4213	6	NIC	ENSMUSG00000075232.7	novel	1442	7	NA	NA	0	-9	intron_retention	FALSE	canonical	3	315	junction_2	56.6836837193914	8	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATTGAGAAAGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	40178182	40163462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_40165466_40166113_40166612_40167989_40168033_40169159_40170304_40170712_40170800_40177744
5615	chr13	+	4286	24	NNC	ENSMUSG00000017756.10	novel	5142	24	NA	NA	5	-782	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	159.559400438931	2	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACACCCTCAGCCTCAGC	NA	False	NA	NA	False	NA	NA	NA	73911846	73964079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936831_73938059_73938115_73938768_73938886_73940685_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
5616	chr17	-	3290	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	-22	-107	-22	107	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	809	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGGCACTCCACCCTT	NA	False	NA	NA	False	NA	NA	NA	36280675	36267603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
5617	chr6	-	2864	12	NIC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	615	junction_1	1927.31213939119	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51438899_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
5618	chr2	+	3092	7	Fusion	ENSMUSG00000065272.3_ENSMUSG00000027405.17	novel	868	7	NA	NA	-3	9	intron_retention	FALSE	canonical	3	48	junction_6	913.898015827441	1	48	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAACACAAAACCAGAT	NA	False	NA	NA	False	NA	NA	NA	130116346	130121209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118574_130118951
5619	chr18	+	3469	12	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	49	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	799.984028766195	48	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGAGGCTGGTTGTCTCT	542	False	NA	NA	False	NA	NA	NA	61688458	61723134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496_61721662_61722283
5620	chr12	+	2231	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2004.41104924139	9	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762522_24762765_24762859_24762974_24763078
5621	chr2	+	3461	20	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	450.614815459232	1	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7232	False	NA	NA	False	NA	NA	NA	29779835	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802589_29802653_29804242_29804315_29804421_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810884_29811102_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
5626	chr6	-	2993	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-8	-24	intron_retention	FALSE	non_canonical	0	0	junction_1	279.574416151884	121	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9164	False	NA	NA	False	NA	NA	NA	88495818	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88481062_88481147_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
5627	chr8	+	3214	15	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	536.117814686744	100	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8815	False	NA	NA	False	NA	NA	NA	120637540	120684296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677194_120678659_120678699_120678766_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
5628	chr11	-	3502	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1169.78376444348	1	109	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCCATTCTCTTCATTT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676110_106676218_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
5630	chr1	+	2977	11	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	385.012220585269	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406697	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416849_93416877_93418878_93419045_93426826_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
5631	chr2	+	3912	17	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	0	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	102.226292331034	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTACATGTTTTGTCTT	3593	False	NA	NA	False	NA	NA	NA	126549279	126601227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567328_126575876_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
5633	chr6	+	3289	25	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	9	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	145.883366417225	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTACTGTCGTGGTGGAG	13	True	NA	NA	False	NA	NA	NA	28480366	28888820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233_28888458_28888619
5634	SIRV7	-	2431	6	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1828.91786584308	73	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147918	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2427_2493_2676_2993_3112_3809_3897_114680_114989_147608
5635	chr6	+	3675	10	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	162	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCCGAAGCCCAGCCTA	8855	False	NA	NA	False	NA	NA	NA	122704828	122719478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708555_122709328_122709430_122709730_122709851_122712395_122712569_122713536_122713701_122714016_122714257_122716788_122716953_122717346_122717435_122719327
5636	chr11	+	3933	21	FSM	ENSMUSG00000009090.18	ENSMUST00000009234.16	4085	21	87	65	-1	-3	multi-exon	FALSE	canonical	3	239	junction_7	27.5174490096738	352	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAGTTCCTGGCCAGTGT	NA	False	NA	NA	False	NA	NA	NA	4936910	4992726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
5638	chr14	+	3390	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	68	607	-5	1	multi-exon	FALSE	canonical	3	533	junction_6	51.0289194210886	62	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTTGTGTTTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	31881889	31901205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
5639	chr8	-	1474	8	Antisense	novelGene_ENSMUSG00000031960.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTCCGCCGGGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	111782203	111776345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
5641	chrX	+	3664	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	416.251318031924	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACTATGACTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	95139701	95212153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209536_95209756_95210075_95211289_95211401
5642	chr11	-	3512	1	Antisense	novelGene_ENSMUSG00000064780.3_AS_novelGene_ENSMUSG00000020372.16_AS_novelGene_ENSMUSG00000064500.4_AS_novelGene_ENSMUSG00000064725.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCGGCCTCCGCCGGA	NA	False	NA	NA	False	NA	NA	NA	48694698	48691186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691200_48694700
5643	chr6	-	2926	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	3	-24	intron_retention	FALSE	canonical	0	0	junction_1	279.574416151884	11	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9175	False	NA	NA	False	NA	NA	NA	88495807	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88481640_88481781_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
5644	chr17	-	5587	41	FSM	ENSMUSG00000002496.11	ENSMUST00000226284.2	6266	41	7	672	7	1	multi-exon	TRUE	canonical	3	45	junction_15	53.8189964139058	212	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGCAGTCAGACAGCTTC	NA	False	NA	NA	False	NA	NA	NA	24851594	24815461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823967_24825197_24825327_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
5645	chr8	+	3961	17	Intergenic	novelGene_1675	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	121	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGCAAAGATGGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	80410320	80438261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_80411899_80412562_80412686_80414069_80414193_80414292_80414432_80414519_80414634_80415752_80415814_80415933_80415993_80416860_80417082_80420048_80420175_80425975_80426066_80427214_80427312_80427541_80427614_80427745_80428511_80429628_80429733_80433864_80433948_80435050_80435191_80438195
5646	chr1	+	3918	8	Antisense	novelGene_ENSMUSG00000022995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACCAGTGGATGGCAGT	NA	False	NA	NA	False	NA	NA	NA	181730132	181747068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_181733463_181733951_181734015_181735865_181735944_181740873_181740939_181744763_181744812_181745821_181745880_181746001_181746144_181746934
5647	chr4	+	7429	4	FSM	ENSMUSG00000001089.15	ENSMUST00000105849.9	7438	4	3	6	3	-2	multi-exon	FALSE	canonical	3	86	junction_2	34.7658836600865	195	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCTCCTTTGAGTCAGT	4160	False	NA	NA	False	NA	NA	NA	136197074	136276624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_136197162_136248651_136248755_136267666_136270830_136272548
5648	chr8	-	5115	5	FSM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	19	22	16	-20	multi-exon	FALSE	canonical	3	209	junction_2	122.541829593001	47	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATAAAGAAAATGCACTG	NA	False	NA	NA	False	NA	NA	NA	11685738	11661604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
5649	chr2	-	2971	27	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.192307692307692	1	40	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCACCAGCACTTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	146916840	146854964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855115_146866425_146866556_146866634_146866746_146867113_146867225_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871324_146871404_146871895_146876747_146876817_146878578_146878714_146880086_146880206_146882733_146882870_146883905_146884015_146884092_146884182_146884777_146884851_146889552_146889639_146891211_146891308_146891900_146891983_146893632_146893686_146903164_146903236_146903323_146903456_146905150_146905281_146910711_146910774_146916802
5650	chr13	-	2556	13	ISM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	6904	0	-3620	0	3prime_fragment	FALSE	canonical	3	1480	junction_7	184.792902100342	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	2472	False	NA	NA	False	NA	NA	NA	74491495	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455
5651	chr11	+	2603	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3955	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	481	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55390340_55390435
5652	chr7	-	3398	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	2	28	junction_4	276.721767106479	4	9	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGGCTGTGTGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	44198250	44182174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183338_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
5653	chr10	-	4315	20	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	191	-8	intron_retention	FALSE	canonical	0	0	junction_1	118.0914946473	276	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATACTGCTTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	61219118	61155442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61156821_61156868_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184379_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
5654	chr5	-	2607	14	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	0	intron_retention	FALSE	canonical	2	77	junction_8	570.672768129007	516	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-123	True	NA	NA	NA	138170114	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166689_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
5655	chr10	-	2478	16	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	914.179228719523	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATACTCAGTGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	86541326	86526709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528110_86529805_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
5656	chr10	-	2612	19	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	120	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1122.53086514798	3	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTCAGTGCTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	86541253	86526707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527494_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537725_86537811_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
5657	chr11	-	3561	4	FSM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	-31	17	-31	0	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	119	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714870	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
5659	chr6	+	3457	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	11	14	0	-14	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	1108	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTACTGTCGTGGTG	4	True	NA	NA	False	NA	NA	NA	28480357	28888817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
5660	chrX	+	4305	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	113	-1	19	1	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	5	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGATGTCTATACTTT	NA	False	NA	NA	False	NA	NA	NA	20230832	20267093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
5661	chr14	+	5592	10	FSM	ENSMUSG00000021962.10	ENSMUST00000022535.9	5576	10	-16	0	-16	0	multi-exon	FALSE	canonical	3	125	junction_5	16.6332999331662	190	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATTGTGTTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	30201552	30249020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30234940_30235055_30240875_30241635_30243546_30243613_30244684_30244904_30245182
5663	chr11	-	5017	7	FSM	ENSMUSG00000020413.12	ENSMUST00000152890.8	2792	7	-12	-2213	-12	-6	multi-exon	FALSE	canonical	3	104	junction_5	37.7079419869195	33	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTTGGAATTCATTT	NA	False	NA	NA	False	NA	NA	NA	8961140	8943142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496
5664	chr3	-	5496	22	NIC	ENSMUSG00000033222.17	novel	4541	23	NA	NA	4	-16	intron_retention	FALSE	canonical	3	226	junction_13	22.5886010624648	3	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTTCGGCCGTGCACAGA	NA	False	NA	NA	False	NA	NA	NA	100876975	100846191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_100847429_100849142_100849218_100850972_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
5666	chr14	+	3624	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	12	-33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	116.577760705528	1	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCGCAGAGGAATAAAGACA	NA	False	NA	NA	False	NA	NA	NA	32043987	32070075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061913_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
5667	chr1	+	3851	21	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	29	-1793	intron_retention	FALSE	canonical	0	0	junction_16	114.825127911969	6	85	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGGTGGAGAGTGTC	9399	False	NA	NA	False	NA	NA	NA	87603989	87645623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637590_87637633_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411
5668	chr7	-	3203	26	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	217.630049395758	4	40	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28038180	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28018214_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029085_28029998_28030071_28030794_28030955_28037776_28037861_28038119
5669	chr4	-	3624	19	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	474.423652940213	1	89	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGAACATTGCCACTCA	NA	False	NA	NA	False	NA	NA	NA	135080450	135047804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069795_135071174_135071291_135071809_135071981_135073685_135073757_135074045_135074165_135074425_135074516_135080407
5670	chr4	+	4281	7	NIC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-26	0	intron_retention	FALSE	canonical	3	1814	junction_2	389.171663065714	16	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	-4	True	NA	NA	False	NA	NA	NA	40722532	40733900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40728184_40730172_40730288_40731683_40732177_40732727
5674	chr1	-	3310	8	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-964	20	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	145.124436401374	4	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTTTTAAAGCTGGTTC	NA	False	NA	NA	False	NA	NA	NA	13198351	13183660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197571
5675	chr5	+	3957	24	FSM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	-54	-5	-54	2	multi-exon	TRUE	canonical	0	0	junction_12	100.480471444838	355	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCATTGTTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	92285742	92350659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
5676	chr17	-	2343	10	NNC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	-8	183846	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	56.4545047902389	183	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAAAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	26309282	26116335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26116479_26300179_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
5677	chr3	+	4422	22	FSM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	13	13	13	-13	multi-exon	FALSE	canonical	3	253	junction_5	44.0686436309756	441	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCAAGTGCACTCTGCC	NA	False	NA	NA	False	NA	NA	NA	88243579	88269632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
5678	chr13	-	2384	14	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2661.49420594598	13	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	4758	False	NA	NA	False	NA	NA	NA	58550323	58538955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540023_58541523_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
5679	chr5	+	2259	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-145	-15	intron_retention	FALSE	canonical	3	16	junction_2	1380.81618375993	44	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTGTGTATAACAATATAT	611	False	NA	NA	False	NA	NA	NA	77099478	77115337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77102287_77102405_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
5680	chrX	+	3462	11	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	355.48599128517	2	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139662	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207079_95209617_95209756_95210075
5681	chr11	+	5796	19	NNC	ENSMUSG00000038290.16	novel	5848	19	NA	NA	24	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	35.0278548769968	53	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTGACCTCTGCTGGT	NA	False	NA	NA	False	NA	NA	NA	74816672	75055269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74816830_74819818_74821575_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050191_75050650_75050733_75053645
5682	chr4	-	3944	7	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	155.931608940159	53	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTAGAATCCTAATGAAG	NA	False	NA	NA	False	NA	NA	NA	126954921	126941390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126944352_126944530_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
5683	chr18	+	3417	11	NIC	ENSMUSG00000024423.7	novel	591	6	NA	NA	74	0	combination_of_known_junctions	FALSE	canonical	2	27	junction_1	239.691051147096	2	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13107428	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_13107533_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
5684	chr11	-	3456	2	Intergenic	novelGene_2219	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATCAGAGTAACTGTCT	NA	False	NA	NA	False	NA	NA	NA	9926070	9920891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_9920963_9922685
5685	chr7	-	6143	6	NIC	ENSMUSG00000030741.16	novel	3251	10	NA	NA	-8	-3	intron_retention	FALSE	canonical	3	390	junction_4	43.0655314607866	8	101	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCTGACTGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	125976601	125969241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125971320_125971583_125975912_125976008
5686	chr3	+	4073	19	NNC	ENSMUSG00000068823.11	novel	3827	19	NA	NA	46	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	4738.9715128918	1	139	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTAGCACCTAGCGCTTTC	NA	False	NA	NA	False	NA	NA	NA	102928025	102965497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102928123_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
5687	chr14	+	3748	3	ISM	ENSMUSG00000025290.18	ENSMUST00000223931.2	461	4	3628	-2364	-14	-1	3prime_fragment	FALSE	canonical	3	12376	junction_1	405.5	540	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTCTGCTCTGCTGCTTA	NA	False	NA	NA	False	NA	NA	NA	24540820	24545925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_24541884_24541974_24542185_24543450
5688	chr2	+	1500	2	FSM	ENSMUSG00000076441.10	ENSMUST00000130195.2	462	2	-899	-139	-899	-2	multi-exon	FALSE	canonical	3	3437	junction_1	0	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTCTCTGCGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	31407602	31410682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31408804_31410383
5689	chr18	-	2976	24	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	530.483358431515	14	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTTGGGCCATGTTATT	NA	False	NA	NA	False	NA	NA	NA	42395194	42335415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42366857_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
5690	chrX	-	2503	20	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.11648439134718	14	26	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGCTCGGAAGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	20548943	20524659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20524765_20534686_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538772_20545964_20546020_20547019_20547114_20547347_20547441_20547565_20547751_20548138_20548242_20548345_20548449_20548616
5691	chr11	+	5842	4	FSM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	-16	-668	-16	668	multi-exon	FALSE	canonical	3	165	junction_1	19.0146142626022	238	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTAGCCTGCCCTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	77576964	77604235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_77577334_77582367_77584081_77596334_77596368_77600508
5692	chr6	+	4029	11	NNC	ENSMUSG00000013736.17	novel	2283	9	NA	NA	8752	17602	intron_retention	FALSE	non_canonical	0	0	junction_1	0	575	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGGAAAGGGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	106755219	106777037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_106758069_106758660_106758796_106759423_106759489_106759871_106759988_106760385_106760474_106761379_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772962_106776954
5693	chr5	+	3728	13	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	8	-5	intron_retention	FALSE	canonical	3	120	junction_1	52.5071423713003	68	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9207	False	NA	NA	False	NA	NA	NA	110987873	111022006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111015960_111019892_111019974_111021345
5695	chr7	+	3151	6	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	301.065707113912	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	NA	False	NA	NA	NA	43896210	43901741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
5696	chr3	+	4239	9	ISM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	-18	-7	-6	7	intron_retention	FALSE	canonical	3	697	junction_8	76.4925445713502	13	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTGAATGTTCTAAACT	NA	False	NA	NA	False	NA	NA	NA	157240006	157254020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600
5697	chr2	+	2995	15	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	5	-1413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	60.2999729244871	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTTTATACAACCCTCA	NA	False	NA	NA	False	NA	NA	NA	152068800	152122359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152075809_152075958_152076831_152076928_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
5698	chr3	+	3771	25	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	169.380360718775	1	57	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCAGTCGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	54600278	54636176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600390_54600523_54600630_54602543_54602629_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624058_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
5699	chr18	+	6118	10	NIC	ENSMUSG00000042439.14	novel	5175	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	23.9294229757138	105	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATAGTCAAACTTTTGT	NA	False	NA	NA	False	NA	NA	NA	65715377	65822514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_65715470_65715967_65716078_65756054_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
5700	chr8	+	1352	10	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	3101	-2098	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1009.87759923275	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111763648	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771642_111782113
5701	chr4	+	2832	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10	novel	2813	7	NA	NA	7	2580	multi-exon	TRUE	non_canonical	0	0	junction_2	128.235074667581	18	72	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTGCTTTGGTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	147216501	147600523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147219028_147219122_147541451_147541542_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147598031_147599369_147599462_147599663
5702	chr17	+	2247	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	12	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1040.59319541649	225	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCTCCCAAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	13135347	13143949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139758_13141108_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
5703	chr18	-	2554	15	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	13	-229	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1639.75854525436	10	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCTTGATCTCCTTTGT	212	False	NA	NA	False	NA	NA	NA	35087397	35070695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071428_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
5704	chr10	+	4327	21	NIC	ENSMUSG00000019978.17	novel	4385	20	NA	NA	58	0	intron_retention	FALSE	canonical	3	14	junction_14	130.463203624624	5	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	25235811	25399417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25369464_25369528_25371342_25371490_25377475_25377530_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
5705	chr12	+	3158	11	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	188.637774583989	16	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTTGCTTTTCTGATTG	NA	False	NA	NA	False	NA	NA	NA	102724234	102743962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736113_102737477_102737540_102741952
5707	chr7	+	4374	7	NIC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	-11	260	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	76.9518247563587	237	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGAAACAGTCATGGTGC	NA	False	NA	NA	False	NA	NA	NA	41248673	41278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_41248825_41252859_41252959_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
5708	chrX	+	2557	14	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	880.936141389999	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-35	True	NA	NA	NA	74139689	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74139734_74140439_74140508_74140840_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
5709	chr1	-	2325	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2048.43442600273	93	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCCTAGAGGTTACATT	NA	False	NA	NA	False	NA	NA	NA	86287096	86278204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278620_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
5710	chrX	-	3143	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3708	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	456.26643721448	4	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23185126	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085583_23085799_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23184851
5711	chr10	-	1226	8	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2117	3554	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTGGGCCCGGGAGCCG	2820	False	NA	-4	True	NA	NA	NA	126903152	126899594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_126899627_126900086_126900322_126900452_126900588_126900701_126900871_126901022_126901134_126901821_126901872_126901967_126902109_126902799
5712	chr11	-	3512	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	1166	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	40646138	40639378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
5713	chr15	+	2633	25	NNC	ENSMUSG00000022191.17	novel	4570	35	NA	NA	-3491	-48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	227.334276482648	2	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACTGCGGTTGTTGTCTT	332	False	NA	NA	False	NA	NA	NA	12833944	12935328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12834027_12842445_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881836_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915499_12935154
5714	chr13	-	3402	7	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18645	3072	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.6334083238646	70	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGAGTTGCCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	74739508	74724404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74725525_74725953_74727579_74728971_74729033_74729232_74729360_74730309_74730434_74731765_74731993_74739390
5715	chr8	-	2737	19	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-5	-185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.311849531882	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGAGCTTACCGGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438304	80410275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80410681_80411486_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
5716	chr11	-	3416	6	NNC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	40	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	284.664715059665	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAACCTTCCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	40646098	40639385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40641887_40642136_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
5717	chr2	+	5157	25	FSM	ENSMUSG00000027598.17	ENSMUST00000029126.15	5159	25	1	1	1	1	multi-exon	FALSE	canonical	3	134	junction_8	21.5151351765836	200	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTTGCCTTTTCGTCTGC	NA	False	NA	NA	False	NA	NA	NA	154975429	155068774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
5718	chrX	-	1110	1	ISM	ENSMUSG00000016534.16	ENSMUST00000144663.2	2633	2	1974	441	1974	-441	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTCCTGGAACGCA	NA	False	NA	NA	False	NA	NA	NA	37543317	37542207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_37542200_37543300
5719	chr2	+	2847	8	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	3	-1	intron_retention	FALSE	canonical	3	1115	junction_3	91.5485819504751	2769	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8572	False	NA	NA	False	NA	NA	NA	72306505	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315657_72316063
5720	chr17	-	3379	15	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	-9	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	269.869393959223	6	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGAACTGTGGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	29226850	29189860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29199342_29199497_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
5722	chr2	+	3098	2	ISM	ENSMUSG00000042133.17	ENSMUST00000143954.2	675	5	7196	-2588	7196	-1876	3prime_fragment	FALSE	canonical	3	444	junction_1	0	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTGATCTTTAAGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	69579208	69582480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_69579442_69579615
5723	chr15	-	3346	13	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	43	-370	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	215.015164193908	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTACATTTTGGAACATA	NA	False	NA	NA	False	NA	NA	NA	51855100	51826005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51827614_51830060_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
5724	chr5	-	3771	18	NIC	ENSMUSG00000042508.17	novel	3892	18	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_9	79.895866482371	12	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGATTTTGAGCCATGC	NA	False	NA	NA	False	NA	NA	NA	9211744	9168872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176644_9177956_9178109_9179147_9179377_9180367_9180653_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
5725	chr12	-	2715	11	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	10	0	intron_retention	TRUE	non_canonical	0	0	junction_9	592.004763494349	68	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860090	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854357_108854458_108854475_108859994
5726	chr6	-	2328	11	NIC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	150	-4	combination_of_known_junctions	FALSE	canonical	3	210	junction_10	1167.49801284627	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGATAAACTCTGGATTTG	NA	False	NA	NA	False	NA	NA	NA	144993237	144944887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144993165
5727	chr17	-	2917	10	NIC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	11	1	combination_of_known_junctions	FALSE	canonical	3	158	junction_3	120.807570689102	1193	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGACTTACTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	50600653	50586421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_50588340_50590155_50590255_50591265_50591380_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
5728	chr2	-	4678	27	NIC	ENSMUSG00000027185.16	novel	4107	28	NA	NA	-17	-2	intron_retention	FALSE	canonical	2	8	junction_14	71.2662002759734	2	132	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCATTTGCCTGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	103591566	103551606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565262_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
5730	chr14	+	3734	10	NNC	ENSMUSG00000040618.8	novel	1656	9	NA	NA	140	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	515.589630100012	22	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGGACTCCCCATGCTG	9232	False	NA	NA	False	NA	NA	NA	55778063	55786330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55779768_55779840_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
5731	chr18	-	2745	12	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	-612	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1859.48719492745	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTCCTTTGTGAATGGTG	5820	False	NA	NA	False	NA	NA	NA	35081789	35070687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079092_35079548_35079712_35080963_35081071_35081158
5732	chr3	+	2697	17	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-9	-350	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_13	307.253858549815	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4840	False	NA	NA	False	NA	NA	NA	34074237	34124121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116054_34116181_34118267_34118469_34122309_34122402_34123065
5733	chr3	-	3222	20	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	-16	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	401.692734103542	3	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAAAGCCTCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	104725574	104702155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704480_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712406_104725523
5734	chr8	+	4407	32	ISM	ENSMUSG00000004565.16	ENSMUST00000208002.2	4444	35	1426	3	-12	-2	3prime_fragment	FALSE	canonical	1	71	junction_27	44.5244031581209	347	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCTGGTGCTGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	3566850	3594264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
5735	chrX	+	2188	17	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-2942	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	760.832839311632	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACGTGAGTAACTTCCAC	NA	False	NA	NA	False	NA	NA	NA	20529169	20544497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536869_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437
5736	chr5	-	2327	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	570.745453288048	6	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGTTAATAACTCTGT	2286	False	NA	-123	True	NA	NA	NA	138170114	138162859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163187_138163367_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
5737	chr14	-	3819	21	NNC	ENSMUSG00000037572.18	novel	4260	25	NA	NA	5776	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_20	115.92708915521	3	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTGTCTTGCTATGGT	NA	False	NA	NA	False	NA	NA	NA	47508488	47478402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47507890_47508051_47508252
5738	chr3	+	4120	10	NNC	ENSMUSG00000027852.15	novel	1749	9	NA	NA	-25	-14	intron_retention	FALSE	non_canonical	0	0	junction_8	386.933560507374	2	102	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCTTTGCTTAACTG	NA	False	NA	NA	False	NA	NA	NA	102965638	102975208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967254_102967351_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102973359_102973582_102973809_102973970
5740	chr9	-	3732	21	NNC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_19	89.637310869972	8	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7638	False	NA	NA	False	NA	NA	NA	107749895	107650757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730740_107737547_107737659_107749847
5741	chr9	-	3788	19	FSM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	15	3	15	0	multi-exon	FALSE	canonical	3	264	junction_18	79.7176537599273	341	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGCTGTCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	109930140	109913390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
5742	chr1	-	1479	8	Antisense	novelGene_ENSMUSG00000034432.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCATCTTCCCGGCCGCT	NA	False	NA	NA	False	NA	NA	NA	90540827	90531278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_90531348_90532093_90532168_90533185_90533235_90534258_90534390_90537809_90537921_90538694_90538758_90539259_90539307_90539892
5743	chr16	-	1929	15	Antisense	novelGene_ENSMUSG00000006998.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.772618130456569	8	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACATGATTTCTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	20482164	20474412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20474452_20474628_20474691_20475290_20475439_20475616_20475723_20476229_20476359_20476722_20476810_20478153_20478318_20478427_20478526_20478701_20478850_20479089_20479173_20480311_20480488_20480569_20480658_20480839_20480970_20481371_20481489_20481810
5744	chr18	+	3124	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	11	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	425.561314147286	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGTCCATTAAGAACCAA	NA	False	NA	NA	False	NA	NA	NA	35251950	35387808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657_35387052_35387597
5745	chr1	+	3167	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	8	142	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	321.644461668816	53	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTTAGTTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	85992370	86067015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005134_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
5746	chr16	-	2799	14	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	12	110	intron_retention	FALSE	canonical	0	0	junction_10	1810.69054139198	17	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87292735	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290335_87290373_87290594_87290675_87291224_87291316_87292616
5747	chr9	+	3458	24	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	740	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGCATTTCAAACAGGCCA	NA	False	NA	NA	False	NA	NA	NA	61824558	61854066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826253_61826893_61826976_61827156_61827239_61828299_61828529_61831186_61831503_61831915_61832093_61832250_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61840510_61840551_61842659_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
5749	chr8	-	3168	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	285	21	-48	-21	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	2	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAAGTTGCTGTTAACA	NA	False	NA	NA	False	NA	NA	NA	86026146	85987041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
5750	chrX	+	2923	20	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	58	-732	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	228.544957905296	8	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAAAGGAGCCTAATCT	NA	False	NA	NA	False	NA	NA	NA	150799481	150844958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810720_150816709_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
5751	chr14	-	6477	28	FSM	ENSMUSG00000014496.9	ENSMUST00000014640.9	6712	28	234	1	-39	-1	multi-exon	FALSE	canonical	3	136	junction_10	15.4869740389594	264	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAAGTGTCTTTCTTTTTT	5514	False	NA	NA	False	NA	NA	NA	31552374	31420725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31424264_31427221_31427314_31428746_31428830_31429160_31429244_31429959_31430106_31430706_31430791_31430874_31430963_31432708_31432929_31433015_31433134_31433885_31433974_31437190_31437393_31441297_31441373_31442062_31442090_31443802_31443915_31449591_31449733_31451841_31451911_31453985_31454050_31455640_31455724_31456928_31457044_31458716_31458796_31465179_31465393_31467177_31467321_31468869_31468958_31470599_31470801_31477689_31477761_31486210_31486290_31500878_31500963_31552283
5752	chr5	-	3469	11	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	28	-2	intron_retention	FALSE	canonical	3	1644	junction_8	214.393656622578	2	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTGCTTGTTAATAACT	2351	False	NA	-58	True	NA	NA	NA	138170049	138162863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138167210_138167359_138167736_138167821_138167987_138168578_138168659_138169987
5754	chr16	-	5825	5	NIC	ENSMUSG00000022864.15	novel	6127	5	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	2	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAGCTATCTCCGAGCCT	3244	False	NA	NA	False	NA	NA	NA	78373544	78337234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
5755	chr14	+	4317	40	NIC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	-39	-9	combination_of_known_junctions	FALSE	canonical	3	70	junction_39	179.139509432116	1	78	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTATTCAACATGACTCA	NA	False	NA	NA	False	NA	NA	NA	47886811	47974005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971728_47973556
5756	chr15	+	4900	13	NIC	ENSMUSG00000022255.17	novel	6919	12	NA	NA	-1	-2104	combination_of_known_junctions	FALSE	canonical	3	44	junction_6	197.527406677881	342	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTTGTTTAAATTG	57	False	NA	NA	False	NA	NA	NA	34082869	34143666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34121568_34121659_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
5758	chr4	+	4849	15	NNC	ENSMUSG00000040455.18	novel	6003	18	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	9.16988193456587	64	32	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTTAGTTCCCTGGCT	12	True	NA	NA	False	NA	NA	NA	21776291	21837868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21824849_21834798
5759	chrUn_JH584304v1	-	4385	4	Intergenic	novelGene_4670	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_3	166.197339195174	2	72	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACTACCATAGCT	NA	False	NA	NA	False	NA	NA	NA	58959	52677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_57152_58563
5760	chrX	+	3855	5	NNC	ENSMUSG00000094004.8	novel	3677	5	NA	NA	96	7	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	65.5915390885135	277	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	NA	NA	NA	134274128	134284149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134274260_134274357_134274485_134278675_134278976_134280276_134280862_134281437
5761	chr18	+	3690	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-5	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	436.144995096132	2	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAATTTTCCCAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	35251906	35387794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377199_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
5762	chr8	+	3250	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-5819	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	527.617375258393	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	120658601	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120658657_120659028_120659145_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
5763	chr1	+	4287	22	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	0	-80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	96.7572411699552	7	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTCTTTGCTTGTGTTTT	8319	False	NA	NA	False	NA	NA	NA	191307873	191354778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191313870_191314006_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276_191353909_191353955
5764	chr4	-	3030	16	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	690.875213045019	14	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	9799	False	NA	NA	False	NA	NA	NA	43000449	42979962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980558_42982526_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
5766	chr9	+	4480	10	NNC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	3370	-289	intron_retention	FALSE	canonical	0	0	junction_9	604.616703395375	2	120	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCTCTGCTCCACAGCAT	NA	False	NA	NA	False	NA	NA	NA	54497164	54511656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565_54511030_54511080
5767	chr7	-	5782	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	30	1	-23	-1	multi-exon	FALSE	canonical	3	250	junction_1	30.5653398476117	712	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTGTGGCCATGCATTT	NA	False	NA	NA	False	NA	NA	NA	79570367	79525073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
5769	chr16	-	3150	8	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-9997	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	369.553287974903	4	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACGCATTCCTGCAACC	NA	False	NA	NA	False	NA	NA	NA	22230576	22200067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22200902_22200980_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
5770	chr5	-	2751	13	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-36	-8	intron_retention	FALSE	canonical	3	1920	junction_6	157.423063219254	315	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAACTCTGTAGAGTTT	2284	False	NA	-125	True	NA	NA	NA	138170116	138162852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167987_138168578_138168659_138169987
5771	chr4	+	2873	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	19	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	190.299927015809	133	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGCCATTAGGAACTGTG	NA	False	NA	NA	False	NA	NA	NA	124923803	124949162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946659_124946724_124947328_124947934_124948021_124948976
5775	chr16	-	4222	15	ISM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	78	-1	72	1	3prime_fragment	FALSE	canonical	3	303	junction_6	229.261191389976	1054	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAACTGTATCATTGTAC	8188	False	NA	NA	False	NA	NA	NA	4867649	4831771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613
5776	chr1	-	3320	15	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	582.763595434088	50	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	181669908	181642899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181643305_181643458_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
5777	chr10	+	2673	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	717	junction_1	92.7194154425059	259	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21870581	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
5778	chr4	+	3566	16	NIC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	1	-7	intron_retention	FALSE	canonical	3	458	junction_7	61.5309858707158	5	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAAAGAACTGGTATGGT	5273	False	NA	NA	False	NA	NA	NA	108436651	108472023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108463555_108469247_108469418_108470265_108470354_108471477
5780	chr2	+	3431	28	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	58	0	intron_retention	FALSE	non_canonical	0	0	junction_13	293.518249795414	3	84	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146854973	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878585_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905268_146916749_146916947_146919402
5781	chrX	-	4056	29	FSM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	0	13	0	-9	multi-exon	FALSE	canonical	3	285	junction_28	46.7627942767691	434	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAAACCTGAAGAAAGTG	NA	False	NA	NA	False	NA	NA	NA	7814128	7796371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
5782	chr16	+	5319	32	NIC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_2	344.240701791684	2	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	NA	False	NA	NA	NA	20491538	20511633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20491627_20492348_20492406_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
5783	chr7	+	7056	4	NNC	ENSMUSG00000049739.11	novel	6310	3	NA	NA	-38	-21	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	55.0474542755814	5	37	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAACTTTTTTTTTCA	145	False	NA	NA	False	NA	NA	NA	127475354	127485143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127476385_127477131_127477280_127477741_127483091_127484614
5785	chr17	-	3111	16	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	0	-1041	intron_retention	FALSE	canonical	3	665	junction_15	78.5571554135374	1105	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCCCAATATTACTGTGC	8737	False	NA	NA	False	NA	NA	NA	24470321	24442212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24443321_24443881_24444052_24445448_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
5787	chr15	-	3857	16	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	32	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	409.21779042461	1	108	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96953805	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907889_96908041_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
5788	chr16	-	2727	20	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	448.791519811647	12	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	91443843	91418282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422281_91426982_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
5789	chr14	-	3967	20	FSM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	18	9238	18	-303	multi-exon	FALSE	canonical	3	151	junction_14	26.2237337258888	329	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTGTTTATATCTTTT	NA	False	NA	NA	False	NA	NA	NA	79628200	79571946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
5791	chrX	-	4227	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	26	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800276	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766798_149767397_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
5792	chr1	-	2155	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1962.11613903346	12	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTAATACTTCCTAGAGG	NA	False	NA	NA	False	NA	NA	NA	86287096	86278211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280028_86280959_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
5793	chr1	-	2298	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1992.83916018512	20	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287130	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86284945_86285079_86285175_86285828_86285946_86286927
5794	chr18	+	2998	21	NIC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-18	36	intron_retention	FALSE	canonical	1	1	junction_3	169.26594459607	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTGTGTCTGGTGC	9032	False	NA	NA	False	NA	NA	NA	32970345	32999509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_32970612_32972484_32972513_32974095_32974197_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
5795	chr10	+	4312	12	Antisense	novelGene_ENSMUSG00000036112.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	59	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTCGATGGTCCGGACGC	3283	False	NA	NA	False	NA	NA	NA	93694378	93725656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_93695182_93695245_93697464_93698237_93698354_93698790_93698898_93701270_93701366_93704728_93704822_93705976_93706164_93707352_93707511_93715400_93715507_93715936_93716001_93722855_93722966_93725401
5796	chr14	+	3827	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	57	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	390.154545789229	1	130	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCTGTGTAGAACTTCA	1897	False	NA	NA	False	NA	NA	NA	121148701	121184828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157356_121157532_121159557_121159641_121160455_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
5797	chr15	-	2782	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-136	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	2	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCATGAGTCTCAGTGG	622	False	NA	NA	False	NA	NA	NA	36793899	36771016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772135_36772223_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
5798	chrX	+	4495	15	NIC	ENSMUSG00000031256.12	novel	4502	14	NA	NA	-44	3	combination_of_known_junctions	FALSE	canonical	3	23	junction_9	232.87177868115	619	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTACTTAGAAATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	132960015	132987571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973163_132973224_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
5799	chr4	+	2676	12	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	-10	multi-exon	FALSE	non_canonical	0	0	junction_1	17.3614943942999	1	74	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTTCAACAAGTTTGC	924	False	NA	NA	False	NA	NA	NA	145237358	145351901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237498_145239552_145239640_145241457_145241589_145243726_145243823_145269924_145269992_145299973_145300051_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107_145351407_145351509
5800	chr1	-	2235	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-9	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2068.03757419541	23	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCCTAGAGGTTACATT	NA	False	NA	NA	False	NA	NA	NA	86287095	86278204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284456_86284846_86285175_86285828_86285946_86286927
5801	chr14	+	3730	37	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-29	44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	221.951493074	1	55	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAATTAAAGCTGACGA	NA	False	NA	NA	False	NA	NA	NA	47886821	47962385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887417_47887521_47887855_47888029_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334
5802	chr10	-	3078	28	FSM	ENSMUSG00000052798.14	ENSMUST00000064848.7	3114	28	36	0	-5	0	multi-exon	FALSE	canonical	3	716	junction_19	68.4831139760951	1091	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	NA	False	NA	NA	NA	117628574	117586525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
5803	chr1	+	3203	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	-5	147	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_13	321.698573547074	171	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTAGTTGATTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	85992357	86067020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017754_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
5804	chr19	-	4957	21	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	-160	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	549.085828901093	1	214	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTCAATGGTGCTATA	5894	False	NA	NA	False	NA	NA	NA	60770788	60749547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60750743_60751502_60751703_60752465_60752672_60754771_60755434_60756008_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761482_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764273_60765046_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605
5805	chr16	-	3166	11	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	19	110	intron_retention	FALSE	canonical	3	4287	junction_5	243.567670268449	18	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87292728	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
5807	chr17	-	3165	7	NIC	ENSMUSG00000024026.14	novel	2024	7	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	9	junction_4	1610.79798202285	7	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAAGGTCTGGGCAGCA	NA	False	NA	NA	False	NA	NA	NA	30831555	30811841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_30813201_30815347_30816617_30816778_30816847_30819012_30819154_30822360_30822492_30822993_30823077_30831441
5810	chr13	+	2288	10	ISM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	40	2057	20	-6	intron_retention	FALSE	canonical	3	1666	junction_3	148.996478539877	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCACTCTTGGTATTGA	NA	False	NA	NA	False	NA	NA	NA	3588102	3615814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858
5811	chr8	-	3111	16	ISM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	4860	0	4521	0	3prime_fragment	FALSE	canonical	3	1260	junction_3	107.371752958277	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86021571	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487
5813	chr9	+	3286	11	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	19	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	104.650848061542	12	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTATGTTGCTTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	109760886	109913018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893512_109912108
5814	chr6	+	2862	12	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCTGCACAGTACAGAAA	1078	False	NA	NA	False	NA	NA	NA	122295257	122310395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298827_122299043_122299283_122299431_122299965_122300777_122302420_122302822_122302878_122302908_122309478_122309637_122310249
5815	chr1	-	4667	30	Antisense	novelGene_ENSMUSG00000026615.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.506790981265485	1	185	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGTGCGCGCGACCGAAG	NA	False	NA	NA	False	NA	NA	NA	185160444	185095320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_185095440_185099726_185099813_185101773_185101872_185103083_185103243_185105112_185105247_185106318_185106413_185110975_185111097_185111736_185111933_185113994_185114169_185117073_185117307_185118441_185118523_185119244_185119314_185126557_185126667_185128222_185128364_185129256_185129469_185130592_185130702_185131416_185131532_185133501_185133861_185139153_185139387_185139682_185139948_185142378_185142427_185143348_185143560_185143895_185143977_185145356_185145431_185145644_185145746_185146524_185146681_185147948_185148144_185150403_185150579_185152321_185152491_185160094
5816	chr13	+	4423	23	NIC	ENSMUSG00000017756.10	novel	5142	24	NA	NA	-4	-818	intron_retention	FALSE	canonical	3	635	junction_9	57.5489730361947	3	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCACCCTCCTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	73911811	73964043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936831_73938059_73938115_73938768_73938900_73940668_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
5817	chr4	-	4687	9	Intergenic	novelGene_2129	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	39	220	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGGAACTTCCCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	147671110	147216491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147216782_147233242_147233277_147316804_147316901_147447266_147447360_147536168_147536305_147595207_147595348_147596815_147597063_147598405_147599052_147668105
5818	chr13	-	3607	10	NNC	ENSMUSG00000021556.13	novel	3689	11	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	157.100816887331	1	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	59823570	59782809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793115_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
5819	chr2	-	3217	17	NNC	ENSMUSG00000027184.15	novel	760	9	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	457.53522746888	3	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	NA	False	NA	NA	False	NA	NA	NA	103627274	103597451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103598741_103599203_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
5820	chrX	+	3443	9	FSM	ENSMUSG00000015291.11	ENSMUST00000146013.8	3696	9	244	9	0	-7	multi-exon	FALSE	canonical	3	736	junction_5	44.1572120383522	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAACTTAAGCCTGGCTC	6206	False	NA	NA	False	NA	NA	NA	73348861	73355457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73353741_73353995_73354141_73354243_73354299_73354392
5823	chr2	-	5002	24	Intergenic	novelGene_2745	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	80	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAGATAATGAGATATTA	5822	False	NA	NA	False	NA	NA	NA	155068657	155005307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_155005403_155010602_155010746_155014376_155014502_155015853_155015994_155020099_155020208_155020961_155021006_155022471_155022630_155024075_155024273_155025653_155025750_155027348_155027524_155031355_155031426_155034044_155034130_155041253_155041384_155044126_155044197_155045197_155045271_155048210_155048300_155050976_155051138_155051905_155052039_155052357_155052498_155054253_155054376_155054915_155055021_155059908_155060007_155062126_155062200_155066285
5828	chr12	+	3250	2	Genic_Genomic	ENSMUSG00000021908.11	novel	1878	1	NA	NA	-15	1419	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119224697	119228009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_119226316_119226377
5829	chr4	+	4865	9	NIC	ENSMUSG00000028248.16	novel	2438	10	NA	NA	0	-4	intron_retention	FALSE	canonical	3	402	junction_3	32.8785644455472	148	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCTTGCACCTTAATT	-11	True	NA	NA	False	NA	NA	NA	21848047	21875252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21871609_21873585
5830	chrX	+	2926	22	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	64	-483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	995.154610305704	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCAGATGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	20529200	20548935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538541_20538683_20538755_20539054_20539211_20541824_20541991_20542117_20542300_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
5831	chr11	-	3881	9	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	1	intron_retention	FALSE	canonical	3	190	junction_4	93.9730679503442	76	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACATTGCCGATATTTCT	974	False	NA	NA	False	NA	NA	NA	79145498	79130212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
5832	chr4	+	2900	7	ISM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	12386	441	12345	-441	3prime_fragment	FALSE	canonical	3	192	junction_6	104.722914822349	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTACTGTGAGCATCTTT	NA	False	NA	NA	False	NA	NA	NA	21740111	21750105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
5833	chr8	+	4031	12	FSM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	-44	2	-44	-2	multi-exon	FALSE	canonical	3	57	junction_2	21.8858798209528	323	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCCAGTCTTAGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	75720262	75758604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
5834	chrX	-	3282	9	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3362	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	366.28779668452	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	NA	False	NA	NA	NA	23227930	23085524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
5835	chr4	+	2643	10	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	37	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	38.3495939747045	145	89	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576910	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578922_147591776_147591848_147591992_147592098_147596801_147597327_147597411_147597608_147597943_147598223_147598473_147598683_147599353_147599763_147599862
5836	chr16	-	4023	10	FSM	ENSMUSG00000003166.21	ENSMUST00000012152.13	4045	10	22	0	-11	0	multi-exon	FALSE	non_canonical	0	0	junction_7	135.772503989233	501	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	17709535	17658218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
5837	chr1	+	1115	1	Antisense	novelGene_ENSMUSG00000026034.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGAGGCAGGCGGATTT	5981	False	NA	NA	False	NA	NA	NA	58455510	58456625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_58455500_58456600
5838	chr2	+	2894	19	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	0	-1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	190.029529868971	7	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTATCTCACTGACAAGA	7222	False	NA	NA	False	NA	NA	NA	23046529	23087655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082465_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
5839	chr11	+	3214	13	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	182	intron_retention	FALSE	canonical	3	4673	junction_2	340.698170020849	5	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940638	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
5840	chr6	-	2108	13	ISM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	99	2558	-4	2390	5prime_fragment	FALSE	canonical	1	1040	junction_5	609.577466365022	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAGGGTTGACTAATGGT	NA	False	NA	NA	False	NA	NA	NA	88875663	88863013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
5841	chr15	-	2939	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	972.418891219211	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACAGTGAGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	38300954	38294660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38295190_38295294_38296409_38296858_38297772_38297865_38298097_38300802
5842	chr2	+	4442	19	NIC	ENSMUSG00000026743.17	novel	4917	23	NA	NA	6296	-2	combination_of_known_splicesites	FALSE	canonical	1	9	junction_1	62.300174384949	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATAGCTCTGTGCCCTGC	2006	False	NA	NA	False	NA	NA	NA	18075947	18217195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18076016_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
5843	chrX	+	3817	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	58	-820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	179.361594543599	1	112	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTACCCCCTATCATGGAT	NA	False	NA	NA	False	NA	NA	NA	150799481	150844870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812392_150816687_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
5844	chr1	+	3567	22	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	19	-252	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	613.546358302979	1	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3166	False	NA	NA	False	NA	NA	NA	180396512	180428565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418789_180418923_180421560_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
5845	chr7	-	3284	22	NNC	ENSMUSG00000030754.10	novel	3346	22	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_19	106.438446329993	47	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGTATCTGTGGGATTT	NA	False	NA	NA	False	NA	NA	NA	113853949	113814795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848150_113849280_113849511_113853104_113853255_113853840
5846	chr18	-	2741	13	NIC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	8	-4	intron_retention	FALSE	canonical	3	8	junction_3	1475.59403057059	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACCAAAACACTTTG	NA	False	NA	NA	False	NA	NA	NA	64649561	64632732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634947_64636578_64636693_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
5848	chr17	-	3139	21	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-852	3	intron_retention	FALSE	canonical	3	801	junction_11	62.1006441190428	148	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTGTGGGGTGCTTCC	NA	False	NA	-30	True	NA	NA	NA	36276016	36267707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36268482_36268570_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968
5849	chr6	+	6372	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	104	4919	3	3924	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	877	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATACAATGTGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	31375773	31488827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
5850	chr10	-	2927	21	NIC	ENSMUSG00000040354.15	novel	2962	22	NA	NA	51	-4	intron_retention	FALSE	canonical	3	371	junction_2	335.998199399937	267	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCCGAGCCCTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	127147496	127132098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127132310_127132409_127132503_127132585_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
5852	chr3	+	3649	23	NNC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	94.1343004909774	10	31	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAGTCCTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	63202976	63289045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276266_63276378_63287653
5853	chr2	+	3206	28	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	51	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	385.905139128822	3	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCTGGTGTCTGATT	NA	False	NA	NA	False	NA	NA	NA	146854966	146919922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870116_146870171_146871257_146871333_146871414_146871549_146871755_146871897_146878583_146878716_146880088_146880203_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
5854	chr13	+	3322	17	Antisense	novelGene_ENSMUSG00000116207.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	245	3	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATCCGAACT	5667	False	NA	NA	False	NA	NA	NA	119472062	119546004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_119472941_119474909_119475028_119476362_119476479_119491191_119491279_119494040_119494198_119502861_119503042_119505010_119505170_119506444_119506681_119508930_119509128_119511164_119511257_119518206_119518400_119523114_119523204_119525729_119525818_119531146_119531363_119533280_119533512_119541086_119541291_119545923
5856	chr2	-	2176	3	Antisense	novelGene_ENSMUSG00000018326.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGCTGGAAGGAAGATGAA	NA	False	NA	NA	False	NA	NA	NA	163860508	163857154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_163857314_163858021_163858119_163858588
5857	chr5	-	3342	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	26	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	2	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGATGTCGGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	135963378	135937270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938619_135938713_135940506_135963176
5858	chr11	+	3349	28	FSM	ENSMUSG00000020464.16	ENSMUST00000020756.9	2707	28	-2	-640	-2	640	multi-exon	FALSE	canonical	0	0	junction_19	125.489275633577	949	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGATTTTTAAGGTATGT	NA	False	NA	NA	False	NA	NA	NA	29080745	29112468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
5859	chrX	-	3841	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-4630	1	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_27	110.182004311385	4	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTCTGGTGTTCGTGTA	NA	False	NA	NA	False	NA	NA	NA	59229079	59101317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59228955
5860	chr3	-	4055	9	NIC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	-1	39	intron_retention	FALSE	canonical	3	2549	junction_5	105.468004626996	51	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTCTCTGCTGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	108352526	108333888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108334298_108334575_108335648_108335921_108336052_108336556_108336779_108338780_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
5861	chr16	+	2655	20	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	966.535441151937	2	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470450	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473655_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479156_20480340_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
5862	chr17	-	2629	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	-9	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	831.921754467063	5237	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCGTTCGCCCAGTCCC	NA	False	NA	NA	False	NA	NA	NA	47093572	47084828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47086663_47088977_47089198_47089335_47089475_47090210_47090349_47091316_47091478_47092708_47092818_47093544
5864	chr1	+	2832	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	0	3	0	-3	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	1684	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTTTTTGCCGTCTTA	NA	False	NA	NA	False	NA	NA	NA	167177559	167196098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
5865	chr15	-	3309	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	-10	0	-10	0	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	1359	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033595	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
5866	chr3	+	3758	5	NNC	ENSMUSG00000028180.19	novel	2737	11	NA	NA	26	11	intron_retention	FALSE	non_canonical	0	0	junction_3	376.965764360638	11	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATGTTCTAAACTCATA	NA	False	NA	NA	False	NA	NA	NA	157240087	157254024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157240112_157241970_157242024_157242114_157242231_157249934_157251787_157252311
5867	chr8	-	3419	18	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-4	-177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	428.662424348628	2	69	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACCGGTGTGTGGTCATT	NA	False	NA	NA	False	NA	NA	NA	80438283	80410267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411907_80412573_80412662_80414150_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433939_80435047_80435182_80438171
5868	chr11	-	3265	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9035	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_4	499.161136307706	4	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	389	False	NA	NA	False	NA	NA	NA	106615255	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
5869	chr7	-	3368	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	28	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	285.412656718977	2	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTGGCTGTGTGTTGTGG	NA	False	NA	NA	False	NA	NA	NA	44198234	44182175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188239_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
5870	chrX	-	3990	20	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-20	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	29.7657521322744	1	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTACAGATTGCATCATC	NA	False	NA	NA	False	NA	NA	NA	47683288	47630508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549_47680639_47682390_47682476_47683240
5871	chr12	+	3233	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	28	0	28	0	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	628	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	NA	False	NA	NA	NA	102724253	102743966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
5872	chr2	+	3716	14	NNC	ENSMUSG00000027242.15	novel	4170	13	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	15.000197237362	529	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121337199	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374229_121374761
5873	chr8	+	4752	11	NIC	ENSMUSG00000001482.16	novel	3191	12	NA	NA	9	4	intron_retention	FALSE	canonical	3	18	junction_1	81.2785334513363	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGTTACTAGTCTGCCA	NA	False	NA	NA	False	NA	NA	NA	124170055	124190005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_124170185_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124185171_124186255_124186397_124186555_124186666_124188202
5874	chr6	+	2780	15	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-68	0	intron_retention	TRUE	canonical	0	0	junction_7	212.708109379775	215	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5369	False	NA	NA	False	NA	NA	NA	125108803	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118466_125120963
5875	chr12	+	4189	14	FSM	ENSMUSG00000017843.15	ENSMUST00000084985.11	1847	14	-84	-2258	36	0	multi-exon	FALSE	canonical	3	17	junction_13	338.054020402153	160	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGCTCTATGAAACTAAATT	4957	False	NA	NA	False	NA	NA	NA	110452208	110549496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110541178_110541296_110546834
5876	chr12	+	1401	13	FSM	ENSMUSG00000020571.14	ENSMUST00000057288.7	2175	13	0	774	0	-774	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTGTGAGCCACGGCCC	NA	False	NA	NA	False	NA	NA	NA	17316545	17333997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
5877	chr17	-	3123	12	NIC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	294.127930787645	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCGAACTGTGGTGGATT	NA	False	NA	NA	False	NA	NA	NA	29226925	29189861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29207151_29207236_29210271_29210395_29218982_29219116_29226684
5879	chr2	+	5160	25	FSM	ENSMUSG00000027598.17	ENSMUST00000029126.15	5159	25	-1	0	-1	0	multi-exon	FALSE	canonical	3	134	junction_8	21.5151351765836	191	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCCTTTTCGTCTGCT	NA	False	NA	NA	False	NA	NA	NA	154975427	155068775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
5880	chr2	-	4277	19	NIC	ENSMUSG00000039671.19	novel	5232	23	NA	NA	-31	-3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	185.467219492213	5	81	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGATGGCGTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	165726599	165626077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
5882	chr5	-	2325	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-40	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	567.665830306844	19	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCTGTAGAGTTTTTAG	2280	False	NA	NA	False	NA	NA	NA	138170120	138162848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167703_138167857_138167987_138168578_138168659_138169987
5883	chr3	+	3222	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	-6	-1089	1	112	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCGGAAGACTTAATTTTAT	4850	False	NA	NA	False	NA	NA	NA	34074247	34124583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
5884	chr11	+	4857	11	ISM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	59	0	11	0	intron_retention	FALSE	canonical	3	550	junction_4	58.4468989767635	798	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAAGATGCCTCTGCCAT	11	False	NA	NA	False	NA	NA	NA	98798685	98814762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498
5885	chr18	+	3080	19	FSM	ENSMUSG00000003779.17	ENSMUST00000166044.3	3107	19	27	0	27	0	multi-exon	FALSE	canonical	3	116	junction_1	232.455445087047	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6302	False	NA	NA	False	NA	NA	NA	34758112	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_34758317_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
5886	chr19	+	3411	21	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	4140	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	278.770241417552	2	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATAATTGGATGTCT	6057	False	NA	NA	False	NA	NA	NA	8879628	8894026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879885_8879995_8886046_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
5888	chr5	-	3033	17	NNC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	-36	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	346.081451530922	6	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTTGGCTTTGTCTCCG	NA	False	NA	NA	False	NA	NA	NA	149559710	149540308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550782_149552862_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
5889	chr18	+	3963	21	NIC	ENSMUSG00000024260.15	novel	400	3	NA	NA	-6	2	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	41.2439086411557	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGCAGTTTGCCTCTTT	7513	False	NA	NA	False	NA	NA	NA	31768131	31856116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_31768185_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
5890	chr9	-	3546	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	-88	4	-60	-2	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	67	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCACCTTGTGTTCCTG	8655	False	NA	NA	False	NA	NA	NA	31123171	31060856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
5891	chr11	-	3241	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	65	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	261.421985581654	4	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAACCTTGAGTCCATTT	NA	False	NA	NA	False	NA	NA	NA	88755347	88721623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736104_88736549_88736692_88755222
5892	chr2	+	3580	14	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	-15	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.7213155719746	499	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAATAATGTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	121340313	121375333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374143_121374761
5893	chr16	-	1508	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1819	-3	80	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACTTGCCATATTCAAT	NA	False	NA	NA	False	NA	NA	NA	22084679	22065117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
5894	chr18	-	1971	15	ISM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	5462	2526	1	2	3prime_fragment	FALSE	canonical	3	792	junction_3	62.3785759271072	6	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACTTGATTATACACTTA	5402	False	NA	NA	False	NA	NA	NA	10024679	9995591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533
5895	chrX	-	5835	33	Antisense	novelGene_ENSMUSG00000025862.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	176	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAGGGAGGGAGGGAGAG	NA	False	NA	NA	False	NA	NA	NA	41366052	41239558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_41239711_41290730_41290872_41294922_41295000_41299952_41300118_41306209_41306307_41309852_41309930_41312120_41312325_41313800_41313955_41315663_41315738_41317085_41317210_41317998_41318098_41318193_41318276_41322747_41322856_41323522_41323633_41325163_41325282_41325825_41325931_41335841_41335936_41336055_41336144_41336724_41336929_41338879_41338951_41339206_41339295_41339395_41339476_41341927_41342021_41342550_41342726_41345728_41345870_41346900_41347003_41348229_41348379_41349478_41349621_41351547_41351760_41354962_41355153_41358257_41358381_41360116_41360200_41364139
5896	chr10	+	4367	26	NNC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_25	60.2506232332911	296	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAAACCGCTAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	128139212	128157214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156281_128156602
5897	chr14	+	3523	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	349	junction_12	57.9852946875326	504	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56640136	56726892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
5898	chrX	-	3506	11	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-7	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	141.867156170835	1440	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTCCATTATGCCTG	NA	False	NA	NA	False	NA	NA	NA	156275069	156226847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243411_156244169_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
5899	chr15	-	2948	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-154	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1107.62795536227	4	57	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283949	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249497_81249602_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81261998_81262116_81262202_81267176_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
5900	chr7	+	3083	13	NIC	ENSMUSG00000038943.17	novel	3026	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	144	junction_12	247.456393464923	203	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	NA	False	NA	NA	NA	79944226	79966007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
5901	chr17	-	3057	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	166	-1076	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	274.816067750323	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAAATAGAGGGTATTG	9236	False	NA	NA	False	NA	NA	NA	24468380	24442247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24454509_24454624_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224
5902	chr2	+	3529	15	NNC	ENSMUSG00000026718.18	novel	5000	14	NA	NA	3	945	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	82.1702128362281	323	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTCTTAGTTACGTCAC	4685	False	NA	NA	False	NA	NA	NA	14078911	14153296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122197_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029_14152422_14152742
5903	chr18	+	3308	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	619.061777510936	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	67908065	67928557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918122_67920292_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
5904	chr7	-	3564	3	Fusion	ENSMUSG00000108446.2_ENSMUSG00000092335.2	novel	1425	4	NA	NA	-14	2252	multi-exon	FALSE	canonical	3	30	junction_2	106	70	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGTTTTTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	42241985	42226954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_42230333_42232070_42232132_42241860
5905	chr14	-	3227	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	-2	13	-2	-13	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	2255	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCACAAAACCTGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	67246328	67222700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
5906	chr18	+	3154	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	183	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	367.069346752686	4	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTTAAAACACACCTCTC	6432	False	NA	-90	True	NA	NA	NA	77126250	77241679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240614
5907	chr11	-	4380	24	FSM	ENSMUSG00000004040.17	ENSMUST00000103114.8	6042	24	-50	1712	25	0	multi-exon	FALSE	canonical	3	67	junction_2	102.13864331127	444	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCAGTGGGGGCTGGCTGG	NA	False	NA	NA	False	NA	NA	NA	100830280	100777635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100779587_100780303_100780367_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
5908	chr13	-	1587	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	5	-32	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2380.72947254168	27	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGTGTAGTGAAATCTT	5131	False	NA	NA	False	NA	NA	NA	58549950	58540104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
5909	chr1	+	3440	16	NNC	ENSMUSG00000023150.15	novel	3511	15	NA	NA	8	-160	at_least_one_novel_splicesite	TRUE	canonical	3	71	junction_8	421.06447117857	28	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACCCCTTTTCAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	151220276	151240006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917_151231063_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
5910	chr18	+	4840	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	1	-3493	1	3493	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	216	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACTGTGTCTATTTGG	5342	False	NA	NA	False	NA	NA	NA	21077682	21120412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
5911	chr3	-	2874	6	NNC	ENSMUSG00000027828.13	novel	2957	5	NA	NA	33	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	246.814424213821	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAAATGTGTTTTGTTT	2749	False	NA	NA	False	NA	NA	NA	65300011	65287087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_65289346_65289383_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
5912	chr2	-	4059	27	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	6	-240	intron_retention	FALSE	canonical	3	271	junction_23	29.6333611774729	1	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGAACCCAAACAGAGCAA	NA	False	NA	NA	False	NA	NA	NA	103591534	103552245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
5913	chr6	-	3116	19	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	9	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	270.483084065219	61	26	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	29	False	6217138	NA	False	NA	NA	NA	6217109	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114006_6114243_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6209709_6209804_6216995
5914	chr9	+	4320	35	NNC	ENSMUSG00000037286.16	novel	4800	35	NA	NA	0	103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_34	77.5835357360119	35	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCCTGTTGTACAATT	NA	False	NA	NA	False	NA	NA	NA	100525668	100838990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587_100838733_100838822
5915	chr7	+	3435	7	NIC	ENSMUSG00000058638.15	novel	2499	7	NA	NA	-198	-252	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	106.410238646894	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACCTTTGAGGAATTTTT	NA	False	NA	NA	False	NA	NA	NA	12569211	12584252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12569455_12569881_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
5916	chr14	-	3831	30	FSM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	6	9	6	-9	multi-exon	FALSE	canonical	0	0	junction_28	76.4571487859417	532	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGGCAAAGTCCAGTG	9751	False	NA	NA	False	NA	NA	NA	55873135	55862865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
5917	chr17	+	3345	18	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	380.807482988906	83	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGTGTCTCGTGGTGTAT	NA	False	NA	NA	False	NA	NA	NA	71923235	71966025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964548
5918	chr15	-	2464	18	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	19	329	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	780.21197989009	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTACTACCAAAGATATCAA	NA	False	NA	NA	False	NA	NA	NA	11399732	11383761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
5919	chrX	-	3003	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3737	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	413.376474143123	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23185155	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086111_23086430_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
5921	chr5	-	4264	27	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	293.639781034378	4	105	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8108	False	NA	NA	False	NA	NA	NA	100564093	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100523819_100523913_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533158_100533986_100534063_100536392_100536462_100538583_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
5924	chr16	+	5928	31	FSM	ENSMUSG00000023088.18	ENSMUST00000100167.10	6792	31	2	862	2	833	multi-exon	FALSE	canonical	3	92	junction_2	17.5139626837814	203	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACCATTTTATTTTTATTT	7160	False	NA	NA	False	NA	NA	NA	14179425	14292739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_14179508_14207670_14207848_14209181_14209308_14211816_14211955_14214214_14214341_14221853_14221916_14222877_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563_14237657_14240920_14241125_14254370_14254518_14255509_14255598_14257850_14257924_14261211_14261339_14263156_14263334_14265341_14265510_14266263_14266448_14275751_14275834_14276860_14276994_14277620_14277832_14278761_14279073_14282906_14283107_14283967_14284095_14284860_14284963_14285686_14285834_14288333_14288493_14289801_14289969_14290674_14290870_14291323
5925	chr4	+	2472	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-2	2569	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	124.971343654031	634	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTCTACAAGGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	147576871	147600512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801_147597112_147597361_147597610_147597943_147598100_147599018_147599761_147599862
5926	chr8	-	3754	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21249	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.13938165239	19	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGAGCTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	81585876	81491067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492369_81492573_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
5927	chr18	+	3957	13	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-38	-22	intron_retention	FALSE	canonical	3	938	junction_10	106.221826330039	2	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGACATTGTTTATGCTT	6211	False	NA	NA	False	NA	NA	NA	34758021	34765835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34762644_34763054_34763220_34763339_34763678_34764198_34765117_34765353
5928	chr4	-	4672	11	FSM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	23	-126	23	126	multi-exon	FALSE	canonical	3	279	junction_10	28.2349074728429	333	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CATAGAAAAAAAAAAAATCA	7883	False	NA	NA	False	NA	NA	NA	129534835	129519744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
5929	chr6	+	2766	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	-70	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	492.902768189517	67	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTGGCTTTGTCGTTTG	2873	False	NA	NA	False	NA	NA	NA	122285887	122294635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290849_122292015_122292126_122292262_122292394_122293008_122293136_122293286
5930	chr4	-	4000	6	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	49	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	552.345326765783	780	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000076	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953432_134966213_134966283_134999828
5931	chr4	-	3148	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-83	-5	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	624	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGTGTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	141325618	141303377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325424
5932	chr11	+	2922	16	NNC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	28	1205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	228.431891138013	20	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCATGGAAGCAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	4110382	4130624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124172_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
5933	chr13	-	2820	16	NIC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	10	400	combination_of_known_junctions	FALSE	canonical	3	12	junction_15	195.391982094114	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTTCTATGCCTAGTAA	NA	False	NA	NA	False	NA	NA	NA	9046076	9022115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9045984
5935	chr7	-	4225	9	Antisense	novelGene_ENSMUSG00000091474.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	139	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGTCCAGCCTCCAAGCA	NA	False	NA	NA	False	NA	NA	NA	41277957	41248750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_41248823_41251169_41251240_41252301_41252422_41252859_41252958_41261098_41261350_41261794_41261920_41262577_41262672_41274142_41274255_41274674
5936	chr18	+	2781	4	NNC	ENSMUSG00000057561.11	novel	2865	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	761.070007000378	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	46730770	46743278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731707_46731768_46740570_46740679_46740762
5937	chr16	-	6120	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	5	2	5	-2	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	223	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCCGAGCCTCGGTTGA	3248	False	NA	NA	False	NA	NA	NA	78373540	78337227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
5938	chr11	-	3230	28	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	-11	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	371.73174244365	1	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATGAACAGGACATTCT	8487	False	NA	NA	False	NA	NA	NA	102771772	102729324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737490_102738797_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
5939	chr11	-	5125	36	NNC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	33	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	583.841871239332	1	208	19	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAATAAATCTTCTAAAC	NA	False	NA	NA	False	NA	NA	NA	98914971	98883799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98884232_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892273_98893706_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900513_98900614_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905236_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913813_98914871
5940	chr6	-	3229	8	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	0	-17	intron_retention	FALSE	non_canonical	0	0	junction_2	285.65449374361	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTAGGTTCTACCCAA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72412098_72412188_72412227_72412788_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
5941	chr18	-	2667	18	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	55	-219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1520.7731734163	10	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	254	False	NA	NA	False	NA	NA	NA	35087355	35070685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075010_35075117_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
5942	chr15	-	3097	10	ISM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	31634	1021	-23679	-1021	3prime_fragment	FALSE	canonical	3	692	junction_4	107.736303589417	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTAAAGGTGAGAGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	99741703	99677371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555
5943	chrUn_JH584304v1	-	2948	6	Intergenic	novelGene_4651	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	111	junction_3	279.918988280538	17	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACCATAGCTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	59016	52671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55464_55702_56985_57152_58563
5944	chr1	+	3068	14	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	11	-528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	268.867557197981	7	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTAGTCCTCTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	93406767	93437454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434_93436200_93436300
5945	chr4	-	5031	18	FSM	ENSMUSG00000028906.18	ENSMUST00000146021.8	5074	18	20	23	-9	-7	multi-exon	FALSE	canonical	3	68	junction_5	24.1593613426437	138	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACTTTAAAAAAAAAAAAA	5329	False	NA	NA	False	NA	NA	NA	131802612	131650746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
5946	chr15	-	2882	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-86	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	711.346005041772	1	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGACCTTCCCCCATT	NA	False	NA	NA	False	NA	NA	NA	81283881	81247870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248306_81248405_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
5948	chr16	-	2456	11	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	866.82240972416	683	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAACTTGTTTTTACAAA	NA	False	NA	NA	False	NA	NA	NA	22084679	22064632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22076912_22076979_22077614_22078012_22084490
5949	chr13	+	3120	4	Antisense	novelGene_ENSMUSG00000113841.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	193	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGGAACACAGAGCACC	NA	False	NA	NA	False	NA	NA	NA	62515327	62614614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_62518164_62519374_62519437_62519622_62519751_62614520
5950	chr18	-	3240	28	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	-5	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	559.767598258739	5	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATCTAATAAACTTGCAT	NA	False	NA	NA	False	NA	NA	NA	42395199	42335441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335656_42349948_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360363_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
5953	chr9	-	2870	6	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	21	-1	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_1	1780.14781408736	89	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTAGTGCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	110775205	110768671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110770848_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
5954	chr11	-	2850	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	762	-99	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	287.386306021858	52	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTACCATTTTGACGG	NA	False	NA	NA	False	NA	NA	NA	11758163	11750386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11752762_11752850_11753064_11756095_11756216_11758021
5955	chr8	+	2926	16	Antisense	novelGene_ENSMUSG00000031696.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGAGCCTTGCGAGCCCC	NA	False	NA	NA	False	NA	NA	NA	85987968	86026146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85988768_85989939_85990183_85990775_85990952_85997320_85997445_86000100_86000254_86001445_86001657_86005332_86005482_86005588_86005686_86007864_86007973_86008467_86008551_86010618_86010836_86012969_86013153_86014324_86014449_86016334_86016431_86021486_86021587_86026083
5956	chr2	+	2913	19	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-4	-1514	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	252.714699089314	2	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCAAAATGAAACCAAAAAC	7218	False	NA	NA	False	NA	NA	NA	23046525	23087758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073255_23076219_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083256_23084576_23084656_23084746_23084821_23085333_23085421_23086899
5957	chr8	-	2374	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	187.671567596028	3779	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615020	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
5958	chr8	-	6550	12	FSM	ENSMUSG00000033658.17	ENSMUST00000065784.6	3104	12	25	-3471	25	0	multi-exon	FALSE	canonical	3	86	junction_11	90.7354705715175	257	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGTATTTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	111758358	111729819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
5959	chr10	+	2650	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	-24	543	0	-131	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGATGTATATTTTGGTAA	1561	False	NA	NA	False	NA	NA	NA	79690438	79700062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
5960	chr8	+	2861	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-8	-764	multi-exon	FALSE	non_canonical	0	0	junction_5	531.296677949336	67	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAGGTGTGGCACCATT	NA	False	NA	NA	False	NA	NA	NA	19834753	20045124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20043726_20044915
5962	chr1	-	2293	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	31	5878	-5	-33	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	581	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCATTTTAAAGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	86287091	86278318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
5964	chr3	-	3867	6	Fusion	ENSMUSG00000038975.15_ENSMUSG00000065463.3	novel	1271	9	NA	NA	-10	0	intron_retention	FALSE	canonical	3	638	junction_3	175.314118085224	14	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6168	False	NA	NA	False	NA	NA	NA	153618578	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_153613379_153613691_153613842_153614426_153615236_153615700_153615799_153615897_153616004_153616327
5965	chr16	-	3281	22	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	427.16709598371	3	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	91443834	91418282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433901_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
5966	chr14	-	3923	27	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	256	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.515099672693	8	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAACTGGGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	52434617	52397916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52398000_52398447_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
5968	chr1	+	4513	24	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	56.635170460424	91	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	128031036	128165473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144209_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
5969	chr16	-	4213	7	FSM	ENSMUSG00000022544.15	ENSMUST00000139584.2	987	7	-5	-3221	-5	-2	multi-exon	FALSE	canonical	3	438	junction_1	22.2517165380311	79	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATGTGCGCATGTGCAC	NA	False	NA	NA	False	NA	NA	NA	5073825	5062017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
5970	chr10	+	2756	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_14	446.012812115783	2	39	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	1624	False	NA	NA	False	NA	NA	NA	79690501	79700266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699778_79699890
5971	chr13	-	2894	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	0	405	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	190.507371494517	4	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTATGCCTAGTAACTTAA	NA	False	NA	NA	False	NA	NA	NA	9046086	9022110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041821_9042012_9042072_9042680_9042852_9045984
5972	chr14	+	3235	17	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	5	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	406.837479068731	4	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCTTTCTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	19801337	19861845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801602_19828979_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
5973	chr7	+	2846	15	NNC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	301.013865027469	53	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79944222	79966002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954494_79954566_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
5974	chr8	-	3654	8	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	-17	-6	at_least_one_novel_splicesite	FALSE	non_canonical	2	150	junction_1	523.121595885347	3	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACATGTTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	125589721	125563689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
5975	chr7	+	2403	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-26	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	261	False	NA	NA	False	NA	NA	NA	44465697	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478039_44478169
5976	chr6	-	2622	6	NIC	ENSMUSG00000039985.15	novel	2737	6	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_5	837.245818144229	32	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847667	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847544
5977	chr5	-	877	5	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	18488	0	5581	0	3prime_fragment	FALSE	canonical	3	651	junction_2	70.2224145127466	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	34799004	34795879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666
5978	chr2	+	3938	15	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	-9	-14	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_9	74.8812665600192	351	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATGGAAGCCATATGT	NA	False	NA	NA	False	NA	NA	NA	128942905	128968500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955648_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
5980	chr11	+	3058	5	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53093	1634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	136.832013797941	55	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTGTGCCTGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	62402526	62406877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62402615_62402692_62403098_62403729_62404697_62404755_62405978_62406501
5981	chr9	+	3113	14	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	10	38	intron_retention	FALSE	non_canonical	0	0	junction_13	266.255760834418	17	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATGCTAACTCATACTAA	5522	False	NA	NA	False	NA	NA	NA	35122460	35128348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
5983	chr18	-	2452	16	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	7	-224	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1611.6349241962	6	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGATCTCCTTTGTGAATG	206	False	NA	NA	False	NA	NA	NA	35087403	35070690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35074990_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
5984	chr9	-	3970	9	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	-5	-29	intron_retention	FALSE	canonical	3	83	junction_1	122.01991384606	11	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCCCAACCATAAAATCAT	2199	False	NA	NA	False	NA	NA	NA	58157021	58125853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58142217_58154257_58154722_58156823
5985	chr14	-	3590	29	NIC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	23	-10	intron_retention	FALSE	canonical	0	0	junction_27	75.9666531970389	46	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATAAAGCAGAGCTGT	9768	False	NA	NA	False	NA	NA	NA	55873118	55863206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
5986	chr13	+	3366	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	-121	0	-54	0	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	1086	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120151860	120169618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
5987	chr17	+	2649	13	NIC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	49	-7	intron_retention	FALSE	canonical	3	1213	junction_1	81.0610195401519	21	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATACTTGGTTCTCTAG	NA	False	NA	NA	False	NA	NA	NA	21165797	21186160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177375_21178981_21179097_21179201_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
5989	chr11	-	2767	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	16	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.815131191409	161	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTACTTTCTTTGACTG	NA	False	NA	NA	False	NA	NA	NA	75239103	75191180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191834_75191907_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
5990	chr6	-	4330	31	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-33	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	130.318004213624	3	100	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTTTAAGCATCCTGTC	3460	False	NA	NA	False	NA	NA	NA	125168599	125144979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148884_125150346_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
5992	chr3	-	4549	23	FSM	ENSMUSG00000033222.17	ENSMUST00000076941.12	4541	23	-8	0	-8	0	multi-exon	FALSE	canonical	3	226	junction_14	22.0712594988997	256	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	100876987	100846175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
5993	chr5	-	3907	16	NIC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	10	1	intron_retention	FALSE	canonical	3	1728	junction_3	186.324161968687	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCTGAAGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	122959323	122925792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
5994	chr16	-	3018	13	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	15	113	intron_retention	FALSE	canonical	3	4287	junction_7	240.960692967869	3	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292732	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87283240_87283320_87283409_87283482_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
5995	chr7	+	4944	31	NNC	ENSMUSG00000013928.14	novel	1182	4	NA	NA	-39759	-1541	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	67	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTACGCTTCTTAACAGCC	NA	False	NA	NA	False	NA	NA	NA	29939759	29979779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29939912_29940003_29940146_29940659_29941255_29941439_29941489_29941567_29941698_29941820_29941938_29942170_29942303_29942467_29942567_29942855_29942958_29943256_29943966_29944713_29944935_29947043_29947094_29949203_29949337_29950099_29950226_29950816_29950885_29950961_29951068_29951738_29951816_29953406_29953529_29953609_29953682_29955232_29955358_29957480_29957566_29960698_29960894_29962038_29962169_29964500_29964697_29967203_29967374_29969579_29969755_29970101_29970242_29971031_29971203_29973372_29973434_29974524_29974612_29979572
5996	chr5	-	4309	26	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	100.289979559276	1	90	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGGTGCAGTCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	108777606	108717290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108738969_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108772895_108772958_108777366
5997	chr10	-	2694	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	47	84	47	-84	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAATGTAAATTTGTAC	NA	False	NA	NA	False	NA	NA	NA	86541326	86526787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
5998	chr7	-	3070	3	NIC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_2	158	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342191	42309528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_42312421_42314181_42314243_42342074
6000	chr10	-	5857	26	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2499	0	at_least_one_novel_splicesite	FALSE	canonical	3	151	junction_17	303.884172671102	7	70	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTGGAGTGGGCCTTTT	9352	False	NA	NA	False	NA	NA	NA	121464736	121423284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447459_121447578_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
6001	chr4	+	2691	4	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	13	-17	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	41.5237549147741	4	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGAAAGATTCAACAAGTT	NA	False	NA	NA	False	NA	NA	NA	147637746	147669638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147661481_147661561_147665698_147665826_147667290
6002	chr5	-	3329	11	NIC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	750	-1	intron_retention	FALSE	canonical	3	1363	junction_6	87.5694581460911	11	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCCTGGGTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	24781715	24770343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516
6004	chr1	-	4499	29	NNC	ENSMUSG00000042699.12	novel	4616	28	NA	NA	0	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	39.7712047150925	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAAAATTGATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	153363397	153331514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_153332188_153332284_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
6006	chr18	-	4847	18	FSM	ENSMUSG00000041225.17	ENSMUST00000077128.13	4431	18	-88	-328	-25	-30	multi-exon	FALSE	canonical	3	72	junction_11	36.3783463484115	297	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAACAAAACCAGTAATATT	-48	True	NA	NA	False	NA	NA	NA	6135995	6024456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
6007	chr2	-	3918	3	FSM	ENSMUSG00000078869.3	ENSMUST00000108963.2	1050	3	-2028	-840	-2028	840	multi-exon	FALSE	canonical	3	501	junction_1	30.5	3	101	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATTTGCATGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	176960857	176955606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_176957402_176958542_176958604_176958795
6008	chr15	+	1091	7	Antisense	novelGene_ENSMUSG00000022234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGCCTTCCACTTTA	NA	False	NA	NA	False	NA	NA	NA	31590962	31594556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_31591202_31592430_31592612_31592791_31592930_31593012_31593201_31593662_31593783_31594244_31594393_31594479
6009	chr10	+	774	8	FSM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	-17	1	-14	-1	multi-exon	FALSE	canonical	3	1255	junction_1	343.259525783067	8638	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGTGTGTTCTGTGTGG	9675	False	NA	NA	False	NA	NA	NA	80085268	80092625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
6012	chr14	+	1477	8	NIC	ENSMUSG00000022033.10	novel	451	5	NA	NA	14	-2	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	250.309767272148	177	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTCAGCATTATCTGTTT	NA	False	NA	NA	False	NA	NA	NA	66043694	66055269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_66043752_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
6013	chr11	+	3106	14	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_5	222.258179207992	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788923	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792935_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
6015	chr2	+	4414	34	NNC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	4	1	intron_retention	FALSE	non_canonical	0	0	junction_19	95.1509457616625	1	78	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGTAGGCTGTCCAATA	NA	False	NA	NA	False	NA	NA	NA	180961535	180998372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980027_180980148_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991377_180991471_180991503_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
6016	chrX	+	3367	22	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	24	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	190.525207978586	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799447	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810853_150816742_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
6017	chr9	-	4513	6	NNC	ENSMUSG00000032449.14	novel	5227	7	NA	NA	29	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	525.207235289081	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTGTATCTTAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	96993181	96957625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96982122_96982293_96992963
6019	chr10	+	2576	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	25	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	272.669980686079	62	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACAGATCTGGCCTTGT	7015	False	NA	NA	False	NA	NA	NA	60113474	60138370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60138148_60138188
6021	chr1	+	4581	25	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	78.1619468191239	7	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	128031062	128165473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128090505_128090596_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139101_128144209_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
6022	chr6	-	3332	25	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	216.695442800617	1	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	10	True	NA	NA	False	NA	NA	NA	29609615	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29540879_29541578_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29602857_29602910_29609364
6023	chr11	+	4108	6	NIC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	-2	intron_retention	FALSE	canonical	3	4384	junction_3	763.782796349852	23	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCGGGGTGTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	95557835	95571597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95568973_95570519
6024	chr2	+	3360	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	-45	1	-45	-1	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	794	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTGCTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	129040638	129053535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
6025	chr8	+	4135	17	FSM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	30	36	3	-34	multi-exon	FALSE	canonical	3	438	junction_4	79.6960779696843	1265	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACATAATAAAATAATTCTA	NA	False	NA	NA	False	NA	NA	NA	69246610	69282026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
6026	chr7	-	3468	26	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	290.491566831122	243	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198201	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184859_44185371_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
6027	chr15	-	3311	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-12	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	959.524621883149	3	80	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGACCTTCCCCCATT	NA	False	NA	NA	False	NA	NA	NA	81284256	81247870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249327_81249369_81249780_81250547_81250691_81253594_81253641_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
6028	chr9	+	5804	22	FSM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	-36	2	-36	-2	multi-exon	TRUE	canonical	3	193	junction_6	38.4690587449917	537	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGACTCGTTGTGTTTT	2590	False	NA	NA	False	NA	NA	NA	54771036	54819812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
6029	chr16	-	2315	3	ISM	ENSMUSG00000033581.18	ENSMUST00000134188.8	3267	14	25160	-12	-261	-7	3prime_fragment	FALSE	canonical	3	902	junction_2	76.5	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21882708	21877811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_21879636_21880609_21880724_21882331
6030	chr2	+	4336	35	NNC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	-3	0	intron_retention	FALSE	canonical	2	5	junction_34	66.2673885256309	1	81	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	180961542	180998409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716_180998052_180998128
6031	chr10	+	1927	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	57	16	0	-16	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	6437	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCACTCCTGAATTAG	903	False	NA	NA	False	NA	NA	NA	127894879	127913125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
6032	chr10	+	3979	22	NIC	ENSMUSG00000019823.18	novel	3292	23	NA	NA	-4	-6	intron_retention	FALSE	canonical	3	163	junction_16	19.2245355324884	29	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAACAGGGTTTATGCTC	9111	False	NA	NA	False	NA	NA	NA	41352327	41363020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
6033	chr19	-	4633	29	NIC	ENSMUSG00000025159.9	novel	6607	31	NA	NA	1	-1	intron_retention	FALSE	canonical	3	137	junction_13	29.9010912025304	37	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCACACTCACGTGTACTG	NA	False	NA	NA	False	NA	NA	NA	41969574	41932644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41933020_41933095_41933197_41933767_41934063_41934171_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
6034	chr1	-	4236	8	FSM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	0	642	0	-642	multi-exon	FALSE	canonical	3	259	junction_7	57.9852197916479	471	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATGTCGGTCTGCCCTGC	8591	False	NA	NA	False	NA	NA	NA	88205355	88190834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
6035	chr3	-	3509	26	NNC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	-598	-2	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_25	279.490925791876	1	59	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACTCTGCGTTCTTTCC	7125	False	NA	NA	False	NA	NA	NA	89956204	89913528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89956126
6036	chr13	-	4183	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	-17	-4	-17	4	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	644	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCACAGTACTTTTGT	NA	False	NA	NA	False	NA	NA	NA	104246139	104159560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
6037	chr4	-	1729	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	31	5	31	-5	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	30	False	NA	NA	False	NA	NA	NA	41098152	41092726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
6038	chr11	-	2438	11	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	-1	intron_retention	FALSE	canonical	0	0	junction_1	579.107252587981	4447	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCCATTGTCACTGCTGC	3747	False	NA	NA	False	NA	NA	NA	120463699	120451131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452048_120452982_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
6039	chr12	+	3970	15	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-826	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	304.034646589053	5	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAAAAAAAGTGTGAAGTA	1626	False	NA	NA	False	NA	NA	NA	109602447	109628140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611237_109611337_109611695_109611766_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109624486_109624556_109626156_109626242_109627179
6041	chr18	+	4045	14	ISM	ENSMUSG00000037236.17	ENSMUST00000235199.2	3107	15	9040	-657	-442	-24	3prime_fragment	FALSE	canonical	3	826	junction_1	180.667762029329	1	117	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTGAATACCAATAAAAAA	1321	False	NA	NA	False	NA	NA	NA	35704537	35724448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
6042	chr9	+	4673	34	NNC	ENSMUSG00000037286.16	novel	6186	34	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_33	101.951193782527	35	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGTTCTCAAGTTATCAG	NA	False	NA	NA	False	NA	NA	NA	100525668	100839457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100836273_100836389_100838421_100838503_100838587_100838729_100838821
6043	chr5	+	2863	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1029.90511968606	2	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGTATCTTTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	34493800	34510775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500019_34504118_34504246_34506007_34506088_34507247_34507416_34508133_34508183_34508574
6044	chr13	+	3351	17	Antisense	novelGene_ENSMUSG00000116207.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	243	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCTAACTCTCTAGGAAA	5671	False	NA	NA	False	NA	NA	NA	119472066	119545981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_119472941_119474909_119475028_119476362_119476479_119491191_119491279_119494040_119494198_119502861_119503042_119505010_119505170_119506444_119506681_119508930_119509128_119511164_119511266_119518206_119518400_119523114_119523211_119525737_119525818_119531146_119531363_119533280_119533512_119541086_119541291_119545875
6045	chr10	+	3712	28	FSM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	-45	2	-45	-2	multi-exon	FALSE	canonical	3	315	junction_27	39.2310170953031	657	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGTTCAGCTAGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	3923072	4106109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
6046	chr2	-	3843	34	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.171419825742193	37	11	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCCAGGTGTGCACCCGA	NA	False	NA	NA	False	NA	NA	NA	180997816	180962097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180962221_180962596_180962857_180964108_180964302_180964591_180964687_180965154_180965236_180965474_180965536_180970393_180970472_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981033_180982286_180982387_180983315_180983366_180988618_180988698_180988803_180988886_180990965_180991101_180991255_180991368_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180996233_180996798_180996917_180997100_180997345_180997441_180997604_180997714
6047	chr18	-	2595	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	137	13	0	-2	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	2	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACCAAAACACTTTGCT	NA	False	NA	NA	False	NA	NA	NA	64649586	64632730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
6048	chr4	+	4309	17	NNC	ENSMUSG00000028274.18	novel	4157	16	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_3	92.7669922103223	449	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACACACCTGTGTCTTTC	-12	True	NA	NA	False	NA	NA	NA	33310334	33502606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_33310525_33320518_33320629_33323654_33323839_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
6050	chr2	+	4034	22	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	343.861116034049	1	95	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7233	False	NA	NA	False	NA	NA	NA	29779836	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29780777_29781015_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
6051	chr1	+	1973	2	Genic_Genomic	ENSMUSG00000048538.8	novel	1299	1	NA	NA	-57	705	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGCCTAAAAAAAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	7247905	7249966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_7248388_7248475
6053	chr3	+	3302	17	NNC	ENSMUSG00000068823.11	novel	3457	18	NA	NA	-14	-22	intron_retention	FALSE	canonical	0	0	junction_3	5726.4994747555	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAAACCATTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	102927908	102964426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102947248_102947363_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962829_102963660_102963794_102964201
6054	chrX	-	2948	25	Intergenic	novelGene_4067	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	20	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGAGCGGATGTGACGTC	NA	False	NA	NA	False	NA	NA	NA	143152666	143101012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101116_143102996_143103054_143105003_143105145_143119105_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127330_143128643_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256_143134372_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147102_143150892_143150933_143152553
6055	chr17	+	3786	16	Antisense	novelGene_ENSMUSG00000004865.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	87	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGGAGAGAGGGATGGATG	4827	False	NA	NA	False	NA	NA	NA	28806623	28841013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_28808218_28808777_28809218_28810178_28810273_28811194_28811261_28813142_28813256_28817877_28817976_28818443_28818844_28819216_28819442_28819850_28819868_28821667_28821826_28822409_28822514_28824267_28824363_28825281_28825369_28826055_28826166_28827616_28827738_28840949
6057	chr6	+	3248	15	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	631	7	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCACCTCAGGGGCGGGGG	1078	False	NA	NA	False	NA	NA	NA	122295257	122316595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298827_122299043_122299283_122299431_122299965_122300777_122302418_122302908_122309478_122309571_122310249_122310400_122311028_122311112_122311933_122312042_122313815_122313974_122316555
6060	chr3	-	4251	8	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	5	-9	intron_retention	FALSE	canonical	2	6	junction_6	275.442871590833	1	76	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCGAGACAATTATTGCAT	NA	False	NA	NA	False	NA	NA	NA	10416368	10405023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411298_10412224_10412472_10413569_10413613_10413746_10416118_10416301
6061	chr2	-	4312	18	NNC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	84.0932502670959	4	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84481000	84431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84431410_84432307_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
6062	chr1	-	4380	7	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	11026	-19	at_least_one_novel_splicesite	FALSE	canonical	2	45	junction_6	361.009541271265	807	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGAATTCAACTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	167101144	167050470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167100931
6065	chr15	+	2557	17	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	491.387894132527	4	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793737_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
6066	chr8	+	2004	1	Intergenic	novelGene_1759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGTCATATGGTCCAAGT	NA	False	NA	NA	False	NA	NA	NA	112385587	112387591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_112385600_112387600
6067	chr8	+	3096	2	ISM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	20995	129	20964	-126	3prime_fragment	FALSE	canonical	3	60	junction_1	0	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTTTAAAAAAAGATTAT	NA	False	NA	NA	False	NA	NA	NA	112391132	112397514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_112392837_112396122
6070	chr6	-	3725	27	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	125.178405230673	10	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3502	False	NA	NA	False	NA	NA	NA	125168557	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145132_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
6071	chr10	+	4464	19	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-14575	1	intron_retention	FALSE	canonical	2	9	junction_12	123.707191124051	3	92	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTGTCACTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	25259981	25399412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25260309_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25371342_25371490_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
6072	chr9	-	1280	1	Genic_Genomic	ENSMUSG00000070282.7	novel	NA	NA	NA	NA	-17	-1070	mono-exon	FALSE	NA	NA	NA	NA	NA	567	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCCTGTTCCAGAGACAG	NA	False	NA	NA	False	NA	NA	NA	109661791	109660511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_109660500_109661800
6073	chr5	+	2270	13	NIC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-20	intron_retention	FALSE	canonical	3	3618	junction_3	479.488008192071	1740	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGCTACTGGATCATT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
6074	SIRV7	-	2464	5	FSM	SIRV7A	SIRV701	2462	5	0	-2	0	-1	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	84	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147923	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
6075	chr8	+	4022	4	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	13	3155	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_3	385.262104143256	468	23	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTGGTGTCTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	20016478	20049043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036156_20045732
6076	chr10	+	5250	17	NIC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	828	junction_13	98.4351785440551	6	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTATTGCAAAAATGTG	NA	False	NA	NA	False	NA	NA	NA	21171925	21244781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
6077	chr2	+	3649	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-109	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	834.411708575739	465	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162896497	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896667_162901429_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
6079	chr6	-	2299	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	80	177	80	-177	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTCCTGTCCATGGACT	8565	False	NA	NA	False	NA	NA	NA	145021830	144945060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
6081	chr17	+	757	2	NNC	ENSMUSG00000061607.16	novel	422	3	NA	NA	-1	-1910	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAATTTTTCTGCTTCA	9389	False	NA	NA	False	NA	NA	NA	36152566	36155013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36153216_36154905
6082	chr9	-	1910	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	17	5	17	-5	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	5	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGTGAGTAGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	110775209	110768675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
6083	chr6	-	3010	18	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-1064	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_17	166.310170056915	54	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6192383	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6192314
6084	chr16	-	2776	13	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-2	110	intron_retention	FALSE	canonical	3	4287	junction_7	363.738793259974	23	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87292749	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
6085	chr2	+	3079	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	149	1479	0	-1479	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	1287	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGATCTTTCTCTGTCGCC	7222	False	NA	NA	False	NA	NA	NA	23046529	23087793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
6086	chr2	+	4216	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	12	0	-12	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	565	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCTGTTATTTCAGGG	NA	False	NA	NA	False	NA	NA	NA	109721197	109731336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
6088	chr2	+	4246	24	Fusion	ENSMUSG00000017861.12_ENSMUSG00000017858.13	novel	2248	13	NA	NA	10	111	intron_retention	FALSE	non_canonical	0	0	junction_5	1390.59738968151	2	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTACTTCCTACAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	162859420	162924730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869948_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122_162887297_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469
6090	chr7	-	3847	1	NIC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	46557	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	99	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAATTTTCATTAGTAAT	NA	False	NA	NA	False	NA	NA	NA	42470101	42466254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_42466300_42470100
6092	chrX	+	3349	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	284.450103832373	1	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	NA	False	NA	NA	NA	150799449	150844963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809442_150809527_150809767_150810689_150810736_150812186_150812395_150816694_150816774_150817024_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
6093	chr5	-	3394	16	FSM	ENSMUSG00000029472.14	ENSMUST00000196423.5	3376	16	-27	9	-13	1	multi-exon	FALSE	canonical	3	855	junction_7	355.400894140062	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCTGAAGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	122959370	122925792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
6094	chr4	+	3014	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	72	1263	72	0	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	74	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	-14	True	NA	NA	False	NA	NA	NA	40970977	41012608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
6095	chr6	+	5682	37	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	1113	1515	525	-1515	internal_fragment	FALSE	canonical	3	85	junction_7	109.41662082874	19	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTGCCGAGCCTG	2721	False	NA	NA	False	NA	NA	NA	125074056	125106033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079433_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754
6096	chr8	+	5999	6	NIC	ENSMUSG00000091490.4	novel	1395	7	NA	NA	5	-1	intron_retention	FALSE	canonical	3	424	junction_1	56.806337674594	26	109	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGTGGCTCTCTGCATG	NA	False	NA	NA	False	NA	NA	NA	43633582	43646917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43643129_43643305_43643407_43646239
6097	chr9	-	404	2	Genic_Genomic	ENSMUSG00000058443.6	novel	768	1	NA	NA	-14	5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	409	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACAGGGAATCCCCTGAG	NA	False	NA	NA	False	NA	NA	NA	50256282	50255495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_50255732_50256114
6098	chr6	+	2785	14	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	-74	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	457.116069058741	1518	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCTATCCCTTTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	71808240	71852243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
6099	chr2	+	7085	6	Antisense	novelGene_ENSMUSG00000035666.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	87	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCAGGCCCCGAGCGCCA	9628	False	NA	NA	False	NA	NA	NA	28712310	28730331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_28716810_28717489_28717577_28720511_28720648_28723564_28725388_28726036_28726140_28729894
6100	chr11	-	2363	10	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	-6	intron_retention	FALSE	canonical	0	0	junction_3	620.361861743751	8	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTACCCATTGTCACT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453388_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
6101	chr13	+	3338	9	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	2271	39861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	86	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGCGAGCGGGCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	59782809	59823597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59785216_59786118_59786225_59790055_59790201_59792905_59793040_59797378_59797480_59798509_59798564_59812010_59812192_59813340_59813486_59823531
6103	chr3	-	3093	11	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	13	-160	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	547.543057667614	1	36	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAATTGTGTCTGTCCTT	9291	False	NA	NA	False	NA	NA	NA	104771703	104730254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104754166_104754345_104771655
6104	chr19	-	4786	23	NIC	ENSMUSG00000024908.16	novel	4841	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_9	104.980212618009	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	3625716	3504927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523816_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
6106	chr11	-	2422	11	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	2	intron_retention	FALSE	canonical	0	0	junction_5	588.51780771698	18	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454178_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
6107	chr12	-	2109	1	NIC	ENSMUSG00000041359.15	novel	535	3	NA	NA	20	-2375	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCATGCCTATGTGGTAT	NA	False	NA	NA	False	NA	NA	NA	105189032	105186923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_105186900_105189000
6108	chr12	-	4322	1	Genic_Genomic	ENSMUSG00000041359.15	novel	NA	NA	NA	NA	2722	1168	mono-exon	FALSE	NA	NA	NA	NA	NA	4	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCCCAACCCCAAACTCA	NA	False	NA	NA	False	NA	NA	NA	105186162	105181840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_105181800_105186200
6110	chr8	+	5676	2	FSM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	16	0	16	0	multi-exon	FALSE	canonical	3	69	junction_1	0	331	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTCCTTTAGTTCGA	NA	False	NA	NA	False	NA	NA	NA	105318098	105325658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105318228_105320111
6111	chr2	+	5199	33	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	32	10	intron_retention	FALSE	canonical	3	25	junction_10	76.0197278569024	1	136	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGCAACTTCCTCCTAG	NA	False	NA	NA	False	NA	NA	NA	180961609	180997820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980027_180980148_180980848_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
6112	chr9	+	5051	35	FSM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	89	9	89	-8	multi-exon	FALSE	canonical	3	212	junction_3	21.5907395566265	21	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAATATAACCTAGCAT	NA	False	NA	NA	False	NA	NA	NA	26942033	27006599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
6113	chr7	+	2809	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	120	1068	-68	21	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCTTTGGGAATACTAAA	NA	False	NA	NA	False	NA	NA	NA	102091021	102117910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
6114	chr10	+	3300	12	NIC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	16	-7	intron_retention	FALSE	canonical	3	1615	junction_6	222.659730018476	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCATGGGATGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	111309118	111332738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111330155_111330655_111331237_111331900
6115	chr11	+	2846	18	NNC	ENSMUSG00000040463.17	novel	4448	25	NA	NA	7	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	658.93523212711	10	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332189	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336852_72339964_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
6116	chrX	+	4934	22	Antisense	novelGene_ENSMUSG00000031095.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	226.588221719979	1	185	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTGATGGCTGTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	37620492	37661345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_37622608_37625999_37626150_37627828_37628004_37628876_37628985_37629815_37629928_37630927_37631036_37632208_37632297_37633624_37633739_37634370_37634468_37635563_37635748_37636709_37636841_37637303_37637373_37638084_37638167_37638462_37638555_37638713_37638876_37639741_37639811_37640525_37640601_37641258_37641374_37650492_37650594_37652532_37653080_37653808_37653982_37661278
6117	chr2	+	2901	8	NIC	ENSMUSG00000027405.17	novel	2960	7	NA	NA	0	-5	intron_retention	FALSE	canonical	3	48	junction_6	856.791165944664	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGATAGTATGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118574_130118951_130119891_130120075
6118	chr8	-	2791	12	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-7	-177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	385.382561889176	68	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACCGGTGTGTGGTCATT	NA	False	NA	NA	False	NA	NA	NA	80438306	80410267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411907_80412573_80412686_80414069_80414193_80426020_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
6119	chr1	-	2842	18	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	1278.88124497716	1	31	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287409	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277139_128279283_128279420_128281196_128281308_128283249_128283397_128286096_128286203_128287195
6120	chr5	-	2458	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	14	769	14	-601	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTATACATTTTGCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64126226	64067008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
6121	chr5	-	4459	17	FSM	ENSMUSG00000045078.13	ENSMUST00000053498.13	4474	17	14	1	0	-1	multi-exon	FALSE	canonical	3	121	junction_14	28.015550927119	231	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	6144	False	NA	NA	False	NA	NA	NA	143098735	142976648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143098653
6122	chr11	+	3438	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-40	-2	intron_retention	FALSE	canonical	0	0	junction_13	213.184838837578	2	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788856	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798795_74798871_74798947_74799053
6123	chr4	-	3894	14	FSM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	-1	0	-1	0	multi-exon	FALSE	canonical	3	315	junction_5	49.639648211447	331	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	133914424	133857168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
6124	chr11	-	4993	16	NNC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	-577	-2	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_15	56.9102997903035	114	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTCAGGCTTTTCT	9755	False	NA	NA	False	NA	NA	NA	104360264	104224328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104358464_104358579_104360243
6125	chr12	+	3754	5	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	289.469342072697	2	101	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517334_86552623_86552700_86553122_86553285_86561054_86561325_86565594
6126	chr4	-	1797	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-31923	63754	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.834128686216	14	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025970	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146912762_146913745_146914016_146976977_146977116_146978205_146978333_146982168_146982279_147021745_147022236_147022273_147022474_147025871
6127	chr10	-	4511	13	FSM	ENSMUSG00000020228.12	ENSMUST00000020449.12	4554	13	36	7	36	-7	multi-exon	FALSE	canonical	3	54	junction_7	7.32006375199925	224	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATCGCCCAGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	119948856	119919519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_119920879_119925312_119925781_119927513_119927658_119928388_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063_119941943_119944790_119944961_119946737_119947134_119948589
6128	chr1	-	2206	13	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	1201	5777	770	0	3prime_fragment	FALSE	canonical	3	5903	junction_8	890.005816928556	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-82	True	NA	NA	NA	86285921	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828
6129	chr4	-	3151	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	686.996315492303	5	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	1	True	NA	NA	False	NA	NA	NA	43000434	42979962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982932_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
6130	chr1	-	3185	13	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-14	14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	625.426271300889	3	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCATTTCTTTGCCACAG	NA	False	NA	NA	False	NA	NA	NA	181669905	181642885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644386_181645032_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
6131	chr8	-	3409	5	NNC	ENSMUSG00000054408.10	novel	3466	5	NA	NA	39	-18	at_least_one_novel_splicesite	FALSE	non_canonical	3	952	junction_4	25.3808490795718	892	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGCATTTTAAAGACTT	NA	False	NA	NA	False	NA	NA	NA	54982994	54973485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_54976431_54977975_54978092_54979485_54979561_54981374_54981451_54982797
6132	chr12	+	4175	28	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-8	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	277.822134730034	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTGTTGAAACATAAACTG	7903	False	NA	NA	False	NA	NA	NA	76302063	76366580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76334731_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
6133	chr12	+	2810	26	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	45	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	272.124718465633	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGCTACCTTGGTGTT	7956	False	NA	NA	False	NA	NA	NA	76302116	76366567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76366483
6134	chr5	+	2189	1	Antisense	novelGene_ENSMUSG00000029405.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAGGCAAGATTCTC	NA	False	NA	NA	False	NA	NA	NA	92200018	92202207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92200000_92202200
6135	chr4	+	2507	6	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	43.2730863239497	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	147637744	147669653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661481_147661587_147665698_147665826_147667290_147668611_147668917
6136	chr4	-	3718	18	FSM	ENSMUSG00000028809.17	ENSMUST00000136342.9	3152	18	39	-605	-3	2	multi-exon	FALSE	canonical	3	663	junction_5	197.323579826916	5	89	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080516	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
6137	chr2	+	2796	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	-53	13	-11	-13	multi-exon	TRUE	canonical	3	1870	junction_1	194.730412606121	3420	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGCCTCGGTCCATTT	NA	False	NA	NA	False	NA	NA	NA	157120925	157168226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
6138	chrUn_JH584304v1	-	3186	4	Intergenic	novelGene_4652	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_2	254.511732975559	3	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACCATAGCTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	59716	52671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_55702_58563_58836_59591
6139	chr8	+	3051	15	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	424.666670003951	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTAAAGCTGTGTTTCT	8842	False	NA	NA	False	NA	NA	NA	120637567	120684290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321_120683559_120683757
6140	chr15	-	2589	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-22	297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1211.099741282	2	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGAGTTGAATTATGGC	NA	False	NA	NA	False	NA	NA	NA	11399709	11383793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11390649_11390805_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11393242_11393367_11394309_11394501_11397266_11397348_11399571
6141	chr10	+	2264	10	ISM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	4978	74	-245	-1	3prime_fragment	FALSE	canonical	3	966	junction_4	285.071920749835	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCTTCCCTGAGCCCT	642	False	NA	NA	False	NA	NA	NA	79695238	79700192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
6142	chr7	-	3290	22	Antisense	novelGene_ENSMUSG00000064451.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	42	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTGGAATAGTATATGGA	NA	False	NA	NA	False	NA	NA	NA	109655489	109628987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109629046_109630808_109630978_109636154_109636306_109638368_109638456_109639804_109639906_109640017_109640105_109641187_109641323_109641992_109642092_109643614_109643697_109643828_109643940_109645366_109645458_109645883_109646049_109646191_109646352_109647331_109647472_109648109_109648276_109648797_109648899_109649984_109650081_109650217_109650732_109651914_109652123_109653204_109653323_109654222_109654345_109655160
6144	chr5	+	4879	10	Intergenic	novelGene_764	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	8.73194786861711	125	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAGTTTGAATCGATGA	NA	False	NA	NA	False	NA	NA	NA	104719528	104792968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104719638_104737770_104737851_104783724_104783852_104784093_104784155_104785404_104785707_104785959_104786784_104786937_104787423_104787506_104788020_104789954_104790441_104791076
6145	chr9	-	5874	15	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	7	-2	intron_retention	FALSE	canonical	3	517	junction_5	118.483982384256	4	136	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAAGCCTGTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	108526561	108480147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
6146	chrX	-	4049	22	FSM	ENSMUSG00000025665.17	ENSMUST00000137712.9	2410	22	-51	-1588	39	0	multi-exon	FALSE	canonical	2	33	junction_21	75.5102672059551	398	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	False	NA	NA	False	NA	NA	NA	110372853	110297888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110372546
6148	chr9	-	1217	7	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGAGGAGGAGCCGGGGA	6965	False	NA	NA	False	NA	NA	NA	21305375	21279245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299093_21299403_21299447_21299817_21300049_21300600_21300780_21303590_21303737_21305004
6149	chr15	-	3027	9	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.592044995518	10	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033524	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016864_83019494_83019591_83021668_83021756_83022332_83022724_83033395
6150	chr1	-	2274	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	151	5777	115	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86286971	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
6151	chr12	+	2093	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	42	58	42	-58	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTGAACTTTCATGGCA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
6153	chr1	-	2400	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	26	5776	-10	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	49	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287096	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
6154	chr6	-	4919	20	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	20	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	169.269343956087	5	121	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCAAAATATTCAGTGT	9418	False	NA	NA	False	NA	NA	NA	82751415	82702015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82702548_82703066_82704291_82704335_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
6155	chr17	-	3199	14	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_11	514.328861250069	10	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGTGGCTTGCCTTTTT	5756	False	NA	NA	False	NA	NA	NA	33904377	33865214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
6156	chr11	+	4179	6	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_1	183.640518404844	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	NA	False	NA	NA	NA	45946882	46038170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45946908_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
6157	chr16	-	3081	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.566912506689	3	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCATAACTGTATCATTG	8113	False	NA	NA	False	NA	NA	NA	4867724	4831774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832633_4832844_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
6160	chr15	+	2635	17	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	17032	0	-5965	0	3prime_fragment	FALSE	canonical	3	1727	junction_9	134.625855962924	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	1202	False	NA	NA	False	NA	NA	NA	81773541	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
6161	chr12	+	3168	3	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	323.5	13	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517208_86561276_86561325_86565594
6162	chr18	+	3290	15	NNC	ENSMUSG00000003779.17	novel	3146	19	NA	NA	6	-2	intron_retention	FALSE	non_canonical	0	0	junction_7	291.246520518762	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTGGATTCCAAATTTA	6699	False	NA	NA	False	NA	NA	NA	34758509	34765855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761834_34761937_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
6163	chr13	+	2341	11	NNC	ENSMUSG00000021218.11	novel	600	3	NA	NA	-9	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	583.253838392856	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588435	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588805_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
6164	chr17	+	2988	17	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	444.655445085012	8	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4852	False	NA	NA	False	NA	NA	NA	87979948	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028354_88028457_88028487_88030758
6165	chr10	-	2683	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-220	20	-220	-20	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	104	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATAAATTTGGATTTGC	8472	False	NA	NA	False	NA	NA	NA	128402076	128393656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
6166	chr8	+	3306	15	NNC	ENSMUSG00000000303.13	novel	789	4	NA	NA	-28	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	417.347699215913	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5813	False	NA	NA	False	NA	NA	NA	107330746	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330834_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387459_107390938_107391056_107392025_107392157_107392818_107392963_107395037_107395511_107395824
6167	chr7	+	4371	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	170	3	-24	-3	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	799	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGCTTGTACTTTG	NA	False	NA	NA	False	NA	NA	NA	27291146	27340248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
6168	chr10	+	4088	18	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-14850	0	intron_retention	TRUE	canonical	3	44	junction_1	79.0900236054462	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	25259706	25399417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25259800_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
6170	chr4	-	2719	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	10	8	10	-8	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122779827	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
6171	chr19	-	2096	13	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTATGTACAAACCCCGC	NA	False	NA	NA	False	NA	NA	NA	38956712	38936035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38936141_38938629_38938827_38940276_38940374_38941984_38942147_38943067_38943273_38943355_38943490_38945471_38945560_38945639_38945760_38947487_38947605_38948111_38948273_38953040_38953136_38953848_38953927_38956175
6172	chrX	-	1558	11	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGCCCAGTGTGCCAG	NA	False	NA	NA	False	NA	NA	NA	20548945	20542188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
6175	chr17	+	2819	7	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-18	-2020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1536.75116362048	45	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCCAGTGGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	13226864	13237001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912_13235303_13235579_13236162_13236745
6176	chr7	+	3212	6	NNC	ENSMUSG00000045411.17	novel	3336	5	NA	NA	41	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	301.065707113912	1	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTAGGGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	43896282	43901734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896649_43896700_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
6178	chr2	-	3380	25	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	74.373867871869	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCCTGCAGTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	103591564	103551602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103588012_103588139_103591393
6179	chr3	+	3432	21	NNC	ENSMUSG00000028034.16	novel	4525	22	NA	NA	-2	-2	intron_retention	FALSE	non_canonical	0	0	junction_17	507.233898216592	6	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATGAGTGTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	151916116	151942461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933812_151933883_151937513_151937660_151940160_151940208_151941104
6181	chr19	-	3221	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-11	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	630.440423434285	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGAGTACTGGCTAACT	3855	False	NA	NA	False	NA	NA	NA	5345494	5323966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334744_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337558_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
6182	chr4	+	2980	4	NIC	ENSMUSG00000028405.10	novel	3832	21	NA	NA	-1538	-7	intron_retention	FALSE	canonical	3	270	junction_2	41.1204193666467	7	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACGTGTTGGCTTTG	4022	False	NA	NA	False	NA	NA	NA	40188991	40198331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40190885_40193738_40193862_40196244_40196431_40197553
6183	chrX	+	4553	28	NIC	ENSMUSG00000031010.18	novel	2772	17	NA	NA	616	6725	combination_of_known_junctions	FALSE	canonical	3	383	junction_13	101.08351271701	1	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGAAGTTCTTCTAAATA	1439	False	NA	NA	False	NA	NA	NA	12938368	13006746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648
6184	chr17	-	3746	17	NNC	ENSMUSG00000024039.16	novel	6226	17	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	91.6266200402481	38	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGTCGTGTCGACCTT	1946	False	NA	NA	False	NA	NA	NA	31856138	31831617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31837597_31837966_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
6185	chr13	+	5464	17	Antisense	novelGene_ENSMUSG00000021196.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	22	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGGCCCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	6642358	6698761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_6646095_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653500_6654991_6655117_6655670_6655765_6664739_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675252_6685964_6686037_6698608
6187	chr10	-	2610	17	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	12	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1183.48568854887	3	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCCCAAATACTCAGTG	NA	False	NA	NA	False	NA	NA	NA	86541361	86526716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528272_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540153_86540261_86541170
6189	chr2	+	4015	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	7	206	7	-206	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	130	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTGTATGAGTCGTGC	NA	False	NA	NA	False	NA	NA	NA	109721204	109731142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
6190	chr10	+	2740	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	-10	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	618.176192970544	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTGATCAAAAGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	41395486	41407031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667_41405569_41405660
6191	chrX	-	3332	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	458.298813514868	2	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGTGCCATGCCGT	NA	False	NA	NA	False	NA	NA	NA	23231302	23085522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23150798_23150912_23181368_23181441_23227732_23227824_23231194
6192	chr8	-	3521	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	90	182	0	-182	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	1	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTTACCGGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	80438279	80410272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
6193	chr3	+	3144	14	ISM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	-7	3587	0	-3579	5prime_fragment	FALSE	canonical	3	1060	junction_7	81.9770497541265	128	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTTTTGCATTCTTTCC	4849	False	NA	NA	False	NA	NA	NA	34074246	34119907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267
6196	chr19	+	3651	11	ISM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	65	0	14	0	intron_retention	FALSE	canonical	3	652	junction_7	53.2879911424704	783	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10160316	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852
6197	chr17	+	3681	4	NNC	ENSMUSG00000000579.15	novel	675	4	NA	NA	-21	2271	intron_retention	FALSE	non_canonical	0	0	junction_3	3502.9065074592	206	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTATTTTATGTAGCT	NA	False	NA	NA	False	NA	NA	NA	6869169	6879444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6869236_6870885_6870928_6874010_6877289_6879149
6200	chr13	-	5074	6	NNC	ENSMUSG00000021510.12	novel	9455	4	NA	NA	-9	28	intron_retention	TRUE	non_canonical	0	0	junction_1	13.5558105622644	45	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAGCCTATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	67785919	67765117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67767057_67767119_67767243_67767333_67769969_67771586_67771683_67772153_67772281_67785765
6202	chr1	-	2774	14	ISM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	49435	-1	-893	1	3prime_fragment	FALSE	canonical	3	2104	junction_10	250.191453318473	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGACGTCATTTCTTTTT	9954	False	NA	NA	False	NA	NA	NA	71642896	71624677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818
6203	chr3	+	4447	8	NIC	ENSMUSG00000027852.15	novel	1749	9	NA	NA	-6	3	intron_retention	FALSE	canonical	1	4	junction_3	376.85833423401	1	129	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965903	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102965946_102966220_102966349_102967254_102967351_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
6204	chr8	-	3872	26	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-5	-662	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	176.476427887693	1	84	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCCATTGCCAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	111573413	111537532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550792_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319_111569647_111571094_111571232_111573306
6205	chr15	-	2550	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	38	1417	-26	287	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	2982	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGGAGAAAACAGAGTT	NA	False	NA	NA	False	NA	NA	NA	11399713	11383803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
6206	chrX	-	3967	3	NNC	ENSMUSG00000051220.3	novel	5302	2	NA	NA	-11	-1241	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	124.5	11	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTTCCATTCATTTTC	NA	False	NA	NA	False	NA	NA	NA	101200708	101186562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101187561_101187665_101190440_101200513
6207	chr9	-	4563	15	NIC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	11	-173	intron_retention	FALSE	canonical	3	20	junction_10	55.4676316716813	5	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAAGACTTTATGGAGA	6389	False	NA	NA	False	NA	NA	NA	44272956	44259397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135
6209	chr4	-	1960	9	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	7.93725393319377	2	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTGAATATCCTAGGAG	NA	False	NA	NA	False	NA	NA	NA	145178212	145136977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145137000_145138758_145138851_145159020_145159132_145162612_145162681_145173283_145173343_145174457_145174577_145176035_145176685_145177100_145177357_145177628
6210	chr19	-	3917	21	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGGCCGGGACCCAGCTC	NA	False	NA	NA	False	NA	NA	NA	38957562	38919692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38919955_38923855_38923979_38926847_38926904_38928910_38928950_38929038_38929104_38930895_38930935_38932155_38932384_38933832_38934018_38935168_38935311_38938629_38938827_38940276_38940374_38941984_38942147_38943132_38943273_38943355_38943490_38945471_38945561_38945639_38945762_38947487_38947604_38948111_38948273_38953040_38953136_38953848_38953927_38956175
6211	chr10	+	2809	14	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	6	3	intron_retention	FALSE	canonical	3	61	junction_3	448.739694711163	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1567	False	NA	NA	False	NA	NA	NA	79690444	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694905_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
6213	SIRV7	-	2363	5	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1869.39540694311	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147918	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2556_3008_3112_3809_3897_114680_114989_147608
6214	chr9	-	4043	9	NIC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	10	0	intron_retention	FALSE	canonical	3	208	junction_3	16.1303285769385	230	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTATGGGATCCTTTCA	NA	False	NA	NA	False	NA	NA	NA	57744066	57697635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
6215	chr8	-	4226	25	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	5	-258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	294.101878488655	2	114	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTCCTGCGTGTGTAGT	NA	False	NA	NA	False	NA	NA	NA	111573414	111537128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552732_111552879_111560368_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568407_111568566_111569315_111569647_111571094_111571232_111573306
6216	chr19	+	3435	25	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	-5	-76	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	348.738119570641	1	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGGGTTCCCAACTGTG	1888	False	NA	NA	False	NA	NA	NA	8875459	8893960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891987_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988_8893621_8893912
6217	chr6	-	3274	14	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	-6	-511	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	258.951618702032	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACTGTCTACCTCCTGA	NA	False	NA	NA	False	NA	NA	NA	148113526	148081087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148083238_148083385_148083469_148084586_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
6219	chr6	-	3226	20	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	578	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_19	198.397346063922	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAAAGTACGGGGGCTG	9023	False	NA	NA	False	NA	NA	NA	124805280	124792002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124804977
6222	chr18	-	3832	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	19	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_30	563.067895315167	1	114	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCACCTTTGGGCCATGT	NA	False	NA	NA	False	NA	NA	NA	42395137	42335419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351746_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390139_42390260_42395025
6223	chr2	-	5071	17	NIC	ENSMUSG00000038914.16	novel	8723	16	NA	NA	-49	-3513	combination_of_known_junctions	FALSE	canonical	3	26	junction_15	46.571811149557	152	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACCTAGACTCAAGACAA	NA	False	NA	NA	False	NA	NA	NA	180351841	180303269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_180304377_180311183_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180332314_180332427_180333656_180333842_180351702
6224	chr2	+	4453	34	NNC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	-24	-1	intron_retention	FALSE	canonical	3	18	junction_33	59.8920516532843	1	91	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	NA	False	NA	NA	False	NA	NA	NA	180961507	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997690
6226	chr4	-	347	3	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	49	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	660	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGATGGTGAGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	137523646	137482949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137483029_137485869_137486044_137523552
6227	chr5	+	3572	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	226	-6	16	0	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	18	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121385	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
6228	chr2	-	4117	14	NNC	ENSMUSG00000027104.19	novel	2396	14	NA	NA	200	2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_13	84.7325063546222	1	66	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722674	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722620
6229	chr16	-	3528	6	NIC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-3	-9	intron_retention	FALSE	canonical	3	2208	junction_2	229.870050245786	17	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTAAAGTCGCTGTACT	1018	False	NA	NA	False	NA	NA	NA	11021131	11010842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_11011602_11012323_11012576_11014137_11014431_11017248_11017351_11017434_11017584_11019158
6230	chr2	-	2263	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-30	-30	intron_retention	FALSE	non_canonical	0	0	junction_5	4275.98701873322	29	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAAGCAAGGATCAGTG	3706	False	NA	NA	False	NA	NA	NA	154734781	154713367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720413_154726325_154726367_154729623_154729728_154730102_154730281_154734609
6231	chr1	+	3091	13	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	-14	-528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	368.084304956834	7	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTAGTCCTCTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	93406728	93437454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434690_93434777_93435517
6232	chr6	+	2657	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	267.552229584348	1653	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5403	False	NA	NA	False	NA	NA	NA	125108837	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108993_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
6233	chr2	+	7470	43	NNC	ENSMUSG00000057110.16	novel	7615	44	NA	NA	1935	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	35.4247949856205	1	165	13	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATGAAAATAAAGGTACAG	NA	False	NA	NA	False	NA	NA	NA	35001565	35068797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316_35017543_35017939_35018050_35019632_35019828_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037243_35037424_35038502_35038620_35038882_35039028_35039457_35039607_35041691_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050504_35050674_35050802_35050930_35051940_35052106_35052772_35052933_35055458_35055575_35055659_35055878_35057742_35057901_35059253_35059328_35060469_35060660_35061032_35061259_35061849_35062056_35063028_35063170_35065120_35065385_35065549_35065613_35066139_35066335_35068050_35068123_35068408
6234	chr7	-	1491	10	NIC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	29	0	intron_retention	FALSE	canonical	3	2113	junction_4	111.139329750021	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTAATTTCTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	27749444	27741140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27741346_27741525_27741582_27741763_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
6235	chr2	+	2711	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-13	0	intron_retention	FALSE	canonical	3	433	junction_10	618.436253788537	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	130116336	130121227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119545_130119768_130119891_130120075_130120211_130120332
6236	chr6	-	2740	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	-71	28	-71	-6	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	91	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTTGTCTCATGACT	NA	False	NA	NA	False	NA	NA	NA	148848036	148822560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
6237	chr17	+	2556	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-29	162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.651197463019	29	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGAGTATGCTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	17284345	17310052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284419_17305782_17305910_17306151_17306213_17307505_17308923_17309174
6238	chr6	+	3276	23	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-34	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.757860907129	6	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTACTGTCGTGGTGGAG	-6	True	NA	NA	False	NA	NA	NA	28480393	28888820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480644_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
6239	chr1	-	3442	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	35	33	17	-12	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	1	93	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTGGTTGGAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	181669909	181642932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
6240	chr4	+	5778	8	NNC	ENSMUSG00000059939.14	novel	2937	8	NA	NA	-1	-4	intron_retention	FALSE	canonical	1	9	junction_3	83.6999012507647	11	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGAGTTGTTGAGGTCAT	8257	False	NA	NA	False	NA	NA	NA	156194440	156211716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194481_156198345_156198459_156201152_156201306_156201466_156201561_156203620_156206874_156207991_156208127_156208432_156208580_156209873
6241	chr6	-	2727	8	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_7	284.90943781332	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72416328
6242	chr7	-	2998	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	15	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	518.074665830129	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTCATCTGCCTCTGT	NA	False	NA	NA	False	NA	NA	NA	33867985	33840127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33864330_33864826_33864911_33867797
6244	chr15	-	3419	9	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-29	-83	intron_retention	FALSE	canonical	0	0	junction_3	2007.53380653353	1	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	31601915	31591028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31592612_31592791_31592930_31593012_31593774_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
6245	chrUn_JH584304v1	+	2880	5	Intergenic	novelGene_4640	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTATGTAACCACGCCCT	NA	False	NA	-52	True	NA	NA	NA	52668	59011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_54478_54718_54868_55111_55252_55368_55704_58564
6246	chr17	+	6024	4	Intergenic	novelGene_72	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGAGCAGCTCTCTTAG	NA	False	NA	NA	False	NA	NA	NA	22929423	22958873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_22935000_22935788_22935918_22937257_22937338_22958634
6247	chr10	+	2462	10	ISM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	4458	-76	132	3	3prime_fragment	FALSE	canonical	3	638	junction_4	318.32470416848	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	363	False	NA	NA	False	NA	NA	NA	79694959	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
6248	chr13	+	4070	8	NNC	ENSMUSG00000074794.11	novel	4101	8	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	70.846773434804	301	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGGCAGTTTATTTGA	NA	False	NA	NA	False	NA	NA	NA	81031530	81044161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_81032049_81035524_81035607_81037207_81037327_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
6249	chr14	+	4643	20	ISM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	-368	720	-368	-720	5prime_fragment	FALSE	canonical	3	1309	junction_14	130.543589688901	1	180	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTCTATCAAAGTGCATC	NA	False	NA	NA	False	NA	NA	NA	19800964	19861135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021
6250	chr10	+	2574	13	NNC	ENSMUSG00000019970.16	novel	2602	12	NA	NA	-19	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	314.939235761793	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTGCATAAATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	21854551	21875789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873850_21873888_21873953_21874058_21874149_21874558
6251	chr2	+	3559	14	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.7213155719746	531	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121340313	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374114_121374761
6252	chr12	+	4233	14	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	-1680	-1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	398.125221893429	21	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCGCTCTATGAAACTAAAT	3240	False	NA	NA	False	NA	NA	NA	110450491	110549495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110450715_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110541178_110541296_110546834
6253	chr17	+	2360	14	NIC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-32	0	intron_retention	FALSE	canonical	3	1213	junction_1	77.9745065302696	260	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165716	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
6254	chr12	+	2894	7	NIC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	3	-140	intron_retention	FALSE	canonical	2	13	junction_2	796.056670232856	28	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTCTAAATTTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	80992310	80997131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992573_80993349_80993495_80993889_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
6256	chr17	+	2787	8	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	6	-1024	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1010.60949482004	2	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAGTGTGTGCAGGCAA	NA	False	NA	NA	False	NA	NA	NA	35460786	35471628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35468549_35470355_35471550
6257	chr18	-	2947	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_9	2001.34386483336	1	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGCTGACTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	64649570	64632719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643597_64644677_64644772_64644855_64644949_64645054_64645121_64647885_64647936_64648396_64648480_64649486
6258	chr1	-	2155	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2065.09556376939	45	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCCTAGAGGTTACATT	NA	False	NA	NA	False	NA	NA	NA	86287096	86278204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278386_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
6259	chr15	-	2528	17	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-14	345	intron_retention	FALSE	canonical	0	0	junction_9	799.375535085826	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	NA	False	NA	NA	False	NA	NA	NA	11399701	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388547_11389661_11389829_11390397_11390497_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
6260	chr11	+	4214	22	NIC	ENSMUSG00000017119.21	novel	4339	23	NA	NA	5	-5	intron_retention	FALSE	canonical	3	41	junction_21	53.0816766793681	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCAAGCTGTTTATTG	992	False	NA	NA	False	NA	NA	NA	101443697	101472772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
6261	chr6	+	4844	23	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-7	-16	combination_of_known_splicesites	FALSE	canonical	2	3	junction_22	93.5517821872637	13	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTTGTATTTCACACC	1694	False	NA	NA	False	NA	NA	NA	65019559	65093029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65091284
6262	chrX	+	771	6	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	17903	590	206	384	3prime_fragment	FALSE	canonical	3	3123	junction_1	321.766126246999	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGTCCATGTAGCCAAGC	NA	False	NA	NA	False	NA	NA	NA	20547039	20548828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
6263	chr6	-	2863	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705254_122706108_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
6265	chr2	+	4343	5	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-23	-3	intron_retention	FALSE	canonical	3	1115	junction_3	110.150748976119	2	119	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTGTGTTTATTTTTG	8640	False	NA	NA	False	NA	NA	NA	72306573	72317234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72314361_72314942
6266	chr10	+	2791	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	6	2	intron_retention	FALSE	non_canonical	0	0	junction_1	582.682807741802	3	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1567	False	NA	NA	False	NA	NA	NA	79690444	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690552_79694553_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699871_79699931
6267	chr7	+	4521	29	NNC	ENSMUSG00000042055.14	novel	4550	29	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	35.0779561862444	252	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCCAAGACTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	129193604	129237451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235456_129236543
6269	chr13	+	3939	31	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	18	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	546.81444039292	1	102	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCTCTTAGATACTGTGT	NA	False	NA	NA	False	NA	NA	NA	49840886	49887726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859353_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878091_49878269_49878696_49878810_49879634_49879731_49880602_49880769_49884984_49885038_49885815_49885969_49887134
6270	chr9	-	3572	20	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	3	intron_retention	FALSE	canonical	3	131	junction_5	39.440266556386	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854019	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844818_61851484_61851614_61852631_61852702_61853893
6271	chr10	+	2732	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	717	junction_1	85.0388734638459	397	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTTGCATAAATTGTGT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
6272	chr1	+	3816	22	NNC	ENSMUSG00000026288.15	novel	3942	23	NA	NA	36	-67	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	159.219695906712	1	100	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGGAGAGTAGGTATAT	9406	False	NA	NA	False	NA	NA	NA	87603996	87648157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609302_87611414_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640925_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
6273	chr17	+	2171	12	NNC	ENSMUSG00000068039.14	novel	768	4	NA	NA	537	-102	at_least_one_novel_splicesite	TRUE	canonical	1	8	junction_1	1034.27167650789	1	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTCCTGGGTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	13135898	13143852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135974_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
6274	chr19	+	3469	23	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	713.623948936601	1	95	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	630	False	NA	NA	False	NA	NA	NA	10582950	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604056_10606597
6275	chrX	+	4849	30	NNC	ENSMUSG00000000037.18	novel	1257	12	NA	NA	-20	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	118.433643627666	1	116	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGCAATTAACAGCTAAG	158	False	NA	NA	False	NA	NA	NA	159865500	160041195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159865683_159869958_159870037_159878108_159878187_159904024_159904098_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998177_159998260_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
6276	chr8	-	3148	17	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-20	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	631.387744872357	4	71	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATTATCTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	86026118	85987018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000120_86000257_86001448_86001680_86005332_86005477_86005588_86005686_86007864_86007975_86008482_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
6278	chr1	-	2333	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	92	5777	56	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287030	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
6279	chr7	-	3304	22	NNC	ENSMUSG00000030754.10	novel	3346	22	NA	NA	327	-2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_21	106.04183489689	789	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGTATCTGTGGGATTT	NA	False	NA	NA	False	NA	NA	NA	113853599	113814795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853533
6281	chr15	-	2928	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-6	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	972.418891219211	4	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGTTGTATGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	38300956	38294649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296409_38296858_38297772_38297865_38297898_38298026_38298097_38300802
6282	chr9	+	2838	23	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	3	0	intron_retention	FALSE	canonical	3	468	junction_2	38.846487444515	807	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108384934	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
6283	chr9	+	3799	13	NNC	ENSMUSG00000032193.10	novel	4627	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	96.1754761996125	2	19	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCATCCTTATGTGTG	1929	False	NA	NA	False	NA	NA	NA	21634934	21661215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645158_21650939_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
6284	chr5	-	2265	14	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-61	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	589.976381033609	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCTGTAGAGTTTTTAG	2259	False	NA	NA	False	NA	NA	NA	138170141	138162848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
6285	chr15	-	3945	15	NIC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-15	3	intron_retention	FALSE	canonical	3	15	junction_5	5.08097692679392	22	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6979	False	NA	NA	False	NA	NA	NA	98560790	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
6286	chr10	+	3058	11	NIC	ENSMUSG00000019970.16	novel	2602	12	NA	NA	2	-2	intron_retention	FALSE	canonical	3	251	junction_1	217.665086773235	7	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAATTGTGTCATGTGT	NA	False	NA	NA	False	NA	NA	NA	21854572	21875795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873953_21874058_21874149_21874558
6287	chr7	-	5121	27	FSM	ENSMUSG00000045659.19	ENSMUST00000181998.8	5149	27	28	0	7	0	multi-exon	FALSE	canonical	3	186	junction_4	26.6807778245958	217	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTGTCCTGGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	115907583	115722727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_115724056_115727788_115727929_115728626_115728761_115731855_115732012_115734273_115734475_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
6288	chrX	+	4557	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14669	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	109.448479203687	2	124	16	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTTGGATGTTATTTT	4700	False	NA	NA	False	NA	NA	NA	159921932	160041211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922031_159927671_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
6289	chr8	+	4457	22	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	0	-695	intron_retention	FALSE	canonical	3	158	junction_6	31.4873908463837	33	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTCACCCAGTGCACTA	NA	False	NA	NA	False	NA	NA	NA	85809943	85824216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
6290	chr17	+	3363	21	Antisense	novelGene_ENSMUSG00000077931.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	53	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCGGCGCCCGGCGCCG	NA	False	NA	NA	False	NA	NA	NA	36267715	36280631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36268482_36268570_36268646_36268734_36268796_36268961_36269137_36269219_36269250_36269960_36270032_36270120_36270193_36270324_36270613_36270759_36270881_36271000_36271085_36271465_36271844_36271928_36272117_36272585_36272717_36272879_36272979_36274019_36274129_36274212_36274284_36274459_36274688_36274808_36274939_36275145_36275227_36275904_36276016_36280537
6291	chr7	+	2849	20	Antisense	novelGene_ENSMUSG00000084453.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGCTGAGGCGCTCGCG	NA	False	NA	NA	False	NA	NA	NA	126146082	126165363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126146253_126146356_126146519_126146605_126146692_126146772_126146846_126146942_126147103_126151150_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156672_126156857_126156992_126157792_126157903_126158016_126158185_126161736_126161865_126162176_126162286_126162416_126162470_126162798_126162925_126163587_126163782_126163876_126163943_126165251
6293	chr6	+	3183	25	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	2	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	145.883366417225	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGCCTTACTGTCGTG	6	True	NA	NA	False	NA	NA	NA	28480359	28888814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233_28888376_28888644
6294	chr11	+	4998	20	FSM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	-39	-2309	-39	-5	multi-exon	FALSE	canonical	3	209	junction_9	44.9846388062843	428	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATGCCAGAGTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	4587707	4635694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
6296	chr2	+	3271	4	NIC	ENSMUSG00000078906.10	novel	919	4	NA	NA	3018	1847	combination_of_known_junctions	FALSE	canonical	3	515	junction_3	284.818460700067	323	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAACAGAAATATCTGTG	NA	False	NA	NA	False	NA	NA	NA	174855129	174862888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174855276_174858430_174858558_174858749_174858811_174859951
6297	chr5	+	2820	13	NIC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-22	intron_retention	FALSE	canonical	3	3740	junction_10	456.144713879269	20	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAAGCTACTGGATCA	NA	False	NA	NA	False	NA	NA	NA	129864436	129875190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129864640_129865297_129865362_129866116_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
6298	chr18	-	3679	31	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	-4	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	815.564290673778	2	98	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTTTTTCACCTTTGGG	NA	False	NA	NA	False	NA	NA	NA	42395160	42335425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335765_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347944_42349961_42350028_42350532_42350674_42351568_42351710_42352922_42353000_42354539_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369643_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376092_42376841_42376951_42377821_42377976_42379004_42379143_42384337_42384446_42390134_42390260_42395025
6299	chr5	+	5536	7	FSM	ENSMUSG00000005374.14	ENSMUST00000153183.8	7488	7	34	1918	0	-1918	multi-exon	FALSE	canonical	3	208	junction_3	17.4610678049451	251	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTAATAAAAGCCCATATG	9524	False	NA	NA	False	NA	NA	NA	135178544	135192696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135185221_135185374_135186385_135186513_135187457_135187611_135188073
6300	chr15	+	3314	20	FSM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	-14	-1	3	1	multi-exon	TRUE	canonical	1	369	junction_14	161.21684095061	1123	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTTGATCCTCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	89239924	89257030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
6302	chr6	-	3405	10	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-1	-4	intron_retention	TRUE	non_canonical	0	0	junction_1	3269.57832823201	2	121	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATAAAATAAATACTTTTG	NA	False	NA	NA	False	NA	NA	NA	51446828	51438128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440425_51441079_51441192_51441411_51441528_51442158_51442222_51443121_51443203_51443294_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
6303	chr8	-	3230	19	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.311849531882	2	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTTTTGACTTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	80438304	80410088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80410667_80411166_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
6304	chr8	-	4311	30	FSM	ENSMUSG00000038102.16	ENSMUST00000039061.15	4332	30	8	13	8	0	multi-exon	TRUE	canonical	3	87	junction_18	20.4181612288351	189	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTCGTAAATACCTTT	4062	False	NA	NA	False	NA	NA	NA	47986494	47943162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
6305	chr15	-	2959	11	NIC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-110	1	combination_of_known_splicesites	FALSE	canonical	3	103	junction_2	742.189086419357	13	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283905	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81249780_81250547_81250691_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
6306	chrX	+	2130	17	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	7393	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	858.210945714252	8	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20536529	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20537950_20541852_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
6307	chr6	-	4277	30	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	34	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	193.051704890164	1	118	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3429	False	NA	NA	False	NA	NA	NA	125168630	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148607_125149993_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151318_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156370_125156605_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
6308	chr11	-	1826	5	Antisense	novelGene_ENSMUSG00000018583.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGGAGGAAGGTTCTTAC	7621	False	NA	NA	False	NA	NA	NA	55391702	55387014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_55387070_55388474_55388589_55388738_55388868_55389383_55389492_55390282
6310	chr7	-	1067	5	ISM	ENSMUSG00000010751.16	ENSMUST00000084396.4	564	6	21	88	21	-88	5prime_fragment	FALSE	canonical	3	105	junction_3	24.963723680573	10	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCTGTTACAATATGTCT	NA	False	NA	NA	False	NA	NA	NA	143203368	143193082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
6312	chr4	-	2774	18	NIC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	13	0	intron_retention	FALSE	canonical	3	663	junction_7	52.3575014537316	1045	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120427460	120397064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
6313	chr2	-	2754	6	Antisense	novelGene_ENSMUSG00000026864.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	335	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGCGCCGTCGCCGACTC	NA	False	NA	NA	False	NA	NA	NA	34666468	34662103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_34662456_34662567_34662801_34663179_34663318_34663830_34664782_34665074_34665244_34665557
6315	chr11	-	4503	12	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	2240	junction_1	252.900039051136	1	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5943	False	NA	NA	False	NA	NA	NA	100510433	100473643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100482392_100483680_100483800_100486991_100489555_100490010_100490136_100492553_100492643_100510353
6316	chr10	-	2008	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	58	223	0	-223	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	49	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCGCCCTCCTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	127358255	127353230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
6317	chr17	+	3816	4	NIC	ENSMUSG00000096255.3	novel	771	5	NA	NA	59	18	intron_retention	FALSE	canonical	3	3024	junction_1	2735.10962607839	323	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGGAGCATCACCCGAGA	NA	False	NA	NA	False	NA	NA	NA	6697569	6703713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_6697638_6699278_6702531_6702868_6702947_6703295
6318	chr15	-	2930	17	FSM	ENSMUSG00000022391.17	ENSMUST00000170134.9	2984	17	21	33	0	-28	multi-exon	FALSE	canonical	3	7	junction_16	270.05335121046	121	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATAAACGTCATCTGTG	NA	False	NA	NA	False	NA	NA	NA	81614081	81588481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613417_81613466_81613912
6319	chrX	+	2244	10	ISM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	7704	0	-5332	0	3prime_fragment	FALSE	canonical	3	3075	junction_2	267.857249617851	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100480864	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
6320	chr11	-	3108	19	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-10493	-851	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	151.244426486432	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATACTGGGTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	79863709	79825629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834216_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79863433
6321	chrX	+	3263	22	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	65	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	315.616877884314	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799488	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799628_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811128_150812277_150812314_150816706_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843982_150844042_150844288_150844400_150844721
6322	chr11	-	3408	12	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1215.43430322438	1	124	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTCTTCATTTATTTATT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677124_106677687_106677901_106679098
6323	chr13	+	1170	1	Antisense	novelGene_ENSMUSG00000045136.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGAGTGGGTCAGCTGG	NA	False	NA	NA	False	NA	NA	NA	34311203	34312373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34311200_34312400
6324	chr13	-	4340	5	Antisense	novelGene_ENSMUSG00000021395.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	301	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAGCATCAAGACAGC	NA	False	NA	NA	False	NA	NA	NA	51306595	51277119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_51277323_51281958_51282008_51293390_51293646_51298336_51298570_51302995
6325	chr15	+	4646	4	ISM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	-21	-6	-21	0	intron_retention	FALSE	canonical	3	16	junction_1	37.8505834389203	309	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	NA	NA	NA	76763487	76776595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430
6327	chrX	-	1353	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	6	-245	2	245	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	1207	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTGTTGCTGCCAGAGC	NA	False	NA	NA	False	NA	NA	NA	100266153	100141146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
6329	chr10	+	3645	13	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-32	680	intron_retention	FALSE	canonical	0	0	junction_1	97.8503321404685	12	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGCCAGGAACCTGGAG	NA	False	NA	NA	False	NA	NA	NA	75399949	75422714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75421120_75421220_75421334_75421424_75421539_75421714
6330	chr1	-	2718	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	-156	3	4	-3	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	2515	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGATGGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	125363440	125320645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
6331	chr12	+	4211	19	NIC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	13	-3	combination_of_known_junctions	FALSE	canonical	3	4	junction_5	177.705401934053	3	22	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATAATTGTGTAGTGCAT	3999	False	NA	NA	False	NA	NA	NA	83679043	83729894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
6332	chr16	+	3199	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGACTACTGTGTTGAATT	NA	False	NA	NA	False	NA	NA	NA	13598578	13632700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631505_13631882
6333	chr5	+	3919	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	10	0	10	0	multi-exon	FALSE	canonical	3	312	junction_1	122	530	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4901	False	NA	NA	False	NA	NA	NA	105848664	105963076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_105848952_105880095_105880241_105959589
6334	chr17	+	4922	31	NNC	ENSMUSG00000067150.7	novel	5081	32	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	96.3584742280385	5	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGCCCTATTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	46513746	46554524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46513952_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546927_46547835_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
6335	chr19	-	1094	1	Antisense	novelGene_ENSMUSG00000071644.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCATGGTGATTCCGCAGA	NA	False	NA	NA	False	NA	NA	NA	8945677	8944583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8944600_8945700
6336	chr6	-	2845	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3146.05946364024	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTACTTGGTGTAATGC	NA	False	NA	NA	False	NA	NA	NA	51446821	51438104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51440235_51440390_51440474_51441068_51441192_51441407_51441540_51442178_51442222_51443121_51443203_51443282_51443385_51443474_51443683_51443885_51444036_51444167_51444276_51446650
6337	chr7	-	311	3	FSM	ENSMUSG00000043866.12	ENSMUST00000146999.2	456	3	140	5	140	-5	multi-exon	FALSE	canonical	3	1257	junction_1	56	67	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATTGTGACAGGCGGG	7330	False	NA	NA	False	NA	NA	NA	105392677	105392117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105392271_105392432_105392548_105392634
6338	chr1	+	3137	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	19	238	-6	-238	multi-exon	FALSE	canonical	3	212	junction_6	847.519796556727	382	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCAGGCTGTGGACTTG	NA	False	NA	NA	False	NA	NA	NA	87141654	87167972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
6339	chr1	-	4073	7	NIC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	-1	-642	combination_of_known_splicesites	FALSE	canonical	3	21	junction_4	137.596834588914	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATGTCGGTCTGCCCTGC	8717	False	NA	NA	False	NA	NA	NA	88205229	88190834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88202763_88202820_88204940_88205008_88205095
6340	chr5	+	2819	4	NNC	ENSMUSG00000029267.18	novel	706	4	NA	NA	-3886	-2	intron_retention	TRUE	canonical	0	0	junction_1	194.690067086696	6	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCTAATGAGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	108209653	108256868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108209850_108221172_108221321_108228690_108228894_108254596
6341	chr14	+	2929	14	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	4	-17	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	474.85536882484	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACCAAAGGACTAACCA	NA	False	NA	NA	False	NA	NA	NA	45567296	45587145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45577322_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
6342	chr18	-	2127	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	150	410	-21	145	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	3	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTTCCTTATTCATAT	NA	False	NA	NA	False	NA	NA	NA	64649529	64633138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
6343	chr5	-	3274	17	FSM	ENSMUSG00000029657.16	ENSMUST00000074846.14	3240	17	-32	-2	-32	2	multi-exon	FALSE	canonical	3	9	junction_6	344.38590613402	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGGCTTTGTCTCCGA	NA	False	NA	NA	False	NA	NA	NA	149559706	149540307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
6344	chr5	-	2247	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	543	172	-61	-155	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAATACTTCTCGGACACG	2259	False	NA	NA	False	NA	NA	NA	138170141	138163016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
6345	chrX	+	6482	28	ISM	ENSMUSG00000037369.18	ENSMUST00000044484.13	5918	29	92	423	19	-423	intron_retention	FALSE	canonical	3	111	junction_13	33.0146909976987	10	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGAGTTTTCTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	18028905	18145752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614
6346	chr6	-	2935	14	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	1	-24	intron_retention	FALSE	non_canonical	0	0	junction_1	362.808244786701	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9173	False	NA	NA	False	NA	NA	NA	88495809	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88481062_88481147_88481764_88481812_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
6347	chr13	-	5537	21	ISM	ENSMUSG00000021374.11	ENSMUST00000021803.10	6109	22	10615	-7	-58	7	3prime_fragment	TRUE	canonical	3	242	junction_11	31.2622376038568	355	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTGTTTGTACTTCT	NA	False	NA	NA	False	NA	NA	NA	46870801	46833373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_46834719_46834999_46835169_46836472_46836746_46837358_46837713_46840098_46840975_46842534_46842727_46846987_46847594_46850121_46850245_46853124_46853210_46854464_46854564_46855079_46855215_46858115_46858243_46858644_46858692_46861222_46861370_46863104_46863159_46863241_46863287_46863387_46863505_46866108_46866238_46866316_46866457_46867096_46867346_46870576
6348	chr10	+	2939	10	ISM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	20	13	3	-1	intron_retention	FALSE	canonical	3	717	junction_1	88.1828907567801	10	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTGCATAAATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	21870584	21875789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796
6349	chr12	+	3048	2	ISM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	44187	-2556	9895	-4	3prime_fragment	FALSE	canonical	3	647	junction_1	0	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGAGTCGTTCATGCGT	NA	False	NA	NA	False	NA	NA	NA	86561077	86568395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_86561325_86565594
6350	chr5	+	2437	12	NIC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	416	-14	intron_retention	FALSE	canonical	3	3618	junction_3	487.253052520025	10	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864477	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
6352	SIRV7	-	2421	6	NNC	SIRV7A	novel	2462	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1670.53363929015	53	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	147923	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608_147750_147788
6353	chr5	-	2333	16	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-64	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	554.669567300108	9	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCTGTAGAGTTTTTAG	2256	False	NA	NA	False	NA	NA	NA	138170144	138162848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165408_138165492_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
6355	chr17	+	3525	19	NIC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_11	493.967188518968	1795	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGTCTCGTGGTGTATA	NA	False	NA	NA	False	NA	NA	NA	71923223	71966026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71950142_71950232_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
6357	chr9	-	3129	23	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	3	50	junction_16	70.2958329649162	525	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854054	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
6358	chr3	+	3534	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	32	-409	-30	409	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	815	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAGCCAATACTTAACT	NA	False	NA	NA	False	NA	NA	NA	58484088	58500963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
6359	chr11	-	2703	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	11	2363	-3	-179	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGAGGTGGCACTGGGAC	NA	False	NA	NA	False	NA	NA	NA	75239139	75191354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
6361	chr11	-	4615	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	19	6	-8	-6	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	272	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTTGGAATTCATTT	NA	False	NA	NA	False	NA	NA	NA	8961172	8943142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
6363	chr2	-	4879	35	FSM	ENSMUSG00000040383.17	ENSMUST00000043160.13	4888	35	6	3	5	-3	multi-exon	FALSE	canonical	3	207	junction_21	28.9958832539162	681	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTAAGGCATACTTGCC	7815	False	NA	NA	False	NA	NA	NA	114005814	113931653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_113932211_113934484_113934599_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
6365	chr8	+	3671	19	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	3001	-2095	intron_retention	FALSE	non_canonical	0	0	junction_15	781.986714862997	2	116	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111763548	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779137_111779815_111779937_111780520_111780641_111780756_111780844_111781140
6369	chr18	+	2794	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	53	18	2	-18	multi-exon	FALSE	canonical	3	1498	junction_1	106	2938	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGACTTAGAGAAATATC	NA	False	NA	NA	False	NA	NA	NA	46730823	46743260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
6370	chr6	+	3927	22	NNC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	3	-5303	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	80.5554976933094	1	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGAAAAGGAAGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	83891358	83953516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924798_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183
6371	chr10	+	2824	10	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	634.945861403616	1	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	False	NA	NA	False	NA	NA	NA	128173613	128198348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128186269_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195152_128195357_128195405_128195812_128196023_128196836
6372	chr4	-	3004	14	NIC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	1	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	363.362159795978	3	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCCCTTGTTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	116484693	116458250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
6373	chr4	-	2715	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	279	4483	14	-2	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	10	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTTTGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	148711197	148701321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
6374	chr1	+	5167	11	NIC	ENSMUSG00000026554.16	novel	2754	14	NA	NA	-16	0	intron_retention	FALSE	canonical	3	418	junction_1	55.2511538341056	8	94	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	171975634	172023033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172016637_172020084_172020205_172021351_172021469_172022122
6375	chr1	-	3173	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	-15	2	-15	-2	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	1005	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGTTATTAGATGTGTA	NA	False	NA	NA	False	NA	NA	NA	151376721	151345158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
6376	chr14	-	6652	22	NIC	ENSMUSG00000034235.18	novel	6580	21	NA	NA	94	-5	combination_of_known_junctions	TRUE	canonical	2	10	junction_12	21.0907766968883	113	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATCTCTTGTCTTTTAC	NA	False	NA	NA	False	NA	NA	NA	20691037	20598984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913_20612311_20614935_20615132_20616010_20616131_20620315_20620484_20623835_20623970_20626540_20626773_20627002_20627381_20627522_20627655_20631524_20631696_20633389_20633559_20636067_20636218_20638142_20638290_20638400_20638507_20639251_20639335_20639441_20639556_20641546_20641682_20654119_20654213_20657149_20657974_20690984
6379	chr11	-	6140	13	FSM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	309	14	309	-14	multi-exon	TRUE	canonical	3	360	junction_12	22.6180544894756	377	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCGTAGTGTATGCTTC	NA	False	NA	NA	False	NA	NA	NA	85125647	85078101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
6380	chr9	-	5861	1	NIC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	5839	114	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGTCACGAACAACAGGT	NA	False	NA	NA	False	NA	NA	NA	58131571	58125710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_58125700_58131600
6382	chr10	-	3316	28	FSM	ENSMUSG00000052798.14	ENSMUST00000064848.7	3114	28	-80	-122	-80	122	multi-exon	FALSE	canonical	3	716	junction_19	68.4831139760951	1017	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAATTTCGTTTATCATA	NA	False	NA	NA	False	NA	NA	NA	117628690	117586403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
6383	chr10	+	585	1	NIC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	-196	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGAGACTATGCGGCGCA	NA	False	NA	NA	False	NA	NA	NA	127919174	127919759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127919200_127919800
6384	chr4	+	3674	14	Antisense	novelGene_ENSMUSG00000028693.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.266469355010597	3	98	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGACCCCGCGCGGTT	9573	False	NA	NA	False	NA	NA	NA	116458254	116484687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_116458990_116459287_116459418_116459922_116460001_116460084_116460146_116461094_116461259_116461359_116461552_116461940_116462003_116462097_116462192_116462880_116462957_116467595_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
6385	chr14	+	3354	25	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	115.12775964843	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56640136	56726892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
6386	chr2	-	4853	35	FSM	ENSMUSG00000040383.17	ENSMUST00000043160.13	4888	35	33	2	-29	-2	multi-exon	FALSE	canonical	3	207	junction_21	28.9958832539162	144	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTAAGGCATACTTGCCC	7842	False	NA	NA	False	NA	NA	NA	114005787	113931652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_113932211_113934484_113934599_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
6387	chr11	+	2487	2	ISM	ENSMUSG00000020372.16_ENSMUSG00000064780.3	ENSMUST00000136703.2	766	3	-21	-1262	-4	723	intron_retention	FALSE	canonical	3	6565	junction_1	0	70	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTCCAGATGGATCCCT	NA	False	NA	NA	False	NA	NA	NA	48691179	48694756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48691400_48692489
6391	chr7	-	2623	18	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	120	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	595.941370981289	2	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGATGTCTGCATACT	NA	False	NA	NA	False	NA	NA	NA	33867880	33840143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33865979_33866175_33867797
6392	chr6	-	3626	18	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	15	-1	intron_retention	FALSE	non_canonical	0	0	junction_17	209.246249857876	5	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGTACGGGGGCTGA	7947	False	NA	NA	False	NA	NA	NA	124806356	124792001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794995_124795506_124795630_124796335_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803381_124806247
6393	chr3	-	2856	1	Antisense	novelGene_ENSMUSG00000105176.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGACAATGGACTTT	NA	False	NA	NA	False	NA	NA	NA	34130079	34127223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_34127200_34130100
6394	chr6	-	2331	10	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	129	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1291.89637622898	4	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGGATTTGAATCTTAA	8614	False	NA	NA	False	NA	NA	NA	145021781	144944879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953469_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
6395	chr15	-	3159	8	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	77	85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1813.63129929871	4	86	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTTTTGGACAGATTA	NA	False	NA	NA	False	NA	NA	NA	36794698	36770928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36790974_36791103_36791233_36793722_36793920_36794388
6396	chr17	-	4152	12	NIC	ENSMUSG00000024045.7	novel	4570	14	NA	NA	4	-11	intron_retention	FALSE	canonical	3	68	junction_6	153.255471906949	4	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTAATTGTTAAGTCCT	NA	False	NA	NA	False	NA	NA	NA	32540129	32523981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32532237_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32536853_32537744_32537784_32540058
6397	chr15	-	2900	10	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-110	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1064.55260410821	1	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGATCTTGACCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	81283905	81247874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267236_81273851_81273964_81283685
6398	chr8	-	4125	24	FSM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	541	1447	469	-1447	multi-exon	FALSE	canonical	3	1231	junction_15	129.150386396008	797	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCTTAAAGTGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	81465585	81426582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_81427758_81428756_81428865_81431233_81431447_81431847_81431967_81432075_81432209_81435311_81435435_81435741_81435856_81436284_81436396_81437185_81437306_81438285_81438435_81440562_81440696_81443077_81443231_81444150_81444273_81446206_81446434_81447316_81447427_81450797_81450867_81452618_81452751_81452839_81452996_81454244_81454425_81455101_81455203_81456723_81456825_81460318_81460486_81463317_81463393_81465551
6399	chr2	+	2939	28	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	23	8957	23	143	5prime_fragment	FALSE	canonical	3	956	junction_9	69.0320098312682	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCCTGTGTTTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	146854938	146910963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711
6402	chr16	+	4122	17	NNC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	218.264022673802	4	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	1114	False	NA	NA	False	NA	NA	NA	93629148	93672965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652396_93657376_93657486_93659301_93659425_93659528_93659685_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
6403	chr17	+	1540	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	47	94	6	-83	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGCCAGTATTTGTCCC	NA	False	NA	NA	False	NA	NA	NA	27775594	27782554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
6405	chr8	-	5053	6	FSM	ENSMUSG00000031508.15	ENSMUST00000211445.2	1767	6	94	-3380	88	0	multi-exon	FALSE	canonical	3	43	junction_5	197.58299521973	7	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	NA	False	NA	NA	NA	11684942	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
6407	chr9	+	3882	7	Antisense	novelGene_ENSMUSG00000042688.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	55	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACCCGCCAGAGAGGGCGC	NA	False	NA	NA	False	NA	NA	NA	75294222	75317277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_75295500_75295553_75296428_75297446_75297651_75300646_75300816_75302799_75302865_75304875_75306039_75317147
6408	chr9	-	3436	24	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-3	0	intron_retention	FALSE	canonical	3	14	junction_23	147.235225813074	57	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTCTTTATTGAG	9753	False	NA	NA	False	NA	NA	NA	107648147	107617693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107618292_107619590_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647759
6409	chr12	-	3613	20	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	16	-411	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_15	235.942537255211	2	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTTCTTAGTTATTTTA	2694	False	NA	NA	False	NA	NA	NA	59058787	59005579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025350_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048095_59048186_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
6410	chr18	+	2751	4	NNC	ENSMUSG00000057561.11	novel	1905	4	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	761.070007000378	41	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTAAATGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730801	46743275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731707_46731768_46740570_46741568_46741647
6411	chr19	-	2078	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	3	27	3	-27	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	3	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGTCAGGCGTGGTTA	3766	False	NA	NA	False	NA	NA	NA	7017332	6998096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
6412	chr11	+	4269	10	NIC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	4	-12	intron_retention	TRUE	canonical	3	1417	junction_8	117.5901020442	19	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAATTCTTAAACGAAT	NA	False	NA	NA	False	NA	NA	NA	109541750	109560470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
6413	chr2	-	3349	7	NIC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-4	4	intron_retention	FALSE	canonical	3	126	junction_1	24.0791518861349	22	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	NA	False	NA	NA	NA	29677676	29666117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
6414	chr16	+	5475	33	NIC	ENSMUSG00000045983.17	novel	5440	33	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	839	junction_14	252.911559316567	625	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATTGCCTCTTTACTGA	NA	False	NA	NA	False	NA	NA	NA	20491476	20511633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20491627_20492348_20492406_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720_20507803_20507941_20508083_20510996
6416	chr8	-	4125	12	Antisense	novelGene_ENSMUSG00000031483.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	249	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGCAACCGTAGAAACCGC	NA	False	NA	NA	False	NA	NA	NA	27529451	27513894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_27514189_27515080_27515205_27517194_27517276_27518923_27518972_27519364_27519427_27519569_27519697_27521724_27521800_27521954_27522014_27522261_27522356_27523413_27523502_27526039_27526120_27526458
6417	chr5	+	4066	25	FSM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	79	0	79	0	multi-exon	TRUE	canonical	3	372	junction_9	39.992360381564	621	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTGTTATCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	77458072	77497171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273_77484443_77487167_77487265_77488221_77488317_77490376_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496266_77496926
6418	chr11	-	3193	1	NIC	ENSMUSG00000035455.13	novel	2092	4	NA	NA	-2105	-86	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACGGAGTTGCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	11753566	11750373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_11750400_11753600
6420	chr19	+	3367	21	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	280.419377896749	2	54	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	1888	False	NA	NA	False	NA	NA	NA	8875459	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879990_8886327_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
6421	chrX	-	4740	11	FSM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	52	5	-12	-5	multi-exon	FALSE	canonical	3	154	junction_9	30.3809150619266	345	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATCATCTTCTGTATCA	NA	False	NA	NA	False	NA	NA	NA	156381659	156330824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
6422	chr14	-	2975	7	NNC	ENSMUSG00000022051.16	novel	3259	7	NA	NA	11	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.697042630482	2702	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAACCTGCCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	67246294	67222697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67224208_67224428_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
6424	chr11	+	2841	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-25	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1435.14767604975	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940600	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22945039_22945694_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
6426	chr14	-	5251	14	FSM	ENSMUSG00000114797.2	ENSMUST00000225111.2	2936	14	19	-2334	19	-5	multi-exon	FALSE	canonical	3	173	junction_1	24.6028814399438	20	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAATCTTTGTAGGTCT	NA	False	NA	NA	False	NA	NA	NA	60488875	60455531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
6427	chr7	-	2465	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	-5	2	-5	-2	multi-exon	FALSE	canonical	3	1234	junction_21	93.4109735380392	2133	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143153798	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
6428	chr10	+	4807	27	NIC	ENSMUSG00000034453.9	novel	4975	28	NA	NA	0	-9	combination_of_known_splicesites	FALSE	canonical	2	6	junction_20	43.0505585528919	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACGGTACTCAGTCTGAG	NA	False	NA	NA	False	NA	NA	NA	84458155	84563033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
6429	chr5	+	2212	11	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	-20	1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	1493.53632697702	21	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTCTCGCTGTGTGGTCT	307	False	NA	NA	False	NA	NA	NA	77099174	77115353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77102287_77102405_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
6430	chr4	-	3528	9	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	172.979586945975	414	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAGAATCCTAATGAAGT	NA	False	NA	NA	False	NA	NA	NA	126954931	126941389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126951193_126951387_126952585_126952825_126953302_126953453_126954788
6431	chr2	-	2307	10	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-9	-27	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	479.508956648541	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCCCGTGCACAGGATG	NA	False	NA	NA	False	NA	NA	NA	154916376	154901256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902342_154904077_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
6432	chr3	-	2726	17	NNC	ENSMUSG00000027679.14	novel	2499	6	NA	NA	10211	35924	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGGAAGAGATTCTAGA	NA	False	NA	NA	False	NA	NA	NA	34124118	34074244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_34074311_34093673_34093729_34095211_34095304_34100178_34100251_34100583_34100735_34101114_34101208_34101779_34101898_34103301_34103423_34104214_34104302_34108369_34108479_34110476_34110564_34112170_34112230_34112314_34112385_34115980_34116180_34118266_34118467_34122307_34122400_34123063
6434	chr15	-	2631	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	10	1364	10	340	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	284	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATCAAGACCTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	11399741	11383750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
6437	chr8	+	3181	15	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	417.867307568675	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTTCTTGGTGTGC	8842	False	NA	NA	False	NA	NA	NA	120637567	120684298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321_120684121_120684200
6438	chr10	+	2648	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-8	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	443.8353689272	2	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAAGCTCCTGCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	128173670	128198188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836_128198076_128198125
6440	chr9	+	4211	10	ISM	ENSMUSG00000006673.15	ENSMUST00000006851.15	3331	11	584	-2	75	2	3prime_fragment	FALSE	canonical	3	141	junction_1	164.63899902514	25	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1758	False	NA	NA	False	NA	NA	NA	108394896	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
6441	chr2	-	3253	18	NNC	ENSMUSG00000027184.15	novel	760	9	NA	NA	16	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	610.252554218986	6	22	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATGAATGAGTACTGGT	NA	False	NA	NA	False	NA	NA	NA	103627302	103597456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103598488_103598608_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605757_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
6442	chr6	-	2523	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	-70	-815	3	-800	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	1	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGGTGTTGGTAGTA	NA	False	NA	NA	False	NA	NA	NA	51446822	51438924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
6443	chrX	-	3647	7	NNC	ENSMUSG00000025742.6	novel	3699	7	NA	NA	5	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	78.6074989354635	453	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTCTTTCATAGTTCTT	NA	False	NA	NA	False	NA	NA	NA	166165701	166129329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_166131995_166133510_166133671_166135127_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
6444	chrX	-	5392	4	FSM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	19	-2996	19	2996	multi-exon	FALSE	canonical	3	422	junction_3	23.8094285712381	536	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACTCATTATGTAGCCC	NA	False	NA	NA	False	NA	NA	NA	100266136	100252568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_100257471_100258006_100258132_100259088_100259185_100265867
6445	SIRV3	+	2307	4	NNC	SIRV3A	novel	2373	3	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_3	1363.38899641869	652	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1943	8292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2006_4003_4081_6057_6467_6533
6446	chr6	-	2643	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	265	-1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	1764.07128657893	1	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAACTCTGGATTTGAAT	8750	False	NA	NA	False	NA	NA	NA	145021645	144944884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961579_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145002586_145002679_145021614
6447	chr1	+	2993	12	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	7	-528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	283.441978845585	2	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTAGTCCTCTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	93406763	93437454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423374_93426775_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
6448	chr4	-	2605	7	Antisense	novelGene_ENSMUSG00000093975.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	39	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGGCCCGGGGCGGAGCC	NA	False	NA	NA	False	NA	NA	NA	147600516	147527842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147527997_147536168_147536262_147592040_147592096_147595207_147595336_147596800_147597035_147597705_147599559_147600428
6449	chr6	-	3546	7	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	-9	intron_retention	FALSE	canonical	3	783	junction_4	35.5371480128736	1	76	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCTACCCAAACTGTGTC	NA	False	NA	NA	False	NA	NA	NA	72416541	72409791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72412098_72412188_72412372_72412793_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
6450	chr17	-	3583	2	Intergenic	novelGene_144	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTCTGTTTCTTTTATC	NA	False	NA	NA	False	NA	NA	NA	35219817	35215700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35219186_35219719
6451	chr11	+	5224	7	Antisense	novelGene_ENSMUSG00000018362.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	87	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGCTGCCGGCCGGCGCG	NA	False	NA	NA	False	NA	NA	NA	106881584	106890290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106881699_106881894_106882159_106882238_106882331_106882680_106884558_106884800_106887472_106888062_106888165_106890186
6452	chr19	-	3116	15	Antisense	novelGene_ENSMUSG00000015176.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.257539376818856	5	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATCTGAGCACAAGGGGA	NA	False	NA	NA	False	NA	NA	NA	46073963	46064532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46064587_46067139_46067198_46067314_46067458_46067565_46067696_46068344_46068529_46069746_46069858_46069975_46070114_46070684_46070813_46070951_46071065_46071177_46071801_46071956_46072064_46072187_46072280_46072447_46073567_46073725_46073769_46073890
6453	chrX	-	3567	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	36	1	-4	-1	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	2	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAATTTGCTCACATTTT	NA	False	NA	NA	False	NA	NA	NA	37545295	37508384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
6454	chr1	+	3128	12	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	-2	-544	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	290.404761703101	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTTAGATATTAAATGA	NA	False	NA	NA	False	NA	NA	NA	93406740	93437438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427168_93429233_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
6455	chr1	+	4529	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	10	-6	-8	0	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	525	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTGAAAGTAGATCATTT	NA	False	NA	NA	False	NA	NA	NA	93731696	93749823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
6456	chr11	-	2928	15	ISM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	4712	846	4689	-846	3prime_fragment	FALSE	canonical	3	409	junction_5	35.235143055229	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGGTATTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	79848504	79825624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166
6457	chr7	+	3185	10	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	21	-248	intron_retention	TRUE	non_canonical	0	0	junction_8	289.227323129134	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868022	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882813_103882857_103882950_103883277
6458	chr10	-	2299	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	7	-17	7	1	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	3406	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCTTCTGTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	127358306	127352990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
6459	chr2	-	6018	27	FSM	ENSMUSG00000043909.17	ENSMUST00000110647.8	9405	27	-42	3429	-13	-16	multi-exon	FALSE	canonical	3	11	junction_8	35.6224656526131	56	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGGTTGTAGTAACTGG	8096	False	NA	NA	False	NA	NA	NA	121101864	121028747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
6460	chrX	+	2532	15	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_11	996.844820891785	27	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-50	True	NA	NA	NA	74139674	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140238_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149305_74149883_74149988_74150777_74150857_74151784_74151911_74152301
6462	chr7	-	4651	32	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-7	0	combination_of_known_junctions	TRUE	canonical	1	24	junction_10	39.0660477577263	266	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	NA	False	NA	NA	NA	29979828	29939562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
6463	chr6	-	3050	23	NNC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	-4	9	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	74.3450187852678	1	79	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTATACTTGAAATTTC	NA	False	NA	NA	False	NA	NA	NA	30873687	30748401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789674_30789783_30790645_30790722_30792861_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30838298_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
6464	chr6	+	2285	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	-74	0	5	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	155	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684452	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
6465	chrX	+	4082	11	Antisense	novelGene_ENSMUSG00000036572.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGCCCCTAACAAATAGCC	4375	False	NA	NA	False	NA	NA	NA	36355335	36373972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_36356314_36359171_36359478_36360512_36360732_36361073_36362754_36363155_36363343_36363745_36363790_36365679_36365791_36368081_36368179_36372565_36372677_36372802_36372904_36373724
6467	chr17	+	4643	22	NIC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	33	-4	intron_retention	FALSE	canonical	3	48	junction_8	91.6222155674459	2	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCATGTGGCTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	29879627	29922328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904882_29905024_29906009_29906129_29908868_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29920058_29920458_29920568_29921127
6468	chr18	+	3708	13	FSM	ENSMUSG00000024603.9	ENSMUST00000025505.7	3738	13	20	10	3	-10	multi-exon	FALSE	canonical	3	145	junction_9	21.4333592534835	610	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTTCTGTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	60659292	60691828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
6469	chr13	-	3677	6	NNC	ENSMUSG00000113204.2	novel	1989	6	NA	NA	-11	521	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	37.2934310569569	6	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATTTCTGACTCTCCAG	5207	False	NA	NA	False	NA	NA	NA	74765440	74752542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74755390_74755557_74755855_74757240_74757302_74758318_74758446_74760842_74761068_74765320
6470	chr4	-	2884	9	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	520	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	527.600405136311	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323260	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322619_141322694_141322791_141323205
6471	chr19	+	4165	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-16	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	898.334722510846	1	173	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	650	False	NA	NA	False	NA	NA	NA	10582970	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592319_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605225_10605787_10605913_10606442
6472	chr1	-	4139	25	NNC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	2407	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	119.587768500796	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAACGTTTGCCCTCTT	NA	False	NA	NA	False	NA	NA	NA	93366107	93335490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351599_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947
6473	chr6	-	2894	7	NIC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	-21	-16	intron_retention	FALSE	canonical	3	2400	junction_4	95.7914401186244	86	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGCGTTTCTGAAATGCT	NA	False	NA	NA	False	NA	NA	NA	83294556	83282688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83283792_83285914_83286041_83286443_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
6475	chr9	+	3398	3	NIC	ENSMUSG00000032518.7	novel	1599	6	NA	NA	-19	0	intron_retention	FALSE	canonical	3	5494	junction_1	191.5	5	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956890	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119959963_119960065_119960232_119960465
6477	chr11	+	2406	13	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	182	intron_retention	FALSE	canonical	3	4673	junction_2	336.499587254163	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940625	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22952402_22952816_22952931_22953136
6478	chr2	+	3361	29	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	42	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	291.275929475535	2	96	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAAATGTTGGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	146854957	146919912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866560_146866639_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869329_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
6481	chr17	-	2837	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	187	3	-9	-3	multi-exon	FALSE	canonical	3	561	junction_9	75.0022221893014	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2371	False	NA	NA	False	NA	NA	NA	45744476	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
6483	chr14	+	4540	23	NNC	ENSMUSG00000039367.12	novel	724	8	NA	NA	146	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	78.0184471722781	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATCCCTCTCATTACTC	NA	False	NA	NA	False	NA	NA	NA	20724642	20744915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724808_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
6484	chr9	+	2423	12	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	1280	junction_11	423.25136622138	10	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1178	False	NA	NA	False	NA	NA	NA	108437667	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438898_108438981_108439057_108439372_108439580_108439990_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
6485	chr10	+	4503	20	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-14815	-6	intron_retention	FALSE	canonical	1	3	junction_1	137.788569013153	6	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTCTATAAATGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	25259741	25399405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25259800_25259900_25260309_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377475_25377530_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
6489	chr17	-	3235	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-12	-1043	intron_retention	FALSE	canonical	0	0	junction_7	274.69994994539	1307	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATCCCCAATATTACTGT	8725	False	NA	NA	False	NA	NA	NA	24470333	24442214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24443321_24443881_24444052_24445448_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24454509_24454624_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
6490	chr14	-	3394	16	NIC	ENSMUSG00000021929.10	novel	4069	17	NA	NA	37	-593	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	160.187251538802	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCTTCATATGGTAACT	6583	False	NA	NA	False	NA	NA	NA	61677286	61603252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
6491	chr2	+	3173	15	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-46	0	intron_retention	FALSE	canonical	3	1260	junction_5	148.109877166534	157	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867531	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
6493	chr15	-	3210	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	-20	-3	-15	3	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	557	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6979	False	NA	NA	False	NA	NA	NA	98560790	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
6494	chr7	+	3936	6	NNC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	11	-3	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_2	54.3080104588632	25	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCTTGGGGTAATGAATT	NA	False	NA	NA	False	NA	NA	NA	41248719	41277954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_41248825_41261099_41261320_41261794_41261922_41262579_41262676_41274146_41274257_41274676
6495	chr5	-	2118	15	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10685	-7992	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	72	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCACCCGGCCCGCCCCCG	3868	False	NA	NA	False	NA	NA	NA	129875198	129864436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864511_129864594_129864640_129865297_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129869004_129869080_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
6496	chr12	+	3373	5	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	-68	-54	intron_retention	FALSE	canonical	3	6058	junction_3	411.707648095102	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758682	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859
6497	chr13	+	2201	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	52	2050	-13	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588114	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
6498	chr2	-	3446	14	Antisense	novelGene_ENSMUSG00000026917.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	260	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	494	False	27426549	NA	False	NA	NA	NA	27426532	27406260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_27406950_27408638_27408803_27409358_27409470_27409754_27409828_27410337_27410429_27410584_27410673_27410833_27410924_27415117_27415171_27418282_27418332_27421649_27421727_27423004_27423037_27423346_27423422_27423777_27423865_27424765
6501	chr11	-	1352	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	58	390	-50	-390	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	23	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGGCCCACTTGGACGC	1905	False	NA	NA	False	NA	NA	NA	59119038	59102629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
6502	chr4	+	5941	6	NIC	ENSMUSG00000059939.14	novel	2937	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	88	junction_1	47.3184953268804	8	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8253	False	NA	NA	False	NA	NA	NA	156194436	156211722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156206874_156207991_156208580_156209873
6505	chr3	+	3033	9	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	39	-387	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	325.988496729563	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTGGGGGCTCTATCT	NA	False	NA	NA	False	NA	NA	NA	105866868	105876689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873195_105874492
6506	chr5	+	3792	18	NIC	ENSMUSG00000036323.15	novel	3625	19	NA	NA	5	453	intron_retention	FALSE	canonical	3	245	junction_6	29.3228066463525	18	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGCAGTTGTGAGACAC	NA	False	NA	NA	False	NA	NA	NA	77122558	77147116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77143763_77144498_77144537_77145269_77145430_77146038
6508	chr1	-	3762	20	NNC	ENSMUSG00000026193.16	novel	7965	45	NA	NA	63	0	intron_retention	FALSE	non_canonical	0	0	junction_10	876.388395917367	1	77	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	71692257	71624681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636832_71637532_71637623_71638373_71638554_71638761_71638852_71639442_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648763_71692131
6509	chr3	-	2817	11	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	-12	-170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490.598664898306	79	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTTGTTCTAAAATTGT	9293	False	NA	NA	False	NA	NA	NA	104771701	104730264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104731793_104731878_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
6510	chr2	+	2888	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	1876	junction_7	268.766511120712	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119545_130119768_130119891_130120075
6511	chr12	+	3426	8	NIC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	-3	-143	intron_retention	FALSE	canonical	3	465	junction_7	36.8189170544331	1122	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTGTTTAAAATTAGTAC	NA	False	NA	NA	False	NA	NA	NA	59113704	59120641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115978_59116927_59117084_59117164_59117304_59118211
6512	chr16	+	5398	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	-24	-2508	-24	2508	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	152	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTACAGTTTTTATC	NA	False	NA	NA	False	NA	NA	NA	44544639	44560155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
6513	chr9	+	2625	23	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	intron_retention	FALSE	canonical	3	468	junction_1	38.8226524996353	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385257	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
6514	chr18	+	2969	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	-12	-686	-12	-2	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	1608	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGTGTGTCTTAATTA	NA	False	NA	NA	False	NA	NA	NA	21134952	21161278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
6515	chr10	-	2532	11	NIC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	-12	0	intron_retention	FALSE	canonical	3	1853	junction_10	113.212013496802	64	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTTGTGTGTTCTCTTTG	8733	False	NA	NA	False	NA	NA	NA	128401815	128393634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399199_128399445_128399575_128401608
6516	chr2	-	2925	4	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTCACAGTGTAGACCCA	NA	False	NA	NA	False	NA	NA	NA	152122359	152114897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152116112_152117315_152117465_152118862_152118950_152120884
6517	SIRV7	-	2337	6	NNC	SIRV7A	novel	2462	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1670.53363929015	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147923	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1337_1463_2676_2993_3112_43028_43078_114680_114989_147608
6520	chr1	-	4253	13	NNC	ENSMUSG00000073643.12	novel	4551	12	NA	NA	12	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.299471593825	1	104	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTAATTTGTGTAATTTT	NA	False	NA	NA	False	NA	NA	NA	79739426	79679985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_79681217_79681447_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
6521	chr11	-	4338	6	NNC	ENSMUSG00000038615.18	novel	4596	5	NA	NA	9	-11	intron_retention	FALSE	canonical	3	44	junction_4	580.655836102592	2	111	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATGGATGATTCAGC	NA	False	NA	NA	False	NA	NA	NA	96720318	96708267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96718536_96718755_96719050_96720236
6522	chr12	+	2862	6	NIC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	1278	junction_1	273.818626101294	266	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80992276	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267
6523	chr15	-	4440	25	NIC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	15	-8	intron_retention	FALSE	canonical	3	182	junction_12	25.1047458439413	6	73	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATCTCATTTGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	76524114	76510446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
6525	chr13	-	4505	8	NNC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-34	2602	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_6	408.837625569899	30	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTGCTCTTTTCTGCT	NA	False	NA	NA	False	NA	NA	NA	34089187	34061196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34083641_34084186_34089090
6529	chr19	+	5478	31	NIC	ENSMUSG00000024795.12	novel	5564	32	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	97	junction_15	72.6510763092254	169	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGGTGTACTTTATAAGG	NA	False	NA	NA	False	NA	NA	NA	34899744	34953135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918612_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34950258_34950410_34951827_34951971_34952892
6531	chr7	-	1120	4	Intergenic	novelGene_3010	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAAAGGGGCGGGCCTG	5295	False	NA	NA	False	NA	NA	NA	103877818	103868009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_103868090_103874709_103875188_103876014_103876105_103877346
6532	chr10	-	4398	17	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-13712	-15	intron_retention	FALSE	canonical	0	0	junction_15	128.229713307798	1	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACATGTAACATACTGCT	NA	False	NA	NA	False	NA	NA	NA	61191818	61155449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178937_61179406_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184379_61184474_61185919_61186085_61186674_61186855_61188715_61188815_61191592
6533	chr9	-	5200	37	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	-6147	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	53.8035406609483	2	26	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAACCTGTGTGGTGTGCT	9237	False	NA	NA	False	NA	NA	NA	21751070	21711480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714422_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920
6534	chr1	+	3806	15	NNC	ENSMUSG00000026554.16	novel	2754	14	NA	NA	-56	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	204.128873358904	9	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTAAAGCTTTTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	171975594	172023933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172015610_172015714_172016505_172016637_172020084_172020205_172021351_172021469_172022122
6535	chr11	+	4630	15	NIC	ENSMUSG00000017421.19	novel	2898	17	NA	NA	-12	124	intron_retention	FALSE	canonical	1	5	junction_12	449.672896988149	9	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTCCCACACAAATAA	NA	False	NA	NA	False	NA	NA	NA	80274144	80296683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80286088_80286215_80286400_80286617_80286702_80289241_80289297_80293471_80293538_80294190_80294235_80294426
6536	chr1	-	4796	26	NNC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	-51	-249	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_24	59.3845232362777	138	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCAGAGAGCTCCAGCC	NA	False	NA	NA	False	NA	NA	NA	74545016	74477137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74535095_74535129_74539114_74539260_74544818
6537	chr13	+	3238	5	NNC	ENSMUSG00000074867.5	novel	449	4	NA	NA	-40	5334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	11.9032558571174	43	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCTGTTGATTATTTAT	NA	False	NA	NA	False	NA	NA	NA	62367329	62389292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62367452_62381070_62381198_62381382_62381444_62382774_62385542_62389131
6538	chr6	-	2355	8	Intergenic	novelGene_4185	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGTGGTGCATGCCTGT	NA	False	NA	NA	False	NA	NA	NA	71852231	71833478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_71834031_71837984_71838090_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849902_71851295
6539	chr5	+	4393	28	FSM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-87	0	-48	0	multi-exon	TRUE	canonical	3	66	junction_6	57.377196351684	321	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	NA	False	NA	NA	False	NA	NA	NA	8848098	8916315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
6542	chr3	-	3099	11	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	13	-154	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	547.543057667614	1594	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTCCTTTCTGTC	9291	False	NA	NA	False	NA	NA	NA	104771703	104730248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104754166_104754345_104771655
6543	chr6	-	3372	19	NIC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	-10	-5	intron_retention	FALSE	canonical	3	25	junction_4	198.237947806714	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAATAAAAGTACGGGGG	7922	False	NA	NA	False	NA	NA	NA	124806381	124792005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
6545	chr11	-	4289	29	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1124.96974732566	1	167	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384908_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403705_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
6546	chr8	+	3602	17	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	2705	13839	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTCCTCTGGGGCGGGCC	NA	False	NA	59	True	NA	NA	NA	73214438	73228684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73215202_73215279_73215465_73215591_73215688_73215823_73215949_73216022_73216165_73216247_73216335_73216644_73216781_73216923_73217167_73217933_73218364_73220226_73220403_73221606_73221890_73222046_73222137_73222221_73222367_73223710_73223859_73223932_73224071_73224713_73224900_73228455
6549	chr10	-	2724	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	1168.92806305991	3	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAGTGCTTATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86541326	86526705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538856_86539339_86539464_86540157_86540261_86541170
6550	chrX	-	2981	2	Genic_Genomic	ENSMUSG00000083327.2	novel	2406	1	NA	NA	-256	572	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATAAGAACAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103392096	103388862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_103390715_103390967
6551	chr7	+	2798	13	NIC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	1	9	junction_11	310.330055031019	45	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79944232	79966002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79962779_79962880_79964861
6552	chr19	+	2739	12	NIC	ENSMUSG00000015176.12	novel	2978	13	NA	NA	-3	75	intron_retention	FALSE	canonical	0	0	junction_10	276.931593426999	186	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGTAATAATTTTCCCT	151	False	NA	NA	False	NA	NA	NA	46064315	46072975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46064589_46067141_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
6554	chr6	-	3079	20	NIC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_16	192.331489002841	1093	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCAGTTCTTTGGGG	7867	False	NA	NA	False	NA	NA	NA	124806436	124791981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801611_124801814_124801949_124802074_124802142_124803261_124803388_124806247
6556	chr8	+	1420	4	Genic_Genomic	ENSMUSG00000090118.2	novel	1119	2	NA	NA	9452	-689	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTTCCGCTTCCGGCGC	NA	False	NA	NA	False	NA	NA	NA	125567888	125589753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_125568125_125568430_125569159_125587684_125588010_125589622
6557	chr14	-	2500	2	Antisense	novelGene_ENSMUSG00000021890.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGCATTTATATTACTT	8742	False	NA	NA	False	NA	NA	NA	31231637	31227493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_31227501_31229144
6558	chr17	+	1085	7	FSM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	52	0	-9	0	multi-exon	FALSE	canonical	3	455	junction_1	41.5508390074403	1091	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4892	False	NA	NA	False	NA	NA	NA	24645666	24658294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24645717_24645826_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
6560	chr16	-	2061	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	22	10	22	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	5	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	45975418	45973357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
6561	chr18	-	2073	15	Antisense	novelGene_ENSMUSG00000034484.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCAAGAGCCGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	53353890	53309431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_53309562_53322631_53322843_53327499_53327664_53330924_53330993_53331256_53331300_53332826_53332969_53336110_53336190_53342657_53342734_53343399_53343516_53343770_53343863_53345822_53346029_53349450_53349595_53351171_53351253_53351358_53351431_53353441
6564	chr6	-	2761	10	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.077870224551	38	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72410607_72410650_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
6565	chr9	-	3930	17	NIC	ENSMUSG00000032480.18	novel	3806	19	NA	NA	-5	-3	intron_retention	FALSE	canonical	2	7	junction_16	138.028515509477	8	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGAGTGCTGCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	109930112	109913393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914640_109914752_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927921_109929883
6566	chr5	+	2199	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	375	14	375	-14	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	1631	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
6567	chr1	+	2858	11	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	-2	-528	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	392.041949286043	5	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTAGTCCTCTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	93406740	93437454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93428240_93428282_93431169_93431241_93433265_93433324_93434684_93434805_93435434
6568	chr1	+	3152	14	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	268.867557197981	2	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406740	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434_93436624_93436668
6569	chrX	+	2546	16	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	16	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	703.927351049492	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTATTTTGAATTTGCTTT	NA	False	NA	-50	True	NA	NA	NA	74139674	74153378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301_74152476_74152513
6570	chr9	+	4340	25	Intergenic	novelGene_1160	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	25	25	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGCGTCTCCACCGAC	3040	False	NA	NA	False	NA	NA	NA	107617705	107648158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_107618291_107619589_107619720_107619798_107619898_107621035_107621111_107621381_107621562_107622133_107622205_107622284_107622439_107623219_107623377_107626899_107626999_107627206_107627292_107627661_107627751_107628920_107628991_107629074_107629153_107629309_107629398_107630175_107630273_107631219_107631382_107631621_107632456_107632516_107633113_107634107_107634194_107636976_107637046_107637517_107637593_107642695_107642850_107644741_107644908_107646759_107646825_107648082
6571	chr4	+	3757	6	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-6	-9	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	662.153637760905	6	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAATCTTGGTTTTT	4680	False	NA	NA	False	NA	NA	NA	135583416	135597210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135594436
6572	chr15	-	2336	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	481	0	481	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	858	False	NA	NA	False	NA	NA	NA	36608736	36595904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
6573	chr9	+	2739	24	FSM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	30	31	3	-19	multi-exon	FALSE	canonical	3	468	junction_2	39.8133167299073	163	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTCAATAAAGAATAACTA	NA	False	NA	NA	False	NA	NA	NA	108384934	108393109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
6574	chr3	+	2625	16	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	0	-350	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_12	330.871710620429	6	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4849	False	NA	NA	False	NA	NA	NA	34074246	34124121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34116054_34116181_34118267_34118469_34122309_34122402_34123065
6576	chrX	+	3252	24	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	6	-475	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_23	672.526298317149	1	108	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529142	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547689_20548686
6577	chr13	-	2144	15	NNC	ENSMUSG00000021546.19	novel	2653	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2954.75130346128	7	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	4778	False	NA	NA	False	NA	NA	NA	58550303	58538955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58539264_58539807_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
6578	chr16	+	3245	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	19	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGACTACTGTGTTGAATT	NA	False	NA	NA	False	NA	NA	NA	13598584	13632700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631613_13631938
6581	chrX	-	2901	25	Intergenic	novelGene_4069	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	13	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGGAATTGCGGGAGCGG	NA	False	NA	NA	False	NA	NA	NA	143152672	143101022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101116_143102996_143103054_143105003_143105152_143119194_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256_143134372_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147102_143150892_143150933_143152553
6583	chr19	-	3233	26	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	-64	-152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	170.574061334073	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATGTAGAATATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	37340074	37247980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306459_37306509_37306588_37307826_37308012_37339912
6584	chr6	+	2736	14	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	429.104185911608	1944	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	71808317	71852238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
6585	chr12	+	3629	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	120	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	1	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGTTCATGCGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	86517010	86568401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565923_86566079
6586	chr11	-	945	4	NNC	ENSMUSG00000020717.20	novel	2977	16	NA	NA	-9036	-8111	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_3	564.814030357682	7	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTTCTCCCAGGGCACC	388	False	NA	NA	False	NA	NA	NA	106615256	106590019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106590712_106605727_106605755_106605844_106606011_106615196
6587	chr11	-	3145	12	ISM	ENSMUSG00000020717.20	ENSMUST00000183610.8	3006	15	18521	8	-5394	-8	3prime_fragment	FALSE	canonical	3	410	junction_2	388.557557134862	2	99	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTTCAGTTATCTGCAT	1308	False	NA	NA	False	NA	NA	NA	106587567	106545051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579
6588	chr1	-	3643	12	NIC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	3	-19	intron_retention	FALSE	canonical	3	944	junction_8	79.6623037868483	34	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCAAATATTTCCAGTAT	NA	False	NA	NA	False	NA	NA	NA	177624064	177590760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_177591864_177595220_177595371_177597490_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
6589	chr8	-	4315	5	NIC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	17	-4	intron_retention	FALSE	canonical	3	2367	junction_3	172.84530656052	3	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTCTGTGTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	108315073	108307016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
6590	chr5	-	5393	43	Antisense	novelGene_ENSMUSG00000105929.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	61	11	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCTCCGCCCCGAGTCCC	NA	False	NA	NA	False	NA	NA	NA	33149021	33021068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33021161_33021915_33022043_33025316_33025403_33026161_33026210_33032623_33032710_33034411_33034497_33035970_33036018_33044318_33044391_33050716_33050801_33053224_33053284_33055220_33055292_33056334_33056409_33058799_33058907_33059174_33059248_33061119_33061255_33061617_33061679_33061800_33061874_33067797_33067869_33069550_33069590_33070443_33070562_33075265_33075488_33081503_33081704_33084228_33084368_33085186_33085282_33091291_33091360_33094864_33095057_33095491_33095647_33100572_33100692_33101311_33101477_33102260_33102486_33103976_33104112_33113196_33113301_33116622_33116686_33121965_33122126_33125072_33125150_33125977_33126114_33131158_33131266_33132694_33132887_33136726_33136898_33141201_33141375_33144279_33144339_33148080_33148169_33148281
6591	chr2	+	2974	19	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-9	-1507	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	189.96195200586	1	68	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAACCAAAAACTCAATTC	7213	False	NA	NA	False	NA	NA	NA	23046520	23087765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076302_23076922_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
6592	chr8	+	5488	10	FSM	ENSMUSG00000031904.6	ENSMUST00000034378.5	3750	10	33	-1771	4	1771	multi-exon	FALSE	canonical	3	50	junction_7	138.200159010825	269	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATACATACTGTTCCTTG	1865	False	NA	NA	False	NA	NA	NA	106895521	106927109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
6593	chr12	-	2995	10	FSM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	-239	8	-239	-4	multi-exon	FALSE	canonical	3	10	junction_9	620.186073232944	705	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTCTGTCACTGTCTG	NA	False	NA	NA	False	NA	NA	NA	108859363	108825963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
6594	chr3	-	1887	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30627	-2418	multi-exon	FALSE	non_canonical	0	0	junction_1	0	328	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCGAACGCCGCAGACG	NA	False	NA	NA	False	NA	NA	NA	121251850	121220302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_121220476_121243595_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
6595	chr1	-	4375	27	NNC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	35	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	149.364675251606	6	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAACGTTTGCCCTCTT	NA	False	NA	NA	False	NA	NA	NA	93406064	93335490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342531_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368504_93405928
6596	chr8	-	4065	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21249	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	179.46946815545	1	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGCTGTGTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	81585876	81491065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81545907_81546012_81585823
6597	chr12	-	5006	7	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	1105	8	NA	NA	-60	-5	intron_retention	FALSE	canonical	3	37	junction_3	62.3074812700868	32	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATATATCTGAAATGTT	NA	False	NA	NA	False	NA	NA	NA	55201741	55092465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_55092729_55095671_55095763_55100085_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55201606
6599	chr13	+	2595	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-7	471	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	113.706859951368	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGACTTGTAAGAAATCTC	NA	False	NA	NA	False	NA	NA	NA	62277722	62321704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62321150_62321603
6601	chr3	+	2461	13	NNC	ENSMUSG00000001416.14	novel	1943	13	NA	NA	-187	0	intron_retention	FALSE	non_canonical	0	0	junction_4	716.741871054163	26	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3617	False	NA	NA	False	NA	NA	NA	88204235	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210072_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
6603	SIRV5	-	760	9	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-4035	1070	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGTAAAACACTCATGGC	NA	False	NA	NA	False	NA	NA	NA	6441	1107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV5_-_1149_1986_2072_2274_2316_3298_3403_3481_3643_5379_5448_5538_5626_6110_6169_6326
6604	chr17	-	3299	9	NNC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	19	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	196.789187647594	11	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGACATAGTCAGTTGCC	NA	False	NA	NA	False	NA	NA	NA	53996287	53981823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_53982637_53982750_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53996238
6605	chr9	+	3329	19	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	-30	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	584.015529664142	3	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	21279203	21316659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310860_21311255_21311310_21314431_21314798_21315355_21315488_21315991
6606	chr2	+	2630	15	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-73	0	intron_retention	FALSE	non_canonical	0	0	junction_14	424.934910982175	13	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867504	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876084_84877054
6607	chr11	-	2327	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	38	1194	0	-1	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	10	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9654	False	NA	NA	False	NA	NA	NA	106679320	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
6608	chr8	+	4950	29	NIC	ENSMUSG00000004565.16	novel	4438	34	NA	NA	19	-2	intron_retention	FALSE	canonical	1	71	junction_24	52.7257415929886	7	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGAAGCAGCCTGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	3566892	3594258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
6610	chr17	+	4390	23	NIC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	33	0	combination_of_known_junctions	FALSE	canonical	3	368	junction_15	34.5130529864612	4	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGGCTCTGTGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	29879627	29922333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29920058_29920458_29920568_29921127
6612	chr7	-	4445	13	FSM	ENSMUSG00000035547.15	ENSMUST00000040971.14	4498	13	47	6	47	-6	multi-exon	FALSE	canonical	3	136	junction_9	14.761765552339	300	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGATCTGTCTGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	97827434	97770771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97827250
6613	chr1	-	3384	9	NNC	ENSMUSG00000026484.14	novel	3160	7	NA	NA	34	-105	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	262.018964008333	5	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATCTAAGCAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	151376672	151345261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151358876_151359105_151359481_151359617_151376469
6614	chr6	-	3060	8	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	5	intron_retention	FALSE	canonical	3	591	junction_1	89.7599974535268	1726	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTATTACTTGTCCATT	NA	False	NA	NA	False	NA	NA	NA	72416539	72409776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414432_72416328
6615	chr3	+	3448	8	NIC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-9	-2	intron_retention	FALSE	canonical	3	19	junction_7	273.388786477113	21	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACTGTATTTTCCCTAC	NA	False	NA	NA	False	NA	NA	NA	102965654	102975220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102971877_102972834
6616	chr11	-	1370	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	46	384	46	-384	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTTGGACGCGCTGGC	1893	False	NA	NA	False	NA	NA	NA	59119050	59102623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
6619	chr17	+	3857	14	NIC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-39	0	intron_retention	FALSE	canonical	1	6	junction_1	490.400391903084	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4832	False	NA	NA	False	NA	NA	NA	87979928	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_87980235_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88026234_88026715_88026964_88028310_88028487_88030758
6620	chr13	+	4096	8	FSM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	2	3	2	-3	multi-exon	FALSE	canonical	3	173	junction_5	15.8461995701281	301	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTTGGCAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	81031530	81044158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
6621	chr5	-	3313	18	NNC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	-35	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	336.133160711799	40	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTAAGCTGTTGGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	149559709	149540313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548523_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
6622	chr10	+	2777	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-5	-2	intron_retention	FALSE	non_canonical	0	0	junction_8	600.645146251908	1	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1580	False	NA	NA	False	NA	NA	NA	79690457	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697849_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699449_79699502
6624	chr18	-	3942	15	ISM	ENSMUSG00000003778.15	ENSMUST00000152612.8	4335	20	11291	3	11291	-3	3prime_fragment	FALSE	canonical	3	50	junction_7	156.513088713933	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAACTCTGGCCTTTGG	5236	False	NA	-48	True	NA	NA	NA	34746315	34732885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268
6626	chr1	+	3764	14	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	7	0	intron_retention	FALSE	canonical	3	1434	junction_2	218.428139375415	10	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724150	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
6627	chr11	-	3512	5	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	-31	-4	intron_retention	TRUE	non_canonical	0	0	junction_1	600.382534306254	5	62	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGATTCAGCTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	96714870	96708260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96710769_96710813_96711343_96712076_96712236_96712929_96713146_96714770
6628	chr3	+	3114	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	226	junction_20	93.1009504905751	633	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCGTGGTGTCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	54600225	54636181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
6629	chr7	+	3876	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	24	-1087	-17	-6	multi-exon	FALSE	canonical	3	335	junction_1	308.5	1010	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTTGCGTCCAGTTC	254	False	NA	NA	False	NA	NA	NA	3339082	3348952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3339156_3341727_3341816_3345237
6631	chrX	-	3281	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3736	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	413.376474143123	1	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23185154	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102006_23102046_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
6632	chr5	-	4878	3	NNC	ENSMUSG00000105987.5	novel	503	3	NA	NA	2	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1050	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACTATTCTAGTCTGAG	5259	False	NA	NA	False	NA	NA	NA	23917662	23903297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23905574_23914244_23915339_23916154
6633	chr18	-	2900	14	NNC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_9	1820.92619972696	8	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACACTTTGCTGACTTA	NA	False	NA	NA	False	NA	NA	NA	64649570	64632724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643612_64644683_64644772_64644855_64644949_64645054_64645121_64648396_64648475_64649482
6634	SIRV3	+	2333	4	NNC	SIRV3A	novel	2373	3	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_3	1363.38899641869	815	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1943	8292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2006_4003_4081_6057_6747_6787
6636	chr7	-	3775	12	NNC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	12	-77	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	840.679201991555	128	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAAGCTGTGTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	89629751	89603944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89612511_89612557_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
6640	chr10	-	2491	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	133	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	600.338127865118	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8943	False	NA	NA	False	NA	NA	NA	128401605	128393636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401349
6641	chr11	-	3611	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	44	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.421985581654	19	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACCTTGAGTCCATTTTT	NA	False	NA	NA	False	NA	NA	NA	88755368	88721621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722273_88722371_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
6642	chr11	+	3856	28	Antisense	novelGene_ENSMUSG00000065262.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTTCCCTAGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	98883792	98915013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_98883992_98891587_98891677_98891798_98891957_98892173_98892268_98893699_98893894_98894330_98894528_98894643_98894787_98894937_98895169_98896828_98896980_98897787_98897906_98898004_98898127_98900060_98900152_98900418_98900521_98900613_98900723_98900851_98900962_98901296_98901426_98901731_98901889_98902845_98902985_98905239_98905381_98905515_98905615_98905710_98905888_98906854_98907067_98907255_98907352_98909619_98909768_98912536_98912603_98913167_98913257_98913665_98913819_98914871
6643	chr11	+	3817	10	NNC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	-19	752	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	123.133872745415	9	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017285	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105017433_105017601_105018790_105019566_105019902_105021272_105021323_105021754_105021892_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
6645	chr11	-	2392	11	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-129	2	intron_retention	FALSE	canonical	0	0	junction_1	579.107252587981	12	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3650	False	NA	NA	False	NA	NA	NA	120463796	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120451902_120452982_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
6646	chr18	+	4275	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	-31	-3721	-31	0	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGCAATGATTTAAATG	NA	False	NA	NA	False	NA	NA	NA	57506932	57526028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
6647	chrX	-	3553	12	Antisense	novelGene_ENSMUSG00000083906.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	166	23	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGGAACCACTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	158376063	158315668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158315831_158331233_158331308_158334742_158335372_158336237_158336886_158338465_158338645_158340436_158340550_158341328_158341393_158342831_158342957_158350073_158350360_158350912_158351009_158357938_158358112_158375059
6648	chr14	-	5138	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	-31	79	-31	-79	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	312	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATATTGTCTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	58127764	58070238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
6649	chr5	-	2287	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-40	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	569.284732926202	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCTGTAGAGTTTTTAG	2280	False	NA	NA	False	NA	NA	NA	138170120	138162848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164225_138164935_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
6650	chr2	+	5482	42	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	10217	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_39	208.816431827265	1	141	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCTGTGTCATGTGGCA	1829	False	NA	NA	False	NA	NA	NA	30186657	30234272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30233304_30233361_30233472_30233603_30233713
6652	chrX	+	3201	26	ISM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	-107	4760	-84	-81	5prime_fragment	FALSE	canonical	3	214	junction_1	224.054636193943	87	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGCAACAGCAGCAGCCG	NA	False	NA	NA	False	NA	NA	NA	143100911	143152686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
6653	chr13	+	4547	18	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	32	-2	intron_retention	FALSE	canonical	3	40	junction_16	46.1771075265176	75	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCGTCTACTGGCATTT	NA	False	NA	NA	False	NA	NA	NA	35059518	35090045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35087257_35088026_35088073_35089865
6655	chr5	+	2912	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	824.87387924862	23	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAACTAAGTATCTTTCA	NA	False	NA	NA	False	NA	NA	NA	34493757	34510770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574
6656	chr17	+	3704	32	NNC	ENSMUSG00000067150.7	novel	5081	32	NA	NA	38	-1303	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	77.9414252168146	3	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGCCTCGGTTGTCATC	NA	False	NA	NA	False	NA	NA	NA	46513780	46553218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546927_46547835_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
6657	chr16	+	3954	18	NNC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	17	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	171.732269298286	2	78	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTACTCGATAAAGGTAA	1137	False	NA	NA	False	NA	NA	NA	93629171	93672950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93667517_93667567_93668141_93670124_93670283_93671646
6660	chr14	+	3273	7	NIC	ENSMUSG00000056234.16	novel	4032	10	NA	NA	1485	-3	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	209.307389581289	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACATCAGTTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	31894299	31901201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_31894653_31894845_31894955_31895357_31895448_31896349_31896491_31897895_31898913_31899189_31899331_31899779
6661	chr12	+	2349	9	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	29	-54	intron_retention	FALSE	canonical	3	5416	junction_8	462.843369159589	14	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758268	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
6662	chr11	-	4160	18	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	5	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	214.30211833735	42	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTCATACACCCAATCA	NA	False	NA	NA	False	NA	NA	NA	40624238	40592229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40599025_40600657_40601104_40604804_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
6663	chr7	-	2591	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_12	411.870860066479	14	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153805	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143124700_143124816_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
6664	chr13	-	3606	5	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18650	3079	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	25.5868618630734	23	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74739503	74724397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74727579_74728971_74729033_74729232_74729360_74730309_74730434_74739390
6665	chr17	-	5446	40	FSM	ENSMUSG00000002496.11	ENSMUST00000228412.2	5432	40	10	-24	7	-8	multi-exon	FALSE	canonical	3	88	junction_15	40.1073674085831	200	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGCACAGACAGCAGTCA	NA	False	NA	NA	False	NA	NA	NA	24851594	24815470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
6666	chrX	-	5213	36	NNC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	5502	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	113.384071875648	1	100	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACCAGTTACTGTGTTT	9819	False	NA	NA	False	NA	NA	NA	92670219	92348379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624491_92625646_92625741_92628191_92628282_92629453_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093
6668	chrX	+	3219	10	Antisense	novelGene_ENSMUSG00000080862.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	45	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGGCAGAGCCTCCGCCTG	NA	False	NA	NA	False	NA	NA	NA	23085603	23231277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_23087091_23094811_23094927_23101464_23102259_23113597_23113795_23114348_23114486_23127675_23127813_23181368_23181434_23221374_23221490_23227734_23227824_23231194
6669	chr4	-	5124	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-7	-415	intron_retention	FALSE	canonical	2	2	junction_13	146.481417099766	295	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAATAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	115980863	115951875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967912_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
6670	chr2	+	1901	4	Antisense	novelGene_ENSMUSG00000032715.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	491	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCTAACTGAGCAGCTCT	1608	False	NA	NA	False	NA	NA	NA	152179341	152185826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_152180607_152181633_152181922_152184949_152185248_152185776
6671	chr1	-	5772	22	NIC	ENSMUSG00000042772.16	novel	5767	22	NA	NA	-119	0	combination_of_known_junctions	FALSE	canonical	3	176	junction_5	39.6466250175655	305	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGGTGTGTAGAGGATTT	NA	False	NA	NA	False	NA	NA	NA	152778516	152712745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
6672	chr3	+	2638	11	ISM	ENSMUSG00000001416.14	ENSMUST00000167718.2	2056	12	-27	-247	0	-10	intron_retention	FALSE	canonical	3	2432	junction_7	93.7096046304753	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTCATTTGAGACCGTT	3814	False	NA	NA	False	NA	NA	NA	88204432	88229061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88204574_88206648_88206711_88208106_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766
6673	chr7	-	5194	31	NNC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	9	-37	intron_retention	FALSE	canonical	0	0	junction_18	46.9646320827351	6	68	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAGATTTGTAAACCAATA	NA	False	NA	NA	False	NA	NA	NA	29979835	29939604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29940140_29940655_29941310_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953549_29955237_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
6674	chr2	+	3572	19	NNC	ENSMUSG00000026790.20	novel	3807	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	410.924946588054	1	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7225	False	NA	NA	False	NA	NA	NA	29779828	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794110_29804242_29804315_29804402_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
6675	chr13	+	3763	31	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	23	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_30	503.640975519489	2	82	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGATACTGTGTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	49835689	49887732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865317_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882251_49887368
6676	chr17	-	2737	9	FSM	ENSMUSG00000024097.12	ENSMUST00000234503.2	1991	9	4	-750	0	0	multi-exon	FALSE	canonical	3	75	junction_6	890.532565378718	3250	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	80514732	80507508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512050_80512511_80512690_80512868_80513276_80513458_80514603
6679	chr15	+	3626	21	NIC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	2	2	combination_of_known_splicesites	FALSE	canonical	1	46	junction_3	185.137489450408	1	47	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGATTTGTGCTTCAGT	70	False	NA	NA	False	NA	NA	NA	12117946	12184551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_12118034_12118324_12118425_12135352_12135377_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
6680	chr12	+	2153	9	NNC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	68	junction_5	830.705865138197	134	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992307	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995437_80995868_80995943_80996267_80996379_80996493
6681	chr5	+	2760	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-13	intron_retention	TRUE	non_canonical	0	0	junction_5	1199.66729115512	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTGGATCATTCACACTT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867920_129868140_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
6682	chr14	+	3515	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_25	108.5905631259	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56640122	56726892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724513_56726767
6683	chr3	-	299	1	NIC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-39	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	9	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAGCCCAAATAAATGAAT	2682	False	NA	NA	False	NA	NA	NA	153647579	153647280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153647300_153647600
6684	chr18	-	2942	25	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	468.001149986716	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTTTGGGCCATGTTA	NA	False	NA	NA	False	NA	NA	NA	42395168	42335417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42352976_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
6685	chr12	+	3352	7	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-58	intron_retention	FALSE	canonical	3	5890	junction_1	402.935892336899	37	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTGAACTTTCATGGCA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859
6686	chr7	-	3530	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	28	0	6	0	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	742	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTGTATTGTAAATGT	NA	False	NA	NA	False	NA	NA	NA	105401414	105394017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
6688	chr8	+	3830	22	NNC	ENSMUSG00000018796.14	novel	3897	21	NA	NA	-1	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_21	91.7312944718842	416	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGGAGAATGTCTTTC	2223	False	NA	NA	False	NA	NA	NA	46924090	46989079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376_46988383_46988423
6690	chr11	-	3780	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	1795	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	175.635751371306	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAGAGAAGCTGATAGT	NA	False	NA	NA	False	NA	NA	NA	95896766	95852466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
6692	chr2	-	2561	8	Antisense	novelGene_ENSMUSG00000026864.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCCCCGAAACGCGAC	NA	False	NA	NA	False	NA	NA	NA	34666652	34662272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_34662456_34662567_34662801_34663179_34663318_34663830_34663946_34664037_34664430_34664545_34664782_34665074_34665244_34665557
6694	chr15	+	2545	19	Antisense	novelGene_ENSMUSG00000022241.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCGGAACCAGCTAACCAG	NA	False	NA	NA	False	NA	NA	NA	11383803	11399730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_11384246_11385169_11385281_11387131_11387176_11387337_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388550_11389664_11389829_11390397_11390496_11391145_11391294_11391899_11391979_11392055_11392121_11392317_11392435_11392871_11392992_11393239_11393367_11394309_11394503_11397268_11397345_11399568
6695	chr2	-	2469	5	ISM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	39293	67	39115	-67	3prime_fragment	FALSE	canonical	3	314	junction_1	15.7062885494951	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAAGCATTGTAATCAAG	4142	False	NA	NA	False	NA	NA	NA	102864565	102851486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507
6696	chr17	+	3264	22	Antisense	novelGene_ENSMUSG00000077931.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	836	17	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTCCTCCAGCGGCGCC	NA	False	NA	NA	False	NA	NA	NA	36267707	36280623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36268482_36268570_36268646_36268734_36268796_36268961_36269137_36269219_36269250_36269960_36270032_36270120_36270193_36270324_36270613_36270759_36271085_36271465_36271620_36271704_36271844_36271928_36272122_36272592_36272716_36272877_36272979_36274019_36274129_36274212_36274284_36274459_36274570_36274644_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
6698	chr12	+	2935	28	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	11	-98	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	274.196249045091	1	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCCTTTCATAGCCTTA	8037	False	NA	NA	False	NA	NA	NA	76302197	76366478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361795_76364380_76364475_76366354
6700	chr4	-	2931	9	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	521.535713062874	5	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327231	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317415_141322613_141322791_141323205_141323260_141327158
6701	chr6	-	2805	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	2	-3	0	3	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
6702	chr2	+	4762	26	NIC	ENSMUSG00000035437.16	novel	4967	26	NA	NA	65	-7	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	49.1926823826471	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAAAGTAGTTTTATGTT	1621	False	NA	NA	False	NA	NA	NA	37333372	37456459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_37333469_37359527_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
6704	chr11	+	7020	13	NIC	ENSMUSG00000017639.14	novel	677	3	NA	NA	17	-14	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	20.8706332758097	161	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTGTGCCTGACTTGTG	NA	False	NA	NA	False	NA	NA	NA	79551404	79588835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_79551683_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
6705	chr6	-	5413	23	NNC	ENSMUSG00000033769.17	novel	5439	22	NA	NA	4	-11	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	70.235730588068	219	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAAAAGCCACTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	85046435	84595479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_84598494_84602106_84602220_84723882_84723957_84768222_84768365_84795659_84795705_84812022_84812203_84820990_84821126_84825747_84825860_84828832_84828943_84830558_84830665_84831682_84831781_84832456_84832529_84835369_84835491_84837154_84837202_84837616_84837701_84867498_84867568_84885094_84885272_84966306_84966512_84980029_84980076_84980176_84980268_84981970_84982019_84988299_84988466_85046277
6707	chr14	+	3231	7	NIC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-1527	1272	intron_retention	FALSE	canonical	3	6334	junction_1	436.989607046514	5	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	824	False	NA	NA	False	NA	NA	NA	63371439	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
6709	chr18	+	3132	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	21	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	802.400061923602	3	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAATCTGTTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	67908065	67928550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921840_67924933_67925085_67926219_67927868_67927929
6710	chr13	+	3068	23	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	14	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	452.699773261202	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835619	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840938_49860226_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
6711	chr11	-	1472	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	37	0	-34	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	5836	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190878	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
6713	chr7	+	3224	3	NNC	ENSMUSG00000074141.14	novel	504	3	NA	NA	-70	-1112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	28	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCTTGTTCAGGATTGT	304	False	NA	NA	False	NA	NA	NA	44465740	44481257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465827_44478071_44480108_44480155
6715	chr2	+	3802	6	ISM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	37	1	37	-1	intron_retention	FALSE	canonical	3	1115	junction_3	107.21828202317	4	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8606	False	NA	NA	False	NA	NA	NA	72306539	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222
6716	chr3	+	4470	22	NIC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	3	-6	intron_retention	FALSE	canonical	3	5	junction_7	79.1884860729804	451	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCACTCTGCCTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	88243569	88269639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256417_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
6717	chr7	-	2582	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	7	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	519.91525376137	2623	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCATCTGCCTCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	33867993	33840124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857494_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
6718	chr11	+	4073	17	ISM	ENSMUSG00000017119.21	ENSMUST00000071537.13	3239	21	8337	-939	-1524	0	3prime_fragment	FALSE	canonical	3	112	junction_10	45.2099270072403	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	6889	False	NA	NA	False	NA	NA	NA	101455334	101472777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
6719	chr10	+	3046	9	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	-30	-80	intron_retention	FALSE	canonical	3	717	junction_1	81.2341330660948	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAATTCCTCCTCCTTA	NA	False	NA	NA	False	NA	NA	NA	21870534	21875710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21873337_21873796_21874149_21874558
6720	chr3	+	4376	22	NNC	ENSMUSG00000015522.19	novel	4325	21	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	111.38847467422	286	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	NA	NA	NA	95341726	95404551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95341873_95355682_95355795_95358968_95359046_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
6721	chr9	+	4459	8	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-7	-13	intron_retention	FALSE	canonical	0	0	junction_5	2164.61152663116	3	89	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCCTATTGAGAACTG	NA	False	NA	NA	False	NA	NA	NA	108765774	108778674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774430_108776548_108776665_108777702_108778006
6722	chr6	-	3262	25	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.75591536914	28	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	10	True	NA	NA	False	NA	NA	NA	29609615	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29540976_29541578_29541643_29541757_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
6723	chr2	-	3699	23	NIC	ENSMUSG00000039671.19	novel	4130	24	NA	NA	40	-19	combination_of_known_junctions	FALSE	canonical	3	8	junction_11	188.200262600707	83	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCACAGGAAGCAACAGAAAC	NA	False	NA	NA	False	NA	NA	NA	165740896	165627457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165654268_165654779_165657236_165657390_165662461_165662609_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
6724	chr6	+	1320	4	Antisense	novelGene_ENSMUSG00000005667.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGCAAAGATAAATAACAATA	5404	False	NA	NA	False	NA	NA	NA	83282799	83287502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_83283791_83285913_83286044_83286446_83286533_83287389
6725	chr5	-	4305	27	FSM	ENSMUSG00000062234.15	ENSMUST00000135225.8	4310	27	-1	6	-1	0	multi-exon	FALSE	canonical	3	15	junction_23	73.3495017589351	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCAGTCTCTGGCTTGTA	NA	False	NA	NA	False	NA	NA	NA	108777606	108717285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108771125_108771241_108772048_108772109_108772895_108772958_108777366
6727	chr18	+	4071	4	Antisense	novelGene_ENSMUSG00000024580.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	913	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCTCCTAAAAACCACGCC	NA	False	NA	NA	False	NA	NA	NA	61845494	61859427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_61849198_61851823_61851907_61852772_61852926_61859295
6728	chr3	-	2857	6	NNC	ENSMUSG00000027828.13	novel	2957	5	NA	NA	33	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	246.814424213821	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTGTTTTTCTGTAA	2749	False	NA	NA	False	NA	NA	NA	65300011	65287079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_65288926_65288988_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
6730	chr12	+	6765	28	ISM	ENSMUSG00000042029.8	ENSMUST00000084828.5	4684	29	80	-1921	48	-199	3prime_fragment	FALSE	canonical	3	183	junction_1	32.2243081487453	201	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGTGCCAAGAATAATAT	NA	False	NA	NA	False	NA	NA	NA	116369101	116427152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
6731	chrX	-	2723	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	2	-9	intron_retention	FALSE	canonical	0	0	junction_1	415.306080494697	24	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTTACAGTTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	158921407	158905213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906003_158906116_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
6733	chr2	-	2438	10	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-9	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	366.363443645113	8	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGGCTAAAAGCTGGTC	NA	False	NA	NA	False	NA	NA	NA	154916376	154901242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907507_154907607_154909242_154909319_154910747_154910939_154916284
6734	chr6	+	2628	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	279.020540860744	488	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5458	False	NA	NA	False	NA	NA	NA	125108892	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108979_125109130_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
6735	chr6	-	4577	18	NIC	ENSMUSG00000029701.16	novel	4465	19	NA	NA	315	115	intron_retention	FALSE	canonical	3	173	junction_12	24.3074311903308	22	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTAAATGAACCTTTTT	-10	True	NA	NA	False	NA	NA	NA	29164690	29125025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
6736	chr6	-	4464	27	NIC	ENSMUSG00000030279.16	novel	3494	26	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_4	21.2642225290113	224	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCTAACTCTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	143045860	142956653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_142957863_142958927_142959075_142963608_142963800_142965053_142965156_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
6739	chr19	-	2998	22	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	475	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTCGCGCGCTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	38956717	38919400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38919519_38919833_38919955_38923855_38923979_38926847_38926905_38928912_38928951_38929090_38929104_38930895_38930935_38932155_38932384_38933832_38934018_38935168_38935311_38938629_38938827_38940276_38940374_38941984_38942147_38943132_38943273_38943355_38943490_38945471_38945561_38945639_38945761_38947485_38947604_38948111_38948273_38953040_38953136_38953848_38953927_38956175
6740	chr10	-	4629	16	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	-18	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	229.742754691706	1	170	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTTAGTTCTTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	62438078	62416033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418387_62418832_62418878_62420405_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434121_62434231_62434671_62437906
6741	chr2	+	2644	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	132	junction_8	702.495046245879	353	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119235_130119395_130119545_130119768_130119891_130120075
6742	chr11	+	3357	8	NNC	ENSMUSG00000038366.16	novel	3540	7	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	229.040233521162	19	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGGACTAGGCTTCTTC	4581	False	NA	NA	False	NA	NA	NA	97690515	97729583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897_97728188_97728238
6743	chr5	-	3398	13	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	21	-1	intron_retention	FALSE	canonical	3	1644	junction_11	207.949563195822	11	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCTTGTTAATAACTC	2918	False	NA	NA	False	NA	NA	NA	138169482	138162862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578
6744	chr11	+	2384	13	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-2	186	intron_retention	FALSE	canonical	3	4673	junction_2	339.799573278131	33	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940623	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
6745	chr12	-	3294	11	NNC	ENSMUSG00000041716.8	novel	2795	2	NA	NA	-19035	-16202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	967	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCGGAGCCCGAGCACCA	NA	False	NA	NA	False	NA	NA	NA	102743966	102724192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_102724435_102727626_102727762_102728177_102728241_102729716_102729811_102732064_102732119_102732502_102732609_102734326_102734535_102735349_102735502_102736038_102736202_102737476_102737538_102741950
6746	chr3	+	4948	18	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	69	-2781	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	390.892510822734	135	142	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCATCTCAGATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	63883595	63927219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053_63924532_63924628_63926158_63926367
6747	chr5	+	3494	6	Intergenic	novelGene_775	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	43.753856972843	86	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGTTCGTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	104757290	104900353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104757441_104836430_104836465_104836648_104836776_104895405_104895467_104896979_104897892_104898143
6748	chr9	-	4745	9	NIC	ENSMUSG00000031922.13	novel	2262	10	NA	NA	35	0	intron_retention	FALSE	canonical	3	58	junction_3	63.3082735509349	11	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGCTAACAAAGGCTTTA	NA	False	NA	NA	False	NA	NA	NA	13738216	13719090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13732980_13738151
6749	chr6	-	2649	6	FSM	ENSMUSG00000039985.15	ENSMUST00000081956.12	2737	6	88	0	-15	0	multi-exon	FALSE	canonical	3	93	junction_5	848.577303490967	11	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148846236	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846086
6751	chr11	-	3533	4	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	-36	0	intron_retention	FALSE	canonical	3	133	junction_3	578.474430434627	59	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714875	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713113_96714770
6752	chr10	+	2590	12	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	0	3	intron_retention	FALSE	non_canonical	0	0	junction_11	505.650763091361	23	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1585	False	NA	NA	False	NA	NA	NA	79690462	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698683_79699122
6754	chr6	-	5438	18	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	20	-16	intron_retention	FALSE	canonical	0	0	junction_8	133.484910957333	5	227	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCATGTGATGTTAACTA	9418	False	NA	NA	False	NA	NA	NA	82751415	82702058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712375_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
6755	chr19	+	3621	24	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	4177	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	358.546150662658	1	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	6094	False	NA	NA	False	NA	NA	NA	8879665	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879885_8879937_8882376_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
6756	chr1	+	2449	9	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-28	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	634.427386999489	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATGTTTTTTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	4928008	4968130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928135_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
6757	chrX	-	3617	8	NIC	ENSMUSG00000031297.15	novel	2717	11	NA	NA	-276	-5	intron_retention	FALSE	canonical	3	1326	junction_2	68.8049594795287	3	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAAAACCTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	100128063	100122820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123199_100123305_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753
6758	chr2	+	3244	18	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATACAAATCAGCATTAGA	1063	False	NA	NA	False	NA	NA	NA	4995534	5015588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4996949_4997688_4997835_4998553_4998667_4999379_4999496_5000533_5000673_5001910_5002081_5003536_5003646_5004484_5004594_5005672_5005868_5006074_5006194_5008820_5008985_5009751_5009922_5011153_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499
6759	chr5	-	3841	15	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23551	45630	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	146	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256845	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208740_108228785_108228888_108229000_108229082_108234861_108234953_108235157_108235261_108235804_108235956_108239926_108240024_108241205_108241284_108242004_108242107_108246982_108247047_108248670_108248857_108251891_108251990_108252130_108252184_108252290_108252391_108254448
6760	chr3	+	3171	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	127.784767267316	602	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGTGTCTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	54600278	54636182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600390_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
6761	chrX	+	1785	8	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-3104	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1268.30164441449	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTGTGCTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100483092	100492196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100483287_100485121_100485263_100486982_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
6764	chr8	-	4357	24	Antisense	novelGene_ENSMUSG00000065439.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	612	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGTGCGCGGTCACCTGA	NA	False	NA	NA	False	NA	NA	NA	108285227	108162996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_108163070_108179606_108179694_108184072_108184223_108184511_108184632_108209961_108210101_108212176_108212271_108232932_108233064_108244529_108244743_108259830_108259921_108267254_108267429_108272073_108272130_108275099_108275182_108275659_108275789_108276090_108276168_108276412_108276482_108276675_108276766_108278906_108279068_108280557_108280735_108281064_108281206_108281612_108281728_108282039_108282144_108283086_108283188_108283341_108283415_108283516
6765	chrX	+	3382	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	49	-904	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	216.456955620196	37	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACCCCAATGAACAATAGC	NA	False	NA	NA	False	NA	NA	NA	150799472	150844786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817113_150819108_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
6766	chr16	-	3002	8	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-9950	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	369.553287974903	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACGCATTCCTGCAACCT	NA	False	NA	NA	False	NA	NA	NA	22230529	22200066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22200171_22200351_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
6767	chr12	+	3735	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	25	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	302.714065671808	3	117	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGCTGAGTCGTTCAT	NA	False	NA	NA	False	NA	NA	NA	86516915	86568391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86516932_86517057_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561064_86561325_86565594
6768	chrX	+	3289	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	312.456235988793	27	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACTCAGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	95139697	95212159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95210627_95211130
6769	chr6	-	3250	25	NNC	ENSMUSG00000025607.16	novel	3155	24	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	62.8869687084163	1	52	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	NA	False	NA	NA	NA	30873701	30748410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30806947_30807068_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
6770	chr5	-	3124	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	11	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	462.5	2	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963440	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937811_135938193_135940506_135963176
6771	chr18	+	3519	19	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	425.561314147286	2	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGTCTAAGAAGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	35251966	35387824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657_35387182_35387332
6772	chr1	+	3221	7	NIC	ENSMUSG00000026254.18	novel	1119	7	NA	NA	41	-236	combination_of_known_junctions	FALSE	canonical	3	212	junction_6	831.352646126914	17	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGGCTGTGGACTTGTC	NA	False	NA	NA	False	NA	NA	NA	87142048	87167974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
6773	chrX	+	2769	5	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-3122	1448	intron_retention	FALSE	canonical	3	3075	junction_1	174.666825699673	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTTATTTATTATATATA	NA	False	NA	NA	False	NA	NA	NA	100483074	100489385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100483287_100485121_100485424_100486535_100486632_100486900_100487968_100488293
6774	chr11	+	2338	13	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	183	intron_retention	FALSE	canonical	3	4673	junction_2	347.321446933529	77	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATATTAACTTGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	22940625	22953334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
6775	chr7	+	1847	6	Antisense	novelGene_ENSMUSG00000030655.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	56	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGTGTGCTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	117718138	117737258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_117719634_117720383_117720469_117721148_117721261_117725619_117725739_117726358_117726378_117737241
6778	chr1	-	2039	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	119	12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	2939.71684392374	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCCTAGAGGTTACATT	NA	False	NA	NA	False	NA	NA	NA	86286967	86278204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278593_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282868_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285020_86285099_86285175_86285828_86285946_86286927
6779	chrX	+	4075	14	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	12	1072	intron_retention	FALSE	canonical	3	30	junction_2	77.3420130475573	2	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGTGGAAACCCTGGAG	NA	False	NA	NA	False	NA	NA	NA	20570184	20584996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20570359_20573150_20573222_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20580161_20580252_20580971_20581091_20581176_20581266_20581362_20582985_20584044_20584232_20584512_20584592
6780	chr6	-	2684	14	Intergenic	novelGene_4183	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTAACTGTGAATAGCTT	NA	False	NA	NA	False	NA	NA	NA	71852238	71815683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_71815816_71821622_71821693_71823265_71823459_71828754_71828863_71829711_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849908_71851300
6781	chr9	-	2051	1	Antisense	novelGene_ENSMUSG00000006673.15_AS_novelGene_ENSMUSG00000032604.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGAATAAAGGCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	108394078	108392027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108392000_108394100
6782	chr4	+	5243	15	NNC	ENSMUSG00000042408.14	novel	4210	15	NA	NA	-48	-78	intron_retention	TRUE	canonical	1	1	junction_4	29.0703755513044	93	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTGTTGTACAGGGAT	2696	False	NA	NA	False	NA	NA	NA	126971127	127018085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126972340_126980767_126980835_126982121_126982348_126984699_126984956_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
6784	chr17	-	6224	12	NIC	ENSMUSG00000036568.8	novel	3685	12	NA	NA	-24	-5	combination_of_known_junctions	FALSE	canonical	3	40	junction_11	40.0510005446568	252	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACGTGTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	47169432	47109050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47124858_47124965_47135375_47137050_47140837_47140907_47140990_47141040_47141876_47141923_47169361
6785	chr10	-	4667	14	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	31	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	241.278914936427	1	202	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTAGTTCTTGGTGGCT	NA	False	NA	-124	True	NA	NA	NA	62438029	62416032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418384_62420371_62420545_62421303_62421464_62423242_62423317_62423793_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
6787	chr6	+	3643	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	35	-393	1	393	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	626	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTCTAGATTGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	52690748	52744158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
6788	chr1	+	4539	6	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	6	-1914	intron_retention	FALSE	non_canonical	0	0	junction_5	89.3742692277817	12	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTTACTGTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	190795214	190816757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190815835_190815887
6789	chr8	-	1768	9	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	-68	714	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	197.424036023986	19	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACGTTAGAGAAGCAAACT	3793	False	NA	NA	False	NA	NA	NA	95328422	95301570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309641_95313949_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
6790	chr5	-	2609	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	43	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	11	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCGGCGGTGCCCAGCT	NA	False	NA	NA	False	NA	NA	NA	135963361	135937264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938139_135938955_135940506_135963176
6791	chr9	+	3373	11	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	21	-10	intron_retention	FALSE	non_canonical	0	0	junction_10	313.83345901927	1	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATTGCCTCTTAGGTT	5533	False	NA	NA	False	NA	NA	NA	35122471	35128300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124833_35125042_35125352_35125482_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
6792	chr7	-	2970	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	1	1	intron_retention	FALSE	canonical	3	20	junction_11	420.841371917567	9	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153792	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143124700_143124816_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
6793	chr2	+	3743	20	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	26	-708	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	245.526569639402	4	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGAGTTTAGTTGGTT	7258	False	NA	NA	False	NA	NA	NA	23046565	23088564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046625_23046693_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073226_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
6794	chrX	-	1273	9	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGCACCTCCAATGGCT	NA	False	NA	NA	False	NA	NA	NA	20548915	20544891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
6795	chrX	-	3303	10	NIC	ENSMUSG00000025151.17	novel	2884	12	NA	NA	-14	-4	intron_retention	FALSE	canonical	3	1240	junction_7	172.49634098821	1114	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATTAAGTGTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	93585623	93579085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_93579284_93579465_93579852_93580479_93580963_93581147_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
6796	chr9	+	2522	23	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	intron_retention	FALSE	canonical	3	468	junction_2	38.7072077769025	237	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGTCTCTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	108385257	108393134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
6797	chr11	+	4716	21	NIC	ENSMUSG00000020741.18	novel	5379	26	NA	NA	-4924	-1	intron_retention	FALSE	canonical	0	0	junction_8	76.5124172928813	353	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCCCAGCCTTTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	74550383	74561672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
6798	chr3	-	3318	26	NNC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	135.966607665265	4	6	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	100069719	100045495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100046159_100046374_100046488_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
6799	chrX	-	2054	9	NNC	ENSMUSG00000031297.15	novel	2717	11	NA	NA	-802	-4	intron_retention	FALSE	canonical	1	10	junction_8	480.735829224326	1	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAAAACCTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	100126867	100122819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126499_100126753
6800	chr11	+	5407	8	NIC	ENSMUSG00000000275.17	novel	5590	9	NA	NA	70	-14	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	192.418018588569	77	84	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATCATAAGTGCGACAT	NA	False	NA	NA	False	NA	NA	NA	88890271	88911105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906544_88906644_88907020
6801	chr2	+	1611	4	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	648	-4	intron_retention	FALSE	canonical	3	558	junction_2	41.5879255981295	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGATATTTTACTCATT	NA	False	NA	NA	False	NA	NA	NA	174267120	174269291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174267821_174268109_174268423_174268609_174268740_174268823
6802	chrX	-	4453	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	71	0	-42	0	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	8	120	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105055434	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
6804	chr19	+	3597	10	FSM	ENSMUSG00000034820.5	ENSMUST00000038379.5	3500	10	-19	-78	-19	78	multi-exon	FALSE	canonical	3	152	junction_5	38.5749230894635	480	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGATTCTGCATTGAATAGA	NA	False	NA	NA	False	NA	NA	NA	10502610	10525095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
6805	chr8	+	3608	5	NNC	ENSMUSG00000008450.9	novel	948	5	NA	NA	-12	1064	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1489.99471475573	6	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAAACTATGGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	106587264	106607026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106604297_106604843
6806	chr12	-	5331	21	FSM	ENSMUSG00000020593.17	ENSMUST00000222989.2	4103	21	0	-1228	0	-6	multi-exon	FALSE	canonical	3	30	junction_20	37.3187620373452	23	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATCAGGCATATGAAC	7246	False	NA	NA	False	NA	NA	NA	16639767	16585960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16634508_16634653_16639718
6807	chr19	+	719	4	ISM	ENSMUSG00000071644.11	ENSMUST00000135025.2	1272	5	520	300	520	-300	3prime_fragment	FALSE	canonical	3	8905	junction_1	396.184300547106	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTCCTGTCCTGCC	6726	False	NA	-40	True	NA	NA	NA	8950287	8955543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8950473_8954681_8954855_8954948_8955074_8955307
6808	chr18	-	1125	6	NNC	ENSMUSG00000047879.18	novel	1346	7	NA	NA	-3	298	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	359.265584213128	4	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGGAACCAGGCATGGTA	-3	True	NA	NA	False	NA	NA	NA	10030084	10011698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_10012264_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
6810	chr10	+	2924	12	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	10	0	intron_retention	FALSE	non_canonical	0	0	junction_10	494.42543664004	2	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	1571	False	NA	NA	False	NA	NA	NA	79690448	79700266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698356_79698475_79698704_79698811
6811	chr14	-	2811	8	ISM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	8774	-1315	-59	1315	3prime_fragment	FALSE	canonical	3	2964	junction_2	198.16711150348	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTTACGAGCAAATGATC	NA	False	NA	NA	False	NA	NA	NA	63737767	63728480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569
6812	chr11	-	4300	11	NIC	ENSMUSG00000001036.18	novel	4243	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	141.853762727677	462	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	61470498	61408074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61444335_61444406_61470392
6813	chr7	-	3152	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	2	-2	intron_retention	FALSE	non_canonical	0	0	junction_22	467.310875697811	2	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143153766	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143150797_143150876_143153718
6814	chr16	-	3543	15	NIC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	280.002669447916	548	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2560	False	NA	NA	False	NA	NA	NA	21981762	21877758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
6816	chr19	-	3341	20	NNC	ENSMUSG00000025007.14	novel	3427	19	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	415.084171953225	3	58	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576859	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40538920_40539056_40539774_40541967_40542064_40543034_40543222_40545857_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
6817	chr19	-	4124	7	FSM	ENSMUSG00000024764.11	ENSMUST00000236628.2	3993	7	-143	12	6	-7	multi-exon	FALSE	canonical	3	441	junction_1	32.7078821624934	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCAGATGCTGGGATGG	NA	False	NA	NA	False	NA	NA	NA	7218542	7203044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7212524_7218302
6818	chr11	-	3241	13	NNC	ENSMUSG00000078622.9	novel	5193	13	NA	NA	-465	1516	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_12	175.732336713158	18	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTAATCTTGAATATTCC	NA	False	NA	NA	False	NA	NA	NA	106107635	106090088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106107536
6819	chr8	+	2847	13	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	441.045317651398	22	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8842	False	NA	NA	False	NA	NA	NA	120637567	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678685_120681623_120681673_120682936_120683003_120683321
6820	chrX	+	4590	26	NIC	ENSMUSG00000000037.18	novel	1257	12	NA	NA	2	3	combination_of_known_splicesites	FALSE	canonical	3	8	junction_15	109.632841794783	3	87	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGCAATTAACAGCTAAG	180	False	NA	NA	False	NA	NA	NA	159865522	160041195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_159865683_159869958_159870037_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
6821	chr5	-	3755	18	NIC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	60.4775688348989	13	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGCAAGATTTTGAGC	NA	False	NA	NA	False	NA	NA	NA	9211749	9168877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176803_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
6822	chr9	-	1698	4	NNC	ENSMUSG00000110834.2	novel	461	4	NA	NA	-47	1819	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	29.8477618740315	105	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	124044816	124031168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_124032567_124033755_124033817_124033999_124034127_124044704
6823	chr7	-	4138	9	NIC	ENSMUSG00000030741.16	novel	3251	10	NA	NA	2	0	intron_retention	FALSE	canonical	3	376	junction_6	44.4487063928749	26	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976591	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125974376_125975845_125975912_125976008
6824	chr13	-	2925	3	Antisense	novelGene_ENSMUSG00000114372.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	179	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCTTGGACTGTGATGG	NA	False	NA	NA	False	NA	NA	NA	83285832	83282635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_83282762_83282895_83285431_83285568
6827	chr17	-	5903	19	FSM	ENSMUSG00000024070.16	ENSMUST00000119284.8	4743	19	-16	-1144	-16	0	multi-exon	FALSE	canonical	3	97	junction_5	36.6411106225551	120	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCCTATGTGAAAACCTT	NA	False	NA	NA	False	NA	NA	NA	79328261	79256833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_79259460_79260105_79260192_79261902_79262171_79263950_79264050_79264570_79264733_79266460_79266568_79268539_79268613_79269955_79270009_79273603_79273881_79275468_79275547_79278788_79278913_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
6828	chr2	+	3854	21	FSM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	2	0	2	0	multi-exon	FALSE	canonical	3	359	junction_7	40.333949719808	867	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCGTCTGCCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	160487809	160564684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
6829	chr7	-	3698	9	Antisense	novelGene_ENSMUSG00000062031.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	67	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGGACATGGGGTAACACA	NA	False	NA	NA	False	NA	NA	NA	140527560	140522982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_140523116_140523193_140524676_140524861_140525260_140525364_140525438_140525535_140525670_140525789_140525926_140526018_140526114_140526240_140526340_140526412
6831	chr15	-	2506	20	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-17	345	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	740.076727324181	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	NA	False	NA	NA	False	NA	NA	NA	11399704	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384076_11384168_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
6832	chr16	+	5445	10	FSM	ENSMUSG00000053774.10	ENSMUST00000232137.2	4384	10	-8	-1053	3	1053	multi-exon	FALSE	canonical	3	7	junction_3	51.2071561357021	10	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCACCCCAAAGTTTTAA	8255	False	NA	NA	False	NA	NA	NA	32151077	32207766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
6833	chr8	-	6194	13	NNC	ENSMUSG00000033658.17	novel	6612	12	NA	NA	97	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.26071215858	2	177	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAAATGTGTATGGGT	NA	False	NA	NA	False	NA	NA	NA	111754299	111729830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731178_111731483_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749083_111750597_111750647_111754229
6834	chr13	-	2967	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	490.535218939892	121	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498347	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487954_74491455_74491618_74492969_74493057_74498264
6835	chr2	-	4609	27	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	34	18598	-10	2842	5prime_fragment	FALSE	canonical	3	201	junction_21	37.2085916145832	228	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAGGCACTTATAACA	NA	False	NA	NA	False	NA	NA	NA	126718116	126652082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
6836	chr15	-	2548	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	40	1417	-24	287	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	8	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGGAGAAAACAGAGTT	NA	False	NA	NA	False	NA	NA	NA	11399711	11383803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
6837	chr4	+	2145	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	7	0	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3199076928666	3	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447362_147637753_147637884_147639766_147639854_147665698_147665826_147667290_147667431_147667838_147668724_147669118
6838	chr4	-	2590	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-9330	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	210.829409713161	17	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTTTGACTTGCTTGTT	2505	False	NA	NA	False	NA	NA	NA	147736300	147696397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147735985_147736078_147736213
6841	chr14	+	6761	25	NNC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	198	-343	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_1	35.7067531739057	162	68	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCTCAGTCTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	57124307	57199815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_57124414_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
6842	chr6	-	4316	23	FSM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	29	0	29	0	multi-exon	FALSE	canonical	2	285	junction_22	59.9717047606688	568	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	8314	False	NA	NA	False	NA	NA	NA	118396406	118360341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385112_118388442_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
6843	chr2	-	4989	19	NNC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.2040652404741	3	119	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84481068	84431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84431187_84431538_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
6844	chr2	+	3747	5	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	0	5	0	1	intron_retention	FALSE	canonical	3	1993	junction_1	270.413572144595	4	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116349	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895
6845	chrX	+	5191	16	FSM	ENSMUSG00000025246.14	ENSMUST00000088217.12	5234	16	38	5	38	-5	multi-exon	FALSE	canonical	3	377	junction_1	40.4669412401448	658	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAGAGAACATAGTGACT	NA	False	NA	NA	False	NA	NA	NA	76554656	76706584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
6848	chr8	-	3676	16	NIC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	3	-8	intron_retention	FALSE	canonical	3	416	junction_12	66.4514526218619	9	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTATCATATAAGACACT	NA	False	NA	NA	False	NA	NA	NA	73228960	73214481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73224072_73224714_73224900_73228455_73228630_73228901
6851	chr7	-	3553	29	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	156.353178178541	1595	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28038184	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
6852	chr2	+	3507	19	NIC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	0	-17	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	296.928562094747	2	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTTTGTATCACTATG	7225	False	NA	NA	False	NA	NA	NA	29779828	29821740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
6853	chr15	+	4769	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	-3	0	-3	0	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	412	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTGGGTACTGTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	84807608	84827164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
6855	chr6	+	4174	23	NNC	ENSMUSG00000029771.13	novel	403	2	NA	NA	-306	67978	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	117	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGTCCGTAGACTTTGGC	3771	False	NA	NA	False	NA	NA	NA	29540838	29609848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29541865_29543260_29543364_29551854_29551964_29554793_29554964_29555153_29555312_29556978_29557071_29558749_29558868_29560080_29560217_29561355_29561420_29562856_29562934_29565169_29565264_29565663_29565860_29568856_29568983_29571023_29571116_29572575_29572692_29575003_29575154_29578463_29578603_29579544_29579699_29582168_29582315_29586044_29586194_29588021_29588096_29589027_29589227_29609362
6856	chr3	+	3884	3	FSM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	-27	-12	0	12	multi-exon	FALSE	canonical	3	422	junction_2	58	847	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGACCTGTTGTGAAGCAG	382	False	NA	NA	False	NA	NA	NA	95532303	95539425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95532488_95534059_95534186_95535851
6858	chr7	-	2592	19	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	3	979	3	-979	5prime_fragment	FALSE	canonical	3	1924	junction_12	270.644389933487	2	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGCCAGAGGTGGTAGA	NA	False	NA	NA	False	NA	NA	NA	126165580	126146605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
6859	chr12	+	2876	27	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-21	-91	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	270.861165009049	61	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATAGCCTTAATTCATG	8005	False	NA	NA	False	NA	NA	NA	76302165	76366485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349782_76350662_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
6860	chr2	-	2134	17	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	81	3396	-50	36	5prime_fragment	FALSE	canonical	3	1726	junction_3	108.266742354243	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACGAGGTAATATATTGT	NA	False	NA	NA	False	NA	NA	NA	103627368	103598758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
6861	chr2	-	4632	26	NNC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.996883763281	1	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	482	False	NA	NA	False	NA	NA	NA	119618000	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594529_119594619_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
6862	chr2	+	4458	1	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	65	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCACTGATTGCTTGCT	NA	False	NA	NA	False	NA	NA	NA	154712302	154716760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154712300_154716800
6863	chr4	+	5423	13	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-10	-12	intron_retention	FALSE	non_canonical	0	0	junction_4	108.195392949772	14	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTTTGCTTTCTTGT	15	True	NA	NA	False	NA	NA	NA	11558961	11615793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595663_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604953_11605006_11606045_11606337_11609293_11612439_11612617_11612819_11615442
6864	chr3	+	2543	12	ISM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	40	0	3	0	intron_retention	FALSE	canonical	3	2266	junction_3	123.010178978129	17	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3844	False	NA	NA	False	NA	NA	NA	88204462	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766
6865	chr2	+	3231	8	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	32	-3	intron_retention	FALSE	canonical	3	1115	junction_3	88.7849959745681	58	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTGTGTTTATTTTTG	8601	False	NA	NA	False	NA	NA	NA	72306534	72317234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
6866	chr13	-	2657	17	NIC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-8	-1195	intron_retention	FALSE	canonical	3	963	junction_10	111.70692682193	1	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAGCATCCAGAGGGGC	NA	False	NA	NA	False	NA	NA	NA	6698769	6637118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_6637150_6638524_6638690_6647894_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
6868	chr6	+	4161	12	Antisense	novelGene_ENSMUSG00000029826.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGTGAGGCTCGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	38282242	38331495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_38284391_38288111_38288247_38288524_38288656_38289328_38289420_38293255_38293358_38296637_38296760_38302126_38302304_38306085_38306208_38308697_38308797_38313346_38313604_38317159_38317290_38330848
6869	chr9	-	3812	18	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-11	-136	intron_retention	FALSE	canonical	3	299	junction_6	61.6594621559125	68	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGTTGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	114469263	114415169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
6870	chr4	+	3981	11	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	0	-273	intron_retention	FALSE	canonical	3	26	junction_4	131.149380478903	14	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAAAATGGCTGTTTACA	-11	True	NA	NA	False	NA	NA	NA	21848047	21876194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860877_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585
6871	chr16	-	3363	10	ISM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	3	2	3	-2	intron_retention	FALSE	canonical	3	921	junction_4	40.8985495833861	13	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAACCATTGGCTCCTCAT	6269	False	NA	NA	False	NA	NA	NA	38370581	38345503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704
6872	chr4	-	3352	5	Antisense	novelGene_ENSMUSG00000028676.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	359	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGACTTGGCTCCCGCCT	NA	False	NA	NA	False	NA	NA	NA	135597216	135583402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_135583601_135585613_135585721_135589084_135589189_135590350_135590514_135594436
6874	chr13	-	3997	10	NIC	ENSMUSG00000034928.17	novel	4292	11	NA	NA	33	0	intron_retention	FALSE	canonical	3	234	junction_9	190.366767511663	21	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCCCAAGCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	54835434	54827222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54832302_54835306
6875	chr11	-	2642	14	NIC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	1	14	junction_13	426.115299561879	20	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239136	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75239051
6876	chrX	-	4049	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	585	-3	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	1	85	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGATACTCTGGTGTTCG	NA	False	NA	NA	False	NA	NA	NA	59223864	59101321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
6877	chr6	-	3527	26	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	122.773847378014	12	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3522	False	NA	NA	False	NA	NA	NA	125168537	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145132_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
6878	chr2	+	4210	18	FSM	ENSMUSG00000027263.13	ENSMUST00000110658.8	4250	18	40	0	-1	0	multi-exon	FALSE	canonical	3	119	junction_12	41.5047418810901	296	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	NA	False	NA	NA	NA	121001688	121029251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
6880	chr4	+	2354	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1902	multi-exon	TRUE	non_canonical	0	0	junction_1	240.859481856123	6	63	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146206906	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146428065_146428160_146502756_146502934_146511242_146511302_146547961_146548020_146548860_146548988_146550437_146550592_146551008_146551310_146551477_146552069_146552336
6881	chr5	+	2069	9	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1122.04163804201	21	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	756	False	NA	NA	False	NA	NA	NA	77099623	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110218_77110358_77112288_77112470_77114093_77114253_77114494
6882	chr3	+	3542	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	26	-17	intron_retention	FALSE	non_canonical	0	0	junction_7	279.992201057567	6	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGAAGTTCTTTGCTTAA	NA	False	NA	NA	False	NA	NA	NA	102965626	102975205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102973172_102974048
6883	chr15	+	2527	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-6	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	640.092710629243	14	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTAATGTTCTGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	81756678	81799327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779648_81787707_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828_81799126_81799234
6884	chr11	+	3827	24	FSM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	57	3	-38	-3	multi-exon	FALSE	canonical	3	128	junction_10	25.9765053072448	313	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTCCAGTCCACTGAAT	2809	False	NA	NA	False	NA	NA	NA	78192411	78213280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
6885	chr9	+	3231	12	NIC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	123	-10	intron_retention	FALSE	canonical	3	518	junction_4	144.409827737268	1	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATTGCCTCTTAGGTT	5635	False	NA	NA	False	NA	NA	NA	35122573	35128300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35126328_35126762_35126927_35127010_35127110_35127233
6886	chr15	-	4299	36	NNC	ENSMUSG00000034022.9	novel	4410	37	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_33	159.08314858358	1	106	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACGAGTGTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	76491763	76480010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480108_76480208_76480348_76480419_76480550_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487716_76487846_76487923_76487952_76491534
6887	chr13	-	4165	31	NNC	ENSMUSG00000042590.18	novel	4325	30	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.363605487319	2	93	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGACTTGTTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	107073398	106930946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_106932191_106932282_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
6890	chr5	+	2863	14	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	21	0	intron_retention	FALSE	canonical	0	0	junction_4	263.808945571058	38	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815998	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826992_33828747_33828855_33829008_33829130_33829325
6892	chr11	-	6236	30	Genic_Genomic	ENSMUSG00000086586.2	novel	151	2	NA	NA	-11538	12333	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAGGAGGTATAGGCCA	8706	False	NA	NA	False	NA	NA	NA	78181430	78157230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_78157300_78157419_78157544_78157759_78157834_78157925_78158068_78158922_78159043_78159150_78159314_78159462_78159723_78160312_78160514_78162109_78163209_78163602_78163794_78163917_78164124_78164264_78164386_78164507_78164729_78165287_78165479_78165610_78165712_78165830_78166039_78167867_78168166_78169875_78170029_78170532_78170740_78175562_78175685_78176261_78176418_78176498_78176621_78177336_78177518_78178119_78178207_78178507_78178619_78178755_78178891_78178988_78179120_78179764_78179867_78180109_78180243_78180623
6893	chr5	+	2262	9	ISM	ENSMUSG00000019494.15	ENSMUST00000019638.15	1787	10	36	-385	-2	385	intron_retention	FALSE	canonical	3	3954	junction_1	301.471288019274	91	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCATTAAAATCCTCAC	NA	False	NA	NA	False	NA	NA	NA	138159368	138163293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_138159445_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770
6894	chrX	+	3986	8	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	-37	30432	14	10073	5prime_fragment	FALSE	canonical	3	421	junction_5	81.1237402027902	266	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTGTGTGCAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	158315677	158344958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833
6897	chr19	-	2751	18	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	548.130272697788	2	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3897	False	NA	NA	False	NA	NA	NA	5345452	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341376_5345289
6898	chr16	-	3165	17	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	-23	-4	intron_retention	FALSE	canonical	0	0	junction_7	297.29130679142	95	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCAGACGTTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	3895662	3857838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871210_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
6899	chr16	-	2914	11	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	214	64	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	299.953346372398	401	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTTTTGTAAGAGTTGT	6480	False	NA	NA	False	NA	NA	NA	38370370	38345434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370305
6900	chr9	+	2897	8	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	1479	junction_4	359.044934940075	8	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAAAAAAAAGTGACAAC	1178	False	NA	NA	False	NA	NA	NA	108437667	108442760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442445_108442525
6901	chr19	+	1204	1	Intergenic	novelGene_1296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAATGAAACACACACACAC	8761	False	NA	NA	False	NA	NA	NA	57655024	57656228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_57655000_57656200
6902	chr5	+	2664	8	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	995.176366278862	18	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAACTAAGTATCTTTC	NA	False	NA	NA	False	NA	NA	NA	34493761	34510769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574_34509346_34509588
6903	chr17	+	2780	14	Antisense	novelGene_ENSMUSG00000024081.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	8	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTATTGCGAGGGCGA	NA	False	NA	NA	False	NA	NA	NA	79229124	79244514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_79229153_79229560_79229750_79229946_79230001_79230664_79230759_79231865_79231945_79233345_79233412_79233511_79233622_79234303_79234352_79236706_79236793_79238735_79238925_79239537_79239773_79242005_79243105_79243204_79243499_79244305
6904	chr13	+	4627	17	NNC	ENSMUSG00000021392.9	novel	4368	17	NA	NA	6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	42.228359842646	199	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTACCTTCATTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	49806561	49832481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813491_49814429_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
6905	chr7	-	1329	12	ISM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	29454	-2	-403	1	3prime_fragment	FALSE	canonical	3	1332	junction_2	78.1414271985616	13	12	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143124339	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278
6908	chr11	-	2476	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	380	5	-32	2	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	4529	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
6909	SIRV5	+	970	10	NNC	SIRV5A	novel	2085	17	NA	NA	0	3120	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3629.71172545101	8	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTTACATGGTTTTCGT	NA	False	NA	NA	False	NA	NA	NA	1008	6718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2223_3280_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658
6910	chr2	+	2785	10	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-3	1	intron_retention	FALSE	canonical	3	433	junction_9	646.991289272941	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116346	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119545_130119768_130119891_130120075_130120211_130120332
6912	chr9	-	3551	17	NNC	ENSMUSG00000031996.18	novel	3634	17	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	1	22	junction_13	353.489303232785	13	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8723	False	NA	NA	False	NA	NA	NA	31123103	31060852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081831_31083229_31083343_31088313_31088438_31089200_31089375_31122918
6913	chr19	-	4451	9	Fusion	ENSMUSG00000024667.13_ENSMUSG00000024668.9	novel	935	6	NA	NA	8187	8599	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	67	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCAGGTCCCGCCCCCCC	803	False	NA	NA	False	NA	NA	NA	10524913	10502629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_10502690_10503310_10503423_10509142_10509360_10509495_10510829_10512466_10512879_10514158_10514273_10516975_10517151_10518042_10518211_10523053
6914	chr16	-	3044	15	NIC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	-3	7	combination_of_known_splicesites	FALSE	canonical	3	26	junction_11	352.92972070244	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8113	False	NA	NA	False	NA	NA	NA	4867724	4831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854782_4854922_4865597_4865678_4866613_4866651_4867669
6916	chr15	-	2792	4	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1026.97711756397	4	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACACAGTGAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	38300955	38294661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296409_38296858_38297576_38297921_38298097_38300802
6919	chr1	+	3054	13	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	-2	-531	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	275.084936378243	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGAGTAGTCCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	93406740	93437451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425120_93426805_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
6920	chr9	-	1484	3	NNC	ENSMUSG00000104208.2	novel	347	2	NA	NA	337	6161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCGCAGGCGGTCATAAT	NA	False	NA	NA	False	NA	NA	NA	108215135	108208126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108208208_108212266_108212378_108213843
6921	chr4	-	2995	14	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	394.194092102508	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080463	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067880_135071874_135071981_135074045_135074169_135074425_135074516_135080407
6922	chr15	-	3383	13	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	-6	-8	intron_retention	FALSE	canonical	3	1461	junction_8	121.698026780315	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTTCCTTCGTCCTGTG	2739	False	NA	NA	False	NA	NA	NA	77855019	77843205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77849216_77850337_77850411_77850881_77850968_77851502_77852422_77852656_77852790_77854882
6925	chr3	+	4969	19	NIC	ENSMUSG00000007379.16	novel	4879	18	NA	NA	-14	-1	combination_of_known_junctions	FALSE	canonical	3	218	junction_1	23.362415738442	389	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAATTCCCACAGATC	NA	False	NA	NA	False	NA	NA	NA	103009961	103077046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
6926	chr6	+	3639	30	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	75.8051040043047	7	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGGTTTGTTCTTACT	NA	False	NA	NA	False	NA	NA	NA	116185033	116239626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116235902_116239413
6927	chr2	-	4377	19	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-4	-5	intron_retention	FALSE	canonical	3	183	junction_18	32.5096376973026	5	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTAGCTTCAGTACTGT	NA	False	NA	NA	False	NA	NA	NA	11782365	11747390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
6928	chr3	+	3325	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-4	3	intron_retention	FALSE	canonical	0	0	junction_7	279.992201057567	17	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965659	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102972968_102974048
6930	chr5	+	3813	15	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	5	4	intron_retention	TRUE	non_canonical	0	0	junction_12	88.4451865304617	55	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTTAGTAGTTTGTTGT	9204	False	NA	NA	False	NA	NA	NA	110987870	111022003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014626_111014670_111015960_111019892_111019974_111021345
6931	chr15	+	2622	19	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-5	-37	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	465.500832105978	1	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCTTAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81756703	81799297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779434_81779498_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
6932	chr11	+	3487	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	52	1	52	-1	multi-exon	FALSE	canonical	3	479	junction_6	89.534754270184	568	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTAGGCTTCTTCCTCTTT	4508	False	NA	NA	False	NA	NA	NA	97690442	97729589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
6933	chr18	-	5092	10	NNC	ENSMUSG00000056124.6	novel	5808	9	NA	NA	-23722	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	98.9522892891092	183	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTGGTGATGTCATT	NA	False	NA	NA	False	NA	NA	NA	20903183	20817658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_20821526_20821991_20822094_20822277_20822401_20825448_20825637_20833795_20833913_20839461_20839587_20853085_20853200_20861018_20861136_20878409_20878650_20903084
6934	chr5	-	1173	9	Antisense	novelGene_ENSMUSG00000019179.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGACAGCATGGCTAGGGC	NA	False	NA	NA	False	NA	NA	NA	135819230	135807600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_135807654_135812156_135812331_135813042_135813118_135814778_135814893_135815086_135815211_135816392_135816468_135818048_135818152_135818476_135818631_135818929
6935	chr9	-	4325	18	NNC	ENSMUSG00000039542.17	novel	6564	20	NA	NA	-1354	1398	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	60.4862648482622	9	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTTTGGTTGTGGAAGG	9144	False	NA	NA	False	NA	NA	NA	49481203	49414949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334_49431513_49434821_49434947_49454306_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49461839_49461870_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125
6936	chr6	-	1205	1	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	3510	1395	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTACAGCAACATTTTG	6230	False	NA	NA	False	NA	NA	NA	146464489	146463284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146463300_146464500
6937	chr7	-	2765	20	NIC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	26	junction_18	322.422487410248	12	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	143153793	143111443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143142228_143142321_143153718
6938	chr10	-	4007	15	FSM	ENSMUSG00000020097.15	ENSMUST00000092498.12	4070	15	63	0	-7	0	multi-exon	FALSE	canonical	3	155	junction_14	85.0811437417726	3	94	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	60983390	60934420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
6939	chr2	-	4837	6	FSM	ENSMUSG00000038914.16	ENSMUST00000103055.8	4613	6	-63	-161	-63	161	multi-exon	FALSE	canonical	3	159	junction_5	13.3626344707921	161	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGGCTCATCAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	180351855	180322689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
6942	chr2	+	3383	8	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	13	-1086	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	322.534478460704	85	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACAAAGAACTGGGTGGT	1949	False	NA	NA	False	NA	NA	NA	5850076	5875620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
6943	chr16	+	5301	7	ISM	ENSMUSG00000022855.10	ENSMUST00000232263.2	3702	9	4618	662	4618	-15	3prime_fragment	FALSE	canonical	3	339	junction_1	49.3538808560741	9	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAACCTAGAGTATATTC	NA	False	NA	NA	False	NA	NA	NA	21851926	21866616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
6944	chr1	+	3126	25	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	224.104510434802	540	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3066	False	NA	NA	False	NA	NA	NA	171910397	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944567_171949395
6945	chr17	+	920	1	NIC	ENSMUSG00000024369.17	novel	1607	11	NA	NA	474	-2068	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAGAATTATTTTCTCT	121	False	NA	NA	False	NA	NA	NA	35069857	35070777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35069900_35070800
6946	chr18	+	4934	4	Genic_Genomic	ENSMUSG00000056682.9	novel	1238	3	NA	NA	-82722	-963	multi-exon	FALSE	non_canonical	0	0	junction_1	0	210	66	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGCTTGCGGCGAGCGC	4985	False	NA	NA	False	NA	NA	NA	77719187	77802186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_77723020_77730758_77730889_77761593_77762383_77802003
6948	chr17	-	3199	13	NIC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	-1	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	219.742447095584	3	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACTGTGGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	29226940	29189858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
6949	chr19	-	3464	7	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	-3	intron_retention	FALSE	canonical	3	1340	junction_2	90.5704145954958	17	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATAGCTTGTCTGGAACT	6535	False	NA	NA	False	NA	NA	NA	4062697	4057505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4061273_4061345_4061429_4062550
6950	chr17	+	2918	15	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	474.229520121957	1	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4862	False	NA	NA	False	NA	NA	NA	87979958	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88015916_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
6951	chrX	-	3088	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3367	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490.564703576462	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	NA	False	NA	NA	NA	23227925	23085524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085583_23085818_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23150798_23150912_23181368_23181441_23227732
6952	chr1	+	2994	3	NIC	ENSMUSG00000053332.14	novel	2556	4	NA	NA	0	-2	intron_retention	FALSE	canonical	3	4541	junction_2	514	34	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGAACTGTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160865608_160865794_160865843_160866026
6954	chrX	-	3611	10	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	-5	intron_retention	FALSE	canonical	3	8	junction_7	590.830008348791	7	57	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTGTAAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	100128978	100122832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126253_100126400_100126575_100126753_100128585_100128877
6955	chr8	-	4071	16	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-48	-893	intron_retention	FALSE	non_canonical	0	0	junction_1	371.468939930828	4	105	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTCAAAAGATTCGAGAA	NA	False	NA	NA	False	NA	NA	NA	86026146	85987913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85988922_85989003_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
6956	chr11	+	2010	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4054.90411230648	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3041	False	NA	NA	False	NA	NA	NA	75623744	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623875_75642699_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
6957	chr3	+	5787	15	NIC	ENSMUSG00000027951.17	novel	5909	15	NA	NA	31	-13	combination_of_known_junctions	FALSE	canonical	3	43	junction_7	26.0458778907919	178	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGAAGCATCAGGACTGT	NA	False	NA	NA	False	NA	NA	NA	89622359	89660740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89622458_89642148_89643581_89645296_89645481_89646476_89646626_89647139_89647279_89647400_89647586_89652682_89652831_89653126_89653299_89653871_89653966_89654478_89654602_89654844_89654979_89656943_89657127_89657542_89657656_89657934_89658063_89658235
6958	chr7	-	2846	21	NIC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	-8	intron_retention	FALSE	canonical	3	1234	junction_20	95.6375841392912	1184	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACGGTGAGGTCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	143153793	143111451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
6959	chrX	-	4233	9	ISM	ENSMUSG00000031297.15	ENSMUST00000138162.2	2717	11	33	12	0	0	intron_retention	FALSE	canonical	3	1326	junction_3	67.5341348874775	8	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	100128978	100122827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753
6960	chrX	+	2815	19	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	65	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	202.910732668577	18	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799488	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810807_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
6961	chr8	-	4022	21	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	121.412303742248	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAGCTGGCATGTGTCG	8150	False	NA	NA	False	NA	NA	NA	120285465	120234895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260205_120265567_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
6962	chr5	-	4658	14	FSM	ENSMUSG00000029192.18	ENSMUST00000140607.8	4649	14	-9	0	2	0	multi-exon	FALSE	canonical	3	13	junction_13	26.7829319490414	140	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGTTCACTGTGTACTT	9521	False	NA	NA	False	NA	NA	NA	36739145	36647951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639_36729382_36739030
6963	chr16	-	2901	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	26	71	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	301.865930505581	105	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAAGAGTTGTACTTGGT	6292	False	NA	NA	False	NA	NA	NA	38370558	38345427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38354952_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
6964	chr16	+	2783	26	Fusion	ENSMUSG00000022681.16_ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	-3	multi-exon	TRUE	canonical	3	20	junction_17	251.545005118368	117	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAATTTGTTTAGATGACT	NA	False	NA	NA	False	NA	NA	NA	13598608	13653309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
6965	chr10	-	3193	11	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	32	194	10	-178	intron_retention	FALSE	canonical	3	1924	junction_2	84.2508753663723	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358223	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786
6966	chr17	+	935	2	NNC	ENSMUSG00000024301.11	novel	819	3	NA	NA	3	-3112	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGGTCACCTGTGAGGA	NA	False	NA	NA	False	NA	NA	NA	27136097	27137370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27136260_27136597
6967	chr17	-	2801	11	NNC	ENSMUSG00000079553.12	novel	2357	11	NA	NA	1678	-5	intron_retention	FALSE	canonical	1	5	junction_10	191.480573427176	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTAATCTTTTTCTTGTT	9181	False	NA	NA	False	NA	NA	NA	34107835	34094646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34107193
6968	chr3	+	4596	24	Fusion	ENSMUSG00000097532.3_ENSMUSG00000015522.19	novel	2825	18	NA	NA	-306	-24	multi-exon	FALSE	canonical	0	0	junction_13	105.041786626172	1	38	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAAGTATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	95334675	95404524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_95334711_95335864_95336134_95337628_95337750_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
6969	chrX	-	2854	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	-6	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	10	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAAACAAGCATTAATTG	NA	False	NA	NA	False	NA	NA	NA	93256263	93232325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233428_93234155_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
6971	chr5	+	2831	13	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_4	273.923600459852	104	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815928	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
6973	chrX	-	3870	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	838	-7	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_8	148.257910963514	36	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAATTGATACTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	59223611	59101325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59126519_59126598_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
6974	chr12	+	2211	9	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-54	intron_retention	FALSE	canonical	3	5416	junction_8	454.781540962251	11	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
6975	chr8	-	3642	14	NNC	ENSMUSG00000033596.6	novel	4443	13	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.5989353023	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCAGTGTCTTCCGCCTG	5520	False	NA	NA	False	NA	NA	NA	112026830	111997575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111997783_111998559_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
6976	chr5	+	3765	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	336.821911401263	1	104	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815925	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822301_33822502_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069_33829130_33829325
6977	chr2	+	4254	15	Antisense	novelGene_ENSMUSG00002074852.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	201	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCTCTCGCGAGATCCG	NA	False	NA	NA	False	NA	NA	NA	73646861	73722946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_73649493_73653544_73653657_73658821_73659022_73660134_73660286_73672703_73672793_73675783_73675898_73676540_73676719_73680931_73681062_73681207_73681330_73684141_73684238_73693514_73693585_73700969_73701030_73704013_73704090_73710628_73710726_73722818
6978	chr18	+	3526	17	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	0	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	448.485746533544	1	76	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAAGTCCATTAAGAAC	NA	False	NA	NA	False	NA	NA	NA	35285651	35387805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356570_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
6979	chr19	+	3357	11	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	-7	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	244.4566219189	4	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAAGAATGTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	10160295	10174231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10171039_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
6980	chr15	+	2892	13	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	63	-599	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	313.943587908543	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCAAAGAACGATTGAGC	NA	False	NA	-31	True	NA	NA	NA	101982361	102005009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001615_102003421_102003485_102003704
6981	chr15	-	3153	11	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	247.051998575199	37	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTTTGAGCTATAATGT	NA	False	NA	NA	False	NA	NA	NA	83033537	83010180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83010884_83010938_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
6982	chr4	-	3263	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-75	-15	combination_of_known_splicesites	FALSE	canonical	2	7	junction_8	525.413036929043	305	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATATGTTCTTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	141325610	141303387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325291
6983	chr7	-	4272	19	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	7	-2	intron_retention	FALSE	non_canonical	0	0	junction_17	428.852117738608	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143153810	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140932_143142228_143142321_143153718
6984	chr11	-	2797	17	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	16	2	at_least_one_novel_splicesite	FALSE	canonical	1	42	junction_5	429.498794927006	2536	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239103	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201041_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
6986	chr7	-	3105	22	NIC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	0	1	intron_retention	FALSE	canonical	3	290	junction_20	343.696096577661	1189	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153793	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
6987	chr1	-	3109	21	NIC	ENSMUSG00000026442.15	novel	4927	32	NA	NA	-7	-22	combination_of_known_junctions	FALSE	canonical	2	5	junction_20	5.90148286450109	30	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATGTTCTAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	132669508	132527594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_132527953_132529708_132529932_132531535_132531607_132532778_132532977_132533221_132533324_132534740_132534786_132536120_132536246_132537494_132537643_132538048_132538216_132538512_132538625_132539267_132539412_132547126_132547259_132548662_132548848_132549249_132549362_132559422_132559594_132561905_132562029_132562361_132562559_132564723_132564830_132570415_132570597_132593216_132593326_132669408
6988	chrX	+	3711	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	121	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	183.87833764627	1	116	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799544	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810901_150811118_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
6989	chr19	+	3564	26	NNC	ENSMUSG00000024974.11	novel	4851	29	NA	NA	30	346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	224.057299814132	10	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGCTTTCAGTTACTAG	NA	False	NA	NA	False	NA	NA	NA	53588858	53633585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629719_53633215
6991	chr6	-	2776	7	NIC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	4	-6	combination_of_known_splicesites	FALSE	canonical	3	10	junction_5	1027.03576968975	2033	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTTGTCTCATGACT	NA	False	NA	NA	False	NA	NA	NA	148847937	148822560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148843385_148843521_148847789
6996	chrX	-	3363	9	NIC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	-5	intron_retention	FALSE	canonical	3	1250	junction_8	92.3566456731729	12	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAAAACCTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	100128978	100122820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126253_100126396_100126575_100126753_100127881_100128877
6997	chr6	-	2746	10	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	261.077870224551	317	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTATTACTTGTCCATT	NA	False	NA	NA	False	NA	NA	NA	72416541	72409776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72411195_72411257_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
6998	chr2	+	1095	1	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-530	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTTGTTGTATGCTGT	6858	False	NA	NA	False	NA	NA	NA	130284556	130285651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130284600_130285700
7000	chr10	-	3592	19	NNC	ENSMUSG00000037012.19	novel	3639	20	NA	NA	452	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	175.232614361033	36	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGTCGGAGTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	62175869	62104887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127753_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151279_62175791
7002	chr18	-	2457	14	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	38	-226	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2302.21645196884	20	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGATCTCCTTTGTGAA	237	False	NA	NA	False	NA	NA	NA	35087372	35070692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35072407_35072491_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
7003	chr6	-	3663	19	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	1	4	intron_retention	FALSE	canonical	3	759	junction_15	55.6755371065135	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTACGGGGGCTGACTGGT	7906	False	NA	NA	False	NA	NA	NA	124806397	124791996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
7004	chr14	-	2473	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-51	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1725.1813288127	2	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTATTGCTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	36857280	36842778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855668_36855723_36855761_36857151
7005	chr8	-	3359	8	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	818.335194034766	9060	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGACTAATTGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	94763642	94742126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743926_94745556_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
7006	chr5	-	3044	11	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	-14	-494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.58776800174	20	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGAAAGTTTTACTGGT	NA	False	NA	NA	False	NA	NA	NA	4154435	4131638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4132799_4132880_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
7007	chr6	-	3769	14	NNC	ENSMUSG00000040669.15	novel	3612	14	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	437.900207485651	1	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGATGAAAGTTGGCCT	9127	False	NA	NA	False	NA	NA	NA	122316566	122294712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310395_122311024_122311110_122311927_122312043_122313816_122313975_122316460
7008	chrX	+	2828	20	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-731	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	197.498904236239	2	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAGGAGCCTAATCTA	NA	False	NA	NA	False	NA	NA	NA	150799449	150844959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810734_150819190_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
7013	chr6	+	4878	19	Intergenic	novelGene_4193	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	136	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGATCGCACCTATCAGAG	NA	False	NA	NA	False	NA	NA	NA	82702010	82751316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_82702548_82703066_82704436_82705692_82705925_82706524_82706680_82707746_82707929_82708023_82708128_82709080_82709178_82711828_82711951_82712229_82712377_82713510_82713818_82715268_82715502_82716499_82716654_82719781_82719964_82720236_82720346_82720923_82721022_82721842_82721961_82726167_82726321_82737086_82737246_82750896
7014	chr8	-	3833	8	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	818.335194034766	9109	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAATTGTTTGGGATAT	NA	False	NA	NA	False	NA	NA	NA	94763642	94742123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743929_94745088_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
7015	chr12	+	3340	1	FSM	ENSMUSG00000021908.11	ENSMUST00000022467.11	1878	1	-46	-1416	-46	1416	mono-exon	FALSE	NA	NA	NA	NA	NA	892	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119224666	119228006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_119224700_119228000
7016	chr14	+	3017	4	ISM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	-14	-28	-14	6	intron_retention	FALSE	canonical	3	776	junction_1	5669.1234086252	351	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTACACGTCTGCTCTGC	NA	False	NA	NA	False	NA	NA	NA	24540820	24545919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450
7017	chr15	+	2673	19	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	465.500832105978	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797339_81797404_81797499_81797880_81798014_81798438_81798561_81798828
7018	chr5	+	1911	9	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1421.862241701	99	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	750	False	NA	NA	False	NA	NA	NA	77099617	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104571_77107209_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114212_77114494
7019	chr4	-	2399	6	NNC	ENSMUSG00000066000.13	novel	2558	5	NA	NA	-6	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	209.867196102678	21	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147726976	147696396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697593_147697761_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
7020	chr10	-	4450	29	Antisense	novelGene_ENSMUSG00000039994.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	323	10	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCGCGGGCGGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	128088808	128067946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128068044_128075701_128075866_128076005_128076158_128076245_128076362_128076456_128076519_128077140_128077244_128077450_128077611_128078180_128078311_128078497_128078588_128079063_128079239_128079936_128080153_128080302_128080411_128080528_128080697_128081952_128082079_128082175_128082329_128083020_128083120_128083206_128083326_128083443_128083645_128084228_128084376_128085214_128085300_128085387_128085509_128085594_128085679_128085835_128085979_128086152_128086330_128086412_128086483_128086561_128086679_128087532_128087751_128087856_128087956_128088058
7021	chr6	-	4310	18	NIC	ENSMUSG00000029924.13	novel	2878	16	NA	NA	-14	3	combination_of_known_junctions	FALSE	canonical	3	23	junction_15	99.4312546157579	286	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGCCCTTAAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	39354623	39311703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39349012_39349072_39349780_39349862_39354552
7022	chr1	-	2256	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2592.84283447449	11	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287099	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86284722_86284810_86285118_86285828_86285946_86286927
7023	chr8	-	3558	8	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	18	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	574.020087823144	52	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTGCTGTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	125589735	125563686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125587772_125587969_125588011_125589623
7025	chr3	+	4110	21	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	10	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	5533.89982991199	2	163	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTACTGATTTTTGAGAC	NA	False	NA	NA	False	NA	NA	NA	102927945	102965478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947057_102947104_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954120_102954242_102954329_102954499_102956939_102957049_102957624_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
7028	chr10	-	4656	10	NIC	ENSMUSG00000020097.15	novel	4070	15	NA	NA	9	1592	intron_retention	FALSE	canonical	3	155	junction_9	98.7290843610201	1	161	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGGAATTTTAACTACCT	NA	False	NA	NA	False	NA	NA	NA	60983444	60938381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_60938494_60938899_60941300_60942043_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
7029	chr1	-	3129	9	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.661437827766148	21	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCCGCTCTACCGGGTC	NA	False	NA	NA	False	NA	NA	NA	87167976	87141685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87141742_87147302_87147416_87148639_87148775_87152072_87152178_87153569_87153723_87153816_87153953_87160121_87160203_87165566_87167788_87167847
7030	chr12	+	3224	2	Genic_Genomic	ENSMUSG00000021908.11	novel	1878	1	NA	NA	-15	1431	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119224697	119228021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_119226320_119226419
7031	chr10	+	2659	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	2	1	intron_retention	FALSE	non_canonical	0	0	junction_10	588.938357461024	2	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCTGCCTGTCATTGGG	1563	False	NA	NA	False	NA	NA	NA	79690440	79700267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698284_79698376_79698486_79698666_79699132
7032	chr11	-	4350	25	NNC	ENSMUSG00000004040.17	novel	6042	24	NA	NA	10	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	139.94015958219	6	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACTGTCTGGCAGTGGG	NA	False	NA	NA	False	NA	NA	NA	100830295	100777645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100778688_100778722_100779587_100780303_100780367_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
7033	chr5	+	3286	28	NNC	ENSMUSG00000029176.14	novel	3854	28	NA	NA	-1	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	90.8286195779212	22	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTGTGTATCAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	52991466	53024041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013284_53013557_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
7034	chr2	+	4000	18	NIC	ENSMUSG00000027363.16	novel	4154	19	NA	NA	0	17	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	96.2776406183958	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGTCTTCTTTTTT	3593	False	NA	NA	False	NA	NA	NA	126549279	126601234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_126549408_126559914_126560085_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
7035	chr11	+	5191	25	ISM	ENSMUSG00000020741.18	ENSMUST00000092915.12	5379	26	6907	9	6592	-9	3prime_fragment	TRUE	canonical	0	0	junction_11	70.9590917947329	379	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCTGCTGCCCCAGCCT	NA	False	NA	NA	False	NA	NA	NA	74547247	74561664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
7036	chr14	+	5117	21	NNC	ENSMUSG00000021823.11	novel	5267	21	NA	NA	107	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	65.730206146033	3	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGCTCTAATTGAGGTTA	NA	False	NA	NA	False	NA	NA	NA	20979572	21083741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20979757_21017605_21017677_21032641_21032793_21033435_21033545_21035694_21035769_21037016_21037187_21045079_21045171_21045912_21046061_21051198_21051353_21053162_21053339_21057181_21057373_21058928_21059129_21060105_21060235_21064978_21065129_21069347_21069457_21070546_21070850_21072070_21072196_21074173_21074360_21079243_21079448_21079849_21079955_21081654
7037	chr1	+	3111	14	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	1	0	intron_retention	FALSE	canonical	3	1434	junction_3	218.380347859786	38	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724144	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
7038	chr5	-	3040	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	3	68	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGTCGGCGGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	135963453	135937267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939735_135940209_135940506_135963176
7039	chr10	-	3642	25	NNC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	5	-154	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	108.400363878028	7	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGCTTTTGAAAATTGC	NA	False	NA	NA	False	NA	NA	NA	62628044	62580394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616369_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
7040	chr19	+	4055	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	10	-113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1067.34802765086	1	176	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCACAGCCCTTTTGTC	640	False	NA	NA	False	NA	NA	NA	10582960	10607070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589098_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599343_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605037_10605146_10605229_10605788_10605913_10606442
7042	chr17	-	7100	14	FSM	ENSMUSG00000024122.17	ENSMUST00000102927.10	7161	14	59	2	17	1	multi-exon	FALSE	canonical	3	123	junction_7	13.9033008723802	201	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGTTTGCCATGGAGC	NA	False	NA	NA	False	NA	NA	NA	24360510	24292655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24298117_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
7045	chr6	-	3383	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	0	4	0	-3	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	2	90	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAACTGTGTCTATTAC	NA	False	NA	NA	False	NA	NA	NA	72416539	72409785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
7047	chr18	+	3221	8	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	657.954343679975	6	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	67908045	67928557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921840_67924933_67925085_67926219
7048	chr1	-	2158	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2659.69791628996	35	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287091	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278410_86278716_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285160_86285857_86285946_86286927
7049	chr19	-	3305	21	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	88	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACAATAGTGCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	10607186	10590254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10590394_10591469_10591547_10592208_10592329_10592845_10592962_10596413_10596489_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600799_10600889_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604149_10604518_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439
7050	chr13	-	2492	8	NIC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-23	0	intron_retention	FALSE	canonical	3	2476	junction_5	487.475964870608	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTTGCCCTTTTGACTG	NA	False	NA	NA	False	NA	NA	NA	100922933	100915239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
7051	chr9	-	3351	20	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6367	37231	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	5024	False	NA	NA	False	NA	NA	NA	21316649	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299403_21299446_21299818_21300049_21300600_21300780_21303590_21303737_21305488_21305586_21306125_21306236_21306663_21306761_21307311_21307425_21307509_21307621_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21314431_21314798_21315355_21315486_21315989
7052	chrX	-	3431	9	NNC	ENSMUSG00000036782.14	novel	3216	7	NA	NA	-3733	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	486.705361974778	2	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	NA	False	NA	NA	NA	23185151	23085524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23150798_23150912_23181368_23181441_23184851
7054	chr18	+	3171	25	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	269.216297668911	12	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	8992	False	NA	NA	False	NA	NA	NA	32970305	32999453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974201_32974953_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32986833_32987041_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
7055	chr12	-	4393	22	NNC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	7181	271374	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	91	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGTTGATGACGTCTTG	NA	False	NA	NA	False	NA	NA	NA	31977621	31704878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31704982_31710714_31710853_31715460_31715520_31719766_31719827_31720316_31720382_31735648_31735772_31810844_31810974_31840842_31841009_31851978_31852099_31852408_31852481_31870121_31870206_31883180_31883410_31887191_31887354_31889751_31889854_31919415_31919527_31920068_31920132_31936201_31936304_31943964_31944206_31950893_31950970_31969646_31969770_31970545_31970631_31975641
7056	chr10	-	2776	10	NIC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	-182	intron_retention	FALSE	canonical	3	625	junction_9	451.084317759324	25	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCAGGGTTCCTATTAC	NA	False	NA	NA	False	NA	NA	NA	127358270	127353189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356976_127358156
7057	chr5	+	3207	21	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	-32	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	158.326711265029	4	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGAAACTGCATCATTCC	NA	False	NA	NA	False	NA	NA	NA	45827228	45857453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828472_45829614_45829844_45831699_45831854_45832117_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
7058	chr14	-	4261	25	FSM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	-4	3	-4	-3	multi-exon	FALSE	canonical	1	98	junction_11	68.6814304516795	305	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATTTGTCTTGCTATGG	NA	False	NA	NA	False	NA	NA	NA	47514293	47478403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
7059	chr1	+	4543	17	Antisense	novelGene_ENSMUSG00000041303.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	302	53	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGACGCCTAGGAGAGAC	NA	False	NA	NA	False	NA	NA	NA	54435171	54478130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_54437161_54438286_54438440_54442668_54442802_54444142_54444329_54444994_54445234_54455042_54455177_54455878_54455979_54456812_54457021_54458541_54458714_54459554_54459689_54463161_54463315_54466557_54466725_54467920_54468113_54469657_54469779_54473207_54473397_54476989_54477105_54477972
7060	chr6	+	2876	24	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	255.749079533866	12	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTATACTCAAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	87864909	87889512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87874964_87879197_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
7061	chr12	+	3135	11	NIC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-9	-399	intron_retention	FALSE	canonical	3	2594	junction_7	176.150390291932	27	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	NA	False	NA	NA	NA	17316586	17334372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
7063	chr9	+	2906	21	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	1	intron_retention	FALSE	canonical	3	468	junction_2	40.2597814201717	268	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCTCTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	108385254	108393136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390396_108390484_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
7064	chr9	-	3112	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-23	3	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	24	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854079	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
7065	chrX	+	3135	8	NNC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	35	-1931	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	905.021930053383	1401	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGAAGAATAATGGTTTTT	5382	False	NA	NA	False	NA	NA	NA	158155208	158170993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403_158170383_158170453
7066	chr2	-	2321	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-9	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.89006308701	26	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGATGGCTAAAAGCTGG	NA	False	NA	NA	False	NA	NA	NA	154916376	154901244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154901946_154902111_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
7067	chr11	+	3601	12	FSM	ENSMUSG00000059248.14	ENSMUST00000093907.11	3616	12	3	12	3	0	multi-exon	FALSE	canonical	3	27	junction_1	260.952736292441	1118	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	3701	False	NA	NA	False	NA	NA	NA	117090489	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117090600_117109700_117109758_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
7068	chrX	-	2822	2	Genic_Genomic	ENSMUSG00000083327.2	novel	2406	1	NA	NA	-180	559	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAATAATAAG	NA	False	NA	NA	False	NA	NA	NA	103392020	103388875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_103391026_103391348
7069	chr9	-	4295	23	NNC	ENSMUSG00000032480.18	novel	4441	23	NA	NA	-4	-14	intron_retention	FALSE	non_canonical	0	0	junction_13	189.28397595602	1	75	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTATCCCTTGTGAGTG	NA	False	NA	NA	False	NA	NA	NA	109946494	109913404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917677_109917726_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926264_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944651_109946425
7070	chr12	-	2812	5	Intergenic	novelGene_4323	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	21.2058364607483	3	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACTCCTTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	22302709	22291531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_22292923_22292999_22294077_22295404_22295466_22295667_22295795_22302553
7071	chr19	-	4794	23	NIC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	-1	1	combination_of_known_junctions	FALSE	canonical	3	145	junction_22	86.8173369782787	234	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTTCCTCGTGAGCCTT	NA	False	NA	NA	False	NA	NA	NA	3625738	3504931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3528277_3528365_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
7072	chr2	-	5022	18	NNC	ENSMUSG00000025815.14	novel	3852	18	NA	NA	-23	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.9680608601113	127	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTACTCAAATTTCTT	NA	False	NA	NA	False	NA	NA	NA	5947577	5900898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5902340_5902855_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947268
7073	chr16	+	3403	17	NNC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	1	24	junction_14	172.38618301288	10	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTCGATAAAGGTAACTG	1088	False	NA	NA	False	NA	NA	NA	93629122	93672953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667905_93668141_93670124_93670283_93671646
7074	chr8	+	3653	20	NIC	ENSMUSG00000018796.14	novel	3897	21	NA	NA	4	-13	combination_of_known_junctions	FALSE	canonical	2	23	junction_1	91.0183385375634	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTGAGTGGAGAATGTC	2210	False	NA	NA	False	NA	NA	NA	46924077	46989075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_46924268_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
7075	chr18	+	2837	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	207.213705745473	4	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGATATTAAAAAGAAATCA	9061	False	NA	NA	False	NA	NA	NA	32970374	32999436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996314_32997753_32997894_32998905_32999031_32999290
7077	chr8	-	5465	12	FSM	ENSMUSG00000004319.16	ENSMUST00000093490.9	5518	12	42	11	-14	-11	multi-exon	FALSE	canonical	3	96	junction_11	42.8184713366008	246	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAAAGTGTGGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	61436292	61363433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
7078	chr1	+	4179	20	NIC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	0	1	intron_retention	FALSE	canonical	3	464	junction_5	75.3393798797469	5	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	322	False	NA	NA	False	NA	NA	NA	72346585	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72422614_72422860_72422929_72433054_72433127_72433866
7079	chr11	-	1857	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	156	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644385	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48643863_48644007
7080	chr14	-	2783	12	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	-11	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	294.161169069661	13	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGTGGCTTGTGAGAAA	6419	False	NA	NA	False	NA	NA	NA	66071368	66056479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66068784_66068845_66069244_66070112_66070191_66071250
7081	chr11	-	3700	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	212	0	intron_retention	FALSE	canonical	3	150	junction_3	570.471345078397	1	103	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714622	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96714383
7082	chr9	-	4945	36	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	-5533	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	52.2176449964913	11	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATATACAACCTGTGTGG	9851	False	NA	NA	False	NA	NA	NA	21750456	21711486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714422_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21740769_21740875_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438
7083	chr5	-	3692	16	NIC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	-13	-12	intron_retention	FALSE	canonical	3	1165	junction_7	292.328460620735	24	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAATAAAACCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	122959370	122925533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
7084	chr4	+	3427	6	NNC	ENSMUSG00000028676.18	novel	3754	6	NA	NA	-52	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	623.730198082472	624	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAAAAATCTTG	4634	False	NA	NA	False	NA	NA	NA	135583370	135597204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135594436
7085	chr2	+	4693	13	NNC	ENSMUSG00000033411.17	novel	5053	13	NA	NA	0	-4	intron_retention	FALSE	canonical	3	27	junction_8	140.29341771999	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACATATGCTCTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	121786966	121843092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121827912_121828338_121834381_121834445_121834548_121834629_121837343_121838298_121841043
7088	chr15	+	2433	17	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	4	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.803780328266	1	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATCCATATCTATT	NA	False	NA	NA	False	NA	NA	NA	81756688	81799312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773501_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796598_81797890_81798014_81798438_81798548_81798929
7089	chr11	+	6253	18	FSM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	3	-1	3	1	multi-exon	TRUE	canonical	3	95	junction_9	15.4083965785252	223	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAATGTTTGTGTTTCT	1979	False	NA	NA	False	NA	NA	NA	54329027	54409062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_54329215_54356912_54357040_54366457_54366593_54371075_54371177_54371435_54371511_54373320_54373413_54378537_54378622_54380094_54380167_54381628_54381765_54384018_54384221_54387427_54387514_54390236_54390384_54391345_54391516_54393084_54394502_54395563_54395733_54400707_54400906_54404195_54404312_54406323
7090	chr19	+	2986	2	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	9060	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	44291574	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44292469_44293203
7091	chr10	+	3376	14	NIC	ENSMUSG00000037608.17	novel	3231	13	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	323.935525764111	212	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	2793	False	NA	NA	False	NA	NA	NA	20188217	20216010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20208141_20208304_20209137_20209319_20210244_20210392_20215454_20215668_20215797
7092	chr3	+	4971	19	NNC	ENSMUSG00000007379.16	novel	4979	19	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.0363723196225	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCACATAAGATGTGT	4728	False	NA	NA	False	NA	NA	NA	103034882	103077083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103034941_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
7093	chr1	-	2785	16	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	851.916777364759	2	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287426	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276253_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
7094	chr16	+	4216	9	NNC	ENSMUSG00000022849.6	novel	4680	9	NA	NA	-1	-454	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	249.638457323787	1865	41	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAATGTGTGAGAATGTT	5435	False	NA	NA	False	NA	NA	NA	35590775	35648393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634414_35634699_35634780_35637521_35637694_35639048_35639133_35645058_35645170_35645252
7095	chrX	-	3755	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	45	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	183.815463352445	121	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGAGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	149800273	149766138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767564_149768471_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
7097	chr18	+	3030	20	NNC	ENSMUSG00000003779.17	novel	3107	19	NA	NA	-8	-3	intron_retention	FALSE	canonical	0	0	junction_1	316.74900713026	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	6241	False	NA	NA	False	NA	NA	NA	34758051	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758220_34758317_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
7099	chr8	-	2329	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	7	1	7	-1	multi-exon	FALSE	canonical	3	3119	junction_12	186.058007680998	3695	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTACTTGGCTTCACTG	NA	False	NA	NA	False	NA	NA	NA	26337715	26306904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
7100	chr8	+	3841	5	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-15	-1	intron_retention	FALSE	canonical	3	972	junction_1	49.469687688523	83	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAAATGTGTATGAGT	NA	False	NA	NA	False	NA	NA	NA	86026536	86034698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
7101	chr16	-	2307	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	10	565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	810.268374988295	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAACTTGTTTTTACAAA	NA	False	NA	NA	False	NA	NA	NA	22084745	22064632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067218_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
7102	chr13	+	2326	9	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	7	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGACTCACCCTAGTGACC	NA	False	NA	NA	False	NA	NA	NA	100915246	100922879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916296_100916530_100916639_100917278_100917423_100917663_100917903_100918132_100918291_100919971_100920154_100921962_100922124_100922236_100922412_100922769
7103	chr16	-	2935	5	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	36984	-7	2299	0	3prime_fragment	TRUE	canonical	3	940	junction_4	75.1664818918645	44	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCAACCTGCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	22218280	22200058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069
7104	chr3	-	3376	27	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_26	169.899082472072	5	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	100069661	100045495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069598
7105	chr19	+	4217	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	-14	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	898.70938691558	1	229	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATTGGTCTCTGCTTTT	616	False	NA	NA	False	NA	NA	NA	10582936	10607187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584354_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604604_10604852_10605023_10605125_10605229_10605788_10605913_10606442
7107	chr7	+	4192	28	NIC	ENSMUSG00000034867.17	novel	4284	29	NA	NA	6	-8	combination_of_known_junctions	FALSE	canonical	2	12	junction_20	54.7169546878799	3	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCGATTGTGTCGTGCCA	NA	False	NA	NA	False	NA	NA	NA	35285707	35338643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
7108	chr8	+	2675	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	-13	-9	-13	4	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	20	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	NA	False	NA	NA	NA	75836238	75854325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
7109	chr5	+	2135	15	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1163.14735760788	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588_129874854_129874917
7110	chr11	-	2560	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.815131191409	157	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239139	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191368_75191691_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
7111	chr5	+	2115	9	NIC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	67	junction_2	1104.52453005807	562	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	756	False	NA	NA	False	NA	NA	NA	77099623	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77099683_77104392_77104694_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
7112	chr1	-	3207	8	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.699854212223765	203	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTAAGGGCCCGGCTACTT	NA	False	NA	NA	False	NA	NA	NA	87167969	87141661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87141742_87147302_87147416_87148639_87148775_87152072_87152178_87153569_87153723_87153816_87153953_87160121_87160204_87165566
7113	chr19	-	2526	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	1552	0	-21	0	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	2906	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5038	False	NA	NA	False	NA	NA	NA	53027093	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
7114	chr10	+	2595	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	-42	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	618.176192970544	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41395454	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667_41405340_41405615
7115	chr5	+	2119	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1203.87364431625	42	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGCTACTGGATCATT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129866981_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
7116	chr19	+	3892	10	NIC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	1	-5	intron_retention	FALSE	canonical	0	0	junction_8	299.406119996499	4	80	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGATTTTTGTTGTGATT	29	False	NA	NA	False	NA	NA	NA	46064452	46072895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46069862_46069979_46070116_46070686_46070816_46070954_46072066_46072189_46072283_46072450
7117	chr16	+	2861	9	FSM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	11	-1	11	1	multi-exon	FALSE	canonical	1	126	junction_1	222.417084269622	1983	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCTATTTGTGAGCATT	NA	False	NA	NA	False	NA	NA	NA	38383184	38412525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
7118	chrX	+	2998	19	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	45	-727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	196.300577346748	28	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	NA	False	NA	NA	NA	150799468	150844963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830022_150844863
7119	chr1	-	4743	15	NNC	ENSMUSG00000026478.15	novel	7622	28	NA	NA	-3419	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	378.237568418666	500	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATATCTTGTGTGGCCT	8653	False	NA	NA	False	NA	NA	NA	153118491	153094672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_153097476_153099404_153099505_153102129_153102289_153103256_153103457_153104480_153104596_153104787_153104938_153106342_153106389_153106467_153106613_153107479_153107618_153109230_153109311_153110193_153110400_153114995_153115158_153116062_153116242_153117622_153117766_153118374
7123	chr10	-	3156	22	NNC	ENSMUSG00000020124.11	novel	11525	22	NA	NA	-6	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	145.354941288269	6	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGTTTTGATGAATTAT	NA	False	NA	NA	False	NA	NA	NA	123032864	122949148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011838_123017631_123017706_123032731
7124	chr1	+	4720	12	NIC	ENSMUSG00000026554.16	novel	2754	14	NA	NA	0	-10	intron_retention	FALSE	canonical	3	418	junction_1	57.1886829236822	1	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGACTGCTGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	171975684	172023946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172015028_172016505_172016637_172020084_172020205_172021351
7125	chr11	+	3105	13	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCAAGGTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	106545098	106615235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106545991_106562568_106562625_106570374_106570436_106573704_106573788_106575045_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588180_106590416_106590714_106605828_106606013_106615210
7129	chr6	-	3178	18	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	3	590	junction_13	48.4240210344906	1309	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6217232	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
7130	chr7	+	2503	2	NNC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	698	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	448	False	NA	NA	False	NA	NA	NA	44468558	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44468741_44477910
7131	chr18	-	2088	9	ISM	ENSMUSG00000024587.11	ENSMUST00000236873.2	2482	14	7165	0	2563	0	3prime_fragment	FALSE	canonical	3	4499	junction_3	158.511632065284	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64642385	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315
7132	chr11	-	2852	13	NNC	ENSMUSG00000020717.20	novel	3006	15	NA	NA	-9009	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	644.583371040723	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTACTCTTCAGTTAT	415	False	NA	NA	False	NA	NA	NA	106615229	106545057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106590417_106590712_106605829_106606011_106615168
7133	chr16	-	3947	15	NNC	ENSMUSG00000052459.14	novel	4234	15	NA	NA	-4	-9	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_14	112.129662554071	6	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTAACTTTTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	43959385	43905773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959319
7134	chr2	+	3215	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5573	1847	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	489.250674217443	64	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAACAGAAATATCTGTG	NA	False	NA	NA	False	NA	NA	NA	174846460	174862888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174846551_174858430_174858558_174858749_174858811_174859951
7135	chr4	+	2359	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	6	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	181.304682110259	2	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146093399	146135321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535_146132075_146132161_146132721_146132891_146133561_146135183
7137	chr1	+	3498	11	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-10	-244	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	271.028799207759	7	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTTTTCTGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	167177549	167195857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183765_167184098_167184804_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
7138	chr8	+	1098	8	Antisense	novelGene_ENSMUSG00000088054.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCCGGCGGGGGCGTGGC	NA	False	NA	NA	False	NA	NA	NA	13226965	13250617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_13227143_13229322_13229509_13229582_13229759_13236885_13236992_13239629_13239740_13242154_13242209_13250048_13250200_13250479
7139	chr11	-	3247	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	0	1946	0	1425	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	632	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGCTGCTTTGACTT	NA	False	NA	NA	False	NA	NA	NA	106107170	106090179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
7141	chr9	-	3823	18	NIC	ENSMUSG00000032480.18	novel	3806	19	NA	NA	5	0	intron_retention	FALSE	canonical	3	264	junction_17	80.6220195393422	2	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109930101	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
7142	chr9	+	3989	22	NIC	ENSMUSG00000032267.9	novel	4133	24	NA	NA	-13	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	282.728301584767	4	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTAGCATGACCCTT	NA	False	NA	NA	False	NA	NA	NA	48896700	48953809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48944876_48944973_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
7143	chr5	+	2702	4	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCGAAGATGGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	31312375	31337253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31314737_31331382_31331436_31331577_31331839_31337226
7144	chr4	+	4259	15	NIC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	19	0	intron_retention	FALSE	canonical	3	650	junction_4	52.6940050030865	15	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTGTGTTCGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	124923803	124949173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
7145	chr14	-	3083	8	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	4	intron_retention	FALSE	canonical	3	157	junction_7	1602.25482698984	94	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCTCCAAAATAATCTCT	8749	False	NA	NA	False	NA	NA	NA	52341461	52312251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52319361_52321571_52321849_52334778_52336002_52341345
7146	chr4	+	4578	11	NIC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	-36	915	intron_retention	FALSE	canonical	3	54	junction_1	20.2852162916741	65	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTCTCTGAGTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	148123579	148141578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_148123867_148126040_148126287_148127881_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
7147	chr5	-	3863	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	-27	-36	-27	36	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	456	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTCAATCTTAAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	108280513	108269456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
7148	chr15	-	3479	15	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	39	-364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	201.859872593008	962	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	51855104	51825999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831790_51831863_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
7149	chr10	+	2640	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	3	0	intron_retention	FALSE	canonical	3	717	junction_1	89.5701401137678	95	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21870584	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
7151	chr9	+	2917	22	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGAGCCCGGCGGCGAC	NA	False	NA	NA	False	NA	NA	NA	61824558	61854019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826253_61826893_61826976_61827156_61827239_61828299_61828529_61832251_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61840510_61840551_61842659_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
7152	chr14	-	2434	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-26	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1725.1813288127	9	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGGTACACACATGTC	NA	False	NA	NA	False	NA	NA	NA	36857255	36842266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36843525_36844106_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
7154	chr10	+	2544	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	17	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	272.669980686079	6	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACAGATCTGGCCTTGT	7007	False	NA	NA	False	NA	NA	NA	60113466	60138370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60138214_60138294
7155	chr15	-	2845	15	NIC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	-34	0	combination_of_known_splicesites	FALSE	canonical	2	27	junction_4	205.739432986762	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	81614136	81588453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
7156	chr18	+	4382	14	NNC	ENSMUSG00000024614.8	novel	4611	16	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	90.8685896870639	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGCATAATTGCTACCT	4785	False	NA	NA	False	NA	NA	NA	90528320	90561380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548277_90551099_90551165_90551344_90551399_90552505_90552563_90556622_90556692_90558062
7157	chr1	+	4005	19	NNC	ENSMUSG00000037461.11	novel	3069	19	NA	NA	-3	-87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	89.1184016136557	2	74	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCTAATTTCTTTGCTT	8316	False	NA	NA	False	NA	NA	NA	191307870	191354771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349983_191350023_191351707_191351894_191353276
7158	chr9	-	3832	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	7	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.374818809343	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAAATGTGCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	96993203	96957646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96957991_96958745_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127_96982293_96992963
7159	chrX	+	2366	18	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	2	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	919.877492971822	25	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524661	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539223_20547610_20547754_20548141_20548244_20548347_20548449_20548616
7160	chr4	+	4259	14	NNC	ENSMUSG00000028233.7	novel	4327	13	NA	NA	4	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	55.5801037152152	194	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGGCTTATCTCAAATT	-14	True	NA	NA	False	NA	NA	NA	3574878	3616606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858_3616153_3616203
7161	chr5	+	4826	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	63	4	5	-4	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	2044	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCACATGTTTTATATCT	NA	False	NA	NA	False	NA	NA	NA	65694638	65756327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
7162	chr8	+	3760	10	NIC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	36.3790062916159	48	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCCAGTCTTAGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	75720314	75758604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75720378_75726187_75726337_75726440_75726520_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
7163	chr9	+	3629	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	7	26	7	-1	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	424	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAAACTGGGTGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	108225058	108269718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
7164	chr2	-	3845	12	FSM	ENSMUSG00000027104.19	ENSMUST00000112016.9	3943	12	89	9	0	2	multi-exon	FALSE	canonical	3	57	junction_5	77.3989343681314	10	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722894	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
7165	chr1	-	3344	14	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-2	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	604.375515150647	2	78	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGAGCCTCATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	181669928	181642892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649157_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
7166	chr1	-	2680	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-122	176	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2064.26858545573	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTATCTTAGAAGGGTG	NA	False	NA	NA	False	NA	NA	NA	86287244	86278040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285160_86285857_86285946_86286927
7168	chr1	+	4422	21	NNC	ENSMUSG00000026288.15	novel	3942	23	NA	NA	111	-28	intron_retention	FALSE	canonical	0	0	junction_9	151.833658982454	2	75	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATATAAATAATAATATTA	9481	False	NA	NA	False	NA	NA	NA	87604071	87647388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87628469_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642998_87643036_87645411_87646007_87647042
7169	chrX	-	2941	12	FSM	ENSMUSG00000025151.17	ENSMUST00000153386.8	2884	12	-57	0	-44	0	multi-exon	FALSE	canonical	3	1240	junction_9	165.668493041908	1485	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGTGCTTCTCATC	NA	False	NA	NA	False	NA	NA	NA	93585653	93579081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
7170	chr17	+	3072	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	-8	15	-8	-15	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	89	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCTTTATAAGAGTTGC	NA	False	NA	NA	False	NA	NA	NA	95172337	95185734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
7171	chr7	+	6744	52	NNC	ENSMUSG00000058325.7	novel	411	4	NA	NA	25577	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	29.3992653178663	51	16	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACTCCTGGTGGCTGGCC	NA	False	NA	NA	False	NA	NA	NA	134298427	134775372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_134298517_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358688_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475_134384577_134390879_134391015_134406270_134406380_134449870_134449942_134453225_134453333_134475786_134475915_134477948_134478045_134592250_134592353_134600952_134601048_134678863_134678943_134683546_134683648_134693102_134693162_134700461_134700611_134710163_134710250_134710434_134710592_134715576_134715618_134717018_134717110_134720636_134720757_134734717_134734808_134735587_134735693_134739543_134739686_134739806_134739886_134742035_134742121_134745484_134745572_134747142_134747320_134748168_134748253_134753937_134754076_134760189_134760336_134765006_134765206_134768828_134768983_134770091_134770244_134774175
7172	chrX	+	3364	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	14	-14	at_least_one_novel_splicesite	FALSE	canonical	3	151	junction_11	167.554634539172	613	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTACCTGGCAGTTGGT	NA	False	NA	NA	False	NA	NA	NA	158315677	158376063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158374327_158374354_158375066
7173	chr5	-	2769	4	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	436.049181731704	4	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963379	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939075_135939337_135939754_135940167_135940506_135963176
7174	chr9	+	2928	22	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	169.743103213166	1	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	98445808	98470435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464927_98467108_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
7177	chr12	-	2634	24	NIC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-10	-2339	intron_retention	FALSE	canonical	3	1685	junction_13	177.354407927579	598	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATTTTCATGAAGGCTT	NA	False	NA	NA	False	NA	NA	NA	13299174	13269312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
7179	chr16	-	2848	15	NIC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	22	-10	intron_retention	FALSE	canonical	0	0	junction_9	315.8488481821	3	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCCGTGGCAGACGTTT	NA	False	NA	NA	False	NA	NA	NA	3895669	3857844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
7180	chr18	+	2989	6	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	680.577578237779	12	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	67908062	67928557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67920251_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
7182	chr16	+	2739	4	ISM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	20750	778	1453	38	3prime_fragment	FALSE	canonical	1	310	junction_3	207.327438287041	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7404	False	NA	NA	False	NA	NA	NA	38403923	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_38405881_38406582_38406771_38408544_38408666_38411273
7183	chr2	+	3011	26	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	29	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	302.002055622143	4	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGTCTGGTGTCTGAT	NA	False	NA	NA	False	NA	NA	NA	146854944	146919921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878585_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146916804_146916947_146919402
7184	chr5	-	3741	18	FSM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	-2	67	-2	0	multi-exon	FALSE	canonical	3	130	junction_6	37.7529760049699	455	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTGAGCCATGCAATTA	NA	False	NA	NA	False	NA	NA	NA	9211778	9168867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
7185	chr9	+	2969	22	NIC	ENSMUSG00000032604.17	novel	2398	24	NA	NA	0	-1	intron_retention	FALSE	canonical	3	473	junction_5	37.0130209361633	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGCGTCTCTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	108385257	108393133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
7187	chr19	-	3978	4	FSM	ENSMUSG00000071660.11	ENSMUST00000096751.11	3509	4	-469	0	-469	0	multi-exon	FALSE	canonical	3	197	junction_3	24.7116706571342	639	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGCATCTTAGAAATT	1416	False	NA	NA	False	NA	NA	NA	8797166	8786438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8789203_8793217_8793401_8795799_8796049_8796384
7188	chr11	-	2575	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.815131191409	8	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239136	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191731_75192036_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
7189	chr13	-	1932	5	NNC	ENSMUSG00000041431.17	novel	2140	8	NA	NA	0	-410	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1536.76397016588	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTTATGCAGCACCT	NA	False	NA	NA	False	NA	NA	NA	100922994	100916595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916785_100918850_100920156_100921964_100922127_100922240_100922412_100922889
7190	chr6	-	2270	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	86	5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1180.44491542262	37	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8571	False	NA	NA	False	NA	NA	NA	145021824	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144944938_144945142_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
7191	chr19	+	4111	19	NIC	ENSMUSG00000010097.16	novel	4042	20	NA	NA	12	0	intron_retention	FALSE	canonical	3	621	junction_4	65.1595383048312	46	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTACTGGCTTGTTTCCCTC	8627	False	NA	NA	False	NA	NA	NA	8734494	8748285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8744198_8744443_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
7192	chr3	+	2848	8	NNC	ENSMUSG00000027601.14	novel	2953	8	NA	NA	-21	-17	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	389.80685955368	1482	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGACAATACTATTATCT	NA	False	NA	NA	False	NA	NA	NA	19242407	19274964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269588_19269868_19271343_19271588_19272325_19272486_19273201
7193	chr6	+	2572	10	NIC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-8	-96	intron_retention	FALSE	canonical	3	5555	junction_1	324.990066324921	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATTTGCTTGGTGTGTTT	5107	False	NA	NA	False	NA	NA	NA	85428992	85445361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85444768_85445034
7194	chrX	+	3504	11	Antisense	novelGene_ENSMUSG00000031232.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGTGGGGCGTGAGAACG	NA	False	NA	NA	False	NA	NA	NA	105012334	105055420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_105014636_105015044_105015086_105017790_105017884_105023012_105023088_105027204_105027380_105027971_105028063_105032575_105032721_105032995_105033137_105036003_105036121_105040426_105040600_105055268
7195	chr6	-	2884	10	NIC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	2	3	intron_retention	FALSE	canonical	1	6	junction_1	332.798162981635	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416537	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72411379_72411641_72411723_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
7196	chr2	+	4333	33	NNC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	-9	-12	intron_retention	FALSE	canonical	0	0	junction_21	81.2698954006802	1	96	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTTATCAGGATGGTGT	NA	False	NA	NA	False	NA	NA	NA	180961522	180998395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991918_180991997_180992427_180992511_180992824_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
7197	chr12	-	5366	22	Antisense	novelGene_ENSMUSG00000042700.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	37	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACGTACTGAACTCGCTCA	NA	False	NA	NA	False	NA	NA	NA	82484496	82216258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_82216278_82216789_82216850_82281235_82281299_82358118_82358184_82377815_82378020_82387433_82387495_82387530_82389273_82404005_82404136_82409714_82409904_82419139_82419317_82431424_82431527_82434326_82434484_82442963_82443539_82444117_82444393_82449681_82449952_82463675_82463823_82467309_82467436_82469147_82469268_82471786_82472228_82479524_82479767_82480462_82480627_82484459
7198	chr16	+	3601	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	259.880076149055	1	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598608	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628318_13628521_13629385_13629474_13630953
7199	chr12	+	3328	13	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	10	-14	intron_retention	FALSE	canonical	3	17	junction_2	225.977321871023	12	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTTCTATGACTAAAAAA	399	False	NA	NA	False	NA	NA	NA	109609274	109628129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109609896_109611695_109611766_109612280_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
7200	chr4	+	763	3	FSM	ENSMUSG00000063524.14	ENSMUST00000136310.2	578	3	59	-244	59	0	multi-exon	FALSE	canonical	3	8073	junction_2	826.5	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150332080	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_150332397_150332517_150332577_150332942
7201	chr7	-	3160	21	NNC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	15	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	331.531668924705	13	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGGACTCTGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	28661750	28592681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593209_28594014_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
7202	chr2	-	3952	3	NNC	ENSMUSG00000027547.18	novel	328	3	NA	NA	24	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	266	28	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGGCGGGCTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	168609013	168590256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168592189_168596882_168598721_168608831
7203	chr10	-	3631	16	NIC	ENSMUSG00000020130.10	novel	3752	17	NA	NA	32	-586	intron_retention	FALSE	canonical	3	391	junction_15	43.9676648863179	685	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTTTCAGTTACA	NA	False	NA	NA	False	NA	NA	NA	115087340	115034362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
7205	chr10	-	2756	21	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	427.636247294356	1401	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	127147518	127132094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135349_127135876_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
7207	chr2	+	3581	19	NNC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	127.20423210989	325	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATGCAAGGGTGCGGA	NA	False	NA	NA	False	NA	NA	NA	153003465	153052380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526_153051093_153051158
7209	chr19	+	4146	23	NNC	ENSMUSG00000012443.5	novel	4819	22	NA	NA	-58	-678	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_22	79.4398909930756	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGTTGAAATATTAACC	NA	False	NA	NA	False	NA	NA	NA	37364792	37409629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706_37409336_37409388
7210	chrX	+	3031	25	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	-3	-101	combination_of_known_junctions	FALSE	canonical	3	128	junction_21	291.130241830582	129	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGCCGCAGCCACAGC	NA	False	NA	NA	False	NA	NA	NA	143100992	143152666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556
7211	chr8	+	3501	16	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-22	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	261.526000407013	1	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGAGGCTCACTTGATT	5027	False	NA	NA	False	NA	NA	NA	107329960	107396876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392834_107395857
7212	chr7	+	2278	7	ISM	ENSMUSG00000030965.20	ENSMUST00000106161.8	1224	8	5	1094	0	-666	5prime_fragment	FALSE	canonical	3	206	junction_3	18.3545331972483	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTGTGAGCGATT	NA	False	NA	NA	False	NA	NA	NA	132460977	132481944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257
7216	chr10	+	3900	24	NIC	ENSMUSG00000020064.10	novel	3898	25	NA	NA	4	-3	combination_of_known_splicesites	FALSE	canonical	3	11	junction_6	74.9567487134665	13	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGATACCAGTAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	63079592	63153650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
7217	chr6	-	3005	23	NIC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	-2	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	50.0318080642886	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCAAAGTTGCTATACTT	NA	False	NA	NA	False	NA	NA	NA	30873701	30748409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
7219	chr11	+	4029	16	NNC	ENSMUSG00000017421.19	novel	2898	17	NA	NA	-9	133	intron_retention	FALSE	canonical	1	5	junction_13	440.268473648624	27	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACAAATAATAGTGTATG	NA	False	NA	NA	False	NA	NA	NA	80274147	80296692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215_80286363_80286617_80286702_80289241_80289297_80293471_80293538_80294190_80294235_80294426
7220	chr12	+	5830	33	FSM	ENSMUSG00000002900.18	ENSMUST00000002979.16	5784	33	-46	0	13	0	multi-exon	FALSE	canonical	3	88	junction_13	20.6626313894794	151	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATGTTTCTTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	31315245	31379643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
7221	chr9	+	2724	21	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	-7	intron_retention	FALSE	canonical	3	468	junction_2	42.2865226756706	2	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACTAAATCCCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	108385256	108393121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
7222	chr10	+	2913	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_10	461.705264729881	2	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1624	False	NA	NA	False	NA	NA	NA	79690501	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698241_79698376_79698486_79698704_79698811_79698890_79698978
7223	chr11	-	4187	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1480.90691913942	1	202	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	NA	False	NA	NA	NA	100418695	100367181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383438_100384374_100384445_100384709_100384917_100386709_100386791_100389010_100389180_100389446_100389567_100394986_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405876_100406733_100406847_100407611_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
7224	chr7	-	2642	22	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	443.480641477257	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153793	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112934_143115591_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
7225	chr11	+	2861	11	NIC	ENSMUSG00000017421.19	novel	1562	12	NA	NA	0	-16	intron_retention	FALSE	canonical	3	261	junction_9	297.808260463003	566	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAGTTACCAATACAG	NA	False	NA	NA	False	NA	NA	NA	80274156	80287055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80286088_80286215
7227	chr13	+	3226	30	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	23	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	143.741485815167	880	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18901482	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18992566_18992624_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
7228	chr4	+	4108	12	FSM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	434	3	-31	-3	multi-exon	FALSE	canonical	3	306	junction_11	60.0897400518935	387	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTGGCTATGATACAT	439	False	NA	NA	False	NA	NA	NA	21848016	21876472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
7229	chr10	+	3487	4	NNC	ENSMUSG00000073427.5	novel	3330	4	NA	NA	13	7	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	63.5819680936873	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATGTTGTCATCCATT	NA	False	NA	NA	False	NA	NA	NA	82190105	82215477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_82190322_82204404_82204532_82204731_82204793_82212394
7230	chr11	-	3665	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	-34	0	-34	0	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	1162	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1302	False	NA	NA	False	NA	NA	NA	20062947	20012303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
7233	chr18	-	4667	21	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	5	90	intron_retention	FALSE	canonical	3	37	junction_6	78.5872763238427	1	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTCTTGCCATGGACTT	NA	False	NA	NA	False	NA	NA	NA	62681761	62637135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62648090_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681723
7234	chr11	-	2272	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_7	1165.40210037375	1	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9664	False	NA	NA	False	NA	NA	NA	106679310	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676075_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
7235	chrX	-	2540	14	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	425.827617426716	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	NA	False	NA	NA	NA	93585629	93579079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582474_93582634_93582888_93583460_93584154_93584856_93584931_93585497
7236	chr8	+	4364	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	34	32	6	-32	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	1	172	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATTTTATTAAAGAGTT	5083	False	NA	NA	False	NA	NA	NA	107330016	107396846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
7238	chr2	+	2898	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	24	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGCCCCTAGGTGTCT	651	False	NA	NA	False	NA	NA	NA	26279357	26287136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285906_26286137
7239	chr4	-	3777	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	15	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	506.419953744097	1	113	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080498	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054529_135056683_135056829_135059031_135059121_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071974_135073626_135073757_135074045_135074169_135074425_135074516_135080407
7241	chr4	+	5432	5	FSM	ENSMUSG00000028211.12	ENSMUST00000132010.8	5432	5	-4	4	-4	-4	multi-exon	FALSE	canonical	3	82	junction_4	77.6997425993163	340	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATGTGGAGGATTCTT	4	True	NA	NA	False	NA	NA	NA	11156436	11174375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11167896_11167935_11169709
7242	chr5	-	2726	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	32	2	-13	-2	multi-exon	FALSE	canonical	3	1165	junction_8	284.126264845403	1783	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGTGCATCCTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	122959370	122925523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
7243	chr2	+	3255	30	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	141	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	339.614396292099	1	71	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAATAAAGCTAAACTT	NA	False	NA	NA	False	NA	NA	NA	146855056	146919894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866639_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878585_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893637_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
7244	chr5	+	2885	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1058.76113400941	52	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493782	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504236_34506007_34506100_34507255_34507416_34508133_34508183_34508574
7245	chr3	-	3851	12	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	0	intron_retention	FALSE	canonical	1	1	junction_10	408.182243368882	11	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	NA	False	NA	NA	NA	157630700	157599884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157627733_157627878_157630502
7246	chr4	+	3455	21	NNC	ENSMUSG00000028405.10	novel	3832	21	NA	NA	326	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	72.4543131911414	13	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGGCTTTGGAGTTGA	0	True	NA	NA	False	NA	NA	NA	40143406	40198338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176007_40176527_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
7247	chr2	+	3600	10	NIC	ENSMUSG00000026977.18	novel	3594	10	NA	NA	12	79	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	112.133298101901	600	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATGGTTCTATTTTCTC	NA	False	NA	NA	False	NA	NA	NA	60040268	60079634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064277_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
7249	chr11	-	2792	14	NIC	ENSMUSG00000020929.15	novel	2889	27	NA	NA	-4470	-2	intron_retention	FALSE	canonical	3	1277	junction_10	93.4040025497178	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTCTGCCTTGGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	102743275	102729304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582
7250	chr10	-	2927	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	-168	-1565	-168	1565	mono-exon	FALSE	NA	NA	NA	NA	NA	770	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGACATAAAACTTT	2294	False	NA	NA	False	NA	NA	NA	41931470	41928543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41928500_41931500
7251	chr4	-	4023	11	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	268.317889824738	4	87	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6783	False	NA	NA	False	NA	NA	NA	126096444	126057874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126059165_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
7253	chr6	-	4334	27	NNC	ENSMUSG00000053470.14	novel	4753	26	NA	NA	-23	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	164.261359968491	1	111	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTCGCTGTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	71609912	71566025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572469_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588882_71589001_71590815_71590980_71593801_71593855_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609249_71609821
7255	chr8	-	2418	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	10	879	-7	1	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	59	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTACTTGGCTTCACTGGA	NA	False	NA	NA	False	NA	NA	NA	26330805	26306902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
7257	chr2	-	3209	9	Antisense	novelGene_ENSMUSG00000026926.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	33	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCGGTCACTTCCGCTTC	8749	False	NA	NA	False	NA	NA	NA	26285993	26279362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_26279443_26279945_26281188_26281874_26282686_26282915_26283010_26283096_26283215_26283306_26283400_26283529_26283592_26285035_26285182_26285430
7258	chr16	+	2869	20	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	716.847781877207	4	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470456	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478900_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
7259	chr11	-	3034	3	FSM	ENSMUSG00002076984.1_ENSMUSG00000093273.4_ENSMUSG00000020719.15	ENSMUST00000106778.2	708	3	-139	-2187	-139	2	multi-exon	FALSE	canonical	3	4106	junction_2	32.5	1	83	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	NA	False	NA	NA	False	NA	NA	NA	106676011	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106674989_106675239_106675351_106675705
7260	chr2	+	4981	18	NIC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	10	-2	intron_retention	FALSE	canonical	3	131	junction_1	21.5536668256985	11	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAATTGTTCAGGTCACAA	NA	False	NA	NA	False	NA	NA	NA	132658070	132685813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_132658386_132658993_132659166_132659624_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
7262	chr7	-	3078	12	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-841	1197	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_11	527.656960314744	1	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAACACAGGTAGAGACTT	NA	False	NA	NA	False	NA	NA	NA	143124777	143109769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143124700
7263	chr7	+	4450	22	NIC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	10	-3	intron_retention	FALSE	canonical	3	369	junction_9	43.006775820095	14	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTAGCTGTTCTAGTTT	1000	False	NA	NA	False	NA	NA	NA	97130229	97190598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
7264	chr8	+	3896	11	NIC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	-15	2	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	24.8185414559357	308	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCCAGTCTTAGCTGT	NA	False	NA	NA	False	NA	NA	NA	75720291	75758602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75720378_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
7266	chr19	+	3496	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	-13	-834	-13	0	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	1024	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCCATCCTCTGGTCT	821	False	NA	NA	False	NA	NA	NA	6413938	6428060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
7267	chr7	+	3074	4	ISM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	78	6908	0	2434	intron_retention	FALSE	canonical	3	741	junction_3	69.0362223763728	27	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAAGTATGGTGCTGAGG	NA	False	NA	NA	False	NA	NA	NA	63835206	63854267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634
7268	chr9	+	3179	13	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	21	-7	intron_retention	FALSE	non_canonical	0	0	junction_12	291.555121527455	10	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGCCTCTTAGGTTCAT	5533	False	NA	NA	False	NA	NA	NA	35122471	35128303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
7269	chrX	-	3240	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3726	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	413.376474143123	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23185144	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085802_23085873_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
7270	chr7	-	3535	22	NNC	ENSMUSG00000054808.16	novel	3530	22	NA	NA	-6	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	324.644651364941	31	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTCTGGTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	28661771	28592678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593209_28593550_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
7271	chr4	-	2491	4	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	3226	-1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	219.606213229246	28	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147723727	147696396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147723554
7272	chr18	+	4249	9	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	-87	68	intron_retention	FALSE	non_canonical	0	0	junction_6	423.150220814074	24	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTTTACTTTTCATC	1676	False	NA	NA	False	NA	NA	NA	35704892	35723859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35714349_35714649_35714776_35720675_35720907_35721384_35721507_35723432
7273	chrX	-	4606	10	NIC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	97	junction_9	42.882267767562	274	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATCTTCTGTATCATATT	NA	False	NA	NA	False	NA	NA	NA	156381670	156330820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
7274	chr13	+	3131	29	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	9	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	112.752409585547	25	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18901468	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037606_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
7275	chrX	-	2969	11	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATAGCCCGTGTGCAAA	NA	False	NA	NA	False	NA	NA	NA	100492186	100473478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100474159_100480813_100480984_100483092_100483288_100485120_100485420_100486531_100486632_100486900_100487097_100487881_100487966_100488291_100488396_100488899_100488939_100489719_100489834_100491198
7276	chrX	+	4402	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	-52	0	-52	0	multi-exon	FALSE	canonical	3	199	junction_10	29.4423164849507	305	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGTCTGCTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	52001090	52045820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
7277	chr8	-	4189	16	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	14	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	56.4173338217569	124	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTTTGTGGACTGAA	NA	False	NA	NA	False	NA	NA	NA	47070203	47029193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47029757_47030320_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47066758_47066893_47070046
7278	chr1	+	3603	14	NIC	ENSMUSG00000026439.15	novel	716	5	NA	NA	-30	9	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	98.5986425245921	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGCTTGTTTGTAAACA	NA	False	NA	NA	False	NA	NA	NA	132405349	132433406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_132405593_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
7279	chr5	-	3194	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_1	462.5	3	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963450	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937376_135937698_135940506_135963176
7280	chr5	+	3712	19	NIC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	87	-6	intron_retention	FALSE	canonical	3	453	junction_14	43.6456338941788	2	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCATTCCTATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	45827347	45857463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853887_45856182_45856253_45857189
7282	chr10	+	2797	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	36	336	0	3	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	2	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1621	False	NA	NA	False	NA	NA	NA	79690498	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
7283	chr18	+	4159	22	NIC	ENSMUSG00000024498.17	novel	4101	21	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_12	220.780433915689	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGATTGTAAATGATTAT	NA	False	NA	NA	False	NA	NA	NA	42644558	42708619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42684174_42684226_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
7284	chr11	-	4481	1	NIC	ENSMUSG00000018362.15	novel	1843	10	NA	NA	-576	-94	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGAAGCTGTCCTCTGA	NA	False	NA	NA	False	NA	NA	NA	106884029	106879548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106879500_106884000
7286	chr3	-	3030	17	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	26	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	323.657419195049	79	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAAAGCCTCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	104725591	104702155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702397_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
7287	chr11	+	4421	8	NIC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	13	748	intron_retention	FALSE	canonical	3	226	junction_5	22.0611395342811	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATCTTTTTGGTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	105017317	105031968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_105017433_105017601_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
7288	chr18	+	3466	10	Antisense	novelGene_ENSMUSG00000024360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGGGCCTCTGATCTC	1661	False	NA	NA	False	NA	NA	NA	35035843	35065009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35038122_35039032_35039183_35040667_35040735_35041096_35041253_35042197_35042326_35042797_35042988_35043167_35043307_35046605_35046744_35047046_35047212_35064954
7290	chr1	+	2845	6	ISM	ENSMUSG00000033813.16	ENSMUST00000165720.3	2854	10	30696	9	30696	-5	3prime_fragment	FALSE	canonical	3	1602	junction_5	166.657253067486	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACATACATGTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	4958956	4968123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
7291	chr12	+	2775	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	7	13	7	-13	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	835	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTGAATTAAGGTGTTG	NA	False	NA	NA	False	NA	NA	NA	70499875	70514801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
7292	chr13	-	2498	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	10	-145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	192.261855534971	2123	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGACTTACATTTTG	NA	False	NA	NA	False	NA	NA	NA	9046076	9022660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025058_9027230_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
7293	chr1	-	2847	12	NIC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	1	intron_retention	FALSE	canonical	3	5685	junction_11	915.72028281765	29	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTTAATACTTCCTA	NA	False	NA	NA	False	NA	NA	NA	86287096	86278215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
7294	chr19	+	3259	12	NIC	ENSMUSG00000010663.6	novel	742	6	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	233.92790441247	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10160897	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10161074_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
7296	chr9	+	2647	23	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	43	-1	intron_retention	FALSE	canonical	3	468	junction_2	40.5148682023593	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCCCTCTGGCGTCTCT	NA	False	NA	NA	False	NA	NA	NA	108385334	108393127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
7297	chr16	+	3160	27	ISM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	68	24486	10	-6	5prime_fragment	FALSE	canonical	3	145	junction_5	77.5356093034624	10	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGGCAAAATCAGAGTG	NA	False	NA	NA	False	NA	NA	NA	29398219	29449216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901
7298	chr8	+	4258	8	Antisense	novelGene_ENSMUSG00000037725.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGCGTGGATTGAACGGA	NA	False	NA	NA	False	NA	NA	NA	22658174	22675830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_22658991_22659728_22659963_22663276_22665187_22665769_22665976_22666789_22667595_22667681_22667756_22669529_22669612_22675699
7299	chr2	-	3129	29	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	3	-227	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	70.2258383171532	1	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCAAGAAGTTGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	103591537	103552232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574715_103578313_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
7300	chr16	+	2907	21	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_20	699.103418672803	2	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470434	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481470_20481812
7301	chr15	-	2779	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1528.4851702112	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	377	False	NA	NA	False	NA	NA	NA	36609217	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596008_36596046_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
7302	chr17	-	5982	6	ISM	ENSMUSG00000023980.8	ENSMUST00000233274.2	1692	7	865	-4365	848	-17	3prime_fragment	FALSE	canonical	3	187	junction_3	15.9323570133235	4	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTGTAAATGACTCAGA	NA	False	NA	NA	False	NA	NA	NA	47812349	47799223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208
7303	chr17	+	2934	15	NIC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-19	-3	combination_of_known_splicesites	FALSE	canonical	1	6	junction_1	473.58149095106	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4852	False	NA	NA	False	NA	NA	NA	87979948	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_87980235_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
7305	chr2	+	2863	9	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	804.746699278723	1	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	130116365	130121233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116614_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119545_130119768_130119891_130120075
7306	chr15	-	3584	10	NIC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	-1190	-3	intron_retention	FALSE	canonical	3	5069	junction_8	501.072430140507	6	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGATGGTTATGCTTTTA	5814	False	NA	NA	False	NA	NA	NA	36603780	36595907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598557_36599195_36599287_36599448_36600933_36601113_36601252_36601558_36601654_36603089
7307	chr11	-	3328	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9059	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	456.048165097601	6	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	365	False	NA	NA	False	NA	NA	NA	106615279	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545993_106562563_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
7308	chr17	-	4466	12	Genic_Genomic	ENSMUSG00000118071.2	novel	2911	1	NA	NA	-41992	-1980	multi-exon	FALSE	non_canonical	0	0	junction_1	0	251	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCCGATGCGCGCCGCAT	NA	False	NA	NA	False	NA	NA	NA	31826658	31783735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_31783868_31800780_31801023_31802667_31802776_31807431_31807560_31809574_31809746_31811072_31811247_31814195_31814297_31815767_31815866_31818486_31818617_31821758_31821834_31822158_31822332_31823724
7309	chr8	-	6521	5	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	3	9	intron_retention	FALSE	canonical	3	89	junction_2	170.635576595269	100	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTGCTCTGTCATAGGT	NA	False	NA	NA	False	NA	NA	NA	11685751	11664953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_11665911_11669061_11669298_11673696_11678531_11682865_11683019_11685410
7310	chr15	-	3482	14	NIC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	185	-364	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	201.697735067504	1131	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	51854721	51825999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854630
7313	chr3	+	5889	5	FSM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	55	7	55	-7	multi-exon	FALSE	canonical	1	87	junction_1	129.619635858152	2	175	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAACTGTTTCTAGTTC	NA	False	NA	NA	False	NA	NA	NA	129326089	129432137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
7315	chr11	+	2124	16	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	15	4173	-7	3032	5prime_fragment	FALSE	canonical	3	2354	junction_12	152.295093668692	1	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCACTGATGACGCTGAT	NA	False	NA	NA	False	NA	NA	NA	72332195	72338421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378
7317	chr11	-	2758	9	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-3	1516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.256170474084	1716	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTGTGAATGAAG	NA	False	NA	NA	False	NA	NA	NA	120534598	120528725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120528824_120529466_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
7318	chr18	+	3614	14	NNC	ENSMUSG00000024603.9	novel	3738	13	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	50.0843076204761	16	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTCGTGTGTCTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	60659272	60691822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299_60691134_60691241
7319	chr2	+	3614	14	NNC	ENSMUSG00000027242.15	novel	4170	13	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.000197237362	525	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121337186	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374114_121374761
7320	chr19	+	5162	14	NIC	ENSMUSG00000055491.15	novel	564	5	NA	NA	-1	-5	combination_of_known_junctions	TRUE	canonical	3	26	junction_1	132.96647261711	518	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGAACTTCCAGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	46045673	46061343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46045799_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
7321	chr15	-	2891	4	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	0	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	1037.5311508041	2	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACACAGTGAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	38300950	38294661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296409_38296858_38297772_38297865_38298028_38300881
7323	chr15	-	1374	13	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	20	1052	4	-468	5prime_fragment	FALSE	canonical	3	1461	junction_7	106.377472552541	66	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTCATCGCCACTGAAT	2765	False	NA	NA	False	NA	NA	NA	77854993	77844249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
7325	chr18	-	3302	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	148	-352	0	352	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	1009	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCTTCTGTTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	14815823	14758327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
7326	chr6	-	3021	12	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-19	-24	intron_retention	FALSE	canonical	0	0	junction_3	291.315000904633	32	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9153	False	NA	NA	False	NA	NA	NA	88495829	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484222_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
7327	chr13	+	2292	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	5	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	740.642405992068	1	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCACTCTTGGTATTGA	NA	False	NA	NA	False	NA	NA	NA	3588067	3615814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3597531_3597583_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
7328	chr1	-	6742	31	FSM	ENSMUSG00000056536.15	ENSMUST00000186485.7	6759	31	14	3	-5	-3	multi-exon	TRUE	canonical	3	42	junction_6	10.8119789534057	83	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGGTTTTCTTGTGATA	NA	False	NA	NA	False	NA	NA	NA	105591373	105446153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_105449853_105474388_105474442_105476789_105476833_105480096_105480171_105481788_105481865_105482168_105482225_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586611_105586732_105587017_105587092_105591224
7329	chr3	-	3060	23	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	0	-115	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	393.735742231695	3	53	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTAGTTGAAGTGTTTT	3550	False	NA	NA	False	NA	NA	NA	89959779	89907714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928607_89938617_89938678_89941371_89941485_89945657_89945773_89946154_89946293_89952190_89952239_89955076_89955207_89959696
7331	chr15	-	3591	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	0	365	0	-365	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	1134	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTGGAACATACTCAG	NA	False	NA	NA	False	NA	NA	NA	51855143	51826000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
7334	chr4	+	2807	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-31284	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	133.927426450132	156	106	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147545589	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147545711_147580452_147580533_147591995_147592098_147595209_147595337_147596801_147597173_147597930_147598436_147599020
7335	chr6	+	2779	15	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-30	-4	intron_retention	FALSE	canonical	0	0	junction_7	210.063061474212	64	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGTTGCTGTTGTGTTTT	5407	False	NA	NA	False	NA	NA	NA	125108841	125121712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125118122_125118236_125118466_125120963
7337	chr3	+	6569	7	FSM	ENSMUSG00000027660.17	ENSMUST00000118470.8	6578	7	7	2	0	-2	multi-exon	FALSE	canonical	0	0	junction_2	38.1113135725105	167	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGTTTGGTTCAAGTC	NA	False	NA	NA	False	NA	NA	NA	31149213	31176720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167652_31170964_31171189_31171521_31171747_31172603
7339	chr10	-	4353	29	NIC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	2	-22	combination_of_known_junctions	FALSE	canonical	3	19	junction_28	32.0305179732182	207	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGCCTTTTGCTTACTT	5696	False	NA	NA	False	NA	NA	NA	79911232	79892847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
7340	chr8	-	6143	13	NNC	ENSMUSG00000033658.17	novel	6612	12	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.332125123752	156	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTGTATGGGTATTT	NA	False	NA	NA	False	NA	NA	NA	111754397	111729826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731178_111731640_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
7342	chr15	-	4445	37	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	104.957498011761	1	130	14	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACGAGTGTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	76491722	76480010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481035_76481106_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
7343	chr2	+	5016	16	Antisense	novelGene_ENSMUSG00000027347.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	194	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTGGGCTGGGAGAAGG	NA	False	NA	NA	False	NA	NA	NA	117110470	117169049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_117113157_117115332_117115716_117116553_117116706_117117322_117117360_117118304_117118452_117119099_117119208_117119825_117119931_117120796_117120884_117122152_117122421_117124232_117124354_117125191_117125364_117128942_117129097_117130923_117131053_117132438_117132505_117136258_117136371_117168760
7345	chr13	+	3275	17	Antisense	novelGene_ENSMUSG00000116207.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGCCGAGCTAGCAGACC	5779	False	NA	NA	False	NA	NA	NA	119472174	119545486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_119472941_119474909_119475028_119476362_119476481_119491191_119491279_119494040_119494198_119502861_119503042_119505010_119505170_119506444_119506681_119508930_119509128_119511164_119511177_119518206_119518400_119523114_119523204_119525729_119525818_119531146_119531363_119533280_119533512_119541086_119541291_119545262
7346	chr11	-	1518	13	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	-1133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1073.79362218983	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGCTCAGGAACTGTGGC	NA	False	NA	NA	False	NA	NA	NA	100418695	100369184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100369237_100395650_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
7347	chr3	-	2920	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	33	4	33	-4	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTGTTTTTCTGTAA	2749	False	NA	NA	False	NA	NA	NA	65300011	65287079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
7348	chr16	-	2386	9	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	633	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	879.135859452337	615	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGTGACTGATGCAATA	NA	False	NA	NA	False	NA	NA	NA	22084679	22064564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067811_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077614_22078012_22084490
7349	chr2	+	3651	14	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	54	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	81.2521096676498	158	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATATGTGTGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	128943000	128968511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965191_128967141
7350	chr11	-	1066	1	NIC	ENSMUSG00000000384.16	novel	2324	13	NA	NA	780	238	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGCAGAGTTGTGATTAC	NA	False	NA	NA	False	NA	NA	NA	6567250	6566184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6566200_6567200
7352	chr2	+	3601	14	NNC	ENSMUSG00000027242.15	novel	2789	13	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	18.9255783212271	2	79	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTCTTTGAGTAATCT	NA	False	NA	NA	False	NA	NA	NA	121337266	121375340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365865_121366058_121367587_121367642_121372781_121374143_121374761
7353	chr4	+	2667	4	FSM	ENSMUSG00000065999.14	ENSMUST00000139784.8	628	4	24	-2063	24	-9	multi-exon	FALSE	canonical	3	55	junction_1	19.7540431867054	1	92	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147637757	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290
7354	chr10	-	4493	15	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	5	-15	intron_retention	FALSE	canonical	3	67	junction_14	71.9907873924696	20	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTCTGTTTTTATTCTG	8156	False	NA	NA	False	NA	NA	NA	62486947	62451808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
7355	chr8	-	2547	16	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	497.377880042484	2	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86026146	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987476_85989978_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008465_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
7358	chr18	-	2468	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1372.9662807816	2	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649586	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637502_64638007_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
7359	chr11	-	3405	16	NIC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	50	533	combination_of_known_splicesites	FALSE	canonical	2	34	junction_13	114.022142099194	5	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAAGCCAAGCGGTG	1180	False	NA	NA	False	NA	NA	NA	107080128	107056955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107077460_107077518_107077634_107077749_107079942
7360	chr4	+	3744	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	-26	0	-26	0	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	1340	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTCTGTCTACACACT	NA	False	NA	NA	False	NA	NA	NA	62278937	62310006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
7362	chrX	+	1938	7	ISM	ENSMUSG00000062070.13	ENSMUST00000135949.2	1764	11	9	2797	9	-2797	intron_retention	FALSE	canonical	3	4372	junction_6	236.289840849938	3	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAATTGTCCTGACTTCT	NA	False	NA	NA	False	NA	NA	NA	105230777	105244470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252
7366	chr4	-	3721	8	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	21	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	365.178904994608	4827	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTTTGAGTGAATGT	2513	False	NA	NA	False	NA	NA	NA	129229142	129200884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203665_129215709_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
7367	chr18	-	5441	4	Antisense	novelGene_ENSMUSG00000024276.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGAGGCGCGTCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	24097657	24087748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_24087946_24089393_24089908_24090108_24090253_24093071
7368	chr11	-	2583	6	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-22	493	intron_retention	FALSE	canonical	3	750	junction_5	105.479097455373	1415	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGGAAAAAGAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	120534552	120529748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120531175_120531967_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
7371	chr6	+	4097	9	Antisense	novelGene_ENSMUSG00000030168.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	206	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACATGTGGGAAAGTAATA	NA	False	NA	NA	False	NA	NA	NA	119330113	119394467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_119332890_119334176_119334370_119335881_119336075_119336315_119336503_119338792_119338964_119342223_119342344_119347112_119347372_119374487_119374598_119394379
7372	chr5	-	3486	7	NNC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	2	-6	intron_retention	FALSE	canonical	0	0	junction_2	391.242323318369	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATCTCAGTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	100186726	100181441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100184055_100184339_100184487_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
7374	chr2	+	3500	16	NNC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	-11511	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	134.163581745072	1	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATGCAAGGGTGCGGATT	6201	False	NA	NA	False	NA	NA	NA	153020807	153052382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037464_153042580_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
7375	chr2	-	3549	10	FSM	ENSMUSG00000039449.15	ENSMUST00000035721.14	3522	10	-27	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	461	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGTGCTGCTTGATTCA	NA	False	NA	NA	False	NA	NA	NA	4656924	4626868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
7377	chr6	+	3205	15	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-20	0	intron_retention	FALSE	canonical	0	0	junction_7	212.608207743728	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5417	False	NA	NA	False	NA	NA	NA	125108851	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
7378	chr2	+	2968	4	NIC	ENSMUSG00000027285.14	novel	3154	6	NA	NA	23	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	136.826735529119	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	NA	NA	NA	120439886	120452041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_120440027_120446335_120446469_120448353_120448463_120449455
7380	chr19	+	4023	9	NNC	ENSMUSG00000024976.15	novel	2976	7	NA	NA	-199	-3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	129.893947126107	5	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGAGCTTGTGTGTGTGG	3159	False	NA	NA	False	NA	NA	NA	53932537	54021559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53932733_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
7381	chr13	-	4045	11	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-11	-89	intron_retention	FALSE	canonical	1	1	junction_8	732.46174644141	5	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334814	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97320315_97322075_97322178_97325469_97325581_97327720_97327787_97330629_97330776_97334533
7383	chrX	+	3166	7	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	-10	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	811.161444404805	20	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGTGCAGTTTTGGG	NA	False	NA	NA	False	NA	NA	NA	139357351	139376877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369780_139371613_139372920_139374527_139374688_139375917
7384	chr9	+	3029	11	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	1280	junction_10	445.774113200845	10	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1145	False	NA	NA	False	NA	NA	NA	108437634	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
7386	chr10	-	2958	27	NIC	ENSMUSG00000052798.14	novel	3114	28	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	176.076591221921	5	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	NA	False	NA	NA	NA	117628615	117586525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
7389	chrX	-	3228	12	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	-16	1	intron_retention	FALSE	canonical	2	29	junction_11	546.74745254048	3	43	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAACCAAAAAACCTG	NA	False	NA	NA	False	NA	NA	NA	100129642	100122825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126471_100126753_100127881_100128877_100129064_100129193
7390	chr12	-	2794	10	NNC	ENSMUSG00000021266.17	novel	2764	10	NA	NA	-433	1	intron_retention	FALSE	canonical	0	0	junction_9	623.285520051744	366	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTCACTGTCTGACCAA	NA	False	NA	NA	False	NA	NA	NA	108854776	108825958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108854704
7391	chr11	-	3788	30	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	17	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	80.2724996333369	1	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTACTTTTAATATTAAA	NA	False	NA	NA	False	NA	NA	NA	60618032	60604968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607308_60607476_60607586_60608034_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
7392	chr18	+	2780	2	FSM	ENSMUSG00000057561.11	ENSMUST00000235973.2	2651	2	904	-1033	615	0	multi-exon	FALSE	canonical	3	1710	junction_1	0	18	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	46731695	46743278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46731768_46740570
7395	chr8	-	3724	27	NNC	ENSMUSG00000039509.9	novel	5808	26	NA	NA	-5	-2180	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_22	115.214188239112	6	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTAGGTCTGGATCAAC	NA	False	NA	NA	False	NA	NA	NA	124676009	124626041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667525_124667617_124667773_124667882_124670993_124671098_124673231_124673351_124675736
7396	chr2	+	2733	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	-9	-3	-9	0	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867785	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
7397	chr7	-	1314	14	ISM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	319	287	-27	-287	5prime_fragment	FALSE	canonical	3	1951	junction_13	209.501917066259	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTAAGCGTGTATACTCC	9501	False	NA	NA	False	NA	NA	NA	45083728	45071608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
7398	chr4	+	2570	5	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	23003	363	67	-363	3prime_fragment	FALSE	canonical	3	1466	junction_1	78.7317439156532	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGTCTCGTGAGCTGCAT	921	False	NA	NA	False	NA	NA	NA	129106555	129113037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
7399	chr4	-	1887	14	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	27	-522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	286.940997584302	73	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCCCTTGCAGCTGCAG	NA	False	NA	NA	False	NA	NA	NA	122779626	122753361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122753598_122753733_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
7400	chr10	-	2286	12	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	591.079178318203	3	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTCACTGTTGTGTGTT	8805	False	NA	NA	False	NA	NA	NA	128401743	128393641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399194_128399519_128399575_128401608
7401	chr17	+	3024	9	ISM	ENSMUSG00000041057.11	ENSMUST00000234560.2	2410	19	287	15694	-33	-1324	intron_retention	FALSE	canonical	3	1341	junction_7	123.390639839495	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCTTCAGACACACCATG	NA	False	NA	NA	False	NA	NA	NA	71923176	71949090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228
7402	chrX	+	3829	13	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	324.776803700976	1	110	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACTATGACTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	95139643	95212153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203705_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
7403	chr1	-	2241	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2652.18693951429	13	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287086	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280316_86280889_86281003_86281453_86281578_86282741_86282867_86283773_86283891_86284133_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
7405	chr16	-	2954	20	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	-2	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	640.008968081211	1	80	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTATCTAGCATTTAT	NA	False	NA	NA	False	NA	NA	NA	91443815	91418286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418664_91418756_91418851_91419780_91419923_91421239_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438481_91438578_91439844_91440035_91443771
7406	chr5	+	3182	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	649.164050364555	1	100	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTAGCTCTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228775_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241957_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
7407	chr7	-	3593	21	NNC	ENSMUSG00000054808.16	novel	3530	22	NA	NA	47	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	498.932861214813	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGGACTCTGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	28661718	28592681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593636_28593961_28594085_28594545_28594612_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
7408	chr5	+	5978	11	NNC	ENSMUSG00000029313.19	novel	8323	20	NA	NA	49304	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	95.5030889552794	31	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGATTGGAGTTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	103981528	104003177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_103982326_103988921_103989020_103990092_103990334_103990853_103990955_103991073_103991135_103994099_103994234_103994901_103994974_103995579_103995718_103997215_103997443_103998567_104001869_104002369
7409	chr4	+	2589	5	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	34	1909	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	48.3599782878363	2	88	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145136869	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145159036_145159152_145173287_145173342_145176036
7410	chr3	+	3134	6	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	0	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	660.715672585417	3	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGACTAGCTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	95836594	95854695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845319_95852499
7412	chr6	+	4385	26	NIC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_22	83.1527365755331	182	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	83891348	83963853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83958665_83958768_83960957_83961057_83961758_83961878_83963539
7413	chr10	+	2746	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	-26	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	618.176192970544	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41395470	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667_41406026_41406134
7414	chr1	+	3318	21	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	766.366705631188	1	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095260	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103224_185105213_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185160284
7416	chr11	-	3965	30	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	73.1050585378931	10	34	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAAAAATCAGTACTTT	NA	False	NA	NA	False	NA	NA	NA	60618049	60604978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611321_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613531_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
7417	chr1	+	4634	25	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_14	61.9559515345827	273	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGACCCACTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	128031037	128165469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109902_128112136_128112392_128114494_128114647_128118374_128118477_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
7418	chrX	-	3450	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	183.815463352445	31	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800282	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767590_149768813_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
7419	chr4	-	2660	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	233.592058940367	2175	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147727012	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702962_147725321_147725463_147726820
7420	chr4	+	3653	11	ISM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	121	13	-5	-9	intron_retention	FALSE	canonical	3	675	junction_7	31.7464958696232	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAATTGAGTTAAGT	9693	False	NA	NA	False	NA	NA	NA	155648277	155675445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066
7421	chrX	+	3194	22	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	15	-729	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	190.525207978586	3	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799438	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810766_150816832_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
7423	chr18	-	4155	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-35	91	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	64.6469568111548	29	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTCTTGCCATGGACTTG	NA	False	NA	NA	False	NA	NA	NA	62681801	62637134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62648090_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
7424	chr13	+	2243	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	772.207517445926	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588114	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598901_3598971_3600988_3601089_3604411_3604551_3606236_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
7425	chr8	+	2113	11	Antisense	novelGene_ENSMUSG00000031835.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTGAGGAGTAGGAGAAG	6407	False	NA	NA	False	NA	NA	NA	120234902	120252225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_120235714_120236991_120237124_120240612_120240739_120242315_120242449_120244877_120245018_120247009_120247089_120247736_120247861_120248492_120248650_120249216_120249337_120251168_120251341_120252106
7426	chr11	+	1481	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-14	multi-exon	FALSE	non_canonical	0	0	junction_1	0	209	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654237_120654367
7427	chr8	-	5541	9	Antisense	novelGene_ENSMUSG00000031904.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	92	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCGCCGTCGCCCCGGCGG	9086	False	NA	NA	False	NA	NA	NA	106926503	106895532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_106895588_106905731_106906293_106916248_106916373_106918968_106919906_106920123_106920227_106921050_106921148_106921991_106922142_106922482_106922667_106923173
7428	chr1	+	2401	7	Antisense	novelGene_ENSMUSG00000042414.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCCTAAAGTGACTGTA	6505	False	NA	NA	False	NA	NA	NA	13183648	13195934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13184712_13186003_13186111_13188989_13189192_13192586_13192856_13194586_13194749_13194844_13194901_13195392
7429	chr5	+	2318	13	NNC	ENSMUSG00000039682.13	novel	795	4	NA	NA	537	-19	at_least_one_novel_splicesite	FALSE	canonical	2	37	junction_1	734.083593483891	15	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGTTTGTTCACTGTGA	NA	False	NA	NA	False	NA	NA	NA	45651404	45670014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45651663_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
7430	chr1	-	2893	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	830.019418071047	13	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	NA	False	NA	NA	False	NA	NA	NA	128287391	128259329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273747_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
7432	chr17	-	3087	15	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_12	503.806632001783	16	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5756	False	NA	NA	False	NA	NA	NA	33904377	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
7433	chr5	-	4043	18	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	-15	-6	intron_retention	FALSE	canonical	3	48	junction_16	426.1520351863	4	79	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTAAGCTGTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	149559689	149540315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149555756_149555876_149557294_149557353_149559434
7434	chrX	-	2939	12	FSM	ENSMUSG00000025151.17	ENSMUST00000153386.8	2884	12	-53	-2	-40	0	multi-exon	FALSE	canonical	3	1240	junction_9	165.668493041908	1159	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	NA	False	NA	NA	NA	93585649	93579079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
7436	chr18	-	3510	20	NNC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	14	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	468.792874308868	11	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60981976	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949068_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956067_60960411_60960520_60961436_60961578_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
7437	chrX	+	2219	14	ISM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	95	9670	0	3206	5prime_fragment	FALSE	canonical	3	1167	junction_1	504.451697185072	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAACTCAGCACCAGAAG	NA	False	NA	NA	False	NA	NA	NA	20524659	20539748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054
7438	chr1	+	3039	21	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-2942	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	247.750862763382	3	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	388	False	NA	NA	False	NA	NA	NA	171919875	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940980_171946791_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
7441	chr6	-	2305	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	101	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.44491542262	25	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8586	False	NA	NA	False	NA	NA	NA	145021809	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945525_144945671_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
7442	SIRV8002	+	3440	1	FSM	SIRV8002A	SIRV8002	8000	1	0	4560	0	-4560	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGCTAAGCACACAGTAG	NA	False	NA	NA	False	NA	NA	NA	0	3440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV8002_+_0_3400
7443	chr11	-	4051	29	NIC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	58	-1	intron_retention	TRUE	canonical	3	227	junction_18	32.2201451750615	6	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAACTAGTTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60617991	60604949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
7444	chrX	+	3803	7	NNC	ENSMUSG00000054994.3	novel	3698	5	NA	NA	29	160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	99.1121698996759	17	33	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGGTTCTTCGTGAA	NA	False	NA	NA	False	NA	NA	NA	134395365	134405503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134395469_134395666_134395786_134399463_134399520_134400016_134400317_134401619_134402205_134402781_134403771_134403852
7445	chr19	+	3285	11	FSM	ENSMUSG00000010663.6	ENSMUST00000235160.2	3301	11	6	10	6	-7	multi-exon	FALSE	canonical	1	1	junction_1	244.492126662598	17	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAAGAATGTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	10160308	10174231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10160629_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
7446	chr1	-	3373	16	NNC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	5	0	intron_retention	FALSE	canonical	2	4	junction_11	246.178309361325	9	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	NA	NA	NA	63215844	63182754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204055_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
7449	chr16	-	2041	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45973832_45973877
7450	chr5	-	3585	13	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	145	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256654	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208744_108228785_108228889_108229000_108229081_108234861_108234960_108235161_108235261_108235804_108235982_108241192_108241272_108241989_108242113_108246982_108247053_108248678_108248857_108251906_108252017_108252269_108252396_108254452
7451	chr13	+	2022	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588129	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615105_3615268
7452	chrX	-	2601	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-1	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	551.111334014588	28	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921353	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158905942_158906129_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913097_158913232_158915064_158915239_158916168_158916229_158921251
7453	chr14	-	3559	29	NIC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-21	0	intron_retention	FALSE	canonical	0	0	junction_27	77.8002741194478	23	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGCTGTGACATCATAC	9777	False	NA	NA	False	NA	NA	NA	55873109	55863196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
7456	chr2	-	4683	25	NNC	ENSMUSG00000026980.16	novel	5172	35	NA	NA	30244	-384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	170.91209058558	1	35	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTGTTTCATATTTATA	NA	False	NA	NA	False	NA	NA	NA	60183331	60122830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_60124283_60129390_60129559_60131298_60131422_60133921_60134072_60136673_60136843_60138482_60138710_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163305_60164794_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265
7457	chr2	-	4286	20	NNC	ENSMUSG00000039671.19	novel	5072	22	NA	NA	357	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	190.067811196914	1	89	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATATCTTTTTTGATG	NA	False	NA	NA	False	NA	NA	NA	165703568	165626091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594_165649844_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687663_165687842_165688057_165688160_165693919_165694069_165703460
7458	chr10	-	2905	16	NNC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-15023	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_15	137.740077279232	10	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTGCAGTGTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116400091	116321073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116399935
7460	chr13	-	3818	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18665	3079	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	27.2	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74739488	74724397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74727579_74728971_74729033_74729232_74729360_74730309_74730434_74731765_74731993_74739390
7461	chr2	-	3945	16	NNC	ENSMUSG00000027104.19	novel	4195	14	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.378108802165	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722971	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73648093_73648426_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
7462	chr12	+	2252	9	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	-2	-57	intron_retention	FALSE	canonical	3	5416	junction_8	454.781540962251	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758237	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
7463	chr8	-	3229	15	Antisense	novelGene_ENSMUSG00000031826.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	40	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGCCGCGGGAGAGCC	NA	False	NA	NA	False	NA	NA	NA	120684296	120637542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_120637676_120658584_120658655_120663267_120663327_120667850_120668550_120668675_120668878_120669278_120669453_120674448_120674550_120675156_120675211_120675415_120675524_120677098_120677198_120678659_120678840_120679920_120680083_120681525_120681671_120682934_120683000_120683318
7464	chr16	+	4303	11	NNC	ENSMUSG00000008976.17	novel	4987	10	NA	NA	223	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	194.659292097757	8	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	84632234	84660667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262_84659436_84659896
7465	chr4	-	3074	15	NNC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	207.735224430976	374	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	2	True	NA	NA	False	NA	NA	NA	48473428	48430857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462896_48467674_48467905_48468280_48468994_48469883_48470073_48473265
7467	chr2	+	3238	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-99	-1858	-21	1858	multi-exon	FALSE	canonical	3	436	junction_1	343.521307765456	2484	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCTGTGCTGTTACAGCT	NA	False	NA	NA	False	NA	NA	NA	174852012	174862899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_174852115_174858430_174858558_174858749_174858811_174859951
7468	chr16	-	3053	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	4	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.566912506689	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGTATCATTGTACCC	8120	False	NA	NA	False	NA	NA	NA	4867717	4831769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832294_4832531_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
7469	chr18	+	2826	21	NNC	ENSMUSG00000024231.16	novel	397	2	NA	NA	208	15	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	202.819494871672	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAGCATAATGCCTTT	253	False	NA	NA	False	NA	NA	NA	3383518	3435400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383660_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
7470	chr10	+	4816	4	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	-1	-264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.7106781186548	215	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATCTTATTTATTA	NA	False	NA	NA	False	NA	NA	NA	75868486	75878804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75868601_75869453_75869509_75874067_75874276_75874365
7471	chr9	-	4218	6	FSM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	199	2456	-17	-2456	multi-exon	FALSE	canonical	3	321	junction_5	34.2169548615887	420	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTGATGTCTGTTTCTT	4111	False	NA	NA	False	NA	NA	NA	45896150	45876612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
7472	chr10	+	3030	9	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	46	-1	intron_retention	FALSE	canonical	3	717	junction_1	92.4715327817161	1	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTGCATAAATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	21870655	21875789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21872009_21872121_21872254_21872457_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
7473	chrX	-	3233	7	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	-7703	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	53.3937158183329	58	58	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTGATGTGAAGATTGGA	NA	False	NA	NA	False	NA	NA	NA	49666779	49652003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653212_49655744_49656311_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662229_49666747
7474	chr10	-	3114	8	ISM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	12439	4	335	-4	3prime_fragment	FALSE	canonical	3	611	junction_2	48.4502690542434	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTTAGTTCTTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	62425621	62416033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556
7476	chr15	+	2693	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	742.448632780975	7	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756706	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779624_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793699_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798545_81798825
7477	chr5	-	1959	5	Antisense	novelGene_ENSMUSG00000029581.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCGCCCGTCGTGGCG	NA	False	NA	NA	False	NA	NA	NA	142958938	142946811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_142947035_142955658_142955817_142955921_142956040_142956268_142956439_142957648
7478	chr1	-	3413	13	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	3767	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	611.750420015294	10	114	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	181666124	181642899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647436_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942
7479	chr16	+	3753	9	NNC	ENSMUSG00000022800.15	novel	4312	9	NA	NA	-13	-453	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	205.61641319457	17	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGGCAGTAGTTTTGTGG	NA	False	NA	NA	False	NA	NA	NA	32698137	32728792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32726020
7480	chr13	+	3958	27	FSM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	59	4	59	0	multi-exon	FALSE	canonical	3	310	junction_8	45.9393251760748	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGCCTCTCCTAATCC	NA	False	NA	NA	False	NA	NA	NA	94495526	94702821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
7481	chr9	+	3193	18	Intergenic	novelGene_1041	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	404	13	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAACCCGCCCCCAAGCTG	NA	False	NA	NA	False	NA	NA	NA	53009944	53159422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010566_53028454_53028589_53060801_53060855_53068465_53068633_53071197_53071320_53115358_53115829_53118763_53118857_53120989_53121077_53124535_53124634_53134955_53135047_53136773_53136934_53140422_53140555_53145129_53145318_53146562_53146683_53147698_53147857_53149345_53149477_53151774_53151838_53159117
7482	chr12	+	2038	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1908.10962997413	12	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763297_24763360
7483	chr15	+	3960	23	Antisense	novelGene_ENSMUSG00000037487.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	377	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGAAAAGTAGTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	37968120	37998663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_37968748_37970503_37970591_37971990_37972136_37973145_37973259_37973544_37973701_37975828_37975914_37976298_37976479_37978264_37978326_37980032_37980164_37981062_37981211_37981711_37981820_37984188_37984433_37986119_37986221_37986322_37986443_37988446_37988667_37989524_37989641_37989723_37989895_37991538_37991614_37992194_37992427_37996798_37997011_37997167_37997432_37997958_37998190_37998530
7484	chr5	-	4108	12	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	7	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	654.664256895241	1	146	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTGATGTCTGCAGCAT	NA	False	NA	NA	False	NA	NA	NA	92231569	92200037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202684_92202731_92202911_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
7486	chr3	+	3059	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	279.992201057567	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCCCTACTGCCATAGG	NA	False	NA	NA	False	NA	NA	NA	102965617	102975229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102972656_102974048
7487	chrX	+	2505	9	NNC	ENSMUSG00000031303.9	novel	4348	29	NA	NA	133786	15012	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGCGGGCGTCCCCAAG	3541	False	NA	NA	False	NA	NA	NA	158905214	158921359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158906943_158907513_158907550_158910639_158910724_158911459_158911552_158912401_158912497_158913103_158913234_158915066_158915244_158916173_158916228_158921250
7488	chr15	-	2545	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-22	345	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	760.329958019364	30	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	NA	False	NA	NA	False	NA	NA	NA	11399709	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393385_11394386_11394501_11397266_11397348_11399571
7489	chr1	+	4361	28	Intergenic	novelGene_418	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	127	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTACGCTTGACCTCCCC	NA	False	NA	NA	False	NA	NA	NA	93335483	93406526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_93335984_93336092_93336220_93336410_93336525_93336669_93336859_93340084_93340226_93341210_93341350_93341550_93341653_93342532_93342689_93344222_93344365_93344896_93345120_93345192_93345412_93347790_93348013_93348808_93348938_93349064_93349113_93350988_93351098_93351489_93351603_93353003_93353129_93355279_93355359_93355869_93355973_93357097_93357207_93357818_93358029_93358678_93358904_93359046_93359243_93364817_93365034_93365949_93366108_93368402_93368517_93369910_93369976_93406438
7490	chr2	-	4567	13	NNC	ENSMUSG00000041219.15	novel	4958	12	NA	NA	-60	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.963219861107	253	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTGTCTGCGTGTTGTA	5952	False	NA	NA	False	NA	NA	NA	113679066	113661836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_113662635_113663144_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
7492	chr11	-	3308	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-85	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	153.985408960848	2	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTACTACATTGCCGAT	1091	False	NA	NA	False	NA	NA	NA	79145381	79130218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79133432_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
7493	chr10	-	3014	27	NIC	ENSMUSG00000052798.14	novel	3114	28	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_26	170.582763753964	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	NA	False	NA	NA	NA	117628607	117586525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625961_117628508
7494	chr8	+	2323	15	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	93	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	439.889898098353	7	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	NA	False	NA	NA	NA	75836344	75854325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839261_75842485_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
7496	chrX	-	2980	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	8	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227934	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086111_23086351_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
7497	chr2	+	3160	7	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-34	-1	intron_retention	FALSE	canonical	3	1175	junction_3	77.6523591971866	292	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8629	False	NA	NA	False	NA	NA	NA	72306562	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312857_72313698_72314361_72314942_72315093_72315519_72315657_72316063
7498	chr10	-	2253	13	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.805619318392	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	8745	False	NA	NA	False	NA	NA	NA	128401803	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394625_128394804_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
7499	chr10	-	4082	18	Antisense	novelGene_ENSMUSG00000019978.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	117	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGGAAGCCTGGAAAGC	NA	False	NA	NA	False	NA	NA	NA	25399413	25308504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_25308592_25317470_25317953_25319636_25319851_25336687_25336793_25343991_25344037_25345093_25345168_25347314_25347538_25348974_25349060_25354904_25355058_25355563_25355662_25360103_25360277_25364846_25364990_25377719_25378284_25380029_25380156_25382070_25382170_25383672_25383754_25388868_25388978_25398192
7501	chr6	+	3077	12	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	1688	-5	intron_retention	FALSE	canonical	0	0	junction_3	239.612738523664	3	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTAGTTGCTGTTGTGTTT	7249	False	NA	NA	False	NA	NA	NA	125110683	125121711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
7502	chr9	+	5619	25	NIC	ENSMUSG00000042185.15	novel	5398	26	NA	NA	0	-6	intron_retention	FALSE	canonical	2	9	junction_5	15.0406855635713	2	90	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAATTTCTGGGCCTTTA	NA	False	NA	NA	False	NA	NA	NA	31297499	31332623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308089_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
7503	chr4	+	2806	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	-208	2	-208	-2	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	1002	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTCATGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	130640227	130663450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
7505	chr18	-	2709	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	106	234	106	-234	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAAGCCTCTTGATCTCC	305	False	NA	NA	False	NA	NA	NA	35087304	35070700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
7506	chr11	-	2544	8	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	-34	0	intron_retention	FALSE	canonical	3	9657	junction_7	1587.30496793291	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563177	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69560073_69560958_69561574_69561753_69561803_69563104
7507	chr7	+	4297	20	NNC	ENSMUSG00000055319.9	novel	4505	19	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	34.6985434804919	281	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTCTCTCCCTGTTTC	1931	False	NA	NA	False	NA	NA	NA	128346666	128386560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151_128385885_128386092
7508	chrX	-	3268	2	ISM	ENSMUSG00000025266.12	ENSMUST00000112691.9	4869	16	29262	0	5912	0	3prime_fragment	FALSE	canonical	3	578	junction_1	0	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149771056	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_149769183_149770834
7509	chrX	+	3754	12	NIC	ENSMUSG00000044150.13	novel	578	4	NA	NA	-46	-7	intron_retention	FALSE	canonical	3	25	junction_1	179.30540915451	420	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCAGTTGGTGAGAGCA	NA	False	NA	NA	False	NA	NA	NA	158309637	158376070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
7511	chrX	-	2186	9	NNC	ENSMUSG00000057421.13	novel	4126	10	NA	NA	-10	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	310.918774561782	7	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAACCTTAAGGATGTCAA	NA	False	NA	NA	False	NA	NA	NA	95000502	94984325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94984555_94990016_94990165_94990472_94990699_94994178_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
7512	chr1	-	2993	18	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_17	1086.18464659799	7	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287378	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128286096_128286203_128287195
7513	chr2	-	2977	12	NIC	ENSMUSG00000027206.14	novel	2073	13	NA	NA	19	-149	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	290.444430041529	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTATTTTCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	125700897	125672372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_125674258_125675643_125675703_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
7514	chr10	-	4069	15	NNC	ENSMUSG00000020097.15	novel	4070	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	167.12889135793	1	83	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	60983455	60934420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943360_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959256_60982036_60982111_60983363
7515	chr6	-	3114	20	NIC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	262.43635819997	489	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTTTCAGTTCTTTGG	7899	False	NA	NA	False	NA	NA	NA	124806404	124791983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801611_124801814_124801949_124802074_124802142_124803261_124803388_124806247
7518	chr4	+	2110	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	563	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	40.1769523483303	70	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCAAACTGAGCCACCCA	NA	False	NA	NA	False	NA	NA	NA	145159006	145178021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145173065_145173196_145173287_145173342_145176036_145176243_145176326
7519	chr10	+	2979	10	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	717	junction_1	84.6036510901142	29	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAAATTGTGTCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21873337_21873796_21873953_21874058_21874149_21874558
7520	chr2	-	3246	29	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-89	-227	combination_of_known_junctions	FALSE	canonical	3	12	junction_28	68.8429149497282	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCAAGAAGTTGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	103591360	103552232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591139
7522	chr11	+	1737	7	NIC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	-33	-42	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	171.994831963702	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATAGCTTTATATTTAT	9367	False	NA	NA	False	NA	NA	NA	62770406	62785969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62770543_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
7523	chr6	-	3078	24	NNC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	48.8261450307448	68	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCAAAGTTGCTATACTT	NA	False	NA	NA	False	NA	NA	NA	30873683	30748409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30748987_30749404_30749504_30749759_30749860_30750532_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
7524	chr2	-	4116	34	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.171419825742193	1	83	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGCCACGCCTAAATGCTA	NA	False	NA	NA	False	NA	NA	NA	180997824	180961543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964306_180964601_180964687_180965154_180965236_180965474_180965536_180970393_180970471_180972585_180972669_180976702_180976770_180977684_180977838_180980027_180980148_180980844_180980888_180980955_180981033_180982286_180982387_180983315_180983366_180988618_180988698_180988803_180988887_180990965_180991101_180991255_180991368_180991459_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993174_180993380_180993491_180993593_180993743_180993831_180993971_180994542_180994641_180995768_180995967_180996143_180996233_180996798_180996923_180997123_180997345_180997441_180997604_180997714
7525	chr8	+	2739	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	-26	0	7	0	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	1228	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72704888	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
7526	chr5	-	3314	3	ISM	ENSMUSG00000023452.20	ENSMUST00000138360.8	790	4	11113	-2555	11113	0	3prime_fragment	FALSE	canonical	3	689	junction_1	55	6	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTACCGTAGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	32931812	32893652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_32896718_32922116_32922293_32931739
7528	chr2	+	3433	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	26	-1107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	297.618614179579	3	95	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAATAAGTAAAATAAAGT	1743	False	NA	NA	False	NA	NA	NA	5849870	5875599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899_5874066_5874250
7529	chr6	-	3944	24	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	141.223414949706	1	88	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	-3	True	NA	NA	False	NA	NA	NA	29609628	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541406_29541454_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
7530	chr10	+	4288	18	NIC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-13	1	intron_retention	FALSE	canonical	3	30	junction_1	82.0204633087627	9	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTGTCACTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	25308483	25399412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_25308782_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
7531	chrX	-	3653	11	NNC	ENSMUSG00000031232.18	novel	1608	11	NA	NA	1	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	70.7856623900632	158	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATCTAAATTACATGG	NA	False	NA	NA	False	NA	NA	NA	105055504	105011701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012837_105013694_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
7532	chr7	+	3243	23	FSM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	-3	0	-3	0	multi-exon	FALSE	canonical	3	369	junction_9	43.027187253819	650	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGCTGTTCTAGTTTCTG	930	False	NA	NA	False	NA	NA	NA	97130159	97190601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
7533	chr4	-	2679	8	Antisense	novelGene_ENSMUSG00000095460.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	248.448245339437	2	85	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACTTCCTCTTGGTTCC	133	False	NA	NA	False	NA	NA	NA	146806010	146426546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146426718_146697969_146698058_146797293_146797379_146800388_146800517_146802049_146802597_146802680_146803363_146803525_146803941_146805447
7534	chr10	-	2355	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	598.528401944205	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	-8	True	NA	NA	False	NA	NA	NA	128401877	128393636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394688_128394926_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
7536	chrX	+	4261	6	NNC	ENSMUSG00000060090.17	novel	4498	6	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	163.77911954825	8	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTTGATGTCTATACT	NA	False	NA	NA	False	NA	NA	NA	20230824	20267091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890_20264862_20264911
7537	chr12	+	3726	22	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	3	454	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	190.648303192565	2	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGGGGGAGGAGCTCAC	4038	False	NA	NA	False	NA	NA	NA	83679082	83729248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83682175_83682256_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
7538	chrX	+	3906	29	Antisense	novelGene_ENSMUSG00000031161.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	6	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCTTTTCCATTGGGCT	1959	False	NA	NA	False	NA	NA	NA	7796361	7814259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_7796776_7797021_7797157_7797254_7797394_7797517_7797620_7797703_7798199_7798301_7798481_7800414_7800566_7802312_7802505_7802624_7802689_7803179_7803317_7803544_7803715_7803868_7803995_7804081_7804251_7804464_7804533_7804624_7804731_7805680_7805771_7805843_7805903_7805996_7806065_7806156_7806284_7808082_7808154_7808273_7808376_7809624_7809724_7809879_7809977_7810812_7810853_7810951_7811038_7812901_7812994_7813144_7813271_7813363_7813484_7814177
7539	chr1	-	3472	15	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	0	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	582.763595434088	1	100	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	181669944	181642879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646475_181646532_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
7540	chr2	+	2011	16	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	-5860	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	281.960391229375	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146878605	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916950_146919402
7541	chr2	+	1398	6	ISM	ENSMUSG00000027363.16	ENSMUST00000138859.2	3463	17	32	26482	0	-26482	5prime_fragment	FALSE	canonical	3	334	junction_5	27.0214729428283	3	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGATTCTAGTTTGTAA	3593	False	NA	NA	False	NA	NA	NA	126549279	126574686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980
7542	chr2	+	1177	1	Antisense	novelGene_ENSMUSG00000027364.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTCAATTCCAAGGAGC	6282	False	NA	NA	False	NA	NA	NA	126574686	126575863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_126574700_126575900
7543	chr6	-	2417	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	59	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.44491542262	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGGAGATAAACTCTGGA	8544	False	NA	NA	False	NA	NA	NA	145021851	144944891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945058_144945129_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
7544	chr9	-	3077	19	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	83.1682067696782	324	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	NA	False	NA	NA	NA	53159400	53009934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115491_53115588_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
7546	chr5	-	2379	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	570	13	-34	4	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	5847	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTTAATAACTCTGTAG	2286	False	NA	-123	True	NA	NA	NA	138170114	138162857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
7547	chr11	+	1999	14	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	186	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	1424.6122196343	47	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940625	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940946_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
7548	chr7	+	1829	1	Genic_Genomic	ENSMUSG00000003549.10	novel	NA	NA	NA	NA	1629	1304	mono-exon	FALSE	NA	NA	NA	NA	NA	21	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTAAGCTCCCACTG	3622	False	NA	NA	False	NA	NA	NA	19089924	19091753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_19089900_19091800
7550	chr8	-	3953	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21249	-5	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	1	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGTGAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	81585876	81491073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
7551	chr5	-	3308	6	NNC	ENSMUSG00000109771.2	novel	512	6	NA	NA	-5471	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	25.9460979725276	679	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGTTCCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	110234225	110224000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110224776_110225005_110226088_110226171_110227247_110228349_110228411_110228603_110228731_110234037
7554	chr13	-	2787	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	10	405	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.553051610888	19	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTATGCCTAGTAACTTAA	NA	False	NA	NA	False	NA	NA	NA	9046076	9022110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023186_9024283_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
7555	chr11	-	4241	27	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	1043.69020149007	1	156	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTGATGCTCTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	100418695	100367180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410669_100412807_100412931_100414265_100414448_100418616
7556	chr11	+	4610	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	-10	14	-10	-14	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	905	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTATGAATTCCAACCCCAA	7	False	NA	NA	False	NA	NA	NA	98798616	98814748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
7557	chr2	+	2043	1	Antisense	novelGene_ENSMUSG00000039145.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGACAGAGGAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	5342026	5344069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_5342000_5344100
7558	chr8	-	3497	18	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	9	-183	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	321.336374760071	1	97	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438290	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411889_80412589_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
7559	chr6	-	2577	10	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_4	2984.2854512129	4	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446828	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439545_51440390_51440474_51441068_51441192_51441407_51441528_51443144_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
7561	chr17	-	5792	8	NIC	ENSMUSG00000023980.8	novel	2784	9	NA	NA	5	-29	intron_retention	FALSE	canonical	3	80	junction_1	44.4889346480948	263	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTCATAATAAAAACTTTGT	NA	False	NA	NA	False	NA	NA	NA	47813207	47799235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_47800822_47801067_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
7563	chr9	-	3377	19	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6358	37229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGCCACGCGGT	5015	False	NA	NA	False	NA	NA	NA	21316658	21279308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279465_21299823_21300046_21300600_21300778_21303584_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21314431_21314798_21315355_21315486_21315989
7564	chr15	-	3692	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-51	5162	-51	-19	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	678	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCAGTCTTCAGACATACC	NA	False	NA	NA	False	NA	NA	NA	103148294	103105132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
7566	chr3	+	2565	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	-140	4	-140	-4	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	2832	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTGTGTGCCTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	122067896	122078916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
7567	chr13	+	4483	6	NNC	ENSMUSG00000021395.12	novel	4434	6	NA	NA	473	1	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	296.576735432839	345	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTGGCTGTGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	51255388	51306583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_51255548_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
7569	chr5	+	3022	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	197	484	197	-8	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGATGCCACATGACTTC	NA	False	NA	NA	False	NA	NA	NA	45827457	45857404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
7570	chr13	-	1384	3	ISM	ENSMUSG00000074832.12	ENSMUST00000172579.4	2587	4	-42	2433	-2	-2433	5prime_fragment	FALSE	canonical	3	147	junction_1	23	3	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCAACCTGTAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	66589181	66580383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_66581540_66581739_66581867_66589080
7571	chrX	+	3700	8	NIC	ENSMUSG00000015291.11	novel	3696	9	NA	NA	3	-2	intron_retention	FALSE	canonical	3	736	junction_5	46.9072032238729	2	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAGCCTGGCTCTTTAG	6209	False	NA	NA	False	NA	NA	NA	73348864	73355462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73354141_73354243_73354299_73354392
7572	chr18	-	2838	11	NNC	ENSMUSG00000037013.18	novel	3098	11	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	280.080417023397	3	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	14815858	14758685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14758882_14758929_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
7573	chr7	-	4796	33	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	1	41	junction_22	36.4423774608628	272	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCTGTCTATAAAGCC	NA	False	NA	NA	False	NA	NA	NA	29979850	29939562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29939910_29940002_29940140_29940655_29941310_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
7574	chr13	-	5458	11	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	26	-89	intron_retention	FALSE	canonical	2	4	junction_9	716.6514913122	10	125	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334839	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97315925_97317589_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330577_97330776_97334533
7575	chr13	+	3142	28	NIC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	5	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_26	113.990301130029	51	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18901464	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19048202_19048283_19050289
7576	chr5	+	4000	12	NNC	ENSMUSG00000014932.16	novel	1403	5	NA	NA	1952	0	intron_retention	FALSE	canonical	2	22	junction_1	221.180043336301	505	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	32770630	32844401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_32770699_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
7577	chr12	+	7449	23	FSM	ENSMUSG00000055884.9	ENSMUST00000058889.5	7775	23	-5	331	-2	-331	multi-exon	TRUE	canonical	3	55	junction_4	33.1504521739726	124	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCCAATATTTAACATGAAC	9278	False	NA	NA	False	NA	NA	NA	65122374	65178501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426_65140544_65141644_65141732_65142494_65142680_65144075_65144283_65146021_65146227_65148334_65148487_65149335_65149492_65151801_65153666_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048
7578	chr9	+	3098	20	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_3	167.160579323531	2	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCCTCTGGCGTCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	108385254	108393130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386267_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388492_108388616_108388730_108388818_108389681_108389782_108389898_108390396_108390484_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
7579	chr18	+	3390	11	NNC	ENSMUSG00000024423.7	novel	591	6	NA	NA	-81	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	323.236275810745	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13107453	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13107533_13107769_13107899_13109035_13109089_13109525_13109587_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
7580	chr4	-	2888	14	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	-5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	451.462750827369	2	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCTTGTTCTGGAATT	NA	False	NA	NA	False	NA	NA	NA	116484699	116458248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462913_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476104_116484568
7581	chr13	+	3862	27	NNC	ENSMUSG00000021686.7	novel	4021	27	NA	NA	74	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	86.037868365618	6	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCTCTCCTAATCCTTA	NA	False	NA	NA	False	NA	NA	NA	94495541	94702824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554662_94576856_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
7582	chr4	-	2743	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	-38	0	-38	0	multi-exon	FALSE	canonical	3	663	junction_8	52.1791784782653	1580	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120427511	120397064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
7583	chr4	+	3016	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	127.762366220348	3	144	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576855	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578938_147591935_147592098_147595209_147595337_147596801_147597359_147597943_147598397_147599065
7584	chr17	+	3208	19	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	370.081005480265	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGTCTCGTGGTGTATA	NA	False	NA	NA	False	NA	NA	NA	71923219	71966026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470_71965680_71965911
7587	chr9	+	3606	10	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-7	-5	intron_retention	FALSE	canonical	3	5755	junction_3	184.110339970222	8	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGAACTGTGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	108765774	108778682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108776122_108776403_108776827_108776923_108777010_108777612_108777702_108778006
7589	chr13	-	2728	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	493.918758295247	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498361	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487294_74487787_74487835_74491455_74491618_74492969_74493057_74498264
7591	chr15	-	2910	9	Antisense	novelGene_ENSMUSG00000115902.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1440	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCCCACCTTCTTCCTGC	NA	False	NA	NA	False	NA	NA	NA	79793089	79776620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79776768_79779608_79779763_79781897_79782172_79782310_79782425_79783218_79783318_79789639_79789800_79790539_79790804_79791051_79791163_79791502
7592	chrX	-	2789	10	NIC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1250	junction_9	86.2863449992717	1858	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAAACCTGTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	100128978	100122817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
7593	chr6	-	2626	6	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	318	-4	at_least_one_novel_splicesite	FALSE	canonical	2	39	junction_5	869.696176834186	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGAGGTCTCTGGTAAGA	NA	False	NA	NA	False	NA	NA	NA	148847335	148822536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847226
7595	chr16	+	5842	31	NIC	ENSMUSG00000023088.18	novel	6792	31	NA	NA	2	790	combination_of_known_junctions	FALSE	canonical	3	25	junction_20	25.3100770445291	161	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATTTGCAGTAAAGA	7176	False	NA	NA	False	NA	NA	NA	14179441	14292696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_14179508_14207670_14207848_14209181_14209308_14211816_14211955_14214214_14214341_14221853_14221916_14222877_14223010_14228563_14228798_14229312_14229491_14231084_14231247_14237563_14237657_14240920_14241125_14254370_14254518_14255509_14255598_14257850_14257924_14261211_14261339_14263156_14263334_14265341_14265510_14266263_14266448_14275751_14275834_14276887_14276994_14277620_14277832_14278761_14279073_14282906_14283107_14283967_14284095_14284860_14284963_14285686_14285834_14288333_14288493_14289801_14289969_14290674_14290870_14291323
7596	chr5	+	4722	11	Intergenic	novelGene_778	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	9.23092628071528	4	109	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATCTTACAATAACTTTAC	NA	False	NA	NA	False	NA	NA	NA	104810206	104849370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104810344_104822387_104822474_104836648_104836776_104837017_104837079_104838328_104838648_104838895_104839230_104839313_104839803_104839961_104840339_104840422_104840944_104846461_104846948_104847585
7597	chr16	-	2936	18	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	-13	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	289.738409640077	62	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCAGACGTTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	3895652	3857838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3863048_3863132_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
7598	chr7	+	2827	14	NNC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	307.567474677167	2	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAAATACTACACTGTT	NA	False	NA	NA	False	NA	NA	NA	79944226	79965994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950116_79950798_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
7599	chr9	-	3609	18	NIC	ENSMUSG00000032480.18	novel	3806	19	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	148.151446874719	6	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGTGCTGCTGTCCTCC	NA	False	NA	NA	False	NA	NA	NA	109930103	109913392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
7600	chr5	-	2388	8	ISM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	8687	6	-1601	-6	3prime_fragment	FALSE	canonical	3	487	junction_1	40.1492114950402	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAATTCTGTCTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	92574391	92563404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481
7601	chrX	-	3945	19	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-5	-12	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	21.556128285633	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAAACCTACAGATTGC	NA	False	NA	NA	False	NA	NA	NA	47683334	47630514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549_47680639_47683240
7602	chr11	-	4048	23	FSM	ENSMUSG00000001441.14	ENSMUST00000001480.14	4215	23	169	-2	1	0	multi-exon	FALSE	canonical	3	268	junction_18	36.1553409289133	541	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGCCTGGTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	97171295	97096667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97098095_97103105_97103154_97103857_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97158420_97158506_97171026
7603	chr16	+	4073	4	NNC	ENSMUSG00000054604.8	novel	4425	3	NA	NA	45	-126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	548.331003034562	21	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCGTACTCCTGTGCTTC	NA	False	NA	NA	False	NA	NA	NA	64672403	64679744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_64672600_64673161_64673389_64675913_64677801_64677981
7604	chr1	+	2449	11	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-29	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	575.732064418858	419	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAAATCAATAAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	4928007	4968097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578_4967860_4967955
7605	chr16	-	2010	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	2	-9	multi-exon	FALSE	canonical	1	11	junction_1	0	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	45975438	45973356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45974209_45974280
7606	chr19	-	4670	24	NIC	ENSMUSG00000024812.12	novel	4728	24	NA	NA	69	9	combination_of_known_junctions	TRUE	canonical	0	0	junction_23	82.6461699898347	367	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTATGAATGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	24202321	24071859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202214
7607	chrX	-	3672	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	848	-117	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	8	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATTTATGCTTATAATT	NA	False	NA	NA	False	NA	NA	NA	59223601	59101435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
7608	chr18	+	3589	17	ISM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	33748	15	8	-15	3prime_fragment	FALSE	canonical	3	1584	junction_13	162.379185858287	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAACCAAGTCTAAGAA	NA	False	NA	NA	False	NA	NA	NA	35285659	35387817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
7609	chr13	-	4790	5	NNC	ENSMUSG00000021510.12	novel	9455	4	NA	NA	9	28	intron_retention	TRUE	non_canonical	0	0	junction_1	13.2382022948737	52	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAGCCTATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	67785901	67765117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67768766_67769185_67769969_67771586_67771683_67772153_67772281_67785765
7610	chr18	+	2786	21	NNC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	9	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	211.943176346869	311	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCATAATGCCTTTTT	-3	True	NA	NA	False	NA	NA	NA	3383240	3435402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383334_3399839_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
7611	chr11	+	1986	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4060.57933797629	13	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642862_75646417_75646507_75647642_75647850_75650117_75650255_75655445
7613	chr8	-	3268	5	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	813.061805768787	45	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTTGCTGTTTTGCCTA	NA	False	NA	NA	False	NA	NA	NA	125589742	125563684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565620_125565704_125566706_125567186_125567237_125587847_125588011_125589623
7614	chr14	+	3273	4	NNC	ENSMUSG00000025290.18	novel	2769	4	NA	NA	0	-1	intron_retention	FALSE	canonical	1	3	junction_3	5305.24660647887	16	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTCTGCTCTGCTGCTTA	NA	False	NA	NA	False	NA	NA	NA	24540796	24545925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_24540827_24541817_24541884_24541974_24542677_24543450
7618	chr19	+	3987	10	NNC	ENSMUSG00000024976.15	novel	2976	7	NA	NA	-237	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	164.243120005484	2	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTGTGGTGTTTT	3121	False	NA	NA	False	NA	NA	NA	53932499	54021565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53932733_53975884_53976163_53976242_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
7619	chr10	+	4327	20	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-16435	0	intron_retention	FALSE	canonical	2	9	junction_12	135.67592151399	32	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	NA	NA	NA	25258121	25399411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25258259_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25371342_25371490_25377475_25377530_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
7620	chr16	-	3258	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.566912506689	37	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8107	False	NA	NA	False	NA	NA	NA	4867730	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832727_4832773_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
7621	chr18	-	3323	13	ISM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	-50	2	-7	-2	intron_retention	FALSE	canonical	3	4499	junction_2	343.350727714712	28	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAATTATGGTCTGACA	NA	False	NA	NA	False	NA	NA	NA	64649558	64633290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396
7622	chr14	-	3872	3	NNC	ENSMUSG00000062014.14	novel	280	3	NA	NA	20	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	284	26	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTCTAGTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	47059679	47045608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47049281_47051700_47051775_47059553
7623	chr6	-	3317	19	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	7	4	intron_retention	FALSE	canonical	3	759	junction_15	53.8268829984919	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTACGGGGGCTGACTGGT	7863	False	NA	NA	False	NA	NA	NA	124806440	124791996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
7625	chrX	+	3673	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	105	-901	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	179.101998988472	1	112	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCAATGAACAATAGCAGG	NA	False	NA	NA	False	NA	NA	NA	150799528	150844789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806128_150809225_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
7626	chr9	+	4502	23	NNC	ENSMUSG00000038535.18	novel	4387	22	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.2417761386937	201	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGATTCCTGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	72182184	72271053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72182312_72199063_72199209_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
7627	chr1	-	2682	16	FSM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	-2	4566	-2	-4566	multi-exon	FALSE	canonical	3	52	junction_10	11.1705963234835	62	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAGGGGAAGTGACTCCA	NA	False	NA	NA	False	NA	NA	NA	170695342	170536808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_170537657_170574674_170574760_170614914_170615030_170616176_170616245_170621525_170621626_170622225_170622340_170627182_170627315_170642991_170643084_170646815_170647002_170662388_170662610_170668249_170668454_170669254_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
7628	chr1	-	1905	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	763	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2150.7861910635	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	-89	True	NA	NA	NA	86285928	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278318_86279072_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828
7630	chr12	-	3822	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	2	33	-1	-33	multi-exon	FALSE	canonical	3	174	junction_2	59.8431282604778	57	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAGTGGTAATTAAAT	NA	False	NA	NA	False	NA	NA	NA	87490607	87472971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
7631	chr8	-	3497	9	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1008.70411915487	11	62	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTAAAACTGAATGACTAA	NA	False	NA	NA	False	NA	NA	NA	94763642	94742136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743925_94745322_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404_94763434_94763518
7634	chr10	-	2647	14	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	324	-3	intron_retention	FALSE	canonical	3	1936	junction_7	216.986842782756	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCCCTTAATGTCTTAC	NA	False	NA	NA	False	NA	NA	NA	116898956	116886913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880
7635	chr17	-	2172	11	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	2578	5952	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCAAGCCAACTGGCCCA	NA	False	NA	NA	False	NA	NA	NA	13143991	13136747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142104_13142297_13142415_13142580_13143145
7636	chr8	-	2489	5	Antisense	novelGene_ENSMUSG00000004565.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAACCTCCATGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	3594242	3589718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3591593_3592297_3592421_3592848_3592950_3593074_3593176_3593952
7639	chr7	-	3824	25	NIC	ENSMUSG00000038644.15	novel	3302	26	NA	NA	-44	0	intron_retention	FALSE	canonical	3	875	junction_24	155.064631462354	40	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198201	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
7641	chr4	-	2905	9	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	518	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	527.600405136311	5	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323262	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304589_141304645_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
7642	chr10	+	4902	5	NNC	ENSMUSG00000061759.16	novel	5044	4	NA	NA	-3	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	96.0234346396753	21	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCTCACTGGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	4382616	4405138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4402383_4402418
7643	chr17	-	3097	22	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	204.683406880368	87	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTGCCTGTGGGGTGC	NA	False	NA	NA	False	NA	NA	NA	36280644	36267711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275226_36280537
7644	chr13	-	2517	6	NNC	ENSMUSG00000021302.11	novel	2209	6	NA	NA	3	22203	intron_retention	FALSE	non_canonical	0	0	junction_1	117.514254454513	6	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGGTCAGACACTTCTG	NA	False	NA	NA	False	NA	NA	NA	14237968	14203040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_14203048_14226705_14228213_14228379_14229041_14229734_14229806_14232380_14232474_14237790
7645	chr6	-	2596	7	NNC	ENSMUSG00000039985.15	novel	2737	6	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1012.9647493044	14	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148846267	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824071_148824154_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846086
7646	chr8	+	4078	13	NNC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	39.4598072586384	24	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATAGTCCAGTCTTAG	NA	False	NA	NA	False	NA	NA	NA	75720313	75758598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75720378_75725462_75725567_75725908_75726013_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
7647	chr17	+	4046	23	NIC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	4	0	intron_retention	FALSE	canonical	3	368	junction_14	34.5568163134136	4	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGGCTCTGTGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	29879598	29922333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
7648	chr14	+	4245	41	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-37	105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	248.718363566103	1	84	14	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATCAAAGTGGTATAGAC	NA	False	NA	NA	False	NA	NA	NA	47886813	47973855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47901212_47901773_47904755_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948296_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47971611_47971722_47973556
7649	chr13	-	3545	5	ISM	ENSMUSG00000113204.2	ENSMUST00000221389.2	1049	11	26492	-3079	18645	3079	3prime_fragment	FALSE	canonical	1	1	junction_4	32.4143101114307	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74739508	74724397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_74727579_74728971_74729033_74729232_74729360_74730309_74730368_74739390
7650	chr16	-	3019	8	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-9918	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	369.553287974903	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCAACCTGCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	22230497	22200058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22200881_22201020_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
7651	chrX	-	2521	13	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-9	-14	intron_retention	FALSE	non_canonical	0	0	junction_1	616.506978197868	18	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGCTACTTTTACAGTTC	NA	False	NA	NA	False	NA	NA	NA	158921418	158905218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158905869_158905936_158905973_158906302_158907020_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
7652	chr9	+	3709	16	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	19	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	115.233367081279	4	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGATTCAAACCTAAGT	NA	False	NA	NA	False	NA	NA	NA	109760886	109912223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896741_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109911644
7653	chr5	-	2862	12	Antisense	novelGene_ENSMUSG00000039682.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGCACGTGGCGCGTGG	NA	False	NA	NA	False	NA	NA	NA	45670016	45650766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_45650902_45652505_45652624_45654261_45654314_45654667_45654775_45655773_45655934_45657742_45657908_45660719_45660879_45662062_45662189_45663514_45663602_45664445_45664550_45666777_45666858_45668447
7656	chr7	-	4534	12	FSM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	73	9	8	-9	multi-exon	FALSE	canonical	2	49	junction_10	11.9551503476414	196	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAGGACTATCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	46608202	46572972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
7657	chr11	-	2257	8	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	0	-4	intron_retention	FALSE	canonical	3	9657	junction_7	1461.2186415343	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTTTGGGCTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	69563141	69557766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561574_69561753_69561803_69563104
7658	chr16	-	3763	18	FSM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	-73	0	-73	0	multi-exon	TRUE	canonical	3	134	junction_12	18.4520326427881	403	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	NA	False	NA	NA	NA	57051940	56989224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
7659	chr11	-	5778	19	FSM	ENSMUSG00000020687.14	ENSMUST00000093923.9	5425	19	-137	-216	0	216	multi-exon	FALSE	canonical	3	109	junction_8	36.161503300992	356	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCCAATGGTAATTTT	2066	False	NA	NA	False	NA	NA	NA	104441446	104393354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411663_104412206_104412415_104413548_104413649_104416876_104416993_104417688_104417804_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
7660	chr18	+	3896	2	Antisense	novelGene_ENSMUSG00000073647.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	124	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCTCTGGCGGACACTGC	NA	False	NA	NA	False	NA	NA	NA	4195188	4199260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_4197231_4197406
7661	chr9	-	3906	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	18	0	7	0	multi-exon	TRUE	canonical	3	517	junction_5	114.47891605978	825	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	108526561	108480140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
7662	chr9	-	3219	12	FSM	ENSMUSG00000032113.17	ENSMUST00000174105.8	2142	12	-14	-1063	-14	105	multi-exon	FALSE	canonical	3	20	junction_10	131.27033490643	106	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTATTTTTTTATTTTG	707	False	NA	NA	False	NA	NA	NA	36637895	36619672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
7665	chr2	-	4180	19	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	8	-6	intron_retention	FALSE	canonical	0	0	junction_14	178.715478406942	2	91	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAGAGGCTGTGAAACG	NA	False	NA	NA	False	NA	NA	NA	5017556	4995540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011388_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
7666	chr14	-	4929	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	-84	-2370	-84	2370	multi-exon	TRUE	canonical	3	610	junction_1	26.6868413267663	1540	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTAAAAAGAGGCAAAA	NA	False	NA	NA	False	NA	NA	NA	40688848	40626031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
7667	chr9	-	3950	24	NIC	ENSMUSG00000032480.18	novel	3968	23	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	203.686849607955	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109946495	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913848_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109937008_109937038_109938093_109938190_109942038_109942094_109944103_109944230_109944558_109944651_109946425
7668	chr10	-	5155	12	NIC	ENSMUSG00000020228.12	novel	4554	13	NA	NA	-2	-10	intron_retention	FALSE	canonical	3	54	junction_6	7.36644166541196	3	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTTCATCGCCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	119948772	119919522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_119920879_119925312_119925781_119927513_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063_119941943_119944790_119944961_119946737_119947134_119948589
7669	chr2	+	2295	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	132	junction_7	957.813444800877	63	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116349	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
7670	chr18	-	5249	9	NIC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	-14	-5	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	22.8250821466211	289	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATTCGACTTTATGACT	NA	False	NA	NA	False	NA	NA	NA	35836188	35804160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35835464_35835559_35836078
7671	chr10	-	1354	5	Antisense	novelGene_ENSMUSG00000004207.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCGGGCGGGCAGCAC	NA	False	NA	NA	False	NA	NA	NA	60138376	60135734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_60135837_60135925_60136081_60136312_60136396_60136550_60136661_60137472
7672	chr7	-	3716	15	NIC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	31	-6	intron_retention	FALSE	canonical	0	0	junction_2	409.953655917349	36	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTCTGTTGCCCTAGT	NA	False	NA	NA	False	NA	NA	NA	33867969	33840118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33842300_33843914_33844021_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
7673	chr11	+	4734	19	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	1	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	66.2103130603953	2	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCTTCCAGTCCACTGA	2848	False	NA	NA	False	NA	NA	NA	78192450	78213278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78192533_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204544_78204645_78205625_78205786_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212484_78212593_78212953
7674	chrX	-	1841	11	ISM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	-24	5211	-24	145	5prime_fragment	FALSE	canonical	3	815	junction_3	57.6537943243981	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACCAAAAGGTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	95000543	94984151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
7676	chr7	-	4760	27	NNC	ENSMUSG00000032777.10	novel	6961	37	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	48.4572189772166	193	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTGTATTGGCCTAATG	NA	False	NA	NA	False	NA	NA	NA	125306896	125240125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125240906_125241618_125241812_125242497_125242538_125243045_125243166_125261532_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
7677	chr10	-	5825	9	Antisense	novelGene_ENSMUSG00000040195.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCGCCTCCTCCTCGCGTG	2465	False	NA	NA	False	NA	NA	NA	127536909	127512956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127513095_127524099_127524216_127525091_127525156_127526717_127526803_127528835_127528929_127529350_127529466_127530295_127530522_127531235_127531409_127532094
7678	chr11	-	2779	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	5	-88	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	242.201477195238	8	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758954	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11752762_11752850_11753064_11756095_11756216_11758894
7680	chr4	+	2432	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-37	2581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	124.535545290557	8	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576836	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597429_147597511_147598004_147598082_147598412_147599988
7682	chrX	+	3008	14	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-6	0	intron_retention	FALSE	canonical	2	66	junction_8	877.805817510022	4	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-26	True	NA	NA	NA	74139698	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
7683	chr18	+	2858	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-10	-370	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	162.05014018471	1	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTATGTGCCAAGTGTG	9040	False	NA	NA	False	NA	NA	NA	32970353	32999083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985873_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
7684	chr5	+	4901	6	NNC	ENSMUSG00000029178.15	novel	298	4	NA	NA	-5441	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	263.203039496127	309	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATAATCATGTGATTACT	NA	False	NA	NA	False	NA	NA	NA	64955289	64990244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
7685	chr10	+	3708	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	9	-6	intron_retention	FALSE	canonical	3	23	junction_3	45.6436068138267	392	22	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAACAGGGTTTATGCTC	9124	False	NA	NA	False	NA	NA	NA	41352340	41363020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354632_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
7686	chr8	-	2465	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	2134.61483645177	32	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43759966	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460_43759201_43759877
7687	chr10	-	3322	20	NNC	ENSMUSG00000037012.19	novel	3639	20	NA	NA	391	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.560799438259	10	23	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCGGAGTGGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	62175930	62104886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105181_62105557_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117593_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127753_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
7688	chr16	+	3024	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	-30	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	29	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598541	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631086_13631680
7689	chr3	+	2932	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	60	282	-19	-161	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	91	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGCAAGGGTGGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	95836617	95854420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
7690	chr15	-	2412	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-17	300	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1024.1944259867	2	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTGAATTATGGCGTT	NA	False	NA	NA	False	NA	NA	NA	11399704	11383790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389762_11390407_11390497_11391146_11391294_11391899_11391979_11392055_11392106_11392367_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
7691	chr11	+	3322	28	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-2	640	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	159.252962838496	949	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGATTTTTAAGGTATGT	NA	False	NA	NA	False	NA	NA	NA	29080745	29112468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103258_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
7693	chr11	+	3568	19	NIC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	-7	-7	intron_retention	FALSE	canonical	3	393	junction_6	40.9945795874961	571	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGCAGTTCTCACGTCA	NA	False	NA	NA	False	NA	NA	NA	119158844	119176273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
7694	chr2	+	3661	11	NNC	ENSMUSG00000026977.18	novel	2271	11	NA	NA	-9	-6	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	141.713125715299	2	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAGTTTGAACTTTTTC	NA	False	NA	NA	False	NA	NA	NA	60040247	60079549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071420_60073362_60073430_60073900_60074015_60075555_60075605_60078233
7695	chr14	-	5807	24	FSM	ENSMUSG00000033487.15	ENSMUST00000162825.8	4100	24	-132	-1575	-132	-9	multi-exon	FALSE	canonical	3	32	junction_23	34.1903931941048	160	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGAGATATGTTTTTTG	7013	False	NA	NA	False	NA	NA	NA	72840534	72775394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72840361
7696	chr1	-	2879	7	NNC	ENSMUSG00000026374.15	novel	7063	6	NA	NA	39	1133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	478.855493163996	1741	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTGTGCTGCTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	118238927	118226246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_118227043_118227268_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
7697	chr9	+	4006	23	NIC	ENSMUSG00000032267.9	novel	4109	24	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_12	175.933525434753	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	NA	False	NA	NA	NA	48896711	48953810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
7698	chrX	+	4630	27	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14664	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	116.101669381349	1	137	19	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAGCTAAGCCTTGGAT	4695	False	NA	NA	False	NA	NA	NA	159921927	160041203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922092_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013001_160013171_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026428_160026545_160029252_160029364_160039561
7699	chr7	-	2770	20	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-12	-470	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	588.535098636326	3	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTGAGAATTTATATAGT	NA	False	NA	NA	False	NA	NA	NA	126165542	126146096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146496_126146767_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
7700	chr2	-	4309	7	Antisense	novelGene_ENSMUSG00000037523.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGCAACAGGTTGACCGC	NA	False	NA	NA	False	NA	NA	NA	131091206	131076033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_131076273_131080652_131080827_131082230_131082412_131083798_131083968_131085036_131085193_131087122_131087588_131088281
7701	chr3	+	2722	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	197	5	-2	-5	multi-exon	FALSE	canonical	3	697	junction_8	81.8057017542553	1015	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATAGCTTTTTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	157239993	157254042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
7702	chr4	+	2869	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-31	-8	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_5	189.730850299986	8	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCCATTAGGAACTGT	NA	False	NA	NA	False	NA	NA	NA	124923819	124949161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124935860_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
7703	chr17	-	3300	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	30	740	1	99	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	260	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79244465	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
7704	chr11	-	2530	11	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGACCAACTCAGCAAAGCT	NA	False	NA	NA	False	NA	NA	NA	78213206	78205202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78205625_78205789_78206468_78206726_78207045_78210665_78210896_78211154_78211279_78211386_78211497_78211866_78211950_78212087_78212242_78212321_78212399_78212511_78212591_78212951
7705	chr17	+	5160	24	NIC	ENSMUSG00000035842.11	novel	4480	25	NA	NA	0	-10	intron_retention	FALSE	canonical	3	152	junction_9	15.9206444189472	6	85	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGAACCTACATGAACTT	NA	False	NA	NA	False	NA	NA	NA	66430565	66459152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66457048_66457325_66457405_66457568_66457724_66457797
7706	chr17	-	4211	11	Genic_Genomic	ENSMUSG00000118071.2	novel	2911	1	NA	NA	-41992	-1986	multi-exon	FALSE	non_canonical	0	0	junction_1	0	245	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCGACGCCGATGCGCG	NA	False	NA	NA	False	NA	NA	NA	31826658	31783741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_31783861_31802667_31802776_31807431_31807560_31809574_31809746_31811072_31811247_31814195_31814297_31815767_31815866_31818486_31818617_31821758_31821834_31822158_31822332_31823724
7707	chr3	+	2310	12	FSM	ENSMUSG00000001416.14	ENSMUST00000167718.2	2056	12	3	-257	3	0	multi-exon	FALSE	canonical	3	2432	junction_7	97.6323005756931	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3844	False	NA	NA	False	NA	NA	NA	88204462	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
7708	chr5	-	1979	6	ISM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	-34	10006	25	2029	5prime_fragment	FALSE	canonical	3	1500	junction_1	128.235096599956	1	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGGCATAGAGGAGCCTT	NA	False	NA	NA	False	NA	NA	NA	92231551	92212364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
7709	chr15	-	3132	8	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	6	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	221.278013330908	1	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTCTCAATAAATGTTTG	NA	False	NA	NA	False	NA	NA	NA	83033524	83010206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83012248_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
7710	chr16	+	3440	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	47	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGACTACTGTGTTGAATT	NA	False	NA	NA	False	NA	NA	NA	13598608	13632700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13632271_13632377
7711	chr7	-	2449	4	ISM	ENSMUSG00000030695.17	ENSMUST00000205336.2	796	7	-74	-554	-13	-75	intron_retention	FALSE	canonical	3	19878	junction_3	194.738000628765	2	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTACAAGGCTCTGAGCG	NA	False	NA	NA	False	NA	NA	NA	126398355	126395285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126395928_126396025_126396081_126396508_126396721_126396815
7712	chr5	+	2003	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-64	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1125.09371137475	10	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	692	False	NA	NA	False	NA	NA	NA	77099559	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107301_77108989_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
7714	chr11	+	4813	31	FSM	ENSMUSG00000010342.17	ENSMUST00000060835.12	4763	31	-51	1	-51	-1	multi-exon	FALSE	canonical	1	19	junction_12	24.6584671056414	169	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGGTGCCAGTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	87295839	87446648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
7716	chr10	+	4193	5	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	3	0	intron_retention	FALSE	canonical	3	717	junction_1	119.685003237665	1	93	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21870584	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21872254_21872457_21873002_21873240
7717	chr2	-	3378	19	NNC	ENSMUSG00000027184.15	novel	6169	19	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	492.715632433602	4	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAATGAGTACTGGTG	NA	False	NA	NA	False	NA	NA	NA	103627946	103597455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627127_103627241_103627286_103627807
7719	chr2	+	1545	10	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-120	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	746.854705158429	1	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130117595	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816_130121039_130121100
7720	chr17	+	4480	14	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	240.689124053975	42	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGATGTTGCCTC	NA	False	NA	NA	False	NA	NA	NA	32255404	32281839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
7721	chr17	-	2897	10	NNC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	169.447759530413	134	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAAAAGCATCACTGAC	NA	False	NA	NA	False	NA	NA	NA	50600627	50586433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595622_50595734_50596119_50596267_50600434
7722	chr14	+	4006	22	NNC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	5	0	intron_retention	FALSE	non_canonical	0	0	junction_3	79.7564603685591	3	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCTCATTACTCGCGAC	NA	False	NA	NA	False	NA	NA	NA	20724415	20744920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726226_20729595_20729644_20733309_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
7723	chr9	+	2361	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	115.1589843756	125	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAACTAAATCCCTCTGG	NA	False	NA	NA	False	NA	NA	NA	108385257	108393120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391583_108391796_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
7724	chr3	-	3014	21	NNC	ENSMUSG00000042520.17	novel	3975	28	NA	NA	-5	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	325.137490148399	31	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCCTCTGCCCATTCTTG	3542	False	NA	NA	False	NA	NA	NA	89959787	89907590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928681_89946225_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
7725	chr11	-	2599	7	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	0	-4	intron_retention	FALSE	canonical	3	9657	junction_6	1713.44056084696	33	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTTTGGGCTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	69563141	69557766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69560073_69560958_69561574_69561753_69561803_69563104
7726	chr1	-	5541	28	FSM	ENSMUSG00000040648.16	ENSMUST00000042509.13	5882	28	319	22	319	-22	multi-exon	FALSE	canonical	0	0	junction_16	45.2326708589218	208	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATAAAACTCATGAGTGA	9153	False	NA	NA	False	NA	NA	NA	97697817	97633794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_97635556_97639447_97639574_97640728_97640870_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
7727	chr1	-	4887	20	NNC	ENSMUSG00000036086.17	novel	4741	21	NA	NA	-208	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	57.8563030322023	130	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATATTTTTAAATTAT	NA	False	NA	NA	False	NA	NA	NA	128030408	127881928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_128019562_128019748_128029511
7728	chr2	+	1119	1	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-4535	-1424	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTAGAACCCTCTAGAAGG	NA	False	NA	NA	False	NA	NA	NA	180373675	180374794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180373700_180374800
7729	chrX	-	2824	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	-554	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	491.329664793581	1	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGGTGCATTGAGAAC	NA	False	NA	NA	False	NA	NA	NA	23227934	23086078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23150798_23150912_23151396_23151442_23181368_23181441_23227732
7731	chr19	+	4110	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	239	4	7	-4	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	920	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCTCAGCCATCCTCTG	841	False	NA	NA	False	NA	NA	NA	6413958	6428056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
7732	chr8	-	3525	7	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	583.130536177126	37	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACATGTTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	125589746	125563689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125587781_125589632
7733	chr18	+	2656	20	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	160.380865943119	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9033	False	NA	NA	False	NA	NA	NA	32970346	32999453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32999051
7734	chr9	-	3833	18	NIC	ENSMUSG00000032480.18	novel	3806	19	NA	NA	0	-3	intron_retention	FALSE	canonical	3	264	junction_17	82.0280566399361	4	54	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGAGTGCTGCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	109930107	109913393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913796_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
7735	chr2	+	2877	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	13	0	13	0	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	1340	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	27405181	27426547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
7736	chr6	+	3538	20	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	-9	27110	-1	215	5prime_fragment	FALSE	canonical	3	275	junction_3	22.8414989005135	12	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCCATTTTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	71886035	71932349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676
7737	chr5	+	2555	14	NNC	ENSMUSG00000037313.17	novel	823	6	NA	NA	1528	0	intron_retention	FALSE	canonical	0	0	junction_4	341.102927428939	2	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33817505	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33817691_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
7738	chr14	+	3484	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	99.1548662446781	11	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGATTTCATGGTTTCTT	9631	False	NA	NA	False	NA	NA	NA	47535726	47560543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47557252_47558299
7739	chr6	-	2487	7	NNC	ENSMUSG00000039985.15	novel	2785	7	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	14	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148848019	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823891_148824132_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
7740	chr14	-	1965	8	ISM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-78	4234	-58	3261	5prime_fragment	FALSE	canonical	3	4955	junction_3	355.695581837581	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGCCACAGACACATGGA	NA	False	NA	NA	False	NA	NA	NA	36857287	36846282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
7741	chr14	-	2503	1	NIC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	10764	-1049	mono-exon	FALSE	NA	NA	NA	NA	NA	11	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTATTGTTTTATGTA	NA	False	NA	NA	False	NA	NA	NA	36846332	36843829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36843800_36846300
7745	chr6	-	2315	10	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	101	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1689.27492664095	5	20	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTGGATTTGAATCTT	8586	False	NA	NA	False	NA	NA	NA	145021809	144944881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953385_144953471_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
7747	chr7	-	4042	7	NNC	ENSMUSG00000025139.15	novel	3788	6	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	136.614319242978	12	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTGTTCTTGAGTAT	2780	False	NA	NA	False	NA	NA	NA	141456141	141435319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141445985_141446323_141446476_141446627_141456012
7748	chr16	+	3237	4	NNC	ENSMUSG00000041774.17	novel	1623	4	NA	NA	4385	40772	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4647	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGCTTTCCCAAAATG	NA	False	NA	NA	False	NA	NA	NA	16969231	17019337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_16972147_16977853_16978040_16994274_16994374_17019300
7749	chr7	+	3509	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	71	247	29	-247	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	1	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGAGTCTTCTTACTCTG	NA	False	NA	NA	False	NA	NA	NA	103868072	103884112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
7750	chr5	-	3650	14	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	17938	1	33	-1	3prime_fragment	FALSE	canonical	3	530	junction_12	235.821590371211	3	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110940025	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466_110939593_110939967
7752	chr16	+	2057	2	NIC	ENSMUSG00000033031.14	novel	1779	4	NA	NA	462	-413	intron_retention	FALSE	canonical	3	263	junction_1	0	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTATTTGCAACTTTCTT	NA	False	NA	NA	False	NA	NA	NA	48836661	48839601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48837855_48838737
7753	chr2	+	4930	16	Intergenic	novelGene_2861	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCTGTGCCGCCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	180303301	180343893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_180304375_180311181_180311382_180312059_180312147_180312652_180312810_180313186_180313706_180314073_180314211_180315022_180315127_180315265_180315383_180316481_180316644_180316760_180317221_180325601_180325819_180326751_180326968_180329266_180329589_180330614_180331446_180333653_180333841_180343752
7754	chr5	+	4693	7	FSM	ENSMUSG00000029203.17	ENSMUST00000201292.4	1529	7	9	-3173	-6	-1	multi-exon	FALSE	canonical	0	0	junction_2	633.60961079271	21	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTGAATTTTCCCCATTA	NA	False	NA	NA	False	NA	NA	NA	65694627	65756271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_65694802_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
7755	chr10	-	3954	15	NNC	ENSMUSG00000020097.15	novel	4070	15	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	164.080866075984	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAATCATTGGATGGTTG	NA	False	NA	NA	False	NA	NA	NA	60983485	60934426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_60936788_60937459_60937581_60938346_60938494_60938963_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959165_60959254_60982036_60982111_60983363
7756	chr8	+	2893	13	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	62	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	274.242124874272	34	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGTTGTGAGGCTCAC	5139	False	NA	NA	False	NA	NA	NA	107330072	107396870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390507_107395876
7757	chrX	+	4180	15	NNC	ENSMUSG00000031256.12	novel	3661	14	NA	NA	22	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	216.628443776576	2	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCACCCTACTTAGAAAT	NA	False	NA	NA	False	NA	NA	NA	132960104	132987565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980_132985053_132985134
7758	chr13	+	3857	30	NIC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	3	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_29	373.943912827241	2	112	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835608	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49887134
7759	chr4	+	4762	10	NNC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	1	-31	intron_retention	FALSE	non_canonical	0	0	junction_8	143.704515079802	5	168	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATAAAACTATTTAGTTCA	6	True	NA	NA	False	NA	NA	NA	21848064	21875225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21871306_21871364_21871609_21873585
7760	chr3	+	1350	6	Antisense	novelGene_ENSMUSG00000027984.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGCTGTGCACCACGG	NA	False	NA	NA	False	NA	NA	NA	131027073	131042141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_131027936_131029190_131029307_131034581_131034661_131036166_131036251_131038804_131038938_131042065
7762	chr2	-	4343	25	FSM	ENSMUSG00000027291.16	ENSMUST00000028752.8	4339	25	-4	0	-4	0	multi-exon	FALSE	canonical	3	237	junction_15	25.6031410833385	225	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCTTGAGCCTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	120183610	120146941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120180644_120180711_120183395
7763	chr1	-	6330	28	FSM	ENSMUSG00000056050.16	ENSMUST00000194543.4	6330	28	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_27	39.9558741524534	60	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	4043	False	NA	NA	False	NA	NA	NA	183150894	183107681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183132406_183132550_183135177_183135484_183137604_183140360_183143388_183143476_183146987_183147122_183150737
7764	chr1	-	6079	24	NNC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	24	-1856	intron_retention	FALSE	non_canonical	0	0	junction_5	487.028053752324	34	240	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAATTTGTGTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	55066599	55026187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034648_55035975_55036088_55036170_55036320_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039798_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
7765	chr2	+	3394	9	NNC	ENSMUSG00000027287.15	novel	2730	9	NA	NA	10	1797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	126.116451642916	153	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGTTCCTAATTTATTTC	NA	False	NA	NA	False	NA	NA	NA	120398161	120433533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756_120431237_120432352
7766	chr3	-	5001	13	FSM	ENSMUSG00000028273.16	ENSMUST00000029941.16	5016	13	15	0	15	0	multi-exon	FALSE	canonical	3	150	junction_4	21.3476514451174	184	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCACGCCTGGCCTTTTTT	7018	False	NA	NA	False	NA	NA	NA	142101439	141945350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
7769	chr12	-	2520	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	-6	2328	-6	-2328	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	2196	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGGCTTGTGTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	13299220	13269301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
7770	chr2	+	3655	21	NNC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	359.279483828398	2	87	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTCAGACTCCTTTGAT	7232	False	NA	NA	False	NA	NA	NA	29779835	29821755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783484_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810856_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
7771	chrX	-	4476	25	Antisense	novelGene_ENSMUSG00000000037.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	120	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGCCCAAGCTGCCAATC	NA	False	NA	NA	False	NA	NA	NA	160041204	159932944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_159933145_159936826_159936906_159954484_159954530_159960240_159960314_159961033_159961264_159970257_159970349_159975198_159975443_159985008_159985092_159992188_159992256_159992597_159992687_159996244_159996319_159998173_159998258_160006150_160006235_160008870_160008955_160010366_160010451_160011670_160011755_160013084_160013169_160014393_160014484_160017611_160017691_160020473_160020752_160022743_160022859_160024981_160025174_160026354_160026543_160029250_160029358_160039556
7772	chr17	-	569	1	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-2416	-1927	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGTTGACCATACCCAGA	NA	False	NA	NA	False	NA	NA	NA	24462273	24461704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24461700_24462300
7773	chr9	-	3229	3	ISM	ENSMUSG00000031922.13	ENSMUST00000124883.8	1643	9	6015	-382	-2257	-7	intron_retention	FALSE	canonical	3	225	junction_1	9	7	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAACAGCCAGCTAACAAA	NA	False	NA	NA	False	NA	NA	NA	13723967	13719097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_13720137_13721155_13721301_13721922
7774	chr1	+	4754	18	Antisense	novelGene_ENSMUSG00000099141.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	65	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGAGCTGTGCTCCCTT	NA	False	NA	NA	False	NA	NA	NA	77346014	77489583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77346308_77349545_77350485_77351407_77351564_77354050_77354241_77357496_77357653_77359506_77359716_77360159_77360219_77364430_77364622_77365110_77365222_77366667_77366729_77375130_77375243_77376274_77376433_77377833_77377962_77403187_77403528_77421500_77421658_77483184_77483849_77488319_77488391_77488824
7775	chr12	+	4368	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	-43	0	43	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	943	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAGGGAATTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	33479633	33491434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
7776	chr11	-	2498	6	ISM	ENSMUSG00000020142.13	ENSMUST00000004634.7	3872	8	-20	4650	9	-4650	5prime_fragment	FALSE	canonical	3	286	junction_2	12.5698050899765	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTAAGAAAAAAAATGATCT	7770	False	NA	NA	False	NA	NA	NA	20282704	20256854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
7779	chr14	+	4369	24	NNC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	107.8528192669	1	119	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCCCTCTCATTACTCGC	NA	False	NA	NA	False	NA	NA	NA	20724409	20744917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732870_20732920_20733155_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
7780	chr13	-	1911	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2380.72947254168	54	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5148	False	NA	NA	False	NA	NA	NA	58549933	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
7781	chr10	+	4543	28	NIC	ENSMUSG00000039994.16	novel	4457	29	NA	NA	4	0	intron_retention	FALSE	canonical	3	249	junction_22	47.7084768718526	189	36	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	6621	False	NA	NA	False	NA	NA	NA	128067963	128088808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
7782	chr10	+	4832	2	FSM	ENSMUSG00000049764.9	ENSMUST00000061617.7	5097	2	-4	269	0	-269	multi-exon	FALSE	canonical	3	112	junction_1	0	231	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATTTTTAAATCTTATT	NA	False	NA	NA	False	NA	NA	NA	75868483	75878799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_75868584_75874067
7783	chr5	-	4594	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	12	129	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	338	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTAGTTTTTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	74226397	74159257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
7785	chr4	+	2100	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	13	182333	multi-exon	FALSE	non_canonical	0	0	junction_1	61.5137179822517	2	63	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216507	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316905_147393104_147393185_147413438_147413566_147415724_147415863_147416528_147417312_147417806_147418058_147600176
7786	chrX	+	2814	26	NNC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	27	-101	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	355.134219134118	11	16	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGCCGCAGCCACAGC	NA	False	NA	NA	False	NA	NA	NA	143101045	143152666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119136_143119226_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
7787	chr15	+	2714	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	199	5	0	-5	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	28	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATGTTCTGCCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	81756708	81799329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
7788	chr2	-	4474	16	Antisense	novelGene_ENSMUSG00000026790.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCGGCTCCTCCCCGCTT	NA	False	NA	NA	False	NA	NA	NA	29814868	29779828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29779933_29782196_29782287_29783453_29783580_29791086_29791258_29792190_29792354_29793332_29793463_29793987_29794118_29802578_29802652_29804241_29804318_29804406_29804521_29804743_29804930_29805217_29805330_29807621_29807760_29810787_29810896_29811013_29811124_29812225
7789	chr3	+	3192	26	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	120.343840723155	493	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	54600287	54636184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600524_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
7790	chr1	+	2580	11	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-120	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	575.732064418858	22	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACATGTTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	4927916	4968126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578_4966637_4966721
7791	chr18	-	4431	23	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-193	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	97.5302029930614	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTTCCAGAGCATTTCT	NA	False	NA	NA	False	NA	NA	NA	62681959	62637224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647376_62647401_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681723
7792	chr9	+	3359	16	NNC	ENSMUSG00000032058.15	novel	3430	15	NA	NA	-8	-186	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	195.3755358278	425	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGTAAATGCTTTTAA	-1	True	NA	NA	False	NA	NA	NA	50768248	50792545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_50768399_50769135_50769227_50770150_50770252_50772580_50772708_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
7793	chr17	+	3073	5	NNC	ENSMUSG00000036036.16	novel	1991	6	NA	NA	3	-23	intron_retention	FALSE	non_canonical	0	0	junction_2	1328.79576590987	2	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGGGGAGGGGAGGTC	NA	False	NA	NA	False	NA	NA	NA	37313471	37321501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313670_37314177_37315575_37315644_37315796_37316950_37317087_37320310
7794	chrX	-	4758	8	NIC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-4	1457	intron_retention	FALSE	canonical	3	1225	junction_3	142.325008917145	56	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTGAATATTAATGTTAT	NA	False	NA	NA	False	NA	NA	NA	52759802	52743410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52752016_52752989_52753054_52753476_52753824_52759728
7796	chrX	-	3202	12	NNC	ENSMUSG00000031232.18	novel	1608	11	NA	NA	31	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	90.1128768740206	5	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATCTAAATTACATGG	NA	False	NA	NA	False	NA	NA	NA	105055474	105011701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012604_105012671_105012837_105014047_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
7797	chr11	+	3141	12	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	28	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	602.867459358787	5	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATTCTTAAACGAATCAG	NA	False	NA	NA	False	NA	NA	NA	109541774	109560473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544740_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255_109558354_109558398
7798	chr6	-	4578	32	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-54	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	161.790135258011	1	126	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3552	False	NA	NA	False	NA	NA	NA	125168507	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156487_125156564_125156657_125156793_125157817_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
7800	chr16	+	2738	20	NIC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	718.801345269483	2	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTCTCTGTCTATTTCC	NA	False	NA	NA	False	NA	NA	NA	20470462	20482161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
7801	chr2	+	2726	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	143	8	intron_retention	FALSE	canonical	3	132	junction_5	949.255291992096	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACACAAAACCAGA	NA	False	NA	NA	False	NA	NA	NA	130116554	130121208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120332
7803	chr19	+	2347	2	NNC	ENSMUSG00000071644.11	novel	724	4	NA	NA	1756	-1107	intron_retention	FALSE	non_canonical	0	0	junction_1	0	155	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCACTGCCATATTTTTG	3774	False	NA	NA	False	NA	NA	NA	8947335	8954736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8949314_8954367
7804	chrX	-	3278	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3697	-4	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	3	81	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTCTGCTCTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	23185115	23085528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
7805	chrX	+	3241	22	NIC	ENSMUSG00000031262.13	novel	3227	23	NA	NA	3	-2	intron_retention	FALSE	canonical	3	156	junction_8	43.2155384837434	429	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGGGTATTTCCGAATTT	NA	False	NA	NA	False	NA	NA	NA	133208906	133263383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_133208978_133209314_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
7807	chr2	+	2974	11	ISM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	15178	1	3893	-1	3prime_fragment	FALSE	canonical	3	273	junction_7	44.5026965475127	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTTTGGTTTTCCTGTTT	NA	False	NA	NA	False	NA	NA	NA	109126260	109172091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
7808	chr15	+	2621	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	74	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCACAGGCTACAGCCGCT	78	False	NA	NA	False	NA	NA	NA	36771195	36793827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793724
7809	chr4	-	2466	4	Fusion	ENSMUSG00000066000.13_ENSMUSG00000062518.8	novel	2594	5	NA	NA	-90	0	multi-exon	FALSE	non_canonical	0	0	junction_1	82.3259105965768	90	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147787100	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147698506_147702887_147702956_147725368_147725463_147786908
7810	chr1	-	2953	17	FSM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	-5	671	-5	-82	multi-exon	TRUE	canonical	3	321	junction_5	41.9044672439586	545	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTATTGTGTTGTACC	NA	False	NA	NA	False	NA	NA	NA	160898233	160868841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
7811	chrX	+	5762	22	FSM	ENSMUSG00000041229.16	ENSMUST00000046950.13	5728	22	-41	7	-23	-5	multi-exon	FALSE	canonical	3	62	junction_12	12.6336842339938	126	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCAATTTTGTTGCTTGA	NA	False	NA	NA	False	NA	NA	NA	150304141	150416848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
7812	chr11	-	5335	14	NNC	ENSMUSG00000020173.18	novel	5541	14	NA	NA	112	-3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_13	159.435060327202	286	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAACTGTCGTGTGGACTT	NA	False	NA	NA	False	NA	NA	NA	12414640	12186680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414564
7813	chr2	+	3724	17	NIC	ENSMUSG00000026843.16	novel	3648	18	NA	NA	7	-10	intron_retention	FALSE	canonical	3	48	junction_16	158.8952952222	628	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGCAAAGTGTTCTTAGT	500	False	NA	NA	False	NA	NA	NA	31462669	31507520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31505509
7814	chrX	-	3237	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	102	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	183.815463352445	4	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800216	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767552_149768922_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
7815	chr11	+	4041	11	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4324	intron_retention	FALSE	canonical	3	6361	junction_6	598.042047016763	7	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGGGGGAACTGTAGA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
7816	chr11	-	3878	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	2209	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	173	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGAAACCTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	95873434	95852052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
7817	chr1	-	3401	21	NNC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-1	-1850	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	331.251788674416	76	9	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGTTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	55066554	55026181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55026652_55027097_55027315_55029461_55029591_55037358_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
7818	chr16	+	2935	5	NNC	ENSMUSG00000080717.11	novel	669	6	NA	NA	-261	2653	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	52.3754474921217	5	81	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	97798253	97813853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97812743_97812913
7819	chr10	-	2535	16	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	931.523802999985	5	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	86541324	86526703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530401_86531703_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
7820	chr10	-	3137	19	NIC	ENSMUSG00000040354.15	novel	3065	20	NA	NA	57	-7	intron_retention	FALSE	canonical	3	1496	junction_9	166.436507747282	273	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAAGCCGAGCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	127147490	127132101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127132310_127132409_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
7821	chr11	-	2597	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.815131191409	66	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239136	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191820_75192103_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
7822	chr11	+	4687	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8362	-1	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	984	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATCTCTGTTCATGA	9494	False	NA	NA	False	NA	NA	NA	104200496	104222915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
7823	chr18	+	2963	18	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-11	-4	intron_retention	FALSE	canonical	2	15	junction_4	257.954382920353	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTGGATTCCAAATT	6238	False	NA	NA	False	NA	NA	NA	34758048	34765853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34760068_34760605_34760745_34760899_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
7824	chr8	-	4742	16	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	7051	-251	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	272.477228406339	3	181	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGTAGTTTTTGTT	4361	False	NA	NA	False	NA	NA	NA	111558177	111537121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548228_111549999_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111556150
7826	chr2	+	3380	20	Antisense	novelGene_ENSMUSG00000027014.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.223296878269436	673	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGAGAAAAGAACATGTGAG	232	False	NA	NA	False	NA	NA	NA	77725992	77776685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_77726923_77734139_77734378_77734466_77734570_77735700_77735827_77737423_77737579_77738411_77738490_77741853_77741915_77745840_77745922_77747398_77747508_77751161_77751225_77751310_77751518_77751753_77751889_77754482_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761886_77763038_77763108_77766936_77767065_77776491
7827	chr1	+	618	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	42	2608	42	5	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	210	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTTTGTAGATTTCT	NA	False	NA	NA	False	NA	NA	NA	180978537	180993951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
7829	chr2	-	2800	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	10	0	10	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	1747	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	156022148	155989158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
7831	chr11	+	4679	23	NIC	ENSMUSG00000017119.21	novel	4789	24	NA	NA	-8	-7	intron_retention	TRUE	canonical	3	23	junction_1	55.8982251082084	5	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAACCAAGCTGTTTAT	261	False	NA	NA	False	NA	NA	NA	101442966	101472770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
7832	chr5	+	2155	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	1106.56404077277	16	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAAGAGTGAAGCTACT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874503_129874624
7833	chr5	+	2818	4	NNC	ENSMUSG00000029267.18	novel	706	4	NA	NA	-4938	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	789.805461279337	23	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108208601	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221339_108252291_108252397_108254453
7834	chr2	-	5434	15	FSM	ENSMUSG00000075415.14	ENSMUST00000100208.9	1859	15	-191	-3384	3	-1420	multi-exon	FALSE	canonical	3	84	junction_6	25.508001945768	209	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTGTATTTTAAGTGA	4783	False	NA	NA	False	NA	NA	NA	31032005	30919626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
7835	chr19	-	2925	22	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	386	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCGGCGCAAGAAATTCGC	NA	False	NA	NA	False	NA	NA	NA	38956721	38919412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38919519_38919833_38919955_38923855_38923979_38926847_38926905_38928912_38928950_38929038_38929104_38930895_38930935_38932155_38932283_38933846_38934018_38935168_38935311_38938629_38938827_38940276_38940374_38941984_38942147_38943132_38943273_38943355_38943490_38945471_38945561_38945639_38945762_38947487_38947604_38948111_38948273_38953040_38953136_38953848_38953927_38956175
7836	chr10	+	6815	34	Antisense	novelGene_ENSMUSG00000020196.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	40	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGGCAAAGGCTTCTGCT	NA	False	NA	NA	False	NA	NA	NA	75481996	75590176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_75482522_75482708_75482938_75483892_75484058_75488711_75488979_75491201_75491273_75492606_75493286_75493628_75493726_75494466_75494631_75520124_75520240_75530548_75530880_75535745_75535930_75549286_75549468_75551432_75551579_75553265_75553533_75557111_75557379_75561095_75561236_75561379_75561587_75562688_75562856_75568235_75568349_75569452_75569609_75570797_75571048_75573160_75573350_75574044_75574206_75575186_75575348_75575853_75575935_75578080_75578300_75579038_75579170_75581059_75581228_75582317_75582607_75583657_75583810_75585877_75586008_75587269_75587450_75589209_75589343_75590076
7837	chr14	+	4102	23	NNC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	0	-5	intron_retention	FALSE	canonical	0	0	junction_4	78.0620647332187	2	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGTATCCCTCTCATTAC	NA	False	NA	NA	False	NA	NA	NA	20724403	20744913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732844_20733403_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
7838	chr10	-	2881	11	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	62	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGCCCAGCCCAGGGTCC	NA	False	NA	NA	False	NA	NA	NA	128198336	128173635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173827_128185619_128185672_128186300_128186409_128187066_128187132_128188540_128188673_128188889_128189079_128194200_128194401_128195036_128195167_128195300_128195403_128195810_128196021_128196834
7839	chr10	+	4029	21	NNC	ENSMUSG00000036875.16	novel	4122	21	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	86.7511383210618	11	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACTGAGTCATTTTTCA	NA	False	NA	NA	False	NA	NA	NA	62782815	62809963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554_62805657_62807622_62807770_62809029
7840	chr11	-	3612	17	NIC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	93	junction_13	83.8961178705546	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3526	False	NA	NA	False	NA	NA	NA	115494732	115475080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482521_115483257_115483357_115485531_115485608_115485734_115485820_115494653
7841	chr1	-	4128	7	NIC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	-21	-638	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	112.85241099182	64	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGTCTGCCCTGCGGAC	8624	False	NA	NA	False	NA	NA	NA	88205322	88190830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_88194381_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
7842	chr14	+	2408	8	Antisense	novelGene_ENSMUSG00000060373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCCCGAGCTCCTCTGC	6100	False	NA	NA	False	NA	NA	NA	52311004	52341460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52312451_52312724_52312873_52313069_52313186_52314861_52315023_52318718_52318765_52319284_52319361_52321571_52321872_52341345
7843	chr8	-	5418	14	Genic_Genomic	ENSMUSG00000098184.2	novel	972	1	NA	NA	-78610	-893	multi-exon	FALSE	non_canonical	0	0	junction_1	0	660	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCAGGCGCCGCGAGCGCC	NA	False	NA	NA	False	NA	NA	NA	122755994	122677305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_122677387_122701164_122701302_122702635_122702729_122705291_122705493_122716692_122716811_122718266_122718441_122723776_122724019_122727702_122727869_122732288_122732422_122733829_122733900_122734489_122734527_122747253_122747379_122750736_122750882_122752298
7844	chr1	+	2472	11	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	20	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	575.732064418858	5	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATACATGTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	4928056	4968125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578_4966785_4966836
7846	chr8	-	3810	18	FSM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	-17	-147	-17	6	multi-exon	FALSE	canonical	3	416	junction_13	64.9317448394025	681	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73229087	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
7847	chr14	+	3025	6	NIC	ENSMUSG00000040618.8	novel	2417	9	NA	NA	-4	1	intron_retention	FALSE	canonical	3	1534	junction_4	74.7850252390143	1	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGGACTCCCCATGCTG	9010	False	NA	NA	False	NA	NA	NA	55777841	55786330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55782505_55782663_55782883_55785153_55785292_55785496
7848	chr15	-	2905	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-77	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	711.346005041772	2	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283872	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248926_81248990_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
7849	chr5	+	2096	8	NIC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-168	0	intron_retention	FALSE	canonical	1	9	junction_5	1186.06683227053	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	588	False	NA	NA	False	NA	NA	NA	77099455	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77112288_77112470_77114093_77114253_77114494
7850	chr1	+	3007	3	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	4541	junction_2	828.5	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863375_160863552_160865843_160866026
7852	chr19	-	823	4	ISM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	3	13217	3	-13217	5prime_fragment	FALSE	canonical	3	3253	junction_1	110.291532867316	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAGCATTAGTAGTACAC	3766	False	NA	NA	False	NA	NA	NA	7017332	7011286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_7011673_7012014_7012157_7012863_7013074_7017247
7853	chr19	-	1621	10	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	7213	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1075.35042809769	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	9321	False	NA	NA	False	NA	NA	NA	7010122	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999494_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848
7854	chr1	+	4341	13	NNC	ENSMUSG00000026427.17	novel	2153	15	NA	NA	25	-5	intron_retention	FALSE	canonical	0	0	junction_5	252.917421745166	33	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACATGGGTGTTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	131080942	131099242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086034_131088136_131088362_131089021_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098659
7855	chr17	+	2959	14	NIC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-52	0	intron_retention	FALSE	canonical	3	1213	junction_1	80.2879433424088	8	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165696	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
7856	chr2	-	2749	13	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGACCAGCCGGCAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	152122359	152068469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068578_152092322_152092531_152096128_152096240_152099295_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118950_152120884
7857	chr14	-	3861	15	FSM	ENSMUSG00000114797.2	ENSMUST00000041905.8	3913	15	54	-2	-8	2	multi-exon	FALSE	canonical	3	173	junction_2	25.178546099278	397	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTAGGTCTCAGCAGT	NA	False	NA	NA	False	NA	NA	NA	60488902	60455524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_60457608_60459031_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
7858	chr16	-	2785	13	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-2	112	intron_retention	FALSE	canonical	3	4287	junction_7	371.163261472181	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCGTCTGTTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	87292749	87280763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283409_87283482_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
7860	chr2	-	2284	10	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	479.508956648541	2	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGCTAAAAGCTGGTCTA	NA	False	NA	NA	False	NA	NA	NA	154916369	154901240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902301_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
7861	chr19	-	3385	4	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	-9	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	109.137018874848	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATCTTAGAAATTTATTT	1977	False	NA	NA	False	NA	NA	NA	8796605	8786433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8789203_8793217_8793401_8795836_8796049_8796384
7862	chrUn_JH584304v1	-	2916	8	Intergenic	novelGene_4654	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_4	327.856613756187	1	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTACCATAGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	59716	52673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55212_55293_55400_55507_55702_56985_57152_58563_58836_59591
7863	chr4	+	4874	15	NIC	ENSMUSG00000028522.17	novel	4703	14	NA	NA	-106	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	47.5884246772816	257	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTGTGGTGTCTAGTT	2778	False	NA	NA	False	NA	NA	NA	102971852	103022949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_102972021_102972756_102972858_102975435_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
7864	chr19	-	3511	6	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	2	intron_retention	FALSE	canonical	3	1340	junction_2	97.6348298508273	14	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCTGGAACTTTGCTT	6567	False	NA	NA	False	NA	NA	NA	4062665	4057499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4061429_4062550
7865	chr7	-	4397	10	NNC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-18	-75	intron_retention	TRUE	non_canonical	0	0	junction_3	1000.66864065737	9	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCTGTGTTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	89629785	89603942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_89604272_89604738_89605622_89611463_89612514_89612560_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89629619
7866	chr11	-	3600	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.083078726175	1133	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1315	False	NA	NA	False	NA	NA	NA	20062934	20012303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20014255_20014306_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
7867	chr3	-	3788	4	NIC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	3	0	intron_retention	FALSE	canonical	3	355	junction_2	342.240656069186	5	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6157	False	NA	NA	False	NA	NA	NA	153618589	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153615236_153615897_153617670_153618570
7868	chr9	-	2696	18	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	436.64870315323	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGACCAGAGGAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	36678929	36643716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662631_36663661_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
7870	chr8	-	2067	7	Antisense	novelGene_ENSMUSG00000060098.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAGCATGGAGAGGAGAC	NA	False	NA	NA	False	NA	NA	NA	106979100	106969989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_106970481_106971287_106971377_106973692_106973855_106974978_106975054_106976937_106977099_106977826_106977924_106978108
7871	chr8	-	1492	10	Antisense	novelGene_ENSMUSG00000060098.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGGGTGGGGCGTCGAG	NA	False	NA	NA	False	NA	NA	NA	106969023	106937659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_106937714_106939006_106939202_106943873_106943913_106946551_106946700_106953840_106953949_106961476_106961589_106963421_106963666_106963851_106964036_106967818_106967943_106968739
7872	chr9	-	3708	19	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	63	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	8582	False	NA	NA	False	NA	NA	NA	21313091	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299093_21299327_21299447_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308764_21308964_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21311747
7873	chr17	+	912	2	ISM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	2889	-241	2802	241	3prime_fragment	FALSE	canonical	3	1322	junction_1	0	2	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTATGTGTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	57300193	57303429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57300554_57302877
7874	chr15	-	4343	26	NNC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	25	1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_22	45.7890816680134	22	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCAGCTCTCTGCGA	NA	False	NA	NA	False	NA	NA	NA	76524104	76510436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76522878_76523224_76523647_76523791_76523877_76523974_76524053
7875	chr15	-	2882	10	NIC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	38	-85	intron_retention	FALSE	canonical	3	46	junction_9	1894.59394652844	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGCGTCTGCAGTTAC	152	False	NA	NA	False	NA	NA	NA	31601647	31591030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31595990_31597556_31597722_31598145_31598207_31601447
7876	chr8	+	5272	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	86	-3069	-2	-12	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	28	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAAGAATGACAATTGT	NA	False	NA	NA	False	NA	NA	NA	122677316	122755985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
7877	chr2	+	3027	18	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	25	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGCGGATCCCGCCAAAAA	1066	False	NA	NA	False	NA	NA	NA	4995537	5017541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4996949_4997688_4997835_4998553_4998667_4999379_4999496_5000533_5000673_5001910_5002144_5003344_5003438_5004494_5004594_5005672_5005868_5006074_5006194_5008820_5008985_5009751_5009922_5011153_5011272_5012160_5012244_5013290_5013617_5015492_5015592_5017520
7879	chr14	-	6487	21	FSM	ENSMUSG00000034235.18	ENSMUST00000022356.12	6580	21	82	11	82	-11	multi-exon	FALSE	canonical	3	44	junction_20	12.721929885045	116	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTAATCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	20691049	20598990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20600529_20602141_20602329_20606314_20606434_20610913_20612311_20614935_20615132_20616010_20616131_20620315_20620484_20623835_20623970_20626540_20626773_20627002_20627381_20627522_20627655_20633389_20633559_20636067_20636218_20638142_20638290_20638400_20638507_20639251_20639335_20639441_20639556_20641546_20641682_20654119_20654213_20657149_20657974_20690984
7880	chr6	+	2024	6	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	0	intron_retention	FALSE	non_canonical	0	0	junction_4	2164.51143679122	46	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684552	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690262_122690379_122690534_122690576
7881	chr4	+	4973	3	NNC	ENSMUSG00000028936.16	novel	581	4	NA	NA	-38	5	intron_retention	FALSE	non_canonical	0	0	junction_2	2121.5	16	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTATCCTTGCATCTCTG	NA	False	NA	NA	False	NA	NA	NA	152410271	152416942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152410353_152411937_152412900_152413012
7882	chr6	-	2647	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	28	22	4	0	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	2018	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847937	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
7883	chr3	+	4077	15	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	3583	-10	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_5	330.880527485961	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAATCAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	157746079	157774114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157746260_157747222_157747297_157747499_157747571_157749197_157749328_157754037_157754253_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
7884	chr4	-	3927	15	NNC	ENSMUSG00000037443.14	novel	3893	14	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	140.299479249037	277	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	133914356	133857168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133903922_133904024_133914253
7886	chr9	+	2695	21	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	4261	55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	170.295118837857	10	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAACTTGCTTTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	98450044	98470369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470294
7887	chr5	-	3081	4	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	216	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.7977071615021	3	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGGTATC	6347	False	NA	NA	False	NA	NA	NA	109838691	109822410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109825239_109826404_109826441_109826628_109826756_109838601
7889	chr9	+	2531	23	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	intron_retention	FALSE	canonical	3	468	junction_2	40.2082646411723	1643	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385257	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
7890	chr1	+	2245	15	Antisense	novelGene_ENSMUSG00000064823.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCCCCGGGTCGCGCGA	NA	False	NA	NA	False	NA	NA	NA	86278214	86286486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86278416_86278530_86278756_86279086_86279216_86279919_86280039_86280228_86280354_86280845_86281002_86281452_86281578_86282741_86282866_86283772_86283915_86284091_86284180_86284277_86284464_86284678_86284760_86284945_86285173_86285826_86285945_86286287
7891	chr13	+	4975	18	NNC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	25	-21	intron_retention	FALSE	non_canonical	0	0	junction_15	52.7920120831967	94	23	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGCCTCTTGCTACC	NA	False	NA	NA	False	NA	NA	NA	35059511	35090026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35085657_35085986_35086115_35086612_35088073_35089865
7892	chr11	-	2999	19	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	0	-8	intron_retention	FALSE	canonical	3	632	junction_6	79.2766876822975	16	36	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAGATAACTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	106146622	106139975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
7893	chr10	+	2603	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	2	-3	2	-2	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	517	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTGTCATGTGTTAACT	NA	False	NA	NA	False	NA	NA	NA	21854572	21875800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
7894	chr10	+	2620	12	FSM	ENSMUSG00000019970.16	ENSMUST00000092673.11	2576	12	-42	-2	-42	0	multi-exon	FALSE	canonical	3	12	junction_1	274.769775907151	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21869746	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870081_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
7895	chr1	+	3960	23	NIC	ENSMUSG00000026083.13	novel	7797	24	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_20	145.107483673937	4	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTTCTACAGATTTTG	1403	False	NA	NA	False	NA	NA	NA	38037204	38091102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38089267_38089407_38090203_38090366_38090686
7896	chr10	+	2985	19	NIC	ENSMUSG00000019977.17	novel	2793	18	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	306.115592828656	1095	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTATTTCTTAGACA	NA	False	NA	NA	False	NA	NA	NA	21171910	21244797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997_21185214_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
7897	chr7	+	3064	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	226	-248	intron_retention	FALSE	non_canonical	0	0	junction_7	298.112159052596	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	3990	False	NA	NA	False	NA	NA	NA	103874939	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882813_103882857_103882976_103883130
7899	chr7	-	1543	7	FSM	ENSMUSG00000030629.16	ENSMUST00000209117.2	2955	7	133	1279	59	9	multi-exon	FALSE	canonical	3	577	junction_5	69.5045961709648	438	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTTTCCCTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	84339032	84264252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
7900	chr3	-	816	5	Antisense	novelGene_ENSMUSG00000041355.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTTCTTCTGCTTGACT	7885	False	NA	NA	False	NA	NA	NA	88495721	88487248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88487336_88488274_88488380_88491083_88491119_88494196_88494250_88495185
7901	chr12	-	3907	24	NIC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-10	-2334	intron_retention	FALSE	canonical	3	1685	junction_14	175.8833283162	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299174	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
7903	chr8	-	2479	15	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	47	4	intron_retention	FALSE	canonical	2	3	junction_11	899.585913810644	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTATGGTACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	26337675	26306909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324915_26325083_26326027_26326117_26329770_26330104_26337606
7905	chr14	-	3231	9	Antisense	novelGene_ENSMUSG00000056234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	35	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCATTCTGCTCACTGTTC	NA	False	NA	NA	False	NA	NA	NA	31901201	31892724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_31892856_31894257_31894400_31894562_31894637_31894884_31894955_31895357_31895446_31896344_31896489_31897893_31898910_31899186_31899329_31899777
7906	chrX	-	2808	7	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3359	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	380.115954530836	5	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227933	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086942_23101612_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
7907	chr5	-	2910	5	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	934	junction_1	88.3246851112417	349	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	NA	False	NA	NA	NA	100186769	100182579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
7908	chrX	-	3481	25	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	162.30320883218	1	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTCTGGTGTTCGTGTA	NA	False	NA	NA	False	NA	NA	NA	59223621	59101317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154835_59155921_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
7909	chr8	-	2222	15	NIC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	32	3	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	895.061929222139	1	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTATGGTACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	26337690	26306910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
7911	chr4	+	3569	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	18	1	18	-1	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	539	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTTTTTACTGAAGGA	NA	False	NA	NA	False	NA	NA	NA	116414872	116451078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
7912	chr13	-	2363	4	Antisense	novelGene_ENSMUSG00000074868.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCAACGGAGAGAAACAGA	NA	False	NA	NA	False	NA	NA	NA	62198815	62163779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62163866_62194993_62195119_62195303_62195370_62196729
7913	chr12	+	3145	11	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	188.637774583989	13	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	NA	False	NA	NA	NA	102724251	102743966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736113_102737477_102737540_102741952
7914	chr11	+	4663	16	FSM	ENSMUSG00000020823.17	ENSMUST00000090433.6	4654	16	-12	3	-12	0	multi-exon	FALSE	canonical	3	319	junction_5	24.9420662068455	302	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGTGTCCTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	117006051	117050091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
7915	chr6	+	3096	20	Antisense	novelGene_ENSMUSG00000038429.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTACCTAGTACCGCCCC	NA	False	NA	NA	False	NA	NA	NA	124791987	124806395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124792618_124793938_124794032_124794280_124794435_124794629_124794778_124794852_124794997_124795508_124795627_124796330_124796424_124796948_124797128_124797376_124797529_124798039_124798165_124798282_124798371_124798847_124798918_124799485_124799685_124800417_124800515_124801097_124801284_124801521_124801663_124801812_124801946_124802069_124802142_124803261_124803387_124806246
7916	chr16	+	2728	3	Genic_Genomic	ENSMUSG00000086083.2	novel	869	2	NA	NA	-6394	-309	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGCCGAGGGGCTTGGGG	NA	False	NA	NA	False	NA	NA	NA	33780214	33787373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_33782607_33784137_33784298_33787197
7920	chr7	-	2931	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	5	1	intron_retention	FALSE	canonical	0	0	junction_14	498.173930777316	5	37	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153788	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143124700_143124816_143125220_143125334_143128249_143128337_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
7921	chrX	+	3883	22	NNC	ENSMUSG00000000037.18	novel	2931	23	NA	NA	2	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	113.824386357692	1	57	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTTATTAAATAACCACAG	NA	False	NA	NA	False	NA	NA	NA	159900190	160041180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159900321_159936828_159936907_159985002_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
7922	chr19	+	4235	9	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-5	-90	intron_retention	FALSE	canonical	3	152	junction_4	37.0031670941826	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGGTCAAGGCCCCGTC	NA	False	NA	NA	False	NA	NA	NA	10502624	10524927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10502692_10503315_10503425_10509144_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
7923	chr2	+	2682	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-46	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	404.06324922591	3	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGAAACGATGTCCTTAT	NA	False	NA	NA	False	NA	NA	NA	84867531	84877445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870283_84870662_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
7926	chrX	-	3310	15	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	35.9401429817832	5	72	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGAAAGCAAAGGGAAACC	NA	False	NA	NA	False	NA	NA	NA	49724135	49647023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49647262_49651556_49651832_49653689_49653845_49656416_49656571_49658153_49659169_49661891_49662019_49662100_49662395_49665962_49666013_49666747_49666902_49667720_49667820_49670279_49670434_49715313_49715387_49716083_49716187_49719767_49719873_49723821
7927	chr6	-	3215	12	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	10	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	224.222734598309	24	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGTTACCTTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	95695771	95450008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95451322_95451444_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
7928	chr5	-	2671	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	462.5	39	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963451	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938521_135939367_135940506_135963176
7929	chrX	+	3624	7	ISM	ENSMUSG00000015291.11	ENSMUST00000146013.8	3696	9	256	13	1	-11	intron_retention	FALSE	canonical	3	736	junction_5	44.7638867342365	3	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTGAAACTTAAGCCTG	6218	False	NA	NA	False	NA	NA	NA	73348873	73355453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73353741_73353995
7933	chr10	-	4047	20	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	163	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	88.3748312774859	70	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATACTGCTTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	61219146	61155442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184166_61184379_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
7934	chr4	+	3532	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	-37	-416	-36	416	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	467	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGGAATGCCAGATTCAG	NA	False	NA	NA	False	NA	NA	NA	99603864	99652113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
7935	chr12	-	3080	9	NNC	ENSMUSG00000041645.15	novel	3063	9	NA	NA	14	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	366.59887394126	854	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGGGTGTTGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	103392064	103374239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385744_103390130_103390857_103391795
7937	chr14	+	3147	7	NIC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	40	-9	intron_retention	FALSE	canonical	3	6	junction_2	757.553170117818	4	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTCCTATATTTTTTAA	8931	False	NA	NA	False	NA	NA	NA	55777762	55787465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496
7938	chr5	+	3679	20	NIC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	6	-12	intron_retention	FALSE	canonical	3	453	junction_14	43.9830614588259	161	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTGCATCATTCCTATA	NA	False	NA	NA	False	NA	NA	NA	45827266	45857457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
7940	chr5	-	2666	20	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	101.872387718662	529	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGGCCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	30359988	30324427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337278_30339091_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
7941	chr11	-	4866	13	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	1.10554159678513	76	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGACACCCTCGTTCTA	NA	False	NA	NA	False	NA	NA	NA	80296692	80274146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274319_80276725_80276858_80278627_80278765_80279801_80279970_80280078_80280156_80282155_80282234_80282665_80282817_80285109_80285355_80285924_80286087_80286214_80286397_80286614_80286700_80289239_80289292_80293467
7942	chr15	-	3678	15	NIC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	-6	-13	intron_retention	FALSE	canonical	3	698	junction_14	53.3582424824537	25	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTAGTTGCAGAGGCCC	NA	False	NA	NA	False	NA	NA	NA	81614108	81588466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
7943	chr12	-	3430	19	NIC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	63	-457	combination_of_known_splicesites	FALSE	canonical	2	9	junction_7	152.846328055338	10	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGAACTGTGCTAGGCC	2741	False	NA	NA	False	NA	NA	NA	59058740	59005625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025350_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
7944	chr19	-	3825	22	NNC	ENSMUSG00000024999.8	novel	3977	21	NA	NA	33	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.4590526898511	308	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTAGTCTTACGAGGT	2321	False	NA	NA	False	NA	NA	NA	38807648	38776572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_38776581_38776698_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
7945	chr6	-	3050	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	98	24	-14	-24	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	11	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9193	False	NA	NA	False	NA	NA	NA	88495789	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
7946	chr14	-	2636	8	NIC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-2	2	combination_of_known_junctions	FALSE	canonical	3	714	junction_5	1223.61628639314	10	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGAAGCTGGTGTGTAC	8744	False	NA	NA	False	NA	NA	NA	52341466	52310999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
7947	chr18	+	4087	10	NNC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	-7	-16	intron_retention	FALSE	non_canonical	0	0	junction_3	77.0958998765679	19	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGACTCTGTGAATGGT	NA	False	NA	NA	False	NA	NA	NA	63110939	63132505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_63111096_63113536_63113605_63115689_63115796_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63128164_63129887
7948	chr11	-	2169	10	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.25707872210942	63	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACACAAAATGGCCGACAC	NA	False	NA	NA	False	NA	NA	NA	80287074	80274156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274319_80276725_80276854_80278625_80278765_80279801_80279970_80280078_80280156_80282155_80282225_80282657_80282817_80285109_80285355_80285924_80286087_80286214
7949	chr1	+	3705	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	168	0	-129	0	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	2	103	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3315	False	NA	NA	False	NA	NA	NA	180396661	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
7950	chr13	+	2102	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	423	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAAACCACTCTTGGTA	NA	False	NA	NA	False	NA	NA	NA	3588127	3615810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615242_3615316
7951	chr8	-	4848	5	FSM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	33	2	33	-2	multi-exon	FALSE	canonical	3	150	junction_1	24.3554408705735	488	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGCATCCAGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	71112355	71099086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
7952	chr11	-	3317	28	FSM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	0	7	0	-3	multi-exon	FALSE	canonical	3	142	junction_26	264.162864923118	1447	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTCTGCCTTGGTTTGC	8466	False	NA	NA	False	NA	NA	NA	102771793	102729305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
7953	chr2	-	5077	27	FSM	ENSMUSG00000036893.18	ENSMUST00000102938.10	4680	27	-13	-384	3	22	multi-exon	FALSE	canonical	3	154	junction_23	33.3131324390158	208	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTTCATTATGACAC	9600	False	NA	NA	False	NA	NA	NA	24809616	24680784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777082_24809565
7954	chr16	-	1929	15	Antisense	novelGene_ENSMUSG00000006998.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.772618130456569	1	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACATGATTTCTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	20482164	20474412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20474452_20474628_20474691_20475290_20475439_20475616_20475723_20476229_20476359_20476722_20476810_20478153_20478318_20478427_20478526_20478701_20478850_20479089_20479173_20480311_20480488_20480569_20480658_20480839_20480970_20481371_20481489_20481810
7957	chr11	+	2437	13	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-33	180	intron_retention	FALSE	canonical	3	4673	junction_2	336.499587254163	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCATATTAACTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	22940592	22953331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22952402_22952816_22952931_22953136
7958	chr15	-	2573	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	1528.4851702112	8	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	377	False	NA	NA	False	NA	NA	NA	36609217	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557_36608803_36609047
7959	chr11	-	3472	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9034	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_15	428.607460919144	1	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTATCTGCATTCAAGT	390	False	NA	NA	False	NA	NA	NA	106615254	106545045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606191_106615168
7960	chr4	-	2617	18	NIC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_13	190.10341385277	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120427469	120397064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
7963	chr7	+	2973	14	NNC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	346.305676103894	20	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79944196	79966002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950859_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
7964	chr15	-	4158	27	NNC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	48.2967436147302	180	27	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCAGCTCTCTGCGA	NA	False	NA	NA	False	NA	NA	NA	76524119	76510436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520386_76520424_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
7965	chr5	-	4767	25	NNC	ENSMUSG00000029191.17	novel	4699	25	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_24	132.962609614717	817	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	3	True	NA	NA	False	NA	NA	NA	65492984	65419194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492818
7966	SIRV7	-	2460	5	FSM	SIRV7A	SIRV701	2462	5	0	2	0	0	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	5	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	147923	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
7968	chr10	+	2555	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	3	intron_retention	FALSE	canonical	3	717	junction_1	92.3525852372309	599	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATGTGTTAACTTTGTA	NA	False	NA	NA	False	NA	NA	NA	21870581	21875805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
7969	chr2	+	3493	17	ISM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	10347	9	10337	-8	3prime_fragment	FALSE	canonical	3	582	junction_9	51.3231185724328	1	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAAAGTGTTCTTAGTCT	2876	False	NA	NA	False	NA	NA	NA	31473175	31507522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
7970	chr10	-	2961	16	NNC	ENSMUSG00000020097.15	novel	4070	15	NA	NA	1	-985	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.057798793643	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCCCTTTTAGGGATTG	NA	False	NA	NA	False	NA	NA	NA	60983452	60935408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_60935466_60935585_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
7973	chr11	+	3335	21	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	1	-7	intron_retention	FALSE	non_canonical	0	0	junction_5	641.569980594479	2	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTTTCTTATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	23206041	23246226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227039_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234357_23236760_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
7974	chr1	+	2406	8	NIC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-24	-4	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	278.899074716197	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4878094	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_4878206_4878677_4878710_4898806_4898873_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
7975	chrX	-	3224	11	ISM	ENSMUSG00000031297.15	ENSMUST00000073927.5	2232	12	0	5	0	-5	intron_retention	FALSE	canonical	3	1326	junction_4	61.814318729563	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTGTAAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	100128978	100122832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476
7976	chr9	-	3166	20	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6357	37229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGCCACGCGGT	5014	False	NA	NA	False	NA	NA	NA	21316659	21279308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279395_21298993_21299093_21299403_21299446_21299818_21300046_21303585_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308761_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21314431_21314686_21315354_21315486_21315989
7977	chr13	-	4816	4	FSM	ENSMUSG00000058093.14	ENSMUST00000138725.3	855	4	26	-3987	-16	-3	multi-exon	FALSE	canonical	3	11	junction_3	22.5437845585479	116	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCCTGGTTTGGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	67757780	67737560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757661
7978	chr6	+	3475	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	-13	20	-13	-20	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	3	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGCAGCCTTACTGTC	5222	False	NA	NA	False	NA	NA	NA	28480333	28888811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
7979	chr9	+	3278	22	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCGGCGGCGACGCTGCA	NA	False	NA	NA	False	NA	NA	NA	61824572	61854025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826257_61827160_61827239_61828299_61828529_61831186_61831503_61831915_61832093_61832250_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61842662_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
7980	chrX	-	2783	25	Intergenic	novelGene_4065	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGGCGGCTCGCACCAAT	NA	False	NA	NA	False	NA	NA	NA	143152666	143100995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101116_143102996_143103054_143105003_143105145_143119326_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256_143134372_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147102_143150892_143150933_143152553
7981	chr1	-	2303	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2534.80711309396	1	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287098	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280010_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284398_86284678_86285175_86285828_86285946_86286927
7982	chr19	+	3058	13	NNC	ENSMUSG00000024949.18	novel	4353	13	NA	NA	7	-5	intron_retention	FALSE	non_canonical	0	0	junction_12	337.498672836897	45	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTCCGGGTCCGTTTC	841	False	NA	NA	False	NA	NA	NA	6413958	6427221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424893_6425868
7983	chr10	-	2844	14	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	420	junction_13	51.0210537816898	7	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCAGTGTTGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	116385079	116321072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937
7984	chr14	-	4063	24	NIC	ENSMUSG00000037572.18	novel	4260	25	NA	NA	-5	-6	intron_retention	FALSE	canonical	1	7	junction_3	89.0967486714219	262	18	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATATTTGTCTTGCTA	NA	False	NA	NA	False	NA	NA	NA	47514269	47478406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_47479270_47481259_47481399_47482441_47482570_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
7985	chr17	-	3348	14	FSM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	-2	5	-2	-5	multi-exon	FALSE	canonical	3	678	junction_3	53.1740471465247	1006	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACTGTGGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	29226971	29189858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
7986	chr5	+	3281	4	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	23590	-612	23496	612	3prime_fragment	FALSE	canonical	3	98	junction_2	21.6024689946929	240	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGGACTAGTAATTTTT	NA	False	NA	NA	False	NA	NA	NA	65529246	65541962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65529804_65533022_65533292_65536270_65537415_65540651
7987	chr6	-	2950	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-2	-24	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	279.574416151884	111	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9170	False	NA	NA	False	NA	NA	NA	88495812	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88480852_88480974_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
7989	chr15	-	4934	18	FSM	ENSMUSG00000022246.15	ENSMUST00000169385.3	4759	18	-181	6	-124	-6	multi-exon	FALSE	canonical	3	80	junction_8	29.2639816641101	189	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTATGGATTTGTGGTGT	8716	False	NA	NA	False	NA	NA	NA	10714834	10569060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
7990	chr9	+	2394	23	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	117.632894778137	3	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGCGTCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	108385257	108393131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386715_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
7991	chrX	+	5622	10	NNC	ENSMUSG00000043384.16	novel	5640	10	NA	NA	72	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	62.5104435718989	146	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCAGAAATTGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	134643555	134704212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134643728_134644190_134644277_134645247_134645325_134649404_134649532_134652693_134652767_134698301_134698379_134698536_134698614_134698771_134698899_134699132_134699223_134699496
7992	chr7	-	3477	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	-38	10	-38	-10	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	836	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAACAAATATGACTTTA	9468	False	NA	NA	False	NA	NA	NA	3219067	3204507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
7993	chr1	+	3634	7	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	-4262	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	73.5904583186948	71	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	NA	False	NA	NA	NA	82312507	82423087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82312703_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
7994	chr2	-	3279	2	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	17959	-58	intron_retention	FALSE	non_canonical	2	766	junction_1	0	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCCCAATGTTGGCTAT	NA	False	NA	NA	False	NA	NA	NA	154716743	154713395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157
7997	chr7	-	3306	26	NIC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	26	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	290.026051243677	23	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTACTGGCTGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	44198236	44182177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
8000	chr2	+	2400	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	23	1	23	-1	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	3007	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8592	False	NA	NA	False	NA	NA	NA	72306525	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
8002	chr17	-	1169	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-219	2868	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTAGCCAGGTTCGAGGA	NA	False	NA	NA	False	NA	NA	NA	35821667	35817105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
8003	chr6	+	3804	23	NNC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	0	-71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	99.7559418475125	62	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAAATGAGTGAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	83891376	83958748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83956824_83956892_83958665
8005	chrX	+	2575	15	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	1	21	junction_8	872.304866782391	53	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-15	True	NA	NA	NA	74139709	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140840_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144700_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
8006	chr1	+	4060	5	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	17	4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	98.9709553353912	329	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTGTGTCTTTGTCCAG	NA	False	NA	NA	False	NA	NA	NA	152969242	152995011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_152969358_152969782_152969860_152987887_152987990_152988125_152988194_152991313
8007	chr14	+	4612	13	NIC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	1	-637	intron_retention	FALSE	canonical	3	1632	junction_5	92.9194319468933	18	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATATATACTCTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	45567293	45586525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
8010	chr5	-	3046	9	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	-36	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	320.313689022183	7	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATTTTCTTTGCCAATG	NA	False	NA	NA	False	NA	NA	NA	4154457	4131143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4131193_4131356_4133304_4136459_4136629_4137777_4137874_4141844_4141913_4150154_4150272_4151177_4151355_4152927_4153027_4154133
8011	chr7	-	3030	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	39	0	39	0	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	983	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	99770733	99731317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
8012	chr14	-	4634	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	9	30	9	-30	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	264	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTTGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	52434864	52397900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
8013	chr7	-	3853	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	27	74669	intron_retention	FALSE	non_canonical	0	0	junction_1	139.242793549812	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATGTTCCATGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	42155122	42048140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42048406_42048513_42048565_42123692_42126108_42126528_42126639_42137893_42137975_42138858_42139701_42155033
8014	chr9	+	2861	21	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	173.721753099605	10	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGACTCTTGAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	98445769	98470430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98459108_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
8015	chr9	-	1083	6	ISM	ENSMUSG00000042210.18	ENSMUST00000185334.7	1109	7	1642	-57	-922	1	3prime_fragment	FALSE	canonical	0	0	junction_2	113.784708990268	1	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGACGTTGTGTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	106323000	106317251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969
8016	chr11	-	3523	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	12	5	12	-5	multi-exon	FALSE	canonical	3	437	junction_1	0	554	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATCTTGAGCCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	76108478	76101401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_76104750_76108303
8018	chr1	+	3849	15	NNC	ENSMUSG00000026554.16	novel	2859	14	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	220.500786707838	624	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTGCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	171975732	172023950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015032_172015620_172015714_172016505_172016637_172020084_172020205_172021351_172021469_172022122
8019	chr6	-	5347	25	FSM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	3	10	0	0	multi-exon	FALSE	canonical	3	188	junction_1	23.3505516827524	175	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTGAACTCTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	148732962	148672190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148674308_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
8020	chr2	+	4171	17	NIC	ENSMUSG00000027263.13	novel	4206	18	NA	NA	-13	0	intron_retention	FALSE	canonical	3	61	junction_3	57.8950761615355	253	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	NA	False	NA	NA	NA	121001676	121029251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_121001953_121004038_121004168_121005820_121005944_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
8021	chr11	-	1771	14	Antisense	novelGene_ENSMUSG00000007739.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGGCGCCCCGCTTCG	7746	False	NA	NA	False	NA	NA	NA	22953339	22940794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22940879_22943264_22943319_22944296_22944386_22945927_22946037_22946312_22946456_22947030_22947154_22947601_22947736_22949032_22949175_22950857_22950953_22951359_22951468_22951554_22951694_22952167_22952400_22952814_22952930_22953135
8022	chr2	-	3981	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	29	-815	-3	772	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	272	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGACAGGGCTTAGCTT	NA	False	NA	NA	False	NA	NA	NA	74409263	74349862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
8023	chr11	-	4535	17	NNC	ENSMUSG00000032782.20	novel	3861	19	NA	NA	66	-33	intron_retention	FALSE	canonical	3	15	junction_16	28.5427311237029	102	72	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTCTGAAATAAGTATG	NA	False	NA	NA	False	NA	NA	NA	69214535	69190398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210801_69211643_69211801_69212181_69212760_69213506
8025	chr2	+	4219	20	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_3	119.650321545675	319	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATTTGAAACCTTGTACA	3610	False	NA	NA	False	NA	NA	NA	126549296	126601216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126549408_126559914_126560085_126561944_126562090_126562540_126562650_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
8026	chr14	+	4298	40	NNC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	27	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	205.981944530863	1	96	17	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886799	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932109_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944735_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
8029	chr4	+	2265	11	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	2800	4	NA	NA	-98025	182328	multi-exon	FALSE	non_canonical	0	0	junction_1	58.2412225146416	3	44	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216715	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147316807_147316901_147390101_147390233_147393100_147393194_147409273_147409335_147413438_147413566_147415724_147415863_147416780_147417355_147417591_147418058_147600176
8030	SIRV7	-	2377	6	NNC	SIRV7A	novel	2462	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1670.53363929015	2	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147923	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1349_1435_2676_2993_3112_43028_43078_114680_114989_147608
8032	chr10	+	2656	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	618.176192970544	124	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41395497	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667_41405837_41406008
8033	chr12	+	2955	6	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	5	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	264.780210740909	16	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516895	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561243_86566453
8034	chrUn_JH584304v1	-	2881	7	Intergenic	novelGene_4653	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	111	junction_3	256.761508451369	7	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTACCATAGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	59707	52673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55464_55702_56985_57152_58563_58836_59591
8035	chr11	+	4860	16	Antisense	novelGene_ENSMUSG00002076008.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	216	12	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGCGGGCAAGCTTCCGC	NA	False	NA	NA	False	NA	NA	NA	104224326	104360270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_104226034_104226274_104226524_104227044_104227160_104227374_104227433_104228951_104229076_104233190_104233338_104234316_104234502_104241313_104241481_104247511_104247703_104248306_104248427_104259507_104259607_104269512_104269652_104314746_104316120_104317249_104317295_104358464_104358579_104360243
8036	chr8	+	4684	13	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	3	-4	intron_retention	FALSE	canonical	3	18	junction_8	197.855218531127	10	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCTGGTTGTCATTTTG	NA	False	NA	NA	False	NA	NA	NA	85415903	85426410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85415979_85416336_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423978_85424053_85424189_85424274_85424923_85425021_85425888_85425969_85426100_85426231
8037	chr19	+	3668	11	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-18	73	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	81.5971200472174	481	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACGGATTCTGCATTGA	NA	False	NA	NA	False	NA	NA	NA	10502611	10525090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509621_10509699_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
8038	chr19	+	3073	13	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	-10	0	intron_retention	FALSE	non_canonical	0	0	junction_12	337.498672836897	992	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	824	False	NA	NA	False	NA	NA	NA	6413941	6427226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424869_6425851
8039	chr2	+	3090	7	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-39	-3	intron_retention	FALSE	canonical	3	1115	junction_3	97.1569463405588	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTGTGTTTATTTTTG	8624	False	NA	NA	False	NA	NA	NA	72306557	72317234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72314361_72314942_72315093_72315519
8040	chrX	-	3497	6	NNC	ENSMUSG00000025742.6	novel	3699	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	104.732039032953	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATAGTTCTTGTCATCC	NA	False	NA	NA	False	NA	NA	NA	166165706	166129322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_166131995_166135131_166135306_166146540_166146666_166148114_166148214_166156996_166157183_166165465
8041	chr7	-	4758	17	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-7	-565	combination_of_known_junctions	TRUE	canonical	2	6	junction_4	23.4837044564949	18	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGAACTGTATATACATT	3714	False	NA	NA	False	NA	NA	NA	98305778	98238707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
8042	chrX	-	3441	12	NIC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	19	18	intron_retention	FALSE	canonical	3	815	junction_5	68.2767823514294	14	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGATGAGGGATGTGTAA	NA	False	NA	NA	False	NA	NA	NA	95000549	94978922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
8043	chr12	+	4791	15	NNC	ENSMUSG00000041781.10	novel	5732	15	NA	NA	-220	-915	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	56.6248395051111	8	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAGAAATTAGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	101942026	101971768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_101942148_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967236_101968886_101969022_101969387
8045	chr2	-	6013	11	Antisense	novelGene_ENSMUSG00000038533.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	173	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCCGGGACCTGCACCC	NA	False	NA	NA	False	NA	NA	NA	154381264	154278459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_154278555_154342317_154342464_154346472_154346714_154352426_154352512_154357730_154357918_154359626_154359883_154363070_154363157_154365823_154366019_154370755_154370823_154373138_154373331_154376801
8046	chr6	+	2045	8	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCAGCCGCGAGCTACAG	NA	False	NA	NA	False	NA	NA	NA	144944947	145021779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144946016_144961174_144961318_144964917_144965084_144978510_144978629_144980266_144980378_144985160_144985364_144993018_144993089_145021613
8048	chr1	-	2395	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2044.27758105458	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGCCAGACTTAATACT	NA	False	NA	NA	False	NA	NA	NA	86287119	86278220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280871_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
8049	chr3	-	1556	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	207	26	130	-26	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATAAAATCCTTAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	131065543	131027093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
8050	chr9	+	4687	24	NNC	ENSMUSG00000038535.18	novel	4200	21	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	25.9743220590494	173	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTATATTCAGATT	NA	False	NA	NA	False	NA	NA	NA	72182216	72271043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72182312_72199063_72199209_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72216533_72216689_72219359_72219531_72219932_72220043_72226005_72226124_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
8051	chr7	-	3968	22	NNC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	194	-3	intron_retention	FALSE	canonical	3	20	junction_21	327.009378744476	11	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTGCCTATGGGTTTGA	7436	False	NA	NA	False	NA	NA	NA	126101078	126090882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126092174_126092335_126092543_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101012
8053	chr14	-	6282	12	ISM	ENSMUSG00000114797.2	ENSMUST00000225111.2	2936	14	25	3560	-14	11	5prime_fragment	FALSE	canonical	3	198	junction_5	17.8552490140959	77	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTGTCTTGTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	60488869	60461425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
8054	chr13	-	4043	32	Antisense	novelGene_ENSMUSG00000077360.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	115	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATACTGACAGTGCCAGG	NA	False	NA	NA	False	NA	NA	NA	49887726	49835616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_49835678_49840859_49841000_49841638_49841785_49841996_49842117_49843920_49844004_49844966_49845086_49846497_49846646_49855317_49855405_49855960_49856023_49856642_49856737_49857741_49857868_49858306_49858399_49859260_49859356_49860151_49860272_49861877_49861953_49863051_49863249_49865224_49865310_49868286_49868371_49869157_49869304_49871379_49871501_49873051_49873144_49874554_49874634_49875620_49875740_49876141_49876247_49876466_49876551_49878091_49878267_49878694_49878805_49879628_49879729_49880600_49880787_49882166_49882239_49883488_49883615_49887132
8055	chr12	+	3507	5	Intergenic	novelGene_4302	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	15.4353490404331	174	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTCCTTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	18914151	18925615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_18914267_18920412_18920540_18920741_18920803_18922243_18923331_18923498
8056	chr2	-	3719	12	NIC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	1	2137	intron_retention	FALSE	canonical	3	560	junction_11	67.325286593345	8	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCCAAAGCAAGTGCAATG	NA	False	NA	NA	False	NA	NA	NA	5017563	5001694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5011390_5011877_5012244_5013290_5013624_5015499_5015587_5017515
8058	chr10	+	2864	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	60	2	-16	-2	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	5	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173662	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
8059	chr4	-	3375	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	-18	495	-18	4	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	490	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAATGAAGTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	126954963	126941381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
8060	chr6	-	2910	11	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-26	-23	intron_retention	FALSE	non_canonical	0	0	junction_1	305.477331401202	1	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTCGTCATCTTTGTAA	9146	False	NA	NA	False	NA	NA	NA	88495836	88480583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482192_88483749_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
8062	chr9	-	4139	6	FSM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	24	0	24	0	multi-exon	FALSE	canonical	3	171	junction_5	13.1969693490589	295	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGCCTTACCATCTCC	5775	False	NA	NA	False	NA	NA	NA	108455914	108449509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299_108453782_108455692
8063	chr18	+	2960	16	ISM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	5722	6680	-5521	1005	intron_retention	FALSE	canonical	3	667	junction_3	80.2328278615846	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACTGGAGTCCTGATAAC	NA	False	NA	NA	False	NA	NA	NA	24742739	24765884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415
8064	chrM	+	2055	2	Genic_Genomic	ENSMUSG00000064367.1	novel	1824	1	NA	NA	129	572	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACCTAATGACAAACATAC	125	False	NA	64	True	NA	NA	NA	11870	14137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13455_13666
8065	chr5	+	3305	21	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	2	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	118.94262272205	3	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGCATCATTCCTATACT	NA	False	NA	NA	False	NA	NA	NA	45827262	45857459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837347_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
8066	chr9	+	2535	23	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_3	155.945688786961	1	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGCGTCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	108385258	108393131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386267_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390922_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
8067	chr11	+	3328	20	NNC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	105.41207886761	8	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCACGTCACCTCATGT	NA	False	NA	NA	False	NA	NA	NA	119158853	119176281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175414_119175983
8068	chr15	-	2683	9	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-114	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	850.572298146959	23	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCCCCATTTGTTAGCCT	NA	False	NA	NA	False	NA	NA	NA	81283909	81247861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249753_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
8069	chrUn_JH584304v1	-	2705	4	Intergenic	novelGene_4666	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_3	394.864533732773	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	59731	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55249_55464_55702_59591
8070	chr11	-	3216	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9012	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_14	378.799506766483	21	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	412	False	NA	NA	False	NA	NA	NA	106615232	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
8071	chr13	+	4208	11	NNC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	174.640917313212	2	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	False	NA	NA	False	NA	NA	NA	54769644	54811876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803284_54803391_54804094_54804239_54808766
8072	chr17	+	2289	14	NIC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	38	0	intron_retention	FALSE	canonical	3	1213	junction_1	79.2643692757748	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165786	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
8073	chr5	+	4595	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	11	-2637	8	-8	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	66	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTAAGCAATGAAGTTT	NA	False	NA	NA	False	NA	NA	NA	74696152	74759443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
8075	chr8	+	4677	4	FSM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	-11	-2302	-11	2302	multi-exon	FALSE	canonical	3	165	junction_1	17.1075032271418	715	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACACACCAGCTCATACAT	NA	False	NA	NA	False	NA	NA	NA	4663155	4682533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167
8076	chr4	+	2368	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-12	2581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	128.891582347336	3	67	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576861	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578938_147591973_147592098_147595209_147595337_147596801_147598232_147600089
8077	chrX	-	3479	11	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	141.867156170835	2170	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTCCATTATGCCTG	NA	False	NA	NA	False	NA	NA	NA	156275042	156226847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243411_156244169_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
8078	chr2	+	2971	8	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	28	-7	intron_retention	FALSE	canonical	3	1115	junction_3	92.3100366002682	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAACTTGTGTGTTTATT	8597	False	NA	NA	False	NA	NA	NA	72306530	72317230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72315093_72315519_72315657_72316063
8079	chr8	-	3463	18	NNC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.574314614039	7	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTCAGTATCATATAAGA	NA	False	NA	NA	False	NA	NA	NA	73228979	73214485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215146_73215305_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
8080	chr5	+	2106	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-30	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	743.40236506813	6	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGTTTGTTCACTGTGA	NA	False	NA	NA	False	NA	NA	NA	45650815	45670014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663563_45664448_45664552_45666779_45666860_45668449_45668560_45669222
8081	chr6	+	3207	19	NNC	ENSMUSG00000004535.13	novel	3285	18	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	153.043405446355	7	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	NA	False	NA	NA	False	NA	NA	NA	52690724	52743765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716606_52716672_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
8083	chr18	+	2308	21	ISM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	0	4543	0	3142	5prime_fragment	FALSE	canonical	3	667	junction_5	80.0020468488151	53	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAATCAATGACTGGAC	NA	False	NA	NA	False	NA	NA	NA	24737017	24768021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957
8084	chr12	-	5337	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	5	21	2	-21	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	578	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAATGATTTTCTATTA	NA	False	NA	NA	False	NA	NA	NA	101924500	101885180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
8085	chr5	-	2957	15	NNC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	-28	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	217.427492019097	1395	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCCCAAGTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	52347884	52307555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52341883_52341952_52342246_52347621
8086	chr17	+	3341	12	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCGACCCGCCAGCAGAT	912	False	NA	NA	False	NA	NA	NA	32522645	32540083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32524680_32525462_32525560_32528392_32528523_32529550_32529645_32529925_32530068_32531258_32531350_32533086_32533118_32534415_32534463_32534628_32534759_32535160_32535642_32537744_32537786_32540060
8087	chr5	-	2593	13	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTCCGCTACGCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	33829537	33815928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816069_33818562_33818728_33818861_33818990_33821164_33821256_33821494_33822198_33824034_33824086_33824401_33824509_33825303_33825396_33825475_33825579_33826004_33826205_33826820_33826990_33828745_33828861_33829008
8089	chr18	+	5451	3	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15005	-92	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	87	2	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTCTATTGGAATTTG	NA	False	NA	NA	False	NA	NA	NA	82990927	83023347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_82990974_83004868_83006324_83019397
8090	chr11	+	3192	13	Antisense	novelGene_ENSMUSG00000078622.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	134	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCGCCTGCGCGCGGG	4823	False	NA	NA	False	NA	NA	NA	106090187	106107176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106091845_106092837_106093004_106093208_106093320_106093553_106093612_106094362_106094450_106095746_106095861_106096188_106096288_106098831_106098898_106099020_106099142_106101112_106101287_106102496_106102606_106103905_106104190_106107030
8091	chr11	-	2906	3	NNC	ENSMUSG00000035455.13	novel	2974	3	NA	NA	-2	-88	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	315	1565	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758927	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11753064_11756095_11756216_11758829
8093	chr19	+	3244	12	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	-15	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	228.152370428693	2	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACCAAAAGAATGTTGTT	NA	False	NA	NA	False	NA	NA	NA	10160387	10174228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171926_10172251
8094	chr2	+	4061	32	NNC	ENSMUSG00000038685.19	novel	4307	33	NA	NA	-15	11	intron_retention	FALSE	canonical	0	0	junction_20	100.742632701873	2	72	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGCAACTTCCTCCTAGA	NA	False	NA	NA	False	NA	NA	NA	180961516	180997821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980027_180980148_180980848_180980888_180980975_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180992001_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997209_180997346_180997443_180997606_180997716
8095	chr18	-	4424	12	FSM	ENSMUSG00000024293.17	ENSMUST00000127099.9	4572	12	243	-95	0	0	multi-exon	FALSE	canonical	1	1	junction_5	52.6252932305684	221	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCACTAGCTTGCAATT	245	False	10610134	NA	False	NA	NA	NA	10610109	10566506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10577637_10577760_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
8096	chrX	-	3933	15	NIC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	107	0	intron_retention	FALSE	canonical	3	1039	junction_8	72.9261927693797	149	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	47602196	47563820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47564066_47564439_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
8097	chr1	+	3629	7	NNC	ENSMUSG00000038806.8	novel	3213	7	NA	NA	9	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	176.591493440527	26	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAGCAATTGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	180678700	180695667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688929_180689631_180690407_180693636
8098	chr19	+	3307	20	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-21258	-631	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	85	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCACAAGAAGGCGCGAGA	NA	False	NA	NA	False	NA	NA	NA	5323965	5345425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5324558_5324821_5325004_5325089_5325192_5329296_5329401_5329499_5329641_5329869_5329981_5333675_5333781_5333887_5333975_5334601_5334755_5336218_5336685_5336837_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338444_5341345_5341450_5343106_5343348_5344326_5344405_5345068_5345114_5345285
8100	chr17	+	4051	16	NNC	ENSMUSG00000062691.11	novel	602	5	NA	NA	2312	16741	intron_retention	TRUE	non_canonical	0	0	junction_1	0	7	93	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCAGCCCGGAGCTTACT	NA	False	NA	NA	False	NA	NA	NA	79226440	79244476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79227445_79227975_79228060_79228150_79228209_79229062_79229153_79229560_79229750_79229946_79230001_79230664_79230759_79231865_79231945_79233345_79233412_79233511_79233622_79234303_79234354_79236707_79236793_79238735_79238925_79239537_79239773_79242005_79243499_79244305
8101	chr14	+	2918	7	NIC	ENSMUSG00000040618.8	novel	2631	8	NA	NA	1	-4	intron_retention	FALSE	canonical	3	1534	junction_4	95.2505468050796	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCACAGGACTCCCCA	9016	False	NA	NA	False	NA	NA	NA	55777847	55786325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55782883_55785153_55785292_55785496_55785593_55785761
8102	chr5	-	2304	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-43	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	573.544991385033	2	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGTAGAGTTTT	2277	False	NA	NA	False	NA	NA	NA	138170123	138162851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167143_138167382_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
8103	chr5	-	4154	12	NNC	ENSMUSG00000029405.17	novel	2716	12	NA	NA	86	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	651.227423428094	1	154	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCATTTATCTATGTCCC	NA	False	NA	NA	False	NA	NA	NA	92231286	92200024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205853_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
8104	chr8	-	4809	5	FSM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	72	2	2	-2	multi-exon	TRUE	canonical	3	150	junction_1	24.3554408705735	446	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGCATCCAGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	71112316	71099086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
8106	chr2	-	2935	19	NIC	ENSMUSG00000027620.17	novel	2127	18	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	3	117	junction_15	935.369445727195	1212	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACAAGAAAATTTTCGTT	NA	False	NA	NA	False	NA	NA	NA	156022150	155989170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156019306_156020799_156020873_156021096_156021161_156021806
8107	chr19	+	1812	13	ISM	ENSMUSG00000025207.17	ENSMUST00000179305.2	4290	14	208	4197	208	1908	5prime_fragment	FALSE	canonical	1	6	junction_6	3.05050086962052	3	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAGAGAGGAAATCGAGG	NA	False	NA	NA	False	NA	NA	NA	44980782	44987636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_44981078_44981172_44981322_44981558_44981622_44984907_44985007_44985118_44985213_44985358_44985473_44985730_44985895_44985967_44986138_44986402_44986548_44986670_44986894_44987109_44987226_44987316_44987478_44987617
8111	chr8	-	1321	2	FSM	ENSMUSG00000037070.11	ENSMUST00000211719.2	1622	2	-7	308	-7	-308	multi-exon	FALSE	canonical	3	608	junction_1	0	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCGATCTGATAGAGGGGG	NA	False	NA	NA	False	NA	NA	NA	79235515	79232213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_79233447_79235427
8114	chr7	-	3384	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	60	5	-38	-5	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATATGACTTTATTTTT	9566	False	NA	NA	False	NA	NA	NA	3218969	3204502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
8115	chr11	-	4956	9	Antisense	novelGene_ENSMUSG00000018411.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	103	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATAGGAAGCAGCGAGTG	NA	False	NA	NA	False	NA	NA	NA	104222911	104178176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_104178208_104185681_104185748_104193183_104193235_104196136_104196234_104197449_104197591_104201099_104201359_104212174_104212255_104213249_104213365_104218795
8116	chr8	+	2996	19	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-1505	-2095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1048.4749492171	1	102	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111766852	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779854_111779937_111780520_111780641_111780756_111780833_111781140_111781255_111781650
8117	chr8	-	3233	9	NNC	ENSMUSG00000031951.9	novel	2920	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	125.899699662072	26	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	112660431	112638642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112653477_112653558_112654180_112654432_112659991_112660162_112660259
8119	chr2	+	2771	8	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1993	junction_1	222.057723696027	67	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTATTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	130116363	130121230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118779_130118951_130119891_130120075_130120211_130120816
8120	chr14	-	2791	10	NNC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	1542.08452795494	5	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCTGTTAGAAGCTGG	8751	False	NA	NA	False	NA	NA	NA	52341459	52311006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52335837_52336002_52341345
8121	chr1	+	3850	28	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	316.290810083394	1	95	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGCTTGCCGTTTCCCTG	3046	False	NA	NA	False	NA	NA	NA	171910377	171949895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933687_171933760_171935887_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942392_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
8122	chr4	+	2435	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	6	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	43.2730863239497	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147637739	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665698_147665826_147667290_147668157_147668492
8123	chr17	-	6422	36	FSM	ENSMUSG00000039414.11	ENSMUST00000097281.4	6388	36	-42	8	-2	-1	multi-exon	TRUE	canonical	3	55	junction_23	13.6878912673552	140	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACAGAGCATTCATACAG	NA	False	NA	NA	False	NA	NA	NA	79142795	79060334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_79060766_79062639_79062854_79064291_79064444_79067844_79068070_79069428_79069696_79070361_79070507_79072756_79072885_79074308_79074564_79075794_79076033_79080966_79081147_79095633_79095703_79098863_79099046_79102523_79102776_79103250_79103491_79103812_79103958_79109041_79109212_79110800_79110991_79113375_79113536_79115758_79115950_79117936_79118043_79120523_79120700_79121500_79121665_79122918_79123029_79123660_79123761_79124901_79125055_79126234_79126347_79128049_79128301_79128843_79129000_79131924_79132175_79133660_79133819_79135360_79135533_79136921_79137072_79137987_79138097_79138802_79139015_79141524_79141673_79142734
8124	chrX	-	3105	8	NNC	ENSMUSG00000025742.6	novel	3699	7	NA	NA	0	-652	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	95.2871064366068	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGGCATGACAAAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	166165706	166129969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_166131995_166133510_166133671_166135131_166135306_166141860_166141958_166146540_166146666_166148114_166148214_166156998_166157183_166165465
8125	chr8	-	3477	18	NNC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	180.133687378901	3	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGACACTTGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	73228983	73214472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215200_73215279_73215438_73215602_73215688_73215823_73215947_73216020_73216113_73216240_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
8128	chr5	-	1911	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	23248	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135940156	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938439_135939305_135939980_135940095
8129	chr5	+	2739	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	418.512138414168	1406	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478619	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486179_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
8131	chr3	+	2809	20	NIC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-2	241	combination_of_known_junctions	FALSE	canonical	1	74	junction_19	373.246081183867	1513	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAGTATACTTCCATTG	NA	False	NA	NA	False	NA	NA	NA	151916116	151938667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151937891
8132	chr13	+	3133	29	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	17	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	113.14488634544	848	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18901476	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975799_18978517_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
8134	chr5	-	2164	15	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10685	-7992	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	35	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCACCCGGCCCGCCCCCG	3868	False	NA	NA	False	NA	NA	NA	129875198	129864436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864521_129864593_129864640_129865297_129865360_129866114_129866247_129866866_129867053_129867645_129867748_129868500_129868644_129868845_129869005_129869083_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
8135	chr4	-	1705	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	729.869946558213	87	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093136_41093195_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
8136	chr17	-	3117	12	NIC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	2	38	junction_10	218.737436475109	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACTGTGGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	29226915	29189858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29218982_29219116_29226684
8137	chr16	+	849	1	Intergenic	novelGene_3659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTTCAAACAACTCACAGA	NA	False	NA	NA	False	NA	NA	NA	48141262	48142111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_48141300_48142100
8139	chr5	-	4118	7	Genic_Genomic	ENSMUSG00000105044.2	novel	645	1	NA	NA	-32236	1492	multi-exon	FALSE	canonical	0	0	junction_3	95.3583883159852	49	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTAGAGTGTGCTCAACAA	NA	False	NA	NA	False	NA	NA	NA	110014247	109979874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_109983468_109984614_109984676_109984863_109984991_109993337_109993421_109994552_109994621_109995558_109995686_110014188
8140	chr10	+	2883	12	NIC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	4	-15	intron_retention	FALSE	canonical	3	638	junction_7	278.033382858014	2	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCTGTGTCTTACACT	1628	False	NA	NA	False	NA	NA	NA	79690505	79700251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698704_79698811_79698890_79698978
8141	chr11	-	3259	14	NNC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_13	144.04798674472	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	100288545	100261444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288377
8142	chr11	-	2642	10	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	5	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	142.650916403006	668	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCCGATATTTCTTTCA	974	False	NA	NA	False	NA	NA	NA	79145498	79130208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
8144	chr1	+	3800	23	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-3	-2	intron_retention	FALSE	non_canonical	0	0	junction_14	460.335686445094	1	133	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTACTCTCGTGTTGTGTGC	3139	False	NA	NA	False	NA	NA	NA	180396485	180428815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418850_180420427_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
8148	chr4	-	1981	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	43	84	22	-84	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	387	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAACCAATGCTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	137084988	137047090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
8150	chr3	+	3109	11	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	0	-387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	295.442109388625	971	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTGGGGGCTCTATCT	NA	False	NA	NA	False	NA	NA	NA	105866823	105876689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478_105875217_105875263
8151	chr4	-	3673	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	-9	0	-9	0	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	349	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	-26	True	NA	NA	False	NA	NA	NA	56865197	56810934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
8152	chr11	-	2323	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	38	1198	0	-5	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTGAATTAAGTGAAATTG	9654	False	NA	NA	False	NA	NA	NA	106679320	106672378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
8153	chr13	+	3032	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-5	2777	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.499606986225	21	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGACCAATTTCGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	62277724	62324010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62319411_62321174_62321980_62322536
8154	chr2	+	5245	18	FSM	ENSMUSG00000040506.17	ENSMUST00000045705.14	5203	18	-42	0	1	0	multi-exon	FALSE	canonical	3	82	junction_5	14.4832560525026	144	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGCTCCTGCTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	91560527	91749194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
8155	chr9	+	4313	26	NNC	ENSMUSG00000032115.15	novel	4489	26	NA	NA	-4	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	258.720853430874	1	121	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTTTCTATAGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	44290915	44303646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291039_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293807_44295466_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300227_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
8157	chr15	+	2385	15	Antisense	novelGene_ENSMUSG00000022283.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	243	6	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGACCTTTCCCGTGAGAG	NA	False	NA	NA	False	NA	NA	NA	36595905	36608780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36596346_36596807_36596898_36597205_36597337_36597698_36597786_36598216_36598372_36598445_36598557_36599195_36599291_36599451_36599718_36600832_36600932_36601112_36601251_36601557_36601653_36603088_36603233_36605686_36605799_36605982_36606182_36608557
8158	chr15	-	3256	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	-76	7	-71	-7	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	145	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAAGCTGTGTCAGCCCC	6923	False	NA	NA	False	NA	NA	NA	98560846	98543021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
8159	chrX	+	2390	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-53	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1106.63695944063	1	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473287	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473332_100480757_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
8160	chrX	-	2914	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.794742517923	5	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231369	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086443_23086813_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
8161	chr5	+	2005	15	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	458	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1163.14735760788	2	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864519	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588_129874824_129874934
8162	chr5	+	2637	17	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	412.617137724247	6	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815941	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33817243_33817383_33817496_33817691_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
8163	chr10	+	2589	12	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_9	507.108526699404	1	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1585	False	NA	NA	False	NA	NA	NA	79690462	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698632_79698704_79698811_79698890_79698978
8164	chr12	+	3898	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	-1	-2553	-1	-7	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	2	124	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCTGAGTCGTTCATG	NA	False	NA	NA	False	NA	NA	NA	86516889	86568392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
8165	chr1	+	2743	3	NIC	ENSMUSG00000053332.14	novel	2556	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	4541	junction_2	318	24	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160865118_160865564_160865843_160866026
8166	chr3	+	4679	5	NIC	ENSMUSG00000028156.13	novel	856	8	NA	NA	4	233	intron_retention	FALSE	canonical	3	1289	junction_1	339.389525471839	48	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCTTTTAGACAACTAGA	NA	False	NA	NA	False	NA	NA	NA	138233049	138262208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_138233076_138252081_138252189_138253419_138256768_138259342_138259483_138261150
8167	chr3	+	2816	16	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_6	282.785871091342	83	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATTGGTATAGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	157742336	157772722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157755737_157755852_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
8169	chr1	-	3521	6	NIC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-364	2	intron_retention	FALSE	canonical	3	189	junction_5	94.4381278933461	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACACTTATGCTACTC	NA	False	NA	NA	False	NA	NA	NA	13197751	13183678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13196081_13197333
8171	chr11	-	3314	4	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	-1	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	555.948039138751	1	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCACTTTCTCCCCCCTCT	NA	False	NA	NA	False	NA	NA	NA	96714840	96708243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712141_96713064_96713146_96714770
8172	chr15	-	2875	10	NIC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	12	-84	intron_retention	FALSE	canonical	3	5476	junction_6	306.66521738788	35	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601938	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31595990_31597556_31597722_31598145_31598207_31601746
8173	chr6	-	3251	20	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	582	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	269.838075996731	2	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGTACGGGGGCTGA	9027	False	NA	NA	False	NA	NA	NA	124805276	124792001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797557_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124804977
8174	chr16	-	2816	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	299.843442482906	80	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCTCCTCATTTACTT	6266	False	NA	NA	False	NA	NA	NA	38370584	38345497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38354993_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
8175	chr6	-	3217	17	NIC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	34	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_16	78.1394736592844	600	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGATAATCATTTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	71586089	71565955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
8176	chr16	+	3134	4	NIC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-15	-1539	intron_retention	FALSE	canonical	3	369	junction_3	71.9305220334178	39	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTCATGCAGGCTAAAGG	NA	False	NA	NA	False	NA	NA	NA	48104134	48113061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48104205_48108240_48109569_48109690_48109742_48111376
8177	chr8	+	3074	16	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	261.526000407013	6	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392967_107396380
8178	chr12	+	2434	6	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-54	intron_retention	FALSE	canonical	2	50	junction_3	2545.68296533563	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24759441_24761445_24761802_24762659_24762765_24762859
8181	chr2	+	3052	19	NIC	ENSMUSG00000026775.10	novel	563	4	NA	NA	-12	-1492	combination_of_known_junctions	FALSE	canonical	1	13	junction_1	186.556581295572	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCCTTTCAAAAATGATC	7525	False	NA	NA	False	NA	NA	NA	23046832	23087780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_23047033_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
8182	chr12	+	2700	15	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	91.5556037139648	1584	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157631	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168877_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
8186	chr1	-	5098	19	NNC	ENSMUSG00000026274.12	novel	5779	18	NA	NA	36	59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.7816665234024	156	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGCCTTATGAGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	93270475	93236432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93236500_93237211_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496_93249945_93251923_93252078_93253085_93253255_93254937_93255199_93258476_93258612_93259280_93259422_93262264_93262436_93263331_93263568_93265066_93265303_93270247
8187	chr11	-	2849	9	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	75	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1408.24455772959	1	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9756	False	NA	NA	False	NA	NA	NA	106679218	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676075_106677815_106677901_106679098
8188	chr13	-	3241	7	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18292	3079	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	32.6938662273046	22	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74739861	74724397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74725525_74725953_74727579_74728971_74729033_74729232_74729360_74731765_74731993_74739390_74739447_74739843
8189	chr6	-	5085	8	NNC	ENSMUSG00000030203.18	novel	5104	7	NA	NA	-14609	-1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	32.541966625217	148	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTAAGTGTGAGACGTGGC	8523	False	NA	NA	False	NA	NA	NA	134784197	134692436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_134696015_134697456_134697581_134702798_134702959_134716774_134716939_134735581_134735721_134737808_134738398_134783784_134783870_134783951
8190	chr18	+	2748	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	25	1055	0	-63	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGACAGATAACCTAATAA	13	True	NA	NA	False	NA	NA	NA	3383256	3435322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
8191	chr1	-	3628	20	NNC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	9	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	43.8219768035346	256	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCATTTTGCTTTTCCG	NA	False	NA	NA	False	NA	NA	NA	151304197	151243455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267281_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
8192	chr13	+	2109	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	564.769198818317	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588135	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588212_3588282_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
8193	chr19	-	3592	19	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	0	0	intron_retention	FALSE	canonical	3	690	junction_18	182.476651643605	24	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5059	False	NA	NA	False	NA	NA	NA	53027072	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
8194	chr13	-	3250	8	NNC	ENSMUSG00000021556.13	novel	3954	10	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	177.324100828663	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAAGTTTTAGGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	59823599	59782815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59785216_59786118_59786227_59787933_59788156_59797403_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
8195	chr12	-	3640	20	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	0	-410	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	200.628817565357	3	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTCTTAGTTATTTTAA	2678	False	NA	NA	False	NA	NA	NA	59058803	59005578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043954_59044067_59045070_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
8196	chr15	-	3009	12	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-110	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	742.904718983265	5	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283905	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253645_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
8198	chr8	-	2645	6	NIC	ENSMUSG00000031832.16	novel	3236	15	NA	NA	165	-1	intron_retention	FALSE	canonical	3	42	junction_1	5.88557558782486	3	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGGTGTGTAAAGCCCA	4873	False	NA	NA	False	NA	NA	NA	120328152	120324714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327968_120328054
8199	chr13	+	2188	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	112	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	737.613014173209	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588259	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3588672_3588805_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
8200	chr5	+	3277	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	20	-153	-6	153	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	2078	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATATGGAGGTGCTTAAT	NA	False	NA	NA	False	NA	NA	NA	31652104	31670401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
8201	chr4	-	2178	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	226	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	106.693205031998	1	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	9749	False	NA	NA	False	NA	NA	NA	147894019	147838439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147839610_147840029_147840693_147842158_147842286_147845677_147845736_147891546_147891641_147893953
8202	chr1	+	2825	4	NIC	ENSMUSG00000053332.14	novel	1614	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	4541	junction_3	682.973401141411	16	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863375_160863552_160865608_160865794_160865843_160866026
8203	chr8	+	3643	15	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	-2	intron_retention	FALSE	canonical	3	179	junction_1	106.215822834492	22	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85415917	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
8204	chrX	+	3096	27	NNC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	-1	-95	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	370.994818461719	1	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCAGCCACAGCAGCCGC	NA	False	NA	NA	False	NA	NA	NA	143101012	143152672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122723_143122768_143123023_143123141_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
8205	chr6	-	3818	29	Genic_Genomic	ENSMUSG00000107577.2	novel	3662	1	NA	NA	1708	52347	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTGGCTACTACACTGCC	NA	False	NA	NA	False	NA	NA	NA	116239348	116185047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_116185088_116185166_116185291_116185914_116186080_116190908_116190970_116193004_116193178_116194707_116194803_116195619_116195682_116196911_116196959_116197494_116197606_116198776_116198857_116200154_116200213_116201380_116201495_116201933_116201993_116203382_116203446_116204304_116204495_116206182_116206310_116208499_116208588_116213055_116213158_116215090_116215223_116218405_116218582_116221548_116221653_116223067_116223227_116224940_116225118_116231048_116231179_116232008_116232130_116233575_116233788_116235600_116236215_116237448_116237628_116239293
8206	chr5	+	4678	33	NNC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	-1	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	40.085017073091	5	72	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCATAGGTATGACTTGA	NA	False	NA	NA	False	NA	NA	NA	138278816	138310647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138278883_138280126_138280305_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298470_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307631_138309995_138310068_138310297
8207	chr1	+	2484	10	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	336.721154373272	811	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGATTGCTTTATATAGT	NA	False	NA	NA	False	NA	NA	NA	4878115	4916956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4907824_4907878_4909609_4909712_4911178_4911356_4915185
8208	chr10	-	3734	21	NNC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	50.5147503210696	385	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	78020971	78006742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014309_78014818_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
8209	chr3	-	3987	1	Antisense	novelGene_ENSMUSG00000041220.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCACCTGCTTCCTGCAGT	NA	False	NA	NA	False	NA	NA	NA	129431478	129427491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_129427500_129431500
8210	chr1	-	6235	16	FSM	ENSMUSG00000026028.13	ENSMUST00000027186.12	6189	16	-65	19	-65	-19	multi-exon	FALSE	canonical	3	42	junction_7	7.62335592475883	121	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCTTCTTAAATTGTCC	1482	False	NA	NA	False	NA	NA	NA	59012654	58939626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58943342_58945864_58945971_58947681_58947949_58949108_58949408_58950794_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
8211	chr7	+	2904	1	NIC	ENSMUSG00000025487.16	novel	1989	13	NA	NA	-1938	646	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	74	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGCTGGACTTCTCGGAG	NA	False	NA	NA	False	NA	NA	NA	140467374	140470278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140467400_140470300
8214	chr2	+	4557	14	FSM	ENSMUSG00000005506.17	ENSMUST00000111451.10	4678	14	121	0	-19	0	multi-exon	FALSE	canonical	3	395	junction_7	113.564516501784	480	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2438	False	NA	NA	False	NA	NA	NA	90770862	90849835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
8216	chrX	-	2506	14	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	425.827617426716	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	NA	False	NA	NA	NA	93585629	93579079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93583608_93583802_93584154_93584856_93584931_93585497
8217	chr14	+	3469	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	110.347842751909	41	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTATTGGTTTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	56640136	56726891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719593_56720524_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
8218	chr1	+	2365	11	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	575.732064418858	461	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTTTTGTCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	4928034	4968132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578_4967743_4967930
8219	chr11	+	3494	20	FSM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	135	4	-4	-4	multi-exon	FALSE	canonical	3	393	junction_7	40.3001893687597	593	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTTCTCACGTCACCT	NA	False	NA	NA	False	NA	NA	NA	119158847	119176276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
8220	chr12	-	2807	22	NIC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	3088	-2334	intron_retention	FALSE	canonical	2	5	junction_21	465.298416911175	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13296076	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13296026
8221	chr18	+	2655	20	NIC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	3769	-375	intron_retention	FALSE	canonical	3	630	junction_6	65.3003713936998	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAAGCTATGTGCCAA	NA	False	NA	NA	False	NA	NA	NA	32974143	32999078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
8223	chr13	-	3390	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	71	242	intron_retention	FALSE	non_canonical	0	0	junction_1	248	20	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGAATTTTCACAGTT	NA	False	NA	NA	False	NA	NA	NA	34314266	34310488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312227_34312274_34312515_34312854
8224	chr5	-	3878	4	Genic_Genomic	ENSMUSG00000105044.2	novel	645	1	NA	NA	-10880	1497	multi-exon	FALSE	canonical	3	110	junction_1	60.4997704311531	135	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGTGCTCAACAATTAAT	NA	False	NA	NA	False	NA	NA	NA	109992891	109979869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_109983468_109984614_109984676_109984863_109984991_109992799
8225	chr2	+	3419	12	NNC	ENSMUSG00000027397.15	novel	3316	11	NA	NA	-45	-1	intron_retention	FALSE	canonical	2	9	junction_6	191.197833591932	795	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTGCTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	129040638	129053535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129046165_129046225_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
8226	chr8	-	2978	17	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-48	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	359.370260838317	3	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAATTTTGGATTATCT	NA	False	NA	NA	False	NA	NA	NA	86026146	85987027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000159_86001554_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
8227	chr16	+	3331	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	9	-185	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	252.926604539638	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATGCCAGGCTTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	13598585	13632518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13632116_13632172
8228	chr3	+	3028	19	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	5089.11843368758	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCACAGTTGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	102927926	102964445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102960062_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
8229	chr2	-	4183	5	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5575	2341	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	17.8465682975747	11	65	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTGTAAAAGGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	177021675	177003971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177007703_177008856_177008918_177009124_177009252_177017944_177018063_177021529
8230	chr6	-	2194	9	ISM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	9176	5318	1119	5	3prime_fragment	FALSE	canonical	3	3523	junction_3	285.287546827758	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	NA	False	NA	NA	NA	144985362	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160
8231	chr4	-	3965	8	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	0	-10	intron_retention	FALSE	canonical	3	14	junction_5	183.495759835346	1	55	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATACGTGAGACAAACTTG	NA	False	NA	NA	False	NA	NA	NA	126954945	126941444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126951193_126951387_126952585_126953453_126954788
8232	chr5	-	5020	32	Antisense	novelGene_ENSMUSG00000036928.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	64	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCCTTAGAAAAAAACGCG	NA	False	NA	NA	False	NA	NA	NA	138310610	138278791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_138278915_138280124_138280300_138280879_138280978_138281294_138281413_138287455_138287555_138288452_138289742_138294093_138294163_138294958_138295086_138295586_138295686_138295882_138295965_138296227_138296336_138296540_138296654_138296776_138296885_138297069_138297172_138297390_138297484_138297595_138297688_138297912_138298114_138298213_138298287_138298385_138298472_138299041_138299120_138299201_138299295_138299416_138299587_138299694_138299831_138300783_138300886_138302299_138302450_138302631_138302765_138302846_138302997_138306724_138306916_138307086_138307189_138307458_138307536_138309997_138310066_138310295
8233	chr4	+	5456	11	FSM	ENSMUSG00000028890.14	ENSMUST00000030723.3	7631	11	23	2152	-10	-1731	multi-exon	FALSE	canonical	3	78	junction_5	11.1103555298649	234	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAAAAGAGCACTTACTT	342	False	NA	NA	False	NA	NA	NA	124696364	124741441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124696437_124698452_124698909_124713997_124714237_124715020_124715153_124718079_124718154_124718838_124718976_124724911_124724990_124731490_124731594_124732111_124732711_124736320_124736385_124737939
8234	chr3	-	4339	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	640	1	4	-1	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	452	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCCTTTTATTGCTTCCA	NA	False	NA	NA	False	NA	NA	NA	35986981	35946254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
8235	chr6	-	2561	7	NNC	ENSMUSG00000039985.15	novel	2785	7	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	75	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847937	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823932_148824017_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
8236	chr1	-	1983	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2126.90124961641	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287096	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278380_86279945_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
8238	chr2	+	5223	11	FSM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	9	0	9	0	multi-exon	FALSE	canonical	3	214	junction_9	12.953763931769	210	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCCCCTTTCTTCACA	NA	False	NA	NA	False	NA	NA	NA	163916066	163997444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888_163960047_163993592
8239	chr6	-	2954	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	-59	-91	-59	91	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	34	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTACGATAAAAGCTTAGTG	NA	False	NA	NA	False	NA	NA	NA	72416600	72409690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
8240	chr9	-	3113	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	-8	-159	at_least_one_novel_splicesite	FALSE	non_canonical	3	20	junction_10	54.9276696109428	78	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGACTTTCCAGGTGTTT	6396	False	NA	NA	False	NA	NA	NA	44272949	44259383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
8241	chr13	+	4177	34	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	11	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	566.481535145002	1	110	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGTTGGAAGTAGTTA	NA	False	NA	NA	False	NA	NA	NA	49835677	49887738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865317_49868293_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878707_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885854_49887255
8242	chr2	+	2905	18	NIC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-5	-1559	combination_of_known_splicesites	FALSE	canonical	3	33	junction_3	187.259104767536	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACATTATATTCTGAATAT	7217	False	NA	NA	False	NA	NA	NA	23046524	23087713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_23046744_23050203_23050336_23052512_23052676_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
8243	chr7	-	2726	19	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	1639	456	1432	-456	3prime_fragment	FALSE	canonical	3	1924	junction_14	267.872251660893	1	51	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126163944	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874
8245	chr9	+	3266	17	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	1	0	intron_retention	FALSE	canonical	3	468	junction_2	44.9275458377152	3	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385270	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108390396_108390484_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392432_108392994
8246	chr10	-	2696	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	59	-68	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	880.689577256305	1	69	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTATTTAACTGACTATT	NA	False	NA	NA	False	NA	NA	NA	86541314	86526771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539464_86540157_86540261_86541170
8248	chr18	+	4862	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	175	-3631	175	3493	multi-exon	FALSE	canonical	3	78	junction_1	19.3349424617711	183	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACTGTGTCTATTTGG	1394	False	NA	NA	False	NA	NA	NA	21094703	21120412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
8250	chr19	-	2677	22	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	2	17	junction_20	424.006021862855	2623	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5084	False	NA	NA	False	NA	NA	NA	53027047	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53021055_53021253_53026944
8251	chrX	-	6763	8	NNC	ENSMUSG00000079509.11	novel	6762	8	NA	NA	575	-3	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_7	38.1308167192032	94	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACCCTAGTGGAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	93165931	93118240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93165758
8252	chr15	-	3734	11	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	0	55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	152.519638079822	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTATATTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	38519510	38488426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490628_38492564_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
8253	chr11	+	4158	24	NNC	ENSMUSG00000020898.19	novel	3978	23	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_17	126.910697507251	349	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5287	False	NA	NA	False	NA	NA	NA	68906937	68927296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924490_68924686_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
8255	chrY	-	3841	3	Intergenic	novelGene_4700	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTACTTGCCTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	2784257	2777043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_-_2777168_2779821_2781581_2782299
8256	chr17	+	3342	17	NIC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	20	-1	combination_of_known_splicesites	FALSE	canonical	3	7	junction_11	388.210296585498	1	62	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGTGTCTCGTGGTGTAT	NA	False	NA	NA	False	NA	NA	NA	71923229	71966025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
8257	chr12	-	3896	21	FSM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	16	2388	-1	212	multi-exon	FALSE	canonical	3	285	junction_17	38.6834589973544	7	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGTTTGGAAAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	91815915	91775204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
8258	chr13	+	2792	6	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	50	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	88.661152710756	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAATATTGCGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	97619258	97633509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630134_97630239_97630912_97633176_97633275
8259	chr2	+	3311	5	NIC	ENSMUSG00000078906.10	novel	1281	4	NA	NA	-52	1845	combination_of_known_junctions	FALSE	canonical	3	233	junction_1	354.600743795046	113	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGACAAACAGAAATATCTG	NA	False	NA	NA	False	NA	NA	NA	174851981	174862886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749_174858811_174859951
8260	chr2	+	4165	14	NNC	ENSMUSG00000033411.17	novel	5053	13	NA	NA	-17	156	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_8	135.240613976124	122	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAAGCCCTTCCCACATC	NA	False	NA	NA	False	NA	NA	NA	121786923	121843252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121827912_121828338_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
8261	chr17	-	3804	6	NNC	ENSMUSG00000069743.6	novel	3686	5	NA	NA	9	4	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	13.6674796506159	128	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGAACTTGGTTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	22064731	22035861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22039170_22040050_22040178_22042824_22042873_22059126_22059250_22059604_22059696_22064624
8263	chr10	+	2758	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	7	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	768.164478914944	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGATCAAAAGTGTCATA	NA	False	NA	NA	False	NA	NA	NA	41395503	41407032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404670_41405226_41405280
8265	chr7	+	3459	10	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-15	-248	intron_retention	TRUE	non_canonical	0	0	junction_8	289.227323129134	1	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868028	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825_103883002_103883048
8267	chrX	-	2190	15	NNC	ENSMUSG00000085396.8	novel	3850	12	NA	NA	13	-9884	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	37.3289978653681	1	80	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAGGAAAGCTGCCATAG	NA	False	NA	NA	False	NA	NA	NA	49724167	49661885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49662022_49662100_49662191_49666158_49666295_49666747_49666902_49669215_49669298_49669689_49669827_49670279_49670434_49676830_49676988_49684337_49684493_49687010_49687166_49689620_49689776_49704237_49704393_49715313_49715387_49719767_49719873_49723821
8270	chr15	+	3322	19	ISM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	41	3	14	-3	intron_retention	FALSE	canonical	1	369	junction_14	161.316650499553	2441	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGGCTGTTGATCCTCTG	NA	False	NA	NA	False	NA	NA	NA	89239979	89257026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296
8272	chr2	+	5007	22	NIC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-49	1	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	60.4211973436093	358	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTGTGCCCTGCCTTCT	4593	False	NA	NA	False	NA	NA	NA	18069397	18217200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18069676_18069845_18070006_18075935_18076016_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
8273	chr2	-	2842	18	NNC	ENSMUSG00000027620.17	novel	2127	18	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	816.798696575015	1748	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACAAGAAAATTTTCGTT	NA	False	NA	NA	False	NA	NA	NA	156022104	155989170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016115_156019255_156019306_156021096_156021161_156021806
8274	chr17	-	2967	16	Antisense	novelGene_ENSMUSG00000024151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCCCAACCTCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	88031021	87979956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_87980232_87985632_87985789_87987225_87987505_87989956_87990108_87992866_87993013_87993721_87993856_87996367_87996568_88003920_88004031_88014607_88014733_88015878_88016028_88020053_88020153_88024880_88025126_88026022_88026229_88026710_88026962_88028308_88028485_88030756
8275	chr17	+	3224	23	Antisense	novelGene_ENSMUSG00000077931.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	827	12	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGCCGTTTCCGCTTCCGG	NA	False	NA	NA	False	NA	NA	NA	36267710	36280644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36268482_36268570_36268646_36268734_36268796_36268961_36269137_36269219_36269250_36269960_36270032_36270120_36270193_36270324_36270613_36270759_36270881_36271000_36271085_36271465_36271620_36271704_36271844_36271928_36272122_36272592_36272716_36272877_36272979_36274019_36274129_36274212_36274284_36274459_36274570_36274644_36274688_36274808_36274939_36275145_36275232_36275905_36276016_36280537
8276	chr17	-	1076	7	Antisense	novelGene_ENSMUSG00000098269.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGCCTCCCGCCTTCCCGG	NA	False	NA	NA	False	NA	NA	NA	35470356	35460748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35460827_35462086_35462426_35463110_35463238_35463429_35463523_35465910_35466096_35467925_35468046_35470222
8279	chr8	-	2277	15	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	902.023417045233	3	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTACTTGGCTTCACTG	NA	False	NA	NA	False	NA	NA	NA	26337720	26306904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26329738_26329917_26330039_26330104_26337606
8285	chr5	+	2118	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	405	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1571.43929051904	3715	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864466	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129868988_129869111_129869162_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
8286	chr17	-	2527	4	Intergenic	novelGene_51	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	11	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACAAATCACTTAAGCCT	NA	False	NA	NA	False	NA	NA	NA	17426478	17399631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17399641_17422423_17423081_17423322_17423383_17424677
8288	chr7	-	3731	6	Antisense	novelGene_ENSMUSG00000058638.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAATGGCGCTCGCCCGT	NA	False	NA	NA	False	NA	NA	NA	12583855	12568965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_12569091_12569368_12570346_12571014_12571110_12578356_12578832_12580721_12580822_12581896
8289	chr1	+	4553	11	NNC	ENSMUSG00000026280.18	novel	4173	13	NA	NA	-12	-1178	intron_retention	FALSE	canonical	1	1	junction_10	101.529109126398	8	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTTGTGTGTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	93682744	93717154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93714448_93715407
8290	chr11	-	2707	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	723.2799519473	4	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5224	False	NA	NA	False	NA	NA	NA	88846268	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835603_88837583_88838061_88843231_88843381_88846119
8291	chr11	-	3664	17	FSM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	152	0	-6	0	multi-exon	FALSE	canonical	3	352	junction_6	42.6075385788712	447	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3533	False	NA	NA	False	NA	NA	NA	115494725	115475080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
8292	chr6	-	3130	15	NIC	ENSMUSG00000053470.14	novel	4853	26	NA	NA	1531	-8	intron_retention	FALSE	canonical	3	336	junction_8	46.3909737877919	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	71584592	71566028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71566700_71567421_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385
8293	chr3	+	4302	22	NIC	ENSMUSG00000015522.19	novel	4260	21	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	99.632476560043	221	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTTGTGTTGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	95341719	95404550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401011_95401127_95401757_95401925_95402614
8295	chrX	+	2398	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1137.63078369039	2	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487157_100488293_100488397_100488900_100488941_100489724_100489835_100491199
8296	chr6	+	2495	10	ISM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	540	92	2	-92	intron_retention	FALSE	canonical	3	5555	junction_1	294.003065407719	18	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5150	False	NA	NA	False	NA	NA	NA	85429035	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008
8297	chr3	+	4256	22	NIC	ENSMUSG00000027820.13	novel	3782	23	NA	NA	115	-211	intron_retention	FALSE	canonical	3	117	junction_1	73.8082949206454	3	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCCCTTACTAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	63203630	63288833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
8298	chr4	-	2411	4	ISM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	1503	2	1491	-2	3prime_fragment	FALSE	canonical	3	195	junction_3	134.219554793215	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTTTGACTTGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	147725462	147696397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368
8299	chr3	+	3296	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_2	127.607252719998	388	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCAGTCGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	54600243	54636176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600835_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
8300	chr11	-	2013	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1334.5135424797	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9652	False	NA	NA	False	NA	NA	NA	106679322	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676327_106677720_106677901_106679098
8302	chr18	+	2927	19	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-43	-3	intron_retention	FALSE	canonical	1	6	junction_3	254.283282294218	2	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	6206	False	NA	NA	False	NA	NA	NA	34758016	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759989_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
8303	chr6	+	2167	5	NNC	ENSMUSG00000012396.13	novel	2011	5	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	1086	junction_1	1448.71328685147	1739	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684462	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684568_122684675_122684893_122688496_122688763_122689587_122689675_122690100
8305	chr10	+	2753	11	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	13	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	462.947772432269	1	108	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTCCTGCCTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	128173615	128198192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185669_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
8306	chr2	+	3634	23	NNC	ENSMUSG00000027006.14	novel	4042	23	NA	NA	279	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	62.7204377040301	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTGAAGATGATTGTT	NA	False	NA	NA	False	NA	NA	NA	80146088	80184391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_80146150_80147592_80147811_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
8307	chr9	-	5178	39	NNC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	267.00351704864	2	177	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAGCACCCAGCTAGTGA	NA	False	NA	NA	False	NA	NA	NA	20864140	20818512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831255_20831425_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840424_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851857_20852668_20852880_20852994_20853103_20853878_20853916_20864003
8308	chr13	-	4241	33	Antisense	novelGene_ENSMUSG00000077360.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	142	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGCAGCCTGCGACCACG	NA	False	NA	NA	False	NA	NA	NA	49887738	49835655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_49835680_49840865_49840988_49841632_49841785_49841996_49842117_49843920_49844004_49844966_49845086_49846497_49846646_49855317_49855435_49856619_49856737_49857741_49857872_49858313_49858410_49859284_49859362_49860157_49860282_49861886_49861953_49863051_49863258_49865232_49865310_49868286_49868354_49869163_49869304_49871379_49871501_49873051_49873144_49874554_49874635_49875632_49875743_49876144_49876235_49876466_49876551_49878091_49878267_49878694_49878805_49879628_49879729_49880600_49880776_49882130_49882239_49883488_49883615_49884909_49885036_49885813_49885967_49887132
8309	chr9	-	3676	19	NNC	ENSMUSG00000032480.18	novel	3806	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	145.718356792042	4	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109930106	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913877_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
8310	chr7	+	2672	2	NNC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	127	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAACCAGACTTGCTG	75	False	NA	NA	False	NA	NA	NA	44465511	44480223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465884_44477923
8311	chrX	+	4247	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-25	8	-25	-8	multi-exon	TRUE	canonical	3	360	junction_3	33.4381425171914	404	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTCATATTTTTAATG	NA	False	NA	NA	False	NA	NA	NA	36390422	36414391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
8312	chr7	+	4065	22	Genic_Genomic	ENSMUSG00000109168.2	novel	448	2	NA	NA	1505	19882	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	65	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGCTCTCTCGCGAGAAC	NA	False	NA	NA	False	NA	NA	NA	28015827	28038180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_28015870_28016211_28016314_28016409_28016541_28016640_28016928_28017163_28017257_28018177_28018289_28018378_28019541_28019646_28019798_28021423_28021564_28021643_28021739_28021888_28021993_28023148_28023224_28023320_28023404_28025370_28025627_28028127_28028215_28028675_28028749_28028839_28028909_28029006_28029078_28029442_28030074_28030797_28030953_28037774_28037861_28038119
8315	chr1	-	4194	7	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	169	-23	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_6	375.53402716073	8	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAATGAATTCAACTCT	NA	False	NA	NA	False	NA	NA	NA	167112001	167050474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167111970
8316	chr13	+	3038	27	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	-4	-7	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_4	116.461951274545	8	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18901451	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929507_18978517_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
8317	chr10	-	5728	19	ISM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	61	0	61	0	intron_retention	FALSE	canonical	3	184	junction_16	15.563490039905	4	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	78020922	78006742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779
8318	chr8	-	3453	9	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	-22	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	671.104954068289	23	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAAAACATGTT	NA	False	NA	NA	False	NA	NA	NA	125589726	125563697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125587772_125587969_125588011_125589623
8319	chr2	-	3280	8	ISM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	-15	2	0	-2	intron_retention	FALSE	canonical	3	1117	junction_5	124.097558725515	10	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGGAGTACGTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	172212441	172198117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905
8320	chr9	+	2340	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	153.603311538814	2	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCTCTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	108385255	108393136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390297_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391393_108391545_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
8321	chr12	-	3788	24	NIC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-13	-2339	intron_retention	FALSE	canonical	3	94	junction_3	437.975256312245	1	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATTTTCATGAAGGCTT	NA	False	NA	NA	False	NA	NA	NA	13299177	13269312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
8322	chr6	-	2693	11	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-3	-6	intron_retention	FALSE	canonical	1	2	junction_1	2179.9780297058	8	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAATTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51446867	51438109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439545_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
8323	chr2	-	2719	13	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	113	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCGGAAGCGGAAGCCC	NA	False	NA	NA	False	NA	NA	NA	152122354	152068783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068861_152092316_152092531_152096128_152096240_152099295_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118950_152120884
8325	chr11	+	4133	23	FSM	ENSMUSG00000020898.19	ENSMUST00000021278.14	4164	23	16	15	1	-12	multi-exon	FALSE	canonical	3	209	junction_14	54.4241833704208	278	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGGACTTTCTGACCTGT	5102	False	NA	NA	False	NA	NA	NA	68906752	68927284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
8326	chrX	+	3283	9	Antisense	novelGene_ENSMUSG00000080862.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGAGCTGCTGCGGCCG	NA	False	NA	NA	False	NA	NA	NA	23085530	23231256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_23087091_23094811_23094927_23101464_23102259_23113597_23113795_23114348_23114554_23127625_23127813_23181368_23181434_23227725_23227824_23231194
8327	chr3	+	2419	14	ISM	ENSMUSG00000034349.15	ENSMUST00000148385.8	4057	24	14054	1468	147	72	internal_fragment	FALSE	canonical	3	589	junction_3	129.848751341136	1	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAATAAACTAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	68926394	68940488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358
8328	chr2	+	3215	7	ISM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	42	1	42	-1	intron_retention	FALSE	canonical	3	1115	junction_3	98.5646995632818	2	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8611	False	NA	NA	False	NA	NA	NA	72306544	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942
8331	chr1	+	3421	27	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-11	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	228.936391388034	13	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCTGAGAGCCTCCTG	3055	False	NA	NA	False	NA	NA	NA	171910386	171949880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933728_171940700_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
8332	chr11	-	4312	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	-23	0	-23	0	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	363	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTCTTTGGTTATCTG	NA	False	NA	NA	False	NA	NA	NA	76654428	76617427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
8333	chr16	+	3287	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	145	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTGACTACTGTGTTGAA	NA	False	NA	NA	False	NA	NA	NA	13598608	13632698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631631_13631888
8334	chr2	+	5767	17	FSM	ENSMUSG00000026827.13	ENSMUST00000169687.8	5745	17	-21	-1	-21	1	multi-exon	TRUE	canonical	3	41	junction_1	44.6148447828747	221	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTGTTGGCATTTTGAT	NA	False	NA	NA	False	NA	NA	NA	57127668	57260732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_57128001_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
8335	chr18	-	4053	16	NIC	ENSMUSG00000041225.17	novel	4431	18	NA	NA	-14	-21	combination_of_known_junctions	FALSE	canonical	3	24	junction_15	48.531593375404	29	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTAATATTTTCCTTCCT	-37	True	NA	NA	False	NA	NA	NA	6135984	6024447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6135803
8337	chrX	-	2126	5	ISM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	65	1	7	-1	intron_retention	FALSE	canonical	3	14744	junction_4	944.404938307715	95	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232935	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427
8338	chr8	+	3074	15	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	518.869989811061	2	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCTGTGTTTCTTGGT	8901	False	NA	NA	False	NA	NA	NA	120637626	120684294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637691_120658587_120658657_120663269_120663328_120667848_120668315_120668450_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
8339	chr14	-	4155	25	NNC	ENSMUSG00000037572.18	novel	4260	25	NA	NA	9	-9	at_least_one_novel_splicesite	FALSE	canonical	1	27	junction_24	87.1525542272476	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTGCATATTTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	47514280	47478409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47514064
8340	chr4	+	3502	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43226	2534	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	129.137416042843	1	155	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTATTGTCCTGTAACTAA	NA	False	NA	NA	False	NA	NA	NA	147533647	147600477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533956_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597810_147598229_147598717_147599053
8341	chr9	+	3518	18	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	intron_retention	FALSE	canonical	3	473	junction_5	39.9836471763456	3	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385258	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389978_108390058_108390168_108390264_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
8342	chr10	+	4143	21	FSM	ENSMUSG00000036875.16	ENSMUST00000131422.8	4122	21	-22	1	-22	0	multi-exon	FALSE	canonical	0	0	junction_20	65.9729300546823	352	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACTGAGTCATTTTTCA	NA	False	NA	NA	False	NA	NA	NA	62782782	62809963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554_62805738_62807622_62807770_62809029
8343	chr15	+	4627	11	NIC	ENSMUSG00000022255.17	novel	6919	12	NA	NA	42	-2087	combination_of_known_junctions	FALSE	canonical	3	69	junction_10	158.303032188269	48	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTACATTCTCTGTGGGA	100	False	NA	NA	False	NA	NA	NA	34082912	34143683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34140837
8345	chr14	+	4223	40	NNC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	14	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	244.975652562566	1	93	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATAATAAAACTGTTTG	NA	False	NA	NA	False	NA	NA	NA	47886786	47973758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887855_47888029_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930957_47931337_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938490_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47973556
8346	chrX	+	3125	22	NNC	ENSMUSG00000041133.12	novel	617	3	NA	NA	810	-730	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	242.928458249881	1	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAGGAGCCTAATCTAA	NA	False	NA	NA	False	NA	NA	NA	150800233	150844960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150800288_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810743_150816733_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
8347	chr11	-	3486	11	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	70	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	272.1683302664	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAACCTTGAGTCCATTT	NA	False	NA	NA	False	NA	NA	NA	88755342	88721623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736538_88755264
8348	chr7	-	2543	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	-1755	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	519.842388974774	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCATCTGCCTCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	33865598	33840124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33865419
8349	chr6	+	2722	15	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-30	0	intron_retention	FALSE	canonical	3	728	junction_3	40.8296610871288	1422	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5407	False	NA	NA	False	NA	NA	NA	125108841	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
8351	chr2	+	2826	23	NIC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	2424	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_22	81.3904602812479	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTGTCTGTATTGTGGT	9004	False	NA	NA	False	NA	NA	NA	180983327	180998407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998138
8352	chr11	+	3194	23	NNC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	146.74735133544	195	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCAGCCTGCCTGCTGTCG	NA	False	NA	NA	False	NA	NA	NA	6241626	6306637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305311_6306352
8354	chr5	+	3840	4	Antisense	novelGene_ENSMUSG00000029363.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	46	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGAAGAGAGGATGCT	7268	False	NA	NA	False	NA	NA	NA	117517514	117523535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117519979_117520400_117521620_117522595_117522669_117523451
8355	chrX	+	3012	23	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	73	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	735.84212733686	1	105	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529209	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529265_20535434_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
8356	chr3	+	3131	8	NNC	ENSMUSG00000015749.13	novel	1381	7	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	708.186761946253	2	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836589	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836852_95836923_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
8357	chr2	+	1110	1	Genic_Genomic	ENSMUSG00000035772.12	novel	NA	NA	NA	NA	1988	9	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTTGAACCCGTACCAA	NA	False	NA	NA	False	NA	NA	NA	28360089	28361199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_28360100_28361200
8358	chr19	-	4728	16	FSM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	329	0	329	0	multi-exon	FALSE	canonical	3	653	junction_7	84.8678973464054	404	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTGTGCTGCTTTTT	5805	False	NA	NA	False	NA	NA	NA	45771661	45738697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
8359	chr15	+	5603	5	Antisense	novelGene_ENSMUSG00000115206.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGGGCGCGCCCGCCCTG	NA	False	NA	NA	False	NA	NA	NA	4012999	4025201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_4015961_4018071_4018188_4019036_4021346_4021836_4021949_4025096
8362	chr2	+	2918	13	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	4	-1524	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	44.497815177327	2	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTATCAAGGTTAGAT	NA	False	NA	NA	False	NA	NA	NA	152068762	152122248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152069152_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
8364	chr3	-	3041	11	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	-24	-158	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	532.597230559829	1550	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGTGTCTGTCCTTTC	9254	False	NA	NA	False	NA	NA	NA	104771740	104730252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104732441_104732722_104732786_104735240_104735328_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
8366	chr4	-	2716	11	Antisense	novelGene_ENSMUSG00000094177.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCGAGAATGCTGGAATG	NA	False	NA	NA	False	NA	NA	NA	145556692	145237358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237514_145239472_145239643_145243729_145243841_145295285_145295386_145299305_145300049_145322277_145322345_145343685_145343744_145552676_145552805_145554255_145554401_145554814_145555638_145556476
8367	chr10	-	6449	24	FSM	ENSMUSG00000039116.8	ENSMUST00000238680.2	4482	24	6	-1973	6	-6	multi-exon	FALSE	canonical	3	20	junction_19	18.4758566210825	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAATTATTCAGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	14420774	14278332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
8369	chr7	+	4235	20	NNC	ENSMUSG00000055319.9	novel	4505	19	NA	NA	7	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	45.967349607269	240	45	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTCTTTTTAAAGCTGCA	1938	False	NA	NA	False	NA	NA	NA	128346673	128386538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357072_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151_128385885_128386092
8371	chr11	-	2300	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-25	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1801.1392902981	2	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9240	False	NA	NA	False	NA	NA	NA	106679734	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676119_106676218_106676309_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679607
8372	chr4	+	666	1	Intergenic	novelGene_2021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTATCAATGCTTTGTT	5101	False	NA	NA	False	NA	NA	NA	145273149	145273815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_145273100_145273800
8373	chr8	-	3263	12	NIC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	-44	0	intron_retention	FALSE	canonical	3	1149	junction_8	195.358454180603	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737999	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
8375	chr12	+	4660	26	NNC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-10889	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	276.988664027971	21	97	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	45	False	NA	NA	False	NA	NA	NA	109559352	109628150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109560135_109560538_109560665_109566249_109566374_109570201_109570274_109570379_109570501_109572647_109572778_109573847_109573931_109583607_109583784_109586746_109586835_109591534_109591610_109593481_109593567_109604272_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611695_109611766_109615587_109615677_109616505_109617069_109617125_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626234_109627280
8376	chr19	-	2069	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1104.86017214849	8	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902374	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895616_15895776_15896818_15896889_15898299_15898361_15902227
8377	chr11	-	4314	1	Genic_Genomic	ENSMUSG00000025140.16	novel	NA	NA	NA	NA	-12	13	mono-exon	FALSE	NA	NA	NA	NA	NA	7	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCAACCTATTTGTCA	NA	False	NA	NA	False	NA	NA	NA	120534542	120530228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_120530200_120534500
8378	chr12	+	3058	28	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	275.502165277702	7	50	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	8007	False	NA	NA	False	NA	NA	NA	76302167	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358671_76361174_76361283_76361722_76361876_76364380_76364475_76366354
8379	chr5	-	2741	12	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10663	-8022	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	58	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTGCGGGGTCTTCTC	3890	False	NA	NA	False	NA	NA	NA	129875176	129864466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864641_129865295_129865360_129866114_129866252_129866880_129867053_129867645_129867751_129868530_129868644_129868845_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129873808_129874494_129874585
8380	chr10	+	4001	15	Antisense	novelGene_ENSMUSG00002076247.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	74	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTCCCCCTTCCGCCGCC	1325	False	NA	NA	False	NA	NA	NA	60934418	60983412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_60936787_60937458_60937581_60938346_60938549_60938989_60939140_60940236_60940392_60941200_60941299_60942042_60942150_60943355_60943440_60947935_60948069_60949215_60949294_60949788_60949937_60953473_60953533_60959078_60959258_60982039_60982114_60983368
8383	chr8	-	4531	4	FSM	ENSMUSG00000031665.8	ENSMUST00000034090.8	5265	4	9	725	9	-725	multi-exon	FALSE	canonical	3	24	junction_3	110.426446107805	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAAAATTTTATCAGCGA	NA	False	NA	NA	False	NA	NA	NA	89770781	89754587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_89755447_89756571_89760027_89768979_89769073_89770657
8384	chr19	-	3419	5	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	6	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	102.28972333524	103	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAGAAATTTATTTCACT	1930	False	NA	NA	False	NA	NA	NA	8796652	8786429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8789203_8793217_8793401_8795799_8795873_8795926_8796049_8796384
8385	chr2	-	3838	21	NNC	ENSMUSG00000006800.15	novel	3927	21	NA	NA	-47	-5	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_20	188.49392563157	3	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAAAAGGCTATCTTGG	NA	False	NA	NA	False	NA	NA	NA	165997252	165915844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996997
8386	chr7	-	3039	21	NIC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1234	junction_20	87.9256930595375	5	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143153793	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
8387	chr16	-	2337	9	Antisense	novelGene_ENSMUSG00000065208.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGTTAATAATGAAACTA	NA	False	NA	NA	False	NA	NA	NA	22932431	22927466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_22927600_22927867_22928008_22928732_22928904_22928983_22929092_22929327_22929472_22929873_22930011_22930249_22930342_22930565_22930645_22931098
8388	chr6	-	4514	5	FSM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	74	-1	1	1	multi-exon	FALSE	canonical	3	155	junction_4	32.9194091684526	255	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTCTCAGACTCAGC	5	True	NA	NA	False	NA	NA	NA	13608025	13580684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13607828
8389	chr15	-	2271	15	NNC	ENSMUSG00000022476.9	novel	2542	6	NA	NA	-4	-9834	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1026	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTTATGTCCTATTAAAA	NA	False	NA	NA	False	NA	NA	NA	81799334	81783340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81783420_81787673_81787834_81788054_81788205_81788960_81789066_81790049_81790143_81791624_81791730_81793687_81793849_81794042_81794114_81794610_81794724_81796084_81796209_81796405_81796560_81797303_81797497_81797878_81798012_81798436_81798559_81798826
8390	chr14	+	4087	8	NIC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1267	intron_retention	FALSE	canonical	3	6333	junction_1	530.847531821347	5	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACATTGGCAGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	63359964	63380579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
8392	chr11	+	3169	10	NIC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	10	-9	combination_of_known_splicesites	FALSE	canonical	2	44	junction_2	477.798888422501	6	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATTCTTAAACGAATCAG	NA	False	NA	NA	False	NA	NA	NA	109541756	109560473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_109541900_109544604_109544788_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
8394	chr14	+	3192	14	FSM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	13	-266	13	266	multi-exon	FALSE	canonical	3	627	junction_4	88.7108193370776	1209	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGGGCTTGTTCTGACT	1791	False	NA	NA	False	NA	NA	NA	56905717	56935153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
8395	chr10	+	2710	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	1465	6	intron_retention	FALSE	non_canonical	0	0	junction_3	460.523872004905	1	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTGAGCCCTTCATTCT	1148	False	NA	NA	False	NA	NA	NA	79692336	79700199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79692369_79694585_79694659_79694785_79694867_79694905_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
8396	chrX	+	2710	12	NNC	ENSMUSG00000031303.9	novel	4348	29	NA	NA	133786	15011	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGCGGGCGTCCCCAA	3541	False	NA	NA	False	NA	NA	NA	158905214	158921358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158906694_158906771_158906943_158907513_158907626_158909191_158909257_158910285_158910361_158910571_158910724_158911459_158911552_158912401_158912497_158913103_158913234_158915066_158915244_158916173_158916228_158921250
8397	chr18	+	4548	1	FSM	ENSMUSG00000117869.2	ENSMUST00000235956.2	1355	1	0	-3193	0	75	mono-exon	FALSE	NA	NA	NA	NA	NA	264	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTGACAAAGAGATAGCA	NA	False	NA	NA	False	NA	NA	NA	35686462	35691010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35686500_35691000
8398	chr6	-	2628	8	ISM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	4541	31	-463	-31	3prime_fragment	FALSE	canonical	3	923	junction_2	34.9068731902238	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACAAGCTGCCTCGTCAT	NA	False	NA	NA	False	NA	NA	NA	88491346	88480591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294
8400	chr3	-	3406	20	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	-49	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	473.348354618398	2	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTCTATGCAAAAGCCTC	NA	False	NA	NA	False	NA	NA	NA	104725670	104702162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707361_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104711913_104712243_104712408_104725282
8401	chr10	-	2094	3	Antisense	novelGene_ENSMUSG00000019970.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	118	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACCTCGTCTTGCGTGCG	NA	False	NA	NA	False	NA	NA	NA	21875802	21873142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_21873334_21873793_21873953_21874058
8402	chrUn_MU069435v1	+	586	1	Intergenic	novelGene_4770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCGGGCTTTCCCGTGG	NA	False	NA	NA	False	NA	NA	NA	1	587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
8403	chr14	-	6258	19	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	321	-4530	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_14	145.868239208803	151	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATGTTTAGTTAAAGTAG	NA	False	NA	NA	False	NA	NA	NA	62998240	62927782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62971076_62971300_62981357_62981448_62996649_62996800_62997614_62997693_62997996
8404	chrX	-	3403	4	NNC	ENSMUSG00000057836.13	novel	1645	9	NA	NA	1895	0	intron_retention	FALSE	canonical	3	9	junction_2	655.652855302764	1	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	72136714	72129900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72131048_72133005_72133105_72134464
8405	chr3	+	3492	5	ISM	ENSMUSG00000037730.14	ENSMUST00000047502.9	3394	7	2	4744	0	-3171	intron_retention	FALSE	canonical	3	110	junction_2	39.8018529719409	6	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTCCATTCTGGTAAGA	8787	False	NA	NA	False	NA	NA	NA	30656787	30667773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589
8406	chr4	-	2342	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-29	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	209.867196102678	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726999	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697531_147697782_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
8409	chr2	+	3365	7	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	2	intron_retention	FALSE	canonical	3	433	junction_6	775.649548586359	2	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGTGTGTATTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	130116349	130121229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130120211_130120332
8410	chr2	+	3601	15	NIC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	7	-949	intron_retention	FALSE	canonical	3	458	junction_8	45.7078678530674	41	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGATATGTGGTTACC	NA	False	NA	NA	False	NA	NA	NA	29825446	29849434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29825611_29826021_29826250_29828506_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
8411	chr6	-	2488	7	NNC	ENSMUSG00000039985.15	novel	2785	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	28	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847978	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823995_148824194_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
8413	chr15	-	3030	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	-4	-1	-4	1	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	1144	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTGTATGTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	94487764	94475830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
8414	chr11	+	1406	1	Genic_Genomic	ENSMUSG00000057219.12	novel	NA	NA	NA	NA	14469	1361	mono-exon	FALSE	NA	NA	NA	NA	NA	174	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGCCAGACCCGGAAAC	NA	False	NA	NA	False	NA	NA	NA	115381248	115382654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_115381200_115382700
8415	chr9	+	4097	4	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	2351	junction_1	98.4219939286382	13	103	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1178	False	NA	NA	False	NA	NA	NA	108437667	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108442445_108442525
8416	chr11	-	1949	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1698.61286054239	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106677315_106677371_106677734_106677960_106679296
8417	chr18	-	4084	15	NIC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	46	-219	intron_retention	FALSE	canonical	3	5978	junction_4	250.201347489805	1	127	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	245	False	NA	NA	False	NA	NA	NA	35087364	35070685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_35071447_35071636_35071778_35071985_35072491_35073249_35073368_35073892_35073998_35074917_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
8418	chr15	-	3255	17	NIC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-15	3	combination_of_known_junctions	FALSE	canonical	2	2	junction_16	8.39270516579726	524	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6979	False	NA	NA	False	NA	NA	NA	98560790	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560658
8419	chr4	-	1491	11	ISM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	108	4657	34	-254	5prime_fragment	FALSE	canonical	3	1390	junction_6	403.089369743237	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAAAATGGACCTCATT	0	True	NA	NA	False	NA	NA	NA	43000399	42984619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
8420	chrX	+	2655	15	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	7	-8	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	1043.53796758715	1	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCCTATTTTGAATTTGC	NA	False	NA	-59	True	NA	NA	NA	74139665	74153375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74139734_74140238_74140321_74140439_74140508_74140840_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
8421	chr9	+	4355	22	FSM	ENSMUSG00000038535.18	ENSMUST00000098576.10	4387	22	31	1	3	-1	multi-exon	FALSE	canonical	3	36	junction_20	11.1161666503221	206	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCCTGTTTGGCTAGCC	NA	False	NA	NA	False	NA	NA	NA	72182191	72271058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
8422	chr8	-	2800	16	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	4505	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	495.706346764112	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86021587	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987610_85988619_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014447_86016334_86016432_86021487
8423	chr2	+	3634	14	NNC	ENSMUSG00000033411.17	novel	5053	13	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_8	142.36493651152	197	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTACATATGCTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	121786953	121843090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121826401_121826488_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
8424	chr10	+	2813	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	24	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	618.176192970544	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCAAAAGTGTCATATTT	NA	False	NA	NA	False	NA	NA	NA	41395433	41407035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667_41405201_41405276
8426	chr10	-	3020	6	ISM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	1012	943	-226	-943	3prime_fragment	FALSE	canonical	3	350	junction_5	33.3190636122926	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAATCTGCTTTCCATGT	NA	False	NA	NA	False	NA	NA	NA	71073098	71062236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745
8427	chr16	+	1869	2	Genic_Genomic	ENSMUSG00000095834.3	novel	513	1	NA	NA	-250	1686	multi-exon	FALSE	canonical	3	950	junction_1	0	160	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAGAGTCCACAAGTAG	5912	False	NA	NA	False	NA	NA	NA	3548123	3550572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_3549120_3549699
8429	chrX	-	3458	8	Antisense	novelGene_ENSMUSG00000015291.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCTGCCCCTGCCGCTG	NA	False	NA	NA	False	NA	NA	NA	73355415	73348903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73349030_73350173_73350291_73350448_73350549_73350706_73350844_73351277_73351866_73352676_73353736_73353990_73354297_73354390
8430	chr3	+	380	2	FSM	ENSMUSG00000042737.10	ENSMUST00000040824.2	404	2	17	7	17	-7	multi-exon	FALSE	canonical	3	539	junction_1	0	3963	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTAATCTTGTGTAGT	6794	False	NA	NA	False	NA	NA	NA	89173875	89174377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89173914_89174035
8431	chrX	-	4471	7	NIC	ENSMUSG00000031297.15	novel	2717	11	NA	NA	40	-1	intron_retention	FALSE	canonical	3	1326	junction_3	70.3169412177622	7	138	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAACCAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	100128918	100122828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126253_100126396
8432	chr15	-	5011	16	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	3	0	intron_retention	FALSE	canonical	3	159	junction_14	184.163285036827	11	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	99549467	99518377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
8433	chr13	-	3992	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	-70	-2597	-70	2597	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	2236	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTCGTTGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	34089223	34061201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
8434	chr3	+	2688	7	NNC	ENSMUSG00000027601.14	novel	2953	8	NA	NA	-11548	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	424.278472494448	3	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGACAATACTATTATC	NA	False	NA	NA	False	NA	NA	NA	19254187	19274963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19254332_19260615_19260715_19265631_19265683_19269639_19269868_19271343_19271588_19272325_19272486_19273201
8436	chr4	-	4624	22	FSM	ENSMUSG00000033326.16	ENSMUST00000106406.9	4663	22	38	1	-27	-1	multi-exon	FALSE	canonical	3	48	junction_21	11.6270464270502	191	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTGACTGTGGTCTGCCC	NA	False	NA	NA	False	NA	NA	NA	118037202	117994154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118037089
8437	chr4	-	2906	9	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	518	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	527.600405136311	8	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323262	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304891_141304946_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
8438	chr19	-	2168	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	1374.81552522332	8	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902334	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895393_15895486_15895569_15895776_15896818_15896889_15898299_15898361_15902227
8439	chr9	-	3369	19	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	8580	False	NA	NA	False	NA	NA	NA	21313093	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299093_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21311747_21312241_21312463
8440	chr6	-	2633	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43534	-244	multi-exon	FALSE	non_canonical	0	0	junction_1	0	123	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACGCGCCGCCTCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	71852228	71808312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71828863_71829711_71829849_71833892_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849908_71851300
8442	chr12	-	4596	6	FSM	ENSMUSG00000020634.13	ENSMUST00000141360.2	965	6	-65	-3566	-65	2208	multi-exon	FALSE	canonical	3	58	junction_3	515.309770914544	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACACTGGATCCTCAGTAA	NA	False	NA	NA	False	NA	NA	NA	4957504	4926823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4944537_4944680_4952219_4952273_4957348
8443	chr16	-	8023	10	Antisense	novelGene_ENSMUSG00000034243.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	143	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGAGAAAATTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	36753402	36733409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_36737361_36738268_36740158_36744993_36745172_36746094_36746258_36746447_36746587_36748614_36748760_36748996_36749091_36749612_36749751_36751918_36752026_36752183
8444	chr7	+	3798	5	NNC	ENSMUSG00000078779.5	novel	3437	5	NA	NA	10	342	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	73.2154355310409	237	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATTTTGCATTGCTTG	418	False	NA	NA	False	NA	NA	NA	27538041	27556205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27538164_27542259_27542313_27543709_27543837_27545828_27545928_27552808
8445	chr4	-	3036	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	0	0	0	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	1370	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327235	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
8446	chr14	+	4242	23	NNC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_2	102.252048414487	1	70	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTCTCATTACTCGCGA	NA	False	NA	NA	False	NA	NA	NA	20724403	20744919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726086_20729634_20729732_20732746_20732909_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
8447	chr4	+	3381	16	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.249443825784929	2	74	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGCGGGACCGGCAGAA	NA	False	NA	NA	False	NA	NA	NA	135047799	135080485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054540_135056687_135056831_135059034_135059122_135059471_135059531_135065098_135065392_135067814_135067934_135068157_135068349_135069682_135069885_135071174_135071291_135071809_135071842_135074425_135074515_135080406
8448	chr8	-	2333	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	251.952131452008	66	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615029	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601077_96602408_96602503_96604340_96604498_96614844
8449	chr9	-	4121	25	Antisense	novelGene_ENSMUSG00000032267.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACACGTCCCGCCCCCG	NA	False	NA	NA	False	NA	NA	NA	48953811	48896674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_48896836_48911648_48911727_48912805_48912939_48914288_48914395_48915120_48915278_48919723_48919814_48920391_48920532_48921540_48921617_48922562_48922641_48926399_48926549_48927979_48928107_48929668_48929766_48935203_48935384_48937065_48937287_48938116_48938187_48939369_48939599_48942023_48942220_48943511_48943652_48946890_48947070_48947179_48947259_48948474_48948561_48949071_48949194_48950282_48950476_48952671_48953441_48953546
8450	chr5	-	4345	12	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	-80	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	607.136116915153	1	137	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGTCTGCAGCATTTAT	NA	False	NA	NA	False	NA	NA	NA	92231658	92200033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213615_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
8452	chr8	+	2802	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	23	0	23	0	multi-exon	TRUE	canonical	3	1214	junction_12	88.1479391228044	1204	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	69541320	69566363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
8453	chr11	+	2947	10	FSM	ENSMUSG00000059248.14	ENSMUST00000100193.8	2924	10	-18	-5	-18	0	multi-exon	FALSE	canonical	3	18	junction_1	196.831569283656	1092	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117222527	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
8454	chr6	+	4690	20	NNC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	7	-4440	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.946056855845	1	102	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCATGAAACGGGATGAC	NA	False	NA	NA	False	NA	NA	NA	83891362	83954379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83891458_83905634_83907138_83911942_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83944231_83944410_83946098_83946222_83949227_83949266_83953183
8455	chrX	+	2904	25	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	2	-81	combination_of_known_splicesites	FALSE	canonical	2	6	junction_4	272.530321325292	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGCAACAGCAGCAGCCG	NA	False	NA	NA	False	NA	NA	NA	143101020	143152686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
8456	chr12	-	2350	25	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-18	-2334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	448.860749255515	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299182	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273821_13275406_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
8457	chr5	-	3608	5	NNC	ENSMUSG00000063406.12	novel	3800	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	104.214622294571	7	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTACCTACTCC	NA	False	NA	NA	False	NA	NA	NA	108280418	108269492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101_108280212_108280335
8459	chr10	-	4321	25	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	137.592973617438	1	95	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAATCTGTGTAGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628063	62579713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599215_62599303_62600102_62600314_62601045_62601217_62601799_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627988
8460	chr13	-	3300	16	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	-246	-83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.0340224780715	98	31	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGTAGCTTCGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	119545779	119472066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472823_119474911_119475040_119491229_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511246_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
8461	chr17	+	2302	15	NNC	ENSMUSG00000007564.16	novel	750	5	NA	NA	314	4	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	345.623696808998	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCTAGTCTTAGTAATC	NA	False	NA	NA	False	NA	NA	NA	21166062	21186171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21166235_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
8462	chr12	+	2756	26	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-16	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	272.124718465633	78	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGCTACCTTGGTGTT	8010	False	NA	NA	False	NA	NA	NA	76302170	76366567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76366483
8463	chr14	+	2134	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	5	1262	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2294.59022942826	34	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTTGACATTGGCAGG	NA	False	NA	NA	False	NA	NA	NA	63359915	63380574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371219_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
8465	chr6	-	3132	11	NIC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	11	-33	intron_retention	FALSE	canonical	3	923	junction_2	42.2242821134948	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACAAGCTGCCTCGTC	9183	False	NA	NA	False	NA	NA	NA	88495799	88480593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492552_88495352_88495421_88495667
8466	chr3	+	4486	12	NNC	ENSMUSG00000039047.18	novel	1761	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	119.183863792167	1079	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAACCTTTCTTGTGCAGT	3963	False	NA	NA	False	NA	NA	NA	152419742	152494658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032_152491870_152492109
8468	chr6	-	2969	12	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-28	-24	intron_retention	FALSE	non_canonical	0	0	junction_3	291.315000904633	1	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9144	False	NA	NA	False	NA	NA	NA	88495838	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483893_88484261_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
8469	chr19	-	3256	8	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-26	-7	intron_retention	FALSE	canonical	0	0	junction_4	300.769421480906	6	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAATGGAGTTTGTGAT	8411	False	NA	NA	False	NA	NA	NA	43512950	43488197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493767_43494757_43495874_43496308_43496433_43504119_43504302_43512776
8470	chr2	-	4184	28	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-60	-18	intron_retention	FALSE	canonical	3	12	junction_27	69.410055682905	2	101	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATGTCTTGGAAGGAC	NA	False	NA	NA	False	NA	NA	NA	103591331	103551622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591139
8471	chr11	-	2033	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	717.347675468458	10	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	5211	False	NA	NA	False	NA	NA	NA	88846281	88814847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826726_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
8472	chr10	-	2560	15	Antisense	novelGene_ENSMUSG00000004207.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCAGACGCCAGTGCGCAG	NA	False	NA	NA	False	NA	NA	NA	60138377	60113488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_60113604_60127419_60127554_60128283_60128356_60129124_60129254_60130311_60130509_60130742_60130889_60131725_60131782_60134875_60135007_60135240_60135337_60135555_60135837_60135925_60136081_60136312_60136397_60136550_60136661_60137472_60137893_60137943
8474	chr16	-	3002	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	296.566912506689	11	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAACTGTATCATTGTACC	8116	False	NA	NA	False	NA	NA	NA	4867721	4831770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832823_4833114_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
8475	chr18	+	3677	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	6	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	435.161506032163	1	112	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTAAGAACCAAGTCTAAG	NA	False	NA	NA	False	NA	NA	NA	35251945	35387815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285658_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
8476	chrX	+	4649	27	NNC	ENSMUSG00000000037.18	novel	1257	12	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	125.478875612001	1	126	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACCACAGCAATTAACAG	175	False	NA	NA	False	NA	NA	NA	159865517	160041190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159865687_159869958_159870023_159878108_159878187_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008877_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014476_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
8477	chr1	-	4556	21	NIC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	12	-2	combination_of_known_junctions	FALSE	canonical	3	11	junction_19	43.3662022778108	174	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTGCTTCAGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36408224	36374812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404667_36406849_36407116_36408185
8479	chr11	+	3076	10	NNC	ENSMUSG00000059248.14	novel	647	4	NA	NA	708	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	200.265811015581	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	2	True	NA	NA	False	NA	NA	NA	117199687	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117199969_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
8480	chr1	-	2261	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2051.20369337518	5	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTAATACTTCCTAGAGG	NA	False	NA	NA	False	NA	NA	NA	86287096	86278211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279153_86280000_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
8481	chr18	+	2924	6	NIC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_3	152.012367917877	119	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	21134943	21161281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21157465_21157574_21159142
8482	chr6	+	2764	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	30	435	17	111	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGGAGACCAGAGATAAT	16	False	NA	NA	False	NA	NA	NA	29348134	29376239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
8483	chr11	-	3360	3	NIC	ENSMUSG00000038615.18	novel	3530	4	NA	NA	-10	-4	intron_retention	FALSE	canonical	3	60	junction_2	5.5	3	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGATTCAGCTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	96714963	96708260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96711343_96712929_96713146_96714901
8484	chr1	+	3738	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	-108	-876	-74	-6	multi-exon	FALSE	canonical	3	418	junction_1	55.9704063816991	598	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTGCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	171975576	172023950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
8486	chr1	-	2117	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1992.83916018512	15	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCAGACTTAATACTTC	NA	False	NA	NA	False	NA	NA	NA	86287128	86278218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86284746_86285058_86285175_86285828_86285946_86286927
8487	chr2	+	2728	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	47.0063573693612	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	152068762	152123767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152121142_152122610
8490	chr19	+	3573	10	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-22	78	combination_of_known_junctions	FALSE	canonical	3	71	junction_5	59.2792096047006	477	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGATTCTGCATTGAATAGA	NA	False	NA	NA	False	NA	NA	NA	10502607	10525095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
8491	chr9	-	4709	15	FSM	ENSMUSG00000056167.9	ENSMUST00000217296.2	4866	15	36	121	4	-121	multi-exon	FALSE	canonical	3	299	junction_3	61.1176934199876	21	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTGAATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114469130	114425025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
8493	chr3	-	3948	6	NIC	ENSMUSG00000039795.15	novel	743	7	NA	NA	417	-11	intron_retention	FALSE	canonical	3	339	junction_1	190.780921478014	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGCGAGACAATTATTGC	NA	False	NA	NA	False	NA	NA	NA	10415956	10405025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411298_10412224_10412265_10413569
8494	chr6	+	2872	2	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCTGAGTCATGAGACAC	3975	False	NA	NA	False	NA	NA	NA	122711575	122715415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122712570_122713537
8495	chr7	-	3440	23	NIC	ENSMUSG00000032637.16	novel	3853	23	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	253.996551027537	332	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	7242	False	NA	NA	False	NA	NA	NA	126101272	126090884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126091388_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
8496	chr6	+	2498	11	NIC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-11	-89	intron_retention	FALSE	canonical	3	5555	junction_1	316.42939180803	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGTGTGTTTTTCATAA	5137	False	NA	NA	False	NA	NA	NA	85429022	85445368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85429110_85436096_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
8498	chr11	-	2765	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	0	-88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.147467918033	26	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758959	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11752257_11752364_11753064_11756095_11756216_11758894
8500	chr15	-	1935	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	390	97	390	-97	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGCCTTCAGCAGGCAGC	NA	False	NA	NA	False	NA	NA	NA	83056403	83037791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
8501	chr1	-	3485	13	NNC	ENSMUSG00000073643.12	novel	4551	12	NA	NA	11	-782	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.299471593825	40	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTCTTTACTGGTCCTT	NA	False	NA	NA	False	NA	NA	NA	79739427	79680760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_79681046_79681270_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
8503	chr13	+	2869	26	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	10	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	119.394633045209	6	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18901469	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923641_18978517_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
8505	chr2	-	4684	15	Intergenic	novelGene_2643	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	484	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGGGAAGGTGTCGCGC	3174	False	NA	NA	False	NA	NA	NA	69582855	69553180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_69553299_69561831_69561925_69562089_69562156_69562538_69562616_69562720_69562796_69563158_69563267_69563529_69563576_69564632_69564723_69566211_69566241_69566331_69566472_69571828_69572035_69573953_69574124_69576370_69576459_69579303_69579442_69579615
8506	chr5	-	4318	27	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	73.3449033817007	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCTTGTAAAGCACTTC	NA	False	NA	NA	False	NA	NA	NA	108777614	108717276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
8507	chr15	-	3032	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	20	0	-11	0	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	816	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	99549504	99518376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
8508	chr4	+	2949	18	FSM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	13	-7	13	7	multi-exon	FALSE	canonical	2	288	junction_12	49.6985375708199	1065	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACTGTTTCTGGTCAGT	NA	False	NA	NA	False	NA	NA	NA	44300888	44364682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
8509	chr10	-	2419	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	7	3	intron_retention	FALSE	canonical	3	1501	junction_10	185.925280690927	259	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTCTGTTTGATCCCC	NA	False	NA	NA	False	NA	NA	NA	127358306	127352988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
8510	chr18	+	3040	10	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	-87	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	421.519239342408	9	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTTAGGTCATGTTGA	1676	False	NA	NA	False	NA	NA	NA	35704892	35724471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35720666_35720907_35721363_35721507_35723432
8511	chr19	-	3270	8	FSM	ENSMUSG00000024764.11	ENSMUST00000025675.11	3231	8	-39	0	-39	0	multi-exon	FALSE	canonical	3	441	junction_1	30.7431757816732	642	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	NA	False	NA	NA	NA	7218587	7203037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
8512	chr18	+	3002	19	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-78	-3	intron_retention	FALSE	canonical	0	0	junction_1	256.985474201592	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	6171	False	NA	NA	False	NA	NA	NA	34757981	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758118_34758516_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
8513	chr10	-	4659	13	NNC	ENSMUSG00000032788.16	novel	5124	11	NA	NA	88	-151	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	130.678570886312	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGCCCAAGTCCCCAAG	6890	False	NA	NA	False	NA	NA	NA	78300721	78272728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78274937_78274978_78275713_78275896_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
8514	chrX	+	5408	7	NNC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1482	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.2878456553208	185	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGAAATTGCCCCTTC	9756	False	NA	NA	False	NA	NA	NA	134696854	134704213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134697086_134697697_134697787_134698301_134698379_134698536_134698614_134698771_134698899_134699132_134699223_134699496
8515	chr12	-	5615	15	Genic_Genomic	ENSMUSG00000099708.2	novel	2000	1	NA	NA	-41392	-475	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	47	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAAGCGCCTACTCGCCTA	9461	False	NA	NA	False	NA	NA	NA	83721999	83679082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_83679191_83689401_83689518_83691162_83691221_83692905_83693079_83694971_83695028_83698058_83698218_83706195_83706383_83707081_83707134_83707366_83711032_83714863_83715081_83715190_83715282_83718680_83718753_83719504_83719658_83721111_83721437_83721816
8516	chr1	+	2959	12	NNC	ENSMUSG00000116048.2	novel	3267	13	NA	NA	10062	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	379.749395398841	11	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93416844	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93416877_93418878_93419000_93423300_93423388_93425064_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434746_93435562
8517	chr8	+	3123	12	NIC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-14	-36	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	418.167944433891	2	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTGTCACCCATCAATAA	8813	False	NA	NA	False	NA	NA	NA	120637538	120684258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_120637679_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
8518	chr1	-	6363	9	FSM	ENSMUSG00000026135.18	ENSMUST00000027315.14	6480	9	36	81	36	-5	multi-exon	FALSE	canonical	3	25	junction_7	11.659223816361	82	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCATGTGTCCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	74627148	74605665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74619087_74624542_74624857_74626722
8519	chr11	-	3138	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-20	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.083078726175	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAACATAATTTGAATTTT	1362	False	NA	NA	False	NA	NA	NA	20062887	20012313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20014189_20014645_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
8521	chr4	-	2786	14	ISM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	3505	4	42	-4	3prime_fragment	FALSE	canonical	3	662	junction_12	54.7284852758754	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTCATGAGCTTCCTT	3476	False	NA	NA	False	NA	NA	NA	48469954	48430861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883
8523	chr10	+	2668	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	2	-2	intron_retention	FALSE	non_canonical	0	0	junction_11	583.969496163096	1	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTCTTCCCTGAGCCC	1563	False	NA	NA	False	NA	NA	NA	79690440	79700191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698608_79698659_79698704_79698811_79698890_79698978_79699062_79699118
8524	chr10	+	3764	9	NIC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	2	80	junction_3	539.707733407629	5	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAATGCTGCTGCTACTT	2291	False	NA	NA	False	NA	NA	NA	79795990	79806037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
8525	chr2	+	4118	15	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	19	1	intron_retention	FALSE	non_canonical	0	0	junction_13	624.266067033104	2	84	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157125521	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162104_157163712_157163793_157167630
8526	chr17	-	3190	22	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-3	-3	intron_retention	FALSE	canonical	0	0	junction_11	207.846009629295	10	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCATGTGCCTGTGGGGT	NA	False	NA	NA	False	NA	NA	NA	36280656	36267713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271761_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
8527	chr4	-	3398	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	42	2	42	-2	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	519	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGTTTGAGTGACTATA	-11	True	NA	NA	False	NA	NA	NA	41314847	41291301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
8528	chr16	+	2830	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	-212	-973	-212	1	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	2207	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCTATTTGTGAGCATT	6858	False	NA	NA	False	NA	NA	NA	38378847	38412525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
8529	chr9	-	3207	18	NNC	ENSMUSG00000031996.18	novel	3634	17	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_1	343.615400197074	5	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGCACCTTGTGTTCCT	8725	False	NA	NA	False	NA	NA	NA	31123101	31060857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31061693_31062128_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
8530	chr7	-	4919	26	NIC	ENSMUSG00000045659.19	novel	5149	27	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	52.8538210539219	2	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTGTCCTGGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	115907582	115722727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_115724056_115727788_115727929_115728626_115728761_115731855_115732012_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
8531	chr8	+	3895	21	NNC	ENSMUSG00000018796.14	novel	3897	21	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	92.9235707449945	421	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTCTTTCAAGTGCCTT	2210	False	NA	NA	False	NA	NA	NA	46924077	46989088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980224_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
8533	chr4	+	2421	10	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	10424	394	2950	-394	3prime_fragment	FALSE	canonical	3	1466	junction_6	55.8425918249538	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATAAAGTGTCTGAAAA	9920	False	NA	NA	False	NA	NA	NA	129093976	129113006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
8535	chr1	+	2313	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-45	279	-45	-279	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCAGAACTCGGGAGGC	NA	False	NA	NA	False	NA	NA	NA	4927991	4967849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
8536	chr5	-	3300	10	NIC	ENSMUSG00000029246.15	novel	3981	11	NA	NA	-41	-181	combination_of_known_splicesites	FALSE	canonical	1	12	junction_3	192.523014497257	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACCAGTTTCAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	77099053	77061303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_77063253_77063791_77063913_77065880_77066103_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
8537	chr2	+	3207	6	NNC	ENSMUSG00000027285.14	novel	3154	6	NA	NA	35	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	131.654699878128	5	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAATGTGGCTCCAATAT	NA	False	NA	NA	False	NA	NA	NA	120439898	120452035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120440027_120442818_120442912_120446335_120446469_120448048_120448213_120448353_120448463_120449455
8538	chr4	-	4706	14	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-8	-5	intron_retention	FALSE	canonical	3	12	junction_10	168.815714796136	59	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGACTCCTCAGGGGT	NA	False	NA	NA	False	NA	NA	NA	115980864	115951465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115976034_115976155_115980092_115980180_115980258_115980346_115980697
8539	chr4	-	4068	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	51	0	51	0	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	119	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000074	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
8540	chr17	-	2259	4	Intergenic	novelGene_43	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	307	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGACTGGCAGATCCCA	NA	False	NA	NA	False	NA	NA	NA	17426650	17399561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17399662_17422954_17423081_17423322_17423383_17424677
8542	chr19	-	2592	17	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-14	20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	565.943018333118	14	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTAGTGTGTGTGTGTG	3899	False	NA	NA	False	NA	NA	NA	5345450	5323939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337647_5344370_5344405_5345068_5345116_5345289
8545	chr2	-	3193	19	NIC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	184.057601356977	46	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017536	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
8546	chr2	+	2873	10	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	979.269569060986	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162910134	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162910236_162914543_162914835_162916301_162916383_162916459_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
8548	chr9	+	3365	25	Intergenic	novelGene_1158	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	86	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCGCTCCACAAAATGGCG	3030	False	NA	NA	False	NA	NA	NA	107617695	107648147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_107618291_107619589_107619720_107619798_107619898_107621035_107621111_107621381_107621562_107622133_107622205_107622284_107622439_107623219_107623380_107626906_107626999_107627206_107627292_107627661_107627751_107628920_107628991_107629074_107629153_107629309_107629398_107630175_107630273_107631219_107631382_107631621_107631688_107633051_107633113_107634107_107634194_107636976_107637046_107637517_107637593_107642695_107642850_107644741_107644908_107646759_107646825_107647749
8551	chr11	+	2724	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	0	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	754.535489924467	10	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGAATTTCACAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	20151438	20176815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20176693_20176747
8552	chr17	+	2931	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	459.234028936591	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4938	False	NA	NA	False	NA	NA	NA	87980034	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996522_88003949_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
8553	chr2	-	3119	4	NIC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	-22	-1	intron_retention	FALSE	canonical	3	494	junction_1	44.1134900002256	98	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGACTTTTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	75534855	75505857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_75507529_75507888_75508922_75509506_75509774_75534707
8554	chr18	+	2746	22	NIC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	27	-380	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	165.743429292812	3	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGAAATCAAAGCTATGT	9019	False	NA	NA	False	NA	NA	NA	32970332	32999073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
8555	chr14	+	3932	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-41	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	333.527195892629	1	165	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATTGAAATACAAAGAGGC	1790	False	NA	NA	False	NA	NA	NA	121148594	121184813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163740_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170348_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
8556	chr7	-	865	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	-92	1	-42	0	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	17061	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	28681331	28670797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
8557	chr11	-	2416	11	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-29	-2	intron_retention	FALSE	non_canonical	0	0	junction_10	586.459342154254	52	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCCATTGTCACTGCTG	3750	False	NA	NA	False	NA	NA	NA	120463696	120451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462536_120463517
8559	chr9	+	3386	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	606	junction_3	12.8322510366134	501	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGCCTTCACAGTT	NA	False	NA	NA	False	NA	NA	NA	114560237	114578412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
8560	chr5	-	2605	15	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	75	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_14	569.176244179934	14	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2972	False	NA	NA	False	NA	NA	NA	138169428	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169071
8561	chr3	+	3325	26	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	5268	26456	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGGAAAAAACAGATGG	794	False	NA	NA	False	NA	NA	NA	89913689	89955208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89913924_89915561_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922529_89922612_89922806_89924007_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935405_89935498_89935631_89935689_89938620_89938675_89941369_89941485_89941961_89942003_89945676_89945772_89946154_89946324_89951006_89951118_89952160_89952238_89955075
8562	chr17	+	3449	11	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	56.1648466569615	4	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9389	False	NA	NA	False	NA	NA	NA	36152566	36170562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161406_36162004_36162049_36163306_36163570_36169828
8563	chr13	-	2177	13	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	865	-3	intron_retention	FALSE	canonical	3	31	junction_3	2134.39042820193	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTTTGGTGGTCTTTTT	6867	False	NA	NA	False	NA	NA	NA	58548214	58539766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706
8564	chr2	+	2566	9	NIC	ENSMUSG00000055612.16	novel	582	3	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	410.749296256244	7	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8793	False	NA	NA	False	NA	NA	NA	72306726	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72307023_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
8565	chr5	-	2588	20	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	102.94314381602	108	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGACTGGCCTGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	30359960	30324425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333847_30334837_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
8566	chrX	+	3210	24	NNC	ENSMUSG00000031060.17	novel	3564	24	NA	NA	38	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	130.691211703906	455	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTCTACTTTCTC	595	False	NA	NA	False	NA	NA	NA	20484061	20517128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486291_20486354_20501969_20502154_20503723_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
8567	chr7	-	3307	18	NNC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	-45	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	349.051953777638	7	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGGACTCTGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	28661693	28592681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593813_28593925_28594085_28594856_28594921_28597503_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
8568	chr1	-	2351	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2068.03757419541	2	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACTTCCTAGAGGTTAC	NA	False	NA	NA	False	NA	NA	NA	86287096	86278207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284406_86284678_86285175_86285828_86285946_86286927
8569	chr4	+	4831	3	FSM	ENSMUSG00000028676.18	ENSMUST00000149878.8	394	3	-2285	-2152	-2285	0	multi-exon	FALSE	canonical	3	1274	junction_1	20.5	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	8077	False	NA	NA	False	NA	NA	NA	135586813	135593126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135589189_135590350_135590514_135590833
8570	chr4	-	3305	8	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-16	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	147.423034226026	155	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTAGAATCCTAATGAA	NA	False	NA	NA	False	NA	NA	NA	126954961	126941391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952767_126953302_126953453_126954788
8571	chr13	-	5083	3	NIC	ENSMUSG00000021660.15	novel	888	6	NA	NA	273	0	intron_retention	FALSE	canonical	3	6754	junction_2	148.5	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98452611	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_98446710_98447488_98449802_98450146
8572	chr9	+	3550	21	Antisense	novelGene_ENSMUSG00000102670.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCGTCCCGGAGACCGGA	NA	False	NA	NA	False	NA	NA	NA	107650765	107749904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_107651009_107651789_107651923_107655130_107655229_107656775_107656846_107659807_107660052_107660882_107660985_107664450_107664600_107664979_107665064_107665306_107665388_107665527_107665572_107666806_107666904_107668202_107668323_107668950_107669220_107673677_107673737_107677897_107677975_107710634_107710705_107724464_107724537_107728113_107728203_107729322_107730605_107737548_107737655_107749843
8573	chr5	+	2192	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	382	14	382	-14	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	1613	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864443	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
8574	chr16	-	3017	19	NIC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	0	-1335	intron_retention	FALSE	canonical	3	460	junction_18	363.820909680831	4	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTTGAGTTTGACAATGC	NA	False	NA	NA	False	NA	NA	NA	91443800	91419895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
8575	chr13	-	3442	28	NIC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	-13	72	combination_of_known_junctions	FALSE	canonical	2	8	junction_2	167.672356709118	130	6	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGACAGTGTTTTAGTGA	7249	False	NA	NA	False	NA	NA	NA	113063919	113004316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_113004530_113005544_113005650_113005870_113006002_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
8576	chr14	-	3231	9	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-9	-5	intron_retention	FALSE	canonical	3	775	junction_4	93.893556754444	59	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCATGTGTTTAAGATTT	NA	False	NA	NA	False	NA	NA	NA	30740984	30734395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
8577	chr5	+	3157	4	Intergenic	novelGene_768	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	54.2668304665833	3	38	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTGTGTGTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	104719727	104732485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104720411_104728353_104728481_104728722_104728755_104730170
8578	chr2	-	5013	23	NNC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	210	-19	intron_retention	FALSE	non_canonical	0	0	junction_11	132.606451858046	2	159	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATTCTTTTCTAGTCT	711	False	NA	NA	False	NA	NA	NA	119617771	119594465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602968_119603140_119603615_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119614452_119617701
8579	chr15	+	8057	18	FSM	ENSMUSG00000039704.9	ENSMUST00000227556.3	8098	18	36	5	36	-5	multi-exon	FALSE	canonical	2	16	junction_6	5.43473386468287	109	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACAGTCTTGTTGATTATT	68	False	NA	NA	False	NA	NA	NA	9140672	9202564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143_9172328_9175210_9175393_9175872_9176007_9177738_9177845_9178348_9178447_9182571_9182676_9183996_9184044_9186682_9186789_9194761_9194889_9196742
8580	chr11	-	5774	27	NNC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	896	-2	intron_retention	FALSE	non_canonical	0	0	junction_8	152.568274560496	2	191	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATAAAAACAGACTAGCAT	NA	False	NA	NA	False	NA	NA	NA	68898381	68877287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882516_68882595_68882681_68883237_68883480_68883598_68883737_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68898283
8581	chr11	-	3254	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9034	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	549.750715223626	1	87	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	390	False	NA	NA	False	NA	NA	NA	106615254	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571938_106573727_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590707_106605727_106605755_106605844_106606011_106615208
8582	chr7	+	3815	17	NNC	ENSMUSG00000030852.19	novel	2557	15	NA	NA	5080	0	intron_retention	FALSE	canonical	2	5	junction_2	101.953401580085	25	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGTGTGGCTGTGAGTTA	NA	False	NA	NA	False	NA	NA	NA	130203127	130366515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130203462_130203566_130203668_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
8584	chr8	-	7477	13	NIC	ENSMUSG00000065954.12	novel	7788	13	NA	NA	-4	-2	combination_of_known_splicesites	TRUE	canonical	3	6	junction_12	23.0523257443196	123	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCGGGGTGTGTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	25730921	25644569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25671838_25672947_25690106_25690223_25730809
8587	chr8	+	4224	4	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	6	0	intron_retention	FALSE	canonical	3	991	junction_1	49.9755495773239	83	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	NA	False	NA	NA	NA	86026557	86034700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86030081_86031837_86031951_86032845_86032948_86034214
8588	chr2	+	3368	7	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-30	-1	intron_retention	FALSE	canonical	3	1115	junction_3	98.3622838738959	2	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8633	False	NA	NA	False	NA	NA	NA	72306566	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72315657_72316063
8590	chr1	-	2958	21	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	-12	0	intron_retention	FALSE	canonical	2	3	junction_20	279.352443160965	26	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	NA	NA	NA	63215964	63182754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63214795_63214848_63215586
8591	chr9	-	3112	23	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	65	3	combination_of_known_splicesites	FALSE	canonical	3	15	junction_4	83.6485786534583	4	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61853953	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
8592	chrX	+	4857	8	FSM	ENSMUSG00000035246.17	ENSMUST00000045898.4	4888	8	31	0	31	0	multi-exon	FALSE	canonical	3	56	junction_6	4.01527694930148	148	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTGCCTTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	92718738	92793557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_92719083_92745690_92745791_92750163_92750281_92761390_92761543_92763784_92763864_92775282_92775426_92778370_92778560_92789824
8594	chr5	-	2995	14	FSM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	4	11	4	-11	multi-exon	FALSE	canonical	3	749	junction_10	48.0023421519305	1493	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCCCAAGTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	52347852	52307555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
8595	chr18	-	4759	17	NNC	ENSMUSG00000041225.17	novel	2500	17	NA	NA	49	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	47.8134395332526	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTATAATAACAAAACCA	13	False	NA	NA	False	NA	NA	NA	6136049	6024464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061839_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
8596	chr2	+	2998	16	NNC	ENSMUSG00000027067.17	novel	2721	17	NA	NA	6	0	intron_retention	TRUE	non_canonical	0	0	junction_5	534.897705692926	3	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867804	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870800_84870902_84871131_84871260_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
8597	chr4	+	2450	14	ISM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	59	2922	-48	-2922	intron_retention	FALSE	canonical	3	1027	junction_12	88.7889592795232	27	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTCCTGTAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	124608627	124623331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111
8598	chr6	+	2561	17	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	271.152517045297	1	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5422	False	NA	NA	False	NA	NA	NA	125108856	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118339_125118389_125118466_125120963
8599	chr2	+	3697	19	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	58	-1	intron_retention	FALSE	canonical	3	25	junction_13	159.424243784228	18	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTCTTAGTCTGTTTTGT	551	False	NA	NA	False	NA	NA	NA	31462720	31507529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31502248_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
8600	chr1	+	2980	22	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	2473	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	329.760154714284	4	22	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCTTGCCGTTTCCCT	1781	False	NA	NA	False	NA	NA	NA	171929775	171949894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171929860_171931675_171931828_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940763_171944501_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266_171949540_171949624
8601	chr2	-	3368	9	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	40	1260	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	196.455744062117	20	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAATTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	121337106	121321131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121321258_121322266_121323359_121324399_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
8602	chr5	+	3878	30	Genic_Genomic	ENSMUSG00000106767.2_ENSMUSG00000106696.2	novel	2823	1	NA	NA	-6829	79776	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	12	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGCTGCTCTTTCAGAGG	50	False	NA	NA	False	NA	NA	NA	65767462	65863982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_65767535_65772602_65772940_65776276_65776395_65776961_65777109_65777889_65777955_65780321_65780443_65781262_65781394_65784425_65784543_65784902_65785107_65785340_65785466_65787261_65787395_65789051_65789125_65791514_65791674_65792657_65792784_65795084_65795244_65795897_65796009_65801364_65801479_65803675_65803816_65804430_65804480_65805266_65805351_65807736_65807850_65808487_65808640_65809730_65809879_65811349_65811443_65812131_65812254_65813616_65813752_65815689_65815771_65816947_65817077_65854105_65854287_65863843
8603	chr12	+	2326	8	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	8	-68	intron_retention	FALSE	canonical	3	5416	junction_7	322.460818692499	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAATTAACAGTCTTGAAC	NA	False	NA	NA	False	NA	NA	NA	24758247	24764077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762974_24763078
8605	chr4	+	2493	6	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	2	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	43.2730863239497	5	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTTGTTTTCAATTT	NA	False	NA	NA	False	NA	NA	NA	147637735	147669659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661481_147661587_147665698_147665826_147667290_147667852_147668187
8606	chr1	+	1996	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	174	345	-5	-344	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACTTGGGACACCTGG	NA	False	NA	NA	False	NA	NA	NA	165957980	165993734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
8607	chr1	+	2704	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-54	6857	-16	677	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	81	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTAGGTTTTCTTAGCTA	NA	False	NA	NA	False	NA	NA	NA	59724113	59751346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
8609	chr16	-	2771	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	-18	-28	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	298.399463806489	92	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTAATACTGGTTCGGT	6248	False	NA	NA	False	NA	NA	NA	38370602	38345529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355024_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
8610	chr8	-	1929	16	FSM	ENSMUSG00000058355.9	ENSMUST00000211509.2	3030	16	9	1092	9	-1092	multi-exon	FALSE	canonical	3	1167	junction_8	95.1564793146297	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCAGTTTCTTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	80438290	80413926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
8612	chr1	-	4647	28	FSM	ENSMUSG00000042699.12	ENSMUST00000042141.12	4616	28	-37	6	-37	-6	multi-exon	FALSE	canonical	3	83	junction_24	29.9642219210858	573	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGATTGTGTCATTGA	NA	False	NA	NA	False	NA	NA	NA	153363443	153331509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
8613	chr6	+	3441	24	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-5	-44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	148.684960205477	2	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGACCCAATAAAATAGTA	-12	True	NA	NA	False	NA	NA	NA	28480341	28888787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724909_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
8614	chr18	+	5725	10	NIC	ENSMUSG00000024442.7	novel	2394	13	NA	NA	56	-3	intron_retention	FALSE	canonical	3	351	junction_5	22.2283324932866	3	104	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGGTCTTGCCCTTGAGT	4052	False	NA	NA	False	NA	NA	NA	38383396	38395679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
8615	chr17	-	6486	32	ISM	ENSMUSG00000023830.15	ENSMUST00000024599.14	8887	48	54227	6	-14158	-6	3prime_fragment	TRUE	canonical	3	128	junction_23	35.0347233731255	260	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGGTGTAAGTGACTCAC	6019	False	NA	NA	False	NA	NA	NA	12934324	12901298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_12903014_12904024_12904095_12904477_12904622_12905508_12905696_12907202_12907391_12907876_12908024_12909018_12909134_12910043_12910181_12910769_12911005_12911525_12911673_12911960_12912169_12912889_12913052_12914172_12914323_12916211_12916431_12916972_12917230_12917411_12917532_12918066_12918194_12919228_12919420_12920106_12920244_12920819_12920918_12921083_12921215_12922247_12922464_12923158_12923247_12923519_12923696_12923783_12923928_12924574_12924740_12928265_12928462_12929523_12929629_12930905_12931008_12932847_12933028_12933759_12933929_12934264
8618	chr5	-	3300	10	NNC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	-19	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	412.371940466311	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCGTGTGCTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	114046785	113980500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982399_113983231_113983468_113985448_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
8619	chr15	+	1517	10	Antisense	novelGene_ENSMUSG00000022283.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCTTAAGTTCCGTCTGC	NA	False	NA	NA	False	NA	NA	NA	36595907	36601154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36596346_36596804_36596898_36597205_36597337_36597698_36597786_36598216_36598372_36598445_36598557_36599195_36599291_36599451_36599718_36600832_36600932_36601112
8621	chr19	-	2280	19	NIC	ENSMUSG00000025159.9	novel	2810	26	NA	NA	-2	1052	combination_of_known_junctions	FALSE	canonical	3	137	junction_3	31.7270866089428	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	41969558	41940483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
8622	chr11	-	2057	12	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	1506	1194	-976	-1	3prime_fragment	FALSE	canonical	3	3830	junction_8	164.878918759312	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	NA	False	NA	NA	False	NA	NA	NA	106677852	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734
8626	chr2	+	3720	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	-4	4	-4	-4	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	41	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	103858200	103887845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
8627	chr8	+	3249	5	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	13	1756	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1212.84734715462	13504	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTTGGTTTCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	112667347	112682000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946_112680594_112680764
8631	chr11	-	2043	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	11	0	11	0	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	6920	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9677	False	NA	NA	False	NA	NA	NA	106890356	106879454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
8632	chr8	-	4285	8	NIC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	-16	0	intron_retention	FALSE	canonical	3	544	junction_2	46.3676523416214	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	110419908	110397959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110399274_110402007_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
8633	chr12	+	3955	1	Intergenic	novelGene_4376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	161	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTCTATATTAATAAAG	NA	False	NA	NA	False	NA	NA	NA	68605039	68608994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605000_68609000
8634	chr10	+	6430	29	NNC	ENSMUSG00000001150.8	novel	6427	29	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	65.4890550132662	222	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCCGCCTTAGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	76304758	76351689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_76305049_76305782_76307087_76307256_76307484_76312347_76312427_76312616_76312759_76313553_76313745_76316834_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338482_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
8635	chr12	-	3062	9	NIC	ENSMUSG00000041645.15	novel	3063	9	NA	NA	-8	1	combination_of_known_splicesites	FALSE	canonical	3	11	junction_8	276.698278816475	844	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGGGTGTTGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	103392097	103374239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103391845
8636	chr9	+	4827	35	FSM	ENSMUSG00000036768.7	ENSMUST00000040717.7	4858	35	31	0	0	0	multi-exon	FALSE	canonical	3	157	junction_12	27.7337969778696	330	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTATAAATACTATGCCT	NA	False	NA	NA	False	NA	NA	NA	122780141	122847798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910_122817089_122820150_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825462_122826846_122827013_122828239_122828391_122828579_122828666_122830109_122830180_122831099_122831187_122832634_122832740_122833635_122833759_122836378_122836526_122838381_122838484_122838824_122838990_122840592_122840703_122843004_122843078_122843533_122843572_122846309_122846476_122846651_122846784_122847132
8638	chr19	+	2372	20	ISM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	10	1926	5	-1926	5prime_fragment	FALSE	canonical	3	708	junction_5	138.293537423391	2	72	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGTATCTGCCAGTAAC	1909	False	NA	NA	False	NA	NA	NA	8875480	8892110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065
8639	chr16	+	6208	1	Antisense	novelGene_ENSMUSG00000043140.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATTACTATGGCTT	NA	False	NA	NA	False	NA	NA	NA	8449248	8455456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_8449200_8455500
8640	chr18	+	2755	20	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	336.453731697848	85	30	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6286	False	NA	NA	False	NA	NA	NA	34758096	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761476_34761557_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762533_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
8641	chr11	+	4523	1	FSM	ENSMUSG00000064437.4	ENSMUST00000082503.4	72	1	-202	-4249	-202	4249	mono-exon	FALSE	NA	NA	NA	NA	NA	491	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGGACTGAGCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	62493702	62498225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62493700_62498200
8642	chr11	-	3117	27	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	6	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	13	junction_6	374.979914649482	4	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8475	False	NA	NA	False	NA	NA	NA	102771784	102729298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732069_102732563_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
8643	chr10	-	3268	12	Antisense	novelGene_ENSMUSG00000037608.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGAAAAAAGCACGCGTGC	NA	False	NA	NA	False	NA	NA	NA	20216010	20188710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20189039_20193750_20193856_20197746_20197861_20198706_20199613_20200883_20201550_20201673_20201844_20203845_20203952_20205050_20205139_20207829_20208005_20209134_20209319_20215454_20215666_20215795
8646	chrX	-	2805	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3364	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	354.813485334196	5	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCATTCTGCTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	23227928	23085530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085947_23086349_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
8647	SIRV7	-	2344	6	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1999.28881355346	4	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	147918	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1491_1639_2676_2993_3115_3812_3897_114680_114989_147608
8648	chrX	-	2616	9	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-4	-10	intron_retention	FALSE	non_canonical	0	0	junction_2	453.203872445945	1	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921413	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907560_158910590_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
8649	chr14	+	4830	26	NNC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	-66	-3	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_19	53.9251332868079	4	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGGGTTTTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	57124043	57197806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_57124156_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57182142_57182221_57183947_57184074_57185409_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
8650	chr8	-	2856	17	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	4516	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	627.734505483807	1	56	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	86021576	85987020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987678_85987730_85987773_85988657_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007966_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014451_86016334_86016432_86021487
8651	chr1	+	1936	5	NNC	ENSMUSG00000037461.11	novel	4002	18	NA	NA	39863	-80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	117.615900285633	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTCTTTGCTTGTGTTTT	8293	False	NA	NA	False	NA	NA	NA	191347750	191354778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191347946_191349923_191350023_191351707_191351894_191353276_191353910_191353955
8652	chr5	-	4347	16	NIC	ENSMUSG00000045078.13	novel	4474	17	NA	NA	-1	-1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_15	54.0106985286763	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGCTCTGTTTGTCC	6129	False	NA	NA	False	NA	NA	NA	143098750	142976648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143098653
8653	chr4	+	2509	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3151	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	158.863323506578	1	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147595207	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147595337_147596801_147597216_147597970_147598436_147599020
8655	chr4	-	4254	16	NIC	ENSMUSG00000037622.15	novel	4191	16	NA	NA	297	-7	combination_of_known_junctions	FALSE	canonical	3	428	junction_6	32.7350305059003	298	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTGGTGGCATTTG	8684	False	NA	NA	False	NA	NA	NA	133080495	133019776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133021697_133022508_133022702_133023726_133023905_133024730_133024967_133027871_133028046_133029029_133029139_133029693_133029767_133030861_133030978_133031461_133031557_133033134_133033318_133036059_133036248_133040617_133040730_133041070_133041118_133049482_133049567_133051138_133051286_133080096
8656	chr2	-	2244	10	ISM	ENSMUSG00000027244.15	ENSMUST00000028678.9	3604	17	-18	8896	-18	-4128	5prime_fragment	FALSE	canonical	3	248	junction_7	17.7826382244655	2	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGCTTTGGAATCCTAAA	NA	False	NA	NA	False	NA	NA	NA	91540882	91513859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
8657	chr16	-	3061	17	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	-18	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	341.383742107031	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8092	False	NA	NA	False	NA	NA	NA	4867745	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832601_4832841_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
8658	chr2	+	4998	31	NNC	ENSMUSG00000038685.19	novel	3505	28	NA	NA	443	-1	intron_retention	TRUE	non_canonical	0	0	junction_22	86.460395557735	29	107	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	NA	False	NA	NA	False	NA	NA	NA	180962198	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180962223_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991918_180991997_180992427_180992506_180992819_180992967_180993037_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180997346_180997443_180997606_180997716
8659	chr16	-	2387	19	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	364.288470180121	941	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCAGACGTTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	3895677	3857838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3860347_3860433_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
8660	chr17	-	3173	13	NIC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	207.733185574402	300	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATCGAACTGTGGTGGA	NA	False	NA	NA	False	NA	NA	NA	29226925	29189863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
8664	chrX	-	1168	6	Antisense	novelGene_ENSMUSG00000031221.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	880	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGGAGTTCTAGTCCT	NA	False	NA	NA	False	NA	NA	NA	99559610	99538125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_99538160_99538507_99538803_99546598_99546795_99548793_99548876_99549545_99549657_99559160
8666	chr11	-	3378	14	NIC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	142.103221088711	786	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	100277608	100261444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100277321
8667	chr12	+	2615	14	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	94.6453986165727	11	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	85157631	85180862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85176558_85176640_85177233_85177318_85177670_85177839_85179392
8668	chr10	+	2826	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	90	6	3	-6	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	509	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41395499	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
8670	chrX	+	3590	11	NIC	ENSMUSG00000044150.13	novel	578	4	NA	NA	6	-4	intron_retention	FALSE	canonical	3	25	junction_1	226.307666684096	3	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTTGGTGAGAGCATTC	NA	False	NA	NA	False	NA	NA	NA	158309689	158376073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158350914_158351011_158357940_158358094_158375066
8671	chr17	+	3897	14	NIC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-69	-2	intron_retention	FALSE	canonical	3	1213	junction_1	78.2487310141541	3	109	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGGTTCTCTAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	21165679	21186165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
8672	chr12	-	3629	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	74	406	74	-406	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	7	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAGTTATTTTAAAATC	2752	False	NA	NA	False	NA	NA	NA	59058729	59005574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
8673	chr6	-	4563	32	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	187.807360288579	1	154	16	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3410	False	NA	NA	False	NA	NA	NA	125168649	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150117_125150311_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153193_125153667_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161023_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
8674	chr11	+	3950	21	FSM	ENSMUSG00000019302.17	ENSMUST00000103110.10	2716	21	61	-1295	26	0	multi-exon	FALSE	canonical	3	25	junction_5	41.6171839508634	269	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	100900338	100954545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917485_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945851_100945970_100946259_100946432_100953137
8675	chr19	+	4631	5	Antisense	novelGene_ENSMUSG00000037071.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	155	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGAGGGAGGAAGGGAGG	4534	False	NA	NA	False	NA	NA	NA	44382904	44396163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_44386563_44388610_44388842_44391605_44391734_44394924_44395200_44395824
8676	chr2	+	4942	24	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	45	1	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	73.2903437033231	2	59	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTGTGCCCTGCCTTCT	4738	False	NA	NA	False	NA	NA	NA	18069542	18217200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18097594_18097646_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
8679	chr6	-	2494	6	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	4	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	902.960331354595	9	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAATAAAAGTTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	148847904	148822565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824392_148827482_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
8680	chr2	-	3513	15	FSM	ENSMUSG00000074643.13	ENSMUST00000142975.8	3466	15	-51	4	0	-2	multi-exon	FALSE	canonical	3	257	junction_14	29.7565804761342	418	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTCAGTGGCCGCTCTT	NA	False	NA	NA	False	NA	NA	NA	155953859	155913768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920895_155920982_155921163_155921258_155921385_155953705
8681	chr2	+	3291	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	-23	-382	-23	382	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	545	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTGAGTATAGTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	112209532	112244967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
8682	chr2	-	3944	33	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.173992636338438	1	71	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGCCTAAATGCTACACTT	NA	False	NA	NA	False	NA	NA	NA	180997824	180961538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964687_180965154_180965236_180965474_180965536_180970393_180970471_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981033_180982286_180982387_180983315_180983374_180988623_180988698_180988803_180988886_180990965_180991101_180991255_180991368_180991459_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993162_180993370_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995898_180996136_180996233_180996798_180996923_180997123_180997345_180997441_180997604_180997714
8683	chr10	-	4495	19	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	169	-8	intron_retention	FALSE	canonical	0	0	junction_1	90.3112758364639	1	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATACTGCTTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	61219140	61155442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61156821_61156868_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178937_61179406_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
8684	chr11	+	3233	13	Antisense	novelGene_ENSMUSG00000078622.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTAGTTATGTTGCGTTC	4815	False	NA	NA	False	NA	NA	NA	106090179	106107649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106091845_106092837_106093004_106093208_106093320_106093553_106093612_106094362_106094450_106095746_106095861_106096188_106096288_106098831_106098898_106099020_106099142_106101112_106101287_106102496_106102678_106103909_106104190_106107538
8686	chr9	+	4406	26	NNC	ENSMUSG00000032115.15	novel	681	7	NA	NA	-397	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	225.840772226806	1	173	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGTGTTTGCTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	44291428	44303662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291516_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299899_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
8687	chr10	-	4289	29	NNC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-16	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	34.9300138469331	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATATGTGCCTTTTGC	NA	False	NA	NA	False	NA	NA	NA	79938548	79892853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79922096_79922267_79938443
8688	chr1	-	2339	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2655.17674335656	3	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACTTCCTAGAGGTTAC	NA	False	NA	NA	False	NA	NA	NA	86287098	86278207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280308_86280883_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285187_86285828_86285946_86286927
8689	chr11	-	3708	15	FSM	ENSMUSG00000020451.18	ENSMUST00000101642.10	3693	15	-15	0	-15	0	multi-exon	FALSE	canonical	3	120	junction_14	38.572023804931	421	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	9799	False	NA	NA	False	NA	NA	NA	3321391	3294255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
8693	chrX	-	2558	12	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	560.389121006242	3	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	NA	False	NA	NA	NA	93585629	93579079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580526_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93585497
8694	chr15	-	2358	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	408	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1570.89362485569	3	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTAGATGGTTATGCTT	785	False	NA	NA	False	NA	NA	NA	36608809	36595910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599242_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
8696	chrX	-	2782	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-7	-6	intron_retention	FALSE	canonical	0	0	junction_1	415.306080494697	2	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTACAGTTCTTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	158921416	158905210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158905382_158905448_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
8697	chr15	-	4448	36	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	165.714862067963	1	135	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAGACGAGTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	76491697	76480013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483651_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485729_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487872_76491534
8698	chr9	+	3130	18	Intergenic	novelGene_1038	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	395	22	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGCAGGGGCGCACGCGC	NA	False	NA	NA	False	NA	NA	NA	53009934	53159396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010566_53028454_53028589_53060801_53060855_53068465_53068633_53071197_53071320_53115358_53115829_53118763_53118857_53120989_53121077_53124535_53124634_53134955_53135047_53136773_53136934_53140422_53140506_53145127_53145318_53146562_53146683_53147698_53147857_53149345_53149477_53151774_53151838_53159117
8701	chr4	+	3620	32	NNC	ENSMUSG00000053510.13	novel	4311	31	NA	NA	18	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	133.811848586216	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTGTGCATTTTATGG	9958	False	NA	NA	False	NA	NA	NA	108857869	108918365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108857947_108858010_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
8702	chr18	+	5022	7	ISM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	35	-1007	35	1007	intron_retention	FALSE	canonical	3	1621	junction_6	155.307669553767	6	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTTTGAGTGGTAATGT	NA	False	NA	NA	False	NA	NA	NA	67908079	67926670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409
8703	chr2	-	3403	15	NNC	ENSMUSG00000045624.16	novel	3396	14	NA	NA	23	0	at_least_one_novel_splicesite	TRUE	canonical	3	9	junction_13	136.877291239792	432	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCGTTTGTATAGCATT	7000	False	NA	NA	False	NA	NA	NA	140012461	139961802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140011045_140011076_140012396
8704	chr15	-	2556	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	139	349	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_18	758.336849808697	2	20	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTCTGTCCTCACGGTTA	131	False	NA	NA	False	NA	NA	NA	11399548	11383741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399462
8705	chr14	-	2804	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	-33	0	-10	0	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	1090	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3434	False	NA	NA	False	NA	NA	NA	65830534	65767897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
8706	chr15	+	3426	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	99	2	99	-2	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	651	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAATGTGTGTGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	4055963	4184824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
8707	chr1	+	6166	35	ISM	ENSMUSG00000064302.14	ENSMUST00000178710.8	7566	37	70595	605	65	-413	3prime_fragment	FALSE	canonical	0	0	junction_23	61.1648249662238	2	39	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATATTCAAAGCACCTAGA	NA	False	NA	NA	False	NA	NA	NA	118387382	118536557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_118387610_118388916_118389021_118390195_118390288_118392257_118392334_118395609_118395708_118399501_118399570_118425363_118425517_118427377_118427452_118429031_118429125_118430582_118430729_118431549_118431686_118432625_118432697_118433211_118433272_118434669_118434748_118436544_118436713_118437301_118437352_118437935_118438107_118449556_118449665_118453026_118453186_118466995_118467100_118469404_118469429_118470831_118471077_118473122_118473187_118475594_118475759_118478816_118478896_118479742_118479887_118487715_118487860_118488740_118488848_118498578_118498730_118506550_118506795_118509002_118509194_118518150_118518280_118528107_118528315_118530094_118530212_118534637
8710	chr9	+	2909	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	242.341152871319	1120	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824661	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77829157_77829304_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
8711	chr14	+	2419	14	NIC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	1	-17	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	471.129060572553	103	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACCAAAGGACTAACCA	NA	False	NA	NA	False	NA	NA	NA	45567293	45587145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_45567641_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
8712	chr19	+	3875	10	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	160.037804175864	6	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGAGCTTGTGTGTGTG	3941	False	NA	NA	False	NA	NA	NA	53933319	54021558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498_54020384_54020460
8713	chr4	-	4099	12	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-4	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	262.396425847458	7	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATAAATGAAGTGGCAGAT	6783	False	NA	NA	False	NA	NA	NA	126096444	126057899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126059197_126059341_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
8714	chr3	+	3115	6	NNC	ENSMUSG00000015749.13	novel	1381	7	NA	NA	-16	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	660.715672585417	2	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836620	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95852493
8715	chr1	-	2392	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2653.1988865068	1	61	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTTAATACTTCCTA	NA	False	NA	NA	False	NA	NA	NA	86287097	86278215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278415_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282871_86283783_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
8717	chr10	+	2877	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	47	2	-29	-2	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	1	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173649	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
8718	chr12	+	3446	3	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	21	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	323.5	2	77	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516911	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86561098_86561325_86565594
8719	chr2	-	3385	18	NNC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.418803945505	4	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTCAGTGGCCGCTCT	NA	False	NA	NA	False	NA	NA	NA	155953847	155913769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155915473_155915517_155915582_155915718_155915913_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
8720	chr11	-	2444	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	-10	-16	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_12	132.513346430646	6	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATACCTACTTTATAAG	NA	False	NA	NA	False	NA	NA	NA	57409453	57373834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57405030_57405118_57409398
8721	chr9	+	4579	17	NIC	ENSMUSG00000032178.15	novel	4679	18	NA	NA	9	3	intron_retention	FALSE	canonical	3	922	junction_16	380.802888439347	2	117	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCCGTACTTGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	21279307	21313093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
8722	chr10	-	4387	18	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	188	-4	intron_retention	FALSE	canonical	2	6	junction_14	91.7531666953022	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTTTGCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	61219121	61155438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61177132_61178097_61178281_61178572_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186082_61186674_61186855_61188711_61188815_61191592_61191816_61219070
8723	chr6	-	2590	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	2	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	833.564967807282	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTTGTCTCATGACT	NA	False	NA	NA	False	NA	NA	NA	148847963	148822560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824385_148824461_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
8724	chr19	+	3277	11	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	243.913283771098	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10160347	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164257_10170310_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
8726	chrX	-	2960	6	NNC	ENSMUSG00000016534.16	novel	3604	9	NA	NA	73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	382.107105403707	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	NA	False	NA	NA	NA	37545218	37508383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520893_37545121
8727	chr9	+	3998	16	NNC	ENSMUSG00000032264.10	novel	2863	16	NA	NA	-9	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	77.3920466772193	252	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGAGTTGAGAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	48966903	48990061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48983299_48983710_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
8728	chrX	+	3366	15	FSM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	14	-1	-8	1	multi-exon	FALSE	canonical	3	290	junction_14	28.3207755284104	383	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGGGCTATGACTGTG	NA	False	NA	NA	False	NA	NA	NA	70258625	70358902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
8729	chrX	+	2394	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-34	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1430.16997198247	3	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473306	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483098_100483275_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
8731	chr15	-	2744	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	362	182	-339	-182	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	2	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACCCTACCGAGTATTT	101	False	NA	NA	False	NA	NA	NA	36794420	36771195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
8732	chr10	+	4274	29	NNC	ENSMUSG00000039994.16	novel	4457	29	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_10	76.2979859043555	28	19	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTTAAAAAAAGAGACTT	6606	False	NA	NA	False	NA	NA	NA	128067948	128088795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128080091_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060
8733	chr5	-	2495	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	13	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963464	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937889_135938924_135940506_135963176
8735	chr10	+	2556	9	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	509.862711300797	3	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173674	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186358_128188937_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
8737	chrX	+	2353	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	759	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1118.66422576214	84	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100474099	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100474159_100480814_100480988_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
8738	chr12	-	2682	11	NNC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	592.004763494349	1492	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860063	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826150_108826257_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
8740	chr10	+	2436	13	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	85	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	288.649104546603	2	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7075	False	NA	NA	False	NA	NA	NA	60113534	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136038_60136552_60136661_60137472
8741	chr11	-	1757	14	Antisense	novelGene_ENSMUSG00000007739.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGCGGTGGGCGCCCCGC	7756	False	NA	NA	False	NA	NA	NA	22953329	22940798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22940879_22943264_22943319_22944296_22944386_22945927_22946037_22946312_22946456_22947030_22947154_22947601_22947736_22949032_22949175_22950857_22950953_22951359_22951468_22951554_22951694_22952167_22952400_22952814_22952930_22953135
8742	chr1	+	3196	2	ISM	ENSMUSG00000053332.14	ENSMUST00000161005.8	430	8	559	0	0	0	intron_retention	FALSE	canonical	3	6198	junction_1	0	12	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_160863375_160863552
8743	chr5	+	2178	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-95	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1084.55647616895	3	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	661	False	NA	NA	False	NA	NA	NA	77099528	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114281_77114451
8744	chr9	-	190	1	Antisense	novelGene_ENSMUSG00000032342.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTCTAAGTCCTCTATG	NA	False	NA	NA	False	NA	NA	NA	78381416	78381226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_78381200_78381400
8745	chr11	-	2590	14	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	2	-491	intron_retention	FALSE	canonical	2	14	junction_2	203.705873357242	1	29	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATGAGGATGGGTTTGAG	NA	False	NA	NA	False	NA	NA	NA	106146628	106141215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106141850_106141979_106142097_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106146252_106146410_106146504_106146586
8746	chr10	+	2327	12	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	48	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	291.951541320369	50	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7038	False	NA	NA	False	NA	NA	NA	60113497	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136053_60137525
8747	chr16	+	4575	30	ISM	ENSMUSG00000045983.17	ENSMUST00000073840.12	5394	32	-6	3878	-3	-275	5prime_fragment	FALSE	canonical	3	236	junction_1	311.196077756355	9	24	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTAGTTCGAGCCCTCAT	NA	False	NA	NA	False	NA	NA	NA	20491492	20507753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20491627_20492617_20492712_20492977_20493065_20494093_20494271_20494479_20494580_20496435_20496549_20497331_20497425_20497633_20497701_20497962_20498776_20499462_20499552_20499639_20499827_20499932_20500067_20500169_20500329_20500486_20500673_20500791_20500990_20501408_20501556_20502167_20502405_20502561_20502667_20502771_20502932_20503157_20503259_20504260_20504364_20504608_20504706_20504900_20505128_20505262_20505382_20505509_20505683_20505899_20506026_20506130_20506213_20507288_20507388_20507480_20507616_20507720
8748	chr2	+	3469	19	NNC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	127.20423210989	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATGCAAGGGTGCGGA	NA	False	NA	NA	False	NA	NA	NA	153003465	153052380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526_153051215_153051392
8749	chrUn_JH584304v1	-	2682	4	Intergenic	novelGene_4643	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_3	398.479610519786	24	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	59725	52668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_59591
8750	chr13	+	634	1	Intergenic	novelGene_1404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGAAAATATTGGCAACA	NA	False	NA	NA	False	NA	NA	NA	62520181	62520815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62520200_62520800
8751	chr16	-	2682	12	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	0	56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	288.946075783603	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAATATAATATGTTTTGTA	6266	False	NA	NA	False	NA	NA	NA	38370584	38345442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38345761_38345856_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
8753	chr2	+	2780	8	ISM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	43	8	43	-8	intron_retention	FALSE	canonical	3	1115	junction_3	92.5429850482069	45	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAACTTGTGTGTTTAT	8612	False	NA	NA	False	NA	NA	NA	72306545	72317229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519
8756	chr5	+	1963	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1430.73311081243	4	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	756	False	NA	NA	False	NA	NA	NA	77099623	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109086_77109300_77109354_77110273_77110358_77112288_77112470_77114093_77114227_77114405
8757	chr15	-	4407	21	NIC	ENSMUSG00000022360.9	novel	5684	28	NA	NA	-2	883	intron_retention	FALSE	canonical	3	283	junction_18	29.1092339301466	26	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGATTTCACTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	57998480	57965266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
8758	chr1	-	2422	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2010.13947233142	2	57	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287133	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278744_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
8759	chr15	-	3068	18	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.52352738196704	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	7000	False	NA	NA	False	NA	NA	NA	98560769	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543415_98543535_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
8760	chr11	-	3594	10	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.25707872210942	8	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATGGCCGACACCCTC	NA	False	NA	NA	False	NA	NA	NA	80286675	80274152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274319_80276725_80276854_80278625_80278765_80279801_80279970_80280078_80280155_80280597_80280648_80282156_80282225_80282657_80282817_80283907_80286087_80286214
8761	chr19	-	3741	17	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-18200	-6562	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	76	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCCCCTGAGACACGTTG	4673	False	NA	NA	False	NA	NA	NA	10601218	10582957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887
8762	chr15	-	3583	15	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	-8378	-370	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	266.411987228007	3	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTACATTTTGGAACATA	1986	False	NA	NA	False	NA	NA	NA	51863521	51826005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51856805_51856938_51863455
8763	chrX	-	2435	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-14	-10	intron_retention	FALSE	canonical	2	21	junction_1	429.262495450045	9	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921423	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906527_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
8764	chr2	+	2506	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	1993	junction_1	208.815670808012	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119891_130120075_130120211_130120816
8765	chr6	+	2919	24	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	254.241880573263	16	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTATACTCAAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	87864909	87889512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869656_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
8766	chr11	-	2354	11	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	0	intron_retention	FALSE	non_canonical	0	0	junction_8	587.593405340802	1	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCATTGTCACTGCTGCT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458855_120459092_120459134_120462346_120462554_120463482
8767	chr3	-	3756	25	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	30	-3	intron_retention	FALSE	canonical	3	562	junction_11	52.279430839374	4	45	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGCTGGTTCCCTGAA	NA	False	NA	NA	False	NA	NA	NA	100069683	100045498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100051144_100051634_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
8768	chr8	+	2437	9	ISM	ENSMUSG00000031864.17	ENSMUST00000110241.8	2322	16	10	12780	10	-4881	5prime_fragment	FALSE	canonical	3	438	junction_4	90.4087074069749	35	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGGTCAGAAGCTAGGGA	NA	False	NA	NA	False	NA	NA	NA	69246596	69262383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027
8769	chr2	-	4060	6	FSM	ENSMUSG00000027109.17	ENSMUST00000066003.7	3808	6	-34	-218	-14	-3	multi-exon	FALSE	canonical	2	7	junction_4	184.227685215876	387	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGCTTGAAAAAGTCTAA	2871	False	NA	NA	False	NA	NA	NA	72810804	72766773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809830_72809977_72810593
8771	chr10	+	2715	13	NIC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	87	-1	intron_retention	FALSE	canonical	3	864	junction_6	76.9474477953767	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATCTGGCCTTGTGTCTC	7077	False	NA	NA	False	NA	NA	NA	60113536	60138375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136661_60137472
8774	chr2	+	1369	7	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	19870	1014	-188	975	3prime_fragment	FALSE	canonical	3	2736	junction_1	195.581753295706	57	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	NA	NA	NA	162916476	162925594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
8775	chr13	+	4516	16	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	42	199	intron_retention	FALSE	canonical	3	9	junction_7	59.6852485032013	232	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTTGTAGCCATTTTTA	NA	False	NA	NA	False	NA	NA	NA	35059528	35086857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077299_35077406_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375
8776	chr10	-	2761	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1163.24474005237	2	57	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	86541326	86526703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534191_86534303_86534455_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
8777	chr10	-	2333	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	3	-1	intron_retention	FALSE	canonical	3	1501	junction_10	185.884614747967	4082	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGCTGCTTCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	127358252	127352992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
8778	chr1	+	4787	31	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	831.697811040097	2	237	19	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATCTATTTGGTTCATC	NA	False	NA	NA	False	NA	NA	NA	185095264	185160552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105118_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118532_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152474_185160048_185160114_185160193
8780	chr17	-	2279	8	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	-9	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1116.59506116239	290	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCGTTCGCCCAGTCCCC	NA	False	NA	NA	False	NA	NA	NA	47093572	47084827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47085850_47086174_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092812_47093540
8781	chr14	+	1224	8	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-20	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	430.220541450213	8	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTTCTGTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	8348809	8357572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349025_8349570_8349718_8352848_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
8783	chr6	+	3330	23	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-34	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	238.180868318717	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTACTGTCGTGGTG	-6	True	NA	NA	False	NA	NA	NA	28480393	28888817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512988_28520167_28520265_28525976_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888115_28888292
8784	chr6	-	2785	16	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_13	226.693174920542	1	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	16	False	6217138	NA	False	NA	NA	NA	6217122	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6152407_6152524_6191263_6191318_6216995
8785	chr11	-	3278	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.083078726175	191	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1351	False	NA	NA	False	NA	NA	NA	20062898	20012303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20014255_20014592_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
8786	chr2	+	4373	6	FSM	ENSMUSG00000000826.17	ENSMUST00000116365.9	3728	6	-8	-637	-8	637	multi-exon	FALSE	canonical	3	78	junction_5	67.7642973843897	217	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGTTTCTTGAAGTGT	7038	False	NA	NA	False	NA	NA	NA	181162310	181194679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
8787	chr2	+	4382	4	Antisense	novelGene_ENSMUSG00000095362.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	202	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTACAGAAAGGAACTTGC	6019	False	NA	NA	False	NA	NA	NA	177470788	177482121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177474887_177476040_177476103_177476310_177476442_177482030
8789	chr18	-	3457	29	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	55	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	730.957789164885	1	84	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTTTGGGCCATGTTA	NA	False	NA	NA	False	NA	NA	NA	42395101	42335417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42352782_42352947_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368545_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383977_42384357_42384446_42390134_42390260_42395025
8790	chr5	+	3269	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	8	426	8	-7	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATCATTCCTATACTCAG	NA	False	NA	NA	False	NA	NA	NA	45827268	45857462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
8791	chr2	+	1423	17	NNC	ENSMUSG00000042410.17	novel	7359	20	NA	NA	-18	-6730	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	185.337435084632	1	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTGCAGGTGAGTTTCCA	797	False	NA	NA	False	NA	NA	NA	75662830	75735283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75662856_75681837_75681928_75683065_75683127_75684513_75684635_75684874_75684950_75687360_75687433_75689242_75689323_75692277_75692359_75697090_75697217_75698648_75698758_75707814_75707943_75718459_75718512_75722135_75722213_75724388_75724502_75730525_75730596_75733261_75733324_75735202
8794	chr2	+	2283	6	NNC	ENSMUSG00000078906.10	novel	1281	4	NA	NA	-8	2864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	416.330926067233	425	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGGATCTAAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	174852025	174863905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749_174858811_174859951_174861638_174863640
8796	chr10	-	4276	13	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	244.709805461262	1	131	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTAGTTCTTGGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	62438054	62416031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423807_62426411_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434653_62437906
8797	chr18	-	4214	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-1	85	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	70.7325453417417	28	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACTATTCTTGCCATG	NA	False	NA	NA	False	NA	NA	NA	62681767	62637140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647991_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
8798	chr15	+	4016	5	Antisense	novelGene_ENSMUSG00000115206.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCGCGCCCGCCCTGTCCA	NA	False	NA	NA	False	NA	NA	NA	4013016	4025205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_4015961_4018071_4018157_4019038_4019169_4021199_4021949_4025097
8799	chr12	+	2081	15	ISM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	280	27850	-3	-3708	5prime_fragment	FALSE	canonical	3	606	junction_10	43.4090651681824	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAACGTAGGACCTAGA	4597	False	NA	NA	False	NA	NA	NA	11316166	11341936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526
8801	chr13	+	2019	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	61	2223	-4	-172	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGGTAAAGCAGGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	3588123	3615648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
8802	chr18	+	5630	14	ISM	ENSMUSG00000024561.12	ENSMUST00000097530.5	2833	15	-2	1505	-2	-7	5prime_fragment	FALSE	canonical	3	25	junction_10	17.696654984294	8	159	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTCTATTTTTATGTTA	NA	False	NA	NA	False	NA	NA	NA	74401243	74414298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587
8803	chr11	+	2633	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3957	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	1200	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCATCTGGCAATGTAG	NA	False	NA	NA	False	NA	NA	NA	55360559	55391707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55391538_55391601
8804	chrX	+	2443	3	NIC	ENSMUSG00000073125.11	novel	3780	7	NA	NA	4692	-6	intron_retention	FALSE	canonical	3	39	junction_1	862.5	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAATAGTTTCAGACTTG	NA	False	NA	NA	False	NA	NA	NA	72240519	72246520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72241992_72245455_72245552_72245645
8805	chr2	-	3552	21	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	295.725869683394	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017556	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001922_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012233_5013279_5013624_5013951_5014064_5015499_5015587_5017515
8808	chrX	-	4039	3	Antisense	novelGene_ENSMUSG00000025666.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	154	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCCGCGCCCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	80141483	80114294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_80114766_80127895_80128035_80138054
8810	chr2	+	2666	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-52	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	403.11191354728	3	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTGGAAACGATGTCCT	NA	False	NA	NA	False	NA	NA	NA	84867525	84877442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875840_84876056_84876117_84876596_84876784_84876989
8812	chr19	-	2133	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-62	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1377.10429776164	21	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCATTGCCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	15902356	15882494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886797_15889632_15889666_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
8814	chrX	+	5425	21	NIC	ENSMUSG00000041229.16	novel	5728	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_12	14.924727803213	90	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTGCTTGACATTATT	NA	False	NA	NA	False	NA	NA	NA	150304182	150416855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_150304316_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
8815	chr19	-	3191	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-17	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	508.089007950379	32	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTAACTACTTGGATTT	3896	False	NA	NA	False	NA	NA	NA	5345453	5323956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325002_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
8816	chr4	+	3354	25	FSM	ENSMUSG00000028582.15	ENSMUST00000030320.13	3303	25	30	-81	30	81	multi-exon	FALSE	canonical	3	165	junction_8	22.4730934798829	360	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTCTTCAAATGCCCT	3563	False	NA	NA	False	NA	NA	NA	108477166	108491401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
8817	chr4	+	901	1	Antisense	novelGene_ENSMUSG00000091985.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGCAGTAATTTGCAAT	NA	False	NA	44	True	NA	NA	NA	108491351	108492252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_108491400_108492300
8818	chr7	-	1626	10	FSM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	471	-6	-66	4	multi-exon	FALSE	canonical	3	441	junction_9	110.454616120026	1879	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCTTGTCGTTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	140748668	140740234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
8820	chr4	+	1943	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	5	2	multi-exon	FALSE	non_canonical	0	0	junction_1	35.3426377173001	19	57	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTTGGTTGTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	147216499	147669657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147534439_147534577_147578832_147578926_147637751_147637856_147665698_147665826_147667290_147667436_147667927_147668734_147669273
8822	chr6	-	4675	6	NIC	ENSMUSG00000029569.10	novel	4587	5	NA	NA	5	1	combination_of_known_junctions	TRUE	canonical	1	3	junction_5	105.174901949087	234	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTCTCAGACTCAGC	17	True	NA	NA	False	NA	NA	NA	13608013	13580684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13605785_13605959_13607828
8823	chr2	+	3329	6	NNC	ENSMUSG00000005804.15	novel	3484	5	NA	NA	5	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	56.2473110468403	82	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTCAGAATCACCCAGCATT	8301	False	NA	NA	False	NA	NA	NA	122580454	122591380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_122580625_122584508_122584651_122586045_122586134_122587974_122588062_122588430_122590404_122590511
8824	chr10	-	2981	14	Antisense	novelGene_ENSMUSG00000001785.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1106	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCGCAGGCGCGGGCGCT	NA	False	NA	NA	False	NA	NA	NA	85724963	85707728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_85707877_85710139_85710201_85710312_85710496_85712159_85712247_85712345_85712446_85714341_85714453_85715124_85715752_85717862_85717962_85718732_85718797_85720326_85720438_85721472_85721562_85721657_85721782_85723085_85723187_85723887
8825	chr2	+	3093	14	NNC	ENSMUSG00000026917.16	novel	1031	12	NA	NA	269	0	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	413.502960358027	1197	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	27405437	27426547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_27405765_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
8826	chr15	-	3004	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-5	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	972.418891219211	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACAGTGAGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	38300955	38294660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296409_38296858_38297601_38297641_38297772_38297865_38298097_38300802
8827	chr6	+	2184	8	Antisense	novelGene_ENSMUSG00000030177.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAGAGGCAGTAAGATCT	NA	False	NA	NA	False	NA	NA	NA	120301291	120319150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_120302452_120306051_120306207_120306293_120306423_120308774_120308993_120311729_120311876_120315026_120315122_120316095_120316158_120318931
8828	chr6	+	1576	4	Antisense	novelGene_ENSMUSG00000030177.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTCAAATCAGCGAGCAT	NA	False	NA	NA	False	NA	NA	NA	120324247	120334327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_120325492_120327167_120327406_120330961_120331013_120334284
8829	chr7	+	3989	5	NNC	ENSMUSG00000078779.5	novel	3437	5	NA	NA	-55	336	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	52.0600614675012	60	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTGTTTATTTTGCAT	353	False	NA	NA	False	NA	NA	NA	27537976	27556199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27538135_27542259_27542313_27543709_27543998_27545828_27545928_27552808
8831	chr11	-	1152	4	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10157.4651693553	144	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9938	False	NA	NA	False	NA	NA	NA	69812215	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69809933_69810163_69811988
8832	chr3	-	3670	3	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	109	-7	intron_retention	FALSE	canonical	3	9155	junction_1	905.5	5	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTTTGCTTCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	86049900	86045253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86048734_86049004_86049109_86049814
8833	chr2	-	5077	18	NNC	ENSMUSG00000025815.14	novel	3852	18	NA	NA	8	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.4538401405885	127	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACCATTTTACTCAAAT	NA	False	NA	NA	False	NA	NA	NA	5947595	5900903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5902337_5902753_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
8834	chr12	+	3119	4	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	21	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304.998724951797	1	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516911	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86561292_86561325_86565594_86565971_86566103
8835	chr6	-	2287	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-29	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	611.590236419738	9	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	8927	False	NA	NA	False	NA	NA	NA	47790327	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790222
8836	chr2	-	4349	34	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.171419825742193	1	123	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACGCCTAAATGCTACA	NA	False	NA	NA	False	NA	NA	NA	180998409	180961541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964289_180964625_180964682_180965143_180965236_180965474_180965536_180970393_180970471_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981028_180982283_180982387_180983315_180983366_180988617_180988693_180988801_180988885_180990965_180991101_180991255_180991367_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993155_180993361_180993491_180993593_180993744_180993830_180993976_180994547_180994641_180995768_180995967_180996143_180996233_180996798_180996923_180997123_180997339_180997441_180997604_180997714
8837	chrX	+	3190	20	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	36	-14	combination_of_known_junctions	FALSE	canonical	3	167	junction_1	154.864358485372	3	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCATCCATAGGTAAGGC	NA	False	NA	NA	False	NA	NA	NA	150799459	150842762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623
8838	chr5	+	2785	8	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	6	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	995.176366278862	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTAAGTATCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	34493795	34510772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507271_34507416_34508133_34508183_34508574_34509803_34509875
8839	chr1	-	5006	31	FSM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	-16	-223	-3	-6	multi-exon	FALSE	canonical	3	256	junction_21	30.4396671028665	217	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATTCTCCGAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	51955103	51788929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
8841	chr16	+	2917	20	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	717.125803665262	1	81	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTCTCTGTCTATTTCC	NA	False	NA	NA	False	NA	NA	NA	20470450	20482161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474519_20475288_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
8842	chr9	-	1004	7	ISM	ENSMUSG00000062270.15	ENSMUST00000191189.7	1223	11	16668	-5	-187	5	3prime_fragment	FALSE	canonical	3	3987	junction_6	1012.16721554406	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCCTTTTTTCATTTCA	NA	False	NA	NA	False	NA	NA	NA	89980129	89974202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916
8843	chr5	+	4321	12	FSM	ENSMUSG00000014932.16	ENSMUST00000072311.13	4586	12	259	6	108	-6	multi-exon	FALSE	canonical	3	102	junction_1	199.348401357942	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATCTATGTATTCTTT	NA	False	NA	NA	False	NA	NA	NA	32768786	32844395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_32769182_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
8845	chr10	+	4385	20	FSM	ENSMUSG00000019978.17	ENSMUST00000053748.16	4385	20	4	-4	4	0	multi-exon	FALSE	canonical	3	27	junction_12	117.367122957183	285	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	25235699	25399417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25369464_25369528_25371342_25371490_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
8846	chr5	-	2889	13	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-64	-7	intron_retention	FALSE	canonical	0	0	junction_11	614.039917947794	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCTCTTGCTTGTTAA	2256	False	NA	NA	False	NA	NA	NA	138170144	138162868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168574_138168659_138169987
8847	chr5	-	3497	17	NIC	ENSMUSG00000036693.13	novel	2702	18	NA	NA	36	-3	intron_retention	FALSE	canonical	3	17	junction_5	163.333045014626	7	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCAAGGCTGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	34817456	34795882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798802_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
8848	chr2	+	2382	10	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	132	junction_6	734.963944693888	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118779_130118951_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120816
8849	chr1	+	4374	9	NNC	ENSMUSG00000026349.15	novel	6738	9	NA	NA	52	-162	intron_retention	FALSE	non_canonical	0	0	junction_6	161.776079814044	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGCTAATGATGGACAG	NA	False	NA	NA	False	NA	NA	NA	127701952	127733507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727147_127727291_127729342_127729414_127729898
8850	chr1	+	3246	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	-35	2	-35	-2	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	631	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTTTTGGAGTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	180678656	180695676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
8851	chr10	+	2287	14	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	0	3	intron_retention	FALSE	non_canonical	0	0	junction_13	479.988325794918	28	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1621	False	NA	NA	False	NA	NA	NA	79690498	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699071_79699580
8852	chr3	+	646	1	Genic_Genomic	ENSMUSG00000007379.16	novel	NA	NA	NA	NA	20527	567	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATAGGCCCTAAAGACAA	2965	False	NA	NA	False	NA	NA	NA	103077006	103077652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_103077000_103077700
8853	chr13	-	3391	24	NNC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	49	3154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	116.386699816345	1	46	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTCATGGTTGTACTTC	NA	False	NA	NA	False	NA	NA	NA	99027457	98980411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000343_99000959_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027434
8854	chr3	+	2456	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	348	-9	348	8	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	96465623	96469182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
8855	chrX	-	3605	11	NNC	ENSMUSG00000031232.18	novel	1608	11	NA	NA	-51	1	intron_retention	FALSE	non_canonical	0	0	junction_1	70.7856623900632	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGGTTTTTTTATTCTC	NA	False	NA	NA	False	NA	NA	NA	105055443	105011688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012837_105013694_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
8856	chr3	-	3363	27	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_25	119.848400294933	432	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	100069709	100045495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069659
8857	chr1	+	2469	2	FSM	ENSMUSG00000050565.17	ENSMUST00000131359.2	621	2	13	-1861	13	1	multi-exon	FALSE	canonical	3	246	junction_1	0	965	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGGTTTTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	155916648	155929276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_155916881_155927039
8858	chr3	+	2939	11	ISM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	36	12913	-11	3423	5prime_fragment	FALSE	canonical	3	839	junction_3	70.7056574822694	5	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCAATATTATATTTAAT	NA	False	NA	NA	False	NA	NA	NA	69629353	69650793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841
8859	chr3	+	1400	2	ISM	ENSMUSG00000027787.15	ENSMUST00000150210.2	746	3	809	-1	809	1	3prime_fragment	FALSE	canonical	3	1038	junction_1	0	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTGTTGTGAAGGTTTC	NA	False	NA	NA	False	NA	NA	NA	69654573	69656376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_69655702_69656104
8861	chr11	+	2674	16	NNC	ENSMUSG00000040463.17	novel	4448	25	NA	NA	0	-216	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	694.55452069814	3	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGCCAATCTCTGACTCA	NA	False	NA	NA	False	NA	NA	NA	72332182	72342378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336515_72340054_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
8863	chrX	+	3225	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	15	277	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1128.97560363367	1	110	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCCTTATGTCCGATATA	NA	False	NA	NA	False	NA	NA	NA	20524674	20548721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537106_20537594_20537697_20537941_20538076_20538205_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
8866	chr17	-	3677	11	NIC	ENSMUSG00000024045.7	novel	4183	13	NA	NA	-4	-7	intron_retention	FALSE	canonical	3	426	junction_6	73.9821600117217	8	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTGTTAAGTCCTAAAA	NA	False	NA	NA	False	NA	NA	NA	32540137	32523977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32536853_32537744_32537784_32540058
8868	chr12	+	3149	28	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-25	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	277.727007705999	1	58	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAATAATTTTGCTACC	8001	False	NA	NA	False	NA	NA	NA	76302161	76366559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329813_76330703_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
8869	chr1	-	4436	9	Antisense	novelGene_ENSMUSG00000026349.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCGACAGCTCTTCATCC	NA	False	NA	NA	False	NA	NA	NA	127733668	127702073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127702123_127702837_127702919_127719339_127719471_127721094_127721155_127722990_127723053_127725575_127725621_127727123_127727290_127729341_127729413_127729897
8871	chr18	-	4328	7	FSM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	-34	5	-34	-5	multi-exon	FALSE	canonical	3	196	junction_1	46.8807589054993	370	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAAGAGTTTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	24663295	24618021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
8872	chr6	-	6119	22	NIC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	-4	-4	intron_retention	FALSE	canonical	3	177	junction_13	23.1919917369256	59	139	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTTTCAAAGTTGCTA	NA	False	NA	NA	False	NA	NA	NA	30873687	30748414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
8873	chr6	-	2595	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	75	27	-2	-5	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	2428	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTTGTCTCATGACTT	NA	False	NA	NA	False	NA	NA	NA	148847890	148822559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
8874	chr7	+	3360	28	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-303	21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	345.738195550948	2	106	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTTATTTTCTTCAATA	2317	False	NA	NA	False	NA	NA	NA	13012448	13045311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044928_13045027_13045120
8875	chr5	-	3320	4	FSM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	18	3	18	-3	multi-exon	FALSE	canonical	3	41	junction_1	21.5148527508066	136	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTGCCATGGTCATGGT	6149	False	NA	NA	False	NA	NA	NA	109838889	109822413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_109825258_109826379_109826441_109826628_109826756_109838601
8876	chr2	-	4700	19	NNC	ENSMUSG00000034101.15	novel	6170	19	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.2040652404741	9	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGGGAGGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	84481079	84431129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84431589_84432237_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
8877	chr3	-	3222	23	NNC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	404	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	293.061627936165	1	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTTCTTTCCGTGCA	8127	False	NA	NA	False	NA	NA	NA	89955202	89913523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89955097
8878	chr16	-	3122	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	-5373	-149	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	453.192685289602	1	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGCTCTGACTCTTGCCT	857	False	NA	NA	False	NA	NA	NA	38375993	38345650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355024_38355187_38358268_38358329_38363195_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38375367
8879	chr9	+	4490	12	NIC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_1	395.134374047259	34	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	25163946	25219862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25215149_25217421_25217562_25218808
8880	chr5	-	2232	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-11	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	570.179746989974	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAACTCTGTAGAGTTT	2309	False	NA	-100	True	NA	NA	NA	138170091	138162852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165022_138165429_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
8881	chr3	+	4940	25	FSM	ENSMUSG00000002428.13	ENSMUST00000002502.12	4955	25	9	6	0	-6	multi-exon	FALSE	canonical	3	160	junction_12	28.4765680965168	136	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTCTTTGGTGTCACTTA	6947	False	NA	NA	False	NA	NA	NA	20111983	20172648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735
8883	chr2	-	3271	6	NNC	ENSMUSG00000050043.17	novel	2282	9	NA	NA	-10	0	intron_retention	FALSE	non_canonical	0	0	junction_2	669.481291747574	10	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5281	False	NA	NA	False	NA	NA	NA	84508410	84501659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84502877_84503367_84504346_84505140_84505826_84506088_84506203_84506440_84506502_84508194
8884	chr16	-	3134	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-5	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.517620676923	4	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8105	False	NA	NA	False	NA	NA	NA	4867732	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832918_4833086_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839309_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
8886	chr9	-	3968	7	NNC	ENSMUSG00000066357.7	novel	4163	6	NA	NA	24	-4	intron_retention	FALSE	non_canonical	0	0	junction_5	68.2285782417375	244	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCTGTGCCTTACCAT	5775	False	NA	NA	False	NA	NA	NA	108455914	108449513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299_108452103_108452269_108453782_108455692
8887	chr3	+	2649	9	NNC	ENSMUSG00000038393.15	novel	2827	8	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	165.336588509622	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	96465275	96469182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794_96468762_96468919
8888	chr13	-	2164	8	FSM	ENSMUSG00000041431.17	ENSMUST00000091295.14	2140	8	-29	5	-29	-5	multi-exon	FALSE	canonical	3	49	junction_5	1285.22781272903	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTCTCATTTGCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	100923023	100915244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240_100922412_100922889
8889	chr16	-	1234	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	11	848	11	-848	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGAAGCCCACCTGGGC	NA	False	NA	NA	False	NA	NA	NA	45975429	45974195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45974200_45975400
8890	chr8	+	5200	26	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	-20	0	intron_retention	FALSE	canonical	3	128	junction_13	74.2892078299399	4	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCTTTGATGTGACTA	3306	False	NA	NA	False	NA	NA	NA	106607562	106619857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106607791_106611132_106611290_106611664_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614678_106614752_106615151_106615227_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
8891	chr12	-	3761	7	NNC	ENSMUSG00000079036.11	novel	3857	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	108.325768966679	14	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	87490592	87472938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87473540_87473618_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
8894	chrX	+	2655	9	NNC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	0	393	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_5	473.64035670538	29	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATGTCTCCTACTTGA	NA	False	NA	NA	False	NA	NA	NA	72235816	72246929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241214_72241992_72243351_72243451_72245455_72245552_72245645
8895	chr19	-	3157	20	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	523.202084335137	2	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTGGCTAACTACTTG	3910	False	NA	NA	False	NA	NA	NA	5345439	5323961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336507_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
8897	chr6	+	3773	20	Antisense	novelGene_ENSMUSG00000038429.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	89	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTACCGCCCCCCTCCGTC	NA	False	NA	NA	False	NA	NA	NA	124791994	124806403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124792618_124793949_124794027_124794280_124794435_124794629_124794778_124794852_124794997_124795508_124795627_124796330_124796404_124796935_124797128_124797373_124797529_124798039_124798165_124798283_124798371_124798847_124798918_124799485_124799685_124800417_124801284_124801521_124801663_124801812_124801946_124802069_124802138_124803268_124803387_124804976_124805101_124806245
8898	chr7	-	4272	8	NNC	ENSMUSG00000030741.16	novel	3251	10	NA	NA	-9	-52	intron_retention	FALSE	non_canonical	0	0	junction_4	165.606984965574	1	189	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCAAGGGGTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	125976602	125969290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970789_125971141_125971320_125971583_125974376_125975845_125975912_125976008
8899	chr11	-	2022	10	ISM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	1053	1	-42	0	3prime_fragment	FALSE	canonical	3	12659	junction_4	747.862138216515	106	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69562090	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753
8900	chr5	-	2727	1	Intergenic	novelGene_770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	230	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGGGACTCGAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	104733134	104730407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_104730400_104733100
8901	chr9	+	5340	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	14	-154	intron_retention	FALSE	canonical	3	126	junction_2	40.4984252654297	2	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGATGAAAACTGCAGTC	NA	False	NA	NA	False	NA	NA	NA	19533437	19560873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19556604_19557997
8902	chr8	+	5013	28	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	32	-10	intron_retention	FALSE	canonical	3	128	junction_15	72.2286226983449	256	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAGAAAGTATGTGTGT	3288	False	NA	NA	False	NA	NA	NA	106607544	106619830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106607791_106611132_106611290_106611664_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615227_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
8903	chr3	+	4998	8	NIC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	131	-3	intron_retention	FALSE	canonical	3	1030	junction_1	84.4185394088192	4	79	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGCATCATGTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	97066223	97083831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97079059_97081118_97081215_97082943_97083110_97083646
8904	chr13	-	2902	16	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	27	450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	194.682876037473	49	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGTTCTAGACAAGGCT	NA	False	NA	NA	False	NA	NA	NA	9046059	9022065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024318_9027301_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
8905	chr10	-	2482	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-24	2	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_11	595.517928618262	4614	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGTGTTCTCTTTGTG	8668	False	NA	NA	False	NA	NA	NA	128401880	128393632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401637
8906	chr19	-	2497	20	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-16	-956	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	404.246544447891	4	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCAGAAGTACGAGGAGCA	3897	False	NA	NA	False	NA	NA	NA	5345452	5324915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329976_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
8907	chrX	-	3025	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3359	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227933	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085710_23085904_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
8908	chr16	-	2956	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.566912506689	12	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8110	False	NA	NA	False	NA	NA	NA	4867727	4831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832497_4832845_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
8909	chr2	+	4966	26	FSM	ENSMUSG00000035437.16	ENSMUST00000061179.12	4967	26	0	1	0	-1	multi-exon	FALSE	canonical	3	116	junction_1	34.3579743291132	229	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTGCTTCATACAAAAGT	1545	False	NA	NA	False	NA	NA	NA	37333296	37456448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
8910	chr9	+	5458	7	NNC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	8	-15	intron_retention	FALSE	non_canonical	0	0	junction_5	77.2731446809879	5	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGATTACAAGATTACAATG	NA	False	NA	NA	False	NA	NA	NA	19533405	19561012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554902_19556604_19557997
8911	chr11	-	2979	20	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-11	-4	intron_retention	FALSE	canonical	3	632	junction_7	78.3004017140861	1	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGATAACTTTTCTGATAG	NA	False	NA	NA	False	NA	NA	NA	106146641	106139971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
8912	chr4	+	3195	18	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	-18	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	192.216645362272	2	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTTATAGAAAAGAACTG	5223	False	NA	NA	False	NA	NA	NA	108436601	108472016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108457674_108457821_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
8913	chr5	+	2113	12	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	14	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	771.944426981054	3	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650729	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654310_45655785_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
8914	chr17	-	2106	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	-6	150	-6	-2	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	1557	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCTTGTCAGTGAG	NA	False	NA	NA	False	NA	NA	NA	13179640	13161926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
8915	chrX	+	2379	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	-58	3	-58	-3	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	1508	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATTATGGTTACAGTTT	NA	False	NA	NA	False	NA	NA	NA	12453981	12483285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
8916	chr9	-	2215	12	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	7	15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	76.1088824216403	450	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTGCTTAACAGCCAG	NA	False	NA	NA	False	NA	NA	NA	13738396	13719105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719756_13720040_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
8917	chr14	+	2039	8	Antisense	novelGene_ENSMUSG00000077797.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCCGGGCCGAGTGCGCG	2771	False	NA	NA	False	NA	NA	NA	30735650	30741021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30736984_30737231_30737345_30738281_30738348_30738781_30738864_30739012_30739127_30739234_30739369_30739762_30739824_30740885
8918	chr11	-	2934	4	NNC	ENSMUSG00000035455.13	novel	2974	3	NA	NA	2	-95	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	276.967306534343	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCATTTTGACGGAGTT	NA	False	NA	NA	False	NA	NA	NA	11758930	11750382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11752592_11752794_11753064_11756095_11756216_11758594
8919	chr16	-	3200	17	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	16	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	341.383742107031	1	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8132	False	NA	NA	False	NA	NA	NA	4867705	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832322_4832383_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
8920	chr17	+	4000	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	187	9	-7	-9	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	420	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTGTGTCTCTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	29171418	29188514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
8921	chr1	+	3080	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	27	146	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	437.289568440257	1	64	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAGTTGATTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	85992440	86067019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017905_86019724_86019821_86021997_86022063_86044296_86044371_86046260_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
8922	chr3	+	4500	8	NIC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-3	2	intron_retention	FALSE	canonical	1	4	junction_3	349.519203291304	1	157	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTATTTTCCCTACTGCC	NA	False	NA	NA	False	NA	NA	NA	102965660	102975224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102965757_102966220_102966349_102967254_102967351_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
8923	chr19	+	2773	10	NIC	ENSMUSG00000015176.12	novel	2978	13	NA	NA	-7	1	intron_retention	FALSE	canonical	3	421	junction_3	163.753880361148	212	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTGTGATTTTCAGA	21	False	NA	NA	False	NA	NA	NA	46064444	46072901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46064589_46067141_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071803_46071958_46072283_46072450
8924	chr11	-	2168	8	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	9657	junction_7	1463.19019646128	154	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563143	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
8925	chr4	-	5669	37	NNC	ENSMUSG00000039298.17	novel	11847	37	NA	NA	-12	-4	at_least_one_novel_splicesite	TRUE	canonical	3	31	junction_17	39.3689810214421	109	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGATCAGCTGCCTCTGT	NA	False	NA	NA	False	NA	NA	NA	70328667	70141263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199766_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
8926	chr18	-	1476	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	49	764	-17	361	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAAGAACCTGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	38472007	38461374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
8927	chrX	-	2666	14	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-22	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	425.827617426716	1239	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGTGCTTCTCATC	NA	False	NA	NA	False	NA	NA	NA	93585631	93579081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582474_93582508_93582888_93583460_93584154_93584856_93584931_93585497
8929	chr7	-	3199	11	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	-6	1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_9	78.1811358321175	16	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTTATTTTTCTGTGT	9598	False	NA	NA	False	NA	NA	NA	3218937	3204496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3213722_3214128_3218840
8930	chr5	-	1616	11	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	671.455501131683	15	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2336	False	NA	-73	True	NA	NA	NA	138170064	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166198_138167698_138167736_138167821_138167987_138168578_138168659_138169987
8932	chr5	-	3462	12	NIC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	85	2	intron_retention	FALSE	canonical	3	1197	junction_11	118.63779170161	14	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGGGTCTCTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	24782380	24770340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
8933	chr12	-	2575	27	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-18	-2334	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	575.976666039941	2204	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299182	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13291033_13291133_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
8934	chr1	-	6972	8	ISM	ENSMUSG00000026103.15	ENSMUST00000114510.8	5596	15	29493	1183	-3257	-7	3prime_fragment	FALSE	canonical	3	177	junction_1	21.4037952003749	165	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGATTTTATTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	52242898	52224445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_52226954_52227837_52227931_52228581_52228714_52230269_52230447_52235323_52235375_52235901_52235969_52238869_52238929_52239013
8935	chr2	-	2364	11	NNC	ENSMUSG00000026925.17	novel	4147	10	NA	NA	2350	5167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	55	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGGAAATAAGCCACAAT	7609	False	NA	-65	True	NA	NA	NA	26287133	26281093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26281188_26281874_26281979_26282423_26282686_26282915_26283010_26283096_26283215_26283306_26283400_26283529_26283592_26285035_26285182_26285430_26286022_26286195_26286462_26286599
8936	chr13	+	4069	19	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	25	-195	intron_retention	FALSE	canonical	3	9	junction_7	69.147386871169	1	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGAACCTACACCCGTC	NA	False	NA	NA	False	NA	NA	NA	35059511	35087658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077299_35077406_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35086659_35087169_35087257_35087512
8939	chr5	+	3313	26	NNC	ENSMUSG00000029176.14	novel	3854	28	NA	NA	87	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	120.929109812319	216	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCATACTCTGTTCCA	NA	False	NA	NA	False	NA	NA	NA	52991554	53024076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013473_53013558_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
8940	chr3	-	3309	25	NNC	ENSMUSG00000042520.17	novel	3494	26	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	256.224334758083	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	3505	False	NA	NA	False	NA	NA	NA	89959824	89913526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946269_89952148_89952239_89955076_89955207_89959761
8941	chr11	-	4632	16	FSM	ENSMUSG00000009073.17	ENSMUST00000109910.9	4720	16	81	7	81	-7	multi-exon	FALSE	canonical	3	105	junction_1	67.5504749551524	247	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	8926	False	NA	NA	False	NA	NA	NA	4799455	4715851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_4718274_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
8942	chr10	+	2865	19	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_17	322.386624726382	78	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTATTGCAAAAATGTG	NA	False	NA	NA	False	NA	NA	NA	21171909	21244781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21241551_21241663_21243540_21243686_21244187
8943	chr2	-	2353	1	Antisense	novelGene_ENSMUSG00000027332.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATACAGTTTGGCATCT	2120	False	NA	NA	False	NA	NA	NA	118713352	118710999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_118711000_118713400
8945	chr9	-	4557	10	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	-304	-8	intron_retention	FALSE	canonical	2	2	junction_2	82.4968386973812	13	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTAACAGCCAGCTAACAA	NA	False	NA	NA	False	NA	NA	NA	13738707	13719098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13720137_13721155_13721270_13721922_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
8946	chr16	-	3180	7	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-787	3	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_6	376.188080914617	6	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	NA	False	NA	NA	False	NA	NA	NA	22221366	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22221226
8948	chr7	-	2616	18	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	595.315019395899	2217	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCCTCTGTTGCCCTA	NA	False	NA	NA	False	NA	NA	NA	33867991	33840120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33864988_33865043_33867797
8949	chr7	+	3695	7	NNC	ENSMUSG00000091474.3	novel	4004	6	NA	NA	-16	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	79.7191249882291	11	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGCTACCTTGGGGTA	NA	False	NA	NA	False	NA	NA	NA	41248731	41277947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_41248825_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676_41276289_41276540
8951	chr1	-	2089	12	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	1971	5778	1540	-1	3prime_fragment	FALSE	canonical	3	5903	junction_8	870.888621888894	2	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCAGACTTAATACTTC	NA	False	NA	NA	False	NA	NA	NA	86285151	86278218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
8952	chr8	-	3798	23	NNC	ENSMUSG00000000759.15	novel	3797	22	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	48.2476394318292	235	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTCATGTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	12722125	12664278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12688860_12688987_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
8953	chr13	+	2149	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	80	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	779.978204823699	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588227	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3599062_3600988_3601089_3604441_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
8954	chr4	-	2878	8	NIC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	-8	-12	combination_of_known_splicesites	FALSE	canonical	3	89	junction_1	526.640255946764	6	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGTTCTTTCCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	141327207	141303384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141305255_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
8955	chr7	-	5078	7	NNC	ENSMUSG00000063801.8	novel	5813	6	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.726365273589	775	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTGTGGCCATGCATTT	NA	False	NA	NA	False	NA	NA	NA	79570385	79525073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79527736_79528457_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
8956	chr2	+	3560	18	NNC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_17	128.519517723909	136	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAACTCGAATGCAAGG	NA	False	NA	NA	False	NA	NA	NA	153003463	153052373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050608
8957	chr10	-	1465	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-4	1022	-4	-1022	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCTCATCCCGGTCCCC	9	True	NA	NA	False	NA	NA	NA	128401860	128394658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
8958	chr8	+	2773	16	Antisense	novelGene_ENSMUSG00000033732.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	339	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGATACAAGTAACTGGG	105	False	NA	NA	False	NA	NA	NA	111537123	111562331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_111537714_111538022_111538125_111538607_111538754_111539596_111539692_111540249_111540468_111541161_111541288_111542534_111542692_111542786_111542992_111544174_111544350_111547337_111547492_111548097_111548226_111550008_111550150_111550795_111550953_111552133_111552287_111552723_111552872_111562253
8960	chr6	+	3602	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	82	-1030	-13	0	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	1859	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	71520862	71559593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
8961	chr8	+	2648	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	74	4	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_9	421.683114303726	1	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	NA	False	NA	NA	NA	75836325	75854325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847779_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
8962	chr1	+	4696	11	FSM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	-2	3	-2	-3	multi-exon	FALSE	canonical	3	130	junction_4	13.4402380931292	303	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTATCCCTGTGTG	5200	False	NA	NA	False	NA	NA	NA	131755712	131776600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131756132_131757748_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287
8963	chr6	-	2792	22	NNC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	15	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	50.9543390811991	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTCAAAGTTGCTATAC	NA	False	NA	NA	False	NA	NA	NA	30873714	30748411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788610_30792991_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
8965	chr3	-	3492	29	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	345.861782290237	1	68	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTAAGATCTCTCACC	3553	False	NA	NA	False	NA	NA	NA	89959776	89907455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924063_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933895_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
8966	chr18	-	2808	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	7	-225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1564.94871621245	1	80	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	206	False	NA	NA	False	NA	NA	NA	35087403	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085457_35085537_35085729_35085789_35087222
8967	chr9	-	4577	22	FSM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	22	48	22	-48	multi-exon	FALSE	canonical	3	93	junction_7	54.8151294142266	196	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACGTGCTAATAAAAGCCAA	NA	False	NA	NA	False	NA	NA	NA	99450930	99360472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
8968	SIRV7	-	2464	5	FSM	SIRV7A	SIRV701	2462	5	0	-2	0	-1	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	13	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147923	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
8969	chr5	+	1693	8	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	42	-1034	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	995.176366278862	2	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGTTGCCCTACTCAACC	NA	False	NA	NA	False	NA	NA	NA	34493831	34509734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574_34509306_34509414
8970	chr2	-	2655	13	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	102	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAACCAGAGGCGGGGCG	NA	False	NA	NA	False	NA	NA	NA	152122359	152068761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068908_152092317_152092397_152096131_152096240_152099295_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118950_152120884
8971	chr8	+	3357	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-13	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	438.849517953802	1	82	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGATCACAAAGTTGGT	8814	False	NA	NA	False	NA	NA	NA	120637539	120684274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677002_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
8972	chr8	+	3406	17	NNC	ENSMUSG00000000303.13	novel	3203	17	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	254.482563253359	6	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGAGGCTCACTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395800_107396801
8973	chr18	+	2921	22	NIC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	12	11	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	266.031795279762	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATAAGCATAATGC	0	True	NA	NA	False	NA	NA	NA	3383243	3435396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3416467_3416554_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
8975	chr16	-	3707	13	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	0	51	intron_retention	FALSE	non_canonical	0	0	junction_2	657.271311095265	197	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTTGCTATACCAAACG	9195	False	NA	NA	False	NA	NA	NA	91525496	91486362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487642_91489486_91489593_91489731_91490192_91490231_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
8976	chr16	+	2397	10	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-15	-8	intron_retention	FALSE	non_canonical	0	0	junction_4	874.256184732605	116	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGACTTTGTTTTGTTT	1379	False	NA	NA	False	NA	NA	NA	20354253	20362798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361501_20362060
8979	chr10	-	3915	10	Antisense	novelGene_ENSMUSG00000035754.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4118	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCGCCCCTGAATCCCA	1083	False	NA	NA	False	NA	NA	NA	79806039	79795985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79796205_79796833_79796945_79800757_79800891_79801040_79801184_79801811_79801954_79802033_79802102_79802175_79802302_79802391_79802559_79803151_79803221_79803302
8981	chr12	+	3336	7	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	116	-46	intron_retention	FALSE	canonical	3	5416	junction_6	530.222909098931	4	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCAACTGGCTACACCAT	NA	False	NA	NA	False	NA	NA	NA	24758355	24763294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
8982	chr15	-	3142	6	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	-1	55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.067987835932	17	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTATATTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	38519495	38488426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490624_38498991_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
8983	chr6	+	4263	25	NIC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	24	junction_20	97.2458225323844	2	82	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAACACTGTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	83891373	83963846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83956828_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
8984	chr6	-	3814	7	NIC	ENSMUSG00000030168.14	novel	4184	8	NA	NA	-50	-3	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	48.4309359351598	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTTGTTGTGTTTTTT	7504	False	NA	NA	False	NA	NA	NA	119394486	119330113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_119332890_119334176_119334371_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119394380
8986	chr8	-	3795	17	NIC	ENSMUSG00000052488.8	novel	3713	18	NA	NA	-4	-12	intron_retention	FALSE	canonical	3	101	junction_12	120.993656212836	633	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCTTTTGTAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	73228983	73214344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
8988	chr16	-	2437	18	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	-21	-7	at_least_one_novel_splicesite	FALSE	canonical	2	124	junction_2	254.542700070478	1634	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGTGGCAGACGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	3895660	3857841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861661_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
8989	chr19	-	4084	6	ISM	ENSMUSG00000037916.15	ENSMUST00000134479.8	1438	9	3	13	-2	-7	intron_retention	FALSE	canonical	3	1340	junction_2	97.2555396879787	22	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAACCATAGCTTGTCTGG	6569	False	NA	NA	False	NA	NA	NA	4062663	4057509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343
8990	chr11	+	2929	5	NIC	ENSMUSG00000038335.14	novel	708	7	NA	NA	568	-5	intron_retention	FALSE	canonical	3	743	junction_1	57.8289503622537	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGCTTGTCTGGATTC	NA	False	NA	NA	False	NA	NA	NA	74795363	74800163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
8991	chr16	-	2217	9	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	585	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	829.826600863096	16	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	22084679	22064612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067811_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
8992	chr15	-	3376	7	NNC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	6	123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.478617835875	13	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGAAGCTTTTAATGAAT	NA	False	NA	NA	False	NA	NA	NA	38519501	38488358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490624_38498991_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
8994	chr7	-	3073	22	NNC	ENSMUSG00000054808.16	novel	3530	22	NA	NA	44	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	324.644651364941	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAGAAGGACTCTGGT	NA	False	NA	NA	False	NA	NA	NA	28661721	28592685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28592878_28593624_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
8995	chr1	+	2934	7	NNC	ENSMUSG00000051223.15	novel	1615	10	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	678.500798329179	9	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACGTACTGTGTCTGTGCT	895	False	NA	NA	False	NA	NA	NA	58432294	58446510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58436888_58442045_58442193_58442773_58442913_58443390_58443514_58444193
8996	chr8	-	2291	17	NNC	ENSMUSG00000031575.19	novel	3307	16	NA	NA	13	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	1104.21971885128	2	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTATGGTACTTGGC	NA	False	NA	NA	False	NA	NA	NA	26330777	26306911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609_26330663_26330752
8998	chr6	-	2176	8	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-54	-2	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	1423.55806029133	29	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAACTCTGGATTTGAA	8431	False	NA	NA	False	NA	NA	NA	145021964	144944885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144993017_144993090_145021614
9000	chr4	-	3216	7	FSM	ENSMUSG00000040550.18	ENSMUST00000236953.2	3257	7	39	2	39	-2	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	834	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACATGTGTATATTCAAA	1	True	NA	NA	False	NA	NA	NA	14826548	14809508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
9001	chr17	+	3357	11	NNC	ENSMUSG00000061607.16	novel	649	4	NA	NA	57	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	56.1648466569615	3	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATTTTCCTGCAGT	9447	False	NA	NA	False	NA	NA	NA	36152624	36170556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161406_36162004_36162049_36163306_36163581_36169867
9002	chr17	+	2960	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	0	-87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	452.846964584431	1	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTCTGTAGCTGGGTGCT	4892	False	NA	NA	False	NA	NA	NA	87979988	88031054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026720_88026964_88028310_88028487_88030758
9005	chr6	+	2708	15	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-37	-4	intron_retention	FALSE	canonical	0	0	junction_7	211.523542859119	4	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGTTGCTGTTGTGTTTT	5400	False	NA	NA	False	NA	NA	NA	125108834	125121712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
9006	chr9	+	4504	29	NIC	ENSMUSG00000035024.17	novel	5149	35	NA	NA	101	744	intron_retention	FALSE	canonical	3	212	junction_3	20.9256153446206	2	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATGGACCTCTGAAGAT	NA	False	NA	NA	False	NA	NA	NA	26942045	26999457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274
9007	chrX	+	2054	10	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	70	4	7	-4	intron_retention	FALSE	canonical	3	4366	junction_7	267.116888456656	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTTTTCCTGTCATAC	NA	False	NA	NA	False	NA	NA	NA	105230775	105247301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442
9008	chr18	+	3583	12	NIC	ENSMUSG00000024404.8	novel	3790	13	NA	NA	6	-6	intron_retention	FALSE	canonical	3	395	junction_3	16.4869094077144	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAATTGGTTCATTGTGT	5550	False	NA	NA	False	NA	NA	NA	12261842	12289752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
9009	chr17	+	3586	8	NIC	ENSMUSG00000024188.17	novel	2670	9	NA	NA	26	-27	intron_retention	FALSE	canonical	3	531	junction_1	36.4159642049966	36	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTCTTTGCTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	26471895	26499666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
9010	chr5	+	4723	12	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	464	-21	intron_retention	FALSE	non_canonical	0	0	junction_7	1679.55790129476	1	178	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAAGCTACTGGATCAT	NA	False	NA	NA	False	NA	NA	NA	129864525	129875191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869104_129870220_129870249_129870796_129871414_129871563_129872181_129872316_129873810_129874497_129874588
9011	chr13	-	4687	19	Antisense	novelGene_ENSMUSG00000021413.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAACTCGGCGTCCGGG	NA	False	NA	NA	False	NA	NA	NA	35090045	35059486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_35059678_35067213_35068416_35070655_35070825_35072104_35072263_35073494_35073575_35074475_35074688_35076071_35076145_35077297_35077405_35077742_35077835_35078417_35078566_35079301_35079438_35079947_35080101_35083088_35083207_35083813_35083964_35084344_35084433_35085374_35086113_35086610_35087255_35088024_35088071_35089863
9012	chr15	-	3170	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.638995176448	42	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033530	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83010841_83010914_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
9015	chr1	-	2233	7	Antisense	novelGene_ENSMUSG00000033813.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATTCCTAAACAGTCT	4271	False	NA	NA	False	NA	NA	NA	4968132	4956955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_4957053_4959677_4959824_4960960_4961020_4962137_4962291_4963637_4963785_4965151_4965227_4966576
9016	chr8	+	3047	14	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	351.231594729311	8	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390520_107395532_107395641_107395924
9017	chr12	-	2164	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	198	-252	-108	-6	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	128	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTGCCTTGGCTGGTAT	NA	False	NA	NA	False	NA	NA	NA	21467239	21440077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
9018	chr1	-	2885	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	813.144042820828	35	58	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATTGTCTGTTGGATTC	NA	False	NA	NA	False	NA	NA	NA	128287387	128259331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259783_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
9019	chr7	-	2963	19	NNC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	44	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	348.077280513791	41	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTCTGGTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	28661721	28592678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593209_28595533_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
9021	chr15	-	2978	4	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1099.18343429212	3	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACAGTGAGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	38300942	38294660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296412_38296915_38297772_38297865_38298097_38300802
9022	chr13	+	2956	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	51	-6	intron_retention	FALSE	non_canonical	0	0	junction_3	83.7549335196971	6	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAATATTGCGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	97619259	97633509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619541_97629663_97629996_97630912_97633053_97633306
9023	chr6	+	2485	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	206.283558885983	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5432	False	NA	NA	False	NA	NA	NA	125108866	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114065_125114276_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
9024	chr19	+	3853	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-36	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	136.857361877248	97	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGAGCTTGTGTGTGTGG	3889	False	NA	NA	False	NA	NA	NA	53933267	54021559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018363_54019485
9025	chr17	-	3201	14	NIC	ENSMUSG00000024045.7	novel	4570	14	NA	NA	1	3	intron_retention	FALSE	canonical	3	51	junction_6	190.810820528526	225	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTTGTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	32540086	32523662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32532078_32532237_32533084_32533119_32534415_32534463_32534628_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
9026	chr7	-	3401	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	364.237990343494	2	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198218	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189873_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191394_44191544_44191675_44192188_44192303_44192664_44192861_44198178
9027	chr4	-	2538	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-9353	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	202.64069186617	10	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	2482	False	NA	NA	False	NA	NA	NA	147736323	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147736200
9028	chr3	+	2283	5	NNC	ENSMUSG00000041355.14	novel	494	3	NA	NA	268	1	intron_retention	FALSE	non_canonical	0	0	junction_1	2407.63020156751	12	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGTCTTGCGTCAAC	166	False	NA	NA	False	NA	NA	NA	88483523	88495727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88484347_88487770_88488204_88490783_88491193_88494171_88494250_88495187
9030	chr15	-	3654	8	NIC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	-2	230	combination_of_known_splicesites	FALSE	canonical	3	13	junction_2	109.959547292704	189	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTTTTAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	12824729	12808501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_12810931_12812018_12812159_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
9032	chr9	+	962	4	ISM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	34	12344	34	-12344	intron_retention	FALSE	canonical	3	166	junction_1	18.1536650722535	3	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTCCTGGGGTCTCCA	NA	False	NA	NA	False	NA	NA	NA	56858195	56878146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537
9033	chr12	-	2710	11	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	-8	0	intron_retention	FALSE	non_canonical	0	0	junction_3	592.004763494349	1466	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860071	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832011_108832098_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
9036	chr11	-	2830	16	NIC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	430.299874764358	1	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239136	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75239051
9037	chr12	+	2661	8	NIC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	-43	-1	intron_retention	FALSE	canonical	3	68	junction_5	743.846072512208	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGGTCTGTTTCTCTCA	NA	False	NA	NA	False	NA	NA	NA	80992234	80997280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995943_80996267_80996379_80996493
9039	chr7	+	5001	33	NNC	ENSMUSG00000013928.14	novel	1182	4	NA	NA	-39800	-1481	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	125	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCCGGCGCCACCGCCC	NA	False	NA	NA	False	NA	NA	NA	29939718	29979839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29939912_29940003_29940146_29940659_29941312_29941439_29941489_29941566_29941698_29941820_29941938_29942170_29942571_29942861_29942959_29943256_29943382_29943894_29943966_29944116_29944314_29944713_29944935_29947043_29947094_29949203_29949337_29950099_29950226_29950816_29950881_29950957_29951068_29951738_29951816_29953406_29953529_29953609_29953683_29955232_29955358_29957482_29957572_29960711_29960894_29962036_29962169_29964500_29964691_29967198_29967374_29969579_29969755_29970101_29970242_29971031_29971203_29971751_29971809_29973372_29973434_29974524_29974612_29979572
9040	chr5	-	5540	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	40	-1345	-19	1345	multi-exon	TRUE	canonical	3	140	junction_1	30.3840007240653	314	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAACATAGTTGAGCAAG	9973	False	NA	NA	False	NA	NA	NA	123711061	123665376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
9041	chr15	-	2858	17	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	202.408621357886	95	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	81614081	81588453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81602994_81603045_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
9042	chrX	+	2251	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-46	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1593.37452601869	1	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488948_100489732_100489835_100491199_100491970_100492081
9043	chr9	-	3349	12	NNC	ENSMUSG00000032113.17	novel	3797	12	NA	NA	225	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_10	127.208035506884	4	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	1157	False	NA	NA	False	NA	NA	NA	36637445	36620735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36634357_36635317_36637092
9045	chr7	-	2907	17	FSM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	4	2	4	0	multi-exon	FALSE	canonical	3	340	junction_7	190.956545694956	657	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	144024478	143989471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
9046	chr9	+	4761	10	NNC	ENSMUSG00000032401.16	novel	1380	10	NA	NA	15118	19927	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	88	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGTACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64044434	64065327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64045344_64047173_64047302_64051364_64051475_64054106_64054203_64054551_64054688_64056546_64056708_64057435_64057595_64060166_64060244_64060829_64060932_64062444
9050	chrX	+	2493	18	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	26	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1102.56902898087	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529162	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529262_20537997_20538076_20538209_20538391_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
9052	chr4	-	2463	4	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	1491	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	225.71712877454	2	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATTTTGACTTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	147725462	147696398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702962_147725321
9053	chr5	-	5522	2	NIC	ENSMUSG00000046572.11	novel	6816	3	NA	NA	5	-913	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCCACCCCACCCGACTC	NA	False	NA	NA	False	NA	NA	NA	38842088	38826741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_38832197_38842021
9054	chr13	+	4014	8	NNC	ENSMUSG00000021712.16	novel	4258	10	NA	NA	4578	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	81.6503246178733	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATCTGACTGTGACGTA	NA	False	NA	NA	False	NA	NA	NA	104320183	104339523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104337735
9055	chr17	-	2942	18	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-1061	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.51740764298	60	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTGAATAAAAAGATAACA	8756	False	NA	NA	False	NA	NA	NA	24470302	24442232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443177_24443225_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
9056	chr7	-	2126	17	NIC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-1	30	intron_retention	FALSE	canonical	3	1600	junction_14	131.087220486972	179	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTACTTTTATCTGTTA	NA	False	NA	NA	False	NA	NA	NA	33929715	33901553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
9057	chr15	-	2446	18	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	55	295	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1048.59535639506	1	54	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACAGAGTTGAATTATG	2	True	NA	NA	False	NA	NA	NA	11399632	11383795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387469_11387578_11387712_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
9058	chr11	-	3734	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	32	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	376	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	NA	NA	NA	103844850	103712607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
9059	chr6	-	3921	13	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	8	-967	intron_retention	FALSE	canonical	3	798	junction_4	70.7935182218134	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTGTTTAAAGCAAACT	NA	False	NA	NA	False	NA	NA	NA	148113511	148081543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148083238_148083385_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
9061	chrX	+	3640	13	NNC	ENSMUSG00000044150.13	novel	578	4	NA	NA	6	-8	intron_retention	FALSE	canonical	3	25	junction_1	228.030501736549	3	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGCAGTTGGTGAGAGC	NA	False	NA	NA	False	NA	NA	NA	158309689	158376069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349452_158350914_158351011_158357940_158358094_158374327_158374354_158375066
9062	chr3	+	2302	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	-3	0	-3	0	multi-exon	TRUE	canonical	3	611	junction_6	73.3195163601748	2620	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	58433238	58464922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
9063	chr7	+	4007	13	NNC	ENSMUSG00000031015.9	novel	4027	12	NA	NA	-8	-77	intron_retention	FALSE	canonical	2	7	junction_2	120.550905568284	403	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGGGATTTTTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	109820929	109882636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109821117_109824877_109824947_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
9064	chr11	+	4153	23	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	1	-3	intron_retention	FALSE	canonical	1	1	junction_2	42.9553150484209	234	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTCCAGTCCACTGAAT	2848	False	NA	NA	False	NA	NA	NA	78192450	78213280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78192537_78192720_78192847_78194876_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
9065	chr8	-	4826	22	NNC	ENSMUSG00000000759.15	novel	3797	22	NA	NA	6	-22	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_8	35.7078089365284	41	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAACCATTATCTTT	NA	False	NA	NA	False	NA	NA	NA	12722117	12664300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12688987_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
9066	chr9	-	2627	19	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	424.446629575527	6	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGACCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	36678874	36643721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646715_36646771_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
9068	chr1	+	3687	14	NIC	ENSMUSG00000026439.15	novel	2856	14	NA	NA	0	178	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	114.801397843169	4	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCCAAAAGCTGATGTTAA	NA	False	NA	NA	False	NA	NA	NA	132405104	132433575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_132405266_132411789_132411816_132412483_132412540_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
9069	chr4	-	2849	25	Intergenic	novelGene_2157	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCCCGAGGCGGGCGTA	NA	False	NA	NA	False	NA	NA	NA	148666851	148642885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148643034_148644002_148644141_148645468_148645593_148646762_148646867_148647167_148647335_148647476_148647592_148648296_148648372_148648564_148648679_148649054_148649199_148649658_148649851_148650734_148650891_148652821_148652972_148653106_148653159_148654843_148654954_148657373_148657484_148657564_148657646_148657733_148657842_148660265_148660361_148660605_148660682_148662874_148662961_148663835_148663914_148664814_148664985_148665552_148665619_148666212_148666289_148666737
9070	chr5	-	2574	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	2	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963451	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937813_135938756_135940506_135963176
9071	chr11	+	3027	4	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53093	1616	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	148.963828569966	475	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATAATGATTTGAGAATT	NA	False	NA	NA	False	NA	NA	NA	62402526	62406859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62403098_62403729_62404611_62404760_62405978_62406501
9072	chr5	+	4196	9	NNC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	317.86858526756	31	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	NA	False	NA	NA	NA	73450145	73471284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73469198_73469401
9073	chr8	-	3720	9	FSM	ENSMUSG00000036120.11	ENSMUST00000075724.9	3609	9	-102	-9	-102	-3	multi-exon	TRUE	canonical	3	42	junction_5	11.7626261948597	277	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGAGTGTTTTGCTTG	9443	False	NA	NA	False	NA	NA	NA	70591906	70583446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588215_70588282_70588859_70588941_70590678_70590874_70591570
9074	chr1	-	2024	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2248.01552154872	39	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTTGCCAGACTTAATA	NA	False	NA	NA	False	NA	NA	NA	86287098	86278222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283920_86284781_86285175_86285828_86285946_86286927
9075	chr15	-	2972	14	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	18	-13	intron_retention	FALSE	canonical	1	29	junction_9	460.986092539453	21	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTCTTCCTTCGTC	2779	False	NA	NA	False	NA	NA	NA	77854979	77843210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77850409_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
9076	chr5	-	2407	15	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	6	combination_of_known_junctions	FALSE	canonical	1	1	junction_14	572.327311090785	2	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTAATAACTCTGTAGAG	2286	False	NA	-123	True	NA	NA	NA	138170114	138162855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168685_138169987
9077	chr10	+	2979	5	NNC	ENSMUSG00000006728.13	novel	1182	6	NA	NA	-1	-16	intron_retention	FALSE	non_canonical	0	0	junction_3	2321.05697905071	592	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTATGGTCTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	126899401	126903150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126900590_126900703_126900872_126901023_126901178_126901584_126901873_126901969
9078	chr2	+	3609	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	-923	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	772	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAACACTTAATAGGAAT	1936	False	NA	NA	False	NA	NA	NA	5850063	5875783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
9079	chr10	-	2742	21	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	426.549305473588	2	34	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTCCTGGTCTACCCT	NA	False	NA	NA	False	NA	NA	NA	127147523	127132089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133470_127133616_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
9080	chr14	-	3599	29	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	22	-6	intron_retention	FALSE	canonical	0	0	junction_8	100.690422704892	11	31	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATCATACTATAAGGAAG	9767	False	NA	NA	False	NA	NA	NA	55873119	55863186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866659_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
9081	chr6	-	3378	25	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.797263985984	8	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3396	False	NA	NA	False	NA	NA	NA	125168663	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145105_125148684_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
9082	chr7	+	3081	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	22	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	136.714465369698	11	27	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGTTCTAGTTTCTGGT	1012	False	NA	NA	False	NA	NA	NA	97130241	97190603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145023_97148755_97148807_97150176_97150266_97150934_97151012_97155281_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
9084	chr4	-	4337	29	FSM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	33	-2	14	-1	multi-exon	FALSE	canonical	3	748	junction_17	84.4073804080362	1	132	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTCTCCGTGTTCTGG	2	True	NA	NA	False	NA	NA	NA	41275102	41194313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
9085	chr11	-	2560	15	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	467.504119811597	10	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239136	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205674_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
9086	chr10	+	3633	14	NIC	ENSMUSG00000037608.17	novel	5437	13	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	11	junction_13	252.849161012751	15	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGAGCTTGGACAATTAT	2793	False	NA	NA	False	NA	NA	NA	20188217	20220354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797_20215879_20219803
9087	chr2	-	2893	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	-72	-701	-10	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	1735	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	156022168	155989158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
9088	chr12	+	3208	11	NIC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-6	-403	intron_retention	FALSE	canonical	3	2590	junction_5	183.02811259476	11	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATGCTGATAAATGTATG	NA	False	NA	NA	False	NA	NA	NA	17316589	17334368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17331071_17333200_17333298_17333938
9090	chr11	+	2522	13	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	41	-640	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_10	63.9811170059834	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTTTGGACTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	29476497	29494608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490822_29491340_29491482_29492344_29492510_29494269
9091	chr19	+	3640	23	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	4172	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	279.392763177042	1	92	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATAAAAAGGAGAAACAATA	6089	False	NA	NA	False	NA	NA	NA	8879660	8893989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892873_8893007
9092	chr10	+	4058	30	NNC	ENSMUSG00000039994.16	novel	4457	29	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_29	77.0709017731005	1	103	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	6674	False	NA	NA	False	NA	NA	NA	128068016	128088808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088060_128088148_128088461
9093	chr11	+	2597	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3964	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	9	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGAAAACTTCATCTGGC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55390891_55390983
9094	chr4	-	3256	19	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	180	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.470630609731	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	29	False	41124289	NA	False	NA	NA	NA	41124275	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114547_41114626_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117479_41119996_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
9095	chr12	+	5105	19	NNC	ENSMUSG00000042700.17	novel	7488	21	NA	NA	312	-7119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	47.872806012971	1	43	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAATTTCAAGGTAGAAG	NA	False	NA	NA	False	NA	NA	NA	82217111	82480615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_82217185_82281236_82281303_82358122_82358184_82387435_82387497_82387532_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462
9096	chr6	+	3270	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	-142	5	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	497	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCCATTGTCTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	47430695	47503078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
9097	chrX	-	2716	13	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	-64	5	at_least_one_novel_splicesite	FALSE	canonical	2	29	junction_12	529.767001981899	5	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAAAAACCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	100129690	100122821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126471_100126753_100126913_100127476_100127881_100128877_100129064_100129193
9098	chr6	+	626	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	60	17	60	-17	multi-exon	FALSE	canonical	3	1924	junction_1	0	9052	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTATTCTCTCCAAATGG	-15	True	NA	NA	False	NA	NA	NA	29467776	29470494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_29467974_29470065
9099	chr6	-	3014	16	ISM	ENSMUSG00000053470.14	ENSMUST00000167220.4	4853	26	25179	1	1632	-1	3prime_fragment	FALSE	canonical	3	336	junction_9	48.7462363219516	2	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAGATAATCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71584491	71565958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385
9101	chr5	+	3017	8	NNC	ENSMUSG00000014956.16	novel	5962	8	NA	NA	72	348	intron_retention	FALSE	non_canonical	0	0	junction_1	475.389378535627	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAATTAGTATTGGTTGTT	3146	False	NA	NA	False	NA	NA	NA	32616637	32650448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_32616677_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
9102	chr2	+	2415	17	NIC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	585.730790204638	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157120934	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_157121133_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
9103	chr2	-	3022	11	NNC	ENSMUSG00000027206.14	novel	2073	13	NA	NA	-5	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	296.558324786205	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTTTCTGTGCCTGTAT	NA	False	NA	NA	False	NA	NA	NA	125700921	125672240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125691649_125691774_125700855
9104	chr17	+	2398	7	NNC	ENSMUSG00000068039.14	novel	3419	10	NA	NA	34	34	intron_retention	FALSE	canonical	0	0	junction_1	1331.87207427073	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTCCTGCTG	NA	False	NA	-69	True	NA	NA	NA	13138523	13143988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13139345_13139675_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
9106	chr13	+	2446	11	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	6	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	57.4873899216167	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACATTTTTTTAAAGCT	NA	False	NA	NA	False	NA	NA	NA	84370438	84443966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84442721
9107	chr6	-	2668	8	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_6	289.868654281028	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTGTCTATTACTTG	NA	False	NA	NA	False	NA	NA	NA	72416539	72409782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72414363_72414432_72416328
9108	chr14	+	4641	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	3	-102	3	-7	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	1007	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGCAATACCTGTTTGC	9633	False	NA	NA	False	NA	NA	NA	47535728	47560654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
9109	chr2	-	1850	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	44	132	0	-132	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAATCTCAGGCCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	152185908	152179473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
9110	chr9	+	3766	17	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	2	2	intron_retention	FALSE	canonical	3	468	junction_2	44.1078224354819	3	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCCTCTGGCGTCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	108385260	108393130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389978_108390058_108390168_108390264_108390396_108390484_108391408_108391488_108391594_108391741_108391835_108391944_108392432_108392994
9111	chrX	-	2721	12	NNC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	0	-5	intron_retention	FALSE	canonical	2	30	junction_8	608.494837235411	1	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTGTAAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	100128978	100122832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126471_100126753_100126913_100127476_100127881_100128426_100128585_100128877
9112	chr2	+	2346	9	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	418.289896483288	99	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8592	False	NA	NA	False	NA	NA	NA	72306525	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315573_72315657_72316063
9114	chr14	+	4486	24	NNC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	-5	1	intron_retention	FALSE	non_canonical	0	0	junction_2	122.77052225276	1	94	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTCTCATTACTCGCGA	NA	False	NA	NA	False	NA	NA	NA	20724385	20744919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726222_20729627_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742051_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
9117	chr2	-	2382	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-22	-1	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	3	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTAGTGCTCCATTGCTT	3714	False	NA	NA	False	NA	NA	NA	154734773	154713338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
9118	chr11	+	5427	17	NNC	ENSMUSG00000018395.20	novel	3161	18	NA	NA	-5	2260	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	20.5472017559569	216	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCCTAATGTCTTTTAAA	914	False	NA	NA	False	NA	NA	NA	53458200	53495054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484190_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
9119	chrX	+	2930	26	NNC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	14	-90	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	331.113273669299	2	30	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACAGCAGCCGCAACAG	NA	False	NA	NA	False	NA	NA	NA	143101032	143152677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120131_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129747_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
9120	chr3	-	5101	10	NIC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	67	-8	intron_retention	FALSE	canonical	3	948	junction_5	63.1666422358987	7	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGTACCTGGCCCTGAT	NA	False	NA	NA	False	NA	NA	NA	157630621	157599892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157616578_157619236_157619369_157624062_157625750_157626591_157626674_157630502
9121	chr6	-	3117	12	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4200.14699467287	1	108	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705658_122706195_122707009_122707062_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716800_122716953_122717346_122717440_122719334
9122	chr5	-	4813	23	NNC	ENSMUSG00000029415.5	novel	5020	22	NA	NA	26	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.1648043138411	105	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCTGTGGCAAATCGTCC	NA	False	NA	NA	False	NA	NA	NA	92457822	92431885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92431986_92432114_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
9124	chr6	-	3660	23	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-2	-54	intron_retention	FALSE	non_canonical	0	0	junction_1	227.514712084463	2	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCAGA	29	True	NA	NA	False	NA	NA	NA	29609812	29540879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29540956_29541574_29541866_29543261_29543360_29551850_29551964_29554793_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565207_29565262_29565658_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
9125	chr13	+	3842	7	NNC	ENSMUSG00000046949.17	novel	3842	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	78.4807124217296	586	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCCTCTCATTTATATC	NA	False	NA	NA	False	NA	NA	NA	34148672	34172426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514_34163646_34165404_34165522_34166430_34166533_34169298
9126	chr4	+	1979	3	ISM	ENSMUSG00000029064.16	ENSMUST00000176308.2	812	4	1944	-1616	1944	0	3prime_fragment	FALSE	canonical	3	3030	junction_2	300	7	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	1040	False	NA	NA	False	NA	NA	NA	155639624	155643726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_155639689_155641627_155641744_155641927
9127	chr3	+	4524	4	FSM	ENSMUSG00000033883.12	ENSMUST00000197653.5	6689	4	105	2060	-40	-2053	multi-exon	FALSE	canonical	3	49	junction_1	1.4142135623731	92	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATCTTAGAGAAAGTTAA	NA	False	NA	NA	False	NA	NA	NA	36205270	36222431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204
9128	chr6	+	3379	23	NIC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	2	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	151.466686188064	1133	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTACTGTCGTGGTGGAG	6	True	NA	NA	False	NA	NA	NA	28480359	28888820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_28480642_28512833_28512984_28520143_28520265_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
9130	chr4	+	2522	14	NIC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	8	-371	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	581.926844260519	3461	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGGAGTCTCGTG	863	False	NA	NA	False	NA	NA	NA	129083702	129113029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129083866_129090622_129090770_129090905_129091082_129093813_129093948_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
9131	chr5	-	3128	5	NIC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	7	5	intron_retention	FALSE	canonical	3	685	junction_1	61.4247507117449	7	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAACAAAAACTACCGT	NA	False	NA	NA	False	NA	NA	NA	32942963	32893660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32895879_32896125_32896718_32922116_32922293_32931739_32931811_32942892
9132	chr3	-	4311	23	Antisense	novelGene_ENSMUSG00000001415.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCGGCCGCCATCGCT	7279	False	NA	NA	False	NA	NA	NA	88269632	88243625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88243804_88249163_88249269_88249752_88249870_88250184_88250343_88252668_88252760_88253751_88253841_88254823_88254901_88256445_88256574_88256681_88256748_88257318_88257530_88258001_88258139_88258282_88258885_88260265_88260443_88261179_88261256_88261834_88262013_88262882_88263043_88265958_88266017_88266330_88266491_88266851_88266943_88267634_88267710_88268057_88268198_88268329_88268636_88268701
9134	chr9	+	2411	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	114.603994757455	116	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGTCTCTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	108385257	108393134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391158_108391271_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
9135	chr14	-	2704	15	NIC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-8	-10	intron_retention	FALSE	canonical	3	685	junction_12	63.4469487534464	1009	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	4851	False	NA	NA	False	NA	NA	NA	54754826	54744653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
9136	chr10	+	2582	18	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4954	10678	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTCACCCCACTGCTTG	NA	False	NA	NA	False	NA	NA	NA	86526706	86541348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_86526856_86527558_86527611_86528001_86528159_86528248_86528325_86529238_86529381_86529783_86530023_86530212_86530480_86531336_86531405_86531521_86531602_86531689_86531830_86532584_86532698_86534180_86534305_86534449_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540259_86541175
9137	chr6	-	3336	8	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	2	-3	intron_retention	FALSE	canonical	0	0	junction_4	291.237472359108	1	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAACTGTGTCTATTAC	NA	False	NA	NA	False	NA	NA	NA	72416529	72409785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413287_72413399_72413513_72413977_72414101_72414353_72414432_72416328
9138	chr6	-	4215	30	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	35	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	161.253981690925	2	121	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3528	False	NA	NA	False	NA	NA	NA	125168531	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145706_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125149982_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
9139	chr1	+	4032	5	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	37	-4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	98.9709553353912	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTAGAGTCTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	152969262	152995003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_152969358_152969782_152969860_152987887_152987990_152988125_152988194_152991313
9140	chrX	-	3090	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3360	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGCCATGCCGTTAC	NA	False	NA	NA	False	NA	NA	NA	23227932	23085519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086936_23087068_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
9141	chr4	+	2770	14	NIC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-8	-1	intron_retention	FALSE	canonical	3	12	junction_3	200.30866713694	7	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTGTGTTCGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	124923842	124949172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124923988_124928030_124928116_124929007_124929103_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124947328_124947934_124948021_124948976
9142	chr1	-	2378	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-83	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2048.43442600273	3	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCAGACTTAATACTTC	NA	False	NA	NA	False	NA	NA	NA	86287205	86278218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278365_86278608_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
9143	chr3	-	4768	9	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	-27	-4	combination_of_known_junctions	FALSE	canonical	3	70	junction_8	23.3422230089595	188	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94922786	94913904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922630
9144	chr12	+	2520	23	NIC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	28	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	287.737214390934	96	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCTTGGTGTTGAAAC	8054	False	NA	NA	False	NA	NA	NA	76302214	76366572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76361174_76361283_76361722_76361876_76364380_76364475_76366354
9145	chr10	-	5990	14	FSM	ENSMUSG00000036676.15	ENSMUST00000058154.15	5993	14	3	0	0	0	multi-exon	FALSE	canonical	3	57	junction_8	14.4496677957759	169	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGATTGTCTTGTGATGT	NA	False	NA	NA	False	NA	NA	NA	100323209	100279763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776_100294898_100296821_100296971_100301882_100302136_100307190_100307364_100307776_100307893_100310236_100310337_100312418_100312638_100313666_100313885_100323023
9146	chr11	+	4243	19	NIC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	-27	-25	intron_retention	FALSE	canonical	3	8	junction_11	45.426239222244	2	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAAGTGTATTTAATG	2820	False	NA	NA	False	NA	NA	NA	78192422	78213258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78205283_78205530_78205625_78205786_78206117_78206334_78206469_78206725_78206868_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
9147	chr13	+	4242	9	ISM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	4775	0	4474	0	3prime_fragment	FALSE	canonical	3	204	junction_4	17.8308020010318	3	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	NA	False	NA	NA	NA	104320079	104339525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
9149	chr9	-	3895	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	3	-164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	77.9168787875901	2	32	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATGGAGACTTTCCAGG	6407	False	NA	NA	False	NA	NA	NA	44272938	44259388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272010
9150	chr8	-	2609	6	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-51	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2072.96680147078	6	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAATAAAACACTAGAAAT	NA	False	NA	NA	False	NA	NA	NA	43760068	43748118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43748732_43748799_43749173_43749261_43749574_43753664_43753743_43757512_43758069_43759391
9152	chr11	-	2110	12	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	1456	1191	-1026	2	3prime_fragment	FALSE	canonical	3	3830	junction_8	164.878918759312	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	NA	False	NA	NA	False	NA	NA	NA	106677902	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734
9153	chr8	+	3614	18	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-1504	-2095	intron_retention	FALSE	non_canonical	0	0	junction_8	792.740675471312	1	113	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111766853	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771627_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111780641_111780756_111780844_111781140_111781255_111781650
9154	chr14	+	4214	22	NNC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	0	-6	intron_retention	FALSE	canonical	0	0	junction_1	78.0005523557395	1	72	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGTATCCCTCTCATTA	NA	False	NA	NA	False	NA	NA	NA	20724403	20744912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724485_20729634_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
9155	chr10	-	2920	9	NIC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	8	-178	intron_retention	FALSE	canonical	3	625	junction_8	469.155624500016	10	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358247	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356976_127358156
9156	chr3	+	3124	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	29	4	29	-4	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	497	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAACCCTGCTTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	58484085	58500550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
9157	chr11	-	3321	13	NIC	ENSMUSG00000038909.17	novel	3470	14	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	258.98824244012	387	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	95201030	95165084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
9159	chr2	+	2875	9	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-34	-1	intron_retention	FALSE	canonical	3	23	junction_2	525.47187127381	5	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8629	False	NA	NA	False	NA	NA	NA	72306562	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72309957_72310063_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519
9161	chr6	-	2953	22	ISM	ENSMUSG00000025607.16	ENSMUST00000048774.13	3961	24	1834	854	1521	4	3prime_fragment	FALSE	canonical	3	177	junction_15	22.674668455551	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTTGCTATACTTGAA	NA	False	NA	NA	False	NA	NA	NA	30871840	30748406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781
9162	chr6	-	1164	1	NIC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	6383	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATACCAAGATACCTTCT	NA	False	NA	NA	False	NA	NA	NA	136791829	136790665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_136790700_136791800
9163	chr17	+	3725	24	NNC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	45	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	96.7453930557147	316	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCTCTGTGCTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	29879639	29922335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919910_29920058_29920458_29920568_29921127
9164	chr4	-	2783	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	194	1152	-4	226	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	62	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGTACCACTTAGTATT	NA	False	NA	NA	False	NA	NA	NA	131939420	131913374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
9165	chr8	+	2903	13	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	362.576993739108	2	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5066	False	NA	NA	False	NA	NA	NA	107329999	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387692_107388526_107388663_107390378_107390417_107395857
9166	chr17	-	900	1	Genic_Genomic	ENSMUSG00000024163.18	novel	NA	NA	NA	NA	425	111	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTGTTCAGGACTAACC	5210	False	NA	NA	False	NA	NA	NA	25135116	25134216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_25134200_25135100
9167	chr9	-	2825	1	Antisense	novelGene_ENSMUSG00000035443.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTATTGTGTGTGGCCA	5561	False	NA	NA	False	NA	NA	NA	26918629	26915804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_26915800_26918600
9168	chr17	-	3612	7	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_6	18.4541473808885	87	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTTTGTATTTTAC	NA	False	NA	NA	False	NA	NA	NA	22533781	22504851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507883_22508749_22508877_22511388_22511437_22528185_22528296_22528485_22528579_22532217_22532367_22533727
9169	chr1	+	3306	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	-97	4	-97	-4	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	698	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATTGTTTTGGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	180678594	180695674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
9170	chrX	-	3428	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	62	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	1	68	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATCCTTGTGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	149800256	149766144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149767559_149768929_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
9171	chr6	+	2758	15	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-9	-3	intron_retention	FALSE	canonical	0	0	junction_7	285.494352851688	5	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTTGCTGTTGTGTTTTT	5428	False	NA	NA	False	NA	NA	NA	125108862	125121713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109130_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118466_125120963
9172	chr9	+	3252	21	ISM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	8	5	8	-5	intron_retention	FALSE	canonical	3	669	junction_10	48.5267709620164	92	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGACTCTTGAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	98445791	98470430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813
9173	chr2	+	3506	14	NNC	ENSMUSG00000033411.17	novel	5053	13	NA	NA	-17	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	110.589223396138	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAAATATGTTACCTTT	NA	False	NA	NA	False	NA	NA	NA	121786923	121843075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043_121842841_121842897
9174	chr4	-	5490	27	FSM	ENSMUSG00000028960.21	ENSMUST00000103212.10	5626	27	132	4	14	2	multi-exon	TRUE	canonical	3	203	junction_22	27.7325828917206	247	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGCCTCCTGTGAGTCGT	NA	False	NA	NA	False	NA	NA	NA	149511074	149412876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_149414195_149414647_149414795_149415779_149415955_149419568_149419761_149421841_149421977_149427335_149427481_149428971_149429099_149432383_149432620_149435114_149435214_149435914_149436043_149437384_149437485_149439874_149440014_149442081_149442281_149443653_149443768_149444734_149444834_149444916_149445034_149445740_149445798_149449910_149449995_149452757_149452873_149455615_149455717_149457284_149457427_149465639_149465869_149468194_149468340_149469581_149469670_149471537_149471674_149483055_149483243_149510338
9175	chr18	+	2955	17	NIC	ENSMUSG00000003779.17	novel	3146	19	NA	NA	14	-2	intron_retention	FALSE	canonical	3	938	junction_11	89.7567676765936	2	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTGGATTCCAAATTTA	6707	False	NA	NA	False	NA	NA	NA	34758517	34765855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758695_34759768_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
9176	chrX	+	2993	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	80	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.226548859179	1	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799503	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799603_150810804_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
9177	chr11	+	2868	4	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53075	1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	132.705187037533	493	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	NA	False	NA	NA	NA	62402508	62406860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62402636_62402963_62403098_62403729_62405978_62406501
9178	chr8	+	3168	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	435.472836943909	3	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8824	False	NA	NA	False	NA	NA	NA	120637549	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678721_120679910_120680085_120681527_120681673_120682936_120683003_120683321
9179	chr9	+	3079	10	NIC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	1656	junction_1	101.161037734671	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	NA	False	NA	NA	False	NA	NA	NA	54493764	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
9180	chr8	+	3150	15	Antisense	novelGene_ENSMUSG00000033732.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	252	16	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCATGCCTGGCTTATG	112	False	NA	NA	False	NA	NA	NA	111537130	111553333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_111537714_111538022_111538125_111538607_111538754_111539596_111539692_111540249_111540468_111541161_111541288_111542534_111542692_111542786_111542992_111544174_111544350_111547337_111547492_111548097_111548226_111550008_111550148_111550793_111550953_111552133_111552287_111552723
9181	chr7	+	1956	1	ISM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	12756	10	10407	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	584	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAACCAGACTTGCTG	0	True	NA	NA	False	NA	NA	NA	44478267	44480223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44478300_44480200
9182	chr18	+	1036	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	-16	-5	-16	5	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	2816	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTATTTATTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	31922195	31929759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
9183	chr14	+	3434	11	Antisense	novelGene_ENSMUSG00000077797.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTGCGGTTCAACGTCA	1516	False	NA	NA	False	NA	NA	NA	30734395	30740971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30734590_30734677_30734749_30735125_30735523_30735609_30735751_30736007_30736980_30737226_30738414_30738785_30738864_30739012_30739127_30739234_30739372_30739766_30739824_30740885
9184	chr6	-	3071	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	72	29	-5	-29	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGCTGCCTCGTCATCT	9167	False	NA	NA	False	NA	NA	NA	88495815	88480589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
9185	chr2	+	3477	18	NNC	ENSMUSG00000027115.15	novel	3369	17	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	119.732573986181	10	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAACAGTTTGGTTTTC	1456	False	NA	NA	False	NA	NA	NA	109111162	109172085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109139286_109139482_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
9186	chr13	-	2412	13	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	507.884255186816	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498358	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481238_74487266_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
9187	chr2	+	3757	21	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	367.790059001056	1	157	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7262	False	NA	NA	False	NA	NA	NA	29779865	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813635_29815938_29816115_29816715_29816855_29820501
9188	chr14	-	3405	8	NIC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	336	intron_retention	FALSE	canonical	3	4955	junction_3	274.730888733848	13	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTCTTTAGTCTCCAT	NA	False	NA	NA	False	NA	NA	NA	36857252	36842444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36844184_36847116_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
9189	chr2	-	2613	14	NNC	ENSMUSG00000026925.17	novel	4147	10	NA	NA	2810	6893	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	49	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTTCTGCGGTCACTTCC	8069	False	NA	NA	False	NA	NA	NA	26286673	26279367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26279443_26279945_26280062_26280108_26280151_26280239_26280322_26280505_26280588_26281093_26281188_26281874_26281979_26282423_26282686_26282915_26283010_26283096_26283215_26283306_26283398_26283527_26283592_26285035_26285182_26285430
9190	chr7	-	4360	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	-286	-2494	11	-9	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	556	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTAAGTGGCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	128063365	128041509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
9191	chr18	+	3673	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	39	21	11	-21	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	1	123	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCCATTAAGAACCAAGTC	NA	False	NA	NA	False	NA	NA	NA	35251950	35387811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
9192	chr17	-	3095	11	FSM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	72	6	-41	0	multi-exon	FALSE	canonical	3	238	junction_4	23.9309423132479	686	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	26160950	26145400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
9194	chr10	+	3657	6	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	32107	0	28510	0	3prime_fragment	FALSE	canonical	3	377	junction_3	88.6760396048448	2	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGATTGCATGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	127960758	127965172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
9195	chr8	+	4646	13	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	26	0	intron_retention	FALSE	canonical	0	0	junction_4	447.143868222398	2	133	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8896	False	NA	NA	False	NA	NA	NA	120637621	120684296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673815_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120681673_120682936_120683003_120683321
9196	chr11	-	2777	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	84	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	999.809742231569	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5285	False	NA	NA	False	NA	NA	NA	88846207	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88827343_88827481_88827878_88832109_88832183_88834622_88834698_88837970_88838061_88843231_88843381_88846119
9197	chr10	-	2716	20	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	1	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	438.769236858393	4	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTGCAAGCCGAGCCCT	NA	False	NA	NA	False	NA	NA	NA	127147546	127132104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127145988_127146312_127146404_127147389
9198	chrX	-	3124	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	429.891717632346	1	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	NA	False	NA	NA	NA	23231290	23085524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086690_23086765_23087092_23094812_23094922_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
9199	chr17	+	2620	18	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	10	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	678.451483324278	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGCCGGGCAGTGGTG	509	False	NA	NA	False	NA	NA	NA	56610409	56630472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629554_56630392
9203	chr2	+	3502	9	NIC	ENSMUSG00000026977.18	novel	3594	10	NA	NA	12	-5	combination_of_known_junctions	FALSE	canonical	3	10	junction_8	119.982290359869	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGTTTGAACTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	60040268	60079550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60078233
9205	chr4	-	2560	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	-3	1	2	-1	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	711	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147726968	147696396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
9206	chrX	+	5461	6	FSM	ENSMUSG00000025860.16	ENSMUST00000026978.7	6834	6	876	497	876	-497	multi-exon	FALSE	canonical	3	86	junction_1	18.4347497948847	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTCTATTACACTCTTA	NA	False	NA	NA	False	NA	NA	NA	41183480	41198036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
9207	chr16	-	2231	13	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	19	113	intron_retention	FALSE	canonical	3	4287	junction_7	260.693133247161	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292728	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
9208	chr17	+	3050	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_4	457.311078175701	1	90	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4892	False	NA	NA	False	NA	NA	NA	87979988	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990114_87992871_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
9209	chr9	-	2251	9	ISM	ENSMUSG00000032580.13	ENSMUST00000194801.6	2691	20	10061	8	-480	-4	intron_retention	FALSE	canonical	3	487	junction_7	39.0704491911726	2	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGGTTTCCTGTGTC	7681	False	NA	NA	False	NA	NA	NA	107627701	107617702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906
9210	chr15	+	3098	9	Antisense	novelGene_ENSMUSG00000041815.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	32	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCCAACTCTCGCGACA	NA	False	NA	NA	False	NA	NA	NA	83010180	83033546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83012259_83013396_83013461_83015680_83015811_83016776_83016863_83017352_83017384_83017456_83017528_83019494_83019591_83022332_83022723_83033394
9212	chr11	+	1873	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1420.04582807956	6	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940625	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951682_22952214_22952402_22952816_22952931_22953136
9213	chr1	+	2782	21	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	-26	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_15	138.729548042225	1234	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAGCCTTGTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	45834636	45862781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857843_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
9214	chr5	-	2387	7	NNC	ENSMUSG00000066861.15	novel	1977	7	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	136.090656059359	51	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCGTCATGGTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	121025673	121014793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019947_121020133_121023835_121025096_121025442
9215	chr2	+	2866	2	Fusion	ENSMUSG00000065287.3_ENSMUSG00000027405.17	novel	779	3	NA	NA	17	4	intron_retention	FALSE	canonical	3	2327	junction_1	0	1	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCCAATAAAAACACAAAAC	NA	False	NA	NA	False	NA	NA	NA	130117732	130121204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_130120211_130120816
9216	chr3	+	2947	14	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-3	-5	intron_retention	FALSE	non_canonical	0	0	junction_7	371.321245629201	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATGGTAAGCAGTTTT	4846	False	NA	NA	False	NA	NA	NA	34074243	34124466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34104214_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
9217	chr18	-	2873	19	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	1844	5981	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAGGAACAGCTTTGTTCC	NA	False	NA	-12	True	NA	NA	NA	34765839	34758022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34758113_34758509_34758693_34759766_34759844_34760008_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351
9218	chr4	+	3228	9	NNC	ENSMUSG00000028252.21	novel	3484	13	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	178.87421383475	4	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTGTTTCTTTTTAA	2	True	NA	NA	False	NA	NA	NA	21727707	21750543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735465_21746339_21746430_21746655_21746775_21747482_21747577_21748136
9219	chr9	+	3466	10	NNC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	1	-1	intron_retention	FALSE	canonical	2	14	junction_1	201.300218027149	40	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGAACCTTTTATAGT	9123	False	NA	NA	False	NA	NA	NA	15217560	15228265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15218218_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15226428_15226678_15226737_15228184
9220	chrX	+	1609	8	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	50	2791	-13	-2753	5prime_fragment	FALSE	canonical	3	4366	junction_7	268.388007274877	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACAACCATCCTAAGAGA	NA	False	NA	NA	False	NA	NA	NA	105230755	105244514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762
9222	chr4	-	2489	13	NIC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-28	-6	combination_of_known_splicesites	FALSE	canonical	3	24	junction_10	276.521347377658	1467	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAATGGGCTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	132080944	132059239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132079432_132079555_132079973_132080010_132080907
9223	chr7	+	3745	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	-2	-1021	-2	1021	multi-exon	FALSE	canonical	3	986	junction_1	0	768	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCTTGTTCAGGATTGT	73	False	NA	NA	False	NA	NA	NA	44465509	44481257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
9224	chr12	-	2784	3	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	182	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGAGGTGAGAGGTTGGG	NA	False	NA	NA	False	NA	NA	NA	86568396	86516889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86517328_86535318_86535372_86566103
9225	chr3	+	4281	14	ISM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-4	4444	-1	-4436	intron_retention	FALSE	canonical	3	1060	junction_7	81.7515358232948	16	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGAAATTTTTTGTTTG	4855	False	NA	NA	False	NA	NA	NA	34074252	34119050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976
9226	chr7	+	4032	25	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	50.1767535540336	14	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGAGTGCCTGTGTGTCCT	543	False	NA	NA	False	NA	NA	NA	110628201	110655582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650793_110652585_110652686_110653020_110653134_110654565_110655222_110655277
9227	chr11	-	3169	20	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	47	-12	intron_retention	FALSE	canonical	0	0	junction_2	188.120018270885	1	55	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGATAAAAGAGATAACTTT	NA	False	NA	NA	False	NA	NA	NA	106146858	106139979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106140443_106140529_106140625_106140694_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
9228	chr2	+	3816	13	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9583	21317	-161	3508	internal_fragment	FALSE	canonical	3	161	junction_12	17.9945979548184	31	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTATTCAGCTACCACC	4635	False	NA	NA	False	NA	NA	NA	20524440	20794018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238
9230	chr2	+	1888	16	ISM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	252	4454	-115	-295	5prime_fragment	FALSE	canonical	3	1870	junction_1	170.821856525056	3	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGAGGTGAGGCTGGGAT	NA	False	NA	NA	False	NA	NA	NA	157121230	157163785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662
9231	chr8	-	3568	8	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	818.335194034766	8541	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAATTGTTTGGGATAT	NA	False	NA	NA	False	NA	NA	NA	94763642	94742123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743927_94745351_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
9233	chr15	+	4619	9	FSM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	3	-4	3	-3	multi-exon	FALSE	canonical	3	109	junction_2	19.5316249964001	458	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACACAGTATTTCTTATTT	NA	False	NA	NA	False	NA	NA	NA	5173375	5211377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_5173478_5190083_5190226_5194192_5194287_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
9235	chr14	+	2040	10	NNC	ENSMUSG00000021939.9	novel	801	6	NA	NA	163	1291	at_least_one_novel_splicesite	FALSE	canonical	2	34	junction_1	2359.23660492641	28	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTGCAGTTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	63360125	63380603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360296_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
9236	chr13	-	2733	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	490.936656831009	6	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTTGGTCAAGGT	NA	False	NA	NA	False	NA	NA	NA	74498358	74470377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479530_74480278_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
9237	chr2	+	3921	7	NNC	ENSMUSG00000027479.15	novel	7336	7	NA	NA	1374	-4748	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	432.285174650048	4	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTTCTGAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	153584895	153610482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153586375_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
9238	chr4	+	4571	18	FSM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	-6	19	-6	4	multi-exon	FALSE	canonical	3	529	junction_11	46.6085071760132	644	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAGACTGTTCATCAAAC	NA	False	NA	NA	False	NA	NA	NA	107224974	107273524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
9239	chr5	-	2092	13	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10678	-7992	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCACCCGGCCCGCCCCCG	3875	False	NA	NA	False	NA	NA	NA	129875191	129864436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129869004_129869080_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129874421_129874494_129874585
9240	chr10	-	4495	13	FSM	ENSMUSG00000020228.12	ENSMUST00000020449.12	4554	13	49	10	49	-10	multi-exon	FALSE	canonical	3	54	junction_7	7.32006375199925	237	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTTCATCGCCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	119948843	119919522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_119920879_119925312_119925781_119927513_119927658_119928388_119928594_119930131_119930192_119931005_119931097_119934086_119934242_119937302_119937445_119938674_119938850_119941063_119941943_119944790_119944961_119946737_119947134_119948589
9241	chr11	-	2778	17	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	438.472134234321	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTACTTTCTTTGACTG	NA	False	NA	NA	False	NA	NA	NA	75239111	75191180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205709_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
9242	chr1	-	2625	12	NNC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	34	-9	intron_retention	FALSE	non_canonical	0	0	junction_2	732.255893943419	12	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACCCTTCCTGATGGTTT	NA	False	NA	NA	False	NA	NA	NA	125363410	125320651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125321828_125322804_125322889_125324900_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
9243	chr19	+	3404	20	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-21262	-617	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	98	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGACCAACACGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	5323961	5345439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5324558_5324821_5325004_5325089_5325192_5329296_5329401_5329499_5329978_5333670_5333781_5333887_5333975_5334601_5334755_5336218_5336445_5336604_5336685_5336838_5336978_5337099_5337313_5337562_5337655_5337937_5338035_5338331_5338444_5341332_5341450_5343106_5343348_5344326_5344405_5345068_5345115_5345288
9244	chr1	+	3103	24	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	228.444803739082	121	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	2770	False	NA	NA	False	NA	NA	NA	171910101	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942703_171949629
9245	chr14	-	3362	10	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	25	0	intron_retention	FALSE	canonical	3	775	junction_5	84.9890334247257	45	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	30740921	30734390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735753_30736009_30736185_30736546_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
9246	chr7	-	4514	22	FSM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	-14	98	-14	1	multi-exon	FALSE	canonical	3	335	junction_6	41.4509518092853	355	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTAGTGGCCATTGTTTC	NA	False	NA	NA	False	NA	NA	NA	80184881	80104838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336_80164439_80184790
9247	chr13	-	3631	7	NNC	ENSMUSG00000113204.2	novel	1703	7	NA	NA	4	516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	41.7638865794627	7	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCTATATTTCTGACTC	5222	False	NA	NA	False	NA	NA	NA	74765425	74752547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74755025_74755276_74755855_74757240_74757302_74758318_74758446_74759382_74759441_74760842_74761068_74765320
9248	chr7	+	3844	9	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	-14	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.608532238248	13	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACTATAGCGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	12568673	12584507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12568748_12568849_12569092_12569373_12569455_12569881_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
9249	chr1	+	2527	9	NIC	ENSMUSG00000025903.15	novel	660	8	NA	NA	-55	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	268.615896774558	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4878404	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_4878589_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
9250	chr4	-	2732	11	ISM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	17314	21	-815	-21	3prime_fragment	FALSE	canonical	3	1463	junction_10	183.712710502023	28	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTCATTTCTATACCCT	NA	False	NA	NA	False	NA	NA	NA	129419192	129409917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038
9253	chr8	-	4123	23	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	153.164775151167	2	106	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCATGTGTCGTGCCCC	8141	False	NA	NA	False	NA	NA	NA	120285474	120234889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262028_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268863_120269463_120269668_120272722_120272981_120274138_120274625_120285384
9254	chr1	-	4292	21	NNC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	57.0327975817424	14	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	NA	False	NA	NA	NA	128030176	127881920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985940_127986065_128019579_128019748_128029989
9255	chr18	-	3960	28	FSM	ENSMUSG00000044252.19	ENSMUST00000074352.11	3956	28	0	-4	0	4	multi-exon	FALSE	canonical	3	91	junction_13	124.793898676083	505	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGTTGATATTGTAACC	NA	False	NA	NA	False	NA	NA	NA	13074898	12888366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
9257	chr7	-	3431	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_14	311.935527381269	6	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143153793	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143129343_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
9258	chr5	+	2007	11	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1339.88544286443	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	300	False	NA	NA	False	NA	NA	NA	77099167	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099279_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77115007_77115130
9259	chr6	+	4823	11	NNC	ENSMUSG00000035158.16	novel	2113	10	NA	NA	16096	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	24.9897979183506	116	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTGTTGACCAGTTGT	4131	False	NA	NA	False	NA	NA	NA	97933974	97998309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_97934147_97934286_97934422_97935689_97935824_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983101_97983159_97987355_97987432_97990629_97990778_97994734
9260	chr2	+	2355	16	NIC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	37	-5	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	600.73997332919	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCAGTGTTGATGGAGCC	NA	False	NA	NA	False	NA	NA	NA	157121015	157167971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_157121256_157125503_157125698_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
9261	chr19	-	2018	8	NIC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-53	-1	combination_of_known_splicesites	FALSE	canonical	3	14	junction_6	1150.5794813298	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCATTGCCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	15902347	15882494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15898299_15898361_15902227
9262	chr19	+	3732	25	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	-21	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	407.154036848736	1	84	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGGATGTCTGAATTA	1842	False	NA	NA	False	NA	NA	NA	8875413	8894032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879999_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892070_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988_8893413_8893520
9264	chr6	-	2368	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	256.052619353037	231	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTGGCATCTTGAAAG	7	True	NA	NA	False	NA	NA	NA	30509712	30482418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505966_30506631_30506917_30508452_30508512_30508664_30508802_30509683
9265	chr9	-	3725	22	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_21	111.389126107381	356	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7615	False	NA	NA	False	NA	NA	NA	107749918	107650757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107738821_107738929_107749847
9266	chr17	+	1300	6	Antisense	novelGene_ENSMUSG00000019579.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCAGGACCACCGCAGT	NA	False	NA	NA	False	NA	NA	NA	56483077	56490844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_56484004_56484698_56484772_56485263_56485348_56486365_56486426_56489664_56489718_56490740
9267	chr13	+	2104	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-3	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	582.962168583863	37	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588124	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610065_3611925_3612038_3614539_3614685_3614858_3614914_3614995
9268	chr8	-	2277	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	870.533721345704	10	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGCTTGTATGGTACT	NA	False	NA	NA	False	NA	NA	NA	26337715	26306915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308614_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
9269	chr7	-	3540	28	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	271.708085913204	1	125	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28038192	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015155_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023214_28023317_28023408_28025374_28025627_28028127_28028215_28028675_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
9270	chr8	-	1671	8	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	454.096816072682	103	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTATTGTGTCTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	85573498	85568721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569362_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
9272	chr15	-	2877	4	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1026.97711756397	2	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAGTGAGTCTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	38300962	38294658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296409_38296858_38297595_38297865_38298097_38300802
9273	chr9	-	2707	7	Antisense	novelGene_ENSMUSG00000025651.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	2.23606797749979	1	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAGTCTGCGTGCCAGA	NA	False	NA	NA	False	NA	NA	NA	108778128	108773548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108773954_108774424_108776120_108776401_108776547_108776664_108776826_108776922_108777017_108777616_108777699_108778003
9275	chr11	-	2055	4	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-153	1146	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAGAATAGATTT	NA	False	NA	NA	False	NA	NA	NA	48644694	48641547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48643845_48643931_48644153_48644311
9276	SIRV7	-	2304	4	NNC	SIRV7A	novel	2462	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2086.24846714543	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147923	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3115_114794_114989_147608
9277	chr9	-	6284	9	FSM	ENSMUSG00000060510.15	ENSMUST00000174462.8	6283	9	-1	0	-1	0	multi-exon	FALSE	canonical	3	20	junction_8	12.7156399760295	140	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTAATGTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	20432714	20406363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
9278	chr5	+	3870	25	NNC	ENSMUSG00000029407.11	novel	3898	24	NA	NA	-8	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	131.747443576294	8	19	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCATTGTTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	92285788	92350659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349105_92349145_92349210_92349715
9279	chr2	-	2878	18	NNC	ENSMUSG00000027620.17	novel	2127	18	NA	NA	3	-16	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_13	846.337082223983	461	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTCTGAAAAAGGCCACA	NA	False	NA	NA	False	NA	NA	NA	156022101	155989184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156012250_156012402_156014747_156014943_156019255_156019306_156021096_156021161_156021806
9280	chr5	+	2163	8	NIC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-48	0	intron_retention	FALSE	canonical	3	3177	junction_2	193.023631840714	4	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	708	False	NA	NA	False	NA	NA	NA	77099575	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
9281	chr2	-	3561	18	NIC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	-13	-42	combination_of_known_junctions	FALSE	canonical	1	3	junction_15	104.018962870614	4	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAATATATCTATGTAT	NA	False	NA	NA	False	NA	NA	NA	155953842	155913808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915582_155915718_155915913_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155940149_155940293_155945268_155945350_155953705
9282	chr9	-	3110	18	NIC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-2	0	intron_retention	FALSE	canonical	3	273	junction_15	379.318137102549	760	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64080190	64044425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
9283	chr10	-	3143	7	ISM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	-29	0	-28	0	intron_retention	FALSE	canonical	3	682	junction_2	229.276155662894	37	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8219	False	NA	NA	False	NA	NA	NA	128540928	128533812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794
9285	chr2	-	5083	27	FSM	ENSMUSG00000036893.18	ENSMUST00000147147.8	5953	27	12	858	-4	9	multi-exon	FALSE	canonical	3	34	junction_23	50.1601134592868	203	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTACTTTAAATGGAGTT	9602	False	NA	NA	False	NA	NA	NA	24809614	24680797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753942_24767466_24767639_24774157_24774715_24777014_24777082_24809565
9286	chr16	-	1806	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	155	113	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	1301.4182216932	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292437	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292331
9287	chr10	+	2353	12	NNC	ENSMUSG00000006498.17	novel	2369	13	NA	NA	10	3	intron_retention	FALSE	non_canonical	0	0	junction_3	494.377929513528	4	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1571	False	NA	NA	False	NA	NA	NA	79690448	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694653_79695510_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
9288	chr16	+	4815	8	FSM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	105	2	0	-2	multi-exon	FALSE	canonical	3	74	junction_7	6.62093155786084	180	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGTGCCACTTGGAT	NA	False	NA	NA	False	NA	NA	NA	16714437	16745226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_16714489_16721187_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16740326_16740421_16741503
9289	chr16	+	3258	11	Antisense	novelGene_ENSMUSG00000034064.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAATCATGAGCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	38345521	38375971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_38347143_38347937_38347995_38349805_38349975_38352145_38352207_38354994_38355186_38358267_38358327_38363197_38363322_38366110_38366249_38368801_38368946_38369705_38369795_38375366
9290	chr3	+	2873	9	NNC	ENSMUSG00000027601.14	novel	1574	9	NA	NA	-17	-39	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	465.073381306649	1438	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTAAGCTGTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	19242411	19274942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19266817_19266915_19269634_19269868_19271343_19271588_19272325_19272486_19273201
9292	chr10	+	2637	17	NIC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	243.807012563216	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTATTGCAAAAATGTG	NA	False	NA	NA	False	NA	NA	NA	21171912	21244781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21172076_21175076_21175143_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
9294	chr5	-	2239	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	564	159	-40	-142	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACACGGATCACCTTTGTC	2280	False	NA	NA	False	NA	NA	NA	138170120	138163003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
9296	chr7	-	4437	13	NNC	ENSMUSG00000043262.17	novel	4616	12	NA	NA	8	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	22.1773157377834	185	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGACTATCTGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	46608202	46572969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46575334_46575433_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
9297	chr16	+	3603	15	Antisense	novelGene_ENSMUSG00000022673.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	120	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCCGTCATACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	15441455	15454646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_15442633_15443424_15443559_15443899_15444122_15445497_15445718_15446453_15446600_15447180_15447503_15448105_15448387_15449561_15449684_15449980_15450202_15452302_15452444_15452914_15453011_15453095_15453190_15453856_15453960_15454050_15454216_15454487
9299	chr7	-	4827	13	FSM	ENSMUSG00000030850.18	ENSMUST00000216011.2	1680	13	-83	-3064	-14	-1	multi-exon	FALSE	canonical	3	14	junction_6	69.1801191737112	199	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTCGGCCGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	130121274	129993223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
9301	chr11	-	1788	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	25	-3487	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	717.228520068743	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACCTCTTCCTTGCATTC	5226	False	NA	NA	False	NA	NA	NA	88846266	88818332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88818754_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
9302	chr14	-	2393	8	NNC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	49	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	1641.7548102999	2	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCTGTTAGAAGCTGG	8833	False	NA	NA	False	NA	NA	NA	52341377	52311006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313096_52314859_52315021_52318716_52318772_52319290_52319361_52321571_52321849_52341345
9303	chr2	+	4054	12	NIC	ENSMUSG00000036646.14	novel	3755	13	NA	NA	-2	-14	intron_retention	FALSE	canonical	3	302	junction_8	32.9823393764572	354	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTCAGCAAGCTGTG	3996	False	NA	NA	False	NA	NA	NA	25222771	25242210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238704_25239181_25239380_25239462_25239595_25240373
9305	chr5	+	4904	10	FSM	ENSMUSG00000029636.12	ENSMUST00000016143.9	5196	10	292	0	292	0	multi-exon	FALSE	canonical	3	97	junction_1	19.5037191768236	172	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTCTGCTTATTTATA	NA	False	NA	NA	False	NA	NA	NA	146322086	146410425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029
9306	chr4	-	3511	14	NNC	ENSMUSG00000037443.14	novel	3893	14	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	114.816344217225	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	133914361	133857168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133858480_133859591_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
9307	chr6	-	3083	20	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-6	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	200.869288130683	2	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGGGCTGACTGGTTT	7899	False	NA	NA	False	NA	NA	NA	124806404	124791994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798288_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
9309	chr19	+	3787	10	NNC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	0	78	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	76.1460584811993	57	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGATTCTGCATTGAATAGA	NA	False	NA	NA	False	NA	NA	NA	10502629	10525095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510497_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
9310	chr4	+	5915	12	FSM	ENSMUSG00000029009.18	ENSMUST00000097788.11	2652	12	-1	-3262	-1	-80	multi-exon	FALSE	canonical	3	10	junction_1	31.6729151439997	94	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAAAACCCAAATTTCT	NA	False	NA	NA	False	NA	NA	NA	148123532	148143925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_148123590_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
9311	chr10	-	3097	13	Antisense	novelGene_ENSMUSG00000037608.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGGGGCGTGGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	20216104	20188217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20188349_20193751_20193856_20197746_20197861_20198706_20199407_20199472_20199613_20200883_20201550_20201673_20201844_20203845_20203952_20205050_20205139_20207829_20208005_20209134_20209319_20215454_20215665_20215795
9312	chr1	-	3845	7	ISM	ENSMUSG00000042772.16	ENSMUST00000073441.13	5767	22	56882	4	3180	-3	3prime_fragment	FALSE	canonical	3	176	junction_5	44.8122627066397	3	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGATCGGTGTGTAGAGG	NA	False	NA	NA	False	NA	NA	NA	152721491	152712749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963
9313	chr9	+	3452	10	Intergenic	novelGene_1077	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAGTGAGACAGGGCTG	NA	False	NA	NA	False	NA	NA	NA	58125853	58157065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58126011_58126792_58126953_58127105_58127853_58128997_58129152_58136640_58136691_58137110_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156825
9314	chr5	-	3492	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	1	98	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963512	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938254_135938340_135940506_135963176
9315	chr2	+	3102	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	-23	951	-23	-951	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	549	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCCTGATATGTGGTTA	NA	False	NA	NA	False	NA	NA	NA	29825414	29849432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
9316	chr3	-	4209	6	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	59.8351067518058	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAACCCTTTTATTGCTT	NA	False	NA	NA	False	NA	NA	NA	35986985	35946257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975119_35975337_35986933
9318	chr10	+	4000	21	NNC	ENSMUSG00000036875.16	novel	4122	21	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	86.7407631970114	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATAAACTTCACTGAGTCA	NA	False	NA	NA	False	NA	NA	NA	62782870	62809956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791177_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554_62805738_62807622_62807770_62809029
9319	chr17	-	2839	12	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	1762	junction_11	226.146116738056	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906496	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
9320	chr5	-	2776	13	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	0	intron_retention	FALSE	canonical	0	0	junction_2	596.153987145007	1	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2286	False	NA	-123	True	NA	NA	NA	138170114	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164167_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138167210_138167359_138167736_138167821_138167987_138168578_138168659_138169987
9321	chr4	-	1408	5	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	-391	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	848.479817084649	22	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	-9	True	NA	NA	False	NA	NA	NA	41094839	41092726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41093886_41093929_41094000_41094265_41094385_41094700
9322	chr8	-	2206	6	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-51	-15	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	2088.03932913152	506	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAATAAAACACTAGAAAT	NA	False	NA	NA	False	NA	NA	NA	43760068	43748118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460_43758596_43758716_43758980_43759877
9323	chr15	-	2754	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	972.418891219211	5	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	38300943	38294656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38295445_38295727_38296409_38296858_38297772_38297865_38298097_38300802
9324	chr8	-	2694	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	18	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1850.90590995329	22	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43759955	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43758069_43759467
9325	chr10	-	4848	7	FSM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-219	-1604	-219	1166	multi-exon	FALSE	canonical	3	87	junction_6	21.5303403492735	246	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCCGCACCCAACCCTG	NA	False	NA	NA	False	NA	NA	NA	67972675	67930679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
9326	chr9	+	2904	4	Antisense	novelGene_ENSMUSG00000004661.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	151	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTACGGTTGCCATCGATG	21	False	NA	NA	False	NA	NA	NA	57697635	57703979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_57699967_57702216_57702320_57703390_57703632_57703750
9327	chr17	+	2010	5	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	858.014677904755	4	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	29251646	29261871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29260228_29260268_29260357
9329	chr4	-	3464	7	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	51	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	517.136802231501	6	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGATTCTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000074	134941280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134943937_134944539_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
9330	chr1	+	2659	23	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-2046	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	221.95589987113	11	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCCTGCTTGCCGTT	5769	False	NA	NA	False	NA	NA	NA	171925256	171949889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946485_171949618
9331	chr5	-	3163	4	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	110	junction_3	449.79575611851	137	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	NA	False	NA	NA	NA	100186768	100182579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100185076_100185426_100185589_100185671_100185841_100186432
9332	chr9	-	5423	5	NIC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	20	-17	intron_retention	FALSE	canonical	3	213	junction_4	35.9609162842106	6	92	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGGATACAGAGTGAAGAG	8971	False	NA	NA	False	NA	NA	NA	57460026	57451555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57452222_57452477_57452687_57453676_57458057_57459429_57459558_57459986
9333	chr9	-	3934	11	NNC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	9	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	198.819239511673	9	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGCTGTATGCCACATT	NA	False	NA	NA	False	NA	NA	NA	75466930	75404989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75451951_75452229_75466781
9335	chr14	+	3461	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-29	-2	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	105.930165675316	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTATTGGTTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	56640124	56726890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56640210_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
9336	chr14	-	4001	27	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	256	-27	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	314.37180715849	1	127	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	52434617	52397897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52398287_52398649_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411563_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
9337	chrX	+	1891	10	NIC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	81	-10	intron_retention	FALSE	canonical	3	3907	junction_9	360.180853063541	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGGAAGTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	105230849	105247295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246542_105246844
9338	chr12	-	2768	11	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_9	772.722492231202	1638	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	NA	False	NA	NA	NA	108860074	108825955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854297_108854368_108854408_108854475_108859994
9339	chr17	-	1515	4	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGCAGCATCTCGGGGA	2415	False	NA	NA	False	NA	NA	NA	29261715	29255400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29255417_29259733_29259786_29260178_29260265_29260354
9340	chrX	-	3970	3	NNC	ENSMUSG00000051220.3	novel	5302	2	NA	NA	4	-1244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.5	13	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTGTTTCCATTCATT	NA	False	NA	NA	False	NA	NA	NA	101200693	101186565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101187482_101187565_101190440_101200513
9341	chr17	-	2058	1	Intergenic	novelGene_100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACCAGATGCCCCAGC	9426	False	NA	NA	False	NA	NA	NA	24241963	24239905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_24239900_24242000
9342	chr4	-	5103	3	ISM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	8	6	8	-6	intron_retention	FALSE	canonical	3	1694	junction_1	175	13	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAACTTCTTTTTGTGTG	7	True	NA	NA	False	NA	NA	NA	41098175	41092727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41093703_41093781_41094000_41094265
9343	chr1	+	2965	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	-12	0	-12	0	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	1414	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	45834313	45862779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
9344	chr9	+	2989	6	NNC	ENSMUSG00000032092.6	novel	1175	6	NA	NA	595	12	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	209.62404442239	14	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTTGCTTACAAACAAAT	NA	False	NA	NA	False	NA	NA	NA	44954588	44965325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44954829_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
9345	chr5	-	2706	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	185	1126	-1	-4	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	1069	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGGCCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	30359975	30324427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
9347	chr8	+	2688	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-24	-766	multi-exon	FALSE	canonical	0	0	junction_5	531.296677949336	66	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAATAGGTGTGGCACCA	NA	False	NA	NA	False	NA	NA	NA	19834737	20045122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20043528_20044904
9348	chr11	-	4298	18	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	14813	0	-1253	0	3prime_fragment	FALSE	canonical	2	202	junction_15	53.9610265612437	111	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	NA	False	NA	NA	NA	69634650	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628
9349	chr6	-	3252	8	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	54	0	intron_retention	FALSE	canonical	0	0	junction_4	291.237472359108	2	83	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTGTCTATTACTTG	NA	False	NA	NA	False	NA	NA	NA	72416469	72409782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413260_72413399_72413513_72413977_72414101_72414353_72414432_72416328
9350	chr15	+	2637	10	NIC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-2267	0	intron_retention	FALSE	canonical	3	1727	junction_4	127.972219207486	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81789012	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81798561_81798828
9351	chrX	-	3410	15	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	1	-6190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	33.2617939801134	1	94	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCTCATGGGGGCAGTAG	NA	False	NA	NA	False	NA	NA	NA	49724179	49658191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49659169_49661891_49662022_49662100_49662229_49666747_49666902_49669457_49669827_49670279_49670434_49673555_49673725_49680801_49680963_49684337_49684606_49687000_49687166_49689620_49689776_49715313_49715387_49716083_49716128_49719767_49719873_49723821
9352	chr8	+	2369	6	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	20	1759	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1371.33225733226	14785	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTGGTTTCTTTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	112667354	112682003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946_112680081_112680759_112680950_112681317
9353	chr6	+	3158	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	3	-600	0	597	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	915	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATACCTCCTTTCTATTAT	0	True	NA	NA	False	NA	NA	NA	30738051	30749061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
9354	chr16	-	2834	21	Antisense	novelGene_ENSMUSG00000006998.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.653834841531101	2	61	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGCCGGCCTGCTGCGCG	NA	False	NA	NA	False	NA	NA	NA	20482161	20470457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20470599_20470990_20471050_20471341_20471506_20473295_20473418_20473565_20473791_20474000_20474162_20474306_20474452_20474628_20474691_20475290_20475441_20475648_20475722_20476235_20476359_20476722_20476810_20478153_20478300_20478418_20478526_20478701_20478850_20479089_20479173_20480311_20480500_20480596_20480658_20480839_20480978_20481391_20481492_20481810
9356	chr11	-	3457	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	81	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	261.421985581654	1	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAACCTTGAGTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	88755331	88721622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736430_88736644_88736692_88755222
9357	chr2	+	2605	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	9	9	intron_retention	FALSE	canonical	3	132	junction_7	865.806034860003	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAACACAAAACCAGAT	NA	False	NA	NA	False	NA	NA	NA	130116420	130121209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120332
9358	chr1	+	3124	11	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	12009	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	132.338240882974	3	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	-1	True	NA	NA	False	NA	NA	NA	132417388	132433397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421834_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
9359	chr2	+	1996	7	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-1728	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	452.137669545706	2	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	72312179	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72312293_72312772_72312851_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
9360	chr19	-	2966	19	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	358.979572306466	4	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCACAGTTCGTTTTC	NA	False	NA	NA	False	NA	NA	NA	40576832	40538702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40538867_40539284_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40576753
9361	chr4	+	2861	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-258098	2576	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	127.689401805057	128	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	8145	False	NA	NA	False	NA	NA	NA	147318775	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147318928_147576859_147577009_147592042_147592098_147595209_147595337_147596801_147597216_147597970_147598436_147599020
9363	chr10	+	2918	12	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_8	496.927368855203	1	70	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1621	False	NA	NA	False	NA	NA	NA	79690498	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698280_79698376_79698486_79698704_79698811_79698890_79698978
9364	chr11	-	3856	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	23	0	intron_retention	FALSE	canonical	2	46	junction_3	619.435764762309	2	103	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714811	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96711343_96712076_96712236_96712929_96713113_96714383
9366	chrX	+	3095	15	NNC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	0	-3	intron_retention	FALSE	canonical	2	4	junction_6	135.919712946088	7	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCGACTACCTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	47345773	47371327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361006_47361060_47361676_47361797_47361898_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
9367	chr5	-	3357	16	NNC	ENSMUSG00000042508.17	novel	3498	17	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	83.6528275407087	1	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGATTTTGAGCCATGC	NA	False	NA	NA	False	NA	NA	NA	9211721	9168872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200467_9201797_9201919_9211613
9368	chr9	-	4151	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	-26	-1459	-11	1459	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	1002	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGAAATGCCATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86453906	86434970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
9369	chr9	+	4634	7	Intergenic	novelGene_1079	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	56	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACTGAGCGAGAGATT	NA	False	NA	NA	False	NA	NA	NA	58126667	58157021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127848_58128997_58129152_58136640_58136691_58137110_58137914_58140437_58142217_58154257_58154725_58156820
9371	chrX	+	2405	18	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	9	-479	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	944.319908699058	1	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGATGTAGCCATCCTGG	NA	False	NA	NA	False	NA	NA	NA	20524668	20548939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534721_20538242_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
9372	chr11	+	2934	17	NNC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	14	1205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	221.185221802339	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCATGGAAGCAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	4110368	4130624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4110551_4111045_4111077_4111126_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
9373	chr4	-	3220	8	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-16	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	143.031893118212	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTTTTGTTTGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	126954895	126941375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953397_126954825
9374	chr8	+	2996	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	22	-34	-17	34	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	633	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTGTGTGCAACAAAGAG	5142	False	NA	NA	False	NA	NA	NA	125589793	125616830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
9376	chr6	-	2464	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	89	3	89	-3	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	1	80	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8574	False	NA	NA	False	NA	NA	NA	145021821	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
9377	chr6	-	2600	10	NNC	ENSMUSG00000004980.17	novel	1542	11	NA	NA	-8	-8	intron_retention	FALSE	canonical	0	0	junction_9	3261.10189285087	7	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATCCAAATTACTTGGT	NA	False	NA	NA	False	NA	NA	NA	51446882	51438111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439561_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51446650
9379	chr16	-	2988	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-7	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	296.566912506689	6	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8103	False	NA	NA	False	NA	NA	NA	4867734	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4831952_4832272_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
9380	chr2	+	2707	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-46	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	401.76006812991	3	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTATGTCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	84867531	84877456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873318_84874715_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
9381	chr19	+	3764	25	Intergenic	novelGene_1278	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	42	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGGGAGGGGGAAGTGG	341	False	NA	NA	False	NA	NA	NA	41934251	41969566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41935546_41936129_41936188_41936655_41936752_41937889_41938030_41938205_41938276_41938418_41938523_41939190_41939291_41940845_41941004_41942109_41942261_41942359_41942453_41942903_41942985_41943169_41943298_41943556_41943638_41943859_41944034_41944259_41944403_41944949_41945029_41945580_41945657_41946298_41946385_41951240_41951300_41951387_41951518_41951839_41951910_41952301_41952382_41952759_41952843_41954652_41954752_41969435
9382	chr10	+	2716	6	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	664.052708751346	1	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTCTTGATCAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	41395496	41407027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402870_41404759
9383	chr19	+	2736	12	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	0	74	intron_retention	FALSE	canonical	0	0	junction_10	344.256463115356	22	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGGTAATAATTTTCCC	244	False	NA	NA	False	NA	NA	NA	46064408	46072974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067461_46067569_46067698_46068346_46068613_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
9384	chr10	+	2464	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	85	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	272.669980686079	28	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7075	False	NA	NA	False	NA	NA	NA	60113534	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60137737_60137836
9385	chr11	-	5874	20	Fusion	ENSMUSG00000085765.2_ENSMUSG00000001323.18	novel	3183	8	NA	NA	-125100	-14776	multi-exon	FALSE	non_canonical	0	0	junction_1	0	170	80	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCGCGCGCAGCCAGGAAA	NA	False	NA	NA	False	NA	NA	NA	75055274	74816703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_74816828_74819816_74821578_74822403_74822594_74823164_74823278_74825820_74825926_74826182_74826262_74836345_74836457_74836830_74837046_74872677_74872739_74880894_74881039_74920177_74920258_74929437_74929554_74932691_74932862_74944585_74944788_75030016_75030199_75033584_75033728_75046984_75047133_75049995_75050211_75050646_75050731_75053643
9386	chr16	-	3523	7	NIC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-21	-14	intron_retention	FALSE	canonical	0	0	junction_6	1043.39468669446	176	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGTGTAAAGTCGCT	1000	False	NA	NA	False	NA	NA	NA	11021149	11010847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_11011602_11012323_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
9387	chr13	-	2688	4	Antisense	novelGene_ENSMUSG00000113690.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGCAGGGGAAACAAGG	NA	False	NA	NA	False	NA	NA	NA	62321362	62277738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62277843_62317254_62317380_62317564_62317629_62318967
9388	chr17	-	3056	6	NIC	ENSMUSG00000024026.14	novel	1764	8	NA	NA	-4	-4	intron_retention	FALSE	canonical	3	13	junction_2	1288.4467548176	12	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACATAAAGGTCTGGGCA	NA	False	NA	NA	False	NA	NA	NA	30831580	30811844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_30813201_30815347_30816617_30816778_30816847_30819012_30819154_30822993_30823077_30831441
9390	chr2	+	4941	9	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-47	33	intron_retention	FALSE	canonical	0	0	junction_8	1287.22035798071	14	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCCTTGGTAAGGGGCT	NA	False	NA	NA	False	NA	NA	NA	162896559	162922732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896724_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162917696_162919706_162919810_162921513_162922092_162922334
9391	chr12	+	2741	16	NNC	ENSMUSG00000004789.11	novel	2259	16	NA	NA	43	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	117.105460542576	1	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACAGGGCTCCGGGATCT	NA	False	NA	NA	False	NA	NA	NA	85157709	85180856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85172771_85172858_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
9393	chr8	+	1952	7	ISM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	29	-22	29	13	intron_retention	FALSE	canonical	3	804	junction_1	205.126519223841	2676	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCTAAGCCAGCATTT	5263	False	NA	NA	False	NA	NA	NA	34222098	34267214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971
9394	chr12	+	3345	7	Fusion	ENSMUSG00000097451.12_ENSMUSG00000084549.3	novel	2352	8	NA	NA	-430	-11	intron_retention	FALSE	canonical	0	0	junction_4	238.812339156362	11	44	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCTATGACTAAAAAAAGT	5910	False	NA	NA	False	NA	NA	NA	109615608	109628132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_+_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109624486_109624556_109626156_109626242_109627179
9396	chr19	+	2444	18	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	13	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	789.693072521804	25	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAGAAGAAACTCTTATT	679	False	NA	NA	False	NA	NA	NA	10582999	10607174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600803_10606969
9397	chr15	-	2444	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1581.54728067814	5	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	378	False	NA	NA	False	NA	NA	NA	36609216	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606146_36608894
9401	chr1	+	3860	29	NNC	ENSMUSG00000041763.15	novel	4631	29	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	102.542475022175	2	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAGAACTCAGTGGCGT	3345	False	NA	NA	False	NA	NA	NA	43973207	44041493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_43973414_43979269_43979399_43988546_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999376_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
9402	chr16	+	2985	26	NIC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	36	11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_18	356.504442609065	142	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTTTTGATTGCTAT	NA	False	NA	NA	False	NA	NA	NA	48251635	48451274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48251766_48257637_48257692_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
9403	chr16	-	4589	2	NNC	ENSMUSG00000046962.17	novel	5463	2	NA	NA	0	-863	intron_retention	FALSE	canonical	0	0	junction_1	0	74	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTGCTTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	97763815	97749895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_97754294_97763624
9404	chr4	+	4773	14	NIC	ENSMUSG00000028522.17	novel	4703	14	NA	NA	-89	-4	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	41.8667935524905	244	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAACATACTTGTGTGGTG	2795	False	NA	NA	False	NA	NA	NA	102971869	103022942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_102972021_102972756_102972858_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
9405	chr12	-	5015	7	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-5	4	intron_retention	FALSE	canonical	3	37	junction_3	64.5172242290555	16	76	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAAATGTTTTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	55126900	55092456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_55092729_55095671_55095763_55100085_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
9407	chr14	-	4449	21	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11459	60005	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	156	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAACATGCTCACTCCTCC	NA	False	NA	NA	False	NA	NA	NA	19861664	19801413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19801606_19802355_19802614_19813731_19813967_19818277_19819003_19828062_19828212_19828803_19829049_19829601_19829804_19831200_19831368_19839734_19839882_19840344_19840475_19841575_19841717_19847225_19847349_19848463_19848712_19852403_19852629_19853126_19853287_19855365_19855491_19855905_19856081_19857992_19858159_19860059_19860170_19861019_19861133_19861251
9408	chr6	-	2949	19	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	89	577	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	163.321853338057	2	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGTGCTCATGGGGGAG	45	True	NA	NA	False	NA	NA	NA	6217029	6040640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6040648_6041250_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
9409	chr11	+	4301	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	25	-222	intron_retention	FALSE	canonical	3	509	junction_1	9.39266853573691	23	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTAAGAATTATTTT	933	False	NA	NA	False	NA	NA	NA	96932445	96939817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_96935524_96937855_96938021_96938238_96938384_96938904
9410	chr14	-	4442	30	NIC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_28	92.2380469910489	12	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCAGAGCTGTGACAT	9787	False	NA	NA	False	NA	NA	NA	55873099	55863201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55863499_55863610_55863681_55863813_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
9412	chr8	-	3482	5	NNC	ENSMUSG00000054408.10	novel	3466	5	NA	NA	-17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	3	952	junction_4	25.3808490795718	570	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCAGGTTTATGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	54983050	54973468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_54976431_54977975_54978092_54979485_54979561_54981374_54981451_54982797
9413	chr11	-	3738	4	FSM	ENSMUSG00000020737.13	ENSMUST00000155399.2	696	4	-13	-3029	3	0	multi-exon	FALSE	canonical	3	1461	junction_1	143.613679323694	41	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	115405210	115388178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115391511_115392830_115392929_115393857_115394001_115405045
9414	chr16	+	2563	11	NNC	ENSMUSG00000022841.16	novel	2937	12	NA	NA	-15	0	intron_retention	FALSE	non_canonical	0	0	junction_4	1105.58373721758	122	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	1379	False	NA	NA	False	NA	NA	NA	20354253	20363659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060_20363120_20363569
9415	chr11	-	1533	8	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	134	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGTCCTGGCTGAGCCAT	NA	False	NA	NA	False	NA	NA	NA	80286957	80279939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80279970_80280078_80280155_80280597_80280648_80282156_80282225_80282657_80282817_80285109_80285355_80285924_80286087_80286214
9416	chr12	+	3195	4	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516890	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517317_86561263_86561325_86565591_86567705_86567801
9417	chr18	+	2796	21	FSM	ENSMUSG00000024231.16	ENSMUST00000080089.11	2799	21	19	-16	12	16	multi-exon	FALSE	canonical	3	11	junction_3	205.086591468092	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGCATAATGCCTTTT	0	True	NA	NA	False	NA	NA	NA	3383243	3435401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414173_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
9418	chr4	+	2099	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-5	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	124.272084638539	4	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576868	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597189_147597272_147597765_147598016_147598123_147599126_147599386_147599988
9419	chr18	-	1868	9	Antisense	novelGene_ENSMUSG00000024442.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGTGCTGGAGAGAGTCA	NA	False	NA	NA	False	NA	NA	NA	38395679	38386967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_38387121_38387330_38387429_38387526_38387624_38390314_38390452_38391078_38391238_38391320_38391415_38392948_38393107_38394113_38394337_38394930
9420	chr6	-	4250	7	NIC	ENSMUSG00000029569.10	novel	4587	5	NA	NA	-1	-616	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	106.573527044321	9	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACAAAATGCCTTTGCTT	-14	True	NA	NA	False	NA	NA	NA	13608044	13581301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13605785_13605959_13606922_13607084_13607828
9421	chr7	-	4437	17	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-13	-565	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	28.3196045170126	17	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGAACTGTATATACATT	3708	False	NA	NA	False	NA	NA	NA	98305784	98238707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98240092_98243958_98244520_98246239_98246392_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
9422	chrX	-	3057	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-85	6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	386.794742517923	1	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTCCTCAGTTTGATTTC	NA	False	NA	NA	False	NA	NA	NA	23231406	23085503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086642_23086926_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
9423	chr7	+	4424	28	NNC	ENSMUSG00000042055.14	novel	4550	29	NA	NA	-11	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	53.4110031152036	10	48	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGACTTTGTTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	129193620	129237455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226084_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234405_129234580_129235373_129235456_129236543
9424	chr17	+	3239	13	NNC	ENSMUSG00000023921.10	novel	3674	13	NA	NA	72	-331	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	95.8144546622388	17	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCTTGTAGTGTGATGT	NA	False	NA	NA	False	NA	NA	NA	41245647	41272548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_41245671_41247934_41248354_41249405_41249774_41252238_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
9425	chr15	-	4378	38	Fusion	ENSMUSG00000053929.18_ENSMUSG00000034022.9	novel	4518	37	NA	NA	256	0	multi-exon	FALSE	canonical	0	0	junction_23	161.474691415899	1	111	18	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTGGTCATTGTGT	NA	False	NA	NA	False	NA	NA	NA	76540660	76480005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485376_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486016_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534_76491689_76540652
9426	chr12	+	2963	12	NIC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-22	-393	intron_retention	FALSE	canonical	3	2590	junction_5	184.09200897539	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGTATGAAATTAGTAG	NA	False	NA	NA	False	NA	NA	NA	17316573	17334378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
9427	chr3	+	4927	7	NIC	ENSMUSG00000078578.10	novel	1512	8	NA	NA	-2	-7	intron_retention	FALSE	canonical	2	536	junction_1	788.822258532019	10	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACCAATGAGTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	135143992	135171812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135164637_135165735_135165842_135168710_135168805_135170955
9429	chr10	+	4016	4	FSM	ENSMUSG00000112160.2	ENSMUST00000220287.2	2726	4	-38	-1252	-38	1252	multi-exon	FALSE	canonical	3	41	junction_1	4.78423336480244	141	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATAATTTACGTGTA	NA	False	NA	NA	False	NA	NA	NA	81919148	81948302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572
9431	chr8	+	4097	14	NIC	ENSMUSG00000001909.17	novel	3647	15	NA	NA	1	-5	intron_retention	FALSE	canonical	3	116	junction_1	124.911282126023	3	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGCTGGTTGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	85415886	85426409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85415979_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
9432	chr6	-	4281	25	FSM	ENSMUSG00000030279.16	ENSMUST00000171349.8	4292	25	4	7	4	1	multi-exon	FALSE	canonical	3	38	junction_3	28.9653768412489	187	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCTAACTCTTTGCCTC	NA	False	NA	NA	False	NA	NA	NA	143045829	142956652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
9433	chr17	+	4110	26	NIC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	38.7988453436439	184	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCATGATCAAGTATGAGA	NA	False	NA	NA	False	NA	NA	NA	66430530	66459169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
9435	chr5	-	3337	11	NNC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	8	-2	intron_retention	FALSE	canonical	0	0	junction_9	295.985962504981	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTCGTGTGCTGTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	114046758	113980498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003792_114020078_114020219_114046671
9436	chr11	+	5082	3	Antisense	novelGene_ENSMUSG00002075685.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	218	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3589797	3597505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_3593180_3594771_3595528_3596561
9437	chrX	-	3591	26	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	312	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	147.138171797804	1	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTCCACAAATTGATACT	NA	False	NA	NA	False	NA	NA	NA	59224137	59101331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105271_59108458_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
9438	chr4	-	3371	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	310	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	4	True	NA	NA	False	NA	NA	NA	56846072	56810934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
9439	chr14	+	2158	9	NIC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-26	1269	intron_retention	FALSE	canonical	3	6333	junction_1	617.398359549975	91	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGGCAGGGTGCACG	NA	False	NA	NA	False	NA	NA	NA	63359936	63380581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375944_63376447_63376565_63379182_63379312_63379680
9440	chr10	-	4035	20	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	191	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	119.977121549447	1	85	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTTTGCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	61219118	61155438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178690_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182628_61182812_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
9441	chr18	-	2213	13	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	100	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1755.88593300426	10	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAAGCCTCTTGATCTCC	299	False	NA	NA	False	NA	NA	NA	35087310	35070700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071452_35073952_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
9442	chr19	-	2889	11	NNC	ENSMUSG00000013662.7	novel	3771	10	NA	NA	0	264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	170.008352735976	1241	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGCACTGAATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	32689731	32649957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680041_32682479_32682516_32684234_32684410_32689665
9445	chr6	-	2475	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	86	-5	86	5	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	10	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8571	False	NA	NA	False	NA	NA	NA	145021824	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
9446	chr8	+	2862	5	NNC	ENSMUSG00000059897.6	novel	3001	4	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	40.4722126896961	314	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	7220	False	NA	NA	False	NA	NA	NA	69661709	69683188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494_69681653_69681771
9447	chr13	-	2222	9	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	127	junction_5	1198.12079420232	14	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCATTTGCCCTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	100922985	100915241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100920062_100920156_100921964_100922127_100922240_100922412_100922889
9448	chr14	-	3112	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	116	10	95	-10	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	1	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAACCTGCCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	67246210	67222697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
9449	chr3	+	2544	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-3	-350	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	347.798383486116	1	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4853	False	NA	NA	False	NA	NA	NA	34074250	34124121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112333_34116054_34116181_34118267_34118469_34123065
9450	chr18	+	2769	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	2	695	0	2	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	40	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	NA	False	NA	NA	NA	24737019	24771869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
9451	chr6	-	4041	15	FSM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	-8	-3	-8	3	multi-exon	FALSE	canonical	3	160	junction_14	38.6108925098626	266	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGCCCTTAAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	39354617	39311703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
9452	chr2	-	3650	21	NNC	ENSMUSG00000006800.15	novel	4580	21	NA	NA	16	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	274.046236974712	6	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTATCTTGGGACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	165997567	165915835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921032_165921398_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997422
9453	chrX	+	2161	9	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	181	6	118	-6	intron_retention	FALSE	canonical	3	4366	junction_7	274.128049458643	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGAAGTTTTTCCTGTCAT	NA	False	NA	NA	False	NA	NA	NA	105230886	105247299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044
9454	chr9	-	6070	25	ISM	ENSMUSG00000032340.9	ENSMUST00000214547.2	5414	28	54202	-1716	6	-152	3prime_fragment	FALSE	canonical	3	72	junction_21	18.1720175605853	136	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACTGGTCTGGTCAAAA	NA	False	NA	NA	False	NA	NA	NA	58889506	58782121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838459_58863241_58863363_58865180_58865336_58885907_58886045_58889358
9455	chr15	+	2735	17	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	492.060650320415	2	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756688	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794229_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
9456	chr11	-	2199	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	7	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1169.3288287399	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9667	False	NA	NA	False	NA	NA	NA	106679307	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677119_106677324_106677371_106677734_106677901_106679098
9457	chr18	+	4761	8	FSM	ENSMUSG00000041915.10	ENSMUST00000115808.4	3385	8	-46	-1330	8	1330	multi-exon	FALSE	canonical	3	74	junction_2	12.315578321287	177	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACTGTCTTCTGCCTCT	6875	False	NA	NA	False	NA	NA	NA	31892886	31917126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
9458	chr7	+	1307	1	Antisense	novelGene_ENSMUSG00002076275.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	42	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTTATGTATGTATGT	NA	False	NA	NA	False	NA	NA	NA	140684797	140686104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_140684800_140686100
9459	chr7	+	4987	1	Antisense	novelGene_ENSMUSG00000054662.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAAGATCTGGGAACTC	NA	False	NA	NA	False	NA	NA	NA	140686127	140691114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_140686100_140691100
9460	chr2	+	3628	14	NNC	ENSMUSG00000027242.15	novel	2789	13	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.000197237362	512	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATGTCTTTGAGTAA	NA	False	NA	NA	False	NA	NA	NA	121337197	121375337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374143_121374761
9461	chr11	-	4600	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	40	0	9	0	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	272	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTCATTTATTAAT	NA	False	NA	NA	False	NA	NA	NA	8961151	8943136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
9466	chr6	-	2530	9	NIC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-30	52	intron_retention	FALSE	canonical	3	1547	junction_6	253.72610724953	2089	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTGTTTTTTATTTCTT	8926	False	NA	NA	False	NA	NA	NA	47790328	47773022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
9468	chr12	+	3436	5	NNC	ENSMUSG00000020561.9	novel	4325	4	NA	NA	0	-945	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	252.648471200599	945	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTGAATTTATAATTTA	NA	False	NA	NA	False	NA	NA	NA	33479633	33490446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_33479908_33481242_33481299_33483503_33483646_33486934_33487144_33487691
9469	chr3	+	2688	8	ISM	ENSMUSG00000027810.15	ENSMUST00000154219.8	1945	13	17833	4	-344	-4	3prime_fragment	FALSE	canonical	3	708	junction_7	59.7351296498611	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTGCCTTCAAGTT	NA	False	NA	NA	False	NA	NA	NA	58451309	58464918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
9470	chr14	-	5270	19	Antisense	novelGene_ENSMUSG00000002325.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	88	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCACCGCCCCGCTCAGC	NA	False	NA	NA	False	NA	NA	NA	55841128	55829256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55829532_55829625_55829770_55829914_55830068_55830283_55830531_55831749_55831928_55832377_55832757_55832924_55833215_55833460_55833708_55833796_55833988_55834109_55836265_55836356_55836457_55836546_55836640_55838502_55838619_55838733_55838855_55839095_55839211_55839335_55839394_55840057_55840157_55840712_55840879_55840985
9471	chr2	+	3375	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	8	-1093	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	297.618614179579	3	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGTATGTACAAAGAACT	1725	False	NA	NA	False	NA	NA	NA	5849852	5875613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899_5873986_5874260
9472	chr10	-	2287	12	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	594.755300748631	5	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTTGTGTGTTCTCTTTG	8727	False	NA	NA	False	NA	NA	NA	128401821	128393634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396034_128396560_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
9474	chr2	+	2818	20	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	0	-1542	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	185.043155855832	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTGTATAATTACATTGA	7222	False	NA	NA	False	NA	NA	NA	23046529	23087730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899_23087444_23087641
9475	chr12	+	5714	19	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	26	-307	intron_retention	FALSE	canonical	3	13	junction_15	156.999842730125	1	132	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATTCTTTTGTCCTCTA	4081	False	NA	NA	False	NA	NA	NA	83679125	83728487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721664_83721817_83722093_83722855_83722955_83724628_83724677_83728276
9477	chr13	+	2560	1	NIC	ENSMUSG00000021514.19	novel	2909	8	NA	NA	-7386	-216	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACTTTGTGCCTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	65442833	65445393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_65442800_65445400
9479	chr19	-	2618	12	Antisense	novelGene_ENSMUSG00000015176.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.287479787288034	211	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCGCACGCGGCACGACT	NA	False	NA	NA	False	NA	NA	NA	46072971	46064443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46064587_46067139_46067198_46067314_46067458_46067565_46067696_46068344_46068529_46069746_46069858_46069975_46070114_46070684_46070813_46070951_46071065_46071177_46071801_46071956_46072280_46072447
9480	chr10	+	2806	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	3	88	junction_17	229.173164005618	66	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171905	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243731_21244187
9481	chr5	-	2409	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	162	155	-3	1	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	1904	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGCTTGTCTTTCTGGC	2199	False	NA	NA	False	NA	NA	NA	134668182	134648729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
9482	chr5	-	3777	10	NIC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	244	0	intron_retention	FALSE	canonical	3	1363	junction_5	83.2787969695249	1	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	NA	False	NA	NA	NA	24782221	24770342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24771002_24771476_24772311_24772498_24772562_24773202_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516
9484	chr1	-	4657	21	FSM	ENSMUSG00000010453.13	ENSMUST00000010597.10	4663	21	6	0	-4	0	multi-exon	FALSE	canonical	3	87	junction_19	30.7481300244421	204	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTCAGCTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	36408256	36374810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406849_36407116_36408185
9485	chr8	+	3086	13	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	705.320548679031	1	64	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAAGCTGTGTTTCTTG	8837	False	NA	NA	False	NA	NA	NA	120637562	120684292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674599_120675417_120675536_120677116_120677194_120678659_120678699_120679937_120680085_120681527_120681673_120682936_120683003_120683321
9486	chr7	-	3471	4	FSM	ENSMUSG00000044702.14	ENSMUST00000130149.3	3216	4	-19	-236	8	236	multi-exon	FALSE	canonical	3	129	junction_1	6.34209919681348	7	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTACTGCATTCCCAGGC	NA	False	NA	NA	False	NA	NA	NA	121732161	121724568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121727667_121728145_121728240_121728896_121728957_121731942
9487	chr7	-	2245	9	FSM	ENSMUSG00000044702.14	ENSMUST00000131657.8	1350	9	-900	5	-900	-5	multi-exon	FALSE	canonical	3	16	junction_8	49.3653471576976	1	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACATTCTGCTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	121724568	121706494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723616
9488	chr19	-	2636	25	NIC	ENSMUSG00000025159.9	novel	2810	26	NA	NA	1	-19	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	54.9489662222037	1	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGGTAAGTTTCTAACACA	NA	False	NA	NA	False	NA	NA	NA	41969574	41936132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41936335_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
9492	chr2	-	2470	10	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-9	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	482.048355752772	3	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGCTAAAAGCTGGTCTA	NA	False	NA	NA	False	NA	NA	NA	154916376	154901240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904243_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
9493	chr1	+	3057	16	NNC	ENSMUSG00000023150.15	novel	3511	15	NA	NA	60	-166	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	350.026183147617	4	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGCACCCCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	151220388	151240000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862_151239029_151239148
9495	chrX	+	2067	8	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1320.66615843703	25	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487085_100491201
9496	chr5	-	2583	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	36	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCGGCGGTGCCCAG	NA	False	NA	NA	False	NA	NA	NA	135963451	135937266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938344_135939274_135940506_135963176
9497	chr9	+	4879	4	NNC	ENSMUSG00000084911.2	novel	3207	2	NA	NA	-9756	-1881	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	47	47	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACTAAATGACTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	96957622	96968782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_96957997_96958751_96961295_96962246_96962535_96967108
9498	chr7	-	1625	2	ISM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	79	26	79	-26	intron_retention	FALSE	canonical	3	3852	junction_1	0	3	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAATAAAATGACTTAAGG	2569	False	NA	NA	False	NA	NA	NA	126859802	126856156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126856509_126858529
9499	chr17	+	1990	14	ISM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	-35	3258	0	-2111	5prime_fragment	FALSE	canonical	3	638	junction_1	477.324991938401	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGCAGGGACCCTCATCT	1412	False	NA	NA	False	NA	NA	NA	56611312	56627228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161
9502	chr3	-	3668	11	NIC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-9	-36	intron_retention	FALSE	canonical	3	948	junction_5	63.8473961880984	12	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTTTTCTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	157630697	157599920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
9503	chr8	-	3176	19	ISM	ENSMUSG00000031835.17	ENSMUST00000212685.2	6624	22	0	9792	0	3468	5prime_fragment	FALSE	canonical	3	394	junction_18	55.6926087256349	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACTGTGATTGCTGGAAT	8141	False	NA	NA	False	NA	NA	NA	120285474	120244686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
9504	chr12	+	5152	28	FSM	ENSMUSG00000034601.18	ENSMUST00000045907.16	4507	28	-653	8	339	-8	multi-exon	FALSE	canonical	3	73	junction_27	19.0025628189986	78	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACTAAGTCTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	71183960	71290069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71289717
9505	chrX	-	3240	10	NIC	ENSMUSG00000025151.17	novel	2884	12	NA	NA	66	-1	intron_retention	FALSE	canonical	3	1240	junction_7	166.208035639409	2	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTAAGTGTGCTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	93585530	93579082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_93579284_93579465_93579852_93580479_93580963_93581147_93581191_93581281_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
9506	chr2	-	3562	17	NIC	ENSMUSG00000027620.17	novel	2744	18	NA	NA	0	-4	intron_retention	FALSE	canonical	3	198	junction_12	778.538271277495	8	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGCAGTGTGCTCATTA	NA	False	NA	NA	False	NA	NA	NA	156022069	155989863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009509_156009604_156009671_156014747_156014943_156019255_156020873_156021096_156021161_156021806
9507	chr2	-	3923	7	FSM	ENSMUSG00000039826.14	ENSMUST00000156846.8	3930	7	3	4	3	-4	multi-exon	FALSE	canonical	3	76	junction_4	39.677869566464	50	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGACTGGTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	29677669	29664699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
9508	chr2	+	4218	20	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	23	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	141.299744262089	1	91	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAATCATTTGAAA	3616	False	NA	NA	False	NA	NA	NA	126549302	126601207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126549408_126559914_126560085_126561944_126562090_126562540_126562675_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598025_126600039_126600173_126600340
9510	chr1	+	2560	21	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	154.061643506747	1779	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	314	False	NA	NA	False	NA	NA	NA	72346577	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382165_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
9512	chr2	+	2585	9	ISM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	36	16048	-13	1795	5prime_fragment	FALSE	canonical	3	282	junction_1	44.1609273000466	26	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATTGTGAATTAATTTT	NA	False	NA	NA	False	NA	NA	NA	69553184	69568308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332
9513	chr10	+	2604	11	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	1469	2	intron_retention	FALSE	non_canonical	0	0	junction_8	622.766922692591	1	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1152	False	NA	NA	False	NA	NA	NA	79692340	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696808_79698249_79698376_79698486_79698642_79698978
9515	chr15	+	4797	7	NIC	ENSMUSG00000022412.15	novel	4097	8	NA	NA	4	-148	intron_retention	FALSE	canonical	3	18	junction_1	87.9071479839192	5	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTATTTATTTTTTGGT	2847	False	NA	NA	False	NA	NA	NA	80118312	80136839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80118760_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
9516	chr2	+	2483	17	NIC	ENSMUSG00000027642.16	novel	2314	17	NA	NA	-61	1	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	582.937305671673	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157121427	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_157121694_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
9521	chr16	-	3879	10	NNC	ENSMUSG00000003166.21	novel	4045	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	167.223071241846	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	17709562	17658218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709420
9522	chr2	+	3497	13	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	6	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	5.73488351136175	798	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGCGTGTCGGTGCTGTG	2748	False	NA	NA	False	NA	NA	NA	30023808	30042019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711_30041006_30041046
9523	chr13	+	3829	29	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	-9	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	575.848907514562	1	127	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49840859	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49840988_49841632_49841787_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846535_49858308_49858401_49859262_49859362_49860154_49860282_49861885_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
9524	chr18	+	3083	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	18	689	-1	-3	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	851	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTGGTTCATTGTGTGGT	5523	False	NA	NA	False	NA	NA	NA	12261815	12289755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
9525	chr12	-	4614	26	Antisense	novelGene_ENSMUSG00000002900.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAGGTAACCAACCAGC	NA	False	NA	NA	False	NA	NA	NA	31379622	31335623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_31335744_31337412_31337604_31337877_31338058_31338201_31338312_31339337_31339419_31347622_31347759_31348811_31348969_31349920_31350049_31350203_31350327_31350998_31351209_31352559_31352705_31352902_31353133_31354586_31354752_31355764_31355991_31356973_31357187_31357946_31358044_31368260_31368632_31369915_31370102_31370895_31371138_31373459_31373664_31374173_31374317_31376166_31376375_31376564_31376708_31377642_31377819_31379106_31379267_31379353
9526	chr17	-	2498	18	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	9	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	228.460713423238	13	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTGTGGGGTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	36280644	36267707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271834_36274512_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
9527	chr3	+	3099	13	FSM	ENSMUSG00000063052.10	ENSMUST00000156597.8	2450	13	0	-649	0	649	multi-exon	FALSE	canonical	3	70	junction_1	215.046296694973	32	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCATGGTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	157742336	157773375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_157742514_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
9528	chr11	-	2686	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	0	-88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	261.147467918033	32	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758932	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11751733_11751892_11753064_11756095_11756216_11758894
9529	chr5	-	3552	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	-32	0	-15	0	multi-exon	FALSE	canonical	3	925	junction_1	0	1	122	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963485	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
9530	chr5	+	2237	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	170	1	intron_retention	FALSE	non_canonical	0	0	junction_5	1122.04163804201	2	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTGTGTGGTCTATAC	531	False	NA	NA	False	NA	NA	NA	77099398	77115357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110278_77110358_77112288_77112470_77114093_77114253_77114494
9532	chr12	-	4558	8	NNC	ENSMUSG00000020634.13	novel	2696	7	NA	NA	-42	2212	at_least_one_novel_splicesite	TRUE	canonical	3	227	junction_1	380.113033672021	767	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGATCCTCAGTAAGACG	NA	False	NA	NA	False	NA	NA	NA	4957481	4926819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4927640_4927765_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
9533	chr3	-	2470	12	Antisense	novelGene_ENSMUSG00000001416.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCTCCTCAGGAATGACA	NA	False	NA	NA	False	NA	NA	NA	88229056	88204461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88204574_88206648_88206709_88208104_88208156_88208233_88208297_88210072_88210171_88212318_88212435_88216464_88216650_88219033_88219128_88220546_88220677_88220857_88220941_88225645_88225833_88227765
9534	chr19	+	4039	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-36	147	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	269	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTTCCCTACATTTA	3889	False	NA	NA	False	NA	NA	NA	53933267	54021711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
9535	chr17	+	3647	5	ISM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	15852	4	-235	1	3prime_fragment	FALSE	canonical	3	160	junction_2	14.3069039278245	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGGTCTGTAGTCTTT	2717	False	NA	NA	False	NA	NA	NA	24038046	24043711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
9537	chr5	-	2578	15	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	47	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	540.128919796006	294	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCCTGGGTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	24782418	24770343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24775989_24776047_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
9538	chr18	+	5484	4	FSM	ENSMUSG00000024276.8	ENSMUST00000060762.6	5472	4	-29	17	-16	-17	multi-exon	FALSE	canonical	3	23	junction_1	32.0659043568433	131	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTCAATATGCAAACATTT	NA	False	NA	NA	False	NA	NA	NA	24087732	24097713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_24087919_24089395_24089911_24090111_24090254_24093072
9539	chr12	+	2478	8	NIC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	68	junction_5	656.129311545665	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80992282	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995943_80996267_80996379_80996493
9541	chr11	-	1937	9	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	9657	junction_8	1546.8323226436	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563141	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
9542	chr1	+	3479	14	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	114.801397843169	2	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	NA	False	NA	NA	NA	132405134	132433397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_132405266_132411789_132411816_132412483_132412540_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
9544	chr9	-	3274	25	NNC	ENSMUSG00000032407.15	novel	7630	28	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	222.975237632393	2	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATAATGTTGTTTTT	8290	False	NA	NA	False	NA	NA	NA	95393950	95343036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372250_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
9546	chr6	-	2135	9	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	52	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1340.26974313942	8	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGGTCAGGTTGGGAGA	8537	False	NA	NA	False	NA	NA	NA	145021858	144944902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945893_144955771_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
9547	chr10	-	3974	17	Intergenic	novelGene_3416	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	42	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGGGGCTAATTATAT	NA	False	NA	NA	False	NA	NA	NA	25399417	25259729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_25259799_25317469_25317953_25319636_25319851_25336687_25336793_25343991_25344036_25345093_25345168_25347314_25347538_25348970_25349060_25354904_25355058_25355563_25355662_25360103_25360279_25364847_25364990_25377719_25378284_25380029_25380156_25383672_25383754_25388868_25388978_25398192
9548	chr15	+	2593	17	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	491.387894132527	1	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCCTGAGTGATTGATG	NA	False	NA	NA	False	NA	NA	NA	81756684	81799336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793766_81794608_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
9550	chr2	+	2296	10	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-34	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	399.431818684713	21	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAACTTGTGTGTTTAT	8629	False	NA	NA	False	NA	NA	NA	72306562	72317229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063_72316527_72316586
9551	chr5	+	3238	10	FSM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	-87	-3	19	0	multi-exon	FALSE	canonical	3	110	junction_9	101.142119787266	63	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121388	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
9552	chr2	+	3709	14	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.7213155719746	1	70	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATGTCTTTGAGTAAT	NA	False	NA	NA	False	NA	NA	NA	121340311	121375338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374256_121374752
9553	chr8	-	1325	8	NNC	ENSMUSG00000033596.6	novel	4082	9	NA	NA	-14	-3984	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	183.41822400721	1	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAGAGTCTGCACAGTGC	5482	False	NA	NA	False	NA	NA	NA	112026868	112009983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112010022_112011848_112011998_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
9556	chr18	+	3997	21	NNC	ENSMUSG00000024498.17	novel	4101	21	NA	NA	-4573	51	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	184.892969038847	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTTTTTTATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	42652430	42708670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_42652659_42655978_42656132_42656957_42657126_42657197_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
9557	chr7	-	2522	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	51	6	51	-6	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTCTGTTGCCCTAGT	NA	False	NA	NA	False	NA	NA	NA	33867949	33840118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
9559	chr11	+	4555	26	NNC	ENSMUSG00000020464.16	novel	3368	27	NA	NA	-2	-73	intron_retention	FALSE	canonical	1	18	junction_14	125.175166866276	6	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCAGGAGCAACCTAT	NA	False	NA	NA	False	NA	NA	NA	29080745	29111607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29096833_29097331_29097365_29097443_29097534_29098277_29098332_29103231_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
9560	chr7	-	2657	16	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	3256	-1246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	11	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGAGCCGTTGGACCCCGCG	NA	False	NA	NA	False	NA	NA	NA	79965695	79944222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79944338_79950046_79950180_79950782_79950910_79954109_79954339_79954424_79954598_79955663_79955815_79956121_79956268_79957303_79957442_79959138_79959232_79960485_79960634_79960815_79960935_79961970_79962074_79962777_79962956_79963273_79963315_79964859_79965373_79965445
9562	chr9	+	5373	25	NIC	ENSMUSG00000042185.15	novel	5161	26	NA	NA	-2	-12	intron_retention	FALSE	canonical	3	28	junction_5	11.980235459567	136	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATCTTTAATTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	31297497	31332617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308331_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
9563	chr18	-	4092	21	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	93.7131127430948	1	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTCCAGAGCATTTCTA	NA	False	NA	NA	False	NA	NA	NA	62681761	62637223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666971_62667136_62669186_62669321_62673951_62674118_62681675
9564	chr9	+	3729	14	ISM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	43	195	1	-195	intron_retention	FALSE	canonical	3	496	junction_13	53.1480014598065	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACCAAATTGTGTAAA	30	False	NA	NA	False	NA	NA	NA	50768279	50792536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509
9565	chr10	-	2299	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	7	-17	7	1	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	1691	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCTTCTGTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	127358306	127352990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
9566	chr2	-	4557	25	ISM	ENSMUSG00000036893.18	ENSMUST00000102938.10	4680	27	35291	-384	118	22	3prime_fragment	FALSE	canonical	3	154	junction_23	30.7489554926487	2	83	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTTCATTATGACAC	NA	False	NA	NA	False	NA	NA	NA	24774312	24680784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742676_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157
9567	chr1	+	2987	18	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	21	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	514.332913608259	3	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTACTCTCGTGTTGTGTGC	3168	False	NA	NA	False	NA	NA	NA	180396514	180428815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396597_180411316_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
9568	chr16	-	2277	13	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-24	110	intron_retention	FALSE	canonical	3	4287	junction_7	278.106344567845	11	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87292785	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
9569	chr11	+	3379	20	FSM	ENSMUSG00000025579.15	ENSMUST00000026666.13	3363	20	-21	5	-21	-5	multi-exon	TRUE	canonical	3	38	junction_1	100.783495768854	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGTTCTCACGTCACC	NA	False	NA	NA	False	NA	NA	NA	119158830	119176275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
9570	chrX	+	3991	6	NNC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	-2	-5	intron_retention	FALSE	canonical	0	0	junction_1	63.2348005452694	176	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCATAAATGACCCTTCT	NA	False	NA	NA	False	NA	NA	NA	134739780	134745470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134740012_134740531_134740622_134741141_134741219_134741367_134741678_134741913_134742053_134742326
9571	chr9	-	4620	15	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	0	-174	intron_retention	FALSE	canonical	0	0	junction_10	60.350380009963	5	88	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAAAAGACTTTATGGAG	6411	False	NA	NA	False	NA	NA	NA	44272934	44259398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267511_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135
9572	chr16	-	2765	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	66	-73	30	73	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	8	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAGTTGTACTTGGTGA	6296	False	NA	NA	False	NA	NA	NA	38370554	38345425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
9573	chr9	-	3395	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	6	-3	6	3	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	602	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854050	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
9576	chrX	-	3181	11	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	433.294368761008	3	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231323	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23101878_23102001_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732_23227824_23231194
9577	chr11	-	1362	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	54	384	54	-384	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTTGGACGCGCTGGC	1901	False	NA	NA	False	NA	NA	NA	59119042	59102623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
9578	chr9	-	4844	6	FSM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	-57	0	-57	0	multi-exon	FALSE	canonical	3	174	junction_5	23.9198662203617	439	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATTGTGTGGACCTGT	NA	False	NA	NA	False	NA	NA	NA	42175609	42162890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
9579	chr12	+	4228	1	Antisense	novelGene_ENSMUSG00000047832.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACACAGGAAGAGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	112782744	112786972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_112782700_112787000
9581	chr7	-	3748	28	NNC	ENSMUSG00000003435.10	novel	3755	29	NA	NA	-1	-8	intron_retention	FALSE	non_canonical	0	0	junction_25	158.096782360023	7	123	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTTGAAAAGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	28038132	28014330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776
9582	chr4	+	2804	19	Antisense	novelGene_ENSMUSG00000040964.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.229061423645426	19	14	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCTCACAGATACCTGCA	NA	False	NA	NA	False	NA	NA	NA	140290076	140361338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_140290128_140291498_140291629_140292444_140292562_140295653_140295834_140297568_140297714_140302594_140302766_140304361_140304460_140305553_140305671_140306579_140306756_140307695_140307776_140308133_140308238_140311129_140311248_140319132_140319298_140320402_140320490_140321457_140321548_140337840_140337878_140338539_140338722_140344220_140344306_140360667
9584	chr7	-	2908	21	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-5	1	intron_retention	FALSE	canonical	3	20	junction_10	492.683052276004	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153798	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143124700_143124816_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
9586	chrX	-	3384	27	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-83	-3513	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_21	141.783947856668	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTACATCTCTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	59224532	59104831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941_59224048_59224496
9587	chr1	+	3278	14	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	352.83928654584	1	107	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406773	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93407185_93407304_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
9588	chr13	+	2230	13	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10604	-4542	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	56	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGAGGGGGAGGGGAGT	NA	False	NA	NA	False	NA	NA	NA	58539457	58550328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_58540291_58541009_58541177_58541504_58541631_58542290_58542600_58542978_58543108_58543387_58543504_58544003_58544073_58544639_58544714_58545566_58545608_58546965_58547027_58547706_58547803_58548144_58548234_58550208
9590	chr18	-	2493	16	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	13	-225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1611.6349241962	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	212	False	NA	NA	False	NA	NA	NA	35087397	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075044_35079002_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
9591	chr1	-	2907	20	NNC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	0	-3	intron_retention	FALSE	canonical	0	0	junction_13	354.232375958615	2	36	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTGATATTAAAGTGTGA	NA	False	NA	NA	False	NA	NA	NA	63215828	63182757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186577_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204188_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63214795_63214848_63215586
9592	chrX	-	2319	6	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	206	-541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	231.2	21	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATTGTGTCCTCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	149776762	149766677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766936_149767151_149767704_149768119_149769183_149770834_149771058_149774138_149774230_149776630
9595	chr15	-	3546	17	FSM	ENSMUSG00000042632.18	ENSMUST00000174021.8	3318	17	-243	15	-4	-11	multi-exon	FALSE	canonical	3	78	junction_16	39.721638860324	408	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGTTTACACTCAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	79212407	79170442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
9596	chr4	+	6179	7	NNC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	-13	intron_retention	FALSE	canonical	1	9	junction_3	86.0143721840846	2	165	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTTATAAGAGTTGT	8303	False	NA	NA	False	NA	NA	NA	156194486	156211707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194631_156198345_156198459_156201152_156201306_156201466_156201561_156203620_156206874_156207991_156208580_156209873
9597	chr17	+	2512	15	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	458.467901086358	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4867	False	NA	NA	False	NA	NA	NA	87979963	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026894_88031074
9598	chr2	-	6919	6	Antisense	novelGene_ENSMUSG00000102258.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	163	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCCCCGCCCCCGCCCCG	NA	False	NA	NA	False	NA	NA	NA	15087253	15060098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_15060384_15072947_15073011_15074630_15074777_15077932_15078017_15079770_15079924_15081065
9599	chr1	-	2332	8	Intergenic	novelGene_326	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGAAGCCGCTGGCCTAGG	4277	False	NA	NA	False	NA	NA	NA	4968126	4928062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_4928179_4956966_4957053_4959677_4959824_4960960_4961020_4962137_4962291_4963637_4963785_4965151_4965227_4966576
9600	chr10	+	3318	29	NNC	ENSMUSG00000040675.18	novel	3535	28	NA	NA	46	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.291861924653	1	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTCTAGAAAACCGTGTT	NA	False	NA	NA	False	NA	NA	NA	3923189	4106096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_3923251_3923410_3923483_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
9603	chr13	-	2774	2	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	10	483	10	-483	intron_retention	FALSE	canonical	3	496	junction_1	0	28	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTAACGGTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	34314327	34311213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_34312515_34312854
9604	chr14	+	4191	43	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	23	-90	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	251.25909692357	1	109	16	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTACTTTGTCAGACACT	NA	False	NA	NA	False	NA	NA	NA	47886795	47973646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887417_47887521_47887855_47887944_47901276_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971728_47973556
9605	SIRV7	-	2407	6	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1828.91786584308	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147918	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608_147693_147783
9606	chr10	+	2561	6	NIC	ENSMUSG00000006728.13	novel	2038	7	NA	NA	-1	-18	intron_retention	FALSE	canonical	3	4641	junction_2	452.974436364791	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGAGTATGGTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	126899401	126903148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126900323_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
9608	chr5	+	1733	10	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1403.40213608059	4	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	755	False	NA	NA	False	NA	NA	NA	77099622	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107330_77109074_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114786_77114936
9609	chr4	+	2455	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2582	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	124.355086345513	71	61	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147576867	147600525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597630_147599221
9610	chr6	+	2226	11	NIC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	4	-92	intron_retention	FALSE	canonical	3	5555	junction_1	308.502917328183	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5152	False	NA	NA	False	NA	NA	NA	85429037	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444768_85445034
9611	chr7	+	5817	17	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	5	0	intron_retention	FALSE	canonical	3	56	junction_14	50.8772649987202	5	45	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTTTCTATGGACTG	NA	False	NA	NA	False	NA	NA	NA	140808706	140842655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140840621_140840872_140841028_140841200_140841456_140841688_140841818_140842321
9612	chr10	+	3225	13	FSM	ENSMUSG00000037608.17	ENSMUST00000186100.7	3231	13	0	6	0	-2	multi-exon	FALSE	canonical	3	15	junction_10	359.421864094116	480	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTATCATATTTGTAACTAT	2793	False	NA	NA	False	NA	NA	NA	20188217	20216006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20208141_20208304_20209137_20209319_20215454_20215668_20215797
9613	chr18	-	3147	14	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	0	-7	intron_retention	FALSE	canonical	1	60	junction_10	1378.11054940833	1	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTTTTAATTATGGTC	NA	False	NA	NA	False	NA	NA	NA	64649570	64633295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64643603_64644681_64644768_64644855_64644949_64645054_64645121_64648396_64648480_64649486
9614	chr10	+	2566	12	NNC	ENSMUSG00000019970.16	novel	859	8	NA	NA	-704	-2	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	275.892750751728	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAATTGTGTCATGTGT	NA	False	NA	NA	False	NA	NA	NA	21867417	21875795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21867695_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
9615	chr13	-	4216	28	NNC	ENSMUSG00000021357.15	novel	4256	28	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	41.4629919110613	2	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTTATGTTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	31158048	30997908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056314_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084768_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
9616	chr17	-	2151	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	676.839671435121	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906473	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903270_45904257_45904359_45906407
9617	chr15	-	3182	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.638995176448	3	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTTTGAGCTATAATGT	NA	False	NA	NA	False	NA	NA	NA	83033511	83010180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
9619	chr11	-	4384	28	NIC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	-8	-4	intron_retention	FALSE	canonical	3	227	junction_18	34.7434256247518	6	75	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAGTACTTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	60618057	60604972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
9620	chr5	-	2369	13	NIC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	88	-1	combination_of_known_splicesites	FALSE	canonical	2	24	junction_4	419.250720532078	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCCTGGGTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	24782377	24770343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
9621	chr7	-	3913	26	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	32	2	intron_retention	FALSE	non_canonical	0	0	junction_12	289.487270877322	5	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTGTGGTCTTTGGG	NA	False	NA	NA	False	NA	NA	NA	44198230	44182167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188035_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
9622	chr2	-	4017	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	35	14	0	-14	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	720	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAACTGGAAAATATCTG	NA	False	NA	NA	False	NA	NA	NA	48839253	48792849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
9623	chr3	+	2782	15	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_5	220.436209477889	910	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742352	157772727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754253_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
9624	chr13	-	2870	16	NIC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	28	401	combination_of_known_splicesites	FALSE	canonical	1	3	junction_14	195.521001997796	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTCTATGCCTAGTAAC	NA	False	NA	NA	False	NA	NA	NA	9046058	9022114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9042680_9042852_9045984
9625	chr3	+	2902	20	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	0	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5073.64398324302	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAAACCATTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	102927935	102964426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951232_102952074_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
9626	chr18	+	2692	14	FSM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	80	288	43	176	multi-exon	FALSE	canonical	3	372	junction_1	299.077338556217	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTCTGCAGACTTGAG	7979	False	NA	NA	False	NA	NA	NA	77152983	77241208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
9627	chr11	-	3071	19	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-19	-5	intron_retention	FALSE	canonical	3	632	junction_7	77.6830375370818	229	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATAACTTTTCTGATA	NA	False	NA	NA	False	NA	NA	NA	106146649	106139972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144231_106144307_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
9630	chr1	-	3923	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	15	-2533	15	-192	multi-exon	FALSE	canonical	3	1179	junction_1	0	60	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTAGTGGAATTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	182110354	182103528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_182107284_182110186
9632	chr4	-	3192	7	NIC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	14	3	combination_of_known_splicesites	FALSE	canonical	3	33	junction_6	141.739981029427	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTAATGAAGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	126954931	126941382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126954788
9633	chr14	+	2165	13	NIC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	1855	junction_3	151.131197602907	136	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
9635	chr18	-	4682	6	FSM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	71	-1425	-15	1425	multi-exon	FALSE	canonical	3	266	junction_2	22.8962879087419	747	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATTTTTAAAACACCAAGG	NA	False	NA	NA	False	NA	NA	NA	40352411	40335523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
9636	chr3	+	1330	6	Antisense	novelGene_ENSMUSG00000027984.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	358	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGCTGTGCACCACGG	NA	False	NA	NA	False	NA	NA	NA	131027093	131042141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_131027936_131029190_131029307_131034581_131034661_131036166_131036251_131038804_131038938_131042065
9637	chr18	+	2666	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	98	702	74	-5	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	7	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAACTTTGTCTGATTT	NA	False	NA	NA	False	NA	NA	NA	24737115	24771862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
9638	chr15	+	1239	4	Antisense	novelGene_ENSMUSG00000005354.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	157	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCCGTCAAGGGCACTC	NA	False	NA	NA	False	NA	NA	NA	77799247	77813146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_77800062_77808744_77808864_77811888_77812157_77813108
9639	chr5	+	3138	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	40	-1655	0	1655	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	3921	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCATTTTTACCTGGTCA	NA	False	NA	NA	False	NA	NA	NA	73450174	73473067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
9640	chr2	+	5469	20	FSM	ENSMUSG00000042410.17	ENSMUST00000047232.14	7359	20	190	1700	-138	-1700	multi-exon	FALSE	canonical	3	643	junction_12	64.0151038271871	346	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTGTGGAGCTGTTTTT	677	False	NA	NA	False	NA	NA	NA	75662710	75759994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_75662856_75681837_75681928_75683065_75683157_75684513_75684635_75684874_75684950_75687360_75687433_75689242_75689323_75692277_75692359_75697090_75697217_75698648_75698758_75707814_75707943_75718459_75718512_75722135_75722213_75724388_75724502_75730525_75730596_75733261_75733324_75735202_75735293_75739944_75740045_75741964_75742023_75756265
9641	chr5	+	3278	3	NNC	ENSMUSG00000046079.17	novel	492	3	NA	NA	582	-481	intron_retention	FALSE	canonical	3	20	junction_1	268	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATTGCAGTTTTTTGG	5550	False	NA	NA	False	NA	NA	NA	105849313	105962595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_105849441_105880095_105880241_105959589
9642	chr3	-	4658	13	NIC	ENSMUSG00000028273.16	novel	5016	13	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_9	45.7355775688419	20	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCACGCCTGGCCTTTTTT	7034	False	NA	NA	False	NA	NA	NA	142101423	141945350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142017976_142020166_142020210_142058494_142058647_142097473_142097612_142101346
9644	chr10	+	2369	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	279.836404392174	1	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTGCATAAATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	21870581	21875789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870907_21871395_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
9645	chr9	+	4310	25	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-18	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	231.544238483707	1	156	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATAGGTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	44291807	44303650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296130_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299899_44300083_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
9646	chr2	-	3156	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	-734	16	-419	-16	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	887	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTTTTCATCGTATAGT	NA	False	NA	NA	False	NA	NA	NA	168797926	168767296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
9647	chr9	-	2319	12	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.1088824216403	634	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCAGCTAACAAAGGCTT	NA	False	NA	NA	False	NA	NA	NA	13738346	13719092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719504_13719647_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
9648	chr5	-	3200	6	NNC	ENSMUSG00000109771.2	novel	512	6	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.3976376854226	649	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAAAGTGTTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	110242284	110224002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110224744_110224979_110226088_110226171_110227247_110228349_110228411_110228603_110228731_110242196
9649	chr16	-	3265	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	21	-2050	4	-778	multi-exon	FALSE	canonical	3	117	junction_1	698.5	42	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGGATCTGTATATACTT	NA	False	NA	NA	False	NA	NA	NA	15412350	15371318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15374408_15398922_15399072_15412323
9651	chr14	+	2504	4	Antisense	novelGene_ENSMUSG00000087912.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTGGTACTAGATCTGA	1510	False	NA	NA	False	NA	NA	NA	30734389	30737325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30734590_30734677_30735523_30735609_30735751_30736007
9652	chr1	+	2385	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	-73	-1382	8	-5	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGATTGCTTTATATAGTA	NA	False	NA	NA	False	NA	NA	NA	4878060	4916957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
9653	chr12	-	4010	8	NIC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_6	101.263245543283	455	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	87490606	87472938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
9654	chr8	-	2079	6	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	1706.65239577367	566	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760080	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43758460_43758596_43759877
9656	chr8	+	4150	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-97	-794	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	2	180	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTACGTGTGGCACCAT	NA	False	NA	NA	False	NA	NA	NA	20697887	20726472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
9657	chr18	+	4774	9	NIC	ENSMUSG00000041915.10	novel	3385	8	NA	NA	66	1327	combination_of_known_junctions	FALSE	canonical	3	6	junction_7	37.6345502829514	13	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAAACTGTCTTCTGCC	6987	False	NA	NA	False	NA	NA	NA	31892998	31917123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913094_31913223_31913696
9659	chr7	-	2829	19	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	22	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	967.407655018118	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165508	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146505_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156684_126157799_126157911_126158039_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
9660	chr5	+	1982	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-143	2	intron_retention	FALSE	non_canonical	0	0	junction_9	1064.7410860143	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	613	False	NA	NA	False	NA	NA	NA	77099480	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114796_77114970
9661	chr8	+	2819	4	NNC	ENSMUSG00000052446.18	novel	698	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	155.20380865888	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72707290	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72707523_72719637_72719750_72719964_72720005_72721742
9662	chr11	-	4405	10	NNC	ENSMUSG00000001036.18	novel	4243	10	NA	NA	-7	-757	intron_retention	FALSE	canonical	0	0	junction_6	146.885779089623	2	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAGAGACCACAGACTTG	NA	False	NA	NA	False	NA	NA	NA	61470503	61408832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61425433_61426092_61426210_61436975_61437738_61438833_61438869_61470392
9664	chr18	-	2295	1	FSM	ENSMUSG00000073647.5	ENSMUST00000097690.5	619	1	-309	-1367	-309	1367	mono-exon	FALSE	NA	NA	NA	NA	NA	43	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTGAAATATTGAAATTAA	2	True	NA	NA	False	NA	NA	NA	4199247	4196952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_4197000_4199200
9665	chr7	-	2987	3	Antisense	novelGene_ENSMUSG00000108878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTAGCGTAACGGACTGC	NA	False	NA	NA	False	NA	NA	NA	83549519	83541491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83541682_83544735_83544969_83546955
9666	chr10	-	3052	11	ISM	ENSMUSG00000020184.16	ENSMUST00000105263.9	3145	12	598	18	-82	2	3prime_fragment	TRUE	canonical	3	51	junction_9	142.588919625615	9	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATTTGTCTTACACATT	NA	False	NA	NA	False	NA	NA	NA	117546065	117524797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545558_117545690_117545850
9667	chr16	-	3705	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	-6048	46	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_10	298.466011465292	20	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAATATAACCGAATATAAT	182	False	NA	NA	False	NA	NA	NA	38376668	38345452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38375591
9668	chr8	-	3577	9	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21252	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	147.80471702554	6	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	NA	False	NA	NA	NA	81585873	81491068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518161_81585823
9669	chr2	+	4306	6	FSM	ENSMUSG00000000826.17	ENSMUST00000108797.8	3664	6	4	-646	4	629	multi-exon	FALSE	canonical	3	55	junction_1	79.8884221899519	78	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAACAGCTGTGGTTTCT	7075	False	NA	NA	False	NA	NA	NA	181162347	181194671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181191065
9670	chr7	-	2167	17	NIC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	1600	junction_14	153.638361400238	65	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33929712	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
9672	chr16	-	2658	8	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-9918	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	369.553287974903	44	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCTGCAACCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	22230497	22200060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22201274_22201772_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
9675	chr13	+	2905	12	Antisense	novelGene_ENSMUSG00000116016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	437	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGAGGCGGGGCGAGGGG	NA	False	NA	NA	False	NA	NA	NA	111562691	111626481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111563186_111570081_111570185_111572930_111573118_111574489_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589774_111589898_111590031_111603384_111603457_111623995_111624907_111626253
9676	chr13	-	4336	31	NIC	ENSMUSG00000042590.18	novel	4325	30	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	172.68894643903	19	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTGACTTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	107073453	106930949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106994006_106994034_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
9677	chr1	+	1938	14	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	84	-5649	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	134.791840393573	1	27	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGGTGTGCCTGTTAAC	9454	False	NA	NA	False	NA	NA	NA	87604044	87634232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623059_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655
9678	chr7	-	3036	11	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_10	74.2603528135976	5	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	2654	False	NA	NA	False	NA	NA	NA	3214342	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3214161
9679	chr11	-	2148	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48644153_48644324
9680	chr3	+	3876	5	NIC	ENSMUSG00000005687.15	novel	2717	6	NA	NA	0	1	intron_retention	FALSE	canonical	3	101	junction_2	1615.65441462585	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	NA	False	NA	NA	NA	103079064	103086144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103084736_103085670
9681	chr11	-	2682	12	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	195.645488127872	712	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCCGATATTTCTTTCA	974	False	NA	NA	False	NA	NA	NA	79145498	79130208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79130461_79130573_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79133320_79133486_79134237_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
9682	chr11	+	1764	1	ISM	ENSMUSG00000017548.16	ENSMUST00000163272.2	4303	15	39250	3	7161	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCATGGTCTGCATTG	NA	False	NA	NA	False	NA	NA	NA	79923181	79924945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_79923200_79924900
9683	chr8	+	3534	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	27	-2194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1185.14684638656	1	122	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACATCTAGATGAGGTCA	NA	False	NA	NA	False	NA	NA	NA	111760574	111782102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771506_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776527_111776969_111777182_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
9684	chr7	+	1520	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	468	1	7	-1	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGGTGCTTCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	140462348	140478554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
9685	chr11	-	3458	14	NNC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	0	1629	intron_retention	FALSE	canonical	0	0	junction_5	245.913368110366	38	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGACCCTCATTGACGA	NA	False	NA	NA	False	NA	NA	NA	120687215	120678397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
9686	chrX	-	3000	23	NNC	ENSMUSG00000031059.10	novel	908	3	NA	NA	-33270	-2080	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	5	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTAAACAAACTTAGGCCGG	NA	False	NA	NA	False	NA	NA	NA	20517128	20483644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_20483747_20486212_20486353_20501968_20502152_20505669_20505737_20507415_20507494_20508980_20509068_20510908_20510970_20511101_20511281_20511675_20511836_20512006_20512104_20512195_20512279_20513553_20513742_20513846_20513987_20514101_20514226_20514318_20514410_20514492_20514658_20515379_20515531_20515621_20515692_20515768_20515958_20516037_20516113_20516399_20516509_20516585_20516714_20516795
9687	chr5	-	3346	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	7	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	2	110	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACAGATCTGATGTCGG	NA	False	NA	NA	False	NA	NA	NA	135963444	135937276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937898_135938048_135940506_135963176
9689	chr2	+	2536	17	Antisense	novelGene_ENSMUSG00000027184.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCGACGATTTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	103598226	103627235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103598814_103599146_103599248_103599778_103599975_103602041_103602195_103603014_103603163_103603317_103603428_103604076_103604141_103605761_103605870_103605953_103606109_103606276_103606366_103606449_103606508_103608310_103608446_103609508_103609590_103609675_103609917_103613300_103613391_103613490_103613550_103627074
9690	chr6	-	3142	17	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	34789	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	268.144987599992	8	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6139162	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6136227_6136488_6136995_6137086_6138998
9691	chr13	-	5121	5	NNC	ENSMUSG00000021510.12	novel	9455	4	NA	NA	-2	13	intron_retention	TRUE	non_canonical	0	0	junction_1	13.2382022948737	7	131	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTTTACTTATAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	67785912	67765132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67767824_67767908_67769969_67771586_67771683_67772153_67772281_67785765
9692	chr8	-	2478	6	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	2060.93192512514	23	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760068	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749173_43749261_43749574_43753664_43753743_43757512_43757597_43758460_43759201_43759877
9694	chr1	-	2782	11	FSM	ENSMUSG00000026705.17	ENSMUST00000140905.8	4817	11	60	1975	-9	-1952	multi-exon	FALSE	canonical	3	70	junction_3	13.23064624272	72	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAATAGAACAAATTTTAT	NA	False	NA	NA	False	NA	NA	NA	160959021	160917919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
9697	chr3	+	4352	10	NIC	ENSMUSG00000008604.12	novel	3330	11	NA	NA	2	-6	intron_retention	FALSE	canonical	3	1295	junction_7	121.63312576741	66	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTATATTGGTGGTTTGT	6113	False	NA	NA	False	NA	NA	NA	88461072	88477026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
9698	chr7	-	3152	6	NIC	ENSMUSG00000025465.14	novel	1557	8	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	1613	junction_2	102.659826611971	15	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGCCGTAACTATTTGT	NA	False	NA	NA	False	NA	NA	NA	139696321	139685634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139692460_139692848_139693047_139696219
9700	chr9	-	1461	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	38	433	-26	207	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	11	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCAGATGGGGAAGTGA	NA	False	NA	NA	False	NA	NA	NA	110775188	110769103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
9701	chr17	+	2367	7	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-4260	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.718529686559	94	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTGGGTGGGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	17280114	17309917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17280172_17281029_17281160_17305782_17305910_17306151_17306213_17307505_17308915_17309250_17309519_17309602
9702	chr13	+	4019	4	NNC	ENSMUSG00000062382.10	novel	491	4	NA	NA	-2	5617	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_3	24.2532930181083	96	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGGGATTCTCCACAGA	1245	False	NA	NA	False	NA	NA	NA	74547810	74561082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_74547912_74553897_74554023_74554221_74554283_74557350
9703	chr2	-	1343	11	Antisense	novelGene_ENSMUSG00000027374.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGAGAGTTGCCTAGA	NA	False	NA	NA	False	NA	NA	NA	127445906	127432645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_127432701_127433732_127433872_127436363_127436488_127437581_127437816_127438817_127438853_127440103_127440195_127441929_127441977_127442746_127442807_127443297_127443366_127444309_127444447_127445553
9705	chr2	-	4218	28	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-4	-4	intron_retention	TRUE	non_canonical	0	0	junction_5	111.235387289565	1	126	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACCATTTGCCTGCAGT	NA	False	NA	NA	False	NA	NA	NA	103591619	103551608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557228_103558151_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562591_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574624_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
9707	chr16	+	2680	22	ISM	ENSMUSG00000038084.17	ENSMUST00000038867.13	3230	30	0	31043	0	2126	intron_retention	FALSE	canonical	3	139	junction_4	98.2300045141405	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTTACTTCATGGAAGA	NA	False	NA	NA	False	NA	NA	NA	29398197	29439651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198
9709	chr1	-	1578	2	Intergenic	novelGene_367	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	35	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTGGCAACCTTATC	NA	False	NA	NA	False	NA	NA	NA	52556730	52554683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_52556201_52556669
9710	chrX	-	1419	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	38	402	35	-402	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGAATGCTGGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	135642063	135634103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
9711	chr8	+	2602	12	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-16	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	458.372038435848	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8811	False	NA	NA	False	NA	NA	NA	120637536	120684296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680059_120683772
9712	chr8	-	3148	17	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-23	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	358.057956202624	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGCTGTTAACAATTT	NA	False	NA	NA	False	NA	NA	NA	86026121	85987037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014450_86016334_86016432_86021487_86021587_86026083
9714	chr16	-	3874	9	NIC	ENSMUSG00000003166.21	novel	4003	10	NA	NA	0	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_8	126.124938057467	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	17709518	17658218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17709249
9715	chr9	+	6660	41	FSM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	56	11	0	-11	multi-exon	FALSE	canonical	3	15	junction_20	11.0181384543851	31	84	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGAGCAAATTGGATGCA	5184	False	NA	NA	False	NA	NA	NA	75139357	75212722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240_75165507_75169489_75169572_75170266_75170408_75173349_75173476_75174306_75174391_75176802_75176938_75177550_75177649_75178824_75178912_75180126_75180239_75180790_75181003_75182752_75182919_75183183_75183331_75184213_75184379_75185506_75185601_75186617_75186682_75189117_75189299_75191174_75191269_75191428_75191493_75192214_75192296_75193692_75193874_75195330_75195425_75196174_75196239_75196340_75196510_75198130_75198219_75199435_75199535_75201207_75201363_75202443_75202534_75203291_75203443_75204685_75204969_75208087_75208263_75208685_75208767_75211211
9717	chr11	-	3425	17	NNC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	75	542	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	158.332719297055	3	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGCGGTGGTGGTACAT	1205	False	NA	NA	False	NA	NA	NA	107080103	107056946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064241_107066391_107066576_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
9718	chr11	+	4609	16	NNC	ENSMUSG00000020823.17	novel	4654	16	NA	NA	-1	-3	intron_retention	FALSE	non_canonical	0	0	junction_3	92.1621759002394	6	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAGAGTGTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	117006062	117050088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117006178_117007985_117008079_117032243_117032354_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
9719	chr13	-	3190	15	FSM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	-3	505	-3	78	multi-exon	FALSE	canonical	3	277	junction_10	41.7021141733919	568	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATCCTGTGCTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	68730243	68709403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
9721	chr1	-	2332	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	84	5786	48	-9	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	42	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTCTGTTGCCAGACTT	NA	False	NA	NA	False	NA	NA	NA	86287038	86278226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
9722	chr5	-	2610	19	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	105.070243993433	2	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGGCCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	30359983	30324427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346066_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
9723	chr15	+	3724	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	-12	917	-12	-917	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	34	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAAATGTCAGTCTGC	NA	False	NA	NA	False	NA	NA	NA	84076429	84100551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
9724	chr3	+	2761	8	NNC	ENSMUSG00000038393.15	novel	2827	8	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	168.922999002021	1184	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	96465275	96469182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467630_96467794
9726	chr4	+	4332	7	ISM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	49	7	0	-7	intron_retention	FALSE	canonical	3	2261	junction_5	122.376468326227	5	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGAGGTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	118478044	118484966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331
9727	chr1	-	3714	21	NNC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	73	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	54.8728302532319	241	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTTGCTTTTCCGTTTA	NA	False	NA	NA	False	NA	NA	NA	151304114	151243451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151261778_151261899_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
9728	chr8	+	2574	13	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_5	371.107314518171	1194	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTCTGTGTTTCTGTAA	2140	False	NA	NA	False	NA	NA	NA	13388787	13428445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420171_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
9730	chr4	+	3149	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	2545	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	52.3945369289585	1	124	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAACTAACTCCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	147576855	147600488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592095_147596801_147598217_147599053
9731	chr2	-	3928	16	NIC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	17	-47	intron_retention	FALSE	canonical	3	394	junction_7	31.3134688805526	12	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTAAGTGTATTTAATA	NA	False	NA	NA	False	NA	NA	NA	126975857	126945793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
9732	chr11	+	3067	7	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-16	1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	115.906571570957	6	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	NA	False	NA	NA	NA	62349417	62406860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62349521_62364194_62364295_62394504_62394596_62400645_62400678_62402963_62403098_62403729_62405978_62406501
9733	chr5	-	3643	4	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-15	1	intron_retention	FALSE	canonical	3	934	junction_1	101.156644204257	2	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTCCTGCGTCAGGTA	NA	False	NA	NA	False	NA	NA	NA	100186769	100182584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184836_100184943_100185076_100185426_100185589_100185671
9735	chr2	-	5988	11	NNC	ENSMUSG00000061411.13	novel	6399	11	NA	NA	8889	1	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_10	25.0856532703456	213	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAGCTTCGACTATGTC	NA	False	NA	NA	False	NA	NA	NA	153363002	153249380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153312607_153312718_153319790_153319903_153325606_153325763_153362884
9736	chr3	-	3368	26	ISM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	1184	1	1109	-1	3prime_fragment	FALSE	canonical	3	562	junction_13	50.8512497388216	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCTGGTTCCCTGAATA	NA	False	NA	NA	False	NA	NA	NA	100068539	100045496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335
9738	chr6	+	2580	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	273.915672343799	141	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5403	False	NA	NA	False	NA	NA	NA	125108837	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117548_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
9739	chr5	-	4216	27	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	0	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	119.034410270318	1	98	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAATCATCTGTACATAAT	NA	False	NA	NA	False	NA	NA	NA	108777621	108717325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754804_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772955_108777366
9740	chr8	+	3925	5	NIC	ENSMUSG00000089857.10	novel	631	3	NA	NA	-35	18862	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	28.6487347015536	8	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGCCCCTATCACTGGA	NA	False	NA	NA	False	NA	NA	NA	72662713	72689060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72663126_72666965_72667093_72682045_72682173_72682981_72683043_72685862
9741	chr14	+	3735	32	NNC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	-39	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	236.367973589075	4	74	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAACATGACTCACTCTGA	NA	False	NA	NA	False	NA	NA	NA	47886811	47974011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930859_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933037_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
9742	chr14	+	4328	19	NNC	ENSMUSG00000021823.11	novel	5267	21	NA	NA	4	-424	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	67.8739072394585	4	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAAATCTTAAGTTGACC	NA	False	NA	NA	False	NA	NA	NA	20979469	21083320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20979757_21017605_21017677_21032641_21032793_21033435_21033545_21035694_21035818_21037025_21037187_21045079_21045171_21045912_21046061_21051198_21051353_21053162_21053339_21057181_21057373_21058928_21059129_21060105_21060235_21064978_21065129_21069347_21069423_21074222_21074360_21079243_21079448_21079849_21079955_21081654
9743	chr19	-	2798	10	NNC	ENSMUSG00000013662.7	novel	3771	10	NA	NA	-1	264	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	137.875144807016	1219	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGCACTGAATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	32689721	32649957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32678998_32679939_32680039_32684234_32684410_32689665
9744	chr4	+	2593	9	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	258	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	245.146352971036	1850	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGATTATACTTGA	5306	False	NA	NA	False	NA	NA	NA	89055616	89099318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89056834_89056889_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
9745	chr2	+	4591	13	NNC	ENSMUSG00000036617.18	novel	407	3	NA	NA	1945	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	74.7094371548869	3	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	4826	False	NA	NA	False	NA	NA	NA	20729380	20815335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_20729565_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20812712_20812836_20813520
9746	chrX	-	4521	19	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	5	755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	41.9985302505918	3	168	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCAAGCACGGTCTCATA	NA	False	NA	NA	False	NA	NA	NA	49724133	49646259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49647262_49651556_49651609_49651683_49651832_49653689_49653845_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662229_49666747_49666902_49669689_49669827_49670279_49670434_49672801_49673137_49680816_49680963_49684337_49684349_49687010_49687166_49689620_49689776_49715313_49715387_49719767_49719873_49723821
9747	chr11	-	2630	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	-3	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	553.814910432449	2	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGAAGCTTTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	75239139	75191234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191492_75191679_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231858_75231933_75232969_75233021_75239051
9748	chr12	-	2619	9	NIC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-12	0	intron_retention	FALSE	canonical	1	2	junction_4	640.527858488606	4	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860075	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
9750	chr10	-	4013	16	NNC	ENSMUSG00000020097.15	novel	4070	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.057798793643	2	99	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	60983482	60934420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_60936074_60936159_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
9751	chr16	-	1915	14	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	3	112	intron_retention	FALSE	canonical	3	4287	junction_8	386.88579113818	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCGTCTGTTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	87292758	87280763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
9752	chr19	-	6443	4	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1411	4	NA	NA	24	57	intron_retention	FALSE	canonical	3	35	junction_3	25.381533094402	63	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCCCAAAGACTAGACTTA	7789	False	NA	NA	False	NA	NA	NA	4861638	4835245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4835596_4837388_4842849_4843843_4844038_4861199
9754	chr12	+	1998	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	16	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2523.74412332154	4	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTTCATGGCATACAAG	NA	False	NA	NA	False	NA	NA	NA	24758255	24764093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762714_24762765_24762859_24762974_24763078_24763698_24763769
9755	chr12	+	810	1	FSM	ENSMUSG00000064679.3	ENSMUST00000082745.3	72	1	-307	-431	-307	431	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAAAGACTCAAACAAT	5314	False	NA	NA	False	NA	NA	NA	109623251	109624061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109623300_109624100
9759	chr2	+	4220	34	NIC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-9	0	intron_retention	FALSE	canonical	3	86	junction_33	52.1503442194187	1	106	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	180961522	180998409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716_180997873_180997950
9760	chrX	-	3828	5	NNC	ENSMUSG00000079432.2	novel	3698	5	NA	NA	39	161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	91.6801505234366	492	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	NA	NA	NA	134078342	134068211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134070935_134071511_134072097_134073399_134073700_134077924_134078052_134078249
9761	chr6	+	3202	18	NNC	ENSMUSG00000004535.13	novel	3285	18	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	157.391276253897	537	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	NA	False	NA	NA	False	NA	NA	NA	52690733	52743765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710266_52713828_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
9762	chr3	+	4074	23	NNC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	13	-6	intron_retention	FALSE	non_canonical	0	0	junction_22	78.238879810805	47	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCACTCTGCCTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	88243579	88269639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331_88268384_88268738
9763	chr9	-	3049	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	485	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854016	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
9765	chr10	+	3563	24	FSM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	27.5095446574272	511	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9093	False	NA	NA	False	NA	NA	NA	41352309	41363026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
9766	chr11	+	2651	10	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-3	44	intron_retention	FALSE	canonical	3	4673	junction_2	275.330822336322	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGGAGCATTCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	22940646	22952899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22952402_22952816
9769	chr10	-	3065	12	FSM	ENSMUSG00000020184.16	ENSMUST00000105263.9	3145	12	55	25	8	-5	multi-exon	FALSE	canonical	3	51	junction_9	142.979973168527	405	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAAGAGATTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	117546608	117524804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545558_117545690_117545850_117545934_117546456
9770	chr15	-	2271	5	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-77	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1143.66308412924	39	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283872	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250604_81273860_81273925_81276465_81276524_81283685
9771	chr7	-	3481	30	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	239.084679449942	1	99	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28038172	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014424_28014476_28014696_28014773_28014870_28015147_28015341_28015429_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
9772	chr10	-	3016	17	NIC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	0	-12	combination_of_known_junctions	FALSE	canonical	2	4	junction_15	161.576788536442	66	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTCTCCTCACTGCAGT	NA	False	NA	NA	False	NA	NA	NA	116417405	116321082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373354_116384937_116385081_116417357
9773	chr7	-	2287	15	NIC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_14	296.821538150795	32	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102576	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102483
9774	chrX	+	3877	5	NNC	ENSMUSG00000094004.8	novel	3677	5	NA	NA	50	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	89.5666651159906	17	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTATTGGTTCTTCGT	NA	False	NA	NA	False	NA	NA	NA	134274082	134284145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134274160_134274357_134274485_134278675_134278976_134280196_134280862_134281437
9775	chr4	+	3440	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	17	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	658.554836154304	543	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAAAAATCTTG	4723	False	NA	NA	False	NA	NA	NA	135583459	135597204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135591039_135591142_135594436
9777	chr2	+	3320	20	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-13	-3	intron_retention	FALSE	canonical	0	0	junction_12	91.8946162656712	757	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTTGTTGTATGCTGT	NA	False	NA	NA	False	NA	NA	NA	130266245	130285651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
9778	chr11	+	1830	5	ISM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	140	2861	-52	-2861	intron_retention	FALSE	canonical	3	2561	junction_3	219.812420031262	6	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAAGAACAAGCAATCCCA	NA	False	NA	NA	False	NA	NA	NA	97206681	97217885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534
9779	chr15	-	3326	12	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	13358	-364	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	221.411923051631	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	51841548	51825999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835313_51835513_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440
9780	chrX	-	3648	22	NNC	ENSMUSG00000025665.17	novel	4135	23	NA	NA	4	-398	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	108.513727357157	1	43	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAACCAGTGTGTAATGT	NA	False	NA	NA	False	NA	NA	NA	110372888	110298287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319656_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110372546
9781	chr8	+	2613	17	NNC	ENSMUSG00000005410.7	novel	2604	17	NA	NA	-19	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	580.252194631782	3	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCTGTGTGAATACAAGG	NA	False	NA	NA	False	NA	NA	NA	75836177	75854324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849626_75849733_75850468_75850606_75851449_75851572_75852864_75852993_75853850
9782	chr19	+	4878	8	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-7	0	intron_retention	FALSE	canonical	3	204	junction_1	56.8951775152323	1	111	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	NA	NA	NA	38043451	38062869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38043530_38045857_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
9784	chr18	-	5530	28	NNC	ENSMUSG00000024456.17	novel	5741	29	NA	NA	-6	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	23.129800135777	16	33	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGAATCTCCCTCTAGC	NA	False	NA	NA	False	NA	NA	NA	38068440	37976661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986760_37987530_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993576_38022750_38022866_38023529_38023991_38024056_38024223_38024845_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
9787	chr6	-	3148	11	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	36	2702	intron_retention	FALSE	non_canonical	0	0	junction_1	2246.77302814503	2010	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCACAGCCTTCACGATAA	9305	False	NA	NA	False	NA	NA	NA	128415604	128403995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128404446_128406788_128406857_128406906_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411836_128412676_128412820_128413532_128413678_128415368
9788	chrX	-	3109	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3359	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	469.916058504938	1	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227933	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087089_23094812_23094927_23101464_23102261_23113599_23113702_23114362_23114495_23127685_23127813_23181368_23181441_23227732
9790	chr4	-	2503	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	232.526471611298	3	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726965	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698126_147698294_147698506_147699736_147699864_147702873_147702962_147725321_147725463_147726761
9791	chr3	-	4094	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	3	-12	combination_of_known_splicesites	FALSE	canonical	3	88	junction_7	242.301296668728	45	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGCGAGACAATTATTG	NA	False	NA	NA	False	NA	NA	NA	10416370	10405026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10416118_10416301
9792	chr1	-	2917	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	61	885	-42	-885	multi-exon	FALSE	canonical	3	395	junction_2	27.5	7	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	6333	False	NA	NA	False	NA	NA	NA	37469123	37457049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
9795	chr9	+	2600	22	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	-1	intron_retention	FALSE	canonical	3	468	junction_2	38.7250907430986	5	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGCGTCTCTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	108385254	108393133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
9797	chr11	-	3420	5	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	600.382534306254	2	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96714862	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96709764_96709896_96711343_96712076_96712236_96712929_96713146_96714770
9798	chr10	-	3691	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-4	-3	intron_retention	FALSE	canonical	3	139	junction_20	277.67891817209	5	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAAGTCTTTTCCGGAGT	NA	False	NA	NA	False	NA	NA	NA	121462241	121425526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451053_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
9801	chr5	+	3657	4	NIC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	5956	junction_2	214.792923533342	14	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_104583063_104584240_104584309_104584406_104586134_104587130
9802	chr8	-	4083	16	NNC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	-5	3	intron_retention	FALSE	non_canonical	0	0	junction_3	146.280309299949	8	101	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTCCTCTAGCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	73228984	73214329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215828_73215947_73216020_73216165_73216247_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73224072_73224714_73224900_73228455_73228630_73228901
9803	chrX	-	4441	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	103	302	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	62.1628144548264	467	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTTGTGTAAACAATGT	NA	False	NA	NA	False	NA	NA	NA	110373049	110297586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
9804	chr12	+	1959	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1908.10962997413	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763136_24763273
9805	chr18	+	4147	21	FSM	ENSMUSG00000024498.17	ENSMUST00000025375.15	4101	21	5	-51	5	51	multi-exon	FALSE	canonical	3	254	junction_5	111.046881991346	396	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTTTTTTATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	42644570	42708670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
9806	chr11	-	4042	30	FSM	ENSMUSG00000002812.5	ENSMUST00000002889.5	4060	30	18	0	18	0	multi-exon	FALSE	canonical	3	227	junction_19	35.2603363548522	404	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTACTTTTAATATTAAA	NA	False	NA	NA	False	NA	NA	NA	60618071	60604968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
9807	chr6	-	2973	15	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	1	-958	combination_of_known_junctions	FALSE	canonical	3	34	junction_13	326.611866325291	929	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCAAACTTTTCTTTGC	NA	False	NA	NA	False	NA	NA	NA	148113518	148081534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148107597_148107709_148108030_148108174_148113467
9809	chr14	+	4915	25	NNC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	232	192	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	46.862368668498	11	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTCTGCATCACCCCAT	NA	False	NA	NA	False	NA	NA	NA	57124341	57198001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_57124414_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159077_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
9810	chr8	+	2596	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	426.059380316354	2	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTATGATAGTAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	75836253	75854311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844298_75845910_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
9811	chr2	+	6871	41	ISM	ENSMUSG00000057110.16	ENSMUST00000156933.8	7189	43	42	2519	42	-2519	5prime_fragment	FALSE	canonical	3	34	junction_10	27.8419535054565	34	35	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCAAGGTTGCCTCTTA	NA	False	NA	NA	False	NA	NA	NA	34999545	35065603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_34999642_35001566_35001815_35003335_35003467_35006683_35006815_35008066_35008209_35009948_35010136_35012671_35012866_35015987_35016108_35017316_35017543_35017939_35018050_35019632_35019828_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037243_35037424_35038502_35038620_35038882_35039028_35039457_35039607_35041691_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050532_35050674_35050802_35050930_35051940_35052106_35052772_35052933_35055458_35055575_35055659_35055878_35057742_35057901_35059253_35059328_35060470_35060660_35061032_35061259_35061849_35062056_35063028_35063170_35065120_35065385_35065549
9812	chrX	-	2717	1	NIC	ENSMUSG00000031176.9	novel	2176	5	NA	NA	-1366	-1942	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTAGAAGACATTTATTT	NA	False	NA	NA	False	NA	NA	NA	9527235	9524518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_9524500_9527200
9813	chr9	+	2856	7	NNC	ENSMUSG00000032092.6	novel	3107	6	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	200.984797656163	115	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	NA	False	NA	NA	NA	44953910	44965313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175_44965084_44965146
9814	chr13	+	3240	17	Antisense	novelGene_ENSMUSG00000116207.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCGTTGTGCCTCCAACC	5681	False	NA	NA	False	NA	NA	NA	119472076	119545518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_119472941_119474909_119475028_119476362_119476479_119491191_119491279_119494040_119494200_119502861_119503042_119505010_119505170_119506444_119506681_119508930_119509128_119511164_119511190_119518206_119518400_119523114_119523211_119525737_119525818_119531146_119531360_119533278_119533512_119541086_119541291_119545438
9815	chr16	-	2156	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	758.69763329368	70	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGTTTTTACAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073781_22077765_22078012_22084490
9816	chrX	+	7863	23	FSM	ENSMUSG00000033792.13	ENSMUST00000055941.7	4866	23	-56	-2941	-10	2941	multi-exon	TRUE	canonical	2	29	junction_4	14.4839609212032	97	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAATGTTGTCAA	NA	False	NA	NA	False	NA	NA	NA	105070871	105171473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105070986_105113375_105113514_105128719_105129210_105129694_105130421_105131940_105132124_105135689_105135854_105138458_105138621_105140382_105140460_105140995_105141222_105142391_105142626_105144132_105144225_105145465_105145594_105145952_105146108_105146317_105146453_105148752_105148948_105150789_105150973_105153366_105153584_105158695_105158843_105161857_105162001_105163840_105164045_105165195_105165314_105166948_105167052_105167944
9817	chr4	-	3498	17	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	404.647913121704	1	105	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACATTGCCACTCACAT	NA	False	NA	-73	True	NA	NA	NA	135074515	135047801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054532_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069778_135069841_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425
9819	chr14	-	4022	19	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	30552	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	140.175738465403	34	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	14554480	14518184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545525_14550625_14550664_14552389_14552580_14553669_14553827_14554388
9820	chrX	-	2549	11	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	223	-2	intron_retention	FALSE	canonical	3	22	junction_10	434.911301301771	2	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAAACCTGTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	100128735	100122817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128447
9821	chr8	+	6094	10	NIC	ENSMUSG00000031976.15	novel	6073	10	NA	NA	-11	-3	combination_of_known_junctions	FALSE	canonical	3	104	junction_1	31.2552217859494	115	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACATAGTATTCTGCTGG	NA	False	NA	NA	False	NA	NA	NA	124748235	124775240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_124748547_124750198_124750338_124751794_124751972_124754597_124757929_124761766_124761928_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
9822	chr12	+	5746	25	NIC	ENSMUSG00000034574.11	novel	5835	26	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_1	18.350560088334	174	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTACAGATCTGTTTTCT	1857	False	NA	NA	False	NA	NA	NA	71877905	72039099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_71877971_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
9823	chr1	-	2895	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-10	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	831.713045373072	1	81	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTCTGTGATTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	128287411	128259338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273621_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
9826	chr9	-	3503	25	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_24	147.218227802206	673	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCCTGTGTCTTTATTGA	9718	False	NA	NA	False	NA	NA	NA	107648182	107617694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647647
9827	chr4	+	2188	8	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-32	-22	multi-exon	FALSE	non_canonical	0	0	junction_2	34.8787988933807	1	63	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGCTGAAAGATTCAAC	NA	False	NA	NA	False	NA	NA	NA	147209680	147669633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147449058_147449108_147665698_147665826_147667290_147667445_147667771_147668493_147668576_147668844_147668961
9830	chr15	+	3167	20	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	79.9549041873049	23	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775627	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57779365_57779513_57786352_57786536_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
9831	chr17	+	2170	14	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-64	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	358.408200059405	9	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165684	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176314_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
9832	chr4	-	4702	10	Intergenic	novelGene_2134	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	276	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGAAGAAAGATGAAACCG	NA	False	NA	NA	False	NA	NA	NA	147671101	147216508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147216814_147217299_147217437_147219029_147219131_147393106_147393218_147472757_147472909_147596801_147597058_147597317_147597348_147598686_147599363_147668083_147668521_147668603
9833	chrX	-	3069	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	76	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800276	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766800_149768557_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
9834	chr3	+	2603	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-2	-350	intron_retention	TRUE	canonical	0	0	junction_15	347.126259450362	1	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4847	False	NA	NA	False	NA	NA	NA	34074244	34124121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065_34123226_34123385
9836	chr18	-	3817	8	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	-292	0	intron_retention	FALSE	canonical	3	82	junction_4	46.2782180878624	339	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	70605872	70585282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70601589_70602519_70602849_70604743_70605051_70605361
9837	chr11	-	6979	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-5	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.11702933355	4	154	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGAAAGCTGAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	95873425	95847997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95853346_95854371_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859186_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864001_95864760_95865047_95866085_95866150_95870107_95870153_95870442_95870496_95871870_95871957_95873327
9838	chr4	-	4977	17	NNC	ENSMUSG00000029016.14	novel	5198	23	NA	NA	-14	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	50.2695468822825	5	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGACCTTGTCTCCACG	7451	False	NA	NA	False	NA	NA	NA	148123241	148088720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095159_148102082_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108682_148109697_148110178_148110389_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
9839	chr19	-	1969	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	49	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	1114.25793692484	12	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902374	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884347_15886726_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
9840	chr9	-	3800	8	NNC	ENSMUSG00000004661.16	novel	3119	8	NA	NA	3	0	intron_retention	TRUE	non_canonical	0	0	junction_1	83.0971892252852	1	64	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTATGGGATCCTTTCA	NA	False	NA	NA	False	NA	NA	NA	57744050	57697635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57699894_57703442_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
9842	chr3	+	4531	12	NIC	ENSMUSG00000028060.15	novel	1922	14	NA	NA	-4	-4	intron_retention	FALSE	canonical	2	9	junction_9	113.551604753736	53	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTTTTAATGTGCAT	15	False	NA	NA	False	NA	NA	NA	88593116	88620227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607671_88607822_88616086_88617250_88618067
9843	chr14	-	5086	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	23	77	23	-77	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	212	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATTGTCTTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	58127710	58070236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
9844	chr7	-	3095	6	Antisense	novelGene_ENSMUSG00000072244.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	51	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTTCACTATGGCGGCCA	NA	False	NA	NA	False	NA	NA	NA	103884111	103875004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_103875184_103876011_103876138_103877466_103877578_103879927_103879954_103880992_103881106_103881571
9845	chr7	-	5574	3	NIC	ENSMUSG00000040167.17	novel	2231	4	NA	NA	0	-6	intron_retention	FALSE	canonical	3	73	junction_1	3.5	62	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATGACTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	131012226	130990386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_130995667_130998397_130998581_131012115
9847	chrX	+	2371	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-39	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1431.75648767519	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCTTTTCATTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100473301	100492185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473358_100480808_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
9848	chrX	-	2661	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-4	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	551.111334014588	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921413	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158905653_158905837_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913100_158913232_158915064_158915239_158916168_158916229_158921251
9849	chr14	-	4586	31	NNC	ENSMUSG00000025280.9	novel	4687	31	NA	NA	23	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	29.6195130877527	114	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAGTGTTTTTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	24537054	24498761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_24499291_24500762_24500896_24502297_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521016_24521805_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
9850	chr17	-	3054	3	Intergenic	novelGene_145	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	15	629	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGTCTGTTTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	35219819	35215702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35218446_35218974_35219186_35219719
9851	chrX	-	2612	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-6	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	553.41683959481	3	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTACAGTTCTTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	158921358	158905210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158905676_158905858_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911456_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
9852	chr17	-	1839	13	NNC	ENSMUSG00000024045.7	novel	4570	14	NA	NA	-11	4418	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_12	221.974410437079	1	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACCATAATCGAAGGGTA	NA	False	NA	NA	False	NA	NA	NA	32539643	32528409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32532078_32532237_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32539444
9853	chr4	+	3473	28	NNC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-3	6	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_11	355.312548130108	1	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAAGGACGTGTTTCAGA	588	False	NA	NA	False	NA	NA	NA	137321535	137383648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343782_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
9855	chr17	-	3611	9	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_8	149.294538999255	859	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTTGCCGCTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	53996313	53981813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996207
9856	chr2	+	3203	21	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	-15461	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	368.746291506776	1	63	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGCCTGTGTCATGTGG	NA	False	NA	NA	False	NA	NA	NA	30217490	30234270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222943_30223355_30223478_30226335_30226414_30226653_30226740_30226945_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
9857	chr4	-	1608	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	2	True	NA	NA	False	NA	NA	NA	41098180	41092726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093377_41093525_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
9860	chr4	-	2564	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	192	12	0	-12	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	24	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779657	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
9861	chr2	+	3754	30	NNC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	2442	14	intron_retention	FALSE	canonical	1	14	junction_26	67.7461162455058	1	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACTTCCTCCTAGACTA	NA	False	NA	NA	False	NA	NA	NA	180964197	180997824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992967_180993044_180993161_180993368_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996840_180996919_180997102_180997346_180997443_180997606_180997716
9862	chr17	+	1884	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	162	364	-14	-353	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	9	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAATGACTGTCACTCCC	NA	False	NA	NA	False	NA	NA	NA	21165734	21185814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
9865	chr6	+	3155	17	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	290.299138551512	22	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	87864919	87890577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87889168
9866	chr18	-	3911	6	NIC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	-6	3	intron_retention	FALSE	canonical	3	1055	junction_1	137.672945780934	6	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCTTTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	38471996	38460607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38468171_38471143_38471276_38471960
9867	chr16	+	1929	9	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	249	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	836.38320127499	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	7775	False	NA	NA	False	NA	NA	NA	22928229	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916_22932423_22932616
9868	chr17	-	3041	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-12	-1032	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	281.819028533827	1	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8725	False	NA	NA	False	NA	NA	NA	24470333	24442203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445444_24445577_24445657_24445758_24449289_24449378_24450284_24450452_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
9869	chr11	+	1259	12	ISM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	25	2933	-9	187	5prime_fragment	FALSE	canonical	3	1017	junction_9	76.7871373526186	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGCAGAGTACTTCCCC	NA	False	NA	NA	False	NA	NA	NA	3913999	3927071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015
9870	chr15	+	3483	16	Fusion	ENSMUSG00000023048.14_ENSMUSG00000056851.15	novel	3222	14	NA	NA	0	359	multi-exon	FALSE	non_canonical	0	0	junction_8	198.461370436555	2504	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATAATGATTTTTAGAT	3286	False	NA	NA	False	NA	NA	NA	102368517	102408855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_+_102368582_102368804_102369155_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
9871	chr5	+	4630	3	FSM	ENSMUSG00000029464.11	ENSMUST00000156978.3	500	3	37	-4167	37	-8	multi-exon	FALSE	canonical	3	511	junction_2	1.5	5	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAAACTGTGTTTGAGG	8152	False	NA	NA	False	NA	NA	NA	122510626	122520957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122510720_122511973_122512083_122516529
9873	chr4	-	2460	14	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	-15	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	297.571333002445	4	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779672	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122753143_122753242_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
9874	chr3	+	3135	16	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-21	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	246.643386288787	18	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	69629394	69656380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647943_69648010_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
9875	chr13	+	3047	4	NNC	ENSMUSG00000113566.2	novel	478	4	NA	NA	0	1355	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	242.959987560824	16	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGTCTATCCATGTAAA	NA	False	NA	NA	False	NA	NA	NA	62245561	62261216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62246443_62254561_62254689_62254881_62254943_62259238
9876	chr1	+	4004	4	ISM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	138969	2	492	-2	3prime_fragment	FALSE	canonical	3	223	junction_2	11.8415464455544	12	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTAGAGTCTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	152969717	152995005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_152969860_152987887_152987990_152988125_152988194_152991313
9877	chr2	-	3484	14	NNC	ENSMUSG00000045624.16	novel	3396	14	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_13	107.34669817683	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTACCCGTTTGTATA	6995	False	NA	NA	False	NA	NA	NA	140012466	139961807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012285
9878	chr7	-	3114	11	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	30	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	78.70203301059	16	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9634	False	NA	NA	False	NA	NA	NA	3218901	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205857_3207750_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
9879	chr5	+	2951	12	NIC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-45	-415	intron_retention	FALSE	canonical	3	2266	junction_5	189.983644359105	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATATGCATTTTCAAGC	NA	False	NA	NA	False	NA	NA	NA	45650800	45669618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
9883	chr7	-	4141	15	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	-3	intron_retention	FALSE	canonical	3	117	junction_10	21.0703389548785	86	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697703	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684494_140684581_140684640_140686675_140687597_140687709_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
9884	chr12	+	3037	2	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	65	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86565799
9885	chr16	+	2895	26	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	78	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	358.525647618131	1	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGAAAACATTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	48251677	48451264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266749_48270348_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
9886	chr11	+	4278	21	NNC	ENSMUSG00000009090.18	novel	4085	21	NA	NA	2	-150	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	89.496634014917	312	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCACATTTCTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	4936935	4992579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4937052_4959531_4959593_4962881_4962988_4965605_4965742_4966086_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
9887	chr2	-	3677	15	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	8	348	intron_retention	FALSE	canonical	3	183	junction_14	30.3311653557316	2	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGATGGGTGCATAAAG	NA	False	NA	NA	False	NA	NA	NA	11782351	11753917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
9888	chr8	-	3795	13	NNC	ENSMUSG00000033658.17	novel	6612	12	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.332125123752	133	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGTATTTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	111754369	111729819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731178_111733967_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
9889	chr9	+	5179	26	FSM	ENSMUSG00000042185.15	ENSMUST00000086167.12	5161	26	-19	1	-19	-1	multi-exon	FALSE	canonical	3	28	junction_5	11.7439346047226	154	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGGCCTTTAATCAT	NA	False	NA	NA	False	NA	NA	NA	31297468	31332628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308331_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
9891	chr11	-	2094	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-157	1156	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644698	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48644331_48644551
9892	chr11	+	7217	23	FSM	ENSMUSG00000017550.15	ENSMUST00000017694.7	7272	23	35	20	35	-20	multi-exon	FALSE	canonical	3	77	junction_5	19.8640524191917	134	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAAATGCTTGGTGTGTT	6034	False	NA	NA	False	NA	NA	NA	79980260	80026597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_79980663_79984980_79986849_79988778_79988876_79991139_79991302_79992607_79992735_79994085_79994168_79997079_79997265_79999308_79999464_80000189_80000350_80000772_80000962_80002300_80002398_80003574_80003664_80003900_80004041_80004981_80005133_80009790_80009968_80010292_80010430_80011507_80011602_80014892_80014958_80018082_80018264_80022029_80022209_80023290_80024133_80024854_80025014_80025118
9893	chr13	+	2070	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-11	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	591.886847294312	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCACTCTTGGTATTGA	NA	False	NA	NA	False	NA	NA	NA	3588116	3615814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604529_3606417_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
9895	chr7	+	5063	16	FSM	ENSMUSG00000033904.17	ENSMUST00000106557.8	5073	16	5	5	5	-2	multi-exon	FALSE	canonical	3	57	junction_14	14.3789970288458	195	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATCTTGTTGGATCTCT	NA	False	NA	NA	False	NA	NA	NA	118311779	118336242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118332109_118332196_118334490
9896	chr9	+	3595	4	ISM	ENSMUSG00000007656.14	ENSMUST00000164467.8	1047	5	226	-2587	-12	3	3prime_fragment	FALSE	canonical	2	10	junction_3	2782.39097819763	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATTGATTTTAATATG	NA	False	NA	-50	True	NA	NA	NA	74945186	74967579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_74945244_74959514_74959638_74963916_74964199_74964446
9897	chr4	+	2803	25	FSM	ENSMUSG00000017264.17	ENSMUST00000017408.14	2790	25	-13	0	-13	0	multi-exon	TRUE	canonical	3	466	junction_4	49.4747234847138	712	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	148642872	148666858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
9898	chr7	-	2284	16	NIC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	10	-13	combination_of_known_splicesites	FALSE	canonical	3	31	junction_15	300.066703695473	38	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTGTGAAACACAAACT	NA	False	NA	NA	False	NA	NA	NA	143102555	143067337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102483
9899	chr5	+	3901	19	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	6	196	intron_retention	FALSE	canonical	0	0	junction_2	123.788898363402	3	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAATAAAAGTCCTAGGAA	NA	False	NA	NA	False	NA	NA	NA	45827266	45857665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828472_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853887_45856182_45856253_45857189
9900	chr8	-	3262	6	NNC	ENSMUSG00000054408.10	novel	3466	5	NA	NA	26	-136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	396.150981318992	45	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTAAACAAATGCACAAGAA	NA	False	NA	NA	False	NA	NA	NA	54983007	54973603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_54974892_54974933_54976431_54977975_54978092_54979485_54979561_54981374_54981451_54982797
9901	chr18	+	5740	4	NIC	ENSMUSG00000024276.8	novel	5472	4	NA	NA	-10	-77	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	35.3647658929996	103	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAACCCCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	24087738	24097653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_24088241_24089395_24089911_24090111_24090254_24093072
9902	chr5	+	5253	19	Genic_Genomic	ENSMUSG00000102921.2	novel	231	1	NA	NA	-33630	-222	multi-exon	FALSE	non_canonical	0	0	junction_1	0	444	18	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACGGAAAACCGCGAGGG	NA	False	NA	NA	False	NA	NA	NA	9013528	9047167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_9015294_9015386_9016971_9018644_9018769_9018871_9018962_9019044_9019129_9019915_9020040_9023585_9023716_9023943_9024052_9024131_9024217_9026007_9026108_9027452_9027580_9028196_9028290_9033686_9033801_9037770_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046550_9047105
9903	chr5	+	3742	14	NNC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	56	-16	intron_retention	TRUE	canonical	0	0	junction_9	20.1053438685093	2	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGATTTCAGTGGGTATG	8199	False	NA	NA	False	NA	NA	NA	138170385	138178675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174640_138174681_138174981_138175078_138175174_138175417_138175463_138176184_138176443_138176538
9904	chr8	-	2198	17	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	-43	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.666355354511	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTATGGTACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	26337765	26306909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307073_26307248_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
9905	chr6	-	4424	27	NNC	ENSMUSG00000030279.16	novel	3494	26	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	35.2553030129163	214	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTAACTCTTTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	143045865	142956650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_142957863_142958927_142959061_142963642_142963800_142965053_142965156_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
9906	chr8	-	2210	6	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	2095.39863510502	577	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	43760028	43748103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758431_43758596_43758716_43758980_43759877
9907	chr5	+	3834	12	NNC	ENSMUSG00000039191.13	novel	5252	11	NA	NA	2	-90	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	179.13428178071	3	86	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAGTGTGAACAGATATG	NA	False	NA	NA	False	NA	NA	NA	53713177	53813389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803257_53803361_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
9908	chr11	-	2526	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	-24	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.815131191409	43	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTCTTTGACTGTAAA	NA	False	NA	NA	False	NA	NA	NA	75239174	75191176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191436_75191825_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
9909	chr4	+	4380	2	Antisense	novelGene_ENSMUSG00000046312.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCGCCCTCCGGCTACTA	NA	False	NA	NA	False	NA	NA	NA	41495616	41503116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41499873_41502992
9910	chr13	-	2270	10	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1167.55775493597	2116	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCATTTGCCCTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	100923007	100915241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100915838_100915901_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
9911	chr13	-	2891	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	82	408	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	191.57381695772	2	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCCTAGTAACTTAATTA	NA	False	NA	NA	False	NA	NA	NA	9046004	9022107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037827_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
9912	chr5	+	3431	10	NIC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	1115	junction_6	101.321271211923	109	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTGCTATGCTTAATTG	NA	False	NA	NA	False	NA	NA	NA	134611598	134627181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
9913	chr2	+	5081	25	NNC	ENSMUSG00000027598.17	novel	5159	25	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	55.411324930519	3	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCATTTGCCTTTTCGTCT	NA	False	NA	NA	False	NA	NA	NA	154975441	155068772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025651_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155051043_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
9915	chr12	+	2760	25	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	385.205780142972	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTACCTTGGTGTTGA	8026	False	NA	NA	False	NA	NA	NA	76302186	76366569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335855_76336450_76336477_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
9916	chr2	-	2220	10	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-8	-400	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	366.363443645113	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAGTGTGTGGCTGGAA	NA	False	NA	NA	False	NA	NA	NA	154916375	154901629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907337_154907607_154909242_154909319_154910747_154910939_154916284
9917	chr2	+	3751	13	ISM	ENSMUSG00000036617.18	ENSMUST00000114614.8	5898	19	9615	21317	-129	3508	internal_fragment	FALSE	canonical	3	21	junction_12	50.6340355448344	9	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTATTCAGCTACCACC	4667	False	NA	NA	False	NA	NA	NA	20524472	20794018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790279_20793238
9918	chr12	-	3461	20	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	110	-462	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	151.001531793151	3	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAATTGAACTGTGCT	2788	False	NA	NA	False	NA	NA	NA	59058693	59005630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029429_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
9919	chr5	-	2923	14	NNC	ENSMUSG00000029169.12	novel	2375	14	NA	NA	4	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	224.041838865267	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCCCAAGTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	52347852	52307555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314912_52317635_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
9920	chr6	-	4138	8	FSM	ENSMUSG00000030168.14	ENSMUST00000032272.13	4184	8	36	10	22	-10	multi-exon	FALSE	canonical	3	26	junction_7	32.1685611510775	339	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAAATGAGTTTTGTTGT	7361	False	NA	NA	False	NA	NA	NA	119394629	119330120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119394380
9921	chr4	+	3846	11	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	-62	-375	intron_retention	FALSE	canonical	0	0	junction_4	738.346151882706	2	98	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTTCTGCACGGAGTCT	793	False	NA	NA	False	NA	NA	NA	129083632	129113025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129099921_129100003_129101701_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109085_129110470_129110613_129112223
9922	chrX	+	4245	10	NNC	ENSMUSG00000004221.17	novel	727	4	NA	NA	-15025	-3978	intron_retention	FALSE	non_canonical	0	0	junction_1	0	40	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCGCTGGCCCATTTAAC	NA	False	NA	NA	False	NA	NA	NA	73453114	73472496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73453904_73454002_73454096_73454188_73454266_73454362_73454598_73454862_73455049_73455168_73457687_73458512_73458622_73458717_73458759_73471656_73471789_73472431
9924	chr18	+	4007	21	FSM	ENSMUSG00000024260.15	ENSMUST00000025109.8	4015	21	0	8	0	-8	multi-exon	FALSE	canonical	3	84	junction_13	29.4439722184355	607	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTTGTAGATGAGCAGT	6817	False	NA	NA	False	NA	NA	NA	31767435	31856106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
9925	chrX	-	2547	8	NNC	ENSMUSG00000057836.13	novel	1645	9	NA	NA	16	-2	intron_retention	FALSE	canonical	3	133	junction_6	489.420607057207	226	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGTTGGCATGAGTC	NA	False	NA	NA	False	NA	NA	NA	72140649	72129902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72135498_72136875_72136911_72137788_72137859_72138425_72138689_72140586
9927	chr6	-	3080	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	1	-5	1	5	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	1	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACGGGGGCTGACTGGTT	7906	False	NA	NA	False	NA	NA	NA	124806397	124791995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
9928	chr12	+	5424	30	FSM	ENSMUSG00000034601.18	ENSMUST00000149564.8	5763	30	335	4	335	-4	multi-exon	FALSE	canonical	3	69	junction_27	23.3199327353747	89	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTCTGGCTGTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	71183956	71290073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71262815_71262971_71265964_71266074_71289717
9929	chr2	+	2067	8	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	268.044163281702	46	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGACACCCCGCCCTCCTC	NA	False	NA	NA	False	NA	NA	NA	154713344	154734751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720486_154730150_154730283_154734611
9930	chr10	-	3929	6	FSM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	463	-3	-175	3	multi-exon	FALSE	canonical	3	186	junction_4	20.6164982477626	280	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCCTGCTCTGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	34083248	34027385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687_34060157_34083075
9931	chr6	-	3433	16	NIC	ENSMUSG00000053470.14	novel	4853	26	NA	NA	73	-4	intron_retention	FALSE	canonical	3	172	junction_15	78.0330414347381	561	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTCGCTGTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	71586050	71566024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
9932	chrX	-	3174	6	NIC	ENSMUSG00000006423.16	novel	3340	7	NA	NA	24	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	91.2697102000439	4	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTAAACTAGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36127784	36112204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36127276_36127395_36127661
9934	chr10	-	2740	11	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGGCTGAGGGGAAGGGT	NA	False	NA	NA	False	NA	NA	NA	128198341	128173669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173827_128185619_128185672_128186300_128186409_128187066_128187132_128188540_128188673_128188889_128189032_128194265_128194401_128195036_128195167_128195300_128195403_128195810_128196021_128196834
9935	chr2	-	3231	29	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.185576872239523	1	84	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAAGAAGTGATAAATAAT	NA	False	NA	NA	False	NA	NA	NA	146919907	146866425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146866556_146866634_146866746_146867113_146867225_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871551_146871647_146871700_146871782_146871895_146876771_146876817_146878578_146878714_146880086_146880206_146882733_146882870_146883905_146884021_146884094_146884182_146884777_146884851_146889552_146889639_146891211_146891310_146891900_146891983_146893632_146893686_146903165_146903236_146903323_146903456_146905150_146905281_146910711_146910774_146916802_146916946_146919402
9936	chr10	+	6251	29	NNC	ENSMUSG00000001150.8	novel	578	5	NA	NA	-5884	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	64.111699002441	183	49	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGCCTTAGTTTTATGA	5721	False	NA	NA	False	NA	NA	NA	76298876	76351691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_76298989_76305782_76307087_76307256_76307484_76312347_76312427_76312616_76312759_76313553_76313745_76316834_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
9937	chr14	-	2959	10	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	8	1207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	99.0499312916919	26	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	NA	False	NA	NA	NA	21102282	21084874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21085641_21085812_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
9938	chr19	+	3519	5	Fusion	ENSMUSG00000071652.9_ENSMUSG00000071653.10	novel	500	5	NA	NA	-5	-6	multi-exon	FALSE	non_canonical	0	0	junction_4	1396.00770055183	4	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAACAGTCCAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	8866257	8875246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774_8867876_8872122
9939	chr10	+	2608	5	NIC	ENSMUSG00000006728.13	novel	2038	7	NA	NA	23	-17	intron_retention	FALSE	canonical	3	4641	junction_2	458.32923483016	9	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTATGGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	126899507	126903149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126900323_126900453_126900590_126900703_126901873_126901969_126902106_126902797
9940	chr14	-	2204	9	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1465.93818082483	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTGTTAGAAGCTG	8749	False	NA	NA	False	NA	NA	NA	52341461	52311007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312275_52312340_52312439_52312825_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
9942	chr13	+	4269	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	-39	-2482	1	5	multi-exon	TRUE	canonical	3	159	junction_3	87.926617130423	500	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCTGTGGGTCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	54769597	54811881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
9943	chr5	-	2415	3	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45630	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256654	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208744_108252324_108252396_108254452
9944	chr2	-	2637	17	NNC	ENSMUSG00000027620.17	novel	2711	17	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	719.78503464142	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACAAGAAAATTTTCGTT	NA	False	NA	NA	False	NA	NA	NA	156022109	155989170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014841_156014943_156019255_156019306_156021096_156021161_156021806
9947	chr2	+	3560	12	FSM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	29	6	3	-6	multi-exon	FALSE	canonical	1	2	junction_7	5.33195574495097	608	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGCGTGTCGGTGCTGTG	2726	False	NA	NA	False	NA	NA	NA	30023786	30042019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
9948	chr14	-	3142	7	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-115	intron_retention	FALSE	canonical	3	2964	junction_1	118.675561464393	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACTCCTGAGACTTATTC	NA	False	NA	NA	False	NA	NA	NA	63746217	63729910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63731461_63731805_63731897_63733168_63733342_63733438_63734465_63735046_63735090_63737569_63737770_63746158
9949	chr4	-	2593	18	NIC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	191.617717033078	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGGTGTGCTTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	120427460	120397066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
9950	chr19	+	3040	13	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	224.133702656844	81	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10160378	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234_10173542_10173834
9951	chr14	-	2571	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	8	455	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	1121	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTTTATGTTGTAGTGA	NA	False	NA	NA	False	NA	NA	NA	99283521	99271524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_99271702_99271790_99273947_99277950_99278097_99283429
9952	chr10	+	5306	27	NNC	ENSMUSG00000039994.16	novel	4341	29	NA	NA	4	1	intron_retention	FALSE	non_canonical	0	0	junction_2	104.587496282769	1	124	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAAGAGTCATATAGCC	6621	False	NA	NA	False	NA	NA	NA	128067963	128088722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076005_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085593_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128087958_128088063
9953	chr12	-	2694	11	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-12	0	intron_retention	FALSE	non_canonical	0	0	junction_1	592.004763494349	2	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	NA	False	NA	NA	NA	108860075	108825955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827212_108827323_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
9957	chr4	+	3661	24	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	55	-1	intron_retention	FALSE	canonical	3	8	junction_14	45.6154717890832	7	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAACTATCAG	3588	False	NA	NA	False	NA	NA	NA	108477191	108491301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108485146_108485226_108485400_108485759_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
9958	chr5	-	2704	7	NIC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	685	junction_1	57.3953153334157	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACCGTAGCTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	32942986	32893650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
9959	chr14	+	2599	2	FSM	ENSMUSG00000048379.10	ENSMUST00000065562.6	6877	2	-4	4282	-4	1784	multi-exon	FALSE	canonical	3	35	junction_1	0	46	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGGAAGCTTAACATTGC	NA	False	NA	NA	False	NA	NA	NA	47514383	47529277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47514679_47526973
9960	chr8	-	3480	5	Antisense	novelGene_ENSMUSG00000096401.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAATGTTCCCTGATT	NA	False	NA	NA	False	NA	NA	NA	20730270	20717305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20717495_20721118_20721218_20723134_20723720_20727081_20727883_20728464
9961	chr5	-	3223	16	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23732	45630	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	112	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256664	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208730_108221172_108221328_108228785_108228887_108229000_108229082_108234861_108234969_108235181_108235255_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248857_108251891_108252017_108252269_108252396_108254452_108255030_108255600
9962	chr15	-	3550	10	NNC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	0	233	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.452836542281	16	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTTAATTTTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	12824727	12808498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_12810052_12810223_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
9963	chr8	-	2868	8	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	818.335194034766	8917	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGAATGACTAATTGTTT	NA	False	NA	NA	False	NA	NA	NA	94763642	94742130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743925_94746042_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
9964	chr11	-	3147	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	71	-525	at_least_one_novel_splicesite	FALSE	canonical	3	418	junction_14	996.986871241829	1	73	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATTCACATAATAAAGCA	8207	False	NA	NA	False	NA	NA	NA	50216429	50185818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216355
9965	chr5	-	2918	6	NIC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	-2	1	intron_retention	FALSE	canonical	3	685	junction_1	60.4436928057841	6	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACCGTAGCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	32942985	32893651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32895491_32895731_32895879_32896125_32896718_32922116_32922293_32931739_32931811_32942892
9967	chr13	-	4830	4	FSM	ENSMUSG00000046351.12	ENSMUST00000050101.9	4844	4	8	6	1	-6	multi-exon	FALSE	canonical	3	31	junction_1	41.5772373621272	265	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCATTTTTGTCTCCACT	9014	False	NA	NA	False	NA	NA	NA	23553370	23537278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553304
9968	chr8	-	4037	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21249	-11	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	171.228765106801	1	96	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGAGTTTGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	81585876	81491079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789_81502880_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
9969	chr15	+	3167	20	FSM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	9	123	9	-123	multi-exon	FALSE	canonical	1	369	junction_14	161.21684095061	12	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGGAGAACCCACGCCA	NA	False	NA	NA	False	NA	NA	NA	89239947	89256906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
9970	chr2	+	2586	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	116	12	-1	-12	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	900	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTCTTGAACAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	166857228	166876855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
9971	chr16	-	3583	16	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	-556	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_15	272.547488216885	34	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	1717	False	NA	NA	False	NA	NA	NA	21982605	21877758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21982407
9972	chr9	-	2330	10	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	78.43106590354	43	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAACAAAGGCTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	13738346	13719086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13727378_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
9973	chr14	-	2027	11	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	37	2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	1687.99479857019	4	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAAGGAAAGACAATTTT	8821	False	NA	NA	False	NA	NA	NA	52341389	52311906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52335024_52335471_52335498_52335837_52336002_52341345
9974	chr5	-	1667	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	260	6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	458	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125463215_125463899_125465329_125466760
9976	chr4	-	3819	14	FSM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	74	0	13	0	multi-exon	FALSE	canonical	3	315	junction_5	49.639648211447	2	101	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	133914349	133857168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
9977	chr17	-	2453	7	NNC	ENSMUSG00000015120.16	novel	824	7	NA	NA	-25	1406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1809.82010309189	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	4722	False	NA	NA	False	NA	NA	NA	25492382	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488206_25488250_25488376_25488454_25492294
9978	chrX	+	2386	11	Antisense	novelGene_ENSMUSG00000025151.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	20	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCACTGGCAGCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	93579081	93584043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93579286_93579467_93579850_93580477_93580595_93580899_93580969_93581151_93581193_93581282_93581361_93581578_93581672_93581789_93581872_93582052_93582114_93582211_93582890_93583462
9979	chr1	-	1940	12	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	2116	5782	1685	-5	3prime_fragment	FALSE	canonical	3	5903	junction_8	870.888621888894	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTTGCCAGACTTAATA	NA	False	NA	NA	False	NA	NA	NA	86285006	86278222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
9980	chr7	-	2483	18	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	1	13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	506.591951025962	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCATCTGCCTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	33867999	33840125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840638_33840719_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
9983	chr10	-	2758	16	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	-3	-1862	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	174.091342563482	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGTGTGTCGATCTTGT	NA	False	NA	NA	False	NA	NA	NA	62438063	62417891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434486_62434590_62434671_62437906
9984	chr1	-	4684	18	NIC	ENSMUSG00000026274.12	novel	5779	18	NA	NA	-9	3	combination_of_known_junctions	FALSE	canonical	3	33	junction_17	48.1779429495616	97	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGGAGTGTTTAAGTTCT	NA	False	NA	NA	False	NA	NA	NA	93271213	93237556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496_93249945_93251923_93252078_93253085_93253255_93254937_93255199_93258476_93258612_93259280_93259422_93262264_93262436_93263331_93263568_93265066_93265303_93270987
9986	chr19	-	2118	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	-10	0	-10	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	114	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3753	False	NA	NA	False	NA	NA	NA	7017345	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
9988	chr16	-	3110	11	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	26	77	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	361.964418140789	37	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGTACTTGGTGAGCCT	6292	False	NA	NA	False	NA	NA	NA	38370558	38345421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38354952_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
9989	chr6	-	2466	5	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	904.30010920048	48	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847939	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832113_148847789
9990	chr17	+	2223	4	NIC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	0	-176	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	900.946292640256	24	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCCACTGGCTTAGTGCC	NA	False	NA	NA	False	NA	NA	NA	29251646	29262171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29251761_29255214_29255423_29260180_29260268_29260357
9991	chr11	-	3645	21	NNC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	71.0812211487676	347	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATATTGTATAGACCAG	NA	False	NA	NA	False	NA	NA	NA	103844850	103712612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804203_103804695_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
9992	chr5	-	2634	13	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-50	-3	intron_retention	FALSE	canonical	3	1920	junction_7	156.410495349754	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTGCTTGTTAATAAC	2270	False	NA	NA	False	NA	NA	NA	138170130	138162864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166745_138167071_138167210_138167359_138167541_138167610_138167987_138168578_138168659_138169987
9993	chr12	+	2595	14	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	123.227504038178	1	23	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCAAACAGGGCTCCGGG	NA	False	NA	NA	False	NA	NA	NA	85157631	85180852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162110_85165318_85165376_85165555_85165620_85166088_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
9994	chr8	-	3294	16	ISM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	4327	-147	-2568	6	3prime_fragment	FALSE	canonical	3	416	junction_13	59.9513135802711	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73224743	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714
9995	chr1	+	1778	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-15	-545	-15	545	mono-exon	FALSE	NA	NA	NA	NA	NA	9	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60743075	60744853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743100_60744900
9997	chr11	-	2915	20	ISM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	313	-1	30	1	intron_retention	FALSE	canonical	3	632	junction_7	77.1236730312312	313	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTCTGATAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	106146592	106139966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410
9999	chr19	-	3977	21	FSM	ENSMUSG00000024999.8	ENSMUST00000025963.8	3977	21	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	18.6711006638602	227	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTAGTCTTACGAGGTT	2288	False	NA	NA	False	NA	NA	NA	38807681	38776571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
10000	chr18	+	3161	11	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	89.3559734992575	553	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTAGACACGGTGTCC	963	False	NA	NA	False	NA	NA	NA	38429724	38450897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
10001	chr9	-	3597	6	NIC	ENSMUSG00000011114.19	novel	1761	8	NA	NA	-23	-8	intron_retention	FALSE	canonical	3	1666	junction_2	61.0232742484374	28	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTTCGGTTATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	37568556	37560485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_37560800_37561326_37562356_37562585_37562684_37563910_37565733_37566317_37566389_37568293
10002	chr2	+	3267	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	-23	24	-23	-16	multi-exon	TRUE	canonical	3	465	junction_18	67.3624112131124	145	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGTGGGCAAAGTGTT	470	False	NA	NA	False	NA	NA	NA	31462639	31507514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
10003	chr11	+	3045	17	NNC	ENSMUSG00000017421.19	novel	2898	17	NA	NA	-4	133	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	449.142933819514	557	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACAAATAATAGTGTATG	NA	False	NA	NA	False	NA	NA	NA	80274152	80296692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215_80286400_80286617_80286702_80289241_80289297_80293471_80293551_80294426_80294489_80295566
10004	chr14	+	3396	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	62	607	-11	1	multi-exon	FALSE	canonical	3	533	junction_6	51.0289194210886	1	80	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTTGTGTTTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	31881883	31901205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
10005	chr3	+	3218	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	1	21	junction_2	137.708078168637	9	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	54600239	54636184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600979_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
10006	chr13	+	1990	7	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2_ENSMUSG00000113350.3	novel	1525	4	NA	NA	-35	-1190	intron_retention	FALSE	canonical	0	0	junction_5	54.6951145492498	9	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGATAGCATTGGAAATGT	NA	False	NA	NA	False	NA	NA	NA	66261258	66340916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840_66326525_66334416_66334495_66340135
10007	chr4	-	3004	13	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	-15	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	354.998356803709	23	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080477	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052465_135065175_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
10008	chr15	+	3691	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	60	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	228.172922699126	1	146	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGGTTAATGTTGCAGT	NA	False	NA	-34	True	NA	NA	NA	101982358	102005604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990418_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
10009	chr5	+	3901	23	NNC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	333.388293334111	1	114	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTGCATGTGCGATTT	NA	False	NA	NA	False	NA	NA	NA	139186429	139235542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186455_139195838_139195898_139200912_139201010_139209354_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
10011	chr12	-	2473	11	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	592.004763494349	17	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860071	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826021_108826345_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
10012	chr7	+	3595	21	Intergenic	novelGene_2956	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.653834841531101	2	37	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATACGCCGCCGTGAC	NA	False	NA	NA	False	NA	NA	NA	44183564	44198201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_44183911_44183986_44184140_44184439_44185259_44185352_44185453_44187033_44187184_44187417_44187530_44187750_44187864_44188020_44188116_44188195_44188389_44188477_44188597_44188791_44188924_44189945_44190056_44190269_44190434_44190697_44190828_44190912_44190993_44191074_44191246_44191321_44191452_44191530_44191674_44192187_44192302_44192663_44192863_44198179
10013	chr11	-	4602	12	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCCCTTCCAGCAAGCT	1331	False	NA	NA	False	NA	NA	NA	50277350	50268567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50268628_50269115_50269252_50270291_50270449_50270645_50273541_50273624_50273697_50273752_50273889_50274005_50274142_50274506_50274565_50274654_50274715_50275468_50275563_50275966_50276016_50276601
10014	chr2	+	3502	22	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	176.364418642949	2	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428744	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454819_118457380_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469061_118470132_118470221_118471568
10015	chr19	+	2655	19	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1337.93481913242	16	33	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCTTATTGGTCTCTG	640	False	NA	NA	False	NA	NA	NA	10582960	10607182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10587155_10587308_10588065_10588181_10589007_10589106_10590236_10590396_10591459_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600803_10606969
10017	chr2	+	4120	5	NNC	ENSMUSG00000095315.3	novel	2159	4	NA	NA	31	24147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	56.2005338052941	17	92	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTCTTGGATATTTT	NA	False	NA	NA	False	NA	NA	NA	150153381	150229138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089_150170901_150229114
10018	chr1	-	4854	26	NIC	ENSMUSG00000040648.16	novel	5882	28	NA	NA	319	-116	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	59.794367627729	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGTGACTTGAATTTAA	9153	False	NA	NA	False	NA	NA	NA	97697817	97633888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_97635556_97639447_97639574_97640728_97640870_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97697579
10019	chr2	-	3721	4	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	42	-98	intron_retention	FALSE	canonical	3	182	junction_3	33.9247533357118	12	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAAACAATGCAGGCT	NA	False	NA	NA	False	NA	NA	NA	106804700	106792969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804616
10021	chr11	+	1997	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	12	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAACACAGGTGTAACTAT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655601_75655647
10022	chr6	-	2923	17	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	169.795913801687	15	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	20	False	6217138	NA	False	NA	NA	NA	6217118	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
10023	chrX	-	4304	10	NIC	ENSMUSG00000031386.15	novel	8262	26	NA	NA	-699	-2	combination_of_known_junctions	FALSE	canonical	3	139	junction_8	113.119515077453	5	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACCATCTGGTATTTACC	NA	False	NA	NA	False	NA	NA	NA	72993558	72986404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72992025_72992507_72992672_72992803
10024	chrUn_JH584304v1	-	3754	8	Intergenic	novelGene_4632	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_2	311.923263718786	1	62	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATAAAGTACTTCGAGAG	NA	False	NA	NA	False	NA	NA	NA	60487	52215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_53770_54335_54480_54720_54868_55111_55702_56985_57152_57410_58836_59591
10025	chr10	+	4543	8	NNC	ENSMUSG00000025373.15	novel	3283	8	NA	NA	-11	299	intron_retention	FALSE	non_canonical	0	0	junction_7	46.3553268409426	476	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTAAGTATTTTGCCTG	215	False	NA	NA	False	NA	NA	NA	128247514	128277609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951_128277405_128277507
10029	chr15	+	1185	3	ISM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	1947	1018	1885	-1018	intron_retention	FALSE	canonical	3	2223	junction_2	4650	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGTCTTAATTCTACA	NA	False	NA	NA	False	NA	NA	NA	103150805	103152364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_103150900_103151070_103151146_103151348
10030	chr2	+	2655	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	47	12	47	-12	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	292	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTCTTGAACAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	166857159	166876855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
10031	chr8	-	3554	26	NNC	ENSMUSG00000039509.9	novel	5808	26	NA	NA	6	-2183	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	90.123524121064	1	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACTTAGGTCTGGATC	NA	False	NA	NA	False	NA	NA	NA	124675988	124626044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656086_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
10032	chr1	-	2037	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2068.03757419541	28	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287096	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284439_86285015_86285175_86285828_86285946_86286927
10035	chr6	+	3566	2	ISM	ENSMUSG00000043131.15	ENSMUST00000038658.15	4119	4	12320	79	12040	-79	3prime_fragment	FALSE	canonical	3	261	junction_1	0	21	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTTGAAGTGTGTTAAC	NA	False	NA	NA	False	NA	NA	NA	83315381	83320678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83315427_83317157
10037	chr11	+	5680	4	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8363	-4	intron_retention	FALSE	canonical	3	288	junction_1	102.35993139679	20	68	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACAAAAATCTCTGTTCA	9493	False	NA	NA	False	NA	NA	NA	104200495	104222912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_104200605_104201094_104201361_104212176_104213367_104218797
10038	chr5	+	2444	13	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	16	-2	intron_retention	FALSE	canonical	3	792	junction_7	88.5159668584651	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCAACCCAGGTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	33815945	33829540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826206_33826821_33826992_33828747_33828855_33829008
10039	chrX	-	1601	8	ISM	ENSMUSG00000031386.15	ENSMUST00000114372.3	8262	26	10	12398	10	-74	5prime_fragment	FALSE	canonical	3	305	junction_5	29.5628006737093	8	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCCTCCCAAGAGCCC	NA	False	NA	NA	False	NA	NA	NA	73009947	72998800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
10040	chr10	-	3736	20	NIC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	20	-3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_19	51.4078795818549	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTGGTTTTGTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	78020963	78006745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78020904
10042	chrX	+	3372	15	NIC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	-3	1	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	80.3753947525774	375	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGGGCTATGACTGTG	NA	False	NA	NA	False	NA	NA	NA	70258684	70358902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_70258754_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
10043	chr13	-	2307	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	19	-145	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	189.553051610888	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGACTTACATTTTG	NA	False	NA	NA	False	NA	NA	NA	9046067	9022660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023181_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
10044	chrX	+	3713	13	NIC	ENSMUSG00000031256.12	novel	4502	14	NA	NA	0	-655	intron_retention	FALSE	canonical	3	451	junction_8	81.1700461308782	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCATTAGGATTATGGGC	NA	False	NA	NA	False	NA	NA	NA	132960059	132986140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132982066_132984980
10045	chrUn_JH584304v1	+	3773	8	Intergenic	novelGene_4658	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	89	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAAAATGAATAACGCAC	NA	False	NA	-45	True	NA	NA	NA	52675	60516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_54478_54718_54868_55111_55249_55464_55704_56986_57145_57407_57500_58562_58838_59595
10047	chrX	-	3087	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	386.794742517923	1	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231323	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23101672_23101823_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
10048	chr3	+	3404	23	NNC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-68	-205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	119.085678233491	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTACTAGGCCTGTGTGCA	NA	False	NA	-59	True	NA	NA	NA	63148889	63288839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63148988_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249409_63250939_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
10049	chr10	+	4699	16	Antisense	novelGene_ENSMUSG00000034667.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	116	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACATTTTCCAGCATTC	NA	False	NA	NA	False	NA	NA	NA	121423330	121445760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_121426124_121429569_121429633_121432091_121432160_121435490_121435542_121436695_121436812_121437146_121437263_121438133_121438326_121438933_121439224_121440253_121440489_121441485_121441557_121442145_121442241_121442625_121442744_121442901_121443043_121443409_121443543_121445030_121445094_121445606
10050	chr4	+	2415	4	Antisense	novelGene_ENSMUSG00000096065.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAAATGGGTAAATATTG	NA	False	NA	NA	False	NA	NA	NA	147696393	147725462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147698506_147699736_147699866_147702875_147702956_147725368
10051	chrX	+	3084	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	65	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	195.216668089587	1	68	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799488	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809657_150816706_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
10052	chr6	-	3188	17	ISM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	152	-898	64	561	3prime_fragment	FALSE	canonical	3	534	junction_12	65.1210411464682	1477	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTATTTACATTTCA	NA	False	NA	NA	False	NA	NA	NA	97182456	97160069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266
10055	chr2	+	3103	7	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	3	-1518	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	51.3379326943863	11	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCAAGGTTAGATTTAAGT	NA	False	NA	NA	False	NA	NA	NA	152068798	152122254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092321_152092532_152096129_152096258_152115063_152116114_152117317_152117467_152118866_152118954_152120888
10056	chr15	+	4582	36	NNC	ENSMUSG00000022191.17	novel	4519	35	NA	NA	-19	-67	intron_retention	FALSE	non_canonical	0	0	junction_14	217.39104988805	2	156	19	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTGAAATAAAACTCAAACC	34	False	NA	NA	False	NA	NA	NA	12824929	12935309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12825025_12826150_12826254_12827312_12827379_12830388_12830523_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865172_12866633_12866731_12867681_12867757_12878743_12878914_12881708_12881810_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
10057	chr16	-	3757	23	FSM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	52	16	0	-16	multi-exon	FALSE	canonical	3	82	junction_12	24.8770530528646	210	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTTCATAGTTT	NA	False	NA	NA	False	NA	NA	NA	10994205	10954471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
10058	chr10	-	2747	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	66	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1147.67329243089	2	83	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATACTCAGTGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	86541307	86526709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527494_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537889_86538772_86538890_86539323_86539466_86540157_86540261_86541170
10059	chr4	+	2292	9	ISM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	13985	11605	13985	-11166	internal_fragment	FALSE	canonical	3	463	junction_6	29.2956374738629	2	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTACAATGTAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	40984890	41001003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684
10060	chr6	-	3198	12	NNC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	-15	-506	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	357.878621096618	1	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTACCTCCTGAGATAG	NA	False	NA	NA	False	NA	NA	NA	148113535	148081082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148096698_148096789_148097495_148097598_148100853_148100895_148103993_148104041_148106273_148106383_148108030_148108174_148113467
10061	chr2	+	3038	20	NIC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	3	-16	intron_retention	FALSE	canonical	3	666	junction_11	73.7272806453442	245	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACCTTCTTGAACAAG	NA	False	NA	NA	False	NA	NA	NA	166857232	166876851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
10062	chr6	-	1032	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	71	125	71	-125	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGATATTGTACATAAAG	NA	False	NA	NA	False	NA	NA	NA	125471683	125437353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
10064	chr11	-	3706	17	NIC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	5	-2	intron_retention	FALSE	canonical	3	179	junction_16	37.7325601271634	8	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACATTTTGTGACTGGCT	3605	False	NA	NA	False	NA	NA	NA	54846925	54801616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54831709_54846846
10066	chr17	+	2820	1	NIC	ENSMUSG00000061950.18	novel	3850	20	NA	NA	1143	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGACACCACCCACTTTG	NA	False	NA	NA	False	NA	NA	NA	66146027	66148847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66146000_66148800
10067	chr3	+	3812	7	ISM	ENSMUSG00000027751.14	ENSMUST00000029315.13	2112	10	21959	3	2544	-3	3prime_fragment	FALSE	canonical	3	91	junction_3	173.585153615036	3	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGTCGTGGTGTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	54622202	54636180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
10068	chr14	+	4027	6	FSM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	715	176	-82	-176	multi-exon	FALSE	canonical	3	223	junction_4	16.2357629940819	235	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTAATGTCTTGTTTTAT	6317	False	NA	NA	False	NA	NA	NA	31217070	31231639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
10069	chr8	+	4305	33	NNC	ENSMUSG00000004565.16	novel	4263	31	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_1	57.0968116311016	1	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGAAGCAGCCTGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	3566871	3594258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3567002_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
10070	chr8	-	4896	13	NIC	ENSMUSG00000038225.16	novel	1833	14	NA	NA	-16	8	intron_retention	FALSE	canonical	3	31	junction_7	35.2230984819148	8	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAATAGTGTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	47070263	47028620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
10071	chr10	-	1988	8	NIC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	-1393	-2	intron_retention	FALSE	canonical	3	1924	junction_2	89.3993562502504	6	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGGCTGCTTCTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	127356042	127352993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355581_127355839
10072	chr12	+	1744	5	Antisense	novelGene_ENSMUSG00000076432.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGAGCCGGATCCGGAGTC	NA	False	NA	NA	False	NA	NA	NA	21440368	21467109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_21441417_21444965_21445065_21446284_21446449_21448243_21448365_21466797
10073	chr3	-	5107	14	Fusion	ENSMUSG00000106365.2_ENSMUSG00000039735.17	novel	5198	14	NA	NA	-64	-7	intron_retention	FALSE	canonical	2	3	junction_13	23.3496702458882	29	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGTCAGTTAAGATGTGT	NA	False	NA	NA	False	NA	NA	NA	122423376	122332380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122423274
10074	chr12	-	1652	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	25	1154	-12	-1150	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	351	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGACCTGGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	108860075	108827109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
10075	chr1	+	3054	16	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-15	4	combination_of_known_junctions	FALSE	canonical	3	6	junction_15	140.598182381171	607	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGAAGTTTAAATGCTAA	9751	False	NA	NA	False	NA	NA	NA	175708344	175736302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175734171_175734227_175735995
10077	chr17	-	2358	16	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	491.668786436108	499	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5755	False	NA	NA	False	NA	NA	NA	33904378	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
10078	chr11	-	2216	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1126.59438104771	5	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCATTCTCTTCATTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106671187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106671405_106672702_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
10080	chr10	-	2868	17	NIC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	100	junction_15	145.637593339598	905	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417414	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116417357
10081	chr11	-	2963	7	NNC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	94	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.650707657592	26	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCAAAACCTTTCTCTAA	NA	False	NA	NA	False	NA	NA	NA	40646044	40639789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40641436_40641479_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
10082	chr11	-	1835	2	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	75	258	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCAGACCTTCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	48644466	48642435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48643685_48643880
10083	chr14	-	2202	12	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11268	30031	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATCCTCACTGTACAAAG	NA	False	NA	NA	False	NA	NA	NA	19861855	19831387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19831406_19841595_19841717_19847228_19847349_19848461_19848712_19852403_19852626_19853114_19853287_19855365_19855493_19855907_19856081_19857992_19858151_19860045_19860170_19861019_19861133_19861251
10087	chr3	-	2597	6	ISM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	24613	154	3069	-154	3prime_fragment	FALSE	canonical	3	308	junction_2	305.651173725867	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTCCTTTCTGTC	6087	False	NA	NA	False	NA	NA	NA	104747208	104730248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097
10090	chr9	-	4128	14	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	-973	28	intron_retention	FALSE	canonical	0	0	junction_4	62.2209272430285	1	88	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACGTCCTGAGTTCTAG	7438	False	NA	NA	False	NA	NA	NA	44271907	44259196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264378_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135
10091	chrX	-	2609	13	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.38192699598142	3	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGCGGCAGAGCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	20539748	20529169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20529364_20534686_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673
10092	chr19	-	2009	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-43	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.93458700951	30	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCCATTCATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	15902337	15882498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883234_15883298_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
10093	chr6	+	2297	1	NIC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	5839	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAATGAGAGATTTGTT	NA	False	NA	NA	False	NA	NA	NA	65090275	65092572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_65090300_65092600
10094	chr11	+	3467	3	NIC	ENSMUSG00000020328.11	novel	1577	4	NA	NA	-40	-13	intron_retention	FALSE	canonical	3	1122	junction_1	12.5	24	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTCACCTCAATATTTTA	NA	False	NA	NA	False	NA	NA	NA	40624453	40630860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_40626894_40627319_40627472_40629985
10097	chr8	+	2467	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	448.684914326022	2	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGATAGTAGTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	75836196	75854314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75854011
10098	chr17	-	3665	1	NIC	ENSMUSG00000008668.16	novel	527	5	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	66	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	34174637	34170972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34171000_34174600
10099	chr5	+	2338	8	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	995.176366278862	6	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCTTTCATTTATTCAG	NA	False	NA	NA	False	NA	NA	NA	34493799	34510779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574_34509643_34510183
10100	chr18	+	3038	13	NNC	ENSMUSG00000024404.8	novel	3790	13	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	114.556633252825	782	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTGGTTCATTGTGTGGT	5523	False	NA	NA	False	NA	NA	NA	12261815	12289755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12262031_12268908_12269025_12269749_12269896_12270029_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
10101	chr11	-	2315	10	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-6	intron_retention	FALSE	canonical	3	2002	junction_4	409.014835675271	29	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACTTGCTGTTTTCTT	9743	False	NA	NA	False	NA	NA	NA	106890290	106879460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
10102	chr14	+	2015	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-24	1270	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2965.53763928229	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTGGCAGGGTGCACGG	NA	False	NA	NA	False	NA	NA	NA	63359938	63380582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63367085_63367176_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
10105	chrX	-	1289	5	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCGAAGCTCTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	100492181	100487914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100487966_100488291_100488396_100488901_100488939_100489719_100489834_100491198
10106	chr17	-	2800	10	NNC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	170.615226622818	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGACTTACTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	50600627	50586421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_50588340_50590155_50590227_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
10107	chr11	+	4325	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107213.8	4339	23	9	5	0	-5	multi-exon	FALSE	canonical	3	94	junction_16	37.5030852725303	293	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCAAGCTGTTTATTG	987	False	NA	NA	False	NA	NA	NA	101443692	101472772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
10108	chrX	-	3251	11	Antisense	novelGene_ENSMUSG00000083906.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGCCGGGACCCGGAACC	NA	False	NA	NA	False	NA	NA	NA	158376054	158315677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158315831_158331233_158331308_158334742_158335369_158336237_158336886_158338465_158338645_158340436_158340552_158341328_158341393_158342831_158342958_158350903_158351009_158357938_158358112_158375066
10110	chr10	+	3554	28	FSM	ENSMUSG00000040675.18	ENSMUST00000043735.8	3535	28	-21	2	5	-2	multi-exon	FALSE	canonical	3	127	junction_27	66.4418431300526	32	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGTTCAGCTAGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	3923122	4106109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
10111	chr7	-	3094	25	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-5019	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	375.448562740476	1	71	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTACTGGCTGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	44192861	44182177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187835_44188343_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191669_44192173_44192303_44192664
10112	chr9	-	2455	4	NIC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-8	0	intron_retention	FALSE	canonical	3	4243	junction_2	179.478875265772	9	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775151	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110769888_110771396_110772322_110773258_110773312_110774891
10113	chr4	+	2289	13	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	-13	-383	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	455.388539845067	7	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAAAAGGCTTTCTGCA	842	False	NA	NA	False	NA	NA	NA	129083681	129113017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109126_129109213_129110470_129110613_129112223
10114	chr13	-	4497	3	NNC	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-11581	1744	intron_retention	FALSE	canonical	3	63	junction_2	69.5	32	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACACCCACCCCACACCCA	4388	False	NA	NA	False	NA	NA	NA	66900958	66884690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66889043_66889243_66889330_66900899
10115	chr1	-	4123	6	ISM	ENSMUSG00000026558.14	ENSMUST00000027839.14	803	7	5567	-3443	-756	-6	3prime_fragment	FALSE	canonical	3	994	junction_5	14.9264865256362	678	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCACTCCTTTGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	167065160	167050457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057
10116	chr6	-	3590	19	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	2	5	intron_retention	FALSE	canonical	3	759	junction_15	55.7249916227721	2	68	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACGGGGGCTGACTGGTT	7907	False	NA	NA	False	NA	NA	NA	124806396	124791995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
10117	chr1	+	2341	15	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	intron_retention	FALSE	canonical	3	306	junction_3	446.071199816938	3210	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724138	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
10118	chr2	+	3156	3	NIC	ENSMUSG00000078906.10	novel	919	4	NA	NA	3018	1859	combination_of_known_splicesites	FALSE	canonical	3	113	junction_1	201	8	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCTGTTACAGCTA	NA	False	NA	NA	False	NA	NA	NA	174855129	174862900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174855276_174858749_174858811_174859951
10119	chr2	-	2944	23	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	79.1293010268114	12	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTGCCTGCAGTGCCTA	NA	False	NA	NA	False	NA	NA	NA	103591545	103551603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563297_103574705_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
10120	chr11	-	3555	11	NNC	ENSMUSG00000020863.16	novel	3478	10	NA	NA	28	-11	intron_retention	FALSE	canonical	3	14	junction_5	100.65689246147	289	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTTGCAGAGTTGATT	NA	False	NA	NA	False	NA	NA	NA	94212756	94181975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94189775_94189922_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
10121	chr14	+	4488	3	FSM	ENSMUSG00000022010.20	ENSMUST00000048371.15	4818	3	331	-1	-196	0	multi-exon	FALSE	canonical	3	82	junction_1	1126.5	13	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	7695	False	NA	NA	False	NA	NA	NA	76653357	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76656450_76742688_76742738_76743856
10122	chr2	+	2853	15	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	544.677680385569	19	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGAGTGGATGCCCCTAG	653	False	NA	NA	False	NA	NA	NA	26279359	26287130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286016_26286172_26286478_26286589
10123	chr7	+	3682	21	ISM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	4	4008	4	-1	intron_retention	FALSE	canonical	3	158	junction_8	9.85126895379473	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAGAAGAAGAGAAGGA	503	False	NA	NA	False	NA	NA	NA	110628161	110651576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656
10124	chrX	-	3584	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	63	0	5	0	multi-exon	FALSE	canonical	3	1008	junction_2	64.9970120101527	2	132	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	93256252	93232312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
10125	chr5	-	3180	2	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-6	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	84	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGTCGGCGGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	135963459	135937267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135940275_135963286
10126	chr13	-	3301	5	FSM	ENSMUSG00000021302.11	ENSMUST00000223174.2	870	5	-40	-2391	0	183	multi-exon	FALSE	canonical	3	14	junction_4	114.48007468551	846	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTGTATTGCCATAATG	NA	False	NA	NA	False	NA	NA	NA	14237998	14226246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234039_14237790
10127	chr11	-	5414	16	Antisense	novelGene_ENSMUSG00000059474.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	82	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAACTCCCACATGGGG	NA	False	NA	NA	False	NA	NA	NA	93837805	93776679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_93776944_93795980_93796184_93799628_93799769_93801107_93801230_93803198_93803283_93812190_93812309_93813969_93814107_93814616_93814702_93815247_93815484_93816490_93816552_93817049_93817149_93820435_93820592_93822643_93822720_93823043_93823281_93824706_93824785_93834487
10128	chr15	+	1646	10	ISM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	14	7299	14	4613	5prime_fragment	FALSE	canonical	3	1651	junction_4	119.303534454489	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTAGAACTTGTTCTATA	NA	False	NA	NA	False	NA	NA	NA	78959392	78971306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633
10129	chr15	+	1417	3	ISM	ENSMUSG00000033047.6	ENSMUST00000230032.2	2345	6	5775	7	5775	-7	3prime_fragment	FALSE	canonical	3	1905	junction_1	38.5	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGTTTGTGGTCTCA	5525	False	NA	NA	False	NA	NA	NA	78973023	78978598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78974162_78977536_78977618_78978400
10130	chr5	-	3157	10	NNC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	2	-1269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	89.8547524798209	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAAATGCTATTGTAAGG	NA	False	NA	NA	False	NA	NA	NA	74229079	74160655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74189891_74190008_74190032_74192964_74193179_74197693_74197775_74228910
10131	chr9	-	3820	6	FSM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	873	8	418	-8	multi-exon	FALSE	canonical	3	447	junction_5	30.9644957976067	626	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAGATCCTGCCTTATT	4112	False	NA	NA	False	NA	NA	NA	99318561	99267480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318362
10132	chr1	-	2600	13	NIC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-13	7	intron_retention	FALSE	canonical	3	5685	junction_12	712.503489270209	10	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAATACTTCCTAGAGGTT	NA	False	NA	NA	False	NA	NA	NA	86287099	86278209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
10133	chr8	+	3603	21	NNC	ENSMUSG00000018796.14	novel	3897	21	NA	NA	-1	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_20	121.60652737415	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGGAGAATGTCTTTC	2223	False	NA	NA	False	NA	NA	NA	46924090	46989079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46924268_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376_46988390_46988430
10134	chr5	-	3697	4	NNC	ENSMUSG00000063406.12	novel	3800	4	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	114.453289841557	4	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCTATCATAATTGTTA	NA	False	NA	NA	False	NA	NA	NA	108280430	108269500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108272626_108273766_108273951_108277883_108277931_108280089
10135	chr7	-	3335	21	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-13	-3	intron_retention	FALSE	canonical	3	95	junction_6	22.7774010808959	79	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697699	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
10136	chr19	-	1979	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1087.72606845658	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902333	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883439_15884312_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
10137	chr3	+	3994	8	NNC	ENSMUSG00000004127.13	novel	4025	8	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	65.2811814618978	444	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTCAGCTAATGTTAAT	NA	False	NA	NA	False	NA	NA	NA	137849234	137865582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137849353_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
10138	chr16	-	2654	14	ISM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	492	549	323	113	3prime_fragment	FALSE	canonical	3	4287	junction_9	391.766021222637	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292269	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224
10140	chr6	-	3926	9	NIC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1547	junction_6	259.525257682176	3	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGTTTGCCTTTTATT	8956	False	NA	NA	False	NA	NA	NA	47790298	47773076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_47773838_47775298_47775533_47776119_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
10141	chr6	-	2256	11	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	584.627069164609	4	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8957	False	NA	NA	False	NA	NA	NA	47790297	47773074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780739_47780814_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
10142	chr17	-	5344	2	NNC	ENSMUSG00000059409.10	novel	485	2	NA	NA	-812	785	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	114	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGGATTAAAGGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	46998657	46993131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46993418_46993599
10143	chr2	-	3931	8	Antisense	novelGene_ENSMUSG00000026662.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCACCGGGCGCGCTGGG	NA	False	NA	NA	False	NA	NA	NA	4914324	4886617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_4886670_4889138_4889416_4896396_4896506_4897994_4898151_4901499_4901591_4904274_4904372_4910279_4910493_4911388
10144	chrX	+	2417	16	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	703.927351049492	1	31	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-20	True	NA	NA	NA	74139704	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301_74152986_74153127
10145	chr7	-	3385	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	64	0	-34	0	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	828	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9570	False	NA	NA	False	NA	NA	NA	3218965	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
10146	chr10	-	3809	12	NIC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-24	2	intron_retention	FALSE	canonical	3	345	junction_11	33.8721465816619	5	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCAGGTGTCCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	81332200	81322288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324301_81324382_81324471_81325635_81325955_81326060_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
10147	chr9	+	3531	20	NNC	ENSMUSG00000032178.15	novel	3684	19	NA	NA	4	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	560.214887540135	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAAGTAATGAGCCCTCC	NA	False	NA	NA	False	NA	NA	NA	21279170	21313080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747_21312240_21312462
10148	chr12	+	2557	19	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	-34	51	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	259.762124088773	944	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACTGATGTGTCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	21336324	21364887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21336546_21338735_21338930_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
10149	chr15	-	2575	14	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	8	-10	intron_retention	FALSE	canonical	3	1461	junction_8	118.124144904704	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTCTTCCTTCGTCCTG	2753	False	NA	NA	False	NA	NA	NA	77855005	77843207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
10150	chr11	+	4188	23	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	-111	-1202	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_14	142.639702434995	1	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGCCTCTGCAGTTTAT	2033	False	NA	NA	False	NA	NA	NA	87018019	87110307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075711_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87097589_87097780_87100594_87100714_87107262_87107374_87109077
10151	chr15	-	3002	18	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	197.839524637143	831	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	99549504	99518377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541302_99541405_99549387
10154	chr4	+	4167	13	NNC	ENSMUSG00000028233.7	novel	544	4	NA	NA	3864	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57.0411036008246	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATCTCAAATTTTGTTTT	3825	False	NA	NA	False	NA	NA	NA	3578813	3616613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_3578915_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
10155	chr16	+	2635	1	FSM	ENSMUSG00000092029.2	ENSMUST00000165914.2	661	1	-166	-1808	-166	1808	mono-exon	FALSE	NA	NA	NA	NA	NA	3	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAAAAAGATAA	NA	False	NA	NA	False	NA	NA	NA	61197452	61200087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_61197500_61200100
10158	chr15	+	5191	23	FSM	ENSMUSG00000015002.19	ENSMUST00000015146.16	5215	23	22	2	14	-2	multi-exon	FALSE	canonical	3	451	junction_16	48.5493912261498	304	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGTGCATTTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	65658910	65745663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
10160	chr2	+	5156	22	FSM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	9	9	9	-4	multi-exon	TRUE	canonical	3	171	junction_5	24.2975694686972	222	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTTGGCATGATTTGTT	1687	False	NA	NA	False	NA	NA	NA	5956288	6061505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051708_6051877_6055148_6055291_6056319_6056441_6060243
10161	chrX	-	5247	12	FSM	ENSMUSG00000033906.6	ENSMUST00000042070.6	5509	12	261	1	261	-1	multi-exon	TRUE	canonical	3	93	junction_8	6.78841989185253	121	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTGTGTCTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	103714409	103580575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_103584775_103588433_103588511_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
10163	chr18	+	3026	10	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	96.6517229828602	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTGAAGTAGACACGGTG	977	False	NA	NA	False	NA	NA	NA	38429738	38450894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38429852_38430518_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
10164	chr1	+	2725	23	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	231.96966530095	24	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3050	False	NA	NA	False	NA	NA	NA	171910381	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171949614
10165	chr10	+	2613	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-5	-5	intron_retention	FALSE	non_canonical	0	0	junction_13	583.969496163096	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTCTGTCTTCCCTGAG	1603	False	NA	NA	False	NA	NA	NA	79690480	79700188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699389_79699448_79699506_79699566
10166	chr5	-	2957	9	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	216	-1	intron_retention	FALSE	canonical	3	1920	junction_6	156.533542731263	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCTTGTTAATAACTC	4711	False	NA	NA	False	NA	NA	NA	138167689	138162862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138167210_138167359
10167	chr15	-	3592	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	0	364	0	-364	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	1134	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	51855143	51825999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
10168	chr19	+	3264	25	NNC	ENSMUSG00000024974.11	novel	4851	29	NA	NA	6	338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	224.884935856095	6	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGAAAGTGTTGCTTTCA	NA	False	NA	NA	False	NA	NA	NA	53588834	53633577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629277_53633177
10170	chr11	+	2320	11	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	15914	-4328	at_least_one_novel_splicesite	FALSE	canonical	3	186	junction_2	2152.66245612265	7	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTATGTGGGGGAACTG	NA	False	NA	NA	False	NA	NA	NA	55376457	55391336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55376565_55378304_55378455_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
10171	chr11	-	3589	21	NNC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	95.8515910144427	28	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	NA	NA	NA	103844850	103712607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804203_103804695_103804745_103807402_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
10172	chr5	+	3658	19	NIC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	54	junction_6	224.162701328001	1	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGCTTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	139186391	139235587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
10175	chr2	+	2550	15	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	259	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	569.81085297076	6	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84868135	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84868314_84868696_84868927_84870575_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876102_84876648_84876784_84876989
10178	chr11	-	3549	14	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	-10796	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_13	1104.98749357029	1	131	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	9439	False	NA	NA	False	NA	NA	NA	50202613	50185293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202481
10179	chr19	-	2373	19	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	359.223721514553	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5038	False	NA	NA	False	NA	NA	NA	53027093	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53013689_53013815_53026944
10180	chr18	+	3689	14	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	-85	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	336.98311723553	3	132	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAACTTAG	1678	False	NA	NA	False	NA	NA	NA	35704894	35724461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714983_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
10181	chr6	-	2526	12	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43548	-227	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCTACAGCCGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	71852242	71808295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71828862_71833892_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849908_71851300
10183	chr14	-	2864	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	-13	0	-13	0	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	1127	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3431	False	NA	NA	False	NA	NA	NA	65830537	65767897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
10184	chr9	+	2873	6	NNC	ENSMUSG00000032092.6	novel	3107	6	NA	NA	-104	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	206.778528866031	70	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATGATTTTTATTATT	NA	False	NA	NA	False	NA	NA	NA	44953889	44965310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44954093_44954997_44955165_44955450_44955598_44958461_44958610_44960949_44961023_44963175
10185	chr14	-	3245	24	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	193	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	326.129324783792	9	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGTTTTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	52434680	52397896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52398345_52401948_52402009_52408283_52408454_52408878_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
10187	chr19	-	2932	9	NNC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	0	-1851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	135.621658945022	773	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGATTTTTGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	43741439	43723543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43725292_43726475_43726586_43728286_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
10190	chr12	-	4343	6	NNC	ENSMUSG00000020964.15	novel	4287	20	NA	NA	26	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	152.845542951046	83	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGGCGTGTGCCACAT	NA	False	NA	NA	False	NA	NA	NA	91815877	91772814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_91776484_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
10191	chr5	+	3076	14	ISM	ENSMUSG00000040584.9	ENSMUST00000047753.5	4997	28	53109	57	-6633	-52	3prime_fragment	FALSE	canonical	3	48	junction_7	59.5291187263121	18	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	NA	NA	NA	8763185	8798518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
10192	chr2	-	3933	12	NNC	ENSMUSG00000027104.19	novel	3943	12	NA	NA	400	-1	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_11	108.75432925742	1	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTTATAATTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	73722474	73646864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722307
10193	chr8	+	2653	22	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	256.853514461369	107	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTCTTTTTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	94941209	95041485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038193_95038290_95041212
10194	chr15	-	5997	10	ISM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	39973	-4777	18999	-32	3prime_fragment	FALSE	canonical	3	120	junction_5	25.9591321736663	196	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCACTGTTTTTAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	76997981	76963222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804
10196	chr7	-	3381	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	-38	3	-38	-3	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	811	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTGTATCTGTGGGATT	NA	False	NA	NA	False	NA	NA	NA	113853984	113814796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
10197	chr10	+	4790	10	Antisense	novelGene_ENSMUSG00000039531.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGAGAGGGTAGAGATCC	2628	False	NA	NA	False	NA	NA	NA	33800507	33827209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_33803616_33804005_33804158_33805814_33805978_33806146_33806340_33811083_33811254_33816153_33816275_33819644_33819759_33824926_33825494_33825742_33825860_33827124
10198	chrX	-	2872	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	-30	6	-30	-6	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	2	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTACAGTTCTTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	158921439	158905210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
10199	chr15	-	2603	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	296	-614	296	-185	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	2	105	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACACCCTACCGAGTA	3	True	NA	NA	False	NA	NA	NA	36794479	36771198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
10200	chr8	+	1796	1	FSM	ENSMUSG00000043192.5	ENSMUST00000051687.5	1432	1	-75	-289	-75	289	mono-exon	FALSE	NA	NA	NA	NA	NA	6	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAATTCAAGAA	NA	False	NA	NA	False	NA	NA	NA	5689504	5691300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_5689500_5691300
10201	chr3	+	5343	9	ISM	ENSMUSG00000001419.18	ENSMUST00000001455.13	5401	11	13320	28	-7268	-28	intron_retention	FALSE	canonical	3	119	junction_8	15.5839460663851	190	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAAAAAAACATGT	7510	False	NA	NA	False	NA	NA	NA	88062998	88079365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821_88075042_88075344
10203	chr7	+	1647	1	ISM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	7151	9	4591	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGATAACAGGAAGACTC	7381	False	NA	NA	False	NA	NA	NA	3346209	3347856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3346200_3347900
10205	chr4	+	3911	16	NIC	ENSMUSG00000028614.15	novel	4584	18	NA	NA	-5	9	combination_of_known_splicesites	FALSE	canonical	2	7	junction_10	156.944519567337	5	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGTTCATCAAACACTGA	NA	False	NA	NA	False	NA	NA	NA	107225243	107273529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
10206	chr9	+	3493	15	NIC	ENSMUSG00000006932.18	novel	2222	14	NA	NA	35	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	170.049332577944	1159	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	120762918	120789573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_120763028_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
10207	chr17	+	3079	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	239.515763615692	8	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATCTTCGGATTGG	NA	False	NA	NA	False	NA	NA	NA	32255420	32281823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32275513_32276231_32277497_32277639_32278247_32278312_32279321_32279436_32280776
10208	chr16	+	2572	10	NIC	ENSMUSG00000022841.16	novel	2937	12	NA	NA	28	-151	intron_retention	FALSE	canonical	3	317	junction_4	780.606237974968	39	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGCTGGCTAAATGTTA	1452	False	NA	NA	False	NA	NA	NA	20354326	20362655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359564_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361501_20362060
10209	SIRV7	-	2300	6	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1828.91786584308	2	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTGTTAATATGAATC	NA	False	NA	NA	False	NA	NA	NA	147925	1003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1125_1326_2676_2993_3112_3809_3897_114680_114989_147608
10210	chrX	-	3055	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3362	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227930	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085855_23086016_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
10211	chrX	+	1790	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	24	11	24	-11	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAATGGAAGTTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	105230729	105247294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
10213	chr1	-	2317	16	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	156	-11	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_15	501.503588111679	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACAGCTGATGATAGTGT	NA	False	NA	NA	False	NA	NA	NA	128344940	128291454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344579
10214	chr15	-	2870	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-42	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	711.346005041772	2	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283837	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249483_81249552_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
10215	chr2	+	3075	18	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-68	-15	intron_retention	FALSE	canonical	0	0	junction_16	169.22332248237	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTGGGCAAAGTGTTC	565	False	NA	NA	False	NA	NA	NA	31462734	31507515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31505535_31505638_31506190
10216	chr3	+	2813	6	Antisense	novelGene_ENSMUSG00000033222.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGGACATGGACGGTGC	NA	False	NA	NA	False	NA	NA	NA	100846180	100855511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_100847427_100849140_100849221_100850975_100852182_100853207_100853264_100854710_100854884_100855459
10217	chr11	-	3386	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9015	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	562.625049873859	1	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	409	False	NA	NA	False	NA	NA	NA	106615235	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573795_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606191_106615168
10218	chr4	-	3080	9	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-33	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	527.600405136311	3	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTGTCTTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	141325568	141303374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323225_141325410
10219	chr9	-	6236	9	FSM	ENSMUSG00000060510.15	ENSMUST00000174462.8	6283	9	42	5	33	-5	multi-exon	FALSE	canonical	3	20	junction_8	12.7156399760295	45	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTGTGTTAATGTTGT	NA	False	NA	NA	False	NA	NA	NA	20432671	20406368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
10220	chr5	+	2519	17	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	372.261705448935	9	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815928	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33817243_33817383_33817498_33817691_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
10221	chr11	-	2975	7	NNC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.650707657592	10	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	40646097	40639378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40640378_40640873_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
10222	chr10	+	2798	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	6	2	intron_retention	FALSE	non_canonical	0	0	junction_4	462.187031482933	2	85	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1567	False	NA	NA	False	NA	NA	NA	79690444	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695070_79695206_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
10223	chr7	+	3451	18	Antisense	novelGene_ENSMUSG00000085228.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	941	21	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCTCACTTCCGGTTCCG	9617	False	NA	NA	False	NA	NA	NA	143989040	144024475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_143990843_143991688_143991760_143992504_143992668_143993744_143993835_143995434_143995585_143999539_143999610_144003296_144003351_144004712_144004824_144005759_144005873_144006280_144006396_144008412_144008524_144010177_144010235_144011407_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019783_144024423
10224	chr6	+	700	3	FSM	ENSMUSG00000042079.14	ENSMUST00000177570.2	1104	3	-9	413	0	74	multi-exon	FALSE	canonical	3	4878	junction_1	99	4	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGAAGCACAGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	117894254	117901002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
10225	chr17	+	2839	6	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	18	3	intron_retention	FALSE	canonical	3	546	junction_4	78.4693570765047	784	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTCTTTCCTTTACTT	5640	False	NA	NA	False	NA	NA	NA	34128489	34134559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131782_34132246_34133037_34134316
10226	chr2	+	4979	19	FSM	ENSMUSG00000040506.17	ENSMUST00000099712.10	5021	19	38	4	-10	-3	multi-exon	FALSE	canonical	3	41	junction_7	21.1640418320005	127	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCAGGCTCCTGCTTAT	NA	False	NA	NA	False	NA	NA	NA	91560516	91749190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91602783_91603055_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
10227	chr2	+	4415	21	NNC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-1404	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	97.6460956720749	2	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTGCCCTGCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	18127115	18217201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_18127160_18128529_18128624_18130944_18131041_18142706_18142780_18144078_18144148_18151587_18151684_18164266_18164523_18167127_18167492_18167538_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
10228	chr6	+	2804	9	ISM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	537	91	-1	-91	intron_retention	FALSE	canonical	3	5555	junction_1	310.516907752219	4	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTGGTGTGTTTTTCAT	5147	False	NA	NA	False	NA	NA	NA	85429032	85445366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605
10230	chr1	-	2373	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2620.52024736767	3	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTGCCAGACTTAATAC	NA	False	NA	NA	False	NA	NA	NA	86287091	86278221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278415_86278533_86278758_86279088_86279203_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
10231	chr8	-	2012	1	FSM	ENSMUSG00000081378.2	ENSMUST00000117927.2	456	1	-826	-730	-826	730	mono-exon	FALSE	NA	NA	NA	NA	NA	6	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCAGATTTCCAGGAGGT	2835	False	NA	NA	False	NA	NA	NA	120330190	120328178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_120328200_120330200
10232	chr19	+	2272	2	Genic_Genomic	ENSMUSG00000118353.2	novel	780	1	NA	NA	-97	1746	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2276	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAGATCTTGAAA	NA	False	NA	NA	False	NA	NA	NA	22418401	22421024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_22419830_22420180
10233	chr10	-	2682	11	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	77	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCGGCGGACAAGGTT	NA	False	NA	NA	False	NA	NA	NA	128198197	128173695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173827_128185619_128185672_128186300_128186409_128187066_128187132_128188540_128188673_128188889_128189079_128194200_128194401_128195036_128195167_128195300_128195403_128195810_128196021_128196834
10234	chr12	+	3159	8	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	-3	-136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	190.122302205497	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAATTAGTACTTGTATT	NA	False	NA	NA	False	NA	NA	NA	59113704	59120648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59118227
10236	chr7	-	3589	9	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	348	junction_6	51.2756033606627	3	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCTGACTGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	125976595	125969241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125971320_125971583_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
10237	chr14	+	3399	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	112.882990747056	2	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56640141	56726892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56669053_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
10238	chr7	+	2431	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	766	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	285	False	NA	NA	False	NA	NA	NA	44465721	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478054_44478132
10239	chr1	-	2997	15	ISM	ENSMUSG00000026193.16	ENSMUST00000188894.7	8043	45	48169	2	-2159	1	3prime_fragment	FALSE	canonical	3	2104	junction_10	255.454427023127	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGACGTCATTTCTT	9057	False	NA	NA	False	NA	NA	NA	71644162	71624680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128
10240	chr11	-	3740	16	NNC	ENSMUSG00000005198.16	novel	6740	29	NA	NA	-227	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	99.7114949352492	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	NA	False	NA	NA	NA	69633624	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69626167_69626292_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512
10241	chr9	+	2926	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	170	11	-101	-11	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	760	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATAAAGAACTATGATTT	NA	False	NA	NA	False	NA	NA	NA	44953892	44965302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
10242	chr17	+	6814	2	FSM	ENSMUSG00000097119.3	ENSMUST00000233673.2	2578	2	0	-4236	0	-11	multi-exon	FALSE	canonical	3	41	junction_1	0	129	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGACCACATTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	45744790	45753459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_45745154_45747008
10243	chr7	+	4084	28	NIC	ENSMUSG00000034867.17	novel	4284	29	NA	NA	55	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	54.9143990302223	1	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCGTGCCATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	35285756	35338650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_35285795_35291176_35291308_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
10245	chrX	+	2272	1	FSM	ENSMUSG00000119320.1	ENSMUST00000082806.3	137	1	-1627	-508	-1627	508	mono-exon	FALSE	NA	NA	NA	NA	NA	250	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTTATGTTTTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	73314462	73316734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73314500_73316700
10248	chr1	+	2777	24	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	228.444803739082	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3039	False	NA	NA	False	NA	NA	NA	171910370	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942640_171949623
10249	chr12	+	2033	16	Antisense	novelGene_ENSMUSG00000021240.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	13	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCCGTGAGGTCCTTCC	6776	False	NA	NA	False	NA	NA	NA	84649306	84660749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_84649934_84650067_84650184_84650722_84650804_84651109_84651162_84651757_84651803_84652116_84652157_84652643_84652737_84652872_84653083_84655343_84655433_84655578_84655672_84655748_84655873_84656153_84656248_84658494_84658544_84659096_84659222_84659546_84659670_84660677
10250	chr7	-	3794	7	FSM	ENSMUSG00000025139.15	ENSMUST00000130439.3	1892	7	-96	-1806	11	0	multi-exon	FALSE	canonical	3	12	junction_6	128.120602905578	355	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTGTTCTTGAGTAT	2780	False	NA	NA	False	NA	NA	NA	141456141	141435319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141452431_141452521_141456012
10251	chr13	-	3363	4	FSM	ENSMUSG00000113473.2_ENSMUSG00000074863.6	ENSMUST00000221999.2	615	4	-27	-2721	0	-589	multi-exon	FALSE	canonical	3	52	junction_3	44.0176732183285	286	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTACCTTGCTAGAACAT	NA	False	NA	NA	False	NA	NA	NA	62832759	62818701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_62821755_62823062_62823124_62823332_62823469_62832646
10253	chr15	-	2221	13	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	-64	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1701.4636264764	24	77	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	3820	False	NA	NA	False	NA	NA	NA	36605774	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598841_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685
10254	chr4	+	3574	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43233	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	126.671162200926	1	154	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533640	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147578832_147578938_147592042_147592098_147595209_147595337_147596801_147597132_147597802
10255	chrX	+	2695	19	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	31	-732	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	199.710778531677	4	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAAAGGAGCCTAATCT	NA	False	NA	NA	False	NA	NA	NA	150799454	150844958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806076_150816721_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
10256	chr17	+	4718	5	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-52	-64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1504.24499334384	4	167	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGTCTGAAGACAGCTAC	NA	False	NA	NA	False	NA	NA	NA	13226830	13238957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13232319_13232500_13233912_13234920_13235754
10257	chr8	+	4002	14	NNC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	28	-2	intron_retention	FALSE	canonical	3	4	junction_10	179.363668126483	1	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85415945	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85416006_85416336_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424933_85425021_85425099_85425767_85425888_85425969_85426100_85426231
10259	chr15	-	2550	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	267	0	267	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	4	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	644	False	NA	NA	False	NA	NA	NA	36608950	36595904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
10261	chr3	-	2962	25	NNC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	0	-3037	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_15	345.015757993586	1	55	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAACCAGACGCAGACTCA	3547	False	NA	NA	False	NA	NA	NA	89959782	89916563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935403_89935498_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
10263	chr10	-	1291	8	Antisense	novelGene_ENSMUSG00000020156.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAACTGTACTCCGAC	3617	False	NA	NA	False	NA	NA	NA	80076910	80068344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_80068880_80070054_80070161_80071943_80072014_80074146_80074225_80074692_80074754_80075752_80075828_80076223_80076277_80076597
10264	chr2	-	5147	4	NIC	ENSMUSG00000026788.14	novel	1828	4	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	1.4142135623731	145	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTGTTTTCACTCAT	NA	False	NA	NA	False	NA	NA	NA	33358538	33340298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_33345136_33352277_33352370_33354925_33355050_33358444
10265	chr7	-	4138	13	FSM	ENSMUSG00000030846.16	ENSMUST00000106228.8	2835	13	323	-1626	-4	0	multi-exon	FALSE	canonical	3	12	junction_12	81.5772895275803	460	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTTTCTCTTAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	128063074	128041500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128060320_128060381_128062848
10266	chr6	-	3278	8	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	-75	-3	intron_retention	FALSE	non_canonical	0	0	junction_6	289.692870439839	1	85	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAACTGTGTCTATTAC	NA	False	NA	NA	False	NA	NA	NA	72416446	72409785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414089_72414353_72414432_72416328
10269	chr8	+	2565	12	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	385.064897396025	142	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	3016	False	NA	NA	False	NA	NA	NA	13389663	13428448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13407042_13407110_13412268_13412378_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
10270	chr2	+	2831	16	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	17	0	intron_retention	FALSE	non_canonical	0	0	junction_13	414.499934325152	1	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867815	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875790_84876027_84876117_84876596_84876784_84876989
10272	chr4	-	3485	9	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	177.349892514769	430	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAATGAAGTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	126954919	126941381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126947768_126947923_126948000_126948176_126952585_126952825_126953302_126953453_126954788
10273	chr15	-	2489	9	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	2290	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	846.97254973228	2	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81276514	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250604_81259041_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465
10274	chr4	-	3048	15	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	5	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	451.83862479556	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGTTCTGGAATTATA	NA	False	NA	NA	False	NA	NA	NA	116484685	116458245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461090_116461245_116461378_116461549_116461937_116462012_116462105_116462200_116462895_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
10275	chr9	+	2399	13	NNC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	484.465255032116	109	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	25163807	25219862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163996_25176689_25176793_25188890_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
10276	chr7	+	4264	29	FSM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	19	1	8	-1	multi-exon	FALSE	canonical	3	207	junction_17	26.9819242214835	274	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCGTGCCATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	35285687	35338650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
10278	chr1	-	2818	24	Genic_Genomic	ENSMUSG00000103380.2	novel	942	2	NA	NA	-29646	7099	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCTCCTCGGACAAGGA	NA	False	NA	NA	False	NA	NA	NA	171949892	171910377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_171910515_171915116_171915232_171916662_171916736_171918503_171918587_171918730_171918805_171919808_171919921_171925239_171925349_171927232_171927334_171928944_171929081_171929775_171929858_171931673_171931825_171932750_171932820_171933683_171933759_171935877_171935962_171937352_171937492_171938054_171938140_171938241_171938379_171939427_171939599_171939694_171939836_171940590_171940782_171940899_171940997_171942311_171942403_171944511_171944592_171949607
10279	chr13	-	2970	7	NNC	ENSMUSG00000021302.11	novel	652	5	NA	NA	133	198	intron_retention	FALSE	non_canonical	0	0	junction_1	115.482201610849	158	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGTTTTTTTCTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	14237825	14226231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_14228201_14228422_14229041_14229734_14229806_14232380_14232474_14233903_14234043_14235547_14235593_14237790
10280	chr12	+	2443	8	NNC	ENSMUSG00000021134.18	novel	3482	4	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	846.732350550862	2	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80993097	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80993227_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995943_80996267_80996379_80996493
10281	chr1	+	2406	9	NNC	ENSMUSG00000025903.15	novel	4456	2	NA	NA	-164	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	268.615896774558	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4877846	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4877910_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
10283	chr17	+	3558	22	NNC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	99.897997864443	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCTCTGTGCTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	29879605	29922335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898048_29901086_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
10284	SIRV7	+	2070	4	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	238	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCAATCTATTGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	1001	114907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_2679_2996_3111_43027_43083_114683
10285	chr4	+	3603	30	NNC	ENSMUSG00000053510.13	novel	4311	31	NA	NA	23	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	135.539631387191	111	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACGTGTATTTAAAGACG	9963	False	NA	NA	False	NA	NA	NA	108857874	108918349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915836_108916948_108917060_108917265_108917383_108917965_108918056_108918132
10286	chr10	-	5774	25	FSM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	-26	3	-26	-3	multi-exon	FALSE	canonical	3	61	junction_24	17.9698339045066	166	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGACTTTGATGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	12424649	12257936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12423690
10289	chr10	-	3577	9	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	11	497	-11	113	intron_retention	FALSE	canonical	3	1924	junction_2	86.9107839971542	2	95	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGCTGAGATTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	127358244	127353488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839
10290	chrX	-	2759	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3359	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	5	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227933	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085993_23086453_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
10291	chr9	+	2320	12	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	1280	junction_11	427.754351379348	7	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1178	False	NA	NA	False	NA	NA	NA	108437667	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
10292	chr13	-	2996	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	56	6281	-4	-6281	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	2535	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGTAAATACTTGGATG	5902	False	NA	NA	False	NA	NA	NA	38178137	38161657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
10293	chrUn_JH584304v1	-	3043	6	Intergenic	novelGene_4671	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_4	134.863783129497	1	76	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACTACCATAGCT	NA	False	NA	NA	False	NA	NA	NA	59657	52677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
10294	chr19	-	2757	10	NNC	ENSMUSG00000013662.7	novel	3771	10	NA	NA	0	267	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	136.12584954218	387	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTGAATTTTTATGGT	NA	False	NA	NA	False	NA	NA	NA	32689720	32649954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675925_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
10295	chrX	-	541	1	NIC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	7	-3715	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTCATGTGTAGGGAGA	NA	False	NA	NA	False	NA	NA	NA	100129619	100129078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100129100_100129600
10296	chr11	-	3219	12	NNC	ENSMUSG00000069910.3	novel	2505	12	NA	NA	-8	3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_10	48.8899928917839	31	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTATTTTTTAATTCT	NA	False	NA	NA	False	NA	NA	NA	34724476	34700013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34720848_34721727_34724314
10297	chr16	-	3521	17	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	360.209005084201	2	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2539	False	NA	NA	False	NA	NA	NA	21981783	21877758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879318_21879427_21879636_21880609_21880724_21882331_21882458_21883838_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
10298	chr2	-	4602	8	Antisense	novelGene_ENSMUSG00000093242.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	149	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGCGGGGCCAGTCAC	NA	False	NA	NA	False	NA	NA	NA	75499751	75489610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_75489665_75491807_75491928_75492014_75492161_75492239_75492450_75492829_75492919_75493002_75493106_75493202_75493258_75495926
10299	chr11	-	3083	26	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	386.074633199334	1	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTTGGTTTGCTGC	8480	False	NA	NA	False	NA	NA	NA	102771779	102729302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742647_102750823_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
10301	chr15	+	5007	19	FSM	ENSMUSG00000022463.9	ENSMUST00000023100.8	5077	19	67	3	2	-3	multi-exon	FALSE	canonical	3	437	junction_18	78.7541886011292	455	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACACAAGGCTGTGTGAGT	2240	False	NA	NA	False	NA	NA	NA	82031448	82089577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
10302	chr9	+	3936	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	11	-517	-9	517	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	475	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATAAAACCGAGTTCATT	-2	True	NA	NA	False	NA	NA	NA	50768247	50793248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
10304	chr17	-	2525	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	-35	0	intron_retention	FALSE	non_canonical	0	0	junction_12	499.910221531663	1570	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5705	False	NA	NA	False	NA	NA	NA	33904428	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
10305	chr6	+	2544	13	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	1	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	561.833011964706	1	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAACTGAATAAAGCAACA	NA	False	NA	NA	False	NA	NA	NA	71808317	71852209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71851300
10306	chr7	-	3675	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_14	430.100718552264	2	84	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153784	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143129343_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
10308	chr9	-	3037	19	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	83.1682067696782	1	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	NA	False	NA	NA	NA	53159412	53009934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115454_53115603_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
10309	chr1	+	2330	22	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-2063	-429	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	263.365097541748	3	33	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTATCAAGCGCTGCCCT	5752	False	NA	NA	False	NA	NA	NA	171925239	171946487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931807_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940650_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407
10310	chr2	+	2691	7	NIC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	-2	-71	intron_retention	FALSE	canonical	3	3726	junction_1	2629.18369249638	8	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTAGTTCAGTTTT	7492	False	NA	NA	False	NA	NA	NA	75489621	75496112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_75489668_75491809_75491933_75492014_75492921_75493004_75494059_75495371_75495495_75495577_75495646_75495741
10312	chr18	-	3132	13	Antisense	novelGene_ENSMUSG00000025423.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGTGGAACCCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	77238837	77126250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77126674_77184940_77185418_77193498_77193584_77207605_77207657_77207749_77207843_77214552_77214686_77216649_77216758_77217745_77217820_77220786_77220946_77221627_77221764_77223475_77223646_77232696_77232837_77237754
10313	chr6	-	2556	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	71	-5	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_6	1567.90039108473	2	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGATAAACTCTGGATTT	8556	False	NA	NA	False	NA	NA	NA	145021839	144944888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144961502_144961579_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
10314	chr2	+	2670	17	FSM	ENSMUSG00000027642.16	ENSMUST00000127252.8	2314	17	-95	-261	-95	-2	multi-exon	FALSE	canonical	3	22	junction_1	580.610235953303	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCCATTTCTTCTGTGATA	NA	False	NA	NA	False	NA	NA	NA	157121250	157168237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157121444_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
10315	chr2	-	5209	12	FSM	ENSMUSG00000009207.16	ENSMUST00000134641.8	2120	12	-9	-3080	8	2038	multi-exon	FALSE	canonical	2	13	junction_8	78.2650719516906	241	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCAAGGCCTTACTGTT	NA	False	NA	NA	False	NA	NA	NA	74409284	74348596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74399284_74399473_74401278_74401321_74403881_74403971_74409162
10316	chr17	+	4123	25	NNC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_17	28.4428032295615	155	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCTTCCAGTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	25352367	25381070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375711_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
10317	chr5	-	3887	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	28	-3316	28	475	multi-exon	FALSE	canonical	3	125	junction_2	15.5	646	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	7685	False	NA	NA	False	NA	NA	NA	109899724	109883380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_109886877_109887064_109887192_109899460
10318	chr3	+	3054	7	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	44.1877308260512	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCTTTGTGAAAATGAT	NA	False	NA	NA	False	NA	NA	NA	58484105	58500556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115_58498304_58498359
10319	chr6	-	2472	11	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	-29	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1581.14518308725	2	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	NA	False	NA	NA	False	NA	NA	NA	144994567	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965018_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
10320	chr11	-	4881	13	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_8	140.611165986205	11	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGCATCTTTCAATACA	3552	False	NA	NA	False	NA	NA	NA	115494706	115475081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482400_115482521_115483257_115483357_115485531_115485608_115485734_115485820_115494653
10321	chr12	+	2008	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1935.17527837266	7	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762945_24762974_24763078
10323	chr11	+	2946	10	NIC	ENSMUSG00000059248.14	novel	778	7	NA	NA	-75	-1	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	199.641345083293	14	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTTTTCTGGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	117217183	117253138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_117217336_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
10325	chr13	+	4606	6	NNC	ENSMUSG00000021395.12	novel	4434	6	NA	NA	-441	-7	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	310.71375894865	329	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCAACTTGTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	51254474	51306575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_51254765_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
10326	chr19	-	3569	5	NIC	ENSMUSG00000024764.11	novel	1569	6	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	479	junction_4	24.1764348074732	46	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGCTGGGATGGCATCC	NA	False	NA	NA	False	NA	NA	NA	7218405	7203039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7205795_7207086_7207649_7211468_7211522_7212427_7212524_7218302
10328	chr11	+	2075	15	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	15	4474	-7	2731	5prime_fragment	FALSE	canonical	3	2354	junction_12	157.616445453991	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTGTGAGTTGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	72332195	72338120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974
10329	chr1	+	3179	6	ISM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	4540	4	4540	-4	3prime_fragment	FALSE	canonical	3	422	junction_4	47.1533667938992	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATTGTTTTGGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	180683231	180695674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
10330	chr17	-	3167	12	NNC	ENSMUSG00000025728.17	novel	3233	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	106.702180727016	644	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	26160909	26145400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26158105_26158219_26160788
10331	chr5	+	2241	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-120	-8	intron_retention	FALSE	canonical	3	16	junction_2	1380.81618375993	8	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACAATATATTCTCGCT	636	False	NA	NA	False	NA	NA	NA	77099503	77115344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77102287_77102405_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
10332	chr12	+	3330	4	NNC	ENSMUSG00000020561.9	novel	4325	4	NA	NA	9	-832	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	247.517002782974	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAATTCTCACAT	NA	False	NA	NA	False	NA	NA	NA	33479642	33490559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_33479752_33483501_33483646_33486934_33487144_33487691
10334	chr4	+	2320	8	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	454	2	NA	NA	-78	-9	multi-exon	TRUE	non_canonical	0	0	junction_3	115.9074225934	1	72	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147209634	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147316807_147316901_147536170_147536226_147595209_147595337_147596801_147596997_147597081_147597360_147668172_147668834_147668885
10335	chr11	-	4503	23	NIC	ENSMUSG00000004040.17	novel	4516	24	NA	NA	30	-406	intron_retention	FALSE	canonical	3	387	junction_2	54.5706191951204	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGAACTTATAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	100830275	100778041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100779587_100780303_100780417_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
10336	chr12	-	2682	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	26	123	-11	-119	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	1715	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTACCTCAGGGAAAGCCCC	NA	False	NA	NA	False	NA	NA	NA	108860074	108826078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
10337	chr4	+	4526	14	ISM	ENSMUSG00000028737.16	ENSMUST00000146309.8	4142	15	213	2	-2	-2	intron_retention	FALSE	canonical	3	190	junction_3	23.5665995719496	22	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTATATTTTGATCGTGT	NA	False	NA	NA	False	NA	NA	NA	139350417	139376996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
10338	chr4	-	3861	11	FSM	ENSMUSG00000028454.17	ENSMUST00000067481.6	3525	11	18	-354	18	354	multi-exon	FALSE	canonical	3	19	junction_4	53.2560794651653	124	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTTTTTT	11	True	NA	NA	False	NA	NA	NA	43025801	43017280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019782_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
10339	chr15	-	1754	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	71	28	7	-28	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	7	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTCTGGTAACTGCT	NA	False	NA	NA	False	NA	NA	NA	31601879	31590973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
10340	chr15	+	3243	10	NIC	ENSMUSG00000022351.15	novel	2758	11	NA	NA	-5	-7	intron_retention	FALSE	canonical	3	657	junction_1	55.5577777333351	514	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTTATGTTCTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	59186920	59203034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
10341	chr11	-	2447	10	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-6	intron_retention	FALSE	canonical	3	2002	junction_5	436.935229824431	135	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACTTGCTGTTTTCTT	9743	False	NA	NA	False	NA	NA	NA	106890290	106879460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106883518_106887334_106887473_106888063_106888162_106890184
10342	chr9	+	4250	27	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	0	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	176.012304572569	1	149	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATTCTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	44290842	44303638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285_44303250_44303347
10343	chr13	-	2945	14	NNC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	-1	82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	125.367153102091	7	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGCTATTGTGTGCGT	NA	False	NA	NA	False	NA	NA	NA	68730220	68709399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68710552_68712438_68712581_68712749_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68728669_68728835_68730183
10344	chr2	+	3506	20	NNC	ENSMUSG00000026790.20	novel	3082	21	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	352.730111921219	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCACTATGTCAGACTCCT	7232	False	NA	NA	False	NA	NA	NA	29779835	29821750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791225_29792230_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
10346	chr13	+	2853	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	341.21576509169	867	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCTTACTTGTCCGTG	NA	False	NA	NA	False	NA	NA	NA	54225887	54262365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247571_54247638_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
10347	chr2	-	3511	22	FSM	ENSMUSG00000017670.17	ENSMUST00000074046.13	3502	22	0	-9	0	9	multi-exon	FALSE	canonical	1	2	junction_12	97.9880829442692	267	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCCACACCTCTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	165168399	165131065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165145585_165145622_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
10348	chr10	-	3582	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-152	-10	intron_retention	FALSE	canonical	2	7	junction_24	265.472112863731	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATACACCAAGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	121462389	121425533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462335
10349	chr12	+	4096	19	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	17	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	177.269037703698	1	87	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGAGTCTTGTAAATAAA	4072	False	NA	NA	False	NA	NA	NA	83679116	83729865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714870_83715083_83715192_83715283_83718681_83718760_83719513_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
10350	chrX	-	3245	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-4612	-652	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_9	187.330559494195	4	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCCCATGTGGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59229061	59101970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59126519_59126598_59128218_59128342_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59228955
10351	chr6	+	3770	25	NNC	ENSMUSG00000029920.10	novel	5168	24	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	90.4143240863968	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTTGTTAATTATTGTA	1724	False	NA	NA	False	NA	NA	NA	65019589	65092582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_65019715_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284_65091772_65092478
10352	chr4	-	2924	15	Antisense	novelGene_ENSMUSG00000092862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.515078753637713	1	67	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGCCCCGCCACCGAGCG	NA	False	NA	NA	False	NA	NA	NA	41012608	40971014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40971063_40976356_40977341_40984890_40985049_40986689_40986770_40988620_40988726_40990789_40990828_40991747_40991883_40993757_40993859_40993962_40994179_40996812_40996925_41003010_41003097_41004326_41004437_41004825_41004943_41009186_41009268_41012055
10353	chr17	+	2077	13	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	373.784130734424	7	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165675	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21179683_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
10354	chr12	+	2604	23	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	307.175482191376	7	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7928	False	NA	NA	False	NA	NA	NA	76302088	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336289_76344320_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
10356	chr17	+	4060	25	FSM	ENSMUSG00000036636.11	ENSMUST00000040729.9	4071	25	3	8	3	-2	multi-exon	FALSE	canonical	3	111	junction_8	12.081896466293	156	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCTTCCAGTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	25352367	25381070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
10357	chr2	-	5603	7	NIC	ENSMUSG00000027650.13	novel	3830	8	NA	NA	38	-2	intron_retention	FALSE	canonical	3	176	junction_6	11.066716867356	15	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAATGTCTTGATGAGA	NA	False	NA	NA	False	NA	NA	NA	157870315	157823733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_157824381_157834887_157834976_157835273_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
10358	chr10	+	4063	10	NNC	ENSMUSG00000019920.19	novel	4327	10	NA	NA	177	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	88.6810069161053	220	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGTGTGTTACATATCAT	NA	False	NA	NA	False	NA	NA	NA	58159464	58260509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245432_58245886_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
10359	chr16	+	3495	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	9	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	336.728523836981	1	99	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTCCGTGACTACTGTG	NA	False	NA	NA	False	NA	NA	NA	13598585	13632693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606947_13607402_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631222_13631276
10360	chr4	-	2969	19	NIC	ENSMUSG00000028678.14	novel	2842	20	NA	NA	7	0	intron_retention	FALSE	canonical	3	415	junction_13	23.451618175762	1	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCAGATTCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	117039782	117016835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
10361	chr9	+	4330	21	NNC	ENSMUSG00000038535.18	novel	4990	23	NA	NA	-3507	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17.365123091991	9	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGATTCCTGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	72199062	72271053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72199209_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
10362	chr19	-	3897	3	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-8	-28	intron_retention	FALSE	canonical	3	1340	junction_1	13.5	4	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACAAGTGCTGTCCACT	6551	False	NA	NA	False	NA	NA	NA	4062681	4057530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057916_4058047_4061429_4062550
10363	chr12	+	3340	6	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	25	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	264.780210740909	3	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGCTGAGTCGTTCAT	NA	False	NA	NA	False	NA	NA	NA	86516915	86568391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561303_86566103
10364	chr13	-	2234	8	FSM	ENSMUSG00000041431.17	ENSMUST00000174038.2	1182	8	-108	-944	-24	-2	multi-exon	FALSE	canonical	1	11	junction_1	1234.39734944892	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCATTTGCCCTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	100923018	100915241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
10365	chrX	+	1409	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	-74	4	-74	-4	multi-exon	FALSE	canonical	3	755	junction_2	75.5	2564	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTAGTTTGGCCTCCTGTGT	1096	False	NA	NA	False	NA	NA	NA	7594603	7597299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7595002_7595954_7596173_7596506
10367	chr2	-	3956	18	NNC	ENSMUSG00000027620.17	novel	2127	18	NA	NA	0	-19	intron_retention	FALSE	canonical	0	0	junction_16	950.381536933428	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAATGTTAACAGGAAT	NA	False	NA	NA	False	NA	NA	NA	156022104	155989878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156018322_156018376_156019251_156021161_156021806
10369	chr2	-	3265	19	NNC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	-128	-4	intron_retention	FALSE	canonical	3	12	junction_18	887.944722517631	4	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCCACAAGAAAATTTTCG	NA	False	NA	NA	False	NA	NA	NA	156022286	155989172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019827_156020799_156020873_156021096_156021161_156021806_156021962_156022214
10370	chr2	+	2534	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-63	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	400.220544668811	5	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCCTTATGTCTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	84867514	84877455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876721_84877196
10371	chr16	+	2721	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	61	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTCCGTGACTACTGTG	NA	False	NA	NA	False	NA	NA	NA	13598608	13632693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631054_13631872
10372	chr5	+	2741	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	446	2775	67	-8	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	24	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACAACGTCTGAGTGAT	3141	False	NA	NA	False	NA	NA	NA	32616632	32650092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
10373	chr8	-	2861	7	NIC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-241	intron_retention	FALSE	canonical	3	1106	junction_6	99.6550996632329	21	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85573498	85568719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85572695_85572878_85572981_85573336
10374	chr15	-	2329	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	101	1987	101	1614	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	373	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTAAAACGAAACTAGTCT	256	False	NA	NA	False	NA	NA	NA	37007545	36999257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
10375	chr18	+	2875	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	-106	0	-23	0	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	21134941	21161281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
10376	chr5	-	2949	15	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	233.56139122164	777	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGATCACTGGCTCTAT	NA	False	NA	NA	False	NA	NA	NA	38719009	38684155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692682_38694479_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
10377	chr17	-	4920	15	NNC	ENSMUSG00000024039.16	novel	2403	16	NA	NA	-5	0	intron_retention	FALSE	non_canonical	0	0	junction_8	81.0701699084169	26	128	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	1940	False	NA	NA	False	NA	NA	NA	31856144	31831614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31838218_31839902_31839988_31840411_31840538_31841400_31841863_31842735_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
10378	chr2	+	2964	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	420.408113918512	2	97	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	651	False	NA	NA	False	NA	NA	NA	26279357	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285987_26286150
10379	chr11	-	3649	9	NIC	ENSMUSG00000018669.15	novel	2201	13	NA	NA	0	-6	intron_retention	FALSE	canonical	3	831	junction_8	124.21956367658	7	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCCTTCGTGGCTGGCA	NA	False	NA	NA	False	NA	NA	NA	96807322	96798647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96804309_96804490_96804623_96806976_96807023_96807209
10380	chr7	-	3720	6	FSM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	58	10	-14	-10	multi-exon	FALSE	canonical	3	274	junction_2	12.1556571192182	271	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTTTACTATTTTTGT	2755	False	NA	NA	False	NA	NA	NA	141456166	141435329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
10381	chr3	+	1595	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	19	413	9	3	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	776	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	90383472	90395273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
10382	chr4	+	2560	11	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	1173	3	NA	NA	-156249	182333	multi-exon	FALSE	non_canonical	0	0	junction_1	153.562495421245	1	109	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147060245	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147060315_147217303_147217441_147219028_147219122_147316807_147316901_147327755_147327819_147337800_147337875_147413456_147413566_147415724_147415863_147416278_147417135_147417477_147418091_147600209
10384	chr7	-	4308	8	NIC	ENSMUSG00000030741.16	novel	3251	10	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	390	junction_5	37.3341229265384	3	98	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTGACTGACTGCTTG	NA	False	NA	NA	False	NA	NA	NA	125976586	125969240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125974376_125975845_125975912_125976008
10385	chr5	+	2849	8	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	995.176366278862	1	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTATCTTTCATTTATTC	NA	False	NA	NA	False	NA	NA	NA	34493775	34510777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574_34508774_34508825
10386	chr2	+	3724	33	NNC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-9	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	77.7776277280299	1	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACTTCCTCCTAGACTA	NA	False	NA	NA	False	NA	NA	NA	180961522	180997824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977667_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993486_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716
10387	chr1	-	2444	14	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1232.64602577223	20	32	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287389	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128265950_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287191
10388	chr18	+	6954	28	NNC	ENSMUSG00000040560.11	novel	7135	28	NA	NA	-5	1	intron_retention	TRUE	non_canonical	0	0	junction_27	12.7134721108694	59	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGGTGGTTTTTATCCT	NA	False	NA	NA	False	NA	NA	NA	63841778	64122826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_63841991_63853288_63853461_63853827_63853935_63857191_63857271_63860689_63860865_63861509_63861587_63863160_63863281_63868649_63868796_63869474_63869578_63871813_63871956_63872175_63872425_63873097_63873319_63888106_63888303_63893641_63893857_63910598_63911369_63912939_63913029_63927295_63927415_63929228_63929353_63958195_63958310_63998355_63998578_64037100_64037288_64057882_64058001_64059649_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226_64122393_64122433
10389	chr11	-	6049	32	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	63	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	360.294985514493	1	246	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAAATAACATGTAGAAT	NA	False	NA	NA	False	NA	NA	NA	86648264	86585488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603415_86603533_86608723_86608885_86610011_86610186_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628099_86648079
10390	chrUn_JH584304v1	-	2552	7	Intergenic	novelGene_4665	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_1	266.626715757359	86	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	59731	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53770_54335_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
10391	chr4	-	2590	13	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-6	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	773.086935423321	9	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGACATGTTGTAA	9809	False	NA	NA	False	NA	NA	NA	43000439	42980011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42986217_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
10392	chr2	-	716	6	NNC	ENSMUSG00000027286.17	novel	1961	6	NA	NA	-9624	-587	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAACAGGCGCGCGGTTTG	NA	False	NA	NA	False	NA	NA	NA	120449625	120439885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120440022_120442813_120442909_120443528_120443602_120446335_120446466_120448350_120448461_120449453
10394	chr16	-	2773	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	211	53	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_10	296.978803957454	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCGAATATAATATGTTTT	6477	False	NA	NA	False	NA	NA	NA	38370373	38345445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370235
10396	chr12	+	5280	15	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-10	4	combination_of_known_junctions	FALSE	canonical	3	104	junction_7	16.9175672492428	101	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTGGACACTTTCTTAT	NA	False	NA	NA	False	NA	NA	NA	78795670	78887364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
10397	chr8	-	3021	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	-28	-446	-28	446	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	428	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAATTATGTATAGT	7658	False	NA	NA	False	NA	NA	NA	111724460	111701181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
10398	chr7	-	926	1	Genic_Genomic	ENSMUSG00000109441.2	novel	NA	NA	NA	NA	-47	-2593	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAGGACCTAGGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	4915403	4914477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_4914500_4915400
10399	chr13	+	3654	12	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	68.3920395541774	5	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTTGTTATTCTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	104315346	104339884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738_104338690_104338768
10400	chr10	+	2673	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-4	-14	intron_retention	FALSE	canonical	0	0	junction_13	565.537593118945	2	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTTTATAACCTCTGTC	1604	False	NA	NA	False	NA	NA	NA	79690481	79700179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694905_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698881_79698978
10401	chr16	-	2459	17	NNC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	552.936238977877	17	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTATCTAGCATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	91443819	91418283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422393_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
10402	chr6	-	4319	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	9	-1032	0	991	multi-exon	FALSE	canonical	3	71	junction_1	41.7378724901018	193	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAATGAGAAATTCTAA	7655	False	NA	NA	False	NA	NA	NA	35110650	35020898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
10403	chr17	-	1966	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	5	17	5	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	38	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90217872	90215906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_90215900_90217900
10404	chr4	+	5003	26	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	-2	5	combination_of_known_junctions	FALSE	canonical	1	26	junction_4	22.9307130285999	128	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCTCTAGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	126450795	126487701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444_126486595_126486835
10405	chr9	+	1681	5	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	8494	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	660.608195150499	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAATTTCCTGTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	108192521	108215128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108192582_108204782_108204941_108208069_108208191_108212249_108212357_108213893
10406	chr5	-	2555	7	Antisense	novelGene_ENSMUSG00000029110.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCGTCCGGCACCGGCCCG	3511	False	NA	NA	False	NA	NA	NA	34510427	34493761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_34493886_34499865_34500024_34504118_34504245_34506006_34506089_34507251_34507414_34508131_34508178_34508570
10407	chr4	-	4064	9	NIC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	-821	-5	intron_retention	FALSE	canonical	3	1463	junction_8	195.111506580212	93	98	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	129419198	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129416895_129418038
10408	chr14	-	3686	29	NIC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-11	-1	intron_retention	FALSE	canonical	0	0	junction_27	77.8002741194478	38	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTATAAGGAAGCAGCTGT	9787	False	NA	NA	False	NA	NA	NA	55873099	55863179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
10409	chr14	-	2963	5	NIC	ENSMUSG00000042354.8	novel	1765	15	NA	NA	540	-24	intron_retention	FALSE	canonical	3	793	junction_4	109.664260358605	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATACAAGTATTTGC	NA	False	NA	NA	False	NA	NA	NA	30738347	30734414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735753_30736009_30736984_30737231
10410	chr12	+	3028	2	Genic_Genomic	ENSMUSG00000019969.15	novel	2690	12	NA	NA	7232	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAAGCGCTCTCTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	83778644	83781864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_83780128_83780319
10412	chr7	+	2573	16	NNC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	324.699587653299	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACACTGTTTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	79944186	79966003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861_79965365_79965866
10413	chr12	-	2962	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	-20	-2	-20	2	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	1409	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGCTGTTGAGATGTG	NA	False	NA	NA	False	NA	NA	NA	54909682	54905599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
10417	chrX	-	4249	24	Antisense	novelGene_ENSMUSG00000034160.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	70	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCGAAACAACACAAGCCG	NA	False	NA	NA	False	NA	NA	NA	100726821	100683681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100683715_100683821_100683932_100686612_100686760_100687549_100687795_100695741_100695813_100697579_100697727_100699228_100699345_100704855_100704936_100706962_100707161_100707448_100707590_100708249_100708350_100710882_100711041_100711123_100711222_100711583_100711764_100713360_100713520_100713634_100713725_100716051_100716178_100716646_100716818_100716926_100717044_100717145_100717317_100719752_100719908_100722314_100722566_100722827_100722946_100725754
10419	chr17	-	2933	2	Intergenic	novelGene_143	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	307	junction_1	0	576	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTCTGTTTCTTTTATC	273	False	NA	NA	False	NA	NA	NA	35219330	35215700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35218446_35219142
10421	chr1	+	2297	6	Antisense	novelGene_ENSMUSG00000117809.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	60	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAGAACCGCGACTGAGG	NA	False	NA	NA	False	NA	NA	NA	53383805	53391796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_53384139_53385738_53385919_53386171_53387718_53389145_53389222_53390038_53390093_53391688
10422	chrX	+	2685	19	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-473	intron_retention	FALSE	non_canonical	0	0	junction_13	1181.86131317522	1	84	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538745_20539054_20539211_20541824_20542143_20547556_20547754_20548141_20548244_20548347_20548453_20548742
10423	chr19	-	3279	18	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	292.005131016207	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576823	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40562253_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
10425	chr2	+	2925	3	NIC	ENSMUSG00000078906.10	novel	1281	4	NA	NA	-33	1660	combination_of_known_splicesites	FALSE	canonical	3	70	junction_1	222.5	39	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTTGAGGTCCCAGGTA	NA	False	NA	NA	False	NA	NA	NA	174852000	174862701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174852115_174858749_174858811_174859951
10426	chr1	-	3680	20	FSM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	9	-1	9	1	multi-exon	FALSE	canonical	3	144	junction_7	20.5845328266092	271	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTTTCCGTTTACTC	NA	False	NA	NA	False	NA	NA	NA	151304197	151243448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
10427	chr11	-	4374	12	NIC	ENSMUSG00000001036.18	novel	4452	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	139.344866197278	1	109	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	61470500	61408074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61438833_61438869_61444335_61444406_61456647_61456721_61470392
10428	chr12	+	3736	26	FSM	ENSMUSG00000020608.8	ENSMUST00000218022.2	5272	26	4	1532	4	204	multi-exon	FALSE	canonical	3	71	junction_3	127.798754297528	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTTTCCAGGTTG	4540	False	NA	NA	False	NA	NA	NA	11316109	11368248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
10432	chr14	-	4060	24	Fusion	ENSMUSG00000091144.3_ENSMUSG00000068245.15_ENSMUSG00000071350.13	novel	2995	14	NA	NA	0	-5	intron_retention	TRUE	non_canonical	0	0	junction_1	50.1634003002053	46	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACTGAAGTGTGCACCG	NA	False	NA	NA	False	NA	NA	NA	59678324	59586185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_59586365_59618460_59618934_59620759_59620832_59622232_59622365_59622915_59622980_59623729_59623798_59624795_59624846_59626717_59626849_59628314_59628423_59630478_59630601_59639782_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
10434	chr5	+	4043	12	NNC	ENSMUSG00000014932.16	novel	1403	5	NA	NA	6085	0	intron_retention	FALSE	canonical	3	45	junction_1	214.878516514574	510	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	32774763	32844401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_32774875_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
10435	chrX	+	3452	5	NNC	ENSMUSG00000060090.17	novel	4417	5	NA	NA	-5119	-737	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	174.833313473148	6	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAATGGTTCAATGCTAC	NA	False	NA	NA	False	NA	NA	NA	20225600	20266355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20225721_20243119_20243786_20247943_20248059_20263459_20263546_20263890
10436	chr14	-	2744	9	NNC	ENSMUSG00000023110.13	novel	1094	10	NA	NA	2	1429	intron_retention	FALSE	canonical	0	0	junction_1	312.416163754374	1	120	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTACCTTCAGCCATCC	4861	False	NA	NA	False	NA	NA	NA	54754816	54747028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54748507_54748593_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54754703
10437	chr5	+	3685	3	FSM	ENSMUSG00000046079.17	ENSMUST00000060531.16	3923	3	233	5	233	0	multi-exon	FALSE	canonical	3	145	junction_1	205.5	8	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4304	False	NA	NA	False	NA	NA	NA	105848067	105963076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_105848121_105880095_105880241_105959589
10438	chr6	-	3136	24	FSM	ENSMUSG00000025607.16	ENSMUST00000048774.13	3961	24	-24	849	1	9	multi-exon	FALSE	canonical	3	177	junction_15	22.2825132553629	8	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTATACTTGAAATTTC	NA	False	NA	NA	False	NA	NA	NA	30873698	30748401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
10439	chr17	-	3064	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	-85	-3	-85	1	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	1264	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGACTTACTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	50600749	50586421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
10440	chr8	+	4826	25	NIC	ENSMUSG00000031691.15	novel	2941	25	NA	NA	61	-7	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	75.1550134167154	278	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAAACACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	85763857	85784202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85763921_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
10441	chr13	-	2019	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	851	224	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2601.65405392926	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGCTTGGGATTTTGTTT	6853	False	NA	NA	False	NA	NA	NA	58548228	58539539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540116_58540172_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146
10443	chr15	-	2910	8	NIC	ENSMUSG00000022451.13	novel	3025	9	NA	NA	40	3	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	174.476242462043	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTATGTTGGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	94487720	94475828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94487632
10444	chr2	+	1657	2	Antisense	novelGene_ENSMUSG00000027108.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAACACACCAGACACACA	NA	False	NA	NA	False	NA	NA	NA	72923150	72928227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_72924068_72927487
10445	chr15	-	4508	5	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	20161	212	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	275.802465543729	339	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATAGATCACTTTCTG	4535	False	NA	NA	False	NA	NA	NA	98640712	98634302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98636403_98636442_98638376_98638871_98638997_98639204_98639316_98640473
10447	chrX	-	3078	13	NNC	ENSMUSG00000031232.18	novel	4115	11	NA	NA	-47	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	97.9539290800641	1	74	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAATCTAAATTACATGGT	NA	False	NA	NA	False	NA	NA	NA	105055439	105011700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012546_105012671_105012837_105013670_105014633_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
10449	chr16	-	3283	20	NNC	ENSMUSG00000022710.18	novel	4488	31	NA	NA	-18644	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_17	230.112799029103	6	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCGATGACTGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	8574928	8507466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516671_8529996_8530057_8534378_8534484_8574679
10450	chr11	+	2647	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	5	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACTTCATCTGGCAA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55390900_55390944
10451	chr11	-	3782	22	NIC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_21	89.2116899491472	344	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	NA	NA	NA	103844850	103712607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103821901_103821950_103844795
10452	chr13	-	4138	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	15	4591	-6	2914	multi-exon	FALSE	canonical	3	467	junction_2	27.5	1667	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTGGTTGTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	18167919	18160505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_18164368_18166212_18166335_18167765
10453	chr12	-	3524	21	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	36	-463	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	149.192325539888	1	68	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTGAATTGAACTGTGC	2714	False	NA	NA	False	NA	NA	NA	59058767	59005631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006750_59006835_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
10454	chr11	+	2624	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	4251	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACTTCATCTGGCAA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55390353_55390420
10455	chr7	+	780	2	FSM	ENSMUSG00000063229.16	ENSMUST00000124696.8	625	2	8	-163	-5	163	multi-exon	FALSE	canonical	3	6684	junction_1	0	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGGGTAAATTTTTG	NA	False	NA	NA	False	NA	NA	NA	46495274	46497732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019
10456	chr2	+	2768	15	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	544.677680385569	2	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTTAGAAGACTAGAGT	651	False	NA	NA	False	NA	NA	NA	26279357	26287118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286016_26286172_26286403_26286589
10457	chr7	+	4463	5	FSM	ENSMUSG00000048897.16	ENSMUST00000164056.9	5871	5	-16	1424	-16	0	multi-exon	TRUE	canonical	3	72	junction_4	112.192635676322	411	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGACTGTACGTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	79674545	79742497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79740082
10458	chr18	+	4934	4	Genic_Genomic	ENSMUSG00000056682.9	novel	1238	3	NA	NA	-82722	-963	multi-exon	FALSE	non_canonical	0	0	junction_1	0	228	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGCTTGCGGCGAGCGC	4985	False	NA	NA	False	NA	NA	NA	77719187	77802186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_77723020_77730758_77730889_77761593_77762383_77802003
10459	chr18	+	3213	20	NIC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	3	-150	intron_retention	FALSE	canonical	3	782	junction_1	82.872929462359	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTTTCTCCCCTCACGT	-16	True	NA	NA	False	NA	NA	NA	3383227	3435235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
10462	chr9	+	4271	21	FSM	ENSMUSG00000038535.18	ENSMUST00000183410.8	4200	21	-62	-9	27	-7	multi-exon	FALSE	canonical	3	22	junction_19	12.0883208097734	40	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTCAGATTCCTGTTTGG	NA	False	NA	NA	False	NA	NA	NA	72182223	72271052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
10463	chr13	-	2202	11	Antisense	novelGene_ENSMUSG00000113894.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGGAAGAGAAGAGCAGGGA	NA	False	NA	NA	False	NA	NA	NA	3615821	3588142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3588338_3598856_3598971_3600988_3601088_3604410_3604547_3606313_3606513_3606925_3607056_3609989_3610092_3611838_3612036_3614537_3614685_3614858_3614910_3614989
10464	chr12	-	2176	7	FSM	ENSMUSG00000076432.14	ENSMUST00000155480.9	1970	7	53	-259	53	-2	multi-exon	FALSE	canonical	2	21	junction_1	1514.35583114846	9218	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTTGGCTGGTATTAGA	NA	False	NA	NA	False	NA	NA	NA	21467536	21440073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
10465	chrX	+	2697	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	9838	-727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	246.181924600487	1	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	NA	False	NA	NA	NA	150809261	150844963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150809348_150810826_150810949_150811036_150811178_150811960_150812044_150812186_150812271_150816828_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
10468	chr8	+	4722	30	NNC	ENSMUSG00000036270.17	novel	4645	29	NA	NA	15	4738	intron_retention	TRUE	canonical	0	0	junction_29	110.82064437629	260	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTATTTTTTTAATTAAT	3271	False	NA	NA	False	NA	NA	NA	106607527	106626278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616304_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301_106619849_106626264
10469	chr13	-	1822	16	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2515.83804990173	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4807	False	NA	NA	False	NA	NA	NA	58550274	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540094_58540194_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
10470	chr2	-	4047	14	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	-3	-10	combination_of_known_junctions	FALSE	canonical	3	25	junction_13	125.016069972941	912	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGGAAAATATCTGATGA	NA	False	NA	NA	False	NA	NA	NA	48839256	48792845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839105
10471	chr9	+	3405	22	NNC	ENSMUSG00000033335.18	novel	3502	21	NA	NA	-4	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	167.68351033178	2	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTACTGGTGGCTACGT	5862	False	NA	NA	False	NA	NA	NA	21336223	21418421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21336284_21336382_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
10472	chr7	+	2889	10	NIC	ENSMUSG00000030523.19	novel	2928	14	NA	NA	0	-16	intron_retention	FALSE	canonical	3	52	junction_1	315.23042718339	22	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCAATTCCTTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	63835206	63861159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
10475	chr7	+	3611	13	NIC	ENSMUSG00000008373.17	novel	3144	14	NA	NA	23	-8	intron_retention	FALSE	canonical	3	674	junction_1	80.2122185206219	180	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTGAACAGAGGGTGTGA	2963	False	NA	NA	False	NA	NA	NA	3633013	3644220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3633056_3633556_3633742_3633843_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
10476	chr2	+	2487	6	ISM	ENSMUSG00000027502.12	ENSMUST00000109132.10	944	8	-24	1561	22	-1561	5prime_fragment	FALSE	canonical	3	407	junction_4	21.811923344813	8	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAATGAACTGTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	172282497	172307013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096
10478	chr4	+	2287	13	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	-3	-359	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	455.388539845067	9	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGTGAGCTGCATCATC	852	False	NA	NA	False	NA	NA	NA	129083691	129113041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108484_129109077_129109213_129110470_129110613_129112223
10479	chr6	+	2360	15	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	284.942538066888	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5394	False	NA	NA	False	NA	NA	NA	125108828	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116801_125117783_125117843_125117998_125118122_125118236_125118466_125120963
10480	chr4	-	2842	13	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-3	-3	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	221.933548613093	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTCATGAGCTTCCTTC	5	True	NA	NA	False	NA	NA	NA	48473425	48430860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
10481	chr7	-	3960	8	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	403	junction_4	36.4842711427312	16	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCTGACTGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	125976588	125969241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125972063_125972941_125973009_125973093_125974376_125975845_125975912_125976008
10482	chr10	-	4580	19	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	188	-22	intron_retention	FALSE	canonical	0	0	junction_1	90.1140566719562	1	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCATCTAAACATGTAACA	NA	False	NA	NA	False	NA	NA	NA	61219121	61155456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61156821_61156868_61157022_61159002_61159159_61174977_61175119_61176709_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
10483	chr13	-	3135	18	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	2	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.2490872257808	21	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTGATGTAGCTTCG	NA	False	NA	NA	False	NA	NA	NA	119545531	119472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472645_119472782_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511211_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
10484	chr5	+	2089	8	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5279.91317182781	14	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTGAGTCATCTCTAG	487	False	NA	NA	False	NA	NA	NA	129097277	129101386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837_129099887_129100028
10485	chr5	+	2841	12	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	446.029962303798	930	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTGTGTGCTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	111478642	111536223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111481684_111481781_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
10486	chr14	-	2529	9	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1572.67795098043	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8749	False	NA	NA	False	NA	NA	NA	52341461	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312575_52312737_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52334778_52336002_52341345
10487	chr11	-	5158	12	FSM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	-4	814	-4	-814	multi-exon	TRUE	canonical	3	46	junction_6	16.0020659823186	231	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGTTTCTGAATCTCAA	NA	False	NA	NA	False	NA	NA	NA	103303517	103255914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_103257820_103258423_103258582_103258933_103258998_103261687_103261882_103264765_103264912_103267418_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
10490	chr3	-	4259	31	FSM	ENSMUSG00000027933.12	ENSMUST00000071488.8	4038	31	-229	8	-3	0	multi-exon	FALSE	canonical	3	31	junction_1	39.1651914615801	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGCCTGAGTTGACAT	NA	False	NA	NA	False	NA	NA	NA	90340839	90298702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90299219_90299299_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
10491	chr7	+	2383	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	337	2	42	1	multi-exon	FALSE	canonical	3	986	junction_1	0	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	412	False	NA	NA	False	NA	NA	NA	44465848	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
10492	chr15	+	2277	16	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	495.591121792955	6	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTAATGTTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	81756708	81799324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796456_81798438_81798561_81798828
10493	chr19	-	2984	7	NIC	ENSMUSG00000024764.11	novel	3231	8	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	182.726571685675	1	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	NA	False	NA	NA	NA	7218397	7203037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7218302
10494	chr13	+	2290	11	NNC	ENSMUSG00000101308.2	novel	1613	4	NA	NA	6369	73944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	54	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAGAAGAGGCAAATACT	NA	False	NA	NA	False	NA	NA	NA	106930946	107007248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984843_106993243_106993327_106993736_106993817_106997368_106997444_107002370_107002488_107007181
10495	chr14	-	3035	8	FSM	ENSMUSG00000040123.18	ENSMUST00000111285.9	5351	8	-19	2335	-19	405	multi-exon	FALSE	canonical	3	22	junction_6	24.4798959581623	119	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTTTGTTTTCTTGTG	8802	False	NA	NA	False	NA	NA	NA	57049192	57030379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57049048
10497	chr9	-	4277	24	Antisense	novelGene_ENSMUSG00000032115.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	223	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCGGACGCGGCGCACG	2009	False	NA	NA	False	NA	NA	NA	44303632	44290865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_44290891_44291807_44291907_44292111_44292207_44292350_44292429_44292549_44292706_44292810_44292887_44293137_44293319_44293747_44293864_44295403_44295598_44295733_44295869_44296080_44296271_44296425_44296602_44296863_44297060_44298544_44298619_44298981_44299176_44299299_44299474_44299572_44299664_44299781_44299901_44300087_44300223_44300334_44300419_44300526_44300767_44300871_44300927_44302136_44302181_44302282
10499	chr17	+	675	1	NIC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	10342	3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	321	False	NA	NA	False	NA	NA	NA	35471984	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35472000_35472700
10500	chr15	-	2467	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	7	1531	7	173	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATTAAATGCCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	11399744	11383917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
10502	chr8	+	2569	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	97	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	423.556812403405	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	NA	False	NA	NA	NA	75836348	75854325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848347_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
10503	chrX	+	2665	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	1	0	1	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	1555	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5949	False	NA	NA	False	NA	NA	NA	73348604	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
10504	chr11	+	3404	20	NNC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	107.568260876164	8	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGTTCTCACGTCACC	NA	False	NA	NA	False	NA	NA	NA	119158871	119176275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174597_119174907_119175050_119175272_119175426_119175830
10506	chrX	+	3400	10	ISM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	1268	8	1268	-8	3prime_fragment	FALSE	canonical	3	223	junction_8	19.0580659182198	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAACTAAGTCGCATTT	NA	False	NA	NA	False	NA	NA	NA	7564637	7576493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
10507	chr5	+	2681	10	NNC	ENSMUSG00000050017.12	novel	2632	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	432.941361182115	52	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478623	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
10508	chr2	-	4128	34	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.171419825742193	1	88	14	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCCTCCCTTCCGGTCCG	NA	False	NA	NA	False	NA	NA	NA	180997824	180961516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964304_180964592_180964687_180965154_180965236_180965474_180965536_180970393_180970472_180972585_180972669_180976702_180976770_180977684_180977835_180980022_180980144_180980844_180980881_180980951_180981033_180982286_180982385_180983315_180983366_180988618_180988698_180988803_180988886_180990965_180991101_180991255_180991368_180991459_180991503_180991687_180991772_180991916_180991993_180992424_180992505_180992817_180992963_180993037_180993162_180993370_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180996237_180996804_180996923_180997123_180997339_180997441_180997606_180997715
10509	chr11	-	2256	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1169.63592091727	2	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677878_106679149
10510	chr7	-	3345	20	FSM	ENSMUSG00000030766.16	ENSMUST00000106442.9	3336	20	-9	0	8	0	multi-exon	FALSE	canonical	0	0	junction_19	53.0955862029814	279	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	NA	False	NA	NA	NA	122969118	122878493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
10512	chr17	+	4516	13	Intergenic	novelGene_132	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAAAATGGCGGCGGCAG	NA	False	NA	NA	False	NA	NA	NA	32423881	32503106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_32425966_32430135_32430254_32431814_32432109_32432498_32432703_32433606_32433814_32439133_32439264_32440119_32440483_32440846_32441139_32443059_32443197_32444549_32444687_32448389_32448710_32472014_32472175_32503036
10513	chr1	-	4131	29	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9508	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	305.608025591807	1	79	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGAAGATAGTGATGATG	NA	False	NA	NA	False	NA	NA	NA	84827745	84722450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738480_84738641_84738731_84738810_84739559_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84792543_84792691_84822070_84822113_84827643
10514	chr2	-	3396	12	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-30	1359	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.519664175452	109	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACCTGCCAGCATCATGC	NA	False	NA	NA	False	NA	NA	NA	73044707	72921785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72923901_72923954_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
10515	chr9	-	2147	7	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	2141.33723147217	106	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775183	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110772696_110772955_110773258_110773312_110774891
10516	chr3	+	3527	12	FSM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	0	-910	0	-6	multi-exon	FALSE	canonical	3	501	junction_1	37.6308735565373	491	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTACCTCGGCCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	89328934	89337316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
10517	chr5	-	1830	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	17	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTTAAGACTTCAATT	NA	False	NA	NA	False	NA	NA	NA	135963387	135937742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938770_135939913_135940506_135963176
10521	chr11	-	2252	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1126.59438104771	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673379_106673456_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
10522	chr11	-	2162	10	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	45	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	600.334351285459	3	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCCATTGTCACTGCTG	3824	False	NA	NA	False	NA	NA	NA	120463622	120451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452029_120453277_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
10523	chr18	-	3034	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1567.55245127555	1	103	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATCCAGTCGTTGTAAT	204	False	NA	NA	False	NA	NA	NA	35087405	35070471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082074_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
10525	chr4	+	3177	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	16	5187	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	42.5910788780937	18	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGAAGTCTCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145136851	145181513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145176036_145177478_145180016
10526	chr6	+	5295	11	FSM	ENSMUSG00000071337.12	ENSMUST00000134142.8	3856	11	-35	-1404	-13	-4	multi-exon	FALSE	canonical	3	50	junction_4	43.462742665414	13	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTTTATTTCTTTGTAA	9731	False	NA	NA	False	NA	NA	NA	86381250	86409158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86397394_86400587_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
10527	chr10	+	2892	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-2	3	intron_retention	FALSE	non_canonical	0	0	junction_1	686.380947838411	1	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1587	False	NA	NA	False	NA	NA	NA	79690464	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79694553_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696673_79696804_79697849_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
10528	chr16	-	3227	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	1083	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	445.600139559	1	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTATCATTGTACCCAA	9199	False	NA	NA	False	NA	NA	NA	4866638	4831767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832730_4832775_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866177_4866218_4866613
10530	chr1	-	2184	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	1	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	2068.03757419541	3	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTAATACTTCCTAGAGG	NA	False	NA	NA	False	NA	NA	NA	86287121	86278211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284346_86284806_86285175_86285828_86285946_86286927
10532	chr16	+	3016	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	-22	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	15	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598549	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631086_13631680
10533	chr14	-	3867	11	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	non_canonical	1	6	junction_8	401.406576926687	10	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCAGTGGCTTG	6424	False	NA	NA	False	NA	NA	NA	66071363	66056486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067432_66067638_66069233_66070112_66070191_66071250
10534	chr10	-	4155	19	NIC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	214	-4	intron_retention	FALSE	canonical	3	320	junction_13	26.7752995625944	299	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTTTGCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	61219095	61155438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
10535	chr18	-	2518	16	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	45	-225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2170.14345045565	2	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	244	False	NA	NA	False	NA	NA	NA	35087365	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071399_35072021_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084470_35085495_35085537_35085729_35085789_35087222
10536	chr6	+	4585	14	FSM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	-46	11	-46	-11	multi-exon	FALSE	canonical	3	136	junction_10	10.7620855417108	194	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAAGCTCTGTTGGTGGG	NA	False	NA	NA	False	NA	NA	NA	146626446	146680299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
10537	chr2	+	1310	1	Intergenic	novelGene_2648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTTGAATTATCTCATC	NA	False	NA	NA	False	NA	NA	NA	71254806	71256116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_71254800_71256100
10539	chr17	-	3250	22	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-2	3	intron_retention	FALSE	canonical	3	801	junction_12	69.407338839688	447	28	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTGTGGGGTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	36280655	36267707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
10541	chr19	-	818	6	NNC	ENSMUSG00000035049.5	novel	4340	34	NA	NA	25259	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	170.855494497543	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGCTTGGCCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	41859353	41851282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41851752_41853610_41853670_41853959_41854028_41855144_41855212_41857208_41857259_41859248
10542	chr16	-	3550	16	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	277.014720828254	1	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2528	False	NA	NA	False	NA	NA	NA	21981794	21877758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898884_21900509_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
10543	chr11	+	4635	32	FSM	ENSMUSG00000017774.20	ENSMUST00000102505.10	4652	32	15	2	15	0	multi-exon	FALSE	canonical	3	31	junction_1	55.4580209849872	192	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGTCTTCCTGTGAGT	7852	False	NA	NA	False	NA	NA	NA	75541344	75564734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75541591_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
10544	chr11	+	1545	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-48	multi-exon	FALSE	canonical	3	1960	junction_1	0	24	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATAGCCTTTTCTGGAC	NA	False	NA	NA	False	NA	NA	NA	120653619	120655197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
10545	chr13	-	3106	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18654	3078	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	34.1783557240544	66	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	74739499	74724398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74725525_74725953_74727579_74728971_74729033_74729232_74729360_74730309_74730368_74739390
10546	chr5	+	830	2	FSM	ENSMUSG00000029267.18	ENSMUST00000199194.2	673	2	-1	-156	0	156	multi-exon	FALSE	canonical	3	80	junction_1	0	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTAGAGAAGCTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	108213581	108217607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108213832_108217027
10547	chr3	-	1867	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30610	-2421	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCCCGAACGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	121251833	121220305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_121220476_121243595_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
10548	chr10	+	2856	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	6	2	intron_retention	FALSE	canonical	0	0	junction_1	476.714296862737	2	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1567	False	NA	NA	False	NA	NA	NA	79690444	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79694553_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
10549	chr17	+	4128	26	NNC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	36.5755328054152	160	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCCAGTATTTTTATT	NA	False	NA	NA	False	NA	NA	NA	25352367	25381072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366378_25366445_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
10550	chr8	+	2651	11	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	602.753382404446	21	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAAGCTGTGTTTCTTG	8828	False	NA	NA	False	NA	NA	NA	120637553	120684292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674629_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678752_120683552
10551	chr14	-	4119	29	ISM	ENSMUSG00000025280.9	ENSMUST00000026322.9	4687	31	19	3386	19	-2991	5prime_fragment	FALSE	canonical	3	105	junction_21	14.4943690684996	4	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACCAGAAAGCCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	24537101	24502149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521016_24521805_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
10552	chr9	+	3243	15	Antisense	novelGene_ENSMUSG00000032127.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	138	10	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCCGGAAGCGAAATCAC	4379	False	NA	NA	False	NA	NA	NA	44259424	44272944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44259882_44260199_44260423_44263893_44264069_44264209_44264407_44264509_44264649_44265128_44265591_44265707_44265853_44266260_44266448_44266995_44267148_44267524_44267725_44269363_44269614_44270434_44270597_44270903_44271049_44271138_44271285_44272741
10553	chr10	+	2866	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	58	2	-18	-2	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	1	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173660	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
10554	chr9	+	2561	22	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	11	-1	intron_retention	FALSE	canonical	3	468	junction_2	39.7523512902894	2	25	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGCGTCTCTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	108385302	108393133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392432_108392994
10555	chr12	+	2541	21	ISM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	8	15615	8	2672	5prime_fragment	FALSE	canonical	3	837	junction_20	111.680291457356	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTATGACTGCCTAT	7919	False	NA	NA	False	NA	NA	NA	76302079	76350962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615
10556	chr11	-	2827	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	-3	-82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.147467918033	1	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTGCTTCATTTTGCT	NA	False	NA	NA	False	NA	NA	NA	11758965	11750369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11752892_11752949_11753064_11756095_11756216_11758894
10559	chr2	+	2543	15	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	264	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	413.148222895407	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGATGTCCTTATGTCT	NA	False	NA	NA	False	NA	NA	NA	84868140	84877449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84874710_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
10560	chr10	+	2737	12	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	2	2	intron_retention	FALSE	canonical	0	0	junction_8	517.288464371574	1	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1610	False	NA	NA	False	NA	NA	NA	79690487	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696808_79698249_79698376_79698486_79698704_79698811_79698890_79698978
10561	chr5	+	3894	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-216	intron_retention	FALSE	canonical	0	0	junction_4	626.478354685051	1	176	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
10562	chr9	+	2692	12	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	4	intron_retention	FALSE	canonical	3	1280	junction_11	429.002398421314	21	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1178	False	NA	NA	False	NA	NA	NA	108437667	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440711_108440794_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
10563	chr17	+	3127	6	Antisense	novelGene_ENSMUSG00000071267.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGACACCACGGTTCCGGT	NA	False	NA	NA	False	NA	NA	NA	22145946	22181473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_22148471_22149346_22149473_22151972_22152095_22160706_22160832_22172868_22173033_22181407
10564	chr14	-	4798	28	NNC	ENSMUSG00000022100.15	novel	4472	28	NA	NA	30	282	at_least_one_novel_splicesite	FALSE	non_canonical	3	332	junction_19	43.0746632232567	205	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTTCAGCAGTCACGT	NA	False	NA	NA	False	NA	NA	NA	71004038	70901975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70903535_70904461_70904590_70906099_70906199_70906756_70906918_70907990_70908130_70908491_70908707_70909088_70909172_70914146_70914255_70915518_70915608_70918678_70918786_70919772_70919882_70920232_70920294_70921092_70921177_70922299_70922374_70922861_70922998_70925067_70925174_70925566_70925761_70928421_70928595_70930090_70930238_70931356_70931477_70933053_70933128_70933990_70934157_70936381_70936487_70939159_70939226_70940662_70940830_70942103_70942198_70944726_70944874_71003951
10565	chr9	-	4547	21	NIC	ENSMUSG00000032468.12	novel	4647	22	NA	NA	4	-19	combination_of_known_junctions	TRUE	canonical	3	18	junction_20	65.4877660330538	163	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAACTTCTTTAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	99450948	99360443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99450654
10566	chr18	-	5885	9	NNC	ENSMUSG00000024477.5	novel	1278	10	NA	NA	0	-1511	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	54.2096624228559	1	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAAGATTGTGTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	46413894	46369928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_46374769_46379628_46379738_46381937_46382204_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407652_46407776_46413746
10567	chr11	-	2243	8	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	9657	junction_7	1561.70931994402	80	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563141	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558601_69558847_69558938_69559021_69559375_69559469_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
10568	chr12	+	3374	6	NNC	ENSMUSG00000043061.11	novel	762	3	NA	NA	-2949	4	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	83.0744244638505	10	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	30631475	30641218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_30631943_30633704_30633774_30635468_30635590_30637198_30637254_30638472_30638567_30638650
10569	chr7	-	3474	8	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	107.175233203595	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTTACTTACTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	42155147	42122811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42124762_42125351_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42155033
10570	chr9	-	3060	25	NNC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	151.350305353361	622	23	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCCTGTGTCTTTATTGA	9685	False	NA	NA	False	NA	NA	NA	107648215	107617694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631260_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
10571	chr14	+	5439	9	NIC	ENSMUSG00000021962.10	novel	5576	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	24	junction_5	46.725093632865	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATTGTGTTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	30201591	30249020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30240875_30241635_30243546_30243613_30244684_30244904_30245182
10572	chr2	+	2650	15	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-62	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	551.457091231392	2	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGGAAATGACTTTGGA	NA	False	NA	NA	False	NA	NA	NA	84867515	84877431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868861_84870513_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873150_84874686_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
10573	chr2	+	2679	10	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	43	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	511.154684133004	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8612	False	NA	NA	False	NA	NA	NA	72306545	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72306829_72307129_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
10574	chr8	+	2776	13	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	274.242124874272	8	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGAGGCTCACTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390519_107396081
10575	chr9	+	4020	18	FSM	ENSMUSG00000025898.7	ENSMUST00000027027.7	4446	18	496	-70	0	70	multi-exon	FALSE	canonical	3	200	junction_7	32.0504576240346	195	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATCCTGCTCACTGC	9	True	NA	NA	False	NA	NA	NA	3404087	3479306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
10576	chr1	-	2390	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2064.26858545573	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287086	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285176_86285828_86285946_86286927
10577	chr4	+	3394	15	NIC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	0	-8	intron_retention	FALSE	canonical	3	755	junction_6	70.225620361105	5	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATCTGAGAACAATGGGT	9118	False	NA	NA	False	NA	NA	NA	152018195	152065667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
10579	chr2	+	3481	23	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	173.623756086792	85	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428744	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462309_118462891_118462931_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
10580	chr12	+	6568	15	FSM	ENSMUSG00000035293.14	ENSMUST00000054308.13	6803	15	227	8	0	-8	multi-exon	FALSE	canonical	3	106	junction_10	21.5917595770389	158	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGGTCGATGTGAGAT	NA	False	NA	NA	False	NA	NA	NA	51395070	51423761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
10581	chr7	+	2386	2	NNC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAACCAGACTTGCTG	285	False	NA	NA	False	NA	NA	NA	44465721	44480223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465795_44477910
10582	chr12	+	2890	15	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-7	-15	intron_retention	FALSE	non_canonical	0	0	junction_1	139.498463893232	2	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTCTCAAACAGGGCT	NA	False	NA	NA	False	NA	NA	NA	85157659	85180847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157730_85158271_85158306_85162046_85162096_85165132_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85172771_85172858_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
10583	chr11	-	3344	20	NNC	ENSMUSG00000020923.18	novel	3286	20	NA	NA	2	107	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_1	185.313405267253	26	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACGTGAGCGAGCGATACA	9139	False	NA	NA	False	NA	NA	NA	102207528	102196642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102197593_102197752_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
10584	chr8	+	2465	16	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	464.761367681188	2	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGTAGTGCTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	75836196	75854317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836812_75839175_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
10585	chr4	+	2068	10	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-242719	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	40.4532957347417	4	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCAACAAGTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	147395014	147669644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147534439_147534577_147578832_147578926_147637751_147637884_147639766_147639865_147661528_147661587_147665698_147665826_147667290_147667436_147667927_147668443_147669013
10587	chr4	+	3088	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-1	-11	intron_retention	FALSE	canonical	3	675	junction_7	32.7713289324678	705	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAATTGAGTTAA	9697	False	NA	NA	False	NA	NA	NA	155648281	155675443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672476_155673066_155673150_155673784
10589	chr1	-	2388	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3033.36614239794	2	72	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287082	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280843_86281003_86281458_86281578_86282737_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
10591	chr11	+	4706	14	Antisense	novelGene_ENSMUSG00002076008.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	204	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGGGGGGCGGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	104224328	104360264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_104226034_104226274_104226524_104227044_104227160_104227374_104227433_104228951_104229076_104233190_104233338_104234316_104234502_104241313_104241481_104247511_104247703_104248306_104248427_104269514_104269652_104314746_104316120_104358464_104358579_104360243
10592	chrX	+	4143	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	35	17	3	-17	multi-exon	FALSE	canonical	3	286	junction_1	56.5	1660	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTCTGTAATGCTACTG	NA	False	NA	NA	False	NA	NA	NA	70860398	70868295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_70860547_70863673_70863784_70864410
10593	chr15	-	2715	14	ISM	ENSMUSG00000022391.17	ENSMUST00000170134.9	2984	17	7748	11	7246	-6	3prime_fragment	FALSE	canonical	3	744	junction_1	43.4520752120849	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCAGAGGCCCGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	81606354	81588459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099
10594	chr17	+	4312	1	NIC	ENSMUSG00000024044.20	novel	4692	22	NA	NA	-1879	-4027	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	117	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTACCTTCTGCTCCACCTT	NA	False	NA	NA	False	NA	NA	NA	69579891	69584203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_69579900_69584200
10595	chr7	-	2885	4	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	231	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.436916635385	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	42126556	42122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123497_42123694_42125252_42125494_42126108_42126528
10596	chr4	-	5306	2	FSM	ENSMUSG00000029036.19	ENSMUST00000126725.2	836	2	-4288	-182	-1290	-11	multi-exon	FALSE	canonical	3	832	junction_1	0	64	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTTTCTGATTTTGCTT	6009	False	NA	NA	False	NA	NA	NA	155835090	155825108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155825810_155830485
10597	chr9	-	3104	18	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	-69	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	112.681810029031	345	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	NA	False	NA	NA	NA	53159422	53009934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068522_53071183_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149343_53149479_53151776_53151838_53159117
10598	chr15	-	3125	8	FSM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	34	-2	4	0	multi-exon	FALSE	canonical	3	86	junction_6	194.457277192347	3	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033498	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
10600	chr8	+	3377	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	17	1036	-11	-152	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	1	139	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGACCACTATGCATGC	5066	False	NA	NA	False	NA	NA	NA	107329999	107395842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
10601	chr12	-	1713	1	FSM	ENSMUSG00000066632.4	ENSMUST00000085735.4	1255	1	-41	-417	-41	417	mono-exon	FALSE	NA	NA	NA	NA	NA	21	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAAAAAAAAAATCTTC	NA	False	NA	NA	False	NA	NA	NA	10950281	10948568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_10948600_10950300
10602	chrX	+	2441	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	120	1	-60	-1	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	3	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTGTGCTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473280	100492196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
10603	chr7	-	1956	15	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-12	1	intron_retention	TRUE	canonical	1	2	junction_14	649.863769083449	9	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGTGTCCTCAGAG	9170	False	NA	NA	False	NA	NA	NA	45084059	45071319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675_45083848_45084043
10604	chr4	+	180	1	Intergenic	novelGene_1994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	138702062	138702242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_138702100_138702200
10607	chr7	-	3485	9	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	8	-10	intron_retention	FALSE	canonical	3	13	junction_7	85.5415651890939	3	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAACAAATATGACTTTA	9612	False	NA	NA	False	NA	NA	NA	3218923	3204507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3209382_3211070_3211249_3213722_3214128_3218840
10608	chrX	-	4394	28	ISM	ENSMUSG00000031161.16	ENSMUST00000033501.15	4142	29	65	13	14	-11	intron_retention	FALSE	canonical	3	320	junction_26	43.7256065642336	35	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTACAAAACCTGAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	7814063	7796373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363
10609	chr15	-	2541	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-22	294	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	756.707120798177	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAACAGAGTTGAATTAT	NA	False	NA	NA	False	NA	NA	NA	11399709	11383796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384221_11385156_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
10610	chr19	-	2287	13	NIC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-27	-1	intron_retention	FALSE	canonical	3	2912	junction_8	214.261311771916	215	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3736	False	NA	NA	False	NA	NA	NA	7017362	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
10611	chr12	+	3243	3	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	12	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	329.5	3	67	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCTGAGTCGTTCATG	NA	False	NA	NA	False	NA	NA	NA	86516902	86568392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535339_86565594
10612	chr9	-	3859	23	NNC	ENSMUSG00000032480.18	novel	4441	23	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	186.97772992419	1	75	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGTGCTGCTGTCCTCC	NA	False	NA	NA	False	NA	NA	NA	109946457	109913392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913937_109914017_109914071_109914288_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938102_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109946425
10613	chr12	+	2527	7	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-63	intron_retention	FALSE	canonical	3	5890	junction_1	179.218132143176	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAGTCTTGAACTTTCA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659
10615	chr14	-	2621	15	NNC	ENSMUSG00000021810.4	novel	3132	14	NA	NA	3	-404	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	138.101504373428	394	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTGTTCAGTCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	20398131	20370323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20370667_20370715_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
10616	chr2	+	2087	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	708.439432663136	2	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116370	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119289_130119395_130119545_130119768_130119891_130120075_130120211_130120816
10617	chr9	-	3694	18	NIC	ENSMUSG00000031996.18	novel	3634	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	434.500086604727	819	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8715	False	NA	NA	False	NA	NA	NA	31123111	31060852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31067485_31067522_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
10619	chr18	-	2639	21	Antisense	novelGene_ENSMUSG00000024271.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTCCGCCCCAGAGCGG	NA	False	NA	NA	False	NA	NA	NA	24771869	24737017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_24737188_24739911_24739993_24742686_24742754_24744965_24745125_24745502_24745582_24747471_24747536_24748215_24748284_24748944_24749083_24750456_24750552_24752132_24752233_24755132_24755290_24755530_24755725_24758568_24758635_24759180_24759274_24759443_24759507_24760055_24760123_24764413_24764608_24765814_24765936_24767393_24767528_24767955_24768064_24771448
10620	chr7	+	5316	7	NNC	ENSMUSG00000044997.4	novel	696	3	NA	NA	-28862	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGAGCGGCGAGCCGGTC	7016	False	NA	NA	False	NA	NA	NA	35473154	35502424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35475753_35475862_35475996_35487140_35487257_35491071_35491188_35492947_35495044_35500862_35500956_35502260
10621	chr11	-	2086	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_12	707.716025127467	401	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5240	False	NA	NA	False	NA	NA	NA	88846252	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846091
10622	chr1	-	2146	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2590.59788623462	2	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287096	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278585_86278705_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284810_86285175_86285828_86285946_86286927
10624	chr1	-	4437	29	NNC	ENSMUSG00000042699.12	novel	4616	28	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	52.0373688333878	11	85	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGTGTCATTGATGTT	NA	False	NA	NA	False	NA	NA	NA	153363400	153331505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_153332276_153332395_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335132_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341522_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
10625	chr18	+	4210	22	FSM	ENSMUSG00000024498.17	ENSMUST00000237602.2	4417	22	19	188	5	51	multi-exon	FALSE	canonical	3	436	junction_6	86.5887404766016	413	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTTTTTTATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	42644570	42708670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
10626	chr18	-	3152	23	NNC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.286480702605	2	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGAAGGAAAACTCTGGC	NA	False	NA	NA	False	NA	NA	NA	34757654	34732891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34733149_34735260_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34738980_34739040_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
10627	chr8	-	3051	11	Antisense	novelGene_ENSMUSG00000000303.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	71	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGCGCAGAGGCTGCGG	6327	False	NA	NA	False	NA	NA	NA	107396878	107329999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107330175_107330917_107331038_107375630_107375857_107380137_107380277_107380389_107380552_107383455_107383599_107384369_107384546_107384820_107384951_107386220_107386403_107387425_107387615_107395469
10628	SIRV7	-	2433	5	FSM	SIRV7A	SIRV701	2462	5	31	-2	26	-1	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	2	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147892	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
10629	chr16	-	3923	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	-6088	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_10	297.87111306738	3	81	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGGCTCCTCATTTACT	142	False	NA	NA	False	NA	NA	NA	38376708	38345498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38375367
10630	chr6	-	2339	7	NNC	ENSMUSG00000039985.15	novel	2785	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847962	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823834_148824166_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
10631	chr16	-	3583	16	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	-19	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	277.347002868248	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2534	False	NA	NA	False	NA	NA	NA	21981788	21877811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879636_21880609_21880724_21882331_21882458_21883838_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
10633	chr7	+	2029	1	ISM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	12691	2	10342	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	6	False	NA	NA	False	NA	NA	NA	44478202	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44478200_44480200
10634	chr5	+	1356	8	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1813	3461	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	212	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGTCACTCTTTGTCAT	665	False	NA	NA	False	NA	NA	NA	138162851	138166369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165027_138165305_138165700_138165810_138165896_138166101_138166235_138166319
10635	chr1	+	2854	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	109.828275047913	258	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9766	False	NA	NA	False	NA	NA	NA	175708359	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_175708423_175708697_175708794_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
10636	chr1	+	3124	19	NIC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	-125	-1787	intron_retention	FALSE	canonical	0	0	junction_11	120.205906163313	3	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGAGAGTGTCAAGGGG	9245	False	NA	NA	False	NA	NA	NA	87603835	87645629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87627501_87628881_87628991_87629136_87629226_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411
10637	chr11	+	1650	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	183	267	91	-267	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3174	False	NA	NA	False	NA	NA	NA	75623877	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
10638	chr6	-	4012	5	ISM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	517	618	-11	-618	3prime_fragment	FALSE	canonical	3	165	junction_3	7.17635004720366	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTCTCTTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	86373619	86363605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895
10640	chr10	+	3371	15	Fusion	ENSMUSG00000020250.12_ENSMUSG00000056821.14	novel	894	3	NA	NA	-66	-2	multi-exon	FALSE	canonical	1	47	junction_2	264.185193238627	110	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACGCGTGCCTTCTGACT	NA	False	NA	NA	False	NA	NA	NA	82647890	82733542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_82647970_82654864_82654958_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
10641	chr2	-	3870	3	ISM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	10610	704	-648	-704	3prime_fragment	FALSE	canonical	3	593	junction_2	26	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACACCCACCCACCCTCC	3251	False	NA	NA	False	NA	NA	NA	168598511	168590955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168592381_168594373_168594661_168596353
10642	chr14	+	2581	8	FSM	ENSMUSG00000040618.8	ENSMUST00000226664.2	2631	8	-24	74	0	12	multi-exon	FALSE	canonical	3	1491	junction_4	101.915130758642	4	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAAGGCCAAGCCACAGG	9014	False	NA	NA	False	NA	NA	NA	55777845	55786317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782883_55785153_55785292_55785496_55785593_55785761
10643	chr3	-	5114	14	NIC	ENSMUSG00000028273.16	novel	5016	13	NA	NA	36	2	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	69.7017314056598	170	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACGCCTGGCCTTTTTTTT	7039	False	NA	NA	False	NA	NA	NA	142101418	141945348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_141987612_141987745_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
10644	chr11	-	4523	29	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	2	-76	intron_retention	FALSE	non_canonical	0	0	junction_8	63.6990692912497	9	77	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCACCAGTGTGTCCACA	NA	False	NA	NA	False	NA	NA	NA	60618047	60605044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607155_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
10646	chr6	+	2573	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	277.066891241487	1	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5458	False	NA	NA	False	NA	NA	NA	125108892	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114181_125114268_125114474_125114597_125114688_125116602_125116681_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
10647	chr10	-	3085	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	-3	17	-3	3	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	550	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTTGTCTTACACATTT	NA	False	NA	NA	False	NA	NA	NA	117546666	117524796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
10648	chr18	-	3179	21	NIC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	-14	4	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	142.329336399774	70	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCCTTTGGTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	34757621	34732878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34733295_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
10649	chr3	-	2082	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	-47	-169	-7	169	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	36	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGGAGTTGTAACACAAG	NA	False	NA	NA	False	NA	NA	NA	108352532	108333758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
10650	chr19	-	2026	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.574727405454	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3761	False	NA	NA	False	NA	NA	NA	7017337	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998388_6998470_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
10651	chr12	+	3311	10	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	-14	-91	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	168.304911425295	1114	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATGACAGTGGCTATTT	NA	False	NA	NA	False	NA	NA	NA	59113693	59120693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211_59118422_59118480
10652	chr6	-	3341	9	NNC	ENSMUSG00000053907.11	novel	1400	9	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	359.040300662753	2	106	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAACTGTGTCTATTAC	NA	False	NA	NA	False	NA	NA	NA	72416539	72409785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72410588_72410638_72412098_72412188_72412372_72412793_72413013_72413179_72413301_72413367_72413513_72413977_72414101_72414353_72414432_72416328
10653	chr13	-	3199	15	FSM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	-8	501	-8	82	multi-exon	FALSE	canonical	3	277	junction_10	41.7021141733919	222	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGCTATTGTGTGCGT	NA	False	NA	NA	False	NA	NA	NA	68730248	68709399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
10654	chr2	-	4905	7	NIC	ENSMUSG00000038914.16	novel	4613	6	NA	NA	-40	140	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	68.3091420593824	157	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTAGTATTTTGGACTCA	NA	False	NA	NA	False	NA	NA	NA	180351832	180322710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180332314_180332427_180333656_180333842_180351702
10658	chr15	+	2670	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	169	79	-6	-79	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATCATTTCACTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	81756678	81799255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
10659	chr1	+	4008	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	379	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTAGAGTCTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	152969229	152995003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
10661	chr2	-	2175	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-18	-62	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5314.56935528165	6	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGATCCCCAATGTTGG	3718	False	NA	NA	False	NA	NA	NA	154734769	154713399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726292_154729690_154729728_154730102_154730281_154734609
10662	chr10	-	4375	21	Antisense	novelGene_ENSMUSG00000019978.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	125	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGAAATCCAGTTCCCGA	NA	False	NA	NA	False	NA	NA	NA	25399417	25308483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_25308594_25317468_25317953_25319636_25319851_25336687_25336793_25343991_25344037_25345093_25345168_25347314_25347538_25348974_25349060_25354904_25355058_25355563_25355662_25360103_25360277_25364846_25364990_25369462_25369526_25371340_25371489_25377474_25377528_25377719_25378284_25380029_25380156_25382070_25382170_25383672_25383754_25388868_25388978_25398192
10663	chr7	-	3214	12	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	5	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	76.951524936694	2	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAACAAATATGACTTTA	9609	False	NA	NA	False	NA	NA	NA	3218926	3204507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3206105_3206136_3207787_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
10664	chr6	+	2029	8	Antisense	novelGene_ENSMUSG00000030177.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACAGATTCTGAATCTTT	NA	False	NA	NA	False	NA	NA	NA	120301291	120318992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_120302452_120306051_120306207_120306293_120306423_120308774_120308993_120311729_120311879_120315026_120315122_120316095_120316158_120318931
10665	chr5	+	3831	10	NNC	ENSMUSG00000041264.17	novel	3827	10	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	168.360797172891	438	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121476	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149121617_149122294_149122472_149124517_149124691_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
10666	chr6	+	2495	12	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	1	21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	651.866030955786	1	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCATTTCCAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	71808315	71852262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829743_71829852_71830156_71830257_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
10667	chr1	+	6448	24	Antisense	novelGene_ENSMUSG00000102687.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	23	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCCGGCCGCCCGAGGGC	NA	False	NA	NA	False	NA	NA	NA	119472766	119576677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_119476928_119477618_119477750_119478252_119478292_119481933_119482010_119482780_119482870_119495521_119495589_119497772_119497903_119500534_119500634_119506643_119506810_119526735_119526850_119527926_119527970_119535700_119535824_119536846_119537016_119543074_119543148_119544133_119544225_119545096_119545182_119545283_119545405_119547896_119547948_119548402_119548447_119549612_119549695_119551655_119551701_119561274_119561379_119570206_119570389_119576514
10669	chrX	-	2734	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-6	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	415.306080494697	3	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTACAGTTCTTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	158921358	158905210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906126_158906182_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
10670	chr4	+	5723	7	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	-10	intron_retention	FALSE	canonical	3	85	junction_1	44.8293058909757	14	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATAAGAGTTGTTGA	8303	False	NA	NA	False	NA	NA	NA	156194486	156211710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156206874_156207991_156208127_156208432_156208580_156209873
10671	chr8	+	2662	21	NIC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	-23	-5	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	262.309259272333	52	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAACATTCTTTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	94941168	95041483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_94941260_94954290_94954484_94970281_94970400_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
10672	chr6	-	2909	16	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	65.8327848078414	1	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	NA	False	NA	NA	NA	146479342	146451129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467990_146468194_146476199_146476275_146477722_146477959_146478798
10673	chr13	+	4316	3	NNC	ENSMUSG00000045767.10	novel	4652	2	NA	NA	156	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116.5	12	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGCTCTGTACTACTT	NA	False	NA	NA	False	NA	NA	NA	55841092	55851307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55841161_55846885_55848027_55848200
10675	chrX	+	3016	13	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-12	-8	intron_retention	FALSE	canonical	3	147	junction_5	703.139403556175	3	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCCTATTTTGAATTTGC	NA	False	NA	-45	True	NA	NA	NA	74139679	74153375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149988_74150777_74150857_74151784_74151911_74152301
10677	chr1	+	2229	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-3	-9	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	619.894987522528	5	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTATAAGGCAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	59724176	59750660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731613_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
10678	chr1	+	2843	24	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	130	2102	57	-2102	5prime_fragment	FALSE	canonical	3	1352	junction_6	93.9865654237414	1	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGAAGAGGAAGAGCAAGA	NA	False	NA	NA	False	NA	NA	NA	85992470	86064771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684
10679	chr7	+	2898	13	NIC	ENSMUSG00000038943.17	novel	3026	14	NA	NA	-8	-1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	350.210888846516	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTTTTGTCTTCAA	NA	False	NA	NA	False	NA	NA	NA	79944189	79966004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79944340_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
10680	chr5	+	2686	10	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	450.57691413959	21	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478623	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495726_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
10681	chr17	+	2163	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	237	10	61	1	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTCTCTAGTCTTAGTA	NA	False	NA	NA	False	NA	NA	NA	21165809	21186168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
10682	chr12	+	2527	15	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_7	123.109044081635	3	35	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCGGGATCTGTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	85157655	85180864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166032_85168760_85168914_85169553_85169631_85170547_85170646_85175187_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
10683	chr15	+	2562	11	FSM	ENSMUSG00000023010.16	ENSMUST00000161250.8	1148	11	0	-1414	0	-1	multi-exon	FALSE	canonical	3	52	junction_1	709.276455269735	52	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99290866	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99290922_99297537_99297753_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
10684	chr7	+	5430	18	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-7	1	combination_of_known_junctions	FALSE	canonical	3	53	junction_14	49.6786907872893	246	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATGGACTGATGCTTAGA	NA	False	NA	NA	False	NA	NA	NA	140808689	140842664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840827_140841028_140841125_140841456_140841688_140841818_140842321
10686	chr11	-	3124	15	ISM	ENSMUSG00000018501.18	ENSMUST00000156740.9	4215	23	18421	-291	4307	95	3prime_fragment	FALSE	canonical	3	154	junction_6	91.7813506466897	2	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATCCCCTTGCTGTAGT	NA	False	NA	NA	False	NA	NA	NA	62231420	62208331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233
10687	chr16	-	3251	17	ISM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	6	3299	6	-2812	5prime_fragment	FALSE	canonical	3	1247	junction_16	255.622249373954	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCATATAATTGAAATGAAG	NA	False	NA	NA	False	NA	NA	NA	91443834	91421372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
10688	chr2	+	2462	11	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	5	0	1	intron_retention	FALSE	canonical	3	1876	junction_9	242.391501501187	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075
10689	chr4	+	5472	9	NIC	ENSMUSG00000028248.16	novel	2438	10	NA	NA	0	-22	intron_retention	FALSE	canonical	3	26	junction_3	143.576416935373	33	131	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTAGTTCATTTTTGTTA	-11	True	NA	NA	False	NA	NA	NA	21848047	21875234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21859308_21860877_21860992_21861986_21862178_21865876_21866015_21869515_21870406_21871437_21871609_21873585
10691	chr6	-	2487	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	-91	3	-91	-3	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	2122	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	8799	False	NA	NA	False	NA	NA	NA	47790455	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
10692	chr4	+	2607	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2572	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	123.090973491569	473	90	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147576867	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578938_147592042_147592098_147595209_147595337_147596801_147597526_147598030_147598434_147599353_147599762_147599871
10693	chr2	+	4171	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	49	-11	intron_retention	FALSE	canonical	3	39	junction_2	53.8659186321244	13	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAGTAAGATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	180367104	180384062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
10694	chr15	+	2512	17	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	479.929682349404	1	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756683	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797404_81798438_81798561_81798828
10695	chr17	+	2921	6	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-16	-2028	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1305.35916896462	30	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTAACAAAGTATCCAGTG	NA	False	NA	NA	False	NA	NA	NA	13226866	13236993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912_13235044_13235792
10696	chr4	-	3684	11	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-18	-10	combination_of_known_splicesites	FALSE	canonical	3	42	junction_7	255.6	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCAGATGTAAACGGACT	6746	False	NA	NA	False	NA	NA	NA	126096481	126057888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126073704_126074608_126080227_126080382_126088109_126088198_126096362
10697	chr17	+	3070	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	614.502993392944	1	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4853	False	NA	NA	False	NA	NA	NA	87979949	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993849_87996369_87996570_88003922_88004033_88014609_88014734_88015891_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
10698	chr5	+	4048	12	NNC	ENSMUSG00000014932.16	novel	1403	5	NA	NA	6074	-6	intron_retention	FALSE	canonical	3	45	junction_1	214.878516514574	11	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATCTATGTATTCTTT	NA	False	NA	NA	False	NA	NA	NA	32774752	32844395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_32774875_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
10699	chrX	-	2986	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3352	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	452.766754935695	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227940	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085587_23085727_23087092_23094812_23094927_23101464_23102305_23113743_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
10700	chr11	-	2558	10	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-10	intron_retention	FALSE	canonical	3	2002	junction_5	436.276953605062	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTCTGACTTGCTGTTT	9743	False	NA	NA	False	NA	NA	NA	106890290	106879464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106888162_106890184
10701	chr19	-	4574	16	NIC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-16	4	intron_retention	FALSE	canonical	3	1425	junction_8	73.0647809975656	30	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCTTTGGTTTAATGTC	NA	False	NA	-57	True	NA	NA	NA	27404525	27367456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_27367714_27371637_27371729_27373694_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
10702	chr7	-	3146	8	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.633050574122	105	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTTACTTACTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	42155137	42122811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123341_42124218_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
10703	chr7	-	2410	21	NIC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	10	1	combination_of_known_junctions	FALSE	canonical	3	121	junction_3	295.222475431665	10	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153807	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143113446_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
10706	chr7	+	4153	8	Intergenic	novelGene_2932	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	114	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCACAAGCGGTCCGAGC	NA	False	NA	NA	False	NA	NA	NA	42122806	42155121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42123497_42123688_42124372_42124515_42126110_42126530_42126639_42137893_42137977_42138859_42139703_42150782_42150840_42155026
10707	chr6	-	6428	10	Antisense	novelGene_ENSMUSG00002075822.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	103	53	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCTCCCACCGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	42262201	42241977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_42242130_42244430_42244588_42244837_42244995_42245139_42245221_42245817_42245912_42246157_42246389_42250848_42250978_42253626_42253718_42256708_42256859_42257015
10708	chr17	-	3175	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-25	-4	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	29.5607848339654	16	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTTGGACTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	22181470	22145944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160757_22160832_22172868_22172962_22181236
10709	chrX	-	2845	14	FSM	ENSMUSG00000057421.13	ENSMUST00000113864.3	2581	14	-254	-10	-205	10	multi-exon	FALSE	canonical	3	26	junction_5	331.353544718678	1030	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTGTGAGATGAGGG	NA	False	NA	NA	False	NA	NA	NA	95000773	94978930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991003_94991055_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
10710	chr14	-	2708	15	NNC	ENSMUSG00000022031.7	novel	2851	15	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.551930200837	8	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAAAGAGTCGTCGTGT	3471	False	NA	NA	False	NA	NA	NA	65830497	65767905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65769050_65784582_65784646_65785403_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
10711	chr6	-	3712	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	229	18	6	-1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	1	189	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTCATGTCACAAGC	8919	False	NA	NA	False	NA	NA	NA	122719475	122704785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
10712	chr1	-	2631	3	Antisense	novelGene_ENSMUSG00000065228.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	191	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGATGGCGGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	160866107	160862735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160862763_160863319_160865841_160866024
10713	chr17	-	3062	16	Antisense	novelGene_ENSMUSG00000024151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	99	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCGCGTCGTTTCCCGCC	NA	False	NA	NA	False	NA	NA	NA	88031141	87979973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_87980232_87985632_87985793_87987229_87987505_87989956_87990108_87992866_87993013_87993721_87993856_87996367_87996568_88003920_88004031_88014607_88014733_88015878_88016028_88020053_88020153_88024880_88025126_88026022_88026229_88026710_88026962_88028308_88028475_88030754
10714	chr2	+	3022	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	139.039781867738	680	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAATGCAGATTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	144398231	144432663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_144398568_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
10715	chrX	-	2845	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	-25	1	-25	-1	multi-exon	FALSE	canonical	3	1240	junction_10	166.264514821681	1510	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAGTGTGCTTCTCATCT	NA	False	NA	NA	False	NA	NA	NA	93585774	93579080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
10717	SIRV3	+	2189	3	FSM	SIRV3A	SIRV303	2018	3	-18	-153	1	153	multi-exon	FALSE	canonical	3	1857	junction_1	482	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTCGAGAAAGTGTCCAAG	NA	False	NA	NA	False	NA	NA	NA	1945	7975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4568_4780_6057
10718	chr17	-	3314	7	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	379	1841	multi-exon	FALSE	canonical	3	28	junction_4	72.6934201515745	436	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATGTTGGGTATTGATT	NA	False	NA	NA	False	NA	NA	NA	37299558	37278245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37298307_37298416_37298546_37298823_37299396
10719	chr2	+	2729	20	ISM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	63	16	-54	-16	intron_retention	FALSE	canonical	3	666	junction_12	60.6004123112968	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACCTTCTTGAACAAG	NA	False	NA	NA	False	NA	NA	NA	166857175	166876851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392
10722	chr10	+	2956	13	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	-4	intron_retention	FALSE	canonical	3	966	junction_7	194.230300731431	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTGTCTTCCCTGAGC	1621	False	NA	NA	False	NA	NA	NA	79690498	79700189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
10723	chr8	-	3494	16	NNC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	9	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	148.970541457774	6	55	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73228996	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216638_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
10724	chrX	+	3114	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	121	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	250.937935553794	1	60	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799544	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809762_150816721_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829798_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
10725	chr11	-	5168	13	NNC	ENSMUSG00000020173.18	novel	5271	13	NA	NA	112	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	205.814692138341	1	116	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAACTGTCGTGTGGACTT	NA	False	NA	NA	False	NA	NA	NA	12414640	12186680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_12188060_12199649_12199914_12201026_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12259613_12259753_12293735_12293918_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414564
10726	chr2	+	2429	18	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	572.966662073589	123	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157120977	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121058_157121123_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
10727	chr6	+	9387	56	NNC	ENSMUSG00000030102.12	novel	1462	11	NA	NA	24158	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.0453655888571	88	76	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTGACTGGCTGGTGGC	1027	False	NA	NA	False	NA	NA	NA	108254076	108528071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_108254222_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971_108346127_108353722_108353823_108354645_108354807_108355122_108355265_108357876_108358036_108358148_108358322_108359065_108359186_108360581_108360777_108363580_108363833_108364324_108364467_108365145_108365300_108366327_108366516_108368791_108368935_108369491_108369547_108370865_108371032_108371195_108371367_108371795_108371862_108372936_108373075_108376210_108376337_108378273_108378475_108380232_108380485_108382360_108382487_108383050_108383180_108387769_108387891_108390729_108390915_108393770_108393920_108394849_108394962_108415260_108415394_108417457_108417649_108447983_108448165_108450367_108450622_108458183_108458385_108459857_108459969_108462203_108462300_108465446_108465570_108466775_108466881_108470661_108470855_108476068_108476192_108482837_108483014_108487655_108487821_108492718_108492915_108494486_108494580_108495650_108495791_108496245_108496412_108500248_108500410_108518863_108519026_108526713
10728	chr17	-	3239	14	NIC	ENSMUSG00000004865.17	novel	4804	15	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	554	junction_1	87.7263766478664	18	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGTGGTTTCTATGCTC	NA	False	NA	NA	False	NA	NA	NA	28841428	28808565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
10730	chr15	+	3412	22	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	11	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	93.5610196561205	4	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAACTATCAAAGCTGAA	NA	False	NA	NA	False	NA	NA	NA	57775645	57833449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57789185_57789352_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816379_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
10731	chr2	+	2894	18	NNC	ENSMUSG00000027469.17	novel	3654	18	NA	NA	-29	-636	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_8	276.669065177691	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGGTTTCAGTCACAG	2783	False	NA	NA	False	NA	NA	NA	152689972	152735938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152690218_152696840_152696923_152709106_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722997_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
10732	chr2	-	2331	4	FSM	ENSMUSG00000074731.4	ENSMUST00000109914.2	2734	4	4	399	4	-399	multi-exon	FALSE	canonical	3	25	junction_1	6.12825877028341	132	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATTGTTAGGGGCAGTC	NA	False	NA	NA	False	NA	NA	NA	150327007	150313309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_150315345_150316415_150316477_150316675_150316803_150326899
10733	chr1	-	2953	7	NNC	ENSMUSG00000026484.14	novel	3160	7	NA	NA	2	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	206.764291458226	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGTTATTAGATGTGTA	NA	False	NA	NA	False	NA	NA	NA	151376560	151345158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352099_151352673_151352784_151354287_151354377_151376469
10734	chr18	-	3100	21	NNC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	143.450993374044	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCTGGCCTTTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	34757643	34732881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34733186_34735713_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
10735	chr16	+	3990	8	NNC	ENSMUSG00000022849.6	novel	4680	9	NA	NA	2	-454	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	208.423137107262	2	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAATGTGTGAGAATGTT	5438	False	NA	NA	False	NA	NA	NA	35590778	35648393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_35590910_35607559_35607691_35622005_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
10736	chr19	-	2498	3	Antisense	novelGene_ENSMUSG00000011752.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTCTCCCGCCCCGCTTC	9931	False	NA	NA	False	NA	NA	NA	41907096	41900398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41900624_41904041_41905262_41906043
10737	chr17	-	2541	16	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_3	748.566244378026	1100	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5767	False	NA	NA	False	NA	NA	NA	33904366	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33869769_33869848_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
10740	chr15	-	2397	6	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-110	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1038.60494895798	125	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283905	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250622_81272535_81272602_81273851_81273925_81276465_81276524_81283685
10742	chr4	+	2602	13	NNC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	22801	26683	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	15	42	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCCGGCAAGAACCGCCC	NA	False	NA	79	True	NA	NA	NA	122752847	122779651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_122754011_122755726_122755871_122756193_122756306_122756401_122756539_122756692_122756881_122758374_122758551_122758961_122759068_122761276_122761366_122761448_122761590_122763486_122763564_122765188_122765290_122766123_122766244_122779603
10743	chr5	-	2270	2	Genic_Genomic	ENSMUSG00000080935.4	novel	1293	1	NA	NA	-56	987	multi-exon	FALSE	canonical	0	0	junction_1	0	104	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCCAGAAAAAAAAAAAAAA	1739	False	NA	NA	False	NA	NA	NA	138363870	138361534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_138362449_138362514
10744	chr10	-	2411	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	21	0	21	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	3	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTTGTGTGTTCTCTTTG	8766	False	NA	NA	False	NA	NA	NA	128401782	128393634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
10745	chr7	+	3797	7	NIC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	10	-273	intron_retention	FALSE	canonical	3	285	junction_1	13.9044357430761	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAACTGATTTAAGCTGA	NA	False	NA	NA	False	NA	NA	NA	12568973	12584231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12569092_12569373_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
10746	SIRV3	+	2374	3	FSM	SIRV3A	SIRV306	2373	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	1429	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1943	8292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4003_4081_6057
10747	chr3	-	1873	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30616	-2421	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCCCGAACGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	121251839	121220305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_121220476_121243595_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
10748	chr5	+	2542	3	Intergenic	novelGene_762	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	46.5	200	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGTGTGTTGAATTAC	NA	False	NA	NA	False	NA	NA	NA	104719519	104732486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104719638_104728353_104728462_104730170
10750	chr13	-	1518	3	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	1010	476	1010	-476	3prime_fragment	FALSE	canonical	3	476	junction_2	10	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34313327	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_34312515_34312854_34312966_34313228
10751	chr14	+	2975	14	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_3	214.971059012644	1211	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1778	False	NA	NA	False	NA	NA	NA	56905704	56934887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56906022_56909861_56910018_56911347_56912233_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
10752	chr16	+	1990	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGACTTTGTAGGGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	45973356	45975346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45973400_45975300
10753	chr11	-	1989	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	46	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1766.32353760747	1	24	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9009	False	NA	NA	False	NA	NA	NA	106679965	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106679068_106679281_106679833
10754	chr7	+	3256	15	NNC	ENSMUSG00000030523.19	novel	2928	14	NA	NA	-6	-24	intron_retention	FALSE	canonical	0	0	junction_11	382.651997277432	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGTACTTTATACAA	NA	False	NA	NA	False	NA	NA	NA	63835200	63874488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849019_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63861107_63867237_63867409_63868855_63868991_63869989_63870041_63873438
10755	chr13	-	3874	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18268	3074	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	33.7615165536147	7	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGTTGCCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	74739885	74724402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74727579_74728971_74729033_74729232_74729360_74730309_74730495_74731765_74731993_74739787
10756	chr14	-	2452	13	NIC	ENSMUSG00000021810.4	novel	3132	14	NA	NA	-4	-404	combination_of_known_splicesites	FALSE	canonical	3	31	junction_1	138.640497330326	32	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTGTTCAGTCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	20398122	20370323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20371020_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
10758	chr1	+	3187	13	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	275.294034725701	2	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	93406748	93437455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425064_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
10759	chr1	+	3331	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	-52	0	-36	0	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	146	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTCTCATTGTGACTTC	NA	False	NA	NA	False	NA	NA	NA	34889020	34918661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
10760	chrX	+	1854	10	NIC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	15	-13	intron_retention	FALSE	canonical	3	3907	junction_9	370.466206119456	31	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTAAAATGGAAGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	105230783	105247292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_105230922_105235612_105235664_105237961_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
10761	chr4	+	2282	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	254	373	112	-373	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	536	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGCACGGAGTCTCG	967	False	NA	NA	False	NA	NA	NA	129083806	129113027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
10762	chr17	-	2783	15	NIC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	43	-3	combination_of_known_splicesites	FALSE	canonical	1	8	junction_2	179.772815815191	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2227	False	NA	NA	False	NA	NA	NA	45744620	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45703231_45703918_45704132_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
10764	chr4	-	3264	19	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	1495	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	86.7789336955308	6	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTACCTGACTTGTCTTT	3045	False	NA	NA	False	NA	NA	NA	41121259	41114432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116055_41116604_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210
10765	chr2	-	1508	1	NIC	ENSMUSG00000026669.15	novel	4867	20	NA	NA	-931	3703	mono-exon	FALSE	NA	NA	NA	NA	NA	5	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCACCTTGGTCTATGC	NA	False	NA	NA	False	NA	NA	NA	5001636	5000128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_5000100_5001600
10766	chr2	-	3466	16	FSM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	-21	-4	-1	1	multi-exon	FALSE	canonical	3	257	junction_15	28.8510350286124	404	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCCGCTCTTGTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	155953880	155913760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
10767	chr11	-	3440	12	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	2240	junction_1	239.024187026065	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGACCGTTCTTTGGT	5908	False	NA	NA	False	NA	NA	NA	100510468	100473656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
10768	chr18	+	3879	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	21	1154	21	-1154	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	1612	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACATTCAAGCGATTT	NA	False	NA	NA	False	NA	NA	NA	67422276	67454388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
10771	chr13	+	2115	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	564.769198818317	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTTGGTATTGAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	3588158	3615820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615228_3615268
10772	chr11	+	3014	27	NIC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	5	-5	intron_retention	FALSE	canonical	0	0	junction_18	127.767424615586	10	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTATTTTTATATCT	NA	False	NA	NA	False	NA	NA	NA	29080752	29111675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
10773	chr11	+	4134	33	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	5	-10939	combination_of_known_junctions	FALSE	canonical	3	46	junction_32	22.0204982629822	6	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTAAGTCAAAGTACCAA	NA	False	NA	NA	False	NA	NA	NA	84070661	84191288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_84070753_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84183716_84183861_84184722_84184820_84185763_84185872_84190893_84190951_84191246
10774	chr3	-	6123	17	FSM	ENSMUSG00000038170.16	ENSMUST00000045243.15	6185	17	46	16	-32	-16	multi-exon	FALSE	canonical	3	63	junction_16	8.347903928532	83	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACTTAGTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	97675279	97646185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_97648762_97649804_97649918_97650480_97650619_97650801_97650919_97653987_97654080_97654832_97654915_97655080_97655252_97659124_97659320_97660331_97660512_97661441_97661580_97661747_97661862_97662754_97662914_97664199_97664413_97664519_97664613_97664847_97664968_97666114_97666247_97673789
10775	chr7	-	882	7	ISM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	169	12628	22	-2789	5prime_fragment	FALSE	canonical	3	2155	junction_6	209.985449231343	2	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGCATAGAGCAAGTGG	NA	False	NA	NA	False	NA	NA	NA	89629741	89616772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
10776	chr10	+	4431	23	NNC	ENSMUSG00000040033.17	novel	4394	24	NA	NA	-28	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	21.2602916254693	90	10	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGATACTGTGAGAGTGT	2333	False	NA	NA	False	NA	NA	NA	128106399	128128717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117589_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
10777	chr5	+	3473	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	4	2	1	-2	multi-exon	TRUE	canonical	3	48	junction_6	9.89356624586021	429	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGGTGGTGCATTCCTA	8081	False	NA	NA	False	NA	NA	NA	138170267	138178689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
10779	chr12	+	3176	22	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	81.4000228428768	478	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	17398456	17480096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17478805_17478926_17479082
10780	chr5	+	3733	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	24	-43	0	-2	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	1	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGTCTTATCTCTG	NA	False	NA	NA	False	NA	NA	NA	139186421	139235593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
10781	chrX	-	4134	12	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	66.9605780162064	15	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATCTTCTGTATCATATT	NA	False	NA	NA	False	NA	NA	NA	156381678	156330820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333190_156333818_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
10782	chr16	+	2958	26	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	50	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	359.107863461662	5	40	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTTTTGATTGCTAT	NA	False	NA	NA	False	NA	NA	NA	48251649	48451274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320545_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
10783	chr13	+	2921	4	Antisense	novelGene_ENSMUSG00000055228.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	255	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACGGAAGAACACGCCTCT	NA	False	NA	NA	False	NA	NA	NA	62600398	62614644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_62603006_62604498_62604561_62604745_62604874_62614520
10784	chr7	+	4343	28	NNC	ENSMUSG00000042055.14	novel	4550	29	NA	NA	26	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	45.0730545549509	86	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCCAAGACTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	129193667	129237451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235456_129236543
10785	chr5	+	1831	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	4777	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1447.35637780576	4	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAATATATTCTCGCTGT	5533	False	NA	NA	False	NA	NA	NA	77104400	77115346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110369_77112338_77112470_77114093_77114253_77114494_77114598_77114666
10786	chr14	+	4259	3	NNC	ENSMUSG00000021840.18	novel	4531	3	NA	NA	-456	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	122.5	3	123	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGGTTTCTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	47547948	47560549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47548571_47556868_47557492_47557535
10787	chr18	-	5160	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	11	-74	11	74	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	291	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGACCTTGTTTGTGTAA	NA	False	NA	NA	False	NA	NA	NA	33346904	33332333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
10788	chr15	-	4145	1	ISM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	43990	138	19479	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGACATTATGTCATT	NA	False	NA	NA	False	NA	NA	NA	103104253	103100108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_103100100_103104300
10789	chr19	-	3041	18	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	2188	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	384.88550402824	1	73	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGCACAGTTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	40574625	40538703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40538867_40539039_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570
10790	chr10	+	3333	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	71	junction_2	35.4241128130973	81	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9115	False	NA	NA	False	NA	NA	NA	41352331	41363026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
10794	chr11	+	4056	13	NIC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	655	junction_7	74.832962137164	7	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788915	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74789042_74789202_74789307_74790007_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
10795	chr16	-	2359	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	580	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	877.558200384298	2	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAAGTGTTGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	22084679	22064617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071533_22073190_22073321_22073733_22073868_22077614_22078012_22084490
10797	chr1	-	1425	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	65	897	8	6	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	9358	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTGTCATGTTTTAAAGT	NA	False	NA	NA	False	NA	NA	NA	161078724	161068578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
10798	chr11	-	2047	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	1273.75158096075	73	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676302_106677295_106677371_106677734_106677901_106679098
10800	chr5	+	2455	10	ISM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	-30	7777	-18	863	intron_retention	FALSE	canonical	3	24	junction_1	21.5274731161238	4	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGCTCGTGCCCATGAAC	NA	False	NA	NA	False	NA	NA	NA	112490930	112518503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_112491030_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320
10801	chr16	-	3214	17	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	-18	6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	341.383742107031	2	101	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTATCATTGTACCCAAA	8092	False	NA	NA	False	NA	NA	NA	4867745	4831766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832498_4832587_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
10802	chr12	-	2649	10	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-11	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	621.039530759059	13	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTCACTGTCTGACC	NA	False	NA	NA	False	NA	NA	NA	108860074	108825960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108832089_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
10803	chr2	-	3968	17	NIC	ENSMUSG00000026669.15	novel	4867	20	NA	NA	1621	-1	intron_retention	FALSE	canonical	3	627	junction_5	64.4883407582332	1	122	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCTGTGAAACGTGACT	NA	False	NA	NA	False	NA	NA	NA	5015534	4995535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5012244_5013290_5013624_5015499
10804	chr4	-	3149	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	-5	-3	-5	3	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	4013	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGGTTGTTAAATAT	NA	False	NA	NA	False	NA	NA	NA	108690816	108671488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
10806	chr11	+	2918	10	NIC	ENSMUSG00000059248.14	novel	647	4	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	178.114819397177	1119	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117198974	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_117199098_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
10807	chr12	+	4241	9	FSM	ENSMUSG00000021254.10	ENSMUST00000071106.6	3829	9	0	-412	0	-2	multi-exon	FALSE	canonical	3	43	junction_8	8.71421252896669	86	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTGCTTATGATTGAGG	NA	False	NA	NA	False	NA	NA	NA	86288648	86338556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86335573
10808	chr9	-	1539	16	Antisense	novelGene_ENSMUSG00000032604.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	63	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTTTGGGCCTCATCTG	NA	False	NA	NA	False	NA	NA	NA	108390971	108385258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108385394_108385576_108385729_108386074_108386186_108386347_108386428_108386642_108386702_108387290_108387354_108387490_108387546_108388335_108388407_108388526_108388614_108388726_108388816_108389679_108389778_108389893_108389976_108390056_108390166_108390262_108390408_108390494_108390622_108390895
10809	chr17	-	7312	47	FSM	ENSMUSG00000023977.16	ENSMUST00000113337.10	7633	47	301	20	260	-20	multi-exon	FALSE	canonical	3	27	junction_37	23.6319046780947	114	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGCTTTAGTGTTGACA	NA	False	NA	NA	False	NA	NA	NA	47321145	47239240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47241427_47243378_47243481_47245000_47245172_47246359_47246438_47249575_47249633_47250227_47250337_47251929_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291414_47291514_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
10810	chr5	-	2520	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	48	1	48	-1	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	297	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCCTGGGTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	24782417	24770343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
10812	chr11	-	3488	6	Antisense	novelGene_ENSMUSG00000038366.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	740	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGTAGCAGCCCCCAGA	NA	False	NA	NA	False	NA	NA	NA	97729591	97697407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_97697746_97706521_97706606_97715664_97715774_97724369_97724528_97724908_97725012_97726895
10813	chr17	+	2745	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	696.657779847625	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4894	False	NA	NA	False	NA	NA	NA	87979990	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987321_87987381_87987507_87989958_87990110_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88028310_88028487_88030758
10814	chr1	-	2096	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2065.09556376939	5	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGACTTAATACTT	NA	False	NA	NA	False	NA	NA	NA	86287099	86278219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278394_86279143_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
10815	chr18	-	2586	15	NIC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	-2	1	intron_retention	FALSE	canonical	3	792	junction_3	62.951714570351	158	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACTTGATTATACACTT	57	True	NA	NA	False	NA	NA	NA	10030024	9995592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
10816	chr4	-	2410	14	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	529.010598209291	26	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	8809	False	NA	NA	False	NA	NA	NA	129436505	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416374_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
10817	chr2	-	3779	33	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.173992636338438	1	86	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGTGTAGCCACGCCTAA	NA	False	NA	NA	False	NA	NA	NA	180997822	180961549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964685_180965152_180965236_180965474_180965536_180970393_180970472_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981033_180982286_180982386_180983321_180983371_180988621_180988702_180988809_180988886_180990965_180991101_180991255_180991397_180991681_180991772_180991916_180991990_180992422_180992502_180992836_180992967_180993048_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180996233_180996798_180996917_180997100_180997345_180997441_180997604_180997714
10818	chr11	-	3020	19	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-1	1	intron_retention	FALSE	canonical	3	632	junction_6	79.7660158460395	750	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTCTGATAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	106146631	106139966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
10819	chr11	-	3016	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	71	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	261.421985581654	3	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88755341	88721617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88735991_88736661_88736692_88755222
10820	chr9	-	3218	21	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6360	37231	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	5017	False	NA	NA	False	NA	NA	NA	21316656	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309428_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21314431_21314798_21315355_21315486_21315989_21316076_21316263
10822	chr1	+	3108	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	25	134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	322.959983653806	11	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTGACCAGACTTTAGT	NA	False	NA	NA	False	NA	NA	NA	85992387	86067007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054287_86055954_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
10823	chr17	+	2618	14	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-23	0	intron_retention	FALSE	non_canonical	0	0	junction_10	350.689903310637	4	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165725	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179786_21180727_21180902_21181214_21181270_21181846_21182002_21182835_21182979_21185500_21185593_21185716
10824	chr2	+	2419	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-3	intron_retention	FALSE	canonical	3	433	junction_10	614.848566721921	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATAGTATGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
10826	chr5	+	1947	12	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1297.59197193102	6	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGCTACTGGATCATT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129868985_129871459_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
10827	chr11	+	2340	11	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	15913	-3957	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3271.63894860053	1	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCATCTGGCAATGTAG	NA	False	NA	NA	False	NA	NA	NA	55376456	55391707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55376532_55378336_55378387_55379842_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389393_55390404
10828	chr14	-	2859	14	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-20	0	intron_retention	FALSE	canonical	3	108	junction_10	226.335850363488	16	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741021	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764
10829	chr11	+	735	4	ISM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	31838	2801	31599	-2801	3prime_fragment	FALSE	canonical	3	969	junction_2	19.5959179422654	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTAAATATCTTTCATG	NA	False	NA	NA	False	NA	NA	NA	102951009	102956937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102951075_102954633_102954802_102955555_102955694_102956573
10830	chr12	+	3143	10	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	0	-130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	168.304911425295	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTACTTGTATTAAAGTT	NA	False	NA	NA	False	NA	NA	NA	59113728	59120654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211_59118334_59118486
10831	chr14	-	2527	10	NNC	ENSMUSG00000060373.16	novel	2617	9	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1237.58807642672	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATATGCTGTTAGAAGC	8750	False	NA	NA	False	NA	NA	NA	52341460	52311009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312404_52312483_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
10832	chr17	-	3047	24	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	198.823267932744	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	NA	False	NA	NA	NA	36280647	36267710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268005_36268112_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
10833	chr15	-	3271	13	NIC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_12	706.153208706628	1	103	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	NA	False	NA	NA	NA	81284270	81247869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685_81283889_81283989
10834	chr2	+	3786	18	FSM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	-137	-1	29	0	multi-exon	FALSE	canonical	3	582	junction_10	50.5976051514182	513	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	522	False	NA	NA	False	NA	NA	NA	31462691	31507532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
10835	chr10	-	2081	7	NNC	ENSMUSG00000035835.15	novel	3063	9	NA	NA	2851	813	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTTGTTCTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	79700264	79695495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79695544_79695612_79695791_79696659_79696805_79698246_79698375_79698485_79698704_79698811_79698890_79698978
10837	chr14	+	3512	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	349	junction_12	57.9852946875326	2	94	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56640147	56726892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
10838	chr6	-	2740	4	NIC	ENSMUSG00000004980.17	novel	1518	10	NA	NA	-101	8	intron_retention	FALSE	canonical	3	933	junction_2	2977.4777916888	2	93	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTTGTATCCAAATTAC	NA	False	NA	NA	False	NA	NA	NA	51443318	51438116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440474_51441068_51441192_51442158_51442222_51443121
10839	chr17	+	2332	4	Intergenic	novelGene_45	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	89.8455464796237	816	11	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCCCAAGTATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	17399584	17426649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17422911_17423084_17423325_17423387_17424679
10840	chr11	-	2189	11	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1693.89461301464	2	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673629_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106677323_106677371_106677734_106677901_106679098
10841	chr13	-	2334	13	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-3	4	intron_retention	FALSE	canonical	3	31	junction_3	2562.53518539529	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTATTTTTGGTGGTCTT	4748	False	NA	NA	False	NA	NA	NA	58550333	58539769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58548232_58550206
10842	chr19	-	2051	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	881.574727405454	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTGCTACGGTCTCCA	3764	False	NA	NA	False	NA	NA	NA	7017334	6998077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999047_6999094_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
10843	chr11	-	5188	36	NNC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	430.623199086901	1	250	25	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGCCATCCATTCCTCT	NA	False	NA	NA	False	NA	NA	NA	98915013	98883777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886202_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890159_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907259_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
10844	chr16	+	3398	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	336.576555597353	1	50	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTACTGTGTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	13598608	13632701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616583_13617795_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631715_13631786
10846	chr7	+	1741	3	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATCGCTGGGTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	110670510	110673409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673243
10848	chr6	-	3568	20	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-3	0	intron_retention	FALSE	non_canonical	0	0	junction_11	238.372773083187	2	109	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	10	True	NA	NA	False	NA	NA	NA	29609615	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565273_29572584_29572693_29575004_29575148_29578458_29578599_29579515_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
10849	chr13	+	4289	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	26	7	6	-7	multi-exon	FALSE	canonical	0	0	junction_3	132.701770900015	625	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTATAAAACCAGCTGT	NA	False	NA	NA	False	NA	NA	NA	54769622	54811869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
10850	chr8	-	2219	15	FSM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	-88	0	-31	0	multi-exon	FALSE	canonical	3	198	junction_14	463.92143951408	3224	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737986	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
10851	chr13	+	4760	20	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	-8	-8	intron_retention	FALSE	canonical	2	9	junction_7	69.7287184940716	116	86	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCATACCGTCTACTG	NA	False	NA	NA	False	NA	NA	NA	35059478	35090039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077299_35077406_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35087257_35087512_35087586_35088026_35088073_35089865
10854	chr11	-	4260	6	NNC	ENSMUSG00000020413.12	novel	4640	8	NA	NA	3	-6	intron_retention	FALSE	canonical	3	12	junction_5	75.3482581085986	32	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTTGGAATTCATTT	NA	False	NA	NA	False	NA	NA	NA	8961125	8943142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957602_8961058
10855	chr12	+	4561	4	NIC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	22	3	intron_retention	FALSE	canonical	3	167	junction_1	10.3387082795139	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTGTGCTTTCGTGTG	NA	False	NA	NA	False	NA	NA	NA	30634446	30641217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_30634562_30635468_30637254_30638472_30638567_30638650
10857	chrX	-	2771	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-6	-14	intron_retention	FALSE	canonical	0	0	junction_5	653.957070456463	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGCTACTTTTACAGTTC	NA	False	NA	NA	False	NA	NA	NA	158921358	158905218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910291_158910359_158910568_158910719_158911456_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916224_158921251
10858	chr15	-	1588	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	94	2735	94	866	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAAGGAAGGTGATTCA	249	False	NA	NA	False	NA	NA	NA	37007552	37000005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
10859	chr4	-	2485	14	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	-1	-8	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	286.940997584302	30	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122779654	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122753693_122753772_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
10860	chr4	-	3838	12	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_7	237.221554913761	414	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6789	False	NA	NA	False	NA	NA	NA	126096438	126057874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
10862	chr17	-	2728	7	NNC	ENSMUSG00000015120.16	novel	890	7	NA	NA	2	1406	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	2269.94292635055	673	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	3822	False	NA	NA	False	NA	NA	NA	25493282	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484378_25487514_25487588_25488165_25488250_25488376_25488454_25493135
10863	chr17	-	4181	2	Antisense	novelGene_ENSMUSG00000036036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGCCCAATGCCTGAA	NA	False	NA	NA	False	NA	NA	NA	37320815	37313410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_37317086_37320309
10864	chr15	-	2622	14	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	7	-6	intron_retention	FALSE	canonical	3	1461	junction_9	116.924443311854	7	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTTCGTCCTGTGCT	2752	False	NA	NA	False	NA	NA	NA	77855006	77843203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77852422_77852656_77852790_77854882
10865	chr2	+	2714	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-28	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	536.661846510445	2	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGACTTTGGAAACGA	NA	False	NA	NA	False	NA	NA	NA	84867549	84877436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871371_84871488_84871557_84871757_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
10867	chr12	+	5111	14	NIC	ENSMUSG00000021177.17	novel	2036	16	NA	NA	1	2	intron_retention	FALSE	canonical	3	362	junction_1	47.3861138624202	49	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTACAGGCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	99850776	99921475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99881817_99901263_99901367_99911498_99911608_99921221
10868	SIRV8002	+	3084	2	Genic_Genomic	SIRV8002A	novel	8000	1	NA	NA	0	-4124	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAAAAACGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	0	3876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV8002_+_2881_3672
10870	chr14	+	2841	15	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.029531103601	1	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1814	False	NA	NA	False	NA	NA	NA	56905740	56934887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56905889_56905950_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
10872	chr2	-	1590	5	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-10778	1637	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	243.353138463427	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTACATAAGCCCCTAT	NA	False	NA	NA	False	NA	NA	NA	176969607	176954809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176954884_176956247_176957402_176958459_176958604_176958795_176958923_176969516
10873	chr10	+	3155	13	NIC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	-9	-7	intron_retention	FALSE	canonical	2	24	junction_2	621.966834369451	12	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATACACTGGTGATATT	NA	False	NA	NA	False	NA	NA	NA	111309132	111334004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111309213_111317140_111317178_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
10874	chr15	+	3298	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	130	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCGCAGACACGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	36770533	36793844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793726
10875	chr19	-	2402	20	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	360.775403771874	14	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5092	False	NA	NA	False	NA	NA	NA	53027039	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52998486_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
10876	chr2	-	3928	8	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-4	-215	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	60.8598255612595	605	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGGATTAAAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	29677676	29664910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29668116_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
10878	chr9	+	2015	6	FSM	ENSMUSG00000007815.14	ENSMUST00000194701.6	852	6	37	-1200	5	0	multi-exon	FALSE	canonical	3	21	junction_1	597.472543302201	41	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108184032	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108184276_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
10879	chr9	+	3440	12	Antisense	novelGene_ENSMUSG00000064145.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.287479787288034	1	56	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTTCATTGCTATCTGAC	210	False	NA	NA	False	NA	NA	NA	108480156	108521430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108482355_108482533_108482619_108484489_108484558_108485109_108485252_108485800_108485968_108487095_108487147_108488831_108488950_108492223_108492348_108493878_108494026_108494568_108494631_108497253_108497328_108521226
10880	chr4	+	5539	8	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	88	junction_1	50.3550658132945	13	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8257	False	NA	NA	False	NA	NA	NA	156194440	156211720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
10881	chr9	+	5099	28	FSM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	125	0	109	0	multi-exon	FALSE	canonical	3	379	junction_13	76.5309229485215	386	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	1078	False	NA	NA	False	NA	NA	NA	103182538	103227627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840_103203053_103205605_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
10882	chr15	-	2785	11	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-126	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	772.836341019235	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGATCTTGACCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	81283921	81247874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250589_81255740_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
10883	chrX	-	2343	10	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-6	-37	intron_retention	FALSE	canonical	0	0	junction_9	590.231488381079	2	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAACGAATTAAACTTGTT	NA	False	NA	NA	False	NA	NA	NA	158921358	158905241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906527_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915299_158921251
10884	chr10	-	2354	5	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	510	-2448	intron_retention	FALSE	canonical	3	1936	junction_1	133.44170075355	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGTGTTGTAATGTAAT	NA	False	NA	NA	False	NA	NA	NA	116898770	116893251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116893824_116894002_116894104_116896552_116897316_116897409_116897487_116897929
10885	chr8	-	3560	13	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	22	-5	intron_retention	FALSE	canonical	3	999	junction_6	168.296592525088	17	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGTCAGCAGTCATGCA	7661	False	NA	NA	False	NA	NA	NA	41827650	41793702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
10886	chr7	-	3451	29	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	243.165442441888	6	90	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28038171	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015356_28015448_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025452_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28038119
10888	chr7	+	3484	16	FSM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	95	1048	23	-1048	multi-exon	FALSE	canonical	3	662	junction_8	67.7342519622745	1046	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCAAAGCTCGAATTGT	NA	False	NA	NA	False	NA	NA	NA	101312934	101438327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
10889	chr2	+	3911	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	201	490	-28	63	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	1321	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACTTCAAAAGACTTCTC	NA	False	NA	NA	False	NA	NA	NA	118644684	118667687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
10890	chr6	-	1748	6	FSM	ENSMUSG00000030057.16	ENSMUST00000113617.3	952	6	12	-808	11	3	multi-exon	FALSE	canonical	3	59	junction_4	4719.63282470151	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828030	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87825996_87826092_87827885
10891	chr3	-	4703	9	FSM	ENSMUSG00000019338.14	ENSMUST00000019482.8	4632	9	36	-107	16	-5	multi-exon	FALSE	canonical	1	6	junction_8	42.3657807080195	176	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94922513	94913905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94922421
10892	chr9	-	3322	20	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6360	37229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14	65	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGCCACGCGGT	5017	False	NA	NA	False	NA	NA	NA	21316656	21279308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299818_21300049_21300600_21300778_21303590_21303738_21305010_21305097_21305488_21305586_21306125_21306236_21306663_21306761_21307313_21307425_21307509_21307624_21308763_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311314_21314433_21314721_21315357_21315486_21315989
10893	chr10	+	2882	11	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	-32	4	intron_retention	FALSE	canonical	3	604	junction_7	33.9081111240364	43	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAGTTTCAAAATATTCT	9165	False	NA	NA	False	NA	NA	NA	127102204	127117823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127114092_127114185_127114278_127117269
10894	chr15	-	4666	20	Antisense	novelGene_ENSMUSG00000115017.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCACTCCTCCTCAGCGG	NA	False	NA	NA	False	NA	NA	NA	12185606	12117941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12118033_12118323_12118420_12136476_12136763_12137988_12138134_12140517_12140745_12146238_12146481_12149611_12149806_12150258_12150550_12152885_12153088_12154535_12154650_12156346_12156493_12159682_12159848_12160570_12160774_12162196_12162349_12166226_12166371_12170899_12170998_12171842_12171940_12180706_12180818_12180926_12181024_12184041
10895	chr11	-	3503	16	NNC	ENSMUSG00000020451.18	novel	3711	16	NA	NA	-8	-205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	80.0689702693871	102	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGTCTTTGGCCACTTT	9847	False	NA	NA	False	NA	NA	NA	3321343	3294460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3311782_3311826_3320963
10896	chr1	-	2178	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2592.10226987957	52	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGACTTAATACTT	NA	False	NA	NA	False	NA	NA	NA	86287094	86278219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278401_86278729_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280850_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
10898	chr18	+	2914	20	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-46	0	intron_retention	FALSE	non_canonical	0	0	junction_7	253.882353280962	2	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6203	False	NA	NA	False	NA	NA	NA	34758013	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761136_34761197_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
10899	chr9	+	3291	22	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	84	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTGTGCGCCCGCCCGGC	NA	False	NA	NA	False	NA	NA	NA	61824565	61854049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826252_61826891_61826976_61827156_61827239_61828299_61828537_61831182_61831503_61831915_61832093_61832250_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61840510_61840551_61842659_61842832_61843943_61844055_61844361_61844499_61844709_61844827_61853861
10900	chr10	+	2626	11	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	1	-188	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	464.820406178558	1	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACACTCCTGTCCTGCCC	NA	False	NA	NA	False	NA	NA	NA	128173679	128198160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188677_128188928_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
10903	chrX	-	2491	7	NIC	ENSMUSG00000025151.17	novel	2884	12	NA	NA	-12	363	intron_retention	FALSE	canonical	3	1240	junction_4	105.552119827126	4	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGTTTGTAAAGCAGAAGT	NA	False	NA	NA	False	NA	NA	NA	93585621	93580917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_93581191_93581281_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
10905	chr9	-	2920	6	FSM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	-47	-63	-45	62	multi-exon	FALSE	canonical	3	41	junction_5	303.486671865504	2538	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTATTTTATTTT	-3	True	NA	NA	False	NA	NA	NA	4309516	4294730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309287
10906	chr14	-	4710	31	FSM	ENSMUSG00000025280.9	ENSMUST00000026322.9	4687	31	-30	7	-24	2	multi-exon	FALSE	canonical	3	105	junction_23	15.9947560851118	208	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGGGATATTAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	24537150	24498770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_24499291_24500762_24500896_24502260_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521016_24521805_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
10907	chr9	-	3619	10	Antisense	novelGene_ENSMUSG00000025651.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.88561808316413	3	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGAGCCGCGCTGCGCATG	NA	False	NA	NA	False	NA	NA	NA	108778522	108765768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108765855_108766082_108766224_108771150_108771237_108773109_108773240_108773755_108773954_108774424_108776547_108776664_108776826_108776922_108777017_108777616_108777699_108778003
10908	chr14	+	3651	34	NNC	ENSMUSG00000021843.18	novel	3846	38	NA	NA	145	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	176.822993364983	1	69	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	2529	False	NA	NA	False	NA	NA	NA	47901388	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938557_47943886_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
10909	chr14	-	3265	13	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-1	-3	intron_retention	FALSE	non_canonical	0	0	junction_10	261.374677851972	27	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATGTGTTTAAGATTTAT	NA	False	NA	NA	False	NA	NA	NA	30740971	30734393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738779_30738865_30739013_30739125_30739232
10910	chr2	-	3481	18	NIC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	-31	-7	combination_of_known_junctions	FALSE	canonical	3	28	junction_16	589.928164062647	4	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGAATGAATGAGTACTG	NA	False	NA	NA	False	NA	NA	NA	103627349	103597458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103618482_103618549_103627075
10912	chr2	-	2828	19	NNC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	-25	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	144.893500693474	877	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGTGCCCAGTAAACAG	NA	False	NA	NA	False	NA	NA	NA	126975847	126945745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975318_126975496_126975768
10914	chr14	-	1383	5	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAAGAGCTTTTGTCAA	NA	False	NA	NA	False	NA	NA	NA	63380586	63375480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63375566_63375797_63375942_63376445_63376561_63379178_63379311_63379679
10916	chr13	+	2302	6	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	-2848	476	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	29.982661656364	1	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTGTTTAAAACCAGTC	NA	False	NA	NA	False	NA	NA	NA	62005781	62009965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62005910_62006094_62006156_62007517_62008402_62008485_62008663_62008746_62009025_62009191
10917	chr13	+	4545	18	NNC	ENSMUSG00000038518.16	novel	5997	18	NA	NA	5	183	intron_retention	FALSE	canonical	0	0	junction_16	192.425710286434	1	74	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCATTTTTGAAGATGGT	NA	False	NA	NA	False	NA	NA	NA	44884850	45073767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068428_45069892_45070001_45073275
10918	chr10	+	2651	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-8	-150	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	443.8353689272	1	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGTGTTTGTATGGAA	NA	False	NA	NA	False	NA	NA	NA	128173670	128198198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194232_128194288_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
10919	chr11	-	4163	2	ISM	ENSMUSG00000025140.16	ENSMUST00000141254.8	840	7	-73	-1793	-12	-15	intron_retention	FALSE	canonical	3	1022	junction_1	0	2	88	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	120534542	120530256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120532132_120532254
10921	chr14	+	4379	41	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	-16	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	198.118373706226	1	124	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTCACTCTGATTGTC	NA	False	NA	NA	False	NA	NA	NA	47886834	47974016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887417_47887521_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
10922	chr6	-	2356	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	616.139955241051	67	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTGTTTGCCTTTTATT	8956	False	NA	NA	False	NA	NA	NA	47790298	47773076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773155_47773244_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
10923	chr2	+	2711	8	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	23	-7	intron_retention	FALSE	canonical	3	1115	junction_3	90.8358016265771	60	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAACTTGTGTGTTTATT	8592	False	NA	NA	False	NA	NA	NA	72306525	72317230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72314361_72314942_72315093_72315519_72315657_72316063
10924	chr17	+	2771	15	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	0	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	610.368460983417	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCTGAATTTTATAAATAAA	4892	False	NA	NA	False	NA	NA	NA	87979988	88031106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003920_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88028310_88028487_88030758
10925	chr2	-	3593	21	NNC	ENSMUSG00000006800.15	novel	3927	21	NA	NA	143	2	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_20	202.709613733538	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTATCTTGGGACTTTT	NA	False	NA	NA	False	NA	NA	NA	165997062	165915837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974713_165996997
10926	chr10	+	2432	10	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	-2	-17	intron_retention	FALSE	non_canonical	0	0	junction_7	500.961100976271	2	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACACCTGTGTCTTACA	1559	False	NA	NA	False	NA	NA	NA	79690436	79700249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695765_79698595_79698704_79698811_79698890_79698978
10927	chr11	+	3882	23	NNC	ENSMUSG00000020898.19	novel	4164	23	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	102.764916674776	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACCTGTGTTCATCTCTG	5300	False	NA	NA	False	NA	NA	NA	68906950	68927295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926917
10929	chr9	+	2388	13	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	494.200947377571	105	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGAGTGCAGTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	25163806	25219860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199554_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
10930	chr15	-	2891	3	ISM	ENSMUSG00000037465.11	ENSMUST00000226363.2	2917	4	1233	-1	990	1	3prime_fragment	FALSE	canonical	3	2013	junction_1	168.5	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAGTGAGTCTGTTGTA	2611	False	NA	NA	False	NA	NA	NA	38298093	38294658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_38296409_38296858_38297772_38297865
10931	chr5	-	1927	14	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10391	-7973	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGTGCCCACAGAGCACCT	4162	False	NA	NA	False	NA	NA	NA	129874904	129864417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129869004_129869080_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
10935	chr1	-	2131	16	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_15	501.503588111679	17	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	128345096	128291443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344932
10936	chr10	-	2144	9	NIC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	2576	-6	intron_retention	FALSE	canonical	3	1884	junction_7	87.2295821381715	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCTCACTGTTGTGTGT	9999	False	NA	NA	False	NA	NA	NA	128399162	128393642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128394841_128394930_128394985_128395098_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092
10937	chr4	-	3679	19	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	449.488749361393	1	127	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080455	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059116_135059468_135059550_135065114_135065390_135065872_135065898_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
10938	chr16	-	3574	15	NIC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	-18	9	intron_retention	FALSE	canonical	3	303	junction_5	229.349223514122	3	95	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCATTGTACCCAAATGC	8092	False	NA	NA	False	NA	NA	NA	4867745	4831763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4833467_4836263_4836389_4836703_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
10939	chr19	+	2951	12	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	2822	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	364.064270958343	3	88	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAATGTGTTCAGAGTTA	2891	False	NA	NA	False	NA	NA	NA	46067314	46073963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070095_46070733_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450_46073391_46073655
10940	chrX	+	3111	22	NIC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	-15	1	combination_of_known_splicesites	FALSE	canonical	3	25	junction_4	100.321998591339	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTCATGTCCTAGTATG	540	False	NA	NA	False	NA	NA	NA	20484006	20517141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
10941	chrX	-	3637	14	NNC	ENSMUSG00000037217.16	novel	3261	13	NA	NA	60389	11939	intron_retention	FALSE	non_canonical	0	0	junction_1	0	412	12	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCCTCTCAGTCCACC	NA	False	NA	-17	True	NA	NA	NA	20726768	20714810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_20714857_20716163_20716320_20716481_20716587_20717703_20717814_20717900_20718052_20718168_20719699_20719881_20720054_20720149_20720353_20723848_20724027_20724114_20724168_20724636_20724751_20724979_20725108_20725918_20726054_20726212
10942	chrX	-	3221	11	NIC	ENSMUSG00000025151.17	novel	2884	12	NA	NA	-22	-3	intron_retention	FALSE	canonical	3	1240	junction_8	164.27967007515	2	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAATTAAGTGTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	93585631	93579084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_93579284_93579465_93579852_93580479_93580963_93581147_93581191_93581281_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
10943	chr1	+	4765	26	NNC	ENSMUSG00000026288.15	novel	4937	27	NA	NA	60	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	209.402937897251	1	158	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGGCCTCCTGACTGT	NA	False	NA	NA	False	NA	NA	NA	87548180	87648222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87548400_87593096_87593260_87595610_87595786_87597363_87597505_87604004_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625074_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637415_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
10944	chr9	-	3494	17	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	8580	False	NA	NA	False	NA	NA	NA	21313093	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299093_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306237_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21311747
10945	chr8	+	2332	15	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	464	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	439.806358131691	2	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	75836715	75854316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836845_75836927_75837024_75839210_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
10946	chr4	-	3763	13	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304.431254783225	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACGGACTGTGTTTGTTG	6764	False	NA	NA	False	NA	NA	NA	126096463	126057878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126059221_126059316_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
10947	chr1	-	1924	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-18	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	2064.26858545573	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287104	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86284715_86285852_86285946_86286927
10949	chr17	+	3649	13	NNC	ENSMUSG00000023921.10	novel	3674	13	NA	NA	47	-9	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	97.0324974199652	368	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAATACGATGTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	41245622	41272870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254666_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
10950	chr6	+	3438	20	NNC	ENSMUSG00000029771.13	novel	403	2	NA	NA	-321	44301	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	79	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTTACGTCATTGCTAT	3756	False	NA	NA	False	NA	NA	NA	29540823	29586171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29541865_29543260_29543364_29551854_29551964_29554793_29554964_29555153_29555312_29556977_29557071_29558749_29558874_29560083_29560214_29561351_29561420_29562856_29562934_29565169_29565261_29565661_29565855_29568852_29568992_29571033_29571127_29572584_29572692_29575003_29575154_29578463_29578603_29579520_29579697_29582166_29582309_29586036
10951	chr11	-	2760	16	ISM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	6128	2220	-8	-36	3prime_fragment	FALSE	canonical	3	1486	junction_1	161.359915165515	1	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTGTTTGAATAAACAGT	NA	False	NA	NA	False	NA	NA	NA	75233022	75191211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969
10952	chr5	-	2462	13	NNC	ENSMUSG00000029405.17	novel	3026	12	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	587.052359012569	47	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	NA	False	NA	NA	NA	92231541	92201575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202082_92202310_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
10953	chr9	-	3711	8	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	159.83818347929	1	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTCTGTAATTTTGC	2209	False	NA	NA	False	NA	NA	NA	58157011	58125823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58127853_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142241_58154257_58154722_58156943
10954	chr4	+	5247	12	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-2	-12	intron_retention	FALSE	canonical	3	27	junction_7	90.9128181054122	1	103	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTTTGCTTTCTTGT	-7	True	NA	NA	False	NA	NA	NA	11558939	11615793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601632_11601759_11604865_11605006_11606045_11606337_11609293_11612439_11615442
10955	chr4	+	4451	24	FSM	ENSMUSG00000045751.17	ENSMUST00000108222.9	4478	24	18	9	4	-5	multi-exon	FALSE	canonical	3	129	junction_15	74.8650203134992	150	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAAAACAGCTCTCTGT	2	True	NA	NA	False	NA	NA	NA	24496468	24602941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
10956	chr17	-	2127	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	1388	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906525	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
10957	chr11	-	1937	14	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	49	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	695.143423113695	13	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	5250	False	NA	NA	False	NA	NA	NA	88846242	88814847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815368_88815476_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
10958	chr16	+	3564	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	341.120948829156	2	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTACTGTGTTGAATTTTA	NA	False	NA	NA	False	NA	NA	NA	13598571	13632703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606736_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629484_13630990
10959	chr5	-	3595	4	NNC	ENSMUSG00000109771.2	novel	3523	4	NA	NA	-5459	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	24.3857882108958	44	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGTTCCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	110234213	110224000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110227247_110228349_110228411_110228603_110228731_110234052
10960	chr14	+	4286	23	NNC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	-4	-15	intron_retention	FALSE	canonical	0	0	junction_3	110.015147341755	1	80	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATGTAACCAGTATCC	NA	False	NA	NA	False	NA	NA	NA	20724386	20744903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726226_20729595_20729689_20733155_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
10961	chr5	-	3624	23	NNC	ENSMUSG00000029415.5	novel	5020	22	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.1648043138411	45	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCCTTGTGAAATCTCTC	NA	False	NA	NA	False	NA	NA	NA	92457839	92431871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92432444_92433792_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
10962	chr12	-	2308	25	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-18	-2343	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	445.97236928611	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTATATTTTCATGAAG	NA	False	NA	NA	False	NA	NA	NA	13299182	13269316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270406_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
10963	chr4	+	3029	17	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	254.840628812892	2	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTGGTATGGTTTGGG	5279	False	NA	NA	False	NA	NA	NA	108436657	108472028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436773_108445872_108445979_108450489_108450669_108452525_108452842_108454326_108454676_108456516_108456622_108457127_108457282_108457674_108457821_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
10965	chrX	+	3416	21	ISM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	17887	9651	41	-4972	internal_fragment	FALSE	canonical	3	964	junction_19	92.4292161602596	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGTCTGTTCTAAATCT	NA	False	NA	NA	False	NA	NA	NA	143118905	143147795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860
10967	chr14	-	2587	9	NNC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-84	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	213.658277103884	1495	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTTGGTGATAAATTGA	NA	False	NA	NA	False	NA	NA	NA	40688848	40628403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656114_40656243_40688732
10968	chr8	+	4963	4	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-6	-7	intron_retention	FALSE	canonical	3	51	junction_2	7.11805216802087	291	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAACCTGCTGGCTCCC	NA	False	NA	NA	False	NA	NA	NA	22550730	22561636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22550787_22551901_22552137_22555015_22555948_22557896
10969	chr13	+	2552	23	FSM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	104	1137	5	33	multi-exon	FALSE	canonical	3	649	junction_6	70.4314478267713	911	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGCTGCCC	1314	False	NA	NA	False	NA	NA	NA	59733212	59782599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
10970	chr6	-	2453	7	NNC	ENSMUSG00000039985.15	novel	2785	7	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847872	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823928_148824056_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
10971	chr9	-	5298	4	NNC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	-10	-11	intron_retention	FALSE	non_canonical	0	0	junction_1	128.74867852612	6	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGTGAAGAGCAGTCA	9438	False	NA	NA	False	NA	NA	NA	57459559	57451549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57452129_57452477_57452687_57453676_57458057_57459429
10972	chr14	+	1990	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	21	1272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2988.54724573663	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359983	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63362642_63362751_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
10973	chrX	-	4609	28	Antisense	novelGene_ENSMUSG00000031010.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCATCAGGGCCCTCCC	7410	False	NA	NA	False	NA	NA	NA	13006755	12937718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_12937971_12960160_12960415_12964686_12964833_12966669_12966750_12969564_12969680_12970821_12971041_12973303_12973420_12973902_12974153_12974226_12974366_12976308_12976466_12977328_12977434_12979796_12980004_12980744_12980882_12982860_12982995_12987669_12987755_12989401_12989750_12990806_12990901_12991632_12991844_12994443_12994688_12995215_12995365_12996463_12996584_12997963_12998095_12998306_12998587_13001181_13001307_13002681_13002808_13003844_13004014_13006347_13006456_13006647
10974	chr2	+	3753	14	NIC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	-41	-949	intron_retention	FALSE	canonical	3	458	junction_7	47.4300481494128	8	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGATATGTGGTTACC	NA	False	NA	NA	False	NA	NA	NA	29825493	29849434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29825611_29826021_29826250_29828506_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
10975	chr4	-	3005	14	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	7	-9	combination_of_known_splicesites	FALSE	canonical	2	18	junction_3	206.903316185412	844	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGAAGTTCATGAGCT	-22	True	NA	NA	False	NA	NA	NA	48473452	48430866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
10976	chr15	+	6650	31	NIC	ENSMUSG00000058290.5	novel	6658	31	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	69.6461213724226	292	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTGAGAGTTGAAGCTA	396	False	NA	NA	False	NA	NA	NA	102204737	102232792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102204851_102205165_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
10977	chr7	-	3405	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	132	303	-32	-303	multi-exon	TRUE	canonical	3	346	junction_6	24.644133852366	1114	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTAAACTAGCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	109585526	109571696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
10978	chr3	-	3591	15	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-1	-4	intron_retention	FALSE	canonical	1	178	junction_5	109.98339392279	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGGCTGTGCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	95662151	95647291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95655453_95655798_95655946_95657650_95657730_95658012_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
10979	chr8	+	3179	12	NIC	ENSMUSG00000001482.16	novel	589	4	NA	NA	88	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	80.3485177058087	8	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGAAATGTTACTAGTC	NA	False	NA	NA	False	NA	NA	NA	124173765	124190000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_124173893_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
10980	chr12	-	3094	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	-113	-2	-113	2	multi-exon	FALSE	canonical	3	148	junction_1	0	409	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGGTATCTTGTCTTAT	6297	False	NA	NA	False	NA	NA	NA	75716424	75677367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_75680283_75716245
10981	chr17	+	2196	15	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	346.185275391602	2	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165706	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177046_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
10982	chr17	+	2724	7	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	17	3	intron_retention	FALSE	canonical	3	546	junction_4	71.6348766702055	810	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTCTTTCCTTTACTT	5639	False	NA	NA	False	NA	NA	NA	34128488	34134559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131782_34132246_34132701_34132816_34133037_34134316
10983	chr11	+	2240	14	NNC	ENSMUSG00000007739.11	novel	627	3	NA	NA	340	186	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1433.67792839496	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940991	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22941553_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
10984	chr3	+	3835	5	FSM	ENSMUSG00000005687.15	ENSMUST00000136937.8	3878	5	46	-3	0	1	multi-exon	FALSE	canonical	3	3803	junction_1	91.1564589044572	266	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	NA	False	NA	NA	NA	103079064	103086144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103084736_103085670
10985	chr15	+	3474	22	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	77	junction_18	60.8888806130719	884	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775627	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
10986	chr7	-	3478	11	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	30	0	intron_retention	FALSE	canonical	3	117	junction_10	42.561602413443	30	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9634	False	NA	NA	False	NA	NA	NA	3218901	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
10987	chr6	+	1342	5	Antisense	novelGene_ENSMUSG00000002870.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	158	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGATTAAGAGGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	88860455	88864057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_88861085_88861350_88861516_88861665_88861846_88862824_88863077_88863941
10988	chr19	-	6360	8	Antisense	novelGene_ENSMUSG00000025019.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGGCCCTGCCTCCGCCG	NA	False	NA	NA	False	NA	NA	NA	41575732	41471113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41471221_41471963_41472040_41516459_41516524_41516997_41517078_41534311_41534445_41540885_41541174_41544044_41544140_41570215
10990	chr15	-	4904	30	NNC	ENSMUSG00000115829.2	novel	1426	3	NA	NA	-273182	-3119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	47	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCGGCGGCGTGCGCTCT	NA	False	NA	NA	False	NA	NA	NA	35646475	35371717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_35371920_35372074_35372252_35379032_35379177_35417654_35417776_35422451_35422621_35423260_35423442_35430253_35430435_35438862_35439125_35445715_35445810_35446181_35446307_35446768_35446905_35447828_35447922_35448677_35448868_35452242_35452412_35455100_35455296_35456758_35456886_35457340_35457433_35472028_35472211_35533443_35533574_35534329_35534506_35572204_35572313_35576521_35576671_35597538_35597667_35607273_35607510_35617742_35617962_35623744_35623950_35639996_35640168_35640672_35640788_35642540_35642609_35646116
10991	chr12	-	2294	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	43	2505	-7	-2505	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGAGTCATAAAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	13299171	13269478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
10993	chr10	+	2695	12	NIC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	-23	2	intron_retention	FALSE	canonical	0	0	junction_5	507.989506626835	3	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1538	False	NA	NA	False	NA	NA	NA	79690415	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
10994	chr5	+	4054	12	FSM	ENSMUSG00000014932.16	ENSMUST00000202543.4	2657	12	83	-1480	56	0	multi-exon	FALSE	canonical	3	599	junction_1	80.0238600782178	528	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	32768597	32844401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_32768720_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
10995	chr7	+	2995	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	-59	1091	-18	2	multi-exon	FALSE	canonical	3	270	junction_1	341	973	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGACTCATGCTTTCTTT	212	False	NA	NA	False	NA	NA	NA	3339040	3347867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3339318_3341727_3341816_3345237
10996	chr6	-	1951	9	ISM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	17	1790	17	1322	5prime_fragment	FALSE	canonical	3	5250	junction_6	173.962594758184	3	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTCAAGACAACTTGCCT	9286	False	NA	NA	False	NA	NA	NA	128415623	128408855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
10997	chr3	+	4311	21	FSM	ENSMUSG00000015522.19	ENSMUST00000090804.12	4325	21	14	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.9941174435031	58	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	NA	NA	NA	95341714	95404551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
10999	chr7	+	3136	24	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	103.085333638409	25	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTTCTAGTTTCTGG	1000	False	NA	NA	False	NA	NA	NA	97130229	97190602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165470_97165507_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
11000	chr1	+	4069	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-48	5	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	461	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTGTCTTTGTCCAGA	NA	False	NA	NA	False	NA	NA	NA	152969177	152995012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
11001	chr1	+	3002	8	Antisense	novelGene_ENSMUSG00000103238.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	50	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGGGTGCGCTGGCAGTG	720	False	NA	NA	False	NA	NA	NA	151345277	151376485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_151347167_151347386_151347561_151348822_151349096_151351890_151352107_151352622_151352786_151354289_151354377_151363022_151363207_151376469
11003	chrX	-	3617	20	FSM	ENSMUSG00000025059.17	ENSMUST00000156390.8	4245	20	-35	663	-19	-663	multi-exon	FALSE	canonical	3	125	junction_19	13.2977827073068	294	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATCTGCATTTCTCATT	NA	False	NA	NA	False	NA	NA	NA	84820278	84746205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
11004	chr10	-	4681	1	ISM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	181535	5	39421	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGGGAGTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	67933035	67928354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_67928400_67933000
11005	chr14	+	1722	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	36	4	-16	-1	multi-exon	FALSE	canonical	3	2255	junction_1	40	8393	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACACGTGTTTCTATATG	6575	False	NA	NA	False	NA	NA	NA	76741953	76745201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
11006	chr19	-	4296	22	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	-42	-133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	517.87390230133	1	155	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCATAACACAAAAAGCATG	8697	False	NA	NA	False	NA	NA	NA	60779138	60750409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759459_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761958_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769801_60769956_60770322_60770460_60770605_60770797_60778906
11007	chr11	+	3345	10	NNC	ENSMUSG00000059248.14	novel	778	7	NA	NA	-234	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	202.451640316068	14	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117217024	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117217575_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
11010	chr8	+	2684	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	-29	-2	19	2	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	9	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGTAGTGCTGTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	75836222	75854318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
11011	chr11	-	2237	10	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-7	intron_retention	FALSE	canonical	3	2002	junction_4	417.172492967704	39	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGACTTGCTGTTTTCT	9743	False	NA	NA	False	NA	NA	NA	106890290	106879461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106879806_106880149_106880300_106881014_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
11012	chr19	+	2807	21	NIC	ENSMUSG00000025001.12	novel	5868	22	NA	NA	-56	-2774	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	409.731164911824	5	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGGTCACATTATTTT	NA	False	NA	NA	False	NA	NA	NA	38919417	38956721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
11013	chrX	+	5814	29	FSM	ENSMUSG00000037369.18	ENSMUST00000044484.13	5918	29	62	42	0	-42	multi-exon	FALSE	canonical	3	111	junction_13	32.5682955886706	203	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTTAAAGGGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	18028875	18146133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
11014	chr8	+	1716	10	Genic_Genomic	ENSMUSG00000033751.6	novel	2494	2	NA	NA	-28223	5165	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCGCCAAGCACTTCCGG	9236	False	NA	NA	False	NA	NA	NA	85529927	85567276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_85529950_85561668_85562306_85562384_85562551_85564090_85564226_85564322_85564396_85564634_85564766_85564903_85564958_85565097_85565282_85565424_85565583_85567120
11015	chr5	+	3209	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4940	-97	intron_retention	FALSE	non_canonical	0	0	junction_3	773.287010766642	2	112	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTTAGAGTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208599	108256038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228888_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108252131_108252185_108252260_108252397_108254453
11017	chr4	-	2161	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	-60	7	-60	-7	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	5012	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCCTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137085091	137047013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
11018	chr18	-	3831	29	NIC	ENSMUSG00000044252.19	novel	3956	28	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	126.821317938561	91	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAAAGTGTGAATGC	NA	False	NA	NA	False	NA	NA	NA	13074889	12888394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_12889153_12889244_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
11020	chr10	+	3535	28	NNC	ENSMUSG00000040675.18	novel	3669	28	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_27	86.4681487065656	15	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGTTCAGCTAGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	3923100	4106109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105690
11021	chr9	+	3791	7	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	-883	-3	at_least_one_novel_splicesite	FALSE	non_canonical	3	19	junction_3	156.318762647212	251	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20926397	20940110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20927398_20930214_20930476_20936839_20937418_20937494_20937896_20938373_20938632_20938727_20938977_20939066
11022	chr11	-	2710	8	NIC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	3981	-2	intron_retention	FALSE	canonical	3	1798	junction_6	96.0977393605286	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCCATTGTCACTGCTG	7760	False	NA	NA	False	NA	NA	NA	120459686	120451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120452087_120452986_120453074_120453189_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999
11023	chr1	-	2852	21	NNC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	266.621191955928	23	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGATATTAAAGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	63215993	63182756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215586_63215664_63215744
11025	chr5	+	4097	4	NNC	ENSMUSG00000046079.17	novel	3929	3	NA	NA	10	0	intron_retention	TRUE	canonical	3	20	junction_1	251.968692940655	519	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4922	False	NA	NA	False	NA	NA	NA	105848685	105963076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_105848952_105852690_105852890_105880095_105880241_105959589
11028	chr8	+	2315	18	NNC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	-137	-1102	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	350.022559826568	5	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTTGTGGCTCAATGG	3272	False	NA	NA	False	NA	NA	NA	106939020	106978324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106939204_106940471_106940577_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
11029	chr19	-	4928	14	Intergenic	novelGene_1285	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	60	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTTCCCCCGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	45511098	45352189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_45352325_45394982_45395024_45411569_45411678_45444969_45445048_45459451_45459544_45491370_45491601_45496117_45496309_45501082_45501179_45501823_45501962_45502444_45502562_45504292_45504545_45505451_45505570_45507244_45507358_45507879
11031	chr12	+	2756	26	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	378.150340473204	12	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	8086	False	NA	NA	False	NA	NA	NA	76302246	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326231_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336532_76340931_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
11032	chr16	-	2977	14	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	316.306177039172	1	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8107	False	NA	NA	False	NA	NA	NA	4867730	4831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848102_4854782_4854922_4865597_4865678_4866613_4866651_4867669
11033	chr2	+	5614	11	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	-1	1	intron_retention	FALSE	canonical	3	201	junction_1	26.5827011419081	14	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGGTTTGTGTGTCTG	4064	False	NA	NA	False	NA	NA	NA	180609056	180624254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180615950_180618099_180618157_180619112_180621021_180621453_180621514_180622190_180622268_180622829
11034	chr10	+	2959	19	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-4	6	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_11	312.936830489067	1086	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAAAAATGTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	21171912	21244788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21226091_21226293_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
11035	chr2	+	2612	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	403.45228962047	2	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867539	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871543_84871905_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
11036	chr10	-	3726	11	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-24	-1000	intron_retention	FALSE	canonical	0	0	junction_10	623.781820831611	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCCACCCACTCCTTTC	8721	False	NA	NA	False	NA	NA	NA	128401827	128394636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128400536_128400661
11037	chr16	+	2584	2	Genic_Genomic	ENSMUSG00000092029.2	novel	661	1	NA	NA	-168	1808	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAAAAAGATAA	NA	False	NA	NA	False	NA	NA	NA	61197450	61200087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_61197772_61197824
11038	chr10	+	3410	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	-77	-3	-16	3	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	134	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTTTATGTTGTCATC	NA	False	NA	NA	False	NA	NA	NA	82190072	82215473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
11039	chr2	+	3513	11	NIC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	-34	-7	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	56.9639359595174	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATGTCTGAAAAGTGGA	NA	False	NA	NA	False	NA	NA	NA	118692474	118713383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708355_118708429_118710933
11040	chr12	+	3058	28	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	475.494460711534	3	68	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACCTTGGTGTTGAAACA	8034	False	NA	NA	False	NA	NA	NA	76302194	76366573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327500_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336309_76336460_76336633_76337754_76337897_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361783_76361876_76364380_76364475_76366354
11041	chr1	-	4042	12	FSM	ENSMUSG00000026705.17	ENSMUST00000111611.8	4072	12	14	16	14	7	multi-exon	FALSE	canonical	3	70	junction_3	12.7525722571391	158	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTTTTAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	160959067	160915960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160925967_160926711_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
11042	chr9	+	2033	7	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	708.762066328797	6	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183590	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108203717_108203817_108204782_108204941_108208069_108208191_108212249_108212381_108213846
11043	chr12	+	2331	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	45	470	-5	-470	multi-exon	FALSE	canonical	3	3391	junction_8	417.753084967664	1319	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGAGTTCCTTTCCTTTG	4765	False	NA	NA	False	NA	NA	NA	71021439	71042651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
11044	chr9	+	2784	12	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	2	intron_retention	FALSE	canonical	3	69	junction_1	177.122687087204	91	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCTTTTATAGTTTG	9118	False	NA	NA	False	NA	NA	NA	15217555	15228268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678
11045	chr6	+	3258	20	Antisense	novelGene_ENSMUSG00000080465.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCGGGAACGACCTCCGC	NA	False	NA	NA	False	NA	NA	NA	71857672	71885744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_71858218_71858490_71858651_71859173_71859216_71861525_71861612_71862293_71862387_71862483_71862563_71865550_71865665_71866571_71866671_71869452_71870515_71871273_71871359_71871805_71871863_71872884_71872977_71874096_71874152_71875322_71875442_71878181_71878304_71879839_71879945_71880411_71880481_71882082_71882129_71884729_71884831_71885617
11046	chr4	+	1954	5	Intergenic	novelGene_2039	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	62.1022342593244	2	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	2291	False	NA	NA	False	NA	NA	NA	146289349	146319727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289519_146291416_146291510_146312866_146312972_146317966_146319331_146319504
11047	chr2	+	1365	11	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-17	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	350.654473805768	9	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTGTAGCACCACACA	1956	False	NA	NA	False	NA	NA	NA	5850083	5873519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5852918_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868386_5868486_5869157_5869271_5871164_5871219_5872899_5873363_5873408
11048	chr9	+	6675	15	NIC	ENSMUSG00000032384.17	novel	7208	14	NA	NA	10	-578	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	5.25327885948483	108	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATGCTATAACTCTCC	NA	False	NA	NA	False	NA	NA	NA	65816277	65951709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65816451_65828285_65828351_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
11049	chr5	+	2677	3	NNC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	-4938	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	879.5	7	65	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATGAGTTTTTCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208754_108252291_108252397_108254453
11050	chr12	-	5555	13	FSM	ENSMUSG00000021245.16	ENSMUST00000220854.2	4699	13	0	-856	0	-4	multi-exon	FALSE	canonical	3	35	junction_11	18.8126730335342	87	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGGGTTTGTTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85317373	85281297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85309540_85309637_85312925_85316249_85317312
11051	chr19	+	6007	36	FSM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	21	733	21	-119	multi-exon	FALSE	canonical	3	156	junction_7	35.2497097976186	131	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTTTTAAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	47079227	47119571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_47079307_47081220_47081340_47082189_47082322_47083646_47083815_47085293_47085456_47086559_47086684_47087129_47087312_47089501_47089610_47091005_47091213_47092190_47092316_47092471_47092533_47093094_47093242_47094735_47094988_47095449_47095591_47095992_47096188_47096861_47097033_47097992_47098213_47099399_47099550_47100476_47100593_47101579_47102155_47102993_47103057_47105735_47105842_47107974_47108065_47108231_47108335_47108685_47108864_47112869_47112927_47113483_47113607_47114744_47114868_47115313_47115549_47115689_47115807_47116384_47116532_47116713_47116962_47117580_47117750_47118067_47118222_47118386_47118553_47119077
11052	chrX	-	2958	8	NIC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_6	520.379100428971	4	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGTTGGCATGAGTC	NA	False	NA	NA	False	NA	NA	NA	72140623	72129902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72136911_72137788_72137859_72138551_72138689_72140586
11053	chr5	+	3338	15	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	17	-5	intron_retention	FALSE	canonical	3	57	junction_1	70.0242305001837	55	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9216	False	NA	NA	False	NA	NA	NA	110987882	111022006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111015960_111019892_111019974_111021345
11054	chr2	+	3239	12	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	2	0	intron_retention	FALSE	canonical	3	523	junction_6	47.1377443472719	19	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	174257645	174269295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174266534_174266906_174267047_174267705_174267821_174268109_174268423_174268609_174268740_174268823
11055	chr1	+	2189	13	Antisense	novelGene_ENSMUSG00000064823.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	33	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGCCAGCTACAGCTAGC	NA	False	NA	NA	False	NA	NA	NA	86278207	86287062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86278416_86278530_86278747_86279967_86280039_86280228_86280354_86280845_86281002_86281452_86281578_86282741_86282866_86283772_86283915_86284091_86284180_86284277_86284464_86284678_86285173_86285826_86285945_86286926
11056	chr19	-	3019	22	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAATTCGCGCGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	38956721	38919403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38919519_38919833_38919955_38923855_38923979_38926847_38926905_38928912_38928950_38929038_38929104_38930895_38930935_38932155_38932384_38933832_38934018_38935168_38935311_38938629_38938827_38940276_38940374_38941984_38942147_38943132_38943273_38943355_38943490_38945471_38945561_38945639_38945762_38947487_38947603_38948110_38948273_38953040_38953133_38953875_38953927_38956175
11057	chr2	-	3965	14	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	120.796175338176	862	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGGAAAATATCTGATGA	NA	False	NA	NA	False	NA	NA	NA	48839246	48792845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800258_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
11058	chr8	-	2818	10	NNC	ENSMUSG00000031701.7	novel	2919	9	NA	NA	48	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	253.188116273695	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACCAGTTCCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	86281925	86264270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86279924_86279967_86280040_86280545_86280606_86281798
11059	chr1	-	3183	19	NNC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	137.986770255094	4	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAACGTTTGCCCTCTT	NA	False	NA	NA	False	NA	NA	NA	93406534	93335490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93357126_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
11061	chr3	-	3718	7	NNC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	-17	-34	intron_retention	FALSE	non_canonical	0	0	junction_4	126.138371992383	16	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGCCTCGAGGCCAAAAAT	3720	False	NA	NA	False	NA	NA	NA	89319194	89309309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313232_89314715_89316474_89318464_89318688_89319090
11062	chr6	-	4701	13	NNC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	46	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	30.7420947381418	20	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTGCCCTCATTTGGT	9710	False	NA	NA	False	NA	NA	NA	38331492	38282234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309589_38310124_38313346_38313600_38317154_38317291_38330849
11064	chr18	+	2569	1	NIC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	285	-81	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGAACAGGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	77866939	77869508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_77866900_77869500
11065	chr13	+	5598	26	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	4	-19	intron_retention	FALSE	canonical	2	19	junction_14	223.049648284861	2	190	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCAACTCCAACCTGT	NA	False	NA	NA	False	NA	NA	NA	6598198	6630059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613505_6615026_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
11066	chr3	+	4024	25	NNC	ENSMUSG00000025437.16	novel	4183	24	NA	NA	68	-9	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	141.19981901153	3	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAATGTATAAACTGAAT	NA	False	NA	NA	False	NA	NA	NA	152052219	152098961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152052277_152062504_152062733_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
11067	chr6	+	2302	12	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCAGCCGCGAGCTACAG	NA	False	NA	NA	False	NA	NA	NA	144944886	145021779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144945846_144945966_144946031_144950076_144950152_144953341_144953482_144955774_144955864_144961176_144961318_144964917_144965084_144978510_144978629_144980266_144980378_144985160_144985364_144993018_144993089_145021613
11069	chr12	-	7130	29	NNC	ENSMUSG00000113774.2	novel	701	2	NA	NA	-83987	-352	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	78	25	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGCCCGGCGGCCATCTTC	NA	False	NA	NA	False	NA	NA	NA	25109540	25024959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_25025085_25032233_25032375_25036900_25037001_25038529_25038629_25039735_25039835_25040673_25040772_25042206_25042306_25044805_25045008_25047229_25047328_25048702_25048802_25049257_25049357_25051569_25051749_25052985_25053151_25053940_25054123_25055051_25055216_25058055_25058212_25058399_25058692_25060070_25060210_25060891_25061135_25061495_25061587_25063294_25063439_25066886_25067050_25086450_25086629_25088319_25088549_25090453_25090566_25101089_25101224_25102791_25102894_25103795_25104032_25106578
11070	chr5	+	1941	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	405	242	405	-242	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	16	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGGCATGGTGACACATG	NA	False	NA	NA	False	NA	NA	NA	129864466	129874970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
11071	chr10	-	2467	14	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_10	153.724836782437	60	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417402	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116353221_116353289_116363731_116363855_116384937_116385081_116417357
11072	chr13	-	3986	4	FSM	ENSMUSG00000071281.13	ENSMUST00000130891.3	1103	4	-3	-2880	-3	0	multi-exon	TRUE	canonical	3	31	junction_1	3.85861230093008	144	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGTTATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	67872448	67853427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67872306
11073	chr2	+	2283	16	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	34	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	607.311803496908	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGTGTTGATGGAGCCT	NA	False	NA	NA	False	NA	NA	NA	157121099	157167972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159954_157163662_157163793_157167630
11074	chr11	-	1825	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_10	4163.39696041586	17	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69562088	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69561997
11076	chr2	-	3954	20	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	15	0	intron_retention	FALSE	canonical	3	88	junction_19	48.3341898227039	5	51	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCAGTACTGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	11782303	11747383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
11077	chr16	-	1992	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	92	9	92	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	45975348	45973356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975300
11078	chr8	+	4098	6	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-175	-2308	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	523.089514328093	86	59	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGTATACTCCTATAC	8833	False	NA	NA	False	NA	NA	NA	20157838	20176359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20158176_20163109_20163409_20167037_20167158_20169060_20169229_20173024_20173221_20173381
11079	chr16	-	2687	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	62	71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	297.899731453387	2	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAAGAGTTGTACTTGGT	6328	False	NA	NA	False	NA	NA	NA	38370522	38345427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355170_38358295_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
11080	chr8	+	2639	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	-23	12	intron_retention	FALSE	non_canonical	0	0	junction_1	570.184741991576	1	63	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACAAGGTTGACTCTT	NA	False	NA	NA	False	NA	NA	NA	75836228	75854333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836767_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851432_75851572_75852864_75852993_75853850
11083	chrX	-	1341	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	-370	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACACAGTTTTCTAATATG	NA	False	NA	NA	False	NA	NA	NA	135642027	135634071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634600_135634673_135635251_135636294_135636372_135640553_135640644_135641958
11088	chr14	+	3457	13	ISM	ENSMUSG00000021806.5	ENSMUST00000225791.2	3976	17	-341	7535	-322	-7535	5prime_fragment	FALSE	canonical	3	1333	junction_3	102.990290804522	2	75	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCAGACTCCACCCGGCT	NA	False	NA	NA	False	NA	NA	NA	19801010	19848663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464
11090	chrX	-	4068	15	FSM	ENSMUSG00000061778.11	ENSMUST00000004715.2	2015	15	-13	-2040	-5	0	multi-exon	FALSE	canonical	3	42	junction_12	10.321366781822	182	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTCTCTAATTGATA	NA	False	NA	NA	False	NA	NA	NA	163763344	163719164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_163721689_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
11091	chr11	-	3175	14	NNC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	-2260	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	146.730522229856	3	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCAATGGAGGCTGTTAA	NA	False	NA	NA	False	NA	NA	NA	100290849	100261451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100290758
11092	chr4	+	2921	17	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	149.015099906016	19	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5273	False	NA	NA	False	NA	NA	NA	108436651	108472030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462783_108463434_108463555_108469247_108469418_108470265_108470354_108471477
11093	chr7	-	2589	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	-16	6	-16	-6	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	25	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTCTGTTGCCCTAGT	NA	False	NA	NA	False	NA	NA	NA	33868016	33840118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
11094	chr9	-	2714	11	NNC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1150	4396	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	10010	False	NA	NA	False	NA	NA	NA	108442766	108438339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108439055_108439370_108439578_108439988_108440078_108440333_108440540_108440622_108440709_108440789_108440889_108441109_108441975_108442061_108442208_108442298_108442443_108442523_108442609_108442694
11095	chr4	-	2451	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	214.65227695042	1	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726906	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698154_147698220_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726803
11096	chr8	-	2273	11	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	244.33378808507	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615020	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591255_96591355_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
11098	chr4	+	3080	16	Genic_Genomic	ENSMUSG00000028451.13	novel	1018	3	NA	NA	10017	16785	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGGAGACTGAACCGAGAAA	10003	False	NA	NA	False	NA	NA	NA	42979962	43000425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_42980637_42980795_42980948_42982839_42983146_42983358_42983577_42984303_42984427_42984530_42984692_42985149_42985265_42985929_42986070_42986146_42986278_42988659_42988765_42990745_42990877_42993147_42993279_42993684_42993829_42995895_42996069_42996231_42996344_43000161
11099	chr9	+	2585	13	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-13	intron_retention	FALSE	canonical	3	1280	junction_12	412.830540967545	26	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAGTTTGGGAAAAAAA	1178	False	NA	NA	False	NA	NA	NA	108437667	108442750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
11100	chr8	-	4588	33	Antisense	novelGene_ENSMUSG00000004565.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	99	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCCATCCCCCTACGTG	NA	False	NA	NA	False	NA	NA	NA	3596950	3566929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3567165_3567324_3567406_3567555_3567656_3571274_3571415_3571506_3571666_3572101_3572181_3572275_3572403_3572584_3572667_3572756_3572919_3573251_3573340_3573755_3573863_3573994_3574169_3574254_3574328_3580959_3581168_3581428_3581555_3581632_3581759_3582001_3582115_3582349_3582426_3584527_3584668_3584828_3584894_3585459_3585633_3585821_3586003_3586542_3586660_3586860_3587018_3587246_3587364_3587448_3587520_3587967_3588084_3591288_3591593_3592297_3592421_3592848_3592950_3593074_3593176_3593952_3594059_3596490
11101	chr11	-	3809	5	NNC	ENSMUSG00000020738.17	novel	1051	4	NA	NA	-6	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2066.31972054181	69	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGAGCTGTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	115427061	115413935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115414596_115415559_115418367_115421171_115421244_115425377_115425510_115426923
11102	chr11	+	1783	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACAGTATTGTTTGTCT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655902_75655959
11103	chr4	+	2128	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	597	5	NA	NA	2	-1	multi-exon	TRUE	non_canonical	0	0	junction_3	3.77491721763537	2	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	914	False	NA	NA	False	NA	NA	NA	145237348	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145343687_145343746_145348721_145349326_145350417_145351517_145351690
11104	chr1	-	4157	24	NNC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-2465	-1863	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	494.936924815995	1	160	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAAATGCTAATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	55058553	55026194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036347_55037206_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042355_55042444_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051430_55053641_55053722_55055534_55055650_55055937_55056043_55058392
11105	chr9	+	3386	6	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	0	-3	intron_retention	FALSE	non_canonical	3	19	junction_3	170.187661127357	426	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20927280	20940110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20927398_20930214_20930476_20936839_20937418_20937494_20938632_20938727_20938977_20939066
11106	chr7	+	4459	29	NNC	ENSMUSG00000042055.14	novel	4550	29	NA	NA	14	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	35.0779561862444	19	79	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGGAAAATCCCAGCCAA	NA	False	NA	NA	False	NA	NA	NA	129193655	129237440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235456_129236543
11107	chr9	+	3417	11	Fusion	ENSMUSG00000103970.2_ENSMUSG00000006673.15	novel	721	3	NA	NA	79	2	multi-exon	FALSE	canonical	3	61	junction_1	223.453440340488	58	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1762	False	NA	NA	False	NA	NA	NA	108394900	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_108395176_108395965_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
11108	chr11	-	2059	9	NIC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	-94	0	intron_retention	FALSE	canonical	3	12659	junction_4	773.992480179879	6	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69561803	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69560073_69560958_69561099_69561440_69561574_69561753
11110	chr11	-	2873	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	0	88	0	-88	multi-exon	FALSE	canonical	3	411	junction_2	109.5	1	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758959	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11753064_11756095_11756216_11758894
11111	chr15	+	2769	12	FSM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	-85	-43	-85	0	multi-exon	FALSE	canonical	3	528	junction_1	58.9672832668062	899	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7052	False	NA	NA	False	NA	NA	NA	85743860	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
11112	chr6	-	2467	12	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	-4	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1519.23768944323	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	NA	False	NA	NA	NA	144994542	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945277_144945328_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
11113	chr4	-	2114	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-58	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	310.876304000303	3490	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAATAACCATAGATAAAAGA	2555	False	NA	NA	False	NA	NA	NA	129229100	129203182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129225654_129225715_129228289_129228438_129229010
11114	chr8	-	4547	13	NIC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	-3365	-26	intron_retention	FALSE	canonical	3	152	junction_10	23.084837496119	6	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAATATCATATTGAT	NA	False	NA	NA	False	NA	NA	NA	84458324	84450018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84450532_84450607_84450707_84450820_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010
11115	chr10	-	3948	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	222	-3	222	3	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	1490	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTTTTTTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	71073888	71061290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
11116	chr5	+	1957	9	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1371.01417183594	9	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	302	False	NA	NA	False	NA	NA	NA	77099169	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114477
11117	chr10	-	2830	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	-81	-1555	-81	1555	mono-exon	FALSE	NA	NA	NA	NA	NA	653	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	2381	False	NA	NA	False	NA	NA	NA	41931383	41928553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41928600_41931400
11118	chr15	-	4448	36	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-17	-9	intron_retention	FALSE	canonical	0	0	junction_10	138.142736002311	1	134	21	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACGATTTCTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	76491728	76480025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481908_76481988_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486788_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
11119	chr11	+	3927	7	NNC	ENSMUSG00000020794.14	novel	3931	7	NA	NA	-13	-7	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	361.934347944793	526	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTATTATGAGCTATTT	NA	False	NA	NA	False	NA	NA	NA	72498095	72577300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72498462_72553896_72554000_72560859_72560966_72563785_72563884_72568530_72568710_72570194_72570319_72574349
11120	chr5	+	2532	7	NNC	ENSMUSG00000029304.15	novel	1456	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2269.72375338204	28	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGGAGTCTGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	104582986	104588910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583264_104583310_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
11121	chr5	+	3677	14	NNC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	79	-9	intron_retention	FALSE	canonical	0	0	junction_5	19.9792792070469	3	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTGGGTATGGTGGTGC	8222	False	NA	NA	False	NA	NA	NA	138170408	138178682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173127_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
11122	chr11	-	4021	29	NIC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	1	-70	intron_retention	FALSE	canonical	3	227	junction_18	35.8650389712344	12	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTCCACATGTGTG	NA	False	NA	NA	False	NA	NA	NA	60618048	60605038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
11123	chr4	+	5266	12	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	28	-15	intron_retention	FALSE	canonical	3	84	junction_11	75.3727925132117	6	93	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGAGTTGTTTGCTTTCT	53	False	NA	NA	False	NA	NA	NA	11558999	11615790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11612439_11615442
11124	chr6	-	3451	19	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	218.799981944162	3	77	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6217232	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6179322_6179596_6180970_6181114_6191263_6191318_6216995
11125	chr2	-	1590	1	Genic_Genomic	ENSMUSG00000027170.13	novel	NA	NA	NA	NA	6530	952	mono-exon	FALSE	NA	NA	NA	NA	NA	6	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTGTCTTTCATACCTT	NA	False	NA	NA	False	NA	NA	NA	104830638	104829048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_104829000_104830600
11126	chr5	+	3745	13	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	4	3	intron_retention	FALSE	canonical	3	120	junction_1	52.5071423713003	1	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTTAGTAGTTTGTTG	9186	False	NA	NA	False	NA	NA	NA	110987852	111022002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111015960_111019892_111019974_111021345
11127	chr1	+	3440	23	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	34	-252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	464.237168654483	1	93	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3181	False	NA	NA	False	NA	NA	NA	180396527	180428565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405279_180406878_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
11128	chr10	-	3095	23	NNC	ENSMUSG00000038417.5	novel	3282	23	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	83.2391878666185	3	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTTTTGCTTCTGACT	NA	False	NA	NA	False	NA	NA	NA	41179229	41064167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41179142
11129	chr6	-	3174	15	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	1213	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1076.80477831975	27	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	598	False	NA	NA	False	NA	NA	NA	88874446	88860455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865237_88865991_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870494_88874268
11130	chr7	-	5232	32	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	9	1	intron_retention	FALSE	canonical	1	41	junction_21	29.9910496534085	11	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACCTTCCCTGTCTATAA	NA	False	NA	NA	False	NA	NA	NA	29979835	29939566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
11131	chr6	+	1422	13	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	21	-3920	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	302.575736616287	1	29	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACAGGAGTCATCTCCA	5458	False	NA	NA	False	NA	NA	NA	125108892	125117796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111512_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752
11133	chr16	-	2223	13	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	9	110	intron_retention	FALSE	canonical	3	4287	junction_7	272.411797652011	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87292738	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87283240_87283320_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
11134	chr11	-	2256	10	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-28	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	914.52352837454	2	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTCACTGCTGCTTTAT	3751	False	NA	NA	False	NA	NA	NA	120463695	120451126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453041_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458984_120459098_120462372_120462554_120463482
11136	chr7	-	2343	21	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	320.433905041274	4	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153793	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113410_143116714_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
11137	chr2	+	3667	20	NNC	ENSMUSG00000026790.20	novel	3826	21	NA	NA	204	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	293.600921975803	3	116	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGTATCACTATGTCAG	9608	False	NA	NA	False	NA	NA	NA	29782211	29821744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810791_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
11140	chr2	+	4122	35	NNC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	80.9090864910525	1	114	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	180961510	180998409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993486_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716_180997873_180997954_180998052_180998150
11141	chr12	+	1953	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-49	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1989.8006041924	13	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759024_24759411_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
11142	chr7	+	2777	13	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	345.903998804421	5	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	NA	False	NA	NA	NA	79944232	79966007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79944340_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
11143	chr10	+	4328	23	ISM	ENSMUSG00000001150.8	ENSMUST00000170795.3	6427	29	11939	3	-252	-2	3prime_fragment	FALSE	canonical	3	162	junction_1	37.3435303124698	171	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGCCGCCTTAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	76316699	76351688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
11144	chr15	-	1989	14	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	4	-8	intron_retention	FALSE	canonical	3	1461	junction_8	116.586712529608	758	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTTCCTTCGTCCTGTG	2749	False	NA	NA	False	NA	NA	NA	77855009	77843205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
11145	chr18	+	3537	11	NNC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	73.6791015146086	574	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGGTGTCAGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	63110931	63132518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_63111096_63113536_63113605_63115689_63115796_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
11146	chr9	+	2258	21	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	123.107463218117	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385255	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108388343_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
11147	chr6	-	3548	6	NNC	ENSMUSG00000029998.15	novel	4295	6	NA	NA	61	-615	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	76.4669863405117	3	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCTCTTCTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	86374040	86363602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_86366354_86368657_86368811_86369118_86369295_86371390_86371566_86372895_86373103_86373954
11148	chr4	-	2374	12	NNC	ENSMUSG00000028693.16	novel	1017	5	NA	NA	0	-613	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	331.394948015578	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGAGTGTCTTAGCCATA	NA	False	NA	NA	False	NA	NA	NA	116484690	116460601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116460883_116461081_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
11151	chr4	+	3474	10	NNC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-1	-11	intron_retention	FALSE	non_canonical	0	0	junction_1	294.901406416065	5	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAATTGAGTTAA	9713	False	NA	NA	False	NA	NA	NA	155648297	155675443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155648437_155661448_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155673066
11152	chr1	+	2728	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	61	51	5	-50	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	1054	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCACCCTCCCTGTAGTAT	NA	False	NA	NA	False	NA	NA	NA	55170450	55194007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
11153	chr2	-	3298	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	32	7	5	-7	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	475	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAATGCAGACTTACTG	NA	False	NA	NA	False	NA	NA	NA	106804737	106792878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
11154	chr1	-	4447	10	NNC	ENSMUSG00000026034.18	novel	4865	11	NA	NA	15	-64	intron_retention	FALSE	canonical	0	0	junction_6	68.3478755980421	16	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAACATCTTTCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	58463210	58451222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58454817_58455759_58456543_58458825_58460468_58460932_58461094_58463078
11155	chr5	+	4948	6	NIC	ENSMUSG00000029178.15	novel	1562	6	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	260.049687559897	251	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATAATCATGTGATTACT	8280	False	NA	NA	False	NA	NA	NA	64969715	64990244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_64969847_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
11157	chr4	-	4569	22	NIC	ENSMUSG00000033326.16	novel	4550	22	NA	NA	-11	-5	combination_of_known_splicesites	FALSE	canonical	3	25	junction_21	14.8531740730846	175	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGGATTGACTGTGGT	NA	False	NA	NA	False	NA	NA	NA	118036862	117994160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118036798
11159	chr4	-	3725	20	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	456.795644011424	1	127	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135080462	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054532_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071846_135071911_135071981_135073626_135073757_135074045_135074169_135074425_135074516_135080407
11160	chr8	-	3106	17	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-22	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	364.567809193297	1	90	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATTATCTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	86026120	85987018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010777_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
11161	chr2	-	2555	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	-83	3	-83	-3	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	1657	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75535068	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
11162	chr14	-	5078	11	NNC	ENSMUSG00000035078.7	novel	2570	10	NA	NA	286	-948	intron_retention	FALSE	non_canonical	0	0	junction_1	65.1855812277531	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCTCACTGTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	63781145	63758047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63758511_63758594_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
11163	chr1	+	5362	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	-67	-842	-67	-11	multi-exon	FALSE	canonical	3	113	junction_9	21.4185796810983	242	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATGCAAGTGTTTGAG	NA	False	NA	NA	False	NA	NA	NA	24717643	24805371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
11165	chr7	+	3694	7	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	21	-286	intron_retention	FALSE	non_canonical	0	0	junction_4	318.321465747372	2	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTTGGATATATTTTAA	NA	False	NA	NA	False	NA	NA	NA	103868022	103884073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877603_103880998_103881097_103881319_103882780_103882825
11166	chr5	-	2151	14	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10678	-7993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	43	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGCACCCGGCCCGCCCCC	3875	False	NA	NA	False	NA	NA	NA	129875191	129864437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867061_129867698_129867750_129868530_129868644_129868843_129869005_129869080_129869164_129870696_129870793_129871410_129871562_129872178_129872313_129873806_129873911_129874420_129874494_129874587
11167	chr4	+	2937	14	NNC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-36	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	57.0281774016273	7	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603864	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630666_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
11168	chr1	+	3063	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	145.072131952997	37	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAGTTTAAATGCTAAT	9766	False	NA	NA	False	NA	NA	NA	175708359	175736303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708794_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721606_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
11169	chr14	+	3783	6	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	111.93855457348	1	93	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTCATGGTTTCTTTGT	9635	False	NA	NA	False	NA	NA	NA	47535730	47560546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47557354_47557391_47557459_47558168
11171	chr11	-	2301	11	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	179.223910235214	2030	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTACATTGCCGATATTT	977	False	NA	NA	False	NA	NA	NA	79145495	79130214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79130461_79130567_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141864_79141912_79141976_79145178
11172	chr5	-	2304	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-35	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	755.573197739873	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTGCTTGTTAATAAC	2285	False	NA	-124	True	NA	NA	NA	138170115	138162864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165019_138165321_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167165_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
11173	chr5	-	2314	1	FSM	ENSMUSG00000080935.4	ENSMUST00000121655.2	1293	1	-56	-965	-56	965	mono-exon	FALSE	NA	NA	NA	NA	NA	169	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTACAATAAAATTACTAT	1739	False	NA	NA	False	NA	NA	NA	138363870	138361556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138361600_138363900
11174	chr19	+	2281	7	NIC	ENSMUSG00000024740.11	novel	1589	11	NA	NA	118	-1	intron_retention	FALSE	canonical	3	3022	junction_2	201.756798040501	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCTTATTGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	10602528	10607182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10602696_10603259_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
11175	chr17	-	5117	12	NIC	ENSMUSG00000059811.14	novel	3618	13	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	301	junction_4	43.1156430740161	6	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGAAAGTTGTGATTCT	3821	False	NA	NA	False	NA	NA	NA	80203482	80156495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
11176	chr3	+	2581	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	0	246	0	-220	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGAAGCTCACTAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	96465272	96468953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
11177	chr1	+	2146	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	663.067564849583	3120	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731710_59731888_59735161_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
11178	chr11	-	1863	4	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1155	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAGATTTATCTATTGG	NA	False	NA	NA	False	NA	NA	NA	48644703	48641538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48643849_48643931_48644153_48644525
11179	chr13	+	3131	9	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	52	462	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.7112788120955	1	72	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61952131	62009951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61952220_61974122_61974263_61987297_61987915_62005782_62005910_62006094_62006156_62007517_62008362_62008445_62008663_62008746_62009074_62009241
11180	chr18	+	3167	10	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	139	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	255.131241946736	1	66	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTTATGGCTACATTG	NA	False	NA	NA	False	NA	NA	NA	13107869	13126005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122893_13123549
11181	chr3	+	3157	7	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	611.963892362577	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836592	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841292_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
11182	chr8	-	2392	11	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	4505	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	460.886547861835	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTAACAATTTTGGATTAT	NA	False	NA	NA	False	NA	NA	NA	86021587	85987029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005491_86014371_86014449_86016334_86016432_86021487
11183	chr4	-	3614	11	NNC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.5519940891991	41	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGAAGAGTGCTCTGTG	-24	True	NA	NA	False	NA	NA	NA	46138455	46114742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_46115340_46115434_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
11184	chr4	+	2962	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	7	182	7	-182	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	815	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACTTCTGTCCATCTGT	9077	False	NA	NA	False	NA	NA	NA	152018154	152066412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
11185	chr11	-	2418	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.815131191409	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239149	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191390_75191865_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
11186	chr9	-	4411	10	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	2454	0	intron_retention	FALSE	canonical	3	263	junction_8	39.0311682987511	2	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	8066	False	NA	NA	False	NA	NA	NA	57669137	57657991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57668324_57668998
11187	chr2	+	2179	17	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-115	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	589.346128667187	67	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157121230	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162104_157163712_157163793_157167630
11189	chr4	-	4397	7	FSM	ENSMUSG00000040928.16	ENSMUST00000106061.9	4426	7	29	0	-1	0	multi-exon	FALSE	canonical	3	32	junction_6	60.2301142840246	243	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1217	False	NA	NA	False	NA	NA	NA	129083306	129041797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083164
11191	chrX	+	2256	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1382.88775956531	4	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473310	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100486975_100487039_100487098_100487882_100487968_100488293_100488397_100488900_100488922_100489796_100489835_100491199
11192	chr10	+	904	6	FSM	ENSMUSG00000020186.8	ENSMUST00000020403.7	1384	6	390	90	-11	18	multi-exon	FALSE	canonical	3	157	junction_1	20.350921355064	1414	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGATTTTTAGATGAT	NA	False	NA	NA	False	NA	NA	NA	110756039	110775393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
11194	chr16	-	4937	47	Antisense	novelGene_ENSMUSG00000033653.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	121	11	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAGGCCAGCCCACGCAC	NA	False	NA	NA	False	NA	NA	NA	21463420	21241930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_21241974_21253434_21253811_21254498_21254570_21261081_21261213_21262836_21262933_21266004_21266038_21267098_21267153_21274977_21275102_21276126_21276214_21278488_21278559_21279871_21280024_21280125_21280187_21282340_21282450_21285160_21285245_21288866_21289037_21293996_21294071_21295221_21295258_21296233_21296326_21296593_21296640_21297141_21297240_21314634_21314677_21318937_21319159_21323145_21323236_21325517_21325569_21330265_21330310_21336030_21336104_21336860_21336982_21340632_21340703_21345123_21345247_21346285_21346340_21350026_21350113_21351032_21351116_21351810_21351910_21358766_21358853_21362011_21362063_21372822_21372971_21378081_21378181_21378951_21378991_21381879_21381982_21386716_21386801_21387135_21387220_21393714_21393797_21395372_21395542_21400279_21400426_21426919_21426970_21459426_21459508_21462868
11195	chr14	-	4001	13	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	16	-77	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	63.7296808576838	13	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATTGTCTTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	58127717	58070236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58073012_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
11197	chr4	+	3188	15	NIC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-8	-4	intron_retention	FALSE	canonical	3	650	junction_4	48.8698813802781	14	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATTAGGAACTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	124923842	124949165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
11199	chr8	-	3233	6	NIC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	35	-6	intron_retention	FALSE	canonical	3	2367	junction_4	172.09230081558	4	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTATGTCTGTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	108315055	108307018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_108307952_108309013_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
11201	chr9	-	3082	20	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6360	37231	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	5017	False	NA	NA	False	NA	NA	NA	21316656	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299090_21299403_21299446_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21315355_21315486_21315989
11202	chr6	+	4124	30	Antisense	novelGene_ENSMUSG00000099587.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	118	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGCAGGCTGAGACGGAGA	8304	False	NA	NA	False	NA	NA	NA	125144983	125168599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_125145282_125145554_125145716_125145828_125145952_125146774_125146962_125147096_125147180_125147691_125147787_125147880_125148030_125148668_125148733_125150015_125150126_125150322_125150487_125150562_125150648_125150740_125150874_125151181_125151318_125153108_125153193_125153614_125153795_125154296_125154516_125154774_125154888_125156200_125156376_125156475_125156566_125156659_125156789_125157939_125158142_125160876_125161025_125161191_125161313_125161394_125161526_125162656_125162805_125163069_125163247_125163718_125163776_125164039_125164118_125166726_125166868_125168456
11203	chr5	-	3745	28	NNC	ENSMUSG00000029202.13	novel	4146	32	NA	NA	-8366	116	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_27	101.525821619026	15	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGGTGTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	65863982	65780096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65863839
11204	chr6	-	2372	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	171	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1237.32990346148	1	76	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8656	False	NA	NA	False	NA	NA	NA	145021739	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953477_144955779_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
11205	chr2	+	3935	5	Genic_Genomic	ENSMUSG00000085322.3	novel	1431	2	NA	NA	-17104	-1179	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	15	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCGGCGAGGTCGGGGCT	500	False	NA	NA	False	NA	NA	NA	168590958	168608851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_168592383_168594375_168594666_168596356_168598509_168598672_168598723_168608832
11207	chr12	-	2311	25	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-16	-2334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	596.581603282401	1	33	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299180	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277421_13279322_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299103
11208	chr1	-	1939	15	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	749	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGAACAGACCACGTTGCT	NA	False	NA	NA	False	NA	NA	NA	59750669	59724206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729722_59731495_59731547_59735134_59735257_59737479_59737616_59740040_59740109_59741969_59742106_59743220_59743366_59743777_59743908_59744749_59744914_59745789_59745926_59746160_59746222_59748159_59748293_59749650_59749812_59750429
11209	chr3	-	4549	23	FSM	ENSMUSG00000033222.17	ENSMUST00000076941.12	4541	23	-8	0	-8	0	multi-exon	FALSE	canonical	3	226	junction_14	22.0712594988997	254	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	100876987	100846175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
11210	chr10	+	2658	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	249.386416580949	39	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171915	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223253_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
11211	chr17	+	1568	11	NNC	ENSMUSG00000002835.10	novel	7698	11	NA	NA	10526	2579	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	9	5	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTCTTGAACTTGATGTC	2825	False	NA	NA	False	NA	NA	NA	56375268	56381868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56375680_56375954_56376116_56376190_56376317_56376395_56376616_56376691_56376773_56377647_56377728_56377887_56377986_56379400_56379526_56379715_56379785_56380072_56380236_56381834
11212	chr4	-	4036	22	Antisense	novelGene_ENSMUSG00000028397.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	355	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCGGCTCGGAGGTG	NA	False	NA	NA	False	NA	NA	NA	74324098	74170155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_74170320_74181041_74181205_74189428_74189607_74199133_74199247_74216675_74216871_74225200_74225250_74229881_74229986_74233746_74233886_74248890_74249084_74251867_74252118_74252789_74253104_74255116_74255225_74261603_74261787_74263677_74263894_74266636_74266714_74275578_74275635_74277656_74277765_74291801_74291987_74295864_74296036_74309611_74309732_74317581_74317677_74323243
11213	chr12	+	3046	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	-25	0	-25	0	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	434	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	17398433	17480096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
11215	chr5	-	3605	18	NNC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	65.3708611001022	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATTTTGAGCCATGCAA	NA	False	NA	NA	False	NA	NA	NA	9211730	9168870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178056_9179179_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
11216	chrX	+	3078	23	NNC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	2	36	junction_11	97.3945392770649	6	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCATCTTCCATTTCTA	555	False	NA	NA	False	NA	NA	NA	20484021	20517121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513632_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
11217	chr1	+	2529	11	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	3	-246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.795138832301	11	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177562	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177979_167180138_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
11218	chr8	+	2528	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	449.04174012557	1	46	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCAGTATGATAGTAGTG	NA	False	NA	NA	False	NA	NA	NA	75836204	75854308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839353_75840886_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
11219	chrX	+	1964	6	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	51	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCTGAGCAGCAAATCC	NA	False	NA	NA	False	NA	NA	NA	49646124	49656538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49647260_49649683_49649883_49651555_49651771_49653689_49653845_49655398_49655605_49656484
11223	chr11	+	3298	8	FSM	ENSMUSG00000020691.14	ENSMUST00000136214.8	2556	8	6	-748	6	748	multi-exon	FALSE	canonical	2	5	junction_1	88.9260183225015	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATCTTTTTGGTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	105017310	105031968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_105018268_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
11224	chr16	+	4247	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	66	577	3	-573	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	86	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTTTTGCCATGGGGTC	8023	False	NA	NA	False	NA	NA	NA	32427803	32451035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
11225	chr12	-	2552	15	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-4924	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	264.400988373836	1723	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87523968	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017_87519187_87523785
11229	chr11	-	3085	10	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	165	-50	intron_retention	FALSE	canonical	3	937	junction_7	79.5665727939368	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGTGGGAAAAGATTG	4680	False	NA	NA	False	NA	NA	NA	6217581	6208968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6215757_6216315_6216407_6216511
11231	chr10	+	3408	12	NIC	ENSMUSG00000015757.11	novel	3471	13	NA	NA	0	-572	intron_retention	FALSE	canonical	3	182	junction_11	34.8541233910046	25	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTTACTTTTTTCTT	1152	False	NA	NA	False	NA	NA	NA	7668684	7698327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
11232	chr7	+	1538	1	FSM	ENSMUSG00000100153.3	ENSMUST00000118909.2	972	1	-8	-558	-8	558	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTGCACATTTAATAATG	NA	False	NA	NA	False	NA	NA	NA	119339342	119340880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_119339300_119340900
11233	chr5	-	2331	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	26	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963451	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938123_135939309_135940506_135963176
11234	chr6	-	3814	18	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	20	644	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	133.650450454065	46	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTAATTTATGTTT	9418	False	NA	NA	False	NA	NA	NA	82751415	82703646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82704436_82705730_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
11235	chr6	-	2397	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	71	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1558.53229854881	4	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGTCAGGTTGGGAGATA	8556	False	NA	NA	False	NA	NA	NA	145021839	144944900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945079_144945155_144946031_144950076_144950158_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
11236	chr14	-	4195	17	Antisense	novelGene_ENSMUSG00000021806.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	126	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCCCCAACTCTCCAGTG	5073	False	NA	NA	False	NA	NA	NA	19856191	19801118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_19801634_19802308_19802616_19813731_19813967_19818277_19819006_19828065_19828213_19828805_19829049_19829601_19829804_19831200_19831431_19839734_19839882_19840344_19840485_19841587_19841717_19847228_19847349_19848461_19848712_19852403_19852626_19853114_19853292_19855373_19855493_19855907
11237	chr5	+	4330	5	NNC	ENSMUSG00000029464.11	novel	2198	7	NA	NA	-23	-2	intron_retention	TRUE	non_canonical	0	0	junction_3	256.252195112549	10	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGTTTGAGGTTTGTA	8016	False	NA	NA	False	NA	NA	NA	122510490	122520963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122510720_122511973_122512083_122516529_122517139_122517487_122517522_122517614
11238	chr11	-	4051	22	FSM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	-14	1857	-14	939	multi-exon	FALSE	canonical	3	682	junction_21	133.681077140662	12	118	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTTGAACGATCTGATAA	NA	False	NA	NA	False	NA	NA	NA	97078721	97052396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
11239	chr5	-	2240	2	Genic_Genomic	ENSMUSG00000080935.4	novel	1293	1	NA	NA	-56	988	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCCAGAAAAAAAAAAAAAAG	1739	False	NA	NA	False	NA	NA	NA	138363870	138361533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_138363387_138363483
11240	chr17	+	2101	15	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-38	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	342.436021135961	1	35	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCTCTAGTCTTAGTAA	NA	False	NA	NA	False	NA	NA	NA	21165710	21186169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185878
11241	chr5	-	3293	7	NNC	ENSMUSG00000109771.2	novel	512	6	NA	NA	52	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	26.0304309094823	583	74	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAAAGTGTTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	110242215	110224002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110224761_110224922_110226077_110226160_110227247_110228349_110228411_110228603_110228731_110234790_110234879_110242196
11242	chr9	-	3013	24	FSM	ENSMUSG00000032580.13	ENSMUST00000182371.8	2986	24	-22	-5	-6	0	multi-exon	FALSE	canonical	3	16	junction_19	139.730783549852	14	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTCTTTATTGAG	9699	False	NA	NA	False	NA	NA	NA	107648201	107617693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
11243	chr11	-	4160	17	NNC	ENSMUSG00000005198.16	novel	6740	29	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.6101787380367	2	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	NA	False	NA	NA	NA	69649010	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69626287_69633220_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
11244	chr5	+	4259	27	ISM	ENSMUSG00000040584.9	ENSMUST00000047753.5	4997	28	600	577	600	-572	3prime_fragment	FALSE	canonical	0	0	junction_8	64.4878778572574	5	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTACATAATTTTAGCC	NA	False	NA	NA	False	NA	NA	NA	8710676	8797998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_8710733_8714545_8714595_8724682_8724843_8733383_8733436_8735220_8735413_8736126_8736299_8744065_8744191_8748485_8748658_8751608_8751723_8751866_8751978_8752152_8752279_8752368_8752573_8752792_8752964_8763186_8763349_8764886_8765064_8765741_8765889_8768978_8769087_8769990_8770069_8773158_8773243_8776772_8776977_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
11245	chr5	-	3513	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	2	5	0	-5	multi-exon	FALSE	canonical	3	925	junction_1	0	1	132	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGTCGGCGGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	135963451	135937267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
11246	chr7	-	2760	20	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	7	-2	intron_retention	FALSE	canonical	0	0	junction_9	444.562033536435	1	39	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143153786	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123565_143123674_143123756_143124408_143125220_143125334_143128249_143128372_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
11247	chr10	+	5483	23	NNC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	-1	-2	intron_retention	FALSE	canonical	2	9	junction_12	73.8842069258231	9	138	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGCTAGTGTGGGATTCT	NA	False	NA	NA	False	NA	NA	NA	128139230	128157220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149613_128149710_128149911_128150048_128150428_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154908_128156116_128156315_128156602
11248	chr4	-	3283	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	15	6	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	4204	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATGTTTGAGTGAAT	2507	False	NA	NA	False	NA	NA	NA	129229148	129200886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
11250	chr4	-	3320	25	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	187	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	79.3819441406896	4	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTTCTGGGTACCTGAC	-14	True	NA	NA	False	NA	NA	NA	41124268	41114440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114693_41116045_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
11251	chr16	-	2869	10	NIC	ENSMUSG00000025613.14	novel	1567	14	NA	NA	-400	110	intron_retention	FALSE	canonical	3	4287	junction_7	416.689273460793	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87288736	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189
11252	chr7	+	1336	8	FSM	ENSMUSG00000019737.15	ENSMUST00000054594.15	1355	8	11	8	11	-2	multi-exon	FALSE	canonical	3	130	junction_4	40.5593543401494	510	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGAGATGTCTGAGAATA	NA	False	NA	NA	False	NA	NA	NA	30014251	30018463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
11253	chr4	+	2370	5	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242735	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	36.1420807370024	17	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147394998	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147661528_147661587_147665716_147665826_147667290_147668611_147668917
11254	chr5	-	3554	4	FSM	ENSMUSG00000109771.2	ENSMUST00000210052.2	3523	4	-30	-1	-30	1	multi-exon	FALSE	canonical	3	35	junction_3	10.7082522694727	57	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGTTCCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	110242316	110224000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110227247_110228349_110228411_110228603_110228731_110242196
11255	chr11	+	2109	12	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4324	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2090.43770180409	24	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGGGGGAACTGTAGA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389424_55390435
11256	chr5	+	3088	17	NNC	ENSMUSG00000014668.16	novel	3159	18	NA	NA	220	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	87.2908213960666	2	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTCTCTTCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	110284010	110319826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294545_110299316_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
11257	chr3	+	3301	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	310	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATGCCTTCATAGTA	NA	False	NA	NA	False	NA	NA	NA	116306718	116343630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
11258	chr15	-	2543	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	1528.4851702112	10	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	377	False	NA	NA	False	NA	NA	NA	36609217	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557_36608740_36609014
11259	chr11	-	2927	19	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-1	-846	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	111.961082303706	3	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGGTATTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	79853217	79825624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839821_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
11260	chr9	-	6177	21	NIC	ENSMUSG00000059890.17	novel	3415	20	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	10.7396461766671	136	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCCTTGTTAGTTCTTC	5351	False	NA	NA	False	NA	NA	NA	44876847	44834428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
11261	chr2	-	4201	31	FSM	ENSMUSG00000027002.14	ENSMUST00000028386.12	4469	31	253	15	253	-9	multi-exon	TRUE	canonical	3	653	junction_15	66.8594213422628	320	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCACACCTTGAATGATT	NA	False	NA	NA	False	NA	NA	NA	80411355	80330870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_80331756_80332568_80332659_80336516_80336627_80337164_80337282_80339055_80339150_80343020_80343102_80343457_80343541_80348238_80348333_80349902_80350001_80350182_80350314_80350715_80350935_80353719_80353852_80354881_80355022_80355902_80356023_80358878_80359012_80360501_80360648_80363988_80364048_80365817_80365900_80368447_80368581_80370462_80370570_80370853_80370951_80371806_80371864_80375333_80375491_80378244_80378294_80379173_80379312_80383480_80383572_80383650_80383794_80384545_80384603_80385041_80385135_80400462_80400574_80411201
11262	chr6	-	3627	5	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	-19	-159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	333.387443524797	4	99	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAACATGTTAGCAACATA	4218	False	NA	NA	False	NA	NA	NA	35516753	35485999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35488283_35488386_35489253_35498834_35498919_35499616_35499731_35516473
11263	chr2	+	3168	4	ISM	ENSMUSG00000037523.14	ENSMUST00000110199.3	3057	7	7054	6	-775	-3	3prime_fragment	FALSE	canonical	3	174	junction_1	7.87400787401181	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAATCTTGTGAGTTCCA	NA	False	NA	NA	False	NA	NA	NA	131083078	131089939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_131083970_131085038_131085193_131087122_131087590_131088283
11265	chr16	+	4787	15	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	25	94	intron_retention	FALSE	canonical	0	0	junction_1	50.1892337426412	3	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGATACTTTTTTTTTCTA	6426	False	NA	NA	False	NA	NA	NA	44167801	44207600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44193029_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
11266	chr10	+	3956	26	NIC	ENSMUSG00000020064.10	novel	3914	26	NA	NA	16	-1	combination_of_known_junctions	FALSE	canonical	3	13	junction_15	92.3267761811274	6	23	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAGTAGTTTCTATGGTT	NA	False	NA	NA	False	NA	NA	NA	63079738	63153656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63126958_63127063_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
11267	chr16	-	2075	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	18	0	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGCCTAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
11268	chr15	-	1919	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	-83	17	-83	-17	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	8	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGCTTCCACTTATTC	NA	False	NA	NA	False	NA	NA	NA	31602033	31590962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
11269	chr2	+	2616	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	-3	0	-3	0	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	272	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34662103	34666543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
11270	chr16	+	3819	10	Antisense	novelGene_ENSMUSG00000003166.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	35	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGCCGTCCTGCTCCGGC	NA	False	NA	NA	False	NA	NA	NA	17658512	17709535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_17660649_17661841_17662073_17662846_17663000_17667454_17667657_17674613_17674795_17675123_17675198_17676134_17676443_17677266_17677391_17690425_17690552_17709251
11271	chr6	+	3569	5	Genic_Genomic	ENSMUSG00000084950.8	novel	815	3	NA	NA	17444	9856	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAGCTCAAGAACTAATG	NA	False	NA	NA	False	NA	NA	NA	87976108	87992309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_87977512_87981151_87981280_87981972_87982194_87989288_87989416_87990619
11272	chr14	-	3213	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	0	25	0	-25	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	547	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCATTAAAGCTCTCACAA	NA	False	NA	NA	False	NA	NA	NA	67246326	67222712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
11273	chr2	-	3315	16	NIC	ENSMUSG00000098950.8	novel	4955	16	NA	NA	-29	-27	combination_of_known_splicesites	FALSE	canonical	2	6	junction_15	83.2064634241569	8	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATCAATAAAATTAATATAT	NA	False	NA	NA	False	NA	NA	NA	155953880	155913791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953825
11274	chr15	-	2619	10	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	813.305615799718	2	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283806	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250604_81259041_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
11275	chr9	-	2557	14	Antisense	novelGene_ENSMUSG00000032042.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGCACTTCCGCTACGAG	NA	False	NA	NA	False	NA	NA	NA	35127918	35122459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124590_35124680_35124829_35125038_35125128_35125228_35125351_35125481_35125570_35125855_35126027_35126111_35126333_35126811_35126924_35127003_35127108_35127231
11276	chr8	-	4388	29	NIC	ENSMUSG00000038102.16	novel	4332	30	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	87	junction_17	20.7789630665837	61	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACATCTGTCGTAAATAC	4053	False	NA	NA	False	NA	NA	NA	47986503	47943166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
11277	chr4	-	2650	15	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	196.22390636355	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	NA	False	NA	NA	NA	48473480	48430857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468994_48469883_48470073_48473265
11278	chr16	+	3417	31	NNC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-55	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	117.346703783655	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTACGTGTGTTCCAGGC	NA	False	NA	NA	False	NA	NA	NA	29398096	29470695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398364_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
11280	chr4	+	2591	7	NNC	ENSMUSG00000028676.18	novel	3058	6	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	665.063823169543	68	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATAATGATTAACTGGA	4712	False	NA	NA	False	NA	NA	NA	135583448	135593121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135591039_135591232_135591303
11281	chr10	-	2952	17	NNC	ENSMUSG00000020130.10	novel	3752	17	NA	NA	38	729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	118.366947983802	5	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATATTCTTTGC	NA	False	NA	NA	False	NA	NA	NA	115087334	115034571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_115035670_115038408_115038498_115038991_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
11282	chr8	+	7461	18	NIC	ENSMUSG00000033624.11	novel	4938	18	NA	NA	121	2705	combination_of_known_junctions	TRUE	canonical	3	13	junction_1	9.5822789149634	76	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCACTTGTGAAATGTCC	NA	False	NA	NA	False	NA	NA	NA	111821407	111866411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111821459_111828492_111828723_111830535_111830670_111839133_111839216_111839318_111839483_111841373_111841496_111841755_111841874_111843313_111843464_111844598_111844792_111847779_111847905_111850376_111850533_111851110_111851245_111852236_111852386_111852847_111852961_111854874_111854970_111856237_111856328_111859508_111859692_111861239
11283	chr10	+	2749	8	NIC	ENSMUSG00000020088.11	novel	2613	7	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	576.708322981313	267	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516079	61529076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_61516193_61519839_61519967_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
11284	chr7	-	2720	19	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-74	-463	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	965.778987382277	1	64	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTATATAGTTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	126165450	126146089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146840_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126158113_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163780_126163874_126163941_126165250
11285	chr9	+	2896	7	NNC	ENSMUSG00000032092.6	novel	3107	6	NA	NA	121	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	200.984797656163	36	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	NA	False	NA	NA	NA	44953843	44965313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175_44964931_44965020
11286	chr2	-	4308	37	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.164335549530545	1	133	18	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCCGTGTAGCCACGCCT	NA	False	NA	NA	False	NA	NA	NA	180998406	180961551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964110_180964302_180964591_180964687_180965154_180965236_180965474_180965536_180970393_180970472_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980887_180980954_180981040_180982291_180982393_180983321_180983366_180988618_180988703_180988811_180988886_180990965_180991101_180991255_180991368_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993151_180993361_180993491_180993593_180993744_180993830_180993971_180994354_180994455_180994542_180994640_180995768_180995974_180996148_180996233_180996798_180996923_180997123_180997345_180997441_180997604_180997714_180997872_180997948_180998050_180998148
11287	chr14	+	3961	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	23	-141	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	99.1548662446781	2	125	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGACAAATGTTGCCTG	9653	False	NA	NA	False	NA	NA	NA	47535748	47560411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868_47559234_47559650
11290	chr13	-	2524	9	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	22	-6631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.416072243844	4	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAACCTTTAAATGGCC	5928	False	NA	NA	False	NA	NA	NA	38178111	38162007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38162707_38162802_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
11293	chr2	+	3429	22	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	140.168994213326	4	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428734	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445523_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
11294	chr2	-	4506	3	FSM	ENSMUSG00000051379.13	ENSMUST00000056760.4	3334	3	-48	-1124	2	-3	multi-exon	FALSE	canonical	3	10	junction_1	29	101	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTGTGTATCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	140513368	140500120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_140503672_140504627_140505380_140513165
11295	chr17	+	3787	8	NNC	ENSMUSG00000005936.20	novel	4196	8	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	183.384729963194	64	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTTGTTATTTAATAGA	NA	False	NA	NA	False	NA	NA	NA	29171416	29188522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625_29185964_29186007
11296	chr5	-	2336	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_14	571.842385877188	2	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGTAGAGTTTT	2869	False	NA	NA	False	NA	NA	NA	138169531	138162851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169453
11297	chr10	+	5931	14	Antisense	novelGene_ENSMUSG00000036676.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	67	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCCGAGCCTTCCCCCA	NA	False	NA	NA	False	NA	NA	NA	100279774	100323160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_100283604_100284683_100284915_100286102_100286273_100287245_100287348_100292909_100293024_100294777_100294900_100296823_100296970_100301881_100302134_100307188_100307364_100307776_100307893_100310236_100310335_100312416_100312637_100313665_100313885_100323023
11298	chr2	-	4937	28	NNC	ENSMUSG00000036893.18	novel	4680	27	NA	NA	0	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.9200743277284	6	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTTCATTATGACAC	9625	False	NA	NA	False	NA	NA	NA	24809591	24680784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_24681469_24681591_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696221_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24737955_24738102_24742672_24742815_24746617_24746739_24748184_24748263_24753234_24753424_24753783_24753921_24767466_24767639_24774157_24774715_24777014_24777082_24809565
11299	chr2	+	4966	19	NIC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-40	-5	intron_retention	FALSE	canonical	3	16	junction_1	53.2354715589029	19	21	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAGTCTGAAGTACATGT	4961	False	NA	NA	False	NA	NA	NA	127267078	127278007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
11300	chr10	+	2413	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_14	446.012812115783	56	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1561	False	NA	NA	False	NA	NA	NA	79690438	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699099_79699620
11302	chr11	+	3276	26	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-16	644	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	225.840828903899	1	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTTAAGGTATGTTTAT	NA	False	NA	NA	False	NA	NA	NA	29080727	29112472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29082844_29082906_29083855_29083927_29084599_29084753_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090015_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
11303	chr1	+	3518	10	NIC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	37	-3	intron_retention	FALSE	canonical	3	593	junction_2	47.3085485449733	6	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTTTTTGCCGTCTTA	NA	False	NA	NA	False	NA	NA	NA	167177596	167196098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
11306	chr9	+	2309	13	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	380.283474310064	8	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGTGTCTTGTATATTC	NA	False	NA	NA	False	NA	NA	NA	25163955	25219866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163996_25176686_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
11307	chr17	-	4694	4	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	8	12	intron_retention	TRUE	non_canonical	0	0	junction_3	95.3636315490461	17	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTCAGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	79202521	79192313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79199066_79199107
11308	chrX	+	2653	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	13	0	-1	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	1582	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5961	False	NA	NA	False	NA	NA	NA	73348616	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
11309	chr1	-	2924	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	824.876723744221	2	87	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	NA	False	NA	NA	False	NA	NA	NA	128287429	128259329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276828_128277071_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
11310	chr6	+	2772	2	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	0	178	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684552	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122686318_122690579
11311	chr11	-	2832	18	FSM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	0	2	0	0	multi-exon	FALSE	canonical	3	102	junction_1	53.1161161918674	838	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3582	False	NA	NA	False	NA	NA	NA	54846948	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
11312	chr6	-	1808	4	FSM	ENSMUSG00000030057.16	ENSMUST00000204596.2	911	4	-37	-860	0	3	multi-exon	FALSE	canonical	3	8336	junction_2	1451.03694722851	257	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828041	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822540_87822637_87822776_87827885
11313	chr14	-	3388	17	FSM	ENSMUSG00000037544.15	ENSMUST00000180299.8	4067	17	-33	712	-3	408	multi-exon	FALSE	canonical	3	355	junction_10	53.3282508971558	17	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCACCTTCTTGAACCAGT	NA	False	NA	NA	False	NA	NA	NA	47655667	47626886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
11314	chr19	-	2802	18	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	2240	-3	1163	3	3prime_fragment	FALSE	canonical	3	1448	junction_15	364.67633656412	1	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTAACTACTTGGATTT	6106	False	NA	NA	False	NA	NA	NA	5343243	5323956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107
11316	chrX	+	3987	12	NIC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	-9	-11	intron_retention	FALSE	canonical	3	338	junction_6	49.5136678684293	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTTTATAACTCGACTAC	NA	False	NA	NA	False	NA	NA	NA	47345729	47371319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
11317	chr6	+	1054	1	NIC	ENSMUSG00000042079.14	novel	515	4	NA	NA	284	-5158	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTTTCGCATGGGTTAT	NA	False	NA	NA	False	NA	NA	NA	117894547	117895601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_117894500_117895600
11319	chr5	+	2044	13	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1254.49893439129	2	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAAGCTACTGGATCAT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864607_129866167_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
11321	chr17	+	3745	32	NNC	ENSMUSG00000067150.7	novel	5081	32	NA	NA	-6	-1306	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	77.9414252168146	1	41	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCCGGCCTCGGTTGTC	NA	False	NA	NA	False	NA	NA	NA	46513736	46553215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546927_46547835_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
11322	chr12	+	3116	7	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	-3	-146	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.593517436687	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGACTGTTTAAAATTAG	NA	False	NA	NA	False	NA	NA	NA	59113704	59120638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59115558_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
11323	chr11	-	3772	24	Antisense	novelGene_ENSMUSG00000020850.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.407862239984646	2	41	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCAGGAATGGCCATGTT	NA	False	NA	NA	False	NA	NA	NA	75400146	75381328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75381368_75381466_75381597_75381676_75381777_75382266_75382457_75382581_75382703_75382783_75382981_75383089_75383202_75383315_75383457_75383803_75383930_75384170_75384381_75384643_75384841_75384956_75385126_75385251_75385379_75385497_75385691_75386057_75386250_75386408_75386645_75386853_75387003_75387166_75387382_75387793_75387904_75390622_75390871_75390972_75391152_75391334_75391472_75391589_75391744_75400046
11324	chr13	-	2819	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	752.244329066192	1	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498361	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480246_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487321_74487690_74487831_74491455_74491618_74492969_74493057_74498264
11326	chr17	-	5220	5	NNC	ENSMUSG00000003929.12	novel	812	5	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.182226450689	110	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTCTGTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	33577855	33548319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33550548_33551965_33554628_33555428_33555484_33555695_33555823_33577707
11327	chr1	-	3321	17	NNC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	4	2	intron_retention	FALSE	canonical	2	4	junction_12	242.840538921635	2	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTAAAGTGTGAAGTTT	NA	False	NA	NA	False	NA	NA	NA	63215887	63182752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204055_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
11329	chrX	+	3755	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.558095067705	1	108	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGGAAGACTTCACTATGA	NA	False	NA	NA	False	NA	NA	NA	95139647	95212145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185475_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95211315_95211383
11330	chr3	+	2703	15	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	-8	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	328.152535773676	76	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTGTTCATAATAAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	157742350	157772694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754179_157755751_157755852_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
11332	chr17	+	2627	22	NNC	ENSMUSG00000067150.7	novel	5081	32	NA	NA	-55	-9110	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	75.9474397556769	4	34	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTGTCTATAGAACCACT	NA	False	NA	NA	False	NA	NA	NA	46513652	46545411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525646_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378
11333	chr18	+	3096	14	NNC	ENSMUSG00000037236.17	novel	3107	15	NA	NA	58	316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	418.11231185585	2	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTCTTGTCGCTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	35695409	35724788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695575_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714974_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
11334	chr9	+	3029	18	Intergenic	novelGene_1040	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGTGGAGAAGGCGCAGG	NA	False	NA	NA	False	NA	NA	NA	53009944	53159385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010566_53028454_53028589_53060801_53060855_53068465_53068635_53071200_53071320_53115359_53115755_53118809_53118857_53120989_53121077_53124535_53124634_53134955_53135047_53136776_53136934_53140422_53140549_53145125_53145318_53146562_53146683_53147698_53147857_53149345_53149477_53151774_53151838_53159117
11335	chr2	+	2695	15	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-309	-1512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.9365310566272	4	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTAGATTTAAGTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	152068449	152122260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068575_152090618_152090732_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152121474_152121557
11336	chr9	-	4651	10	ISM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	15044	0	-2310	0	intron_retention	FALSE	canonical	3	728	junction_4	159.423111232537	50	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64065342	64044425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445
11337	chr6	-	2550	15	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	232.489631105193	2	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGTACGGGGGCTGA	4594	False	NA	NA	False	NA	NA	NA	124801137	124792001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798613_124798848_124798921_124799488_124799683_124800415_124800511_124801094
11339	chr3	+	3322	9	NIC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	249.445384803969	3	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTGTATTAACTCTTT	NA	False	NA	NA	False	NA	NA	NA	41510132	41561130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548237_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904
11340	chr2	-	5017	3	FSM	ENSMUSG00000026788.14	ENSMUST00000028125.12	4998	3	-23	4	4	-4	multi-exon	TRUE	canonical	3	44	junction_1	8.5	140	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGTTGTGTTGTTTTCAC	NA	False	NA	NA	False	NA	NA	NA	33358567	33340302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_33345136_33354925_33354987_33358444
11341	chr11	+	1823	5	ISM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	19062	4	327	-4	3prime_fragment	FALSE	canonical	3	8977	junction_4	840.54312798333	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	183	False	NA	-26	True	NA	NA	NA	75642756	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
11342	chr7	-	603	1	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	-3	-5514	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTACACTGGCAGGGAAA	NA	False	NA	NA	False	NA	NA	NA	30364388	30363785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30363800_30364400
11343	chr7	-	1457	1	NIC	ENSMUSG00000094365.2	novel	3821	25	NA	NA	1243	-21237	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCATCTGACAGAGA	-6	True	NA	NA	False	NA	NA	NA	30363119	30361662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30361700_30363100
11345	chr12	+	2791	10	Antisense	novelGene_ENSMUSG00000113328.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	260	9	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCGACCCGGAACTGCAG	NA	False	NA	NA	False	NA	NA	NA	103374239	103392073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_103374733_103376180_103376316_103377386_103377575_103382452_103382533_103383537_103384050_103384319_103384476_103385219_103385742_103390129_103390569_103390626_103390857_103392037
11346	chr10	+	2657	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	6	-3	intron_retention	FALSE	canonical	3	717	junction_1	87.1665073293636	382	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATTTGCATAAATTGTG	NA	False	NA	NA	False	NA	NA	NA	21870587	21875787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873337_21873796_21873953_21874058_21874149_21874558
11347	chr7	-	3607	3	NIC	ENSMUSG00000030942.9	novel	2689	4	NA	NA	-13	83	intron_retention	FALSE	canonical	3	902	junction_1	12.5	5	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATAGTGTGTTTACTGTA	NA	False	NA	NA	False	NA	NA	NA	119320000	119314232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_119316293_119317244_119318525_119319733
11348	chr8	-	2966	17	Antisense	novelGene_ENSMUSG00000060098.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGTCGAGGCGTAGCGT	NA	False	NA	NA	False	NA	NA	NA	106979100	106937650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_106937714_106939006_106939202_106943873_106943913_106946551_106946700_106953840_106953949_106961476_106961589_106963421_106963666_106963851_106964029_106967811_106967943_106968739_106968879_106969926_106970008_106970430_106970481_106971287_106971377_106973692_106973855_106974978_106975054_106976937_106977099_106978108
11349	chr18	-	3955	16	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	3	-21	combination_of_known_junctions	FALSE	canonical	3	24	junction_15	50.5179396078484	25	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTAATATTTTCCTTCCT	-5	True	NA	NA	False	NA	NA	NA	6135952	6024447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6135803
11350	chr10	-	2485	10	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	329.940436076006	410	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5244	False	NA	NA	False	NA	NA	NA	62322538	62291050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62291129_62291199_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
11351	chr2	+	4691	21	NNC	ENSMUSG00000027655.15	novel	3284	22	NA	NA	8	-8	intron_retention	FALSE	canonical	0	0	junction_9	23.4774359758471	100	50	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGGACATGTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	158636792	158700126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657349_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158669920_158671426_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
11352	chr18	+	3044	11	NNC	ENSMUSG00000024576.15	novel	1222	11	NA	NA	-1	-685	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	774.205889928513	63	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGGAAATCAGTCTCATAA	492	False	NA	NA	False	NA	NA	NA	61688408	61722447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496_61721991_61722280
11353	chr5	-	3460	9	NNC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	73	-933	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	92.9232714393978	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGCAGCTCTGTCCCAT	NA	False	NA	NA	False	NA	NA	NA	74229008	74160319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74189952_74192964_74193179_74197693_74197775_74228910
11354	chr13	+	2870	21	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-30	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	610.925936591335	10	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835636	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861885_49861956_49863054_49863254_49865225_49865317_49883486_49883617_49884893_49885038_49885815_49885969_49887134
11355	chr13	+	3940	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	-64	-2813	0	16	multi-exon	FALSE	canonical	3	53	junction_2	70.4179939898249	589	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTCAAATGATATCCCCT	NA	False	NA	NA	False	NA	NA	NA	34148669	34172442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
11356	chr2	-	2353	16	NNC	ENSMUSG00000074627.12	novel	3460	25	NA	NA	-46512	-14911	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	23	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACGCCGCCACCGGGAC	NA	False	NA	NA	False	NA	NA	NA	157167981	157120951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157121255_157125502_157125696_157131445_157131542_157132454_157132633_157136072_157136147_157137171_157137307_157139299_157139409_157144316_157144433_157152118_157152212_157154395_157154504_157156690_157156892_157158041_157158126_157159862_157159960_157162036_157162114_157163654_157163791_157167628
11357	chr12	+	3759	27	FSM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	245	1599	1	143	multi-exon	FALSE	canonical	3	574	junction_19	50.8148542090207	34	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGGGTTTGTTTCTA	4562	False	NA	NA	False	NA	NA	NA	11316131	11368187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
11358	chr16	+	2920	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	-25	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	33	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTGACTACTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	13598546	13632696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631196_13631880
11359	chr6	+	3044	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-34	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	141.117169598726	611	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCATGTCTAATAACTGAG	5692	False	NA	NA	False	NA	NA	NA	83254340	83281927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307_83281566_83281644
11361	chr5	+	4027	4	NNC	ENSMUSG00000018604.19	novel	4856	8	NA	NA	11	0	intron_retention	FALSE	non_canonical	0	0	junction_2	455.927138428451	998	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	119809093	119822789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_119810470_119812090_119812197_119818679_119819131_119820695
11362	chr11	-	2322	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1169.78376444348	1	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676120_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
11364	chr5	+	1801	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	58	408	58	-408	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTTCAAGCCATATTT	NA	False	NA	NA	False	NA	NA	NA	45650773	45669625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
11365	chr10	-	3173	3	Antisense	novelGene_ENSMUSG00000034560.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	98	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAAAACCATCGTCAGTAA	NA	False	NA	NA	False	NA	NA	NA	83432312	83426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_83427047_83427552_83427647_83430032
11366	chr17	-	2827	10	NNC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	19	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	163.234664074625	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAAAAGCATCACTGAC	NA	False	NA	NA	False	NA	NA	NA	50600608	50586433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_50588351_50591261_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
11368	chr5	-	2871	19	ISM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	379	12	126	-1	3prime_fragment	FALSE	non_canonical	0	0	junction_3	191.217581775962	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTAACTGTGTGCTGTAT	8636	False	NA	NA	False	NA	NA	NA	137305557	137293977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307
11370	chr17	+	3525	14	Antisense	novelGene_ENSMUSG00000099123.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	87	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTACATCTTCTGGGA	NA	False	NA	NA	False	NA	NA	NA	24442206	24468272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24444051_24445447_24445758_24449289_24449378_24450284_24450466_24450758_24450881_24453341_24453505_24456047_24456207_24458820_24458899_24459752_24459857_24460361_24460410_24461106_24461302_24462245_24462318_24463447_24463559_24468222
11371	chr19	-	3374	5	NIC	ENSMUSG00000037916.15	novel	1619	10	NA	NA	1261	-2	intron_retention	FALSE	canonical	3	1340	junction_2	99.9662443027645	2	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGCTTGTCTGGAACTT	7832	False	NA	NA	False	NA	NA	NA	4061400	4057504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4061273_4061345
11372	chr11	+	4312	2	ISM	ENSMUSG00000086841.2_ENSMUSG00000085762.2	ENSMUST00000131787.2	462	5	0	-2592	0	-349	intron_retention	FALSE	canonical	3	3662	junction_1	0	193	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGGACTGAGCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	62493702	62498225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_62493850_62494060
11373	chr17	+	1984	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	732.756136484407	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGAGTTGTGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	29251646	29261867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357_29260781_29260889
11374	chrX	-	4298	12	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	5	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	66.9605780162064	53	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTTACGTTTATCATCT	NA	False	NA	NA	False	NA	NA	NA	156381670	156330833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333183_156333626_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
11375	chr1	+	3270	21	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	27	20	intron_retention	FALSE	non_canonical	0	0	junction_7	153.918354980814	1	72	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTTAAGTGCTTTAT	9397	False	NA	NA	False	NA	NA	NA	87603987	87647436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625273_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637466_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
11377	chr10	-	2596	10	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	438.521534023666	1706	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5244	False	NA	NA	False	NA	NA	NA	62322538	62291050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62315001_62315042_62316336_62316487_62322436
11378	chr16	+	3508	30	NNC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	0	249	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	97.3391780153007	1	40	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTTTAAAAGGCATCAA	NA	False	NA	NA	False	NA	NA	NA	29398195	29470946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416436_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
11380	chr18	+	2966	22	NNC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	45	18	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	271.134811796273	154	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCATAATGCCTTTTTC	10	True	NA	NA	False	NA	NA	NA	3383032	3435403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383173_3384001_3384140_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
11381	chr10	+	2309	6	NIC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-7	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	619.754983844422	4	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173671	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128173829_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
11384	chrX	-	360	1	Intergenic	novelGene_3991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACTTAGTAGATTTATTA	NA	False	NA	NA	False	NA	NA	NA	100249888	100249528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_100249500_100249900
11385	chr9	-	2290	11	NIC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	8	2	intron_retention	FALSE	canonical	3	3415	junction_6	1185.82732301124	18	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996704	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89974456_89975786_89975872_89976407_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
11386	chr14	+	4438	23	FSM	ENSMUSG00000039367.12	ENSMUST00000048657.10	4461	23	23	0	-5	0	multi-exon	FALSE	canonical	3	291	junction_9	29.806850674089	1	86	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCTCATTACTCGCGAC	NA	False	NA	NA	False	NA	NA	NA	20724398	20744920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
11387	chr4	-	3540	9	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	13	4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	175.651465977372	223	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAATGAAGTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	126954904	126941381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126951162_126951387_126952585_126952825_126953302_126953453_126954788
11388	chr16	-	2684	12	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	40	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.957377047388	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGCTCTGACTCTTGCCT	6306	False	NA	NA	False	NA	NA	NA	38370544	38345650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38346022_38346070_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
11390	chr6	-	3103	12	FSM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	125	13	26	-13	multi-exon	FALSE	canonical	3	689	junction_8	114.912830779186	567	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTGAAAAAAATGCTTAAT	NA	False	NA	NA	False	NA	NA	NA	146535970	146503862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
11391	chr2	+	2340	18	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-115	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	763.318061929508	11	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157121230	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157124783_157124882_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
11392	chr8	-	3806	15	FSM	ENSMUSG00000038225.16	ENSMUST00000211400.2	3797	15	6	-15	6	15	multi-exon	FALSE	canonical	3	14	junction_1	36.5959739059155	264	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGTTTCTCGTGTT	NA	False	NA	NA	False	NA	NA	NA	47070229	47028613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
11393	chr16	-	4116	20	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	57	-20	intron_retention	FALSE	canonical	2	5	junction_15	38.7685082240328	24	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAGAGATGACTTTCATA	NA	False	NA	NA	False	NA	NA	NA	10994148	10954475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
11394	chrX	-	3147	7	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	101	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	81.2617512869506	48	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	NA	False	NA	NA	NA	12539806	12521117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_12523275_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
11395	chr8	-	3081	8	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	818.335194034766	132	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAATTGTTTGGGATAT	NA	False	NA	NA	False	NA	NA	NA	94763660	94742123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743925_94745854_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
11396	chr8	-	2172	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	57	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	875.091675197519	6	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTATGGTACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	26337665	26306909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308629_26309711_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
11397	chr19	-	2549	21	NNC	ENSMUSG00000024942.20	novel	3062	22	NA	NA	40	-468	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	51.2800887284724	7	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGGCAGGGGCAGGGGC	2637	False	NA	NA	False	NA	NA	NA	6065193	6039041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6047709_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
11401	chr8	-	2787	5	NIC	ENSMUSG00000045636.17	novel	2686	4	NA	NA	93	52	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	39.3533670732251	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTATCTGAAGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	41586662	41503084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41503154_41509571_41509722_41529268_41529465_41535650_41537878_41586517
11402	chr6	+	3078	8	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-35	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	277.031126225843	3	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGTTGCTGTTGTGTTTT	5402	False	NA	NA	False	NA	NA	NA	125108836	125121712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114107_125119340
11403	chr19	+	3629	11	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-4	75	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	89.3263678876512	124	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACGGATTCTGCATTGAAT	NA	False	NA	NA	False	NA	NA	NA	10502625	10525092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509621_10509699_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
11404	chr12	-	2311	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-16	-2328	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	439.71993996179	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGGCTTGTGTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	13299180	13269301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269461_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
11405	chr3	+	2290	17	FSM	ENSMUSG00000027680.16	ENSMUST00000001620.13	2459	17	159	10	-3	-5	multi-exon	FALSE	canonical	3	36	junction_14	394.615947591769	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTATAGGAAATGTTATT	4853	False	NA	NA	False	NA	NA	NA	34074250	34123481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34119122_34119204_34122309_34122402_34123065
11406	chr1	-	3859	11	NNC	ENSMUSG00000022995.17	novel	11229	14	NA	NA	97	1438	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	120.091673316679	1	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGTTTCTTGTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	181751232	181730526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181746995_181747052_181747195_181749222_181749334_181751124
11407	chr9	+	386	1	Genic_Genomic	ENSMUSG00000032399.9	novel	NA	NA	NA	NA	-375	-2820	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGCCGGGTAGAGAGG	NA	False	NA	NA	False	NA	NA	NA	64080281	64080667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_64080300_64080700
11408	chr7	-	3370	20	NIC	ENSMUSG00000038644.15	novel	3302	26	NA	NA	-45	-539	intron_retention	FALSE	canonical	3	875	junction_19	129.228672752976	1	99	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGATCATTGGTGCTGCT	NA	False	NA	NA	False	NA	NA	NA	44198202	44183858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44184141_44184440_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
11409	chr11	+	4814	15	Antisense	novelGene_ENSMUSG00002076008.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	204	25	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGCGGGCAAGCTTCCG	NA	False	NA	NA	False	NA	NA	NA	104224326	104360269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_104226034_104226274_104226524_104227044_104227160_104227374_104227433_104228951_104229076_104233190_104233338_104234316_104234502_104241313_104241481_104247511_104247703_104248306_104248427_104259507_104259607_104269512_104269652_104314746_104316120_104358464_104358579_104360243
11410	chrX	+	2100	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1090.72251434807	24	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473296	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483138_100485298_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
11411	chr13	+	2033	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	750.811197669197	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTCTTGGTATTGAGTG	NA	False	NA	NA	False	NA	NA	NA	3588134	3615817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604468_3606320_3606513_3606925_3607058_3609991_3610092_3611865_3611935_3611992_3612038_3614539_3614685_3614858_3614914_3614995
11412	chr5	-	3225	14	NIC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	56	-3355	combination_of_known_splicesites	FALSE	canonical	1	5	junction_7	53.6261439375373	56	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACCAGAGCCCTCCCT	1005	False	NA	NA	False	NA	NA	NA	36987941	36969510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
11414	chr8	+	3612	14	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	44986	-337	intron_retention	FALSE	non_canonical	0	0	junction_4	280.641425073804	1	132	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACATTCTAACGGGAAAAA	1424	False	NA	NA	False	NA	NA	NA	107375760	107396541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107375857_107380138_107380283_107380395_107380552_107383455_107383561_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
11415	chr5	+	4295	15	FSM	ENSMUSG00000029613.16	ENSMUST00000100487.6	4325	15	30	0	-13	0	multi-exon	FALSE	canonical	3	166	junction_1	19.8185647866863	239	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGACACTGTTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	143803572	143841069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
11416	chr3	+	2748	7	NNC	ENSMUSG00000038393.15	novel	2795	8	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.394203331401	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	96465275	96469182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96465819_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
11417	chr11	+	4759	33	Antisense	novelGene_ENSMUSG00000065262.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	237	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAGGCAAAGAAAGTTA	NA	False	NA	NA	False	NA	NA	NA	98883787	98913258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_98884132_98884578_98884762_98885032_98885235_98886070_98886205_98886506_98886550_98886675_98886802_98887556_98887699_98888651_98888746_98889987_98890176_98891596_98891677_98891798_98891953_98892169_98892268_98893699_98893872_98894337_98894534_98894651_98894787_98894937_98895170_98896828_98896980_98897787_98897906_98898004_98898154_98900368_98900521_98900613_98900725_98900855_98900962_98901297_98901426_98901731_98901889_98902845_98902985_98905239_98905381_98905515_98905615_98905710_98905888_98906854_98907067_98907255_98907352_98909619_98909752_98912525_98912603_98913167
11420	chr14	-	2747	10	NIC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	38	-7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	321.613447909977	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGCATTTCATTGTTCAG	6382	False	NA	NA	False	NA	NA	NA	66071405	66056493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
11421	chr9	+	7170	16	FSM	ENSMUSG00000041440.19	ENSMUST00000085217.12	2815	16	60	-4415	-10	-3	multi-exon	FALSE	canonical	3	48	junction_1	8.15843122174846	98	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTTTTCATATGCATA	NA	False	NA	NA	False	NA	NA	NA	96001474	96066658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973
11422	chr10	+	2856	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	68	2	-8	-2	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	1	93	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173670	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
11423	chr9	-	2847	22	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	81.9443149236072	1	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854019	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828368_61831955_61832094_61832253_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
11424	chr2	+	2946	16	NNC	ENSMUSG00000027067.17	novel	2721	17	NA	NA	15	-3	intron_retention	FALSE	canonical	0	0	junction_7	414.823121609949	1	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAACGATGTCCTTATGT	NA	False	NA	NA	False	NA	NA	NA	84867813	84877447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871794_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
11425	chr10	+	4882	3	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	1	-275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75	225	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAATTTCATTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	75868488	75878793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75868584_75869447_75869509_75874067
11427	chr6	-	2187	11	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	-6	intron_retention	TRUE	canonical	1	4	junction_1	2179.4115467254	14	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAATTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51446825	51438109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439081_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
11428	chr16	+	3349	29	NIC	ENSMUSG00000038084.17	novel	3153	29	NA	NA	-7	-13	combination_of_known_junctions	FALSE	canonical	3	139	junction_4	94.210332420037	15	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCTAGCAACTGGCAAAAT	NA	False	NA	NA	False	NA	NA	NA	29398188	29449209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901
11429	chr8	+	3171	13	NIC	ENSMUSG00000006273.15	novel	2825	14	NA	NA	-2	-6	intron_retention	FALSE	canonical	3	1214	junction_11	85.2706068284312	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTACCTGAAATGACTCT	NA	False	NA	NA	False	NA	NA	NA	69541417	69566357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_69541581_69548871_69548928_69554016_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
11430	chr6	+	2897	17	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	303.224693657608	7	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	87864909	87890577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87872951_87884915_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
11431	chr4	-	2693	5	NNC	ENSMUSG00000040025.18	novel	4129	5	NA	NA	6	224	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	465.18840269293	2	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCCAGTACCACTTAGTA	NA	False	NA	NA	False	NA	NA	NA	131939396	131913376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_131914259_131931442_131932637_131932692_131933027_131938062_131938143_131939193
11432	chr10	-	2232	10	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-13	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	652.71603490509	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	8732	False	NA	NA	False	NA	NA	NA	128401816	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398761_128399455_128399575_128401608
11433	chr10	+	2708	11	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-17	1	intron_retention	FALSE	canonical	0	0	junction_7	514.760769678498	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTCCCTGAGCCCTTC	723	False	NA	NA	False	NA	NA	NA	79694588	79700194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698249_79698376_79698486_79698704_79698811_79698890_79698978
11434	chr12	+	4430	29	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	0	-265	combination_of_known_splicesites	FALSE	canonical	3	24	junction_1	53.2768089073186	31	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAACCAAAGTGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	116369040	116424966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_116369112_116369321_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
11435	chr8	+	2535	15	ISM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	25	7135	11	519	5prime_fragment	FALSE	canonical	3	1913	junction_1	395.344463598466	24	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTAACTTGGCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	111760558	111777161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976
11437	chr17	+	2289	6	Intergenic	novelGene_49	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	87.2041283426421	2	17	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGATATCCCCAAGTA	NA	False	NA	NA	False	NA	NA	NA	17399590	17426642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17414481_17414581_17422956_17423084_17423325_17423387_17424679_17424928_17425011
11438	chr11	+	794	7	ISM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	4497	1831	-1331	134	internal_fragment	FALSE	canonical	3	695	junction_6	109.600790751405	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACAAACAGTACTGCAGC	NA	False	NA	NA	False	NA	NA	NA	80278625	80285243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111
11441	chr5	-	3639	5	NNC	ENSMUSG00000109771.2	novel	3523	4	NA	NA	-30	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	26.5082534317144	63	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGTTCCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	110242316	110224000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110227247_110228349_110228411_110228603_110228731_110234790_110234876_110242196
11442	chr17	-	2700	8	FSM	ENSMUSG00000015120.16	ENSMUST00000173084.8	1286	8	-14	-1400	-14	1395	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	259	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACTGCAGCCCTCGGG	4733	False	NA	NA	False	NA	NA	NA	25492371	25479494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
11443	chr10	+	4162	20	ISM	ENSMUSG00000003226.8	ENSMUST00000003310.7	9608	29	-32	16825	-30	16558	5prime_fragment	TRUE	canonical	3	152	junction_18	19.0043004318246	34	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGCTGCAACTGCTAAG	NA	False	NA	NA	False	NA	NA	NA	58282711	58313353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_58282874_58287805_58287874_58289133_58289246_58290394_58290548_58291040_58291272_58291630_58291777_58293413_58293607_58296339_58296428_58297657_58297868_58299640_58299823_58299904_58300081_58300226_58300351_58300886_58301049_58301265_58301404_58301484_58301632_58302936_58303117_58303211_58303296_58306448_58306585_58311065_58311161_58311978
11444	chr11	-	4144	13	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	2240	junction_1	255.007298370502	6	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTTCTTTGGTCCTTGGCT	5937	False	NA	NA	False	NA	NA	NA	100510439	100473648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100489555_100490010_100490136_100492553_100492643_100510353
11445	chr19	-	3497	6	NIC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	21	intron_retention	FALSE	canonical	3	2610	junction_5	238.24390863147	4	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGACTTTCATCCTTCC	NA	False	NA	NA	False	NA	NA	NA	8691236	8684929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8685459_8685557_8686510_8686593_8686775_8686913_8687148_8689197_8690268_8690705
11446	chr11	+	3006	15	NNC	ENSMUSG00000020677.8	novel	3194	15	NA	NA	97	-49	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	87.8508708562646	5	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAGGCTTCATTTAAA	NA	False	NA	NA	False	NA	NA	NA	83832984	83853865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_83833091_83834068_83834226_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
11447	chr2	-	3760	4	NIC	ENSMUSG00000027547.18	novel	3741	4	NA	NA	-159	-3	combination_of_known_junctions	FALSE	canonical	3	42	junction_2	278.111488435843	48	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCGGGCTTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	168607325	168590254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_168592381_168594373_168594661_168597685_168598721_168607013
11448	chr13	-	3865	28	Fusion	ENSMUSG00000118423.2_ENSMUSG00000042590.18	novel	2484	22	NA	NA	17	-13	multi-exon	FALSE	canonical	0	0	junction_11	151.533623191277	12	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGGAAAAATGGGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	107073436	106970236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_106971345_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
11449	chr4	-	2734	16	Antisense	novelGene_ENSMUSG00000028672.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	50	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCGCCCCCCTCTTAACA	NA	False	NA	NA	False	NA	NA	NA	135689924	135648057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_135648462_135650277_135650411_135652857_135652995_135657206_135657314_135660207_135660409_135661998_135662199_135664237_135664332_135666382_135666512_135677855_135677943_135679679_135679785_135681162_135681263_135682896_135683045_135686031_135686093_135687279_135687474_135688090_135688219_135689418
11450	chr15	+	3695	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	60	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	229.209700350343	1	165	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTAATGTTGCAGTTT	NA	False	NA	-34	True	NA	NA	NA	101982358	102005606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001426_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
11451	chr1	-	4052	21	NIC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_20	45.2731708631061	129	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	NA	False	NA	NA	NA	128030756	127881920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128030704
11452	chr8	-	2822	10	NNC	ENSMUSG00000031701.7	novel	2919	9	NA	NA	13	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.188116273695	3	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGTTCCTCAGCATTC	NA	False	NA	NA	False	NA	NA	NA	86281960	86264267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_86265800_86265877_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
11453	chr15	-	3421	16	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	-11	0	intron_retention	FALSE	canonical	3	159	junction_14	183.330981803101	14	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	99549481	99518376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99519346_99520099_99520206_99521449_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
11454	chr6	-	3483	14	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	0	-971	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	401.289106188496	9	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGGGAATTTGTTTAAAGCA	NA	False	NA	NA	False	NA	NA	NA	148113520	148081547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092416_148092522_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104624_148106273_148106383_148108030_148108174_148113467
11455	chr11	+	2220	13	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCTCAGCGCGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	106672411	106679972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296_106673522_106674786_106674845_106674926_106674987_106675237_106675350_106675704_106675879_106675961_106676118_106676217_106676268_106677053_106677189_106677276_106677371_106677734_106677899_106679096_106679287_106679843
11456	chr2	-	1794	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	5	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	15	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACATCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	152185903	152179350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179566_152179739_152180608_152181634_152181928_152184956_152185248_152185776
11457	chr3	+	3189	8	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	569.131023973373	3	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836588	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491_95853057_95853107
11458	chr12	+	3196	12	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.82263630907	175	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCTTTTCTGATTGTTC	NA	False	NA	NA	False	NA	NA	NA	102724234	102743965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952_102742414_102742468
11459	chr12	+	4220	20	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	12	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	172.901393767543	1	96	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGAGATGCTTTCTTTG	3998	False	NA	NA	False	NA	NA	NA	83679042	83729850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715077_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
11460	chr3	+	2630	17	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-2	-374	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	411.51556300309	2	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAATAAACTTTGATCT	4847	False	NA	NA	False	NA	NA	NA	34074244	34124097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093715_34095207_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116086_34118276_34118469_34122309_34122402_34123065
11461	chr6	+	1718	11	FSM	ENSMUSG00000030007.9	ENSMUST00000204592.3	1544	11	-73	-101	0	-92	multi-exon	FALSE	canonical	0	0	junction_3	1848.47877997017	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5115	False	NA	NA	False	NA	NA	NA	85429000	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
11462	chr19	+	3012	13	NNC	ENSMUSG00000024949.18	novel	4353	13	NA	NA	7	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	337.498672836897	564	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGGTCCGTTTCTTTTCTT	841	False	NA	NA	False	NA	NA	NA	6413958	6427228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424871_6425899
11463	chr10	+	3668	9	Genic_Genomic	ENSMUSG00000085111.4	novel	483	3	NA	NA	9864	7264	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCTTCATGGCTGGCAG	NA	False	NA	NA	False	NA	NA	NA	85774501	85789334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_85774983_85777761_85777882_85778350_85778463_85779072_85779261_85779677_85779855_85782054_85782217_85783042_85783198_85785329_85785485_85787216
11464	chr12	-	4598	9	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	-48	-14	intron_retention	FALSE	canonical	3	442	junction_4	59.9404652551179	13	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTAATGTTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	69771595	69737220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
11465	chr4	+	1328	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	219	4	-1	-4	multi-exon	FALSE	canonical	3	677	junction_4	47.0558179187229	2260	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATACTTGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	107747314	107754995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
11466	chr5	-	2981	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	32	11	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	49	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8289	False	NA	NA	False	NA	NA	NA	137305904	137293976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
11467	chr15	-	2101	15	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	3	-3	combination_of_known_junctions	FALSE	canonical	3	103	junction_14	427.115718201396	54	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2764	False	NA	NA	False	NA	NA	NA	77854994	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854658
11468	chr11	+	2344	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	152	1	-73	-1	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	2208	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGCCGGCGTGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	76836481	76878204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
11469	chr14	+	1124	8	NNC	ENSMUSG00000021957.8	novel	2438	11	NA	NA	128	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	945.948309413169	5	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAATCCTCAGACTCT	NA	False	NA	NA	False	NA	NA	NA	30281774	30295573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30281823_30282543_30282715_30287404_30287637_30288898_30289018_30290120_30290199_30293129_30293203_30294164_30294288_30295293
11470	chr11	-	2508	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	-51	19	-51	-3	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	128	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTACATTGCCGATAT	924	False	NA	NA	False	NA	NA	NA	79145548	79130216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
11471	chr10	-	3582	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	-52	4	-52	-4	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	298	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGCTGCTGAGTTCAT	NA	False	NA	NA	False	NA	NA	NA	40759359	40707620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
11472	chr7	-	3289	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	48	9	28	-9	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAGATTTGTATCTGT	NA	False	NA	NA	False	NA	NA	NA	113853898	113814802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
11474	chr7	-	1825	16	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.249443825784929	2	62	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAGATGCAGCAGTGGGG	9273	False	NA	NA	False	NA	NA	NA	13045351	13030151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13030321_13030644_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034979_13035313_13035405_13037107_13037227_13037731_13037796_13039833_13039976_13040135_13040215_13041439_13041600_13042396_13042444_13043032_13043179_13044931_13045035_13045125
11476	chr5	+	1912	11	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-13	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	795.227319701732	31	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650832	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45655835_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
11477	chr2	+	1227	1	Intergenic	novelGene_2753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCTCCCAGCTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	156628052	156629279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_156628100_156629300
11478	chr6	+	2072	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112580.8	2011	5	-61	0	15	0	multi-exon	FALSE	canonical	3	367	junction_1	1758.10842953442	36	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684462	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100
11479	chr13	+	1969	10	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	623.586480582631	6	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588127	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601055_3606363_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
11480	chrX	-	6064	23	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	27	-1179	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	38.0986106338723	18	182	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTTTTGGTGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	49724111	49645806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49647262_49651556_49651832_49653689_49653845_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662229_49666747_49666902_49669457_49669827_49670279_49670434_49673555_49673725_49680801_49680963_49684337_49684493_49685306_49685449_49687010_49687166_49689620_49689776_49692247_49692487_49694884_49695040_49701581_49701728_49709551_49709682_49715313_49715387_49719767_49719873_49723821
11481	chr9	+	3006	20	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_8	125.2676690917	2	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAATCCCTCTGGCGTCT	NA	False	NA	NA	False	NA	NA	NA	108385257	108393125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388524_108388616_108388730_108388818_108389681_108389978_108390058_108390168_108390264_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
11482	chr17	-	3065	22	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	9	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	206.881816909559	25	39	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGCCTGTGGGGTGCTTC	NA	False	NA	NA	False	NA	NA	NA	36280644	36267708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274190_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
11483	chr9	+	3878	9	NNC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-81	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	71.1722163136712	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	NA	False	NA	NA	NA	19533316	19561027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997_19559514_19559675
11484	chr19	-	4787	13	Intergenic	novelGene_1284	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTTCCCCCGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	45510999	45352189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_45352325_45411570_45411678_45444969_45445048_45459451_45459544_45491370_45491601_45496117_45496309_45501082_45501179_45501823_45501962_45502444_45502562_45504292_45504545_45505451_45505570_45507244_45507358_45507879
11485	chr4	+	4431	12	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	4354	-3	intron_retention	FALSE	canonical	3	84	junction_11	75.3565628877003	5	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTCTTGTGTGTATCCT	4379	False	NA	NA	False	NA	NA	NA	11563325	11615802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11612439_11615442
11486	chr12	+	2488	8	NNC	ENSMUSG00000116627.2	novel	1230	4	NA	NA	13308	-21988	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	30.7338807925623	119	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTGTATTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	21053844	21068441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21053965_21062987_21063115_21063316_21063378_21065030_21065273_21065525_21065974_21066391_21066660_21067178_21067983_21068023
11488	chr7	-	2476	5	ISM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	14	0	-14	intron_retention	FALSE	canonical	3	15796	junction_2	1010.6850090409	46	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTTAAGTGTGTACGAT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414
11490	chr4	+	2615	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-2	2578	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	124.355086345513	4	82	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576871	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597630_147599053
11491	chr7	+	3872	18	NNC	ENSMUSG00000030852.19	novel	2934	13	NA	NA	5081	-7	intron_retention	FALSE	canonical	2	11	junction_2	100.680315611132	28	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATGCATGTTTC	NA	False	NA	NA	False	NA	NA	NA	130203128	130366447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130203462_130203566_130203668_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
11492	chr6	-	2348	2	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	69	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCACTTGGGACACTCAA	7473	False	NA	NA	False	NA	NA	NA	122691591	122688421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122688759_122689580
11493	chr9	+	1235	5	FSM	ENSMUSG00000032264.10	ENSMUST00000215706.2	1272	5	-200	237	-31	-237	multi-exon	FALSE	canonical	3	254	junction_4	30.2189923723476	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATATTTCTTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	48966881	48973068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354
11494	chr9	-	3360	29	NNC	ENSMUSG00000004099.17	novel	607	9	NA	NA	17	-6858	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	203.676652003681	136	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGAAGTGACCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	20864124	20825674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20825917_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
11495	chr15	+	4635	24	NNC	ENSMUSG00000015002.19	novel	5215	23	NA	NA	0	-37	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	118.79218880458	6	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAGCAATAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	65658896	65745628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001_65744981_65745515
11497	chr10	+	2568	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_6	566.096809417909	1	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTCCCTGAGCCCTTC	1621	False	NA	NA	False	NA	NA	NA	79690498	79700194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695551_79695710_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698331_79698581_79698704_79698811_79698890_79698978
11498	chr7	+	3697	16	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-116	0	intron_retention	FALSE	canonical	3	48	junction_1	73.3327272702229	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGTGTGGCTGTGAGTTA	NA	False	NA	NA	False	NA	NA	NA	130247843	130366515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
11499	chr11	-	1912	11	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	2018	1191	-464	2	3prime_fragment	FALSE	canonical	3	3830	junction_8	172.643447602277	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	NA	False	NA	10	True	NA	NA	NA	106677340	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273
11500	chr6	+	1991	12	NNC	ENSMUSG00000030007.9	novel	789	4	NA	NA	88	-92	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1795.07751622491	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5276	False	NA	NA	False	NA	NA	NA	85429161	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429418_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
11501	chr11	-	2968	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9034	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	570.343973862011	1	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	390	False	NA	NA	False	NA	NA	NA	106615254	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586836_106588073_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
11502	chrX	-	2965	2	Genic_Genomic	ENSMUSG00000083327.2	novel	2406	1	NA	NA	-206	572	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATAAGAACAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103392046	103388862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_103391022_103391240
11503	chr13	-	4869	25	NNC	ENSMUSG00000041685.17	novel	5122	26	NA	NA	1	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	64.0389963659297	293	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATTGACTTTGTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	98951715	98859913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98862285_98862568_98862734_98866696_98866762_98867284_98867485_98868584_98868718_98869025_98869182_98871526_98871639_98879918_98880049_98882308_98882413_98884723_98884813_98886359_98886403_98888414_98888440_98891583_98891761_98892072_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
11504	chr11	-	2374	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	564.342045781349	4	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239136	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191274_75191702_75192230_75193493_75193581_75196933_75197042_75197940_75198040_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
11505	chr14	+	2063	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1269	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2988.54724573663	2	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGGCAGGGTGCACG	NA	False	NA	NA	False	NA	NA	NA	63359964	63380581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63369559_63369725_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
11506	chrX	+	3538	7	NNC	ENSMUSG00000015291.11	novel	3696	9	NA	NA	-11	-75	intron_retention	FALSE	non_canonical	0	0	junction_4	304.964296635233	1	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAATGTGTCCCCTTCCC	6195	False	NA	NA	False	NA	NA	NA	73348850	73355389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350848_73351326_73351868_73352681_73353741_73353995
11507	chr9	+	3665	9	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-662	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	94.0634759085587	619	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTCCACGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	110782204	110813134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
11508	chr2	+	3137	28	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	-5046	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	432.639729801216	1	100	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGGTGTCTGGTGTCTG	2766	False	NA	NA	False	NA	NA	NA	146866425	146919919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146866521_146866634_146866747_146867114_146867253_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871443_146871549_146871646_146871705_146871788_146871897_146876758_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884794_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
11509	chr11	-	2256	7	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	0	-5	intron_retention	FALSE	canonical	3	9657	junction_6	1580.04345931792	68	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGTTTGGGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	69563141	69557767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558938_69559021_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
11510	chr1	+	2511	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	-8	4	-8	-4	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	1882	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4878037	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
11511	chr5	+	4390	34	FSM	ENSMUSG00000036928.15	ENSMUST00000048028.15	4211	34	-179	0	107	0	multi-exon	FALSE	canonical	2	72	junction_1	21.1857845161499	216	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	NA	False	NA	NA	NA	138278608	138310655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
11512	chr17	-	3002	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-1037	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	390.163427296819	1	66	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAATATTACTGTGCTTCA	8756	False	NA	NA	False	NA	NA	NA	24470302	24442208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443887_24444052_24445448_24445577_24445667_24445738_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462216_24462321_24463453_24463561_24468224_24468367_24470268
11513	chr10	-	2400	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-13	-1	combination_of_known_junctions	FALSE	canonical	3	63	junction_7	346.299504675903	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAACTTAAGTTTGTAGT	5244	False	NA	NA	False	NA	NA	NA	62322538	62291056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62322436
11514	chr9	+	3474	8	NNC	ENSMUSG00000032495.9	novel	3657	9	NA	NA	-364	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	98.1918156113901	956	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAGCCTTTGCGTAAA	NA	False	NA	NA	False	NA	NA	NA	110789537	110813113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697_110812423_110812637
11515	chr4	-	2497	4	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	3284	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	225.71712877454	1	84	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147723669	147696396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147703015_147723549
11516	chr1	-	6295	10	NIC	ENSMUSG00000026135.18	novel	6480	9	NA	NA	0	-15	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	16.1734426426033	96	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGGATCCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	74627187	74605599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74619087_74624542_74624857_74626722_74626911_74627083
11517	chr11	+	3317	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	26	16	26	-16	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	3282	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATTTAAATTCTTAAAC	NA	False	NA	NA	False	NA	NA	NA	109541772	109560466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
11518	chr13	-	3130	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	1187	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	237.004219371723	175	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTAAGAGATACTGTTT	NA	False	NA	NA	False	NA	NA	NA	34314327	34309543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34310273_34310318_34312390_34312912_34312966_34313228_34313338_34314159
11519	chr10	+	2408	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-2	3	intron_retention	FALSE	non_canonical	0	0	junction_12	465.184095875553	2	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1587	False	NA	NA	False	NA	NA	NA	79690464	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698642_79699339
11521	chr15	-	2193	16	ISM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	6383	1362	-1012	342	3prime_fragment	FALSE	canonical	3	2899	junction_10	226.599342943051	2	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCAAGACCTCTGTCCTC	6311	False	NA	NA	False	NA	NA	NA	11393368	11383748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242
11522	chr16	-	2886	10	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18863	6471	multi-exon	FALSE	non_canonical	0	0	junction_1	0	313	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGACGTGGCAGCGCAC	NA	False	NA	NA	False	NA	NA	NA	38412525	38383213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38383493_38384476_38384661_38393412_38393638_38396103_38396187_38399003_38399054_38402327_38402487_38405535_38405879_38406580_38406771_38408544_38408664_38411271
11523	chr9	+	3556	10	NIC	ENSMUSG00000031939.17	novel	3126	10	NA	NA	16	-2	intron_retention	FALSE	canonical	3	69	junction_1	192.054647572822	42	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCTTTTATAGTTTGTA	9088	False	NA	NA	False	NA	NA	NA	15217525	15228270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15226428_15226678_15226737_15228184
11524	chr8	-	2920	8	NIC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-87	-247	intron_retention	FALSE	canonical	3	1106	junction_7	93.9178972750744	8	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTCCCTATTGTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	85573650	85568725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85572695_85572878_85572981_85573336
11525	chr18	+	2581	22	NNC	ENSMUSG00000024271.9	novel	3466	22	NA	NA	0	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	195.751520035917	7	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATTGAGTTTCCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	24737017	24771707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767499_24767954_24768066_24771450
11526	chr18	+	3258	10	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	55	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	588.024564868585	1570	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATCTGTTGTCTTATAA	NA	False	NA	NA	False	NA	NA	NA	67908099	67928552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219_67928085_67928209
11528	chr7	-	3514	20	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	38	-5	intron_retention	FALSE	canonical	3	117	junction_15	20.7668764597553	20	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTTCTGAGCCTCATG	NA	False	NA	NA	False	NA	NA	NA	140697648	140681142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
11529	chr6	-	4303	7	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	1471	-1	intron_retention	FALSE	canonical	3	933	junction_2	2443.10940879309	1	175	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTACTTGGTGTAATGC	NA	False	NA	NA	False	NA	NA	NA	51445281	51438104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443686_51443885_51444033_51444164
11530	chr13	-	2786	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	494.158184415163	3	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498338	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476482_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
11531	chr4	-	2464	13	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	365.911675362603	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779653	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756779_122758373_122758552_122758958_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
11533	chr4	+	3059	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-6	-45	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	533.493960186576	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAAATTAAGCAAAGATGC	4700	False	NA	NA	False	NA	NA	NA	135583436	135593081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135591039
11534	chr14	+	2843	14	Antisense	novelGene_ENSMUSG00000077797.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCGGGGCCGGGCCGAGT	1518	False	NA	NA	False	NA	NA	NA	30734397	30741016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30734590_30734677_30734749_30735125_30735216_30735387_30735523_30735609_30735754_30736007_30736184_30736545_30736633_30736860_30736984_30737231_30737345_30738281_30738414_30738785_30738864_30739012_30739127_30739234_30739369_30739762
11535	chr11	-	2029	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	34	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCACTGATGTCTCAGGT	6426	False	NA	NA	False	NA	NA	NA	102076052	102053328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054550_102054700_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
11539	chr3	-	4336	4	Fusion	ENSMUSG00000038975.15_ENSMUSG00000065463.3	novel	654	7	NA	NA	-9	-2	intron_retention	FALSE	canonical	3	638	junction_2	160.636926708096	2	112	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTTAGTCTTCTGAGTC	6169	False	NA	NA	False	NA	NA	NA	153618577	153613092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_153613842_153614426_153615236_153615700_153615799_153615897
11540	chr12	+	4682	14	NIC	ENSMUSG00000048285.10	novel	4662	14	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	34.6862522431374	157	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	743	False	NA	NA	False	NA	NA	NA	70872243	70949008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924014_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
11542	chr13	-	2398	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	7	-146	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.553051610888	295	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGATGACTTACATTTT	NA	False	NA	NA	False	NA	NA	NA	9046079	9022661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023285_9024223_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
11543	chr10	-	2596	21	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	55	-946	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	261.810518314295	5	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAACATGACCAGAGGAGT	NA	False	NA	NA	False	NA	NA	NA	77845506	77823726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825543_77825997_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
11544	chrX	-	4249	3	FSM	ENSMUSG00000087403.10	ENSMUST00000148326.8	584	3	11	-3676	11	4	multi-exon	FALSE	canonical	3	54	junction_1	13.5	127	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTGACTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	151110480	151077819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151081871_151110156_151110236_151110361
11545	chr18	-	3267	6	NIC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	3	-1	intron_retention	FALSE	canonical	3	1055	junction_1	148.022430732643	8	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTCTTTTGTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	38472026	38460603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_38462027_38463538_38463714_38465020_38466390_38468068_38468171_38471143_38471276_38471960
11547	chr2	+	2495	7	NIC	ENSMUSG00000027479.15	novel	483	4	NA	NA	-3	-4751	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	426.443984858765	647	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCTGTCTTCTGAAATG	NA	False	NA	NA	False	NA	NA	NA	153583518	153610479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_153583575_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
11548	chr8	+	3769	21	NIC	ENSMUSG00000018796.14	novel	3429	21	NA	NA	2	-9	combination_of_known_junctions	FALSE	canonical	2	14	junction_1	91.1095494446109	6	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGGAGAATGTCTTTC	9517	False	NA	NA	False	NA	NA	NA	46944012	46989079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_46944088_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
11550	chr19	+	2903	13	NNC	ENSMUSG00000024949.18	novel	4353	13	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	337.498672836897	49	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTCCGGGTCCGTTTC	852	False	NA	NA	False	NA	NA	NA	6413969	6427221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424844_6425963
11551	chr19	-	3410	30	NIC	ENSMUSG00000025159.9	novel	3412	30	NA	NA	3	4	combination_of_known_junctions	FALSE	canonical	2	4	junction_29	52.4045363876748	472	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCACGTGTACTGCCTTA	NA	False	NA	NA	False	NA	NA	NA	41969566	41932639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41969437
11553	chr11	+	4263	26	Intergenic	novelGene_2369	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	26	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGGATCGATTTAAACCCC	2139	False	NA	NA	False	NA	NA	NA	58012172	58059352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_58012613_58013108_58013202_58015757_58016194_58020969_58021057_58021469_58021591_58025591_58025738_58027683_58027824_58028495_58028592_58029844_58029968_58030320_58030441_58032419_58032635_58036173_58036344_58037215_58037365_58038656_58038835_58039240_58039315_58041371_58041508_58042356_58042443_58045928_58046014_58046457_58046665_58047485_58047659_58051531_58051667_58054620_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
11554	chr8	-	1462	8	Antisense	novelGene_ENSMUSG00000031960.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTCCGCCGGGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	111782191	111776345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
11555	chr19	+	4193	19	FSM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	27	-4	-17	4	multi-exon	FALSE	canonical	3	210	junction_1	27.8366043764299	256	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGATGTCCATCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	11889789	11922459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
11556	chr10	+	3629	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	34	-192	4	192	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	671	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAATATATGAGGATTTC	1156	False	NA	NA	False	NA	NA	NA	7668688	7699091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
11559	chr1	-	3237	1	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	6937	-16	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTGTTTAAAGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	55120246	55117009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55117000_55120200
11560	chr11	-	661	1	Genic_Genomic	ENSMUSG00000062825.16	novel	NA	NA	NA	NA	1279	652	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGTACACTGTAGCTGT	1099	False	NA	-30	True	NA	NA	NA	120236524	120235863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_120235900_120236500
11561	chr15	+	2598	17	NNC	ENSMUSG00000022477.14	novel	703	4	NA	NA	-3225	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	846.214915723984	6	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	6	False	NA	NA	False	NA	NA	NA	81776281	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81776360_81779370_81779630_81783329_81783419_81787676_81787836_81788056_81788208_81788970_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798551_81798828
11562	chr4	-	1672	12	NIC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	39	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	305.162062349697	17	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2531	False	NA	NA	False	NA	NA	NA	129229124	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
11563	chr15	-	3181	9	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	-13	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	206.729291586848	1	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTAACTTTGAGCTATAAT	NA	False	NA	NA	False	NA	NA	NA	83033515	83010182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017389_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
11564	chr9	+	2611	13	NNC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	-6	intron_retention	TRUE	canonical	0	0	junction_12	192.044030686252	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGTAAAAAGAACCTTTT	9118	False	NA	NA	False	NA	NA	NA	15217555	15228260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15227239_15227403
11565	chr1	+	3518	10	NIC	ENSMUSG00000026554.16	novel	2859	14	NA	NA	-8109	0	intron_retention	FALSE	canonical	3	475	junction_6	39.7560462052823	2	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	171993411	172023033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
11566	chr5	-	3209	3	FSM	ENSMUSG00000029655.18	ENSMUST00000145822.2	714	3	-2772	277	-2304	-277	multi-exon	FALSE	canonical	3	244	junction_2	4	18	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATTGCCCAGATGCTG	9767	False	NA	NA	False	NA	NA	NA	150574030	150566754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_150566781_150570465_150570543_150570924
11567	chr14	-	3449	30	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	98.9953937841934	8	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAAGGAAGCAGCTGTGA	9787	False	NA	NA	False	NA	NA	NA	55873099	55863177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866617_55866734_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
11570	chr13	-	4149	15	NNC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	19	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	56.953839167508	20	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTCAATAGATGGAAGT	NA	False	NA	NA	False	NA	NA	NA	55248048	55176099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217484_55217621_55221435_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
11571	chr14	+	5053	36	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	217.675557110267	4	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGTTCATGTTATTAAG	NA	False	NA	NA	False	NA	NA	NA	56640136	56762489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56730574_56730862_56737884_56738049_56741374_56741495_56743383_56743465_56745274_56745401_56746735_56746793_56749667_56749785_56751492_56751662_56753792_56753929_56759830_56760021_56761762_56761863_56762269
11572	chr2	+	3540	11	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	-25	-5	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_9	63.3978706267017	596	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTCTGAAAAGTGGATG	NA	False	NA	NA	False	NA	NA	NA	118692483	118713385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708321_118708429_118710933
11573	chr19	-	1114	4	NIC	ENSMUSG00000024799.17	novel	1443	5	NA	NA	9	13	combination_of_known_junctions	FALSE	canonical	3	213	junction_3	30.6847772609735	55	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATAGAACAAGAGGGTT	3	True	NA	NA	False	NA	NA	NA	6117848	6116201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6116445_6116528_6117053_6117152_6117350_6117698
11574	chr8	+	3265	4	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	33	2251	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_3	334.006320632143	395	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCATTGGAAAGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	20016498	20048139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030924_20035860_20036156_20045732
11575	chr2	-	3988	7	NNC	ENSMUSG00000027109.17	novel	4181	7	NA	NA	65	-79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	180.244047520762	2	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTGTATAGAGGTGCTG	2970	False	NA	NA	False	NA	NA	NA	72810705	72766849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809270_72809374_72809830_72809977_72810593
11576	chr17	-	2953	14	NIC	ENSMUSG00000024045.7	novel	4570	14	NA	NA	7	-3	intron_retention	FALSE	canonical	3	51	junction_6	190.739606881046	3	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTAAGTCCTAAAACGGA	NA	False	NA	NA	False	NA	NA	NA	32540152	32523973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32532078_32532237_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32536321_32536819_32536853_32537744_32537784_32540058
11577	chr14	-	3411	28	NIC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-5	-5	intron_retention	FALSE	canonical	0	0	junction_26	102.399939450428	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCAGAGCTGTGACAT	9793	False	NA	NA	False	NA	NA	NA	55873093	55863201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
11578	chr6	-	3022	5	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	2	-374	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	333.387443524797	8	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAATGGAGAAACAATCTT	4239	False	NA	NA	False	NA	NA	NA	35516732	35486214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35488537_35489009_35489253_35498834_35498919_35499616_35499731_35516473
11579	chr8	+	2516	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	571.783937421951	2	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGTAGTGCTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	75836203	75854317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845981_75847433_75847496_75847849_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
11580	chr9	+	2431	13	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-5	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1065.26213518864	3	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGATTTTAAAAACAAAGC	NA	False	NA	NA	False	NA	NA	NA	72569714	72657115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72655939
11581	chr5	+	3389	10	NNC	ENSMUSG00000041264.17	novel	3148	10	NA	NA	12	0	intron_retention	FALSE	canonical	0	0	junction_9	149.102334565357	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTTGGTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	149121499	149152241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149121617_149124517_149124687_149125154_149125284_149130704_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149151821_149152000
11582	chr19	+	2238	13	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	16827	-3	-2893	3	3prime_fragment	FALSE	canonical	3	3022	junction_8	178.924332237588	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	10599517	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
11583	chr2	-	614	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	116	17	0	-11	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	208	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCTGAGAATAAGGAGCA	412	False	NA	NA	False	NA	NA	NA	84500998	84499575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
11584	chr15	+	2788	9	NIC	ENSMUSG00000009585.19	novel	2459	9	NA	NA	1	406	combination_of_known_junctions	FALSE	canonical	3	40	junction_2	224.011578941804	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATCCTCAAAGATTTATG	8286	False	NA	NA	False	NA	NA	NA	79776643	79793043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776771_79779611_79779760_79781944_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
11585	chr5	+	2995	7	NNC	ENSMUSG00000029110.14	novel	2895	8	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	981.947667761486	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTCATTTATTCAGTT	NA	False	NA	NA	False	NA	NA	NA	34493628	34510781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574
11586	chr18	-	1938	10	ISM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	82	2833	-1	-2671	5prime_fragment	FALSE	canonical	3	550	junction_5	72.6092195622023	5	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGCATCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	36916176	36902413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
11589	chr4	+	3344	12	NNC	ENSMUSG00000034042.17	novel	3588	12	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	95.7461347211969	28	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTTTACTGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	116414901	116451079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431615_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
11590	chr3	-	4480	24	NNC	ENSMUSG00000033222.17	novel	4541	23	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	56.9387957813331	233	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCACAGAGGTGATGCTGT	NA	False	NA	NA	False	NA	NA	NA	100876981	100846180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870177_100870234_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
11591	chr10	-	2809	9	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	intron_retention	FALSE	canonical	3	1501	junction_8	206.651238503426	3	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358255	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356985_127358156
11593	chr17	-	2432	5	Intergenic	novelGene_42	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	273	14	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCCCACAGGGAAACAGG	NA	False	NA	NA	False	NA	NA	NA	17426485	17399549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17399710_17399975_17400070_17422770_17423081_17423322_17423383_17424677
11595	chr3	+	3306	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-3	3	intron_retention	FALSE	non_canonical	0	0	junction_7	279.992201057567	2	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965660	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102972950_102974048
11596	chr5	+	4263	27	NNC	ENSMUSG00000028970.10	novel	4306	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	66.386219786299	1	46	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	NA	False	NA	NA	False	NA	NA	NA	8848146	8916315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_8848290_8848735_8848783_8855432_8855482_8856007_8856171_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
11597	chr12	+	3172	16	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-61	0	intron_retention	FALSE	canonical	0	0	junction_13	308.210361063133	4	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	1692	False	NA	NA	False	NA	NA	NA	109586747	109628143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109586835_109591534_109591610_109593481_109593588_109604272_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611695_109611766_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109624486_109624556_109626156_109626242_109627179
11598	chr1	-	2370	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2068.06504195383	1	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287094	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284304_86284464_86284678_86285175_86285828_86285946_86286927
11599	chr8	+	2693	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	-8	151	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	220.857435737209	70	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACTTATTTTTAG	NA	False	NA	NA	False	NA	NA	NA	69246617	69280304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279385_69279673_69279928
11601	chr5	-	3746	19	NNC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_17	80.8163594244215	6	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATTTTGAGCCATGCAA	NA	False	NA	NA	False	NA	NA	NA	9211669	9168870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9202876_9202994_9211613
11603	chr1	+	4972	6	FSM	ENSMUSG00000036206.13	ENSMUST00000066279.11	4995	6	4	19	4	-19	multi-exon	FALSE	canonical	3	96	junction_1	14.3164241345386	155	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACAAAAGTTGCAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	88998140	89082771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_88998320_89034979_89035059_89065280_89065526_89071271_89073629_89079921_89080111_89080848
11605	chr19	+	3521	10	ISM	ENSMUSG00000055491.15	ENSMUST00000111899.8	5246	14	7061	109	-4234	1	3prime_fragment	FALSE	canonical	3	236	junction_3	88.0661928380446	18	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTAAGTGGTATTTGG	NA	False	NA	NA	False	NA	NA	NA	46052038	46061241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
11606	chr11	-	3397	9	FSM	ENSMUSG00000007646.14	ENSMUST00000067692.13	3944	9	26	521	9	-521	multi-exon	FALSE	canonical	3	130	junction_1	12.5940213990607	713	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTGTGTATACATCT	NA	False	NA	NA	False	NA	NA	NA	87295323	87267991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
11607	chrX	-	3561	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	40	3	0	-3	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	233	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAAATTTGCTCACATT	NA	False	NA	NA	False	NA	NA	NA	37545291	37508386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
11608	chr1	+	3869	20	FSM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	72	5	72	-5	multi-exon	FALSE	canonical	3	150	junction_2	20.2454468052323	244	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGTCCAACTCTCATTT	NA	False	NA	NA	False	NA	NA	NA	163607223	163744673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163743293
11609	chr8	+	3067	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	440.183528157902	1	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8815	False	NA	NA	False	NA	NA	NA	120637540	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668659_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
11610	chr10	+	4258	20	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-14815	0	intron_retention	TRUE	canonical	0	0	junction_1	134.398217571613	1	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	25259741	25399417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25259795_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25369464_25369528_25371342_25371490_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
11611	chr16	-	2210	9	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	829.826600863096	10	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGTGACTGATGCAATAT	NA	False	NA	NA	False	NA	NA	NA	22084679	22064563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22065994_22067847_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
11613	chr5	-	2235	11	FSM	ENSMUSG00000042647.14	ENSMUST00000041252.13	3881	11	2	1644	2	-1514	multi-exon	FALSE	canonical	3	24	junction_8	9.91413132856328	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGTAAAAGGGCCTTT	NA	False	NA	NA	False	NA	NA	NA	121756999	121736481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
11614	chr3	-	1886	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30629	-2421	multi-exon	FALSE	non_canonical	0	0	junction_1	0	333	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCCCGAACGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	121251852	121220305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_121220476_121243595_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
11616	chr18	+	5109	11	NIC	ENSMUSG00000009535.14	novel	965	5	NA	NA	21	-8	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	335.57288329065	172	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACAGTGGTGGTTTGATT	NA	False	NA	NA	False	NA	NA	NA	68433513	68457914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_68433695_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
11617	chr12	+	4779	29	FSM	ENSMUSG00000042029.8	ENSMUST00000084828.5	4684	29	-19	-76	-19	76	multi-exon	FALSE	canonical	3	123	junction_1	40.0130559050061	108	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATGATAGGAGGAACC	NA	False	NA	NA	False	NA	NA	NA	116369002	116425307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_116369082_116369321_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
11619	chr14	-	2659	12	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	-11	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	294.161169069661	7	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTTCTGTACAAAATCT	6419	False	NA	NA	False	NA	NA	NA	66071368	66056538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66056694_66056820_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
11620	chr17	-	1244	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-219	2943	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGCGAAGTCTGAAGCC	NA	False	NA	NA	False	NA	NA	NA	35821667	35817030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
11621	chr1	-	2645	12	Antisense	novelGene_ENSMUSG00000051223.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCGAGCAGGAGGGGAGG	23	False	NA	NA	False	NA	NA	NA	58445521	58432294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_58432376_58433359_58433439_58436839_58437011_58438163_58438256_58439235_58439302_58439863_58440000_58440270_58440382_58440498_58440671_58442045_58442190_58442770_58442911_58443388_58443513_58444192
11622	chr4	-	2801	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-25	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	228.705050228455	9	83	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATTTTGACTTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	147726995	147696398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147706414_147706577_147725343_147725463_147726791
11623	chr9	+	1204	8	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	9236	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTCTCAGGATTTGAGT	9569	False	NA	NA	False	NA	NA	NA	64188888	64212072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
11624	chr13	-	4791	10	NNC	ENSMUSG00000021713.10	novel	2342	11	NA	NA	-8	-74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	137.582657534738	4	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCTCTTATGTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	104365338	104341705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104353596_104355686_104355737_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
11625	chr10	+	2537	8	NIC	ENSMUSG00000006498.17	novel	2598	13	NA	NA	29	2	intron_retention	FALSE	canonical	3	18	junction_4	629.89859890141	2	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	260	False	NA	NA	False	NA	NA	NA	79694856	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
11626	chrX	+	3009	17	NNC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	-9	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	149.096641792329	1051	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTCGACTACCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	47345729	47371326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47355291_47355736_47361006_47361060_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
11628	chr11	-	2501	15	NNC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	196.697594996866	2	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	NA	False	NA	NA	NA	84020425	83969745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978401_83981074_83981211_83984431_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
11629	chr3	-	2951	16	NNC	ENSMUSG00000027699.20	novel	4024	24	NA	NA	-2506	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	264.758204153652	1	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTTATGTGTCCTGT	409	False	NA	NA	False	NA	NA	NA	27193791	27151373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27152638_27154976_27155033_27156580_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181161_27184189_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680
11630	chr13	+	2274	7	ISM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	179907	385	70395	263	3prime_fragment	FALSE	canonical	3	689	junction_3	68.9405943951425	1	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCACAAGCTGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	45064653	45074734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
11631	chr5	+	3343	14	NIC	ENSMUSG00000028954.12	novel	3546	15	NA	NA	-4	-510	intron_retention	FALSE	canonical	3	299	junction_1	115.360612888096	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAACCACAGCAAGTTATT	NA	False	NA	NA	False	NA	NA	NA	24890980	24914864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
11633	chr1	+	2589	21	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	142.618336829455	96	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	45834636	45862779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838228_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
11634	chr13	-	3087	8	FSM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	-31	-2	-31	2	multi-exon	FALSE	canonical	3	220	junction_2	24.1119836409624	416	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGATTTGCAGTGAACATT	NA	False	NA	NA	False	NA	NA	NA	81859163	81821959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
11635	chr6	+	3467	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	4	11	4	-11	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	1161	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTACTGTCGTGGTGGAG	-3	True	NA	NA	False	NA	NA	NA	28480350	28888820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
11636	chr6	+	2116	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	-19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	465.928478351319	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2924	False	NA	NA	False	NA	NA	NA	122285938	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286_122293422_122293558
11637	chr4	-	2470	18	NIC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	57	0	combination_of_known_splicesites	FALSE	canonical	2	22	junction_17	184.81942931761	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120427416	120397064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120427347
11638	chr1	+	2487	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	606.804522391735	6	57	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTTTTGTCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	4928016	4968132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959763_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
11640	chr17	-	2382	9	NNC	ENSMUSG00000024097.12	novel	1991	9	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_6	890.147003309004	5597	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCCTGATATTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	80514734	80507512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512403_80512511_80512690_80512868_80513276_80513458_80514603
11642	chr12	-	4631	20	NNC	ENSMUSG00000020593.17	novel	5581	21	NA	NA	8886	-533	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	42.2260766736212	1	105	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCTACCCTGAAACAGAG	NA	False	NA	NA	False	NA	NA	NA	16630835	16586487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613628_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621261_16623660_16623787_16626948_16627257_16629882_16629979_16630704
11643	chr10	-	3517	18	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	-8607	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	116.326143348336	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTAATCTGTGTAGTTC	52	False	NA	NA	False	NA	NA	NA	62616362	62579714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612498_62616236
11644	chr10	-	3954	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	210	3	210	-3	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	1528	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAAACCTGTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	71073900	71061296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
11645	chr6	-	2348	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	131	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1180.44491542262	1	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAACTCTGGATTTGAA	8616	False	NA	NA	False	NA	NA	NA	145021779	144944885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945656_144945730_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
11646	chr11	-	3218	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	50	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	261.421985581654	4	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAACCTTGAGTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	88755362	88721622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88735528_88736012_88736692_88755222
11647	chr9	-	2553	15	Antisense	novelGene_ENSMUSG00000032042.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGCACTTCCGCTACGAG	NA	False	NA	NA	False	NA	NA	NA	35127919	35122459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124580_35124675_35124829_35125038_35125128_35125228_35125351_35125481_35125570_35125855_35126027_35126111_35126327_35126761_35126924_35127003_35127108_35127231_35127571_35127614
11648	chr10	-	3052	11	NNC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	31	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	157.447800873813	10	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTTGTCTTACACATTT	NA	False	NA	NA	False	NA	NA	NA	117546166	117524796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531899_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850
11649	chrX	-	4048	11	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	13	-184	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	41.6922055065452	1	171	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTACACCCAAAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	49724167	49652185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49656416_49656571_49658153_49659169_49661891_49662017_49662100_49662351_49666158_49666168_49666747_49666902_49670279_49670434_49715313_49715387_49719767_49719873_49723817
11650	chr2	+	2738	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-8	-1516	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	61.6143762521925	5	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGGTTAGATTTAAGTTC	NA	False	NA	NA	False	NA	NA	NA	152068787	152122256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152090618_152090732_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117353_152117467_152118866_152118954_152120888
11652	chr14	-	3383	10	NIC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	-8	-8	intron_retention	FALSE	canonical	3	933	junction_7	64.172991511275	1	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGCATTTCATTGTTCA	6422	False	NA	NA	False	NA	NA	NA	66071365	66056494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
11653	chrX	+	4587	2	ISM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	280	-74	-76	74	intron_retention	FALSE	canonical	3	213	junction_1	0	9	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAGAGAATTTCTGGTG	9780	False	NA	NA	False	NA	NA	NA	57076282	57081993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_57077598_57078721
11654	chr7	-	3063	24	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-5019	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	381.172482280184	4	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44192861	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185190_44187471_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189873_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664
11655	chr11	-	3229	14	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9028	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	597.437625176329	1	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTCAGTTATCTGCATT	396	False	NA	NA	False	NA	NA	NA	106615248	106545050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106573705_106573790_106575030_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615168
11656	chr1	+	2875	25	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	224.104510434802	285	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTCCTGCTTGCCGTTTC	3055	False	NA	NA	False	NA	NA	NA	171910386	171949891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944526_171949615
11657	chr16	-	2854	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	206	67	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_10	396.298385058531	10	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTAAGAGTTGTACT	6472	False	NA	NA	False	NA	NA	NA	38370378	38345431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355024_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370235
11658	chr7	-	630	1	FSM	ENSMUSG00000099647.2	ENSMUST00000122119.2	321	1	-46	-263	-46	263	mono-exon	FALSE	NA	NA	NA	NA	NA	4680	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAACTTCAGTG	NA	False	NA	NA	False	NA	NA	NA	54062272	54061642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_54061600_54062300
11660	chr2	+	3633	14	NNC	ENSMUSG00000036646.14	novel	3755	13	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	104.397907435557	331	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGCTGTGTGCAGTGTT	3990	False	NA	NA	False	NA	NA	NA	25222765	25242219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373_25240555_25240646
11662	chr7	-	1892	17	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.242061459137964	1	22	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGCGGTTGAGGCTGAG	9273	False	NA	NA	False	NA	NA	NA	13045351	13029409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
11672	chr17	+	2115	14	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-5236	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	359.388122348537	2	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21171602	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178994_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
11673	chr6	+	2993	15	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	246	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	227.166901243135	1	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATTGGTGTCAGCCTCC	NA	False	NA	NA	False	NA	NA	NA	87872683	87890572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153_87889330_87889370
11674	chr14	+	1121	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	36	605	-16	-10	multi-exon	FALSE	canonical	3	2255	junction_1	40	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTCCTTATACAAAACC	6575	False	NA	NA	False	NA	NA	NA	76741953	76744600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
11675	chr13	-	2886	13	NNC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	0	79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	106.442831552383	4	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCCTGTGCTATTGTGTG	NA	False	NA	NA	False	NA	NA	NA	68730232	68709402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68710552_68712438_68712583_68714229_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
11677	chr2	+	2686	7	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	141	1	intron_retention	FALSE	canonical	3	1876	junction_4	263.465156878265	3	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116552	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130119545_130119768_130119891_130120075_130120211_130120816
11678	chr1	-	1716	11	NNC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	-48	6363	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	50.2593274925162	1	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCAAGAAACAGCGTAATG	1461	False	NA	NA	False	NA	NA	NA	118981117	118769826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_118769928_118772080_118772246_118773669_118773797_118776112_118776248_118780987_118781111_118782166_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118929769_118929937_118981031
11679	chr11	-	2135	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-159	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644700	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642437_48643999_48644186
11681	chr17	+	4116	5	NIC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	31	6	intron_retention	FALSE	canonical	0	0	junction_4	384.424569974397	53	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCACACATGAACGTCT	NA	False	NA	NA	False	NA	NA	NA	48717072	48724288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_48717401_48717855_48717933_48718291_48721313_48722248_48722362_48723711
11682	chr11	+	581	5	NNC	ENSMUSG00000071866.13	novel	1170	5	NA	NA	64	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	16233.0718596327	1941	1	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTTTGTCCTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	6365939	6369809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6365980_6368100_6368132_6368225_6368231_6369112_6369286_6369477
11683	chr12	-	2747	10	NNC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	-3	intron_retention	FALSE	canonical	1	1	junction_5	622.325209730947	515	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTGTCACTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	108860063	108825962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841183_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
11684	chr14	+	2828	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223939.2	2769	4	-45	-14	3	1	multi-exon	FALSE	canonical	3	9630	junction_1	1522.07774659071	592	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	NA	False	NA	NA	NA	24540751	24545927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450
11686	chr17	-	2523	4	NNC	ENSMUSG00000062753.15	novel	862	5	NA	NA	1456	6922	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCCCGGCTCAGGGGA	NA	False	NA	NA	False	NA	NA	NA	27782641	27775624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27775686_27778506_27778675_27779898_27779985_27780433
11687	chrX	-	1281	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	101	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAATGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	135642027	135633700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634176_135634680_135635251_135636294_135636372_135640553_135640644_135641958
11689	chr5	-	3014	5	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	232	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	32.9165611812656	73	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTAAAGAGTTGCCATG	6363	False	NA	NA	False	NA	NA	NA	109838675	109822421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109823889_109823972_109825258_109826379_109826441_109826628_109826756_109838601
11690	chr2	+	2427	8	NNC	ENSMUSG00000026864.14	novel	2613	8	NA	NA	-4	-70	intron_retention	FALSE	non_canonical	0	0	junction_5	941.958402825232	3	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTAATTTTTGTGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	34662102	34666473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664348_34664583_34664785_34665077_34665246_34665562
11691	chr18	-	2527	9	NNC	ENSMUSG00000053644.14	novel	1914	18	NA	NA	-4701	0	intron_retention	FALSE	canonical	0	0	junction_7	141.76212470191	5	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	2429	False	NA	NA	False	NA	NA	NA	56675390	56659815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_56660080_56661348_56661425_56664561_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56671210_56671283_56671815_56675296
11692	chr4	+	5261	25	NIC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	-14	0	intron_retention	FALSE	canonical	1	26	junction_4	21.999842171151	147	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTCCAGCTCTAGTG	NA	False	NA	NA	False	NA	NA	NA	126450773	126487696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444
11695	chr4	+	1707	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	7	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	35.3426377173001	32	21	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147534439_147534577_147578832_147578926_147637751_147637856_147665698_147665826_147667290_147667445_147668191_147668465_147668976
11696	chr13	+	3737	8	FSM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	346	18	346	-11	multi-exon	FALSE	canonical	3	173	junction_5	15.8461995701281	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTTTTGTATAATT	NA	False	NA	NA	False	NA	NA	NA	81031874	81044143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
11697	chr11	+	4226	6	Antisense	novelGene_ENSMUSG00000044066.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	49	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCACAGTGGCCCCCCCTC	NA	False	NA	NA	False	NA	NA	NA	20177309	20192045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20179481_20180422_20180595_20186005_20186103_20188465_20188591_20189197_20190693_20191879
11698	chr1	-	2560	4	Antisense	novelGene_ENSMUSG00000065228.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGATGGCGGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	160866104	160862735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160863371_160863548_160865116_160865562_160865841_160866024
11699	chr2	+	2723	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	552	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	NA	False	NA	NA	NA	120398151	120431736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
11700	chr7	-	3258	4	Antisense	novelGene_ENSMUSG00000080683.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCCACCGCCGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	43901295	43896210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_43897719_43898876_43899023_43899442_43899482_43899730
11701	chr11	+	1598	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	-1	29	-1	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	13	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAGTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653618	120655216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120655200
11702	chr3	-	3197	10	NIC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	3	22	intron_retention	FALSE	canonical	3	2549	junction_6	108.41973762269	51	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCCCCAGACTTGAACCT	NA	False	NA	NA	False	NA	NA	NA	108352469	108333905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
11705	chr5	-	6684	9	NNC	ENSMUSG00000029190.20	novel	6677	9	NA	NA	-9	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	25.8686586432308	81	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTGTTTTTATTTATC	NA	False	NA	NA	False	NA	NA	NA	36853290	36757827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36760148_36761854_36761953_36765281_36765391_36770589_36773879_36776086_36776169_36777007_36777075_36787000_36787133_36830091_36830587_36853198
11706	chr4	-	3057	18	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	20	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	224.42645083392	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATTCTTGGTCTCCGTGT	8	True	NA	NA	False	NA	NA	NA	41275096	41194318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205955_41233659_41233715_41235516_41235595_41251534_41251672_41275039
11707	chr18	+	5649	4	ISM	ENSMUSG00000058881.14	ENSMUST00000071233.7	7703	6	72113	35	-1063	-35	3prime_fragment	FALSE	canonical	3	187	junction_1	11.7851130197758	1	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTCTTTTAGAAGGTGGC	7785	False	NA	NA	False	NA	NA	NA	83004869	83023404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_83006324_83011194_83011315_83012594_83012663_83019397
11708	chr5	+	4184	27	NIC	ENSMUSG00000028970.10	novel	4306	28	NA	NA	-2	-99	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	62.5254149509853	1	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTAATTTCTACCCTAC	NA	False	NA	NA	False	NA	NA	NA	8848150	8916216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
11709	chr5	+	4357	34	NIC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	104	1	combination_of_known_junctions	TRUE	canonical	2	29	junction_1	25.0320272353535	217	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTATGACTTGAGATTGT	NA	False	NA	NA	False	NA	NA	NA	138278605	138310653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_138278883_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
11710	chr11	+	4749	17	Antisense	novelGene_ENSMUSG00000020687.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	49	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGACACGGAAATAGCCGAA	NA	False	NA	NA	False	NA	NA	NA	104393932	104441359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_104396507_104397963_104398119_104399170_104399248_104400996_104401128_104403727_104403842_104406194_104406406_104408200_104408354_104411488_104411663_104412204_104412417_104413550_104413649_104416876_104416995_104417691_104417804_104420166_104420267_104422556_104422681_104425562_104425712_104427420_104427499_104441190
11711	chr4	+	2728	25	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	11	4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	124.9045677374	572	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGATGGTTCTTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	148642898	148666854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649101_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
11713	chrX	+	2675	16	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	57	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	703.927351049492	3	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTGAATTTGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	74139516	74153380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301_74153146_74153214
11714	chr6	-	2861	12	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	-3	-13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	323.557038286595	1	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGCTACTTAGCCTCAC	NA	False	NA	NA	False	NA	NA	NA	95695784	95451135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543992_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95592790_95592944_95632438_95632581_95695669
11715	chr6	+	4196	27	NNC	ENSMUSG00000030016.15	novel	6199	28	NA	NA	-9	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	99.8486132208664	1	92	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAACACTGTTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	83891339	83963847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83891462_83905634_83906663_83906854_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83958665_83958768_83960957_83961057_83961758_83961878_83963539
11716	chr11	+	1964	10	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCTGCGTCCCGGCAGC	NA	False	NA	NA	False	NA	NA	NA	106672371	106679320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296_106673522_106674786_106674845_106674926_106674987_106675237_106675350_106675704_106675879_106675961_106676118_106676215_106676354_106677794_106677899_106679096
11717	chr14	-	3796	15	NNC	ENSMUSG00000114797.2	novel	3913	15	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	59.493954417612	354	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGAATCTTTGTAGGTC	NA	False	NA	NA	False	NA	NA	NA	60488896	60455532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_60457608_60459031_60459128_60460816_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
11719	chr2	+	2946	4	Antisense	novelGene_ENSMUSG00002075749.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCAGCCTTAGTCCGCCC	NA	False	NA	NA	False	NA	NA	NA	75505860	75534875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_75507529_75507888_75508057_75508831_75509771_75534704
11720	chr4	-	2924	12	Antisense	novelGene_ENSMUSG00000028811.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTGCCGGGAACTGTCACG	9052	False	NA	NA	False	NA	NA	NA	129113027	129083740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_129083864_129090620_129090768_129090903_129091082_129094518_129094647_129099919_129100001_129101731_129101825_129103442_129103580_129104284_129104367_129107733_129108547_129109016_129109213_129110470_129110610_129112220
11721	chr14	+	3006	4	NIC	ENSMUSG00000040618.8	novel	2631	8	NA	NA	88	-23	intron_retention	FALSE	canonical	3	1534	junction_2	89.5705804876182	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTATACACGCGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	55779949	55786368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55780109_55781045_55782883_55785153_55785292_55785496
11722	chr6	-	4005	8	FSM	ENSMUSG00000030168.14	ENSMUST00000169744.8	3489	8	96	-612	96	-3	multi-exon	TRUE	canonical	3	86	junction_7	15.2168005969771	339	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTTGTTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	119365551	119330113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119365442
11723	chr5	+	2908	7	NIC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	1293	junction_4	355.934919144872	1	124	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493757	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34507255_34507416_34508133_34508183_34508574
11724	chr9	+	2896	16	FSM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	-32	-1	-32	1	multi-exon	FALSE	canonical	3	236	junction_12	29.9965923990635	439	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAGTGTCTTTAATAAC	NA	False	NA	NA	False	NA	NA	NA	48966880	48990073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
11725	chrX	-	4939	25	NIC	ENSMUSG00000031310.17	novel	5564	25	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	17	junction_23	27.4347394840111	245	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGCTTTCTCTGGGGG	NA	False	NA	NA	False	NA	NA	NA	100463412	100447990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100462400_100462559_100463303
11726	chr12	-	2493	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	13	-2324	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	437.628858280621	34	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTGTCTTCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	13299151	13269297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270700_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
11727	chr19	+	6191	8	FSM	ENSMUSG00000036450.5	ENSMUST00000040455.5	6194	8	4	-1	4	1	multi-exon	FALSE	canonical	3	98	junction_5	13.1583759310508	174	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATGTGACTTATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	44551292	44564714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44551494_44551728_44551980_44554316_44554466_44556773_44556920_44557842_44557950_44558331_44558396_44558665_44558777_44559552
11728	chrX	+	3239	14	NIC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	91.7350184469783	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTTCCAGGGCTATGA	NA	False	NA	NA	False	NA	NA	NA	70258636	70358897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
11729	chr5	+	2273	2	NNC	ENSMUSG00000075591.3	novel	2355	4	NA	NA	-460	-22677	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	67	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCACCCTCTTTATCAAA	NA	False	NA	NA	False	NA	NA	NA	138361520	138363872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138362739_138362817
11730	chr2	+	4191	7	NIC	ENSMUSG00000000826.17	novel	3728	6	NA	NA	3	637	combination_of_known_junctions	FALSE	canonical	3	29	junction_6	78.8044344493943	110	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGTTTCTTGAAGTGT	7074	False	NA	NA	False	NA	NA	NA	181162346	181194679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065_181191814_181191959
11731	chr8	-	3778	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-23575	-13	intron_retention	FALSE	canonical	2	8	junction_5	83.2354425043136	26	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTTTTTTTCAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	43618098	43582856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43593776_43594003_43594542_43595725_43595759_43618053
11732	chr1	-	3823	5	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	-20	-824	intron_retention	FALSE	non_canonical	0	0	junction_1	130.574451942177	53	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAGCCGCAGCCGCCAGA	8625	False	NA	NA	False	NA	NA	NA	88205321	88197923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88198039_88199164_88199974_88200213_88202820_88204940_88205008_88205095
11734	chr2	+	3319	11	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	2	-7	intron_retention	FALSE	canonical	3	543	junction_4	41.4241475470528	346	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCCAGATATTTTACTC	NA	False	NA	NA	False	NA	NA	NA	174257645	174269288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174265942_174266398_174267047_174267705_174267821_174268109_174268423_174268609_174268740_174268823
11735	chr6	-	3718	22	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-3	-54	intron_retention	FALSE	non_canonical	0	0	junction_1	192.295136446905	2	93	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCAGA	10	True	NA	NA	False	NA	NA	NA	29609615	29540879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541811_29551909_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565658_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
11737	chr16	-	2192	11	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	800.539449371485	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGTTTTTACAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	22084668	22064628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065159_22065228_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
11738	chr17	-	3996	14	ISM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	-38	6	-21	-6	intron_retention	FALSE	canonical	3	148	junction_9	20.4317307466053	12	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCTCTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	85397690	85371963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767
11739	chr17	+	1888	13	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	997.264174295524	9	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135249	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146_13143242_13143307
11740	chr1	+	3792	9	Antisense	novelGene_ENSMUSG00000044783.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	46	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTATTTACGCAACCGA	4204	False	NA	NA	False	NA	NA	NA	88190835	88205279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_88191773_88192123_88194365_88195672_88195746_88197037_88197132_88197921_88198024_88200451_88200486_88202761_88202819_88204939_88205005_88205090
11741	chr13	-	4039	20	Antisense	novelGene_ENSMUSG00000021413.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	63	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCGGAGGAAGAAGGGACAG	NA	False	NA	NA	False	NA	NA	NA	35089994	35059573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_35059678_35067213_35068416_35070655_35070825_35072104_35072263_35073494_35073575_35074475_35074688_35076071_35076145_35077297_35077405_35077742_35077835_35078417_35078566_35079301_35079438_35079947_35080101_35083088_35083207_35083813_35083964_35084344_35084431_35085373_35086120_35086615_35086658_35087168_35087255_35088024_35088077_35089869
11743	chr9	+	830	4	FSM	ENSMUSG00000032397.8	ENSMUST00000215031.2	352	4	26	-504	0	504	multi-exon	FALSE	canonical	3	673	junction_1	825.976728216695	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTACATATGTAACAGATG	9569	False	NA	NA	False	NA	NA	NA	64188888	64198235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655
11745	chr5	-	2871	4	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	12151	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	23.3380947522857	3	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGGTCATGGTATCTTT	NA	False	NA	NA	False	NA	NA	NA	109826756	109822407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109824523_109824690_109825258_109826379_109826441_109826628
11746	chr14	+	3678	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	19	-12	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	116.316610487223	1	99	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGAAAGCCCTGCTGG	NA	False	NA	NA	False	NA	NA	NA	32043994	32070096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054846_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
11747	chr10	-	4915	25	FSM	ENSMUSG00000019820.12	ENSMUST00000217994.2	3161	25	244	-1998	244	0	multi-exon	TRUE	canonical	3	18	junction_24	24.236536927173	122	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGATGTTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	12490331	12257933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12490234
11748	chr5	+	3802	15	FSM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	-46	5	23	-2	multi-exon	FALSE	canonical	3	389	junction_14	43.2925501438664	278	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGGTTGGGGGCAACTT	NA	False	NA	NA	False	NA	NA	NA	34731170	34789647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
11749	chrX	-	3313	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	33	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	216.735547563972	1	70	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAAAATCCTTGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	149800285	149766146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767463_149768810_149769183_149770834_149771058_149774131_149774254_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
11750	chr9	+	2982	6	NIC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	0	-6	intron_retention	FALSE	canonical	3	405	junction_3	19.2083315256688	778	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTTGTGAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	20927280	20940107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20927398_20930214_20930476_20936839_20937896_20938373_20938632_20938727_20938977_20939066
11752	chr10	-	5306	3	NNC	ENSMUSG00000048756.12	novel	6848	4	NA	NA	2	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	64	200	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTCATGCCCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	42152690	42057844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42062292_42072461_42073252_42152621
11753	chrX	+	2991	4	NIC	ENSMUSG00000031311.18	novel	1337	5	NA	NA	-185	-5	intron_retention	FALSE	canonical	3	3435	junction_1	157.346750840302	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100486726	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100487968_100488293_100488941_100489724_100489835_100491199
11754	chr15	-	2529	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	101	1787	101	-1787	multi-exon	TRUE	canonical	3	6501	junction_2	212.49836600679	406	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCTGTGTGTAGTGTAC	256	False	NA	NA	False	NA	NA	NA	37007545	36999057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
11755	chr10	-	2158	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	intron_retention	FALSE	canonical	3	1501	junction_10	185.884614747967	75	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358270	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
11756	chr2	-	3608	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	8	-5	intron_retention	FALSE	canonical	3	40	junction_19	66.9909695406776	281	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTAGCTTCAGTACTGT	NA	False	NA	NA	False	NA	NA	NA	11782385	11747390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782214
11757	chr2	+	3104	22	NNC	ENSMUSG00000002455.15	novel	3054	21	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	129.817663861048	820	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGAGTTATGTTGGGGCT	2510	False	NA	NA	False	NA	NA	NA	181243127	181297444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181285029_181285105_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
11758	chr11	-	1930	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1334.5135424797	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9627	False	NA	NA	False	NA	NA	NA	106679347	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676302_106677803_106677901_106679098
11759	chr5	-	4190	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	0	-8	0	8	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	1	188	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATGTCCCTAATTTAATC	NA	False	NA	NA	False	NA	NA	NA	92231578	92200014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
11760	chr2	+	3168	18	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	22	0	intron_retention	FALSE	canonical	0	0	junction_14	169.088928507885	161	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	515	False	NA	NA	False	NA	NA	NA	31462684	31507532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31503042_31503120_31504722_31504795_31505509_31505638_31506190
11761	chr13	-	2886	8	NNC	ENSMUSG00000074863.6	novel	1765	7	NA	NA	27	152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	81.8530290664123	31	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTTTTTGATAGCAGGG	6835	False	NA	NA	False	NA	NA	NA	62860540	62819445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62821755_62823062_62823124_62823332_62823469_62849258_62849306_62853514_62853576_62853943_62854071_62855967_62856024_62860451
11763	chr3	+	4255	18	FSM	ENSMUSG00000037643.15	ENSMUST00000108249.9	4708	18	232	221	232	-221	multi-exon	FALSE	canonical	3	904	junction_14	67.823095759034	326	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGTGGACCATTTTCA	NA	False	NA	NA	False	NA	NA	NA	31050127	31106887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_31050235_31072698_31072821_31079278_31079369_31080401_31080453_31083634_31083721_31085232_31085374_31087326_31087379_31088647_31088707_31091994_31092172_31092598_31092697_31093177_31093265_31093516_31093653_31095590_31095679_31097839_31097966_31099030_31099111_31100621_31100712_31101120_31101237_31104338
11765	chr5	-	4099	33	NIC	ENSMUSG00000060261.17	novel	4021	33	NA	NA	143	0	combination_of_known_junctions	FALSE	canonical	3	196	junction_23	67.772417589588	339	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	848	False	NA	NA	False	NA	NA	NA	134343387	134266696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
11766	chr2	-	3658	14	FSM	ENSMUSG00000027086.17	ENSMUST00000102706.4	2511	14	-1025	-122	12	0	multi-exon	FALSE	canonical	0	0	junction_12	76.1245475885547	119	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTATGGCCCACCATATA	7085	False	NA	NA	False	NA	NA	NA	69543830	69517158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532793_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
11767	chr15	+	2209	15	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	512.826307270377	14	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756687	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796160_81798438_81798561_81798828
11768	chr1	+	2798	23	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	0	914	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	327.091869218865	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGTTATGCCTGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	85992362	86061436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060527_86061359
11769	chr4	+	3375	14	NIC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	7	-181	intron_retention	FALSE	canonical	3	755	junction_7	73.878438455608	929	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTTCTGTCCATCTGTG	9130	False	NA	NA	False	NA	NA	NA	152018207	152066413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058771_152061406_152061563_152062455_152062526_152063728_152064044_152064374_152064505_152065159
11770	chr6	-	2522	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	14	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTATTAGAAAAATAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	148847874	148822571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823853_148823897_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
11772	chr9	-	3513	8	NNC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	70	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	62.240153716824	257	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTCTGATGTGATTCAT	50	True	NA	NA	False	NA	NA	NA	7836988	7818231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836734
11773	chr13	-	3840	11	NIC	ENSMUSG00000034928.17	novel	3772	11	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	111	junction_10	242.423369335549	623	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTGCCCAAGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	54836003	54827224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831964_54832150_54832302_54835843
11774	chr19	-	5024	2	FSM	ENSMUSG00000037916.15	ENSMUST00000134049.2	692	2	-3481	-851	40	-11	multi-exon	FALSE	canonical	3	1453	junction_1	0	4	166	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCCAACCATAGCTTGT	6611	False	NA	NA	False	NA	NA	NA	4062621	4057513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4058510_4058593
11775	chr3	+	3077	13	NIC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-89	-3	intron_retention	FALSE	canonical	3	1234	junction_8	96.7885366835006	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAAGCGTGCTGGATT	NA	False	NA	NA	False	NA	NA	NA	32762824	32781114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
11776	chrX	-	1717	14	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAAACAGACCCCAGGT	NA	False	NA	NA	False	NA	NA	NA	20548827	20536439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539148_20547367_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548615
11779	chr14	-	3003	10	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-3	1198	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	99.0499312916919	23	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACCAAATGATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	21102266	21084883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21086291_21086393_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
11780	chr14	-	2597	17	NIC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-1	-10	combination_of_known_junctions	FALSE	canonical	2	32	junction_16	184.440327409707	1044	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	4858	False	NA	NA	False	NA	NA	NA	54754819	54744653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754624
11781	chr17	+	2347	5	NIC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	74	-97	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	858.014677904755	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTATATTTTTGTACTA	NA	False	NA	NA	False	NA	NA	NA	29251736	29262250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29251761_29255214_29255423_29257463_29257599_29260180_29260268_29260357
11782	chr11	+	4778	4	FSM	ENSMUSG00000042650.4	ENSMUST00000044250.4	5730	4	951	1	951	-1	multi-exon	FALSE	canonical	3	390	junction_2	6.48074069840786	280	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCACCTGTTTGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	60429754	60449337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60430022_60438513_60438595_60444539_60444696_60445063
11783	chr4	-	2270	13	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	-54	-537	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	265.578443632427	11	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCACAACATAGCAGGCATT	NA	False	NA	NA	False	NA	NA	NA	122779903	122753376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779621
11784	chr3	+	2108	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	-35	0	-35	0	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	9311	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	8574384	8626666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
11785	chr12	-	2407	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-21	-2334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	439.71993996179	7	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299185	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269610_13270399_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
11786	chr19	-	2038	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-43	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1395.20515770935	2	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTAAGCCATTCATTGC	NA	False	NA	NA	False	NA	NA	NA	15902337	15882501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884518_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895616_15895734_15895776_15896818_15896889_15898299_15898361_15902227
11789	chr15	-	1722	6	ISM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	22454	9	5799	-9	3prime_fragment	FALSE	canonical	3	303	junction_4	19.2208220427743	1	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACATTCATGAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	81222559	81203120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136
11790	chr8	+	3780	15	NIC	ENSMUSG00000031985.10	novel	2984	16	NA	NA	-4	-19	intron_retention	FALSE	canonical	3	573	junction_6	37.2581315600627	12	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTTACTTTAAACTTTAT	5116	False	NA	NA	False	NA	NA	NA	125589767	125616777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125614559_125616010
11791	chr13	+	2779	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	4	0	-4	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	829	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAACTGTCTCTTACT	NA	False	NA	NA	False	NA	NA	NA	54225887	54262357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
11792	chr13	+	3174	12	NNC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	236.923986136085	5	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTCAGCTCTTTGAGTG	NA	False	NA	NA	False	NA	NA	NA	120151986	120169615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924_120168128_120168249
11794	chr14	-	3157	7	NNC	ENSMUSG00000022051.16	novel	3238	6	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.697042630482	21	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGTCCATATATCATTT	NA	False	NA	NA	False	NA	NA	NA	67246313	67222688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67224917_67224983_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
11795	chr2	+	2536	12	NIC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-10	-1413	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	44.8599289248266	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTTTATACAACCCTCA	NA	False	NA	NA	False	NA	NA	NA	152068805	152122359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152068912_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
11796	chr12	+	4121	7	NNC	ENSMUSG00000020585.5	novel	1773	7	NA	NA	370	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	374.047419750788	21	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTACCATTGTCCTTAAA	NA	False	NA	NA	False	NA	NA	NA	8972033	8988722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8972295_8981627_8984300_8984508_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
11797	chr11	+	3762	16	Antisense	novelGene_ENSMUSG00002076300.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGGGTCCCGCGGGCTGC	NA	False	NA	NA	False	NA	NA	NA	75191182	75239136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75192229_75193492_75193581_75196933_75198117_75200957_75201096_75203128_75203274_75203517_75203659_75203803_75203995_75204124_75204195_75205637_75205739_75206927_75207062_75209235_75209345_75219493_75219587_75231114_75231224_75231855_75231930_75232969_75233011_75239037
11798	chr1	-	2380	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	40	5782	4	-5	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	2	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTTGCCAGACTTAATA	NA	False	NA	NA	False	NA	NA	NA	86287082	86278222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
11799	chr9	+	2309	11	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	1280	junction_10	448.30593348739	7	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAAAAAAAAGTGACAAC	1178	False	NA	NA	False	NA	NA	NA	108437667	108442760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439580_108439990_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
11800	chr17	+	4213	27	FSM	ENSMUSG00000035842.11	ENSMUST00000224497.2	4141	27	-72	0	-15	0	multi-exon	FALSE	canonical	3	130	junction_22	18.327114778237	204	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCATGATCAAGTATGAGA	NA	False	NA	NA	False	NA	NA	NA	66430535	66459169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
11801	chr2	-	4426	19	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	3	-1	intron_retention	FALSE	canonical	3	40	junction_17	69.6609956933409	6	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTTCAGTACTGTCATT	NA	False	NA	NA	False	NA	NA	NA	11782356	11747386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782214
11802	chrX	+	3536	19	Intergenic	novelGene_3966	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCGCCCCGCCCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	84746205	84820270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_84748001_84749841_84749933_84754657_84754738_84755947_84756092_84756204_84756326_84756879_84756964_84757946_84758048_84759272_84759349_84773806_84773891_84774490_84774530_84780436_84780507_84780919_84780956_84783900_84783965_84784670_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84820031
11803	chr9	-	2634	7	Antisense	novelGene_ENSMUSG00000032349.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	108	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGATGCAAGAGGAAGGCGC	NA	False	NA	NA	False	NA	NA	NA	77891798	77824709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_77824790_77868145_77868334_77883064_77883143_77884027_77884202_77887106_77887229_77888751_77888885_77889939
11804	chr8	+	2502	19	NIC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	12	151	combination_of_known_junctions	FALSE	canonical	3	5	junction_17	246.100476319012	14	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACTTATTTTTAG	NA	False	NA	NA	False	NA	NA	NA	69246677	69280304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69276841_69276920_69277703_69277782_69279928
11805	chrX	-	3663	21	NIC	ENSMUSG00000025059.17	novel	4279	21	NA	NA	3	-663	combination_of_known_junctions	FALSE	canonical	3	6	junction_17	45.7159436083299	219	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATCTGCATTTCTCATT	NA	False	NA	NA	False	NA	NA	NA	84820240	84746205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84793217_84793302_84797937_84798016_84804180_84804288_84804939_84805014_84820031
11806	chr10	+	2411	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	480.72591954483	6	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1621	False	NA	NA	False	NA	NA	NA	79690498	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694627_79695292_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
11807	chr13	+	2196	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588064	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615364_3615418
11808	chr9	+	5495	36	FSM	ENSMUSG00000035024.17	ENSMUST00000073127.14	5499	36	4	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	46.2265053396681	271	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCTAGCATTTATTATA	NA	False	NA	NA	False	NA	NA	NA	26941474	27006607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_26941796_26941918_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
11810	chr10	-	4289	19	NIC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	198	-4	intron_retention	FALSE	canonical	3	320	junction_13	27.398296784046	312	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTTTGCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	61219111	61155438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
11811	chr3	+	2045	13	NIC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	2432	junction_7	93.499071593727	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3811	False	NA	NA	False	NA	NA	NA	88204429	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88204574_88206648_88206711_88208106_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
11812	chrX	+	3208	8	Antisense	novelGene_ENSMUSG00000036782.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGAAGTGGCGCTCTTC	NA	False	NA	NA	False	NA	NA	NA	23085523	23227931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_23087091_23094811_23094927_23101464_23102259_23113597_23113802_23114362_23114486_23127675_23127810_23181368_23181439_23227730
11813	chr9	+	2390	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	114.995898669366	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385301	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386083_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
11814	chr10	+	2584	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	-9	-3	-9	3	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	1469	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTCACTTTGACTTCA	NA	False	NA	NA	False	NA	NA	NA	85707685	85724963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
11815	chr18	-	4571	26	NNC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	419.591008483261	1	201	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTAAATATAAAGGTTTG	NA	False	NA	NA	False	NA	NA	NA	60982001	60946840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956051_60960404_60960520_60961436_60961632_60961727_60961908_60962086_60962188_60964584_60964749_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
11817	chr6	-	2868	11	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-8	-24	intron_retention	FALSE	non_canonical	0	0	junction_6	301.589141051199	2	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9164	False	NA	NA	False	NA	NA	NA	88495818	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489157_88491314_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
11819	chr1	+	3074	15	NIC	ENSMUSG00000026192.14	novel	2845	16	NA	NA	-2	-227	intron_retention	FALSE	canonical	3	576	junction_4	31.119011185172	99	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTGTGGTTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	71596335	71618563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615959_71616944_71617101_71617710
11820	chr5	-	1019	5	ISM	ENSMUSG00000037364.13	ENSMUST00000199473.2	2004	9	-162	2338	5	729	5prime_fragment	FALSE	canonical	3	670	junction_3	24.2590189414164	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTTAGCCTCTTGGT	8296	False	NA	NA	False	NA	NA	NA	137305897	137300185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
11821	chrX	+	2682	11	NIC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	26	30	intron_retention	FALSE	canonical	3	2711	junction_3	172.231123784292	12	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATAAAGTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	161543483	161561782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
11823	SIRV3	+	2085	4	ISM	SIRV3A	SIRV307	779	5	-1	1117	-1	0	5prime_fragment	FALSE	canonical	3	1417	junction_3	833.260396808158	320	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1962	7822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV3_+_2006_4003_4081_4574_4775_6057
11824	chr8	+	3241	12	FSM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	-46	-4	-46	4	multi-exon	FALSE	canonical	3	18	junction_1	79.5842502795747	45	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGTTACTAGTCTGCCA	NA	False	NA	NA	False	NA	NA	NA	124170000	124190005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124170185_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
11825	chr11	-	3788	2	NNC	ENSMUSG00000051232.14	novel	1054	2	NA	NA	997	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	0	22	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATTTTTATCTTTGGTC	2755	False	NA	NA	False	NA	NA	NA	78401874	78397885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78400135_78400335
11827	chr2	-	3343	7	NNC	ENSMUSG00000026753.6	novel	4115	7	NA	NA	-9	-568	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	169.834968915906	5	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGAGAACTGTCTACTTT	NA	False	NA	NA	False	NA	NA	NA	39116341	39084933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094912_39096670_39096730_39100969_39101066_39116178
11829	chr2	+	2609	11	NNC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_10	3442.7234582522	122	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAATGTGTGTGTGGTTT	7475	False	NA	NA	False	NA	NA	NA	75489604	75499741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75498344
11831	chr14	+	4016	3	NIC	ENSMUSG00000040618.8	novel	2417	9	NA	NA	55	1021	intron_retention	FALSE	canonical	3	1574	junction_1	39	9	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTTCCGCAACTCTGAA	8946	False	NA	NA	False	NA	NA	NA	55777777	55783844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55782505_55782663
11832	chr1	-	2749	9	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-829	32	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	146.829620649241	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTTCCTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	13198216	13183648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333_13197445_13198120
11833	chr18	-	5420	29	Antisense	novelGene_ENSMUSG00000024542.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	19	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGGGCGGATCCGCGGCG	NA	False	NA	NA	False	NA	NA	NA	67988396	67933203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_67933256_67933723_67933896_67936058_67936225_67940325_67940475_67943144_67943200_67945396_67945521_67946943_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956413_67957653_67957863_67961421_67961544_67962901_67963033_67967564_67968389_67968478_67968594_67970986_67971154_67974048_67974931_67976205_67976354_67980420_67980658_67983185_67983307_67983478_67983623_67983743_67983805_67984733_67984869_67985020_67985119_67985972_67986092_67987119_67987299_67988355
11834	chr16	+	3575	8	NIC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	24	-29	intron_retention	FALSE	canonical	1	126	junction_1	226.263256461339	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACAGTTACGAACTCAAG	NA	False	NA	NA	False	NA	NA	NA	38383197	38411478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38408666_38411273
11835	chr12	-	2593	11	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	13	-44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	592.004763494349	24	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCATCATTTTTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	108860087	108826003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826083_108826259_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
11836	chr15	-	4222	30	FSM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	155	5	140	-5	multi-exon	FALSE	canonical	3	172	junction_15	17.8822280065433	301	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTTGCAGTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	103275035	103252717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103253780_103254378_103254502_103255007_103255110_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967_103260106_103260441_103260597_103260684_103260741_103260910_103261013_103261342_103261389_103261569_103261762_103262000_103262210_103262473_103262527_103262694_103262752_103264352_103264397_103264503_103264549_103264742_103264869_103265205_103265252_103265346_103265409_103265618_103265740_103265874_103265988_103267476_103267608_103274726
11837	chrX	-	3908	19	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	20.1286755711078	15	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTGCATCATCTAATAC	NA	False	NA	NA	False	NA	NA	NA	47683312	47630502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
11838	chr18	+	3672	12	NNC	ENSMUSG00000024581.14	novel	1129	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	104.516201440908	593	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	NA	False	NA	NA	NA	63110949	63132521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_63111096_63113536_63113605_63115689_63115796_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63125411_63125562_63127382_63127463_63128033_63128164_63129887
11839	chr15	-	2460	18	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	21	292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	747.368657380414	3	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAAAACAGAGTTGAATT	NA	False	NA	NA	False	NA	NA	NA	11399730	11383798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11392088_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
11840	chr9	+	2616	5	Antisense	novelGene_ENSMUSG00000032494.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACTTCGGAGGAATATA	2163	False	NA	NA	False	NA	NA	NA	110768859	110775162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_110769895_110771401_110771506_110771596_110771707_110772213_110773319_110774900
11841	chr2	+	3321	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	2	0	intron_retention	FALSE	canonical	3	154	junction_18	127.170586318894	672	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	495	False	NA	NA	False	NA	NA	NA	31462664	31507532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
11843	chr7	+	3001	30	NIC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_23	118.925830461724	59	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGCAGTGTCTCGGTGT	NA	False	NA	NA	False	NA	NA	NA	118339965	118440709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
11844	chr6	-	2097	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	158	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.44491542262	1	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8643	False	NA	NA	False	NA	NA	NA	145021752	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945283_144945580_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
11845	chr2	+	2753	18	NNC	ENSMUSG00000027469.17	novel	3483	18	NA	NA	7	-643	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_8	204.415700342984	14	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGGGTTGTGGTTTCA	2732	False	NA	NA	False	NA	NA	NA	152689921	152735931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722997_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
11846	chr4	+	2112	10	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	48	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	915.386230296963	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTGTGTCACTGCAGG	6	False	NA	NA	False	NA	NA	NA	40722606	40733899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722634_40723702_40723845_40723972_40724032_40724103_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
11847	chr16	-	2800	20	Antisense	novelGene_ENSMUSG00000006998.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGGGGGTTGTCGCGGAG	NA	False	NA	NA	False	NA	NA	NA	20482155	20470533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20470599_20470990_20471047_20471341_20471506_20473295_20473418_20473565_20473791_20474000_20474162_20474306_20474452_20474628_20474691_20475290_20475439_20475616_20475723_20476229_20476359_20476722_20476810_20478153_20478318_20478427_20478526_20478701_20478912_20480311_20480488_20480569_20480658_20480839_20480996_20481391_20481485_20481810
11848	chr13	-	1969	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	159	33	159	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	8	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAACAGTACAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	96217725	96215756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_96215800_96217700
11849	chr8	-	2399	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	773	-2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	2024.54554571308	1	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATGAGTTCAATTTCT	NA	False	NA	NA	False	NA	NA	NA	43759200	43748105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758431
11851	chr15	-	1820	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	76	3	60	-3	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	7511	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2821	False	NA	NA	False	NA	NA	NA	77854937	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
11852	chr9	-	1873	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	3	6	3	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	279	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTGTGTGGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	89996765	89973723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
11853	chr1	+	2369	16	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-1	-2	intron_retention	FALSE	canonical	2	12	junction_8	718.051548753059	29	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCAGTTTTGTGATCTCT	NA	False	NA	NA	False	NA	NA	NA	59724163	59750667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742384_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
11854	chrX	+	2308	17	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-485	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	753.704175638559	10	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTACCCAGATGTAGCCA	NA	False	NA	NA	False	NA	NA	NA	20529169	20548933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542296_20548739
11855	chr13	-	3418	3	NNC	ENSMUSG00000021579.5	novel	2755	2	NA	NA	4337	9243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	928	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCGCACCACCACTCACGC	NA	False	NA	NA	False	NA	NA	NA	74507787	74498453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74498527_74500973_74501106_74504574
11856	chr4	-	4847	25	FSM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	59	0	0	0	multi-exon	FALSE	canonical	3	155	junction_18	17.726657186283	208	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATATGCCTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	101122420	101009563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_101010788_101011734_101011846_101012212_101012331_101013589_101013763_101014148_101014274_101014950_101015144_101016010_101016106_101016211_101016363_101017228_101017381_101019003_101019140_101020045_101020174_101020854_101020943_101021654_101021799_101023739_101023847_101028431_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651_101036992_101038976_101039141_101041533_101041688_101046275_101046400_101048671_101048871_101050979_101051061_101122238
11858	chr16	-	3456	16	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	-411	-7	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_15	276.123402364474	2	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	3711	False	NA	NA	False	NA	NA	NA	21980611	21877811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21980487
11860	chr10	+	4629	9	Antisense	novelGene_ENSMUSG00000039531.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAGAGATCCCAGCATGC	2628	False	NA	NA	False	NA	NA	NA	33800507	33827217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_33803616_33804005_33804158_33805814_33805978_33806146_33806340_33816152_33816275_33819644_33819759_33824926_33825494_33825742_33825860_33827124
11861	chr4	+	5966	8	NNC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	6	0	intron_retention	TRUE	non_canonical	0	0	junction_4	55.6838744840104	1	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAGCTGTTTTTAAATGC	NA	False	NA	NA	False	NA	NA	NA	148123539	148144005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148123590_148126040_148126287_148127881_148129012_148132529_148132724_148138036_148138139_148139441_148139562_148139829_148140077_148140128
11862	chr9	-	3105	29	FSM	ENSMUSG00000032422.19	ENSMUST00000174806.9	3082	29	-13	-10	2	-5	multi-exon	TRUE	canonical	3	13	junction_14	53.7773542165344	297	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTACGGCCTTTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	88320980	88258809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88282775_88282803_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
11863	chr11	+	3822	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	-8	1	-8	-1	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	536	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGAGCTATTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	72498100	72577306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
11865	chr8	+	3174	15	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	537.587259172397	1	84	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8842	False	NA	NA	False	NA	NA	NA	120637567	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683351_120683666_120683720
11866	chr2	+	3450	12	NIC	ENSMUSG00000033411.17	novel	5053	13	NA	NA	-9	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	120.078830856378	1	93	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCTTTACATATGCTCT	NA	False	NA	NA	False	NA	NA	NA	121786951	121843086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121841043
11869	chr2	+	2680	12	Antisense	novelGene_ENSMUSG00000037376.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	35	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCACGCCGCTTCCGCTT	NA	False	NA	NA	False	NA	NA	NA	132646129	132657952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_132647531_132648628_132648718_132648816_132648920_132650123_132650210_132650580_132650936_132651747_132651874_132652125_132652210_132652336_132652428_132652907_132653019_132653967_132654095_132657723_132657771_132657892
11870	chr13	+	482	5	Intergenic	novelGene_1509	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATGAGTCACATGCTC	5623	False	NA	NA	False	NA	NA	NA	97595595	97619126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_97595669_97596694_97596776_97618048_97618131_97618598_97618767_97619048
11871	chr14	+	3436	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	164.122130134848	1	69	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56640126	56726892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56640210_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668937_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724513_56726767
11872	chr16	-	3077	8	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	21	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	82.647024218933	48	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	7610	False	NA	NA	False	NA	NA	NA	22258345	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22202415_22230464_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
11873	chr10	+	3567	28	NNC	ENSMUSG00000040675.18	novel	3669	28	NA	NA	35	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	90.2630510305535	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGTTCAGCTAGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	3923178	4106109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968464_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
11874	chr12	-	2426	25	NIC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-10	-2324	combination_of_known_splicesites	FALSE	canonical	1	1	junction_24	447.968493125726	58	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTGTCTTCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	13299174	13269297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13299104
11875	chr15	-	3258	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	-68	-3	-63	3	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	394	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6931	False	NA	NA	False	NA	NA	NA	98560838	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
11878	chr1	+	3511	13	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	3	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	497.089605995628	1	120	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGCACCCCAATAAATT	886	False	NA	NA	False	NA	NA	NA	58432285	58446476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193_58445034_58445133
11879	chr14	+	2079	10	NNC	ENSMUSG00000021939.9	novel	801	6	NA	NA	229	1272	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	2355.85194676188	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63360191	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360420_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
11881	chr13	+	3872	12	Antisense	novelGene_ENSMUSG00000041747.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACAGTCCAGGAGCCGGAA	NA	False	NA	NA	False	NA	NA	NA	98384737	98399491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_98385885_98387079_98387138_98387291_98387427_98388436_98388538_98389251_98389409_98390153_98391565_98393610_98393734_98394342_98394523_98395612_98395800_98395882_98395975_98397306_98397478_98399381
11882	chr8	-	3149	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	4	-6	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_3	2003.33338879645	1	128	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTAGAAATGAGTTCAAT	NA	False	NA	NA	False	NA	NA	NA	43759983	43748109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460
11883	chr15	-	2997	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	972.418891219211	1	80	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACACAGTGAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	38300954	38294661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38295300_38295345_38296409_38296858_38297772_38297865_38298097_38300802
11884	chr2	-	5692	44	Genic_Genomic	ENSMUSG00000084892.2	novel	2358	2	NA	NA	-20277	19645	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	173	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCGCCCCCATGCGCCG	3365	False	NA	NA	False	NA	NA	NA	30234275	30176433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_30176481_30186657_30186714_30188426_30188500_30190809_30190896_30191019_30191100_30192010_30192056_30194066_30194161_30194292_30194413_30197531_30197751_30199234_30199344_30199887_30200091_30202611_30202700_30205125_30205194_30206499_30206619_30207192_30207316_30211889_30212045_30212181_30212310_30212496_30212584_30212680_30212757_30213528_30213658_30215237_30215358_30215481_30215549_30216458_30216585_30217455_30217599_30219317_30219425_30220567_30220774_30220856_30221029_30222396_30222465_30222829_30222900_30223281_30223478_30226335_30226414_30226653_30226738_30226941_30227083_30227229_30227417_30229509_30229712_30229827_30229919_30230598_30230756_30231699_30231839_30232381_30232454_30232542_30232806_30232932_30233064_30233284_30233363_30233475_30233600_30233710
11885	chr11	-	3070	14	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9028	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	534.09677114428	1	78	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	396	False	NA	NA	False	NA	NA	NA	106615248	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579880_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106615196
11886	chr9	+	2237	17	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	39	35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	186.22160018376	40	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCCTTGGTAACTGAAA	NA	False	NA	NA	False	NA	NA	NA	98445822	98470349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464940_98469821_98469883_98470097
11887	chr15	+	4485	10	FSM	ENSMUSG00000022255.17	ENSMUST00000163333.9	1593	10	-502	-2390	81	-2091	multi-exon	FALSE	canonical	3	69	junction_9	216.816757131084	2	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTGTTACATTCTCTGT	139	False	NA	NA	False	NA	NA	NA	34082951	34143679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34131309_34131435_34134436_34134545_34136832_34136974_34140837
11888	chr2	+	2353	16	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	18	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	591.224176321188	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157120996	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162121_157167627
11889	chr6	-	2210	9	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	136	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	1721.14148169173	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8621	False	NA	NA	False	NA	NA	NA	145021774	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_145021614
11890	chr11	+	3405	28	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-2	640	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	166.068036035212	947	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGATTTTTAAGGTATGT	NA	False	NA	NA	False	NA	NA	NA	29080745	29112468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088661_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
11891	chr7	-	2816	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.187751916423	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACGTTTACTTACTGCTG	NA	False	NA	NA	False	NA	NA	NA	42155155	42122813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123158_42124313_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42155033
11892	chr11	-	3424	15	NIC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_14	117.727569465461	1	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGCATCTTTCAATACA	3552	False	NA	NA	False	NA	NA	NA	115494706	115475081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482521_115483257_115483357_115494653
11893	chr6	-	5259	25	NNC	ENSMUSG00000040029.16	novel	5360	25	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	66.9828828673581	157	29	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTCCCAGAAACTGAACT	NA	False	NA	NA	False	NA	NA	NA	148732953	148672198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148674308_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691359_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725975_148732661
11894	chr17	-	2230	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	81	1822	-10	938	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGAAGTCATGTTTACAG	8756	False	NA	NA	False	NA	NA	NA	24470302	24442993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
11895	chr8	-	2441	17	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	16	4	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_13	1142.02878001169	34	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTATGGTACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	26337706	26306909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26328856_26328983_26329770_26329917_26330039_26330104_26337606
11896	chr2	-	3646	18	NIC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	9	-4	combination_of_known_junctions	FALSE	canonical	1	3	junction_15	80.1041709319311	3	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTCCTCAGTGGCCGCTC	NA	False	NA	NA	False	NA	NA	NA	155953846	155913770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155940149_155940293_155945268_155945350_155953705
11897	chr7	+	3703	16	FSM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	-9	-16	-9	16	multi-exon	TRUE	canonical	3	89	junction_1	61.1041369757855	439	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGGTGTGGTGGGT	1018	False	NA	NA	False	NA	NA	NA	45084258	45106059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
11898	chr2	-	3740	22	NNC	ENSMUSG00000034032.16	novel	5458	26	NA	NA	0	-773	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	169.768603354116	1	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTCACCTCTCTATGTT	482	False	NA	NA	False	NA	NA	NA	119618000	119595219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600451_119600852_119600911_119601370_119601573_119601676_119601836_119602968_119603140_119603714_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605531_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617915
11899	chr9	+	4031	9	FSM	ENSMUSG00000057551.11	ENSMUST00000208694.2	3988	9	-43	0	-17	0	multi-exon	FALSE	canonical	3	126	junction_2	38.1313519298752	186	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	NA	False	NA	NA	NA	19533380	19561027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
11900	chr2	+	2588	17	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-10	2	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	578.05134665962	22	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCTTCTGTGATAAAAT	NA	False	NA	NA	False	NA	NA	NA	157120926	157168241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121034_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
11901	chr16	+	2533	3	Antisense	novelGene_ENSMUSG00000039738.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACCAGGCAGCACATG	NA	False	NA	NA	False	NA	NA	NA	3798835	3805261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_3798861_3799450_3799552_3802854
11902	chr17	+	3506	10	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	65.7364735182629	1	67	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATTTTCCTGCAGT	9389	False	NA	NA	False	NA	NA	NA	36152566	36170556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36162004_36162049_36163306_36163849_36169825
11905	chr12	+	2427	12	NIC	ENSMUSG00000004789.11	novel	2259	16	NA	NA	7	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	102.775370879915	23	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCGGGATCTGTGCTCC	NA	False	NA	NA	False	NA	NA	NA	85157638	85180863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85176565_85176640_85177233_85177318_85177670_85177839_85179392
11906	chr8	+	2766	10	NIC	ENSMUSG00000038482.12	novel	1700	11	NA	NA	3	-2	intron_retention	FALSE	canonical	3	905	junction_5	64.6804109105342	756	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACAAGCTCTGTGTTTC	3016	False	NA	NA	False	NA	NA	NA	13389663	13428440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13423103_13423844_13423924_13427141
11907	chr13	+	3902	11	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	4475	313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.9177977950463	20	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTGAAGGGAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	104320080	104340193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_104320174_104320495_104320549_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
11908	chrX	-	2648	13	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	440.027145627277	470	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	NA	False	NA	NA	NA	93585617	93579079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585538
11909	chr6	-	1410	2	Antisense	novelGene_ENSMUSG00000038279.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGCCACTACAAGGAGCA	NA	False	NA	NA	False	NA	NA	NA	125121712	125117804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_125118471_125120968
11911	chr8	+	2514	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	21	1	intron_retention	FALSE	canonical	0	0	junction_1	426.619872433945	1	53	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGTAGTGCTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	75836224	75854317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836382_75836763_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
11913	chrX	-	3897	6	Antisense	novelGene_ENSMUSG00000015291.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	90	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGCACTGAACCAAAGATG	NA	False	NA	NA	False	NA	NA	NA	73355464	73348869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73349048_73350184_73350291_73350448_73350549_73350706_73350844_73351277_73351866_73352676
11915	chr3	+	3500	9	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	86	-2	intron_retention	FALSE	canonical	3	7	junction_5	524.677043522966	7	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCATCATGTTGAGATC	NA	False	NA	NA	False	NA	NA	NA	97066178	97083832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97075890_97078957_97079059_97080399_97080554_97081118_97081215_97082943_97083110_97083646
11916	chr6	-	2497	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	9	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	15	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTTGTCTCATGACT	NA	False	NA	NA	False	NA	NA	NA	148847932	148822560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148822728_148822866_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
11917	chr18	-	3829	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	-1191	0	1191	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	581	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTATTTTTTTTCATGT	371	False	NA	NA	False	NA	NA	NA	73948509	73901782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
11918	chr15	-	2613	14	NIC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	28	-10	intron_retention	FALSE	canonical	3	559	junction_9	45.6831122578369	1606	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCTTGACCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	76361449	76337198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76337579_76337662_76337771_76337843_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
11919	chr2	-	5216	4	NIC	ENSMUSG00000085385.8	novel	2007	5	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	64	junction_3	12.328828005938	18	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGGTCTCGTGAGTTCT	8358	False	NA	NA	False	NA	NA	NA	158203431	158195620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_158199184_158201101_158202520_158202862_158202991_158203324
11922	chr1	+	1718	1	Intergenic	novelGene_341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCCAACATGTGAAGACT	NA	False	NA	NA	False	NA	NA	NA	13697871	13699589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_13697900_13699600
11924	chr7	+	2678	19	Antisense	novelGene_ENSMUSG00000084453.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGCCGGAACCTGAGGAAA	NA	False	NA	NA	False	NA	NA	NA	126146356	126165380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126146519_126146605_126146695_126146777_126146846_126146935_126147103_126151150_126151511_126155454_126155680_126155881_126156073_126156344_126156445_126156547_126156672_126156857_126156998_126157806_126157930_126158064_126158185_126161738_126161865_126162176_126162286_126162415_126162470_126162798_126162922_126163579_126163782_126163876_126163943_126165251
11927	chr16	-	1912	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	-6	multi-exon	FALSE	canonical	0	0	junction_1	0	18	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45974611_45974785
11928	chr17	-	2651	13	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-12	477	intron_retention	FALSE	non_canonical	0	0	junction_7	232.404819227141	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCCAATACTAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	79244482	79229130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233611_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243315_79244303
11929	chr3	+	3338	20	NNC	ENSMUSG00000034349.15	novel	4316	24	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	275.739830807283	1	38	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	68912322	68941956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_68912424_68913408_68913547_68923413_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
11930	chr6	+	4024	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	-9	428	-9	-428	multi-exon	TRUE	canonical	3	458	junction_6	33.5480583972042	660	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTTGGAGCATTGCTG	NA	False	NA	NA	False	NA	NA	NA	108760050	108801811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
11932	chr1	+	2834	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	238	804	4	-804	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGGTTTTATAGATCAGT	895	False	NA	NA	False	NA	NA	NA	58432294	58445708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
11933	chr9	+	3500	12	Fusion	ENSMUSG00000103970.2_ENSMUSG00000006673.15	novel	721	3	NA	NA	124	2	multi-exon	FALSE	canonical	3	19	junction_4	287.231728950167	2	34	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1807	False	NA	NA	False	NA	NA	NA	108394945	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_108395176_108395965_108396026_108405787_108406118_108407086_108407215_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
11934	chr6	-	3758	6	NIC	ENSMUSG00000079477.10	novel	1657	8	NA	NA	-1	-46	intron_retention	FALSE	canonical	3	112	junction_5	686.398251746025	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTTTCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	88022214	87976470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87992701_88022054
11935	chr4	+	3440	17	NNC	ENSMUSG00000028274.18	novel	4157	16	NA	NA	31	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	76.3990346797654	355	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACACCTGTGTCTTTCCT	12	True	NA	NA	False	NA	NA	NA	33310358	33502608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237_33501184_33501846
11936	chr5	-	2933	19	ISM	ENSMUSG00000037364.13	ENSMUST00000199243.5	2988	20	289	4	44	0	3prime_fragment	FALSE	non_canonical	0	0	junction_3	199.572567945956	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8554	False	NA	NA	False	NA	NA	NA	137305639	137293976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307
11938	chr13	-	4702	2	NNC	ENSMUSG00000046351.12	novel	488	2	NA	NA	3814	-8	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	0	69	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTCCATTTTTGTCTCCA	8101	False	NA	NA	False	NA	NA	NA	23543566	23537280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_23541884_23543467
11939	chr15	-	3193	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.638995176448	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033518	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
11940	chr10	+	2689	11	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_1	645.5070022858	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1561	False	NA	NA	False	NA	NA	NA	79690438	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79694546_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79698282_79698376_79698486_79698704_79698811_79698890_79698978
11941	chr4	-	2632	13	NNC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-38	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	304.097298025922	1444	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGGGCTTTGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	132080954	132059237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063256_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132079432_132079555_132079973_132080010_132080907
11942	chr3	+	1888	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	182	3	27	-3	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	7051	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAACGGTTTGGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	8574601	8626663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
11944	chr14	+	3862	23	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	463	junction_11	41.2351651260815	1	107	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32043971	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068811_32069462
11945	chr12	+	2677	14	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	94.185075263371	1418	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157631	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165372_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
11946	chr6	-	2237	6	FSM	ENSMUSG00000030304.12	ENSMUST00000148437.8	817	6	-45	-1375	0	1375	multi-exon	FALSE	canonical	3	910	junction_4	66.0593672388708	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGGTTTTTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	148113520	148099080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
11947	chr3	+	3982	25	NNC	ENSMUSG00000025437.16	novel	4183	24	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	141.698231777566	6	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAAACTGAATGTTG	NA	False	NA	NA	False	NA	NA	NA	152052153	152098965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152052277_152061985_152062102_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
11949	chr11	+	3438	17	Antisense	novelGene_ENSMUSG00000018921.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	292	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCGTGGCGTGATGACG	NA	False	NA	NA	False	NA	NA	NA	70283705	70300854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_70283848_70284586_70286017_70286125_70286335_70286485_70286541_70287110_70287275_70287384_70287530_70287643_70287759_70287838_70287930_70288275_70288364_70288468_70288602_70288894_70289043_70289306_70289366_70292474_70292550_70292744_70292893_70296452_70296557_70297080_70297148_70300589
11950	chr9	+	5664	21	NIC	ENSMUSG00000032293.9	novel	5770	22	NA	NA	17	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	67.9124436314877	2	128	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTTGACTCGTTGTGTT	2643	False	NA	NA	False	NA	NA	NA	54771089	54819810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
11952	chr2	+	2627	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	47.0063573693612	30	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	152068794	152123767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152121558_152123095
11953	chr6	+	2514	13	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	517.483628297124	10	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	NA	False	NA	NA	NA	71808312	71852234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
11954	chr16	-	2422	11	Antisense	novelGene_ENSMUSG00000004069.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	493	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCACTGCCACCCTCAAC	NA	False	NA	NA	False	NA	NA	NA	4525559	4502043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_4502206_4505097_4505237_4507846_4507927_4511073_4511281_4512230_4512380_4514251_4514399_4515112_4515179_4517611_4517740_4519030_4519147_4520072_4520170_4524428
11956	chrX	+	2282	10	ISM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	7666	0	-5370	0	3prime_fragment	FALSE	canonical	3	3075	junction_2	267.857249617851	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100480826	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
11957	chr3	+	2576	18	NNC	ENSMUSG00000027774.17	novel	4078	18	NA	NA	-5	264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	179.746264837919	6	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATATATAATATTATATA	NA	False	NA	NA	False	NA	NA	NA	67337443	67382401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376929_67380806_67380957_67381885_67381940_67382051
11958	chr6	-	3763	26	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	34	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.507914357161	2	103	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3429	False	NA	NA	False	NA	NA	NA	125168630	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145132_125147872_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150473_125150677_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
11959	chr3	-	4024	15	NIC	ENSMUSG00000039735.17	novel	5357	15	NA	NA	-25	1	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	12.9545910229319	248	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGATGTGTACTTATCT	NA	False	NA	NA	False	NA	NA	NA	122413389	122332372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
11960	chr5	-	4190	34	FSM	ENSMUSG00000060261.17	ENSMUST00000111261.12	4381	34	185	6	115	0	multi-exon	FALSE	canonical	3	228	junction_23	69.7198249746108	378	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	820	False	NA	NA	False	NA	NA	NA	134343415	134266696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134301377_134301441_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
11961	chr7	+	6582	9	FSM	ENSMUSG00000029461.18	ENSMUST00000107042.9	6388	9	28	-222	-21	-53	multi-exon	FALSE	canonical	0	0	junction_3	17.2699160391705	197	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAACAACTATTAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	100355869	100490810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100467942_100467970_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
11962	chr14	+	2425	9	ISM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	-80	908	43	-18	intron_retention	FALSE	canonical	3	1356	junction_5	110.491444804564	103	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACGCGTTTGTTTCCAC	8934	False	NA	NA	False	NA	NA	NA	55777765	55786373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496
11963	chr2	-	2299	5	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	19897	-3	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_4	224.462691777498	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75514936	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75514831
11965	chr4	+	3077	4	NNC	ENSMUSG00000028729.16	novel	788	6	NA	NA	2078	-11	intron_retention	FALSE	canonical	0	0	junction_3	1144.80692210036	2	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTATAAGAGGTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	118480500	118484962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118480585_118480807_118480884_118481331_118483264_118483977
11967	chr4	-	946	6	ISM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	91	10783	17	1989	5prime_fragment	FALSE	canonical	3	1390	junction_1	475.588057040965	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTATCCTAAGGTCTGT	9832	False	NA	NA	False	NA	NA	NA	43000416	42990745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
11968	chr4	-	2671	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	239.189647560257	1	106	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147727022	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702962_147725321_147725463_147726819
11969	chr12	-	3520	21	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	134	-406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	149.192325539888	1	74	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAGTTATTTTAAAATC	2812	False	NA	NA	False	NA	NA	NA	59058669	59005574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006756_59006804_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
11970	chr10	-	2679	10	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGAGGCCCCGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	128198198	128173615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173834_128186317_128186409_128187066_128187132_128188540_128188677_128188907_128189079_128194200_128194408_128195051_128195167_128195300_128195403_128195810_128196021_128196834
11971	chr3	+	2821	16	NIC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	-5	1	combination_of_known_splicesites	TRUE	canonical	3	13	junction_3	275.5638744264	68	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742293	157772727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_157742514_157746077_157746260_157747222_157747297_157747499_157747571_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
11972	chr10	-	2241	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	20	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	784.177086173358	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGTGTTCTCTTTGTG	6	True	NA	NA	False	NA	NA	NA	128401836	128393632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394574_128394683_128394841_128394930_128394985_128395294_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
11973	chr11	-	672	6	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	-13	500	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	351.709311790291	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTAAGGTGAGTTCTCAC	NA	False	NA	NA	False	NA	NA	NA	35725346	35716821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35716877_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
11974	chr10	-	1595	3	Antisense	novelGene_ENSMUSG00000089260.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATGATATAAAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	44240292	44195454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_44195549_44222950_44223069_44238909
11975	chr3	+	2382	8	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_2	459.239655544346	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCCTCTTGGAATAA	NA	False	NA	NA	False	NA	NA	NA	122068044	122078920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122068128_122068846_122069016_122069054_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
11976	chrX	-	3843	27	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	704	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_9	128.162208841561	2	117	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	59223745	59101315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
11977	chr18	-	4504	11	FSM	ENSMUSG00000024293.17	ENSMUST00000025142.13	4545	11	18	23	18	-23	multi-exon	FALSE	canonical	3	113	junction_3	14.2393820090621	245	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACAGGCTTCTTAAAG	20	False	NA	NA	False	NA	NA	NA	10610334	10566529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
11978	chr5	+	2191	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	380	17	380	-17	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	2	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTACTGGATCATTCAC	NA	False	NA	NA	False	NA	NA	NA	129864441	129875195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
11979	chr10	+	2391	12	NNC	ENSMUSG00000019970.16	novel	859	8	NA	NA	-6114	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	277.858487081059	11	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGTGTCATGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	21862007	21875798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21862107_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
11981	chr15	+	3326	9	NIC	ENSMUSG00000022351.15	novel	2758	11	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	657	junction_1	56.6070611761466	136	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGTTCTTTTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	59186920	59203038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
11982	chr16	+	3309	30	NNC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	34	264	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_29	122.144940315629	1	45	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAATTGTATATGACAAGA	NA	False	NA	NA	False	NA	NA	NA	29398243	29470961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470713
11983	chr9	+	3409	21	NNC	ENSMUSG00000033335.18	novel	3502	21	NA	NA	0	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_19	170.61137125057	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCTACGTGTGTGGG	5842	False	NA	NA	False	NA	NA	NA	21336203	21418428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415842_21416764_21417012_21417628
11984	chr19	-	2947	22	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	-14	-154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	176.755772676887	27	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGATGTAGAATATTTTT	NA	False	NA	NA	False	NA	NA	NA	37340024	37247982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37255221_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
11987	chr7	-	5605	18	NNC	ENSMUSG00000030766.16	novel	3036	20	NA	NA	5	52	intron_retention	FALSE	canonical	0	0	junction_9	70.6586413584065	11	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATGTTATTCTAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	122969121	122878555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_122879340_122882999_122886237_122891258_122891429_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122913676_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
11988	chr5	+	3167	24	NIC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	4	207	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	135.27563403829	5	40	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGCAGGACCCTCATC	NA	False	NA	NA	False	NA	NA	NA	121536061	121578201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121567395_121567525_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
11989	chr9	-	3396	28	NNC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	216.722620188823	13	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACTATAATGTTGTTTT	8311	False	NA	NA	False	NA	NA	NA	95393929	95343037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358284_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366461_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
11990	chr9	-	3072	23	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-1409	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	85.963198449123	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCAAACTTGTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	61855465	61824567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61855352
11991	chr1	+	2936	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	122.914459221502	537	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9766	False	NA	NA	False	NA	NA	NA	175708359	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721356_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
11992	chr2	+	2385	5	NNC	ENSMUSG00000027285.14	novel	3154	6	NA	NA	2791	-522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	134.007462478774	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACCCTACCCCCAACCT	NA	False	NA	NA	False	NA	NA	NA	120442866	120451519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120442903_120443531_120443602_120446335_120446469_120448353_120448438_120449457
11993	chr18	-	3027	9	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	897	-225	intron_retention	FALSE	non_canonical	0	0	junction_1	2129.72803061212	1	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	7329	False	NA	NA	False	NA	NA	NA	35080280	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071455_35071646_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996
11995	chr6	-	4112	16	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_14	84.3388930973658	273	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTTGCCCTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	39354610	39311706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349780_39349862_39354552
11996	chr6	+	2203	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	-38	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	497.121603723766	12	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2905	False	NA	NA	False	NA	NA	NA	122285919	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293067_122293286
11997	chr12	+	2339	19	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	264.909307798017	1278	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGGTGCCTGTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	21336387	21364836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21359575_21359666_21360197_21360286_21362298_21362369_21363767_21363865_21364648
11998	chr7	-	3313	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-38	-45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	361.339568859637	1	67	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGCAGCGCTTTGGACC	NA	False	NA	NA	False	NA	NA	NA	44198195	44182254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182370_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191231_44191337_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
11999	chr15	+	4098	4	NIC	ENSMUSG00000033669.9	novel	2960	5	NA	NA	4	2	intron_retention	FALSE	canonical	3	76	junction_3	12.3558353285671	6	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTGTAGCCTGTACTT	NA	False	NA	NA	False	NA	NA	NA	76763513	76776591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76764983_76765311_76765439_76772430_76772548_76774206
12000	chr4	+	2828	16	NIC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_10	149.820722494883	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5286	False	NA	NA	False	NA	NA	NA	108436664	108472030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
12001	chr1	-	2794	8	NNC	ENSMUSG00000026484.14	novel	3201	8	NA	NA	2	-106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	192.049419660245	102	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTATCTAAGCAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	151376560	151345262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151346295_151346408_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
12002	chr15	+	3315	21	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	56	1	combination_of_known_splicesites	FALSE	canonical	3	57	junction_20	64.8148131216931	16	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775690	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57833119
12004	chr17	+	3307	17	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	-2	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	525.653462368508	1	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATCTTTACCCAGCGCGT	NA	False	NA	NA	False	NA	NA	NA	71923207	71966011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933887_71937159_71937277_71938999_71939137_71940618_71940722_71945361_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
12005	chr5	-	2462	14	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	58	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	417.858728710749	300	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	NA	False	NA	NA	NA	24782407	24770342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778468_24778775_24779164_24779378_24781516_24781726_24782344
12006	chr15	-	3420	16	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	36	0	intron_retention	FALSE	canonical	1	2	junction_1	50.0048886498999	5	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	79212340	79170427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79171096_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
12008	chr9	+	4514	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	126	junction_2	37.6790961371725	174	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATGGGACTGATATTTG	NA	False	NA	NA	False	NA	NA	NA	19533389	19561025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19554021_19554904_19555001_19556520_19556604_19557997
12009	chr14	+	2558	9	FSM	ENSMUSG00000040618.8	ENSMUST00000226770.2	2417	9	-97	-44	43	-18	multi-exon	FALSE	canonical	3	1491	junction_4	96.0676031500734	31	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACGCGTTTGTTTCCAC	8934	False	NA	NA	False	NA	NA	NA	55777765	55786373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
12011	chr2	-	1424	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	23	2236	17	-2236	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	28	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCCTCCTTTACCTCT	NA	False	NA	NA	False	NA	NA	NA	163487028	163467427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
12012	chr9	-	3402	17	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCCACGCGGTT	8587	False	NA	NA	False	NA	NA	NA	21313086	21279307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299093_21299818_21300049_21303589_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310889_21310984_21311135_21311252_21311310_21311747
12013	chr9	+	2038	7	Antisense	novelGene_ENSMUSG00000032494.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	451	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACTTCGGAGGAATATA	1974	False	NA	NA	False	NA	NA	NA	110768670	110775162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_110769895_110771401_110771506_110771596_110771707_110772213_110772324_110772756_110772926_110773261_110773312_110774891
12014	chr4	-	2639	19	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	185.670099376472	256	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120427460	120397064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422518_120422637_120424446_120424625_120427347
12015	chr4	+	1678	10	Antisense	novelGene_ENSMUSG00000057236.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTCAGGCCTATAAAAAC	NA	False	NA	NA	False	NA	NA	NA	129203315	129222516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129203950_129211439_129211552_129211654_129211713_129212236_129212312_129214259_129214344_129215646_129215767_129215865_129216033_129216145_129216260_129216484_129216665_129222382
12018	chr17	-	2498	13	NIC	ENSMUSG00000023942.16	novel	2033	13	NA	NA	-287	0	intron_retention	FALSE	canonical	3	1453	junction_5	288.303791839249	93	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45904853	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257
12019	chr17	-	2988	11	NIC	ENSMUSG00000025728.17	novel	2987	11	NA	NA	6	-7	combination_of_known_junctions	FALSE	canonical	2	3	junction_10	83.7198303868325	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGGAGTACCAGCTTGG	NA	False	NA	NA	False	NA	NA	NA	26161830	26145408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26161767
12020	chr3	-	3353	4	NIC	ENSMUSG00000038975.15	novel	1169	9	NA	NA	0	-5	intron_retention	FALSE	canonical	3	938	junction_3	58.9406481131655	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGATCTTTAGTCTTCTGA	7076	False	NA	NA	False	NA	NA	NA	153617670	153613095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153616004_153616327
12021	chr15	-	2827	16	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	208.423244598315	87	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	81614081	81588453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594672_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
12022	chr14	-	4381	15	NNC	ENSMUSG00000021831.10	novel	4418	16	NA	NA	31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	176.639737711466	314	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATCTTTGGTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	45555998	45520548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45532002_45536498_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
12025	chr5	-	1895	2	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	19478	-1	3184	1	3prime_fragment	FALSE	canonical	3	674	junction_1	0	4	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGTAGTTTTAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	129845035	129842620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_129842963_129843482
12026	chr9	-	6211	7	NIC	ENSMUSG00000047036.9	novel	6189	7	NA	NA	24	-18	combination_of_known_junctions	FALSE	canonical	3	67	junction_3	36.0262250157977	225	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCCTCTGACATCTAT	NA	False	NA	NA	False	NA	NA	NA	122695026	122677992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_122683054_122683771_122683883_122685763_122685891_122686167_122686227_122686534_122686704_122690773_122691410_122694978
12027	chr17	+	2396	6	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	768.912634829211	2	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAGCCACTGGCTTAGTG	NA	False	NA	NA	False	NA	NA	NA	29251646	29262169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255431_29257470_29257599_29259748_29259788_29260180_29260268_29260357
12028	chr11	+	2209	11	FSM	ENSMUSG00000017421.19	ENSMUST00000165565.8	2311	11	-1	103	-1	-103	multi-exon	FALSE	canonical	3	18	junction_5	381.677992553933	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	NA	False	NA	NA	NA	80274103	80286968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
12029	chr17	-	3689	5	NNC	ENSMUSG00000096433.3	novel	4882	5	NA	NA	15	-1230	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_2	12.4373429638327	21	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCATTGTTTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	22444582	22417475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22420791_22421656_22421836_22424285_22424334_22442991_22443076_22444519
12030	chr7	+	1571	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	13	0	-12	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	4	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAACAGTGATGGCTCT	NA	False	NA	NA	False	NA	NA	NA	46495266	46505038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
12031	chr10	+	2657	8	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	16	-6	intron_retention	FALSE	canonical	0	0	junction_4	723.765493648266	51	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACACTGGTGATATTT	NA	False	NA	NA	False	NA	NA	NA	111309118	111334005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111330003_111330155_111330655_111330686_111331185_111331237_111331900
12033	chr11	-	3235	19	Antisense	novelGene_ENSMUSG00000020898.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAACCCCTACCCTGAAGA	5414	False	NA	NA	False	NA	NA	NA	68924651	68906952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_68906992_68911335_68911491_68911855_68912014_68913195_68913439_68913532_68913745_68914985_68915130_68916896_68917178_68917275_68917400_68918073_68918313_68918429_68918606_68918687_68918889_68920509_68920636_68921306_68921423_68921514_68921831_68921923_68922016_68922236_68922431_68924008_68924097_68924191_68924365_68924493
12034	chrX	+	2549	16	NNC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	131.373191921166	1084	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAACTCGACTACCTTCTG	NA	False	NA	NA	False	NA	NA	NA	47345744	47371325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361006_47361060_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
12035	chrX	-	2777	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	65	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	188.219857729598	1	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800253	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766909_149767270_149767564_149770880_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
12036	chr12	+	3245	7	NNC	ENSMUSG00000032705.10	novel	3310	9	NA	NA	-361	11	intron_retention	FALSE	canonical	0	0	junction_2	76.2138803339363	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATGTGAAGCTTTTCTT	3267	False	NA	NA	False	NA	NA	NA	80522492	80544907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80522963_80527228_80527385_80531019_80531147_80536175_80536508_80537554_80538005_80539315_80539673_80543554
12037	chr7	-	1848	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	1028.67083535016	2493	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	16121731	16060974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102481_16102577_16104211_16104386_16112289_16112402_16121565
12039	chr6	-	2982	21	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-35	0	intron_retention	FALSE	non_canonical	0	0	junction_1	126.540616009248	6	44	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3571	False	NA	NA	False	NA	NA	NA	125168488	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145122_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
12041	chr19	+	5843	5	NIC	ENSMUSG00000025019.18	novel	4833	8	NA	NA	73	790	intron_retention	FALSE	canonical	1	3	junction_4	41.0510353097215	47	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGATGAGTGACTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	41471148	41575765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41570216
12042	chr10	-	2003	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	-16	-3	8	2	multi-exon	FALSE	canonical	3	15	junction_8	666.978530389097	63	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725662	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855_93722964_93725399
12043	chr9	-	1914	11	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	27	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.5918870539741	647	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAGCTAACAAAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	13738376	13719091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719504_13720005_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
12044	chr15	-	2260	5	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	11037	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1324.57549803701	4	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCATTTGTTAGCCTGTTA	NA	False	NA	NA	False	NA	NA	NA	81259090	81247857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255697_81255776_81259022
12045	chr10	+	3168	1	NIC	ENSMUSG00000037171.7	novel	2095	3	NA	NA	304	-3895	mono-exon	FALSE	NA	NA	NA	NA	NA	7	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGTCCTCTGACTGCCC	NA	False	NA	NA	False	NA	NA	NA	61254054	61257222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_61254100_61257200
12046	chr10	+	1648	2	ISM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	4927	6	4927	-6	3prime_fragment	FALSE	canonical	3	289	junction_1	0	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCACCTCTGTCTCACAA	NA	False	NA	NA	False	NA	NA	NA	61258677	61261111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_61259477_61260262
12047	chr6	+	4195	30	NIC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	9	junction_24	77.5973785060468	1	107	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGAGGTTTGTTCTTAC	NA	False	NA	NA	False	NA	NA	NA	116185007	116239625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
12048	chr2	+	4006	9	NNC	ENSMUSG00000033943.16	novel	825	2	NA	NA	-24407	5237	intron_retention	FALSE	canonical	3	67	junction_1	25.2558780286887	17	58	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTAAGCCTGTTTGT	8245	False	NA	NA	False	NA	NA	NA	119703301	119762409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119703365_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119752324_119753908_119754568_119756859_119757203_119762191
12049	chr12	-	2422	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-10	-2334	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	436.005185290267	64	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299174	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290598_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
12050	chr11	-	1181	10	FSM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	-2	193	-2	-193	multi-exon	FALSE	canonical	3	39	junction_1	68.4675285747617	46	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCTGAGACATCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	98084104	98060929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_98061267_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
12051	chrX	-	3021	7	NIC	ENSMUSG00000031297.15	novel	2717	11	NA	NA	243	-5	intron_retention	FALSE	canonical	3	1326	junction_2	70.3169412177622	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTGTAAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	100127544	100122832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126253_100126396_100126575_100126753
12052	chr10	+	2288	9	NNC	ENSMUSG00000006498.17	novel	2598	13	NA	NA	0	-4	intron_retention	FALSE	canonical	0	0	junction_6	664.844424940903	21	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTACACTCCTGCCTGTCA	1624	False	NA	NA	False	NA	NA	NA	79690501	79700262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79698486_79698704_79698811_79698894_79699033
12053	chr4	+	2797	1	Genic_Genomic	ENSMUSG00000035637.15	novel	NA	NA	NA	NA	6777	339	mono-exon	FALSE	NA	NA	NA	NA	NA	3	81	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGCACTGCAGGACTTCC	6795	False	NA	NA	False	NA	NA	NA	44988276	44991073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_44988300_44991100
12054	chr8	+	2200	15	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	57	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	435.398175729494	9	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	75836308	75854316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851497_75854043
12057	chr2	+	754	1	Intergenic	novelGene_2582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGATTCGTAATGTGGAG	NA	False	NA	NA	False	NA	NA	NA	25169383	25170137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_25169400_25170100
12058	chr9	+	4221	14	Antisense	novelGene_ENSMUSG00000032127.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	73	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTGAACCGAAAGGCGAGT	4348	False	NA	NA	False	NA	NA	NA	44259393	44272962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44259817_44263961_44264069_44264209_44264399_44264499_44264646_44265128_44265295_44265398_44265591_44265707_44265853_44266260_44266448_44266995_44267148_44267591_44267725_44269363_44269614_44270434_44270597_44270903_44271049_44271138
12059	chr2	-	2037	10	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-8	-380	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	477.37611022891	12	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCATGTATGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	154916375	154901609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907337_154907404_154909242_154909319_154910747_154910939_154916284
12060	chrX	+	4231	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	183	3	45	-3	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	8	103	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATTTCTTGATGTCTATA	NA	False	NA	NA	False	NA	NA	NA	20230902	20267089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
12061	chr2	+	2968	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	185	1554	26	-1554	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	1	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTCTGAATATCTGTA	7258	False	NA	NA	False	NA	NA	NA	23046565	23087718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
12064	chr2	+	3232	19	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-16	-3	intron_retention	FALSE	canonical	0	0	junction_10	94.1308027411397	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTTGTTGTATGCTGT	1841	False	NA	NA	False	NA	NA	NA	130279539	130285651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130281446_130281539_130281635_130281760_130281838_130282150_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
12065	chr1	+	4161	18	Antisense	novelGene_ENSMUSG00000041303.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	9.41176470588235	1	46	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGGACGCCTAGGAGAGAC	NA	False	NA	NA	False	NA	NA	NA	54435169	54478130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_54435782_54436127_54437161_54438286_54438440_54442668_54442802_54444142_54444329_54444994_54445234_54455042_54455177_54455878_54455979_54456812_54457021_54458541_54458714_54459554_54459663_54463173_54463315_54466557_54466725_54467920_54468113_54469657_54469779_54473207_54473397_54476989_54477105_54477972
12066	chr6	+	3398	12	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	123	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGACTGGCAGCAATCGTGG	654	False	NA	NA	False	NA	NA	NA	122294833	122311088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298008_122298827_122299043_122299283_122299437_122299972_122300777_122302427_122302908_122309478_122309637_122310249_122310400_122311028
12067	chr15	-	2514	8	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-2476	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	898.416202808803	1	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTTGACCTTCCCCCAT	NA	False	NA	NA	False	NA	NA	NA	81272603	81247871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250637_81255697_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530
12071	chr16	+	3636	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	33	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	451.5704468985	1	104	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTGACTACTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	13598609	13632696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601193_13601355_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630956
12073	chr3	-	2826	5	NNC	ENSMUSG00000027828.13	novel	2957	5	NA	NA	36	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	266.687551265521	1	162	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTTTTTAAAAATGTGT	2822	False	NA	NA	False	NA	NA	NA	65299938	65287094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_65289452_65290414_65290545_65295152_65295252_65298745_65298873_65299825
12074	chr16	-	4632	18	Antisense	novelGene_ENSMUSG00000022797.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	139	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACGCCTTCTGAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	32451580	32427812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32427852_32431985_32432044_32433382_32433508_32434011_32434213_32435566_32435717_32435911_32436004_32437020_32437147_32437448_32437549_32437851_32437994_32439182_32439340_32439990_32440114_32441872_32441960_32442189_32442252_32443583_32443643_32443802_32443882_32445364_32445587_32447291_32447422_32448900
12076	chr15	-	5125	13	FSM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	-24	-3407	8	86	multi-exon	FALSE	canonical	2	23	junction_12	49.6258221314491	142	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATCCCTGGGCTAGAGC	NA	False	NA	NA	False	NA	NA	NA	77037978	76964592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
12077	chr12	-	5120	8	NNC	ENSMUSG00000020962.15	novel	6064	9	NA	NA	49	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	371.789824322006	278	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTTGTATTTTGCAGT	-3	True	NA	NA	False	NA	NA	NA	91556734	91522037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_91526067_91534557_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308
12078	chr9	+	5850	19	NNC	ENSMUSG00000033054.8	novel	6062	18	NA	NA	0	-41	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	32.2756740565161	176	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATAATGAGAATTCATATA	NA	False	NA	NA	False	NA	NA	NA	53448346	53485601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_53448489_53456467_53456587_53460209_53460271_53461337_53461411_53462897_53462939_53463549_53463775_53465184_53465273_53466356_53466442_53467687_53467780_53467867_53467956_53469424_53469522_53470381_53470508_53473341_53474284_53474454_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346_53482479_53483870
12079	chr6	-	2571	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43548	-286	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGCGTCCGGCGCACCG	NA	False	NA	NA	False	NA	NA	NA	71852242	71808354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71828863_71829711_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848541_71851298
12080	chr9	+	2583	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	192.749189362757	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824731	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77890876_77890985
12082	chr15	-	1459	6	NNC	ENSMUSG00000018042.19	novel	1982	9	NA	NA	9249	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	647.737415933339	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCCGACCCTGCCAGCG	7752	False	NA	NA	False	NA	NA	NA	83045129	83037704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038621_83038758_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021
12083	chr13	-	2525	5	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-12	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.408620039283	4	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6796	False	NA	NA	False	NA	NA	NA	62860579	62846832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848493_62848576_62849126_62853514_62853576_62853943_62854071_62860451
12084	chr14	-	3444	30	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	99.116609401327	49	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAAGGAAGCAGCTGTGA	9787	False	NA	NA	False	NA	NA	NA	55873099	55863177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865664_55866062_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
12085	chr13	+	4609	13	FSM	ENSMUSG00000021671.10	ENSMUST00000099295.6	5183	13	44	530	-22	21	multi-exon	FALSE	canonical	3	109	junction_9	14.0798812337163	124	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGATGTGTATGTCTG	NA	False	NA	NA	False	NA	NA	NA	96524845	96553715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_96525040_96526730_96526871_96528095_96528184_96529734_96529853_96530999_96531078_96533147_96533339_96535201_96535379_96537257_96537363_96538083_96538264_96539387_96539542_96540913_96541192_96547097_96547275_96550986
12086	chrX	+	4834	13	NNC	ENSMUSG00000037315.16	novel	2472	10	NA	NA	143	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	48.7056778574691	346	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	NA	False	NA	NA	NA	20292169	20386178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20292281_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
12087	chr2	-	2545	12	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCCGCTGCCGGAA	NA	False	NA	NA	False	NA	NA	NA	152122354	152068793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068910_152096127_152096240_152099295_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118950_152120884
12089	chrX	+	3319	15	NNC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	-8	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	91.4117451034447	25	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTTCCAGGGCTATGA	NA	False	NA	NA	False	NA	NA	NA	70258625	70358897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343339_70345339_70345433_70346106_70346221_70351305_70351483_70357251
12090	chr8	-	3030	17	NIC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	-2	2	intron_retention	FALSE	canonical	3	115	junction_13	28.4670862576415	207	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGTTTGCTGGTGAGAAG	NA	False	NA	NA	False	NA	NA	NA	84467804	84449988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
12092	chr5	+	2055	13	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	345	58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1131.41220445463	26	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGGAAGGTCAGAACT	NA	False	NA	NA	False	NA	NA	NA	129864406	129875270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873859_129874706
12093	chr9	+	3539	20	FSM	ENSMUSG00000025240.11	ENSMUST00000026270.9	3558	20	19	0	19	0	multi-exon	FALSE	canonical	3	209	junction_14	24.7475900502736	288	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGTTGGTACTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	123358842	123421665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415626_123415720_123416609_123416668_123419865
12094	chr11	-	3924	11	NNC	ENSMUSG00000020493.9	novel	3824	10	NA	NA	-206	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.3238075793812	254	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCCAGAGTTCATGTTG	NA	False	NA	NA	False	NA	NA	NA	86999740	86979978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86980620_86980725_86982692_86987788_86987886_86987960_86988021_86989488_86989605_86990200_86990300_86992207_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
12096	chr3	+	4236	18	NIC	ENSMUSG00000037643.15	novel	614	8	NA	NA	-31	-221	combination_of_known_junctions	FALSE	canonical	2	25	junction_1	242.818955155274	326	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGTGGACCATTTTCA	NA	False	NA	NA	False	NA	NA	NA	31059310	31106887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_31059399_31072698_31072821_31079278_31079369_31080401_31080453_31083634_31083721_31085232_31085374_31087326_31087379_31088647_31088707_31091994_31092172_31092598_31092697_31093177_31093265_31093516_31093653_31095590_31095679_31097839_31097966_31099030_31099111_31100621_31100712_31101120_31101237_31104338
12098	chr4	+	3132	16	NNC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	78.7695936823905	369	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603909	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99647402_99647466_99650107
12099	chr7	+	3991	2	FSM	ENSMUSG00000068566.14	ENSMUST00000164553.8	2798	2	-89	-1104	-89	-16	multi-exon	FALSE	canonical	3	952	junction_1	0	831	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAATGCTTG	2701	False	NA	NA	False	NA	NA	NA	3341529	3348942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3341816_3345237
12100	chr7	-	2546	15	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	303.491754250357	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102509	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095512_143102153
12102	chr2	-	2708	13	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCTCGGCCGCCAGCCGC	NA	False	NA	NA	False	NA	NA	NA	152122359	152068830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068908_152092317_152092531_152096128_152096236_152099293_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114646_152116007_152116105_152117321_152117465_152118862_152118953_152120888
12103	chrX	-	4772	8	FSM	ENSMUSG00000034457.11	ENSMUST00000037353.10	4752	8	-17	-3	-17	3	multi-exon	FALSE	canonical	3	19	junction_1	34.3130843134516	120	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGTTTATTCCTCGGC	NA	False	NA	NA	False	NA	NA	NA	96420839	96377442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_96381057_96382408_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
12104	chr6	-	3386	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-1	-115	intron_retention	FALSE	canonical	0	0	junction_2	3380.07576986079	1	137	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATTACAAAAATGCTGA	NA	False	NA	NA	False	NA	NA	NA	51446875	51438239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440474_51441068_51441192_51441431_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443647_51443885_51444033_51444164_51444272_51444370_51444407_51446650
12105	chr15	+	1434	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	270	431	270	-431	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATCAAAAGCTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	100513499	100518211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
12107	chr14	+	4013	8	NIC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-2	-1901	intron_retention	FALSE	canonical	3	458	junction_3	40.0871499590172	22	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGATGAAACATCTTTT	NA	False	NA	NA	False	NA	NA	NA	52517019	52531957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52517114_52517277_52517347_52523116_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
12108	chrX	-	553	1	NIC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	2806	5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTAAGTCTATAATGAATA	NA	False	NA	NA	False	NA	NA	NA	7534746	7534193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7534200_7534700
12109	chr6	-	2453	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	101	2	101	-2	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	2	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAACTCTGGATTTGAA	8586	False	NA	NA	False	NA	NA	NA	145021809	144944885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
12110	chr10	+	6739	47	NIC	ENSMUSG00000035722.16	novel	6696	47	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_12	11.8955758960178	146	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCACGGCTGAGTTTG	5991	False	NA	NA	False	NA	NA	NA	79832308	79851406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79832423_79833441_79833515_79833602_79833697_79833847_79833990_79834077_79834191_79834284_79834359_79834590_79834672_79835214_79835426_79835514_79835655_79836545_79836663_79836756_79836925_79837323_79837554_79837868_79838046_79838340_79838564_79838664_79838887_79838965_79839168_79839630_79839742_79840214_79840387_79840552_79840685_79840787_79840928_79841476_79841615_79841821_79842010_79842085_79842144_79842266_79842545_79842719_79842757_79842969_79843063_79843133_79843286_79843487_79843613_79843696_79843796_79843978_79844267_79844372_79844406_79844496_79844675_79844761_79844932_79845691_79845870_79845984_79846101_79846869_79847015_79847108_79847233_79847546_79847677_79847748_79847870_79847957_79848021_79849145_79849253_79849452_79849595_79849679_79849815_79850062_79850167_79850301_79850395_79850780_79851022_79851139
12111	chr2	-	4279	15	NNC	ENSMUSG00000027104.19	novel	4195	14	NA	NA	349	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	114.924487186596	1	113	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGTTTATAATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	73722525	73646865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722368
12112	chr5	-	2606	10	NIC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	341.17762652247	6	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAACTACCGTAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	32942990	32893653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32897967_32898134_32899553_32899820_32922116_32922293_32931739_32931811_32942892
12113	chr12	+	4938	12	NNC	ENSMUSG00000035933.6	novel	750	5	NA	NA	-62671	-39	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	24.0756383848147	3	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTGTGGTTATGATAAT	NA	False	NA	NA	False	NA	NA	NA	31881448	31979029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_31881734_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643
12114	chr5	+	4080	17	NNC	ENSMUSG00000028999.16	novel	3298	15	NA	NA	3	1170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	23.3565267912419	7	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGAGCTTAGCTGGAAG	NA	False	NA	NA	False	NA	NA	NA	23992721	24026537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385_24025681_24025890_24026118_24026282
12115	chr5	-	2878	8	NNC	ENSMUSG00000029103.17	novel	2981	8	NA	NA	-3	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	321.005880803147	12	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTCTGGGGAAAATGAC	NA	False	NA	NA	False	NA	NA	NA	35263043	35248849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_35250731_35252193_35252371_35253319_35253403_35254905_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
12116	chr4	-	4228	8	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	18	-12	intron_retention	FALSE	canonical	3	49	junction_5	52.6272995037863	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCGTCAGTGGCATATGT	1078	False	NA	NA	False	NA	NA	NA	129083445	129041809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129076326_129077393_129077511_129083334
12117	chr11	+	3494	5	Genic_Genomic	ENSMUSG00000096923.2	novel	1615	1	NA	NA	-94035	-1217	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCATTGTGGTGACGGC	NA	False	NA	NA	False	NA	NA	NA	6055993	6150426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_6058356_6063242_6063441_6100500_6100627_6143152_6143475_6149940
12118	chr7	-	2495	3	ISM	ENSMUSG00000025466.20	ENSMUST00000121115.2	872	4	90	-1076	4	-7	intron_retention	FALSE	canonical	3	471	junction_1	6	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGAACTTGTCTTG	1596	False	NA	NA	False	NA	NA	NA	139682229	139679393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139681102_139681244_139681316_139681513
12119	chr8	-	4151	13	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	8	-3	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_4	55.5984487193663	3	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCAAATAAAAATATAAAAA	NA	False	NA	NA	False	NA	NA	NA	47070227	47028656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47029757_47030320_47032202_47034472_47034520_47034602_47034686_47039641_47039732_47043249_47043339_47045627_47045791_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
12120	SIRV7	-	2192	7	NNC	SIRV7A	novel	2247	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1327.23693773527	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	114916	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2293_2346_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
12121	chr16	+	2666	18	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	876	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	733.621094322268	3	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTATCCCCAAGGTCTC	NA	False	NA	NA	False	NA	NA	NA	20471341	20482150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475722_20476617_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
12122	chr4	+	2079	8	NIC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-26	-2	combination_of_known_junctions	FALSE	canonical	3	43	junction_2	994.047980610142	36	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTGTCACTGCAG	-4	True	NA	NA	False	NA	NA	NA	40722532	40733898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40722634_40723702_40723845_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
12123	chr15	+	2721	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	22	0	-22	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATCCATATCTATT	NA	False	NA	NA	False	NA	NA	NA	81756684	81799312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
12124	chr6	+	3759	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	23	6	1	-6	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	267	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGATTTGCTGTCTTTGA	-15	True	NA	NA	False	NA	NA	NA	3498404	3603525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
12126	chr19	+	3718	23	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	4138	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	280.889452093739	1	106	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATAATTGGATGTCT	6055	False	NA	NA	False	NA	NA	NA	8879626	8894026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879885_8879995_8882298_8882427_8884586_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
12127	chr13	+	5057	13	NNC	ENSMUSG00000032727.15	novel	5279	13	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	46.5858675518183	125	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTGGGTCGTGTGACT	NA	False	NA	NA	False	NA	NA	NA	111822863	111855128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_111822889_111827757_111827916_111840162_111840298_111841755_111841877_111842535_111842622_111843171_111843248_111844747_111844900_111846259_111846342_111848219_111848315_111850774_111850903_111850978_111851122_111851217_111852005_111852059
12129	chr8	-	3477	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	-58	5	-58	-5	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	417	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGATGCTTAGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	127697879	127673926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
12130	chr3	+	3192	15	NIC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	8	0	intron_retention	FALSE	canonical	3	839	junction_3	66.9193849466106	27	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTGTTGTGAAGGTTT	NA	False	NA	NA	False	NA	NA	NA	69629372	69656375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69654169_69655630_69655702_69656104
12131	chr4	+	3044	18	Antisense	novelGene_ENSMUSG00000028678.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTAAATCCCGCGCGCCA	NA	False	NA	NA	False	NA	NA	NA	117016839	117039784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_117017580_117019206_117019311_117019408_117019516_117019799_117019868_117022338_117022452_117022556_117022757_117023505_117023654_117024079_117024580_117027029_117027195_117027281_117027337_117028913_117029012_117029483_117029583_117030798_117030918_117032081_117032205_117035116_117035167_117035341_117035444_117037768_117037868_117039630
12133	chr6	-	2665	15	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43544	-252	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGCGCACGCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	71852238	71808320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71828863_71829711_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849902_71851295_71852049_71852113
12134	chr2	-	3242	26	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	12	-1558	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	58.9044514446913	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATGGGTTATGTCTTGAA	NA	False	NA	NA	False	NA	NA	NA	62242191	62161974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175425_62178205_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
12135	chr15	-	3309	28	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_27	119.245881467301	3	27	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	76491711	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76485966_76491602
12136	chr19	-	2614	9	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-47	-6	intron_retention	TRUE	non_canonical	0	0	junction_3	366.827254133332	18	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAATGGAGTTTGTGATC	8390	False	NA	NA	False	NA	NA	NA	43512971	43488196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488997_43491346_43491490_43492960_43493684_43493866_43493869_43495133_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
12137	chr10	+	4842	22	NNC	ENSMUSG00000005682.10	novel	4445	26	NA	NA	-7	0	intron_retention	FALSE	canonical	0	0	junction_15	78.0295019502443	2	88	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	128139196	128157216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149613_128149710_128149911_128150051_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151360_128151531_128153439_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
12138	chr15	+	2285	14	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	543.769399436299	9	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81794641_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
12139	chr5	+	3412	9	FSM	ENSMUSG00000029486.14	ENSMUST00000036437.13	3431	9	26	-7	-3	7	multi-exon	FALSE	canonical	3	666	junction_1	44.6738178355063	2084	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTATTCTATTATATGTG	NA	False	NA	NA	False	NA	NA	NA	96357999	96414575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
12140	chr18	-	2289	15	NIC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	0	157	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	238.309651075902	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAACTTTTGACATTTC	-60	True	NA	NA	False	NA	NA	NA	10030141	9995436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
12141	chr18	-	2248	18	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGTGCTTCCGGGATCC	NA	False	NA	NA	False	NA	NA	NA	32994700	32970345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970624_32974085_32974195_32974947_32975066_32976812_32976948_32978643_32978696_32979879_32980014_32980192_32980370_32980640_32980763_32981348_32981414_32982124_32982210_32983436_32983589_32985033_32985153_32985542_32985701_32985913_32986025_32987831_32987912_32992271_32992380_32994078_32994175_32994551
12142	chr18	-	2758	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	17	-224	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	1564.51365745876	1	105	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGATCTCCTTTGTGAATG	216	False	NA	NA	False	NA	NA	NA	35087393	35070690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082191_35084322_35084459_35085448_35085537_35085729_35085789_35087222
12143	chr11	-	2407	11	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-26	-2	intron_retention	TRUE	non_canonical	0	0	junction_5	588.51780771698	1	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCACTGCTGCTTTATT	3753	False	NA	NA	False	NA	NA	NA	120463693	120451125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454229_120454491_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
12145	chr1	-	3070	4	NNC	ENSMUSG00000026112.8	novel	3863	3	NA	NA	-51	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	200.430093105357	3	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTTGTTCTGTTTCAAG	6324	False	NA	NA	False	NA	NA	NA	37469132	37456168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_37457609_37458345_37459709_37467422_37467507_37468949
12146	chr9	-	4850	7	NNC	ENSMUSG00000057367.13	novel	3130	7	NA	NA	70	-10	intron_retention	FALSE	canonical	2	5	junction_4	63.8785740465629	5	68	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTTTTAAAAAGTGTT	50	True	NA	NA	False	NA	NA	NA	7836988	7818246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821219_7825615_7825665_7826931_7827011_7833505
12147	chr13	+	2805	22	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	-13419	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	127.822527902775	1	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18994545	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014876_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
12149	chr2	+	2680	18	NNC	ENSMUSG00000027469.17	novel	3483	18	NA	NA	15	-636	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	269.217577075176	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGGTTTCAGTCACAG	2740	False	NA	NA	False	NA	NA	NA	152689929	152735938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711646_152711696_152715009_152715079_152717463_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
12150	chr3	+	2589	21	NIC	ENSMUSG00000028034.16	novel	2552	20	NA	NA	-2	-24	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	497.790967676192	74	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACAATAAATGATATGAAA	NA	False	NA	NA	False	NA	NA	NA	151916116	151938384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_151916338_151919613_151919705_151920461_151920525_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151937891
12151	chr8	-	4319	12	FSM	ENSMUSG00000031608.14	ENSMUST00000110316.3	3413	12	-31	-875	-2	3	multi-exon	FALSE	canonical	3	93	junction_6	28.2342620537355	156	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCAGTGCTTGTAATT	NA	False	NA	NA	False	NA	NA	NA	58106068	57976858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995868_57996052_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
12152	chr16	-	3275	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	21	-2060	4	-768	multi-exon	FALSE	canonical	3	117	junction_1	698.5	41	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATATACTTTTCTAGAATT	NA	False	NA	NA	False	NA	NA	NA	15412350	15371308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15374408_15398922_15399072_15412323
12153	chr1	+	2666	21	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	171	-5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	151.870429972395	8	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCATTTCTTGTGTGAAG	493	False	NA	NA	False	NA	NA	NA	72346756	72434106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72347020_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
12155	chr19	+	2979	19	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	65	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	215.917651197778	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCTCCAGGCTCAGCTA	3534	False	NA	NA	False	NA	NA	NA	8919303	8929658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919532_8919613_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
12156	chr5	-	2689	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	-13	-272	-13	0	multi-exon	TRUE	canonical	3	855	junction_8	345.39967790952	1770	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCATCCTCTTAAATC	NA	False	NA	NA	False	NA	NA	NA	122959370	122925521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
12157	chr11	-	3000	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9018	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	566.08901730223	1	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	406	False	NA	NA	False	NA	NA	NA	106615238	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573790_106575049_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106588142_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
12158	chr11	+	3191	18	NNC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	33	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	114.779342992782	8	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTTGGAAGCAGTTCT	NA	False	NA	NA	False	NA	NA	NA	119158886	119176266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119168548_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
12160	chr18	-	4345	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-32	71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	91.5735457744991	1	128	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAACACTTAGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	62681798	62637154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666739_62666971_62667136_62669186_62669316_62673951_62674118_62681682
12161	chr2	-	5156	9	NIC	ENSMUSG00000026860.17	novel	1851	13	NA	NA	5	-5	intron_retention	FALSE	canonical	3	34	junction_2	104.296452480418	29	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCGAATCAGGATCTCAGT	NA	False	NA	NA	False	NA	NA	NA	30249267	30234827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30235440_30235710_30235952_30236070_30236466_30236622_30236713_30237092_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
12163	chr5	+	3873	16	NIC	ENSMUSG00000029106.15	novel	4007	16	NA	NA	-26	3	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	159.558752676108	320	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTAAGGTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	34731180	34789641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34778175_34778263_34782622_34782780_34785758_34785858_34787813
12164	chr5	-	2793	16	NNC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	1722	111	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	357.523108810232	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGTAGAGTGATTTTGC	NA	False	NA	NA	False	NA	NA	NA	149555630	149540522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550791_149550996_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498
12165	chr17	-	932	2	FSM	ENSMUSG00000001525.11	ENSMUST00000156050.2	711	2	-15	-206	-15	-140	multi-exon	FALSE	canonical	3	10173	junction_1	0	4	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCAGTCTGGGGCAGGCAA	NA	False	NA	NA	False	NA	NA	NA	36149124	36146932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36147629_36148888
12166	chr14	+	3117	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	-16	6	-16	-6	multi-exon	TRUE	canonical	3	817	junction_12	125.603480743967	796	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTACGTTCCAAAGTGTA	NA	False	NA	NA	False	NA	NA	NA	122344433	122397010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
12168	chr16	+	3299	15	FSM	ENSMUSG00000022912.9	ENSMUST00000023629.9	3303	15	3	1	3	-1	multi-exon	FALSE	canonical	3	266	junction_5	24.011476847711	356	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAGCAATTTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	62674672	62749708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62744878_62745028_62746690_62746917_62748395
12169	chr5	+	5840	24	NNC	ENSMUSG00000046808.18	novel	6052	23	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	25.1562978093101	60	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCACTGGAAACTGTCAT	NA	False	NA	NA	False	NA	NA	NA	72360754	72456105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_72360907_72384974_72385302_72387619_72387815_72396440_72396646_72399378_72399465_72403046_72403154_72403434_72403567_72404159_72404288_72404395_72404649_72412253_72412490_72418266_72418456_72421345_72421956_72423313_72423418_72424749_72424877_72426614_72426800_72434421_72434729_72436727_72436805_72437386_72437513_72439447_72439649_72445485_72445567_72446660_72446766_72452984_72453173_72454270_72454965_72455080
12170	chr13	-	2881	13	NNC	ENSMUSG00000032745.19	novel	3694	13	NA	NA	176	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	330.294060901292	1	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGCTTCTGTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	111626386	111562696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603482_111624004_111624905_111626251
12171	chr9	+	621	2	FSM	ENSMUSG00000033543.18	ENSMUST00000135593.2	425	2	6	-202	-5	202	multi-exon	FALSE	canonical	3	907	junction_1	0	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTACTGACTGCTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	69919871	69923122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_69919944_69922573
12172	chr1	-	5909	23	NNC	ENSMUSG00000042772.16	novel	5767	22	NA	NA	8	-10	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_21	82.062715384018	265	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCCAAGCAGATCGGTGT	NA	False	NA	NA	False	NA	NA	NA	152778389	152712756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152753791_152753929_152778259
12173	chr8	+	3201	13	FSM	ENSMUSG00000001482.16	ENSMUST00000001522.10	3214	13	5	8	-5	0	multi-exon	FALSE	canonical	3	16	junction_1	97.6160278278567	495	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	NA	False	NA	NA	NA	124169729	124190001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124169791_124172836_124172924_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
12174	chr2	-	4795	6	FSM	ENSMUSG00000038914.16	ENSMUST00000130986.8	4898	6	283	-180	-75	165	multi-exon	FALSE	canonical	3	16	junction_5	68.2864554651945	10	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTCATCAAGTGACTTAA	NA	False	NA	NA	False	NA	NA	NA	180343860	180322685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180343753
12175	chr11	+	3091	16	NNC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	-8	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	121.812314648397	4	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGCAGTTCTCACGTC	NA	False	NA	NA	False	NA	NA	NA	119158843	119176272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119169676_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
12176	chr10	-	3591	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	-62	5	-62	-5	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	318	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCTGCTGAGTTCA	NA	False	NA	NA	False	NA	NA	NA	40759369	40707621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
12178	chr15	+	4258	17	NNC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	19	0	intron_retention	FALSE	non_canonical	0	0	junction_1	174.743014434769	383	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGGCTGTGTGAGTCTG	2262	False	NA	NA	False	NA	NA	NA	82031470	82089580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031571_82056963_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
12179	chr9	+	3433	16	NNC	ENSMUSG00000006932.18	novel	2222	14	NA	NA	34	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	218.789904296844	1117	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGTGTCATTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	120762917	120789571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_120763028_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786616_120786674_120786734_120786824_120786947_120787657_120787719_120788374
12180	chr8	+	2438	15	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	-18	-27	intron_retention	TRUE	canonical	0	0	junction_1	589.044214583841	3	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTGCTAAGGTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	75836233	75854289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836719_75836845_75836927_75837057_75839171_75839345_75840792_75840912_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
12182	chr18	+	2860	8	FSM	ENSMUSG00000060450.15	ENSMUST00000170811.8	2886	8	19	7	-16	-2	multi-exon	FALSE	canonical	3	128	junction_3	44.1310663864829	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTGAAGTAGACACGGT	945	False	NA	NA	False	NA	NA	NA	38429706	38450893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
12183	chr8	+	3407	12	NNC	ENSMUSG00000034518.15	novel	3989	12	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	36.1797623902033	11	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCCAGTCTTAGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	75720312	75758604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75720378_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616_75756751_75757220
12184	chr13	+	1911	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588127	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615307_3615583
12185	chr13	-	3951	13	NIC	ENSMUSG00000032621.9	novel	3934	12	NA	NA	84	-21	combination_of_known_splicesites	FALSE	canonical	3	14	junction_11	75.6025793210787	191	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGAGTATTTTAGCGGAA	10003	False	NA	NA	False	NA	NA	NA	103911030	103878140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103900803_103900928_103905824_103905959_103910806
12186	chr8	+	2954	15	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	-22	-1	intron_retention	FALSE	canonical	0	0	junction_7	440.894984951181	2	79	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGTGCTGTGTGAATAC	NA	False	NA	NA	False	NA	NA	NA	75836229	75854320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844309_75845884_75845997_75847407_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
12187	chr2	+	2922	20	Antisense	novelGene_ENSMUSG00000034032.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGACTGGCACTTCCGCCGC	508	False	NA	NA	False	NA	NA	NA	119600469	119617994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_119600566_119600806_119600911_119601370_119601573_119601676_119601835_119602218_119602373_119602963_119603142_119603619_119603753_119603869_119604053_119604270_119604439_119604597_119604701_119605433_119605533_119605776_119605893_119607146_119607381_119608601_119608815_119610529_119610656_119613124_119613219_119613564_119613713_119614214_119614451_119617700_119617779_119617895
12188	chr14	-	3001	3	FSM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	-6	-755	-6	755	multi-exon	FALSE	canonical	3	792	junction_1	24.5	1044	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCGTGTCACAGTGCAT	NA	False	NA	NA	False	NA	NA	NA	99283562	99271224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_99273947_99277950_99278097_99283429
12189	chr8	+	2481	17	NNC	ENSMUSG00000031864.17	novel	4201	17	NA	NA	10	146	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.089741445731	105	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTTAAAAAAAAACTTATT	NA	False	NA	NA	False	NA	NA	NA	69246596	69280299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246856_69247258_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
12190	chr10	-	3817	6	FSM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	575	-3	-63	3	multi-exon	FALSE	canonical	3	186	junction_4	20.6164982477626	1	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCCTGCTCTGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	34083136	34027385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687_34060157_34083075
12191	chr12	-	3482	22	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	155	-412	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.591631947503	1	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTTTCTTAGTTATTTT	2833	False	NA	NA	False	NA	NA	NA	59058648	59005580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006435_59006584_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048095_59048186_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
12192	chr11	-	3891	23	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	76	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGAACCCAATACGCAC	NA	False	NA	NA	False	NA	NA	NA	78213214	78192427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78192535_78192718_78192847_78194870_78195866_78195967_78196147_78203939_78204014_78204171_78204265_78204336_78204542_78204643_78204763_78204986_78205083_78205168_78205285_78205531_78205623_78205784_78206115_78206332_78206467_78206723_78206866_78210290_78210403_78210809_78210893_78211153_78211279_78211386_78211497_78211866_78211950_78212087_78212242_78212321_78212399_78212511_78212586_78212950
12193	chr5	-	2959	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	17	5	17	-5	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	302	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTCTGGGGAAAATGAC	NA	False	NA	NA	False	NA	NA	NA	35263093	35248849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
12196	chr3	+	2404	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	19	6	-11	-6	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	164	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAATTGTGTGCCTCTTG	NA	False	NA	NA	False	NA	NA	NA	122068055	122078914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
12198	chr5	+	3177	7	Intergenic	novelGene_779	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	41.464844547319	1	57	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGTTCGTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	104810291	104900353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104810344_104888834_104888902_104895041_104895169_104895405_104895467_104896979_104898005_104898256_104898564_104898815
12199	chr3	+	4394	24	NNC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-51	677	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	127.772201005213	1	130	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTTATATGACTGTTTC	NA	False	NA	-42	True	NA	NA	NA	63148906	63289721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63148988_63150636_63150716_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275999_63276300_63276378_63287653
12200	chr9	+	4529	16	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	4	-16	intron_retention	FALSE	canonical	3	165	junction_10	76.1533540517641	4	84	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAGAGTTTCCAAACGTA	NA	False	NA	NA	False	NA	NA	NA	99125498	99182441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99180636_99181780
12201	chr1	-	3721	7	NNC	ENSMUSG00000026235.15	novel	6315	18	NA	NA	66	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	71.1651053692905	9	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAAATCTGGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	77491650	77343825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_77346309_77349546_77349583_77403285_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
12202	chr15	-	3242	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	55	2	0	0	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	4	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	NA	False	NA	NA	NA	83033530	83010178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
12203	chr19	+	6540	24	FSM	ENSMUSG00000024754.14	ENSMUST00000025663.8	6602	24	14	48	4	-15	multi-exon	FALSE	canonical	3	56	junction_1	16.2129029807244	100	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCATGTATTTTATGTAT	NA	False	NA	NA	False	NA	NA	NA	21755735	21835676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_21756151_21770001_21770345_21774690_21774832_21775230_21775793_21779225_21779396_21784722_21784912_21786632_21786803_21789130_21789341_21789574_21789781_21789914_21789985_21792794_21792924_21795286_21795376_21801151_21801284_21802453_21802490_21803403_21803560_21807163_21807342_21809390_21809607_21812781_21812991_21819404_21819588_21821983_21822204_21825300_21825400_21829588_21829744_21833022_21833127_21833518
12205	chr19	-	4202	32	NNC	ENSMUSG00000035049.5	novel	4340	34	NA	NA	-26	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	71.864119092237	15	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGCCCTGATGAGTGGC	NA	False	NA	NA	False	NA	NA	NA	41884638	41851294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41851752_41853610_41853679_41857217_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
12206	chr11	-	3927	30	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	37	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	62.7359564987426	1	66	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAATCAGTACTTTTAA	NA	False	NA	NA	False	NA	NA	NA	60618012	60604975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607529_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
12207	chr10	+	4058	10	ISM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	35	12702	5	-2441	intron_retention	FALSE	canonical	3	222	junction_9	29.8477618740315	5	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAGTAAAGCCCAAA	1157	False	NA	NA	False	NA	NA	NA	7668689	7686197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034
12209	chr6	+	3032	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	22	428	11	-428	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGCTTCAGTGTACAGA	15	True	NA	NA	False	NA	NA	NA	28480368	28888403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
12210	chrX	-	3005	7	NNC	ENSMUSG00000036782.14	novel	3349	7	NA	NA	1877	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	462.952841370839	2	84	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23160520	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127682_23127813_23160453
12212	chr8	-	3072	19	NIC	ENSMUSG00000002885.15	novel	3000	20	NA	NA	0	-16	intron_retention	FALSE	canonical	3	18	junction_15	54.2168997843128	200	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATATTGATAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	84467812	84450008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
12213	chr3	+	3610	23	NNC	ENSMUSG00000028034.16	novel	4525	22	NA	NA	-2	4	intron_retention	FALSE	canonical	0	0	junction_3	562.685901328369	4	64	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTGTGTCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	151916107	151942467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151920461_151920525_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151939244_151939340_151940160_151940208_151941104
12215	chr10	+	2586	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	120	2317	-9	-779	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	86	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAAGTAGTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	111808688	111822020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
12217	chr9	-	3413	21	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6372	37230	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	86	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCCACGCGGTT	5029	False	NA	NA	False	NA	NA	NA	21316644	21279307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299403_21299446_21299818_21300050_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306733_21307308_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21314431_21314802_21315360_21315486_21315989
12218	chr11	-	3043	12	NIC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	67	-3	intron_retention	FALSE	canonical	3	2404	junction_3	150.87162733226	18	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5268	False	NA	NA	False	NA	NA	NA	88846224	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
12219	chr11	-	5238	23	FSM	ENSMUSG00000017631.20	ENSMUST00000072740.13	5394	23	156	0	156	0	multi-exon	FALSE	canonical	3	154	junction_22	28.8783427101686	149	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGGTGTGGTTGTTT	6275	False	NA	NA	False	NA	NA	NA	76462205	76307559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_76310020_76310560_76310709_76312978_76313085_76313873_76314009_76314859_76315000_76315739_76315850_76316092_76316153_76342678_76342811_76343156_76343255_76345341_76345417_76346434_76346540_76346986_76347063_76347425_76347549_76350006_76350173_76352118_76352241_76354353_76354495_76355063_76355117_76359541_76359603_76363314_76363423_76369820_76370007_76377263_76377363_76399713_76399899_76461856
12220	chr10	+	3417	7	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	-3564	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	302.008507974343	9	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCAGGGCCTTTATCTGT	NA	False	NA	NA	False	NA	NA	NA	80444492	80451615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448603_80448670_80449903_80450437
12222	chr10	+	2686	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	6	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	251.066072997489	1	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAGTTTGAATGTATTGC	NA	False	NA	NA	False	NA	NA	NA	21171922	21244772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228500_21230573_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
12223	chr1	-	6091	6	NIC	ENSMUSG00000026694.20	novel	4541	8	NA	NA	2	3	intron_retention	FALSE	canonical	3	82	junction_4	10.5565145763173	59	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGTTGGTTTATCTCAA	NA	False	NA	NA	False	NA	NA	NA	162376105	162361244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162374097_162375672
12224	chr2	+	4371	11	NIC	ENSMUSG00000027282.18	novel	2281	12	NA	NA	6	-1	intron_retention	FALSE	canonical	3	2343	junction_10	168.459164191207	18	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGATTGGTGTCTGCCT	220	False	NA	NA	False	NA	NA	NA	90677622	90695734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90677730_90679714_90679800_90679941_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
12225	chr5	+	4057	13	NNC	ENSMUSG00000014932.16	novel	1403	5	NA	NA	-4850	0	intron_retention	FALSE	canonical	0	0	junction_2	288.675808169341	2	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	32792024	32844401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_32792096_32792180_32792235_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
12228	chr17	+	3000	3	ISM	ENSMUSG00000046711.17	ENSMUST00000117600.9	1595	5	-26	-1	-5	1	intron_retention	FALSE	canonical	3	3635	junction_2	120.5	7	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775600	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_27775686_27778506_27778678_27779901
12229	chrX	+	3156	23	NIC	ENSMUSG00000031262.13	novel	3227	23	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	59.0381057782539	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTATTTCCGAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	133208970	133263386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_133209047_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
12230	chr3	-	3424	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	63	2	-42	-2	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	410	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACATGTGCCTGACCTT	7194	False	NA	NA	False	NA	NA	NA	121608888	121552557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
12231	chr5	+	1957	11	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1308.27658008542	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATATATTCTCGCTGTGTG	328	False	NA	NA	False	NA	NA	NA	77099195	77115349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114525_77114637
12232	chr10	+	2829	13	NNC	ENSMUSG00000015757.11	novel	3471	13	NA	NA	2	-572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	77.0250229903677	7	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTTACTTTTTTCTT	1141	False	NA	NA	False	NA	NA	NA	7668673	7698327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674294_7675339_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
12233	chr17	+	1249	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	48	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1666.82531778228	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3084	False	NA	NA	False	NA	NA	NA	35816962	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35820920_35820977_35821037_35821184
12234	chr17	+	4026	4	NIC	ENSMUSG00000023902.19	novel	1074	5	NA	NA	12	-4	intron_retention	FALSE	canonical	3	153	junction_1	60.5768566001535	22	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAAAATTAGTCCTGATT	897	False	NA	NA	False	NA	NA	NA	23819847	23829982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_23819934_23824478_23826619_23827081_23827140_23828240
12235	chr9	-	2191	9	NIC	ENSMUSG00000031922.13	novel	2262	10	NA	NA	7	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	85.214435396827	4	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTTAACAGCCAGCTAAC	NA	False	NA	NA	False	NA	NA	NA	13738396	13719100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_13720137_13721155_13721301_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
12236	chrX	+	3242	16	Antisense	novelGene_ENSMUSG00000016382.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGAAGGGAGGGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	74829272	74918182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_74830502_74834563_74834690_74834887_74835015_74837194_74837320_74837773_74837898_74838912_74838991_74839938_74840135_74842999_74843095_74844103_74844254_74845184_74845347_74846129_74846216_74848748_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74917943
12237	chr18	+	3328	12	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	34	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	237.785409195868	1	90	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTTCTTATGGCTACA	NA	False	NA	NA	False	NA	NA	NA	13105362	13126002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549_13124175_13124221
12238	chr6	-	4174	16	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	4	-17	intron_retention	FALSE	canonical	0	0	junction_8	220.914463084697	2	126	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATACATGATGTGAATA	7936	False	NA	NA	False	NA	NA	NA	124806367	124792017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794435_124794629_124794995_124795506_124795630_124796335_124796425_124796949_124797529_124798039_124798166_124798283_124798372_124798844_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
12239	chr11	+	4729	9	NIC	ENSMUSG00000007850.17	novel	4002	12	NA	NA	-34	-16	intron_retention	FALSE	canonical	3	44	junction_6	148.555334808279	2	170	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCTTTTAAAAGCTACAC	NA	False	NA	NA	False	NA	NA	NA	50269083	50277338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50269255_50270294_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274597_50275470_50275564_50275967_50276018_50276603
12240	chr4	-	3022	20	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	21	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	268.579169116115	1	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAATAAAATCCTGAGAGC	9	True	NA	NA	False	NA	NA	NA	41275095	41194335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41206909_41229816_41229849_41233603_41233715_41235516_41235595_41275039
12241	chr4	+	2271	7	Fusion	ENSMUSG00000082248.2_ENSMUSG00000065999.14	novel	628	4	NA	NA	-1	-5	multi-exon	FALSE	non_canonical	0	0	junction_2	43.2104025541176	1	78	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147527926	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147527997_147536170_147536264_147581613_147581681_147661528_147661587_147665698_147665826_147667290_147667360_147667863
12242	chr10	+	4362	26	NNC	ENSMUSG00000005682.10	novel	4445	26	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	105.763630800006	1	80	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGCTAGTGTGGGATTCT	NA	False	NA	NA	False	NA	NA	NA	128139215	128157220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144963_128145174_128146039_128146383_128146572_128146682_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150048_128150198_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154035_128154212_128154813_128154908_128156116_128156281_128156602
12243	chr6	+	3009	9	ISM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	171	7	39	-7	3prime_fragment	FALSE	canonical	3	639	junction_3	41.793951416443	387	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTAGTGTATGGAAGCG	NA	False	NA	NA	False	NA	NA	NA	113023356	113045227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
12245	chr17	-	744	1	NIC	ENSMUSG00000038045.15	novel	2060	7	NA	NA	9468	8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACATTGCTGTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	79193061	79192317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79192300_79193100
12246	chr10	-	3550	18	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	399	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	155.683313549163	2	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCGGAGTGGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	62175922	62104886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140569_62140643_62151164_62151328_62175791
12247	chr10	+	4329	7	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	3434	-3	intron_retention	FALSE	non_canonical	0	0	junction_5	302.008507974343	2	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCAGGGCCTTTATCTG	NA	False	NA	NA	False	NA	NA	NA	80442224	80451614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80449716_80449903_80450437
12249	chr16	-	3009	25	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	106.975651110688	558	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGCCTTTAACTGTTC	NA	False	NA	NA	False	NA	NA	NA	13486019	13355825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13403117_13403238_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
12250	chrX	+	4546	24	NNC	ENSMUSG00000025862.15	novel	5955	33	NA	NA	3	-72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	59.4766717306141	6	58	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAATTGTACTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	41238420	41365980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_41238563_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312187_41322747_41322856_41323522_41323630_41336851_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
12252	chr1	+	3598	28	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	11	-113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	222.667855643557	1	71	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTGGTTTTGCAAAATG	3078	False	NA	NA	False	NA	NA	NA	171910409	171949779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944849_171947443_171947606_171948796_171948992_171949266
12253	chr6	+	3569	6	Genic_Genomic	ENSMUSG00000108591.2	novel	1560	1	NA	NA	-6233	-1062	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	89	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGAACGGAGCGGCGGGC	NA	False	NA	NA	False	NA	NA	NA	72409800	72416531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_72411378_72411962_72412096_72412186_72412371_72412792_72413011_72413177_72414432_72416328
12254	chr12	+	2453	8	NIC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	68	junction_5	656.129311545665	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80992307	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995943_80996267_80996379_80996493
12255	chr15	-	2703	11	NIC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	13	-10	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	951.468281131852	19	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTCTAGCAATAAGGCT	NA	False	NA	NA	False	NA	NA	NA	10486020	10474874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485440_10485503_10485820
12257	chr4	+	2116	9	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	16	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	963.412286809235	4	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATACTGATTACAAAGTGT	38	False	NA	NA	False	NA	NA	NA	40722574	40733879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722594_40723742_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
12258	chr8	-	3449	19	NNC	ENSMUSG00000052488.8	novel	3713	18	NA	NA	3	6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	164.113179856065	12	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73228976	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73214542_73214824_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
12260	chr1	+	3187	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	7	1	combination_of_known_junctions	FALSE	canonical	3	175	junction_2	73.1663257550206	540	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9560	False	NA	NA	False	NA	NA	NA	175708153	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
12261	chr4	+	2768	23	NNC	ENSMUSG00000028330.9	novel	3010	23	NA	NA	135	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	83.1589263085653	3	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	-6	True	NA	NA	False	NA	NA	NA	46138747	46172403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152071_46153001_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
12263	chr3	-	572	2	ISM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	25523	16	14146	-16	3prime_fragment	FALSE	canonical	3	1070	junction_1	0	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTCTTAACTCCACATG	NA	False	NA	NA	False	NA	NA	NA	98221783	98220501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_98220774_98221483
12265	chr5	-	2782	17	NNC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	562.620011503101	4	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCTGAAGTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	122959297	122925793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937937_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
12266	chr11	+	3129	12	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	28	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	460.989664823822	344	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAATCAGTTTTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	109541774	109560483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255_109559285_109559487
12267	chr2	-	1476	10	Antisense	novelGene_ENSMUSG00000027323.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTCGGAAATCCCGCCA	NA	False	NA	NA	False	NA	NA	NA	118965908	118943322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_118943514_118946790_118946885_118949086_118949224_118951902_118952023_118954262_118954354_118957540_118957637_118961982_118962097_118964552_118964683_118964865_118964987_118965526
12268	chr5	-	2123	14	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10636	-8022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	48	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTGCGGGGTCTTCTC	3917	False	NA	NA	False	NA	NA	NA	129875149	129864466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868641_129868843_129869004_129869080_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129873808_129873917_129874425_129874494_129874585
12269	chr14	-	2989	12	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	208	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	138.460245808757	1566	31	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAACTTGTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	59607998	59584647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593476_59593600_59593765_59593900_59596924_59597033_59599182_59599305_59607902
12270	chr17	-	3555	2	ISM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	0	8	0	-3	intron_retention	FALSE	canonical	3	21077	junction_1	0	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTATGACCTCCGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	34174637	34170980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34171093_34171194
12271	chr8	-	3451	18	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-5	-183	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	432.520399742916	1	117	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438284	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415810_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427827_80428418_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
12274	chr9	+	4731	12	NNC	ENSMUSG00000034263.14	novel	2820	13	NA	NA	8	-71	intron_retention	FALSE	canonical	0	0	junction_6	70.938455458305	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGATTGCACTTAGAAACAA	NA	False	NA	NA	False	NA	NA	NA	64868194	64893919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64868221_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880097_64880499_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
12275	chr9	-	3531	18	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	76	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCCACGCGGTT	8583	False	NA	NA	False	NA	NA	NA	21313090	21279307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299092_21299403_21299446_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306237_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21311747
12276	chrX	+	2226	17	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	2	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	837.806359544823	9	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524661	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542292_20548738
12278	chr10	+	2737	10	NNC	ENSMUSG00000004207.15	novel	2564	14	NA	NA	9635	1	intron_retention	FALSE	canonical	0	0	junction_5	325.524230574865	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	239	False	NA	NA	False	NA	NA	NA	60129917	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135702_60135752_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
12279	chrX	+	2398	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-41	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1428.56769178083	3	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473299	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100480770_100480988_100483101_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
12281	chr11	-	1262	5	NNC	ENSMUSG00000017677.12	novel	1002	5	NA	NA	813	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	239.325484434901	2654	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTACATTGCCGATATTT	7127	False	NA	NA	False	NA	NA	NA	79132962	79130214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79130461_79130573_79131289_79131513_79131622_79132420_79132535_79132883
12282	chr10	+	3987	9	NIC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	2	-9	intron_retention	FALSE	canonical	3	1673	junction_5	35.3120022088808	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAAAGAAGAATGCTG	2291	False	NA	NA	False	NA	NA	NA	79795990	79806028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802561_79803153_79803223_79803304
12283	chr14	-	4457	29	NNC	ENSMUSG00000022021.15	novel	4582	28	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	54.1917772774597	4	37	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGTATGTCTCTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	87378579	86892798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87203932_87203979_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
12284	chr12	-	3958	7	NIC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	0	-26	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	109.640954432588	451	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAATTAAATTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	87490598	87472964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
12285	chr18	-	4293	19	NNC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	-14	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	71.3823818910832	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTAATATTTTCCTTCCT	-37	True	NA	NA	False	NA	NA	NA	6135984	6024447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6026731_6027574_6027678_6027959_6028103_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6058660_6058742_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6073210_6073287_6135803
12286	chr9	+	3182	3	NIC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	9080	-3	intron_retention	FALSE	canonical	3	405	junction_1	29	2	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20936360	20940110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20937896_20938373_20938977_20939066
12287	chr12	-	2618	2	ISM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	2827	22	2715	-14	intron_retention	FALSE	canonical	3	1349	junction_1	0	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTGTAGAACTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	105186169	105183030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_105183961_105184481
12288	chr3	-	1233	9	NNC	ENSMUSG00000027679.14	novel	2499	6	NA	NA	10847	6786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCGTTCCTATCGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	34123482	34103382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_34103471_34104221_34104302_34108369_34108479_34110476_34110564_34112170_34112230_34112314_34112380_34116053_34116180_34118266_34118467_34123063
12289	chr18	+	3669	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-8	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	437.873605184929	1	133	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAGTCTAAGAAGCAGA	NA	False	NA	NA	False	NA	NA	NA	35251957	35387822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356621_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
12290	chr6	-	4165	17	NIC	ENSMUSG00000029924.13	novel	2878	16	NA	NA	-5	3	combination_of_known_junctions	TRUE	canonical	3	43	junction_14	89.544681584112	284	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGCCCTTAAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	39354601	39311703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349012_39349072_39349780_39349862_39354552
12292	chr9	+	2749	8	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	25	intron_retention	FALSE	canonical	3	1479	junction_3	370.209372641802	9	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTATGCTTGGGTGGAAGC	1178	False	NA	NA	False	NA	NA	NA	108437667	108442618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525
12293	chr18	+	4143	12	NNC	ENSMUSG00000024576.15	novel	1222	11	NA	NA	16	256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	880.401467400897	3	148	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTAGAATGAGCCATGAA	444	False	NA	NA	False	NA	NA	NA	61688360	61723388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496_61722024_61722287
12294	chr11	-	4858	19	FSM	ENSMUSG00000018363.17	ENSMUST00000092517.9	3125	19	216	-1949	21	-10	multi-exon	TRUE	canonical	3	28	junction_17	7.74038631121946	141	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGTTTGTAAGAATACTG	NA	False	NA	NA	False	NA	NA	NA	106811080	106710901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360_106759495_106762327_106762437_106766726_106766766_106811006
12295	chr19	-	3169	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	698.683510253391	1	126	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTGGCTAACTACTTG	3899	False	NA	NA	False	NA	NA	NA	5345450	5323961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5324999_5325091_5325192_5329304_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
12296	chr7	+	4569	22	FSM	ENSMUSG00000002957.12	ENSMUST00000003038.12	4646	22	71	6	36	-6	multi-exon	FALSE	canonical	3	504	junction_7	69.5768877620837	291	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAACATGTGTGTGGTTT	9667	False	NA	NA	False	NA	NA	NA	141142156	141212918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145_141182276_141184821_141184924_141189719_141189829_141191248_141191397_141192541_141192711_141194111_141194250_141199363_141199547_141200384_141200483_141200704_141200937_141201027_141201202_141203530_141203695_141206020_141206104_141207806_141207897_141209102_141209227_141209971_141210089_141210197_141210268_141210349_141210485_141211204
12297	chrX	-	3593	8	NNC	ENSMUSG00000025742.6	novel	3699	7	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.8686092232108	434	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATAGTTCTTGTCATC	NA	False	NA	NA	False	NA	NA	NA	166165704	166129323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_166130211_166130269_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
12298	chr2	+	2400	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	23	1	23	-1	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8592	False	NA	NA	False	NA	NA	NA	72306525	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
12299	chr12	-	3311	15	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	74	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	172.283345162579	3	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATCAGTCAGCTATGCTG	2752	False	NA	NA	False	NA	NA	NA	59058729	59005172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039004_59053822_59054022_59058631
12300	chr14	+	2070	14	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	4	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	479.180130674401	13	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCAAAGGACTAACCATAA	NA	False	NA	NA	False	NA	NA	NA	45567296	45587148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578256_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
12302	chr1	-	2912	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	831.814204671782	3	73	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287420	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276678_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
12303	chr10	-	3325	21	NNC	ENSMUSG00000020124.11	novel	11525	22	NA	NA	-6	129	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	150.60985193539	6	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCCTGCGCGTTAGGCT	NA	False	NA	NA	False	NA	NA	NA	123032864	122949003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122964029_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
12304	chr6	-	2767	11	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-5	-24	intron_retention	FALSE	canonical	0	0	junction_1	305.477331401202	2	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9167	False	NA	NA	False	NA	NA	NA	88495815	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482125_88483803_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
12307	chr19	-	3517	31	NNC	ENSMUSG00000025159.9	novel	6607	31	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	52.2861889561245	478	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACACTCACGTGTACTGC	NA	False	NA	NA	False	NA	NA	NA	41969549	41932643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41933020_41933095_41933276_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
12308	chr15	-	1785	11	NIC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	18	-84	combination_of_known_junctions	FALSE	canonical	3	46	junction_10	1800.94970779309	63	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	132	False	NA	NA	False	NA	NA	NA	31601667	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601447
12309	chr7	+	2814	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203328.4	1898	3	147	-1063	147	-1	multi-exon	FALSE	canonical	2	16	junction_1	468	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGAAGACTCATGCTTTC	1052	False	NA	NA	False	NA	NA	NA	3337751	3347864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3337851_3341727_3341816_3345237
12310	chr4	+	3795	7	NIC	ENSMUSG00000054405.15	novel	1837	8	NA	NA	2	-6	intron_retention	FALSE	canonical	3	2684	junction_6	211.872341019041	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTTGATGGTCTCCTCC	2350	False	NA	NA	False	NA	NA	NA	132262879	132281047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132274020_132277687_132277780_132278845_132278922_132280327
12311	chr4	+	4154	10	NNC	ENSMUSG00000040455.18	novel	5861	17	NA	NA	12579	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	11.8457160042912	1	27	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTTAGTTCCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	21797302	21837868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21830416_21830504_21832163_21832318_21834234_21834536_21834794
12312	chr6	-	3004	22	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	47	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	151.880114435688	4	60	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCATCCTGTCCTGGCTGG	3540	False	NA	NA	False	NA	NA	NA	125168519	125144971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125156487_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
12313	chr18	-	5449	29	NNC	ENSMUSG00000024456.17	novel	5741	29	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	24.5274471412193	362	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCTCTAGCCTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	38068463	37976653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986760_37987530_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993576_38022750_38022866_38023529_38024017_38024109_38024223_38024845_38024869_38024953_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
12315	chr3	+	502	1	Intergenic	novelGene_3201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGGTCCTTCGTGATTT	NA	False	NA	NA	False	NA	NA	NA	153745780	153746282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_153745800_153746300
12316	chr18	-	2899	12	NNC	ENSMUSG00000037013.18	novel	3098	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	350.325845959312	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	14815823	14758685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14759841_14759885_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
12318	chr12	-	3582	19	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	36	-365	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	155.470423132941	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGTAAAATAAGAGTGCTT	2714	False	NA	NA	False	NA	NA	NA	59058767	59005533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048773_59052014_59052103_59053775_59054022_59058631
12319	chr11	-	2879	11	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	65	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	272.1683302664	7	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88755347	88721617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88735938_88755282
12320	chrX	-	1943	15	NIC	ENSMUSG00000036932.15	novel	2221	16	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_14	309.250616616283	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	47602289	47563820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47602112
12321	chr18	-	5624	27	NNC	ENSMUSG00000024456.17	novel	5741	29	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	21.3577930845813	351	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTCCCTCTAGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	38068463	37976656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986760_37987530_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993576_38022750_38022866_38023529_38024223_38024845_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
12322	chr2	-	2807	18	Fusion	ENSMUSG00000074825.5_ENSMUSG00000034906.16	novel	2695	18	NA	NA	-14	-6	multi-exon	FALSE	canonical	1	2	junction_17	111.535678652424	860	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTGTCTGAGTGCCCAG	NA	False	NA	NA	False	NA	NA	NA	126985376	126945752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126985134
12323	chr8	-	4634	29	FSM	ENSMUSG00000038102.16	ENSMUST00000125065.8	4646	29	11	1	8	-1	multi-exon	FALSE	canonical	3	87	junction_17	20.7100980988818	171	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCTGTCGTAAATACCT	4062	False	NA	NA	False	NA	NA	NA	47986494	47943164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
12324	chr8	+	337	3	NNC	ENSMUSG00000031762.8	novel	511	3	NA	NA	-74	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6879	29	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTCAGCTTGTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	94899413	94900188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94899504_94899754_94899821_94900007
12325	chr7	+	5047	14	Antisense	novelGene_ENSMUSG00000070426.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	601	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCCGGCCCCCACCCCGG	526	False	NA	NA	False	NA	NA	NA	101664291	101714339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_101665042_101665248_101665398_101665484_101665609_101665956_101666151_101666491_101666559_101666803_101669700_101672518_101672621_101673219_101673354_101678218_101678339_101680699_101680807_101684511_101684669_101688756_101688898_101691832_101691874_101714274
12326	chr9	-	3857	15	FSM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	134	1616	-2	-19	multi-exon	FALSE	canonical	3	110	junction_11	15.624418356521	407	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACCAGTCATATGCGCT	NA	False	NA	NA	False	NA	NA	NA	66500290	66423534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
12327	chr1	+	3357	13	NNC	ENSMUSG00000047369.18	novel	1999	2	NA	NA	1877	22748	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	126	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTTCCTACTTGGCAT	NA	False	NA	NA	False	NA	NA	NA	181642899	181666087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_181644582_181644827_181644953_181645053_181645131_181646404_181646573_181647427_181647553_181648236_181648342_181648999_181649192_181653186_181653241_181656274_181656472_181659109_181659298_181659712_181659768_181663609_181663854_181665942
12328	chr6	-	1643	1	Intergenic	novelGene_4262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGCCCCAAGCTTAGCGA	NA	False	NA	NA	False	NA	NA	NA	134325477	134323834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_134323800_134325500
12329	chr7	-	3481	6	NNC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.709015703938	21	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTTTGAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	118454907	118441439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118441604_118443195_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
12331	chr9	-	5108	23	ISM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	6860	-721	6860	721	3prime_fragment	FALSE	canonical	3	398	junction_4	56.9263697265857	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACAGATATCTGTAGATA	5215	False	NA	NA	False	NA	NA	NA	22293624	22242586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466
12332	chr16	+	3601	8	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-77	38	intron_retention	FALSE	canonical	1	14	junction_3	297.483664446041	3	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	38384473	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38384664_38393415_38393639_38396104_38396189_38399005_38399056_38402331_38402487_38405537_38405881_38406582_38408666_38411273
12333	chr7	-	2537	19	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-16	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	617.061427700319	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165392	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146146_126146663_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
12340	chr6	-	3071	18	NNC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_17	77.0552760746093	424	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	NA	False	NA	NA	NA	146479270	146451129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478723
12341	chr14	+	2080	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	43	1100	-7	-4	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	2	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271130	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
12342	chr14	+	4160	38	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	550	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	275.360283283436	1	100	17	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAACATGACTCACTCTGA	NA	False	NA	NA	False	NA	NA	NA	47887400	47974011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47887512_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932306_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47943219_47943262_47943869_47943956_47944698_47944741_47946258_47946339_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47967796_47967881_47970683_47970780_47973556
12343	chr14	-	2733	15	NNC	ENSMUSG00000021810.4	novel	3132	14	NA	NA	-14	-286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	138.101504373428	79	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGGTACTTGCTTGGC	NA	False	NA	NA	False	NA	NA	NA	20398152	20370205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20370634_20370709_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
12344	chr6	+	2567	1	NIC	ENSMUSG00000012396.13	novel	1995	5	NA	NA	4491	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	63	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTTAGTGGTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	122689017	122691584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_122689000_122691600
12345	chr13	-	1122	2	ISM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	37686	1340	-492	427	3prime_fragment	FALSE	canonical	3	31	junction_1	0	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAGGATACATACTGGA	NA	False	NA	NA	False	NA	NA	NA	62668757	62665948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_62666545_62668231
12346	chrX	-	3399	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	64	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	215.332269200809	5	43	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800254	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767564_149768813_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785166_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
12347	chr9	+	2797	8	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	-862	-3	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	150.5824067562	369	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20926418	20940110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20926483_20927079_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
12348	chr5	+	3701	4	Intergenic	novelGene_783	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	38	junction_1	30.554141381416	1	89	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGTTCGTTGAATTA	NA	False	NA	NA	False	NA	NA	NA	104870724	104900353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104870864_104895041_104895169_104895405_104895467_104896979
12349	chrX	-	2829	1	Antisense	novelGene_ENSMUSG00000025246.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGGTTTATCACAGCAT	987	False	NA	NA	False	NA	NA	NA	76706590	76703761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_76703800_76706600
12350	chr9	-	2803	20	NIC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-1	-16	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	407.171229303225	705	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATTATTTGATAATTGT	NA	False	NA	NA	False	NA	NA	NA	64080189	64044441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64078750_64078810_64080099
12351	chr15	-	1946	14	ISM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	7318	1359	-77	345	3prime_fragment	FALSE	canonical	3	2899	junction_10	232.446367167713	3	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	7246	False	NA	NA	False	NA	NA	NA	11392433	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317
12355	chr5	+	3567	9	NNC	ENSMUSG00000041264.17	novel	3604	9	NA	NA	0	-6	intron_retention	FALSE	canonical	1	1	junction_2	132.918913251651	1	64	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCCAGTTTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	149121476	149152232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149121617_149124517_149124616_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
12356	chr9	-	5591	4	Antisense	novelGene_ENSMUSG00000037257.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	105	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGCATTCAATGCTTGT	NA	False	NA	NA	False	NA	NA	NA	63549162	63526486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_63526513_63542585_63546425_63546872_63546923_63547486
12357	chr3	+	2557	6	ISM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	5104	386	24	-386	3prime_fragment	FALSE	canonical	3	920	junction_4	58.2326368971902	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGGGGGCTCTATCTT	883	False	NA	NA	False	NA	NA	NA	105871788	105876690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
12358	chr15	+	3842	16	Antisense	novelGene_ENSMUSG00000022464.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	158	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAGGGTTAGACCGGGAG	NA	False	NA	NA	False	NA	NA	NA	96892702	96953782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96894972_96896322_96896421_96897368_96897445_96903678_96903825_96906292_96906395_96906538_96906621_96906744_96907016_96907823_96907886_96907994_96908084_96908168_96908246_96910781_96910872_96911313_96911393_96914008_96914122_96914628_96914725_96917597_96917742_96953734
12359	chrX	-	2939	23	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	26	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGACTCACGTGTGTAA	NA	False	NA	NA	False	NA	NA	NA	143152686	143118910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129742_143130955_143131054_143132281_143132414_143133276_143133525_143134258_143134372_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147101_143147928_143147972_143150894_143150933_143152553
12360	chr9	+	3331	7	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-369	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	113.021630181523	40	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTTGTTCCACGTGTG	NA	False	NA	NA	False	NA	NA	NA	110789532	110813131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110789646_110789869_110790078_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
12361	chr11	-	3424	8	NIC	ENSMUSG00000001036.18	novel	4207	9	NA	NA	5	-15	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	109.403204818185	17	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTTGTATCATGATGTG	NA	False	NA	NA	False	NA	NA	NA	61470506	61408090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61470392
12362	chr13	-	2264	8	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-301	3	intron_retention	FALSE	non_canonical	0	0	junction_1	1603.97298821981	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTCACAATTCTCATTTG	NA	False	NA	NA	False	NA	NA	NA	100922412	100915251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100915750_100915919_100916294_100916529_100916641_100917283_100917425_100917665_100918292_100919975_100920156_100921964_100922127_100922240
12364	chr1	+	3986	31	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	-133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	213.29915351189	1	138	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTCAGGCTGAGAAGAAG	3073	False	NA	NA	False	NA	NA	NA	171910404	171949759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171944733_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
12365	chr16	+	2844	8	NNC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-39	-4	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	217.373561653947	904	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAAAAGGTGTTACATCT	NA	False	NA	NA	False	NA	NA	NA	17577442	17611224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17609956_17610175_17610289
12366	chr2	-	2915	11	FSM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	18	15	17	-15	multi-exon	FALSE	canonical	3	23	junction_6	111.30929880293	481	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGAGCCATAAGTCAT	NA	False	NA	NA	False	NA	NA	NA	132657957	132646141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
12367	chr11	-	3462	11	NIC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	0	-7	intron_retention	FALSE	canonical	3	15	junction_7	200.882154508558	15	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAATGTTAATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	59730578	59708627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59717257_59718671_59718852_59720972_59721134_59723709_59723760_59723857_59723971_59727716_59727847_59730495
12368	chr14	-	2686	7	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-111	intron_retention	FALSE	canonical	3	3066	junction_2	90.940762159893	6	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
12369	chr11	+	3011	19	FSM	ENSMUSG00000020363.7	ENSMUST00000020629.5	2947	19	-66	2	-57	-2	multi-exon	FALSE	canonical	2	320	junction_10	53.5808204583287	538	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCGACTTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	49684947	49729438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
12370	chr9	+	88	1	Intergenic	novelGene_1153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	571	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5750	False	NA	NA	False	NA	NA	NA	102905956	102906044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_102906000_102906000
12371	chr16	-	2861	10	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	372.919115448198	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACCATTGGCTCCTCATT	6292	False	NA	NA	False	NA	NA	NA	38370558	38345502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38349783_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
12372	chr6	+	4001	10	FSM	ENSMUSG00000030204.11	ENSMUST00000155277.8	4006	10	-1	6	-1	-6	multi-exon	FALSE	canonical	3	485	junction_5	26.0389072612125	16	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTACCTGTGTGTGTCTG	6593	False	NA	NA	False	NA	NA	NA	134988593	135000729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134998542_135000241
12373	chr3	-	2658	20	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	399	-250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	332.027499445169	16	20	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAGCCCTAAGTCTCCTC	8122	False	NA	NA	False	NA	NA	NA	89955207	89907849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928642_89946258_89946324_89951006_89951118_89952160_89952239_89955076
12375	chr3	-	2708	24	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	398	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	312.753108084088	108	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	8121	False	NA	NA	False	NA	NA	NA	89955208	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928607_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076
12377	chr6	+	2597	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	277.409124259139	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGCTGTTGTGTTTTTT	5428	False	NA	NA	False	NA	NA	NA	125108862	125121714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117759_125117843_125117998_125118122_125118236_125118466_125120963
12378	chr2	-	3500	28	NNC	ENSMUSG00000027546.16	novel	3729	28	NA	NA	91	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_27	58.804131878006	1	37	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	168576168	168476357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552782_168575963
12379	chr15	-	2955	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	972.418891219211	1	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACACAGTGAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	38300950	38294661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38295526_38295609_38296409_38296858_38297772_38297865_38298097_38300802
12380	chr7	+	3489	16	NNC	ENSMUSG00000030852.19	novel	2934	13	NA	NA	-23	-6	intron_retention	FALSE	canonical	0	0	junction_1	83.5734141671594	12	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAATGCATGTTTCA	NA	False	NA	NA	False	NA	NA	NA	130247635	130366448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130247812_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
12381	chr6	-	2975	14	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-8	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	423.649821902043	1	75	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9164	False	NA	NA	False	NA	NA	NA	88495818	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88480736_88480773_88481885_88481928_88482276_88483126_88483204_88483722_88483893_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
12383	chr17	+	3215	22	Antisense	novelGene_ENSMUSG00000077931.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	76	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGCCGTTTCCGCTTCCGG	NA	False	NA	NA	False	NA	NA	NA	36267740	36280644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36268482_36268570_36268646_36268735_36268796_36268961_36269137_36269219_36269250_36269960_36270032_36270120_36270193_36270324_36270613_36270759_36270881_36271000_36271085_36271465_36271620_36271704_36271844_36271928_36272122_36272592_36272716_36272877_36272979_36274019_36274284_36274459_36274570_36274644_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
12384	chr4	+	4220	17	Antisense	novelGene_ENSMUSG00000037622.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	313	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTTACTGGGGAATTT	7968	False	NA	NA	False	NA	NA	NA	133019776	133080800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133021699_133022510_133022705_133023729_133023905_133024730_133024966_133027870_133028046_133029029_133029139_133029693_133029765_133030859_133030976_133031459_133031557_133033134_133033320_133036060_133036248_133040617_133040730_133041070_133041117_133049481_133049566_133051137_133051284_133080094_133080261_133080600
12386	chr18	+	4788	10	NIC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	-21	-6	intron_retention	FALSE	canonical	3	768	junction_6	37.7038492320556	37	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTTCTTATGGCTAC	NA	False	NA	NA	False	NA	NA	NA	13105307	13126001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13122937_13123549
12387	chr17	+	4407	6	FSM	ENSMUSG00000054469.15	ENSMUST00000067545.8	4467	6	50	10	50	-10	multi-exon	FALSE	canonical	3	22	junction_1	24.2866218317822	157	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAAAAGCTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	73415038	73550353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_73415173_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
12388	chr9	+	4297	11	NNC	ENSMUSG00000057551.11	novel	2809	11	NA	NA	1432	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	88.3087764607799	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	NA	False	NA	NA	NA	19535526	19561027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_19535595_19536795_19536934_19537030_19537292_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
12389	chr10	-	2178	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	5	1	combination_of_known_splicesites	FALSE	canonical	3	222	junction_9	564.846492420728	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCTTCTGTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	127358265	127352990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356786_127356985_127358156
12391	chr4	-	2937	8	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	13	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	686.591046625371	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGTGTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	141325504	141303377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312198_141317254_141317437_141322534_141322791_141323205_141323260_141325424
12392	chr18	+	3099	10	ISM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	18	2949	18	-3	intron_retention	FALSE	canonical	3	765	junction_7	145.735681591328	147	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACTGCAATTCTGAGA	NA	False	NA	NA	False	NA	NA	NA	68433443	68454974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296
12393	chr1	-	2359	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	53	30	53	-2	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTGTGGGGTGTAGTAG	NA	False	NA	NA	False	NA	NA	NA	53391858	53383805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
12394	chr6	-	2386	12	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	285.651235073776	1738	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCTCACAGTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	95695784	95451126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95592790_95592944_95632438_95632581_95695669
12396	chr18	+	3333	12	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	237.785409195868	4	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13105351	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549_13123741_13123798
12397	chrX	+	5143	6	FSM	ENSMUSG00000043384.16	ENSMUST00000149595.8	837	6	-2	-4304	-2	4304	multi-exon	TRUE	canonical	3	40	junction_5	28.5629130167075	131	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCATGTTACTAGA	NA	False	NA	NA	False	NA	NA	NA	134643479	134667043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134649404_134649532_134652693_134652767_134662477
12398	chr6	-	2993	12	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-2	-24	intron_retention	FALSE	non_canonical	0	0	junction_8	287.528769670845	1	73	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9170	False	NA	NA	False	NA	NA	NA	88495812	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491364_88492342_88492405_88492485_88492552_88495352_88495421_88495667
12399	chr13	-	2122	9	Antisense	novelGene_ENSMUSG00000113894.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAGGCCGGCCGCCACCT	NA	False	NA	NA	False	NA	NA	NA	3615803	3588165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3588338_3598856_3598951_3600988_3601088_3604410_3604547_3606313_3606513_3606925_3607084_3611863_3612036_3614537_3614685_3614858
12400	chr9	+	4101	9	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-75	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_2	77.4721724233934	176	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	NA	False	NA	NA	NA	19533322	19561027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_19533582_19535527_19535595_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
12401	chr4	-	5711	38	NIC	ENSMUSG00000039298.17	novel	11847	37	NA	NA	-10	-6	combination_of_known_junctions	FALSE	canonical	3	51	junction_10	42.090739921554	111	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGATCAGCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	70328690	70141265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70165184_70165212_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710_70194946_70199326_70199760_70208081_70208267_70210068_70210165_70217056_70217186_70218802_70218913_70220320_70220452_70225431_70225527_70233560_70233702_70235663_70235835_70255577_70255797_70267380_70267483_70270905_70271026_70271846_70271889_70272949_70273113_70279047_70279203_70282243_70282368_70295029_70295107_70298427_70298539_70319481_70319550_70321710_70321779_70328448
12402	chrX	-	2910	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	377.559456055788	5	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227934	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086807_23094838_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
12403	chr3	-	3960	15	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	-8	intron_retention	FALSE	canonical	1	37	junction_8	160.761215370334	6	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGCCAAGGCTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	95662163	95647295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95657730_95658012_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
12404	chr9	+	3680	7	ISM	ENSMUSG00000032495.9	ENSMUST00000035076.9	3657	9	8948	7	-341	-7	3prime_fragment	FALSE	canonical	3	227	junction_2	34.6959011347962	99	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAAAAGCCTTGTTCCACG	NA	False	NA	NA	False	NA	NA	NA	110789560	110813127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
12405	chr3	+	2825	8	NNC	ENSMUSG00000027601.14	novel	764	2	NA	NA	11429	-39	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	377.342587805072	1399	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTAAGCTGTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	19253906	19274942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19253997_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
12407	chr11	-	2158	14	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	84	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	936.040433051742	36	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5285	False	NA	NA	False	NA	NA	NA	88846207	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88821674_88821823_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
12409	chrX	-	2962	24	Intergenic	novelGene_4066	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGAGCGGATGTGACGTC	NA	False	NA	NA	False	NA	NA	NA	143152666	143101012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101116_143102996_143103054_143105003_143105145_143119105_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132407_143133270_143133524_143134256_143134373_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138654_143139806_143139958_143146861_143147109_143152534
12411	chr15	+	2187	12	NIC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	3	185	intron_retention	FALSE	canonical	3	977	junction_4	61.6799256090707	2980	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTGTTTTATATTT	NA	False	NA	NA	False	NA	NA	NA	80832722	80853505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
12412	chr1	+	3383	27	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	318.87490823298	1	88	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCTCCTGCTTGCCGTTT	3066	False	NA	NA	False	NA	NA	NA	171910397	171949890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938346_171939422_171939595_171939690_171939729_171940627_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944545_171947476_171947606_171948796_171948992_171949266
12413	chr7	-	3485	28	NNC	ENSMUSG00000003435.10	novel	3755	29	NA	NA	270	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	209.515222019517	1	121	16	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAAAAGTGTGTGTACG	NA	False	NA	NA	False	NA	NA	NA	28037861	28014327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029085_28029998_28030071_28030794_28030955_28037772
12414	chr6	-	1984	5	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.89711431702997	127	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTCCCACAGAAAGAGCAA	7472	False	NA	NA	False	NA	NA	NA	122691592	122684596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688759_122689580_122689666_122690091_122690246_122690405
12415	chr18	+	3678	12	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26690	-9155	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	380.384103395111	16	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAATAATTGTGCCTATT	6395	False	NA	NA	False	NA	NA	NA	77126213	77225478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77225061_77225161
12416	chr5	+	1904	7	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-7	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1621.79567832148	35	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACAATATATTCTCGCT	749	False	NA	NA	False	NA	NA	NA	77099616	77115344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104694_77107161_77107341_77108956_77109137_77112300_77112470_77114093_77114253_77114494
12417	chr10	+	2451	13	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	59	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	450.983369981644	2	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATCTGGCCTTGTGTCTC	7049	False	NA	NA	False	NA	NA	NA	60113508	60138375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127559_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60134987_60135531_60135838_60135926_60136085_60136365_60136398_60136552_60136661_60137472
12418	chr8	+	3937	5	Antisense	novelGene_ENSMUSG00000037251.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1048	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCAGGACGCCTGCGCGG	NA	False	NA	NA	False	NA	NA	NA	26470285	26484139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_26473671_26476271_26476557_26477518_26477669_26479677_26479769_26484113
12419	chr4	-	2684	12	NIC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-81	-4	intron_retention	FALSE	canonical	3	24	junction_9	287.958473819799	7	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGGGCTTTGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	132080997	132059237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132079432_132079555_132079973_132080010_132080907
12421	chr11	-	2105	12	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-1025	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1218.85008807075	2	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	NA	False	NA	NA	False	NA	NA	NA	106677901	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675709_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734
12422	chr1	+	2986	29	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	300.546704238412	1	41	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3063	False	NA	NA	False	NA	NA	NA	171910394	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942696_171944497_171944534_171944774_171944864_171945581_171945660_171945819_171945889_171946407_171946440_171949750
12423	chr14	+	2706	5	ISM	ENSMUSG00000021748.10	ENSMUST00000224466.2	459	6	16	-943	-3	943	intron_retention	FALSE	canonical	3	2463	junction_1	124.760771078092	14	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGATCCTGATGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	14296807	14301003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597
12424	chr7	-	1664	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	81	0	-7	0	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	1389	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	79765059	79744593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
12425	chr11	+	2471	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3955	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55391172_55391399
12426	chr7	-	2462	22	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	514.499232572275	2	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143153810	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116757_143118755_143118803_143122051_143122121_143123153_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
12428	chr13	-	3911	5	NNC	ENSMUSG00000071281.13	novel	733	5	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.0837651064668	130	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTTGTTATTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	67872451	67853428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67854661_67854737_67857049_67858433_67858530_67858999_67859127_67872306
12429	chr5	+	3041	24	NNC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	-23	213	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	91.7131016031574	3	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGACCCTCATCTGGGTT	NA	False	NA	NA	False	NA	NA	NA	121536033	121578207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568773_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
12430	chrX	+	2089	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	912.790809125776	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357339	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139361130_139361233_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
12431	chr10	+	2836	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-5	2	intron_retention	FALSE	non_canonical	0	0	junction_1	460.523872004905	1	88	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1580	False	NA	NA	False	NA	NA	NA	79690457	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690550_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
12432	chr4	+	4392	17	NIC	ENSMUSG00000039953.14	novel	4459	18	NA	NA	111	-14	intron_retention	FALSE	canonical	3	455	junction_9	53.3315103855122	11	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCTAACTCCAGCCTGA	NA	False	NA	NA	False	NA	NA	NA	149671205	149733342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_149671230_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
12433	chr4	-	2616	7	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	518	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	571.330732199446	17	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323262	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317347_141323205
12434	chr16	+	4058	16	NNC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	0	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	181.062493815441	1	127	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTATTTCCTTACGAAGC	1088	False	NA	NA	False	NA	NA	NA	93629122	93672974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659608_93663228_93663427_93667251_93668141_93670124_93670283_93671646
12435	chr9	-	3818	21	NNC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	124.581659966465	2	89	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7640	False	NA	NA	False	NA	NA	NA	107749893	107650757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668323_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724533_107728113_107728204_107729323_107730874_107737547_107737659_107749847
12436	chrUn_JH584304v1	-	2507	8	Intergenic	novelGene_4607	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	124	junction_5	302.837398278215	347	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCAACAATCTTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	59716	52193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_56985_57152_57410_57500_58563_58836_59591
12437	chr4	+	2077	8	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-26	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	992.787972924568	16	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTGTCACTGCAG	-4	True	NA	NA	False	NA	NA	NA	40722532	40733898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40732139_40732177_40732727
12438	chr2	-	4731	14	NNC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	35	-2	intron_retention	FALSE	canonical	3	11	junction_6	169.590003333832	2	67	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATTTGCACTTAGTATG	NA	False	NA	NA	False	NA	NA	NA	48839208	48795329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48811725_48811816_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48826875_48827463_48827541_48830344_48830413_48839128
12439	chr11	+	2542	17	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	98	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	710.187142479889	2	33	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTTTTTGTATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	23206686	23246239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206718_23211834_23211881_23231303_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239754_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
12440	chr6	-	1622	10	ISM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	2391	0	-680	0	3prime_fragment	FALSE	canonical	3	6241	junction_6	638.611070030447	81	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51444361	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164
12442	chrX	-	2847	12	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-14	62329	intron_retention	FALSE	non_canonical	0	0	junction_1	713.483260936347	3	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTTCATCCCACTTGGT	NA	False	NA	NA	False	NA	NA	NA	72309010	72235816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72235852_72237769_72237911_72238603_72238673_72239544_72239581_72240956_72241992_72243351_72243451_72301237_72301341_72302698_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
12444	chr19	-	2718	11	Antisense	novelGene_ENSMUSG00000015176.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.3	5	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTCGTCATCAAGTCGCG	NA	False	NA	NA	False	NA	NA	NA	46072893	46064384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46064587_46067139_46067458_46067565_46067696_46068344_46068529_46069746_46069858_46069975_46070114_46070684_46070816_46070953_46071061_46071172_46071801_46071956_46072280_46072447
12446	chr11	+	2392	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3955	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	16	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55390641_55390947
12447	chrX	-	3092	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3378	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	1	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227914	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085802_23085910_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
12448	chr11	+	2438	15	NNC	ENSMUSG00000007850.17	novel	2427	15	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	159.439019754915	9	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50267829	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50267975_50268140_50268292_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
12449	chr11	-	412	1	Intergenic	novelGene_2269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATAGGTGTACTATAAG	7704	False	NA	NA	False	NA	NA	NA	51630270	51629858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_51629900_51630300
12451	chr2	-	3919	2	FSM	ENSMUSG00000026958.14	ENSMUST00000149953.2	466	2	-3455	2	2	-2	multi-exon	FALSE	canonical	3	339	junction_1	0	27	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTCTAGTAGGATCCA	9031	False	NA	NA	False	NA	NA	NA	25246341	25242303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25242579_25242697
12452	chr6	+	3727	8	Antisense	novelGene_ENSMUSG00000030168.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCACATGTGGGAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	119330120	119394465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_119332328_119332389_119332890_119334176_119334375_119336315_119336503_119338792_119338964_119342223_119342344_119347111_119347372_119394381
12453	chrX	-	4300	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-40	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	166.362567383804	1	135	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGATACTCTGGTGTTCG	NA	False	NA	NA	False	NA	NA	NA	59224489	59101321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168659_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
12454	chr11	+	5276	16	NNC	ENSMUSG00000059474.14	novel	5245	16	NA	NA	-36	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	38.6884995832095	111	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTATCAATTTTTCAACA	NA	False	NA	NA	False	NA	NA	NA	93776641	93837810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_93776889_93795988_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
12455	chr4	+	3837	12	ISM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	32	-1	-3	1	intron_retention	FALSE	canonical	3	99	junction_1	25.6792034067123	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGCAGCCTTGGTGGTC	NA	False	NA	NA	False	NA	NA	NA	115696426	115736448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777
12456	chr13	+	1856	9	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-9	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	661.250708884308	1	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588118	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598873_3606321_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
12457	chr6	+	3716	10	NIC	ENSMUSG00000033706.14	novel	2486	13	NA	NA	-6	-8	intron_retention	FALSE	canonical	3	423	junction_8	59.890228803811	7	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCCTTTGCAACAATGCC	NA	False	NA	NA	False	NA	NA	NA	85408964	85423409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
12458	chr17	-	2872	3	NIC	ENSMUSG00000024327.17	novel	2433	6	NA	NA	-8	1	intron_retention	FALSE	canonical	3	633	junction_2	15	1015	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34250664	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34248043_34248483_34248958_34249063
12460	chr11	+	3881	22	NIC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	-33	-3	intron_retention	FALSE	canonical	2	2	junction_11	44.1084007917785	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTCCAGTCCACTGAAT	2814	False	NA	NA	False	NA	NA	NA	78192416	78213280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205935_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
12461	chr2	+	2893	22	NNC	ENSMUSG00000027176.9	novel	2817	21	NA	NA	-4	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	78.9452004317034	379	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCTCCTCCTGTTTCTT	6896	False	NA	NA	False	NA	NA	NA	104420863	104495768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104421048_104439215_104439318_104439435_104439532_104468375_104468454_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
12462	chr15	-	1737	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	32	84	-32	-84	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	100	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601918	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
12463	chr19	-	1993	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1213.32978682534	18	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3780	False	NA	NA	False	NA	NA	NA	7017318	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003753_7006033_7006117_7006269_7006356_7006513_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
12464	chr15	+	3392	19	NNC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	-13	-9	intron_retention	FALSE	canonical	0	0	junction_3	276.784089316502	42	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAGGGAGGCTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	89239952	89257020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247778_89247893_89247968_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
12465	chr9	-	3574	15	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	11	-180	intron_retention	FALSE	non_canonical	0	0	junction_6	61.7002298808273	3	50	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGGACTGAAAAAGACTTT	6389	False	NA	NA	False	NA	NA	NA	44272956	44259404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265327_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
12466	chr5	+	6369	10	ISM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	43210	5	-3000	-5	3prime_fragment	FALSE	canonical	3	78	junction_3	12.7366487830285	27	73	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGTCCAGTGTGAAGAAA	8373	False	NA	NA	False	NA	NA	NA	65964073	65987446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
12467	chr13	-	2785	12	NNC	ENSMUSG00000021711.18	novel	1689	13	NA	NA	3	418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	239.911863982044	535	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCTTTAAAAAAATTACAAC	NA	False	NA	NA	False	NA	NA	NA	104314964	104279406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286698_104290799_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
12468	chr3	+	2336	8	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	-11	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	459.239655544346	158	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTGTGTGCCTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	122068055	122078916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122068128_122068846_122069621_122069690_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
12470	chr6	+	3628	7	NNC	ENSMUSG00000043131.15	novel	2292	7	NA	NA	9	-79	intron_retention	FALSE	non_canonical	0	0	junction_6	116.72569935061	30	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTTGAAGTGTGTTAAC	NA	False	NA	NA	False	NA	NA	NA	83303026	83320678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157_83318524_83319198
12471	chr8	+	4810	14	Antisense	novelGene_ENSMUSG00000031523.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	111	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCCAAACGCTGAAGTGC	NA	False	NA	NA	False	NA	NA	NA	37036140	37081038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_37037560_37038420_37038592_37039820_37040034_37041102_37041336_37042017_37042075_37044187_37044403_37046377_37046573_37046697_37046859_37049857_37050031_37050693_37052122_37053829_37053901_37060536_37060615_37066524_37066595_37080712
12472	chr5	+	1965	9	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	130	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1383.95022828677	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATTCTCGCTGTGTGGT	491	False	NA	NA	False	NA	NA	NA	77099358	77115351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112401_77114477
12475	chr4	+	6992	50	NNC	ENSMUSG00000028991.16	novel	8564	58	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	26.3345819044395	87	15	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATATATGTGTATGAC	NA	False	NA	NA	False	NA	NA	NA	148533067	148642134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148533145_148536713_148536869_148548925_148549005_148549403_148549620_148550347_148550554_148552706_148552830_148553444_148553535_148553823_148553917_148554678_148554814_148555028_148555159_148556370_148556622_148565321_148565409_148568011_148568180_148568766_148568880_148569082_148569246_148570505_148570599_148571232_148571380_148573932_148574076_148575791_148575955_148576077_148576224_148596227_148596304_148599282_148599423_148605748_148605850_148608915_148609032_148610180_148610259_148610454_148610563_148614938_148615065_148615134_148615267_148618318_148618435_148619364_148619483_148620967_148621217_148621818_148621920_148622319_148622417_148622732_148622832_148622919_148623043_148623184_148623368_148624437_148624573_148624741_148624917_148628875_148629012_148629966_148630115_148630854_148630978_148632060_148632144_148633824_148633898_148634247_148634323_148634544_148634681_148635415_148635482_148637168_148637250_148637487_148637569_148640723_148640830_148641301
12476	chr10	+	4461	1	NIC	ENSMUSG00000001436.16	novel	2309	6	NA	NA	3175	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCTTTTCTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	76881799	76886260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_76881800_76886300
12477	chr9	+	3520	21	FSM	ENSMUSG00000033335.18	ENSMUST00000072362.14	3502	21	-13	-5	0	5	multi-exon	FALSE	canonical	2	327	junction_20	112.703715555433	448	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGGCCTTTTGTGTGTG	5866	False	NA	NA	False	NA	NA	NA	21336227	21418441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
12478	chr1	+	3430	27	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	228.936391388034	10	60	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCCTGCTTGCCGTT	3055	False	NA	NA	False	NA	NA	NA	171910386	171949889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933728_171940700_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
12480	chr2	-	2808	18	NIC	ENSMUSG00000027620.17	novel	2127	18	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	117	junction_15	816.691426312992	1579	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	156022102	155989158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156019306_156021096_156021161_156021806
12481	chr3	+	3290	16	FSM	ENSMUSG00000027722.15	ENSMUST00000108112.10	3295	16	0	5	0	1	multi-exon	FALSE	canonical	3	324	junction_1	47.7393850912314	654	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGCTAGTTTTATCTTG	NA	False	NA	NA	False	NA	NA	NA	37474044	37633240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
12482	chr6	+	2208	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	-19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	465.928478351319	21	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2924	False	NA	NA	False	NA	NA	NA	122285938	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289299_122289343_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
12484	chr5	-	3649	19	FSM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	21	-340	21	340	multi-exon	FALSE	canonical	3	157	junction_7	26.3739138796905	408	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAACCAATCTGGCCT	970	False	NA	NA	False	NA	NA	NA	36987976	36963924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
12485	chr1	-	1278	10	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	1842	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2346.35461940432	2	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGACTTAATACTT	NA	False	NA	-156	True	NA	NA	NA	86284849	86278219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278262_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
12486	chr4	-	2365	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	230.688187820703	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726969	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697615_147697866_147698506_147699736_147699864_147702873_147702962_147725321_147725463_147726820
12487	chr19	-	2058	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	63	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1113.79418402818	1	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902360	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892323_15894409_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
12488	chr7	-	1778	5	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	11	8680	11	2780	5prime_fragment	FALSE	canonical	3	643	junction_1	32.2441855223543	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGGTACCCAGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	64042005	64034954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
12489	chr7	-	1600	6	ISM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	7166	64	-583	-64	3prime_fragment	FALSE	canonical	3	635	junction_4	78.2161108723772	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCCCTCTCTTAGTTTG	NA	False	NA	NA	False	NA	NA	NA	64034850	64026338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049
12490	chr6	-	2424	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	128	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1217.36272737422	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTGGATTTGAATCTT	8613	False	NA	NA	False	NA	NA	NA	145021782	144944881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946023_144950074_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
12491	chr19	-	3269	9	NNC	ENSMUSG00000024764.11	novel	3231	8	NA	NA	20	-7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	204.903902781279	326	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCAGATGCTGGGATGG	NA	False	NA	NA	False	NA	NA	NA	7218528	7203044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211175_7211241_7211468_7211522_7212427_7212524_7218302
12492	chr10	+	4390	14	Antisense	novelGene_ENSMUSG00000020076.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGCTGGGCGGCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	62451820	62486965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62452298_62455365_62455408_62457166_62457302_62460545_62460709_62460925_62460997_62461940_62462061_62463298_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62478736_62479077_62479154_62482694_62482983_62486804
12493	chr7	-	4164	13	FSM	ENSMUSG00000025512.16	ENSMUST00000153191.8	4182	13	-12	30	4	-28	multi-exon	FALSE	canonical	3	145	junction_12	22.800310670398	660	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGGGTGCCATTTGGC	NA	False	NA	NA	False	NA	NA	NA	141119741	141073078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
12498	chrX	-	2889	4	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-19	intron_retention	FALSE	canonical	3	14744	junction_3	1041.10550217865	2	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGCATGGTGAAACTACT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101229267_101230001_101231059_101231427
12499	chr7	+	2979	6	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	8	156705	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	92.2019522569886	2	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTGAGCAGAAATGGCT	NA	False	NA	NA	False	NA	NA	NA	42827019	42998238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42906867_42906982_42909886_42910237_42910431_42910493_42912710_42915039_42998220
12500	chr4	-	3752	13	NNC	ENSMUSG00000037443.14	novel	3893	14	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	115.606973069198	61	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	133914346	133857168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894759_133914255
12501	chr5	-	2946	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	26	0	1	0	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	527	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	NA	NA	NA	5609512	5587453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
12502	chr6	-	2293	7	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	-1974	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	305.982252571761	2	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAACTGTGTCTATTACT	NA	False	NA	NA	False	NA	NA	NA	72414033	72409784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72409841_72410575_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977
12503	chr6	+	5794	12	NIC	ENSMUSG00000071337.12	novel	3130	12	NA	NA	1	-2	intron_retention	FALSE	canonical	3	32	junction_5	54.2339590482715	81	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTTAAAGTTCTTTT	9786	False	NA	NA	False	NA	NA	NA	86381305	86410385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
12504	chr6	-	2794	3	FSM	ENSMUSG00000000441.18	ENSMUST00000203276.2	838	3	-1313	-643	194	-1	multi-exon	FALSE	canonical	3	735	junction_2	39	17	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTAATGGCTACTGACT	NA	False	NA	NA	False	NA	NA	NA	115598592	115595558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115596371_115596519_115596655_115596745
12506	chr6	-	2729	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	74	1	56	0	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTGTCTATTACTTG	NA	False	NA	NA	False	NA	NA	NA	72416467	72409782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
12507	chrX	+	2115	13	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	45	-727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	230.243877346512	24	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTAATCTAAATT	NA	False	NA	NA	False	NA	NA	NA	150799468	150844963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819143_150844863
12509	chr5	+	1623	7	ISM	ENSMUSG00000005907.15	ENSMUST00000006061.13	4433	23	33583	142	2445	127	3prime_fragment	FALSE	canonical	3	71	junction_4	8.84433277428107	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTACGTCAATGGTGGA	NA	False	NA	NA	False	NA	NA	NA	3679648	3687088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
12510	chr6	-	1527	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	77	571	1	-104	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGAAGGGGAGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	87828011	87820167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
12512	chr4	-	3452	9	FSM	ENSMUSG00000028403.16	ENSMUST00000030110.15	8763	9	135	5176	16	133	multi-exon	FALSE	canonical	3	62	junction_1	13.8293166859393	17	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCATTATAAAAACTTACTT	NA	False	NA	NA	False	NA	NA	NA	82777775	82722150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_82724699_82725249_82725294_82738566_82738684_82753682_82753822_82756512_82756625_82762340_82762440_82765779_82765977_82772205_82772353_82777726
12513	chr17	+	1602	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	76	3	-3	1	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	139	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775623	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
12514	chr8	-	3402	10	NIC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	3	-10	intron_retention	FALSE	canonical	3	23	junction_2	193.67122452723	10	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCCTGCTTTCTCTAGT	NA	False	NA	NA	False	NA	NA	NA	110419889	110397970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110399274_110402007_110402057_110402274_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
12516	chr15	-	2642	10	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	516.270816099027	9	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTATGATCTTCTTTCGT	NA	False	NA	NA	False	NA	NA	NA	96953830	96892700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894517_96907832_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
12517	chr4	-	3450	19	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	223	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	121.943014418343	3	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTACCTGACTTGTCTTT	22	True	NA	NA	False	NA	NA	NA	41124232	41114432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118416_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120121_41122123_41122304_41123258_41123376_41123458_41123660_41124158
12518	chrX	-	3434	6	Antisense	novelGene_ENSMUSG00000000134.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	75	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGCAAGACCCGTGATGA	NA	False	NA	NA	False	NA	NA	NA	7641437	7632910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_7633094_7633675_7633922_7635666_7635786_7637011_7637070_7637233_7637310_7638685
12520	chr15	-	3031	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	-6	19	-6	-16	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	1	108	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTTTTCTTTGGTATAC	NA	False	NA	NA	False	NA	NA	NA	38300956	38294675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
12521	chr11	+	2723	15	NNC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	3	1107	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	231.393736355351	2	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTGTGTGAGATACTGT	NA	False	NA	NA	False	NA	NA	NA	4110357	4130526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128192_4129391_4129426_4130033
12522	chr3	+	3112	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-28	2	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	5	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAATATTGAAGTTAT	NA	False	NA	NA	False	NA	NA	NA	63202953	63288519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
12523	chr10	+	2358	11	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	0	-2	intron_retention	TRUE	non_canonical	0	0	junction_7	633.141848245715	32	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1589	False	NA	NA	False	NA	NA	NA	79690466	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695653_79696713_79696792_79698620_79698704_79698811_79698890_79698978
12524	chr4	+	3019	14	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-24	-2	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_6	74.2670696415046	170	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603876	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
12525	chr12	-	2233	23	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	32	-2324	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	610.373603582603	2	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTGTCTTCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	13299132	13269297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13275392_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13296026_13296079_13299104
12526	chr9	-	2365	16	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	459.792629586667	11	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGACCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	36678911	36643721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663673_36670557_36670621_36674632_36674694_36676349_36676477_36678845
12528	chr11	+	2512	22	ISM	ENSMUSG00000059439.16	ENSMUST00000092821.10	2769	24	-57	241353	-12	-19047	5prime_fragment	FALSE	canonical	3	82	junction_16	16.0315731563836	235	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	3466	False	NA	NA	False	NA	NA	NA	85243980	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
12529	chr4	-	3392	15	NNC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	9	53	at_least_one_novel_splicesite	FALSE	canonical	3	139	junction_14	171.623282279556	114	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTCACACTGTTTGCC	-20	True	NA	NA	False	NA	NA	NA	48473450	48430804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473019
12531	chr13	-	3163	13	NIC	ENSMUSG00000034617.8	novel	2728	14	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	56	junction_11	116.868753546684	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGAGGCTTTGTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	68730232	68708892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68728669_68728835_68730183
12532	chr16	-	2081	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	2	10	2	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	45975438	45973357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
12533	chrX	-	2101	15	Intergenic	novelGene_4087	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	22	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCAGCTCCCGGAGTTTC	NA	False	NA	NA	False	NA	NA	NA	150844961	150817012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150817154_150819095_150819245_150819336_150819473_150820363_150820487_150820589_150820693_150824321_150824459_150829646_150829802_150829890_150830045_150830853_150830963_150841772_150841931_150842352_150842514_150842621_150842774_150843969_150844040_150844286_150844398_150844719
12534	chr10	-	2468	10	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	329.940436076006	779	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5257	False	NA	NA	False	NA	NA	NA	62322525	62291050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292047_62292121_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
12535	chr2	+	2312	9	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	-3	-75	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	872.90502776648	8	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGTCTAATTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	34662103	34666468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665709
12536	chr11	-	1844	5	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACTTCCGCCTGCGCACG	NA	False	NA	NA	False	NA	NA	NA	75656662	75623741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75646398_75646507_75647642_75647847_75650114_75650253_75655443
12537	chr5	+	3257	18	FSM	ENSMUSG00000014668.16	ENSMUST00000112519.9	3159	18	-97	-1	-90	0	multi-exon	FALSE	canonical	3	248	junction_2	36.3883322871989	503	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTGTACTCCTGTGC	NA	False	NA	NA	False	NA	NA	NA	110283617	110319838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
12538	chr11	-	3275	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	0	0	intron_retention	FALSE	canonical	3	102	junction_1	54.1331907774703	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3617	False	NA	NA	False	NA	NA	NA	54846913	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
12539	chr2	-	2051	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-28	-245	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5353.27857485485	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGCCAAGTAACTTGGCT	3708	False	NA	NA	False	NA	NA	NA	154734779	154713582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719742_154726230_154726367_154729623_154729728_154730102_154730281_154734609
12541	chr3	-	1866	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30609	-2421	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCCCGAACGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	121251832	121220305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_121220476_121243595_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
12543	chr4	+	4861	9	NIC	ENSMUSG00000028248.16	novel	2438	10	NA	NA	0	-8	intron_retention	FALSE	canonical	3	402	junction_3	32.8785644455472	1	120	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTAAACTCTTGCACCTT	-11	True	NA	NA	False	NA	NA	NA	21848047	21875248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21871609_21873585
12544	chrX	+	1042	5	ISM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	25	3212	7	-3212	5prime_fragment	FALSE	canonical	3	1825	junction_3	58.6403231573633	33	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGACCACATAGCAGTT	NA	False	NA	NA	False	NA	NA	NA	74557929	74575336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690
12545	chr11	+	4665	16	FSM	ENSMUSG00000020823.17	ENSMUST00000090433.6	4654	16	-14	3	-14	0	multi-exon	TRUE	canonical	3	319	junction_5	24.9420662068455	306	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGTGTCCTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	117006049	117050091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
12546	chr2	+	4378	7	NIC	ENSMUSG00000000826.17	novel	3728	6	NA	NA	13	635	intron_retention	FALSE	canonical	3	55	junction_1	77.7924589318699	256	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTGGTTTCTTGAAGT	7084	False	NA	NA	False	NA	NA	NA	181162356	181194677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
12547	chr10	+	2656	15	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	6	intron_retention	FALSE	non_canonical	0	0	junction_14	446.012812115783	1	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTGAGCCCTTCATTCT	1585	False	NA	NA	False	NA	NA	NA	79690462	79700199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699857_79700041
12548	chr17	-	2551	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	4	-1665	4	1406	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	1844	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	3824	False	NA	NA	False	NA	NA	NA	25493280	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
12549	chr5	-	2115	14	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	595.175654048112	5	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2294	False	NA	-115	True	NA	NA	NA	138170106	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167193_138167664_138167736_138167821_138167987_138168578_138168659_138169987
12550	chr16	-	5175	28	FSM	ENSMUSG00000039637.16	ENSMUST00000038552.13	4296	28	70	-949	6	949	multi-exon	FALSE	canonical	3	90	junction_15	10.2195380265448	89	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTTCTCTTAAATATTC	NA	False	NA	NA	False	NA	NA	NA	4497571	4443047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
12551	chr6	-	2649	14	Intergenic	novelGene_4182	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	9	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTAACTGTGAATAGCTT	NA	False	NA	NA	False	NA	NA	NA	71852238	71815683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_71815816_71821622_71821693_71823265_71823459_71828754_71828868_71829751_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849908_71851300
12552	chr17	+	2320	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	25	-5	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_3	1022.57543115249	1	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCTCCCAAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	13135386	13143949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137056_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
12554	chr9	+	2143	7	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-65	-2	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_2	704.078041760208	65	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGTATTCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	108183572	108215131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108195596_108195790_108204782_108204941_108208069_108208191_108212249_108212381_108213846
12555	chr1	-	3088	23	Antisense	novelGene_ENSMUSG00000026553.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACAATCATCCCACCAT	NA	False	NA	NA	False	NA	NA	NA	171949682	171931701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171931825_171932750_171932820_171933683_171933754_171935874_171935962_171937352_171937502_171938058_171938140_171938241_171938379_171939427_171939599_171939694_171939836_171940590_171940782_171940899_171940997_171942311_171942401_171942589_171942711_171944490_171944581_171944751_171944861_171945577_171945660_171945816_171945888_171946406_171946544_171946752_171946939_171947022_171947133_171947440_171947604_171948794_171948991_171949264
12556	chr8	+	4443	7	NIC	ENSMUSG00000031467.11	novel	10779	8	NA	NA	255	-15	intron_retention	FALSE	canonical	3	636	junction_4	36.4783040541452	17	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTGAGGGAAAATTTGC	NA	False	NA	NA	False	NA	NA	NA	18896549	18933422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18928185_18929620_18929745_18931753
12557	chr6	-	2120	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	17	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1766.05222718237	9	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAACCTGGGTGTCAGGCA	9286	False	NA	NA	False	NA	NA	NA	128415623	128407070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407844_128409384_128409550_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
12558	chrX	-	3466	13	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	10	10	intron_retention	FALSE	non_canonical	0	0	junction_3	408.103770504513	2	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTGTGAGATGAGGG	NA	False	NA	NA	False	NA	NA	NA	95000509	94978930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984209_94984508_94984555_94990016_94990165_94990472_94991055_94991375_94991462_94993942_94994961_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
12560	chr5	+	4062	11	NIC	ENSMUSG00000051674.16	novel	1243	8	NA	NA	-8204	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	34.4034881952397	106	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	8138	False	NA	NA	False	NA	NA	NA	73660006	73718133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_73660112_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
12561	chr9	+	4172	14	FSM	ENSMUSG00000032050.19	ENSMUST00000000590.16	4380	14	209	-1	53	1	multi-exon	FALSE	canonical	3	758	junction_13	85.8483594974439	495	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGAGGTCCGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	51959623	52000030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453_51984585_51992318_51992480_51993742_51993836_51996402_51996646_51997614
12562	chr15	-	4461	16	Antisense	novelGene_ENSMUSG00000084607.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	128	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTGAGCGAGCGGGCTGA	NA	False	NA	NA	False	NA	NA	NA	34531983	34495489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_34495560_34499432_34499576_34502453_34502622_34505101_34505279_34506562_34506811_34508262_34508351_34508746_34508935_34509900_34510162_34510473_34510572_34512059_34512170_34512875_34512996_34515985_34516108_34517974_34518165_34526308_34526463_34529027_34529376_34530007
12563	chr10	+	2693	12	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	0	3	intron_retention	FALSE	canonical	0	0	junction_4	708.842310734625	2	80	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1621	False	NA	NA	False	NA	NA	NA	79690498	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695285_79695357_79695435_79695547_79695614_79695790_79696657_79696808_79698249_79698376_79698493_79698704_79698811_79698890_79698978
12564	chr3	-	1591	7	NIC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-2	-456	intron_retention	FALSE	canonical	3	2549	junction_3	98.6069639190526	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGATGAGATGATCGCC	NA	False	NA	NA	False	NA	NA	NA	108352516	108336002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
12565	chr5	+	3386	19	NNC	ENSMUSG00000014668.16	novel	3201	19	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	116.908321156176	20	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTTCTTGTGTTGTAC	NA	False	NA	NA	False	NA	NA	NA	110283743	110319830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110283801_110283916_110284061_110286236_110286503_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306667_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
12567	chr10	-	3128	16	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	377	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	163.673740512439	18	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175944	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105836_62107367_62107604_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122420_62131605_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
12568	chr17	+	3297	14	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-27	0	intron_retention	FALSE	canonical	0	0	junction_3	357.835372547424	4	83	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165721	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21176258_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
12569	chr11	-	5017	1	Antisense	novelGene_ENSMUSG00000007739.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	112	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGGATAGACTTCTGTA	6895	False	NA	NA	False	NA	NA	NA	22954190	22949173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22949200_22954200
12570	chr7	+	2800	16	NIC	ENSMUSG00000006599.14	novel	2736	15	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	187.878920821067	755	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4711	False	NA	NA	False	NA	NA	NA	46445531	46473224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
12571	chr13	-	2705	7	NIC	ENSMUSG00000074863.6	novel	2859	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	87.1966169068502	44	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	6808	False	NA	NA	False	NA	NA	NA	62860567	62819597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_62821755_62823062_62823124_62823332_62823460_62853514_62853576_62853943_62854071_62855967_62856024_62860451
12572	chr12	+	2714	7	NNC	ENSMUSG00000021134.18	novel	3482	4	NA	NA	-73	-13	intron_retention	FALSE	canonical	3	53	junction_1	702.358744200964	1	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACTAAGTATTATAAAAC	NA	False	NA	NA	False	NA	NA	NA	80993076	80997258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80993227_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
12573	chr2	+	2963	7	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-18	-10	intron_retention	FALSE	canonical	3	1993	junction_1	225.275695291101	11	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACCAGATAGTATGTG	NA	False	NA	NA	False	NA	NA	NA	130116331	130121217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130119891_130120075_130120211_130120816
12574	chr11	+	4491	18	NIC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	32	-2	intron_retention	FALSE	canonical	3	393	junction_5	41.0250155772571	6	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTCTCACGTCACCTCA	NA	False	NA	NA	False	NA	NA	NA	119158885	119176278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_119159049_119160913_119161505_119163695_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
12575	chr9	+	3299	22	NNC	ENSMUSG00000032612.15	novel	3662	22	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	156.268839227079	7	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATTTGATGTTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	108225092	108269456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243993_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
12576	chr12	+	5654	34	FSM	ENSMUSG00000002900.18	ENSMUST00000169088.8	5557	34	40	-137	-19	-9	multi-exon	FALSE	canonical	3	20	junction_1	26.2601941375773	130	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGTATAAACATCCTAT	NA	False	NA	NA	False	NA	NA	NA	31315272	31379629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_31315344_31315478_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
12578	chr17	-	3496	16	NNC	ENSMUSG00000059409.10	novel	2926	15	NA	NA	60	812	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	119.658662684971	118	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTTCTTACTAGTTTT	1169	False	NA	NA	False	NA	NA	NA	47015868	46993104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46993418_46993599_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011073_47015758
12579	chr2	-	4314	7	NIC	ENSMUSG00000052406.15	novel	2281	8	NA	NA	3	-14	intron_retention	FALSE	canonical	3	152	junction_4	22.7131875545659	102	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGGATGGATCAAATGG	NA	False	NA	NA	False	NA	NA	NA	26854333	26843591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26844609_26845506_26845582_26846300_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
12580	chr1	+	2677	24	ISM	ENSMUSG00000026288.15	ENSMUST00000168783.8	3854	28	47626	1629	-8214	-1629	internal_fragment	FALSE	canonical	3	5	junction_1	151.13418717511	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCAGTGCCAGTCAAGAG	1156	False	NA	NA	False	NA	NA	NA	87595746	87645787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87595786_87597363_87597505_87604004_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411
12581	chr11	+	2950	16	NNC	ENSMUSG00000017421.19	novel	2898	17	NA	NA	-2	133	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	445.909836426852	63	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACAAATAATAGTGTATG	NA	False	NA	NA	False	NA	NA	NA	80274154	80296692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215_80286400_80286617_80286702_80289241_80289297_80293471_80293551_80294426_80294489_80295566
12582	chr6	-	5268	12	FSM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	55	11	-21	-11	multi-exon	FALSE	canonical	3	92	junction_10	18.3307536376882	86	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGCTGGACTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	92191851	92163703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
12583	chr4	+	4166	21	FSM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	-14	2	-8	-1	multi-exon	FALSE	canonical	3	46	junction_1	16.7996279720713	160	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGTTTGTGGTGTT	-27	True	NA	NA	False	NA	NA	NA	49632051	49656885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
12586	chr8	+	2840	4	NNC	ENSMUSG00000052446.18	novel	2713	4	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	165.064297236629	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCCAGTTTGTAGAGACT	NA	False	NA	NA	False	NA	NA	NA	72704937	72724174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719484_72719765_72719943_72720005_72721742
12587	chr14	-	3264	16	NIC	ENSMUSG00000037712.18	novel	3293	15	NA	NA	66	4	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	128.6974747227	389	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTGTACTTCTGATCT	NA	False	NA	NA	False	NA	NA	NA	45767509	45696247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45713874_45713908_45719888_45720024_45741953_45742188_45766881_45767049_45767390
12588	chr14	-	1365	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-9	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1391.09349411713	8947	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAACTTGCTTTTTACTT	NA	False	NA	NA	False	NA	NA	NA	63746214	63729801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731817_63733273_63733342_63733438_63733589_63734393_63734467_63735046_63735090_63737569_63737770_63746158
12589	chrX	+	2913	26	NNC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	6	-100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	265.700721865786	2	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGCCGCAGCCACAGCA	NA	False	NA	NA	False	NA	NA	NA	143101024	143152667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143101118_143102998_143103086_143105087_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
12590	chr6	-	2376	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	82	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.44491542262	2	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8567	False	NA	NA	False	NA	NA	NA	145021828	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945539_144945641_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
12591	chr7	+	2077	4	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.804857499957	25	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	297	False	NA	NA	False	NA	NA	NA	44465733	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465744_44465850_44465908_44477910_44478158_44478468
12592	chr8	-	2222	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	-33	0	-2	0	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	2888	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737931	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
12593	chr2	+	4913	18	Genic_Genomic	ENSMUSG00000085818.8	novel	698	4	NA	NA	555	42650	multi-exon	TRUE	non_canonical	0	0	junction_2	3.52941176470588	95	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGACCCGTCCCAGGATAA	5464	False	NA	NA	False	NA	NA	NA	5900965	5947592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_5902348_5902863_5903624_5904721_5904808_5907139_5907310_5907778_5907861_5908769_5908936_5915112_5915219_5916623_5916774_5918320_5918461_5919618_5919706_5922483_5922799_5924252_5924449_5926474_5926646_5928677_5928950_5934448_5934643_5935584_5935800_5937199_5937354_5947325
12594	chr7	-	3336	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	103	10	5	-10	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	22	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAACAAATATGACTTTA	9609	False	NA	NA	False	NA	NA	NA	3218926	3204507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
12595	chr11	+	3535	11	ISM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	17214	214	-2856	-214	3prime_fragment	FALSE	canonical	3	440	junction_4	38.9075828084963	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTTTGAATTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	106124965	106139751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
12596	chr5	-	2657	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	42	3	42	-3	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	1031	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCAAGGCTGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	34817450	34795882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
12597	chr11	-	2634	13	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	3	-9	intron_retention	FALSE	canonical	3	937	junction_7	74.5961348417821	60	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGAAAAGGTGGTGTTGT	4518	False	NA	NA	False	NA	NA	NA	6217743	6208927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
12598	chr19	-	3806	20	NNC	ENSMUSG00000024999.8	novel	3977	21	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	63.4325169808539	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTAGTCTTACGAGGTT	2340	False	NA	NA	False	NA	NA	NA	38807629	38776571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783539_38784069_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
12599	chr10	+	2670	8	NNC	ENSMUSG00000020088.11	novel	897	8	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	598.725721675559	1383	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAACTTGCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	61516097	61529068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525390_61525481_61525568_61525685_61527063
12600	chr9	-	3378	10	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	24	4	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	123.069989120915	97	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAACATTCTGATTGCAA	2175	False	NA	NA	False	NA	NA	NA	58157045	58125364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
12601	chrX	-	3778	5	FSM	ENSMUSG00000025264.13	ENSMUST00000112683.9	3796	5	18	0	-2	0	multi-exon	FALSE	canonical	3	302	junction_1	26.3201443765037	1629	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCATTTTCCTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	149879521	149870089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879160_149879252_149879424
12603	chr13	-	2929	28	Fusion	ENSMUSG00000118423.2_ENSMUSG00000042590.18	novel	2484	22	NA	NA	13	-2266	multi-exon	FALSE	canonical	0	0	junction_11	151.654415459607	3	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAGCCTTAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	107073440	106972766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_106972935_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
12604	chr8	-	3651	22	NNC	ENSMUSG00000000759.15	novel	3797	22	NA	NA	-16	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	50.9859702368969	4	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTCAGATGTTTCATGT	NA	False	NA	NA	False	NA	NA	NA	12722139	12664286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687662_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703471_12704245_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
12605	chr19	-	2201	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-50	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1105.5491565281	6	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCCATTCATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	15902344	15882498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886784_15892097_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
12606	chr4	+	3048	7	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	3360	-20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	266.773936757947	1	109	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCTGAATATTTTAACAAG	5671	False	NA	NA	False	NA	NA	NA	147109694	147145231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147109774_147136962_147137048_147140055_147140183_147141715_147142377_147142463_147142862_147143282_147143513_147143763
12607	chr6	-	4281	16	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-15	-15	intron_retention	FALSE	canonical	3	759	junction_12	53.665631459995	1	147	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACATGATGTGAATAAA	7890	False	NA	NA	False	NA	NA	NA	124806413	124792015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
12608	chr6	+	5444	9	NIC	ENSMUSG00000030232.19	novel	5932	8	NA	NA	-69	-24	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	104.343108900396	184	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAGGAATTGTTCACAAA	NA	False	NA	NA	False	NA	NA	NA	140568319	140601183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_140568785_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481_140596509_140597041
12609	chr5	-	2671	18	NNC	ENSMUSG00000036693.13	novel	2702	18	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	152.493394263875	12	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCAAGGCTGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	34817503	34795882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798343_34798686_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
12612	chr4	-	2455	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	230.538847051858	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726929	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697309_147697459_147698506_147699736_147699864_147702873_147702962_147725321_147725463_147726791
12613	chr2	+	2536	10	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	3	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	980.181275751243	3	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGATAGTATGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	130116368	130121222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118664_130119018_130119235_130119395_130119545_130119768_130119891_130120075
12614	chr5	+	2128	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	442	18	442	-18	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	2	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGCTACTGGATCATTCA	NA	False	NA	NA	False	NA	NA	NA	129864503	129875194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
12615	chr3	+	2971	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	36	4	36	-4	multi-exon	FALSE	canonical	3	661	junction_4	69.2886394407882	1005	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATTTGGAGGATAAATGA	NA	False	NA	NA	False	NA	NA	NA	67490109	67511566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
12616	chr5	-	2846	20	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	240.207112849957	9	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTTAACTGTGTGCT	8265	False	NA	NA	False	NA	NA	NA	137305928	137293981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294583_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305465_137305857
12617	chr13	+	1911	7	Antisense	novelGene_ENSMUSG00000034617.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTGGCACTGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	68709399	68717025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_68710552_68712438_68712621_68712717_68712812_68713228_68713344_68714183_68714374_68715060_68715104_68716890
12618	chr9	+	3146	11	Fusion	ENSMUSG00000103970.2_ENSMUSG00000006673.15	novel	756	3	NA	NA	125	2	multi-exon	FALSE	non_canonical	0	0	junction_10	256.433695133849	1	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1808	False	NA	NA	False	NA	NA	NA	108394946	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_108395176_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444_108437081_108437245
12620	chr7	-	2631	20	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-25	-453	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	614.277099174824	1	75	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGCTTGTTGTCTGCTCG	NA	False	NA	NA	False	NA	NA	NA	126165555	126146079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146854_126151267_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
12621	chr11	-	2259	12	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	16	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	1617.05597198394	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9281	False	NA	NA	False	NA	NA	NA	106679693	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106677273_106677371_106677734_106677901_106679098_106679286_106679524
12625	chr1	+	2064	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_3	618.999063004137	116	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCAGTTTTGTGATCTCT	NA	False	NA	NA	False	NA	NA	NA	59724123	59750667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731838_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
12626	chr8	+	2629	13	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_8	473.195402438452	55	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACAAGCTCTGTGTTTC	3016	False	NA	NA	False	NA	NA	NA	13389663	13428440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420168_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13421946_13422022_13422465_13422618_13422935_13423103_13423844_13423924_13427141
12627	chr6	+	2364	13	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	10	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	474.551915846236	12	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGAGTACTCTATCCCTT	NA	False	NA	NA	False	NA	NA	NA	71808326	71852236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839438_71845718_71845788_71848410_71848543_71849777_71849908_71851300
12628	chr6	+	2616	7	Intergenic	novelGene_4243	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	48	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCAGGGCCGCTCTAGCCGC	719	False	NA	NA	False	NA	NA	NA	124935037	124942451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_124935735_124936760_124936912_124937051_124937162_124938121_124939410_124939584_124939663_124941686_124941892_124942364
12629	chr6	+	2185	12	Antisense	novelGene_ENSMUSG00000004980.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTAGAACCTTCCCC	5282	False	NA	NA	False	NA	NA	NA	51438110	51446846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_51438413_51438898_51439545_51440390_51440473_51441067_51441194_51441409_51441526_51442156_51442225_51443124_51443202_51443281_51443385_51443474_51443685_51443884_51444031_51444162_51444276_51446650
12631	chr10	-	4927	12	NNC	ENSMUSG00000032788.16	novel	5124	11	NA	NA	3	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	104.094203997077	923	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCAGTTGTCTTAGTGT	6805	False	NA	NA	False	NA	NA	NA	78300806	78272587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78275710_78275893_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
12632	chr16	-	5071	16	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	1573	7	NA	NA	40	14	multi-exon	FALSE	non_canonical	0	0	junction_9	399.844914380008	158	78	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCCTAATCATGCCTCAGT	6306	False	NA	NA	False	NA	NA	NA	38370544	38318694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38354726_38354837_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
12633	chr14	-	3548	24	NIC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	9	302	intron_retention	FALSE	canonical	3	313	junction_7	23.3086465860006	1	80	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTCTGCCTCCCGAGC	9536	False	NA	NA	False	NA	NA	NA	55872658	55864452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55864902_55864991_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588
12634	chr2	+	1767	13	ISM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	-16	2738	-16	-1401	5prime_fragment	FALSE	canonical	3	1260	junction_7	154.665409477649	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAGAGAAGAAACGGGAA	NA	False	NA	NA	False	NA	NA	NA	84867561	84874715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662
12635	chr5	+	4622	17	FSM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	43	8	8	-8	multi-exon	FALSE	canonical	3	373	junction_9	134.520909155417	66	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTAAGCAATGAAGTTT	NA	False	NA	NA	False	NA	NA	NA	74696152	74759443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
12639	chrX	-	1725	11	Antisense	novelGene_ENSMUSG00000031353.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCGCCCTGGGAAATTGGA	NA	False	NA	NA	False	NA	NA	NA	161561791	161543385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_161543704_161544570_161544703_161552834_161552932_161554046_161554165_161555200_161555362_161556191_161556317_161556434_161556513_161557546_161557624_161558729_161558789_161560766_161560878_161561342
12641	chr3	+	3568	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-3	-35	intron_retention	FALSE	non_canonical	0	0	junction_7	279.992201057567	1	103	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTTAAAAAAATAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	102965660	102975187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102973250_102974048
12644	chr14	+	3650	21	Fusion	ENSMUSG00000094157.8_ENSMUSG00000079273.3_ENSMUSG00000094954.2	novel	1751	5	NA	NA	-136675	-341	multi-exon	TRUE	canonical	0	0	junction_1	3.37490740613724	11	60	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAACTCTTCACTCTTAAG	NA	False	NA	NA	False	NA	NA	NA	41903566	42293738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_41903715_41965681_41965801_42040240_42040373_42132167_42132331_42133285_42133418_42134097_42134279_42151692_42151784_42178928_42179073_42233407_42233540_42234391_42234555_42235514_42235647_42236325_42236508_42237333_42237425_42248067_42248212_42283329_42283403_42284419_42284679_42285883_42285994_42286712_42286876_42287840_42287973_42288667_42288850_42292961
12645	chr7	+	3147	11	Antisense	novelGene_ENSMUSG00000054753.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCCTAAAGACCTTTCC	NA	False	NA	NA	False	NA	NA	NA	3204644	3219025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_3205914_3207751_3207912_3208057_3208266_3208387_3208498_3208594_3208737_3208893_3209114_3209267_3209384_3211072_3211252_3212044_3212198_3213719_3214128_3218843
12646	chr11	-	2829	16	NNC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	16	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	180.245462263733	34	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAAAATGTCTCTCTTT	1146	False	NA	NA	False	NA	NA	NA	107080162	107057485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107058468_107059107_107059162_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064530_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107077460_107077518_107077634_107077749_107079942
12647	chr9	+	3280	11	NIC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	232.186649056314	541	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1163	False	NA	NA	False	NA	NA	NA	108394301	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108394440_108395965_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
12648	chr1	-	2323	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2676.48846825651	1	73	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287032	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281460_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286932
12650	chr10	+	2833	19	NNC	ENSMUSG00000019977.17	novel	2793	18	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	322.544269140773	1071	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTATTTCTTAGACA	NA	False	NA	NA	False	NA	NA	NA	21171909	21244797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184929_21184993_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
12652	chr16	-	6469	55	FSM	ENSMUSG00000041720.15	ENSMUST00000232232.2	6630	55	160	1	160	0	multi-exon	FALSE	canonical	3	103	junction_39	24.3659232686811	118	38	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTTGTTTTGTTATG	NA	False	NA	NA	False	NA	NA	NA	17223597	17098216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17098485_17098580_17098665_17098883_17098974_17099712_17099873_17100149_17100271_17100480_17100607_17100686_17100792_17101163_17101274_17102310_17102382_17102459_17102533_17103070_17103142_17104515_17104646_17108978_17109100_17110743_17110798_17111706_17111875_17113235_17113327_17114759_17114954_17115073_17115154_17115414_17115535_17117305_17117434_17118856_17118965_17120854_17121007_17121148_17121308_17125566_17125695_17125929_17126087_17127169_17127263_17130215_17130336_17133412_17133503_17134825_17134910_17135157_17135240_17136143_17136269_17136346_17136418_17140851_17140935_17142976_17143111_17143257_17143395_17143804_17143914_17166578_17166630_17168625_17168795_17170601_17170706_17171913_17172098_17172734_17172831_17173947_17174081_17175409_17175540_17176150_17176252_17176758_17176951_17178360_17178458_17181810_17181877_17185267_17185417_17191213_17191281_17194781_17195042_17196305_17196379_17199664_17199754_17204099_17204194_17207204_17207322_17223497
12653	chr4	+	4277	20	FSM	ENSMUSG00000028309.15	ENSMUST00000167496.8	4312	20	35	0	2	0	multi-exon	FALSE	canonical	3	48	junction_4	16.450883834839	142	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTGTTTGTGGTGTTC	16	True	NA	NA	False	NA	NA	NA	49632094	49656886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
12654	chr13	-	4279	32	NIC	ENSMUSG00000021585.11	novel	5141	32	NA	NA	-39	-647	combination_of_known_junctions	FALSE	canonical	3	15	junction_31	37.1226557681413	21	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCACAATGACATACTTC	NA	False	NA	NA	False	NA	NA	NA	74956097	74841133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74955937
12655	chr6	+	2715	14	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	535.842344119499	33	28	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	71808334	71852238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848414_71848543_71849777_71849908_71851300
12656	chr4	-	2735	8	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	529.182079694114	26	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGTGTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	141327227	141303377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317405_141323205_141323260_141327158
12657	chrX	+	2919	26	NNC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	0	-96	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	267.176454052373	1	59	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCGCAGCCACAGCAGCCG	NA	False	NA	NA	False	NA	NA	NA	143100998	143152671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128656_143129692_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
12658	SIRV7	-	2437	6	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1828.91786584308	3	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147918	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1349_1409_2676_2993_3112_3809_3897_114680_114989_147608
12660	chr1	+	2744	21	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	16	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_20	242.148151964866	71	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	2780	False	NA	NA	False	NA	NA	NA	171910111	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940733_171949630
12661	chr16	+	3291	17	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	0	93	intron_retention	FALSE	canonical	0	0	junction_1	36.6614046887186	353	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGATACTTTTTTTTTCT	6401	False	NA	NA	False	NA	NA	NA	44167776	44207599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
12662	chr3	-	2525	17	NIC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	7	1	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	136.057834669673	126	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAGTATGATATTTTTC	NA	False	NA	NA	False	NA	NA	NA	95763190	95737932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95757006_95757103_95758874_95759006_95760755_95760950_95763060
12663	chr3	-	3280	4	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	109	-25	intron_retention	FALSE	canonical	3	6820	junction_1	1697.09758771328	10	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAAGTCCTATTTGTGA	NA	False	NA	NA	False	NA	NA	NA	86049900	86045271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86045418_86045789_86048734_86049004_86049109_86049814
12664	chr11	+	2113	12	Antisense	novelGene_ENSMUSG00000025130.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGAGCGCGCGTCGGTC	6814	False	NA	NA	False	NA	NA	NA	120451131	120463690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120451523_120451873_120452086_120452985_120453072_120453187_120453372_120453480_120453602_120454030_120454232_120454428_120454557_120454643_120454747_120458743_120458881_120458998_120459134_120462346_120462556_120463484
12666	chrX	-	2498	1	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	10148	-200	mono-exon	FALSE	NA	NA	NA	NA	NA	1432	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCTATTACTAGGTAAAA	NA	False	NA	NA	False	NA	NA	NA	36358028	36355530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_36355500_36358000
12667	chr11	-	3643	4	NIC	ENSMUSG00000020925.17	novel	2366	5	NA	NA	17	1	intron_retention	FALSE	canonical	3	518	junction_1	38.262252939418	35	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTCTGTCTTGTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	102588543	102575510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_102577323_102579626_102581163_102582936_102583025_102588336
12668	chr7	-	2382	21	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	324.148746719774	3	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153824	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118790_143122700_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
12669	chr4	-	3023	10	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-22	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	700.167757675894	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTGTCTTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	141325557	141303374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304104_141304160_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316618_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325424
12671	chr11	-	336	1	Intergenic	novelGene_2396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTTCTTGACGGCCAGG	NA	False	NA	NA	False	NA	NA	NA	69562933	69562597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_69562600_69562900
12672	chr11	-	3336	4	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	-25	76	intron_retention	FALSE	canonical	3	13166	junction_3	580.636432431403	4	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGGCAAAAAGAAGGAACC	NA	False	NA	NA	False	NA	NA	NA	69562073	69558131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558938_69559021_69561099_69561440_69561574_69561753
12673	chr2	+	4667	15	FSM	ENSMUSG00000005506.17	ENSMUST00000005643.14	4830	15	160	3	14	-3	multi-exon	FALSE	canonical	3	193	junction_2	185.405677653416	455	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGAAGAACTGTTTGTCT	2477	False	NA	NA	False	NA	NA	NA	90770901	90849832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
12675	chr10	+	4090	9	NIC	ENSMUSG00000019794.14	novel	1774	11	NA	NA	7	0	intron_retention	FALSE	canonical	3	353	junction_4	23.9321958875486	6	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGTTTCAATTTAGCAC	NA	False	NA	NA	False	NA	NA	NA	7601778	7638913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7636634_7637006
12676	chr15	+	614	6	FSM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	48	400	-4	11	multi-exon	FALSE	canonical	3	835	junction_1	29.5932424718887	6061	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGACCGCTGCGCAAATGG	382	False	NA	NA	False	NA	NA	NA	102234598	102239908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102234696_102234867_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
12677	chr10	+	1349	1	NIC	ENSMUSG00000037608.17	novel	5307	12	NA	NA	-1044	-2905	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAGGAGAGGAGAGAGGT	140	False	NA	NA	False	NA	NA	NA	20203750	20205099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_20203800_20205100
12678	chr11	+	4606	29	NIC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	1	18	junction_25	27.8112029621892	15	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGCCAGTTGTGATT	NA	False	NA	NA	False	NA	NA	NA	87295875	87446649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87440257_87440351_87442356_87442467_87445753_87445806_87446309
12679	chr12	+	2037	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	48	-62	intron_retention	FALSE	non_canonical	0	0	junction_9	2010.45982087632	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGTCTTGAACTTTCAT	NA	False	NA	NA	False	NA	NA	NA	24758287	24764083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24763603_24763753
12680	chr17	+	2058	1	Intergenic	novelGene_212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGGTTTGGAGGGCGT	NA	False	NA	NA	False	NA	NA	NA	40153888	40155946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
12682	chr18	+	3233	11	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	327.09356459582	2	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13105328	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549_13125255_13125349
12685	chr14	+	3223	8	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	1	intron_retention	TRUE	non_canonical	0	0	junction_2	720.826085056555	3	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTTAAAGTTTATTTT	9014	False	NA	NA	False	NA	NA	NA	55777845	55787475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780097_55781069_55781231_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496
12686	chr10	-	2678	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	11	4	0	0	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417405	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
12687	chr15	+	2422	16	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	22972	8	-25	-8	3prime_fragment	FALSE	canonical	3	1727	junction_8	135.87909658549	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTAATGTTCTGCCTGA	3174	False	NA	NA	False	NA	NA	NA	81779481	81799326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
12688	chr2	-	3091	7	NNC	ENSMUSG00000036281.14	novel	543	3	NA	NA	-1074	162	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	22.6966713173736	3	48	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCTCTTTACAGGCATC	NA	False	NA	NA	False	NA	NA	NA	26262228	26256463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26257123_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797
12689	chr4	-	3303	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	59	490	-7	9	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	4	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGTTTTGTTTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	126954886	126941376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
12690	chr14	+	1370	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	19	19	19	-19	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	907	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTAAGAACAACTACTG	NA	False	NA	NA	False	NA	NA	NA	4137855	4186955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
12691	chr16	-	2829	23	NIC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	5	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_16	86.1671089288542	571	5	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAACTCTGCCTTTAACT	NA	False	NA	NA	False	NA	NA	NA	13486029	13355829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
12692	chr6	-	4138	18	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-12	5	intron_retention	FALSE	non_canonical	0	0	junction_1	279.530587737673	1	113	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACGGGGGCTGACTGGTT	7920	False	NA	NA	False	NA	NA	NA	124806383	124791995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793951_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803397_124806272
12693	chr18	+	2756	4	NNC	ENSMUSG00000057561.11	novel	1905	4	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	761.070007000378	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTAAATGTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730823	46743276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731707_46731768_46740570_46741693_46741746
12694	chr5	-	3766	23	ISM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	16161	8	11513	-2	3prime_fragment	FALSE	canonical	3	318	junction_10	27.5101784319072	3	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGCAGTCTCTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	108761444	108717287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378
12695	chr16	-	2092	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAATAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973300_45975400
12696	chr18	-	2811	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	5	233	5	-233	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	2	90	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGCCTCTTGATCTCCT	204	False	NA	NA	False	NA	NA	NA	35087405	35070699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
12697	chr14	+	2902	4	FSM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	447	3	-16	-3	multi-exon	FALSE	canonical	3	3464	junction_1	114.952163963972	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTGGTGCCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	99536573	99552469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_99536659_99538816_99539691_99540853_99540914_99550586
12698	chr3	+	3024	16	NNC	ENSMUSG00000027775.10	novel	3011	16	NA	NA	41	-6	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_15	217.140466569965	974	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTATTTGGAGGATAAAT	NA	False	NA	NA	False	NA	NA	NA	67490114	67511564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508773_67510027
12699	chr2	-	3224	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	47	91	47	-91	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	1032	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGCTCTTAACCTCTGAA	9242	False	NA	NA	False	NA	NA	NA	121304501	121290806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
12700	chr8	-	3142	21	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	-1381	-462	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	196.001173465875	1	76	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCACCCCTGCATTGT	NA	False	NA	NA	False	NA	NA	NA	111566609	111537332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564876_111564982_111566503
12702	chr6	+	3129	12	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	141.343845443047	793	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCTGCTTACCTTACGC	5726	False	NA	NA	False	NA	NA	NA	83254374	83281910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83254554_83256945_83257147_83262747_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
12703	chr15	-	3592	16	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-15	3	intron_retention	FALSE	non_canonical	0	0	junction_4	11.0722877290809	3	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6979	False	NA	NA	False	NA	NA	NA	98560790	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545476_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98550420_98550768_98550860_98554482_98554594_98556110_98556317_98560703
12704	chr11	+	3119	9	NIC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	-6	1	intron_retention	FALSE	canonical	3	682	junction_1	164.304404992684	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	1418	False	NA	NA	False	NA	NA	NA	120675124	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678618_120678701_120678808_120678887_120678969_120679069
12705	chr11	-	2811	2	ISM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	2741	88	2707	-88	3prime_fragment	FALSE	canonical	3	630	junction_1	0	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11756218	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_11753064_11756095
12706	chr5	-	2705	1	ISM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	69787	3	12612	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	52	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCACTGTGTGGTCTCA	NA	False	NA	NA	False	NA	NA	NA	148266927	148264222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_148264200_148266900
12707	chr8	-	3790	18	FSM	ENSMUSG00000052488.8	ENSMUST00000079510.6	3713	18	-71	-6	-29	6	multi-exon	FALSE	canonical	3	101	junction_13	118.126552277382	677	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73229034	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
12708	chr15	-	2821	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	205	7	64	-7	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGCAGAGGCCCGGAAGC	NA	False	NA	NA	False	NA	NA	NA	81613999	81588460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
12709	chr2	+	3295	6	NNC	ENSMUSG00000005804.15	novel	3484	5	NA	NA	-14	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	56.2473110468403	268	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCACCCAGCATTGTTT	8311	False	NA	NA	False	NA	NA	NA	122580464	122591384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_122580625_122584508_122584651_122586045_122586134_122587974_122588062_122588430_122590609_122590744
12710	chr19	-	2702	16	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	309.045670842784	14	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCACAGTTCGTTTTC	NA	False	NA	NA	False	NA	NA	NA	40576807	40538702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539582_40546220_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
12711	chr11	-	2279	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1169.63592091727	3	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679144
12712	chr1	+	4813	9	NIC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	22	-7	intron_retention	FALSE	canonical	3	90	junction_4	15.5999799679359	3	120	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTGTGTGTACT	98	False	NA	NA	False	NA	NA	NA	75168857	75176024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75170929_75171484_75171588_75171706_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
12713	chr5	+	5524	6	Intergenic	novelGene_791	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	107	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTCACACGCCGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	106764620	106844451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_106766293_106767403_106767509_106782696_106783303_106783475_106786502_106814650_106814711_106844396
12714	chr5	+	3243	21	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	119.069087088127	15	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCCTATACTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	45827262	45857466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831735_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
12715	chr11	-	3831	28	NNC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-3	783	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	333.286330019366	2	135	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTAATACTTTCAAAATTG	NA	False	NA	NA	False	NA	NA	NA	98915007	98889989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913161_98913257_98913665_98913819_98914871
12717	chr12	+	2083	9	NNC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	-7	0	intron_retention	FALSE	canonical	3	31	junction_6	842.827968434247	47	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992270	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995330_80995868_80995943_80996267_80996379_80996493
12718	SIRV7	-	2414	4	NNC	SIRV7A	novel	2462	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2086.24846714543	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	147923	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3115_114680_114989_147608
12719	chr19	-	1962	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1543.11757061304	2	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902356	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884511_15886593_15886794_15894556_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
12720	chr16	+	3512	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	397.151806106211	1	100	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598608	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599861_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622940_13624422_13624608_13626845_13626955_13628367_13628521_13629416_13629474_13630953
12721	chr11	-	2978	23	NNC	ENSMUSG00000020917.18	novel	4162	27	NA	NA	-25	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1311.81255353798	1	73	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGATAGTAACAATGGCGT	747	False	NA	NA	False	NA	NA	NA	100414449	100367195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100367461_100372583_100372674_100372970_100373126_100374534_100374629_100375425_100375548_100383330_100383442_100384370_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265
12722	chr13	+	3985	8	FSM	ENSMUSG00000074794.11	ENSMUST00000159690.8	4132	8	2	145	2	-145	multi-exon	TRUE	canonical	2	5	junction_6	68.2094613103263	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCTATGGCTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	81031530	81044009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039568_81039762_81041488
12723	chr18	-	5800	10	Antisense	novelGene_ENSMUSG00000024576.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGAGCTCGGGCGCTCTCT	7725	False	NA	NA	False	NA	NA	NA	61718627	61688338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61688943_61689571_61689680_61701333_61701459_61702531_61702631_61708477_61708619_61709575_61709655_61710246_61710322_61711735_61711837_61713401_61717473_61718230
12724	chr14	-	2734	10	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	-18	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	323.847853318137	19	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCAGTGGCTTGTGAGA	6412	False	NA	NA	False	NA	NA	NA	66071375	66056481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66057548_66059029_66059191_66061566_66061710_66063956_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
12725	chr2	-	3946	2	ISM	ENSMUSG00000026958.14	ENSMUST00000131665.8	958	6	-45	-2177	3	-1	intron_retention	FALSE	canonical	3	281	junction_1	0	24	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTCTAGTAGGATCCAT	9018	False	NA	NA	False	NA	NA	NA	25246354	25242302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25244647_25244752
12726	chr14	+	2193	9	NIC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	1	0	intron_retention	FALSE	canonical	3	1356	junction_4	129.631207662353	53	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9039	False	NA	NA	False	NA	NA	NA	55777870	55786329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
12727	chrX	-	3108	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3362	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.813485334196	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227930	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086693_23086801_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
12728	chr2	+	3615	25	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	15	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	182.525568985097	1	128	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAATGGTGGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	166747993	166788302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776806_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
12729	chr11	-	4879	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	-8	-849	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	22	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATCTAGACCCTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	98084110	98045922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
12730	chr2	+	2547	11	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_10	3467.79791942956	81	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTTTTATCATTTTG	7481	False	NA	NA	False	NA	NA	NA	75489610	75499751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75498344
12731	chr13	-	2444	5	NNC	ENSMUSG00000074863.6	novel	1705	5	NA	NA	7	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	67.2955236252754	4	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCTGGTTCCTGGGAAA	7978	False	NA	NA	False	NA	NA	NA	62872016	62819601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62821755_62823062_62823124_62823332_62823460_62835881_62835896_62871927
12732	chr7	+	2844	13	ISM	ENSMUSG00000004056.16	ENSMUST00000051356.12	2923	14	2763	1	-41	-1	3prime_fragment	FALSE	canonical	3	377	junction_5	57.3139502118715	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCAGTCCACATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	27308045	27338877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
12733	chr5	+	3491	19	NNC	ENSMUSG00000036817.15	novel	3714	20	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	330.903854784303	1	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATGTGCGATTTCAAGT	NA	False	NA	NA	False	NA	NA	NA	139186423	139235547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223682_139224585_139224695_139226987_139227149_139231099_139231200_139232447_139232616_139233824_139233918_139234172
12735	chr10	-	4149	18	Intergenic	novelGene_3415	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGCCAGGGGCACAGAG	NA	False	NA	NA	False	NA	NA	NA	25399412	25258103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_25258256_25317467_25317953_25319636_25319851_25336687_25336793_25343991_25344037_25345093_25345168_25347314_25347538_25348974_25349060_25354904_25355058_25355563_25355662_25360103_25360277_25364846_25364990_25377719_25378284_25380029_25380156_25382070_25382170_25383672_25383754_25388868_25388978_25398192
12736	chr4	+	2206	5	NIC	ENSMUSG00000028936.16	novel	2051	4	NA	NA	-4	-2	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	2499.4547780466	207	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTCACTGTGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	152410319	152418525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152410353_152411937_152412043_152413716_152413871_152414460_152414586_152416736
12737	chr4	-	3652	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	411.011597004236	3	120	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAGAACATTGCCACTC	NA	False	NA	NA	False	NA	NA	NA	135080467	135047805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051417_135052129_135052592_135054402_135054532_135056318_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
12740	chr15	+	2011	13	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	1	183	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_11	286.620866011764	209	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTGGCTGTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	80832713	80853503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851822_80851967_80852862
12741	chr16	-	6007	3	FSM	ENSMUSG00000046962.17	ENSMUST00000113734.9	6010	3	-5	8	-4	-8	multi-exon	FALSE	canonical	3	60	junction_2	13	140	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAACTTGTTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	97763826	97748642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_97754294_97757957_97758101_97763613
12743	chr10	+	2755	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	31	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	781.629423419791	1	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTCTTGATCAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	41395527	41407028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400097_41400142_41402822_41402880_41404667_41406078_41406115
12745	chr5	-	2385	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-50	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	758.096357156987	2	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTGCTTGTTAATAAC	2270	False	NA	NA	False	NA	NA	NA	138170130	138162864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165697_138165808_138165897_138166102_138166233_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
12746	chrX	+	2453	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	-83	-6	-22	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	1381	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	133501951	133507809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
12747	chr1	-	3690	13	Antisense	novelGene_ENSMUSG00000026439.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	106	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTAAGGTTGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	132433392	132405358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_132405612_132412474_132412656_132417324_132417466_132418158_132418321_132420288_132420399_132421550_132421674_132421761_132421913_132422007_132422072_132422588_132422712_132423944_132424012_132424534_132424766_132425666_132425858_132431499
12748	chr16	+	3673	10	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-8	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1284.5748203728	55	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACACTTGCAAAGTGATGA	NA	False	NA	NA	False	NA	NA	NA	84571002	84619778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613639_84613691_84615664_84618147_84618191_84619674
12749	chr1	+	2449	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	54	4	-19	-4	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	143	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4878099	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
12750	chrX	-	3313	14	NIC	ENSMUSG00000036932.15	novel	3364	15	NA	NA	38	-2	intron_retention	FALSE	canonical	2	8	junction_13	320.924293824671	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGGTTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	47602398	47563823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47602112
12751	chr5	+	2870	5	Intergenic	novelGene_766	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	55.6124985951899	2	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTGTGTTGAATTACA	NA	False	NA	NA	False	NA	NA	NA	104719603	104732487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104719638_104720232_104720411_104728353_104728481_104728722_104728784_104730017
12752	chr16	+	2987	6	NNC	ENSMUSG00000058550.16	novel	1271	6	NA	NA	21	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	218.062926697777	9	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAATATTACACTAAATC	NA	False	NA	NA	False	NA	NA	NA	48104118	48114578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109711_48109916_48111678_48113273_48113470_48114061
12753	chr11	+	3152	12	NNC	ENSMUSG00000059248.14	novel	3784	11	NA	NA	189	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	258.51147328152	3	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	885	False	NA	NA	False	NA	NA	NA	117157260	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117157422_117181223_117181326_117181768_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
12755	chr11	-	1766	9	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCATCCCCAAGCTCCTC	NA	False	NA	81	True	NA	NA	NA	72342381	72338825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
12756	chr8	-	4354	18	NIC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	645	junction_15	52.6342080931374	242	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAATATAGTCTTGTTG	3355	False	NA	NA	False	NA	NA	NA	105261247	105237666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105256749_105257024_105257129_105261143
12757	chr5	+	2650	10	NNC	ENSMUSG00000050017.12	novel	2632	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	450.62765555458	2	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478623	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486179_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
12758	chr2	-	3621	17	NNC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	-168	-5	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	92.9938674053295	34	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATAGCTTCCTATTCCAA	NA	False	NA	NA	False	NA	NA	NA	91536247	91504968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512455_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91535925
12759	chr12	-	2989	1	Antisense	novelGene_ENSMUSG00000021134.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATACCGTCTATCATTTC	NA	False	NA	NA	False	NA	NA	NA	80997364	80994375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_80994400_80997400
12760	chr4	+	2716	25	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	126.126231961828	231	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	148642914	148666850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665599_148666229_148666292_148666740
12761	chr5	-	2952	14	NNC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	4	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	224.209089861074	3	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCCCAAGTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	52347852	52307555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347664
12762	chr13	+	2002	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-11	648	intron_retention	FALSE	canonical	3	12	junction_1	0	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTGTTTCATTTTTCTT	1236	False	NA	NA	False	NA	NA	NA	74547801	74556113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74547912_74554221
12763	chr19	+	3650	8	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-218	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1182.49209342829	1	127	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATCTGACTGCAAAATG	849	False	NA	NA	False	NA	NA	NA	44281894	44295285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44281988_44282766_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291978_44293203
12764	chr11	-	2781	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	29	151	2	113	multi-exon	FALSE	canonical	3	411	junction_2	109.5	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGCCTATTTCAAACTAAA	NA	False	NA	NA	False	NA	NA	NA	11758930	11750438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11753064_11756095_11756216_11758894
12765	chr9	-	2892	16	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	3	-6	intron_retention	FALSE	non_canonical	0	0	junction_4	615.550831911278	3	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTCTGGGACCA	NA	False	NA	NA	False	NA	NA	NA	36678902	36643727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653004_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663682_36670029_36670621_36674632_36674694_36676349_36676477_36678845
12766	chr11	-	2128	9	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_7	1388.5358239437	6	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676307_106677790_106677901_106679098
12767	chr10	+	2819	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	91	12	4	-12	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	1	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGATCAAAAGTGTCATA	NA	False	NA	NA	False	NA	NA	NA	41395500	41407032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
12768	chr16	-	3056	14	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	424.032836174094	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8110	False	NA	NA	False	NA	NA	NA	4867727	4831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839249_4847374_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867672
12769	chr11	+	4273	23	NNC	ENSMUSG00000017119.21	novel	4789	24	NA	NA	203	-33	intron_retention	FALSE	non_canonical	0	0	junction_9	80.6260626811894	1	119	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAATAAACCACAATTCA	557	False	NA	NA	False	NA	NA	NA	101443262	101472744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101456529_101456608_101457021_101457233_101457913_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
12770	chr6	+	3166	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	56	7	43	-4	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	3	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGGCTTATGTGTCTTT	9	False	NA	NA	False	NA	NA	NA	29348160	29376667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
12772	chr11	+	3025	11	Intergenic	novelGene_2446	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCGGGCGAACACAGAGA	3838	False	NA	NA	False	NA	NA	NA	88722311	88755347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_88722651_88723127_88723194_88723964_88724042_88725487_88725554_88725903_88726057_88727837_88728016_88729755_88729908_88730449_88730578_88731994_88732127_88735082_88736690_88755220
12773	chr8	-	4271	8	NIC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	5	4	intron_retention	FALSE	canonical	3	544	junction_2	46.3676523416214	4	105	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTGGTCAAATGAGTGAA	NA	False	NA	NA	False	NA	NA	NA	110419887	110397952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110399274_110402007_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
12776	chr9	+	2588	4	NIC	ENSMUSG00000032518.7	novel	1599	6	NA	NA	-1	-6	intron_retention	FALSE	canonical	3	2998	junction_1	1276.51200107515	40	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTCTTATGGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	119956853	119960619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119958343_119959183_119959963_119960065_119960232_119960465
12777	chr16	-	3335	28	Antisense	novelGene_ENSMUSG00000038084.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGAGCCGGCTGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	29454395	29398197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_29398387_29404832_29405155_29405787_29405884_29407068_29407176_29408496_29408565_29421027_29421088_29424333_29424433_29426498_29426587_29427169_29427283_29429483_29429567_29429671_29429745_29430212_29430282_29430363_29430471_29430726_29430855_29432780_29432853_29432941_29433017_29433866_29433981_29434722_29434789_29435431_29435507_29436936_29437104_29439196_29439351_29439587_29439698_29440282_29440361_29444279_29444422_29447513_29447627_29448435_29448532_29448892_29449014_29454045
12778	chr2	+	3750	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	-30	0	-14	0	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	96	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	103858174	103887849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
12779	chr19	-	2571	9	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-14	-15	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	281.537713947883	5	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAGACAAGTGAAATGGAG	8423	False	NA	NA	False	NA	NA	NA	43512938	43488205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493773_43495133_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
12780	chr11	-	2873	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	0	88	0	-88	multi-exon	FALSE	canonical	3	411	junction_2	109.5	2	95	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758959	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11753064_11756095_11756216_11758894
12781	chr9	+	3026	13	NIC	ENSMUSG00000032058.15	novel	3430	15	NA	NA	3	-189	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	162.095308040945	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATTGTGTAAATGCTTT	10	True	NA	NA	False	NA	NA	NA	50768259	50792542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_50768399_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
12782	chr10	-	2030	12	NIC	ENSMUSG00000040354.15	novel	3065	20	NA	NA	-22	-3647	intron_retention	FALSE	canonical	3	1496	junction_2	88.4216046296902	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGCTGAGGACAACTACA	NA	False	NA	NA	False	NA	NA	NA	127147569	127135864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
12783	chr19	+	3729	12	NNC	ENSMUSG00000034820.5	novel	3315	11	NA	NA	3	78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	114.683971082015	464	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGATTCTGCATTGAATAGA	NA	False	NA	NA	False	NA	NA	NA	10502632	10525095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509494_10509561_10510183_10510288_10510389_10510497_10510656_10510807_10512463_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
12784	chr15	-	2962	13	NIC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	0	4	intron_retention	FALSE	canonical	0	0	junction_11	1024.91491516776	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTGCTTGAATTTCCT	2663	False	NA	NA	False	NA	NA	NA	43146115	43113449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43144414_43144625_43145998
12785	chrX	+	3549	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	29	1	29	-1	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	294	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTCGCATTTGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	7563398	7576500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
12786	chr8	+	3597	3	NNC	ENSMUSG00000047710.9	novel	4013	2	NA	NA	17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	104.5	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTCATGTGTACTTAAT	NA	False	NA	NA	False	NA	NA	NA	13919720	13931637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13919812_13927797_13927915_13928248
12787	chr3	-	2410	16	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	-885	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	113.494121237867	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGATATTTTTCATATGG	NA	False	NA	NA	False	NA	NA	NA	95764082	95737926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763977
12788	chr5	+	3244	15	FSM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	25	0	25	0	multi-exon	TRUE	canonical	3	384	junction_1	91.6660977100463	892	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTCTGACGCAGTGA	NA	False	NA	NA	False	NA	NA	NA	24890846	24915376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
12789	chr1	-	2591	13	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	304.428004168838	110	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624077	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611718_177612461_177612565_177623777
12792	chr2	+	4784	4	FSM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	-8	-1349	4	1349	multi-exon	FALSE	canonical	3	133	junction_3	2.16024689946929	308	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACGTCATCCCTTGTAAA	NA	False	NA	NA	False	NA	NA	NA	156389507	156412241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_156389804_156392568_156393370_156397746_156397977_156408784
12793	chr4	+	4539	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	15	-4	-2	4	multi-exon	TRUE	canonical	3	173	junction_5	63.7427555796648	736	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGATACTGAAATTGTG	NA	False	NA	NA	False	NA	NA	NA	124978941	125007035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
12794	chrX	+	2785	14	Antisense	novelGene_ENSMUSG00000036916.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	17	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCAGAACTCTCTGAAGAT	NA	False	NA	NA	False	NA	NA	NA	47631203	47661178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_47632166_47632426_47632580_47636140_47636205_47637434_47637566_47638921_47639239_47642855_47642986_47647145_47647291_47647917_47648021_47648543_47648700_47652556_47652780_47655584_47655692_47655822_47655989_47657995_47658103_47661157
12795	chr6	-	5252	12	FSM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	72	10	-4	-10	multi-exon	FALSE	canonical	3	92	junction_10	18.3307536376882	92	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGGACTTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	92191834	92163702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
12797	chr12	+	1957	9	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	45	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2732.56985272106	14	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758284	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759035_24760403_24760490_24761445_24761541_24761667_24761875_24762659_24762765_24762859_24762974_24763078
12798	chr1	-	1229	3	NIC	ENSMUSG00000006299.14	novel	1817	11	NA	NA	12	760	intron_retention	FALSE	canonical	3	1233	junction_1	6.5	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTTTGAAGCAGGAGACC	NA	False	NA	NA	False	NA	NA	NA	74323827	74321594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74321710_74322252_74323201_74323661
12799	chr1	-	1584	2	ISM	ENSMUSG00000006299.14	ENSMUST00000187046.2	524	6	2402	-1090	1565	-3	intron_retention	FALSE	canonical	3	1324	junction_1	0	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTCTGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	74320736	74319001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_74320097_74320247
12800	chr2	-	3592	22	NNC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	3	-7	intron_retention	FALSE	canonical	1	2	junction_3	82.0688279251434	1	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTAGCTTCAGTACT	NA	False	NA	NA	False	NA	NA	NA	11782356	11747392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_11747845_11748436_11748569_11751574_11751644_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
12801	chr6	-	2261	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	28	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	616.10865644236	14	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8918	False	NA	NA	False	NA	NA	NA	47790336	47773074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773728_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
12802	chr15	-	1850	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-4	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2706.57220299034	36	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAACTGCTTCCACTTAT	110	False	NA	NA	False	NA	NA	NA	31601689	31590964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592426_31592612_31592791_31592904_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601447
12803	chr2	-	4108	10	NIC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	-5	4	intron_retention	FALSE	canonical	3	14	junction_4	91.3527959798349	12	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGCAGTTGTGATG	NA	False	NA	NA	False	NA	NA	NA	5900150	5875835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_5876833_5878553_5878631_5879037_5881373_5881651_5881813_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
12804	chr17	-	3656	13	NNC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-400	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	235.102149784585	437	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGGTTTTTCATTGTTC	NA	False	NA	NA	False	NA	NA	NA	28726780	28618076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28647325_28647441_28648194_28648338_28656965_28657111_28659901_28660028_28718339_28718393_28726209_28726444_28726747
12805	chr6	-	3254	16	ISM	ENSMUSG00000030309.17	ENSMUST00000111569.9	3697	19	12637	6	7227	-5	3prime_fragment	FALSE	canonical	3	65	junction_10	9.12481354451817	3	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCACCTCCAGTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	148785098	148743995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945
12806	chr8	-	2952	18	NIC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	1	0	intron_retention	FALSE	canonical	3	115	junction_14	25.6080383141227	204	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	NA	False	NA	NA	NA	84467811	84449992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
12807	chr10	+	2882	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	32	8	32	-8	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	1	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCAAAAGTGTCATATTTT	NA	False	NA	NA	False	NA	NA	NA	41395441	41407036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
12808	chr14	-	3630	7	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-4	intron_retention	FALSE	canonical	3	2964	junction_2	204.618343915365	2	95	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGCTTTTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	63746217	63729799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63730296_63731190_63731461_63731805_63733342_63733438_63734465_63735046_63735090_63737569_63737770_63746158
12809	chr8	+	2427	16	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	465.232768502917	2	22	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTGCTGTGTGAATACAA	NA	False	NA	NA	False	NA	NA	NA	75836197	75854322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75837008_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
12810	chr9	-	3407	16	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	381.460957664375	1	64	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCACCTTGTGTTCCTG	8715	False	NA	NA	False	NA	NA	NA	31123111	31060856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088351_31089192_31089375_31122918
12811	chr6	-	2572	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	19	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTTGTCTCATGACTT	NA	False	NA	NA	False	NA	NA	NA	148847937	148822559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823087_148823156_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
12813	chrX	+	3498	27	NNC	ENSMUSG00000000037.18	novel	1894	3	NA	NA	14637	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.642344862659	1	58	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTTCATTATTTATGTC	4668	False	NA	NA	False	NA	NA	NA	159921900	160039886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922193_159927751_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
12814	chr1	+	2337	4	FSM	ENSMUSG00000026349.15	ENSMUST00000125760.8	665	4	45	-1717	45	-494	multi-exon	FALSE	canonical	3	495	junction_3	16.8193010820572	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGTAAGAGGTGAGTGGT	NA	False	NA	NA	False	NA	NA	NA	127701945	127723043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094
12815	chr10	-	3058	16	NIC	ENSMUSG00000020130.10	novel	3752	17	NA	NA	33	-586	combination_of_known_splicesites	FALSE	canonical	3	18	junction_14	117.894566833628	657	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTTTCAGTTACA	NA	False	NA	NA	False	NA	NA	NA	115087339	115034362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115076753_115076853_115087286
12816	chr9	-	3583	28	NIC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	216.564648346816	18	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAACTATAATGTTGTT	8302	False	NA	NA	False	NA	NA	NA	95393938	95343039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382927_95384592_95384638_95393869
12817	chr4	-	2105	7	ISM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	7593	6	1820	-6	intron_retention	FALSE	canonical	3	388	junction_3	21.3600093632938	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAATGGGCTTTGTTTTT	10000	False	NA	NA	False	NA	NA	NA	132065423	132059239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041
12818	chrX	+	1019	6	NIC	ENSMUSG00000008682.14	novel	799	7	NA	NA	0	-6	intron_retention	FALSE	canonical	3	2920	junction_1	2616.27302856563	42	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTATGTTTTTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	73314462	73316735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315924_73316277_73316441_73316520
12819	chr16	-	3109	5	FSM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	-30	5	-30	-5	multi-exon	FALSE	canonical	3	285	junction_4	13.7204227340122	559	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGAGGTGGTTATACTC	NA	False	NA	NA	False	NA	NA	NA	37360181	37330156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
12820	chr12	+	3296	9	FSM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	14	0	14	0	multi-exon	FALSE	canonical	3	165	junction_6	24.0724816959116	378	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	2677	False	NA	NA	False	NA	NA	NA	80509882	80544896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
12821	chr6	-	3057	4	ISM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	8700	12	1681	-12	3prime_fragment	FALSE	canonical	3	1400	junction_3	128.288736839989	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACCAAGATACCTTCTGT	7885	False	NA	NA	False	NA	NA	NA	136796531	136790663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927
12822	chr4	-	1800	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-31920	63754	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.834128686216	4	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025967	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146912762_146913739_146914016_146976977_146977116_146978205_146978333_146982168_146982279_147021745_147022236_147022273_147022474_147025871
12823	chr4	+	2552	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5_ENSMUSG00000066007.16	novel	4244	5	NA	NA	21	-1907	multi-exon	TRUE	non_canonical	0	0	junction_1	38.577195336105	1	111	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGGTTCACATTATAGG	NA	False	NA	NA	False	NA	NA	NA	146093414	146552842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093432_146206936_146207223_146207708_146207846_146209452_146209550_146368119_146368209_146384369_146384431_146388486_146388614_146390758_146390916_146391665_146392511_146392925_146393429_146552609
12824	chr19	+	2359	2	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	9628	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	44292142	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44292388_44293189
12825	chr6	-	2495	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	86	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1832.37521420146	3	73	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTGGATTTGAATCTTA	8571	False	NA	NA	False	NA	NA	NA	145021824	144944880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945630_144945864_144946031_144950076_144950152_144953341_144953483_144955779_144955862_144961174_144961579_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
12826	chr5	+	2015	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-35	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1356.0504231038	1	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	721	False	NA	NA	False	NA	NA	NA	77099588	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110304_77110358_77112288_77112470_77114093_77114253_77114494
12827	chr3	-	2503	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	intron_retention	FALSE	canonical	1	178	junction_5	104.120554376886	929	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
12828	chr12	-	2667	7	Intergenic	novelGene_4331	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	22.4381866963938	9	63	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTCCTTGTATTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	23455074	23335136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23335425_23444244_23445458_23445541_23445744_23445827_23446506_23447833_23447895_23448096_23448224_23454976
12829	chr4	+	2901	15	NNC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	23	1284	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	102.958110166123	379	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTCTATTTCAGCATT	NA	False	NA	NA	False	NA	NA	NA	62327056	62342852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62327139_62327811_62327990_62329932_62330120_62331005_62331082_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
12830	chr5	+	2116	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-176	-3	intron_retention	FALSE	canonical	0	0	junction_8	1064.7410860143	1	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATATATTCTCGCTGTGTG	580	False	NA	NA	False	NA	NA	NA	77099447	77115349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114153_77114221_77114253_77114494
12832	chr4	+	1629	2	Intergenic	novelGene_2027	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAATCATTTGCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	146003174	146009153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146003379_146007728
12834	chr5	-	2611	6	NIC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	685	junction_2	57.0038595184572	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAACTACCGTAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	32942970	32893653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32894799_32895329_32895879_32896125_32896718_32922116_32922293_32931739_32931811_32942892
12835	chr11	-	2194	16	NIC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_13	319.864443510407	2177	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	35725325	35699207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723397_35723491_35723998_35724134_35725263
12836	chr11	-	3628	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	38	0	4	0	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	816	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCTTGTATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	70910091	70898267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
12837	chr3	-	2401	11	NIC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	4	39	intron_retention	FALSE	canonical	3	101	junction_2	785.320501451477	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTCTCTGCTGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	108352510	108333888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108334298_108334575_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
12838	chr4	-	6662	20	NNC	ENSMUSG00000045205.17	novel	6754	19	NA	NA	17	-20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	16.2903026742549	4	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGATTTTTAAACTGTC	7	True	NA	NA	False	NA	NA	NA	11322120	11261334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_11262879_11262933_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072_11317181_11321999
12839	chr16	+	2790	3	ISM	ENSMUSG00000022808.6	ENSMUST00000231389.2	2457	13	38888	15	22574	-15	3prime_fragment	FALSE	canonical	3	507	junction_2	17	5	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTATTTCCAGAAGATTT	NA	False	NA	NA	False	NA	NA	NA	33110701	33119920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_33112257_33115010_33115126_33118800
12840	chr2	-	2553	6	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	32	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	259.621724822866	1613	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGGACTTTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	75534953	75505858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75511688_75511801_75534707
12841	chr9	-	2909	20	NNC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_18	406.540652258859	93	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64080220	64044425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64074552_64074671_64075894_64075947_64080099
12843	chr16	+	3180	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTACTGTGTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	13598608	13632701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631815_13632182
12844	chrX	-	4451	17	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	199	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGCTGGCGGGCTGGCGG	NA	False	NA	NA	False	NA	NA	NA	84248654	84091910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_84092065_84097575_84097633_84133416_84133496_84148756_84148956_84151194_84151272_84153548_84153707_84182933_84183105_84185335_84185443_84187633_84187787_84192712_84192795_84193806_84193885_84196632_84196789_84221303_84221545_84222306_84222428_84234211_84234317_84246079_84246530_84246591
12845	chr15	-	3210	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	-20	-3	-15	3	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	560	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6979	False	NA	NA	False	NA	NA	NA	98560790	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
12846	chr8	-	2335	2	Antisense	novelGene_ENSMUSG00000071796.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAAACTTACAGCAAATG	NA	False	NA	NA	False	NA	NA	NA	20182442	20177871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20180119_20182354
12847	chr2	-	2873	13	NIC	ENSMUSG00000039536.17	novel	2976	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	81.3245811547775	5	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	False	NA	NA	False	NA	NA	NA	166838185	166790066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166792775_166792859_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
12848	chr13	-	3074	17	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	-483	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	81.0015431951762	1	63	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGTAGCTTCGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	119545971	119472066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472570_119472703_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509100_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545875
12850	chr8	+	2920	9	NNC	ENSMUSG00000048827.13	novel	2450	16	NA	NA	23848	18862	intron_retention	FALSE	non_canonical	0	0	junction_1	0	12	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGACTCCCTCGACCTCCC	NA	False	NA	NA	False	NA	NA	NA	110397964	110419880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_110399273_110402006_110402055_110403387_110404318_110405485_110405600_110406056_110406138_110408736_110408826_110409228_110409411_110410307_110410410_110419814
12851	chr15	-	2164	10	NIC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-1	-88	intron_retention	FALSE	canonical	3	5476	junction_5	321.299598659515	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGCTGCGTCTGCAGT	NA	False	NA	NA	False	NA	NA	NA	31601887	31591033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
12852	chr17	+	3108	4	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	-23	intron_retention	FALSE	non_canonical	0	0	junction_1	1458.01973771124	1	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGGGGAGGGGAGGTC	NA	False	NA	NA	False	NA	NA	NA	37313445	37321501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313600_37314177_37315796_37316941_37317087_37320310
12853	chr17	+	3840	21	NNC	ENSMUSG00000061950.18	novel	3850	20	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_12	111.455495602505	212	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGACACCACCCACTTTG	NA	False	NA	NA	False	NA	NA	NA	66090407	66148847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66090445_66090618_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66136863_66136986_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
12854	chr15	+	2397	11	NIC	ENSMUSG00000023010.16	novel	944	10	NA	NA	96	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	738.083030559571	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99291195	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_99291265_99291575_99291612_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
12855	chr16	-	2905	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	15	2	15	-2	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAACCATTGGCTCCTCAT	6281	False	NA	NA	False	NA	NA	NA	38370569	38345503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
12856	chr19	+	2972	2	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	9776	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	44292290	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44292643_44292683
12858	chr2	+	2538	9	NIC	ENSMUSG00000055612.16	novel	582	3	NA	NA	19	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	410.749296256244	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTGTGTTTATTTTTG	8819	False	NA	NA	False	NA	NA	NA	72306752	72317234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72307023_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
12860	chr1	+	7052	20	Genic_Genomic	ENSMUSG00000103435.2	novel	428	2	NA	NA	-20847	55248	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	62	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCGAGCCAGGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	176561235	176641690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_176563548_176564409_176564464_176565094_176565188_176566646_176566730_176567475_176567654_176570033_176570214_176577490_176577727_176582731_176584550_176585962_176586083_176588915_176589064_176596795_176597095_176597280_176597436_176601998_176602476_176607825_176607962_176609816_176609977_176610062_176610118_176616027_176616112_176620101_176620192_176621070_176621215_176641460
12861	chr2	-	4156	13	Intergenic	novelGene_2642	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTGTCGCGCCGGAAGT	3551	False	NA	NA	False	NA	NA	NA	69582478	69553173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_69553300_69562538_69562616_69562720_69562796_69563158_69563267_69563529_69563576_69564632_69564723_69566211_69566241_69566331_69566472_69571828_69572035_69573953_69574124_69576370_69576459_69579303_69579442_69579615
12862	chr12	+	5078	15	NIC	ENSMUSG00000021112.10	novel	5470	15	NA	NA	16	-11	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	41.9492526264577	61	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAATTGTAAAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	78795781	78887349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_78795881_78841018_78841108_78843876_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
12863	chr4	-	3189	5	ISM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	11582	4	11582	-4	3prime_fragment	FALSE	canonical	3	666	junction_4	75.5744665875982	3	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTCTTTGCTAATGGGA	NA	False	NA	NA	False	NA	NA	NA	132226230	132219346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263
12864	chr6	+	2538	17	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	15	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	347.194779401635	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTAGTTGCTGTTGTGTTT	5452	False	NA	NA	False	NA	NA	NA	125108886	125121711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108993_125109170_125109282_125110481_125110528_125110676_125110770_125111512_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963_125121316_125121381
12865	chr8	+	1553	3	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTCTATTGAGAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	43748118	43757532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43749573_43753663_43753745_43757514
12866	chr8	+	2610	11	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	296.445880389659	24	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387572_107395865
12867	chr17	+	5165	5	ISM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	-44	5	-44	-5	intron_retention	FALSE	canonical	3	47	junction_2	7.1239034243875	92	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTTTATGTGGAAATTCA	NA	False	NA	NA	False	NA	NA	NA	21926678	21944612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924
12868	chr17	-	2894	3	Intergenic	novelGene_149	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	153.5	580	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAAAGGTTGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	35219833	35215708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35218446_35219142_35219186_35219719
12870	chr5	+	3570	13	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-2	-25	intron_retention	FALSE	canonical	3	859	junction_7	68.3745302644844	6	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGTGCACCAGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	31652108	31670223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
12871	chr1	+	2536	22	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	68	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	193.202489150784	109	11	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATTTCTTGTGTGAAGT	390	False	NA	NA	False	NA	NA	NA	72346653	72434107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395779_72395839_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
12872	chr6	-	3123	24	NNC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	-4	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	48.5956270835619	3	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAGTTGCTATACTTGA	NA	False	NA	NA	False	NA	NA	NA	30873687	30748407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803211_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
12873	chr7	-	2859	15	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	3086	-1239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	66	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGACCCCGCGGAATTCA	NA	False	NA	NA	False	NA	NA	NA	79965865	79944215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79944338_79950046_79950180_79950782_79950910_79954109_79954339_79954424_79954591_79955663_79955775_79956120_79956268_79957303_79957442_79959138_79959232_79960485_79960635_79960815_79960935_79961970_79962074_79962777_79962956_79963273_79963303_79964850
12874	chr10	-	2364	17	ISM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	2802	5	-11	0	3prime_fragment	FALSE	canonical	3	1393	junction_15	223.691533911657	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	604	False	NA	NA	False	NA	NA	NA	127144853	127132094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776
12876	chr8	-	3800	24	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	2067	-457	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	233.74927190732	1	126	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCCTGCATTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	111569622	111537327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541281_111542530_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560504_111562178_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319
12877	chr11	+	1735	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	3	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGCCTCCATCCTTTA	3038	False	NA	NA	False	NA	NA	NA	75623741	75656406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75656200_75656252
12880	chr16	-	2432	5	NNC	ENSMUSG00000071533.12	novel	938	5	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	950.192348948359	23	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55850036	55835869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55837681_55838834_55838891_55842417_55842498_55844586_55845001_55849965
12881	chr10	+	3361	15	Fusion	ENSMUSG00000020250.12_ENSMUSG00000056821.14	novel	894	3	NA	NA	6918	0	multi-exon	FALSE	canonical	1	19	junction_1	270.598203532658	453	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	NA	False	NA	NA	NA	82654874	82733546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_82654958_82708771_82708847_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
12882	chr3	-	3293	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	-153	0	-153	0	multi-exon	FALSE	canonical	3	150	junction_5	23.7538396466589	472	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTGTTTCTTTTTAAAA	4197	False	NA	NA	False	NA	NA	NA	95189540	95160984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
12883	chr12	+	3301	6	NNC	ENSMUSG00000021134.18	novel	1498	8	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_5	766.232340742676	2	101	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80992309	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992447_80993349_80994156_80994269_80994369_80994569_80995943_80996267_80996373_80996490
12884	chr18	+	3547	14	Antisense	novelGene_ENSMUSG00000041891.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	453	8	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGACGCAGAGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	66113824	66135689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_66115784_66116897_66116958_66117222_66117348_66120826_66120976_66124401_66124472_66124562_66124759_66126145_66126279_66126649_66126709_66127855_66127978_66129750_66129855_66130671_66130733_66131445_66131553_66131635_66131794_66135445
12885	chr7	+	2728	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	254	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	270	False	NA	NA	False	NA	NA	NA	3339098	3347865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3339156_3341727_3341816_3345237_3345496_3345540
12886	chr13	+	3958	19	Intergenic	novelGene_1517	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCTGCGGAACAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	98987808	99062839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_98989457_98989905_98990007_98991650_98991741_98991821_98992087_98993396_98993483_98994892_98995066_98996270_98996495_98997146_98997301_99000214_99000387_99000937_99000995_99001474_99001598_99003555_99003679_99006749_99006828_99012109_99012243_99015124_99015232_99021019_99021173_99024973_99025050_99027184_99027299_99062758
12887	chr19	-	1617	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1087.72606845658	40	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902356	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883035_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
12888	chr11	-	3850	4	ISM	ENSMUSG00000025140.16	ENSMUST00000141254.8	840	7	-118	-1806	8	-2	intron_retention	FALSE	canonical	3	993	junction_3	13.6707311029399	4	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCCCCAGAGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	120534587	120530243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120532132_120532254_120532348_120532475_120532698_120532940
12889	chr11	-	4836	14	NIC	ENSMUSG00000018412.17	novel	5427	15	NA	NA	-108	-11	combination_of_known_splicesites	FALSE	canonical	3	61	junction_11	60.3367277042696	1	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATACAGAGAGTTTTGTCA	8650	False	NA	NA	False	NA	NA	NA	104332636	104224337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104233684_104233874_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104269510_104269653_104314747_104316120_104332550
12890	chr9	-	3369	11	Antisense	novelGene_ENSMUSG00000032042.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	55	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGGACACGTCACACCAGC	NA	False	NA	NA	False	NA	NA	NA	35127919	35122498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124590_35124680_35124829_35125038_35125128_35125228_35125351_35125481_35126924_35127003_35127108_35127231
12891	chr19	-	2847	11	NNC	ENSMUSG00000025228.6	novel	2757	11	NA	NA	32	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	90.9173250816367	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTCTGACCTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	46384105	46365251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46376125_46384064
12892	chr2	+	3278	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	46	0	intron_retention	FALSE	canonical	0	0	junction_13	164.640348774061	137	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	539	False	NA	NA	False	NA	NA	NA	31462708	31507531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501815_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
12894	chr11	+	4012	24	NIC	ENSMUSG00000020898.19	novel	4164	23	NA	NA	-9	-5	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	125.464113818784	312	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGACCTGTGTTCATC	5300	False	NA	NA	False	NA	NA	NA	68906950	68927291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68919867_68919938_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
12895	chr9	-	3354	22	Antisense	novelGene_ENSMUSG00000035202.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	220	5	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAACAACTTTATCGAA	NA	False	NA	NA	False	NA	NA	NA	123291717	123196008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_123196171_123200917_123201169_123206765_123206892_123221844_123221938_123224013_123224076_123238677_123238770_123240935_123241080_123247241_123247350_123247697_123247858_123256509_123256615_123260948_123261065_123265179_123265464_123267197_123267297_123270526_123270664_123281806_123281909_123282273_123282459_123283774_123283943_123284022_123284102_123284956_123285066_123288552_123288682_123290560_123290739_123291252
12896	chr1	+	4023	27	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	1	8075	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	833.390733033027	1	179	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAATGCAACGAGTACAG	NA	False	NA	NA	False	NA	NA	NA	185095329	185150471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133870_185139167_185139392_185139687_185139961_185143314_185143565_185143899_185143973_185145351_185145432_185145651_185145748_185146526_185146683_185147950_185148149_185150408
12898	chr15	-	4716	7	NIC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	0	-22	intron_retention	FALSE	canonical	3	2867	junction_5	193.956538659796	15	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGATTAAAGACTGAGAC	NA	False	NA	NA	False	NA	NA	NA	75781146	75767362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75772612_75772980_75773105_75781093
12899	chr2	-	3033	10	NNC	ENSMUSG00000058835.15	novel	3360	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	102.442154710492	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	22930200	22830375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_22832060_22836587_22836774_22840195_22840263_22843455_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
12902	chr17	-	3000	23	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	203.281834240621	13	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCATGTGCCTGTGGGGTG	NA	False	NA	NA	False	NA	NA	NA	36280644	36267712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272623_36272934_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
12904	chr15	-	2927	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	6	0	2	0	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	618	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	99549531	99518377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
12905	chr9	+	5635	29	Genic_Genomic	ENSMUSG00000103715.2	novel	1352	1	NA	NA	-61718	-1112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	210	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCTGAGCTAGAGCGGG	NA	False	NA	NA	False	NA	NA	NA	85569412	85631370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_85570566_85572259_85572397_85572747_85572821_85579173_85579318_85585066_85585212_85585703_85585797_85588496_85588657_85590075_85590225_85592427_85592541_85595648_85595772_85596240_85596300_85597349_85597470_85599603_85599706_85600413_85600510_85600946_85600986_85601065_85601149_85601915_85602001_85602794_85603400_85604327_85604506_85606099_85606280_85608663_85608791_85610462_85610638_85610726_85610847_85613136_85613306_85614681_85614793_85617025_85617156_85619523_85619618_85625427_85626116_85631186
12906	chr7	+	4369	28	NNC	ENSMUSG00000042055.14	novel	4550	29	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	46.1265331937257	164	60	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTTGTTTGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	129193611	129237460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_129193788_129194699_129194812_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235456_129236543
12907	chr13	+	2784	19	ISM	ENSMUSG00000037851.14	ENSMUST00000164260.8	3789	33	22205	-519	1382	-7	3prime_fragment	FALSE	canonical	1	598	junction_2	305.416013591339	2	61	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49863073	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
12908	chr17	-	3529	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	89	0	17	0	multi-exon	FALSE	canonical	3	301	junction_5	41.6619997386374	3	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTGTTCTGAAATTAAA	3840	False	NA	NA	False	NA	NA	NA	80203463	80155818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
12909	chr15	+	2398	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	471.219789445857	3	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798484_81799096
12910	chr6	-	2112	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	422	-2	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_7	880.556062719369	30	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTCTTGTCTCAGTCAG	NA	False	NA	NA	False	NA	NA	NA	83294113	83282674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83293906
12912	chr5	+	3187	10	NIC	ENSMUSG00000041264.17	novel	3148	10	NA	NA	16	-6	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	135.337438361387	35	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCCAGTTTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	149121385	149152232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_149121617_149124517_149124645_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
12913	chr11	+	3114	6	Antisense	novelGene_ENSMUSG00000082503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	480	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTAGGCTCTGGCGCGCAG	NA	False	NA	NA	False	NA	NA	NA	54608237	54678502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_54610549_54611066_54611182_54614397_54614502_54631063_54631377_54647231_54647386_54678385
12914	chr8	+	3087	21	NIC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	-4	-5	intron_retention	FALSE	canonical	3	950	junction_1	72.417038740893	1204	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAACATTCTTTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	94941200	95041483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
12915	chr9	+	3388	10	Fusion	ENSMUSG00000103970.2_ENSMUSG00000006673.15	novel	756	3	NA	NA	48	2	multi-exon	FALSE	canonical	3	32	junction_1	198.101046669012	54	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1731	False	NA	NA	False	NA	NA	NA	108394869	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_108395176_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
12916	chr4	-	2262	14	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	0	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	361.184900770199	46	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATAAAGTTAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	122779653	122752871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122752928_122753178_122754011_122755726_122755871_122756205_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
12917	chr6	-	3353	16	ISM	ENSMUSG00000053470.14	ENSMUST00000167220.4	4853	26	24770	71	1223	-8	3prime_fragment	FALSE	canonical	3	336	junction_9	48.7462363219516	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTTGTCGCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	71584900	71566028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385
12918	chr1	-	2871	23	Antisense	novelGene_ENSMUSG00000103272.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	287	33	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCCGGCTCGCTTCTAG	NA	False	NA	NA	False	NA	NA	NA	86067018	85992380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_85992526_85998302_85998347_85999333_85999410_85999548_85999715_86003516_86003725_86005074_86005219_86006286_86006514_86009755_86009819_86010867_86010996_86012901_86012991_86013749_86013829_86014294_86014434_86019727_86019819_86021993_86022059_86044292_86044410_86046229_86046347_86054175_86054276_86055852_86056026_86058356_86058450_86060433_86060522_86061358_86061507_86064684_86064838_86066800
12919	chr7	-	2950	11	NIC	ENSMUSG00000030726.17	novel	3069	12	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_10	178.454924280615	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	99770709	99731317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99770570
12920	chr11	+	2318	12	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCTGCGTCCCGGCAGC	NA	False	NA	NA	False	NA	NA	NA	106672375	106679320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296_106673522_106674788_106674857_106675195_106675350_106675704_106675879_106675961_106676118_106676215_106676363_106676892_106676959_106677051_106677189_106677276_106677371_106677734_106677899_106679096
12922	chr11	-	3075	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	-15	698	-15	265	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCCAAACCCCACACTGCA	NA	False	NA	NA	False	NA	NA	NA	88755427	88722315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
12923	chr16	-	2272	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	71	-656	45	642	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCAATATTGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	22084605	22064555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
12924	chrX	-	3863	1	Antisense	novelGene_ENSMUSG00000045427.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	115	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATCATGCGTTTAGGGAA	NA	False	NA	NA	False	NA	NA	NA	133507785	133503922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_133503900_133507800
12925	chr7	-	3469	7	FSM	ENSMUSG00000030641.11	ENSMUST00000208356.2	840	7	-9	-2620	1	-4	multi-exon	FALSE	canonical	3	86	junction_4	58.4648517392193	276	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATCTTTTTTGTTATA	NA	False	NA	NA	False	NA	NA	NA	92523454	92506736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92517319_92517407_92521969_92522053_92523348
12926	chr16	+	3213	30	NNC	ENSMUSG00000038084.17	novel	3153	29	NA	NA	22	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	101.052558110097	86	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTCATGTACGTGTGT	NA	False	NA	NA	False	NA	NA	NA	29398231	29470688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467804_29470579
12927	chr10	+	3009	10	NIC	ENSMUSG00000019970.16	novel	2602	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	251	junction_1	223.643565622721	1	94	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCATAAATTGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	21854570	21875791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21873002_21873240_21873337_21873796_21874149_21874558
12929	chr2	-	2121	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	42	380	-8	-380	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCATGTATGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	154916375	154901609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
12930	chr16	-	2992	19	NIC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	-11	-3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_10	73.6442273516548	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACACTTTGTGGTTTTAGT	1983	False	NA	NA	False	NA	NA	NA	15964679	15707090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
12931	chr11	+	3167	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	21	6	21	-6	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	895	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAAGTTTGTAATTGTTT	NA	False	NA	NA	False	NA	NA	NA	83832908	83853908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
12932	chr8	-	3821	17	NIC	ENSMUSG00000052488.8	novel	3713	18	NA	NA	12	4	intron_retention	FALSE	canonical	3	101	junction_13	121.604892993662	1	106	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCCTCTAGCTGTGGAT	NA	False	NA	NA	False	NA	NA	NA	73228993	73214328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73224072_73224714_73224900_73228455_73228630_73228901
12935	chr2	+	4626	13	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-18	-15	intron_retention	FALSE	canonical	0	0	junction_3	169.664108526884	2	136	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCGTGGGAAGCCAGATA	NA	False	NA	NA	False	NA	NA	NA	174257625	174269280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174257750_174261819_174261939_174262116_174262525_174262613_174264468_174264844_174264998_174265168_174265300_174265775_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
12936	chr2	-	4399	26	FSM	ENSMUSG00000027291.16	ENSMUST00000129857.8	4055	26	6	-350	-6	0	multi-exon	FALSE	canonical	0	0	junction_23	82.3630402547162	222	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCTTGAGCCTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	120183596	120146941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159197_120163870_120164001_120168946_120169068_120169161_120169283_120169799_120169984_120172464_120172558_120173673_120173773_120174605_120174701_120176098_120176142_120176808_120176874_120179566_120179637_120180644_120180711_120183395
12937	chr2	+	4512	17	FSM	ENSMUSG00000039463.15	ENSMUST00000047815.13	4521	17	9	0	0	0	multi-exon	FALSE	non_canonical	2	49	junction_9	20.9574531790005	184	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTGTGTCACGTGTT	NA	False	NA	NA	False	NA	NA	NA	167263640	167318920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
12938	chr9	-	4719	7	NIC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	9	-3	intron_retention	FALSE	canonical	3	1324	junction_1	70.8247053568802	13	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTAAGGTATCCTGTGTA	NA	False	NA	NA	False	NA	NA	NA	70328820	70314976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_70316673_70317402_70317544_70317936_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
12939	chrX	-	3062	9	NNC	ENSMUSG00000031232.18	novel	4115	11	NA	NA	19352	-655	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.677703589226	11	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATCCCAAAGACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	105036034	105012344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105014728_105015041_105015086_105017790_105017884_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003
12940	chr15	-	3157	20	NIC	ENSMUSG00000034022.9	novel	4410	37	NA	NA	97	0	intron_retention	FALSE	canonical	2	11	junction_6	169.857019879121	1	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTCAGACGAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76485629	76480016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480108_76480208_76480348_76480419_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603
12941	chr1	+	2399	10	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	255.298711510194	1599	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTATCGATTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	4878051	4916950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4915971_4916060
12944	chr7	+	3303	2	Intergenic	novelGene_2952	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	52	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCGGCTGTATATTGTTC	NA	False	NA	NA	False	NA	NA	NA	42915299	42918674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42917821_42917892
12945	chrX	+	3563	21	NIC	ENSMUSG00000031262.13	novel	3085	22	NA	NA	20	0	intron_retention	FALSE	canonical	3	156	junction_7	44.2429655425583	111	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	NA	False	NA	NA	NA	133208923	133263385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
12947	chr9	+	2377	24	FSM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	417	6	30	0	multi-exon	FALSE	canonical	3	468	junction_2	39.8133167299073	1	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGTCTCTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	108385321	108393134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
12948	chr17	-	2940	18	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	229	2	intron_retention	FALSE	canonical	0	0	junction_6	223.069480385786	2	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGCCTGTGGGGTGCTTC	NA	False	NA	NA	False	NA	NA	NA	36274935	36267708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270306_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808
12949	chr5	-	2669	20	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	-23	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	102.267992951223	93	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGGACTGGCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	30360011	30324428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347788_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
12950	chr9	-	3649	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	-20	5	4	-3	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	740	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGCACCTTGTGTTCCT	8719	False	NA	NA	False	NA	NA	NA	31123107	31060857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
12952	chr10	-	3556	21	NNC	ENSMUSG00000037012.19	novel	3851	22	NA	NA	-603	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.313951143893	1	96	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62194744	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105520_62105623_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62188836_62188885_62194114_62194210_62194726
12953	chr14	+	2418	3	ISM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	82	12	-15	-12	intron_retention	FALSE	canonical	3	8735	junction_1	796	5	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAAGTGGACCTATGTT	NA	False	NA	NA	False	NA	NA	NA	4198710	4201861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_4198738_4199235_4199418_4199652
12954	chr10	+	1770	7	NNC	ENSMUSG00000006728.13	novel	2038	7	NA	NA	-30	-21	intron_retention	FALSE	non_canonical	0	0	junction_4	2085.70707435153	72	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAAGAGTATGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	126899441	126903145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900590_126900703_126900872_126901023_126901167_126901585_126901873_126901969_126902106_126902797
12955	chr1	-	4149	13	ISM	ENSMUSG00000094410.9	ENSMUST00000179598.4	10156	17	5222	4543	5222	-4543	intron_retention	FALSE	canonical	3	293	junction_10	43.900376485351	1	94	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGCTTGATACCGTC	NA	False	NA	NA	False	NA	NA	NA	133583834	133552220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710
12956	chr14	+	4133	11	Antisense	novelGene_ENSMUSG00000022003.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAACGGCGGGCGCGGCC	NA	False	NA	NA	False	NA	NA	NA	75997565	76024448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_76000131_76000768_76000850_76004342_76004484_76006257_76006378_76006999_76007102_76007610_76007697_76008878_76008973_76012433_76012582_76013550_76014132_76014435_76014567_76024364
12957	chr5	+	2167	14	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	5	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	715.629751218046	6	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGTTTGTTCACTGTGA	NA	False	NA	NA	False	NA	NA	NA	45650720	45670014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222_45669542_45669617
12959	chr13	+	2179	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	70	2054	-1	-3	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	1	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTCTTGGTATTGAGTG	NA	False	NA	NA	False	NA	NA	NA	3588132	3615817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
12960	chr14	+	1928	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	24	2791	24	1269	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	56	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGGCAGGGTGCACG	NA	False	NA	NA	False	NA	NA	NA	63359934	63380581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
12962	chr2	+	3551	19	FSM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	1	-373	1	71	multi-exon	FALSE	canonical	3	131	junction_1	21.8867032185704	452	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACTGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132658061	132686188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
12963	chr13	-	3199	14	NIC	ENSMUSG00000034617.8	novel	2728	14	NA	NA	36	82	combination_of_known_junctions	FALSE	canonical	1	5	junction_13	123.688911166532	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGCTATTGTGTGCGT	NA	False	NA	NA	False	NA	NA	NA	68730177	68709399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68727661_68727816_68728669_68728835_68729739
12964	chr2	-	3206	15	NNC	ENSMUSG00000026761.13	novel	1477	14	NA	NA	0	-880	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	186.31568832035	61	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATACATTAGGTAACGTCT	NA	False	NA	NA	False	NA	NA	NA	48839253	48793715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800255_48802573_48802661_48807176_48807351_48811725_48811833_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
12965	chr19	-	2652	8	NIC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	9	intron_retention	FALSE	canonical	3	2610	junction_7	205.571676759505	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTCATGAGATTGTGAC	NA	False	NA	NA	False	NA	NA	NA	8691236	8684941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8690268_8690705
12966	chr5	+	3865	16	NIC	ENSMUSG00000029106.15	novel	4007	16	NA	NA	-19	2	combination_of_known_junctions	FALSE	canonical	3	50	junction_12	159.558752676108	315	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTAAGGTTGGGG	NA	False	NA	NA	False	NA	NA	NA	34731187	34789640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34778175_34778263_34782622_34782780_34785758_34785858_34787813
12968	chr9	-	3646	8	NNC	ENSMUSG00000036986.17	novel	4343	8	NA	NA	2	101	intron_retention	FALSE	non_canonical	0	0	junction_7	133.985530744852	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTAGACCTCCCTTCTAA	2279	False	NA	NA	False	NA	NA	NA	58156941	58126932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58155510_58156606
12969	chrX	-	4217	7	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	19	0	intron_retention	FALSE	canonical	3	18	junction_4	109.593820790935	3	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	NA	False	NA	NA	NA	12539888	12521117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_12524264_12528888_12529069_12530738_12530889_12532471_12532634_12535765_12535886_12539264_12539400_12539564
12970	chr7	+	3323	10	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	21	-248	intron_retention	FALSE	canonical	0	0	junction_8	289.227323129134	1	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868022	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825_103883373_103883561
12971	chr11	+	1892	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1425.13309250784	7	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940625	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949177_22950903_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
12973	chr16	+	3049	7	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	905	1041	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	211.853264207931	51	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCTAATAAAAAAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	48131744	48141127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139290_48139359
12974	chrUn_JH584304v1	-	2368	6	Intergenic	novelGene_4648	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_1	328.129608539065	7	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACCATAGCTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	59707	52670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53770_54335_54480_54720_54868_55111_55702_58563_58836_59591
12975	chr16	-	3314	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	454.87738732542	1	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAACTGTATCATTGTAC	8113	False	NA	NA	False	NA	NA	NA	4867724	4831771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832637_4832697_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839119_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867672
12976	chr3	-	2245	8	Antisense	novelGene_ENSMUSG00000039756.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCAGCCAGCGCGGCTTCC	NA	False	NA	NA	False	NA	NA	NA	122078904	122068048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_122068126_122068844_122069432_122069587_122070460_122072394_122072532_122074374_122074472_122075976_122076140_122078039_122078151_122078703
12977	chr5	-	4386	11	Antisense	novelGene_ENSMUSG00000051674.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTAGTCAAGCAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	73718107	73649964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_73650418_73668226_73668297_73668467_73668508_73677456_73677572_73679993_73680085_73688843_73688924_73691953_73692041_73701389_73701497_73712699_73712804_73714593_73714700_73714974
12978	chr8	-	2278	6	NIC	ENSMUSG00000003813.16	novel	2074	9	NA	NA	-6	-693	intron_retention	FALSE	canonical	3	805	junction_1	232.450941060689	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTTGATTCTCCTGCTTC	NA	False	NA	NA	False	NA	NA	NA	85567276	85562941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85564220_85564317_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
12980	chr6	-	1818	3	FSM	ENSMUSG00000030057.16	ENSMUST00000134851.3	985	3	84	-917	47	-1	multi-exon	FALSE	canonical	3	10734	junction_2	536.5	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGATGACAGTTTGGACT	NA	False	NA	NA	False	NA	NA	NA	87827957	87820064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822776_87827885
12981	chr10	-	2624	21	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-14	-961	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	358.044117393374	2	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCATGGTCACTGGGACAA	NA	False	NA	NA	False	NA	NA	NA	77845584	77823741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826133_77826562_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835791_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
12982	chr2	+	3213	20	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	12	junction_13	206.433935023014	2	30	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGTGTTCTTAGTCTGTT	668	False	NA	NA	False	NA	NA	NA	31462837	31507525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502114_31502248_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
12983	chr10	+	3199	2	NIC	ENSMUSG00000073427.5	novel	3330	4	NA	NA	3	3	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	0	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTTTATGTTGTCATC	NA	False	NA	NA	False	NA	NA	NA	82190095	82215473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_82190216_82212394
12984	chr9	+	2735	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	28	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	350.680482805086	1	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5540	False	NA	NA	False	NA	NA	NA	35122478	35128306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126858_35127010_35127110_35127233_35127457_35127613
12985	chr12	-	2575	10	NNC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	621.780239848989	4	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860063	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832011_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
12986	chr7	-	2909	12	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	72	558	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	380.26413177863	2	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTGACATTTAAGTACAT	NA	False	NA	NA	False	NA	NA	NA	132724823	132588733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132604775_132604867_132627441_132627602_132683485_132683590_132724715
12987	chr11	-	1654	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	4230.56229005082	9	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563141	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69559989_69560991_69561099_69561440_69561574_69561753_69561803_69563104
12988	chr12	+	4314	15	FSM	ENSMUSG00000017843.15	ENSMUST00000221074.2	1971	15	-142	-2201	-21	-1	multi-exon	FALSE	canonical	3	61	junction_14	373.202494687289	137	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCGCTCTATGAAACTAAAT	4899	False	NA	NA	False	NA	NA	NA	110452150	110549495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110541178_110541296_110544534_110544603_110546834
12989	chr17	+	3025	14	Antisense	novelGene_ENSMUSG00000084632.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCGCGGCTGAGACTGC	NA	False	NA	NA	False	NA	NA	NA	29190118	29226907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_29191651_29192018_29192116_29193257_29193350_29193517_29193646_29194793_29194910_29196512_29196576_29198176_29198282_29201007_29201160_29203049_29203173_29207147_29207234_29210269_29210395_29211390_29211441_29218982_29219119_29226687
12990	chr12	-	2923	7	NNC	ENSMUSG00000044573.17	novel	3066	6	NA	NA	-2	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	538.920113642912	62	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGCATGAAGATGGTTCT	NA	False	NA	NA	False	NA	NA	NA	30961564	30943339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_30945511_30945632_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
12991	chr18	+	3192	18	NIC	ENSMUSG00000003779.17	novel	3107	19	NA	NA	2	-7	intron_retention	FALSE	canonical	3	116	junction_1	238.897988972172	1	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTATTTGGATTCCAA	6277	False	NA	NA	False	NA	NA	NA	34758087	34765850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758317_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
12993	chr11	-	3463	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	86	-139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.421985581654	1	106	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	88755326	88721756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88721933_88722002_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
12994	chr12	-	3534	21	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	82	-396	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	149.192325539888	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAATCTAGTAAAAGC	2760	False	NA	NA	False	NA	NA	NA	59058721	59005564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006426_59006522_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
12995	chr1	-	2606	12	NNC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	401.425826541935	1511	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGTGTTTATTATGTG	NA	False	NA	NA	False	NA	NA	NA	65225631	65197780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148_65218242_65218401_65218572_65220786_65220858_65225463
12996	chrX	+	2066	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	87	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1479.58428283082	3	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTTCATTTTCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	100473247	100492188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480922_100485157_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491307
12997	chr2	-	7085	5	Antisense	novelGene_ENSMUSG00000078875.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	257	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTGAGTTACAGAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	176709781	176692752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_176692839_176696292_176696348_176701472_176701602_176701811_176701870_176703024
12999	chr14	+	2091	11	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	-29	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	634.987598304093	1	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTCTGCATAGGCTTC	8985	False	NA	NA	False	NA	NA	NA	55777816	55786396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785571_55785800_55786213_55786288
13000	chr4	+	2446	17	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_8	239.856589640039	1491	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTGTGTTCGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	124923809	124949173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124938292_124938394_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
13001	chr12	-	3725	21	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	70	-404	at_least_one_novel_splicesite	TRUE	canonical	1	4	junction_16	198.419473590674	1	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGTTATTTTAAAATCTA	2748	False	NA	NA	False	NA	NA	NA	59058733	59005572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048095_59048186_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
13002	chr5	+	1628	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1518.20979432746	2	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	725	False	NA	NA	False	NA	NA	NA	77099592	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099687_77107196_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112412_77114221_77114253_77114494
13004	chr19	-	3601	6	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1411	4	NA	NA	-11	1	multi-exon	FALSE	canonical	3	27	junction_4	135.241413775515	39	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGGTATGTGTGCTTTGA	7803	False	NA	NA	False	NA	NA	NA	4861624	4835183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4852578_4854044_4861199
13005	chr10	-	5093	20	Antisense	novelGene_ENSMUSG00000069601.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTCAGACCGAAACAT	NA	False	NA	NA	False	NA	NA	NA	69861201	69761759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_69762022_69763524_69763647_69768221_69768324_69786778_69786887_69791753_69791980_69794746_69794901_69809549_69809767_69811878_69812083_69813539_69813637_69814297_69814528_69815145_69815272_69816099_69816223_69817943_69818028_69830201_69830275_69833922_69834057_69835184_69835328_69837751_69838430_69840437_69840820_69851395_69851481_69859658
13006	chr10	+	2638	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	-25	0	-14	0	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	1592	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516063	61529076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
13007	chr4	-	2343	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.867196102678	5	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726988	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147696554_147696793_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
13008	chrX	+	4074	9	FSM	ENSMUSG00000025626.17	ENSMUST00000154864.4	3057	9	-39	-978	-10	0	multi-exon	FALSE	canonical	2	8	junction_1	81.7778049045094	6	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGTCTGCTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	52001132	52045820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_52001314_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
13009	chr12	-	3329	18	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	1947	-408	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	160.302935537277	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTTAGTTATTTTAAAA	9407	False	NA	NA	False	NA	NA	NA	59052074	59005576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045272_59048677_59048842_59051275_59051363_59052044
13010	chr2	+	2928	21	NNC	ENSMUSG00000002455.15	novel	3054	21	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	98.1260796118952	7	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	2552	False	NA	NA	False	NA	NA	NA	181243169	181297454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296684_181297211
13012	chr18	-	2628	21	Antisense	novelGene_ENSMUSG00000024271.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCACTTCCGCCCCAGAGC	NA	False	NA	NA	False	NA	NA	NA	24771793	24737019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_24737190_24739912_24739993_24742686_24742754_24744965_24745125_24745502_24745582_24747471_24747542_24748948_24749083_24750456_24750552_24752132_24752234_24752436_24752571_24755135_24755290_24755530_24755725_24758568_24758635_24759180_24759274_24759443_24759507_24760055_24760123_24764413_24764608_24765814_24765936_24767393_24767528_24767955_24768064_24771448
13013	chr8	-	2742	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	1171	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2009.41257308918	3	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACACTAGAAATGAGTTC	NA	False	NA	NA	False	NA	NA	NA	43758802	43748112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753668_43753743_43757512_43757597_43757679
13014	chr4	+	3003	25	NNC	ENSMUSG00000017264.17	novel	1188	9	NA	NA	279	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.061484597322	4	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	148643197	148666858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643501_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657487_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
13015	chr17	-	2644	12	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	-305	-1	intron_retention	FALSE	canonical	3	1453	junction_5	300.679313533168	64	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTCTGTGCATCCTTC	NA	False	NA	NA	False	NA	NA	NA	45904871	45896129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257
13018	chr18	-	3400	13	NNC	ENSMUSG00000041891.17	novel	3581	14	NA	NA	1	-91	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	365.293717438447	4	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTGTTTTCCCTTTCTG	NA	False	NA	NA	False	NA	NA	NA	66135691	66113918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126277_66126649_66126709_66127855_66127980_66129752_66129865_66131445_66131554_66131636_66131792_66135444
13019	chr13	+	3022	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222089.2	478	4	-5	-2539	-5	2115	multi-exon	FALSE	canonical	3	66	junction_3	212.90112467737	42	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCTCTATCTCATAAAAA	NA	False	NA	NA	False	NA	NA	NA	62245556	62261976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259238
13020	chr2	+	2844	22	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	8	-4	intron_retention	FALSE	canonical	3	154	junction_14	57.850616915907	10	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTGTTGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	130266266	130285650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282949_130283084_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
13021	chr7	-	2733	2	ISM	ENSMUSG00000074129.15	ENSMUST00000210967.2	658	8	-16	0	0	0	intron_retention	FALSE	canonical	3	17594	junction_1	0	102	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44775457_44775538
13024	chr9	+	3788	10	FSM	ENSMUSG00000032329.5	ENSMUST00000034879.5	3778	10	-10	0	-10	0	multi-exon	FALSE	canonical	3	83	junction_9	43.8482230730809	304	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTGACCAGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	56325882	56404220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401816
13025	chr7	-	2136	18	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	634.277678158692	3	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	33929717	33901581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915431_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928821_33929411
13026	chr12	-	1807	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	303	0	-3	0	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	4122	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	21467134	21440329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
13027	chrX	+	4229	9	ISM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	-68	13	4	-8	intron_retention	FALSE	canonical	3	227	junction_1	32.0848484490733	5	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTTGGCATTGAGTC	NA	False	NA	NA	False	NA	NA	NA	7628828	7641428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687
13029	chr1	+	2648	22	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	236.800393377745	24	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3046	False	NA	NA	False	NA	NA	NA	171910377	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171941001_171949610
13030	chr17	-	3737	11	NIC	ENSMUSG00000024037.14	novel	4154	11	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	142.866686109814	574	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTACCACGTTGTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	31731252	31713300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722702_31728742_31728887_31729551_31729621_31731140
13032	chr7	+	5057	16	FSM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	-1	6068	-1	102	multi-exon	FALSE	canonical	3	100	junction_2	14.120749114532	156	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTGCTAACAGAATCTT	NA	False	NA	NA	False	NA	NA	NA	97229102	97335917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019_97311789_97313766_97313974_97318975_97319081_97320009_97320090_97323787_97323843_97325362_97325473_97326551_97326620_97328141_97328350_97329825_97330050_97330905_97331095_97334631
13033	chr12	-	2276	9	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	653.810358112351	22	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860103	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827142_108832140_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
13034	chr8	-	2329	17	NIC	ENSMUSG00000031948.15	novel	2189	16	NA	NA	-26	-2	combination_of_known_junctions	FALSE	canonical	2	3	junction_15	620.454114817325	491	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATGCAGTGTTACTTT	NA	False	NA	NA	False	NA	NA	NA	112737981	112720076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112736853_112736913_112737841
13035	chr11	+	2456	12	ISM	ENSMUSG00000017119.21	ENSMUST00000107213.8	4339	23	11715	6339	-1460	396	internal_fragment	FALSE	canonical	3	94	junction_9	42.9185274677499	2	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTTATAAAAAATCTTT	6953	False	NA	NA	False	NA	NA	NA	101455398	101466438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824
13036	chr3	-	3161	19	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	24	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	307.250797344996	2	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAACAAAATGCTGTT	NA	False	NA	NA	False	NA	NA	NA	104725593	104702177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702348_104703024_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
13037	chr6	+	2941	22	NNC	ENSMUSG00000030088.16	novel	653	5	NA	NA	7941	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	48.3352802798111	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	90535770	90576151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90535903_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
13038	chr4	+	3720	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	-4	2	-4	-2	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	1290	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCATGTCTGTCTACACA	NA	False	NA	NA	False	NA	NA	NA	62278959	62310004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
13039	chr4	-	4319	15	ISM	ENSMUSG00000028484.17	ENSMUST00000030207.15	3251	16	499	-1221	218	1221	3prime_fragment	FALSE	canonical	3	958	junction_5	357.903105117937	440	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGTTTATCTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	83404197	83372695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_83375317_83376311_83376424_83378080_83378295_83378390_83378493_83378695_83378767_83379422_83379479_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953
13040	chr8	+	3847	22	NNC	ENSMUSG00000018796.14	novel	3429	21	NA	NA	2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	120.452849235246	8	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGGAGAATGTCTTTC	9509	False	NA	NA	False	NA	NA	NA	46944004	46989079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46944199_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376_46988383_46988423
13042	chr11	-	3481	11	NIC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	6	0	intron_retention	FALSE	canonical	3	617	junction_6	44.1039680754465	17	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTGTTCTCTCA	NA	False	NA	NA	False	NA	NA	NA	59730658	59708620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
13043	chr8	+	2214	6	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCTGTTCCGGCCACAC	NA	False	NA	NA	False	NA	NA	NA	43748109	43760032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43749171_43749259_43749573_43753663_43753745_43757514_43757600_43758462_43758975_43759870
13044	chr19	-	2006	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	906.677411759046	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3762	False	NA	NA	False	NA	NA	NA	7017336	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012105_7012913_7013074_7017247
13045	chr17	-	2685	15	Fusion	ENSMUSG00000079471.5_ENSMUSG00000023942.16	novel	2092	14	NA	NA	45	0	multi-exon	FALSE	canonical	0	0	junction_13	844.0962350832	61	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45912847	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45912074_45912612_45912708
13046	chr11	-	2576	11	Antisense	novelGene_ENSMUSG00000087342.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCGGCACGCGTGCCCGC	7623	False	NA	NA	False	NA	NA	NA	55391700	55360562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_55360626_55376449_55376563_55378302_55378385_55379842_55380017_55382787_55382881_55386095_55386277_55386968_55387070_55388474_55388589_55388738_55388868_55389383_55389492_55390282
13047	chrX	+	3807	7	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-4	0	intron_retention	FALSE	canonical	3	736	junction_5	45.6167610521493	1	114	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6202	False	NA	NA	False	NA	NA	NA	73348857	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73354141_73354243
13048	chrX	+	2955	2	Antisense	novelGene_ENSMUSG00000034403.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	354	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCGCTAAAGAGCACTAGG	NA	False	NA	NA	False	NA	NA	NA	98509343	98514314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_98512205_98514220
13049	chrX	-	3640	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	78	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.431609428206	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800240	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767564_149768501_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786584_149787240_149787282_149797016_149797086_149800196
13050	chr4	+	2969	12	NNC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	210.495558540529	2	17	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9715	False	NA	NA	False	NA	NA	NA	155648299	155675454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673820
13051	chr7	+	5195	6	FSM	ENSMUSG00000108621.2	ENSMUST00000188038.3	16021	6	2	10824	2	4555	multi-exon	FALSE	canonical	3	26	junction_1	12.1819538662728	102	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGGAGGTTCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	39201926	39219189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_39202036_39202651_39202757_39213125_39213253_39213425_39213487_39214290_39214506_39214611
13054	chr9	+	2840	6	NNC	ENSMUSG00000032092.6	novel	3107	6	NA	NA	-89	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_5	211.37171050072	18	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	NA	False	NA	NA	NA	44953904	44965313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963260
13055	chr15	-	5024	26	NNC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	7	-2	intron_retention	FALSE	non_canonical	0	0	junction_25	41.14333967971	165	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTCTGCCTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	54935541	54878528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934842_54935238
13056	chr17	+	2648	7	FSM	ENSMUSG00000023902.19	ENSMUST00000120967.8	2609	7	-42	3	-42	-3	multi-exon	FALSE	canonical	3	46	junction_6	80.8484521943508	3	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCCTGATTTTTTTACT	837	False	NA	NA	False	NA	NA	NA	23819787	23829990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
13057	chr17	-	2064	7	FSM	ENSMUSG00000024026.14	ENSMUST00000024823.14	2024	7	-40	0	7	0	multi-exon	FALSE	canonical	3	9	junction_4	1513.88137103128	5826	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	30831626	30811834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822360_30822492_30822993_30823077_30831441
13059	chr5	+	2429	14	Antisense	novelGene_ENSMUSG00000028953.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	11	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACAGAGCTGCTCCTTGA	NA	False	NA	NA	False	NA	NA	NA	24770340	24782369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_24771000_24771474_24771632_24772183_24772308_24772490_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774167_24776142_24776247_24777002_24777100_24778423_24778774_24779163_24779378_24781516_24781726_24782344
13060	chr17	-	2405	14	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_12	517.085002111146	221	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5767	False	NA	NA	False	NA	NA	NA	33904366	33865212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33896241_33896415_33904240
13061	chr4	-	4701	10	FSM	ENSMUSG00000053841.16	ENSMUST00000084264.12	4847	10	142	4	-23	-4	multi-exon	FALSE	canonical	3	289	junction_1	24.9225962224873	227	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACCTGTATCTCAGCCAA	8262	False	NA	NA	False	NA	NA	NA	129534456	129519879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048
13062	chr5	-	3761	6	FSM	ENSMUSG00000058291.15	ENSMUST00000110905.9	4749	6	24	964	1	368	multi-exon	FALSE	canonical	3	54	junction_4	14.2632394637403	229	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTGTATTCAGCAG	1755	False	NA	NA	False	NA	NA	NA	138617999	138602877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614828_138615316_138615430_138617870
13063	chr5	-	2646	18	NIC	ENSMUSG00000036693.13	novel	2702	18	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_5	158.532893119037	1188	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	34817461	34795879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798802_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
13064	chr6	-	3079	20	NNC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	269.604871438928	1	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGACTGGTTTCAGTTCT	7903	False	NA	NA	False	NA	NA	NA	124806400	124791987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795512_124795630_124796335_124796443_124796973_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
13065	chr11	-	3015	19	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	11	-27	intron_retention	FALSE	non_canonical	0	0	junction_9	191.905720486794	1	53	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTATTTGAATAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	106146611	106139994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106142162_106143028_106143165_106143253_106143404_106143491_106143556_106143715_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
13066	chr6	+	3598	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	176.881080578638	86	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACAAAAAGTGCCCCTCTC	-7	True	NA	NA	False	NA	NA	NA	30048007	30153453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
13067	chr2	+	2557	6	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-156	36	intron_retention	FALSE	canonical	3	2205	junction_3	156.587355811381	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTTGAAGAGATGGCCAC	NA	False	NA	NA	False	NA	NA	NA	130116594	130120939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116644_130116951_130117067_130117582_130118779_130118951_130119891_130120075_130120211_130120816
13068	chr7	+	3035	4	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	25	212	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	400.600660120386	18	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGCATGTCTGTGAGGG	296	False	NA	NA	False	NA	NA	NA	3339124	3348077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3339318_3341727_3341816_3345237_3346973_3347058
13069	chr8	-	2037	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	22	-316	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	187.671567596028	100	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCTCATCAAAGAGCCGT	NA	False	NA	NA	False	NA	NA	NA	96614998	96591077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
13071	chr16	+	3982	6	FSM	ENSMUSG00000022529.12	ENSMUST00000161630.8	3856	6	-132	6	7	0	multi-exon	FALSE	canonical	2	13	junction_1	76.2532622252976	120	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAATATGTATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	3561963	3568648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_3563377_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
13073	chr8	+	2967	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	30	4	20	-4	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	51	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCATGACCCTTGTCC	7230	False	NA	NA	False	NA	NA	NA	69661719	69683184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
13074	chr7	-	3701	5	NNC	ENSMUSG00000064307.14	novel	872	5	NA	NA	6239	7030	intron_retention	FALSE	non_canonical	0	0	junction_1	0	53	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTCAGGAGCCTTTCCG	NA	False	NA	NA	False	NA	NA	NA	101563742	101555160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101555246_101558868_101559015_101559233_101559311_101559623_101559751_101560476
13075	chrX	-	3123	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	46	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	59	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTTTTCATTTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	149800272	149766127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766796_149768504_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
13076	chr10	+	5299	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	3	5	0	-3	multi-exon	FALSE	canonical	3	294	junction_10	195.138687701892	1	189	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAATAGCTGGTCTCTGTT	2793	False	NA	NA	False	NA	NA	NA	20188217	20218242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
13077	chr11	+	1680	13	ISM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	2746	444	-2359	185	3prime_fragment	FALSE	canonical	3	4673	junction_1	349.25440425124	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAACTTGTCATTTTAA	NA	False	NA	NA	False	NA	NA	NA	22943264	22953336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
13078	chr8	-	1046	4	NIC	ENSMUSG00000003809.15	novel	2167	11	NA	NA	44	-91	intron_retention	FALSE	canonical	3	233	junction_1	22.1259023670348	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGACCAAGACCTGGTGAG	NA	False	NA	NA	False	NA	NA	NA	85620502	85617656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85617772_85619030_85619202_85619459_85619794_85620076
13081	chr1	+	2294	10	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-3	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	255.298711510194	18	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTATCGATTGCTTTATA	NA	False	NA	NA	False	NA	NA	NA	4878115	4916952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4915933_4916065
13082	chr18	-	4169	19	NNC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	49.9913572777249	1	75	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGAGTTTTTTTCCAT	-28	True	NA	NA	False	NA	NA	NA	6135975	6025216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049386_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
13084	chr6	-	2369	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	4	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	833.564967807282	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCTCATGACTTTGTT	NA	False	NA	NA	False	NA	NA	NA	148847937	148822555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823863_148824139_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
13085	chr7	-	3986	19	NIC	ENSMUSG00000054662.9	novel	3088	23	NA	NA	-15	-12	intron_retention	FALSE	canonical	3	117	junction_14	21.2260031535978	44	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTATTGATTTCTGAG	NA	False	NA	NA	False	NA	NA	NA	140697701	140681149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140683148_140683904_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
13086	chr7	+	5292	18	NIC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-15	-17	combination_of_known_junctions	FALSE	canonical	3	56	junction_15	49.6653158513657	177	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGGCTTATGTTTAGA	NA	False	NA	NA	False	NA	NA	NA	140808681	140842638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841200_140841456_140841688_140841818_140842321
13087	chrX	+	3176	27	Antisense	novelGene_ENSMUSG00000031139.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	59101968	59223765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_59102051_59105206_59105314_59107439_59107582_59108452_59108520_59109959_59110035_59112513_59112608_59122540_59122762_59129759_59129856_59152817_59152911_59154779_59154849_59155116_59155231_59155926_59155995_59158738_59158817_59160460_59160510_59166300_59166471_59168474_59168667_59170067_59170265_59172380_59172498_59174659_59174770_59175401_59175538_59178967_59179120_59180740_59180854_59181611_59181733_59198258_59198350_59200961_59201076_59205584_59205656_59223528
13088	chr12	+	2267	16	NNC	ENSMUSG00000112449.2	novel	3646	16	NA	NA	-13	-1233	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	244.934240608009	1648	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2607	False	NA	NA	False	NA	NA	NA	55202141	55235125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55202473_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
13089	chr16	-	2973	1	Antisense	novelGene_ENSMUSG00000053062.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGGGTTTACTCACACC	NA	False	NA	NA	False	NA	NA	NA	84622299	84619326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_84619300_84622300
13090	chr12	-	3611	11	NIC	ENSMUSG00000020628.17	novel	3377	12	NA	NA	-4	-346	intron_retention	FALSE	canonical	3	61	junction_10	22.3123284307129	10	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTATTGCTTTGATTAT	8316	False	NA	NA	False	NA	NA	NA	28800385	28740973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28741557_28741757_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800160
13091	chr4	-	3068	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106099.8	2982	8	-34	-52	-6	3	multi-exon	FALSE	canonical	3	10	junction_1	144.172515708488	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTAATGAAGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	126954951	126941382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126943406_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
13092	chr17	+	1276	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	65	1	-1	-1	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	3164	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAAGGGCTGTGACTGGTT	NA	False	NA	NA	False	NA	NA	NA	35278075	35281066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
13093	chr6	-	2599	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43544	-255	multi-exon	TRUE	non_canonical	0	0	junction_1	0	88	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACCACTGCGCACGCGCC	NA	False	NA	NA	False	NA	NA	NA	71852238	71808323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71828861_71829742_71829849_71833892_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849908_71851300
13094	chr11	+	4703	31	NNC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	28.9553103937775	121	22	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAGTTGGGTGCCAGTT	NA	False	NA	NA	False	NA	NA	NA	87295890	87446643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390363_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356_87442467_87445753_87445806_87446309
13095	chr10	+	4557	21	NNC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	-10	-9	intron_retention	FALSE	canonical	0	0	junction_18	53.4533441423453	2	148	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCATGAACAGGGTTTATG	9137	False	NA	NA	False	NA	NA	NA	41352353	41363017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41358286_41358599_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362387_41362468_41362589_41362664_41362753
13096	chr9	-	3044	11	NIC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-14	-4	intron_retention	FALSE	canonical	3	3415	junction_6	1204.37672262461	4	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGAGATTGTGTGGCC	NA	False	NA	NA	False	NA	NA	NA	89996726	89973727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
13097	chr2	+	3250	12	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9571	24822	-173	3	internal_fragment	FALSE	canonical	3	169	junction_6	15.8979181546796	362	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGGGGTTTTGTTGTTT	4623	False	NA	NA	False	NA	NA	NA	20524428	20790513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854
13098	chr10	+	2656	17	NIC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-2	2	combination_of_known_splicesites	FALSE	canonical	3	22	junction_12	253.84047032536	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171905	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
13099	chr9	-	5601	19	NIC	ENSMUSG00000032030.17	novel	5945	20	NA	NA	44	-72	combination_of_known_junctions	FALSE	canonical	3	65	junction_18	82.5942222891865	252	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCATCTATCCAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	53581270	53525953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53581150
13100	chr2	+	1846	14	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	32	-707	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1123.77447778595	7285	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	121244395	121268461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244571_121244647_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
13101	chr2	-	5059	3	FSM	ENSMUSG00000026788.14	ENSMUST00000126442.2	487	3	20	-4592	-7	-9	multi-exon	FALSE	canonical	3	37	junction_2	3.5	140	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACAAAGTTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	33358551	33340307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_33345136_33354925_33355050_33358444
13103	chr17	+	2612	7	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	22	-2	intron_retention	FALSE	canonical	3	546	junction_5	71.9320667173009	768	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTGTATTCTTTCCTT	5644	False	NA	NA	False	NA	NA	NA	34128493	34134554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34133037_34134316
13104	chr15	-	3424	25	NNC	ENSMUSG00000022350.8	novel	4033	29	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	99.0159130729332	268	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGCCCTGCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59246041	59203845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_59204040_59211658_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
13108	chr13	+	1110	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1534	0	15	0	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	5568	False	NA	NA	False	NA	NA	NA	55469846	55473085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
13110	chr16	+	3161	16	NIC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	-14	4	combination_of_known_splicesites	TRUE	non_canonical	1	3	junction_14	224.374330082565	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	1074	False	NA	NA	False	NA	NA	NA	93629108	93672965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659392_93659528_93659604_93661847_93661906_93663262_93663427_93670124_93670283_93671646
13111	chr1	-	3425	2	Antisense	novelGene_ENSMUSG00000026349.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGCTGGGGCCACTCTT	NA	False	NA	NA	False	NA	NA	NA	127733656	127730183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127730793_127730840
13113	chrX	-	2332	13	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	61	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGCGCGACCGCCGGAAA	NA	False	NA	NA	False	NA	NA	NA	100492180	100473302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100473368_100474100_100474162_100480819_100480992_100483114_100483286_100485120_100485420_100486531_100486632_100486900_100487097_100487881_100487966_100488291_100488396_100488899_100488939_100489719_100489834_100491198_100491587_100491641
13114	chr11	-	2281	10	FSM	ENSMUSG00000018593.14	ENSMUST00000018737.13	2300	10	10	9	10	-9	multi-exon	FALSE	canonical	3	577	junction_9	66.8521493786341	2185	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACGGCTGTCCTGTCCC	3686	False	NA	NA	False	NA	NA	NA	55310896	55285334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
13116	chr12	-	2061	8	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCCGACTGCCAGCGCCC	3513	False	NA	NA	False	NA	NA	NA	24764091	24758284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24758445_24758556_24758631_24758934_24759083_24759321_24759440_24761444_24761540_24761666_24761800_24762657_24762756_24762856
13117	chr13	-	2283	10	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-10	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1167.55775493597	18	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAATTCTCATTTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	100923004	100915246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920016_100920058_100920156_100921964_100922127_100922240_100922412_100922889
13118	chr11	-	2366	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1576.44021233143	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9260	False	NA	NA	False	NA	NA	NA	106679714	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676314_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679528
13120	chr8	+	3236	15	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-14	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	424.666670003951	1	82	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTAAAGCTGTGTTTCT	8813	False	NA	NA	False	NA	NA	NA	120637538	120684290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120679976_120680018_120680085_120681527_120681673_120682936_120683003_120683321
13121	chr7	-	3633	7	Antisense	novelGene_ENSMUSG00000074887.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATGGAACTAGCAGCAA	NA	False	NA	NA	False	NA	NA	NA	42891822	42863475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_42863571_42870264_42870330_42872998_42873132_42873329_42873384_42875133_42876335_42884604_42884792_42889924
13122	chr11	-	2234	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	2	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	1748.631973223	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9656	False	NA	NA	False	NA	NA	NA	106679318	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673067_106673282_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676363_106677258_106677371_106677734_106677901_106679098
13123	chr6	-	3707	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	12	-1101	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.009293519759	1064	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGCTTAACAAATATACTT	NA	False	NA	NA	False	NA	NA	NA	81942927	81935932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_81938567_81938746_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
13124	chr8	+	3743	20	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	13	-2096	intron_retention	FALSE	canonical	2	1913	junction_1	392.999975330048	1	139	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGTGATGTCATGCGCT	NA	False	NA	NA	False	NA	NA	NA	111760560	111782200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780844_111781140_111781255_111781650
13125	chr11	+	2909	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	-249	4	-249	-4	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	87	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGACCCTGGTGCTGTAC	NA	False	NA	NA	False	NA	NA	NA	101206789	101214359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
13126	chr9	-	2687	18	NNC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	393.365436689609	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64080195	64044425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070086_64072644_64072741_64075894_64075947_64080099
13127	chr19	-	1985	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.574727405454	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3763	False	NA	NA	False	NA	NA	NA	7017335	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998380_6998501_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
13128	chr2	-	2724	2	ISM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	18899	12	18893	-12	3prime_fragment	FALSE	canonical	3	382	junction_1	0	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCATCGTATAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	168778293	168767292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168768854_168777130
13130	chr19	+	2707	14	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	439	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	317.791789229639	1	69	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	2141	False	NA	NA	False	NA	NA	NA	8886060	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890287_8892772_8892869_8892988
13131	chr16	+	3801	15	NNC	ENSMUSG00000022905.13	novel	5039	14	NA	NA	3	875	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	125.862574878723	9	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCTTTGACTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	35803726	35856376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090_35854796_35854866
13132	chr9	-	3216	11	NNC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	-9	-409	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	152.147461365611	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCAGACTGTTGGTCATT	NA	False	NA	NA	False	NA	NA	NA	75466948	75405397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75405950_75406000_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
13134	chr1	+	3554	8	NNC	ENSMUSG00000026123.12	novel	302	2	NA	NA	8616	-1	intron_retention	FALSE	canonical	3	27	junction_1	87.8121836184293	3	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCGTGTCTCATTGTGA	NA	False	NA	NA	False	NA	NA	NA	34899533	34918657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34899885_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
13135	chr18	+	2083	14	Antisense	novelGene_ENSMUSG00000065904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCACGTGGGGTGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	35070910	35087397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35071252_35073236_35073368_35073892_35073996_35074915_35075144_35076126_35076347_35079004_35079090_35079548_35079712_35080963_35081070_35081157_35081233_35082069_35082195_35084276_35084457_35085446_35085539_35085729_35085788_35087221
13136	chr12	-	2406	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	6	-2334	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	440.407200667746	4	30	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299158	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275469_13277328_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
13137	chr12	-	3359	12	FSM	ENSMUSG00000020628.17	ENSMUST00000020954.15	3377	12	19	-1	-5	0	multi-exon	FALSE	canonical	3	61	junction_11	21.61993264567	290	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTGAGGAGACATGAGC	8268	False	NA	NA	False	NA	NA	NA	28800433	28740626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800160
13138	chr7	-	1244	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	26	170	-19	-120	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGACTTCGAGAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	27749500	27741301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
13139	chr11	-	2673	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	0	-88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.147467918033	21	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758932	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11751838_11752010_11753064_11756095_11756216_11758894
13140	chr5	-	2947	7	NNC	ENSMUSG00000047881.15	novel	3241	7	NA	NA	14	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	187.099572420677	4	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTTGAATGAGCGACAT	NA	False	NA	NA	False	NA	NA	NA	64126226	64066416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_64068495_64082077_64082241_64084458_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
13142	chr7	-	3327	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	359.043207912264	1	68	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTACTGGCTGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	44198223	44182177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182246_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184438_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
13143	chr9	+	3062	14	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	19	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	93.8112166998074	3	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGTATTGAAATGGCC	NA	False	NA	NA	False	NA	NA	NA	109760886	109912239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109897931_109911973
13144	chr7	-	3894	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	23	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	118.742017275549	2	129	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTACGTTTACTTACTG	NA	False	NA	NA	False	NA	NA	NA	42155126	42122816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139547_42139622_42139701_42155033
13145	chr9	-	3883	9	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	27	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	491.982151607149	6	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAATGTGTATCTTAAG	NA	False	NA	NA	False	NA	NA	NA	96993183	96957630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96957991_96958747_96961293_96962245_96962536_96967109_96967177_96971872_96971930_96975129_96975231_96979155_96979234_96982127_96982293_96992963
13146	chr5	-	2099	5	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	6	-529	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3400.04301443379	16	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTAGTTAAATGACT	6770	False	NA	NA	False	NA	NA	NA	148989844	148984040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985724_148986536_148986593_148987189_148987251_148987397_148987562_148989709
13148	chrX	-	3099	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	78	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	214.055097521845	3	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATCCTTGTGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	149800240	149766144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766799_149768513_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149798999_149799031_149800196
13149	chr14	+	3021	20	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	128.169079810189	4	48	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGCCTCCTTTCCTAC	NA	False	NA	NA	False	NA	NA	NA	32043974	32070109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047818_32055687_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
13150	chr11	+	3330	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-4	-2	intron_retention	FALSE	non_canonical	0	0	junction_12	273.17255516973	1	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788919	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798282_74798688_74798791_74798871_74798947_74799059
13151	chr11	+	1258	2	ISM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	4322	10	-589	-10	3prime_fragment	FALSE	canonical	3	661	junction_1	0	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTGAATACTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	68940799	68942480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_68941303_68941725
13152	chr6	+	2035	2	Genic_Genomic	ENSMUSG00000037827.6	novel	1479	1	NA	NA	-31	689	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGTAGAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	128621844	128624043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_128621926_128622089
13154	chr2	+	3540	13	FSM	ENSMUSG00000033411.17	ENSMUST00000036647.13	5053	13	485	1028	0	-1	multi-exon	FALSE	canonical	3	334	junction_9	41.0940655353327	74	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATGCTCTTTCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	121786966	121843095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
13155	chr18	+	3001	12	NIC	ENSMUSG00000024442.7	novel	2394	13	NA	NA	0	-20	intron_retention	FALSE	canonical	3	315	junction_6	28.9099485293029	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGGTGGATTATCTCT	3967	False	NA	NA	False	NA	NA	NA	38383311	38395662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
13158	chr16	+	4796	9	FSM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	-19	12	-16	-12	multi-exon	FALSE	canonical	3	61	junction_1	11.3880419739304	165	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTGTTTCAATTTCCT	2470	False	NA	NA	False	NA	NA	NA	32249722	32293876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868_32289058_32290114
13159	chr3	+	2668	4	NNC	ENSMUSG00000015749.13	novel	637	4	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	725.485737665156	57	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836602	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836969_95845312_95845352_95851618_95851674_95852491
13160	chrX	+	1920	12	NNC	ENSMUSG00000031353.14	novel	1862	12	NA	NA	-10	36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	887.99570023529	3	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTGTTTTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	161543387	161561788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551987_161552786_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
13161	chr6	-	2435	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	131	-10	131	10	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	1	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTGAATCTTAATCTACA	8616	False	NA	NA	False	NA	NA	NA	145021779	144944873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
13163	chr9	+	5214	26	NIC	ENSMUSG00000042185.15	novel	5398	26	NA	NA	-25	-8	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	9.17387595294377	153	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTAATTTCTGGGCCTT	NA	False	NA	NA	False	NA	NA	NA	31297462	31332621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308295_31308434_31309015_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872_31312000_31312233_31312300_31313351_31313432_31313530_31313575_31314309_31314371_31314750_31314926_31316846_31316954_31320568_31320693_31321140_31321221_31321359_31321575_31321662_31321934_31322472_31322686_31325312_31326081_31330271_31330379_31331109_31331246_31331350
13164	chr7	+	3514	16	NNC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-51	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	99.1913078629149	2	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCAGCGAGTGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	130247908	130366508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130248161_130276331_130276436_130318509_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
13165	chr10	-	2787	16	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	10	-1354	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	174.091342563482	5	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATGTCTAGGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	62438050	62417383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434064_62434634_62434671_62437906
13166	chr17	+	4501	3	Antisense	novelGene_ENSMUSG00000038045.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGTGAAAGGAGAACAGTA	NA	False	NA	NA	False	NA	NA	NA	79192326	79202518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_79192646_79198273_79199070_79199132
13167	chr16	+	3671	17	FSM	ENSMUSG00000005899.15	ENSMUST00000232417.2	5017	17	18	1328	0	152	multi-exon	FALSE	canonical	3	228	junction_11	24.7736629306205	2	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCTGGGCTGAATCTT	NA	False	NA	NA	False	NA	NA	NA	17437244	17461363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
13168	chr5	-	3254	11	NNC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	-10	0	intron_retention	FALSE	non_canonical	0	0	junction_1	296.936777782746	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	114046776	113980496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982411_113983296_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
13169	chr13	-	4328	4	NNC	ENSMUSG00000033102.16	novel	628	5	NA	NA	366	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.64098759787715	1582	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGTTGTATTCAC	NA	False	NA	NA	False	NA	NA	NA	64345372	64340358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64341376_64341491_64344490_64344793_64344860_64345125
13170	chr2	-	2565	8	FSM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	838	5	-4	-5	multi-exon	FALSE	canonical	3	126	junction_2	23.9267589931935	586	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGAAAGGCATGTGATG	NA	False	NA	NA	False	NA	NA	NA	29677676	29666126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
13172	chr11	-	3287	5	NNC	ENSMUSG00000038615.18	novel	4596	5	NA	NA	487	-4	intron_retention	TRUE	non_canonical	0	0	junction_1	560.391994500278	1	86	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGATTCAGCTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	96718058	96708260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96710911_96711115_96711343_96712076_96712236_96712929_96713146_96718023
13174	chrX	-	3325	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3367	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	453.810515936993	2	88	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227925	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23150798_23150912_23181368_23181441_23227732
13175	chr1	-	2264	11	ISM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	17277	4	-9329	-4	3prime_fragment	FALSE	canonical	3	2308	junction_6	129.378359859754	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGATGGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	125346007	125320646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985
13176	chr18	-	884	5	ISM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	77	3653	-9	-3653	5prime_fragment	FALSE	canonical	3	266	junction_1	23.9008368054342	14	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAGGTGTGCGCCACCA	NA	False	NA	NA	False	NA	NA	NA	40352405	40340601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
13177	chr4	-	2957	6	Intergenic	novelGene_1867	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGATTCCCGCCCTGGACC	4641	False	NA	NA	False	NA	NA	NA	62309289	62278952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_62279078_62303725_62303915_62304326_62304399_62306101_62306272_62306833_62308812_62308866
13180	chr7	-	2391	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	-132	0	-132	0	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	2425	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102975	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
13181	chr10	-	4110	22	Antisense	novelGene_ENSMUSG00000036875.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	157	48	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGCCCGCCGGGAGAGCG	NA	False	NA	NA	False	NA	NA	NA	62809961	62782865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_62782947_62784962_62785144_62786513_62786696_62789960_62790117_62791098_62791225_62792708_62792928_62793829_62793948_62794672_62794835_62794950_62795147_62795988_62796220_62796826_62796879_62797197_62797314_62797389_62797501_62798172_62798282_62799579_62799809_62800678_62800871_62802193_62802283_62802375_62802582_62803429_62803520_62805552_62805738_62807622_62807770_62809029
13183	chr11	+	3581	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	-22	0	-22	0	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	349	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	23615984	23682876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
13184	chr2	-	2821	14	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	54162	5919	-4402	-201	internal_fragment	FALSE	canonical	3	274	junction_7	32.9054589812881	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCATATTCTCCAAGGTA	6689	False	NA	NA	False	NA	NA	NA	126663988	126639403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083
13186	chr11	+	2732	10	NIC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	21	-34	intron_retention	FALSE	canonical	3	2673	junction_3	107.609375882298	4	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	107370330	107388965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107386592_107388349
13187	chr16	-	2050	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAATAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45974754_45974794
13188	chr15	-	3206	15	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	17	-370	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	201.859872593008	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTACATTTTGGAACATA	NA	False	NA	NA	False	NA	NA	NA	51855126	51826005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51826094_51826456_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
13189	chr7	-	3894	6	NIC	ENSMUSG00000030788.17	novel	4032	6	NA	NA	12	-27	intron_retention	FALSE	canonical	3	12	junction_4	41.252393869932	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAGATAGTCTGAATA	NA	False	NA	NA	False	NA	NA	NA	110443639	110412764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436369_110436478_110443545
13192	chr10	+	2683	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	332.713599211613	21	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171905	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220977_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240681_21243622_21243686_21244187
13193	chr4	+	2500	10	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	277	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	268.270086864288	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTCAGATGATCAGATTA	5325	False	NA	NA	False	NA	NA	NA	89055635	89099311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89056834_89056889_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704_89097800_89097866
13194	chr12	+	2631	15	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	91.3006079958297	48	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	85157631	85180862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166101_85168850_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
13196	chr8	+	3933	19	NNC	ENSMUSG00000041949.7	novel	4409	18	NA	NA	16	-580	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_17	33.9796598563114	289	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGCTGTCACCGAGC	1129	False	NA	NA	False	NA	NA	NA	107409715	107577491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107409888_107415283_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925_107473984_107508325_107508467_107533672_107533825_107545087_107545202_107570297_107570418_107576810
13197	chr15	-	4805	18	NNC	ENSMUSG00000022246.15	novel	4909	18	NA	NA	22532	-13	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_17	45.3846307232124	173	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCCCTTTTATGGATTT	NA	False	NA	NA	False	NA	NA	NA	10691094	10569067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10690990
13198	chr7	-	2038	19	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	617.443847099465	125	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	33929679	33901581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33911934_33911998_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
13199	chr8	-	2832	19	NNC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	49.5133415117009	3	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGATGGCACGTTTGC	NA	False	NA	NA	False	NA	NA	NA	84467809	84449998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454805_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
13200	chr3	-	3153	10	NNC	ENSMUSG00000000001.5	novel	3262	9	NA	NA	30	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	143.362787671309	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCACTTCTTTGTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	108053432	108014616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203_108053292_108053349
13201	chr11	-	2438	8	NIC	ENSMUSG00000017286.16	novel	1434	9	NA	NA	-22	1119	combination_of_known_splicesites	FALSE	canonical	3	6	junction_3	253.600601943533	119	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAATAGGTAAACTGCT	NA	False	NA	NA	False	NA	NA	NA	76134523	76111216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_76112858_76123847_76123935_76124027_76124142_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
13203	chr6	-	3519	16	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-10	-15	intron_retention	FALSE	canonical	3	31	junction_5	58.7136175762394	28	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTAAAATGTTTGAAATG	NA	False	NA	NA	False	NA	NA	NA	146479288	146451153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456551_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
13205	chr9	-	3557	8	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	59	-1	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	57.0273833257286	253	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGTGTTTCTGATGTG	39	True	NA	NA	False	NA	NA	NA	7836999	7818237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836695
13206	chr11	-	3445	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	55	12	55	-12	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	85	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAAATGCAACCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	40646083	40639390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
13207	chr9	+	3344	11	NNC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	252.557003466544	491	43	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1167	False	NA	NA	False	NA	NA	NA	108394305	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108394440_108405787_108406118_108407086_108407215_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
13209	chr17	-	4385	13	FSM	ENSMUSG00000024335.21	ENSMUST00000025193.14	4657	13	265	7	265	0	multi-exon	FALSE	canonical	3	100	junction_12	100.678634774216	512	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	6359	False	NA	NA	False	NA	NA	NA	34341309	34331003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579_34338875_34341135
13210	chr5	-	3520	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	0	0	0	0	multi-exon	FALSE	canonical	3	925	junction_1	0	1	153	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
13212	chr10	-	3914	17	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-8991	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	117.108373286243	2	74	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAACATACTGCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	61187097	61155444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178690_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184166_61184312_61184474_61185919_61186085_61186674
13213	chr4	+	4277	23	NNC	ENSMUSG00000028397.14	novel	4196	22	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	85.2165084111355	33	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTTCTGTCTGTCAA	NA	False	NA	NA	False	NA	NA	NA	74170189	74324098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_74170324_74181045_74181207_74188991_74189089_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
13214	chr14	+	302	1	Intergenic	novelGene_630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAATTCATTTTATGTTG	217	False	NA	NA	False	NA	NA	NA	99299184	99299486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_99299200_99299500
13215	chr8	+	3046	10	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	49624	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	334.601402814501	1	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGAGGCTCACTTG	6062	False	NA	NA	False	NA	NA	NA	107380398	107396873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387467_107390945_107391056_107392025_107392157_107392818_107392963_107395037
13216	chr2	+	2829	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	-11	intron_retention	FALSE	canonical	0	0	junction_14	113.216798172487	11	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATTCAGAATAGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	130266273	130285643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279720_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
13217	chr11	+	3255	14	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTCCCACCTCAAGGTT	NA	False	NA	NA	False	NA	NA	NA	106545042	106615229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106545991_106570376_106570436_106571856_106571915_106573704_106573788_106575045_106575162_106575786_106576066_106579593_106579878_106581761_106582011_106586579_106586856_106587877_106588180_106590416_106590711_106592019_106592142_106605846_106606013_106615210
13218	chr10	+	2342	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	-48	0	-48	0	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	1994	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGATTTCTTTGTTTTGT	1243	False	NA	NA	False	NA	NA	NA	77417505	77434566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
13219	chr16	+	2740	7	ISM	ENSMUSG00000022900.15	ENSMUST00000119464.2	2878	8	14179	-6	-7321	0	3prime_fragment	FALSE	canonical	0	0	junction_6	113.338235188111	635	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	36528578	36547109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543001_36545878
13220	chr15	+	2434	10	NNC	ENSMUSG00000023010.16	novel	944	10	NA	NA	145	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	590.350199478827	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTGTCTCAGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	99291244	99307928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99291388_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
13221	chr12	+	2362	16	NNC	ENSMUSG00000112449.2	novel	3646	16	NA	NA	-47	-979	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	243.80407434386	30	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCGTGGTCCTTGATTGT	2307	False	NA	NA	False	NA	NA	NA	55201841	55235379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55202014_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
13223	chr16	-	3254	16	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	-49	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	396.34359953062	1	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8061	False	NA	NA	False	NA	NA	NA	4867776	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839249_4844401_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849820_4854084_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
13224	chr3	-	1461	9	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-5	33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	889.31784777716	84	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAACCTTGTCTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	108352477	108333894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334228_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
13226	chr2	+	3544	23	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	50	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	137.026366829934	1	114	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTACATTTCTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	118428741	118472063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461490_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
13227	chr10	+	3650	27	NNC	ENSMUSG00000034453.9	novel	4975	28	NA	NA	120	-1931	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	65.5961848544229	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGCCTCAGTAGTGGGT	NA	False	NA	NA	False	NA	NA	NA	84458276	84561111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549601_84550108_84550271_84556281_84556382_84560598
13228	chr10	+	2883	1	Antisense	novelGene_ENSMUSG00000085666.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCACTTCCGTCCCCCTC	NA	False	NA	NA	False	NA	NA	NA	41928548	41931431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_41928500_41931400
13229	chr2	+	2747	23	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-6	0	intron_retention	FALSE	canonical	0	0	junction_14	85.518025261509	730	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGTTGTATGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	130266252	130285654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
13230	chr17	-	3301	14	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	210.374897820857	2	100	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCGAACTGTGGTGGATT	NA	False	NA	NA	False	NA	NA	NA	29226925	29189861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198282_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
13231	chr11	+	3368	27	FSM	ENSMUSG00000020464.16	ENSMUST00000154924.8	3368	27	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_10	52.7864403424181	7	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTTTATATCTTAGGA	NA	False	NA	NA	False	NA	NA	NA	29080743	29111680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
13232	chrM	+	754	2	Genic_Genomic	ENSMUSG00000064357.1	novel	681	1	NA	NA	-161	-40	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTCCTAGTAAGCCTAT	-11	True	NA	NA	False	NA	NA	NA	7765	8567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_7904_7951
13233	chr5	+	2324	14	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-1	1	intron_retention	FALSE	canonical	3	32	junction_13	256.867405299554	125	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACCCAGGTCCTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	33815928	33829543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069
13234	chr16	-	3197	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	391.35030164004	1	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAACATTTCTTGGTACC	8113	False	NA	NA	False	NA	NA	NA	4867724	4831789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832639_4832716_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867672
13235	chr13	-	3294	14	NNC	ENSMUSG00000021665.10	novel	727	6	NA	NA	27	2480	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	645.081316831796	2	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAATTCAAATATTTGAAA	NA	False	NA	NA	False	NA	NA	NA	97334838	97310358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97312034_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
13236	chr10	+	4472	22	NNC	ENSMUSG00000040033.17	novel	4394	24	NA	NA	44	3	intron_retention	FALSE	non_canonical	0	0	junction_11	24.8020736460252	1	58	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACTGTGAGAGTGTGCCT	2422	False	NA	NA	False	NA	NA	NA	128106488	128128721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117589_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119849_128119966_128120062_128120796_128120953_128121140_128121324_128121529_128121588_128126372_128126900_128127096
13237	chr1	+	2328	9	Intergenic	novelGene_466	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_7	2.23257138743647	3	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCTGCTCATCTGGCAA	NA	False	NA	NA	False	NA	NA	NA	150991303	151012212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_150991417_150992532_150992672_150993087_150993230_150994498_150994620_150995412_150995495_151003568_151003770_151008596_151008898_151009623_151010396_151011755
13238	chr7	+	3063	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	13	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	105.131794500408	21	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	1003	False	NA	NA	False	NA	NA	NA	97130232	97190605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97158986_97162826_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
13239	chr10	-	2759	12	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGCCCAGCCCAGGGTCC	NA	False	NA	NA	False	NA	NA	NA	128198346	128173635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173827_128185619_128185672_128186300_128186409_128187066_128187132_128188540_128188673_128188889_128189079_128194200_128194401_128195036_128195169_128195301_128195403_128195810_128196014_128196828_128197605_128197736
13240	chr12	-	1907	8	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGACTGCCAGCGCCCGCG	3511	False	NA	NA	False	NA	NA	NA	24764093	24758281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24758443_24758556_24758631_24758934_24759083_24759321_24759438_24760352_24760488_24761443_24761540_24761666_24761826_24763075
13241	chr4	+	4083	8	Antisense	novelGene_ENSMUSG00000028879.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGTGCGCACTGACCC	182	False	NA	NA	False	NA	NA	NA	132581376	132611790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_132584696_132585730_132585802_132587853_132587961_132590136_132590185_132590471_132590608_132595478_132595578_132598897_132598969_132611558
13242	chr12	-	5503	12	FSM	ENSMUSG00000021245.16	ENSMUST00000019378.8	5463	12	8	-48	0	48	multi-exon	FALSE	canonical	3	46	junction_10	14.4554030620371	93	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTATTATATCAGAATGC	NA	False	NA	NA	False	NA	NA	NA	85317365	85281245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85312925_85316249_85317312
13243	chr1	+	3166	9	NNC	ENSMUSG00000026174.10	novel	3268	8	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	489.727459282201	10	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGTTTTGTTTTTAAA	856	False	NA	NA	False	NA	NA	NA	74545212	74570000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74545374_74556228_74556409_74558059_74558176_74561476_74561587_74562424_74562567_74562662_74562773_74566150_74566250_74566750_74566843_74567844
13244	chr14	-	3059	15	NNC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	1	-332	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	129.005398558133	1	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAAATATATTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	67952823	67914135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67915347_67917699_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
13245	chr1	-	2099	16	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	505.506461108285	26	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	128345056	128291443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306538_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
13246	chr16	+	2800	7	NIC	ENSMUSG00000022900.15	novel	2850	7	NA	NA	-7238	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	110.150528318701	429	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	36528661	36547109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541797_36542032_36542244_36543042_36545878
13248	chr2	-	3081	19	NNC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	66.4827091602317	3	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAATCATTGTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	77776709	77726114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747440_77751380_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
13249	chr1	-	2001	11	NNC	ENSMUSG00000026234.13	novel	3072	12	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2652.56907355869	12	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGCCAGACTTAATACT	NA	False	NA	NA	False	NA	NA	NA	86287096	86278220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278415_86278533_86278758_86279088_86279205_86281432_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
13251	chr5	+	2876	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	8	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	824.87387924862	1	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACAATTTGAACTAAG	NA	False	NA	NA	False	NA	NA	NA	34493775	34510761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507262_34507416_34508133_34508183_34508574
13252	chr4	-	3034	13	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	19	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	354.349981970117	1	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	3762	False	NA	NA	False	NA	NA	NA	135069810	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069681
13253	chr9	+	2230	7	ISM	ENSMUSG00000042557.15	ENSMUST00000049169.6	4845	20	24296	5	-2584	-3	3prime_fragment	FALSE	canonical	3	329	junction_4	20.317616876877	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAACATAAGTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	57018160	57035645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
13254	chr5	+	2065	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-58	-18	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	743.999043271488	31	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTTTGTTCACTGTGAT	NA	False	NA	NA	False	NA	NA	NA	45650787	45670015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650863_45652578_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
13257	chr4	-	2916	10	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	499.603571239299	2	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327207	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304445_141304536_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
13258	chr2	+	3709	13	NNC	ENSMUSG00000027259.16	novel	2298	10	NA	NA	243	1050	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_1	51.0283145801318	51	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGTGTTACAGAATAAAA	NA	False	NA	NA	False	NA	NA	NA	120971244	120988211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120971364_120971717_120971803_120972573_120972785_120973004_120973136_120973629_120973691_120975169_120975258_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
13259	chr17	+	1998	10	NIC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-1	-99	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	1136.36406312001	7	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGTTTCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	13135324	13143855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
13260	chr8	-	3405	16	FSM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	-30	1	-25	-1	multi-exon	FALSE	canonical	3	313	junction_2	26.4222128772995	149	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCTTTGTTCAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	73175329	73131262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
13262	chr2	+	3080	14	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.7213155719746	16	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121340310	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121373630_121374759
13263	chr10	-	3740	24	NNC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	6	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	110.190606470122	6	79	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTAATTACTAATGTCT	NA	False	NA	NA	False	NA	NA	NA	62628029	62580251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62602296_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
13264	chr4	+	5071	17	Antisense	novelGene_ENSMUSG00000028228.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCGGAGTCCCGGAGCG	NA	False	NA	NA	False	NA	NA	NA	19519256	19570119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_19522195_19522779_19523294_19525001_19525240_19526283_19526417_19528058_19528114_19528189_19528243_19532398_19532531_19533052_19533115_19535211_19535301_19536528_19536623_19540737_19540833_19543255_19543337_19550586_19550660_19552243_19552319_19553717_19553896_19555359_19555502_19570000
13265	chr2	+	3704	13	NNC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	24	2188	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	113.484213292716	24	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCCTCATTTGAGAAATA	NA	False	NA	NA	False	NA	NA	NA	69553172	69582080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574116_69579330_69579442_69579615
13268	chr17	-	3240	22	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	9	3	intron_retention	FALSE	canonical	3	801	junction_11	71.1338682406936	991	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTGTGGGGTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	36280644	36267707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
13269	chr11	-	2496	13	NNC	ENSMUSG00000018593.14	novel	1304	12	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_12	285.938549633775	2247	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTCCTGTCCCGGGTG	576	False	NA	NA	False	NA	NA	NA	55314006	55285329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904_55311027_55312068_55312192_55313826
13270	chr18	+	2876	19	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-7	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	342.172836443807	2	66	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGGATTCCAAATTTAG	6268	False	NA	NA	False	NA	NA	NA	34758078	34765856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758086_34758516_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761847_34761943_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
13271	chr2	+	2097	11	NIC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	-30	-5	intron_retention	FALSE	canonical	3	1543	junction_6	123.916907643792	4000	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATATTTCTCACTTTGG	NA	False	NA	NA	False	NA	NA	NA	69691936	69702185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
13273	chr4	-	2606	18	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	192	-397	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1076.59286994316	1	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTACAAAAGCGATAAAA	10007	False	NA	NA	False	NA	NA	NA	43000241	42980359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982591_42982642_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986138_42986280_42988661_42988765_42990751_42990878_42993148_42993280_42993685_42993829_42995891_42996069_42996231_42996344_43000161
13274	chr11	-	4153	22	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACTTTCACCCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	78213206	78192449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78192535_78192718_78192845_78194869_78195866_78195967_78196146_78203939_78204014_78204171_78204264_78204336_78204461_78204643_78204766_78204988_78205083_78205168_78205281_78205528_78205623_78205784_78206115_78206332_78206467_78206723_78206866_78210290_78210403_78210809_78210896_78211154_78211279_78211386_78211950_78212087_78212242_78212321_78212399_78212511_78212591_78212951
13276	chr11	+	2903	11	NIC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	-2	0	intron_retention	FALSE	canonical	3	41	junction_4	154.476664904444	9	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50268543	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50275564_50275967_50276018_50276603
13277	chr8	+	2609	14	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	409.833015497429	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAAGCTGTGTTTCTTG	8843	False	NA	NA	False	NA	NA	NA	120637568	120684292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663301_120668466_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
13280	chr8	+	3029	13	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	274.242124874272	1	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5065	False	NA	NA	False	NA	NA	NA	107329998	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390544_107395859
13281	chr17	+	3982	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	21	-329	21	329	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	468	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATTCTGTCTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	41245596	41273208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
13282	chrX	+	2753	7	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	-2070	0	combination_of_known_junctions	FALSE	canonical	3	665	junction_2	25.7514832366776	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGGCTTCGTGTCACT	804	False	NA	NA	False	NA	NA	NA	73343459	73348295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73343931_73344183_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
13283	chr15	-	2446	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	359	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1527.45902279784	4	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAACAGTAGATGGTT	736	False	NA	NA	False	NA	NA	NA	36608858	36595916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596863_36597170_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
13286	chr3	-	4426	30	FSM	ENSMUSG00000027933.12	ENSMUST00000029542.12	4337	30	-80	-9	4	1	multi-exon	FALSE	canonical	3	154	junction_21	22.3924035870797	294	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTGACATCTCTGTTCG	NA	False	NA	NA	False	NA	NA	NA	90340916	90298693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
13287	chr2	+	3645	14	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.7213155719746	1	98	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121340335	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374220_121374759
13288	chr19	+	3268	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	246	839	14	-5	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	363	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTCCGGGTCCGTTTC	848	False	NA	NA	False	NA	NA	NA	6413965	6427221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
13289	chr15	-	3379	16	FSM	ENSMUSG00000042632.18	ENSMUST00000166977.9	3365	16	-14	0	13	0	multi-exon	FALSE	canonical	3	30	junction_8	51.9652020319581	43	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	79212390	79170427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
13290	chr7	-	3379	26	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	16	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	367.13702292196	1	96	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCCGGCCCTGAGGCCT	NA	False	NA	NA	False	NA	NA	NA	44198246	44182237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182367_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44190192_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
13291	chr1	+	3008	8	NIC	ENSMUSG00000026174.10	novel	3268	8	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	351.989331934816	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTTGTTTTGTTT	862	False	NA	NA	False	NA	NA	NA	74545218	74569990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74545374_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
13292	chr18	+	3344	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	611.34462457766	1652	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	67908062	67928557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912326_67917065_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
13293	chr5	-	3811	10	NNC	ENSMUSG00000039474.14	novel	3787	8	NA	NA	-46	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	61.2761408061797	157	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATAGCCTTGCCTTCTGG	NA	False	NA	NA	False	NA	NA	NA	37146323	37123453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_37126023_37126396_37126523_37126736_37126863_37128897_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
13294	chr4	-	3946	27	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	14	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	303.943209912758	1	137	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGAGCATTCTTGGTC	2	True	NA	NA	False	NA	NA	NA	41275102	41194325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202440_41205506_41205738_41206152_41206326_41206832_41207105_41209352_41209416_41211736_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41229768_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
13295	chr9	-	3372	5	NIC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-5	intron_retention	FALSE	canonical	3	3873	junction_2	400.681528773164	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGTGAGTAGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	110775162	110768675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
13296	chr5	+	3791	23	NIC	ENSMUSG00000029407.11	novel	3898	24	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	134.833329928116	12	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATCTCTGTCATTGTTC	NA	False	NA	NA	False	NA	NA	NA	92285804	92350654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92347675_92347784_92348993_92349210_92349715
13297	chr11	+	2584	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	35	-752	-19	752	multi-exon	FALSE	canonical	3	226	junction_6	21.0698243941424	604	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017285	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
13298	chr17	+	2637	4	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-34	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	105.889879906753	1	63	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGTCACCTTCTAAGGG	NA	False	NA	NA	False	NA	NA	NA	17284340	17309876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284419_17305782_17305910_17306151_17306213_17307505
13299	chr6	+	4581	11	NIC	ENSMUSG00000071337.12	novel	4326	13	NA	NA	17	-4	intron_retention	FALSE	canonical	3	27	junction_6	51.9847092903288	2	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTTTATTTCTTTGTAA	9839	False	NA	NA	False	NA	NA	NA	86381358	86409158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86397394_86401326_86401403_86401943_86402186_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
13300	chr1	-	2777	8	NNC	ENSMUSG00000026484.14	novel	3201	8	NA	NA	4	-105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	192.049419660245	271	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATCTAAGCAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	151376558	151345261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151345811_151345940_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
13302	chr18	-	4109	5	NIC	ENSMUSG00000038121.7	novel	9651	4	NA	NA	-20	-5593	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	95.0299294959225	223	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAAAGTTCTCCCTGACC	NA	False	NA	NA	False	NA	NA	NA	68433293	68398850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_68402024_68405633_68405746_68408832_68409346_68412337_68412500_68433144
13303	chr9	-	4082	12	FSM	ENSMUSG00000032386.16	ENSMUST00000122410.8	3915	12	6	-173	6	173	multi-exon	TRUE	canonical	3	24	junction_1	56.3782972135042	257	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCTCTTATATAGTAAGT	NA	False	NA	NA	False	NA	NA	NA	65792331	65738244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_65740731_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
13304	chr8	-	3719	22	NNC	ENSMUSG00000000759.15	novel	3797	22	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_12	37.2270718064616	19	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGTTTCATGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	12722114	12664281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699628_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
13305	chr12	-	2545	25	NIC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-10	-2331	intron_retention	FALSE	canonical	3	1685	junction_14	174.114500760276	1	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGAAGGCTTGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	13299174	13269304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
13306	chrX	-	3754	7	NNC	ENSMUSG00000025742.6	novel	3699	7	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	78.4490280373186	146	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATAGTTCTTGTCATCC	NA	False	NA	NA	False	NA	NA	NA	166165688	166129322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146679_166148010_166148214_166156998_166157183_166165465
13307	chr15	+	4555	20	NNC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	4	0	intron_retention	FALSE	canonical	0	0	junction_19	166.052773375534	26	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGGCTGTGTGAGTCTG	2247	False	NA	NA	False	NA	NA	NA	82031455	82089580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897_82088542_82088989
13308	chr4	-	3462	2	NNC	ENSMUSG00000003731.14	novel	5710	14	NA	NA	7446	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATTGTCTTCTTTGGT	9516	False	NA	-35	True	NA	NA	NA	129541282	129537778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129540245_129540286
13309	chr8	-	441	1	Antisense	novelGene_ENSMUSG00000031483.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGCAACCGTAGAAACCGC	NA	False	NA	NA	False	NA	NA	NA	27514335	27513894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_27513900_27514300
13310	chr11	-	3772	11	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	273.306494617307	4	129	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTCCATTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	88755423	88721616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732131_88735084_88736692_88755222
13311	chr13	+	5582	15	NIC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	121	junction_2	18.4158316983746	11	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCAGGCTATTGTGATC	5534	False	NA	NA	False	NA	NA	NA	51805772	51838078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51833990_51836035_51836191_51836479_51836670_51837313
13312	chr7	-	3455	20	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-16	-1	intron_retention	FALSE	canonical	3	15	junction_16	41.4448203059671	8	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGAGCCTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	140697735	140681138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140690288_140690426_140690543_140690670_140691067_140691143_140697626
13313	chr16	-	3089	8	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-9918	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	369.553287974903	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACGCATTCCTGCAACC	NA	False	NA	NA	False	NA	NA	NA	22230497	22200067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22200260_22200320_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
13314	chr1	-	2623	7	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	991	32	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	195.817658947184	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTTCCTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	13196396	13183648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13195389_13196081_13196261
13315	chr3	+	2318	9	ISM	ENSMUSG00000028101.19	ENSMUST00000162934.8	2281	14	22	1828	22	-175	intron_retention	FALSE	canonical	3	88	junction_1	29.8485761804479	5	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGGCTGGATGGTGAGTG	2668	False	NA	NA	False	NA	NA	NA	96603779	96610962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672
13316	chr4	-	1858	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	10	726	5	-724	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCAGCCAAGAATCTTAAC	NA	False	NA	NA	False	NA	NA	NA	147726960	147697119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
13317	chr10	-	2189	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-185	intron_retention	FALSE	canonical	3	1501	junction_10	183.912071381951	5	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGCCCAGGGTTCCTAT	NA	False	NA	NA	False	NA	NA	NA	127358270	127353192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
13318	chr10	+	3927	17	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	3	21	intron_retention	FALSE	canonical	3	348	junction_6	43.0671260214795	7	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTTGTTGTTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	93289315	93320758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307828_93308760_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
13319	chr9	-	2216	3	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	10642	-1819	10642	1819	3prime_fragment	FALSE	canonical	3	27	junction_1	53	25	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	124034127	124031168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_124033196_124033755_124033817_124033999
13320	chr5	+	2336	14	ISM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	41	2916	-26	-1949	intron_retention	FALSE	non_canonical	0	0	junction_5	57.2943195548602	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTGCAGATCATCAGGA	37	False	NA	NA	False	NA	NA	NA	120649273	120669173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380
13321	chr7	-	3390	12	NIC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_10	89.1434909764649	11	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTGTATTGTAAATGT	NA	False	NA	NA	False	NA	NA	NA	105401414	105394017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105401188_105401261_105401377
13322	chr18	-	3439	8	NNC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	1	2	intron_retention	FALSE	canonical	2	10	junction_5	74.3052172200745	134	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGTTACGTCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	70605550	70585280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70601589_70602573_70602849_70604743_70605051_70605361
13323	chr1	+	3780	2	FSM	ENSMUSG00000046062.6	ENSMUST00000122956.2	3688	2	-101	9	100	-9	multi-exon	FALSE	canonical	3	18	junction_1	0	20	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTAAATGCTATGTGAC	5667	False	NA	NA	False	NA	NA	NA	133058980	133067512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_133059649_133064400
13324	chr15	-	1981	5	ISM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	1940	7	-602	1	intron_retention	FALSE	canonical	3	435	junction_4	9.65660395791398	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCAACTACACTGTCTTC	8615	False	NA	NA	False	NA	NA	NA	76499108	76496589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797
13325	chr9	-	2352	15	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	30	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	641.850692314412	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATAAATGTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	36678840	36643732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661046_36670042_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678760
13326	chr19	+	4981	8	ISM	ENSMUSG00000024785.8	ENSMUST00000064393.6	1803	9	10907	-3	10907	3	3prime_fragment	FALSE	canonical	3	376	junction_5	16.2480768092719	6	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCACTGTAGTGTAAATCA	7937	False	NA	NA	False	NA	NA	NA	29089681	29121246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
13328	chr14	+	1890	11	NNC	ENSMUSG00000021939.9	novel	801	6	NA	NA	165	1269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2981.83640731681	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGGCAGGGTGCACG	NA	False	NA	NA	False	NA	NA	NA	63360127	63380581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360296_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63380183_63380308
13330	chr5	-	3544	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	-26	2	-9	-2	multi-exon	FALSE	canonical	3	925	junction_1	0	65	169	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCGGCGGTGCCCAGCT	NA	False	NA	NA	False	NA	NA	NA	135963479	135937264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
13332	chr10	-	4588	17	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-13710	-8	intron_retention	FALSE	canonical	0	0	junction_6	116.850983495005	1	121	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATACTGCTTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	61191816	61155442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61177132_61178097_61178281_61178572_61178722_61178819_61178937_61179406_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184166_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592
13333	chr15	-	1726	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-1	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1846.06830859532	91	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCACTTATTCAGAG	NA	False	NA	NA	False	NA	NA	NA	31601951	31590958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594582_31595814_31595990_31597556_31597722_31598145_31598207_31601746
13334	chr8	+	2384	16	NNC	ENSMUSG00000041438.9	novel	3113	15	NA	NA	70	0	intron_retention	FALSE	canonical	2	64	junction_5	407.6403970822	81	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	107620352	107649720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620605_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630995_107631077_107632756_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
13335	chr8	+	2339	14	Fusion	ENSMUSG00000031799.11_ENSMUSG00000003037.17	novel	2158	8	NA	NA	30	-2626	multi-exon	FALSE	canonical	0	0	junction_7	269.431924853343	25	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCTGCCCTCCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	72889131	72935122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
13336	chr7	+	3740	3	FSM	ENSMUSG00000049421.14	ENSMUST00000050735.12	4006	3	260	6	-108	2	multi-exon	FALSE	canonical	3	89	junction_1	24	311	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGATCCTTTGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	29794478	29807041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29794637_29798952_29799148_29803654
13337	chr19	-	2082	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	26	0	26	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	4	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3789	False	NA	NA	False	NA	NA	NA	7017309	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
13339	chr7	-	2466	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	33	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	519.842388974774	2	36	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCCTCTGTTGCCCTA	NA	False	NA	NA	False	NA	NA	NA	33867967	33840120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867869
13340	chr11	+	3729	22	NIC	ENSMUSG00000017119.21	novel	4789	24	NA	NA	171	352	intron_retention	FALSE	canonical	3	23	junction_1	66.5536456935459	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAATTTTATTTAAGGAG	525	False	NA	NA	False	NA	NA	NA	101443230	101472190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101443412_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
13341	chr14	+	2469	5	NIC	ENSMUSG00000025290.18	novel	519	6	NA	NA	0	1	intron_retention	FALSE	canonical	3	4464	junction_4	3411.63922293961	74	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	NA	False	NA	NA	NA	24540785	24545927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24545518_24545842
13342	chr9	-	2717	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	-202	8	-202	-7	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	780	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAACAGCCAGCTAACAAA	NA	False	NA	NA	False	NA	NA	NA	13738605	13719097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
13343	chr17	-	2855	8	FSM	ENSMUSG00000002076.13	ENSMUST00000002145.12	2867	8	-14	26	-14	-26	multi-exon	FALSE	canonical	3	776	junction_1	207.062940248828	132	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAAAATATAAATT	NA	False	NA	NA	False	NA	NA	NA	32253496	32163768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
13344	chr10	+	1325	7	ISM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	63	-378	3	374	intron_retention	FALSE	canonical	3	9741	junction_1	903.91592529394	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATGGCTCTTCTTCTGCC	4975	False	NA	NA	False	NA	NA	NA	127871506	127884880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113
13346	chr1	-	2928	12	NNC	ENSMUSG00000009907.18	novel	4633	11	NA	NA	42	-1727	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	203.461450853647	391	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGCTTTTATATGTTT	127	False	NA	NA	False	NA	NA	NA	106724355	106698886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_106700279_106701736_106701878_106704999_106705220_106705407_106705533_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
13347	chr5	-	2585	18	NIC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	-5	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	106.910142394035	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGACTGGCCTGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	30359965	30324425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30359879
13348	chr11	-	1565	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	45	-176	-5	176	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	1035	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACTCAAGGCAGCTTTTA	NA	False	NA	NA	False	NA	NA	NA	76134506	76112159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
13349	chr2	+	2233	9	NIC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	2	-76	intron_retention	FALSE	canonical	3	3726	junction_1	2304.16139503616	5	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAATATTTGTGTAGTTCA	7483	False	NA	NA	False	NA	NA	NA	75489612	75496107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75493101_75493188_75494059_75495371_75495495_75495577_75495646_75495741
13350	chr1	+	2598	22	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_17	193.442368971688	1752	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	322	False	NA	NA	False	NA	NA	NA	72346585	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72403837_72403886_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
13353	chr6	-	3877	14	FSM	ENSMUSG00000029924.13	ENSMUST00000201448.4	2669	14	-3	-1205	0	-7	multi-exon	FALSE	canonical	3	31	junction_9	72.7375113825747	17	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGGGAAACATTTTGCCC	NA	False	NA	NA	False	NA	NA	NA	39354609	39311713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
13354	chr11	+	2853	4	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53288	1622	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	144.269038797503	36	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATTTGAGAATTATTTTG	NA	False	NA	NA	False	NA	NA	NA	62402721	62406865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62402827_62402963_62403098_62403729_62405978_62406499
13355	chr2	+	3277	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	154	-800	4	800	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	1208	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTCTCTCAACTCTAAA	NA	False	NA	NA	False	NA	NA	NA	71042331	71094447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
13356	chr3	+	3985	14	NNC	ENSMUSG00000007379.16	novel	4979	19	NA	NA	-160	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	112.5847478293	1	54	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCCCACAGATCTCT	4557	False	NA	NA	False	NA	NA	NA	103034711	103077049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103034967_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056534_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064126_103075439
13357	chr14	-	3215	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	78	0	-76	0	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	409	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	NA	False	NA	NA	NA	45767497	45696251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
13358	chr9	-	8001	47	Fusion	ENSMUSG00000096655.3_ENSMUSG00000097777.8	novel	1490	2	NA	NA	3011	-2099	multi-exon	TRUE	non_canonical	0	0	junction_1	0	81	60	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGCGTCGACGGAGCCCC	NA	False	NA	NA	False	NA	NA	NA	95833683	95739703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_95739834_95743418_95743513_95744834_95744985_95747019_95747898_95748634_95748815_95749546_95749738_95751933_95752124_95752670_95752826_95753056_95753250_95753486_95753737_95756125_95756322_95756404_95756503_95756753_95756926_95757644_95757818_95760507_95760701_95763276_95763464_95765167_95765261_95767393_95767524_95770148_95770295_95772813_95772908_95775465_95775592_95779586_95779795_95781088_95781202_95785713_95785830_95787788_95787910_95789346_95789485_95790300_95790497_95792529_95792707_95796985_95797153_95798480_95798568_95802390_95802487_95802716_95802894_95803701_95803884_95804798_95804959_95809219_95809400_95814380_95814524_95817529_95817628_95818345_95818579_95819564_95819705_95821204_95821403_95822921_95823065_95824636_95824789_95827139_95827302_95827400_95827549_95829135_95829295_95832595_95832702_95833501
13359	chr9	+	3978	21	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	764	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	248.432742407276	1	159	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATAGGTTGTATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	44292589	44303653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295917_44296113_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299899_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
13360	SIRV7	-	2110	6	NNC	SIRV7A	novel	2247	6	NA	NA	-41	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1373.66872280037	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	114779	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43079_114680
13361	chr5	+	1892	9	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	14	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1371.01417183594	30	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	300	False	NA	NA	False	NA	NA	NA	77099167	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112401_77114477
13362	chr16	-	2463	1	ISM	ENSMUSG00000022533.15	ENSMUST00000061350.13	7220	33	73645	0	18963	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3067	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAATATTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	30133703	30131240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_30131200_30133700
13363	chr15	-	4294	10	FSM	ENSMUSG00000022280.10	ENSMUST00000022890.10	4277	10	-17	0	-17	0	multi-exon	FALSE	canonical	3	142	junction_2	15.6946165182307	116	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTGTGCCCAGGAAT	NA	False	NA	NA	False	NA	NA	NA	36283310	36240078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36242212_36244232_36244377_36245561_36245776_36247267_36247430_36247896_36248012_36253146_36253310_36254528_36254674_36260160_36260370_36265421_36266178_36283057
13364	chr4	-	3235	10	NIC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	1	-6	intron_retention	FALSE	canonical	3	61	junction_8	119.037290557245	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAATGGGCTTTGTTTTT	5482	False	NA	NA	False	NA	NA	NA	132073015	132059239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132066553_132067235_132067318_132072956
13365	chr11	+	3310	5	NIC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	644	0	intron_retention	FALSE	canonical	3	997	junction_2	97.3996278226976	6	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAAGGCTCCTTTCCTTT	2278	False	NA	NA	False	NA	NA	NA	120675984	120679927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120677514_120677597_120677676_120677834_120677896_120678205_120678808_120678887
13366	chr4	-	3655	12	ISM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	19671	0	-10520	0	3prime_fragment	FALSE	canonical	3	315	junction_5	48.4776509809221	2	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	4729	False	NA	NA	False	NA	NA	NA	133894752	133857168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599
13367	chr11	-	1956	12	NIC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	49	-2	combination_of_known_splicesites	TRUE	canonical	2	12	junction_10	744.815934885596	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	5250	False	NA	NA	False	NA	NA	NA	88846242	88814847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88843231_88843381_88846119
13369	chr6	-	2276	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	1	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122704928_122706369_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
13370	chr11	+	2571	23	NIC	ENSMUSG00000059439.16	novel	3810	28	NA	NA	-3	-19047	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	31.0287789635194	233	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	3475	False	NA	NA	False	NA	NA	NA	85243989	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_85244060_85245419_85245488_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
13371	chr17	+	5075	22	Antisense	novelGene_ENSMUSG00000064853.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	0.42591770999996	528	34	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGTCTCCCTCGCTCACT	9079	False	NA	NA	False	NA	NA	NA	35368058	35383814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35368388_35368495_35368576_35368674_35368773_35368885_35369098_35369203_35369305_35369475_35369550_35374642_35376183_35376322_35376540_35376857_35377155_35377367_35377560_35377911_35378389_35378754_35378969_35379073_35379169_35379430_35379571_35379728_35379809_35380003_35380158_35380309_35380451_35380614_35380688_35380781_35380886_35381177_35381359_35381850_35382025_35383712
13372	chr3	-	3559	21	NNC	ENSMUSG00000002227.16	novel	3584	21	NA	NA	28	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	522.735332171071	1	145	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104725851	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704287_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708709_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712023_104712215_104712424_104725251_104725438_104725672
13373	chr5	-	2269	7	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	151	junction_2	333.583281289029	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100182844_100183962_100184055_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
13374	chr7	-	4009	22	NIC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	3	0	intron_retention	FALSE	canonical	3	238	junction_21	181.885750689423	1041	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	6931	False	NA	NA	False	NA	NA	NA	126101583	126090879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
13375	chr5	-	3400	1	Genic_Genomic	ENSMUSG00000047215.15	novel	NA	NA	NA	NA	0	365	mono-exon	FALSE	NA	NA	NA	NA	NA	24	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTCCCAGACCTGTAACT	NA	False	NA	NA	False	NA	NA	NA	65548741	65545341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_65545300_65548700
13376	chr5	-	2953	14	NNC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	-17	-11	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	222.489810949471	24	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCCCAAGTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	52347873	52307555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_52308121_52309151_52309322_52311378_52311507_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
13377	chrX	+	3871	19	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	12	-142	intron_retention	FALSE	canonical	3	183	junction_12	33.6327753872159	34	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGGTTTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	20570184	20586634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
13379	chr5	-	3631	17	NIC	ENSMUSG00000042508.17	novel	3453	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	76.7776568654579	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTGAGCCATGCAATTA	NA	False	NA	NA	False	NA	NA	NA	9211738	9168867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176803_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9200375_9200493_9201797_9201919_9211613
13380	chr11	+	4022	2	Antisense	novelGene_ENSMUSG00000025140.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGTACACACACAACAGACA	212	False	NA	NA	False	NA	NA	NA	120530300	120534518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120533791_120533986
13381	chr10	-	3226	15	NNC	ENSMUSG00000038446.9	novel	3534	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	55.7671909982629	10	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	NA	False	NA	NA	NA	40759089	40707616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724010_40725780_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
13383	chr13	-	2119	12	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	1	-84	intron_retention	FALSE	canonical	3	2035	junction_3	144.119268789304	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTATCCCTGAATCAA	NA	False	NA	NA	False	NA	NA	NA	97334802	97312922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
13384	chr17	-	1244	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-216	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821664	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820435_35820874_35821037_35821184
13386	chr11	+	2690	10	NNC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	12	752	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	109.333785003584	424	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017316	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105021754_105021892_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
13387	chr7	-	3693	19	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	7	-1	intron_retention	FALSE	canonical	3	117	junction_14	21.2478030817887	6	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGTAGATCCAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	140697712	140681125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
13388	chr6	-	2606	9	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	-70	-7	intron_retention	TRUE	non_canonical	0	0	junction_3	269.397823859065	1	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTACCCAAACTGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	72416441	72409789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72411379_72411963_72412098_72412188_72412331_72412842_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
13389	chr6	-	3234	25	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-32	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	162.524608179466	3	43	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCCTGGCTGGTCTGTC	3574	False	NA	NA	False	NA	NA	NA	125168485	125144965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145113_125148340_125148517_125148598_125148723_125148795_125148847_125150331_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
13393	chr19	+	4254	15	FSM	ENSMUSG00000025026.16	ENSMUST00000237430.2	4054	15	-200	0	18	0	multi-exon	TRUE	canonical	3	178	junction_5	22.1124214791929	202	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGGTATAATGGGGT	2501	False	NA	NA	False	NA	NA	NA	53131204	53235518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_53131521_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
13394	chr17	+	3099	12	FSM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	-20	-2	0	2	multi-exon	FALSE	canonical	3	299	junction_6	38.250587420542	467	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACAGTGTTGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8384351	8415309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
13395	chr15	-	1671	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-25	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1821.74519623355	5	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCACTTATTCAGAG	NA	False	NA	NA	False	NA	NA	NA	31601911	31590958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592560_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
13396	chr18	-	2249	12	FSM	ENSMUSG00000117679.2	ENSMUST00000236001.2	2258	12	-41	50	9	-50	multi-exon	FALSE	canonical	3	26	junction_10	13.4925752462923	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAACTTTATAGCAGAAT	NA	False	NA	NA	False	NA	NA	NA	36812410	36804257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
13398	chr19	-	1953	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1155.38441345603	1	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902331	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895735_15898308_15898361_15902227
13400	chr2	+	4665	19	Genic_Genomic	ENSMUSG00000085818.8	novel	698	4	NA	NA	569	42403	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGAGGCTCTCCGCTCTT	5478	False	NA	NA	False	NA	NA	NA	5900979	5947345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_5902338_5902994_5903624_5904721_5904808_5907139_5907310_5907778_5907861_5908769_5908935_5910508_5910666_5915112_5915219_5916623_5916780_5918326_5918461_5919618_5919706_5922483_5922799_5924252_5924449_5926474_5926646_5928677_5928950_5934448_5934643_5935584_5935800_5937199_5937355_5947328
13401	chr15	-	4102	7	NNC	ENSMUSG00000022195.8	novel	3206	8	NA	NA	-2499	-668	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	125.538396074225	2	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGCAGCCCACAACCTCA	4184	False	NA	NA	False	NA	NA	NA	12820485	12809525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_12810111_12810347_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943
13402	chr19	+	2889	19	NIC	ENSMUSG00000024811.12	novel	6481	27	NA	NA	-23	-2247	combination_of_known_junctions	FALSE	canonical	3	243	junction_10	179.533827068128	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTACTATAAACTGTTCTA	951	False	NA	NA	False	NA	NA	NA	36835257	36868630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196_36851417_36852663_36852774_36856634_36856888_36857909_36857993_36859076_36859198_36861465_36861564_36862882_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
13403	chr13	-	1935	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-18	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	229.248046156705	157	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314467	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312515_34312854_34312966_34313228_34313347_34314072
13405	chr12	+	3632	7	NNC	ENSMUSG00000043061.11	novel	762	3	NA	NA	-2984	4	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	79.2983115975506	37	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	30631440	30641218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_30631943_30633078_30633302_30633704_30633774_30635468_30635590_30637198_30637254_30638472_30638567_30638650
13406	chr13	-	1933	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2519.4406536175	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGGTCTTTTTTTTT	4754	False	NA	NA	False	NA	NA	NA	58550327	58539762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
13409	chr11	-	2287	16	NNC	ENSMUSG00000020400.18	novel	2642	17	NA	NA	16311	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	72.4557796176399	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTGACTGGCTAAT	NA	False	NA	NA	False	NA	NA	NA	54830562	54801613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802127_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423
13411	chr5	+	1927	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	1460.87498930436	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	325	False	NA	NA	False	NA	NA	NA	77099192	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099279_77099615_77099683_77104392_77104591_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
13412	chr14	-	2162	5	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-26	333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2355.05021177893	45	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTCTGTCTTTAGTCTC	NA	False	NA	NA	False	NA	NA	NA	36857255	36842447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847197_36855156_36855228_36855589_36855761_36857151
13413	chr1	-	3009	6	NIC	ENSMUSG00000003051.14	novel	2095	9	NA	NA	-97	-8	intron_retention	FALSE	canonical	3	502	junction_2	52.2471051829668	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTAACCTTGGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	135185484	135181324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135182119_135182662_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742
13414	chrX	+	3757	7	FSM	ENSMUSG00000072966.12	ENSMUST00000173804.8	3814	7	48	9	-9	-5	multi-exon	FALSE	canonical	0	0	junction_1	54.6669207311169	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCATAAATGACCCTTCT	NA	False	NA	NA	False	NA	NA	NA	134739830	134745470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134740012_134740493_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
13416	chr13	+	5245	11	FSM	ENSMUSG00000021697.13	ENSMUST00000051594.12	2563	11	10	-2692	10	2692	multi-exon	FALSE	canonical	3	89	junction_3	8.78009111570034	231	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACTGCAGTAATTGAAA	2857	False	NA	NA	False	NA	NA	NA	108452875	108528811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108453004_108460439_108460706_108493927_108494064_108498768_108498897_108500066_108500198_108505346_108505395_108510246_108510388_108519289_108519457_108521259_108521437_108523368_108523555_108525074
13417	chr17	+	3826	29	FSM	ENSMUSG00000007029.17	ENSMUST00000173584.8	4048	29	49	173	49	-154	multi-exon	FALSE	canonical	0	0	junction_12	416.176527192145	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGCCTCCAGCTACTCA	9587	False	NA	NA	False	NA	NA	NA	35220075	35234833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569
13418	SIRV7	-	2153	6	NNC	SIRV7A	novel	2462	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1670.53363929015	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147918	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1812_2118_2676_2993_3112_43028_43078_114680_114989_147608
13422	chr2	+	2594	10	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	2	-7	intron_retention	FALSE	canonical	3	170	junction_9	887.531157512544	1	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGATAGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	130116376	130121220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
13423	chrX	+	3742	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-895	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	183.663849796911	1	130	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAATAGCAGGAACTCT	NA	False	NA	NA	False	NA	NA	NA	150799449	150844795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820666_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
13424	chrX	-	3825	6	FSM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	-111	-3254	-2	0	multi-exon	FALSE	canonical	3	79	junction_5	268.200372855818	796	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTTTAAAAACTTTTTA	NA	False	NA	NA	False	NA	NA	NA	162741659	162733381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
13425	chr6	+	2388	13	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	445.70234835968	3	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	71808338	71852238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839373_71845652_71845788_71848410_71848543_71849777_71849908_71851300
13427	chr17	-	3075	8	Intergenic	novelGene_30	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	135	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTCCGGAAGAAACACC	NA	False	NA	NA	False	NA	NA	NA	17263571	17225411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17225537_17257535_17257656_17257896_17257966_17259256_17259585_17260008_17260894_17261061_17261311_17261731_17262833_17263373
13428	chr8	+	4095	15	NIC	ENSMUSG00000031889.10	novel	2916	16	NA	NA	18	-7	intron_retention	TRUE	canonical	3	239	junction_8	14.0467513856335	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAATGTGAGCTGTTGA	NA	False	NA	NA	False	NA	NA	NA	105951794	105979678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
13429	chr5	+	2615	11	NNC	ENSMUSG00000050017.12	novel	2632	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	452.039644279127	2	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478626	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368_111534868_111534930
13430	chr19	+	4107	7	NNC	ENSMUSG00000024780.8	novel	5179	7	NA	NA	2	-1302	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	71.3755716069736	232	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGAACATACTGATTAGA	3852	False	NA	NA	False	NA	NA	NA	28967782	28996335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993292
13431	chr14	+	2414	8	NNC	ENSMUSG00000040618.8	novel	480	3	NA	NA	281	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	740.616869196736	3	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCACAGGACTCCCCA	NA	False	NA	NA	False	NA	NA	NA	55780142	55786325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55780771_55780828_55781231_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
13432	chr12	-	5400	20	FSM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	45	1	1	-1	multi-exon	TRUE	canonical	0	0	junction_19	22.9818668733885	101	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGCTAAATGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85017629	84964924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_84967355_84967453_84967630_84968031_84968122_84970633_84970693_84970769_84970900_84972467_84972594_84973007_84973188_84974074_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826_84998156_85017402
13433	chr9	+	2946	13	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	-682	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	380.283474310064	31	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	25163052	25219862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163737_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
13434	chr11	-	2415	16	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	16	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	451.954687994272	11	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239103	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191875_75196924_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
13435	chr1	-	2367	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	58	5777	22	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287064	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
13437	chr16	-	2903	24	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	86.7012557606439	502	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCTGCCTTTAACTGTT	NA	False	NA	NA	False	NA	NA	NA	13486002	13355826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13423979_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
13438	chr17	-	2985	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-25	-1035	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	321.906600390548	1	73	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTACTGTGCTTCAAC	8712	False	NA	NA	False	NA	NA	NA	24470346	24442206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443877_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453480_24456092_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468367_24470268
13439	chr4	+	5626	24	NNC	ENSMUSG00000045751.17	novel	4478	24	NA	NA	1	0	intron_retention	FALSE	canonical	0	0	junction_23	88.4584423910219	5	120	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTCTGTGAATATTTA	-4	True	NA	NA	False	NA	NA	NA	24496462	24602950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24601413
13440	chr6	-	2651	9	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	0	-24	intron_retention	FALSE	non_canonical	0	0	junction_5	328.018196903769	2	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9172	False	NA	NA	False	NA	NA	NA	88495810	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485678_88492322_88492405_88492485_88492552_88495352_88495421_88495667
13441	chr5	-	2925	17	NNC	ENSMUSG00000029472.14	novel	2413	17	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_1	924.087311553946	2	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCTGAAGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	122959343	122925792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926374_122926528_122929670_122929998_122931499_122931622_122932479_122932555_122937401_122937937_122938513_122938657_122938960_122939035_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
13442	chr8	-	2509	17	Antisense	novelGene_ENSMUSG00000005410.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGGAAAAACCAGCCTCCG	NA	False	NA	NA	False	NA	NA	NA	75854318	75836196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_75836232_75836381_75836445_75836712_75836842_75836924_75837055_75839169_75839345_75840792_75840945_75842475_75842644_75844145_75844320_75845882_75845996_75847406_75847558_75847843_75847901_75848160_75848342_75849618_75849733_75850468_75850596_75851426_75851569_75852862_75852991_75853848
13444	chr17	-	3909	15	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCCTGGCCTCCCGGA	NA	False	NA	NA	False	NA	NA	NA	56629540	56611349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56611387_56612080_56612248_56616334_56616565_56617667_56617837_56619053_56619968_56620040_56620251_56622190_56622314_56622396_56622505_56622774_56622881_56624002_56625149_56625244_56625377_56627153_56627281_56627394_56627542_56629019_56629124_56629351
13445	chr7	-	2295	3	FSM	ENSMUSG00000025465.14	ENSMUST00000147643.2	4088	3	-5	1798	2	1176	multi-exon	FALSE	canonical	3	1661	junction_1	122.5	8	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCTCAGGATGCAAAGCA	NA	False	NA	NA	False	NA	NA	NA	139696333	139690476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139692460_139692848_139693047_139696219
13446	chr10	+	2509	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	86	51	85	-51	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	40	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTTGTTTTGCACTAAA	7075	False	NA	NA	False	NA	NA	NA	60113534	60138322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
13447	chr3	+	2708	13	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	2	-1	intron_retention	FALSE	canonical	0	0	junction_7	385.870840509562	3	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGCTTTTGGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	90383434	90395269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391800_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
13449	chr12	-	2493	9	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-5	0	intron_retention	FALSE	non_canonical	0	0	junction_4	839.89757560074	7	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860105	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833708_108841048_108841223_108841591_108841649_108848782_108848835_108854301_108854475_108859994
13450	chr16	+	4033	5	NIC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-2391	5	combination_of_known_junctions	FALSE	canonical	1	310	junction_4	173.118998090909	8	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTGCCCCTTCAGTAAA	NA	False	NA	NA	False	NA	NA	NA	38393412	38411713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38393639_38396104_38396189_38402331_38402487_38405537_38408666_38411273
13451	chr7	+	2895	14	FSM	ENSMUSG00000030523.19	ENSMUST00000177102.8	2928	14	-38	71	-38	1	multi-exon	FALSE	canonical	3	45	junction_13	349.928648686554	195	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATCTTAGATGAATTGG	NA	False	NA	NA	False	NA	NA	NA	63835168	63874513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
13453	chr2	+	5457	8	FSM	ENSMUSG00000027164.9	ENSMUST00000004949.8	6169	8	9	703	9	-703	multi-exon	FALSE	canonical	3	72	junction_2	13.2603444409969	91	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAAAGAGTTGTAGT	NA	False	NA	NA	False	NA	NA	NA	101508793	101531311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_101508966_101511169_101511373_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
13454	chr2	+	2507	16	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	413.504179745098	6	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867581	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871060_84871501_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
13455	chrX	+	3478	13	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	-363	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	312.718845592793	1	93	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCCCCAGGGTTCAGT	NA	False	NA	NA	False	NA	NA	NA	95139647	95211795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139854_95185475_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
13456	chr2	-	3546	22	NNC	ENSMUSG00000006800.15	novel	3927	21	NA	NA	-181	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.198351124904	7	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAAAGGCTATCTTGGGA	NA	False	NA	NA	False	NA	NA	NA	165996907	165915842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165916061_165916140_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165996866
13457	chr3	+	3380	2	FSM	ENSMUSG00000068744.13	ENSMUST00000143309.2	1013	2	-144	-2223	-144	-12	multi-exon	FALSE	canonical	3	504	junction_1	0	3	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTTTCTGTATATCTG	7443	False	NA	NA	False	NA	NA	NA	108291565	108295483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_108291748_108292285
13458	chr8	-	4385	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	-28	-1207	-4	-5	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	2113	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTTTCTGAGTCTGATA	NA	False	NA	NA	False	NA	NA	NA	66939177	66925774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
13459	chr1	-	6461	11	FSM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	-3	34	-3	-34	multi-exon	FALSE	canonical	3	66	junction_1	7.25534285888682	133	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGAATAAAGGGCACAGA	NA	False	NA	NA	False	NA	NA	NA	21149456	21066556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449_21074555_21075790_21075862_21076373_21076459_21077076_21077136_21083016_21083134_21083625_21083736_21107620_21107685_21149217
13460	chr15	+	2654	11	NIC	ENSMUSG00000023010.16	novel	944	10	NA	NA	18	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	719.435257684804	70	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99291117	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_99291265_99297537_99297753_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
13461	chr17	-	4106	11	NNC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	-8354	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	179.85538635248	817	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCAGTTGCCGCTTACTT	NA	False	NA	-46	True	NA	NA	NA	54004715	53981815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238_53996450_53996943_53997053_54004432
13463	chr19	+	2540	2	NNC	ENSMUSG00000100141.2	novel	1112	2	NA	NA	-294	1059	intron_retention	TRUE	non_canonical	0	0	junction_1	0	1	101	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	9584173	9586799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9584904_9584989
13464	chr10	+	3517	12	Antisense	novelGene_ENSMUSG00002076354.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	99	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCGCAGGGCACACTGGG	3253	False	NA	NA	False	NA	NA	NA	128394518	128401863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128394840_128394929_128394984_128395097_128395220_128395299_128395401_128395947_128396163_128396526_128396605_128396785_128396852_128398695_128398791_128398936_128399005_128399092_128399201_128399447_128400535_128400661
13468	chr12	-	4034	12	NIC	ENSMUSG00000020664.11	novel	2544	14	NA	NA	8	-289	intron_retention	FALSE	canonical	3	710	junction_4	64.671324134343	3	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTACTGGTTATTCTG	NA	False	NA	NA	False	NA	NA	NA	31401405	31381564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31393443_31394821_31394902_31399595_31399675_31401299
13469	chr17	-	3446	8	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	157.427275078925	17	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTCAGTTGCCGCTTACT	NA	False	NA	NA	False	NA	NA	NA	53996313	53981816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53996238
13471	chr11	+	3380	9	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4499	intron_retention	FALSE	canonical	3	262	junction_2	2356.70638816124	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAGAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_55360628_55376451_55376565_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738
13472	chr17	+	2608	14	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	7224	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	492.925393733151	1	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	750	False	NA	NA	False	NA	NA	NA	87987260	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87987488_87989949_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
13473	chr14	-	3010	11	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	4	-4	intron_retention	FALSE	non_canonical	0	0	junction_4	283.653732568426	97	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATGTGTTTAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	30740966	30734394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735967_30736083_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739824_30740885
13474	chr5	-	2956	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	46	22	12	-1	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTAGTGTGTGTTAACTG	8303	False	NA	NA	False	NA	NA	NA	137305890	137293987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
13475	chr10	+	2447	13	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	87	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	294.460936383004	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7077	False	NA	NA	False	NA	NA	NA	60113536	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60134990_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
13476	chr7	-	2780	14	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	3084	-1250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	73	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTCGAGCCGTTGGACCC	NA	False	NA	NA	False	NA	NA	NA	79965867	79944226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79944338_79950046_79950180_79950782_79950910_79954109_79954339_79954424_79954598_79955663_79955815_79956121_79956268_79957303_79957442_79959138_79959232_79960485_79960634_79960815_79960935_79961970_79962074_79962777_79962879_79964859
13477	chr8	-	2510	17	Antisense	novelGene_ENSMUSG00000081745.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	20	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGACCAGCCAACCACAGG	NA	False	NA	NA	False	NA	NA	NA	69280299	69246597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69246798_69247259_69247329_69249366_69249472_69250408_69250549_69254965_69255048_69255532_69255674_69257460_69257637_69260112_69260282_69261025_69261161_69263229_69263383_69264558_69264644_69266215_69266452_69266905_69267015_69271937_69272013_69273299_69273470_69274808_69274903_69279928
13479	chr17	-	3156	13	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	213.941775568339	1	83	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATAATCGAACTGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	29226915	29189864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201155_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
13480	chr6	-	2786	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	-1	19	-1	-18	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCTAGGTTCTACCCA	NA	False	NA	NA	False	NA	NA	NA	72416542	72409800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
13481	chr10	+	2424	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	20	12	3	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	3	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCATAAATTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	21870584	21875790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
13484	chr11	-	2993	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	70	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	931.539392022092	1	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5271	False	NA	NA	False	NA	NA	NA	88846221	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824399_88825403_88825498_88826648_88827343_88827449_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
13485	chr3	+	2617	11	NNC	ENSMUSG00000027680.16	novel	1986	15	NA	NA	-93	-3579	intron_retention	FALSE	non_canonical	0	0	junction_4	360.251523244524	1	12	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTTTTGCATTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	34100687	34119907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34100735_34101114_34101209_34101780_34101898_34103301_34103420_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267
13486	chr13	+	4501	27	FSM	ENSMUSG00000042426.7	ENSMUST00000038574.7	4682	27	178	3	-16	-3	multi-exon	TRUE	canonical	3	222	junction_12	28.2580040501697	189	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTTTGTCCATCTCTG	NA	False	NA	NA	False	NA	NA	NA	113064165	113105963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617_113069764_113072002_113072132_113076906_113077034_113078206_113078366_113081027_113081194_113081603_113081728_113083296_113083909_113084745_113084890_113089336_113089514_113090207_113090349_113091681_113091827_113091933_113092052_113092915_113093001_113095446_113095536_113096652_113096782_113096856_113096933_113097594_113097820_113099267_113099405_113099796_113099891_113100980_113101275_113101748_113101881_113103069_113103167_113105668
13487	chr2	+	3607	14	NNC	ENSMUSG00000036646.14	novel	3755	13	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	104.397907435557	5	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCAGTGTTACTTT	4007	False	NA	NA	False	NA	NA	NA	25222782	25242224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373_25240495_25240600
13488	chr10	+	3095	8	Antisense	novelGene_ENSMUSG00000025403.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACGCGTGCGCGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	127353129	127358265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_127353789_127353896_127354001_127354092_127355128_127355255_127355381_127355498_127355581_127355839_127356046_127356209_127356985_127358156
13489	chr4	-	4205	2	FSM	ENSMUSG00000046312.5	ENSMUST00000054920.5	4173	2	-34	2	-34	-2	multi-exon	FALSE	canonical	3	158	junction_1	0	186	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTATTTGTTGTTTTCTTG	-26	True	NA	NA	False	NA	NA	NA	41503110	41495605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41499691_41502990
13490	chr9	-	4208	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	23	-536	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	301.8849625474	2	129	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCCCTTCCTCCAAGGC	NA	False	NA	NA	False	NA	NA	NA	96993187	96958153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962204_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
13491	chr7	+	2883	28	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	43	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	411.854116700407	1	84	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGAGGTCTACATTGAG	2672	False	NA	-65	True	NA	NA	NA	13012803	13045355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012873_13014103_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023313_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026451_13029440_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
13493	chr4	-	3599	12	ISM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	8434	8	1685	-8	3prime_fragment	FALSE	canonical	2	1838	junction_11	323.913390117668	8	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGAGCCTGCGTTCTG	8395	False	NA	NA	False	NA	NA	NA	42992073	42979970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745
13495	chr8	+	1349	10	NNC	ENSMUSG00000110547.2	novel	1895	2	NA	NA	3027	15763	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	72	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGGAAAATGAAATACATC	NA	False	NA	NA	False	NA	NA	NA	124626038	124643122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124626249_124629336_124629427_124631290_124631355_124632951_124633036_124634494_124634617_124636624_124636758_124638486_124638647_124641236_124641371_124641913_124642168_124643024
13496	chr15	-	3208	9	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	211.39207500519	2	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033530	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022368_83022724_83033395
13498	chr11	-	2565	16	NNC	ENSMUSG00000020717.20	novel	2977	16	NA	NA	-9034	-12	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_15	389.387005432898	22	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAATTTGTCCAGGGT	390	False	NA	NA	False	NA	NA	NA	106615254	106552634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
13499	chr4	+	2280	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2473	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	129.658097403217	2	64	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	147576867	147600416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801_147597552_147597965_147598445_147599366_147599685_147600053
13501	chr6	+	1393	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	17	207	-10	38	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATCTGTTTTGAAAAC	5889	False	NA	NA	False	NA	NA	NA	67244011	67261088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
13502	chr10	+	2750	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-4	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	251.184667175808	1	49	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171912	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218460_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
13503	chr18	+	2371	16	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	504.126633121304	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	6432	False	NA	-90	True	NA	NA	NA	77126250	77240813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126270_77126307_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240318_77240515_77240689
13504	chr14	-	2463	18	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	188.341330428042	37	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGCTTTACCCTGCTTC	4859	False	NA	NA	False	NA	NA	NA	54754818	54744652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745119_54745173_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
13505	chr4	-	2589	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	2	3	2	-1	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	196	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147726968	147696396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
13507	chr11	-	2097	12	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	8	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1626.11698419302	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCAATGCATGGCCTTC	9689	False	NA	NA	False	NA	NA	NA	106679285	106672416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676125_106676220_106676363_106676892_106676959_106677051_106677157_106677763_106677901_106679098
13508	chr11	+	1557	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	1	-35	multi-exon	FALSE	canonical	3	1960	junction_1	0	28	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTGGACAGTCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653620	120655210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
13509	chr10	-	2160	15	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	2265	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	657.41109820326	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAAGCCGAGCCCTCTCC	2880	False	NA	NA	False	NA	NA	NA	127142577	127132100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133518_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127142408
13510	chrX	+	2967	11	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	60	0	intron_retention	FALSE	non_canonical	0	0	junction_10	659.469248714449	8	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74139519	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148913_74153083
13511	chr11	-	3938	23	NNC	ENSMUSG00000001441.14	novel	4215	23	NA	NA	72	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.016043811114	490	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAATGTGAATTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	97171162	97096679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97098095_97103100_97103154_97103857_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97127048_97128919_97129085_97131776_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97158420_97158506_97171026
13512	chr1	+	3208	8	NNC	ENSMUSG00000026174.10	novel	3268	8	NA	NA	-31	-37	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	359.385984304182	8	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGGATTAAAATAAAACATG	829	False	NA	NA	False	NA	NA	NA	74545185	74569964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562716_74562773_74566150_74566250_74566750_74566843_74567844
13513	chr5	-	2302	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	561	99	-43	-82	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTGAATGCCCCCTCAA	2277	False	NA	NA	False	NA	NA	NA	138170123	138162943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
13515	chr17	+	2152	4	Intergenic	novelGene_37	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	89.4315380612455	4	29	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAACAGTCACCTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	17373376	17426474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17373546_17422956_17423084_17423325_17423387_17424679
13516	chrUn_JH584304v1	-	2185	10	Intergenic	novelGene_4600	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	8	junction_9	330.146806103356	254	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTCATGTGAGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	61455	52160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_53833_54318_54480_54720_54868_55111_55702_56985_57152_57410_57500_58563_58836_59591_59774_61381
13517	chr4	-	2600	11	NNC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-28	-3	intron_retention	FALSE	canonical	0	0	junction_9	197.059787881749	20	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCTTTGTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	132080944	132059236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132060314_132061417_132061571_132061795_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132078921_132079048_132080907
13518	chr2	+	961	6	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCACTCTCAATCTTAACA	NA	False	NA	NA	False	NA	NA	NA	154714360	154726344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230
13519	chr14	+	2847	12	NIC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	-53	1810	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	526.798626980395	5	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACCTTTAAGAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	79825195	79868227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
13520	chr7	+	2749	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-41	1022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	205	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTGTTCAGGATTGTA	246	False	NA	NA	False	NA	NA	NA	44465682	44481258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44477973_44478796
13521	chr10	-	3677	10	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	22	-182	intron_retention	FALSE	non_canonical	0	0	junction_6	649.504844639266	2	115	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCAGGGTTCCTATTAC	NA	False	NA	NA	False	NA	NA	NA	127358211	127353189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355126_127355253_127355381_127355498_127355581_127355839_127356041_127356206
13522	chr2	+	3965	6	NNC	ENSMUSG00000027323.11	novel	2975	9	NA	NA	25	497	intron_retention	FALSE	non_canonical	0	0	junction_1	363.900865621394	18	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTAGTTGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	118943322	118966186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118943507_118954264_118954357_118957543_118957639_118961984_118962148_118962215_118964990_118965529
13523	chr16	-	2192	17	NIC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	-17	-7	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	297.983004706225	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGTGGCAGACGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	3895656	3857841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_3858089_3858222_3858296_3861816_3861963_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
13524	chr4	-	3403	9	NIC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	14	10	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	177.349892514769	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTTTTGTTTGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	126954931	126941375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126947768_126947823_126948000_126948176_126952585_126952825_126953302_126953453_126954788
13525	chr5	+	2169	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	405	14	405	-14	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	9	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864466	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
13526	chr14	-	1874	7	NNC	ENSMUSG00000022051.16	novel	3259	7	NA	NA	28	811	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	270.697042630482	37	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGAGTTCAGAGCACAGC	NA	False	NA	NA	False	NA	NA	NA	67246277	67223910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67224665_67224756_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
13527	chr8	+	2631	22	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	-2	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	256.992919249184	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGTATTTCTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	94941202	95041469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027433_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
13528	chr5	-	2864	2	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	79	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939990_135963316
13530	chr11	-	3795	13	FSM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	45	-1701	45	1701	multi-exon	FALSE	canonical	3	189	junction_12	23.7876893931854	355	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGTAGGCCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	75081300	75066767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081224
13531	chr8	-	2273	11	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.33378808507	34	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615016	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96590972_96591068_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
13532	chr3	-	2448	17	Fusion	ENSMUSG00000015748.14_ENSMUSG00000054312.7	novel	2933	16	NA	NA	43	0	multi-exon	FALSE	canonical	0	0	junction_15	131.645594305317	2	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTATGATATTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	95778788	95737929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95777805_95777928_95778764
13533	chr5	-	2488	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	76	5	76	-5	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	3	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCTCCTTCCTGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	24782389	24770347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
13534	chr13	+	2137	10	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	609.236944317223	19	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588144	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614974
13536	chr18	-	2277	16	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	104	153	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_15	229.162087226972	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGATTAACAACTTTTGACA	163	False	NA	NA	False	NA	NA	NA	10029918	9995440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029763
13537	chr14	+	3692	12	FSM	ENSMUSG00000035469.18	ENSMUST00000043227.13	3903	12	211	0	-37	0	multi-exon	FALSE	canonical	3	265	junction_1	28.7856139459962	236	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	59438887	59474714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
13538	chr1	-	3537	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	54	960	6	-960	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	493	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCTGTTGCTAAACACAT	NA	False	NA	NA	False	NA	NA	NA	79739432	79680938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
13539	chr12	-	2989	19	FSM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	-4	-676	-4	-513	multi-exon	FALSE	canonical	3	128	junction_18	37.2765772285566	436	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATCCCTTCCCCCCTTAC	NA	False	NA	NA	False	NA	NA	NA	84664148	84648750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
13540	chr7	-	1864	19	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	30	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	464.759435980953	2	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33929637	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901814_33901880_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
13541	chr2	+	2155	16	ISM	ENSMUSG00000027642.16	ENSMUST00000127252.8	2314	17	4220	-1	63	1	3prime_fragment	FALSE	canonical	3	2037	junction_7	165.421831153636	1	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157125565	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
13542	chr6	-	3426	13	NNC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	5	18	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	141.475753713804	1072	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAGCCTGCTGTGTTA	867	False	NA	NA	False	NA	NA	NA	51989490	51834383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51836616_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
13545	chr11	-	4266	24	NNC	ENSMUSG00000004040.17	novel	4516	24	NA	NA	49	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	150.964272992741	1	91	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACTGTCTGGCAGTGGG	NA	False	NA	NA	False	NA	NA	NA	100830157	100777645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100779587_100780303_100780417_100780711_100780755_100783899_100784113_100784490_100784631_100784743_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795736_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
13546	chr12	+	2658	15	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	91.2576527403235	13	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157631	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175137_85176565_85176640_85177233_85177318_85177670_85177839_85179392
13547	chr8	+	5012	5	FSM	ENSMUSG00000078908.11	ENSMUST00000035777.10	4998	5	-21	7	-21	-7	multi-exon	FALSE	canonical	3	34	junction_3	4.52769256906871	68	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTACCCTCTCAGCCTC	NA	False	NA	NA	False	NA	NA	NA	114362445	114371804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
13549	chr10	-	2344	7	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	6	3	combination_of_known_splicesites	FALSE	canonical	3	24	junction_5	383.247816548104	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCATTACAGCATTGC	5263	False	NA	NA	False	NA	NA	NA	62322519	62291010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62316336_62316487_62322436
13550	chr5	-	2337	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	31	-1	-6	1	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	16	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGCTTGTCTTTCTGGC	2211	False	NA	NA	False	NA	NA	NA	134668170	134648729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
13551	chr11	+	2072	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	48	544	48	-544	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	100	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACATGTGTGTGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	101207086	101213819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
13552	chr6	-	619	3	FSM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	103	385	0	3	multi-exon	FALSE	canonical	3	1131	junction_2	267.5	4266	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTGGAATGG	NA	False	NA	NA	False	NA	NA	NA	39787819	39779122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_39779479_39782304_39782546_39787797
13553	chr10	-	4049	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	12	831	intron_retention	FALSE	canonical	3	53	junction_4	10.555093557141	243	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACAGCAAAACCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	87982783	87926462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
13554	chr11	-	4073	6	NIC	ENSMUSG00000042032.14	novel	2053	7	NA	NA	11	-12	intron_retention	FALSE	canonical	3	348	junction_5	90.9250240582866	6	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGCATGTAACACTTTGG	NA	False	NA	NA	False	NA	NA	NA	40585803	40570152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40578623_40585629
13555	chr11	-	1126	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTTCCAGTCCCAGGGGA	5960	False	NA	NA	False	NA	NA	NA	120655231	120654105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120654100_120655200
13556	chr9	+	2815	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	48	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	273.680396052902	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGAAATTGCCTCTTAG	5560	False	NA	NA	False	NA	NA	NA	35122498	35128297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127614_35127730
13557	chr4	-	2488	6	Fusion	ENSMUSG00000066000.13_ENSMUSG00000062518.8	novel	2594	5	NA	NA	-50	-8	multi-exon	FALSE	non_canonical	0	0	junction_1	177.832055603032	2	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCACCAATTTTGACTTG	NA	False	NA	NA	False	NA	NA	NA	147787060	147696403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147697663_147697764_147698506_147699736_147699864_147702869_147702956_147725368_147725463_147786879
13558	chr9	-	2692	5	NIC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-113	intron_retention	FALSE	canonical	3	3873	junction_3	399.946480794618	52	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTTATTATTGTAGTAG	NA	False	NA	NA	False	NA	NA	NA	110775162	110768783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110773312_110774891
13559	chr3	-	3354	8	ISM	ENSMUSG00000038975.15	ENSMUST00000196565.5	1775	10	46	-4	8	0	intron_retention	FALSE	canonical	3	607	junction_3	174.269671392778	113	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6162	False	NA	NA	False	NA	NA	NA	153618584	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327
13560	chr10	+	2366	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	85	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	282.338417946479	1	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7075	False	NA	NA	False	NA	NA	NA	60113534	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135678_60135964_60136085_60136316_60136398_60136552_60136661_60137472
13561	chr17	-	4423	15	NIC	ENSMUSG00000024127.16	novel	2734	15	NA	NA	4	1049	combination_of_known_junctions	FALSE	canonical	1	1	junction_14	52.4877050715067	67	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTTTGGTGGACTCTTC	NA	False	NA	NA	False	NA	NA	NA	85397665	85369848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85395871_85397533
13562	chr18	+	2873	18	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	4	-3	intron_retention	FALSE	non_canonical	0	0	junction_16	262.707963427915	1	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	6253	False	NA	NA	False	NA	NA	NA	34758063	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764446_34764986_34765117_34765353
13563	chr3	+	1819	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	689.290553725801	13	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3814	False	NA	NA	False	NA	NA	NA	88204432	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216507_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
13564	chr11	-	1832	7	NIC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	134	-3	intron_retention	FALSE	canonical	3	13069	junction_3	651.571284579737	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTTTGGGCTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	69561575	69557765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440
13565	chr17	-	132	1	Intergenic	novelGene_159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGACGCCGCGGCTTTCG	NA	False	NA	NA	False	NA	NA	NA	36542501	36542369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_36542400_36542500
13567	chr8	+	2498	19	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	7	158	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	271.434512257459	14	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTATTTTTAGTTTCAAG	NA	False	NA	NA	False	NA	NA	NA	69246672	69280311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271586_69271649_69271939_69272020_69273306_69273470_69274808_69274903_69276841_69276920_69279928
13569	chr6	-	2148	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1769.28963216008	4304	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9290	False	NA	NA	False	NA	NA	NA	128415619	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411413_128411750_128411836_128412676_128412820_128413532_128413678_128415368
13570	chr5	+	2267	17	Antisense	novelGene_ENSMUSG00000029472.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGTTTCCCACAGTAG	NA	False	NA	NA	False	NA	NA	NA	122925911	122959337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_122926082_122926364_122926528_122929670_122929819_122929889_122929997_122931498_122931622_122932479_122932554_122937400_122937542_122938516_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945464_122952610_122952679_122955883_122956066_122956914_122957027_122957670_122957753_122959044
13571	chr3	+	2293	14	NIC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	7	1	intron_retention	FALSE	canonical	3	506	junction_13	202.563774748193	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	34093689	34123487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34093729_34095211_34095306_34100180_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
13572	chr5	-	2496	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	203	3	203	-3	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCAAGGCTGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	34817289	34795882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
13573	chr10	+	4479	2	ISM	ENSMUSG00000038587.11	ENSMUST00000215696.2	5931	3	6687	-1	6687	1	3prime_fragment	FALSE	canonical	3	1663	junction_1	0	1	180	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGTTTTTTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	4304454	4309471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_4307940_4308477
13574	chr2	-	4439	18	NNC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.2180887702843	1	137	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGGGAGGTCTG	NA	False	NA	NA	False	NA	NA	NA	84481107	84431131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84431453_84432320_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444357_84445443_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
13576	chr12	+	2234	9	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	29	-57	intron_retention	FALSE	canonical	3	5416	junction_8	460.290244709792	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758268	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761802_24762659_24762765_24762859_24762974_24763078
13577	chr7	+	2891	9	NIC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	10	-17	intron_retention	FALSE	canonical	3	1130	junction_6	73.0358430840639	451	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAGAGGCCATGCCAAC	NA	False	NA	NA	False	NA	NA	NA	15832542	15851883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15847115_15847274_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
13578	chrX	-	2589	4	NIC	ENSMUSG00000031167.17	novel	1055	7	NA	NA	0	246	intron_retention	FALSE	canonical	3	925	junction_2	159.216833280907	18	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTAAGTTTGCTTT	6561	False	NA	NA	False	NA	NA	NA	8011936	8008351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009991_8010086_8010187_8010811_8010919_8011193
13579	chr10	-	1017	4	FSM	ENSMUSG00000020077.15	ENSMUST00000160987.8	1727	4	42	668	16	-73	multi-exon	FALSE	canonical	2	4	junction_3	6.34209919681348	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCGCATTGTGAATTACAAA	NA	False	NA	NA	False	NA	NA	NA	62363188	62330279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62330886_62333557_62333703_62343420_62343616_62363117
13581	chr17	+	2882	15	NIC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-24	-10	combination_of_known_splicesites	FALSE	canonical	1	28	junction_12	460.484643764433	1	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTTGTACATTGGGGGT	4847	False	NA	NA	False	NA	NA	NA	87979943	88031131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026715_88026964_88028310_88028487_88030758
13582	chr1	+	3596	7	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	-4229	-5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	73.5904583186948	68	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATCAGTGTGTTGCTCG	NA	False	NA	NA	False	NA	NA	NA	82312540	82423082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82312703_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
13583	chr10	-	2706	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	67	957	-4	-957	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	1	25	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTCACTGGGACAACATG	NA	False	NA	NA	False	NA	NA	NA	77845574	77823737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
13584	chr9	+	4553	18	FSM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	74	0	-42	0	multi-exon	FALSE	canonical	3	262	junction_7	34.4140270749526	471	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCATCCTTATGTGTG	1847	False	NA	NA	False	NA	NA	NA	21634852	21661215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
13585	chr9	-	3689	7	NNC	ENSMUSG00000032470.18	novel	4701	6	NA	NA	408	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	188.839217325216	274	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCTGCCTTATTTCCTCT	4102	False	NA	NA	False	NA	NA	NA	99318571	99267474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_99268913_99269059_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318362
13586	chr9	+	2703	8	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	203.506305372906	2	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGCTGTGTCTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	77824640	77891796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884148_77887131_77887232_77888755_77888891_77889946
13587	chr1	-	2670	2	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-75	0	intron_retention	FALSE	canonical	3	6646	junction_1	0	10	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16174526	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16173054_16173391
13590	chr13	+	2625	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-4	1695	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	31.3840723934929	1	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCTAATATCTATCCT	NA	False	NA	NA	False	NA	NA	NA	62277742	62322928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62318963_62319241_62320163_62320921_62321007_62321980_62322536
13593	chr15	+	4832	12	FSM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	-5	2092	-5	-2092	multi-exon	TRUE	canonical	3	477	junction_6	48.3699585751527	386	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTGTTACATTCTCTG	47	False	NA	NA	False	NA	NA	NA	34082859	34143678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
13594	chrUn_JH584304v1	-	2669	6	Intergenic	novelGene_4696	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	124	junction_3	296.852421246652	3	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTCAGGGGTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	59667	53394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_55702_56985_57152_57410_57500_58563_58836_59591
13595	chr16	-	2084	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	-5	14	-5	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	3	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTAAAAAAAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975445	45973361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
13597	chr4	+	2974	13	NNC	ENSMUSG00000028252.21	novel	3484	13	NA	NA	220	-440	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	166.158725988803	3	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTGTGAGCATCTTTA	227	False	NA	NA	False	NA	NA	NA	21727986	21750106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21728132_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482_21747577_21748136
13598	chr11	-	2101	12	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1215.7927522933	1	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106679161
13599	chr5	-	2320	17	NNC	ENSMUSG00000029472.14	novel	2404	17	NA	NA	-10	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	589.365571902321	3	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTTTTTTTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	122959367	122925781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122956975_122957724_122957751_122959042
13600	chr11	+	2330	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	3	-2	3	0	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	1977	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATCTGATTTGTTGCGC	4141	False	NA	NA	False	NA	NA	NA	102321150	102327635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
13602	chr3	+	1910	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	3	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	686.441833320599	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAGTCATTTGAGACCG	3817	False	NA	NA	False	NA	NA	NA	88204435	88229059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204535_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
13603	chr5	+	3181	8	NIC	ENSMUSG00000079562.8	novel	2193	9	NA	NA	0	-5	intron_retention	FALSE	canonical	3	507	junction_4	38.9568049647456	15	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTGTGAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	33492908	33530635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33529154_33529610
13604	chrX	-	4155	9	ISM	ENSMUSG00000031297.15	ENSMUST00000138162.2	2717	11	109	14	56	-2	intron_retention	FALSE	canonical	3	1326	junction_3	67.5341348874775	2	147	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GTAAAAAAAAAACCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100128902	100122829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753
13605	chr10	-	2554	12	Antisense	novelGene_ENSMUSG00000019970.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACCAAGTGTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	21875792	21854612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_21854880_21870864_21870940_21871370_21871448_21871691_21871796_21871922_21872007_21872119_21872252_21872455_21872569_21872875_21873000_21873238_21873334_21873793_21873953_21874058_21874147_21874556
13608	chr15	-	2632	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-77	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	711.346005041772	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283872	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249327_81249669_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
13610	chr2	+	3610	12	FSM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	50	5	-24	-5	multi-exon	FALSE	canonical	3	194	junction_8	15.0382432594562	618	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTCTGAAAAGTGGATG	NA	False	NA	NA	False	NA	NA	NA	118692484	118713385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
13611	chr3	-	1679	14	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	5650	16569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTACCGGACGAAAGATAA	NA	False	NA	NA	False	NA	NA	NA	32781112	32762976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32763028_32766014_32766092_32766247_32766424_32768664_32768766_32769563_32769663_32772179_32772273_32772514_32772624_32772715_32772804_32774047_32774112_32774334_32774448_32774581_32774665_32776768_32776865_32779395_32779481_32780668
13612	chr3	+	1841	6	NNC	ENSMUSG00000027500.11	novel	2073	5	NA	NA	19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	735.816118333922	6903	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAACGGTTTGGTCTGGTC	NA	False	NA	NA	False	NA	NA	NA	8574593	8626664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325_8626079_8626134
13613	chr2	+	2670	16	NNC	ENSMUSG00000027067.17	novel	2721	17	NA	NA	5	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	612.173272493626	1	76	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTTATGTCTCCTTTCCC	NA	False	NA	NA	False	NA	NA	NA	84867803	84877457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84874656_84874793_84875753_84875929_84876040_84876117_84876596_84876784_84876989
13615	chrX	+	3256	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_9	160.572169094159	584	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	NA	False	NA	NA	NA	158315686	158376077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349452_158350914_158351011_158357940_158358094_158375066
13616	chrX	-	2478	8	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	79	-7	intron_retention	FALSE	canonical	3	1120	junction_6	118.975044545021	43	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGAACTTGGCCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	72830424	72822575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72826323_72830380
13618	chr4	+	4266	25	NNC	ENSMUSG00000045751.17	novel	4478	24	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	87.496180472191	146	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTCTGTGAATATTTA	2	True	NA	NA	False	NA	NA	NA	24496468	24602950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_24496635_24496831_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580050_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
13619	chr18	+	3332	17	NNC	ENSMUSG00000024614.8	novel	4611	16	NA	NA	3	-1063	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	53.2699126501067	24	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTTTCTTTTTGAGGAT	4795	False	NA	NA	False	NA	NA	NA	90528330	90560328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062_90558496_90558658
13620	chr11	-	2234	12	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1218.75732674212	1	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAATAAAAGATATTTGAAG	9654	False	NA	NA	False	NA	NA	NA	106679320	106672397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106677055_106677186_106677273_106677371_106677734_106677901_106679098
13621	chr11	-	1974	10	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	-47	0	intron_retention	FALSE	non_canonical	0	0	junction_1	4323.85797382127	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	69562095	69557761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558051_69558351_69558444_69558520_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753
13622	chr5	+	1804	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	325	353	-145	-161	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	7	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTCTGTATAGTCACTGT	611	False	NA	NA	False	NA	NA	NA	77099478	77114999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
13623	chr2	+	2817	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-2	-1413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	54.4151258122203	2	67	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTTTATACAACCCTCA	NA	False	NA	NA	False	NA	NA	NA	152068830	152122359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152076831_152076928_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
13625	chrX	+	3057	14	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	2	-4	intron_retention	FALSE	canonical	0	0	junction_12	958.821459770262	1	92	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTTTGAATTTGCTTTT	NA	False	NA	-2	True	NA	NA	NA	74139722	74153379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151786_74151911_74152301
13626	chr8	+	2603	22	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	257.116533044116	403	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	94941209	95041488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027524_95028784_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
13629	chrX	-	3187	7	NNC	ENSMUSG00000006423.16	novel	3340	7	NA	NA	27	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	87.3430338124086	2	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAACTAGCTTGTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	36127864	36112200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36117969_36120511_36120547_36127276_36127395_36127661
13630	chr16	-	3510	17	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.108184274931	2	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2600	False	NA	NA	False	NA	NA	NA	21981722	21877758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879358_21879419_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
13631	chr8	+	2441	12	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	322.403858435169	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTCTGTGTTTCT	2103	False	NA	NA	False	NA	NA	NA	13388750	13428441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420584_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
13632	chr16	-	2570	12	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	49	21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	288.946075783603	4	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTATAGAAAAGACTACTAT	6315	False	NA	NA	False	NA	NA	NA	38370535	38345477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38345953_38346076_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
13633	chr4	-	5918	6	NIC	ENSMUSG00000028923.15	novel	1906	8	NA	NA	-17	-13	intron_retention	FALSE	canonical	3	431	junction_1	29.2479059079449	4	110	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGCACCACATCTCAGA	8531	False	NA	NA	False	NA	NA	NA	140805622	140793835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_140794924_140795505_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
13634	chr12	+	3005	7	NNC	ENSMUSG00000020605.10	novel	2959	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	51.6881675692481	885	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGTGTTGTTCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	8363431	8393824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8363498_8367784_8367997_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
13635	chr6	+	2753	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	41	435	28	111	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGGAGACCAGAGATAAT	-6	True	NA	NA	False	NA	NA	NA	29348145	29376239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
13636	chr2	-	2291	12	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	21	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	173.550526141429	42	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	103315449	103284346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285167_103285422_103285520_103290604_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
13638	chr4	-	4603	16	NIC	ENSMUSG00000041936.19	novel	7193	35	NA	NA	29	0	intron_retention	FALSE	canonical	3	246	junction_14	73.3746550247427	363	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGACTGTGTTTGTACTT	NA	False	NA	NA	False	NA	NA	NA	156258158	156249746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459
13639	chr10	-	3840	19	NIC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	6	-692	intron_retention	FALSE	canonical	1	1	junction_18	52.8164770399691	1	86	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAACTTTGAGTTTCCGG	NA	False	NA	NA	False	NA	NA	NA	78020977	78007434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78020904
13640	chr16	-	6916	8	NIC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	-8	2783	intron_retention	FALSE	canonical	3	182	junction_5	79.0564252122934	160	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGTTGACAGATTTAAGG	NA	False	NA	NA	False	NA	NA	NA	20245093	20214783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20215879_20217562_20217711_20218224_20218399_20218555_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
13642	chr7	-	1919	19	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.759435980953	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33929747	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901746_33901867_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
13643	chr2	+	2883	10	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_7	778.94607493351	2	93	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATAGTATGTGTGTATT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130119241_130119330_130119545_130119768_130119891_130120075
13644	chr11	-	686	7	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	-7834	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	278.26690824139	296	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAACAACTTAGAAACGG	9883	False	NA	NA	False	NA	NA	NA	55300825	55285346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55285432_55290013_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753
13645	chr11	-	2977	7	NNC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.650707657592	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	40646099	40639378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40640378_40640873_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
13649	chr15	+	949	2	FSM	ENSMUSG00000033020.8	ENSMUST00000229762.2	509	2	-278	-162	-278	1	multi-exon	FALSE	canonical	3	2023	junction_1	0	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCCCTCTCCCCGTTACC	3887	False	NA	NA	False	NA	NA	NA	79034835	79035965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79035608_79035788
13650	chr16	+	3583	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-4	384	combination_of_known_junctions	FALSE	canonical	3	139	junction_4	93.7257618290721	92	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTGGCTAATAATTAACA	NA	False	NA	NA	False	NA	NA	NA	29398205	29468202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754
13651	chr1	-	3599	20	NNC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	-26	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	57.2175708634373	2	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCATTTTGCTTTTCCGT	NA	False	NA	NA	False	NA	NA	NA	151299332	151243454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151280154_151280254_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257
13652	chr6	+	3956	9	NIC	ENSMUSG00000030204.11	novel	1764	12	NA	NA	0	-6	intron_retention	FALSE	canonical	3	514	junction_8	27.321866242993	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTACCTGTGTGTGTCTG	6588	False	NA	NA	False	NA	NA	NA	134988588	135000729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134993617_134994083_134995161_134995936_134996075_134997578_134998542_135000241
13653	chr11	-	2285	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	-5	41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	565.366298874556	3	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATTAGCCTTCATAATA	NA	False	NA	NA	False	NA	NA	NA	75239126	75191134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191366_75191984_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205644_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
13654	chrX	+	2837	6	Antisense	novelGene_ENSMUSG00000031387.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGACCGAGCAGTGTCCC	7900	False	NA	NA	False	NA	NA	NA	72965732	72974400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72965872_72965958_72966045_72969821_72970307_72971228_72971594_72971883_72971967_72972721
13655	chr16	+	2419	11	NIC	ENSMUSG00000022841.16	novel	2937	12	NA	NA	7	-11	intron_retention	FALSE	canonical	3	317	junction_4	750.589828068566	97	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCCAGACTTTGTTTTG	1401	False	NA	NA	False	NA	NA	NA	20354275	20362795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359564_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
13656	chr17	+	4012	29	ISM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	308	-4	-22	4	3prime_fragment	FALSE	canonical	0	0	junction_11	424.60875598987	459	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGCTCTTGTCTGTGTGGT	9782	False	NA	NA	False	NA	NA	NA	35220270	35235302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
13657	chr2	+	314	1	FSM	ENSMUSG00000082580.4	ENSMUST00000122241.2	312	1	134	-136	134	136	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1184	False	NA	NA	False	NA	NA	NA	3551927	3552241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_3551900_3552200
13658	chrX	+	2818	9	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-33815	-587	combination_of_known_junctions	FALSE	canonical	3	247	junction_5	18.4454432042171	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATAACAAATTGAAATT	NA	False	NA	NA	False	NA	NA	NA	84187726	84248058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
13659	chr9	+	3454	10	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-155	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	124.399992060656	27	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAAAAGCCTTGTTCCACG	NA	False	NA	NA	False	NA	NA	NA	110780457	110813127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110780599_110786867_110787025_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697_110812423_110812637
13661	chr9	-	3363	8	FSM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	-34	2	-27	-2	multi-exon	FALSE	canonical	3	127	junction_2	22.0352222681815	272	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGATGTGATTCATGA	-54	True	NA	NA	False	NA	NA	NA	7837092	7818229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
13662	chr12	-	3069	9	Antisense	novelGene_ENSMUSG00000032705.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGGGCGCACCCACCCG	NA	False	NA	NA	False	NA	NA	NA	80544815	80509988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_80510051_80522492_80522961_80527268_80527485_80531018_80531150_80536178_80536501_80537548_80537660_80537866_80538004_80539314_80539683_80543561
13663	chr2	-	2001	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	35	2162	35	-2162	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	53	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATCTCTCACTCCAGGC	NA	False	NA	NA	False	NA	NA	NA	121337111	121324553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
13665	chr16	-	3312	18	FSM	ENSMUSG00000012114.18	ENSMUST00000012259.9	3410	18	68	30	1	-20	multi-exon	FALSE	canonical	3	173	junction_13	36.2216360814255	10	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTTATTATTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	17540743	17469104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
13666	chr8	-	2165	15	NNC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	532.165987033277	54	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737920	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720335_112720611_112720808_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
13667	chr15	+	2516	10	NNC	ENSMUSG00000022407.11	novel	1595	12	NA	NA	1	1031	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	486.74907977999	1	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGAACATCATCATGGCA	NA	False	NA	NA	False	NA	NA	NA	80832713	80851355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846979_80847860_80847931_80848080_80849143_80849780_80850384_80851312
13668	chr3	-	4402	5	Antisense	novelGene_ENSMUSG00000047213.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCGCAGTTCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	16270336	16237353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_16237699_16241125_16241280_16243641_16243725_16257986_16259588_16268117
13669	chr1	+	1978	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	57	657	-19	-657	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	334	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCTAAGAAGGAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	66740046	66758307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
13670	chr5	-	2460	13	NIC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	79	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_12	216.900690921496	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92582537	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582080_92582243_92582370
13671	chr15	+	3421	15	NIC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	10	-7	intron_retention	FALSE	canonical	0	0	junction_11	509.918285770637	2	133	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTAATGTTCTGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	81756694	81799327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81796086_81796210_81796406_81796563_81797306_81798561_81798828
13672	chr16	-	2291	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	2	2	2	-2	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	2231	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTGGTCTTATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	55850100	55835870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
13673	chr11	-	1861	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	39	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.228520068743	15	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5240	False	NA	NA	False	NA	NA	NA	88846252	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815406_88820039_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
13675	chr10	-	4206	19	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	141	-3	intron_retention	FALSE	canonical	3	26	junction_8	84.611694752492	1	95	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGCTTTGCTGATTGGT	NA	False	NA	NA	False	NA	NA	NA	61219168	61155437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178937_61179406_61179513_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
13676	chr5	+	2356	1	Antisense	novelGene_ENSMUSG00000029655.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	813	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCCCAGGAACCTTGGC	5167	False	NA	NA	False	NA	NA	NA	150571692	150574048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_150571700_150574000
13677	chr11	-	3311	11	NNC	ENSMUSG00000025162.19	novel	3500	10	NA	NA	-8	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	221.562180888346	331	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTTCCCTCCCCTTTG	1047	False	NA	NA	False	NA	NA	NA	120881885	120852579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120853762_120853912_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
13678	chr6	+	2512	18	NNC	ENSMUSG00000025609.16	novel	11395	18	NA	NA	-13	-8	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	171.308499719438	52	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATTTAATTATGTATAT	NA	False	NA	NA	False	NA	NA	NA	31375749	31484895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_31375890_31395865_31395984_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
13679	chr16	+	4071	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	102	5	-12	-5	multi-exon	FALSE	non_canonical	1	193	junction_4	108.324454764379	1	109	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTCGATAAAGGTAACTGAA	1076	False	NA	NA	False	NA	NA	NA	93629110	93672955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
13680	chr19	-	1956	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	413	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1174.31456342734	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15898360	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884419_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299
13681	chr2	-	1329	4	ISM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	2367	4	1878	1	3prime_fragment	FALSE	canonical	3	1561	junction_3	60.7014552269274	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGTGTGCTGTGTGTGT	1967	False	NA	NA	False	NA	NA	NA	155666478	155661755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784
13683	chr4	+	5014	14	NIC	ENSMUSG00000042408.14	novel	4210	15	NA	NA	5	0	intron_retention	FALSE	canonical	3	69	junction_3	8.41103811251486	109	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTTTATGTTGGTGATT	2749	False	NA	NA	False	NA	NA	NA	126971180	127018165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126972340_126980767_126980835_126982121_126982348_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
13684	chr18	-	4465	17	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	-3	-34	combination_of_known_splicesites	FALSE	canonical	3	10	junction_14	47.0558179187229	5	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAATAACAAAACCAGTAA	3	True	NA	NA	False	NA	NA	NA	6135944	6024460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6111684_6112440_6115813_6115851_6135803
13685	chr9	+	4069	19	NIC	ENSMUSG00000038535.18	novel	4200	21	NA	NA	5	7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	16.7473049241429	1	55	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTCAGATTCCTGTTT	NA	False	NA	NA	False	NA	NA	NA	72182267	72271050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72267567_72267624_72269215
13686	chr9	+	4577	14	Antisense	novelGene_ENSMUSG00000032405.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGCAAGCGCAATGAAGCT	2118	False	NA	NA	False	NA	NA	NA	62785647	62888165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_62788544_62792051_62792094_62794591_62794733_62799407_62799591_62800411_62800540_62803110_62803274_62810040_62810115_62820031_62820138_62826632_62826764_62827732_62827829_62830560_62830610_62830851_62830944_62859041_62859488_62888135
13687	chr14	-	3737	11	NNC	ENSMUSG00000022003.8	novel	3588	10	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	17.1933126534708	287	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCTTACAGTCATTTTG	NA	False	NA	NA	False	NA	NA	NA	76024445	75997553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76013551_76013730_76014435_76014567_76024364
13688	chrX	-	4063	11	NIC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	-13	-12	intron_retention	FALSE	canonical	3	852	junction_3	60.377230807648	33	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATAAACAGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	95000505	94978952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94991462_94993942_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
13689	chrX	-	2562	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.794742517923	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231296	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085653_23086302_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
13690	chr18	+	2937	18	NIC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	-8	-17	intron_retention	FALSE	canonical	3	450	junction_6	91.4889143737491	8	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTAGTTAAACCTGCTG	NA	False	NA	NA	False	NA	NA	NA	36877766	36890670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
13691	chr12	+	2271	7	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	14	-54	intron_retention	FALSE	canonical	3	5416	junction_6	519.358471792097	14	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758764	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
13692	chr6	-	2234	7	NIC	ENSMUSG00000079477.10	novel	1657	8	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	3	112	junction_6	799.58419749823	3328	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGCTGTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	88022242	87976089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
13693	chr13	+	3110	6	Intergenic	novelGene_1391	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	76.4366404285275	40	17	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGGGATTAAAGGCGTG	NA	False	NA	NA	False	NA	NA	NA	61919374	62149516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_61919514_61928416_61928544_61928736_61928798_61933782_61934985_61939162_61940206_62148978
13695	chr11	-	2102	12	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1866.41401871509	3	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673469_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676119_106676218_106676363_106676892_106676959_106677051_106677104_106677730_106677901_106679098
13696	chr5	+	2139	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	1057.95446703579	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	294	False	NA	NA	False	NA	NA	NA	77099161	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099279_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
13697	chr6	-	1968	7	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	940.227100226323	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294588	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83288187_83288345_83288793_83288917_83290343_83290529_83294410
13698	chr17	-	3599	22	NNC	ENSMUSG00000024135.11	novel	3530	21	NA	NA	30	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	29.0067628364393	174	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGGTGTGCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	86452573	86292095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86451038_86451141_86452548
13700	chr19	-	2008	13	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	4262	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	939.979417623362	4	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTACGGTCTCCAGTGACT	8025	False	NA	NA	False	NA	NA	NA	7013073	6998071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012147_7012863
13701	chr12	+	2121	17	NIC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	15	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	209.643298247285	1	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGGGGTGCCTGTTTACT	NA	False	NA	NA	False	NA	NA	NA	21336414	21364834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
13703	chr18	+	4282	5	FSM	ENSMUSG00000034300.18	ENSMUST00000097622.4	4256	5	-4	-22	-4	0	multi-exon	FALSE	canonical	3	31	junction_2	5.02493781056044	162	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGTACGATAGTGTCT	5083	False	NA	NA	False	NA	NA	NA	34892604	34906813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650
13704	chr4	+	3033	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	115	4	-11	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	808	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9687	False	NA	NA	False	NA	NA	NA	155648271	155675454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
13705	chr11	-	3380	13	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	3	1363	intron_retention	FALSE	canonical	3	937	junction_6	76.8009693225866	2255	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATTCAAAAGCAAT	4518	False	NA	NA	False	NA	NA	NA	6217743	6207555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
13706	chr11	+	1937	15	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-42	186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1383.01914082111	5	25	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940583	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940780_22940818_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
13707	chr13	-	2531	3	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	473	0	-473	intron_retention	FALSE	canonical	3	476	junction_2	10	22	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_34312515_34312854_34312966_34313228
13708	chr8	+	2690	14	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	448.915379277074	226	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2139	False	NA	NA	False	NA	NA	NA	13388786	13428448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13407042_13407110_13412268_13412378_13415088_13415196_13419458_13419581_13420168_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
13709	chr9	-	2220	10	Antisense	novelGene_ENSMUSG00000105962.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGGCCGCTTCCTCGTCG	5735	False	NA	NA	False	NA	NA	NA	109896609	109760886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_109761007_109807915_109808158_109828837_109828907_109855166_109855289_109856742_109856860_109861165_109861299_109863437_109864573_109865807_109865919_109892077_109892190_109896550
13711	chr1	-	1846	12	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	2216	5776	1785	0	3prime_fragment	FALSE	canonical	3	5903	junction_8	870.888621888894	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86284906	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
13713	chr19	-	3789	26	NNC	ENSMUSG00000039901.11	novel	3676	26	NA	NA	4908	-16	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_25	35.5729335309867	158	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGATTTGTGTGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	45982019	45805818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45981817
13714	chr5	-	2628	8	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-15	0	intron_retention	FALSE	canonical	3	230	junction_2	361.872849470188	2512	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185841_100186578
13715	chr1	+	4759	9	NNC	ENSMUSG00000025958.15	novel	1260	9	NA	NA	0	1028	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	30.6624770688867	7	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGCCACTTCAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	64571990	64641444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392_64636803_64638131
13716	chr3	+	1373	5	ISM	ENSMUSG00000001016.13	ENSMUST00000198738.5	1373	6	883	-124	873	124	3prime_fragment	FALSE	canonical	3	1368	junction_4	28.6006992921502	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGAGTAAGCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	90384336	90389782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670
13717	chr3	+	1893	5	NNC	ENSMUSG00000001016.13	novel	1702	13	NA	NA	2146	3	intron_retention	FALSE	non_canonical	0	0	junction_2	597.996394219898	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	90390131	90395273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90390150_90391760_90392428_90393795_90394405_90394533_90394625_90394765
13718	chr10	-	3487	9	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-8	102	intron_retention	FALSE	canonical	3	1924	junction_2	91.1824236078423	3	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCAGAATTTGTAGCTG	NA	False	NA	NA	False	NA	NA	NA	127358241	127353499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206
13719	SIRV7	-	2229	6	NNC	SIRV7A	novel	2462	5	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1670.53363929015	5	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGTAATTAGTGTTAATAT	NA	False	NA	NA	False	NA	NA	NA	147923	1008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1753_1980_2676_2993_3112_43028_43078_114680_114989_147608
13720	chr11	+	2982	12	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	-249	-6	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	514.270726529606	517	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCAGACCCTGGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	101206789	101214357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101207315_101207846_101207922_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
13721	chr16	+	1994	10	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-15	-156	intron_retention	FALSE	non_canonical	0	0	junction_4	884.741826051777	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTTGCTGGCTAAA	1379	False	NA	NA	False	NA	NA	NA	20354253	20362650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360842_20360946_20361045_20361388_20361501_20362060
13723	chr17	-	2939	11	NNC	ENSMUSG00000025728.17	novel	3233	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	86.4627665530082	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	26160909	26145400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150683_26151074_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
13724	chr2	+	3210	14	NNC	ENSMUSG00000027242.15	novel	4170	13	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	15.000197237362	22	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121337218	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121373740_121374759
13725	chr3	+	3924	8	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	32	-23	intron_retention	FALSE	canonical	3	7	junction_4	553.519610477961	54	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACATGATTTTTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	97066124	97083867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97075890_97078957_97079059_97080399_97080554_97081118_97081215_97082943_97083110_97083646
13726	chr7	+	5089	34	FSM	ENSMUSG00000032812.19	ENSMUST00000107010.9	5147	34	58	0	58	0	multi-exon	FALSE	canonical	3	35	junction_3	24.8085044217444	100	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGAGGCCTGTGATG	NA	False	NA	NA	False	NA	NA	NA	100997331	101061101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100997407_101016227_101016306_101022162_101022709_101034068_101034248_101034758_101034824_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
13727	chr12	+	3899	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	101	-2280	101	2280	multi-exon	FALSE	canonical	3	317	junction_1	0	1	131	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAACGGTCTATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	57277298	57288948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_57277398_57285148
13729	chr15	+	1930	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-15	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	508.882346967897	1343	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959432	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962368_78963159_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
13730	chr2	+	3550	14	NNC	ENSMUSG00000027242.15	novel	4170	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	18.2046226004185	1	72	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121337235	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337330_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374114_121374761
13731	chr10	+	5421	10	NNC	ENSMUSG00000001786.15	novel	5388	9	NA	NA	-84	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	80.0888395609664	662	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATTTACAATGGCCCTA	NA	False	NA	NA	False	NA	NA	NA	85857751	85887732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585_85887173_85887218
13732	chr5	+	2950	19	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	166.395520179488	1	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCATCATTCCTATACTC	NA	False	NA	NA	False	NA	NA	NA	45827266	45857460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838720_45838798_45839068_45839168_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
13734	chr19	+	3533	11	NNC	ENSMUSG00000024976.15	novel	3664	9	NA	NA	-237	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	180.501966748288	8	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGAGCTTGTGTGTGTG	3121	False	NA	NA	False	NA	NA	NA	53932499	54021558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53932834_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498_54020652_54021237_54021439_54021480
13735	chr13	-	2981	15	Antisense	novelGene_ENSMUSG00000041236.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGTCTAGGTCTTGCA	NA	False	NA	NA	False	NA	NA	NA	19046949	19011807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_19013509_19014906_19014961_19022815_19022877_19023810_19023900_19025327_19025421_19026321_19026451_19027638_19027782_19029475_19029520_19030056_19030107_19033054_19033190_19036506_19036562_19037512_19037658_19038694_19038830_19046701_19046805_19046905
13736	chr7	-	4591	2	NIC	ENSMUSG00000044702.14	novel	3216	4	NA	NA	2	-2086	intron_retention	FALSE	canonical	3	144	junction_1	0	10	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAACTCTAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	121732138	121726890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121728240_121728896
13739	chr8	-	4098	14	Genic_Genomic	ENSMUSG00000098184.2	novel	972	1	NA	NA	-77316	-919	multi-exon	FALSE	non_canonical	0	0	junction_1	0	642	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTCGCGAGAGAAGCAGC	NA	False	NA	NA	False	NA	NA	NA	122754700	122677331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_122677387_122701164_122701302_122702635_122702729_122705291_122705493_122716692_122716811_122718266_122718441_122723776_122724019_122727702_122727869_122732288_122732422_122733829_122733900_122734489_122734527_122747253_122747379_122750736_122750882_122752298
13740	chr2	+	2238	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-4	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	952.67892749283	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGATAGTATGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	130116370	130121221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119289_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
13741	chr13	+	3232	11	NNC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	-3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	272.446692033506	1	95	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAATATTTCAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120151994	120169609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165957_120166068_120166592_120166719_120166883_120167035_120167964
13742	chr1	+	4060	14	NIC	ENSMUSG00000026192.14	novel	2845	16	NA	NA	-2	-227	intron_retention	FALSE	canonical	3	576	junction_4	31.6377424220207	5	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTGTGGTTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	71596335	71618563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71617101_71617710
13744	chr14	-	2174	11	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11269	19814	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCAAGGGTTGGGAGGTG	NA	False	NA	NA	False	NA	NA	NA	19861854	19841604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19841717_19847228_19847349_19848461_19848712_19852403_19852630_19853118_19853287_19855365_19855493_19855907_19856081_19857992_19858151_19860045_19860170_19861019_19861133_19861251
13745	chr2	-	3671	12	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	2764	0	combination_of_known_splicesites	FALSE	canonical	3	120	junction_7	20.0289047327453	304	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGTATGTTATTGGA	NA	False	NA	NA	False	NA	NA	NA	155279939	155232584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735_155274859_155275852_155276009_155279779
13746	chr3	-	3019	16	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	-3	intron_retention	FALSE	canonical	1	178	junction_5	103.251279249541	28	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGGCTGTGCCTTCATC	NA	False	NA	NA	False	NA	NA	NA	95662183	95647290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658943_95660318_95660443_95661630_95661828_95662069
13748	chr14	-	5069	12	NNC	ENSMUSG00000035078.7	novel	2570	10	NA	NA	287	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.467814354144	191	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTGCCGTATGGAATCT	NA	False	NA	NA	False	NA	NA	NA	63781144	63757105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63759071_63760056_63761028_63761075_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
13749	chr6	-	3116	19	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	218.799981944162	4	50	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	-20	True	NA	NA	False	NA	NA	NA	6217094	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6160054_6160131_6180970_6181114_6191263_6191318_6216995
13750	chr1	+	4465	11	NNC	ENSMUSG00000026349.15	novel	4511	10	NA	NA	82	-51	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_6	182.04296196228	1	114	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAATTCTTTACAATGAC	NA	False	NA	NA	False	NA	NA	NA	127701982	127733618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725369_127725457_127725577_127725624_127727126_127727291_127729342_127729414_127729898_127731031_127731128
13751	chr9	+	2433	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	154.189300097803	1	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGGCGTCTCTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	108385256	108393133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387543_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391190_108391276_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
13752	chr3	+	2701	9	NNC	ENSMUSG00000027852.15	novel	1749	9	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.424222925088	21	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTGTATTTTCCCTA	NA	False	NA	NA	False	NA	NA	NA	102965654	102975219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102971877_102972834_102973329_102974074
13753	chr5	-	2367	13	NNC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	12	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	249.419478767976	4	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92582938	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576184_92578659_92578813_92578897_92578982_92582080_92582243_92582862
13754	chr15	+	2327	15	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-5997	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	523.582230447918	1	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCTGAGTGATTGATGT	1170	False	NA	NA	False	NA	NA	NA	81773509	81799337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81773636_81779370_81779630_81783329_81783390_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
13755	chr5	+	2155	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	416	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1535.87312253347	4	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864477	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867654_129867756_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
13756	chr3	-	3815	5	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	153	0	intron_retention	FALSE	canonical	3	2142	junction_3	34.2855654758675	105	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	NA	False	NA	NA	NA	54641581	54636098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54639448_54639532_54640167_54641078_54641153_54641523
13757	chr2	+	2014	14	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	17	-725	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1478.7907942024	1132	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTGCCCCCTTTATA	NA	False	NA	NA	False	NA	NA	NA	121244380	121268443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121245000_121245095_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
13759	chr7	+	1350	2	NIC	ENSMUSG00000025726.12	novel	2846	18	NA	NA	53954	-2	intron_retention	FALSE	canonical	3	129	junction_1	0	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTTGTGTGTACAGTG	NA	False	NA	NA	False	NA	NA	NA	80818551	80820162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_80819027_80819287
13760	chr3	-	3238	5	NIC	ENSMUSG00000038975.15	novel	1992	8	NA	NA	3	-23	intron_retention	FALSE	canonical	3	638	junction_3	167.204029556707	6	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATTTAAATAAAGGTCAAA	6157	False	NA	NA	False	NA	NA	NA	153618589	153612952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153615236_153615700_153616526_153617561
13761	chr13	-	3138	16	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	-1	-79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	71.9837636013999	3	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCTTCGTCTCTGATGA	NA	False	NA	NA	False	NA	NA	NA	119545534	119472062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511266_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119545438
13762	chr9	-	3140	17	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	5	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	96.5763744077712	1	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTTATGGAGACTTT	6419	False	NA	NA	False	NA	NA	NA	44272926	44259393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265327_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271244_44272516_44272607_44272761
13763	chrX	+	3164	23	FSM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	61	2	-10	0	multi-exon	FALSE	canonical	3	156	junction_9	42.2862392872416	503	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTATTTCCGAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	133208893	133263386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
13765	chr10	+	2565	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	68	293	-8	-293	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAAGTAAGAGCCCATAG	NA	False	NA	NA	False	NA	NA	NA	128173670	128198055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
13766	chr1	+	2888	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	121.367631767355	83	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9760	False	NA	NA	False	NA	NA	NA	175708353	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720538_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
13768	chr2	+	1353	8	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	17998	1435	-2060	554	3prime_fragment	FALSE	canonical	3	2736	junction_2	181.124942782487	2	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTCCAGCCACACATCT	NA	False	NA	NA	False	NA	NA	NA	162914604	162925173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
13769	chr7	+	2777	14	NIC	ENSMUSG00000030523.19	novel	529	5	NA	NA	784	-2	intron_retention	FALSE	canonical	3	45	junction_13	363.532032235866	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCAAAATCTTAGATGAAT	NA	False	NA	NA	False	NA	NA	NA	63836132	63874510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
13770	chr13	-	3856	6	NNC	ENSMUSG00000113019.2	novel	395	4	NA	NA	-337	3311	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	33.1300467853578	166	33	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATTTCTGACTCTCCAG	NA	False	NA	NA	False	NA	NA	NA	74670917	74654405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74657816_74659212_74659274_74659474_74659602_74660551_74660676_74670472_74670559_74670869
13772	chr15	+	2146	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	224.467626965573	8	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-33	True	NA	NA	NA	101982359	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687_102003836_102005391
13774	chr8	-	1956	5	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-54	-5	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	2131.08874756543	108	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAGAAATGAGTTCAATT	NA	False	NA	NA	False	NA	NA	NA	43760071	43748108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460_43758596_43759877
13775	chrX	+	3390	15	NNC	ENSMUSG00000031337.17	novel	3469	3	NA	NA	4156	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	90.9078082005981	355	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGTATTTCCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	70262846	70358894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70262942_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
13776	chr9	+	3600	23	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_22	56.9185477184737	167	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	6630	False	NA	NA	False	NA	NA	NA	21232043	21266324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264469_21264977
13777	chr13	+	3154	10	NNC	ENSMUSG00000093930.3	novel	3245	10	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	206.773329703188	3	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120151991	120169618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165169_120165983_120166068_120166592_120166719_120166883_120167048_120167924
13778	chr6	-	1898	10	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	1119	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1285.4168176361	9	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	NA	False	NA	NA	NA	144985362	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945284_144945579_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160
13779	chr11	-	1934	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-1018	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1274.13335644272	1	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	NA	False	NA	NA	False	NA	NA	NA	106677894	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676266_106677051_106677186_106677273_106677371_106677734
13780	chr11	-	2095	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1694.89298777238	49	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676350_106677070_106677157_106677745_106677901_106679098
13781	chr11	+	4014	22	NNC	ENSMUSG00000020898.19	novel	4164	23	NA	NA	-9	0	intron_retention	FALSE	canonical	0	0	junction_5	128.827153093397	41	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTCATCTCTGAGGT	5300	False	NA	NA	False	NA	NA	NA	68906950	68927299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68906992_68911855_68912020_68913218_68913441_68913534_68913747_68914987_68915127_68916895_68917179_68917276_68917406_68918079_68918313_68918429_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
13782	chr4	+	2832	1	Intergenic	novelGene_2028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGGTATTCTGATCTTT	NA	False	NA	NA	False	NA	NA	NA	146136041	146138873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146136000_146138900
13783	chr7	+	2656	7	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	315.509508573038	191	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
13784	chr16	-	5358	21	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	0	-21	intron_retention	FALSE	canonical	3	32	junction_4	32.0850042854914	12	95	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAGAGATGACTTTCAT	NA	False	NA	NA	False	NA	NA	NA	10994205	10954476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963105_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
13785	chr8	-	3906	12	Antisense	novelGene_ENSMUSG00000001909.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	83	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGCAAAGAGGGCGGGCC	6439	False	NA	NA	False	NA	NA	NA	85426412	85415923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_85416004_85416334_85416533_85417141_85417575_85417878_85418067_85421844_85421965_85422054_85423966_85424051_85424184_85424267_85424359_85424809_85424922_85425020_85425095_85425763_85425886_85425967
13786	chr15	-	2590	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	73	636	-10	-634	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	16	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGTGCTGTAAAGGGACAAA	NA	False	NA	NA	False	NA	NA	NA	83033512	83010812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
13787	chr17	-	3329	12	NNC	ENSMUSG00000025728.17	novel	3233	12	NA	NA	22	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	106.891464224076	4	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGAGTACCAGCTTGGG	NA	False	NA	NA	False	NA	NA	NA	26160835	26145407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26157657_26158014_26160788
13789	chr9	-	2141	1	Genic_Genomic	ENSMUSG00000110834.2	novel	NA	NA	NA	NA	11451	1810	mono-exon	FALSE	NA	NA	NA	NA	NA	4	63	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGTAANNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	124033318	124031177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_124031200_124033300
13790	chr11	-	3148	13	NNC	ENSMUSG00000001323.18	novel	3699	9	NA	NA	16316	7171	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAACCTAGCAACACAAAG	NA	False	NA	NA	False	NA	NA	NA	74800168	74790013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_74790226_74790332_74790470_74790978_74791402_74792312_74792474_74792833_74792991_74794643_74794830_74795643_74795813_74796024_74796141_74796714_74796848_74798158_74798277_74798648_74798789_74798869_74798955_74799057
13791	chr6	-	3462	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	24	235	-23	-235	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	6007	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAATATAGCTAATGCAT	NA	False	NA	NA	False	NA	NA	NA	71800770	71790215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
13792	chr15	-	2192	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	447.383321922816	804	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTTCGTCCTGTGCT	2773	False	NA	NA	False	NA	NA	NA	77854985	77843203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844614_77845803_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
13793	chr12	+	3913	6	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	265.563551715969	15	167	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516880	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552702_86553122_86553285_86561054_86561325_86565594
13794	chr3	+	3282	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-9	-18	intron_retention	FALSE	canonical	0	0	junction_7	279.992201057567	2	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGAAGTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	102965654	102975204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102972980_102974087
13795	chr4	+	3229	16	NNC	ENSMUSG00000028737.16	novel	3382	15	NA	NA	-15	0	intron_retention	FALSE	non_canonical	0	0	junction_15	59.242102145912	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATATTTTGATCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	139350161	139376998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468_139376569_139376733
13796	chr8	+	2519	2	FSM	ENSMUSG00000052446.18	ENSMUST00000144807.2	701	2	-3	-1815	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	40	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72704920	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72705005_72721742
13798	chr9	+	5190	9	NIC	ENSMUSG00000001774.9	novel	5789	11	NA	NA	-17	1983	intron_retention	FALSE	canonical	3	795	junction_1	63.7411758598788	30	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTGTTTCTGTCATG	8523	False	NA	NA	False	NA	NA	NA	18203578	18225292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
13799	chr6	+	4065	12	FSM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	-30	6	-30	1	multi-exon	FALSE	canonical	3	149	junction_3	28.0630930241598	224	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTCTGTCTCGTGCAT	1227	False	NA	NA	False	NA	NA	NA	34686346	34752402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
13800	chr13	+	2089	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	119	2095	34	-44	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATGATTTCTGTACTGCA	NA	False	NA	NA	False	NA	NA	NA	3588181	3615776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
13801	chr14	+	3152	8	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	16	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	19.7556501863572	227	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGAGCAGTGTACGTG	NA	False	NA	NA	False	NA	NA	NA	70004949	70021854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015161_70015265_70017952_70018023_70019680
13802	chr12	+	1813	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	906	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
13803	chr15	+	5710	21	FSM	ENSMUSG00000064210.8	ENSMUST00000227791.2	3149	21	-52	-2509	-3	717	multi-exon	FALSE	canonical	3	29	junction_1	22.898635330517	112	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGCTGTGGCCTAACGA	NA	False	NA	NA	False	NA	NA	NA	95688720	95873349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_95688938_95728524_95728588_95762105_95762189_95792293_95792423_95810185_95810252_95811252_95811538_95811752_95811867_95813833_95813950_95818124_95818260_95825404_95825511_95829663_95829725_95839090_95839234_95841278_95841357_95846152_95846379_95847371_95847542_95847739_95847838_95853771_95853903_95859956_95860163_95863701_95863905_95865503_95865610_95870375
13804	chr7	+	4983	15	NIC	ENSMUSG00000033904.17	novel	5073	16	NA	NA	-1	-2	combination_of_known_junctions	TRUE	canonical	3	41	junction_14	17.3487634094403	194	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATCTTGTTGGATCTCT	NA	False	NA	NA	False	NA	NA	NA	118311773	118336242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118334490
13806	chr16	-	2071	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	10	1322	10	577	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAAAGAAGTGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	22084745	22064620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
13807	chr1	-	2772	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	831.713045373072	1	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287363	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273708_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
13809	chr6	+	3209	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	13	7	0	-4	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	1430	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGGCTTATGTGTCTTT	-1	True	NA	NA	False	NA	NA	NA	29348117	29376667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
13810	chr4	-	2720	23	NNC	ENSMUSG00000028559.18	novel	2408	23	NA	NA	-5	-7	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_9	118.252959357025	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTTTAAAAATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	109059438	108918858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925658_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
13811	chr6	+	2163	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	105	269	-22	-269	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	351	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTTCATTAGCTTGA	-3	True	NA	NA	False	NA	NA	NA	17637086	17666702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
13814	chr6	+	4576	1	Antisense	novelGene_ENSMUSG00000029687.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTCTACAATTTTCAGC	4889	False	NA	NA	False	NA	NA	NA	47515063	47519639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_47515100_47519600
13816	chr11	+	2914	19	NNC	ENSMUSG00000020363.7	novel	2947	19	NA	NA	-31	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	111.728244492089	517	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCGACTTGTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	49684973	49729439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49718029_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
13817	chr17	-	2178	15	Antisense	novelGene_ENSMUSG00000007564.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGTCCTCATTGCGGAGT	NA	False	NA	NA	False	NA	NA	NA	21186074	21165843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21165991_21171600_21171694_21174874_21174975_21176047_21176287_21176970_21177113_21177216_21177373_21178979_21179095_21179199_21179270_21179647_21179784_21180725_21180902_21181214_21181275_21181845_21182002_21182835_21182976_21185497_21185590_21185718
13819	chr1	+	3308	22	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	36	-254	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	612.79862450483	1	123	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAGATTTTCTTTTTTA	3183	False	NA	NA	False	NA	NA	NA	180396529	180428563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396608_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425933_180426517_180426646_180427157_180427220_180427660_180427776_180428014
13820	chr13	-	2232	12	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	523.484731833518	24	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGTTGCTTTTGGTCAA	NA	False	NA	NA	False	NA	NA	NA	74498358	74470380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479481_74485529_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
13821	chr9	+	2710	24	Intergenic	novelGene_1162	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCTACCCACAGTCCCT	3240	False	NA	NA	False	NA	NA	NA	107617905	107648182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_107618291_107619589_107619714_107619791_107619898_107621035_107621111_107621381_107621562_107622133_107622205_107622284_107622439_107623219_107623380_107626906_107626999_107627206_107627292_107627661_107627741_107629087_107629153_107629309_107629398_107630175_107630273_107631219_107631339_107631632_107631688_107633051_107633113_107634107_107634194_107636974_107637045_107637518_107637593_107642695_107642850_107644741_107644908_107646758_107646832_107648091
13823	chr8	-	2257	8	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	5	-178	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	457.857343436551	2	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTACCGGTGTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	80426037	80410268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415946_80425975
13824	chr8	+	2498	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	-2	151	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	221.135337226419	157	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACTTATTTTTAG	NA	False	NA	NA	False	NA	NA	NA	69246605	69280304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69261570_69261651_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
13825	chr13	-	2909	13	NNC	ENSMUSG00000032745.19	novel	3694	13	NA	NA	173	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	328.27591503016	459	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAAGCTTCTGTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	111626389	111562697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574614_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
13826	chr14	+	2009	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	574.72205785665	149	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAATCCTCAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292032_30292184_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
13827	chr11	-	3417	20	Intergenic	novelGene_2279	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCATGCGCATGCGCACGAC	NA	False	NA	NA	False	NA	NA	NA	54555177	54413673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_54413943_54434402_54434471_54437193_54437254_54443613_54443698_54452148_54452220_54459177_54459322_54501612_54501753_54510716_54510888_54513139_54513277_54516684_54516844_54517408_54517562_54522015_54522181_54525583_54525694_54526837_54527040_54530573_54530683_54533534_54533776_54540005_54540164_54548069_54548311_54551626_54552011_54554826
13828	chr6	+	2135	9	NNC	ENSMUSG00000015733.14	novel	2537	10	NA	NA	0	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	806.117547259703	5	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCTAATTTCCTCTT	22	True	NA	NA	False	NA	NA	NA	17637111	17666824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657173_17657203_17662091_17662169_17665049_17665113_17665293
13829	chr2	-	3188	17	NNC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	151.157202937869	55	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	488	False	NA	NA	False	NA	NA	NA	119617994	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600119_119604614_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617786_119617915
13830	chr16	-	3147	21	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	619.54856750702	1	98	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTATCTAGCATTTATT	1538	False	NA	NA	False	NA	NA	NA	91440003	91418285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419789_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438248_91438491_91438578_91439857
13831	chr7	+	3230	25	NNC	ENSMUSG00000109168.2	novel	448	2	NA	NA	1	11761	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	107	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATCTACATCTGAATGGG	NA	False	NA	NA	False	NA	NA	NA	28014323	28030059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28014694_28014771_28014868_28015146_28015348_28015431_28015605_28015709_28015870_28016211_28016314_28016409_28016541_28016640_28016746_28016819_28016928_28017163_28017247_28018163_28018289_28018378_28018525_28019389_28019541_28019646_28019798_28021423_28021568_28021645_28021739_28021888_28021993_28023148_28023216_28023312_28023404_28025370_28025627_28028127_28028215_28028675_28028749_28028839_28028906_28028999_28029079_28029991
13832	chr6	-	2296	11	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-20	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	584.627069164609	169	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAATCATGTTGTTTGCCT	8936	False	NA	NA	False	NA	NA	NA	47790318	47773082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780405_47780453_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
13834	chr7	+	3094	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	105.395055712282	582	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	980	False	NA	NA	False	NA	NA	NA	97130209	97190605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157034_97158836_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
13836	chr11	-	3393	7	Antisense	novelGene_ENSMUSG00000002129.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGGTAATCCAGGGAG	2847	False	NA	NA	False	NA	NA	NA	4132508	4124029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_4124161_4126478_4126722_4127406_4127618_4128067_4128228_4129141_4129241_4129351_4129426_4130033
13837	chr17	+	2240	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	153	17	-23	-6	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	6	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATACTTGGTTCTCTAGT	NA	False	NA	NA	False	NA	NA	NA	21165725	21186161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
13838	chr5	-	2671	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	31	0	31	0	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	117	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	34817461	34795879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
13842	chr16	-	2297	5	NNC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	854.7122322747	6211	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	17019356	16969878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16971180_16971491_16972147_16977853_16978041_16994275_16994372_17019298
13843	chr11	-	1936	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	152	-204	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1169.3288287399	2	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACTGCAGTGCAGCAG	9833	False	NA	NA	False	NA	NA	NA	106679141	106672577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677282_106677371_106677734_106677901_106679098
13844	chr17	-	2323	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	3	0	intron_retention	FALSE	canonical	1	5	junction_12	710.667233773841	88	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906493	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903416_45904257_45904359_45906407
13845	chr2	-	4457	14	NIC	ENSMUSG00000075415.14	novel	4726	17	NA	NA	-4	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	43.0912064231894	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCTGGTTCTCTGTTGTA	4815	False	NA	NA	False	NA	NA	NA	31031973	30916220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30918896_30923041_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30995253_30995370_31031790
13846	chr12	+	1930	9	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	-16	-57	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	2116.74770801222	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758734	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763626_24763754
13847	chr1	-	2924	18	FSM	ENSMUSG00000003458.13	ENSMUST00000140643.8	3016	18	86	6	86	-6	multi-exon	FALSE	canonical	3	15	junction_16	166.01196438311	521	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTTGTTGTTTGGTA	9082	False	NA	NA	False	NA	NA	NA	171910276	171893585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171903192_171903308_171908778_171908884_171910167
13849	chr1	-	2181	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2574.59276580243	3	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTGCCAGACTTAATAC	NA	False	NA	NA	False	NA	NA	NA	86287086	86278221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279189_86280279_86280356_86280847_86281003_86281460_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
13850	chr2	+	2416	10	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	-3	-70	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	841.246356365818	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTAATTTTTGTGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	34662103	34666473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664293_34664340_34664431_34664546_34664785_34665077_34665246_34665562
13851	chr9	+	3450	9	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	2	2	intron_retention	FALSE	canonical	3	223	junction_8	148.94944612183	69	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCTTTTATAGTTTG	9074	False	NA	NA	False	NA	NA	NA	15217511	15228268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15226428_15226678_15226737_15228184
13852	chr1	+	4328	30	NIC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	2	91	junction_2	22.942776355976	147	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTACCAGTGTCGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	10110001	10206991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
13853	chr3	-	3659	7	ISM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	-24	5	4	-3	intron_retention	FALSE	canonical	3	426	junction_3	224.218953009974	1	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGGCTGTTGTGTATA	6158	False	NA	NA	False	NA	NA	NA	153618588	153612932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897
13854	chr17	-	2751	19	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	-36	-2	intron_retention	FALSE	canonical	3	46	junction_16	111.349244815525	9	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGAGACAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	24738218	24727825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735574_24737715_24737774_24738104
13856	chr2	-	4194	13	NNC	ENSMUSG00000027104.19	novel	4037	13	NA	NA	329	-4	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_12	100.726113793792	1	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAATTATGTTTATAAT	NA	False	NA	NA	False	NA	NA	NA	73722545	73646871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722307
13857	chr11	-	1864	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1334.5135424797	67	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676259_106677799_106677901_106679098
13858	chr17	+	4892	24	NIC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	3	0	intron_retention	FALSE	canonical	3	111	junction_7	12.1627277808041	10	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCCAGTATTTTTATT	NA	False	NA	NA	False	NA	NA	NA	25352367	25381072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
13859	chr4	-	2804	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	-190	10	-190	-10	multi-exon	FALSE	canonical	3	625	junction_9	43.7020339182862	1291	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAATAACTATCAGCTT	NA	False	NA	NA	False	NA	NA	NA	48279748	48193332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
13860	chr13	-	1893	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3503.85042503535	2	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTGGTGGTCTTTTTT	5128	False	NA	NA	False	NA	NA	NA	58549953	58539765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541106_58541523_58541589_58541873_58541974_58542123_58542179_58542291_58542602_58542978_58543108_58543387_58543502_58544001_58544065_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548143_58548232_58549877
13861	chrX	+	3797	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-30	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	312.456235988793	1	133	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTGCCAATAAAATTTAGGA	NA	False	NA	NA	False	NA	NA	NA	95139617	95212131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95211529_95211576
13862	chr8	-	3043	24	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-3	4	combination_of_known_junctions	FALSE	canonical	3	40	junction_8	97.7241014284603	371	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	73175307	73094838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132927_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
13863	chr7	-	4583	4	Antisense	novelGene_ENSMUSG00000099689.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	2.35702260395516	26	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGCAAAAGAAGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	29616209	29607954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_29608074_29609604_29609671_29611591_29612188_29612407
13865	chr17	-	2318	15	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_14	844.647049219437	365	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906438	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45905214_45905499_45906407
13866	chr11	+	2539	22	ISM	ENSMUSG00000059439.16	ENSMUST00000092821.10	2769	24	-84	241353	-39	-19047	5prime_fragment	FALSE	canonical	3	82	junction_16	16.0315731563836	226	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	3439	False	NA	NA	False	NA	NA	NA	85243953	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
13867	chr11	-	2983	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	80	6	30	-6	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTCTTTGTTTGGAT	NA	False	NA	NA	False	NA	NA	NA	54678421	54608287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
13868	chr12	+	3309	9	FSM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	1	0	1	0	multi-exon	FALSE	canonical	3	165	junction_6	24.0724816959116	380	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	2664	False	NA	NA	False	NA	NA	NA	80509869	80544896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
13869	chr15	-	2877	10	NNC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	-5	842	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	108.056683798737	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTAGTGATGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	44291274	44238624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264784_44268803_44268926_44269205_44269389_44284114_44284270_44291057
13870	chr15	+	4517	8	NIC	ENSMUSG00000050697.10	novel	4655	9	NA	NA	12	-25	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	45.007482371132	332	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGAAAAAAGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	5173354	5211348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_5173478_5190083_5190226_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
13871	chr1	-	2315	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	2057.09140614958	1	66	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287096	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285913_86286978
13872	chr8	+	3329	13	NNC	ENSMUSG00000001482.16	novel	589	4	NA	NA	-94	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	103.539444979518	42	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	124173826	124190009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124173893_124174055_124174258_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
13873	chr11	-	2299	16	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	323.01475714483	2073	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCAGGTGTGTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	35725329	35699208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723081_35723277_35723998_35724134_35725263
13874	chr3	-	1884	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30627	-2421	multi-exon	FALSE	non_canonical	0	0	junction_1	0	319	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCCCGAACGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	121251850	121220305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_121220476_121243595_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
13875	chr11	+	1682	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-16	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4054.90411230648	2	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACAGTATTGTTTGTCT	3067	False	NA	NA	False	NA	NA	NA	75623770	75656459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642836_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
13876	chr7	+	4705	7	FSM	ENSMUSG00000030386.20	ENSMUST00000098822.10	4748	7	41	2	-29	-2	multi-exon	FALSE	canonical	3	94	junction_4	11.513277359447	188	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTGATGACCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	12212260	12230160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12223496_12223624_12223875_12223972_12226283
13877	chr9	-	2252	6	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-76	intron_retention	FALSE	canonical	0	0	junction_3	1856.82875893282	9	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACGTATTGTCAAGTCAG	NA	False	NA	NA	False	NA	NA	NA	110775162	110768746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771507_110771597_110771992_110772038_110772322_110773258_110773312_110774891
13878	chr1	+	2376	10	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	255.298711510194	4	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4878106	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4916345_4916410
13879	chr2	-	3714	3	FSM	ENSMUSG00000089824.11	ENSMUST00000059647.12	6667	3	29	2924	-11	2603	multi-exon	FALSE	canonical	3	245	junction_2	24	249	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTATGTACCTTTAT	NA	False	NA	NA	False	NA	NA	NA	155953847	155936801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155940293_155945268_155945350_155953705
13880	chr1	-	1515	10	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	2258	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	3223.01176533784	1	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAAACTCTGTTGCCAGA	NA	False	NA	-90	True	NA	NA	NA	86284433	86278229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282891_86283672_86283921_86284380
13882	chr15	-	3043	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	1	0	1	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	2	116	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	38300949	38294656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
13883	chr7	-	3357	19	NIC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	8168	-2	intron_retention	FALSE	canonical	3	1332	junction_2	79.5593768480149	1	93	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143142321	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143125220_143125334_143128249_143128372_143129654_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228
13884	chr4	-	1762	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	3	0	3	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	4	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
13885	chr8	+	3728	22	NNC	ENSMUSG00000018796.14	novel	3429	21	NA	NA	2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	120.72949091802	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGGAGAATGTCTTTC	9517	False	NA	NA	False	NA	NA	NA	46944012	46989079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46944088_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376_46988383_46988423
13886	chr1	+	3857	16	FSM	ENSMUSG00000070732.3	ENSMUST00000094698.2	3851	16	-3	-3	-1	3	multi-exon	FALSE	canonical	3	84	junction_2	27.1317771871533	215	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGTGCTTTCTGTAGT	4261	False	NA	NA	False	NA	NA	NA	91072821	91098520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_91072892_91077804_91077896_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
13887	chr16	-	2276	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	6	-64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1306.06652798018	3	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGCTGTAAATTATTTT	NA	False	NA	NA	False	NA	NA	NA	87292755	87280277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285742_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
13888	chr18	+	2632	20	FSM	ENSMUSG00000024231.16	ENSMUST00000025073.12	3727	20	110	985	110	4	multi-exon	FALSE	canonical	3	16	junction_19	256.100893379987	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATAAGC	75	False	NA	NA	False	NA	NA	NA	3383097	3435389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3434843
13890	chr12	+	2376	2	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517225_86566355
13891	chr2	+	1986	14	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	32	-707	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1471.14714729495	7831	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	121244395	121268461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121245031_121245095_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
13892	chr2	+	2696	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-36	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	520.088574187128	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAATTTAATAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	84867541	84877419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873140_84873299_84873346_84874671_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
13894	chr11	-	3773	17	NNC	ENSMUSG00000020361.14	novel	4618	19	NA	NA	8135	1302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	644.661560311882	21	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCTTTAAGTTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	53183103	53152404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_53152643_53153090_53153253_53153706_53154557_53156021_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174351_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083
13896	chr7	-	4971	10	NIC	ENSMUSG00000030491.17	novel	1620	12	NA	NA	7	11	intron_retention	FALSE	canonical	3	378	junction_4	47.0793918376445	9	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCAGAATTCTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	35237111	35193054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_35193363_35193695_35193757_35200814_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
13897	chr2	-	4922	22	NIC	ENSMUSG00000036281.14	novel	4368	23	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	31	junction_2	12.8689540104961	14	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTAAAAAGCAATGTATAG	NA	False	NA	NA	False	NA	NA	NA	26270650	26252789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26253033_26253649_26253805_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
13898	chr16	+	3461	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	31	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	252.926604539638	1	111	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598607	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631666_13631757
13899	chrX	+	3537	18	NNC	ENSMUSG00000025265.15	novel	594	3	NA	NA	3059	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	101.75447075357	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCAGAGCACTGCTATGG	NA	False	NA	NA	False	NA	NA	NA	149833224	149872517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_149833573_149849176_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
13900	chr18	-	2215	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	55	149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1566.45507436377	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTCTGTCACTAGCCT	254	False	NA	NA	False	NA	NA	NA	35087355	35071170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079623_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
13901	chr3	-	5750	26	NIC	ENSMUSG00000060671.13	novel	5559	27	NA	NA	29	-15	intron_retention	FALSE	canonical	3	88	junction_25	27.2835774780361	137	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCCAATTTCTGAGAGG	3841	False	NA	NA	False	NA	NA	NA	89867907	89846810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604_89864676_89865115_89865189_89865284_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89867591
13903	chr17	-	2409	16	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	644.248999481826	10	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGTGGCTTGCCTTTTT	5756	False	NA	NA	False	NA	NA	NA	33904377	33865214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865434_33865493_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
13904	chr15	-	2571	15	NIC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	28	36	intron_retention	FALSE	canonical	3	559	junction_10	44.3286082592729	1649	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTGTCACTTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	76361449	76337152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
13905	chrX	+	2636	20	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	1001.70508927158	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542350_20544813_20545024_20545629_20545705_20545831_20546028_20548869
13906	chr12	-	2382	22	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-10	-2334	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	620.508276771511	1	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299174	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290739_13293869_13293930_13295944_13296079_13299104
13908	chr12	+	3114	7	ISM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	1948	424	-995	-424	3prime_fragment	FALSE	canonical	3	450	junction_6	47.2569806718777	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTTCAGTGATGTTGAAG	NA	False	NA	NA	False	NA	NA	NA	70501816	70514390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
13909	chr10	+	2685	9	NNC	ENSMUSG00000020088.11	novel	2613	7	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	657.557590158459	24	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516121	61529076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61516193_61517877_61517928_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525390_61525511_61525617_61525685_61527063
13910	chr7	-	2009	19	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	17	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	617.800758965039	2	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGGAGGCATGGGGGCT	NA	False	NA	NA	False	NA	NA	NA	33929650	33901593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33928964_33929040_33929516
13911	chr15	-	5508	2	NIC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	86	202	intron_retention	FALSE	canonical	3	7	junction_1	0	77	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGAAGTAAGCTCAC	336	False	NA	NA	False	NA	NA	NA	83251392	83237845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_83243152_83251190
13912	chr12	-	3073	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-20	1	intron_retention	FALSE	canonical	3	128	junction_16	39.3068358399655	3	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATAGACTGATTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	84664164	84649305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
13913	chr1	+	2803	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	269	804	35	-804	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGGTTTTATAGATCAGT	926	False	NA	NA	False	NA	NA	NA	58432325	58445708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
13914	chr6	+	2534	13	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	495.562383952706	1	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTCTATCCCTTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	71808333	71852242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
13915	chrX	+	3110	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	69	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	311.34454788867	1	92	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799492	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809442_150809527_150809767_150810694_150810949_150811036_150811178_150811960_150812007_150817024_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
13916	chr1	-	2896	9	ISM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	-10	0	-10	0	intron_retention	FALSE	canonical	3	1233	junction_8	52.5522061858491	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	74323849	74319004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252
13917	chr7	-	1754	1	NIC	ENSMUSG00000003873.12	novel	801	6	NA	NA	2587	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	27	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTGTATGGTCCCTTGT	7279	False	NA	NA	False	NA	NA	NA	45112881	45111127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45111100_45112900
13919	chr4	-	4692	27	NNC	ENSMUSG00000028433.15	novel	4368	29	NA	NA	17	0	intron_retention	FALSE	non_canonical	0	0	junction_7	301.729033676432	1	168	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGGTCTCCGTGTTCT	5	True	NA	NA	False	NA	NA	NA	41275099	41194315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221619_41223355_41223460_41226279_41226335_41227202_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
13920	chr15	-	1881	10	NIC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-24	-19	intron_retention	FALSE	canonical	3	5733	junction_6	257.414399052396	219	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAACTGCTTCCACTTAT	NA	False	NA	NA	False	NA	NA	NA	31601910	31590964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
13921	chr9	-	2921	14	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	413.691077607806	3	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCACCTTGTGTTCCTG	8715	False	NA	NA	False	NA	NA	NA	31123111	31060856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080041_31088396_31088438_31089200_31089375_31122918
13922	chr10	+	4052	24	NIC	ENSMUSG00000005682.10	novel	4445	26	NA	NA	773	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_21	65.493993144381	1	67	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	NA	False	NA	NA	NA	128140039	128157222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154813_128154908_128156116_128156315_128156602
13923	chr11	-	4183	21	FSM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	7	3	-1	-3	multi-exon	FALSE	canonical	3	124	junction_20	14.6399282785128	188	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTTGGCAAGTTGTGT	2625	False	NA	NA	False	NA	NA	NA	101117269	101081944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
13924	chr6	+	2208	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	-22	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	465.928478351319	32	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTGGCTTTGTCGTTTG	2921	False	NA	NA	False	NA	NA	NA	122285935	122294635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286_122293406_122293451
13926	chrX	+	3468	6	NNC	ENSMUSG00000096508.8	novel	3677	5	NA	NA	21	18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	80.3133861818813	5	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCATGAGATTCATTTAAT	NA	False	NA	NA	False	NA	NA	NA	134334604	134344597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134334711_134334908_134335036_134339279_134339336_134339541_134339580_134340880_134341466_134342041
13927	SIRV3	+	1829	3	NNC	SIRV3A	novel	2018	3	NA	NA	595	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1410.5	4	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	4598	7822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_4780_6057_6604_6720
13928	chr15	+	1361	11	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	5256	0	-286	5prime_fragment	FALSE	canonical	3	1727	junction_10	116.36670486011	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAATGCCTGTGGCCCTTG	NA	False	NA	NA	False	NA	NA	NA	81756684	81794078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042
13929	chr11	-	1865	9	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-4498	-253	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	583.050812536952	5	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTATTATTTTTTTAAT	2204	False	NA	NA	False	NA	NA	NA	106586671	106545296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545984_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579
13930	chr18	-	4419	7	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	5	-2	intron_retention	FALSE	canonical	3	82	junction_4	49.6848400755536	4	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATATGTTGTTACGTCT	NA	False	NA	NA	False	NA	NA	NA	70605546	70585285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70602849_70604743_70605051_70605361
13931	chr2	-	3396	25	FSM	ENSMUSG00000027379.15	ENSMUST00020183811.1	3418	25	22	0	22	0	multi-exon	FALSE	canonical	0	0	junction_18	145.15221297161	40	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGTTGTTCTAAATACTC	NA	False	NA	NA	False	NA	NA	NA	127673757	127643035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
13932	chr18	+	2556	14	NNC	ENSMUSG00000037236.17	novel	3107	15	NA	NA	-346	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	495.523869581924	2	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	7391	False	NA	NA	False	NA	NA	NA	35710607	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35710703_35711468_35711511_35711957_35712071_35712318_35712376_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432_35724066_35724161
13933	chr9	-	4095	14	NIC	ENSMUSG00000025646.10	novel	4215	14	NA	NA	23	-1	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	34.9887555902104	194	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTTGCCGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	108903165	108887004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108887997_108888256_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
13934	chr16	+	4660	13	Antisense	novelGene_ENSMUSG00000039738.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCGGGGCTGCGCTTGCG	NA	False	NA	NA	False	NA	NA	NA	3798828	3821631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_3798861_3799450_3799552_3802854_3805039_3805776_3805938_3806828_3806982_3808094_3808180_3808565_3808777_3809328_3809653_3809779_3809986_3812571_3812785_3816981_3817210_3818816_3819545_3821597
13935	chr8	+	3906	14	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	45039	0	intron_retention	FALSE	non_canonical	0	0	junction_1	371.914509486876	1	156	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	1477	False	NA	NA	False	NA	NA	NA	107375813	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107375861_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384544_107384852_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
13936	chr1	-	2907	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1115.30189123562	1	84	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287403	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273604_128273742_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
13937	chr9	+	3447	16	NNC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	4	-18	intron_retention	FALSE	canonical	2	29	junction_9	91.3560555677011	119	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTAAAGAGTTTCCAAACG	NA	False	NA	NA	False	NA	NA	NA	99125498	99182439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160215_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99180636_99181780
13938	chr1	-	3537	23	NIC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	-8	-292	intron_retention	FALSE	canonical	3	518	junction_14	34.1253159704441	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAACGACAACGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	135358179	135313150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
13939	chr11	-	2460	22	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	0	-1964	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1032.7932821813	1	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAGGTAAGGAAGGGAGG	NA	False	NA	NA	False	NA	NA	NA	100418695	100370015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100370023_100375463_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
13940	chr2	-	6963	5	FSM	ENSMUSG00000035666.15	ENSMUST00000037117.6	6941	5	-24	2	-24	-2	multi-exon	FALSE	canonical	3	186	junction_4	18.8215302247187	69	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAAAGGGGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	28730322	28712318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28729894
13941	chr16	-	2012	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	61	20	61	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACTGCCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975379	45973367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
13942	chr13	+	1814	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	287	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588133	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615268_3615635
13943	chr13	+	3621	28	NNC	ENSMUSG00000021686.7	novel	4021	27	NA	NA	88	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	85.0625203783303	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATATGAATAGCATTTGC	NA	False	NA	NA	False	NA	NA	NA	94495555	94702809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112_94702347_94702642
13944	chr19	+	4067	19	NNC	ENSMUSG00000046139.9	novel	4216	19	NA	NA	796	-121	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	67.446480840573	2	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCTTTATACCTTTCT	NA	False	NA	NA	False	NA	NA	NA	11890602	11922334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_11890754_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
13945	chr8	-	3797	18	Antisense	novelGene_ENSMUSG00000000303.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	143	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCAGTAGTGCGCCGCG	6327	False	NA	NA	False	NA	NA	NA	107396878	107330033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107330177_107330923_107331038_107375630_107375857_107380138_107380277_107380389_107380552_107383455_107383599_107384369_107384546_107384820_107384951_107386220_107386397_107387424_107387664_107388518_107388662_107390377_107390602_107390825_107391056_107392025_107392144_107392812_107392963_107395037_107395357_107395853_107396128_107396186
13946	chr12	-	5936	35	ISM	ENSMUSG00000021279.6	ENSMUST00000041965.5	6714	37	35671	2	-27510	-2	3prime_fragment	TRUE	canonical	3	105	junction_28	15.1577632079119	192	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCAGGGGTTTGTCTGAT	NA	False	NA	NA	False	NA	NA	NA	111308481	111259411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111260667_111261327_111261399_111261489_111261596_111262172_111262291_111262381_111262500_111262642_111262728_111262813_111262912_111265516_111266117_111268243_111268307_111268447_111268665_111270263_111270346_111271405_111271546_111272099_111272237_111272875_111272982_111274212_111274291_111274541_111274632_111277920_111278001_111279760_111279856_111280857_111281007_111283892_111283999_111284341_111284467_111284869_111284976_111285062_111285308_111286411_111286523_111287397_111287641_111287904_111288039_111289236_111289357_111289440_111289608_111291417_111291498_111292393_111292643_111293849_111294051_111295572_111295667_111302459_111302609_111306254_111306351_111308459
13947	chr10	+	2614	12	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	-8	-152	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	443.8353689272	1	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTGTGTTTGTATGG	NA	False	NA	NA	False	NA	NA	NA	128173670	128198196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836_128197173_128197264
13949	chr9	-	3458	7	NNC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	5	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	89.6858715492889	26	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTATGGGATCCTTTC	NA	False	NA	NA	False	NA	NA	NA	57744071	57697636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57699902_57703931_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
13950	chr4	-	3027	20	NNC	ENSMUSG00000028678.14	novel	2842	20	NA	NA	-17	5	intron_retention	FALSE	canonical	1	1	junction_18	145.826577076051	60	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTCTGTGTGATTATC	NA	False	NA	NA	False	NA	NA	NA	117039756	117016830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117035597_117035782_117037768_117037864_117039627
13951	chr1	+	2681	7	NIC	ENSMUSG00000025979.14	novel	2840	8	NA	NA	7	-52	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	185.331609704215	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCCACCCTCCCTGTAGT	NA	False	NA	NA	False	NA	NA	NA	55170452	55194005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_55170519_55175835_55175899_55184282_55184384_55187706_55187794_55189304_55189385_55190129_55190242_55191833
13952	chr15	-	1130	1	Intergenic	novelGene_3325	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGACAAAGCCTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	79814709	79813579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_79813600_79814700
13953	chr15	-	1822	2	ISM	ENSMUSG00000053411.17	ENSMUST00000109615.8	710	6	9027	1549	9003	-738	internal_fragment	FALSE	canonical	3	490	junction_1	0	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACGGCTTGTCTGCAGT	NA	False	NA	NA	False	NA	NA	NA	79807714	79803859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79805640_79807672
13954	chr8	+	2948	10	Antisense	novelGene_ENSMUSG00000031575.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	1.57134840263677	2	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAACCAGCCGGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	26306406	26324575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_26307537_26307631_26307690_26308571_26308673_26309653_26309746_26312721_26312912_26313161_26313335_26317201_26317420_26318793_26318886_26322666_26322764_26323778
13955	chr13	+	2103	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-9	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	591.886847294312	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAAACCACTCTTGGTA	NA	False	NA	NA	False	NA	NA	NA	3588118	3615810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604551_3606400_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
13956	chr5	-	3231	19	NIC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	-253	-1	intron_retention	FALSE	canonical	3	340	junction_10	37.372829636806	653	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGGCCTGTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	30360413	30324424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
13957	chr14	-	2790	14	NNC	ENSMUSG00000022031.7	novel	2851	15	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	123.38058692829	3	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGAGTCGTCGTGTGG	3450	False	NA	NA	False	NA	NA	NA	65830518	65767903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818277_65820334_65820410_65823706_65823846_65827954_65828055_65830373
13958	chr4	+	3185	17	Genic_Genomic	ENSMUSG00000028451.13	novel	1018	3	NA	NA	10043	16772	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	111	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAAACGCTTCACGGAGA	NA	False	NA	NA	False	NA	NA	NA	42979988	43000412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_42980637_42980795_42980959_42982535_42982686_42982839_42983146_42983358_42983577_42984303_42984427_42984530_42984692_42985149_42985265_42985929_42986070_42986146_42986279_42988658_42988768_42990753_42990879_42993162_42993278_42993684_42993829_42995895_42996069_42996231_42996344_43000161
13959	chr2	+	3667	11	NIC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	23	-309	intron_retention	FALSE	canonical	3	416	junction_5	44.7755513645561	4	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGTATTTTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	25162512	25175618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25162690_25162926_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
13960	chr5	-	4015	13	ISM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	-4	1463	-4	34	intron_retention	FALSE	canonical	3	331	junction_12	37.2588542795162	2	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAGACTTGGGTAGATA	6393	False	NA	NA	False	NA	NA	NA	123859111	123837827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554
13961	chr4	+	3655	7	NIC	ENSMUSG00000028788.15	novel	658	3	NA	NA	-22	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1284.07095684866	672	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTGAATTTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	129704989	129743770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129705201_129705917_129706098_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
13963	chr10	+	3114	13	NIC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	0	-13	intron_retention	FALSE	canonical	3	980	junction_9	378.035161503971	1	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAGCTCTCATGGGATG	NA	False	NA	NA	False	NA	NA	NA	111309141	111332732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111331237_111331900
13965	chr14	-	3409	11	ISM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	6579	891	-1869	361	intron_retention	FALSE	canonical	3	720	junction_8	91.8246154361672	1	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8456	False	NA	NA	False	NA	NA	NA	20523400	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435
13967	chr9	-	3540	20	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	8580	False	NA	NA	False	NA	NA	NA	21313093	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299093_21299403_21299446_21299818_21300046_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307623_21308762_21308963_21309262_21309431_21310418_21310544_21310709_21310887_21310978_21311135_21311252_21311311_21311749_21312597_21312686
13968	chr10	+	5073	11	NNC	ENSMUSG00000037608.17	novel	5437	13	NA	NA	4	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	410.069945253246	1	229	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCCTAAGTGGTAATAGC	2809	False	NA	NA	False	NA	NA	NA	20188233	20218231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_20188245_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207843_20208008_20209137_20209319_20210244_20210366_20215432_20215668_20215797
13969	chr10	-	3854	7	NNC	ENSMUSG00000039497.9	novel	4389	6	NA	NA	-167	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.5404093837228	253	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGATCTCTCCTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	34083240	34027391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_34028514_34028574_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687_34060157_34083075
13970	chr6	-	5426	13	FSM	ENSMUSG00000029826.15	ENSMUST00000114900.8	4944	13	-523	41	-193	-41	multi-exon	FALSE	canonical	3	16	junction_3	27.2865453210104	12	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCTCAATAAAAAGAAAAAAT	9471	False	NA	NA	False	NA	NA	NA	38331731	38282261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849
13971	chr11	-	4329	6	NNC	ENSMUSG00000020419.12	novel	1343	11	NA	NA	77	3896	intron_retention	FALSE	canonical	3	13	junction_1	73.5129920490249	4	52	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGTAAAAGCTACAGCA	NA	False	NA	NA	False	NA	NA	NA	4391005	4370171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4374041_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
13972	chr18	+	3327	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_11	325.487047640637	49	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTGATTCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	68433455	68457923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454513_68456163
13973	chr14	+	3099	16	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	417.335974432537	4	48	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	NA	False	NA	NA	NA	19801376	19861855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813790_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
13974	chrX	-	2929	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	27	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.794742517923	3	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCATTCTGCTCTGTGCC	NA	False	NA	NA	False	NA	NA	NA	23231265	23085529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086641_23086886_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
13975	chr16	+	6348	19	FSM	ENSMUSG00000022637.12	ENSMUST00000227062.2	3728	19	43	-2663	0	-1	multi-exon	FALSE	canonical	3	23	junction_2	15.6067609597354	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTGTATGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	51851968	52028410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_51852049_51852540_51852623_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52009375_52009517_52014521_52014642_52024795
13977	chr1	+	5350	29	FSM	ENSMUSG00000026319.14	ENSMUST00000039173.13	4328	29	15	-1037	-15	-74	multi-exon	FALSE	canonical	3	86	junction_7	18.9304244376019	131	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGTTTTTGCTGTGTA	NA	False	NA	NA	False	NA	NA	NA	105591622	105682837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_105592359_105605887_105605978_105614673_105614746_105614854_105614911_105615006_105615121_105619630_105619835_105619936_105620029_105620608_105620903_105623152_105623229_105624225_105624322_105631655_105631769_105641573_105641665_105644502_105644575_105646499_105646641_105647176_105647342_105648992_105649141_105653373_105653531_105654067_105654192_105655664_105655714_105658925_105659006_105662242_105662350_105663647_105663748_105668159_105668243_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
13979	chr11	+	3578	15	Fusion	ENSMUSG00000001755.13_ENSMUSG00000017801.16	novel	2386	9	NA	NA	-1	158	intron_retention	FALSE	canonical	2	14	junction_8	67.9949352855769	1	63	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCACTTCAGCTTCGGTGG	3563	False	NA	NA	False	NA	NA	NA	100973442	100982130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073_100977189_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
13980	chr2	+	2179	13	NNC	ENSMUSG00000027405.17	novel	829	7	NA	NA	14	1	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	1053.88214869279	57	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116425	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116440_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
13981	chr6	-	1842	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-165	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2194.46198645591	39	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51447039	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442192_51443169_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
13982	chr1	+	2442	12	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-1	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	539.971685820288	2	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGGCAGTTTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	59724160	59750663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724375_59735145_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653
13983	chr8	+	3394	8	NNC	ENSMUSG00000002342.18	novel	2109	11	NA	NA	-1	-4	intron_retention	FALSE	non_canonical	0	0	junction_4	93.695337805734	39	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAATGCTGCCTTACCAT	7763	False	NA	NA	False	NA	NA	NA	70626951	70635496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70627057_70629494_70629576_70630101_70630259_70631516_70632151_70632511_70633250_70633355_70633974_70634079_70634177_70634532
13984	chr9	-	4444	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	17	15	5	-15	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	415	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACTCTTAACCCATAAT	NA	False	NA	NA	False	NA	NA	NA	100428170	100374360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
13987	chr10	+	3423	2	ISM	ENSMUSG00000006732.15	ENSMUST00000139486.2	1089	5	1946	-1608	1946	1142	intron_retention	FALSE	canonical	3	390	junction_1	0	2	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGGCAAATTGTGCATA	NA	False	NA	NA	False	NA	NA	NA	126879797	126883376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_126880739_126880894
13988	chr8	+	2846	15	ISM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	4	1577	-1	-1106	intron_retention	FALSE	canonical	3	332	junction_8	31.4289772701069	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAACAGCAGATGGCAG	9632	False	NA	NA	False	NA	NA	NA	111573669	111607282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264
13989	chr15	+	2828	12	NNC	ENSMUSG00000022385.12	novel	2641	12	NA	NA	-18	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	186.649935298964	149	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTTACACTTGACATTT	7119	False	NA	NA	False	NA	NA	NA	85743927	85760759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759034_85759420_85759736_85759953_85760349
13990	chr18	-	4281	23	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-54	94	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	109.467843121558	1	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCCATGGACTTGAAA	NA	False	NA	NA	False	NA	NA	NA	62681820	62637131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62648090_62648619_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62674535_62674678_62681723
13993	chr12	+	3012	6	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	264.780210740909	1	81	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGAGTCGTTCATGCGT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561287_86566445
13994	chr10	-	2297	11	ISM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	9154	1356	-2156	-1356	3prime_fragment	FALSE	canonical	3	576	junction_9	55.5756241530403	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAACATGTCTAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	62428906	62417385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788
13995	chr9	-	2904	24	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	39	-1	combination_of_known_junctions	FALSE	canonical	3	28	junction_9	150.355231542417	19	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCCTGTGTCTTTATTG	9795	False	NA	NA	False	NA	NA	NA	107648105	107617695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
13996	chr12	+	2610	10	Intergenic	novelGene_4467	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGCCGGCTGGAATAAC	NA	False	NA	NA	False	NA	NA	NA	108825980	108860070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_108827355_108828730_108828772_108832007_108832225_108833601_108833703_108841038_108841221_108841589_108841712_108846968_108847078_108848620_108848834_108854300_108854477_108859995
13997	chr8	+	2567	12	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	369.144913200966	6	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5041	False	NA	NA	False	NA	NA	NA	107329974	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386382_107388592_107388663_107390378_107390503_107395960
13998	chr13	-	1934	16	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2747.37364202412	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTAGTGAATCTATT	5123	False	NA	NA	False	NA	NA	NA	58549958	58539781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540012_58540055_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
13999	chrX	+	4249	23	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-5613	7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_9	120.689547775061	1	135	16	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTAACAGCTAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	159940132	160041199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159940262_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_160004661_160004746_160006152_160006237_160007456_160007541_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
14000	chr17	+	2575	8	FSM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	-4	10	-4	-2	multi-exon	FALSE	canonical	3	546	junction_5	66.597787546753	574	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTGTATTCTTTCCTT	5565	False	NA	NA	False	NA	NA	NA	34128414	34134554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
14001	chr16	-	3151	5	NIC	ENSMUSG00000004071.14	novel	2554	6	NA	NA	-1	1	intron_retention	FALSE	canonical	3	30	junction_4	205.076814876768	23	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTATTTTAGACCATG	NA	False	NA	NA	False	NA	NA	NA	4608131	4584703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4586514_4586608_4587660_4587906_4588016_4588534_4588600_4608015
14003	chr17	+	2857	17	NIC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	10	-88	intron_retention	FALSE	canonical	3	1341	junction_7	119.716445586018	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACACTTTCTGCAATGTA	NA	False	NA	NA	False	NA	NA	NA	71923219	71964885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71960518_71964335_71964386_71964470
14004	chr17	+	3590	5	NNC	ENSMUSG00000096910.3	novel	5788	4	NA	NA	18	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	38.8031893019118	42	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGTTGTGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	33508535	33526213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738_33522056_33524233
14005	chrX	+	4355	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	-5	0	-5	0	multi-exon	FALSE	canonical	3	199	junction_10	29.4423164849507	302	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGTCTGCTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	52001137	52045820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
14006	chr10	-	2466	16	Antisense	novelGene_ENSMUSG00000001785.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCGCAGGCGCGGGCGCT	NA	False	NA	NA	False	NA	NA	NA	85724963	85707728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_85707877_85710139_85710201_85710312_85710496_85712159_85712247_85712345_85712446_85714341_85714453_85715124_85715255_85715691_85715752_85717862_85717962_85718732_85718797_85720326_85720438_85721472_85721562_85721657_85721782_85723085_85723187_85723887_85724698_85724775
14007	chrX	-	3471	15	FSM	ENSMUSG00000036932.15	ENSMUST00000143466.8	3364	15	-117	10	16	-9	multi-exon	FALSE	canonical	3	1039	junction_8	81.8778333362378	3	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTTCAGTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	47602420	47563830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
14012	chr4	+	3136	17	NNC	ENSMUSG00000028703.15	novel	3065	10	NA	NA	7522	26581	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCGACTCCGGTATCTT	NA	False	NA	-31	True	NA	NA	NA	115954200	115980821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115954569_115954654_115954823_115955683_115955862_115956136_115956212_115956530_115956945_115957464_115957595_115957734_115957808_115959022_115959152_115962953_115963105_115967164_115967291_115967514_115967804_115967885_115967953_115968386_115968522_115969675_115969738_115976033_115976155_115980092_115980180_115980258
14014	chr5	+	3326	19	FSM	ENSMUSG00000014668.16	ENSMUST00000198066.5	3201	19	-126	1	-90	-1	multi-exon	FALSE	canonical	3	66	junction_2	86.3223931292197	523	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTGTGTTGTACTCCT	NA	False	NA	NA	False	NA	NA	NA	110283617	110319834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110283801_110283916_110284061_110287982_110288056_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
14015	chr7	-	1697	15	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	511.255457532869	11	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	33929712	33901581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902100_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
14017	chr10	+	2336	9	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	3	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	323.71725220476	2	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAATTGTGTCATGTGT	NA	False	NA	NA	False	NA	NA	NA	21870584	21875795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21871760_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
14021	chrX	+	2747	26	NNC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	1977	-116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	256.759697772061	1	48	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCACAACCCCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	143102995	143152651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143146970_143147081_143147104_143150894_143150936_143152556
14023	chr2	+	2978	17	NNC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	46	-942	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	132.470500843584	2	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTGGTTACCTCAATAT	NA	False	NA	NA	False	NA	NA	NA	29825485	29849441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29825611_29826021_29826171_29826232_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
14024	chr12	+	3527	21	Fusion	ENSMUSG00000042472.12_ENSMUSG00000072946.13	novel	1386	11	NA	NA	36	-2	multi-exon	FALSE	canonical	1	5	junction_9	81.548927031568	3	59	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCACCTCTTTGGCTCTT	NA	False	NA	NA	False	NA	NA	NA	84332222	84390492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84385824_84386028_84386875_84387004_84389768
14026	chr12	+	3418	8	NIC	ENSMUSG00000032705.10	novel	3310	9	NA	NA	-39	-13	intron_retention	FALSE	canonical	3	173	junction_6	22.1018052637871	355	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAAGCACAAAGCTCAGT	2749	False	NA	NA	False	NA	NA	NA	80509954	80544883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80538005_80539315_80539673_80543554
14027	chr17	-	2823	22	FSM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	7	2396	7	113	multi-exon	FALSE	canonical	3	500	junction_14	40.675587289682	1017	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGAGTCCCTTGTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	24926627	24919318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
14028	chr16	-	6196	10	FSM	ENSMUSG00000022772.13	ENSMUST00000231360.2	6332	10	136	0	12	0	multi-exon	FALSE	canonical	3	47	junction_4	8.64670064815276	102	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTTCTGTTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	31821969	31778489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821809
14029	chrX	-	2357	11	NIC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	6	intron_retention	FALSE	canonical	3	1250	junction_10	83.9895231561651	2070	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	100128978	100122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
14030	chr19	-	5448	31	Antisense	novelGene_ENSMUSG00000089151.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	108	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCACCCTCGGAGCCCC	NA	False	NA	NA	False	NA	NA	NA	34953135	34899877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_34899948_34902017_34902177_34906262_34906363_34906451_34906539_34907081_34907221_34908952_34909193_34912307_34912528_34913022_34913136_34914174_34914247_34914343_34914485_34914713_34914869_34915650_34915939_34917185_34917318_34917478_34917632_34918732_34918841_34919905_34919941_34924981_34925129_34927141_34928375_34928890_34929028_34930268_34930389_34932109_34932171_34933348_34933474_34934813_34934942_34936811_34936971_34943445_34943624_34945515_34945625_34947317_34947516_34949794_34949897_34950256_34950408_34951825_34951970_34952891
14031	chr1	+	2323	20	NIC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	103	-10	combination_of_known_splicesites	FALSE	canonical	1	4	junction_8	155.622883903557	2	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTATATCATTTCTTGTG	425	False	NA	NA	False	NA	NA	NA	72346688	72434101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
14032	chr16	-	3173	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24744	2	-9941	-2	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	1	104	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACGCATTCCTGCAACC	NA	False	NA	NA	False	NA	NA	NA	22230520	22200067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
14034	chr8	-	3671	18	NNC	ENSMUSG00000052488.8	novel	3713	18	NA	NA	15	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	203.319238643981	1	102	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTCCTCTAGCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	73228942	73214329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215944_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217153_73217940_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
14035	chr7	-	1512	1	Antisense	novelGene_ENSMUSG00000063902.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGATTCGAGCGGGAGCT	NA	False	NA	NA	False	NA	NA	NA	83407007	83405495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83405500_83407000
14036	chr9	+	4124	22	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	16	0	intron_retention	FALSE	canonical	3	72	junction_21	38.6895897334347	18	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	5752	False	NA	NA	False	NA	NA	NA	21249139	21266324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
14037	chr5	+	2309	15	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	20	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	202.365652082702	987	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAAGGTTTATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	64250312	64285695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119_64285218_64285258
14038	chr4	-	2435	13	NIC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	31	-8	intron_retention	FALSE	canonical	3	1463	junction_9	210.524526810747	25	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	8861	False	NA	NA	False	NA	NA	NA	129436453	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
14039	chr6	-	3800	10	NNC	ENSMUSG00000045962.17	novel	8163	26	NA	NA	67	58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5.61303597347337	4	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATACAAGTGAGAGCTGAA	8699	False	NA	NA	False	NA	NA	NA	119924999	119901523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923342_119924926
14040	chr11	-	3593	12	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	159	-139	intron_retention	FALSE	non_canonical	0	0	junction_9	348.780851889303	4	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	88755253	88721756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88733162_88734094_88734665_88736554_88736692_88755222
14041	chr19	-	3153	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	397.721117744582	2	104	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGAGTACTGGCTAACT	3918	False	NA	NA	False	NA	NA	NA	5345431	5323966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324546_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
14042	chr9	+	3425	10	FSM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	8	-894	8	894	multi-exon	FALSE	canonical	3	99	junction_1	15.5737988261228	891	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGTAAAGAATTGTT	NA	False	NA	NA	False	NA	NA	NA	46194313	46211302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
14044	chr4	-	2925	8	NIC	ENSMUSG00000028896.14	novel	2285	10	NA	NA	1	-6	intron_retention	FALSE	canonical	3	372	junction_7	39.3326991762553	5	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAATGGGCTTTGTTTTT	5482	False	NA	NA	False	NA	NA	NA	132073015	132059239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
14045	chr12	+	2219	9	NNC	ENSMUSG00000021134.18	novel	1498	8	NA	NA	3	0	intron_retention	FALSE	canonical	2	13	junction_2	872.5907456391	3	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992310	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992447_80993349_80993495_80993889_80994156_80994269_80994369_80994569_80994640_80994902_80995437_80995868_80995943_80996267_80996379_80996493
14047	chr11	-	3595	7	FSM	ENSMUSG00000017615.13	ENSMUST00000108277.3	3768	7	116	57	55	-57	multi-exon	FALSE	canonical	3	137	junction_6	14.2789666604026	270	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCATGTTTCCAGTGAGC	NA	False	NA	NA	False	NA	NA	NA	78427042	78413732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426911
14051	chr17	-	3240	15	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	204.703169870674	1	87	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACTGTGGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	29226915	29189858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219043_29219094_29219116_29226684
14052	chr7	-	1899	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	5	104	5	-103	multi-exon	FALSE	canonical	3	790	junction_6	144.155948541848	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCGGTGGCTCTGGGTGGT	NA	False	NA	NA	False	NA	NA	NA	78798796	78783619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
14054	chr18	-	3967	8	NNC	ENSMUSG00000040446.5	novel	4299	7	NA	NA	-22	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	98.6508996411082	158	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAAGAGTTTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	24663173	24618021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24618344_24618582_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
14055	chr5	-	2634	18	NNC	ENSMUSG00000029472.14	novel	2404	17	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	576.885037092107	65	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTGCATCCTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	122959366	122925522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042_122959239_122959288
14056	chr9	+	3400	22	NNC	ENSMUSG00000032612.15	novel	3662	22	NA	NA	-3	-31	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	155.783616428019	20	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTAGCTCTCCCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	108225092	108269688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249925_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
14057	chr2	+	2879	8	NNC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	243	360	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_3	235.579182060742	6	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATACTGTTGGACTTGCTT	4335	False	NA	NA	False	NA	NA	NA	4886617	4913308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_4886672_4889142_4889417_4896397_4896506_4898028_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
14058	chr2	-	3495	17	FSM	ENSMUSG00000074643.13	ENSMUST00000109608.9	3492	17	-1	-2	-1	0	multi-exon	FALSE	canonical	3	55	junction_15	81.3740399328926	468	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	155953864	155913764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
14061	chr2	+	3898	4	NNC	ENSMUSG00000062175.14	novel	2900	3	NA	NA	1314	-16	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	89.5259118294189	5	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTTTAAAGTCAAACTGA	NA	False	NA	NA	False	NA	NA	NA	156684255	156697474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156685619_156686075_156686302_156695048_156695149_156695265
14062	chr9	+	3363	20	NIC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	172.695126301235	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTGTGTGGGCCTTTT	5866	False	NA	NA	False	NA	NA	NA	21336227	21418434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21336553_21368798_21368873_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
14063	chr19	-	3392	20	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	-12	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	277.113974971768	1	107	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTGCACAGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	40576840	40538705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543099_40543161_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
14064	chr3	+	2359	16	NIC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-1	-106	intron_retention	FALSE	canonical	3	754	junction_14	166.469483356226	3	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAAATCATATGTTAAA	4848	False	NA	NA	False	NA	NA	NA	34074245	34123380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
14065	chr16	+	2633	9	FSM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	32	2	-17	-2	multi-exon	FALSE	canonical	1	87	junction_5	275.38779475496	35	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTCCTATTTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	38383205	38412522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
14066	chr1	+	1227	6	ISM	ENSMUSG00000039748.12	ENSMUST00000194306.6	968	7	-8	2821	-6	1628	5prime_fragment	FALSE	canonical	3	175	junction_2	95.4475772348361	5	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGTACTCTCAATGGG	9760	False	NA	NA	False	NA	NA	NA	175708353	175716806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289
14067	chr12	+	1145	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	41	191	29	-191	multi-exon	FALSE	canonical	3	2699	junction_7	143.152890295656	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAACTTTAGTCCAGCC	NA	False	NA	NA	False	NA	NA	NA	87313512	87320562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
14069	chr8	+	2468	23	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	340.788975809162	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	94941204	95041488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027426_95027484_95027521_95028695_95028854_95030227_95030293_95030853_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
14070	chr1	-	3009	15	Genic_Genomic	ENSMUSG00000100954.6	novel	2498	1	NA	NA	-18733	-1788	multi-exon	TRUE	non_canonical	0	0	junction_1	0	48	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCGCCGCACTCCCTCGCA	NA	False	NA	NA	False	NA	NA	NA	151239715	151220272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_151220505_151225124_151225354_151226730_151226855_151227297_151227475_151227580_151227655_151229668_151229843_151230382_151230509_151231877_151231983_151235367_151235501_151235701_151235926_151236465_151236590_151236681_151236808_151236891_151237026_151237212_151237386_151238861
14071	chr2	+	3587	18	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	0	intron_retention	FALSE	canonical	3	327	junction_7	32.2673734754389	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGTTGTATGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	130266273	130285654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130281446_130281539_130281635_130281760_130281838_130282150_130282663_130282819_130283220_130283314_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
14072	chr6	-	2295	7	NIC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	-10	-43	intron_retention	FALSE	canonical	3	1332	junction_6	190.502333027417	2460	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTCTCTGTCCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	124942485	124935418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
14073	chr16	-	3352	18	NNC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	-10	-2	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_8	69.7305243115326	297	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTCAGGAGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	17540789	17469086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473412_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
14075	chr4	-	2311	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.665829357099	3	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726968	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697766_147698046_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
14076	chr7	+	4633	8	NNC	ENSMUSG00000085105.3	novel	4175	2	NA	NA	2343	16762	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCAAAACTCCACCAGCAA	NA	False	NA	NA	False	NA	NA	NA	33936208	33956394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_33938662_33939167_33939243_33939928_33940071_33941663_33941833_33944392_33945403_33947530_33947656_33953409_33953514_33955839
14077	chr17	+	1729	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	732.756136484407	136	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGTGTCTAGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	29251646	29261872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357_29260604_29260972
14078	chr18	+	2718	8	NIC	ENSMUSG00000024474.8	novel	2349	18	NA	NA	4	438	intron_retention	FALSE	canonical	3	450	junction_4	72.8181968735725	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGGATGTTGACAAAGGT	NA	False	NA	NA	False	NA	NA	NA	36877751	36886945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36877842_36878663_36878731_36880400_36881277_36881603_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314
14079	chr8	+	2549	12	NIC	ENSMUSG00000038482.12	novel	1700	11	NA	NA	18	-3	combination_of_known_junctions	FALSE	canonical	2	31	junction_1	293.361537587219	883	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTCTGTGTTTCTGTAA	2696	False	NA	NA	False	NA	NA	NA	13389343	13428445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_13389441_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
14080	chr2	-	3072	28	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.18885257457751	2	82	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACCAGCGGGCAGCTCG	NA	False	NA	NA	False	NA	NA	NA	146919918	146855044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855117_146866613_146866746_146867113_146867225_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871551_146871656_146871700_146871786_146871895_146876771_146876817_146878578_146878714_146880086_146880171_146882726_146882872_146883906_146884015_146884098_146884182_146884779_146884851_146889552_146889639_146891211_146891308_146891900_146892014_146903159_146903216_146903322_146903451_146905191_146905281_146910711_146910774_146916802_146916942_146919396
14081	chr5	-	2729	14	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	160	-1	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_13	407.745207018003	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCCTGGGTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	24782305	24770343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782023
14082	chr9	+	417	5	FSM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	1510	187	-6	0	multi-exon	FALSE	canonical	3	1046	junction_4	63.2114507031756	1365	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	NA	False	NA	NA	NA	20556123	20558073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
14083	chrX	-	829	1	FSM	ENSMUSG00000080241.4	ENSMUST00000116499.4	451	1	-102	-276	-102	276	mono-exon	FALSE	NA	NA	NA	NA	NA	9399	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	36807852	36807023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36807000_36807900
14085	chr13	+	3462	3	NIC	ENSMUSG00000074794.11	novel	4132	8	NA	NA	59	1	intron_retention	FALSE	canonical	3	173	junction_1	16	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAATTGTTTGGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	81038695	81044155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_81038910_81039180_81039762_81041488
14086	chr4	+	3637	7	NIC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	-2	-7	intron_retention	FALSE	canonical	3	2261	junction_3	111.218628535571	32	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGAGGTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	118478042	118484966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118478195_118478278_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
14088	chrX	+	3894	6	Fusion	ENSMUSG00000067360.13_ENSMUSG00000054994.3	novel	3698	5	NA	NA	20	161	multi-exon	FALSE	non_canonical	0	0	junction_2	93.0255878777447	308	48	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	NA	NA	NA	134203084	134405504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_134203188_134395666_134395794_134399463_134399520_134400016_134400317_134401619_134402205_134402781
14091	chr4	+	3425	12	NNC	ENSMUSG00000034042.17	novel	448	3	NA	NA	-513	-137	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	95.5682439736043	8	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGTGGATTCTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	116414341	116450942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116414487_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
14092	chr10	-	4147	6	NNC	ENSMUSG00000033126.6	novel	4522	5	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.3026313186527	284	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTCTCTCGTGATTCCT	NA	False	NA	NA	False	NA	NA	NA	76304653	76295400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_76297028_76297107_76299154_76300090_76300160_76302070_76302200_76303990_76304221_76304607
14094	chr17	+	2809	6	FSM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	-104	-7	-104	0	multi-exon	FALSE	canonical	3	153	junction_1	55.9335319821661	749	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	775	False	NA	NA	False	NA	NA	NA	23819725	23829993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
14095	chr10	+	1797	5	NNC	ENSMUSG00000025395.15	novel	3128	11	NA	NA	27	-392	intron_retention	FALSE	non_canonical	0	0	junction_3	283.657694237262	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCTGTTGGGAAAGACCC	1035	False	NA	NA	False	NA	NA	NA	127851091	127857598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127854474_127855311_127856136_127857541
14096	chr15	-	4723	25	NIC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	10	1	intron_retention	FALSE	canonical	3	178	junction_20	26.216513031972	9	75	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCAGCTCTCTGCGA	NA	False	NA	NA	False	NA	NA	NA	76524119	76510436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
14098	chr16	+	3128	18	NIC	ENSMUSG00000005899.15	novel	4532	19	NA	NA	0	152	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	66.8520030471689	12	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCTGGGCTGAATCTT	NA	False	NA	NA	False	NA	NA	NA	17437220	17461363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
14099	chr2	-	3457	3	NIC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	-15	-16	intron_retention	FALSE	canonical	3	545	junction_1	28.5	600	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATGACTTAAACTACTTT	NA	False	NA	NA	False	NA	NA	NA	75534848	75505872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_75508922_75509506_75509774_75534707
14100	chr7	-	2625	18	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	7	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	853.149536416617	1	88	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165576	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156430_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126163585_126163778_126163874_126163941_126165250_126165392_126165519
14101	chr6	-	2771	17	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	27	-491	intron_retention	FALSE	canonical	3	590	junction_12	49.8446022654409	49	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAGCCTGGACTCAAATT	-17	True	NA	NA	False	NA	NA	NA	6217091	6041709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
14102	chr17	-	2995	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	13	-1054	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	210.248801646407	1	76	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAGATAACAGATCCCC	8750	False	NA	NA	False	NA	NA	NA	24470308	24442225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468367_24470264
14103	chr11	-	3667	24	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCAAGTCGAAATGGCCA	NA	False	NA	NA	False	NA	NA	NA	78213215	78192464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78192535_78192718_78192847_78194870_78195866_78195967_78196146_78203939_78204014_78204171_78204264_78204382_78204475_78204643_78204763_78204986_78205083_78205168_78205281_78205528_78205623_78205784_78205935_78206013_78206115_78206332_78206467_78206723_78206866_78210290_78210403_78210809_78210896_78211154_78211279_78211386_78211497_78211866_78211950_78212087_78212246_78212324_78212399_78212511_78212591_78212951
14104	chr12	+	2528	4	Intergenic	novelGene_4307	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4.18993502999218	3	33	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCAATTTACAGCTACA	NA	False	NA	NA	False	NA	NA	NA	19236635	19250583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_19236734_19246625_19246802_19247002_19247064_19248390
14105	chr11	-	3601	13	NNC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	1	-9	intron_retention	FALSE	canonical	0	0	junction_4	289.949804084929	20	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTGAATGTTAATGTGT	NA	False	NA	NA	False	NA	NA	NA	59730663	59708629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59714574_59714651_59714872_59714921_59715100_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
14106	chr15	-	1964	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	371	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	301	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83056422	83037697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038769_83038852_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
14109	chr7	-	4182	6	NIC	ENSMUSG00000030741.16	novel	2017	11	NA	NA	5	-6	intron_retention	FALSE	canonical	3	348	junction_3	52.3236084382566	8	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGACTCCTGACTGACTG	NA	False	NA	NA	False	NA	NA	NA	125976578	125969244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125973246_125974238_125974376_125975845_125975912_125976008
14110	chr2	+	1894	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	44	junction_5	805.63863448509	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118574_130119395_130119545_130119768_130119891_130120075_130120211_130120816
14111	chr15	+	3358	21	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	75.3023240013215	824	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775627	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57775788_57779365_57779513_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
14112	chr5	+	4027	18	NNC	ENSMUSG00000028999.16	novel	3298	15	NA	NA	0	1166	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	28.1256449368577	381	16	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAACTGAGCTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	23992718	24026533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385_24025587_24025680_24025718_24025885_24026118_24026282
14113	chr11	-	1997	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-1014	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1274.13335644272	2	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACTGAATTAAGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	106677890	106672380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676350_106677064_106677186_106677273_106677371_106677734
14114	chr15	-	1849	11	NIC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	18	-20	combination_of_known_junctions	FALSE	canonical	3	46	junction_10	1800.94970779309	113	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTAACTGCTTCCACTTA	132	False	NA	NA	False	NA	NA	NA	31601667	31590965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601447
14116	chr7	-	4328	14	NNC	ENSMUSG00000035547.15	novel	4498	13	NA	NA	96	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	59.8467470803107	3	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGATCTGTCTGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	97827385	97770771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97784999_97785058_97785176_97801018_97801151_97811122_97811310_97827250
14117	chr4	-	2217	5	NNC	ENSMUSG00000066000.13	novel	2558	5	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	198.993718493826	1	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTTGCTTGTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	147726962	147696392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698226_147699797_147699864_147702873_147702956_147725368_147725463_147726820
14118	chr8	-	4006	7	NIC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	0	-5	intron_retention	FALSE	canonical	3	422	junction_2	44.8234189781289	18	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTACTTTTGGTACT	NA	False	NA	NA	False	NA	NA	NA	83500774	83490254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83499641_83500685
14120	chr8	+	2530	13	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	-117	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	308.678219276248	883	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	1986	False	NA	NA	False	NA	NA	NA	13388633	13428442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388656_13388747_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
14121	chr1	-	3545	22	FSM	ENSMUSG00000026425.16	ENSMUST00000186543.7	3533	22	-16	4	-11	-1	multi-exon	FALSE	canonical	3	29	junction_1	23.367225143015	37	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGAGGTTGCCAGATCT	NA	False	NA	NA	False	NA	NA	NA	131455101	131222959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_131223278_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
14125	chr12	-	3499	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	14	0	14	0	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	586	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTGGTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	3359955	3297427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
14126	chr2	+	4729	26	NIC	ENSMUSG00000035437.16	novel	4847	26	NA	NA	-17	-1	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	48.8404094986928	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTGCTTCATACAAAAGT	NA	False	NA	NA	False	NA	NA	NA	37342239	37456448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_37342314_37359527_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37445717_37445811_37446207_37446319_37450486_37450592_37451380_37451465_37451903_37451976_37453447_37453646_37454776
14127	chr7	-	2938	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	-33	0	-33	0	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	526	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	9898	False	NA	NA	False	NA	NA	NA	19655118	19637502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
14128	chr15	+	3724	9	Antisense	novelGene_ENSMUSG00000022195.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	237	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCTCACCCGGTTGCGC	NA	False	NA	NA	False	NA	NA	NA	12808496	12824727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_12810929_12812016_12812157_12814274_12814343_12815934_12816057_12816404_12816471_12817945_12818370_12821488_12821640_12823646_12823795_12824554
14129	chr10	-	1765	15	ISM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	770	79	331	-74	3prime_fragment	FALSE	canonical	3	1936	junction_8	214.938778659014	2	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTCCATACAATTCAGT	NA	False	NA	NA	False	NA	NA	NA	116898949	116886984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880
14130	chr1	+	3946	30	NNC	ENSMUSG00000041763.15	novel	4649	30	NA	NA	-9	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	103.766808446041	22	30	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTGGCGTGTGGCTTAA	3321	False	NA	NA	False	NA	NA	NA	43973183	44041502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010897_44011750_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
14131	chr11	-	2518	27	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	158.171093043439	14	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	54924251	54869933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872236_54872286_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
14132	chr10	+	2380	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	277.189286997976	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21870589	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872221_21872475_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
14133	chr18	-	3586	4	NNC	ENSMUSG00000052102.16	novel	2085	6	NA	NA	3	0	intron_retention	FALSE	non_canonical	0	0	junction_1	617.366629771609	5	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	NA	False	NA	NA	NA	38472026	38460602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38462026_38466205_38468171_38471143_38471276_38471960
14135	chr9	+	3094	14	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	21	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	405.980397113256	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5533	False	NA	NA	False	NA	NA	NA	35122471	35128306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123369_35123640_35123808_35124015_35124177_35124425_35124580_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
14136	chr11	-	4284	18	NNC	ENSMUSG00000032782.20	novel	3861	19	NA	NA	-56	23	intron_retention	TRUE	canonical	3	15	junction_17	27.828192620044	80	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAGAGTAAATTATTG	NA	False	NA	NA	False	NA	NA	NA	69214657	69190342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213506
14137	chr4	+	2692	25	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	126.255686065574	1	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	148642914	148666858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646832_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
14138	chr9	+	2993	23	NNC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	-18	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	74.5741768391691	515	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGTACAGTGGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	83716723	83754436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83726402_83726481_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
14139	chr16	-	3435	10	Antisense	novelGene_ENSMUSG00000116187.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGACCCGCGGTTGGGCT	NA	False	NA	NA	False	NA	NA	NA	10060914	10010816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_10010888_10019161_10019318_10022466_10022585_10026995_10027133_10028868_10028966_10030514_10030676_10052179_10052253_10054018_10054083_10055028_10055095_10058422
14140	chr8	+	4768	16	NIC	ENSMUSG00000031979.18	novel	2825	18	NA	NA	31	0	intron_retention	FALSE	canonical	3	176	junction_7	27.5764795110294	10	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAGTTATGTATCCAG	NA	False	NA	NA	False	NA	NA	NA	125247588	125278747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
14141	chr17	+	3345	22	FSM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	-9	13	-9	-13	multi-exon	TRUE	canonical	3	146	junction_8	22.4045468336421	2	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTTGGTGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	45817757	45831756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
14142	chr15	-	2644	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	1528.4851702112	1	62	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	450	False	NA	NA	False	NA	NA	NA	36609144	36595904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557_36608903_36609002
14143	chr14	-	4769	19	FSM	ENSMUSG00000022185.20	ENSMUST00000022793.15	4735	19	-42	8	-42	-2	multi-exon	FALSE	canonical	3	51	junction_16	154.301732625911	482	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTAGCATTTGAGTGCCTT	2588	False	NA	NA	False	NA	NA	NA	54924430	54879625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
14145	chr8	+	5305	23	NIC	ENSMUSG00000025812.19	novel	3204	19	NA	NA	5	-5	combination_of_known_junctions	FALSE	canonical	3	22	junction_13	38.6745266068567	88	80	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTTGCTGTGTCTCTA	NA	False	NA	NA	False	NA	NA	NA	128026097	128338762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_128026285_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
14146	chr5	+	2338	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	337.943306741572	102	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815934	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829298
14147	chr5	+	3557	14	FSM	ENSMUSG00000029345.14	ENSMUST00000031288.14	3560	14	3	0	3	0	multi-exon	FALSE	canonical	3	92	junction_4	15.3503464486856	264	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAAGTATATGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	112474226	112485939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_112474340_112475350_112475537_112475827_112476049_112477231_112477386_112477612_112477770_112478956_112479085_112479733_112479887_112480829_112481358_112481440_112481548_112482182_112482352_112482725_112482970_112483438_112483582_112483880_112484047_112484851
14148	chr6	-	3061	3	NIC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	0	113	intron_retention	FALSE	canonical	3	761	junction_1	45	1	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTACATATTAAGTTATG	NA	False	NA	NA	False	NA	NA	NA	72416539	72411414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72413013_72413179_72414432_72416328
14149	chr5	-	3037	5	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	216	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	32.9165611812656	2	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCCATGGTCATGGTA	6347	False	NA	NA	False	NA	NA	NA	109838691	109822412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109823004_109823089_109825258_109826379_109826441_109826628_109826756_109838601
14151	chr9	+	1889	6	NIC	ENSMUSG00000007815.14	novel	852	6	NA	NA	2	4	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	605.847967727878	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTATTCTCTTGTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	108184029	108215137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108184143_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
14152	chr3	-	3248	10	NNC	ENSMUSG00000000563.18	novel	1604	8	NA	NA	-9277	-919	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	592	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGTACCTCTGCGCAAC	NA	False	NA	NA	False	NA	NA	NA	105876692	105866825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_105867012_105867263_105867453_105868930_105869074_105869329_105869379_105871755_105871827_105871936_105871995_105872395_105872468_105873079_105873275_105873670_105873742_105874478
14154	chr2	+	3325	12	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	4	-7	intron_retention	FALSE	canonical	3	502	junction_9	50.2112891063256	668	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCCAGATATTTTACTC	NA	False	NA	NA	False	NA	NA	NA	174257647	174269288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
14155	chr3	+	2116	9	NIC	ENSMUSG00000078578.10	novel	1512	8	NA	NA	-30	-3	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	1172.72364604795	2207	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATTGGATTGTTTGACA	NA	False	NA	NA	False	NA	NA	NA	135144046	135172431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135162361_135162406_135164558_135164637_135165735_135165842_135168710_135168805_135170955
14156	chr13	+	2875	12	NNC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	7	-362	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	236.923986136085	4	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGCAAGGTGATAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	120152006	120169256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924_120168692_120168733
14157	chr18	+	4142	2	FSM	ENSMUSG00000117869.2_ENSMUSG00002076696.1	ENSMUST00000235976.2	613	2	-2721	-808	-4	-112	multi-exon	FALSE	canonical	3	202	junction_1	0	52	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAATTTATATTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	35686470	35691257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35689745_35690389
14159	chr16	+	3400	12	NNC	ENSMUSG00000053774.10	novel	10313	11	NA	NA	3	-1130	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_8	62.5899683034862	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGTTCTCTCTTTTGAT	8255	False	NA	NA	False	NA	NA	NA	32151077	32205583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32198578_32198651_32200079_32200474_32200583_32200664_32203591
14160	chr8	+	4122	23	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	14	417	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	54.9261901431035	7	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCTCTCAAGTAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	85809957	85825328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85810118_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
14161	chr3	-	2892	17	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	4	13	intron_retention	TRUE	non_canonical	0	0	junction_6	209.354877764407	1	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGAGTCCGAATGCTTT	NA	False	NA	NA	False	NA	NA	NA	95662191	95647274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653171_95653340_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655867_95657650_95657730_95658012_95658078_95658149_95658943_95660318_95660443_95661630_95661828_95662069
14162	chr19	-	3063	24	NIC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	-42	-166	combination_of_known_splicesites	FALSE	canonical	2	22	junction_23	173.343774829706	5	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTATAAAATCTTATAGATG	NA	False	NA	NA	False	NA	NA	NA	37340052	37247994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37339912
14163	chr2	+	1812	7	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	285.471345127473	1	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTTCTTCTTCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	154713341	154730229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720408_154730137
14164	chr10	+	3629	4	NNC	ENSMUSG00000073427.5	novel	3330	4	NA	NA	2	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.0433880705538	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATGTTGTCATCCATT	NA	False	NA	NA	False	NA	NA	NA	82190131	82215477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_82190490_82204404_82204532_82204731_82204793_82212394
14165	chr2	-	3159	29	FSM	ENSMUSG00000027185.16	ENSMUST00000028608.13	3879	29	87	633	12	-228	multi-exon	FALSE	canonical	3	271	junction_25	29.5459474413003	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAGCAAGAAGTTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	103591528	103552233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
14166	chr11	-	2958	7	NNC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	-15	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.297531641572	3	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTTTCTTTTAGTCT	NA	False	NA	NA	False	NA	NA	NA	54678516	54608297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54610349_54610458_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
14167	chr1	+	2291	7	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-18	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	289.738819168805	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTTATCGATTGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	4878100	4916951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878154_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
14168	chr19	-	2032	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-19	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	900.645961479312	6	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3744	False	NA	NA	False	NA	NA	NA	7017354	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999144_6999441_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
14170	chr10	-	1993	11	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	12	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	673.526606749874	32	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACATTTTAATGTGTATG	NA	False	NA	NA	False	NA	NA	NA	93725658	93696785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698918_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
14171	chr7	+	2624	3	ISM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	33458	3	2191	-1	3prime_fragment	FALSE	canonical	3	122	junction_2	6	90	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTTGCATGTTTATTT	9923	False	NA	70	True	NA	NA	NA	35129937	35138111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_35132033_35134898_35135069_35137752
14172	chr7	-	1768	3	Antisense	novelGene_ENSMUSG00000108878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGGTCCGAGGCACACA	NA	False	NA	NA	False	NA	NA	NA	83548366	83541557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83541682_83544735_83544969_83546955
14173	chr1	-	2225	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	70	7	70	-5	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	1015	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAAGTGTTTATTATGT	NA	False	NA	NA	False	NA	NA	NA	65218270	65197781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
14174	chr16	-	2744	12	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	485.167143389568	2	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCATAACTGTATCATTG	8120	False	NA	NA	False	NA	NA	NA	4867717	4831774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847226_4865643_4865678_4866093_4866218_4866613_4866651_4867669
14176	chr13	-	2681	7	NNC	ENSMUSG00000074863.6	novel	2859	7	NA	NA	-5212	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	98.0272071076869	21	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	4640	False	NA	NA	False	NA	NA	NA	62854072	62819597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62821755_62823062_62823124_62823332_62823460_62839228_62839324_62849254_62849306_62853514_62853576_62853943
14177	chr7	-	1903	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	138	843	44	-14	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTAGAGGAGGCATGGG	NA	False	NA	NA	False	NA	NA	NA	33929623	33901597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
14178	chr2	+	7801	23	FSM	ENSMUSG00000061186.16	ENSMUST00000041105.7	7874	23	63	10	63	2	multi-exon	TRUE	canonical	3	38	junction_1	8.61768314629387	88	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTATGGTGGTGTT	4766	False	NA	NA	False	NA	NA	NA	10377323	10600054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135_10466284_10528755_10528839_10535301_10535426_10547743_10547858_10552241_10552285_10561029_10561104_10562378_10562522_10573171_10573282_10580146_10580323_10582339_10582439_10582625_10582943_10583945_10584204_10585354_10585484_10595240
14179	chr10	+	2578	3	NNC	ENSMUSG00000038587.11	novel	6195	4	NA	NA	-20	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	831.5	8	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGCTTCACTTATATTC	NA	False	NA	NA	False	NA	NA	NA	4216359	4309454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4216523_4306501_4307940_4308477
14180	chr7	-	2222	7	NIC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-31	-5	intron_retention	FALSE	canonical	3	1941	junction_2	107.064492505945	8	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGATCTCTATTGGTGTG	8834	False	NA	NA	False	NA	NA	NA	141941625	141929658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141930669_141930762_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
14182	chr9	+	2265	14	NNC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	485.66204432895	25	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	25163909	25219862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808_25219647_25219729
14183	chr19	+	3301	10	NNC	ENSMUSG00000024976.15	novel	3664	9	NA	NA	31	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	163.025408911057	5	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTGTGTGTGTGGTGTT	3389	False	NA	NA	False	NA	NA	NA	53932767	54021563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53932834_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498_54020641_54021237
14184	chr19	-	2745	17	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	428.937418038751	30	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	8740	False	NA	NA	False	NA	NA	NA	60779095	60749554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60749741_60758357_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
14185	chr18	-	1965	10	NNC	ENSMUSG00000024587.11	novel	2482	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1588.58502921994	32	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649576	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638043_64644855_64644949_64645054_64645121_64648396_64648480_64649486
14186	chr11	+	1798	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	243	443	110	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940761	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
14187	chr11	+	4635	17	NIC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	-1	-17	intron_retention	FALSE	canonical	3	8	junction_9	47.3042017161267	1	112	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATTTAATGTAGTCCTT	2846	False	NA	NA	False	NA	NA	NA	78192448	78213266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78206117_78206334_78206469_78206725_78206868_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
14188	chr7	-	1377	11	NIC	ENSMUSG00000054662.9	novel	3088	23	NA	NA	-37	-3200	intron_retention	FALSE	canonical	3	117	junction_6	25.4393396140702	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGTGAAGCAGCAGGTGAC	NA	False	NA	NA	False	NA	NA	NA	140697756	140687160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
14189	chrX	+	2240	9	NNC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_5	467.123845998039	56	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72235816	72246536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241732_72241891_72241992_72243351_72243451_72245455_72245552_72245645
14193	chrX	-	1550	5	ISM	ENSMUSG00000036932.15	ENSMUST00000156795.2	1025	6	89	2	89	-2	intron_retention	FALSE	canonical	3	1158	junction_4	76.8029133562002	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGGTTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	47571684	47563823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841
14195	chr17	-	5675	5	FSM	ENSMUSG00000059142.17	ENSMUST00000088696.13	5683	5	2	6	2	-6	multi-exon	FALSE	canonical	2	11	junction_3	9.36416040016402	56	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAACTTTTGCCTGTT	NA	False	NA	NA	False	NA	NA	NA	23086077	23066461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23071741_23076223_23076351_23080479_23080536_23084220_23084311_23085954
14196	chr12	+	3186	12	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	84	-4	intron_retention	FALSE	canonical	2	4	junction_10	270.772418239633	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTAAAAAAAGTGTGAAGT	473	False	NA	NA	False	NA	NA	NA	109609348	109628139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109609896_109611695_109611766_109612280_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623266_109626156_109626242_109627179
14197	chr3	-	4249	12	Intergenic	novelGene_3198	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGCTTCTCACGCCCCGA	NA	False	NA	NA	False	NA	NA	NA	152494653	152419767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_152419863_152422696_152422752_152428120_152428214_152443819_152443957_152445763_152445876_152448123_152448222_152450080_152450198_152450348_152450462_152453237_152453409_152472073_152472158_152491029_152491868_152492317
14198	chr2	-	2714	17	NNC	ENSMUSG00000027071.15	novel	1764	13	NA	NA	-9647	-5134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCACGGACCATAGAGAGG	9573	False	NA	NA	False	NA	NA	NA	84877453	84867531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84867673_84868138_84868313_84868695_84868881_84870215_84870322_84870606_84870798_84870900_84871133_84871261_84871367_84871451_84871598_84871860_84871997_84872584_84872658_84873034_84873173_84873296_84873346_84874662_84874791_84875751_84875923_84876025_84876118_84876600_84876782_84876987
14199	chr10	-	3225	8	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-15	-4	intron_retention	FALSE	non_canonical	0	0	junction_3	407.52167840171	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCAGCTGTAGAGTGAAT	8232	False	NA	NA	False	NA	NA	NA	128540915	128533818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128535080_128535340_128535545_128535844_128536537_128536950_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
14201	chr2	+	2329	10	NIC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	27306	-1418	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	49.1372479469747	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCTCATTTTTATACAAC	1045	False	NA	NA	False	NA	NA	NA	152096138	152122354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152120888
14202	chr18	-	5446	28	NNC	ENSMUSG00000024456.17	novel	5596	28	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	24.9769166408386	357	42	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCTCTAGCCTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	38068417	37976653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_37978552_37984603_37984691_37986355_37986492_37986596_37986760_37987530_37987658_37988526_37988657_37988765_37989006_37989226_37989329_37989505_37989601_37993467_37993576_38022750_38022866_38023529_38024020_38024073_38024223_38024926_38025026_38026402_38026468_38027146_38027263_38028234_38028352_38029147_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
14203	chr11	-	1860	9	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1408.24455772959	11	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9604	False	NA	NA	False	NA	NA	NA	106679370	106672373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676085_106677775_106677901_106679098
14204	chr18	+	2356	13	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	-15	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	465.267926098023	7	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	68433447	68454978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433493_68436618_68436772_68437595_68437762_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
14205	chr5	+	2596	2	Intergenic	novelGene_769	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	32	junction_1	0	1	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTGTGTGTGTTGAATT	NA	False	NA	NA	False	NA	NA	NA	104728351	104732484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104728481_104730017
14206	chr2	+	3764	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	54	0	intron_retention	FALSE	canonical	3	25	junction_13	189.490317026791	1	92	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	547	False	NA	NA	False	NA	NA	NA	31462716	31507531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31502248_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
14207	chr1	+	2279	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-7	intron_retention	FALSE	canonical	0	0	junction_13	641.925006745893	3	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724146	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749700_59749812_59750429
14209	chr4	-	2565	7	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	573.554899048227	13	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327182	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310465_141317305_141317437_141322534_141322791_141323205_141323260_141327158
14211	chr12	+	4569	6	NIC	ENSMUSG00000021072.13	novel	2795	8	NA	NA	-1006	-417	intron_retention	FALSE	canonical	3	450	junction_5	49.8260975794814	8	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATGTTGAAGAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	70501805	70514397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_70502902_70503354_70503401_70505552_70507165_70507252_70507355_70511173_70511241_70512751
14212	chr16	-	2089	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
14213	chrX	-	4108	6	FSM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	30	-590	30	590	multi-exon	FALSE	canonical	3	96	junction_1	13.1666244725062	270	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATCTTAAAACAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	20816817	20799043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20816678
14214	chr3	-	3140	10	NNC	ENSMUSG00000000001.5	novel	3262	9	NA	NA	55	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	143.362787671309	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTGTCTCTGCACACC	NA	False	NA	NA	False	NA	NA	NA	108053407	108014611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108015578_108015628_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
14215	chr18	+	3108	10	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	97.7011063030481	553	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTAGACACGGTGTCC	963	False	NA	NA	False	NA	NA	NA	38429724	38450897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38429852_38430518_38430629_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
14216	chr8	-	3894	16	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	55.184377821586	1	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCAAATAAAAATATAAAAA	NA	False	NA	NA	False	NA	NA	NA	47070227	47028656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47066759_47066893_47070168
14217	chr2	+	2739	23	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	-7	intron_retention	FALSE	canonical	3	154	junction_14	56.5337060288406	2	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAATAGTTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	130266273	130285647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282949_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
14218	chr2	+	3484	12	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	5.80680706278957	593	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGCGTGTCGGTGCTGTG	2739	False	NA	NA	False	NA	NA	NA	30023799	30042019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038697_30038796_30038942_30039001_30039711
14219	chr11	-	3188	11	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	38.2758409443868	418	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1349	False	NA	NA	False	NA	NA	NA	61157995	61135678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61137148_61138754_61138868_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
14220	chr11	-	1844	4	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	-162	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644703	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642441_48643101_48643323_48644153_48644407
14221	chr5	-	4099	34	Antisense	novelGene_ENSMUSG00000099047.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	23	10	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCGCTTCCGGAGCGCT	NA	False	NA	NA	False	NA	NA	NA	115737279	115703329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115703361_115709462_115709569_115712635_115712699_115713220_115713354_115714176_115714285_115716947_115717048_115717132_115717268_115717691_115717760_115717839_115717955_115718563_115718639_115719061_115719184_115719541_115719593_115719832_115719937_115720317_115720495_115721454_115721609_115723863_115723956_115725845_115725924_115726034_115726193_115726990_115727178_115727253_115727382_115728300_115728481_115729030_115729125_115730121_115730236_115730365_115730565_115731633_115731788_115732087_115732272_115732519_115732575_115733048_115733138_115733354_115733494_115734912_115735041_115735122_115735315_115735432_115735502_115736757_115736924_115737128
14222	chr6	-	2102	9	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	131	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1340.26974313942	7	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGAGATAAACTCTGGAT	8616	False	NA	NA	False	NA	NA	NA	145021779	144944890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945984_144955828_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
14223	chr16	-	4246	22	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	-2	-8	intron_retention	FALSE	canonical	3	32	junction_4	33.0351973361527	31	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATAGTTTTGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	10994208	10954463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963105_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
14225	chr1	-	1805	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3206.6269010972	1	18	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287098	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278386_86279088_86279216_86279919_86280042_86280231_86280356_86280850_86281003_86281453_86281578_86282741_86282845_86283846_86283916_86284092_86284180_86284277_86284464_86284678_86284730_86284971_86285175_86285828_86285946_86286927
14226	chr17	+	2243	2	Intergenic	novelGene_68	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACATGATCAAACTGGAG	NA	False	NA	NA	False	NA	NA	NA	22235244	22237574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_22235622_22235708
14227	chr2	+	2260	8	ISM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	2757	1	2526	-1	3prime_fragment	FALSE	canonical	3	1115	junction_2	75.3408580914711	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	72309259	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
14228	chr16	-	2084	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	9	0	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
14229	chr17	+	3889	26	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	434	junction_1	113.385261828864	393	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8545	False	NA	NA	False	NA	NA	NA	35354210	35366281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
14230	chr1	-	3468	14	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_11	602.250031624504	1	131	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	181669926	181642899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663646_181663854_181665942_181666122_181669852
14232	chr1	-	3693	21	NNC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	73	-6	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_18	55.1112284384952	44	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCATTTTGCTTTTCCG	NA	False	NA	NA	False	NA	NA	NA	151304114	151243455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151298287_151298391_151299257_151299357_151304047
14233	chr3	+	1970	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	7	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	2	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3811	False	NA	NA	False	NA	NA	NA	88204429	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
14235	chr11	-	2965	18	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-1	-846	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	117.663998780411	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGGTATTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	79853217	79825624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846538_79848151_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
14236	chr6	-	4211	25	ISM	ENSMUSG00000030279.16	ENSMUST00000203187.3	3494	26	222	-803	0	-2	3prime_fragment	FALSE	canonical	3	13	junction_3	32.8933461694341	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATTCCTAACTCTTTGC	NA	False	NA	NA	False	NA	NA	NA	143045575	142956655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_142957863_142958927_142959075_142963608_142963800_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403
14237	chr3	+	2730	20	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-561	31035	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCCGCGCCGCCCCTGTCA	NA	False	NA	NA	False	NA	NA	NA	89907860	89959787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908299_89909585_89909784_89910551_89910623_89915565_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928682_89946189_89946324_89951006_89951118_89952160_89952238_89955075_89955207_89959761
14238	chr17	+	2113	5	Intergenic	novelGene_48	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_4	98.7253133699762	1	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCCCAAGTATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	17399589	17426649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17422956_17423084_17423325_17423387_17424679_17425396_17425564
14240	chrX	-	2873	3	NIC	ENSMUSG00000025283.16	novel	1352	6	NA	NA	-34	-9	intron_retention	FALSE	canonical	3	1236	junction_2	39.5	89	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTCAGCCTGAGCATT	NA	False	NA	NA	False	NA	NA	NA	153999375	153996136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_153998681_153998780_153998833_153999098
14242	chr10	+	2254	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	38	2	0	-2	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	984	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGATTTCTTTGTTTT	1329	False	NA	NA	False	NA	NA	NA	77417591	77434564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
14243	chr1	-	5293	32	FSM	ENSMUSG00000005501.15	ENSMUST00000187758.7	3977	32	-13	-1303	3	-19	multi-exon	FALSE	canonical	3	37	junction_30	6.87528260700014	75	36	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAAGTTGCAGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	87936269	87872861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_87874430_87876223_87876319_87877653_87877750_87877880_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893027_87893065_87894905_87894993_87895231_87895321_87896117_87896172_87901798_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
14244	chr6	-	2394	8	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	0	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	286.687414215183	10	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAAACTGTGTCTATTA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72411206_72412284_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
14245	chr12	+	3063	21	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	-17	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	64.0439497532749	387	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCTACTGGCTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	17398441	17480089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418277_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
14246	chr14	+	3871	9	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-13	-1889	intron_retention	FALSE	non_canonical	0	0	junction_6	182.759917651546	12	66	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52517060	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52524447_52524757_52524989_52528217_52528299_52528931_52529199_52529311_52529676_52529976_52530141_52530657
14247	chr3	-	2580	20	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	0	181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	300.8237536298	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCCTTTCCTTCACTT	3547	False	NA	NA	False	NA	NA	NA	89959782	89907938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928669_89946243_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
14249	chr3	+	2087	17	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_14	318.799677501405	4	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4846	False	NA	NA	False	NA	NA	NA	34074243	34123487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118315_34118469_34122309_34122402_34123065
14250	chr2	+	4041	4	ISM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	15391	3	2776	-3	intron_retention	FALSE	canonical	3	1406	junction_2	67.9264307909668	3	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTGTTCCATATAAGT	NA	False	NA	NA	False	NA	NA	NA	27420559	27426544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_27421727_27423004_27423039_27423348_27423424_27423779
14251	chr12	-	1300	1	FSM	ENSMUSG00000066632.4	ENSMUST00000085735.4	1255	1	-75	30	-75	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGGATGCTCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	10950315	10949015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_10949000_10950300
14252	chr11	-	1467	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTTTGAGCCCGACTCG	5985	False	NA	NA	False	NA	NA	NA	120655206	120653739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120653700_120655200
14253	chr8	+	2625	5	NNC	ENSMUSG00000052446.18	novel	2713	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	174.168560595763	100	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72704920	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742_72723506_72723587
14254	chr4	-	2459	8	FSM	ENSMUSG00000028692.15	ENSMUST00000128010.2	2227	8	-231	-1	53	0	multi-exon	FALSE	canonical	3	1447	junction_2	89.468042407582	117	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	NA	False	NA	NA	NA	116508824	116493706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
14256	chr5	+	4740	1	ISM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	16193	9	15488	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	343	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACTATCGGACCTTTG	NA	False	NA	NA	False	NA	NA	NA	77429530	77434270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_77429500_77434300
14257	chr18	-	5149	8	FSM	ENSMUSG00000024350.7	ENSMUST00000025208.7	5146	8	-7	4	-7	-4	multi-exon	FALSE	canonical	3	57	junction_2	8.80630571852711	284	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCGACTTTATGACTC	NA	False	NA	NA	False	NA	NA	NA	35836181	35804159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35836078
14258	chr2	-	2989	11	NNC	ENSMUSG00000037376.15	novel	2828	11	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	115.942270117503	7	11	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	NA	False	NA	NA	NA	132657910	132646126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652654_132652908_132653019_132653967_132654096_132657723
14259	chr15	-	946	1	FSM	ENSMUSG00000106847.2	ENSMUST00000202826.2	4725	1	3714	65	3714	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTACTATGTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	72678459	72677513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_72677500_72678500
14260	chr11	+	2942	14	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-4	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	215.373516197535	3	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788919	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790190_74791234_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
14264	chr18	+	2292	8	NNC	ENSMUSG00000024317.16	novel	2422	8	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	206.092707492605	932	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGTGCAGTTTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	21135024	21160584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21156140_21156230_21157465_21157574_21159142
14265	chr15	-	3368	6	ISM	ENSMUSG00000023022.15	ENSMUST00000109024.9	4109	8	13578	0	-4432	0	3prime_fragment	FALSE	canonical	3	692	junction_4	132.359510425205	1	107	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	2400	False	NA	NA	False	NA	NA	NA	99704446	99676350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303
14267	chr7	+	3550	20	NNC	ENSMUSG00000038563.15	novel	3608	20	NA	NA	-7	-28	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	34.7098778918725	164	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAGGCATCAGAGAACA	NA	False	NA	NA	False	NA	NA	NA	82297814	82427032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323612_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
14270	chr17	+	3847	6	NNC	ENSMUSG00000034681.18	novel	1646	7	NA	NA	6	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	635.136331821759	13	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGAGTGCTGGTTTTA	907	False	NA	NA	False	NA	NA	NA	24633642	24644868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24641903_24642073_24643518_24644059
14271	chr15	-	4031	12	NNC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	0	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	145.585565990566	1	127	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGATAAAATGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	38519507	38488507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500712_38501643_38501845_38514716_38514854_38519152
14272	chr5	+	2999	16	NNC	ENSMUSG00000028954.12	novel	3269	15	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	189.23476307369	319	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTCTGGTCTGACGCAG	NA	False	NA	NA	False	NA	NA	NA	24890980	24915373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986_24914527_24914634
14273	chr2	+	2832	4	NNC	ENSMUSG00000027424.12	novel	2840	5	NA	NA	78	-8	intron_retention	FALSE	canonical	1	1	junction_3	212.872940715557	34	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGATTCCTAGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	144112938	144122428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_144112993_144113834_144114405_144118234_144118452_144120437
14274	chr5	-	2345	14	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-40	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	588.803811973125	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTAATAACTCTGTAGAGT	2280	False	NA	NA	False	NA	NA	NA	138170120	138162854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165741_138166100_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
14275	chr6	-	2496	6	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	902.960331354595	5	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTGTCTCATGACTTTG	NA	False	NA	NA	False	NA	NA	NA	148847929	148822557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824375_148827496_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
14277	chr9	+	2624	8	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	27	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	203.506305372906	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824672	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884146_77887178_77887232_77888755_77888891_77889946
14278	chr7	+	4915	17	Antisense	novelGene_ENSMUSG00000035401.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	81	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGGCAAGATGGCGACAG	NA	False	NA	NA	False	NA	NA	NA	98238711	98305766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98240091_98242536_98243191_98243956_98244524_98246242_98246394_98259874_98260072_98262185_98262364_98264681_98264825_98268508_98268673_98270590_98270730_98275664_98275924_98279335_98279613_98286465_98286727_98290698_98290876_98295655_98295731_98297011_98297112_98303950_98304058_98305679
14279	SIRV7	-	2418	5	NNC	SIRV7A	novel	2462	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1290.30122452085	2	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGTGTTAATATGAATCA	NA	False	NA	NA	False	NA	NA	NA	147923	1002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_43028_43078_114680_114984_147648
14280	chr8	-	2203	18	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCCGGAAGTACTCCGCG	NA	False	NA	NA	False	NA	NA	NA	107649720	107620263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107620343_107621220_107621384_107624691_107624883_107625072_107625159_107627477_107627564_107630857_107631077_107632756_107632927_107633019_107633110_107634833_107634932_107637571_107637637_107638855_107638981_107639979_107640135_107642785_107642893_107644211_107644307_107645248_107645303_107645352_107645437_107648802_107648913_107649494
14281	chr9	-	3875	6	FSM	ENSMUSG00000032470.18	ENSMUST00000122384.9	1167	6	-202	-2506	-202	-2	multi-exon	FALSE	canonical	3	40	junction_5	190.404411713594	38	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCTGCCTTATTTCCTCT	3492	False	NA	NA	False	NA	NA	NA	99319181	99267474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318933
14282	chr7	-	4267	5	NIC	ENSMUSG00000012640.17	novel	4363	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	30.589009464185	105	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTCATATTGCTTT	NA	False	NA	NA	False	NA	NA	NA	42962697	42945946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960675_42962527
14283	chr7	+	3329	7	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-1	-248	intron_retention	FALSE	non_canonical	0	0	junction_2	340.71379321784	1	105	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	3763	False	NA	NA	False	NA	NA	NA	103874712	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103875188_103876015_103876116_103877354_103877599_103880995_103881097_103881319_103881347_103881573_103883400_103883555
14284	chr6	-	2563	6	NIC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	1538	-1	combination_of_known_junctions	FALSE	canonical	2	41	junction_5	868.91357452856	6	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCTCATGACTTTGTT	NA	False	NA	NA	False	NA	NA	NA	148843495	148822555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148843430
14285	chr8	+	3868	10	NNC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-465	-2	intron_retention	FALSE	non_canonical	0	0	junction_7	114.245782265395	7	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCAGGGCTCACCTCATT	8383	False	NA	NA	False	NA	NA	NA	3684950	3692792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3685531_3685615_3685747_3685831_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3690516_3690731_3691207_3691734_3691821_3691897
14286	chr13	+	3705	7	NNC	ENSMUSG00000038683.17	novel	3136	9	NA	NA	-2	-6	intron_retention	FALSE	canonical	0	0	junction_5	251.993882200871	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTGAAATAATACAGAGC	NA	False	NA	NA	False	NA	NA	NA	41154496	41166477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_41154890_41158212_41158376_41161491_41161762_41162361_41162841_41162923_41164763_41165809_41165934_41166040
14287	chr17	+	1952	6	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	768.912634829211	1	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGAGTTGTGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	29251646	29261867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255282_29257463_29257599_29259748_29259788_29260180_29260268_29260357
14288	chr19	-	2873	6	NIC	ENSMUSG00000025024.8	novel	1992	6	NA	NA	-19	-13	intron_retention	FALSE	canonical	3	6	junction_4	111.316485751213	11	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTTTTTAAAATCTCCAG	NA	False	NA	NA	False	NA	NA	NA	53379028	53367839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_53369033_53369671_53369826_53371987_53373028_53374803_53374988_53377733_53377854_53378846
14289	chr9	-	2797	20	NNC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	431.021096462305	3	43	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64080179	64044425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64045342_64047172_64047259_64051389_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070042_64071624_64071748_64072647_64072741_64074552_64074671_64075894_64075947_64080099
14290	chr11	+	4432	22	FSM	ENSMUSG00000036644.16	ENSMUST00000101270.5	5213	22	13	768	7	-13	multi-exon	FALSE	canonical	3	13	junction_18	41.5114660552835	138	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAAAGCACACT	NA	False	NA	NA	False	NA	NA	NA	50022235	50062844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50054988_50055040_50058995_50059053_50059522_50059630_50061523
14292	chr11	+	3633	26	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	-24	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	587.041212863288	1	139	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTCTTAATCCACACGAAA	NA	False	NA	NA	False	NA	NA	NA	23206016	23246064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206167_23206415_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237342_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
14293	chr8	-	4407	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	-46	-1211	-13	-1	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	1912	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCTGAGTCTGATAACAA	NA	False	NA	NA	False	NA	NA	NA	66939195	66925770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
14296	chr2	-	2644	13	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	68	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGCGGAGGAGGAGACACA	NA	False	NA	NA	False	NA	NA	NA	152122358	152068849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068910_152092374_152092529_152096128_152096236_152099293_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118950_152120884
14297	chr3	-	778	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	-6	4	-3	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	208	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATAAGACTGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	123301985	123301207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_123301200_123302000
14298	chr4	+	4043	19	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	212.435843619482	2	109	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390698	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082_130508142_130508694
14299	chr14	+	2178	4	FSM	ENSMUSG00000021748.10	ENSMUST00000224690.2	482	4	0	-1696	0	352	multi-exon	FALSE	canonical	3	2463	junction_1	122.17564769171	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAATTGAATGTGAGGTAA	NA	False	NA	NA	False	NA	NA	NA	14296835	14300412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443
14300	chr12	+	3466	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-1	-352	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	245.866946854504	2	111	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTTACTATCTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86566753_86566839
14302	chr16	-	3144	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	493.235329070972	1	72	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTACCATAACTGTATC	8113	False	NA	NA	False	NA	NA	NA	4867724	4831778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833277_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865680_4866177_4866218_4866613_4866654_4867669
14303	chr1	-	4570	21	NNC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	20	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	48.832852671127	8	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCGTTGCTTCAGCTTG	NA	False	NA	NA	False	NA	NA	NA	36408216	36374815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387782_36387959_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406849_36407116_36408185
14304	chr1	-	2543	21	Antisense	novelGene_ENSMUSG00000025995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCAGCCGGCTGCCGCC	NA	False	NA	NA	False	NA	NA	NA	45862779	45834734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_45834765_45838175_45838300_45840313_45840385_45841196_45841285_45843031_45843159_45844533_45844608_45845832_45845951_45846828_45846918_45851198_45851359_45852202_45852268_45852352_45852466_45853700_45853876_45855635_45855794_45856420_45856602_45857327_45857423_45857979_45858078_45858648_45858817_45859288_45859349_45861605_45861753_45862040_45862144_45862480
14305	chr1	-	3323	8	NIC	ENSMUSG00000026047.14	novel	2085	9	NA	NA	0	-37	intron_retention	FALSE	canonical	3	275	junction_7	35.8278195409827	19	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTTAAAATTTTTATAAT	NA	False	NA	NA	False	NA	NA	NA	44157925	44146083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44153679_44153853_44154060_44156197_44156404_44157477
14306	chr13	-	3282	15	NNC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	-3	76	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	101.055652479014	558	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGATCCTGTGCTATTGT	NA	False	NA	NA	False	NA	NA	NA	68730243	68709405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716796_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
14307	chr1	+	4338	6	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-23	-330	intron_retention	FALSE	canonical	1	2	junction_5	34.7643495552556	25	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGGTTTGAGATATCATT	NA	False	NA	NA	False	NA	NA	NA	173248140	173293268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173248253_173255324_173255465_173280393_173283182_173287263_173287416_173289472_173289887_173292536
14308	chr3	+	2997	12	NNC	ENSMUSG00000042626.14	novel	2617	12	NA	NA	10	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.644839377663	6	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTGGAAAGTCTGATT	NA	False	NA	NA	False	NA	NA	NA	89325887	89337336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89325977_89329519_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
14309	chr7	-	2925	8	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	28	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.633050574122	34	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTTACTTACTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	42155121	42122811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123149_42124231_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
14311	chr9	+	4054	14	NNC	ENSMUSG00000032050.19	novel	4380	14	NA	NA	135	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	252.770494870195	475	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGAGGTCCGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	51959705	52000030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_51959733_51972131_51972204_51974877_51974962_51976159_51976256_51976944_51977220_51978660_51978745_51979429_51979577_51980106_51980204_51980914_51981079_51984453_51984543_51992312_51992480_51993742_51993836_51996402_51996646_51997614
14312	chr18	-	2286	7	NIC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_6	468.174824896285	1752	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	NA	False	NA	NA	NA	38471999	38460602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471914
14313	chr2	+	1531	13	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	-5	118	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	527.808749822214	36	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTCTTACAGAGCACATG	4159	False	NA	NA	False	NA	NA	NA	127429333	127445893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437278_127437377_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
14314	chr4	+	4554	5	FSM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	170	-3039	-39	3039	multi-exon	FALSE	canonical	3	284	junction_4	22.6163657557973	1107	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTATGTGTATGAGTG	NA	False	NA	NA	False	NA	NA	NA	123798794	123809101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885
14315	chr6	-	1802	3	NNC	ENSMUSG00000030117.6	novel	2125	2	NA	NA	-114	-370	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	352	3252	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGCTTTAAAAATGTTCA	9866	False	NA	NA	False	NA	NA	NA	122587160	122582731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122582740_122582806_122584095_122586654
14316	chr17	+	4577	24	NNC	ENSMUSG00000035842.11	novel	4480	25	NA	NA	-1	31	intron_retention	FALSE	non_canonical	0	0	junction_18	52.6613103766514	3	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATCTACCTGAAGACATG	NA	False	NA	NA	False	NA	NA	NA	66430564	66458415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450542_66450644_66450768_66451172_66451286_66454662_66454733_66454986_66455091_66455648_66457048_66457325_66457405_66457568_66457724_66457797_66458290_66458332
14318	chr11	-	2791	8	ISM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	4319	11	3907	-4	intron_retention	FALSE	canonical	3	1798	junction_7	103.826385699142	1	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTACCCATTGTCACTGC	7686	False	NA	NA	False	NA	NA	NA	120459760	120451134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743
14319	chr10	-	4349	18	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	207	-3	intron_retention	FALSE	canonical	3	26	junction_7	86.8725351894499	1	99	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGCTTTGCTGATTGGT	NA	False	NA	NA	False	NA	NA	NA	61219102	61155437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61177132_61178097_61178281_61178572_61178937_61179406_61179513_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
14321	chr4	-	3202	21	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	188	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	136.854402559801	2	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACCTGACTTGTCTTTC	-13	True	NA	NA	False	NA	NA	NA	41124267	41114431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114570_41114883_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118415_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120080_41121877_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
14322	chr4	+	2407	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	191	2	2	-2	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	628	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTCATGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	130640626	130663450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
14324	chr2	-	5306	19	NNC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	90.656130242898	1	156	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84481087	84431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442373_84442437_84443265_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749_84480845_84480886
14325	chr6	-	3442	25	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.797263985984	7	81	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3469	False	NA	NA	False	NA	NA	NA	125168590	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145225_125148673_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
14326	chr1	-	2593	21	Antisense	novelGene_ENSMUSG00000025995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	35	23	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGAGCACCGGCCGGATTA	NA	False	NA	NA	False	NA	NA	NA	45862808	45834660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_45834765_45838175_45838300_45840313_45840385_45841196_45841285_45843031_45843159_45844533_45844610_45845838_45845951_45846828_45846913_45851246_45851359_45852202_45852268_45852352_45852466_45853700_45853876_45855635_45855794_45856420_45856602_45857327_45857423_45857979_45858078_45858648_45858817_45859288_45859349_45861605_45861753_45862040_45862131_45862463
14327	chr7	+	2887	11	Antisense	novelGene_ENSMUSG00000030726.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	4	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTCGGGTCACAGGTCGT	NA	False	NA	NA	False	NA	NA	NA	99731320	99770703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99733062_99737270_99737350_99738858_99738963_99742578_99742683_99745573_99745743_99748670_99748743_99749625_99749887_99755767_99755880_99761527_99761582_99768881_99768932_99770562
14329	chr7	-	1960	10	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-72	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	666.687666335927	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8793	False	NA	NA	False	NA	NA	NA	141941666	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930814_141930866_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
14330	chr7	-	2550	8	NIC	ENSMUSG00000030556.14	novel	2761	9	NA	NA	13	-7	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	27.7532862551299	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCCAGGTGTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	67269762	67163166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67269699
14331	chr6	-	3610	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	0	4	0	-4	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	140	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTCCCTTTGGCATTG	7881	False	NA	NA	False	NA	NA	NA	115830332	115817661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
14332	chr11	-	2154	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1520.48825465519	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGACTGAATTAAGTGAAA	9678	False	NA	NA	False	NA	NA	NA	106679296	106672381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106672690_106672804_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677874_106679098
14333	chr6	-	3492	10	NIC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	10	intron_retention	FALSE	canonical	3	5712	junction_9	757.172925761462	1	157	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGTATCCAAATTACTT	NA	False	NA	NA	False	NA	NA	NA	51446825	51438114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
14334	chr11	+	3989	5	NNC	ENSMUSG00000046311.14	novel	4029	5	NA	NA	-3	-24	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_4	48.5148173241949	155	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGTGACTTGTTTTAG	1377	False	NA	NA	False	NA	NA	NA	49094329	49109612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_49094366_49103521_49103604_49104416_49104470_49105049_49105146_49105890
14340	chr11	-	2173	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.815131191409	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239139	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191296_75192006_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
14342	chrX	-	3658	26	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	829	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	178.774288979148	1	100	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	59223620	59101315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59166287_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223532
14343	chr11	-	4669	2	ISM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	3716	18	264	-18	3prime_fragment	FALSE	canonical	3	358	junction_1	0	327	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGCCTTTTAAAGAGATC	9877	False	NA	NA	False	NA	NA	NA	120520710	120515960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120520563_120520643
14344	chr2	+	1592	4	Antisense	novelGene_ENSMUSG00000027597.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCTGTGGTGGTGACAAA	8221	False	NA	NA	False	NA	NA	NA	154901243	154905929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154902501_154904068_154904261_154905696_154905820_154905909
14345	chr17	+	2255	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	144	11	-32	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	4	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165716	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
14346	chrX	+	3443	10	NNC	ENSMUSG00000016409.5	novel	4230	9	NA	NA	14	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	133.605370632054	297	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGTTTCATATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	36390461	36414389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443_36413462_36414224
14348	chr4	-	2953	8	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	2282	0	527	0	3prime_fragment	FALSE	canonical	3	1168	junction_5	184.331002187226	1	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323253	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
14349	chr5	+	3382	1	ISM	ENSMUSG00000029313.19	ENSMUST00000054979.10	8323	20	97774	5	67577	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	35	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTTGAGCCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	103999801	104003183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_103999800_104003200
14351	chr16	+	4095	9	NNC	ENSMUSG00000022800.15	novel	4312	9	NA	NA	3	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	205.61641319457	1	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGGTATGAAGAGATTAA	NA	False	NA	NA	False	NA	NA	NA	32698179	32729211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722902_32726041
14352	chr3	+	2943	17	NNC	ENSMUSG00000027775.10	novel	3011	16	NA	NA	24	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	213.853036204189	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATTTGGAGGATAAATGA	NA	False	NA	NA	False	NA	NA	NA	67490097	67511566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67490237_67490276_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
14353	chr10	+	3105	15	Antisense	novelGene_ENSMUSG00000037012.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGATCCGCGACTCCACCT	NA	False	NA	NA	False	NA	NA	NA	62104891	62175934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62105836_62107367_62107604_62110227_62110386_62111461_62111643_62116810_62116856_62122235_62122430_62125936_62126172_62128091_62128247_62131479_62131665_62131773_62131875_62132454_62132551_62134927_62135046_62140496_62140648_62151164_62151328_62175791
14355	chr17	+	3334	11	NNC	ENSMUSG00000036636.11	novel	4237	25	NA	NA	-6233	-18	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	38.2027485922152	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAACAATCAAAATTTGTC	772	False	NA	NA	False	NA	NA	NA	25371395	25381054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25372129_25372718_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
14357	chr11	+	3512	6	Antisense	novelGene_ENSMUSG00000014606.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1338	57	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCAGCTGGAAGCTGGG	4434	False	NA	NA	False	NA	NA	NA	70533356	70537810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_70535920_70535999_70536103_70536180_70536446_70536608_70536816_70536898_70537060_70537597
14358	chr8	+	2526	12	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_7	313.356977010761	697	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACAAGCTCTGTGTTTC	2136	False	NA	NA	False	NA	NA	NA	13388783	13428440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421079_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
14359	chr14	+	2827	9	NNC	ENSMUSG00000040618.8	novel	2631	8	NA	NA	31	1	intron_retention	FALSE	non_canonical	0	0	junction_5	542.924358796877	18	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCAGTTGGAAGAATGGC	8922	False	NA	NA	False	NA	NA	NA	55777753	55787282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55781905_55782715_55782883_55785153_55785292_55785496_55785593_55785761
14360	chr8	+	829	2	FSM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	58	3126	-5	-3126	multi-exon	FALSE	canonical	3	209	junction_1	0	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACACAGGGGCTGCCCCT	NA	False	NA	NA	False	NA	NA	NA	13919698	13928513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13919812_13927797
14361	chr8	-	4533	6	NNC	ENSMUSG00000056204.9	novel	720	6	NA	NA	-30	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.6602895898522	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGCATCCAGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	71112348	71099086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71102470_71102777_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
14362	chr11	-	3961	3	ISM	ENSMUSG00000025140.16	ENSMUST00000141254.8	840	7	6	-1798	6	-10	intron_retention	FALSE	canonical	3	1022	junction_1	0	3	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAAAATCCCCCAG	NA	False	NA	NA	False	NA	NA	NA	120534463	120530251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120532132_120532254_120532348_120532475
14363	chr9	+	7169	14	FSM	ENSMUSG00000032384.17	ENSMUST00000034949.10	7208	14	39	0	5	0	multi-exon	FALSE	canonical	3	5	junction_1	6.58040843321514	157	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGTTTCATTAGCTG	NA	False	NA	NA	False	NA	NA	NA	65816306	65952297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65816451_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
14364	chrX	+	1981	10	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1184.97969977924	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCATTTTCTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100491485
14365	chr8	-	3596	6	NNC	ENSMUSG00000031601.17	novel	2982	6	NA	NA	-22	-6	intron_retention	FALSE	canonical	3	14	junction_1	200.565600240919	13	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTCCTATATGGTTG	NA	False	NA	NA	False	NA	NA	NA	40964367	40945593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947157_40948736_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055
14368	chr10	+	2814	11	NNC	ENSMUSG00000004207.15	novel	2654	14	NA	NA	7530	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	415.191233048098	1	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACAGATCTGGCCTTGT	1673	False	NA	NA	False	NA	NA	NA	60127812	60138370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60128353_60129128_60129255_60130312_60130511_60130744_60130926_60134860_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
14369	chr10	+	3593	24	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	10	-7	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	46.8391044035137	237	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGAACAGGGTTTATGCT	9125	False	NA	NA	False	NA	NA	NA	41352341	41363019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
14371	chr10	-	2840	12	NIC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	12	4107	intron_retention	FALSE	canonical	3	474	junction_11	67.1123395189177	4	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGAGTGCCAGCCCTCCGG	NA	False	NA	NA	False	NA	NA	NA	62438048	62420410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62420545_62421303_62421464_62423242_62423317_62423782_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
14372	chr1	-	4318	8	Antisense	novelGene_ENSMUSG00000026634.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTCCCGCGCCCCGCCG	NA	False	NA	NA	False	NA	NA	NA	190679152	190661049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_190661107_190665067_190665388_190669638_190669898_190671283_190671353_190673069_190674442_190675023_190675085_190675973_190676136_190677134
14373	chr10	-	2615	15	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	8	junction_10	146.905147796051	32	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417402	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
14374	chrX	+	951	3	ISM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	1278	12	-350	-12	3prime_fragment	FALSE	canonical	3	11014	junction_2	384.5	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAAAACCAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	36060581	36062448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_36060983_36061388_36061530_36062039
14375	chr8	+	3619	10	NNC	ENSMUSG00000055932.16	novel	3564	9	NA	NA	-9	-16	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	118.783650203029	309	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGATGAGAAGCCTAAGAGC	NA	False	NA	NA	False	NA	NA	NA	92040176	92395051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92228353_92228449_92249399_92249525_92392909
14376	chr7	-	2689	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	615	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	119320021	119314315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
14377	chr3	-	3586	23	FSM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	89	4	89	-4	multi-exon	FALSE	canonical	3	297	junction_17	44.2662166204014	514	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTTTGAGTCCTTGTC	NA	False	NA	NA	False	NA	NA	NA	101511911	101483538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762_101498032_101498436_101498555_101498655_101498791_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
14378	chr1	+	3414	9	Antisense	novelGene_ENSMUSG00000044783.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGCGTTTCCGGCCGCCG	5025	False	NA	NA	False	NA	NA	NA	88191656	88205303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_88194000_88194053_88194385_88195672_88195746_88197037_88197140_88197925_88198023_88201764_88201894_88202757_88202822_88204942_88205005_88205090
14379	chr3	+	2062	15	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	54	-5828	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	310.985464585844	6	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGTGTAACTGAGGCT	NA	False	NA	NA	False	NA	NA	NA	63883580	63924172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906128_63919001_63919094_63921674_63921806_63922845_63923019_63924053
14380	chr8	-	2820	18	NIC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	6	0	intron_retention	FALSE	canonical	3	18	junction_16	107.433764901126	6	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGTCTTGACCTCCTTC	1031	False	NA	NA	False	NA	NA	NA	3671296	3660086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668858_3669094_3671227
14381	chr19	+	3751	11	NNC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_5	100.597266364449	33	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTCAATCTTTTATACTG	NA	False	NA	NA	False	NA	NA	NA	10502631	10525011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509621_10509699_10510183_10510497_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
14382	chr11	-	3485	16	NNC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	-5	-707	intron_retention	FALSE	canonical	0	0	junction_7	28.0068245651345	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCACATTTGCTGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	115824308	115784127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115787601_115787702_115787879_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614
14383	chr16	-	3165	5	NNC	ENSMUSG00000022828.11	novel	3084	5	NA	NA	74	-8	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	117.992584512757	512	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTAAAGAGGTGGTTATA	NA	False	NA	NA	False	NA	NA	NA	37360064	37330159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37359838
14384	chr18	+	2739	18	NNC	ENSMUSG00000003779.17	novel	3146	19	NA	NA	118	0	intron_retention	FALSE	non_canonical	0	0	junction_13	398.263253862521	2	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGGATTCCAAATTTAGA	6811	False	NA	NA	False	NA	NA	NA	34758621	34765857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763351_34763480_34763581_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765359
14385	chrX	-	3140	16	FSM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	0	9	0	0	multi-exon	FALSE	canonical	3	263	junction_13	28.3953047762008	482	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTCTCTACTCTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	74918788	74829268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
14386	chr1	+	3328	6	ISM	ENSMUSG00000026142.16	ENSMUST00000140020.2	3687	7	1381	0	1381	0	3prime_fragment	FALSE	canonical	3	176	junction_3	13.1969693490589	3	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	1482	False	NA	NA	False	NA	NA	NA	82318150	82423087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
14387	chr7	-	1270	6	FSM	ENSMUSG00000061479.16	ENSMUST00000163311.9	1288	6	10	8	10	-8	multi-exon	FALSE	canonical	3	2141	junction_5	100.882902416614	756	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTTACCAGTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	26895175	26886439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868
14388	chr4	-	4346	7	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	-3	3	intron_retention	FALSE	canonical	3	119	junction_6	30.1482448355898	252	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTACTGTGGCCGTCTGT	1101	False	NA	NA	False	NA	NA	NA	129083422	129041794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083334
14389	chr16	+	2995	5	NIC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	4089	-14	intron_retention	FALSE	canonical	3	432	junction_2	64.3404033248161	10	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACACTAAATCTGGCTTGT	NA	False	NA	-58	True	NA	NA	NA	48108238	48114586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48108359_48109401_48109569_48109690_48111678_48113273_48113470_48114061
14390	chr13	+	3631	26	NNC	ENSMUSG00000021686.7	novel	4021	27	NA	NA	84	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	113.336003105809	2	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCTCTCCTAATCCTTA	NA	False	NA	NA	False	NA	NA	NA	94495551	94702824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_94495740_94527299_94527376_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554499_94576839_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
14391	chr2	-	3680	13	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-25	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	294.4434958056	9	67	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3988	False	NA	NA	False	NA	NA	NA	3513805	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492132_3492571_3492771_3495534_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
14392	chr3	-	2923	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	intron_retention	FALSE	canonical	1	178	junction_5	104.465230459708	28	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658943_95660318_95660443_95661630_95661828_95662069
14393	chr2	-	3875	30	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.182465607659627	1	111	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACGCCTAAATGCTACA	NA	False	NA	NA	False	NA	NA	NA	180997572	180961541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964687_180965154_180965239_180970347_180970471_180972585_180972671_180976711_180976770_180977684_180977835_180980844_180981038_180982292_180982387_180983315_180983371_180988621_180988698_180988803_180988886_180990965_180991368_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992966_180993045_180993158_180993365_180993491_180993593_180993751_180993839_180993971_180994542_180994638_180995762_180995967_180996143_180996235_180996801_180996923_180997123_180997345_180997441
14394	chr3	+	1924	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	41	12	4	-9	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTCATTTGAGACCGTTG	3845	False	NA	NA	False	NA	NA	NA	88204463	88229062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
14395	chr7	+	1939	1	FSM	ENSMUSG00000063902.14	ENSMUST00000051522.16	1378	1	-39	-522	-39	522	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTGGATTCACTAAAGA	NA	False	NA	NA	False	NA	NA	NA	83405072	83407011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83405100_83407000
14396	chr19	+	3023	21	NNC	ENSMUSG00000025001.12	novel	5868	22	NA	NA	42	-2771	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	557.156521993596	5	68	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCACATTATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	38919400	38956724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926917_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953855_38953928_38956176
14397	chr18	+	2527	20	NIC	ENSMUSG00000024271.9	novel	3466	22	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	2	11	junction_19	197.717782026908	59	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	NA	False	NA	NA	NA	24737019	24771869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24771450
14399	chr6	-	2498	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	-99	0	-99	0	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	120	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8791	False	NA	NA	False	NA	NA	NA	47790463	47773074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
14401	chr18	+	2664	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	14	6	14	-6	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	871	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCCCTTCCTGCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	50261281	50329330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
14403	chr9	+	3131	27	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-33	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	770.963371834265	3	99	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAAAGCTGTGGCTCC	NA	False	NA	NA	False	NA	NA	NA	72569686	72657124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577234_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650015_72656507
14404	chrX	-	1307	5	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCGAAGCTCTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	100492197	100487914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100487966_100488291_100488396_100488899_100488939_100489719_100489834_100491198
14405	chr13	+	2302	9	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	49	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGGAGTCTGCCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	100915260	100923007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916296_100916530_100916639_100917278_100917405_100917666_100917903_100918132_100918291_100919971_100920153_100921962_100922124_100922236_100922421_100922894
14406	chr17	-	2179	15	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	837.628920933174	2054	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	45906456	45896127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45902606_45902736_45903104_45903188_45904257_45904359_45906407
14407	chr4	-	3351	8	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	14	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	200.368232440745	2	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTTTTGTTTGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	126954931	126941375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126947768_126947923_126948000_126948176_126952585_126952823_126954788
14408	chr4	+	5318	17	FSM	ENSMUSG00000028718.17	ENSMUST00000030490.13	5285	17	-26	-7	-26	7	multi-exon	TRUE	canonical	3	47	junction_15	11.7923107892389	96	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTTCTCTTCACTGAAT	NA	False	NA	NA	False	NA	NA	NA	114857329	114900400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
14409	chr2	+	2323	10	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-34	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	399.431818684713	644	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTTGTGTGTTTATTTT	8629	False	NA	NA	False	NA	NA	NA	72306562	72317232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063_72316874_72316909
14410	chr6	-	3631	22	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-6844	0	intron_retention	FALSE	non_canonical	0	0	junction_1	255.83966953531	2	106	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	NA	False	NA	NA	False	NA	NA	NA	29589229	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541818_29543288_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560215_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565842_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575148_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027
14411	chr5	+	1997	13	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	362	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1244.46923927432	4	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACACTTGAAATGACTGA	NA	False	NA	NA	False	NA	NA	NA	129864423	129875210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129866932_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
14412	chrUn_JH584304v1	-	2853	6	Intergenic	novelGene_4660	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	26	junction_4	376.652306510925	2	58	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	59039	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55212_55293_55431_55511_55702_58563
14413	chr8	+	2384	15	Antisense	novelGene_ENSMUSG00000031591.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2532	23	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCACACCATGCACGGCA	NA	False	NA	NA	False	NA	NA	NA	41793678	41827724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799230_41799336_41799388_41799966_41800111_41801122_41801176_41802591_41802664_41804932_41805010_41807050_41807138_41807863_41807955_41813289_41813336_41820675_41820809_41827537
14414	chr3	-	1648	2	Genic_Genomic	ENSMUSG00000069008.4	novel	1252	1	NA	NA	-49	438	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTCTCACCTAAGGAATA	NA	False	NA	NA	False	NA	NA	NA	58011717	58009978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_58011318_58011408
14417	chr19	+	3035	5	NNC	ENSMUSG00000024772.10	novel	3353	5	NA	NA	26	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	186.126804893868	1	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAGCCTCTCATGCTCC	NA	False	NA	NA	False	NA	NA	NA	6326980	6350117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6327326_6331247_6331346_6344243_6344657_6347562_6347728_6348103
14418	chr2	+	1783	10	ISM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	1206	925	-382	-925	3prime_fragment	FALSE	canonical	3	1351	junction_5	104.04059036955	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCTTTGCCTCAGTTA	1850	False	NA	NA	False	NA	NA	NA	26280556	26286209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
14419	chr1	+	3302	7	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	1288	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.6936335231383	2	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATCAGTGTGTTGCTCG	1389	False	NA	NA	False	NA	NA	NA	82318057	82423082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82318401_82318514_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
14420	chr12	+	1861	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	-3	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1908.10962997413	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758236	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763687_24763967
14421	chr5	-	3815	17	NNC	ENSMUSG00000029228.16	novel	2208	11	NA	NA	25655	56979	intron_retention	TRUE	non_canonical	0	0	junction_1	0	262	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCGGCGTCTCTAGGTGG	NA	False	NA	NA	False	NA	NA	NA	74758527	74696128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74696422_74697460_74697503_74697598_74697640_74701589_74701650_74702668_74702773_74706071_74706136_74706711_74706819_74707349_74707491_74717704_74717808_74725176_74725286_74731757_74731859_74733092_74733248_74747665_74747717_74748803_74748861_74752433_74752652_74755731_74755869_74756495
14422	chr12	+	3128	9	NNC	ENSMUSG00000021282.18	novel	3547	12	NA	NA	170	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	781.24474998236	1	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTCTGTCTGCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	111506246	111513022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508710_111509126_111509276_111509533_111509699_111509960_111510096_111510962
14423	chr2	+	2837	5	FSM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	8	-5	8	5	multi-exon	FALSE	canonical	3	360	junction_1	65.1517459474418	1159	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTATTTATAGGGTGATT	NA	False	NA	NA	False	NA	NA	NA	144112827	144123152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913_144121047_144121400
14424	chr3	-	2900	8	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	3	-3	intron_retention	FALSE	canonical	3	357	junction_7	262.959374529719	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGGCTGTTGTGTATA	6157	False	NA	NA	False	NA	NA	NA	153618589	153612932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615799_153615897_153616004_153616327_153617670_153618570
14425	chr17	+	563	1	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	1402	5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATCAAAATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	34133934	34134497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34133900_34134500
14426	chr11	+	4346	21	NNC	ENSMUSG00000017119.21	novel	4392	23	NA	NA	0	-15	intron_retention	FALSE	non_canonical	0	0	junction_5	85.4325903856368	1	125	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACTGCAAGCCAACCAAG	987	False	NA	NA	False	NA	NA	NA	101443692	101472762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101455429_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101463999_101465824_101466243_101467128_101467236_101468757_101468864_101471410
14427	chr15	-	3484	11	Antisense	novelGene_ENSMUSG00000008690.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	74	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGATGGCTCAGCAGTTA	NA	False	NA	63	True	NA	NA	NA	89255769	89251208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_89253653_89253813_89253885_89254010_89254117_89254224_89254274_89254432_89254511_89254595_89254689_89254800_89254878_89254954_89255018_89255098_89255193_89255292_89255444_89255511
14428	chr16	+	3120	29	NNC	ENSMUSG00000038084.17	novel	6230	29	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	130.504085478312	2	46	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	29398187	29470697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407071_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430253_29430401_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
14429	chr2	+	3672	11	NIC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	23	-304	intron_retention	FALSE	canonical	3	416	junction_5	44.7755513645561	4	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTTTGTTGGATCCCA	NA	False	NA	NA	False	NA	NA	NA	25162512	25175623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25162690_25162926_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
14430	chr2	-	961	9	ISM	ENSMUSG00000025781.15	ENSMUST00000114896.8	1735	10	10716	43	10131	-43	3prime_fragment	FALSE	canonical	3	3857	junction_2	306.864281890219	2	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTGTAAATTATCTTACA	5954	False	NA	NA	False	NA	NA	NA	10074539	10060883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503
14431	chr8	-	1213	2	FSM	ENSMUSG00000037725.9	ENSMUST00000211629.2	987	2	62	-288	62	3	multi-exon	FALSE	canonical	3	274	junction_1	0	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACAAATGAGAGTTATTT	NA	False	NA	NA	False	NA	NA	NA	22660123	22658172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_22658991_22659728
14432	chr11	-	2006	11	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.2	109	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCGACACCCTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	80286968	80274147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274319_80276725_80276854_80278625_80278765_80279801_80279970_80280078_80280155_80280597_80280648_80282156_80282225_80282657_80282727_80285133_80285355_80285924_80286087_80286214
14433	chr16	+	6533	20	NNC	ENSMUSG00000022637.12	novel	3866	19	NA	NA	-12	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	21.0277484526078	109	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTGTATGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	51851956	52028410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_51852049_51852540_51852662_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52006709_52006844_52009375_52009517_52014521_52014642_52024795
14434	chr11	+	2305	4	ISM	ENSMUSG00000038335.14	ENSMUST00000153316.8	708	7	2506	-1026	1265	-2	3prime_fragment	FALSE	canonical	3	810	junction_2	33.95094500403	8	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74797301	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_74798278_74798649_74798791_74798871_74798947_74799053
14435	chr7	-	3889	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-5	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	139.242793549812	1	155	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAAATTGGAGCTTACG	NA	False	NA	NA	False	NA	NA	NA	42155155	42122827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123640_42123697_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139473_42139701_42155033
14436	chr4	-	5273	22	NNC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	-7343	-9	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	7.87947763499926	131	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAAAGCTACCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	63328934	63285370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822_63313872_63316111_63316477_63328903
14437	chr2	-	3823	8	FSM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	844	-1259	2	-167	multi-exon	FALSE	canonical	3	126	junction_2	23.9267589931935	474	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAACTTAGAAAACTAGTT	NA	False	NA	NA	False	NA	NA	NA	29677670	29664862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
14438	chr12	-	3186	4	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-20	2	intron_retention	FALSE	canonical	3	16	junction_3	24.5266295188629	77	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008995	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_76986865_76999942_77000051_77008036_77008064_77008763
14440	chr3	-	3428	27	FSM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	4	0	4	0	multi-exon	FALSE	canonical	3	562	junction_13	50.4098586206493	552	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	100069719	100045495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
14441	chr18	+	2710	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-4	-367	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	212.93944838307	1	56	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGCCAAGTGTGCTG	9046	False	NA	NA	False	NA	NA	NA	32970359	32999086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985031_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994181_32994661_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
14442	chr3	-	2527	23	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTGCACGACCATCGTG	NA	False	NA	NA	False	NA	NA	NA	151942463	151916126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916336_151919611_151919703_151921226_151921268_151923045_151923084_151923466_151923520_151923609_151923684_151923848_151923907_151925318_151925482_151925567_151925667_151925770_151925875_151926101_151926203_151926320_151926422_151926901_151927044_151927718_151927881_151928464_151928618_151928922_151929001_151931714_151931854_151933806_151933882_151937512_151937657_151939241_151939338_151940158_151940204_151941100_151941240_151942241
14443	chr8	+	4853	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-18	-1	combination_of_known_junctions	TRUE	canonical	3	89	junction_1	70.9023193477399	299	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTGGTGTCTCATTTCC	NA	False	NA	NA	False	NA	NA	NA	85763525	85784211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85763607_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
14444	chr3	-	3489	29	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	330.549650474133	1	113	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3509	False	NA	NA	False	NA	NA	NA	89959820	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933895_89933986_89935631_89935685_89938617_89938678_89941371_89941478_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
14445	chr10	+	3225	6	NIC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	-26	-22	intron_retention	FALSE	canonical	3	2953	junction_5	444.357963808459	18	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTACATTTTCACTCCTG	877	False	NA	NA	False	NA	NA	NA	127894853	127913119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127895156_127904540_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
14448	chr5	+	3160	13	NNC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	117	-5	intron_retention	FALSE	canonical	0	0	junction_6	26.0974402746493	2	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTATGGTGGTGCATTC	8260	False	NA	NA	False	NA	NA	NA	138170446	138178686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174328_138174381_138174471_138174537_138175035_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
14449	chr10	-	2764	21	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	29	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_16	427.815567739184	1	64	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCCCTCTCCTGGTCTAC	NA	False	NA	NA	False	NA	NA	NA	127147518	127132092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144811_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
14450	chr14	+	1985	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-18	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	573.390270554763	15	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271119	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293142_30294209_30294288_30295293
14451	chr7	-	3244	10	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	-8	-3	intron_retention	FALSE	canonical	3	348	junction_7	48.3574652400686	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCTGACTGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	125976601	125969241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
14452	chr1	-	2587	13	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	15	-5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	304.504333120054	1	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTATGCTTTGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	177624052	177590746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604191_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
14453	chr5	-	2658	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	16	-541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	4	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATACGGTAGCTTGACA	NA	False	NA	NA	False	NA	NA	NA	135963435	135937803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937811_135938113_135940506_135963176
14454	chr6	-	3630	13	FSM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	14	39	14	-20	multi-exon	FALSE	canonical	3	372	junction_9	201.860702108052	1	137	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTCCTCAGTAAAA	9610	False	NA	NA	False	NA	NA	NA	122313960	122294728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816
14455	chr4	+	2834	21	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	-9	-3	intron_retention	FALSE	canonical	3	40	junction_1	141.147538058586	610	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTCTAACTTGCCTCG	3994	False	NA	NA	False	NA	NA	NA	155709357	155734392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155709399_155709641_155709797_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
14456	chr3	-	2319	17	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	109.901358470903	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTATGATATTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	95763197	95737929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752360_95752479_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
14457	chr17	-	4433	14	FSM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	-24	-1154	-4	1154	multi-exon	FALSE	canonical	3	23	junction_13	48.4489605166915	173	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTACTTCTTTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	85397673	85369743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
14458	chr6	-	3103	19	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	3	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	278.733555679485	3	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGGGCTGACTGGTTT	7908	False	NA	NA	False	NA	NA	NA	124806395	124791994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798435_124799488_124799716_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
14459	chr1	+	2786	8	NNC	ENSMUSG00000026254.18	novel	3473	8	NA	NA	0	-636	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	1026.15450163437	3	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTTTTCAAGCTAGCTG	NA	False	NA	NA	False	NA	NA	NA	87141700	87167574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87164477_87164571_87165567
14460	chr7	+	2828	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	241	522	-35	130	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	34	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGTGAGTGAAACCATCA	NA	False	NA	NA	False	NA	NA	NA	12568928	12583982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
14462	chr6	-	2533	11	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-29	-3	at_least_one_novel_splicesite	FALSE	canonical	2	52	junction_7	681.261623754046	2299	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	8927	False	NA	NA	False	NA	NA	NA	47790327	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47780958_47781133_47783439_47783579_47783939_47784146_47785108_47785278_47790150
14463	chr12	+	1702	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	145	346	145	-346	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCACTTTTTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	24758384	24763799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
14464	chr7	-	5459	9	NNC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-26	-9	intron_retention	FALSE	non_canonical	0	0	junction_8	49.0688292095909	8	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTCCTGCCCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	140680511	140671098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140677134_140679167
14467	chr9	+	3104	12	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-34	0	intron_retention	FALSE	canonical	3	5755	junction_3	190.443675107444	3	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108765747	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
14468	chr3	-	3344	22	FSM	ENSMUSG00000028127.11	ENSMUST00000197662.5	2467	22	-35	-842	-4	-7	multi-exon	FALSE	canonical	0	0	junction_21	43.3354787537978	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTACAGAACATGTGCCTG	7232	False	NA	NA	False	NA	NA	NA	121608850	121552562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121608657
14469	chrX	+	3040	20	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	26	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	317.471738441615	1	88	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799449	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809669_150812205_150812392_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820487_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
14470	chr4	+	2040	9	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	951.647641921631	10	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	-8	True	NA	NA	False	NA	NA	NA	40722528	40733900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726156_40728124_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
14471	chr7	+	2791	27	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	52	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	460.928802470344	1	89	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2681	False	NA	-56	True	NA	NA	NA	13012812	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012890_13016404_13016469_13019182_13019253_13020563_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030156_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044928_13045027_13045120
14472	chr1	+	2815	4	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	5569	junction_3	263.409693570048	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862736	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863375_160863552_160863585_160863777_160865608_160865794
14473	chr1	+	3976	10	NNC	ENSMUSG00000026039.10	novel	4939	9	NA	NA	59	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.603395567727	4	49	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGATTTATTTATCTATC	5198	False	NA	NA	False	NA	NA	NA	58035188	58065048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58035476_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517_58054657_58055554_58057143_58058747_58058902_58063942
14475	chrX	-	3057	21	NNC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	-341	-48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	469.395771178224	1	84	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGTGATTCTTATACATC	7814	False	NA	NA	False	NA	NA	NA	37653880	37622198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37622606_37625998_37626152_37627830_37628006_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638094_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650481_37650602_37652539_37653086_37653809
14476	chr11	-	3643	7	FSM	ENSMUSG00000017615.13	ENSMUST00000108277.3	3768	7	70	55	9	-55	multi-exon	FALSE	canonical	3	137	junction_6	14.2789666604026	278	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTTTCCAGTGAGCAG	NA	False	NA	NA	False	NA	NA	NA	78427088	78413730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426911
14478	chr6	+	3009	11	NNC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	317.430323063188	525	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAGTGTATGGAAGCGT	NA	False	NA	NA	False	NA	NA	NA	113023314	113045228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113024153_113024375_113024666_113026299_113026378_113027717_113027898_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
14479	chr16	-	4167	21	NNC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	38	-8	intron_retention	FALSE	non_canonical	0	0	junction_4	50.7729012367818	34	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATAGTTTTGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	10994167	10954463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963505_10963644_10964230_10964310_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
14480	chr16	-	2674	14	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-18	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	324.769303647552	12	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8092	False	NA	NA	False	NA	NA	NA	4867745	4831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833208_4837235_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
14481	chr4	+	2739	12	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	4	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	61.0470621869136	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603905	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
14482	chr5	-	3127	10	NNC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	273	0	intron_retention	FALSE	canonical	0	0	junction_1	310.073826334597	2	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	114020219	113980496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982409_113983317_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018
14483	chr2	-	4895	26	NNC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	153.920415799854	1	162	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	482	False	NA	NA	False	NA	NA	NA	119618000	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600189_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602520_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605531_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617915
14485	chr8	+	2588	17	NNC	ENSMUSG00000031864.17	novel	4201	17	NA	NA	-4	146	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	168.861999869716	159	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTTAAAAAAAAACTTATT	NA	False	NA	NA	False	NA	NA	NA	69246603	69280299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250724_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
14486	chr7	+	2508	3	NIC	ENSMUSG00000006333.15	novel	1347	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	206	junction_2	4125.5	24	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1311	False	NA	NA	False	NA	NA	NA	3707038	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3708919_3709006
14488	chr4	-	2131	12	Genic_Genomic	ENSMUSG00000084968.2	novel	3700	4	NA	NA	5019	-4731	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGGCTTCCTGGTAAAAC	NA	False	NA	NA	False	NA	NA	NA	108472027	108454352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_108454669_108456512_108456620_108457123_108457279_108459150_108459256_108460595_108460690_108461166_108461332_108461694_108461803_108462722_108462872_108463430_108463553_108469245_108469418_108470265_108470352_108471475
14489	chr7	-	3742	13	FSM	ENSMUSG00000044702.14	ENSMUST00000098068.10	3750	13	8	0	8	0	multi-exon	FALSE	canonical	3	74	junction_9	28.0835806121655	192	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	NA	False	NA	NA	NA	121732161	121706484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
14490	chr9	-	4384	2	NIC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	14	15	intron_retention	FALSE	canonical	3	1351	junction_1	0	26	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGTACTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	50515098	50507641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50511965_50515037
14491	chr17	-	3338	5	NIC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	43	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	24.4169510791171	1	100	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTTTGTATTTTAC	NA	False	NA	NA	False	NA	NA	NA	22533775	22504851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_22507883_22508749_22508877_22511388_22511437_22532217_22532302_22533727
14492	chr9	+	2490	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	30	-316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	273.680396052902	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACCTGTGCCTGCTCC	5542	False	NA	NA	False	NA	NA	NA	35122480	35127994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
14493	chr6	-	3154	6	NNC	ENSMUSG00000045896.15	novel	3982	5	NA	NA	3	-675	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.582273509043	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGTGAACTACTAAATG	NA	False	NA	NA	False	NA	NA	NA	83808679	83783057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83785637_83785745_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
14494	chr10	-	2995	10	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-7	112	intron_retention	FALSE	non_canonical	0	0	junction_5	651.284277314095	1	106	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	NA	False	NA	NA	NA	127358240	127353489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354440_127354660_127354827_127354989_127355125_127355253_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786
14495	chr11	-	1854	12	Antisense	novelGene_ENSMUSG00000007739.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCGGGTGTGACGTCAGG	7748	False	NA	NA	False	NA	NA	NA	22953337	22940592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22940917_22945925_22946037_22946312_22946456_22947030_22947154_22947601_22947736_22949032_22949175_22950857_22950953_22951359_22951468_22951554_22951694_22952178_22952400_22952814_22952928_22953136
14496	chr6	+	3427	16	NNC	ENSMUSG00000029920.10	novel	4179	22	NA	NA	6457	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	109.348372949334	1	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAGTTGTATTTCACAC	NA	False	NA	NA	False	NA	NA	NA	65060788	65093028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284_65091958_65092011
14497	chr7	+	2408	10	Intergenic	novelGene_3045	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	169	9	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTCCTCCTCTTCCTCC	NA	False	NA	NA	False	NA	NA	NA	133287891	133312174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_133288846_133291310_133291409_133292235_133292320_133292810_133292898_133299398_133299477_133300876_133300948_133302542_133302640_133303567_133303651_133304057_133304203_133311463
14498	chr5	+	3880	15	NIC	ENSMUSG00000029106.15	novel	3898	16	NA	NA	-28	2	combination_of_known_junctions	FALSE	canonical	3	16	junction_10	135.779157427923	297	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTAAGGTTGGGG	NA	False	NA	NA	False	NA	NA	NA	34731178	34789640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774252_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
14499	chr7	-	3842	22	NNC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	-7	-31	intron_retention	FALSE	non_canonical	0	0	junction_5	325.740934582353	1	88	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAATAAAAAAATAA	7017	False	NA	NA	False	NA	NA	NA	126101497	126090917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093463_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096668_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
14500	chr19	-	973	6	NIC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-49	-4121	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	329.771799885921	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTCCAGAGACGTAG	8388	False	NA	NA	False	NA	NA	NA	43512973	43492874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_43493127_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
14502	chrX	+	4782	9	NNC	ENSMUSG00000031201.18	novel	2473	10	NA	NA	-4	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	482.141819774016	1167	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTAAATCTTTATGACTT	NA	False	NA	NA	False	NA	NA	NA	74460298	74497604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74460448_74461997_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574
14503	chr1	-	2623	22	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAACCATGGTGATGGGA	4809	False	NA	NA	False	NA	NA	NA	87645853	87609247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87609290_87609406_87609479_87611462_87611588_87619346_87619449_87623049_87623157_87625069_87625266_87625831_87625952_87626748_87626847_87627360_87627497_87628282_87628467_87628879_87628990_87629135_87629225_87630838_87630921_87633654_87633745_87635816_87635931_87637337_87637421_87638784_87638870_87639748_87639898_87640907_87641010_87642757_87642814_87642996_87643034_87645409
14504	chr2	-	4637	4	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-3	2343	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	77.271527025735	86	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	156681815	156672625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156676959_156679742_156679834_156680337_156680454_156681718
14506	chr1	+	2301	15	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-26	-258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	562.183988330061	6	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATATAGATTTTCTTT	3116	False	NA	NA	False	NA	NA	NA	180396462	180428559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408135_180418838_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
14508	chr1	-	3265	4	NIC	ENSMUSG00000003051.14	novel	2095	9	NA	NA	-19	-362	intron_retention	FALSE	canonical	3	502	junction_2	68.2951112615114	3	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGACTGTGGCAGGAGAC	NA	False	NA	NA	False	NA	NA	NA	135186195	135181678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135182119_135182662_135183830_135183971_135185521_135186086
14510	chr10	+	2428	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	279.805570038899	1	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873326_21873796_21873953_21874058_21874149_21874558
14511	chr4	+	2861	16	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	-6	-182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	222.329625156483	5	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACTTCTGTCCATCTGT	9104	False	NA	NA	False	NA	NA	NA	152018181	152066412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058738_152061447_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
14512	chr5	-	2737	19	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	247.41777534275	12	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTGTGTGCTGTATGTC	8289	False	NA	NA	False	NA	NA	NA	137305904	137293974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298085_137298536_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
14513	chrX	-	2397	14	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	10	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	255.18003854339	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTGAGATGAGGGATG	NA	False	NA	NA	False	NA	NA	NA	95000509	94978927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984164_94984299_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
14514	chr7	+	2144	9	FSM	ENSMUSG00000066979.7	ENSMUST00000207736.2	2128	9	-23	7	-23	-4	multi-exon	FALSE	canonical	3	44	junction_4	579.695609781547	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTTCCAGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	131162085	131173617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131164092_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
14515	chr5	-	2327	13	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	777	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	426.494260414682	1	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAATAAAAGAGGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	24781688	24770371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773304_24773609_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516
14516	chr2	-	1692	7	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	8882	380	8832	-380	3prime_fragment	FALSE	canonical	0	0	junction_6	423.986110883626	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCATGTATGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	154907535	154901609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456
14518	chr8	+	4304	22	NNC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	7	-710	intron_retention	FALSE	canonical	1	1	junction_9	72.3812030070849	37	100	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTACTGAGACTCAGG	NA	False	NA	NA	False	NA	NA	NA	85809905	85824201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85810118_85811269_85811444_85811983_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818245_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
14522	chr1	-	2401	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	26	5775	-10	1	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTTAATACTTCCTA	NA	False	NA	NA	False	NA	NA	NA	86287096	86278215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
14524	chr8	-	2483	11	NIC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	-20	-1	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	245.924866575139	1033	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGTTGGTCAAATGA	NA	False	NA	NA	False	NA	NA	NA	110419912	110397957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110399274_110402007_110402057_110402274_110402435_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
14526	chr18	-	4838	17	NIC	ENSMUSG00000057440.9	novel	4981	17	NA	NA	-11	-153	combination_of_known_junctions	FALSE	canonical	3	86	junction_16	10.4634781502137	62	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATATATCTGCTTGAAAG	-33	True	NA	NA	False	NA	NA	NA	7626877	7348116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626728
14528	chr6	-	2049	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	150	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.44491542262	3	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8635	False	NA	NA	False	NA	NA	NA	145021760	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945518_144945871_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
14529	chr1	-	1672	12	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	2389	5777	1958	0	3prime_fragment	FALSE	canonical	3	5903	junction_8	870.888621888894	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-40	True	NA	NA	NA	86284733	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
14530	chr6	+	2366	10	NIC	ENSMUSG00000013736.17	novel	2283	9	NA	NA	20	-7	intron_retention	FALSE	canonical	3	16	junction_3	364.812585065568	1081	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCATTCTTTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	106746150	106759428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_106746218_106746790_106746965_106747762_106747877_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
14532	chr3	-	4567	14	NNC	ENSMUSG00000028096.14	novel	4598	14	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_4	41.9186306745955	383	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCTGAGCAATTACACG	1897	False	NA	NA	False	NA	NA	NA	96812628	96775597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787385_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
14534	chrX	-	3479	11	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	141.867156170835	2216	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTCCATTATGCCTG	NA	False	NA	NA	False	NA	NA	NA	156275042	156226847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243411_156244169_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
14535	chr12	-	1385	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	40	1329	0	891	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	9	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAACTGAGATACAAATC	NA	False	NA	NA	False	NA	NA	NA	30961548	30944983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
14536	chr5	-	3579	5	NNC	ENSMUSG00000109771.2	novel	3523	4	NA	NA	-6335	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	27.0404789158772	1	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGTTCCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	110235089	110224000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110227247_110228349_110228411_110228603_110228731_110234790_110234879_110235032
14538	chr11	-	2842	17	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-21	-846	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	117.899056399956	7	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGGTATTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	79853237	79825624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79839768_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
14539	chr3	+	2877	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	148.278928147409	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	54600304	54636184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600390_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629974_54630062_54633390_54633497_54634989_54635118_54635764
14540	chr7	+	3038	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	-30	0	1	0	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	3	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79944222	79966002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
14541	chr1	+	2882	16	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	6	junction_15	138.419876543155	265	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9766	False	NA	NA	False	NA	NA	NA	175708359	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175734171_175734227_175735995
14542	chr17	+	2817	6	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	17	0	intron_retention	FALSE	canonical	3	546	junction_3	75.6819661478215	647	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5639	False	NA	NA	False	NA	NA	NA	34128488	34134564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34128573_34129404_34129646_34130211_34131782_34132246_34132701_34132816_34133037_34134316
14543	chr15	-	3420	3	NIC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-5	-76	intron_retention	FALSE	canonical	3	2313	junction_2	18.5	1	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCACGAGTTACAATTTG	NA	False	NA	NA	False	NA	NA	NA	38300955	38294735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_38297772_38297865_38298097_38300802
14544	chr11	+	1473	2	FSM	ENSMUSG00000034773.17	ENSMUST00000140040.2	890	2	-590	7	-590	-7	multi-exon	FALSE	canonical	3	345	junction_1	0	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCAGCCTCCGTCCCAC	5838	False	NA	NA	False	NA	NA	NA	102152199	102156006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102153127_102155460
14545	chr5	-	2499	17	ISM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	9799	1119	4180	3	3prime_fragment	FALSE	canonical	3	340	junction_11	40.6199996922698	334	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCCTGTTTTCTTCTGTC	4890	False	NA	NA	False	NA	NA	NA	30350361	30324420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232
14547	chr5	-	2949	20	NNC	ENSMUSG00000037364.13	novel	2988	20	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	243.221124155483	8	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTTAACTGTGTGCTG	8243	False	NA	NA	False	NA	NA	NA	137305950	137293980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298361_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
14549	chr6	-	2691	21	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	1626	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	198.054859824242	1	44	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	5232	False	NA	NA	False	NA	NA	NA	125166827	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148841_125149992_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151217_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725
14550	chr7	-	4408	13	NNC	ENSMUSG00000035547.15	novel	4498	13	NA	NA	53	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	46.0639651885168	263	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGAGGGATCTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	97827428	97770775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_97773263_97774448_97774586_97775035_97775125_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97827250
14551	chr11	-	3467	10	FSM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	28	5	-13	-5	multi-exon	FALSE	canonical	3	176	junction_1	174.428237039028	433	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTTCCCTCCCCTTTG	1042	False	NA	NA	False	NA	NA	NA	120881890	120852579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
14552	chr9	-	3237	19	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6359	37231	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	5016	False	NA	NA	False	NA	NA	NA	21316657	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299818_21300049_21303589_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307504_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21314431_21314798_21315355_21315486_21315989
14553	chr1	-	1335	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	203	560	54	-560	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGATGAGTTCTGCAA	7499	False	NA	NA	False	NA	NA	NA	160040242	160030496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
14556	chr4	-	2843	9	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	518	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	527.600405136311	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323262	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304381_141304499_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
14557	chr6	+	2290	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	-2	1345	-2	572	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	2322	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGCTTTTGCTGTACTG	535	False	NA	NA	False	NA	NA	NA	88061461	88080941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
14562	chr14	-	2106	10	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	1	22	junction_9	1330.77229967423	13	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63741274_63741824_63746158
14563	chr2	-	3556	15	NNC	ENSMUSG00000027086.17	novel	2865	14	NA	NA	128	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	75.3197605315538	94	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAATGACTATGGCC	7201	False	NA	NA	False	NA	NA	NA	69543714	69517167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470_69543592_69543655
14564	chr9	+	2939	6	NIC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	58	-9	intron_retention	FALSE	canonical	3	1453	junction_3	104.080737891312	5	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTGACTCTGCTCTGAT	NA	False	NA	NA	False	NA	NA	NA	65537898	65567799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65538180_65556630_65556709_65557248_65557907_65558214_65558987_65566416_65566487_65566719
14565	chr11	+	5068	20	NIC	ENSMUSG00000036644.16	novel	5213	22	NA	NA	31	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_18	31.7647167454221	155	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTTTGTTTAAAGTACA	NA	False	NA	NA	False	NA	NA	NA	50022259	50063612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50059522_50059630_50061523
14566	chr1	+	1697	2	Genic_Genomic	ENSMUSG00000101188.2	novel	1218	1	NA	NA	-14	556	multi-exon	TRUE	non_canonical	0	0	junction_1	0	26	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	60743076	60744864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_60744285_60744375
14569	chr13	-	4503	4	FSM	ENSMUSG00000048280.19	ENSMUST00000175821.8	652	4	-24	-3827	11	3827	multi-exon	FALSE	canonical	3	10	junction_1	5.09901951359278	40	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGTTATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	67831659	67815558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67819731_67821116_67821213_67821680_67821808_67831551
14570	chr6	-	2151	5	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	977.86885623789	16	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTTGTCTCATGACTT	NA	False	NA	NA	False	NA	NA	NA	148847937	148822559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824262_148830079_148830134_148832048_148832149_148834499_148834647_148847789
14572	chr2	+	4654	11	FSM	ENSMUSG00000002103.17	ENSMUST00000002172.14	4656	11	-8	10	-8	-9	multi-exon	FALSE	canonical	3	45	junction_7	11.5134703716994	114	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACCACCACCTGGTAAAG	5049	False	NA	NA	False	NA	NA	NA	91033245	91044433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91036623_91037061_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
14574	chr4	-	2068	5	NIC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	intron_retention	FALSE	canonical	3	1694	junction_1	145.419006666942	97	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41095272_41098001
14576	chr9	-	1400	15	ISM	ENSMUSG00000032580.13	ENSMUST00000035199.13	3064	25	4	9989	-2	11	5prime_fragment	FALSE	canonical	3	262	junction_9	126.67363255103	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTCCAACCCACCTGGC	9718	False	NA	NA	False	NA	NA	NA	107648182	107627687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
14579	chr16	-	4801	14	NNC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	0	-1834	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	15.7949134198586	2	91	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATGGTTCTAAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	3821616	3798830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3798859_3799448_3799552_3802854_3805041_3805778_3805946_3806836_3806959_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821595
14580	chr5	+	1915	11	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	13	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1308.27658008542	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTATAACAATATATTCT	299	False	NA	NA	False	NA	NA	NA	77099166	77115340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114796_77114970
14581	chr13	+	2914	5	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	50	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	69.2003432072414	17	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAATATGTGGAATATTGC	NA	False	NA	NA	False	NA	NA	NA	97619258	97633501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97629663_97630239_97630912_97631921_97632118_97632976_97633054
14582	chr14	-	3157	15	NNC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	-13	-365	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	138.151425351064	2	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGTAGAAATACATTAAT	NA	False	NA	NA	False	NA	NA	NA	67953072	67914168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67915405_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
14583	chr7	-	3310	7	FSM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	-30	4	20	-4	multi-exon	FALSE	canonical	3	356	junction_6	93.763295353542	673	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTTTTTTTGTTGTTGTT	5428	False	NA	NA	False	NA	NA	NA	126795202	126790835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
14585	chr7	-	3594	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	1	74669	intron_retention	FALSE	non_canonical	0	0	junction_1	153.307334752415	2	109	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATGTTCCATGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	42155163	42048140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42048406_42048513_42048565_42123692_42126108_42126528_42126639_42137893_42137975_42138858_42139463_42155095
14586	chr17	+	3645	11	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-33	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	52.9377936827745	1	95	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTTCAATAAAAAAGTTG	9357	False	NA	NA	False	NA	NA	NA	36152534	36170533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161406_36162004_36162049_36163306_36163853_36169832
14587	chr9	+	2756	10	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-3	1	intron_retention	FALSE	canonical	3	1280	junction_9	465.93469049049	3	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGTGACAACTGAT	1145	False	NA	NA	False	NA	NA	NA	108437634	108442764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
14588	chr9	-	831	1	FSM	ENSMUSG00000058922.8	ENSMUST00000168019.2	960	1	-79	208	-79	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAATTTTGGAGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	123519336	123518505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_123518500_123519300
14589	chr10	-	1694	11	FSM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	12	-1	-1	1	multi-exon	FALSE	canonical	3	269	junction_5	22.702422778197	831	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGTTTAATGTTTAT	NA	False	NA	NA	False	NA	NA	NA	89568145	89547831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
14590	chr7	+	2232	7	NNC	ENSMUSG00000045411.17	novel	3336	5	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	305.815167489558	49	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	43896291	43901736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896472_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
14591	chr11	+	2953	10	NIC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	-19	-40	intron_retention	FALSE	canonical	3	2673	junction_3	116.47614072429	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	107370334	107388959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107385631_107386513_107386592_107388349
14592	chr2	+	3518	18	NNC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	-11505	-37	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	169.083955723318	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAAAATGCCATTGTCC	6207	False	NA	NA	False	NA	NA	NA	153020813	153052349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030970_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526_153051645_153051683
14594	chr10	-	3499	9	NIC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	0	-10	intron_retention	FALSE	canonical	3	316	junction_2	45.549423706563	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTAAGTCATTCACAGAAG	NA	False	NA	NA	False	NA	NA	NA	127047454	127032945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127035014_127035181_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
14595	chr11	+	2491	12	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	15988	-3962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2104.20385996641	5	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACTTCATCTGGCAA	NA	False	NA	NA	False	NA	NA	NA	55376531	55391702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55386995_55387047_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
14596	chr15	-	2752	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	1	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2369.88648016923	2	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCCTTAAACAGTAGATG	378	False	NA	NA	False	NA	NA	NA	36609216	36595919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36595991_36596029_36596344_36596806_36596900_36597207_36597339_36597705_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603094_36603230_36605685_36605802_36605987_36606182_36608557
14597	chr6	-	2839	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	-6	243	-6	139	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGCCCAACCCCTGATG	7899	False	NA	NA	False	NA	NA	NA	124806404	124792243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
14598	chr15	-	4529	16	NNC	ENSMUSG00000022462.8	novel	4660	16	NA	NA	131	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	84.5858932289146	1	115	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCCTCAGTAGGATTTTT	84	False	NA	27	True	NA	NA	NA	96597480	96585275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592979_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495_96596699_96597288
14599	chr14	+	2499	9	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	25	intron_retention	FALSE	canonical	2	18	junction_4	542.473501656993	1	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAGATGCACACTTTTA	9014	False	NA	NA	False	NA	NA	NA	55777845	55786354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55782051_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
14601	chr2	+	3062	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	2	-14	intron_retention	FALSE	canonical	0	0	junction_1	192.360836341561	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGGGCAAAGTGTTCT	636	False	NA	NA	False	NA	NA	NA	31462805	31507516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462864_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
14602	chr2	-	4576	33	Antisense	novelGene_ENSMUSG00000057738.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	45	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGAGGCTGACTGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	29921405	29890014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29890075_29892242_29892440_29893324_29893461_29894515_29894551_29896632_29896681_29897503_29897595_29897848_29897998_29898083_29898267_29900709_29900808_29900918_29901118_29901195_29901343_29903455_29903561_29903683_29903851_29905604_29905730_29905942_29906079_29907200_29907313_29908371_29908583_29909938_29910055_29910432_29910561_29911201_29911328_29912443_29912549_29914911_29915073_29915532_29915608_29916019_29916231_29916530_29916836_29917034_29917142_29917640_29917660_29919630_29919687_29920011_29920207_29920326_29920383_29920463_29920609_29920684_29920828_29920976
14603	chr12	+	3628	21	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-8	410	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_2	165.091270211359	2	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTGGCATATTCATTT	4012	False	NA	NA	False	NA	NA	NA	83679056	83729204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
14604	chr17	-	2478	6	NNC	ENSMUSG00000024327.17	novel	2433	6	NA	NA	-11	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	249.617787827711	1092	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGCAGCCTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	34250667	34247247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248682_34248819_34248958_34249063_34249229_34249341_34249396_34249539
14605	chr1	-	2194	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	744	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2125.48113997487	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	-108	True	NA	NA	NA	86285947	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279178_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828
14606	chr4	-	2435	4	ISM	ENSMUSG00000028568.17	ENSMUST00000102739.2	723	6	5785	-2071	34	-466	3prime_fragment	FALSE	canonical	3	1008	junction_1	64.4411876571705	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTTGCATTTTGATCAC	NA	False	NA	NA	False	NA	NA	NA	108683343	108671957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296
14607	chr7	-	2599	18	NIC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	18	-12	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	585.006840524286	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCATCTGCCTCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	33867982	33840124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33840892_33841227_33841278_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
14608	chr4	-	4436	27	NNC	ENSMUSG00000040964.17	novel	4382	27	NA	NA	8694	-4	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_26	42.3527033291848	174	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCCCTGTGGGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	140367367	140241799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140367186
14610	chr8	-	3288	10	FSM	ENSMUSG00000040010.11	ENSMUST00000045557.10	3517	10	229	0	229	0	multi-exon	FALSE	canonical	3	2143	junction_1	128.439734631066	907	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGACTGTGTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	122634204	122607888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613596_122613721_122614235_122614281_122615060_122615167_122623166_122623305_122633804
14611	chr7	+	3310	6	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	30	junction_1	315.020253317148	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43896233_43896674_43896841_43897675_43899024_43899444_43899484_43899732_43899765_43900036
14612	chr10	-	2762	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1154.93838718812	1	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATACTCAGTGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	86541326	86526709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526978_86527485_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539464_86540157_86540261_86541170
14614	chr11	+	2316	12	ISM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	2438	1	-25	-1	3prime_fragment	FALSE	canonical	3	581	junction_5	45.6110034571005	1968	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAGTATCTGATTTGTTG	6576	False	NA	NA	False	NA	NA	NA	102323585	102327632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
14615	chr2	-	3638	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	155	322	-14	-322	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	73	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAATAAGGTTCAAAATGT	NA	False	NA	NA	False	NA	NA	NA	39116308	39084687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
14616	chr5	-	2613	11	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	525.956927894291	2	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTATCTTGTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	92231578	92201581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212387_92213642_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
14617	chr3	+	1841	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	691.544468186457	3	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3859	False	NA	NA	False	NA	NA	NA	88204477	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220629_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
14618	chr5	-	3460	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	31	0	-22	0	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	919	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	114046788	113980496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
14619	chr18	+	2730	7	NNC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	-23	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	174.620302370601	4	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTACTTGTGTGTCTTAAT	NA	False	NA	NA	False	NA	NA	NA	21135024	21161276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157507_21159240
14620	chr15	+	2517	13	NNC	ENSMUSG00000022471.15	novel	3296	13	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	191.42468420301	1385	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGCACTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	81900661	81924284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81901135_81901271_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
14621	chrUn_JH584304v1	+	5271	26	Intergenic	novelGene_4584	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_21	16.373344191093	148	62	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAGTCTCCTACTTTTC	NA	False	NA	NA	False	NA	NA	NA	4975	52726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_5089_6915_7011_14083_14202_19242_19346_20219_20377_24796_24959_26983_27055_28052_29520_31432_31500_38114_38246_39081_39164_39432_39612_40110_40187_41049_41127_41974_42078_44213_44311_47516_47678_47923_47999_48581_48657_48768_48946_49051_49984_50092_50277_51408_51545_51650_51730_52288_52401_52484
14622	chr9	-	3157	24	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-6	-4	intron_retention	FALSE	canonical	3	262	junction_18	113.530672554099	695	6	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGGTTTCCTGTGTC	9699	False	NA	NA	False	NA	NA	NA	107648201	107617702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107618292_107619590_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
14624	chr3	-	4393	15	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-2	2	intron_retention	FALSE	canonical	1	178	junction_5	105.389196092679	2	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662176	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95660443_95661630_95661828_95662069
14626	chr6	-	2107	14	FSM	ENSMUSG00000029782.21	ENSMUST00000102991.9	1718	14	-3	-386	0	0	multi-exon	FALSE	canonical	1	3	junction_5	263.056724370784	5	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	2	True	NA	NA	False	NA	NA	NA	30509717	30482413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
14627	chr9	+	4130	19	NNC	ENSMUSG00000025898.7	novel	4446	18	NA	NA	-22	68	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_9	81.3321379693579	234	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTATATCCTGCTCACT	-13	True	NA	NA	False	NA	NA	NA	3404065	3479304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3440578_3440669_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
14629	chr12	+	1877	6	NNC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	-676	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	82.0551034366541	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	84377873	84390497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84378537_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
14630	chr1	-	1219	4	NNC	ENSMUSG00000026245.17	novel	1801	17	NA	NA	30192	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	631.432410388387	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	78435240	78401721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431872_78434919
14631	chr13	-	3412	13	NNC	ENSMUSG00000032745.19	novel	3694	13	NA	NA	174	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	496.837240004768	1	95	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTGTTGTTCTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	111626388	111562215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584482_111585462_111585534_111589557_111589783_111589906_111590031_111603384_111603505_111623956_111624905_111626271
14632	chrX	-	2838	24	Intergenic	novelGene_4072	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCACAAACGCTCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	143152686	143101057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101116_143102892_143103054_143105003_143105152_143119334_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256_143134373_143134768_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147107_143152523
14633	chr4	-	2120	14	FSM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	1	-3	1	3	multi-exon	FALSE	canonical	3	48	junction_9	345.747385294336	532	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGTTCTGGAATTATA	NA	False	NA	NA	False	NA	NA	NA	116484693	116458245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
14634	chr7	-	3138	3	Antisense	novelGene_ENSMUSG00000077575.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	164	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGGAGCTCACGAAGTCT	NA	False	NA	NA	False	NA	NA	NA	109122171	109118405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109118429_109118787_109118854_109119122
14636	chr17	+	3153	13	NNC	ENSMUSG00000069135.12	novel	3505	13	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	133.48790519494	459	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCATTTTACAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	8384349	8415302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8406899_8406959_8410229_8410270_8411016_8411114_8413352
14638	chr10	+	2505	15	NNC	ENSMUSG00000001785.14	novel	2572	15	NA	NA	-22	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	81.5408999665011	17	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTCACTTTGACTTCA	NA	False	NA	NA	False	NA	NA	NA	85707725	85724963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712239_85712379_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
14640	chr9	+	3189	11	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	142	0	intron_retention	FALSE	canonical	3	1100	junction_8	80.0200599849813	4	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	59446964	59472392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59470334_59470506_59471271_59472103
14641	chr5	+	2025	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1122.04163804201	1	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	739	False	NA	NA	False	NA	NA	NA	77099606	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110277_77110358_77112288_77112470_77114093_77114253_77114494
14642	chr9	-	3877	22	NNC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	137.404380275233	1	115	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTTAAAGTTTTTTTT	7601	False	NA	NA	False	NA	NA	NA	107749932	107650758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669220_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730740_107737547_107737659_107738821_107738929_107749847
14643	chr2	-	2514	17	NIC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	114.982539435342	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAGTGCCCAGTAAACA	NA	False	NA	NA	False	NA	NA	NA	126975847	126945746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126968034_126968128_126969023_126969115_126969404_126969643_126975768
14645	chr8	+	3618	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	29	-73	29	73	multi-exon	TRUE	canonical	3	316	junction_5	36.370219952707	915	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAATGGGAAACAAGT	NA	False	NA	NA	False	NA	NA	NA	22682853	22710932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
14646	chr9	+	2236	22	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	117.959022824707	2	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCTCTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	108385257	108393136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391823_108392305_108392432_108392994
14649	chr12	+	3621	8	NIC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	10	-146	intron_retention	FALSE	canonical	3	465	junction_7	36.1837713087297	1	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGACTGTTTAAAATTAG	NA	False	NA	NA	False	NA	NA	NA	59113759	59120638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_59113902_59114564_59114637_59115070_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
14650	chr6	-	5023	10	NIC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-5	-24	intron_retention	FALSE	canonical	3	923	junction_2	48.2171016226493	30	120	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9167	False	NA	NA	False	NA	NA	NA	88495815	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
14651	chr6	-	3754	18	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	4	-38	intron_retention	FALSE	canonical	3	37	junction_14	199.193095445993	1	133	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTCCTCTGGAAAAATG	7909	False	NA	NA	False	NA	NA	NA	124806394	124792038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801611_124801814_124801949_124802074_124802142_124803261_124803388_124806247
14652	chr6	-	3765	10	ISM	ENSMUSG00000045962.17	ENSMUST00000203030.3	8163	26	89589	-60	35	60	3prime_fragment	FALSE	canonical	3	12	junction_5	2.94811092476036	4	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAGTGAGAGCTGAAAG	8667	False	NA	NA	False	NA	NA	NA	119925031	119901521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935
14653	chr4	-	2601	24	Intergenic	novelGene_2158	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCCCGAGGCGGGCGTA	NA	False	NA	NA	False	NA	NA	NA	148666858	148642885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148643034_148644002_148644141_148645468_148645593_148646762_148646867_148647167_148647335_148647476_148647592_148648296_148648372_148648564_148648679_148649054_148649199_148649658_148649851_148650734_148650891_148652821_148652972_148653106_148653159_148654843_148654954_148657373_148657425_148657565_148657646_148657733_148657842_148660265_148660361_148660605_148660682_148662874_148662961_148663835_148663914_148664814_148664874_148666230_148666289_148666737
14654	chr6	+	1823	11	NIC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	32	-8	intron_retention	TRUE	canonical	3	960	junction_9	76.9269783626005	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTTCACTCAAGGTCTC	5245	False	NA	NA	False	NA	NA	NA	83031533	83034649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
14655	chr18	+	2962	22	NNC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	-3	12	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	320.221890190093	1	57	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAGCATAATGCC	10	True	NA	NA	False	NA	NA	NA	3383253	3435397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383398_3384001_3384140_3399845_3399987_3405686_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
14656	chr11	-	3513	16	FSM	ENSMUSG00000020451.18	ENSMUST00000101638.4	3514	16	1	0	1	0	multi-exon	FALSE	canonical	3	97	junction_14	50.0611182012104	389	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	NA	False	NA	NA	False	NA	NA	NA	3359173	3294255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
14657	chr12	-	2884	8	FSM	ENSMUSG00000041645.15	ENSMUST00000221211.2	2669	8	10	-225	5	-126	multi-exon	FALSE	canonical	3	750	junction_7	42.8480942828671	126	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGACTTGCCTTTAATCCC	NA	False	NA	NA	False	NA	NA	NA	103392073	103375651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
14658	chr18	+	2596	24	NNC	ENSMUSG00000024507.7	novel	2684	24	NA	NA	26	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	64.8652230741655	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCCCTTCCTGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	50261293	50329329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316341_50324809_50324907_50328921
14659	chr10	-	2875	9	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-182	intron_retention	FALSE	canonical	3	1501	junction_8	197.847637084702	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCAGGGTTCCTATTAC	NA	False	NA	NA	False	NA	NA	NA	127358270	127353189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356985_127358156
14660	chr3	+	3437	4	NIC	ENSMUSG00000019710.14	novel	1234	5	NA	NA	48	-228	intron_retention	FALSE	canonical	3	982	junction_2	32.3144274623924	60	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	NA	False	NA	NA	NA	87826917	87830741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_87829356_87829437_87829534_87829694_87830373_87830516
14661	chr7	+	1169	10	Antisense	novelGene_ENSMUSG00000001794.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	262	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCTCCCAGTCCCATGC	8522	False	NA	NA	False	NA	NA	NA	29886416	29893358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_29886959_29887095_29887154_29889475_29889593_29889902_29889982_29890082_29890153_29891586_29891652_29891744_29891802_29891926_29892018_29892291_29892326_29893302
14663	chr6	-	3215	13	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	0	-536	combination_of_known_splicesites	FALSE	canonical	3	36	junction_9	251.686423065599	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTACTGTCAGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	148113520	148081112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148103993_148104041_148106273_148106383_148108030_148108174_148113467
14664	chr4	+	1740	6	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-34536	768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.4	10	61	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145138773	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145138851_145162487_145162684_145173283_145173346_145174461_145174578_145176036_145176697_145177597
14666	chr19	-	3286	17	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	446.781192077005	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTGCACAGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	40576831	40538705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545995_40546107_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40576753
14667	chr4	+	2268	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	104	3250	81	-1	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTGTGTCACTGCAGG	1	True	NA	NA	False	NA	NA	NA	40723025	40733899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
14668	chr1	-	5491	9	Antisense	novelGene_ENSMUSG00000026782.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	58	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCAGCGGCCGCGACGCC	NA	False	NA	NA	False	NA	NA	NA	60520167	60448904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_60449077_60473399_60473568_60476212_60476390_60483141_60483241_60486417_60486563_60487233_60487354_60492754_60492920_60509822_60509998_60515897
14669	chr4	+	2298	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-6	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	22.0544780033444	2	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	920	False	NA	NA	False	NA	NA	NA	145237354	145351913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145343640_145343746_145347127_145347255_145348721_145349326_145350417_145351516_145351690
14670	chr4	+	4553	18	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	234.550766964717	1	169	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATCTGAATTTGTACTG	NA	False	NA	NA	False	NA	NA	NA	130390676	130508864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390706_130396235_130396610_130428352_130428426_130457601_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
14671	chr10	+	2446	13	NNC	ENSMUSG00000004207.15	novel	2564	14	NA	NA	7137	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	293.215743476066	1	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTTGTGTCTCTTTG	1280	False	NA	NA	False	NA	NA	NA	60127419	60138379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60134997_60135281_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
14672	chrX	+	3592	23	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	58	-739	combination_of_known_junctions	FALSE	canonical	3	167	junction_1	147.492463737996	1	154	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTGGTTTTAAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	150799481	150844951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
14675	chr18	-	2528	13	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1459.43340175791	2	90	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACCAAAACACTTTGC	NA	False	NA	NA	False	NA	NA	NA	64649580	64632731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638464_64643439_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
14676	chr1	-	2628	20	NNC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	301.721762822414	3	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGATATTAAAGTGTGAAG	NA	False	NA	NA	False	NA	NA	NA	63215844	63182755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195370_63195492_63196290_63196437_63198908_63198952_63198996_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
14678	chr6	-	2561	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43548	-276	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCGCACCGGAAGGGCCAC	NA	False	NA	NA	False	NA	NA	NA	71852242	71808344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808515_71823324_71823459_71828754_71828868_71829749_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840258_71845555_71845786_71848408_71848540_71849774_71849908_71851300
14679	chr15	-	2759	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	72	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1570.92675104311	3	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	449	False	NA	NA	False	NA	NA	NA	36609145	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597799_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
14680	chr8	-	2152	13	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	31	-2	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	408.205081899881	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCAGCAGTCATGCATGC	7532	False	NA	NA	False	NA	NA	NA	41827779	41793699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41794723_41795921_41795979_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
14681	chr2	+	2921	21	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	11	-4	intron_retention	FALSE	canonical	0	0	junction_12	89.1634874822649	18	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTGTTGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	130266295	130285650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281635_130281760_130281838_130282150_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
14682	chr8	-	2762	9	NNC	ENSMUSG00000002885.15	novel	2980	18	NA	NA	1533	4825	intron_retention	FALSE	non_canonical	0	0	junction_1	0	36	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCTATGTTGACTCTC	NA	False	NA	76	True	NA	NA	NA	84449905	84445054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84446227_84446439_84446567_84447175_84447269_84447583_84447769_84448361_84448988_84449074_84449187_84449276_84449423_84449515_84449663_84449751
14683	chr10	+	2715	11	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	3	-1	intron_retention	FALSE	canonical	0	0	junction_10	528.624252186749	2	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCTTCCCTGAGCCCT	1600	False	NA	NA	False	NA	NA	NA	79690477	79700192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698719_79699021
14684	chr6	-	2622	6	NIC	ENSMUSG00000039985.15	novel	2737	6	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_5	837.245818144229	2	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847667	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847544
14685	chr4	+	5759	8	FSM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	2	9	2	-9	multi-exon	FALSE	canonical	3	28	junction_1	8.24621125123532	119	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAACTGAATTCCTG	7	True	NA	NA	False	NA	NA	NA	48124927	48186498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_48124959_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
14686	chr19	+	3522	2	Fusion	ENSMUSG00000044387.6_ENSMUSG00000033863.3	novel	414	2	NA	NA	-27	-12	multi-exon	FALSE	canonical	3	42	junction_1	0	41	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAAATTGTTCCAGCCAT	NA	False	NA	NA	False	NA	NA	NA	23112236	23145486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_23112319_23142046
14689	chr13	-	3289	12	NIC	ENSMUSG00000021494.10	novel	2199	17	NA	NA	-11	0	intron_retention	FALSE	canonical	3	646	junction_11	43.7530636471596	9	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTTCCTCTCTCACC	NA	False	NA	NA	False	NA	NA	NA	55684345	55678228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55683618_55683698_55683859_55684108_55684220_55684293
14690	chr6	-	3301	6	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	19083	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	1990.85836763945	4	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTGGATTTGAATCTT	NA	False	NA	NA	False	NA	NA	NA	144959486	144944881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144956121_144956979_144958408_144959323
14691	chr1	-	2888	14	NIC	ENSMUSG00000026019.16	novel	2850	14	NA	NA	0	-17	combination_of_known_junctions	FALSE	canonical	3	21	junction_13	254.854593651606	55	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAGTCTTTCCTGACTT	NA	False	NA	NA	False	NA	NA	NA	60137305	60116043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137148
14692	chr15	-	2321	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-89	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	956.507782973505	5	46	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCATTTGTTAGCCTGTTA	NA	False	NA	NA	False	NA	NA	NA	81283884	81247857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248441_81249121_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272526_81272602_81273851_81273925_81276465_81276524_81283685
14693	chr12	+	2035	8	ISM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	519	57	8	-57	3prime_fragment	FALSE	canonical	3	5416	junction_7	485.682940165029	11	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758758	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
14694	chr3	+	3343	11	FSM	ENSMUSG00000008604.12	ENSMUST00000008748.8	3330	11	-13	0	-13	0	multi-exon	FALSE	canonical	3	1295	junction_8	115.436605979213	746	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGTGGTTTGTTTGTTG	6092	False	NA	NA	False	NA	NA	NA	88461051	88477032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88470641_88471676_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
14695	chrX	+	3096	22	FSM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	-10	-1	-10	0	multi-exon	FALSE	canonical	3	75	junction_1	51.4515821537341	482	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTATTTCCGAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	133208893	133263386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
14696	chr15	-	1889	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	7	3	7	-3	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	638	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2752	False	NA	NA	False	NA	NA	NA	77855006	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
14699	chr7	+	2205	2	NNC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	379	False	NA	NA	False	NA	NA	NA	44465815	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465835_44478045
14700	chr19	-	3582	6	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	7	-7	intron_retention	FALSE	canonical	3	1367	junction_5	82.3349257605787	2	80	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAACCATAGCTTGTCTGG	6545	False	NA	NA	False	NA	NA	NA	4062687	4057509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057666_4057769_4058130_4058342_4058510_4058593_4061273_4061345_4061429_4062550
14702	chr11	-	2493	5	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	2	-86	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	271.523824921497	32	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACGGAGTTGCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	11758930	11750373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11751127_11751321_11751618_11751775_11753064_11756095_11756216_11758894
14703	chrX	-	3968	6	NIC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	101	-5	intron_retention	FALSE	canonical	3	210	junction_3	24.2520102259586	19	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCTTACAGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	12539806	12521122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
14704	chr9	-	3321	20	ISM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	14059	205	-2905	-205	3prime_fragment	FALSE	canonical	3	398	junction_4	59.1753579768619	2	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTTGAAATTTAAAGATAT	NA	False	NA	NA	False	NA	NA	NA	22286425	22243512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222
14705	chr11	-	1215	4	NNC	ENSMUSG00000047126.18	novel	898	6	NA	NA	27	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	573.424992673167	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTGTGGAAATAACATGTA	9137	False	NA	NA	False	NA	NA	NA	86593229	86585492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586346_86586425_86586517_86588090_86588167_86593034
14706	chr3	+	3599	13	NIC	ENSMUSG00000028060.15	novel	3636	13	NA	NA	-3	-19	intron_retention	FALSE	canonical	2	9	junction_9	129.536004218475	33	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTCTTCAATTATTTAT	16	False	NA	NA	False	NA	NA	NA	88593117	88620212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607671_88607822_88616086_88616249_88617164_88617250_88618067
14707	chr10	-	3042	21	NNC	ENSMUSG00000020124.11	novel	4666	21	NA	NA	-6	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	177.560862804842	2	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGCTGCTGTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	123032838	122949155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963957_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122968953_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
14708	chrX	-	3756	3	Antisense	novelGene_ENSMUSG00000025666.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCGCGCCTGCTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	80141193	80114287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_80114766_80127895_80128035_80138054
14709	chr4	+	2727	6	Intergenic	novelGene_2101	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	181.233550977737	1	108	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146428086	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146428160_146797298_146797381_146800408_146800518_146802050_146802664_146802900_146804630_146805883
14710	chr10	+	2866	5	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	719.421642710309	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCATATTTTGATTATGA	NA	False	NA	NA	False	NA	NA	NA	41395463	41407044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399270_41402814_41402880_41404667
14711	chr6	-	3221	16	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1113.42637535372	1	110	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATCCCTTTGGTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	88875657	88860459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861088_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864574_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
14712	chr6	-	2344	15	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43547	-249	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCGCACGCGCCGCCTCC	NA	False	NA	NA	False	NA	NA	NA	71852241	71808317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71828863_71829711_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849908_71851300_71851708_71852100
14713	chr1	-	3016	13	NNC	ENSMUSG00000073643.12	novel	4551	12	NA	NA	6	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.299471593825	37	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCTTGTTCCTTAATTT	NA	False	NA	NA	False	NA	NA	NA	79739432	79679995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_79680070_79681533_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
14714	chr9	+	2266	12	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-7	intron_retention	FALSE	canonical	3	1280	junction_11	416.754838053888	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTGATCTTTGAGTTCAA	1178	False	NA	NA	False	NA	NA	NA	108437667	108442776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
14715	chr2	-	2746	19	Antisense	novelGene_ENSMUSG00000026775.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCGGGCCCTCGAGAT	NA	False	NA	NA	False	NA	NA	NA	23087647	23046713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_23046742_23050201_23050334_23052510_23052675_23054509_23054602_23058288_23058405_23062965_23063118_23065179_23065262_23071036_23071120_23073223_23073314_23076187_23076341_23076876_23077010_23077790_23077855_23081024_23081138_23082418_23082574_23083098_23083252_23084528_23084653_23084742_23084818_23085331_23085420_23086898
14717	chr4	-	2994	18	Intergenic	novelGene_2162	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	48	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTAGGGCGGCTCTTCT	NA	False	NA	NA	False	NA	NA	NA	148661262	148642919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148643034_148644002_148644141_148645468_148645593_148646762_148646867_148647167_148647335_148647476_148647592_148648296_148648372_148648564_148648679_148649054_148649199_148649658_148649851_148650734_148650891_148652821_148652967_148653100_148653159_148654843_148654954_148657373_148657427_148657565_148657646_148657733_148657842_148660265
14718	chr13	-	3965	4	FSM	ENSMUSG00000022228.15	ENSMUST00000032820.15	3918	4	-47	0	23	0	multi-exon	FALSE	canonical	1	2	junction_2	8.64098759787715	103	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCATTATTGAGGATAGT	NA	False	NA	NA	False	NA	NA	NA	21637877	21626349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_21630000_21631955_21632065_21633610_21633687_21637747
14719	chr12	+	2547	14	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	94.7165812792606	12	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157612	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166108_85169598_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
14720	chr19	-	2929	24	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	-14	-154	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	277.31303243521	9	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGATGTAGAATATTTTT	NA	False	NA	NA	False	NA	NA	NA	37340024	37247982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37326418_37326557_37339912
14722	chr7	-	2014	7	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	897.784201365909	18	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACCCTTTTGTCTCACT	NA	False	NA	NA	False	NA	NA	NA	117728797	117718130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117718945_117718996_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
14725	chr9	-	3424	5	NNC	ENSMUSG00000032803.16	novel	3741	5	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	204.962649036355	944	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTGGAATGTGATGCTT	NA	False	NA	NA	False	NA	NA	NA	103242857	103230302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103233229_103233478_103233639_103237074_103237218_103241173_103241251_103242739
14726	chr5	-	4463	28	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	-1	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	117.427618309485	1	153	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAACTATTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	108777606	108717309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719735_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108738969_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771235_108772048_108772109_108772895_108772958_108777366
14727	chr19	-	2030	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.574727405454	9	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3732	False	NA	NA	False	NA	NA	NA	7017366	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998159_6998262_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
14728	chr11	+	2872	5	Antisense	novelGene_ENSMUSG00000019173.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCAGCCGCTCCGGAT	NA	False	NA	NA	False	NA	NA	NA	100605831	100629005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100606991_100607585_100608790_100609255_100609409_100610740_100610995_100628903
14729	chr17	-	1915	2	Genic_Genomic	ENSMUSG00000066878.6	novel	1988	1	NA	NA	7	-11	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90217870	90215900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_90216135_90216189
14730	chr13	-	2478	13	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-4	-95	intron_retention	FALSE	canonical	3	2035	junction_5	132.195877394115	24	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGATTGAATCTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	97334869	97312933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
14731	chr11	+	4113	23	NIC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	10	-1200	combination_of_known_splicesites	FALSE	canonical	2	27	junction_18	103.777903745379	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTCTGCAGTTTATTC	1926	False	NA	NA	False	NA	NA	NA	87017912	87110309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077
14734	chr5	-	1660	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	7	149	7	-149	mono-exon	FALSE	NA	NA	NA	NA	NA	47	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGGGGGGGGGTGATGGC	NA	False	NA	NA	False	NA	NA	NA	134975781	134974121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134974100_134975800
14735	chr9	+	4730	1	ISM	ENSMUSG00000037674.16	ENSMUST00000163401.9	7880	9	85853	7	7704	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTGACTGGATGTTAAGA	NA	False	NA	NA	False	NA	NA	NA	72525374	72530104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_72525400_72530100
14738	SIRV3	+	2019	3	FSM	SIRV3A	SIRV303	2018	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	1857	junction_1	482	62	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1962	7822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4568_4780_6057
14739	chr8	+	2884	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	32	0	-29	0	multi-exon	FALSE	canonical	3	239	junction_9	14.7126551724093	395	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	105951808	105979685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
14740	chr2	+	3100	22	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	115.474138420648	1	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAATAGTTGTTGTATGC	NA	False	NA	NA	False	NA	NA	NA	130266273	130285648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285315_130285433
14741	chr5	+	3290	9	NNC	ENSMUSG00000041264.17	novel	3604	9	NA	NA	0	2	intron_retention	FALSE	non_canonical	0	0	junction_8	138.46474054791	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGTTTCATTTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	149121476	149152246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149151879_149152071
14742	chr3	+	3126	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	5	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	279.992201057567	4	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTTTCCCTACTGCCA	NA	False	NA	NA	False	NA	NA	NA	102965668	102975225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102972788_102974058
14743	chrX	-	2496	14	NNC	ENSMUSG00000031402.13	novel	2525	12	NA	NA	8086	13628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	87	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCACCGCGTGCGTCCCGCC	NA	False	NA	NA	False	NA	NA	NA	74153368	74139710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74139732_74140437_74140508_74140888_74140974_74142065_74142158_74142366_74142550_74144009_74144162_74144591_74144725_74146025_74146172_74147945_74148066_74149258_74149377_74149881_74149986_74150775_74150853_74151782_74151910_74152300
14744	chr19	+	2814	20	NNC	ENSMUSG00000024900.6	novel	4317	19	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	84.9690835089715	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATCTGTCCCTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	3373303	3435733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754_3434032_3435515
14745	chr2	+	2282	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	139	599	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	834.276712569693	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAATGGCAAGAGCCGGC	NA	False	NA	NA	False	NA	NA	NA	162896745	162925218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922903_162924469_162924620_162925085
14746	chr16	-	2806	23	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	102.591392434516	23	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAACTCTGCCTTTAACTG	NA	False	NA	NA	False	NA	NA	NA	13486018	13355828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483766_13483846_13485397_13485476_13485874
14747	chr8	-	2343	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	2132.4258926162	3	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760036	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758431_43758980_43759877
14748	chr3	+	3008	7	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	-3	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	2182.98094484481	31	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3587	False	NA	NA	False	NA	NA	NA	88486944	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488973_88489518_88489833_88490008_88491193_88494171_88494250_88495187
14749	chr11	+	3400	18	NNC	ENSMUSG00000020280.13	novel	3559	18	NA	NA	18	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_16	30.4802392165639	17	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGCATTGTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	23616205	23682877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678935_23679075_23681320
14750	chr12	-	3189	13	NNC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_12	101.824467699184	18	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	65219384	65179509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205406_65219222
14751	chr7	-	2212	6	NIC	ENSMUSG00000070436.13	novel	2128	6	NA	NA	-40	-5	combination_of_known_junctions	FALSE	canonical	3	14	junction_5	745.240202887633	80	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTCCCATATCATTCTTT	NA	False	NA	NA	False	NA	NA	NA	99002244	98994606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002093
14752	chrX	-	3255	13	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	13	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	618.850339787865	4	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAAACCTGTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	100129613	100122817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100122975_100123016_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125641_100125812_100126020_100126139_100126253_100126396_100126575_100126753_100127881_100128877_100129064_100129193
14753	chr4	+	4637	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	8	1	intron_retention	FALSE	canonical	3	27	junction_7	82.94619343838	16	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTGTGTATCCTTAAG	-17	True	NA	NA	False	NA	NA	NA	11558929	11615806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601632_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11612439_11612617_11612819_11615442
14754	chrX	-	3763	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	155.726819301163	2	129	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTCCAAATAAAAATGAAAAC	NA	False	NA	NA	False	NA	NA	NA	59223621	59101354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105309_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175408_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
14755	chr2	+	3724	11	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-21	-6	intron_retention	FALSE	canonical	3	502	junction_8	50.6083985124999	22	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCAGATATTTTACTCA	NA	False	NA	NA	False	NA	NA	NA	174257622	174269289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
14756	SIRV3	+	1971	2	NNC	SIRV3A	novel	1807	2	NA	NA	2185	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGGTACCTAACAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	6188	8288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_6941_7069
14757	chr3	+	2760	4	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	174	-16	intron_retention	FALSE	canonical	3	403	junction_1	41.0960933531265	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTCTGTATA	7761	False	NA	NA	False	NA	NA	NA	108291883	108295479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108293724_108293815_108294053_108294593_108294712_108294914
14758	chr1	-	2746	17	NNC	ENSMUSG00000003458.13	novel	2901	17	NA	NA	105	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	129.563434632422	126	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTTGTTGTTTGGTA	9101	False	NA	NA	False	NA	NA	NA	171910257	171893585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171894364_171894897_171895067_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
14759	chr7	+	4211	18	NIC	ENSMUSG00000030816.9	novel	5279	20	NA	NA	7	-12	intron_retention	FALSE	canonical	3	259	junction_5	49.3941144946724	244	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCCAACCCTAGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	127187945	127202745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199799_127201638
14760	chrX	-	3889	5	NNC	ENSMUSG00000031370.13	novel	3867	5	NA	NA	-20	0	intron_retention	FALSE	non_canonical	0	0	junction_2	297.696993602556	867	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTTTAAAAACTTTTTA	NA	False	NA	NA	False	NA	NA	NA	162741614	162733381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_162736653_162737369_162737481_162739467_162739550_162740911_162740992_162741269
14761	chrX	+	2692	10	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-5	-3	intron_retention	FALSE	canonical	0	0	junction_5	254.725754246686	788	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAAGCCTGGCTCTTTA	6201	False	NA	NA	False	NA	NA	NA	73348856	73355461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352654_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
14762	chr10	-	2641	22	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-14	-971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	258.247416039651	2	51	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGTCTAGAGCATGGTC	NA	False	NA	NA	False	NA	NA	NA	77845584	77823751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827925_77828290_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
14763	chr6	-	3202	16	NIC	ENSMUSG00000053470.14	novel	4853	26	NA	NA	65	-4	intron_retention	FALSE	canonical	3	172	junction_15	77.2301035146845	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTCGCTGTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	71586058	71566024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71566700_71567421_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
14764	chr2	+	3681	13	NNC	ENSMUSG00000036646.14	novel	3755	13	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.29842033947	4	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGTGCAGTGTTACTT	3996	False	NA	NA	False	NA	NA	NA	25222771	25242223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25222989_25223446_25223556_25224388_25224463_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
14765	chr4	+	2349	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	337	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	197.893085956503	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGATCAGATTATACTTG	5385	False	NA	NA	False	NA	NA	NA	89055695	89099317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097814
14766	chr7	+	2995	7	ISM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	241	653	-35	-1	intron_retention	FALSE	canonical	3	285	junction_1	18.1995115929583	32	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTGCCTTTCAAAGC	NA	False	NA	NA	False	NA	NA	NA	12568928	12583851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898
14767	chr12	+	3329	22	NNC	ENSMUSG00000021111.16	novel	4380	22	NA	NA	3	-613	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	504.690048793786	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGATACAATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	105750955	105802504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105751086_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105801421
14768	chr4	-	3695	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	-37	6	-37	-6	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	5	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAACTCATACCGACTGG	9392	False	NA	NA	False	NA	NA	NA	56865225	56810940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
14769	chr10	-	2724	6	Antisense	novelGene_ENSMUSG00000019818.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGCACGGCGAGGCAGG	8413	False	NA	NA	False	NA	NA	NA	41407024	41395587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_41395694_41397910_41398002_41399166_41399238_41400099_41400139_41402819_41402878_41404665
14770	chr5	-	2389	14	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCTTGCGCAGGGAGT	NA	False	NA	NA	False	NA	NA	NA	33829542	33815806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816070_33818684_33818728_33818861_33818990_33821164_33821245_33821608_33822198_33824034_33824086_33824401_33824510_33825304_33825396_33825475_33825579_33826004_33826082_33826160_33826205_33826820_33826990_33828745_33828855_33829008
14771	chr17	-	950	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	-1	-1	-1	1	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	2060	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGGGGCGTGTGTGTCTGT	3467	False	NA	NA	False	NA	NA	NA	5490519	5461143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
14772	chr5	-	2417	10	Genic_Genomic	ENSMUSG00000104559.2	novel	775	1	NA	NA	297	56773	multi-exon	FALSE	non_canonical	0	0	junction_1	0	638	15	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCCAATCGTCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	111535858	111478607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_111478710_111486128_111486293_111494346_111494446_111495645_111495720_111497354_111497440_111519175_111519259_111528058_111528166_111530850_111530977_111533385_111533471_111534366
14773	chr14	+	3619	33	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	14	40	intron_retention	FALSE	non_canonical	0	0	junction_12	243.488206769727	1	122	17	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATGGAAAATTAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	47886786	47962381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47930842_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938615_47939118_47939201_47941617_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47954330_47954418_47957652_47957743_47961426_47961508_47962108
14774	chr4	+	2918	11	ISM	ENSMUSG00000029064.16	ENSMUST00000030940.14	3131	12	24258	5	-6834	-3	3prime_fragment	FALSE	canonical	3	1771	junction_1	635.617652366578	975	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGACTCTGGTGTGATGGT	NA	False	NA	NA	False	NA	NA	NA	155600084	155643721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
14775	chr5	+	2763	8	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	995.176366278862	2	79	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCATTTATTCAGTTAT	NA	False	NA	NA	False	NA	NA	NA	34493855	34510783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574_34508931_34508994
14776	chr8	-	4924	43	NNC	ENSMUSG00000032815.17	novel	4485	43	NA	NA	-5	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	42.5830654171052	9	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATAATCTGTGTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	124045320	123995045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_123995289_123995483_123995577_123995677_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001070_124001136_124001206_124001313_124001870_124002044_124004568_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043198_124044800_124044911_124045213
14777	chr5	-	2851	15	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	24	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	305.667352872767	17	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATTGTGGATCACTGG	NA	False	NA	NA	False	NA	NA	NA	38718954	38684161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692682_38694479_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704323_38704435_38708719_38708811_38718422_38718545_38718858
14778	chr13	-	2442	2	Antisense	novelGene_ENSMUSG00000071180.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAGCACACAGGAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	108185709	108182396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_108183100_108183970
14779	chr19	+	3199	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	146	8	-54	-8	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	860	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGCCTCTCATGCTCCC	NA	False	NA	NA	False	NA	NA	NA	6326900	6350118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
14780	chr4	+	4132	17	NNC	ENSMUSG00000006445.4	novel	969	4	NA	NA	-11564	-4	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	35.2650677016222	219	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTTTGGCTTTCATTCC	3177	False	NA	NA	False	NA	NA	NA	141016986	141056691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141017405_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
14781	chr1	+	2369	5	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	-2	intron_retention	FALSE	canonical	3	4541	junction_4	602.010952973449	316	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGAACTGTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863375_160863552_160865118_160865564_160865608_160865794_160865843_160866026
14783	chr19	+	4002	8	NNC	ENSMUSG00000024780.8	novel	5179	7	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	66.5278827535754	241	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTGTAGTTATGATT	3840	False	NA	NA	False	NA	NA	NA	28967770	28997632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405_28995914_28997214
14784	chr15	-	4983	5	NIC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	19	-1	intron_retention	FALSE	canonical	3	2867	junction_4	188.322197310885	4	102	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTCCGCCTCTTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	75773085	75767339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75767441_75767580_75768314_75768488_75768590_75768668_75772612_75772980
14786	chr1	+	2829	11	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	302.9355707077	2	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAATGAGTAGTCCTC	NA	False	NA	NA	False	NA	NA	NA	93406714	93437447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427013_93431194_93431241_93433265_93433324_93434684_93434805_93435434
14787	chrUn_JH584304v1	-	2667	6	Intergenic	novelGene_4606	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	296	junction_1	217.665431339016	39	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCAACAATCTTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	59209	52193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_56985_57152_58563
14788	chr15	-	1727	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	43	83	-21	-83	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	31601907	31591028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
14789	chr5	+	2844	13	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	31	550	intron_retention	FALSE	non_canonical	0	0	junction_3	284.596632192926	2	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTAACTTTGTGGTAAG	NA	False	NA	NA	False	NA	NA	NA	31652168	31668753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652956_31654654_31654695_31655683_31655863_31656077_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
14790	chr2	+	1263	1	NIC	ENSMUSG00000027655.15	novel	3212	21	NA	NA	-110	4827	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTGGAGCTGGCTCCC	NA	False	NA	NA	False	NA	NA	NA	158692438	158693701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_158692400_158693700
14791	chr2	+	4233	36	NIC	ENSMUSG00000038685.19	novel	3505	28	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	76.7130034476502	1	153	16	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	180961732	180998409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961837_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716_180997873_180997950_180998052_180998150
14792	chr1	-	2057	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2065.09556376939	2	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287096	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278301_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
14793	chrX	-	3397	5	NNC	ENSMUSG00000079432.2	novel	3698	5	NA	NA	29	161	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	88.6097483350449	6	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	NA	NA	NA	134078352	134068211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134070935_134071511_134071664_134073399_134073700_134077932_134078052_134078249
14794	chr17	-	2820	12	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	2	0	intron_retention	FALSE	canonical	3	1762	junction_11	196.001307130065	5	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	45906480	45896127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901265_45903104_45903188_45904257_45904359_45906407
14796	chr6	-	3727	6	NIC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	35	-29	intron_retention	FALSE	canonical	1	1	junction_2	1641.52436472932	1079	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAACGATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	39397361	39374766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39376369_39376731_39376871_39378143_39378359_39381581_39382895_39387021_39387151_39397032
14797	chr10	-	2184	8	NIC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	3	1	intron_retention	FALSE	canonical	3	12	junction_7	398.361542279557	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGAATCTCTTTCATATT	8700	False	NA	NA	False	NA	NA	NA	128540447	128533806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540356
14798	chr5	-	2880	4	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	12163	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.3380947522857	1	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGGTCATGGTATCTT	NA	False	NA	NA	False	NA	NA	NA	109826744	109822408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109823190_109823335_109825258_109826379_109826441_109826628
14799	chr4	-	4091	8	NIC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	10	-3	intron_retention	FALSE	canonical	3	1430	junction_4	139.621938513565	2	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTCCTCGGTCATCTGC	NA	False	NA	NA	False	NA	NA	NA	124830700	124812260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_124812824_124813405_124813493_124814051_124815098_124815792_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
14800	chr18	+	2983	4	NNC	ENSMUSG00000057561.11	novel	1905	4	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	692.734837838805	656	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTAAATGTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730790	46743276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731707_46731768_46732327_46732468_46740570
14801	chr8	+	2363	4	NNC	ENSMUSG00000052446.18	novel	2713	4	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	198.595624881875	89	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72704946	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719637_72719765_72721742_72723603_72723859
14802	chr15	-	2539	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	275	3	275	-3	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	1	51	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGATGGTTATGCTTTTA	652	False	NA	NA	False	NA	NA	NA	36608942	36595907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
14803	chr13	+	2185	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	592.204027341929	1	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCACTCTTGGTATTGA	NA	False	NA	NA	False	NA	NA	NA	3588127	3615814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607062_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
14804	chr11	-	2921	14	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9017	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_10	553.861324578549	1	75	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	407	False	NA	NA	False	NA	NA	NA	106615237	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106590417_106590712_106605727_106605755_106605844_106606011_106615168
14805	chr2	+	2981	7	NIC	ENSMUSG00000026893.5	novel	3330	8	NA	NA	44	-131	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	103.484969386326	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGAAATGTGCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	62494672	62524322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_62494804_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
14807	chr4	+	2518	4	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-4	-171	multi-exon	FALSE	canonical	3	27	junction_1	32.782108941718	1	114	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCTTACAGATGTGAAG	NA	False	NA	NA	False	NA	NA	NA	147576869	147669484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147661528_147661587_147665698_147665826_147667290
14808	chr13	-	2365	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	13	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	275.753965398698	2	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGAGGCGAGCTATGAC	NA	False	NA	NA	False	NA	NA	NA	6698800	6631566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636519_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
14809	SIRV7	-	2361	6	NNC	SIRV7A	novel	2498	5	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1329.47818334864	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147906	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2207_2328_2676_2993_3112_3809_3897_114680_114989_147611
14810	chr5	-	4082	32	NIC	ENSMUSG00000060261.17	novel	4021	33	NA	NA	103	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_23	87.7984282082411	360	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	808	False	NA	NA	False	NA	NA	NA	134343427	134266696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272442_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
14811	chr2	-	3628	17	FSM	ENSMUSG00000027244.15	ENSMUST00000028678.9	3604	17	-36	12	21	-12	multi-exon	FALSE	canonical	3	29	junction_7	76.9829526583646	275	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTACTTCATAGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	91540900	91504975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512482_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
14812	chr11	+	2006	8	Antisense	novelGene_ENSMUSG00000119662.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCGGAGTGCCCGCCTAT	NA	False	NA	NA	False	NA	NA	NA	69558046	69563141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69558600_69558846_69558953_69559029_69559159_69559229_69559580_69559903_69560069_69560956_69561574_69561753_69561803_69563104
14813	chr10	+	3344	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	-14	-5	-14	5	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	471	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCTGACTGAGTGGTGC	NA	False	NA	NA	False	NA	NA	NA	82694998	82733551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
14815	chr1	-	2202	13	NNC	ENSMUSG00000001674.12	novel	2258	13	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	223.934452215127	2014	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAATGTTTTTTATACC	NA	False	NA	NA	False	NA	NA	NA	121495700	121481570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489294_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
14816	chr1	-	2666	3	ISM	ENSMUSG00000043716.14	ENSMUST00000125005.2	784	4	-22	-1180	-4	-5	intron_retention	FALSE	canonical	3	6432	junction_1	107	4	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGCAAATTGAAATGTG	NA	False	NA	NA	False	NA	NA	NA	16174630	16171534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16172824_16172915_16173054_16173391
14817	chr11	-	3600	18	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	101.973977276178	2	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3533	False	NA	NA	False	NA	NA	NA	115494725	115475080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479248_115479311_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
14818	chr4	+	3159	11	Antisense	novelGene_ENSMUSG00000037443.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	38	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAGGAACATCGAACTTCC	NA	False	NA	NA	False	NA	NA	NA	133857175	133883341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133858751_133859542_133859769_133861379_133861488_133864881_133864932_133866141_133866240_133875320_133875476_133875919_133876076_133879415_133879600_133881118_133881237_133881572_133881708_133882987
14819	chr18	+	4331	21	Antisense	novelGene_ENSMUSG00000042211.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	67	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGGTATTTCTTAAAGCC	NA	False	NA	NA	False	NA	NA	NA	62637133	62681922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_62637951_62638544_62638658_62639006_62639113_62639674_62639818_62640901_62641068_62643772_62643882_62644082_62644186_62647865_62648610_62650031_62650214_62651561_62651683_62652824_62653038_62653752_62653899_62655422_62655591_62659201_62659332_62660245_62660340_62662620_62662758_62666571_62666742_62666964_62667135_62669185_62669320_62673951_62674115_62681720
14821	chr6	+	3118	2	Antisense	novelGene_ENSMUSG00000029782.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	62	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGCGCAGAGGCAAGACT	NA	False	NA	NA	False	NA	NA	NA	30505729	30509729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_30508802_30509683
14822	chr8	-	1762	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1757.75174228331	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760071	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43748732_43748799_43749574_43753664_43753743_43757512_43757597_43759877
14823	chr2	-	3488	16	NIC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	-115	-1	combination_of_known_junctions	TRUE	canonical	3	28	junction_15	61.7638513479635	169	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTCCTATTCCAAATGT	NA	False	NA	NA	False	NA	NA	NA	91536194	91504964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91535925
14824	chr8	+	2436	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	-10	-5	7	-1	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTGTGTTTCTGTAACT	2110	False	NA	NA	False	NA	NA	NA	13388757	13428447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
14825	chr2	+	4884	22	Intergenic	novelGene_2755	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGACAAAGCGCGCGAAAAT	NA	False	NA	NA	False	NA	NA	NA	156987812	157046454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_156989597_156992588_156992754_156994815_156994965_157001579_157001657_157003297_157003367_157005455_157005634_157009152_157009364_157011783_157012051_157016694_157016826_157017445_157017611_157019136_157019275_157029852_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035981_157037196_157037360_157037459_157037589_157037678_157037744_157038073_157038276_157041335_157041469_157046218
14826	chr11	-	3468	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1520.69794393443	1	157	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9654	False	NA	NA	False	NA	NA	NA	106679320	106671180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676119_106676218_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677785_106677835_106677901_106679098
14827	chr12	-	2807	7	NIC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	5619	0	intron_retention	FALSE	canonical	3	1852	junction_5	99.47138058535	2	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108848724	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841712_108846968_108847078_108848620
14828	chrX	+	2728	12	Antisense	novelGene_ENSMUSG00000035150.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	83	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAATGCTCGGCAGCCGC	NA	False	NA	NA	False	NA	NA	NA	93233170	93256256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93234534_93239879_93240049_93240891_93241063_93243318_93243467_93244497_93244588_93246419_93246545_93247547_93247718_93248657_93248749_93252933_93253057_93253141_93253266_93255320_93255388_93256169
14831	chr5	+	3152	13	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	7	0	intron_retention	FALSE	canonical	3	792	junction_6	79.6252943479646	131	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815478	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
14832	chr10	-	3192	11	NIC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	-13	-6	intron_retention	FALSE	canonical	3	99	junction_10	273.114701178827	3	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGCTCTGCCTCTCTGCT	4822	False	NA	NA	False	NA	NA	NA	80895962	80879916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
14833	chr5	+	1914	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-27	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1084.55647616895	16	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAATATATTCTCGCTGT	729	False	NA	NA	False	NA	NA	NA	77099596	77115346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114613
14834	chr16	-	3012	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-9	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	391.35030164004	2	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGCAATTAACAAAGCTAC	8101	False	NA	NA	False	NA	NA	NA	4867736	4831823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832601_4832841_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867672
14835	chr15	-	6188	41	FSM	ENSMUSG00000036529.18	ENSMUST00000144585.9	6165	41	-20	-3	-4	3	multi-exon	FALSE	canonical	3	242	junction_22	71.0688002923927	137	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACGCCTGCATCAGCAC	NA	False	NA	NA	False	NA	NA	NA	89199478	89172482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89172929_89173014_89173147_89173224_89173313_89173807_89174020_89174125_89174234_89177638_89177870_89177941_89178073_89178147_89178275_89178346_89178533_89178605_89178708_89179335_89179516_89179597_89179780_89180154_89180233_89183685_89183824_89183907_89184105_89184423_89184632_89184730_89184868_89184975_89185155_89186045_89186174_89186384_89186581_89186654_89186729_89186807_89186981_89187079_89187349_89187422_89187582_89187675_89187745_89188012_89188163_89188887_89189001_89189083_89189289_89189365_89189465_89189546_89189676_89189746_89189861_89190197_89190276_89190382_89190497_89190571_89190681_89190780_89190914_89191032_89191139_89191695_89191807_89191889_89192049_89192224_89192363_89192687_89192774_89199264
14836	chr10	-	2677	21	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	631.238671185472	1	57	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	127147503	127132094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132746_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146308_127146339_127147428
14837	chr11	-	4733	21	Antisense	novelGene_ENSMUSG00000020741.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	29.4225678688995	20	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCTTCCCACTGTCTGAG	NA	False	NA	NA	False	NA	NA	NA	74561664	74550323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_74550432_74550517_74550674_74550772_74550899_74551175_74551324_74551487_74551587_74552225_74552916_74554203_74554431_74554607_74554707_74554848_74554956_74555597_74555753_74555832_74555890_74556002_74556252_74556517_74556600_74556744_74557119_74557765_74557845_74557923_74558052_74558142_74558258_74558485_74558585_74558670_74558802_74558886_74558962_74560235
14838	chr5	+	2785	5	NIC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	13	-10	intron_retention	FALSE	canonical	3	460	junction_1	20.6518764280634	20	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTCTCATACAGTTTC	NA	False	NA	NA	False	NA	NA	NA	100187856	100216609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_100188162_100206998_100207101_100208832_100210135_100211617_100211742_100215657
14839	chr10	-	3023	10	NIC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	31	3	combination_of_known_junctions	FALSE	canonical	3	99	junction_9	135.429996494932	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTTGTCTTACACATTT	NA	False	NA	NA	False	NA	NA	NA	117546166	117524796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545850
14840	chr8	+	3322	12	NNC	ENSMUSG00000001482.16	novel	3191	12	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	84.1983097924229	19	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	NA	False	NA	NA	NA	124170010	124190001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124170185_124174431_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
14841	chr5	-	2588	12	NNC	ENSMUSG00000029657.16	novel	3240	17	NA	NA	13	2	intron_retention	FALSE	canonical	0	0	junction_3	394.73822270311	4	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGGCTTTGTCTCCGA	NA	False	NA	NA	False	NA	NA	NA	149559790	149540307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_149541176_149541851_149542014_149542210_149542276_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
14842	chr11	-	1777	10	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	67	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	817.352365194406	12	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGTTGTGATATTTTTA	5268	False	NA	NA	False	NA	NA	NA	88846224	88814866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826732_88835200_88835357_88837970_88838061_88843231_88843381_88846119
14843	chr2	-	4474	8	Antisense	novelGene_ENSMUSG00000033943.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTTTTCTCCATCTCT	NA	False	NA	NA	False	NA	NA	NA	119797323	119778318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119778773_119781564_119781695_119783355_119783406_119788635_119788844_119790819_119790884_119791200_119791438_119792271_119792449_119794169
14844	chr13	+	2206	1	Antisense	novelGene_ENSMUSG00000034928.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACAGTCCTCCCCGGGCC	NA	False	NA	NA	False	NA	NA	NA	54827269	54829475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_54827300_54829500
14845	chr6	+	4555	9	NNC	ENSMUSG00000035158.16	novel	2113	10	NA	NA	16096	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	18.3059928711884	124	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTTGACCAGTTGTG	4131	False	NA	NA	False	NA	NA	NA	97933974	97998310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_97934147_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97983101_97983159_97987355_97987432_97990629_97990778_97994734
14846	chr3	-	4070	17	Antisense	novelGene_ENSMUSG00000001415.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGATGGCTCCTCCTC	NA	False	NA	NA	False	NA	NA	NA	88266380	88243594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88243804_88249163_88249269_88249752_88249870_88250184_88250343_88252668_88252760_88253751_88253841_88254823_88254901_88256445_88256574_88256681_88256748_88257318_88257530_88258001_88258139_88258282_88260443_88261179_88261256_88261834_88262013_88262882_88263043_88265958_88266017_88266330
14847	chr9	-	3992	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	13	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	40.4374517001257	145	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTCATTTCCAGCATT	NA	False	NA	NA	False	NA	NA	NA	114762934	114728462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114728524_114728747_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
14849	chr19	+	2712	11	Antisense	novelGene_ENSMUSG00000041360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAACAAAAGCCAAAAC	NA	False	NA	NA	False	NA	NA	NA	27366240	27404529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_27367714_27371637_27371727_27373689_27373783_27376281_27376507_27377080_27377221_27389580_27389654_27400052_27400150_27400907_27400982_27401608_27401745_27403195_27403415_27404436
14850	chr11	-	4039	24	NIC	ENSMUSG00000001441.14	novel	4215	23	NA	NA	72	-5	combination_of_known_junctions	FALSE	canonical	3	8	junction_21	95.1456151944862	505	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGAATTTGTTGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	97171162	97096674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97098095_97103105_97103154_97103857_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97154721_97154853_97158420_97158506_97171026
14852	chr4	+	4683	19	NIC	ENSMUSG00000057530.15	novel	728	5	NA	NA	61	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	12.6238310789994	96	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTGTCTGTGTGTCTG	517	False	NA	NA	False	NA	NA	NA	137640842	137692540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137640941_137641078_137641166_137648331_137648474_137653529_137653743_137662571_137662694_137663968_137664116_137664649_137664716_137665934_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
14853	chr8	+	3410	1	ISM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	8587	2	8524	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTCATGTGTACTTAAT	NA	False	NA	NA	False	NA	NA	NA	13928227	13931637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_13928200_13931600
14854	chr1	-	4788	6	ISM	ENSMUSG00000037503.13	ENSMUST00000047534.12	5030	7	6252	4	6151	-4	3prime_fragment	FALSE	canonical	3	412	junction_3	31.0779664714408	287	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATATTCTGACCTTTTCG	NA	False	NA	NA	False	NA	NA	NA	34875894	34852310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_34856486_34857077_34857208_34858672_34858851_34858947_34859091_34867847_34867929_34875813
14855	chr3	+	3072	17	NNC	ENSMUSG00000027722.15	novel	2916	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	143.927879074903	3	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	37474459	37633245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37610340_37610457_37632824
14856	chr5	+	4770	10	NNC	ENSMUSG00000029636.12	novel	5196	10	NA	NA	305	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	41.9576506068255	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTGTAACCCTACATGGT	NA	False	NA	NA	False	NA	NA	NA	146322099	146410411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_146322149_146358727_146358816_146372134_146372171_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029
14857	chr3	+	2367	18	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	31	122	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	402.986077360885	3	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAGTCTAAAATATTTTG	4890	False	NA	NA	False	NA	NA	NA	34074287	34123642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093262_34093384_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
14858	chr7	-	3067	19	FSM	ENSMUSG00000030766.16	ENSMUST00000098060.5	3102	19	35	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	64.8370226504336	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	NA	False	NA	NA	NA	122969074	122878493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
14860	chr4	-	1991	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	2	2414	2	3	multi-exon	FALSE	canonical	3	482	junction_1	226.647613038099	329	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCATGCTGGTGGGTTTTA	2494	False	NA	NA	False	NA	NA	NA	129229161	129203306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
14863	chr4	+	2337	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	25	4	25	-4	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	1693	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATTAGGAACTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	124923809	124949165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
14864	chr3	-	4089	4	ISM	ENSMUSG00000038975.15	ENSMUST00000198094.2	631	7	930	-2127	8	0	intron_retention	FALSE	canonical	3	638	junction_2	98.770215933527	1	100	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	7084	False	NA	NA	False	NA	NA	NA	153617662	153612923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_153615097_153615182_153615236_153615700_153615799_153615897
14865	chr16	-	3433	19	NIC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	20	junction_18	83.3667525581917	287	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGTTTATTGCATCTAC	NA	False	NA	NA	False	NA	NA	NA	17540754	17469079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17524262_17524348_17540619
14866	chr6	-	2253	11	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	-9	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	231.585491773556	1701	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTAGCCTCACAGTTCT	NA	False	NA	NA	False	NA	NA	NA	95695790	95451129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632421_95632581_95695669
14867	chr6	+	1854	6	NNC	ENSMUSG00000012396.13	novel	2011	5	NA	NA	-22	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2078.11216251674	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTTAGTGGTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	122684501	122691584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100_122690528_122690698
14868	chr1	+	2363	5	NNC	ENSMUSG00000053332.14	novel	2556	4	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	2236.77662887916	189	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
14869	chr11	-	3836	38	NNC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	55989	164247	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	59	22	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTACGGGGCGCGCAAGC	NA	False	NA	NA	False	NA	NA	NA	121507990	121342775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_121342985_121344456_121344504_121350222_121350323_121351232_121351335_121352077_121352225_121352575_121352634_121366364_121366495_121383380_121383428_121384582_121384716_121387818_121387962_121389859_121389922_121390860_121390928_121394507_121394613_121431676_121431833_121441047_121441106_121447776_121447810_121451498_121451585_121464619_121464702_121466110_121466185_121466950_121467067_121469537_121469617_121473573_121473609_121481167_121481232_121482003_121482080_121483454_121483539_121485085_121485203_121487272_121487365_121488075_121488216_121492780_121492867_121493813_121493976_121494061_121494198_121494439_121494561_121496086_121496167_121499397_121499488_121500165_121500253_121500805_121500914_121502487_121502573_121507751
14871	chr11	-	2974	5	NNC	ENSMUSG00000038615.18	novel	4596	5	NA	NA	-2	-50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	679.490434075418	4	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGAAATGCTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	96713553	96708306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96709206_96709957_96711343_96712076_96712236_96712929_96713146_96713238
14872	chr11	+	3605	23	FSM	ENSMUSG00000038534.20	ENSMUST00000090020.13	3771	23	161	5	-31	-5	multi-exon	FALSE	canonical	3	35	junction_2	33.8534762061397	543	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGCCTGTGACCACTCA	NA	False	NA	NA	False	NA	NA	NA	96941614	96959725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
14873	chr11	-	2870	18	NIC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	-131	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_17	69.342188459451	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTGTGACTGGCTAA	6709	False	NA	NA	False	NA	NA	NA	54853874	54801614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54853658
14874	chr3	+	3465	9	ISM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	10028	1	141	5prime_fragment	FALSE	canonical	3	683	junction_7	60.6727904418447	60	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGCACCAGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	41510166	41561271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904
14875	chr4	+	2359	17	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	44	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	248.525204644821	2	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAACTGTGTTCGCTTTC	NA	False	NA	NA	False	NA	NA	NA	124923894	124949171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124936581_124936683_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
14876	chr19	+	4735	2	Genic_Genomic	ENSMUSG00000025001.12	novel	5868	22	NA	NA	22013	-573	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTTTTGAGAAGCTTA	554	False	NA	NA	False	NA	NA	NA	38954145	38958922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_38954275_38954316
14877	chr8	+	3704	21	FSM	ENSMUSG00000018796.14	ENSMUST00000110372.9	3429	21	21	-296	13	-174	multi-exon	FALSE	canonical	3	16	junction_1	90.7041344151412	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAACTTCATACTCGTAT	9528	False	NA	NA	False	NA	NA	NA	46944023	46988914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_46944199_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
14880	chr5	+	2521	11	NNC	ENSMUSG00000029131.15	novel	2918	10	NA	NA	-4	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	721.586924770675	95	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTTATACATTTATT	4591	False	NA	NA	False	NA	NA	NA	29940982	29991459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028_29991128_29991210
14881	chr16	+	1731	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCAATGGCAGCCGCTGC	NA	False	NA	NA	False	NA	NA	NA	45973363	45975094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45973400_45975100
14882	chr8	-	2215	9	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	264.75413122367	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615020	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598961_96602467_96602503_96604340_96604498_96614844
14883	chr18	-	2175	16	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	26	161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	231.106093962636	2	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTTTGACATTTCTTTT	85	False	NA	NA	False	NA	NA	NA	10029996	9995432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010058_10012226_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
14885	chr18	-	2404	14	NIC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	1424.68576001619	1	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACCAAAACACTTTG	NA	False	NA	NA	False	NA	NA	NA	64649597	64632732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
14886	chr19	-	1910	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1376.25320667706	3	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902322	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883379_15883413_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894491_15895565_15895776_15896818_15896889_15898299_15898361_15902227
14887	chr19	+	4066	20	FSM	ENSMUSG00000010097.16	ENSMUST00000184970.9	4042	20	-27	3	7	-3	multi-exon	FALSE	canonical	3	621	junction_4	65.017278760312	51	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTAGTTTGTGTCCCATT	8576	False	NA	NA	False	NA	NA	NA	8734443	8748268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
14890	chr4	+	2254	9	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-17	0	multi-exon	TRUE	non_canonical	0	0	junction_1	149.786462589247	1	85	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216477	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217416_147219028_147219122_147337800_147337859_147413438_147413566_147596801_147597072_147599250_147599370_147668172_147668844_147669020
14891	chr9	+	3849	15	Antisense	novelGene_ENSMUSG00000064145.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	129	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATTTCCATCTGAAACGA	194	False	NA	NA	False	NA	NA	NA	108480140	108522182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108482355_108482533_108482669_108484489_108484558_108485109_108485252_108485800_108485968_108487095_108487147_108488831_108488950_108490924_108491037_108492225_108492348_108493878_108494026_108494568_108494631_108497253_108497328_108506490_108506533_108521223_108521568_108522131
14892	chr5	-	2124	5	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	3	-528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3603.41874995122	6	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTAGTTAAATGACTT	6767	False	NA	NA	False	NA	NA	NA	148989847	148984039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987446_148989776
14893	chr14	-	5338	10	Fusion	ENSMUSG00000022159.17_ENSMUSG00000022160.19	novel	2159	9	NA	NA	297	-14379	intron_retention	FALSE	non_canonical	0	0	junction_1	0	579	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGGGGTGAGCGGAGTT	NA	False	NA	NA	False	NA	NA	NA	52533829	52516585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_52516690_52516844_52517112_52517275_52517345_52523114_52523359_52524184_52524445_52524755_52524987_52528215_52528297_52528929_52529674_52529974_52530139_52530655
14894	chr13	+	2863	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	88	76	88	-76	multi-exon	FALSE	canonical	3	487	junction_1	56.3576747213722	1115	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTTGTTAATATCTGG	NA	False	NA	NA	False	NA	NA	NA	8935624	8942411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
14895	chr18	-	2450	14	NNC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1471.99684444606	4	74	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACCAAAACACTTTGC	NA	False	NA	NA	False	NA	NA	NA	64649570	64632731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64644727_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
14896	chr15	+	3009	19	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	51	1	combination_of_known_splicesites	FALSE	canonical	3	38	junction_2	65.5982205796002	11	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775685	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57775788_57779365_57779513_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57833119
14897	chr10	+	2799	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-2	-33	intron_retention	FALSE	canonical	0	0	junction_9	476.947411496628	1	93	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGCTTTCCATTAAAG	1587	False	NA	NA	False	NA	NA	NA	79690464	79700160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698249_79698376_79698486_79698704_79698811_79698890_79698978
14898	chr1	-	3650	21	NNC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	-13	4	intron_retention	FALSE	canonical	0	0	junction_4	323.020939723728	1	34	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGTGTGAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	63216005	63182750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189111_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63214795_63215491_63215586
14899	chr14	-	3206	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	22	10	1	-10	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	2920	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAACCTGCCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	67246304	67222697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
14900	chr17	-	3088	13	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	294.140119198695	1	71	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACTGTGGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	29226919	29189858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193301_29194817_29194903_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
14901	chr16	-	2516	13	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	-5	58	intron_retention	FALSE	canonical	1	31	junction_4	602.929699237168	213	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATACCAAACGTCATTTG	9175	False	NA	NA	False	NA	NA	NA	91525516	91486355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489486_91489593_91489731_91489816_91491069_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
14902	chr4	+	1100	10	ISM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	39041	5453	-182	72	internal_fragment	FALSE	canonical	3	682	junction_4	252.384235777783	1	18	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGGTTTACATTTTAACC	NA	False	NA	NA	False	NA	NA	NA	137360491	137380389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268
14903	chr14	+	3660	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	45	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	152.072189603036	1	123	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32044020	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065292_32066288_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068781_32069444
14904	chr15	-	2753	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	-7	-99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	251.703872648342	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTCCCCCACTCCCTT	NA	False	NA	NA	False	NA	NA	NA	83033509	83010277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022394_83033395
14906	chrX	+	2418	6	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.4699879903904	504	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	133618700	133622666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619115_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620823
14907	chr11	+	1859	13	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	1442.04608446548	14	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940638	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952454_22953136
14908	chr3	+	3202	1	NIC	ENSMUSG00000032902.2	novel	4426	5	NA	NA	15384	-1209	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACAGTTCTTCCGCATG	NA	False	NA	NA	False	NA	NA	NA	104561367	104564569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_104561400_104564600
14909	chr2	-	3563	26	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	-39	-1666	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.3390259441457	1	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGCTTTTTAATGGAAAAT	NA	False	NA	NA	False	NA	NA	NA	62242614	62162082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62162996_62164609_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
14910	chr1	-	969	9	NNC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	-3	-1032	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	845.352293425646	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATCTCAGAAGTTGTAGA	NA	False	NA	NA	False	NA	NA	NA	125363221	125325257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125325319_125331235_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
14911	chr1	-	3253	8	FSM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	104	1521	-23	836	multi-exon	FALSE	canonical	3	259	junction_7	57.9852197916479	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCCACCTGCCTGGC	8695	False	NA	NA	False	NA	NA	NA	88205251	88191713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
14912	chr8	-	3807	4	Antisense	novelGene_ENSMUSG00000008450.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	235	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGACCGACTGTCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	106606701	106587287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_106587337_106602164_106602291_106602985_106603058_106603141
14913	chr18	+	2640	9	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	-45	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	194.53691005822	1241	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGTGGCCTGCATATA	NA	False	NA	NA	False	NA	NA	NA	52598719	52625005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515_52624796_52624858
14914	chr1	-	2888	24	NNC	ENSMUSG00000041406.15	novel	3179	24	NA	NA	-26197	-252	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	89.5497453922174	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATCTTTATTTGACATAAA	NA	False	NA	NA	False	NA	NA	NA	163848562	163781574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163822940_163823001_163848434
14915	chr8	+	2219	16	Antisense	novelGene_ENSMUSG00000031575.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	1.24721912892465	1	49	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCCACCCGAACCTGCC	NA	False	NA	NA	False	NA	NA	NA	26306911	26337698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_26307537_26307631_26307690_26308571_26308673_26309653_26309746_26312721_26312912_26313161_26313335_26317201_26317420_26318793_26318887_26321299_26321382_26322669_26322766_26323778_26323874_26324986_26325056_26326025_26326119_26329770_26329836_26330026_26330103_26337605
14916	chr17	-	2166	15	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	846.472078447858	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGTGCATCCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	45906449	45896126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45905157_45905280_45906407
14917	chr4	-	238	2	FSM	ENSMUSG00000028843.9	ENSMUST00000136408.2	368	2	43	87	43	-87	multi-exon	FALSE	canonical	3	1437	junction_1	0	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTGGGGTATGGGGTTT	9321	False	NA	NA	False	NA	NA	NA	133856005	133855237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133855397_133855926
14918	chr2	+	3264	21	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-16	-9	intron_retention	FALSE	canonical	0	0	junction_13	89.4004893722624	3	71	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGATTTGAAACCTAGGTT	1841	False	NA	NA	False	NA	NA	NA	130279539	130286180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
14920	chr3	+	3552	9	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	27	652	intron_retention	FALSE	canonical	3	910	junction_3	52.7843490061211	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCCTTGATTTTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	105866711	105875495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105867015_105867268_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
14921	chr2	-	3248	9	ISM	ENSMUSG00000039671.19	ENSMUST00000109269.8	6188	24	70158	-1151	43843	-3	3prime_fragment	FALSE	canonical	3	58	junction_8	38.060601348376	308	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGATGGCGTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	165650199	165626077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438
14922	chr19	+	2373	13	NNC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	352.751122133816	2	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTGTGATTTTCAGA	-1	True	NA	NA	False	NA	NA	NA	46064422	46072901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064593_46067147_46067198_46067314_46067446_46067620_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
14923	chr5	+	4559	35	NIC	ENSMUSG00000007080.15	novel	7163	49	NA	NA	-18	5336	combination_of_known_splicesites	FALSE	canonical	2	9	junction_9	56.96651113596	540	19	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAACACACCTTTGAAGT	NA	False	NA	NA	False	NA	NA	NA	110434224	110472379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824_110438980_110441125_110441268_110441580_110441662_110442374_110442483_110443093_110443180_110443383_110443504_110444871_110445005_110445213_110445328_110445598_110445812_110446106_110446215_110446757_110446887_110446965_110447069_110447154_110447302_110447638_110447785_110449873_110450023_110451440_110451534_110451720_110451866_110454192_110454351_110454632_110454829_110456801_110457017_110459872_110459976_110460599_110460681_110460771_110460895_110465655_110465866_110466091_110466302_110466481_110466626_110471403_110471545_110471795_110471950_110472025_110472133_110472286
14924	SIRV7	-	2426	5	FSM	SIRV7A	SIRV703	2498	5	72	0	72	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	1	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147846	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
14926	chr14	-	3919	9	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	0	intron_retention	FALSE	canonical	2	2	junction_4	160.226353559581	8	79	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607998	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59588668_59590099_59590831_59591756_59591825_59592588_59592639_59593476_59593600_59593765_59593900_59596924_59597033_59599182_59599305_59607902
14927	chr7	-	2003	6	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	936.632393204506	15	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTCACTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	117728797	117718122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725688_117726376_117726491_117728691
14928	chr8	-	3093	22	NNC	ENSMUSG00000039509.9	novel	5808	26	NA	NA	-1	-2161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	97.5413395703077	2	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAAGTCTGTTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	124676005	124626022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660243_124667784_124667882_124670993_124671098_124673231_124673351_124675736
14929	chr4	-	2646	3	NIC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-4	intron_retention	FALSE	canonical	3	1694	junction_1	131.5	8	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTTCTTTTTGTGTGTG	2	True	NA	NA	False	NA	NA	NA	41098180	41092725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41093703_41093781_41095272_41098001
14930	chr13	-	1365	2	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	1429	473	1429	-473	3prime_fragment	FALSE	canonical	3	496	junction_1	0	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34312908	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_34312515_34312854
14931	chr6	-	2527	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	12	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	833.564967807282	6	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGTTTTAGAGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	148847929	148822543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823007_148823129_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
14932	chrX	+	2053	9	ISM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	10002	2	-3034	-2	3prime_fragment	FALSE	canonical	3	3075	junction_1	229.446582835744	2	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGTGCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100483162	100492195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
14933	chr14	+	4303	16	ISM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	3	30837	3	-22	5prime_fragment	FALSE	canonical	2	66	junction_8	17.8940089291236	287	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAAAGTTGCTTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	99337345	99461092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994
14935	chr3	+	2190	14	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-1	-345	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	332.81096150018	24	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTTAACTTTCTACTT	4855	False	NA	NA	False	NA	NA	NA	34074252	34124126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112342_34123104
14937	chr17	-	713	2	FSM	ENSMUSG00000025728.17	ENSMUST00000124032.2	1103	2	-17	407	-11	-29	multi-exon	FALSE	canonical	3	321	junction_1	0	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAATCAGAGGGAGTGGAG	NA	False	NA	NA	False	NA	NA	NA	26160920	26155855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26156437_26160788
14939	chr13	-	1811	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-16	-126	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	644.722976150479	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTTTTTTTTTTAAATA	NA	False	NA	NA	False	NA	NA	NA	97334819	97312964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315773_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
14940	chr2	+	2911	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	15	-1569	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	239.550490502524	136	62	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACCAACTTTTGCCTG	1988	False	NA	NA	False	NA	NA	NA	5850115	5875137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
14941	chr2	+	428	5	NNC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	15770	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_4	45.3672514045098	2	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGGAGTTGCTCCAAAGA	1945	False	NA	NA	False	NA	NA	NA	122016752	122052648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122052546
14942	chr18	-	2975	26	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	-6492	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	482.242262768414	1	80	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCATGTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	42384449	42335409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343128_42350622_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357
14943	chr7	+	3439	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	305	-1022	10	1022	multi-exon	FALSE	canonical	3	986	junction_1	0	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTGTTCAGGATTGTA	380	False	NA	NA	False	NA	NA	NA	44465816	44481258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
14944	chrX	+	2152	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-44	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1452.17807914653	2	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473296	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483156_100485272_100485424_100486535_100486644_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
14946	chr11	-	3850	10	NNC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	29	-5	intron_retention	FALSE	canonical	0	0	junction_7	40.9932243723819	2	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTATTGTGTGTTAAT	1420	False	NA	NA	False	NA	NA	NA	61157924	61135683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61137148_61138754_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153172_61155071_61155158_61155889_61156122_61157679
14949	chr5	-	4238	27	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	0	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	99.6542840592463	1	114	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCAGTCTCTGGCTTGT	NA	False	NA	NA	False	NA	NA	NA	108777621	108717286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108730596_108730644_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108772895_108772958_108777366
14950	chr3	-	1728	1	FSM	ENSMUSG00000064984.3	ENSMUST00000083050.3	68	1	-816	-844	-816	844	mono-exon	FALSE	NA	NA	NA	NA	NA	6	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTTTGCTTCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	86046981	86045253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86045300_86047000
14951	chr9	-	2977	12	NIC	ENSMUSG00000056131.14	novel	2666	13	NA	NA	-18	-4	intron_retention	FALSE	canonical	3	372	junction_6	41.8760469216606	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGCCCCTTTCGATTGCT	NA	False	NA	NA	False	NA	NA	NA	86453913	86437057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
14952	chr4	+	2803	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	6	-8	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	208.120662116956	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGAGTTAAGTA	9704	False	NA	NA	False	NA	NA	NA	155648288	155675446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155648437_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
14953	chr18	-	3026	21	NNC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	21	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	177.192155582576	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAACTCTGGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	34757633	34732885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738980_34739040_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
14954	chr1	-	2563	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	-6	214	-6	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	1508	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624083	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
14955	chr12	+	2497	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-1	721	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	335.369282367297	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGGTTAACTCTTAGGGG	NA	False	NA	NA	False	NA	NA	NA	86516889	86567295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535433_86552588_86552700_86553122_86553285_86561054_86561273_86565594_86565857_86566103
14956	chr11	+	1161	1	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTCAGTCTTGTCGTCA	1129	False	NA	NA	False	NA	NA	NA	120468942	120470103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120468900_120470100
14957	chr11	-	2472	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	380	9	-32	-2	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	1	72	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCCATTGTCACTGCTG	3747	False	NA	NA	False	NA	NA	NA	120463699	120451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
14958	chr10	-	3057	9	NIC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	7	-5	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	134.311903791138	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCATTCACAGAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	127047447	127032940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127035014_127035181_127035286_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
14960	chr11	+	1977	2	Antisense	novelGene_ENSMUSG00000020719.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTTGCTTTATGTTATT	NA	False	NA	NA	False	NA	NA	NA	106671185	106673374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296
14961	chr12	+	3390	5	NNC	ENSMUSG00000043061.11	novel	762	3	NA	NA	-682	4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	76.3167740408359	2	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	30633742	30641218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_30634295_30635468_30635590_30637198_30637254_30638472_30638567_30638650
14962	chr15	+	2362	12	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	127	622	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	377.992369506262	18	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGGCCATGTTGTAGAG	NA	False	NA	NA	False	NA	NA	NA	85220572	85348035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259610_85260804_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
14964	chr11	-	2296	10	ISM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	-16	-607	-9	-390	intron_retention	FALSE	canonical	3	57	junction_9	50.8265022732564	353	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGGTGGCCCCAGACAA	NA	False	NA	NA	False	NA	NA	NA	97590483	97580038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590031
14965	chr18	+	680	3	FSM	ENSMUSG00000117869.2	ENSMUST00000237021.2	708	3	8	20	-2	-20	multi-exon	FALSE	canonical	3	167	junction_1	17	130	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGGGTGCAAACAATTTT	NA	False	NA	NA	False	NA	NA	NA	35686472	35690263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35686523_35687479_35687515_35689668
14966	chr12	+	2932	1	FSM	ENSMUSG00000021908.11	ENSMUST00000022467.11	1878	1	9	-1063	9	1063	mono-exon	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTAATATTAAGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	119224721	119227653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_119224700_119227700
14968	chr17	-	3341	3	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	10538.5	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACCTCCGTCTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	34174637	34170977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34171093_34171194_34172917_34173133
14972	chr14	+	2891	17	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	-35	-85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	340.216635946863	8	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTCTGGTCAGATAAAT	NA	False	NA	NA	False	NA	NA	NA	122344514	122396931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361153_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379847_122380849_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
14973	chr13	+	2604	24	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	3	35	combination_of_known_junctions	FALSE	canonical	3	14	junction_14	220.934174049104	858	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGCTGCCCTG	1312	False	NA	NA	False	NA	NA	NA	59733210	59782601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59766044_59766093_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
14974	chr14	-	2597	13	NNC	ENSMUSG00000021814.18	novel	2851	13	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	262.330725844729	1355	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGCTCTTTTGACCTAG	8164	False	NA	NA	False	NA	NA	NA	20530015	20505348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510273_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
14975	chr4	+	2737	12	Fusion	ENSMUSG00000086147.3_ENSMUSG00000078496.10_ENSMUSG00000078497.10	novel	1244	3	NA	NA	-2	2581	multi-exon	TRUE	non_canonical	0	0	junction_1	60.3707553304872	1	112	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147056430	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056568_147217303_147217441_147316807_147316901_147445778_147445910_147536170_147536264_147538037_147538160_147591995_147592098_147595209_147595337_147596799_147597093_147597343_147598100_147598936_147599361_147600202
14976	chr4	+	1380	7	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36369	768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.372677996249965	1	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145136940	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136958_145138756_145138787_145162615_145162684_145173283_145173342_145174456_145174578_145176036_145176753_145177856
14977	chr15	-	2983	10	FSM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	459	-842	6	842	multi-exon	FALSE	canonical	3	194	junction_5	53.0869308043159	535	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTAGTGATGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	44291244	44238624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
14978	chr15	-	2670	17	NNC	ENSMUSG00000022391.17	novel	2984	17	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	202.408621357886	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCGGAAGCTTCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	81614081	81588451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81588847_81589088_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
14979	chr16	+	6261	18	FSM	ENSMUSG00000022637.12	ENSMUST00000114471.3	6648	18	369	18	-12	-18	multi-exon	TRUE	canonical	3	25	junction_15	12.7088776425873	90	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAATGTTAACAAATGC	NA	False	NA	NA	False	NA	NA	NA	51851956	52028393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_51852049_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52009375_52009517_52014521_52014642_52024795
14980	chr6	-	2184	10	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	131	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1684.34698486746	2	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8616	False	NA	NA	False	NA	NA	NA	145021779	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953477_144955814_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144993017_144993090_145021614
14981	chr9	+	3967	14	Antisense	novelGene_ENSMUSG00000032405.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	12	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGCAAGCGCAATGAAGCT	2118	False	NA	NA	False	NA	NA	NA	62785647	62888165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_62787935_62792052_62792094_62794591_62794733_62799407_62799591_62800411_62800540_62803110_62803274_62810040_62810115_62820031_62820138_62826632_62826764_62827732_62827829_62830560_62830610_62830851_62830944_62859041_62859488_62888135
14982	SIRV7	-	2314	6	NNC	SIRV7A	novel	2462	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1807.99926991136	2	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147918	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2283_2426_2685_3003_3112_43028_43078_114680_114989_147608
14983	chr2	-	4659	18	NNC	ENSMUSG00000025815.14	novel	3852	18	NA	NA	3	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.4538401405885	8	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAACCATTTTACTCAA	NA	False	NA	NA	False	NA	NA	NA	5947551	5900905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5902352_5903140_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
14985	chr10	+	2091	14	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4952	7053	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAATCAGTTCAGAGGTT	NA	False	NA	NA	False	NA	NA	NA	86526704	86537723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_86526995_86527494_86527613_86528001_86528159_86528248_86528325_86529237_86529378_86529777_86530023_86530212_86530480_86531336_86531405_86531521_86531602_86531689_86531830_86532584_86532698_86534180_86534305_86534449_86534560_86537560
14987	chrX	+	2829	22	NIC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	36	-83	combination_of_known_junctions	FALSE	canonical	3	128	junction_18	227.387987924064	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCCGCAACAGCAGCAGC	NA	False	NA	NA	False	NA	NA	NA	143118900	143152684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556
14989	chr15	-	2218	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	523	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2404.04609726085	3	74	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGATGGTTATGCTTTT	12	True	NA	NA	False	NA	NA	NA	36608694	36595908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596812_36596900_36597207_36597339_36597700_36597794_36598270_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603189_36605664_36605802_36605987_36606182_36608557
14990	chrX	+	4282	27	Antisense	novelGene_ENSMUSG00000031161.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	90	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCAAGCCTCCGCCCATC	2292	False	NA	NA	False	NA	NA	NA	7796694	7814111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_7796776_7797021_7797165_7797254_7797394_7797517_7797620_7797703_7798199_7798301_7798481_7800416_7800566_7802312_7802505_7802624_7802689_7803179_7803317_7803544_7803715_7803870_7803995_7804081_7804251_7804464_7804533_7804624_7804731_7805680_7805781_7805844_7805903_7805996_7806065_7806156_7806284_7808082_7808154_7808273_7808375_7809624_7809724_7809879_7809977_7810812_7810853_7810951_7811038_7812901_7813271_7813363
14991	chr9	+	2916	20	NIC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	38	-1	intron_retention	FALSE	canonical	3	468	junction_2	43.1167326171516	1	74	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCCCTCTGGCGTCTCT	NA	False	NA	NA	False	NA	NA	NA	108385329	108393127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108390396_108390484_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
14992	chr2	-	4662	16	NIC	ENSMUSG00000075415.14	novel	4726	17	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	84	junction_7	27.5474540061731	99	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCTGGTTCTCTGTTGTA	4815	False	NA	NA	False	NA	NA	NA	31031973	30916220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30918896_30923041_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
14993	chr15	+	2716	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	635.166212614508	1	95	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCTGCCTGAGTGATTG	NA	False	NA	NA	False	NA	NA	NA	81756700	81799333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783419_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798555_81798828
14994	chr11	-	1468	8	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	13	-130	intron_retention	FALSE	canonical	3	1167	junction_2	103.038728601612	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGATCCGTAGTCATACA	NA	False	NA	NA	False	NA	NA	NA	119190827	119183455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119183761_119184384_119184524_119184717_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
14995	chr6	+	3361	24	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-31	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	262.083559309796	2	72	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTACTGTCGTGGTGGAG	-3	True	NA	NA	False	NA	NA	NA	28480396	28888820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512984_28520165_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707132_28724921_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880328_28883256_28883381_28884186_28884257_28884956_28885069_28886412_28886617_28888077_28888123_28888233
14997	chr17	+	2674	21	Antisense	novelGene_ENSMUSG00000077931.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	43	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCTCCAGCGGCGCCCGG	NA	False	NA	NA	False	NA	NA	NA	36267723	36280626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36268482_36268570_36268646_36268734_36268796_36268961_36269137_36269219_36269250_36269960_36270032_36270120_36270193_36270324_36270613_36270759_36270881_36271000_36271085_36271465_36271623_36271711_36271731_36272879_36272979_36274019_36274129_36274212_36274285_36274459_36274570_36274644_36274688_36274808_36274939_36275145_36275233_36275991_36276016_36280537
14998	chrX	-	2835	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	53	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	140.432799209266	34	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGACTGTTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	149800265	149766133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766830_149768813_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
14999	chr1	+	4188	30	NNC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	40.9092554555357	120	21	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCAGTGTCGGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	10110053	10206993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145082_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156105_10158294_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
15000	chr3	+	1988	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1167.56215584229	168	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986967	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987124_89993821_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
15001	chr17	-	3226	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	26.7776025812618	116	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAAGTTGGACTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	22181450	22145946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160757_22160832_22172868_22173035_22181236
15002	chr9	-	1210	1	ISM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	133933	31	7513	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	27	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAATCTTTTTAAGAG	NA	False	NA	NA	False	NA	NA	NA	65600913	65599703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_65599700_65600900
15004	chr8	+	2740	23	FSM	ENSMUSG00000032939.15	ENSMUST00000212824.2	2928	23	-26	214	-2	-8	multi-exon	FALSE	canonical	3	35	junction_1	328.081966678305	1086	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAAACATTCTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	94941202	95041480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94941260_94947187_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
15005	chr5	-	2431	6	Fusion	ENSMUSG00000105471.2_ENSMUSG00000072762.10	novel	2001	4	NA	NA	11	475	multi-exon	TRUE	non_canonical	0	0	junction_1	58.5094864103249	1	34	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	109944153	109883380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_109883543_109883605_109884776_109884859_109885666_109886815_109886877_109887064_109887192_109944048
15007	chr11	+	1814	5	FSM	ENSMUSG00000020849.14	ENSMUST00000134745.8	599	5	3	-1218	3	-4	multi-exon	FALSE	canonical	0	0	junction_3	4641.68485035337	35	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646479_75650117_75650255_75655445
15008	chr1	+	3102	20	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	51	18	intron_retention	FALSE	non_canonical	0	0	junction_12	120.619476751249	9	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTGTTAAGTGCTTT	9421	False	NA	NA	False	NA	NA	NA	87604011	87647434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629216_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
15009	chr8	+	5525	34	NIC	ENSMUSG00000031644.20	novel	5109	35	NA	NA	3	0	intron_retention	TRUE	canonical	3	24	junction_17	14.9073046478596	106	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATCAGTTGTCCTTATT	NA	False	NA	NA	False	NA	NA	NA	61446236	61584380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61503061_61503194_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
15010	chr2	+	2390	10	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	-3	-78	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	841.246356365818	4	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACACTGGTCTAATTTTTG	NA	False	NA	NA	False	NA	NA	NA	34662103	34666465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562_34665704_34665769
15011	chr2	+	3719	21	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	415.063546339594	1	146	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7236	False	NA	NA	False	NA	NA	NA	29779839	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783519_29791088_29791260_29792192_29792354_29793332_29793456_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812229_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
15012	chr4	+	2910	3	Antisense	novelGene_ENSMUSG00000066149.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTCCTTCTACCATGTG	NA	False	NA	NA	False	NA	NA	NA	62312723	62324874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_62313265_62320966_62321155_62322693
15013	chr4	+	1969	1	Antisense	novelGene_ENSMUSG00000066149.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGCCCAAACTACACCTC	NA	False	NA	NA	False	NA	NA	NA	62324878	62326847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_62324900_62326800
15014	chr2	+	2478	15	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	428.374954964475	3	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867535	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868303_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
15016	chr4	+	2961	16	NNC	ENSMUSG00000028737.16	novel	3382	15	NA	NA	-23	-3	intron_retention	FALSE	non_canonical	0	0	junction_15	59.242102145912	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTATATTTTGATCGTG	NA	False	NA	NA	False	NA	NA	NA	139350396	139376995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468_139376547_139376741
15017	chr18	+	3614	4	NIC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	-2	0	intron_retention	FALSE	canonical	3	5	junction_1	107.263952731361	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	NA	False	NA	NA	NA	63110975	63132521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_63111096_63124871_63124951_63127382_63128164_63129887
15018	chr2	-	2304	5	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	18957	-3	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	227.911166905003	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75515876	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75515766
15019	chr11	+	3658	21	NNC	ENSMUSG00000009090.18	novel	4085	21	NA	NA	6	-188	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	90.332427732238	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCTGTTTGATAATAAAG	NA	False	NA	NA	False	NA	NA	NA	4936939	4992541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4937052_4959529_4959593_4962944_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990091_4990181_4990266_4990422_4991717
15020	chr9	+	4109	22	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	-1	-7	intron_retention	FALSE	canonical	3	72	junction_21	46.6520385236562	1	74	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACAGAGACTGACCTGGT	6620	False	NA	NA	False	NA	NA	NA	21232033	21266314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
15021	chr8	+	3641	10	NNC	ENSMUSG00000002342.18	novel	2093	11	NA	NA	-1	-5	intron_retention	FALSE	canonical	1	1	junction_3	68.3682837448932	1222	60	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAATGCTGCCTTACCA	7763	False	NA	NA	False	NA	NA	NA	70626951	70635495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70627057_70629494_70629576_70629890_70629989_70630127_70630259_70631516_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
15022	chr2	+	3137	19	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	4	-4	intron_retention	FALSE	canonical	0	0	junction_12	92.318440435508	1	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTGTTGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	130266288	130285650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281635_130281760_130281838_130282150_130282663_130282819_130282929_130283084_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215
15024	chr6	-	3257	10	NIC	ENSMUSG00000005362.15	novel	2084	11	NA	NA	7	1325	intron_retention	FALSE	canonical	2	10	junction_1	66.8909191275497	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAAAGAGTCATTGGTTT	NA	False	NA	NA	False	NA	NA	NA	106777015	106755836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_106758072_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
15026	chr3	+	531	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	104	434	0	-19	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	1	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACAGCTGTCCAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	137570351	137572249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
15027	chr6	+	2179	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	26	6	26	-6	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684552	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
15028	chr15	+	2129	4	Antisense	novelGene_ENSMUSG00000022403.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGCTGCCGCGAGGCAGAA	NA	False	NA	NA	False	NA	NA	NA	81247984	81283884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_81249779_81250546_81250622_81276462_81276524_81283685
15030	chr7	+	4011	15	FSM	ENSMUSG00000005686.18	ENSMUST00000170374.8	3489	15	-47	-475	-47	-11	multi-exon	FALSE	canonical	3	40	junction_1	9.21539306745812	131	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAATAGAACAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	110367365	110411601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_110367587_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
15033	chr17	-	3102	22	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-9	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	272.074444594417	1	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTGACACCATGTGCCT	NA	False	NA	NA	False	NA	NA	NA	36280662	36267720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269113_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274653_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
15034	chr18	-	3402	8	NNC	ENSMUSG00000056671.8	novel	868	7	NA	NA	-5	9205	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	124.950112493927	1403	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTCTTAGCTTGCACCA	NA	False	NA	NA	False	NA	NA	NA	42084287	41999459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42001380_42008030_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
15035	chrX	+	3447	21	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	0	-11	combination_of_known_splicesites	FALSE	canonical	1	1	junction_14	86.6114744130361	229	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGACCACCACACCTAGC	NA	False	NA	NA	False	NA	NA	NA	20570172	20586765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20570359_20573150_20573222_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
15036	chr3	+	3891	7	Antisense	novelGene_ENSMUSG00000015697.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	71	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCACGAAGCTGTAGGAA	9351	False	NA	NA	False	NA	NA	NA	95244629	95255395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_95247377_95247472_95247622_95248642_95248778_95248969_95249158_95252836_95252909_95253921_95254432_95255305
15037	chr18	+	3112	18	Intergenic	novelGene_4548	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.470588235294118	3	33	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTCCGCCCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	56659915	56695345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_56660080_56661348_56661424_56664560_56664638_56664783_56664880_56665051_56665168_56665557_56665667_56667261_56667351_56670278_56671208_56671280_56671815_56675295_56675395_56678036_56678114_56679974_56680016_56681513_56681651_56683366_56683490_56684229_56684313_56692293_56692359_56693846_56693899_56695099
15038	chr19	-	2647	20	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-195	-378	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	523.253067695915	1	102	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGGATGAATACAGGCGC	4232	False	NA	NA	False	NA	NA	NA	5345117	5324337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337650_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068
15039	chr2	-	3344	15	NNC	ENSMUSG00000045624.16	novel	3396	14	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.163550952693	3	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCGTTTGTATAGCATT	6990	False	NA	NA	False	NA	NA	NA	140012471	139961802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_139962203_139962241_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
15040	chr2	+	2340	12	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	433	junction_11	590.287953263994	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
15041	chr3	+	489	3	FSM	ENSMUSG00000027907.5	ENSMUST00000029515.5	511	3	22	0	22	0	multi-exon	FALSE	canonical	3	443	junction_1	9.5	5408	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAGAGTCAGTAGATT	NA	False	NA	NA	False	NA	NA	NA	93427816	93433594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_93427861_93431357_93431507_93433298
15042	chr1	+	321	2	Intergenic	novelGene_375	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACT	NA	False	NA	20	True	NA	NA	NA	60744446	60744863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_60744526_60744621
15043	chr11	+	1795	11	Antisense	novelGene_ENSMUSG00000075528.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCGCGCGCAGAAAAGCCGG	NA	False	NA	NA	False	NA	NA	NA	101297672	101308239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_101297850_101298955_101299051_101300477_101300533_101300938_101301032_101301179_101301245_101301584_101301716_101301906_101302020_101302113_101302823_101304761_101304923_101307928_101308061_101308175
15045	chr1	-	1946	11	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2348.55870908095	37	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287101	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281525_86284329_86284464_86284678_86285175_86285828_86285946_86286927
15047	chrX	+	3296	4	NNC	ENSMUSG00000096508.8	novel	3677	5	NA	NA	325	125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.8662454861639	1	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAAATAATCTATCCTC	NA	False	NA	NA	False	NA	NA	NA	134334908	134344704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134335036_134339225_134339580_134341313_134341466_134342041
15048	chr8	-	3636	8	NIC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	13	1	intron_retention	FALSE	canonical	3	422	junction_3	41.6408355304438	15	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTGGTACTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83500761	83490248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83499641_83500685
15050	chr10	+	2334	12	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	17	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	306.558691615421	1	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTAACCAACAGATCTGG	7007	False	NA	NA	False	NA	NA	NA	60113466	60138364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130793_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
15051	chr11	+	4307	21	FSM	ENSMUSG00000020536.13	ENSMUST00000108719.4	4268	21	-45	6	-45	-6	multi-exon	FALSE	canonical	3	223	junction_6	33.7192452465947	203	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACATCTGCACACATG	NA	False	NA	NA	False	NA	NA	NA	60590625	60605006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746
15052	chr2	+	2026	12	NNC	ENSMUSG00000068882.14	novel	2088	12	NA	NA	0	-5	intron_retention	FALSE	canonical	0	0	junction_4	677.261598444259	34	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATATTTCTCACTTTGG	NA	False	NA	NA	False	NA	NA	NA	69691966	69702185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697011_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
15053	chr3	+	1914	13	NIC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	29	junction_2	710.461640805157	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCGTTGTCATGTGTTT	3814	False	NA	NA	False	NA	NA	NA	88204432	88229072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88204574_88206648_88206711_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
15054	chr6	-	3220	23	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-33	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	149.136162755122	7	70	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCATCCTGTCCTGGCTGG	3460	False	NA	NA	False	NA	NA	NA	125168599	125144971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148892_125156232_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
15055	chr2	-	2352	13	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	8	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	167.693669131147	21	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	103315462	103284346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285167_103285422_103285498_103287250_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
15056	chr2	+	1452	2	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	75039	11	3458	-11	3prime_fragment	FALSE	canonical	3	372	junction_1	0	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACGGAAACTTAGCGTC	NA	False	NA	NA	False	NA	NA	NA	160562846	160564673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_160562997_160563371
15057	chrX	+	1073	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	31	-224	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	80.2507788124203	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	NA	NA	NA	163052599	163155783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_163052674_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
15058	chr17	-	3045	10	NIC	ENSMUSG00000079553.12	novel	2357	11	NA	NA	-22	2	intron_retention	FALSE	canonical	1	168	junction_4	139.548301297657	20	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	9671	False	NA	NA	False	NA	NA	NA	34109657	34094639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34105650_34105737_34105876_34109451
15059	chr4	-	2467	15	NIC	ENSMUSG00000028603.16	novel	2640	16	NA	NA	-10	-1	combination_of_known_splicesites	TRUE	canonical	0	0	junction_4	157.898976357334	22	15	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGGCTTTTACTGTG	NA	False	NA	NA	False	NA	NA	NA	107975711	107901036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
15063	chr10	-	2230	10	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	434.859875259964	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5227	False	NA	NA	False	NA	NA	NA	62322555	62291050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292269_62292613_62292640_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
15065	chr11	+	2903	11	NIC	ENSMUSG00000059248.14	novel	3616	12	NA	NA	65	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	251.64808761443	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTGGAGTTCTCTTTG	3763	False	NA	NA	False	NA	NA	NA	117090551	117253142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_117090600_117109700_117109758_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
15066	chr1	+	2132	7	NNC	ENSMUSG00000025903.15	novel	930	8	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	308.023808603599	2	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCGATTGCTTTATATAG	NA	False	NA	NA	False	NA	NA	NA	4878070	4916955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4915249
15067	chr7	+	2503	6	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	218	junction_1	214.949854617304	59	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
15069	chr12	-	2452	8	NIC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	15	0	intron_retention	FALSE	canonical	1	3	junction_6	683.685480857019	2	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860048	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108854301_108854475_108859994
15070	chr15	+	2224	15	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	515.418360882394	5	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756678	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773644_81788078_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
15072	chr2	-	3032	19	NNC	ENSMUSG00000039671.19	novel	6188	24	NA	NA	348	-17	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_8	177.634395304124	13	25	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGGAAGCAACAGAAACTG	NA	False	NA	NA	False	NA	NA	NA	165703577	165627455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165703460
15073	chr16	-	2483	18	NIC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	22	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	285.390596179242	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCGTGGCAGACGTTTT	NA	False	NA	NA	False	NA	NA	NA	3895669	3857843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886526_3886886_3895556
15074	chr3	+	3984	24	NNC	ENSMUSG00000034349.15	novel	4057	24	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	208.165994546286	14	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	68912397	68941956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_68912424_68913408_68913551_68914530_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
15076	chr17	+	3129	23	Antisense	novelGene_ENSMUSG00000077931.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCCAGTGGGCGGGCTC	NA	False	NA	NA	False	NA	NA	NA	36267712	36280672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36268482_36268571_36268646_36268734_36268796_36268961_36269137_36269219_36269250_36269960_36270032_36270120_36270200_36270334_36270618_36270765_36270881_36271000_36271072_36271465_36271620_36271704_36271844_36271928_36272122_36272592_36272716_36272877_36272953_36274025_36274129_36274212_36274284_36274459_36274570_36274644_36274691_36274813_36274939_36275145_36275233_36275968_36276009_36280537
15077	chr2	+	4481	1	ISM	ENSMUSG00000037885.19	ENSMUST00000166282.3	5445	3	27264	26	27264	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	167	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAAGCCATACGCTATT	NA	False	NA	NA	False	NA	NA	NA	129669700	129674181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_129669700_129674200
15078	chr2	-	2229	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	243	3	91	-3	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534742	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
15079	chr6	-	2178	12	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	224.222734598309	409	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTAGCCTCACAGTTC	NA	False	NA	NA	False	NA	NA	NA	95695779	95451130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95451988_95452033_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
15080	chr2	+	2148	10	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	200	-2	intron_retention	FALSE	canonical	0	0	junction_9	921.702423792349	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAGTATGTGTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	130116950	130121225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119545_130119768_130119891_130120075_130120211_130120332_130120405_130120816
15081	chr14	-	2516	17	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-10	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	194.076811066521	1021	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTTCTGCCTGCCTG	4849	False	NA	NA	False	NA	NA	NA	54754828	54744638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748456_54748567_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
15082	chrX	-	3533	23	Intergenic	novelGene_4085	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	158	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATCTTGTACTCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	150844965	150806059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150806145_150809230_150809447_150809533_150809764_150810688_150810947_150811034_150811176_150811958_150812044_150812186_150812394_150816693_150816875_150816971_150817161_150819107_150819239_150819333_150819473_150820363_150820480_150820583_150820693_150824321_150824462_150829652_150829802_150829890_150830045_150830853_150830963_150841772_150841931_150842352_150842507_150842621_150842774_150843969_150844040_150844286_150844400_150844718
15083	chr19	+	4289	16	NIC	ENSMUSG00000025026.16	novel	4054	15	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	70.764272215732	182	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGCATTTGGTATAAT	2523	False	NA	NA	False	NA	NA	NA	53131226	53235513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_53131521_53191844_53191907_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
15084	chr5	-	4170	11	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	684.139612944609	1	174	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGCAGCATTTATCTAT	NA	False	NA	NA	False	NA	NA	NA	92231576	92200029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202908_92203238_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213712_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
15085	chr18	+	4618	16	NIC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	-28	2	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	19.7033556081755	52	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATGTTAGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	74401332	74414307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
15086	chr13	+	5433	12	NIC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	-110	-41	combination_of_known_junctions	TRUE	canonical	2	12	junction_11	35.0958545737878	48	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAGATTTTACAAGGT	NA	False	NA	NA	False	NA	NA	NA	38009840	38133141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_38010029_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38130832_38131481_38132618
15087	chr10	-	2223	11	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	0	346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	665.52448489894	3	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCCACAAGCAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	93725646	93696443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722905_93725418
15089	chr8	+	1223	9	NNC	ENSMUSG00000031446.15	novel	3728	20	NA	NA	0	3849	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	122.585110739437	1	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGGAAGGCAGATGGAT	NA	False	NA	NA	False	NA	NA	NA	13155739	13178071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13155904_13156193_13156310_13165469_13165573_13171678_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709
15090	chr7	-	3266	8	NIC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	2548	junction_4	205.497802758997	4	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875293	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_113865780_113866355_113866436_113868955_113869086_113869567_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
15093	chr18	-	3239	22	FSM	ENSMUSG00000003778.15	ENSMUST00000003876.10	4468	22	11	1218	11	-3	multi-exon	FALSE	canonical	3	307	junction_21	99.9950565671548	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAACTCTGGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	34757643	34732885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
15094	chr8	-	1483	3	Antisense	novelGene_ENSMUSG00000031562.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTCACATCAGCCGAGTT	NA	False	NA	NA	False	NA	NA	NA	48594700	48590347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_48590407_48591813_48591914_48593376
15095	chr9	+	3058	6	NIC	ENSMUSG00000020257.14	novel	3747	9	NA	NA	3895	-33	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	87.230728530719	325	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCGTAAACAGGATTTT	NA	False	NA	NA	False	NA	NA	NA	106057770	106068305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_106057832_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
15096	chr19	+	3946	5	Antisense	novelGene_ENSMUSG00000010095.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGGCGGGGAAGTGACC	NA	False	NA	NA	False	NA	NA	NA	8685973	8691250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_8686508_8686591_8686774_8686912_8688006_8688676_8690272_8690708
15097	chr11	-	1937	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1334.5135424797	4	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676282_106677749_106677901_106679098
15099	chr1	+	2074	16	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	650.026960124647	68	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724116	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59727728_59727779_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
15100	chr11	+	3011	12	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCACCTCAAGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	106545184	106615232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106545991_106570376_106570436_106573704_106573788_106575034_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588180_106590416_106590707_106605821_106606015_106615170
15101	chr11	-	1926	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1768.29955984085	2	30	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675766_106675879_106675961_106676123_106676220_106676355_106677772_106677901_106679098
15102	chr13	-	4637	7	FSM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	-7	-996	-7	0	multi-exon	FALSE	canonical	3	175	junction_3	22.9249984853992	272	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCAACTGGTGCTGGA	NA	False	NA	NA	False	NA	NA	NA	13568216	13532204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
15103	chr16	+	1960	10	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1104.63154015544	8	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTGTTTTGTTTGGGTC	1379	False	NA	NA	False	NA	NA	NA	20354253	20362803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20361388_20361501_20362060
15105	chr7	+	3429	6	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	49	2927	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	105.201901123506	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTTACTGAAAATTCTG	NA	False	NA	NA	False	NA	NA	NA	42863529	42879193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135_42877517_42878439
15106	chr11	+	2846	10	NNC	ENSMUSG00000059248.14	novel	2924	10	NA	NA	-15	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	202.139360312766	10	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAAATACAAACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	117222530	117253126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117222595_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
15107	chr16	-	3881	5	NIC	ENSMUSG00000022544.15	novel	987	7	NA	NA	6	-642	intron_retention	FALSE	canonical	3	476	junction_1	7.46240577829965	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAGCGTGCCCACAGATA	NA	False	NA	NA	False	NA	NA	NA	5073814	5063384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
15108	chr8	+	5257	22	NIC	ENSMUSG00000025812.19	novel	3204	19	NA	NA	-3	-7	combination_of_known_junctions	FALSE	canonical	3	7	junction_15	38.8402157341671	78	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTCTTTGCTGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	128026089	128338760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_128026285_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
15109	chr7	-	4047	27	NNC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	-7648	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	63.1198376528762	1	89	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACCTTCCCTGTCTATAA	NA	False	NA	NA	False	NA	NA	NA	29969720	29939566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943964_29944114_29944312_29944711_29944927_29947036_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953541_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573
15112	chr8	+	3270	12	NIC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	-28	-383	intron_retention	FALSE	canonical	3	384	junction_4	48.5856149850043	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTTCCTGCTGTTGCC	2129	False	NA	NA	False	NA	NA	NA	70495434	70524614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70524302_70524455
15113	chr8	-	2077	13	NIC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	6	-3	intron_retention	FALSE	canonical	3	1149	junction_9	188.772110551909	58	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCATGCAGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	112737923	112720077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
15115	chr15	+	2281	11	NNC	ENSMUSG00000023010.16	novel	1148	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	561.48674071611	1823	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99290866	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355_99307237_99307302
15116	chr17	+	1924	10	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	12	-102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1480.0402396932	1	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTCCTGGGTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	13135347	13143852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141073_13142142_13142298_13142416_13142581_13143146
15117	chr11	-	3033	12	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	-3	-62	intron_retention	FALSE	canonical	3	937	junction_7	75.045881282857	8	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACCCTCTGGAATGT	4512	False	NA	NA	False	NA	NA	NA	6217749	6208980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6215757_6216315_6216407_6216511_6216683_6216810_6217580_6217659
15118	chr5	-	2987	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	-15	0	-15	0	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	451	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	NA	NA	NA	5609553	5587453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
15120	chr2	+	6636	11	NIC	ENSMUSG00000036792.13	novel	6037	11	NA	NA	10	-2	intron_retention	FALSE	canonical	0	0	junction_3	3.49857113690718	84	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATTTGTTCTTTCATTAA	6236	False	NA	NA	False	NA	NA	NA	48839544	49150568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_48840188_48908265_48908338_48976601_48976665_48989728_48989822_49008663_49008818_49059920_49060026_49121683_49121861_49135553_49136219_49140150_49140254_49141254_49141436_49146188
15122	chr16	+	3287	31	NNC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	117.206541341912	1	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACGTGTGTTCCAGG	NA	False	NA	NA	False	NA	NA	NA	29398195	29470694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405147_29405835_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
15123	chr11	+	2236	12	NNC	ENSMUSG00000059552.14	novel	1822	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	860.977754773534	87	18	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471228	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69471879_69472292_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
15125	chr2	-	5563	31	NIC	ENSMUSG00000033526.17	novel	5533	30	NA	NA	1	0	combination_of_known_junctions	TRUE	canonical	3	47	junction_6	18.7459328922303	141	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGGGGTGTGACTCCTTT	NA	False	NA	NA	False	NA	NA	NA	121185813	121141041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_121142964_121147135_121147250_121152135_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
15126	chr19	-	2259	19	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-26	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	476.214564800779	2152	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTGGTTTAATGTCAACT	NA	False	NA	NA	False	NA	NA	NA	27407251	27367452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27376757_27376875_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
15128	chr5	+	4673	18	FSM	ENSMUSG00000029227.16	ENSMUST00000113536.8	4769	18	46	50	14	-40	multi-exon	FALSE	canonical	3	259	junction_9	161.909389842069	360	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTGATAATCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	74696177	74759411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
15129	chr3	-	5763	16	FSM	ENSMUSG00000039701.12	ENSMUST00000090379.7	6185	16	111	311	72	-311	multi-exon	FALSE	canonical	3	36	junction_5	6.61177400971597	98	7	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATAGCTGGTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	122778048	122725452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_122728245_122729636_122729734_122741009_122741087_122742772_122743506_122744819_122744964_122746205_122746356_122746828_122746992_122750347_122750498_122751233_122751381_122752680_122752787_122754803_122754887_122754967_122755082_122756532_122756668_122757903_122757997_122762237_122762899_122777930
15130	chr11	+	2034	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	8	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4245.84773160791	3	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3043	False	NA	NA	False	NA	NA	NA	75623746	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647854_75650131_75650255_75655445
15131	chr12	-	2203	6	NNC	ENSMUSG00000076432.14	novel	2197	6	NA	NA	53	-2	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_5	1362.85039531124	153	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTTGGCTGGTATTAGA	NA	False	NA	NA	False	NA	NA	NA	21467536	21440073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467394
15133	chr3	+	3651	12	ISM	ENSMUSG00000028060.15	ENSMUST00000199684.5	3636	13	516	-75	506	5	3prime_fragment	FALSE	canonical	3	104	junction_10	87.1512412015756	34	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGTGCATTGTTGTTTT	471	False	NA	NA	False	NA	NA	NA	88593649	88620236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617164_88617250_88618067
15135	chr3	+	732	1	Antisense	novelGene_ENSMUSG00000047676.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGACGCTGACATCAGC	NA	False	NA	NA	False	NA	NA	NA	149778214	149778946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_149778200_149778900
15137	chr4	-	3618	13	NNC	ENSMUSG00000037443.14	novel	3893	14	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	119.830783468467	2	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	133914363	133857168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883617_133900119_133900192_133914253
15139	chr15	+	4505	16	FSM	ENSMUSG00000039458.16	ENSMUST00000038172.16	6840	16	75	2260	-1	-4	multi-exon	TRUE	canonical	3	174	junction_5	33.0552399611452	184	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCATGGTTGGTGTGCA	47	False	NA	NA	False	NA	NA	NA	12205188	12272322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236235_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
15140	chr18	+	2937	19	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-29	0	intron_retention	FALSE	non_canonical	0	0	junction_7	346.97278151335	1	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6220	False	NA	NA	False	NA	NA	NA	34758030	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761238_34761437_34761609_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
15141	chr6	+	2899	10	NIC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	45	intron_retention	FALSE	canonical	3	404	junction_1	57.0232787639193	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGTGTTGTTAAGTCAAG	NA	False	NA	NA	False	NA	NA	NA	72575584	72584470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72575780_72577955_72578139_72578458_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
15142	chr16	+	3497	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	20	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	343.056675132464	1	124	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCCGTGACTACTGTGT	NA	False	NA	NA	False	NA	NA	NA	13598596	13632694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624483_13624621_13626853_13626955_13628367_13628521_13629385_13629474_13630953
15143	chr11	+	1752	1	NIC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	8167	-435	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGGCACTGCCTCCAC	NA	False	NA	NA	False	NA	NA	NA	4841430	4843182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4841400_4843200
15144	chr11	-	4258	4	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	269	-4	intron_retention	FALSE	canonical	3	286	junction_2	8.04155872120988	16	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATCTGCGGTGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	77784653	77771444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_77773590_77773954_77774138_77774604_77774819_77782937
15146	chr17	-	2901	21	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-851	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	279.216094629232	1	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGCTGACACCATGTGC	NA	False	NA	-29	True	NA	NA	NA	36276015	36267722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274154_36274285_36274460_36274572_36274649_36274688_36274808_36274901_36275186_36275233_36275968
15147	chr17	+	5216	23	NIC	ENSMUSG00000035842.11	novel	4480	25	NA	NA	6	42	intron_retention	FALSE	canonical	3	152	junction_9	16.0850014835956	6	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACATGTCATTGGGCAA	NA	False	NA	NA	False	NA	NA	NA	66430571	66458426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66457048_66457325_66457405_66457568_66457724_66457797
15148	chr10	+	3927	8	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	31359	0	27762	0	3prime_fragment	FALSE	canonical	3	377	junction_5	82.7020716370589	1	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGATTGCATGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	127960010	127965172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
15149	chr6	-	4315	22	NIC	ENSMUSG00000030138.9	novel	4345	23	NA	NA	38	0	intron_retention	FALSE	canonical	2	285	junction_21	61.0015426740733	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	8393	False	NA	NA	False	NA	NA	NA	118396327	118360341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385112_118388442_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
15150	chr9	+	3059	22	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTGCAAGCCCAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	61824572	61854037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826253_61826893_61826976_61827156_61827239_61831185_61831503_61831915_61832093_61832250_61832426_61832811_61832968_61833639_61833785_61834386_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61842662_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
15152	chr13	+	3450	7	NNC	ENSMUSG00000042348.11	novel	1966	6	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	186.027477062455	311	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTTTCCTGACTGACTTT	NA	False	NA	NA	False	NA	NA	NA	113931039	114293995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_113931233_114037538_114037690_114058782_114058928_114070599_114070660_114104117_114104327_114291239_114291977_114292040
15155	chr10	-	3587	26	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	335.836865159261	10	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTCTTTTCCGGAGTTA	NA	False	NA	NA	False	NA	NA	NA	121462204	121425524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447459_121447578_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462034
15156	chr17	-	2949	18	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	3	-1060	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.51740764298	2	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTGAATAAAAAGATAACAG	8678	False	NA	NA	False	NA	NA	NA	24470380	24442231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24442970_24443090_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
15157	chr6	+	3143	23	FSM	ENSMUSG00000030088.16	ENSMUST00000130418.8	4175	23	-2	1034	-2	0	multi-exon	FALSE	canonical	3	47	junction_1	39.2549675753126	444	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	90527768	90576151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_90527953_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
15158	chr6	+	2508	15	ISM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	293	0	169	0	3prime_fragment	FALSE	canonical	0	0	junction_6	213.201351605778	2	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5730	False	NA	NA	False	NA	NA	NA	125109164	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
15159	chr6	+	3333	19	FSM	ENSMUSG00000029833.18	ENSMUST00000031859.14	4042	19	589	120	589	-120	multi-exon	FALSE	canonical	3	87	junction_9	112.54974208964	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCAGAGTTCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	37848334	37943111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922725_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
15160	chr7	+	4809	4	Antisense	novelGene_ENSMUSG00000087598.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	123	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCTCTGGAGCGGGAAT	NA	False	NA	NA	False	NA	NA	NA	23894943	23907553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_23899467_23902793_23902924_23906484_23906544_23907456
15161	chr8	+	566	3	NNC	ENSMUSG00000096917.3	novel	298	2	NA	NA	10	2092	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	2	2	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAACATTGAAAATCCGT	NA	False	NA	NA	False	NA	NA	NA	57958858	57964003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57958943_57959561_57959836_57963795
15162	chr15	-	1767	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-29	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1814.60686926948	13	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCACTTATTCAGAG	NA	False	NA	NA	False	NA	NA	NA	31601915	31590958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598169_31601746
15163	chr11	+	2140	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-8	-791	intron_retention	FALSE	non_canonical	0	0	junction_12	301.394717123914	1184	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCAATTGGATTCTGTG	NA	False	NA	NA	False	NA	NA	NA	3914000	3929213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927054_3927094_3927201_3927625_3928033_3928826
15164	chr15	+	3844	12	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	-2	127	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	464.430300618114	3	99	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAACACAGAAATCTGCCT	NA	False	NA	NA	False	NA	NA	NA	80832710	80853447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80850166_80850292_80850384_80851312_80851403_80851789_80851963_80852862
15165	chr4	-	1297	8	FSM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	17	2	17	-2	multi-exon	FALSE	canonical	3	2323	junction_4	508.87928082108	4611	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGTGTCCCTCGTCTAG	4477	False	NA	NA	False	NA	NA	NA	133273290	133259854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
15166	chr11	-	2056	10	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	996.443056793562	13	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACTTGCTGTTTTCTTA	9743	False	NA	NA	False	NA	NA	NA	106890290	106879459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882736_106883471_106883518_106887334_106887473_106888063_106888162_106890184
15167	chr14	+	5981	16	ISM	ENSMUSG00000042323.18	ENSMUST00000022471.12	5871	28	28664	-1572	26696	0	3prime_fragment	FALSE	canonical	3	58	junction_13	42.26088288503	184	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATCAGCCAGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	30776130	30843549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30838969_30839041_30839156_30839374_30840685
15168	chr5	-	3593	13	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	18370	1	465	-1	3prime_fragment	FALSE	canonical	3	530	junction_12	237.294165190241	3	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110939593	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466
15169	chr13	+	3497	9	NIC	ENSMUSG00000021431.16	novel	1785	9	NA	NA	0	-6	intron_retention	FALSE	canonical	1	67	junction_6	66.5450974903486	225	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAAGTTGTTTGAAGT	NA	False	NA	NA	False	NA	NA	NA	38388920	38411633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38398580_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
15170	chr2	+	3482	5	NIC	ENSMUSG00000005506.17	novel	4441	13	NA	NA	-4318	0	combination_of_known_splicesites	FALSE	canonical	3	55	junction_2	216.294937527442	448	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTCTGCGTTGT	NA	False	NA	NA	False	NA	NA	NA	90838515	90849842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90838646_90839549_90839661_90843043_90843188_90843582_90843748_90846910
15171	chr1	-	1698	12	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	2369	5771	1938	5	3prime_fragment	FALSE	canonical	3	5903	junction_8	870.888621888894	10	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTAATACTTCCTAGAGG	NA	False	NA	-60	True	NA	NA	NA	86284753	86278211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
15173	chr1	+	2918	8	NNC	ENSMUSG00000026174.10	novel	3268	8	NA	NA	291	-1	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_3	355.427882406314	9	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGTTTTGTTTTTAAA	1153	False	NA	NA	False	NA	NA	NA	74545509	74570000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74545621_74556228_74556409_74558059_74558176_74561532_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
15174	chr1	+	1916	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	526.72718803214	38	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724123	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743812_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
15175	chrX	-	2757	10	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	6	intron_retention	FALSE	canonical	3	168	junction_8	400.45030209059	9	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	100128978	100122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127701_100127881_100128877
15177	chr15	-	2428	9	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-95	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	850.572298146959	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAGTATGCTGAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	81283890	81247905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249617_81259060_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
15178	chr1	-	3767	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-57	-10	intron_retention	FALSE	canonical	3	19	junction_8	18.3196445107431	44	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAAATACACTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	130390245	130366773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_130368117_130375355_130375377_130376064_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
15179	chr8	-	3327	10	NIC	ENSMUSG00000033931.10	novel	3424	11	NA	NA	15	-16	combination_of_known_splicesites	TRUE	canonical	2	5	junction_5	53.233239407139	7	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGAAATTTTCTAAAGATG	NA	False	NA	NA	False	NA	NA	NA	127697784	127673937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
15180	chr1	+	4868	12	NIC	ENSMUSG00000026554.16	novel	2859	14	NA	NA	-9	31	intron_retention	FALSE	canonical	3	161	junction_1	123.217069763048	228	173	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCTGCAAGGAAGAGCAAG	NA	False	NA	NA	False	NA	NA	NA	171975735	172023105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172014480_172014919_172016637_172020084_172020205_172021351_172021469_172022122
15181	chr2	-	4229	2	NIC	ENSMUSG00000047030.16	novel	4012	3	NA	NA	-6	-25	intron_retention	FALSE	canonical	3	52	junction_1	0	16	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGAGTTGAAATGTTGAGA	4618	False	NA	NA	False	NA	NA	NA	167334771	167323377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_167327514_167334678
15182	chrX	-	3519	19	FSM	ENSMUSG00000025059.17	ENSMUST00000026039.15	4340	19	163	658	-3	-658	multi-exon	FALSE	canonical	3	19	junction_1	33.6576812358314	260	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCATTTCTCATTTCCAG	NA	False	NA	NA	False	NA	NA	NA	84820262	84746200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_84748003_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
15185	chr6	+	2431	15	Antisense	novelGene_ENSMUSG00000038429.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	39	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCGCATGTCGCACTTGG	NA	False	NA	NA	False	NA	NA	NA	124791994	124801245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124792618_124793938_124794032_124794280_124794435_124794629_124794778_124794852_124794997_124795508_124795627_124796330_124796424_124796948_124797128_124797376_124797529_124798039_124798165_124798282_124798371_124798847_124798918_124799485_124799685_124800417_124800515_124801097
15186	chr2	+	2157	13	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	83	junction_12	945.36081809481	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
15187	chr4	-	1755	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	43	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2509	False	NA	NA	False	NA	NA	NA	129229146	129203309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203674_129203891_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
15188	chr6	+	1726	3	NIC	ENSMUSG00000015733.14	novel	3678	5	NA	NA	-20	-2247	intron_retention	FALSE	canonical	3	1829	junction_2	48	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGCTATGAAGATCAGG	4	True	NA	NA	False	NA	NA	NA	17637013	17654149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_17637160_17648518_17650054_17654104
15189	chr3	-	3940	17	NIC	ENSMUSG00000027889.18	novel	3650	18	NA	NA	-6	0	intron_retention	FALSE	canonical	3	199	junction_8	20.0187412191676	3	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993973	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
15190	chr7	-	4420	4	FSM	ENSMUSG00000040167.17	ENSMUST00000046306.15	4430	4	10	0	10	0	multi-exon	TRUE	canonical	3	63	junction_1	6.97614984548545	124	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTTGTTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	131012240	130990380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_130994310_130995483_130995667_130998397_130998581_131012115
15191	chr10	-	3701	21	NNC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.777927823149	1	79	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	78020977	78006742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78007680_78007731_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78020904
15192	chrX	+	3970	1	Genic_Genomic	ENSMUSG00000025860.16	novel	NA	NA	NA	NA	11965	6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTCTTTGTATTTGATT	NA	False	NA	NA	False	NA	NA	NA	41194569	41198539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_41194600_41198500
15193	chrX	+	3784	5	Antisense	novelGene_ENSMUSG00000057421.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTAACTTTCCTTTACT	NA	False	NA	NA	False	NA	NA	NA	94978926	94992974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_94979253_94980969_94981131_94983907_94984555_94990016_94990168_94990475
15196	chr5	-	6503	21	FSM	ENSMUSG00000042249.12	ENSMUST00000065167.9	6533	21	24	6	13	-6	multi-exon	FALSE	canonical	3	54	junction_7	10.5322124931089	70	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCAGTGGCTTGAGGCT	563	False	NA	NA	False	NA	NA	NA	113163356	113058353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
15198	chr15	+	2876	10	Genic_Genomic	ENSMUSG00000059883.17	novel	3437	12	NA	NA	34345	8031	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGCTCCGCCTGTGCGTC	NA	False	NA	NA	False	NA	NA	NA	94475897	94487727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_94476234_94476285_94477872_94478824_94478949_94479099_94479248_94480629_94480761_94482263_94482369_94483330_94483423_94484236_94484418_94486108_94486189_94487634
15199	chr9	+	4274	7	Intergenic	novelGene_1073	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGAAACTGGTTCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	58125830	58156950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129149_58137076_58137914_58140437_58140531_58141635_58142213_58154255_58154725_58156825
15200	chr7	+	3442	9	Antisense	novelGene_ENSMUSG00000030741.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	62	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAGCCCTACCGGAGAA	NA	False	NA	NA	False	NA	NA	NA	125969240	125976598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_125969584_125969904_125970079_125970349_125970449_125970712_125970783_125971133_125971320_125971583_125972058_125972935_125974379_125975848_125975911_125976007
15201	chr10	+	2668	5	NIC	ENSMUSG00000006728.13	novel	2038	7	NA	NA	27	-14	intron_retention	FALSE	canonical	3	4641	junction_1	500.667804037767	44	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATGGTCTTTATTTTTC	NA	False	NA	NA	False	NA	NA	NA	126899429	126903152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
15202	chr2	+	3917	10	NIC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	23	-304	intron_retention	FALSE	canonical	3	416	junction_5	47.1579955385073	3	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTTTGTTGGATCCCA	NA	False	NA	NA	False	NA	NA	NA	25162512	25175623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25162690_25162926_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25175185_25175262
15203	chr11	+	3020	17	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	22	-5	intron_retention	FALSE	canonical	3	862	junction_14	84.3900912429889	55	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGACCAATTGTTAATC	NA	False	NA	NA	False	NA	NA	NA	115455281	115474727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
15205	chr3	+	2435	9	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	-13	57	intron_retention	FALSE	canonical	0	0	junction_7	320.580625584267	669	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCAAGCCATTGGACTC	NA	False	NA	NA	False	NA	NA	NA	30847471	30874238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30869815_30869906_30872648
15206	chr11	-	3162	19	Antisense	novelGene_ENSMUSG00000025579.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	48	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACCACGGAGTTCGAAC	NA	False	NA	NA	False	NA	NA	NA	119176272	119161000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_119161503_119163693_119163842_119164798_119164963_119165035_119165137_119165465_119165593_119165686_119165798_119165882_119166017_119167715_119167777_119168324_119168441_119168519_119168594_119169083_119169209_119169697_119169832_119171233_119171388_119171936_119172083_119173991_119174141_119174484_119174636_119174881_119175049_119175269_119175424_119175828
15207	chr13	+	3320	14	Antisense	novelGene_ENSMUSG00000034617.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGCACGCGCGCGGCAC	NA	False	NA	NA	False	NA	NA	NA	68708902	68730243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_68710552_68712438_68712621_68712717_68712812_68713228_68713344_68714183_68714374_68715060_68715104_68716890_68717071_68718121_68718211_68719187_68719343_68720696_68720819_68725705_68725824_68727657_68727816_68728669_68728835_68730183
15209	chr19	+	1101	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	-10	combination_of_known_junctions	FALSE	canonical	3	67	junction_7	297.230701644362	35	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGTACATATGGATTTTTA	NA	False	NA	NA	False	NA	NA	NA	36061115	36082167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077640_36078208_36078239_36078633_36078672_36079220_36079301_36081735
15210	chr14	+	1776	9	NIC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	17	1291	combination_of_known_splicesites	FALSE	canonical	1	13	junction_8	2437.25131744246	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTGCAGTTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	63359979	63380603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379680
15211	chr10	-	2813	21	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	-17	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	726.782310943243	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCCGAGCCCTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	127147564	127132098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144128_127144234_127144390_127144552_127144776_127144853_127145872_127146008_127146088_127146162_127146312_127146404_127147389
15212	chr11	+	2006	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	25	181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1424.68199711353	4	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCATATTAACTTGTCATT	NA	False	NA	NA	False	NA	NA	NA	22940543	22953332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946319_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
15213	chr1	-	3397	3	NNC	ENSMUSG00000044783.17	novel	2217	5	NA	NA	-6	-642	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	75	2	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATGTCGGTCTGCCCTGC	8661	False	NA	NA	False	NA	NA	NA	88205285	88190834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88194001_88194051_88194093_88205095
15214	chr7	-	3346	10	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-3	0	intron_retention	FALSE	canonical	3	390	junction_5	38.4730144322767	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976586	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125972063_125972941_125973009_125973093_125974376_125975845_125975912_125976008
15216	chr10	+	2346	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	17	93	0	-81	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACAATTCCTCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
15217	chr17	+	5068	6	FSM	ENSMUSG00000034998.19	ENSMUST00000112238.9	5085	6	11	6	11	-6	multi-exon	FALSE	canonical	3	257	junction_4	10.9288608738514	263	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTTGTGCTTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	88748149	88797955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_88748313_88770140_88770692_88783283_88783379_88786703_88786769_88791828_88791898_88793830
15219	chr10	-	2390	9	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	64	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAGGGTAGACAAACCGG	NA	False	NA	NA	False	NA	NA	NA	128198190	128173658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173666_128187066_128187132_128188540_128188673_128188889_128189078_128194200_128194401_128195036_128195167_128195300_128195403_128195810_128196021_128196834
15220	chr13	-	587	2	Intergenic	novelGene_1406	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCTTAGGAAACAGTAAGT	NA	False	NA	NA	False	NA	NA	NA	62902174	62859879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_62860154_62901861
15221	chr2	-	2661	10	Antisense	novelGene_ENSMUSG00000026662.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCGCGGCGCTCCCACAA	NA	False	NA	NA	False	NA	NA	NA	4913018	4886635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_4886670_4889138_4889416_4893992_4894097_4896396_4896505_4897994_4898151_4901499_4901591_4904274_4904372_4910279_4910493_4911388_4912633_4912681
15222	chr10	+	3171	8	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	13	-2357	intron_retention	FALSE	non_canonical	0	0	junction_6	515.296783912149	13	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAGACGCTCACAGTGGGG	NA	False	NA	NA	False	NA	NA	NA	128173615	128195991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189473_128193563_128195405_128195812
15223	chr5	-	2899	5	NNC	ENSMUSG00000072762.10	novel	2001	4	NA	NA	-43	475	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.0998417719758	136	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	7614	False	NA	NA	False	NA	NA	NA	109899795	109883380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109885666_109886183_109886275_109886815_109886877_109887064_109887192_109899460
15224	chrX	-	1940	14	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	3	-1741	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	32.2479300743914	1	53	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGACCATGGCCTGCAC	NA	False	NA	NA	False	NA	NA	NA	49724135	49653742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49656484_49656571_49658153_49658236_49658411_49658549_49659014_49659169_49661929_49662019_49662100_49662328_49666125_49666295_49666747_49666902_49670279_49670434_49684337_49684493_49715313_49715387_49716083_49716128_49723821
15225	chr4	+	3693	24	NIC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	52	-4	intron_retention	FALSE	canonical	1	3	junction_19	60.7506913774283	4	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAGAAAAACTAT	3585	False	NA	NA	False	NA	NA	NA	108477188	108491298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483234_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487504_108487601_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
15226	chr10	+	4334	28	NNC	ENSMUSG00000039994.16	novel	4341	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	105.499985372417	3	129	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	6606	False	NA	NA	False	NA	NA	NA	128067948	128088808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083124_128083213_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
15227	chr19	+	2818	13	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	-16	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	224.133702656844	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTAATTTGGACCAAAAG	NA	False	NA	NA	False	NA	NA	NA	10160386	10174219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234_10173283_10173770
15228	chr1	+	3645	22	NIC	ENSMUSG00000026288.15	novel	3942	23	NA	NA	13	9	intron_retention	FALSE	canonical	3	151	junction_19	87.4057704472822	1	99	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGCCATGTGCTGTGTT	9383	False	NA	NA	False	NA	NA	NA	87603973	87647425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
15230	chr5	+	3699	4	NNC	ENSMUSG00000046079.17	novel	3929	3	NA	NA	-19	-5	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	217.435558780578	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAATCGTAGTGGTTCACA	4949	False	NA	NA	False	NA	NA	NA	105848712	105963071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_105848952_105880095_105880241_105959589_105960029_105960195
15233	chr2	-	5227	12	FSM	ENSMUSG00000026918.17	ENSMUST00000077737.13	5272	12	36	9	3	-9	multi-exon	TRUE	canonical	3	192	junction_7	30.2258714644446	285	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAGATTGTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	27365662	27335599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
15234	chrX	+	3770	14	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-16	-1	intron_retention	FALSE	non_canonical	1	66	junction_10	93.7091686230524	460	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTTGCTTGTTTATTTT	1107	False	NA	NA	False	NA	NA	NA	20664036	20726757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
15235	chr17	+	2434	18	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	47	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	678.451483324278	1	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACATATTGCAATAAAATA	546	False	NA	NA	False	NA	NA	NA	56610446	56630450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629427_56630392
15236	chr5	+	4094	2	Genic_Genomic	ENSMUSG00000061118.9	novel	1661	1	NA	NA	39	3796	multi-exon	FALSE	canonical	1	4	junction_1	0	479	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATGGAATGTAAAGAT	3171	False	NA	NA	False	NA	NA	NA	135093094	135098512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_135094257_135095580
15238	chr1	-	2666	16	NIC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-17	-8	combination_of_known_splicesites	FALSE	canonical	2	17	junction_13	853.804255474677	2	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCTGTGATTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	128287418	128259337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128281196_128281308_128283249_128283397_128287195
15239	chr16	-	3169	21	NNC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	535.069049282427	1	94	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	1526	False	NA	NA	False	NA	NA	NA	91440015	91418291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418633_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438606_91439911
15240	chr5	+	943	1	Intergenic	novelGene_722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGCTGGGATTTCATGCC	967	False	NA	NA	False	NA	NA	NA	65542920	65543863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_65542900_65543900
15241	chr5	-	4672	17	NNC	ENSMUSG00000045078.13	novel	3704	17	NA	NA	-9279	-16	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_16	55.0368839393184	9	84	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTGTGAACGCTTCTCT	4985	False	NA	NA	False	NA	NA	NA	143108028	142976663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084261_143107889
15244	chr7	-	3377	21	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-27	-8	intron_retention	FALSE	canonical	3	117	junction_16	20.2598124374339	45	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGATTTCTGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	140697746	140681145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
15245	chr12	+	4420	7	NIC	ENSMUSG00000032705.10	novel	3310	9	NA	NA	14	-5	intron_retention	FALSE	canonical	3	173	junction_5	23.1426734266664	5	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGCTCAGTGATTGTAA	2802	False	NA	NA	False	NA	NA	NA	80510007	80544891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80538005_80539315_80539673_80543554
15246	chr18	+	2859	21	NNC	ENSMUSG00000024231.16	novel	397	2	NA	NA	2346	16	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_1	205.853734481549	3	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGCATAATGCCTTTT	2391	False	NA	NA	False	NA	NA	NA	3385656	3435401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3385830_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
15248	chr9	-	2998	18	NNC	ENSMUSG00000031996.18	novel	3634	17	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	349.469771378393	11	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGCACCTTGTGTTCCT	8719	False	NA	NA	False	NA	NA	NA	31123107	31060857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31061174_31061824_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
15249	chr4	+	2355	1	FSM	ENSMUSG00002075525.1	ENSMUST00020182136.1	137	1	-788	-1430	-788	1430	mono-exon	FALSE	NA	NA	NA	NA	NA	214	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATTTATTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	132035986	132038341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132036000_132038300
15251	chr14	-	3261	9	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	0	intron_retention	FALSE	canonical	3	300	junction_2	36.3421243187572	2	40	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607998	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
15252	chr2	+	1790	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	32	-717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1162.02890096016	23	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCTTTATACTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	121244395	121268451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264105_121264512_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
15253	chr11	-	2660	10	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9042	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	579.374204755271	4	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	382	False	NA	NA	False	NA	NA	NA	106615262	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
15254	chr3	+	3906	4	NIC	ENSMUSG00000005687.15	novel	737	6	NA	NA	0	3	intron_retention	FALSE	canonical	3	3803	junction_3	91.8924492122297	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGTGGCTATAGTGA	5036	False	NA	NA	False	NA	NA	NA	103079077	103086146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_103079357_103080590_103080662_103081655_103084736_103085670
15255	chr5	+	5703	1	NIC	ENSMUSG00000097908.8	novel	3967	4	NA	NA	11992	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	77	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGATCCAGACTCAGC	6555	False	NA	NA	False	NA	NA	NA	136960246	136965949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_136960200_136965900
15256	chr11	-	3316	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	-524	-5	-524	5	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	348	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGGAGCTTGTGTCTTG	6291	False	NA	NA	False	NA	NA	NA	3402887	3365976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
15257	chr11	+	1827	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	142	515	9	114	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTTGGCATTTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	22940660	22953265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
15259	chr5	+	2731	12	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-9	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	415.229200871276	1304	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478619	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368_111534658_111534696
15260	chr8	-	1787	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-11	-4	-11	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	10637	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760028	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
15261	chr2	+	2434	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-13	1	intron_retention	FALSE	canonical	0	0	junction_9	945.55660327661	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116336	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119545_130119768_130119891_130120075_130120215_130120332_130120452_130120816
15262	chr4	+	4340	22	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	46	0	intron_retention	FALSE	non_canonical	0	0	junction_7	73.7621045833317	4	117	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAAAAACTATCAGT	3579	False	NA	NA	False	NA	NA	NA	108477182	108491302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482731_108482851_108483351_108483497_108483565_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108485146_108485226_108485400_108485759_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487504_108487601_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
15263	chr17	-	1609	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	1	996	1	-996	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	90	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGATTTCTGAGTTCGAGGC	NA	False	NA	NA	False	NA	NA	NA	47093581	47085828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
15264	chr15	-	4231	11	NIC	ENSMUSG00000005360.15	novel	4163	10	NA	NA	34	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_7	19.3225257148231	234	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTGTATGTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	8740214	8663607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717194_8717297_8717771_8717910_8738045_8738324_8739822
15266	chr17	-	1862	2	Genic_Genomic	ENSMUSG00000066878.6	novel	1988	1	NA	NA	7	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACTTTGAG	NA	False	NA	NA	False	NA	NA	NA	90217870	90215892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_90216610_90216725
15268	chr9	+	5691	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	42	-25	15	25	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	392	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGCAACTATAACCCTTA	NA	False	NA	NA	False	NA	NA	NA	57615864	57659807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
15269	chr15	-	3806	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	-32	0	-32	0	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	472	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTCAGGTACTTCACATG	4639	False	NA	NA	False	NA	NA	NA	83479390	83459290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
15270	chr15	+	2178	14	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	723.01562751654	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793900_81794613_81794659_81797880_81798014_81798438_81798561_81798828
15271	chr8	-	2874	7	Antisense	novelGene_ENSMUSG00000000303.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	153	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGACCCCTCAAAGGGTTC	6332	False	NA	NA	False	NA	NA	NA	107396873	107387504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107387673_107388516_107388662_107390377_107390602_107390825_107391049_107392023_107392155_107392816_107392967_107395040
15272	chr11	+	670	4	FSM	ENSMUSG00000034285.16	ENSMUST00000135405.8	656	4	-7	-7	-1	7	multi-exon	FALSE	canonical	3	1226	junction_1	23.4568161143456	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTTCCTCCCTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	4823997	4834411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021
15274	chr10	-	1843	12	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	794.380469660799	5	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	8753	False	NA	NA	False	NA	NA	NA	128401795	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394233_128394656_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396581_128398763_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
15275	chr4	+	2818	13	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	3	10	junction_6	56.4121736270934	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603909	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
15277	chr16	-	3145	19	NIC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	2	17	junction_13	71.3702958926364	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1983	False	NA	NA	False	NA	NA	NA	15964679	15707087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
15278	chr19	+	3662	8	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-513	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	140.83975551915	7	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTAGAGCTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	53975882	54021557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016195_54017988_54018038_54018291_54018410_54019498
15280	chr15	-	2372	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	2349	343	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	760.317715022988	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGACCTCTGTCCTCA	2341	False	NA	-15	True	NA	NA	NA	11397338	11383747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388445_11388527_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266
15281	chr1	-	1606	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	64	505	64	-505	multi-exon	FALSE	canonical	3	1712	junction_8	135.919976456737	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACCTGCTATTGATTAG	NA	False	NA	NA	False	NA	NA	NA	128345032	128291948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
15282	chr14	+	2292	16	Antisense	novelGene_ENSMUSG00000021929.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCGAGTCGAGCGGGAG	4810	False	NA	NA	False	NA	NA	NA	61604387	61677280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_61605179_61605576_61605670_61607829_61607993_61608148_61608222_61608318_61608427_61610408_61610536_61611732_61611865_61620683_61620729_61622036_61622205_61622549_61622641_61624873_61624959_61628612_61628708_61628846_61628915_61629195_61629295_61640446_61640490_61677169
15283	chr9	-	4066	23	NNC	ENSMUSG00000032480.18	novel	4623	23	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	202.391369699712	2	125	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGAGTGCTGCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	109945857	109913393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917772_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944224_109944558_109944651_109945745
15284	chr19	+	1676	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	96	3	-19	-3	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	1876	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTACTGTTTGTCTTG	4156	False	NA	NA	False	NA	NA	NA	41900457	41907096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
15286	chr11	-	1740	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	39	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.228520068743	12	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGACGGCTGAAAATTC	5240	False	NA	NA	False	NA	NA	NA	88846252	88814849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815343_88820096_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
15289	chrX	-	5454	19	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	-12	-118	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	33.2517984290389	1	259	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTCATGAACAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	49724150	49652119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49656416_49656571_49658153_49659169_49661891_49662019_49662100_49662229_49666747_49666902_49669457_49669827_49670279_49670434_49673555_49673725_49680801_49680932_49684337_49684493_49687010_49687128_49689030_49689168_49689620_49689776_49692247_49692403_49715313_49715387_49716083_49716187_49719767_49719873_49723821
15290	chr11	-	3027	13	NIC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_12	150.01222172432	1	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	100288613	100261444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100288461
15291	chr12	+	2212	18	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	-25	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	203.492958313169	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGTGCCTGTTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	21336333	21364837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347849_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
15292	chr4	-	4340	28	FSM	ENSMUSG00000066151.13	ENSMUST00000084527.10	4264	28	-128	52	-50	-52	multi-exon	FALSE	canonical	3	62	junction_18	17.8933741789013	142	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAAACTTGACTCAGGC	6866	False	NA	NA	False	NA	NA	NA	62278835	62218630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239195_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
15293	chr5	-	2854	11	FSM	ENSMUSG00000039753.17	ENSMUST00000047857.16	2858	11	-4	8	-4	0	multi-exon	FALSE	canonical	3	499	junction_3	32.2155242080584	610	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCAATATCTTTTGTGT	8824	False	NA	NA	False	NA	NA	NA	43939496	43901965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
15294	chr10	+	4365	24	NNC	ENSMUSG00000040033.17	novel	4394	24	NA	NA	-40	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	24.1260082113001	87	11	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAACAAAGATACTGTGA	2321	False	NA	NA	False	NA	NA	NA	128106387	128128711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114534_128114687_128116950_128117110_128117218_128117312_128117517_128117589_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119689_128119795_128119849_128119966_128120062_128120815_128120953_128121140_128121324_128121529_128121588_128126372_128126537_128126608_128126900_128127096
15296	chr5	+	2796	11	Antisense	novelGene_ENSMUSG00000001467.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCGGGCCCTTCACACG	NA	False	NA	NA	False	NA	NA	NA	4131633	4154434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_4131862_4132200_4133307_4136462_4136636_4137782_4137874_4141844_4142037_4142380_4142507_4149122_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
15297	chr4	-	2328	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.665829357099	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726959	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697946_147698200_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
15298	chr10	+	3993	26	FSM	ENSMUSG00000020064.10	ENSMUST00000219577.2	3914	26	-96	17	-2	-13	multi-exon	FALSE	canonical	3	20	junction_16	90.360929610092	425	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTGACATTCAGATACC	NA	False	NA	NA	False	NA	NA	NA	63079605	63153640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63139623_63139648_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
15299	chr5	-	3378	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	391	212	-22	-212	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	10	105	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAATATGGATTAAATTAA	NA	False	NA	NA	False	NA	NA	NA	77099034	77061334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
15300	chr16	-	2668	23	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	1	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	88.6328670638999	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTAGAACTCTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	13485999	13355833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472350_13482543_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
15301	chr4	-	2953	26	Intergenic	novelGene_2160	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	198	28	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCTGCCCGAGGCGGGC	NA	False	NA	NA	False	NA	NA	NA	148666850	148642888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148643034_148644002_148644141_148645468_148645593_148646762_148646867_148647167_148647335_148647476_148647593_148648043_148648146_148648296_148648372_148648564_148648679_148649054_148649199_148649658_148649851_148650734_148650891_148652821_148652973_148653102_148653159_148654843_148654954_148657373_148657484_148657564_148657646_148657733_148657842_148660265_148660361_148660605_148660682_148662874_148662961_148663835_148663914_148664814_148664985_148665552_148665619_148666212_148666289_148666737
15302	chr8	+	2444	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	-8	127	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	218.752360343173	1	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCCGAAAGATTTGAAG	NA	False	NA	NA	False	NA	NA	NA	69246617	69280280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271586_69271649_69271939_69272020_69273306_69273470_69274808_69274903_69279928
15303	chr4	+	2449	12	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	75	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGGCCTGGCCGAGCA	256	False	NA	NA	False	NA	NA	NA	137469055	137523656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475131_137476876_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882_137486043_137523551
15304	chr7	+	2988	22	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	3901	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	163.486017764625	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTTCTAGTTTCTGG	280	False	NA	NA	False	NA	NA	NA	97134120	97190602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155356_97156998_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179960_97180023_97183577_97183738_97184347_97184492_97187106_97187228_97190218
15305	chr8	-	3273	6	NIC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	5	-3	intron_retention	FALSE	canonical	3	257	junction_2	4.66476151587624	469	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACGTTTCCCTTGGCTTCT	NA	False	NA	NA	False	NA	NA	NA	112660426	112638645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
15306	chr6	+	1920	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	291	0	291	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	22	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684817	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
15307	chr4	-	2353	9	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	553	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	527.600405136311	10	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323227	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141303525_141304098_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
15308	chr17	-	3205	6	NNC	ENSMUSG00000045409.17	novel	3204	7	NA	NA	-87	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	22.7912263820971	2	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTGATCTCTTGAGTTG	NA	False	NA	NA	False	NA	NA	NA	36580199	36569771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574850_36578016_36578113_36579500
15309	chr17	-	504	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	222	3	-4	3	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	3104	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTCTGTGGTATCTCA	NA	False	NA	NA	False	NA	NA	NA	36568739	36566561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
15310	chr1	+	4006	12	ISM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	72	1176	-11	-1176	intron_retention	FALSE	canonical	3	280	junction_10	29.4396707671134	4	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTGTGTGTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	93682698	93717156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232
15311	chr4	-	1221	5	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	283	-2	intron_retention	FALSE	canonical	3	28	junction_1	108.437770172574	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCCTGTCTCCATGTAA	NA	False	NA	NA	False	NA	NA	NA	147949711	147945249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947594_147949645
15312	chr4	-	2331	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.867196102678	1	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726988	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697981_147698232_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
15313	chr9	-	3094	18	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	85.3287961957018	18	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	NA	False	NA	NA	NA	53159400	53009934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140471_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
15314	chr14	+	3351	11	NIC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	-33	0	intron_retention	FALSE	canonical	3	218	junction_1	49.7723819000055	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	99283856	99311976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
15315	chr7	-	3540	24	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	31	2	combination_of_known_splicesites	FALSE	canonical	3	238	junction_2	256.034939723406	506	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	6959	False	NA	NA	False	NA	NA	NA	126101555	126090884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126091388_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
15316	chr7	+	3498	6	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-5	15511	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	109.59817516729	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCAAGCAGACAGATAGAC	9993	False	NA	NA	False	NA	NA	NA	42863457	42891777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42870265_42870410_42872998_42873126_42873324_42873386_42875135_42876337_42889926
15319	SIRV2	-	1901	11	NNC	SIRV2A	novel	1971	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1035.72471728737	67	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCTCTATAGCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	5911	1034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV2_-_1646_1796_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
15320	chr5	-	2348	17	NNC	ENSMUSG00000036693.13	novel	2702	18	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	206.716555638391	4	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	34817461	34795879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34795996_34796234_34796391_34796528_34796584_34798752_34798802_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
15321	chr8	-	1385	1	FSM	ENSMUSG00000052825.7	ENSMUST00000182415.2	992	1	-103	-290	-103	290	mono-exon	FALSE	NA	NA	NA	NA	NA	7	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAATATTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	52650194	52648809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_52648800_52650200
15322	chr9	-	1817	6	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-26	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1798.56687393046	8	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAACAAAATGTGAGTAGT	NA	False	NA	NA	False	NA	NA	NA	110775188	110768680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769830_110771405_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
15323	chr1	+	1930	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-16	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	502.164625620413	1	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724113	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749722_59750429
15324	chr1	+	3161	26	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	273.161947569569	1	72	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCCTGCTTGCCGTT	3073	False	NA	NA	False	NA	NA	NA	171910404	171949889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932811_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944792_171949395
15327	chr4	+	1963	6	Antisense	novelGene_ENSMUSG00000028568.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	116	32	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTGCCTCAGCTGAGACA	NA	False	NA	NA	False	NA	NA	NA	108672590	108690751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_108674069_108675394_108675442_108676332_108676528_108683287_108683410_108687713_108687780_108690696
15328	chr1	-	2507	13	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	306.365919104735	8	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624059	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598800_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
15329	chr8	-	4196	17	NIC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	24	0	intron_retention	FALSE	canonical	3	7	junction_7	189.65293136411	25	95	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3386	False	NA	NA	False	NA	NA	NA	105261216	105237659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105256749_105257024_105257129_105261143
15330	chr13	+	2906	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	51	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	73.4347783183599	39	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAATATTGCGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	97619259	97633509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97629663_97630239_97630912_97632984_97633275
15331	chr9	+	2800	16	Intergenic	novelGene_1036	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	14	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGACGCGAAACCAGCGT	NA	False	NA	NA	False	NA	NA	NA	53009934	53159369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010566_53028454_53028589_53060801_53060855_53068465_53068633_53071197_53071320_53115359_53115829_53118763_53118857_53120988_53121075_53136850_53136934_53140422_53140471_53145127_53145318_53146562_53146683_53147698_53147857_53149345_53149477_53151774_53151838_53159117
15332	chr7	+	3285	23	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	38.1524779044289	50	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGCCTGTGTGTCCTCT	503	False	NA	NA	False	NA	NA	NA	110628161	110655584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651578_110655277
15333	chr5	+	4096	23	NNC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	262.186357292696	1	142	14	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGTCTTATCTCTG	NA	False	NA	NA	False	NA	NA	NA	139186396	139235593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220344_139220484_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224585_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
15334	SIRV3	+	2330	5	NIC	SIRV3A	novel	1083	8	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	759	junction_2	939.050950428144	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTAGGTTAACGTCTCGTA	NA	False	NA	NA	False	NA	NA	NA	1943	8935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV3_+_2006_4003_4081_6057_7989_8127_8208_8755
15335	chr6	-	2257	8	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	71	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2062.12773016373	16	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCGGGCTGATTGCTGG	NA	False	NA	NA	False	NA	NA	NA	125471683	125437230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439899_125440055_125440723_125441352_125441451_125449371_125449475_125471536
15337	chr4	+	2328	6	NNC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	0	243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9381.99984225112	25	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGATTCATTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	116542795	116556712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116542858_116544603_116544947_116547802_116549127_116550079_116550203_116550913_116551045_116556367
15339	chr4	+	2879	9	NIC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	-1	578	intron_retention	FALSE	canonical	3	755	junction_6	70.3099166192081	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCCTCTCCCTCGCTC	9117	False	NA	NA	False	NA	NA	NA	152018194	152059319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653
15340	chr17	-	2024	16	Antisense	novelGene_ENSMUSG00000007564.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGTTTCTATCAGGCAGCA	NA	False	NA	NA	False	NA	NA	NA	21186071	21165756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21165844_21171602_21171694_21174874_21174975_21176047_21176141_21176231_21176287_21176970_21177113_21177216_21177373_21178979_21179095_21179199_21179270_21179647_21179784_21180725_21180902_21181214_21181276_21181845_21182002_21182835_21182978_21185503_21185590_21185713
15341	chr9	-	3846	19	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	15	-139	intron_retention	FALSE	canonical	3	27	junction_4	152.245953138051	75	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTTGTTGTTGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	114469233	114415172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114425672_114425740_114426546_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
15342	chr5	+	3586	14	NNC	ENSMUSG00000042328.14	novel	3345	14	NA	NA	29	-2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	24.7453300836086	225	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACCAAAGTGAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	112490994	112526265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_112491030_112491607_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
15343	chr2	+	3144	11	NIC	ENSMUSG00000096764.2	novel	4532	28	NA	NA	110670	7921	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	202.566532280138	12	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTGTGCATAGTTT	NA	False	NA	NA	False	NA	NA	NA	112207328	112244585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_112207631_112207722_112207826_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
15344	chr7	+	4207	29	NNC	ENSMUSG00000034867.17	novel	4284	29	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_15	51.1070679843716	13	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCGATTGTGTCGTGC	NA	False	NA	NA	False	NA	NA	NA	35285699	35338641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315308_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
15345	chr17	-	2256	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-375	0	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_13	654.668894134085	791	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45907258	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45907005
15346	chr2	+	3438	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	0	-294	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	214.187353086549	190	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGCCTACACAGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	104389523	104401480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389595_104390068_104390321_104398205_104398836_104398995
15347	chr2	+	3209	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	-2	123	-2	-123	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	783	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTTTTTTAAATGTTCT	NA	False	NA	NA	False	NA	NA	NA	62494626	62524330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
15348	chr10	+	4286	8	FSM	ENSMUSG00000078429.10	ENSMUST00000105256.10	4817	8	529	2	217	-2	multi-exon	FALSE	canonical	3	267	junction_2	56.6705480863575	459	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGGACTGGGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	126815114	126835836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229
15350	chr4	+	2205	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	18	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	43.2730863239497	3	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147637751	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147647008_147661520_147661587_147665698_147665826_147667290_147668562_147669146
15351	chr4	-	4742	12	NIC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	7	-11	intron_retention	FALSE	canonical	3	684	junction_3	52.9799587868644	44	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTTTCTGATTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	155845518	155825108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155825810_155830485_155831939_155833127_155833666_155834588_155834714_155834929_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
15352	chr8	-	2392	3	NNC	ENSMUSG00000050052.13	novel	2463	3	NA	NA	45	-2	intron_retention	FALSE	canonical	2	5	junction_2	145.5	47	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTTTAGTGTGTATATT	4909	False	NA	NA	False	NA	NA	NA	14024648	14002009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_14004136_14005719_14005818_14024480
15353	chrX	-	2479	8	NNC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	0	-4	intron_retention	FALSE	canonical	0	0	junction_6	704.19234385419	2	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGACTTGTTGGCATGAG	NA	False	NA	NA	False	NA	NA	NA	72140623	72129904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72131048_72133005_72133105_72134464_72135498_72136875_72136911_72137788_72137859_72138429_72138585_72140586
15354	chrX	-	2442	15	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	19	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	420.519212597077	11	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTGTGAGATGAGGG	NA	False	NA	NA	False	NA	NA	NA	95000473	94978930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984209_94984313_94984555_94990016_94990165_94990472_94990680_94991003_94991055_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995798_94996827_94996910_94998747_94998818_94999480_94999607_95000263
15355	chr7	-	1959	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	621.456675883364	25	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGGTGTGTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	99002321	98994639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998276_98998362_98998672_99002259
15356	chr5	-	2447	13	NNC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-29	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	217.620512590151	2044	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92583107	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578987_92579888_92579951_92582858
15357	chr17	-	4557	2	NIC	ENSMUSG00000100572.2	novel	764	3	NA	NA	40	3614	intron_retention	FALSE	canonical	3	57	junction_1	0	59	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCAGTGAGCACCTTAAT	NA	False	NA	NA	False	NA	NA	NA	69584163	69578742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_69583191_69584054
15358	chr5	-	2431	6	NNC	ENSMUSG00000072762.10	novel	2001	4	NA	NA	-138	472	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	63.8667362560512	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTATAGCCATATGCCTT	7808	False	NA	NA	False	NA	NA	NA	109899601	109883383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109883631_109883705_109883870_109883974_109885666_109886815_109886877_109887064_109887192_109899460
15359	chr5	+	314	1	NIC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	2	-9792	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGTGAGCAGAACGCCCG	NA	False	NA	NA	False	NA	NA	NA	45827262	45827576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45827300_45827600
15360	chr17	-	4561	15	Antisense	novelGene_ENSMUSG00000058392.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	109	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCGTATGGGCTGCGGC	2895	False	NA	NA	False	NA	NA	NA	32281831	32255385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_32255579_32264901_32264980_32266641_32266713_32267531_32267612_32268398_32268460_32268920_32269053_32270121_32270195_32270660_32270821_32271708_32271812_32272838_32272944_32274882_32274971_32275527_32276228_32277495_32277636_32278244_32278310_32279319
15362	chr10	+	2565	15	Antisense	novelGene_ENSMUSG00000020076.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCGCCGGCCAGGACCG	NA	False	NA	NA	False	NA	NA	NA	62451809	62486976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62452295_62457166_62457302_62460545_62460709_62460925_62460997_62461940_62462061_62463298_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476638_62478550_62478736_62479077_62479154_62482693_62482983_62483313_62483423_62486803
15363	chr2	+	2879	15	NNC	ENSMUSG00000070544.7	novel	3856	21	NA	NA	30	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.3616673762	23	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAACTTAGCGTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	160487929	160564678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_160488183_160511994_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535667_160554663_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
15364	chr1	-	4127	8	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	14	-651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.874710326919	2	120	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCATTACCAATGTCGGT	8681	False	NA	NA	False	NA	NA	NA	88205265	88190843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88194373_88195665_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205002_88205095
15365	chr18	+	2215	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26641	-2801	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	367.069346752686	5	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGTTGGTATTTCTTAC	6444	False	NA	-78	True	NA	NA	NA	77126262	77238012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185254_77185333_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756
15366	chr1	-	2396	10	Intergenic	novelGene_325	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGCTCCGCCCCCTAGGC	4428	False	NA	NA	False	NA	NA	NA	4967975	4928007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_4928198_4937690_4937753_4948246_4948348_4956962_4957068_4959718_4959824_4960960_4961020_4962137_4962291_4963637_4963785_4965151_4965227_4966576
15367	chr6	+	2295	9	NIC	ENSMUSG00000015733.14	novel	2537	10	NA	NA	-9	-147	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	596.144015737808	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCTAATTTCCTCTT	-13	True	NA	NA	False	NA	NA	NA	17637024	17666824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_17637160_17648518_17648583_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
15369	chr7	+	2988	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	170	1386	-24	-8	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	370	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGACCAGGGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	27291146	27338865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
15370	chrX	+	3641	24	ISM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	2	9623	2	-4944	5prime_fragment	FALSE	canonical	3	214	junction_1	232.737810569768	2	96	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGGAAATTTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	143101020	143147823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_143101118_143102894_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860
15372	chr4	-	5183	25	Intergenic	novelGene_1951	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	89	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGAGCTTTCGCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	126487691	126450809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_126450926_126452996_126453108_126453709_126454144_126455548_126455711_126457697_126457775_126458722_126458797_126459480_126459592_126459763_126460373_126466069_126466261_126466925_126467100_126468431_126468609_126468886_126468949_126469632_126469834_126470132_126470289_126471404_126471634_126472113_126472226_126474750_126474827_126475222_126475323_126479630_126479796_126479897_126480017_126481347_126481476_126484329_126484435_126484975_126485057_126485384_126485545_126486438
15375	chr13	+	3532	5	NIC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	-277	0	intron_retention	FALSE	canonical	3	858	junction_3	39.2897887497502	2	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	NA	NA	NA	54246452	54262361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
15376	chr11	-	3994	10	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	-27	1	intron_retention	FALSE	canonical	3	23	junction_1	28.0994705806636	7	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTGTTAATTTTGAC	1364	False	NA	NA	False	NA	NA	NA	61157980	61135677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61137148_61138754_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
15378	chr11	+	2703	12	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3955	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2137.53558570736	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378391_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
15379	chr7	-	1588	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	-3	313	3	-310	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCCTCAGGATGAGATTT	8631	False	NA	NA	False	NA	NA	NA	45480216	45474963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
15380	chr13	+	5726	17	ISM	ENSMUSG00000033499.15	ENSMUST00000188211.8	5610	18	28257	-446	-14077	-17	3prime_fragment	FALSE	canonical	0	0	junction_11	76.960115481982	174	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTGAAGAATGCATTT	844	False	NA	NA	False	NA	NA	NA	9172173	9224470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_9172263_9173938_9173999_9186814_9186963_9187190_9187338_9193789_9193869_9195417_9195555_9197436_9197541_9199861_9199973_9200900_9200955_9201050_9201261_9208158_9208266_9208586_9208839_9214710_9214757_9216352_9216518_9218713_9218839_9218933_9219043_9220687
15381	chr12	+	2241	9	ISM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	-2	59	-2	-59	intron_retention	FALSE	canonical	3	5890	junction_1	365.159468588725	2	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTTGAACTTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	24758237	24764086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859
15382	chr10	+	2659	18	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4951	10656	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCGCGCGCAGGTCGGG	NA	False	NA	NA	False	NA	NA	NA	86526703	86541326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_86526995_86527494_86527611_86528001_86528131_86528234_86528325_86529247_86529378_86529777_86530010_86530274_86530480_86531336_86531405_86531521_86531576_86531660_86531830_86532584_86532698_86534180_86534305_86534449_86534560_86537560_86537893_86538794_86538890_86539323_86539466_86540157_86540260_86541169
15383	chr6	+	4065	30	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	123.679431049326	1	97	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGTTTGTTCTTACTTA	NA	False	NA	NA	False	NA	NA	NA	116185059	116239628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196916_116196962_116197497_116197610_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203438_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
15384	chr7	-	2669	15	NIC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	28	-1	intron_retention	FALSE	canonical	3	502	junction_2	199.036198123018	31	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTGGTTTTTTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102801	143067316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
15385	chrX	-	3227	8	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	120	-63	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	112.850090195546	38	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCTTTTCTGCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	12539787	12521180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_12523275_12524100_12524264_12528888_12529069_12530738_12530889_12532471_12532634_12535765_12535886_12539264_12539400_12539564
15386	chrX	+	1887	12	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-1	33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1183.2515503497	3	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAAGTTTGTTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	161543456	161561785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543606_161544570_161544716_161551847_161551994_161552759_161553008_161554019_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
15387	chrX	-	3121	11	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	461.790093007635	1	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231317	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23101884_23102052_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181377_23181441_23227732_23227824_23231194
15389	chr19	+	2921	21	NIC	ENSMUSG00000025001.12	novel	5868	22	NA	NA	45	-2779	combination_of_known_splicesites	FALSE	canonical	2	19	junction_2	415.351835797075	6	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGATCTGGTCACATT	NA	False	NA	NA	False	NA	NA	NA	38919403	38956716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38919520_38919834_38919957_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
15390	chr6	-	2978	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	5	1	5	-1	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	913	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCTGTAGTGTGTGAC	9717	False	NA	NA	False	NA	NA	NA	83752790	83745867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
15391	chr1	+	2528	21	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	143.268419409164	66	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	45834660	45862779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851290_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
15392	chr11	+	3345	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	305	4	14	-4	multi-exon	FALSE	canonical	3	284	junction_4	19.7585424563656	1137	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTTTGGTTTTGTG	349	False	NA	NA	False	NA	NA	NA	115824412	115857547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
15393	chr8	-	2132	14	NIC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	32	-1	combination_of_known_splicesites	FALSE	canonical	3	27	junction_8	929.481773282244	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTACTTGGCTTCACTG	NA	False	NA	NA	False	NA	NA	NA	26337690	26306904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
15395	chr13	-	2402	9	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	-6	-6813	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.416072243844	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTGTGTGGTTTTTAAT	5900	False	NA	NA	False	NA	NA	NA	38178139	38162189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38163020_38163083_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
15397	chr4	+	3560	2	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14299	1997	multi-exon	FALSE	canonical	3	59	junction_1	0	1	157	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGTCATTACCCAAATCT	NA	False	NA	NA	False	NA	NA	NA	145159010	145179455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036
15399	chr12	-	3013	7	NNC	ENSMUSG00000054302.16	novel	2658	7	NA	NA	2	360	at_least_one_novel_splicesite	TRUE	non_canonical	2	22	junction_1	141.534153710921	1108	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATGTCCTTTCATTA	NA	False	NA	NA	False	NA	NA	NA	54742664	54718079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_54718634_54718849_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
15400	chr10	+	6419	21	FSM	ENSMUSG00000019951.11	ENSMUST00000020112.7	6448	21	26	3	26	-3	multi-exon	FALSE	canonical	3	116	junction_11	11.4144645078076	91	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATATACTTTGTCCGATTG	NA	False	NA	NA	False	NA	NA	NA	89580878	89655730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
15401	chr4	+	368	3	FSM	ENSMUSG00000028647.14	ENSMUST00000147340.2	210	3	-4	-154	-4	154	multi-exon	FALSE	canonical	3	327	junction_1	8.5	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAATAGAGCTGCTTCGC	NA	False	NA	NA	False	NA	NA	NA	123798829	123803670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_123798881_123799026_123799100_123803426
15402	chr11	-	4517	12	Antisense	novelGene_ENSMUSG00000020623.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	434	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTCCTGCGAAAGGCGC	NA	False	NA	NA	False	NA	NA	NA	110406896	110289927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_110290250_110373362_110373432_110380970_110381017_110381584_110381700_110383336_110383457_110383719_110383839_110385120_110385175_110387166_110387293_110388722_110388800_110390207_110390348_110397530_110397577_110403613
15403	chr7	-	3178	11	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-2	0	intron_retention	FALSE	canonical	3	376	junction_6	42.5305772356783	29	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976595	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125974376_125975845_125975912_125976008
15404	chr19	-	2361	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	-23	3	-23	1	multi-exon	FALSE	canonical	3	832	junction_1	0	1608	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCAGAATGTGTCTGAAT	2007	False	NA	NA	False	NA	NA	NA	10181455	10176504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10178462_10181051
15406	chr9	+	2946	5	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	20477	-7	intron_retention	FALSE	canonical	3	1100	junction_1	111.848111293843	1	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTAATGAGTTTGGGTTG	NA	False	NA	NA	False	NA	NA	NA	59467299	59472385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59468361_59469225_59469310_59469578_59470334_59470506_59471271_59472103
15407	chr18	+	2953	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	166	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	444.270836752638	2	71	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTGTAGAATTTTCTG	6432	False	NA	-90	True	NA	NA	NA	77126250	77241198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214713_77217681_77217813_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
15408	chr6	+	1846	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	22	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2053.24139404558	21	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684548	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684556_122688496_122688763_122689587_122689675_122690100
15409	chr2	+	2824	2	NIC	ENSMUSG00000026969.4	novel	254	2	NA	NA	175	2377	intron_retention	FALSE	non_canonical	0	0	junction_1	0	56	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCGACGCTCTGCCAAC	NA	False	NA	NA	False	NA	NA	NA	25111544	25114669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25114245_25114545
15410	chr19	-	3381	7	NNC	ENSMUSG00000040451.19	novel	4036	10	NA	NA	-3461	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	60.6538447988987	185	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTGGCTATTATATTGT	4115	False	NA	NA	False	NA	NA	NA	32219687	32100129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219462
15411	chr7	+	3694	17	NNC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-11	-2	intron_retention	FALSE	non_canonical	0	0	junction_8	89.5117834421815	6	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGAGTGTGGCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	130247948	130366512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130248161_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341586_130342572_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
15413	chr1	-	3147	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	-1	3	-1	-3	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	592	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGGCTCAACTTGTG	NA	False	NA	NA	False	NA	NA	NA	134289718	134273837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
15414	chr10	-	2701	17	NNC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_12	100.760545353824	4	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8115	False	NA	NA	False	NA	NA	NA	62486988	62451793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62477815_62477881_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
15415	chr3	-	2439	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	0	494	0	0	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	1443	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTATGATATTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	95763197	95737929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
15417	chr16	+	3545	18	FSM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	32	5	32	-5	multi-exon	FALSE	canonical	3	873	junction_12	92.1558406284578	1	132	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTGACTACTGTGTTGAA	NA	False	NA	NA	False	NA	NA	NA	13598608	13632698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
15418	chr2	-	2635	6	ISM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	9570	11	-128	-11	3prime_fragment	FALSE	canonical	3	853	junction_1	102.496048704328	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAATTGAACATAGTTGC	NA	False	NA	NA	False	NA	NA	NA	35081562	35070227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523
15421	chr10	-	2736	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	134	3	48	-3	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	439	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTTTTAAGTATTCCC	NA	False	NA	NA	False	NA	NA	NA	22607212	22579780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
15422	chr3	-	1360	5	NIC	ENSMUSG00000027944.14	novel	1280	6	NA	NA	0	-17	intron_retention	FALSE	canonical	3	1706	junction_3	115.226949972652	359	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCTTTATTTATGCTAA	7207	False	NA	NA	False	NA	NA	NA	89905987	89902780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
15423	chr3	+	2677	17	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-812	26456	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGGAAAAAACAGATGG	NA	False	NA	NA	False	NA	NA	NA	89907609	89955208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908299_89909585_89909784_89910551_89910623_89915565_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928682_89952195_89952238_89955075
15424	chr8	+	2441	17	NIC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	54	3	combination_of_known_junctions	FALSE	canonical	3	68	junction_1	298.113122142837	48	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGACATTTTAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	107620336	107649723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_107620605_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
15425	chr12	+	1994	9	NNC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	-7	0	intron_retention	FALSE	canonical	3	18	junction_6	845.261608911703	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992270	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995241_80995868_80995943_80996267_80996379_80996493
15426	chrX	-	2603	8	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	39	0	intron_retention	FALSE	canonical	3	1120	junction_5	130.531566281564	75	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72830464	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
15427	chr19	+	3778	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	6	5	6	-5	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	676	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAACACGAGTTCTTTGCA	NA	False	NA	NA	False	NA	NA	NA	57441349	57479432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
15428	chr6	-	2703	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	272.873673314048	3	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3054	False	NA	NA	False	NA	NA	NA	71885728	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871998_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880469_71882077_71882128_71884636_71884674_71884777_71884831_71885617
15429	chr15	-	2669	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	23	125	23	121	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	2	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTCTTTACTGTGGAAT	400	False	NA	NA	False	NA	NA	NA	36609194	36596029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
15430	chr2	-	3608	22	NNC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	20	-4	intron_retention	FALSE	non_canonical	0	0	junction_5	100.586984727641	3	59	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTAGCTTCAGTACTGTC	NA	False	NA	NA	False	NA	NA	NA	11782339	11747389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_11747845_11748436_11748569_11751574_11751644_11751870_11751978_11753174_11753303_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
15432	chr7	+	3135	22	NIC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-35	3	combination_of_known_splicesites	FALSE	canonical	3	28	junction_20	102.131723224906	48	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	898	False	NA	NA	False	NA	NA	NA	97130127	97190605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97187106_97187228_97190218
15433	chr19	+	3586	5	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-3	0	intron_retention	FALSE	canonical	3	251	junction_1	154.5289212413	2	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3607	False	NA	NA	False	NA	NA	NA	4198649	4204034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4198736_4199340_4199544_4199861_4201499_4201578_4201725_4202520
15435	chr3	+	2596	8	NNC	ENSMUSG00000027601.14	novel	2953	8	NA	NA	-11548	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	404.476633365607	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCTATTTGTATATT	NA	False	NA	NA	False	NA	NA	NA	19254187	19274975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201_19273291_19273464
15436	chr18	+	3413	10	NNC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	112.80738527614	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	NA	False	NA	NA	NA	63110956	63132521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_63111096_63113536_63113605_63115689_63115775_63117096_63117146_63119249_63119360_63119481_63119532_63124882_63124951_63127382_63127463_63128033_63128164_63129887
15437	chr14	-	3787	12	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6158	-3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_10	46.0637359383175	179	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACTTGGCTGTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	47814264	47778353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47813988_47814069_47814201
15438	chr19	-	3164	26	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	0	-158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	226.352730047596	19	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTATAGATGTAGAATAT	NA	False	NA	NA	False	NA	NA	NA	37340010	37247986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253971_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268106_37268150_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
15439	chrUn_JH584304v1	+	2287	9	Intergenic	novelGene_4617	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTGAAAAAAACTAATGAAC	NA	False	NA	NA	False	NA	NA	NA	52196	61455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_52372_53539_54478_54718_54868_55111_55247_55506_55704_56986_57150_58561_58836_59591_59776_61383
15440	chr6	-	2108	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	131	317	131	-317	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAGCACATAGTAGGTAT	8616	False	NA	NA	False	NA	NA	NA	145021779	144945200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
15441	chr2	-	4416	8	Antisense	novelGene_ENSMUSG00000039515.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCGGCCATCTTGGTGCG	NA	False	NA	NA	False	NA	NA	NA	30337816	30306088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30306343_30316408_30316507_30318325_30318413_30321970_30322094_30325570_30325691_30327578_30329775_30333299_30333408_30336386
15442	chr2	-	570	1	Intergenic	novelGene_2588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAACAAGAAAA	9578	False	NA	NA	False	NA	NA	NA	27417448	27416878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_27416900_27417400
15443	chr11	-	2897	18	FSM	ENSMUSG00000020400.18	ENSMUST00000018482.13	2810	18	-98	11	-93	-9	multi-exon	FALSE	canonical	3	7	junction_17	76.4117873477302	774	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGATCAACATTTTGTG	6747	False	NA	NA	False	NA	NA	NA	54853836	54801623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54853658
15444	chr3	+	3201	10	NIC	ENSMUSG00000034544.18	novel	3224	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	104.560455665079	476	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGACTGCTTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	66893004	67265729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_66893116_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
15445	chr19	-	4139	31	NNC	ENSMUSG00000035049.5	novel	4340	34	NA	NA	5	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	72.5293886795017	27	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGAGTGGCTTGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	41884607	41851285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41851752_41853610_41853679_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
15446	chr5	-	4590	27	NIC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	50	6	intron_retention	FALSE	canonical	3	9	junction_9	73.9789371111445	2	152	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAAAGCACTTCTTACCT	NA	False	NA	NA	False	NA	NA	NA	108777509	108717270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108738969_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
15447	chr5	-	2714	7	ISM	ENSMUSG00000029328.16	ENSMUST00000149384.8	1477	8	55	-700	29	1	intron_retention	FALSE	canonical	3	230	junction_1	320.073125325379	281	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTCCTGCGTCAGGTA	NA	False	NA	NA	False	NA	NA	NA	100186699	100182584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671
15448	chr14	-	2768	15	NNC	ENSMUSG00000022031.7	novel	2851	15	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.551930200837	9	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3464	False	NA	NA	False	NA	NA	NA	65830504	65767897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65769050_65784582_65784665_65785377_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
15449	chr17	+	3412	14	NNC	ENSMUSG00000023921.10	novel	3674	13	NA	NA	41	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	94.047577031852	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACGATGTTCCTGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	41245616	41272875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458_41271802_41272018
15452	chr1	+	4007	5	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	307	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	96.3872398193869	381	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGTCTTGTGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	152969532	152995007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_152969599_152969782_152969860_152987887_152987990_152988125_152988194_152991313
15453	chr6	+	3110	23	NNC	ENSMUSG00000030088.16	novel	653	5	NA	NA	-2607	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	58.7374217236661	3	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	90525163	90576151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90525250_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575433_90575868
15455	chr17	+	2942	8	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	5232	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	960.993045059672	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	88292362	88298320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88292440_88292545_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
15456	chr13	+	2070	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	17	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	564.769198818317	1	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAAACTCTGGAAACCAC	NA	False	NA	NA	False	NA	NA	NA	3588164	3615802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615653_3615714
15457	chr15	+	3361	12	NIC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	7	1	intron_retention	FALSE	canonical	3	1269	junction_11	97.5659132997612	20	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGCTAGTCATTTATT	202	False	NA	NA	False	NA	NA	NA	38662194	38692688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38690904_38691855
15458	chr6	-	2383	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	833.564967807282	8	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAATAAAAGTTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	148847890	148822565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148822728_148822933_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
15459	chr6	+	3274	10	NIC	ENSMUSG00000033706.14	novel	2486	13	NA	NA	2	-8	intron_retention	FALSE	canonical	3	423	junction_8	63.4807251780869	28	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCCTTTGCAACAATGCC	NA	False	NA	NA	False	NA	NA	NA	85408972	85423409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85419638_85421224_85421320_85421899_85421971_85422050
15461	chr4	-	3320	18	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	162	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	125.716988691564	2	81	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTACCTGACTTGTCT	11	True	NA	NA	False	NA	NA	NA	41124293	41114434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119751_41119877_41120006_41120111_41123258_41123376_41123458_41123660_41124158
15463	chr6	+	2962	13	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	9	-3	intron_retention	FALSE	canonical	3	728	junction_2	41.2723844988658	5	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTTGCTGTTGTGTTTTT	5446	False	NA	NA	False	NA	NA	NA	125108880	125121713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114474_125114597_125114688_125116602_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
15464	chr11	+	2740	8	NIC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	-6	752	intron_retention	FALSE	canonical	3	226	junction_5	20.985903918233	363	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017298	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
15465	chr8	+	2699	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	6	8	0	-8	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATTGTCCAGTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	72704920	72724169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
15466	chr17	-	1974	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	674.696416499947	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	45906453	45896127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900402_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
15468	chr3	-	2203	12	NIC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	1	0	intron_retention	FALSE	canonical	3	466	junction_6	151.248632259371	1823	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	NA	False	NA	NA	NA	127346995	127330362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340840_127341010_127341196_127346831
15469	chr2	-	3251	14	FSM	ENSMUSG00000009207.16	ENSMUST00000111993.9	3321	14	27	43	-5	0	multi-exon	FALSE	canonical	3	34	junction_2	86.7381968506344	273	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTATTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	74409265	74350677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_74352642_74358435_74358519_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
15470	chr9	+	1230	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	48	505	48	-505	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTGGCCAAATTGCCA	5125	False	NA	NA	False	NA	NA	NA	108539344	108561335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
15471	chr2	+	2846	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-1	-5	intron_retention	FALSE	canonical	2	4	junction_21	95.1597612717122	19	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATAGTTGTTGTATGCT	NA	False	NA	NA	False	NA	NA	NA	130266283	130285649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282949_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285100_130285320_130285433
15472	chr2	+	4114	4	Antisense	novelGene_ENSMUSG00000068134.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTTCACTTTTGAGTGGC	NA	False	NA	NA	False	NA	NA	NA	149956325	149978615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_149960120_149961483_149961548_149961743_149961871_149978486
15473	chr14	-	4321	8	NIC	ENSMUSG00000022023.7	novel	3704	10	NA	NA	-68	-4	intron_retention	FALSE	canonical	3	326	junction_1	17.7350109175297	10	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTAAAAACCATAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	79718470	79698393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
15474	chr16	+	3208	3	NIC	ENSMUSG00000058550.16	novel	1271	6	NA	NA	5051	-4	intron_retention	FALSE	canonical	3	460	junction_2	67	12	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	48109200	48114596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48111678_48113273_48113470_48114061
15475	chr5	-	2267	7	NNC	ENSMUSG00000040731.14	novel	2726	7	NA	NA	-3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	801.478720172213	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATAACACTTATGCTTG	2199	False	NA	NA	False	NA	NA	NA	134668182	134648739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_134650287_134650358_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
15476	chr18	+	3652	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	677.290817308985	1	130	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGTCTAAGAAGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	35251941	35387824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285651_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315611_35355121_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384257_35385645_35385804_35386657
15477	chr16	+	2616	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	32	0	6	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	606	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	4501965	4525559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
15478	chrX	+	4482	2	ISM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	49	-13	3	7	intron_retention	FALSE	canonical	3	894	junction_1	0	36	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGATTTTCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	133501976	133507816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_133502083_133503440
15479	chr5	+	3165	5	NIC	ENSMUSG00000029304.15	novel	1411	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	5956	junction_2	186.989304506969	12	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGTCTGGTGGTGTCAA	NA	False	NA	NA	False	NA	NA	NA	104582986	104588914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_104583063_104584240_104584309_104584406_104585602_104586091_104586134_104587130
15480	chr12	-	2447	15	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-4985	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	264.400988373836	1710	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATTCTGTTTATTTAGTG	NA	False	NA	NA	False	NA	NA	NA	87524029	87496681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017_87519029_87523796
15481	chr17	+	4030	25	NNC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	30	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	29.403059884229	4	58	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTCTCTTCCAGTAT	NA	False	NA	NA	False	NA	NA	NA	25352394	25381065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371319_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
15483	chr17	+	4002	4	NNC	ENSMUSG00000092390.2	novel	1406	3	NA	NA	-13774	2489	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	1.4142135623731	132	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATATTGTTTACAAAC	NA	False	NA	NA	False	NA	NA	NA	38306763	38325776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_38306872_38320538_38320666_38320869_38320931_38322070
15484	chrX	-	2716	4	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	intron_retention	FALSE	canonical	3	11043	junction_3	2417.2094562854	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101231059_101231427_101231978_101232903
15485	chr1	-	2425	9	NIC	ENSMUSG00000006299.14	novel	1817	11	NA	NA	15	-1	intron_retention	FALSE	canonical	3	1233	junction_6	54.6006810854956	54	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	74323882	74318999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
15486	chr5	+	4559	4	NIC	ENSMUSG00000029203.17	novel	4682	6	NA	NA	-6	-3	combination_of_known_splicesites	FALSE	canonical	2	20	junction_1	657.686010866043	10	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCACATGTTTTATATCTC	NA	False	NA	NA	False	NA	NA	NA	65694670	65756328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_65694890_65749218_65749319_65751762_65751892_65752217
15487	chr12	+	2985	5	NIC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	0	-435	intron_retention	FALSE	canonical	3	1278	junction_1	301.18048990597	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTTTTCTGTGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	80992307	80996836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992447_80993349_80994369_80994569_80995943_80996267_80996379_80996493
15488	chr9	+	1526	16	ISM	ENSMUSG00000032604.17	ENSMUST00000207126.2	3066	22	-15	2157	0	-184	5prime_fragment	FALSE	canonical	3	468	junction_2	27.1633740335933	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTGTAGCAGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	108385254	108390978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867
15489	chr18	-	2556	9	NNC	ENSMUSG00000024583.4	novel	1998	9	NA	NA	-52	678	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	312.499199998976	8	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGGTCTCATCCTATTT	NA	False	NA	NA	False	NA	NA	NA	63825445	63795759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146_63825173_63825301
15490	chr2	+	2032	4	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-51	33913	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	144.721187882847	16	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGACTGTAATTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	176766061	176813053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176766152_176776035_176776126_176776368_176778011_176812843
15491	chr11	+	3359	19	NNC	ENSMUSG00000020705.7	novel	4011	18	NA	NA	22	-202	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	119.819772065289	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGATTTTTGTGAAGG	NA	False	NA	NA	False	NA	NA	NA	106107773	106139763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317_106139060_106139487
15492	chr13	+	1257	1	Antisense	novelGene_ENSMUSG00000045136.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTAGTGGCCCTTTGCCC	NA	False	NA	NA	False	NA	NA	NA	34311213	34312470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34311200_34312500
15493	chr5	-	4062	31	NNC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	65.7093262448761	102	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAAGCGTCACTTTTT	NA	False	NA	NA	False	NA	NA	NA	134485543	134386517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438512_134439662_134439964_134443988_134444131_134445906_134446036_134485362
15495	chr2	+	2555	5	NNC	ENSMUSG00000027424.12	novel	2840	5	NA	NA	-2	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	209.606178344056	1123	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAGATATTTAACT	NA	False	NA	NA	False	NA	NA	NA	144112858	144122413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_144112993_144113834_144114405_144118234_144118464_144120437_144121047_144121400
15496	chr15	-	3154	18	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	7	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_17	55.3629733985577	326	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACAGTGTGTGCCATTG	NA	False	NA	NA	False	NA	NA	NA	79212369	79170422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834_79211915_79212288
15497	chr13	+	2106	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	116	2081	31	-30	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTGCAAAATAAAGCCAAAC	NA	False	NA	NA	False	NA	NA	NA	3588178	3615790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
15498	chr14	+	3346	2	ISM	ENSMUSG00000075592.11	ENSMUST00000227465.2	470	3	184	-2925	158	2925	3prime_fragment	FALSE	canonical	3	80	junction_1	0	40	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAAAAACCGGAGGGTG	NA	False	NA	NA	False	NA	NA	NA	56091650	56103522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_56091884_56100409
15499	chr16	+	3306	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	5	-224	5	-17	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	7018	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGCCTCGAAAAACCAAA	496	False	NA	NA	False	NA	NA	NA	13758533	13767466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
15500	chr14	+	3371	15	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_4	114.218105001808	5	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	7	True	NA	NA	False	NA	NA	NA	25842611	25887228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873153_25873188_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
15501	chr12	-	3762	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	-11	-1868	0	-40	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	2	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTCAGAAAGTGGTA	NA	False	NA	NA	False	NA	NA	NA	87490609	87472978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
15502	chr7	+	2910	14	ISM	ENSMUSG00000004056.16	ENSMUST00000108343.8	3122	15	1516	1	-415	-1	3prime_fragment	FALSE	canonical	2	16	junction_1	139.336636333924	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGGCCCAGTCCACATT	NA	False	NA	NA	False	NA	NA	NA	27306757	27338872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27306831_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
15503	chr11	+	4363	23	NNC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_2	81.6321622729385	1	138	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCAAGCTGTTTATTG	987	False	NA	NA	False	NA	NA	NA	101443692	101472772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444813_101444925_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463932_101464004_101465824_101466243_101467131_101467236_101468019_101468078_101468757_101468864_101471410
15504	chr6	-	2296	8	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-136	-3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	1456.35795386846	8	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8349	False	NA	NA	False	NA	NA	NA	145022046	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
15505	chr18	+	3249	4	NNC	ENSMUSG00000057561.11	novel	2165	3	NA	NA	4	-6	intron_retention	FALSE	canonical	2	5	junction_1	803.038535120755	1	115	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATATCTAAATGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730825	46743272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46731224_46731326_46731416_46731707_46731768_46740570
15506	chr8	+	4209	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	164	-3	intron_retention	FALSE	non_canonical	0	0	junction_12	268.3797948537	1	173	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGAGGCTCACTTGAT	6005	False	NA	NA	False	NA	NA	NA	107330938	107396875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392031_107392157_107392818_107392963_107395037
15507	chr6	-	2308	15	NIC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	-5	-6	intron_retention	FALSE	canonical	3	82	junction_14	164.231310867897	17	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTGGAAAACTTAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	97182534	97160973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_97161827_97162301_97162508_97162610_97162712_97163029_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
15508	chr12	+	2881	22	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	-32	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_21	62.5021722978499	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	17398426	17480096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115_17479624_17479795
15509	chr12	+	2832	6	NIC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	-11	-837	intron_retention	FALSE	canonical	3	476	junction_5	37.72850381343	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCTGAAAGGTAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	87194480	87209802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87208328_87208813
15510	chr11	+	5131	24	NNC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	60.8230567663656	17	72	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACCGTTTGTCATTTCAA	NA	False	NA	NA	False	NA	NA	NA	84070706	84292477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84070753_84083904_84083952_84086263_84086514_84104983_84105117_84106659_84106799_84113965_84114000_84206665_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
15511	chr17	+	2429	8	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	225.638594903895	10	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5639	False	NA	NA	False	NA	NA	NA	34128488	34134564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131302_34131601_34131782_34132246_34132701_34132816_34133037_34134316
15512	chr11	+	3619	8	ISM	ENSMUSG00000017421.19	ENSMUST00000108216.8	2152	9	-9	-367	-9	367	intron_retention	FALSE	canonical	3	903	junction_7	56.3451462878932	22	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATTATTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	80274147	80285476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660
15513	chr1	-	5826	10	NNC	ENSMUSG00000018199.10	novel	8738	9	NA	NA	76	-2506	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.38214748114869	351	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCATGTTGTAGATATT	NA	False	NA	NA	False	NA	NA	NA	143652730	143629033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_143631101_143631430_143633633_143635680_143635828_143636090_143636205_143637007_143637125_143641170_143641309_143641511_143641659_143642327_143642549_143646163_143646765_143652658
15514	chr7	+	4030	26	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	-3	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	49.2426806743906	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACCATGCGAGTGCCTG	540	False	NA	NA	False	NA	NA	NA	110628198	110655574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651595_110652585_110652686_110653020_110653134_110654565_110655133_110655282
15517	chr2	+	5739	31	Intergenic	novelGene_2762	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	135	9	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTTGGTGAAGTTTAG	NA	False	NA	NA	False	NA	NA	NA	160807534	160950945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_160808659_160809705_160809915_160811256_160811476_160812065_160812126_160819377_160819440_160821288_160821418_160823493_160823601_160824545_160824634_160824976_160825137_160825581_160825783_160826377_160826580_160830175_160830290_160832166_160832343_160834032_160834199_160850273_160850471_160854941_160855152_160856002_160856262_160859097_160859239_160859944_160860117_160861365_160861616_160862886_160863008_160867857_160867997_160868170_160868261_160871102_160871215_160871822_160871884_160872668_160872729_160881112_160881264_160883904_160884053_160894307_160894828_160901840_160901895_160950908
15519	chr16	-	3382	8	NIC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-14	-72	intron_retention	FALSE	canonical	0	0	junction_7	968.398678231233	45	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTATTTGCTGATGGTT	1007	False	NA	NA	False	NA	NA	NA	11021142	11010905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_11011602_11012323_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
15521	chr2	+	2422	10	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	1993	junction_1	196.926946409632	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119891_130120075_130120211_130120816
15522	chr13	-	3275	27	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	-63	73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	173.675000841111	1	70	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGACAGTGTTTTAGTGAC	7173	False	NA	NA	False	NA	NA	NA	113063995	113004315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113004530_113005544_113005650_113009432_113009495_113011137_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039936_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
15523	chr11	-	3766	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	-8	0	-8	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	1	135	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88755420	88721617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
15524	chr18	-	2392	14	NNC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2113.20654862694	3	98	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649570	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633724_64634416_64634476_64636572_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644677_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
15525	chr1	-	2315	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2064.26858545573	2	85	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287016	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285171_86285828_86285946_86286927
15526	chr8	-	2746	18	FSM	ENSMUSG00000019470.13	ENSMUST00000163038.8	4409	18	-4	1667	-4	-1	multi-exon	FALSE	canonical	3	374	junction_11	45.4063544476041	677	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCGGTCTTGACCTCCTT	1018	False	NA	NA	False	NA	NA	NA	3671309	3660087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
15527	chr11	-	2430	17	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_14	366.837327708073	64	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	35725366	35699207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723081_35723277_35723397_35723491_35723998_35724134_35725263
15529	chr9	-	2448	10	FSM	ENSMUSG00000031922.13	ENSMUST00000147115.8	2262	10	-156	-30	-4	0	multi-exon	FALSE	canonical	3	58	junction_3	63.5314639653475	621	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGCTAACAAAGGCTTTA	NA	False	NA	NA	False	NA	NA	NA	13738407	13719090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
15530	chr9	+	4868	20	FSM	ENSMUSG00000032571.15	ENSMUST00000065778.13	4711	20	-171	14	-9	-6	multi-exon	FALSE	canonical	3	108	junction_1	21.4158146964708	110	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCATCCTGAGAGTTGGG	NA	False	NA	NA	False	NA	NA	NA	105520197	105564842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_105520590_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540445_105544930_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
15533	chr1	+	6378	29	Antisense	novelGene_ENSMUSG00000056050.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	150	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCATGTTGTGGCCACC	NA	False	NA	NA	False	NA	NA	NA	183107681	183150862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_183108509_183109058_183109199_183110438_183110513_183110600_183110677_183110780_183110846_183111650_183111788_183111944_183112048_183112158_183112227_183112330_183112367_183112487_183112548_183113678_183113781_183114962_183115103_183115257_183115345_183115428_183115488_183116287_183116406_183116483_183116608_183117373_183117476_183117894_183117976_183119508_183119616_183119708_183119790_183120021_183120109_183120812_183120831_183125670_183125805_183132405_183132554_183135181_183135484_183137604_183140362_183143390_183143474_183146985_183147124_183150738
15534	chr9	-	1689	7	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1696.49855093759	8	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775067	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769324_110769407_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
15535	chr2	+	1714	2	Genic_Genomic	ENSMUSG00000081272.2	novel	1308	1	NA	NA	-22	462	multi-exon	FALSE	canonical	0	0	junction_1	0	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATAGTATGT	NA	False	NA	NA	False	NA	NA	NA	49198144	49199936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_49199043_49199120
15536	chr1	+	2647	2	NNC	ENSMUSG00000067017.6	novel	2858	2	NA	NA	-2	-7	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATACTATCTATCCATGC	NA	False	NA	NA	False	NA	NA	NA	105383693	105386547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_105383927_105384133
15537	chrX	-	3717	10	NNC	ENSMUSG00000031232.18	novel	4524	10	NA	NA	-12	-683	intron_retention	FALSE	canonical	0	0	junction_4	73.3257571844074	52	127	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCCAACCTGAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	105055404	105012372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027360_105027974_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
15538	chr13	-	3782	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18665	3043	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	27.2	1	120	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCAGCCCCAATTAAAG	NA	False	NA	NA	False	NA	NA	NA	74739488	74724433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74727579_74728971_74729033_74729232_74729360_74730309_74730434_74731765_74731993_74739390
15540	chr2	-	2840	11	NNC	ENSMUSG00000037376.15	novel	2828	11	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	117.678417732395	558	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGTCATTAATGATACAAT	NA	False	NA	NA	False	NA	NA	NA	132657987	132646129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652431_132652908_132653019_132653967_132654096_132657723
15541	chr18	+	2684	20	NNC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	16533	16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	288.106388090798	2	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAGCATAATGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	3399843	3435401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424544_3425497_3425572_3426094_3426224_3426316_3426404_3426757_3426907_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
15542	chr9	+	2691	8	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	18	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	205.724106908416	1101	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824663	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77890016
15543	chr12	+	1920	9	NNC	ENSMUSG00000021134.18	novel	1498	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	31	junction_6	797.640651781866	50	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992307	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995330_80995868_80995943_80996267_80996379_80996493
15544	SIRV7	-	1918	6	NNC	SIRV7A	novel	2462	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1670.53363929015	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	147926	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1996_2540_2676_2993_3112_43028_43078_114680_114989_147608
15545	chr2	-	3409	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	35	953	6	-953	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	788	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGCTTTTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	34760939	34740698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
15546	chr13	+	2180	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	73	2050	2	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588135	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
15547	chr17	-	3554	22	NNC	ENSMUSG00000024135.11	novel	3530	21	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	28.8156231245209	220	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	NA	False	NA	NA	NA	86452585	86292092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_86292912_86295752_86295938_86304933_86304976_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
15549	chr1	+	2603	14	NIC	ENSMUSG00000033793.13	novel	970	5	NA	NA	381	672	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	139.358420021071	18	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACTTTGTATATTTTAT	NA	False	NA	NA	False	NA	NA	NA	5153767	5233424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_5153849_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
15550	chr10	+	4423	25	NIC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	14	-2	intron_retention	FALSE	canonical	2	24	junction_2	56.7452274057769	2	126	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAAACCGCTAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	128139217	128157214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128139341_128139963_128140259_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
15551	chr9	+	1840	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	605.847967727878	5	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183599	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183668_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
15552	chr1	+	2556	4	FSM	ENSMUSG00000053332.14	ENSMUST00000161229.8	2556	4	0	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_3	423.601489872524	890	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160865118_160865564_160865608_160865794_160865843_160866026
15554	chr11	-	2747	20	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	118	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	287.481421777192	1	45	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTCTGATAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	106146504	106139966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141652_106141731_106141850_106141979_106142097_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145615_106145659_106146145_106146252_106146410
15555	chr6	+	2760	14	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	533.012972077009	1	65	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	71808317	71852238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849932_71851300
15556	chr5	+	2702	4	NNC	ENSMUSG00000029462.19	novel	2716	4	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1045.8626423516	4947	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	701	False	NA	NA	False	NA	NA	NA	122492453	122503047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122492540_122498067_122498268_122500098_122500335_122500867
15558	chr4	+	2233	9	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	23	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	949.463721989945	1821	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTCCAGTGTGTCACT	16	True	NA	NA	False	NA	NA	NA	40722502	40733894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731755_40732080_40732177_40732727
15559	chr10	-	2564	13	Antisense	novelGene_ENSMUSG00000025395.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	358	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCGCATGGACCTGCGCCG	NA	False	NA	NA	False	NA	NA	NA	127865666	127851046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127851219_127851830_127851991_127853844_127853949_127854013_127854604_127855284_127856134_127857539_127857599_127858729_127858842_127859451_127859542_127859647_127859787_127862384_127862455_127862919_127863013_127865059_127865153_127865633
15560	chr9	+	4559	8	FSM	ENSMUSG00000079084.13	ENSMUST00000217444.4	4816	8	93	164	-8	0	multi-exon	FALSE	canonical	2	4	junction_3	11.4944529656523	55	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTCTTTCTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	13246628	13292703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_13246677_13251695_13252424_13252850_13253056_13262360_13262454_13266811_13266937_13272649_13272821_13281884_13282071_13289700
15561	chr2	+	2988	13	FSM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	17	-1	17	1	multi-exon	FALSE	canonical	3	410	junction_2	48.8355374929182	530	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTGGCATCTGTGG	NA	False	NA	NA	False	NA	NA	NA	25162506	25175928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25162690_25162926_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
15562	chr2	-	3821	3	NIC	ENSMUSG00000026958.14	novel	3017	8	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	281	junction_2	29	1	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTCTAGTAGGATCCAT	9024	False	NA	NA	False	NA	NA	NA	25246348	25242302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25244647_25244752
15563	chr15	+	1955	13	NIC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-19	-5	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	505.832482151947	113	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959428	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78959561_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
15564	chr10	+	2002	7	NNC	ENSMUSG00000006728.13	novel	2038	7	NA	NA	48	-21	intron_retention	FALSE	canonical	0	0	junction_3	2121.14196837458	56	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAAGAGTATGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	126899532	126903145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900668_126900872_126901023_126901873_126901969_126902106_126902797
15565	chr4	-	3226	7	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	517.136802231501	24	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000076	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134941998_134942841_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
15566	chr7	-	1967	17	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-373	30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	488.618572482668	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTACTTTTATCTGTTA	NA	False	NA	NA	False	NA	NA	NA	33928795	33901553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926793_33928352_33928422_33928707
15567	chr10	+	2429	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	17	10	0	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	1	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21870581	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
15568	chr7	+	4215	7	NNC	ENSMUSG00000037640.16	novel	811	6	NA	NA	4	2206	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	71.1407056473296	28	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCAGCAGGTCCAGTTAT	NA	False	NA	NA	False	NA	NA	NA	27430839	27455333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592_27449596_27449677_27451541_27455319
15569	chr5	-	3376	9	NIC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	22	465	intron_retention	FALSE	canonical	3	1613	junction_6	130.704820110048	15	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAACCGTGCTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	117527065	117517216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_117517972_117518831_117518887_117519900_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117524924_117525933_117525999_117526981
15570	chrX	+	2184	18	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	31	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	209.787782043687	342	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	56454544	56534133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56530745_56530799_56533944
15571	chr17	-	2422	12	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	-12	-4	intron_retention	FALSE	canonical	3	1453	junction_4	337.376043964776	1998	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCATAGCTCTGTGCATCC	NA	False	NA	NA	False	NA	NA	NA	45906453	45896132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
15572	chr4	+	3981	8	NNC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	4	1	intron_retention	FALSE	canonical	3	35	junction_4	66.0951694798601	5	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTTGAGGTCATGATGT	8296	False	NA	NA	False	NA	NA	NA	156194479	156211721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156204630_156206389_156206874_156207991_156208127_156208432_156208580_156209873
15573	chr5	+	1926	14	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	2	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	715.629751218046	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650717	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222_45669568_45669889
15574	chr2	-	4214	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	-70	-1748	3	2	multi-exon	FALSE	canonical	3	231	junction_5	32.1212569481487	1	124	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATAATTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73722969	73646861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
15575	chr8	-	2632	6	NNC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	540	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_5	99.6441669140748	1	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	112654252	112638642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112654180
15576	chr1	-	2793	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-22	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1295.73669772981	1	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTTGTTCTGTGATTGT	NA	False	NA	NA	False	NA	NA	NA	128287423	128259342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261392_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267143_128269067_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281306_128283249_128283397_128287195
15577	chr17	+	3769	31	NNC	ENSMUSG00000067150.7	novel	5081	32	NA	NA	26	-1313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	106.55483721227	2	133	13	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCATCCTTCTCCGGCCTC	NA	False	NA	NA	False	NA	NA	NA	46513768	46553208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46513952_46515580_46515703_46517340_46517486_46518704_46518843_46519000_46519184_46525484_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546927_46547835_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
15578	chr2	-	3117	16	NNC	ENSMUSG00000034032.16	novel	4744	25	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	130.190561187139	51	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACTGATCTGGACTGTT	487	False	NA	NA	False	NA	NA	NA	119617995	119594448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600114_119604612_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
15579	chr18	+	3669	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-2	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	583.356663234245	1	181	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCCATTAAGAACCAAGTC	NA	False	NA	NA	False	NA	NA	NA	35251963	35387811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377009_35377209_35377749_35377902_35382754_35382845_35383866_35384081_35384218_35384325_35385668_35385804_35386657
15580	chr5	+	2741	12	NNC	ENSMUSG00000005672.13	novel	5214	21	NA	NA	43	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	417.488120284293	4	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTTTCTGTTTGTTTT	809	False	NA	NA	False	NA	NA	NA	75735657	75817382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801697_75816689
15581	chr14	-	3536	10	FSM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	-69	3867	21	37	multi-exon	FALSE	canonical	3	47	junction_1	10.4432623444526	17	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATACCATTTGCACATAC	NA	False	NA	NA	False	NA	NA	NA	36690713	36600759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36601720_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
15582	chr14	-	2496	1	ISM	ENSMUSG00000058690.15	ENSMUST00000067700.13	7334	10	91252	4	8925	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	51	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGCTTGTCTCCACAGC	NA	False	NA	NA	False	NA	NA	NA	36599392	36596896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_36596900_36599400
15583	chrX	-	3096	15	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGCTGGCTGGCAAGCA	NA	False	NA	NA	False	NA	NA	NA	84247591	84092296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_84092529_84097574_84097633_84133416_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183103_84185335_84185443_84187633_84187772_84188516_84188556_84192735_84192799_84193815_84193885_84196632_84196710_84234211_84234317_84246079
15584	chr3	-	3632	19	NNC	ENSMUSG00000027889.18	novel	3586	19	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	61.068697402754	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993978	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107982438_107982564_107982676_107982813_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
15585	chr6	+	2067	15	Antisense	novelGene_ENSMUSG00000029782.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACCACTTTCCTAGTTT	NA	False	NA	NA	False	NA	NA	NA	30482402	30508714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_30482984_30487372_30487447_30489290_30489392_30489476_30489590_30491085_30491186_30492597_30492724_30494738_30494834_30497165_30497240_30497818_30497992_30501898_30502008_30502064_30502102_30505731_30505978_30506787_30506917_30508452_30508511_30508663
15586	chr15	+	2035	10	Antisense	novelGene_ENSMUSG00000022391.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGATGGTTAATTCCGT	1851	False	NA	NA	False	NA	NA	NA	81588454	81597121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_81589462_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593807_81594560_81594755_81595674_81595759_81595841_81595940_81596219_81596342_81597024
15587	chr4	-	1280	8	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	39	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	365.178904994608	10	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2531	False	NA	NA	False	NA	NA	NA	129229124	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203665_129215709_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
15589	chr9	+	1866	13	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	31	-3	intron_retention	FALSE	canonical	3	1280	junction_12	412.141991106625	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAAAAAAAAGTGACAAC	1220	False	NA	NA	False	NA	NA	NA	108437709	108442760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
15590	chrX	-	2480	8	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-39	2	intron_retention	FALSE	canonical	1	2	junction_2	578.697234999372	334	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72309035	72298143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72299035_72299128_72299225_72301201_72301341_72302698_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
15592	chr2	+	1873	10	FSM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	25	0	25	0	multi-exon	FALSE	canonical	3	321	junction_1	22.7991769398766	441	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATTTATATGAA	NA	False	NA	NA	False	NA	NA	NA	76200352	76214112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76213798
15595	chr9	-	3743	19	NNC	ENSMUSG00000032480.18	novel	3806	19	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	146.940653175204	1	112	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGAGTGCTGCTGTCC	NA	False	NA	NA	False	NA	NA	NA	109930113	109913395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917761_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
15597	SIRV7	-	2448	5	NNC	SIRV7A	novel	2462	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1758.32866310596	2	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	147923	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2664_2993_3112_43028_43078_114680_114989_147608
15598	chr14	+	2376	14	NIC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	17	-12	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	461.412777759015	605	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAGGACTAACCATAAAT	NA	False	NA	NA	False	NA	NA	NA	45567261	45587150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_45567561_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
15599	chr10	+	3842	11	NNC	ENSMUSG00000020156.17	novel	2858	13	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_7	181.64426773229	2	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATATGTGTCATAGTCATT	8464	False	NA	NA	False	NA	NA	NA	80062513	80079732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80062539_80064155_80064273_80064828_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074701_80076086_80076277_80076597_80077035_80077630_80077720_80079419
15600	chr16	-	2989	9	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18863	6707	multi-exon	FALSE	non_canonical	0	0	junction_1	0	293	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTAGAGAAATGCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	38412525	38382977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38383410_38384476_38384661_38393412_38393638_38396103_38396187_38402327_38402487_38405535_38405879_38406580_38406771_38408544_38408664_38411271
15601	chr19	-	2700	19	NNC	ENSMUSG00000063904.5	novel	2683	18	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	255.979865141821	770	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCAGTGTATGTTTCT	NA	False	NA	NA	False	NA	NA	NA	4978281	4957258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973316_4973351_4973692_4973802_4976812_4977088_4978247
15602	chr4	-	3015	9	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	656.515422514963	1	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327315	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310560_141312025_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327256
15604	chr10	+	2849	4	NIC	ENSMUSG00000006728.13	novel	2038	7	NA	NA	-1	-13	intron_retention	FALSE	canonical	3	4641	junction_1	505.975186040668	311	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGTCTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	126899401	126903153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126900590_126900703_126901873_126901969_126902106_126902797
15605	chrX	+	2276	1	FSM	ENSMUSG00000119320.1	ENSMUST00000082806.3	137	1	-1629	-510	-1629	510	mono-exon	FALSE	NA	NA	NA	NA	NA	306	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTTTTTGTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	73314460	73316736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73314500_73316700
15607	chr11	-	1937	15	NIC	ENSMUSG00000014195.17	novel	1900	15	NA	NA	-20	-2	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	912.841169097889	4248	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTCTTTGGTCCTTGGCTT	5871	False	NA	NA	False	NA	NA	NA	100510505	100473647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480504_100480605_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
15608	chr9	-	1396	6	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	23	206	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1754.80157282811	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGCAGATGGGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	110775120	110769104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771507_110771593_110771713_110772219_110772322_110773258_110773312_110774891
15609	chr7	+	2144	19	Antisense	novelGene_ENSMUSG00000098593.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	61	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGACATCATACTGGAA	2200	False	NA	NA	False	NA	NA	NA	143111441	143140182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_143111743_143112863_143112949_143113381_143113444_143115597_143115663_143116696_143116781_143118723_143118801_143122050_143122126_143122675_143122860_143123136_143123234_143123568_143123674_143123756_143123891_143124281_143124407_143125219_143125336_143128251_143128372_143129654_143129746_143130323_143130460_143138377_143138535_143139435_143139537_143140153
15611	chr4	-	3859	10	NIC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	59.1553719005414	35	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTGGGAAGAGTGCTCT	-22	True	NA	NA	False	NA	NA	NA	46138720	46114745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138491
15612	chr11	-	2060	11	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	1697.48030916414	1	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673514_106674803_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676318_106677273_106677371_106677734_106677901_106679098
15613	chr7	+	2905	14	NNC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	307.567474677167	1	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79944222	79966002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950798_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
15614	chr13	+	2526	23	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	4	57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	214.014134081786	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGAGTGCTGGGAACT	NA	False	NA	NA	False	NA	NA	NA	6598198	6628623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618735_6620705_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476
15615	chr19	+	3546	9	FSM	ENSMUSG00000024785.8	ENSMUST00000064393.6	1803	9	-4	-1739	-4	1653	multi-exon	FALSE	canonical	3	369	junction_1	16.9958634673264	928	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGCTTGCTGTCTTGGCC	NA	False	NA	NA	False	NA	NA	NA	29078770	29122982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
15616	chr17	-	2302	12	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	-12	-7	intron_retention	FALSE	canonical	3	1453	junction_5	308.517301978081	110	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCATAGCTCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	45906453	45896135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900747_45900848_45901265_45903104_45903188_45904257_45904359_45906407
15617	chr11	-	1235	7	NNC	ENSMUSG00000014195.17	novel	1771	14	NA	NA	-23	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	997.532901156092	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	NA	False	NA	NA	False	NA	NA	NA	100481383	100473643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100481191_100481371
15618	chr9	+	3335	9	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	1	-2	intron_retention	FALSE	canonical	3	1280	junction_8	495.382869606933	2	117	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1180	False	NA	NA	False	NA	NA	NA	108437669	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108439580_108439990_108440711_108440794_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
15619	chr2	-	3884	13	NIC	ENSMUSG00000027104.19	novel	3943	12	NA	NA	6	-12	combination_of_known_junctions	FALSE	canonical	3	36	junction_10	116.768645905768	1	115	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTATCTTTAAATTATG	NA	False	NA	NA	False	NA	NA	NA	73722888	73646879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
15620	chr2	+	3024	16	NNC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	11	-949	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	180.479657210076	456	8	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGATATGTGGTTACC	NA	False	NA	NA	False	NA	NA	NA	29825450	29849434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839042_29839165_29839359_29840656_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
15621	chrX	+	2105	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	1394.9852946258	1	44	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487939_100488345_100488397_100488900_100488941_100489724_100489835_100491199_100491517_100491750
15622	chr12	-	2715	5	Intergenic	novelGene_4320	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	21.2058364607483	1	46	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	22302650	22291526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_22293383_22293502_22294077_22295404_22295466_22295667_22295795_22302553
15623	chr2	-	1850	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	3059	1729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	437.731652956466	65	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGTATGTTTCTGTCTG	5407	False	NA	NA	False	NA	NA	NA	177266933	177259267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177259412_177260740_177262087_177263226_177263288_177263479_177263607_177266761
15624	chr16	+	7225	46	FSM	ENSMUSG00000040785.20	ENSMUST00000117648.9	7415	46	175	15	1	-15	multi-exon	FALSE	canonical	0	0	junction_37	31.7357141963995	108	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTATAAAAGGTCAGCC	NA	False	NA	NA	False	NA	NA	NA	94171651	94270064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329_94244351_94245343_94245410_94248857_94249008_94251878_94252019_94253822_94253892_94255285_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620_94260962_94263080_94263208_94263354_94263490_94267761_94267855_94268784
15625	chr18	-	6686	34	Antisense	novelGene_ENSMUSG00000024236.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCGGAACTGGAGCGACCC	NA	False	NA	NA	False	NA	NA	NA	5119283	4920541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_4920873_5037105_5037164_5040145_5040238_5046586_5046645_5046761_5046915_5048883_5049499_5058128_5058158_5058710_5058774_5059228_5059366_5062157_5062403_5063190_5063769_5064468_5064689_5073878_5074003_5082780_5082938_5086541_5086623_5086707_5086796_5088635_5088815_5090786_5090959_5092842_5092999_5094535_5094673_5095169_5095320_5095435_5095580_5097424_5097600_5098904_5099051_5099431_5099707_5103570_5103725_5105763_5105872_5106663_5106872_5108574_5108706_5114527_5114685_5115975_5116120_5116970_5117097_5118098_5118254_5118343
15627	chr6	+	2125	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	0	intron_retention	TRUE	non_canonical	0	0	junction_4	1916.27573368239	93	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684552	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690226_122690285
15628	chr10	+	4163	28	Antisense	novelGene_ENSMUSG00000035673.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	83	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTCCTAGGAGACAGGCA	1953	False	NA	NA	False	NA	NA	NA	79892863	79908346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_79893701_79893790_79893980_79894085_79894162_79894247_79894380_79894468_79894569_79894645_79894734_79895768_79895912_79895991_79896074_79896227_79896339_79896425_79896499_79896625_79896735_79896816_79896954_79897149_79897284_79897997_79898164_79898399_79898596_79899483_79899563_79899978_79900077_79900153_79900331_79902383_79902537_79902663_79902768_79903103_79903229_79904161_79904297_79904516_79904612_79904695_79904829_79905117_79905271_79905444_79905538_79905796_79905888_79908192
15629	chr11	+	2455	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	-228	-2	-228	1	multi-exon	FALSE	canonical	3	130	junction_1	115.462537790991	1495	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGTCTGTGCTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	50268317	50277356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
15630	chr6	+	3439	24	NIC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	523	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_10	103.221475323035	1	47	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	83906359	83963853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83956828_83956892_83960957_83961057_83961758_83961878_83963539
15631	chr7	-	4199	12	NNC	ENSMUSG00000025512.16	novel	4222	13	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_10	63.6859547031077	5	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAGTGCTGGGGAGATGT	NA	False	NA	NA	False	NA	NA	NA	141119732	141075313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141109615_141110062_141111281_141112581_141112887_141119685
15632	chr5	+	1923	9	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	4	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1420.87736979656	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATAACAATATATTCTCGC	331	False	NA	NA	False	NA	NA	NA	77099198	77115343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77112342_77112470_77114093_77114253_77114494
15633	chr15	-	3578	8	FSM	ENSMUSG00000022195.8	ENSMUST00000227299.2	3206	8	-11	-361	0	-234	multi-exon	FALSE	canonical	3	60	junction_7	97.0238767163074	172	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAATTTTTTATTATTT	NA	False	NA	NA	False	NA	NA	NA	12824727	12808496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
15634	chr2	+	2821	15	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	544.677680385569	1	84	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGAGTGGATGCCCCTA	653	False	NA	NA	False	NA	NA	NA	26279359	26287129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285987_26286206_26286405_26286484
15635	chr2	+	2426	14	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	424.605406794697	6	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867531	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873164_84876027_84876117_84876596_84876784_84876989
15636	chr6	-	2225	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	614.941008914225	4	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8936	False	NA	NA	False	NA	NA	NA	47790318	47773074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775480_47776194_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
15637	chr14	+	2057	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	577.005019821672	106	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAATCCTCAGACTCT	NA	False	NA	NA	False	NA	NA	NA	30271138	30295573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292280_30292919_30293004_30293108_30293203_30294164_30294288_30295293
15638	chr6	+	4872	1	NIC	ENSMUSG00000001517.15	novel	4652	8	NA	NA	44	-272	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	120	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCATATGTACCTCGTAC	NA	False	NA	NA	False	NA	NA	NA	128347965	128352837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_128348000_128352800
15639	chr2	+	3360	14	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-33	2	intron_retention	FALSE	canonical	3	1260	junction_5	153.700276993664	1	119	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCCTTATGTCTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	84867544	84877455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84871134_84871262_84871367_84871451_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
15640	chrX	-	2060	13	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	150	junction_11	363.313789611986	14	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAACCAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	100128978	100122828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127531_100127701_100127881_100128877
15641	chr9	+	6553	3	NNC	ENSMUSG00000079260.4	novel	2921	2	NA	NA	373	3910	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	3	67	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCTTCATGATCACAATT	NA	False	NA	NA	False	NA	NA	NA	114230545	114240254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230626_114233588_114236495_114236687
15642	chr6	-	2694	7	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	20	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1435.09969649808	2	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGTCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39397376	39374743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39382664_39382895_39387021_39387156_39397136
15643	chr1	-	2729	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	154	678	0	-678	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	709	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCTCACAGGGATAGGT	NA	False	NA	NA	False	NA	NA	NA	58544114	58502607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
15644	chr2	+	2299	10	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	240.730575283954	2	88	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCAGCGAAAGGGAGCGA	NA	False	NA	NA	False	NA	NA	NA	154713381	154734736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719739_154720385_154720484_154726232_154726353_154729610_154729729_154730105_154730283_154734611
15645	chr4	-	834	6	NNC	ENSMUSG00000028692.15	novel	2227	8	NA	NA	-97	126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	835.17389805956	1	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATCTTGCTTAGGTATG	NA	False	NA	NA	False	NA	NA	NA	116508690	116496172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116496331_116497006_116497208_116498229_116498340_116499054_116499175_116502700_116502791_116508535
15646	chr9	+	4411	29	NNC	ENSMUSG00000032220.11	novel	4699	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	45.3370034028609	5	35	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTTTCTTCATGACA	NA	False	NA	NA	False	NA	NA	NA	70114631	70307048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873_70223962_70227350_70227441_70229673_70229806_70232114_70232250_70234425_70234559_70242396_70242594_70245010_70245092_70245998_70246086_70248562_70248650_70249263_70249432_70250325_70250412_70253968_70254051_70260541_70260649_70266566_70266666_70269504_70269650_70274897_70275013_70275950_70276121_70277638_70277785_70283785_70283933_70285492_70285651_70286002_70286093_70291085_70291288_70303057_70303228_70306003_70306074_70306305
15647	chr9	+	1809	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	606.29313042455	18	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183601	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212355_108213934
15648	chr19	-	3142	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	15	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	511.666050759673	1	135	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCAATTGTTCCAGAGTA	3933	False	NA	NA	False	NA	NA	NA	5345416	5323976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345064_5345116_5345289
15649	chr4	+	5647	6	NIC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	22	2	intron_retention	FALSE	canonical	3	381	junction_2	439.264567202956	25	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTAACTGGAATTATTA	4728	False	NA	NA	False	NA	NA	NA	135583464	135593128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_135583603_135585615_135585783_135586152_135589189_135590350_135590514_135590833_135590888_135591039
15650	chr13	-	4299	6	FSM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	5	62	5	-62	multi-exon	FALSE	canonical	2	8	junction_3	4.81663783151692	117	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGTAAAGATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	21637895	21626411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_21630000_21631955_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
15651	chr3	-	1741	2	Genic_Genomic	ENSMUSG00000069083.5	novel	1590	1	NA	NA	-126	260	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGATTTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	25266895	25264919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_25266022_25266256
15652	chr17	+	2795	6	NNC	ENSMUSG00000023902.19	novel	2609	7	NA	NA	2	0	intron_retention	FALSE	canonical	3	8	junction_1	100.210578283932	674	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	887	False	NA	NA	False	NA	NA	NA	23819837	23829993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_23819934_23824380_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
15653	chr7	+	3372	15	NNC	ENSMUSG00000030539.14	novel	3949	15	NA	NA	89	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	23.84730336015	4	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTGGCCCACATTC	5801	False	NA	NA	False	NA	NA	NA	79848372	79876145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343_79875597_79875786
15654	chr6	+	3579	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115212.8	3584	12	9	-4	-5	4	multi-exon	FALSE	canonical	3	109	junction_11	130.142642658033	17	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCCCTCTCTCTAGCAG	-19	True	NA	NA	False	NA	NA	NA	30047995	30153461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
15655	chr1	-	2774	8	Antisense	novelGene_ENSMUSG00000025979.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAGTAAACTCATGGTT	NA	False	NA	NA	False	NA	NA	NA	55193998	55175833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_55175897_55181405_55181528_55184281_55184382_55187475_55187519_55187704_55187792_55189302_55189383_55190127_55190240_55191831
15658	chr9	-	2570	17	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	-3	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	448.813835988821	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGAGGAGTGCTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	36678918	36643710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663670_36670032_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
15659	chr12	-	2835	24	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	20	-2331	intron_retention	FALSE	canonical	0	0	junction_21	450.477469859106	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGAAGGCTTGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	13299144	13269304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13295663_13295751_13296026_13296079_13299104
15660	chr5	+	3503	19	NNC	ENSMUSG00000036323.15	novel	3625	19	NA	NA	-7	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	72.703460783353	65	19	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAATAAATTTTAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	77122560	77147741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128426_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
15662	chr2	+	3468	6	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	7	0	-1	intron_retention	FALSE	canonical	3	1993	junction_1	246.739214556584	1	156	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	NA	False	NA	NA	NA	130116365	130121226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355
15663	chr3	+	2306	7	NNC	ENSMUSG00000000561.15	novel	1095	8	NA	NA	-8	-170	intron_retention	FALSE	canonical	1	2	junction_6	366.746960905381	1	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTATGGAATTATGTTCT	NA	False	NA	NA	False	NA	NA	NA	105866815	105872697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105872644
15664	chr13	-	1762	8	Antisense	novelGene_ENSMUSG00000113894.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACCTTGAAAAGCCACATA	NA	False	NA	NA	False	NA	NA	NA	3615821	3604415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3604547_3606313_3606513_3606925_3607056_3609989_3610090_3611863_3612036_3614537_3614685_3614858_3614910_3614989
15667	chr14	-	2483	6	NNC	ENSMUSG00000037824.7	novel	2477	8	NA	NA	17490	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	259.197530852437	4	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTTGGTGATAAATTGA	NA	False	NA	NA	False	NA	NA	NA	40638783	40628403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40630087_40631541_40631662_40633069_40633115_40635004_40635445_40637336_40637508_40638759
15668	chr4	+	3246	25	NIC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_7	45.4064973324303	269	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	3533	False	NA	NA	False	NA	NA	NA	108477136	108491320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483234_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
15669	chr15	+	1174	8	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	112	-30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	442.106645182229	68	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGGCACAGCCCTC	NA	False	NA	NA	False	NA	NA	NA	85220557	85347383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271268_85347121
15671	chrX	+	2654	5	FSM	ENSMUSG00000031148.15	ENSMUST00000129845.2	674	5	68	-2048	68	-7	multi-exon	FALSE	canonical	3	223	junction_3	16.7984374273323	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACTAAGTCGCATTTG	961	False	NA	NA	False	NA	NA	NA	7572159	7576494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
15672	chr8	+	2693	19	NNC	ENSMUSG00000031753.17	novel	2737	19	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	131.337375384311	34	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCATTGTGTTGGGTCC	9635	False	NA	NA	False	NA	NA	NA	111573672	111608857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111573842_111576499_111576583_111577967_111578059_111578932_111579097_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
15673	chr11	+	3325	10	NIC	ENSMUSG00000018932.10	novel	2198	12	NA	NA	0	-7	intron_retention	FALSE	canonical	3	361	junction_4	28.2646225676001	19	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGACTGTGGCAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	60822879	60843630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_60823098_60832705_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
15674	chr4	+	2694	25	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	125.583796449047	58	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	148642914	148666858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664914_148665551_148665621_148666214_148666292_148666740
15675	chr19	-	2637	2	Antisense	novelGene_ENSMUSG00000065087.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAGAAAGACAA	9579	False	NA	NA	False	NA	NA	NA	8703804	8700939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8702618_8702845
15677	chr6	-	3258	25	NNC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	87.4868938597218	2	87	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCAAAGTTGCTATACTT	NA	False	NA	NA	False	NA	NA	NA	30873687	30748409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789748_30790641_30790722_30792865_30793094_30793673_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840547_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30872993_30873177_30873595
15678	chr17	+	2082	10	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-10	-99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1648.68738660955	4	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGTTTCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	13135351	13143855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136929_13137059_13138701_13138813_13139162_13139345_13139626_13139754_13140987_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
15679	chr19	-	2831	9	NNC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	37	-1872	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	135.33332691913	31	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTATTTTCAGTCAGCTA	NA	False	NA	NA	False	NA	NA	NA	43741402	43723564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739934_43741278
15682	chr14	-	3361	28	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-24	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	120.265253246921	1	72	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAGCTTTCTGCACAAAG	9774	False	NA	NA	False	NA	NA	NA	55873112	55863089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868379_55868595_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55871199_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
15683	chr14	-	2691	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	37	-1	34	1	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	1651	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTTTTGACCTAGAGTAA	8237	False	NA	NA	False	NA	NA	NA	20529942	20505343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
15684	chr5	+	3988	5	NIC	ENSMUSG00000029464.11	novel	1592	8	NA	NA	50	0	intron_retention	FALSE	canonical	3	480	junction_4	13.3299474867683	2	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8165	False	NA	NA	False	NA	NA	NA	122510639	122520965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122510720_122511973_122512083_122516529_122519558_122520110_122520240_122520323
15685	chr2	+	2331	6	NNC	ENSMUSG00000027479.15	novel	7336	7	NA	NA	863	-4753	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	455.612730287467	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTCCTGTCTTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	153588175	153610477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153588300_153597850_153597997_153599844_153599986_153603494_153603578_153606866_153607020_153608793
15686	chr2	-	3669	7	NNC	ENSMUSG00000052406.15	novel	2281	8	NA	NA	1	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	86.5808870363431	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGGATGGATCAAATGG	NA	False	NA	NA	False	NA	NA	NA	26854335	26843591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26844609_26845506_26845582_26846300_26846866_26847318_26848580_26850614_26850753_26852394_26852736_26854063
15688	chr1	+	2760	7	NNC	ENSMUSG00000026254.18	novel	1119	7	NA	NA	20	-646	at_least_one_novel_splicesite	FALSE	canonical	1	34	junction_4	1007.39096459893	1	49	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAAACCCACTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	87142027	87167564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152108_87153571_87153725_87153818_87153956_87165567
15689	chr6	-	2866	8	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	37	-19	at_least_one_novel_splicesite	FALSE	canonical	3	159	junction_1	1397.39899784695	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	39397359	39374756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39376245_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
15690	chr11	+	1611	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	0	15	0	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	12	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120655200
15691	chr13	-	4952	5	FSM	ENSMUSG00000046351.12	ENSMUST00000145451.8	1261	5	232	-3923	31	-6	multi-exon	FALSE	canonical	3	23	junction_4	37.5499667110372	34	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCATTTTTGTCTCCACT	9245	False	NA	NA	False	NA	NA	NA	23553139	23537278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553026
15692	chr9	+	2945	11	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-13	-1	intron_retention	FALSE	canonical	0	0	junction_6	2461.66981742069	4	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAACTGTGTTGTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	108765768	108778686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773757_108773957_108774427_108776122_108776403_108776545_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
15694	chr15	-	2387	5	NNC	ENSMUSG00000062397.9	novel	4417	4	NA	NA	101	1626	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_4	3143.77363808211	4341	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTCTAATTTCTTGTAC	256	False	NA	NA	False	NA	NA	NA	37007545	36999245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_37001168_37002082_37002191_37003929_37004067_37005373_37005420_37007371
15695	chr10	-	5081	12	NNC	ENSMUSG00000032788.16	novel	5124	11	NA	NA	-9	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	104.094203997077	961	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCAGTTGTCTTAGTGT	6793	False	NA	NA	False	NA	NA	NA	78300818	78272587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78274942_78274983_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
15696	chr2	+	4005	10	NNC	ENSMUSG00000027331.16	novel	839	10	NA	NA	-28	56	intron_retention	FALSE	canonical	1	2	junction_7	168.138244120136	1291	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATGACACTTCAAAAG	NA	False	NA	NA	False	NA	NA	NA	118644684	118667680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118661349_118661451_118662033_118662109_118664480
15697	chr19	-	4263	34	NNC	ENSMUSG00000035049.5	novel	4340	34	NA	NA	-19	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	73.9673444438634	9	37	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGCCCTGATGAGTGGC	NA	False	NA	NA	False	NA	NA	NA	41884631	41851294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881050_41883666_41883817_41884377
15698	chr12	+	2521	10	NNC	ENSMUSG00000020572.9	novel	4527	11	NA	NA	22	-1759	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	300.321843821829	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGATATTAAACTGTATG	NA	False	NA	NA	False	NA	NA	NA	32870355	32901589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_32870626_32880165_32880323_32883030_32883135_32888393_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
15699	chr16	-	2238	10	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18082	6471	multi-exon	FALSE	non_canonical	0	0	junction_1	0	698	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGACGTGGCAGCGCAC	NA	False	NA	NA	False	NA	NA	NA	38411744	38383213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38383493_38384476_38384661_38393412_38393636_38395164_38395351_38396104_38396187_38402327_38402487_38405535_38405879_38406580_38406771_38408544_38408664_38411271
15701	chrUn_JH584304v1	-	2822	8	Intergenic	novelGene_4616	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	95	junction_2	266.612613569362	173	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGCCAACAATCTTCTG	NA	False	NA	NA	False	NA	NA	NA	60609	52196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_53833_54318_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
15702	chr5	+	2146	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	45	2	-7	-2	multi-exon	FALSE	canonical	3	507	junction_4	39.7106723690244	1159	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTGAGGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	33492897	33530638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
15704	chr19	+	2890	6	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	4367	1	intron_retention	FALSE	canonical	3	733	junction_3	57.9378977871997	2	55	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTGTGATTTTCAGA	4436	False	NA	NA	False	NA	NA	NA	46068859	46072901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46069862_46069979_46070116_46070686_46070816_46070954_46071803_46071958_46072283_46072450
15705	chr10	+	2443	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	86	117	85	-117	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	2	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAGAGTAGAAGCTTCC	7075	False	NA	NA	False	NA	NA	NA	60113534	60138256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
15706	chr12	-	3410	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	-13	2	-12	-2	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	262	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGTCTTTTCCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	84497790	84477492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
15707	chr2	+	2931	22	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	4	-19	intron_retention	FALSE	canonical	2	4	junction_20	97.2548374188171	7	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGAATACTAATTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	130266288	130285635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282949_130283084_130283220_130283314_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285100_130285320_130285433
15708	chr2	+	5918	26	ISM	ENSMUSG00000044308.18	ENSMUST00000055758.16	8072	39	55553	25	16830	-25	3prime_fragment	FALSE	non_canonical	3	59	junction_15	23.9544901845145	131	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGTGCAAGATCCT	NA	False	NA	NA	False	NA	NA	NA	69783142	69854332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821970_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736_69848917_69850794_69851005_69851455_69851596_69851886
15709	chr7	-	1977	18	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	2	21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	477.926374431421	9	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACTGAGTCAGTACTTT	NA	False	NA	NA	False	NA	NA	NA	33929712	33901562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920317_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
15710	chr13	+	2040	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	1	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588127	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615139_3615286
15711	chr19	+	2661	6	NNC	ENSMUSG00000024772.10	novel	3353	5	NA	NA	-4	-100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	167.142334553518	589	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGCTGAGGGTGAGAGA	NA	False	NA	NA	False	NA	NA	NA	6326950	6350026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103_6349543_6349938
15712	chr12	+	5078	4	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	22	-12	intron_retention	FALSE	non_canonical	3	81	junction_3	48.0069439421701	14	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATGTTTGATAATATACA	NA	False	NA	NA	False	NA	NA	NA	30634446	30641202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_30637254_30638472_30638567_30638650_30640423_30640797
15713	chr2	-	1228	11	NNC	ENSMUSG00000039671.19	novel	629	6	NA	NA	33	-882	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	220.975134347736	2	13	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGAGAGCGGTGGCGTG	NA	False	NA	NA	False	NA	NA	NA	165740903	165676152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165676209_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687519_165687842_165688026_165688160_165693919_165694069_165717624_165717696_165740835
15714	chr3	+	4901	30	FSM	ENSMUSG00000037400.18	ENSMUST00000029257.15	4868	30	-35	2	-7	0	multi-exon	FALSE	canonical	2	274	junction_18	53.5097310762941	192	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGTTGTTGCATGTTA	NA	False	NA	NA	False	NA	NA	NA	35808247	35910423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35903582_35903714_35909253
15715	chr3	-	1785	12	NNC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	11	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	786.553366496583	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGACTTGAACCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	108352503	108333900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312_108352380_108352433
15716	chr10	-	2902	14	FSM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	10	206	10	2	multi-exon	FALSE	canonical	3	251	junction_4	53.9264236863306	661	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCAGGTGTCCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	81332216	81322288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
15717	chr6	+	3034	9	NIC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	46	intron_retention	FALSE	canonical	3	404	junction_1	59.8789142770642	5	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGTTGTTAAGTCAAGA	NA	False	NA	NA	False	NA	NA	NA	72575584	72584471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72580835_72581848_72581969_72582954_72583478_72583555_72583723_72583856_72584017_72584224
15718	chr1	+	2993	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	4	1176	4	-1176	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	1268	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTGTGTGTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	93682630	93717156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
15719	chr8	-	2103	8	NIC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-75	-243	intron_retention	FALSE	canonical	3	1093	junction_5	117.914531482315	5527	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTATTGTGTCTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	85573638	85568721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571595_85572490_85572695_85572878_85572981_85573336
15720	chr7	-	3098	12	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	-2	-8	intron_retention	FALSE	canonical	3	25	junction_11	126.415816564566	1	68	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCAGACTCCTGACTGAC	NA	False	NA	NA	False	NA	NA	NA	125976595	125969246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125974376_125975845_125975912_125976008_125976218_125976289
15721	chr3	+	2960	4	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	10691	1204	10691	-1204	3prime_fragment	FALSE	canonical	3	470	junction_1	22.4499443206436	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTCTTCCGCATGTTTAT	NA	False	NA	NA	False	NA	NA	NA	104556674	104564574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104556834_104558201_104558346_104560057_104560904_104562763
15723	chr9	-	2829	7	NIC	ENSMUSG00000011114.19	novel	1761	8	NA	NA	-28	-6	intron_retention	FALSE	canonical	3	1638	junction_2	65.5296794505275	84	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCGGTTATTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	37568561	37560483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37565733_37566317_37566389_37568293
15724	chr13	+	2014	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	239	2050	-143	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	1	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588301	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
15725	chr5	+	3095	10	NIC	ENSMUSG00000041264.17	novel	3148	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_3	130.6768703499	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121476	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_149121617_149124517_149124687_149125154_149125284_149130704_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
15726	chr11	+	2347	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	19	-788	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	294.498995182098	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATTGGATTCTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	3914027	3929216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914338_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
15727	chr9	+	2594	12	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	164	-5	intron_retention	FALSE	canonical	3	1100	junction_8	78.2026399334574	667	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAATGAGTTTGGGTTGCT	NA	False	NA	NA	False	NA	NA	NA	59446986	59472387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59470334_59470506_59470598_59471165_59471271_59472103
15728	chr18	+	5063	1	ISM	ENSMUSG00000043991.6	ENSMUST00000051301.6	5957	2	6367	9	6367	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	218	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTACTCACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	36420516	36425579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_36420500_36425600
15729	chr19	-	2236	18	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	2	17	junction_16	364.06014940878	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5070	False	NA	NA	False	NA	NA	NA	53027061	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53013689_53013815_53026944
15731	chr11	-	1945	13	Antisense	novelGene_ENSMUSG00000007739.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCTGCGCAGCTTGCGC	7750	False	NA	NA	False	NA	NA	NA	22953335	22940557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22940855_22944277_22944386_22945927_22946037_22946312_22946456_22947030_22947154_22947601_22947736_22949032_22949175_22950857_22950953_22951359_22951468_22951554_22951694_22952167_22952400_22952814_22952930_22953135
15732	chr10	+	3516	18	ISM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	43	66	3	-10	intron_retention	FALSE	canonical	3	348	junction_6	31.2411094619769	1	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCTTTTTTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93289315	93320670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823
15733	chr3	-	2692	17	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-85	2	intron_retention	FALSE	canonical	1	1	junction_10	184.755877782007	8	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662280	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657646_95657730_95658012_95658078_95658149_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
15734	chr4	+	2658	10	ISM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	47	3295	47	1793	5prime_fragment	FALSE	canonical	3	268	junction_2	29.4496850682191	47	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCTCAAAGGAAGCTTCC	NA	False	NA	NA	False	NA	NA	NA	116414901	116447784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362
15735	chr4	+	2301	9	Fusion	ENSMUSG00000067919.9_ENSMUSG00000067916.10_ENSMUSG00000086147.3_ENSMUSG00000087207.9	novel	2295	5	NA	NA	36	817	multi-exon	TRUE	non_canonical	0	0	junction_5	243.854336643825	1	61	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147056494	147344612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147058404_147058498_147136962_147137048_147140055_147140183_147141715_147142492_147143750_147143835_147264241_147264283_147343420_147344212_147344388
15736	chr17	+	2675	5	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-17	1574	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1603.78388506681	72	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACACCTTTTCTTTCTCCC	NA	False	NA	NA	False	NA	NA	NA	13226865	13236077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227127_13227251_13229406_13229524_13232319_13232500_13233912
15737	chr9	+	3695	18	NNC	ENSMUSG00000032178.15	novel	3606	18	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	584.94620460666	1	101	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTACTTGAGTCTTCATTCA	NA	False	NA	NA	False	NA	NA	NA	21279212	21313099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308761_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
15738	chr8	-	1941	15	NIC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	75	-334	intron_retention	FALSE	canonical	3	3119	junction_12	189.033862099911	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGCTGCAGTACACTTT	NA	False	NA	NA	False	NA	NA	NA	26337647	26307347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26330104_26337606
15739	chr8	-	3239	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	-122	-117	35	6	multi-exon	FALSE	canonical	3	18	junction_16	54.4176930653952	249	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTTTGGAACAATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84467920	84449873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
15740	chr2	+	1362	2	NNC	ENSMUSG00000035772.12	novel	2504	3	NA	NA	160	-209	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCACAAGTATTTTATAAC	NA	False	NA	NA	False	NA	NA	NA	28358261	28360968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_28358271_28359615
15741	chr17	-	2600	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	10	-4	-9	4	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	40	96	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCGTTCGCCCAGTCCC	NA	False	NA	NA	False	NA	NA	NA	47093572	47084828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
15742	chr7	-	1780	16	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	495.430676841428	9	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33929712	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902122_33905006_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
15744	chr16	-	1846	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	-1	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAATAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45974883_45975128
15745	chr16	-	2363	17	NIC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	-21	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	386.355199063957	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCCGTGGCAGACGTTT	NA	False	NA	NA	False	NA	NA	NA	3895660	3857844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886526_3886886_3895556
15746	chr5	-	4647	17	FSM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	-20	-923	-6	-4	multi-exon	FALSE	canonical	3	116	junction_14	28.9242005075335	259	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCTCTTGGCTCTGTTTG	6124	False	NA	NA	False	NA	NA	NA	143098755	142976651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084261_143098653
15747	chr11	+	2311	11	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	76	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCTGCGTCCCGGCAGC	NA	False	NA	NA	False	NA	NA	NA	106672371	106679320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673083_106673293_106673522_106674788_106674845_106674926_106674987_106675237_106675350_106675704_106675879_106675961_106676116_106676216_106676367_106676612_106676951_106677794_106677899_106679096
15749	chr14	-	3250	17	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	44.1076453123492	20	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	123220661	123156382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
15752	chr9	-	4129	11	FSM	ENSMUSG00000032316.9	ENSMUST00000215109.2	4130	11	4	-3	-3	0	multi-exon	FALSE	canonical	3	243	junction_10	41.0098768591177	20	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9811	False	NA	NA	False	NA	NA	NA	57672400	57657991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57668324_57668998_57669151_57672356
15753	chr16	-	2565	16	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	1573	7	NA	NA	38	11	multi-exon	FALSE	canonical	3	15	junction_9	408.307019560309	8	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCGCCTAATCATGCCTC	6304	False	NA	NA	False	NA	NA	NA	38370546	38318697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355024_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
15754	chr19	-	3962	25	NIC	ENSMUSG00000025159.9	novel	2810	26	NA	NA	2	979	intron_retention	FALSE	canonical	3	137	junction_9	30.2630825704631	1	101	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGCCAAACTATCTGAAG	NA	False	NA	NA	False	NA	NA	NA	41969567	41934251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41935543_41936128_41936186_41936654_41936756_41937893_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
15755	chr12	+	2765	9	NIC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-14	0	intron_retention	FALSE	canonical	1	279	junction_3	170.872028138019	57	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCATACAGATGAAATGGC	NA	False	NA	NA	False	NA	NA	NA	59060164	59075185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59068523_59071788_59071900_59073640_59073700_59074522
15756	chr6	+	1851	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	497	93	-8	-93	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGCTTGGTGTGTTTTTC	5107	False	NA	NA	False	NA	NA	NA	85428992	85445364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
15757	chr17	-	2576	4	Intergenic	novelGene_65	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.471404520791032	5	58	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGTTCCTGGGTGTCACG	NA	False	NA	NA	False	NA	NA	NA	17728383	17725196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17725632_17725960_17726149_17726242_17726283_17726470
15758	chr17	+	3148	2	Intergenic	novelGene_150	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGGACCAAGCACGCAC	5223	False	NA	NA	False	NA	NA	NA	35215711	35219764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_35218444_35219348
15759	chr17	+	3559	8	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGCTGTCTGCTACTGG	7832	False	NA	NA	False	NA	NA	NA	32529565	32540137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32529645_32529925_32530068_32531258_32533118_32534415_32534463_32534628_32535637_32536035_32536331_32537733_32537786_32540060
15760	chr11	-	3355	3	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	11	-2	intron_retention	FALSE	canonical	3	1022	junction_2	6.5	4	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCCCCAGAGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	120534519	120530243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120531175_120531967_120532348_120532475
15762	chr11	-	3443	24	NIC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	-154	-6	intron_retention	FALSE	canonical	3	102	junction_18	23.4016463318224	295	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	NA	False	NA	NA	NA	98619814	98595422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610
15764	chr11	-	3546	6	NIC	ENSMUSG00000018442.14	novel	3666	7	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	227.255274966281	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCTTGTATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	70910083	70898267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70909137_70909204_70909969
15765	chr14	+	2299	13	Antisense	novelGene_ENSMUSG00000077797.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	234	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGGGCCGGGCCGAGTGC	1516	False	NA	NA	False	NA	NA	NA	30734395	30741018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30734590_30734677_30734749_30735125_30735282_30735385_30735751_30736007_30736633_30736860_30736984_30737231_30737345_30738281_30738414_30738785_30738864_30739012_30739127_30739234_30739369_30739762_30739824_30740885
15766	chr2	+	2337	17	NNC	ENSMUSG00000002455.15	novel	3048	21	NA	NA	-14	-5443	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_10	95.4914713141964	1	43	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAAAGAACCCTGGGCTA	2534	False	NA	NA	False	NA	NA	NA	181243151	181292001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278767_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889
15767	chr6	+	3359	1	FSM	ENSMUSG00000030103.12	ENSMUST00000204550.2	2620	1	-250	-489	-250	489	mono-exon	FALSE	NA	NA	NA	NA	NA	2	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGTACACAGAGCTAAG	NA	False	NA	NA	False	NA	NA	NA	108639756	108643115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_108639800_108643100
15768	chr8	+	3959	14	FSM	ENSMUSG00000031785.17	ENSMUST00000179619.9	3616	14	-361	18	-247	0	multi-exon	FALSE	canonical	3	57	junction_6	9.58857801774418	225	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAGTTGCCCGTCTCAG	318	False	NA	NA	False	NA	NA	NA	95703373	95740827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95704046_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
15772	chrX	-	2164	13	NNC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	441	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	513.994379562872	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	100128517	100122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100122983_100123058_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426
15773	chr19	-	6081	5	Antisense	novelGene_ENSMUSG00000025019.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	95	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGGACCTTGGGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	41575715	41471972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41472040_41534313_41534445_41540885_41541174_41544044_41544140_41570215
15774	SIRV7	-	2489	5	FSM	SIRV7A	SIRV703	2498	5	0	9	0	-4	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	1	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCGTAATTAGTGTTAATA	NA	False	NA	NA	False	NA	NA	NA	147918	1009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
15776	chr1	-	3130	20	Antisense	novelGene_ENSMUSG00000102970.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGCGCGCTGTCAGGCAG	9319	False	NA	NA	False	NA	NA	NA	191353798	191307874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_191308062_191314508_191314640_191315289_191315441_191318637_191318774_191326538_191326584_191328280_191328483_191328996_191329126_191334360_191334474_191336917_191337052_191338230_191338329_191339929_191340171_191342474_191342613_191343968_191344176_191345125_191345320_191345748_191345855_191346690_191346758_191347810_191347944_191349921_191349938_191351713_191351892_191353274
15777	chr6	-	2943	4	NIC	ENSMUSG00000030127.16	novel	795	7	NA	NA	277	-10	intron_retention	FALSE	canonical	3	1638	junction_1	105.325949108259	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACAAAAATGCCAGGAAC	NA	False	NA	NA	False	NA	NA	NA	124941893	124935788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124937160_124938120_124939410_124939584_124939661_124941686
15778	chr9	+	2642	8	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	204.050713984419	22	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824662	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868240_77883090_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
15779	chr5	+	3792	15	FSM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	-42	11	27	3	multi-exon	FALSE	canonical	3	389	junction_14	43.2925501438664	301	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTCTAAGGTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	34731174	34789641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
15780	chr10	-	2874	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	6	0	6	0	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	493	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTGGTAGCATTACA	NA	False	NA	NA	False	NA	NA	NA	57408620	57391869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
15781	chr5	-	3787	3	Genic_Genomic	ENSMUSG00000105044.2	novel	645	1	NA	NA	-2980	1497	multi-exon	FALSE	canonical	3	110	junction_1	72.5	1	91	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGTGCTCAACAATTAAT	NA	False	NA	NA	False	NA	NA	NA	109984991	109979869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_109983468_109984614_109984676_109984863
15782	chr1	+	4226	24	FSM	ENSMUSG00000036104.13	ENSMUST00000037649.6	4243	24	15	2	-1	-2	multi-exon	FALSE	canonical	3	104	junction_1	17.6995509005001	183	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTGGACTTGTGGCT	3044	False	NA	NA	False	NA	NA	NA	127796524	127871603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127796567_127796661_127796718_127801816_127801893_127816892_127817026_127818754_127818834_127829315_127829436_127831408_127831575_127837587_127837688_127843375_127843458_127845957_127846027_127847304_127847379_127852464_127852558_127853011_127853179_127855196_127855287_127855685_127855859_127858126_127858182_127858443_127858816_127862153_127862292_127865074_127865303_127865725_127865823_127865934_127866039_127866311_127866428_127866782_127866886_127870110
15783	chr10	-	3401	10	NNC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	118.633682473756	471	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGAAGTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	127047454	127032935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127035014_127035117_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
15786	chr1	-	3478	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	52	-20	-1	20	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	2	141	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGCCACAGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	181669892	181642879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
15787	chr9	+	3936	19	NNC	ENSMUSG00000025898.7	novel	4446	18	NA	NA	-10	58	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	65.780686872608	192	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTAACTTACTTTATAT	-1	True	NA	NA	False	NA	NA	NA	3404077	3479294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816_3477963_3478044
15788	chr2	-	1903	1	NIC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	630	262	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGTGAACTAGCCTCCTA	NA	False	NA	NA	False	NA	NA	NA	130125705	130123802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130123800_130125700
15790	chr2	+	2569	17	NNC	ENSMUSG00000027067.17	novel	2721	17	NA	NA	5	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	518.967951202191	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATAAAGGGAAATGACTT	NA	False	NA	NA	False	NA	NA	NA	84867803	84877427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871063_84871311_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
15791	chr10	+	2709	7	NIC	ENSMUSG00000040034.16	novel	1286	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	1165	junction_4	68.757221842913	95	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAATGTTGGCTTGCTGCT	NA	False	NA	NA	False	NA	NA	NA	7543271	7554645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7543446_7543765_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
15794	chr10	+	1677	5	Antisense	novelGene_ENSMUSG00000019773.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	927	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGCCGCAAAACTCGGGC	NA	False	NA	NA	False	NA	NA	NA	5749157	5755333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5749821_5750251_5750435_5751150_5751243_5751868_5752531_5755256
15795	chrX	-	3619	7	NIC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	-12	-167	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	90.1432501940969	217	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTTGTGTGAATAT	NA	False	NA	NA	False	NA	NA	NA	156381659	156349109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_156351813_156351929_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
15796	chrUn_JH584304v1	-	3107	5	Intergenic	novelGene_4669	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	111	junction_2	286.718067097279	1	87	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACTACCATAGCT	NA	False	NA	NA	False	NA	NA	NA	58940	52677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55249_55464_55702_56985_57152_58563
15798	chr6	-	2901	8	NIC	ENSMUSG00000029922.16	novel	2992	8	NA	NA	3	-6	combination_of_known_junctions	FALSE	canonical	3	157	junction_7	1165.4745726921	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGTCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39396998	39374743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396773
15799	chr10	-	2983	16	NNC	ENSMUSG00000020130.10	novel	3752	17	NA	NA	-1	-589	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	122.086235460386	3	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTAGTGTTTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	115087373	115034365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069058_115076753_115076853_115087286
15801	chr10	-	1853	12	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	425.106073296676	5	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	85793660	85774500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_85774984_85777762_85777883_85778351_85778463_85779201_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
15802	chr16	+	2335	3	Genic_Genomic	ENSMUSG00000092029.2	novel	661	1	NA	NA	-185	1808	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAAAAAGATAA	NA	False	NA	NA	False	NA	NA	NA	61197433	61200087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_61198617_61198673_61199688_61199949
15804	chr1	-	4440	14	NIC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	1660	11	intron_retention	FALSE	canonical	3	144	junction_7	19.9428176627918	2	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAAAACCAAAATGTTGT	NA	False	NA	NA	False	NA	NA	NA	151287070	151244103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151283387_151286521
15806	chr9	-	3120	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	0	-171	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	76.1302976627717	1	41	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGACTTTATGGAGACT	6411	False	NA	NA	False	NA	NA	NA	44272934	44259395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270633_44270908_44271045_44271135_44271281_44272737
15807	chr12	-	3506	18	NNC	ENSMUSG00000020986.14	novel	2529	18	NA	NA	3	-421	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	210.15428506079	1	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCTTTCTCTGTTTTCTT	2681	False	NA	NA	False	NA	NA	NA	59058800	59005589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59053775_59054026_59058669
15808	chr11	-	3605	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	55	6	-5	-6	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	862	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAACTATTATCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	70910074	70898273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
15810	chr9	+	2362	12	NNC	ENSMUSG00000001774.9	novel	5789	11	NA	NA	-68	1987	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	355.677400495365	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTTTCTGTCATGTGTT	8472	False	NA	NA	False	NA	NA	NA	18203527	18225296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_18203757_18206595_18206646_18210869_18210992_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
15811	chr14	-	2357	13	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-16	0	intron_retention	FALSE	canonical	3	775	junction_10	84.7342250149778	5	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741017	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739824_30740885
15814	chr4	-	3375	11	Antisense	novelGene_ENSMUSG00000092862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.6	8	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCTGTCACCTGGTCAC	NA	False	NA	NA	False	NA	NA	NA	41001032	40970995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40971063_40976356_40977341_40984890_40985049_40986689_40986770_40988620_40988726_40990787_40990863_40991741_40991883_40993757_40993859_40993962_40994179_40996812_40996911_40999682
15815	chr5	+	2476	6	NIC	ENSMUSG00000014956.16	novel	5962	8	NA	NA	50	-3	intron_retention	FALSE	canonical	3	48	junction_5	515.46545956058	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGTCTGAGTGATTATTC	3124	False	NA	NA	False	NA	NA	NA	32616615	32650097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32648297
15816	chr11	-	3303	20	Antisense	novelGene_ENSMUSG00000098942.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.446593756538872	5	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGTTTTCAAGCAAACGC	NA	False	NA	NA	False	NA	NA	NA	46031013	45946868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_45947038_45951749_45951834_45955836_45955910_45984689_45984767_45990677_45990755_46003581_46003777_46004449_46004514_46009244_46009317_46012244_46012414_46013919_46014003_46015832_46015974_46018071_46018249_46019610_46019699_46022445_46022643_46025250_46025359_46027069_46027289_46028190_46028268_46028365_46028476_46029663_46030604_46030830
15817	chr4	-	3428	7	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	2	32	junction_1	505.318628853782	21	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000076	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134943767_134944408_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
15818	chr11	-	2627	13	NIC	ENSMUSG00000000384.16	novel	2324	13	NA	NA	250	-6	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	179.453723530299	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACCACATGGGCCACTGG	NA	False	NA	NA	False	NA	NA	NA	6575772	6565604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575383
15819	chr6	+	2455	6	NIC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	-76	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	536.508862927725	13	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGCTGGCTTTGTCGTTT	2588	False	NA	NA	False	NA	NA	NA	122285602	122294634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122293008_122293136_122293286
15820	chr6	+	3837	28	Antisense	novelGene_ENSMUSG00000099587.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	113	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATAGGGCAGGATACGC	8351	False	NA	NA	False	NA	NA	NA	125145030	125168531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_125145283_125145552_125145716_125145828_125145952_125146776_125146959_125147091_125147180_125147690_125147787_125147880_125148056_125148358_125148517_125148598_125148722_125148794_125148915_125151236_125151322_125153105_125153198_125153623_125153795_125154296_125154515_125154770_125154888_125156200_125156370_125156472_125156566_125156658_125156792_125157940_125158140_125160876_125161025_125161191_125161313_125161394_125161526_125162656_125162800_125163061_125163247_125163718_125163776_125164039_125164118_125166726_125166870_125168457
15822	chr17	-	3180	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	-21	2	-21	-2	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	1	94	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCATGTGCCTGTGGGGTG	NA	False	NA	NA	False	NA	NA	NA	36280674	36267712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
15823	chr7	+	5409	4	NNC	ENSMUSG00000030523.19	novel	441	5	NA	NA	4	2431	intron_retention	FALSE	non_canonical	0	0	junction_3	416.790115045931	149	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGCAAGTATGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	63835210	63854264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63847024_63847105_63848910_63850796_63850981
15824	chr13	-	1678	13	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-24	-105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	668.459729319742	2	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATCTTTTTATTGATTGA	NA	False	NA	NA	False	NA	NA	NA	97334827	97312943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97325451_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
15825	chr18	+	4875	6	NIC	ENSMUSG00000024581.14	novel	826	8	NA	NA	-617	-3	intron_retention	FALSE	canonical	3	194	junction_3	21.0580151011438	1	89	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGGTGTCAGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	63118113	63132518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63128164_63129887
15826	chr6	-	2342	8	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	-10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1001.62453758168	1	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTTGTCTCATGACT	NA	False	NA	NA	False	NA	NA	NA	148847864	148822560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148822728_148822870_148823967_148824049_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
15827	chr15	-	3164	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.043742863698	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTTTGAGCTATAATGT	NA	False	NA	NA	False	NA	NA	NA	83033524	83010180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016867_83017389_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
15828	chr6	-	3023	15	NNC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	8	-971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	419.80141685306	1	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGGGAATTTGTTTAAAGCA	NA	False	NA	NA	False	NA	NA	NA	148113511	148081547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148103038_148104559_148104624_148106273_148106383_148107597_148107709_148108030_148108174_148113467
15830	chr17	-	2896	11	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	344.305155349147	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGGAAATGTTCACATTT	NA	False	NA	NA	False	NA	NA	NA	29226925	29189916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29194792_29194911_29196517_29196576_29198176_29198280_29201005_29201161_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
15833	chrX	-	2267	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	73	-2	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_11	409.125251083797	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAAACCTGTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	100128885	100122817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128759
15834	chr2	-	551	1	Intergenic	novelGene_2841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTTCAAATCCTAGCAAC	NA	False	NA	NA	False	NA	NA	NA	176567501	176566950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_176567000_176567500
15835	chr8	+	2653	9	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	142	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	449.649585788756	15	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTGTTAAACTGTTGTG	5983	False	NA	NA	False	NA	NA	NA	107330916	107396862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107331040_107375632_107375835_107388572_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107395516_107395830
15836	chr2	+	2477	9	NNC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	31	-441	intron_retention	FALSE	canonical	0	0	junction_3	341.549021920719	1	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164676260	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164677642_164678346_164678432_164678905_164679002_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
15837	chrX	-	3530	20	NNC	ENSMUSG00000025059.17	novel	4245	20	NA	NA	57	-658	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	36.6776781920874	13	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCATTTCTCATTTCCAG	NA	False	NA	NA	False	NA	NA	NA	84820173	84746200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780969_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
15838	chrX	-	2241	17	NIC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_15	385.863945419885	1798	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	47602313	47563820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47593686_47593830_47602112
15839	chr1	-	2901	8	FSM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	-67	-270	-67	270	multi-exon	FALSE	canonical	3	189	junction_7	84.2663415993041	16	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAACTCTTCGTAATTGG	NA	False	NA	NA	False	NA	NA	NA	13197454	13183410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333
15840	chr9	-	3097	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	2	-159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	78.7458358687408	25	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGACTTTCCAGGTGTTT	6416	False	NA	NA	False	NA	NA	NA	44272929	44259383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260262_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
15842	chr2	+	1793	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	32	-712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1169.66059595176	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATACTGTCGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121244395	121268456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121259967_121262159_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
15843	chr1	+	3102	14	NNC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	0	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	268.867557197981	4	102	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTATTGTTTAGATATTA	NA	False	NA	NA	False	NA	NA	NA	93406714	93437433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434_93436570_93436668
15844	chr11	+	2676	12	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3967	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2838.66157496629	1	98	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAAGAAAACTTCATCT	NA	False	NA	NA	False	NA	NA	NA	55360559	55391697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386976_55387072_55388476_55388589_55388738_55388868_55389387_55389494_55390284
15845	chr15	+	2083	7	NNC	ENSMUSG00000058655.10	novel	1548	9	NA	NA	-4052	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	306.574986295722	15	66	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTAATGTTGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	101990406	102005606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997123_102004253
15846	chr11	-	2721	17	NNC	ENSMUSG00000020717.20	novel	2977	16	NA	NA	-9022	-23	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	591.394270849617	9	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACGAACTATTTCCCAAT	402	False	NA	NA	False	NA	NA	NA	106615242	106552645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574445_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106614494_106614704_106615196
15847	chr2	+	2414	4	Antisense	novelGene_ENSMUSG00000078868.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTATAGGGAGGAAGTTG	4613	False	NA	NA	False	NA	NA	NA	177005565	177016186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177007702_177008855_177008916_177009122_177009251_177016096
15848	chr10	-	2568	16	NNC	ENSMUSG00000020076.8	novel	2535	15	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_12	88.6264570480446	447	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8138	False	NA	NA	False	NA	NA	NA	62486965	62451793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62477815_62477881_62478554_62478734_62479075_62479152_62482692_62482981_62486803
15849	chr11	-	3631	18	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	11	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	295.208506455585	2	140	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	NA	False	NA	NA	NA	40624232	40592221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40592459_40592802_40593686_40594608_40594760_40596714_40596896_40598176_40598277_40598391_40598545_40598841_40599110_40600734_40601104_40604808_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614406_40619215_40619334_40619948_40620048_40624140
15850	chr6	-	2955	17	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	227.110071055865	1	78	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	4	True	NA	NA	False	NA	NA	NA	6217134	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095148_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131758_6180966_6181114_6191263_6191318_6216995
15851	chr11	+	2816	1	FSM	ENSMUSG00002076889.1	ENSMUST00020182364.1	80	1	-1751	-985	-1751	985	mono-exon	FALSE	NA	NA	NA	NA	NA	121	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97918487	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97918500_97921300
15852	chr9	-	4628	27	ISM	ENSMUSG00000032570.18	ENSMUST00000038118.15	4876	28	539	4	70	1	3prime_fragment	FALSE	canonical	3	363	junction_24	33.7174124945175	230	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGACTTCCCAGTTAGT	NA	False	NA	NA	False	NA	NA	NA	105371793	105288560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899_105345017_105347235_105347347_105371613
15853	chr2	-	306	1	NIC	ENSMUSG00000027361.16	novel	4153	9	NA	NA	13124	-2113	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTAAAGTTACTATTTC	8567	False	NA	NA	False	NA	NA	NA	126492086	126491780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_126491800_126492100
15854	chr11	-	1993	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1334.5135424797	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676346_106677757_106677901_106679098
15855	chr11	+	3387	12	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	125	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTCCTCCACCCCACAA	NA	False	NA	NA	False	NA	NA	NA	106544794	106615261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106545991_106570376_106570436_106573704_106573788_106575034_106575162_106575786_106576077_106579604_106579878_106581761_106582011_106586579_106586856_106587877_106588180_106590416_106590714_106605828_106606013_106615210
15856	chr2	+	3357	3	Antisense	novelGene_ENSMUSG00000027547.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAGGGGGAAGGGAGG	500	False	NA	NA	False	NA	NA	NA	168590958	168607303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_168592177_168596870_168598723_168607016
15857	chr1	+	3577	15	NIC	ENSMUSG00000026192.14	novel	2845	16	NA	NA	-2	-227	intron_retention	FALSE	canonical	3	576	junction_4	38.8926439716052	35	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTGTGGTTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	71596335	71618563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71617101_71617710
15858	chr16	-	3697	22	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	0	-11	combination_of_known_splicesites	FALSE	canonical	1	4	junction_12	36.8186091171878	207	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTCATAGTTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	10994205	10954466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
15859	chr2	+	2746	18	NNC	ENSMUSG00000027469.17	novel	3483	18	NA	NA	23	-633	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	195.827496293289	6	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTTCAGTCACAGTGT	2748	False	NA	NA	False	NA	NA	NA	152689937	152735941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734233_152735579
15860	chr10	+	3640	8	Antisense	novelGene_ENSMUSG00002076354.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAGAGTCTCTTCGATCC	3915	False	NA	NA	False	NA	NA	NA	128395180	128401770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128395220_128395299_128396163_128396526_128396605_128396785_128396852_128398695_128398791_128398936_128399005_128399092_128399201_128399447
15861	chr2	+	4308	9	NNC	ENSMUSG00000039515.12	novel	3738	9	NA	NA	23	-26	intron_retention	TRUE	canonical	0	0	junction_6	176.726306757087	6	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTAAAGCCTCTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	30306073	30337790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30328626_30328722_30329777_30333301_30333410_30336388
15862	chr2	+	3935	15	FSM	ENSMUSG00000027395.16	ENSMUST00000103205.11	3998	15	60	3	28	-3	multi-exon	FALSE	canonical	3	224	junction_10	36.5564282853179	5	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATATGTGTGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	128942974	128968511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
15865	chr4	-	3152	5	NNC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	3788	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	45.0499722530436	460	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTTTGTTGTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	144131199	144118247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907_144130021_144130508
15866	chr15	+	2960	5	FSM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	6	-6	5	0	multi-exon	FALSE	canonical	3	16	junction_1	32.962099447699	470	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	NA	NA	NA	76763514	76776595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76774206
15867	chr1	-	3486	19	NIC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	78	-11	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	44.9557052230166	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAGTAGCATTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	151304109	151243460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
15868	chr9	+	5722	22	NNC	ENSMUSG00000032293.9	novel	5770	22	NA	NA	50	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	66.80282015039	1	232	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTTGACTCGTTGTGTT	2676	False	NA	NA	False	NA	NA	NA	54771122	54819810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54771181_54772590_54772681_54788630_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
15869	chr19	-	2144	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	-93	7	-93	-7	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAATGGAGTTTGTGAT	8224	False	NA	NA	False	NA	NA	NA	43513137	43488197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
15870	chrX	-	4378	17	Antisense	novelGene_ENSMUSG00002076902.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGAGCTAGCGCTGGAA	1799	False	NA	NA	False	NA	NA	NA	76705778	76554731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_76554874_76628397_76628466_76677151_76677245_76684997_76685111_76687013_76687161_76689811_76690076_76691397_76691527_76691851_76692000_76692259_76692323_76692427_76692525_76693476_76693537_76693971_76694097_76696369_76696443_76696817_76696946_76699009_76699173_76702301_76702409_76703320
15871	chr19	-	3081	2	NNC	ENSMUSG00000092274.4	novel	3004	2	NA	NA	0	5	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAATTGTCATGGCTGTT	10001	False	NA	NA	False	NA	NA	NA	5895506	5892329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5895190_5895285
15873	chr10	-	2312	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	intron_retention	FALSE	canonical	3	1501	junction_10	175.125926121748	3	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358255	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127356041_127356206_127356287_127356786_127356985_127358156
15874	chr7	+	3400	12	FSM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	5	0	5	0	multi-exon	FALSE	canonical	3	550	junction_9	38.261820946588	948	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTAGTGCCTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	127503258	127509393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
15875	chr10	-	4930	33	Antisense	novelGene_ENSMUSG00000034560.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	64	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTCCACGGCCATCGCCG	NA	False	NA	NA	False	NA	NA	NA	83431517	83379920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_83379964_83382644_83382791_83385327_83385372_83385454_83385527_83386125_83386172_83386742_83386810_83390594_83390681_83391436_83391478_83391874_83391978_83392663_83392786_83394459_83394585_83394680_83394808_83396227_83396391_83400274_83400400_83405829_83405956_83407214_83407325_83407954_83408104_83408220_83408301_83409638_83409745_83410303_83410422_83411878_83412048_83412536_83412692_83415343_83415417_83416116_83416226_83417120_83417261_83419121_83419227_83421680_83421745_83422493_83422583_83424018_83424169_83426154_83426251_83426849_83427046_83427550_83427651_83430032
15877	chr15	-	3920	16	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	409.277607498871	1	169	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGATGTGGCTATGATC	NA	False	NA	NA	False	NA	NA	NA	96953837	96892709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908241_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
15878	chr14	+	3526	8	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	430.220541450213	19	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCTTAAACATACA	NA	False	NA	NA	False	NA	NA	NA	8348819	8357589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349025_8349570_8349777_8350612_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
15879	chr10	-	3672	20	Antisense	novelGene_ENSMUSG00000036875.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	92	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGAGAGCGGGCAGCCGT	NA	False	NA	NA	False	NA	NA	NA	62809481	62782856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_62782949_62784961_62785142_62786510_62786697_62789960_62790117_62791099_62791223_62792705_62792927_62793829_62793948_62794672_62794835_62794950_62795147_62795985_62796220_62797197_62797501_62798172_62798282_62799578_62799809_62800678_62800873_62802193_62802285_62802378_62802582_62803429_62803520_62805552_62805738_62807622_62807770_62809029
15881	chrX	-	2286	11	NNC	ENSMUSG00000031297.15	novel	2717	11	NA	NA	-59	-5	intron_retention	FALSE	canonical	0	0	junction_10	438.582717397756	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTGTAAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	100127846	100122832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127531_100127776
15882	chr10	+	2340	15	NIC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	3	-7	intron_retention	FALSE	canonical	3	75	junction_13	593.978045358031	935	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCATGGGATGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	111309144	111332738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111330911_111331237_111331900
15883	chr2	-	6319	16	FSM	ENSMUSG00000027340.16	ENSMUST00000028815.15	6364	16	45	0	45	0	multi-exon	FALSE	canonical	3	134	junction_8	16.3644601363918	136	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTGTCATTTGCCTC	7644	False	NA	NA	False	NA	NA	NA	131986983	131894415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_131898822_131900119_131900216_131902582_131902721_131903978_131904109_131907283_131907390_131908637_131908786_131913230_131913388_131913836_131913958_131917418_131917601_131919348_131919414_131920332_131920422_131931015_131931174_131933132_131933250_131936061_131936161_131943391_131943647_131986931
15884	chr12	+	2083	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	45	-61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1989.8006041924	2	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTTGAACTTTCATG	NA	False	NA	NA	False	NA	NA	NA	24758284	24764084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759081_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
15886	chr1	+	5260	7	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	-1190	-1	intron_retention	FALSE	canonical	0	0	junction_1	200.032219626961	6	139	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCCTGACTGTGTGGTA	9187	False	NA	NA	False	NA	NA	NA	87635872	87648228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87637576_87637621_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
15887	chr6	+	6111	44	NNC	ENSMUSG00000038759.16	novel	6412	43	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_30	102.964101868862	2	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAAATGTGTGGTCATT	NA	False	NA	NA	False	NA	NA	NA	35154559	35224530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35181629_35181663_35182259_35182470_35185015_35185116_35185729_35185868_35187762_35187953_35189661_35189783_35191252_35191335_35191580_35191746_35192008_35192134_35196619_35196735_35200447_35200598_35201080_35201153_35201456_35201615_35202118_35202200_35202724_35202917_35204237_35204406_35204637_35204699_35207438_35207588_35209332_35209525_35210270_35210393_35211612_35211752_35213700_35213828_35215879_35215957_35217943_35218073_35218253_35218384_35220753_35220921_35221631_35221756_35222182_35222312_35222956_35223016_35224195
15888	chrX	-	2125	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_8	300.613786924168	5	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGGTTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	47602289	47563823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574292_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
15889	chr4	-	2888	9	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	521.535713062874	1	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTTTTTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	141327235	141303370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317293_141322540_141322791_141323205_141323260_141327158
15891	chr12	+	1706	2	Antisense	novelGene_ENSMUSG00000066632.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGGATGGAAGATTTAA	NA	False	NA	NA	False	NA	NA	NA	10948553	10950313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_10948843_10948896
15892	chr8	+	5127	17	FSM	ENSMUSG00000001472.18	ENSMUST00000211932.2	5002	17	-127	2	-24	2	multi-exon	FALSE	canonical	3	455	junction_12	41.7738984744062	292	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAACATGGTGATATGG	NA	False	NA	NA	False	NA	NA	NA	124100467	124130547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363
15893	chr6	+	2503	6	NIC	ENSMUSG00000053119.12	novel	347	4	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	151.398282685108	41	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATATTATGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	71521343	71558563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_71521430_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
15895	chr10	-	2450	10	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	329.940436076006	447	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5266	False	NA	NA	False	NA	NA	NA	62322516	62291050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62291463_62291546_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
15896	chr2	+	3173	16	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	11	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	78.7907495980475	23	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATATGTGTGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	128942925	128968511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133_128967484_128968294
15897	chr1	-	2289	13	NNC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	22	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	705.897183259243	30	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGATGGTTTTTCTTCG	NA	False	NA	NA	False	NA	NA	NA	125363262	125320644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125320950_125321201_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
15899	chr2	-	3206	11	NIC	ENSMUSG00000039536.17	novel	2976	12	NA	NA	29	1	intron_retention	FALSE	canonical	3	75	junction_7	60.0473979452899	76	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTGTTAATTTATTT	NA	False	NA	NA	False	NA	NA	NA	166838156	166790191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
15900	chr11	+	2542	23	NIC	ENSMUSG00000059439.16	novel	3810	28	NA	NA	1380	-19047	combination_of_known_junctions	FALSE	canonical	1	5	junction_3	36.454800497861	22	26	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	4903	False	NA	NA	False	NA	NA	NA	85245417	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_85245488_85245713_85245802_85250450_85250506_85251849_85251889_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
15901	chr9	+	2167	12	NNC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	514.023763800922	40	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	25163943	25219862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209133_25212730_25212834_25215012_25215149_25217421_25217562_25218808
15902	chr14	-	2337	13	NIC	ENSMUSG00000042354.8	novel	1765	15	NA	NA	-1	0	intron_retention	TRUE	canonical	3	108	junction_8	233.342544461047	2	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30740971	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
15903	chr3	+	3103	13	NIC	ENSMUSG00000042626.14	novel	2617	12	NA	NA	1	2	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	152.973558898988	438	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTGGAAAGTCTGATT	NA	False	NA	NA	False	NA	NA	NA	89328949	89337336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89329056_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
15904	chrX	+	2314	7	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-17	2	intron_retention	FALSE	canonical	3	39	junction_5	541.181936957331	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAGACTTGTTGGCATG	NA	False	NA	NA	False	NA	NA	NA	72235795	72246528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241992_72245455_72245552_72245645
15906	chr6	-	2667	1	Genic_Genomic	ENSMUSG00000004446.13	novel	NA	NA	NA	NA	-2521	-1805	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAGTGGCCTGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	120877050	120874383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_120874400_120877000
15907	chr1	-	2551	20	NNC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	316.082662143116	4	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTAAAAACACTGATAT	NA	False	NA	NA	False	NA	NA	NA	63215828	63182767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187683_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196431_63198902_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
15908	chr19	+	2296	19	Antisense	novelGene_ENSMUSG00000098730.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGAAAGAGCAGAGTGC	NA	False	NA	NA	False	NA	NA	NA	52979613	53020531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_52980145_52983851_52983953_52984686_52984757_52985330_52985504_52986303_52986368_52987576_52987643_52990903_52990982_52991108_52991171_52992194_52992246_52993194_52993284_52994584_52994796_52996300_52996383_52998497_52998594_53000195_53000341_53000619_53000714_53001832_53001934_53003040_53003106_53013689_53013815_53020439
15909	chr7	+	3359	3	NIC	ENSMUSG00000025508.14	novel	964	5	NA	NA	-18	-11	intron_retention	FALSE	canonical	3	11307	junction_1	108	18	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATCTTGAGTGGCCTT	2398	False	NA	NA	False	NA	NA	NA	141027563	141031251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_141027621_141027820_141031016_141031144
15910	chr14	-	2199	10	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1340.86518043343	10	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGCTTTTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	63746217	63729799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63741177_63741824_63746158
15911	chr5	+	1669	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-17	-408	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	739.320333519616	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTTCAAGCCATATTT	NA	False	NA	NA	False	NA	NA	NA	45650828	45669625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664506_45666810_45666860_45668449_45668560_45669222
15912	chr1	-	2498	4	NIC	ENSMUSG00000043716.14	novel	838	6	NA	NA	0	-5	intron_retention	FALSE	canonical	3	6432	junction_1	336.342418113182	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATGTGTCGGAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	16174626	16171523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16172824_16172915_16173054_16173391_16173559_16173733
15914	chr11	+	2232	14	NIC	ENSMUSG00000020430.13	novel	2923	15	NA	NA	-29	-788	intron_retention	FALSE	canonical	3	864	junction_11	100.760070047496	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATTGGATTCTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	3913945	3929216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
15915	chr15	+	2217	21	NNC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	15	22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	331.615511549143	4	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCGGACAGACTATTTAA	NA	False	NA	NA	False	NA	NA	NA	89239980	89255788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89252661_89252863_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
15916	chr12	+	3334	23	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-8	-121	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	200.022395440326	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGCTCCCCAATTCTTT	3973	False	NA	NA	False	NA	NA	NA	83679017	83728673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83682175_83682256_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
15917	chr10	-	3829	8	NIC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	-4	-11	intron_retention	FALSE	canonical	3	330	junction_1	40.7425966731806	2	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTAAGTCATTCACAGAA	NA	False	NA	NA	False	NA	NA	NA	127047458	127032946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127035014_127035181_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
15918	chr14	-	2376	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-8	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1828.41076826297	1	80	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCTGTACTTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	36857219	36842773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844087_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
15919	chr13	-	2685	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-17	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	429.968822368107	1	63	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTACTTGGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	6698778	6631210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631623_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655758_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675241_6685956_6686035_6698606
15920	chr6	+	2889	21	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-22	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	238.064964873036	8	46	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTACTGTCGTGGTGGAG	6	True	NA	NA	False	NA	NA	NA	28480405	28888820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480474_28480566_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28886412_28886540_28888233
15921	chr3	-	2318	18	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-2	2	combination_of_known_junctions	FALSE	canonical	1	170	junction_16	123.993944488818	12	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662152	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661683_95661828_95662069
15922	chr11	+	2156	11	ISM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	688	1	124	-1	3prime_fragment	FALSE	canonical	3	631	junction_3	50.0640589644907	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGCCGGCGTGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	76837017	76878204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
15923	chr5	-	2306	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	638	18	31	-1	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	2	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCTTGTTAATAACTC	2354	False	NA	-55	True	NA	NA	NA	138170046	138162862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
15925	chr13	-	6378	23	NNC	ENSMUSG00000021466.13	novel	7002	24	NA	NA	719	-421	intron_retention	FALSE	canonical	3	40	junction_22	16.0224532536208	150	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCGTCTGCCAATTTGGG	NA	False	NA	NA	False	NA	NA	NA	63710910	63656570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_63658927_63659345_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689978_63690127_63690897_63691020_63691303_63691503_63692849_63692942_63693050_63693121_63695809_63696000_63710842
15926	chr3	+	2605	19	NIC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-7	238	combination_of_known_splicesites	FALSE	canonical	1	10	junction_17	387.853064961462	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTTTAGTATACTTCCA	NA	False	NA	NA	False	NA	NA	NA	151916102	151938664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151937513_151937660_151938031
15927	chr3	+	2238	8	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	459.239655544346	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTGTGTGCCTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	122068055	122078916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122068128_122068846_122068998_122069165_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
15928	chr5	-	2394	7	NIC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	685	junction_2	55.9833804703582	1271	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACCGTAGCTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	32942990	32893649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896718_32922116_32922293_32931739_32931811_32942892
15930	chr5	-	2285	17	NNC	ENSMUSG00000029472.14	novel	2404	17	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	592.93390954958	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTGTCTGAAGTGGGT	NA	False	NA	NA	False	NA	NA	NA	122959406	122925795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940937_122944442_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
15931	chr5	+	2961	12	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-2	556	intron_retention	FALSE	canonical	0	0	junction_1	297.205608213773	2	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTGTGGTAAGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	31652108	31668759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652233_31652871_31652956_31654654_31654695_31655683_31656649_31658197_31658277_31658455_31658551_31660734_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
15932	chr8	+	5367	33	FSM	ENSMUSG00000031644.20	ENSMUST00000034065.14	5401	33	28	6	-16	1	multi-exon	FALSE	canonical	3	31	junction_16	13.1719028024618	98	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGTATATCAGTTGTC	NA	False	NA	NA	False	NA	NA	NA	61446256	61584374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
15933	chrX	+	2447	3	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	22	1	intron_retention	FALSE	canonical	3	673	junction_1	8.5	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	2896	False	NA	NA	False	NA	NA	NA	73345551	73348296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73346876_73346963_73347193_73347402
15934	chr17	+	2420	4	NNC	ENSMUSG00000116802.2	novel	2194	4	NA	NA	-4	272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	50.5327176743499	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATATCCCCAAGTATGC	6220	False	NA	NA	False	NA	NA	NA	17455129	17486597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17455238_17482739_17482867_17483108_17483170_17484473
15935	chr10	-	3190	5	NIC	ENSMUSG00000047146.18	novel	13986	11	NA	NA	140	-8763	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	54.0323976887941	1	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCTTGAGGCCCTATT	NA	False	NA	NA	False	NA	NA	NA	62728625	62657889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62728473
15936	chr1	-	2603	20	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGTTCAAGGTAAAGTTC	4869	False	NA	NA	False	NA	NA	NA	87645793	87603996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87604088_87609206_87609290_87609406_87609479_87611462_87611588_87619346_87619449_87623049_87623157_87625069_87625266_87625831_87625952_87626748_87626845_87627359_87627500_87628880_87628990_87629135_87629225_87630838_87630921_87633654_87633748_87637317_87637421_87638784_87638874_87639751_87639902_87640913_87641010_87642757_87643034_87645409
15939	chr8	+	4641	3	ISM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	1513	17	1464	-17	intron_retention	FALSE	canonical	3	414	junction_1	0.5	19	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCATCCAGCACCAAG	NA	False	NA	NA	False	NA	NA	NA	48564709	48594681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_48564826_48565002_48565139_48590292
15940	chr5	+	1777	9	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1371.01417183594	98	19	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	325	False	NA	NA	False	NA	NA	NA	77099192	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112386_77114550
15941	chr11	-	2984	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	0	-116	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	293.968630223627	2	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATAAAAGTTGTTAGTT	NA	False	NA	NA	False	NA	NA	NA	11758959	11750403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11753064_11756095_11756216_11758021_11758161_11758894
15942	chr3	+	2587	9	NNC	ENSMUSG00000027601.14	novel	1574	9	NA	NA	-13	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	381.285797499723	27	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATTATCTATTTGTAT	NA	False	NA	NA	False	NA	NA	NA	19242415	19274972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201_19273901_19274115
15943	chr2	+	3184	11	NIC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	23	-304	intron_retention	FALSE	canonical	3	416	junction_6	49.0595556441352	473	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTTTGTTGGATCCCA	NA	False	NA	NA	False	NA	NA	NA	25162512	25175623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25162690_25162926_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25175185_25175262
15946	chr2	+	4626	17	Antisense	novelGene_ENSMUSG00000101645.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	152	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGGCAGCCCTACCCTA	NA	False	NA	NA	False	NA	NA	NA	84431563	84481079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_84433250_84433993_84434097_84435527_84435589_84438672_84438758_84439300_84439421_84439874_84440066_84440850_84441003_84441106_84441231_84442362_84442444_84443269_84443434_84444231_84444349_84445430_84445615_84446823_84447287_84450261_84450797_84451173_84451331_84452353_84452427_84480749
15948	chr7	+	2978	5	Intergenic	novelGene_2948	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	78	junction_1	56.6629287982893	249	30	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGGGTAGTGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	42903198	42915293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903292_42906867_42906982_42910109_42910237_42910431_42910493_42912710
15949	chrX	-	2945	7	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3358	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	380.115954530836	4	82	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227934	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23101626_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
15950	chr12	-	2188	13	ISM	ENSMUSG00000042350.14	ENSMUST00000043169.14	5446	20	39	9178	-5	6991	5prime_fragment	FALSE	canonical	0	0	junction_12	26.4701089281224	2	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGTTCACTGACAGCAACCA	NA	False	NA	NA	False	NA	NA	NA	85017635	84974101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_84974185_84974642_84974719_84976891_84977014_84977122_84977265_84978472_84978551_84980925_84981174_84981343_84981525_84981727_84981898_84986933_84987172_84988504_84988732_84990105_84990167_84997826_84998156_85017402
15951	chr11	-	5159	10	Intergenic	novelGene_2489	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	621	99	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCGCGCGCGGCCGAGAA	NA	False	NA	NA	False	NA	NA	NA	104222904	104122303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_104122431_104173190_104173304_104185681_104185748_104193183_104193235_104197449_104197591_104201099_104201358_104208979_104209076_104212176_104212255_104213249_104213363_104218788
15952	chr2	-	4017	1	NIC	ENSMUSG00000026958.14	novel	2167	10	NA	NA	-14	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCTTGTCTAGTAGGAT	9049	False	NA	NA	False	NA	NA	NA	25246323	25242306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242300_25246300
15955	chr6	+	2554	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	39	4	39	-4	multi-exon	FALSE	canonical	0	0	junction_7	206.283558885983	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGTTGCTGTTGTGTTTT	5476	False	NA	NA	False	NA	NA	NA	125108910	125121712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
15957	chr8	+	3590	8	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	105	3201	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	565.606302825489	6	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGCTGAAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	20016570	20058699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20045732_20045999_20052877_20053142_20055523_20055604_20056462
15958	chr6	+	3085	22	FSM	ENSMUSG00000029686.16	ENSMUST00000031697.9	3161	22	72	4	4	-4	multi-exon	FALSE	canonical	3	398	junction_1	65.0983905600956	447	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTGTATATTCCCATTG	NA	False	NA	NA	False	NA	NA	NA	47431325	47503069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
15959	chr5	+	2924	5	ISM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	147	2084	38	-2084	intron_retention	FALSE	canonical	3	187	junction_1	16.5586080332859	9	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTAGTTATATGAGACA	661	False	NA	NA	False	NA	NA	NA	122988257	123007270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182
15960	chr9	+	3386	22	NNC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_17	59.7878334948976	2	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACTGACCTGGTATGCT	6633	False	NA	NA	False	NA	NA	NA	21232046	21266319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259404_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
15961	chr10	+	1427	1	Antisense	novelGene_ENSMUSG00000059554.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACCCTACAGAGACTTGA	3707	False	NA	NA	False	NA	NA	NA	18089425	18090852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_18089400_18090900
15962	chr10	+	4192	7	NNC	ENSMUSG00000025373.15	novel	3144	7	NA	NA	10	-32	intron_retention	FALSE	canonical	1	1	junction_4	49.1711862329511	3	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCCTGACACTTAAGTTG	292	False	NA	NA	False	NA	NA	NA	128247591	128277278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271408_128272336_128272473_128273176_128273281_128273951
15963	chr6	+	4049	3	ISM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	166	6577	21	109	5prime_fragment	FALSE	canonical	3	27	junction_2	92	6	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACAGTTCCAAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	149211091	149230584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_149211403_149211819_149211876_149226902
15964	chr9	+	1746	6	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	20536	-9	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	502.991053598372	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAATGAGTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	59467358	59472383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59468361_59469225_59469310_59470149_59470334_59470506_59470598_59471165_59471271_59472103
15965	chr15	-	2543	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	29	343	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1023.20583112075	1	58	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGACCTCTGTCCTCA	21	False	11399679	NA	False	NA	NA	NA	11399658	11383747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387655_11387786_11387851_11388156_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
15966	chr12	+	3448	13	FSM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	-9	0	-9	0	multi-exon	FALSE	canonical	3	56	junction_1	31.9699294476683	232	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTGGTGCCTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	81073592	81233184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
15967	chr17	+	3111	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-5	-7	intron_retention	FALSE	non_canonical	0	0	junction_14	262.866143455181	17	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGTATGAGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	6320739	6358582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6356313_6358329
15968	chr8	+	3240	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	534.43689328059	1	113	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8840	False	NA	NA	False	NA	NA	NA	120637565	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658593_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682951_120683003_120683321
15969	chr12	+	4345	27	FSM	ENSMUSG00000066643.13	ENSMUST00000111113.3	4312	27	-32	-1	4	0	multi-exon	FALSE	canonical	3	49	junction_5	11.1856972283898	88	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGTAATGCTGTAGTT	NA	False	NA	NA	False	NA	NA	NA	9024014	9078847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037404_9039904_9040091_9046068_9046130_9053996_9054142_9055762_9055833_9056719_9056774_9058001_9058112_9058478_9058690_9062660_9062742_9065969_9066107_9066436_9066641_9068085_9068233_9069877_9070011_9071729_9071841_9072718_9072884_9074193_9074335_9074885_9075043_9077482_9077724_9078005
15970	chr14	-	4090	3	NIC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	0	3799	intron_retention	FALSE	canonical	3	2789	junction_1	154	7	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAATGCTTAAGGTAAGCT	1688	False	NA	NA	False	NA	NA	NA	19873892	19866265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_19870075_19872633_19872759_19873736
15971	chr10	-	3150	8	NIC	ENSMUSG00000019814.6	novel	2297	11	NA	NA	52	-468	intron_retention	FALSE	canonical	3	645	junction_4	47.6376630280654	33	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAACATGAACGGAATTGG	NA	False	NA	NA	False	NA	NA	NA	13068860	13054351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_13054741_13054866_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
15972	chr7	+	3361	11	Antisense	novelGene_ENSMUSG00000078762.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATGGCGCCCATCTATG	NA	False	NA	NA	False	NA	NA	NA	30353167	30364400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30353728_30356373_30357172_30357264_30357353_30357927_30359025_30359520_30359601_30359682_30359753_30361052_30361216_30361294_30361400_30362360_30362552_30362646_30362710_30364254
15973	chr7	+	2935	14	NNC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	307.567474677167	1	92	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAAATACTACACTGTT	NA	False	NA	NA	False	NA	NA	NA	79944201	79965994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950781_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
15974	chr3	-	4015	9	NIC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-4	0	intron_retention	FALSE	canonical	3	875	junction_8	42.0468488712293	5	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	174	False	NA	NA	False	NA	NA	NA	153650087	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153644292_153644533_153644805_153647519_153647608_153650032
15975	chr1	+	3094	7	NNC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	0	-13	intron_retention	FALSE	canonical	2	10	junction_6	150.738920727934	3	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGATCTCAAGGAATCA	8185	False	NA	NA	False	NA	NA	NA	134333732	134339461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134336970
15976	chr11	+	2287	13	NNC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	183.057064569737	1977	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	4141	False	NA	NA	False	NA	NA	NA	102321150	102327631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325567_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
15977	chr18	+	4477	5	FSM	ENSMUSG00000034300.18	ENSMUST00000097622.4	4256	5	-199	-22	-199	0	multi-exon	FALSE	canonical	3	31	junction_2	5.02493781056044	158	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGTACGATAGTGTCT	4888	False	NA	NA	False	NA	NA	NA	34892409	34906813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_34892651_34895547_34895778_34896125_34896184_34901220_34902006_34903650
15978	chrX	-	2637	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-6	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	547.791342914344	4	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTACAGTTCTTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	158921358	158905210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906154_158906303_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915068_158915239_158916168_158916229_158921251
15981	chr14	-	3908	12	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-18	-73	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	65.9081504635099	9	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCTTGTTTTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	58127697	58070232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58073012_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
15982	chr7	-	1699	2	NIC	ENSMUSG00000030695.17	novel	895	4	NA	NA	-11	56	intron_retention	FALSE	canonical	3	19619	junction_1	0	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGCCCATCTGCTTGGT	NA	False	NA	NA	False	NA	NA	NA	126398353	126395386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126396949_126398216
15984	chr16	+	2988	19	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	31	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	252.926604539638	12	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGAATTTTAGC	NA	False	NA	NA	False	NA	NA	NA	13598607	13632705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953_13631818_13632382
15985	chr3	-	2171	16	Antisense	novelGene_ENSMUSG00000027823.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	959	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACACAGAAGCGCGCGCA	5220	False	NA	NA	False	NA	NA	NA	63924174	63883589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_63883730_63887554_63887737_63889829_63889945_63893018_63893117_63895077_63895182_63897573_63897768_63897935_63898102_63900609_63900762_63901218_63901393_63904225_63904297_63906033_63906137_63908931_63909058_63918975_63919092_63921672_63921803_63922839_63923017_63924051
15986	chr2	+	2505	8	NNC	ENSMUSG00000027479.15	novel	7336	7	NA	NA	10	-4748	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	402.922081898762	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTTCTGAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	153583203	153610482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793_153608892_153608964
15987	chr11	+	2138	10	NIC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	-7	0	intron_retention	FALSE	canonical	3	1895	junction_3	141.763060887168	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471220	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
15991	chr1	-	4399	28	NNC	ENSMUSG00000034088.16	novel	4427	28	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	205.743697681855	1	177	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	93373403	93335483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336853_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352998_93353129_93355279_93355359_93355869_93355975_93357103_93357208_93357819_93358024_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
15992	chr1	+	2597	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	-8	246	-8	-246	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	338	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177551	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
15993	chr15	-	4101	22	NNC	ENSMUSG00000047921.18	novel	4048	22	NA	NA	-58	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.9692446667405	141	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCACACTGTGTTGATTTC	NA	False	NA	NA	False	NA	NA	NA	72933111	72461473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_72462012_72462464_72462689_72557131_72557222_72565351_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72922443_72922573_72924010_72924157_72929770_72930364_72932809
15995	chr4	+	939	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	207	-4	7	4	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	8086	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTACTCTCCATTATTACC	NA	False	NA	NA	False	NA	NA	NA	140688720	140706508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
15996	chr10	+	2460	11	ISM	ENSMUSG00000019970.16	ENSMUST00000092673.11	2576	12	912	-12	91	0	3prime_fragment	FALSE	canonical	3	813	junction_6	62.1450722101117	3	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21870700	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
15997	chr5	-	3491	20	NNC	ENSMUSG00000029253.13	novel	3192	19	NA	NA	16	4	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_17	42.8300125180833	21	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTTGTCTGTGGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	86213365	86159878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86208383_86208756_86209862_86209907_86213186
15998	chr19	+	704	1	Intergenic	novelGene_1204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGACACACCAGAAGGTG	529	False	NA	NA	False	NA	NA	NA	8952606	8953310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_8952600_8953300
15999	chr18	+	2913	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26651	107	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	375.794259460928	1	79	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAGAATACTACACAGAT	6434	False	NA	-88	True	NA	NA	NA	77126252	77241139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223645_77232698_77232839_77237756_77237795_77240310
16000	chr13	+	2843	9	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1543.35047461683	13	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGAGTGGTGGTTGC	NA	False	NA	NA	False	NA	NA	NA	14787843	14802221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791371_14791419_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
16001	chr2	-	2687	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	18	6	0	-6	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	33	58	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGCCACAAGAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	156022069	155989174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
16002	chr15	-	4514	5	ISM	ENSMUSG00000041852.16	ENSMUST00000109510.10	7323	6	57687	-177	45391	-13	3prime_fragment	FALSE	canonical	3	9	junction_2	50.4653346367583	122	80	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTTTTTCATTTACT	NA	False	NA	NA	False	NA	NA	NA	82738621	82692649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_82693989_82698681_82698805_82699811_82699862_82709431_82709526_82735713
16003	chr5	-	2218	14	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-16	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	587.885499860939	2	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTAATAACTCTGTAGA	3741	False	NA	NA	False	NA	NA	NA	138168659	138162856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167857_138167987_138168578
16004	chr10	+	1097	4	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	-20	intron_retention	FALSE	canonical	3	6566	junction_3	484.21023900322	2	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATAAAGTGATCTCGTTC	NA	False	NA	NA	False	NA	NA	NA	80662519	80665098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80662740_80664070_80664468_80664544_80664631_80664704
16005	chr1	-	3040	7	NIC	ENSMUSG00000006299.14	novel	1756	11	NA	NA	89	0	intron_retention	FALSE	canonical	3	1233	junction_6	29.9258342499513	2	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	74323750	74319004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74319469_74319941_74320097_74320247_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252
16006	chr19	-	2162	19	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	361.085678591592	11	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5123	False	NA	NA	False	NA	NA	NA	53027008	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980058_52985340_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
16007	chr11	+	3716	9	NIC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	-5	-146	intron_retention	FALSE	canonical	3	2673	junction_3	114.06241438353	1	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCTCCTGAAGTTGCCA	NA	False	NA	NA	False	NA	NA	NA	107370348	107388853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107386592_107388349
16008	chr4	+	3003	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	83	1263	83	0	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	3	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	-3	True	NA	NA	False	NA	NA	NA	40970988	41012608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
16010	chr2	-	3482	28	FSM	ENSMUSG00000027546.16	ENSMUST00000029060.11	3529	28	47	0	47	0	multi-exon	FALSE	canonical	3	157	junction_27	35.3190436202576	15	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	6670	False	NA	NA	False	NA	NA	NA	168583673	168476357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168583601
16011	chr1	+	3210	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	0	138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	437.094661435662	1	106	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCAGACTTTAGTTGAT	NA	False	NA	NA	False	NA	NA	NA	85992362	86067011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003514_86003727_86005077_86005222_86006289_86006517_86009758_86009796_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
16012	chr11	+	2543	10	NNC	ENSMUSG00000057522.16	novel	3063	10	NA	NA	19	-392	intron_retention	FALSE	non_canonical	0	0	junction_9	85.204474466637	7	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTATCTCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	95304942	95383840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381225_95382602
16013	chr11	-	1937	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	74	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1006.30953291373	4	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5275	False	NA	NA	False	NA	NA	NA	88846217	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821167_88824273_88824388_88826635_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
16014	chr8	-	3648	2	Antisense	novelGene_ENSMUSG00000052446.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	99	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGCATTGCTAAGCCGCC	694	False	NA	NA	False	NA	NA	NA	72723227	72704946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_72705004_72719636
16015	chr3	+	2036	15	NIC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	897.498541866816	2	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3799	False	NA	NA	False	NA	NA	NA	88204417	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228616_88228671_88228750
16016	chr13	+	2983	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	43	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	73.4347783183599	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTGCGAACTCAAGAC	NA	False	NA	NA	False	NA	NA	NA	97619251	97633512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97629663_97630239_97630912_97632044_97632269
16017	chr18	+	4635	7	NIC	ENSMUSG00000041915.10	novel	3385	8	NA	NA	20	1327	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	37.8832270126093	156	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAAACTGTCTTCTGCC	6887	False	NA	NA	False	NA	NA	NA	31892898	31917123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_31893248_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
16018	chr1	+	3413	4	FSM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	44	1	44	-1	multi-exon	FALSE	canonical	3	151	junction_3	24.6080384337223	182	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGAGCAGGCCTGTCATT	NA	False	NA	NA	False	NA	NA	NA	43137913	43155106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43138023_43139874_43140042_43150157_43150534_43152345
16019	chr2	+	3010	14	NNC	ENSMUSG00000027247.17	novel	1479	7	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	124.173909350208	708	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTGGCTGTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	91481841	91502670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_91482000_91482093_91482169_91484387_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
16020	chr11	+	1037	7	Antisense	novelGene_ENSMUSG00002076145.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	140	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCCATCAGGACACCGT	NA	False	NA	NA	False	NA	NA	NA	21507241	21515851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_21507571_21508463_21508551_21509190_21509310_21509700_21509876_21512864_21512984_21514036_21514217_21515823
16021	chr12	+	2978	20	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	87.0258343532272	5	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCTACTGGCTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	17398460	17480089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17408102_17408240_17409090_17409157_17411134_17411200_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
16022	chrX	-	3444	4	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2594	0	intron_retention	FALSE	canonical	3	77	junction_3	4.18993502999218	171	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTTCTGGCGATGTTC	NA	False	NA	NA	False	NA	NA	NA	72083303	72077586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72080775_72080892_72080952_72081548_72081672_72083229
16023	chr4	+	2340	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	25	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	335.403597675	2	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGCCATTAGGAACTGT	NA	False	NA	NA	False	NA	NA	NA	124923809	124949161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929107_124934729_124934915_124936406_124936474_124936581_124936704_124937357_124937517_124937995_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
16027	chr6	-	2582	12	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	516.513326574374	26	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCTTCTGTGTTTGTGT	2922	False	NA	NA	False	NA	NA	NA	136805141	136790655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_136791640_136793111_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
16028	chr3	+	2960	10	NIC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	7	-4	intron_retention	FALSE	canonical	3	18	junction_3	814.194277176924	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTGAATCTCATTTTA	NA	False	NA	NA	False	NA	NA	NA	79498678	79510579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_79498865_79500916_79501058_79502508_79502616_79503398_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
16029	chr13	-	2555	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	-53	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	52	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	54713169	54699035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
16030	chr9	+	2660	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	192.749189362757	9	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	77824698	77891801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77891046_77891114
16031	chr19	-	2003	17	NIC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	7	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	369.093055466707	56	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTTGGTTTAATGTCAA	NA	False	NA	NA	False	NA	NA	NA	27407213	27367454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
16032	chr9	+	1831	13	ISM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	407	22	213	-2	3prime_fragment	FALSE	canonical	3	1280	junction_12	411.311815685159	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1402	False	NA	NA	False	NA	NA	NA	108437891	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
16033	chr11	-	1891	10	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1316.30567015566	1	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106672992_106675235_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
16034	chr11	-	2586	8	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	7	1504	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	451.385079279232	51	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGTTAAACTGTGT	NA	False	NA	NA	False	NA	NA	NA	120534567	120528737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120528829_120529471_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534505
16035	chr1	+	2767	7	NIC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	-1	243	intron_retention	FALSE	canonical	3	409	junction_5	20.7739152678438	6	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTGAATCAACCTGCT	NA	False	NA	NA	False	NA	NA	NA	171954338	171963093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171958341_171960696_171960874_171961566_171961612_171961773
16036	chr9	-	3350	22	NNC	ENSMUSG00000032407.15	novel	3231	27	NA	NA	9279	-6	intron_retention	FALSE	canonical	0	0	junction_13	270.797813474025	1	56	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTATAATGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	95384630	95343036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95371752_95371965_95372142_95372309_95373143_95373530_95375790_95375871_95377887_95377987_95382740_95382873_95384592
16038	chr15	-	2419	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	23	328	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	759.61901797489	5	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTACTACCAAAGATATCA	NA	False	NA	NA	False	NA	NA	NA	11399728	11383762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388429_11389730_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
16040	chr12	+	2633	5	Intergenic	novelGene_4304	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	43.3265219005634	4	63	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTATTTTTATTGAAT	NA	False	NA	NA	False	NA	NA	NA	19116406	19127593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_19116514_19123371_19123499_19123700_19123762_19125090_19125753_19125917
16041	chr2	-	4220	26	Antisense	novelGene_ENSMUSG00000119104.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	50	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGGAGAGGCAGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	32120693	32081519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_32081664_32083772_32084017_32084391_32084513_32084865_32085005_32089008_32089103_32090836_32091034_32094021_32094335_32096345_32096590_32098648_32098842_32102080_32102300_32102894_32103090_32106055_32106246_32106623_32106762_32107201_32107346_32108686_32108771_32109228_32109415_32109548_32109750_32110101_32110191_32111093_32111191_32111350_32111548_32112299_32112397_32113427_32113556_32113937_32114180_32116240_32116397_32116951_32117047_32120620
16042	chr14	-	2464	7	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-20	intron_retention	FALSE	canonical	3	3066	junction_3	182.952331375021	7	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACGATCGCTTGCAA	NA	False	NA	NA	False	NA	NA	NA	63746217	63729815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63730296_63731190_63731897_63733168_63733342_63733438_63733589_63734393_63735090_63737569_63737770_63746158
16043	chr7	+	3832	5	FSM	ENSMUSG00000078779.5	ENSMUST00000205701.2	3437	5	-59	-336	-59	336	multi-exon	FALSE	canonical	3	101	junction_4	40.2639727299729	304	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTGTTTATTTTGCAT	349	False	NA	NA	False	NA	NA	NA	27537972	27556199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27538135_27542259_27542313_27543709_27543837_27545828_27545928_27552808
16044	chr2	-	3085	11	NIC	ENSMUSG00000037376.15	novel	2948	11	NA	NA	-19	-13	combination_of_known_junctions	FALSE	canonical	3	4	junction_10	143.75746937116	439	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCATAAGTCATTA	NA	False	NA	NA	False	NA	NA	NA	132657952	132646139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657550
16045	chr7	+	2091	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	3	-59	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	493	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTTGTGGTCCCTGATC	290	False	NA	NA	False	NA	NA	NA	44465726	44480169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44479556_44479904
16046	chr1	-	2829	21	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACAACTAGTGGGAACTA	5040	False	NA	NA	False	NA	NA	NA	87645622	87603978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87604088_87609206_87609290_87609406_87609485_87611466_87611588_87619346_87619449_87623049_87623156_87625116_87625266_87625831_87625952_87626748_87627500_87628880_87628991_87629134_87629225_87630838_87630921_87633654_87633745_87635816_87635931_87637337_87637425_87638787_87638870_87639748_87639902_87640913_87641010_87642757_87642814_87642996_87643034_87645409
16047	chr7	+	2294	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	493	1	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACTTGCTGTGAGTAT	285	False	NA	NA	False	NA	NA	NA	44465721	44480230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44477991_44478202
16048	chr11	-	2476	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	380	5	-32	2	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	1	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
16049	chr4	-	3960	19	NIC	ENSMUSG00000028678.14	novel	2842	20	NA	NA	-4	-17	intron_retention	FALSE	canonical	3	415	junction_14	30.0115718422818	2	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAGAAGAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	117039807	117016852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
16050	chr14	-	2231	16	Antisense	novelGene_ENSMUSG00000021913.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCCTGAGGACCAGAATG	NA	False	NA	NA	False	NA	NA	NA	32069690	32057296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_32057381_32059396_32059577_32059709_32059838_32061160_32061341_32061859_32062012_32062601_32062706_32063164_32063286_32063994_32064145_32065156_32065284_32066276_32066459_32066669_32066743_32066839_32066964_32067064_32067139_32068353_32068516_32068652_32068814_32069461
16051	chr5	-	3106	10	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	19744	1	-887	-1	3prime_fragment	FALSE	canonical	3	636	junction_8	199.869834185362	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110938219	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077
16052	chr4	-	3325	10	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	1	-8	combination_of_known_splicesites	FALSE	canonical	2	11	junction_8	280.315739087635	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATGTAAACGGACTGT	6812	False	NA	NA	False	NA	NA	NA	126096415	126057886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126080227_126080382_126096362
16053	chr18	+	997	3	NNC	ENSMUSG00000024576.15	novel	3204	9	NA	NA	-105	-298	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	887.5	26	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGCTGTTGGGAGATAAA	323	False	NA	NA	False	NA	NA	NA	61688239	61691011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61690826
16054	chr15	-	1631	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	390	-163	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	514.932238140654	25	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTCCCCAGCCTGGGGG	NA	False	NA	NA	False	NA	NA	NA	83056403	83037857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038353_83038590_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
16055	chr19	-	2356	11	ISM	ENSMUSG00000024826.16	ENSMUST00000118623.2	2406	12	5629	0	-91	0	3prime_fragment	FALSE	canonical	3	8	junction_5	295.881750028622	32	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGCTGGACAGTTTGT	6980	False	NA	NA	False	NA	NA	NA	5957191	5947414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5953758_5953801_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028
16056	chr3	+	3097	24	Fusion	ENSMUSG00000097532.3_ENSMUSG00000015522.19	novel	2825	18	NA	NA	-84	0	multi-exon	FALSE	canonical	0	0	junction_13	97.3002680109847	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGGATCCTCTGAAATT	NA	False	NA	NA	False	NA	NA	NA	95334897	95402882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_95335045_95335864_95336134_95337597_95337750_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
16058	chr9	+	2532	12	NNC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	15	0	intron_retention	FALSE	canonical	0	0	junction_11	174.840375842634	27	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9087	False	NA	NA	False	NA	NA	NA	15217524	15228266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15227322_15227484
16059	chr19	-	2732	7	ISM	ENSMUSG00000025159.9	ENSMUST00000167927.8	7875	29	32294	3122	-588	1	3prime_fragment	FALSE	canonical	3	263	junction_4	6.36832439151427	3	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGCACACTCACGTGTAC	NA	False	NA	NA	False	NA	NA	NA	41937259	41932646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41935543_41936128_41936186_41936654
16060	chr10	-	2572	16	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	55	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1435.38370557221	2	103	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAGTGCTTATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86541318	86526705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530041_86530235_86530439_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539464_86540157_86540261_86541170
16061	chr11	+	2475	10	NIC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	-15	0	intron_retention	FALSE	canonical	3	1895	junction_3	129.307080191513	53	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471212	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
16062	chr2	-	3035	14	NNC	ENSMUSG00000027206.14	novel	2073	13	NA	NA	-5	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.262657452208	1014	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAAGTATGTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	125700921	125672379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_125672897_125672938_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
16064	chr1	+	3192	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	23	-1754	-14	1754	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	919	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATCAACAGAAAAATTCAA	NA	False	NA	NA	False	NA	NA	NA	162398181	162424688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
16065	chr2	+	2719	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	37	560	0	-553	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCCTTTTCTCCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	129040720	129052976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
16066	chr17	+	3204	7	ISM	ENSMUSG00000061607.16	ENSMUST00000082337.13	7335	16	12010	0	5024	0	3prime_fragment	FALSE	canonical	3	142	junction_2	14.742229591664	3	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	NA	False	NA	NA	False	NA	NA	NA	36164416	36170562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
16067	chr3	+	4394	22	FSM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	-7	61	-7	-61	multi-exon	FALSE	canonical	3	253	junction_5	44.0686436309756	1	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTCCAATTCTGGCAGA	NA	False	NA	NA	False	NA	NA	NA	88243559	88269584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
16068	chr13	-	2328	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	66	95	-18	2	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	5	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTCACAATTCTCATTT	NA	False	NA	NA	False	NA	NA	NA	100923012	100915252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
16071	chr6	-	2234	11	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-29	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	584.627069164609	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	8927	False	NA	NA	False	NA	NA	NA	47790327	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773352_47773476_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
16072	chrX	-	3538	10	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	225	-27	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	94.2539254839596	5	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAATAAACCAGCATTTT	NA	False	NA	NA	False	NA	NA	NA	156381414	156330846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333180_156337955_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381306
16074	chr6	+	2284	9	NNC	ENSMUSG00000015733.14	novel	2537	10	NA	NA	11405	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	783.182918847826	3	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTAATTTGGTAAGTTGT	-14	True	NA	NA	False	NA	NA	NA	17648516	17666964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_17648583_17650001_17650054_17654104_17654169_17656236_17656411_17657171_17657252_17660747_17660827_17662096_17662163_17665080_17665113_17665293
16075	chr2	+	2501	3	FSM	ENSMUSG00000035772.12	ENSMUST00000146332.2	2504	3	-3	6	-3	-6	multi-exon	FALSE	canonical	3	604	junction_2	8	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACCACCTGGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	28358098	28361171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28358155_28358254_28358963_28359434
16076	chr11	-	3284	13	NNC	ENSMUSG00000078622.9	novel	5193	13	NA	NA	24	1417	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	186.764706396994	11	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAAATCTGTGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	106107146	106090187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102676_106103906_106104188_106106974
16077	chr18	+	2881	19	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-14	0	intron_retention	FALSE	non_canonical	0	0	junction_3	430.911626957214	1	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6235	False	NA	NA	False	NA	NA	NA	34758045	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759965_34760068_34760605_34760749_34760844_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762317_34762480_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765371
16078	chr5	+	3769	11	FSM	ENSMUSG00000039191.13	ENSMUST00000113865.5	5440	11	220	1451	220	-226	multi-exon	FALSE	canonical	3	158	junction_1	104.823470654239	30	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTATTTTAGTAAGAATT	NA	False	NA	NA	False	NA	NA	NA	53748032	53813253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_53748067_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
16079	SIRV7	-	2394	5	NNC	SIRV7A	novel	2498	5	NA	NA	67	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1869.39540694311	4	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147851	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2640_2993_3112_3809_3897_114680_114989_147608
16083	chr5	-	2326	5	NNC	ENSMUSG00000072762.10	novel	2001	4	NA	NA	-93155	475	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	55.6433958345463	111	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	109992907	109883380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109884194_109884448_109885666_109886815_109886877_109887064_109887192_109992799
16084	chrX	-	2876	22	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	180	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATTACAAAAAGACTCAC	NA	False	NA	NA	False	NA	NA	NA	143152666	143118918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125476_143125643_143125809_143127257_143127332_143128604_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256_143134372_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147102_143150892_143150933_143152553
16085	chr10	-	2477	14	NNC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	-14944	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_13	222.180400075062	11	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116400012	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116399935
16086	chr4	+	3158	26	NNC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	11586	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_25	348.893070151873	10	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	137333124	137385842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137385506
16087	SIRV7	-	2006	4	NNC	SIRV7A	novel	2247	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1714.96964663777	3	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	114916	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_4098_4143_114746
16088	chr5	-	3284	14	NNC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	74.1362092016641	2	65	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATTTTGAGCCATGCAA	NA	False	NA	NA	False	NA	NA	NA	9211715	9168870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179364_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
16090	chr7	-	3781	22	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	-1	intron_retention	FALSE	canonical	3	82	junction_9	31.2465145448547	5	33	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGAGCCTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	140697703	140681138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
16091	chr19	+	3025	18	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	-4	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.014276793962	17	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTCCAGGCTCAGCTAT	3465	False	NA	NA	False	NA	NA	NA	8919234	8929659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919641_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
16093	chr13	-	4280	28	FSM	ENSMUSG00000021357.15	ENSMUST00000021785.8	4256	28	-25	1	-11	-1	multi-exon	FALSE	canonical	3	102	junction_19	19.2909994862811	154	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGTGTTTGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	31158062	30997902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
16094	chr12	-	2001	7	NNC	ENSMUSG00000076432.14	novel	1970	7	NA	NA	53	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1272.61319077453	9	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAGTGATGTGATGA	NA	False	NA	NA	False	NA	NA	NA	21467536	21440096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21466948_21467016_21467133_21467504
16096	chr14	+	3807	6	NNC	ENSMUSG00000021890.7	novel	4918	6	NA	NA	-39	-174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.6477471745	1	48	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATGTCTTGTTTTATTT	6360	False	NA	NA	False	NA	NA	NA	31217113	31231641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31217189_31219704_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
16097	chr8	+	2133	17	NIC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	2	-1100	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	269.584569001547	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1908	False	NA	NA	False	NA	NA	NA	106937656	106978326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106937715_106939007_106939204_106943875_106943913_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
16099	chr3	+	1899	12	Antisense	novelGene_ENSMUSG00000103907.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGACCATGGCAGTGTCA	NA	False	NA	NA	False	NA	NA	NA	50326352	50397700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_50326816_50332012_50332189_50333481_50333634_50335420_50335516_50336321_50336428_50338492_50338617_50372436_50372484_50378493_50378590_50382098_50382226_50389797_50389916_50393238_50393374_50397440
16100	chr1	-	3918	24	NNC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	173.083903951764	2	102	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAGTCTGCATACTCTAA	NA	False	NA	NA	False	NA	NA	NA	135358226	135312211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316299_135317088_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334313_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
16101	chr7	-	3349	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	285.567948576933	1	77	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTACTGGCTGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	44198233	44182177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188358_44188505_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
16102	chr7	+	3503	7	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-1	-248	intron_retention	TRUE	non_canonical	0	0	junction_4	331.995481896968	1	117	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103867998	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103880980_103881097_103881573_103882794_103882837
16103	chr3	+	3100	8	NIC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	-6	73	intron_retention	FALSE	canonical	3	1845	junction_1	144.401650733965	11	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTGAGTTGAACAT	4936	False	NA	NA	False	NA	NA	NA	138148865	138161077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_138148955_138151050_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
16104	chr9	+	1731	13	ISM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	183	31	-1	-11	intron_retention	FALSE	canonical	3	1479	junction_8	301.73907970666	154	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGTTTGGGAAAAAAAAA	1178	False	NA	NA	False	NA	NA	NA	108437667	108442752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525
16105	chr7	+	1830	4	NNC	ENSMUSG00000038503.16	novel	489	4	NA	NA	-71	1096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	621.56951877217	5	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	NA	False	NA	NA	NA	83541466	83548384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544737_83544971_83546957_83547469_83547515
16106	SIRV7	-	2416	5	FSM	SIRV7A	SIRV701	2462	5	40	6	35	-4	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCGTAATTAGTGTTAATA	NA	False	NA	NA	False	NA	NA	NA	147883	1009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
16110	chr18	-	5138	5	FSM	ENSMUSG00000024378.10	ENSMUST00000118990.2	648	5	-36	-4454	13	210	multi-exon	FALSE	canonical	0	0	junction_1	19.6643713349804	21	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTGCCAATGTTTCCTA	NA	False	NA	NA	False	NA	NA	NA	33346861	33332197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_33336869_33339172_33339300_33341229_33341280_33342095_33342211_33346686
16111	chr11	-	4616	9	NNC	ENSMUSG00000034621.15	novel	6871	8	NA	NA	42	-133	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	54.6671747943864	8	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGGGGGGGGATAACCT	702	False	NA	NA	False	NA	NA	NA	102446960	102366873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102369324_102371380_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
16113	chr2	+	1979	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-8	1	intron_retention	FALSE	canonical	0	0	junction_1	732.824426448791	8	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116403	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116648_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
16114	chr5	+	1526	5	ISM	ENSMUSG00000028954.12	ENSMUST00000200337.2	3862	14	16416	646	16416	-646	intron_retention	FALSE	canonical	3	670	junction_1	24.6424430607032	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCGAAAAATGACAGTGTT	NA	False	NA	NA	False	NA	NA	NA	24907400	24914728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680
16115	chr19	+	3149	5	NNC	ENSMUSG00000024772.10	novel	3353	5	NA	NA	-40	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	176.696066736076	793	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGCCTCTCATGCTCCC	NA	False	NA	NA	False	NA	NA	NA	6326914	6350118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6327409_6331247_6331346_6344279_6344657_6347562_6347728_6348103
16116	chr4	-	3715	8	ISM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	10971	0	10971	0	3prime_fragment	FALSE	canonical	3	104	junction_6	19.4327726550079	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAGCCTTTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	135738103	135730678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539
16117	chr6	-	720	1	ISM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	7210	562	2421	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGTTTTGACTAAAGTTC	5640	False	NA	-57	True	NA	NA	NA	87820878	87820158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87820200_87820900
16118	chr15	-	3180	6	FSM	ENSMUSG00000053411.17	ENSMUST00000132821.8	528	6	-10	-2642	-9	0	multi-exon	FALSE	canonical	3	258	junction_5	93.730251253264	588	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	NA	False	NA	NA	NA	79855329	79800007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
16119	chr9	-	4886	5	FSM	ENSMUSG00000032252.15	ENSMUST00000185675.7	4850	5	-36	0	9	0	multi-exon	FALSE	canonical	3	145	junction_3	11.5974135047432	130	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTGGATATTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	62029928	61964529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_61968318_61975666_61975913_61977296_61977896_61995710_61995802_62029766
16120	chrX	-	4619	19	NIC	ENSMUSG00000103436.2	novel	5727	17	NA	NA	-8	-551	intron_retention	FALSE	canonical	0	0	junction_1	86.4158228824122	7	73	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAATGATGTGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	7471628	7425391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7427126_7430100_7430181_7430474_7430528_7460264_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
16121	chr2	-	3630	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	-12	118	-12	-118	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	1	116	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTCCCTTGTTTAAA	NA	False	NA	NA	False	NA	NA	NA	94268493	94242144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
16122	chr8	+	701	6	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	64	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8523.81610313127	33	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGGGTTTCTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	123829152	123831982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_123829185_123829391_123829488_123829583_123829726_123829921_123830096_123830636_123830694_123831782
16123	chr16	+	7375	39	Antisense	novelGene_ENSMUSG00000039929.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	12	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGACTGGAAGGAAAGGCGG	NA	False	NA	NA	False	NA	NA	NA	90548414	90607306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_90549067_90550210_90550811_90551698_90551943_90552963_90553160_90554630_90554741_90556686_90556831_90557278_90557386_90558510_90558621_90559152_90559316_90563542_90563651_90563903_90564076_90564917_90564987_90565093_90565201_90566275_90566470_90568356_90568416_90569467_90569649_90570147_90570355_90570938_90571790_90573012_90573193_90574241_90574461_90575935_90576129_90577086_90577262_90578398_90578538_90578944_90579064_90580165_90580283_90582988_90583102_90584214_90584329_90584967_90585106_90585824_90585997_90587962_90588101_90589573_90589772_90592250_90592374_90593245_90593379_90594778_90594867_90596907_90597007_90600216_90600347_90601334_90601488_90602285_90602426_90607086
16124	chr3	-	1790	12	NNC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	-12	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	786.553366496583	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTCTCTGCTGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	108352537	108333888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334117_108334211_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
16125	chr10	+	3396	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	-4	0	intron_retention	FALSE	canonical	3	348	junction_5	43.0301254413897	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	NA	False	NA	NA	NA	93289268	93320737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_93289531_93295678_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
16126	chr19	+	1786	7	Antisense	novelGene_ENSMUSG00000024640.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAGTGGCAGGAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	15882493	15902306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_15883548_15892255_15892398_15894440_15894614_15895569_15895776_15896818_15896891_15898300_15898358_15902224
16127	chr18	-	3293	6	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	13	junction_1	81.2782873835319	55	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	70605551	70585282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_70586460_70597032_70597136_70600401_70601589_70602519_70602849_70604743_70605051_70605361
16129	chr14	+	1926	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	0	1290	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2956.18534770741	2	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGCTGCAGTTTCAAG	NA	False	NA	NA	False	NA	NA	NA	63359910	63380602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375564_63375795_63375944_63376447_63376565_63379182_63379312_63379680_63379974_63380020
16130	chr7	-	3609	16	NNC	ENSMUSG00000003868.15	novel	2312	18	NA	NA	-18539	-9917	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	323	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGAATCGGGCGGGC	NA	False	NA	NA	False	NA	NA	NA	45106059	45084291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45084593_45085953_45086136_45087523_45087716_45088900_45089089_45089328_45089472_45091844_45091965_45092338_45092461_45092951_45093058_45094054_45094120_45094203_45094280_45097319_45097434_45097674_45097801_45100983_45101082_45101173_45101345_45104248_45104326_45104531
16131	chr4	-	3176	21	NNC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	2	761	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	239.834130181674	35	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTTGGTATCCTATA	7	True	NA	NA	False	NA	NA	NA	34614901	34570034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595073_34595237_34597307_34597442_34598607_34598757_34598982_34599141_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
16132	chr2	-	2481	10	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	527.682985639421	1	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTCTAAGTACCCTCTG	NA	False	NA	NA	False	NA	NA	NA	154916376	154901229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909305_154910744_154910939_154916294
16133	chr18	+	3295	1	NIC	ENSMUSG00000033272.13	novel	2842	3	NA	NA	957	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	283	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTGTCCTGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	36813618	36816913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36813600_36816900
16134	chr4	+	2660	14	NIC	ENSMUSG00000045751.17	novel	4478	24	NA	NA	13813	-23	combination_of_known_junctions	FALSE	canonical	3	21	junction_10	54.7666377951451	1	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATTAAAGATTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	24521246	24602923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24596137_24596302_24598785_24598883_24600154_24600323_24602573
16135	chr13	-	2367	4	ISM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	29906	-793	4147	2	3prime_fragment	FALSE	canonical	3	34	junction_1	88.8831942620326	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGACTACAGCTCTTA	287	False	NA	NA	False	NA	NA	NA	13538243	13532226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028
16136	chr1	+	1013	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	391	-186	391	186	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAGGAACCGTGAACAT	NA	False	NA	NA	False	NA	NA	NA	60743481	60744494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743500_60744500
16137	chr15	-	1653	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-4	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2431.65253274394	2	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGTGCTGCGTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	31601890	31591034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593681_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597586_31597722_31598145_31598207_31601746
16139	chr13	+	3263	8	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2859	-1	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	86.1488981534948	295	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGGAGTGTTTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	35922436	36058045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
16140	chr11	-	2121	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1698.92258799511	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTGAAATTGTACTTTAT	9659	False	NA	NA	False	NA	NA	NA	106679315	106672370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676160_106676220_106676363_106677315_106677371_106677734_106677901_106679098
16141	chr8	-	1874	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	2142.33171742847	3	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43759951	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758431_43758596_43759877
16142	chr10	-	3091	7	NIC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-6	-4	intron_retention	FALSE	canonical	1	1248	junction_6	1076.15746472758	48	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTGTAGTTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	90959890	90952439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90959569_90959777
16143	chr11	-	3415	26	NIC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	1	3	junction_25	38.4503003889436	8	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	NA	False	NA	NA	NA	98620198	98595416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620129
16144	chr9	-	3866	15	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	341.643544098948	1	145	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAAGCCTGTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	108526585	108480147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108487086_108487147_108488831_108488945_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526466
16145	chr12	-	2680	7	Intergenic	novelGene_4326	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	22.4381866963938	3	41	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGTATTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	23455086	23034974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23035159_23195350_23195429_23444299_23445334_23445419_23446506_23447833_23447895_23448096_23448224_23454976
16146	chrX	-	4466	3	NNC	ENSMUSG00000031229.17	novel	3124	2	NA	NA	-1104	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.5	1	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTCTTGTTGAAGCAT	NA	False	NA	NA	False	NA	NA	NA	104920305	104909156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_104909279_104909325_104911530_104918165
16147	chr16	+	2156	10	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	-133	38	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	291.647343275241	2180	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	6937	False	NA	NA	False	NA	NA	NA	38378926	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38395167_38395352_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
16148	chr3	+	2636	16	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	215.602556158832	5	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATTGGTATAGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	157742336	157772722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758457_157758522_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
16150	chr1	+	2134	13	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	4	-808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	667.523839565965	7	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTAGGTTTTATAGAT	895	False	NA	NA	False	NA	NA	NA	58432294	58445704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437016_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193_58444544_58445243
16151	chr16	-	1934	8	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	54	706	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	899.259990554592	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAACTGGAATGAATGTTT	NA	False	NA	NA	False	NA	NA	NA	22084596	22064491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067864_22073225_22073321_22073733_22073868_22077735_22078012_22084490
16152	chr1	+	2578	1	NIC	ENSMUSG00000038806.8	novel	3213	7	NA	NA	2800	-636	mono-exon	FALSE	NA	NA	NA	NA	NA	1	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCACATAATGGCTCACA	NA	False	NA	NA	False	NA	NA	NA	180692464	180695042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180692500_180695000
16153	chr12	+	4396	13	FSM	ENSMUSG00000017843.15	ENSMUST00000109832.3	4108	13	-294	6	-293	-6	multi-exon	FALSE	canonical	3	190	junction_12	229.453638502906	137	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATCGCTCTATGAAAC	4627	False	NA	NA	False	NA	NA	NA	110451878	110549490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110546834
16154	chr10	+	3993	19	NIC	ENSMUSG00000005682.10	novel	4316	26	NA	NA	5638	0	intron_retention	FALSE	canonical	2	164	junction_6	38.5616389693177	2	121	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	128144904	128157216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149613_128149710_128149911_128150051_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
16155	chr3	+	2881	4	NNC	ENSMUSG00000038612.17	novel	858	4	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	362.966481464428	1194	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGTGGTATGGGTCT	6414	False	NA	NA	False	NA	NA	NA	95566095	95570490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95566209_95566751_95566799_95567071_95567320_95568017
16156	chr11	+	3055	17	NNC	ENSMUSG00000017421.19	novel	2898	17	NA	NA	15	131	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	449.060890741723	552	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCACACAAATAATAGTGTA	NA	False	NA	NA	False	NA	NA	NA	80274171	80296690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215_80286400_80286617_80286702_80289241_80289297_80293471_80293538_80294426_80294489_80295522
16157	chr14	+	1467	15	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	0	-2598	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	113.978515698426	1	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATATCCGAGCAGAGTATA	2	True	NA	NA	False	NA	NA	NA	25842606	25884630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873158_25873205_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565
16158	chr10	+	2762	11	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	29	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	464.820406178558	1	119	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATGTTTTTATTAACAA	NA	False	NA	NA	False	NA	NA	NA	128173707	128198326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188928_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
16159	chr11	-	2926	19	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	188.84333601045	1	55	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAACTTTTCTGATAGTT	NA	False	NA	NA	False	NA	NA	NA	106146904	106139969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144600_106146145_106146252_106146410_106146504_106146586
16160	chr11	-	3978	19	FSM	ENSMUSG00000020752.12	ENSMUST00000021097.10	3971	19	-7	0	-7	0	multi-exon	TRUE	canonical	3	54	junction_14	12.1025708930881	171	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGGTGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	115824310	115783420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614
16161	chr1	-	3699	3	NNC	ENSMUSG00000026558.14	novel	560	5	NA	NA	2115	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	517.5	32	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTCACTCCTTTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	167062289	167050458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_167054059_167057489_167057560_167062260
16162	chr19	+	1900	5	FSM	ENSMUSG00000071645.7	ENSMUST00000236564.2	1858	5	-92	50	-9	-50	multi-exon	FALSE	canonical	3	135	junction_1	17.1955662890176	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTATCACTTTGCATT	1348	False	NA	NA	False	NA	NA	NA	8931201	8940815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707
16164	chr3	+	3539	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	27	-409	27	409	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	849	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAGCCAATACTTAACT	NA	False	NA	NA	False	NA	NA	NA	58484083	58500963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
16165	chr1	-	2376	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	44	5782	8	-5	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	84	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTTGCCAGACTTAATA	NA	False	NA	NA	False	NA	NA	NA	86287078	86278222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
16166	chr11	+	1968	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	65	451	-42	178	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	3	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCCATATTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	22940583	22953329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
16167	chr10	+	2633	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	-33	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	618.176192970544	2	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGATCAAAAGTGTCATA	NA	False	NA	NA	False	NA	NA	NA	41395463	41407032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667_41405794_41406016
16168	chr13	+	5138	13	FSM	ENSMUSG00000032727.15	ENSMUST00000109272.9	5279	13	140	1	-7	-1	multi-exon	FALSE	canonical	3	88	junction_1	13.5800098183568	136	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGGGTCGTGTGACTA	NA	False	NA	NA	False	NA	NA	NA	111822851	111855129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_111822889_111824361_111824387_111827769_111827916_111840162_111840298_111841755_111841877_111842535_111842622_111843171_111843248_111844747_111844900_111846259_111846342_111848219_111848315_111850774_111850903_111850978_111851122_111851217
16169	chr19	-	2741	15	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	-42	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	457.255700358349	10	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAATTGGTGTTAGTGTT	8697	False	NA	NA	False	NA	NA	NA	60779138	60749564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60749927_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
16170	chr4	+	2198	15	NIC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	31	-1	combination_of_known_splicesites	FALSE	canonical	3	12	junction_3	194.018106140133	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTGTGTTCGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	124923815	124949172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124923988_124928030_124928116_124929007_124929103_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
16172	chr4	+	2204	8	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1010.79833068032	6	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	16	True	NA	NA	False	NA	NA	NA	40722502	40733900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722634_40723702_40723845_40723972_40724171_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
16173	chr1	-	2341	10	NIC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	775.685073553264	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCCTGATGGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	125363284	125320647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_125321828_125322804_125322889_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
16175	chr14	+	4187	24	FSM	ENSMUSG00000039367.12	ENSMUST00000223751.2	4196	24	8	1	-3	-1	multi-exon	FALSE	canonical	1	10	junction_4	106.764674177248	2	118	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCCCTCTCATTACTCGC	NA	False	NA	NA	False	NA	NA	NA	20724418	20744917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732844_20733376_20733531_20733952_20734090_20735279_20735349_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
16176	chr9	+	1558	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	40	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1720.47177799837	2	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGTTGTCCTTCCTTAG	NA	False	NA	NA	False	NA	NA	NA	108765740	108778690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771194_108773120_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
16177	chr2	-	3077	27	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	54	-1642	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.8061690627279	53	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAATGTTTTGTGTTATT	NA	False	NA	NA	False	NA	NA	NA	62242149	62162058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62162422_62162743_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216575_62216867_62217408_62217505_62241558_62241644_62242129
16178	chr1	+	2027	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-54	7534	-16	0	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	30	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724113	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
16181	chr6	+	2538	10	NNC	ENSMUSG00000013736.17	novel	785	2	NA	NA	-26	-5	intron_retention	FALSE	canonical	2	15	junction_1	419.375579335767	4	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTCTTTGTCGTTATT	NA	False	NA	NA	False	NA	NA	NA	106746220	106759430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_106746458_106746790_106746965_106747762_106747877_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
16182	chr6	+	2126	8	NNC	ENSMUSG00000000439.10	novel	6230	8	NA	NA	22	-3950	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	176.094014778516	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATTAAGAAAACCTGTATT	NA	False	NA	NA	False	NA	NA	NA	115578884	115595635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_115578975_115586541_115586623_115587563_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
16183	chr10	+	2733	13	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	2	-62	intron_retention	FALSE	canonical	3	18	junction_9	472.699252520388	1	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCAGATGGTGTATTG	1591	False	NA	NA	False	NA	NA	NA	79690468	79700131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
16185	chr14	-	2212	14	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	-5	intron_retention	FALSE	canonical	3	775	junction_9	84.7561067601391	2455	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCATGTGTTTAAGATTT	NA	False	NA	NA	False	NA	NA	NA	30741018	30734395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
16186	chr7	-	2111	14	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	308.169437756024	55	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGGTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	143102841	143067320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081044_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
16187	chr10	+	3345	9	ISM	ENSMUSG00000020064.10	ENSMUST00000219577.2	3914	26	60519	175	735	-103	3prime_fragment	FALSE	canonical	3	311	junction_1	31.3106910655131	187	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTTTAAGAGTTTGCAT	NA	False	NA	NA	False	NA	NA	NA	63140220	63153482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
16188	chr5	-	2444	5	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	48	-12826	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	85.0147046104378	3	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTTGGTCTTGGTATT	NA	False	NA	NA	False	NA	NA	NA	109944116	109930098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109931814_109932961_109933023_109933207_109933335_109935505_109935979_109944048
16189	chr10	-	2671	17	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	339	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.591193837092	18	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175982	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105314_62111497_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131547_62131615_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
16190	chr12	+	2870	1	Genic_Genomic	ENSMUSG00000079179.10	novel	NA	NA	NA	NA	10901	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTGTTAGGCCATGTCT	NA	False	NA	NA	False	NA	NA	NA	3297511	3300381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_3297500_3300400
16191	chr19	-	1251	7	FSM	ENSMUSG00000024997.8	ENSMUST00000025961.7	1478	7	71	156	71	-156	multi-exon	FALSE	canonical	3	658	junction_4	52.5148127251308	154	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATTGTAGTCATTAACT	1518	False	NA	NA	False	NA	NA	NA	60862923	60852644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
16192	chrX	-	3047	15	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	519	-56486	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_14	93.2665972536004	138	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	59223930	59157804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
16193	chr4	+	3478	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43236	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	132.859324098838	1	176	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147533637	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533956_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597093_147597930
16194	chr2	-	3489	18	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	1570	0	intron_retention	FALSE	non_canonical	0	0	junction_9	183.962930672437	2	115	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5015585	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003652_5004490_5004588_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499
16196	chr15	+	2192	8	NNC	ENSMUSG00000023010.16	novel	2452	10	NA	NA	517	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	652.698542786103	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGTGTCTCAGTGTT	4237	False	NA	NA	False	NA	NA	NA	99299482	99307926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303852_99304464_99304559_99305148_99305225_99306355
16197	chr12	-	2714	5	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	0	2	intron_retention	FALSE	canonical	3	16	junction_4	22.1288838399048	62	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008975	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008036_77008064_77008763
16198	chr7	-	1899	16	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	19	-456	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	689.309748145845	112	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165564	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151280_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
16199	chr6	+	3973	12	FSM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	81	-344	81	344	multi-exon	FALSE	canonical	3	253	junction_5	31.0917065288484	192	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCATTTTTGTTTGTTCC	-18	True	NA	NA	False	NA	NA	NA	8209302	8236618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_8209412_8211579_8211639_8214765_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
16200	chr2	-	2972	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	2	468	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57.2362155894325	396	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTACCTCCTATAGACTG	NA	False	NA	NA	False	NA	NA	NA	29677681	29665653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29666650_29666720_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
16201	chr9	-	4006	17	NNC	ENSMUSG00000032480.18	novel	3806	19	NA	NA	20	0	intron_retention	FALSE	canonical	0	0	junction_5	151.214859037563	1	103	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109930086	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914634_109914752_109915100_109915187_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
16203	chr2	+	3147	1	Antisense	novelGene_ENSMUSG00000035949.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCCAGGGGATCTGATGC	NA	False	NA	NA	False	NA	NA	NA	34701190	34704337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_34701200_34704300
16204	chr6	-	2215	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	4	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTTGTCTCATGACTT	NA	False	NA	NA	False	NA	NA	NA	148847886	148822559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148822703_148823078_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
16205	chr8	-	4404	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	219	4	80	-4	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	220	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGAGGTTTTGGTGACTT	1987	False	NA	NA	False	NA	NA	NA	105169460	105144315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
16206	chr6	+	3814	13	NIC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	3	-430	intron_retention	FALSE	canonical	3	30	junction_4	60.5421684998701	119	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGGGTCTTCTTGCAG	9769	False	NA	NA	False	NA	NA	NA	86381288	86409779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
16207	chr2	+	4746	32	NNC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	3	14	intron_retention	FALSE	non_canonical	0	0	junction_31	79.7062113318023	1	221	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACTTCCTCCTAGACTA	NA	False	NA	NA	False	NA	NA	NA	180961557	180997824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980027_180980148_180980848_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180997346_180997443_180997601_180997716
16208	chr5	-	3034	11	NIC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-5	-4	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	110.515564514687	250	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCTAGTTTCTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	5609528	5587457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5604823_5604900_5605237_5605383_5606064_5606157_5607212_5607407_5609432
16209	chr14	+	1983	9	Antisense	novelGene_ENSMUSG00000060373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCCCGAGCTCCTCTGCC	6100	False	NA	NA	False	NA	NA	NA	52311004	52341461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52311780_52312385_52312620_52312713_52312873_52313069_52313186_52314861_52315023_52318718_52318765_52319284_52319361_52321571_52321872_52341345
16210	chrX	+	2321	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	293	52	-22	-48	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTATATTTCACAGAAAAC	6241	False	NA	NA	False	NA	NA	NA	73348896	73355416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
16211	chr1	+	2737	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	678	at_least_one_novel_splicesite	FALSE	canonical	2	31	junction_3	717.139211652026	2	66	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTAGGTTTTCTTAGCTAC	NA	False	NA	NA	False	NA	NA	NA	59724146	59751347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724274_59729644_59729722_59731495_59731549_59731710_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
16212	chr17	-	3055	8	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	1	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.6580397946727	7	93	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGAACTTGGCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	22533817	22504858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22506039_22506559_22507883_22508749_22508877_22511388_22511437_22528185_22528296_22528485_22528579_22532217_22532302_22533727
16214	chr15	+	2291	10	NNC	ENSMUSG00000023010.16	novel	2452	10	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	590.768635124541	2	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99290889	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303636_99303763_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
16215	chr4	-	3446	5	NIC	ENSMUSG00000008489.19	novel	3730	7	NA	NA	-6	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	45.0638435999416	4	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACTGTGTATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	91260277	91139004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_91141808_91152228_91152383_91169450_91169555_91196847_91197092_91260136
16216	chr6	-	1463	6	NNC	ENSMUSG00000030057.16	novel	1661	5	NA	NA	11	-100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4542.52878471893	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGGGGAGTTTTGACTAA	NA	False	NA	NA	False	NA	NA	NA	87828030	87820163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820373_87820438_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
16217	chr6	-	1274	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	142	185	0	-185	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCTGTATTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	124791117	124787739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
16218	chr1	+	2454	14	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	28	-5	intron_retention	FALSE	canonical	0	0	junction_4	583.056484318051	12	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTACTCTCGTGTTGTG	3175	False	NA	NA	False	NA	NA	NA	180396521	180428812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406938_180418846_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
16220	chr15	+	2383	11	FSM	ENSMUSG00000023010.16	ENSMUST00000160635.8	871	11	0	-1512	0	-1	multi-exon	FALSE	canonical	3	18	junction_1	734.518481727996	2225	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99290866	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99290922_99291575_99291612_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
16221	chr13	-	3149	10	NNC	ENSMUSG00000021556.13	novel	3954	10	NA	NA	4	-464	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	159.654488053282	1	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCACAAAGCCAGATTGA	NA	False	NA	NA	False	NA	NA	NA	59823621	59783273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797513_59798509_59798565_59812011_59812192_59813340_59813491_59823540
16223	chr17	-	2387	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	-70	3	-8	1	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	1037	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34250664	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
16224	chr11	-	2483	11	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	0	intron_retention	FALSE	canonical	0	0	junction_9	586.013045929867	1	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGCTGCTTTATTTT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462344_120462554_120463482
16225	chr4	+	2591	9	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	304	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	276.586785656871	17	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTCTCAGATGATC	5352	False	NA	NA	False	NA	NA	NA	89055662	89099305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089465_89090381_89090622_89094380_89094495_89095039_89095163_89097704
16226	chr5	+	3126	15	NNC	ENSMUSG00000028954.12	novel	3546	15	NA	NA	-5	-24	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	203.35669125345	828	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACATGGGGAACGCA	NA	False	NA	NA	False	NA	NA	NA	24890979	24915350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24901948_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
16227	chr5	-	2975	16	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	-18	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	381.197353377778	712	33	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGGATCACTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	38718996	38684157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687114_38687193_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692682_38694479_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704323_38704435_38708719_38708811_38718422_38718545_38718858
16228	chr4	-	2938	10	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	499.603571239299	1	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGTGTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	141327188	141303377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304927_141304972_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
16229	chr17	-	2920	5	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	1475	-1024	intron_retention	FALSE	canonical	3	434	junction_4	23.2096423927643	1	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACATCAAGGCATTTCAAT	NA	False	NA	NA	False	NA	NA	NA	53994831	53982837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111
16230	chr12	+	3291	5	NNC	ENSMUSG00000043061.11	novel	762	3	NA	NA	-2947	-8	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	76.7475569643751	2	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTGATAATATACAGTGT	NA	False	NA	NA	False	NA	NA	NA	30631477	30641206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_30631943_30635468_30635590_30637198_30637254_30638472_30638567_30638650
16231	chr19	+	1558	1	Intergenic	novelGene_1289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTAACTCTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	53369901	53371459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_53369900_53371500
16232	chr1	-	2391	10	NIC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	-26	-10	combination_of_known_junctions	FALSE	canonical	3	34	junction_9	367.996712277316	1392	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCTTTGAAGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	65225685	65197786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65220786_65220858_65225463
16233	chr16	-	1736	14	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-10	132	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	1353.93327516886	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACATGACTGTTCTCATTG	NA	False	NA	NA	False	NA	NA	NA	87292771	87280743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
16235	chr17	+	4431	9	Intergenic	novelGene_31	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	60.1434483131787	133	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGACAGAAGTGTAACAAT	NA	False	NA	NA	False	NA	NA	NA	17225424	17264842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225539_17247918_17248017_17257537_17257665_17257906_17257968_17259258_17259615_17260037_17260878_17261045_17261312_17261732_17262833_17263373
16236	chr11	-	3921	8	NNC	ENSMUSG00000020390.13	novel	585	7	NA	NA	27	407	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	349.122982833925	21	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGACTTTGTCACTTATT	NA	False	NA	NA	False	NA	NA	NA	51891279	51877086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51877638_51879438_51879528_51882220_51882497_51882731_51883091_51884073_51884394_51885330_51885387_51886615_51888726_51891119
16237	chr19	-	2602	9	NNC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	27	-1990	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	134.75342064304	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTATTTCAGAAAAATCCAT	NA	False	NA	NA	False	NA	NA	NA	43741412	43723682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737332_43739941_43739974_43741260
16239	chr2	+	2520	8	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_3	838.704686418532	1	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117057_130117573_130117745_130117895_130118095_130118355_130119053_130119395_130120211_130120816
16240	chr2	-	4023	6	NNC	ENSMUSG00000027109.17	novel	3808	6	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	186.301261402064	387	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGCTTGAAAAAGTCTAA	2874	False	NA	NA	False	NA	NA	NA	72810801	72766773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809864_72809977_72810593
16241	chr9	+	1788	13	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-3	4	intron_retention	FALSE	canonical	3	1280	junction_12	394.836701477121	277	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1145	False	NA	NA	False	NA	NA	NA	108437634	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442445_108442525_108442610_108442696
16242	chr7	-	1863	9	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-23	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	706.534146379352	8	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGCTCTGTACTGTT	8842	False	NA	NA	False	NA	NA	NA	141941617	141929646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931121_141934537_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
16243	chr14	-	2522	12	NNC	ENSMUSG00000021814.18	novel	2851	13	NA	NA	-6	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	282.654097516691	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCTTAAAAACCACAGCT	8164	False	NA	NA	False	NA	NA	NA	20530015	20505360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20519500_20519558_20521435_20521641_20523342_20523398_20529962
16244	chr14	+	3374	7	FSM	ENSMUSG00000040997.15	ENSMUST00000239403.2	2406	7	4	-972	4	-496	multi-exon	FALSE	canonical	3	303	junction_1	38.1200588783502	731	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGATATAATAATAATAAAT	NA	False	NA	NA	False	NA	NA	NA	54496692	54507598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
16245	chr14	+	3305	6	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	63	1269	at_least_one_novel_splicesite	FALSE	non_canonical	3	73	junction_4	702.002450138174	21	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAAGTTAAGCAGTTT	1749	False	NA	NA	False	NA	NA	NA	26359291	26379682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374301_26375025_26375118_26377050
16246	chr3	-	3863	18	NIC	ENSMUSG00000027889.18	novel	3586	19	NA	NA	-15	0	intron_retention	FALSE	canonical	3	124	junction_17	33.4984377056561	171	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993982	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
16248	chr1	+	3308	8	ISM	ENSMUSG00000026584.15	ENSMUST00000162234.2	4336	14	11246	2	-64	-2	3prime_fragment	FALSE	canonical	3	75	junction_2	11.3137084989848	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACAATGGTTACAATTAT	6415	False	NA	NA	False	NA	NA	NA	163768619	163782676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
16249	chr19	-	830	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236178.2	870	8	-14	54	0	-3	multi-exon	FALSE	canonical	3	24	junction_5	202.991002112841	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCAGATAAGTGCTGTAG	NA	False	NA	NA	False	NA	NA	NA	4889315	4875447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884267_4884339_4888858_4888932_4889224
16250	chr17	+	2257	2	FSM	ENSMUSG00000037805.16	ENSMUST00000233852.2	693	2	-16	-1548	0	-1	multi-exon	FALSE	canonical	3	5715	junction_1	0	168	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547593_28547784
16251	chr1	+	2994	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	5	-71	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	34	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAACTGTCTAGACTCTG	NA	False	NA	NA	False	NA	NA	NA	171954333	171963989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
16252	chr6	+	3413	24	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-34	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	199.514107313276	2	114	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTACTGTCGTGGTGGAG	-6	True	NA	NA	False	NA	NA	NA	28480393	28888820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28526962_28527544_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795934_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
16253	chr17	-	2513	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	canonical	1	59	junction_4	802.898845157692	4	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAAAAGAGCCGTTCGC	NA	False	NA	NA	False	NA	NA	NA	47093579	47084836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091402_47091478_47092708_47092818_47093544
16254	chr11	-	3254	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9012	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	661.475283756248	1	105	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATTTTTACTCTTCAG	412	False	NA	NA	False	NA	NA	NA	106615232	106545061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570362_106570438_106571857_106571912_106573705_106573790_106575049_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106592021_106592121_106605727_106605755_106605844_106606011_106615208
16255	chr17	+	2017	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	732.756136484407	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGAGTTGTGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	29251646	29261867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255278_29255353_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
16256	chr7	-	3700	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	213	-1867	20	259	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	193	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTTCTTTCTTGCTTTTA	NA	False	NA	NA	False	NA	NA	NA	121666273	121636176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
16257	chr11	-	3478	9	NIC	ENSMUSG00000001036.18	novel	4317	11	NA	NA	-1	-3	combination_of_known_splicesites	FALSE	canonical	3	14	junction_8	139.818576644879	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTGGGTTTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	61470512	61408078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61470392
16258	chr13	+	2858	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	88	81	88	-81	multi-exon	TRUE	canonical	3	487	junction_1	56.3576747213722	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTCTGGCTTGTTAATA	NA	False	NA	NA	False	NA	NA	NA	8935624	8942406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
16261	chr2	+	1287	6	FSM	ENSMUSG00000033068.17	ENSMUST00000147223.8	2893	6	10	1596	-1	-1596	multi-exon	FALSE	canonical	3	112	junction_1	23.1292023208757	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAACAAAGATTAAAA	NA	False	NA	NA	False	NA	NA	NA	150591010	150603675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152
16262	chr6	+	4070	12	NIC	ENSMUSG00000029761.17	novel	4041	12	NA	NA	-6	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	61.9593308363313	3	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTGTCTCGTGCATTC	1299	False	NA	NA	False	NA	NA	NA	34686418	34752404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_34686633_34718723_34718871_34722553_34723026_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
16263	chr8	+	4816	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-1	-5	combination_of_known_splicesites	FALSE	canonical	3	102	junction_20	83.055035301232	303	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAAACACTTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	85763542	85784204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
16264	chr1	-	4674	7	NIC	ENSMUSG00000026694.20	novel	4541	8	NA	NA	26	8	intron_retention	FALSE	canonical	3	51	junction_5	18.508256415869	6	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTTTATCTCAAGTATT	NA	False	NA	NA	False	NA	NA	NA	162376065	162361239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162371955_162373336_162374097_162375672
16266	chr17	+	2112	14	NNC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-920	7525	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1261	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTCCACCTCAGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	45896125	45906828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45896708_45897018_45897232_45898153_45898240_45898487_45898597_45899214_45899312_45899926_45900000_45900132_45900229_45900336_45900475_45900606_45900746_45900847_45901054_45901184_45901262_45903101_45903188_45904257_45904356_45906716
16267	chr8	-	2434	9	NNC	ENSMUSG00000052926.17	novel	2981	10	NA	NA	-633	8	intron_retention	FALSE	canonical	2	3	junction_8	382.855206801475	2	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCTATTTATTTATTT	6785	False	NA	NA	False	NA	NA	NA	85694138	85683230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694032
16268	chr3	+	2587	15	NIC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	1	-342	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	347.765351632273	1	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAACTTTCTACTTGTT	4850	False	NA	NA	False	NA	NA	NA	34074247	34124129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
16269	chr19	-	2933	8	NNC	ENSMUSG00000024764.11	novel	3231	8	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.715695483001	1	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	NA	False	NA	NA	NA	7218412	7203037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7205323_7205744_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
16271	chrX	-	2530	14	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	44	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	425.827617426716	2	58	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTAAGTGTGCTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	93585552	93579082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93583781_93583871_93584154_93584856_93584931_93585497
16272	chr11	-	1918	15	NNC	ENSMUSG00000014195.17	novel	1900	15	NA	NA	3	13	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_11	939.864083204566	3183	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCAGCTGCTCTGTAC	5894	False	NA	NA	False	NA	NA	NA	100510482	100473630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100489828_100489916_100490010_100490136_100492553_100492643_100510353
16273	chr15	-	1796	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	36	21	-28	-21	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	249	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTAACTGCTTCCACTT	NA	False	NA	NA	False	NA	NA	NA	31601914	31590966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
16274	chr3	-	3603	19	FSM	ENSMUSG00000027889.18	ENSMUST00000102637.8	3586	19	-15	-2	-15	0	multi-exon	FALSE	canonical	3	124	junction_18	33.5369705707258	17	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993982	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
16275	chr19	+	2848	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	-311	19	-311	-19	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	515	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTTAACTTCTCTGA	1481	False	NA	NA	False	NA	NA	NA	5416457	5421535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
16276	chr8	+	2266	15	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	22	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	475.760872879712	8	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAGTAGTGCTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	75836225	75854317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75842486_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
16277	chr17	-	1843	2	Genic_Genomic	ENSMUSG00000066878.6	novel	1988	1	NA	NA	7	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACTTTGAG	NA	False	NA	NA	False	NA	NA	NA	90217870	90215892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_90216211_90216345
16278	chr6	-	2145	3	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-5	2171	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGGCTGGAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	48502029	48499316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_48500391_48500868_48501751_48501840
16279	chr2	+	1105	1	ISM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	1995	13	1971	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	NA	False	NA	NA	NA	28360072	28361177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28360100_28361200
16280	chr16	+	1976	12	NNC	ENSMUSG00000022841.16	novel	2937	12	NA	NA	-15	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1054.32479666349	6	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTTGTTTTGTTTGGGT	1379	False	NA	NA	False	NA	NA	NA	20354253	20362802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060_20362242_20362322
16282	chrX	+	2849	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	65	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	248.772481396154	3	77	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799488	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805840_150811042_150811178_150811960_150812044_150812186_150812322_150816757_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
16283	chr4	-	3286	14	Antisense	novelGene_ENSMUSG00000092862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	103	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAGGAAACAGAAAATAGAC	NA	False	NA	NA	False	NA	NA	NA	41012981	40976352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40977341_40984890_40985049_40986689_40986770_40988620_40988726_40990787_40990869_40991749_40991883_40993757_40993859_40993962_40994179_40996812_40996925_41003010_41003091_41004321_41004438_41004827_41004944_41009186_41009271_41012065
16284	chr5	+	1806	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-106	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1064.7410860143	87	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	650	False	NA	NA	False	NA	NA	NA	77099517	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114733_77115046
16285	chr5	-	2887	6	NNC	ENSMUSG00000029433.17	novel	1576	6	NA	NA	-3	-14	intron_retention	FALSE	canonical	0	0	junction_1	271.715292171788	251	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGACCACCAGGGACCAG	8959	False	NA	NA	False	NA	NA	NA	123662202	123649781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123650771_123654437_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
16286	chr17	+	1176	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	109	4576	66	-58	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	303	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAACCAAATAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	13226812	13234445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
16287	chr7	+	2102	8	NNC	ENSMUSG00000066979.7	novel	2218	8	NA	NA	-59	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	485.934697888765	26	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCAGGTGTGTTACCTT	NA	False	NA	NA	False	NA	NA	NA	131161891	131173622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_131162008_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
16288	chr6	-	2459	6	NNC	ENSMUSG00000004980.17	novel	1542	11	NA	NA	-7	0	intron_retention	FALSE	non_canonical	0	0	junction_2	3417.78021528594	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	NA	False	NA	NA	NA	51446813	51438103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51440433_51443490_51443686_51443885_51444033_51444164_51444276_51446650
16289	chr2	+	5695	12	NIC	ENSMUSG00000033955.14	novel	5885	10	NA	NA	20	-2	combination_of_known_splicesites	FALSE	canonical	3	133	junction_1	44.7158152361265	126	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTGGGGTTGTCCAGGA	NA	False	NA	NA	False	NA	NA	NA	84878418	84903380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84878480_84881204_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84892231_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
16290	chr6	-	3159	5	NIC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	35	-266	intron_retention	FALSE	canonical	3	795	junction_4	92.6620202672055	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGGGAGAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	120893724	120870080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
16291	chr11	-	2107	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	2	0	2	0	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	2423	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	35725331	35699207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
16292	chr5	-	1929	10	NNC	ENSMUSG00000029246.15	novel	3981	11	NA	NA	-15927	-36273	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTAGCCCCGCCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	77115352	77099163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_77099247_77099612_77099681_77104390_77104588_77107158_77107204_77108996_77109135_77109237_77109352_77110271_77110356_77112286_77112468_77114091_77114252_77114493
16293	chr12	+	2426	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	877	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516889	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565772_86567247
16294	chr12	+	2804	8	NNC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	104.401305801514	449	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	NA	False	NA	NA	NA	8258157	8335759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8330721_8330828_8333899
16295	chr3	-	1803	12	NNC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	4	35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	786.553366496583	222	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACCTTGTCTCTGCTGGG	NA	False	NA	NA	False	NA	NA	NA	108352510	108333892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336677_108336727_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
16296	chr2	-	4796	13	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	0	108	intron_retention	FALSE	canonical	3	352	junction_6	46.5259784063341	32	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGCATGGTCCATAAAATG	NA	False	NA	NA	False	NA	NA	NA	48839253	48795219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48826875_48827463_48827541_48830344_48830413_48839128
16298	chrX	+	2077	17	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	1	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	202.462409705481	4	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	56454514	56534133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463130_56463576_56463639_56467202_56467331_56468624_56468741_56478571_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
16299	chr18	+	2302	8	NNC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	31	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	192.643267651451	185	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATGTGCAGTTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	21134995	21160582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21143733_21143850_21148712_21148785_21150875_21150933_21153944_21154057_21157465_21157574_21159142
16301	chr10	-	3431	9	ISM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	35370	0	-6797	0	3prime_fragment	FALSE	canonical	3	342	junction_7	48.2778417081791	2	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	60948053	60934420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940
16302	chr2	-	3388	3	ISM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	11790	6	532	-6	3prime_fragment	FALSE	canonical	3	593	junction_2	26	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGAGGCGGGCTTGTGTG	4431	False	NA	NA	False	NA	NA	NA	168597331	168590257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168592381_168594373_168594661_168596353
16303	chr19	-	1479	10	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	596.428588959647	1	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGCTTGTCTGGAACTT	6569	False	NA	NA	False	NA	NA	NA	4062663	4057504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059347_4059534_4059825_4060010_4061101_4061273_4061345_4061402_4062550
16305	chr2	+	7797	32	NNC	ENSMUSG00000038241.17	novel	7977	33	NA	NA	5294	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	24.9015961358798	72	143	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGGCTGCTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	155803807	155840820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812093_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308_155818479_155821063_155821232_155821631_155821767_155823302_155823426_155825202_155825337_155827153_155827293_155827738_155828082_155828914_155829037_155830231_155830353_155831418_155831541_155832135_155834695_155836490_155836605_155836764_155836912_155837238_155837341_155838191_155838255_155840087
16307	chr15	+	3009	11	NIC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-2484	-22	intron_retention	FALSE	canonical	3	1727	junction_3	149.910139750452	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATCCATATCTATT	NA	False	NA	NA	False	NA	NA	NA	81788795	81799312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
16308	chr16	-	1841	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-21	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1300.15069770188	2	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292782	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287397_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
16309	chr5	-	3360	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-9	0	intron_retention	FALSE	non_canonical	0	0	junction_1	462.5	1	130	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963417	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135940061_135940184_135940506_135963176
16310	chr19	-	1765	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.93458700951	51	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902344	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883008_15883328_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
16312	chr10	-	6432	10	FSM	ENSMUSG00000020170.5	ENSMUST00000020381.5	6420	10	-10	-2	-10	2	multi-exon	FALSE	canonical	3	66	junction_1	21.0226215606891	85	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAAAGTTTTACTGTATTT	NA	False	NA	NA	False	NA	NA	NA	116984425	116905329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116910785_116912715_116912880_116913416_116913576_116914664_116914852_116916926_116917019_116920936_116921029_116935847_116935873_116936530_116936574_116938017_116938104_116984296
16313	chr15	-	4440	33	NIC	ENSMUSG00000022607.19	novel	4675	34	NA	NA	0	-19	combination_of_known_junctions	FALSE	canonical	3	34	junction_31	46.9187191954075	153	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTGGCGCCGGGAAAG	1790	False	NA	NA	False	NA	NA	NA	73294927	73076969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73236889_73237045_73266496_73266594_73294857
16314	chr15	-	1980	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	390	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	1954	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGACCCTGCCAGCGTTT	NA	False	NA	NA	False	NA	NA	NA	83056403	83037701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038742_83038786_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
16315	chr3	-	2511	15	NIC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	411	junction_8	20.1475425148517	94	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAGTATGATATTTTTCA	NA	False	NA	NA	False	NA	NA	NA	95763095	95737931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
16316	chr17	+	3681	8	NNC	ENSMUSG00000034681.18	novel	1816	8	NA	NA	25	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	542.772474600245	1	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGAGTGCTGGTTTTA	957	False	NA	NA	False	NA	NA	NA	24633692	24644868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641913_24642082_24643518_24644059
16317	chrX	-	2582	12	NIC	ENSMUSG00000031400.11	novel	2652	13	NA	NA	-32	-15	intron_retention	FALSE	canonical	3	267	junction_7	20.1506721172486	27	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAAACAGTTTTACCTGT	NA	False	NA	NA	False	NA	NA	NA	73472518	73453103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
16318	chr19	+	3350	4	Antisense	novelGene_ENSMUSG00000071660.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGGCCGGAAGCATTG	NA	False	NA	NA	False	NA	NA	NA	8786450	8796550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_8789203_8793217_8793401_8795799_8796051_8796386
16320	chr5	-	2519	16	NIC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	-4	1	intron_retention	FALSE	canonical	3	1165	junction_7	283.279241895499	1712	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCTGAAGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	122959361	122925792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122926082_122926364_122926528_122929670_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
16321	chr5	-	3832	12	FSM	ENSMUSG00000029192.18	ENSMUST00000171385.8	3884	12	47	5	-28	-2	multi-exon	FALSE	canonical	3	47	junction_11	14.7609043598508	134	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTATGTTCACTGTGTAC	8831	False	NA	NA	False	NA	NA	NA	36687920	36647953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36687766
16324	chrX	-	3524	12	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTAGC	NA	False	NA	NA	False	NA	NA	NA	143134357	143119681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256
16325	chr4	-	1880	14	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	35	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	336.308149763923	81	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2527	False	NA	NA	False	NA	NA	NA	129229128	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203675_129203811_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129225654_129225715_129228289_129228438_129229010
16326	chr14	+	3115	23	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	17	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	151.422210888671	1	56	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTATTGGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	56640173	56726888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724513_56726767
16327	chr6	-	2172	11	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	-19	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	231.585491773556	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTCTTGTTTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	95695800	95451116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632525_95632581_95695669
16328	chr3	-	2383	8	NIC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	12	-2	intron_retention	FALSE	canonical	3	355	junction_5	281.111060919752	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGGCTGTTGTGTATAT	6128	False	NA	NA	False	NA	NA	NA	153618618	153612931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153617670_153618570
16329	chr5	+	3347	17	Antisense	novelGene_ENSMUSG00000029657.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	112	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGAACTTTCCAGAATC	NA	False	NA	NA	False	NA	NA	NA	149540319	149559747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_149541175_149541850_149542013_149542209_149542331_149542425_149542528_149543335_149543447_149543987_149544147_149546927_149547062_149548433_149548640_149550718_149550852_149551000_149551109_149552671_149552890_149553247_149553455_149554126_149554323_149554849_149554973_149555496_149555640_149557294_149557353_149559436
16330	chr1	+	2465	21	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	154.243273759344	1	26	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	328	False	NA	NA	False	NA	NA	NA	72346591	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420809_72422516_72422614_72422860_72422929_72433054_72433127_72433866
16332	chr5	+	3349	16	FSM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	25	-330	25	330	multi-exon	FALSE	canonical	3	235	junction_10	31.6406208676266	511	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCTCCTAAGTGCTG	4953	False	NA	NA	False	NA	NA	NA	130285900	130370734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
16333	chr4	+	2666	24	NNC	ENSMUSG00000017264.17	novel	2816	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	126.912380652752	352	13	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	148642911	148666850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647579_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
16334	chr7	+	2859	14	NNC	ENSMUSG00000038943.17	novel	3026	14	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	459.665262823018	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	79944259	79965999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950117_79950798_79950908_79954108_79954343_79954428_79954600_79955665_79955800_79956122_79956271_79957306_79957444_79959142_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
16335	chr16	+	2755	4	ISM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	77	3456	47	2659	5prime_fragment	FALSE	canonical	3	112	junction_3	8.80656320908194	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTGGTCATAGTATC	NA	False	NA	NA	False	NA	NA	NA	97798610	97813859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318
16336	chrX	+	2422	14	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	962.742489241914	1	82	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTTTGAATTTGCTTTT	NA	False	NA	-14	True	NA	NA	NA	74139710	74153379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140489_74140885_74140976_74142067_74142150_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150882_74152301
16338	chr15	+	1372	11	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	5245	0	-275	5prime_fragment	FALSE	canonical	3	1727	junction_10	116.36670486011	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTTGCATCGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	81756684	81794089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042
16339	chr9	-	4080	7	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	5189	0	intron_retention	FALSE	canonical	3	74	junction_6	54.0732527842247	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	27032657	27008679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27032579
16340	chr10	-	3519	7	NIC	ENSMUSG00000019814.6	novel	2297	11	NA	NA	26	-457	intron_retention	FALSE	canonical	3	645	junction_3	49.8723370216396	19	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAATTGGTGTGCTCATTT	NA	False	NA	NA	False	NA	NA	NA	13068886	13054340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_13054741_13054866_13056762_13058022_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
16341	chr2	+	3138	8	NNC	ENSMUSG00000037523.14	novel	3057	7	NA	NA	26	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	79.2778631891446	4	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAAATCTTGTGAGTTCC	7328	False	NA	NA	False	NA	NA	NA	131076050	131089938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_131076276_131079346_131079461_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
16342	chrX	-	3247	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	88	5	-3	2	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	7	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAACTAGCTTGTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	36127811	36112200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
16343	chrX	-	4182	8	NIC	ENSMUSG00000031297.15	novel	2717	11	NA	NA	147	-4	intron_retention	FALSE	canonical	3	1326	junction_3	67.4261500775902	1	159	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTGTAAAAAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	100128811	100122831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126253_100126396_100126575_100126753
16344	chr14	-	1494	11	Fusion	ENSMUSG00000091649.4_ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	-13	intron_retention	FALSE	non_canonical	0	0	junction_1	110.872900205596	11	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGTCAAAAGGACTGAAGA	NA	False	NA	NA	False	NA	NA	NA	59607998	59558425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_59558511_59586274_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
16345	chr6	+	2546	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	9	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	279.043286168214	1	69	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTACCACTCCTAGTTG	5446	False	NA	NA	False	NA	NA	NA	125108880	125121700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111515_125111695_125113875_125113932_125114017_125114203_125114317_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
16346	chr5	+	2500	11	NNC	ENSMUSG00000029131.15	novel	2918	10	NA	NA	-17	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	721.586924770675	30	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTTATACATTTATT	4578	False	NA	NA	False	NA	NA	NA	29940969	29991459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986298_29986414_29986449_29990028
16347	chr6	+	742	1	Antisense	novelGene_ENSMUSG00000084319.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCGCTAGCCTGACAGCGC	NA	False	NA	NA	False	NA	NA	NA	99854571	99855313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_99854600_99855300
16348	chr18	-	4247	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	9	71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	69.3757719411201	1	110	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAACACTTAGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	62681746	62637154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639817_62640958_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
16349	chr6	-	2670	8	Antisense	novelGene_ENSMUSG00000040242.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCGACAAGCCTCGCGAG	1509	False	NA	NA	False	NA	NA	NA	146500676	146479433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_146479705_146487177_146487319_146490238_146490358_146491394_146491533_146494129_146494246_146496673_146496786_146498790_146499821_146499933
16350	chr5	-	3177	6	NNC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	-11	54	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	97.8774744259373	55	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTTATAATCTTTTG	5461	False	NA	NA	False	NA	NA	NA	150589053	150566410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_150566781_150570465_150570543_150570924_150572122_150573994_150574205_150584743_150585979_150588965
16351	chr15	-	2955	9	NIC	ENSMUSG00000054115.13	novel	3118	10	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	65.7419196555744	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAAGTACTTGAGCTGCT	NA	False	NA	NA	False	NA	NA	NA	9140439	9112078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9127972_9128085_9139518_9139791_9140270
16352	chr1	-	3143	7	NIC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-61	25	intron_retention	FALSE	canonical	3	189	junction_6	86.8939327890938	14	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAAGCTGGTTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	13197448	13183655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13196081_13197333
16354	chr4	-	2746	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	89	-400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	685.629611994516	1	85	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATTACAAAAGCGATA	9904	False	NA	NA	False	NA	NA	NA	43000344	42980362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983140_42983360_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
16355	chr2	+	2622	16	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	400.331673601888	4	64	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867525	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873112_84874721_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
16356	chr3	+	1511	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-23	0	-23	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	5417	False	NA	NA	False	NA	NA	NA	54388835	54390346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54388800_54390300
16357	chr11	-	2962	10	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	24	-9	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	34.292136376784	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATAAATTATTGTGTGT	1415	False	NA	NA	False	NA	NA	NA	61157929	61135687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144579_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
16358	chr19	+	3562	11	FSM	ENSMUSG00000117789.2	ENSMUST00000236560.2	3572	11	8	2	8	-2	multi-exon	FALSE	canonical	3	75	junction_1	52.550547095154	869	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGGTGTGGCTGATGT	275	False	NA	NA	False	NA	NA	NA	5088926	5099938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5090061_5090334_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
16359	chr14	+	2131	10	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	-1	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	515.589630100012	2043	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACACGCGTTTGTTTCCA	9013	False	NA	NA	False	NA	NA	NA	55777844	55786372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779907_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
16360	chr11	+	2790	11	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	37	-10	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	127.924039961221	12	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGCCAGCCTCCGTCC	NA	False	NA	NA	False	NA	NA	NA	102139744	102156003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102139919_102141504_102141556_102145155_102145446_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
16362	chrM	+	959	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	657	-71	657	71	mono-exon	FALSE	NA	NA	NA	NA	NA	4	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	87	False	NA	98	True	NA	NA	NA	5984	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6000_6900
16363	chr1	+	3850	12	NNC	ENSMUSG00000026353.10	novel	4113	13	NA	NA	210	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	113.757608046362	1	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCTGCATTTTGCTCTTT	304	False	NA	NA	False	NA	NA	NA	128172108	128207113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194204_128200557_128200690_128202538_128202742_128204693
16364	chr8	+	3808	9	NNC	ENSMUSG00000011306.8	novel	2963	8	NA	NA	-28	969	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	155.925813690357	14	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAGCAACTTGTGGAAGA	2129	False	NA	NA	False	NA	NA	NA	70495434	70520530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70519709_70520081
16365	chr2	-	1819	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	37	6	8	0	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	24	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	False	NA	NA	False	NA	NA	NA	172212418	172198115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
16367	chr11	+	5067	9	NIC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	-1	-5	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	219.953652788491	36	127	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACAAAAATCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	104122303	104222911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104212176_104212259_104213253_104213367_104218797
16368	chr1	-	2661	16	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	101.925768195399	261	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTAGAGTCTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	160898233	160869070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
16369	chr11	+	2826	12	NNC	ENSMUSG00000059248.14	novel	647	4	NA	NA	801	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	284.796200875394	1	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAACTTTTTTTCTGGAG	64	False	NA	NA	False	NA	NA	NA	117199780	117253133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117199969_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248_117252142_117252236_117252282_117252337
16370	chr11	-	2326	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-47	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	1126.59438104771	1	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9218	False	NA	NA	False	NA	NA	NA	106679756	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679195_106679634
16372	chr15	-	1775	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-11	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1846.06830859532	2	19	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCACTTATTCAGAG	NA	False	NA	NA	False	NA	NA	NA	31601897	31590958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595802_31595990_31597556_31597722_31598145_31598207_31601746
16373	chr11	+	1522	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	68	36	68	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTGGACAGTCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653687	120655209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653700_120655200
16375	chr6	-	2825	10	NIC	ENSMUSG00000040234.17	novel	3241	12	NA	NA	44	-1	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	281.457230924178	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAATGTCCTCCTTATT	NA	False	NA	NA	False	NA	NA	NA	146535952	146503850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146527593_146527749_146535883
16377	chr5	-	2988	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	442	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTAGTTTCTGTTCCTAA	NA	False	NA	NA	False	NA	NA	NA	5609501	5587455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
16378	chr5	-	3075	19	NNC	ENSMUSG00000003623.5	novel	2996	18	NA	NA	-138	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	66.6134278162601	490	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTTACGGTTGAAAACA	NA	False	NA	NA	False	NA	NA	NA	9047180	9016040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9031808_9032040_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
16379	chr11	+	1943	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	6	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655846_75655951
16380	chr12	+	3754	7	NNC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	3	2	intron_retention	FALSE	canonical	1	4	junction_1	91.063012371776	4	63	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATCTAGTTTGAGTTACT	NA	False	NA	NA	False	NA	NA	NA	28699625	28709590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_28699778_28702023_28702140_28703061_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
16381	chr6	+	1071	5	ISM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	2481	25	1333	-25	3prime_fragment	FALSE	canonical	3	152	junction_4	1587.21271022507	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGAATAAAGGAGAATGGA	NA	False	NA	NA	False	NA	NA	NA	124910919	124913082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
16382	chr14	-	2914	15	ISM	ENSMUSG00000037544.15	ENSMUST00000180299.8	4067	17	4430	756	-2081	364	3prime_fragment	FALSE	canonical	3	355	junction_10	53.9684809752462	1	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTATTTTTCAGTACTG	NA	False	NA	NA	False	NA	NA	NA	47651204	47626930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102
16383	chr5	+	1749	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1198.41928201703	10	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	756	False	NA	NA	False	NA	NA	NA	77099623	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77109040_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
16384	chr1	+	3032	13	NNC	ENSMUSG00000026288.15	novel	577	3	NA	NA	-9516	-37	intron_retention	FALSE	canonical	0	0	junction_1	144.107670973246	1	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAGGGTGAAGATATAAATA	861	False	NA	NA	False	NA	NA	NA	87627546	87647379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87628469_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
16385	chr4	-	2704	14	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	-10	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	341.112693728165	2	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCAAACTTGTTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	122779667	122752859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766218_122776384_122776574_122779625
16386	chr2	+	3590	3	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-1	-298	intron_retention	FALSE	canonical	3	58	junction_1	259.5	336	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTCAGCCTACACAGAG	NA	False	NA	NA	False	NA	NA	NA	104389527	104401476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389595_104390068_104390321_104398205
16387	chr11	+	1688	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-9	-275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4268.40042170366	4	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAAATATATCATGCCT	3026	False	NA	NA	False	NA	NA	NA	75623729	75656396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650242_75655534
16388	chr6	-	2038	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1762.30407544243	19	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9320	False	NA	NA	False	NA	NA	NA	128415589	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407844_128409384_128409625_128410068_128410137_128410498_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
16389	SIRV7	+	1710	2	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	225	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACCGAGTTCGAAACT	NA	False	NA	NA	False	NA	NA	NA	1005	3033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_2679_2996
16390	chr7	-	3164	11	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	66	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	78.9756924629344	2	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAATATGACTTTATT	9670	False	NA	NA	False	NA	NA	NA	3218865	3204505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208263_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
16391	chr5	+	3363	19	FSM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	-1	9	-1	0	multi-exon	FALSE	canonical	3	86	junction_10	33.5248203611431	205	6	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTTGATAATATTCTTA	NA	False	NA	NA	False	NA	NA	NA	76677156	76718132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
16392	chr13	+	4821	20	NNC	ENSMUSG00000038518.16	novel	4135	19	NA	NA	-17	258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	310.997813318995	1	205	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTTTTCACAAGCTGT	9867	False	NA	NA	False	NA	NA	NA	44884232	45074729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_44884365_44885188_44885393_44976855_44976992_45001755_45001902_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066757_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275_45073480_45073953
16393	chr12	+	2369	17	NNC	ENSMUSG00000021177.17	novel	2019	15	NA	NA	-4	0	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_1	166.951153035851	27	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	NA	False	NA	NA	NA	99852738	99921478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_99852980_99854103_99854212_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
16395	chr5	-	4145	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	0	37	0	-37	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	1	198	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTTTGGACTAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	92231578	92200059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
16396	chr19	-	3520	2	FSM	ENSMUSG00000006456.11	ENSMUST00000113793.4	3508	2	-18	6	-18	-6	multi-exon	FALSE	canonical	3	401	junction_1	0	21	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAACCTGGTTGTCATTG	7796	False	NA	NA	False	NA	NA	NA	4861631	4850955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4854044_4861199
16397	chr3	+	3540	3	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-4	-52	intron_retention	FALSE	canonical	3	503	junction_2	0.5	1	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACATCTTCATATTTTTTC	7040	False	NA	NA	False	NA	NA	NA	108291162	108295443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291748_108292285_108294712_108294914
16398	chr15	-	1828	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1836.00706970316	4	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAACTGCTTCCACTTATT	NA	False	NA	NA	False	NA	NA	NA	31601950	31590963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593019_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
16399	chr11	-	3131	7	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	-18	11892	-18	-9550	5prime_fragment	FALSE	canonical	3	46	junction_1	16.3647656737136	19	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTAAGTATAAAGGCAAC	NA	False	NA	NA	False	NA	NA	NA	103303531	103266992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650_103294737_103303418
16400	chr18	+	2298	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26796	1	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_12	435.276829577853	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTTCTAATTAAAGATGT	6289	False	NA	NA	False	NA	NA	NA	77126107	77240814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232781_77232839_77237756_77237795_77240310
16401	chr14	+	2439	5	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-369	0	intron_retention	FALSE	canonical	0	0	junction_1	542.368590075052	9	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCTTAAACATACA	NA	False	NA	NA	False	NA	NA	NA	8352843	8357589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8352939_8353123_8353380_8353506_8353616_8355471_8357238_8357376
16404	chr16	+	5038	7	NIC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	143	junction_3	22.0636704914562	11	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGATTGTGGCCGAATC	NA	False	NA	NA	False	NA	NA	NA	8455585	8475393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_8455693_8460601_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
16406	chr5	+	4140	5	NNC	ENSMUSG00000029464.11	novel	1592	8	NA	NA	-3	0	intron_retention	FALSE	non_canonical	0	0	junction_3	217.635446331704	4	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8112	False	NA	NA	False	NA	NA	NA	122510586	122520965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122510720_122511973_122512083_122516529_122517154_122517607_122520240_122520323
16407	chr3	+	2803	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	1	-9	1	8	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	96465276	96469182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
16408	chr12	+	3061	14	Antisense	novelGene_ENSMUSG00000047534.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCCGAGAGCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	65179515	65219380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_65180402_65180579_65180631_65183521_65183626_65185420_65185571_65187506_65187663_65189994_65190167_65195495_65195731_65196078_65196325_65199461_65199604_65200578_65200667_65201491_65201624_65203765_65203839_65205167_65205636_65219222
16410	chr18	-	2688	14	FSM	ENSMUSG00000044252.19	ENSMUST00000117361.8	2687	14	-2	1	-2	-1	multi-exon	FALSE	canonical	3	16	junction_13	98.4808875218973	606	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGAATGCTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	12996439	12888385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996199
16411	chr10	-	2035	11	NNC	ENSMUSG00000036112.16	novel	1984	11	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	671.364290084005	2	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725646	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715579_93715930_93716001_93722855_93722964_93725399
16412	chr2	+	4518	14	NIC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	34	1	intron_retention	FALSE	canonical	3	224	junction_9	37.9362592161327	1	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGATTTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	128942980	128968515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
16413	chr15	-	2832	5	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	972.418891219211	10	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	38300948	38294656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38296040_38296249_38296409_38296858_38297772_38297865_38298097_38300802
16415	chr10	-	2775	12	NNC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	-6	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.325597035126	3	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGTGAAAGAGATTTGT	NA	False	NA	NA	False	NA	NA	NA	117545989	117524807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117526179_117526323_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850
16416	chr14	-	3995	13	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6145	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	53.9554214143491	183	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACTTGGCTGTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	47814251	47778353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47812373_47812595_47813988_47814069_47814201
16418	chr10	+	3457	3	FSM	ENSMUSG00000060935.7	ENSMUST00000095383.6	3616	3	157	2	41	-2	multi-exon	FALSE	canonical	3	175	junction_1	7	181	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATGGAATGTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	84938647	84953447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_84938862_84946662_84946730_84950271
16419	chr8	-	3651	3	NIC	ENSMUSG00000071302.11	novel	343	4	NA	NA	-3	-309	intron_retention	FALSE	canonical	1	1	junction_2	33.5	69	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGCTGGTTATTTGATC	NA	False	NA	NA	False	NA	NA	NA	129960890	129943143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_129946633_129948024_129948086_129960789
16421	chr17	-	2452	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	-52	3	-18	1	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	793	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGTCGTGTCGACCTT	1893	False	NA	NA	False	NA	NA	NA	31856191	31831617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
16422	chr1	-	2343	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	-64	4	-43	-4	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	102	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGTGTTTATTATGTG	NA	False	NA	NA	False	NA	NA	NA	65225702	65197780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
16423	chr6	-	1943	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	98	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.44491542262	25	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8583	False	NA	NA	False	NA	NA	NA	145021812	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945064_144945583_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
16424	chr8	-	1959	15	NNC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	-26	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	415.805046547891	291	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATGCAGTGTTACTTT	NA	False	NA	NA	False	NA	NA	NA	112737981	112720076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112729957_112730029_112730073_112732263_112732421_112737841
16426	chr16	-	3388	29	Antisense	novelGene_ENSMUSG00000038084.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAAGGGCATAGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	29454395	29398250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_29398401_29404848_29405154_29405787_29405884_29407068_29407176_29408496_29408568_29416401_29416513_29421027_29421088_29424333_29424433_29426498_29426587_29427169_29427283_29429483_29429567_29429671_29429745_29430212_29430282_29430363_29430471_29430726_29430855_29432780_29432853_29432941_29433017_29433866_29433981_29434722_29434789_29435431_29435507_29436936_29437104_29439196_29439351_29439587_29439698_29440282_29440361_29444279_29444422_29447513_29447627_29448435_29448534_29448899_29449014_29454045
16427	chr14	+	547	1	Intergenic	novelGene_572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTGGACCAGAAACGAT	NA	False	NA	NA	False	NA	NA	NA	52319591	52320138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_52319600_52320100
16428	chrX	-	2994	24	NNC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	326.580362942044	3	64	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATTTGACTTCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	37665072	37622445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37622606_37625998_37626152_37627830_37627911_37627964_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
16429	chr16	+	3010	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	36	-1	36	1	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	1	75	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGAAAACATTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	48251635	48451264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
16430	chr10	-	2723	14	NNC	ENSMUSG00000020130.10	novel	3752	17	NA	NA	10310	-595	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	128.195394502289	2	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTATTTTAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	115076848	115034371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065111_115076753
16431	chr17	+	2410	6	Intergenic	novelGene_41	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_5	76.7557163994969	4	57	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCCCAAGTATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	17399522	17426649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17399977_17400131_17422956_17423084_17423325_17423387_17424679_17425088_17425179
16433	chr18	+	4015	21	NIC	ENSMUSG00000024260.15	novel	4015	21	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	45.7417752169721	533	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGATGAGCAGTTTGCCT	6793	False	NA	NA	False	NA	NA	NA	31767411	31856112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799415_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
16434	chr3	+	1918	12	ISM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	11758	0	-5701	0	3prime_fragment	FALSE	canonical	3	611	junction_4	70.4470963804027	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	58444999	58464922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
16436	chr2	-	3418	21	NNC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-9	0	intron_retention	FALSE	canonical	3	15	junction_4	63.2971365861047	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCAGTACTGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	11782370	11747383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753875_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
16437	chr4	-	2692	16	NNC	ENSMUSG00000037188.8	novel	2789	16	NA	NA	4252	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	66.9877600760019	14	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCGGTTTTCATGCGCT	4164	False	NA	NA	False	NA	NA	NA	135296689	135269200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279191_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135296558
16438	chr9	-	1723	11	NIC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-1	2	combination_of_known_splicesites	FALSE	canonical	3	9	junction_9	2139.65447911573	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996798	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89992178_89992226_89996588
16439	chrX	+	2853	22	NNC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	50	-101	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	242.08497224497	4	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGCCGCAGCCACAGC	NA	False	NA	NA	False	NA	NA	NA	143118914	143152666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136548_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
16440	chr3	+	2772	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	37	-4	37	4	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	976	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGTTTCAGAGTAATCACTA	1911	False	NA	NA	False	NA	NA	NA	95136079	95143724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
16443	chrX	+	4234	22	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12838	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	123.407809835296	1	142	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAGCTAAGCCTTGGAT	7981	False	NA	NA	False	NA	NA	NA	159932907	160041203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933107_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_160007456_160007541_160008877_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
16444	chr13	+	4372	27	NNC	ENSMUSG00000042426.7	novel	4682	27	NA	NA	80	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	63.074730262072	139	39	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTCCATCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	113064261	113105966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_113064508_113066160_113066239_113067415_113067490_113069040_113069171_113069617_113069764_113072002_113072132_113076906_113077034_113078206_113078366_113081027_113081194_113081603_113081728_113083296_113083909_113084745_113084890_113089336_113089514_113090207_113090349_113091681_113091827_113091933_113092052_113092915_113093001_113095446_113095536_113096652_113096782_113096856_113096933_113097594_113097820_113099267_113099405_113099796_113099891_113100980_113101275_113101748_113101881_113103069_113103167_113105668
16445	chr1	+	2976	6	FSM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	-13	1916	6	-1916	multi-exon	FALSE	canonical	3	202	junction_5	16.7164589551735	326	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTTTTACTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	190795214	190816755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367
16448	chr16	+	4692	1	ISM	ENSMUSG00000050240.17	ENSMUST00000090190.14	6354	3	25163	4	25071	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	221	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTGGAGTCTGTGACT	6255	False	NA	NA	False	NA	NA	NA	17076598	17081290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_17076600_17081300
16449	chr11	+	3363	20	FSM	ENSMUSG00000025579.15	ENSMUST00000026666.13	3363	20	3	-3	1	3	multi-exon	FALSE	canonical	3	38	junction_1	100.783495768854	6	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCACGTCACCTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	119158854	119176283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
16450	chr17	-	2971	18	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-21	-1035	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	316.178051979629	2	81	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTACTGTGCTTCAAC	8716	False	NA	NA	False	NA	NA	NA	24470342	24442206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443001_24443074_24443321_24443887_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459758_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
16452	chr13	-	2339	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	-83	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	642.234353087496	1	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGTTCTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	74498358	74470933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475320_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487831_74491455_74491618_74492969_74493057_74498264
16453	chr11	+	2803	18	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-39	-5	intron_retention	FALSE	canonical	3	30	junction_1	241.843296228768	5	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGACCAATTGTTAATC	NA	False	NA	NA	False	NA	NA	NA	115455311	115474727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455429_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
16455	chr14	+	2131	2	FSM	ENSMUSG00000022010.20	ENSMUST00000133224.2	786	2	-584	-761	-16	0	multi-exon	FALSE	canonical	3	2335	junction_1	0	28	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6575	False	NA	NA	False	NA	NA	NA	76741953	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742738_76743856
16456	chr18	+	3007	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	28	5	-7	2	multi-exon	FALSE	canonical	3	120	junction_3	53.7248487666555	427	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTAGACACGGTGTCC	954	False	NA	NA	False	NA	NA	NA	38429715	38450897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
16457	chr17	-	2560	21	NIC	ENSMUSG00000040688.17	novel	5226	22	NA	NA	9	-199	intron_retention	FALSE	canonical	3	500	junction_13	39.931034296647	123	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAACTTGGTTTCTCATG	NA	False	NA	NA	False	NA	NA	NA	24926596	24919630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
16458	chr4	+	3051	3	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14295	4031	multi-exon	FALSE	canonical	2	4	junction_2	27.5	30	30	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGCTGGATCCATTCCAA	NA	False	NA	NA	False	NA	NA	NA	145159014	145181489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036_145177478_145180016
16459	chr5	+	2531	15	NNC	ENSMUSG00000037313.17	novel	2669	15	NA	NA	-53	194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	393.834705822384	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTGCTGTTGGAATCA	NA	False	NA	NA	False	NA	NA	NA	33815844	33829739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824413_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069_33829130_33829325
16460	chr8	+	2589	19	Intergenic	novelGene_1567	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	416	14	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTCCAGGTACAGACGA	318	False	NA	NA	False	NA	NA	NA	3660086	3671284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_3660222_3660311_3660420_3660543_3660675_3660846_3661021_3661114_3661235_3661391_3661585_3661671_3661837_3662964_3663079_3663160_3663293_3663368_3663502_3663591_3663710_3663798_3663951_3664244_3664334_3665995_3666159_3666249_3666385_3668054_3668253_3668542_3668672_3668950_3669093_3671226
16461	chr15	-	2407	4	NNC	ENSMUSG00000041815.15	novel	837	2	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	313.955410846827	18	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCTAACTTTGAGCTATA	NA	False	NA	NA	False	NA	NA	NA	83033530	83010184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012119_83022346_83022724_83033395
16462	chr19	-	1803	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-62	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1162.82800946307	31	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCATTGCCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	15902356	15882494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883425_15886729_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
16463	chr11	-	2892	10	Antisense	novelGene_ENSMUSG00000025156.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCCGCGGCGACGTTCGC	NA	False	NA	89	True	NA	NA	NA	120679921	120675124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120675162_120675939_120677519_120677600_120677674_120677832_120677890_120678199_120678290_120678520_120678615_120678698_120678806_120678885_120678969_120679069_120679206_120679285
16464	chr5	+	2044	12	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	1654	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	776.848698799481	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTTTGTTCACTGTGAT	NA	False	NA	NA	False	NA	NA	NA	45652521	45670015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45652624_45654261_45654317_45654670_45654774_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
16465	chr1	+	2766	14	NNC	ENSMUSG00000026554.16	novel	2754	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_10	158.523064978499	38	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	171975688	172023033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015085_172016505_172016637_172020084_172020205_172021351_172021469_172022122
16467	chr3	+	1978	7	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	1	0	intron_retention	FALSE	canonical	0	0	junction_1	1881.32976021395	46	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTGGTTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	121220146	121251856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243667_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
16468	chrX	-	3043	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	433.097115103658	1	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231306	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101600_23102261_23113599_23113655_23113701_23113797_23114346_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
16469	chr18	-	3390	19	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGTGCCGGAGCAGGAGA	NA	False	NA	NA	False	NA	NA	NA	32996079	32970367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970624_32974085_32974211_32974986_32975066_32976812_32976951_32977524_32978696_32979879_32980014_32980192_32980375_32980664_32980763_32981348_32981416_32982129_32982210_32983436_32983589_32985033_32985145_32985533_32985701_32985913_32986025_32987831_32987906_32992266_32992380_32994078_32994177_32994558_32994704_32995990
16470	chr4	-	3297	8	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	183.650622161778	2	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCCTAATGAAGTTTTG	NA	False	NA	NA	False	NA	NA	NA	126954931	126941385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943696_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954826
16471	chr11	-	1466	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTTTGAGCCCGACTCG	5986	False	NA	NA	False	NA	NA	NA	120655205	120653739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120653700_120655200
16472	chr15	+	3077	15	Intergenic	novelGene_3322	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	20	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGGAAAGGGCCGTCAG	4472	False	NA	NA	False	NA	NA	NA	79170520	79212361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_79171098_79171311_79171387_79171819_79171983_79173329_79173492_79173784_79173918_79181499_79181648_79183229_79183396_79186818_79186900_79189902_79190014_79191514_79191609_79192869_79193057_79195993_79196180_79197149_79197363_79201959_79202210_79211830
16473	chr14	+	3570	6	NNC	ENSMUSG00000021890.7	novel	4918	6	NA	NA	-17222	-5454	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	310	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTTCCGTTGGGGAGAC	NA	False	NA	NA	False	NA	NA	NA	31199133	31216978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31201768_31204747_31204888_31209525_31209699_31214278_31214414_31215553_31215922_31216858
16474	chr8	-	3863	23	ISM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	-11	3718	-11	1250	5prime_fragment	FALSE	canonical	3	88	junction_1	74.1921923450081	9	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCCAATTGTCCTGTAG	NA	False	NA	NA	False	NA	NA	NA	73175315	73098560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
16475	chr17	+	3609	8	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCGTTCAACGTGCTGTCT	7837	False	NA	NA	False	NA	NA	NA	32529570	32540129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32529645_32529925_32530068_32531258_32532239_32533086_32533118_32534414_32534463_32534628_32536849_32537740_32537786_32540060
16476	chr8	+	3019	22	NNC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	141	-696	intron_retention	FALSE	non_canonical	0	0	junction_6	73.6600945139872	1	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGTCACCCAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	85811057	85824215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817755_85817834_85817901_85817981_85818139_85818251_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
16477	chrX	+	4039	25	NNC	ENSMUSG00000025862.15	novel	5825	33	NA	NA	-23	-705	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	59.7036082103363	4	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTTTAAACTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	41239554	41365347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312187_41322747_41322856_41323522_41323630_41336851_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
16478	chr16	+	3099	19	NNC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	31	88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	44.8441746495573	269	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAACGTGATACTTTTTT	6432	False	NA	NA	False	NA	NA	NA	44167807	44207594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_44167870_44168370_44168433_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
16479	chr13	-	2054	10	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-2	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1167.55775493597	2	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAAAGCTTTCACAATTC	NA	False	NA	NA	False	NA	NA	NA	100922912	100915258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916062_100916229_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
16480	chr3	+	3372	9	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	31	1	intron_retention	FALSE	canonical	3	130	junction_1	27.6936364531637	5	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTTGCGTTCCTACCTT	NA	False	NA	NA	False	NA	NA	NA	95190285	95203473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
16481	chr9	+	2186	5	NIC	ENSMUSG00000032518.7	novel	1599	6	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	2998	junction_1	1134.17481015935	109	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTTATGGTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	119956853	119960621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
16482	chr11	-	4474	23	NNC	ENSMUSG00000020273.14	novel	3747	22	NA	NA	0	2468	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	36.478483412364	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGTAATCTAATAAACGT	1269	False	NA	NA	False	NA	NA	NA	23845253	23810177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_23812196_23813936_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
16486	chr17	-	2182	17	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_3	733.658275250644	3	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5758	False	NA	NA	False	NA	NA	NA	33904375	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33868741_33868811_33869067_33869285_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
16487	chr3	-	4059	2	FSM	ENSMUSG00000027828.13	ENSMUST00000139785.2	745	2	-1291	-2023	-1291	-2	multi-exon	FALSE	canonical	3	610	junction_1	0	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTTTTCTGTAATT	3819	False	NA	NA	False	NA	NA	NA	65292093	65287077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412
16488	chr11	-	3579	10	NIC	ENSMUSG00000020472.15	novel	4064	10	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	43.6750062717741	220	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	NA	False	NA	NA	NA	59397032	59376345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394590_59394973_59395081_59396653_59396789_59396989
16489	chr3	-	2351	17	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	109.901358470903	6	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGATATTTTTCATATGG	NA	False	NA	NA	False	NA	NA	NA	95763197	95737926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754767_95754857_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
16491	chrX	+	2755	9	NNC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	230.063578169166	32	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTTGGGCTTCGTGTC	NA	False	NA	NA	False	NA	NA	NA	73340760	73348292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344971_73345541_73345628_73345967_73346207_73346720_73346876_73346963_73347193_73347402
16494	chr14	-	5938	7	FSM	ENSMUSG00000021978.10	ENSMUST00000022550.8	5977	7	21	18	20	-15	multi-exon	FALSE	canonical	3	124	junction_6	16.5797734872612	71	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGACTTTAACTCATGCAG	NA	False	NA	NA	False	NA	NA	NA	65335534	65289526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65317828_65317925_65335445
16495	chr11	-	2281	12	NNC	ENSMUSG00000018593.14	novel	1304	12	NA	NA	56	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	271.866094895482	29	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTAGAAACGGCTGTCCT	629	False	NA	NA	False	NA	NA	NA	55313953	55285339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55312098_55312192_55313826
16496	chr3	+	622	7	FSM	ENSMUSG00000001016.13	ENSMUST00000198325.5	3164	7	18	2524	18	587	multi-exon	FALSE	canonical	3	1316	junction_1	43.5982288121382	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTCCGGTATTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	90383481	90390245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083
16497	chr8	-	2862	10	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	3	-2	intron_retention	FALSE	canonical	3	191	junction_7	17.3767263109008	38	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGTTAGCGATATTGT	NA	False	NA	NA	False	NA	NA	NA	106578621	106571306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106576154_106576257_106576346_106576464_106576556_106578502
16498	chr19	+	2996	13	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	499.657604987878	1	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	848	False	NA	NA	False	NA	NA	NA	6413965	6427226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424887_6425749_6425807_6425903
16500	chr10	+	2691	3	NIC	ENSMUSG00000006728.13	novel	1182	6	NA	NA	28	249	intron_retention	FALSE	canonical	3	5326	junction_2	133	134	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGATCCCATTACAGATGG	NA	False	NA	NA	False	NA	NA	NA	126899430	126902349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126900323_126900453_126901873_126901969
16501	chr3	+	3710	7	NIC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	36	-23	intron_retention	FALSE	canonical	3	1030	junction_1	92.5466849157164	38	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAGTGCCTTTATATA	NA	False	NA	NA	False	NA	NA	NA	97066128	97083811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_97066682_97073158_97073288_97073389_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
16502	chr13	-	5178	4	FSM	ENSMUSG00000021510.12	ENSMUST00000012314.10	9455	4	3	4274	3	-10	multi-exon	FALSE	canonical	3	9	junction_2	10.6144555520604	66	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGTAAACAAGCCCAA	NA	False	NA	NA	False	NA	NA	NA	67785907	67765155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67769969_67771586_67771683_67772153_67772281_67785765
16503	chr3	-	2414	18	NNC	ENSMUSG00000042520.17	novel	3494	26	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	299.565764163436	30	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTTCTTTCCGTGCA	3542	False	NA	NA	False	NA	NA	NA	89959787	89913523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928682_89946202_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
16504	chr8	+	3672	8	NIC	ENSMUSG00000019428.17	novel	1799	9	NA	NA	20	-8	intron_retention	FALSE	canonical	3	81	junction_1	453.143757880568	27	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACACCCTACTGCTTTCTA	NA	False	NA	NA	False	NA	NA	NA	70980678	70987968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70981917_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70985400_70986766_70986845_70987132_70987265_70987516
16505	chr6	-	3128	14	ISM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	16743	6	-429	-6	intron_retention	FALSE	canonical	3	496	junction_10	62.5108747935559	3	85	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	NA	False	NA	NA	False	NA	NA	NA	125151921	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742
16507	chr12	-	2286	16	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-4962	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	338.556701307181	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAATTCTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	87524006	87496685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497158_87497291_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017_87519029_87523796
16509	chr3	-	2732	7	Fusion	ENSMUSG00000038975.15_ENSMUSG00000065463.3	novel	1169	9	NA	NA	4	0	intron_retention	FALSE	canonical	3	607	junction_3	185.029727341311	2301	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6158	False	NA	NA	False	NA	NA	NA	153618588	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615236_153615700_153615799_153615897_153616526_153617561
16510	chr5	-	4093	23	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	8059	-3	intron_retention	FALSE	canonical	0	0	junction_20	81.7376876769637	1	66	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCAGTCTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	108764898	108717288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754845_108757256_108757347_108761378_108761505_108764774
16511	chr14	+	2233	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	-11	12	-11	-12	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	6992	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAGGACTAACCATAAAT	NA	False	NA	NA	False	NA	NA	NA	45567233	45587150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
16514	chr15	+	2492	2	Antisense	novelGene_ENSMUSG00000023022.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTTGTGCCCAAAGCCC	5378	False	NA	NA	False	NA	NA	NA	99676497	99679064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99677840_99677914
16515	chr3	+	3079	11	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	10	-2	intron_retention	FALSE	canonical	3	123	junction_1	135.887306250437	12	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTCGGCCTCTCAACTCC	NA	False	NA	NA	False	NA	NA	NA	89325887	89337320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334754_89335623
16517	chr16	-	1950	3	FSM	ENSMUSG00000022538.21	ENSMUST00000129004.2	628	3	-44	-1278	6	1278	multi-exon	FALSE	canonical	3	469	junction_1	59.5	4	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTCATTGAGAGAAGGTGA	NA	False	NA	NA	False	NA	NA	NA	30406401	30399792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_30401470_30404371_30404499_30406255
16518	chr5	+	2599	16	NNC	ENSMUSG00000056310.15	novel	3044	16	NA	NA	5	-406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	100.646046453235	532	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	4933	False	NA	NA	False	NA	NA	NA	130285880	130369998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295924_130296735_130296922_130298029_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
16520	chr15	+	1245	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	323	157	-16	-157	multi-exon	FALSE	canonical	3	1292	junction_2	43	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAAGGAGATCCAGTATC	4468	False	NA	NA	False	NA	NA	NA	80139707	80141585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
16521	chr7	+	3060	23	Antisense	novelGene_ENSMUSG00000032637.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	13	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCGCCCACCCCGTCCC	NA	False	NA	NA	False	NA	NA	NA	126091232	126101580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126091388_126091983_126092176_126092337_126092546_126092720_126092847_126092932_126093063_126093310_126093504_126093593_126093664_126093747_126093898_126094372_126094444_126094532_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096539_126096666_126096840_126097275_126097477_126098320_126098414_126099300_126099428_126099896_126100046_126100274_126100346_126100426_126100482_126100590_126100630_126101466
16523	chr11	-	2324	9	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-18	-6	intron_retention	FALSE	canonical	3	2432	junction_8	290.917272390279	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACTTGCTGTTTTCTT	9820	False	NA	NA	False	NA	NA	NA	106890213	106879460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
16525	chr6	-	3095	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	22	355	22	-355	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	3004	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCTTTTAGGTAAAATTT	NA	False	NA	NA	False	NA	NA	NA	91450506	91439508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_91442296_91444664_91444764_91450297
16526	chr1	+	3258	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	6	4	6	-4	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	343	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTGATTGTTCTATTG	NA	False	NA	NA	False	NA	NA	NA	180978501	180996555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
16527	chr7	+	2320	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	493	42	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAACCAGACTTGCTG	276	False	NA	NA	False	NA	NA	NA	44465712	44480223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478457_44478644
16528	chr7	-	2214	20	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	329.880974085672	4	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153775	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116749_143122720_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
16529	chr14	-	2435	15	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	55	57359	55	6687	5prime_fragment	FALSE	canonical	3	255	junction_9	36.077651514137	166	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGGATTGCACGGAGGC	NA	False	NA	NA	False	NA	NA	NA	14651761	14575543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
16530	chr19	-	2581	8	NIC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	12	intron_retention	FALSE	canonical	3	2610	junction_7	209.056871473301	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATGAGATTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	8691236	8684938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8685459_8685557_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
16531	chr11	+	2452	12	NNC	ENSMUSG00000017499.16	novel	4614	12	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	194.129674646903	2	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTGTCTGGGCTGCATTT	18	False	NA	NA	False	NA	NA	NA	98798627	98812718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810115_98811498_98811640_98811941
16532	chr9	-	3898	23	NNC	ENSMUSG00000032480.18	novel	3968	23	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	205.781301907817	1	111	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGCTGTCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	109946465	109913390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914906_109915017_109915100_109915187_109915395_109915593_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944103_109944224_109944558_109944651_109946425
16533	chr9	+	4169	17	NIC	ENSMUSG00000032512.8	novel	3845	19	NA	NA	-3	-557	intron_retention	FALSE	canonical	3	235	junction_16	23.6061432682258	3	73	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATTGTGGTTCATG	NA	False	NA	NA	False	NA	NA	NA	119723957	119754747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119749711_119751683_119751761_119753143
16534	chr1	+	3090	9	NNC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	33	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	151.790151195656	14	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATTTATCACTGTGAT	NA	False	NA	NA	False	NA	NA	NA	191553588	191565151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248_191564132_191564224
16535	chr8	+	4093	13	NIC	ENSMUSG00000039842.16	novel	4662	14	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	45.9480382848084	9	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCAGCAAAGAGAAGCAATA	NA	False	NA	NA	False	NA	NA	NA	18645591	18853196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
16536	chr11	-	3374	10	NIC	ENSMUSG00000018669.15	novel	2201	13	NA	NA	2	0	intron_retention	FALSE	canonical	3	18	junction_8	354.622316915223	3	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	96807253	96798641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96804309_96804490_96804623_96806876_96807023_96807209
16538	chr1	-	3070	7	NNC	ENSMUSG00000026374.15	novel	7063	6	NA	NA	33	1133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	478.855493163996	1692	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTGTGCTGCTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	118238933	118226246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_118228318_118228358_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
16539	chr6	+	2895	11	NIC	ENSMUSG00000033706.14	novel	2486	13	NA	NA	0	-8	intron_retention	FALSE	canonical	3	423	junction_9	60.2897171995358	752	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCCTTTGCAACAATGCC	NA	False	NA	NA	False	NA	NA	NA	85408970	85423409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
16540	chr4	+	2313	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	184	412	42	-412	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	37	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCGCCACTGTCAAGTTC	897	False	NA	NA	False	NA	NA	NA	129083736	129112988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
16542	chr5	-	3559	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	62	936	51	-936	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	3	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAAGGCAGCTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	74229030	74160322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
16543	chr2	+	2839	29	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	43	-2996	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	286.018534435823	1	77	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATCACCGAGGAGGGAGAC	NA	False	NA	NA	False	NA	NA	NA	146854958	146916924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878585_146878716_146880088_146880208_146882735_146882872_146883917_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804
16545	chr2	-	3698	8	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	0	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	75.5907347740017	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGACTGGTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	29677672	29664697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29666232_29666386_29667969_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
16546	chr9	-	1766	5	NIC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_3	2037.2819361836	12	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775162	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110769888_110771396_110771507_110771597_110771713_110773258_110773312_110774891
16547	chr1	+	2503	12	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	3	-251	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	263.469288752413	3	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAACGCTGTGTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	167177562	167195850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177818_167177865_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192223_167193377_167193457_167194973
16548	chr16	+	2884	14	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	11	740	combination_of_known_splicesites	FALSE	canonical	1	7	junction_9	79.6859219300759	6	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTTTTCTAACTTGTG	NA	False	NA	NA	False	NA	NA	NA	36648780	36693823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
16551	chr7	-	2685	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-1	0	intron_retention	FALSE	canonical	3	689	junction_7	49.0761879349061	8	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7986	False	NA	NA	False	NA	NA	NA	126641582	126626903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126627163_126627241_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
16552	chr5	+	1944	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-144	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1504.08011344287	1	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATATTCTCGCTGTGTGG	612	False	NA	NA	False	NA	NA	NA	77099479	77115350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099516_77099615_77099687_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114142_77114494
16553	chr2	+	1837	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	46	-707	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1169.66059595176	60	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	121244409	121268461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260032_121262171_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
16554	chr1	+	4561	19	Antisense	novelGene_ENSMUSG00000041303.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	158	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACCTTCCCGGCCTGCG	NA	False	NA	NA	False	NA	NA	NA	54435180	54478168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_54436970_54437016_54437169_54438292_54438441_54442677_54442802_54444142_54444329_54444994_54445234_54455042_54455177_54455878_54455979_54456812_54457021_54458541_54458714_54459554_54459663_54462661_54462730_54463164_54463315_54466557_54466725_54467920_54468113_54469657_54469781_54473207_54473397_54476989_54477105_54477971
16555	chr3	-	3889	16	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_6	192.395356839331	4	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGCTGTGCCTTCATCT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653340_95653483_95653846_95654010_95655353_95655453_95655798_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
16556	chrX	+	3177	21	NNC	ENSMUSG00000031262.13	novel	3227	23	NA	NA	-13	-2	intron_retention	FALSE	canonical	0	0	junction_16	62.7167441756984	1	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGGGTATTTCCGAATTT	NA	False	NA	NA	False	NA	NA	NA	133208934	133263383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133208978_133209314_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133244020_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
16557	chr3	-	2753	6	NNC	ENSMUSG00000027828.13	novel	2957	5	NA	NA	-32	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	246.814424213821	3	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTGTTTTTCTGTAAT	2754	False	NA	NA	False	NA	NA	NA	65300006	65287078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_65288411_65288573_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
16558	chr12	+	2891	23	NNC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	294.714096643392	11	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	2064	False	NA	NA	False	NA	NA	NA	109570252	109628143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109570270_109570371_109570501_109572647_109572778_109573847_109573931_109583607_109583784_109586746_109586835_109591534_109591610_109593481_109593588_109604287_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611695_109611766_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
16560	chr7	-	1939	9	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-75	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	695.309238756397	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8790	False	NA	NA	False	NA	NA	NA	141941669	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930673_141930843_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
16561	chr1	+	1807	6	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-37	-7	intron_retention	FALSE	canonical	3	1601	junction_4	231.048393199347	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59743830	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
16562	chr15	-	3121	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	53.1124617556935	356	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	79212421	79170427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
16563	chr2	+	3678	18	NNC	ENSMUSG00000026843.16	novel	3648	18	NA	NA	7	0	intron_retention	FALSE	non_canonical	0	0	junction_2	303.741159610486	1	113	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	500	False	NA	NA	False	NA	NA	NA	31462669	31507531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473312_31484868_31484905_31485261_31485334_31486605_31486657_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494724_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502892_31503022_31503120_31504722_31504795_31505509_31506049_31506147
16565	chr19	-	3462	6	FSM	ENSMUSG00000024764.11	ENSMUST00000237834.2	1569	6	-137	-1756	-8	0	multi-exon	FALSE	canonical	3	441	junction_1	33.2060235499525	651	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	NA	False	NA	NA	NA	7218556	7203037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7205457_7205716_7205795_7207086_7207649_7211468_7211522_7212427_7212524_7218302
16566	chr9	-	5049	25	ISM	ENSMUSG00000032570.18	ENSMUST00000038118.15	4876	28	25565	1043	822	522	3prime_fragment	FALSE	canonical	3	363	junction_24	34.9541117832445	10	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAAGTGTAAATGGTTGT	NA	False	NA	NA	False	NA	NA	NA	105346767	105289599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_105290389_105291832_105291975_105295248_105295345_105295742_105295891_105297380_105297498_105298772_105298842_105300141_105300309_105301368_105301420_105308693_105308792_105309852_105310024_105312250_105312408_105316539_105316645_105319964_105320055_105320144_105320241_105322416_105322515_105323250_105323376_105326020_105326088_105329002_105329079_105329973_105330043_105330732_105330886_105336858_105336968_105338215_105338278_105341824_105341861_105343781_105343872_105344899
16568	chr7	+	2776	3	FSM	ENSMUSG00000037706.18	ENSMUST00000132303.2	943	3	-1508	-325	19	-4	multi-exon	FALSE	canonical	3	6204	junction_1	94.5	3	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTGCCAGACCTCTTC	NA	False	NA	NA	False	NA	NA	NA	142618429	142621667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142620500_142620883_142620971_142621048
16569	chr7	-	3130	13	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	-12	0	intron_retention	FALSE	canonical	3	112	junction_7	38.8489775355228	23	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	False	NA	NA	False	NA	NA	NA	30364397	30353135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30353728_30356373_30356504_30356586_30357344_30357927_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
16570	chrX	-	2432	12	NIC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	16	15	combination_of_known_splicesites	FALSE	canonical	1	11	junction_10	267.118322746882	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAGATGAGGGATGTG	NA	False	NA	NA	False	NA	NA	NA	95000476	94978925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94999480_94999607_95000263
16571	chr5	-	3368	12	ISM	ENSMUSG00000029512.12	ENSMUST00000200299.2	3581	28	18972	-1605	1111	-1	3prime_fragment	FALSE	canonical	3	128	junction_11	301.657350357642	1	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110938947	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938821_110938917
16572	chr7	-	2995	7	NIC	ENSMUSG00000042502.11	novel	3284	7	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	67	junction_6	200.670058110876	529	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATTGTGGTAATTTAAT	5521	False	NA	NA	False	NA	NA	NA	126795109	126791199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126794958
16573	chr17	+	3540	21	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	0	-22	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_6	45.491620107444	87	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATACAATAATTTGGTG	NA	False	NA	NA	False	NA	NA	NA	45817766	45831747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825848_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
16576	chr18	+	4496	6	ISM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	61	0	61	0	intron_retention	FALSE	canonical	3	1716	junction_5	134.054615735528	8	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTTGTGAGACCAGTG	NA	False	NA	NA	False	NA	NA	NA	67908105	67925663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761
16578	chr17	-	3721	1	NIC	ENSMUSG00000039183.7	novel	1445	7	NA	NA	1	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	31	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	25105311	25101590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25101600_25105300
16579	chr12	-	1923	9	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCCAGGACGCGGGTGC	3508	False	NA	NA	False	NA	NA	NA	24764096	24758594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24758638_24758932_24759103_24759333_24759448_24760362_24760489_24761443_24761541_24761665_24761800_24762657_24762763_24762857_24762972_24763076
16581	chr2	-	3947	13	NNC	ENSMUSG00000041219.15	novel	4458	14	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	142.360067746854	2	76	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAACGTCTTGTCTGCGT	5995	False	NA	NA	False	NA	NA	NA	113679023	113661842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_113662262_113663283_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672347_113673020_113673285_113673591_113673689_113675599_113675671_113678305
16582	chr11	+	2547	12	Antisense	novelGene_ENSMUSG00000004393.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	14	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCGTAGGGCGGGACAAAC	NA	False	NA	NA	False	NA	NA	NA	6208990	6217745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_6209259_6209546_6209621_6211615_6211722_6212456_6212549_6212663_6212737_6213938_6214040_6214130_6214237_6214674_6214793_6215506_6216410_6216514_6216974_6217418_6217579_6217658
16583	chr6	+	2824	3	Antisense	novelGene_ENSMUSG00000029687.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATGATACTGGACTCCTT	4889	False	NA	NA	False	NA	NA	NA	47515063	47520936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_47517785_47519295_47519343_47520880
16586	chr8	-	3373	2	ISM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	4391	19	4391	-15	3prime_fragment	FALSE	canonical	3	4329	junction_1	0	12	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAATAAAACACTAGAAAT	NA	False	NA	NA	False	NA	NA	NA	43755582	43748118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43749574_43753664
16587	chr9	-	2657	12	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	-304	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	76.1088824216403	7	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAACAGCCAGCTAACAAA	NA	False	NA	NA	False	NA	NA	NA	13738707	13719097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719712_13719873_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
16588	chr1	-	5381	31	NIC	ENSMUSG00000005501.15	novel	3977	32	NA	NA	-2	132	combination_of_known_splicesites	FALSE	canonical	2	10	junction_13	9.9154200897166	80	23	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATAAGTCTATTTTGGC	NA	False	NA	NA	False	NA	NA	NA	87936258	87872708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_87874430_87876223_87876319_87877653_87877750_87877880_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893027_87893065_87894905_87894993_87895231_87895321_87901798_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
16589	chr9	-	2856	20	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-14	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	154.208783895312	93	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTCTTGGTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	114469266	114415027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456565_114458074_114458226_114460889_114461052_114461744_114461840_114468986
16590	chr10	-	2388	9	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-30	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	387.75908677296	12	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTCAGCTGTAGAGTGAA	8217	False	NA	NA	False	NA	NA	NA	128540930	128533819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128534515_128534556_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
16591	chr14	+	2752	13	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	58	-7	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_9	312.113883684928	23	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTGAAATTTTCTACTA	1836	False	NA	NA	False	NA	NA	NA	56905762	56934877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56906022_56909861_56910018_56911347_56912233_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56930880_56931036_56933077_56933206_56934115_56934200_56934587
16592	chrX	-	2310	8	NIC	ENSMUSG00000031229.17	novel	1716	9	NA	NA	1	630	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	93.0330202516443	2	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTAAAAAGAAACGCCAGAA	NA	False	NA	NA	False	NA	NA	NA	104972182	104919483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972093
16593	chr1	-	2779	8	NIC	ENSMUSG00000003051.14	novel	1901	9	NA	NA	-19	1	combination_of_known_junctions	FALSE	canonical	3	367	junction_6	98.8790231772634	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGCTCTCTGTGTACT	NA	False	NA	NA	False	NA	NA	NA	135186195	135181311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135182119_135182662_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
16594	chr7	+	3170	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_5	100.677539412467	590	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	980	False	NA	NA	False	NA	NA	NA	97130209	97190605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145023_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
16595	SIRV8001	+	3238	1	FSM	SIRV8001A	SIRV8001	8001	1	4750	13	4750	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	4750	7988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV8001_+_4800_8000
16596	chr1	+	2835	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	5	0	5	0	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	913	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTATTCTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	55170394	55194058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
16597	chr12	+	1845	6	NNC	ENSMUSG00000097055.3	novel	1431	4	NA	NA	-26994	-1418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	295	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCGCCACCGACCAATAGA	NA	False	NA	NA	False	NA	NA	NA	21440329	21467603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21441417_21444965_21445065_21446284_21446449_21448243_21448366_21466858_21467132_21467503
16598	chr5	-	4501	17	NNC	ENSMUSG00000045078.13	novel	4474	17	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	72.0242743368512	1	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTCTGTTTGTCCC	6121	False	NA	NA	False	NA	NA	NA	143098758	142976647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054746_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073399_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143098653
16599	chr14	-	2446	13	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	intron_retention	FALSE	canonical	3	775	junction_8	83.7436564761773	2356	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741018	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
16600	chr3	+	2813	16	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	324.634741756879	56	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742336	157772727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747222_157747297_157747499_157747571_157749197_157749328_157754037_157754197_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
16601	chr11	+	1805	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-11	184	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1420.04582807956	1	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTAACTTGTCATTTTA	NA	False	NA	NA	False	NA	NA	NA	22940614	22953335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952304_22952402_22952816_22952931_22953136
16604	chr17	-	3111	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	74	885	45	-46	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	2	91	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAGTGACATCTTCAGG	NA	False	NA	NA	False	NA	NA	NA	79244421	79227319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
16605	chr12	+	2628	2	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	14416	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86565598	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86567992_86568161
16606	chr11	+	3976	7	NNC	ENSMUSG00000018415.15	novel	4283	6	NA	NA	25	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.227805370067	243	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTCCAATTTGTAAG	NA	False	NA	NA	False	NA	NA	NA	60308112	60336098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60308279_60308555_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
16607	chr16	-	3394	17	NIC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	-7	-1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	43.3452257319073	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGCCCTGGAGGATGT	NA	False	NA	NA	False	NA	NA	NA	57051743	56989225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
16608	chr11	+	1923	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	118	443	-2	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	1	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940636	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
16610	chr3	-	2137	6	NNC	ENSMUSG00000027506.16	novel	6317	6	NA	NA	-2	164	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1152.78608596738	3	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	9069540	8994493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012594_9018743_9018860_9069464
16612	chr3	-	3778	17	NIC	ENSMUSG00000027889.18	novel	3650	18	NA	NA	4	0	intron_retention	FALSE	canonical	3	198	junction_11	20.5174278054048	1	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993963	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
16613	chr5	+	1668	10	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1064.7410860143	17	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	721	False	NA	NA	False	NA	NA	NA	77099588	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114689_77115067
16614	chrX	+	2042	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-18	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1143.95024367321	11	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGCAGCATCACCTTATT	NA	False	NA	NA	False	NA	NA	NA	100473142	100492154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483103_100486544_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
16615	chr14	+	1717	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	36	9	-16	-6	multi-exon	FALSE	canonical	3	2255	junction_1	40	21	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATACACACGTGTTTCT	6575	False	NA	NA	False	NA	NA	NA	76741953	76745196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
16616	chr7	-	3441	27	NNC	ENSMUSG00000003435.10	novel	3755	29	NA	NA	270	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	280.687343169201	1	125	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCTGTTTGAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	28037861	28014334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021732_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025618_28028140_28028201_28028655_28028750_28028840_28028910_28029007_28029080_28029998_28030071_28030794_28030955_28037776
16618	chrX	-	3542	3	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2594	-13	intron_retention	FALSE	canonical	3	77	junction_2	5	104	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGAATGTTCTGGCTA	NA	False	NA	NA	False	NA	NA	NA	72083303	72077606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72080952_72081548_72081672_72083229
16619	chr9	+	3307	20	Antisense	novelGene_ENSMUSG00000099147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	137	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATGCTAGGAAGAAAGCA	205	False	NA	NA	False	NA	NA	NA	20818703	20834207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_20818858_20819166_20819259_20819785_20820051_20820387_20820579_20820984_20821165_20821433_20821602_20822711_20822857_20823030_20823299_20823475_20823576_20823860_20823966_20825205_20825374_20827004_20827243_20828604_20828765_20829199_20829314_20829403_20829600_20829742_20829847_20831135_20831303_20833309_20833496_20833588_20833758_20834070
16620	chr6	+	2470	6	NNC	ENSMUSG00000053119.12	novel	2654	6	NA	NA	5	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	159.75055555459	24	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTTTGTATATTATGC	NA	False	NA	NA	False	NA	NA	NA	71520840	71558558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554798_71556711
16623	chr6	-	4467	32	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	31	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	186.159616204791	1	187	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3524	False	NA	NA	False	NA	NA	NA	125168535	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147111_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161023_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166849_125168447
16625	chr13	+	3117	22	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	-13	35	intron_retention	FALSE	canonical	0	0	junction_21	177.517128936223	7	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGCTGCCCTG	1322	False	NA	NA	False	NA	NA	NA	59733220	59782601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780849_59782231
16626	chr17	-	3021	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-9	-1048	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	271.253340993249	1	106	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAACAGATCCCCAATATT	8728	False	NA	NA	False	NA	NA	NA	24470330	24442219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449373_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459758_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
16628	chr3	-	3191	20	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	-54	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	299.904232174963	2	102	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAAAAGCCTCTTGCGT	NA	False	NA	NA	False	NA	NA	NA	104725486	104702156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702379_104702692_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
16630	chr7	-	2789	11	FSM	ENSMUSG00000030970.17	ENSMUST00000033269.15	2321	11	142	-610	-41	552	multi-exon	FALSE	canonical	3	550	junction_8	136.177861636905	251	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAGTCCTGACATTTAA	NA	False	NA	NA	False	NA	NA	NA	132724954	132588739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869
16632	chr11	-	4306	14	NIC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	-5472	0	intron_retention	TRUE	canonical	3	352	junction_4	39.4244089831241	5	102	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	6011	False	NA	NA	False	NA	NA	NA	115485819	115475080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115476667_115476911_115477023_115477141_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734
16633	chr17	-	3123	3	NIC	ENSMUSG00000008668.16	novel	560	5	NA	NA	-2	-8	intron_retention	FALSE	canonical	3	20050	junction_2	1652.5	4	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATACCTATGACCTCCGT	NA	False	NA	NA	False	NA	NA	NA	34174639	34170985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34171287_34171376_34174151_34174591
16634	chrX	+	1940	12	FSM	ENSMUSG00000031353.14	ENSMUST00000112327.8	1862	12	-39	-39	-20	39	multi-exon	FALSE	canonical	3	69	junction_3	868.427533053443	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543377	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552786_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
16635	chr8	-	3738	10	NIC	ENSMUSG00000002949.16	novel	3041	12	NA	NA	9	-10	intron_retention	FALSE	canonical	3	458	junction_4	37.1745963970552	19	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGCAGTTTGAACGG	NA	False	NA	NA	False	NA	NA	NA	4325904	4309740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4316681_4316769_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
16636	chr16	+	3282	5	FSM	ENSMUSG00000022797.17	ENSMUST00000128285.2	3527	5	245	0	245	0	multi-exon	FALSE	canonical	3	429	junction_2	13.3111795119741	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTGTCGGACTCATTT	NA	False	NA	NA	False	NA	NA	NA	32443504	32451608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
16637	chr10	+	2387	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	28	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	272.669980686079	2	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7018	False	NA	NA	False	NA	NA	NA	60113477	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60137866_60138099
16638	chr1	+	2006	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	719.775705804709	4	27	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTTCTTTGTATTAT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742090_59743287_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
16639	chr16	+	3731	22	Antisense	novelGene_ENSMUSG00000064565.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	49	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGCCTGAAGTCCGTTAA	NA	False	NA	NA	False	NA	NA	NA	10954476	10993971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_10955352_10956886_10957055_10958582_10958715_10959526_10959638_10963107_10963148_10963507_10963642_10964228_10964304_10965128_10965313_10966306_10966410_10967074_10967272_10968458_10968620_10969001_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974428_10976525_10976627_10976828_10977006_10978880_10979064_10980501_10980542_10982453_10982558_10993800
16640	chr17	+	4162	26	NNC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	43.336340408484	1	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCCAGTATTTTTATT	NA	False	NA	NA	False	NA	NA	NA	25352396	25381072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366378_25366445_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375711_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
16643	chr16	-	1680	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	30	113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1740.79187499276	5	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292717	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282619_87282745_87282794_87283123_87283240_87283320_87283409_87283482_87283571_87284525_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
16644	chr1	+	2453	15	NIC	ENSMUSG00000026192.14	novel	2845	16	NA	NA	-6	-227	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	168.221671054133	15	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTGTGGTTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	71596365	71618563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
16648	chr6	-	5689	12	Antisense	novelGene_ENSMUSG00000107539.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	135	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGATGGCGGCGAGCC	NA	False	NA	NA	False	NA	NA	NA	86409762	86381292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_86381505_86390785_86390883_86393284_86393389_86395863_86395923_86396089_86397394_86400587_86401399_86401941_86402053_86402431_86402521_86402634_86402727_86403547_86403673_86404655_86404799_86407220
16649	chr17	-	2404	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	-87	3	-25	1	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	1039	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34250681	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
16650	chr7	-	3515	21	NIC	ENSMUSG00000030766.16	novel	3372	21	NA	NA	-108	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	48.4230317101274	380	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAACTTGCTAATTCTT	NA	False	NA	NA	False	NA	NA	NA	122969246	122878500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
16651	chr5	-	3657	18	NNC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	94.101800136487	1	105	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGATTTTGAGCCATGC	NA	False	NA	NA	False	NA	NA	NA	9211751	9168872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179341_9180362_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190475_9198899_9199008_9200375_9200493_9201797_9201919_9211613
16652	chr9	-	2770	10	NIC	ENSMUSG00000031922.13	novel	2262	10	NA	NA	-19	-7	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	92.2413634754087	15	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAACAGCCAGCTAACAAA	NA	False	NA	NA	False	NA	NA	NA	13738422	13719097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13737837
16654	chr12	-	2613	14	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	0	-7	intron_retention	FALSE	non_canonical	0	0	junction_1	274.351370611144	4	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTCAATTCTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	87519039	87496686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497158_87497226_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
16655	chr5	+	2246	9	NIC	ENSMUSG00000079562.8	novel	775	5	NA	NA	32	-5	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	188.916648287016	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTGTGAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	33493560	33530635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33493756_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
16656	chr2	+	2966	4	NNC	ENSMUSG00000045822.5	novel	2708	2	NA	NA	104	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.4142135623731	7	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGTTTGTGTTTTTTGAG	3167	False	NA	NA	False	NA	NA	NA	164647121	164664047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164647352_164654713_164654913_164656900_164657067_164661676
16658	chr2	-	3562	13	Antisense	novelGene_ENSMUSG00000068040.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	47	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGTGATGACGTCAGCGGA	NA	False	NA	NA	False	NA	NA	NA	153042561	153003460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_153003491_153020807_153020921_153024305_153024406_153029177_153029350_153029446_153029582_153030871_153030996_153032748_153032868_153032968_153033076_153033843_153033921_153036194_153036330_153037230_153037311_153037407_153037486_153040269
16659	chr19	+	3308	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	131	21	-20	-21	multi-exon	FALSE	canonical	3	652	junction_7	60.0436480355873	1	103	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTTAATTTGGACCAAA	NA	False	NA	NA	False	NA	NA	NA	10160382	10174217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
16661	chr17	+	2959	7	NNC	ENSMUSG00000071266.14	novel	2926	7	NA	NA	-5	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	29.6690073982936	149	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGAACTTAGACTTGGTT	NA	False	NA	NA	False	NA	NA	NA	22643197	22675659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670075_22670134_22672432_22672560_22673404
16662	chr10	-	6552	41	ISM	ENSMUSG00000040249.16	ENSMUST00000049149.15	14888	89	63538	3	-7693	-3	3prime_fragment	FALSE	canonical	3	22	junction_39	13.3701159306866	74	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAACCCACTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	127393479	127374032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127374960_127375101_127375247_127375340_127375432_127375535_127375601_127375726_127375829_127376021_127376197_127376487_127376650_127376818_127376993_127377102_127377244_127377507_127377685_127378053_127378171_127378435_127378543_127378955_127379135_127380287_127380557_127381403_127381524_127381599_127381735_127381868_127382010_127382262_127382386_127382705_127382826_127384183_127384317_127384406_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387632_127388029_127388179_127388579_127388769_127389235_127389442_127389560_127389749_127390132_127390253_127390449_127390536_127390816_127391001_127391522_127391714_127391859_127392001_127392078_127392202_127392476_127392606_127392752_127392870_127393062_127393186_127393280
16663	chr11	+	1795	11	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	628.030381430708	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471300	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479050_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
16664	chr8	-	2138	13	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	-14	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	412.413290549932	142	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCAGTCATGCATGCT	7625	False	NA	NA	False	NA	NA	NA	41827686	41793698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
16666	chr17	-	3042	9	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	19.1882125274868	13	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTTTGTATTTTAC	NA	False	NA	NA	False	NA	NA	NA	22533818	22504851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22506228_22506982_22507883_22508749_22508877_22511388_22511437_22528185_22528296_22528485_22528579_22531009_22531223_22532217_22532302_22533727
16667	chr2	+	2203	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-7	intron_retention	FALSE	canonical	3	132	junction_7	705.060628598704	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGATAGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120816
16669	chr9	+	2303	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	114.995898669366	2	30	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385256	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385622_108386107_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
16672	chr19	+	3047	12	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-5	71	intron_retention	FALSE	non_canonical	0	0	junction_10	321.35624268208	3	74	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACATGGTAATAATTTT	-1	True	NA	NA	False	NA	NA	NA	46064422	46072971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070816_46070954_46071066_46071178_46071803_46071958_46072025_46072189_46072283_46072450
16674	chr17	-	2227	9	NNC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	744.677446952706	5319	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCCTGATATTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	80514732	80507512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80507832_80507877_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
16675	chr2	+	1919	5	ISM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	55	14513	2	1283	5prime_fragment	FALSE	canonical	3	52	junction_4	23.0475052879916	33	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAATTAAACCGGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	73142999	73153649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328
16676	chr4	+	2252	15	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	32	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	196.371680073003	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAACTGTGTTCGCTTTC	NA	False	NA	NA	False	NA	NA	NA	124923816	124949171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928127_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
16677	chr7	-	4070	6	NIC	ENSMUSG00000002635.12	novel	1295	7	NA	NA	-7	-4	intron_retention	FALSE	canonical	3	713	junction_1	37.7232024091275	11	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATATATATGTGTTTACC	5725	False	NA	NA	False	NA	NA	NA	33896093	33884061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33884237_33885718_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
16678	chr1	+	2940	10	NNC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-87	-326	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	43.7543648616277	217	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	NA	False	NA	NA	NA	173246674	173293272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_173247122_173248136_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287669_173289472_173289887_173291424_173291614_173292536
16680	chr3	-	2647	14	NIC	ENSMUSG00000028099.9	novel	2406	15	NA	NA	43	0	intron_retention	FALSE	canonical	3	35	junction_13	54.3563739097393	53	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	96634901	96618838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631369_96633149_96633316_96634428
16681	chrX	+	5072	15	NNC	ENSMUSG00000031216.14	novel	4963	14	NA	NA	72	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	14.1452018258446	61	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGCTCTGGAGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	98086258	98118334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_98086401_98092386_98092568_98104333_98104406_98106970_98107053_98107999_98108064_98109163_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
16682	chr15	-	2735	12	NIC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	13	0	intron_retention	FALSE	canonical	3	2534	junction_3	122.477793568285	21	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2676	False	NA	NA	False	NA	NA	NA	43146102	43113453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
16683	chr11	-	1752	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	30	44	7	-44	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	1724	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGCTACAACTGTGA	NA	False	NA	NA	False	NA	NA	NA	115977791	115969442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
16685	chr18	+	2857	11	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	337.479836434712	42	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTGCAATTCTGAGACT	NA	False	NA	NA	False	NA	NA	NA	68433468	68454976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68448063_68451064_68451183_68452188_68452291_68453296_68453331_68454388
16686	chr13	-	4376	14	ISM	ENSMUSG00000021374.11	ENSMUST00000021803.10	6109	22	20048	194	-75	-194	3prime_fragment	FALSE	canonical	3	242	junction_11	29.1622679128782	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACAGTTTTCATAGTG	NA	False	NA	NA	False	NA	NA	NA	46861368	46833574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_46834719_46834999_46835169_46836472_46836746_46837358_46837713_46840098_46840975_46842534_46842727_46846987_46847594_46850121_46850245_46853124_46853210_46854464_46854564_46855079_46855215_46858115_46858243_46858644_46858692_46861222
16687	chr15	+	2742	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-4	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	478.741921069817	1	90	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTAATGTTCTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	81756680	81799326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789072_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
16688	chr11	+	2354	14	NIC	ENSMUSG00000007850.17	novel	2427	15	NA	NA	-54	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	138.150077042983	167	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50267762	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50267975_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
16690	chr9	-	4763	25	FSM	ENSMUSG00000032175.12	ENSMUST00000214454.2	4770	25	6	1	-5	-1	multi-exon	FALSE	canonical	3	60	junction_24	14.2647949512077	103	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTTGCTTGCA	NA	False	NA	NA	False	NA	NA	NA	21042533	21015366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21016480_21016559_21016671_21018778_21018897_21019160_21019334_21020069_21020189_21020530_21020724_21021429_21021528_21021747_21021899_21022301_21022457_21022540_21022677_21025488_21025617_21026487_21026576_21026667_21026845_21026939_21027044_21027130_21027327_21027428_21027538_21031555_21031714_21031798_21032000_21032687_21033055_21035272_21035437_21035706_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
16692	chr17	+	2284	9	NIC	ENSMUSG00000023990.19	novel	2296	8	NA	NA	832	-1	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	141.519378090069	414	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTATGTTGTCCTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	48050659	48103339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_48050894_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
16693	chr11	-	664	1	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	25686	1818	2027	978	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97053021	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97052400_97053000
16695	chr18	-	3804	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	601.196268429685	1	171	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTAATAAACTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	42395156	42335439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350671_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366948_42367647_42367787_42368549_42368604_42369643_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
16696	chr7	+	6319	18	FSM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	26	235	26	-235	multi-exon	FALSE	canonical	3	73	junction_5	8.32971086202773	236	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCCTTACGCTATCAGTT	NA	False	NA	NA	False	NA	NA	NA	120442079	120506438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
16697	chr13	-	451	2	NNC	ENSMUSG00000016477.19	novel	5097	7	NA	NA	66	-66626	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGCGGCGGCGGCGGTGG	NA	False	NA	NA	False	NA	NA	NA	30169980	30169309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_30169411_30169630
16698	chr12	-	2507	10	NNC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	801.408205043542	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTCTGTCACTGTCT	NA	False	NA	NA	False	NA	NA	NA	108860063	108825964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826083_108826259_108827353_108828728_108828870_108831938_108832226_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
16700	chr18	-	4357	20	NIC	ENSMUSG00000048799.9	novel	4554	21	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	1	8	junction_14	71.811194429764	171	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTGTGTGGTCGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	53877622	53814796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
16701	chr2	+	2512	9	Intergenic	novelGene_2744	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	79	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGATCTACGCCTGGCGCC	8633	False	NA	NA	False	NA	NA	NA	154901655	154916372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_154902501_154904068_154904261_154905696_154905820_154905909_154905996_154906072_154906806_154907436_154907602_154909229_154909323_154910752_154910956_154916300
16702	chr16	+	2175	10	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	20	42	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_7	319.973532856071	57	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCTGGAGTGACATTCA	NA	False	NA	NA	False	NA	NA	NA	38383193	38411750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383410_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38407560_38407742_38408544_38408666_38411273
16703	chr14	-	2768	6	NIC	ENSMUSG00000021965.4	novel	2260	9	NA	NA	0	168	intron_retention	FALSE	canonical	3	189	junction_1	18.0377382174152	27	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAACTTGGTGTTAGTAAT	NA	False	NA	NA	False	NA	NA	NA	58063620	58047252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
16705	chr3	+	2786	5	NNC	ENSMUSG00000046722.15	novel	2805	5	NA	NA	-1461	-1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	170.332579091611	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACGGTTTCAGAGTAAT	202	False	NA	NA	False	NA	NA	NA	95138136	95143719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95138253_95139095_95139404_95139859_95139971_95140798_95140891_95141560
16706	chr15	-	4133	23	NNC	ENSMUSG00000047921.18	novel	4048	22	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	48.4420075881827	144	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTTGATTTCAGACT	NA	False	NA	NA	False	NA	NA	NA	72933111	72461468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_72462012_72462464_72462689_72557131_72557222_72565351_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72914025_72914053_72922443_72922573_72924010_72924157_72929770_72930364_72932809
16707	chr7	-	1878	9	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-40	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	698.283072972559	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTTGATCTCTATTGG	8825	False	NA	NA	False	NA	NA	NA	141941634	141929662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934637_141936328_141936448_141937154_141937279_141939195_141939356_141941473
16708	chr18	-	3223	17	NIC	ENSMUSG00000053644.14	novel	1914	18	NA	NA	-5	-9	combination_of_known_junctions	FALSE	canonical	3	343	junction_7	36.88956280237	6	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCATTTAGCAAAAGATAG	NA	False	NA	NA	False	NA	NA	NA	56695303	56659830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
16710	chr16	+	2648	7	NIC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	178	junction_1	113.988912716203	980	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	17577442	17611246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
16711	chrX	+	2751	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	51	2	51	-2	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	4	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	74139510	74153381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
16712	chr15	+	2931	19	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-17	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	66.7516125481458	6	49	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	2078	False	NA	NA	False	NA	NA	NA	57779391	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57827220_57827321_57831304_57831401_57833119
16713	chr2	-	2622	3	NNC	ENSMUSG00000027551.16	novel	2438	6	NA	NA	18893	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	191	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCGTATAGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	168778293	168767290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168768854_168777130_168778124_168778227
16714	chr15	+	2830	18	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	67.7287997193121	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775634	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57775788_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
16715	chr11	+	1201	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	409	16	409	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	120654028	120655229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120654000_120655200
16716	chr2	+	3602	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	-4	-295	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	219.022068903265	17	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGCCTACACAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	104389519	104401479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389756_104390068_104390321_104398205_104398836_104398995
16717	chr10	-	2799	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	18	-3	at_least_one_novel_splicesite	FALSE	canonical	1	54	junction_8	868.955049984022	1	112	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCAGTGCTTATTTTCA	NA	False	NA	NA	False	NA	NA	NA	86541355	86526706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531528_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
16718	chr9	+	895	7	NNC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	22	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	688.517348284623	28	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAAGATTGGTTATGGTG	NA	False	NA	NA	False	NA	NA	NA	54858120	54865303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54863585_54863672_54864094_54864219_54864918
16719	chr7	-	4059	23	NIC	ENSMUSG00000063550.9	novel	3748	23	NA	NA	-28	4	combination_of_known_junctions	FALSE	canonical	3	26	junction_22	30.1171610287184	78	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTCAGGAAAATCCATTC	9951	False	NA	NA	False	NA	NA	NA	101859102	101783405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101858945
16720	chr7	-	3332	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	423.610195383841	1	98	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198224	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182634_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184602_44185118_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192256_44192671_44192861_44198178
16721	chr17	-	1757	3	Genic_Genomic	ENSMUSG00000066878.6	novel	1988	1	NA	NA	82	-14	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90217795	90215903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_90216523_90216618_90217096_90217134
16722	chr15	-	2589	10	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-89	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	804.274414197874	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGATCTTGACCTTCC	NA	False	NA	NA	False	NA	NA	NA	81283884	81247876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249656_81255732_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
16723	chr4	-	2862	9	NNC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	2	0	intron_retention	FALSE	canonical	2	3	junction_1	144.980979355914	5	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5487	False	NA	NA	False	NA	NA	NA	132073010	132059233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132060314_132060928_132061571_132061795_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
16724	chr12	-	4788	21	FSM	ENSMUSG00000034126.6	ENSMUST00000037788.6	5064	21	273	3	-155	-3	multi-exon	FALSE	canonical	3	48	junction_16	10.2834819006016	105	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTGTTCTTGTGCTTG	5922	False	NA	NA	False	NA	NA	NA	87194403	87153637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87156068_87156777_87156893_87157075_87157217_87158110_87158217_87158297_87158358_87158652_87158725_87163304_87163382_87164158_87164251_87164712_87164865_87166345_87166425_87169615_87169686_87171585_87171653_87174075_87174186_87175726_87175810_87177062_87177170_87178445_87178606_87180133_87180243_87182268_87182378_87184776_87184882_87186417_87186503_87193944
16725	chr7	-	1312	1	Antisense	novelGene_ENSMUSG00000030604.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCTTTCGACTCGCCAG	NA	False	NA	NA	False	NA	NA	NA	27520774	27519462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_27519500_27520800
16726	chr4	+	5889	44	FSM	ENSMUSG00000038368.17	ENSMUST00000097992.10	5791	44	2	-100	2	95	multi-exon	TRUE	canonical	0	0	junction_35	26.0666035463672	142	92	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATTGAGTTTTATTCTT	NA	False	NA	NA	False	NA	NA	NA	88012868	88329343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88114995_88115254_88147559_88147665_88148069_88148172_88148688_88148820_88150892_88151020_88192334_88192470_88196445_88196497_88197456_88197541_88215220_88215339_88221681_88221868_88228028_88228151_88244379_88244473_88249205_88249295_88254404_88254450_88257421_88257531_88260439_88260557_88262815_88263055_88267040_88267131_88273604_88273753_88275680_88275801_88277483_88277607_88278063_88278142_88278753_88278826_88286909_88287013_88288991_88289073_88310195_88310325_88311769_88311886_88315211_88315473_88316078_88316169_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
16727	chr7	+	3180	1	FSM	ENSMUSG00000077903.3	ENSMUST00000104710.3	84	1	-2805	-291	-2805	291	mono-exon	FALSE	NA	NA	NA	NA	NA	642	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGCTTTCTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	3266509	3269689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3266500_3269700
16728	chr15	-	2270	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	101	2046	101	1555	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTTTAGCTGACACACT	256	False	NA	NA	False	NA	NA	NA	37007545	36999316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
16729	chr2	-	1548	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	45	5	-3	-5	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	9672	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTCGCCTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	25114669	25112176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
16730	chr5	-	2245	5	ISM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	3259	443	-956	-443	3prime_fragment	FALSE	canonical	0	0	junction_4	293.533643727597	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGATACGGTATTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	124713935	124708718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660
16732	chr18	+	3516	5	NNC	ENSMUSG00000102918.2	novel	3588	5	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.762772928722	13	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	37939439	37974926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_37939713_37940906_37942031_37958073_37958133_37966317_37966407_37972955
16733	chr13	+	3335	12	NNC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	268.450558724207	3	107	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCAGCTCTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	120151997	120169614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120156524_120156584_120161056_120161108_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
16734	chrX	+	2697	23	NIC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	-59	-101	combination_of_known_junctions	FALSE	canonical	3	128	junction_19	294.594121260068	3	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCAGCCGCAGCCACAGC	NA	False	NA	NA	False	NA	NA	NA	143118805	143152666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143139791_143139958_143146860_143147104_143150894_143150936_143152556
16735	chr11	+	2353	12	NIC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-10	-9	intron_retention	FALSE	canonical	3	528	junction_1	55.6675491921267	108	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTCTGAATAGTATCTG	4324	False	NA	NA	False	NA	NA	NA	102321333	102327624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326769_102326849_102327075_102327160
16736	chr17	-	3215	2	ISM	ENSMUSG00000024327.17	ENSMUST00000167145.2	844	4	-568	-1570	24	-3	intron_retention	FALSE	canonical	3	633	junction_1	0	4	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACATGCAGCCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	34250570	34247249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34248958_34249063
16737	chr11	-	2474	12	NNC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-258	-8	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	157.931567982115	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGGAAGCCAGCTATC	NA	False	NA	NA	False	NA	NA	NA	6575717	6566432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575444
16738	chr7	+	1041	1	Intergenic	novelGene_3039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGCATGCCTTTAATCC	2029	False	NA	NA	False	NA	NA	NA	127246573	127247614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_127246600_127247600
16739	chr15	+	2191	13	NIC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	5	1	combination_of_known_junctions	FALSE	canonical	2	41	junction_1	408.887948179775	1396	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGCTAGTCATTTATT	200	False	NA	NA	False	NA	NA	NA	38662192	38692688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_38662466_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
16740	chr11	-	4084	6	NIC	ENSMUSG00000018669.15	novel	2201	13	NA	NA	-7	50	intron_retention	FALSE	canonical	3	1008	junction_4	80.2281746021932	9	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGTGCACATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	96807225	96798591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96804623_96806976
16741	chr5	+	2006	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-180	-14	intron_retention	FALSE	non_canonical	0	0	junction_2	1198.41928201703	3	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTGTATAACAATATATT	576	False	NA	NA	False	NA	NA	NA	77099443	77115338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77108949_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
16742	chr2	+	2274	10	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-6	intron_retention	TRUE	non_canonical	0	0	junction_7	992.279878877271	1	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGATAGTATGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	130116365	130121221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119235_130119395_130119559_130119795_130119891_130120075_130120211_130120816
16743	chr9	-	1218	3	NNC	ENSMUSG00000051234.7	novel	1232	3	NA	NA	3	-39	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_1	546	46	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAACTAATTCATCAATTA	3803	False	NA	NA	False	NA	NA	NA	96360638	96353028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96353906_96355895_96356059_96360460
16744	chr16	-	2076	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	1	16	1	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	1	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCCTAAAAAAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	45975439	45973363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
16747	chr1	+	2081	17	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-13	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	701.819499141339	7	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTATAAGGCAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	59724116	59750660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742010_59742060_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
16748	chr7	-	2855	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	21	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.187751916423	32	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTACGTTTACTTACTG	NA	False	NA	NA	False	NA	NA	NA	42155128	42122816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123160_42124246_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42155033
16749	chr16	+	2436	2	Genic_Genomic	ENSMUSG00000092029.2	novel	661	1	NA	NA	-140	1817	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGATAAGACCTTATA	NA	False	NA	NA	False	NA	NA	NA	61197478	61200096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_61197617_61197798
16750	chr10	-	2505	8	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-3	-4	intron_retention	FALSE	canonical	3	20	junction_7	395.995464826638	901	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCAGCTGTAGAGTGAAT	8244	False	NA	NA	False	NA	NA	NA	128540903	128533818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540479
16751	chr13	+	3159	11	NNC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	-5	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	203.152775024118	2	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTAGACAAATATTTCAG	NA	False	NA	NA	False	NA	NA	NA	120151976	120169604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924_120168875_120168951
16752	chr16	-	1984	7	NIC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-21	-75	intron_retention	FALSE	canonical	0	0	junction_6	1017.1841442597	37	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGTGTATTTGCTGATG	1000	False	NA	NA	False	NA	NA	NA	11021149	11010908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_11011602_11012323_11012576_11014137_11014431_11017248_11017584_11019158_11019295_11020181_11020322_11021014
16753	chr2	+	4185	15	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	2	-8	intron_retention	FALSE	canonical	0	0	junction_1	620.61241971959	1	144	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCCCAGTGTTGATGGA	NA	False	NA	NA	False	NA	NA	NA	157125504	157167968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157125698_157131451_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
16756	chr1	-	2389	11	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	439.305144518022	1	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624048	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601136_177601268_177603146_177603261_177610408_177610460_177611614_177611684_177612461_177612565_177623777
16757	chr4	-	613	2	Intergenic	novelGene_1814	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	82	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAACTTAGATGATC	6385	False	NA	NA	False	NA	NA	NA	32160909	32159396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_32159894_32160793
16758	chr1	+	3133	16	NNC	ENSMUSG00000026427.17	novel	3465	16	NA	NA	15	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	228.596237939298	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATCTGCCCTGGTCTTC	NA	False	NA	NA	False	NA	NA	NA	131080932	131107726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131106336_131106722_131106797
16759	chr7	+	3755	5	NNC	ENSMUSG00000078779.5	novel	1962	4	NA	NA	227	335	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	73.9611384444561	115	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTGTTTATTTTGCA	635	False	NA	NA	False	NA	NA	NA	27538258	27556198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27538350_27542264_27542313_27543709_27543837_27545828_27545928_27552808
16760	chr11	-	4077	28	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	1975	-107	intron_retention	FALSE	canonical	3	67	junction_19	53.8773183454667	1	100	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACAGCCTGCAAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	60616074	60605075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611321_60611463_60611612_60611903_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983
16761	chr13	-	1698	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	10	474	10	-474	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	96	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGTGTCCTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	34314327	34311204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
16762	chr6	-	3292	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202143.4	3202	11	-90	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	54.0722664588789	125	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGGGTGAGTCTTGTTC	7655	False	NA	NA	False	NA	NA	NA	35110650	34998999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_35000368_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
16763	chr4	+	1989	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	117	14	117	-14	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	2304	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTCTAGGTCCTATCAG	NA	False	NA	NA	False	NA	NA	NA	138032157	138039925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
16764	chr4	+	3473	24	NIC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	24	5	intron_retention	FALSE	canonical	3	165	junction_8	22.1513952160785	332	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAACTATCAGTTTTAT	3557	False	NA	NA	False	NA	NA	NA	108477160	108491307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
16765	chr10	+	4120	9	NNC	ENSMUSG00000078429.10	novel	4817	8	NA	NA	217	-27	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	131.579764306674	322	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAATAAAGGCTGGTTTAA	NA	False	NA	NA	False	NA	NA	NA	126815114	126835811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126815171_126827399_126827546_126828467_126828507_126828876_126828979_126829720_126829778_126831723_126831817_126831894_126832081_126832229_126835238_126835378
16766	chr9	-	3161	20	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6363	37233	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	88	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGCCACGCGGTTTTC	5020	False	NA	NA	False	NA	NA	NA	21316653	21279304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299403_21299446_21299818_21300049_21300600_21300780_21303590_21303739_21305005_21305097_21305488_21305586_21306125_21306237_21306665_21306763_21307313_21307425_21307509_21307621_21308762_21308967_21310427_21310545_21310709_21310888_21310978_21311135_21311252_21311310_21314431_21314687_21315360_21315486_21315989
16768	chrX	-	2509	9	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	32	-3	intron_retention	FALSE	canonical	3	1264	junction_8	80.0698913449993	7	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGCCCTGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	72830471	72822571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72825396_72825611_72826323_72830380
16769	chr5	+	3210	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	-4	1653	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	6081	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTCATTTTTACCTGGT	NA	False	NA	NA	False	NA	NA	NA	73450145	73473065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
16770	chr14	-	3425	9	NIC	ENSMUSG00000022003.8	novel	3588	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	14.3172754042101	9	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGGCTTACAGTCATT	NA	False	NA	NA	False	NA	NA	NA	76024445	75997556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76024364
16771	chr4	+	2565	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-3	3327	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	127.689401805057	7	79	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTGTGTGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	147576870	147601270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597357_147597440_147597627_147597875_147598141_147600031
16772	chr8	-	2140	16	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-25	-1699	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	375.222150495173	1	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCAAATCAGTGCATGGA	NA	False	NA	NA	False	NA	NA	NA	86026123	85988719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001645_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
16774	chr17	-	4528	13	NIC	ENSMUSG00000024002.19	novel	4486	13	NA	NA	81	-62	combination_of_known_splicesites	FALSE	canonical	2	4	junction_12	95.8195642282352	45	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAATTTGTGTTGGAGTC	NA	False	NA	NA	False	NA	NA	NA	32502983	32423945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32425968_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32502832
16776	chr13	+	2143	10	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	783.911575386339	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588134	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610082_3611865_3612038_3614539_3614694_3614977
16777	chr19	-	3288	14	FSM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	33	260	-1	-260	multi-exon	FALSE	canonical	3	133	junction_12	11.4813973542901	510	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATAAAAATCTCCTGACC	NA	False	NA	NA	False	NA	NA	NA	44124282	44097335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
16779	chr7	-	3431	20	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	-8	intron_retention	FALSE	canonical	3	131	junction_16	18.6724202978187	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGATTTCTGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	140697703	140681145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
16780	chr13	-	3346	5	NNC	ENSMUSG00000071281.13	novel	733	5	NA	NA	8	-286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.0837651064668	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATGGGGCAAGTAAAGAC	NA	False	NA	NA	False	NA	NA	NA	67872405	67853713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67855992_67856302_67857049_67858433_67858530_67858999_67859127_67872306
16781	chr6	-	4026	29	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	46	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	214.002741733343	5	141	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGTCCTGGCTGGTCTG	3539	False	NA	NA	False	NA	NA	NA	125168520	125144967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148473_125150322_125150493_125150573_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161023_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163247_125163716_125163776_125164039_125164116_125166725_125166872_125168460
16782	chr12	+	1970	9	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	43	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2038.14824043787	2	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAGTATTAAATGATTTA	NA	False	NA	NA	False	NA	NA	NA	24758282	24764107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762896_24762974_24763078
16784	chr8	+	2955	16	NIC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	-104	-1131	intron_retention	FALSE	canonical	3	978	junction_11	66.8196245291922	4	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATGGCCAGCAGGCTG	3305	False	NA	NA	False	NA	NA	NA	106939053	106978295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
16786	chrX	-	3705	10	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.6146120760757	63	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTCTGTATCATATTT	NA	False	NA	NA	False	NA	NA	NA	156381659	156330819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333190_156337885_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
16787	chr17	+	3800	21	ISM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	7	13	7	-13	intron_retention	FALSE	canonical	3	146	junction_8	22.9436265659987	20	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTTGGTGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	45817773	45831756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629
16789	chr8	+	2264	1	Antisense	novelGene_ENSMUSG00000031949.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCAGCCTGGTCTACAA	NA	False	NA	NA	False	NA	NA	NA	112693900	112696164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112693900_112696200
16790	chr10	+	3950	17	NNC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	-1	12	intron_retention	FALSE	canonical	0	0	junction_8	177.58519082401	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTGAACCTATTAAGAA	NA	False	NA	NA	False	NA	NA	NA	93289271	93320692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305068_93307157_93307828_93308760_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93317335_93317388_93318111_93318195_93318823_93318929_93320524
16791	chr16	-	1800	4	NNC	ENSMUSG00000002844.10	novel	2966	4	NA	NA	20	-1090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	591.036941879834	1279	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCAGGGACACTGTTAAGT	NA	False	NA	NA	False	NA	NA	NA	38273024	38265481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38266467_38267609_38267971_38270490_38270825_38272904
16793	chr2	+	4223	27	NNC	ENSMUSG00000027598.17	novel	5309	26	NA	NA	4	-1154	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	79.4998883553978	1	83	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGCCTTATTTCTCTAAT	NA	False	NA	NA	False	NA	NA	NA	154975454	155067619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_154975506_154980115_154980193_154999693_154999896_155005312_155005404_155010603_155010746_155014376_155014502_155015859_155015992_155020096_155020208_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155051043_155051143_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
16795	chr7	-	3878	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	-38	11	8	-11	multi-exon	FALSE	canonical	3	50	junction_1	4	48	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAGTAAAAATGTTCACAT	NA	False	NA	NA	False	NA	NA	NA	140402083	140389612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140393228_140398500_140398628_140401947
16796	chr4	+	1596	8	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-1284	126	intron_retention	FALSE	canonical	3	892	junction_5	62.7111941964991	1	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCTCTATGTCTTTTAT	8393	False	NA	NA	False	NA	NA	NA	155970951	155973316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155971445_155971572_155971657_155971888_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
16797	chr8	-	2259	10	NNC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	249.700314204008	2	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	110419883	110397959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406092_110406140_110408734_110408827_110409229_110409411_110410307_110410411_110419815
16799	chr11	-	2298	11	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9014	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.376713840993	25	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	410	False	NA	NA	False	NA	NA	NA	106615234	106545043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545303_106575067_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
16800	chr17	-	5421	27	FSM	ENSMUSG00000014426.10	ENSMUST00000089058.7	5441	27	15	5	5	-5	multi-exon	FALSE	canonical	2	131	junction_25	36.3765644044325	112	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAAGTCAGCGTCTGTTAC	NA	False	NA	NA	False	NA	NA	NA	12537668	12446512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_12447008_12448403_12448584_12451298_12451406_12451800_12451924_12453937_12454098_12454785_12454903_12455867_12455939_12456925_12457118_12458265_12458347_12458856_12458958_12461536_12461693_12462386_12462484_12466189_12466257_12466939_12467019_12467790_12467925_12468383_12468546_12472968_12473119_12473883_12474151_12475477_12475562_12475648_12475749_12476800_12476918_12479337_12479496_12480130_12480278_12482792_12483036_12489749_12491108_12496807_12496999_12537384
16802	chr2	-	2641	18	FSM	ENSMUSG00000034906.16	ENSMUST00000110387.4	2695	18	27	27	-25	-9	multi-exon	FALSE	canonical	3	394	junction_9	30.9044738701424	83	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAAGTGTCTGAGTGCC	NA	False	NA	NA	False	NA	NA	NA	126975847	126945755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
16803	chr15	+	520	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	1	279	0	-5	multi-exon	FALSE	canonical	3	1912	junction_2	63.4367576584918	6019	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCATAATCCAGCCCTT	NA	False	NA	NA	False	NA	NA	NA	78810925	78814386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
16804	chr10	-	2963	10	Antisense	novelGene_ENSMUSG00000037608.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGGGGCGTGGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	20209637	20188217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20188349_20193751_20193856_20197746_20197861_20198706_20199613_20200883_20201550_20201673_20201844_20203845_20203952_20205050_20205139_20207829_20208005_20209134
16805	chr13	+	3586	13	NNC	ENSMUSG00000017756.10	novel	5142	24	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	208.914389696407	10	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTTCGTGTGCCTCATT	NA	False	NA	NA	False	NA	NA	NA	73911804	73964869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_73912010_73932637_73932699_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
16806	chr2	-	2950	8	NNC	ENSMUSG00000039449.15	novel	3522	10	NA	NA	8385	-105	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	61.4315613890277	23	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCTATTGACTGTGTCC	3606	False	NA	NA	False	NA	NA	NA	4648507	4626973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4628701_4628745_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461
16807	chr5	-	4315	20	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	187.846123742243	1	160	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	31331843	31313348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331302_31331410_31331434_31331575
16808	chr12	-	2689	9	NIC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	639.919330853507	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860063	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_108827353_108828728_108828870_108831938_108832226_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
16810	chr8	-	2617	1	NIC	ENSMUSG00000031835.17	novel	6789	22	NA	NA	2557	4118	mono-exon	FALSE	NA	NA	NA	NA	NA	1	70	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACATATTTCTCGACTAT	NA	False	NA	NA	False	NA	NA	NA	120263148	120260531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_120260500_120263100
16811	chr2	+	2974	3	NNC	ENSMUSG00000096484.2	novel	732	2	NA	NA	-797	478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	25	48	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGATGACAGAATGTGGA	NA	False	NA	NA	False	NA	NA	NA	83802669	83806437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_83802704_83803378_83804861_83804979
16812	chr10	+	2695	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	323	-1552	323	1552	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	3073	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTTGACTCTGCCATT	NA	False	NA	NA	False	NA	NA	NA	13428960	13440672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
16813	chr10	+	363	2	Intergenic	novelGene_3397	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTACTTTCATTCTTGA	NA	False	NA	NA	False	NA	NA	NA	13442561	13443022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_13442683_13442780
16814	chr4	+	4114	19	NNC	ENSMUSG00000040455.18	novel	3977	19	NA	NA	4	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	9.19087711930816	127	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGCCTATTTTAGTTCC	-4	True	NA	NA	False	NA	NA	NA	21776275	21837862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234_21834681_21836557
16815	chr4	-	4261	15	FSM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	197	1511	197	-1511	multi-exon	TRUE	canonical	3	44	junction_12	6.2974727681274	149	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATCCCTTGACATGTA	NA	False	NA	NA	False	NA	NA	NA	141518005	141489010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141491206_141491878_141492050_141493794_141493894_141493972_141494054_141495018_141495096_141495201_141495385_141497163_141497348_141498217_141498349_141501811_141501971_141502676_141502782_141504205_141504391_141510083_141510418_141511998_141512066_141516199_141516385_141517900
16816	chr10	-	2973	17	NNC	ENSMUSG00000020130.10	novel	3752	17	NA	NA	10310	-586	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	158.299952621597	10	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTTTCAGTTACA	NA	False	NA	NA	False	NA	NA	NA	115076848	115034362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_115034494_115034566_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046178_115048601_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753
16817	chr8	-	3649	19	NNC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	9	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	208.242239343783	2	120	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCCTCTAGCTGTGGAT	NA	False	NA	NA	False	NA	NA	NA	73228996	73214328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218347_73220230_73220403_73221606_73221649_73221685_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224062_73224714_73224900_73228455_73228630_73228901
16818	chr7	-	4946	27	NNC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	-8700	-8	intron_retention	FALSE	canonical	0	0	junction_9	44.0343632624453	3	163	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCCTGGAACCTTCCC	NA	False	NA	NA	False	NA	NA	NA	29970772	29939575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942956_29943257_29943386_29943897_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573
16819	chr3	-	2810	6	NNC	ENSMUSG00000027828.13	novel	2957	5	NA	NA	-26	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	246.814424213821	1	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTGTTTTTCTGTAA	2760	False	NA	NA	False	NA	NA	NA	65300000	65287079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_65288355_65288453_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
16820	chrX	-	4289	4	FSM	ENSMUSG00000087403.10	ENSMUST00000181635.8	398	4	2	-3893	2	-8	multi-exon	FALSE	canonical	3	22	junction_1	27.8128667266709	111	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAAGTGAATGACTGTG	NA	False	NA	NA	False	NA	NA	NA	151110457	151077831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151081871_151103205_151103281_151110156_151110236_151110361
16821	chr4	+	2471	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	274	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	197.893085956503	108	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCAGATTATACTTGAGC	5322	False	NA	NA	False	NA	NA	NA	89055632	89099320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095121_89097716
16822	chr6	-	2987	16	NNC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_14	93.1108300181384	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCCCTGCTTAAGCTTG	NA	False	NA	NA	False	NA	NA	NA	39354609	39312921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39351928_39352101_39354552
16823	chr14	+	2993	11	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	491.412952617246	1	91	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATAGGCAGTTGGAAG	9015	False	NA	NA	False	NA	NA	NA	55777846	55787276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55786112_55786196
16824	chr4	-	2477	13	NIC	ENSMUSG00000028693.16	novel	2118	14	NA	NA	1	-29	intron_retention	FALSE	canonical	3	48	junction_8	358.677509129797	4	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTATAAAAATAAATATGCT	NA	False	NA	NA	False	NA	NA	NA	116484693	116458277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
16825	chr7	+	827	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	47	19	0	0	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	8344	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGCCTCTTTCCTCAT	1955	False	NA	NA	False	NA	NA	NA	43093553	43107205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
16826	chr2	+	2605	12	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-3296	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	174.006506955372	1	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGATATTTTACTCATTT	NA	False	NA	NA	False	NA	NA	NA	174261888	174269292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174261939_174262116_174262157_174263528_174263613_174264359_174264468_174264844_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
16827	chrX	-	3109	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	25	117	-4	-102	multi-exon	FALSE	canonical	3	241	junction_8	283.721694623446	1	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTATTTAGCACAAAGTG	NA	False	NA	NA	False	NA	NA	NA	23231296	23085626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
16829	chr3	+	3091	10	ISM	ENSMUSG00000027774.17	ENSMUST00000161009.7	1971	14	30	5730	30	-5730	5prime_fragment	FALSE	canonical	0	0	junction_6	184.912859023105	30	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTCATTGCCCCTTCT	NA	False	NA	NA	False	NA	NA	NA	67337478	67360408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631
16831	chr17	+	4107	11	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1063.11864342603	1	189	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCATTTTTCCATTTTC	NA	False	NA	NA	False	NA	NA	NA	88282479	88298316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282834_88287618_88287819_88290872_88291044_88291873_88293674_88293824_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
16832	chr11	+	1676	4	NNC	ENSMUSG00000020849.14	novel	599	5	NA	NA	8	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5309.21264302805	170	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3043	False	NA	NA	False	NA	NA	NA	75623746	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646483_75655445
16833	chr7	+	2119	5	ISM	ENSMUSG00000066979.7	ENSMUST00000207736.2	2128	9	11	6837	0	-3138	5prime_fragment	FALSE	canonical	3	44	junction_4	660.626028854449	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCAATCATTTCATATT	NA	False	NA	NA	False	NA	NA	NA	131162119	131166787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131164092_131165062
16834	chrX	+	1856	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	755.657869889893	2	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTTTGGGTGTACTGTC	NA	False	NA	NA	False	NA	NA	NA	139357373	139376886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917_139375999_139376092
16838	chr12	+	5416	44	NNC	ENSMUSG00000020576.11	novel	7234	52	NA	NA	-7	-36722	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_40	11.4673567318908	3	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTCTTTGACACTTTG	NA	False	NA	NA	False	NA	NA	NA	13319126	13532424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645_13371840_13372856_13373115_13374269_13374396_13378336_13378489_13380617_13380759_13381024_13381104_13385831_13385937_13386274_13386412_13402783_13402868_13406824_13406979_13410931_13411118_13412442_13412617_13424696_13424831_13427434_13427498_13429647_13429771_13440925_13441029_13443303_13443534_13455374_13455488_13458194_13458309_13463528_13463643_13464784_13464943_13465645_13465733_13482897_13483063_13491467_13491582_13491862_13491948_13503053_13503131_13503485_13503624_13510825_13511086_13519841_13520072_13524127_13524239_13532386
16839	chr1	+	3163	6	NNC	ENSMUSG00000026456.19	novel	563	7	NA	NA	104	-66	intron_retention	FALSE	canonical	2	10	junction_5	164.44135732838	30	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTGCCTGTACAAAGTG	8322	False	NA	NA	False	NA	NA	NA	134333869	134339408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134336970
16840	chr11	+	2563	11	NIC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	-6	0	intron_retention	FALSE	canonical	3	682	junction_1	162.27646163261	4	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1418	False	NA	NA	False	NA	NA	NA	120675124	120679923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120676040_120676525_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
16841	chr17	+	4031	8	NNC	ENSMUSG00000116564.2	novel	1596	8	NA	NA	-11	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	153.516867384104	7	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAACAAATTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	17594559	17608013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17594933_17597980_17598120_17598744_17599739_17599786_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
16842	chr10	+	3339	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	-14	0	-14	0	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	34	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	NA	False	NA	NA	NA	82694998	82733546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
16843	chr2	+	2394	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	122	1156	-3	-140	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	2	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGCACATGTGGTGTAGG	NA	False	NA	NA	False	NA	NA	NA	34662103	34666403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
16844	chr4	+	2800	13	NNC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	23	1147	intron_retention	FALSE	canonical	0	0	junction_3	113.401541974623	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAAAAAATCCTAATTTA	NA	False	NA	NA	False	NA	NA	NA	62327056	62342715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62327139_62327811_62327990_62329932_62330122_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334292_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340760_62340839_62340959_62341454
16845	chr2	-	3887	13	NIC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-149	-20	intron_retention	FALSE	canonical	3	947	junction_8	67.7845852683337	30	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAATTTATTACTAAGT	3793	False	NA	NA	False	NA	NA	NA	3514000	3489906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
16846	chr6	-	2965	9	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	-16	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	1355.61535266277	244	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGTCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39397412	39374743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032_39397061_39397151
16847	chr9	-	4046	6	FSM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	113	4	113	-4	multi-exon	FALSE	canonical	3	171	junction_5	13.1969693490589	4	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCTGTGCCTTACCAT	5864	False	NA	NA	False	NA	NA	NA	108455825	108449513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299_108453782_108455692
16849	chr2	-	2368	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	132	42	5	-34	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	7	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGTGAATAAAGCAAGGATC	3764	False	NA	NA	False	NA	NA	NA	154734723	154713371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
16850	chr13	-	3142	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18683	3077	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.5915020879982	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	74739470	74724399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74725525_74725953_74727579_74728971_74729033_74729232_74729360_74730309_74730434_74739390
16851	chr2	-	3592	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	5	0	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	291	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCAGTACTGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	11782388	11747383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
16853	chr3	+	4219	8	NNC	ENSMUSG00000037730.14	novel	5555	8	NA	NA	20	-490	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	68.0498016911444	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATGTTAAATTCCATAGG	8812	False	NA	NA	False	NA	NA	NA	30656812	30673532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30656845_30657652_30657703_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
16854	chr11	-	3683	12	NNC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	11213	-7	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_11	106.911564597232	10	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	NA	False	NA	NA	False	NA	NA	NA	4754027	4715851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4753952
16855	chr10	+	3307	17	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	0	-8	intron_retention	FALSE	canonical	3	135	junction_2	28.4033448734476	4	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGCCAGCCTGCACGT	9093	False	NA	NA	False	NA	NA	NA	41352309	41361059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980
16856	chr6	-	2755	22	NIC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	-4	-205	combination_of_known_splicesites	FALSE	canonical	0	0	junction_18	51.0178484618668	2	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTTGAGTGGGCTTGAA	NA	False	NA	NA	False	NA	NA	NA	30873687	30748615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30867535_30867608_30871781_30871863_30872476_30872530_30873595
16857	chr17	+	4521	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	238.512492720347	1	182	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTCGGATTGGTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	32255416	32281830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266710_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
16861	chr6	+	3745	12	FSM	ENSMUSG00000071337.12	ENSMUST00000095752.9	3130	12	-6	-609	3	-433	multi-exon	FALSE	canonical	3	30	junction_4	49.110770393011	32	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTGTGGGGTCTTCTTG	9769	False	NA	NA	False	NA	NA	NA	86381288	86409776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
16863	chr11	-	3050	18	NNC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	50	-2	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	116.723877882034	799	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAATAATGAAAATGTCTC	1180	False	NA	NA	False	NA	NA	NA	107080128	107057490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062493_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
16864	chr11	+	1963	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-9	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	368.738992302746	4	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAGACCAATTGTTAAT	NA	False	NA	NA	False	NA	NA	NA	115455341	115474726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455349_115456020_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472871_115473910_115474039_115474151_115474254_115474546
16865	chr2	-	3589	17	NNC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	-18	-6	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	79.205207175728	269	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATAGCTTCCTATTCCA	NA	False	NA	NA	False	NA	NA	NA	91540882	91504969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512455_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
16866	chr18	+	2681	5	NNC	ENSMUSG00000057561.11	novel	2865	3	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_3	805.494878940891	2	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	46730790	46743278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731707_46731768_46740570_46740687_46740775_46740820_46740894
16867	chrX	-	3481	13	Intergenic	novelGene_3890	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTCCACCCACCTCAAG	NA	False	NA	NA	False	NA	NA	NA	20384857	20291574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_20291650_20295260_20295369_20301447_20301536_20326752_20326812_20328350_20328429_20345750_20345914_20355942_20356131_20360394_20360608_20365662_20365833_20368634_20368747_20377253_20377729_20378973_20379091_20383222
16868	chr4	-	2993	23	NNC	ENSMUSG00000028559.18	novel	2871	24	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	119.235694431015	2	40	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	109059359	108918851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929497_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
16869	chrX	+	1814	9	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	923.658545878833	43	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-49	True	NA	NA	NA	74139675	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140502_74146108_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
16870	chr11	-	3385	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	243	299	243	-4	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	18	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCAGTTCTGGTTCTGTCT	9701	False	NA	NA	False	NA	NA	NA	6150172	6055989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
16871	chr17	-	2165	6	Intergenic	novelGene_46	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	27	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTCCGGAAGAAACACCC	NA	False	NA	NA	False	NA	NA	NA	17426627	17399585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17399712_17399975_17400131_17422956_17423081_17423322_17423385_17424677_17425815_17426066
16872	chr19	+	1867	7	Antisense	novelGene_ENSMUSG00000024640.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTTCGCTGTCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	15882493	15902395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_15883514_15884291_15884497_15886596_15886754_15895590_15895776_15896818_15896891_15898300_15898358_15902224
16873	chr2	+	2522	13	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	8	-5	intron_retention	FALSE	canonical	0	0	junction_12	195.18680510959	12	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGTGTTCTTAGTCTGTT	642	False	NA	NA	False	NA	NA	NA	31462811	31507525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31506190
16875	chr4	-	3785	1	ISM	ENSMUSG00000066324.3	ENSMUST00000084949.3	6543	5	27018	69	27018	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCCTGAATATACTTTGA	NA	False	NA	NA	False	NA	NA	NA	4766337	4762552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_4762600_4766300
16876	chr4	-	3968	9	FSM	ENSMUSG00000040928.16	ENSMUST00000106059.8	4084	9	113	3	3	-3	multi-exon	FALSE	canonical	3	25	junction_6	66.0793793478722	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCATATGTACTGTGGCC	1116	False	NA	NA	False	NA	NA	NA	129083407	129041800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076124_129076326_129077393_129077511_129083334
16878	chr6	+	2976	16	NNC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	8	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	148.607611589118	6	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATATCCAGTGTAATCTA	NA	False	NA	NA	False	NA	NA	NA	40302428	40373690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40342900_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
16879	chr16	-	2111	7	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	697	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	950.530685108762	4	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGCCAAGTAGAACTGGAA	NA	False	NA	NA	False	NA	NA	NA	22084676	22064500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066002_22071492_22071546_22073157_22073321_22073733_22073868_22077614_22078012_22084490
16880	chr7	-	1376	1	Genic_Genomic	ENSMUSG00000012777.15	novel	NA	NA	NA	NA	4895	1213	mono-exon	FALSE	NA	NA	NA	NA	NA	14	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGTCTGGCAGCCAGCC	NA	False	NA	NA	False	NA	NA	NA	43901734	43900358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_43900400_43901700
16881	chr18	+	4041	21	NNC	ENSMUSG00000024260.15	novel	4030	21	NA	NA	-12	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	46.7519785677569	262	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGCAGTTTGCCTCTTT	6793	False	NA	NA	False	NA	NA	NA	31767411	31856116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815059_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844785_31848393_31848498_31853709_31853824_31855224
16882	chr11	+	3989	32	NIC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	-37	-17459	combination_of_known_junctions	TRUE	canonical	3	42	junction_29	25.0112149662804	96	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCCACATTCCCAGAGTC	NA	False	NA	NA	False	NA	NA	NA	84070619	84184768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_84070753_84083904_84083952_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114078_84115269_84115352_84116959_84117059_84119745_84119853_84122476_84122588_84129651_84129862_84134103_84134275_84136032_84136195_84136519_84136684_84140239_84140391_84142057_84142162_84147509_84147592_84148001_84148148_84150148_84150300_84151449_84151585_84152335_84152483_84153221_84153411_84154097_84154199_84154864_84154954_84161142_84161268_84167359_84167474_84168621_84168736_84169691_84169782_84171217_84171337_84181113_84181138_84183716_84183861_84184722
16883	chr4	+	2415	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	182	3	-1	-3	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	142	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTGTCTCATGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	130640617	130663449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
16884	chr15	-	2628	11	ISM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	536	-1	0	1	intron_retention	FALSE	canonical	3	377	junction_10	35.4526444711816	61	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCAACTACACTGTCTTC	8666	False	NA	NA	False	NA	NA	NA	76501048	76496589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074
16885	chr8	+	1600	11	ISM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	74	5974	74	-2506	5prime_fragment	FALSE	canonical	3	1402	junction_7	116.851230203195	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGTCTCGGGCTAGGCTG	NA	False	NA	NA	False	NA	NA	NA	75836325	75848342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165
16886	chr2	-	2081	8	NIC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-22	-1019	intron_retention	FALSE	canonical	3	11792	junction_6	877.543138075658	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGAAGTCGATCTG	3714	False	NA	NA	False	NA	NA	NA	154734773	154714356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
16887	chr2	+	1805	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	708.167463969359	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119002_130119395_130119545_130119768_130119891_130120075_130120211_130120816
16888	chr10	-	2458	14	NIC	ENSMUSG00000020076.8	novel	2535	15	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	72.6091098983914	399	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8138	False	NA	NA	False	NA	NA	NA	62486965	62451793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62452296_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
16889	chr14	+	2720	18	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	67	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	174.134796452748	1	56	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32044042	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045872_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069466
16891	chr17	-	1966	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	23	-1	-4	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	12	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	45906473	45896127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
16892	chrX	+	2088	3	NIC	ENSMUSG00000008682.14	novel	762	6	NA	NA	-1	-7	intron_retention	FALSE	canonical	3	2920	junction_1	3341.5	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTTATGTTTTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	73314461	73316734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73314481_73314584_73315325_73315405
16893	chr16	+	2984	4	FSM	ENSMUSG00000022679.14	ENSMUST00000128757.8	3089	4	1	104	1	-104	multi-exon	FALSE	canonical	2	10	junction_1	87.8179936004006	2145	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGTATTAGAGGCAGG	NA	False	NA	NA	False	NA	NA	NA	13721025	13767379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13721145_13762529_13762601_13764421_13764452_13764615
16894	chrX	-	2880	2	NIC	ENSMUSG00000031167.17	novel	1274	6	NA	NA	162	-2	intron_retention	FALSE	canonical	3	1120	junction_1	0	3	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATACTGATAATGCTTTT	6741	False	NA	NA	False	NA	NA	NA	8011756	8008601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8010919_8011193
16895	chr6	+	1694	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	40008	1404	-10	64	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	3	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTCATCTAGAGGGTGT	5716	False	NA	NA	False	NA	NA	NA	83254364	83280522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
16897	chr3	-	3821	16	NNC	ENSMUSG00000039735.17	novel	5372	16	NA	NA	25	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.6611261120195	2	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAGTTAAGATGTGTACT	NA	False	NA	NA	False	NA	NA	NA	122413339	122332377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_122333578_122333725_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
16898	chr15	+	4357	9	FSM	ENSMUSG00000000532.12	ENSMUST00000000544.12	4418	9	53	8	53	-8	multi-exon	FALSE	canonical	3	11	junction_8	3.66571957465379	134	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAACTGCTCTGATCCCG	NA	False	NA	NA	False	NA	NA	NA	101072000	101111557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101072117_101091812_101092053_101092689_101092939_101096664_101096896_101099858_101100027_101100818_101100976_101102333_101102459_101106960_101107092_101108617
16899	chr10	-	2775	14	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	73	-1867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	183.771532973312	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTATCTTGGTGTGTCGAT	NA	False	NA	-82	True	NA	NA	NA	62437987	62417896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418387_62420371_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
16900	chr6	-	1470	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	13	-84	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4141.94084940864	4	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAAGTTCCTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	87828028	87820147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820331_87820424_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
16901	chr2	+	3742	11	FSM	ENSMUSG00000027425.19	ENSMUST00000028911.15	3801	11	30	29	14	-28	multi-exon	FALSE	canonical	1	121	junction_10	80.6347319707829	231	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCACAGCCAGGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	144210932	144249567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_144211078_144215110_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
16902	chrUn_JH584304v1	-	2291	6	Intergenic	novelGene_4659	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	95	junction_1	356.22318846476	9	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	59016	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53833_54318_54480_54720_54868_55111_55249_55464_55702_58563
16903	chrX	+	3207	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	34	353	14	-348	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTTCTTTATTTAAGA	NA	False	NA	NA	False	NA	NA	NA	163202816	163216559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
16904	chr11	-	4038	16	FSM	ENSMUSG00000061306.17	ENSMUST00000045402.14	4554	16	20	496	-4	-4	multi-exon	FALSE	canonical	3	392	junction_1	66.2227218474814	322	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAGTCTCGAGTCGAGT	5016	False	NA	NA	False	NA	NA	NA	120042152	119995281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
16905	chr3	-	3779	1	Intergenic	novelGene_3168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	68	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATACAAGTGACCCTAAAAA	5434	False	NA	NA	False	NA	NA	NA	98575118	98571339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_98571300_98575100
16906	chr19	-	2937	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	4	1857	4	-1857	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	779	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAACCCAGGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	43741435	43723549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
16907	chr2	-	1242	7	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.372677996249965	298	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCCGTTTCTTCTGTCGCT	6845	False	NA	NA	False	NA	NA	NA	162925599	162916610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162916717_162917547_162917696_162919706_162919807_162921511_162921627_162922636_162922742_162924468_162924618_162925080
16910	chr5	+	4755	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	14	0	intron_retention	FALSE	canonical	3	110	junction_9	229.420784136424	402	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGAAGTTTGGTCATTA	NA	False	NA	NA	False	NA	NA	NA	74696177	74759451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
16911	chr9	-	3970	14	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	5	-167	intron_retention	FALSE	non_canonical	3	187	junction_5	20.9665837259219	4	72	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTTATGGAGACTTTCC	6383	False	NA	NA	False	NA	NA	NA	44272962	44259391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44266448_44266995_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
16912	chr17	+	1591	2	ISM	ENSMUSG00000025737.6	ENSMUST00000160349.2	3139	8	3404	-3	2391	3	intron_retention	FALSE	canonical	3	125	junction_1	0	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	26046026	26047698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26046128_26046208
16913	chr3	-	2254	17	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	-29	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.901358470903	29	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAGTATGATATTTTTC	NA	False	NA	NA	False	NA	NA	NA	95763122	95737932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738143_95738249_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
16914	chr11	-	4727	14	NNC	ENSMUSG00000018412.17	novel	5510	14	NA	NA	-392	-2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_13	66.4934930304057	4	58	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTCAGGCTTTTCT	7777	False	NA	NA	False	NA	NA	NA	104333509	104224328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104314747_104316120_104333451
16915	chr13	+	1948	10	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	600.349733463034	2	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588127	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610050_3614565_3614685_3614858_3614914_3614995
16916	chr4	-	2729	7	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	804.421876601796	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACATATGTTCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	141325535	141303390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308407_141310364_141310553_141317324_141317437_141322534_141322791_141323205_141323260_141325393
16918	chr4	-	242	1	Intergenic	novelGene_1969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTCTTAACCGCTGAGCC	NA	False	NA	NA	False	NA	NA	NA	132034182	132033940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_132033900_132034200
16919	chr17	+	3859	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232354.2	1041	5	49	-2867	1	-4	multi-exon	FALSE	canonical	3	24	junction_4	15.2807067899361	74	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTTGTTTTTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	21229261	21249119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21245722
16920	chr16	-	2123	8	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	695	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	923.41197386074	1	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	22084676	22064502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065528_22067847_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078010_22084490
16921	chr14	+	4190	42	NIC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	34	21	combination_of_known_splicesites	FALSE	canonical	3	21	junction_41	225.688816734038	1	133	21	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTTGAATAATTAGACCT	NA	False	NA	NA	False	NA	NA	NA	47886806	47973771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47886847_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47971611_47971724_47973556
16922	chr12	+	3704	8	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	intron_retention	FALSE	non_canonical	0	0	junction_3	188.310858932343	120	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109506983_109509582_109509733_109509909_109511027_109514147_109515807_109515913_109516013_109516087_109516246_109524670_109524755_109537824
16924	chr10	-	3792	23	Antisense	novelGene_ENSMUSG00000119470.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	29	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAAGCCGCCGCTCTCTC	4658	False	NA	NA	False	NA	NA	NA	24783113	24745910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_24746044_24746350_24746383_24746560_24746648_24749368_24749491_24750462_24750578_24751491_24751587_24752835_24752944_24754290_24754356_24755569_24755681_24758448_24758546_24764295_24764497_24767014_24767159_24768409_24768557_24769510_24769757_24771601_24771747_24773082_24773257_24774306_24774470_24776591_24776717_24777898_24778107_24778190_24778369_24779550_24780374_24781717_24781957_24783079
16925	chr3	+	4077	10	NNC	ENSMUSG00000036632.10	novel	1471	10	NA	NA	9	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.643946475266	6	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTCCAGGCTCAAGGTG	NA	False	NA	NA	False	NA	NA	NA	54643002	54657204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54643512_54643982_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
16926	chr15	-	4183	17	NIC	ENSMUSG00000039828.8	novel	2126	18	NA	NA	0	3	intron_retention	FALSE	canonical	3	158	junction_1	89.7106459680232	13	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATTTTGTCCTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	8128675	7902539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
16927	chr17	-	2172	15	Antisense	novelGene_ENSMUSG00000007564.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	56	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGATCGGGCGGGGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	21186087	21165716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21165844_21171602_21171694_21174874_21174975_21176047_21176287_21176970_21177131_21177228_21177377_21178990_21179094_21179199_21179270_21179647_21179784_21180725_21180902_21181214_21181275_21181845_21182002_21182835_21182976_21185497_21185590_21185713
16928	chr3	+	2312	12	NIC	ENSMUSG00000063052.10	novel	2450	13	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	239.919235721985	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGGTATTGGTATAGTG	NA	False	NA	NA	False	NA	NA	NA	157742336	157772718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_157742514_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
16929	chr11	-	2090	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1599.6441510536	3	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	8969	False	NA	NA	False	NA	NA	NA	106680005	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676356_106677796_106677901_106679098_106679286_106679841
16930	chr19	-	2962	7	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	-15	intron_retention	FALSE	non_canonical	0	0	junction_6	551.526190573838	5	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCACTCTCCAACCATAGC	6564	False	NA	NA	False	NA	NA	NA	4062668	4057517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4061429_4062547
16931	chr8	-	3557	12	ISM	ENSMUSG00000031974.9	ENSMUST00000075578.7	4306	13	11979	0	11979	0	3prime_fragment	TRUE	canonical	3	39	junction_3	9.89030746833392	94	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCTGTGTGTTATGA	NA	False	NA	NA	False	NA	NA	NA	124697882	124679197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_124681315_124681461_124681497_124682511_124682556_124685237_124685419_124686948_124687029_124688734_124688945_124689731_124689828_124691729_124691866_124693204_124693352_124694739_124694875_124696458_124696662_124697709
16932	chr11	+	5387	16	NIC	ENSMUSG00000059474.14	novel	5245	16	NA	NA	-36	-7	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	45.102648357817	114	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTATTTTATCAATTTT	NA	False	NA	NA	False	NA	NA	NA	93776641	93837804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_93776889_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834487
16933	chr11	-	3512	9	NNC	ENSMUSG00000025162.19	novel	3675	9	NA	NA	83	-3	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_5	196.81272824693	38	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTCCCTCCCCTTTGTG	859	False	NA	NA	False	NA	NA	NA	120882073	120852577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863297_120863791_120864021_120864646_120864796_120874058_120874170_120881760
16934	chr13	-	2548	10	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	343	0	-17	0	3prime_fragment	FALSE	canonical	3	1428	junction_1	93.7092956902645	353	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	NA	False	NA	NA	NA	47259323	47238257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
16935	chr8	+	2597	23	NNC	ENSMUSG00000032939.15	novel	2928	23	NA	NA	5	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	251.620959854334	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAAACATTCTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	94941238	95041480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95031946_95032000_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
16937	chr4	+	2323	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	31	2582	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	117.792103266037	5	90	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147576904	147600525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592102_147595209_147595337_147596801_147597042_147597375_147597627_147597959_147598432_147599353_147599761_147599862
16938	chr3	-	3955	16	NNC	ENSMUSG00000039735.17	novel	5372	16	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	23.6611261120195	232	34	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTACTTATCTTTTAC	NA	False	NA	NA	False	NA	NA	NA	122413370	122332367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351609_122351663_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
16939	chr8	-	2391	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	8	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1180.97642464003	1	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTATGGTACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	26337714	26306909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318878_26321294_26321377_26322667_26322764_26323778_26323875_26324915_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
16940	chr13	-	3749	21	FSM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	-10	8	-10	-8	multi-exon	FALSE	canonical	3	56	junction_14	27.7961777947976	129	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATTATGTTTCATAGTC	NA	False	NA	NA	False	NA	NA	NA	77283602	77191214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
16941	chr11	+	2541	23	NIC	ENSMUSG00000059439.16	novel	2769	24	NA	NA	-2	-19047	combination_of_known_junctions	FALSE	canonical	1	5	junction_3	32.3955409644625	208	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	3476	False	NA	NA	False	NA	NA	NA	85243990	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_85244060_85245713_85245802_85250450_85250506_85251849_85251889_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
16943	chr11	-	3094	10	Antisense	novelGene_ENSMUSG00000086442.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	62	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACTCGCACCGGAAGTCG	NA	False	NA	NA	False	NA	NA	NA	107388520	107370353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_107370509_107376373_107376411_107376553_107376663_107377239_107377346_107379791_107379897_107382604_107382755_107382840_107382976_107384226_107384340_107385453_107385629_107386511
16944	chrX	+	5166	17	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	0	-11	intron_retention	FALSE	canonical	3	205	junction_11	30.8170001784729	85	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGACCACCACACCTAGC	NA	False	NA	NA	False	NA	NA	NA	20570172	20586765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20580161_20580252_20580971_20581091_20581176_20581266_20581362_20582985_20584044_20584232_20584512_20584592_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
16946	chr1	+	2256	10	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-25	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	255.298711510194	21	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGTTTCTTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	4878093	4916974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4915855_4916069
16947	chr4	+	2523	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	317	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	258.262325110397	1200	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGATCAGATTATACTTG	5365	False	NA	NA	False	NA	NA	NA	89055675	89099317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074636_89074851_89089364_89089466_89090381_89090622_89095039_89095163_89097704
16948	chr16	-	3650	7	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	1	1475	intron_retention	FALSE	canonical	0	0	junction_1	178.593968418745	159	76	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGCAGCAGAACCACAGG	NA	False	NA	NA	False	NA	NA	NA	5073795	5060540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_5063250_5065340_5065464_5066428_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
16949	chr3	+	3212	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	-17	-1814	15	-11	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	1	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATAATGACTAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	95836572	95854691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
16950	chr11	-	860	5	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTCTATGGCAACCGCT	NA	False	NA	NA	False	NA	NA	NA	75650256	75623710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642906_75646398_75646507_75647642_75647847_75650114
16951	chr3	-	1767	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	545.731596305924	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCACATGGTGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	98247240	98220491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241928_98247017
16952	chrX	-	2815	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	38	263	7	1	multi-exon	FALSE	canonical	3	87	junction_5	11.3947356265953	206	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTTGAGATTTGGGAGA	9918	False	NA	NA	False	NA	NA	NA	7940961	7927672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940782
16953	chr6	+	2034	6	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	542.165436006391	4	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2949	False	NA	NA	False	NA	NA	NA	122285963	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293353
16954	chr6	-	2350	14	NIC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-1	0	intron_retention	FALSE	canonical	3	776	junction_13	63.1617628318247	2	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	-2	True	NA	NA	False	NA	NA	NA	30509749	30482413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30482985_30487373_30487448_30489291_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
16956	chr5	+	3025	16	NNC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	-25	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	72.4156520834182	4	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACACGTACCAGAAGAGT	1841	False	NA	NA	False	NA	NA	NA	120651182	120672079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_120651398_120656626_120656878_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
16957	chr11	+	3749	17	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	3537	-19	intron_retention	FALSE	canonical	0	0	junction_4	49.7215685090485	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTATTTAATGTAGTCC	1204	False	NA	NA	False	NA	NA	NA	78196017	78213264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78196147_78203940_78204016_78204173_78204267_78204338_78204544_78204645_78205083_78205168_78205283_78205530_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210899_78211157_78211279_78211386_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
16959	chr6	-	2331	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	138	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1625.2682855455	3	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGGTCAGGTTGGGAG	8623	False	NA	NA	False	NA	NA	NA	145021772	144944903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945976_144950076_144950152_144953341_144953483_144955787_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
16960	chr1	+	3529	13	FSM	ENSMUSG00000026554.16	ENSMUST00000074144.11	4656	13	1104	23	334	-23	multi-exon	FALSE	canonical	3	475	junction_9	39.6410106105057	1	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTAAAGCTTTTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	171976848	172023933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
16961	chr17	-	2668	5	NNC	ENSMUSG00000078546.9	novel	2221	5	NA	NA	-73	663	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	6.01560470775798	73	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGTTGTTTCCATTTTCC	NA	False	NA	NA	False	NA	NA	NA	22128693	22097887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22100076_22100938_22101060_22106287_22106340_22127029_22127178_22128534
16963	chr7	+	3288	11	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	1	-8	intron_retention	FALSE	canonical	3	6	junction_1	29.1856128940271	90	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACAGTATGTGTTGCC	NA	False	NA	NA	False	NA	NA	NA	101714718	101732961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_101715012_101719032_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
16964	chr17	-	4051	11	NIC	ENSMUSG00000024335.21	novel	4483	13	NA	NA	-842	-2	intron_retention	FALSE	canonical	3	318	junction_9	52.8988657723396	456	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTGAGTTAGTTTTCT	9363	False	NA	NA	False	NA	NA	NA	34338305	34331005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579
16966	chrX	-	2716	3	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	18	-1	intron_retention	FALSE	canonical	3	11043	junction_2	2981	8	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232924	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101229267_101230001_101231978_101232903
16967	chr11	-	570	4	ISM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	2151	4232	2151	-716	internal_fragment	FALSE	canonical	3	16996	junction_2	1094.57125040914	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAGATACCCCAGCCAAAAA	NA	False	NA	NA	False	NA	NA	NA	33110921	33106741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33107049_33109933_33109996_33110333_33110441_33110827
16968	chr1	-	1779	5	ISM	ENSMUSG00000026198.16	ENSMUST00000159219.8	3625	10	-99	4225	7	965	5prime_fragment	FALSE	canonical	3	123	junction_4	5.7227615711298	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATGAAACTATAGATAGA	NA	False	NA	NA	False	NA	NA	NA	75157029	75153588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213
16970	chr5	-	2287	16	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	27	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCCCGGAACGTCGTCC	NA	False	NA	NA	False	NA	NA	NA	33829530	33815941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816069_33818562_33818728_33818861_33818994_33820961_33821073_33821161_33821245_33821608_33822198_33824034_33824086_33824401_33824510_33825304_33825396_33825475_33825579_33826004_33826082_33826160_33826205_33826820_33826990_33828745_33828855_33829008_33829130_33829323
16971	chr1	+	2218	13	Antisense	novelGene_ENSMUSG00000064823.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	72	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACGCACACAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	86278223	86285947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86278416_86278530_86278761_86279092_86279216_86279919_86280039_86280228_86280354_86280845_86281002_86281452_86281578_86282741_86282866_86283772_86283903_86284086_86284180_86284277_86284464_86284678_86285173_86285826
16972	chr5	+	2600	8	ISM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	45	5	-7	-5	intron_retention	FALSE	canonical	3	507	junction_4	40.9997511192048	1068	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTGTGAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	33492897	33530635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957
16973	chr10	+	2493	17	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-4	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	257.0400017507	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171912	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218400_21223239_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
16974	chr5	-	3947	10	Antisense	novelGene_ENSMUSG00000051674.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	13	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTTAGCTCGCAACAGA	NA	False	NA	NA	False	NA	NA	NA	73718133	73648438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_73648534_73668226_73668297_73668467_73668508_73677456_73677572_73679992_73680085_73688843_73688924_73691953_73692040_73712699_73712804_73714593_73714700_73714974
16975	chrX	+	4224	14	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	24	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	232.139699828974	1	108	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTTGAAGCTGTTACCT	NA	False	NA	NA	False	NA	NA	NA	158315687	158376053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158350362_158350738_158350796_158350914_158351011_158357940_158358094_158374327_158374354_158375066
16976	chr7	+	4109	31	NNC	ENSMUSG00000030447.16	novel	6440	31	NA	NA	-15	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	112.370221440854	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTCATCCTGTACGAGCA	NA	False	NA	NA	False	NA	NA	NA	55491938	55580179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576263_55577962_55578083_55579745
16977	chr19	-	2360	11	NNC	ENSMUSG00000024826.16	novel	3314	11	NA	NA	30	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	231.247399985384	1765	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTGGACAGTTTGTCT	1302	False	NA	NA	False	NA	NA	NA	5962869	5947412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952713_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
16978	chr5	-	2981	14	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-33	-1	intron_retention	FALSE	canonical	0	0	junction_4	586.143741079866	2	115	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCTTGTTAATAACTC	2287	False	NA	-122	True	NA	NA	NA	138170113	138162862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138165029_138165307_138165702_138165808_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
16979	chr2	-	5119	4	FSM	ENSMUSG00000026788.14	ENSMUST00000113156.2	1828	4	-56	-3235	-2	0	multi-exon	FALSE	canonical	3	37	junction_1	10.6770782520313	135	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTGTTTTCACTCAT	NA	False	NA	NA	False	NA	NA	NA	33358573	33340298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_33345136_33352277_33352370_33354925_33354987_33358444
16981	chr13	-	2573	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-12	384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.897430087446	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCATGTGTCTAGGCAT	6796	False	NA	NA	False	NA	NA	NA	62860579	62846835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848493_62848576_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62860451
16982	chr5	+	4151	23	ISM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	63	1579	4	314	intron_retention	FALSE	canonical	3	302	junction_8	45.5453638177285	13	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAACAGATTTACTACTCT	NA	False	NA	NA	False	NA	NA	NA	121536061	121578893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397
16983	chr9	-	4344	18	FSM	ENSMUSG00000036737.13	ENSMUST00000040853.11	4647	18	297	6	192	-6	multi-exon	FALSE	canonical	3	230	junction_10	22.0306486733564	245	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAATGCTTTCATTTATT	5869	False	NA	NA	False	NA	NA	NA	119151196	119067503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_119070283_119070776_119070842_119071785_119071855_119073721_119073775_119074607_119074673_119076047_119076195_119080254_119080291_119083828_119083952_119088267_119088334_119089115_119089165_119093815_119093950_119096208_119096311_119097745_119097856_119101994_119102051_119113611_119113754_119123480_119123590_119133870_119133984_119151070
16984	chr6	-	4875	2	FSM	ENSMUSG00000030346.17	ENSMUST00000123837.2	711	2	-1211	-2953	-1049	-10	multi-exon	FALSE	canonical	3	253	junction_1	0	4	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTAAAATGTGCATGCC	NA	False	NA	NA	False	NA	NA	NA	126906282	126900387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_126903481_126904500
16985	chrX	+	2413	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1106.63695944063	4	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473309	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100480754_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
16987	chr8	-	3778	23	NNC	ENSMUSG00000000759.15	novel	3797	22	NA	NA	0	-1	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_19	48.7379779624449	1	98	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTTTCATGTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	12722123	12664279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12708479_12708589_12711299_12711368_12713931_12714040_12721954
16988	chr16	-	2811	5	NNC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	21	413	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	169.812396485062	25	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGCTTTTGTGAATTTAGA	NA	False	NA	NA	False	NA	NA	NA	10810964	10776725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10778916_10781120_10781278_10784288_10784514_10793290_10793475_10810909
16989	chr2	-	5094	19	NNC	ENSMUSG00000025815.14	novel	3852	18	NA	NA	4	27	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	23.4721400393039	1	115	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTACTCAAATTTCTT	NA	False	NA	NA	False	NA	NA	NA	5947550	5900898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5902340_5902855_5903624_5904721_5904808_5907139_5907310_5907782_5907862_5908770_5908936_5910506_5910666_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947324
16990	chr6	+	2282	15	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	542.297592260401	62	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	71808353	71852241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300_71851774_71852161
16991	chr17	+	2183	7	NNC	ENSMUSG00000024188.17	novel	2670	9	NA	NA	1114	-12	intron_retention	FALSE	canonical	0	0	junction_6	217.451143938127	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTACTTTTATTATATG	NA	False	NA	NA	False	NA	NA	NA	26473309	26499681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498908
16992	chr4	+	2934	15	ISM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	5445	1263	5445	0	3prime_fragment	FALSE	canonical	3	463	junction_7	96.1621982243903	2	83	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	5359	False	NA	NA	False	NA	NA	NA	40976350	41012608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
16993	chr14	+	4333	23	NNC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	77.9725661651594	1	142	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCCCTCTCATTACTCGC	NA	False	NA	NA	False	NA	NA	NA	20724403	20744917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732843_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
16994	chr2	+	2805	19	NIC	ENSMUSG00000002455.15	novel	3054	21	NA	NA	-11	1	combination_of_known_splicesites	FALSE	canonical	1	19	junction_17	96.7842994358277	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	2537	False	NA	NA	False	NA	NA	NA	181243154	181297454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181296628_181296756_181297214
16996	chr8	+	3091	25	NNC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_21	186.108316728607	603	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	108163017	108283845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108282292_108282473_108283092_108283190_108283343_108283417_108283518
16997	chrX	+	3162	21	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	-9842	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	186.341051569427	1	109	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150809600	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820494_150820605_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
16998	chr3	+	2413	10	NNC	ENSMUSG00000028180.19	novel	2924	10	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	345.245520080714	3	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTATCAAGTGTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	157240015	157253972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246755_157247487_157247507_157248788_157248882_157250600_157250760_157252311
17001	chr7	+	2475	10	Antisense	novelGene_ENSMUSG00000108494.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGGGACTCTAGGCTG	1422	False	NA	NA	False	NA	NA	NA	79744600	79765066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_79744952_79745368_79745460_79745544_79745644_79745769_79745883_79747550_79748663_79748745_79748909_79750492_79750657_79752869_79752960_79760660_79760798_79764911
17002	chr1	+	2480	22	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	7	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	194.496244476972	2	31	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTATATCATTTCTTGTG	329	False	NA	NA	False	NA	NA	NA	72346592	72434101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358188_72358266_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393374_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
17003	chr9	-	1642	11	NIC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-3	2	combination_of_known_splicesites	FALSE	canonical	3	133	junction_10	2078.88549227705	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996696	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89996588
17005	chr6	-	2090	11	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1682.35336359518	3651	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9286	False	NA	NA	False	NA	NA	NA	128415623	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407515_128407624_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
17006	chr7	+	3744	20	NNC	ENSMUSG00000030852.19	novel	3906	21	NA	NA	-2489	-11	intron_retention	FALSE	canonical	1	1	junction_3	122.76908938116	11	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAAATAAAGTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	130176678	130366482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130176713_130179167_130179247_130191699_130191757_130203566_130203668_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
17007	chrX	+	4936	31	Fusion	ENSMUSG00000031010.18_ENSMUSG00000087424.2	novel	523	5	NA	NA	-170	6725	multi-exon	FALSE	canonical	0	0	junction_3	312.210984574356	1	167	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGAAGTTCTTCTAAATA	NA	False	NA	NA	False	NA	NA	NA	12908083	13006746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_12908349_12909795_12909896_12919473_12919590_12920389_12920480_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973424_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982847_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001313_13002683_13002810_13003846_13004014_13006347_13006457_13006648
17008	chr1	-	3932	16	Antisense	novelGene_ENSMUSG00000026483.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGACTCCAGGGAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	151595073	151446650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_151446810_151447191_151447334_151512152_151512283_151517175_151517309_151520623_151520738_151525026_151525194_151565268_151565389_151571442_151571544_151571873_151572037_151575857_151576039_151579442_151579602_151581724_151581847_151584845_151584956_151591410_151591521_151592977_151593247_151593321
17010	chr3	+	3280	3	NNC	ENSMUSG00000001418.14	novel	861	4	NA	NA	4	46	intron_retention	FALSE	non_canonical	0	0	junction_1	503.5	3	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTCCAGTCTCTCTTA	4036	False	NA	NA	False	NA	NA	NA	88232370	88235934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88234403_88234597_88235421_88235509
17011	chr9	+	3085	16	Antisense	novelGene_ENSMUSG00000032127.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCTCCGGAAGCGAAATCA	4386	False	NA	NA	False	NA	NA	NA	44259431	44272943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44259882_44260199_44260424_44263892_44264000_44264188_44264407_44264509_44264649_44265128_44265295_44265398_44265591_44265707_44265853_44266260_44266448_44266995_44267148_44267524_44267725_44269363_44269614_44270434_44270597_44270903_44271049_44271138_44271285_44272741
17013	chr2	+	3720	2	Antisense	novelGene_ENSMUSG00000027547.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAACAAAAAACACTAG	4797	False	NA	NA	False	NA	NA	NA	168595255	168607269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_168598723_168607016
17014	chr17	-	2628	4	ISM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	7	31	7	-27	intron_retention	FALSE	canonical	3	600	junction_2	25.7293606605372	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGACCTTGGATCTT	NA	False	NA	NA	False	NA	NA	NA	34250587	34247273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063
17015	chr10	-	3133	11	ISM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	465	24	-1	-4	3prime_fragment	FALSE	canonical	3	473	junction_6	30.8506077735918	486	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAAGAGATTTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	117546198	117524803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850
17019	chr11	+	3439	5	FSM	ENSMUSG00000020453.18	ENSMUST00000110043.8	3702	5	263	0	-183	0	multi-exon	TRUE	canonical	0	0	junction_4	207.771960331513	532	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6269	False	NA	NA	False	NA	NA	NA	3240255	3259083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256222_3256361_3257647
17020	chr3	+	4029	7	NNC	ENSMUSG00000019710.14	novel	1226	6	NA	NA	1492	6454	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTACAAATCCTTAGAACAA	NA	False	NA	NA	False	NA	NA	NA	87830407	87837433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_87831219_87831649_87831838_87832250_87832739_87834037_87834181_87834326_87834425_87834869_87834968_87835230
17021	chr2	+	2859	16	NNC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	2	-953	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	136.66595121764	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTCCTGATATGTGGT	NA	False	NA	NA	False	NA	NA	NA	29825441	29849430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830198_29832612_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
17022	chr4	-	2831	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	16	-5	16	5	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	576	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTCTGTGTGATTATC	NA	False	NA	NA	False	NA	NA	NA	117039820	117016830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
17023	chr16	+	3703	19	NNC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_5	75.5276296431059	3	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTTGCCTCTCTGCTC	NA	False	NA	NA	False	NA	NA	NA	20367414	20379568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20367496_20367715_20367864_20367984_20368852_20368951_20369075_20369170_20369446_20369611_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
17024	chr8	+	2217	10	NIC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	33	1	intron_retention	FALSE	canonical	3	45	junction_5	745.871368779786	28	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCATGGCTCCAGCCCCAT	NA	False	NA	NA	False	NA	NA	NA	84441933	84449905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
17025	chr11	-	3923	28	Antisense	novelGene_ENSMUSG00002075861.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGAGAGAGAGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	84801441	84771246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_84771335_84771611_84772073_84773409_84773551_84776024_84776164_84776492_84776644_84778636_84778767_84778876_84778992_84782899_84783033_84784147_84784218_84785372_84785477_84786091_84786187_84786300_84786379_84787944_84788037_84788373_84788545_84790200_84790274_84791022_84791142_84791297_84791412_84791665_84791851_84792179_84792328_84792923_84793038_84793984_84794053_84796364_84796467_84797574_84797693_84798055_84798228_84798330_84798459_84799040_84799132_84800079_84800378_84801216
17026	chr19	-	2942	8	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	74	-8	intron_retention	FALSE	canonical	0	0	junction_3	298.433460946062	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAAATGGAGTTTGTGA	8511	False	NA	NA	False	NA	NA	NA	43512850	43488198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488997_43491346_43491490_43492960_43493761_43494757_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
17027	chr5	+	2048	10	Antisense	novelGene_ENSMUSG00000001467.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTTAGTCTGGCCCGG	NA	False	NA	NA	False	NA	NA	NA	4132552	4154422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_4133307_4136462_4136636_4137782_4137874_4141844_4142037_4142380_4142507_4149122_4149299_4150144_4150272_4151177_4151355_4152927_4153031_4154293
17029	chr13	-	2436	11	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-15	-94	intron_retention	FALSE	canonical	3	14	junction_10	724.044169923355	4	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGATTGAATCTTTCTATC	NA	False	NA	NA	False	NA	NA	NA	97334818	97312932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97313098_97313304_97313655_97314387_97314563_97315851_97315925_97317589_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97334533
17031	chr8	+	4120	19	NNC	ENSMUSG00000031622.17	novel	4115	19	NA	NA	-2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	284.747169638759	61	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTCAGGGTCCTTCGT	NA	False	NA	NA	False	NA	NA	NA	73449910	73484828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73468101_73468192_73468437_73468557_73471084_73471294_73471521_73471639_73473037_73473277_73474312_73474497_73476346_73476897_73477063_73477234_73479794_73479969_73480172_73480266_73483100_73483196_73483475_73483681_73483802
17032	chr8	-	1764	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-77	0	at_least_one_novel_splicesite	FALSE	canonical	3	230	junction_1	1663.49968064319	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760094	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749173_43749261_43749574_43753664_43753743_43757512_43757597_43759877
17033	chr19	+	2048	8	NIC	ENSMUSG00000024740.11	novel	1589	11	NA	NA	-259	-10	intron_retention	FALSE	canonical	3	3022	junction_3	187.809499661932	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTAAGAAGAAACTCTTAT	NA	False	NA	NA	False	NA	NA	NA	10602151	10607173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
17034	chr13	+	3073	12	NNC	ENSMUSG00000114633.2	novel	523	2	NA	NA	-5328	-94	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGGCATCTGAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	55678479	55684343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55678547_55678995_55679105_55679190_55679263_55679347_55679739_55679847_55679922_55680159_55680298_55680818_55680975_55681764_55683433_55683542_55683618_55683698_55683864_55684111_55684220_55684293
17036	chr2	+	3263	4	Antisense	novelGene_ENSMUSG00000027551.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGACGGATGTACAACCAG	615	False	NA	NA	False	NA	NA	NA	168779247	168797199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_168781952_168782654_168782819_168793464_168793699_168797038
17037	chr17	-	4298	11	FSM	ENSMUSG00000023953.10	ENSMUST00000024749.9	3238	11	-1	-1059	-1	1059	multi-exon	TRUE	canonical	3	10	junction_7	5.44426303552648	136	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTAAAAAACAAAA	7122	False	NA	NA	False	NA	NA	NA	46513572	46481221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
17038	chr17	+	3410	7	NNC	ENSMUSG00000061544.14	novel	640	6	NA	NA	-98	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	71.7017356058338	6	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAAATCTATCAAGGACT	NA	False	NA	NA	False	NA	NA	NA	21949677	21967939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027_21965780_21967004
17039	chr11	-	2105	15	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	558.251557114181	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239123	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191368_75191891_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75239051
17042	chr15	-	3027	2	Antisense	novelGene_ENSMUSG00000042406.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGCACGCCCTAAACCCG	NA	False	NA	NA	False	NA	NA	NA	80143245	80139697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80139887_80140407
17043	chr4	+	3557	6	NIC	ENSMUSG00000028884.15	novel	1813	9	NA	NA	57	-269	intron_retention	FALSE	canonical	3	1317	junction_5	66.4487772648978	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGAAATGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	132496002	132505794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132496098_132497856_132497959_132499151_132499266_132501137_132502445_132503558_132503667_132503963
17045	chr17	+	2254	6	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	47	-2020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1305.35916896462	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCCAGTGGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	13226793	13237001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912_13234221_13235717
17046	chr3	+	3661	7	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-8	-230	intron_retention	FALSE	canonical	3	910	junction_3	55.4466710753074	3	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACCTGACAGTGTTGTGG	NA	False	NA	NA	False	NA	NA	NA	105866815	105874613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105867015_105867268_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105873742_105874478
17049	chr4	+	2160	2	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14335	681	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	0	1	66	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGGATAACAAATGACTATG	NA	False	NA	NA	False	NA	NA	NA	145158974	145178139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145176036
17050	chr14	+	4846	7	NNC	ENSMUSG00000021767.20	novel	535	6	NA	NA	46	-1286	intron_retention	FALSE	canonical	0	0	junction_2	54.3397235505993	45	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCGAAAAAAGGGACACCCA	NA	False	NA	NA	False	NA	NA	NA	21531572	21675508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21531622_21566693_21567571_21637741_21637869_21659821_21659931_21668958_21669075_21669285_21669368_21672022
17051	chr4	-	2986	9	NIC	ENSMUSG00000025413.14	novel	2121	10	NA	NA	-5	444	intron_retention	FALSE	canonical	3	276	junction_3	16.3893067272536	741	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATAGGAGTTGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	106536103	106519008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_106520429_106522852_106522936_106524692_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
17052	chrX	-	2893	22	Intergenic	novelGene_4071	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	80	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGCTCTCTTCATCGC	NA	False	NA	NA	False	NA	NA	NA	143152658	143101053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101113_143102889_143103067_143105024_143105145_143119105_143119458_143120085_143120172_143121959_143122028_143123694_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129735_143130955_143131030_143132281_143132414_143133276_143133525_143134258_143134372_143134766_143134890_143135623_143135762_143136544_143136625_143139789_143139955_143146857_143147109_143152534
17055	chr10	-	3087	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	0	-3	0	3	multi-exon	FALSE	canonical	3	189	junction_4	16.3291151015602	386	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	115198152	115176643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
17056	chr9	-	3257	23	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	15	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	84.1576639213222	1	74	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854003	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836954_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851577_61852676_61852702_61853893
17057	chr17	-	2224	13	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	1453	junction_5	323.049746771126	2264	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906496	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
17058	chr19	-	2043	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	364.551931453728	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGAGACCTTTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	27407236	27367461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397549_27398798_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
17059	chrX	+	2740	1	Antisense	novelGene_ENSMUSG00000083327.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	74	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCGAGAAAAGCCCTGTTA	NA	False	NA	NA	False	NA	NA	NA	103389357	103392097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_103389400_103392100
17060	chr17	-	3692	11	FSM	ENSMUSG00000024037.14	ENSMUST00000171171.9	4154	11	462	0	-6	0	multi-exon	FALSE	canonical	3	400	junction_7	39.3020355706928	585	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACGTTGTCTCTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	31731263	31713295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728742_31728887_31729551_31729621_31731140
17062	chr8	+	3277	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	451	-2	-3	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	1	128	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8824	False	NA	NA	False	NA	NA	NA	120637549	120684296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
17063	chr17	-	3734	13	ISM	ENSMUSG00000024335.21	ENSMUST00000154232.9	4520	14	1080	0	-842	0	3prime_fragment	FALSE	canonical	3	88	junction_10	131.526586877162	559	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	9363	False	NA	NA	False	NA	NA	NA	34338305	34331003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881_34336186_34337579
17064	chrX	+	1704	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1433.90517468904	14	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	NA	NA	NA	105230770	105247305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238070_105238245_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
17065	chr6	-	3058	18	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	198.616390532693	1	91	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6217178	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191303_6217049
17066	chrUn_JH584304v1	-	2115	10	Intergenic	novelGene_4635	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_9	330.146806103356	1	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGATATATTGGCTAAT	NA	False	NA	NA	False	NA	NA	NA	61455	52230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_53833_54318_54480_54720_54868_55111_55702_56985_57152_57410_57500_58563_58836_59591_59774_61381
17067	chr18	+	4430	6	NNC	ENSMUSG00000042439.14	novel	3580	7	NA	NA	149	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	42.3584702273347	2	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCTTCAAGAGAGTTAT	NA	False	NA	NA	False	NA	NA	NA	65717156	65822011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_65717245_65756054_65758406_65815965_65816079_65818595_65818762_65820032_65820283_65820549
17068	chr3	+	3045	13	NNC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.005750071631	452	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	NA	False	NA	NA	NA	89325866	89337322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89326021_89329576_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
17069	chrX	-	4245	13	NNC	ENSMUSG00000031257.15	novel	2563	13	NA	NA	24886	25756	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	88	107	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATAAGGGATGTTTCCC	NA	False	NA	NA	False	NA	NA	NA	132987571	132961413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_132961469_132961690_132961865_132962444_132962580_132963117_132963234_132963339_132963483_132967008_132967128_132970588_132970653_132973880_132974023_132974870_132975045_132975259_132975551_132981071_132981185_132981937_132982064_132984978
17070	chr12	-	4099	19	FSM	ENSMUSG00000052593.17	ENSMUST00000064536.13	4443	19	46	298	7	-4	multi-exon	FALSE	canonical	3	115	junction_17	16.3499537508313	5	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAATTGTCTTAATT	NA	False	NA	NA	False	NA	NA	NA	21423587	21373815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
17071	chrX	+	4072	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	-50	-73	-50	73	multi-exon	FALSE	canonical	3	194	junction_2	9.5	296	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTAGAGAATTTCTGGT	9450	False	NA	NA	False	NA	NA	NA	57075952	57081992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_57077598_57078721_57078886_57079729
17072	chr9	+	2905	22	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	11	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	169.775922749895	5	11	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAAGACTCTTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	98445794	98470428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459105_98459458_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
17073	chr13	+	5162	15	NIC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	22	-2	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	29.2302610878744	2	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCTTGTGATGACCTTT	NA	False	NA	NA	False	NA	NA	NA	52737494	52802816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_52737642_52750993_52751091_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52778743_52778813_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
17074	chr9	+	3557	15	FSM	ENSMUSG00000006932.18	ENSMUST00000007130.15	3623	15	66	0	-9	0	multi-exon	FALSE	canonical	3	499	junction_2	74.0160283248135	1155	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	120762531	120789573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
17075	chr1	+	3269	7	NIC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	9	-10	intron_retention	FALSE	canonical	3	373	junction_6	32.3354810283276	44	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATTTATCACTGTGATG	NA	False	NA	NA	False	NA	NA	NA	191553630	191565152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_191553854_191554258_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248
17076	chr7	-	3281	13	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	73.0792473202132	34	39	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9604	False	NA	NA	False	NA	NA	NA	3218931	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208145_3208211_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
17077	chr7	-	2400	8	NIC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	21	-36	intron_retention	FALSE	canonical	3	1616	junction_3	188.063384885772	43	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGTGCCATATTTAGCTA	NA	False	NA	NA	False	NA	NA	NA	79765031	79744633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79744952_79745368_79745462_79745546_79745884_79747551_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
17078	chr7	+	3327	9	NNC	ENSMUSG00000030965.20	novel	2892	9	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	75.4543529228102	350	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATCATGATACGATATT	NA	False	NA	NA	False	NA	NA	NA	132460977	132486829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480813_132482495_132482611_132484763
17079	chr9	+	3417	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	-892	10	-892	-10	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	642	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGAGTGTCTTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	20926388	20940103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
17082	chr6	-	2777	11	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	-67	-8	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	230.496442488816	152	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTAGCCTCACAGTTC	NA	False	NA	NA	False	NA	NA	NA	95695848	95451130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543992_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
17083	chr7	-	4581	6	FSM	ENSMUSG00000044452.11	ENSMUST00000187282.3	944	6	-11	-3626	8	-5	multi-exon	FALSE	canonical	3	8	junction_4	23.3957261054236	10	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACTTGTTTCTAAGTTT	NA	False	NA	NA	False	NA	NA	NA	35502403	35471772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35500862_35500954_35502258
17084	chr11	+	2116	7	NIC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	-48	3	combination_of_known_splicesites	FALSE	canonical	3	74	junction_6	1050.71521937308	20	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGCTTAAAATTACTTTA	NA	False	NA	NA	False	NA	NA	NA	97206685	97220749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97219307
17085	chr2	-	4044	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	38	-1576	-13	1576	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	812	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAAACATTGCCAAGTAA	NA	False	NA	NA	False	NA	NA	NA	102903820	102849843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
17087	chr15	-	1592	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	3	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2457.88152887807	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601883	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594321_31594479_31594673_31595790_31595990_31597556_31597684_31598145_31598207_31601746
17088	chr8	-	3405	19	NNC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	136.930425245906	3	95	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTCCTCTAGCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	73228962	73214329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73214531_73214807_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
17089	chr18	+	2731	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	503.538545025632	1	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGATGTAATCACTGAT	6432	False	NA	-90	True	NA	NA	NA	77126250	77240824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77167164_77167294_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216749_77217737_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
17091	chr4	-	3278	9	NIC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	1	1	intron_retention	FALSE	canonical	3	1430	junction_5	131.272617098921	50	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCGGTCATCTGCATTC	NA	False	NA	NA	False	NA	NA	NA	124830709	124812256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
17092	chr16	-	1609	10	Antisense	novelGene_ENSMUSG00000065208.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGACAACAACACTGCAGTT	NA	False	NA	NA	False	NA	NA	NA	22932472	22927334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_22927382_22927466_22927600_22927867_22928008_22928732_22928904_22928983_22929092_22929327_22929472_22929873_22930011_22930249_22930342_22930565_22930643_22931912
17093	chr2	-	2443	3	ISM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	108	4	46	-4	intron_retention	FALSE	canonical	3	930	junction_2	7	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACATCCTTGGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	152185844	152179345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_152180608_152181634_152181928_152184956
17094	chr13	+	3469	6	NIC	ENSMUSG00000074794.11	novel	4132	8	NA	NA	1313	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	94.0476474984888	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGGCAGTTTATTTGA	NA	False	NA	NA	False	NA	NA	NA	81035526	81044161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_81035607_81038214_81038318_81038652_81038910_81039180_81039344_81039568_81039762_81041488
17095	chrX	+	3342	4	NNC	ENSMUSG00000015291.11	novel	527	5	NA	NA	3	-3	intron_retention	FALSE	non_canonical	0	0	junction_3	398.870349306082	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAAGCCTGGCTCTTTA	6220	False	NA	NA	False	NA	NA	NA	73348875	73355461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350553_73352501
17096	chr5	+	2897	11	Antisense	novelGene_ENSMUSG00000088712.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGAGCGGAGGGAAATGTC	NA	False	NA	NA	False	NA	NA	NA	92201244	92231320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92202913_92203242_92203364_92204128_92204256_92205825_92205930_92212183_92212365_92213610_92213714_92214350_92214441_92216182_92216357_92218214_92218296_92221016_92221138_92231193
17097	chrX	+	1765	2	FSM	ENSMUSG00000031231.5	ENSMUST00000152398.2	180	2	27	-1612	27	1612	multi-exon	FALSE	canonical	2	5	junction_1	0	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCGAAGTGGCTCAGCGG	NA	False	NA	NA	False	NA	NA	NA	105059348	105061347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105059477_105059710
17098	chr9	+	3785	9	NIC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	1	2	intron_retention	FALSE	canonical	3	392	junction_1	94.856141076896	3	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1164	False	NA	NA	False	NA	NA	NA	108394302	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
17099	chr10	-	2459	11	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-8	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	629.482835349781	6	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATTTGCTCACTGTTGT	5	True	NA	NA	False	NA	NA	NA	128401864	128393646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398780_128399035_128399199_128399445_128399575_128401608
17100	chr17	-	3443	15	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	269.869393959223	1	124	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAAAACGATAATCGAACT	NA	False	NA	NA	False	NA	NA	NA	29226925	29189871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29199342_29199497_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
17102	chr15	-	4109	30	NNC	ENSMUSG00000000555.9	novel	4382	30	NA	NA	227	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.6387681668045	1	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTTGCAGTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	103274948	103252717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_103253780_103254404_103254502_103255007_103255110_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967_103260106_103260441_103260597_103260684_103260741_103260910_103261013_103261342_103261389_103261569_103261762_103262000_103262210_103262473_103262527_103262694_103262752_103264352_103264397_103264503_103264549_103264742_103264869_103265205_103265252_103265346_103265409_103265618_103265740_103265874_103265997_103267485_103267608_103274726
17103	chr16	+	2195	11	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-18	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	316.863077684984	34	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTTATCTTTCATGTG	NA	False	NA	NA	False	NA	NA	NA	38383204	38411667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38405980_38406043_38406591_38406771_38407560_38407720_38408544_38408666_38411273
17104	chr15	+	3457	15	ISM	ENSMUSG00000022272.18	ENSMUST00000022882.12	5880	21	28005	5427	725	-5427	internal_fragment	FALSE	canonical	3	658	junction_13	54.7107421456011	3	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAACCTCCCTGGGGTCA	984	False	NA	NA	False	NA	NA	NA	25781000	25808330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821
17107	chr12	-	3394	13	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	9	-6	combination_of_known_junctions	FALSE	canonical	3	78	junction_12	86.8969296862029	166	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAATATTTGTTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	65219363	65179513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
17108	chr10	-	2981	7	NIC	ENSMUSG00000000901.18	novel	1793	9	NA	NA	0	-12	intron_retention	FALSE	canonical	3	194	junction_2	15.0489940601431	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTTTCTAAGCGCCTG	5083	False	NA	NA	False	NA	NA	NA	75768309	75759068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75759950_75761253_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
17109	chr4	+	3674	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43222	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	133.387555641447	1	185	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533651	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533956_147536170_147536264_147591995_147592102_147595215_147595337_147596801_147597216_147597885
17110	chr2	-	2191	8	NIC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	11	-1	intron_retention	FALSE	canonical	0	0	junction_7	4692.86616220051	2	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTAGTGCTCCATTGCTT	3796	False	NA	NA	False	NA	NA	NA	154734691	154713338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154734609
17111	chr9	-	3367	23	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	3	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	82.8910466807768	1	108	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAGATGCAAACTTGTG	NA	False	NA	NA	False	NA	NA	NA	61854039	61824572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824952_61826178_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842657_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
17112	chr3	-	3781	16	Fusion	ENSMUSG00000106365.2_ENSMUSG00000039735.17	novel	5372	16	NA	NA	-74	-1	multi-exon	FALSE	canonical	0	0	junction_1	29.6445610525776	6	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTACTTATCTTTTA	NA	False	NA	NA	False	NA	NA	NA	122423386	122332368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_122333578_122333725_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122423274
17113	chr1	+	2394	20	ISM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	3023	-1	3023	1	3prime_fragment	FALSE	canonical	3	464	junction_4	70.2682631695438	4	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	3345	False	NA	NA	False	NA	NA	NA	72349608	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
17114	chr10	+	4328	10	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	30238	492	26641	-491	3prime_fragment	FALSE	canonical	3	377	junction_7	76.2405225844538	6	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTTGATTGTAGAAATGG	NA	False	NA	NA	False	NA	NA	NA	127958889	127964680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
17115	chr11	+	3445	7	NNC	ENSMUSG00000038366.16	novel	758	3	NA	NA	26	-9	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	223.899344944702	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCGGACTAGGCTTCT	NA	False	NA	NA	False	NA	NA	NA	97697161	97729581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97697374_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
17116	chr5	+	2627	9	NNC	ENSMUSG00000014956.16	novel	2347	9	NA	NA	26	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	450.194055380566	1	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGTCTGAGTGATTATTC	3100	False	NA	NA	False	NA	NA	NA	32616591	32650097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297_32649442_32649601
17117	chr17	+	3464	11	NIC	ENSMUSG00000069135.12	novel	3077	12	NA	NA	-6	-28	intron_retention	TRUE	canonical	3	299	junction_5	40.0356091498556	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAAAATGTTGGCCGGCA	NA	False	NA	NA	False	NA	NA	NA	8384345	8415279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
17118	chr3	-	1470	1	FSM	ENSMUSG00000089911.5	ENSMUST00000196274.2	3880	1	3820	-1410	3820	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTTTTCTTTTTAAAAA	2434	False	NA	NA	False	NA	NA	NA	116426302	116424832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_116424800_116426300
17119	chr7	+	4551	37	NIC	ENSMUSG00000039187.17	novel	4645	38	NA	NA	-2	-3	combination_of_known_splicesites	TRUE	canonical	0	0	junction_27	69.0965284722292	40	41	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTAGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	79042098	79100009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
17120	chr5	+	2794	17	NNC	ENSMUSG00000056310.15	novel	3044	16	NA	NA	12	-410	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	100.072395669335	359	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTACTGGCTTTGTCC	4940	False	NA	NA	False	NA	NA	NA	130285887	130369994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130358050_130358223_130364086_130364255_130369459
17121	chr11	+	4049	5	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	4816	0	intron_retention	FALSE	non_canonical	0	0	junction_2	202.035114522204	1	145	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	NA	False	NA	NA	NA	46029764	46038170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_46029803_46030519_46030605_46030836_46031058_46033745_46033899_46034618
17122	chr3	-	5550	27	FSM	ENSMUSG00000060671.13	ENSMUST00000069805.14	5559	27	-7	16	-7	-8	multi-exon	TRUE	canonical	3	88	junction_26	26.7970677544519	138	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTCTGAGAGGTGAGTAA	3805	False	NA	NA	False	NA	NA	NA	89867943	89846803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604_89864676_89865115_89865189_89865284_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89867591
17123	chr11	+	2083	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-25	-788	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	300.214727575216	13	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATTGGATTCTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	3913949	3929216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927080_3927201_3927625_3927784_3927870_3928033_3928826
17124	chr8	-	3473	6	FSM	ENSMUSG00000031601.17	ENSMUST00000149992.2	2982	6	4	-495	4	-1	multi-exon	FALSE	canonical	3	422	junction_2	73.8495768437437	10	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTGTGACTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	40964341	40945581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055
17126	chr11	+	2981	2	NNC	ENSMUSG00000037857.17	novel	5158	4	NA	NA	16	5222	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	185	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGAGGTGTTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	77577013	77608789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_77577121_77605915
17127	chr16	+	3884	15	ISM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	12071	-5	-432	4	3prime_fragment	FALSE	non_canonical	1	193	junction_2	109.571242316847	1	140	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	93641079	93672965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
17131	chr10	-	1807	11	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	619.27331607296	10	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCAGGGTTCCTATTAC	NA	False	NA	NA	False	NA	NA	NA	127358270	127353189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354712_127355259_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
17132	chr11	+	975	2	Genic_Genomic	ENSMUSG00000081766.4	novel	346	1	NA	NA	-1811	398	multi-exon	FALSE	canonical	0	0	junction_1	0	31	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTTAAAGAAAATCTTCC	NA	False	NA	NA	False	NA	NA	NA	88861671	88864226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_88861820_88863399
17133	chr9	-	2616	9	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	149.754590914603	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTCTGTAATTTTGC	2199	False	NA	NA	False	NA	NA	NA	58157021	58125823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58126012_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156943
17136	chr3	+	2817	6	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	9	-33	intron_retention	FALSE	canonical	3	403	junction_3	38.5538584320688	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAATAAATGAATTAAAA	7061	False	NA	NA	False	NA	NA	NA	108291183	108295462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291602_108291689_108291748_108292285_108293724_108293815_108294053_108294593_108294712_108294914
17138	chr3	+	2987	14	NNC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	164.99119574861	3	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTCGGCCTCTCAACTC	NA	False	NA	NA	False	NA	NA	NA	89325866	89337319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623_89336186_89336328
17139	chr8	-	2602	6	NIC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	31	-4	intron_retention	FALSE	canonical	3	2367	junction_4	177.298166939199	6	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTCTGTGTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	108315059	108307016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
17140	chrX	+	4873	4	Genic_Genomic	ENSMUSG00000083763.2	novel	448	1	NA	NA	-1850	83645	multi-exon	FALSE	non_canonical	0	0	junction_1	0	698	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGTAGATTGCAGCGCAAA	NA	False	NA	NA	False	NA	NA	NA	102269460	102355403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_102273777_102276403_102276545_102277624_102277875_102355237
17141	chr5	+	3441	10	FSM	ENSMUSG00000029466.12	ENSMUST00000119792.2	3599	10	-228	386	-191	-386	multi-exon	FALSE	canonical	3	226	junction_7	31.1071426040332	86	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGTTGCTACTAATGAG	NA	False	NA	NA	False	NA	NA	NA	122560315	122581111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352
17142	chr8	+	2879	24	NNC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	141.674645240317	228	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTATTACCTGTTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	108163023	108283840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282066_108282151_108283092_108283190_108283343_108283417_108283518
17143	chr16	-	4099	10	NNC	ENSMUSG00000003166.21	novel	4045	10	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	172.23741868439	8	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATGGTCAGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	17709557	17658222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17660642_17661835_17662073_17662846_17663058_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
17144	SIRV7	-	2446	5	NNC	SIRV7A	novel	2462	5	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1290.30122452085	1	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147908	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147611
17145	chr4	+	2314	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9	novel	410	4	NA	NA	0	178376	multi-exon	TRUE	non_canonical	0	0	junction_1	6.29868791001389	1	96	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTGGGAAGTCAGAAGATA	NA	False	NA	NA	False	NA	NA	NA	146033881	146393380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146033929_146036297_146036397_146209452_146209576_146253141_146253297_146253796_146253938_146318571_146318579_146391460_146392610_146392787
17146	chr10	+	3450	19	NNC	ENSMUSG00000019978.17	novel	4385	20	NA	NA	26	0	intron_retention	FALSE	non_canonical	0	0	junction_18	86.6105943965771	4	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	25235779	25399417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194_25398713_25399357
17147	chr14	+	2060	12	NIC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	-1	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	504.136066507564	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGATCCAGCTAGGTA	NA	False	NA	NA	False	NA	NA	NA	45567300	45587164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_45567390_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
17148	chr19	-	1197	1	Antisense	novelGene_ENSMUSG00000067608.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCACGATGCAGAAGCGG	NA	False	NA	NA	False	NA	NA	NA	9261869	9260672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_9260700_9261900
17149	chr5	-	2623	20	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	102.917092738958	2	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGGCCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	30359962	30324427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331632_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
17150	chrX	+	4557	18	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	-8	-251	intron_retention	FALSE	canonical	3	205	junction_12	31.3257248609236	3	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAACAGTGTGGCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	20570190	20586525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580971_20581091_20581176_20581266_20581362_20582985_20584044_20584232_20584512_20584592_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
17151	chr13	-	1510	1	NIC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-215	-1061	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACTTGGTGTTGAGATCA	NA	False	NA	NA	False	NA	NA	NA	100918756	100917246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100917200_100918800
17152	chr11	-	2429	19	NNC	ENSMUSG00000020929.15	novel	2889	27	NA	NA	364	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	461.836136832049	1	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTCTGCCTTGGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	102756431	102729304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732069_102732563_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742739_102746009_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395
17153	chr3	+	2423	14	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	280.669423777844	6	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATTGGTATAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742336	157772721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771953
17155	chr3	+	5063	4	NIC	ENSMUSG00000047213.15	novel	5102	5	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_1	192.77620876723	120	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	16237389	16271201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_16237685_16243641_16243728_16257989_16259589_16268118
17156	chr7	-	2616	9	NIC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	2548	junction_5	193.487685331651	38	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875293	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
17158	chr16	+	3012	9	NIC	ENSMUSG00000022841.16	novel	2937	12	NA	NA	-4	-138	intron_retention	FALSE	canonical	3	317	junction_4	818.607163113053	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTAATGGGGCCCGCAG	1420	False	NA	NA	False	NA	NA	NA	20354294	20362668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359564_20359724_20359861_20359959_20360617_20360705_20360842_20360946_20361501_20362060
17159	chr4	-	2394	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	24	0	-16	0	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	3382	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTCCATGTTGATGTCC	8559	False	NA	NA	False	NA	NA	NA	40757899	40736541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
17160	chr2	+	2476	13	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	4813	1014	151	975	3prime_fragment	FALSE	canonical	3	2736	junction_7	168.068851631969	9	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	NA	NA	NA	162901419	162925594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
17161	chr4	+	2347	12	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	1	-359	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	475.625955543615	7	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGTGAGCTGCATCATC	856	False	NA	NA	False	NA	NA	NA	129083695	129113041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107857_129108959_129109213_129110470_129110613_129112223
17162	chr1	-	2908	13	Antisense	novelGene_ENSMUSG00000026439.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGTATCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	132432398	132399374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_132399806_132412447_132412656_132417324_132417466_132418158_132418322_132420288_132420399_132421550_132421670_132421755_132421913_132422007_132422080_132422594_132422710_132423940_132424012_132424534_132424766_132425666_132425858_132431499
17163	chr2	-	3580	10	NNC	ENSMUSG00000026779.7	novel	1201	7	NA	NA	-10	-9374	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	46.3896540189728	37	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTCTTAAATCAGTGTT	NA	False	NA	NA	False	NA	NA	NA	23045919	23014991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_23016302_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
17164	chr18	+	3917	12	NNC	ENSMUSG00000019143.16	novel	3336	13	NA	NA	-6	176	intron_retention	FALSE	non_canonical	0	0	junction_4	38.5355905045867	2	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGGACCTGAGTTCATT	NA	False	NA	NA	False	NA	NA	NA	36916315	36924923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919548_36919585_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
17165	chr10	+	4460	24	ISM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	-88	3	-6	-3	intron_retention	FALSE	canonical	3	265	junction_7	39.2621454845877	3	97	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGATACCAGTAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	63079601	63153650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478
17166	chr2	-	2408	2	Genic_Genomic	ENSMUSG00000083287.5	novel	684	1	NA	NA	-55	1756	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53586871	53584376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_53586320_53586406
17167	chr6	-	2397	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	146	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1230.39642392198	1	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8631	False	NA	NA	False	NA	NA	NA	145021764	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993035_144993090_145021614
17168	chr2	+	3042	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	0	intron_retention	FALSE	canonical	1	2	junction_2	94.4141242585246	1	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGTTGTATGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	130266273	130285654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279720_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282949_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
17169	chrX	+	3829	7	NNC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	61.7236223463558	2	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATGACCCTTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	134739796	134745474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134740012_134740461_134740622_134741139_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
17170	chr8	-	3597	24	ISM	ENSMUSG00000033732.11	ENSMUST00000042012.7	4525	26	3990	461	2271	-461	3prime_fragment	FALSE	canonical	3	597	junction_23	104.672357656962	1	127	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCACCCCTGCATTGTG	NA	False	NA	NA	False	NA	NA	NA	111569418	111537331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539697_111540254_111540468_111541161_111541288_111542534_111542692_111542786_111542993_111544175_111544351_111547338_111547494_111548099_111548223_111550006_111550151_111550796_111550953_111552133_111552290_111552726_111552879_111558115_111558189_111560411_111560508_111562180_111562347_111563923_111564028_111564843_111564982_111566503_111566617_111567741_111567884_111568402_111568576_111569319
17171	chr19	+	2081	10	Antisense	novelGene_ENSMUSG00000025190.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1426	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGCGGTGCGGGGTCCG	NA	False	NA	NA	False	NA	NA	NA	43488190	43512938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_43488999_43491346_43491489_43492959_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496431_43504117_43504306_43509112_43509236_43512776
17172	chr5	+	2614	6	NNC	ENSMUSG00000029581.15	novel	2157	6	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1109.30194266485	1517	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCGTGTGTGTCTCAGG	NA	False	NA	NA	False	NA	NA	NA	142946110	142958938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142946812_142946857_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
17173	chr16	-	2691	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	63	4	27	-1	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	15	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACCATTGGCTCCTCATT	6293	False	NA	NA	False	NA	NA	NA	38370557	38345502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
17176	chr14	-	2603	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	78	10	-12	-10	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	19	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	4773	False	NA	NA	False	NA	NA	NA	54754904	54744653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
17177	chr15	+	3353	22	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	79.4654191108756	829	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775627	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57778128_57778203_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
17178	chr11	+	1582	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-283	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	2	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAAAATGCCAAATATA	3038	False	NA	NA	False	NA	NA	NA	75623741	75656388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655535_75655722
17179	chr5	+	3441	8	ISM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	7229	-2	-2816	2	3prime_fragment	FALSE	canonical	3	64	junction_3	11.7941528231716	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGGGCGCGGTGTCTTCT	3063	False	NA	NA	False	NA	NA	NA	142457037	142464467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
17180	chr11	-	2251	12	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.14991914915214	2	62	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACCGCCACCAGCGC	NA	False	NA	NA	False	NA	NA	NA	80287051	80274190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274319_80276725_80276854_80278625_80278765_80279801_80279970_80280078_80280153_80280597_80280648_80282156_80282225_80282657_80282817_80283907_80284003_80285111_80285355_80285924_80286087_80286214
17182	chr15	-	3969	6	NNC	ENSMUSG00000048307.9	novel	2509	5	NA	NA	1	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	148.781719307178	5	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATCCTTCGTCATCGGC	NA	False	NA	NA	False	NA	NA	NA	36496934	36477823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36479620_36484126_36484636_36484685_36485334_36485436_36486274_36496022_36496140_36496872
17183	chr2	+	4469	16	NIC	ENSMUSG00000039463.15	novel	4521	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	non_canonical	2	23	junction_6	29.1803586909643	163	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTGTGTCACGTGTT	NA	False	NA	NA	False	NA	NA	NA	167263648	167318920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
17184	chr6	-	3785	14	NIC	ENSMUSG00000005069.13	novel	3139	16	NA	NA	-6	-1	intron_retention	FALSE	canonical	3	96	junction_13	11.860630514986	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGACTGACGTGGGTAGG	NA	False	NA	NA	False	NA	NA	NA	124392032	124373791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
17185	chr12	-	2742	9	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-11	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	836.883047011349	1	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTCTGTCACTGTCT	NA	False	NA	NA	False	NA	NA	NA	108860074	108825964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832286_108841039_108841223_108841591_108841712_108846968_108847065_108848620_108848835_108854301_108854475_108859994
17186	chr1	-	2361	11	NNC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	-32	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	756.829974300701	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGATGGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	125363250	125320646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125363131
17187	chr7	-	3638	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	2	3	intron_retention	FALSE	non_canonical	0	0	junction_1	110.728898165244	3	102	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTACTGCTGTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	42155147	42122806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123345_42124222_42126108_42126528_42126639_42137893_42137975_42138858_42139701_42150781_42150850_42155033
17188	chr17	+	4177	26	NIC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	31	64	intron_retention	FALSE	canonical	3	130	junction_21	18.6193877450361	2	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTCCGTGTTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	66430638	66458448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
17189	chr2	-	3506	1	FSM	ENSMUSG00000097052.4	ENSMUST00000181621.4	139	1	-2259	-1108	-2259	1108	mono-exon	FALSE	NA	NA	NA	NA	NA	73	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTGATGGTTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	26530256	26526750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26526800_26530300
17190	chr13	-	3023	7	NIC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-13	24	intron_retention	FALSE	canonical	0	0	junction_2	1394.78179296978	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGACTTCTCATTTTACA	NA	False	NA	NA	False	NA	NA	NA	100923007	100916092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100916294_100916529_100916641_100917665_100917903_100918132_100920156_100921964_100922127_100922240_100922412_100922889
17191	chr5	-	3137	19	NIC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	10	1	intron_retention	FALSE	non_canonical	0	0	junction_3	191.325848350173	63	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTGTGTGTTAACTGTG	8275	False	NA	NA	False	NA	NA	NA	137305918	137293985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
17192	chr8	-	3008	19	Antisense	novelGene_ENSMUSG00000081745.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCGCCAACCCCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	69281058	69246633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69246802_69247264_69247333_69249369_69249472_69250408_69250556_69254974_69255045_69255532_69255674_69257460_69257637_69260112_69260282_69261025_69261154_69263224_69263383_69264558_69264644_69266215_69266371_69266908_69267015_69271937_69272018_69273304_69273470_69274808_69274903_69276841_69276906_69279923_69280802_69281004
17193	chr4	+	2515	13	NIC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	5	1143	combination_of_known_splicesites	FALSE	canonical	2	10	junction_2	83.5886090059857	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACTGGAAAAAATCCTAA	NA	False	NA	NA	False	NA	NA	NA	62327038	62342711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_62327139_62327811_62327990_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
17194	chr16	+	2924	18	NNC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	7395	81	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	35.5942143737689	1	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTTCAGAAAAACGTGATA	2521	False	NA	NA	False	NA	NA	NA	44175803	44207587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148_44207175_44207217
17195	chr6	-	2737	15	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	34847	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_14	213.797252803029	6	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6139104	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6138998
17196	chr14	-	2485	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-35	738	-15	-6	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	1	81	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTAAGTGGCTATTGCT	NA	False	NA	NA	False	NA	NA	NA	36857244	36842786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
17197	chr8	+	2272	4	Antisense	novelGene_ENSMUSG00000099079.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAAGGGCGACGTTTACGA	NA	False	NA	NA	False	NA	NA	NA	73222262	73229005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_73224071_73224713_73224900_73228455_73228630_73228901
17198	chr17	-	2347	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGTGGTTTCTATGCTC	NA	False	NA	NA	False	NA	NA	NA	28841391	28808565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808821_28808890_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
17200	chr19	-	3299	8	NNC	ENSMUSG00000040451.19	novel	3665	10	NA	NA	-11941	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	75.9142910909187	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATACTGAAAGTATGTGG	4924	False	NA	NA	False	NA	NA	NA	32237350	32100141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32225393_32225437_32237238
17201	chr7	-	4020	6	FSM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	12	0	-1	0	multi-exon	FALSE	canonical	3	107	junction_3	5.45527267879434	277	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTAGGTGTTGGGAGTTT	NA	False	NA	NA	False	NA	NA	NA	110443652	110412737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
17203	chr2	+	3174	11	NIC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	-5	124	intron_retention	FALSE	canonical	3	1110	junction_4	153.534654068715	35	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAGAGCACATGGTATAT	4159	False	NA	NA	False	NA	NA	NA	127429333	127445899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
17204	chr18	+	3957	21	NNC	ENSMUSG00000024260.15	novel	4030	21	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	54.9609861629138	1	101	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGCAGTTTGCCTCTT	6823	False	NA	NA	False	NA	NA	NA	31767441	31856115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_31767543_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800059_31807407_31807550_31810408_31810531_31813421_31813688_31815074_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709_31853824_31855224
17205	chr15	-	3638	16	NIC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-39	-9	intron_retention	FALSE	canonical	3	15	junction_5	5.25948877955094	1	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAAAGCTGTGTCAGCC	6955	False	NA	NA	False	NA	NA	NA	98560814	98543023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
17206	chr5	+	7564	36	FSM	ENSMUSG00000031558.16	ENSMUST00000173107.8	9960	36	174	2222	135	0	multi-exon	TRUE	canonical	3	71	junction_14	20.9676913758442	51	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTCCCACGTTAACCTGT	NA	False	NA	NA	False	NA	NA	NA	48140653	48462853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587_48339660_48343837_48343910_48346770_48346935_48349534_48349674_48368097_48368170_48368624_48368697_48374793_48374866_48377003_48377148_48377258_48377423_48381994_48382146_48387601_48387677_48389253_48389398_48392679_48392824_48394597_48394765_48395717_48395851_48399890_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414224_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440729_48440861_48453750_48453906_48459607_48459897_48460094_48460307_48461341
17207	chr5	-	2262	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	47	529	-12	-529	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	6	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTAGTTAAATGACT	6811	False	NA	NA	False	NA	NA	NA	148989803	148984040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
17208	chr4	+	2994	14	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-4	-9	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_7	74.1739519503241	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGACTAGCCTTGTTTGCGT	NA	False	NA	NA	False	NA	NA	NA	99603908	99651688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641229_99641429_99650107
17209	chr7	-	2128	15	NNC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	46	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	387.551444906324	3	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGGTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	143102783	143067320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143077970_143080952_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102763
17210	chr5	-	2336	9	NIC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	-3	-1	combination_of_known_splicesites	FALSE	canonical	2	32	junction_5	306.610909786328	1257	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAACTACCGTAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	32942986	32893653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32897967_32898134_32922116_32922293_32931739_32931811_32942892
17211	chr7	+	3035	9	NNC	ENSMUSG00000030965.20	novel	2892	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	76.2084928009996	364	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	132460977	132486840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473535_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
17212	chr15	+	3588	15	NNC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	-13352	-239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	221.096998290482	1	68	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATGACTTACTTGTGTT	73	False	NA	NA	False	NA	NA	NA	12146353	12185530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162308_12166230_12166373_12170901_12171000_12171841_12171941_12180707_12180820_12180928_12181027_12184044
17213	chr9	-	3324	24	NIC	ENSMUSG00000032580.13	novel	2986	24	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	16	junction_19	168.013794554734	1	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGGTTTCCTGTGTCTTT	9715	False	NA	NA	False	NA	NA	NA	107648185	107617699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647750
17214	chr19	-	2090	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	17	1	17	-1	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	4	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3780	False	NA	NA	False	NA	NA	NA	7017318	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
17215	chr7	-	4557	8	NNC	ENSMUSG00000030741.16	novel	3251	10	NA	NA	-4	-22	intron_retention	FALSE	canonical	2	3	junction_4	164.583828897902	1	136	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAATAAAATTTGTAATCA	NA	False	NA	NA	False	NA	NA	NA	125976626	125969260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125971008_125971129_125971320_125971583_125974376_125975845_125975912_125976008
17216	chr19	-	2022	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-56	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1087.72606845658	1	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGCCATTCATTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	15902350	15882497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883475_15884318_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
17218	chr11	+	2736	8	NIC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	-2	752	intron_retention	FALSE	canonical	3	226	junction_5	20.985903918233	344	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017302	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
17219	chr10	+	3723	12	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	31.6193789307593	64	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	NA	NA	NA	103203618	103255236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
17221	chr13	+	4242	21	NIC	ENSMUSG00000021413.10	novel	2572	17	NA	NA	37	-5	intron_retention	FALSE	canonical	2	5	junction_12	72.0184698532259	19	71	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATACCGTCTACTGGCA	NA	False	NA	NA	False	NA	NA	NA	35059523	35090042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083297_35083439_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35086659_35087169_35087257_35087512_35087586_35088026_35088073_35089865
17222	chr8	+	2977	4	Antisense	novelGene_ENSMUSG00000110444.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	48	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGAGAGCACGGCGCCCG	1208	False	NA	NA	False	NA	NA	NA	69823859	69848181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_69826559_69827708_69827770_69827956_69828084_69848091
17223	chr9	+	4303	21	FSM	ENSMUSG00000038535.18	ENSMUST00000183410.8	4200	21	-98	-5	0	5	multi-exon	FALSE	canonical	3	22	junction_19	12.0883208097734	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATTCAGATTCCTGT	NA	False	NA	NA	False	NA	NA	NA	72182187	72271048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
17224	chr1	+	2441	21	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	38	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	154.061643506747	49	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTATATCATTTCTTGTG	360	False	NA	NA	False	NA	NA	NA	72346623	72434101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382227_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
17225	chr18	-	2927	9	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_5	65.9430388668887	37	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	70605554	70585282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70601124_70601589_70602519_70602849_70604743_70605051_70605361
17226	chr2	-	3676	8	Antisense	novelGene_ENSMUSG00000027455.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCGTAGGCTCCGCCCAA	NA	False	NA	NA	False	NA	NA	NA	151353223	151336122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_151336331_151338501_151338598_151342630_151345100_151346030_151346122_151347270_151347382_151348165_151348302_151351425_151351591_151352823
17227	chr16	-	2335	3	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-10117	-407	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	528	5	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTAGAGATTTATTTGT	NA	False	NA	NA	False	NA	NA	NA	22230696	22200472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22202442_22220629_22220682_22230382
17228	chr8	-	4459	27	FSM	ENSMUSG00000037993.9	ENSMUST00000042601.9	4463	27	4	0	4	0	multi-exon	TRUE	canonical	3	61	junction_24	17.2223966609053	159	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGCATTTTAAATCTCC	NA	False	NA	NA	False	NA	NA	NA	110292489	110274642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_110275116_110276405_110276528_110278194_110278291_110278699_110278826_110278988_110279124_110279221_110279378_110279721_110279877_110279976_110280186_110280779_110280893_110281275_110281384_110281544_110281662_110281751_110281863_110282271_110282413_110282651_110282838_110282988_110283176_110283505_110283644_110284829_110284943_110285275_110285384_110285550_110285713_110286169_110286326_110286717_110286795_110286969_110287089_110287199_110287348_110287931_110288040_110288580_110288769_110289075_110289416_110292122
17229	chr5	+	3803	16	FSM	ENSMUSG00000029106.15	ENSMUST00000114338.9	4007	16	191	13	-8	1	multi-exon	FALSE	canonical	3	43	junction_14	162.471932618803	290	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTGTCTAAGGTTGGG	NA	False	NA	NA	False	NA	NA	NA	34731198	34789639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34786479_34786517_34787813
17230	chr16	-	1927	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	580	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	677.96017582156	11	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAAGTGTTGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	22084676	22064617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065022_22065099_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
17231	chr13	-	2638	13	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-3742	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	668.572027200926	5	91	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	2350	False	NA	NA	False	NA	NA	NA	74491617	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479609_74480246_74480414_74481140_74481280_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455
17236	chr11	-	4087	18	NIC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	-15	0	intron_retention	FALSE	canonical	3	54	junction_13	11.7234570996265	159	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTCTTGGGTGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	115824318	115783420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614
17237	chr13	-	7462	7	NNC	ENSMUSG00000063894.16	novel	8805	6	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.76029781788188	45	51	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGATTTTTTTGTAA	6612	False	NA	NA	False	NA	NA	NA	21715229	21697391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_21698186_21699467_21705133_21705955_21706080_21706393_21706486_21709307_21709477_21710688_21711192_21715114
17238	chr3	-	3181	12	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-9	-4	intron_retention	FALSE	canonical	1	2	junction_2	405.441275771441	2	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACTGTGGTGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	157630697	157600063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157609356_157609438_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157625750_157626591_157626674_157630502
17240	chr18	-	7868	9	FSM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	11	30	11	-30	multi-exon	FALSE	canonical	3	22	junction_4	5.699506557589	53	86	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTGAAATAAAATTATAGCA	NA	False	NA	NA	False	NA	NA	NA	84607618	84225855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649_84372817_84450484_84450560_84570994_84571110_84576451_84581172_84607562
17241	chr10	-	2730	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	63	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1599.86092172355	1	108	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	86541310	86526703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530218_86530484_86531340_86531407_86531528_86531582_86531683_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537887_86538772_86538890_86539323_86539464_86540157_86540261_86541170
17242	chrX	-	2770	8	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	32	-10	intron_retention	FALSE	canonical	3	1264	junction_7	76.5594340285736	43	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCAGAACTTGGCCCTG	NA	False	NA	NA	False	NA	NA	NA	72830471	72822578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72825396_72825611_72826323_72830380
17244	chrX	+	3006	22	NNC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	126.344003641787	3	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCTTCCATTTCTACTT	568	False	NA	NA	False	NA	NA	NA	20484034	20517124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20508982_20509070_20510910_20510972_20511103_20511281_20511735_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
17245	chr18	+	5246	8	FSM	ENSMUSG00000024238.16	ENSMUST00000025081.13	5801	8	-1	556	-1	-556	multi-exon	FALSE	canonical	3	32	junction_5	9.45666809339164	90	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGTCGTTCTTTGGAT	426	False	NA	NA	False	NA	NA	NA	5591862	5774911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_5591968_5705042_5705244_5748693_5748856_5758964_5759168_5761327_5761434_5766220_5768026_5770383_5770565_5772428
17246	chr11	+	4583	6	FSM	ENSMUSG00000018377.11	ENSMUST00000018521.11	4583	6	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	9.15641851380768	147	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGACTGTTAATGCCGC	NA	False	NA	NA	False	NA	NA	NA	87959104	87975555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87959260_87963882_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87972223
17247	chr4	+	3792	15	NNC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	23	-35	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	79.9887747226613	26	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTTTAGAGCAAATAAAAC	NA	False	NA	NA	False	NA	NA	NA	62327056	62345192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454_62342093_62343465
17249	chr3	+	2135	17	NNC	ENSMUSG00000027680.16	novel	646	3	NA	NA	-372	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	490.400474102544	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGCTGGCTATAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	34093307	34123475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34093384_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34107002_34107100_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
17250	chr8	+	2542	12	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_4	417.641726328019	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACAAGCTCTGTGTTTC	2100	False	NA	NA	False	NA	NA	NA	13388747	13428440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420171_13420275_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
17251	chr3	+	2287	12	NNC	ENSMUSG00000001416.14	novel	2056	12	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_10	746.554421413624	1	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3846	False	NA	NA	False	NA	NA	NA	88204464	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227787_88228013_88228320
17252	chr4	+	2436	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	313	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	201.206666015268	4	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATGATCAGATTATACTT	5361	False	NA	NA	False	NA	NA	NA	89055671	89099316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089422_89090381_89090622_89095039_89095163_89097704
17253	chr3	+	2851	2	ISM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	843	-3	774	3	3prime_fragment	FALSE	canonical	3	754	junction_1	0	1289	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGTGGTATGGGTCT	7260	False	NA	NA	False	NA	NA	NA	95566941	95570490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_95567320_95568017
17254	chr2	-	3377	17	NNC	ENSMUSG00000074643.13	novel	3441	16	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.424677382368	4	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	155953842	155913764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155915386_155915434_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919757_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
17255	chr14	+	2781	9	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-11	-1889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	229.063719300984	5	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52516591	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52516690_52516844_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529355_52530863
17256	chr1	-	2109	12	NIC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	7	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	2033.24479913835	1	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTAATACTTCCTAGAGG	NA	False	NA	NA	False	NA	NA	NA	86287079	86278211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
17257	chr3	+	2335	9	NNC	ENSMUSG00000000561.15	novel	4286	9	NA	NA	-23	658	intron_retention	FALSE	non_canonical	0	0	junction_1	327.012781669157	2	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTTTCCCTCCCCAGAG	NA	False	NA	NA	False	NA	NA	NA	105866800	105875501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105866955_105867347_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873742_105874478
17258	chr10	+	1697	4	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	21440	-152	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	748.367259810018	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTGTGTTTGTATGG	380	False	NA	NA	False	NA	NA	NA	128195118	128198196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128195169_128195302_128195405_128195837_128196023_128196836
17259	chr13	+	3344	9	FSM	ENSMUSG00000038683.17	ENSMUST00000174551.8	3136	9	-207	-1	7	1	multi-exon	FALSE	canonical	3	605	junction_5	45.5981085134022	8	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATACAGAGCTTAATTA	NA	False	NA	NA	False	NA	NA	NA	41154506	41166484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41164759_41165809_41165934_41166040
17260	chr8	+	2531	7	FSM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	70	0	-34	0	multi-exon	FALSE	canonical	3	221	junction_1	22.2816566310098	508	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	47070395	47092724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
17262	chrX	-	3633	23	NNC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	4	-392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	82.7836970415538	2	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGTGTAATGTGTATTA	NA	False	NA	NA	False	NA	NA	NA	110372798	110298281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330641_110331391_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
17263	chr5	+	4053	22	NNC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	356.03268086128	1	151	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTTGTCTTATCTCT	NA	False	NA	NA	False	NA	NA	NA	139186423	139235592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212627_139215507_139215700_139216527_139216592_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222512_139224582_139224695_139226987_139227243_139227697_139227776_139231083_139231200_139232447_139232616_139233824_139233918_139234172
17264	chr11	-	4060	30	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	93.1904191489945	4	130	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTAAAACAACTAGTTT	NA	False	NA	NA	False	NA	NA	NA	60618089	60604957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607147_60607230_60607367_60607476_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613119_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
17265	chr2	+	3191	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	72	5	-68	1	multi-exon	FALSE	canonical	3	465	junction_18	67.3624112131124	1	83	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTAGTCTGTTTTGTTTGC	565	False	NA	NA	False	NA	NA	NA	31462734	31507533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
17266	chr1	+	5150	12	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-14	2	intron_retention	FALSE	canonical	3	13	junction_4	102.300804226822	1	214	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTATACATGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	132405158	132433399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418216_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132424014_132424536_132424767_132425667_132425746_132431501
17267	chr18	+	4245	23	NIC	ENSMUSG00000024498.17	novel	3526	23	NA	NA	9	39	combination_of_known_junctions	FALSE	canonical	3	14	junction_13	206.472578372613	392	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACTCGTAGACCTGTT	NA	False	NA	NA	False	NA	NA	NA	42644574	42708658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42684174_42684226_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
17270	chr9	-	1014	2	ISM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	18	-332	18	332	intron_retention	FALSE	canonical	3	178157	junction_1	0	287	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGAGGCAGGAGGATAT	NA	False	NA	NA	False	NA	NA	NA	78275441	78274001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78274577_78275002
17271	chr12	+	2431	14	NIC	ENSMUSG00000017843.15	novel	2790	13	NA	NA	40	2	combination_of_known_junctions	FALSE	canonical	3	197	junction_1	321.388242421629	38	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTATTTTCCTATG	NA	False	NA	NA	False	NA	NA	NA	110413780	110538124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_110413820_110414405_110414472_110432282_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
17273	chr13	-	2902	17	NNC	ENSMUSG00000021635.15	novel	2839	17	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_16	50.35979919539	331	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTTGTTCTTCTTATCC	NA	False	NA	NA	False	NA	NA	NA	100787543	100753674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787247
17274	chr18	+	2869	1	NIC	ENSMUSG00000073639.7	novel	6515	7	NA	NA	22092	940	mono-exon	FALSE	NA	NA	NA	NA	NA	7	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACATTTTGTGTCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	6787311	6790180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_6787300_6790200
17275	chr8	+	2768	3	NNC	ENSMUSG00000052446.18	novel	2713	4	NA	NA	14	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	46.5	1	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCCAGTTTGTAGAGACT	NA	False	NA	NA	False	NA	NA	NA	72704948	72724174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719484_72719765_72721742
17276	chr9	-	3217	15	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	11	-166	intron_retention	FALSE	non_canonical	3	20	junction_9	56.8454761899776	299	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTATGGAGACTTTCCA	6389	False	NA	NA	False	NA	NA	NA	44272956	44259390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
17277	chr4	-	2386	8	FSM	ENSMUSG00000028692.15	ENSMUST00000128010.2	2227	8	-160	1	124	-1	multi-exon	FALSE	canonical	3	1447	junction_2	89.468042407582	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACGTTGTGTGCCTGACT	NA	False	NA	NA	False	NA	NA	NA	116508753	116493708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
17278	chr12	+	4239	15	ISM	ENSMUSG00000042700.17	ENSMUST00000053969.7	7488	21	30007	17949	-911	-7127	internal_fragment	FALSE	canonical	3	117	junction_1	19.0532283407322	4	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCCCAGAAGAATTTCAA	NA	False	NA	NA	False	NA	NA	NA	82388129	82480607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462
17279	chr11	-	1893	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	64	258	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCAGACCTTCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	48644477	48642435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48643939_48644010_48644153_48644229
17280	chr17	+	4053	30	FSM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	88	-4	24	4	multi-exon	TRUE	canonical	0	0	junction_12	417.564149877336	461	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGCTCTTGTCTGTGTGGT	9562	False	NA	NA	False	NA	NA	NA	35220050	35235302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
17281	chr16	+	3248	6	FSM	ENSMUSG00000022529.12	ENSMUST00000023176.5	3241	6	2	-9	2	0	multi-exon	FALSE	canonical	3	89	junction_1	57.158026557956	245	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATAAATCTTTATTGG	NA	False	NA	NA	False	NA	NA	NA	3561958	3568654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_3562632_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
17282	chr3	+	1591	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	473	1903	12	-672	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	3	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCAAATGCTTAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	30847496	30873509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
17283	chr11	-	1778	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	549	3	1	-1	multi-exon	FALSE	canonical	3	2240	junction_1	249.671049855795	2460	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTGGTCCTTGGCTTT	5931	False	NA	NA	False	NA	NA	NA	100510445	100473646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
17284	chr2	+	3830	15	NNC	ENSMUSG00000026718.18	novel	5000	14	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	62.6970770402238	316	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTATCTTTGTTTCTTTT	4685	False	NA	NA	False	NA	NA	NA	14078911	14154442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029_14152432_14153595
17285	chr8	-	2801	22	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-17	-4	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	69.7814859566126	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATACAAAACATGAGACTA	NA	False	NA	NA	False	NA	NA	NA	73175321	73094848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
17286	chr5	+	2019	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	463	0	-7	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	1	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	749	False	NA	NA	False	NA	NA	NA	77099616	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
17287	chr12	+	2574	13	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	96.5922127065922	1	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157629	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85166040_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
17288	chr4	+	3776	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	115	6	17	-6	multi-exon	FALSE	canonical	3	161	junction_8	15.5060472074607	267	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCCCATGTTGGCATTT	NA	False	NA	NA	False	NA	NA	NA	141521037	141543281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
17290	chr10	-	2679	17	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	103	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	906.330614948954	1	118	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	86541270	86526703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531500_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
17291	chr5	-	2348	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_11	573.369814236459	1	89	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2259	False	NA	NA	False	NA	NA	NA	138170141	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167514_138167637_138167736_138167821_138167987_138168578_138168659_138169987
17293	chr3	+	3218	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	4	2	4	-2	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	486	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGTGACTGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	66893008	67265726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
17294	chr12	+	2613	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	937	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	76884187	76968186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
17296	chr11	+	3844	16	Antisense	novelGene_ENSMUSG00000020516.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCTAGGCCCCAGACTGG	NA	False	NA	NA	False	NA	NA	NA	86391395	86435600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_86393789_86395091_86395208_86397619_86397725_86402414_86402492_86402649_86402714_86403631_86403740_86404125_86404216_86404371_86404462_86406914_86407018_86408175_86408218_86408407_86408466_86410716_86410865_86423596_86423665_86424849_86424973_86426236_86426286_86435390
17297	chr2	-	3575	13	Antisense	novelGene_ENSMUSG00000081992.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	115	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGACCCGGAACCGTACC	NA	False	NA	NA	False	NA	NA	NA	34514961	34296888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_34297264_34309116_34309276_34322012_34322341_34325142_34325232_34334266_34334417_34387710_34387886_34408684_34408860_34423797_34423907_34453063_34453175_34471203_34471343_34487432_34487573_34509856_34509953_34513432
17298	chr15	-	2126	17	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	23	287	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	803.939633053222	2	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGGAGAAAACAGAGTT	NA	False	NA	NA	False	NA	NA	NA	11399728	11383803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392398_11394464_11394501_11397266_11397348_11399571
17300	chr17	-	2834	13	FSM	ENSMUSG00000024187.16	ENSMUST00000114988.8	3714	13	3	877	2	-8	multi-exon	FALSE	canonical	3	154	junction_12	26.8089951736767	425	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCAGTCTGTCTGGATG	1922	False	NA	NA	False	NA	NA	NA	26463194	26431672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462979
17301	chr16	-	2204	17	Antisense	novelGene_ENSMUSG00000006998.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.726184377413891	1	51	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCGGCCTGCTGCGCGC	NA	False	NA	NA	False	NA	NA	NA	20480486	20470456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20470606_20471002_20471045_20471337_20471531_20473322_20473418_20473565_20473791_20474000_20474162_20474306_20474452_20474628_20474691_20475290_20475439_20475616_20475723_20476229_20476359_20476722_20476810_20478153_20478321_20478433_20478523_20478701_20478850_20479089_20479173_20480311
17302	chr8	+	2454	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	5	-227	5	227	multi-exon	FALSE	canonical	3	1046	junction_1	100.936996902771	2320	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAACCAAACTTCAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	107620287	107649947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
17303	chr16	-	2338	18	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	44	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	288.46324719572	2	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTTCTTAGTCCCCGTG	-17	True	NA	NA	False	NA	NA	NA	3895595	3857854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871210_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
17304	chr13	-	2948	9	NNC	ENSMUSG00000035834.12	novel	3054	8	NA	NA	-22	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	90.9996565927586	162	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAAGATGATTTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	81859097	81821965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81822149_81822215_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
17307	chr4	-	2876	2	FSM	ENSMUSG00000039740.7	ENSMUST00000143104.2	531	2	-321	-2024	35	-37	multi-exon	FALSE	canonical	2	6	junction_1	0	4	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCACCTGTAAGAATATAAT	18	True	NA	NA	False	NA	NA	NA	47474298	47469869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_47472386_47473938
17308	chr11	-	2824	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	29	-850	24	850	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	632	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGCAAGTTTCTTTCCT	5367	False	NA	NA	False	NA	NA	NA	6224841	6219518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
17309	chr11	-	2774	18	NNC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	-845	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	70.7482010971128	11	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	5995	False	NA	NA	False	NA	NA	NA	54854588	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54854470
17310	chr8	+	3273	5	NIC	ENSMUSG00000031562.17	novel	2493	6	NA	NA	2	-19	intron_retention	FALSE	canonical	3	319	junction_1	46.0678846920498	43	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAATCATCCAGCACCA	NA	False	NA	NA	False	NA	NA	NA	48563201	48594679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48591914_48593377
17312	chr18	+	2031	10	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-173	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	267.932873480202	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTGGTGTCTTATT	627	False	NA	NA	False	NA	NA	NA	84952733	84999597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983660_84995491_84995617_84999246
17313	chr19	+	1700	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	290	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2640.43447603273	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTACTGTTTGTCTTG	4503	False	NA	NA	False	NA	NA	NA	41900804	41907096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900997_41904043_41904319_41905081_41905263_41906044
17315	chr15	-	3031	16	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	60.1164055996549	7	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	79212405	79170427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79171096_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
17316	chr10	-	1793	10	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	708.904632357398	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATACATTTTAATG	NA	False	NA	NA	False	NA	NA	NA	93725662	93696791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698283_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
17317	chr12	-	5251	4	ISM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	71	0	20	0	intron_retention	FALSE	canonical	3	171	junction_3	59.2339992459286	18	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTTGTCTTTACTGTA	NA	False	NA	NA	False	NA	NA	NA	71183351	71169947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774
17318	chr11	+	2127	10	NIC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	471	-2	intron_retention	FALSE	canonical	3	581	junction_4	48.5846594698622	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	7072	False	NA	NA	False	NA	NA	NA	102324081	102327631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
17320	chr6	+	3522	12	NIC	ENSMUSG00000108037.3	novel	3181	10	NA	NA	3	2635	combination_of_known_splicesites	FALSE	canonical	3	86	junction_11	21.6306333129814	1123	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGTTGTTTCTCCATCT	7119	False	NA	NA	False	NA	NA	NA	125016810	125031140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452
17321	chr17	-	3411	4	FSM	ENSMUSG00000067430.8	ENSMUST00000087654.5	3407	4	-4	0	-4	0	multi-exon	FALSE	canonical	3	84	junction_1	5.73488351136175	147	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGTTCAAATGAGATTT	2755	False	NA	NA	False	NA	NA	NA	33252380	33235836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33238944_33240431_33240484_33240679_33240807_33252255
17323	chr7	-	2118	7	NIC	ENSMUSG00000025465.14	novel	1557	8	NA	NA	2	2	intron_retention	FALSE	canonical	3	1613	junction_2	102.834278763887	34	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTAACTATTTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	139696333	139685628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139692460_139692848_139693047_139696219
17324	chr14	+	3361	9	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-11	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	523.420719880289	19	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTAATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	8348818	8357578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349025_8349570_8349769_8349846_8350453_8351365_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
17325	chr9	-	2716	12	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	389.630212482732	4	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGCACCTTGTGTTCCT	8715	False	NA	NA	False	NA	NA	NA	31123111	31060857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075928_31089284_31089375_31122918
17326	chr2	-	3602	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	36	9	36	-9	multi-exon	FALSE	canonical	3	78	junction_1	10.5	739	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAAGAGTTGCTGTGGT	8447	False	NA	NA	False	NA	NA	NA	30793273	30779491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30782839_30790878_30790962_30793101
17328	chr13	-	4141	14	NNC	ENSMUSG00000021710.12	novel	4162	13	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	84.3387085001857	567	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGAGCTCACAGTACTTT	NA	False	NA	NA	False	NA	NA	NA	104246141	104159563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209355_104209395_104209531_104245923
17329	chr15	-	1730	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-1	-74	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1833.34978932008	18	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTACTGCTGGTCCTC	NA	False	NA	NA	False	NA	NA	NA	31601951	31591019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593112_31593623_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
17331	chr16	-	3069	17	NIC	ENSMUSG00000022771.18	novel	3088	20	NA	NA	3465	-2	intron_retention	FALSE	canonical	3	631	junction_7	52.0815166349829	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCTGGGTCCAGTTTGA	NA	False	NA	NA	False	NA	NA	NA	16925595	16906516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042
17333	chr19	-	1925	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.574727405454	48	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3762	False	NA	NA	False	NA	NA	NA	7017336	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998154_6998337_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
17334	chr11	+	2744	7	NNC	ENSMUSG00000017801.16	novel	1736	7	NA	NA	766	3179	intron_retention	FALSE	non_canonical	0	0	junction_1	0	117	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACCAAACTCGAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	100981253	100986212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100983285_100983357_100983418_100983549_100983601_100983685_100983835_100984506_100984641_100985761_100985851_100985982
17335	chr5	-	2208	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	31	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963451	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938065_135939374_135940506_135963176
17336	chr2	+	4597	19	FSM	ENSMUSG00000014353.16	ENSMUST00000143398.3	2100	19	13	-2510	13	-12	multi-exon	FALSE	canonical	1	36	junction_11	26.3253621315648	116	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACATTTGGAGATTGTTT	NA	False	NA	NA	False	NA	NA	NA	128660235	128696169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128682651_128682724_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
17337	chr1	-	584	5	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1417	17	-397	-6	3prime_fragment	FALSE	canonical	3	5309	junction_1	708.503484465673	19	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTGGCAAATTGAAATGT	NA	False	NA	NA	False	NA	NA	NA	16173469	16171535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391
17338	chr11	+	1093	2	FSM	ENSMUSG00000020459.15	ENSMUST00000156352.2	697	2	40	-436	30	436	multi-exon	FALSE	canonical	3	177	junction_1	0	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCCAGTGCCATGGCAAA	NA	False	NA	NA	False	NA	NA	NA	29476486	29480664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29476844_29479928
17340	chr18	-	702	1	FSM	ENSMUSG00000052102.16	ENSMUST00000237313.2	2104	1	110	1292	82	-1292	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGACAAGTACTTCACCC	NA	False	NA	NA	False	NA	NA	NA	38471880	38471178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38471200_38471900
17342	chr11	-	2649	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	5	60	at_least_one_novel_splicesite	TRUE	canonical	1	5	junction_13	133.80516613796	520	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATAATGTCCATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	57409438	57373758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57409364
17344	chr10	+	2188	5	NIC	ENSMUSG00000009291.14	novel	2294	6	NA	NA	-8	-5	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	298.935193645713	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTGATTTCTTTGT	1283	False	NA	NA	False	NA	NA	NA	77417545	77434561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_77417762_77423084_77423138_77428679_77428852_77429697_77429745_77432861
17345	chr11	+	2776	12	NNC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-532	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	248.661142192269	1	92	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	6069	False	NA	NA	False	NA	NA	NA	102323078	102327631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326111_102326318_102326534_102326769_102326849_102327069_102327160
17346	chrX	+	4121	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	-32	-82	-14	82	multi-exon	TRUE	canonical	3	148	junction_2	10.5	191	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAATATATTTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	80114289	80141560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_80114767_80127896_80128038_80138057
17347	chr5	+	862	4	ISM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	11859	128	524	0	3prime_fragment	FALSE	canonical	3	832	junction_3	21.4527905462721	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	NA	False	NA	NA	NA	73461993	73471284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_73462028_73463920_73464097_73467616_73467770_73470785
17348	chr11	+	4868	16	Antisense	novelGene_ENSMUSG00000032782.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	116	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAGGCCAACCTCCCT	NA	False	NA	NA	False	NA	NA	NA	69190344	69214570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69191142_69193677_69193795_69193921_69194094_69195086_69195144_69196309_69196456_69198768_69199031_69200175_69200342_69200808_69200927_69202157_69202301_69205541_69205683_69206014_69206252_69209770_69209871_69210178_69210801_69211643_69211814_69212194_69212759_69213514
17349	chr7	+	2248	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	-57	8	-57	-8	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1465	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATCTCTCTCTCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	121758604	121769088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
17350	chr7	-	2348	15	NIC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	20	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	411.600831993764	1	22	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCCTCTGTTGCCCTA	NA	False	NA	NA	False	NA	NA	NA	33867980	33840120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33840892_33842162_33842300_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
17351	chr12	-	4054	15	NNC	ENSMUSG00000051235.11	novel	5268	14	NA	NA	6	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.8993355310596	122	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTGTTCATGTAAGAATG	NA	False	NA	NA	False	NA	NA	NA	11315761	11288938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_11289641_11290830_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
17352	chr14	+	1904	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	22	1291	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2344.52056221878	2	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTGCAGTTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	63359984	63380603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371504_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
17353	chr16	+	1932	8	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGCAGATGTCAAAAGT	5497	False	NA	NA	False	NA	NA	NA	22064508	22073868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065615_22065937_22066016_22067187_22067248_22067801_22067886_22069615_22069730_22071355_22071545_22073156_22073327_22073737
17354	chr4	+	4730	19	NIC	ENSMUSG00000057530.15	novel	4816	20	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	26	junction_1	12.6238310789994	100	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTGTCTGTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	137589547	137692540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137589693_137641078_137641166_137648331_137648474_137653529_137653743_137662571_137662694_137663968_137664116_137664649_137664716_137665934_137666127_137672327_137672471_137673565_137673681_137675854_137675966_137676757_137676857_137677466_137677545_137678808_137678913_137683768_137683880_137684445_137684514_137685309_137685501_137688953_137689050_137690040
17355	chr3	+	1074	10	FSM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	62	36	0	-33	multi-exon	FALSE	canonical	3	49	junction_1	10.4880884817015	373	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATCAAATAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	134987043	135010151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
17356	chr4	+	2391	16	NIC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	17	-379	combination_of_known_splicesites	FALSE	canonical	2	9	junction_8	119.239926199239	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	NA	False	NA	NA	False	NA	NA	NA	44300892	44364296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
17357	chr2	-	2955	4	NIC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	-58	-11	intron_retention	FALSE	canonical	3	494	junction_1	44.0908153700972	19	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTAAACTACTTTGGACT	NA	False	NA	NA	False	NA	NA	NA	75534891	75505867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_75507529_75507888_75508057_75508831_75509774_75534707
17358	chr5	-	2170	15	NNC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	207.267413290765	1233	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	22755354	22691486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_22692216_22704330_22704417_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
17359	chr7	+	2877	9	FSM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	15	0	3	0	multi-exon	FALSE	canonical	3	195	junction_8	19.6273883896967	373	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	132460968	132486840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
17360	chr2	+	1700	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	62	-816	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1169.66059595176	10	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTGTGTTGGGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	121244425	121268352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262216_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
17361	chr1	-	2401	10	NNC	ENSMUSG00000025950.17	novel	2302	9	NA	NA	10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	294.532397765226	1508	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGTGTTTATTATGTG	NA	False	NA	NA	False	NA	NA	NA	65225649	65197780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148_65218176_65225379
17362	chr12	+	3798	7	Antisense	novelGene_ENSMUSG00000100306.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	106	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTCCCCATCTCGAGGC	NA	False	NA	NA	False	NA	NA	NA	87472958	87490582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_87476041_87478169_87478279_87480887_87480978_87485164_87485332_87487078_87487175_87488030_87488114_87490411
17363	chr17	-	3323	14	FSM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	23	5	-7	-5	multi-exon	FALSE	canonical	3	678	junction_3	53.1740471465247	1	131	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACTGTGGTGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	29226946	29189858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
17364	chr16	-	2986	20	NIC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	-13	4	combination_of_known_splicesites	FALSE	canonical	3	24	junction_8	432.161622069831	1	88	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACTTATCTAGCATTTA	1557	False	NA	NA	False	NA	NA	NA	91439984	91418287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844
17366	chr14	+	2384	17	NNC	ENSMUSG00000021975.10	novel	2674	17	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	61.786900664704	470	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAAAGTGCCCAGTTC	NA	False	NA	NA	False	NA	NA	NA	65187753	65277272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257925_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
17367	chr11	-	3442	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	-91	589	-91	90	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	629	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGCTCCTTGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	31320165	31307895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
17368	chr19	-	2674	18	FSM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	7	2	7	0	multi-exon	FALSE	canonical	3	495	junction_17	96.7659038009169	734	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCAGTGTATGTTTCT	NA	False	NA	NA	False	NA	NA	NA	4978308	4957258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
17369	chr10	+	1240	8	Antisense	novelGene_ENSMUSG00000019942.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTGTCTCGGGGGAAA	2386	False	NA	NA	False	NA	NA	NA	69174139	69186725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_69174427_69176310_69176453_69176544_69176706_69178366_69178541_69180890_69181015_69181904_69182058_69185921_69185988_69186592
17371	chr2	+	2803	11	NIC	ENSMUSG00000027180.13	novel	4740	11	NA	NA	-45	-4	combination_of_known_junctions	FALSE	canonical	3	77	junction_10	96.8347045227072	136	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	103858143	103887845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103886345
17372	SIRV7	-	2191	5	NNC	SIRV7A	novel	2498	5	NA	NA	161	-138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1869.39540694311	2	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGTATAGACAATAACAGT	NA	False	NA	NA	False	NA	NA	NA	147757	1143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2673_2993_3112_3809_3897_114680_114989_147608
17373	chr11	+	5217	12	NNC	ENSMUSG00000020261.16	novel	5264	11	NA	NA	-4	0	intron_retention	TRUE	canonical	0	0	junction_11	18.7880742902829	94	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGCAAACTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	55095183	55127156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192_55127000_55127038
17375	chr4	+	3042	15	NNC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	68.6686810351127	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603902	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99603944_99607267_99607437_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
17378	chr10	+	3362	15	Fusion	ENSMUSG00000020250.12_ENSMUSG00000056821.14	novel	894	3	NA	NA	-55	0	multi-exon	FALSE	canonical	1	47	junction_2	264.185193238627	8	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCGTGCCTTCTGACTGA	NA	False	NA	NA	False	NA	NA	NA	82647901	82733544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_82647970_82654864_82654958_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
17379	chr5	+	2285	14	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	26	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	209.992138483449	615	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTTATTTTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	64250318	64285698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265149_64265530_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
17380	chr11	+	2229	18	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	10	-11	intron_retention	TRUE	canonical	3	862	junction_15	82.5750785565228	807	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAAATATAAGACCAATTG	NA	False	NA	NA	False	NA	NA	NA	115455269	115474721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
17381	chr15	+	3167	20	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	3	-5	combination_of_known_splicesites	FALSE	canonical	3	57	junction_19	47.7117383072465	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATCAAAGCTGAACTG	NA	False	NA	NA	False	NA	NA	NA	57775637	57833452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57833119
17382	chr10	+	1988	4	ISM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	64	11558	-5	-2815	5prime_fragment	FALSE	canonical	3	3777	junction_3	176.385940482795	1	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGTTCTGCTGAGGAAT	2116	False	NA	NA	False	NA	NA	NA	61484394	61498389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690
17383	chr10	+	1955	7	ISM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	14059	15	-77	-15	3prime_fragment	FALSE	canonical	3	3841	junction_3	100.514371553967	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTTACTGAAACTTGG	NA	False	NA	NA	False	NA	NA	NA	61498389	61509932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
17384	chr12	+	2469	21	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-23	-4098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	467.473849535993	1	90	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCAAGTAAGTGTGAAATA	7888	False	NA	NA	False	NA	NA	NA	76302048	76357777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326291_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340884_76341008_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682
17387	chr14	-	2220	15	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-9	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	199.448781210943	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	4850	False	NA	NA	False	NA	NA	NA	54754827	54744653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752334_54754027_54754073_54754703
17388	chr12	+	3771	7	NNC	ENSMUSG00000021072.13	novel	2795	8	NA	NA	42	-421	intron_retention	FALSE	non_canonical	0	0	junction_6	194.897123859971	2	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAGTGATGTTGAAGAGA	NA	False	NA	NA	False	NA	NA	NA	70499910	70514393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70507165_70507252_70507355_70511173_70511241_70512749
17389	chr13	-	1508	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	-11	-155	-11	155	mono-exon	FALSE	NA	NA	NA	NA	NA	9	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAAATACTATA	NA	False	NA	NA	False	NA	NA	NA	112731629	112730121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112730100_112731600
17392	chrX	+	2380	5	NIC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	34.5181111881864	645	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	133618684	133622666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_133618800_133619474_133619568_133619668_133619858_133620375_133620475_133620782
17393	chr14	+	1942	6	Antisense	novelGene_ENSMUSG00000041028.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGTCACGCAATATCCGGA	NA	False	NA	NA	False	NA	NA	NA	36842773	36857252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_36844101_36852602_36852735_36853494_36853607_36855127_36855227_36855588_36855765_36857156
17394	chr10	+	2554	8	NNC	ENSMUSG00000078427.4	novel	918	11	NA	NA	-9	4452	intron_retention	FALSE	non_canonical	0	0	junction_7	1992.9008085334	3	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAAAGGTAATATATGTT	NA	False	NA	NA	False	NA	NA	NA	128657791	128689112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128687001
17395	chr14	-	1482	10	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1020.87146262881	9713	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTGCTTTTTACTTAGG	NA	False	NA	NA	False	NA	NA	NA	63746217	63729798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730030_63730101_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
17396	chr4	+	2220	9	NIC	ENSMUSG00000028410.14	novel	5622	9	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	944.437919809979	132	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	-17	True	NA	NA	False	NA	NA	NA	40722939	40733900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40723002_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
17397	chr4	-	3235	4	FSM	ENSMUSG00000040842.18	ENSMUST00000102487.4	3244	4	-5	14	4	-14	multi-exon	FALSE	canonical	3	169	junction_2	126.792043213374	1293	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTCCTCATTTCTG	NA	False	NA	NA	False	NA	NA	NA	140867082	140840325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_140843176_140845837_140846093_140847634_140847685_140867002
17399	chr12	+	4086	4	FSM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	2	10	2	-10	multi-exon	FALSE	canonical	3	99	junction_3	3.2659863237109	208	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAAAGCAATTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	86994118	87012126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86994274_86999517_86999706_87007045_87007216_87008553
17400	chr18	-	2644	22	Antisense	novelGene_ENSMUSG00000024271.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	59	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCACTTCCGCCCCAGAGC	NA	False	NA	NA	False	NA	NA	NA	24771753	24737019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_24737188_24739911_24739993_24742686_24742754_24744965_24745125_24745502_24745582_24747471_24747536_24748215_24748284_24748944_24749083_24750456_24750552_24752132_24752234_24752436_24752571_24755135_24755290_24755530_24755725_24758568_24758635_24759180_24759274_24759443_24759507_24760055_24760123_24764413_24764607_24765813_24765936_24767393_24767532_24767961_24768059_24771450
17401	chr8	-	3596	9	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	18	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	671.104954068289	12	88	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	125589735	125563701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565620_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125587750_125587809_125588011_125589623
17402	chr1	-	3465	15	NNC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	12	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	67.2728604646929	1	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATGGACTATAAAATTT	6067	False	NA	NA	False	NA	NA	NA	53336162	53228362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53334229_53334406_53335317_53335431_53335890
17404	chr10	-	2730	15	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	15	junction_12	145.213635723371	850	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTGCAGTGTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116417405	116321073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116363731_116363855_116384937_116385081_116417357
17405	chr11	-	2637	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	64.3996312101242	533	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3605	False	NA	NA	False	NA	NA	NA	54846925	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
17408	chr15	-	1144	11	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	0	-1399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	734.144427207617	26	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTATTCTTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	10485995	10476263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_10476462_10476544_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
17409	chr6	-	2455	13	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	18	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	988.951535156748	9	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTATCCCTTTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	88875641	88860461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88870419_88870496_88874268_88874499_88875626
17410	chr17	-	2898	7	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	14	-724	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	16.2549137869821	4	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGGAAAAAAAACCCTA	NA	False	NA	NA	False	NA	NA	NA	22533804	22505575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507883_22508749_22508929_22511388_22511437_22528185_22528296_22528485_22528579_22532217_22532302_22533727
17411	chr16	+	4101	20	NIC	ENSMUSG00000033031.14	novel	3974	21	NA	NA	3	-1018	intron_retention	FALSE	canonical	3	180	junction_8	22.8226936679347	11	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGTTATCATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	48814553	48838996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
17412	chr15	-	3240	10	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	-34	55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.6647482461	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTATATTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	38500642	38488426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38489548_38489657_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541
17413	chr13	+	2727	24	NIC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	2854	-8	combination_of_known_splicesites	FALSE	canonical	3	17	junction_14	116.138467646585	8	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAATCCTTTATTGTG	8929	False	NA	NA	False	NA	NA	NA	18966866	19050973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
17414	chr5	+	2998	15	NIC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	156	junction_3	17.6207206412895	348	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGGCCGAGGCTGTAGC	NA	False	NA	NA	False	NA	NA	NA	24599391	24614939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24599582_24604910_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
17415	chr3	-	3258	26	NNC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	13	-271	intron_retention	FALSE	non_canonical	0	0	junction_8	136.772371479038	2	30	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTCAAGAAGCAAAATAATAT	NA	False	NA	NA	False	NA	NA	NA	100069700	100045766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051016_100051144_100051634_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
17417	chrX	-	3140	16	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	3231	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	143.232429599197	1	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149797087	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766870_149768478_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016
17418	chr6	+	2957	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	13	-4	combination_of_known_junctions	FALSE	canonical	3	81	junction_2	130.075362770972	23	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACGCCATGTCTAATAA	5739	False	NA	NA	False	NA	NA	NA	83254387	83281922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
17420	chr7	-	2295	17	NNC	ENSMUSG00000003435.10	novel	3096	22	NA	NA	-3717	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	263.304948859208	1	22	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28021934	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016266_28016406_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021475_28021565_28021644_28021739_28021888
17421	chr10	+	3678	4	NIC	ENSMUSG00000006732.15	novel	1791	6	NA	NA	0	519	intron_retention	FALSE	canonical	3	356	junction_2	31.5066130624456	1	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACCCTAATCCCATGTC	NA	False	NA	NA	False	NA	NA	NA	126877826	126882753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126877940_126878928_126880521_126880624_126880739_126880894
17422	chr7	-	2319	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176158.2	869	3	-54	-1396	-13	1396	multi-exon	FALSE	canonical	1	1	junction_1	1127	28	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTTACACTAAATCACCT	NA	False	NA	NA	False	NA	NA	NA	105460219	105457467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105459352_105459495_105459726_105460014
17423	chr3	+	3432	1	NIC	ENSMUSG00000038612.17	novel	3418	3	NA	NA	885	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	18	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGTAAGGTGTGGTAT	7371	False	NA	NA	False	NA	NA	NA	95567052	95570484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95567100_95570500
17424	chr16	-	2105	19	NNC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	6	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	123.061524811327	47	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTGGGTCTGTGATC	NA	False	NA	NA	False	NA	NA	NA	18630335	18599201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18599324_18600645_18600973_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
17425	chr2	+	1921	5	Antisense	novelGene_ENSMUSG00000045624.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGAGCGCACTCCCACA	NA	False	NA	NA	False	NA	NA	NA	140001036	140012467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
17426	chrUn_JH584304v1	-	2133	7	Intergenic	novelGene_4646	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_1	339.783100750399	1	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACCATAGCTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	59688	52670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53770_54335_54480_54720_54868_55111_55249_55464_55702_58563_58836_59591
17427	chr11	+	1879	11	FSM	ENSMUSG00000059552.14	ENSMUST00000171247.8	1867	11	-11	-1	-11	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	145	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471173	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
17428	chr7	-	1946	8	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	3	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1081.60538279061	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCCTTTTGTCTCACTTT	NA	False	NA	NA	False	NA	NA	NA	117728792	117718128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117718471_117718518_117718610_117718678_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
17429	chr9	+	1749	13	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	4	intron_retention	FALSE	canonical	3	1280	junction_12	410.978600078182	416	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1178	False	NA	NA	False	NA	NA	NA	108437667	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
17431	chr8	-	2773	5	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	20	-4	intron_retention	FALSE	canonical	3	690	junction_2	23.6696007570892	28	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGAATGGTTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	65186562	65171176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_65172216_65173375_65173531_65175497_65176771_65180657_65180943_65186541
17432	chr17	+	3200	9	NNC	ENSMUSG00000024457.17	novel	3203	10	NA	NA	-12	0	intron_retention	FALSE	non_canonical	0	0	junction_5	83.9224902812113	377	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	37148052	37170290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37167076_37167117_37167547_37167664_37167880_37167914_37168291
17433	chr8	+	2617	15	NNC	ENSMUSG00000006273.15	novel	2825	14	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	357.480468996959	249	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACCTGAAATGACTCTGT	NA	False	NA	NA	False	NA	NA	NA	69541417	69566359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081_69566136_69566219
17434	chr11	-	3491	10	FSM	ENSMUSG00000035086.14	ENSMUST00000139997.9	3476	10	-18	3	-10	-3	multi-exon	FALSE	canonical	3	416	junction_6	43.6603048800878	24	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCAAGTGGTACGCCTGT	NA	False	NA	NA	False	NA	NA	NA	101193096	101179090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
17435	chr17	+	2817	20	FSM	ENSMUSG00000024078.8	ENSMUST00000024882.8	2838	20	17	4	-13	0	multi-exon	FALSE	canonical	3	124	junction_5	16.0728948897983	385	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTTATTTTGTGATGTT	NA	False	NA	NA	False	NA	NA	NA	75024743	75170561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
17436	chr12	+	4308	21	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	13	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	198.640951216007	1	127	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGAGATGCTTTCTTTG	3999	False	NA	NA	False	NA	NA	NA	83679043	83729850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83682175_83682256_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698057_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
17437	chr13	+	2870	5	FSM	ENSMUSG00000058258.15	ENSMUST00000177397.8	737	5	-321	-1812	121	-81	multi-exon	FALSE	canonical	0	0	junction_4	250.233266173784	1106	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTCTGGCTTGTTAATA	NA	False	NA	NA	False	NA	NA	NA	8935657	8942406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938135_8940353
17438	chr4	-	3318	7	NIC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	17	-11	intron_retention	FALSE	canonical	3	1259	junction_3	141.491656605218	7	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGGTCTTCCTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	124587376	124572600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_124572780_124573494_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
17439	chr16	+	3370	31	NNC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	162.477762581017	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	29398096	29470697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398364_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424398_29426500_29426588_29427170_29427271_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448441_29448538_29448901_29449013_29467754_29467830_29470571
17441	chr5	-	3488	4	NNC	ENSMUSG00000063406.12	novel	3800	4	NA	NA	-7	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	114.453289841557	6	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTACCAACCTATCATAA	NA	False	NA	NA	False	NA	NA	NA	108280422	108269506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108272626_108273766_108273951_108277883_108277982_108280335
17442	chr9	-	1078	7	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2181.46088283364	287	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775102	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769066_110769711_110769888_110771396_110771507_110771597_110771654_110772244_110772322_110773258_110773312_110774891
17443	chr17	+	3317	6	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	19759	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	56.2899635814414	211	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTTTTGGTATAT	NA	False	NA	NA	False	NA	NA	NA	43347217	43400080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_43347446_43348485_43349138_43350585_43351081_43375858_43376125_43396226_43396456_43398633
17444	chr11	-	3139	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9012	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	527.541097420339	1	109	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAATAAAATTGATTTTT	412	False	NA	NA	False	NA	NA	NA	106615232	106545070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106575043_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
17446	chr4	-	1890	7	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	20	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	682.342146987533	1298	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCCTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137084990	137047013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137047964_137048133_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
17447	chr17	+	6400	33	FSM	ENSMUSG00000024130.17	ENSMUST00000039013.15	6476	33	73	3	-1	-3	multi-exon	FALSE	canonical	3	19	junction_1	5.69230566203186	63	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCAGTCTTTGAGTCATA	NA	False	NA	NA	False	NA	NA	NA	24571069	24629172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24571226_24576892_24576966_24579861_24580064_24583450_24583561_24583666_24583932_24585059_24585188_24585741_24585908_24593217_24593478_24595337_24595455_24595638_24595760_24596659_24596834_24600872_24601055_24602873_24603018_24603420_24603551_24604371_24604527_24604790_24604947_24605155_24605367_24606409_24606561_24611861_24611961_24615423_24615611_24616259_24616564_24617308_24617583_24618858_24619064_24619381_24619602_24619767_24619927_24621238_24621412_24623998_24624128_24624218_24624414_24626531_24626720_24627082_24627254_24627510_24627702_24627798_24627873_24628242
17448	chr17	+	945	9	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-11	-901	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	745.201482821928	1	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCATCGCCCTGGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	35460769	35471751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462189_35462325_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722
17449	chr5	-	2866	9	ISM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	2129	3	-167	-3	3prime_fragment	FALSE	canonical	3	193	junction_5	44.4056232362524	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTAGTTTCTGTTCCTA	NA	False	NA	NA	False	NA	NA	NA	5607409	5587456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212
17450	chr15	-	3290	13	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	8804	-372	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	215.03841711037	1	91	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGTACATTTTGGAACA	NA	False	NA	NA	False	NA	NA	NA	51846102	51826007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51827644_51828350_51828435_51830073_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924
17451	chr15	-	1696	16	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	-61	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	437.539585510716	6	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTTCGTCCTGTGCT	2852	False	NA	NA	False	NA	NA	NA	77854906	77843203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843762_77843851_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
17452	chr9	+	2083	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	29	0	29	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	16	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	NA	False	NA	NA	NA	55116237	55131717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
17453	chr15	+	3908	9	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	0	392	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	46.1078897803836	132	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAATAAATTCGTCTCC	NA	False	NA	NA	False	NA	NA	NA	93296277	93389783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
17454	chr15	-	2042	6	ISM	ENSMUSG00000016757.12	ENSMUST00000136066.8	3575	13	13295	525	5030	-525	3prime_fragment	FALSE	canonical	3	263	junction_3	9.80612053770501	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGTCTTTTCTCTTTG	8033	False	NA	NA	False	NA	NA	NA	83466063	83459844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868
17456	chr15	+	4829	7	NIC	ENSMUSG00000022412.15	novel	4097	8	NA	NA	2	-39	intron_retention	FALSE	canonical	3	18	junction_1	92.8636994022243	1	146	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTGGAGTGGCCCATCA	2838	False	NA	NA	False	NA	NA	NA	80118303	80136948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80118760_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132527_80132705_80133529
17457	chr5	+	4880	13	FSM	ENSMUSG00000029168.15	ENSMUST00000114729.8	5191	13	305	6	-25	0	multi-exon	FALSE	canonical	3	45	junction_9	9.12718771339538	132	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGCCTCTGTTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	30869212	30956713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30946042_30946185_30948835_30948979_30949463_30949672_30951277_30951447_30953580
17458	chr9	+	1747	15	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-14	2	combination_of_known_junctions	FALSE	canonical	3	50	junction_9	848.284297862456	293	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGACAACTGATCTTTGA	1165	False	NA	NA	False	NA	NA	NA	108437654	108442770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
17460	chr3	+	2112	17	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_13	321.704827588505	2	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4840	False	NA	NA	False	NA	NA	NA	34074237	34123494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116012_34116181_34118267_34118469_34122309_34122402_34123065
17461	chr11	-	1864	10	NIC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-2	intron_retention	FALSE	canonical	3	9657	junction_9	1476.46728860513	10	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTGGGCTTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	69563141	69557764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
17463	chr2	-	2605	13	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	39	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.75921269257	764	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGAGCTTTATAGGAAT	NA	False	NA	NA	False	NA	NA	NA	165740897	165669067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726527_165726759_165740835
17464	chrX	+	2186	10	FSM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	2	1	2	-1	multi-exon	TRUE	canonical	3	647	junction_4	26.5934179176579	1683	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACAGTAGATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73340704	73348326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
17465	chr15	+	1830	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-25	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	508.676550799556	909	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959422	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968488_78969823_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
17466	chr11	+	1539	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-31	multi-exon	FALSE	canonical	0	0	junction_1	0	10	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654210_120654265
17467	chr2	+	2067	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	0	13	0	0	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	1558	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	NA	False	NA	NA	NA	28358077	28361177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
17468	chr10	-	2807	9	NNC	ENSMUSG00000019877.11	novel	2880	9	NA	NA	-26	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	89.3335568249692	428	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTGTGGTGGTAGCAT	NA	False	NA	NA	False	NA	NA	NA	57408599	57391873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401583_57403794_57403923_57408452
17469	chr4	+	4286	26	NNC	ENSMUSG00000028552.14	novel	2802	25	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	45.906269724298	114	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTTTGTTATCTTGTCC	NA	False	NA	NA	False	NA	NA	NA	109137574	109245010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178523_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515_109243476_109244373
17470	chr7	+	2397	8	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	558	0	-50	0	3prime_fragment	TRUE	canonical	3	394	junction_5	16.39686381163	733	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	143383920	143402147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
17471	chr12	-	3657	13	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	-15	-6	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	24.4108354811729	180	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGAGCTTTTGCCCATGA	NA	False	NA	NA	False	NA	NA	NA	83968679	83840850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
17473	chr15	-	3031	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	7	6	7	-3	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	1	116	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATACACAGTGAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	38300943	38294662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
17475	chr2	+	2558	12	FSM	ENSMUSG00000017721.16	ENSMUST00000103101.11	2562	12	-3	7	-3	-7	multi-exon	TRUE	canonical	3	37	junction_9	44.392501786631	585	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTAGGTCGTTGCTTCC	5109	False	NA	NA	False	NA	NA	NA	164339436	164350214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194
17476	chr16	-	4811	30	NNC	ENSMUSG00000064061.14	novel	5820	32	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_13	38.4648023859756	7	31	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTTCTTTATGTATT	4420	False	NA	NA	False	NA	NA	NA	48814305	48744594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48771957_48774089_48774167_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
17478	chr4	+	2548	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	248	1	248	-1	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	1874	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGATCAGATTATACTTG	5296	False	NA	NA	False	NA	NA	NA	89055606	89099317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
17479	chr18	+	2616	22	NNC	ENSMUSG00000024507.7	novel	2684	24	NA	NA	26	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91.9199839355514	3	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCCCTTCCTGCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	50261293	50329330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_50261498_50272514_50272623_50273406_50273472_50275645_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
17480	chrX	-	3144	14	Antisense	novelGene_ENSMUSG00000001127.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCCACCGCCACCGTCC	NA	False	NA	NA	False	NA	NA	NA	20725995	20714800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20714857_20716163_20716320_20716481_20716587_20717703_20717814_20717900_20718052_20718168_20719699_20719881_20720054_20720149_20720353_20723647_20723760_20723848_20724026_20724114_20724168_20724636_20724751_20724979_20725108_20725918
17481	chr16	-	2366	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	1006.61305375998	23	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55850050	55835869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55844824_55845001_55849965
17482	chr19	-	3758	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	9	-1599	3	210	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	901	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCACTGCCCGGCCATATG	7448	False	NA	NA	False	NA	NA	NA	55304455	55285133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
17483	chr16	+	2654	1	FSM	ENSMUSG00000092029.2	ENSMUST00000165914.2	661	1	-176	-1817	-176	1817	mono-exon	FALSE	NA	NA	NA	NA	NA	1	89	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGATAAGACCTTATA	NA	False	NA	NA	False	NA	NA	NA	61197442	61200096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_61197400_61200100
17484	chr14	+	3284	10	ISM	ENSMUSG00000035469.18	ENSMUST00000022551.14	3957	13	9285	0	4914	0	3prime_fragment	FALSE	canonical	3	278	junction_9	26.5390464722137	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	7004	False	NA	NA	False	NA	NA	NA	59447975	59474714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
17485	chr10	-	4792	11	ISM	ENSMUSG00000019809.17	ENSMUST00000170376.8	1381	12	108	278	86	-4	5prime_fragment	FALSE	canonical	3	96	junction_5	16.5435788147547	19	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGCTTTTTAGCCATTA	NA	False	NA	NA	False	NA	NA	NA	13428778	13399863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
17486	chr9	+	1539	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6159.02867722773	152	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTTGTTCCACATGGT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080720_64082111_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
17488	chr8	-	2433	3	NNC	ENSMUSG00000050052.13	novel	2463	3	NA	NA	12	-8	intron_retention	TRUE	canonical	3	30	junction_2	133	109	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGAGATTCTTTAGTGTG	4826	False	NA	NA	False	NA	NA	NA	14024731	14002015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_14004136_14005719_14005818_14024516
17489	chr8	-	3693	17	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-10	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	517.447034578178	2	163	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTCTTTGAGACAGGTT	NA	False	NA	NA	False	NA	NA	NA	80438309	80410080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80411907_80412573_80412686_80414069_80414212_80414292_80414430_80414527_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427503_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
17490	SIRV1	-	677	2	ISM	SIRV1A	SIRV106	973	3	3040	1	2620	-1	3prime_fragment	FALSE	canonical	3	905	junction_1	0	1	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCGATGCATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	7746	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV1_-_1485_7552
17491	chr1	-	2455	12	NNC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	432.25862705232	14	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAAGTGTTTATTATGT	NA	False	NA	NA	False	NA	NA	NA	65225620	65197781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218921_65218975_65220457_65220529_65220786_65220858_65225463
17493	chr1	+	2599	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	29	217	0	-217	multi-exon	FALSE	canonical	3	576	junction_4	38.3577313661217	90	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTACTTTTGTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	71596337	71618573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
17494	chr17	-	3403	11	FSM	ENSMUSG00000024222.18	ENSMUST00000079413.11	3543	11	137	3	81	0	multi-exon	FALSE	canonical	2	296	junction_7	83.3980815127063	475	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	NA	False	NA	NA	NA	28704986	28618070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28647325_28647441_28648194_28648338_28656965_28657111_28659901_28660028_28704925
17496	chr11	+	1611	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	0	15	0	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	23	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120655200
17497	chr11	-	4188	9	NNC	ENSMUSG00000001036.18	novel	4207	9	NA	NA	6	-42	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	141.63752151178	1	135	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTATTTACTGTATAAAT	NA	False	NA	NA	False	NA	NA	NA	61470505	61408117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426092_61426210_61436975_61437738_61470366
17498	chr1	-	2419	13	ISM	ENSMUSG00000026193.16	ENSMUST00000190780.7	7694	44	74	46155	63	-2222	5prime_fragment	FALSE	canonical	3	1514	junction_4	85.1020221068023	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTTCCAGAGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	71692257	71670837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
17499	chr6	-	1216	8	Antisense	novelGene_ENSMUSG00000030204.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACTTAAGAGCTCTTAAG	NA	False	NA	NA	False	NA	NA	NA	135000732	134992853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_134992902_134993542_134993615_134994081_134994199_134995011_134995157_134995932_134996073_134997576_134997650_134998411_134998541_135000240
17500	chr14	-	3971	27	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	9	-2	intron_retention	FALSE	canonical	0	0	junction_25	103.700752908772	3	101	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATACTATAAGGAAGCAGC	9754	False	NA	NA	False	NA	NA	NA	55873132	55863182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866633_55866716_55866775_55866850_55866923_55867205_55867325_55867434_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
17501	chrX	-	4232	10	NNC	ENSMUSG00000031134.17	novel	2139	10	NA	NA	3	176	intron_retention	FALSE	canonical	2	5	junction_2	21.6595429884644	10	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTTGTGGTGTTGGG	NA	False	NA	NA	False	NA	NA	NA	56438338	56428713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_56429922_56430492_56430582_56431500_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
17502	chr4	-	3551	9	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	6	-8	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_8	189.203428880134	1	100	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTATTAGAATCCTAATG	NA	False	NA	NA	False	NA	NA	NA	126954873	126941393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126951193_126951387_126952585_126952825_126953302_126953453_126954703
17503	chr11	+	2842	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	-7	13	3	-13	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	98	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTCAAAAGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	80319443	80364061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
17504	chr12	+	2333	19	NIC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	44	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	198.538611476241	902	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGGTGCCTGTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	21335569	21364836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_21335713_21336446_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
17506	chr9	+	3481	11	Fusion	ENSMUSG00000103970.2_ENSMUSG00000006673.15	novel	756	3	NA	NA	79	2	multi-exon	FALSE	canonical	3	12	junction_1	234.191481484703	56	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1762	False	NA	NA	False	NA	NA	NA	108394900	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_108395176_108395901_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
17507	chr4	-	2824	18	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	2171	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.7346178218283	10	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGACTTGTCTTTCCTCT	3721	False	NA	NA	False	NA	NA	NA	41120583	41114427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114838_41115121_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537
17511	chr11	+	2226	14	NNC	ENSMUSG00000007850.17	novel	1724	12	NA	NA	37	4	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	136.800896221847	1618	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTGCTTTAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	50268632	50277359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268713_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
17512	chr11	+	1897	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	27	2	-21	-2	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	163	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACGTTGTGGTGTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	4823977	4844198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
17513	chr1	-	3108	13	NNC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	-15	-5	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_7	42.22426895624	182	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTTTGTTTTCACGTC	6037	False	NA	NA	False	NA	NA	NA	53336192	53228350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255345_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
17514	chr1	+	3192	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	3	142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	432.935033296632	1	117	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTTAGTTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	85992365	86067015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055884_86056028_86058358_86058452_86060435_86060523_86061359_86061497_86064684_86064839_86066801
17515	chr11	+	2825	17	NNC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	1	-946	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	73.1481533857827	459	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	NA	False	NA	NA	NA	43324571	43337862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_43324647_43327180_43327313_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
17516	chr3	+	1940	9	NNC	ENSMUSG00000078578.10	novel	2504	8	NA	NA	-77	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1150.31691285489	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGAGTTGTCATGAGGC	NA	False	NA	NA	False	NA	NA	NA	135144163	135172279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144187_135144316_135144381_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
17517	chr4	-	2439	9	NIC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	10	-3	intron_retention	FALSE	canonical	3	1430	junction_5	130.887117395105	103	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTCCTCGGTCATCTGC	NA	False	NA	NA	False	NA	NA	NA	124830700	124812260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_124812824_124813405_124813493_124814051_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
17520	chr16	+	4699	17	NNC	ENSMUSG00000022797.17	novel	4890	19	NA	NA	-667	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	107.610698817543	1	196	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTCGGACTCATTTCA	2083	False	NA	NA	False	NA	NA	NA	32433382	32451610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447307_32447435_32448911
17521	chr4	+	3320	27	NNC	ENSMUSG00000043411.16	novel	5741	27	NA	NA	256	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_26	312.651433131296	9	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	847	False	NA	NA	False	NA	NA	NA	137321794	137385842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137385506
17522	chr16	-	2774	16	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	1573	7	NA	NA	10	494	multi-exon	FALSE	canonical	3	41	junction_15	402.092007160329	116	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGACTAAGCAGTTGCTC	6276	False	NA	NA	False	NA	NA	NA	38370574	38318214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369759_38370444
17523	chr9	+	2901	21	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	62	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAGAGCCCGGCGGCGA	NA	False	NA	NA	False	NA	NA	NA	61824558	61854018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826253_61826893_61826914_61828304_61828529_61831913_61832093_61832250_61832426_61832811_61832970_61833642_61833803_61834327_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61842662_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851608_61852619_61852701_61853892
17524	chr2	-	3324	21	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-54	418	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	48.2808450630268	180	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCATGGAGTTGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	71197931	71104615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71159421_71159467_71160179_71160375_71163948_71164065_71174233_71174377_71196870_71196925_71197856
17525	chr6	+	4401	13	NIC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	3	-19	intron_retention	FALSE	canonical	3	32	junction_6	51.9548415025545	3	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTTAAATACTTGGAAT	9769	False	NA	NA	False	NA	NA	NA	86381288	86409143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
17527	chr11	+	1075	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	593	-17559	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	40	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATCTTTTAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	88861670	88864221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861851_88862193_88862314_88863446
17529	chr17	+	1999	10	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	95	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGGCAAGCCTAGGCTGC	NA	False	NA	NA	False	NA	NA	NA	45879261	45884154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879491_45879789_45880061_45880179_45880314_45880395_45880753_45881183_45881493_45881591_45881721_45881938_45882109_45882344_45882548_45882692_45882840_45884104
17531	chr14	-	4647	5	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	118460	0	51676	0	3prime_fragment	FALSE	canonical	3	557	junction_4	35.6826288269236	4	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	14533356	14518184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593
17532	chr9	+	529	1	FSM	ENSMUSG00000059252.6	ENSMUST00000112150.4	516	1	125	-138	125	138	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTTAAGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37607935	37608464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_37607900_37608500
17533	chr4	+	3112	10	NNC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	4	0	intron_retention	FALSE	canonical	1	9	junction_3	74.877348270025	1	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8296	False	NA	NA	False	NA	NA	NA	156194479	156211722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194631_156198345_156198459_156201152_156201306_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
17534	chr16	-	2764	23	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	76.039191721677	7	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	13486001	13355823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482562_13483766_13483846_13485397_13485476_13485874
17535	chr7	-	3485	28	NNC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	274.742563128673	2	112	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACGAAGAGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	28038164	28014315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018171_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021708_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028220_28028675_28028750_28028840_28028910_28029007_28029078_28030004_28030071_28030794_28030955_28037776_28037861_28038119
17536	chr1	-	775	5	ISM	ENSMUSG00000026193.16	ENSMUST00000186879.2	2104	6	0	3635	0	-2469	5prime_fragment	FALSE	canonical	3	1661	junction_2	36.8408740395773	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTCGTGGGGGAGACCTG	NA	False	NA	NA	False	NA	NA	NA	71692331	71687270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
17537	chr14	+	3083	12	NIC	ENSMUSG00000021981.11	novel	3037	11	NA	NA	-4	-9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	121.129873610896	567	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCACATACTTTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	59678416	59786343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_59678468_59696542_59696691_59699083_59699152_59715480_59715523_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
17538	chr14	-	2590	12	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	294.161169069661	2	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCATTTCATTGTTCAGTG	6422	False	NA	NA	False	NA	NA	NA	66071365	66056491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66068541_66068780_66069244_66070112_66070191_66071250
17539	chr17	-	3204	7	NIC	ENSMUSG00000025728.17	novel	3278	10	NA	NA	1	42	intron_retention	FALSE	canonical	3	243	junction_3	24.0883789408918	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAACCGTCCCAAAGCTGA	NA	False	NA	NA	False	NA	NA	NA	26160906	26146369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26146731_26147764_26147827_26149494_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
17540	chr6	-	2613	21	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-6	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	263.386118654723	1	51	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGGGCTGACTGGTTT	7899	False	NA	NA	False	NA	NA	NA	124806404	124791994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792054_124792517_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796960_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
17541	chr4	+	4136	6	FSM	ENSMUSG00000038827.12	ENSMUST00000131520.8	4360	6	224	0	-42	0	multi-exon	FALSE	canonical	3	7	junction_1	52.8189359983709	40	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	-16	True	NA	NA	False	NA	NA	NA	56802575	56809601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_56802727_56803507_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
17542	chr12	+	4033	15	Antisense	novelGene_ENSMUSG00000051235.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	116	9	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTTCCGGGAAATGGCT	6580	False	NA	NA	False	NA	NA	NA	11288946	11315808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_11289592_11290848_11292576_11293188_11293339_11296292_11296352_11298215_11298347_11299130_11299216_11300056_11300089_11300713_11300864_11302002_11302092_11304347_11304424_11305152_11305268_11306837_11307016_11310882_11311069_11312406_11312600_11315591
17544	chr10	-	2371	7	NIC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	19	-33	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	324.615884118788	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGTTGCCAGATACA	NA	False	NA	NA	False	NA	NA	NA	82599959	82584567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82592535_82592630_82597666_82597748_82599837
17545	chr3	+	1811	11	FSM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	1	-685	1	3	multi-exon	TRUE	canonical	3	509	junction_1	98.0487633782293	2412	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATGTGTTATGTGTTG	NA	False	NA	NA	False	NA	NA	NA	145281960	145310553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
17547	chr13	-	5599	22	NNC	ENSMUSG00000049658.14	novel	9921	39	NA	NA	-2562	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.7407152738068	74	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTTTGTCCTTTTCA	6836	False	NA	NA	False	NA	NA	NA	100195283	100154503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100155321_100155471_100156919_100160107_100160364_100161904_100162161_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233_100183348_100186143_100186538_100187452_100187638_100187855_100188064_100189480_100189627_100191603_100191812_100192666_100192849_100195233
17548	chr8	-	5687	15	NNC	ENSMUSG00000031523.17	novel	6159	14	NA	NA	-22	-367	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.2174181447002	50	149	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCCCCAGACCAAGGTC	NA	False	NA	NA	False	NA	NA	NA	37081050	37035271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_37035929_37035986_37037558_37038418_37038593_37039821_37040040_37041108_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
17549	chr15	+	1959	12	NIC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	129	junction_8	403.492951590819	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTATGCAGTGCTAGTCA	195	False	NA	NA	False	NA	NA	NA	38662187	38692682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687259_38687354_38689368_38689467_38690776_38690904_38691855
17550	chr2	-	2444	5	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	583	-3	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_4	223.600648478487	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534250	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534000
17551	chr9	-	3337	20	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6357	37220	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	88	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTCAAAAAAAAAAAAAAAAG	5014	False	NA	NA	False	NA	NA	NA	21316659	21279317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299090_21299403_21299443_21299915_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306762_21307314_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311147_21314392_21314808_21315360_21315486_21315989
17552	chr7	-	3378	6	FSM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	9	0	-1	0	multi-exon	FALSE	canonical	3	123	junction_4	35.6168499449348	277	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTTTTGTTATAATTT	NA	False	NA	NA	False	NA	NA	NA	92523446	92506732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92521969_92522053_92523348
17553	chr11	-	2878	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	24	130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	189.137222378063	539	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACATCCAACTCCAGCT	7793	False	NA	NA	False	NA	NA	NA	113456558	113135548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456411
17554	chr14	-	3377	18	FSM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	34	5	-9	2	multi-exon	FALSE	canonical	3	136	junction_13	13.8696352514015	205	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAACTGTCTTGGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	123220661	123156387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
17555	chr17	-	4385	6	ISM	ENSMUSG00000036568.8	ENSMUST00000040624.7	6575	11	19186	32	-42	-32	3prime_fragment	FALSE	canonical	3	125	junction_4	7.22772439983706	184	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCATTGCAATACAGCCAAA	NA	False	NA	NA	False	NA	NA	NA	47123153	47109077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849
17556	chr17	-	2356	9	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	12	-507	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	13.3674043852949	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCCTCAAATCTTAGGAG	NA	False	NA	NA	False	NA	NA	NA	22533806	22505358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22506559_22507315_22507883_22508763_22508877_22509669_22509732_22511388_22511437_22528185_22528296_22528485_22528579_22532217_22532302_22533727
17560	chr1	+	3217	13	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	947	-3	intron_retention	FALSE	non_canonical	0	0	junction_8	663.895678719347	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59730284	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744908_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
17561	chr5	-	3113	19	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	70	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	52.7199683395997	1	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGCCAGACCTCTCTT	1019	False	NA	NA	False	NA	NA	NA	36987927	36964256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981490_36983476_36983557_36985207_36985314_36986971_36987119_36987781
17562	chr9	-	2277	12	NIC	ENSMUSG00000032113.17	novel	3397	13	NA	NA	-14	2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	132.258762149391	1011	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGGTCCTGTATTCCTT	707	False	NA	NA	False	NA	NA	NA	36637895	36620733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
17563	chr14	+	1682	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	85	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6575	False	NA	NA	False	NA	NA	NA	76741953	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744462_76744503
17564	chr17	-	3462	22	NNC	ENSMUSG00000024135.11	novel	3530	21	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	29.7008516640375	213	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	NA	False	NA	NA	NA	86452574	86292092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428073_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443667_86443709_86443964_86446496_86446678_86449787_86449868_86452548
17565	chr12	-	3619	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	3	42	junction_7	30.4074262351803	188	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTGCCCATGAAGGGC	NA	False	NA	NA	False	NA	NA	NA	83968669	83840845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
17566	chr4	+	2176	4	FSM	ENSMUSG00000028936.16	ENSMUST00000139685.8	2051	4	-128	3	-3	-2	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	316	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTCACTGTGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	152410195	152418525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
17569	chr13	+	2974	7	Antisense	novelGene_ENSMUSG00000035834.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCGCACTGGAAGCCCCG	NA	False	NA	NA	False	NA	NA	NA	81821967	81859111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_81824241_81826234_81826378_81830229_81830310_81837312_81837375_81842764_81842892_81847858_81848013_81858976
17570	chr5	-	3134	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	36	-7	0	7	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	3843	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAGACTGCTACTTATAA	NA	False	NA	NA	False	NA	NA	NA	30278579	30263817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
17571	chr3	+	2878	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	0	-200	0	198	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	429	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTTTCTTTTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	57643482	57742852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
17572	chr5	+	2869	12	NNC	ENSMUSG00000036817.15	novel	2454	19	NA	NA	2887	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	277.70598043659	4	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGGCTTGTCTTATCT	254	False	NA	NA	False	NA	NA	NA	139200908	139235590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212578_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
17574	chr5	+	2160	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	55	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	743.705078008451	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650770	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655901_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
17576	chr11	+	2030	11	ISM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	2515	-576	55	-103	3prime_fragment	FALSE	canonical	3	261	junction_8	292.648748502364	38	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	NA	False	NA	NA	NA	80276737	80286968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
17577	chr15	-	1432	6	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4729.17372909899	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	160	False	NA	NA	False	NA	NA	NA	98832317	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829480_98829579_98830023_98830102_98830444_98830572_98830722_98830853_98831077_98832213
17578	chr4	-	2934	12	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-4	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	248.776011971073	120	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATGTAAACGGACTGT	6783	False	NA	NA	False	NA	NA	NA	126096444	126057886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126058035_126060758_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
17579	chr2	+	2616	7	FSM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	-11	4	-11	-4	multi-exon	FALSE	canonical	3	147	junction_2	25.1197133741609	856	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTTGGTTGAGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	119378166	119417504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
17580	chr10	-	2732	17	NNC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-13	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	103.855969977657	611	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTCTGTTTTTATTCT	8138	False	NA	NA	False	NA	NA	NA	62486965	62451809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62468858_62468994_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
17581	chr15	-	3080	18	NNC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	-2273	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	203.254336385514	25	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	99551810	99518376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99551645
17582	chr5	-	2001	13	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10657	-8022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	48	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTGCGGGGTCTTCTC	3896	False	NA	NA	False	NA	NA	NA	129875170	129864466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867062_129867698_129867750_129868530_129868644_129868845_129869005_129869082_129869164_129870696_129870793_129871410_129871561_129872188_129872330_129874421_129874494_129874585
17584	chr7	-	3524	11	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-7175	-257	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_10	17.8896618190507	189	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAATATTCATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	26393037	26364908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26389739_26389834_26390877_26392411_26392894
17586	chr5	-	2485	3	FSM	ENSMUSG00000066551.13	ENSMUST00000133667.2	654	3	3	-1834	-2	-6	multi-exon	FALSE	canonical	3	5649	junction_2	1488.5	37	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTAGTATTGTTGTCCTT	6791	False	NA	NA	False	NA	NA	NA	148989823	148985043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148987251_148987397_148987562_148989709
17588	chr18	-	2900	23	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	14.5809226657686	1	92	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCACGCTGGCCGTGCGG	NA	False	NA	NA	False	NA	NA	NA	32999380	32970489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970624_32974085_32974195_32974947_32975066_32976812_32976948_32978643_32978696_32979879_32980016_32980213_32980386_32980673_32980763_32981348_32981404_32982120_32982210_32983436_32983589_32985033_32985153_32985542_32985701_32985913_32986025_32987831_32987912_32992271_32992376_32994074_32994175_32994551_32994704_32995977_32996098_32996231_32996309_32997695_32997892_32998903_32999195_32999229
17589	chr10	+	1621	5	Antisense	novelGene_ENSMUSG00000019773.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCGCAGGTCACTGCAGG	NA	False	NA	NA	False	NA	NA	NA	5749184	5755304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5749821_5750251_5750435_5751150_5751243_5751868_5752531_5755256
17591	chrX	+	2371	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	61	-6	15	0	multi-exon	FALSE	canonical	3	597	junction_2	148.5	78	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	133501988	133507809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133503440_133503512_133505603
17592	chr2	-	3293	8	NIC	ENSMUSG00000026878.18	novel	3081	8	NA	NA	-4	260	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	365.068235165059	13	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGATTGTCATAGTGCAG	9721	False	NA	NA	False	NA	NA	NA	35090963	35069956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35072581_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
17593	chr19	+	2621	10	NNC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	23	1	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	109.160432391962	16	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTCTAGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	38043512	38062870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38043766_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
17594	chr11	-	2447	10	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	2	intron_retention	FALSE	canonical	0	0	junction_5	618.027687261843	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454308_120454620_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
17595	chr7	-	1685	7	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-158	-22	intron_retention	FALSE	canonical	0	0	junction_5	7561.54145256699	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAACAACTATTTAAGG	NA	False	NA	NA	False	NA	NA	NA	126398584	126394429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396508_126396949_126398216
17597	chr7	-	2634	13	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	8	0	intron_retention	FALSE	canonical	0	0	junction_12	320.605449371446	1	48	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102821	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143102763
17598	chr8	+	2445	21	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	262.852482392691	3	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTCTTTTTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	94941212	95041485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95028800_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
17599	chrX	-	2671	9	FSM	ENSMUSG00000054727.3	ENSMUST00000067940.3	1224	9	-12	-1435	-12	1435	multi-exon	FALSE	canonical	3	1101	junction_5	153.190241203544	3312	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCTAGAATAGCATTCCA	NA	False	NA	NA	False	NA	NA	NA	52759810	52743432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
17600	chr2	-	2025	8	NNC	ENSMUSG00000050043.17	novel	2282	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	578.462846953996	1263	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5297	False	NA	NA	False	NA	NA	NA	84508394	84501659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508141
17603	chr12	+	2142	9	NNC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	4	-1	intron_retention	FALSE	canonical	3	68	junction_5	830.705865138197	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAACTGCTTTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	80992311	80997270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995437_80995868_80995943_80996267_80996379_80996493
17604	chr4	-	4395	19	FSM	ENSMUSG00000029020.14	ENSMUST00000105716.9	4241	19	-154	0	-137	0	multi-exon	TRUE	canonical	2	51	junction_4	9.87139526330723	86	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTCTCTGCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	147989298	147958055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
17605	chr5	-	2550	1	ISM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	69945	0	12770	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGTGTGGTCTCAAGC	NA	False	NA	NA	False	NA	NA	NA	148266769	148264219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_148264200_148266800
17606	chrX	-	2528	15	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	-6	11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	379.658815683938	7	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTTTGTGAGATGAGGGA	NA	False	NA	NA	False	NA	NA	NA	95000498	94978929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984226_94984268_94984555_94990016_94990165_94990472_94990680_94991003_94991055_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
17607	chr13	+	3789	21	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	25	-5	combination_of_known_junctions	FALSE	canonical	2	12	junction_15	66.4404056279009	111	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATACCGTCTACTGGCA	NA	False	NA	NA	False	NA	NA	NA	35059511	35090042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35085657_35085980_35086115_35086612_35086659_35087169_35087257_35087512_35087586_35088026_35088073_35089865
17608	chr10	+	1523	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	40	353	7	-122	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	39	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAAGCCTTCTACATGGT	NA	False	NA	NA	False	NA	NA	NA	127919181	127925907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
17609	chr18	-	2737	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	91	-219	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	2129.37514950836	1	113	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTGTGAATGGTGAT	290	False	NA	NA	False	NA	NA	NA	35087319	35070685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079086_35079544_35079712_35080965_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
17611	chr12	-	2740	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-21	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4901.34970084772	2	135	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATAAAAAGAAGTGTGGA	NA	False	NA	NA	False	NA	NA	NA	110662744	110657474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658569_110658882_110659037_110659307_110659451_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
17613	chr10	-	2680	7	NNC	ENSMUSG00000071359.14	novel	2873	7	NA	NA	-17	-19	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	90.384364429548	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGTGAATATATACATCCA	NA	False	NA	NA	False	NA	NA	NA	22607277	22579796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587886_22607014
17614	chr7	+	2409	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	303	10	8	-2	multi-exon	FALSE	canonical	3	986	junction_1	0	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACCAGACTTGCTGTGA	378	False	NA	NA	False	NA	NA	NA	44465814	44480226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
17615	chr14	-	3043	8	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	5	4	intron_retention	FALSE	canonical	3	157	junction_7	1610.44522934954	1	103	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCTCCAAAATAATCTCT	8768	False	NA	NA	False	NA	NA	NA	52341442	52312251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52319361_52321571_52321849_52334778_52336002_52341345
17617	chr5	+	3059	20	Antisense	novelGene_ENSMUSG00000029253.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	112	6	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAACGAGCCACGCCTGC	NA	False	NA	NA	False	NA	NA	NA	86159876	86213376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_86160193_86161284_86161368_86164058_86164216_86166247_86166344_86168687_86168808_86170230_86170345_86176994_86177050_86180247_86180331_86181423_86181571_86182089_86182368_86183272_86183449_86185170_86185495_86185578_86185771_86193142_86193359_86194235_86194440_86195442_86195543_86200029_86200103_86206014_86206106_86209862_86209910_86213189
17618	chr11	+	2191	12	NNC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	9	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	218.267672502146	39	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGCCGGCGTGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	76836573	76878204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859486_76862734_76862805_76877301
17619	chr3	+	1993	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	691.544468186457	2	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTTGTCATGTGTTTT	3817	False	NA	NA	False	NA	NA	NA	88204435	88229073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220518_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
17621	chr10	-	3833	21	NNC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	14	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	49.920937491197	385	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTGGTTTTGTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	78020969	78006745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018585_78018829_78018875_78019891_78020005_78020904
17622	chr17	-	1984	9	NNC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	930.94359892262	23	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	80514732	80507508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80508371_80508669_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511823_80512690_80512868_80513276_80513458_80514603
17623	chr4	+	2553	9	FSM	ENSMUSG00000028249.16	ENSMUST00000029912.11	2745	9	33	159	6	-159	multi-exon	FALSE	canonical	3	359	junction_4	40.7944542799631	933	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTGTTTCATTAAGT	1	True	NA	NA	False	NA	NA	NA	6365682	6396125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
17624	chr16	-	3179	22	NNC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	589.220839141753	1	116	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	91443834	91418282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418633_91418730_91418851_91419780_91419923_91420258_91420390_91421214_91421358_91422327_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
17625	chr6	+	4272	31	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	95.4357317197751	1	175	20	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGTTTGTTCTTACTTA	NA	False	NA	NA	False	NA	NA	NA	116185011	116239628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197610_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231380_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
17626	chr2	-	2127	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	-118	17	-118	-17	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	1368	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTTGATATGTGAAACAT	NA	False	NA	NA	False	NA	NA	NA	152186070	152179358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
17627	chr18	+	2575	24	NNC	ENSMUSG00000024507.7	novel	2684	24	NA	NA	29	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	65.2652867606864	7	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTTGTCTCCCTTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	50261296	50329325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315071_50316279_50316365_50324778_50324907_50328921
17628	chr13	+	5067	14	FSM	ENSMUSG00000021457.15	ENSMUST00000120135.8	5363	14	292	4	28	-4	multi-exon	FALSE	canonical	3	17	junction_6	22.2489943925403	96	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGACCTTTACGGATGC	NA	False	NA	NA	False	NA	NA	NA	52737500	52802824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52778743_52778813_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
17629	chr6	+	2477	9	NNC	ENSMUSG00000030327.9	novel	2476	8	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	239.978514663292	556	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTATTGGTTTTTCATC	874	False	NA	NA	False	NA	NA	NA	122851518	122865895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122851623_122852482_122852575_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
17630	chr11	+	4574	9	Antisense	novelGene_ENSMUSG00000025153.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	92	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGTGCCCAATGATGCC	NA	False	NA	NA	False	NA	NA	NA	120702838	120708936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120703678_120703786_120704857_120705295_120706619_120706708_120706788_120706864_120707563_120707671_120707873_120707946_120708085_120708297_120708405_120708817
17631	chr15	+	2947	17	Intergenic	novelGene_3321	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	7	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTACTCAGCACTTCTCA	4464	False	NA	NA	False	NA	NA	NA	79170512	79212412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_79171098_79171311_79171387_79171819_79171983_79173329_79173492_79173784_79173918_79181499_79181648_79183229_79183396_79186818_79186900_79189902_79190012_79190483_79190667_79191512_79191608_79192866_79193057_79195993_79196180_79197149_79197363_79201959_79202210_79211830_79211915_79212288
17632	chr4	-	2575	7	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	571.330732199446	2	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327205	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317308_141327150
17633	chr11	+	3907	2	NIC	ENSMUSG00000020812.19	novel	865	6	NA	NA	0	1	intron_retention	FALSE	canonical	3	182	junction_1	0	8	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTTGGTAGCATTGTGG	NA	False	NA	NA	False	NA	NA	NA	116562485	116566620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116564898_116565125
17634	chr8	+	3136	7	NIC	ENSMUSG00000031770.17	novel	1952	8	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	398	junction_6	50.3278142669527	19	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGACTGTAGCAGAGAC	NA	False	NA	NA	False	NA	NA	NA	95113122	95121975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_95113367_95115983_95116062_95116148_95116224_95117345_95117477_95118359_95118483_95118801_95120530_95121218
17635	chr4	-	2290	3	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	179	603	intron_retention	FALSE	non_canonical	0	0	junction_2	594	8	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGTCTTGGTATGAT	NA	False	NA	NA	False	NA	NA	NA	148169054	148164370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148166216_148166727_148166787_148168668
17636	chr6	-	2200	16	NIC	ENSMUSG00000029782.21	novel	1905	16	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	243.217652868098	17	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGTGTGTCACGTGTTCC	-2	True	NA	NA	False	NA	NA	NA	30509749	30481020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30481137_30482594_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
17638	chr8	+	2559	16	NIC	ENSMUSG00000001909.17	novel	2114	15	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	37	junction_1	134.875679382492	45	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85412962	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85413329_85416336_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
17639	chr19	-	2726	2	Antisense	novelGene_ENSMUSG00000065087.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAGAAAGACAA	9582	False	NA	NA	False	NA	NA	NA	8703801	8700939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8703465_8703600
17640	chr3	+	2648	20	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	13900	31027	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACCCCGGGCCGCGCCGC	9426	False	NA	NA	False	NA	NA	NA	89922321	89959779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89922524_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935682_89941368_89941485_89941961_89942006_89945674_89945773_89946121_89946324_89951006_89951118_89952160_89952238_89955075_89955213_89959766
17641	chr17	-	1242	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-216	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821664	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
17642	chr17	+	1625	5	FSM	ENSMUSG00000046711.17	ENSMUST00000119486.9	1030	5	49	-644	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	1821.9597964829	682	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	27775636	27782643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411
17643	chr14	-	3017	15	NIC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	3	12485	combination_of_known_junctions	FALSE	canonical	3	51	junction_12	77.3912667118539	61	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAGAACCATAAGTTT	NA	False	NA	NA	False	NA	NA	NA	26692417	26660597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26685603_26685664_26686815_26686915_26692357
17644	chr10	-	2437	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	-31	0	-30	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	1301	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8217	False	NA	NA	False	NA	NA	NA	128540930	128533812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
17645	chr10	-	2719	11	Antisense	novelGene_ENSMUSG00000019970.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAGAGGCGGAGATAAA	NA	False	NA	NA	False	NA	NA	NA	21875799	21854562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_21854880_21870864_21870939_21871370_21871448_21871691_21871796_21871922_21872007_21872119_21872252_21872455_21872569_21872875_21873000_21873238_21873313_21873769_21874147_21874556
17646	chr7	-	3342	12	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	141	junction_11	34.6786904344431	1	89	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9610	False	NA	NA	False	NA	NA	NA	3218925	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
17647	chr14	+	1563	3	FSM	ENSMUSG00000025290.18	ENSMUST00000225994.2	4059	3	3	2493	3	-95	multi-exon	FALSE	canonical	3	9630	junction_1	1373	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCTTCTCTCATAGCAT	NA	False	NA	NA	False	NA	NA	NA	24540788	24543433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_24540827_24541817_24541884_24541974
17648	chr8	-	3437	16	NNC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	8	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	191.230123150094	2	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATAAAGCCTTTTGTAAA	NA	False	NA	NA	False	NA	NA	NA	73228997	73214349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215200_73215279_73215466_73215592_73215688_73215829_73215947_73216020_73216132_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
17649	chr13	+	2399	7	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	9	418	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	29.584624384974	2	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAGGCCTTTGCAGTTGA	NA	False	NA	NA	False	NA	NA	NA	62277755	62321651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62318963_62319241_62319323_62319483_62319566_62320193_62320444_62320638_62320721
17650	chr4	+	1884	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181875	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	133.704483428526	404	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147394998	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147592042_147592098_147595209_147595337_147596801_147597216_147597970_147598217_147598633_147598998_147599994
17651	chr5	+	2574	17	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	132.254016952227	14	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCCTATACTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	45827262	45857466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828528_45833947_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
17652	chr15	-	1793	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	27	1	-3	-1	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGAAGTCCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	75952734	75942039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
17653	chr16	+	3039	15	Intergenic	novelGene_3602	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	17	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCGACAGGCCCGAACC	NA	False	NA	NA	False	NA	NA	NA	17469082	17540751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_17470128_17470572_17470674_17471055_17471220_17471306_17471470_17471788_17471853_17472874_17472942_17473010_17473146_17473307_17473436_17473541_17473668_17481238_17481361_17489408_17489536_17490930_17491259_17492264_17492532_17515488_17515548_17540608
17654	chr7	+	3162	23	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	51.8990795950171	74	12	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCGAGTGCCTGTGTGT	543	False	NA	NA	False	NA	NA	NA	110628201	110655579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650709_110651508_110651572_110655254
17655	chr16	-	3324	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_14	375.81810759994	1	108	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8124	False	NA	NA	False	NA	NA	NA	4867713	4831772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866177_4866218_4866613_4866651_4867669
17656	chr13	+	2937	23	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	14	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	634.859659444576	1	75	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGATACTGTGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	49859295	49887731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49859362_49860154_49860282_49861881_49861957_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885817_49885969_49887134_49887373_49887499
17657	chr18	+	2183	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-301	-73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	374.482791255814	1	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTACTGGATGGATTCTAC	7598	False	NA	NA	False	NA	NA	NA	77152602	77240740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77152694_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
17658	chr3	+	5116	18	NNC	ENSMUSG00000037643.15	novel	456	4	NA	NA	11114	-224	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	334.996565597228	2	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGAGGAGTGGACCATTT	NA	False	NA	NA	False	NA	NA	NA	31070455	31106884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_31071425_31072698_31072821_31079278_31079369_31080401_31080453_31083634_31083721_31085232_31085374_31087326_31087379_31088647_31088707_31091994_31092172_31092598_31092697_31093177_31093265_31093516_31093653_31095590_31095679_31097837_31097966_31099030_31099111_31100621_31100712_31101120_31101237_31104338
17659	chrX	-	4050	28	NIC	ENSMUSG00000031161.16	novel	4069	29	NA	NA	-34	-14	intron_retention	FALSE	canonical	3	285	junction_27	47.6136140345029	3	109	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGCTACAAAACCTGAAGA	NA	False	NA	NA	False	NA	NA	NA	7814040	7796376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
17661	chr15	-	3047	17	NNC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	211	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	57.0645194056692	1	76	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCATTGTACAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	79211953	79170429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190603_79191506_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
17662	chr19	-	2454	17	NNC	ENSMUSG00000063904.5	novel	2683	18	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	208.90300343401	6	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCAGTGTATGTTTCT	NA	False	NA	NA	False	NA	NA	NA	4978281	4957258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4957826_4959873_4960037_4963800_4963963_4964891_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
17663	chr11	+	1430	4	ISM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	22756	196	4021	-196	3prime_fragment	FALSE	canonical	3	8977	junction_3	458.095574695451	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAATGTGAAATATCCC	3877	False	NA	NA	False	NA	NA	NA	75646450	75656475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75646507_75647642_75647850_75650117_75650255_75655445
17666	chr10	+	3610	22	NNC	ENSMUSG00000002147.19	novel	768	3	NA	NA	-1021	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	72.6084769824104	908	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCTACTGTACACAATCT	1250	False	NA	NA	False	NA	NA	NA	127477833	127496830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127477929_127482759_127482897_127483553_127483693_127483974_127484059_127486564_127486704_127486821_127486875_127487025_127487175_127487818_127487951_127488059_127488249_127488853_127488942_127489075_127489199_127490794_127490888_127491165_127491373_127492792_127492888_127492976_127493114_127493424_127493572_127494065_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
17667	chr19	-	3124	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	17	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	717.407755394378	2	125	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTCCAGAGTACTGGCT	3935	False	NA	NA	False	NA	NA	NA	5345414	5323970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325165_5329277_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336677_5336837_5336977_5337096_5337313_5337562_5337653_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
17668	chr4	+	4728	15	ISM	ENSMUSG00000028572.14	ENSMUST00000030306.14	5517	22	31452	1	-3754	-1	3prime_fragment	FALSE	canonical	3	124	junction_13	15.9484181289658	113	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGTGGTTTTAGTGG	NA	False	NA	NA	False	NA	NA	NA	95886928	95913649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_95887016_95889406_95889574_95890680_95890822_95891718_95891921_95892533_95892645_95897538_95897627_95897705_95897767_95901434_95901576_95903044_95903139_95904645_95904681_95905179_95905263_95905824_95905926_95907839_95907942_95909804_95909874_95910403
17669	chr3	-	3948	28	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	398	548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	337.501422036327	1	164	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAATTACGTGAAAGAGAA	8121	False	NA	NA	False	NA	NA	NA	89955208	89906898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925727_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946182_89946324_89951006_89951118_89952160_89952239_89955076
17670	chr10	-	3542	26	NIC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	87	-1	combination_of_known_junctions	FALSE	canonical	3	151	junction_17	270.192008764138	7	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTCTTTTCCGGAGTTA	NA	False	NA	NA	False	NA	NA	NA	121462134	121425524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447459_121447578_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
17671	chr17	-	3516	21	FSM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	0	14	0	-14	multi-exon	FALSE	canonical	3	77	junction_9	11.0027269347194	190	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTGGTGACTTTGG	NA	False	NA	NA	False	NA	NA	NA	86452603	86292106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
17673	chr2	+	3621	7	FSM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	-4	887	-4	-887	multi-exon	FALSE	canonical	3	106	junction_3	28.7807806241133	250	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGATGTTTCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	157870412	157919240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
17674	chr11	+	2365	13	NNC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	21	1202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	252.968857876924	18	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCTTCATGGAAGCAGTT	NA	False	NA	NA	False	NA	NA	NA	4110375	4130621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4110551_4111045_4111168_4116495_4116576_4124028_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
17677	chr4	-	2839	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	8	-5	8	5	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	611	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTCTGTGTGATTATC	NA	False	NA	NA	False	NA	NA	NA	117039828	117016830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
17678	chr5	-	2381	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	-34	5	-34	-5	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	2044	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92583112	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
17679	chr4	-	2926	10	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	499.603571239299	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327184	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304758_141304816_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
17680	chr1	-	3289	9	FSM	ENSMUSG00000042305.13	ENSMUST00000191237.7	1689	9	-15	-1585	-3	0	multi-exon	FALSE	canonical	0	0	junction_2	283.900923519104	779	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	134289694	134273834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
17681	chr9	-	3151	6	FSM	ENSMUSG00000003131.8	ENSMUST00000214179.2	794	6	5	-2362	5	2362	multi-exon	FALSE	canonical	3	18	junction_5	143.058869001541	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGAGTCCACTGTCAT	9716	False	NA	NA	False	NA	NA	NA	45896687	45877619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896599
17682	chr11	+	2494	17	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-43	-5	intron_retention	FALSE	canonical	3	862	junction_14	82.7054024459708	9	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGACCAATTGTTAATC	NA	False	NA	NA	False	NA	NA	NA	115455307	115474727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460947_115468755_115468891_115468989_115469113_115469314_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
17683	chr7	-	3010	13	NNC	ENSMUSG00000030726.17	novel	1716	13	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	223.707584434085	552	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	99770686	99731317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99769103_99769131_99770570
17684	chr1	+	2253	5	NNC	ENSMUSG00000053332.14	novel	1614	7	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	2097.35363017303	251	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160864882_160865074_160865608_160865794_160865843_160866026
17687	chr9	+	3330	16	Antisense	novelGene_ENSMUSG00000032127.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCACGTGAACCGAAAG	4379	False	NA	NA	False	NA	NA	NA	44259424	44272956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44259880_44260199_44260423_44263893_44264069_44264209_44264407_44264509_44264649_44265128_44265295_44265398_44265591_44265707_44265872_44266278_44266448_44266995_44267148_44267524_44267725_44269363_44269614_44270434_44270597_44270903_44271046_44271138_44271246_44272519
17689	chrUn_JH584304v1	-	2295	5	Intergenic	novelGene_4623	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_4	303.306260238723	5	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCGAGAGAATGGCCAACAAT	NA	False	NA	NA	False	NA	NA	NA	59012	52202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_58563
17690	chr4	+	3812	24	Intergenic	novelGene_2151	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	29	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCCCAGGCAGCGGTCTC	4562	False	NA	NA	False	NA	NA	NA	148090426	148122998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_148091319_148093137_148093266_148093356_148093464_148095110_148095270_148095430_148095587_148097073_148097260_148098131_148098237_148098320_148098484_148098588_148098742_148098956_148099080_148101302_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105984_148107822_148107951_148108388_148108470_148108568_148108669_148110984_148111060_148113009_148113073_148113843_148113910_148122370_148122435_148122608
17691	chr6	-	2613	12	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	-10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	667.409931398182	14	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATACCTTCTGTGTTTGT	2912	False	NA	NA	False	NA	NA	NA	136805151	136790657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_136791640_136793084_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803104_136805017
17692	chr12	+	3175	8	NNC	ENSMUSG00000032705.10	novel	3310	9	NA	NA	0	-3	intron_retention	FALSE	canonical	1	5	junction_5	93.7153745581344	5	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTCAGTGATTGTAAAT	2788	False	NA	NA	False	NA	NA	NA	80509993	80544893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536249_80536368_80537554_80538005_80539315_80539673_80543554
17693	chr5	-	2199	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-40	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	573.506654410445	1	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCTCTTGCTTGTTAA	2280	False	NA	NA	False	NA	NA	NA	138170120	138162868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166650_138167151_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
17696	chr9	+	2216	23	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	184.295464354981	4	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385255	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108390996_108391091_108391172_108391551_108391594_108391741_108391835_108391944_108392077_108392172_108392233_108392305_108392432_108392994
17697	chr8	+	2741	19	FSM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	-10	6	0	0	multi-exon	FALSE	canonical	3	332	junction_8	32.668367302671	845	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACATGCCATTGTGTTGG	9618	False	NA	NA	False	NA	NA	NA	111573655	111608853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
17698	chr6	-	2605	5	NIC	ENSMUSG00000038028.10	novel	3651	6	NA	NA	26	-909	combination_of_known_splicesites	FALSE	canonical	1	30	junction_1	429.308164376127	5	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGAAATGGCAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	127086487	127062987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_127065266_127068146_127068225_127069583_127069706_127078811_127078850_127086398
17699	chr8	-	2311	2	FSM	ENSMUSG00000050052.13	ENSMUST00000210414.2	323	2	-30	-1958	20	0	multi-exon	FALSE	canonical	2	12	junction_1	0	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4834	False	NA	NA	False	NA	NA	NA	14024723	14002007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_14004136_14024540
17700	chr6	+	2168	15	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	142.276480624085	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	NA	False	NA	NA	NA	40302428	40373696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_40302465_40306426_40306534_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
17701	chr15	-	1468	4	NNC	ENSMUSG00000072235.7	novel	1803	4	NA	NA	159	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2050.41719332107	563	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	NA	False	NA	NA	NA	98851425	98847717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98848896_98849068_98849218_98849349_98849428_98851362
17702	chr7	-	2571	4	FSM	ENSMUSG00000059119.10	ENSMUST00000208282.2	661	4	-937	-973	-937	-3	multi-exon	FALSE	canonical	3	471	junction_1	233.029802576599	3	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACAAACTGAGATTGGTT	7879	False	NA	NA	False	NA	NA	NA	143079334	143067327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897
17703	chr4	-	1359	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3612.9610898451	4318	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	NA	NA	NA	119151697	119135177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151565
17704	chr7	-	3059	25	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	296.780148590202	3	69	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198252	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185180_44187463_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
17707	chr5	+	1577	2	ISM	ENSMUSG00000029304.15	ENSMUST00000112747.2	1507	6	2594	-1	2594	1	3prime_fragment	FALSE	canonical	3	6489	junction_1	0	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGGAGTCTGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	104586651	104588910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_104587413_104588094
17708	chr3	+	2831	15	NIC	ENSMUSG00000027722.15	novel	3295	16	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	116.39861577829	2	20	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	37474454	37633245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37512469_37512550_37518680_37518808_37582306_37582472_37632900
17710	chr16	+	977	7	Intergenic	novelGene_3586	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	16.9582821457049	37	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAAAATAAGTCAGAATG	NA	False	NA	NA	False	NA	NA	NA	8970703	9040874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_8970858_9010517_9010673_9032429_9032546_9036624_9036713_9038336_9038565_9040402_9040532_9040767
17711	chr16	+	3266	1	Intergenic	novelGene_3590	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGGCTCTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	9075370	9078636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_9075400_9078600
17712	chr11	-	1502	5	NNC	ENSMUSG00000016559.15	novel	2514	6	NA	NA	-2	-330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5882.00448401733	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915332	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115913951_115914113_115914362_115914450_115914605_115914707_115914846_115915204
17713	chr18	-	1569	15	Antisense	novelGene_ENSMUSG00000034484.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	121	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGTCCTCCAGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	53353577	53309525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_53309558_53322724_53322843_53327499_53327664_53330924_53330993_53331256_53331300_53332826_53332969_53336110_53336190_53342657_53342734_53343399_53343516_53343770_53343863_53345822_53346029_53349450_53349595_53351171_53351253_53351358_53351431_53353441
17714	chr6	+	3907	12	NNC	ENSMUSG00000029761.17	novel	4041	12	NA	NA	45	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	61.8884627227225	2	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTCTGTCTCGTGCAT	1350	False	NA	NA	False	NA	NA	NA	34686469	34752402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_34686633_34718723_34718836_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
17715	chr5	-	2978	16	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	347.876504268716	47	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGATCACTGGCTCTAT	NA	False	NA	NA	False	NA	NA	NA	38718960	38684155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687114_38687193_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692682_38694479_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
17716	chr2	-	2777	13	NIC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-32	-2	intron_retention	FALSE	canonical	3	902	junction_5	75.9127331582493	4	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
17717	chr15	-	899	7	FSM	ENSMUSG00000055762.17	ENSMUST00000109972.9	1624	7	37	688	0	0	multi-exon	FALSE	canonical	3	464	junction_5	1042.33482571048	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	75781146	75767336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773105_75781093
17718	chr17	-	2358	15	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	-48	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	657.005808690503	7	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAAAGTGGCTTGCCT	5692	False	NA	NA	False	NA	NA	NA	33904441	33865218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
17719	chrX	+	2699	2	ISM	ENSMUSG00000041718.17	ENSMUST00000040338.9	508	4	54	-248	54	248	intron_retention	FALSE	canonical	3	1037	junction_1	0	6	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAATGTTACTGAGATTT	NA	False	NA	NA	False	NA	NA	NA	143118918	143122245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_143119460_143120087
17722	chr2	+	1636	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11369	49	multi-exon	FALSE	non_canonical	0	0	junction_1	0	101	59	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGAGAGCAAGAGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	11413665	11426080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414601_11425317_11425596_11425657
17723	chr6	-	3001	18	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-3	-6	combination_of_known_junctions	FALSE	canonical	3	31	junction_7	73.2670141559065	493	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTGAAATGCCAAGTATC	NA	False	NA	NA	False	NA	NA	NA	146479336	146451144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456551_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
17724	chr17	-	3614	2	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	-3	intron_retention	FALSE	canonical	0	0	junction_1	0	1	92	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTATGACCTCCGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	34174637	34170980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34173444_34173486
17725	chr17	-	2585	15	NNC	ENSMUSG00000040688.17	novel	2767	21	NA	NA	5	-239	intron_retention	FALSE	non_canonical	0	0	junction_1	154.21024940129	2	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGTTGTGGGCAGGCTG	NA	False	NA	NA	False	NA	NA	NA	24926600	24920098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24920166_24920290_24920358_24920576_24921022_24921118_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924456_24924538_24924823_24924908_24925005_24925088_24925141_24926497
17727	chr11	+	3070	12	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	37	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	609.871792515267	2	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATCAGTTTTTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	109541783	109560485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544604_109544788_109550824_109551001_109551867_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255_109559203_109559455
17729	chrX	+	2262	9	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	266.27898903218	7	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6217	False	NA	NA	False	NA	NA	NA	73348872	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73351536_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
17730	chr15	+	3309	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	3	-1	3	1	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	844	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775597	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
17731	chr4	-	2563	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	212.327482912599	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726968	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697583_147697641_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726761
17732	chr9	+	3041	6	FSM	ENSMUSG00000038957.14	ENSMUST00000137245.8	4277	6	-4	1240	-4	-1240	multi-exon	FALSE	canonical	3	26	junction_2	95.7613700820952	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCTAGAGTGAAGTG	NA	False	NA	NA	False	NA	NA	NA	57615833	57657446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57615983_57620663_57620845_57634468_57634805_57647172_57647327_57651867_57652086_57655443
17733	chr6	+	3004	11	ISM	ENSMUSG00000068323.13	ENSMUST00000113899.8	5039	24	40018	0	0	0	3prime_fragment	FALSE	canonical	3	17	junction_9	149.627704653918	16	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCATGTCTAATAACTGAG	5726	False	NA	NA	False	NA	NA	NA	83254374	83281927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83277452_83277521_83280307
17735	chr8	+	2179	11	NIC	ENSMUSG00000005481.19	novel	1794	11	NA	NA	-20	2	intron_retention	FALSE	canonical	3	43	junction_5	1075.0881824297	68	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCTCCAGCCCCATC	NA	False	NA	NA	False	NA	NA	NA	84442156	84449906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
17737	chr5	+	2060	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1399.75140650045	2	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	706	False	NA	NA	False	NA	NA	NA	77099573	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099687_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114250_77114494
17739	chr10	+	2635	11	NIC	ENSMUSG00000015757.11	novel	3471	13	NA	NA	2	-572	combination_of_known_splicesites	FALSE	canonical	1	7	junction_10	80.7289291394355	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTTACTTTTTTCTT	1141	False	NA	NA	False	NA	NA	NA	7668673	7698327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7696715
17741	chr10	+	4322	26	NNC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	60.4141175554191	2	124	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGCTAGTGTGGGATTC	NA	False	NA	NA	False	NA	NA	NA	128139243	128157219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128139341_128139963_128140354_128143977_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
17742	chr17	+	3759	20	FSM	ENSMUSG00000061950.18	ENSMUST00000160664.8	3784	20	16	9	16	-8	multi-exon	FALSE	canonical	3	222	junction_1	42.2814078706415	218	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTTAGCATAAGATGGGA	NA	False	NA	NA	False	NA	NA	NA	66090376	66148908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_66090445_66090618_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
17743	chr9	-	3112	12	NIC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	-10	0	intron_retention	FALSE	canonical	3	323	junction_9	2461.98753613806	6	46	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTGTGTGGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	89996673	89973723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
17744	chr17	+	5077	20	ISM	ENSMUSG00000023809.11	ENSMUST00000024575.8	5406	21	57798	0	-3	0	3prime_fragment	FALSE	canonical	3	147	junction_18	15.2102531390512	138	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTCTGGGATAATGAG	NA	False	NA	NA	False	NA	NA	NA	7495311	7570714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_7495429_7503444_7503527_7514100_7514182_7516690_7516771_7518938_7519046_7521810_7521849_7523229_7523373_7528402_7528474_7529526_7529616_7538990_7539056_7544861_7544965_7549167_7549299_7550142_7550269_7556313_7556404_7558028_7558188_7560144_7560307_7562601_7562679_7563413_7563532_7566681_7566820_7567614
17746	chr15	-	1610	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	129	4	2	-4	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	235	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	160	False	NA	NA	False	NA	NA	NA	98832317	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
17747	chr17	+	2729	9	FSM	ENSMUSG00000024188.17	ENSMUST00000133032.8	2670	9	-62	3	26	-2	multi-exon	FALSE	canonical	3	162	junction_1	146.829354609356	99	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATATGTTTACATTAG	NA	False	NA	NA	False	NA	NA	NA	26471895	26499691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
17749	chr1	+	1821	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	502.164625620413	6	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749710_59750500
17750	chr17	+	2710	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	41	3	12	-3	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	617	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAATATTGCTGTGACTC	NA	False	NA	NA	False	NA	NA	NA	26780503	26875902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
17751	chr14	+	2732	17	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	-39	-275	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	264.356581805239	11	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTCATTGTATCACTCC	NA	False	NA	NA	False	NA	NA	NA	122344510	122396741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363573_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
17752	chr11	+	2090	13	NIC	ENSMUSG00000017421.19	novel	1562	12	NA	NA	-9	-8	combination_of_known_junctions	FALSE	canonical	3	91	junction_12	343.142695860224	599	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCAATACAGTTTTGATA	NA	False	NA	NA	False	NA	NA	NA	80274147	80287063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215_80286400_80286617
17753	chr2	+	2673	7	NIC	ENSMUSG00000027287.15	novel	2723	8	NA	NA	0	-8	combination_of_known_splicesites	FALSE	canonical	1	14	junction_2	137.170716829634	190	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTTATTCACAGACCAG	NA	False	NA	NA	False	NA	NA	NA	120398151	120431728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_120398288_120414749_120414847_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
17754	chr11	+	2518	28	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	165.622283345994	9	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTATTTTTATATCTTA	NA	False	NA	NA	False	NA	NA	NA	29080758	29111677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091744_29095432_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
17755	chr4	-	2703	8	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	533	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	556.064340720036	1	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323247	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317395_141322736_141322791_141323205
17756	chr4	+	2423	13	FSM	ENSMUSG00000034401.17	ENSMUST00000038868.14	2466	13	26	17	0	-9	multi-exon	FALSE	canonical	3	90	junction_2	15.2103309190388	164	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATATTGTAATTTTACCT	NA	False	NA	NA	False	NA	NA	NA	111577206	111686322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
17757	chr8	+	3085	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	401.783631740635	2	73	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGAGTTTTGTTAAACT	5066	False	NA	NA	False	NA	NA	NA	107329999	107396856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380400_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107390923_107395846_107396154_107396237
17758	SIRV3	+	2019	3	FSM	SIRV3A	SIRV303	2018	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	1857	junction_1	482	3	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1962	7822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4568_4780_6057
17760	chr9	-	1556	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1184	4	-41	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	14	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8284	False	NA	NA	False	NA	NA	NA	78387822	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
17761	chr4	+	2470	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	82.8322853723112	1	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAAACTGAAAGATTCA	NA	False	NA	NA	False	NA	NA	NA	146033868	146063169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146062451_146062802
17762	chr8	+	4468	20	FSM	ENSMUSG00000031511.17	ENSMUST00000074856.13	4451	20	-17	0	-17	0	multi-exon	FALSE	canonical	3	61	junction_7	14.3717944757881	132	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTTGCTTCATCTTCCTT	9611	False	NA	NA	False	NA	NA	NA	11808336	11885219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_11808518_11831154_11831240_11832524_11832656_11835712_11835915_11841455_11841545_11850459_11850555_11850772_11850869_11855200_11855324_11858715_11858855_11859516_11859577_11860250_11860398_11862596_11862684_11864942_11865022_11865160_11865301_11867659_11867885_11869637_11869732_11871959_11872050_11881492_11881593_11881894_11881950_11882969
17763	chr15	+	1510	4	NNC	ENSMUSG00000043091.10	novel	1982	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5549.42071050864	768	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	98928201	98935994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98928306_98931974_98932191_98932367_98932479_98934915
17764	chr16	+	2229	9	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	-1	-301	intron_retention	FALSE	non_canonical	0	0	junction_8	759.02103890472	1	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGACTAAAAGATATAAGT	6052	False	NA	NA	False	NA	NA	NA	22926506	22932379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930388_22931089
17765	chr8	-	5102	26	NNC	ENSMUSG00000031959.16	novel	5083	26	NA	NA	-9	6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	13.6613908515934	80	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGTACTAACACAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	112248733	112175422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216919_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
17766	chr6	+	2589	5	NIC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	608	576	intron_retention	FALSE	canonical	3	2268	junction_1	125.03074621868	3	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTTGCTGTACTGAAAA	NA	False	NA	NA	False	NA	NA	NA	88071406	88080945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_88072698_88076255_88076356_88077610_88077964_88078956_88079203_88080346
17767	chr11	+	2135	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-38	-3	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	235.082307624425	1309	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGACCAATTGTTAATCCT	NA	False	NA	NA	False	NA	NA	NA	115455312	115474729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455429_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
17769	chr16	+	2708	7	NNC	ENSMUSG00000022750.19	novel	695	2	NA	NA	-241	-6	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_1	149.069335098358	939	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAATGTGGCTACAGTCT	NA	False	NA	NA	False	NA	NA	NA	17577936	17611240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_17578119_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
17770	chr15	-	3003	15	NNC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_14	228.909047529398	14	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGTAGCTTCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	99149823	99140706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99148627
17771	chr2	+	3117	19	NNC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	1	-11	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_14	42.9149676039077	1	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCTCTCCTAAATTGTTC	NA	False	NA	NA	False	NA	NA	NA	132658061	132685804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680675_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
17772	chr3	+	1886	7	NNC	ENSMUSG00000078578.10	novel	2515	7	NA	NA	485	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1017.89009721089	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGCTGTGTTGAAGTGA	NA	False	NA	NA	False	NA	NA	NA	135145456	135172292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135145595_135160909_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
17773	chr10	+	3547	5	Antisense	novelGene_ENSMUSG00000096718.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	86	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTTTCCTCAGATTCAC	NA	False	NA	NA	False	NA	NA	NA	81738334	81766323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_81741499_81742038_81742100_81742299_81742427_81746720_81746856_81766263
17776	chr10	+	3488	5	NNC	ENSMUSG00000073427.5	novel	3330	4	NA	NA	-6	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	68.1725751310598	127	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTATGTTGTCATCCAT	NA	False	NA	NA	False	NA	NA	NA	82190082	82215476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_82190216_82204404_82204532_82204731_82204793_82211812_82211898_82212394
17777	chr13	+	2855	6	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	29	476	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	28.5278810990231	1	130	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTGTTTAAAACCAGTC	NA	False	NA	NA	False	NA	NA	NA	61952108	62009965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61952356_61974122_61974263_62005782_62005910_62006094_62006156_62007517_62008303_62008470
17778	chrX	+	1921	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	755.657869889893	131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357360	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917_139376390_139376434
17779	chr3	-	4308	30	NNC	ENSMUSG00000027933.12	novel	4337	30	NA	NA	-33	0	intron_retention	FALSE	non_canonical	0	0	junction_15	67.8358163406095	3	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGCCTGAGTTGACAT	NA	False	NA	NA	False	NA	NA	NA	90340869	90298702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309275_90309656_90309735_90310385_90310493_90310812_90310905_90311298_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318645_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
17780	chr10	+	1644	11	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	14	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3213.76686148824	15	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCCTCATTTATGTCTG	NA	False	NA	NA	False	NA	NA	NA	127919188	127926132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127919323_127919760_127919799_127919895_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
17781	chr16	-	4544	8	Antisense	novelGene_ENSMUSG00000062901.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	117	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAACATGTGACCGTC	NA	False	NA	NA	False	NA	NA	NA	19944375	19916323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_19916420_19920739_19920803_19925410_19926392_19933308_19933494_19934631_19934753_19936617_19936805_19938857_19939047_19941653
17782	chr11	+	2649	8	NIC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-11	153	intron_retention	FALSE	canonical	3	528	junction_1	58.2745087267747	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGTCTGGGCCTGCTGTC	4323	False	NA	NA	False	NA	NA	NA	102321332	102327043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324872_102324967_102325104_102325225_102325983_102326071_102326769_102326849
17783	chr9	+	3449	22	FSM	ENSMUSG00000057193.9	ENSMUST00000217461.2	3478	22	27	2	-14	1	multi-exon	FALSE	canonical	3	79	junction_1	41.7821257447013	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGACCTGGTATGCTTAA	6607	False	NA	NA	False	NA	NA	NA	21232020	21266322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
17784	chr12	+	2118	13	FSM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	10	-3	-3	3	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	5877	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTGTGATTATCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	17316605	17334774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
17785	chr2	+	2212	17	ISM	ENSMUSG00000026790.20	ENSMUST00000113757.8	3082	21	22	8556	0	0	5prime_fragment	FALSE	canonical	3	101	junction_2	297.263712625255	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7225	False	NA	NA	False	NA	NA	NA	29779828	29812551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_29779934_29782197_29782289_29783049_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
17786	chr11	-	2986	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	2	-85	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	293.968630223627	2	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGGAGTTGCTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	11758930	11750372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11753064_11756095_11756216_11758021_11758161_11758894
17787	chr11	+	4192	18	Antisense	novelGene_ENSMUSG00000032782.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCACGCATGCGCGCGGC	NA	False	NA	NA	False	NA	NA	NA	69190356	69214724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69191142_69193677_69193795_69193921_69194094_69195086_69195144_69196309_69196456_69198768_69199027_69200172_69200342_69200808_69200927_69202157_69202301_69205541_69205683_69206014_69206252_69209770_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212245_69212673_69212759_69213514
17788	chr5	+	3462	6	NNC	ENSMUSG00000029177.10	novel	1031	6	NA	NA	-9	0	intron_retention	TRUE	non_canonical	0	0	junction_1	730.376505646232	28	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9177	False	NA	NA	False	NA	NA	NA	30824231	30831730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30825491_30825654_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
17789	chr3	-	4095	5	NNC	ENSMUSG00000027845.16	novel	4345	4	NA	NA	3	0	intron_retention	FALSE	non_canonical	0	0	junction_1	31.2999600638723	63	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTATACTGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	103716638	103707920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103708415_103708542_103711372_103714709_103714893_103715387_103715554_103716215
17792	chr11	+	2192	14	NIC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	8	4	combination_of_known_junctions	FALSE	canonical	3	42	junction_11	142.282700508197	1540	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTGCTTTAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	50268553	50277359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274718_50275470_50275564_50275967_50276018_50276603
17793	chr11	+	3018	10	NNC	ENSMUSG00000059248.14	novel	647	4	NA	NA	397	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	267.934946960021	1	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTTTTCTGGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	117217655	117253138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117217887_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247250_117247438_117247536_117250244_117250297_117251248
17794	chr8	+	5782	4	NIC	ENSMUSG00000044676.11	novel	4863	5	NA	NA	-5	-16	intron_retention	FALSE	canonical	3	16	junction_1	4.98887651569859	28	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTAATAAAACTGCAGAAT	930	False	NA	NA	False	NA	NA	NA	110806372	110819357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_110806637_110809309_110810416_110810975_110811084_110815053
17795	chr2	-	2475	17	NNC	ENSMUSG00000074627.12	novel	3460	25	NA	NA	-46503	-14948	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	53	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACCCACTTGGAACCGAC	NA	False	NA	NA	False	NA	NA	NA	157167972	157120988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157121255_157125502_157125696_157131445_157131542_157132454_157132633_157136072_157136147_157137171_157137317_157139309_157139478_157141459_157141578_157144323_157144430_157152118_157152210_157154393_157154504_157156690_157156891_157158045_157158126_157159862_157159960_157162036_157162114_157163664_157163799_157167630
17796	chr18	+	1999	11	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	337.941193109097	437	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	68433435	68454978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442464_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
17797	chr17	-	3121	7	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-31	-207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	38.6522961801754	3	69	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGGATTTGATAAACTG	NA	False	NA	NA	False	NA	NA	NA	22181476	22146147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160757_22160832_22172868_22173052_22180268_22180320_22181234
17798	chr6	-	4358	5	FSM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	145	0	145	0	multi-exon	FALSE	canonical	3	260	junction_4	17.7552809045647	442	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAGATGATTATTTTT	NA	False	NA	NA	False	NA	NA	NA	100264301	100205525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443_100263570_100264206
17799	chr2	+	1764	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	298	708	-35	-708	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGTCGTTTTTTTCCCC	NA	False	NA	NA	False	NA	NA	NA	121244553	121268460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
17801	chr17	+	415	4	NNC	ENSMUSG00000046711.17	novel	584	5	NA	NA	-3	-1113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1773.09152486711	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCACAGCTCCAGGGAGG	NA	False	NA	NA	False	NA	NA	NA	27775623	27780438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778678_27779901_27779986_27780340
17803	chr13	+	2167	10	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-9	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	818.879013961264	1	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACTCTTGGTATTGAGT	NA	False	NA	NA	False	NA	NA	NA	3588118	3615816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3599012_3604371_3604547_3606313_3606513_3606925_3607058_3609997_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
17804	chr12	-	2905	14	Antisense	novelGene_ENSMUSG00000021076.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2118	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGGCGGGGTCCTCACAA	4958	False	NA	NA	False	NA	NA	NA	71010629	70984662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_70984806_70987571_70987643_70989030_70989113_70990179_70990296_70994229_70994332_70996475_70996546_70999723_70999803_71001391_71001426_71003043_71003125_71003371_71003446_71004803_71004886_71006612_71006815_71008638_71009568_71009789
17805	chr4	+	5437	10	ISM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	29	3	4	-3	intron_retention	FALSE	canonical	3	99	junction_1	27.3242984164391	8	121	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGTGGCAGCCTTGGT	NA	False	NA	NA	False	NA	NA	NA	115696423	115736444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816
17806	chr11	+	2174	11	FSM	ENSMUSG00000034285.16	ENSMUST00000136552.8	1566	11	-24	-584	24	1	multi-exon	FALSE	canonical	0	0	junction_1	513.053808094239	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4823974	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4824104_4832900_4833172_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
17807	chrX	+	2140	10	NNC	ENSMUSG00000031007.3	novel	2324	9	NA	NA	3	-259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	444.85247936261	32	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGTGTTATTTCACCAG	NA	False	NA	NA	False	NA	NA	NA	12454042	12483029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_12454175_12460999_12461131_12462394_12462527_12462864_12462943_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
17808	chr3	+	3485	6	FSM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	25	709	-7	-709	multi-exon	FALSE	canonical	3	936	junction_4	66.9489357645064	2247	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAACCCGGTGTCTCCCCT	4020	False	NA	NA	False	NA	NA	NA	88232354	88237911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88232509_88232983_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
17809	chr6	+	3287	24	FSM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	-45	-5	-45	5	multi-exon	TRUE	canonical	2	108	junction_8	52.5929548855327	172	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCATATTCTTTGCAAT	128	False	NA	NA	False	NA	NA	NA	49372492	49446440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
17811	chrX	-	3087	22	Antisense	novelGene_ENSMUSG00000031262.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCGCGCATGCGCCTCGG	NA	False	NA	NA	False	NA	NA	NA	133263388	133208906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_133208974_133209310_133209381_133209473_133209594_133210885_133211120_133212737_133212877_133218358_133218477_133218771_133218879_133225506_133225558_133225838_133225886_133236832_133236922_133237257_133237388_133237959_133238119_133238349_133238471_133239499_133239593_133240579_133240698_133243821_133243920_133247974_133248107_133249905_133250032_133251813_133251863_133251991_133252211_133261961_133262005_133262631
17812	chr9	+	2618	20	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGCCCGGCGCATTTCAA	NA	False	NA	NA	False	NA	NA	NA	61826893	61854058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61826974_61827155_61827239_61828299_61828529_61831913_61832093_61832250_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61842662_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
17813	chr10	+	6602	23	FSM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	-62	7	-62	1	multi-exon	FALSE	canonical	3	66	junction_12	11.5498381084143	64	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGCATTTTCATGACTAC	NA	False	NA	NA	False	NA	NA	NA	58091256	58141414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788_58103894_58105083_58107529_58108154_58108228_58110557_58110659_58110757_58110857_58112399_58112520_58114608_58114774_58116413_58116519_58117178_58117342_58121764_58121866_58121954_58122033_58122963_58123102_58124454_58124577_58126121_58126299_58128386_58128605_58130532_58130728_58131909_58132062_58134485_58134688_58139915
17815	chr8	-	3664	22	FSM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	131	2	6	0	multi-exon	FALSE	canonical	3	142	junction_11	12.9206544206397	8	55	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTCATGTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	12722117	12664278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
17816	chr3	+	300	2	Antisense	novelGene_ENSMUSG00000040943.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCTTTCTAACAAATCCTA	NA	False	NA	NA	False	NA	NA	NA	133244667	133250008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_133244922_133249962
17817	chr18	+	4053	7	NNC	ENSMUSG00000033107.7	novel	1406	6	NA	NA	221	3480	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	45.1811169996198	143	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTCATTAAAATGTTCAC	1440	False	NA	NA	False	NA	NA	NA	21094749	21120399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155_21116844_21117593
17818	chr6	+	1356	7	NNC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	145	574	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	925.412520627062	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTTGCTGTACTGAA	NA	False	NA	NA	False	NA	NA	NA	88070943	88080943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88070978_88072504_88072698_88076255_88076327_88077654_88077750_88077843_88077964_88078956_88079203_88080346
17819	chr7	-	2239	12	FSM	ENSMUSG00000030741.16	ENSMUST00000032994.15	2219	12	-27	7	-27	0	multi-exon	FALSE	canonical	3	348	junction_9	48.6508899292612	1147	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976649	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
17820	chr8	+	3637	13	NNC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	111.088647034699	9	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTATCAGTTCCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	117648460	117668240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117655711_117656827_117657078_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
17821	SIRV6	+	1978	1	FSM	SIRV6A	SIRV603	1969	1	-9	0	-9	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1051	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	NA	NA	NA	8990	10968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_9000_11000
17822	chr2	+	2688	7	NNC	ENSMUSG00000018326.10	novel	3013	6	NA	NA	224	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	549.444391079651	19	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	NA	False	NA	NA	NA	163837103	163860508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_163837155_163837255_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
17823	chr10	-	2028	4	Antisense	novelGene_ENSMUSG00000009291.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAGAGACCGGCATCG	NA	False	NA	NA	False	NA	NA	NA	77434560	77425468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_77425576_77428678_77428858_77429701_77429744_77432860
17824	chr13	+	2597	8	Antisense	novelGene_ENSMUSG00000021484.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCCTCGGCCGCCATT	NA	False	NA	NA	False	NA	NA	NA	55493124	55510383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_55494851_55496127_55496222_55498968_55499080_55499188_55499355_55499523_55499603_55500757_55500877_55509933_55510055_55510202
17825	chr6	+	2424	8	FSM	ENSMUSG00000030327.9	ENSMUST00000032477.6	2476	8	52	0	-23	0	multi-exon	FALSE	canonical	3	520	junction_7	29.158959137102	788	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTTTTCATCTTTTA	840	False	NA	NA	False	NA	NA	NA	122851484	122865900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
17826	chr9	+	3236	10	FSM	ENSMUSG00000006673.15	ENSMUST00000112155.9	3040	10	-23	-173	0	2	multi-exon	FALSE	canonical	3	392	junction_1	89.886485340754	27	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1147	False	NA	NA	False	NA	NA	NA	108394285	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
17827	chr5	+	2681	5	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	20	5	intron_retention	FALSE	canonical	3	76	junction_1	184.982431598247	7	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCATACAGACGTGTGGA	NA	False	NA	NA	False	NA	NA	NA	100187946	100216624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100188133_100206998_100207101_100208832_100210135_100211617_100211742_100215657
17828	chr14	+	2564	16	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	16	-271	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	272.285748596743	17	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTATCACTCCCTGC	NA	False	NA	NA	False	NA	NA	NA	122344565	122396745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385462_122388145_122388298_122389375_122389488_122392739_122392912_122396060
17829	chr7	+	2817	9	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	-6	-8	intron_retention	FALSE	canonical	3	724	junction_4	67.9014681358216	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTCTAGAGGACTGAGT	NA	False	NA	NA	False	NA	NA	NA	63835200	63861167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
17830	chr6	-	2944	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	57.4303586420109	484	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	NA	False	NA	NA	NA	146479342	146451129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456551_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
17831	chr19	-	1743	1	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAGCACATGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	10593756	10592013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10592000_10593800
17832	chr11	+	2033	14	Antisense	novelGene_ENSMUSG00000020330.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCTCGCCTGAATTCAA	NA	False	NA	NA	False	NA	NA	NA	40598391	40624235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_40598539_40598831_40599039_40600734_40601103_40604803_40605016_40605533_40605685_40606069_40606246_40606697_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615750_40619255_40619334_40619948_40620046_40624138
17833	chr17	+	2837	13	Antisense	novelGene_ENSMUSG00000052397.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	25	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCGCTCCGCAGTCCCG	NA	False	NA	NA	False	NA	NA	NA	7005673	7050154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_7006871_7007031_7007280_7008360_7008458_7008822_7008901_7009742_7009887_7010090_7010252_7014661_7014758_7020379_7020525_7021376_7021469_7022009_7022283_7023244_7023345_7026879_7026962_7050030
17834	chr11	-	2405	15	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCTGAGACTGCCAGGG	1334	False	NA	NA	False	NA	NA	NA	50277347	50267829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50267968_50268134_50268267_50269116_50269252_50270291_50270449_50270645_50270790_50272283_50272423_50273361_50273541_50273624_50273697_50273752_50273889_50274005_50274142_50274506_50274566_50274656_50274748_50275470_50275563_50275966_50276016_50276601
17836	chr5	+	2715	3	FSM	ENSMUSG00000058558.13	ENSMUST00000140659.2	1024	3	-1695	4	298	-4	multi-exon	FALSE	canonical	3	7486	junction_1	330	4	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTTTTTCTGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	108050284	108055912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108052761_108055054_108055144_108055762
17838	chr1	-	2388	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	36	5778	0	-1	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	93	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCAGACTTAATACTTC	NA	False	NA	NA	False	NA	NA	NA	86287086	86278218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
17840	chr7	+	467	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	252	17	252	-17	multi-exon	FALSE	canonical	3	1139	junction_1	0	89	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGACTTTCTGCCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	140548204	140549721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140548352_140549401
17841	chr6	-	3248	18	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGACAAAATGAATTTG	NA	False	NA	NA	False	NA	NA	NA	37943100	37880464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37880584_37885147_37885298_37892097_37892230_37896305_37896424_37904458_37904574_37908286_37908433_37920343_37920465_37922454_37922723_37926154_37926331_37928381_37928561_37930428_37930558_37933336_37933409_37933936_37934108_37934443_37934771_37935494_37935629_37937714_37937791_37941637_37941786_37942433
17842	chr3	+	2595	4	NNC	ENSMUSG00000015749.13	novel	915	4	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	727.67086576892	4	62	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836602	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836885_95845265_95845316_95851618_95851674_95852491
17843	chr4	+	1844	7	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36449	774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.372677996249965	2	51	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145136860	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136982_145138756_145138851_145162524_145162684_145173287_145173342_145174456_145174578_145176036_145176697_145177597
17844	chr1	-	278	2	ISM	ENSMUSG00000033845.14	ENSMUST00000045689.14	497	4	8091	-114	6959	114	3prime_fragment	FALSE	canonical	3	144	junction_1	0	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAGGGAAACTTTTGTTA	9752	False	NA	NA	False	NA	NA	NA	4847830	4844544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_4844740_4847747
17845	chr11	+	2036	9	NIC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	-11	1	intron_retention	FALSE	canonical	3	1103	junction_5	71.9790551132758	3689	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4823987	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
17846	chr14	-	1312	6	NNC	ENSMUSG00000037722.9	novel	709	5	NA	NA	-30	1234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	491.592351445789	1	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGACTATATGACAAGAT	NA	False	NA	NA	False	NA	NA	NA	45626280	45617207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45618023_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
17847	chr3	-	2923	18	NNC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	-23	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	422.869903182174	1	98	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAAGCCTCTTGCGTGTG	NA	False	NA	NA	False	NA	NA	NA	104725581	104702153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707652_104707978_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711643_104725267
17848	chr3	+	2978	14	NNC	ENSMUSG00000028060.15	novel	2981	14	NA	NA	4	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	103.641736127178	306	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTGTTGTTTTTTTG	-6	True	NA	NA	False	NA	NA	NA	88593124	88620240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600379_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
17849	chr15	+	1623	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	0	114	0	-114	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	211	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCACACCCTATGCAATATC	NA	False	NA	NA	False	NA	NA	NA	103148880	103153268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
17850	chr10	-	1910	10	NIC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-16	-871	intron_retention	FALSE	canonical	3	1853	junction_9	106.858161441542	12	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8729	False	NA	NA	False	NA	NA	NA	128401819	128394507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399575_128401608
17851	chr13	-	999	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	490	-147	490	147	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAGAAAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112731128	112730129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112730100_112731100
17852	chr10	+	2758	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	-19	-6	-4	6	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	111	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAAAAATGTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	21171912	21244788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
17853	chr5	+	2830	13	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	6	551	intron_retention	FALSE	non_canonical	0	0	junction_4	286.325135699493	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTAACTTTGTGGTAAGC	NA	False	NA	NA	False	NA	NA	NA	31652102	31668754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655929_31656065_31656649_31658197_31658277_31658455_31658551_31660734_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
17854	chr4	+	4020	11	NNC	ENSMUSG00000029068.17	novel	4220	11	NA	NA	4	59	intron_retention	FALSE	non_canonical	0	0	junction_8	297.048497723857	297	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGCTGTCATTCTGGTT	4659	False	NA	NA	False	NA	NA	NA	155896979	155908819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905572_155906265_155906378_155906461_155906555_155907799
17855	chr15	+	1796	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	27	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	508.535287751881	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959405	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966096_78968393_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
17856	chr2	+	2487	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	14	4835	14	-4835	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	1199	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAACCCATTTTCCACCTG	NA	False	NA	NA	False	NA	NA	NA	153583207	153610395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
17857	chr2	-	2723	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	-15	3	2	-3	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	1	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCACAAGAAAATTTTCGT	NA	False	NA	NA	False	NA	NA	NA	156022102	155989171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
17858	chr14	-	2333	11	NNC	ENSMUSG00000042354.8	novel	1765	15	NA	NA	32	0	intron_retention	FALSE	canonical	0	0	junction_7	286.590456924162	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	30740914	30734390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735753_30736009_30736984_30737231_30737342_30738278_30738350_30738965_30739125_30739232_30739371_30739764_30739824_30740885
17859	chr7	+	2454	16	ISM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	1024	9	-582	-6	3prime_fragment	FALSE	canonical	3	3307	junction_6	392.926320489393	1974	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCAGTTGCTCATGCCTC	NA	False	NA	NA	False	NA	NA	NA	12759102	12764953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
17860	chr10	-	1909	6	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	168	2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	380.386960870112	2206	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGTGCAGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	5755432	5749157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5753074_5753210_5755258
17861	chr12	-	2137	18	Antisense	novelGene_ENSMUSG00000070166.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCACCAACACACAACTTCC	8838	False	NA	NA	False	NA	NA	NA	21364773	21336399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21336544_21340247_21340312_21341750_21341850_21343226_21343352_21345026_21345180_21346658_21346738_21347789_21347937_21350034_21350217_21351414_21351574_21352357_21352506_21355302_21355454_21356770_21356883_21357993_21358092_21358903_21358998_21360195_21360284_21362296_21362369_21363767_21363864_21364647
17862	chr16	+	3733	6	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	-21	-1	intron_retention	FALSE	non_canonical	0	0	junction_5	58.7823102642283	108	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGTCTCTAGTTATTG	NA	False	NA	NA	False	NA	NA	NA	3702501	3722632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718744_3719648
17863	chr12	+	3197	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7370	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	58.4429327540028	275	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTGGTGCCTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	81066211	81233185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_81066267_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
17864	chr2	-	2214	12	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	28	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	173.550526141429	42	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	103315442	103284346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285167_103285422_103285480_103290634_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
17865	chr11	+	2510	9	NIC	ENSMUSG00000034773.17	novel	2547	10	NA	NA	-21	-7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	108.630034405776	120	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCAGCCTCCGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	102139686	102156006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102139919_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
17866	chr6	+	2774	15	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	27	-3	intron_retention	FALSE	canonical	0	0	junction_6	213.201351605778	2	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTTGCTGTTGTGTTTTT	5464	False	NA	NA	False	NA	NA	NA	125108898	125121713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114190_125114281_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
17867	chr9	+	1116	7	NNC	ENSMUSG00000001942.9	novel	4947	10	NA	NA	6507	4722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.372677996249965	96	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCTGTGGCTCCCCTTCA	4784	False	NA	NA	False	NA	NA	NA	37560482	37565673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_37560799_37561325_37561472_37562245_37562356_37562585_37562689_37563915_37564058_37564328_37564466_37565511
17869	chr8	-	2944	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-17	4	combination_of_known_splicesites	FALSE	canonical	3	42	junction_1	80.7011756547953	415	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	73175321	73094838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73095369_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
17870	chr3	-	1933	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	4	39	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	812.15377854197	302	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTCTCTGCTGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	108352510	108333888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336854_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
17871	chr13	-	4681	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	71	7618	69	3238	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	60	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGGTTGTCCTCTATTTT	9988	False	NA	NA	False	NA	NA	NA	103911045	103885737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
17872	chr16	-	3199	17	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	-19	-28	intron_retention	FALSE	non_canonical	0	0	junction_14	390.375600383784	1	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAACAGTATTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	3895658	3857862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883240_3886119_3886203_3886526_3886886_3895556
17873	chr19	-	3311	19	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	-7	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	284.707430510084	1	115	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATACTTTAGATTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	40576835	40538759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556861_40557582_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
17874	chr7	-	2767	10	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	9	-12	intron_retention	FALSE	canonical	3	348	junction_7	46.6071048470319	18	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAATCAGACTCCTGAC	NA	False	NA	NA	False	NA	NA	NA	125976574	125969250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
17875	chr9	+	1978	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	11	-3	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_2	735.998652532004	6	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAATGAATGATGTAAT	NA	False	NA	NA	False	NA	NA	NA	54493775	54511226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54494315_54494591_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
17876	chr11	+	2923	11	NIC	ENSMUSG00000018932.10	novel	2198	12	NA	NA	2	-20	intron_retention	FALSE	canonical	3	361	junction_5	28.6532720644606	1	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60822893	60843600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_60823098_60832705_60832773_60833130_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
17877	chr13	-	4363	6	FSM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	3	0	3	0	multi-exon	FALSE	canonical	2	8	junction_3	4.81663783151692	134	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCATTATTGAGGATAGT	NA	False	NA	NA	False	NA	NA	NA	21637897	21626349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_21630000_21631955_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
17878	chr8	+	1095	1	Antisense	novelGene_ENSMUSG00000037070.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	451	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCCTCCACTTCCTCCT	5965	False	NA	NA	False	NA	NA	NA	79231897	79232992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_79231900_79233000
17879	chr16	-	2852	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	6	0	6	0	multi-exon	FALSE	canonical	3	300	junction_3	44.5146667465405	1186	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACTGTAAAAGGTTGTG	NA	False	NA	NA	False	NA	NA	NA	8490013	8476443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
17880	chr13	+	2472	22	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	3	35	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	170.857036683091	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGCTGCCCTG	1312	False	NA	NA	False	NA	NA	NA	59733210	59782601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
17881	chr1	+	2137	3	NIC	ENSMUSG00000053332.14	novel	1066	9	NA	NA	-41	0	intron_retention	FALSE	canonical	3	4541	junction_2	409.5	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160863548	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160864150_160864389_160865843_160866026
17882	chr6	-	3883	23	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-3	65	intron_retention	FALSE	non_canonical	0	0	junction_17	227.860313161484	1	137	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCATCTTATGAATAAATCA	16	True	NA	NA	False	NA	NA	NA	29609609	29540915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578588_29579515_29579696_29582164_29582309_29586036_29586194_29588021_29588108_29589036_29589229_29609359
17883	chr13	+	2862	5	ISM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	21228	7	386	-7	3prime_fragment	FALSE	canonical	3	858	junction_3	39.2897887497502	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAACAAACTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	54247115	54262354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
17886	chr5	-	3013	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	538	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	NA	NA	NA	5609524	5587453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
17887	chr13	-	1943	8	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-13	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1316.95836947824	40	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAATTCTCATTTGCCC	NA	False	NA	NA	False	NA	NA	NA	100923007	100915248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917688_100919982_100920156_100921964_100922127_100922240_100922412_100922889
17888	chr16	-	1781	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	-5	-15	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCTAAAAAAAAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	45975445	45973362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45974838_45975139
17890	chr17	+	3621	25	NIC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	-8	-2	combination_of_known_junctions	FALSE	canonical	3	160	junction_24	162.957624859962	38	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTTTCCTGGCTCCTTTG	8812	False	NA	NA	False	NA	NA	NA	35354477	35366270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35366116
17891	chr17	-	2899	8	NIC	ENSMUSG00000024097.12	novel	1991	9	NA	NA	5	-13	intron_retention	FALSE	canonical	3	130	junction_5	756.932234855449	2	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAACAAATAATCCTGAT	NA	False	NA	NA	False	NA	NA	NA	80514727	80507521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512050_80512868_80513276_80513458_80514603
17892	chr9	-	4323	22	FSM	ENSMUSG00000032480.18	ENSMUST00000199529.5	4373	22	50	0	2	0	multi-exon	FALSE	canonical	3	162	junction_20	127.405044450657	1	150	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109946451	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944651_109946425
17893	chr9	+	1855	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-54	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	607.891766682195	3	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAATTTCCTGTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	108183583	108215128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208140_108212279_108212381_108213846
17894	chr2	+	5247	25	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	81.7663401100966	1	192	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCTCTGTGCCCTGCCT	4671	False	NA	NA	False	NA	NA	NA	18069475	18217197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18069676_18069845_18070006_18075935_18076016_18087321_18087537_18097594_18097646_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
17895	chr17	+	2998	17	NNC	ENSMUSG00000097119.3	novel	437	3	NA	NA	-41697	-2557	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCTGCAACCTTAAGACT	3242	False	NA	NA	False	NA	NA	NA	45702826	45744560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45703231_45703918_45704132_45715519_45715720_45718723_45718958_45719254_45719342_45721698_45721867_45722754_45722917_45723452_45723561_45724047_45724213_45726500_45726664_45727867_45728018_45730526_45730739_45735419_45735503_45736766_45736905_45737444_45737604_45738860_45738968_45744315
17896	chr3	-	2885	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	70	2	0	-2	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	11	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTTTTCTGTAATT	2786	False	NA	NA	False	NA	NA	NA	65299974	65287077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
17897	chr2	+	4552	25	Antisense	novelGene_ENSMUSG00000034032.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	154	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGACTGGCACTTCCGCCG	135	False	NA	NA	False	NA	NA	NA	119594445	119617993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_119594923_119595023_119595091_119595223_119595399_119597974_119598732_119599735_119599874_119600059_119600214_119600367_119600457_119600850_119600914_119601383_119601573_119601676_119601834_119602218_119602380_119602971_119603142_119603619_119603753_119603869_119604053_119604270_119604439_119604597_119604704_119605433_119605533_119605776_119605893_119607146_119607381_119608601_119608814_119610529_119610656_119613124_119613219_119613563_119613713_119614214_119614448_119617891
17898	chr11	-	2466	15	NNC	ENSMUSG00000020717.20	novel	2977	16	NA	NA	-9018	-7	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	471.83922049783	1	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCAGGGTCTGCT	406	False	NA	NA	False	NA	NA	NA	106615238	106552629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106552851_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
17899	chr15	+	2018	20	FSM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	35	1246	8	17	multi-exon	FALSE	canonical	1	369	junction_14	161.21684095061	2410	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	NA	False	NA	NA	NA	89239973	89255783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
17901	chr8	-	3011	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-11	4	combination_of_known_junctions	FALSE	canonical	3	33	junction_2	86.0488161471765	417	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	73175315	73094838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73095369_73099809_73100016_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
17902	chr11	-	2190	16	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_13	322.848667679181	84	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	35725352	35699207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35720909_35720972_35723998_35724134_35725263
17903	chr8	+	2575	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	86	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	426.619872433945	1	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTGAATACAAGGTT	NA	False	NA	NA	False	NA	NA	NA	75836337	75854326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836719_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
17904	chr5	-	2842	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.640803518458	3	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTCTGTTCCTAATGTT	NA	False	NA	NA	False	NA	NA	NA	5609477	5587451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5589452_5592373_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605384_5606064_5606157_5607212_5607407_5609432
17905	chr7	+	3847	7	NNC	ENSMUSG00000030523.19	novel	366	4	NA	NA	960	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	302.022304180043	1	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCTTCTAGAGGACTGA	NA	False	NA	NA	False	NA	NA	NA	63849969	63861165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63850796_63850981_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
17906	chr2	-	3049	9	NNC	ENSMUSG00000026878.18	novel	3081	8	NA	NA	-27	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	452.64997514636	1	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATAGTTGCATTATTTT	9663	False	NA	NA	False	NA	NA	NA	35091021	35070219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35080756_35080839_35081523_35081578_35082632_35082692_35090771
17907	chr4	+	3080	11	NNC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	-5	intron_retention	FALSE	canonical	0	0	junction_3	84.5085202805019	3	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGAGTTGTTGAGGTCA	8292	False	NA	NA	False	NA	NA	NA	156194475	156211715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194631_156198345_156198459_156200879_156201103_156201172_156201306_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
17908	chr15	+	3056	11	ISM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	25	-43	25	0	intron_retention	FALSE	canonical	3	528	junction_1	49.104073150809	526	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7162	False	NA	NA	False	NA	NA	NA	85743970	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736
17910	chr12	-	2220	18	Antisense	novelGene_ENSMUSG00000070166.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCGGCCCTCCAACTTC	8840	False	NA	NA	False	NA	NA	NA	21364771	21336356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21336546_21340248_21340312_21341750_21341850_21343226_21343352_21345026_21345207_21346645_21346738_21347789_21347937_21350034_21350217_21351414_21351574_21352357_21352506_21355302_21355454_21356770_21356883_21357993_21358092_21358903_21358998_21360195_21360284_21362296_21362369_21363767_21363865_21364647
17911	chr15	+	3484	12	NIC	ENSMUSG00000022471.15	novel	2114	13	NA	NA	26	-11	intron_retention	FALSE	canonical	3	583	junction_6	63.4240614455424	29	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTAACTTTATACTGTGC	NA	False	NA	NA	False	NA	NA	NA	81900595	81924274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81915464_81919877_81919979_81921657_81921772_81923922
17912	chrX	+	1896	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	22	406	22	-406	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATCTGTAGACTATTATA	NA	False	NA	NA	False	NA	NA	NA	12454061	12482882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
17913	chr9	-	4079	23	FSM	ENSMUSG00000032480.18	ENSMUST00000200066.5	4623	23	543	1	-8	-1	multi-exon	FALSE	canonical	3	18	junction_22	161.847475642658	1	152	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGCTGCTGTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	109945860	109913391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109945745
17914	chr8	+	2794	10	ISM	ENSMUSG00000005481.19	ENSMUST00000127505.8	1927	11	3177	5	-1168	-5	3prime_fragment	FALSE	canonical	3	43	junction_4	988.342383320005	2	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGAATGCATGGCTCCA	NA	False	NA	NA	False	NA	NA	NA	84445073	84449898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
17917	chr4	-	2487	13	NIC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-28	-8	combination_of_known_splicesites	FALSE	canonical	3	24	junction_10	276.521347377658	3	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTAAATGGGCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	132080944	132059241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132075310_132075432_132079432_132079555_132079973_132080010_132080907
17918	chr15	-	1687	13	NIC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	2670	0	intron_retention	FALSE	canonical	0	0	junction_11	145.168556244878	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	1627	False	NA	NA	False	NA	NA	NA	102255845	102246690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102255112_102255205_102255470
17920	chr8	+	2855	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	9	-5	9	4	multi-exon	TRUE	canonical	3	174	junction_5	34.038693468775	480	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTCTCCAGTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	87350680	87443264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
17921	chr11	+	3595	25	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	-38	30185	at_least_one_novel_splicesite	TRUE	canonical	3	225	junction_24	67.5794671109502	131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTATGTTTTGTCATAAT	1878	False	NA	NA	False	NA	NA	NA	87017864	87141694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
17923	chr5	+	3264	18	NNC	ENSMUSG00000000600.16	novel	3188	18	NA	NA	-34	81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.7636478983604	247	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAAGATGGGTTTCCTTG	7951	False	NA	NA	False	NA	NA	NA	3853149	3891440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_3853525_3854302_3854435_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
17924	chr19	-	3200	5	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	-3	intron_retention	FALSE	canonical	3	38	junction_4	623.272562768489	2	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATAGCTTGTCTGGAACT	6567	False	NA	NA	False	NA	NA	NA	4062665	4057505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4058130_4058342_4058510_4058593_4058807_4059343_4061425_4062550
17925	chr3	-	1834	2	Genic_Genomic	ENSMUSG00000069083.5	novel	1590	1	NA	NA	-58	250	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAAATGTGA	NA	False	NA	NA	False	NA	NA	NA	25266827	25264929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_25266443_25266506
17926	chr11	+	3048	16	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-27	-1	intron_retention	FALSE	canonical	3	862	junction_13	80.812100304073	272	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCAATTGTTAATCCTAC	NA	False	NA	NA	False	NA	NA	NA	115455323	115474731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
17927	chr11	+	3422	2	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-2400	-17540	intron_retention	FALSE	canonical	3	1774	junction_1	0	180	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	7031	False	NA	NA	False	NA	NA	NA	88858677	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88861306_88863446
17928	chr5	-	1865	8	Antisense	novelGene_ENSMUSG00000029247.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACAGGATCAGAGGGCGG	NA	False	NA	NA	False	NA	NA	NA	77115349	77099599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77099677_77104386_77104588_77107158_77107339_77108954_77109135_77109237_77109352_77110271_77110367_77112299_77112461_77114492
17929	chr9	-	1799	14	NNC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	2686.63749941343	3	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAAGAGATTGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	89996775	89973728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588_89996656_89996734
17930	chr5	+	2611	6	NNC	ENSMUSG00000029581.15	novel	2157	6	NA	NA	7	-4	intron_retention	FALSE	non_canonical	0	0	junction_5	1109.30194266485	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGGCCCGTGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	142946104	142958934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650_142957956_142958006
17931	chr11	-	2135	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1169.63592091727	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677780_106679172
17932	chr8	-	5528	16	NNC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	10	-28	intron_retention	FALSE	non_canonical	0	0	junction_12	52.0789998197183	1	180	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATTAAATATCATATTG	NA	False	NA	NA	False	NA	NA	NA	84467788	84450020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84450532_84450607_84450707_84450820_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84455070_84455685_84455764_84455885_84455933_84456010_84458345_84459528_84460196_84460637_84460755_84460924_84460982_84467735
17933	chr9	-	798	1	ISM	ENSMUSG00000046111.19	ENSMUST00000217407.2	6154	3	4135	2141	-2114	-2057	mono-exon	FALSE	NA	NA	NA	NA	NA	8	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATGGGGTCTTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	15231423	15230625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_15230600_15231400
17934	chr2	-	3249	12	NNC	ENSMUSG00000037820.16	novel	3596	13	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	57.5251292555503	23	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGTCTGCCTTGTCCTT	8876	False	NA	NA	False	NA	NA	NA	157988286	157958322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157959733_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250_157973429_157974348_157974478_157976170_157976290_157980626_157980870_157984914_157985095_157988210
17935	chr7	-	3695	13	FSM	ENSMUSG00000046179.18	ENSMUST00000058745.15	3691	13	-4	0	-4	0	multi-exon	FALSE	canonical	3	118	junction_12	14.9024606469312	308	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATTTTCATTTGGCC	NA	False	NA	NA	False	NA	NA	NA	48530793	48516176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_48516978_48517401_48517788_48517906_48518040_48520438_48520965_48521560_48521649_48521833_48522035_48523007_48523146_48524719_48524882_48525204_48525520_48527689_48527847_48528172_48528452_48530025_48530150_48530408
17936	chr4	-	5818	4	ISM	ENSMUSG00000066324.3	ENSMUST00000084949.3	6543	5	15077	15	15077	-15	3prime_fragment	FALSE	canonical	3	157	junction_3	6.79869268479038	257	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTGAAAAGGTTCCTAT	NA	False	NA	NA	False	NA	NA	NA	4778278	4762498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_4767973_4769311_4769474_4776313_4776410_4778192
17937	chr14	-	2918	15	NIC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	1	12464	combination_of_known_splicesites	FALSE	canonical	2	8	junction_5	88.0522803886001	10	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTACTTAAAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	26692456	26660618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
17938	chr4	-	2230	20	NNC	ENSMUSG00000040044.12	novel	3089	14	NA	NA	-7	3582	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	162.441193280024	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTGTGTGGGGTTACT	-12	True	NA	NA	False	NA	NA	NA	34614920	34567213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34567391_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
17939	chr7	-	3018	8	Antisense	novelGene_ENSMUSG00000033685.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCGAACCCGCGCCTAC	NA	False	NA	NA	False	NA	NA	NA	100148829	100142564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100142671_100143418_100144590_100145492_100146153_100146298_100146513_100147282_100147478_100147552_100147654_100147939_100148123_100148441
17940	chr7	+	3846	8	NNC	ENSMUSG00000059851.16	novel	2774	9	NA	NA	76	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	242.097804489788	2	108	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGGTTTTTTTTTTTTTT	729	False	NA	NA	False	NA	NA	NA	4743259	4750512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743627_4743751_4744981_4745120_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
17941	chr11	-	2455	12	NNC	ENSMUSG00000018593.14	novel	1304	12	NA	NA	-24	-4	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_9	307.494218181214	6	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTCCTGTCCCGGGTG	549	False	NA	NA	False	NA	NA	NA	55314033	55285329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310904_55311027_55312068_55312192_55313826
17944	chr8	-	1659	1	Antisense	novelGene_ENSMUSG00000071041.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTGAATTTTTTAAAGTA	NA	False	NA	NA	False	NA	NA	NA	100758777	100757118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_100757100_100758800
17945	chr12	-	2945	18	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-4	2	intron_retention	FALSE	canonical	2	2	junction_9	59.8365709655349	4	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	84664148	84649304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655643_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
17946	chr14	+	1963	9	NNC	ENSMUSG00000040618.8	novel	1656	9	NA	NA	-3720	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	708.154776514287	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGTTTGTTTCCACTTCCC	5171	False	NA	NA	False	NA	NA	NA	55774002	55786378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55774098_55779862_55780109_55781045_55781231_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
17947	chr9	+	630	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	16	-1	16	1	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	412	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTGTGATGTTGTC	393	False	NA	NA	False	NA	NA	NA	57428577	57439710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
17948	chr7	-	3455	7	NIC	ENSMUSG00000030722.8	novel	3388	8	NA	NA	17	-6	intron_retention	FALSE	canonical	3	215	junction_6	22.8892259953601	382	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCACTTGCTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	125995892	125982031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989916_125990442_125990567_125995113_125995187_125995527
17949	chr11	+	2450	6	NIC	ENSMUSG00000001100.11	novel	2054	11	NA	NA	12	-15	intron_retention	FALSE	canonical	3	1074	junction_4	49.354229808599	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCAGTTCTAGTCCTTCT	2940	False	NA	NA	False	NA	NA	NA	78407656	78413547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78407742_78408378_78408455_78408650_78409806_78410005_78410132_78411977_78412058_78412619
17950	chr15	-	2612	14	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	18	-3	intron_retention	FALSE	canonical	3	1461	junction_8	118.384740340815	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2779	False	NA	NA	False	NA	NA	NA	77854979	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
17951	chr2	+	2638	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	66	779	-38	-779	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	104	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCCGGCCCTTTCCTG	2774	False	NA	NA	False	NA	NA	NA	152689963	152735795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
17952	chr5	-	4491	27	FSM	ENSMUSG00000029480.14	ENSMUST00000169485.6	4760	27	-60	329	-60	-329	multi-exon	TRUE	canonical	3	122	junction_21	17.4191708985502	163	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGCTTGTCTGTCACAT	NA	False	NA	NA	False	NA	NA	NA	125511245	125491250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125492231_125492364_125492463_125492929_125493004_125493087_125493183_125493363_125493502_125493595_125493711_125494485_125494659_125495513_125495631_125495722_125495848_125496024_125496214_125496297_125496405_125498071_125498184_125499182_125499416_125499668_125499746_125500490_125500636_125501688_125501766_125502002_125502099_125502485_125502601_125502735_125502838_125503714_125503829_125504496_125504594_125505377_125505471_125506225_125506375_125506768_125507109_125507882_125507996_125508660_125508831_125510998
17953	chr15	-	3209	11	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	144	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACGCAAAGGACCCGGAT	3527	False	NA	NA	False	NA	NA	NA	102005606	101982369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982394_101990405_101990578_101997048_101997187_101997289_101997469_101998303_101998529_101999835_101999937_102001418_102001633_102002090_102002147_102003104_102003211_102003409_102003483_102003685
17954	chr9	-	3944	7	ISM	ENSMUSG00000025234.12	ENSMUST00000171975.8	6971	14	78212	1840	-2349	-1840	3prime_fragment	TRUE	canonical	3	295	junction_6	53.7824837243089	286	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATGTTTATTTTTATAG	NA	False	NA	NA	False	NA	NA	NA	59315685	59297380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_59300662_59302160_59302274_59303633_59303895_59310650_59310709_59313007_59313139_59315158_59315231_59315657
17955	chr10	+	2749	11	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	83	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	581.687579375733	1	123	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173761	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187071_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196011_128196836
17956	chr3	+	1914	11	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	2585	-350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	371.165798532138	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	NA	False	NA	NA	False	NA	NA	NA	34103365	34124121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065_34123243_34123385
17957	chr10	-	2270	11	FSM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	29	-2	29	2	multi-exon	FALSE	canonical	3	645	junction_7	42.5845042239545	61	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGGTTTTGATGAGATGT	NA	False	NA	NA	False	NA	NA	NA	13068883	13053881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
17958	chr1	+	1853	13	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	560.765374783033	12	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724138	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729738_59737471_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
17959	chr19	+	6262	40	FSM	ENSMUSG00000024773.16	ENSMUST00000045351.13	6371	40	54	55	54	-15	multi-exon	TRUE	canonical	3	75	junction_9	16.8787297726361	95	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCCCACCGCCAGCCCA	8998	False	NA	NA	False	NA	NA	NA	6291751	6312310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6291997_6294456_6294620_6294716_6294870_6295075_6295179_6295488_6295724_6296333_6296431_6296517_6296680_6296781_6296923_6297668_6297907_6297992_6298141_6298226_6298320_6299801_6299958_6300053_6300298_6300442_6300540_6300625_6300786_6301288_6301432_6301517_6301634_6301735_6301894_6302456_6302608_6302719_6302914_6303017_6303099_6303363_6303471_6303553_6303647_6304388_6304460_6304619_6304697_6305130_6305296_6305438_6305569_6305648_6305858_6306197_6306407_6306581_6306718_6307468_6307673_6307806_6307909_6307992_6308075_6308163_6308297_6308390_6308464_6308580_6308664_6308893_6309016_6310018_6310174_6311401_6311555_6311630
17960	chr1	+	2554	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	-27	2	0	-2	multi-exon	FALSE	canonical	3	145	junction_1	0	1071	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAACCTGGCTTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	155916635	155929480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_155916749_155927039
17961	chr17	-	3583	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	70	-35	-2	35	multi-exon	TRUE	canonical	3	301	junction_5	41.6619997386374	317	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCCCCCTCCTTTTTTT	3821	False	NA	NA	False	NA	NA	NA	80203482	80155783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
17964	chr16	-	2915	13	NIC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	0	2	intron_retention	FALSE	canonical	2	298	junction_3	66.6739058569559	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATATTCTTATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30406410	30380186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_30380681_30383463_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
17965	chr16	-	1130	6	NNC	ENSMUSG00000071533.12	novel	938	5	NA	NA	0	126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1033.23093256058	4	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCCTTTCCTGCGGGCA	NA	False	NA	NA	False	NA	NA	NA	55850039	55837036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55837106_55837238_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
17966	chr10	-	2157	12	NIC	ENSMUSG00000004937.7	novel	1969	12	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_11	260.894741448927	1488	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTCTGCTTCCTGTGT	4791	False	NA	NA	False	NA	NA	NA	80895993	80879908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
17967	chr19	+	2778	14	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	288.145570541151	2	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10160386	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234_10172276_10172338_10173112_10173595
17968	chr5	-	2338	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	604	20	0	-3	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	1	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTGCTTGTTAATAAC	2320	False	NA	-89	True	NA	NA	NA	138170080	138162864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
17969	chr1	+	3003	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	7	-19	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	119.25722499826	1	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAATCTGTCTTTGACA	9775	False	NA	NA	False	NA	NA	NA	175708368	175736279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721606_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
17970	chr4	+	1931	4	NNC	ENSMUSG00000028936.16	novel	2051	4	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2451.68273278216	6	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGTCACTGTGCAAGG	NA	False	NA	NA	False	NA	NA	NA	152410318	152418524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152410353_152411937_152412043_152414460_152414524_152416795
17971	chr4	+	2771	22	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	9	-3	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	155.880092297263	282	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTCTAACTTGCCTCG	3985	False	NA	NA	False	NA	NA	NA	155709348	155734392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155709399_155709641_155709797_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
17972	chr3	-	3732	20	NNC	ENSMUSG00000027889.18	novel	3586	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	77.338769828331	35	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993967	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988506_107991939_107992026_107993533_107993669_107993754
17973	chr11	+	3379	24	FSM	ENSMUSG00000020549.15	ENSMUST00000101049.9	2884	24	-25	-470	11	1	multi-exon	FALSE	canonical	3	305	junction_18	22.4427858997362	266	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGACAACAGTTTGTAC	NA	False	NA	NA	False	NA	NA	NA	64869874	64892896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
17975	chr12	+	2044	14	NNC	ENSMUSG00000073079.7	novel	4498	16	NA	NA	-48	389	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	266.196817340347	4	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2792	False	NA	NA	False	NA	NA	NA	55127262	55160065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55146723_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
17976	chr6	+	3794	13	FSM	ENSMUSG00000071337.12	ENSMUST00000095753.9	4477	13	72	611	0	-433	multi-exon	FALSE	canonical	3	90	junction_5	36.3397356744499	133	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACCTGTGGGGTCTTCTTG	9753	False	NA	NA	False	NA	NA	NA	86381272	86409776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
17977	chr2	+	2312	16	NNC	ENSMUSG00000027012.16	novel	2631	16	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	146.510826296974	3	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAACTTCTCAAATTTT	NA	False	NA	NA	False	NA	NA	NA	71042339	71093631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080126_71081255_71081331_71088427_71088569_71091165_71091292_71092991
17978	chr5	+	2871	16	NIC	ENSMUSG00000014668.16	novel	3146	18	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	89.1384441317113	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTGTTGTACTCCTGT	NA	False	NA	NA	False	NA	NA	NA	110283725	110319836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
17979	chr2	+	3304	15	ISM	ENSMUSG00000027298.18	ENSMUST00000028763.10	3989	19	5104	9	1531	4	3prime_fragment	FALSE	canonical	3	227	junction_8	20.0240926314848	1	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCAAAGCTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	119635098	119648576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
17982	chr8	-	4332	17	NNC	ENSMUSG00000019470.13	novel	4409	18	NA	NA	-4	-8	intron_retention	FALSE	non_canonical	0	0	junction_8	114.258051548895	3	97	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTGTACATCCCGGTCT	1018	False	NA	NA	False	NA	NA	NA	3671309	3660097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663166_3663500_3663589_3663710_3663798_3663951_3664244_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
17983	chr5	+	3994	24	NNC	ENSMUSG00000005907.15	novel	4555	24	NA	NA	-51	6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	18.8769771057308	3	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGACTGGAAAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	3646319	3686967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_3646518_3653231_3653376_3654837_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
17984	chr2	-	2954	5	Antisense	novelGene_ENSMUSG00000027439.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTGTCACATCGGTA	NA	False	NA	NA	False	NA	NA	NA	148534855	148526585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_148526884_148528427_148528527_148529921_148530091_148531994_148532154_148532626
17987	chr9	-	3125	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	-3	-173	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	76.2644521823023	1	24	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAAGACTTTATGGAGA	6401	False	NA	NA	False	NA	NA	NA	44272944	44259397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265327_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
17988	chr17	+	2343	13	ISM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	26	1195	0	777	intron_retention	FALSE	canonical	3	371	junction_2	29.1836855109152	5	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAACACCCTGCCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	56980383	57017569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213
17989	chr6	+	2703	4	NIC	ENSMUSG00000068328.11	novel	1265	11	NA	NA	5	0	intron_retention	FALSE	canonical	3	1074	junction_2	25.694789787469	24	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5411	False	NA	NA	False	NA	NA	NA	83031699	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83034376_83034478
17990	chr7	+	4153	28	ISM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	5512	1	5479	-1	3prime_fragment	FALSE	canonical	3	207	junction_16	25.9291532382822	2	89	15	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCGTGCCATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	35291180	35338650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
17991	chr6	+	2945	10	NNC	ENSMUSG00000029781.8	novel	549	2	NA	NA	5481	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	245.739900637711	23	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	NA	False	NA	NA	NA	56814524	56856343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_56814830_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
17993	chrM	+	1154	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	462	-71	462	71	mono-exon	FALSE	NA	NA	NA	NA	NA	12	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	12	True	NA	-97	True	NA	NA	NA	5789	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
17994	chr11	-	2836	20	NNC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-415	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	75.9397267921288	24	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGCTTCAGGATGAGC	NA	False	NA	NA	False	NA	NA	NA	117670891	117656810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117670819
17996	chr15	+	4163	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009727.12	4180	4	13	4	13	-4	multi-exon	FALSE	canonical	3	37	junction_3	626.014554321401	77	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGGGCTGTGTCACTG	NA	False	NA	NA	False	NA	NA	NA	79975557	80003698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_80000055
17997	chr7	+	2122	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	18	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	388	False	NA	NA	False	NA	NA	NA	44465824	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478429_44478713
17998	chr4	+	1830	6	NNC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	22801	5535	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGAGGGTCCAGATGGCA	NA	False	NA	79	True	NA	NA	NA	122752847	122758503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_122754011_122755726_122755867_122756193_122756281_122756415_122756539_122756692_122756881_122758374
17999	chr15	-	1614	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	2	0	-2	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	4	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	158	False	NA	NA	False	NA	NA	NA	98832319	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
18000	chr14	+	4923	35	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	2876	-8	combination_of_known_splicesites	FALSE	canonical	3	14	junction_9	216.895714261605	1	187	19	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGAAATTTTAGTTCATG	NA	False	NA	NA	False	NA	NA	NA	56643032	56762481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56730574_56730862_56737884_56738049_56741374_56741495_56743383_56743465_56745274_56745401_56746735_56746793_56749667_56749785_56751492_56751662_56753792_56753929_56759830_56760021_56761762_56761863_56762269
18001	chr8	+	2238	19	NNC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	5	-1100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	256.014660074066	8	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1911	False	NA	NA	False	NA	NA	NA	106937659	106978326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106937715_106939007_106939080_106939121_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
18002	chr17	+	2772	8	Antisense	novelGene_ENSMUSG00000023988.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	35	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCACTGAGAGATCACA	NA	False	NA	NA	False	NA	NA	NA	47911059	47922186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_47912836_47913327_47913419_47913561_47913723_47914779_47914913_47915177_47915318_47917762_47917838_47917885_47917926_47921830
18004	chr4	-	2982	8	NIC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	-8	7	intron_retention	FALSE	canonical	3	1430	junction_4	135.357425555679	42	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCATCTGCATTCACTCTG	NA	False	NA	NA	False	NA	NA	NA	124830674	124812250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_124812824_124813405_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
18005	chr17	-	2943	2	Intergenic	novelGene_146	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_1	0	1	74	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTTGTCTGTTTCTTTT	428	False	NA	NA	False	NA	NA	NA	35219175	35215703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35218446_35218974
18006	chr3	-	2309	9	FSM	ENSMUSG00000038975.15_ENSMUSG00000065463.3	ENSMUST00000196266.5	1271	9	-871	-167	3	0	multi-exon	FALSE	canonical	3	426	junction_3	203.564140690348	2860	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6157	False	NA	NA	False	NA	NA	NA	153618589	153612923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
18007	chr9	-	3272	8	NNC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	60.9305392413763	202	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATGTGATTCATGAG	-7	True	NA	NA	False	NA	NA	NA	7837045	7818228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835336_7836990
18008	chr6	-	2755	6	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	-14	-13	intron_retention	FALSE	canonical	0	0	junction_4	1207.04836688511	3	75	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294549	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83287502_83288191_83288345_83290359_83290529_83294406
18009	chr3	-	3159	6	Antisense	novelGene_ENSMUSG00000090005.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CGATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89969749	89960238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966116_89967674
18012	chr16	-	1801	14	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	28	101	intron_retention	FALSE	canonical	3	4287	junction_8	392.344266771721	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTACTGTTATGGCCGTC	NA	False	NA	NA	False	NA	NA	NA	87292648	87280774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
18013	chr10	-	2491	15	Antisense	novelGene_ENSMUSG00000001785.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	208	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCAGGCGCGGGCGCTCGC	NA	False	NA	NA	False	NA	NA	NA	85724967	85707725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_85707877_85710139_85710201_85710312_85710496_85712159_85712247_85712345_85712446_85714341_85714453_85715124_85715255_85715691_85715752_85717862_85717960_85718729_85718797_85720326_85720443_85721475_85721562_85721657_85721781_85723147_85723187_85723887
18014	chr10	-	2350	13	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	574.805619318392	1	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGTGTTCTCTTTGTG	8737	False	NA	NA	False	NA	NA	NA	128401811	128393632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394579_128394670_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
18015	chr14	+	4633	9	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	25	-485	intron_retention	FALSE	canonical	3	753	junction_1	49.7160688309122	20	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTTGCCTCTTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	62569541	62609956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_62569626_62584016_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
18016	chr7	+	2546	20	Genic_Genomic	ENSMUSG00000109168.2	novel	448	2	NA	NA	1898	19896	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	49	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTGGCGCGTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	28016220	28038194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_28016314_28016409_28016541_28016640_28016928_28017163_28017247_28018163_28018289_28018378_28018525_28019389_28019541_28019646_28019799_28021423_28021564_28021643_28021739_28021888_28021993_28023148_28023224_28023320_28023404_28025370_28025627_28028127_28028215_28028675_28028797_28029976_28030075_28030797_28030953_28037774_28037864_28038119
18017	chrUn_MU069435v1	+	377	1	Intergenic	novelGene_4781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGACCACCCAGCAGCATT	NA	False	NA	NA	False	NA	NA	NA	24271	24648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_24300_24600
18018	chr2	+	1842	5	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	12235	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	599.292499535911	33	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCTTTCTTTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	143769474	143785241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143769591_143780304_143780613_143781871_143781949_143782048_143782195_143784046
18019	chr9	-	2319	13	Intergenic	novelGene_999	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	29	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGACATCCCCTCCCCCT	NA	False	NA	NA	False	NA	NA	NA	25219858	25163943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_25164002_25176688_25176790_25188836_25188945_25197961_25198064_25199478_25199614_25204979_25205097_25207688_25207782_25209105_25209203_25210785_25210838_25212705_25212834_25215012_25215147_25217419_25217566_25218810
18020	chr18	+	1188	7	ISM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	41	17331	41	3556	5prime_fragment	FALSE	canonical	3	723	junction_3	49.3884826879934	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTCCCATGGCCTTTTC	841	False	NA	NA	False	NA	NA	NA	84952947	84982267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233
18021	chr18	+	1059	7	FSM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	2	-2	0	2	multi-exon	FALSE	canonical	3	396	junction_3	27.1871088733041	1975	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	67774670	67787234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
18022	chr7	-	2549	19	NNC	ENSMUSG00000031078.16	novel	3286	18	NA	NA	4	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	332.005377949898	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTTTGATCCATTTACT	NA	False	NA	NA	False	NA	NA	NA	144024478	143989485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143990086_143990540_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
18023	chr3	-	1574	13	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	5648	16561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCGAAGACTACCGGACG	NA	False	NA	NA	False	NA	NA	NA	32781114	32762984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32763022_32766011_32766092_32766247_32766424_32768664_32768766_32769563_32769663_32772179_32772273_32772514_32772624_32772715_32772804_32774047_32774112_32774334_32774448_32774581_32774665_32779395_32779481_32780668
18024	chr4	+	2479	9	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	267	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	189.08397605297	1683	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTCAGATGATCAGATTA	5315	False	NA	NA	False	NA	NA	NA	89055625	89099311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704_89098493_89098536
18026	chr18	-	2422	8	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	-18	-4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	524.060636778234	1928	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAAATAAAATGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	38472008	38460614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38468272_38468458_38471143_38471276_38471960
18027	chr5	+	2053	8	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	-24	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5279.91317182781	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTTCTGAGTCATCTCT	521	False	NA	NA	False	NA	NA	NA	129097311	129101384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837_129099887_129100028
18028	chr3	+	3754	9	FSM	ENSMUSG00000036580.16	ENSMUST00000044116.14	3770	9	7	9	2	2	multi-exon	TRUE	canonical	0	0	junction_4	65.469339197826	186	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGGGCCTCAGATGTAT	NA	False	NA	NA	False	NA	NA	NA	55019535	55044734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
18029	chr7	-	3990	23	FSM	ENSMUSG00000032777.10	ENSMUST00000205697.2	4066	23	68	8	-15	-8	multi-exon	FALSE	canonical	3	171	junction_20	17.5878550320413	4	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGGTTTGTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	125306864	125261137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
18030	chr10	+	4451	19	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-14815	0	intron_retention	FALSE	canonical	0	0	junction_5	129.689051195542	1	140	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTTCTCTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	25259741	25399417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25259800_25259900_25260309_25317470_25317956_25319639_25319853_25336689_25336795_25344003_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
18031	chr2	-	3263	11	NNC	ENSMUSG00000039449.15	novel	3522	10	NA	NA	1	-120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.6707053125613	7	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTAAACAAGTTACAACT	NA	False	NA	NA	False	NA	NA	NA	4656913	4626988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4629085_4629244_4629343_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
18032	chr13	-	2168	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-7	2	intron_retention	FALSE	non_canonical	0	0	junction_10	2515.67658385497	1	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATCTATTTTTGGTGGTC	4744	False	NA	NA	False	NA	NA	NA	58550337	58539771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546931_58547014_58547704_58547805_58548146_58548232_58550206
18033	chr2	+	2057	9	NNC	ENSMUSG00000026864.14	novel	2613	8	NA	NA	14	-64	intron_retention	FALSE	non_canonical	0	0	junction_8	884.378303880754	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGTGAAAAGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	34662124	34666479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562_34665847_34666320
18034	chr5	-	2758	12	NNC	ENSMUSG00000039753.17	novel	2858	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_3	155.880543371047	552	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCAATATCTTTTGTGT	8824	False	NA	NA	False	NA	NA	NA	43939496	43901965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_43902718_43908203_43908353_43915563_43915754_43915849_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
18035	chr17	+	5407	4	Intergenic	novelGene_73	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	149	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAATCTTTGGAGCAGCT	NA	False	NA	NA	False	NA	NA	NA	22930033	22958866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_22935000_22935788_22935918_22937257_22937338_22958634
18036	chr5	-	1948	13	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-4	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	614.063441121699	2	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTGTTAATAACTCTGTA	2316	False	NA	-93	True	NA	NA	NA	138170084	138162858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166191_138167162_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
18037	chr10	-	1887	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	600.992182399892	2	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCTTCTGTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	127358255	127352990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353459_127353927_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
18038	chr19	+	3193	13	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	224.133702656844	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10160395	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234_10172337_10172459
18039	chr2	+	5164	17	NNC	ENSMUSG00000008200.16	novel	4691	17	NA	NA	-54	-14	intron_retention	FALSE	canonical	0	0	junction_3	94.5401493744853	174	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAGCTGTTAAAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	90575893	90611351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90576171_90577039_90577133_90581411_90581553_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598196_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
18041	chr10	-	3370	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	-65	2	-35	-2	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	504	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCACAGAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	127047489	127032937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
18042	chr6	+	2773	14	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_6	294.646694460014	1	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5439	False	NA	NA	False	NA	NA	NA	125108873	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125114190_125114300_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117759_125117843_125117998_125118466_125120963
18043	chr3	+	2833	6	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	660.715672585417	1	81	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGACTAGCTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	95836601	95854695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845202_95852676
18044	chr4	+	2136	8	ISM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	1245	1064	-324	0	3prime_fragment	FALSE	canonical	3	1814	junction_1	386.53790373055	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	630	False	NA	NA	False	NA	NA	NA	40723724	40733900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
18045	chr1	+	1852	14	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-7	combination_of_known_splicesites	FALSE	canonical	3	10	junction_6	539.464549344996	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724146	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
18046	chr4	+	2630	20	FSM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	-38	3	-23	-3	multi-exon	TRUE	canonical	3	247	junction_2	74.7943440763884	629	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTCTAACTTGCCTCG	3924	False	NA	NA	False	NA	NA	NA	155709287	155734392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
18047	chr8	+	2953	15	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	525.712402946939	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAAGCTGTGTTTCTTG	8861	False	NA	NA	False	NA	NA	NA	120637586	120684292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663267_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321_120683940_120684224
18048	chr19	-	2409	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	1627	42	-23	-42	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	7	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGACCCTCCTATGATCA	5113	False	NA	NA	False	NA	NA	NA	53027018	52979655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
18049	chr4	-	3762	19	NNC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.180488910154	113	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGCCTGACTGTGAG	5338	False	NA	NA	False	NA	NA	NA	131802603	131650730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_131651595_131652870_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
18051	chr11	-	2153	10	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-20	intron_retention	FALSE	canonical	3	2002	junction_4	439.180831172236	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCCATTCTTTACTCTGA	9743	False	NA	NA	False	NA	NA	NA	106890290	106879474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
18052	chr6	-	2569	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	100	28	-11	-6	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	2	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTTGTCTCATGACT	NA	False	NA	NA	False	NA	NA	NA	148847865	148822560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
18053	chr4	-	3102	19	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	14	-24	intron_retention	FALSE	non_canonical	0	0	junction_9	294.374079642607	13	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCACCTAATAAAATCCTGA	2	True	NA	NA	False	NA	NA	NA	41275102	41194339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199895_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206256_41229809_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
18054	chr13	-	3743	10	FSM	ENSMUSG00000032999.11	ENSMUST00000037372.8	3527	10	-226	10	1	-1	multi-exon	FALSE	canonical	3	44	junction_9	7.43531778858738	189	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCAAGTCTACTGACTTC	NA	False	NA	NA	False	NA	NA	NA	65353756	65324934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433
18055	chr6	+	2354	12	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTGCATCAGCAGCGACT	NA	False	NA	NA	False	NA	NA	NA	144944891	145021759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144945202_144945247_144946029_144950071_144950152_144953341_144953482_144955774_144955864_144961176_144961318_144964917_144965084_144978510_144978629_144980266_144980378_144985160_144985364_144993021_144993091_145021613
18057	chr3	+	3528	21	NNC	ENSMUSG00000034349.15	novel	4316	24	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	218.191979687614	23	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	68912322	68941956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_68912424_68913408_68913547_68923413_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
18058	chr12	+	3145	28	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	21	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	278.27315827669	1	111	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCTTGGTGTTGAAAC	8047	False	NA	NA	False	NA	NA	NA	76302207	76366572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327108_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
18059	chr13	-	4005	19	ISM	ENSMUSG00000009470.18	ENSMUST00000179301.8	2503	21	-31	2053	11	-2053	5prime_fragment	FALSE	canonical	3	224	junction_18	75.1702799492879	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTACCCCCAACCCCACC	NA	False	NA	NA	False	NA	NA	NA	99027537	98987783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027434
18060	chr9	+	3017	18	Intergenic	novelGene_1037	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGACGCGAAACCAGCGT	NA	False	NA	NA	False	NA	NA	NA	53009934	53159369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010531_53028545_53028589_53060801_53060859_53068470_53068633_53071197_53071320_53115359_53115829_53118763_53118857_53120989_53121077_53124535_53124634_53134955_53135047_53136773_53136930_53140419_53140555_53145129_53145315_53146562_53146683_53147699_53147857_53149345_53149477_53151774_53151838_53159117
18062	chr4	-	1777	11	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-144	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	247.751407665022	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2	True	NA	NA	False	NA	NA	NA	129228581	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228495
18064	chr1	-	1162	5	Antisense	novelGene_ENSMUSG00000026547.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGCTCAAGACCCGG	6278	False	NA	NA	False	NA	NA	NA	172334759	172327849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_172327898_172332684_172332894_172333326_172333501_172333750_172333852_172334129
18065	chr2	+	2629	7	Antisense	novelGene_ENSMUSG00000027551.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGCCCCAAATCCCG	743	False	NA	NA	False	NA	NA	NA	168767290	168797453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_168768069_168768127_168768852_168777129_168777381_168781888_168781952_168782654_168782819_168793464_168793699_168797038
18066	chr8	-	2398	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	9	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	976.171205384702	6	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTATGTCTGTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	108315081	108307018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307952_108309013_108309944_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
18067	chr11	-	2708	10	FSM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	-21	1	-1	-1	multi-exon	FALSE	canonical	0	0	junction_5	154.822558728882	638	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7745	False	NA	NA	False	NA	NA	NA	113456606	113135679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
18068	chr12	+	4516	13	NIC	ENSMUSG00000059669.9	novel	2209	15	NA	NA	1805	3	intron_retention	FALSE	canonical	3	207	junction_3	28.5631610062098	4	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTGGAAACTTGCATTCA	NA	False	NA	NA	False	NA	NA	NA	24550433	24608541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
18069	chr15	-	3015	16	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	10.590561835899	2	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	7009	False	NA	NA	False	NA	NA	NA	98560760	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550867_98556209_98556317_98560662
18071	chr5	-	357	1	Antisense	novelGene_ENSMUSG00000096617.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCCTCAGTGTAGCCCAA	NA	False	NA	NA	False	NA	NA	NA	96010762	96010405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96010400_96010800
18072	chr4	-	3742	7	NIC	ENSMUSG00000008489.19	novel	3730	7	NA	NA	32	67	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	40.2947473830854	192	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAAAAGCCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	91260239	91138932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_91141805_91142377_91142417_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
18073	chr11	-	3510	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	160	5	-78	-5	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	113	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCTTCCCTCCCCTTTG	936	False	NA	NA	False	NA	NA	NA	120881996	120852579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
18074	chr9	-	3061	12	NNC	ENSMUSG00000032113.17	novel	3797	12	NA	NA	-1	1	intron_retention	FALSE	canonical	0	0	junction_8	131.40436612996	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGGTCCTGTATTCCT	735	False	NA	NA	False	NA	NA	NA	36637867	36620734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36631013_36633899_36633970_36634056_36634122_36635092_36635317_36637092
18075	chr11	-	2725	2	FSM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	-173	0	92	0	multi-exon	FALSE	canonical	3	1319	junction_1	0	609	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	117860185	117856904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_117859145_117859700
18077	chr16	-	2046	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	37	10	37	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	45975403	45973357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
18078	chr3	-	2991	9	NNC	ENSMUSG00000000001.5	novel	3262	9	NA	NA	240	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	147.234506824997	2	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACTTTTATTTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	108053222	108014595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023177_108025616_108025775_108030857_108031000_108031110_108031154_108053203
18080	chr2	-	1847	3	ISM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	48	4	0	-4	intron_retention	FALSE	canonical	3	1343	junction_2	31.5	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	NA	False	NA	NA	NA	25114666	25112175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25113381_25113945_25114057_25114135
18083	chr8	+	2465	9	NIC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	-9	-5	intron_retention	FALSE	canonical	3	2290	junction_7	86.1013211280756	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGAATGCATGGCTCCA	NA	False	NA	NA	False	NA	NA	NA	84441887	84449898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
18084	chr10	+	3407	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_3	52.4446973581861	82	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9110	False	NA	NA	False	NA	NA	NA	41352326	41363026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
18085	chr7	-	2463	11	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-3229	0	intron_retention	FALSE	canonical	3	712	junction_6	38.042213395122	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	126635105	126626903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919
18086	chr2	+	3076	18	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	3	-16	intron_retention	FALSE	canonical	0	0	junction_3	194.969396942045	1	51	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGTGGGCAAAGTGTT	662	False	NA	NA	False	NA	NA	NA	31462831	31507514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31485271_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
18087	chr10	-	2760	21	NNC	ENSMUSG00000040354.15	novel	3065	20	NA	NA	32	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	537.709484759196	1	93	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGTAATAAACAATGTAC	NA	False	NA	NA	False	NA	NA	NA	127147515	127132127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132481_127132725_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138761_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
18088	chr2	+	3576	20	NNC	ENSMUSG00000026790.20	novel	3807	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	478.999557596127	1	134	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7225	False	NA	NA	False	NA	NA	NA	29779828	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792190_29792354_29793332_29793456_29793987_29794120_29802579_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807780_29810822_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
18089	chr2	+	2209	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	30	185	30	-185	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCAGTACTGGTGACGA	8599	False	NA	NA	False	NA	NA	NA	72306532	72317052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
18090	chr4	-	3309	10	NNC	ENSMUSG00000043207.11	novel	3429	10	NA	NA	-4	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	89.1109725684709	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTACGTCCTGGTGTTG	NA	False	NA	NA	False	NA	NA	NA	120955442	120916440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940555_120944554_120944593_120952748_120952896_120955073
18093	chr6	-	997	1	Antisense	novelGene_ENSMUSG00000080242.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAAGCAGGGAAAAGACAA	NA	False	NA	NA	False	NA	NA	NA	37784014	37783017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37783000_37784000
18094	chr2	-	2278	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	32	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4169.46393510879	1	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTAGTGCTCCATTGCTT	3817	False	NA	NA	False	NA	NA	NA	154734670	154713338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714088_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
18095	chr7	+	2349	8	NIC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	-49	10	intron_retention	FALSE	canonical	3	3512	junction_1	340.556027935588	9	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTCTGGGGACTGTTC	NA	False	NA	NA	False	NA	NA	NA	12762002	12764972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12762706_12762807_12762915_12763014_12763052_12763133_12763523_12763602_12764134_12764215_12764303_12764381_12764520_12764615
18096	chr11	-	2196	14	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACCCTTAATCCGCAGCT	1332	False	NA	NA	False	NA	NA	NA	50277349	50268174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50268267_50269116_50269252_50270293_50270449_50270645_50270790_50272283_50272423_50273361_50273541_50273624_50273697_50273752_50273888_50274005_50274142_50274506_50274566_50274656_50274716_50275468_50275563_50275966_50276016_50276601
18097	chr3	+	3685	2	Genic_Genomic	ENSMUSG00000103464.2	novel	1511	1	NA	NA	-2316	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGGAAGATTCTGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	51008764	51012586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_51011380_51011516
18098	chr3	+	3435	10	NNC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	0	76	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	329.018330383575	2	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGTCGTCATTTTGCG	NA	False	NA	NA	False	NA	NA	NA	41510175	41561206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_41510255_41514905_41514950_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904
18099	chr10	+	2594	4	FSM	ENSMUSG00000096856.8	ENSMUST00000189672.7	4735	4	0	2141	0	989	multi-exon	FALSE	canonical	2	7	junction_1	17.4610678049451	441	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAGGCACCAGAAGAGGG	NA	False	NA	NA	False	NA	NA	NA	81484892	81501054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81485001_81497831_81497959_81498158_81498220_81498756
18100	chr6	+	4303	12	NNC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	-9	-5	intron_retention	FALSE	canonical	0	0	junction_5	53.5216029605904	2	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTTATTTCTTTGTA	9813	False	NA	NA	False	NA	NA	NA	86381332	86409157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86397394_86401328_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
18101	chrX	+	2339	14	ISM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	21	6	21	2	intron_retention	FALSE	canonical	2	666	junction_2	113.313984889764	23	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	NA	False	NA	NA	NA	154045459	154080644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576
18102	chr18	-	2582	19	Antisense	novelGene_ENSMUSG00000024542.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGTGAAGCAATGCCTA	NA	False	NA	NA	False	NA	NA	NA	68002484	67976274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_67976354_67980420_67980658_67983185_67983307_67983477_67983623_67983743_67983805_67984733_67984874_67985025_67985119_67985972_67986092_67987119_67987299_67988355_67988444_67989215_67989395_67991059_67991322_67991922_67992038_67993600_67993713_67995477_67995622_67998657_67998852_67999501_67999626_68001511_68001616_68002398
18103	chr9	+	4204	15	NNC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	-2	-440	intron_retention	FALSE	canonical	1	1	junction_12	119.564451921402	12	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGTTATTAAAATAGTGA	NA	False	NA	NA	False	NA	NA	NA	99125511	99182017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160215_99163080_99163156_99171248_99171355_99173577_99173749_99178065_99178227_99178328_99180636_99181780
18104	chr2	+	2315	16	ISM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	-46	676	-46	148	5prime_fragment	FALSE	canonical	3	1260	junction_7	141.14767680223	2	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGAGGTGCGGCAGGAATG	NA	False	NA	NA	False	NA	NA	NA	84867531	84876777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596
18105	chr6	+	4739	14	FSM	ENSMUSG00000001632.17	ENSMUST00000204626.3	4381	14	-136	-222	11	4	multi-exon	FALSE	canonical	3	36	junction_6	42.213040975537	92	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTATTTAGAATTCTTTCT	272	False	NA	NA	False	NA	NA	NA	113284137	113301806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113284531_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
18107	chr13	+	3543	1	Genic_Genomic	ENSMUSG00000005397.9	novel	NA	NA	NA	NA	306	291	mono-exon	FALSE	NA	NA	NA	NA	NA	43	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCTTTATTTTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	13683602	13687145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_13683600_13687100
18108	chr8	-	3304	7	NIC	ENSMUSG00000031591.15	novel	2154	9	NA	NA	842	-4	intron_retention	FALSE	canonical	3	1273	junction_2	31.5260033764017	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTCAGCAGTCATGCAT	NA	False	NA	NA	False	NA	NA	NA	41802232	41793701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41800113_41801124
18110	chr16	+	4060	9	NNC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	-1	-3576	intron_retention	FALSE	canonical	0	0	junction_8	30.5276514000013	79	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTGAATCCTAGAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	19916333	19944395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655_19942564_19943057
18111	chr7	-	3221	11	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	-34	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.70203301059	2	74	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAATATGACTTTATT	9570	False	NA	NA	False	NA	NA	NA	3218965	3204505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3207791_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
18112	chr1	-	1939	15	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	16	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTCCTTCTCTAAGAAT	NA	False	NA	NA	False	NA	NA	NA	59750666	59724146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724314_59729634_59729722_59731495_59731547_59735134_59735257_59737479_59737619_59740041_59740109_59741969_59742106_59743220_59743366_59743777_59743908_59744749_59744914_59745789_59745926_59746160_59746222_59748159_59748296_59749650_59749812_59750429
18113	chr9	-	3730	2	FSM	ENSMUSG00000031931.5	ENSMUST00000034406.4	1753	2	-1555	-422	3	0	multi-exon	FALSE	canonical	3	189	junction_1	0	265	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695815	14691082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_14692908_14693910
18114	chr11	+	3462	11	FSM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	46	9	-16	-9	multi-exon	FALSE	canonical	3	60	junction_7	9.20923449587424	213	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATGGCAACTCTGTATT	NA	False	NA	NA	False	NA	NA	NA	75239304	75296522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
18116	chr11	+	3400	18	NIC	ENSMUSG00000020363.7	novel	2947	19	NA	NA	-1	-25	intron_retention	FALSE	canonical	2	320	junction_9	55.0944454902255	3	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATAAAGACAGTGCAAC	NA	False	NA	NA	False	NA	NA	NA	49685012	49729415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
18117	chr15	+	1254	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	316	155	-23	-155	multi-exon	FALSE	canonical	3	1292	junction_2	43	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGAGATCCAGTATCTG	4461	False	NA	NA	False	NA	NA	NA	80139700	80141587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
18118	chr14	-	4440	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111234.10	4051	10	-202	-187	-181	26	multi-exon	FALSE	canonical	3	46	junction_9	13.3813948598441	180	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATGTGTCAAGTCAAAAT	NA	False	NA	NA	False	NA	NA	NA	61284120	61201297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
18119	chr19	-	2947	10	NIC	ENSMUSG00000024982.11	novel	2168	11	NA	NA	0	-4	intron_retention	FALSE	canonical	3	443	junction_8	56.5163583879225	17	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAAAAAGCATTGTTTTT	7441	False	NA	NA	False	NA	NA	NA	55304462	55286736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
18120	chr6	+	2128	10	NIC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	204.840377481867	1478	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	113023289	113045234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
18121	chr2	-	2344	14	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	28	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.171267646541	43	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	103315442	103284346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103284625_103284677_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
18123	chr7	-	1820	6	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	978.814670915797	37	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGTCTCACTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	117728797	117718124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117719382_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
18125	chr17	+	1545	6	NNC	ENSMUSG00000046711.17	novel	2001	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2255.93217983165	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	27775600	27782643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27782211_27782326
18126	chr17	+	3074	16	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	711.236525746221	1	103	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4860	False	NA	NA	False	NA	NA	NA	87979956	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992868_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026033_88026238_88026720_88026964_88028310_88028487_88030758
18127	chr8	+	2352	16	NIC	ENSMUSG00000001909.17	novel	2138	17	NA	NA	-1	0	intron_retention	FALSE	canonical	3	116	junction_1	116.737768809699	72	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	NA	False	NA	NA	NA	85415899	85426416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85415979_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
18130	chr17	-	3529	9	FSM	ENSMUSG00000023994.14	ENSMUST00000162460.8	3706	9	170	7	5	0	multi-exon	FALSE	canonical	3	22	junction_4	12.5492778676703	171	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTGACTGGATTTT	NA	False	NA	NA	False	NA	NA	NA	48716764	48693923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
18131	chr9	+	3247	26	FSM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	58	515	-20	0	multi-exon	FALSE	canonical	2	160	junction_17	33.744593641056	273	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAATGGTGCCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	57038031	57049491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
18133	chr19	-	3311	9	ISM	ENSMUSG00000040451.19	ENSMUST00000099514.10	3665	10	36547	3	-2649	0	3prime_fragment	FALSE	canonical	3	26	junction_7	71.9338889189233	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTGGCTATTATATTGT	NA	False	NA	NA	False	NA	NA	NA	32329365	32100129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32225393_32225437_32266940_32267032_32329344
18135	chr8	-	3700	22	ISM	ENSMUSG00000031835.17	ENSMUST00000098362.11	4336	24	11246	1	-8515	-1	3prime_fragment	FALSE	canonical	3	424	junction_17	46.5081857082007	1	108	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAAGCTGGCATGTGTCG	NA	False	NA	NA	False	NA	NA	NA	120274220	120234895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138
18136	chr13	+	2149	7	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	49	234	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	27.7213315376845	20	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATACAGAGAGAGACTGTAT	NA	False	NA	NA	False	NA	NA	NA	61952128	62009723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62008362_62008445_62008663_62008746_62009074_62009241
18137	chr19	-	2947	8	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-3	2	intron_retention	FALSE	canonical	3	1340	junction_2	88.8546164087317	31	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCTGGAACTTTGCTT	6521	False	NA	NA	False	NA	NA	NA	4062711	4057499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4061273_4061345_4061429_4062550
18138	chr1	-	1956	11	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1999.4362330417	9	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287205	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278317_86280208_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
18139	chr5	+	2025	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	0	8	0	3	multi-exon	FALSE	canonical	3	438	junction_6	59.1301389591918	1557	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGTTCGTAGTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	30360245	30389583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
18140	chr2	+	3731	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	19	5	-14	-5	multi-exon	FALSE	canonical	3	302	junction_8	34.4394597647653	374	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGCTGTGTGCAGTGTT	3984	False	NA	NA	False	NA	NA	NA	25222759	25242219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
18141	chr4	+	3429	4	Antisense	novelGene_ENSMUSG00000028693.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCCCGCGCGGTTGAGG	NA	False	NA	NA	False	NA	NA	NA	116466228	116484691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_116469279_116471526_116471608_116476066_116476200_116484526
18142	chr7	+	2940	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	0	1087	0	6	multi-exon	FALSE	canonical	3	270	junction_1	341	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCATGCTTTCTTTCTCT	271	False	NA	NA	False	NA	NA	NA	3339099	3347871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3339318_3341727_3341816_3345237
18143	chr3	-	2473	17	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	184.94221014617	3	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTATGATATTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	95763197	95737929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741566_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751670_95752354_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95757006_95757103_95758874_95759006_95760755_95760950_95763060
18144	chr19	-	3243	6	FSM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	14	5	14	-3	multi-exon	FALSE	canonical	3	81	junction_5	43.4069118920017	204	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTATGTGGCTATTATAT	8033	False	NA	NA	False	NA	NA	NA	32188399	32100132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32188227
18145	chr9	+	1804	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	9	3	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	721.870859080821	77	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCCATAATGAATGATGT	NA	False	NA	NA	False	NA	NA	NA	54493773	54511223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497205_54499444_54499547_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
18146	chr14	-	2453	12	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	-13	intron_retention	FALSE	canonical	1	1	junction_2	338.093976861586	2	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTTGCTTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	30741018	30734403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734743_30735123_30735282_30735385_30735753_30736009_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
18147	chr17	-	2805	7	NNC	ENSMUSG00000002076.13	novel	2867	8	NA	NA	4	63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	451.127630376248	6	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACATGTACTTTCGAGTT	NA	False	NA	NA	False	NA	NA	NA	32253478	32163679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32241710_32241844_32252234_32252386_32253418
18148	chr11	+	1796	13	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-5	186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1491.74911085015	4	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940644	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940786_22944268_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
18149	chr11	-	3384	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	245	298	245	-3	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	19	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGTTCTGGTTCTGTCTG	9703	False	NA	NA	False	NA	NA	NA	6150170	6055988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
18150	chr14	-	5153	23	NIC	ENSMUSG00000033644.6	novel	4916	23	NA	NA	-37	290	combination_of_known_junctions	FALSE	canonical	3	45	junction_14	9.98511288563344	57	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGATTGATTGATTT	NA	False	NA	NA	False	NA	NA	NA	70666869	70609635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666770
18152	chr3	+	2821	5	NIC	ENSMUSG00000015749.13	novel	878	5	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	806.636961402092	3	82	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	NA	False	NA	NA	NA	95836605	95854702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95836963_95844431_95844508_95845193_95845316_95851618_95851674_95852491
18153	chrX	+	2378	5	NIC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	46.06177916668	10	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAGCAGAAGGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133618736	133622646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_133618800_133619404_133619568_133619668_133619858_133620375_133620475_133620782
18154	chr18	+	3977	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	39	1461	4	944	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	922	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTTAAAACTGCATTAA	NA	False	NA	NA	False	NA	NA	NA	77031826	77061542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
18155	chr7	+	2423	4	NNC	ENSMUSG00000045411.17	novel	3610	4	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	387.494516090228	2	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTAGGGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896817_43898981_43899024_43899444_43899484_43899998
18156	chr9	+	1182	1	ISM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	14562	8341	7996	1874	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGGGCATTAGAGTGGT	NA	False	NA	NA	False	NA	NA	NA	20507182	20508364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_20507200_20508400
18157	chr5	+	2003	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-44	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1064.7410860143	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	712	False	NA	NA	False	NA	NA	NA	77099579	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114538_77114592
18158	chr2	+	2931	6	NIC	ENSMUSG00000018326.10	novel	849	4	NA	NA	45	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	598.08648204085	15	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	NA	False	NA	NA	NA	163837467	163860508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_163837792_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
18159	chr3	+	3332	17	FSM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	-416	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	114.842266146876	665	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	37474044	37633245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
18161	chr12	+	2111	10	NNC	ENSMUSG00000060073.10	novel	1027	10	NA	NA	4	0	intron_retention	FALSE	canonical	1	3	junction_5	1309.62534459664	38	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4792	False	NA	NA	False	NA	NA	NA	71021466	71041278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71034094_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
18162	chr5	+	1930	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1084.55647616895	2	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	743	False	NA	NA	False	NA	NA	NA	77099610	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114156_77114494
18163	chr3	-	2633	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	108	0	-15	0	multi-exon	FALSE	canonical	3	213	junction_2	25.8534330408942	560	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	123179649	123161945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
18164	chr15	-	3160	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	131	8	48	-6	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	1	96	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCTAACTTTGAGCTATA	NA	False	NA	NA	False	NA	NA	NA	83033454	83010184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
18165	chr10	-	1970	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-3	-177	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	577.640332877359	2	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGTTCCTATTACTGTGG	NA	False	NA	NA	False	NA	NA	NA	127358258	127353184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354712_127354798_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
18166	chrUn_JH584304v1	-	2905	4	Intergenic	novelGene_4690	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_3	157.888146061276	1	88	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATTTCACCCGTCTGCA	NA	False	NA	NA	False	NA	NA	NA	59032	53187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55702_56985_57152_58563
18167	chr5	+	3430	3	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	264	-1	intron_retention	FALSE	canonical	0	0	junction_1	99.5	378	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCTTGGTCATGCTAT	NA	False	NA	NA	False	NA	NA	NA	110071529	110091801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110071637_110088291_110088419_110088605
18168	chr14	-	2190	7	NIC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	-4	1	intron_retention	FALSE	canonical	3	1620	junction_2	1004.63055674987	9	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGAAGGAAAGACAATTT	8742	False	NA	NA	False	NA	NA	NA	52341468	52311907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52319361_52321571_52321849_52341345
18171	chr16	-	3499	5	NIC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	7	641	intron_retention	FALSE	canonical	3	5886	junction_3	242.444839087162	6	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTATTTGGAAATGCCTGA	NA	False	NA	NA	False	NA	NA	NA	95928922	95922792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_95923618_95925922_95928404_95928510_95928541_95928631_95928662_95928789
18172	chr7	+	3371	11	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	1	551	intron_retention	FALSE	canonical	3	293	junction_1	17.968027159374	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATAGCCTCTGGCTGCCCT	6869	False	NA	NA	False	NA	NA	NA	140711257	140736066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140734381_140734469_140734616_140734723_140734910_140735246
18173	chr6	+	6033	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	-37	6	-14	-6	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	206	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATTTGGGTCATCCTC	-12	True	NA	NA	False	NA	NA	NA	13069800	13089262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
18174	chr9	-	3116	14	FSM	ENSMUSG00000032418.16	ENSMUST00000034989.15	3288	14	172	0	172	0	multi-exon	TRUE	canonical	3	250	junction_5	30.9913139195733	325	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTAAATGTCATTTTTT	9782	False	NA	NA	False	NA	NA	NA	86577834	86463423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_86464961_86469015_86469115_86476496_86476671_86478108_86478252_86480771_86480878_86493905_86494020_86495593_86495692_86501777_86501888_86528363_86528468_86532920_86533083_86536695_86536772_86559916_86560067_86561871_86562006_86577725
18176	chr8	+	2608	5	NNC	ENSMUSG00000052446.18	novel	2713	4	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	174.168560595763	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72704971	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742_72722661_72722708
18177	chr7	-	1720	14	Antisense	novelGene_ENSMUSG00000051768.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.266469355010597	18	16	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGGACCTAGGTAGAAG	NA	False	NA	NA	False	NA	NA	NA	24272852	24264969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_24265118_24265641_24265714_24265808_24265926_24266283_24266385_24266455_24266570_24266738_24266998_24267234_24267350_24269638_24269737_24269873_24270000_24270290_24270350_24270437_24270574_24271630_24271724_24272475_24272553_24272647
18178	chr17	-	1990	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	1	-3	1	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906495	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
18179	chr7	-	1881	2	ISM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	15573	152	14893	-152	intron_retention	FALSE	canonical	3	541	junction_1	0	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTACGCCAACAGAGTATT	NA	False	NA	NA	False	NA	NA	NA	132162554	132159358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_132160060_132161374
18180	chrX	-	2769	1	NIC	ENSMUSG00000015290.16	novel	2442	4	NA	NA	9	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGAATCCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	73412093	73409324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_73409300_73412100
18182	chr9	+	2049	19	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	128.779551325147	1	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385258	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385704_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
18183	chr5	+	3776	6	NIC	ENSMUSG00000055991.16	novel	3794	6	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	25.9460979725276	124	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	910	False	NA	NA	False	NA	NA	NA	145141344	145158560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149406_145155096_145155694_145156862
18185	chr2	-	2732	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	6	-4	-5	0	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	416	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTGTGAATGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	114485439	114346896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
18186	chr13	-	2937	9	NNC	ENSMUSG00000035834.12	novel	3054	8	NA	NA	-22	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.9996565927586	12	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGATGATTTGCAGTGAA	NA	False	NA	NA	False	NA	NA	NA	81859097	81821963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81823325_81823404_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
18188	chr2	+	1590	16	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	4538	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	994.77762115739	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTCTCTGCGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	31364756	31410683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31388743_31388810_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
18189	chr2	-	2437	16	NNC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	17	-46	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	117.277562503092	5	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTAAGTGTATTTAATAC	NA	False	NA	NA	False	NA	NA	NA	126975857	126945792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126946192_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
18190	chr11	-	1675	10	ISM	ENSMUSG00000018428.16	ENSMUST00000107903.8	3721	11	6846	685	-159	278	3prime_fragment	FALSE	canonical	3	816	junction_2	51.9631873493743	1	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAGCAGGCAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	88735483	88722302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084
18191	chr9	-	2012	15	FSM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	56	5	-33	-5	multi-exon	FALSE	canonical	2	266	junction_13	37.3054135153468	530	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACAGGACTGGGCATGG	NA	False	NA	NA	False	NA	NA	NA	66032112	65995419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
18192	chr3	-	4170	10	FSM	ENSMUSG00000028114.17	ENSMUST00000174323.6	4202	10	30	2	-24	-2	multi-exon	FALSE	canonical	3	213	junction_1	26.0261027564896	35	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTTTGTTTTCCTTA	NA	False	NA	NA	False	NA	NA	NA	123179604	123161947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
18193	chr4	-	4050	19	NNC	ENSMUSG00000028906.18	novel	5141	18	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	40.9283098015283	15	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	131734735	131650740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_131651588_131652905_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268
18197	chr5	-	3768	6	Antisense	novelGene_ENSMUSG00000065191.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	192	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCCTGGTGCCGCCGCGC	NA	False	NA	NA	False	NA	NA	NA	123512142	123482550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_123482788_123489929_123490012_123494003_123494100_123499252_123499420_123507393_123507516_123509078
18198	chr2	+	1807	12	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	67	-708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1827.75020446377	4	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGTCGTTTTTTTCCCC	NA	False	NA	NA	False	NA	NA	NA	121244430	121268460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255132_121257088_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264577_121265269_121265428_121266863_121266896_121268066
18199	chr13	-	3441	12	FSM	ENSMUSG00000021215.16	ENSMUST00000091853.12	2680	12	11	-772	11	129	multi-exon	FALSE	canonical	3	132	junction_9	26.5501241222916	241	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTCTCCTGGTGGTTA	NA	False	NA	NA	False	NA	NA	NA	3968209	3932560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3957796_3957857_3962867_3962935_3967937
18200	chr13	-	2620	7	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	0	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.1690017226665	346	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6808	False	NA	NA	False	NA	NA	NA	62860567	62846832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848493_62848576_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62855967_62856024_62860451
18201	chr10	-	1981	12	FSM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	28	0	28	0	multi-exon	FALSE	canonical	3	1317	junction_1	96.7988457003782	3272	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	85793659	85774500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
18202	chr15	-	1190	2	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	-102710	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTTTGTTTCTGGATAC	2244	False	NA	NA	False	NA	NA	NA	98935156	98829310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830382_98935037
18203	chr2	-	3073	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	-4	1648	-4	-1648	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	277	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCCAAAGAAACTG	NA	False	NA	NA	False	NA	NA	NA	52632216	52583323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
18204	chr10	-	3795	31	FSM	ENSMUSG00000025366.9	ENSMUST00000026427.8	3981	31	-97	283	-96	8	multi-exon	FALSE	canonical	3	144	junction_22	28.253790306199	315	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGCTTCATGAACTTGCA	8222	False	NA	NA	False	NA	NA	NA	128361836	128346116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128348195_128348334_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
18205	chr1	+	2399	8	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	29.5379382475888	299	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGACTGTTCTATTTT	NA	False	NA	NA	False	NA	NA	NA	173248171	173293606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173248253_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
18206	chr1	+	2392	5	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	540.598915555701	58	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	NA	False	NA	NA	NA	180720672	180726668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014_180725771_180725851
18207	chr12	+	3040	10	FSM	ENSMUSG00000072946.13	ENSMUST00000146377.8	2073	10	5	-972	-2	-6	multi-exon	FALSE	canonical	3	10	junction_1	74.1401742114137	143	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGACTTATGACCACTTT	NA	False	NA	NA	False	NA	NA	NA	84332184	84362600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84332308_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
18208	chr13	+	1908	9	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-9	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	628.622104288419	11	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588118	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3611961_3615007
18209	chr5	-	3726	17	ISM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	36	3213	0	-3213	5prime_fragment	FALSE	canonical	3	99	junction_8	16.1201543106758	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTGGCAAAATGAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	86213406	86163095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
18210	chr11	+	1224	9	Antisense	novelGene_ENSMUSG00000020471.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACAACTTCTTCACTTC	NA	False	NA	NA	False	NA	NA	NA	5822192	5825144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_5822417_5822667_5822776_5823030_5823153_5823406_5823566_5823687_5823769_5824022_5824223_5824314_5824429_5824759_5824885_5825053
18211	chr10	+	3214	7	NIC	ENSMUSG00000040034.16	novel	1286	8	NA	NA	-9	837	intron_retention	FALSE	canonical	3	1090	junction_2	91.1496023030271	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATTTTTAAAAGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	7543257	7555482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7552127_7554331
18212	chr8	+	3539	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	51	13	8	-13	multi-exon	FALSE	canonical	3	235	junction_4	11.5881713089561	243	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGCCTTTTATATTATG	NA	False	NA	NA	False	NA	NA	NA	27532633	27546147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
18213	chr4	+	2353	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	20	3249	-3	0	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	121	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	-15	True	NA	NA	False	NA	NA	NA	40722941	40733900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
18214	chr8	-	2984	12	NIC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	-962	-8	intron_retention	FALSE	canonical	3	1149	junction_9	185.949695499074	3	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTACCCATGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	112732361	112720082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263
18216	chr4	+	2875	19	Antisense	novelGene_ENSMUSG00000028678.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGCTGCAGTTTAAATC	NA	False	NA	NA	False	NA	NA	NA	117016839	117039774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_117017580_117019206_117019516_117019799_117019868_117022338_117022452_117022556_117022757_117023505_117023654_117024079_117024170_117024245_117024310_117024490_117024580_117027029_117027195_117027281_117027337_117028913_117029012_117029483_117029583_117030798_117030918_117032081_117032205_117035116_117035167_117035341_117035444_117037768_117037868_117039630
18219	chr7	-	2813	18	NNC	ENSMUSG00000025474.10	novel	2960	18	NA	NA	37	-2	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_12	121.634912352968	1	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTTTGAGTTTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	139616138	139575882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587931_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
18221	chr6	+	1270	1	NIC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	115	-666	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGGCTGAAATTGACAAG	NA	False	NA	NA	False	NA	NA	NA	125022599	125023869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125022600_125023900
18223	chr15	-	2872	15	NIC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	1	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	8.76478342980753	3	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	7000	False	NA	NA	False	NA	NA	NA	98560769	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98560703
18224	chrX	+	2464	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	20	0	20	0	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	341	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	141011192	141022688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
18225	chr9	+	3378	27	NIC	ENSMUSG00000032295.16	novel	3820	26	NA	NA	-23	-1	combination_of_known_junctions	FALSE	canonical	2	10	junction_6	65.9648911460129	267	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTGCCTTGCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	57038028	57049496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043486_57043610_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
18226	SIRV4003	+	4001	1	FSM	SIRV4003A	SIRV4003	4001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	144	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	4001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4003_+_0_4000
18227	chr5	-	2150	8	Antisense	novelGene_ENSMUSG00000019179.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCCGCCCGGTCCAGAG	NA	False	NA	NA	False	NA	NA	NA	135820197	135807511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_135807654_135812156_135812331_135813042_135813118_135814778_135814893_135815086_135815211_135818052_135818152_135818476_135818631_135818929
18228	chr18	+	2250	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26782	30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	455.124792105296	1	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGACTAACAACAACTTC	6303	False	NA	NA	False	NA	NA	NA	77126121	77240843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185424_77207765_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
18229	chr19	+	5083	2	Antisense	novelGene_ENSMUSG00002076763.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	434	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTACAGGTGGAGGTTACAA	5592	False	NA	NA	False	NA	NA	NA	5890361	5895503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5890837_5890895
18231	chr2	+	2570	14	ISM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	47	4549	47	1349	5prime_fragment	FALSE	canonical	3	2348	junction_1	181.680420375804	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCCAGTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	31360265	31406135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690
18232	chr16	-	3104	11	NNC	ENSMUSG00000044626.14	novel	3923	10	NA	NA	-3	-660	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	74.0235773250658	4	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTGAAGGAGAAAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	21814204	21773226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794514_21794565_21794982_21795085_21800085_21800195_21802650_21803019_21814070
18233	chr10	-	3948	11	NNC	ENSMUSG00000055531.13	novel	3819	9	NA	NA	0	421	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	236.860634129017	18	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCATAGTCCCACCCAGCA	4471	False	NA	NA	False	NA	NA	NA	117212878	117189288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117191432_117191686_117191758_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
18236	chr16	+	2323	7	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-293	intron_retention	FALSE	canonical	3	675	junction_6	499.642205316298	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAATACTGTCATCTGCT	6053	False	NA	NA	False	NA	NA	NA	22926507	22931641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22928010_22928734_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
18237	chr9	-	1699	5	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1948.7037358203	8	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAACAAAATGTGAGTAGT	NA	False	NA	NA	False	NA	NA	NA	110775162	110768680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771488_110772244_110772322_110773258_110773312_110774891
18238	chr8	-	3765	13	NNC	ENSMUSG00000033658.17	novel	3104	12	NA	NA	36	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	106.240162943315	7	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGGTATTTTGTCTGCAT	NA	False	NA	NA	False	NA	NA	NA	111758347	111729817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731172_111733947_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
18239	chr6	+	2294	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	8	1331	8	586	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	6	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGAAAAATCTCTCATG	545	False	NA	NA	False	NA	NA	NA	88061471	88080955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
18240	chr17	-	3855	8	FSM	ENSMUSG00000024142.16	ENSMUST00000234686.2	3855	8	-4	4	0	-3	multi-exon	FALSE	canonical	3	68	junction_2	8.85483840989242	2	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATCAGTGTGAGGCCGAT	9618	False	NA	NA	False	NA	NA	NA	24698021	24692531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293
18241	chr10	+	2432	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	-4	1	-4	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	644	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	4382462	4405140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
18242	chrX	+	3256	4	NIC	ENSMUSG00000067860.12	novel	2980	4	NA	NA	-2405	-394	intron_retention	FALSE	canonical	2	3	junction_1	94.8343585181845	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAAAACGGTTGTTTGTT	7095	False	NA	NA	False	NA	NA	NA	57073597	57081525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_57073670_57076373_57077598_57078721_57078886_57079729
18243	SIRV7	+	2466	5	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTCTCAAATTGTTCG	NA	False	NA	NA	False	NA	NA	NA	1005	147925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_2679_2996_3111_43027_43083_114683_114993_147610
18244	chr15	+	2688	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	645.343635828617	1	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGATCCATATCTAT	NA	False	NA	NA	False	NA	NA	NA	81756708	81799311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796084_81796210_81796406_81796553_81797306_81797499_81797880_81798014_81798438_81798561_81798828
18246	chr8	+	2219	8	NNC	ENSMUSG00000031799.11	novel	2044	8	NA	NA	46	-3	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	253.461424831376	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTGTCTGGATTTATTC	NA	False	NA	NA	False	NA	NA	NA	72889697	72906981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72889989_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
18248	chr10	+	3429	4	NNC	ENSMUSG00000073427.5	novel	3330	4	NA	NA	8	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	64.0433880705538	1	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTATGTTGTCATCCAT	NA	False	NA	NA	False	NA	NA	NA	82190157	82215476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_82190317_82204404_82204532_82204731_82204793_82212394
18249	chr12	+	2559	13	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	8	2	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	281.451434038312	6	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTGTGAAGTACAATT	397	False	NA	NA	False	NA	NA	NA	109609272	109628145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109609896_109611695_109611766_109612280_109612361_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627141
18250	chr11	-	2961	10	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	52	-2	intron_retention	FALSE	canonical	3	982	junction_5	86.3547092084105	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCGTGGCTGGCAGTCA	NA	False	NA	NA	False	NA	NA	NA	96807140	96798643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802836_96803042_96803881_96804207_96804309_96804490_96804623_96806976
18251	chr1	-	2493	12	NIC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_9	304.563310195689	5	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624064	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177611614_177611684_177612461_177612565_177623777
18252	chr4	-	2326	8	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	6420	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	678.820916541833	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141317360	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141303555_141303669_141304701_141304832_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254
18253	chr2	-	1918	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	-15	2	0	-2	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	2786	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGGAGTACGTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	172212441	172198117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
18254	chr11	-	5091	13	NNC	ENSMUSG00000040620.16	novel	5184	12	NA	NA	13	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	32.2524762184584	75	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGATAAGTCTTGGTATC	NA	False	NA	NA	False	NA	NA	NA	70895233	70874925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70878254_70879892_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682_70884843_70885964_70886077_70886713_70886900_70890195_70890367_70890546_70890775_70892344_70892506_70894942_70895071_70895124
18255	chrX	+	3299	12	FSM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	47	20	-4	-20	multi-exon	FALSE	canonical	3	339	junction_9	109.675027103931	1	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGCTGTTACCTGGCA	NA	False	NA	NA	False	NA	NA	NA	158315710	158376057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
18256	chr9	+	2385	23	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	67	-5	intron_retention	FALSE	canonical	0	0	junction_7	116.471727140712	2	51	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTAAATCCCTCTGGCGT	NA	False	NA	NA	False	NA	NA	NA	108385358	108393123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388354_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
18257	chr7	-	2425	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-9	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	424.604086633051	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153802	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112914_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128247_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
18260	chr6	-	3383	13	FSM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	17	-18	0	18	multi-exon	FALSE	canonical	3	457	junction_9	27.4919180043073	1146	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAGCCTGCTGTGTTA	845	False	NA	NA	False	NA	NA	NA	51989512	51834383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
18261	chr9	+	1523	16	ISM	ENSMUSG00000032604.17	ENSMUST00000207126.2	3066	22	-12	2157	0	-184	5prime_fragment	FALSE	canonical	3	468	junction_2	27.1633740335933	2	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTGTAGCAGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	108385257	108390978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867
18262	chr7	-	3922	11	FSM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	-1	7419	-1	-150	multi-exon	FALSE	canonical	3	186	junction_1	20.7511445467473	312	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTTTTGGAAGAAAATCT	NA	False	NA	NA	False	NA	NA	NA	97958746	97863014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
18263	chr7	+	3290	5	FSM	ENSMUSG00000030649.19	ENSMUST00000032884.16	937	5	-42	-2311	-22	0	multi-exon	FALSE	canonical	3	304	junction_1	120.728000066265	2585	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTCCAGACTCCTC	7795	False	NA	NA	False	NA	NA	NA	101545592	101551056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106
18265	chr11	-	3641	10	FSM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	423	0	-1	0	multi-exon	FALSE	canonical	3	74	junction_1	26.5236907846458	236	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	NA	False	NA	NA	NA	59397047	59376345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
18266	chr2	-	929	1	ISM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	1610	4	1562	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	NA	False	NA	NA	NA	25113104	25112175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25112200_25113100
18268	chr11	-	1726	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	4	44	2	-43	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	2	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAACAAACACAAAATTCTG	NA	False	NA	NA	False	NA	NA	NA	69563139	69557805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
18269	chr17	+	2245	15	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-60	-7	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	345.584428090699	1	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATACTTGGTTCTCTAG	NA	False	NA	NA	False	NA	NA	NA	21165688	21186160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179066_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
18270	chr3	+	6380	16	FSM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	11	-4	11	4	multi-exon	FALSE	canonical	3	12	junction_15	25.5603860169078	41	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTATTATGTTTGCCTT	NA	False	NA	NA	False	NA	NA	NA	40594926	40659208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_40595159_40608135_40608684_40618689_40618776_40627000_40627205_40629655_40629775_40633312_40633403_40633961_40634040_40637786_40637977_40642205_40642260_40645125_40645189_40646144_40646367_40646928_40647400_40648590_40648689_40651913_40652104_40654068_40654227_40655631
18273	chr15	-	1258	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1369	253	1242	-253	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	2255	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGAGGACATGGCTGC	1400	False	NA	NA	False	NA	NA	NA	98831077	98829558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
18275	chr11	+	2765	10	NIC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	620	0	intron_retention	FALSE	canonical	3	883	junction_9	108.81891175506	4	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAAGGCTCCTTTCCTTT	2254	False	NA	NA	False	NA	NA	NA	120675960	120679927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
18276	chr6	+	2832	22	NNC	ENSMUSG00000030088.16	novel	3052	23	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	48.3352802798111	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	90527776	90576151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90527865_90536288_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
18277	chr1	+	2604	21	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	-8	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	191.893199462618	6	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAGCCTTGTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	45834600	45862781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856479_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861713_45862019_45862135_45862467
18279	chr2	+	3427	19	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-8	-1	intron_retention	FALSE	canonical	0	0	junction_11	94.334658412366	9	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTTGTTGTATGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	130266276	130285653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130281446_130281539_130281635_130281760_130281838_130282150_130282663_130282819_130282929_130283084_130283220_130283314_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
18280	chr11	-	1780	1	NIC	ENSMUSG00000004394.13	novel	2003	5	NA	NA	2370	-347	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTGATGTGAAATAATAG	7713	False	NA	NA	False	NA	NA	NA	6222495	6220715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6220700_6222500
18282	chr1	-	5832	11	NIC	ENSMUSG00000089872.11	novel	3995	15	NA	NA	7	-5	intron_retention	FALSE	canonical	3	35	junction_3	5.54616984954482	35	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCAAACGGCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	190643959	190528270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
18284	chr8	-	1810	8	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	465.138908372147	39	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85573498	85568719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85572463_85572695_85572878_85572981_85573336
18285	chr3	-	3312	7	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	0	511	combination_of_known_junctions	FALSE	canonical	3	5	junction_5	69.5741011839575	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGCCATGACTAAATCT	NA	False	NA	NA	False	NA	NA	NA	35986985	35947143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975261_35975337_35986933
18286	chr14	+	3019	10	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-18	-1892	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	171.624122739704	8	44	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATCTTTTAAATGTGCA	NA	False	NA	NA	False	NA	NA	NA	52517055	52531966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529244_52529384_52529676_52529976_52530141_52530657
18287	chr19	+	3446	6	NIC	ENSMUSG00000024835.16	novel	2814	8	NA	NA	2	-44	intron_retention	FALSE	canonical	3	402	junction_1	97.4117036089607	1	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCTATATTTTCATTC	3590	False	NA	NA	False	NA	NA	NA	4198632	4203988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4201499_4201578_4201725_4202520
18288	chr2	-	2668	18	FSM	ENSMUSG00000034906.16	ENSMUST00000110387.4	2695	18	5	22	5	-4	multi-exon	FALSE	canonical	3	394	junction_9	30.9044738701424	899	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTCTGAGTGCCCAGTA	NA	False	NA	NA	False	NA	NA	NA	126975869	126945750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
18289	chr2	+	2629	13	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	5.73488351136175	35	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGCGTGTCGGTGCTGT	2741	False	NA	NA	False	NA	NA	NA	30023801	30042018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711_30040833_30041747
18290	chr9	-	2489	14	NNC	ENSMUSG00000032113.17	novel	3397	13	NA	NA	-12	52	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_12	162.01497483568	1158	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAGCTGAGAACATTTAA	709	False	NA	NA	False	NA	NA	NA	36637893	36620683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36636556_36636616_36637092_36637175_36637858
18291	chr3	+	3320	12	NNC	ENSMUSG00000027671.15	novel	922	8	NA	NA	-156	-17	intron_retention	FALSE	non_canonical	0	0	junction_2	553.881733952846	1	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCACTACTGTCCTAG	NA	False	NA	NA	False	NA	NA	NA	32763156	32781100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763492_32766016_32766087_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32774112_32774334_32774665_32776768_32776865_32779395_32779483_32780670
18292	chr9	+	4325	21	NNC	ENSMUSG00000038535.18	novel	4990	23	NA	NA	-3507	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17.365123091991	5	65	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATTCAGATTCCTGT	NA	False	NA	NA	False	NA	NA	NA	72199062	72271048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72199209_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
18293	chr15	-	1723	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	44	86	-20	-86	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	3	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCTGCGTCTGCAGTTA	NA	False	NA	NA	False	NA	NA	NA	31601906	31591031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
18294	chr18	-	2486	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	9	3	9	-3	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	1204	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTGGGGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	24255001	24237816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
18295	chr17	-	3020	8	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	0	-724	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	20.506843058962	16	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGGAAAAAAAACCCTA	NA	False	NA	NA	False	NA	NA	NA	22533818	22505575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507883_22508749_22508877_22511388_22511437_22528185_22528243_22528485_22528579_22531009_22531223_22532217_22532302_22533727
18296	chr2	+	7380	27	FSM	ENSMUSG00000035168.17	ENSMUST00000112568.8	7422	27	42	0	9	0	multi-exon	TRUE	canonical	3	118	junction_5	18.3464360565297	218	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGCATTCATTGCT	NA	False	NA	NA	False	NA	NA	NA	59442427	59676061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_59442541_59477112_59477217_59529691_59529772_59555004_59555194_59588808_59588914_59601475_59601607_59602696_59602884_59615667_59615932_59621119_59621222_59621942_59622225_59623439_59623592_59626138_59626371_59627929_59628097_59629914_59630523_59636619_59636729_59637910_59638034_59645661_59645899_59647828_59648015_59650550_59650630_59663479_59663614_59664924_59665049_59665735_59665912_59667429_59667563_59669318_59669411_59671282_59671430_59672353_59672455_59673038
18297	chr16	-	2906	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	642	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	13486034	13355823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
18298	chr11	-	2662	10	NNC	ENSMUSG00000041654.16	novel	2664	10	NA	NA	-26085	-1	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_9	159.268078997815	34	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	NA	False	NA	NA	False	NA	NA	NA	113482690	113135679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113482607
18299	chr18	-	2529	13	NNC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	-5	0	intron_retention	FALSE	non_canonical	0	0	junction_5	2361.06229622741	1	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649591	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634947_64636578_64636693_64637918_64638119_64638227_64638311_64638362_64638383_64642353_64642387_64643523_64643603_64644683_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
18300	chr6	-	2953	8	NIC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	20	-6	combination_of_known_junctions	FALSE	canonical	3	14	junction_2	1434.25577657999	558	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGTCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39397376	39374743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39376369_39376731_39376871_39377395_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
18302	chr14	-	2494	11	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-20	0	intron_retention	FALSE	canonical	2	8	junction_10	279.42013170135	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741021	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735523_30735609_30735753_30736009_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30740885
18303	chr19	-	2108	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	913.708012091908	3	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3766	False	NA	NA	False	NA	NA	NA	7017332	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012010_7012157_7012863_7013074_7017247
18304	chr2	-	2429	13	NIC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	-37	3	intron_retention	FALSE	canonical	0	0	junction_12	292.674295173928	2256	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAATGACTCATTGTTTCA	8556	False	NA	NA	False	NA	NA	NA	155434524	155405105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155433936
18305	chr1	-	2702	11	NNC	ENSMUSG00000009907.18	novel	4633	11	NA	NA	-1838	-1728	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	211.778681646666	2	20	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTGGCTTTTATATGTT	4965	False	NA	NA	False	NA	NA	NA	106719517	106698887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707212_106707320_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407
18306	chr8	-	4104	15	NNC	ENSMUSG00000019470.13	novel	4409	18	NA	NA	0	-6	intron_retention	FALSE	canonical	1	1	junction_8	117.733788259612	4	97	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTACATCCCGGTCTTG	1025	False	NA	NA	False	NA	NA	NA	3671302	3660095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_3660220_3660310_3660675_3660846_3661019_3661113_3661237_3661393_3663077_3663158_3663500_3663589_3663710_3663798_3663985_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
18307	chr19	-	4334	14	Antisense	novelGene_ENSMUSG00000024900.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	51	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCACCGACGCGCGCCGCG	NA	False	NA	NA	False	NA	NA	NA	3429195	3373310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_3373374_3399187_3399341_3402482_3402623_3406314_3408277_3412083_3412223_3414477_3414554_3415672_3415781_3416327_3416415_3418849_3419049_3420704_3420894_3421569_3421676_3425090_3425210_3426410_3426574_3428365
18308	chr6	+	4494	14	NIC	ENSMUSG00000001632.17	novel	4773	14	NA	NA	9	4	combination_of_known_junctions	FALSE	canonical	3	30	junction_7	51.0992768507985	84	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTATTTAGAATTCTTTCT	270	False	NA	NA	False	NA	NA	NA	113284135	113301806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113295683_113295998_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
18310	chr19	-	3123	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	10	3	0	-3	multi-exon	FALSE	canonical	3	111	junction_11	27.8217466521579	240	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATTGTGTGTGTTCTATT	NA	False	NA	NA	False	NA	NA	NA	44058214	44023385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
18312	chr11	-	2229	5	NNC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	41	0	intron_retention	FALSE	non_canonical	0	0	junction_2	233.719249314215	83	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1672	False	NA	NA	False	NA	NA	NA	78402957	78397880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78398632_78399144_78400123_78400449_78400641_78401173_78401248_78402722
18313	chr9	+	2603	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	27	14	27	-14	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	759	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCACACTTGCAGATTGG	NA	False	NA	NA	False	NA	NA	NA	86904093	86959813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
18314	chr16	-	3062	9	ISM	ENSMUSG00000044626.14	ENSMUST00000060673.8	3923	10	11254	659	-7656	-659	3prime_fragment	FALSE	canonical	3	141	junction_8	24.9821811497715	16	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGAAGGAGAAAGGGTTTA	NA	False	NA	NA	False	NA	NA	NA	21803159	21773225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802650
18315	chr17	+	4496	18	NNC	ENSMUSG00000000708.15	novel	455	6	NA	NA	-7963	0	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_1	62.7882143526291	322	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGTGTTATGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	53865925	53979748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_53866377_53917891_53918019_53931379_53931526_53936351_53936445_53939564_53939747_53945379_53945572_53948220_53948328_53951641_53951765_53955774_53955912_53960049_53960259_53961466_53961594_53966345_53966457_53967056_53967201_53970562_53970678_53972433_53972471_53972680_53972745_53972850_53972936_53977702
18316	chr18	+	4951	10	NIC	ENSMUSG00000024442.7	novel	2394	13	NA	NA	0	-808	intron_retention	FALSE	canonical	3	315	junction_6	29.8254179443567	41	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTGAGACTGAATGCAGC	3975	False	NA	NA	False	NA	NA	NA	38383319	38394335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38391240_38391322_38391416_38392949_38393110_38394116
18319	chr7	-	3214	21	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	0	intron_retention	FALSE	canonical	3	14	junction_11	41.9228756170184	1	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGCCTCATGATGTA	NA	False	NA	NA	False	NA	NA	NA	140697703	140681137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
18320	chr6	-	5482	18	NNC	ENSMUSG00000000628.11	novel	5513	18	NA	NA	20	-5	intron_retention	FALSE	non_canonical	0	0	junction_7	205.899394252711	9	278	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATATTCAGTGTGTGAT	9418	False	NA	NA	False	NA	NA	NA	82751415	82702010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712232_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721020_82721842_82721963_82726169_82726311_82737075_82737248_82750898
18321	chrX	-	2787	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	51	10	-6	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	10	102	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921358	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
18322	chr6	-	2374	19	NNC	ENSMUSG00000025607.16	novel	3155	24	NA	NA	831	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.7604537506843	1	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	NA	False	NA	NA	NA	30872530	30748410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30748850_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840536_30862510_30862595_30867535_30867608_30871781_30871863_30872476
18324	chr19	+	2497	9	ISM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	3277	16	-1490	-16	3prime_fragment	FALSE	canonical	3	224	junction_3	17.0806908525387	3	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACCTGGGACCTTGGTGT	6007	False	NA	NA	False	NA	NA	NA	5094658	5099929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
18325	chr9	+	3961	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_2	34.0665614972351	179	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	NA	False	NA	NA	NA	19533395	19561027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
18326	chr15	-	3496	7	NIC	ENSMUSG00000022195.8	novel	3206	8	NA	NA	-8	-227	combination_of_known_splicesites	FALSE	canonical	3	13	junction_2	140.23512002665	59	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTATTTTAGTGTG	NA	False	NA	NA	False	NA	NA	NA	12824705	12808489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_12810931_12812018_12812159_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
18327	chr2	-	2253	7	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	5	1722	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	446.590198678336	14	94	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTGGAAGGTATGTTT	2342	False	NA	NA	False	NA	NA	NA	177269998	177259274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177259385_177260180_177261611_177261692_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
18328	chr9	+	3883	22	NNC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	57.3318699386092	2	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTGACCTGGTATGCTT	6620	False	NA	NA	False	NA	NA	NA	21232033	21266320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21264297_21264977
18329	chr17	+	2323	15	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	345.685690966195	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165609	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174916_21176026_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
18330	chr1	+	1998	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	37	657	37	-657	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	139	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCTAAGAAGGAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	66740026	66758307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
18331	chr19	-	2852	19	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	539.608282706476	1	109	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTGGCTAACTACTTGG	3918	False	NA	NA	False	NA	NA	NA	5345431	5323960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325120_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
18332	chr7	+	3431	15	FSM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	12	21	12	0	multi-exon	FALSE	canonical	3	28	junction_1	76.8787808096324	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTTCTTTGAGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	130294506	130366493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_130294718_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
18333	chr2	+	370	2	Genic_Genomic	ENSMUSG00000064193.9	novel	1302	1	NA	NA	489	331	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTCTAAATTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	80667973	80669117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_80668131_80668904
18334	chr11	+	1823	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	39	186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2209.63625483884	2	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940557	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947740_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951686_22952339_22952402_22952821_22952931_22953136
18335	chr11	+	2168	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4324	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	2046.53471344449	5	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGGGGGAACTGTAGA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55390637_55390798
18338	chr3	+	3316	12	FSM	ENSMUSG00000028175.16	ENSMUST00000120272.8	3323	12	0	7	0	-7	multi-exon	FALSE	canonical	3	37	junction_11	13.4778667659976	183	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAGACATTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	159201069	159235585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234635
18339	chr2	-	2623	10	FSM	ENSMUSG00000026761.13	ENSMUST00000141441.8	2133	10	0	-490	0	490	multi-exon	FALSE	canonical	3	352	junction_2	49.1515670473473	28	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGTGAACTTCAGGGAT	NA	False	NA	NA	False	NA	NA	NA	48839246	48800925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
18340	chr12	+	2767	22	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	62.5021722978499	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	17398437	17480096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115_17479584_17479858
18341	chr11	+	2725	11	NNC	ENSMUSG00000059248.14	novel	2932	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	207.63720764834	55	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117223244	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248_117252115_117252236
18342	chr18	+	3141	25	FSM	ENSMUSG00000033628.16	ENSMUST00000115812.10	3257	25	110	6	-13	0	multi-exon	FALSE	canonical	3	114	junction_11	21.8495089571063	338	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCATATGCCTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	30405909	30481173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415140_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435972_30436128_30436618_30436710_30438027_30438096_30444272_30444379_30445604_30445722_30449895_30450028_30452553_30452683_30453286_30453357_30455222_30455288_30456574_30456660_30457596_30457672_30466213_30466383_30469146_30469238_30477003_30477130_30480775
18344	chr12	-	1837	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	102	258	53	0	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	24	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	21467536	21440329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
18345	chr16	-	3452	2	FSM	ENSMUSG00000003526.13	ENSMUST00000132241.2	687	2	-136	-2629	5	2626	multi-exon	FALSE	canonical	3	130	junction_1	0	45	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCAGGTCATGCACTT	8077	False	NA	NA	False	NA	NA	NA	17907022	17899438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17902620_17906751
18346	chrX	+	3228	5	NNC	ENSMUSG00000060090.17	novel	4417	5	NA	NA	37	-686	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	176.987287679087	2	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGTACCAAAATTTGATAA	NA	False	NA	NA	False	NA	NA	NA	20230894	20266406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20230999_20243378_20243786_20247943_20248059_20263459_20263546_20263890
18347	chr19	-	3659	32	ISM	ENSMUSG00000048612.17	ENSMUST00000226068.2	6633	54	-60	38464	-12	9952	5prime_fragment	FALSE	canonical	3	104	junction_6	13.0618475968402	6	18	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCTTACAATAAAACCCT	8844	False	NA	NA	False	NA	NA	NA	38031859	37926221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
18349	chr16	-	2724	23	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	88.6328670638999	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGCCTTTAACTGTTCT	NA	False	NA	NA	False	NA	NA	NA	13486019	13355824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472366_13482532_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
18350	chr5	-	3626	17	NIC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	-4	-702	combination_of_known_splicesites	FALSE	canonical	3	29	junction_15	81.8305938738685	230	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTTTCCAGACATTGC	NA	False	NA	NA	False	NA	NA	NA	23880969	23711151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23821324_23821389_23880717_23880773_23880855
18351	chr18	-	3581	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	64	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	338.785551639972	1	97	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATATTTTGTGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	35064996	35035842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042339_35042869_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
18352	chr1	+	3314	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	88	4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	122.500499790734	286	31	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGAAGTTTAAATGCTAA	9641	False	NA	NA	False	NA	NA	NA	175708234	175736302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721606_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
18353	chr8	-	2260	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	36	41	36	-31	multi-exon	FALSE	canonical	3	3119	junction_12	186.058007680998	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAGATCTTTCCTCCAAT	NA	False	NA	NA	False	NA	NA	NA	26337686	26306944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
18354	chr7	-	4003	23	NNC	ENSMUSG00000063550.9	novel	3748	23	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	34.1091163500584	6	49	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTCAGGAAAATCCATTC	9976	False	NA	NA	False	NA	NA	NA	101859349	101783405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829658_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
18355	chr11	+	2539	23	NIC	ENSMUSG00000059439.16	novel	3810	28	NA	NA	2	-19047	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	32.5709651161129	219	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	3525	False	NA	NA	False	NA	NA	NA	85244039	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_85244060_85245419_85245506_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
18356	chr9	+	2401	6	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-28	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	239.379531288705	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGCTGTGTCTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	77824687	77891796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77890020
18357	chr9	+	1811	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	3	2	intron_retention	FALSE	canonical	1	9	junction_7	995.657298281543	8	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGACAACTGATCTTTGA	1182	False	NA	NA	False	NA	NA	NA	108437671	108442770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440797_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
18358	chr11	+	4396	19	NNC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	6281	-25705	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	28.7677481449858	36	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTCATTATATATACACA	NA	False	NA	NA	False	NA	NA	NA	87324697	87420078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87418858
18359	chr2	-	4544	24	NNC	ENSMUSG00000034032.16	novel	4744	25	NA	NA	2	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	133.374538371543	1	148	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAAATAAATTCTTTTCT	503	False	NA	NA	False	NA	NA	NA	119617979	119594470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610532_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
18360	chr6	+	2240	11	NNC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	-1	-2	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_4	267.908211893551	1413	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTATGGAAGCGTTATT	NA	False	NA	NA	False	NA	NA	NA	113023286	113045232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113023352_113024375_113024666_113026299_113026378_113027717_113027898_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
18361	chr15	+	3723	8	FSM	ENSMUSG00000036167.17	ENSMUST00000109256.11	1154	8	25	-2594	-22	392	multi-exon	FALSE	canonical	3	108	junction_5	28.6199587843226	144	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAATAAATTCGTCTCC	NA	False	NA	NA	False	NA	NA	NA	93296255	93389783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
18362	chr18	-	3403	17	NNC	ENSMUSG00000041225.17	novel	2500	17	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	50.3409857248545	3	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAGAGTTTTTTTCCATT	1	True	NA	NA	False	NA	NA	NA	6135946	6025215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6069830_6070092_6112179_6112440_6115813_6115851_6135803
18363	chr5	-	4870	8	FSM	ENSMUSG00000029575.18	ENSMUST00000123256.3	1277	8	-28	-3565	1	-29	multi-exon	FALSE	canonical	3	177	junction_4	16.4738506458581	128	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAATGCTACATAAATCAG	NA	False	NA	NA	False	NA	NA	NA	114582081	114569123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
18364	chr1	-	2530	11	NIC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	-64	-3	combination_of_known_splicesites	FALSE	canonical	1	19	junction_7	751.197151219305	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGATGGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	125363348	125320645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125339000_125339112_125343992_125344118_125345985_125346042_125363021
18365	chr17	-	4226	4	Antisense	novelGene_ENSMUSG00000006705.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCTCATAAAAACATCCCA	NA	False	NA	NA	False	NA	NA	NA	31826639	31817553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_31818617_31821758_31821834_31822158_31822332_31823724
18366	chr10	+	1677	5	Antisense	novelGene_ENSMUSG00000019773.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	264	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGCCGCAAAACTCGGGC	NA	False	NA	NA	False	NA	NA	NA	5749157	5755333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5749821_5750251_5750435_5751150_5751243_5751868_5752531_5755256
18367	chr6	-	2631	20	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	48	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	154.682088415092	24	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTAAGCATCCTGTCCT	3541	False	NA	NA	False	NA	NA	NA	125168518	125144977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150785_125162678_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
18368	chr5	+	2113	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-50	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	744.696260789144	2	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650795	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654772_45655827_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
18369	chr12	+	2474	10	NIC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-3438	-405	intron_retention	FALSE	canonical	3	2594	junction_6	188.789712525751	3	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAATGCTGATAAATGTA	NA	False	NA	NA	False	NA	NA	NA	17320404	17334366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
18370	chr2	+	3356	17	Antisense	novelGene_ENSMUSG00000101645.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	28	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGACAAACTGATCTGGCA	NA	False	NA	NA	False	NA	NA	NA	84433025	84481068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_84433250_84433993_84434097_84438672_84438758_84439300_84439421_84439874_84440066_84440850_84441003_84441106_84441234_84442366_84442444_84443269_84443438_84444260_84444349_84445430_84445619_84446826_84447287_84450261_84450797_84451173_84451331_84452353_84452427_84454613_84454903_84480749
18371	chr16	+	2358	14	NNC	ENSMUSG00000022945.13	novel	1922	14	NA	NA	-41	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	336.880380153764	2	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGAAAAAGTGTGTGTGC	4440	False	NA	NA	False	NA	NA	NA	93680862	93702993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93681254_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696780_93697074_93697812_93698245_93701893_93701986_93702792
18372	chr2	-	5996	18	FSM	ENSMUSG00000038831.17	ENSMUST00000131298.7	6035	18	34	5	34	-1	multi-exon	FALSE	canonical	3	17	junction_6	7.39259893617541	74	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATCGTTCTATTTATTA	NA	False	NA	NA	False	NA	NA	NA	33261407	33023433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
18373	chr7	+	4945	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	-11	22	-11	-22	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	697	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATAAATTCATTGGTCC	NA	False	NA	NA	False	NA	NA	NA	78545663	78560935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
18375	chr17	-	2973	5	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	-23	-429	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	22.8842194535885	1	105	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTTTTTACTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	22533841	22505280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507883_22508749_22508871_22511384_22511437_22532217_22532302_22533727
18376	chr5	+	3731	13	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	9	-5	intron_retention	FALSE	canonical	0	0	junction_8	81.7164389146326	2	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9208	False	NA	NA	False	NA	NA	NA	110987874	111022006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008795_111011123_111011224_111013387_111013475_111014128_111015960_111019892_111019974_111021345
18378	chr12	-	3378	15	Antisense	novelGene_ENSMUSG00000113223.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGCCCCGCGGCGCGCCCG	NA	False	NA	NA	False	NA	NA	NA	99921469	99850776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_99850808_99857431_99858004_99859875_99859919_99860966_99861020_99864517_99864618_99868604_99868642_99872294_99872387_99875936_99876106_99876541_99876619_99877851_99878039_99878532_99878582_99880308_99881815_99901261_99901367_99911498_99911606_99921219
18379	chr11	+	1930	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	107	447	0	182	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940625	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
18380	chr18	+	4016	7	FSM	ENSMUSG00000024277.15	ENSMUST00000025127.5	4026	7	10	0	10	0	multi-exon	FALSE	canonical	3	115	junction_6	13.0596920161065	246	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTGGACTTATTCTTA	NA	False	NA	NA	False	NA	NA	NA	23937050	24026914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_23937279_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
18381	chr10	-	2544	5	ISM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	8922	6	8312	-6	3prime_fragment	FALSE	canonical	3	315	junction_3	61.6050931336038	1	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAGAAAGTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	40169260	40163459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159
18383	chr3	+	3796	24	NNC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-60	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	110.88673353859	2	120	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAGTCCTTATTTTT	NA	False	NA	-51	True	NA	NA	NA	63148897	63289045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63148988_63150636_63150788_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
18384	chr11	-	2920	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.083078726175	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGAATTTTGTCTTTT	1327	False	NA	NA	False	NA	NA	NA	20062922	20012306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20012555_20013271_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
18385	chr5	-	3378	9	FSM	ENSMUSG00000035234.19	ENSMUST00000055245.13	2139	9	15	-1254	-3	1254	multi-exon	FALSE	canonical	3	145	junction_2	23.2725025512943	357	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAATGTTATTACTACAT	NA	False	NA	NA	False	NA	NA	NA	100968816	100951803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
18386	chr8	+	4827	6	FSM	ENSMUSG00000078908.11	ENSMUST00000179926.9	3470	6	16	-1373	16	0	multi-exon	FALSE	canonical	3	24	junction_1	7.91454357496375	67	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTCAGCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	114362234	114371811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_114362341_114362743_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
18387	chr2	-	4729	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	4	2343	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.3386961560736	12	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	156681716	156672625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156676816_156676891_156676959_156679742_156679834_156680337_156680457_156681454
18388	chr16	+	3395	19	ISM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	47	42440	47	26820	5prime_fragment	FALSE	canonical	3	387	junction_7	38.3631124266753	20	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGAATTTCTAGGTATGC	NA	False	NA	NA	False	NA	NA	NA	48251646	48408823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255
18389	chr10	+	2510	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	88	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	272.669980686079	1	66	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7078	False	NA	NA	False	NA	NA	NA	60113537	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60138059_60138109
18390	chr6	-	3921	1	NIC	ENSMUSG00000072872.4	novel	4503	5	NA	NA	646	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAGATGATTATTTTT	NA	False	NA	NA	False	NA	NA	NA	100209446	100205525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_100205500_100209400
18391	chr18	+	2812	8	NIC	ENSMUSG00000060450.15	novel	3040	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	91.929209676994	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGTAATTGAAGTAGACA	968	False	NA	NA	False	NA	NA	NA	38429729	38450889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38429852_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
18394	chr11	-	3078	1	FSM	ENSMUSG00000081076.4	ENSMUST00000121691.2	888	1	-210	-1980	-210	1980	mono-exon	FALSE	NA	NA	NA	NA	NA	4	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAACACATTTCCTGTTAG	NA	False	NA	NA	False	NA	NA	NA	32989913	32986835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_32986800_32989900
18395	chr4	-	2539	13	NIC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	2	-9	combination_of_known_junctions	FALSE	canonical	3	137	junction_12	229.274580652399	49	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAGTTATTCACCTGATG	NA	False	NA	NA	False	NA	NA	NA	122779651	122752848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779625
18396	chr13	-	4280	6	FSM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	24	62	24	-62	multi-exon	FALSE	canonical	2	8	junction_3	4.81663783151692	18	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGTAAAGATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	21637876	21626411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_21630000_21631955_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
18397	chr14	+	5267	12	FSM	ENSMUSG00000022019.17	ENSMUST00000169504.8	5280	12	3	10	3	-10	multi-exon	FALSE	canonical	3	80	junction_9	9.05812269605902	41	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACCTTGAACTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	87654077	87752192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080
18398	chr1	-	2154	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	41	-244	3	244	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	3855	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCAGTATGACCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	78465493	78401460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
18399	chr2	-	2562	11	NNC	ENSMUSG00000033808.17	novel	2160	19	NA	NA	26113	1	intron_retention	FALSE	non_canonical	0	0	junction_1	173.572348028135	1	41	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTAGTGTCTCTCTCATT	NA	False	NA	NA	False	NA	NA	NA	120208437	120185795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120185994_120186239_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204964_120205994_120208373
18400	chr1	-	2972	13	NNC	ENSMUSG00000073643.12	novel	4551	12	NA	NA	29	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.299471593825	1	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATACCCCTTGCTTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	79739409	79680001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_79680067_79681545_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
18401	chr1	-	2317	3	NIC	ENSMUSG00000043716.14	novel	784	4	NA	NA	-1	-9	intron_retention	FALSE	canonical	3	5452	junction_2	490	10	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGCTTGGCAAATTGAAA	NA	False	NA	NA	False	NA	NA	NA	16174627	16171538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16172824_16172915_16173909_16174588
18402	chr19	-	3372	8	NNC	ENSMUSG00000024764.11	novel	3231	8	NA	NA	-4	289	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	171.304240628021	1	99	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGCTGTGTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	7218425	7202743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212457_7212524_7218302
18403	chr15	+	4178	21	NIC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	201	-5392	combination_of_known_junctions	FALSE	canonical	3	400	junction_1	99.6544529863067	3	57	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCACTTGGCTCTGTGCC	26	False	NA	NA	False	NA	NA	NA	25774273	25808365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821
18404	chr15	+	870	1	Intergenic	novelGene_3269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCGAGATACTTTAATTGC	NA	False	NA	NA	False	NA	NA	NA	25808619	25809489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_25808600_25809500
18405	chr1	-	2857	26	Genic_Genomic	ENSMUSG00000103380.2	novel	942	2	NA	NA	-25387	7102	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTCGGACAAGGACTT	NA	False	NA	NA	False	NA	NA	NA	171945633	171910374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_171910515_171915116_171915232_171916662_171916736_171918503_171918587_171918730_171918805_171919808_171919922_171925239_171925345_171927232_171927334_171928944_171929081_171929775_171929858_171931673_171931825_171932750_171932820_171933683_171933758_171935874_171935962_171937352_171937492_171938054_171938140_171938214_171938379_171939427_171939599_171939694_171939836_171940590_171940782_171940899_171940997_171942311_171942401_171942589_171942713_171944491_171944581_171944751_171944861_171945577
18406	chr14	-	3400	10	FSM	ENSMUSG00000022052.10	ENSMUST00000089230.7	4010	10	-10	620	-10	-2	multi-exon	FALSE	canonical	3	602	junction_4	68.1900032498157	398	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAATTTGAATTTGTATT	NA	False	NA	NA	False	NA	NA	NA	67309903	67252124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
18408	chr11	-	2523	15	NNC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	64	1641	intron_retention	FALSE	canonical	0	0	junction_6	307.514136061338	19	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGACGAGAGGTTAAAGCC	NA	False	NA	NA	False	NA	NA	NA	120687139	120678385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120679432_120680302_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
18409	chr6	-	1535	1	FSM	ENSMUSG00000096403.3	ENSMUST00000178598.3	843	1	24	-716	24	716	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAATA	75	False	NA	NA	False	NA	NA	NA	7983359	7981824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7981800_7983400
18410	chr13	+	3301	6	NNC	ENSMUSG00000042348.11	novel	1966	6	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	152.769892321753	319	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGGCGTTTCCTGACTG	NA	False	NA	NA	False	NA	NA	NA	113931032	114293990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239_114291977_114292040
18411	chrX	+	1813	11	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-37	36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	918.535486521887	4	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTGTTTTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	161543360	161561788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161552781_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
18412	chr11	-	2326	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	40	1193	2	0	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9656	False	NA	NA	False	NA	NA	NA	106679318	106672373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
18413	chrX	-	2980	15	NNC	ENSMUSG00000057421.13	novel	4126	10	NA	NA	64	15288	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	377.976945631042	2	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCGGGTGGAAAGGCATT	NA	False	NA	NA	False	NA	NA	NA	95000428	94963652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94964399_94964751_94964799_94974742_94974806_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
18414	chr7	-	1944	16	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	4	26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	506.44023887874	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTCAGTACTTTTATCT	NA	False	NA	NA	False	NA	NA	NA	33929710	33901557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907749_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
18416	chr19	+	3886	19	ISM	ENSMUSG00000024892.18	ENSMUST00000113825.4	4044	20	7325	-10	7263	10	3prime_fragment	FALSE	canonical	3	75	junction_6	11.2145188081685	5	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACAGTGTGGGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	4651698	4671736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_4651764_4651892_4652078_4652237_4652404_4652501_4652648_4652785_4652904_4653087_4653240_4654492_4654612_4657559_4657723_4659891_4660075_4667607_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670644_4670847_4670989_4671067
18417	chr14	+	2673	17	FSM	ENSMUSG00000021975.10	ENSMUST00000043914.8	2674	17	0	1	0	-1	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	526	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCCAGTTCTATTGCAC	NA	False	NA	NA	False	NA	NA	NA	65187493	65277280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
18418	chr17	+	2461	7	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	87	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTACTGCGCTTGCGCAGC	NA	False	NA	NA	False	NA	NA	NA	47084836	47093572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_47086661_47088975_47089086_47089354_47089446_47090210_47090348_47091315_47091480_47092710_47092817_47093543
18419	chr19	-	3047	20	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	523.11882200802	1	135	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGAGTACTGGCTAACT	3910	False	NA	NA	False	NA	NA	NA	5345439	5323966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338008_5341319_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
18420	chr10	-	1679	10	Antisense	novelGene_ENSMUSG00002075374.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGCCGAAGCGGTCCTC	NA	False	NA	NA	False	NA	NA	NA	127926133	127919175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127919320_127919834_127919942_127920163_127920340_127920957_127921079_127921307_127921494_127921904_127922064_127922164_127922288_127924187_127924401_127924823_127925026_127925885
18421	chr18	+	2688	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237061.2	1854	14	8	-842	8	4	multi-exon	FALSE	canonical	3	171	junction_1	296.625019792437	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGTCATGTTGATTGGT	NA	False	NA	NA	False	NA	NA	NA	35695279	35724476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
18422	chr11	-	2393	12	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-29	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	563.12376984575	1	66	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATTTTACTACCCATT	3750	False	NA	NA	False	NA	NA	NA	120463696	120451142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120451693_120451758_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
18423	chr2	-	3790	8	NNC	ENSMUSG00000027650.13	novel	774	4	NA	NA	17	3129	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	65.2286402602728	4	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCCAGGTAACTGGAGT	NA	False	NA	NA	False	NA	NA	NA	157870336	157834070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157834706_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
18424	chr11	-	2460	12	ISM	ENSMUSG00000020917.18	ENSMUST00000165111.8	4162	27	29374	1	-25	-1	3prime_fragment	FALSE	canonical	3	3497	junction_4	188.959482298225	7	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGCGTGATGCTCTTTT	1724	False	NA	NA	False	NA	NA	NA	100385050	100367184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709
18425	chr4	-	2957	10	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	499.603571239299	1	100	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327199	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304366_141304408_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
18426	chr2	+	2032	9	Fusion	ENSMUSG00000059005.14_ENSMUSG00000093242.4	novel	1074	10	NA	NA	5	1166	multi-exon	FALSE	non_canonical	0	0	junction_8	3749.19021256591	48	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTCTCAAGTCCTTTTA	7486	False	NA	NA	False	NA	NA	NA	75489615	75497631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75493960_75496444
18430	chr16	-	2358	15	NIC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	-11	-2	combination_of_known_junctions	FALSE	canonical	2	8	junction_9	171.034964798644	702	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTTGATATTCTTATTG	NA	False	NA	NA	False	NA	NA	NA	30406368	30380190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30396716_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
18432	chr4	+	2206	13	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	42	-371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	451.593313539221	2	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGGAGTCTCGTG	897	False	NA	NA	False	NA	NA	NA	129083736	129113029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109171_129110576_129110613_129112223
18433	chr7	-	1898	18	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-7	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	473.295360499019	1	35	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	33929695	33901581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903511_33905013_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
18434	chr9	-	3619	14	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	-8	-166	intron_retention	FALSE	non_canonical	0	0	junction_13	79.8955679318191	110	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTATGGAGACTTTCCA	6396	False	NA	NA	False	NA	NA	NA	44272949	44259390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265589_44265705_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272740
18435	chr2	+	3331	1	NIC	ENSMUSG00000000827.19	novel	587	6	NA	NA	-4383	-1531	mono-exon	FALSE	NA	NA	NA	NA	NA	3	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTAATTCTTGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	181149987	181153318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_181150000_181153300
18436	chr12	+	7050	29	NIC	ENSMUSG00000036333.12	novel	6277	30	NA	NA	11	-221	combination_of_known_junctions	FALSE	canonical	3	25	junction_5	8.28017055922134	98	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCACGGAGTTTTATTCA	NA	False	NA	NA	False	NA	NA	NA	25024938	25109475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040674_25040774_25042208_25042308_25044810_25045009_25047230_25047330_25048704_25048804_25049259_25049359_25051571_25051750_25052987_25053153_25053942_25054123_25055051_25055218_25058057_25058210_25058401_25058692_25060070_25060212_25060893_25061138_25061498_25061588_25063295_25063441_25066888_25067052_25086452_25086632_25088322_25088550_25090454_25090569_25101093_25101226_25102795_25102895_25103796_25104034_25106580
18437	chr18	+	3546	11	NNC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	92.1892076113034	503	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGGTGTCAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	63110972	63132515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_63111096_63113536_63113605_63115689_63115796_63117110_63117195_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
18439	chr18	+	3037	13	NNC	ENSMUSG00000024404.8	novel	3790	13	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	113.526306300444	769	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCATTGTGTGGTTAAT	5525	False	NA	NA	False	NA	NA	NA	12261817	12289759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12262031_12268956_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
18440	chr4	+	2629	14	NIC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	0	-1	intron_retention	FALSE	canonical	3	755	junction_7	74.4213973175607	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACAATGGGTTTGGAAA	9113	False	NA	NA	False	NA	NA	NA	152018190	152065674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
18441	chr1	+	2320	9	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-35	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	813.392586639441	4	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATGTTTTTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	4928001	4968129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948275_4959797_4959826_4960962_4961051_4962144_4962293_4963639_4963787_4965156_4965229_4966578
18442	chr5	-	2631	13	NNC	ENSMUSG00000029427.12	novel	4350	14	NA	NA	227	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	115.592765777102	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACACATGAACCAAGACTT	6894	False	NA	NA	False	NA	NA	NA	123858610	123837836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123858428
18443	chr16	+	1966	10	NNC	ENSMUSG00000002845.15	novel	578	4	NA	NA	-2949	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	297.736274056234	300	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	4121	False	NA	NA	False	NA	NA	NA	38376110	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38376219_38377505_38377590_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
18444	chr10	-	3134	18	Antisense	novelGene_ENSMUSG00000036875.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	8	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGAAAACAAGTCACAGG	NA	False	NA	NA	False	NA	NA	NA	62809483	62789962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_62790117_62791098_62791223_62792708_62792927_62793829_62793948_62794672_62794835_62794950_62795147_62795985_62796220_62797197_62797314_62797389_62797501_62798172_62798282_62799579_62799809_62800678_62800871_62802193_62802283_62802375_62802582_62803429_62803520_62805552_62805738_62807622_62807770_62809029
18445	chr10	+	3565	24	NNC	ENSMUSG00000019823.18	novel	726	6	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	50.0581514392996	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9883	False	NA	NA	False	NA	NA	NA	41353099	41363026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41353329_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
18446	chr11	+	2541	11	NNC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	8	786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	122.766444926942	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTGAAAACTATTGATC	8597	False	NA	NA	False	NA	NA	NA	74661758	74709506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984_74708831_74708925
18447	chr4	-	2286	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	212.327482912599	26	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726968	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697628_147697963_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726761
18448	chr4	-	4885	10	FSM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	0	-1067	0	1067	multi-exon	FALSE	canonical	3	41	junction_7	11.2546286774228	144	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAATTAAAAAAATT	7832	False	NA	NA	False	NA	NA	NA	144973440	144938965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144973293
18449	chr11	+	1632	8	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCACTAAGTTTGAAAAACA	NA	False	NA	NA	False	NA	NA	NA	106672376	106676358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296_106673522_106674788_106674845_106674926_106674987_106675237_106675350_106675704_106675879_106675961_106676118_106676217
18450	chrX	+	2506	9	NNC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_6	216.579625946209	1	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGGCTTCGTGTCACT	NA	False	NA	NA	False	NA	NA	NA	73340753	73348295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344971_73345541_73345628_73345967_73346055_73346827_73346876_73346963_73347193_73347402
18451	chr4	+	1632	8	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242729	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.3426377173001	35	15	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147395004	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147534439_147534577_147578832_147578927_147639766_147639852_147665698_147665826_147667290_147667445_147668191_147668443_147669013
18452	chr9	-	2565	18	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	76.6810678014433	7	17	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854019	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832839_61839161_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
18453	chr11	-	4232	19	NNC	ENSMUSG00000005198.16	novel	5799	28	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.824770434251	41	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGTATGTGTACTGA	NA	False	NA	NA	False	NA	NA	NA	69649462	69624825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69625798_69626133_69626314_69626358_69626388_69633321_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634624_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
18454	chr11	+	3437	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	49	0	-36	0	multi-exon	FALSE	canonical	3	173	junction_11	15.0937896237857	332	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGCAGCTGAGTCACTT	NA	False	NA	NA	False	NA	NA	NA	114566305	114611803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
18455	chr10	-	1753	11	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-10	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	658.046533309005	16	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACATTTTAATGTGTATG	NA	False	NA	NA	False	NA	NA	NA	93725656	93696785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704753_93706123_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
18456	chr4	-	2714	10	NNC	ENSMUSG00000028896.14	novel	2285	10	NA	NA	1	-13	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	136.738192665156	11	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTTTGTAAATGGGCTT	5482	False	NA	NA	False	NA	NA	NA	132073015	132059246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132060314_132060928_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
18459	chr3	-	3906	15	Fusion	ENSMUSG00000106365.2_ENSMUSG00000039735.17	novel	5357	15	NA	NA	-52	-2	multi-exon	FALSE	canonical	2	3	junction_14	23.8027609442986	25	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGTACTTATCTTTT	NA	False	NA	NA	False	NA	NA	NA	122423364	122332369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_122334574_122335773_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122423274
18460	chr19	-	2649	22	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-24266	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	427.813186389783	4	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5178	False	NA	NA	False	NA	NA	NA	53052911	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53050500_53050648_53052786
18461	chr13	+	1274	1	NIC	ENSMUSG00000071180.6	novel	1918	3	NA	NA	-16	-2252	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGCCTAGTCCCGGAAGC	NA	False	NA	NA	False	NA	NA	NA	108181003	108182277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_108181000_108182300
18462	chr11	-	2750	14	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	33	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1150.57441275649	5	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGCCCGTGTTAAATAT	8169	False	NA	NA	False	NA	NA	NA	50216467	50184814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50185759_50188091_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
18463	chr7	-	3073	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	-72	-41	-6	0	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	534	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGGCTCAATGATTTC	NA	False	NA	NA	False	NA	NA	NA	139616251	139575867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
18464	chr11	+	2303	18	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	16	-19	intron_retention	FALSE	canonical	0	0	junction_13	252.188510806299	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGTTTTGCAAATATAAG	NA	False	NA	NA	False	NA	NA	NA	115455275	115474713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471859_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
18465	chr18	+	2955	12	NIC	ENSMUSG00000024404.8	novel	3790	13	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	114.557142260861	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTGGTTCATTGTGTGGT	5523	False	NA	NA	False	NA	NA	NA	12261815	12289755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
18466	chr16	+	2089	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	45	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATTTGTTTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	45973349	45975438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45973300_45975400
18467	chr10	-	3780	10	NIC	ENSMUSG00000055531.13	novel	3819	9	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	184.803465843188	28	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTAAGTGTCAGTCTC	4474	False	NA	NA	False	NA	NA	NA	117212875	117189708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_117191758_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
18468	chr12	-	3909	7	FSM	ENSMUSG00000079036.11	ENSMUST00000160113.8	2019	7	0	-1890	0	-18	multi-exon	FALSE	canonical	3	24	junction_5	112.096312755297	49	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTTTCTTTCATGTGTG	NA	False	NA	NA	False	NA	NA	NA	87490596	87472956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
18469	chr11	-	1774	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	-3	3	-3	-2	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	6	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTGGGCTTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	69563146	69557764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
18470	chr14	+	1626	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	18	1291	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	42	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTGCAGTTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	63359928	63380603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63379891_63380220
18471	chr7	-	3885	6	NIC	ENSMUSG00000053801.19	novel	1898	7	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	447	junction_1	34.8390585406667	7	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCTACAAGTCCTCTGA	8628	False	NA	NA	False	NA	NA	NA	45480219	45474657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45479569_45479715_45479834_45480018
18473	chr15	-	3821	22	NNC	ENSMUSG00000047921.18	novel	4048	22	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	45.8429736305632	8	42	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCCTTGCTTACCTCAC	NA	False	NA	NA	False	NA	NA	NA	72932894	72461487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_72462012_72462464_72462689_72557131_72557222_72565351_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797491_72808842_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72922443_72922573_72924010_72924157_72929770_72930364_72932809
18474	chr3	-	3112	8	NIC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	3	0	intron_retention	FALSE	canonical	2	9	junction_7	114.072300739129	359	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAATGAGGGCATGTGTG	3747	False	NA	NA	False	NA	NA	NA	89319167	89309275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89318867
18475	chr2	-	2569	18	NNC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	-21	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_17	111.987950414597	3	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGTGCCCAGTAAACAG	NA	False	NA	NA	False	NA	NA	NA	126975843	126945745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969565_126975768
18476	chr6	-	2375	10	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	111	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1263.6237133296	1	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8596	False	NA	NA	False	NA	NA	NA	145021799	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
18478	chr2	+	2622	7	NNC	ENSMUSG00000027287.15	novel	2723	8	NA	NA	-11	1032	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	180.931540153236	2	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCCGGCCTTTTATTATT	NA	False	NA	NA	False	NA	NA	NA	120398190	120432768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120398288_120414749_120414847_120416639_120416758_120425281_120425438_120427123_120427269_120429756_120431317_120432319
18479	chr2	-	3648	2	NNC	ENSMUSG00000089824.11	novel	6667	3	NA	NA	-19	2603	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTATGTACCTTTAT	NA	False	NA	NA	False	NA	NA	NA	155953855	155936801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155940300_155953705
18480	chr16	+	1843	15	Antisense	novelGene_ENSMUSG00000025613.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	66	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTCGGCGCCGCCTCGC	NA	False	NA	NA	False	NA	NA	NA	87280763	87292758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_87280954_87281691_87281814_87282469_87282633_87282720_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288337_87290591_87290663_87291214_87291314_87292613
18481	chr5	-	2013	15	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTCCGCTACGCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	33829542	33815928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816072_33818684_33818728_33818861_33818989_33821162_33821245_33821608_33822198_33824034_33824086_33824401_33824510_33825304_33825396_33825475_33825579_33826004_33826082_33826160_33826205_33826820_33826990_33828745_33828855_33829069_33829128_33829323
18482	chr16	-	1965	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	8	-8	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAATAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975432	45973355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45975111_45975222
18483	chr8	+	4315	33	FSM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	-22	5	-22	-5	multi-exon	FALSE	canonical	3	77	junction_7	32.3080872228611	320	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGCGTTCTGTACCTGA	NA	False	NA	NA	False	NA	NA	NA	118225007	118361876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_118225169_118230873_118231113_118282713_118282858_118284041_118284136_118284807_118284856_118293540_118293626_118294902_118294987_118300079_118300124_118300655_118300729_118304561_118304664_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
18484	chr7	-	4151	24	FSM	ENSMUSG00000000131.16	ENSMUST00000168189.8	4552	24	394	7	-179	-1	multi-exon	TRUE	canonical	3	436	junction_21	38.8223134638356	213	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACACTAGTGATGGGGCA	NA	False	NA	NA	False	NA	NA	NA	125799279	125700893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719_125728813_125730197_125730307_125739736_125739847_125748405_125748533_125751997_125752452_125755895_125755974_125760032_125760193_125768300_125768499_125770201_125770315_125773329_125773421_125799070
18485	chr5	-	2629	10	NIC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-29	81	intron_retention	FALSE	canonical	3	561	junction_4	32.3434501164007	1145	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAAGTTTTTAAGCCTTC	NA	False	NA	NA	False	NA	NA	NA	34093623	34055178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
18486	chr8	-	3466	6	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	5	-4	intron_retention	FALSE	canonical	2	4	junction_1	1060.52866062167	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTCTGTGTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	108315085	108307016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108309944_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
18487	chr15	-	4436	14	NNC	ENSMUSG00000055065.8	novel	4726	13	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.8964739798524	475	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTGTGAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	79430760	79411940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79413061_79413164_79414719_79415878_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
18488	chr4	+	2724	21	NIC	ENSMUSG00000029062.15	novel	2595	20	NA	NA	9	-3	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	136.859882726824	42	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTCTAACTTGCCTCG	3985	False	NA	NA	False	NA	NA	NA	155709348	155734392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155709399_155709641_155709797_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
18489	chr17	+	2251	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	148	11	-28	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	3	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165720	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
18490	chr15	-	3086	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_16	39.5790348543266	40	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	79212507	79170427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
18491	chr1	+	3935	1	NIC	ENSMUSG00000046062.6	novel	5594	2	NA	NA	4497	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTAAATGCTATGTGACT	NA	False	NA	NA	False	NA	NA	NA	133063578	133067513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_133063600_133067500
18492	chr7	-	813	7	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	109195	-2181	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	21.3496031709153	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCTTTTTAATAAACTGAT	1346	False	NA	NA	False	NA	NA	NA	108928829	108880982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_108881193_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739
18493	chr11	-	2433	9	NNC	ENSMUSG00000020457.14	novel	1546	9	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	644.200073249763	68	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCATGTGTCGTTATTCAT	NA	False	NA	NA	False	NA	NA	NA	3216393	3199921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3200366_3202159_3202283_3202643_3203570_3204367_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
18494	chr19	+	3307	4	FSM	ENSMUSG00000024691.14	ENSMUST00000025595.5	3267	4	-39	-1	-39	1	multi-exon	FALSE	canonical	3	71	junction_1	5.90668171555645	302	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTTCTTTAGTTATTT	NA	False	NA	NA	False	NA	NA	NA	12550847	12567127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_12550945_12554453_12554535_12561286_12561487_12564198
18495	chr15	+	1796	12	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	100	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	374.984473507772	62	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	NA	False	NA	NA	NA	85220545	85347413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346521_85346669_85347121
18498	chr10	-	2003	10	NNC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-1424	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	140.73221221723	1	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCTCCAGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	81329313	81322292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81327830_81327892_81328661_81328757_81328896_81329042_81329182
18500	chr16	-	3276	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	101	212	101	1	multi-exon	FALSE	canonical	3	1276	junction_6	130.715909088714	1	153	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAATACTTGGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	15455163	15441972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
18501	chr8	+	2270	10	Genic_Genomic	ENSMUSG00000110711.2	novel	1782	1	NA	NA	-6679	15693	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCAGGAGGGCCATGGT	NA	False	NA	NA	False	NA	NA	NA	96590762	96614916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_96591877_96593445_96593602_96596100_96596264_96597400_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602504_96604342_96604498_96614844
18502	chr6	-	2595	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	322.983270180725	2	54	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3047	False	NA	NA	False	NA	NA	NA	71885735	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870503_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878300_71879843_71879945_71880409_71880479_71882081_71882128_71884609_71884674_71884777_71884831_71885617
18504	chr11	+	4454	32	FSM	ENSMUSG00000017774.20	ENSMUST00000108431.3	4718	32	266	-2	-10	0	multi-exon	FALSE	canonical	3	104	junction_1	44.4739631998939	192	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCTTCCTGTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	75546964	75564736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75547028_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
18505	chr3	-	2858	7	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	3	-3	intron_retention	FALSE	canonical	3	357	junction_6	275.798033995088	225	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGGCTGTTGTGTATA	6157	False	NA	NA	False	NA	NA	NA	153618589	153612932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153617670_153618570
18506	chr1	+	1947	13	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	1	-804	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	497.089605995628	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGGTTTTATAGATCAGT	892	False	NA	NA	False	NA	NA	NA	58432291	58445708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193_58444327_58445216
18507	chr15	-	2514	9	NIC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	804.566643836917	17	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAAGGCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	10485995	10474864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10485820
18508	chr7	+	3961	20	Antisense	novelGene_ENSMUSG00000035401.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGACAGATACCAGAGCGC	NA	False	NA	NA	False	NA	NA	NA	98242650	98305778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98243191_98243956_98244524_98246242_98246392_98249878_98250035_98251789_98251957_98259875_98260071_98262185_98262364_98264681_98264825_98268508_98268673_98270590_98270746_98275670_98275925_98279334_98279613_98286465_98286727_98288936_98289091_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304059_98305679
18510	chr2	+	3899	12	NNC	ENSMUSG00000027282.18	novel	2377	13	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_3	762.571281047015	2	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	172	False	NA	NA	False	NA	NA	NA	90677574	90695736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90677730_90679714_90679800_90679941_90680882_90681403_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
18511	chr3	+	2768	13	ISM	ENSMUSG00000027774.17	ENSMUST00000161009.7	1971	14	20	-229	20	229	intron_retention	FALSE	canonical	0	0	junction_6	167.080049843048	49	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGCTATCTGATTTTACA	NA	False	NA	NA	False	NA	NA	NA	67337468	67366367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220
18512	chr12	+	3075	3	NNC	ENSMUSG00000113209.2	novel	569	2	NA	NA	-3838	-772	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1324	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGCCGCAGGGCGGGCG	NA	False	NA	NA	False	NA	NA	NA	54905593	54909677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_54908020_54908118_54908618_54909527
18513	chr10	+	2399	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	275.861235927782	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAATTGTGTCATGTGT	NA	False	NA	NA	False	NA	NA	NA	21870584	21875795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873270_21873337_21873796_21873953_21874058_21874149_21874558
18514	chr14	+	1924	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	54	2765	2	1295	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	2	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCAGTTTCAAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	63359964	63380607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
18516	chr3	-	4125	30	NNC	ENSMUSG00000027933.12	novel	4038	31	NA	NA	36	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	54.5894198196186	6	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAACATCTTTTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	90340800	90298712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90299219_90299299_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90309179_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
18517	chr19	+	1176	2	Intergenic	novelGene_1272	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGTCTACATACAGAT	NA	False	NA	NA	False	NA	NA	NA	41513916	41515408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41514462_41514777
18518	chr2	+	2603	5	NNC	ENSMUSG00000026960.7	novel	2548	4	NA	NA	29	1	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	247.51717112152	560	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTGTAATGGCAAGGT	NA	False	NA	NA	False	NA	NA	NA	53082128	53109233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_53082535_53084295_53084350_53092930_53093064_53104463_53104547_53107306
18519	chr2	-	3475	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	12	322	-5	-72	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	1236	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGATGTCAAGTCATA	NA	False	NA	NA	False	NA	NA	NA	151583218	151558053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
18520	chr2	+	2231	18	ISM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	4717	12	4600	-12	3prime_fragment	FALSE	canonical	3	666	junction_9	77.2107617505734	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTCTTGAACAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	166861829	166876855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
18521	chr9	+	4686	16	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	30	-170	intron_retention	FALSE	canonical	3	24	junction_15	102.536497567126	1	197	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCGGGAGAGGTGGAGCCA	NA	False	NA	NA	False	NA	NA	NA	109760897	109912068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070_109907153_109908848_109908965_109910488
18522	chr9	-	3263	8	NIC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	25	507	intron_retention	FALSE	canonical	3	1324	junction_1	67.3677086092833	51	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTCTCTACTCTCATTC	NA	False	NA	NA	False	NA	NA	NA	70328804	70314466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
18523	chr9	-	3390	11	FSM	ENSMUSG00000032468.12	ENSMUST00000186049.2	2761	11	-201	-428	31	428	multi-exon	FALSE	canonical	3	18	junction_10	66.7805360864975	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGAGTTTCAGTGTACTG	NA	False	NA	NA	False	NA	NA	NA	99450921	99400428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99450654
18524	chr7	-	5062	5	FSM	ENSMUSG00000030956.16	ENSMUST00000097999.9	5465	5	401	2	-32	0	multi-exon	FALSE	canonical	3	27	junction_4	41.3430768085782	116	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCCTGCGCATGGC	NA	False	NA	NA	False	NA	NA	NA	132414856	132313812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_132317732_132361117_132361897_132373306_132373359_132380864_132381115_132414794
18526	chr2	+	2520	11	ISM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	714	278	590	-2	3prime_fragment	FALSE	canonical	3	1543	junction_6	112.445586840925	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCAATAGTTCTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	69692619	69701852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
18528	chr3	+	4904	8	FSM	ENSMUSG00000038205.13	ENSMUST00000045743.13	5006	8	102	0	100	0	multi-exon	FALSE	canonical	3	53	junction_1	11.768168758068	90	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGAGTTACTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	97565629	97581128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_97565686_97565904_97566083_97569588_97569756_97570897_97570992_97571183_97571305_97573897_97574032_97574674_97574744_97577043
18530	chr19	-	2769	18	NIC	ENSMUSG00000063904.5	novel	2683	18	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_17	195.291353630334	729	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTGCAGTGTATGTTTC	NA	False	NA	NA	False	NA	NA	NA	4978247	4957259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978090
18532	chr2	-	2118	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	45	380	-5	-380	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	2	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCATGTATGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	154916372	154901609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
18533	chr1	-	3295	12	Antisense	novelGene_ENSMUSG00000026554.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTGAAGAACTGAGAAAAGT	5949	False	NA	NA	False	NA	NA	NA	172023020	171976824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171976887_171993412_171993485_171999894_172000542_172001502_172001649_172003047_172003145_172007472_172007583_172013860_172013935_172014420_172014477_172014916_172015025_172016502_172016636_172020083_172020205_172021351
18534	chr3	-	2163	3	Antisense	novelGene_ENSMUSG00000095661.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	29.5	1	71	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTTTCTTTTATATAG	NA	False	NA	NA	False	NA	NA	NA	12923307	12920849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_12921085_12921211_12921889_12922056
18535	chr3	+	1437	2	Intergenic	novelGene_3172	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATGTAATGGTAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	104532248	104534134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_104533127_104533575
18537	chr4	+	2251	15	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	0	118	intron_retention	FALSE	canonical	3	774	junction_2	76.4371156772757	2	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTTTTTGTTCTCTATG	9981	False	NA	NA	False	NA	NA	NA	155954023	155973308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972420_155972504_155972567_155972640_155972983_155973076
18538	chr9	+	1956	6	FSM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	55	-2	55	0	multi-exon	FALSE	canonical	0	0	junction_1	392.751626349274	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	NA	False	NA	NA	NA	55116528	55131717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
18539	chr11	+	2470	27	NIC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-2	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	165.773482901024	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAGCTATTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	29080745	29111673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
18540	chr10	-	3166	9	Antisense	novelGene_ENSMUSG00000034560.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	60	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGCTCTATCAAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	83432312	83419139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_83419227_83421285_83421382_83421672_83421745_83422493_83422583_83424018_83424169_83426154_83426251_83426849_83427046_83427550_83427651_83430032
18541	chr18	+	2291	6	NIC	ENSMUSG00000073639.7	novel	6515	7	NA	NA	-10	1075	combination_of_known_splicesites	FALSE	canonical	2	125	junction_2	359.805169501496	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGATTGTTGTGTCTA	-3	True	NA	NA	False	NA	NA	NA	6765192	6790315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_6765333_6770053_6770110_6783119_6783193_6784569_6784689_6784938_6785006_6788479
18542	chr7	+	2764	14	NNC	ENSMUSG00000030523.19	novel	2765	14	NA	NA	18	0	intron_retention	FALSE	canonical	2	7	junction_6	370.86921728739	4	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAATCTTAGATGAATTG	NA	False	NA	NA	False	NA	NA	NA	63835224	63874512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858097_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
18543	chr12	+	2136	6	NIC	ENSMUSG00000020570.16	novel	2019	5	NA	NA	-6	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	139.027191584956	315	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGAATGCCCCGTTGT	8482	False	NA	NA	False	NA	NA	NA	33004239	33026905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_33004359_33015371_33015500_33016448_33016621_33017534_33017743_33024126_33024319_33025588
18544	chr8	-	2020	12	NNC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	526.700771291764	2	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGTCAGCAGTCATGCA	7639	False	NA	NA	False	NA	NA	NA	41827672	41793702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802665_41807850_41807955_41813289_41813337_41827542
18545	chr7	+	2394	4	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	464.804857499957	1	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAACCAGACTTGCTGTG	289	False	NA	NA	False	NA	NA	NA	44465725	44480225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478627_44478668_44478866_44478926
18546	chr15	+	4031	19	NNC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	3	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	252.190067700759	9	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACACAAGGCTGTGTGAGT	2246	False	NA	NA	False	NA	NA	NA	82031454	82089577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031613_82054255_82054340_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897_82088605_82088980
18547	chr2	+	2750	9	NIC	ENSMUSG00000027132.4	novel	2886	10	NA	NA	-6	-8	combination_of_known_splicesites	FALSE	canonical	1	7	junction_4	170.123806020792	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCAAAGAATGTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	112209564	112244577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
18548	chr2	-	5899	35	ISM	ENSMUSG00000034154.16	ENSMUST00000049920.14	6354	36	19562	5	-18445	-5	3prime_fragment	TRUE	canonical	3	21	junction_28	12.5607175868888	116	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATCAAAGTGTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	119288606	119203527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_119205063_119207827_119208044_119210043_119210204_119210446_119210603_119212390_119212480_119213344_119213448_119213830_119213990_119223333_119223407_119232810_119232906_119237296_119237425_119242882_119243109_119248801_119248943_119254085_119254258_119255739_119255834_119256185_119256254_119257069_119257204_119257380_119257549_119258957_119259044_119261468_119261587_119262408_119262494_119263671_119263815_119264629_119264690_119269855_119269952_119272093_119272175_119272863_119273074_119274927_119274996_119275941_119276138_119277336_119277541_119278685_119278740_119280483_119280699_119281810_119281932_119284536_119284699_119286865_119286934_119287052_119287223_119288561
18549	SIRV7	-	2141	7	NNC	SIRV7A	novel	2247	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1327.23693773527	6	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	114916	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1549_1654_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
18550	chr7	-	2173	13	ISM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	4138	-9	-1	4	3prime_fragment	FALSE	canonical	3	183	junction_2	19.8494332412792	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCAGTTTTATCAACTTT	2832	False	NA	NA	False	NA	NA	NA	30360281	30353131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683
18551	chr7	+	3133	7	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	41	0	intron_retention	FALSE	non_canonical	0	0	junction_1	363.945050797507	1	99	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896282	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43897484_43897675_43897720_43898658_43898722_43898965_43899024_43899444_43899477_43899732_43899765_43900036
18552	chr16	+	3007	18	NNC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	19	86	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	46.8992884017994	6	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAAACGTGATACTTTT	6420	False	NA	NA	False	NA	NA	NA	44167795	44207592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190702_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
18553	chr3	-	2535	12	NNC	ENSMUSG00000005968.15	novel	2555	12	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	28.2728734284442	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	6464	False	NA	NA	False	NA	NA	NA	94566155	94520065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94521499_94522030_94522132_94523072_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
18554	chr3	+	4377	5	NNC	ENSMUSG00000033883.12	novel	6689	4	NA	NA	-69	-2035	at_least_one_novel_splicesite	FALSE	non_canonical	3	20	junction_4	13.0479883506999	83	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATAACTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	36205241	36222449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204_36220607_36220800
18555	chr8	+	2299	18	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	382.030678671709	1	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACATTCTTTTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	94941209	95041484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94954290_94954423_95013101_95013246_95023071_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
18556	chr6	+	2486	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	-6	6	-6	-6	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	874	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTTTGCAACAATGCCTT	NA	False	NA	NA	False	NA	NA	NA	85408964	85423411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
18557	chr9	+	2593	20	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	68	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	178.190100486411	1	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGACTCTTGAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	98445851	98470430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455518_98459404_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
18559	chr18	-	2024	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_10	1335.25854906724	3	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	NA	False	NA	NA	NA	64649570	64633283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644683_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
18560	chr7	-	1795	19	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	110	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.759435980953	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33929557	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901660_33901715_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
18561	chr12	+	2578	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	22	4	at_least_one_novel_splicesite	FALSE	non_canonical	3	81	junction_5	38.6812616133445	378	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	30634446	30641218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640423_30640797
18562	chr5	+	1762	10	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	35	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1111.56117551558	52	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650750	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652619_45654261_45654306_45660727_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
18563	chr18	+	3013	5	NIC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	26	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	99.8132631467382	12	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	NA	False	NA	NA	NA	63111005	63132521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_63111096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
18564	chr11	-	1500	8	ISM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	-9	2071	-9	1062	5prime_fragment	FALSE	canonical	3	438	junction_4	47.7715652766328	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCCATCCTGGACTCCA	NA	False	NA	NA	False	NA	NA	NA	6576052	6568493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
18565	chr1	-	1908	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	6	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	2936.80190931317	1	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCAGACTTAATACTTC	NA	False	NA	NA	False	NA	NA	NA	86287116	86278218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278415_86278533_86278646_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86287072
18566	chr15	+	2433	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	326	-1	300	1	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTTTTGGTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	59187255	59203042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
18567	chr7	+	2981	9	NIC	ENSMUSG00000030867.8	novel	2199	10	NA	NA	-33	4	intron_retention	FALSE	canonical	3	1108	junction_2	97.9756825697071	42	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTCTCTTTTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	121758696	121769100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121767867_121768051_121768207_121768303_121768487_121768609
18568	chr19	-	3382	18	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	2173	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	292.630818349248	1	102	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40574640	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543029_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570
18569	chr5	+	2866	9	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-19	19	intron_retention	FALSE	canonical	0	0	junction_7	615.069457459887	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAAGAAACAAAAACCCAA	8099	False	NA	NA	False	NA	NA	NA	145051091	145064917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145061505_145062387_145062595_145062700_145062777_145063536_145063984_145064061_145064537_145064630
18571	chr2	-	3621	18	NIC	ENSMUSG00000098950.8	novel	5505	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_15	88.6801725888071	5	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	155953847	155913764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155940149_155940293_155945268_155945318_155953705
18572	chr12	+	3052	10	FSM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	112	4	-21	-4	multi-exon	FALSE	canonical	3	204	junction_5	23.1948270094864	523	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTATGACCACTTTTT	NA	False	NA	NA	False	NA	NA	NA	84332117	84362602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
18574	chr18	+	3017	13	NNC	ENSMUSG00000024404.8	novel	3790	13	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	114.556633252825	3	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTGGTTCATTGTGTGGT	5532	False	NA	NA	False	NA	NA	NA	12261824	12289755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270362_12272385_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
18575	chr4	+	2157	4	NIC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-3430	-1313	intron_retention	FALSE	canonical	3	650	junction_1	23.2713462342761	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTAAACATGCTTTTAAGC	NA	False	NA	NA	False	NA	NA	NA	124931320	124938744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124931455_124934729_124934915_124936406_124937517_124938016
18576	chr9	+	4100	12	Antisense	novelGene_ENSMUSG00000032407.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCAGCAGCGCGGGTGA	NA	False	NA	NA	False	NA	NA	NA	95368904	95393938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_95371964_95372141_95372309_95373143_95373231_95373323_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375870_95377886_95377987_95382740_95382873_95384592_95384638_95393869
18577	chr17	-	3073	24	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	27	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	315.266982605792	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCATGTGCCTGTGGGGTG	NA	False	NA	NA	False	NA	NA	NA	36280626	36267712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271613_36271687_36271847_36271934_36271982_36272052_36272122_36272592_36272716_36272877_36272979_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
18578	chr13	+	2975	26	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	9	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	152.467722485777	1	54	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATATTTGTTGAATGAAT	NA	False	NA	NA	False	NA	NA	NA	18901468	19050937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929507_18994562_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030105_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
18579	chr16	+	3936	16	NNC	ENSMUSG00000039456.11	novel	4179	17	NA	NA	-413	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	278.558479796733	1	154	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTGAAAGTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	93641098	93672965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93641215_93641840_93641937_93642039_93642249_93644175_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652313_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663423_93667251_93668141_93670124_93670283_93671646
18580	chr1	-	1086	1	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	-7704	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTATGGCAAGAAGGTCGT	NA	False	NA	NA	False	NA	NA	NA	133574612	133573526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133573500_133574600
18581	chr7	-	2619	24	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	7	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	457.505903977111	1	57	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAACGGTGAGGTCTGGTC	NA	False	NA	NA	False	NA	NA	NA	143153786	143111452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122713_143122782_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142315_143146148_143146398_143153718
18583	chr7	+	2331	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	154	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACTTGCTGTGAGTAT	370	False	NA	NA	False	NA	NA	NA	44465806	44480230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478418_44478507
18584	chr4	-	2405	12	NIC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	9	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	321.086868089469	1	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATTCACCTGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	122779695	122752844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
18585	chr7	+	3607	16	NNC	ENSMUSG00000003865.17	novel	3678	16	NA	NA	8	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	66.1723675125971	1	95	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATACACCTGTA	1068	False	NA	NA	False	NA	NA	NA	45084308	45106009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104331_45104464
18586	chr17	+	3194	9	NNC	ENSMUSG00000024457.17	novel	3187	10	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_5	88.8776370916779	7	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	37148026	37170290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37167076_37167117_37167547_37167664_37167880_37167914_37168291
18587	chr2	+	2573	5	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	2580	junction_4	1654.68310787897	189	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	5796	False	NA	NA	False	NA	NA	NA	32851725	32855355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
18588	chr17	+	3324	10	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-1	2178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	54.1274216804918	1	81	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAACTTACGTCCCAGG	9389	False	NA	NA	False	NA	NA	NA	36152566	36163689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152658_36155323_36155460_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306
18589	chr7	+	1056	5	ISM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	3781	2395	-78	323	3prime_fragment	FALSE	canonical	3	418	junction_1	45.4388325114103	562	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	NA	False	NA	NA	NA	100146324	100148832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
18590	chr3	-	3721	9	NNC	ENSMUSG00000042642.14	novel	3007	9	NA	NA	0	189	intron_retention	FALSE	non_canonical	0	0	junction_1	111.881633881527	373	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTTTGAAACTGGGCC	3737	False	NA	NA	False	NA	NA	NA	89319177	89308121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89308175_89308506_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319090
18591	chr10	-	2388	15	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1257.39549409541	1	81	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCATGTGTATAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	86541326	86526739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529392_86530203_86530484_86531677_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
18592	chr1	+	2796	24	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	263.8040674655	1	54	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTCCTGCTTGCCGTT	3050	False	NA	NA	False	NA	NA	NA	171910381	171949889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931826_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942662_171949611
18593	chr10	+	2207	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	28	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	272.669980686079	44	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACCAACAGATCTGGCCT	7018	False	NA	NA	False	NA	NA	NA	60113477	60138367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60137898_60138301
18596	chr5	-	3729	18	NNC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	13	-701	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	105.366061520848	1	97	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTTCCAGACATTGCC	NA	False	NA	NA	False	NA	NA	NA	23880952	23711150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23821324_23821389_23834329_23834476_23880717_23880773_23880855
18597	chr5	+	2918	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1029.90511968606	1	104	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493757	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504122_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508574
18598	chr2	-	3536	7	ISM	ENSMUSG00000052406.15	ENSMUST00000114020.10	2278	8	70	0	8	0	intron_retention	FALSE	canonical	3	152	junction_5	25.8182751812226	18	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGAGTGTGTGGAAGTT	NA	False	NA	NA	False	NA	NA	NA	26854328	26843577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394
18599	chr10	-	1855	14	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	18	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	833.083933488509	5	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899262	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116898721_116898788_116898880_116898956_116899064
18600	chr8	-	5062	26	FSM	ENSMUSG00000031959.16	ENSMUST00000038193.15	5083	26	20	1	-2	-1	multi-exon	FALSE	canonical	3	54	junction_4	5.67718239974725	78	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAATCGTGTACTAACAC	NA	False	NA	NA	False	NA	NA	NA	112248704	112175429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
18602	chr4	+	2321	14	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	42	-371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	437.599462911951	7	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGGAGTCTCGTG	755	False	NA	NA	False	NA	NA	NA	129083594	129113029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223_129112259_129112433
18603	chr14	+	4294	23	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-9	-115	intron_retention	FALSE	non_canonical	0	0	junction_12	118.276055085599	1	189	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTAGCGCTGCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	32043966	32069662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061355_32061874_32062013_32062601_32062705_32063158_32063288_32063996_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
18605	chr11	-	1661	6	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	986	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1358.8846897364	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGATTGTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	120471220	120468937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469681_120469776_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007
18606	chr16	-	980	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	50	5	13	0	multi-exon	FALSE	canonical	3	566	junction_1	21	3346	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	15681161	15666309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15666594_15680261_15680408_15680611
18607	chr5	-	4056	33	NNC	ENSMUSG00000060261.17	novel	4302	33	NA	NA	-113	0	at_least_one_novel_splicesite	TRUE	canonical	1	8	junction_7	104.401676044676	2	85	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCAAACTCATTCTTTT	890	False	NA	NA	False	NA	NA	NA	134343345	134266696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272373_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
18608	chr10	-	1988	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-10	-182	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	577.640332877359	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCAGGGTTCCTATTAC	NA	False	NA	NA	False	NA	NA	NA	127358281	127353189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354712_127354798_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
18609	chr10	+	1957	16	Antisense	novelGene_ENSMUSG00000034024.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAGAGAAAGGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	116886901	116899678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_116887184_116888922_116889071_116889948_116890045_116890781_116890888_116891014_116891136_116891936_116892063_116893076_116893183_116893695_116893824_116894002_116894102_116896550_116896756_116897203_116897323_116897418_116897497_116897936_116898045_116898695_116898788_116898880_116898955_116899609
18612	chr6	-	1634	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	666.8362191797	3	12	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	8956	False	NA	NA	False	NA	NA	NA	47790298	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773214_47773740_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47790150
18614	chr7	+	3945	6	NNC	ENSMUSG00000037640.16	novel	2727	5	NA	NA	4	1225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	74.084816258124	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTGTCTGGCTCCATT	NA	False	NA	NA	False	NA	NA	NA	27430860	27451111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27431090_27436360_27436414_27437727_27437855_27440381_27440481_27447592_27449596_27449677
18615	chr1	-	2691	17	NNC	ENSMUSG00000003458.13	novel	2901	17	NA	NA	86	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	129.798341187397	8	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTTGTTGTTTGGTA	9082	False	NA	NA	False	NA	NA	NA	171910276	171893585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171894364_171894897_171895019_171895381_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
18616	chr10	+	1786	6	ISM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	6155	-2	-915	2	3prime_fragment	FALSE	canonical	3	1491	junction_2	103.575286627651	30	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	2060	False	NA	NA	False	NA	NA	NA	79696656	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
18617	chr15	-	1492	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	2	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4701.41214822738	11	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGTAAAAGCTTTAAGAA	160	False	NA	NA	False	NA	NA	NA	98832317	98829331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829495_98829590_98830444_98830572_98830722_98830853_98831077_98832213
18618	chr2	+	3578	17	ISM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	17631	4	-11465	-4	3prime_fragment	FALSE	canonical	3	460	junction_5	37.7110208526632	1	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATGCAAGGGTGCGGATT	6247	False	NA	NA	False	NA	NA	NA	153020853	153052382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
18619	chr13	+	3155	11	NNC	ENSMUSG00000093930.3	novel	3245	10	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	203.152775024118	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120151977	120169618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924_120168697_120168790
18620	chr11	-	3078	1	FSM	ENSMUSG00002076427.1	ENSMUST00020182605.1	173	1	-543	-2362	-543	2362	mono-exon	FALSE	NA	NA	NA	NA	NA	6	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	116731335	116728257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116728300_116731300
18621	chr15	-	1873	13	ISM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	36	6215	36	-933	5prime_fragment	FALSE	canonical	3	236	junction_12	35.1436536075703	7	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGCGTCATAAGAATTC	NA	False	NA	NA	False	NA	NA	NA	97603670	97579192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
18623	chr7	-	3511	16	NIC	ENSMUSG00000007833.16	novel	4074	17	NA	NA	0	-30	intron_retention	FALSE	canonical	3	357	junction_11	39.9080053233545	7	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTAATAAACTGAGTGAC	9322	False	NA	NA	False	NA	NA	NA	44804008	44791288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44799191_44803815
18624	chr12	+	2028	2	NNC	ENSMUSG00000079104.5	novel	1720	2	NA	NA	-3732	389	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	0	11	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTAAAGTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	57273465	57287057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_57273585_57285148
18625	chr11	+	2109	11	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	24	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	513.251945929092	5	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACGTTGTGGTGTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	4823974	4844198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4824899_4825109_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
18626	chr17	-	4519	9	NNC	ENSMUSG00000036473.17	novel	4081	9	NA	NA	-2	7	intron_retention	FALSE	canonical	0	0	junction_1	9.33742469849155	32	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATAATCAGCTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	24424501	24397521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24399096_24399220_24400370_24400729_24400959_24401423_24401520_24401759_24401824_24402667_24402827_24404177_24405262_24408917_24409028_24424447
18627	chr11	-	4530	16	NIC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	81	-19	combination_of_known_junctions	FALSE	canonical	3	63	junction_9	81.0748351147808	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTAAGCTGCTATAGTCT	8926	False	NA	NA	False	NA	NA	NA	4799455	4715863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
18628	chr15	-	1715	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	0	-98	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1832.41764071404	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTGTGTCTGTTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	31601950	31591043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592572_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
18629	chr8	-	3234	6	NIC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	15	-8	intron_retention	FALSE	canonical	3	428	junction_1	71.2673838442243	20	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGAACGTCTCAGACTT	9760	False	NA	NA	False	NA	NA	NA	123939484	123931010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123936975_123939404
18630	chr1	+	1949	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	508.873457310907	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724193_59724237_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
18631	chr2	-	4585	9	NIC	ENSMUSG00000026860.17	novel	1823	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	16	junction_4	109.984942151187	36	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATCAGGATCTCAGTCCA	NA	False	NA	NA	False	NA	NA	NA	30249257	30234824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30239617_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
18632	chr1	+	3141	7	NNC	ENSMUSG00000038806.8	novel	3213	7	NA	NA	37	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	205.119003399382	1	81	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTGTTTTGGAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	180678728	180695675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180678858_180683367_180683486_180685687_180685800_180687473_180687612_180688662_180688784_180689922_180690407_180693636
18633	chr9	-	2946	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-20	-137	intron_retention	FALSE	canonical	3	122	junction_4	100.166235285939	524	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	114469272	114415170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
18634	chr7	+	1732	3	NNC	ENSMUSG00000038503.16	novel	4492	3	NA	NA	-56	1093	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	662.5	3	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTCCAGTGATAGGTATA	NA	False	NA	NA	False	NA	NA	NA	83541481	83548381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544737_83544887_83547000
18635	chrX	-	2916	11	NIC	ENSMUSG00000031400.11	novel	2652	13	NA	NA	-73	-29	intron_retention	FALSE	canonical	3	267	junction_6	19.5284407979746	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCCATTAAATCCTCAAA	NA	False	NA	NA	False	NA	NA	NA	73472559	73453117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
18636	chr1	+	3051	9	NNC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	4	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	151.790151195656	33	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATTTATCACTGTGAT	NA	False	NA	NA	False	NA	NA	NA	191553625	191565151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248_191563866_191563960
18637	chr2	+	2211	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	237	-3	intron_retention	FALSE	canonical	3	1876	junction_6	201.098817438094	344	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATAGTATGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	130116987	130121224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
18639	chr10	+	4748	15	NIC	ENSMUSG00000019823.18	novel	3292	23	NA	NA	6	-713	intron_retention	FALSE	canonical	3	163	junction_13	20.595348196788	2	139	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGCCTTACAACCCACAG	9121	False	NA	NA	False	NA	NA	NA	41352337	41362003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761
18640	chr16	+	3831	17	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-36858	-74	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	150	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCCTCTTCTCCTCCGCC	NA	False	NA	NA	False	NA	NA	NA	16130208	16176801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16131901_16132123_16132319_16134226_16134308_16134465_16134641_16137313_16137372_16139446_16139538_16141190_16141290_16141489_16141641_16141837_16141963_16147668_16147869_16149859_16149997_16151692_16151804_16154704_16154876_16156456_16156542_16158858_16158951_16163817_16164012_16176627
18641	chr16	+	1951	17	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-32869	-116	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	37	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCCACTGCAATGAATGG	NA	False	NA	NA	False	NA	NA	NA	16134197	16176759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16134308_16134465_16134641_16136306_16136344_16137317_16137372_16139446_16139538_16141190_16141290_16141489_16141641_16141837_16141960_16147666_16147869_16149859_16149997_16151692_16151817_16154717_16154876_16156452_16156543_16158858_16158932_16159285_16159332_16163860_16164010_16176626
18642	chr3	+	2171	8	NIC	ENSMUSG00000078578.10	novel	2504	8	NA	NA	-81	-1	combination_of_known_junctions	FALSE	canonical	2	37	junction_1	932.389841389604	77	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGGATTGTTTGACAAG	NA	False	NA	NA	False	NA	NA	NA	135144159	135172433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135144324_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
18643	chr9	-	3325	22	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-64	-2	intron_retention	FALSE	canonical	3	262	junction_19	98.2873754012452	4	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTTCCTGTGTCTTTATT	7368	False	NA	NA	False	NA	NA	NA	107644860	107617696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637591_107642693_107642850_107644741
18645	chr6	+	3058	17	NNC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	217.519395686913	5	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCAGTGTAATCTAAATG	NA	False	NA	NA	False	NA	NA	NA	40302430	40373694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40342900_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
18647	chr14	-	3081	11	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	13	2	intron_retention	FALSE	non_canonical	0	0	junction_1	306.049603822648	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGTTCAGTGGCTTGTG	6443	False	NA	NA	False	NA	NA	NA	66071344	66056484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66056588_66056878_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
18648	chr4	+	3728	15	NNC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	12	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	79.9887747226613	52	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAAGTTCTGATCTCTGA	NA	False	NA	NA	False	NA	NA	NA	62327045	62345214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454_62342024_62343493
18649	chr9	+	2028	20	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	126.240503880271	7	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	108385257	108393140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388343_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
18650	chr5	-	2599	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	4	-420	-3	420	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	1306	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAGAGAATGGCCAACAA	NA	False	NA	NA	False	NA	NA	NA	32942986	32893224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
18651	chrX	+	3906	17	NNC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	0	-587	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	85.4462550378892	1	147	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATAACAAATTGAAATT	NA	False	NA	NA	False	NA	NA	NA	84091927	84248058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193881_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
18652	chrUn_JH584304v1	-	2759	6	Intergenic	novelGene_4645	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	351.61877083	1	81	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACCATAGCTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	59652	52670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55368_55702_58563_58836_59591
18653	chr11	-	2205	10	FSM	ENSMUSG00000018593.14	ENSMUST00000214685.2	1269	10	-19	-917	-19	-4	multi-exon	FALSE	canonical	3	36	junction_9	224.039568815559	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTCCTGTCCCGGGTG	554	False	NA	NA	False	NA	NA	NA	55314028	55285329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55313826
18654	chr2	-	2864	19	ISM	ENSMUSG00000034032.16	ENSMUST00000048493.12	4744	25	24	6008	1	-3109	5prime_fragment	FALSE	canonical	3	120	junction_18	73.5336699565849	1	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCACCCTTCCCGTTCCT	488	False	NA	NA	False	NA	NA	NA	119617994	119600448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
18656	chr2	-	2463	6	NNC	ENSMUSG00000027551.16	novel	2438	6	NA	NA	234	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	211.241662557366	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTTGTATTGTATAGT	NA	False	NA	NA	False	NA	NA	NA	168796952	168767282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168796771
18657	chr10	-	3015	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	63	6	13	-6	multi-exon	FALSE	canonical	3	189	junction_4	16.3291151015602	3	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTAAAGACTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	115198089	115176652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
18658	chr14	-	2135	8	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-4	intron_retention	FALSE	canonical	3	2964	junction_2	197.154347491233	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGCTTTTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	63746217	63729799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63735090_63737569_63737770_63746158
18659	chr11	+	4565	21	NNC	ENSMUSG00000020788.16	novel	4593	22	NA	NA	19	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.5224433263604	146	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGCTGGTAGTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	72852013	72883865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72852308_72861670_72861757_72862970_72863076_72863228_72863368_72863647_72863729_72863819_72863906_72866011_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72871601_72872553_72872775_72873449_72873653_72874285_72874372_72878799_72878934_72879288_72879407_72879795_72879914_72880300_72880374_72882514
18660	chr14	-	2231	10	NNC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-77	-72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	203.869663035413	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTTGTTTGGGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	40688841	40628475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40628618_40628864_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
18661	chr8	-	4675	10	FSM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	32	0	17	0	multi-exon	FALSE	canonical	3	94	junction_4	8.95392871906924	146	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCTACTGTCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	81741525	81707361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_81708610_81711066_81712430_81714115_81714223_81716635_81716730_81719824_81720019_81722310_81722470_81727681_81727784_81731960_81732091_81738795_81738932_81740383
18662	chr1	-	2231	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	20	7	20	-7	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	2088	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAATGTTTTTTATACC	NA	False	NA	NA	False	NA	NA	NA	121495698	121481570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
18663	chrX	+	2451	13	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	288	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	768.157224032511	4	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTCCTATTTTGAATT	NA	False	NA	-2	True	NA	NA	NA	74140439	74153372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74140508_74140888_74140976_74142067_74142160_74142368_74142558_74144045_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
18664	chr13	-	4868	15	NNC	ENSMUSG00000021147.18	novel	4526	14	NA	NA	-11	0	intron_retention	FALSE	canonical	0	0	junction_9	27.1680334366757	11	89	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATTATAAAGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	8921091	8853030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8902269_8902368_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920672
18665	chrX	+	4420	19	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	8	1	intron_retention	FALSE	canonical	3	191	junction_9	32.2838969147159	2	102	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTAGCTGTTTTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	20570180	20586777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
18666	chr9	-	3462	7	NIC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	2455	114	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	129.651670083943	1	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGTCACGAACAACAGGT	4769	False	NA	NA	False	NA	NA	NA	58154451	58125710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_58127853_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257
18667	chr13	+	2960	15	NNC	ENSMUSG00000114633.2	novel	523	2	NA	NA	-5574	-89	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10	37	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATCTGAGCTCCAATCAG	NA	False	NA	NA	False	NA	NA	NA	55678233	55684348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55678547_55678995_55679105_55679190_55679263_55679347_55679503_55679650_55679739_55679847_55679922_55680160_55680292_55680810_55680975_55681764_55681902_55681975_55682130_55682228_55683245_55683375_55683439_55683542_55683864_55684111_55684220_55684293
18669	chr14	-	3935	8	NNC	ENSMUSG00000062014.14	novel	4171	7	NA	NA	6	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	250.94897440536	72	108	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGTTTAAATAAAATGCT	NA	False	NA	NA	False	NA	NA	NA	47059607	47045637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47047630_47047741_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
18671	chr7	-	3050	21	NNC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	-26	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	272.659178279404	28	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	6998	False	NA	NA	False	NA	NA	NA	126101516	126090884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126091500_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
18672	chr5	+	2261	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-1	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	256.734636286941	7	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCATTTCTAAATTACTTT	NA	False	NA	NA	False	NA	NA	NA	33815928	33829486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
18673	chr5	+	4852	10	NNC	ENSMUSG00000029636.12	novel	5196	10	NA	NA	290	-13	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	43.6444670739928	3	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGTAACCCTACATGGTT	NA	False	NA	NA	False	NA	NA	NA	146322084	146410412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405065_146405390_146407029
18674	chr17	-	3826	7	NIC	ENSMUSG00000024118.15	novel	2160	9	NA	NA	15	1297	intron_retention	FALSE	canonical	3	212	junction_5	14.9888847706114	8	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGATAAAGTACCACTATG	3411	False	NA	NA	False	NA	NA	NA	24439690	24432730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490
18675	chr4	-	2678	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	25	2	25	-2	multi-exon	FALSE	canonical	3	663	junction_8	52.1791784782653	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGGTGTGCTTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	120427448	120397066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
18676	chr4	+	2412	11	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	210.916476359719	24	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAACTTGGTTTCAAATG	669	False	NA	NA	False	NA	NA	NA	118966000	118994521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442_118993656_118993751
18677	chr8	+	2723	22	FSM	ENSMUSG00000032939.15	ENSMUST00000079961.14	2707	22	-24	8	-24	-8	multi-exon	FALSE	canonical	3	950	junction_1	70.7360075664432	973	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAAACATTCTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	94941167	95041480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
18678	chr3	-	2859	10	NIC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	1	-9	intron_retention	FALSE	canonical	3	875	junction_9	42.9211162741863	7	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACTTATTTTTCTCTGA	183	False	NA	NA	False	NA	NA	NA	153650078	153628002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153644604_153644706_153644805_153647519_153647608_153650032
18680	chr15	+	3032	19	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-2	1	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	82.251571338512	6	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775627	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57775788_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
18681	chr15	-	3172	17	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-15	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8.78008221772439	2	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGTCAGCCCCGAG	6979	False	NA	NA	False	NA	NA	NA	98560790	98543018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545476_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
18682	chr14	+	2194	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	-21	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	1509	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	51045381	51058757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
18683	chrX	+	1787	12	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-20	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	887.99570023529	75	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543377	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551921_161552866_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
18684	chr19	+	4432	4	ISM	ENSMUSG00000025209.6	ENSMUST00000236685.2	2195	5	853	2	-42	-2	3prime_fragment	FALSE	canonical	3	153	junction_1	12.2836838484589	127	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCTGTGCGTTTTTTCT	2511	False	NA	NA	False	NA	NA	NA	44994954	45001199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_44997960_44998570_44998679_44998856_44998999_45000022
18686	chr9	-	2077	16	NNC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	-8845	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	131.193224757311	3	42	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	1660	False	NA	NA	False	NA	NA	NA	107677972	107650761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656244_107656403_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897
18687	chr16	-	1960	9	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	520	571	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	718.931487956259	6	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTTTTACAAAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	22084130	22064626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22083980
18688	chr4	-	747	1	NIC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	668	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	NA	False	NA	91	True	NA	NA	NA	129410643	129409896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129409900_129410600
18689	chr12	-	2676	9	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	-95	0	intron_retention	FALSE	canonical	0	0	junction_4	642.221729623033	1	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108854438	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841048_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301
18690	chr9	-	3260	21	NIC	ENSMUSG00000036777.9	novel	718	10	NA	NA	7	-1032	combination_of_known_junctions	FALSE	canonical	3	169	junction_1	93.3648086807872	1	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTAATTTTTTAAAAAG	7190	False	NA	NA	False	NA	NA	NA	22300477	22260404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_22260597_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
18691	chr16	+	2320	6	ISM	ENSMUSG00000022750.19	ENSMUST00000120488.3	2596	7	1805	0	503	0	3prime_fragment	FALSE	canonical	3	453	junction_5	19.2707031527134	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	1272	False	NA	NA	False	NA	NA	NA	17582459	17611246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
18692	chr5	-	1376	6	NNC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	328.107665256391	124	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGCTTGCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	130284373	130274572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_130274803_130274975_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
18693	chr14	+	1722	9	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1290	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	2505.75474844906	43	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGCTGCAGTTTCAAG	NA	False	NA	NA	False	NA	NA	NA	63359964	63380602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373139_63375526_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
18694	chr11	-	3520	6	FSM	ENSMUSG00000018442.14	ENSMUST00000018586.6	629	6	18	-2909	-8	0	multi-exon	FALSE	canonical	2	7	junction_3	222.522268548566	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCTTGTATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	70910077	70898267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70906552_70906627_70909137_70909204_70909969
18697	chr8	-	1844	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-24	-244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	439.122971814274	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTATTGTGTCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	85573587	85568722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569666_85570813_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
18698	chr17	-	3554	8	NNC	ENSMUSG00000060475.14	novel	2051	8	NA	NA	3	0	intron_retention	FALSE	canonical	3	14	junction_7	256.25696605763	545	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	13213049	13185685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13186939_13188291_13188447_13192596_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13212949
18699	chr11	-	3076	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	-7	0	-7	0	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	54678508	54608281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
18700	chr2	+	3614	6	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-1106	-7	intron_retention	FALSE	canonical	3	558	junction_4	37.711536696348	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCCAGATATTTTACTC	NA	False	NA	NA	False	NA	NA	NA	174264078	174269288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174264468_174264844_174267047_174267705_174267821_174268109_174268423_174268609_174268740_174268823
18701	chr9	-	1267	5	NIC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	48	208	combination_of_known_junctions	FALSE	canonical	3	35	junction_3	2037.2819361836	2	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAGATGGGGAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	110775095	110769102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110769888_110771396_110771507_110771597_110771713_110773258_110773312_110774891
18702	chr10	+	2993	9	FSM	ENSMUSG00000020109.14	ENSMUST00000147914.8	3041	9	42	6	-20	0	multi-exon	FALSE	canonical	3	150	junction_8	46.5154544210846	475	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGGTGGGTCTGCA	NA	False	NA	NA	False	NA	NA	NA	59715419	59735118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732270_59733312
18704	chr9	-	2981	26	NNC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	148.357697474718	74	54	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGGGTTTCCTGTGTC	9718	False	NA	NA	False	NA	NA	NA	107648182	107617702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623251_107623328_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
18705	chr11	-	1932	7	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	556.409621292323	50	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	6020	False	NA	NA	False	NA	NA	NA	102919088	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102916252_102916284_102918085_102918248_102918974
18706	chr2	+	3774	14	Antisense	novelGene_ENSMUSG00000027086.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	224	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAGGCACAGCGAGAGG	NA	False	NA	NA	False	NA	NA	NA	69517158	69543859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_69517485_69520406_69520521_69521577_69521707_69524210_69524327_69524859_69524992_69527186_69527312_69530463_69530585_69532708_69533194_69534596_69534728_69535764_69535876_69537650_69538050_69538853_69538980_69541836_69541905_69542468
18707	chr4	+	3347	6	FSM	ENSMUSG00000028788.15	ENSMUST00000030578.14	3646	6	299	0	-160	0	multi-exon	FALSE	canonical	3	460	junction_1	910.936792538319	689	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTGAATTTCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	129714312	129743771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129714395_129732770_129733472_129736462_129736556_129738854_129738986_129740257_129740333_129741506
18708	chr3	+	4763	14	FSM	ENSMUSG00000027865.11	ENSMUST00000029459.10	3008	14	87	-1842	-50	1842	multi-exon	FALSE	canonical	3	84	junction_11	11.7054581917706	168	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGAAGGTTAAGTATAAA	NA	False	NA	NA	False	NA	NA	NA	100069783	100116139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
18709	chr1	+	2402	14	Antisense	novelGene_ENSMUSG00000064823.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	109	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGCAAAAGACTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	86278215	86287085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86278421_86278536_86278756_86279086_86279216_86279919_86280039_86280228_86280354_86280845_86281002_86281452_86281578_86282741_86282870_86283774_86283920_86284086_86284177_86284278_86284462_86284674_86285173_86285826_86285940_86286918
18710	chr3	-	2605	7	NNC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	16	-445	intron_retention	FALSE	canonical	3	21	junction_4	143.239892022672	1	96	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTCAGTAAAGTGTACC	3760	False	NA	NA	False	NA	NA	NA	89319154	89310418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313230_89314715_89316474_89318464_89318688_89319052
18711	chr4	+	3660	6	NNC	ENSMUSG00000066150.13	novel	3718	5	NA	NA	-11	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	315.653861056696	444	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGATTCTATGCATGTCT	NA	False	NA	NA	False	NA	NA	NA	62278952	62309995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834_62309000_62309057
18713	chr13	+	1978	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	19	-239	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	583.835970114895	3	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGTTTATGAGGGTA	NA	False	NA	NA	False	NA	NA	NA	3588101	3615581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614918_3614995
18714	chr11	-	578	4	ISM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	-17	3363	-17	2234	5prime_fragment	FALSE	canonical	3	1121	junction_1	35.1220095603249	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTTTGAGACCAAGAAGC	8176	False	NA	NA	False	NA	NA	NA	102908011	102888235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102888267_102890469_102890674_102890975_102891183_102907875
18715	chr1	+	3012	15	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	9	-6245	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	455.756116530653	2	82	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGCCTCGAAATCCGCC	NA	False	NA	NA	False	NA	NA	NA	118555684	118606653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596462_118597118_118597262_118603304_118603357_118605117
18716	chr2	+	3081	16	FSM	ENSMUSG00000027330.17	ENSMUST00000028804.15	3089	16	10	-2	1	0	multi-exon	FALSE	canonical	3	45	junction_7	16.6951756171922	173	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTGTTTGTTATGCAGA	NA	False	NA	NA	False	NA	NA	NA	131028878	131040417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033642_131033732_131033856_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
18717	chrX	+	4111	4	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGGGTAAACATAGTGG	NA	False	NA	NA	False	NA	NA	NA	49652007	49660664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49653845_49656416_49656571_49658153_49660142_49660532
18718	chr3	+	3133	10	NIC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	24	-10	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	68.4805099784864	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATCATACTTTGTATGC	NA	False	NA	NA	False	NA	NA	NA	116306800	116343620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_116306841_116313885_116314010_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
18720	chr10	-	4573	19	NIC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	978	0	intron_retention	FALSE	canonical	3	184	junction_15	15.3268907560181	4	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	78020005	78006742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891
18721	chr3	+	4109	7	NIC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	1	91	intron_retention	FALSE	canonical	2	42	junction_1	287.465795066706	6	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACGAAGAGGACAATCT	NA	False	NA	NA	False	NA	NA	NA	41510166	41559333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_41510255_41543368_41543458_41546117_41546276_41548201_41551262_41554456_41554625_41555801_41555919_41558904
18722	chr18	+	1119	1	Intergenic	novelGene_4487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTGCACAGTCCCCTTG	10	False	NA	NA	False	NA	NA	NA	3000174	3001293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_3000200_3001300
18723	chr6	-	2068	6	NNC	ENSMUSG00000004980.17	novel	1542	11	NA	NA	0	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3558.61568590934	58	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGTATCCAAATTACTT	NA	False	NA	NA	False	NA	NA	NA	51446825	51438114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438963_51440124_51443509_51443686_51443885_51444033_51444164_51444276_51446650
18724	chr6	+	2508	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	318.922909528654	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5444	False	NA	NA	False	NA	NA	NA	125108878	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108993_125109170_125109282_125110481_125110528_125110676_125110782_125111633_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
18725	chr18	-	5688	3	ISM	ENSMUSG00000042680.9	ENSMUST00000049260.7	4923	6	152041	-2333	152026	2333	3prime_fragment	FALSE	canonical	1	3	junction_2	6	38	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTGAAGTCTTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	21281154	21257924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_21263080_21264389_21264557_21280788
18728	chr16	-	1974	11	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	800.539449371485	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAACTTGTTTTTACAAA	NA	False	NA	NA	False	NA	NA	NA	22084679	22064632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22064834_22065128_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
18729	chr7	+	1747	2	Genic_Genomic	ENSMUSG00000063902.14	novel	1378	1	NA	NA	-27	522	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTGGATTCACTAAAGA	NA	False	NA	NA	False	NA	NA	NA	83405084	83407011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_83405952_83406131
18731	chr1	-	2167	7	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	1	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	981.492174644754	117	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATTTACCCAAAAATAT	2339	False	NA	NA	False	NA	NA	NA	93729627	93720323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722574_93726101_93726193_93726497_93727106_93727500_93728134_93728473_93728633_93729419
18732	chr2	+	2923	14	NNC	ENSMUSG00000027242.15	novel	2789	13	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.000197237362	36	26	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAATAATGTCTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	121337253	121375335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121373496_121374761
18734	chr7	-	2784	19	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	10	-456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	970.833346049913	1	121	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165366	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147084_126151142_126151529_126155485_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162777_126162925_126163587_126163778_126163874_126163941_126165250
18735	chr6	+	2891	12	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-10	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	178.590579374508	8	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCTTACCTTACGCCA	5716	False	NA	NA	False	NA	NA	NA	83254364	83281912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307_83281566_83281644
18739	chr17	-	2592	17	Fusion	ENSMUSG00000063576.13_ENSMUSG00000023971.10	novel	1195	7	NA	NA	-50	10	multi-exon	FALSE	canonical	1	1	junction_6	107.000584110555	4	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGGGGCTGGTGAGAT	NA	False	NA	NA	False	NA	NA	NA	46991779	46978373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
18740	chr9	+	5505	3	Antisense	novelGene_ENSMUSG00000032330.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	161	94	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCGAAAGCCACCAGA	NA	False	NA	NA	False	NA	NA	NA	79658288	79666981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_79663647_79665774_79665865_79666924
18742	chr2	+	3320	3	NIC	ENSMUSG00000026917.16	novel	2890	14	NA	NA	3810	0	intron_retention	FALSE	canonical	3	1547	junction_2	3	4	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	27421593	27426547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_27421727_27423004_27423424_27423779
18743	chr2	-	2293	5	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	492	-3	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	215.843693445048	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534341	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534242
18744	chr5	+	2325	6	NIC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	388.365497952637	6	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478628	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_111478700_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
18745	chr13	-	1481	3	ISM	ENSMUSG00000042590.18	ENSMUST00000190801.7	1952	6	24421	7	13312	-7	3prime_fragment	FALSE	canonical	3	565	junction_1	4	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAGATACCTCACCTTT	2512	False	NA	NA	False	NA	NA	NA	106959517	106930961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_106932304_106948715_106948801_106959463
18747	chr11	-	2880	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-4	1794	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_1	159.281665262794	55	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAAAAGAGAAGCTGATAG	NA	False	NA	NA	False	NA	NA	NA	95896770	95852467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95853343_95854365_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
18748	chr4	+	2770	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	26	-4	26	0	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	292	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99082409	99148024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
18749	chr4	-	2095	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	6	7	6	-7	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	4658	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCCTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137085025	137047013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
18750	chr5	-	2360	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-43	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	944.545155628045	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTGCTTGTTAATAACT	2277	False	NA	NA	False	NA	NA	NA	138170123	138162863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163321_138163424_138164167_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167200_138167359_138167511_138167588_138167736_138167821_138167987_138168578_138168659_138169987
18751	chr17	+	2610	8	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	220.781728022433	753	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5638	False	NA	NA	False	NA	NA	NA	34128487	34134564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34128671_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
18752	chrUn_JH584304v1	-	3934	4	Intergenic	novelGene_4698	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_3	291.514436463559	1	92	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGAAAGTACTCAAATT	NA	False	NA	NA	False	NA	NA	NA	60821	55757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_57152_57410_58836_59591_60547_60661
18753	chr16	+	1866	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	19	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1079.27779556516	8	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	1374	False	NA	NA	False	NA	NA	NA	20354248	20362657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360791_20360946_20361045_20361388_20361501_20362060
18754	chr8	+	4579	5	FSM	ENSMUSG00000031631.16	ENSMUST00000034048.13	4619	5	36	4	-5	0	multi-exon	FALSE	canonical	3	40	junction_1	7.58287544405155	74	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTTTGATTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	46616723	46648623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_46616787_46622595_46623690_46634754_46635024_46644616_46644768_46645621
18755	chr2	-	4385	19	NNC	ENSMUSG00000026669.15	novel	4867	20	NA	NA	1573	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	180.955531335706	1	204	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATAGTTTCATATAAAT	NA	False	NA	NA	False	NA	NA	NA	5015582	4994547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998663_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499
18756	chr9	+	340	1	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	94921	477	7058	288	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTTGTGTCTCCAGTGT	NA	False	NA	NA	False	NA	NA	NA	123290912	123291252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_123290900_123291300
18757	chr9	+	3678	13	ISM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	103380	782	-1902	0	3prime_fragment	FALSE	canonical	3	302	junction_7	26.1990245789588	2	116	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTATTGAAATGGCCTG	2256	False	NA	NA	False	NA	NA	NA	109863907	109912241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
18758	chr2	-	3520	8	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-4	-5	intron_retention	FALSE	canonical	0	0	junction_1	60.0057820343258	11	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGAAAGGCATGTGATG	NA	False	NA	NA	False	NA	NA	NA	29677676	29666126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29666232_29666386_29667969_29668743_29668881_29669834_29669908_29672131_29673386_29674964_29675040_29676487_29676620_29677514
18759	chr4	-	2389	12	NNC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	184.156284687986	4	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGTTTTTATGCGTGT	5495	False	NA	NA	False	NA	NA	NA	132073002	132059231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132060314_132060928_132061052_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
18762	chr2	-	2399	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	113	0	-9	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	1486	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	144112713	144092042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
18763	chr7	+	1222	10	Antisense	novelGene_ENSMUSG00000001794.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	210	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCAGTCCCATGCCTC	8472	False	NA	NA	False	NA	NA	NA	29886366	29893361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_29886959_29887095_29887152_29889473_29889593_29889902_29889982_29890082_29890153_29891586_29891652_29891744_29891802_29891926_29892018_29892291_29892326_29893302
18764	chr16	-	2316	5	NNC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	854.7122322747	1663	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	17019353	16969878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16971192_16971481_16972147_16977853_16978041_16994275_16994372_17019298
18765	chrX	+	1804	12	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	10	39	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	1180.69361880532	18	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543467	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556235_161556443_161556515_161557530_161557626_161558731_161558790_161560767_161560879_161561343
18766	chr8	+	3505	20	NNC	ENSMUSG00000031446.15	novel	2570	16	NA	NA	-730	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	112.151386607592	5	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTACTAATACATTGG	NA	False	NA	NA	False	NA	NA	NA	13154890	13197940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13154951_13156193_13156310_13165469_13165576_13171678_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
18767	chr13	-	2654	13	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-3742	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	687.797794090353	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGTTGCTTTTGGTCAA	2350	False	NA	NA	False	NA	NA	NA	74491617	74470380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472070_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491467
18768	chr12	-	3542	21	FSM	ENSMUSG00000015143.16	ENSMUST00000021554.16	3734	21	192	0	-88	0	multi-exon	TRUE	canonical	3	154	junction_2	44.8659113358906	385	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTTTGCTTGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	80306953	80214320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80215255_80215631_80215791_80217459_80217541_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80306760
18769	chr14	+	1932	14	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	18	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	477.579089766552	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACCAAAGGACTAACCAT	NA	False	NA	NA	False	NA	NA	NA	45567262	45587146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584253_45586287
18770	chr1	-	4206	24	Antisense	novelGene_ENSMUSG00000036104.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	126	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGGAGCGTCAGGCCCCG	NA	False	NA	NA	False	NA	NA	NA	127871603	127796542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127796565_127796659_127796716_127801814_127801891_127816890_127817025_127818753_127818833_127829314_127829433_127831402_127831575_127837587_127837686_127843373_127843456_127845955_127846027_127847304_127847375_127852460_127852556_127853009_127853161_127855180_127855287_127855685_127855858_127858125_127858176_127858437_127858814_127862151_127862284_127865070_127865301_127865723_127865823_127865935_127866040_127866313_127866431_127866784_127866878_127870100
18771	chr5	-	3261	12	NNC	ENSMUSG00000029405.17	novel	2716	12	NA	NA	-6	2	intron_retention	TRUE	non_canonical	0	0	junction_1	674.733862440568	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTTCTTCAGTTAACAT	NA	False	NA	NA	False	NA	NA	NA	92231378	92201573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202082_92202310_92202913_92203242_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
18772	chr7	-	1840	16	NIC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-319	0	intron_retention	FALSE	canonical	3	1600	junction_14	133.101698795403	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33928741	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707
18773	chr8	+	2717	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	-37	1	-37	-1	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	851	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTGCTCCTCTGGTCTT	2120	False	NA	NA	False	NA	NA	NA	70495425	70524996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
18774	chr2	+	481	2	FSM	ENSMUSG00000027176.9	ENSMUST00000137961.2	644	2	-113	276	-18	-276	multi-exon	FALSE	canonical	3	327	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATTCTGGAAACTGTA	6882	False	NA	NA	False	NA	NA	NA	104420849	104439498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_104421048_104439215
18775	chr1	+	2934	8	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	1	207	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	50.2873376361347	4	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAATGTTGCTTGTATGT	NA	False	NA	NA	False	NA	NA	NA	173246762	173293813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173247122_173255324_173255465_173280393_173280515_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
18776	chr13	+	4994	13	NIC	ENSMUSG00000021457.15	novel	5363	14	NA	NA	22	-4	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	14.4575528127458	92	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGTCTTGTGATGACCT	NA	False	NA	NA	False	NA	NA	NA	52737494	52802814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075_52797189_52799758
18778	chr11	-	2214	10	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-29	2	intron_retention	FALSE	canonical	0	0	junction_5	618.027687261843	3	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3750	False	NA	NA	False	NA	NA	NA	120463696	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454099_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
18780	chr14	+	3882	7	NNC	ENSMUSG00000041445.10	novel	3974	7	NA	NA	3081	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	20.0969870599771	4	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTGTTTACTGTTG	8227	False	NA	NA	False	NA	NA	NA	34100758	34126244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_34100981_34118121_34118251_34118328_34118436_34118515_34118597_34119503_34119678_34119786_34121581_34124869
18782	chr2	+	2274	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-4	1	intron_retention	FALSE	canonical	1	11	junction_6	989.955036962089	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116370	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118574_130118695_130118779_130118951_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
18783	chr6	+	2509	11	NIC	ENSMUSG00000030204.11	novel	1764	12	NA	NA	1	0	intron_retention	FALSE	canonical	3	485	junction_5	31.3687742827162	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGTCTGTGTGTG	6587	False	NA	NA	False	NA	NA	NA	134988587	135000735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134998542_135000241
18784	chr15	-	4698	4	NIC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	2	-1291	intron_retention	FALSE	canonical	3	20	junction_1	14.2672897060218	135	71	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCCAGACCAGCTTGGGC	247	False	NA	NA	False	NA	NA	NA	83251481	83239338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_83243152_83248020_83248130_83249229_83249715_83251190
18785	chr11	+	3440	12	Antisense	novelGene_ENSMUSG00000065686.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	498	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCAATCGCAGCCCGGAAC	1270	False	NA	NA	False	NA	NA	NA	6565624	6575812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_6566713_6567305_6567422_6567516_6567636_6567966_6568213_6568463_6568603_6568994_6569111_6569555_6569713_6569970_6570146_6570743_6571066_6573815_6574283_6575147_6575213_6575382
18786	chr1	-	1315	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	213	570	64	-570	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTTTTACTTAAAAGATG	7509	False	NA	NA	False	NA	NA	NA	160040232	160030506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
18788	chr2	-	3909	33	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	117	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACACTTCCGTTTCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	180997824	180961525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964313_180964603_180964687_180965154_180965236_180965474_180965542_180970404_180970470_180972585_180972669_180976702_180976769_180977665_180977835_180980844_180981035_180982290_180982373_180983315_180983371_180988621_180988698_180988803_180988886_180990965_180991101_180991255_180991368_180991459_180991503_180991687_180991772_180991916_180991996_180992427_180992504_180992817_180992963_180993037_180993158_180993365_180993482_180993593_180993744_180993830_180993978_180994549_180994638_180995764_180995964_180996136_180996233_180996798_180996917_180997100_180997345_180997441_180997604_180997714
18789	chr18	-	4928	4	FSM	ENSMUSG00000053950.11	ENSMUST00000066743.11	5012	4	70	14	70	-14	multi-exon	FALSE	canonical	3	132	junction_3	18.0800688297608	155	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACGCTAAGACATTACTC	6006	False	NA	NA	False	NA	NA	NA	80194627	80169539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_80174210_80180698_80180789_80185863_80185985_80194580
18790	chr6	-	3082	24	NNC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	4	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	48.9253511085655	1	88	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATTCATTCCAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	30873695	30748423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787294_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
18791	chr14	-	2358	10	NNC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-84	-72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	203.869663035413	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTTGTTTGGGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	40688848	40628475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40629086_40629212_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
18792	chr5	+	2467	9	ISM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	12662	17	-2372	-17	3prime_fragment	FALSE	canonical	3	618	junction_8	565.263199204583	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTTATACATTTATT	NA	False	NA	NA	False	NA	NA	NA	29953347	29991459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
18793	chr6	-	2327	3	ISM	ENSMUSG00000055850.13	ENSMUST00000133978.2	728	4	35	-898	0	-1	intron_retention	FALSE	canonical	3	875	junction_1	86.5	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGTGTGGTTCTGCTGTG	8447	False	NA	NA	False	NA	NA	NA	72339376	72336697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_72337933_72338099_72338210_72338394
18794	chr3	+	2432	6	NIC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	-28	1	intron_retention	FALSE	canonical	3	4254	junction_2	529.439930492591	5816	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAACCACAGGCTGGTT	NA	False	NA	NA	False	NA	NA	NA	121220117	121251849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245649_121248595_121248743_121250730
18796	chr17	+	3558	4	FSM	ENSMUSG00000044501.18	ENSMUST00000121315.2	2860	4	0	-698	0	698	multi-exon	FALSE	canonical	3	6	junction_1	15.7973274814304	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGGCTATAGTAAGTTG	NA	False	NA	NA	False	NA	NA	NA	22580502	22596960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_22580689_22591016_22591070_22592623_22592751_22593768
18797	chr13	-	1881	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-13	-89	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_12	642.382869851999	5	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334878	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330577_97330776_97334533
18798	chr11	+	2010	10	NIC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	38	0	intron_retention	FALSE	canonical	3	1895	junction_3	141.615110444376	22	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471268	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480536_69480614_69480689_69481481_69481589_69482175
18799	chr4	+	3794	17	NNC	ENSMUSG00000006445.4	novel	969	4	NA	NA	-5160	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	33.5838502855167	222	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTTTCATTCCTGGA	9581	False	NA	NA	False	NA	NA	NA	141023390	141056695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141023467_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
18800	chr6	+	1450	13	ISM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	-4	3920	-4	-3920	5prime_fragment	FALSE	canonical	0	0	junction_7	225.432300751738	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACAGGAGTCATCTCCA	5433	False	NA	NA	False	NA	NA	NA	125108867	125117796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752
18801	chr15	-	5908	12	ISM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	2245	4	1206	-4	3prime_fragment	FALSE	canonical	3	277	junction_11	26.3109190795365	9	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCCTCAGTAGGATTTT	2198	False	NA	NA	False	NA	NA	NA	96595366	96585276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316
18802	chr8	+	4099	16	FSM	ENSMUSG00000031967.16	ENSMUST00000098320.6	4111	16	-6	18	-6	-18	multi-exon	FALSE	canonical	3	9	junction_13	180.225291109643	11	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATTTCTAATTGTATG	7489	False	NA	NA	False	NA	NA	NA	124204635	124230637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124227971_124228173_124228253_124228449_124228586
18803	chr10	-	1721	4	Antisense	novelGene_ENSMUSG00000001436.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGGAGGGGTGCACCAGG	NA	False	NA	NA	False	NA	NA	NA	76886258	76877905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_76878400_76878608_76878809_76880594_76880733_76885369
18804	chr14	+	1841	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-23	1269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGGCAGGGTGCACG	NA	False	NA	NA	False	NA	NA	NA	63359939	63380581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63380386_63380467
18805	chr6	+	2836	23	NNC	ENSMUSG00000030088.16	novel	3052	23	NA	NA	15	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	49.6575046553393	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAGCAGAGGTCGCCT	NA	False	NA	NA	False	NA	NA	NA	90527801	90576130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90527880_90534183_90534219_90536288_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
18806	chr14	+	2790	19	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	7458	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	174.59462749643	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAAAGCCCTGCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	32054806	32070099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066747_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462_32069723_32069786
18807	chr5	-	2289	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	573.544991385033	1	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGTAGAGTTTT	2286	False	NA	-123	True	NA	NA	NA	138170114	138162851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167165_138167410_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
18808	chr4	+	3716	11	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	-1	intron_retention	FALSE	canonical	2	9	junction_6	62.929245983088	1	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGCAGCCTTGGTGG	NA	False	NA	NA	False	NA	NA	NA	115714228	115736446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115729427_115729504_115730407_115730504_115731816_115732012_115732577_115732743_115733777
18809	chr18	+	1587	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	9	-274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1591.25436253322	615	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCTGTCACTGTCACCA	NA	False	NA	NA	False	NA	NA	NA	77861700	77870081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869567_77870041
18810	chr11	-	2474	11	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	7	50	intron_retention	FALSE	canonical	3	982	junction_5	83.661759484247	158	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGTGCACATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	96807211	96798591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
18811	chr10	-	5128	7	NIC	ENSMUSG00000038151.14	novel	4025	7	NA	NA	-69	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	17.9814719456816	184	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATGCTTGTCTAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	44404566	44313169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44404361
18813	chr5	-	1900	9	NNC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-14	0	intron_retention	FALSE	non_canonical	0	0	junction_4	487.913926835461	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	NA	False	NA	NA	NA	100186768	100182579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184742_100184943_100185076_100185426_100185589_100185671_100185841_100186578_100186680_100186735
18814	chr11	-	2704	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	10	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	167.023026430563	17	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGAGCTGTGTTCCGTGC	7779	False	NA	NA	False	NA	NA	NA	113456572	113135682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354740_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
18815	chr4	+	2371	7	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	259	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	213.211684065912	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTCAGATGATCAGATTA	5307	False	NA	NA	False	NA	NA	NA	89055617	89099311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89074783_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
18816	chr3	+	2243	6	NIC	ENSMUSG00000028156.13	novel	856	8	NA	NA	4	935	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	780.454482977707	30	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGATAACTTGATAAAGAT	NA	False	NA	NA	False	NA	NA	NA	138233049	138262910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_138233076_138252081_138252189_138253419_138253516_138256653_138256768_138259342_138259483_138261150
18817	chr3	+	1864	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	111	2	39	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	2	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCGTTGTCATGTGTTT	3915	False	NA	NA	False	NA	NA	NA	88204533	88229072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
18818	chr8	+	4043	7	NIC	ENSMUSG00000055681.15	novel	2753	8	NA	NA	-8	8	intron_retention	FALSE	canonical	3	1283	junction_6	37.5917396363734	5	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCACCAGGCGCTCACTC	719	False	NA	NA	False	NA	NA	NA	70755434	70765651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
18819	chr15	+	2439	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	18	-1513	18	-1	multi-exon	FALSE	canonical	3	114	junction_1	555.512064964378	121	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99291117	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
18820	chr16	-	4009	6	NNC	ENSMUSG00000022519.15	novel	3698	6	NA	NA	22	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	11.9498953970317	44	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTTGGCCTTCTTGATT	NA	False	NA	NA	False	NA	NA	NA	4359656	4298076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311840_4359363
18822	chr17	-	1999	7	NNC	ENSMUSG00000024026.14	novel	2024	7	NA	NA	-8	1	intron_retention	FALSE	canonical	1	1	junction_1	1516.11971822808	3470	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTCTGGGCAGCAAGT	NA	False	NA	NA	False	NA	NA	NA	30831594	30811838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30813201_30814798_30814901_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
18823	chr18	+	2487	12	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	380.384103395111	2	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACAACTTCTGTTTAAT	6432	False	NA	-90	True	NA	NA	NA	77126250	77240851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223680_77240307
18824	chr14	-	5278	1	NIC	ENSMUSG00000034248.8	novel	4174	4	NA	NA	37842	0	mono-exon	FALSE	NA	NA	NA	NA	NA	102	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTGGGGTCTTTGTGG	3028	False	NA	NA	False	NA	NA	NA	69484574	69479296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_69479300_69484600
18825	chr11	+	4251	1	NIC	ENSMUSG00000034757.16	novel	1939	4	NA	NA	28	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	24	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGGAGCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	102175804	102180055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102175800_102180100
18826	chr2	-	2261	9	Antisense	novelGene_ENSMUSG00000065272.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCGGAACCAGACTGCGGA	NA	False	NA	NA	False	NA	NA	NA	130121228	130116346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_130116396_130116552_130116641_130116948_130117064_130117579_130117743_130117893_130118093_130118353_130118572_130119393_130119542_130119762_130119888_130120072
18827	chr2	-	2006	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	129.512007165359	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCGTTTCTAAGGGGT	NA	False	NA	NA	False	NA	NA	NA	73044709	72923144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72924069_72927488_72927584_72929694_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
18829	chr2	-	3452	13	NNC	ENSMUSG00000037820.16	novel	3596	13	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_10	54.7278620895142	234	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGTCTGCCTTGTCCTT	8876	False	NA	NA	False	NA	NA	NA	157988286	157958322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157959872_157960766_157960904_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250_157973429_157974348_157974478_157976170_157976272_157980681_157980870_157984914_157985095_157988210
18830	chr9	+	3304	16	NNC	ENSMUSG00000032058.15	novel	3430	15	NA	NA	3	-193	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	198.164196788645	3	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAATTGTGTAAATG	10	True	NA	NA	False	NA	NA	NA	50768259	50792538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_50768399_50769135_50769227_50770150_50770252_50772568_50772659_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
18833	chr8	-	2037	2	NNC	ENSMUSG00000036120.11	novel	3282	5	NA	NA	1915	-552	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATAGCGCACGCGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	70586362	70584007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70584246_70584563
18834	chr17	-	2267	15	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.911519263177	6	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTTCTATGCTCAC	NA	False	NA	NA	False	NA	NA	NA	28841438	28808563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28809012_28810169_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28821635_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
18835	chr13	+	4087	6	NIC	ENSMUSG00000038683.17	novel	3136	9	NA	NA	-2	-5	intron_retention	FALSE	canonical	3	613	junction_2	48.3669308515643	4	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGAAATAATACAGAGCT	NA	False	NA	NA	False	NA	NA	NA	41154711	41166478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_41154890_41158212_41158376_41161491_41162841_41162923_41164759_41165809_41165934_41166040
18836	chr16	-	4832	3	NIC	ENSMUSG00000046962.17	novel	3072	4	NA	NA	-3	-34	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	4.5	50	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTTCAAATAAATTTTTG	NA	False	NA	NA	False	NA	NA	NA	97763818	97749066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_97752070_97752669_97754294_97763613
18838	chr3	+	2401	20	NIC	ENSMUSG00000028034.16	novel	2526	20	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	1	416	junction_13	332.523108563197	1	43	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGTCGGTAAGTTGG	NA	False	NA	NA	False	NA	NA	NA	151916116	151938405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
18839	chrX	-	3827	14	NIC	ENSMUSG00000036932.15	novel	2221	16	NA	NA	9720	-2	intron_retention	FALSE	canonical	3	37	junction_13	305.929314649855	13	144	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGGTTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	47592583	47563823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47564066_47564439_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459
18840	SIRV7	-	2388	5	NNC	SIRV7A	novel	2462	5	NA	NA	0	-77	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1838.52148478064	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAACTATTTAATTCCG	NA	False	NA	NA	False	NA	NA	NA	147925	1082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3115_43028_43078_114680_114989_147608
18841	chr15	+	5049	11	NNC	ENSMUSG00000022401.13	novel	1641	11	NA	NA	-2	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	15.7050947147733	56	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGGTCTGGCGTGTCT	NA	False	NA	NA	False	NA	NA	NA	81284368	81341673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81284489_81298632_81298750_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81332519_81332698_81335101_81335223_81337065_81338189_81339157
18842	chrX	-	419	1	ISM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	3017	14	2940	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTAAGTCTATAATGAATA	NA	False	NA	NA	False	NA	NA	NA	7534612	7534193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_7534200_7534600
18843	chr11	-	2873	5	NIC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	245.457735669504	13	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	54678459	54608281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54678385
18844	chr2	+	2601	14	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	5.87845328447471	542	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCGTGTCGGTGCTGTGC	2748	False	NA	NA	False	NA	NA	NA	30023808	30042020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30025420_30025565_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711_30040650_30041731
18846	chr7	+	2755	20	Antisense	novelGene_ENSMUSG00000084453.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAGGCACGACGCCGGAA	NA	False	NA	NA	False	NA	NA	NA	126146104	126165551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126146244_126146342_126146519_126146605_126146700_126146792_126146846_126146936_126147103_126151150_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156672_126156857_126156998_126157806_126157910_126158024_126158184_126161736_126161865_126162174_126162286_126162870_126162934_126163596_126163782_126163876_126163943_126165251_126165397_126165522
18847	chr8	+	3041	22	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	162	-695	intron_retention	FALSE	canonical	3	158	junction_5	32.4626420559341	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTCACCCAGTGCACTA	NA	False	NA	NA	False	NA	NA	NA	85811078	85824216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
18848	chr5	+	2525	15	NIC	ENSMUSG00000029521.8	novel	634	4	NA	NA	10	-4	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	55.8383234646863	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTAGTTTGTTGTGGCT	9438	False	NA	NA	False	NA	NA	NA	110988104	111022007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
18849	chr5	-	2416	8	NIC	ENSMUSG00000023452.20	novel	2491	9	NA	NA	-19	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	336.343968737545	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCGTAGCTTTGTATTTT	3978	False	NA	NA	False	NA	NA	NA	32903675	32893647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32897967_32898134_32899553_32899820_32903526
18850	chr5	+	2169	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	405	14	405	-14	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	1	66	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864466	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
18851	chr4	+	2490	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-13	-136	multi-exon	FALSE	non_canonical	0	0	junction_1	43.4506522813348	1	108	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAATCAGAATTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	147216481	147669519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217433_147447267_147447362_147639766_147639863_147661528_147661587_147665698_147665826_147667290_147667431_147667838
18852	chr17	+	2353	15	Antisense	novelGene_ENSMUSG00000059208.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1074	26	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGCTCACGTGACCCCGA	NA	False	NA	NA	False	NA	NA	NA	33865209	33904406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_33865633_33867785_33867839_33868568_33869370_33871244_33871301_33877361_33877439_33877842_33877888_33879185_33879289_33882199_33882259_33883557_33883612_33884465_33884624_33885622_33885659_33887957_33888053_33889046_33889109_33896249_33896415_33904240
18853	chr3	+	1539	7	Antisense	novelGene_ENSMUSG00000027984.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	323	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	131027096	131043582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_131027936_131029190_131029307_131034581_131034661_131036166_131036251_131038804_131038938_131042065_131042222_131043450
18858	chr13	-	4127	1	NIC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-1	694	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACACAGTAGCTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	100922984	100918857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100918900_100923000
18859	chr11	-	3092	19	NIC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	22	3	intron_retention	FALSE	canonical	3	224	junction_11	39.6456526970837	10	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGCTTCAGGATGAGC	NA	False	NA	NA	False	NA	NA	NA	117671425	117656810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
18860	chr2	+	2335	17	NNC	ENSMUSG00000027642.16	novel	1944	17	NA	NA	593	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	581.54097219693	2	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGATGGAGCCTTGCA	NA	False	NA	NA	False	NA	NA	NA	157122081	157167976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157122201_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
18861	chr14	+	4271	23	NNC	ENSMUSG00000039367.12	novel	4196	24	NA	NA	-5	-7	intron_retention	FALSE	canonical	0	0	junction_4	78.0620647332187	1	113	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCAGTATCCCTCTCATT	NA	False	NA	NA	False	NA	NA	NA	20724385	20744911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732844_20733250_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
18862	chrX	+	1920	2	NIC	ENSMUSG00000008682.14	novel	762	6	NA	NA	0	-4	intron_retention	FALSE	canonical	3	9774	junction_1	0	56	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTTTTTGTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	73314463	73316737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73315924_73316277
18864	chr5	-	2805	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	312	-365	-15	365	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	116	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGACTTGTTTTCATTGT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
18865	chr2	+	1619	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	75	2	75	-2	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	2	34	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTCTCTGCGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	31360293	31410682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
18866	chr13	-	1399	3	NIC	ENSMUSG00000058672.8	novel	1610	4	NA	NA	96	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	163.5	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATGGTCCTTTTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	34261894	34258260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_34259512_34260531_34260641_34261855
18867	chr15	+	2281	17	NIC	ENSMUSG00000008690.16	novel	3302	20	NA	NA	0	13	intron_retention	FALSE	canonical	3	166	junction_13	218.076212308908	45	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACCTGTTCACCGGACAG	NA	False	NA	NA	False	NA	NA	NA	89239965	89255779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254692_89254803_89254879_89254955_89255197_89255296_89255447_89255513
18869	chr9	+	2395	12	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	-266	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	515.114157290714	3	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	25163468	25219862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163737_25176689_25176793_25188839_25188947_25197963_25198065_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
18870	chr11	-	2792	19	NNC	ENSMUSG00000018425.19	novel	3813	18	NA	NA	-46328	-903	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	54.6152931596415	4	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCAAGGCCTTCTTAT	7620	False	NA	NA	False	NA	NA	NA	86744900	86660574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86729849_86729926_86744785
18871	chr13	-	2158	9	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1233.81560109281	1	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAAAGCTTTCACAATTC	NA	False	NA	NA	False	NA	NA	NA	100922977	100915258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917774_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
18872	chr7	-	2912	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	-7	-3	-7	3	multi-exon	FALSE	canonical	3	174	junction_8	14.1585607937389	285	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGTTTCCTTCTTCTCTG	8917	False	NA	NA	False	NA	NA	NA	121580941	121522058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
18873	chr16	+	2154	10	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-86	907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1923.64933536029	1	111	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGATTTGCAAACAGGG	NA	False	NA	NA	False	NA	NA	NA	84571187	84620825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606378_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674_84620586_84620633
18874	chr8	+	3642	7	Genic_Genomic	ENSMUSG00000090118.2	novel	1119	2	NA	NA	5363	-708	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	117	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATCCCGCCCAGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	125563799	125589734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_125566700_125567180_125567245_125568031_125568125_125568430_125568524_125569103_125569159_125587684_125588010_125589622
18875	chr10	+	2535	13	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	253.042637491963	8	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAACTGCAGAAGTTTG	1006	False	NA	NA	False	NA	NA	NA	127851062	127865849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854457_127855334_127856136_127857541_127857601_127858731_127858843_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
18876	chr14	-	3517	30	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	116.181661027446	1	62	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGACACTAGCTTTCTGCA	9795	False	NA	NA	False	NA	NA	NA	55873091	55863094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871613_55871736_55871867_55872463_55872504_55872588_55872669_55872819_55872907_55872986
18877	chr2	+	2389	16	NNC	ENSMUSG00000027012.16	novel	2631	16	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	146.279397805098	12	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAATTTTCACTTTT	NA	False	NA	NA	False	NA	NA	NA	71042311	71093638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71042419_71044782_71044900_71049644_71049710_71058989_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
18878	chr1	+	4187	29	NIC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	2	10	junction_16	32.5407711296811	1	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTACCAGTGTCGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	10109989	10206991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
18879	chr8	-	2321	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	-20	3	-20	0	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	1041	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	110419912	110397959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
18880	chr8	+	3633	12	NNC	ENSMUSG00000031684.12	novel	680	4	NA	NA	-360	0	intron_retention	TRUE	canonical	1	5	junction_1	37.354234605667	5	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGGAAATGTCGTGG	9682	False	NA	NA	False	NA	NA	NA	79235614	79460632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_79235960_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
18881	chr4	+	2932	7	NIC	ENSMUSG00000028884.15	novel	1813	9	NA	NA	-17	-269	intron_retention	FALSE	canonical	3	1345	junction_6	93.7152898707332	57	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGAAATGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	132495669	132505794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132502445_132503558_132504059_132505100
18882	chr2	-	822	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	-32	-40	-32	40	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75022198	75021376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75021400_75022200
18883	chr11	-	2758	18	NIC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_17	40.9030417393305	801	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3582	False	NA	NA	False	NA	NA	NA	54846948	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
18884	chr9	+	906	3	NNC	ENSMUSG00000111147.2	novel	3468	7	NA	NA	20169	112	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	2	30	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATCTGTAACAAGATCT	NA	False	NA	NA	False	NA	NA	NA	60959662	60966510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_60959709_60960349_60960452_60965752
18885	chr2	-	2855	11	NIC	ENSMUSG00000037376.15	novel	2828	11	NA	NA	34	-71	combination_of_known_junctions	FALSE	canonical	3	4	junction_10	110.380659537801	1	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTTTTATTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	132657899	132646197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657550
18886	chr19	-	3350	18	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	-12	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	454.520051822415	1	107	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTATAAAAGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	40576840	40538716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551341_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558918_40559037_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
18887	chrX	-	2875	15	ISM	ENSMUSG00000031161.16	ENSMUST00000137499.8	5037	27	9118	2	-48	-2	3prime_fragment	FALSE	canonical	3	352	junction_9	45.6394476705565	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGAAAGTGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	7804959	7796364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624
18888	chr15	-	1410	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	206	0	-206	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	15	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGATTCTGTGGAAGGCG	158	False	NA	NA	False	NA	NA	NA	98832319	98829511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
18889	chr6	+	2354	17	NIC	ENSMUSG00000025609.16	novel	11395	18	NA	NA	3	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	177.325442336964	28	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATTTAATTATGTATATT	NA	False	NA	NA	False	NA	NA	NA	31375782	31484896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
18891	chr13	-	4160	8	NNC	ENSMUSG00000100235.9	novel	3886	7	NA	NA	-20	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.60550172668394	46	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATCGTCAGTGTCGTG	NA	False	NA	NA	False	NA	NA	NA	67256633	67217468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67219593_67222147_67222246_67222896_67223024_67232637_67232852_67245856_67247112_67250104_67250200_67250761_67250888_67256512
18892	chr18	-	2708	12	NIC	ENSMUSG00000001380.8	novel	1989	13	NA	NA	31	0	intron_retention	FALSE	canonical	3	550	junction_7	67.8341438685576	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	NA	False	NA	NA	NA	36916227	36899580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_36900007_36900242_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
18893	chr1	+	2679	3	NIC	ENSMUSG00000026520.9	novel	2717	5	NA	NA	450	-11	intron_retention	FALSE	canonical	3	1158	junction_1	0	486	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTTGAGTTCTAGT	496	False	NA	NA	False	NA	NA	NA	180732337	180735641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180734253_180734354_180734519_180735041
18894	chr7	+	1835	7	NNC	ENSMUSG00000033685.14	novel	464	4	NA	NA	-842	320	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	177.472767864068	14	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGTCTTCTTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	100144443	100148829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100144539_100145491_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
18895	chr6	+	1992	9	NIC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-788	-92	intron_retention	FALSE	canonical	3	5813	junction_4	261.416782887021	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	4903	False	NA	NA	False	NA	NA	NA	85436931	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444768_85445034
18896	chr10	-	3543	7	NIC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	-5	19	intron_retention	FALSE	canonical	3	2056	junction_1	94.16725663532	10	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCACTGTGGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	69188745	69174134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69181015_69181904_69182062_69185925_69185989_69188665
18897	chr6	-	2139	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-29	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	595.124346380083	1	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAAATCATGTTGTTTG	8927	False	NA	NA	False	NA	NA	NA	47790327	47773085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780693_47783499_47783579_47783939_47784146_47785108_47785278_47790150
18898	chrX	-	2868	1	FSM	ENSMUSG00000083327.2	ENSMUST00000120233.2	2406	1	-255	-207	-255	207	mono-exon	FALSE	NA	NA	NA	NA	NA	1	115	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTGAAGAGTGAATTACC	NA	False	NA	NA	False	NA	NA	NA	103392095	103389227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_103389200_103392100
18899	chr11	-	1886	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	63	3	0	-2	multi-exon	FALSE	canonical	3	5636	junction_4	454.292680988809	49	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCATTGTTTTTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	120239305	120236518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
18900	chr6	-	3891	8	NIC	ENSMUSG00000048930.13	novel	2848	9	NA	NA	-11	-3	combination_of_known_junctions	FALSE	canonical	3	225	junction_7	58.553307301282	1	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGTTATAAAAAAACCACC	NA	False	NA	NA	False	NA	NA	NA	113354348	113343618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113351846_113351969_113352221_113352800_113353026_113354276
18905	chr7	-	1891	6	FSM	ENSMUSG00000030605.16	ENSMUST00000206338.2	2330	6	434	5	-302	-4	multi-exon	FALSE	canonical	3	1186	junction_2	28.6733325583198	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACCCTCTGTGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	78793100	78783520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616
18906	chr17	+	2912	4	Antisense	novelGene_ENSMUSG00000069743.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	69	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGCGCTAGGACGCGGA	NA	False	NA	NA	False	NA	NA	NA	22036542	22064733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_22039170_22040050_22040180_22042825_22042863_22064614
18908	chr6	+	1793	3	ISM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	4018	4	4018	-4	3prime_fragment	FALSE	canonical	3	4116	junction_2	222.5	18	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGGTCTTATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	122688544	122691588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122688763_122689587_122689675_122690100
18909	chr10	-	1975	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	798.942865591363	2	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8750	False	NA	NA	False	NA	NA	NA	128401798	128393636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394408_128394918_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401637
18910	chrX	-	2736	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	-37	0	-37	0	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	616	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	NA	False	NA	NA	NA	12539944	12521117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
18911	chr16	+	2397	7	NIC	ENSMUSG00000002845.15	novel	2667	9	NA	NA	-12	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	305.32005065723	13	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTGTGAGCATTACCCC	NA	False	NA	NA	False	NA	NA	NA	38383210	38412530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38383493_38384476_38384664_38393415_38393639_38405741_38405881_38406582_38406771_38408544_38408666_38411273
18912	chr2	-	2405	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	26	7	20	-7	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	854	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCGTATAGTTTGTATTGT	NA	False	NA	NA	False	NA	NA	NA	168797166	168767287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
18913	chr18	+	2419	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	28	77	28	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	634	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCTTAAAATGTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	67338464	67340883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67338500_67340900
18914	chr17	-	2425	16	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	190.710204819308	3	29	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTTCTATGCTCAC	NA	False	NA	NA	False	NA	NA	NA	28841444	28808563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818491_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
18915	chr4	+	2358	6	Antisense	novelGene_ENSMUSG00000096065.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATACATCGAGAATGCTGG	NA	False	NA	NA	False	NA	NA	NA	147696414	147787041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147696748_147696997_147698506_147699736_147699866_147702875_147702963_147725323_147725461_147786877
18916	chr17	-	2602	6	NNC	ENSMUSG00000079553.12	novel	2357	11	NA	NA	-1981	2	intron_retention	FALSE	canonical	0	0	junction_5	242.075194929179	4	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	34104181	34094639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34102853_34103562_34104045_34104137
18917	chr7	+	2261	16	Antisense	novelGene_ENSMUSG00000084453.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGGGGGCGTCACTTCC	NA	False	NA	NA	False	NA	NA	NA	126151144	126165580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126151511_126155454_126155680_126155881_126156059_126156339_126156435_126156539_126156653_126156849_126156998_126157806_126157907_126158020_126158184_126161736_126161865_126162179_126162286_126162416_126162470_126162798_126162925_126163587_126163782_126163876_126163943_126165251_126165395_126165522
18918	chr5	-	3654	9	NNC	ENSMUSG00000039474.14	novel	3787	8	NA	NA	-16	-4	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	53.8468604005842	152	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATAGCCTTGCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	37146293	37123454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_37126023_37126736_37126867_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
18919	chr8	+	2690	19	NNC	ENSMUSG00000031753.17	novel	2737	19	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	128.861311704953	789	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACATGCCATTGTGTTGG	9622	False	NA	NA	False	NA	NA	NA	111573659	111608853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606307_111607226_111607311_111607502_111607609_111608002_111608132_111608362
18920	chr1	-	2189	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	65	4	65	-4	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	1919	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTTTTTATACCTTT	NA	False	NA	NA	False	NA	NA	NA	121495653	121481567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
18921	chr14	-	2628	9	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5077	0	intron_retention	FALSE	canonical	3	300	junction_3	35.1814493021535	45	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607996	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59593900_59596924_59597033_59599182_59599305_59607902
18922	chr9	-	3132	19	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	10842	-5	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_18	138.463894210729	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAATTTGTTTTTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	31032181	31000702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31031995
18923	chr3	-	2704	16	FSM	ENSMUSG00000015748.14	ENSMUST00000161476.8	2732	16	32	-4	32	0	multi-exon	FALSE	canonical	1	3	junction_15	112.760197863529	5	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTATGATATTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	95763033	95737929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95762631
18924	chr4	+	2307	15	NIC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	755	junction_7	71.3067890404925	1000	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGGTTTGGAAACTAGT	9113	False	NA	NA	False	NA	NA	NA	152018190	152065679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152064044_152064374_152064505_152065159
18926	chr9	+	2031	21	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	190.341870065417	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385260	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386142_108386669_108386705_108387293_108387348_108387486_108387548_108388337_108388401_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391426_108392013_108392073_108392165_108392233_108392305_108392432_108392994
18927	chr12	+	1832	9	NNC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	0	1	intron_retention	FALSE	canonical	3	18	junction_6	800.393457931785	25	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTGGTCTGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80992307	80997278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995241_80995868_80995943_80996267_80996379_80996493
18928	chr14	-	3785	12	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6343	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	50.2037172243301	100	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACTTGGCTGTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	47814449	47778353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47813988_47814069_47814388
18929	chr6	+	2619	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-26	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	279.043286168214	1	72	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTTGCTGTTGTGTTTTT	5411	False	NA	NA	False	NA	NA	NA	125108845	125121713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110764_125111509_125111695_125113875_125113932_125114017_125114182_125114275_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
18932	chr3	+	3109	10	NIC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	5	-5	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	66.6374009838059	8	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTTTGTATGCCTTCA	NA	False	NA	NA	False	NA	NA	NA	116306781	116343625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_116306841_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
18933	chr5	+	4317	3	Intergenic	novelGene_804	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_2	7.5	1	101	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTAATTTAAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	110014578	110033718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110014679_110027935_110028063_110029628
18934	chr11	+	2279	13	NIC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	16	-2	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	173.891309443572	1964	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	4350	False	NA	NA	False	NA	NA	NA	102321359	102327631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102321529_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
18935	chr12	+	3581	6	ISM	ENSMUSG00000021282.18	ENSMUST00000222375.2	3547	12	2731	-1	-1278	1	3prime_fragment	FALSE	canonical	3	2160	junction_2	98.9234047129394	606	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCTGTCTGCTTTAATA	NA	False	NA	NA	False	NA	NA	NA	111507380	111513023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
18936	chr6	-	3024	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	16	6	16	-6	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	730	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGTCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39397380	39374743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
18938	chr13	-	1559	10	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	866	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	2841.66117735975	1	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTATTTTTGGTGGTCTT	6868	False	NA	NA	False	NA	NA	NA	58548213	58539769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58548146
18939	chr17	+	4467	3	Antisense	novelGene_ENSMUSG00000094441.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACGGTCAACAAGGTCGAT	NA	False	NA	NA	False	NA	NA	NA	33457923	33474037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_33461925_33462686_33463108_33473992
18940	chr4	-	1653	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41092952_41093060_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
18942	chr2	+	2318	11	NIC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	22	0	intron_retention	FALSE	canonical	3	1724	junction_1	118.825460234749	32	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	90884375	90889777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90888207_90888354_90888501_90889390_90889473_90889598
18943	chr9	-	2090	12	NNC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1156	5101	intron_retention	FALSE	non_canonical	0	0	junction_1	0	291	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTATTCCGTCACACGTT	10016	False	NA	NA	False	NA	NA	NA	108442760	108437634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108437825_108438226_108438281_108438794_108439578_108439988_108440078_108440333_108440540_108440622_108440709_108440789_108440889_108441831_108441975_108442061_108442208_108442298_108442443_108442523_108442614_108442700
18944	chr12	+	2949	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	26	-4	26	4	multi-exon	FALSE	canonical	3	167	junction_1	9.17877987534291	537	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	30634450	30641218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
18945	chr10	+	707	1	Intergenic	novelGene_3433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGGATACACTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	43252986	43253693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_43253000_43253700
18946	chrX	+	1641	11	ISM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	1173	297	509	39	3prime_fragment	FALSE	canonical	3	2711	junction_2	181.912176612782	3	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161544570	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
18947	chr8	-	3083	2	Antisense	novelGene_ENSMUSG00000091490.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCTACAAGTCAACAGAA	NA	False	NA	NA	False	NA	NA	NA	43639348	43635928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_43636405_43636741
18948	chr2	+	2502	16	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	18	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	607.311803496908	1	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157120954	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159989_157163628_157163793_157167630
18949	chr15	-	2613	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	31	1361	31	343	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	1	87	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGACCTCTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	11399720	11383747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
18950	chr4	-	2753	9	NIC	ENSMUSG00000028896.14	novel	2285	10	NA	NA	1	-3	intron_retention	FALSE	canonical	3	372	junction_8	37.1127926057849	6	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCTTTGTTTTTATG	5482	False	NA	NA	False	NA	NA	NA	132073015	132059236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
18951	chr11	+	3626	4	NNC	ENSMUSG00000007850.17	novel	4002	12	NA	NA	-1	-3	intron_retention	FALSE	non_canonical	0	0	junction_3	95.7264621489563	2	64	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACACTCTGTCTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	50268594	50277351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268630_50269117_50269255_50270294_50273076_50276678
18953	chr4	-	3024	24	NNC	ENSMUSG00000028559.18	novel	2871	24	NA	NA	61	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	125.195665385747	2	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAATATGTTTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	109059353	108918853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929497_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
18954	chr8	+	3612	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	15	12	15	-12	multi-exon	FALSE	canonical	0	0	junction_1	271.645643020279	281	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGTGGTGACTGAGCAG	NA	False	NA	NA	False	NA	NA	NA	86219219	86254177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
18955	chr19	-	1717	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.93458700951	7	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902356	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15882791_15883171_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
18956	chr12	+	2470	12	NNC	ENSMUSG00000020572.9	novel	4527	11	NA	NA	-225	-1743	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	274.055010463831	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGACATCATTTATTAAT	NA	False	NA	NA	False	NA	NA	NA	32870574	32901605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_32870626_32880165_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421_32901367_32901439
18958	chr11	-	2912	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	3	0	3	0	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	388	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	5010	False	NA	NA	False	NA	NA	NA	63970289	63853452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
18959	SIRV7	-	2177	6	NNC	SIRV7A	novel	2247	6	NA	NA	62	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1412.33715521472	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGTAATTAGTGTTAATAT	NA	False	NA	NA	False	NA	NA	NA	114854	1008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3115_4098_4180_4725_4811_43028_43078_114680
18960	chr7	-	2644	11	NIC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	51	430	combination_of_known_splicesites	FALSE	canonical	1	2	junction_10	273.218319297956	9	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAATAATGGCTATCAG	NA	False	NA	NA	False	NA	NA	NA	132725448	132588861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132725386
18961	chr5	+	2057	1	FSM	ENSMUSG00000029110.14	ENSMUST00000183265.2	4514	1	265	2192	265	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTCATTTATTCAGTT	NA	False	NA	NA	False	NA	NA	NA	34508724	34510781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_34508700_34510800
18962	chr10	-	2886	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	12	-5	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	71.1213751273132	15	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGACTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	115198386	115176651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115198291
18963	chr15	+	1822	12	ISM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	593	5	514	-5	3prime_fragment	FALSE	canonical	3	1651	junction_3	134.955456379546	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	19	False	NA	NA	False	NA	NA	NA	78959971	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
18965	chr2	+	3586	18	NNC	ENSMUSG00000026827.13	novel	5759	18	NA	NA	98	780	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	65.6026098729717	4	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAATAAAATAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	57128491	57258645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_57128580_57145050_57145201_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
18966	chr4	+	2925	12	NNC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-14	-11	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	209.238801451972	6	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAATTGAGTTAA	9558	False	NA	NA	False	NA	NA	NA	155648142	155675443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155648211_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
18967	chr13	+	3606	12	FSM	ENSMUSG00000001542.8	ENSMUST00000001583.8	4382	12	768	8	-60	-8	multi-exon	FALSE	canonical	3	343	junction_2	37.9194448472108	252	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAGTGAATAATTTT	6220	False	NA	NA	False	NA	NA	NA	75855643	75920475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
18970	chr5	-	3327	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	9	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	1	131	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACAGATCTGATGTCGGC	NA	False	NA	NA	False	NA	NA	NA	135963395	135937275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938451_135938572_135940506_135963176
18975	chr1	-	3738	7	NIC	ENSMUSG00000042305.13	novel	3149	8	NA	NA	47	371	intron_retention	FALSE	canonical	0	0	junction_1	224.979258303219	2	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATTTTAAGGTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	134289632	134275048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
18976	chr11	+	1900	12	Antisense	novelGene_ENSMUSG00000018362.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	24	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGCTGCCGGCCGGCGCG	NA	False	NA	NA	False	NA	NA	NA	106879461	106890290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106879805_106880148_106880297_106881007_106881192_106881469_106881699_106881894_106882159_106882238_106882331_106882680_106882775_106882836_106882952_106883427_106883513_106887330_106887472_106888062_106888162_106890184
18977	chr11	+	2660	8	NIC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	2502	junction_1	170.443718641931	46	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGACTCTGCGGTAG	NA	False	NA	NA	False	NA	NA	NA	9068545	9086169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9083349_9084721_9084932_9085163_9085311_9085960
18978	chr1	-	2638	8	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-833	28	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_7	143.424871893096	8	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCTGGTTCCTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	13198220	13183652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13198120
18979	chr11	+	3474	21	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	240	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	64.7376242999386	1	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCTTCCAGTCCACTGA	3118	False	NA	NA	False	NA	NA	NA	78192720	78213278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204463_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206334_78206469_78206725_78206868_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
18980	chr10	-	2563	10	NIC	ENSMUSG00000019814.6	novel	2297	11	NA	NA	26	-463	intron_retention	FALSE	canonical	3	645	junction_6	44.5606813344192	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAACGGAATTGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	13068886	13054346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
18981	chr1	-	3128	6	NIC	ENSMUSG00000003051.14	novel	2095	9	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	306	junction_4	130.335566903282	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	135186200	135181316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135182119_135182662_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
18982	chr6	-	2371	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-19	-29	intron_retention	FALSE	non_canonical	0	0	junction_1	279.574416151884	12	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGCTGCCTCGTCATCT	9153	False	NA	NA	False	NA	NA	NA	88495829	88480589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88481068_88481781_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
18983	chr11	-	2190	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	32	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	1569.52799875915	1	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAATAAAAGATATTTGAA	9713	False	NA	NA	False	NA	NA	NA	106679261	106672398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677387_106677810_106677901_106679092
18984	chr11	+	1859	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	6	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3037	False	NA	NA	False	NA	NA	NA	75623740	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655997_75656187
18985	chr15	+	1362	11	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	185	5245	10	-275	5prime_fragment	FALSE	canonical	3	1727	junction_10	116.36670486011	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTTGCATCGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	81756694	81794089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042
18986	chr11	+	2229	11	NIC	ENSMUSG00000025156.18	novel	1617	15	NA	NA	0	-18	intron_retention	FALSE	canonical	3	682	junction_1	172.650543005228	18	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGTACAAGTTGATCAT	1394	False	NA	NA	False	NA	NA	NA	120675100	120679905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678808_120678887_120678969_120679069_120679423_120679495
18987	chr15	-	1604	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	12	0	-12	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	5	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAAAGAGTTTTGTTTC	158	False	NA	NA	False	NA	NA	NA	98832319	98829317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
18988	chr1	+	2516	8	ISM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	214	4	0	-4	intron_retention	FALSE	canonical	3	35	junction_5	138.679192265267	125	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGAATCATTGTCGTCG	8185	False	NA	NA	False	NA	NA	NA	134333732	134339470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230
18989	chr11	-	2208	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	48	0	9	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	2197	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6404	False	NA	NA	False	NA	NA	NA	102076074	102053322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
18990	chr4	+	1141	9	NNC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	2	-134	intron_retention	TRUE	canonical	0	0	junction_7	179.948213036418	2	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCGCGAGGCCACCTGGC	3978	False	NA	NA	False	NA	NA	NA	155709341	155724146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155723340_155723449_155724056
18991	chr7	-	2885	9	Antisense	novelGene_ENSMUSG00000109268.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	483	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACCAGCAGAAGCGCAAAG	NA	False	NA	NA	False	NA	NA	NA	92583751	92524502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_92524707_92550364_92550507_92554317_92554419_92559340_92559524_92566875_92567032_92568206_92568378_92576885_92577046_92577804_92577998_92582176
18992	chr9	-	3454	10	Antisense	novelGene_ENSMUSG00000032216.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	128	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTATCCCTGGAAAGACAA	6197	False	NA	NA	False	NA	NA	NA	72657118	72643956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72644070_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647500_72648904_72648964_72649932_72650036_72650816_72650917_72653686_72653759_72654405
18993	chr15	-	1201	3	ISM	ENSMUSG00000062397.9	ENSMUST00000226453.2	517	4	2531	-169	-426	-2	3prime_fragment	FALSE	canonical	3	6501	junction_2	120	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAACACCGCAGGATAAAT	3073	False	NA	NA	False	NA	NA	NA	37004728	37000873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_37001168_37002082_37002191_37003929
18994	chr7	-	2121	15	NNC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	307.72967198567	17	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102802	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143088083_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
18995	chr9	+	2235	18	FSM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	-223	0	-11	0	multi-exon	TRUE	canonical	3	461	junction_11	125.012497645132	1134	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21914090	21925518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
18996	chr10	+	2464	13	NNC	ENSMUSG00000019970.16	novel	2602	12	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	314.939235761793	2	77	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21854579	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558_21875213_21875346
18997	chr7	-	1970	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	6	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1030.09875133407	2715	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAAACTTGCTTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	16121725	16060981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16061942_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
18998	chr9	+	3162	5	Antisense	novelGene_ENSMUSG00000042688.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGGCCTCGCAGAGGCA	NA	False	NA	NA	False	NA	NA	NA	75294067	75317305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_75296428_75297446_75297651_75300646_75300810_75305761_75306039_75317147
19000	chr2	-	3142	27	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	46	-1649	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.3167298214941	52	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAATGAGAATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	62242157	62162065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62162858_62162922_62163064_62164593_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
19001	chr11	+	2028	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-2	182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1435.12510639523	6	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940516	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947613_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
19002	chrUn_JH584304v1	-	2689	8	Intergenic	novelGene_4676	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	95	junction_1	330.568341756177	2	69	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAACAAAACAAAAACTAC	NA	False	NA	NA	False	NA	NA	NA	59707	52684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53833_54318_54480_54720_54868_55111_55702_56985_57152_57410_57500_58563_58836_59591
19003	chr7	-	1258	5	NIC	ENSMUSG00000030695.17	novel	1352	6	NA	NA	18	149	intron_retention	FALSE	canonical	3	19878	junction_4	263.867864659568	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAATGCTATCAACAAGTG	NA	False	NA	NA	False	NA	NA	NA	126396905	126394934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126395297_126395388_126395928_126396025_126396081_126396508_126396721_126396815
19004	chr18	+	2237	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	52	21	52	-21	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	3352	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTCCACTCACAAGACTG	6668	False	NA	NA	False	NA	NA	NA	36926980	36932698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
19005	chr18	+	2125	10	FSM	ENSMUSG00000034391.13	ENSMUST00000224467.3	1910	10	-215	0	-215	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	3050	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	585	False	NA	NA	False	NA	NA	NA	84952691	84999598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
19006	chrUn_JH584304v1	-	2268	5	Intergenic	novelGene_4694	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	350.245984987694	1	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCAGGGGTGTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	59028	53392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55249_55464_55702_58563_58965_59010
19007	chr2	-	3877	7	NIC	ENSMUSG00000026878.18	novel	3081	8	NA	NA	-1	-6	intron_retention	FALSE	canonical	3	890	junction_1	84.5576726264388	5	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAACATAGTTGCATTAT	9695	False	NA	NA	False	NA	NA	NA	35090989	35070222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
19008	chr11	+	2656	9	NIC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	614	-1	intron_retention	FALSE	canonical	3	883	junction_8	123.878973195615	1	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCCAAGGCTCCTTT	2248	False	NA	NA	False	NA	NA	NA	120675954	120679922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120676708_120677127_120677293_120677377_120677676_120677834_120677896_120678205_120678618_120678701_120678808_120678887_120678969_120679069_120679423_120679495
19009	chr14	-	2350	8	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-111	-111	intron_retention	FALSE	canonical	3	2964	junction_2	199.636608642313	7	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	63746316	63729906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63734465_63735046_63735090_63737569_63737770_63746158
19010	chr6	-	2680	1	FSM	ENSMUSG00000055850.13	ENSMUST00000206319.2	2410	1	-270	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	NA	NA	NA	72339376	72336696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72336700_72339400
19011	chr2	+	2328	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113755.8	2305	17	-23	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	168.994082736645	503	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7203	False	NA	NA	False	NA	NA	NA	29779806	29812551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
19013	chr2	-	3804	5	NNC	ENSMUSG00000027109.17	novel	3870	5	NA	NA	-14	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	185.290818714798	356	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGCTTGAAAAAGTCTAA	2871	False	NA	NA	False	NA	NA	NA	72810804	72766773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72810703
19015	chr2	-	4372	23	NIC	ENSMUSG00000036281.14	novel	4363	23	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	13.1962303658192	80	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCAATGTATAGCCTT	NA	False	NA	NA	False	NA	NA	NA	26270650	26252785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26253033_26253649_26253805_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
19017	chr8	+	4481	31	NIC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	4	-8	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	24.2166379903478	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCATCAGAAGCAATGTC	NA	False	NA	NA	False	NA	NA	NA	86567648	86787262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86567733_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
19018	chr4	-	1671	14	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	530.006765614962	68	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	8830	False	NA	NA	False	NA	NA	NA	129436484	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410095_129410697_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
19019	chr4	-	3846	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	5	5	5	-5	multi-exon	FALSE	canonical	3	214	junction_1	19	228	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAATTTTCTGTGCAACAT	-32	True	NA	NA	False	NA	NA	NA	40269845	40259605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40263082_40268303_40268502_40269673
19020	chr2	+	2698	13	NNC	ENSMUSG00000040282.14	novel	2735	11	NA	NA	-6	-171	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_11	141.85614779299	30	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACCAGTTTGGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	115412207	115609078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_115412467_115434047_115434112_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115579557_115579622_115607382
19021	chr19	+	3922	9	NIC	ENSMUSG00000034820.5	novel	3315	11	NA	NA	547	75	intron_retention	FALSE	canonical	3	29	junction_3	99.0072598348222	1	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACGGATTCTGCATTGAAT	NA	False	NA	NA	False	NA	NA	NA	10503314	10525092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10503425_10509144_10509364_10509494_10509561_10510183_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
19022	chr2	-	2521	8	NIC	ENSMUSG00000027496.16	novel	1862	9	NA	NA	0	-5	intron_retention	FALSE	canonical	3	1025	junction_7	145.890789459032	16	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACCTGGAGTACGTGGG	NA	False	NA	NA	False	NA	NA	NA	172212441	172198120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
19024	chr17	-	2270	17	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	626.847466369411	1	35	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5769	False	NA	NA	False	NA	NA	NA	33904364	33865212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865420_33865490_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
19025	chr8	+	2876	5	NNC	ENSMUSG00000059897.6	novel	3001	4	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	40.4722126896961	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	7243	False	NA	NA	False	NA	NA	NA	69661732	69683188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494_69681076_69681157
19026	chr5	+	2963	8	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-19	-6	intron_retention	FALSE	canonical	0	0	junction_7	648.642853209999	2	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	8056	False	NA	NA	False	NA	NA	NA	145051048	145064877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145061505_145062387_145062595_145062700_145062777_145063536_145063984_145064061
19027	chr11	-	464	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	12	1045	12	-14	multi-exon	FALSE	canonical	3	5710	junction_1	0	12968	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGGACTTCCCTTTGT	2959	False	NA	NA	False	NA	NA	NA	53321642	53319793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53319978_53321362
19028	chr13	-	2493	5	NNC	ENSMUSG00000074863.6	novel	2458	4	NA	NA	25	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	66.5920415665416	2	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCTGGTTCCTGGGAAA	NA	False	NA	NA	False	NA	NA	NA	62832707	62819601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62821755_62823062_62823124_62823332_62823460_62824602_62824694_62832646
19029	chrX	+	2000	9	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-519	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	259.354848614789	3	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCCTGGCTCTTTAGGT	7585	False	NA	NA	False	NA	NA	NA	73350240	73355464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354060_73354418
19030	chr5	+	3374	9	NNC	ENSMUSG00000029486.14	novel	3431	9	NA	NA	-11	5	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_3	234.515957612696	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTTATTCTATTATATG	NA	False	NA	NA	False	NA	NA	NA	96357991	96414573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_96358053_96361645_96361770_96371629_96371848_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
19031	chr15	-	3161	16	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-6	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	8.938307073117	1	90	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6988	False	NA	NA	False	NA	NA	NA	98560781	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549959_98550763_98550863_98554482_98554594_98556110_98556317_98560703
19032	chr13	+	4313	21	FSM	ENSMUSG00000038080.18	ENSMUST00000037025.16	4987	21	-8	682	-8	1	multi-exon	FALSE	canonical	3	35	junction_2	9.84682690007294	97	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGTCAACCTCCTTT	1153	False	NA	NA	False	NA	NA	NA	47196966	47238073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_47197147_47201378_47201479_47202653_47202782_47204085_47204176_47205264_47205377_47207094_47207212_47212251_47212291_47214228_47214458_47216433_47216619_47217529_47217707_47218046_47218122_47220920_47221059_47221939_47222112_47225367_47225496_47227186_47227319_47227829_47227905_47230858_47230976_47231743_47231870_47232658_47232776_47233911_47234065_47236350
19033	chr2	+	1775	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	52	-708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1153.94591149961	63	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGTCGTTTTTTTCCCC	NA	False	NA	NA	False	NA	NA	NA	121244415	121268460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266872_121268169
19034	chr5	-	2994	18	Antisense	novelGene_ENSMUSG00000036323.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGTGGGGGAGGGGGGT	NA	False	NA	NA	False	NA	NA	NA	77147435	77122554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77122680_77124244_77124366_77126429_77126558_77128140_77128279_77128361_77128472_77130079_77130114_77131964_77132088_77132178_77132237_77135711_77135844_77137145_77137275_77138117_77138191_77139834_77139901_77141987_77142083_77142472_77142579_77142682_77142761_77143624_77143762_77144497_77144558_77146154
19035	chr9	-	2260	5	ISM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	15	4439	-1	1763	5prime_fragment	FALSE	canonical	3	115	junction_4	13.2735639524583	6	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATTGCTGTTATATGCG	NA	False	NA	NA	False	NA	NA	NA	57347375	57325682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
19038	chr6	+	2600	7	NNC	ENSMUSG00000053119.12	novel	998	7	NA	NA	44	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	176.505665631447	8	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTGTATATTATGCCT	NA	False	NA	NA	False	NA	NA	NA	71520956	71558560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71521018_71523470_71523596_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
19039	chr1	+	1980	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	724.806315891049	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724146	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748300_59749781_59749812_59750429
19040	chr10	-	2420	4	FSM	ENSMUSG00000004667.19	ENSMUST00000143438.8	2403	4	-27	10	-27	-8	multi-exon	FALSE	canonical	3	2552	junction_2	187.276978474843	105	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAAGTTACTGTGGTGCA	5573	False	NA	NA	False	NA	NA	NA	79875571	79871792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79874448_79875416
19041	chr15	-	1609	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	132	2	5	-2	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	14	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	163	False	NA	NA	False	NA	NA	NA	98832314	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
19043	chr5	-	2557	13	NIC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	95	2	intron_retention	FALSE	canonical	3	1197	junction_12	126.067993118352	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGGGTCTCTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	24782370	24770340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
19046	chr4	-	3526	4	FSM	ENSMUSG00000028389.13	ENSMUST00000222748.2	2564	4	-39	-923	-39	-5	multi-exon	FALSE	canonical	2	4	junction_3	15.556349186104	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTGAAAGTGGTATTT	NA	False	NA	NA	False	NA	NA	NA	62126478	62107781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126314
19047	chr15	-	1484	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	5	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4701.41214822738	27	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAAAGAGTTTTGTTT	163	False	NA	NA	False	NA	NA	NA	98832314	98829318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829852_98829965_98830444_98830572_98830722_98830853_98831077_98832213
19048	chr4	-	2150	7	NNC	ENSMUSG00000028568.17	novel	624	7	NA	NA	8	-930	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	416.198970846077	3469	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGAGATATTTCCTCTA	NA	False	NA	NA	False	NA	NA	NA	108690803	108672421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108673401_108673453_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
19049	chr4	-	2963	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	-34	-1915	30	-18	multi-exon	FALSE	canonical	3	7869	junction_1	0	242	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATCACCAGGAAACTTGCC	9271	False	NA	NA	False	NA	NA	NA	132260940	132257883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132260699_132260792
19050	chr12	-	2704	11	NNC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	1	-202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	68.426310729134	482	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGATTTCTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	32000208	31976454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000104
19051	chr15	-	1547	3	ISM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	2015	0	2015	0	3prime_fragment	FALSE	canonical	3	2174	junction_2	1417	558	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	NA	False	NA	NA	NA	98849569	98847717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98848896_98849068_98849218_98849349
19052	chr15	+	1494	3	Antisense	novelGene_ENSMUSG00000116358.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGTAGGGAAGGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	98829325	98831077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98830446_98830575_98830721_98830848
19053	chr16	-	3493	23	FSM	ENSMUSG00000022680.15	ENSMUST00000115804.9	2880	23	-40	-573	-6	-9	multi-exon	TRUE	canonical	3	10	junction_1	45.2457020469238	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACTGGCAAAACAAATGT	9764	False	NA	NA	False	NA	NA	NA	13720925	13651450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_13652711_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
19054	chr8	+	1929	12	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-2020	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	418.167944433891	2	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	481	False	NA	NA	False	NA	NA	NA	120668796	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321_120683639_120683785
19056	chr14	-	3359	11	NIC	ENSMUSG00000022052.10	novel	2192	11	NA	NA	103	8	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	281.93305943078	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGTATTTAAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	67309781	67252114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67275386_67275458_67276323_67276422_67307683_67307759_67309538
19057	chr15	+	1830	7	NIC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	5	-891	intron_retention	FALSE	canonical	3	1189	junction_5	85.408820777872	652	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCAGTCTGCTTTATTC	637	False	NA	NA	False	NA	NA	NA	78915078	78921662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920303_78920466_78920639_78920952
19058	chr7	-	3218	26	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	428.156046319563	1	88	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198246	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183338_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188201_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191684_44192732_44192861_44198178
19059	chr11	+	1089	1	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTCGCCCTGCCCGTCTC	1123	False	NA	NA	False	NA	NA	NA	120468936	120470025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120468900_120470000
19061	chr2	-	2421	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	34	-7	34	7	multi-exon	TRUE	canonical	3	221	junction_3	37.3630833845388	683	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCTAAGAGTATTTCTG	NA	False	NA	NA	False	NA	NA	NA	5900209	5875790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
19062	chr3	+	3938	6	NIC	ENSMUSG00000000561.15	novel	911	8	NA	NA	-39	-238	intron_retention	FALSE	canonical	3	910	junction_2	60.6893730400966	1	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACCCTGGACCTGACAG	NA	False	NA	NA	False	NA	NA	NA	105866784	105874605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105873742_105874478
19063	chr15	+	4551	20	NNC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	19	-249	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	139.4086243492	1	202	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAATTCATGTAATGACT	94	False	NA	NA	False	NA	NA	NA	12117970	12185520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150555_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
19064	chr10	-	1864	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	79	16	24	-11	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTTACTTAGCCCTTAA	NA	False	NA	NA	False	NA	NA	NA	116899640	116886921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
19065	chr19	+	1641	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	109	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_1	2635.2566394102	226	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACTGTTTGTCTTGTGT	4322	False	NA	NA	False	NA	NA	NA	41900623	41907099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900754_41904043_41904319_41905081_41905263_41906044
19066	chrX	+	4139	7	NIC	ENSMUSG00000025860.16	novel	6542	8	NA	NA	11	-1404	combination_of_known_splicesites	FALSE	canonical	3	10	junction_2	42.5535610208541	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCAAAGCTCATGGTCAG	NA	False	NA	NA	False	NA	NA	NA	41156805	41197129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_41156934_41157233_41157360_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
19067	chr10	+	2582	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	30	32	intron_retention	FALSE	non_canonical	0	0	junction_1	603.971508709917	1	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCCAGGCTGGGCCTGGA	1654	False	NA	NA	False	NA	NA	NA	79690531	79700225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79694553_79694637_79694980_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
19069	chr11	-	3079	22	ISM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	10801	6	176	-6	3prime_fragment	FALSE	canonical	3	102	junction_19	26.104708048797	5	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	NA	False	NA	NA	NA	98609460	98595422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322
19070	chr3	+	4856	30	NNC	ENSMUSG00000037400.18	novel	4868	30	NA	NA	-7	-124	intron_retention	FALSE	canonical	0	0	junction_12	117.255070194537	1	92	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAATATTGCAAATATAT	NA	False	NA	NA	False	NA	NA	NA	35808247	35910296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861193_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868379_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35903582_35903714_35909253
19071	chr10	+	2201	19	Antisense	novelGene_ENSMUSG00000052798.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	36	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGACAGAGACGGGAAGG	NA	False	NA	NA	False	NA	NA	NA	117586527	117613569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117586879_117587227_117587390_117593166_117593286_117593800_117593934_117595079_117595238_117597149_117597260_117597932_117598041_117599635_117599789_117600221_117600267_117601867_117601933_117602236_117602308_117606094_117606142_117606280_117606444_117608967_117609035_117609175_117609271_117610359_117610477_117612118_117612194_117613032_117613123_117613497
19072	chr16	+	3579	18	NIC	ENSMUSG00000005899.15	novel	4532	19	NA	NA	0	137	intron_retention	FALSE	canonical	3	228	junction_12	24.0435015211579	35	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTTGCTTCGGAGATTG	NA	False	NA	NA	False	NA	NA	NA	17437240	17461348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
19073	chr19	-	2568	8	NIC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	55	-1988	combination_of_known_splicesites	FALSE	canonical	3	8	junction_5	140.673743253019	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTCAGAAAAATCCATTG	NA	False	NA	NA	False	NA	NA	NA	43741384	43723680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43737228_43737352_43739782_43739974_43741260
19075	chr10	-	3458	4	Antisense	novelGene_ENSMUSG00000112160.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	63	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGGCGGACAGGAAGTGC	NA	False	NA	NA	False	NA	NA	NA	81947752	81919155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81919251_81943648_81943768_81943969_81944032_81944570
19076	chr14	+	1327	7	NIC	ENSMUSG00000021771.15	novel	893	9	NA	NA	6	374	intron_retention	FALSE	canonical	3	2055	junction_4	120.837930947015	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCCGCCATGATGGTC	NA	False	NA	NA	False	NA	NA	NA	21881639	21891011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21888112_21888458_21888687_21890486
19077	chr5	+	2935	11	NNC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	95	-234	intron_retention	FALSE	non_canonical	0	0	junction_2	31.2857795172184	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTATATGGCCCCAAGTT	8238	False	NA	NA	False	NA	NA	NA	138170424	138178457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138170511_138170610_138170700_138171023_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174471_138174526_138175417_138175463_138176184_138176443_138176538
19078	chrX	+	3618	6	ISM	ENSMUSG00000025246.14	ENSMUST00000133893.2	3611	13	138576	-2417	138576	-823	3prime_fragment	FALSE	canonical	3	437	junction_5	37.6319013604149	4	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGCAGCCCACACCCCTG	NA	False	NA	NA	False	NA	NA	NA	76693395	76705766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
19079	chrX	-	1688	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGTGTGGTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	135642027	135633695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634720_135634822_135635251_135636294_135636372_135640553_135640644_135641958
19081	chr8	-	4331	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	-28	25	-17	-25	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	407	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATAAAATTGTCCTGGA	NA	False	NA	NA	False	NA	NA	NA	66939199	66925794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
19082	chr15	+	1326	10	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	175	5485	0	-515	5prime_fragment	FALSE	canonical	3	1775	junction_1	104.608381978917	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTTCACGTGCCCCTG	NA	False	NA	NA	False	NA	NA	NA	81756684	81793849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690
19083	chr14	+	2944	12	NNC	ENSMUSG00000021981.11	novel	3037	11	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	95.8193030812435	544	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTTGGTCTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	59678437	59786350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434_59785105_59785187
19084	chr3	+	2865	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	-40	2	-40	1	multi-exon	FALSE	canonical	3	130	junction_1	26.9118359384908	453	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCGTTCCTACCTTGG	NA	False	NA	NA	False	NA	NA	NA	95190214	95203475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
19085	chr3	+	3675	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_8	25.1755554804656	236	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	NA	False	NA	NA	False	NA	NA	NA	135191371	135277165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
19086	chr17	+	3361	26	NIC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	0	64	combination_of_known_splicesites	FALSE	canonical	1	6	junction_22	36.9756676748372	12	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTCCGTGTTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	66430565	66458448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456962_66457048_66457325_66457405_66457568_66457724_66457797
19087	chr16	+	2935	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	63	5	-29	-5	multi-exon	FALSE	canonical	3	82	junction_1	10.7760126660835	219	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAACCTTTATAGAGAAAT	NA	False	NA	NA	False	NA	NA	NA	13489784	13521471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
19088	chr5	+	3131	10	NNC	ENSMUSG00000041264.17	novel	3148	10	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	137.679534866253	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTTGGTTTCATTTTG	NA	False	NA	NA	False	NA	NA	NA	149121488	149152242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131244_149135452_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
19089	chr10	-	2631	16	NNC	ENSMUSG00000020076.8	novel	2535	15	NA	NA	10	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	92.0064248964289	5	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTCTGTTTTTATTCTGT	8131	False	NA	NA	False	NA	NA	NA	62486972	62451807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62468858_62468994_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
19090	chr17	+	2298	12	ISM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	109	3483	-67	491	5prime_fragment	FALSE	canonical	3	1213	junction_1	70.2818411119305	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATGCTTCTAGACCCAT	NA	False	NA	NA	False	NA	NA	NA	21165681	21182695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846
19091	chr8	-	3192	12	NIC	ENSMUSG00000031557.17	novel	5176	12	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	2	6	junction_11	41.1584320513503	11	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACTTTTG	8177	False	NA	NA	False	NA	NA	NA	25581360	25530862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25581298
19092	chr3	+	2476	11	FSM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	-118	6	-118	-6	multi-exon	FALSE	canonical	3	238	junction_8	29.6317397396778	671	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAATAGTGTGCAAGGAA	NA	False	NA	NA	False	NA	NA	NA	55089330	55117372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013_55115271_55116307
19093	chr16	+	3384	9	NNC	ENSMUSG00000002845.15	novel	835	3	NA	NA	-2901	-4	intron_retention	FALSE	canonical	1	19	junction_1	313.371160726382	6	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGATGTTATCTTTCAT	4169	False	NA	NA	False	NA	NA	NA	38376158	38411664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38376219_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38405980_38406043_38406582_38408666_38411273
19094	chr6	-	2450	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	86	20	86	-20	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	2	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGGTCAGGTTGGGAG	8571	False	NA	NA	False	NA	NA	NA	145021824	144944903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
19095	chr3	-	2280	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	-2	combination_of_known_splicesites	FALSE	canonical	1	21	junction_13	152.583161239208	7	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGCTGTGCCTTCATCT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658817_95658943_95660318_95660443_95661630_95661828_95662069
19096	chr1	+	2307	15	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-3	-252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	489.884852151347	79	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3139	False	NA	NA	False	NA	NA	NA	180396485	180428565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180428441
19098	chr6	+	1713	7	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	934.400996479682	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	51447593	51460684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459_51459570_51459661
19099	SIRV12001	+	5410	1	FSM	SIRV12001A	SIRV12001	12029	1	6619	0	6619	0	mono-exon	FALSE	NA	NA	NA	NA	NA	251	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	6619	12029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV12001_+_6600_12000
19100	chr8	+	3549	11	NIC	ENSMUSG00000031684.12	novel	3595	12	NA	NA	2	-4	intron_retention	FALSE	canonical	0	0	junction_4	40.3669419203387	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACGAATCTCTGGAAATGT	NA	False	NA	NA	False	NA	NA	NA	79235998	79460627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
19101	chr19	-	2607	19	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	0	-378	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	740.936494504684	1	86	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGGATGAATACAGGCGC	3918	False	NA	NA	False	NA	NA	NA	5345431	5324337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337567_5337655_5337937_5338035_5338331_5338442_5341332_5341447_5343107_5343297_5345289
19102	chr5	-	1767	10	NIC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-40	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	695.264777700633	14	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTAATAACTCTGTAGA	2280	False	NA	NA	False	NA	NA	NA	138170120	138162856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
19103	chr14	-	2657	15	NNC	ENSMUSG00000022031.7	novel	2771	15	NA	NA	2444	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.285313451349	1	72	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	5913	False	NA	NA	False	NA	NA	NA	65828055	65767897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65768634_65768677_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954
19104	chr8	+	2852	25	NNC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	187.906503790227	1	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTATTACCTGTTGCAA	NA	False	NA	NA	False	NA	NA	NA	108163016	108283838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278910_108278976_108279026_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
19105	chr11	+	3333	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	29	-3	29	3	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	2	137	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATCAGTTTTTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	109541775	109560485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
19106	chr7	+	3182	10	ISM	ENSMUSG00000100254.2_ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	3886	-678	3886	-3	3prime_fragment	FALSE	canonical	3	84	junction_8	10.785220797662	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTATGTGTTGCCGATCT	NA	False	NA	NA	False	NA	NA	NA	101718850	101732966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
19107	chr6	+	2696	10	Antisense	novelGene_ENSMUSG00000029782.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTAAGACTGAAGAGCGA	NA	False	NA	NA	False	NA	NA	NA	30486161	30506882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_30487447_30489290_30489590_30491085_30491186_30492597_30492724_30494738_30494834_30497165_30497240_30497818_30497992_30501898_30502102_30505731_30505978_30506787
19108	chr4	+	2810	21	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	77	193	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	230.463983086295	24	62	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTATAACATTTGTATATG	NA	False	NA	NA	False	NA	NA	NA	148642995	148661263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148647931_148647961_148648043_148648154_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652820_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606
19109	chr15	+	1938	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	34	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	493.395963085318	4729	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959412	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78960995_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
19110	chrX	-	5138	15	NNC	ENSMUSG00000040363.16	novel	6839	15	NA	NA	676	-1026	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	50.251053395396	1	136	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCAAAGACCTGGAAGCC	NA	False	NA	NA	False	NA	NA	NA	11946116	11904007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946052
19111	chr2	-	4127	14	NNC	ENSMUSG00000027104.19	novel	2396	14	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	131.44229503123	1	150	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGTTTATAATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	73722894	73646865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660284_73672703_73672791_73675782_73675898_73676540_73676720_73680934_73681062_73681207_73681327_73684138_73684232_73693512_73693583_73704013_73704090_73710628_73710726_73722818
19113	chr17	+	3689	25	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	-18	-7	combination_of_known_junctions	FALSE	canonical	3	186	junction_11	154.706302168191	298	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCGGATTTTCCTGGCTC	8778	False	NA	NA	False	NA	NA	NA	35354443	35366265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35354605_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
19114	chr8	-	4064	28	NIC	ENSMUSG00000038102.16	novel	4332	30	NA	NA	20	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_21	32.3854105241051	3	78	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACATCTGTCGTAAATAC	4074	False	NA	NA	False	NA	NA	NA	47986482	47943166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
19115	chr9	+	2438	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	115.070012385819	1	63	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385255	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387542_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
19116	chrX	-	2317	9	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	0	-3	intron_retention	FALSE	canonical	3	210	junction_8	411.788401366527	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGCCCTGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	72830228	72822571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830133
19117	chr12	-	2578	10	NNC	ENSMUSG00000021266.17	novel	2764	10	NA	NA	-123	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	623.285520051744	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	NA	False	NA	NA	NA	108854466	108825955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826468_108826606_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301
19118	chr1	-	2096	16	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	40	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	506.478544022899	9	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGATAGTGTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	128345056	128291447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333201_128341426_128341490_128343090_128343149_128344888
19119	chr13	-	1951	10	Antisense	novelGene_ENSMUSG00000113894.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGGATACATTCCTAAAG	NA	False	NA	NA	False	NA	NA	NA	3615812	3598876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3598971_3600988_3601088_3604410_3604547_3606313_3606513_3606925_3607056_3609989_3610090_3611863_3612036_3614537_3614685_3614858_3614910_3614989
19121	chr1	-	1964	18	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	443.510656492204	3733	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACTCCTTGCGTAGCTG	NA	False	NA	NA	False	NA	NA	NA	78465493	78401726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78441647_78441724_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
19122	chrX	-	2664	11	NNC	ENSMUSG00000085396.8	novel	3850	12	NA	NA	-16567	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	38.8099214119276	21	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTCTGAGTCATTTCG	NA	False	NA	NA	False	NA	NA	NA	49697403	49644631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49644807_49647107_49647262_49649685_49649884_49651556_49651832_49653689_49653845_49656416_49656571_49658153_49659189_49661282_49661458_49666747_49666902_49667720_49667861_49697354
19123	chr5	-	3372	14	Fusion	ENSMUSG00000029730.17_ENSMUSG00000036980.14	novel	2304	15	NA	NA	1050	-2605	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	54	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAATCTTTCAACGGCCCG	8760	False	NA	NA	False	NA	NA	NA	138178680	138170277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_138170509_138171043_138171153_138171225_138171330_138173010_138173122_138173204_138173285_138174171_138174237_138174313_138174378_138174469_138174524_138174871_138174979_138175076_138175173_138175416_138175461_138176182_138176233_138176327_138176441_138176536
19124	chr15	+	2802	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	-43	-1	-39	1	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	766	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTTTTGGTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	59186886	59203042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
19126	chr2	-	3980	9	NIC	ENSMUSG00000027361.16	novel	2751	10	NA	NA	-1216	-3	combination_of_known_junctions	FALSE	canonical	3	45	junction_8	125.7208589495	12	112	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATAGCTCCATGCAGACT	NA	False	NA	NA	False	NA	NA	NA	126506426	126470837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_126472303_126481148_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910
19127	chr12	-	1886	6	NNC	ENSMUSG00000076432.14	novel	2197	6	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_5	1379.1689381653	176	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	21467536	21440329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467455
19128	chr8	-	1752	3	NIC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-54	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	1469	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760071	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_43749574_43757512_43757597_43759877
19130	chr19	+	2156	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	-22	0	-22	0	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	1554	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	10872572	10882896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
19132	chr1	-	4001	8	NIC	ENSMUSG00000042305.13	novel	1689	9	NA	NA	-8	-11	intron_retention	FALSE	canonical	0	0	junction_2	298.896064114028	12	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTAATTGTTTTCTGGCTC	NA	False	NA	NA	False	NA	NA	NA	134289699	134273845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134283455_134288494_134288663_134289271_134289362_134289499
19134	chr8	-	2635	19	NIC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	-4	1	combination_of_known_junctions	FALSE	canonical	3	7	junction_14	106.734469191448	653	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGGTCTTGACCTCCT	1018	False	NA	NA	False	NA	NA	NA	3671309	3660088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666126_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
19135	chr17	-	2202	8	NNC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	750.743006110939	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCTGATATTCAGTCTT	NA	False	NA	NA	False	NA	NA	NA	80514732	80507511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511631_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
19136	chr9	-	4879	33	FSM	ENSMUSG00000034007.11	ENSMUST00000214747.2	5231	33	-18	370	0	-366	multi-exon	FALSE	canonical	3	40	junction_24	10.0574521500229	131	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGTATCAAGTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	55845403	55457532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_55458156_55460754_55460807_55463368_55463561_55487490_55487641_55493502_55493738_55510049_55510206_55517125_55517359_55563188_55563313_55593163_55593280_55650826_55650954_55665276_55665343_55669511_55669649_55714296_55714405_55714889_55715043_55716385_55716468_55722644_55722788_55723937_55724094_55745403_55745545_55765364_55765477_55765691_55765810_55766282_55766359_55767031_55767203_55771687_55771889_55781928_55782189_55791130_55791289_55799455_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845353
19137	chr5	-	2817	2	ISM	ENSMUSG00000028959.15	ENSMUST00000132498.2	856	4	-1228	-162	0	-142	intron_retention	FALSE	canonical	3	1128	junction_1	0	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGACTGTACCTCCGGGC	NA	False	NA	NA	False	NA	NA	NA	24650184	24646759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24647394_24648001
19139	chr1	+	3106	12	NIC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	-20	-5	intron_retention	TRUE	canonical	3	76	junction_4	18.0906806746658	236	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTGTGTGTGTACTTA	15	False	NA	NA	False	NA	NA	NA	75168774	75176026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
19140	chr6	-	3007	18	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	264.886461281512	1	74	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6217171	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042830_6052812_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113933_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131773_6152407_6152524_6180970_6181114_6191263_6191318_6216995
19141	chr10	+	3874	6	Antisense	novelGene_ENSMUSG00000111361.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGGGGGACGTGGCTCA	NA	False	NA	NA	False	NA	NA	NA	34027407	34082952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_34029974_34031907_34032115_34035966_34036204_34038730_34038984_34059685_34060159_34082814
19142	chr1	+	2163	16	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-6	-31	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	614.893580675189	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACAAATAAAATATTTTCT	NA	False	NA	NA	False	NA	NA	NA	59724123	59750638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731710_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
19143	chrX	+	2095	16	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	205.655850607	1779	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	56454513	56534133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478571_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
19144	chr11	-	3038	17	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	159	4	intron_retention	FALSE	canonical	3	632	junction_6	81.6681308329632	1	79	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTCTGATAGTTTAATAA	NA	False	NA	NA	False	NA	NA	NA	106146463	106139963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410
19145	chr9	+	3705	18	Antisense	novelGene_ENSMUSG00002075474.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	86	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGCTACTTCCGGGGCGG	4175	False	NA	NA	False	NA	NA	NA	114415188	114469268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_114415407_114420582_114420759_114422502_114422580_114425671_114425739_114426545_114427904_114430409_114430521_114439709_114439794_114442691_114442869_114444056_114444179_114446859_114447066_114448292_114448439_114451910_114452033_114454889_114454974_114455466_114455552_114456460_114456604_114458074_114458226_114461743_114461846_114468992
19146	chr15	+	5291	24	FSM	ENSMUSG00000037119.5	ENSMUST00000037270.5	5560	24	263	6	263	-6	multi-exon	FALSE	canonical	3	296	junction_5	31.8077875639983	233	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGTTACTGTGGAGAGT	NA	False	NA	NA	False	NA	NA	NA	58287579	58329583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_58287627_58292047_58292133_58293594_58293747_58295169_58295228_58296045_58296114_58296625_58296740_58298442_58298534_58298902_58298966_58301840_58301948_58302027_58302067_58302510_58302624_58303054_58303171_58304363_58304477_58304742_58304830_58306512_58306646_58313426_58313576_58314680_58314816_58315009_58315124_58319434_58319508_58320191_58320342_58321779_58321885_58322386_58322511_58324831_58324902_58326598
19147	chr6	+	2225	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	64	248	5	-248	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	2597	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTATAGATTTTTAAAAAT	8	True	NA	NA	False	NA	NA	NA	17637045	17666723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
19148	chr6	+	1981	6	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_2	527.839899969678	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2955	False	NA	NA	False	NA	NA	NA	122285969	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289299_122292015_122292126_122292262_122292394_122293008_122293136_122293286
19150	chr1	+	2713	13	NIC	ENSMUSG00000026554.16	novel	2754	14	NA	NA	-74	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_9	164.268749986789	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	171975576	172023033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172016505_172016637_172020084_172020205_172021351_172021469_172022122
19153	chr7	+	3515	8	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	8	-5	intron_retention	FALSE	canonical	3	106	junction_3	12.7022414862697	14	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGAGCCAGTGCCATGT	NA	False	NA	NA	False	NA	NA	NA	127172519	127182467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
19154	chr7	-	2148	7	ISM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	5	0	-5	intron_retention	FALSE	canonical	3	15796	junction_2	909.956409212368	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919
19155	chr10	-	2636	9	NIC	ENSMUSG00000019795.18	novel	2607	9	NA	NA	10	3	combination_of_known_junctions	FALSE	canonical	3	19	junction_6	321.565215003116	544	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGTCTGGATCCTTGGT	NA	False	NA	NA	False	NA	NA	NA	7539015	7505141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524425_7524814_7524920_7538838
19156	chr3	+	4859	24	NIC	ENSMUSG00000002428.13	novel	4955	25	NA	NA	-1	7	intron_retention	FALSE	canonical	1	1	junction_12	50.0424772309506	137	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTCTTTGGTGTCACTT	6946	False	NA	NA	False	NA	NA	NA	20111982	20172647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735
19157	chr15	-	2140	5	Antisense	novelGene_ENSMUSG00000115902.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTCCCGGGCCAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	79791116	79776643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79776768_79779608_79779763_79781897_79782172_79782310_79782422_79789639
19159	chr16	-	2692	10	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	70	63	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	404.754185422812	2	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGTTTTGTAAGAGTTG	6336	False	NA	NA	False	NA	NA	NA	38370514	38345435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38355041_38355176_38358266_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
19160	chr8	+	3047	4	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17370	-773	at_least_one_novel_splicesite	FALSE	non_canonical	3	44	junction_1	99.6304281945141	87	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAATATGTACGTGTGGC	5842	False	NA	NA	False	NA	NA	NA	21090242	21122014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_21090445_21107448_21107655_21112754_21115301_21121921
19161	chr5	-	406	2	Genic_Genomic	ENSMUSG00000080935.4	novel	1293	1	NA	NA	38	951	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCTGGTTTCTCTGTTAC	1833	False	NA	NA	False	NA	NA	NA	138363776	138361570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_138361625_138363424
19162	chr9	+	2856	10	Intergenic	novelGene_1080	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGAGACAGGGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	58127105	58157068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58127999_58128118_58128993_58129152_58136640_58136691_58137110_58137369_58137772_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156825
19163	chr2	-	1585	6	NIC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	-1	424	intron_retention	FALSE	canonical	3	347	junction_5	36.9464477318186	3	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCAGCAGCAGCTCCCAG	NA	False	NA	NA	False	NA	NA	NA	30068463	30065950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30066505_30066626_30066677_30066750_30067495_30067604_30067734_30067931_30067978_30068401
19166	chr11	-	3058	6	NNC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	411	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_5	232.555369750948	430	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	54678040	54608281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54677935
19168	chr15	-	3374	7	NNC	ENSMUSG00000055065.8	novel	4726	13	NA	NA	7830	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	32.7943931522177	14	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGTGAATTTTTTATTA	6930	False	NA	NA	False	NA	NA	NA	79422926	79411938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79413062_79413104_79414719_79415878_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759
19169	chr5	-	2919	4	ISM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	38118	14	-2	-14	3prime_fragment	FALSE	canonical	3	541	junction_1	12.2565175405668	288	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTTATGGGTACCCCT	5420	False	NA	NA	False	NA	NA	NA	64088122	64066253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820
19170	chr9	+	3441	22	FSM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	16	-1	16	1	multi-exon	FALSE	canonical	3	114	junction_21	32.3776608971381	170	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGACCTGGTATGCTTAA	5752	False	NA	NA	False	NA	NA	NA	21249139	21266322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
19171	chr1	-	4487	12	NIC	ENSMUSG00000016181.11	novel	5504	12	NA	NA	8	1033	intron_retention	FALSE	canonical	0	0	junction_8	24.3995664505582	3	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGAAGCATTATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	192812544	192789027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_192790095_192796064_192796289_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192805696_192805945_192806117_192810574_192810855_192811798_192811839_192812351
19172	chr10	-	2406	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	153	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8248	False	NA	NA	False	NA	NA	NA	128540899	128533812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
19174	chrX	-	2017	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	-10	-9	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	297.547725396933	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTTCAGTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	47602313	47563830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_47564066_47564522_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
19176	chr5	+	2668	3	NNC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	-4930	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	879.5	2	99	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108208609	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208754_108252291_108252397_108254453
19177	chr3	+	2089	11	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-11	674	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	390.575780099074	1075	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTGTTACTTATTACCT	NA	False	NA	NA	False	NA	NA	NA	105866812	105875517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105872644_105872739_105873080_105873190_105873672_105873742_105874478
19178	chr11	+	3598	11	FSM	ENSMUSG00000059248.14	ENSMUST00000019038.15	3784	11	186	0	186	0	multi-exon	FALSE	canonical	3	88	junction_1	218.744622791053	1029	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	882	False	NA	NA	False	NA	NA	NA	117157257	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117157422_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
19179	chr5	+	2307	14	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	16	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	209.00813947515	142	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGGCTAATAAGGTTTATT	NA	False	NA	NA	False	NA	NA	NA	64250308	64285689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261210_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
19180	chr8	+	2936	13	NNC	ENSMUSG00000070002.8	novel	3072	12	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	62.2135100547569	19	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCTGTGGTTTGAGTA	NA	False	NA	NA	False	NA	NA	NA	70992338	71045507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70992492_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147_71044584_71044627_71044674_71044715
19181	chr2	-	2203	4	NIC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	-51	-3	combination_of_known_splicesites	FALSE	canonical	1	7	junction_1	268.06259633816	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534884	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_75507529_75508831_75508922_75509506_75509774_75534707
19182	chr2	+	2283	9	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	37	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	422.364456808335	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8606	False	NA	NA	False	NA	NA	NA	72306539	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313814_72314233_72314361_72314942_72315093_72315519_72315657_72316063
19183	chr3	-	3394	6	NNC	ENSMUSG00000001017.16	novel	2972	6	NA	NA	5	0	intron_retention	FALSE	canonical	3	28	junction_2	635.827775423503	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	90416764	90406262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90407415_90407687_90407822_90409422_90409561_90410402_90410587_90413414_90414934_90416497
19184	chr5	+	2074	15	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	108	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	202.365652082702	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAAGGTTTATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	64250400	64285694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119_64285285_64285471
19185	chr11	-	2644	3	NNC	ENSMUSG00000035455.13	novel	2974	3	NA	NA	2	-89	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	18.5	1	66	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGACGGAGTTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	11758930	11750376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11752762_11752850_11753064_11758884
19186	chr3	+	3375	10	ISM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	14	12	14	-12	intron_retention	FALSE	canonical	3	238	junction_8	30.2267153522783	4	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTATAATAATAGTGTGC	NA	False	NA	NA	False	NA	NA	NA	55089462	55117366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013
19187	chr15	+	2942	13	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-4018	-588	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	413.94672228306	1	120	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTGAGCAAGGTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	101990440	102005020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992614_101992805_101993113_101993247_101994931_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001439_102001619_102002103_102002149_102003106_102003213_102003418_102003485_102003687
19188	chr5	+	2294	14	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-11	-3	intron_retention	FALSE	non_canonical	0	0	junction_8	338.854666792566	7	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCAACCCAGGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	33815918	33829539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825351_33825524_33825577_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
19190	chr11	-	913	1	NIC	ENSMUSG00000000384.16	novel	2324	13	NA	NA	-436	-300	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGGGAACCAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	6568466	6567553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6567600_6568500
19191	chr16	-	3169	10	FSM	ENSMUSG00000044626.14	ENSMUST00000231682.2	2065	10	-17	-1087	-17	-680	multi-exon	FALSE	canonical	0	0	junction_8	60.1727964457259	220	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGCTCTGATGAAAACA	NA	False	NA	NA	False	NA	NA	NA	21814280	21773246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802591_21803019_21814070
19192	chr4	-	3356	10	NNC	ENSMUSG00000028436.9	novel	3442	9	NA	NA	36	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.720808298664	467	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGCTGTTTGAGTGACTA	-17	True	NA	NA	False	NA	NA	NA	41314853	41291303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41291612_41291657_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
19193	chr15	+	2724	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	194	0	-5	0	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	1	106	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	NA	False	NA	NA	NA	81756703	81799334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
19194	chr11	-	2539	8	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	159.616376838663	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATTGCCGATATTTCTT	975	False	NA	NA	False	NA	NA	NA	79145497	79130211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79133181_79137015_79137128_79139216_79139486_79141806_79141976_79145178
19195	chr11	-	2751	10	NIC	ENSMUSG00000041654.16	novel	2664	10	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	159.75845965738	136	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7771	False	NA	NA	False	NA	NA	NA	113456580	113135679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456411
19196	chr15	-	1601	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	129	13	2	-13	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	6	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAAAGAGTTTTGTTT	160	False	NA	NA	False	NA	NA	NA	98832317	98829318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
19197	chr3	+	2707	15	FSM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	38	1397	0	1	multi-exon	FALSE	canonical	3	641	junction_2	81.4479926714224	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742336	157772727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
19198	chr1	+	3318	17	NNC	ENSMUSG00000070732.3	novel	3851	16	NA	NA	-1	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	42.1173954560346	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTCAAGACTCCAAGCTG	4249	False	NA	NA	False	NA	NA	NA	91072809	91098012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_91072892_91077804_91077896_91079886_91081155_91081197_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
19199	chr17	+	2968	8	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	87	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGGGTAGAGAGGCCCG	NA	False	NA	114	True	NA	NA	NA	47084426	47093598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_47086648_47088957_47089073_47089132_47089197_47089334_47089446_47090211_47090345_47091312_47091480_47092708_47092808_47093540
19200	chr7	+	2716	9	Intergenic	novelGene_2888	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAATCTCAGCTAAGCG	8610	False	NA	NA	False	NA	NA	NA	19637598	19655038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_19639037_19639081_19639120_19639706_19639737_19643103_19643229_19644529_19644681_19648661_19648790_19650798_19651096_19652486_19652833_19654875
19202	chr5	+	2013	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-31	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1463.60436401884	2	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	725	False	NA	NA	False	NA	NA	NA	77099592	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104403_77104591_77107161_77107341_77108956_77109123_77109246_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
19203	chr5	-	1878	12	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	33	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	638.95582433729	1	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGTAGAGTTTT	2356	False	NA	-53	True	NA	NA	NA	138170044	138162851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167467_138169980
19204	chr17	-	3170	13	NNC	ENSMUSG00000024335.21	novel	4520	14	NA	NA	-842	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	125.582282676428	8	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	9363	False	NA	NA	False	NA	NA	NA	34338305	34331003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881_34336186_34337579_34337660_34338131
19205	chr8	+	2983	14	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	50	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	142.428721922239	3	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTCTTGCTCCTCTGGT	2443	False	NA	NA	False	NA	NA	NA	70495748	70524993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70496323_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
19207	chr10	+	2342	8	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_7	398.934601565884	54	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	NA	False	NA	NA	NA	72490707	72510796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509258
19208	chr13	-	2383	4	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	15	424	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	64.8913622055269	4	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATAAAACTTTGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	62564842	62549882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62551194_62555228_62555290_62555482_62555610_62563958
19210	chr7	-	1961	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	158	8	-23	-2	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTCTATTGGTGTGCTC	8842	False	NA	NA	False	NA	NA	NA	141941617	141929655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
19211	chr13	+	3358	28	Intergenic	novelGene_1528	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	18	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGAGGGCGCGCTAAAATT	NA	False	NA	NA	False	NA	NA	NA	106974775	107073433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_106975371_106978591_106978719_106983853_106983968_106984748_106984843_106993243_106993327_106993736_106993817_106997368_106997444_107002370_107002488_107007181_107007297_107011998_107012116_107012746_107012788_107013442_107013475_107016118_107016252_107019352_107019459_107020036_107020080_107023172_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032383_107033722_107033772_107035425_107035486_107037189_107037326_107046707_107046912_107047251_107047327_107056032_107056135_107061523_107061663_107073265
19212	chr7	+	4561	6	FSM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-36	-919	-16	0	multi-exon	FALSE	canonical	2	5	junction_5	149.360503480673	408	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGACTGTACGTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	79674545	79742497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79738282_79738381_79740082
19213	chr6	-	2705	16	NNC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	85.3048389926126	1	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGTATCGGAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	146479278	146451135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457744_146458746_146458795_146461642_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
19215	chr3	+	3908	26	NIC	ENSMUSG00000002428.13	novel	4955	25	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	3	76	junction_25	37.5784193387641	135	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTTTGGTGTCACTTAG	6946	False	NA	NA	False	NA	NA	NA	20111982	20172649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735_20170908_20171941
19216	chr2	-	2931	7	ISM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	6234	0	6234	0	3prime_fragment	TRUE	canonical	3	256	junction_2	34.0069437353935	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	129132898	129110129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877
19217	chr8	+	2568	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	6	0	intron_retention	FALSE	canonical	3	179	junction_1	105.994465264308	11	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCATTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	85415923	85426414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
19218	chr11	+	1854	7	FSM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	-302	-10	-277	5	multi-exon	FALSE	canonical	3	5433	junction_6	484.72730019626	28350	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAGTCCTGGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	48690881	48696925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
19219	chr11	-	2935	10	NNC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	35.3389233872912	2	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTTCATAAATTATTGT	1394	False	NA	NA	False	NA	NA	NA	61157950	61135691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153172_61155071_61155158_61155889_61156122_61157679
19222	chr11	+	1906	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	5	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1420.04582807956	23	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940643	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951685_22952166_22952402_22952816_22952931_22953136
19223	chr15	-	3792	11	ISM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	174	-1049	174	0	3prime_fragment	FALSE	canonical	3	77	junction_7	8.59127464349732	121	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGATGTTGGATTTGAG	1848	False	NA	NA	False	NA	NA	NA	100618184	100589695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895
19225	chr9	-	4594	16	NIC	ENSMUSG00000032498.10	novel	2394	17	NA	NA	-8	10	intron_retention	FALSE	canonical	3	322	junction_5	32.5504053567523	15	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTATATAACCGCACA	NA	False	NA	NA	False	NA	NA	NA	111100622	111057312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
19226	chr13	+	4712	2	NIC	ENSMUSG00000062248.6	novel	692	3	NA	NA	93	0	intron_retention	FALSE	canonical	3	3514	junction_1	0	11	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGTTGAAATTAATTTG	NA	False	NA	NA	False	NA	NA	NA	51799360	51804696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_51803749_51804372
19227	chr2	+	4586	15	NIC	ENSMUSG00000039463.15	novel	4521	17	NA	NA	0	-4	intron_retention	TRUE	non_canonical	2	23	junction_6	29.3220158284675	5	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGACCTCTGTTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	167263640	167318914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947
19228	chr2	-	1916	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	-62	8	-62	-2	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	44	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGGAGTACGTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	172212517	172198117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
19230	chr7	+	2683	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	15	3	15	2	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	461	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTTTTGTGTCTGTGTA	411	False	NA	NA	False	NA	NA	NA	27252672	27281521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
19234	chr14	-	3366	11	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6179	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_9	47.2847755625423	6	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCTGTGTGTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	47814285	47778349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47813988_47814069_47814201
19235	chr9	+	2105	9	NNC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	707.635985164689	1921	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTCTGCTCTGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	65537847	65567804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558539_65558669_65558828_65558987_65566416_65566487_65566719
19237	chr11	+	2825	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	23	0	2	0	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	108	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	80319473	80364074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
19238	chr18	+	3194	19	NNC	ENSMUSG00000041238.17	novel	3209	19	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_8	47.134428192009	2	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAAATAACTAAAATGTG	3251	False	NA	NA	False	NA	NA	NA	11790445	11875931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851940_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
19239	chr4	+	3315	14	FSM	ENSMUSG00000028542.18	ENSMUST00000030269.14	3479	14	150	14	-132	-5	multi-exon	FALSE	canonical	2	62	junction_6	13.9750411501337	179	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGTCTCTGAGCTGCT	NA	False	NA	NA	False	NA	NA	NA	117692397	117726488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
19240	chr2	+	3035	21	FSM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	20	-1	20	1	multi-exon	FALSE	canonical	3	340	junction_3	47.7921280128851	877	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	2514	False	NA	NA	False	NA	NA	NA	181243131	181297454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
19241	chr2	-	2608	19	Antisense	novelGene_ENSMUSG00000002455.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	4	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCATCTTTTTCATAGGG	NA	False	NA	NA	False	NA	NA	NA	181297444	181257825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_181257887_181262359_181262441_181263580_181263755_181263949_181264108_181273224_181273321_181273721_181273879_181274545_181274709_181277823_181277943_181278683_181278902_181282381_181282508_181287263_181287383_181289078_181289218_181290815_181290939_181291214_181291390_181291887_181292019_181292874_181292968_181294223_181294340_181296626_181296754_181297212
19242	chr1	-	3033	19	FSM	ENSMUSG00000026198.16	ENSMUST00000027396.15	2966	19	0	-67	0	67	multi-exon	TRUE	canonical	3	123	junction_18	16.1765910736914	284	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAACAGCACTCAT	NA	False	NA	NA	False	NA	NA	NA	75157036	75148293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213
19243	chr1	-	2268	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	22	12	22	-10	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	1492	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCTTTGAAGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	65218318	65197786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
19244	chr16	-	3162	19	NIC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_17	72.4806487584407	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	2000	False	NA	NA	False	NA	NA	NA	15964662	15707087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15958571_15958728_15964608
19245	chr1	-	2799	13	Antisense	novelGene_ENSMUSG00000026439.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	42	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTGTTCCCGGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	132432394	132399293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_132399806_132412465_132412656_132417324_132417466_132418158_132418322_132420288_132420399_132421550_132421670_132421755_132421911_132422000_132422080_132422594_132422710_132423940_132424012_132424593_132424766_132425666_132425744_132431499
19247	chr2	-	3995	18	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	48	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	451.889351677122	1	189	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCTCATGTGTGGTTA	NA	False	NA	NA	False	NA	NA	NA	103627401	103595363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606065_103606257_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
19248	SIRV6	-	1975	1	Antisense	novelGene_SIRV6A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1437	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGGCCGCGTATTTCCC	NA	False	NA	NA	False	NA	NA	NA	10968	8993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV6_-_9000_11000
19249	chr2	-	2313	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	161	1	9	-1	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	28	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGGACTTTTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	75534824	75505857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
19250	chr9	+	3219	14	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	48	-8	intron_retention	FALSE	non_canonical	0	0	junction_2	356.593100120087	1	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTGCCTCTTAGGTTCA	5560	False	NA	NA	False	NA	NA	NA	35122498	35128302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123376_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126927_35127010_35127110_35127233_35127457_35127613
19252	chr8	-	4055	15	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	46.9604696983081	4	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGGTGTTTGTGGACTG	NA	False	NA	NA	False	NA	NA	NA	47070205	47029195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47029757_47030320_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070046
19253	chr17	-	3031	15	ISM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	25587	8	-21722	-5	3prime_fragment	FALSE	canonical	3	178	junction_12	31.2334854322232	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACATACCTGGTGTCCGT	NA	False	NA	NA	False	NA	NA	NA	57112426	57082904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357
19254	chr1	-	2098	11	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	1158	2	at_least_one_novel_splicesite	FALSE	canonical	2	29	junction_2	1922.91253311221	1	83	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGTTACCCTTTCCA	5613	False	NA	NA	False	NA	NA	NA	55126025	55116991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117861_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924
19255	chr5	+	2182	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	6	5	6	-5	multi-exon	FALSE	canonical	3	507	junction_4	39.7106723690244	1600	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTGTGAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	33492858	33530635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
19256	chr11	+	221	1	Intergenic	novelGene_2458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGTGTGTAAATTCTT	4370	False	NA	NA	False	NA	NA	NA	95755732	95755953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_95755700_95756000
19258	chr7	-	3375	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	13	0	13	0	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	409	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGGTTTCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	125995896	125982025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
19259	chr13	+	3661	4	NIC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	4	1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	176.305290775846	31	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGCCGTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	58550080	58558959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_58550332_58552384_58552470_58554815_58554905_58555723
19260	chr12	+	3820	20	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	147.241242114774	2	116	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGTGTAGTGCATATAC	4008	False	NA	NA	False	NA	NA	NA	83679052	83729898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276_83728977_83729356
19261	chr11	+	1103	7	ISM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	3520	0	-1042	0	3prime_fragment	FALSE	canonical	3	373	junction_4	104.705008900668	36	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	2206	False	NA	NA	False	NA	NA	NA	101014283	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
19262	chr14	-	2602	17	NNC	ENSMUSG00000040760.12	novel	1226	8	NA	NA	-16	12485	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.742582175718	2	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAGAACCATAAGTTT	NA	False	NA	NA	False	NA	NA	NA	26692478	26660597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_26661370_26661736_26662069_26664600_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
19263	chr19	+	3002	7	ISM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	51554	8	-201	-8	3prime_fragment	FALSE	canonical	3	335	junction_5	23.7182536362936	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTACATCATCTGTCC	NA	False	NA	NA	False	NA	NA	NA	3424838	3435725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
19264	chr7	-	2412	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	316.607233950157	1	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153804	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122797_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
19265	chr7	+	3352	27	Intergenic	novelGene_2955	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.576923076923077	1	115	13	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTGCGGCGCGCCCGCT	NA	False	NA	NA	False	NA	NA	NA	44182172	44198246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_44182319_44182626_44182723_44182793_44182849_44183106_44183227_44183378_44183444_44183810_44183911_44183986_44184140_44184439_44184615_44185120_44185259_44185352_44185453_44187033_44187184_44187432_44187530_44187750_44187864_44188020_44188116_44188195_44188389_44188477_44188597_44188791_44188931_44189954_44190056_44190269_44190434_44190697_44190830_44190915_44190993_44191074_44191246_44191321_44191452_44191530_44191673_44192186_44192302_44192663_44192863_44198179
19266	chr2	+	2786	21	NNC	ENSMUSG00000027176.9	novel	2817	21	NA	NA	-9	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_14	66.1410613764249	373	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCCTCCTGTTTCTTTG	6891	False	NA	NA	False	NA	NA	NA	104420858	104495770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484614_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
19267	chr15	-	1447	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	130	166	3	-166	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTAAGTCCATTCCTT	161	False	NA	NA	False	NA	NA	NA	98832316	98829471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
19268	chr5	-	2142	13	FSM	ENSMUSG00000029012.12	ENSMUST00000135906.8	2117	13	-29	4	-29	0	multi-exon	FALSE	canonical	3	527	junction_9	41.555434863164	1213	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	22755331	22691486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
19269	chr5	+	2944	19	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	101	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	189.537220684201	2	84	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGCATCATTCCTATAC	NA	False	NA	NA	False	NA	NA	NA	45827361	45857458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828559_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853384_45853489_45857236
19270	chr17	-	2932	5	NIC	ENSMUSG00000073406.11	novel	1064	6	NA	NA	-82	-3	intron_retention	FALSE	canonical	1	1	junction_3	208.053328500171	49	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGAAACTATGTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	36395197	36391009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36391216_36391890_36392008_36392133_36394327_36394587_36394858_36395051
19271	chr11	+	3451	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	30	5	30	-5	multi-exon	TRUE	canonical	3	173	junction_11	15.0937896237857	304	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGATGTGCAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	114566286	114611798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
19272	chr15	-	1894	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	104	2419	104	1182	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTCACTGTTGTAATTC	259	False	NA	NA	False	NA	NA	NA	37007542	36999689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
19273	chr3	-	2264	17	NNC	ENSMUSG00000042520.17	novel	3494	26	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	308.586438204517	8	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAACTCTGCGTTCTTTC	3535	False	NA	NA	False	NA	NA	NA	89959794	89913529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89946217_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
19276	chr6	+	1973	8	Antisense	novelGene_ENSMUSG00000030177.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACAGATTCTGAATCTTT	NA	False	NA	NA	False	NA	NA	NA	120301348	120318992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_120302452_120306051_120306207_120306293_120306423_120308774_120308993_120311729_120311887_120315035_120315121_120316092_120316158_120318931
19277	chr3	-	3800	13	ISM	ENSMUSG00000027889.18	ENSMUST00000136712.8	4288	15	4829	0	-108	0	3prime_fragment	TRUE	canonical	3	199	junction_7	20.6330371545786	2	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107988042	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_107982438_107982564_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107987090_107987378_107987491_107987582
19278	chr5	-	2534	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	-13	0	-13	0	multi-exon	FALSE	canonical	3	188	junction_1	171.680966232913	1101	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	125418171	125354150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
19279	chr2	+	2880	10	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-448	intron_retention	FALSE	canonical	3	948	junction_8	57.2262134530395	3	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGCTTCCAACTGGGCT	NA	False	NA	NA	False	NA	NA	NA	164675725	164681491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164680073_164680560_164680870_164681070
19280	chr2	-	3926	21	FSM	ENSMUSG00000006800.15	ENSMUST00000109249.9	4580	21	-173	827	-173	-2	multi-exon	FALSE	canonical	0	0	junction_20	203.951336107416	780	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTATCTTGGGACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	165997756	165915835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997422
19281	chr10	-	2341	9	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_8	387.75908677296	167	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGAATCTCTTTCATATT	8248	False	NA	NA	False	NA	NA	NA	128540899	128533806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580_128540715_128540785
19282	chr15	-	3122	18	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	8.52352738196704	3	55	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCAGCCCCGAGCTCC	7010	False	NA	NA	False	NA	NA	NA	98560759	98543014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549394_98549447_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
19283	chr8	-	2201	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	1	-300	0	300	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	2337	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTTCGTTTTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	31658791	31649190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
19285	chr17	-	1236	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-210	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821658	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
19287	chr12	-	3636	4	FSM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	34	985	3	216	multi-exon	FALSE	canonical	3	147	junction_1	30.6920185064456	514	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTACATAGTTGGTAAAA	NA	False	NA	NA	False	NA	NA	NA	81579651	81545699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81548941_81551317_81551414_81557602_81557740_81579489
19288	chr4	-	3218	17	NIC	ENSMUSG00000028678.14	novel	2842	20	NA	NA	-7	-16	intron_retention	FALSE	canonical	3	415	junction_12	22.9291537948961	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAGAAGAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	117039796	117016851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035444_117037768_117037864_117039627
19289	chr9	+	2654	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	-48	-5	-48	5	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	681	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCAAATAACGTGTTGCC	2078	False	NA	NA	False	NA	NA	NA	114517809	114553375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
19291	chrX	+	3269	12	NNC	ENSMUSG00000044150.13	novel	630	2	NA	NA	-251	-14	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_1	184.36000534348	12	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTACCTGGCAGTTGGT	NA	False	NA	NA	False	NA	NA	NA	158309432	158376063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158309518_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
19293	chr15	-	2440	9	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	31	-9	intron_retention	FALSE	canonical	3	334	junction_8	45.2320406349305	56	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCAATCAAACCCAACTA	8697	False	NA	NA	False	NA	NA	NA	76501017	76496599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
19294	chr5	+	1751	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	-2	intron_retention	FALSE	canonical	0	0	junction_4	6624.55618437945	20	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345252_121346487_121346639_121346844
19295	chr3	+	4670	5	NNC	ENSMUSG00000027698.15	novel	4480	5	NA	NA	33676	285	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	53.0630521172689	3	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTAGTAAAAACAAATTCT	NA	False	NA	NA	False	NA	NA	NA	27276265	27299392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_27276422_27276816_27277046_27280221_27280292_27293680_27293853_27295349
19296	chrX	+	3446	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	22	-1	-6	1	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	281	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGCTGTTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	20570166	20586779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
19297	chr18	+	2829	21	NNC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	12	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	207.334819796386	1	73	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAGCATAATGCC	0	True	NA	NA	False	NA	NA	NA	3383243	3435397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383398_3399845_3399987_3405684_3405781_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
19298	chr16	-	2404	11	Antisense	novelGene_ENSMUSG00000004069.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	411	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCCCCACTGCCACCCTC	NA	False	NA	NA	False	NA	NA	NA	4525544	4502046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_4502206_4505097_4505237_4507846_4507927_4511073_4511281_4512230_4512380_4514251_4514399_4515112_4515179_4517611_4517740_4519030_4519147_4520072_4520170_4524428
19299	chr6	-	2939	14	ISM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	5319	14	266	-14	3prime_fragment	FALSE	canonical	1	1040	junction_8	580.768914926048	1	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAATAGCGCTATCCCTT	4601	False	NA	NA	False	NA	NA	NA	88870443	88860469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319
19301	chr16	-	3312	24	NNC	ENSMUSG00000022680.15	novel	3178	23	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	62.3594070864526	65	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAACTTTTGAATAA	9772	False	NA	NA	False	NA	NA	NA	13720917	13653455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13695900_13695964_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
19302	chr10	-	2422	4	NIC	ENSMUSG00000004667.19	novel	900	6	NA	NA	-12	-2	intron_retention	FALSE	canonical	3	2552	junction_1	196.598293199328	3	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTGTGGTGCAATCCTA	5588	False	NA	NA	False	NA	NA	NA	79875556	79871786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79872433_79872597_79872808_79873021_79874448_79875416
19304	chr2	+	3143	4	FSM	ENSMUSG00000026655.16	ENSMUST00000027965.11	3156	4	13	0	-7	0	multi-exon	FALSE	canonical	3	121	junction_1	8.49836585598797	313	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTTTGTCTCGTTTGT	957	False	NA	NA	False	NA	NA	NA	3714507	3783179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_3714674_3773832_3774017_3779454_3779606_3780537
19305	chr16	+	1898	10	NIC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	3	38	combination_of_known_junctions	FALSE	canonical	1	23	junction_6	282.891420081196	1777	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7073	False	NA	NA	False	NA	NA	NA	38379062	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38405980_38406043_38406582_38406771_38408544_38408666_38411273
19306	chr19	+	2708	6	NNC	ENSMUSG00000024772.10	novel	3353	5	NA	NA	-40	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	167.142334553518	13	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGTGCCAAAGCCTCTC	NA	False	NA	NA	False	NA	NA	NA	6326914	6350110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103_6349482_6349950
19307	chr15	-	2276	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	49	0	intron_retention	FALSE	canonical	3	334	junction_10	42.1835275907551	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAACTACACTGTCTT	8715	False	NA	NA	False	NA	NA	NA	76500999	76496590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
19310	chr1	+	3179	14	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-7	intron_retention	FALSE	canonical	1	35	junction_8	651.08294856889	1	113	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724146	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743805_59743910_59744751_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
19311	chr17	+	4284	6	FSM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	-75	0	-75	0	multi-exon	FALSE	canonical	3	33	junction_5	11.689311356962	116	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGTGGAAATTCAATGAG	NA	False	NA	NA	False	NA	NA	NA	21926647	21944617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924_21940052_21940968
19312	chr15	-	3575	8	FSM	ENSMUSG00000023022.15	ENSMUST00000109024.9	4109	8	534	0	534	0	multi-exon	FALSE	canonical	3	692	junction_4	113.402839830547	2	134	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	6305	False	NA	NA	False	NA	NA	NA	99717490	99676350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374
19313	chr7	+	2720	9	NNC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	14	-11	intron_retention	FALSE	canonical	2	7	junction_5	272.524052837543	3	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTCCTTCTAGAGGACTG	NA	False	NA	NA	False	NA	NA	NA	63835220	63861164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63852879_63854169_63854342_63858097_63858199_63858616_63858741_63859704_63859778_63860585
19314	chr4	-	3397	11	NNC	ENSMUSG00000028893.9	novel	3475	10	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	240.200104079911	410	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTAATGGGATGTT	NA	False	NA	NA	False	NA	NA	NA	132237783	132219342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132219961_132220009_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
19315	chr7	-	4618	1	Genic_Genomic	ENSMUSG00000036835.8	novel	NA	NA	NA	NA	-4321	-964	mono-exon	FALSE	NA	NA	NA	NA	NA	29	68	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCCTTGCGTCACTTCCG	NA	False	NA	NA	False	NA	NA	NA	30267373	30262755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_30262800_30267400
19316	chr6	+	2752	9	NIC	ENSMUSG00000015733.14	novel	2537	10	NA	NA	-2	-463	intron_retention	FALSE	canonical	3	1705	junction_6	91.7856708588002	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATATCTACTGCCACCAC	-6	True	NA	NA	False	NA	NA	NA	17637031	17666508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
19317	chr2	-	3093	9	ISM	ENSMUSG00000039671.19	ENSMUST00000109266.11	5072	22	49894	5	43843	-2	3prime_fragment	FALSE	canonical	3	102	junction_8	24.3871764458291	3	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGATGGCGTTTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	165650199	165626076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594
19318	chr12	-	3142	3	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-3	2	intron_retention	FALSE	canonical	3	56	junction_2	6.5	86	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008978	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_76986865_76999942_77000051_77008763
19319	chr3	-	2313	8	NNC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	3	0	intron_retention	FALSE	canonical	0	0	junction_2	358.071820409577	2	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	6157	False	NA	NA	False	NA	NA	NA	153618589	153612927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153613379_153613691_153613797_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153617670_153618570
19320	chrX	+	5769	6	NNC	ENSMUSG00000031365.14	novel	6376	6	NA	NA	54	-5	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	11.6206712370672	81	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATAGGTCTTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	72386280	72402681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72386358_72388442_72388519_72395414_72395530_72396441_72396544_72396826_72396928_72397383
19321	chr1	+	2429	19	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	3	25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	150.815611809362	67	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATGTGCTTGCTAAGT	NA	False	NA	NA	False	NA	NA	NA	45834669	45862804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45862040_45862135_45862467
19322	chr7	-	3796	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	-59	3	-3	-3	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	469	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTCACTGTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	144493665	144483670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
19325	chr2	-	3385	22	Intergenic	novelGene_2751	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	22	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGACCTCACAGTAGGGA	NA	False	NA	NA	False	NA	NA	NA	156382747	156274935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_156275012_156280502_156280553_156335822_156336013_156336874_156337042_156337778_156337883_156338403_156338447_156341505_156341581_156345562_156345781_156347682_156347772_156348268_156348422_156350730_156350830_156351050_156351226_156352647_156352799_156353701_156353739_156355945_156356129_156368806_156368912_156371307_156371390_156375699_156375787_156376604_156376690_156378899_156378978_156379283_156379401_156381726
19326	chr4	+	3727	15	NNC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	6	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	79.9887747226613	2	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAATATTCTTTAGAGCA	NA	False	NA	NA	False	NA	NA	NA	62327039	62345184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454_62342024_62343470
19327	chr4	-	2833	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	12	-365	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	869.194661382017	1	113	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTGGGAGGTGAAGAGT	9827	False	NA	NA	False	NA	NA	NA	43000421	42980327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984410_42984530_42984696_42985168_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
19328	chr17	-	1237	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-212	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821660	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820304_35820434_35820875_35821037_35821184
19329	chr7	-	4504	16	FSM	ENSMUSG00000042246.6	ENSMUST00000044195.6	4546	16	27	15	0	-15	multi-exon	FALSE	canonical	3	106	junction_8	12.8571640211466	133	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAAGTAGCTATATATGT	4171	False	NA	NA	False	NA	NA	NA	118183932	118135078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_118137441_118138637_118138717_118141108_118141265_118142521_118142653_118144824_118145012_118146539_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
19330	chr19	-	1570	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1087.72606845658	47	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883032_15884328_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
19331	chr6	-	2802	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-5	-30	intron_retention	FALSE	canonical	0	0	junction_1	279.574416151884	1	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAAGCTGCCTCGTCATC	9167	False	NA	NA	False	NA	NA	NA	88495815	88480590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88481554_88481821_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
19332	chr6	+	1560	10	Antisense	novelGene_ENSMUSG00000004980.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCGCTGGAGCCGAGAC	6911	False	NA	NA	False	NA	NA	NA	51439739	51446822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_51440165_51441063_51441194_51441409_51441526_51442156_51442225_51443124_51443202_51443281_51443385_51443474_51443685_51443884_51444031_51444162_51444276_51446650
19334	chr18	+	3746	13	NNC	ENSMUSG00000000420.16	novel	3977	13	NA	NA	82	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	228.023192655679	202	20	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATACTCTGAGTAGTTG	NA	False	NA	NA	False	NA	NA	NA	24338482	24419873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24338576_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400706_24402601_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
19335	chr13	+	2248	5	Intergenic	novelGene_1393	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	67.9613860953409	95	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCCATGTGTCTAGGCAT	NA	False	NA	NA	False	NA	NA	NA	61919439	61935474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_61919514_61924014_61924309_61928416_61928544_61928736_61928798_61933782
19336	chr15	+	2192	18	NIC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	4	17	intron_retention	FALSE	canonical	1	369	junction_13	168.29893901024	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	NA	False	NA	NA	NA	89239969	89255783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255197_89255296_89255447_89255513
19338	chr19	+	2907	7	NIC	ENSMUSG00000024835.16	novel	2814	8	NA	NA	-3	0	intron_retention	FALSE	canonical	3	402	junction_1	89.5519712544372	47	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3607	False	NA	NA	False	NA	NA	NA	4198649	4204034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200826_4201393_4201499_4201578_4201725_4202520
19340	chr16	-	2852	20	NNC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	510.337501709378	2	89	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAAAGAAAACTTATCTA	NA	False	NA	NA	False	NA	NA	NA	91443834	91418294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418789_91421315_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
19341	chr2	+	2400	2	FSM	ENSMUSG00000065258.3_ENSMUSG00000062647.17	ENSMUST00000147143.2	593	2	-1813	6	-11	-6	multi-exon	FALSE	canonical	3	4686	junction_1	0	72	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26803070_26803176
19342	chr3	-	2493	9	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	6	0	intron_retention	FALSE	canonical	3	357	junction_8	249.576015474244	50	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6106	False	NA	NA	False	NA	NA	NA	153618640	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153617670_153618570
19343	chr4	+	1836	7	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	7	-11	multi-exon	TRUE	non_canonical	0	0	junction_1	37.4985184892535	2	24	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCAACAAGTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	147576880	147669644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147646898_147646979_147661528_147661572_147665716_147665826_147667290_147667939_147668611_147668829_147669033
19344	chr11	+	1927	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	-1	0	-1	0	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	1492	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGTGGTGTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	4823949	4844200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
19345	chrX	+	1211	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	67	-68	67	68	mono-exon	FALSE	NA	NA	NA	NA	NA	26	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068876	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068900_13070100
19346	chr1	-	2345	14	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	-41	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	1187.69977080158	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287442	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261278_128267120_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281306_128283249_128283397_128287195
19347	chr15	+	2734	18	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	478.596166572027	1	97	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCTGCCTGAGTGATTG	NA	False	NA	NA	False	NA	NA	NA	81756684	81799333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788200_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
19350	chr5	+	2677	8	NNC	ENSMUSG00000014956.16	novel	5962	8	NA	NA	50	-5	intron_retention	FALSE	canonical	1	17	junction_2	473.981744245019	17	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACGTCTGAGTGATTAT	3124	False	NA	NA	False	NA	NA	NA	32616615	32650095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_32616752_32635409_32635542_32638117_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
19351	chr5	-	2025	13	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTCCGCTACGCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	33829540	33815928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816069_33821161_33821256_33821494_33822198_33824034_33824086_33824401_33824509_33825303_33825396_33825475_33825579_33826004_33826082_33826160_33826205_33826820_33826990_33828745_33828855_33829008_33829128_33829323
19352	chrUn_JH584304v1	+	3887	26	Intergenic	novelGene_4585	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	14.6743858474554	60	72	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCTCCTACTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	4975	52728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_5089_14083_14202_19242_19346_20219_20377_24796_24959_26983_27055_28052_28146_29421_29520_31432_31500_38114_38246_39081_39164_39432_39612_40110_40187_41049_41127_41974_42078_44213_44311_47516_47678_47923_47999_48581_48657_48768_48946_49051_49969_50092_50277_51408_51545_51650_51730_52288_52401_52484
19353	chr1	+	3109	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	32.1742478112888	177	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	NA	False	NA	NA	NA	180468908	180518252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180468963_180469414_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
19354	chr2	-	4781	7	FSM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	11	0	11	0	multi-exon	FALSE	canonical	3	96	junction_4	19.5078331845327	174	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTTCCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	10053396	9919362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_9921278_9922913_9923021_9925862_9926113_9945737_9945821_9955924_9957757_10047237_10047481_10053045
19355	chr3	+	3286	6	NIC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	2653	-12	intron_retention	FALSE	canonical	3	1281	junction_2	72.8302135106029	2	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCCTACTAGGGCTTT	NA	False	NA	NA	False	NA	NA	NA	90390638	90395258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
19356	chr11	-	2805	18	NIC	ENSMUSG00000018160.16	novel	2627	18	NA	NA	4	-12	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	56.1624559050546	127	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATAAAAAGAAATGTGCCT	NA	False	NA	NA	False	NA	NA	NA	98084115	98042992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_98043952_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
19358	chr1	+	2794	2	NNC	ENSMUSG00000067017.6	novel	2858	2	NA	NA	-10	-14	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	89	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTCATTCATACTATCTA	NA	False	NA	NA	False	NA	NA	NA	105383685	105386540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_105384378_105384438
19359	chr11	+	2597	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	22	-752	22	752	multi-exon	TRUE	canonical	3	226	junction_6	21.0698243941424	567	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017272	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
19360	chr6	-	2351	11	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-29	49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	584.627069164609	2	48	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATGTTTGTTTTTTATTT	8927	False	NA	NA	False	NA	NA	NA	47790327	47773025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773374_47773433_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
19361	chr18	-	2095	20	FSM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	14	2022	14	0	multi-exon	FALSE	canonical	3	60	junction_19	109.003545140448	1437	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	2868	False	NA	NA	False	NA	NA	NA	56706009	56659815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
19362	chr16	-	3869	6	Fusion	ENSMUSG00000022505.10_ENSMUSG00000116270.2	novel	3440	5	NA	NA	-5328	-12	multi-exon	FALSE	canonical	1	2	junction_4	65.4113140060647	10	33	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGAATTTGGATAATTG	NA	False	NA	NA	False	NA	NA	NA	10154477	10099624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10146083_10146285_10154080
19363	chr3	-	1660	2	Genic_Genomic	ENSMUSG00000069008.4	novel	1252	1	NA	NA	-44	418	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATGGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58011712	58009998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_58010122_58010175
19367	chr1	-	3374	4	NIC	ENSMUSG00000003051.14	novel	2095	9	NA	NA	53	1	combination_of_known_junctions	FALSE	canonical	3	306	junction_2	156.467248969233	4	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGCTCTCTGTGTACT	NA	False	NA	NA	False	NA	NA	NA	135186123	135181311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135182119_135182662_135185025_135185352_135185521_135186086
19368	chr14	+	4051	11	NNC	ENSMUSG00000022009.2	novel	3974	10	NA	NA	8	145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	147.797462765773	945	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTTATAAGAGTTGCCT	NA	False	NA	NA	False	NA	NA	NA	76348338	76374964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225_76372912_76372971
19369	chr17	+	3397	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	4	1041	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	181.227236431199	2	70	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCCCTGGCCGTCCTGGA	NA	False	NA	NA	False	NA	NA	NA	32255387	32280681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
19370	chr14	+	3235	2	NNC	ENSMUSG00000021770.12	novel	6801	6	NA	NA	2433	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGTGGCTTGTTAT	5941	False	NA	NA	False	NA	NA	NA	21844372	21848787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21844965_21846144
19371	chr9	+	2532	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	3	0	-3	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	809	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20927280	20940110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
19373	chr13	-	3637	4	FSM	ENSMUSG00000091183.6	ENSMUST00000201047.4	3279	4	39	-397	15	397	multi-exon	TRUE	canonical	3	25	junction_3	2.05480466765633	106	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGATGAAACCCCAACAT	NA	False	NA	NA	False	NA	NA	NA	62933583	62919616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_62922977_62924530_62924592_62924776_62924904_62933494
19374	chr1	+	2811	7	FSM	ENSMUSG00000034432.12	ENSMUST00000191510.7	2593	7	-3	-215	-3	-2	multi-exon	FALSE	canonical	3	708	junction_6	25.9293913027925	10	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTGTAGTGGGTTACCT	NA	False	NA	NA	False	NA	NA	NA	90531194	90541061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_90531350_90532096_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
19375	chr7	+	1914	18	Antisense	novelGene_ENSMUSG00000036427.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	37	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTCGGTACCAGTGCGC	NA	False	NA	NA	False	NA	NA	NA	33901649	33929710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_33901975_33902061_33902129_33902239_33902313_33903450_33903583_33904992_33905072_33905232_33905360_33907029_33907183_33907280_33907328_33907676_33907727_33915387_33915434_33917721_33917768_33918455_33918540_33920059_33920189_33920270_33920354_33926544_33926662_33928351_33928426_33928710_33928799_33929516
19376	SIRV7	+	2424	5	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTCTTATATTGTATTAA	NA	False	NA	NA	False	NA	NA	NA	1006	147849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_2679_2996_3111_3808_3901_114683_114993_147612
19378	chr18	-	2470	20	Antisense	novelGene_ENSMUSG00000024271.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCAATGGCCGAGCTCC	NA	False	NA	NA	False	NA	NA	NA	24771839	24737043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_24737190_24739914_24739977_24745504_24745582_24747471_24747536_24748215_24748284_24748944_24749083_24750456_24750552_24752132_24752234_24752436_24752571_24755135_24755290_24755530_24755725_24758568_24758635_24759180_24759274_24759443_24759507_24760055_24760123_24764413_24764607_24765813_24765936_24767393_24767528_24767955_24768064_24771448
19379	chr2	+	2167	22	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	67	28621	67	1557	5prime_fragment	FALSE	canonical	3	956	junction_9	65.1473821875882	4	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCACAGAGGTATGGTAGT	NA	False	NA	NA	False	NA	NA	NA	146854982	146891299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211
19380	chr11	-	2953	20	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-9	-846	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.483896952781	8	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGGTATTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	79853225	79825624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826377_79826463_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
19381	chr7	+	2274	13	NIC	ENSMUSG00000008373.17	novel	3144	14	NA	NA	31	-37	intron_retention	FALSE	canonical	3	674	junction_1	80.3721811325287	498	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGAGTACAATTAAATGTG	2971	False	NA	NA	False	NA	NA	NA	3633021	3644191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
19384	chr6	-	2508	2	ISM	ENSMUSG00000055850.13	ENSMUST00000133978.2	728	4	38	-897	0	-2	intron_retention	FALSE	canonical	3	875	junction_1	0	37	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCGTGTGGTTCTGCTGT	8450	False	NA	NA	False	NA	NA	NA	72339373	72336698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_72337933_72338099
19385	chr3	-	2605	4	NNC	ENSMUSG00000027944.14	novel	1280	6	NA	NA	-1	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	929.739150992841	36	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGGTCTTAGTCTTGG	7200	False	NA	NA	False	NA	NA	NA	89905994	89902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903706_89904120
19386	chr11	+	2660	6	NIC	ENSMUSG00000020372.16	novel	1542	7	NA	NA	-3	0	intron_retention	FALSE	canonical	3	5433	junction_5	527.977499520576	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691155	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
19387	chr11	-	4085	4	FSM	ENSMUSG00000025575.15	ENSMUST00000017620.10	4182	4	90	7	27	-6	multi-exon	FALSE	canonical	3	163	junction_2	3.68178700572909	187	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGGTTCTCTTGTCTA	9048	False	NA	NA	False	NA	NA	NA	118309822	118297121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399
19388	chr11	-	2460	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	2	14	0	2	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	123	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATTGCCGATATTTCTT	977	False	NA	NA	False	NA	NA	NA	79145495	79130211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
19389	chr9	-	2993	20	Antisense	novelGene_ENSMUSG00000032604.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.223296878269436	1	117	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGGGCCTCATCTGAA	NA	False	NA	NA	False	NA	NA	NA	108393126	108385256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108385394_108385576_108385729_108386074_108386186_108386347_108386423_108386638_108386702_108387290_108387354_108387485_108387546_108388335_108388407_108388526_108388614_108388726_108388816_108389679_108390166_108390262_108390394_108390482_108391005_108391090_108391177_108391260_108391397_108391486_108391592_108391739_108391824_108391935_108392071_108392163_108392429_108392991
19390	chr9	+	1905	5	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-41	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	663.551194332434	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAATTTCCTGTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	108183596	108215128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108213733
19391	chr11	-	2428	24	NNC	ENSMUSG00000018340.14	novel	2471	25	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	161.876075731221	1	45	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	54924279	54869933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877035_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54924184
19392	chr2	-	4534	25	NNC	ENSMUSG00000034032.16	novel	4813	26	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_17	133.907092325239	3	153	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGACTGATCTGGACTG	482	False	NA	NA	False	NA	NA	NA	119618000	119594450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605531_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119617701_119617779_119617915
19393	chr11	+	4383	30	NNC	ENSMUSG00000017774.20	novel	4652	32	NA	NA	1295	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	81.7977552901746	1	136	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCCTGTGAGTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	75548318	75564740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553501_75556353_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562157_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
19394	chr7	+	3440	1	Antisense	novelGene_ENSMUSG00000030879.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGAGCTGTGTGTGCGCGC	NA	False	NA	NA	False	NA	NA	NA	105456792	105460232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105456800_105460200
19395	chr16	-	2459	5	FSM	ENSMUSG00000071533.12	ENSMUST00000130818.8	938	5	-29	-1492	1	-1	multi-exon	FALSE	canonical	3	279	junction_4	876.141113063415	1828	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55850068	55835869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
19396	chr15	+	450	2	NNC	ENSMUSG00000022337.8	novel	1231	11	NA	NA	-2715	-379	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGATTTTATGTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	43355590	43356649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_43355680_43356288
19397	chr19	-	2746	6	Antisense	novelGene_ENSMUSG00000071644.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAACAAACATGGGGGT	NA	False	NA	NA	False	NA	NA	NA	8955539	8947915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8949788_8949868_8950000_8950266_8950478_8954679_8954852_8954945_8955073_8955306
19398	chr16	-	5438	18	FSM	ENSMUSG00000033149.18	ENSMUST00000036355.13	5483	18	28	17	-7	-17	multi-exon	TRUE	canonical	3	48	junction_15	7.72315083521806	74	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGCGTTGACCTCATTC	NA	False	NA	NA	False	NA	NA	NA	45664713	45566622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45568295_45569089_45569176_45571708_45571929_45577461_45577609_45578479_45578571_45583272_45583478_45591034_45591135_45592497_45592639_45595306_45595451_45598075_45598166_45600618_45600730_45601664_45601821_45609351_45609481_45621854_45621993_45623058_45623203_45628488_45628873_45645121_45646459_45664570
19399	chr8	-	4005	26	NIC	ENSMUSG00000038102.16	novel	4332	30	NA	NA	2592	-3	intron_retention	FALSE	canonical	0	0	junction_20	33.2838459316227	1	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACATCTGTCGTAAATAC	6646	False	NA	NA	False	NA	NA	NA	47983910	47943166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686
19400	chr12	+	4211	5	FSM	ENSMUSG00000034157.13	ENSMUST00000185434.7	2695	5	21	-1537	21	-18	multi-exon	FALSE	canonical	1	1	junction_2	39.7649343014672	1	89	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCACTTACTTGAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	86993837	87012118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86994025_86999517_86999706_87006501_87006603_87007045_87007216_87008553
19401	chrX	+	1962	8	NNC	ENSMUSG00000031007.3	novel	2324	9	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	359.260635307617	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTGAGGAATTATGGTTA	NA	False	NA	NA	False	NA	NA	NA	12454039	12483279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473187_12482020
19402	chr7	-	2066	5	NIC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-2	1	intron_retention	FALSE	canonical	0	0	junction_1	913.790183794945	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8863	False	NA	NA	False	NA	NA	NA	141941596	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141931193_141936328_141936448_141937154_141937279_141939195_141939356_141941473
19403	chr14	-	2647	15	NNC	ENSMUSG00000021810.4	novel	3132	14	NA	NA	-14	-407	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	138.101504373428	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAGTGTTCAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	20398152	20370326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20370892_20370932_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
19404	chr2	-	2637	4	ISM	ENSMUSG00000027201.17	ENSMUST00000149911.2	1801	10	13748	-1579	7046	1579	3prime_fragment	FALSE	canonical	3	625	junction_2	24.2807651352991	3	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTAGCATGGAGCGAGA	NA	False	NA	NA	False	NA	NA	NA	124951747	124939975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_124942341_124950875_124950940_124951073_124951124_124951589
19405	chr8	-	1979	3	ISM	ENSMUSG00000051176.7	ENSMUST00000209356.2	1744	4	2048	0	2034	0	3prime_fragment	FALSE	canonical	3	4280	junction_2	24.5	1	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43757939	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43749574_43753664_43753743_43757512
19406	chr2	+	3463	5	FSM	ENSMUSG00000005804.15	ENSMUST00000005954.9	3484	5	21	0	-3	0	multi-exon	FALSE	canonical	3	133	junction_2	4.54835134966506	12	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTGTTTATCAGACACCG	8290	False	NA	NA	False	NA	NA	NA	122580443	122591395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_122580625_122584508_122584651_122586045_122586134_122587974_122588062_122588430
19407	chr11	-	2968	11	NIC	ENSMUSG00000025137.16	novel	1486	13	NA	NA	3	-1	intron_retention	FALSE	canonical	3	349	junction_5	34.9978570772555	22	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTAGGCTCCCGACCC	NA	False	NA	NA	False	NA	NA	NA	120508748	120500913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
19408	chr9	+	1939	13	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-8	0	intron_retention	FALSE	canonical	3	50	junction_7	899.611409165091	62	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGACAACTGATCTTT	1140	False	NA	NA	False	NA	NA	NA	108437629	108442768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108437831_108438232_108438282_108438795_108439057_108439372_108439580_108439990_108440079_108440334_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
19409	chr4	+	2298	15	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-22	-2388	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	321.894582820183	8	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATCTTCAGACACACCA	NA	False	NA	NA	False	NA	NA	NA	124923828	124946781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124936581_124936683_124937357_124937517_124938016_124938131_124938292_124938394_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196
19411	chr4	+	2481	19	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	17	-379	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	110.887942547732	7	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	NA	False	NA	NA	False	NA	NA	NA	44300892	44364296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709_44363750_44363827
19412	chr3	+	3467	16	FSM	ENSMUSG00000025758.11	ENSMUST00000026858.11	3479	16	12	0	3	0	multi-exon	FALSE	canonical	3	256	junction_10	36.6472675955824	271	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTTATTGGCTAAATA	7797	False	NA	NA	False	NA	NA	NA	40754465	40771318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
19413	chr6	-	2751	7	NIC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	22	0	intron_retention	FALSE	canonical	3	685	junction_1	70.5275753793429	39	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	142453647	142435974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_142436331_142438218_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
19414	chr11	-	3371	14	NNC	ENSMUSG00000038909.17	novel	3414	15	NA	NA	3319	4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	253.247966515782	1	118	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCTCTGAAGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	95197020	95165080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167376_95168294_95168463_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874
19416	chr16	-	1948	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	12	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAATAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	45975428	45973356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45974661_45974784
19418	chr5	-	2717	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	1	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963479	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938152_135938980_135940506_135963176
19419	chr11	+	3872	21	NNC	ENSMUSG00000041164.16	novel	4116	20	NA	NA	3	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	104.758102311945	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTTGGTGGGCTTGGCT	4626	False	NA	NA	False	NA	NA	NA	6339076	6356060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6339141_6345124_6345289_6345567_6345679_6345757_6345873_6346327_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989_6355242_6355288
19421	chr2	-	5498	31	NNC	ENSMUSG00000033526.17	novel	5171	30	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	23.6085907151519	132	81	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGGGGGTGTGACTCCTT	NA	False	NA	NA	False	NA	NA	NA	121185813	121141042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121142964_121147135_121147250_121152199_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
19422	chr2	+	2776	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	11	-3	intron_retention	FALSE	canonical	0	0	junction_15	112.306960184065	1	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTTGTTGTATGCTGT	NA	False	NA	NA	False	NA	NA	NA	130266269	130285651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285191
19424	chr11	-	2747	17	NIC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	-189	-9	combination_of_known_junctions	FALSE	canonical	3	13	junction_16	68.3266225109218	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGATCAACATTTTGTG	6651	False	NA	NA	False	NA	NA	NA	54853932	54801623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
19425	chr13	-	2495	12	NNC	ENSMUSG00000021713.10	novel	2342	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	126.765417501699	5	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATATACGTGTCAAATGA	NA	False	NA	NA	False	NA	NA	NA	104365351	104341632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104360044_104360178_104361857_104361961_104365113
19426	chr3	+	2809	10	ISM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	1813	-914	-1085	-2	3prime_fragment	FALSE	canonical	3	509	junction_5	36.9617753835794	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTCGGCCTCTCAACTCC	NA	False	NA	NA	False	NA	NA	NA	89330747	89337320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
19427	chr16	-	5358	2	NIC	ENSMUSG00000046962.17	novel	397	3	NA	NA	1	-11	intron_retention	FALSE	canonical	3	25	junction_1	0	68	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAACATTTATAATGCAG	NA	False	NA	NA	False	NA	NA	NA	97763820	97749043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_97754294_97763712
19428	chr15	-	3653	12	NIC	ENSMUSG00000022443.18	novel	7433	41	NA	NA	167	-7	intron_retention	FALSE	canonical	3	492	junction_9	42.8254191914758	133	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTACTCTTTGGTGTCTG	6034	False	NA	NA	False	NA	NA	NA	77653812	77644793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704
19429	chr9	+	4652	12	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	-9	-98	intron_retention	FALSE	canonical	3	271	junction_2	30.9400914057853	8	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGCGCTACTCACTGC	NA	False	NA	NA	False	NA	NA	NA	107828177	107849371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107847252_107847667_107847818_107847906
19430	chr9	+	4378	26	NIC	ENSMUSG00000032115.15	novel	4489	26	NA	NA	-14	-10	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	163.052806170271	1	208	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATAGGTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	44290905	44303650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44290974_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
19431	chr11	-	2302	10	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-54	0	intron_retention	FALSE	canonical	1	16	junction_8	304.453041241154	27	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8476	False	NA	NA	False	NA	NA	NA	69572726	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69569111_69569447_69569560_69569647_69569888_69571149_69571677_69572488
19432	chr5	+	1320	1	Antisense	novelGene_ENSMUSG00000100801.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGACCATTCGGTTGTCAA	NA	False	NA	NA	False	NA	NA	NA	5831518	5832838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_5831500_5832800
19433	SIRV7	-	2452	5	FSM	SIRV7A	SIRV701	2462	5	12	-2	7	-1	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	3	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147911	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
19435	chr11	-	2858	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	-332	0	-332	0	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	865	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9878	False	NA	NA	False	NA	NA	NA	116165375	116135991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
19436	chr17	+	6148	14	NIC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	628	-4852	intron_retention	FALSE	canonical	3	368	junction_13	38.9622788296274	8	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTTTGAACTAATCAAG	NA	False	NA	NA	False	NA	NA	NA	29880408	29914448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399
19437	chr8	+	3630	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	-33	-2	-11	2	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	444	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGGAAATGTCGTGGCT	NA	False	NA	NA	False	NA	NA	NA	79235963	79460634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
19438	chr9	+	1338	1	Antisense	novelGene_ENSMUSG00000058922.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCGGCAGCGTCAAAGAGCA	2444	False	NA	NA	False	NA	NA	NA	123517954	123519292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_123518000_123519300
19439	chr10	-	3676	19	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	414	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	148.950453689544	1	132	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGAGTGGTGTTTCCTTGG	NA	False	NA	NA	False	NA	NA	NA	62175907	62104881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127762_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
19440	chr2	+	2572	18	Intergenic	novelGene_2770	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	6	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGCCTCTCCCAGGGGGA	NA	False	NA	NA	False	NA	NA	NA	165629100	165700080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_165629171_165633827_165633892_165634723_165634888_165636314_165636558_165638006_165638082_165639853_165639935_165647106_165647298_165649594_165649850_165670127_165670610_165675228_165675345_165676809_165676890_165679202_165679256_165680730_165680820_165681917_165682013_165684684_165684798_165687940_165688090_165693922_165694069_165699974
19441	chr16	-	2168	20	FSM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	-34	9	-19	-3	multi-exon	FALSE	canonical	0	0	junction_19	120.274616521947	2002	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATCCCCTCTGGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	18630756	18599205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264_18630460_18630553
19442	chr11	+	1522	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-29	multi-exon	FALSE	non_canonical	0	0	junction_2	980	21	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAGTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120654073_120654114
19444	chr7	-	2036	8	Antisense	novelGene_ENSMUSG00000074887.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAAGCACCCGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	42884749	42863451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_42863571_42870264_42870330_42872998_42873132_42873329_42873384_42875133_42876335_42882319_42882480_42882877_42883031_42884598
19445	chr10	+	3129	16	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	12	-13	intron_retention	FALSE	canonical	3	23	junction_3	60.4545743145674	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAAGCCCCAGCCAGCCTG	9127	False	NA	NA	False	NA	NA	NA	41352343	41361054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354311_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980
19446	chr7	-	2747	11	NNC	ENSMUSG00000030726.17	novel	3069	12	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	185.434193179144	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	99770678	99731317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99733062_99737270_99737350_99738858_99738963_99745697_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
19447	chr7	+	2035	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	53	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAACCAGACTTGCTG	375	False	NA	NA	False	NA	NA	NA	44465811	44480223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478417_44478790
19448	chr10	+	2588	11	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	1472	-77	intron_retention	FALSE	canonical	0	0	junction_7	539.208679455366	1	85	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCCACATCTACCCCATC	1155	False	NA	NA	False	NA	NA	NA	79692343	79700116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698241_79698376_79698486_79698704_79698811_79698890_79698978
19450	chr15	+	1779	14	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	285.817275182763	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAATCTTTAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	80832719	80853310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862_80853150_80853215
19451	chrX	-	3049	11	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	881	-19	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	450.749165279316	1	111	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGATTCTGAAACAAGCAT	NA	False	NA	NA	False	NA	NA	NA	93255376	93232331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93233412_93233505_93234529_93239877_93239949_93243375_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324
19452	chr15	+	2221	13	NNC	ENSMUSG00000033047.6	novel	2345	6	NA	NA	-1079	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	675.157939341274	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGTTTGTGGTCTCA	NA	False	NA	NA	False	NA	NA	NA	78958299	78978598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78958666_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966162_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
19453	chr3	-	2506	19	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-4	2	combination_of_known_junctions	FALSE	canonical	1	11	junction_2	176.050576697594	908	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662199	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648339_95648428_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
19455	chr17	+	4590	3	ISM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	16679	-480	-4679	0	3prime_fragment	FALSE	canonical	3	30	junction_2	5	2	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCCAAGTGGCCTACTC	9208	False	NA	NA	False	NA	NA	NA	17188492	17194419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_17191289_17191432_17191494_17192686
19456	chr5	-	3644	5	FSM	ENSMUSG00000058291.15	ENSMUST00000085852.11	3318	5	42	-368	22	368	multi-exon	FALSE	canonical	3	23	junction_3	27.3530162870569	10	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTGTATTCAGCAG	1776	False	NA	NA	False	NA	NA	NA	138617978	138602877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138615316_138615430_138617870
19459	chr4	-	3371	11	NNC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.5519940891991	28	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTGGGAAGAGTGCTCT	-24	True	NA	NA	False	NA	NA	NA	46138455	46114745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_46115183_46115517_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
19461	chr13	-	1808	14	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	-1	-79	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2859.79353746439	3	35	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCATTTGTTCAGAGC	5150	False	NA	NA	False	NA	NA	NA	58549931	58539852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
19463	chr9	+	3148	5	NIC	ENSMUSG00000032092.6	novel	3107	6	NA	NA	-40	-14	intron_retention	FALSE	canonical	3	426	junction_4	60.3013266852397	4	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGTAATAAAGAACTATGA	NA	False	NA	NA	False	NA	NA	NA	44953953	44965299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44954093_44954997_44955662_44958461_44958610_44960949_44961023_44963175
19464	chr10	+	2727	10	NIC	ENSMUSG00000019794.14	novel	1775	11	NA	NA	-41	0	intron_retention	FALSE	canonical	3	353	junction_4	22.572243416185	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCAATTTAGCACC	NA	False	NA	NA	False	NA	NA	NA	7601722	7638914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7636634_7637006_7637134_7638553
19465	chr3	-	1892	8	FSM	ENSMUSG00000027835.12	ENSMUST00000161137.8	1927	8	37	-2	-8	2	multi-exon	FALSE	canonical	3	1188	junction_3	125.646735098117	3687	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGCTATAAGACAATTTA	NA	False	NA	NA	False	NA	NA	NA	75464126	75423794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
19466	chr17	-	3669	10	FSM	ENSMUSG00000023994.14	ENSMUST00000046719.14	3645	10	-22	-2	-22	2	multi-exon	FALSE	canonical	3	12	junction_8	14.7832070227182	169	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGACTGGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	48716815	48693921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
19467	chr2	+	2762	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	-5	-4	combination_of_known_junctions	FALSE	canonical	3	371	junction_1	64.9806278398403	797	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGCAGATTTTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	144398170	144432665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
19468	chr2	+	2340	16	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	561	junction_4	175.60845335259	2	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7225	False	NA	NA	False	NA	NA	NA	29779828	29812551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
19469	chr11	-	1795	8	NNC	ENSMUSG00000062825.16	novel	1189	7	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3162.494843103	158	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACCATTGTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	120239316	120236521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238176_120238317_120238363_120238461_120238702_120238794_120238924_120239250
19470	chr18	+	3046	11	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	-1	-683	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	774.205889928513	1	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAATCAGTCTCATAAAG	492	False	NA	NA	False	NA	NA	NA	61688408	61722449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713524_61720496_61721991_61722281
19472	chr3	-	2400	10	NIC	ENSMUSG00000028114.17	novel	2741	11	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	76.5041756304118	14	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	123179627	123161945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_123163340_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
19473	chr4	+	4218	21	Intergenic	novelGene_2152	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	94	10	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACCCAGGATCCGCGCC	4578	False	NA	NA	False	NA	NA	NA	148090442	148123268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_148091319_148093137_148093266_148093356_148093465_148095103_148095270_148095430_148095587_148097073_148097260_148098131_148098237_148098320_148098487_148098589_148098742_148098956_148099080_148101302_148102474_148103297_148103431_148104174_148104234_148105916_148105984_148107822_148107951_148108565_148108673_148110989_148111060_148113009_148113073_148113843_148113913_148122377_148122435_148123140
19474	chr7	+	2631	8	NIC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	-5	384	intron_retention	FALSE	canonical	3	1130	junction_5	76.2455753149128	38	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGCCTCTTGAGCTGTC	NA	False	NA	NA	False	NA	NA	NA	15832527	15851048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15847115_15847274_15848151_15849127_15849197_15849524_15849576_15850388
19475	chr12	-	2181	3	NNC	ENSMUSG00000041359.15	novel	1299	3	NA	NA	-1	-22	intron_retention	FALSE	non_canonical	0	0	junction_1	973.5	2	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATAAAGCTTTGTAGAAC	NA	False	NA	NA	False	NA	NA	NA	105188966	105183038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183321_105183364_105185089_105188791
19477	chr11	-	718	5	ISM	ENSMUSG00000020321.17	ENSMUST00000125302.2	549	6	542	-158	109	158	3prime_fragment	FALSE	canonical	3	1273	junction_1	73.4268343318708	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21521825	21512737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
19479	chr11	-	1531	4	ISM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	11234	552	-971	-457	3prime_fragment	FALSE	canonical	3	1348	junction_1	80.524668408024	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCTCAGACTCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	21510700	21507243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698
19480	chr4	-	4439	10	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	-4	-6	intron_retention	FALSE	canonical	3	30	junction_9	49.0837027590952	216	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATGTAGCTAAGATCT	5671	False	NA	NA	False	NA	NA	NA	43025760	43017640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025285
19481	chr13	-	3793	12	NIC	ENSMUSG00000041747.4	novel	4120	13	NA	NA	6	-1383	intron_retention	FALSE	canonical	3	368	junction_4	40.335575831838	7	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGAGGTGTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	98399515	98384735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98395798_98395881_98395975_98397306_98397479_98399382
19482	chr5	+	1568	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	212	53	129	-53	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTGATGGGTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	100188055	100216566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
19483	chr5	-	2566	15	NNC	ENSMUSG00000029427.12	novel	4286	14	NA	NA	61	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.672457536385	11	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTACAGAGGTTTAATAAAT	6458	False	NA	NA	False	NA	NA	NA	123859046	123837864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123838868_123839026_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
19484	chr11	+	3956	2	ISM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	9	3174	9	-3174	5prime_fragment	FALSE	canonical	3	249	junction_1	0	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGTTAGCCAGGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	113575281	113582299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_113575538_113578599
19485	chr3	+	3257	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	42	2	-7	-2	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	7	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGTATGCCTTCATAG	NA	False	NA	NA	False	NA	NA	NA	116306760	116343628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
19487	chr8	+	2820	6	NNC	ENSMUSG00000004626.15	novel	1847	19	NA	NA	-805	1	intron_retention	FALSE	non_canonical	0	0	junction_3	161.412019378979	6	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCACCAGGGCTCACCTC	9793	False	NA	NA	False	NA	NA	NA	3686360	3692789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3686575_3687115_3687255_3689507_3690516_3690731_3691207_3691731_3691821_3691894
19488	chr16	-	3202	16	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	-7	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	398.27388677754	1	90	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCATAACTGTATCATTG	8103	False	NA	NA	False	NA	NA	NA	4867734	4831774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4831945_4832291_4833467_4836263_4836389_4836703_4837314_4838130_4838233_4839201_4839292_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
19490	chr2	+	1649	4	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	12285	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	682.117780641046	26	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143769524	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143769591_143780304_143780613_143781871_143781949_143784046
19491	chr1	+	3362	6	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	1270	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.9100754023211	1	93	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	1371	False	NA	NA	False	NA	NA	NA	82318039	82423087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82318512_82320487_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
19493	chr1	+	3138	13	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	4	-528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	367.69088013348	3	101	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTAGTCCTCTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	93406718	93437454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425064_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431192_93433294_93433324_93434684_93434805_93435434
19494	chr6	+	1825	5	ISM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	4600	2	4321	-2	3prime_fragment	FALSE	canonical	3	1209	junction_3	59.8430238206593	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	7264	False	NA	NA	False	NA	NA	NA	122290278	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
19496	chr9	-	3051	12	NNC	ENSMUSG00000032468.12	novel	2820	12	NA	NA	-6809	-11	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	68.1595115025369	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAACTATAGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	99457761	99400867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99457471
19497	chr7	+	2288	8	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	337.565594532744	46	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTAGGGTGTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	43896145	43901735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43896233_43896661_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
19498	chr14	+	2085	11	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	491.412952617246	5	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	NA	False	NA	NA	NA	55777845	55786329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55786001_55786047
19499	chr10	+	3798	25	FSM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	103	-3	70	-1	multi-exon	FALSE	canonical	3	265	junction_7	41.1321548993809	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAGTAGTTTCTATGGTT	NA	False	NA	NA	False	NA	NA	NA	63079792	63153656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
19500	chr9	-	1228	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	5771.15775559809	833	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78387583_78387703_78387792_78387971_78388920
19501	chr7	+	2884	2	NNC	ENSMUSG00000006333.15	novel	1185	2	NA	NA	-1	382	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	65	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTGAACTGAGAAATGAGA	1311	False	NA	NA	False	NA	NA	NA	3707038	3710278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3707448_3707803
19503	chr5	+	3233	10	NIC	ENSMUSG00000029466.12	novel	2751	11	NA	NA	0	-460	intron_retention	FALSE	canonical	3	226	junction_7	30.3498123735734	64	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGAGACTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	122560543	122582515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122579504_122581866
19504	chr12	+	3036	28	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	27	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_27	269.955663686934	1	92	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCTTGGTGTTGAAAC	8053	False	NA	NA	False	NA	NA	NA	76302213	76366572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366412
19505	chr4	+	2680	10	NIC	ENSMUSG00000028249.16	novel	2745	9	NA	NA	0	-171	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	182.74336048806	762	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATGAAATTGTGTTT	4	True	NA	NA	False	NA	NA	NA	6365712	6396113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_6365760_6367639_6367809_6377076_6377143_6378965_6379048_6380989_6381100_6385025_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
19506	chrX	-	1220	1	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	813	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCGAGGCAGGAAGCCCAA	2468	False	NA	NA	False	NA	NA	NA	13070089	13068869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13068900_13070100
19507	chr17	-	2379	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	-102	-1237	-98	0	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	493	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	80514834	80507508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
19508	chr16	+	3654	11	FSM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	140	-5	-42	5	multi-exon	FALSE	canonical	3	116	junction_9	10.1607086367044	158	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATAGTTGGTTTCCTTAT	5291	False	NA	NA	False	NA	NA	NA	37597374	37656881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_37597515_37597655_37597713_37636067_37636173_37639265_37639396_37641517_37641551_37642962_37643094_37647087_37647207_37649068_37649182_37649475_37649587_37651918_37651996_37654243
19509	chr19	-	2110	18	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	366.471173637527	26	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5086	False	NA	NA	False	NA	NA	NA	53027045	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980058_52985340_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
19511	chr3	+	1835	15	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	666.637576321096	6	29	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCGTTGTCATGTGTTT	3844	False	NA	NA	False	NA	NA	NA	88204462	88229072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216535_88216634_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
19512	chrX	-	2336	2	NNC	ENSMUSG00000031119.5	novel	2651	9	NA	NA	111770	2003	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTGGACGCTCGCTG	4056	False	NA	-9	True	NA	NA	NA	51142359	51139894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_51141615_51141743
19513	chr17	-	1997	15	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	688.124933038607	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATAGCTCTGTGCATC	NA	False	NA	NA	False	NA	NA	NA	45906456	45896133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896210_45896262_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
19514	chr2	+	2347	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-18	1	intron_retention	FALSE	canonical	0	0	junction_10	920.810988223456	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116331	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119895_130120075_130120191_130120343
19515	chr8	+	4777	25	NIC	ENSMUSG00000031691.15	novel	4863	25	NA	NA	-1	-14	combination_of_known_splicesites	FALSE	canonical	3	140	junction_1	62.568282144834	275	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTTTCTTGTGAAACAC	NA	False	NA	NA	False	NA	NA	NA	85763542	85784195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85763607_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
19517	chr16	+	3304	16	NNC	ENSMUSG00000022912.9	novel	3303	15	NA	NA	29	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_12	109.648813136405	322	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGAGCAATTTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	62674698	62749707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62740352_62740385_62744878_62745028_62746690_62746917_62748395
19520	chrX	+	1644	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	755.657869889893	133	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357373	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917_139376167_139376475
19521	chr12	-	2433	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-10	-2358	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	684.78883869409	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAAAATAAACTTGACAAC	NA	False	NA	NA	False	NA	NA	NA	13299174	13269331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274018_13275399_13275492_13277305_13277451_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286123_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
19522	chr7	+	3211	5	FSM	ENSMUSG00000045411.17	ENSMUST00000107950.9	3336	5	-4	129	-2	-129	multi-exon	FALSE	canonical	3	709	junction_3	44.6933999601731	1	105	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGTCTGGTCTCCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	43896208	43901607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
19523	chr2	+	2378	7	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1506.83473435764	3	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTAGTGTCTGACTCCTC	NA	False	NA	NA	False	NA	NA	NA	162916661	162926602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162916727_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922935_162924477_162924620_162925085
19524	chr19	-	3813	22	NNC	ENSMUSG00000024999.8	novel	3977	21	NA	NA	45	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.4590526898511	14	87	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTAGTCTTACGAGGT	2333	False	NA	NA	False	NA	NA	NA	38807636	38776572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_38776581_38776698_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
19525	chr8	+	1582	2	Genic_Genomic	ENSMUSG00000071041.5	novel	1545	1	NA	NA	-65	43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAAAAAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100757124	100758777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_100757419_100757489
19526	chr12	+	3296	12	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	12	-16	intron_retention	FALSE	canonical	3	514	junction_10	180.711449828652	10	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGTGTACTTTACTGA	NA	False	NA	NA	False	NA	NA	NA	105976562	106041443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
19527	chrX	-	2072	6	Antisense	novelGene_ENSMUSG00000025261.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCTAGCTGAGCCTAA	NA	False	NA	NA	False	NA	NA	NA	150713214	150706505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_150707757_150710625_150710784_150711146_150711392_150711755_150711877_150712339_150712481_150713058
19528	chrX	+	2465	7	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.6643835080875	109	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	133618704	133622657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619114_133619211_133619474_133619568_133619668_133619742_133620118_133620253_133620375_133620475_133620782
19529	chr1	-	2070	15	NIC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	21	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	516.828653562143	25	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGATAGTGTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	128345075	128291446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_128292063_128294434_128294507_128294657_128294770_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
19531	chr1	+	3267	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	-6	7	-6	-7	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	1015	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGTTTTGTTTTGTT	854	False	NA	NA	False	NA	NA	NA	74545210	74569994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
19532	chr10	-	6456	6	FSM	ENSMUSG00000079685.11	ENSMUST00000177585.9	3815	6	35	-2676	-16	0	multi-exon	FALSE	canonical	3	25	junction_3	15.4324333790883	142	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTGTTCTCTTACTT	NA	False	NA	NA	False	NA	NA	NA	7423603	7390361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_7395698_7396417_7396553_7397380_7397485_7406339_7406616_7406953_7407209_7423253
19533	chr7	-	3493	4	FSM	ENSMUSG00000074166.8	ENSMUST00000098509.5	3411	4	464	-546	1	546	multi-exon	FALSE	canonical	3	38	junction_1	6.97614984548545	197	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCACTTTCTGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	41148850	41127751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_41130924_41131989_41132051_41132256_41132384_41148717
19534	chr6	+	2180	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	106	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	601.039677456947	10	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAACACGCTGGCTTTG	2770	False	NA	NA	False	NA	NA	NA	122285784	122294628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293058_122293361_122293422_122293486
19535	chr6	-	3152	7	NNC	ENSMUSG00000030268.18	novel	1082	6	NA	NA	-320	-1449	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1509.60002980922	9	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCCCATTGCAAGTTGC	8165	False	NA	NA	False	NA	NA	NA	145022230	144962850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144963515_144963713_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
19537	chr11	-	1955	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	77	22	-14	-22	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTCCATTCTTTACTCT	9743	False	NA	NA	False	NA	NA	NA	106890290	106879476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
19538	chr13	-	2148	6	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	15646	-89	intron_retention	FALSE	canonical	0	0	junction_1	942.401315788555	1	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97319157	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313087_97313327_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589
19539	chr5	+	2618	27	NIC	ENSMUSG00000029176.14	novel	3854	28	NA	NA	7	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	92.5564996167302	7	26	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACTCTGTTCCATCCTT	NA	False	NA	NA	False	NA	NA	NA	52991474	53024081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
19541	chr9	+	3444	21	FSM	ENSMUSG00000032612.15	ENSMUST00000194959.6	3436	21	-19	11	-3	-11	multi-exon	FALSE	canonical	3	4	junction_6	159.685973084676	1	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTCTATTCATAAAACTG	NA	False	NA	NA	False	NA	NA	NA	108225092	108269708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
19543	chr4	+	3001	2	Antisense	novelGene_ENSMUSG00000039740.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	320	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGAGCTTCTGCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	47469832	47474313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_47472456_47473935
19544	chr5	+	2846	8	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	1069.354773989	1	106	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493753	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507253_34507416_34508133_34508183_34508551_34509239_34509341
19545	chr5	+	1942	14	Fusion	ENSMUSG00000015804.15_ENSMUSG00000039682.13	novel	2267	13	NA	NA	63	-18	multi-exon	FALSE	non_canonical	0	0	junction_12	716.098568468974	48	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAAAGTTTGGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	45650778	45682922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45680755_45680877_45682494
19546	chr8	-	3577	22	FSM	ENSMUSG00000031537.16	ENSMUST00000033939.13	3580	22	3	0	-1	0	multi-exon	FALSE	canonical	3	43	junction_1	18.670796433355	96	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	NA	False	NA	NA	NA	23196591	23149227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
19547	chr12	+	3557	21	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-5	-121	intron_retention	FALSE	canonical	3	38	junction_2	183.352502028197	1	96	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGCTCCCCAATTCTTT	4050	False	NA	NA	False	NA	NA	NA	83679094	83728673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83722093_83722855_83722955_83724628_83724677_83728276
19548	chr4	+	2514	14	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	10	132	intron_retention	FALSE	canonical	3	774	junction_2	74.269619168008	266	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTCTTTTATTCCTAC	9991	False	NA	NA	False	NA	NA	NA	155954033	155973322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972567_155972640_155972784_155972852_155972983_155973076
19549	chr2	+	1545	1	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	2459	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGTTGTTTTATTCA	NA	False	NA	NA	False	NA	NA	NA	180382525	180384070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180382500_180384100
19550	chr3	-	3015	11	NIC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	-1	-2700	intron_retention	FALSE	canonical	3	466	junction_5	150.607967916708	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTCCTACAAGTAAAGT	NA	False	NA	NA	False	NA	NA	NA	127346997	127333062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340840_127341010_127341196_127346831
19551	chr8	+	2703	13	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	362.576993739108	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387590_107388608_107388663_107390378_107390508_107395973
19552	chr9	-	2445	10	Antisense	novelGene_ENSMUSG00000032042.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGCTACGAGCCTCCG	NA	False	NA	NA	False	NA	NA	NA	35127056	35122453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124580_35124675_35125128_35125228_35125351_35125481_35126327_35126761_35126924_35127003
19553	chr7	+	2056	8	NNC	ENSMUSG00000066979.7	novel	3414	6	NA	NA	20	-6	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	479.67280514951	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCAGTTTTCCAGGTGTG	NA	False	NA	NA	False	NA	NA	NA	131162187	131173615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_131162265_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
19554	chr1	+	2378	12	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	57	-254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	199.286827636504	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAAACGCTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	167177616	167195847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973_167195460_167195605
19555	chrX	+	2254	10	Fusion	ENSMUSG00000067768.13_ENSMUSG00000073125.11	novel	1564	9	NA	NA	0	-1	intron_retention	TRUE	non_canonical	0	0	junction_8	564.546425607909	5	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	NA	NA	NA	72235816	72266058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645_72245776_72245921_72246380_72265901
19557	chr7	-	2174	7	NIC	ENSMUSG00000070436.13	novel	2128	6	NA	NA	0	-33	combination_of_known_junctions	FALSE	canonical	3	14	junction_5	763.880317123624	1838	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002321	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002093_99002173_99002259
19558	chr18	-	2760	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234871.2	2818	14	57	1	-3	-1	multi-exon	FALSE	canonical	3	45	junction_13	91.3749671156418	610	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGAATGCTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	12996440	12888385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
19560	chr3	-	2558	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	41	1586	-26	412	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	1175	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATCTGTTTGTATCTTTG	NA	False	NA	NA	False	NA	NA	NA	10396458	10378601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
19561	chr4	+	2779	25	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	126.197259335886	511	13	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	148642918	148666858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649238_148649675_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
19562	chr6	-	2566	22	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	328.28480942586	1	67	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAAATCTAATTCTTT	3049	False	NA	NA	False	NA	NA	NA	71885733	71857635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860423_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865665_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884738_71884831_71885617
19563	chr2	-	3324	14	NNC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	8013	-9	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_13	46.5577201092917	139	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCTTATGGGGATGTTT	NA	False	NA	NA	False	NA	NA	NA	150502121	150460033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150502032
19564	chr6	+	1166	5	NNC	ENSMUSG00000053119.12	novel	2654	6	NA	NA	0	821	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	174.56302586745	19	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCATTGAGAAATAGCCCA	NA	False	NA	NA	False	NA	NA	NA	71520875	71557624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71556963
19565	chr14	+	2211	10	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	8	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	661.958728339382	1	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGGAAGGCCAAGCCAC	9046	False	NA	NA	False	NA	NA	NA	55777877	55786314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55778108_55779868_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785501_55785593_55785761
19566	chr7	-	2359	16	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	55	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	622.650299570759	1	47	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGATGTCTGCATACTT	NA	False	NA	NA	False	NA	NA	NA	33867945	33840142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857468_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863884_33867847
19567	chr4	+	3683	16	NNC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	-6	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	102.389886653365	29	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTCAAGTTCTGATCTC	NA	False	NA	NA	False	NA	NA	NA	62327027	62345211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454_62341645_62341692_62341989_62343470
19568	chr18	+	2696	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26686	30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	367.069346752686	1	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGACTAACAACAACTTC	6399	False	NA	NA	False	NA	NA	NA	77126217	77240843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237799_77240273
19569	chr4	-	3717	16	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-14	1	intron_retention	FALSE	canonical	3	13	junction_12	265.173603512869	21	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTTGATGGCTGAGGT	NA	False	NA	NA	False	NA	NA	NA	155845564	155825096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155825810_155830485_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155839386_155839500_155840135_155840196_155840517_155840620_155841548_155841626_155845258
19570	chr9	+	4618	16	FSM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	-29	4	-29	-4	multi-exon	FALSE	canonical	3	235	junction_13	22.3632635264971	219	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACTTGAGGTCTATGCTC	4921	False	NA	NA	False	NA	NA	NA	70586249	70687507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_70586542_70610568_70610720_70625939_70626059_70629894_70630054_70647356_70647458_70651132_70651286_70653515_70653609_70655364_70655549_70661443_70661608_70668864_70669049_70673233_70673385_70674153_70674338_70675090_70675200_70676073_70676295_70683654_70683782_70685281
19571	chr11	+	1089	3	Antisense	novelGene_ENSMUSG00002076664.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGTAACTCTTCTCCAAGG	23	False	NA	NA	False	NA	NA	NA	120236531	120237815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120237362_120237464_120237649_120237740
19572	chr15	-	2489	9	Antisense	novelGene_ENSMUSG00000022385.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	198	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAGAAAAAGATTATCA	NA	False	NA	NA	False	NA	NA	NA	85760774	85746263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_85746895_85748305_85748462_85751673_85751801_85752878_85753258_85755708_85755780_85757837_85758076_85759173_85759415_85759731_85759949_85760345
19573	chr11	-	3306	26	NNC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	39.716998879573	12	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGTGTTGCTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	98620238	98595424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604013_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
19574	chr19	-	2891	6	NIC	ENSMUSG00000037916.15	novel	1509	10	NA	NA	1252	-5	intron_retention	FALSE	canonical	3	1369	junction_4	81.8095348966121	3	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCATAGCTTGTCTGGAA	7823	False	NA	NA	False	NA	NA	NA	4061409	4057507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057666_4057769_4058130_4058342_4058510_4058593_4058807_4059343_4061273_4061345
19575	chr4	-	1968	14	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	530.617927152282	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	8803	False	NA	NA	False	NA	NA	NA	129436511	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411232_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
19576	chr2	+	1926	4	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-70	-810	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.7679619016137	174	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAATTTAAAACAATTCA	NA	False	NA	NA	False	NA	NA	NA	176766042	176778017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176766152_176770406_176770448_176776035_176776163_176776368
19577	chr16	+	3090	29	NNC	ENSMUSG00000038084.17	novel	6230	29	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.247230958598	1	67	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	29398229	29470697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404892_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
19578	chr16	+	2477	15	Antisense	novelGene_ENSMUSG00000022538.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	551	9	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTCAGCACGCGAGGCT	NA	False	NA	NA	False	NA	NA	NA	30380186	30406378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_30380680_30383462_30383631_30384237_30384327_30386527_30386653_30387922_30388067_30388146_30388253_30389985_30390354_30392009_30392187_30393362_30393425_30396616_30396816_30399776_30399863_30400872_30400960_30401347_30401473_30404374_30404501_30406256
19579	chr13	+	4205	23	NNC	ENSMUSG00000017756.10	novel	5142	24	NA	NA	27	-852	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	159.747043066828	1	143	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATACAGCTTTGCACAT	NA	False	NA	NA	False	NA	NA	NA	73911884	73964009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936835_73938721_73938900_73940668_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
19580	chr1	-	1148	8	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	251	-11	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	107.409572788139	205	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATATGACTATATCTGTGC	8828	False	NA	NA	False	NA	NA	NA	33660972	33492901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33660914
19581	chrX	+	2796	5	FSM	ENSMUSG00000072964.15	ENSMUST00000180025.8	2812	5	17	-1	15	1	multi-exon	FALSE	canonical	0	0	junction_1	89.3168517134365	415	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGTTTGTGTATAT	NA	False	NA	NA	False	NA	NA	NA	134786616	134791828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134789499
19582	chrX	+	1239	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	-2	3	-2	-3	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059301	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
19583	chr8	+	2964	16	NIC	ENSMUSG00000031889.10	novel	2916	16	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_12	66.0092922751537	391	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	105951818	105979685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105975960_105976095_105976228_105976288_105977350_105977424_105978229
19584	chr1	+	3626	5	NIC	ENSMUSG00000052423.16	novel	2805	6	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	209	junction_1	11.0764389584379	10	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	NA	False	NA	NA	NA	171097907	171104466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
19588	chr6	-	1301	7	Antisense	novelGene_ENSMUSG00000030060.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCTGCTGGACTGCGGG	NA	False	NA	NA	False	NA	NA	NA	87913596	87891648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_87891676_87893642_87893748_87894818_87894963_87898505_87898632_87902611_87902790_87910220_87910415_87913069
19589	chr3	+	2134	21	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-2	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	382.037625764793	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGCTTTACAATAAATGATA	NA	False	NA	NA	False	NA	NA	NA	151916107	151938379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031_151938064_151938319
19591	chr1	+	3498	3	NNC	ENSMUSG00000046062.6	novel	5594	2	NA	NA	88	-1766	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACTGAGCTAAATCCCCA	5856	False	NA	NA	False	NA	NA	NA	133059169	133065755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_133060921_133060961_133061354_133064400
19592	SIRV7	-	2245	6	FSM	SIRV7A	SIRV702	2247	6	0	2	0	1	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	1	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGTGTTAATATGAATCA	NA	False	NA	NA	False	NA	NA	NA	114916	1002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
19593	chr7	-	3987	9	Genic_Genomic	ENSMUSG00000066175.3	novel	1052	1	NA	NA	-23179	-135	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCACACACGCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	126271945	126248529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_126248649_126260222_126261589_126261743_126263177_126264087_126264161_126269801_126269865_126270707_126270838_126270903_126271051_126271207_126271246_126271327
19594	chr13	-	759	6	Antisense	novelGene_ENSMUSG00000078952.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	9.2520268049763	2	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTTCAGGTGGACCAT	NA	False	NA	NA	False	NA	NA	NA	97619075	97595593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_97595665_97596691_97596774_97615652_97615981_97618046_97618132_97618599_97618764_97619046
19595	chr9	+	1599	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1430	-160	intron_retention	FALSE	canonical	0	0	junction_6	6905.90486467921	26	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGGTGACAAACCCTTGT	NA	False	NA	NA	False	NA	NA	NA	64082104	64085788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085182_64085300_64085504
19596	chr1	-	3019	12	NNC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	-22	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	160.680423036247	10	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCCTTATGAGTAAATATA	NA	False	NA	NA	False	NA	NA	NA	36749050	36737198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36738997_36739182_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
19597	chr11	-	3019	16	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	10	0	intron_retention	FALSE	canonical	3	81	junction_15	55.6007194198061	3	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3627	False	NA	NA	False	NA	NA	NA	54846903	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
19598	chr11	-	3125	12	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	184	junction_6	84.974959850846	14	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCTGTAGGCTCCCGAC	NA	False	NA	NA	False	NA	NA	NA	120508737	120500915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120506279_120506674_120506764_120508589
19599	chr19	+	3520	10	FSM	ENSMUSG00000034820.5	ENSMUST00000038379.5	3500	10	-19	-1	-19	1	multi-exon	FALSE	canonical	3	152	junction_5	38.5749230894635	1	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTTATACTGCATTGTA	NA	False	NA	NA	False	NA	NA	NA	10502610	10525018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
19600	chr17	+	2588	7	NIC	ENSMUSG00000002307.17	novel	2673	8	NA	NA	-12	9	intron_retention	FALSE	canonical	3	17	junction_1	235.781501960325	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAAATGTTTTAAGTT	5713	False	NA	NA	False	NA	NA	NA	34128562	34134501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34128671_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34133037_34134316
19601	chr8	-	2313	10	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	-7384	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	252.106679359706	10	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	NA	False	NA	NA	NA	31666176	31649490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31665665
19602	chr9	-	2374	19	NIC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	0	43	intron_retention	FALSE	canonical	3	19	junction_5	394.504115204874	12	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTGGAGCCATGGGACAA	NA	False	NA	NA	False	NA	NA	NA	64080195	64044950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056547_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
19603	chr5	-	3025	18	NIC	ENSMUSG00000029253.13	novel	3192	19	NA	NA	5	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	35.8058973318226	111	19	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTGGCATCTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	86213376	86159887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_86160187_86161278_86161370_86164060_86164216_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
19604	chr9	+	543	1	ISM	ENSMUSG00000032410.14	ENSMUST00000185633.7	10256	42	102489	5	39793	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	28	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGACACTGCTGCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	95939308	95939851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_95939300_95939900
19605	chr7	+	1288	2	Antisense	novelGene_ENSMUSG00000107383.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTTCACCATTCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	116423670	116425088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_116424417_116424546
19606	chr11	-	3476	20	Antisense	novelGene_ENSMUSG00000025579.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	66	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGCGGGGCTCGTCCGCG	NA	False	NA	NA	False	NA	NA	NA	119176272	119158853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_119159047_119160911_119161503_119163693_119163840_119164798_119164963_119165042_119165137_119165465_119165593_119165686_119165791_119165882_119166017_119167666_119167777_119168324_119168441_119168519_119168604_119169089_119169205_119169697_119169832_119171233_119171388_119171936_119172083_119173992_119174141_119174484_119174636_119174881_119175049_119175269_119175424_119175828
19607	chr19	+	2822	8	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	-2	intron_retention	FALSE	canonical	3	251	junction_1	134.434719762236	54	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGTTTGACCTACTGTT	3610	False	NA	NA	False	NA	NA	NA	4198652	4204030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520
19608	chr2	-	3783	6	NIC	ENSMUSG00000026753.6	novel	4115	7	NA	NA	11	-48	combination_of_known_splicesites	FALSE	canonical	1	5	junction_3	174.765442808354	5	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCGGTGTCAATTAATAAA	NA	False	NA	NA	False	NA	NA	NA	39116321	39084413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_39087602_39089674_39089885_39090053_39090134_39096663_39096730_39100969_39101066_39116178
19609	chr1	+	2403	10	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	36	-246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	213.308852762061	7	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177595	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192204_167194995
19610	chr10	-	2289	6	NNC	ENSMUSG00000020078.17	novel	2712	9	NA	NA	5890	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	503.149520520491	2	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAACTTAAGTTTGTAGT	NA	False	NA	NA	False	NA	NA	NA	62316487	62291056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292638_62294702_62294846_62300425_62300518_62304068_62304234_62305679_62305837_62316336
19611	chr9	+	3247	17	NNC	ENSMUSG00000032267.9	novel	4109	24	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	208.193081957591	4	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	NA	False	NA	NA	NA	48896677	48953810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915191_48935334_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
19613	chr8	-	3744	2	FSM	ENSMUSG00000031711.8	ENSMUST00000210958.2	457	2	28	-3315	-3	3315	multi-exon	FALSE	canonical	3	495	junction_1	0	4	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGTGGTAAGCTGCTT	NA	False	NA	NA	False	NA	NA	NA	83500746	83495957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_83499641_83500685
19614	chr19	+	2626	13	NIC	ENSMUSG00000024949.18	novel	1000	8	NA	NA	-22	2	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	380.114776160511	23	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGGTCCGTTTCTTTTCTT	1447	False	NA	NA	False	NA	NA	NA	6414564	6427228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6414737_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
19616	chr7	+	2494	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	751	0	751	0	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	2119	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	12758829	12764962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
19617	chr5	-	2530	9	NIC	ENSMUSG00000023452.20	novel	2491	9	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	339.290965654849	3	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACCGTAGCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	32942983	32893651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32897967_32898134_32899553_32899820_32922116_32922293_32942892
19618	chr4	+	2249	17	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-29	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	185.150909733115	24	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGAACTGTGTTCGCTTT	NA	False	NA	NA	False	NA	NA	NA	124923821	124949170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934770_124934850_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
19619	chr6	+	3095	23	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-15	-2	combination_of_known_junctions	FALSE	canonical	2	36	junction_21	64.6919113060493	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAAAATCATTCATATTC	189	False	NA	NA	False	NA	NA	NA	49372553	49446432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49442402_49442472_49446061
19620	chr1	-	4984	10	FSM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	-8	8	-3	-8	multi-exon	FALSE	canonical	3	35	junction_1	20.4420288428002	120	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGAAGCACCTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	183003057	182867837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
19621	chr11	-	3929	19	FSM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	-109	41	-109	12	multi-exon	FALSE	canonical	3	88	junction_15	16.162847964421	107	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCAAACTTTTAATAAAAGA	NA	False	NA	NA	False	NA	NA	NA	69214710	69190353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515
19622	chrX	+	4179	17	FSM	ENSMUSG00000000838.18	ENSMUST00000088546.12	4409	17	224	6	-37	-6	multi-exon	FALSE	canonical	3	466	junction_14	131.607237049298	396	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAATACTAGTCTGACAG	NA	False	NA	NA	False	NA	NA	NA	67722370	67761563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
19623	chr2	-	3727	32	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.176684695969408	1	128	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTCGCGGGCAGATCCG	NA	False	NA	NA	False	NA	NA	NA	180997818	180961564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964732_180965474_180965536_180970393_180970472_180972585_180972669_180976702_180976770_180977684_180977835_180980844_180980888_180980955_180981028_180982284_180982391_180983333_180983371_180988621_180988698_180988803_180988886_180990965_180991101_180991255_180991397_180991681_180991772_180991916_180991995_180992425_180992504_180992817_180992951_180993037_180993162_180993370_180993491_180993593_180993740_180993826_180993971_180994542_180994641_180995769_180995967_180996143_180996230_180996800_180996911_180997094_180997345_180997441_180997604_180997714
19625	chr9	+	3147	15	NNC	ENSMUSG00000032058.15	novel	3430	15	NA	NA	5	-189	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_14	154.614728553635	4	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATTGTGTAAATGCTTT	21	True	NA	NA	False	NA	NA	NA	50768270	50792542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791198
19626	chr8	+	2789	15	NIC	ENSMUSG00000001909.17	novel	2138	17	NA	NA	0	-2	intron_retention	FALSE	canonical	3	116	junction_1	120.386537317704	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85415911	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85415979_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
19627	chr1	+	2369	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	58	80	-15	-80	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	2	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGCTGTAATGTGGGAAA	NA	False	NA	NA	False	NA	NA	NA	4878103	4916882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
19628	chr6	-	4236	16	NIC	ENSMUSG00000030243.17	novel	3054	16	NA	NA	-10	52	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	49.6315311962959	4	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCACACGTGCTGTACAG	6248	False	NA	NA	False	NA	NA	NA	142332745	142303533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_142305719_142308531_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332587
19633	chr2	-	1630	3	NIC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	1369	junction_2	18.5	10127	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCGCCTGTCCAATTC	NA	False	NA	NA	False	NA	NA	NA	25114669	25112173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25113381_25113945_25114245_25114545
19634	chr1	-	2923	9	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	-15	-981	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.2294265253357	40	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCGTGGTTTCTCATGCT	NA	False	NA	NA	False	NA	NA	NA	171854877	171829507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171829603_171831411_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
19635	chr6	+	2551	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	3	7	0	-7	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	663	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATGGATTCCGGCTT	0	True	NA	NA	False	NA	NA	NA	30738051	30748454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
19636	chr7	-	2669	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	47	189	0	-189	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	114	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCACAGCCCCCCTATAG	9978	False	NA	NA	False	NA	NA	NA	19655038	19637691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
19637	chr16	-	1770	8	NIC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	942.899436280866	25	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	989	False	NA	NA	False	NA	NA	NA	11021160	11010833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11021014
19639	chr2	-	3552	16	NIC	ENSMUSG00000027366.13	novel	5616	15	NA	NA	196	-1922	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	7.10742960257473	13	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCAAAATACAGCTGTTT	8475	False	NA	NA	False	NA	NA	NA	126774959	126734232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755219_126755274_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
19640	chr10	-	3764	9	ISM	ENSMUSG00000019917.11	ENSMUST00000220156.2	1821	10	341	22479	341	14	5prime_fragment	FALSE	canonical	3	43	junction_1	6.39824194603486	123	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAAATGTGTTGAAATT	NA	False	NA	NA	False	NA	NA	NA	59057328	58999927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
19642	chr17	-	1240	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-214	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821662	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
19643	chr8	-	2675	12	NNC	ENSMUSG00000022322.9	novel	2156	13	NA	NA	-18	0	intron_retention	FALSE	canonical	0	0	junction_5	90.1649544349935	613	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	False	NA	NA	False	NA	NA	NA	4829585	4785975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794601_4798704_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
19644	chr8	+	3614	20	NNC	ENSMUSG00000031446.15	novel	3728	20	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	85.5342344512295	306	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTACTAATACATTGG	NA	False	NA	NA	False	NA	NA	NA	13155734	13197940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13155904_13156193_13156310_13165469_13165576_13171678_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
19645	chr15	+	1567	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	6	164	6	-164	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	254	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAAGGGTCATCCAAGCA	NA	False	NA	NA	False	NA	NA	NA	103148886	103153218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
19646	chr15	-	6077	26	FSM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	170	13	170	-13	multi-exon	FALSE	canonical	3	82	junction_10	16.0775122453693	172	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGCCTTGTTTTCTTTT	5	True	NA	NA	False	NA	NA	NA	31531029	31456049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430_31480569_31482643_31482745_31482949_31483070_31485091_31485227_31486069_31486145_31486227_31486297_31486500_31486582_31488937_31488997_31490721_31490774_31492884_31492918_31494216_31494279_31496149_31496340_31498719_31498889_31501061_31501135_31502865_31503010_31505830_31505905_31509871_31509969_31530948
19647	chr11	+	3522	23	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	15	-10	intron_retention	FALSE	non_canonical	0	0	junction_8	35.9253127915896	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGACTTTGGCCTGTGACC	NA	False	NA	NA	False	NA	NA	NA	96941660	96959720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946422_96946677_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
19648	chr2	+	3893	5	NNC	ENSMUSG00000060336.7	novel	2797	4	NA	NA	29	1209	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	10.5948100502085	35	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCGAAGTTTTATCATAT	NA	False	NA	NA	False	NA	NA	NA	150060021	150083854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150060119_150078611_150078739_150078948_150079010_150080162_150080906_150080989
19649	chrX	+	1828	15	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	793.153937371143	14	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539093_20548767
19650	chr15	-	1599	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	139	5	12	-5	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	92	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTTTGTTTCTGGATAC	170	False	NA	NA	False	NA	NA	NA	98832307	98829310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
19651	chr13	-	1468	2	Genic_Genomic	ENSMUSG00000114547.2	novel	1342	1	NA	NA	-102	109	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCTCTTAAGTTTTCCAT	NA	False	NA	NA	False	NA	NA	NA	112731720	112730167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_112730303_112730387
19652	chr12	+	2537	11	NIC	ENSMUSG00000020572.9	novel	411	4	NA	NA	-6	-1743	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	337.935851900919	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGACATCATTTATTAAT	NA	False	NA	NA	False	NA	NA	NA	32870793	32901605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_32870909_32880165_32880253_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
19653	chr11	+	2626	12	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3953	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2799.66357778222	2	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTGGCAATGTAGACTG	NA	False	NA	NA	False	NA	NA	NA	55360559	55391711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360624_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386207_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
19655	chr9	+	3087	19	Intergenic	novelGene_1035	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCACGGAAGACGCGAAA	NA	False	NA	NA	False	NA	NA	NA	53009934	53159362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010566_53028454_53028589_53060801_53060855_53068465_53068633_53071197_53071320_53115358_53115828_53118763_53118857_53120989_53121077_53124535_53124634_53134955_53135047_53136772_53136934_53140422_53140555_53145129_53145242_53145295_53145318_53146562_53146683_53147698_53147857_53149345_53149477_53151774_53151836_53159117
19656	chr18	-	3487	9	NNC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-326	-2	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	63.814060950546	26	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATATGTTGTTACGTCT	NA	False	NA	NA	False	NA	NA	NA	70605906	70585285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600913_70601589_70602519_70602849_70604743_70605051_70605361
19657	chr17	+	1754	5	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	859.41346277563	2	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGAGTTGTGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	29251658	29261867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251666_29257487_29257599_29259748_29259788_29260180_29260268_29260357
19658	chrX	+	2195	6	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1807	0	intron_retention	FALSE	canonical	3	454	junction_1	903.556174236002	14	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74147747	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74147807_74147945_74148067_74149259_74149988_74150777_74150857_74151784_74151911_74152301
19659	chr9	+	2880	14	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	70	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	281.775814198905	1	97	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTGCCTCTTAGGTTCA	5582	False	NA	NA	False	NA	NA	NA	35122520	35128302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122683_35123303_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
19660	chr12	-	1954	13	NIC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	0	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	399.934465117585	127	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGTATATGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	36206765	36141839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36190693_36190842_36206666
19661	chr17	+	3179	16	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	232.489330699043	8	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATTTTTATCTTCGGA	NA	False	NA	NA	False	NA	NA	NA	32255383	32281819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321_32279422_32280781
19662	chr17	+	3365	9	NIC	ENSMUSG00000024188.17	novel	2704	10	NA	NA	-14	-8	intron_retention	FALSE	canonical	3	213	junction_8	130.481559999871	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCTGCTGTCCTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	26471910	26500956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
19663	chr18	+	2674	10	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	250.267905835642	1054	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGTGGCCTGCATATA	NA	False	NA	NA	False	NA	NA	NA	52598764	52625005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_52598858_52604890_52604972_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515_52624796_52624860
19664	chr10	-	2293	11	FSM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	6	-2	6	2	multi-exon	FALSE	canonical	3	645	junction_7	42.5845042239545	2517	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGGTTTTGATGAGATGT	NA	False	NA	NA	False	NA	NA	NA	13068906	13053881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
19665	chrX	-	2051	3	FSM	ENSMUSG00000015290.16	ENSMUST00000126117.2	2220	3	60	109	-2	-109	multi-exon	FALSE	canonical	3	33	junction_2	782.5	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGCTCCATCAAAACCTT	NA	False	NA	NA	False	NA	NA	NA	73412104	73409433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73411193_73411306_73411516_73412021
19666	chr2	-	2034	7	NNC	ENSMUSG00000060703.13	novel	1354	6	NA	NA	315	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	35.1836451904701	5	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	4317	False	NA	NA	False	NA	NA	NA	60114447	60082336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60105058_60105958_60114237
19667	chr5	+	3452	11	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	0	555	intron_retention	FALSE	canonical	2	9	junction_8	308.415369266838	218	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTTGTGGTAAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	31652095	31668758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652228_31652861_31652956_31654654_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31664817_31664909_31666642_31666751_31668175
19668	chr3	+	3476	8	FSM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	-2	0	-2	0	multi-exon	FALSE	canonical	3	56	junction_2	49.6608908662808	5	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGACTCAACCCTTTTTA	8790	False	NA	NA	False	NA	NA	NA	30656790	30672650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
19669	chr12	+	2516	10	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	9	-138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	168.304911425295	18	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTAAAATTAGTACTTGTA	NA	False	NA	NA	False	NA	NA	NA	59113737	59120646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211_59118325_59119087
19670	chr7	-	3334	17	NNC	ENSMUSG00000025474.10	novel	3060	18	NA	NA	111	0	intron_retention	FALSE	non_canonical	0	0	junction_14	120.892498087144	18	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGGCTCAATGATTTC	NA	False	NA	NA	False	NA	NA	NA	139616471	139575867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611103_139612031_139612161_139613525_139613712_139616259
19671	chr17	-	2968	16	ISM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	2003	1051	166	-1051	3prime_fragment	FALSE	canonical	3	709	junction_2	69.1180632444708	1	106	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGATAACAGATCCCCAAT	9236	False	NA	NA	False	NA	NA	NA	24468380	24442222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224
19673	chr6	-	2718	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	19	2	19	-2	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	874	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTCTGTGTTTGTGTAA	2851	False	NA	NA	False	NA	NA	NA	136805212	136790653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
19674	chr1	+	4679	10	NIC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	-20	-20	intron_retention	FALSE	canonical	3	90	junction_5	14.8772757362809	5	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGTTTGGCAAGAAAA	15	False	NA	NA	False	NA	NA	NA	75168774	75176011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75170929_75171484_75171588_75171706_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
19675	chr3	-	3246	11	NIC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	-36	intron_retention	FALSE	canonical	3	948	junction_5	60.2083881199289	6	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTTTTCTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	157630700	157599920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157625750_157626591_157626674_157630502
19676	chr18	+	2739	21	NNC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	27	13	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_5	202.699062652001	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAAGCATAATGCCT	72	False	NA	NA	False	NA	NA	NA	3383337	3435398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418567_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
19677	chr7	-	2372	23	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	418.243397145966	1	58	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGAGGTCTGGTCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	143153793	143111446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138419_143138501_143138535_143139435_143139535_143140151_143140245_143140841_143140931_143142228_143142321_143153718
19678	chr1	+	4451	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	10	72	-8	-72	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	376	107	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTAAAGATGTATATCT	NA	False	NA	NA	False	NA	NA	NA	93731696	93749745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
19679	chr12	+	1596	7	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	45	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2389.29457860125	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGCATACAAGTATTAAAT	NA	False	NA	NA	False	NA	NA	NA	24758284	24764101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758295_24760374_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
19680	chr11	+	959	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	142	346	128	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691328	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
19681	chr6	-	2159	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	-27	333	-19	4	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAGTATATCAATAATA	NA	False	NA	NA	False	NA	NA	NA	97182548	97160963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
19682	chr3	+	2712	6	NNC	ENSMUSG00000046519.16	novel	2221	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	24.5812937006985	2	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGTTCTCTCTGTACA	NA	False	NA	NA	False	NA	NA	NA	95496289	95526552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354_95524975_95525052
19683	chr5	-	2708	5	Intergenic	novelGene_756	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGAGCAGGCGAGCCGCGC	1340	False	NA	NA	False	NA	NA	NA	100216603	100187898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_100188131_100206996_100207099_100208830_100210133_100211615_100211740_100215655
19684	chr5	-	4365	4	NIC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-61	-7	intron_retention	FALSE	canonical	3	1106	junction_3	27.0842307543625	43	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACATGGATTCAGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	129856338	129842628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_129846449_129847669_129847805_129848539_129848697_129856085
19685	chr17	+	4175	18	FSM	ENSMUSG00000000708.15	ENSMUST00000000724.15	4653	18	478	0	478	0	multi-exon	FALSE	canonical	3	180	junction_6	30.0116471047111	322	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGTGTTATGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	53874476	53979748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_53874607_53917891_53918019_53931379_53931526_53936351_53936445_53939564_53939747_53945379_53945572_53948220_53948328_53951641_53951765_53955774_53955912_53960049_53960259_53961466_53961594_53966345_53966457_53967056_53967201_53970562_53970678_53972433_53972471_53972680_53972745_53972850_53972936_53977702
19686	chr18	-	3508	9	NNC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-313	-2	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_6	77.1539653873992	25	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATATGTTGTTACGTCT	NA	False	NA	NA	False	NA	NA	NA	70605893	70585285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70600829_70601589_70602573_70602849_70604743_70605051_70605361
19687	chr8	+	5277	33	FSM	ENSMUSG00000031644.20	ENSMUST00000034065.14	5401	33	115	9	45	-2	multi-exon	FALSE	canonical	3	31	junction_16	13.1719028024618	4	50	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCTGAAGTATATCAGTT	NA	False	NA	NA	False	NA	NA	NA	61446343	61584371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_61446798_61459662_61459811_61460192_61460290_61465126_61465225_61469256_61469341_61472876_61472945_61473069_61473157_61475244_61475300_61481692_61481894_61487058_61487120_61488965_61489118_61496266_61496327_61496948_61497009_61497093_61497142_61497292_61497368_61502817_61502982_61507553_61507657_61525309_61525394_61525788_61525867_61526538_61526635_61539432_61539562_61542471_61542532_61542604_61542834_61551409_61551563_61552913_61553079_61557146_61557268_61558584_61558674_61559828_61560068_61573942_61574095_61577145_61577355_61578029_61578161_61578997_61579131_61583177
19688	chr8	-	2580	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	34	1	-2	-1	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	498	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTGTGACTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	40964761	40945581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
19689	chr5	+	2139	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	335.156139366568	1	44	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815922	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821253_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069_33829130_33829325
19690	chr12	-	3593	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	-15	15	combination_of_known_junctions	FALSE	canonical	3	81	junction_8	18.4936888944748	186	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTGTTCTTATTTGCAAA	NA	False	NA	NA	False	NA	NA	NA	83968679	83840829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
19691	chr13	-	4507	14	FSM	ENSMUSG00000021147.18	ENSMUST00000021572.11	4526	14	19	0	-2	0	multi-exon	FALSE	canonical	3	54	junction_4	12.9902102419544	94	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATTATAAAGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	8921061	8853030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
19692	chr11	-	1607	12	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5300.90481127343	3	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTTTGGGCTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	69563139	69557765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558215_69558371_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561572_69561753_69561803_69563104
19693	chr5	-	2134	12	NIC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	257.739634143188	10	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	92582986	92563398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92575958_92576186_92578659_92578813_92578897_92578982_92579888_92579951_92582862
19694	chr2	-	2392	13	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	46	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	212.134915141808	53	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAATAAAGTGTGTTCGT	NA	False	NA	NA	False	NA	NA	NA	165740890	165669132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676118_165676209_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
19695	chr17	-	3542	9	FSM	ENSMUSG00000023994.14	ENSMUST00000162460.8	3706	9	156	8	0	-1	multi-exon	FALSE	canonical	3	22	junction_4	12.5492778676703	46	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAAAAGTGACTGGATTT	NA	False	NA	NA	False	NA	NA	NA	48716778	48693924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
19696	chr11	-	1871	8	NNC	ENSMUSG00000004393.11	novel	764	6	NA	NA	3	2481	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	351.228340170288	4	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCATTTCAGAGAAGAGGA	4518	False	NA	NA	False	NA	NA	NA	6217743	6212825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6213695_6214707_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
19697	chr11	-	547	2	ISM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	7957	62	6577	-62	3prime_fragment	FALSE	canonical	3	1049	junction_1	0	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACCCTCTGGAATGT	4078	False	NA	NA	False	NA	NA	NA	6209815	6208980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_6209259_6209546
19698	chr7	+	2735	13	NNC	ENSMUSG00000038943.17	novel	3026	14	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	411.64119354387	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACACTGTTTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	79944191	79966003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954223_79954461_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960900_79962779_79962957_79964861
19699	chr4	-	4826	17	ISM	ENSMUSG00000040359.15	ENSMUST00000142949.8	5189	19	177	1549	165	-2	internal_fragment	FALSE	canonical	3	153	junction_3	22.5024304242897	4	88	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGGACTTGTTTGTTAT	264	False	NA	NA	False	NA	NA	NA	25281583	25250148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622
19700	chr8	+	2175	11	Genic_Genomic	ENSMUSG00000110711.2	novel	1782	1	NA	NA	-6679	15806	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCCCTGGGCGTGGCTA	NA	False	NA	NA	False	NA	NA	NA	96590762	96615029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_96590862_96591070_96591877_96593445_96593602_96596100_96596264_96597400_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602502_96604339_96604498_96614844
19701	chr14	-	2541	9	NNC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	7303	17	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_8	215.11435912091	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCACTGAGTCAGGTGTGA	NA	False	NA	NA	False	NA	NA	NA	40681461	40628384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40681380
19703	chr1	+	6258	10	Antisense	novelGene_ENSMUSG00000018199.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGTCGGAGCGAGCCCCG	NA	False	NA	NA	False	NA	NA	NA	143628623	143652753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_143631089_143631422_143633635_143635682_143635826_143636088_143636202_143637004_143637125_143641170_143641308_143641510_143641657_143642325_143642546_143646157_143646763_143652656
19706	chr2	+	2761	18	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	0	-1629	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_9	193.008542758746	1	87	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTCAAATATTACTATC	7222	False	NA	NA	False	NA	NA	NA	23046529	23087643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073301_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
19709	chr11	-	2126	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	112	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6404	False	NA	NA	False	NA	NA	NA	102076074	102053322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054389_102054470_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
19710	chr7	-	4151	6	FSM	ENSMUSG00000010751.16	ENSMUST00000075588.13	4170	6	24	-5	15	3	multi-exon	FALSE	canonical	3	105	junction_4	22.3338308402298	265	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTTGAATTGGCTCAT	NA	False	NA	NA	False	NA	NA	NA	143203374	143188539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143192174_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
19711	chr16	+	3163	16	Intergenic	novelGene_3604	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGGCCACGCCGGAA	NA	False	NA	NA	False	NA	NA	NA	17469090	17540789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_17470128_17470572_17470674_17471055_17471220_17471306_17471470_17471788_17471853_17472874_17472942_17473010_17473146_17473307_17473436_17473541_17473668_17481238_17481361_17489408_17489536_17490930_17491259_17492264_17492549_17503309_17503368_17515469_17515559_17540619
19714	chr10	+	2227	7	Antisense	novelGene_ENSMUSG00000020092.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	32	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGACAAGAGCGGAACAG	NA	False	NA	NA	False	NA	NA	NA	61155442	61178279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_61156818_61156863_61157024_61159003_61159158_61174976_61175114_61176703_61176781_61176989_61177131_61178096
19715	chr10	+	1817	1	Antisense	novelGene_ENSMUSG00000075232.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTCTTCTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	40163461	40165278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_40163500_40165300
19716	chr15	-	4101	22	NIC	ENSMUSG00000000555.9	novel	4382	30	NA	NA	52	-5	intron_retention	FALSE	canonical	3	172	junction_15	17.8245416691225	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTTGCAGTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	103265026	103252717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_103253780_103254378_103254502_103255007_103255110_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967_103260106_103260441_103260597_103260684_103260741_103260910_103261013_103261342_103261389_103261569_103262527_103262694_103262752_103264352_103264397_103264503_103264549_103264742
19717	chr1	+	1932	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	523.528745093119	138	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746178_59748177_59748296_59749653_59749812_59750429
19718	chr16	-	2041	18	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	5	-2347	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	426.849989451575	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGTATTATTTAATATGT	NA	False	NA	NA	False	NA	NA	NA	16176797	16134197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16160560_16160600_16163843_16164010_16176627
19719	chr19	-	1862	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1162.82800946307	2	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883437_15886674_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
19720	chr5	+	4800	5	NIC	ENSMUSG00000037720.17	novel	5322	9	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	175.244650417638	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTTTAGAAATGCTATG	NA	False	NA	NA	False	NA	NA	NA	67418076	67448804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_67418150_67418306_67418377_67441482_67441567_67443438_67443560_67444352
19721	chr8	+	2085	11	ISM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	31235	0	-2029	0	3prime_fragment	FALSE	canonical	3	1237	junction_3	101.385206021392	1	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	472	False	NA	NA	False	NA	NA	NA	120668787	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
19722	chr8	+	2077	15	Antisense	novelGene_ENSMUSG00000031591.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCGCACCCCAACGCGTG	NA	False	NA	NA	False	NA	NA	NA	41793708	41827692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_41793961_41794064_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799230_41799336_41799388_41799966_41800111_41801122_41801166_41802581_41802664_41804932_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
19723	chr2	-	3610	12	NNC	ENSMUSG00000074627.12	novel	1701	4	NA	NA	-36629	-15154	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGTGGCTCCAAGAGCG	NA	False	NA	NA	False	NA	NA	NA	157158098	157121194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157121255_157125502_157125696_157131445_157131542_157132454_157132633_157136072_157136147_157137171_157137307_157139299_157141572_157144316_157144430_157152088_157152212_157154395_157154504_157156690_157156892_157158041
19724	chrX	+	3530	6	NNC	ENSMUSG00000067360.13	novel	3698	5	NA	NA	20	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	71.0025351660066	20	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGTCCATGAGATTCAT	NA	False	NA	NA	False	NA	NA	NA	134203084	134213398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134203188_134203385_134203513_134208081_134208382_134209685_134210271_134210847_134213119_134213254
19725	chr8	-	2791	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	-123	9	-123	-6	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	538	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTACATCCCGGTCTTG	888	False	NA	NA	False	NA	NA	NA	3671439	3660095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
19726	chr7	+	2506	14	NIC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	-453	0	intron_retention	FALSE	canonical	3	3307	junction_6	415.96126640341	1952	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	12759231	12764962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
19728	chr2	-	3931	5	NIC	ENSMUSG00000027109.17	novel	3808	6	NA	NA	-37	-9	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	181.408379078807	360	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAATTTAGCTTGAAAAA	2848	False	NA	NA	False	NA	NA	NA	72810827	72766779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72810593
19729	chrX	+	3379	18	Intergenic	novelGene_3967	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGCGCGGCTCCTAGGCA	NA	False	NA	NA	False	NA	NA	NA	84746214	84820228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_84748001_84749841_84749933_84754657_84754738_84755947_84756092_84756204_84756326_84756879_84756964_84757946_84758048_84759272_84759349_84773806_84773891_84774490_84774530_84780436_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84820031
19730	chr5	-	2409	14	NNC	ENSMUSG00000037936.16	novel	2521	13	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	222.921033063837	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	125418161	125354150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820_125417869_125417983
19732	chr3	-	2537	4	NNC	ENSMUSG00000027944.14	novel	1280	6	NA	NA	-18	2	intron_retention	FALSE	non_canonical	0	0	junction_3	869.433659855017	23	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTAGTCTTGGTTTTGTCA	7249	False	NA	NA	False	NA	NA	NA	89905945	89902757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903425_89903553_89903706_89904124
19733	chr19	+	1403	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	112	-297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3000.53417877962	31	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	955	False	NA	NA	False	NA	NA	NA	8944516	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947259_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
19735	chr4	-	4290	27	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	5	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	398.592473660971	1	215	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAAATCCTGAGAGCAT	231	False	NA	NA	False	NA	NA	NA	41275122	41194333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196525_41196731_41196844_41199493_41199586_41199715_41199895_41201456_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216629_41218310_41218424_41223351_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251549_41251672_41275039
19736	chr18	+	2810	20	FSM	ENSMUSG00000024410.16	ENSMUST00000025276.15	2170	20	2	-642	2	-19	multi-exon	FALSE	canonical	3	252	junction_9	24.4724957266604	483	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTAGGCATTGAAACAAG	NA	False	NA	NA	False	NA	NA	NA	12301775	12323696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
19737	chr8	-	2101	17	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCCCGGCCCCACGTGC	NA	False	NA	NA	False	NA	NA	NA	107649716	107620305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107620343_107621220_107621384_107624691_107624883_107625072_107625159_107627477_107627564_107630857_107631077_107632756_107632927_107633019_107633114_107634836_107634932_107637571_107637637_107638855_107638981_107639979_107640135_107642785_107642893_107644211_107644307_107645248_107645437_107648802_107648935_107649623
19738	chr4	+	1615	1	ISM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	21392	10	2485	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCTTTGCTCTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	130661827	130663442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_130661800_130663400
19739	chr2	-	2230	14	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCAGCCTCCGCTGCCGG	NA	False	NA	NA	False	NA	NA	NA	152122359	152068795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068908_152092317_152092531_152096128_152096236_152099288_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118950_152120884_152121463_152121993
19740	chr14	+	4008	6	FSM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	736	174	-61	-174	multi-exon	FALSE	canonical	3	223	junction_4	16.2357629940819	1	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATGTCTTGTTTTATTT	6338	False	NA	NA	False	NA	NA	NA	31217091	31231641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
19741	chr16	-	2014	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	-3	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975443	45973353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45974512_45974587
19743	chr3	+	2051	14	NNC	ENSMUSG00000027810.15	novel	2299	14	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	216.693031319619	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	58433430	58464922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58433508_58438507_58438578_58444954_58445030_58447007_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
19744	chr10	+	2325	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	280.949129244318	1	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAATTGTGTCATGTGT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872501_21872914_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
19745	chr9	-	3294	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	47	731	0	-731	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	1	80	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTCACAAGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	44679095	44653591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
19746	chr17	-	3004	16	NIC	ENSMUSG00000040688.17	novel	2767	21	NA	NA	5	-195	intron_retention	FALSE	canonical	3	500	junction_10	42.6286288777859	108	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTTCTCATGTGAA	NA	False	NA	NA	False	NA	NA	NA	24926600	24919626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24919760_24919849_24920166_24920253_24920358_24920576_24921022_24921118_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924456_24924538_24924823_24924908_24925005_24925088_24925141_24926497
19747	chr10	+	3540	5	NNC	ENSMUSG00000074781.6	novel	3867	4	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	888.828020485403	61	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGATTTGACTGGTC	NA	False	NA	NA	False	NA	NA	NA	95350984	95381519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133_95378284_95378632
19748	chr19	-	3148	3	FSM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	15	2	15	-2	multi-exon	FALSE	canonical	3	363	junction_1	19	650	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGCAGGATGGTTCTGG	7780	False	NA	NA	False	NA	NA	NA	4861647	4850598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4851834_4852578_4854044_4861199
19749	chr8	+	5386	18	FSM	ENSMUSG00000031540.15	ENSMUST00000044331.7	9113	18	8	3719	8	-3719	multi-exon	FALSE	canonical	2	9	junction_7	4.68894009020697	39	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGTAACCAGCAGCCAC	NA	False	NA	NA	False	NA	NA	NA	23349572	23429556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_23349649_23351532_23351619_23351903_23352818_23393123_23393233_23397661_23397778_23398258_23398341_23400147_23400284_23401675_23401993_23404284_23404404_23409340_23409457_23413530_23413673_23415296_23415459_23416392_23416487_23419231_23419464_23420180_23420395_23422130_23422731_23425495_23425815_23428004
19750	chr13	-	3608	20	NIC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	-8	-3	combination_of_known_splicesites	FALSE	canonical	3	7	junction_14	34.3358836872922	124	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTTCATAGTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	77283600	77191209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
19751	chr17	-	1877	6	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	1	-595	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1096.60687577637	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTTTTGCGTGTGAGTA	NA	False	NA	NA	False	NA	NA	NA	47093581	47085427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47091316_47091478_47092708_47092818_47093544
19752	chr14	-	3327	23	FSM	ENSMUSG00000025557.11	ENSMUST00000088386.8	3121	23	-210	4	-210	-4	multi-exon	FALSE	canonical	3	25	junction_3	5.65119017669934	286	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAGAATATGTGTTTGT	2928	False	NA	NA	False	NA	NA	NA	121742874	121697036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_121698186_121699878_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
19754	chr10	+	3470	13	FSM	ENSMUSG00000020156.17	ENSMUST00000125784.8	3392	13	26	-104	1	101	multi-exon	FALSE	canonical	3	168	junction_1	107.02790394202	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTGACTCCCAGAGCATT	8465	False	NA	NA	False	NA	NA	NA	80062514	80079838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80062539_80064155_80064273_80064828_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
19755	chr10	+	1526	2	FSM	ENSMUSG00000047631.5	ENSMUST00000050901.5	1258	2	-272	4	-272	-2	multi-exon	FALSE	canonical	3	11	junction_1	0	27	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACCCACAGTATTTATCA	201	False	NA	NA	False	NA	NA	NA	128104267	128106018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128104639_128104863
19756	chr15	-	2378	15	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	416	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1560.59396234451	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTCCTTAAACAGTAG	-3	True	NA	NA	False	NA	NA	NA	36608801	36595922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596335_36596802_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
19757	chr2	-	1996	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-4	-380	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	458.89006308701	7	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCATGTATGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	154916371	154901609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902160_154902280_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
19758	chr2	+	1919	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	48	junction_6	931.805559116278	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTATTTTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118574_130118951_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120816
19759	chr15	+	2347	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	104	1	0	-1	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	2351	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99290866	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
19760	chr6	+	4739	12	NIC	ENSMUSG00000071337.12	novel	4326	13	NA	NA	-9	-16	intron_retention	FALSE	canonical	3	27	junction_7	63.1136977444295	7	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATACTTGGAATTTT	9735	False	NA	NA	False	NA	NA	NA	86381254	86409146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86397394_86400587_86400654_86401326_86401403_86401943_86402186_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
19762	chr1	-	2214	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2010.13947233142	2	84	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGAGCCTTCTAAGGACA	NA	False	NA	NA	False	NA	NA	NA	86287098	86278266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278646_86279114_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
19763	chr4	-	2250	10	FSM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	31	4	-11	0	multi-exon	FALSE	canonical	3	372	junction_9	35.0019399815087	1275	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5470	False	NA	NA	False	NA	NA	NA	132073027	132059233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
19764	chr10	-	2439	15	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-2	-1	combination_of_known_splicesites	FALSE	canonical	2	8	junction_6	93.5771263259808	1	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGTTAAGAGTTTTC	8149	False	NA	NA	False	NA	NA	NA	62486954	62451794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
19765	chr3	+	2619	7	NNC	ENSMUSG00000027601.14	novel	2953	8	NA	NA	-11548	-40	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	424.630035050121	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTAAGCTGTTGAATT	NA	False	NA	NA	False	NA	NA	NA	19254187	19274941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271460_19271588_19272325_19272486_19273201
19766	chr15	+	2521	16	Antisense	novelGene_ENSMUSG00000075511.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACGTAGGCTCTGAAAACT	NA	False	NA	NA	False	NA	NA	NA	83183960	83242198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83184903_83187302_83187432_83191087_83191173_83192253_83192377_83194449_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208355_83211805_83211864_83214717_83214817_83216892_83216971_83218678_83218811_83220854_83220926_83227220_83227339_83242111
19768	chr5	-	6040	10	Antisense	novelGene_ENSMUSG00000041147.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCAGGCAACTAGGGTGA	NA	False	NA	NA	False	NA	NA	NA	150466225	150450457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_150450577_150452934_150453167_150454537_150454641_150455146_150455197_150455517_150455559_150455753_150455866_150458055_150458108_150458903_150459014_150459493_150460601_150462111
19769	chr4	-	2062	7	NIC	ENSMUSG00000028693.16	novel	1461	13	NA	NA	504	-11	intron_retention	FALSE	canonical	3	1005	junction_5	137.019057879633	3	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATTTTAACAAAGCCCTT	1271	False	NA	-19	True	NA	NA	NA	116462941	116458259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116462012_116462105_116462192_116462880
19771	chr9	-	2250	12	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	76.1088824216403	30	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAACAGCCAGCTAACAAA	NA	False	NA	NA	False	NA	NA	NA	13738407	13719097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719756_13720024_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
19772	chr17	-	2358	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	1	-1	intron_retention	FALSE	canonical	3	50	junction_12	700.728690881751	2	52	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGTGCATCCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	45906495	45896126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903450_45904257_45904359_45906407
19773	chr1	-	6448	11	FSM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	10	34	10	-34	multi-exon	FALSE	canonical	3	66	junction_1	7.25534285888682	139	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGAATAAAGGGCACAGA	NA	False	NA	NA	False	NA	NA	NA	21149443	21066556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449_21074555_21075790_21075862_21076373_21076459_21077076_21077136_21083016_21083134_21083625_21083736_21107620_21107685_21149217
19774	chrX	-	3846	13	Intergenic	novelGene_3982	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	158	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTTGCGCTGCTCGCTCCT	NA	False	NA	NA	False	NA	NA	NA	95212159	95139643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_95139849_95185469_95185557_95194228_95194320_95196127_95196394_95197889_95197980_95199064_95199215_95201450_95201545_95203685_95203857_95206971_95207099_95207352_95207518_95208982_95209072_95209528_95209754_95210073
19776	chr2	+	3360	6	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	-30	-3	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	102.721760109531	70	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACGTGACGTAAAGGTAG	NA	False	NA	NA	False	NA	NA	NA	172212570	172224365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
19777	chr8	-	3048	18	NNC	ENSMUSG00000002885.15	novel	3000	20	NA	NA	1	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	69.5263261980818	1	63	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTTTGGAACAATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84467811	84449873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455076_84455973_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
19778	chr4	+	2632	19	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	0	-3	intron_retention	FALSE	canonical	1	1	junction_13	159.586580084949	2	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTCTAACTTGCCTCG	3962	False	NA	NA	False	NA	NA	NA	155709325	155734392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732681_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
19779	chr1	+	2300	10	NIC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_4	180.258730375378	4	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	8197	False	NA	NA	False	NA	NA	NA	134333744	134339474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334598_134334705_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
19780	chr1	+	2630	13	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	4	-808	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	667.523839565965	1	82	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTAGGTTTTATAGAT	895	False	NA	NA	False	NA	NA	NA	58432294	58445704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437016_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193_58445215_58445418
19781	chr1	-	486	1	Genic_Genomic	ENSMUSG00000101711.2	novel	NA	NA	NA	NA	-237	-4971	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCTCAGCTCACTCGGC	1909	False	NA	NA	False	NA	NA	NA	34484048	34483562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_34483600_34484000
19783	chr9	-	3433	21	Fusion	ENSMUSG00000097665.2_ENSMUSG00000110915.2	novel	1986	5	NA	NA	6366	-685	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCCTTCAGGCGCCGCCG	5023	False	NA	NA	False	NA	NA	NA	21316650	21279376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_21279398_21279902_21280012_21298995_21299090_21299817_21300058_21300612_21300780_21303590_21303733_21304996_21305097_21305488_21305584_21306123_21306236_21306663_21306763_21307313_21307425_21307509_21307621_21308762_21308963_21309262_21309428_21310418_21310545_21310709_21310889_21310984_21311135_21311252_21311310_21314431_21314798_21315355_21315487_21315992
19784	chr18	+	1596	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-89	-152	-89	152	mono-exon	FALSE	NA	NA	NA	NA	NA	6	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	82356497	82358093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
19786	chr2	+	420	1	Intergenic	novelGene_2573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAACCCCAGAGTTAACTT	9568	False	NA	NA	False	NA	NA	NA	18182275	18182695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_18182300_18182700
19788	chr11	-	2077	7	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	-94	0	intron_retention	FALSE	canonical	0	0	junction_2	5112.34472461838	38	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69561803	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558938_69559021_69559083_69559230_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753
19789	chr10	+	1878	11	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	19	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	402.794736807719	7	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAGATCTGGCCTTGTGT	7009	False	NA	NA	False	NA	NA	NA	60113468	60138372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135330_60137472_60137657_60137767
19791	chr4	-	2901	2	NNC	ENSMUSG00000054428.13	novel	1014	2	NA	NA	8	-2	intron_retention	FALSE	canonical	0	0	junction_1	0	149	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGATGCCTTCTACTGT	9313	False	NA	NA	False	NA	NA	NA	132260898	132257867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132259766_132259895
19793	chr17	+	1731	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	109	4021	66	497	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAGTTTTTAGAGACACAG	NA	False	NA	NA	False	NA	NA	NA	13226812	13235000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
19794	chr16	+	2996	17	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	16	80	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	48.2833029498811	30	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTTCAGAAAAACGTGAT	6417	False	NA	NA	False	NA	NA	NA	44167792	44207586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_44167870_44175802_44175899_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
19795	chr9	+	2125	10	NIC	ENSMUSG00000001774.9	novel	5789	11	NA	NA	-3	1987	combination_of_known_splicesites	FALSE	canonical	2	32	junction_1	286.133397190287	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTTTCTGTCATGTGTT	8537	False	NA	NA	False	NA	NA	NA	18203592	18225296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_18203757_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
19796	chr14	-	4427	10	NNC	ENSMUSG00000022003.8	novel	3588	10	NA	NA	10	-3	intron_retention	FALSE	canonical	0	0	junction_8	14.4050745516816	2	94	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATATGGCTTACAGTC	NA	False	NA	NA	False	NA	NA	NA	76024435	75997559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76013551_76014567_76024364
19797	chr8	-	1910	14	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	29	-332	intron_retention	FALSE	non_canonical	0	0	junction_8	930.438275553722	3	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGCAGTACACTTTGA	NA	False	NA	NA	False	NA	NA	NA	26337693	26307345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318885_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26330104_26337606
19798	chr7	-	2035	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	-27	0	-20	0	multi-exon	FALSE	canonical	3	790	junction_6	144.155948541848	1990	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	NA	False	NA	NA	NA	78798828	78783515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
19799	chr12	-	2404	24	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	28	-2331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	711.750867078073	3	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGAAGGCTTGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	13299136	13269304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286135_13287213_13287348_13289383_13289558_13290555_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
19800	chr1	+	2876	14	NNC	ENSMUSG00000026554.16	novel	2859	14	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	184.339986897121	1	90	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATCAAGTTAAAATTATT	NA	False	NA	NA	False	NA	NA	NA	171975731	172023035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003178_172007468_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
19801	chr11	+	2301	13	NNC	ENSMUSG00000018932.10	novel	2198	12	NA	NA	8	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	157.210116828827	17	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATCGTGTGAGACT	NA	False	NA	NA	False	NA	NA	NA	60822899	60843614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60823098_60824359_60824527_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
19802	chr5	-	2342	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	731.794722108682	1	89	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	2317	False	NA	-92	True	NA	NA	NA	138170083	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164167_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168653_138169987
19803	chr14	-	2611	8	NNC	ENSMUSG00000068245.15	novel	1281	8	NA	NA	-5074	-8	intron_retention	FALSE	canonical	3	27	junction_1	121.308175608191	2	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTTAATCCATGTTGCAT	NA	False	NA	NA	False	NA	NA	NA	59607993	59584863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
19804	chr6	-	2407	18	NNC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	212	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	220.069476289793	1	31	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTCAAGTCTCTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	97182308	97160771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97165817_97165887_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266
19805	chr16	+	3124	17	Intergenic	novelGene_3601	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	20	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGCCAGTCGGTCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	17469079	17540653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_17470128_17470572_17470674_17471055_17471220_17471306_17471470_17471788_17471853_17472874_17472942_17473010_17473146_17473307_17473446_17473551_17473668_17481238_17481361_17489408_17489536_17490930_17491259_17492264_17492549_17503309_17503368_17515469_17515557_17524259_17524347_17540618
19808	chr6	-	2701	10	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	3	-21	intron_retention	FALSE	non_canonical	0	0	junction_3	332.288696433956	2	94	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGCTAGGTTCTAC	NA	False	NA	NA	False	NA	NA	NA	72416536	72409803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72411379_72411963_72412098_72412188_72412339_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328_72416446_72416488
19809	chr15	+	1555	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	430	-3	0	3	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	7	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	98928201	98935994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
19810	chr9	+	2345	8	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	151.266085331209	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCTTGTGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	20927280	20940106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066_20939564_20939746
19811	chr7	+	2632	5	NIC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-6	-8	intron_retention	FALSE	canonical	3	6204	junction_3	166.322540565012	5	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAAAATCAGGCATGCT	NA	False	NA	NA	False	NA	NA	NA	142606524	142621645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_142606804_142616229_142616345_142618945_142620500_142620883_142620971_142621048
19812	chr9	-	352	4	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	54	-81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5151.32722919271	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACCATACAGTCAGAAGAG	7154	False	NA	NA	False	NA	NA	NA	78388952	78387277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78387334_78387616_78387703_78387792_78387971_78388920
19813	chr4	-	2642	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-15	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	138.925461851373	1	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGCCTGGGAACACATT	NA	False	NA	NA	False	NA	NA	NA	115980902	115954151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968420_115969692_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
19814	chr10	+	3697	6	NNC	ENSMUSG00000019808.9	novel	1466	6	NA	NA	315	1556	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	285.454304574305	20	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGACTCTGCCATTTGAG	NA	False	NA	NA	False	NA	NA	NA	13428952	13440676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_13429106_13432595_13432701_13435857_13436980_13437428_13437555_13438380_13438454_13438558
19815	chr16	-	1772	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	19	112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1256.7218369672	2	37	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCGTCTGTTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	87292728	87280763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283162_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
19816	chr13	+	3812	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-1	-195	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	121.425903332032	1	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATTTCTCCAAGGACTA	NA	False	NA	NA	False	NA	NA	NA	76328542	76338030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_76330526_76330933_76331065_76333245_76333370_76335718_76335814_76336551
19817	chr7	-	277	3	FSM	ENSMUSG00000002985.17	ENSMUST00000174710.2	514	3	-2	239	0	-223	multi-exon	FALSE	canonical	3	8700	junction_2	860.5	27	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGTCCAGCTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	19432977	19431403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19431573_19432112_19432179_19432935
19818	chr7	-	3966	5	FSM	ENSMUSG00000048012.20	ENSMUST00000140599.9	1006	5	7	-2967	7	-1	multi-exon	FALSE	canonical	3	48	junction_2	7.63216876123687	188	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTAATGTTCACTGGCTAT	NA	False	NA	NA	False	NA	NA	NA	44397766	44380915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397333
19819	chr11	+	4483	24	NNC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	-31	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	79.0320936939443	1	170	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCAAGCTGTTTATTG	947	False	NA	NA	False	NA	NA	NA	101443652	101472772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444815_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467127_101467236_101468019_101468078_101468757_101468872_101471410
19820	chrX	-	2325	4	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	-14	-1	intron_retention	FALSE	canonical	3	11043	junction_3	2505.1954459128	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232956	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101230174_101230960_101231978_101232903
19821	chr2	+	5931	34	NNC	ENSMUSG00000057110.16	novel	5970	34	NA	NA	-24	2	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	20.7397623189571	93	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCATCCGCAGGTTA	NA	False	NA	NA	False	NA	NA	NA	35022221	35068825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_35022369_35023969_35024124_35025479_35025701_35027643_35027821_35030498_35030634_35033661_35033808_35034225_35034434_35035068_35035249_35037243_35037424_35038502_35038620_35038882_35039028_35039457_35039607_35041691_35041882_35043168_35043486_35045262_35045472_35047607_35047801_35050259_35050391_35050532_35050674_35050802_35050930_35051940_35052106_35052772_35052933_35055458_35055575_35055659_35055878_35057742_35057901_35059253_35059328_35060470_35060660_35061032_35061259_35061849_35062056_35063028_35063170_35065120_35065385_35065549_35065613_35066139_35066335_35068050_35068123_35068408
19823	chr2	-	2983	18	FSM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	161	3207	-55	420	multi-exon	FALSE	canonical	3	27	junction_16	36.6501273382513	237	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	71197932	71104613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71174233_71174377_71196870_71196925_71197856
19824	chr8	+	2150	5	FSM	ENSMUSG00000008450.9	ENSMUST00000212042.2	645	5	-95	-1410	-95	1059	multi-exon	FALSE	canonical	3	273	junction_1	1472.58692442925	123	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTTTGTAAACTATGGT	NA	False	NA	NA	False	NA	NA	NA	106587519	106607021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106587789_106602165_106602291_106602985_106603058_106603141_106603241_106605436
19825	chr18	-	3244	4	NIC	ENSMUSG00000047989.12	novel	2498	5	NA	NA	8	-6	intron_retention	FALSE	canonical	3	634	junction_2	63.5941995957353	10	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTTTGTTGGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	24254884	24237819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_24239716_24244771_24245830_24247133_24247245_24254705
19826	chr10	-	3844	9	NIC	ENSMUSG00000019961.18	novel	3533	9	NA	NA	-407	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_8	258.972458719069	438	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTGTTGAATACATG	NA	False	NA	NA	False	NA	NA	NA	91017584	90983432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139_90989260_90994609_90994708_90999904_91000064_91001804_91001932_91016728
19827	chr8	+	2280	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	-25	12	-25	-12	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	776	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCAGCATGATCTGCTC	NA	False	NA	NA	False	NA	NA	NA	75760307	75796737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
19830	chr1	-	2096	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2585.61521183424	26	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACTTAATACTTCCTAGA	NA	False	NA	NA	False	NA	NA	NA	86287098	86278213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278611_86278672_86278696_86279977_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
19831	chr4	+	2972	3	NNC	ENSMUSG00000097620.8	novel	2114	3	NA	NA	-2562	686	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	69	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCCTGCTGACAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	140840408	140846084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140843175_140845836_140845961_140846002
19832	chr5	+	2398	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	-28	-1	-28	1	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	1217	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAAGGTTTATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	64250264	64285695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
19833	chr8	-	513	1	Intergenic	novelGene_1600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAAAAGCAAGTTGGGGA	NA	False	NA	3	True	NA	NA	NA	23149224	23148711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_23148700_23149200
19834	chr4	-	2079	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	0	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	209.665829357099	38	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147726965	147696396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697507_147698013_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
19836	chr11	-	3107	10	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	294	1	intron_retention	FALSE	canonical	3	46	junction_8	161.369677571427	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTATCTTCCCAGGCTC	NA	False	NA	NA	False	NA	NA	NA	6575165	6566421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815
19837	chr1	-	3252	14	FSM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	15	6	-10	2	multi-exon	FALSE	canonical	3	106	junction_9	14.7515920312223	275	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAATGTGGAATTTTAAA	648	False	NA	NA	False	NA	NA	NA	150268816	150237061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
19838	chr14	+	1790	8	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1241	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	99	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729906	63746217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63730296_63731190_63731897_63733168_63733345_63733441_63733588_63734392_63734467_63735048_63735088_63737568_63737769_63746157
19840	chr19	+	2393	9	FSM	ENSMUSG00000024989.16	ENSMUST00000096096.12	2366	9	-28	1	1	-1	multi-exon	FALSE	canonical	3	10	junction_1	113.762636660724	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTGTCTAGTATGTG	NA	False	NA	NA	False	NA	NA	NA	38043459	38062868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_38043530_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
19841	chrX	+	3489	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	82	8	82	-8	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	123	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAACTAAGTCGCATTT	NA	False	NA	NA	False	NA	NA	NA	7563451	7576493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
19842	chr15	+	2141	14	NNC	ENSMUSG00000022471.15	novel	2114	13	NA	NA	-25	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	230.943370194267	732	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACTGTGCACTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	81900636	81924283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81900677_81901310_81901400_81903181_81903295_81904388_81904486_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
19843	chr1	+	2704	14	FSM	ENSMUSG00000033793.13	ENSMUST00000044369.13	2049	14	17	-672	-13	672	multi-exon	FALSE	canonical	3	428	junction_7	59.3277926628703	944	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACTTTGTATATTTTAT	NA	False	NA	NA	False	NA	NA	NA	5153319	5233424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
19844	chr5	-	2237	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	-11	-541	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	1324	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4353	False	NA	NA	False	NA	NA	NA	123887445	123866488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
19845	chr2	-	3629	2	FSM	ENSMUSG00000079043.4	ENSMUST00000110262.3	3015	2	10	-624	10	624	multi-exon	FALSE	canonical	3	43	junction_1	0	115	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGACAAGAAGCTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	130471937	130455135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130458663_130471835
19846	chr7	+	3589	12	FSM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	39	-4	-19	4	multi-exon	FALSE	canonical	3	293	junction_1	17.146910185967	676	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAAAGTTGGTTGTTGT	6849	False	NA	NA	False	NA	NA	NA	140711237	140737523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
19847	chr3	+	2785	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	16	26	13	0	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAATGTTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	96465288	96469173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
19848	chr3	-	4455	22	NNC	ENSMUSG00000033222.17	novel	4541	23	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	59.4258241123215	1	26	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	100876976	100846175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100876744_100876852_100876935
19852	chr15	-	2878	16	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	27	345	intron_retention	FALSE	canonical	0	0	junction_12	824.052409336526	2	97	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	NA	False	NA	NA	False	NA	NA	NA	11399724	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11393242_11393367_11394309_11394501_11397266_11397348_11399571
19854	chr17	+	2645	11	FSM	ENSMUSG00000024301.11	ENSMUST00000078961.6	2631	11	-21	7	-21	-7	multi-exon	FALSE	canonical	3	91	junction_5	121.140785865042	975	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAAATGTCCATTGTGAT	NA	False	NA	NA	False	NA	NA	NA	27136043	27151550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27136260_27139770_27139906_27139993_27140094_27140780_27140835_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
19855	chr7	+	1882	13	NIC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	6	-46	intron_retention	FALSE	canonical	3	1087	junction_8	74.9345547794874	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGCCTGGATTTTGCCC	NA	False	NA	NA	False	NA	NA	NA	120234468	120258701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_120234546_120236884_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
19856	chr13	+	2226	18	ISM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	12	11394	4	-1535	5prime_fragment	FALSE	canonical	3	407	junction_1	140.151993617212	35	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTTCCTCTGTAATAAT	NA	False	NA	NA	False	NA	NA	NA	6598198	6619157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934
19857	chr11	+	2091	11	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	510.673565009978	3705	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4823997	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838420_4838632_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
19858	chr5	-	5540	16	FSM	ENSMUSG00000043733.15	ENSMUST00000100770.9	5599	16	25	34	-5	-26	multi-exon	TRUE	canonical	3	69	junction_6	9.90263713473448	180	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAGAATAAAATCATTTT	877	False	NA	NA	False	NA	NA	NA	121329435	121268629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121272210_121272798_121272890_121275479_121275593_121281065_121281218_121281624_121281693_121282592_121282748_121287165_121287298_121290274_121290434_121290537_121290618_121292492_121292590_121300771_121300886_121301200_121301318_121302557_121302751_121305911_121306107_121310043_121310167_121329264
19859	chr15	+	1854	13	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	19	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	361.936794282587	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGACTGGGACCCTTGAT	NA	False	NA	NA	False	NA	NA	NA	85220464	85347409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220519_85220578_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
19860	chr5	+	3350	14	FSM	ENSMUSG00000042328.14	ENSMUST00000112359.9	3345	14	-11	6	-11	-6	multi-exon	TRUE	canonical	3	34	junction_1	19.6098031274724	232	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGTTCTGAGTGATCAG	NA	False	NA	NA	False	NA	NA	NA	112490937	112526274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_112491030_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
19861	chr10	-	3291	26	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2462	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	397.864411074929	9	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTCTTTTCCGGAGTTA	9389	False	NA	NA	False	NA	NA	NA	121464699	121425524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121425558_121425919_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449238_121449379_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
19862	chr15	-	1296	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	-43	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4701.41214822738	29	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTCCATGATGTCTCAA	158	False	NA	NA	False	NA	NA	NA	98832319	98829348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829840_98830116_98830444_98830572_98830722_98830853_98831077_98832213
19863	chr10	+	3828	5	NNC	ENSMUSG00000094076.8	novel	4725	4	NA	NA	18	-678	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	20.8851023459307	175	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTACATATTGTAAAACG	4211	False	NA	NA	False	NA	NA	NA	81648037	81661646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81648118_81656960_81657088_81657287_81657349_81657885_81659472_81659672
19864	chr2	+	2082	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	729.993842439784	2	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116948_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119891_130120075_130120211_130120816
19865	chr11	-	2983	10	NNC	ENSMUSG00000025162.19	novel	3500	10	NA	NA	4	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.802075719226	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTTTGTGTGGTCTTTCT	1018	False	NA	NA	False	NA	NA	NA	120881914	120852567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120853165_120853621_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
19866	chr10	+	721	4	ISM	ENSMUSG00000054708.18	ENSMUST00000154707.8	4635	18	10140	33	40	-33	3prime_fragment	FALSE	canonical	3	46	junction_1	24.7521042876493	267	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAATAAATGTAAGTGCAAT	NA	False	NA	NA	False	NA	NA	NA	81479676	81483408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81479728_81482138_81482268_81482626_81482693_81482933
19867	chr5	+	3805	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	-10	0	intron_retention	FALSE	canonical	3	284	junction_12	29.0684059112677	174	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7217	False	NA	NA	False	NA	NA	NA	31609849	31639098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
19869	chr1	-	2587	3	NIC	ENSMUSG00000043716.14	novel	838	6	NA	NA	0	3	intron_retention	FALSE	canonical	3	6646	junction_1	291	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAAATGTGTCGGAGTC	NA	False	NA	NA	False	NA	NA	NA	16174626	16171526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16173054_16173391_16173559_16173733
19870	chrX	+	2441	5	FSM	ENSMUSG00000042271.14	ENSMUST00000042329.12	2447	5	3	3	3	-3	multi-exon	FALSE	canonical	3	12	junction_1	115.070358911407	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTTTCTCAAGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	141010935	141022685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_141011010_141011286_141011378_141012519_141012607_141019779_141019925_141020641
19871	chr1	-	3824	26	NNC	ENSMUSG00000042699.12	novel	4616	28	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	39.3402389418265	19	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGTGTCATTGATGTT	NA	False	NA	NA	False	NA	NA	NA	153363397	153331505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_153332156_153334125_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
19872	chr6	+	1155	4	Antisense	novelGene_ENSMUSG00000005667.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGCAAAGATAAATAACAATA	5569	False	NA	NA	False	NA	NA	NA	83282964	83287502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_83283791_83285913_83286044_83286446_83286533_83287389
19873	chr11	+	1920	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-33	186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1435.14767604975	3	39	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940592	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945976_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
19874	chr10	+	3239	29	NNC	ENSMUSG00000100548.2	novel	425	4	NA	NA	-12013	-2521	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	93	14	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGCGGAGAAGAGACAGAA	8280	False	NA	NA	False	NA	NA	NA	128346118	128358984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128346527_128346846_128346896_128347331_128347439_128347521_128347655_128347736_128347839_128347928_128348088_128348195_128348336_128351556_128351644_128351735_128351806_128352013_128352107_128352224_128352320_128352403_128352453_128352546_128352631_128352824_128353006_128353122_128353265_128353483_128353628_128354789_128354883_128355009_128355085_128355298_128355388_128355462_128355555_128355657_128355707_128356141_128356223_128356510_128356689_128356774_128356900_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942
19875	chr5	-	3550	31	FSM	ENSMUSG00000023079.15	ENSMUST00000073161.12	3572	31	17	5	3	-3	multi-exon	FALSE	canonical	3	65	junction_9	54.133743840808	148	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACAAAAGCGTCACTTT	NA	False	NA	NA	False	NA	NA	NA	134485525	134386519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
19876	chr7	-	3628	9	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	-4	1661	intron_retention	FALSE	canonical	3	1616	junction_3	186.930301182018	3	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGCATGCCCGAAATCC	NA	False	NA	NA	False	NA	NA	NA	79765056	79742932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79744952_79745368_79745462_79745546_79745884_79747551_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
19877	chr2	-	3386	17	NIC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	-1	-3	combination_of_known_splicesites	FALSE	canonical	2	20	junction_16	98.3462473864661	6	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTCAGTGGCCGCTCT	NA	False	NA	NA	False	NA	NA	NA	155953880	155913769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953825
19878	chr17	+	1471	3	Antisense	novelGene_ENSMUSG00000047407.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTTGGAATTCAAGTGACA	9837	False	NA	NA	False	NA	NA	NA	71151215	71158058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_71152266_71153164_71153392_71157864
19879	chr2	+	3432	12	FSM	ENSMUSG00000038696.15	ENSMUST00000147337.8	3111	12	-321	0	0	0	multi-exon	FALSE	canonical	3	190	junction_6	16.5988150527989	196	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTGTATATTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	34296873	34514961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34297267_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
19880	chr9	-	1483	6	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1345	6	120	-6	3prime_fragment	FALSE	canonical	3	11573	junction_3	1608.66794584837	8	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGTGTTGGTCAATGCT	8445	False	NA	NA	False	NA	NA	NA	78387661	78385736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522
19883	chr3	+	2596	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	5	2880	5	-74	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	1	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATCTTGGCCTCTTGAT	NA	False	NA	NA	False	NA	NA	NA	41510170	41568419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
19884	chr7	-	1926	9	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	-70608	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	403.974144438725	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTCGTGTTCTCCACTG	NA	False	NA	NA	False	NA	NA	NA	78869416	78783537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78869317
19885	chr3	+	1871	8	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	23	-2	intron_retention	FALSE	non_canonical	0	0	junction_7	1799.22883707528	120	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATATGAACCACAGGCTG	NA	False	NA	NA	False	NA	NA	NA	121220168	121251846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730_121251351_121251495
19886	chr19	-	2598	17	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.632008187933	4	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCACAGTTCGTTTTC	NA	False	NA	NA	False	NA	NA	NA	40576842	40538702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539121_40539253_40539582_40546222_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562821_40566032_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
19887	chr13	-	1368	3	Genic_Genomic	ENSMUSG00000114547.2	novel	1342	1	NA	NA	-102	158	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAATACTATACAT	NA	False	NA	NA	False	NA	NA	NA	112731720	112730118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_112730282_112730384_112730835_112730965
19888	chr10	-	3643	4	Antisense	novelGene_ENSMUSG00000073427.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	70	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGGCAGACCGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	82215461	82190105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_82190490_82204401_82204532_82204730_82204791_82212392
19889	chr1	+	3383	14	NNC	ENSMUSG00000047369.18	novel	1999	2	NA	NA	1877	26542	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	131	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAGGACAGTCACCAGC	NA	False	NA	NA	False	NA	NA	NA	181642899	181669881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_181644566_181644839_181644953_181645053_181645135_181646404_181646573_181647427_181647553_181648236_181648302_181648991_181649192_181653185_181653240_181656274_181656460_181659096_181659299_181659712_181659798_181663622_181663854_181665942_181666122_181669852
19891	chrX	-	4750	3	Genic_Genomic	ENSMUSG00000086503.5	novel	17946	7	NA	NA	-2190	28916	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCGCATGCGTACAGAT	NA	False	NA	NA	False	NA	NA	NA	102529050	102475055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_102475306_102491247_102491577_102524879
19892	chr1	+	1862	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	502.164625620413	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTATAAGGCAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	59724132	59750660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749753_59750507
19893	chr5	+	2281	5	NNC	ENSMUSG00000029462.19	novel	1014	5	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	905.789262190715	5544	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	710	False	NA	NA	False	NA	NA	NA	122492462	122503046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867_122501397_122501799
19894	chr6	-	2494	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	12	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	280.344817933467	1	68	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCCAGATGGTAAAG	3066	False	NA	NA	False	NA	NA	NA	71885716	71857680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865653_71866558_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885624
19895	chr7	-	2071	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	88	12	0	-12	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	6	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTGTCTCACTTTCTT	NA	False	NA	NA	False	NA	NA	NA	117728797	117718125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
19897	chr18	-	3605	6	NIC	ENSMUSG00000036223.17	novel	1256	6	NA	NA	0	-301	intron_retention	FALSE	canonical	3	429	junction_5	34.6040460062115	41	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATATATATTTTCAAAACG	6797	False	NA	NA	False	NA	NA	NA	74340818	74329850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_74330123_74330584_74330755_74332970_74335759_74337334_74337460_74339859_74339956_74340664
19900	chr1	-	5435	32	FSM	ENSMUSG00000005501.15	ENSMUST00000187758.7	3977	32	-2	-1456	-2	132	multi-exon	FALSE	canonical	3	37	junction_30	6.87528260700014	82	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATAAGTCTATTTTGGC	NA	False	NA	NA	False	NA	NA	NA	87936258	87872708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_87874430_87876223_87876319_87877653_87877750_87877880_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893027_87893065_87894905_87894993_87895231_87895321_87896117_87896172_87901798_87901857_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
19901	chr7	+	4122	11	NIC	ENSMUSG00000030759.17	novel	4962	13	NA	NA	4	485	combination_of_known_splicesites	FALSE	canonical	2	15	junction_8	124.397588401062	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGTAGTCCTTGGATCT	NA	False	NA	NA	False	NA	NA	NA	113113072	113170150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113160582_113160713_113165591_113165720_113167301
19902	chr1	-	2573	6	ISM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	21325	-9	-512	9	3prime_fragment	FALSE	canonical	3	1975	junction_5	124.802243569577	3	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAGCCTCATTTCTTTGC	NA	False	NA	NA	False	NA	NA	NA	181648619	181642890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238
19903	chr8	+	1071	8	ISM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	17289	0	16351	0	3prime_fragment	FALSE	canonical	3	1196	junction_1	76.0144991539947	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	107637571	107649720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
19904	chr3	-	7129	8	FSM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	263	19	263	-19	multi-exon	FALSE	canonical	3	18	junction_2	3.23879544250132	67	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAACAAAATATACAATCT	NA	False	NA	NA	False	NA	NA	NA	51468037	51422758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_51428909_51434265_51434424_51437491_51437610_51440395_51440478_51443886_51444077_51450052_51450255_51457655_51457786_51467938
19905	chr6	-	1371	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	2	245	junction_5	3903.40606251629	157	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCTCCTTGGTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	125142572	125138817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142117_125142275_125142514
19906	chr4	-	3311	12	Antisense	novelGene_ENSMUSG00000028476.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	54	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGCAAGGCTCCCGGAC	NA	False	NA	NA	False	NA	NA	NA	43944803	43918451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_43918492_43922809_43923025_43925060_43925198_43927145_43927285_43928274_43928466_43930192_43930313_43930885_43931059_43937307_43937500_43938885_43939098_43940654_43940729_43942271_43942422_43943135
19907	chr5	-	3489	30	FSM	ENSMUSG00000023079.15	ENSMUST00000111244.5	3461	30	-38	10	-17	-3	multi-exon	FALSE	canonical	3	55	junction_29	53.0244374146404	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACAAAAGCGTCACTTT	NA	False	NA	NA	False	NA	NA	NA	134485148	134386519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
19908	chr3	+	1721	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	927.987897799071	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3865	False	NA	NA	False	NA	NA	NA	88204483	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210205_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750_88228792_88228898
19909	chr12	-	3398	10	NNC	ENSMUSG00000021224.16	novel	3549	11	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	49.5747347041581	1	26	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCCCATGAAGGGCTG	NA	False	NA	NA	False	NA	NA	NA	83923589	83840843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_83842929_83846281_83846432_83847786_83848105_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872093_83878695_83878771_83888991_83889133_83923441
19911	chr2	+	3156	1	NIC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-2	-5713	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	178	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATGACCCAAAAAGTTAC	NA	False	NA	NA	False	NA	NA	NA	104389526	104392682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_104389500_104392700
19912	chr4	+	3952	8	NNC	ENSMUSG00000028278.15	novel	5008	7	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	46.2561634062016	123	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTCTTGAAGTGGGGT	13	True	NA	NA	False	NA	NA	NA	32983036	33022176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646_33019383_33020434
19913	chr5	-	4030	20	NIC	ENSMUSG00000029415.5	novel	5020	22	NA	NA	0	32	intron_retention	FALSE	canonical	3	262	junction_12	29.542776160488	6	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACATTTGTAGCAATTTG	NA	False	NA	NA	False	NA	NA	NA	92457848	92434567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_92434730_92436325_92436488_92437598_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
19914	chrX	-	2690	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	131	0	-9	0	multi-exon	FALSE	canonical	3	1240	junction_10	166.264514821681	1	76	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	NA	False	NA	NA	NA	93585618	93579079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
19915	chr8	+	1869	10	NIC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	2	2	intron_retention	FALSE	canonical	3	2216	junction_5	100.447885880081	4266	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCTCCAGCCCCATC	NA	False	NA	NA	False	NA	NA	NA	84441898	84449906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
19916	chr19	-	1767	12	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	977.522327533467	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3789	False	NA	NA	False	NA	NA	NA	7017309	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006109_7009925_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
19917	chr2	-	3309	18	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	-55	-15	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_17	450.131776168885	5	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTGAATGAATGAATGAAT	NA	False	NA	NA	False	NA	NA	NA	103627373	103597466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627172_103627293
19918	chr9	+	3022	9	NNC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	-3	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	290.376668096801	15	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTGCTTTTTGAGTCTTC	NA	False	NA	NA	False	NA	NA	NA	20799557	20803468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20799614_20799702_20800401_20800606_20800981_20801066_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
19919	chr12	+	4090	4	NNC	ENSMUSG00000034157.13	novel	2695	5	NA	NA	21	-30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	47.8632310744781	2	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAATAAAAGTCACTT	NA	False	NA	NA	False	NA	NA	NA	86993837	87012106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86994025_86999517_86999706_87007045_87007226_87008571
19920	chr13	-	1711	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2986.85933357623	3	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTGGTGGTCTTTTTT	4762	False	NA	NA	False	NA	NA	NA	58550319	58539765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542303_58542429_58543050_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
19921	chr4	-	678	3	FSM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	59	6	7	1	multi-exon	FALSE	canonical	3	1437	junction_2	42.5	5349	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGACTGCTTGTGGTGTC	9285	False	NA	NA	False	NA	NA	NA	133856041	133854722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133855118_133855228_133855397_133855926
19922	chr13	-	3045	6	NNC	ENSMUSG00000021556.13	novel	3689	11	NA	NA	11397	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	205.205263090399	19	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	59812189	59782809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59785216_59786118_59786227_59787933_59788156_59797403_59797480_59798509_59798565_59812011
19924	chr15	+	5647	20	FSM	ENSMUSG00000064210.8	ENSMUST00000071874.8	4927	20	1	-721	1	721	multi-exon	FALSE	canonical	3	69	junction_10	12.2043995518441	112	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGCCTAACGAGGTT	NA	False	NA	NA	False	NA	NA	NA	95688724	95873353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_95688938_95762105_95762189_95792293_95792423_95810185_95810252_95811252_95811538_95811752_95811867_95813833_95813950_95818124_95818260_95825404_95825511_95829663_95829725_95839090_95839234_95841278_95841357_95846152_95846379_95847371_95847542_95847739_95847838_95853771_95853903_95859956_95860163_95863701_95863905_95865503_95865610_95870375
19925	chr5	+	2509	17	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	94.5393436617792	577	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTTAGTAGTTTGTTGT	9197	False	NA	NA	False	NA	NA	NA	110987863	111022003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003002_111003112_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
19926	chr3	+	3438	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	52	-219	-14	219	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	576	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAACCGGTAAGAAGGACA	NA	False	NA	NA	False	NA	NA	NA	106455165	106483425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
19927	chr7	+	4945	19	NNC	ENSMUSG00000052707.9	novel	5223	20	NA	NA	362	-3	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_8	38.5509123044601	54	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTAAGTGGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	122771230	122794516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_122771342_122772455_122772633_122773366_122773543_122774648_122774682_122776046_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780610_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789067_122789290_122790722_122790794_122791281_122791422_122791801
19928	chr2	-	2525	8	NIC	ENSMUSG00000027496.16	novel	1905	9	NA	NA	16	-16	intron_retention	FALSE	canonical	3	87	junction_7	433.806361391432	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTATACCATCTACCTG	NA	False	NA	NA	False	NA	NA	NA	172212410	172198131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172206417_172208841_172209092_172210905_172210953_172212314
19929	chr19	-	3166	7	NIC	ENSMUSG00000024764.11	novel	3231	8	NA	NA	-3	0	intron_retention	TRUE	canonical	3	441	junction_1	30.998655884839	63	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	NA	False	NA	NA	NA	7218402	7203037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207649_7211468_7211522_7212427_7212524_7218302
19930	chr3	-	1823	12	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	282.903452853378	2114	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	147	False	NA	NA	False	NA	NA	NA	153650114	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635926_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
19931	chr15	+	1610	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	-243	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	596.354078966515	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGTGATGAAGTTGCA	NA	False	NA	NA	False	NA	NA	NA	100513571	100518612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248_100517527_100517679
19932	chr5	+	3280	21	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	119.069087088127	1	105	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCATTCCTATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	45827262	45857463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828566_45829614_45829848_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
19933	chr19	-	2489	11	NNC	ENSMUSG00000010095.14	novel	2813	10	NA	NA	-1603	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1236.7234492804	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGCCTCATGAGATTGT	NA	False	NA	NA	False	NA	NA	NA	8693400	8684944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8691478_8692155_8693315
19934	chrX	-	1982	12	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	-25	-2	at_least_one_novel_splicesite	FALSE	canonical	3	148	junction_10	377.275903601087	26	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GTAAAAAAAAAACCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100129036	100122829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127782_100127881_100128877
19935	chr6	+	5795	7	ISM	ENSMUSG00000029787.11	ENSMUST00000031805.11	6670	16	21512	0	-4474	0	3prime_fragment	FALSE	canonical	3	86	junction_2	11.066716867356	90	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGGCTATTGATCTCCTA	NA	False	NA	NA	False	NA	NA	NA	56713423	56738897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_56713962_56718353_56718489_56720316_56720537_56723265_56723384_56730349_56730404_56730822_56730912_56734256
19937	chr13	+	1817	9	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	627.375772065674	43	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588133	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610044_3614858_3614914_3614995
19939	chr12	+	2960	8	NIC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	-5	0	intron_retention	FALSE	canonical	3	476	junction_5	37.1054756947086	29	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	NA	False	NA	NA	NA	87194486	87211497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87208328_87208813_87208867_87209761_87209812_87210477
19940	chr5	-	3332	16	NNC	ENSMUSG00000042508.17	novel	3498	17	NA	NA	1	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	81.6578226503744	1	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTTGTCTTAAAATGCA	NA	False	NA	NA	False	NA	NA	NA	9211751	9168888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9200375_9200493_9201825_9201919_9211613
19941	chr11	-	3966	9	FSM	ENSMUSG00000049659.16	ENSMUST00000035350.12	3998	9	28	4	28	-4	multi-exon	FALSE	canonical	3	125	junction_7	17.066048165876	124	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTTAGCCTTTTGTCTT	9288	False	NA	NA	False	NA	NA	NA	20691561	20635087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680_20658738_20659619_20659747_20662163_20662316_20675684_20677640_20691305
19943	chr7	-	5365	6	FSM	ENSMUSG00000048330.15	ENSMUST00000055993.13	5281	6	27	-111	1	111	multi-exon	FALSE	canonical	3	56	junction_4	4.1182520563948	106	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATGTGCAAATCGACATA	NA	False	NA	NA	False	NA	NA	NA	108682511	108633407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_108638091_108647157_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
19944	chr15	+	1456	15	NIC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	29	103	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	145.271894974175	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTGTTTTTTGGTTTTT	2176	False	NA	NA	False	NA	NA	NA	102379140	102407180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
19945	chr7	+	2596	15	NIC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	-761	0	intron_retention	FALSE	canonical	3	3333	junction_5	370.622759139043	180	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTCATGCCTCAGCTGT	NA	False	NA	NA	False	NA	NA	NA	12758923	12764959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762706_12762807_12762915_12763014_12763052_12763133_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
19946	SIRV7	+	2467	4	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	93	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCGATTTCTCAAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	1000	147896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_2764_3784_3901_114683_114993_147617
19947	chr2	+	2223	19	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	25	1960	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	186.498808456128	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTGAAAAATGTCAATCAA	7257	False	NA	NA	False	NA	NA	NA	23046564	23087282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085389_23087177
19948	chr17	-	4110	5	FSM	ENSMUSG00000003929.12	ENSMUST00000235063.2	812	5	30	-3328	30	2391	multi-exon	FALSE	canonical	2	6	junction_3	15.2540978100968	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTCGTTAAAAACATCAAA	NA	False	NA	NA	False	NA	NA	NA	33577812	33550955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33557074_33557226_33577707
19950	SIRV3	-	2119	1	Antisense	novelGene_SIRV3A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	255	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATTTCGATTTCCTTAC	NA	False	NA	NA	False	NA	NA	NA	8292	6173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV3_-_6200_8300
19951	chr10	+	2160	9	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-8	-13	intron_retention	FALSE	non_canonical	0	0	junction_8	522.457115464992	13	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTATAACCTCTGTCT	1577	False	NA	NA	False	NA	NA	NA	79690454	79700180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79699080
19953	chr7	-	2824	20	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	17	-457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	615.521448643028	1	113	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATAGTTGCTTGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	126165359	126146083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158030_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
19954	chr5	+	1634	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1410.14502800244	1	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATATTCTCGCTGTGTGGT	281	False	NA	NA	False	NA	NA	NA	77099148	77115351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099194_77099641_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112376_77114645
19956	chr13	-	3908	7	Fusion	ENSMUSG00000114549.2_ENSMUSG00000114839.2	novel	1621	5	NA	NA	-11673	354	intron_retention	FALSE	non_canonical	0	0	junction_4	66.1700251036844	26	10	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTGAGATTCCTTT	4296	False	NA	NA	False	NA	NA	NA	66901050	66830548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66833621_66834628_66834801_66836256_66836399_66841838_66841917_66888835_66889043_66889243_66889330_66900899
19957	chr12	-	2075	19	Intergenic	novelGene_4407	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	7	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTCGCGCTCAGCAG	NA	False	NA	NA	False	NA	NA	NA	76349782	76302156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_76302319_76317191_76317274_76326174_76326236_76326928_76326983_76327151_76327290_76327401_76327501_76329658_76329797_76330703_76330813_76335649_76335780_76336201_76336298_76336487_76336632_76337753_76337895_76340166_76340210_76340911_76341019_76341125_76341203_76344254_76344357_76347159_76347359_76348029_76348170_76349729
19958	chr15	+	3576	9	Antisense	novelGene_ENSMUSG00000022195.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	154	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCGCTTCCGGATTGGA	NA	False	NA	NA	False	NA	NA	NA	12808501	12824739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_12810929_12812016_12812157_12814274_12814343_12815934_12816057_12816404_12816471_12817945_12818218_12821491_12821640_12823646_12823795_12824554
19959	SIRV2	+	1689	9	Genic_Genomic	SIRV2C_SIRV2B	novel	523	1	NA	NA	-74	-35	multi-exon	FALSE	non_canonical	0	0	junction_1	0	281	9	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGTTCGACTATTATA	NA	False	NA	NA	False	NA	NA	NA	1034	4422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV2_+_1650_1726_1853_1972_2062_2671_2802_2877_3010_3101_3326_3665_3828_3967_4095_4338
19960	chr2	-	5603	31	NNC	ENSMUSG00000033526.17	novel	5171	30	NA	NA	5	-13	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	23.6360365167729	101	39	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAATGAGAACGAGGGG	NA	False	NA	NA	False	NA	NA	NA	121181493	121141054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121142964_121147135_121147250_121152199_121152274_121157332_121157396_121158125_121158252_121162038_121162130_121162722_121162873_121164893_121165059_121165203_121165318_121166876_121166985_121167206_121167322_121167563_121167692_121167929_121168154_121168302_121168445_121171231_121171415_121172096_121172219_121172385_121172518_121173057_121173141_121173235_121173346_121173441_121173518_121173619_121173707_121173956_121174059_121177744_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397
19962	chrX	-	2367	13	NNC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	10	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.505417407237	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCATGGTGTTTGTGAGA	NA	False	NA	NA	False	NA	NA	NA	95000509	94978936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979167_94981045_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
19963	chr9	+	671	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	2	22	2	11	multi-exon	FALSE	canonical	3	566	junction_1	0	2927	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCAGCCTTCATCCAAAG	NA	False	NA	NA	False	NA	NA	NA	22068143	22069632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_22068210_22069027
19964	chr9	+	1782	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	724.176876709227	81	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAATGAATGATGTAAT	NA	False	NA	NA	False	NA	NA	NA	54493760	54511226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497205_54499482_54499547_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
19965	chr7	+	2510	11	Antisense	novelGene_ENSMUSG00000100068.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	38	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTAACGGCCGGCGCTC	6003	False	NA	NA	False	NA	NA	NA	35192423	35237109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_35193759_35200815_35200896_35203578_35203658_35204402_35204498_35208201_35208393_35210640_35210730_35211358_35211413_35221344_35221472_35223369_35223498_35228535_35228699_35236940
19966	chr19	+	5280	13	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-67	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.0577729130549	1	99	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTGTTGCTTGCCCCTG	NA	False	NA	NA	False	NA	NA	NA	25214271	25411855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_25214357_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410891
19967	chr16	+	3266	18	NIC	ENSMUSG00000005899.15	novel	4532	19	NA	NA	0	136	intron_retention	FALSE	canonical	3	223	junction_5	25.2659213567786	2	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCTTGCTTCGGAGATT	NA	False	NA	NA	False	NA	NA	NA	17437244	17461347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459694_17460032_17460162_17460337
19968	chr4	-	4766	6	Antisense	novelGene_ENSMUSG00000043411.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	220	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCTCAGTACAATTCT	NA	False	NA	NA	False	NA	NA	NA	137361365	137344957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_137348568_137350580_137350699_137352469_137352597_137355482_137355556_137360423_137360548_137360651
19969	chr10	+	2389	10	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	63	-21	intron_retention	FALSE	non_canonical	0	0	junction_7	553.331726905299	1	81	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATAAACACCTGTGTCT	294	False	NA	NA	False	NA	NA	NA	79694890	79700245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698403_79698631_79698704_79698811_79698890_79698978
19970	chr4	+	4382	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	30	-698	-8	698	multi-exon	FALSE	canonical	3	432	junction_2	33.5	1436	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTAAACTATTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	108185366	108199439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108185488_108189407_108189549_108195319
19971	chr2	-	2573	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	60	4	-48	0	multi-exon	TRUE	canonical	3	539	junction_7	54.5501807716732	591	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGTGAGGAATCTGTT	NA	False	NA	NA	False	NA	NA	NA	25101441	25089727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
19972	chr3	+	3200	7	NIC	ENSMUSG00000038393.15	novel	2795	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	413	junction_1	39.6137602355545	6	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATAAATGTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	96465275	96469172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
19973	chr4	-	2259	20	Intergenic	novelGene_2159	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCCCGAGGCGGGCGTA	NA	False	NA	NA	False	NA	NA	NA	148666858	148642885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148643034_148644002_148644141_148645468_148645593_148646762_148646867_148647167_148647335_148647476_148647592_148648296_148648372_148648564_148648679_148649054_148649199_148649658_148649851_148650734_148650891_148652821_148652972_148653106_148653159_148654843_148654954_148657373_148657425_148657565_148657646_148657733_148657842_148660265_148660317_148666229_148666289_148666737
19974	chr14	-	4021	20	NNC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-10	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	77.6131110950361	3	54	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTCTTGGTTTCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	123220639	123156383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182273_123182919_123183013_123184364_123184595_123187900_123188005_123192042_123192453_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
19975	chr18	+	5153	6	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	4	1063	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	98.5101010049223	2	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGTGAGAGCGACAGTT	NA	False	NA	NA	False	NA	NA	NA	82935882	83020888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_82935974_82973648_82975575_83004866_83006324_83011194_83011315_83012594_83012663_83019397
19976	chr8	+	3220	4	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	6	-767	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	368.380238340767	54	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATAGGTGTGGCACC	NA	False	NA	NA	False	NA	NA	NA	20016471	20045121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030924_20035860_20038399_20045029
19977	chr7	+	2387	5	NNC	ENSMUSG00000045411.17	novel	2908	6	NA	NA	0	-13	intron_retention	FALSE	canonical	0	0	junction_1	327.877549551658	2	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATTGCCCTCTGTA	NA	False	NA	NA	False	NA	NA	NA	43896214	43901723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896811_43898990_43899024_43899444_43899484_43899732_43899765_43900036
19978	chr3	-	3097	2	Antisense	novelGene_ENSMUSG00000047213.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGACCCCTTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	16270337	16258710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_16259588_16268117
19983	chr9	-	3321	28	NIC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	-19	-8031	combination_of_known_junctions	FALSE	canonical	3	490	junction_24	107.976881130687	1	57	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAATGACTGTGTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	20864160	20826847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851848_20852668_20852880_20852994_20853103_20853878_20853916_20864003
19985	chr2	+	2457	13	NNC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	1	1067	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	144.585902955071	12	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGGTGTAATACTGTG	NA	False	NA	NA	False	NA	NA	NA	69553198	69580959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69553302_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69571966_69574039_69574125_69576371_69576460_69579304_69579442_69579615
19986	chr17	+	3575	20	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	72	-12	intron_retention	FALSE	canonical	3	10	junction_6	46.6502279449203	1	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGGTGTATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	45817838	45831757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825848_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
19987	chr15	-	2385	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	373	-8	-163	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	1029	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8503	False	NA	NA	False	NA	NA	NA	76501211	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
19989	chr6	-	1977	9	ISM	ENSMUSG00000061838.8	ENSMUST00000079847.8	2518	11	97128	4	48255	-4	3prime_fragment	FALSE	canonical	3	467	junction_5	98.2216084932435	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCTCACAGTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	95572735	95451126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634
19990	chr3	-	2277	6	NNC	ENSMUSG00000027506.16	novel	6317	6	NA	NA	-7	164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1351.72236794395	2130	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	9069545	8994493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8996235_9000051_9000107_9009637_9009773_9012540_9012690_9018743_9018860_9069464
19991	chr7	+	1975	11	NNC	ENSMUSG00000030867.8	novel	2199	10	NA	NA	-13	-76	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	366.335761290104	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATTGTATAAATGTTTCT	NA	False	NA	NA	False	NA	NA	NA	121758716	121769020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609_121768833_121768925
19993	chr5	-	2421	4	ISM	ENSMUSG00000042508.17	ENSMUST00000184401.8	5057	18	30734	-3	-1683	-1	3prime_fragment	FALSE	canonical	3	217	junction_1	29.044027881056	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAAGATTTTGAGCCATG	NA	False	NA	NA	False	NA	NA	NA	9172414	9168873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781
19994	chr4	-	2157	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	38	-81	38	81	multi-exon	FALSE	canonical	3	1281	junction_1	0	2345	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTAAGCATGGGCGATT	7	True	NA	NA	False	NA	NA	NA	49521055	49512514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_49514578_49520961
19995	chr17	-	1962	15	NNC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	653.965614929565	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906496	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896215_45896344_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
19996	chrX	-	3138	15	NIC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-57	-56489	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	211.138990878965	1	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCATCTGTTCTACTTTG	NA	False	NA	NA	False	NA	NA	NA	59224506	59157807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
19998	chrX	+	1529	10	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	-20	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1495.24944035732	20	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105230748	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238030_105240463_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
19999	chr3	-	3025	11	NIC	ENSMUSG00000005968.15	novel	2555	12	NA	NA	-4	-7	intron_retention	FALSE	canonical	3	51	junction_8	17.5772580341759	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACATCTCTTTGCCCCGTG	6505	False	NA	NA	False	NA	NA	NA	94566114	94520072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
20000	chr1	-	4064	7	Antisense	novelGene_ENSMUSG00000025958.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCAGCCAGCGCCGCCC	NA	False	NA	NA	False	NA	NA	NA	64639542	64571990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_64572179_64597660_64597804_64605370_64605475_64609290_64609436_64613231_64613413_64615335_64615487_64636390
20001	chr11	+	2801	1	ISM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	88551	0	10421	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	NA	False	NA	NA	NA	46035369	46038170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_46035400_46038200
20002	chr6	+	2527	12	Antisense	novelGene_ENSMUSG00000030177.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	335	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAATCGCTCACGAGCTCA	NA	False	NA	NA	False	NA	NA	NA	120301283	120334359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_120302452_120306051_120306207_120306293_120306423_120308774_120308993_120311729_120311876_120315026_120315122_120316095_120316158_120318931_120319030_120325345_120325492_120327167_120327350_120330959_120331013_120334284
20003	chr11	-	2614	5	NNC	ENSMUSG00000020925.17	novel	2366	5	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	282.847573791963	899	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTTCTGTCTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	102588553	102575512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102577627_102579626_102579686_102581026_102581163_102582936_102583025_102588336
20004	chr16	-	3797	23	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	-5	-23	combination_of_known_junctions	FALSE	canonical	1	1	junction_22	40.2449113871802	6	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACATAGAGATGACTTTC	NA	False	NA	NA	False	NA	NA	NA	10993969	10954478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10993800
20005	chr6	-	2980	21	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	147.947718806341	10	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3520	False	NA	NA	False	NA	NA	NA	125168539	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148043_125154711_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
20006	chr10	+	818	1	NIC	ENSMUSG00000020153.15	novel	983	9	NA	NA	9	-3127	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACAACTCCAGCCCCAAA	9709	False	NA	NA	False	NA	NA	NA	80085302	80086120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80085300_80086100
20007	chr10	+	1856	2	FSM	ENSMUSG00000020153.15	ENSMUST00000155336.2	770	2	-234	-852	-234	-800	multi-exon	FALSE	canonical	3	2193	junction_1	0	16	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGACATCTATGTGCCAG	NA	False	NA	NA	False	NA	NA	NA	80088914	80091826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80089618_80090673
20008	chr7	+	2491	13	NIC	ENSMUSG00000008373.17	novel	3144	14	NA	NA	30	-4	intron_retention	FALSE	canonical	3	674	junction_1	79.9268763030031	12	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGAGGGTGTGAGTGA	2970	False	NA	NA	False	NA	NA	NA	3633020	3644224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3642704_3642787_3642887_3643795
20009	chr10	+	2576	15	Antisense	novelGene_ENSMUSG00000020076.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	47	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCACTTCCGGGCCACGCA	NA	False	NA	NA	False	NA	NA	NA	62451802	62486998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62452328_62457166_62457302_62460545_62460663_62460929_62460997_62461940_62462061_62463298_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476638_62478550_62478736_62479077_62479154_62482694_62482983_62483313_62483423_62486803
20010	chr6	-	3548	12	FSM	ENSMUSG00000038784.14	ENSMUST00000114993.9	3473	12	-69	-6	-34	0	multi-exon	FALSE	canonical	3	79	junction_2	43.8453329687493	177	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGGGTGAGTCTTGTTC	7612	False	NA	NA	False	NA	NA	NA	35110693	34998999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
20011	chr11	-	1820	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2572.25835405388	12	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTGTTTTTCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	120239318	120236516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120237360_120237462_120237637_120237809_120238176_120238461_120238702_120238794_120238924_120239250
20012	chr15	-	1707	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	63	83	-1	-83	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	4	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	31601887	31591028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
20013	chr11	-	4065	23	NNC	ENSMUSG00000020273.14	novel	3747	22	NA	NA	6	2492	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.2037332615296	198	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATAAATAGATGATGTTTG	1275	False	NA	NA	False	NA	NA	NA	23845247	23810153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_23810364_23812531_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
20015	chr10	-	1502	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	5	976	5	-976	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	3	39	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACCAGCTCCGACTGAC	-9	True	NA	NA	False	NA	NA	NA	128401851	128394612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
20016	chr2	-	4640	15	FSM	ENSMUSG00000026773.20	ENSMUST00000114846.9	4634	15	-8	2	-8	0	multi-exon	FALSE	canonical	3	18	junction_2	9.41693004267163	80	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTGCGGGACTCGCTTC	6300	False	NA	NA	False	NA	NA	NA	11506920	11476638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11506435
20019	chr19	+	1383	11	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	116	-297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2862.90681650661	29	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	959	False	NA	NA	False	NA	NA	NA	8944520	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950370_8950437_8950473_8954681_8954855_8954948_8955074_8955307
20020	chr3	-	2875	6	NNC	ENSMUSG00000027828.13	novel	2957	5	NA	NA	34	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	282.135853800966	1	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAATGTGTTTTGT	2750	False	NA	NA	False	NA	NA	NA	65300010	65287089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_65287151_65287188_65289456_65290412_65290545_65295152_65295252_65298741_65298873_65299825
20021	chr18	+	3194	11	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	-4	1	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	92.6777211631792	37	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTAATTGAAGTAGACAC	957	False	NA	NA	False	NA	NA	NA	38429718	38450890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38429852_38430518_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
20023	chr2	+	4277	19	FSM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	-115	-17	-100	17	multi-exon	TRUE	canonical	3	323	junction_9	42.2163738639668	373	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGTCTTCTTTTTT	3461	False	NA	NA	False	NA	NA	NA	126549147	126601234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
20024	chr5	+	1908	7	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-135	-6	intron_retention	FALSE	non_canonical	0	0	junction_4	1282.52468029101	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAATATATTCTCGCTGT	621	False	NA	NA	False	NA	NA	NA	77099488	77115346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109047_77112233_77112470_77114093_77114253_77114494
20025	chr15	-	2108	7	NNC	ENSMUSG00000063765.13	novel	2548	6	NA	NA	5721	3197	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGACAGCGCGGACCTTAA	NA	False	NA	NA	False	NA	NA	NA	81572508	81567168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81567257_81568041_81568190_81568497_81568584_81568913_81569148_81569579_81569648_81570412_81570538_81571149
20027	chr13	-	2296	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	85	108	1	-11	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	2	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGGTGGAAAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	100922993	100915265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
20028	chr2	-	3215	9	NNC	ENSMUSG00000048327.7	novel	3137	9	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	106.702565573654	557	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	129139107	129110129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138130_129138301_129139024
20030	chr8	-	3649	9	FSM	ENSMUSG00000031729.7	ENSMUST00000212973.2	3633	9	-20	4	-20	-4	multi-exon	FALSE	canonical	3	528	junction_2	54.85990680816	21	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTCTAGTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	110419912	110397964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_110399274_110402007_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
20031	chr3	-	830	3	ISM	ENSMUSG00000002227.16	ENSMUST00000002297.12	3498	20	18243	4095	17355	-4095	internal_fragment	FALSE	canonical	3	1195	junction_2	106.5	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	104707315	104706246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104706925_104707013_104707112_104707261
20033	chr13	+	3768	28	NNC	ENSMUSG00000021686.7	novel	4021	27	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	85.0625203783303	10	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGCATTTGCCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	94495467	94702816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112_94702263_94702506
20034	chr17	+	5798	30	FSM	ENSMUSG00000024169.17	ENSMUST00000024983.12	5489	30	-309	0	-3	0	multi-exon	FALSE	canonical	3	43	junction_2	11.5756314625783	55	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAAAAGGCTGTAC	6874	False	NA	NA	False	NA	NA	NA	25235055	25318461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25235879_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
20035	chr8	+	2151	17	FSM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	391	25	0	-2	multi-exon	FALSE	canonical	3	179	junction_1	103.16006979447	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85415885	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
20036	chr7	-	2688	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	433.128464233102	2	95	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153788	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130430_143138370_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
20037	chrX	-	3050	4	NIC	ENSMUSG00000079432.2	novel	3698	5	NA	NA	58	-471	combination_of_known_splicesites	FALSE	canonical	1	6	junction_3	101.004950373732	1	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGAAAACCAGAAGCAACA	NA	False	NA	NA	False	NA	NA	NA	134078323	134068843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_134070935_134071511_134072097_134073399_134073700_134078249
20039	chr11	+	2053	3	Antisense	novelGene_ENSMUSG00000020493.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	25	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATTGTTCAGAGGGGTC	NA	False	NA	NA	False	NA	NA	NA	86980530	86987853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_86980549_86980721_86982694_86987790
20040	chr5	+	2084	6	ISM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	3	5	0	2	intron_retention	FALSE	canonical	3	5474	junction_3	323.746567549372	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGGAGTCTGGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130
20041	chr15	+	4407	7	ISM	ENSMUSG00000022412.15	ENSMUST00000229138.2	4097	8	27	729	-1	-166	intron_retention	FALSE	canonical	3	52	junction_1	78.4488509936393	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAAATCCAAATTTATTT	2842	False	NA	NA	False	NA	NA	NA	80118307	80136821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_80118383_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
20042	chr10	+	2728	6	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	-27	-139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	661.914012542415	1	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCTTTGCCATACTTGC	NA	False	NA	NA	False	NA	NA	NA	41395469	41406905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395687_41397898_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
20043	chr2	+	4504	1	NIC	ENSMUSG00000026811.19	novel	2402	6	NA	NA	7237	-21	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	22	60	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAACACGCCTAAGCC	NA	False	NA	NA	False	NA	NA	NA	32506291	32510795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32506300_32510800
20044	chr17	-	2483	17	FSM	ENSMUSG00000024039.16	ENSMUST00000236853.2	6226	17	-2	3745	-2	1	multi-exon	FALSE	canonical	3	120	junction_2	62.6156118212543	794	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTGTCGACCTTATTTC	1909	False	NA	NA	False	NA	NA	NA	31856175	31831612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
20045	chr10	+	2561	8	NNC	ENSMUSG00000020088.11	novel	2613	7	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	459.585971615891	1812	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516101	61529076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063_61527335_61527373
20046	chr14	+	2402	14	NIC	ENSMUSG00000036023.7	novel	2173	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	749	junction_2	38.1001483169705	1396	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	51045381	51058757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
20047	chr9	-	2063	7	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	2128.90937780096	1	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGTGAGTAGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	110775162	110768675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110772754_110772955_110773258_110773312_110774891
20048	chr7	-	3283	11	FSM	ENSMUSG00000066568.13	ENSMUST00000085585.12	2944	11	167	-506	-41	506	multi-exon	FALSE	canonical	3	572	junction_4	54.3963234051714	556	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCAGAGTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34088945	34043564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_34045384_34047350_34047408_34050710_34050943_34052814_34052987_34053089_34053273_34056858_34056922_34057190_34057368_34065039_34065163_34070479_34070610_34074653_34074818_34088782
20049	chr16	-	2009	11	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-17999	6479	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCAGCGCACAGCGATGA	NA	False	NA	NA	False	NA	NA	NA	38411661	38383205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38383410_38384476_38384661_38393412_38393638_38396103_38396187_38399003_38399054_38402327_38402487_38405535_38405879_38405978_38406041_38406580_38406771_38408544_38408664_38411271
20052	chr5	+	2806	1	FSM	ENSMUSG00000077564.3	ENSMUST00000104376.3	129	1	-1974	-703	-1974	703	mono-exon	FALSE	NA	NA	NA	NA	NA	24	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCACCAGGACTGTGAAGT	NA	False	NA	NA	False	NA	NA	NA	146769979	146772785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146770000_146772800
20053	chr6	-	3969	14	Antisense	novelGene_ENSMUSG00000107539.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCAAGATGGCGGCGAGC	NA	False	NA	NA	False	NA	NA	NA	86409771	86381293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_86381505_86390785_86390883_86393284_86393389_86395863_86395923_86396089_86396113_86397302_86397394_86400587_86400654_86401326_86401401_86401941_86402186_86402431_86402526_86402640_86402727_86403547_86403671_86404652_86404799_86407220
20054	chr13	+	2492	21	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	11	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	588.270821985928	4	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGATACTGTGTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	49835616	49887732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865317_49868289_49868374_49869160_49869344_49887242_49887373_49887498
20055	chr18	-	5148	25	FSM	ENSMUSG00000024413.15	ENSMUST00000025279.6	5224	25	60	16	-14	-16	multi-exon	FALSE	canonical	3	21	junction_11	10.5137971521024	95	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACCTCCTCCTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	12369397	12322765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_12324060_12324740_12324904_12326350_12326465_12327119_12327352_12328065_12328267_12329540_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542_12344914_12345251_12345326_12346313_12346564_12347387_12347556_12352234_12352411_12354862_12354970_12356089_12356213_12369237
20056	chr8	+	3342	24	NNC	ENSMUSG00000034330.11	novel	4298	33	NA	NA	81280	-10	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	35.9048311486207	281	6	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCGTTAAGCGTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	118306309	118361871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_118306416_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
20057	chr2	+	5310	4	NNC	ENSMUSG00000037885.19	novel	2882	4	NA	NA	1175	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	58.0880557621119	70	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCATACGCTATTTGAA	7406	False	NA	NA	False	NA	NA	NA	129643611	129674185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_129643925_129652407_129653158_129669693_129673474_129673718
20058	chr14	-	1875	9	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCTGGCCTCTCCCGTGC	NA	False	NA	NA	False	NA	NA	NA	63380583	63359964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63360011_63370760_63370913_63371410_63371498_63373054_63373170_63373853_63374005_63375765_63375939_63376445_63376561_63379178_63379311_63379679
20060	chr10	-	7429	37	FSM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	-12	0	-12	0	multi-exon	FALSE	canonical	3	63	junction_35	14.4571258434836	146	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTCTTTGCTCATC	NA	False	NA	NA	False	NA	NA	NA	75600162	75481945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549286_75549466_75551432_75551585_75553271_75553533_75557111_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
20061	chr11	+	3103	10	NIC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	45	818	intron_retention	FALSE	canonical	3	1417	junction_8	115.997126401189	11	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGCTGTCACCGCTTCT	NA	False	NA	NA	False	NA	NA	NA	109541791	109558620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109555646_109556690_109556813_109557469_109557552_109558255
20062	chr11	+	3618	10	ISM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	68	4324	35	-4324	intron_retention	FALSE	canonical	3	6361	junction_7	577.922802311951	9	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGGGGGAACTGTAGA	NA	False	NA	NA	False	NA	NA	NA	55360578	55391340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738
20063	chr11	-	2542	2	ISM	ENSMUSG00000020717.20	ENSMUST00000124958.3	1020	5	18199	-1446	-5400	-854	3prime_fragment	FALSE	canonical	3	1527	junction_1	0	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCCCAAACCATAAACA	1302	False	NA	NA	False	NA	NA	NA	106587573	106580462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106582011_106586579
20064	chr2	+	3282	13	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	201	junction_1	24.4135379110307	30	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGTTCTGTGGTTTGTGT	4061	False	NA	NA	False	NA	NA	NA	180609053	180624249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
20065	chr2	-	2278	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	31	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	197.916750175421	40	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGTTGTGTTTAATTTA	NA	False	NA	NA	False	NA	NA	NA	165700062	165669043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165699974
20067	chr4	+	3235	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	-84	8	-84	-8	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	318	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACCAAGGCACTGGTGCC	NA	False	NA	NA	False	NA	NA	NA	105014459	105089953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
20068	chr13	+	4380	22	Antisense	novelGene_ENSMUSG00000114598.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	75	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACGGACCGGCCCCTAC	NA	False	NA	NA	False	NA	NA	NA	98860311	98951684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_98862291_98862579_98862743_98867279_98867483_98868582_98868724_98869030_98869180_98871524_98871636_98879915_98880049_98882308_98882413_98884723_98884818_98886363_98886403_98891558_98891760_98892070_98892146_98900191_98900270_98901011_98901062_98912331_98912424_98913894_98914000_98921287_98921391_98925872_98926026_98926241_98926382_98932800_98932878_98942815_98942909_98951587
20069	chr7	-	2685	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	434.056707362773	1	79	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153793	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140179_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
20070	chr2	-	2728	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	3	3	3	-3	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	407	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACAAGTTTTGTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	114485442	114346903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
20072	chr2	-	1967	5	ISM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	17954	173	-454	-131	3prime_fragment	FALSE	canonical	3	221	junction_3	42.8252262107277	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAGACCCAGTTCTCAA	NA	False	NA	NA	False	NA	NA	NA	5882289	5875970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651
20074	chr6	-	2525	7	NIC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	41	-323	intron_retention	FALSE	canonical	3	2400	junction_4	95.7914401186244	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTAAACTTTTAAGTTT	NA	False	NA	NA	False	NA	NA	NA	83294494	83282995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83283792_83285914_83286041_83286443_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
20075	chr17	+	2662	10	NNC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	-7	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	143.364682187648	138	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTTCAGAAATATTGCTG	NA	False	NA	NA	False	NA	NA	NA	26780511	26875896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857806_26860577_26860679_26874040
20076	chr3	-	595	1	NIC	ENSMUSG00000010538.15	novel	584	4	NA	NA	13482	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACAAAGACATGGGTCTG	NA	False	NA	NA	False	NA	NA	NA	88190663	88190068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88190100_88190700
20077	chrX	+	1287	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-52	-25	52	mono-exon	FALSE	NA	NA	NA	NA	NA	1292	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTACTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
20078	chr18	+	3259	10	NNC	ENSMUSG00000024283.16	novel	3070	14	NA	NA	2	-1282	intron_retention	FALSE	non_canonical	0	0	junction_8	191.443315918516	3	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATGATCCTGTTTCTC	9	True	NA	NA	False	NA	NA	NA	7868851	7920208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917556_7917676_7918432
20079	chrX	+	2491	11	Antisense	novelGene_ENSMUSG00000080862.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	36	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCACCAGGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	23086422	23231294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_23087091_23094811_23094927_23101464_23102269_23113604_23113809_23114362_23114486_23127675_23127813_23150798_23150912_23160453_23160519_23181367_23181439_23227730_23227828_23231200
20080	chr17	-	2276	8	NNC	ENSMUSG00000024327.17	novel	1550	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	214.290476137567	35	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34250656	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797_34250321_34250423
20081	chr17	-	2798	7	NIC	ENSMUSG00000015120.16	novel	824	7	NA	NA	-6	1406	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	537	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	4257	False	NA	NA	False	NA	NA	NA	25492847	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
20082	chr13	+	3081	30	NNC	ENSMUSG00000101308.2	novel	1613	4	NA	NA	7395	140033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	72	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCGTCCCCCACGCTCCT	NA	False	NA	NA	False	NA	NA	NA	106931972	107073337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984821_106993245_106993327_106993736_106993817_106997368_106997444_107002370_107002488_107007181_107007297_107011998_107012116_107012746_107012788_107013442_107013475_107016118_107016252_107019352_107019459_107020036_107020080_107023172_107023266_107025870_107025915_107028123_107028244_107028924_107029124_107032312_107032383_107033722_107033772_107035425_107035486_107037189_107037326_107046707_107046912_107047251_107047318_107056035_107056150_107061565_107061663_107073268
20083	chr19	-	3149	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	-35	1945	-35	-258	multi-exon	FALSE	canonical	3	707	junction_13	63.1947496940125	2	76	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTAGTTTCTGGCTTGCT	NA	False	NA	NA	False	NA	NA	NA	37340045	37248086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
20085	chr4	+	2350	17	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	12	-379	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	115.096087574687	2	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	NA	False	NA	NA	False	NA	NA	NA	44300887	44364296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44309002_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
20086	chr10	-	3746	6	NIC	ENSMUSG00000000901.18	novel	1793	9	NA	NA	0	-36	intron_retention	FALSE	canonical	3	194	junction_2	16.451139778143	4	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCAAGACTGTCATTAA	5083	False	NA	NA	False	NA	NA	NA	75768309	75759092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75759950_75761253_75762462_75762581_75762824_75762962_75763097_75763180_75764344_75768167
20087	chr3	+	3079	10	NIC	ENSMUSG00000008604.12	novel	3330	11	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_5	454.125288634951	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGTGGTTTGTTTGTTG	6130	False	NA	NA	False	NA	NA	NA	88461089	88477032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88471676_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
20089	chr15	-	2992	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-4	6	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_1	148.84294481843	532	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79855324	79800001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79802252_79802440_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
20090	chr5	-	3211	19	FSM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	-24	5	-24	-5	multi-exon	FALSE	canonical	3	99	junction_10	17.8879399334224	220	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGTGGCATCTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	86213466	86159887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
20091	chr2	-	2887	13	NNC	ENSMUSG00000016256.11	novel	1441	6	NA	NA	11536	11645	intron_retention	FALSE	non_canonical	0	0	junction_1	0	17	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGTGCGCCGGACACAACAA	6710	False	NA	-11	True	NA	NA	NA	174269296	174257640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174257746_174261815_174261937_174262114_174262224_174263499_174263611_174264357_174264466_174264842_174265947_174266399_174266532_174266904_174267046_174267704_174267819_174268107_174268204_174268279_174268420_174268606_174268738_174268821
20092	chr19	-	2039	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	1	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	913.076637936577	2	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3764	False	NA	NA	False	NA	NA	NA	7017334	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7009955_7011530_7011673_7012014_7012157_7012863_7013074_7017247
20093	chr7	-	4793	12	FSM	ENSMUSG00000030850.18	ENSMUST00000178534.8	1530	12	-243	-3020	165	-45	multi-exon	FALSE	canonical	3	22	junction_11	65.693629010445	11	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCGTTCTTGTAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	130121934	129993267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121606
20094	chr7	-	3643	15	NNC	ENSMUSG00000002980.15	novel	2429	15	NA	NA	0	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	160.810717101485	168	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGACACTTTCCTACCGC	3964	False	NA	NA	False	NA	NA	NA	19504420	19490068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19490545_19490632_19491376_19491694_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
20095	chr2	-	3507	28	NNC	ENSMUSG00000027546.16	novel	3729	28	NA	NA	76	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.6897627271076	1	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAAGGTTGCAGGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	168576183	168476362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168476791_168479523_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168575940
20096	chr2	-	3321	4	NIC	ENSMUSG00000027404.17	novel	1161	7	NA	NA	70	-13	intron_retention	FALSE	canonical	3	3295	junction_2	243.242448780818	6	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATACAGTTGATATATTC	NA	False	NA	NA	False	NA	NA	NA	130021184	130013567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130013864_130014522_130015680_130017249_130019087_130021153
20097	chr2	-	3382	14	FSM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	13	1	13	-1	multi-exon	FALSE	canonical	3	379	junction_8	12.585330053057	2	86	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACCCGTTTGTATAGCAT	6990	False	NA	NA	False	NA	NA	NA	140012471	139961803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
20099	chr16	+	4853	12	ISM	ENSMUSG00000039473.9	ENSMUST00000229126.2	5589	17	13017	4	-655	0	3prime_fragment	FALSE	canonical	3	39	junction_11	11.7163444500718	79	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	922	False	NA	NA	False	NA	NA	NA	4881614	4904149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_4881641_4882211_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4901919
20101	chr3	+	2116	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1073.59249263242	2	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3799	False	NA	NA	False	NA	NA	NA	88204417	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216646_88218979_88219130_88220397_88220682_88220862_88220945_88225652_88225834_88227766_88228008_88228320_88228453_88228750
20102	chr4	-	2962	20	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	157	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	139.761550001156	3	65	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	6	True	NA	NA	False	NA	NA	NA	41124298	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114922_41115274_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117806_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120051_41122252_41122304_41123258_41123376_41123458_41123660_41124158
20103	chr2	-	3397	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-3	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	220.88074962648	1	118	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCCCATATGATATA	NA	False	NA	NA	False	NA	NA	NA	127673788	127643064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656884_127658008_127658068_127659171_127659399_127661132_127661288_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
20104	chr11	+	2574	10	NNC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	13	752	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	120.565744577107	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017317	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105017433_105017601_105017694_105019681_105019902_105021272_105021323_105021754_105021892_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
20106	chr9	+	3508	21	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	38	-7	intron_retention	FALSE	canonical	3	114	junction_20	32.821639203428	141	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACAGAGACTGACCTGGT	5774	False	NA	NA	False	NA	NA	NA	21249161	21266314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
20107	chr8	+	3205	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	606.750380031722	1	113	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8847	False	NA	NA	False	NA	NA	NA	120637572	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637639_120658582_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681533_120681673_120682936_120682992_120683318
20108	chrX	+	2836	8	NNC	ENSMUSG00000019087.14	novel	2157	10	NA	NA	-3	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	318.372134971845	1	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTGTTGGGCTTCGTGT	NA	False	NA	NA	False	NA	NA	NA	73340764	73348291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73340908_73341228_73341356_73343855_73343931_73344183_73344971_73345538_73345628_73345967_73346207_73346827_73346876_73346963
20109	chr15	+	1555	12	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	5220.66311452596	295	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAATGACAACTGTATGG	NA	False	NA	NA	False	NA	NA	NA	103148877	103153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682_103152965_103153309
20110	chr3	-	4034	5	NNC	ENSMUSG00000027845.16	novel	4345	4	NA	NA	2	0	intron_retention	FALSE	non_canonical	0	0	junction_1	37.5	178	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTATACTGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	103716703	103707920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103708420_103708675_103711372_103714709_103714893_103715387_103715554_103716213
20112	chr4	-	2444	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.665829357099	2	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726988	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697933_147698100_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
20113	chr11	+	3211	10	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	47	-7	intron_retention	FALSE	canonical	0	0	junction_8	132.880899053752	11	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCAGCCTCCGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	102139754	102156006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151447_102153008_102153127_102154746
20115	chr3	-	2448	10	NIC	ENSMUSG00000005813.13	novel	2686	11	NA	NA	-6	5	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	120.945758682187	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCTAGTTGTATTTGT	NA	False	NA	NA	False	NA	NA	NA	138195165	138164711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_138166262_138168125_138168192_138171984_138172129_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
20117	chr5	+	797	2	FSM	ENSMUSG00000058558.13	ENSMUST00000151767.2	815	2	13	5	13	0	multi-exon	FALSE	canonical	3	8146	junction_1	0	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTGTGTTAAGCTG	NA	False	NA	NA	False	NA	NA	NA	108054500	108055916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108055144_108055762
20119	chr3	+	2066	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	-59	3	-59	2	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	151	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCGTGCTGGATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32762596	32781119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
20120	chr7	+	2104	4	NIC	ENSMUSG00000006333.15	novel	813	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	206	junction_2	6628.90666366299	6	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1311	False	NA	NA	False	NA	NA	NA	3707038	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707448_3707644_3708919_3709006_3709181_3709649
20121	chr9	+	3450	28	NNC	ENSMUSG00000036768.7	novel	4858	35	NA	NA	0	-552	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	60.7050030367348	2	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATGAACATGAAGAGATTA	NA	False	NA	NA	False	NA	NA	NA	122780141	122843037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910_122817089_122820150_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825462_122826846_122827013_122828239_122828391_122828579_122828590_122833635_122833759_122836378_122836526_122838381_122838484_122838821_122838990_122840592_122840703_122843004
20122	chr10	-	567	2	Antisense	novelGene_ENSMUSG00000023175.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	543	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGCCACGATGCCTAGGA	7304	False	NA	NA	False	NA	NA	NA	79547803	79546687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79546771_79547319
20123	chr14	+	3506	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	-38	-29	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_14	170.131243456339	1	116	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAATAATTAAATATATA	NA	False	NA	NA	False	NA	NA	NA	56640115	56726863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700654_56703089_56703275_56705121_56705264_56708753_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720712_56720851_56720940_56722610_56722702_56724418_56724535_56726767
20125	chrX	+	2205	2	ISM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	-1	16	-1	-16	intron_retention	FALSE	canonical	3	2920	junction_1	0	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAAGTTCGCTTATGTT	NA	False	NA	NA	False	NA	NA	NA	73314416	73316725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73314481_73314584
20126	chr11	+	3170	10	NIC	ENSMUSG00000020755.10	novel	3654	11	NA	NA	15	-4	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	100.552915864677	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTTTGGTTTTGTG	414	False	NA	NA	False	NA	NA	NA	115824477	115857547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115824608_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
20127	chr12	+	3456	20	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	13	-127	intron_retention	FALSE	canonical	3	11	junction_7	190.45427541783	1	58	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAAAATGGCTCCCCAA	4068	False	NA	NA	False	NA	NA	NA	83679112	83728667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83698419_83698525_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83722093_83722855_83722955_83724628_83724677_83728276
20128	chr10	+	2453	12	FSM	ENSMUSG00000019970.16	ENSMUST00000092673.11	2576	12	125	-2	125	0	multi-exon	FALSE	canonical	3	12	junction_1	274.769775907151	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21869913	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870081_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
20129	chr11	-	3109	16	NIC	ENSMUSG00000020361.14	novel	4618	19	NA	NA	11319	1303	intron_retention	FALSE	canonical	3	1487	junction_12	217.001382484075	9	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTTAAGTTGTCAACT	NA	False	NA	NA	False	NA	NA	NA	53179919	53152403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850
20130	chr4	-	3519	20	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	-7	3024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	135.503452338189	1	147	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGAGGAAGGACTGCTGA	NA	False	NA	NA	False	NA	NA	NA	115980863	115948436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115948544_115953461_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
20131	chr4	-	835	1	Antisense	novelGene_ENSMUSG00000028703.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAACAAAGTCATACA	NA	False	NA	NA	False	NA	NA	NA	115947363	115946528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_115946500_115947400
20132	chr5	-	3544	11	NNC	ENSMUSG00000029246.15	novel	3981	11	NA	NA	-56	-78	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	188.020451015308	1	133	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATAAACCTACTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	77099068	77061200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069388_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
20133	chr14	+	1969	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	6	2768	6	1292	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCTGCAGTTTCAAGGC	NA	False	NA	NA	False	NA	NA	NA	63359916	63380604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
20134	chr7	+	1113	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	32	87	32	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATCCCAGACCCCCATA	NA	False	NA	NA	False	NA	NA	NA	51396426	51397539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397500
20135	chr4	+	4199	3	FSM	ENSMUSG00000043252.9	ENSMUST00000062684.9	4670	3	469	2	469	-2	multi-exon	FALSE	canonical	3	428	junction_2	4.5	378	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCTCTCTTCTCTTTCT	107	False	NA	NA	False	NA	NA	NA	15266299	15286751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_15266750_15281006_15281163_15283158
20136	chr2	+	2380	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	14	1209	-2	501	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	2497	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATTTGTTTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	181138971	181158550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
20137	chr13	+	2309	9	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	65	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGAGTCTGCCGGGCTTA	NA	False	NA	NA	False	NA	NA	NA	100915250	100923008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916282_100916536_100916639_100917278_100917423_100917663_100917903_100918132_100918291_100919971_100920154_100921962_100922129_100922243_100922412_100922889
20138	chr11	+	2791	17	ISM	ENSMUSG00000035152.15	ENSMUST00000065692.14	3269	21	21852	-3	16388	3	3prime_fragment	FALSE	canonical	3	171	junction_10	24.811791551599	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAACTGCACCTTATTGT	NA	False	NA	NA	False	NA	NA	NA	83215451	83293841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
20139	chr10	-	4196	20	FSM	ENSMUSG00000020092.10	ENSMUST00000020289.10	4282	20	78	8	78	-8	multi-exon	FALSE	canonical	3	320	junction_14	26.6759563689748	5	116	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACATACTGCTTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	61219231	61155442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
20140	chr15	-	1197	9	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	59	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	10028.2458141678	24	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	4400	False	NA	NA	False	NA	NA	NA	79966725	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964574_79964754_79965096_79965233_79965815_79965985_79966590
20141	chrX	-	4421	20	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	65	-17	intron_retention	FALSE	canonical	3	7	junction_19	18.7837968720583	7	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTTAAGAAAAAGGAACAT	NA	False	NA	NA	False	NA	NA	NA	134985926	134972864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982185_134985845
20142	chr18	-	2127	8	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	18	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.375952558535	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGTCTTTTGTGAATT	NA	False	NA	NA	False	NA	NA	NA	38472011	38460605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38460929_38461050_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
20143	chr3	-	2531	8	NNC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	7	0	intron_retention	FALSE	canonical	2	45	junction_7	338.124539307091	28	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6161	False	NA	NA	False	NA	NA	NA	153618585	153612929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615236_153615700_153615799_153615897_153616004_153616327_153617661_153618550
20144	chr17	+	3287	22	NNC	ENSMUSG00000023938.9	novel	2956	11	NA	NA	364	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	44.1232041318074	21	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	45818130	45831769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818310_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
20145	chr3	-	1958	2	NNC	ENSMUSG00000106365.2	novel	1270	2	NA	NA	-74	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	59	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	122423386	122415897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_122417744_122423274
20146	chr5	-	3759	17	NNC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	-34	-688	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	108.19410725058	7	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCTTGCTTATTACCC	NA	False	NA	NA	False	NA	NA	NA	23881480	23711137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23821324_23821389_23834329_23834476_23881311
20147	chr3	+	882	1	Antisense	novelGene_ENSMUSG00000028188.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTATATTTAGTATAAATA	NA	False	NA	NA	False	NA	NA	NA	146173111	146173993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_146173100_146174000
20148	chr3	-	1761	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	2	26	2	-26	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	3611	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATAAAATCCTTAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	131065748	131027093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
20149	chr15	-	1640	10	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	3742	11	3477	-11	3prime_fragment	FALSE	canonical	3	5476	junction_6	273.45895938721	1	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCCACTTATTCAGAGCT	3591	False	NA	NA	False	NA	NA	NA	31598208	31590956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145
20151	chr11	-	3578	1	ISM	ENSMUSG00000056579.19	ENSMUST00000132077.4	6719	2	4157	17	3753	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTACTTTGAGTTGGG	NA	False	NA	NA	False	NA	NA	NA	3593379	3589801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_3589800_3593400
20152	chr10	-	2359	9	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	5	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	437.034252090154	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAAACAGAAACTTAAGT	5276	False	NA	NA	False	NA	NA	NA	62322506	62291063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292059_62292134_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
20153	chr5	-	2165	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	11	-581	9	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	157	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4332	False	NA	NA	False	NA	NA	NA	123887466	123866488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
20154	chr19	-	1624	5	Antisense	novelGene_ENSMUSG00000011752.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTCGACAGACCGCCGCC	9943	False	NA	NA	False	NA	NA	NA	41907084	41900349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41900624_41904041_41904317_41905079_41905262_41906043_41906445_41906592
20157	chr4	+	822	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	37	0	-12	0	multi-exon	FALSE	canonical	3	3349	junction_3	129.102439945959	12483	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5417	False	NA	NA	False	NA	NA	NA	126571459	126603507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
20158	chr16	-	3040	17	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	-22	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.108184274931	7	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGGAAAAAAATATATC	2531	False	NA	NA	False	NA	NA	NA	21981791	21877791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21877855_21878422_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
20159	chr9	+	3662	7	Intergenic	novelGene_1075	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	124	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGCCAGAAAACTGAGCGA	NA	False	NA	NA	False	NA	NA	NA	58125837	58157015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127857_58136640_58136691_58137110_58137369_58140434_58140531_58141634_58142217_58154257_58154725_58156825
20161	chr1	+	555	5	ISM	ENSMUSG00000048960.14	ENSMUST00000027056.12	11053	40	67857	213816	-37208	-60206	internal_fragment	FALSE	canonical	3	21	junction_2	5.53962995154008	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGCTGGGAGGTACGTG	NA	False	NA	NA	False	NA	NA	NA	11131545	11160089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_11131622_11136017_11136141_11138234_11138340_11150246_11150349_11159940
20162	chr2	-	4464	16	NIC	ENSMUSG00000026773.20	novel	4756	16	NA	NA	26	-3	intron_retention	FALSE	canonical	2	5	junction_2	12.4988888395018	1	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACACCTGCGGGACTCGC	NA	False	NA	NA	False	NA	NA	NA	11558862	11476641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11479355_11485008_11485183_11486057_11486145_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11558637
20163	chr4	-	2178	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	-62	4	-52	-4	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	736	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCGTGTTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	151142472	151131760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
20165	chr8	+	3187	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	679.818919502546	1	123	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8846	False	NA	NA	False	NA	NA	NA	120637571	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675431_120675529_120677128_120677198_120678659_120678838_120679918_120680077_120681527_120681673_120682936_120682971_120683311
20167	chr2	+	1639	17	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	95	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	951.628043719683	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31406754_31406801_31408737_31408804_31410383
20168	chr13	-	1933	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1986.9610217719	1	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4797	False	NA	NA	False	NA	NA	NA	58550284	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
20169	chr3	+	1954	5	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-8	20164	4	940	5prime_fragment	FALSE	canonical	3	64	junction_4	31.87769596442	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACCACACCTGCACCACGA	NA	False	NA	NA	False	NA	NA	NA	135053810	135078680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605
20171	chr11	+	3148	1	ISM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	88195	9	10065	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	1	71	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGAAATGTTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	46035013	46038161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_46035000_46038200
20172	chr11	-	1985	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	53	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1903.64986539017	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACTGAATTAAGTGAAAT	9734	False	NA	NA	False	NA	NA	NA	106679240	106672380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673089_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677769_106677901_106679094
20174	chr7	+	3280	23	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	0	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	51.8990795950171	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCACTTAATAAACCCTT	543	False	NA	NA	False	NA	NA	NA	110628201	110655553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650773_110651517_110651684_110655277
20175	chr15	-	1681	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	14	-18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	1839.18014615208	5	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAACTGCTTCCACTTATT	NA	False	NA	NA	False	NA	NA	NA	31601936	31590963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597619_31598182_31598207_31601746
20176	chr4	+	3327	19	NIC	ENSMUSG00000053510.13	novel	3784	33	NA	NA	39	3050	intron_retention	FALSE	canonical	1	40	junction_2	172.130118740962	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAGATAAAGTAGAGAAAG	9979	False	NA	NA	False	NA	NA	NA	108857890	108904913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108858362_108870706_108871038_108873848_108874894_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793
20177	chrX	-	2340	13	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	441.559735483207	14	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	NA	False	NA	NA	NA	93585629	93579079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582582_93583515_93584154_93584856_93584931_93585497
20178	chr11	+	2789	17	NIC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	-16	-946	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	513	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	NA	False	NA	NA	NA	43324554	43337862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
20179	chr7	+	2922	18	FSM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	-101	1	-17	0	multi-exon	FALSE	canonical	3	860	junction_1	78.9623448430591	471	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGGCCTCTCCTATCC	2711	False	NA	NA	False	NA	NA	NA	3648249	3664107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
20180	chr8	-	2386	8	NIC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	3	-4	intron_retention	FALSE	canonical	3	448	junction_3	29.242825737997	60	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAAATTTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	108151670	108139124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_108139816_108142737_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
20181	chr5	+	3425	11	NIC	ENSMUSG00000041264.17	novel	3827	10	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	144.908384850567	50	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121378	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_149121617_149122294_149122472_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
20182	chr8	+	4244	32	NIC	ENSMUSG00000034330.11	novel	4298	33	NA	NA	-23	-5	combination_of_known_splicesites	TRUE	canonical	1	2	junction_20	38.7412774245098	310	37	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGCGTTCTGTACCTGA	NA	False	NA	NA	False	NA	NA	NA	118225006	118361876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_118225169_118230873_118231113_118282713_118282858_118284041_118284136_118284807_118284856_118293540_118293626_118294902_118294987_118300079_118300124_118300655_118300729_118304561_118304664_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
20183	chr19	-	3023	20	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	106	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGCGCAAGAAATTCGCGC	NA	False	NA	NA	False	NA	NA	NA	38956721	38919410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38919519_38919833_38919958_38923859_38923979_38926847_38926926_38929036_38929139_38932155_38932384_38933832_38934018_38935168_38935311_38938629_38938827_38940276_38940374_38941984_38942147_38943132_38943273_38943355_38943490_38945471_38945561_38945639_38945762_38947487_38947604_38948111_38948273_38953040_38953136_38953848_38953927_38956175
20184	chr4	+	4989	26	NNC	ENSMUSG00000042489.16	novel	5027	26	NA	NA	0	-23	intron_retention	FALSE	canonical	1	1	junction_8	29.2086562511869	2	73	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCATTGCCTTGTGGGCA	NA	False	NA	NA	False	NA	NA	NA	126450797	126487673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126459963_126460069_126460257_126466071_126466264_126466928_126467141_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444
20185	chr18	+	2385	11	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	89	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	427.439305632975	6	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTCTTTATAATTATGTT	6432	False	NA	-90	True	NA	NA	NA	77126250	77241121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217802_77232728_77232839_77237756_77237795_77240310
20186	chr5	+	2304	14	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	22	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	209.00813947515	260	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAACCTAAGACTTTAGT	NA	False	NA	NA	False	NA	NA	NA	64250314	64285711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269495_64273656_64273777_64285119
20187	chr9	+	1038	4	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAACCAAGGCATCTAAAA	NA	False	NA	NA	False	NA	NA	NA	78385734	78387042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386816_78386904
20188	chr2	-	2769	6	NNC	ENSMUSG00000017144.9	novel	2828	5	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	202.262799347779	356	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGGGATGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	51039119	51020450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_51021149_51021202_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
20190	chr7	-	1008	3	Antisense	novelGene_ENSMUSG00000077575.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	90	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCGGCACACAAAGCAACT	NA	False	NA	NA	False	NA	NA	NA	109121563	109119123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109119201_109119674_109119850_109120807
20192	chr2	+	2246	17	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-120	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	779.98431224208	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATGGAGCCTTGCATG	NA	False	NA	NA	False	NA	NA	NA	157121225	157167978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131451_157131544_157132456_157132633_157136072_157136149_157137173_157137311_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
20193	chr7	-	3684	20	NIC	ENSMUSG00000030528.13	novel	4598	22	NA	NA	25	1	combination_of_known_splicesites	FALSE	canonical	3	7	junction_19	99.5908805579342	2	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTAGTGGCCATTGTTTC	NA	False	NA	NA	False	NA	NA	NA	80164415	80104838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80164336
20194	chr18	+	4850	32	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	19808	-6	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	16.1479888600645	117	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATTATGATGTTTTAT	5010	False	NA	NA	False	NA	NA	NA	12657063	12716064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12657178_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
20195	chr7	+	1171	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	465	337	0	-149	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGGTACTTGTGTAGTG	NA	False	NA	NA	False	NA	NA	NA	46497019	46504713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
20198	chr12	-	2715	5	NNC	ENSMUSG00000062929.9	novel	2940	4	NA	NA	6	-99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	128.696348044535	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAAGCTATACGGTGCT	NA	False	NA	NA	False	NA	NA	NA	54909577	54905700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_54908023_54908121_54908199_54908310_54908409_54908449_54908619_54909528
20199	chr11	+	3212	7	NNC	ENSMUSG00000042436.13	novel	1722	6	NA	NA	3301	5338	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGGGACCACGCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	61379642	61385064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_61380099_61380193_61380315_61380665_61381331_61381433_61382513_61383729_61384014_61384333_61384783_61384906
20200	chr19	-	2987	10	Fusion	ENSMUSG00000024667.13_ENSMUSG00000024668.9	novel	935	6	NA	NA	8077	8620	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	19	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCGGCGGCGTCACACGC	693	False	NA	NA	False	NA	NA	NA	10525023	10502608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_10502690_10503310_10503423_10509142_10509360_10509618_10509702_10510184_10510287_10510655_10510803_10512467_10512879_10514158_10514273_10516975_10517128_10523455
20201	chr13	+	1955	14	Fusion	ENSMUSG00000021361.8_ENSMUSG00000038683.17	novel	1722	10	NA	NA	-2	-4	multi-exon	FALSE	canonical	0	0	junction_10	180.550079925063	3	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTGGTGTCGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	41154739	41176058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040_41166222_41171181_41171259_41171831_41171934_41174594_41174683_41175581
20202	chrX	-	2875	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	30	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	7	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGAGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	149800288	149766138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766813_149768774_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
20203	chr10	+	2422	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	279.30004009433	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCATAAATTGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872003_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
20204	chr11	+	3397	24	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	-105	30189	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	112.480807016441	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTGTCATAATTTGT	2039	False	NA	NA	False	NA	NA	NA	87018025	87141698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87018321_87020541_87020644_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
20205	chr4	+	5132	24	Antisense	novelGene_ENSMUSG00000028649.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAGGCAATGACAATAAAAA	9679	False	NA	NA	False	NA	NA	NA	123243535	123276679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_123244939_123245614_123245743_123248846_123249061_123254702_123254837_123259065_123259143_123260089_123260243_123261667_123261831_123263597_123263761_123264377_123264502_123265566_123265752_123266140_123266283_123268102_123268236_123268523_123268718_123270161_123270324_123270847_123271020_123271892_123272011_123272138_123272348_123272451_123272607_123274210_123274378_123275014_123275148_123275556_123275754_123275892_123276045_123276133_123276312_123276403
20206	chr9	-	1587	3	NNC	ENSMUSG00000110834.2	novel	461	4	NA	NA	10642	1819	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	36.5	1	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	124034127	124031168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_124032567_124033755_124033817_124033999
20208	chr19	-	2080	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	48	685	48	20	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	168	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGACTTTCATCCTTC	9077	False	NA	NA	False	NA	NA	NA	8700685	8684930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
20209	chr7	-	2475	1	FSM	ENSMUSG00000056216.10	ENSMUST00000205752.2	1610	1	1583	-2448	1583	-1026	mono-exon	FALSE	NA	NA	NA	NA	NA	112	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTTTTTCTTCGTGGGTT	NA	False	NA	NA	False	NA	NA	NA	34749347	34746872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_34746900_34749300
20210	chr4	+	3912	11	NNC	ENSMUSG00000028683.15	novel	3754	10	NA	NA	0	312	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_10	193.1	43	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAATTTTGATGATTGTCT	NA	False	NA	NA	False	NA	NA	NA	116876604	116930769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116928138
20211	chr10	+	3818	21	NNC	ENSMUSG00000001150.8	novel	6427	29	NA	NA	-165	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	76.6028067370902	2	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCAGAGCCGCCTTAGTT	NA	False	NA	NA	False	NA	NA	NA	76316786	76351685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336966_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344230_76351449
20212	chr17	-	2459	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	-1	-2	intron_retention	FALSE	non_canonical	0	0	junction_12	499.910221531663	2	82	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGTGGCTTGCCTTTTT	5766	False	NA	NA	False	NA	NA	NA	33904367	33865214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
20213	chr15	+	1342	13	ISM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	8	6632	8	2744	5prime_fragment	FALSE	canonical	3	1573	junction_6	133.559885652675	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCCCGGCCACGCATCC	NA	False	NA	NA	False	NA	NA	NA	84076449	84094836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684
20214	chr14	+	2291	16	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	110.374997168743	302	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGGAAATGTCTTTCT	2	True	NA	NA	False	NA	NA	NA	25842606	25887213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873128_25873188_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
20215	chr9	-	966	1	NIC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	-207	-966	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTCGAGGAAATACAGATAA	NA	False	NA	NA	False	NA	NA	NA	89978162	89977196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89977200_89978200
20218	chr5	-	2364	8	NNC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-19	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	388.442993479962	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAATAAAATCTCAG	NA	False	NA	NA	False	NA	NA	NA	100186773	100181449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185775_100186578
20219	chr9	+	3396	19	NNC	ENSMUSG00000033335.18	novel	3502	21	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	225.510340295621	1	77	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGCCCTACTGGTGGCT	5882	False	NA	NA	False	NA	NA	NA	21336243	21418417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21336553_21376877_21377028_21378827_21379032_21382636_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
20220	chr17	+	2486	8	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	16	9	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	219.15347338785	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAAATGTTTTAAGTT	5638	False	NA	NA	False	NA	NA	NA	34128487	34134501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132779_34133037_34134316
20221	chr9	-	1597	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5015.73746180103	66	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387688_78387917_78387971_78388920
20222	chr8	-	2541	8	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	182.807024381628	278	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTGTGACTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	40964761	40945581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40946242_40946280_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
20223	chr7	-	1933	18	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	475.716782074592	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGGGGCTCAGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	33929712	33901584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926584_33928345_33928422_33928707_33928799_33929516
20224	chr7	+	3961	6	FSM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	36	7	12	-7	multi-exon	FALSE	canonical	3	115	junction_1	46.5403051128804	1	125	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTACCTTGGGGTAATG	NA	False	NA	NA	False	NA	NA	NA	41248720	41277950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_41248825_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
20225	chr17	+	3135	9	NNC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	-4	-3366	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	143.775649885507	26	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTCAGAAACATTTAGGA	NA	False	NA	NA	False	NA	NA	NA	17594847	17611795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17594933_17597980_17598120_17598744_17598862_17600905_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229
20226	chr7	+	2160	9	NNC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	356.135836970951	11	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTAGGGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896248_43896671_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036_43901071_43901137
20229	chr7	-	1837	17	ISM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	962	803	-377	26	3prime_fragment	FALSE	canonical	3	1600	junction_15	170.801374043068	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTCAGTACTTTTATCT	NA	False	NA	NA	False	NA	NA	NA	33928799	33901557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707
20230	chr7	-	3332	12	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	93.7140895410738	4	97	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9609	False	NA	NA	False	NA	NA	NA	3218926	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3206105_3206215_3207740_3207912_3208072_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
20232	chr6	+	2195	11	NNC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	34	577	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	749.626980571004	33	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTGCTGTACTGAAAAA	571	False	NA	NA	False	NA	NA	NA	88061497	88080946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346_88080738_88080801
20233	chr8	+	2641	19	NNC	ENSMUSG00000031753.17	novel	2737	19	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	97.8581740184346	746	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATGCCATTGTGTTGGGT	9622	False	NA	NA	False	NA	NA	NA	111573659	111608855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580398_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
20235	chr16	-	2311	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	22	0	1	0	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	384	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	NA	NA	NA	16929099	16904418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
20236	chr5	-	5298	4	NIC	ENSMUSG00000097772.8	novel	626	5	NA	NA	0	-2	intron_retention	FALSE	canonical	3	343	junction_3	14.0554457615387	18	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATTAGAATGTTGTG	NA	False	NA	NA	False	NA	NA	NA	100577374	100568702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100568832_100569826_100574664_100576955_100577098_100577184
20237	chr15	-	3940	30	ISM	ENSMUSG00000022565.16	ENSMUST00000071869.12	14917	32	144	11976	144	3661	5prime_fragment	TRUE	canonical	2	21	junction_29	9.92420742349444	11	22	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATCAGTGAGACCCTTC	NA	False	NA	NA	False	NA	NA	NA	76093221	76067149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76067209_76067290_76067396_76067561_76067646_76067722_76068080_76068166_76068306_76069510_76069690_76069808_76069967_76070053_76070238_76070340_76070468_76070559_76070715_76070810_76070964_76071836_76071963_76072178_76072275_76072372_76072478_76072663_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078950_76079013_76093164
20238	chr12	+	3483	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	-1	771	combination_of_known_junctions	TRUE	canonical	3	188	junction_5	23.7533623350932	493	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGATGGCAGTGTTAATG	NA	False	NA	NA	False	NA	NA	NA	8258143	8336530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
20239	chr6	-	3253	19	NNC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_18	110.518586783814	11	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	NA	False	NA	NA	NA	39354609	39312918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39349012_39349072_39349780_39349862_39351928_39352101_39354552
20240	chr1	-	2425	5	Antisense	novelGene_ENSMUSG00000066652.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	16	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGGCTGGCACTGGCC	7771	False	NA	NA	False	NA	NA	NA	180726664	180720672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180720997_180721697_180721733_180721779_180721943_180722155_180722401_180725006
20241	chr4	+	3177	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6_ENSMUSG00000078496.10	novel	585	4	NA	NA	13	2546	multi-exon	TRUE	non_canonical	0	0	junction_1	163.915035579073	1	165	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACTAACTCCAATAAAGC	4123	False	NA	NA	False	NA	NA	NA	147314753	147600489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314880_147316802_147316901_147337800_147337859_147413438_147413566_147596801_147597429_147597511_147598217_147599053
20242	chr1	+	3824	3	NNC	ENSMUSG00000079144.8	novel	705	2	NA	NA	10	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1.5	52	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATATAAGCAGTTAATGT	977	False	NA	NA	False	NA	NA	NA	192855903	192860144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_192856406_192856552_192859053_192859322
20243	chr3	+	3294	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	-1	8	-1	-8	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	298	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCATACTTTGTATGCCT	NA	False	NA	NA	False	NA	NA	NA	116306717	116343622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
20244	chr14	+	2405	18	Antisense	novelGene_ENSMUSG00000037544.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCCGCTGCCAGCCGC	3816	False	NA	NA	False	NA	NA	NA	47625240	47655659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_47625401_47628021_47628119_47629177_47629235_47631591_47631775_47633211_47633432_47635874_47635971_47636979_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645373_47647768_47647836_47648901_47649025_47649115_47649203_47650436_47650497_47651101_47651296_47653791_47654028_47655564
20245	chr6	-	1718	12	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-14	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2093.46237780208	1	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGAAATTGTGTAATTA	NA	False	NA	NA	False	NA	NA	NA	51446888	51439748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439935_51439981_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
20246	chr14	+	2133	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	98	-2	-3	2	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	2897	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGTTATGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73790202	73833584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
20247	chr10	+	3403	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	9	7	intron_retention	FALSE	canonical	3	348	junction_6	43.3545773496021	2	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATTGAACCTATT	NA	False	NA	NA	False	NA	NA	NA	93289281	93320687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
20248	chr4	+	2321	16	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-23	126	intron_retention	FALSE	canonical	3	774	junction_2	76.4394895034991	9	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCTCTATGTCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	155954048	155973316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
20249	chr7	+	1753	4	NNC	ENSMUSG00000038503.16	novel	489	4	NA	NA	-75	1101	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	621.56951877217	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATAGGTATATTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	83541462	83548389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544737_83544971_83546957_83547140_83547272
20250	chr7	+	2019	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	-30	0	-30	0	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	48	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	140461850	140478555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
20251	chr12	+	2674	22	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	62.5021722978499	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	17398461	17480096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115_17479512_17479855
20252	chr15	+	1838	14	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	0	14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	285.817275182763	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGTACATTAAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	80832704	80853334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862_80853011_80853056
20253	chr4	-	3653	14	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	27	-19	intron_retention	FALSE	canonical	0	0	junction_6	328.95720122333	1	71	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGACTGATTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	155845498	155825116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833666_155834588_155834714_155834929_155836050_155838021_155838094_155838338_155838505_155839213_155839284_155839386_155839500_155840135_155840196_155840517_155840620_155841548_155841626_155845258
20255	chr4	-	3348	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	88	6	88	-6	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	288	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAGCTGTTTGAGTGAC	-2	True	NA	NA	False	NA	NA	NA	41314801	41291305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
20256	chr15	-	1846	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	7	0	7	0	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	2	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCTTGATAGAGGAT	NA	False	NA	NA	False	NA	NA	NA	31601943	31590945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
20257	chr4	+	2652	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	-1	0	1	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	1228	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGCCATTGTGCT	-10	True	NA	NA	False	NA	NA	NA	21879672	21912163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
20259	chr9	+	2830	8	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	123	1	intron_retention	FALSE	canonical	3	5755	junction_2	193.871722791023	6	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGTTGTCCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	108766082	108778688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108766225_108771151_108771239_108773111_108773957_108774427_108774508_108776005_108776122_108776403_108777702_108778006_108778083_108778502
20260	chr9	+	3255	14	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	-1	-39	intron_retention	FALSE	canonical	3	271	junction_2	36.9687217865663	109	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGAATCTTGAAGCTAAAA	NA	False	NA	NA	False	NA	NA	NA	107828164	107849430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
20262	chr2	-	4328	2	ISM	ENSMUSG00000026669.15	ENSMUST00000125851.2	866	4	2941	-2598	2570	-358	3prime_fragment	FALSE	canonical	3	704	junction_1	0	33	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTCCCTGTGGCCTGT	NA	False	NA	NA	False	NA	NA	NA	5014585	5009210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_5012244_5013290
20263	chr1	-	2307	10	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	348.182902126646	4	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTATGCTTTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	177624068	177590748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603221_177611614_177611684_177612461_177612565_177623777
20265	chr8	+	2577	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	667.584308229118	1	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTGAATACAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	75836196	75854327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836833_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844274_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851432_75851572_75852864_75852993_75853850
20266	chr13	-	3554	10	NNC	ENSMUSG00000032999.11	novel	3527	10	NA	NA	-78	2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	16.8354417454795	148	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTACTGACTTCTAATCTC	NA	False	NA	NA	False	NA	NA	NA	65353608	65324927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338744_65341799_65343370_65346982_65347285_65353433
20267	chr8	+	3868	7	NNC	ENSMUSG00000031813.9	novel	1062	9	NA	NA	2	-7	intron_retention	FALSE	canonical	0	0	junction_4	150.696899621577	19	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCACTGTGTGGAGTGTA	NA	False	NA	NA	False	NA	NA	NA	71995567	72000663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71995702_71995776_71997995_71998190_71998311_71998393_71998915_71999118_71999679_72000221_72000279_72000405
20268	chr7	+	2255	3	FSM	ENSMUSG00000059070.17	ENSMUST00000211325.2	502	3	-1050	-703	3	0	multi-exon	FALSE	canonical	3	8095	junction_2	104.5	61	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	5953	False	NA	NA	False	NA	NA	NA	45367525	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45368764_45368952_45369061_45369343
20269	chr16	-	1711	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	105	578	20	84	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTGGTACAATAAATGTG	NA	False	NA	NA	False	NA	NA	NA	87292656	87280791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
20270	chr11	+	3538	19	NIC	ENSMUSG00000020454.18	novel	2952	16	NA	NA	-63	0	combination_of_known_junctions	TRUE	canonical	3	81	junction_1	67.055647611094	347	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCTGGTACTGTGTTTA	4113	False	NA	NA	False	NA	NA	NA	3152931	3194586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_3152993_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3183987_3184060_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
20272	chr16	+	3425	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	22	0	22	0	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	460	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCTTGACTAAGCCCCT	1406	False	NA	NA	False	NA	NA	NA	17223871	17248691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
20273	chr14	-	2573	16	NNC	ENSMUSG00000022031.7	novel	2771	15	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	1	6	junction_1	140.355675181147	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAAAGAGTCGTCGTGT	3459	False	NA	NA	False	NA	NA	NA	65830509	65767905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65768186_65768383_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
20275	chr6	+	2376	7	ISM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	6919	0	6795	0	3prime_fragment	FALSE	canonical	3	779	junction_6	36.3363913086225	2	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	1814	False	NA	NA	False	NA	NA	NA	125115790	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
20276	chr11	-	1381	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	29	390	29	-390	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGGCCCACTTGGACGC	1876	False	NA	NA	False	NA	NA	NA	59119067	59102629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
20277	chr2	-	4921	5	ISM	ENSMUSG00000036093.8	ENSMUST00000036541.8	5239	6	8204	7	-4382	-7	3prime_fragment	FALSE	canonical	3	352	junction_4	36.0381742045848	173	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATATATATTCTTGGGG	1825	False	NA	NA	False	NA	NA	NA	52306709	52287969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_52292445_52294917_52295070_52302073_52302158_52306075_52306224_52306647
20279	chr5	-	4391	28	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	-6	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	99.9057717917808	2	186	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTGGTGCAGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	108777611	108717292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730112_108730535_108731016_108732097_108732259_108733236_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
20281	chr11	-	3184	14	NNC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	658	-7	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_13	145.022340658055	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCAATGGAGGCTGTTAA	NA	False	NA	NA	False	NA	NA	NA	100287917	100261451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100287817
20282	chr18	-	2252	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	45	-8	18	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	2168	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	NA	False	NA	NA	NA	38472011	38460602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
20283	chr11	+	2723	3	Antisense	novelGene_ENSMUSG00000035455.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCGTGTAGAGTAAGGG	6417	False	NA	NA	False	NA	NA	NA	11750545	11758979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_11753064_11756095_11756216_11758894
20286	chr2	+	3460	1	Genic_Genomic	ENSMUSG00000015932.9	novel	NA	NA	NA	NA	24697	152	mono-exon	FALSE	NA	NA	NA	NA	NA	7	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTCAGAACATGAACTCA	NA	False	NA	NA	False	NA	NA	NA	143781936	143785396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_143781900_143785400
20287	chr17	-	2700	8	NNC	ENSMUSG00000023971.10	novel	1195	7	NA	NA	22	560	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	196.556685493638	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTCTGGGTATTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	46985159	46976689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46978168_46978366_46979013_46980798_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
20288	chr14	-	4687	23	FSM	ENSMUSG00000021870.18	ENSMUST00000038522.10	4501	23	-189	3	-189	-3	multi-exon	FALSE	canonical	3	93	junction_11	43.2750190378615	168	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGCATGTTTGAGTT	NA	False	NA	NA	False	NA	NA	NA	26255084	26134332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26180564_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482
20289	chr12	-	2329	19	Antisense	novelGene_ENSMUSG00000070166.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	27	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTACTGCAAACCAAAGAA	8838	False	NA	NA	False	NA	NA	NA	21364773	21336431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21336546_21340248_21340312_21341750_21341850_21343226_21343352_21345026_21345207_21346645_21346738_21347789_21347937_21350034_21350217_21351414_21351574_21352357_21352506_21355302_21355457_21356770_21356883_21357993_21358092_21358903_21358998_21360195_21360284_21360489_21360668_21362294_21362369_21363767_21363864_21364647
20290	chr11	+	2686	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	51	3966	18	-3966	multi-exon	FALSE	canonical	3	6361	junction_7	586.595613027527	2	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAAGAAAACTTCATCTG	NA	False	NA	NA	False	NA	NA	NA	55360561	55391698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
20291	chr7	+	1351	5	Antisense	novelGene_ENSMUSG00000007891.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCCAAAGATCTGTTTCT	5261	False	NA	NA	False	NA	NA	NA	141929652	141934663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_141930478_141930571_141930669_141930762_141930906_141931067_141931192_141934501
20292	chr8	-	1993	11	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.33378808507	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCACTGTCTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	96615017	96590766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591171_96591544_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
20295	chr10	-	1964	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-10	-178	at_least_one_novel_splicesite	FALSE	canonical	2	66	junction_5	578.73089994008	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358281	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354712_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
20296	chr3	-	2788	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	139	30	69	-30	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	1	95	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGATTAAACTTTGTTTT	2855	False	NA	NA	False	NA	NA	NA	65299905	65287105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
20297	chr8	-	5070	14	FSM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	40	-3277	14	8	multi-exon	FALSE	canonical	3	92	junction_6	19.6766764885012	205	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAATAGTGTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	47070203	47028620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
20298	chr1	+	3089	25	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	14	44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	322.176428438933	1	122	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCCAAGTCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	85992376	86066917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058425_86060439_86060523_86061359_86061507_86064684_86064839_86066801
20299	chr3	-	1213	2	FSM	ENSMUSG00000005625.16	ENSMUST00000147960.2	903	2	-82	-228	-82	-3	multi-exon	FALSE	canonical	3	2127	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGCTTCAAATAGTGATA	NA	False	NA	NA	False	NA	NA	NA	94941309	94940010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_94940858_94940943
20300	chrX	-	3678	4	FSM	ENSMUSG00000025264.13	ENSMUST00000166010.2	1318	4	27	-2387	7	0	multi-exon	FALSE	canonical	3	44	junction_3	140.42158745087	14	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCATTTTCCTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	149879512	149870089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879424
20301	chr3	-	3337	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	27	-1333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	785	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACATCGTGTAGTACGG	NA	False	NA	NA	False	NA	NA	NA	53771224	53762129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764305_53764497_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
20302	chr17	+	2016	10	NIC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-11	-3	combination_of_known_splicesites	FALSE	canonical	1	26	junction_1	584.347900771281	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4860	False	NA	NA	False	NA	NA	NA	87979956	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_87980235_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
20303	chr6	-	3089	20	NNC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	200.43064439675	1	133	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCAGTTCTTTGGGG	7907	False	NA	NA	False	NA	NA	NA	124806396	124791981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802138_124803261_124803388_124806247
20304	chr10	-	1792	10	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-10	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	700.117150690767	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATACATTTTAATG	NA	False	NA	NA	False	NA	NA	NA	93725656	93696791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93715960_93725421
20305	chr9	+	4060	1	ISM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	41170	10	17564	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	166	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAATAAGTCTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	30983111	30987171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_30983100_30987200
20306	chr7	+	2099	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	88	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACTTGCTGTGAGTAT	286	False	NA	NA	False	NA	NA	NA	44465722	44480230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478072_44478477
20307	chr6	+	2187	8	ISM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	663	6	322	-6	3prime_fragment	FALSE	canonical	3	738	junction_7	88.0727899327063	9	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTCTTTGTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	106746789	106759429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
20308	chr1	+	2505	21	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	143.86243429054	31	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	45834660	45862779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859307_45861676_45861755_45862042_45862135_45862467
20309	chrX	-	3391	8	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.6358264689303	15	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTCTGTATCATATTT	NA	False	NA	NA	False	NA	NA	NA	156381632	156330819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333187_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
20310	chr7	-	1976	17	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-7	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	625.228758135772	2	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTGAGTCAGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	33929695	33901561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901963_33902057_33902168_33903443_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
20311	chr14	-	4226	20	NIC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	97	0	intron_retention	FALSE	canonical	0	0	junction_7	39.4028838743781	9	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	70391163	70375616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
20314	chr2	+	3113	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	30	11	30	-11	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	16	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAACTAAATGTGGCTCC	NA	False	NA	NA	False	NA	NA	NA	120439893	120452030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
20315	chr9	+	2478	8	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	151.266085331209	124	19	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20927276	20940110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937655_20937712_20937896_20938373_20938632_20938727_20938977_20939066
20316	chr8	-	2977	19	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	9	-183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	420.344072027772	1	88	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80438270	80410273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80410466_80410993_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415942_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
20317	chr10	-	2314	10	ISM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	10291	9	-3731	-4	3prime_fragment	FALSE	canonical	3	1559	junction_9	224.635012606871	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCCGAGCCCTCTCCTG	8093	False	NA	NA	False	NA	NA	NA	127137364	127132098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278
20318	chr1	+	2478	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-23	92	-23	-92	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	33	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTAGTTTAAAAGTAATA	NA	False	NA	NA	False	NA	NA	NA	4928013	4968036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
20320	chr1	-	5122	29	NNC	ENSMUSG00000005501.15	novel	3977	32	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	14.520218135203	9	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCATATACTGCCTGC	NA	False	NA	NA	False	NA	NA	NA	87936274	87872840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_87874430_87876223_87876319_87877653_87877750_87877880_87878092_87879364_87879431_87880061_87880181_87881872_87881968_87884932_87885057_87887510_87887586_87890145_87890211_87893023_87893065_87894905_87894993_87903529_87903654_87906032_87906356_87907736_87907808_87908692_87908778_87909730_87909903_87911475_87911558_87913623_87913922_87916606_87916715_87917783_87917880_87921895_87922025_87923432_87923577_87925534_87925682_87927461_87927627_87930130_87930245_87931968_87932037_87934946_87935165_87936159
20321	chr16	+	2473	17	NNC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	23	0	at_least_one_novel_splicesite	TRUE	non_canonical	2	30	junction_1	733.108724776721	1289	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	NA	False	NA	NA	NA	20317589	20328073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20317710_20317767_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
20322	chr13	+	2328	9	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	77	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGGAGTCTGCCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	100915251	100923007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916296_100916530_100916639_100917278_100917423_100917663_100917906_100918137_100918291_100919971_100920154_100921962_100922125_100922236_100922412_100922889
20323	chr19	-	2749	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	6	2	-3	1	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	715	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTCTGACCTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	46384180	46365251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
20324	chr2	+	3189	6	NNC	ENSMUSG00000005804.15	novel	3484	5	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	56.2473110468403	3544	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCATTGTTTATCAGAC	8292	False	NA	NA	False	NA	NA	NA	122580445	122591391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_122580625_122584508_122584651_122586045_122586134_122587974_122588062_122588430_122590480_122590747
20325	chr3	+	2715	6	FSM	ENSMUSG00000005687.15	ENSMUST00000139489.8	2717	6	6	-4	6	4	multi-exon	FALSE	canonical	3	3472	junction_4	182.433111029769	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGTGGCTATAGTGAA	5029	False	NA	NA	False	NA	NA	NA	103079070	103086147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103084736_103085670
20326	chr4	+	2203	14	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	10	-371	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	579.433083474574	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGGAGTCTCGTG	865	False	NA	NA	False	NA	NA	NA	129083704	129113029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109136_129110535_129110613_129112223_129112405_129112445
20327	chr15	-	4074	17	NNC	ENSMUSG00000039828.8	novel	2126	18	NA	NA	19	-2	intron_retention	TRUE	canonical	3	4	junction_13	103.466914246777	1	50	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGTCCTTTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	8128656	7902537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108757_8111945_8112067_8123159_8123244_8128439_8128506_8128602
20328	chr17	-	3286	17	FSM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	-3	0	-3	0	multi-exon	TRUE	canonical	3	178	junction_12	29.2883695986991	403	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTCCGTGTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	57138016	57082896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
20329	chr11	-	3005	14	NNC	ENSMUSG00000018068.14	novel	3414	12	NA	NA	3	1040	intron_retention	FALSE	non_canonical	0	0	junction_1	52.1597455252078	1	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTGAAGTTTTGCATGT	NA	False	NA	NA	False	NA	NA	NA	86148388	86124457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86125287_86125392_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148029
20330	chr13	+	2072	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	756.942144420563	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCTTGGTATTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	3588140	3615818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588323_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612001_3614581_3614685_3614858_3614914_3614995
20331	chr3	+	2425	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	-13	17	-13	5	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	3	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACTGACAAAATCAATTG	NA	False	NA	NA	False	NA	NA	NA	122068023	122078903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
20332	chr10	-	2627	12	NNC	ENSMUSG00000040354.15	novel	574	3	NA	NA	-42	-5108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	637.549038788001	3	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTCTAATCCCCTAAT	NA	False	NA	NA	False	NA	NA	NA	127147589	127137325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127137950_127138137_127138751_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
20333	chr1	-	2843	8	NIC	ENSMUSG00000033159.15	novel	3669	9	NA	NA	-19	-21	intron_retention	FALSE	canonical	3	100	junction_7	21.7048851832099	3	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATAAACAGTTTCTGTTG	9348	False	NA	NA	False	NA	NA	NA	75119301	75112435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701
20334	chr2	+	3738	14	FSM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	-13	-1256	6	1256	multi-exon	FALSE	canonical	3	20	junction_5	4.46419019339905	108	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAAGTACTTGAGTATGA	1008	False	NA	NA	False	NA	NA	NA	3425173	3456385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
20335	chr2	-	2657	4	ISM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	583	1	566	-1	3prime_fragment	FALSE	canonical	3	429	junction_2	57.0691588240872	33	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCTGGGATGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	51038540	51020450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235
20336	chr7	-	3478	8	NNC	ENSMUSG00000011382.9	novel	5323	7	NA	NA	3	-1971	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	14.3014199380655	29	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGCTCTTGTCTTTAATC	NA	False	NA	NA	False	NA	NA	NA	45138226	45122381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45131995_45132125_45136164_45136329_45137483_45137596_45138097
20337	chr19	+	2673	10	NNC	ENSMUSG00000024785.8	novel	1803	9	NA	NA	40	2225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	123.335535515875	1213	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACTCGGAAATGCCTCT	NA	False	NA	NA	False	NA	NA	NA	29078814	29123554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541_29121822_29123222
20338	chr16	-	2830	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	0	28	0	-28	multi-exon	FALSE	canonical	3	300	junction_3	44.5146667465405	1134	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATAAAGTTTGTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	8490019	8476471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
20340	chr15	+	1639	14	NNC	ENSMUSG00000097057.2	novel	4343	2	NA	NA	-2000	3713	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTCTTAGTCAGCGGAA	3600	False	NA	NA	False	NA	NA	NA	77843873	77855039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_77843994_77844151_77844297_77845813_77845944_77846045_77846134_77846640_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852424_77852658_77852792_77854884
20341	chr8	+	2131	17	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	308.735525976523	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	107620258	107649720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630989_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
20342	chr7	-	2350	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	188	1302	-4	-4	multi-exon	FALSE	canonical	3	346	junction_6	24.644133852366	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATTGTATCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	109585470	109572695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
20343	chr2	+	2855	15	NIC	ENSMUSG00000027255.15	novel	3068	16	NA	NA	-20	-2	intron_retention	FALSE	canonical	3	197	junction_9	19.8341336373147	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTCCTCTCCGTCCTGC	5801	False	NA	NA	False	NA	NA	NA	91095617	91107274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
20344	chr10	-	2490	2	Antisense	novelGene_ENSMUSG00000060843.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACAAGTCTGTTTCCAT	1976	False	NA	NA	False	NA	NA	NA	64398046	64375293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_64377183_64397445
20346	chr7	-	2121	6	FSM	ENSMUSG00000070436.13	ENSMUST00000207849.2	2128	6	-26	33	-26	-33	multi-exon	FALSE	canonical	3	30	junction_5	741.154936568596	2131	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002347	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002259
20347	chr12	-	1336	5	ISM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	-4	2680	1	673	5prime_fragment	FALSE	canonical	3	134	junction_1	63.4448579476698	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAACAACAACAAATGGTG	NA	False	NA	NA	False	NA	NA	NA	87490602	87477526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
20349	chrX	+	3496	22	NIC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	0	-12	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	70.5175554282958	230	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATGACCACCACACCTAG	NA	False	NA	NA	False	NA	NA	NA	20570172	20586764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20570359_20573150_20573222_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
20350	chr13	+	3681	11	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	2271	39849	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	498	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAGGACGTCTCAGGCGA	NA	False	NA	NA	False	NA	NA	NA	59782809	59823585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59785216_59786118_59786225_59787932_59788156_59790056_59790201_59792905_59793040_59797378_59797480_59798509_59798564_59812010_59812192_59813340_59813489_59822772_59822915_59823543
20351	chr18	-	2099	14	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	-3	158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	246.985350402832	11	14	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAACTTTTGACATTTCT	-3	True	NA	NA	False	NA	NA	NA	10030084	9995435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001845_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
20352	chr3	+	1793	12	NNC	ENSMUSG00000001416.14	novel	1804	12	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1137.84555735684	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGAGACCGTTGTCAT	3844	False	NA	NA	False	NA	NA	NA	88204462	88229066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204567_88206653_88206711_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225662_88225834_88227766_88228013_88228320_88228453_88228750
20353	chr19	+	3821	7	NNC	ENSMUSG00000024780.8	novel	5179	7	NA	NA	-24	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	86.9188638264956	2	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTGTAGTTATGATT	3930	False	NA	NA	False	NA	NA	NA	28967860	28997632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_28968070_28972440_28972723_28984371_28984488_28984972_28985096_28989288_28989454_28993405_28995914_28997214
20354	chr3	+	3741	9	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	98	-10	intron_retention	FALSE	canonical	3	130	junction_1	25.0371598828621	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTTCCTGAGATTTGC	NA	False	NA	NA	False	NA	NA	NA	95190352	95203462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95202298_95202583_95202737_95202961
20355	chr13	-	2460	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	-13	-145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	259.333452997777	1	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGACTTACATTTTG	NA	False	NA	NA	False	NA	NA	NA	9046099	9022660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035751_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041746_9041888_9041967_9042072_9042680_9042852_9045984
20356	chr11	+	2997	10	NNC	ENSMUSG00000059248.14	novel	778	7	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	196.831569283656	1	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117217183	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117217386_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
20357	chr12	-	3971	3	Antisense	novelGene_ENSMUSG00000042063.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCGCGTACGGGATGTGG	NA	False	NA	NA	False	NA	NA	NA	116026270	116011388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_116011486_116018340_116018468_116022523
20358	chr11	-	1266	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	-56	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6479.01620523165	14	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113133	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102856_33105998_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
20359	chr9	-	3015	19	NIC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_16	389.752327181263	2	73	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64080197	64044425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071995_64072644_64072741_64075894_64075947_64080099
20360	chr4	+	4736	16	FSM	ENSMUSG00000028927.7	ENSMUST00000030765.7	4774	16	30	8	30	-8	multi-exon	FALSE	canonical	3	23	junction_7	9.97463449622759	105	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGCTACGCGGCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	140633684	140679889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_140633861_140644883_140645068_140646618_140646692_140651624_140651687_140653446_140653565_140654403_140654530_140659375_140659555_140660057_140660162_140660483_140660596_140661926_140662035_140663830_140663983_140665230_140665376_140671752_140671847_140673988_140674075_140676522_140676652_140677001
20361	chr2	+	2186	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	6	1	6	0	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	1849	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	-3	True	NA	NA	False	NA	NA	NA	13578768	13587636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
20363	chr11	-	2843	3	NIC	ENSMUSG00000005198.16	novel	5799	28	NA	NA	-151	-8	intron_retention	FALSE	canonical	3	403	junction_2	5	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAAGTCTGTATGTGT	3013	False	NA	NA	False	NA	NA	NA	69628325	69624830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69627152_69627600_69627805_69628007
20365	chr4	-	2295	10	NNC	ENSMUSG00000028436.9	novel	3442	9	NA	NA	122	-946	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.720808298664	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACAGCCTAGATAAAGACA	1982	False	NA	NA	False	NA	NA	NA	41314767	41292245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41292325_41292403_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
20366	chr9	+	3509	27	FSM	ENSMUSG00000032481.18	ENSMUST00000197984.5	3538	27	24	5	24	-5	multi-exon	FALSE	canonical	3	1122	junction_24	83.6874645091864	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACATGCATAGTTCCTG	2526	False	NA	NA	False	NA	NA	NA	109961128	110064354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944
20367	chr15	-	2911	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	0	3	0	-3	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	3	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTGGCGTTGTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	35155952	34875644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
20369	chr11	+	1935	13	NNC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	4	-1	intron_retention	FALSE	canonical	3	4	junction_8	336.209125975023	261	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAAGGCTCCTTTCCTT	1428	False	NA	NA	False	NA	NA	NA	120675134	120679926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678481_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
20370	chr2	-	3404	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_23	186.534383931995	1	119	16	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGTTGTTCTAAATACTC	NA	False	NA	NA	False	NA	NA	NA	127673757	127643035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663857_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671593_127671658_127673639
20371	chr6	-	3536	6	NIC	ENSMUSG00000040669.15	novel	3612	14	NA	NA	0	2610	intron_retention	FALSE	canonical	3	372	junction_1	255.358258139423	10	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGGCAATAACTTAATAG	9107	False	NA	NA	False	NA	NA	NA	122316586	122299903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
20373	chr3	+	2488	13	NIC	ENSMUSG00000027998.12	novel	1851	15	NA	NA	2	3	intron_retention	FALSE	canonical	3	670	junction_6	43.6230698395038	32	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTTTATTTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	82962840	82979599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
20374	chr1	+	2521	4	NNC	ENSMUSG00000050565.17	novel	2589	3	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	76.8389368889382	25	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGGTTTTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	155916635	155929276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_155916749_155916820_155916881_155925186_155925298_155927039
20377	chr2	+	3337	8	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-9	0	intron_retention	FALSE	canonical	3	227	junction_5	21.7649784220956	120	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	25390861	25395483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
20378	chr9	-	2697	10	ISM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	46897	0	2987	0	3prime_fragment	FALSE	canonical	3	1185	junction_2	72.7391755130685	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	NA	False	NA	NA	False	NA	NA	NA	31076186	31060852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838
20379	chr9	+	3266	4	NNC	ENSMUSG00000004100.13	novel	1834	9	NA	NA	146	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	446.910132651595	16	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799726	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20800401_20800606_20800981_20801066_20802012_20802200
20380	chr16	-	2354	15	NNC	ENSMUSG00000052459.14	novel	3896	15	NA	NA	14	-1341	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_14	112.129662554071	12	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGTTTGTTGAGTAACCA	NA	False	NA	NA	False	NA	NA	NA	43959367	43907348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959319
20381	chr16	-	2081	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	12	0	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
20382	chr5	+	1892	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	73	3030	6	447	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	1993	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTGTTTATGAGTGATT	NA	False	NA	NA	False	NA	NA	NA	134611616	134627629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
20383	chr13	-	4666	29	FSM	ENSMUSG00000021585.11	ENSMUST00000222588.2	4765	29	95	4	8	-4	multi-exon	FALSE	canonical	3	102	junction_28	16.6207701385947	198	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAAGTTCTTGGCTATGT	NA	False	NA	NA	False	NA	NA	NA	74918760	74840490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
20384	chr6	-	3343	12	NNC	ENSMUSG00000038784.14	novel	3473	12	NA	NA	-10	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_11	80.200162815935	3	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCCTCGGGTGAGTCTTG	7666	False	NA	NA	False	NA	NA	NA	35110639	34999002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35029839_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35105746_35105845_35110436
20385	chr3	-	2840	15	NIC	ENSMUSG00000015697.15	novel	4622	22	NA	NA	-12	-4251	intron_retention	FALSE	canonical	3	141	junction_5	26.9375695462903	4	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAATCTGGACCACATTG	1743	False	NA	NA	False	NA	NA	NA	95264412	95235086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
20387	chr15	-	2265	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	59	-1	intron_retention	FALSE	canonical	3	334	junction_10	42.1835275907551	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAACTACACTGTCT	8725	False	NA	NA	False	NA	NA	NA	76500989	76496591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
20388	chr5	+	1236	3	Intergenic	novelGene_787	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	161	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTCTGGCGTCTGGGTA	NA	False	NA	NA	False	NA	NA	NA	104950505	104953412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104951338_104952170_104952309_104953146
20389	chrX	+	3344	26	NNC	ENSMUSG00000000037.18	novel	1894	3	NA	NA	14611	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	116.97764572772	1	101	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTCTTCAGTTATTTT	4642	False	NA	NA	False	NA	NA	NA	159921874	160039898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922109_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996241_159996321_159998175_159998260_160007456_160007541_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020487_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
20390	chr7	-	3482	13	FSM	ENSMUSG00000044465.20	ENSMUST00000122327.7	3521	13	41	-2	-5	0	multi-exon	FALSE	canonical	3	82	junction_12	109.388038905337	164	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCTCATTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	105049198	105027816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
20392	chr19	+	2601	5	FSM	ENSMUSG00000071653.10	ENSMUST00000185488.7	500	5	-29	-2072	-13	1737	multi-exon	FALSE	canonical	3	137	junction_2	1592.05511839258	295	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATCTTCCTTCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8866249	8869982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774
20395	chr17	+	2975	5	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-52	1771	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1434.74464191368	5	86	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTGTCCATTTGGAATTT	NA	False	NA	NA	False	NA	NA	NA	13226830	13236274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232488_13233912
20397	chr7	+	3020	8	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	7	269	intron_retention	FALSE	canonical	3	724	junction_5	68.8891449047982	6	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTGCTGTATTAGTG	NA	False	NA	NA	False	NA	NA	NA	63835213	63860906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63859778_63860585
20399	chr10	+	1444	12	Antisense	novelGene_ENSMUSG00002076354.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCGACATCTTCCTACTG	3242	False	NA	NA	False	NA	NA	NA	128394507	128401686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128394840_128394929_128394984_128395097_128395220_128395299_128395401_128395947_128396163_128396526_128396605_128396785_128396852_128398695_128398791_128398936_128399005_128399092_128399201_128399447_128399574_128401607
20401	chr9	+	5490	3	NNC	ENSMUSG00000079260.4	novel	2921	2	NA	NA	43	3924	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	20	55	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTCGGTGTCCATTCTT	NA	False	NA	NA	False	NA	NA	NA	114230215	114240268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114233588_114236525_114237836
20402	chr16	-	1863	8	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	-3	571	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	730.934012488299	8	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTTTTACAAAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067864_22071356_22071546_22073157_22073321_22073733_22073868_22084490
20403	chr1	-	3764	9	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	8	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.2294265253357	170	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACATTTGACTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	171854854	171828543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171829636_171831544_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
20404	chr6	+	4255	24	NNC	ENSMUSG00000030016.15	novel	4356	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	137.5298283508	1	168	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	83891352	83963853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930121_83930316_83930361_83931692_83931744_83935165_83935250_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953333_83956828_83956892_83958665_83958768_83960957_83961057_83961758_83961878_83963539
20405	chr1	-	1754	1	Intergenic	novelGene_398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAAAGAAACTTGTGT	NA	False	NA	NA	False	NA	NA	NA	86271426	86269672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_86269700_86271400
20406	chr15	-	1678	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	293	1375	-156	406	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	2482	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACGGTTCCTGAAGTATC	NA	False	NA	NA	False	NA	NA	NA	81283951	81249244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
20407	chr13	+	2869	7	NNC	ENSMUSG00000021395.12	novel	4434	6	NA	NA	545	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	357.82510470278	39	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTGTGAACTTTGT	NA	False	NA	NA	False	NA	NA	NA	51255460	51306584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_51255548_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997_51303931_51305473
20408	chr9	-	3793	16	FSM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	536	-108	536	108	multi-exon	FALSE	canonical	3	623	junction_10	54.7444974403821	377	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCTTGTCTCTTGCAG	NA	False	NA	NA	False	NA	NA	NA	115138953	115071540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_115073114_115075112_115075326_115077572_115077687_115079846_115080021_115080745_115080918_115081566_115081755_115082900_115083113_115083856_115084012_115085200_115085250_115086503_115086651_115087529_115087629_115095161_115095262_115096377_115096444_115105771_115106060_115109478_115109588_115138819
20409	chr5	+	4280	7	FSM	ENSMUSG00000029152.14	ENSMUST00000166823.5	3354	7	10	-936	-4	-115	multi-exon	FALSE	canonical	3	746	junction_1	115.10683443364	57	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAGAAAAGGTGTTACAT	NA	False	NA	NA	False	NA	NA	NA	73450145	73467644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
20410	chrX	+	1733	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	-8	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1877.6543451871	3	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATGTCCACTAAAATGGA	NA	False	NA	NA	False	NA	NA	NA	105230760	105247284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238113_105238237_105238383_105240459_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
20411	chr9	+	3230	20	NNC	ENSMUSG00000033335.18	novel	1772	12	NA	NA	1	-4	at_least_one_novel_splicesite	TRUE	canonical	2	9	junction_1	185.750331347128	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTACGTGTGTGGGCC	349	False	NA	NA	False	NA	NA	NA	21368403	21418430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21368462_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
20412	chr17	-	1790	7	NIC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-12	-950	intron_retention	FALSE	canonical	3	510	junction_2	41.6309847215855	10	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAAGAAGGCCCCTAC	NA	False	NA	NA	False	NA	NA	NA	57318300	57311354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57311573_57311665_57311820_57312359_57312545_57313985_57314907_57316687_57316761_57317975_57318023_57318108
20413	chr7	-	3644	6	FSM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	83	61	11	-61	multi-exon	FALSE	canonical	3	274	junction_2	12.1556571192182	1	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAATTTAATAAGTGGTC	2780	False	NA	NA	False	NA	NA	NA	141456141	141435380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
20414	chr11	-	1447	8	FSM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	-6	-3	4	3	multi-exon	FALSE	canonical	3	649	junction_5	59.12318513416	2426	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGGACTATGTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	43638815	43620832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
20415	chr15	-	2187	4	NNC	ENSMUSG00000062397.9	novel	4417	4	NA	NA	99	1598	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3122.70683862575	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTATTAAAGAAGATGTT	254	False	NA	NA	False	NA	NA	NA	37007547	36999273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_37001168_37002082_37002191_37003929_37004067_37007499
20416	chr16	-	2062	18	ISM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	320	5	-26	1	intron_retention	FALSE	canonical	3	368	junction_7	53.8835730660726	1787	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTGGGTCTGTGATC	NA	False	NA	NA	False	NA	NA	NA	18630402	18599201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054
20417	chr1	-	2430	7	ISM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	1392	-5	1392	5	3prime_fragment	FALSE	canonical	3	343	junction_5	37.0135110466435	11	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTTATGCTACTCTGG	NA	False	NA	NA	False	NA	NA	NA	13195995	13183675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389
20418	chr10	+	2379	13	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	85	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	280.260431959672	1	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7075	False	NA	NA	False	NA	NA	NA	60113534	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136371_60137522
20419	chrX	+	4151	18	NNC	ENSMUSG00000000838.18	novel	4409	17	NA	NA	-14	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	243.406732384793	377	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAAATACTAGTCTGAC	NA	False	NA	NA	False	NA	NA	NA	67722215	67761561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_67722286_67722430_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
20420	chr2	-	2472	6	NNC	ENSMUSG00000036160.14	novel	2971	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	118.934267559858	4	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGTGTTCGTATTTG	NA	False	NA	NA	False	NA	NA	NA	26792794	26780783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26781534_26781598_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
20421	chr9	+	3480	15	Antisense	novelGene_ENSMUSG00000032127.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGGAAGCGAAATCACGTGA	4381	False	NA	NA	False	NA	NA	NA	44259426	44272948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44259885_44260202_44260423_44263893_44264069_44264209_44264408_44264513_44264649_44265128_44265295_44265398_44265591_44265707_44266448_44266994_44267148_44267591_44267725_44269363_44269614_44270434_44270597_44270903_44271049_44271138_44271285_44272741
20422	chr11	-	3191	17	NIC	ENSMUSG00000020918.15	novel	3046	18	NA	NA	3	-4	intron_retention	FALSE	canonical	3	120	junction_9	106.469754361274	468	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTGATTGTTTTTTGG	6782	False	NA	NA	False	NA	NA	NA	100603288	100595575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
20423	chr5	+	3062	24	NNC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	-9	213	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	91.7625562507859	1	77	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGACCCTCATCTGGGTT	NA	False	NA	NA	False	NA	NA	NA	121536047	121578207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559428_121561629_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
20424	chr14	-	2272	9	ISM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	55257	1018	-11526	-1018	3prime_fragment	FALSE	canonical	3	460	junction_1	45.4972526643093	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGCATTGATGTGAAGGG	9824	False	NA	NA	False	NA	NA	NA	61622066	61603677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036
20425	chr6	-	1875	7	ISM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	4066	26	-1135	-26	3prime_fragment	FALSE	canonical	3	2400	junction_5	112.182019751632	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGGTGTGGAATGCGTTT	NA	False	NA	NA	False	NA	NA	NA	83290522	83282698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343
20426	chr3	+	3679	8	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	-5	-2	intron_retention	TRUE	canonical	0	0	junction_7	279.992201057567	1	117	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACTGTATTTTCCCTAC	NA	False	NA	NA	False	NA	NA	NA	102965658	102975220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549_102973359_102974081
20427	chr2	+	3120	6	NIC	ENSMUSG00000027454.11	novel	1087	7	NA	NA	-10	-20	intron_retention	FALSE	canonical	3	394	junction_1	29.5255821280462	37	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAATCTGTTTTCACAA	2412	False	NA	NA	False	NA	NA	NA	150751503	150773180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150770037_150772760
20428	chr7	+	3411	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-17	-259	intron_retention	TRUE	non_canonical	0	0	junction_3	343.496884083393	2	132	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATTTCAGGATGGAGT	NA	False	NA	NA	False	NA	NA	NA	103868026	103884100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876116_103877354_103877584_103880980_103881097_103881319_103881347_103881573_103881639_103881716_103882784_103882831
20429	chr6	+	4139	5	FSM	ENSMUSG00000036402.14	ENSMUST00000043148.13	4248	5	51	58	8	-58	multi-exon	FALSE	canonical	2	79	junction_3	124.109578598914	299	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCAGTGCGTCATTGACT	NA	False	NA	NA	False	NA	NA	NA	66873431	66998276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_66873512_66891436_66891495_66920808_66920862_66992708_66992828_66994447
20430	chr17	-	1958	7	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCACCACCGTCCCCTCG	2263	False	NA	NA	False	NA	NA	NA	29261867	29251646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29251759_29255212_29255421_29257461_29257597_29259746_29259786_29260178_29260265_29260354_29260436_29260570
20431	chr12	-	2151	15	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-55	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	264.400988373836	23	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87519099	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497157_87497287_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
20432	chr17	-	1811	12	Fusion	ENSMUSG00000023832.15_ENSMUSG00000062480.13	novel	2144	10	NA	NA	-3160	7392	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTCCACGCTCCACCAAC	NA	False	NA	NA	False	NA	NA	NA	13162647	13135307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_13135521_13136934_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141163_13141493_13141620_13142104_13142297_13142415_13142580_13143145_13143344_13162544
20433	chrX	+	2330	12	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	235.054275427388	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6212	False	NA	NA	False	NA	NA	NA	73348867	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392_73354796_73354867
20434	chr2	+	3034	22	NNC	ENSMUSG00000002455.15	novel	3054	21	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	149.216730473031	22	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATGTTGGGGCTTGGGCC	2541	False	NA	NA	False	NA	NA	NA	181243158	181297450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278767_181278905_181282384_181282508_181283685_181283798_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
20435	chr9	-	1751	14	NNC	ENSMUSG00000049526.9	novel	1126	4	NA	NA	-25252	-15062	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAGCCAACGCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	59472382	59447062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_59447258_59461413_59461509_59462621_59462686_59464152_59464200_59464568_59464679_59465310_59465417_59466604_59466738_59468177_59468360_59469225_59469310_59469578_59469650_59470147_59470333_59470505_59470595_59471159_59471269_59472101
20436	chr2	+	3033	14	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	47	-1	intron_retention	FALSE	canonical	3	12	junction_11	83.8299913850723	2	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	6243	False	NA	NA	False	NA	NA	NA	180991294	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180991370_180991461_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180996236_180996801_180996919_180997209_180997346_180997443_180997606_180997716
20438	chr7	+	4106	20	NNC	ENSMUSG00000030816.9	novel	5279	20	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_5	86.3204427500525	275	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGCCCGTCCATTTGGT	NA	False	NA	NA	False	NA	NA	NA	127187938	127202765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190453_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
20439	chr17	+	3006	2	ISM	ENSMUSG00000005936.20	ENSMUST00000232874.2	3530	6	12503	3	11758	-3	3prime_fragment	FALSE	canonical	3	522	junction_1	0	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTCTTGTTATTTAATA	NA	False	NA	NA	False	NA	NA	NA	29183947	29188520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29184059_29185625
20440	chr2	+	4630	4	NIC	ENSMUSG00000002728.15	novel	1172	6	NA	NA	27	-115	intron_retention	FALSE	canonical	3	980	junction_1	198.001683494527	106	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATGAATGTTTTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	145745243	145758230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_145745283_145750510_145754449_145757453_145757600_145757723
20441	chr17	+	3139	8	FSM	ENSMUSG00000025737.6	ENSMUST00000160349.2	3139	8	10	-10	10	1	multi-exon	FALSE	canonical	3	89	junction_2	15.8449116277055	177	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTGTCACTTTCATTGC	NA	False	NA	NA	False	NA	NA	NA	26042632	26047705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046507_26046626_26046968_26047127_26047313_26047388
20442	chr4	+	3696	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	13	24	7	-21	multi-exon	FALSE	canonical	3	201	junction_3	1.24721912892465	428	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTTGGGTTTCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	138161994	138169552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
20443	chr14	+	2432	15	FSM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	-42	4	-42	-4	multi-exon	TRUE	canonical	3	387	junction_6	25.4603533329122	850	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTCTGGTGCCAGCAT	294	False	NA	NA	False	NA	NA	NA	25842537	25887224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
20444	chr3	-	3300	22	NIC	ENSMUSG00000028127.11	novel	3489	23	NA	NA	1	-13	combination_of_known_splicesites	FALSE	canonical	2	2	junction_18	42.1262006362472	3	35	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATAACCTACAGAACATG	7237	False	NA	NA	False	NA	NA	NA	121608845	121552568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121585382_121585472_121586452_121586552_121590097_121590135_121608657
20445	chr9	-	3293	13	NNC	ENSMUSG00000056131.14	novel	2666	13	NA	NA	-16	673	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	137.850437270092	6	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTTATATTCCTATGGA	NA	False	NA	NA	False	NA	NA	NA	86453862	86435756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449589_86449630_86451263_86451449_86452254_86452461_86453782
20446	chr9	+	3808	20	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	329.870830087985	1	178	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTATGTGTTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	44290839	44303659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290847_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296046_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298621_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300807_44302132_44302184_44302285
20447	chr12	+	1725	8	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-73	-1689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1595.72096174585	3	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908785	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913546_78921139_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
20448	chr7	+	3295	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	70	1	21	-1	multi-exon	FALSE	canonical	3	147	junction_1	0	130	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTCAATTTTA	3303	False	NA	NA	False	NA	NA	NA	18962328	18981792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18962510_18978678
20449	chr8	+	2278	18	NNC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	0	-1101	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	261.606376439436	26	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTTGTGGCTCAATGGG	1906	False	NA	NA	False	NA	NA	NA	106937654	106978325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977834_106977926_106978110
20450	chr1	+	2262	21	NNC	ENSMUSG00000026288.15	novel	4125	22	NA	NA	36	-1788	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	144.582467816814	1	26	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGGAGAGTGTCAAGGG	9406	False	NA	NA	False	NA	NA	NA	87603996	87645628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625117_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642979_87643036_87645411
20451	chr3	-	2720	2	ISM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	12130	0	-1476	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	3	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	NA	False	NA	NA	NA	88305503	88301449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88301878_88303211
20452	chr14	-	1635	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	1162	0	at_least_one_novel_splicesite	FALSE	canonical	3	154	junction_8	1027.11737857705	59	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63745043	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63744906
20453	chr2	+	2164	16	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	51	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	604.846404745315	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157125553	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156890_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
20455	chr18	+	1030	2	Genic_Genomic	ENSMUSG00000058625.7	novel	1355	1	NA	NA	-93	161	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAGAAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	82356493	82358102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_82357318_82357896
20456	chr8	+	2934	19	NNC	ENSMUSG00000001472.18	novel	2582	18	NA	NA	-159	5	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_18	141.81608677839	476	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGATATGGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	124100332	124130554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814_124127929_124129885
20457	chr9	+	2675	10	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	13	1566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	175.067888066598	482	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTAATGTGTTTTGTT	9227	False	NA	NA	False	NA	NA	NA	63509954	63549176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63543665_63543766_63546321_63546427_63546874_63546925_63547136_63547308_63547488
20459	chr8	-	3297	7	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	1951	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	583.130536177126	1	77	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAACATGTTGCTGTTTT	NA	False	NA	-69	True	NA	NA	NA	125587753	125563689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125565618_125565704_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684
20460	chr3	+	3359	8	NIC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	44	0	intron_retention	FALSE	canonical	3	1030	junction_1	88.5896294663184	2	78	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATCATGTTGAGATCAA	NA	False	NA	NA	False	NA	NA	NA	97066136	97083834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_97066682_97073158_97073288_97073389_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
20461	chr10	-	2535	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	3	16	3	-16	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	1621	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGCAGGAAGGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	82599975	82584550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
20462	chr3	+	3048	13	NIC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	0	-6008	intron_retention	FALSE	canonical	3	1060	junction_6	82.628813578154	3	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCCAGTACAATTTCAGCC	4849	False	NA	NA	False	NA	NA	NA	34074246	34117478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976
20463	chr6	+	3162	11	NIC	ENSMUSG00000033706.14	novel	2486	13	NA	NA	-5	-12	intron_retention	FALSE	canonical	3	411	junction_7	64.8910625587222	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATAGGCCTTTGCAACAA	NA	False	NA	NA	False	NA	NA	NA	85408965	85423405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85419638_85421224_85421320_85421899_85421971_85422050
20464	chr2	+	2747	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	403.11191354728	1	97	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84867531	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875887_84876027_84876117_84876596_84876784_84876989
20465	chr6	+	2948	14	NNC	ENSMUSG00000049553.12	novel	4572	15	NA	NA	35	-3115	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	138.517766360973	2	64	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGACTTAAGTTTTTAAT	2534	False	NA	NA	False	NA	NA	NA	71938558	71956344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71938591_71940657_71940824_71941649_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949809_71951084_71951203_71951830_71952004_71952999_71953204_71954317_71954436_71954927_71955093_71955398
20466	chr11	-	1471	12	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4046.99544708915	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563141	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558050_69558349_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
20468	chr10	+	3152	9	FSM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	-60	-6	0	0	multi-exon	FALSE	canonical	3	116	junction_1	25.5706741209535	142	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	61551041	61574432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361
20469	chr17	-	2328	17	NNC	ENSMUSG00000024039.16	novel	6226	17	NA	NA	11	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	91.6266200402481	3	8	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTGTGGTCGTGTCGAC	1956	False	NA	NA	False	NA	NA	NA	31856128	31831620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852029_31856056
20470	chr11	+	1903	10	NIC	ENSMUSG00000059552.14	novel	1822	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	351	junction_9	564.562170575079	161	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471228	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480689_69481481_69481589_69482079
20472	chr11	+	4365	23	NNC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	0	-68	intron_retention	TRUE	non_canonical	0	0	junction_6	72.2141557973273	1	170	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATGTTTATTTACAATC	987	False	NA	NA	False	NA	NA	NA	101443692	101472709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451282_101455441_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468862_101471410
20473	chr14	+	2988	12	NIC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	-34	1812	intron_retention	FALSE	canonical	3	1684	junction_7	89.8103603513886	824	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCTTTAAGAGTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	79825214	79868229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
20474	chr11	-	2328	10	NIC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	-8	intron_retention	FALSE	canonical	0	0	junction_7	619.068555608512	2	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTACTACCCATTGTCA	3747	False	NA	NA	False	NA	NA	NA	120463699	120451138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458999_120459134_120462346_120462554_120463482
20475	chr17	+	2391	18	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-10	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	256.203071489845	12	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGTATGAGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	6320734	6358582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643_6356313_6358329
20476	chr17	+	2443	8	NNC	ENSMUSG00000002307.17	novel	2673	8	NA	NA	30	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	279.618982742953	1	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAAATGTTTTAAGTT	5755	False	NA	NA	False	NA	NA	NA	34128604	34134501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128795_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132927_34133037_34134316
20477	chr9	-	3194	7	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	-87	-3	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	76.1498887428968	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAAAGTGTTTCTGATG	6	True	NA	NA	False	NA	NA	NA	7836893	7818239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836695
20478	chr5	-	2063	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	-251	4	-251	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3056	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGGGCTGTTCTCTATC	NA	False	NA	NA	False	NA	NA	NA	134976039	134973976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134974000_134976000
20479	chr16	-	1528	13	ISM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	3	2257	3	-4	5prime_fragment	FALSE	canonical	3	4287	junction_7	411.023814868298	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTACTAAGATTTGACTT	NA	False	NA	NA	False	NA	NA	NA	87292758	87282470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
20480	chr15	+	3619	18	NNC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	11	3	intron_retention	TRUE	non_canonical	0	0	junction_1	172.365869822261	3	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCCTGTTCCTTCCCACT	2254	False	NA	NA	False	NA	NA	NA	82031462	82088879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031529_82055398_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
20481	chr18	+	2380	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26827	-2547	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	344.271016125928	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCAACCTTAAGACTGCG	6258	False	NA	NA	False	NA	NA	NA	77126076	77238266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756
20482	chr19	+	2111	2	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1519	False	NA	NA	False	NA	NA	NA	44282564	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282641_44293268
20484	chr2	+	2171	15	NIC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	95	0	intron_retention	FALSE	canonical	3	2348	junction_1	257.052930704307	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	31360313	31410684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
20485	chrX	-	2819	11	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	5	intron_retention	FALSE	canonical	3	8	junction_1	432.083336869174	3	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAAAAACCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	100128978	100122821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123216_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100127881_100128877
20486	chr3	-	2005	12	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	307.320491177404	213	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	NA	False	NA	NA	NA	157630700	157599884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616782_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
20487	chr5	+	2878	23	NNC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	-5	203	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	93.2838908789758	5	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCAGAAGCAGGACCCT	NA	False	NA	NA	False	NA	NA	NA	121536051	121578197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575698_121577456_121577545_121577890
20488	chr8	-	2910	9	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	43	0	intron_retention	FALSE	canonical	1	8	junction_7	74.4570975461708	2	54	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	NA	NA	NA	106578558	106571304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571628_106571705_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106576154_106576257_106576342_106576464_106576556_106578502
20489	chr9	+	3380	20	FSM	ENSMUSG00000090150.11	ENSMUST00000047799.13	3444	20	-15	79	-15	-79	multi-exon	FALSE	canonical	3	30	junction_7	6.62112793865633	139	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTTTCTTATTGTCA	NA	False	NA	NA	False	NA	NA	NA	103940869	104004845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_103941103_103950820_103950921_103953015_103953142_103953528_103953691_103955761_103955927_103958429_103958572_103958896_103959019_103959989_103960097_103961359_103961487_103967456_103967535_103968790_103968930_103972719_103972828_103974552_103974652_103990660_103990728_103991651_103991738_103992476_103992549_103993363_103993519_104000245_104000363_104001216_104001327_104003780
20490	chr15	-	2763	15	NIC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_9	210.521376586797	1	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	81614093	81588453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
20491	chr5	+	2072	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	-16	-194	4	2	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	2	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	331	False	NA	NA	False	NA	NA	NA	77099198	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
20492	chr8	+	1573	6	ISM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	19	801	19	-727	intron_retention	FALSE	canonical	3	2216	junction_5	109.958173866248	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGGAGCGGTGAGTGCA	NA	False	NA	NA	False	NA	NA	NA	84441824	84449176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362
20493	chr2	+	3028	15	FSM	ENSMUSG00000027075.17	ENSMUST00000121114.8	3089	15	61	0	61	0	multi-exon	FALSE	canonical	3	43	junction_1	14.9196829314671	435	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGGCTGGTGTGTATC	NA	False	NA	NA	False	NA	NA	NA	84669254	84693922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
20494	chr4	-	1887	9	ISM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	34	18063	7	4324	5prime_fragment	FALSE	canonical	3	365	junction_5	45.0692175991552	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTCTAAGAGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	133914389	133875231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
20495	chr16	+	1723	14	Antisense	novelGene_ENSMUSG00000025613.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAATGCTGAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	87280767	87291309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_87280954_87281851_87282001_87282464_87282633_87282721_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592_87290674_87291223
20496	chr16	-	2623	10	NNC	ENSMUSG00000022889.8	novel	2294	10	NA	NA	-10	-705	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	316.524880538639	117	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTGTCCCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	84532128	84515168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_84516809_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294_84531502_84532041
20499	chr11	-	3092	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9015	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	616.533607266375	1	119	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	409	False	NA	NA	False	NA	NA	NA	106615235	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545993_106562563_106562625_106570374_106570438_106571857_106571912_106573705_106573790_106575049_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586603_106586749_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
20500	chr1	+	1043	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	45	6	-2	-6	multi-exon	FALSE	canonical	3	315	junction_1	76.7739539166767	495	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTAAAGCTGTGACTGT	NA	False	NA	NA	False	NA	NA	NA	37469264	37478059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
20501	chr15	+	4061	11	NIC	ENSMUSG00000022255.17	novel	6919	12	NA	NA	104	2003	combination_of_known_junctions	FALSE	canonical	3	78	junction_6	155.039865841015	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGAGTGTAGTAATTAAT	252	False	NA	NA	False	NA	NA	NA	34083285	34143432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
20502	chr14	-	1981	15	Antisense	novelGene_ENSMUSG00000036023.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAACATTCTATGAAGGCT	2140	False	NA	NA	False	NA	NA	NA	51058738	51047345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_51047669_51047953_51048026_51049230_51049282_51052324_51052422_51052806_51052883_51053651_51053755_51054427_51054648_51054786_51054927_51056665_51056729_51056808_51056944_51057115_51057244_51057396_51057498_51057933_51058032_51058249_51058377_51058491
20504	chr6	+	2235	10	NIC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	44	intron_retention	FALSE	canonical	3	404	junction_1	57.2169361096675	1171	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGTGTTGTTAAGTCAA	NA	False	NA	NA	False	NA	NA	NA	72575584	72584469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583478_72583555_72583723_72583856_72584017_72584224
20506	chr7	+	4065	27	FSM	ENSMUSG00000023118.16	ENSMUST00000023882.14	4116	27	46	5	0	0	multi-exon	FALSE	canonical	3	103	junction_24	19.2187654844311	204	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCCTGAGGATGTGCC	NA	False	NA	NA	False	NA	NA	NA	18758347	18788537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862_18783965_18786291_18786480_18787194_18787372_18787471_18787568_18787839_18788224_18788313
20507	chr4	-	4479	11	NNC	ENSMUSG00000053841.16	novel	4569	11	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	102.04038416235	154	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTATCTCAGCCAATCGA	7902	False	NA	NA	False	NA	NA	NA	129534816	129519875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129522992_129523386_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
20508	chr9	+	3203	10	FSM	ENSMUSG00000006673.15	ENSMUST00000112155.9	3040	10	10	-173	6	2	multi-exon	FALSE	canonical	3	392	junction_1	89.886485340754	1	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1180	False	NA	NA	False	NA	NA	NA	108394318	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
20509	chr11	-	2540	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	3	-1109	3	1109	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	1999	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACCATAATGGTGAATAG	NA	False	NA	NA	False	NA	NA	NA	76134548	76111226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
20510	chr18	-	4000	3	ISM	ENSMUSG00000056124.6	ENSMUST00000070080.6	5808	9	57153	3	57153	-3	3prime_fragment	FALSE	canonical	3	329	junction_2	4	207	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTGGTGATGTCATT	9336	False	NA	NA	False	NA	NA	NA	20822308	20817658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_20821526_20821991_20822094_20822277
20511	chr6	+	3707	11	ISM	ENSMUSG00000029863.14	ENSMUST00000156829.8	1439	12	-100	-2016	35	0	intron_retention	FALSE	canonical	3	27	junction_8	35.6869724129128	114	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGCCTGGTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	42241953	42259442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017
20513	chr9	+	2654	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	192.749189362757	2	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824700	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77890648_77890717
20514	chr13	+	2650	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	213	-125	-37	125	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	404	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACATAAAATATTGGAGGT	4701	False	NA	NA	False	NA	NA	NA	38221183	38245534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
20515	chr12	-	2305	16	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-4929	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	338.556701307181	51	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGTGTAGAAAAAGTCTCA	NA	False	NA	NA	False	NA	NA	NA	87523973	87496698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497158_87497226_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017_87519029_87523796
20516	chr7	-	7267	33	Fusion	ENSMUSG00000030718.10_ENSMUSG00000099137.2	novel	2772	14	NA	NA	-2470	-17186	multi-exon	TRUE	non_canonical	0	0	junction_1	0	57	34	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGAAAGCGGTGCCAAAAGA	2651	False	NA	NA	False	NA	NA	NA	100118867	100021492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_100021702_100023468_100023734_100029166_100029327_100039279_100039508_100040137_100040383_100044369_100044506_100044958_100045049_100048871_100049021_100055160_100055310_100056064_100056278_100056922_100057035_100059536_100059656_100062530_100062660_100065260_100065743_100067645_100067803_100068857_100069104_100071720_100071899_100073943_100074135_100075187_100075358_100076381_100076502_100079254_100079524_100079941_100080033_100081176_100081780_100084963_100085302_100089377_100089517_100090236_100090302_100092561_100092767_100093510_100093646_100097916_100098076_100100770_100100992_100103804_100104697_100108975_100109092_100118581
20517	chr9	+	3267	11	FSM	ENSMUSG00000006673.15	ENSMUST00000006851.15	3331	11	60	4	18	-4	multi-exon	FALSE	canonical	3	8	junction_1	235.086983901704	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAAGCTACTGGAGAACG	1234	False	NA	NA	False	NA	NA	NA	108394372	108437358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108394440_108395901_108396026_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
20518	chr7	+	2501	18	NNC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	978.455693045217	2096	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTCATGCCTCAGCTGT	NA	False	NA	NA	False	NA	NA	NA	12758117	12764959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12758190_12758891_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
20519	chrX	-	2993	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	49	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	188.219857729598	9	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800269	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903_149767564_149770883_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
20520	chr2	-	2648	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	-62	0	-62	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	477	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5852	False	NA	NA	False	NA	NA	NA	156834038	156769264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
20521	chr16	-	2554	20	NIC	ENSMUSG00000022771.18	novel	2333	21	NA	NA	-3	-119	intron_retention	FALSE	canonical	3	214	junction_1	127.365637203157	8	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATTTCTGATCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	16929082	16904538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
20522	chr11	+	2044	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-9	-788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	298.965938951348	1188	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATTGGATTCTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	3913999	3929216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920712_3923227_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
20523	chr17	+	1622	4	Antisense	novelGene_ENSMUSG00000024097.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGATCGGCGAGGAGATG	NA	False	NA	NA	False	NA	NA	NA	80507571	80511630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_80509032_80509597_80509636_80510120_80510174_80511559
20525	chr9	+	2386	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204.531027961201	3	57	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385256	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386081_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388739_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391276_108391408_108391488_108391594_108391741_108391835_108391944_108392044_108392165_108392233_108392305_108392432_108392994
20526	chr5	-	2299	15	NNC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	210.286939534474	1320	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	22755341	22691486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22740469_22740698_22742519_22742595_22751395_22751597_22752921_22753015_22755189
20527	chr7	+	4319	23	Antisense	novelGene_ENSMUSG00000063550.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCCGGCCGCTCCGCCCT	NA	False	NA	NA	False	NA	NA	NA	101783151	101859386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_101784201_101787938_101788093_101788674_101788858_101794763_101794927_101796404_101796587_101801526_101801663_101802341_101802456_101803000_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825612_101829633_101829723_101832669_101832807_101834011_101834176_101835066_101835248_101835837_101835947_101841109_101841252_101843868_101844044_101844154_101844258_101844991_101845098_101859226
20528	chr1	+	1788	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-14	-556	-14	556	mono-exon	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	60743076	60744864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743100_60744900
20529	chr7	-	3564	21	NNC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	-753	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	428.548349080941	1	125	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACTCTGGTGTCATCTT	NA	False	NA	NA	False	NA	NA	NA	28662518	28592677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604735_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28662418
20530	chr17	+	2206	8	NIC	ENSMUSG00000034681.18	novel	1920	9	NA	NA	4	0	intron_retention	FALSE	canonical	3	495	junction_1	374.654888816743	4140	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	936	False	NA	NA	False	NA	NA	NA	24633671	24644872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
20531	chr10	-	1963	7	Antisense	novelGene_ENSMUSG00000006728.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	237	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGACGCTTCGGGCCAG	2827	False	NA	3	True	NA	NA	NA	126903145	126899536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_126899627_126900086_126900322_126900452_126900588_126900701_126900871_126901022_126901870_126901967_126902109_126902799
20532	chr7	-	2913	5	Fusion	ENSMUSG00000074166.8_ENSMUSG00000056383.11	novel	2071	5	NA	NA	6	0	intron_retention	FALSE	canonical	0	0	junction_4	34.3329288002058	151	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTTCTGACTTTT	NA	False	NA	NA	False	NA	NA	NA	41148845	41022346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41148717
20533	chr12	+	2076	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	39	-64	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2005.23198990375	1	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAACAGTCTTGAACTTTC	NA	False	NA	NA	False	NA	NA	NA	24758278	24764081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760369_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
20534	chr14	+	5066	12	NNC	ENSMUSG00000022136.9	novel	5141	12	NA	NA	-3815	-1	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	47.5606615694696	103	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACTACTTGCTTCTTAT	1611	False	NA	NA	False	NA	NA	NA	119171572	119219108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_119171694_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543_119212677_119214121_119214271_119215438
20535	chr11	-	4862	5	FSM	ENSMUSG00000018427.9	ENSMUST00000018571.5	4847	5	-15	0	-15	0	multi-exon	FALSE	canonical	3	55	junction_1	6.94172168845741	125	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGAGAATGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	86884548	86827250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634_86862949_86884417
20536	chr15	-	1496	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	18	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4701.41214822738	3	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAGAAAAGAGTTTTG	176	False	NA	NA	False	NA	NA	NA	98832301	98829321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830149_98830234_98830444_98830572_98830722_98830853_98831077_98832213
20537	chr3	+	2915	5	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	0	-12	intron_retention	FALSE	canonical	3	403	junction_2	42.6636554927025	27	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTTTCTGTATATCTG	7072	False	NA	NA	False	NA	NA	NA	108291194	108295483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291748_108292285_108293724_108293815_108294053_108294593_108294712_108294914
20538	chr12	-	2153	14	NNC	ENSMUSG00000020664.11	novel	2544	14	NA	NA	8	-287	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	231.420158890336	65	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTACTGGTTATTCTGAG	NA	False	NA	NA	False	NA	NA	NA	31401405	31381562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384763_31385501_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
20540	chrX	-	1914	7	Antisense	novelGene_ENSMUSG00000031432.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTCCCGCCCAGCGCGCG	NA	False	NA	NA	False	NA	NA	NA	139376889	139357373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_139357612_139365978_139366162_139368418_139368517_139369580_139369707_139372743_139372883_139374529_139374686_139375915
20541	chr7	-	2757	11	NIC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	4	-6	intron_retention	FALSE	canonical	3	275	junction_10	23.9668521086938	592	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTGCTTGAGTGATT	NA	False	NA	NA	False	NA	NA	NA	105401416	105395131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105399538_105400796_105400937_105401188_105401261_105401377
20542	chr2	+	2077	6	Antisense	novelGene_ENSMUSG00000027379.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTGATGTCGAACGTGG	NA	False	NA	NA	False	NA	NA	NA	127664484	127673781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_127665980_127667026_127667070_127669219_127669417_127671356_127671497_127671597_127671658_127673639
20544	chr8	+	2330	12	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	3	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	302.098254499924	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTAACTAAGCACTGTTAG	3016	False	NA	NA	False	NA	NA	NA	13389663	13428391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141_13428249_13428317
20545	chr2	-	3703	4	FSM	ENSMUSG00000027547.18	ENSMUST00000103074.2	3741	4	35	3	35	-3	multi-exon	FALSE	canonical	3	42	junction_2	261.72037665332	32	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCGGGCTTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	168609086	168590254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168592381_168594373_168594661_168597685_168598721_168608831
20546	chr13	-	5745	24	Antisense	novelGene_ENSMUSG00000113775.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	78	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGACGGGCAAACATCGC	NA	False	NA	NA	False	NA	NA	NA	14373947	14238390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_14238616_14239407_14239463_14294723_14294835_14301033_14301100_14303757_14303849_14307018_14307099_14310750_14310845_14317564_14317703_14319870_14319952_14328000_14328076_14329563_14329719_14332356_14332430_14334760_14334858_14335882_14335985_14338697_14338932_14339347_14339527_14344502_14344657_14355802_14355888_14358889_14359089_14361399_14362615_14365725_14365842_14367950_14368167_14369914_14370062_14372190
20547	chr6	+	1226	3	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	0	intron_retention	FALSE	non_canonical	0	0	junction_2	2271	2499	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684552	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688558_122690767
20548	chr10	+	1893	6	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	-2	-7	intron_retention	FALSE	non_canonical	0	0	junction_5	623.953395695544	12	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTACACTCCTGCCTG	7	False	NA	NA	False	NA	NA	NA	79694603	79700259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695724_79699132
20549	chr9	-	1960	1	NIC	ENSMUSG00000051234.7	novel	1232	3	NA	NA	5681	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAATTAATATGCTCTT	9481	False	NA	NA	False	NA	NA	NA	96354960	96353000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_96353000_96355000
20550	chr12	+	1674	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	7	1278	7	-1278	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGACCCAAGTCCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	8363438	8392546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
20551	chr6	-	3245	4	NIC	ENSMUSG00000029998.15	novel	4295	6	NA	NA	14	-619	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	84.3972090112516	6	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTTTCTCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	86374087	86363606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_86366354_86368657_86368811_86369118_86369331_86373954
20552	chr6	-	1979	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	8810	-265	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_5	380.930964874214	56	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	120884949	120870079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120884774
20553	chr16	-	3128	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	390.677136520682	1	91	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATAACTGTATCATTGT	8110	False	NA	NA	False	NA	NA	NA	4867727	4831773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832743_4832905_4833467_4836263_4836389_4836703_4836878_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
20554	chr11	-	3454	27	NNC	ENSMUSG00000017210.15	novel	3133	27	NA	NA	-1	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	47.7785200926998	335	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGGCTGTGTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	98620245	98595429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98617685_98617759_98619440_98619524_98619610_98619814_98620197
20555	chr8	+	4714	18	NNC	ENSMUSG00000025812.19	novel	5815	25	NA	NA	-1238	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	38.89948007587	91	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGTCTCTAGTTTT	NA	False	NA	NA	False	NA	NA	NA	128096732	128338767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_128096946_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125232_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128186754_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
20556	chr8	+	2755	20	NNC	ENSMUSG00000001472.18	novel	2582	18	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_18	172.52467806936	81	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAACATGGTGATATGG	NA	False	NA	NA	False	NA	NA	NA	124100560	124130547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814_124127929_124129543_124129600_124129885
20557	chr11	-	1641	9	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	119	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGTCCTGGCTGAGCCAT	NA	False	NA	NA	False	NA	NA	NA	80286972	80279939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80279970_80280078_80280155_80280597_80280648_80282156_80282225_80282657_80282817_80283907_80284003_80285111_80285355_80285924_80286087_80286214
20559	chr6	+	2750	10	Genic_Genomic	ENSMUSG00000108591.2	novel	1560	1	NA	NA	-6255	-1054	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCGGCGGGCGAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	72409778	72416539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_72410235_72410274_72411378_72411962_72412096_72412186_72412371_72412792_72413011_72413176_72413323_72413398_72413512_72413976_72414101_72414353_72414437_72416349
20560	chr10	+	3623	12	FSM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-93	13	-68	-13	multi-exon	FALSE	canonical	3	31	junction_1	32.2574867983458	52	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTTAAAGAACGGAGTT	NA	False	NA	NA	False	NA	NA	NA	103203575	103255223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
20562	chr15	+	1637	11	ISM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	8	745	8	-745	5prime_fragment	FALSE	canonical	3	1134	junction_3	90.3416293853504	61	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTACCCTCTGTAAGCT	NA	False	NA	NA	False	NA	NA	NA	85220453	85346668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480
20563	chr1	-	3542	17	NIC	ENSMUSG00000026425.16	novel	3533	22	NA	NA	-11	9009	intron_retention	FALSE	canonical	3	115	junction_7	9.49670995661129	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGCTGGAGGGTCCCATC	NA	False	NA	NA	False	NA	NA	NA	131455101	131238263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_131238437_131244866_131244973_131247262_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
20564	chrX	-	2333	9	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	39	0	intron_retention	FALSE	canonical	0	0	junction_5	465.681204661515	6	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72830464	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824312_72824503_72824637_72824757_72824819_72825282_72826323_72830380
20565	chr11	+	1960	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	38	2	38	-1	multi-exon	FALSE	canonical	3	238	junction_1	255.452956564905	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAAGGCTCCTTTCCTT	1672	False	NA	NA	False	NA	NA	NA	120675378	120679926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
20566	chr3	-	2850	5	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	109	-8	intron_retention	FALSE	canonical	3	3673	junction_2	2727.92324855374	6	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCGTTTGCTTCTGTCCA	NA	False	NA	NA	False	NA	NA	NA	86049900	86045254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86045418_86045789_86045900_86046346_86048734_86049004_86049109_86049814
20567	chr3	+	4231	26	FSM	ENSMUSG00000028030.13	ENSMUST00000169172.5	6578	26	28	2319	4	863	multi-exon	FALSE	canonical	1	21	junction_1	16.5633812973076	6	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCGAACTCAGAAATCCGC	NA	False	NA	NA	False	NA	NA	NA	132389932	132545130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_132390156_132392532_132392754_132400143_132400217_132411273_132411389_132413545_132413620_132421349_132421492_132424380_132424442_132426281_132426344_132428066_132428129_132428428_132428578_132430536_132430676_132431421_132431522_132432417_132432468_132432811_132432942_132437926_132438026_132440107_132440171_132440478_132440606_132441834_132441886_132443265_132443350_132448762_132448849_132456947_132456985_132458268_132458431_132480181_132480358_132507264_132507441_132520950_132521111_132543721
20568	chr9	+	1681	12	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-41	-2	intron_retention	FALSE	non_canonical	0	0	junction_9	910.727563113622	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1107	False	NA	NA	False	NA	NA	NA	108437596	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441942_108442064_108442210_108442300_108442610_108442696
20569	chr13	+	2065	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	-22	2	-22	-2	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	3177	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGACCAGTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85337504	85361840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
20570	chr10	+	2412	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-3	2	intron_retention	FALSE	non_canonical	0	0	junction_10	591.00847519429	1	67	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1594	False	NA	NA	False	NA	NA	NA	79690471	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698363_79698479_79698704_79698811_79698890_79698978_79699154_79699485
20572	chr13	+	4223	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	2	0	2	0	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	193	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGCCTGATTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	5911482	5920393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
20573	chr2	+	2749	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-13	-4	intron_retention	FALSE	non_canonical	0	0	junction_10	114.320992193903	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTGTTGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	130266245	130285650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281635_130281760_130281838_130282154_130282283_130282371_130282500_130282626_130282663_130282819_130282927_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
20576	chr16	+	2660	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16995	1941	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	472.316746871207	1388	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTACATTTAAGGCCCGT	690	False	NA	NA	False	NA	NA	NA	48432024	48453204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
20578	chr12	+	2783	23	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	94.2167472084738	8	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	17398510	17480096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17478805_17478896_17479115_17479578_17479853
20579	chr16	+	2471	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	22	12	3	-12	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	556	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATCAAAATTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	4501981	4525547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
20581	chr13	+	2716	5	NNC	ENSMUSG00000039219.19	novel	571	5	NA	NA	-34776	-56809	intron_retention	FALSE	non_canonical	0	0	junction_1	0	990	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGCAGGCGTCGTATGC	NA	False	NA	NA	False	NA	NA	NA	14203040	14237995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_14203048_14226700_14229041_14229734_14229800_14232374_14232472_14237788
20582	chr7	-	2127	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	689	junction_7	51.3589627577851	224	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCATGGTTGAGCCTGGT	7986	False	NA	NA	False	NA	NA	NA	126641582	126626908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
20583	chr11	-	2796	2	ISM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	2753	91	2719	-91	3prime_fragment	FALSE	canonical	3	630	junction_1	0	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTTGACGGAGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	11756206	11750378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_11753064_11756095
20584	chr2	-	3193	20	NNC	ENSMUSG00000027014.15	novel	3090	20	NA	NA	10	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	82.2027761020999	1	57	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGTACTCTGACAAGTT	NA	False	NA	NA	False	NA	NA	NA	77776514	77725989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_77726927_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759819_77761762_77761890_77763042_77763111_77766936_77767067_77776493
20585	chr11	+	1790	13	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	3	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1973.91266833723	3	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940641	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946048_22946340_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951559_22951691_22952166_22952402_22952816_22952931_22953136
20587	chr8	+	2609	4	NNC	ENSMUSG00000052446.18	novel	2689	4	NA	NA	12346	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	151.263566884649	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72719636	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72719835_72719943_72720005_72721742_72722440_72722524
20588	chr8	+	2435	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	18	260	-2	147	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	138	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATTGAAATGTATTTCA	NA	False	NA	NA	False	NA	NA	NA	72704932	72723917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
20590	chr5	+	1997	6	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	-12	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	301.58938973379	3255	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	NA	False	NA	NA	False	NA	NA	NA	143389580	143407659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143389808_143390973_143391127_143398245_143398347_143403804_143403964_143405194_143405448_143406555
20591	chr15	+	1761	11	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	82	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	396.344912923075	12	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	NA	False	NA	NA	NA	85220527	85347413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243836_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
20594	chr1	+	2864	16	NNC	ENSMUSG00000026427.17	novel	3459	17	NA	NA	62	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	268.26913517751	12	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCCTGGTCTTCCATGA	NA	False	NA	NA	False	NA	NA	NA	131080979	131107731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095974_131098673_131098849_131106369_131106625_131106890
20596	chr5	-	3580	6	NNC	ENSMUSG00000029213.12	novel	3360	6	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	137.207288436147	1018	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCATAGACTCATGGGTA	NA	False	NA	NA	False	NA	NA	NA	72325498	72313919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_72314507_72314785_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
20597	chr10	-	1980	10	Antisense	novelGene_ENSMUSG00000004207.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCGCAGGCGCGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	60138370	60113477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_60113604_60127419_60127554_60128283_60128356_60129124_60129254_60130311_60130509_60130742_60130889_60131725_60131782_60134875_60135007_60135240_60135334_60137474
20598	chr7	+	2923	14	NNC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	0	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	368.992487215257	1	106	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATGAAAATAAAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	79944226	79965967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954356_79954444_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962926_79964861
20599	chr7	+	3290	3	NNC	ENSMUSG00000052214.10	novel	3366	2	NA	NA	-18	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.5	1	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAAGCTGGTTGTCTTCA	3215	False	NA	NA	False	NA	NA	NA	18962240	18981786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_18962311_18962397_18962510_18978678
20600	chr10	-	1727	14	ISM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	976	4	537	1	3prime_fragment	FALSE	canonical	3	1936	junction_8	220.060884528369	1	62	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116898743	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721
20601	chr9	+	3121	26	NNC	ENSMUSG00000032295.16	novel	3820	26	NA	NA	57	-2	at_least_one_novel_splicesite	TRUE	canonical	2	9	junction_12	54.4515050297051	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCACTATAATGGTGCCT	NA	False	NA	NA	False	NA	NA	NA	57038126	57049485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045705_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
20602	chr9	+	2075	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	37	0	-24	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	1382	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	NA	False	NA	NA	NA	55116245	55131717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
20603	chr8	+	2987	16	NNC	ENSMUSG00000047866.21	novel	2859	15	NA	NA	29	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	87.1582468846179	2	63	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTCTCCAGTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	87350700	87443264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_87351045_87353481_87353634_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
20604	chr8	-	2813	17	NIC	ENSMUSG00000019470.13	novel	4409	18	NA	NA	10	-1	intron_retention	FALSE	canonical	3	374	junction_10	45.9413688846991	1	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATCCCGGTCTTGACCTC	1035	False	NA	NA	False	NA	NA	NA	3671292	3660090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661835_3662962_3663077_3663158_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
20605	chr15	+	2381	15	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	3821	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	809.0317341976	1	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAATGTTCTGCCTGAGT	7020	False	NA	NA	False	NA	NA	NA	81783327	81799328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81783423_81787676_81788208_81788972_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796190_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828_81798883_81798971
20606	chr18	+	2259	5	FSM	ENSMUSG00000073568.3	ENSMUST00000234910.2	2257	5	-8	6	-8	4	multi-exon	FALSE	canonical	3	262	junction_1	19.1441897190766	747	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTTCAGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	47054873	47067293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472
20607	chrX	+	924	2	FSM	ENSMUSG00000031231.5	ENSMUST00000155377.2	526	2	-403	5	-403	-5	multi-exon	FALSE	canonical	3	9427	junction_1	0	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATTCTAGGCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	105062593	105065559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105063310_105065351
20609	chr16	+	4927	47	FSM	ENSMUSG00000033653.19	ENSMUST00000117598.8	4935	47	6	2	6	-2	multi-exon	TRUE	canonical	3	107	junction_1	17.1577937561462	103	39	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCAGGCCTGCCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	21241956	21463420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_21241976_21253436_21253814_21254502_21254572_21261083_21261215_21262838_21262933_21266004_21266038_21267098_21267154_21274978_21275104_21276128_21276216_21278490_21278559_21279871_21280026_21280127_21280188_21282344_21282453_21285163_21285245_21288866_21289038_21293997_21294073_21295223_21295260_21296235_21296327_21296594_21296642_21297143_21297234_21314629_21314677_21318937_21319161_21323147_21323238_21325519_21325572_21330268_21330312_21336032_21336106_21336862_21336983_21340633_21340706_21345126_21345247_21346285_21346343_21350029_21350113_21351032_21351118_21351812_21351912_21358768_21358859_21362017_21362065_21372824_21372973_21378083_21378174_21378947_21378991_21381879_21381984_21386718_21386804_21387138_21387222_21393716_21393798_21395374_21395545_21400282_21400449_21426917_21426972_21459428_21459510_21462870
20610	chr7	+	3316	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	49	1	0	-1	multi-exon	FALSE	canonical	3	147	junction_1	0	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTCAATTTTA	3282	False	NA	NA	False	NA	NA	NA	18962307	18981792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18962510_18978678
20611	chr7	+	2953	12	Antisense	novelGene_ENSMUSG00000030894.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.287479787288034	364	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGATAAGTCACATGAGC	NA	False	NA	NA	False	NA	NA	NA	105394750	105401420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105395978_105396147_105396275_105396592_105396752_105396864_105396987_105397788_105397854_105398084_105398282_105398434_105398633_105398745_105399195_105399386_105399537_105400792_105400936_105401187_105401261_105401377
20612	chr11	+	2105	11	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	25	-4339	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3347.61736164694	2	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTCAGATTCAAAGTATG	NA	False	NA	NA	False	NA	NA	NA	55360568	55391325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386122_55386234_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
20614	chr3	-	3025	8	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1645	junction_7	213.190534690527	30	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	NA	False	NA	NA	NA	54642456	54636098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54636722_54637185_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
20615	chr3	+	2511	9	FSM	ENSMUSG00000028199.19	ENSMUST00000029850.15	2507	9	-4	0	-4	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	751	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTCTGTCTCGTGTG	NA	False	NA	NA	False	NA	NA	NA	154302343	154328819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
20616	chr11	+	3524	9	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4355	intron_retention	FALSE	canonical	3	262	junction_2	2356.70638816124	1	93	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATTCTAGATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	55360559	55391309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_55360628_55376451_55376565_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738
20617	chr12	-	2753	10	NNC	ENSMUSG00000041645.15	novel	2850	9	NA	NA	-28	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	264.313366206773	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGGGTGTTGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	103392117	103374239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390574_103390710_103390857_103392037
20618	chr4	-	5432	1	NIC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-27	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	155	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAAACGTATACATGCT	2	True	NA	NA	False	NA	NA	NA	41098180	41092748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41092700_41098200
20619	chrUn_JH584304v1	-	2262	7	Intergenic	novelGene_4611	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_6	310.60822948245	1	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCCAACAATCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	59687	52195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55702_56985_57152_58563_58746_59626
20620	chr10	+	2677	5	Antisense	novelGene_ENSMUSG00000055531.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGTTAGGAGGTCCTGCTA	NA	False	NA	NA	False	NA	NA	NA	117183547	117197152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117185375_117191841_117192030_117194897_117195055_117196347_117196460_117196759
20622	chr2	+	3174	20	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	111	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGGCTCCGCCCAACTCT	1337	False	NA	NA	False	NA	NA	NA	4995808	5017566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4996949_4997688_4997835_4998553_4998667_4999379_4999496_5000537_5000673_5001910_5002141_5003342_5003453_5003539_5003646_5004484_5004594_5005672_5005868_5006074_5006194_5008820_5008992_5009761_5009927_5011159_5011395_5011886_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
20623	chr4	-	4324	8	Antisense	novelGene_ENSMUSG00000039768.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCGCCAAACCGGCGAGG	NA	False	NA	NA	False	NA	NA	NA	152060414	152018195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_152018280_152034848_152034979_152037296_152037371_152041557_152041660_152052953_152054424_152055311_152055387_152057935_152058124_152058213
20624	chr18	+	3370	9	Antisense	novelGene_ENSMUSG00000024587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.65359456941537	1	76	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCAGCGGTCGCGGATAT	NA	False	NA	NA	False	NA	NA	NA	64636804	64649608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_64638114_64638219_64638449_64640841_64640932_64642316_64643601_64644679_64644771_64644851_64644949_64645054_64645120_64648395_64648483_64649490
20625	chr6	+	4675	34	NNC	ENSMUSG00000034023.17	novel	5512	44	NA	NA	-6814	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	83.5032647563977	2	109	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTGTTGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	113521970	113573978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545568_113545678_113547833_113547978_113549604_113549722_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
20626	chr11	+	3905	38	NNC	ENSMUSG00000039230.15	novel	3906	39	NA	NA	10	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_21	54.3336283547972	223	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCCTCTGCCTATCTC	NA	False	NA	NA	False	NA	NA	NA	121342784	121507990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121384584_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469608_121473552_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
20627	chr7	-	3515	9	FSM	ENSMUSG00000030929.18	ENSMUST00000150844.3	3564	9	38	11	38	2	multi-exon	FALSE	canonical	3	53	junction_1	8.7571399440685	276	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATGTAGAACATCAGATT	NA	False	NA	NA	False	NA	NA	NA	119393243	119383064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
20628	chr2	-	3560	20	NNC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-4	-1	intron_retention	FALSE	canonical	0	0	junction_4	87.5270595278082	1	80	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTTCAGTACTGTCATT	NA	False	NA	NA	False	NA	NA	NA	11782365	11747386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753299_11753875_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782214
20629	chr11	+	2055	10	NNC	ENSMUSG00000017421.19	novel	2311	11	NA	NA	0	-99	intron_retention	FALSE	canonical	0	0	junction_5	402.172925155828	16	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTTTTATTCATAACCC	NA	False	NA	NA	False	NA	NA	NA	80274156	80286972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280123_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
20630	chr2	+	2554	1	FSM	ENSMUSG00000065258.3	ENSMUST00000083324.3	74	1	-502	-1978	-502	1978	mono-exon	FALSE	NA	NA	NA	NA	NA	74	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800770	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26800800_26803300
20631	chr16	+	1783	15	Antisense	novelGene_ENSMUSG00000025613.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCGCCGCCTCGCGTCCC	NA	False	NA	NA	False	NA	NA	NA	87280824	87292763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_87280954_87281691_87281814_87282469_87282633_87282721_87282793_87283122_87283245_87283328_87283409_87283482_87283550_87284421_87284599_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592_87290674_87291223_87291316_87292616
20632	chr10	+	3404	7	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_6	233.462107322699	27	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGGGCCTTTATCTGTG	NA	False	NA	NA	False	NA	NA	NA	80438721	80451616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80449903_80450437
20633	chrX	+	4145	17	NNC	ENSMUSG00000000838.18	novel	4409	17	NA	NA	-39	-6	at_least_one_novel_splicesite	FALSE	canonical	3	169	junction_14	180.447880286802	395	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAATACTAGTCTGACAG	NA	False	NA	NA	False	NA	NA	NA	67722368	67761563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
20634	chr3	+	3037	7	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	44.1877308260512	695	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCTTTGTGAAAATGAT	NA	False	NA	NA	False	NA	NA	NA	58484115	58500556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115_58498595_58498657
20635	chr5	+	3357	18	Antisense	novelGene_ENSMUSG00000029657.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	2.58823529411765	1	146	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGGGAGGTCCCAATCG	NA	False	NA	NA	False	NA	NA	NA	149540343	149559706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_149541175_149541850_149542013_149542209_149542335_149542431_149542528_149543335_149543468_149544015_149544148_149546928_149547062_149548433_149548643_149550718_149550854_149551000_149551109_149552671_149552890_149553247_149553502_149553809_149553938_149554224_149554323_149554849_149554973_149555496_149555640_149557294_149557351_149559432
20638	chr11	+	1770	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	55	275	11	-275	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	3	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAAATATATCATGCCT	3046	False	NA	NA	False	NA	NA	NA	75623749	75656396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
20639	chr2	-	2209	6	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	221.551258177425	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534824	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75506825_75506926_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
20640	chr11	-	2683	27	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	155.662494295118	33	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	54924282	54869933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872102_54872286_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
20641	chr1	+	5089	5	FSM	ENSMUSG00000050565.17	ENSMUST00000060404.5	5135	5	30	16	3	-16	multi-exon	FALSE	canonical	3	13	junction_1	13.683932183404	51	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATTTATGAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	155916665	155944591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_155916749_155935156_155935334_155937333_155937916_155939338_155939441_155940446
20644	chr16	-	2499	18	NIC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	-15	1	intron_retention	FALSE	canonical	3	368	junction_7	54.0053822769443	10	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTGGGTCTGTGATC	NA	False	NA	NA	False	NA	NA	NA	18630391	18599201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
20645	chrX	+	1858	12	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-6	39	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	887.99570023529	46	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543391	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552854_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
20646	chrX	+	3728	16	ISM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	12	17486	12	-3	5prime_fragment	FALSE	canonical	3	75	junction_1	59.2754024308004	88	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCCTTTCATGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	133208915	133245899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824
20647	chrX	+	2475	15	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	38	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	950.429730947737	6	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	74139497	74153381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151788_74151911_74152301_74152988_74153128
20648	chr9	-	2860	7	NNC	ENSMUSG00000032553.15	novel	3166	6	NA	NA	3	-57	intron_retention	TRUE	non_canonical	3	124	junction_1	57.6040122059412	4	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTGTTCTCATTGCTT	NA	False	NA	NA	False	NA	NA	NA	103079325	103066345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103066653_103066898_103067621_103068267_103068323_103069411_103069549_103074736_103076066_103078485_103078581_103079110
20649	chr6	-	2819	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	79.5979889428747	1	43	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGTATCGGAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	146479278	146451135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
20650	chr19	-	3021	2	NNC	ENSMUSG00000092274.4	novel	3004	2	NA	NA	0	-3	intron_retention	TRUE	canonical	0	0	junction_1	0	74	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTTCTTAGAATTGTCA	10001	False	NA	NA	False	NA	NA	NA	5895506	5892337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5894968_5895115
20651	chr3	+	2320	20	NNC	ENSMUSG00000028034.16	novel	2374	20	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	411.030075531815	48	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	NA	False	NA	NA	NA	151916146	151938408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927915_151928561_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
20655	chr2	-	1682	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	-86	2	-86	-2	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	202	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCGCCTGTCCAATTC	NA	False	NA	NA	False	NA	NA	NA	25114800	25112173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
20656	chr2	-	3112	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	25	0	25	0	multi-exon	FALSE	canonical	3	256	junction_2	30.0416377715996	583	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	129139107	129110129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
20657	chr13	-	4503	4	NNC	ENSMUSG00000048280.19	novel	13215	4	NA	NA	-8	3827	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7.76029781788188	4	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGTTATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	67831622	67815558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67819731_67821116_67821213_67821680_67821808_67831514
20658	chr6	+	2196	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	85	0	-60	0	multi-exon	FALSE	canonical	3	738	junction_2	58.4776785524946	1030	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	124640074	124681381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
20659	chr7	-	3698	15	NNC	ENSMUSG00000002980.15	novel	2429	15	NA	NA	1	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	160.810717101485	178	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACACTTTCCTACCGCCAG	3965	False	NA	NA	False	NA	NA	NA	19504419	19490065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19490545_19490632_19491298_19491563_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
20660	chr1	+	2333	9	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	343.948374578221	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGATTGCTTTATATAGTA	NA	False	NA	NA	False	NA	NA	NA	4878151	4916957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878210_4898787_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4916020_4916073
20661	chr19	+	2591	12	NIC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	-16	2	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	380.920481495995	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGGGTCCGTTTCTTTTCTT	818	False	NA	NA	False	NA	NA	NA	6413935	6427228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6414149_6415693_6415823_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
20662	chr3	+	2763	9	NNC	ENSMUSG00000042626.14	novel	2617	12	NA	NA	-1088	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	239.046510903213	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACCTCGGCCTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	89330744	89337317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89330879_89331003_89331124_89331861_89331914_89332072_89332208_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
20663	chr11	+	2331	14	NNC	ENSMUSG00000007850.17	novel	1724	12	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	138.150077042983	121	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50268632	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268822_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
20664	chr3	+	1846	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	128	3	56	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	3	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3932	False	NA	NA	False	NA	NA	NA	88204550	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
20665	chr8	+	2240	1	Antisense	novelGene_ENSMUSG00000031949.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	42	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGCGGATTTCTGAGTT	NA	False	NA	NA	False	NA	NA	NA	112693903	112696143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112693900_112696100
20667	chr13	+	2829	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	350.224626855677	791	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTGTCTCTTACTTGT	NA	False	NA	NA	False	NA	NA	NA	54225900	54262360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54244464_54244525_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
20668	SIRV3	+	1729	3	NNC	SIRV3A	novel	2018	3	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_2	417	484	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1962	7822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2006_6057_7498_7576
20669	chr8	+	2155	11	Genic_Genomic	ENSMUSG00000110711.2	novel	1782	1	NA	NA	-6674	15806	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCCCTGGGCGTGGCTA	NA	False	NA	NA	False	NA	NA	NA	96590767	96615029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_96591530_96591753_96591877_96593445_96593602_96596100_96596264_96597400_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602502_96604339_96604498_96614844
20670	chr18	+	2760	22	NNC	ENSMUSG00000024271.9	novel	3466	22	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	258.998621066379	1	84	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCCCAACTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	24737017	24771858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24737190_24739913_24739993_24742686_24742762_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752232_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
20673	chr1	+	3639	17	FSM	ENSMUSG00000025915.15	ENSMUST00000171265.8	3680	17	43	-2	-6	0	multi-exon	TRUE	canonical	3	97	junction_4	18.6899036915657	167	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGGACTATTTCATGCT	9857	False	NA	NA	False	NA	NA	NA	9918539	9971070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
20674	chr12	+	2149	18	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	204.202609881345	10	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGGTGCCTGTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	21336431	21364836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355425_21356797_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
20675	chr4	-	2254	8	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	518	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	692.961641604132	6	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323262	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141303539_141304128_141305255_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
20676	chr3	+	3598	28	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-374	26456	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	132	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGGAAAAAACAGATGG	NA	False	NA	NA	False	NA	NA	NA	89908047	89955208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908299_89909585_89909781_89910551_89910611_89915565_89915672_89916418_89916634_89917738_89917821_89919992_89920047_89922436_89922524_89922607_89922806_89924007_89924077_89924421_89924590_89925711_89925781_89926463_89926651_89928205_89928378_89928548_89928824_89930737_89930913_89932357_89932542_89933899_89933988_89935405_89935509_89935644_89935681_89938598_89938677_89941370_89941482_89941958_89942006_89945674_89945775_89946155_89946324_89951006_89951118_89952160_89952238_89955075
20677	chr17	+	2639	9	Antisense	novelGene_ENSMUSG00000024006.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGTGCCCCATAAAGT	NA	False	NA	NA	False	NA	NA	NA	29189873	29201317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_29191203_29191251_29191651_29192018_29192116_29193257_29193350_29193517_29193646_29194793_29194910_29196512_29196576_29198176_29198282_29201007
20678	chr14	-	4421	15	NNC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	-59	690	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	150.104810321431	408	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGTCCCAAACCCAGACT	NA	False	NA	NA	False	NA	NA	NA	67953189	67913089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937869_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
20679	chr2	+	2814	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	72	0	57	0	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	225	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTGTGCATAGTTT	NA	False	NA	NA	False	NA	NA	NA	112209627	112244585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
20681	chr19	-	2356	9	Antisense	novelGene_ENSMUSG00000064646.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTCCCGGGAGGTCTAG	NA	False	NA	NA	False	NA	NA	NA	38062866	38043621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38043764_38045855_38045928_38046234_38046430_38048526_38048803_38051048_38051120_38057527_38057677_38058085_38058314_38060236_38060338_38061744
20683	chr11	-	2677	18	NNC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	-4	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	114.692668922204	1	57	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATCAACATTTTGTGACT	3653	False	NA	NA	False	NA	NA	NA	54846877	54801620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802318_54806318_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817525_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830612_54843103_54843222_54846846
20685	chr5	+	3656	13	NIC	ENSMUSG00000042328.14	novel	3345	14	NA	NA	27	-26	intron_retention	FALSE	canonical	3	34	junction_1	19.2462117484628	11	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTCCCAAAGGCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	112490992	112526241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_112491030_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112518611_112522745_112522879_112523218_112523328_112525824
20686	chr15	-	1326	9	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	1	95	junction_8	12737.1698331841	3	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	4347	False	NA	NA	False	NA	NA	NA	79966778	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966702
20687	chr1	-	2005	18	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	444.282836439047	88	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	78465498	78401721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78410379_78410487_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
20689	chr7	-	1891	10	NNC	ENSMUSG00000030605.16	novel	2125	10	NA	NA	-7	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	389.137507829816	7	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGACCCTCTGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	78798744	78783522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792679_78792731_78792799_78794994_78795127_78795369_78795493_78798642
20690	chr11	+	2031	15	NNC	ENSMUSG00000020430.13	novel	2923	15	NA	NA	-9	-793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	300.163875309499	1163	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGCCAATTGGATTCTG	NA	False	NA	NA	False	NA	NA	NA	3913999	3929211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923340_3923481_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
20691	chr6	-	2743	20	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	2	54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	200.720254330785	1	80	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGAGGGGCCAACTGCCT	7907	False	NA	NA	False	NA	NA	NA	124806396	124792328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801270_124801511_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
20692	chr15	+	2148	13	NNC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	10	-16	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	419.766304031183	1512	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTGTAGCAAAACTATGC	205	False	NA	NA	False	NA	NA	NA	38662197	38692671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38691021_38691855
20693	chr2	-	1810	3	NNC	ENSMUSG00000095362.8	novel	310	3	NA	NA	-12	-1005	intron_retention	FALSE	non_canonical	0	0	junction_2	156	56	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAAAGCTTTTAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	177482141	177474588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177476105_177476312_177476462_177481996
20694	chr5	+	2747	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	440	2775	61	-8	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	20	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACAACGTCTGAGTGAT	3135	False	NA	NA	False	NA	NA	NA	32616626	32650092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
20695	chr18	+	2713	18	NNC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_12	177.22519055171	11	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTTTTCTGTGTTGGGC	NA	False	NA	NA	False	NA	NA	NA	36877774	36890687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886720_36887605_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
20696	chr11	+	2911	10	NIC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	-4	2	intron_retention	FALSE	canonical	3	682	junction_1	157.466045722738	2	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCAAGGCTCCTTTCCT	1400	False	NA	NA	False	NA	NA	NA	120675106	120679925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678808_120678887_120678969_120679069_120679208_120679287
20697	chr12	+	3879	6	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	26	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	263.617450105261	1	186	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516916	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517334_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
20698	chr18	-	2622	13	NNC	ENSMUSG00000118030.2	novel	363	2	NA	NA	7150	22278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	72	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAGGCTCCCACAATCCC	NA	False	NA	NA	False	NA	NA	NA	35724476	35695293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35695341_35710600_35710673_35711468_35711510_35711954_35712069_35712316_35712434_35714221_35714347_35714647_35714771_35714966_35715137_35715765_35715900_35716929_35716974_35717566_35717938_35720686_35720906_35723431
20699	chr9	+	1736	8	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	78	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTCCAAGGCGACTGCCG	NA	False	NA	NA	False	NA	NA	NA	78385734	78388953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386819_78386908_78387057_78387133_78387433_78387524_78387705_78387797_78387968_78388917
20700	chr11	+	5055	21	NNC	ENSMUSG00000020412.17	novel	2650	20	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	87.7034064332737	52	44	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGAGTCTCCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	4587749	4635699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4607881_4607976_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
20701	chr19	+	2509	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	43	-1746	-3	1746	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	15	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8866259	8869991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
20702	chr3	-	2544	11	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	28	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	287.796386356744	1	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTCATGCTTCTGTAGAG	NA	False	NA	NA	False	NA	NA	NA	157737363	157716558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718088_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157728879_157728997_157732361_157732496_157737088
20704	chr1	-	2393	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2064.26858545573	1	92	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGACTTAATACTT	NA	False	NA	NA	False	NA	NA	NA	86287090	86278219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285177_86285828_86285946_86286927
20705	chrX	+	2138	10	ISM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	1662	3	-494	1	3prime_fragment	FALSE	canonical	3	553	junction_4	79.6603902688016	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCTGGCTCTTTAGGTT	7610	False	NA	NA	False	NA	NA	NA	73350265	73355465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
20706	chr7	-	2174	16	NNC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	376.048022937969	13	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102810	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143072586_143072623_143074120_143074178_143077877_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089668_143089745_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
20707	chr17	-	1623	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	-2	10	-2	-4	multi-exon	FALSE	canonical	3	373	junction_2	253.5	1864	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTGCAATGAAGAGCAT	NA	False	NA	NA	False	NA	NA	NA	71158204	71151209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71152268_71153166_71153394_71157866
20709	chr11	-	3147	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	37	2377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.1068669888635	107	59	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGACTCGGGTGGTGTG	2927	False	NA	NA	False	NA	NA	NA	95805680	95754391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95755703_95756617_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
20710	chr4	-	2996	15	NNC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-25	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	275.304293612782	1	99	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGAAGTTCATGAGCT	62	False	NA	NA	False	NA	NA	NA	48473368	48430866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_48431079_48433103_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467888_48468268_48468994_48469883_48470073_48473265
20711	chr10	-	2874	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	66.9842435867487	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	115198129	115176643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197811_115197865_115197956
20712	chr4	-	2058	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	41	9	20	-9	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	4588	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTGAGCCTGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	137084990	137047015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
20713	chr2	-	3369	5	NNC	ENSMUSG00000027109.17	novel	3870	5	NA	NA	21	-201	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	185.290818714798	2	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATTACATTGCTGGT	2926	False	NA	NA	False	NA	NA	NA	72810749	72767196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72810660
20714	chrX	+	2903	10	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	8	0	intron_retention	FALSE	canonical	3	728	junction_6	47.3648825477846	2	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5970	False	NA	NA	False	NA	NA	NA	73348625	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
20715	chr5	+	2584	13	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-4	0	intron_retention	FALSE	canonical	3	75	junction_1	255.698539408334	10	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815925	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33816072_33818686_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
20717	chr9	+	3706	22	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	36	junction_21	58.2356227330149	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	6621	False	NA	NA	False	NA	NA	NA	21232034	21266324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264469_21264977
20719	chr9	-	1815	7	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1696.49855093759	113	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTATTTCTAAGTGGTA	NA	False	NA	NA	False	NA	NA	NA	110775162	110768661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769034_110769095_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
20720	chr12	+	2029	6	NNC	ENSMUSG00000020570.16	novel	2019	5	NA	NA	-30658	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	117.014529012426	2	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGAATGCCCCGTTG	NA	False	NA	NA	False	NA	NA	NA	32973231	33026904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_32973345_33004286_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
20721	chr12	-	3485	13	NIC	ENSMUSG00000020664.11	novel	2544	14	NA	NA	-2	-287	intron_retention	FALSE	canonical	3	710	junction_4	68.8250600354906	6	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTACTGGTTATTCTGAG	NA	False	NA	NA	False	NA	NA	NA	31401415	31381562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
20722	chr10	+	1276	1	NIC	ENSMUSG00000023175.16	novel	1526	8	NA	NA	-1827	-1682	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGCCAGGGCACCTGTT	NA	False	NA	NA	False	NA	NA	NA	79543604	79544880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79543600_79544900
20723	chr4	-	1584	1	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	20577	2	18822	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	121	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTGTCTTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	141304958	141303374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141303400_141305000
20724	chr3	-	1170	3	ISM	ENSMUSG00000005625.16	ENSMUST00000140280.8	2120	7	-15	2247	-11	871	5prime_fragment	FALSE	canonical	3	1866	junction_2	135.5	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGAAGAGGTAAGTCAGG	NA	False	NA	NA	False	NA	NA	NA	94949874	94942262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_94943236_94943915_94944057_94949818
20725	chr3	-	1314	5	NNC	ENSMUSG00000005625.16	novel	695	6	NA	NA	319	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	879.429502575391	15	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCCTTTTGCTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	94942259	94940017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941562_94941762
20726	chr17	+	3021	5	NNC	ENSMUSG00000117055.3	novel	1733	2	NA	NA	-13349	1039	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	3.26917420765551	67	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTTTTAGTGGAACTAT	NA	False	NA	NA	False	NA	NA	NA	22893351	22910480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_22893506_22905293_22905368_22906456_22906513_22906703_22906831_22907870
20727	chr11	-	5112	6	ISM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	9213	101	-36	-101	intron_retention	FALSE	canonical	3	96	junction_4	13.3416640641263	3	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGATCTGTGTGGCCTC	NA	False	NA	NA	False	NA	NA	NA	70886050	70875017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70878254_70879892_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682
20728	chr6	+	3849	20	FSM	ENSMUSG00000030314.17	ENSMUST00000182793.8	2459	20	-7	-1383	2	-8	multi-exon	FALSE	canonical	3	6	junction_2	42.1345950463867	229	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTCTGAACAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	114620080	114837565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_114620112_114623897_114624019_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
20729	chr14	-	3147	20	Antisense	novelGene_ENSMUSG00000021913.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	96	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGGCCACATGGTGGC	NA	False	NA	NA	False	NA	NA	NA	32070104	32054164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_32054240_32054441_32054557_32054702_32054858_32055664_32055811_32057288_32057381_32059396_32059576_32059710_32059838_32061160_32061341_32061856_32062011_32062599_32062702_32063155_32063286_32063994_32064145_32065156_32065284_32066276_32066459_32066669_32066743_32066839_32066966_32067066_32067139_32068353_32068516_32068652_32068814_32069465
20731	chr18	-	2866	10	NNC	ENSMUSG00000038425.19	novel	3504	10	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	119.510524357057	336	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGCTCTCACTGTAAGTT	NA	False	NA	NA	False	NA	NA	NA	70663310	70641753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70661772_70661899_70662821
20732	chr4	-	2025	5	NIC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-6	intron_retention	FALSE	canonical	3	1694	junction_1	131.788419445716	5	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAACTTCTTTTTGTGTG	-1	True	NA	NA	False	NA	NA	NA	41098183	41092727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41093703_41093781_41094385_41094700_41094839_41095144_41095272_41098001
20733	chr9	-	1365	1	Antisense	novelGene_ENSMUSG00000032216.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTCCCACTGACTGTAA	6186	False	NA	NA	False	NA	NA	NA	72657129	72655764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72655800_72657100
20734	chr17	-	2264	12	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	-6	0	intron_retention	FALSE	canonical	3	1453	junction_5	337.316365714017	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906434	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
20735	chr14	-	2569	17	NNC	ENSMUSG00000037544.15	novel	4067	17	NA	NA	-2	-821	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	127.153926772829	8	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAAATAAATGTCAAG	NA	False	NA	NA	False	NA	NA	NA	47655659	47628115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47628538_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
20736	chr3	+	3308	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	-24	8	-24	-8	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	289	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATAACTTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	7568518	7618888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
20737	chrX	-	3160	14	NIC	ENSMUSG00000031143.5	novel	2353	17	NA	NA	161	0	intron_retention	FALSE	canonical	3	194	junction_9	22.1789387808296	8	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACGCTTAGGCATGGAT	NA	False	NA	NA	False	NA	NA	NA	7471595	7460048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463972_7465396_7465975_7466859_7466993_7470398_7470577_7471482
20738	chrUn_JH584304v1	-	2295	8	Intergenic	novelGene_4601	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	73	junction_4	272.228595418015	18	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATCTTCTGTCTTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	59668	52186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55212_55293_55702_56985_57152_58563_58836_59591
20740	chr14	+	1041	1	NIC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	2	-3810	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAAATGATTTGAAGGC	NA	False	NA	NA	False	NA	NA	NA	45567286	45568327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_45567300_45568300
20741	chr8	-	3802	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	-329	1703	-329	-7	multi-exon	FALSE	canonical	3	27	junction_11	35.6008635794598	167	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACTTTTG	9359	False	NA	NA	False	NA	NA	NA	25592721	25530862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
20742	chr16	-	2858	24	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-22	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_23	100.853409500817	2	24	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTAAAGAAAATTTCCTA	NA	False	NA	NA	False	NA	NA	NA	13485868	13355846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483761_13483846_13485397_13485476_13485737
20743	chr8	-	2874	4	FSM	ENSMUSG00000046691.15	ENSMUST00000177068.8	2931	4	27	30	27	1	multi-exon	FALSE	canonical	3	308	junction_2	18.5472369909914	324	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTGTCGCTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	107620198	107610524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107620132
20744	chr15	-	2132	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	339	875	-110	-875	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	18	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTGTAGGGTCATACCT	NA	False	NA	NA	False	NA	NA	NA	81283905	81248744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
20745	chr7	-	2523	7	ISM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	2425	0	2378	0	3prime_fragment	FALSE	canonical	3	90	junction_4	10.9911580625317	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	19652660	19637502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486
20746	chr5	+	3842	33	NNC	ENSMUSG00000041638.19	novel	8555	58	NA	NA	-6	-11434	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	131.610872936091	1	70	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCCAAACACCTGGACAAG	NA	False	NA	NA	False	NA	NA	NA	115703324	115737239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720437_115723864_115723958_115725847_115725924_115726034_115726195_115726992_115727183_115727259_115727385_115728303_115728483_115729032_115729127_115730123_115730238_115730367_115730567_115731635_115731792_115732091_115732274_115732521_115732578_115733051_115733133_115733351_115733496_115734914_115735043_115735124_115735315_115735432_115735504_115736759_115736926_115737130
20747	chr12	-	6581	21	FSM	ENSMUSG00000021188.15	ENSMUST00000021605.14	9873	21	130	3162	3	341	multi-exon	TRUE	canonical	3	11	junction_20	4.94064773081425	108	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTATGTGGTTCGTCTTT	7551	False	NA	NA	False	NA	NA	NA	101879396	101803463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_101804026_101811038_101811184_101811316_101811434_101811990_101812106_101812854_101812937_101828851_101828952_101838082_101838187_101839581_101839746_101844213_101844408_101845047_101845189_101849514_101852536_101853066_101853280_101855963_101856051_101856836_101856878_101859689_101860053_101860520_101860687_101861909_101861976_101865083_101865363_101868490_101868602_101872013_101872076_101878948
20748	chr2	+	2861	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	39	0	39	0	multi-exon	FALSE	canonical	3	217	junction_2	7.5	400	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	156681965	156697490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_156682159_156686075_156686302_156695048
20749	chr10	-	2753	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	51	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1128.35136187614	1	115	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGATCCCAAATACTC	NA	False	NA	NA	False	NA	NA	NA	86541322	86526720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527607_86527999_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539464_86540157_86540261_86541170
20750	chr10	-	2010	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	101	178	21	-178	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	1	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358212	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
20751	chr9	+	1347	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-5	-147	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	7911.15370306887	2	27	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080669	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082839_64083022_64083447_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
20752	chr3	+	2020	10	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	86	-2	intron_retention	FALSE	canonical	2	6	junction_4	503.200644761996	1916	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCATCATGTTGAGATC	NA	False	NA	NA	False	NA	NA	NA	97066178	97083832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075131_97075176_97075302_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
20753	chr7	+	1388	12	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	523.061237190484	19	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	60	False	NA	NA	False	NA	NA	NA	5065268	5082932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078539_5082666
20754	chr9	+	1828	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	605.847967727878	1	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGTATTCTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	108183631	108215132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183689_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
20756	chr9	+	2330	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	115.083646738761	1	59	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385300	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385363_108385614_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
20757	chr17	+	1688	8	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	938.301918252285	4	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGTTGTTTAACTTGA	NA	False	NA	NA	False	NA	NA	NA	29251646	29261067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258485_29258545_29258884_29259748_29259788_29260180_29260268_29260357
20758	chr9	-	3464	13	FSM	ENSMUSG00000010205.12	ENSMUST00000115487.3	3470	13	5	1	5	-1	multi-exon	FALSE	canonical	3	416	junction_7	41.8140725912541	381	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGAGCTGGCTGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	21003299	20985454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
20761	chr4	+	2569	13	NNC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	22805	26708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	83	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCGCGCGACCCACTTCC	NA	False	NA	83	True	NA	NA	NA	122752851	122779676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_122754011_122755726_122755867_122756193_122756281_122756415_122756541_122756687_122756881_122758374_122758550_122758961_122759068_122761276_122761359_122761440_122761589_122763486_122763564_122765188_122765290_122766123_122766252_122779628
20762	chr10	-	2422	10	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	1183	-880	intron_retention	FALSE	canonical	0	0	junction_4	660.926024511475	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCAAAATCCACCGTCGT	9993	False	NA	NA	False	NA	NA	NA	128400555	128394516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395400_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399199_128399445
20763	chrX	+	2786	7	Antisense	novelGene_ENSMUSG00000035150.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	95	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAGAAAAGGAAAATGCT	NA	False	NA	NA	False	NA	NA	NA	93232316	93256246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93234529_93239877_93239992_93248676_93248749_93252933_93253023_93253110_93253266_93255320_93255388_93256169
20764	chr11	-	2684	12	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	21	-69	intron_retention	FALSE	canonical	3	937	junction_7	76.2727814497586	2	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCGGGCTGTGACCCTCT	4536	False	NA	NA	False	NA	NA	NA	6217725	6208987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6215757_6216315_6216407_6216511_6216972_6217417_6217580_6217659
20765	chr11	-	1719	5	FSM	ENSMUSG00000014195.17	ENSMUST00000136199.3	1053	5	112	-778	112	2	multi-exon	FALSE	canonical	3	2470	junction_1	167.330511264384	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTTTTGACCGTTC	NA	False	NA	NA	False	NA	NA	NA	100481248	100473662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723
20766	chr14	+	3101	8	ISM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	22404	358	932	-358	3prime_fragment	FALSE	canonical	3	1379	junction_2	109.986826669453	14	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGTTTCTTTTCTGTGT	1618	False	NA	NA	False	NA	NA	NA	34055087	34066864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_34056249_34057258_34057397_34058049_34058188_34058452_34058534_34060716_34060841_34061883_34061976_34064075_34064139_34065560
20767	chr4	-	4609	6	NIC	ENSMUSG00000028617.11	novel	1755	8	NA	NA	57	-2	intron_retention	FALSE	canonical	3	195	junction_5	9.04654630231891	9	113	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATTCTGCTTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	107110672	107090715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_107093082_107096274_107096389_107096908_107098218_107100404_107100537_107104490_107104978_107110471
20768	chrX	+	3193	12	Antisense	novelGene_ENSMUSG00000031297.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	114	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGTCACATGGCTTTGCA	NA	False	NA	NA	False	NA	NA	NA	100122832	100129631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_100123202_100123307_100123413_100123704_100124480_100125303_100125405_100125498_100125642_100125800_100126022_100126140_100126258_100126401_100126577_100126756_100126916_100127477_100127884_100128879_100129063_100129192
20769	chr11	-	361	3	ISM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	2961	3444	-487	151	internal_fragment	FALSE	canonical	3	4137	junction_2	151	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTCCTGAAAGACTAT	NA	False	NA	NA	False	NA	NA	NA	106676359	106675817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106675879_106675961_106676123_106676220
20770	chr4	-	4738	10	NIC	ENSMUSG00000053841.16	novel	4569	11	NA	NA	-28	-3	intron_retention	FALSE	canonical	3	279	junction_9	29.6048044148994	282	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTGTATCTCAGCCAAT	7919	False	NA	NA	False	NA	NA	NA	129534799	129519878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
20771	chr1	-	4623	9	FSM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	19	-2886	19	-6	multi-exon	FALSE	canonical	3	24	junction_8	13.3041346956501	331	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAACTTTTTAAATCCTT	NA	False	NA	NA	False	NA	NA	NA	136881349	136770314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136881231
20774	chr15	-	3165	8	FSM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	-6	-2	-1	0	multi-exon	FALSE	canonical	3	86	junction_6	194.457277192347	1	119	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033538	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
20775	chr4	+	2521	5	Antisense	novelGene_ENSMUSG00000041459.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAAACTGGGCTGTAACT	NA	False	NA	NA	False	NA	NA	NA	148701328	148709710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_148703251_148703642_148703815_148705053_148705193_148706408_148706573_148709586
20776	chr11	-	2088	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1573.67089201932	2	60	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGCCTTCCAATAAAAGAT	9654	False	NA	NA	False	NA	NA	NA	106679320	106672405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675338_106675819_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677878_106679156
20777	chr16	+	4450	26	NIC	ENSMUSG00000022770.18	novel	6143	26	NA	NA	-20	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	79.943980386268	207	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTAAATGTGTCTTGAA	NA	False	NA	NA	False	NA	NA	NA	31482240	31692168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_31482307_31483638_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31590574_31590674_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
20778	chr8	+	3247	15	FSM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	4	0	3	0	multi-exon	FALSE	canonical	3	239	junction_7	19.6926641267291	166	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	NA	NA	NA	88864486	88898655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
20779	chr3	+	2629	13	NNC	ENSMUSG00000027775.10	novel	3011	16	NA	NA	2906	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	243.599511949885	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTATTTGGAGGATAAAT	NA	False	NA	NA	False	NA	NA	NA	67494984	67511564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67495055_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
20781	chr15	+	3036	10	NIC	ENSMUSG00000042303.20	novel	2997	22	NA	NA	15	180	intron_retention	FALSE	canonical	3	134	junction_4	14.8980071581387	4	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAAGCCTCCCATCTTTT	NA	False	NA	NA	False	NA	NA	NA	80892153	80896270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80893480_80893607_80893736_80893834_80893991_80894141_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
20782	chr6	+	5403	8	NNC	ENSMUSG00000030204.11	novel	4006	10	NA	NA	23	-6	intron_retention	FALSE	canonical	0	0	junction_4	189.189894884824	2	212	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTACCTGTGTGTGTCTG	6638	False	NA	NA	False	NA	NA	NA	134988638	135000729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992604_134992784_134993617_134994083_134995161_134995936_134998542_135000241
20783	chr2	-	2317	23	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-4859	-227	combination_of_known_junctions	FALSE	canonical	2	8	junction_16	76.0198429946131	8	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCAAGAAGTTGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	103578561	103552232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565262_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530
20784	chr7	+	4038	7	NIC	ENSMUSG00000066979.7	novel	2218	8	NA	NA	5	4	intron_retention	FALSE	canonical	3	1325	junction_5	32.3367695768558	3	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAAAAGTTGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	131162113	131172897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131168081_131169912_131170091_131170233_131170451_131172607
20785	chr11	+	1437	1	NIC	ENSMUSG00000000275.17	novel	1433	5	NA	NA	76	-12814	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCTGCCTCTGCCTCCC	NA	False	NA	NA	False	NA	NA	NA	88890277	88891714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88890300_88891700
20786	chr8	-	3217	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	3	-1663	3	1663	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	740	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTTTTGGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	14140298	14075897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
20787	chr8	+	2591	6	NIC	ENSMUSG00000031799.11	novel	2044	8	NA	NA	42	-18	intron_retention	FALSE	canonical	3	103	junction_1	264.051055669164	3	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTTGCATAAATAATG	NA	False	NA	NA	False	NA	NA	NA	72889693	72906966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72901112_72905585
20789	chr18	+	1767	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	-9	0	-9	0	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	1966	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGTCTCTTGAACTTC	NA	False	NA	NA	False	NA	NA	NA	67523777	67535819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
20790	chr16	+	3058	5	Antisense	novelGene_ENSMUSG00000022828.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATGAGATGATTTGCC	NA	False	NA	NA	False	NA	NA	NA	37330167	37360185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_37332180_37336078_37336325_37343114_37343314_37356081_37356553_37360055
20791	chr2	+	2639	13	NNC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	23	-303	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	140.277997799607	497	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTGTTGGATCCCAT	NA	False	NA	NA	False	NA	NA	NA	25162512	25175624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25162651_25162926_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
20792	chr17	+	2081	14	NNC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-911	7192	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGGTCCGCCCCGGGCC	NA	False	NA	NA	False	NA	NA	NA	45896134	45906495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45896708_45897018_45897232_45898153_45898240_45898487_45898597_45899214_45899312_45899926_45900000_45900132_45900235_45900345_45900475_45900606_45900743_45900846_45901054_45901181_45901262_45903101_45903188_45904257_45904363_45906410
20793	chr1	+	1163	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	8	47	8	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	1365	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACACCTCCATTGAAGAG	NA	False	NA	NA	False	NA	NA	NA	60743098	60744261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743100_60744300
20794	chr8	-	2303	9	NNC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	-45	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	212.348144270205	127	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGTTGGTCAAATGA	NA	False	NA	NA	False	NA	NA	NA	110419937	110397957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_110399274_110403385_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
20795	chr6	-	3192	16	FSM	ENSMUSG00000005069.13	ENSMUST00000035861.6	3139	16	-48	-5	-18	5	multi-exon	FALSE	canonical	3	29	junction_9	30.6939009504422	274	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACGTGGGTAGGTTCCGC	NA	False	NA	NA	False	NA	NA	NA	124392044	124373785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381091_124381203_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
20799	chr12	-	3090	13	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	1240	-14	intron_retention	FALSE	canonical	0	0	junction_10	66.9369520934107	7	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTTCTTCTACAAT	NA	False	NA	NA	False	NA	NA	NA	84660921	84649320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84653083_84655343_84655434_84655579_84655672_84655748_84656248_84658494_84658546_84659096_84659225_84659553_84659671_84660678
20800	chr11	-	3407	5	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	54	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCATAAGAAAAGTGACATA	1334	False	NA	NA	False	NA	NA	NA	50277347	50272467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50273888_50274005_50274142_50274506_50275563_50275966_50276016_50276601
20801	chr15	+	1369	11	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	178	5245	3	-275	5prime_fragment	FALSE	canonical	3	1727	junction_10	116.36670486011	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTTGCATCGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	81756687	81794089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042
20802	chr16	-	2044	7	NIC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	-10	-2	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	170.91583373761	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATGTGCGCATGTGCAC	NA	False	NA	NA	False	NA	NA	NA	5073857	5062017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_5063250_5065316_5065464_5066428_5066695_5067210_5067313_5068338_5068420_5070888_5070952_5073704
20803	chr8	-	1945	9	NIC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	-28	0	intron_retention	FALSE	canonical	3	742	junction_2	39.496835316263	1469	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	NA	False	NA	NA	NA	31658758	31649490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656788_31658692
20804	chrX	+	1807	8	NNC	ENSMUSG00000031007.3	novel	2324	9	NA	NA	8451	-81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	374.576713485655	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGGTTTAAATTTTCCT	NA	False	NA	NA	False	NA	NA	NA	12462490	12483207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920_12481953_12482026
20805	chr7	+	2423	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	57	3	0	-3	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	582	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTATCTTGAGTTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	83281223	83291533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
20806	chr4	-	2713	20	NNC	ENSMUSG00000028678.14	novel	2842	20	NA	NA	-3	5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	108.554414658402	2	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTCTGTGTGATTATC	NA	False	NA	NA	False	NA	NA	NA	117039742	117016830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027155_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
20807	chrX	-	2735	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	188	3	1	-3	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	311	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATATGTGCTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	10082971	10024457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
20808	chr3	+	2339	7	NIC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	32	-510	intron_retention	FALSE	canonical	3	3249	junction_3	144.897281624681	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTTAGAGGTCACCTGC	NA	False	NA	NA	False	NA	NA	NA	89986878	90007693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995784_89997103_89997167_89997316_89997387_90006834
20809	chr8	+	1751	6	NIC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	953	-5	intron_retention	FALSE	canonical	3	2216	junction_1	100.970094582505	2	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGAATGCATGGCTCCA	NA	False	NA	NA	False	NA	NA	NA	84447194	84449898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84447770_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
20810	chr16	-	1690	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	-4	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45973462_45973860
20812	chrX	+	904	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	44	4224	44	-4224	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTAAGCCCTGCCTT	5391	False	NA	NA	False	NA	NA	NA	158155217	158168700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
20813	chr11	-	3211	4	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	10	-3	intron_retention	FALSE	canonical	0	0	junction_3	484.868596173804	6	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCCCCCAGAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	120534564	120530244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120531175_120531967_120532132_120532254_120533789_120533981
20814	chr16	+	2446	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14142	489	-7418	-426	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	101	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGTTTCTACTTCTAT	NA	False	NA	NA	False	NA	NA	NA	36528481	36546677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
20815	chr13	-	2770	4	NNC	ENSMUSG00000074865.12	novel	1653	4	NA	NA	-81991	1150	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	58.3495215633056	34	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCTCATAAAAATGTAATG	NA	False	NA	NA	False	NA	NA	NA	62801004	62633309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62635805_62640180_62640241_62640621_62640749_62800916
20816	chr4	+	3049	8	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	2	0	intron_retention	FALSE	canonical	3	85	junction_1	45.1781055876604	330	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8294	False	NA	NA	False	NA	NA	NA	156194477	156211720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
20817	chr3	-	2438	12	NNC	ENSMUSG00000005813.13	novel	2686	11	NA	NA	54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.430637143117	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	138195222	138164716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_138165863_138166056_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
20818	chr3	+	5386	15	NIC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	-23	-564	intron_retention	FALSE	canonical	3	253	junction_5	29.4247570343514	5	106	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGCCATGTCTCCCTACC	NA	False	NA	NA	False	NA	NA	NA	88243594	88266380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88262015_88262884_88263044_88265959_88266020_88266333
20819	chr2	-	2505	7	NNC	ENSMUSG00000058835.15	novel	2790	8	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	117.731922415102	13	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTGGATATTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	22930187	22830379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_22832060_22836587_22836698_22850817_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
20820	chr2	+	1611	6	FSM	ENSMUSG00000042133.17	ENSMUST00000124810.8	598	6	-13	-1000	-13	1000	multi-exon	FALSE	canonical	3	282	junction_1	52.1904205769603	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAATGGCTCTCAGTTC	NA	False	NA	NA	False	NA	NA	NA	69553184	69564697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532
20822	chr18	-	2261	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	89	2376	15	152	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	5	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGATTAACAACTTTTGAC	29	True	NA	NA	False	NA	NA	NA	10030052	9995441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
20823	chr10	+	2749	10	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	-12	-23	intron_retention	FALSE	canonical	0	0	junction_8	299.516812529204	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTGCAATAAAATCTTGAA	NA	False	NA	NA	False	NA	NA	NA	21870597	21875767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871798_21871924_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873957_21874058_21874149_21874558
20824	chr10	-	2957	7	NIC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	4	-535	intron_retention	FALSE	canonical	3	682	junction_2	235.829505269285	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCAAGGTGAAAGACACTT	8283	False	NA	NA	False	NA	NA	NA	128540864	128534349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128539697_128539794_128539873_128540580
20825	chr2	+	2217	16	NNC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	321.680130979	17	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7225	False	NA	NA	False	NA	NA	NA	29779828	29812551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802683_29804395_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
20826	chr4	+	2555	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	4	2573	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	129.181422813035	1	102	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACAAGGTTGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	147576877	147600516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597077_147597713_147598185_147599020
20829	chr17	-	3652	21	NIC	ENSMUSG00000019214.15	novel	3208	22	NA	NA	4	-5	intron_retention	FALSE	canonical	3	29	junction_13	173.616387475376	9	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGAGTGTGGGTCAGGCT	5678	False	NA	NA	False	NA	NA	NA	25946389	25938025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943050_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
20830	chr5	-	2998	5	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-12	0	intron_retention	FALSE	canonical	3	174	junction_4	106.198811198619	8	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794416	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791685_34791766_34793851_34793937_34794128_34794270
20831	chr12	-	1969	5	FSM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	-30	3	-14	2	multi-exon	FALSE	canonical	3	16	junction_4	22.1697992773954	1243	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008989	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
20832	chr9	-	2083	12	FSM	ENSMUSG00000056131.14	ENSMUST00000186193.7	2116	12	-6	39	-6	-39	multi-exon	FALSE	canonical	3	372	junction_6	45.4649079097238	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTGAATGCGGACTCAG	NA	False	NA	NA	False	NA	NA	NA	86453852	86437772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
20833	chr8	-	4516	6	NNC	ENSMUSG00000056204.9	novel	720	6	NA	NA	-24	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	76.6602895898522	1	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGCATCCAGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	71112342	71099086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71102470_71102788_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
20834	chr7	-	2804	16	NIC	ENSMUSG00000031078.16	novel	3286	18	NA	NA	-6	-2	combination_of_known_splicesites	FALSE	canonical	3	53	junction_8	296.382455621111	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTACTGTGTGATCTTCT	NA	False	NA	NA	False	NA	NA	NA	144024488	143989473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
20835	chr18	-	3042	27	NNC	ENSMUSG00000044252.19	novel	3956	28	NA	NA	12176	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	135.693637704977	1	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTACAGAGAAGTCAAGGT	NA	False	NA	NA	False	NA	NA	NA	13062658	12889262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038317_13039018_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13062348
20837	chr1	+	5736	3	NIC	ENSMUSG00000026349.15	novel	4511	10	NA	NA	1294	-182	intron_retention	FALSE	canonical	3	163	junction_2	138	1	202	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTTTGTTGAATCTTCA	NA	False	NA	NA	False	NA	NA	NA	127725601	127733487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_127727291_127729342_127731031_127731128
20839	chr8	+	2565	5	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	1740	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1212.84734715462	13806	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAGATTAAACCTCCTT	NA	False	NA	NA	False	NA	NA	NA	112667389	112681984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946_112680081_112680877
20840	chr6	+	1873	7	Genic_Genomic	ENSMUSG00000097525.3	novel	1466	3	NA	NA	-14210	-917	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2184	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGTCTGCACGGCGGA	NA	False	NA	NA	False	NA	NA	NA	127063049	127086513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_127063553_127064359_127065263_127066152_127066267_127068146_127068225_127069583_127069705_127078810_127078850_127086398
20841	chr5	-	2545	9	FSM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	754	-1150	-15	0	multi-exon	FALSE	canonical	3	230	junction_2	358.236915322807	2547	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
20842	chr2	-	4113	5	NIC	ENSMUSG00000050043.17	novel	1977	8	NA	NA	3	-1	intron_retention	FALSE	canonical	3	1517	junction_3	91.1382877829071	67	133	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGCCTTGCTGTTTTTCC	5232	False	NA	NA	False	NA	NA	NA	84508459	84501661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84502877_84503367_84505826_84506088_84506203_84506440_84506502_84508194
20843	chr4	-	4850	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	82	-3007	1	282	multi-exon	FALSE	canonical	3	10	junction_9	18.219511993573	379	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCACCACCACTGCCATA	1994	False	NA	NA	False	NA	NA	NA	131988831	131949974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
20844	chrX	+	3094	4	NNC	ENSMUSG00000094004.8	novel	3677	5	NA	NA	24	7	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	99.5735350828165	7	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGGTTCTTCGTGAAT	NA	False	NA	NA	False	NA	NA	NA	134274056	134284149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134274160_134274357_134274485_134280709_134280862_134281437
20845	chrX	-	3434	3	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	-8	327	intron_retention	FALSE	canonical	3	11043	junction_2	2926.5	10	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCATGTAGAGTGAATA	NA	False	NA	NA	False	NA	NA	NA	101232950	101228219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101231978_101232903
20850	chr6	+	2133	11	NNC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	31	569	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	749.626980571004	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATTTGCTTTTGCTGTA	568	False	NA	NA	False	NA	NA	NA	88061494	88080938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88061621_88061741_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
20851	chr10	-	2425	21	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-25	-959	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	265.502631813698	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845595	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824004_77824704_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
20852	chr15	-	1957	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	371	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	39	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056422	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038353_83038445_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
20853	chr2	-	3363	16	NNC	ENSMUSG00000098950.8	novel	4955	16	NA	NA	-29	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	110.526296519074	1	88	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTCAGTGGCCGCTCT	NA	False	NA	NA	False	NA	NA	NA	155953880	155913769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921310_155921385_155953747
20854	chr5	-	3085	18	NIC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	62	8	combination_of_known_splicesites	FALSE	canonical	1	5	junction_11	53.7340625764408	1	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGCCAGACCTCTCTT	1011	False	NA	NA	False	NA	NA	NA	36987935	36964256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
20855	chr17	+	3317	15	NNC	ENSMUSG00000002835.10	novel	5535	14	NA	NA	-77	-805	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	128.154821069148	291	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTGTCTTCTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	56347361	56375027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56347552_56351061_56351113_56353822_56354522_56354567_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
20857	chr5	+	1933	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1501.96799545629	1	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	754	False	NA	NA	False	NA	NA	NA	77099621	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104395_77104604_77107249_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114250_77114494
20858	chr11	+	1259	11	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	22	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCCAAGGAAAGGACGCGG	NA	False	NA	NA	False	NA	NA	NA	33102547	33113067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33104060_33106001_33106107_33106640_33106748_33106990_33107049_33109933_33109995_33110333_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
20860	chr4	-	4170	7	NIC	ENSMUSG00000028923.15	novel	1906	8	NA	NA	10	-6	intron_retention	FALSE	canonical	3	431	junction_1	26.7810048770061	17	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACATCTCAGATGGATAT	8510	False	NA	NA	False	NA	NA	NA	140805643	140793828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_140794924_140795505_140795591_140797366_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
20862	chr6	+	1774	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-11	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2359.7158709759	4	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGTGTGTTTTTCATAA	5177	False	NA	NA	False	NA	NA	NA	85429062	85445368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443697_85444008_85444142_85444560_85444768_85445038
20864	chr2	+	1880	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	20	-709	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1162.02890096016	759	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGTCGTTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	121244383	121268459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264128_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
20865	chr4	+	2283	12	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	1	-408	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	608.935896149861	2	52	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCACTGTCAAGTTCAAAT	856	False	NA	NA	False	NA	NA	NA	129083695	129112992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090765_129090905_129091082_129094518_129094649_129099921_129100003_129103421_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
20866	chr2	-	2815	5	FSM	ENSMUSG00000009030.15	ENSMUST00000147703.3	685	5	-47	-2083	10	-1	multi-exon	FALSE	canonical	2	4	junction_4	84.8130296593631	575	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCTGTATATTAGATATT	NA	False	NA	NA	False	NA	NA	NA	37249255	37240086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37248363_37248411_37249154
20868	chr13	-	2321	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	74	94	-10	3	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	2	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTCACAATTCTCATTTG	NA	False	NA	NA	False	NA	NA	NA	100923004	100915251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
20869	chr4	+	3446	21	NNC	ENSMUSG00000028405.10	novel	3832	21	NA	NA	334	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	74.5025335139685	1	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACGTGTTGGCTTTG	8	True	NA	NA	False	NA	NA	NA	40143414	40198331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186396_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
20870	chr18	+	2693	13	NNC	ENSMUSG00000037236.17	novel	1846	14	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	450.563189242086	1	70	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35695226	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695313_35710610_35710703_35711947_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721390_35721507_35723432
20871	chr6	-	5207	24	NNC	ENSMUSG00000040029.16	novel	5360	25	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	68.0066715286137	11	140	14	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTGAACTCTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	148732953	148672190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148674308_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719457_148719621_148723092_148723250_148725901_148725984_148732661
20872	chr9	-	447	2	ISM	ENSMUSG00000076138.3_ENSMUSG00000037742.15	ENSMUST00000129380.2	845	3	718	-231	-363	-4	3prime_fragment	FALSE	canonical	3	15409	junction_1	0	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	9826	False	NA	NA	False	NA	NA	NA	78386280	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239
20873	chr5	+	2171	6	Antisense	novelGene_ENSMUSG00000088712.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCATTACTACAACGAAACA	NA	False	NA	NA	False	NA	NA	NA	92201367	92212357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92202913_92203242_92203364_92204131_92204256_92205821_92205930_92211195_92211294_92212182
20874	chr12	+	2945	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	7	7	7	-7	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	880	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAATTTCAGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	8363438	8393817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
20875	chr6	+	3097	23	Fusion	ENSMUSG00000030088.16_ENSMUSG00000108111.2	novel	653	5	NA	NA	1	0	multi-exon	FALSE	canonical	0	0	junction_1	47.2324128797829	29	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	750	False	NA	NA	False	NA	NA	NA	90463375	90576151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_+_90463514_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
20876	chr15	-	1637	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	159	7	159	-7	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	6500	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAAAGTTGTCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	98851425	98847724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
20877	chr1	-	4709	23	Antisense	novelGene_ENSMUSG00000036104.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCGTCAGGCCCCGCGCG	NA	False	NA	NA	False	NA	NA	NA	127868872	127796538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127796565_127796659_127796716_127801814_127801891_127816890_127817025_127818753_127818833_127829314_127829433_127831402_127831575_127837587_127837686_127843373_127843456_127845955_127846027_127847304_127847375_127852460_127852556_127853009_127853175_127855192_127855287_127855685_127855858_127858125_127858176_127858437_127858814_127862151_127862287_127865070_127865301_127865723_127865821_127865932_127866039_127866311_127866431_127866784
20879	chr3	+	1937	9	NNC	ENSMUSG00000078578.10	novel	2504	8	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1142.5234064889	23	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	NA	False	NA	NA	NA	135144212	135172436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144324_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955_135171300_135171483
20880	chr17	-	3167	16	NIC	ENSMUSG00000024206.16	novel	3350	18	NA	NA	16	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_15	59.2522292126353	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCTGGTGTCCGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	57137992	57082899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57137882
20881	chr11	-	2630	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	-10	60	at_least_one_novel_splicesite	FALSE	canonical	3	272	junction_13	66.0623696698092	642	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATAATGTCCATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	57409453	57373758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57409398
20882	chr5	+	2933	17	FSM	ENSMUSG00000014668.16	ENSMUST00000198633.5	2623	17	-1	-309	-1	-1	multi-exon	FALSE	canonical	3	10	junction_5	84.7737568104068	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTGTGTTGTACTCCT	NA	False	NA	NA	False	NA	NA	NA	110283721	110319834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
20883	chr18	-	2113	20	NNC	ENSMUSG00000053644.14	novel	4131	20	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.326696364102	1385	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	2904	False	NA	NA	False	NA	NA	NA	56705973	56659815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_56660134_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
20884	chr15	-	1766	14	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	465.837961009147	3	30	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTCCCTTTGGTTTCTTC	2745	False	NA	NA	False	NA	NA	NA	77855013	77843217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851573_77852656_77852790_77854882
20885	chrX	-	2225	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	11	1	7	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	2271	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGGTTGTTTTATTTTA	NA	False	NA	NA	False	NA	NA	NA	47602429	47563821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
20887	chr2	-	3147	2	ISM	ENSMUSG00000027341.11	ENSMUST00000110164.8	2957	3	1624	0	1624	0	intron_retention	FALSE	canonical	3	576	junction_1	0	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	6647	False	NA	NA	False	NA	NA	NA	132087950	132081411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_132082547_132085938
20888	chr16	-	3262	17	FSM	ENSMUSG00000012114.18	ENSMUST00000080936.14	3230	17	-33	1	-15	-1	multi-exon	FALSE	canonical	3	37	junction_9	64.8068946467118	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCAGGAGTTTATTGC	NA	False	NA	NA	False	NA	NA	NA	17540794	17469085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
20889	chr2	+	1622	4	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	205	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	684.4683257017	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143757444	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757560_143780380_143780613_143781871_143781949_143784046
20890	chr9	-	4707	8	FSM	ENSMUSG00000036943.10	ENSMUST00000041139.9	4733	8	26	0	26	0	multi-exon	FALSE	canonical	2	19	junction_5	12.9992150469455	41	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACTCTTAAGTGGATT	7777	False	NA	NA	False	NA	NA	NA	66826943	66750945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
20891	chrX	+	3870	5	FSM	ENSMUSG00000094004.8	ENSMUST00000113173.8	3677	5	-28	-165	-28	-2	multi-exon	FALSE	canonical	3	153	junction_2	39.7955713616478	78	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGTTTTTATTGGTTC	NA	False	NA	NA	False	NA	NA	NA	134274004	134284140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134274160_134274357_134274485_134278675_134278976_134280276_134280862_134281437
20892	chr10	-	3111	6	NIC	ENSMUSG00000000901.18	novel	1793	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	211	junction_5	11.1247471881387	28	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCGCCTGTCTGTTTTTC	5083	False	NA	NA	False	NA	NA	NA	75768309	75759058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75759950_75761253_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
20894	chr13	-	4562	10	NNC	ENSMUSG00000032621.9	novel	6330	10	NA	NA	211	816	intron_retention	FALSE	canonical	3	8	junction_7	70.543043510004	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTTTATTTTTTTGGT	8961	False	NA	NA	False	NA	NA	NA	103900879	103877303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103897032_103897103_103897537_103897703_103900389
20895	chr13	+	3090	20	NIC	ENSMUSG00000021314.14	novel	3367	21	NA	NA	6	-2	combination_of_known_splicesites	FALSE	canonical	3	8	junction_16	14.1794982896135	289	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGTTCTTTTTCAAGAG	NA	False	NA	NA	False	NA	NA	NA	19132526	19335089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305490_19321705_19321913_19323341_19323603_19326134_19326237_19333905
20896	chr9	+	3931	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	74.5949607095902	16	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	NA	False	NA	NA	NA	19533397	19561027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19557997
20897	chr3	+	1756	5	NNC	ENSMUSG00000027500.11	novel	2073	5	NA	NA	25	-8	intron_retention	FALSE	non_canonical	0	0	junction_4	788.751030110262	1	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTAATAACGGTTTGGT	NA	False	NA	NA	False	NA	NA	NA	8574670	8626658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625383
20898	chr8	+	3627	15	ISM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	91	4	30	-4	intron_retention	FALSE	canonical	3	239	junction_9	15.210261037087	3	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGAGCTGTTGATTT	NA	False	NA	NA	False	NA	NA	NA	105951867	105979681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350
20899	chr12	+	2596	22	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	-19	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	62.5021722978499	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCTACTGGCTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	17398439	17480089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115_17479427_17479863
20900	chr17	+	2909	18	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_11	47.4078235115662	19	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTGGACTTCCTAGGGT	NA	False	NA	NA	False	NA	NA	NA	64171025	64446491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288477_64288682_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
20902	chr16	+	4495	7	NIC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	-4	-3586	intron_retention	FALSE	canonical	3	32	junction_1	23.5613855468835	93	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAAGTACCTGAATCCT	NA	False	NA	NA	False	NA	NA	NA	19916319	19944385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_19916422_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
20904	chr12	+	1926	14	NNC	ENSMUSG00000112449.2	novel	3646	16	NA	NA	-1	-1233	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	257.012605313321	2	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2619	False	NA	NA	False	NA	NA	NA	55202153	55235125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55202366_55211014_55211125_55217704_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
20905	chr17	-	1261	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-216	2963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTCCAGCCATGGGGAA	NA	False	NA	NA	False	NA	NA	NA	35821664	35817010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
20907	chr12	-	5358	15	NNC	ENSMUSG00000021051.11	novel	4810	14	NA	NA	13	864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	53.7356055713756	121	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTTCTTGTTGTCTGGCT	NA	False	NA	NA	False	NA	NA	NA	75642989	75496790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_75500588_75506461_75506564_75509075_75509204_75511647_75511768_75513401_75513453_75513565_75513620_75515285_75515395_75516315_75516376_75516505_75516637_75531905_75531999_75540187_75540290_75562375_75562573_75639942_75640107_75642408_75642492_75642822
20908	chr2	-	3414	8	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	36	-3	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	27.4531140198659	128	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATATTCTGGTCTGGTA	1201	False	NA	NA	False	NA	NA	NA	35335809	35290197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35335707
20909	chr12	+	4257	36	NNC	ENSMUSG00000020576.11	novel	7234	52	NA	NA	5	-86174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	9.19866893654085	1	73	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACCACAACTACTACCAA	NA	False	NA	NA	False	NA	NA	NA	13319138	13482972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_13319266_13321164_13321220_13322657_13322695_13323788_13323867_13324175_13324224_13329388_13329433_13335183_13335318_13338671_13338806_13339882_13339982_13350093_13350233_13356904_13356974_13360176_13360306_13367698_13367763_13371645_13371840_13372856_13373115_13374269_13374396_13378336_13378489_13380617_13380759_13381024_13381104_13385831_13385937_13386274_13386412_13402783_13402868_13406824_13406979_13410935_13411118_13412442_13412617_13424696_13424831_13427434_13427498_13429647_13429771_13440925_13441029_13443303_13443534_13455374_13455488_13458194_13458309_13463528_13463643_13464784_13464943_13465645_13465733_13482897
20912	chr6	+	4164	13	FSM	ENSMUSG00000030207.16	ENSMUST00000111915.8	4221	13	53	4	53	0	multi-exon	TRUE	canonical	3	64	junction_6	10.7558123821495	95	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACACGTGTGTCCTTTTC	NA	False	NA	NA	False	NA	NA	NA	135175027	135213236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_135175100_135186030_135186430_135188832_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
20913	chr11	-	3144	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	-30	-824	-6	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	758	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGCCACTGGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	6576073	6565598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
20914	chr1	+	3278	7	ISM	ENSMUSG00000026280.18	ENSMUST00000135762.8	4186	12	21108	-2	8076	2	3prime_fragment	FALSE	canonical	3	280	junction_4	24.6604721951728	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACATGAATTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	93703874	93715903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
20915	chr18	+	2999	4	Antisense	novelGene_ENSMUSG00000024580.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCCAACACTACGCCTGC	NA	False	NA	NA	False	NA	NA	NA	61846579	61859382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_61849198_61851765_61851907_61852772_61852926_61859295
20916	chr15	+	5258	44	FSM	ENSMUSG00000022558.17	ENSMUST00000096385.11	5268	44	10	0	0	0	multi-exon	FALSE	canonical	3	62	junction_5	19.8740490552834	108	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGTGACATTGTATCAAT	NA	False	NA	NA	False	NA	NA	NA	76264722	76337238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76264777_76274230_76274328_76276580_76276660_76278002_76278149_76285775_76285908_76286332_76286496_76286682_76286782_76292091_76292244_76292587_76292729_76293082_76293176_76297101_76297181_76298418_76298533_76305339_76305414_76307915_76308036_76311308_76311417_76311711_76311857_76312101_76312143_76312443_76312586_76312848_76312902_76313352_76313461_76313987_76314108_76314376_76314500_76316348_76316496_76316571_76316599_76317473_76317597_76317737_76317818_76318026_76318142_76318262_76318359_76318882_76318988_76319969_76320106_76320204_76320318_76321437_76321591_76327449_76327605_76330715_76330882_76331368_76331566_76334285_76334424_76334838_76334954_76335261_76335409_76335546_76335736_76336004_76336161_76336243_76336379_76336446_76336550_76336627_76336694_76337025
20918	chr7	+	3212	5	NIC	ENSMUSG00000030649.19	novel	3103	6	NA	NA	4	-7	intron_retention	FALSE	canonical	3	304	junction_1	121.702506136891	1317	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATAACTGAATAACTTGGT	7830	False	NA	NA	False	NA	NA	NA	101545627	101551045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101545658_101546939_101547279_101547760_101547821_101548106_101548245_101548400
20919	chr16	+	3074	18	FSM	ENSMUSG00000043065.13	ENSMUST00000050897.7	4627	18	293	1260	0	94	multi-exon	FALSE	canonical	0	0	junction_1	35.5942143737688	372	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGATACTTTTTTTTTCTA	6401	False	NA	NA	False	NA	NA	NA	44167776	44207600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
20920	chr8	-	2601	6	NIC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	30	-6	intron_retention	FALSE	canonical	3	2367	junction_4	177.298166939199	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTATGTCTGTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	108315060	108307018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
20921	chr6	+	2478	15	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	542.297592260401	18	30	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTCTATCCCTTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	71808317	71852242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300_71851699_71851927
20922	chr7	-	1701	4	Antisense	novelGene_ENSMUSG00000108878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATCCAGTCCCTAAGCGT	NA	False	NA	NA	False	NA	NA	NA	83548384	83541388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83541682_83544735_83544969_83546955_83547188_83547441
20923	chr2	-	3155	1	NIC	ENSMUSG00000035399.13	novel	1620	4	NA	NA	2681	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCAGAGGTATTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	163250904	163247749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_163247700_163250900
20924	chr2	+	2408	17	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	13	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	770.590347963819	1	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTCCCAGTGTTGATGG	NA	False	NA	NA	False	NA	NA	NA	157120991	157167967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131451_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144367_157152114_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
20927	chr4	-	2077	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	24	7	3	-7	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	4570	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCCTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137085007	137047013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
20928	chr17	+	3156	7	NIC	ENSMUSG00000025737.6	novel	3139	8	NA	NA	106	3	intron_retention	FALSE	canonical	3	89	junction_2	16.2343942158479	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	26042728	26047698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046968_26047127_26047313_26047388
20929	chr11	-	1742	8	NIC	ENSMUSG00000020538.16	novel	4063	18	NA	NA	280	519	intron_retention	FALSE	canonical	3	394	junction_7	17.6854604182103	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATTATTTATAACTTCAG	5975	False	NA	NA	False	NA	NA	NA	60094034	60090436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60090978_60091251_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924
20930	chr4	-	4513	17	ISM	ENSMUSG00000041936.19	ENSMUST00000105574.9	7193	35	12200	8	29	-4	intron_retention	FALSE	canonical	3	246	junction_15	71.4762854029223	6	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTAAAATAGGGACTGTGT	NA	False	NA	NA	False	NA	NA	NA	156258158	156249754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459
20931	chr2	-	2497	17	NNC	ENSMUSG00000027620.17	novel	2810	17	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	840.592415725362	1	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCCACAAGAAAATTTTCG	NA	False	NA	NA	False	NA	NA	NA	156022102	155989172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009509_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021164_156022049
20932	chr4	+	4020	7	Antisense	novelGene_ENSMUSG00000028896.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	113	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCCCCGAGCATGCGCT	NA	False	NA	NA	False	NA	NA	NA	132059239	132073006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_132061573_132061797_132061915_132062054_132063124_132065040_132065224_132065363_132065550_132067235_132067317_132072955
20933	chr15	+	1722	11	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	386.774145981864	47	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	NA	False	NA	NA	NA	85220448	85347413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322343_85347121
20934	chr6	-	1717	9	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	163	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1755.11680522978	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAACTCTGGATTTGAAT	8648	False	NA	NA	False	NA	NA	NA	145021747	144944884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945256_144945498_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144993017_144993090_145021614
20935	chr4	+	2812	12	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-73	-2	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_7	75.9955414090168	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603827	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99650107
20936	chr9	-	3158	18	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	197.290031175891	8	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAATTTGTTTTTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	31043085	31000702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31001328_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
20937	chr6	+	695	3	FSM	ENSMUSG00000029920.10	ENSMUST00000205118.3	600	3	-23	-72	-23	0	multi-exon	FALSE	canonical	3	133	junction_2	73	391	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGCAGAGCATTATGGA	1762	False	NA	NA	False	NA	NA	NA	65019627	65021187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_65019715_65020189_65020430_65020819
20938	chr13	+	2602	20	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-28	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	435.411519296095	7	51	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835638	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49887198
20939	chr17	-	2241	11	NNC	ENSMUSG00000079553.12	novel	2357	11	NA	NA	12	2	intron_retention	FALSE	non_canonical	0	0	junction_10	192.548071919716	12	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	9735	False	NA	NA	False	NA	NA	NA	34109593	34094639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105866_34109508
20940	chr9	-	2548	11	NNC	ENSMUSG00000032096.17	novel	4072	10	NA	NA	-15	-576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	320.642495624021	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTACTGGACTCTAAC	NA	False	NA	NA	False	NA	NA	NA	44679110	44653436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44654304_44655219_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
20941	chr4	-	1871	13	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	-13	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	551.592442136603	44	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	8795	False	NA	NA	False	NA	NA	NA	129436519	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411289_129411833_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
20942	chr3	+	1916	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	691.544468186457	1	63	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3858	False	NA	NA	False	NA	NA	NA	88204476	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219126_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
20943	chr19	+	2399	14	NIC	ENSMUSG00000024735.14	novel	2134	16	NA	NA	17	0	intron_retention	FALSE	canonical	3	125	junction_5	10.1182359245499	920	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	10872611	10882896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
20945	chr6	-	4182	18	FSM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	239	3	-16	-3	multi-exon	FALSE	canonical	3	33	junction_9	6.4238957016875	84	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATCTGAACATCTTCAG	NA	False	NA	NA	False	NA	NA	NA	97125904	97086987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97125220_97125792
20947	chr16	+	2533	22	NNC	ENSMUSG00000022773.20	novel	1082	6	NA	NA	8727	24197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	272	7	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGATCGACGCACTGGATC	7849	False	NA	NA	False	NA	NA	NA	16904426	16929106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_16905081_16906611_16906730_16907007_16907153_16907296_16907358_16907449_16907517_16907964_16908023_16909038_16909154_16909292_16909515_16909718_16909754_16910078_16910169_16910548_16910656_16910871_16910950_16912745_16912908_16913868_16913947_16914570_16914658_16915218_16915311_16918118_16918172_16921439_16921491_16923855_16923920_16925042_16925091_16927510_16927556_16929003
20948	chr9	+	1275	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-7	-148	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6160.20075630857	5	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTGTGTGACTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	64080667	64085800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082538_64082924_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
20949	chr2	+	1721	4	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	-3	intron_retention	FALSE	canonical	3	2580	junction_3	1865.38271318962	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAATGGGCTTGGCTGCTT	5796	False	NA	NA	False	NA	NA	NA	32851725	32854052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32852685_32852996_32853596_32853752_32853866_32854002
20950	chr2	+	3657	13	NIC	ENSMUSG00000026648.19	novel	2469	14	NA	NA	3	1262	intron_retention	FALSE	canonical	0	0	junction_4	9.10547759440559	101	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTTGAGTATGATGACAT	1039	False	NA	NA	False	NA	NA	NA	3425204	3456391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
20951	chr15	-	2618	14	NIC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	4	-12	intron_retention	FALSE	canonical	3	559	junction_9	45.1405431851817	169	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACAGTCTTGACCCTGGC	NA	False	NA	NA	False	NA	NA	NA	76361473	76337200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338559_76338651_76338785_76338873_76338944_76339017_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
20952	chr3	-	2352	8	Antisense	novelGene_ENSMUSG00000039756.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGCCAGCGCGGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	122078910	122068047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_122068126_122068844_122070002_122070057_122070460_122072394_122072532_122074374_122074472_122075976_122076140_122078039_122078151_122078703
20954	chr9	+	3163	26	NNC	ENSMUSG00000032295.16	novel	3820	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	55.5197406333999	2	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAATGGTGCCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	57038051	57049491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57038174_57038442_57038566_57038815_57038905_57040834_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
20955	chr17	+	3759	28	ISM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	829	-5	499	5	intron_retention	FALSE	canonical	0	0	junction_11	423.570229559395	13	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCTCTTGTCTGTGTGGTG	485	False	NA	NA	False	NA	NA	NA	35220791	35235303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569
20956	chr2	+	2673	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	-7	intron_retention	FALSE	non_canonical	0	0	junction_9	114.71473782553	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAATAGTTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	130266273	130285647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281585_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
20957	chr2	-	2420	4	ISM	ENSMUSG00000074643.13	ENSMUST00000142975.8	3466	15	35420	0	84	0	3prime_fragment	FALSE	canonical	3	312	junction_1	9.80929264637477	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	155918388	155913764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156
20958	chr11	-	2639	10	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	142.650916403006	298	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATTGCCGATATTTCTT	974	False	NA	NA	False	NA	NA	NA	79145498	79130211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
20959	chr9	+	1658	13	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	1708.58941983016	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108765777	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108765938_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
20960	chr4	+	2829	23	NNC	ENSMUSG00000028330.9	novel	3010	23	NA	NA	134	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	82.5528756175536	60	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	-7	True	NA	NA	False	NA	NA	NA	46138746	46172403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156808_46157853_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
20961	chrX	-	2576	15	NNC	ENSMUSG00000031402.13	novel	2525	12	NA	NA	8094	13671	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	105	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGACTCCTATGGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	74153360	74139667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74139728_74140433_74140520_74140898_74140974_74142065_74142171_74142368_74142551_74143632_74143692_74144037_74144162_74144591_74144725_74146025_74146172_74147945_74148066_74149258_74149377_74149881_74149986_74150775_74150852_74151782_74151909_74152298
20962	chr5	-	2914	7	Antisense	novelGene_ENSMUSG00000029110.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTTCTCCCGTGCTCTA	3166	False	NA	NA	False	NA	NA	NA	34510772	34493713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_34493828_34499864_34500025_34504121_34504245_34506006_34506078_34507219_34507432_34508145_34508178_34508570
20963	chr1	+	2539	12	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	3	-246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	199.286827636504	1	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177562	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184143_167184189_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
20965	chr4	-	2037	3	NNC	ENSMUSG00000044018.4	novel	2114	2	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	640.5	2493	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	-16	True	NA	NA	False	NA	NA	NA	49521078	49512595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_49513845_49513906_49514578_49520961
20966	chr10	+	4092	19	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-16505	0	intron_retention	FALSE	non_canonical	0	0	junction_13	143.536376427806	1	121	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	NA	NA	NA	25258051	25399411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25258107_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377475_25377524_25377717_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388874_25388980_25398194
20967	chr17	-	3578	14	NNC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	-4	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	272.850241777188	1	143	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACGAAGACATTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	32540137	32522655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32523668_32523764_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531345_32533084_32533116_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536310_32537722_32537784_32540054
20968	chr7	-	3172	19	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-2543	-3	intron_retention	FALSE	non_canonical	0	0	junction_9	49.8558725196075	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140691130	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686813_140687075_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140690288_140690426_140690543_140690670_140691067
20969	chr3	-	3371	6	NIC	ENSMUSG00000027708.15	novel	4434	7	NA	NA	37	506	combination_of_known_junctions	FALSE	canonical	1	4	junction_5	83.7104533496265	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTAAATTTGCCATGACTA	NA	False	NA	NA	False	NA	NA	NA	35986446	35947148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975119_35975337_35986341
20970	chr5	+	2274	9	NIC	ENSMUSG00000029131.15	novel	2918	10	NA	NA	0	-22	combination_of_known_splicesites	FALSE	canonical	1	10	junction_8	650.499219350031	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATACAGTTTTATACAT	4595	False	NA	NA	False	NA	NA	NA	29940986	29991454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29990028
20971	chr4	+	811	5	Antisense	novelGene_ENSMUSG00000028495.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGCGTCACGAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	86772898	86775584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_86773189_86774099_86774250_86774381_86774593_86774963_86775097_86775557
20973	chr7	-	2556	7	NIC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	11	-3	intron_retention	FALSE	canonical	3	1616	junction_2	202.859078070358	3	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAAAACTGTCTTGATGTG	NA	False	NA	NA	False	NA	NA	NA	79765069	79744600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79744952_79745368_79745884_79747551_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
20974	chr11	-	2126	13	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	2240	junction_1	248.639785745475	14	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAGAAAAAGAATAAA	5912	False	NA	NA	False	NA	NA	NA	100510464	100473677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
20975	chr5	+	1499	6	NNC	ENSMUSG00000107385.4	novel	2020	7	NA	NA	-28	355	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.36867333123626	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAGATCTGCCGGTTTC	7998	False	NA	NA	False	NA	NA	NA	67621211	67635330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_67621362_67623669_67623772_67624135_67624364_67630869_67631405_67634249_67634626_67635222
20976	chr1	+	2759	15	NNC	ENSMUSG00000033793.13	novel	2049	14	NA	NA	-6	680	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	189.436920738212	1428	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATTTTATTTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	5153340	5233432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_5153502_5154639_5154787_5158782_5158851_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
20977	chr2	+	2856	10	NIC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	60	-1383	intron_retention	FALSE	canonical	3	1351	junction_5	103.602635935769	12	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACACAAGTGGCTTATTT	721	False	NA	NA	False	NA	NA	NA	26279427	26285751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26281191_26281877_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
20978	chr9	-	5137	38	NNC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	51	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	360.79842877833	1	295	20	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCCAGCTAGTGATTGAG	NA	False	NA	NA	False	NA	NA	NA	20864090	20818507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823598_20823867_20823953_20825192_20825379_20827017_20827237_20828592_20828767_20829197_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20835002_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848484_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20863987
20979	chr9	-	2913	18	ISM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	23156	5	-5159	-5	3prime_fragment	FALSE	canonical	3	531	junction_11	46.1180972366984	16	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAATTTGTTTTTCTTGCT	9945	False	NA	NA	False	NA	NA	NA	31019993	31000702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866
20980	chr15	-	1608	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	129	6	2	-6	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	27	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTTTGTTTCTGGATA	160	False	NA	NA	False	NA	NA	NA	98832317	98829311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
20981	chr1	+	2397	20	NIC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	39	1	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	155.343850574644	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	361	False	NA	NA	False	NA	NA	NA	72346624	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_72346727_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
20982	chr1	+	2904	9	NNC	ENSMUSG00000026174.10	novel	3268	8	NA	NA	311	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.195668751818	23	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTGTTTTGTTTT	1173	False	NA	NA	False	NA	NA	NA	74545529	74569991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844_74569195_74569235
20984	chr14	+	1654	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1082.36623499935	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6575	False	NA	NA	False	NA	NA	NA	76741953	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744873_76744938
20985	chr14	+	2180	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	43	1177	43	-8	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	1	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTAAAATGTGTGAGTG	8934	False	NA	NA	False	NA	NA	NA	55777765	55786297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
20986	chr2	+	2294	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	64	1	64	-1	multi-exon	FALSE	canonical	3	60	junction_1	194.922420465169	984	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAGTCTTTCAGTGGAC	NA	False	NA	NA	False	NA	NA	NA	144112924	144122435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121047_144121400
20987	chr16	-	3216	21	NNC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	20	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.131638530263	3	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTTTGTGGTTTTAGTG	1967	False	NA	NA	False	NA	NA	NA	15964695	15707089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15707403_15707446_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
20988	chr5	+	4267	5	ISM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	42899	19	5	-5	intron_retention	FALSE	canonical	3	470	junction_1	23.7118114027588	5	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTTTCCTTGTCTAAG	NA	False	NA	NA	False	NA	NA	NA	34774115	34789633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758
20989	chr18	+	2142	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	423.654310973713	2204	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	68433430	68454978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447134_68449709_68449884_68451064_68451183_68452188_68452291_68453296_68453331_68454388
20991	chr16	+	2562	11	FSM	ENSMUSG00000022721.20	ENSMUST00000127239.8	2805	11	236	7	32	-3	multi-exon	FALSE	canonical	3	250	junction_9	16.6400120192264	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACATTTCTGTGGTGAA	301	False	NA	NA	False	NA	NA	NA	18066778	18071359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
20992	chrX	-	2489	4	ISM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	intron_retention	FALSE	canonical	3	15566	junction_3	654.174798250947	122	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960
20993	chr17	+	3512	26	NIC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	-1	0	intron_retention	FALSE	canonical	3	152	junction_9	16.3988292265027	2	60	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCATGGCTGTTCAGGAC	NA	False	NA	NA	False	NA	NA	NA	66430564	66458384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
20994	chrX	-	3616	6	NNC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	285	-167	intron_retention	FALSE	canonical	2	2	junction_5	104.519089165568	149	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTTGTGTGAATAT	NA	False	NA	NA	False	NA	NA	NA	156381354	156349109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381306
20995	chr17	-	3535	4	FSM	ENSMUSG00000094441.3	ENSMUST00000008830.10	3544	4	6	3	6	-3	multi-exon	FALSE	canonical	3	111	junction_3	10.077477638554	112	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTTTTTTGTTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33474113	33458694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33461925_33462686_33462745_33462981_33463109_33473993
20996	chr18	+	3101	19	Genic_Genomic	ENSMUSG00000099196.3	novel	60	1	NA	NA	-11395	24040	multi-exon	FALSE	non_canonical	0	0	junction_1	0.458122847290851	3	38	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAAGCCCCTCCGCCAG	NA	False	NA	NA	False	NA	NA	NA	56659815	56695310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_56660080_56661106_56661234_56661348_56661424_56664560_56664638_56664783_56664880_56665051_56665168_56665557_56665667_56667261_56667351_56670278_56671403_56671461_56671640_56675335_56675395_56678036_56678114_56679974_56680016_56681513_56681651_56683366_56683490_56684229_56684313_56692293_56692359_56693846_56693897_56695099
20997	chr18	+	2692	21	NNC	ENSMUSG00000024271.9	novel	3466	22	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	303.629692223933	1	70	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	NA	False	NA	NA	NA	24737041	24771869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747478_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755284_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764693_24767395_24767530_24767957_24768066_24771450
20998	chr11	+	3088	20	FSM	ENSMUSG00000017686.18	ENSMUST00000055056.16	4260	20	77	1095	13	0	multi-exon	FALSE	canonical	3	75	junction_18	152.933077899418	314	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGGTTTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	80099957	80157638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80148339_80148463_80156567
21000	chr15	-	2224	12	ISM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	14	20990	14	1112	5prime_fragment	FALSE	canonical	3	283	junction_9	24.9482108204275	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTGAAATCAGATCTGCC	NA	False	NA	NA	False	NA	NA	NA	57998464	57978431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
21001	chr2	-	1947	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	11	5	11	3	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	2305	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAATGACTCATTGTTTCA	8361	False	NA	NA	False	NA	NA	NA	155434719	155405105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
21002	chr8	+	3115	24	NNC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	0	-710	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	55.6350517138795	2	68	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTACTGAGACTCAGG	NA	False	NA	NA	False	NA	NA	NA	85809943	85824201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822164_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
21003	chr13	+	2951	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2804	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	109.19923178403	2	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGGAGTGTTTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	35922491	36058045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36042058_36042232_36047181_36047393_36055560_36055705_36056494
21004	chr7	-	1865	10	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-15	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	666.687666335927	2	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGATCTCTATTGGTGTG	8850	False	NA	NA	False	NA	NA	NA	141941609	141929658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930232_141930316_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
21005	chr8	-	1641	5	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1757.75174228331	11	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	43760039	43748103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43748893_43749045_43749574_43753664_43753743_43757512_43757597_43759877
21006	chrX	+	2296	1	NIC	ENSMUSG00000079435.10	novel	483	5	NA	NA	-3	-15	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	40	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTTGACCTTTCAACCC	NA	False	NA	NA	False	NA	NA	NA	133486434	133488730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_133486400_133488700
21007	chrX	+	198	1	Genic_Genomic	ENSMUSG00000079435.10	novel	NA	NA	NA	NA	901	117	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTCAATACATTCCAGA	NA	False	NA	0	True	NA	NA	NA	133488730	133488928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_133488700_133488900
21008	chr3	+	2627	8	NNC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	3083	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	78.1983349684425	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTTTGTATGCCTTCA	NA	False	NA	NA	False	NA	NA	NA	116317059	116343625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116317077_116326903_116327086_116328393_116328405_116333339_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
21009	chr14	+	2592	12	NNC	ENSMUSG00000022070.8	novel	3834	13	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	91.9262190676094	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCGTTTTCCTTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	99283828	99311975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310068_99311081
21010	chr11	-	3671	23	NNC	ENSMUSG00000017210.15	novel	3410	26	NA	NA	-119	-1	intron_retention	FALSE	canonical	0	0	junction_5	38.1751076354109	5	80	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTGTGTGGGGACAGT	NA	False	NA	NA	False	NA	NA	NA	98619779	98595417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600403_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610
21011	chr11	+	3894	30	Antisense	novelGene_ENSMUSG00000002812.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACGGGCAGGGAGGACGC	NA	False	NA	66	True	NA	NA	NA	60605039	60618029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_60605277_60605422_60605475_60605849_60605965_60606111_60606219_60606288_60606420_60606495_60606550_60606625_60606789_60606923_60607155_60607224_60607373_60607482_60607672_60607964_60608157_60608237_60608337_60608942_60609120_60609407_60609502_60609682_60609746_60609849_60609938_60610520_60610699_60610831_60611044_60611185_60611319_60611462_60611611_60611903_60611986_60612269_60612435_60612509_60612682_60613118_60613227_60613411_60613575_60613826_60613916_60614193_60614271_60615615_60615692_60615986_60616082_60617973
21012	chr18	-	2084	12	FSM	ENSMUSG00000024644.18	ENSMUST00000025546.17	2124	12	36	4	36	0	multi-exon	FALSE	canonical	3	418	junction_11	64.2627612178223	1069	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCCGTGGTCTGACT	NA	False	NA	NA	False	NA	NA	NA	84703791	84685593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962_84700053_84703727
21014	chr4	-	2131	13	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	117.103942432923	11	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGCTTCTTTGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	149251122	149234450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245333_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
21015	chr8	+	3814	14	NNC	ENSMUSG00000047866.21	novel	2859	15	NA	NA	-31	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	89.8458904105727	2	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTCTGGTCTCCAGTGGG	NA	False	NA	NA	False	NA	NA	NA	87350702	87443261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_87351045_87358013_87358249_87359369_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87439939_87440148_87440530_87440722_87442877
21019	chr9	+	3493	12	NIC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	26	-9	intron_retention	FALSE	canonical	3	822	junction_8	76.0911806229542	1	131	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAATTGCCTCTTAGGTTC	5538	False	NA	NA	False	NA	NA	NA	35122476	35128301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
21020	chr14	-	2486	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-30	732	-10	0	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	1	97	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	NA	False	NA	NA	NA	36857239	36842780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
21021	chr1	-	3190	22	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	149	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCCCTGGGAGCAGAGG	3318	False	NA	NA	False	NA	NA	NA	87647344	87604011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87604088_87609206_87609290_87609406_87609479_87611462_87611589_87619346_87619449_87623049_87623157_87625069_87625266_87625831_87625952_87626748_87626845_87627359_87627500_87628880_87628992_87629137_87629225_87630838_87630921_87633654_87633745_87635816_87635940_87637347_87637421_87638784_87638874_87639751_87639898_87640907_87641005_87642757_87643035_87645413_87646007_87647040
21025	chr19	+	5313	13	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-247	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_7	18.9839113169254	22	53	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	25214091	25411860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_25214357_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
21026	chr15	-	3476	10	NNC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	13	230	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	104.452836542281	2	89	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTTTTAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	12824684	12808501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_12809710_12809909_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
21027	chrX	-	2657	2	FSM	ENSMUSG00000015290.16	ENSMUST00000126191.2	614	2	-18	-2025	-18	0	multi-exon	FALSE	canonical	3	1799	junction_1	0	43	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGAATCCTGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	73412137	73409323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73411865_73412021
21028	chr10	-	2364	9	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	888.5098128327	2	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGTTGTGTGTTCTC	-8	True	NA	NA	False	NA	NA	NA	128401850	128393638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395101_128395227_128395306_128395402_128395950_128396164_128398806_128399005_128399092_128399199_128399445_128399575_128401608
21029	chr15	+	1500	5	NNC	ENSMUSG00000043091.10	novel	1982	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4835.66439980071	2652	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	98928201	98935994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915_98935482_98935536
21030	chr17	-	3566	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	33	19	21	-17	multi-exon	FALSE	canonical	3	301	junction_5	41.6619997386374	3	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTTTGTTGTATACTAG	3784	False	NA	NA	False	NA	NA	NA	80203519	80155837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
21031	chr3	+	3291	3	NIC	ENSMUSG00000001418.14	novel	861	4	NA	NA	67	45	intron_retention	FALSE	canonical	3	949	junction_1	29	3	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGATTTCCAGTCTCTCTT	4121	False	NA	NA	False	NA	NA	NA	88232455	88235933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88233620_88233717_88235421_88235509
21032	chr1	-	3031	11	FSM	ENSMUSG00000026034.18	ENSMUST00000156931.8	4865	11	27	1807	27	4	multi-exon	FALSE	canonical	3	126	junction_10	34.9097407609968	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTATAGCTTGGTGTACG	NA	False	NA	NA	False	NA	NA	NA	58463198	58451154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58460468_58460932_58461094_58463078
21034	chr3	-	1878	13	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	389.761964394794	206	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCTGGCCCTGATCCTA	NA	False	NA	NA	False	NA	NA	NA	157630700	157599888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157609356_157609438_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
21035	chr11	-	3901	8	FSM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	0	25	0	0	multi-exon	FALSE	canonical	3	286	junction_4	11.5440593433354	393	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAGTAACGTGTTTTTC	7761	False	NA	NA	False	NA	NA	NA	20282713	20252204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20254501_20256465_20256601_20257891_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
21036	chrX	+	1718	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	107	0	44	0	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	3	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	NA	NA	NA	105230812	105247305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
21037	chr18	+	2441	12	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26618	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	380.384103395111	1	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAACTTTTCTAATTAAAG	6467	False	NA	-55	True	NA	NA	NA	77126285	77240810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223652_77240249
21038	chr7	-	2900	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	41	19	37	-19	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTATTTCTGGAACATGG	NA	False	NA	NA	False	NA	NA	NA	139616138	139575927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
21039	chr15	-	2533	16	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	3	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2295.78636830366	1	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTCCTTAAACAGTAGAT	380	False	NA	NA	False	NA	NA	NA	36609214	36595920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596896_36597207_36597339_36597700_36597786_36598249_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557_36608779_36609006
21041	chr6	+	3046	12	NNC	ENSMUSG00000107659.2	novel	549	2	NA	NA	32	14553	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	121	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCCGGGGATGGGCCACC	NA	False	NA	NA	False	NA	NA	NA	88480618	88495812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88482272_88483122_88483201_88483716_88483921_88484156_88484354_88485545_88485704_88489082_88489240_88489479_88489588_88491294_88491423_88492321_88492405_88492485_88492554_88495353_88495421_88495667
21042	chr11	+	5026	19	FSM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	8	-8	8	8	multi-exon	TRUE	canonical	3	12	junction_8	17.3190824607989	134	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTTGTTCTTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	32483312	32574595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_32483560_32505123_32505289_32524498_32524548_32527623_32527774_32537312_32537386_32538755_32538951_32539409_32539492_32546614_32546750_32548438_32548985_32550740_32550872_32553666_32553791_32554120_32554301_32560632_32560726_32562670_32562801_32563461_32563587_32564524_32564714_32565780_32565907_32567848_32567963_32572423
21043	chr7	-	3681	15	FSM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	14	5	-13	-5	multi-exon	FALSE	canonical	3	153	junction_2	15.7941154115276	215	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAAAACAGGGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	88987981	88788926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_88791179_88792988_88793057_88793864_88793964_88797177_88797255_88800620_88800685_88803235_88803404_88805634_88805705_88808076_88808224_88814332_88814375_88845320_88845368_88893128_88893195_88929174_88929209_88953888_88953982_88956344_88956473_88987655
21044	chrX	+	2387	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-53	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1373.90947288001	1	94	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTCTGTGCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473287	100492194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488335_100488397_100488900_100488941_100489724_100489835_100491199
21045	chr13	+	4020	19	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	42	-8	intron_retention	FALSE	canonical	3	35	junction_16	53.2687108493866	18	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCATACCGTCTACTG	NA	False	NA	NA	False	NA	NA	NA	35059528	35090039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35086659_35087169_35087257_35088026_35088073_35089865
21046	chr14	+	2049	13	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-14	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	586.88321642574	16	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAGAAAAAAATTAATCCT	NA	False	NA	NA	False	NA	NA	NA	30271123	30295565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292298_30293057_30293203_30294164_30294288_30295293
21048	chr13	-	2794	3	Antisense	novelGene_ENSMUSG00000113081.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1460	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCACCCGGAAGAACCCT	NA	False	NA	NA	False	NA	NA	NA	62423472	62411408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62411509_62420578_62420704_62420903
21049	chr9	-	3399	3	Intergenic	novelGene_985	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGGTTTCCATGTCGTTA	3511	False	NA	NA	False	NA	NA	NA	5552126	5548586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_5548692_5548773_5549801_5549859
21050	chr7	-	3846	18	NNC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	7593	-3	intron_retention	FALSE	canonical	3	16	junction_15	145.346739696783	12	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTTTCGGCCTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	27025445	27004569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27022362_27022566_27022696_27023511_27023632_27023726_27023845_27024443_27024687_27025102
21051	chr11	-	2041	15	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	250.779407496887	30	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	35725337	35699207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35711981_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
21052	chrX	-	3619	10	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	-12	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	73.6146120760757	21	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTTACGTTTATCATCT	NA	False	NA	NA	False	NA	NA	NA	156381659	156330833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333188_156337955_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
21054	chr3	-	2552	18	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-18	-9	intron_retention	FALSE	canonical	0	0	junction_2	186.915594444035	1	34	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGCCAAGGCTGTGCC	NA	False	NA	NA	False	NA	NA	NA	95662213	95647296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648339_95648428_95648638_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658297_95658817_95658943_95660318_95660443_95661683_95661828_95662069
21055	chr5	+	2301	12	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	415.229200871276	8	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCACCTGTGTGCTCCTG	NA	False	NA	NA	False	NA	NA	NA	111478640	111536221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368_111535246_111535689
21057	chr3	+	1901	15	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	173	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	255.285234630615	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTGTTGTGAAGGTTTC	NA	False	NA	NA	False	NA	NA	NA	69629760	69656376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69630053_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
21058	chr10	+	2423	12	NNC	ENSMUSG00000019970.16	novel	2602	12	NA	NA	118	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	323.552261799701	1	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21854688	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872523_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
21059	chr4	-	2137	14	NNC	ENSMUSG00000028693.16	novel	2118	14	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	438.381315198074	2	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCCTTGTTCTGGAAT	NA	False	NA	NA	False	NA	NA	NA	116484690	116458249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471632_116476066_116476178_116479963_116480012_116484528
21060	chr9	+	3217	1	Antisense	novelGene_ENSMUSG00000032494.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	88	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTCTCTCTCTCTCCCTC	2053	False	NA	NA	False	NA	NA	NA	110768749	110771966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_110768700_110772000
21061	chr18	-	2505	14	NNC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	-25	-1	intron_retention	FALSE	canonical	3	33	junction_13	94.3034884243106	25	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGAATGCTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	12996462	12888385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996405
21062	chr5	+	1699	6	ISM	ENSMUSG00000025538.16	ENSMUST00000171300.8	2264	9	12	4666	12	-3414	5prime_fragment	FALSE	canonical	3	472	junction_3	14.4692777981487	28	62	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCAGCAGATCTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	129875838	129888225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080
21066	chr9	+	3523	8	NNC	ENSMUSG00000032333.7	novel	2236	8	NA	NA	44	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	155.054565773946	92	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGGAATGGAGAAGTGCA	NA	False	NA	NA	False	NA	NA	NA	58160518	58169795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_58161029_58161223_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
21067	chr7	-	2464	14	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-362	-2	intron_retention	FALSE	canonical	0	0	junction_3	602.573219789181	3	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGTCTGGTCTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	143128708	143111445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113434_143115591_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143124700_143124816_143125220_143125334_143128249
21068	chr8	-	3599	4	NNC	ENSMUSG00000031984.9	novel	2340	7	NA	NA	20817	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	711.611473269571	1	141	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACAAAACATGT	925	False	NA	NA	False	NA	NA	NA	125568887	125563698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125566706_125567186_125567246_125568039_125568111_125568425
21069	chr2	-	2372	2	Genic_Genomic	ENSMUSG00000083287.5	novel	684	1	NA	NA	-54	1755	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53586870	53584377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_53586706_53586826
21070	chr11	+	3067	9	Antisense	novelGene_ENSMUSG00000078789.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAATTGGCCTGAGCCCC	5484	False	NA	NA	False	NA	NA	NA	75068599	75075971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75069213_75069749_75069856_75069996_75070139_75070550_75070628_75071383_75071488_75071613_75071764_75072111_75072185_75074024_75074152_75074296
21071	chr17	-	2608	18	NNC	ENSMUSG00000024039.16	novel	6226	17	NA	NA	-5824	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	107.741584984388	738	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGTCGTGTCGACCTT	8996	False	NA	NA	False	NA	NA	NA	31862036	31831617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31861583_31861683_31861886
21073	chr9	+	2169	10	NIC	ENSMUSG00000001774.9	novel	5789	11	NA	NA	75	1988	combination_of_known_junctions	FALSE	canonical	2	42	junction_4	285.699142455836	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTCATGTGTTT	8440	False	NA	NA	False	NA	NA	NA	18203495	18225297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
21074	chr10	-	2714	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	57	959	-14	-959	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	1	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845584	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
21076	chr2	+	2799	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	-37	-454	-32	454	multi-exon	FALSE	canonical	3	50	junction_1	26	197	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGTTTATACTTTACAG	3405	False	NA	NA	False	NA	NA	NA	91541229	91552344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91541597_91542424_91543211_91550698
21077	chr15	+	1519	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	463	0	33	0	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	9	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCATCTGGTTCATA	NA	False	NA	NA	False	NA	NA	NA	98928234	98935991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
21078	chr9	-	2678	25	NNC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	-8	-1397	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	249.292328262535	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCGCTCTGAACGGTCAG	8320	False	NA	NA	False	NA	NA	NA	95393920	95344854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366461_95366528_95367613_95367719_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
21079	chr6	+	3706	3	ISM	ENSMUSG00000046679.17	ENSMUST00000050497.14	2534	10	0	21612	0	2955	intron_retention	FALSE	canonical	3	15	junction_1	10	167	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAATTTTGATCAAGTCA	1453	False	NA	NA	False	NA	NA	NA	86415355	86425758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_86415470_86420708_86420958_86422415
21080	chr4	-	2654	4	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	4777	-1	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	38.7843038125248	47	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTTGTTGGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	144130210	144118244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907
21081	chr10	+	4406	23	NIC	ENSMUSG00000001150.8	novel	698	3	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	59.3729632099542	6	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGCCTTAGTTTTATGA	NA	False	NA	NA	False	NA	NA	NA	76316995	76351691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_76317346_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
21082	SIRV4002	+	3988	1	FSM	SIRV4002A	SIRV4002	3999	1	0	11	0	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	179	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	0	3988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4002_+_0_4000
21083	chr8	+	2957	24	NNC	ENSMUSG00000031930.12	novel	2098	8	NA	NA	4721	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	143.425853406319	204	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	108167768	108283845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108167871_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
21084	chr6	+	1742	6	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	948.65175907706	102	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	51447621	51460684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452319_51455417_51455581_51458703_51458799_51459459
21085	chr12	+	4337	10	FSM	ENSMUSG00000021254.10	ENSMUST00000221368.2	4355	10	17	1	0	-1	multi-exon	FALSE	canonical	3	40	junction_9	9.46077020329245	106	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGCTTATGATTGAGGT	NA	False	NA	NA	False	NA	NA	NA	86288648	86338557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86328222_86328318_86335573
21086	chr2	+	2123	12	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	4	-441	intron_retention	FALSE	canonical	3	800	junction_1	86.9995725267355	62	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164675730	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675771_164675949_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680870_164681070
21087	chr10	+	1874	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	33	9	0	-9	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	38229	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGAGATTCTATGGGCC	NA	False	NA	NA	False	NA	NA	NA	127919174	127926251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
21088	chr3	+	1842	15	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	378.448713264332	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCGTGCTGGATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32762658	32781119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32762752_32762913_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
21089	chr13	-	4033	8	NNC	ENSMUSG00000100235.9	novel	3886	7	NA	NA	-8	-91	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.22044030202207	1	72	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTTTTCCCCCCAA	NA	False	NA	NA	False	NA	NA	NA	67256621	67217553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67219593_67222149_67222246_67222896_67223024_67232637_67232868_67245856_67247112_67250106_67250200_67250761_67250846_67256512
21091	chr2	+	2393	9	NIC	ENSMUSG00000027091.15	novel	2111	10	NA	NA	-21	-5	intron_retention	FALSE	canonical	3	620	junction_5	88.8225055940216	1345	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAACTATGGGCCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	83474859	83494961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
21093	chr4	-	2137	6	Antisense	novelGene_ENSMUSG00000093975.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACCCGGCTGCTGACCGCT	NA	False	NA	NA	False	NA	NA	NA	147600487	147527876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147528000_147578835_147578925_147592040_147592096_147595207_147595277_147597816_147599559_147600428
21094	chr18	+	2736	21	NNC	ENSMUSG00000024231.16	novel	397	2	NA	NA	2359	13	at_least_one_novel_splicesite	FALSE	canonical	2	28	junction_1	206.258842234703	2	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAAGCATAATGCCT	2404	False	NA	NA	False	NA	NA	NA	3385669	3435398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3385723_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
21095	chr6	+	882	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	23	51	23	-51	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	3	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATACTCAGATCCACCTC	NA	False	NA	NA	False	NA	NA	NA	117893964	117901292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
21096	chr19	-	3776	26	FSM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	-104	4	-104	-4	multi-exon	FALSE	canonical	3	159	junction_20	17.3221707646588	164	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTAGTGTCTCGTTAG	6543	False	NA	NA	False	NA	NA	NA	45987031	45805806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
21097	chr6	+	2245	14	ISM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	297	2757	173	-2757	internal_fragment	FALSE	canonical	0	0	junction_6	221.137751922741	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCACTACCACCACTTTCC	5734	False	NA	NA	False	NA	NA	NA	125109168	125118959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236
21098	chr12	+	2089	6	NNC	ENSMUSG00000020570.16	novel	2019	5	NA	NA	-28	24	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_4	144.846953713221	71	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTACAATGAACTCTTCAT	8460	False	NA	NA	False	NA	NA	NA	33004217	33026927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_33004359_33015371_33015500_33017534_33017743_33019179_33019261_33024126_33024319_33025588
21099	chr19	-	1964	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	94	0	-26	0	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	3191	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8411	False	NA	NA	False	NA	NA	NA	43512950	43488190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
21100	chrX	-	3229	5	Intergenic	novelGene_3889	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	48	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAGAAACAAAATATGTAAC	NA	False	NA	NA	False	NA	NA	NA	20266361	20243117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_20243784_20247941_20248057_20263457_20263544_20263888_20265038_20265148
21101	chr7	+	3482	6	NIC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	5	1065	intron_retention	FALSE	canonical	3	5787	junction_3	287.226461176543	3	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGCCAACCAGGACCTT	NA	False	NA	NA	False	NA	NA	NA	142606535	142622736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_142606804_142616229_142616345_142618945_142619755_142619984_142620500_142620883_142620971_142621048
21102	chr17	-	1991	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	66	615	13	-615	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	102	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCCGGGCTCTGCATC	4839	False	NA	NA	False	NA	NA	NA	25179597	25162058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
21104	chr4	-	2710	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	-5	0	-5	0	multi-exon	FALSE	canonical	3	663	junction_8	52.1791784782653	7	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120427478	120397064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
21107	chr11	-	1978	6	FSM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	172	0	172	0	multi-exon	FALSE	canonical	3	51	junction_5	1338.58961597646	416	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120472034	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
21109	chr13	-	3293	10	FSM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	35	543	0	129	multi-exon	FALSE	canonical	3	47	junction_9	50.6888353061239	202	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTCTCCTGGTGGTTA	NA	False	NA	NA	False	NA	NA	NA	3943543	3932560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3943292
21110	chr16	+	2395	9	FSM	ENSMUSG00000022678.17	ENSMUST00000115795.9	2335	9	-50	-10	-3	0	multi-exon	FALSE	canonical	3	25	junction_8	91.5818452260054	553	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	NA	False	NA	NA	NA	13981158	14010792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009453
21111	chr10	+	3529	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	-20	119670	-20	-119670	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	200	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTATTTGGTGGCAC	NA	False	NA	NA	False	NA	NA	NA	83196064	83204699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
21112	chr1	+	4809	10	FSM	ENSMUSG00000039210.17	ENSMUST00000065573.14	4547	10	8	-270	-3	-7	multi-exon	FALSE	canonical	3	57	junction_8	10.9341463112378	124	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAAAGCCGTTGTTGGTG	NA	False	NA	NA	False	NA	NA	NA	186947715	187083894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_187036526_187036595_187048720_187048761_187054480_187054552_187073683_187073773_187080553
21113	chr1	-	3562	7	NIC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	0	-1142	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	127.053029173736	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTAGACCAGTAAGGCTTT	8667	False	NA	NA	False	NA	NA	NA	88205279	88191334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_88194381_88195669_88195749_88197042_88197136_88200450_88200488_88202763_88202820_88204940_88205008_88205095
21114	chr1	-	2789	11	FSM	ENSMUSG00000026277.15	ENSMUST00000151068.8	2821	11	35	-3	35	3	multi-exon	TRUE	canonical	3	161	junction_5	14.8354305633507	172	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTACAGAGCCTGGCCAG	NA	False	NA	NA	False	NA	NA	NA	93563316	93549620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
21115	chr9	-	2606	10	Antisense	novelGene_ENSMUSG00000037257.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	606	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTACCACTGCAGCGGGC	NA	False	NA	NA	False	NA	NA	NA	63549176	63509935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_63510054_63523967_63524157_63524267_63524366_63524788_63524878_63526427_63526513_63542585_63542668_63543663_63543765_63546320_63546425_63546872_63546923_63547486
21116	chr7	+	2759	3	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	33	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	476	7	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	304	False	NA	NA	False	NA	NA	NA	3339132	3347730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3339318_3341734_3341816_3345237
21117	chr8	-	1923	9	FSM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	-66	327	-66	-327	multi-exon	FALSE	canonical	3	1093	junction_6	113.438791314964	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGCAGCCAGTTCTAG	NA	False	NA	NA	False	NA	NA	NA	85573629	85568805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
21118	chr1	-	1777	16	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	361.623278503411	6	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	78465442	78401721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435311_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
21119	chr4	+	608	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	-2	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	4611	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	132035986	132038335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
21120	chrX	-	1121	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	90	-63	7	-1	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	1771	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGAGGCTTGAGTGCTT	676	False	NA	NA	False	NA	NA	NA	7765128	7760758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
21121	chr17	-	2461	10	NNC	ENSMUSG00000079553.12	novel	2357	11	NA	NA	6	-30	intron_retention	FALSE	non_canonical	0	0	junction_4	183.851389261363	994	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAACTATAAATAAAGAATAA	9729	False	NA	NA	False	NA	NA	NA	34109599	34094671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102074_34102853_34103562_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
21122	chr5	-	3326	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	118	8	-19	-4	multi-exon	FALSE	canonical	3	59	junction_4	27.6348964173923	222	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAAAGACTGTGTGCAAA	2299	False	NA	NA	False	NA	NA	NA	146158247	146146009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
21124	chr15	-	1978	13	NIC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_12	614.769666668384	73	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	75952747	75942038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75951218_75951339_75952698
21126	chr11	-	1611	10	NIC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	67	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	800.977843746529	32	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5268	False	NA	NA	False	NA	NA	NA	88846224	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_88815551_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
21127	chr4	+	1678	4	NIC	ENSMUSG00000042408.14	novel	3922	14	NA	NA	25	4664	intron_retention	FALSE	canonical	3	69	junction_3	3.09120616516523	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCCATTTCTCTCAATCC	2828	False	NA	NA	False	NA	NA	NA	126971259	126987009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126972340_126980767_126980835_126982121_126982348_126986704
21128	chr18	+	1596	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-105	-136	-105	136	mono-exon	FALSE	NA	NA	NA	NA	NA	2	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGCTTTAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	82356481	82358077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
21129	chr5	-	2353	13	NNC	ENSMUSG00000037936.16	novel	2521	13	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	228.580568703661	3	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	125418145	125354150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417975
21130	chr6	-	1546	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	-9	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4630.48644177909	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828021	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822211_87822452_87822540_87822637_87822776_87827885
21131	chr10	-	2972	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	43	-3	0	3	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	494	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	115198129	115176643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
21132	chr14	-	2825	15	Antisense	novelGene_ENSMUSG00000036023.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTTGCCCGGATGCGCG	2126	False	NA	NA	False	NA	NA	NA	51058752	51045381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_51045443_51047528_51047674_51047964_51048026_51049230_51049282_51052324_51053130_51053325_51053755_51054427_51054648_51054786_51054927_51056665_51056729_51056808_51056944_51057115_51057244_51057396_51057498_51057933_51058032_51058249_51058377_51058491
21133	chr2	+	2565	9	NNC	ENSMUSG00000027287.15	novel	2730	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	126.116451642916	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	NA	False	NA	NA	NA	120398194	120431736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756_120430403_120430517
21134	chr3	+	3006	3	NIC	ENSMUSG00000028156.13	novel	729	6	NA	NA	-1651	238	intron_retention	FALSE	canonical	3	1816	junction_1	203	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGACAACTAGATTTGT	NA	False	NA	NA	False	NA	NA	NA	138254964	138262213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_138256768_138259342_138259483_138261150
21135	chr13	-	6306	1	Antisense	novelGene_ENSMUSG00000078952.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAGCCCGGCATGGTGG	NA	False	NA	NA	False	NA	NA	NA	97626189	97619883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_97619900_97626200
21136	chr14	-	1791	14	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-20	-8	combination_of_known_junctions	FALSE	canonical	2	8	junction_13	249.473457339974	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCATGTGTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	30741021	30734398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30740885
21137	chr9	+	2821	21	NNC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	54.9	421	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACTGTACAGTGGTCAG	NA	False	NA	NA	False	NA	NA	NA	83716741	83754434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83751224_83751334_83754037
21138	chr5	+	4703	19	FSM	ENSMUSG00000029174.19	ENSMUST00000119756.6	4760	19	48	9	48	-4	multi-exon	FALSE	canonical	3	216	junction_12	24.8002513925928	171	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACCTGTGTCTTCGTGTT	8564	False	NA	NA	False	NA	NA	NA	64387789	64508820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_64387874_64414057_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594_64502769_64507072
21139	chr2	+	1990	5	FSM	ENSMUSG00000006418.18	ENSMUST00000127939.2	1985	5	-3	-2	-3	0	multi-exon	FALSE	canonical	3	9	junction_1	262.348051260153	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTAAGCTGCAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	167345362	167358086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167345522_167352795_167352903_167353131_167353247_167354436_167354545_167356585
21140	chrX	+	4816	17	NIC	ENSMUSG00000060681.16	novel	4976	16	NA	NA	14	-4	combination_of_known_junctions	TRUE	canonical	0	0	junction_8	37.5097903886439	83	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGTCTCTCTTTGTACA	NA	False	NA	NA	False	NA	NA	NA	55655148	55709586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55655181_55655322_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
21141	chr12	-	2995	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	433	-166	-67	166	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	450	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAACACAGTTATGCA	NA	False	NA	NA	False	NA	NA	NA	79238634	79220944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
21142	chrX	+	2542	9	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-8062	-1999	intron_retention	FALSE	non_canonical	0	0	junction_1	0	134	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGCCGCCAGCGACGT	NA	False	NA	NA	False	NA	NA	NA	72822571	72830699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72822780_72823073_72823132_72823218_72823732_72823820_72823921_72824178_72824637_72824757_72824818_72825281_72825401_72825615_72826325_72830382
21145	chr19	-	4685	22	NNC	ENSMUSG00000024908.16	novel	4952	24	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	137.853137535366	1	178	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATAAACTTCCTCGTGAG	NA	False	NA	NA	False	NA	NA	NA	3625716	3504935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568240_3568383_3571733_3571921_3576701_3576935_3625640
21146	chr12	-	2825	10	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	6	0	intron_retention	FALSE	canonical	0	0	junction_9	623.285520051744	1	107	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860094	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859990
21147	chrX	-	2330	14	NIC	ENSMUSG00000031389.18	novel	2367	15	NA	NA	-36	-25	intron_retention	FALSE	canonical	2	2	junction_7	529.052686943494	17	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCATGAAAAACTTCAGG	NA	False	NA	NA	False	NA	NA	NA	72965512	72943739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949826_72950034_72950198_72950274_72950483_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
21148	chr19	-	3004	25	NIC	ENSMUSG00000025159.9	novel	2810	26	NA	NA	0	-13	intron_retention	FALSE	canonical	3	6	junction_13	55.5110099189541	1	47	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTTCCCTGATGAGTA	NA	False	NA	NA	False	NA	NA	NA	41969578	41935243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41935543_41936128_41936186_41936654_41936756_41937893_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944036_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
21149	chr5	+	3105	6	FSM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	-17	0	-17	0	multi-exon	FALSE	canonical	3	97	junction_4	8.49470423263812	318	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGACATTTTTTTAAATGAA	6661	False	NA	NA	False	NA	NA	NA	30805259	30817073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720
21150	chr1	-	3237	9	NIC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	29	0	intron_retention	FALSE	canonical	3	704	junction_4	93.9666662971503	10	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTTTTTAAAATTTAATT	821	False	NA	NA	False	NA	NA	NA	175453172	175428943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_175429133_175431503_175431658_175433620_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
21151	chr2	-	5075	24	FSM	ENSMUSG00000068115.14	ENSMUST00000109896.8	5093	24	13	5	-9	-5	multi-exon	FALSE	canonical	3	41	junction_10	8.5081968705865	66	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGTTTTTTAAAGTTTT	7576	False	NA	NA	False	NA	NA	NA	150851305	150776443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_150777360_150778866_150778981_150779473_150779642_150781772_150781887_150782591_150782751_150786500_150786571_150787003_150787109_150791258_150792300_150794404_150794713_150795225_150795333_150797491_150797625_150800475_150800557_150800670_150800782_150801687_150801863_150805274_150805416_150806053_150806191_150807997_150808163_150811899_150812053_150812943_150813135_150816023_150816091_150817709_150817883_150821352_150821450_150821917_150822112_150851150
21153	chr3	-	831	7	NNC	ENSMUSG00000027506.16	novel	3081	7	NA	NA	3	159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1236.9164280581	5	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTCAAAGGAGAAACTACC	NA	False	NA	NA	False	NA	NA	NA	9069535	8995688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8995758_8995959_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
21155	chr13	+	2780	14	NNC	ENSMUSG00000062822.9	novel	3406	14	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	45.5583376581885	339	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119599317	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119599656_119602193_119602486_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
21157	chrX	+	2286	17	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	-476	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	972.936837540727	3	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20524659	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535169_20539079_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
21158	chr5	+	2767	18	NNC	ENSMUSG00000029250.6	novel	4145	25	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	113.669343814343	19	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTGTTATCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	77458347	77497171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77492653_77492753_77493097_77493259_77496069_77496266_77496926
21159	chr11	-	3929	30	Antisense	novelGene_ENSMUSG00000103122.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	9	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACCGGGGCCGAGGAGGG	NA	False	NA	NA	False	NA	NA	NA	84184764	84070635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_84070751_84086261_84086512_84104981_84105115_84106657_84106797_84113965_84114078_84115269_84115351_84116958_84117058_84119744_84119847_84122470_84122586_84129649_84129860_84134101_84134272_84136029_84136193_84136517_84136684_84140239_84140389_84142055_84142160_84147507_84147590_84147996_84148146_84150146_84150298_84151447_84151583_84152333_84152481_84153219_84153409_84154095_84154203_84154868_84154953_84161141_84161266_84167355_84167470_84168616_84168733_84169688_84169779_84171214_84171360_84183714_84183859_84184720
21160	chr12	-	2175	2	FSM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	243	7	228	1	multi-exon	FALSE	canonical	3	30	junction_1	0	1469	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAATGTGTTAGGAGCC	9889	False	NA	NA	False	NA	NA	NA	112792766	112783855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_112785733_112792468
21161	chr15	-	2542	15	FSM	ENSMUSG00000036678.9	ENSMUST00000230812.2	2230	15	-320	8	-27	-3	multi-exon	FALSE	canonical	2	3	junction_11	133.897082012375	13	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATTTACCAGGATGTAAC	NA	False	NA	NA	False	NA	NA	NA	102259233	102246694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254396_102254921_102254969_102255112_102255205_102255470_102255527_102258387
21162	chr4	-	3429	5	NNC	ENSMUSG00000008489.19	novel	3671	6	NA	NA	487	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	45.0638435999416	1	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGAACTGTGTATCTTT	NA	False	NA	NA	False	NA	NA	NA	91259706	91139007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_91141808_91152228_91152383_91169450_91169555_91196847_91197089_91259576
21163	chr15	+	2495	19	ISM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	12324	-6	12324	0	3prime_fragment	FALSE	canonical	3	50	junction_1	15.3724340426317	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	98018670	98030328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
21164	chr9	+	3619	23	NIC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_22	51.5317642553865	175	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	5748	False	NA	NA	False	NA	NA	NA	21249135	21266324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264469_21264977
21165	chr7	-	3688	22	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-6	1024	intron_retention	FALSE	canonical	1	41	junction_11	32.8110097113247	145	59	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCGTACCCACCCACCCCA	NA	False	NA	NA	False	NA	NA	NA	29979827	29943832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
21166	chr7	+	2002	2	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	38	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	325	False	NA	NA	False	NA	NA	NA	44465761	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44478375
21167	chr7	-	1592	10	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	8266.83240126575	8	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398344	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397133_126397299_126398216
21168	chr16	+	2699	21	ISM	ENSMUSG00000038084.17	ENSMUST00000161186.8	3153	29	8	30290	-4	3	5prime_fragment	FALSE	canonical	3	253	junction_5	60.2297891412547	82	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGCCCCGTGGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	29398205	29437528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939
21169	chr5	-	2857	21	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	66	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	303.266627738695	1	87	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTGTGTTAACTGTGTG	8357	False	NA	NA	False	NA	NA	NA	137305836	137293983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296056_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301212_137301262_137301301_137305307_137305448_137305685
21170	chr10	+	2917	12	ISM	ENSMUSG00000020156.17	ENSMUST00000141962.8	2858	13	1696	-139	1625	134	3prime_fragment	FALSE	canonical	3	405	junction_2	55.0071370275435	7	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATTCATTGTTCTGCTTA	NA	False	NA	NA	False	NA	NA	NA	80064209	80079871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
21171	chrX	+	1803	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8302	12	-1793	-12	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	1579	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATGTCCTATTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	74147761	74153371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
21172	chr5	-	2727	12	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	610.099666698635	79	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTATCTTGTTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	92231578	92201580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203238_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
21173	chr7	+	2417	17	Antisense	novelGene_ENSMUSG00000052997.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCGATCCCACCCGCGC	NA	False	NA	NA	False	NA	NA	NA	33840127	33867845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_33840889_33842153_33842297_33843915_33844018_33845626_33845733_33846944_33847101_33850212_33850326_33850419_33850513_33853907_33854069_33855308_33855410_33856667_33856789_33857402_33857472_33858242_33858364_33860960_33861063_33862578_33862644_33863809_33863879_33864824_33864911_33867797
21174	chr1	+	2180	6	NNC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	2214.94604900435	6	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863375_160863552_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
21175	chr11	+	4315	28	Antisense	novelGene_ENSMUSG00000002812.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	146	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCGGGGCGGCCGAGAGCC	NA	False	NA	71	True	NA	NA	NA	60605044	60618045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_60605277_60605417_60605479_60605854_60605965_60606111_60606219_60606288_60606420_60606495_60606564_60606630_60606782_60606915_60607373_60607478_60607672_60607964_60608157_60608237_60608337_60608942_60609117_60609406_60609495_60609673_60609740_60609843_60609940_60610524_60610703_60610833_60611044_60611185_60611325_60611466_60611614_60611905_60612428_60612501_60612682_60613118_60613227_60613414_60613575_60613826_60613916_60614193_60614271_60615615_60615692_60615986_60616093_60617947
21177	chr8	-	3180	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238418.2	3180	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	9.33742469849155	168	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	NA	False	NA	NA	NA	70169552	70157786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169417
21179	chr16	+	3104	19	NIC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	15	-1	intron_retention	FALSE	canonical	2	11	junction_12	73.6115094328846	6	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTTTTGCCTCTCTGCT	NA	False	NA	NA	False	NA	NA	NA	20367408	20379567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371072_20371210_20371303_20371381_20377309_20377355_20377446_20378483_20378664_20378798_20378932_20379021_20379106
21180	chr1	+	2724	9	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	265	207	combination_of_known_junctions	FALSE	canonical	2	4	junction_6	45.4938182613858	3	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAATGTTGCTTGTATGT	NA	False	NA	NA	False	NA	NA	NA	173247026	173293813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173247122_173248136_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173289472_173289887_173291424_173291614_173292536
21181	chr8	-	3449	5	Antisense	novelGene_ENSMUSG00000031641.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	126	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCACAAAACAAGGCGCGA	NA	False	NA	NA	False	NA	NA	NA	61958879	61940778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_61941024_61942972_61943093_61944576_61944712_61948100_61948235_61956064
21182	chr6	-	3024	10	NNC	ENSMUSG00000040669.15	novel	3839	14	NA	NA	2589	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	441.375739262906	1	97	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTATACAAAATATTAAATA	NA	False	NA	NA	False	NA	NA	NA	122309515	122294747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302512_122302873_122309483
21184	chr4	-	3040	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	17	-2238	0	2238	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	1806	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACCTGTTTTCCCTTGA	2681	False	NA	NA	False	NA	NA	NA	62326862	62310581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
21185	chr15	-	1480	10	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	0	1602	0	-420	5prime_fragment	FALSE	canonical	3	5476	junction_5	296.264813142183	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTTTCAGAAAATAGTGGC	NA	False	NA	NA	False	NA	NA	NA	31601950	31592547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
21186	chr3	-	2441	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	0	2170	0	-2170	multi-exon	FALSE	canonical	3	847	junction_1	36.5	723	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGTTGTAAAAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	58433313	58429407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_58431290_58432503_58432580_58432830
21187	chr11	-	4318	9	NNC	ENSMUSG00000010392.9	novel	4289	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	87.2273430467763	297	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTCTTTGGTTATCTG	NA	False	NA	NA	False	NA	NA	NA	76654393	76617427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_76621101_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
21188	chr8	-	2900	19	NIC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	3	junction_18	48.6081903884469	3	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	NA	False	NA	NA	NA	84467777	84449992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84461040_84467735
21189	chr4	-	3540	10	NNC	ENSMUSG00000035495.16	novel	3726	10	NA	NA	224	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.7194419224353	1	74	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTTCCAAACTAGGTGGGA	3144	False	NA	NA	False	NA	NA	NA	46135554	46114755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_46114991_46115030_46117084_46119142_46119282_46119840_46120000_46120447_46120567_46124042_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386
21190	chr1	+	2254	8	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-18	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	346.516130319252	2	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGATTGCTTTATATAGT	NA	False	NA	NA	False	NA	NA	NA	4878100	4916956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4915882_4915959
21191	chr4	+	2869	7	ISM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	22597	26	8919	-3	3prime_fragment	FALSE	canonical	3	589	junction_3	44.9580050961141	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCTAACTGAGACTGTTC	NA	False	NA	NA	False	NA	NA	NA	107247577	107273517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
21193	SIRV10001	-	2498	2	Antisense	novelGene_SIRV10001A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTCTTCACATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	3349	813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV10001_-_3006_3043
21194	SIRV8001	+	3627	1	FSM	SIRV8001A	SIRV8001	8001	1	4374	0	4374	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	4374	8001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV8001_+_4400_8000
21195	chr6	-	2366	10	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.077870224551	3	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72410043_72410481_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
21196	chr11	+	3372	10	NNC	ENSMUSG00000100629.2	novel	778	2	NA	NA	-2095	26278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	59	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCTTCCTGGGTCTGCGCT	NA	False	NA	NA	False	NA	NA	NA	120852574	120881868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120854735_120855777_120855842_120858825_120858961_120859848_120860020_120862391_120862542_120863202_120863297_120863790_120864021_120864646_120864796_120874058_120874168_120881758
21197	chr12	-	4883	15	FSM	ENSMUSG00000021236.17	ENSMUST00000120942.8	4881	15	-1	-1	-1	1	multi-exon	FALSE	canonical	2	7	junction_13	11.8983792413685	91	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATAGTTTTCCTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	84455789	84420650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84452179_84452250_84455743
21198	chr12	+	1812	8	FSM	ENSMUSG00000097451.12	ENSMUST00000238384.2	2352	8	533	7	-17	0	multi-exon	FALSE	canonical	3	549	junction_5	36.3862499259469	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	1434	False	NA	NA	False	NA	NA	NA	109617205	109628143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
21199	chr7	-	2242	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	22	18	-6	-18	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	1080	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTGTGCTTAACTGAGT	NA	False	NA	NA	False	NA	NA	NA	27252615	27231442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
21200	chr19	-	2779	20	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAATTCGCGCGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	38956722	38919403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38919530_38919845_38919950_38923850_38923978_38926847_38926905_38928912_38928950_38929038_38929104_38933832_38934010_38935160_38935311_38938629_38938827_38940276_38940374_38941984_38942147_38943132_38943271_38943355_38943490_38945471_38945561_38945639_38945762_38947487_38947604_38948111_38948273_38953040_38953136_38953848_38953927_38956175
21201	chr14	-	3056	9	Antisense	novelGene_ENSMUSG00000016831.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCATCGCTCCCACCGCCCC	NA	False	NA	NA	False	NA	NA	NA	52531958	52517067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_52517112_52517275_52517345_52523114_52523359_52524184_52524361_52524755_52524987_52528215_52528297_52528929_52529674_52529974_52530139_52530655
21202	chr11	-	3203	7	NNC	ENSMUSG00000025155.16	novel	3062	12	NA	NA	-6	1474	intron_retention	FALSE	canonical	1	10	junction_3	393.153066035779	4	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGGAAGAAGAAGGCAGCA	NA	False	NA	NA	False	NA	NA	NA	120687209	120682125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120682770_120682852_120683326_120683516_120683617_120683853_120684773_120685093_120685145_120685728_120685838_120686302
21205	chr11	-	2662	11	NNC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	-26050	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	193.531496144684	7	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCATGAGCTGTGTTCCGT	NA	False	NA	NA	False	NA	NA	NA	113482655	113135684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113476290_113476328_113482607
21206	chr14	+	2366	8	Antisense	novelGene_ENSMUSG00000041028.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	79	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTAGTTAGAAAGGTAGAG	NA	False	NA	NA	False	NA	NA	NA	36842773	36855758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_36844184_36847115_36847267_36847862_36848029_36849536_36849653_36852592_36852735_36853494_36853607_36855127_36855227_36855588
21208	chr6	-	2318	3	ISM	ENSMUSG00000030083.12	ENSMUST00000203272.3	4556	6	3582	-229	313	5	3prime_fragment	FALSE	canonical	3	333	junction_2	37	12	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGACCTGAGCCTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	88815384	88812900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_88813435_88813506_88815268_88815361
21209	chr6	+	2817	20	ISM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	8773	5	-8128	4	3prime_fragment	FALSE	canonical	3	149	junction_6	26.7527925898838	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTACACTTTGTGTCACTG	NA	False	NA	NA	False	NA	NA	NA	90536559	90576146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
21210	chr2	+	1949	10	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	388	5	-13	1	3prime_fragment	FALSE	canonical	3	1876	junction_7	222.148154323046	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116737	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
21211	chr10	+	2298	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-28	-3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	114.808536267997	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAAATTATGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	44144325	44240284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44179562_44179726_44195455_44195551_44222952_44223071_44238911
21212	chr7	-	3286	2	ISM	ENSMUSG00000030541.17	ENSMUST00000139178.8	1085	5	-142	-180	-142	1	intron_retention	FALSE	canonical	3	1979	junction_1	0	9	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTCTTGATGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	79748299	79744596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_79744952_79745368
21213	chr13	+	2467	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	278	-7	3	7	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	237	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTCTTGCTAGGAAATG	4766	False	NA	NA	False	NA	NA	NA	38221248	38245416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
21214	chr12	+	3326	1	FSM	ENSMUSG00000021908.11	ENSMUST00000022467.11	1878	1	-46	-1402	-46	1402	mono-exon	FALSE	NA	NA	NA	NA	NA	2	93	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAGCATAATGGACAAA	NA	False	NA	NA	False	NA	NA	NA	119224666	119227992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_119224700_119228000
21215	chr11	-	3941	17	NIC	ENSMUSG00000061306.17	novel	4578	17	NA	NA	43	2	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	204.729156066619	280	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCGAGTCGAGTTGGTTT	5106	False	NA	NA	False	NA	NA	NA	120042062	119995275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119996863_119997259_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029919_120031418_120031513_120032425_120032472_120038546_120038665_120041805
21216	chr5	+	3708	12	Antisense	novelGene_ENSMUSG00000106772.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	61	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTGGCCATCCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	66457718	66608975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_66460053_66464877_66465060_66466422_66466543_66468348_66468427_66469501_66469590_66470657_66470772_66520059_66520185_66522314_66522464_66548969_66549031_66549114_66549200_66557417_66557625_66608810
21217	chr15	+	2984	19	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	80.8312714513662	2	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57775637	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57779365_57779513_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824328_57831300_57831401_57833119
21219	chr10	-	3473	11	NNC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-11	-4	intron_retention	FALSE	canonical	0	0	junction_10	24.7364104105668	23	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTTCTGGGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	87982751	87927297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982422
21220	chr1	+	1178	10	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	2474	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	630.681113294719	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGTTTTGTGATCT	NA	False	NA	NA	False	NA	NA	NA	59740048	59750665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59740109_59741971_59742107_59743221_59743368_59743782_59743808_59744828_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
21221	chr10	+	2491	14	NIC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	17	-10	intron_retention	FALSE	canonical	3	684	junction_13	493.082791276733	4	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTCTCATGGGATGCTG	NA	False	NA	NA	False	NA	NA	NA	111309119	111332735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111331237_111331900_111331967_111332614
21222	chr9	-	4190	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	94	-626	94	626	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	243	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAATGAGAAGATGGT	NA	False	NA	NA	False	NA	NA	NA	79700618	79675598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
21223	chr2	+	2105	10	NIC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	2	1	intron_retention	FALSE	canonical	3	1724	junction_1	120.327126135176	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTCTTTCTCAGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	90884401	90889780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90884677_90884919_90885450_90885802_90885908_90885992_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
21224	chr4	+	2944	11	FSM	ENSMUSG00000028550.16	ENSMUST00000030279.15	3178	11	234	0	21	0	multi-exon	FALSE	canonical	3	33	junction_1	14.1265707091282	228	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99082404	99148024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99082690_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
21225	chr1	-	4485	6	Antisense	novelGene_ENSMUSG00000050565.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCCAGCCGCCACGGCA	4064	False	NA	NA	False	NA	NA	NA	155943652	155916662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_155916749_155927037_155927370_155935156_155935331_155937330_155937915_155939337_155939439_155940444
21226	chr4	+	2935	25	NNC	ENSMUSG00000017264.17	novel	1188	9	NA	NA	279	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	126.233222207503	5	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	148643197	148666850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643501_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
21227	chr4	-	3722	5	NIC	ENSMUSG00000043962.17	novel	339	5	NA	NA	0	-542	intron_retention	FALSE	canonical	3	517	junction_4	131.283091066595	10	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGAGCGTTACATTAGG	6787	False	NA	NA	False	NA	NA	NA	126096440	126069700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126070150_126071654_126074608_126080227_126080382_126088109_126088198_126096362
21228	chr12	-	3289	10	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	35	-5	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	27.7959940270287	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGCTTTTGCCCATGAA	NA	False	NA	NA	False	NA	NA	NA	83923537	83840849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441
21230	chr14	+	2720	12	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	95.2453985786884	93	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	99283871	99311976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291053_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
21231	chr11	+	1861	8	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	-5	-8	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	2575.49587062217	23	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGCACTCGGGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	95557820	95571591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95557869_95558862_95558978_95560702_95560811_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
21232	chrX	+	2041	9	NNC	ENSMUSG00000031007.3	novel	2324	9	NA	NA	4	-245	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	355.572931161808	1	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGGACTGGCTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	12454043	12483043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_12454141_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
21233	chr3	-	2171	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	-12	-2	0	2	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662195	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
21234	chr1	+	5927	18	NNC	ENSMUSG00000025969.16	novel	6342	17	NA	NA	107	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	5.43664358088753	47	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAACTATTTTTCCTAC	4115	False	NA	NA	False	NA	NA	NA	62742550	62857841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_62743437_62758088_62758267_62777447_62777630_62783333_62783565_62784516_62784673_62786316_62786487_62788291_62788448_62799933_62800079_62801849_62802200_62804008_62804154_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62851692_62851744_62854491_62856108_62856819
21235	chr15	+	1489	4	Antisense	novelGene_ENSMUSG00000072235.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.471404520791032	99	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCACTTGGGCGGATGCG	NA	False	NA	NA	False	NA	NA	NA	98847877	98851430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98848898_98849071_98849218_98849349_98849575_98851332
21236	chr16	-	2938	16	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	522.061001118537	3	74	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8116	False	NA	NA	False	NA	NA	NA	4867721	4831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832723_4833227_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4837953_4838233_4839201_4839295_4844371_4844467_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4867642
21237	chr17	-	2845	5	NNC	ENSMUSG00000073406.11	novel	1064	6	NA	NA	-25	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	208.447235529762	63	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAAACTATGTTTCCTGC	NA	False	NA	NA	False	NA	NA	NA	36395140	36391008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36391216_36391890_36392008_36392133_36392627_36392918_36394858_36395051
21238	chr12	-	2579	12	NNC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	4	-205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	68.0420385369549	441	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTCTTTGATTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	32000229	31976457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31977507_31978582_31978725_31980680_31980824_31980876_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
21239	chr19	-	2148	3	NNC	ENSMUSG00000024742.16	novel	2341	2	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416	23	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2175	False	NA	NA	False	NA	NA	NA	10181287	10176501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10176868_10176915_10178462_10181051
21240	chr3	+	1834	17	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-13	520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	323.684301973003	860	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTAACTGAGGGTT	NA	False	NA	NA	False	NA	NA	NA	69629304	69656895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650845_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104_69656375_69656880
21241	chr15	-	1267	2	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1730	15	1603	-15	3prime_fragment	FALSE	canonical	3	3388	junction_1	0	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAGAAAAGAGTTTTGT	1761	False	NA	NA	False	NA	NA	NA	98830716	98829320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572
21242	chr8	+	2383	11	NNC	ENSMUSG00000038482.12	novel	2421	11	NA	NA	-9	-80	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_6	385.148296114626	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATAAAGAGACTTTAATT	2134	False	NA	NA	False	NA	NA	NA	13388781	13428362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421079_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
21243	chr14	+	1914	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-1	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	577.702529869613	1	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGCTAGGGAGGGCATGG	NA	False	NA	NA	False	NA	NA	NA	30271166	30295460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287624_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
21244	chr17	+	2040	4	NIC	ENSMUSG00000046711.17	novel	1681	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	3635	junction_2	706.682546991379	19	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACAGTCTCTGGTGTA	NA	False	NA	NA	False	NA	NA	NA	27775626	27782637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_27775686_27778506_27778678_27779901_27780486_27781411
21245	chr6	+	3737	29	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	-13	1635	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	112.811309635305	1	131	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGTCCAAAAAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	116185069	116237578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193024_116193181_116194710_116194805_116195621_116195684_116196913_116196950_116197493_116197606_116198776_116198859_116200156_116200214_116201381_116201491_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233576_116233790_116235602_116236218_116237451
21247	chr1	-	2294	12	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	309.200568782687	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624052	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591776_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
21251	chr16	-	1550	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	-4	multi-exon	FALSE	non_canonical	0	0	junction_1	0	94	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45974088_45974626
21252	chr15	+	1827	12	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-22	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	512.070001025654	628	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959425	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78978382
21253	chr19	+	2597	9	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-4	-4	intron_retention	FALSE	canonical	3	402	junction_1	84.6935652809586	50	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGGTTTGACCTACTG	3606	False	NA	NA	False	NA	NA	NA	4198648	4204028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520
21254	chr6	-	2787	7	Antisense	novelGene_ENSMUSG00000040242.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	383	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGACCCGCAGCCGCTGAGC	1490	False	NA	NA	False	NA	NA	NA	146500695	146479448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_146479705_146487177_146487319_146490238_146490358_146491394_146491533_146494129_146494246_146496673_146496786_146498790
21255	chr9	-	1612	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	31	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	5340.69375695289	18	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	8167	False	NA	-13	True	NA	NA	NA	78387939	78385739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387643_78387788
21256	chr11	-	2199	5	NNC	ENSMUSG00000020737.13	novel	1375	5	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	726.210842317849	24	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGCACCGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	115405210	115388184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115389602_115391134_115391511_115392830_115392929_115393857_115394001_115405045
21257	chr19	+	2255	8	FSM	ENSMUSG00000024993.16	ENSMUST00000119633.8	2267	8	20	-8	0	8	multi-exon	FALSE	canonical	3	56	junction_2	141.985771060601	664	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	60800048	60824673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_60800112_60803029_60803247_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
21258	chr7	+	2449	17	NNC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	225	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	1005.88486387608	2103	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTCATGCCTCAGCTGT	NA	False	NA	NA	False	NA	NA	NA	12758303	12764959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12758421_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
21259	chr8	+	2593	6	FSM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	-117	17	32	-17	multi-exon	FALSE	canonical	3	18	junction_4	146.129531580718	59	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCATCCAGCACCAAG	NA	False	NA	NA	False	NA	NA	NA	48563079	48594681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213_48591914_48593377
21260	chr5	+	3357	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	117	5	51	-5	multi-exon	FALSE	canonical	3	48	junction_6	9.89356624586021	4	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTATGGTGGTGCATTC	8194	False	NA	NA	False	NA	NA	NA	138170380	138178686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
21261	chrX	-	3000	14	NNC	ENSMUSG00000057421.13	novel	4126	10	NA	NA	10	15290	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	332.853540299545	89	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGGGTGGAAAGGCATTTC	NA	False	NA	NA	False	NA	NA	NA	95000509	94963650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94964399_94964751_94964799_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
21262	chr3	+	2450	15	NNC	ENSMUSG00000063052.10	novel	2701	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	337.03279831918	2	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742386	157772727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747499_157747571_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771953
21263	chr7	-	2082	9	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	410.171305676055	1384	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	NA	False	NA	NA	NA	78798771	78783515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795163_78795301_78795493_78798642
21264	chrX	+	1682	8	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-47	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1353.50438582554	99	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTTTTCATTTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	100473293	100492186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483231_100488293_100488397_100488900_100488941_100489724_100489835_100491199
21265	chr12	+	3590	8	Antisense	novelGene_ENSMUSG00000047534.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACGGACAAATAGCGCTG	7474	False	NA	NA	False	NA	NA	NA	65190041	65219354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_65190167_65195495_65196325_65199461_65200667_65201491_65201624_65203765_65203839_65205167_65205636_65208176_65208805_65219224
21266	chr12	+	1149	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	41	187	29	-187	multi-exon	FALSE	canonical	3	2699	junction_7	143.152890295656	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTTAGTCCAGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	87313512	87320566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
21267	chr13	-	2950	15	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	-5	-5	intron_retention	FALSE	canonical	3	642	junction_9	45.3737314996693	5	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCAGTTCTTCCTCTC	NA	False	NA	NA	False	NA	NA	NA	55684328	55678233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
21268	chr2	+	2095	10	NIC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	3095	969	combination_of_known_splicesites	FALSE	canonical	1	52	junction_1	963.152283383918	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCGCCCCGACTCTGC	NA	False	NA	NA	False	NA	NA	NA	162904363	162925588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_162904470_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
21269	chr10	-	2801	5	Antisense	novelGene_ENSMUSG00000019818.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	107	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGCACTGCGTCCCTGCG	8427	False	NA	NA	False	NA	NA	NA	41407010	41395478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_41395690_41397909_41398001_41399166_41399258_41402814_41402878_41404665
21270	chr3	+	3408	7	FSM	ENSMUSG00000037730.14	ENSMUST00000195396.6	4775	7	-5	1372	-5	0	multi-exon	FALSE	canonical	3	28	junction_5	75.410911382608	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGACTCAACCCTTTTTA	8774	False	NA	NA	False	NA	NA	NA	30656774	30672650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
21271	chr16	-	1743	14	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	25	111	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1795.89088505007	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCCGTCTGTTTAATCA	NA	False	NA	NA	False	NA	NA	NA	87292651	87280764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285690_87285901_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
21272	chr6	+	2695	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	69	2	7	-2	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	237	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGTCTCAGGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	146479425	146500694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
21273	chr13	-	4845	7	NNC	ENSMUSG00000016477.19	novel	5097	7	NA	NA	7	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	46.6919574326124	175	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAAGAGTTCAGACTT	NA	False	NA	NA	False	NA	NA	NA	30170039	30090572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30169512
21274	chr7	+	5384	18	NNC	ENSMUSG00000038611.18	novel	5248	18	NA	NA	-2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	60.1415285822335	2	47	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTTTAGAAACTTTTC	NA	False	NA	NA	False	NA	NA	NA	140808694	140842646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140826759_140826858_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841451_140841661_140841818_140842321
21275	chr15	+	1776	11	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	33540	1	-1230	-1	3prime_fragment	FALSE	canonical	3	1727	junction_3	149.910139750452	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCTGCCTGAGTGATTG	NA	False	NA	NA	False	NA	NA	NA	81790049	81799333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
21276	chr6	+	1461	7	NNC	ENSMUSG00000030060.15	novel	1572	6	NA	NA	-178	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	526.39858683532	811	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGCTGGCAAGAGTTCT	2786	False	NA	NA	False	NA	NA	NA	87890738	87913596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87890828_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
21277	chr2	-	1596	1	Antisense	novelGene_ENSMUSG00000082809.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	52	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATATTTTCTTTATTTAC	NA	False	NA	NA	False	NA	NA	NA	151302373	151300777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_151300800_151302400
21278	chr1	+	3225	12	NNC	ENSMUSG00000073652.11	novel	826	3	NA	NA	-16799	-4073	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGAGCCCCAAGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	71675196	71692331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_71676555_71677615_71677747_71679452_71679607_71680313_71680488_71681110_71681291_71682118_71682310_71684704_71684862_71687167_71687306_71688352_71688485_71689720_71689861_71690679_71690809_71691990
21279	chrX	-	4535	10	Antisense	novelGene_ENSMUSG00000004221.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	173	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTCCGGTGTCGTAAGTG	134	False	NA	NA	False	NA	NA	NA	73495112	73473293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73473426_73476408_73476611_73477406_73477619_73480767_73480887_73482510_73482664_73483478_73483555_73486948_73487091_73487373_73487519_73491462_73491524_73491819
21280	chrX	-	2039	11	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	433.103694281173	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAAACCTGTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	100128978	100122817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123115_100123716_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
21281	chr3	-	2140	13	NNC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	337	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_12	255.923653980375	13	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	NA	False	NA	NA	NA	127346509	127330362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346323
21282	chr13	-	2239	5	NNC	ENSMUSG00000114172.2	novel	1732	3	NA	NA	-9960	467	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.7875676737048	41	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAACCTTTGCATATCAC	NA	False	NA	NA	False	NA	NA	NA	62801026	62787232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62788652_62788723_62789246_62790689_62790751_62790936_62791064_62800916
21283	chr19	+	2323	5	NNC	ENSMUSG00000071653.10	novel	500	5	NA	NA	-16	1746	at_least_one_novel_splicesite	FALSE	non_canonical	3	20	junction_4	1387.41215938163	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8866246	8869991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774_8868258_8868456
21284	chr15	+	2904	18	NNC	ENSMUSG00000022186.15	novel	3527	17	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	65.4783304972407	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	NA	False	NA	NA	NA	4056114	4184826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209_4183886_4184258
21285	chr4	+	3763	10	FSM	ENSMUSG00000045917.18	ENSMUST00000077709.11	3765	10	0	2	0	2	multi-exon	FALSE	canonical	3	52	junction_1	11.4901997962622	165	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGTAAGGGACCATG	NA	False	NA	NA	False	NA	NA	NA	63477017	63504592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_63477195_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
21286	chr11	+	3022	9	NIC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	28	819	intron_retention	FALSE	canonical	3	1417	junction_7	123.061404896092	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCACCGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	109541774	109558621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
21287	chr7	-	3335	21	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-13	-3	intron_retention	FALSE	canonical	3	117	junction_16	20.2598124374339	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697699	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
21289	chr9	+	1115	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1494	-167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6797.19714744427	11	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAACATGTGGTGACAAA	NA	False	NA	NA	False	NA	NA	NA	64082168	64085781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084376_64085002_64085087_64085178_64085300_64085504
21290	chr2	+	1899	10	NIC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	16	0	intron_retention	FALSE	canonical	3	1724	junction_1	115.46150018379	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	90884369	90889777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
21292	chr3	+	3036	9	NIC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	5	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	69.7387983836831	67	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGTATGCCTTCATAG	NA	False	NA	NA	False	NA	NA	NA	116306781	116343628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_116306841_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
21293	chr9	-	3761	20	FSM	ENSMUSG00000059890.17	ENSMUST00000117549.8	3415	20	-19	-327	-19	327	multi-exon	FALSE	canonical	2	4	junction_19	14.0720347023741	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCCTCGGTTTTCCTAT	5281	False	NA	NA	False	NA	NA	NA	44876917	44836818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44837274_44840959_44841118_44843639_44843788_44844595_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44876782
21294	chr17	-	4243	11	NNC	ENSMUSG00000090231.11	novel	905	8	NA	NA	-75	5956	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1266	26	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTACTGCGCGCTGGCTC	7520	False	NA	NA	False	NA	NA	NA	35078092	35069393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35069562_35069883_35069968_35071317_35071390_35071491_35071636_35072398_35072474_35072586_35072625_35072781_35073109_35073194_35073342_35073420_35073474_35073669_35073771_35075058
21296	chr16	-	2428	2	NIC	ENSMUSG00000033809.16	novel	997	6	NA	NA	1675	-509	intron_retention	FALSE	canonical	3	261	junction_1	0	9	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCTTAACCATCACATCA	NA	False	NA	NA	False	NA	NA	NA	20427806	20424777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20426635_20427235
21297	chr11	+	1912	2	FSM	ENSMUSG00000020385.17	ENSMUST00000133200.2	442	2	18	-1488	6	1488	multi-exon	FALSE	canonical	3	128	junction_1	0	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTTTTATGTCAATT	NA	False	NA	NA	False	NA	NA	NA	51154006	51159819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51154097_51157997
21298	chr5	+	3864	6	FSM	ENSMUSG00000055991.16	ENSMUST00000085671.10	3794	6	-74	4	-74	-4	multi-exon	FALSE	canonical	3	45	junction_2	9.08625335328044	158	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCTGACTTGAGGTTTC	863	False	NA	NA	False	NA	NA	NA	145141297	145158556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155694_145156862
21299	chr15	+	2456	15	Antisense	novelGene_ENSMUSG00000022283.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	77	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCACCGCCTCCTGCAC	NA	False	NA	NA	False	NA	NA	NA	36596269	36609215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36596346_36596807_36596898_36597205_36597337_36597698_36597786_36598216_36598372_36598445_36598557_36599195_36599291_36599451_36599718_36600832_36600932_36601112_36601251_36601557_36601653_36603088_36603233_36605686_36605799_36605982_36606182_36608557
21300	chr11	-	3288	12	FSM	ENSMUSG00000020805.15	ENSMUST00000021161.14	3329	12	24	17	-22	-17	multi-exon	FALSE	canonical	3	36	junction_1	6.58196885814471	143	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTCCACCTCCTGG	NA	False	NA	NA	False	NA	NA	NA	72157461	72132831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289
21302	chr7	+	2838	8	NIC	ENSMUSG00000058454.16	novel	2815	9	NA	NA	-127	0	combination_of_known_splicesites	TRUE	canonical	1	12	junction_1	143.520744429621	249	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	143376754	143402147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_143377278_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
21303	chr12	+	3001	9	NIC	ENSMUSG00000060073.10	novel	1027	10	NA	NA	6	0	intron_retention	FALSE	canonical	3	3391	junction_6	452.970956574481	19	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4794	False	NA	NA	False	NA	NA	NA	71021468	71041278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71037306_71039786_71039855_71040279_71040345_71041124
21305	chr5	-	3660	21	NIC	ENSMUSG00000029456.13	novel	3826	21	NA	NA	4	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_20	15.036954478883	85	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATCCTGTTCTGAGCTA	NA	False	NA	NA	False	NA	NA	NA	121798573	121759093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076_121794318_121798355
21306	chr5	-	2146	11	NIC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	13	-5	combination_of_known_splicesites	FALSE	canonical	3	22	junction_7	179.096761556428	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92583065	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92575958_92576186_92578659_92578813_92578897_92578982_92582862
21307	chrUn_JH584304v1	+	1727	1	Intergenic	novelGene_4594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCTTTTTAAAGTTAAT	NA	False	NA	NA	False	NA	NA	NA	34137	35864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_34100_35900
21308	chr1	+	2858	5	NIC	ENSMUSG00000026520.9	novel	1580	7	NA	NA	-9	0	intron_retention	FALSE	canonical	3	1025	junction_2	54.3737068811756	99	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	7	False	NA	NA	False	NA	NA	NA	180731848	180735653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180732096_180732308_180733619_180733727_180734253_180734354_180734519_180735041
21309	chr1	-	4775	16	NNC	ENSMUSG00000026409.15	novel	2849	15	NA	NA	4	-1244	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.64954610127657	54	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGGAAGGCTTCTGGT	3923	False	NA	NA	False	NA	NA	NA	130643547	130619995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_130622642_130625159_130625823_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202_130642314_130643457
21310	chr5	-	2206	9	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	6	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	291.131172111473	116	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGGCTATGTGAACTTT	NA	False	NA	NA	False	NA	NA	NA	124717089	124708274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124716766
21311	chr2	+	2264	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	-4	1215	0	491	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAATCCACATCCATTTG	NA	False	NA	NA	False	NA	NA	NA	181138975	181158540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
21312	chr2	-	2895	12	NIC	ENSMUSG00000013465.20	novel	2637	13	NA	NA	-18	-1	intron_retention	FALSE	canonical	3	539	junction_7	55.8576999582698	11	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCATGGTGAGGAATCTGT	NA	False	NA	NA	False	NA	NA	NA	25101411	25089728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100550_25100720_25100885_25101113
21313	chr2	+	1831	11	NIC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	1724	junction_1	114.613088257843	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGTCTTTCTCAGCCTC	NA	False	NA	NA	False	NA	NA	NA	90884353	90889778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
21314	chr19	-	1976	13	NIC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	3	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	939.527186053354	3	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTACGGTCTCCAGTGA	3766	False	NA	NA	False	NA	NA	NA	7017332	6998073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
21315	chr14	+	1901	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	54	2788	2	1272	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359964	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
21318	chr11	-	2530	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	-22	-3	-22	3	multi-exon	FALSE	canonical	3	139	junction_9	17.9669117367279	466	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTATTTTTTAATTCT	NA	False	NA	NA	False	NA	NA	NA	34724490	34700013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
21319	chr13	-	4417	15	NNC	ENSMUSG00000021147.18	novel	4526	14	NA	NA	8	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	21.7040624430223	84	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATTATAAAGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	8921051	8853030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_8854360_8854439_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
21320	chr7	+	2330	8	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	331.480537797886	1792	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896248_43896661_43896841_43897333_43897484_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
21321	chr15	+	1773	7	NNC	ENSMUSG00000022369.14	novel	2570	12	NA	NA	-6595	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	95.2936980544301	6	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCTTGGATTGCATGTC	NA	False	NA	NA	False	NA	NA	NA	55474387	55489817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55474430_55475125_55475224_55480877_55481145_55483033_55483321_55483403_55484133_55488786_55488853_55489533
21322	chr13	+	2018	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588130	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615344_3615510
21323	chr2	+	6789	11	NNC	ENSMUSG00000027035.11	novel	1279	11	NA	NA	6	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	18.4759302878096	56	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTACAGCATGAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	68691819	68944620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_68692150_68764858_68764965_68777570_68777702_68833090_68833149_68877488_68877540_68881123_68881217_68898972_68899102_68901675_68901783_68935346_68935504_68938785_68943365_68943572
21324	chr6	-	2126	7	NIC	ENSMUSG00000005667.9	novel	1421	9	NA	NA	0	-309	intron_retention	FALSE	canonical	3	2400	junction_4	131.812577379989	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTCAGACTGTTAAGAG	NA	False	NA	NA	False	NA	NA	NA	83294535	83282981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83283792_83285914_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
21325	chr7	+	1787	9	NNC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2729.13580357867	5	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGCATGCTAATGGGACT	NA	False	NA	NA	False	NA	NA	NA	142606524	142621654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_142606804_142615396_142615717_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
21326	chr1	-	1861	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	0	-366	at_least_one_novel_splicesite	FALSE	canonical	1	159	junction_3	2075.67930929643	6	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTCTGAGGATACCACT	NA	False	NA	NA	False	NA	NA	NA	86287086	86279188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86279216_86279919_86280042_86280231_86280356_86280850_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
21327	chr17	-	1286	7	Antisense	novelGene_ENSMUSG00000007039.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	107	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCGGGGCATTGTCTAA	NA	False	NA	NA	False	NA	NA	NA	35281063	35278064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35278246_35279073_35279436_35279576_35279678_35279807_35279882_35279979_35280100_35280450_35280600_35280764
21328	chrM	+	1255	2	Genic_Genomic	ENSMUSG00000064351.1_ENSMUSG00000064353.1	novel	1545	1	NA	NA	319	-68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	240	False	NA	26	True	NA	NA	NA	5646	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_6849_6890
21330	chr2	+	3821	13	NIC	ENSMUSG00000027330.17	novel	3089	16	NA	NA	-1	1	intron_retention	FALSE	canonical	3	45	junction_7	17.6438531946839	4	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGTTTGTTATGCAGAG	NA	False	NA	NA	False	NA	NA	NA	131028867	131040418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033642_131033732_131033856_131034476_131035069_131035158_131035333_131035514_131035608_131036034_131036680_131038896_131039009_131039148
21331	chrX	-	1971	10	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_9	217.539836000015	995	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	138963079	138907553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138961523_138961572_138962996
21332	chr6	-	2902	17	NIC	ENSMUSG00000029676.16	novel	3151	18	NA	NA	-6	-208	combination_of_known_junctions	FALSE	canonical	3	22	junction_14	31.693847983481	216	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTTTGTGTCTGTGTGT	-6	True	NA	NA	False	NA	NA	NA	25809231	25743943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25800282_25800510_25805873_25805941_25809173
21334	chr1	+	2653	9	NIC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	-24	-1	intron_retention	FALSE	canonical	2	9	junction_4	184.35766867695	3	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATTGTCGTCGTGTCTGG	8161	False	NA	NA	False	NA	NA	NA	134333708	134339477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334598_134334705_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230
21335	chr4	-	2169	10	Antisense	novelGene_ENSMUSG00000080732.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	87	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCGAGAATGCTGGAATG	NA	False	NA	NA	False	NA	NA	NA	145351807	145237358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237495_145239545_145239637_145241464_145241590_145314002_145314093_145322277_145322345_145343685_145343736_145347119_145347254_145348720_145348866_145350197_145351037_145351315
21336	chr10	-	2533	15	NNC	ENSMUSG00000020166.16	novel	2693	15	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	180.991782990842	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCCTCACTGCAGTGTT	NA	False	NA	NA	False	NA	NA	NA	116417390	116321079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116322098_116328222_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
21337	chr4	+	3136	8	NNC	ENSMUSG00000028836.15	novel	3102	8	NA	NA	3	-37	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	94.8937106795314	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACCCCAATTTAAAAAAAA	2344	False	NA	NA	False	NA	NA	NA	134070779	134081751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_134070938_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
21338	chr3	+	2787	19	NIC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	-4	-335	combination_of_known_splicesites	FALSE	canonical	3	53	junction_1	128.387350344164	1	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAAGTCTTGTTGACAC	NA	False	NA	NA	False	NA	NA	NA	54600521	54623923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_54600835_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954
21339	chr13	+	2502	23	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	12	35	combination_of_known_junctions	FALSE	canonical	3	6	junction_16	172.648193620236	817	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGCTGCCCTG	1321	False	NA	NA	False	NA	NA	NA	59733219	59782601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773277_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
21340	chr18	-	3390	17	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	-51	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_16	59.6247379449168	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATATGCTTAGAGTTTT	41	False	NA	NA	False	NA	NA	NA	6136021	6025223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6073210_6073287_6135803
21341	chr7	-	3270	22	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-16	-7	intron_retention	FALSE	canonical	3	95	junction_6	23.6339238865797	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTTCTGAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	140697735	140681144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
21342	chr4	+	3738	19	NNC	ENSMUSG00000045751.17	novel	4478	24	NA	NA	-187	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	51.9948062458474	1	119	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGAAACAAAACAGCTCT	8508	False	NA	NA	False	NA	NA	NA	24504974	24602937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602610
21343	chr1	+	2298	10	NIC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-89	-246	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	218.75224161109	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177715	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_167177986_167180088_167180235_167181995_167182126_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
21344	chr8	-	2628	10	NNC	ENSMUSG00000002885.15	novel	3000	20	NA	NA	-4415	-643	intron_retention	FALSE	non_canonical	0	0	junction_7	71.1718490610258	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAGAAGTTAAGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	84459374	84451089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84455070_84455685_84455796_84456010_84456155_84456739_84456887_84458531
21345	chr6	+	4145	30	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	119.731427554974	1	165	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCACAGAGGTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	116185050	116239622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195624_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201938_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232140_116233598_116233790_116235602_116236218_116237451_116237625_116239295
21347	chr2	+	3343	13	NNC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	1	-5	intron_retention	FALSE	non_canonical	0	0	junction_12	97.835746705043	20	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGAAGTTCTGTGGTTTG	4068	False	NA	NA	False	NA	NA	NA	180609060	180624246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622826
21348	chr19	-	3312	12	Antisense	novelGene_ENSMUSG00000098363.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	117	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGAGAGGTGCGCGC	9234	False	NA	NA	False	NA	NA	NA	10174228	10160393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10160628_10162289_10162400_10163046_10163245_10163739_10163838_10164112_10164246_10168801_10168865_10170275_10170349_10171058_10171161_10171357_10171447_10171669_10171762_10171852_10171979_10172234
21349	chr3	-	5261	27	ISM	ENSMUSG00000060671.13	ENSMUST00000168276.8	4265	28	2365	-1346	-514	-14	3prime_fragment	FALSE	canonical	3	105	junction_26	24.8883007614602	2	98	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCAATTTCTGAGAGGT	3298	False	NA	NA	False	NA	NA	NA	89868450	89846809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89848739_89848981_89849113_89850636_89850776_89850920_89851167_89851415_89851500_89852303_89852528_89852788_89852973_89853227_89853373_89853485_89853592_89853734_89853847_89853931_89854097_89855110_89855227_89855353_89855543_89855693_89855860_89856275_89856320_89857115_89857325_89859981_89860179_89861508_89861598_89861746_89861906_89864317_89864398_89864604_89864676_89865115_89865189_89865284_89865347_89865595_89865695_89865815_89865930_89866297_89866357_89868381
21350	chr18	+	3870	1	FSM	ENSMUSG00000024608.12	ENSMUST00000236441.2	987	1	0	-2883	0	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	20	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTAAGCTATTTTGGTT	NA	False	NA	-17	True	NA	NA	NA	60907736	60911606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60907700_60911600
21351	chr19	+	2541	13	NNC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	-1	71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	377.270239130167	3	81	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACATGGTAATAATTTT	214	False	NA	NA	False	NA	NA	NA	46064378	46072971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067685_46068341_46068525_46069751_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
21352	chr16	-	1962	18	ISM	ENSMUSG00000022789.16	ENSMUST00000115749.3	3893	20	-35	4096	-23	-2347	5prime_fragment	FALSE	canonical	3	44	junction_17	336.640835168751	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGTATTATTTAATATGT	NA	False	NA	NA	False	NA	NA	NA	16176432	16134197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176362
21353	chr16	-	1996	8	NIC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	3	-22	intron_retention	FALSE	canonical	0	0	junction_7	966.910543949129	368	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACATCCCCTTCTGTGTA	957	False	NA	NA	False	NA	NA	NA	11021192	11010855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_11011602_11012323_11012576_11014137_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
21354	chr15	+	2088	11	ISM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	-20	322	-20	-322	5prime_fragment	FALSE	canonical	3	1134	junction_3	90.3416293853504	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATGCTGTTTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85220425	85347091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480
21356	chr11	+	4025	13	NIC	ENSMUSG00000020464.16	novel	3368	27	NA	NA	3491	-3	intron_retention	FALSE	canonical	3	581	junction_10	28.0619354682143	2	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTATTTTTATATCTTA	NA	False	NA	NA	False	NA	NA	NA	29091677	29111677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29091767_29095428_29097365_29097443_29097534_29098277_29098332_29103231_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
21357	chr15	+	2734	16	NNC	ENSMUSG00000022394.15	novel	3368	17	NA	NA	-194	427	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	232.237770877655	1	66	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAACATTCCCTCTCCCT	NA	False	NA	NA	False	NA	NA	NA	81547895	81571815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566863_81568146_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571192
21358	chr7	-	3849	5	NNC	ENSMUSG00000048012.20	novel	1006	5	NA	NA	11	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.2741809737743	3	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCACTGGCTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	44397462	44380910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44384252_44387389_44387459_44388926_44389060_44391112_44391290_44397333
21362	chr7	-	3365	21	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-10	-3	intron_retention	FALSE	canonical	3	95	junction_6	22.7774010808959	8	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697729	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
21363	chr11	+	4727	14	Antisense	novelGene_ENSMUSG00002076008.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCCGGCCTGGGCGCCGA	NA	False	NA	NA	False	NA	NA	NA	104224338	104332615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_104226034_104226274_104226524_104227044_104227160_104227374_104227433_104228951_104229076_104233190_104233338_104234316_104234502_104241313_104241481_104247511_104247703_104248306_104248427_104259507_104259607_104269512_104269652_104314746_104316120_104332550
21364	chr2	-	3857	16	NNC	ENSMUSG00000027366.13	novel	5616	15	NA	NA	-4176	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.66923039003784	1	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAAATGAATTTGT	NA	False	NA	NA	False	NA	NA	NA	126769784	126732321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126733365_126734873_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755219_126755274_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668
21365	chr4	-	1996	5	NIC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	30	-5	intron_retention	FALSE	canonical	3	1694	junction_1	131.788419445716	16	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	29	False	NA	NA	False	NA	NA	NA	41098153	41092726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41093703_41093781_41094385_41094700_41094839_41095144_41095272_41098001
21366	chr1	-	3466	14	NNC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	5	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	37.9563748339135	3	60	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGCAACATTAATGTGG	975	False	NA	NA	False	NA	NA	NA	150268489	150237070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150259422_150260205_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
21367	chr15	-	4717	4	FSM	ENSMUSG00000022361.15	ENSMUST00000070143.13	4764	4	30	17	30	-17	multi-exon	FALSE	canonical	3	28	junction_2	5.18544972870135	62	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCTTTTTAAAACCATTG	NA	False	NA	NA	False	NA	NA	NA	57939835	57910717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_57912182_57915619_57918479_57932714_57932826_57939552
21368	chr12	+	2320	8	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	137	-1689	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1576.57646403172	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78909040	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78910007_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
21369	chr8	+	3094	12	FSM	ENSMUSG00000070002.8	ENSMUST00000093454.8	3072	12	-22	0	-22	0	multi-exon	FALSE	canonical	3	95	junction_2	19.7818683154445	371	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGTGGTTTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	70992315	71045508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
21371	chr3	+	3202	6	FSM	ENSMUSG00000015750.16	ENSMUST00000015894.12	2863	6	-37	-302	-37	302	multi-exon	FALSE	canonical	3	313	junction_4	15.0651916682132	646	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGGCTGAGAATGCTTT	NA	False	NA	NA	False	NA	NA	NA	95801243	95805902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
21373	chr15	+	2517	12	ISM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	85	1663	-7	931	5prime_fragment	FALSE	canonical	3	579	junction_9	64.8963572944017	23	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAATTAGGCTGCTGA	NA	False	NA	NA	False	NA	NA	NA	81900654	81922623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657
21374	chr1	-	2291	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	canonical	1	117	junction_9	2039.97149301349	1	74	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGTTACCTGTTCAAT	NA	False	NA	NA	False	NA	NA	NA	86287063	86278286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283910_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
21375	chr2	-	3115	6	NIC	ENSMUSG00000027496.16	novel	1862	9	NA	NA	-1	-2	intron_retention	FALSE	canonical	2	2	junction_5	503.832670635798	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGGAGTACGTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	172212427	172198117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172206417_172208841_172209092_172212392
21377	chr18	-	1943	14	NNC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1530.84856385071	2	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTAGTCTTTTCCTTATT	NA	False	NA	NA	False	NA	NA	NA	64649570	64633143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634863_64637430_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
21378	chr7	+	2837	3	NNC	ENSMUSG00000109511.2	novel	2414	2	NA	NA	32	1021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	65	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCTTGTTCAGGATTGT	402	False	NA	NA	False	NA	NA	NA	44465838	44481257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465903_44478052_44478351_44478782
21381	chr13	-	2840	4	FSM	ENSMUSG00000113623.2	ENSMUST00000221436.2	633	4	-10	-2197	-10	1649	multi-exon	FALSE	canonical	3	100	junction_1	23.5372045918796	1631	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTATATATTATTT	NA	False	NA	NA	False	NA	NA	NA	62564867	62548657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_62551194_62555228_62555290_62555482_62555610_62564751
21382	chr16	-	2954	13	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	504.884227653562	1	100	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCATAACTGTATCATTG	8113	False	NA	NA	False	NA	NA	NA	4867724	4831774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4837167_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854911_4865597_4865678_4867638
21383	chr12	+	2440	10	NIC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	0	-5	intron_retention	FALSE	canonical	3	1446	junction_1	313.390420331502	5	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCTTGAGGGAAGAGTTC	3973	False	NA	NA	False	NA	NA	NA	100076412	100089659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100087407_100089316
21384	chr9	-	1575	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5015.73746180103	47	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387666_78387917_78387971_78388920
21385	chr9	+	1758	9	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-150	intron_retention	FALSE	canonical	3	16882	junction_3	1296.80582948065	96654	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTTGTGTGACTCTTA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
21387	chr10	-	1723	10	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-10	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	700.117150690767	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725656	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93725535
21388	chr17	+	1431	4	FSM	ENSMUSG00000034165.17	ENSMUST00000182539.8	931	4	38	-538	38	-51	multi-exon	FALSE	canonical	3	145	junction_1	1891.51068373051	61	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGGGCTGGTGGCCCAT	NA	False	NA	NA	False	NA	NA	NA	47907030	47910557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47907141_47908344_47908505_47908927_47909065_47909533
21389	chr3	+	1938	8	NNC	ENSMUSG00000078578.10	novel	2504	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1082.26531131772	4	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGTTGTCATGAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	135144293	135172282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164603_135165785_135165842_135168710_135168805_135170955
21390	chr11	+	2296	13	NIC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	12	0	intron_retention	FALSE	canonical	3	682	junction_1	159.36930817723	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1436	False	NA	NA	False	NA	NA	NA	120675142	120679923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
21392	chr5	-	2870	1	NIC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	9946	-2504	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACCCAAACAACACACACA	NA	False	NA	NA	False	NA	NA	NA	148269593	148266723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_148266700_148269600
21393	chr17	-	1813	17	ISM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	115	1593	-2	58	5prime_fragment	FALSE	canonical	3	280	junction_14	46.0230495920251	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTCTGAGGCTGGCTGCT	NA	False	NA	NA	False	NA	NA	NA	24746797	24729128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
21394	chr10	+	2805	4	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	785.154903329415	1	112	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41395499	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399316_41404667
21395	chr3	+	2839	5	NIC	ENSMUSG00000005687.15	novel	1405	7	NA	NA	-13	-12	intron_retention	FALSE	canonical	3	101	junction_1	1575.1915756504	2	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGTTCTAAGCATTTTT	5010	False	NA	NA	False	NA	NA	NA	103079051	103086129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_103079357_103080549_103080662_103081655_103081818_103082934_103084736_103085670
21396	chr11	-	3631	5	NNC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	-15	-8	intron_retention	FALSE	canonical	3	13	junction_3	109.609249153527	8	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTGACTCTGCGTCATT	NA	False	NA	NA	False	NA	NA	NA	61385029	61379645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61380097_61380189_61380324_61380674_61382513_61383675_61384760_61384905
21397	chr5	+	1754	12	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1820	7183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCGGGACGTAGCCGGCCA	672	False	NA	NA	False	NA	NA	NA	138162858	138170091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165001_138166165_138166235_138166319_138166434_138166593_138166745_138167071_138167210_138167359_138167541_138167610_138167734_138167819_138167984_138169938
21398	chr19	+	3367	20	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	4138	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	285.806774701675	1	147	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	6055	False	NA	NA	False	NA	NA	NA	8879626	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879885_8880010_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
21399	chr4	-	3878	24	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	238	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	128.541123442574	1	135	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	87	False	NA	NA	False	NA	NA	NA	41124217	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120129_41121046_41121120_41121203_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123519_41123627_41123660_41124158
21400	chr12	-	1791	1	Antisense	novelGene_ENSMUSG00000054309.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGACAGGGTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	21350597	21348806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21348800_21350600
21401	chr15	-	2751	6	NNC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-5	484	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1645.44588485918	1	120	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTACTTCCCTAATTGTC	753	False	NA	NA	False	NA	NA	NA	36793768	36770529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772542_36775478_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
21402	chr12	-	1488	9	NIC	ENSMUSG00000021240.7	novel	2410	18	NA	NA	1232	2289	intron_retention	FALSE	canonical	3	177	junction_7	18.8310747170734	6	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGCCATTCTTCACTGA	NA	False	NA	NA	False	NA	NA	NA	84660929	84652684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678
21403	chr2	+	2464	2	Fusion	ENSMUSG00000045822.5_ENSMUSG00000017764.3	novel	2708	2	NA	NA	54	-6	multi-exon	FALSE	canonical	1	1	junction_1	0	5	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCACTCGTGTCTTGTCT	3117	False	NA	NA	False	NA	NA	NA	164647071	164668785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_164647352_164666601
21405	chr6	+	2354	9	NIC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	28	572	intron_retention	FALSE	canonical	3	2268	junction_5	107.840087050225	2202	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGCTTTTGCTGTACTG	565	False	NA	NA	False	NA	NA	NA	88061491	88080941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077964_88078956_88079203_88080346
21406	chr15	-	2529	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	-2	-36	-2	36	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	1012	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTGTCACTTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	76361479	76337152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
21407	chr15	+	1803	15	NNC	ENSMUSG00000097057.2	novel	4343	2	NA	NA	-2663	3680	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	34	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGACCAGCGCTGTCGTAA	2937	False	NA	NA	False	NA	NA	NA	77843210	77855006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_77843323_77843711_77843994_77844151_77844297_77845813_77845944_77846045_77846134_77846640_77846771_77847377_77847511_77848288_77848353_77849102_77849212_77850326_77850411_77850881_77850968_77851502_77851640_77852375_77852424_77852658_77852792_77854884
21408	chr18	-	2846	8	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	563.22152817157	6	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCTTTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	38472018	38460607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38462027_38463538_38463714_38465020_38465206_38465511_38466104_38466206_38466390_38468068_38468171_38471143_38471276_38471960
21409	chr15	-	1977	9	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	380	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.608934471385	324	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACCCTGCCAGCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	83056413	83037699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038881_83043043_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
21411	chr6	-	4029	7	NIC	ENSMUSG00000048930.13	novel	2848	9	NA	NA	-13	9	combination_of_known_junctions	FALSE	canonical	3	225	junction_6	62.8845944744993	5	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCACCCGCAAGTTTAGT	NA	False	NA	NA	False	NA	NA	NA	113354350	113343606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113352221_113352800_113353026_113354276
21412	chr7	-	2715	11	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.0170511013681	27	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9606	False	NA	NA	False	NA	NA	NA	3218929	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205486_3207817_3207926_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
21413	chr14	-	3235	17	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	7	junction_11	54.8665639870951	1	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAACTGTCTTGGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	123215706	123156387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182273_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215579
21414	chr11	-	2070	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	723.2799519473	5	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5214	False	NA	NA	False	NA	NA	NA	88846278	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835343_88837970_88838061_88843231_88843381_88846119
21415	chr11	-	3184	25	Antisense	novelGene_ENSMUSG00002075861.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGGGTGGGCAGGGTGAG	NA	False	NA	NA	False	NA	NA	NA	84801441	84771283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_84771335_84771611_84771700_84773409_84773551_84776024_84776163_84776493_84776643_84778876_84778992_84782899_84783033_84784147_84784218_84785372_84785477_84786091_84786192_84787948_84788037_84788373_84788545_84790200_84790277_84791020_84791142_84791297_84791412_84791665_84791851_84792179_84792328_84792923_84793038_84793984_84794053_84796366_84796467_84798055_84798228_84798334_84798459_84799040_84799132_84800079_84800378_84801216
21417	chr7	+	2582	16	Antisense	novelGene_ENSMUSG00000078762.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	27	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGCCCATCTATGACGTCA	NA	False	NA	NA	False	NA	NA	NA	30353142	30364406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30353484_30353597_30353728_30356373_30356503_30356585_30357343_30357926_30358090_30358276_30358415_30358491_30358554_30358715_30358837_30358959_30359025_30359520_30359601_30359682_30359756_30361054_30361216_30361294_30361413_30362522_30362552_30362646_30362710_30364254
21418	chr10	-	1536	9	Antisense	novelGene_ENSMUSG00000019823.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGAACCTCCGTACTCC	NA	False	NA	NA	False	NA	NA	NA	41357649	41352370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_41352534_41354003_41354309_41354421_41354632_41354958_41355063_41355319_41355490_41355608_41355768_41356277_41356380_41357127_41357390_41357588
21419	chr5	-	3528	9	NNC	ENSMUSG00000029512.12	novel	5213	28	NA	NA	-888	-3	intron_retention	FALSE	non_canonical	0	0	junction_7	372.118407734689	1	80	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGGTGTCAATTTCA	NA	False	NA	NA	False	NA	NA	NA	110938220	110932356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936739_110936813_110936924_110937212_110937402_110938077
21420	chr5	-	2164	10	NIC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	10	472	intron_retention	FALSE	canonical	3	1613	junction_6	128.157985064538	2081	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	NA	False	NA	NA	NA	117527100	117517209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_117517972_117518831_117518887_117519900_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
21421	chr15	-	2703	1	FSM	ENSMUSG00000065899.3	ENSMUST00000083965.3	132	1	-2286	-285	-2286	285	mono-exon	FALSE	NA	NA	NA	NA	NA	107	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGGTGTCTGTTTGCTTT	375	False	NA	NA	False	NA	NA	NA	34443354	34440651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34440700_34443400
21422	chr6	+	1782	13	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	4	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1718.76561609067	1	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5119	False	NA	NA	False	NA	NA	NA	85429004	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444047_85444104_85444142_85444560_85444768_85445034
21423	chr9	-	2721	4	Antisense	novelGene_ENSMUSG00000032044.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCTCCAGCACTCAGA	7292	False	NA	NA	False	NA	NA	NA	35187254	35182342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_35183922_35183995_35184140_35184758_35184860_35186357
21424	chr12	-	3219	20	FSM	ENSMUSG00000072919.5_ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	-21	-674	-21	669	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	395	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGATCTGCATTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	87313051	87284972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
21425	chr7	-	3338	27	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	33	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	285.04187640025	1	112	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGTGTGTTGTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	44198229	44182171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187103_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
21426	chr15	-	3048	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-6	1	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	175.453380955993	27	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAGACTTCTGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	79855326	79800012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79802252_79802477_79802678_79802953_79803129_79805572_79805640_79807672_79807739_79814786_79814831_79855069
21427	chr2	+	2230	8	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	1577	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	524.439525900299	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	3809	False	NA	NA	False	NA	NA	NA	26282515	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286016_26286172
21429	chr19	+	1386	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	108	-298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3000.53417877962	16	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTTCCTGTCCTGCCTC	951	False	NA	NA	False	NA	NA	NA	8944512	8955545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947279_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
21430	chr2	-	3550	16	NIC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	2	-29	intron_retention	FALSE	canonical	3	55	junction_14	84.0398318259463	1	105	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGTATCAATAAAATTAAT	NA	False	NA	NA	False	NA	NA	NA	155953853	155913795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
21432	chr13	-	1879	11	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-5182	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	572.409826959671	2	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCTGCAGCACAAGTATT	910	False	NA	NA	False	NA	NA	NA	74493057	74470881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472058_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969
21433	chr8	-	3677	23	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	2	-465	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	200.002706593256	1	141	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTGCAGTGCCTCTCTG	8151	False	NA	NA	False	NA	NA	NA	120285464	120235359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237117_120240617_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260055_120260212_120262013_120262117_120264865_120264934_120265580_120265677_120268337_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
21434	chr15	+	3627	7	NIC	ENSMUSG00000036167.17	novel	3351	9	NA	NA	12	403	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	44	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGTCTCCTCTCGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	93296242	93389794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
21435	chr10	-	1586	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-24	-871	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	598.112029639933	8	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8668	False	NA	NA	False	NA	NA	NA	128401880	128394507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395380_128395978_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
21436	chr5	-	5469	6	FSM	ENSMUSG00000015882.19	ENSMUST00000190036.7	5463	6	-6	0	-6	0	multi-exon	FALSE	canonical	3	25	junction_1	19.1562000407179	23	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTCAGATGTTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	46014815	45854525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_45859340_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
21438	chr6	+	754	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	248	-537	248	537	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGTGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37783268	37784022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37783300_37784000
21440	chr10	-	4667	32	NIC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-19	-7	combination_of_known_junctions	FALSE	canonical	3	132	junction_8	18.0258226152743	272	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTGCTGTGGCCTAC	NA	False	NA	NA	False	NA	NA	NA	79938551	79892832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
21441	chr9	+	1623	5	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	663.551194332434	5	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTGTATTCTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	108183634	108215132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208107_108213897
21442	chr8	+	2983	11	ISM	ENSMUSG00000002342.18	ENSMUST00000002413.15	3018	12	1897	0	-1	0	3prime_fragment	FALSE	canonical	3	184	junction_1	15.5935884260166	505	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGATCCTTATCTTTT	7763	False	NA	NA	False	NA	NA	NA	70626951	70636331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
21443	chr17	+	3002	2	FSM	ENSMUSG00000067722.5	ENSMUST00000088307.5	3030	2	22	6	22	-6	multi-exon	FALSE	canonical	3	314	junction_1	0	1196	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACCGTGTATGTCTCT	NA	False	NA	NA	False	NA	NA	NA	25403549	25406630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25403615_25403693
21444	chr8	+	1937	15	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	82	-360	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	761.002202388939	4	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGCCCATCAACCCTCAAG	NA	False	NA	NA	False	NA	NA	NA	75836333	75853956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839285_75842512_75842647_75844149_75844322_75845882_75845997_75847407_75847552_75847839_75847888_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851567_75852868_75852993_75853850
21445	chr6	-	1753	12	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2846.0788655782	541	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTGCACTGCTACAAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51437912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
21446	chr19	-	3395	7	NNC	ENSMUSG00000040451.19	novel	3262	6	NA	NA	30	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	88.4786540484326	80	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGTATGTGGCTATTAT	8049	False	NA	NA	False	NA	NA	NA	32188383	32100134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32176298_32176469_32188227
21447	chr1	+	3057	27	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	303.286007535567	1	97	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTCCTGCTTGCCGTTTC	3046	False	NA	NA	False	NA	NA	NA	171910377	171949891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916669_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171944800_171944864_171945581_171945660_171945819_171945889_171946407_171946530_171949611
21448	chr15	-	2442	10	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-72	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1048.22542576007	1	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283867	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249542_81255746_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276527_81283693
21449	chr9	+	2284	16	NIC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	-8	0	intron_retention	FALSE	canonical	3	461	junction_10	127.233643349548	24	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGGCTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	21914305	21925516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924232_21924311_21924463_21925207
21450	chr11	-	1356	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	54	390	54	-390	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGGCCCACTTGGACGC	1901	False	NA	NA	False	NA	NA	NA	59119042	59102629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
21454	chr18	+	1612	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-105	-152	-105	152	mono-exon	FALSE	NA	NA	NA	NA	NA	6	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	82356481	82358093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
21455	chr7	-	2392	17	NNC	ENSMUSG00000031078.16	novel	2913	17	NA	NA	4697	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	303.825299308665	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCCATTTACTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	144019785	143989479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143990086_143990540_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690
21456	chr19	-	1945	8	NIC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	22	12	intron_retention	FALSE	canonical	3	2610	junction_7	209.25270339365	2	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATGAGATTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	8691221	8684938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8687148_8689197_8689293_8690093_8690268_8690705
21458	chr7	+	1881	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	255	2356	-75	1096	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	NA	False	NA	NA	NA	83541462	83548384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
21459	chr5	+	1805	10	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1064.7410860143	3	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	705	False	NA	NA	False	NA	NA	NA	77099572	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114730_77114987
21460	chr2	+	3630	21	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	76.3959913869831	6	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAGTCTGAAGTACATGT	5001	False	NA	NA	False	NA	NA	NA	127267118	127278007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271479_127272449_127272875_127273199_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
21461	chr4	-	1700	5	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	22825	8	1546	-8	3prime_fragment	FALSE	canonical	3	810	junction_4	84.5469544099609	15	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122756879	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693
21462	chr17	+	2672	8	FSM	ENSMUSG00000002307.17	ENSMUST00000170075.9	2673	8	6	-5	6	-3	multi-exon	FALSE	canonical	0	0	junction_1	226.475389481542	105	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTTTCCTTTACTTTG	5731	False	NA	NA	False	NA	NA	NA	34128580	34134561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34128829_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
21463	chr5	-	2263	8	NNC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-9	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	469.730578445273	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCTGCGTCAGGTACT	NA	False	NA	NA	False	NA	NA	NA	100186763	100182582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100184055_100184339_100184511_100184805_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578_100186673_100186730
21464	chr15	+	3484	18	NNC	ENSMUSG00000022186.15	novel	3527	17	NA	NA	-131	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	85.236532285084	632	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCCTCTTATTTG	NA	False	NA	NA	False	NA	NA	NA	4056034	4184830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4171925_4172049_4172273_4172355_4177046_4177149_4183209
21466	chr11	+	3408	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	125	7	18	-7	multi-exon	FALSE	canonical	3	479	junction_6	89.534754270184	1	125	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGGACTAGGCTTCTTC	4581	False	NA	NA	False	NA	NA	NA	97690515	97729583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
21467	chr11	-	3199	18	FSM	ENSMUSG00000020918.15	ENSMUST00000153526.8	2946	18	-271	18	5	-18	multi-exon	FALSE	canonical	3	22	junction_12	124.621058832359	378	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTTTTTTTCCCCTGTG	6800	False	NA	NA	False	NA	NA	NA	100603270	100595589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601075_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
21468	chr2	-	2256	3	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-15	1009	combination_of_known_splicesites	FALSE	canonical	3	155	junction_2	266.5	772	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAAAACCATGTCATGAT	2322	False	NA	NA	False	NA	NA	NA	177270018	177259987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177262087_177263226_177263288_177269922
21469	chr5	+	1396	11	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1468	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	538.183249460628	5	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	NA	False	NA	NA	NA	21991748	22008785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008315_22008544
21471	chr2	+	3672	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-4	-299	at_least_one_novel_splicesite	FALSE	canonical	3	184	junction_1	171.663106759205	43	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTCAGCCTACACAGA	NA	False	NA	NA	False	NA	NA	NA	104389519	104401475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389830_104390068_104390321_104398205_104398836_104398995
21472	chr13	-	1834	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	-130	478	-18	-478	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	127	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAACGGTGTCCTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	34314467	34311208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
21473	chr1	-	4292	16	FSM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	59	4020	-8	1248	multi-exon	FALSE	canonical	2	51	junction_13	9.26258903091115	112	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTTTTCAAACCAT	1758	False	NA	NA	False	NA	NA	NA	156301842	156256114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250_156294369_156301717
21476	chr13	-	1890	7	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	13764	-90	intron_retention	FALSE	canonical	3	2035	junction_4	175.06062441972	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCTTTCTATCCCTG	NA	False	NA	NA	False	NA	NA	NA	97321039	97312928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97313098_97313304_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184
21477	chr14	+	1790	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-24	1174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3069.06141199835	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGGAAAAAAAAACTTGCT	NA	False	NA	NA	False	NA	NA	NA	63359938	63380486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373965_63375437_63375568_63375799_63375944_63376447_63376565_63379182_63379273_63379714
21478	chr6	-	3665	6	FSM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	11	619	0	-619	multi-exon	FALSE	canonical	3	165	junction_3	15.4012986465428	292	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTTTCTCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	86374125	86363606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895_86373103_86373954
21479	chr4	-	3748	2	ISM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	1272	8	1272	-8	3prime_fragment	FALSE	canonical	3	214	junction_1	0	207	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGACAATTTTCTGTGCAA	1235	False	NA	NA	False	NA	NA	NA	40268578	40259608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_40263082_40268303
21480	chr10	+	3147	1	Antisense	novelGene_ENSMUSG00000063953.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	128	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCCCTGTCTTAATC	NA	False	NA	NA	False	NA	NA	NA	35584741	35587888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_35584700_35587900
21482	chr4	-	2781	9	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	15	638	intron_retention	FALSE	canonical	1	3	junction_1	166.49174153693	32	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCCCCAGCCACCCTGG	9150	False	NA	NA	False	NA	NA	NA	155976168	155971697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155972725_155972979_155973626_155973890_155974054_155974125_155974364_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976028
21483	chr5	+	2570	13	NIC	ENSMUSG00000037313.17	novel	2669	15	NA	NA	-3	-17	intron_retention	FALSE	canonical	3	792	junction_6	80.5796276293759	2	73	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATCTCAAACTCAAAGTC	NA	False	NA	NA	False	NA	NA	NA	33815926	33829525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824512_33825306_33825398_33825477_33825580_33826005_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
21484	chr9	+	2405	13	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-2	-1	intron_retention	FALSE	non_canonical	0	0	junction_5	1040.85268196588	1	67	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAAAAGTGACAACTG	1146	False	NA	NA	False	NA	NA	NA	108437635	108442762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439450_108440116_108440535_108440619_108440711_108440797_108440891_108441111_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
21485	chr13	-	4336	15	NIC	ENSMUSG00000021451.17	novel	4415	15	NA	NA	-8	0	combination_of_known_junctions	TRUE	canonical	2	6	junction_14	50.4570943212839	165	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTGGGCCAGCCTTTGC	NA	False	NA	NA	False	NA	NA	NA	51908809	51855285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51908631
21486	chr11	-	2556	20	Antisense	novelGene_ENSMUSG00000098942.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.446593756538872	1	32	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAAAGCCACCCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	46031016	45946845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_45947038_45951749_45951836_45955839_45955913_45984693_45984770_46003566_46003776_46004448_46004514_46009244_46009317_46012244_46012414_46013919_46014003_46015832_46015985_46018076_46018249_46019610_46019699_46022445_46022643_46025250_46025359_46027069_46027289_46028190_46028268_46028365_46028476_46029663_46029800_46030516_46030603_46030830
21488	chr13	-	2835	1	NIC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-2018	805	mono-exon	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAAGAGGCTAGGTCTT	7765	False	NA	NA	False	NA	NA	NA	6641020	6638185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_6638200_6641000
21489	chr2	+	2183	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	54.8672007871936	1	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5129	False	NA	NA	False	NA	NA	NA	164339456	164350221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339668_164339913_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349527_164349750
21490	chr11	+	1551	8	Antisense	novelGene_ENSMUSG00000119662.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAACCAGATCAAGAATTA	NA	False	NA	NA	False	NA	NA	NA	69557764	69561099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69558444_69558520_69558600_69558846_69558938_69559021_69559159_69559229_69559373_69559467_69559586_69559907_69560076_69560963
21491	chr10	+	2997	9	FSM	ENSMUSG00000019864.15	ENSMUST00000054418.12	2981	9	-19	3	-19	-3	multi-exon	FALSE	canonical	3	128	junction_8	16.985287751463	233	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTGGTTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	43777783	43823855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
21493	chr6	-	3360	8	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	0	-4	intron_retention	FALSE	canonical	0	0	junction_7	287.559186454347	2	128	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAAACTGTGTCTATTA	NA	False	NA	NA	False	NA	NA	NA	72416539	72409786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414410_72416328
21494	chr1	+	1885	14	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	698.131750336856	1	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724146	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724430_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744824_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
21495	chr17	-	1907	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3122	7422	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGGAAAGCGGTAGGGAT	NA	False	NA	NA	False	NA	NA	NA	13143447	13135277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142104_13142274_13142415_13142580_13143145
21496	chr6	-	2801	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	116	255	2	-255	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	1	110	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGTGCAGAGTCCCCA	9211	False	NA	NA	False	NA	NA	NA	88495771	88480815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
21497	chr4	+	2866	10	NNC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	-5	intron_retention	FALSE	canonical	1	9	junction_3	76.6927491864634	252	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGAGTTGTTGAGGTCA	8303	False	NA	NA	False	NA	NA	NA	156194486	156211715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194631_156198345_156198459_156201152_156201306_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
21498	chr14	+	1706	9	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	20	1291	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2441.42554412376	7	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTGCAGTTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	63359930	63380603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376555_63379789
21499	chr4	+	2339	7	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	258	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	266.187120900567	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGCAGACTTCTCAGAT	5306	False	NA	NA	False	NA	NA	NA	89055616	89099301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090379_89090622_89097766
21501	chr17	-	1778	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3226	7371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTAACACGCCCTGCG	NA	False	NA	NA	False	NA	NA	NA	13143343	13135328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136783_13136937_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142104_13142297_13142416_13142573_13143138
21502	chr11	+	3742	9	NIC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	28	814	intron_retention	FALSE	canonical	3	1417	junction_7	122.713016322638	1	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACTTGGCTGTCACCGC	NA	False	NA	NA	False	NA	NA	NA	109541774	109558616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109555646_109556690_109556813_109557469_109557552_109558255
21504	chr5	+	2976	16	NNC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	72.9875484053426	1	96	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTACCAGAAGAGTCCCACA	1827	False	NA	NA	False	NA	NA	NA	120651168	120672085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_120651398_120656646_120656878_120657744_120657848_120657930_120657984_120658667_120658726_120658844_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
21506	chr14	+	1531	1	ISM	ENSMUSG00000021957.8	ENSMUST00000160189.2	3159	3	11571	118	1062	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTTCAAAACTACAAT	NA	False	NA	NA	False	NA	NA	NA	30282708	30284239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30282700_30284200
21507	chrX	-	2802	17	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-69	-56505	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	199.966784351177	2	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACCCTTGGGCTCTAC	NA	False	NA	NA	False	NA	NA	NA	59224518	59157823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941_59224048_59224496
21508	chr13	-	1697	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-55	-479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTAACGGTGTCCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	34314392	34311209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312239_34312299_34312515_34312854_34312966_34313228_34313338_34314159
21509	chr18	-	2187	8	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.375952558535	1725	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	NA	False	NA	NA	NA	38472026	38460602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38461507_38461586_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
21510	chr15	-	1484	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	86	-2	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	5253.7313089524	11	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	244	False	NA	NA	False	NA	NA	NA	98832233	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830400_98830572_98830722_98830853_98831077_98832213
21512	chr2	+	2211	2	ISM	ENSMUSG00000062647.17	ENSMUST00000143678.8	920	7	-199	6	-10	-6	intron_retention	FALSE	canonical	3	5167	junction_1	0	47	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800818	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_26801139_26801433
21513	chr2	+	2869	3	NNC	ENSMUSG00000045822.5	novel	2708	2	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	446	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGTTTGTGTTTTTTGAG	3065	False	NA	NA	False	NA	NA	NA	164647019	164664047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164647352_164656900_164657067_164661676
21514	chr16	-	4777	13	NIC	ENSMUSG00000039738.17	novel	5706	15	NA	NA	-5	-2478	combination_of_known_junctions	FALSE	canonical	3	32	junction_9	9.20446751432272	1	107	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGGTGCTGAAGAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	3821621	3799474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_3799552_3802854_3805041_3805778_3805946_3806836_3806984_3808094_3808181_3808566_3808781_3809335_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819543_3821595
21516	chr11	-	2544	11	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	195.470816236082	4	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCATGAGCTGTGTTCCGTG	7783	False	NA	NA	False	NA	NA	NA	113456568	113135683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113136826_113136944_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
21518	chr15	-	1548	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4701.41214822738	6	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGTTTCTGGATACTT	160	False	NA	NA	False	NA	NA	NA	98832317	98829308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829517_98829579_98830444_98830572_98830722_98830853_98831077_98832213
21519	chr15	+	1489	10	NNC	ENSMUSG00000023010.16	novel	871	11	NA	NA	0	-119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	589.988888784262	1	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCAGCTCAGGCTGCGTT	NA	False	NA	NA	False	NA	NA	NA	99290866	99307811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99307095
21520	chr18	+	1316	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	178	-139	178	139	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGCTTTAAGAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82356764	82358080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356800_82358100
21522	chr17	+	1498	4	NIC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	304	-2	intron_retention	FALSE	canonical	3	4113	junction_2	144.430683105157	10	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3340	False	NA	NA	False	NA	NA	NA	35817218	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35817381_35819999_35820121_35820304_35821037_35821184
21523	chr8	-	5040	11	NNC	ENSMUSG00000004319.16	novel	5518	12	NA	NA	-8	11	intron_retention	FALSE	non_canonical	0	0	junction_3	74.8889845037306	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTGACTTTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	61436286	61364918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_61366210_61372373_61372591_61375823_61376223_61380263_61380453_61382104_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
21524	chr13	-	1524	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	8	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311611_34311795_34312515_34312854_34312966_34313228_34313338_34314159
21525	chr5	-	3644	17	NNC	ENSMUSG00000042508.17	novel	3926	18	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	104.753803630226	1	124	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTATTTGTCTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	9211749	9168890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170473_9171072_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180376_9180491_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201803_9201919_9211613
21527	chr16	+	1902	9	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-20	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	293.410095898215	28	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	38383202	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402370_38405582_38405881_38406582_38406771_38408544_38408666_38411273
21528	chr14	+	3390	10	NNC	ENSMUSG00000056234.16	novel	4065	10	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	251.512952811776	1	125	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTTGTGTTTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	31881888	31901205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31881968_31892704_31892860_31894264_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899335_31899779
21529	chr5	+	4169	5	FSM	ENSMUSG00000039917.11	ENSMUST00000136748.6	4363	5	49	145	-1	-73	multi-exon	FALSE	canonical	3	43	junction_1	101.030626544628	235	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGGCCCTGCCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	135661556	135675157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135661773_135663957_135664078_135664848_135665257_135667943_135668095_135671883
21530	chr11	+	4194	20	NNC	ENSMUSG00000017119.21	novel	4339	23	NA	NA	1	1954	intron_retention	FALSE	non_canonical	0	0	junction_1	77.4518347336014	1	77	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCATAAAAAGGTACAAATGT	979	False	NA	NA	False	NA	NA	NA	101443684	101469411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444815_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451282_101455438_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019
21531	chr5	+	1709	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	1142.51473442024	2	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	757	False	NA	NA	False	NA	NA	NA	77099624	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112461_77114628
21533	chr6	-	2342	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	32	-60	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1180.44491542262	1	96	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTGACAGATACTATA	8517	False	NA	NA	False	NA	NA	NA	145021878	144944943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945021_144945142_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
21534	chr4	+	2803	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	-225	22	-225	-22	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCAACTGCAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	130640210	130663430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
21535	chr8	-	2858	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	19	15	-7	-15	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	1407	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCATGACAAACATTCAG	NA	False	NA	NA	False	NA	NA	NA	73324913	73319046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
21536	chr10	-	6894	30	NNC	ENSMUSG00000090070.2	novel	471	2	NA	NA	-2295	62788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	82	22	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCATGCGCGCTGCACGCTG	NA	False	NA	NA	False	NA	NA	NA	11091018	11025235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_11025329_11027354_11028011_11030400_11030531_11032761_11032980_11035255_11035338_11036205_11036360_11037860_11037972_11038552_11038805_11040086_11040737_11042226_11042482_11043577_11043655_11045720_11045885_11045988_11046246_11047614_11047737_11054475_11054565_11057253_11057347_11059515_11059624_11061061_11061207_11062124_11062296_11062583_11062650_11063683_11063915_11065378_11065517_11066727_11066830_11068227_11068299_11069921_11070111_11080921_11081017_11082011_11082097_11082837_11083020_11088065_11088145_11089189
21537	chr5	+	2770	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	374.982999614649	1319	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478623	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486299_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
21538	chr16	+	2885	11	Antisense	novelGene_ENSMUSG00000034064.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	104	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCCACCCGCACGCCG	NA	False	NA	NA	False	NA	NA	NA	38345503	38370546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_38347143_38347937_38347995_38349805_38349975_38352145_38352207_38355087_38355186_38358267_38358327_38363197_38363322_38366110_38366242_38368796_38368946_38369702_38369999_38370444
21539	chr18	+	2804	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	49	12	-2	-12	multi-exon	FALSE	canonical	3	1498	junction_1	106	1	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAGAGAAATATCTAAATG	NA	False	NA	NA	False	NA	NA	NA	46730819	46743266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
21541	chr7	+	1107	3	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	709	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATCGCTGGGTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	110671144	110673409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673243
21542	chr7	+	3096	2	Genic_Genomic	ENSMUSG00000077886.3_ENSMUSG00000077815.3_ENSMUSG00000077903.3	novel	84	1	NA	NA	-790	174	multi-exon	FALSE	non_canonical	0	0	junction_1	0	646	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGCTTTCTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	3266509	3269689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_3268627_3268710
21544	chr16	-	1817	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-2	107	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1308.00241254536	1	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTATGGCCGTCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	87292749	87280768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285823_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
21545	chr5	+	2020	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-145	-11	intron_retention	FALSE	non_canonical	0	0	junction_9	1300.64428478949	1	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTATAACAATATATTCTC	611	False	NA	NA	False	NA	NA	NA	77099478	77115341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114796_77114918
21546	chr14	+	4450	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	67	25	67	-25	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	1	190	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAAATGTATTTTCGT	9697	False	NA	NA	False	NA	NA	NA	47535792	47560527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
21548	chr19	+	1354	3	ISM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	-12	2732	-12	-2525	intron_retention	FALSE	canonical	3	1186	junction_1	132.5	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGCTGGCCTCAAACTTG	5934	False	NA	NA	False	NA	NA	NA	8848944	8850495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8849121_8849222_8849277_8849371
21550	chr11	-	3069	4	NNC	ENSMUSG00000020303.3	novel	3940	4	NA	NA	-877	91	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	70.2107937254348	12	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGCTCCTTGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	31320951	31307894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_31310529_31315331_31315544_31317725_31317869_31320871
21551	chrX	+	4373	34	NNC	ENSMUSG00000031295.14	novel	4341	33	NA	NA	16	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_33	20.2755580756751	40	46	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAATCATGGTATAAGCCT	NA	False	NA	NA	False	NA	NA	NA	159285476	159381862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934_159374026_159381463
21553	chr5	-	2330	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	8	6	0	-2	multi-exon	FALSE	canonical	3	64	junction_7	200.336700053759	1025	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAGTCCATTGTATGCT	4354	False	NA	NA	False	NA	NA	NA	123887444	123866494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
21554	chr14	-	4802	20	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	18427	102045	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	38	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCACAGGCGCCCCGCCC	NA	False	NA	92	True	NA	NA	NA	21083718	20979464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20979756_21017604_21017677_21032641_21032791_21033433_21033541_21035690_21035816_21037023_21037184_21045076_21045169_21045910_21046059_21051196_21051351_21053160_21053339_21057182_21057372_21058927_21059126_21060102_21060233_21064976_21065127_21069345_21069426_21072175_21072196_21074173_21074358_21079241_21079451_21079852_21079951_21081650
21555	chr9	+	2122	10	NIC	ENSMUSG00000010048.11	novel	2054	11	NA	NA	-8	-12	intron_retention	FALSE	canonical	3	631	junction_9	38.3434769187957	714	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTAGCCCCCTGTGGCCT	NA	False	NA	NA	False	NA	NA	NA	107464916	107470225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469571_107469673
21556	chr5	+	1692	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	35	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1064.7410860143	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATATATTCTCGCTGTG	791	False	NA	NA	False	NA	NA	NA	77099658	77115347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114944_77115223
21557	chr6	+	2517	15	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	19	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	521.273127515114	1	49	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTAGGAAGCCTATCTTC	NA	False	NA	NA	False	NA	NA	NA	71808335	71854359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300_71851911_71854232
21558	chr3	-	5266	14	FSM	ENSMUSG00000039735.17	ENSMUST00000162409.8	5198	14	-67	-1	-67	1	multi-exon	FALSE	canonical	3	68	junction_7	9.36820759854666	232	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGATGTGTACTTATCT	NA	False	NA	NA	False	NA	NA	NA	122413431	122332372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_122335933_122338192_122338342_122339948_122340044_122340591_122340725_122342804_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413178
21560	chr2	-	2399	10	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAACCAGAGGCGGGGCG	NA	False	NA	NA	False	NA	NA	NA	152122359	152068761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068908_152092317_152092401_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118954_152120887
21561	chr14	-	2595	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	-40	-1254	-2	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	1	106	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGAAGCTGGTGTGT	8744	False	NA	NA	False	NA	NA	NA	52341466	52311001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
21562	chr19	+	1853	13	Antisense	novelGene_ENSMUSG00000024966.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCATAGGCCTTCTGGT	1851	False	NA	NA	False	NA	NA	NA	6998073	7012902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_6998540_6999017_6999187_6999389_6999499_6999639_6999674_7002675_7002807_7003658_7003756_7005994_7006117_7006269_7006373_7006475_7006601_7009846_7010017_7011529_7011675_7012016_7012155_7012858
21563	chr11	-	2368	18	NNC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.2181954562806	9	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3647	False	NA	NA	False	NA	NA	NA	54846883	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802109_54802261_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
21564	chr3	+	2787	5	NNC	ENSMUSG00000046722.15	novel	2805	5	NA	NA	-739	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	177.186871692008	7	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGTTTCAGAGTAATCACTA	924	False	NA	NA	False	NA	NA	NA	95138858	95143724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95138971_95139095_95139404_95139859_95139971_95140798_95140891_95141560
21565	chr7	-	1481	13	NNC	ENSMUSG00000038644.15	novel	3302	26	NA	NA	38	-1421	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	350.250465936719	3	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCCGTGTACTGCCTG	NA	False	NA	NA	False	NA	NA	NA	44198224	44188363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191169_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
21567	chr1	-	4078	11	Antisense	novelGene_ENSMUSG00000026349.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCGCCCGCGCCCTGAG	47	False	NA	NA	False	NA	NA	NA	127732907	127701955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127702128_127702849_127702918_127719339_127719471_127721094_127721155_127722990_127723053_127725367_127725457_127725575_127725930_127727129_127727299_127729351_127729413_127729897_127731028_127731125
21568	chr19	-	3784	7	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	2610	4	NA	NA	14	0	multi-exon	TRUE	canonical	2	3	junction_1	132.81534800868	2	66	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTCTTGGGTGAC	7828	False	NA	NA	False	NA	NA	NA	4861599	4834320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4834809_4835463_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4852578_4854044_4861199
21569	chr8	+	2974	24	NNC	ENSMUSG00000031930.12	novel	2098	8	NA	NA	6850	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	143.049887526559	223	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	108169897	108283845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108170017_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
21570	chr2	+	3076	21	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	-15	intron_retention	FALSE	canonical	0	0	junction_14	119.141260695025	2	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACTAATTCAGAATAGTT	NA	False	NA	NA	False	NA	NA	NA	130266273	130285639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283616_130283713_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
21571	chr12	+	3784	1	FSM	ENSMUSG00000113600.2	ENSMUST00000223510.2	680	1	-2683	-421	-2683	421	mono-exon	FALSE	NA	NA	NA	NA	NA	78	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAACAGCAATTCTCAA	7903	False	NA	NA	False	NA	NA	NA	69167191	69170975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_69167200_69171000
21572	chr6	+	1130	1	NIC	ENSMUSG00000067338.7	novel	1775	5	NA	NA	4591	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTTGCTTCCCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	145566073	145567203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_145566100_145567200
21573	chr4	+	4465	13	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	4374	-29	intron_retention	FALSE	canonical	3	6	junction_3	100.494886547636	1	104	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAATACAGTAAAAGCTGA	4399	False	NA	NA	False	NA	NA	NA	11563345	11615776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11563478_11569820_11569933_11578633_11578714_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11612439_11615442
21574	chr4	-	3863	6	NNC	ENSMUSG00000028907.8	novel	4008	6	NA	NA	-22	-15	intron_retention	FALSE	non_canonical	0	0	junction_2	608.117291318048	2	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTTGGTCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	124587349	124572604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_124572780_124573494_124575644_124575884_124577142_124577545_124577649_124579881_124579944_124587232
21576	chr3	+	3583	23	NNC	ENSMUSG00000025437.16	novel	3886	24	NA	NA	-1	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	172.011489381782	4	69	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATGTTGAATTTATTTG	NA	False	NA	NA	False	NA	NA	NA	152052150	152098975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085258_152086147_152086278_152087351_152087522_152088547_152088632_152089752_152089862_152095377_152095485_152098061
21577	chr15	-	1593	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	142	8	15	-8	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	22	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTTTGTTTCTGGA	173	False	NA	NA	False	NA	NA	NA	98832304	98829313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
21579	chr9	-	2685	18	NIC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_10	412.623583249052	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64080190	64044425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054221_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
21580	chr14	-	3515	11	NNC	ENSMUSG00000022003.8	novel	3588	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.9172554765658	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGGCTTACAGTCATT	NA	False	NA	NA	False	NA	NA	NA	76024445	75997556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_75999321_75999361_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435_76014567_76024364
21581	chr4	+	3598	18	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.235294117647059	1	182	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGAAGGGAGCCCAGCGC	NA	False	NA	NA	False	NA	NA	NA	135047900	135080498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049820_135051232_135051418_135052127_135052589_135054399_135054535_135056314_135056366_135056693_135056831_135059034_135059122_135059471_135059550_135065114_135065392_135067814_135067934_135068157_135068349_135069680_135069885_135071174_135071284_135071803_135071981_135074045_135074163_135074420_135074515_135080406
21582	chr2	-	3866	21	NNC	ENSMUSG00000006800.15	novel	4580	21	NA	NA	-2709	-2	at_least_one_novel_splicesite	FALSE	canonical	2	31	junction_20	197.544931597852	734	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTATCTTGGGACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	166000292	165915835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_166000018
21583	chrX	+	1222	1	Intergenic	novelGene_3959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAGAGCACTTGCTAG	NA	False	NA	NA	False	NA	NA	NA	73302924	73304146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_73302900_73304100
21584	chrX	+	1984	11	ISM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	28	28538	28	-2056	5prime_fragment	FALSE	canonical	3	535	junction_3	118.799031982588	1	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTATGCACCCTCCCCCC	NA	False	NA	NA	False	NA	NA	NA	150799451	150817152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975
21585	chr2	-	1126	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	53	-179	53	179	mono-exon	FALSE	NA	NA	NA	NA	NA	6	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824568	28823442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824600
21586	chr4	-	1623	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	-2	33	-2	-33	multi-exon	FALSE	canonical	3	236	junction_2	17	177	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTACTATAATAAAAATGTG	-2	True	NA	NA	False	NA	NA	NA	59783840	59774120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_59775550_59782253_59782335_59783727
21587	chr6	-	2517	9	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	0	-279	intron_retention	FALSE	canonical	0	0	junction_8	271.304689187268	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAAGGTGTCCTACAGA	NA	False	NA	NA	False	NA	NA	NA	72416539	72410061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414427_72416328
21589	chr10	+	4246	19	Antisense	novelGene_ENSMUSG00000112875.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	123	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGGGCACTACCCGCGCGG	NA	False	NA	NA	False	NA	NA	NA	61155438	61219136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_61157019_61158999_61159158_61174976_61175122_61176713_61177131_61178096_61178280_61178571_61178724_61178812_61178939_61179409_61179533_61179880_61179976_61182533_61182642_61182813_61182909_61183196_61183349_61184083_61184165_61184378_61184474_61185919_61186084_61186673_61186854_61188710_61188813_61191590_61191822_61219077
21590	chr5	+	1841	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	-9	-3	-9	3	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	3671	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	NA	False	NA	NA	False	NA	NA	NA	143389583	143407659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
21593	chr5	-	2036	14	Antisense	novelGene_ENSMUSG00000093413.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	56	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCGAGCCGCGCTGATG	3869	False	NA	NA	False	NA	NA	NA	129875197	129864590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129864640_129865297_129865360_129866114_129866249_129866877_129867053_129867645_129867766_129868554_129868644_129868845_129869005_129869083_129869165_129870698_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
21594	chr2	+	3129	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	25	0	25	0	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	1147	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	NA	NA	NA	120439888	120452041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
21595	chr2	+	2256	11	NIC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	-12	-441	intron_retention	FALSE	canonical	3	937	junction_7	59.2352091243038	46	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164675980	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164676352_164676617_164676845_164677075_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
21596	chr2	-	2791	13	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	82	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCAACCAGAGGCGGGGC	NA	False	NA	NA	False	NA	NA	NA	152122354	152068762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068909_152092317_152092530_152096128_152096238_152099288_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118950_152120884
21597	chr11	+	2242	22	NNC	ENSMUSG00000059439.16	novel	3724	27	NA	NA	0	-19047	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	28.8800003768821	1	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	3478	False	NA	NA	False	NA	NA	NA	85243992	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386769_85400492_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
21598	chr19	-	2012	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	152	453	23	-1	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCATTGCCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	15902271	15882494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
21599	chrX	-	3203	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	-43	385	-43	-385	multi-exon	FALSE	canonical	3	105	junction_1	4	259	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTATGGAGGCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	50106938	50093173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_50095628_50103847_50104161_50106502
21600	chr5	+	2040	10	NNC	ENSMUSG00000079562.8	novel	2193	9	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	180.928469598101	10	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTGAGGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	33492919	33530638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610_33530272_33530355
21601	chr3	+	3108	16	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_15	123.59097414006	26	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	NA	NA	NA	95467000	95494907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467035_95467121_95467381_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95493210
21602	chr9	-	3104	12	NIC	ENSMUSG00000032386.16	novel	1999	13	NA	NA	73	-5	combination_of_known_splicesites	FALSE	canonical	1	2	junction_9	60.6986867939694	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGAAGGGGTTGGAAGT	NA	False	NA	NA	False	NA	NA	NA	65792264	65739045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65786356_65786491_65788172_65788343_65792209
21603	chrX	-	2356	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	49	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800257	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766424_149768875_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
21604	chr5	+	2752	12	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-2	568	intron_retention	FALSE	canonical	3	859	junction_6	71.0165851889601	21	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTCCTGTCATGGTTTG	NA	False	NA	NA	False	NA	NA	NA	31652108	31668771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
21605	chr14	+	2459	16	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	-34	-276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	236.89769005956	2	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTTCATTGTATCACTC	NA	False	NA	NA	False	NA	NA	NA	122344515	122396740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122396194
21606	chr1	-	2768	17	NNC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	6	8	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_16	101.065495471996	299	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTGTTTTCCAAGCAT	NA	False	NA	NA	False	NA	NA	NA	160898194	160869060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897489
21607	chr18	+	3262	8	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	25	-138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	614.24445044132	2	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAATCATAAGGATATTTT	NA	False	NA	NA	False	NA	NA	NA	67908069	67928419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908224_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
21608	chr6	-	2365	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	160	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1640.75356162953	1	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGTTGGGAGATAAACTC	8645	False	NA	NA	False	NA	NA	NA	145021750	144944895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953471_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993024_144993090_145021614
21609	chr6	-	2255	2	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-25	2172	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2143	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGGCTGGAAAAATGGC	NA	False	NA	NA	False	NA	NA	NA	48502049	48499315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_48500380_48500858
21610	chr2	-	2619	18	NNC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	20	-12	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_17	110.405669078657	99	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGGCAAGTGTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	126975854	126945758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969617_126975768
21613	chr6	-	2710	12	NNC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	110.56735727993	3	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120334325	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311529_120311879_120315029_120315087_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
21615	chr13	-	3038	14	NNC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	-12	-3	intron_retention	FALSE	non_canonical	0	0	junction_9	195.94685911653	3	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCAGTTCTTCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	55684346	55678231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682675_55682848_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
21616	chr6	-	1866	9	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4132.66496759355	6	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8919	False	NA	NA	False	NA	NA	NA	122719475	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122704906_122706347_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712562_122716786_122716953_122717346_122717440_122719334
21617	chr7	+	3300	23	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	-3	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	51.9463526507782	8	41	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTGAGTTGAGACTGAG	540	False	NA	NA	False	NA	NA	NA	110628198	110655401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633422_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651575_110655323
21618	chr11	+	983	2	Genic_Genomic	ENSMUSG00000081766.4	novel	346	1	NA	NA	-1812	405	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAATCTTCCTATTTAT	NA	False	NA	NA	False	NA	NA	NA	88861670	88864233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_88861846_88863425
21619	chr10	+	1487	10	Antisense	novelGene_ENSMUSG00000019822.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGAATCTCGGGTGGAC	NA	False	NA	NA	False	NA	NA	NA	41363179	41366233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_41363578_41363666_41363821_41363987_41364093_41364171_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365345_41365456_41365556_41365977
21620	chr5	+	3154	2	Antisense	novelGene_ENSMUSG00000047215.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	71	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGTCTTTCGTCATCACG	3381	False	NA	NA	False	NA	NA	NA	65545334	65548742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_65547827_65548080
21621	chr15	-	1967	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	390	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	310	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056403	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038324_83038387_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
21622	chr1	+	2143	16	Antisense	novelGene_ENSMUSG00000026356.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	56	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCGCCCTCCCAGCCCGG	NA	False	NA	NA	False	NA	NA	NA	128291443	128345038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_128292065_128294435_128294507_128294657_128294771_128296104_128296183_128297229_128297273_128299876_128300026_128301675_128301824_128303916_128304050_128306502_128306617_128314854_128314916_128316825_128316937_128319007_128319119_128333109_128333210_128341400_128341492_128343099_128343148_128344887
21624	chr3	-	2181	9	FSM	ENSMUSG00000040774.16	ENSMUST00000068301.11	2814	9	8	625	8	98	multi-exon	FALSE	canonical	3	190	junction_8	25.7924407530579	923	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATATGGTCAGCCGTGTC	NA	False	NA	NA	False	NA	NA	NA	106455110	106410200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454995
21625	chr6	+	3603	2	NNC	ENSMUSG00000107310.2	novel	788	2	NA	NA	-145	456	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	83	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCAATGCTGTCTCACTG	NA	False	NA	NA	False	NA	NA	NA	36933591	36937279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_36935468_36935552
21626	chr9	+	2532	12	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	3	0	intron_retention	FALSE	canonical	3	9	junction_11	198.902567617813	91	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9109	False	NA	NA	False	NA	NA	NA	15217546	15228266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225329_15225526_15225561_15226397_15226428_15226678_15226773_15228184
21627	chr3	+	1939	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	689.11542647507	3	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3824	False	NA	NA	False	NA	NA	NA	88204442	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216485_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
21628	chr17	-	1089	8	NNC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	-4	-101	at_least_one_novel_splicesite	FALSE	canonical	2	76	junction_7	2154.26616133605	9	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGATCCAAAGTTGGCCA	4743	False	NA	NA	False	NA	NA	NA	25492361	25480995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491640_25492294
21629	chr5	-	3409	1	NIC	ENSMUSG00000028959.15	novel	3056	10	NA	NA	10	-148	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	85	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGAATCTGACTGTACCT	NA	False	NA	NA	False	NA	NA	NA	24650174	24646765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24646800_24650200
21631	chr19	-	3126	18	FSM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	64	46	2	0	multi-exon	FALSE	canonical	3	363	junction_14	47.6890156590894	350	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCTGTGGATATTGTGA	NA	False	NA	NA	False	NA	NA	NA	9876851	9849705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
21632	chr3	+	1892	10	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-29	662	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	308.989192347652	9	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	105866794	105875505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105866985_105867347_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
21633	chr4	-	2664	19	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	315	-6	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_18	181.384796618803	1	72	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCATTGGTGTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	120427158	120397070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427067
21635	chr9	+	3468	9	FSM	ENSMUSG00000020257.14	ENSMUST00000020490.13	3747	9	270	9	-12	-9	multi-exon	FALSE	canonical	3	208	junction_3	24.1958157539687	373	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACAGTCTCTTCCATTGA	NA	False	NA	NA	False	NA	NA	NA	106048396	106068329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106048579_106053811_106053910_106057764_106057832_106060814_106060915_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
21636	chr4	+	5511	13	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	5	-12	intron_retention	FALSE	canonical	2	13	junction_6	90.8024029907187	2	200	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTTTGCTTTCTTGT	7	True	NA	NA	False	NA	NA	NA	11558953	11615793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599680_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11612439_11612617_11612819_11615442
21637	chr9	+	3805	6	FSM	ENSMUSG00000042787.16	ENSMUST00000035094.14	3832	6	20	7	3	-7	multi-exon	FALSE	canonical	3	21	junction_1	23.8109218637162	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGACCGGTGATTGGC	NA	False	NA	NA	False	NA	NA	NA	119274028	119294576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119274217_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
21638	chr5	+	3277	31	ISM	ENSMUSG00000037426.19	ENSMUST00000049780.13	3569	33	16	9531	3	1737	5prime_fragment	FALSE	canonical	3	86	junction_1	24.2249641669268	41	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGCCTGCTTAAAAAGAG	2029	False	NA	NA	False	NA	NA	NA	33021080	33104113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_33021166_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977
21639	chr12	+	2287	2	Antisense	novelGene_ENSMUSG00000001270.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTCGCTGCTCCCTGA	8225	False	NA	NA	False	NA	NA	NA	111636277	111638734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_111637479_111637648
21640	chr2	-	4030	19	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	1	0	intron_retention	FALSE	canonical	3	183	junction_18	32.0378345008862	2	89	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCAGTACTGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	11782360	11747383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
21641	chr19	-	4262	9	ISM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	117	0	117	0	3prime_fragment	FALSE	canonical	3	154	junction_5	17.1518949390439	123	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCATATTTGGATGGG	8282	False	NA	NA	False	NA	NA	NA	56536367	56517600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068
21642	chr6	-	1436	6	ISM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	4316	0	3292	0	3prime_fragment	FALSE	canonical	3	5474	junction_2	140.482881519422	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	2383	False	NA	NA	False	NA	NA	NA	128411324	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267
21643	chr17	-	1544	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	71	1034	-18	650	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGATCCCTCAGCTTT	NA	False	NA	NA	False	NA	NA	NA	36149127	36145846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
21644	chr4	+	2398	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	-45	5	3	-5	multi-exon	FALSE	canonical	3	446	junction_1	0	956	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCACTTTTCTGGTTTTTT	-34	True	NA	NA	False	NA	NA	NA	24898085	24903500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_24898677_24901693
21645	chr1	-	3104	13	NIC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	0	-17	combination_of_known_junctions	FALSE	canonical	2	4	junction_12	45.7446870017589	174	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATGGACTATAAAATTT	6052	False	NA	NA	False	NA	NA	NA	53336177	53228362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53335977
21647	chr19	+	2587	13	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	-7	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	389.741679050225	2	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCAGTGTGGTTTTCCGGG	827	False	NA	NA	False	NA	NA	NA	6413944	6427213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422110_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
21648	chr14	-	3264	14	ISM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	359	12	27	-12	3prime_fragment	FALSE	canonical	3	310	junction_11	30.5207272668822	41	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATTTAATGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	45767216	45696263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881
21649	chr8	+	4627	32	FSM	ENSMUSG00000036879.16	ENSMUST00000053771.14	5351	32	-11	735	0	0	multi-exon	FALSE	canonical	3	66	junction_1	17.4946996581545	120	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCAATGTCTGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	86567619	86787270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_86567733_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
21650	chr5	+	2147	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	416	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1199.66729115512	1	83	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAAGCTACTGGATCAT	NA	False	NA	NA	False	NA	NA	NA	129864477	129875191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867748_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
21651	chr10	-	1550	9	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	2341	194	-1265	-178	3prime_fragment	FALSE	canonical	3	1924	junction_2	86.9107839971542	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127355914	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839
21654	chr3	+	2493	5	ISM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	227	-1425	0	-652	3prime_fragment	FALSE	canonical	3	47	junction_4	323.613967560116	20	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGAATGTAAAATGCCA	NA	False	NA	NA	False	NA	NA	NA	102965909	102973140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971549
21655	chr16	-	4093	7	NNC	ENSMUSG00000022519.15	novel	5000	7	NA	NA	41	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.8734358477712	44	67	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTTGGCCTTCTTGATT	NA	False	NA	NA	False	NA	NA	NA	4359637	4298076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311839_4334974_4335259_4359543
21656	chr4	+	1872	8	Fusion	ENSMUSG00000084350.2_ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	2498	5	NA	NA	-13	180	multi-exon	FALSE	non_canonical	0	0	junction_1	26.5944600645031	1	70	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTATTTCCCATTTATTA	NA	False	NA	NA	False	NA	NA	NA	145311759	145556692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145312571_145312699_145399301_145399395_145510590_145510634_145552678_145552806_145554256_145554395_145554892_145555695_145556473
21657	chr12	-	1824	5	NNC	ENSMUSG00000021266.17	novel	2764	10	NA	NA	7553	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	832.10726472012	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTCACTGTCTGACCAA	2215	False	NA	NA	False	NA	NA	NA	108833654	108825958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826955_108827004_108827353_108828728_108828870_108831938_108832226_108833602
21658	chr11	-	3257	15	NIC	ENSMUSG00000018921.12	novel	3435	17	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_14	167.543354121266	218	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGTGCTGCTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	70300847	70283708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70300589
21659	chrX	-	1894	13	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_9	527.194059515933	4	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	100128978	100122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126471_100126753_100126913_100127476_100127531_100127782_100127881_100128877
21660	chr11	-	812	1	NIC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-224	-1007	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTTGTCCCAGGATTG	NA	False	NA	NA	False	NA	NA	NA	5826988	5826176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_5826200_5827000
21662	chr8	-	2753	18	NIC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	374	junction_11	44.6890835311177	615	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATCCCGGTCTTGACCTC	1018	False	NA	NA	False	NA	NA	NA	3671309	3660090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
21664	chr15	-	3028	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	16	0	16	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	1	123	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	38300934	38294656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
21665	chr2	+	1325	4	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-32	552	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	125.429927316676	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACCCATGAATGCATTCA	NA	False	NA	NA	False	NA	NA	NA	176766080	176779692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176766152_176776035_176776163_176776368_176777410_176779606
21667	chr10	-	2813	21	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	-22	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	684.489771654771	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	127147569	127132094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132485_127132741_127132809_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141614_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146174_127146325_127146404_127147389
21668	chr4	+	1818	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	-5	0	-2	0	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	4481	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCGCCCCTGGCCGTGCT	NA	False	NA	NA	False	NA	NA	NA	132495640	132506063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
21669	chr11	-	2852	20	NIC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-593	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	75.9397267921288	369	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGCTTCAGGATGAGC	NA	False	NA	NA	False	NA	NA	NA	117672363	117656810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117672275
21671	chr15	-	1088	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	132	523	5	-523	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTGCCACCATCAAGAC	163	False	NA	NA	False	NA	NA	NA	98832314	98829828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
21672	chr10	+	3405	15	FSM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	-1	-1107	-1	0	multi-exon	FALSE	canonical	1	267	junction_3	142.059218034492	445	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	NA	False	NA	NA	NA	82695039	82733546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
21673	chr5	-	2682	10	NIC	ENSMUSG00000039753.17	novel	2858	11	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_4	179.02389660477	38	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8855	False	NA	NA	False	NA	NA	NA	43939465	43901957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
21674	chr8	-	2206	11	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.069434878567	4	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615029	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591543_96591723_96591880_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
21675	chr12	+	3237	1	Genic_Genomic	ENSMUSG00000044147.9	novel	NA	NA	NA	NA	594	2197	mono-exon	FALSE	NA	NA	NA	NA	NA	564	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGTTATGTTACTT	NA	False	NA	NA	False	NA	NA	NA	69419517	69422754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_69419500_69422800
21676	chr6	-	2144	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	10	5	10	-5	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	3425	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGCTGCTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	88022242	87976092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
21677	chr4	+	1393	10	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-224	-16	intron_retention	FALSE	canonical	2	236	junction_5	29.8009859808715	921	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCATGTTTTCTGACACC	-15	True	NA	NA	False	NA	NA	NA	41755533	41758679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
21678	chr17	-	2997	16	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-12	-1048	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	217.317484084666	1	114	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAACAGATCCCCAATATT	8725	False	NA	NA	False	NA	NA	NA	24470333	24442219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456243_24459748_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
21679	chr9	-	4399	14	NIC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	0	-13	intron_retention	FALSE	canonical	2	266	junction_12	38.7136353515164	10	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATCATGTCACAGGACT	NA	False	NA	NA	False	NA	NA	NA	66032079	65995427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
21680	chr2	+	4959	10	NIC	ENSMUSG00000036792.13	novel	6037	11	NA	NA	10	-1616	intron_retention	FALSE	canonical	0	0	junction_2	3.48895965957946	1	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGGCTTGAAAACCTGAT	6236	False	NA	NA	False	NA	NA	NA	48839544	49148954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_48840188_48908265_48908338_48989728_48989822_49008663_49008818_49059920_49060026_49121683_49121861_49135553_49136219_49140150_49140254_49141254_49141436_49146188
21681	chrX	+	2076	15	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACCTGGGTAAAGGAGTT	NA	False	NA	NA	False	NA	NA	NA	49653101	49719867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49653238_49653688_49653842_49655630_49655772_49656415_49656572_49659015_49659200_49661806_49662024_49662102_49662226_49666033_49666167_49666748_49666902_49670279_49670435_49684339_49684493_49689620_49689776_49715313_49715387_49716083_49716128_49719767
21682	chr5	-	2098	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	5	0	5	0	multi-exon	FALSE	canonical	3	527	junction_10	41.6678895284064	587	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	22755368	22691486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
21684	chr8	+	2084	9	NIC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	0	2	intron_retention	FALSE	canonical	3	2216	junction_4	105.698199487976	10	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCTCCAGCCCCATC	NA	False	NA	NA	False	NA	NA	NA	84441896	84449906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446569_84447177_84447271_84447585_84447770_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
21685	chr10	+	4394	29	NNC	ENSMUSG00000039994.16	novel	4385	29	NA	NA	-4	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	110.027147624056	1	155	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGATAATAAATATAATTT	6611	False	NA	NA	False	NA	NA	NA	128067953	128088779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076008_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083025_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
21686	chr14	+	1977	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	10	1293	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2369.71039018133	2	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTGCAGTTTCAAGGCT	NA	False	NA	NA	False	NA	NA	NA	63359920	63380605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373161_63373833_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
21687	chr17	-	3416	13	NIC	ENSMUSG00000059811.14	novel	3618	13	NA	NA	26	-6	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	105.266988599888	6	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACGAAAGTTGTGATT	3789	False	NA	NA	False	NA	NA	NA	80203514	80156497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80158223_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
21688	chr7	-	2843	7	NIC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	5	-10	intron_retention	FALSE	canonical	3	2548	junction_3	216.343862096124	5	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCACCTATTGTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	113875297	113863850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_113864192_113865668_113866436_113868955_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
21689	chr5	-	3936	4	Antisense	novelGene_ENSMUSG00000097908.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGGAGGAGGCAGAGC	NA	False	NA	NA	False	NA	NA	NA	136965954	136948024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_136948278_136951152_136951281_136954556_136954748_136962590
21690	SIRV7	-	2427	5	FSM	SIRV7A	SIRV701	2462	5	0	35	0	-33	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATAGAGCGTATAAAACC	NA	False	NA	NA	False	NA	NA	NA	147923	1038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
21691	chr14	+	4068	9	Antisense	novelGene_ENSMUSG00000021969.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	78	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCCGCCCCTCCCTGCGC	2268	False	NA	NA	False	NA	NA	NA	58074953	58127766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_58077268_58077595_58078378_58080646_58080774_58084379_58084520_58094066_58094205_58095989_58096067_58102977_58103099_58111349_58111457_58127504
21692	chr8	+	1856	13	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGTACGGATCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	112720079	112730004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112720343_112720619_112720808_112721495_112721635_112723086_112723218_112724206_112724294_112724921_112725010_112725155_112725327_112725430_112725595_112726701_112726822_112728115_112728241_112728331_112728524_112729146_112729236_112729905
21693	chr13	-	2770	16	NNC	ENSMUSG00000021468.9	novel	2606	15	NA	NA	4	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	56.7840353151013	5	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACATTCCTGAAAAGGAG	1865	False	NA	NA	False	NA	NA	NA	53531397	53486799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53524167_53524384_53527364_53527460_53527997_53528106_53531328
21694	chr6	-	2749	20	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	156.148058157897	1	46	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3487	False	NA	NA	False	NA	NA	NA	125168572	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125161449_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
21695	chr13	+	854	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-13	-21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7949	False	NA	NA	False	NA	NA	NA	74554514	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74555230_74555305
21696	chr1	+	3215	6	NIC	ENSMUSG00000034432.12	novel	2593	7	NA	NA	73	0	intron_retention	FALSE	canonical	3	708	junction_5	28.4042250378355	1	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGCTCTAGAAATTT	NA	False	NA	NA	False	NA	NA	NA	90531322	90540846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
21697	chr2	+	2526	17	NNC	ENSMUSG00000027012.16	novel	2097	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	190.407693761964	1216	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTTTCACTTTTACTT	NA	False	NA	NA	False	NA	NA	NA	71042319	71093642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71068723_71068766_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
21698	chr11	-	2333	13	ISM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	115	-11	11	11	3prime_fragment	FALSE	canonical	3	982	junction_6	81.183776430735	1130	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGGCTGCCTGTCCACT	NA	False	NA	NA	False	NA	NA	NA	96807207	96798240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
21699	chr1	-	3356	5	ISM	ENSMUSG00000026193.16	ENSMUST00000185408.7	4022	17	14248	-2	-4248	0	3prime_fragment	FALSE	canonical	3	2521	junction_4	169.731221347164	6	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGTGGACGTCATTTC	8623	False	NA	NA	False	NA	NA	NA	71634478	71624682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229
21700	chr11	+	4308	30	NNC	ENSMUSG00000017774.20	novel	4547	32	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	64.5092514265938	1	38	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTCTTCCTGTGAGTGT	8858	False	NA	NA	False	NA	NA	NA	75542350	75564736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75542492_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561436_75562469_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
21701	chr5	+	3310	18	NNC	ENSMUSG00000036435.14	novel	3272	18	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	53.8362247965626	179	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGATATTTGATAATATTC	NA	False	NA	NA	False	NA	NA	NA	76677163	76718129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691722_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
21702	chr2	-	2694	12	NIC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	-3	3	intron_retention	FALSE	canonical	3	779	junction_11	113.86224822235	14	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTGTTTCATGTACCAA	8430	False	NA	NA	False	NA	NA	NA	155434650	155405097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155405640_155406679_155406870_155408722_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
21703	chr12	-	3541	11	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	-15	-4	combination_of_known_junctions	FALSE	canonical	3	42	junction_7	26.5375206076227	175	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCTTTTGCCCATGAAG	NA	False	NA	NA	False	NA	NA	NA	83968679	83840848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83878695_83878771_83888991_83889133_83923441_83923587_83968591
21705	chr12	+	3019	10	NNC	ENSMUSG00000072946.13	novel	3168	10	NA	NA	-3	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	79.7618368474796	91	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGAGTATGACTTAT	NA	False	NA	NA	False	NA	NA	NA	84332144	84362591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344982_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
21706	chr6	-	2560	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	366	-3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_15	78.5898918039082	2	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTATCGGAGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	146478912	146451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146477722_146477959_146478798
21707	chr1	+	4051	12	NNC	ENSMUSG00000026199.18	novel	2739	13	NA	NA	11	-7	intron_retention	FALSE	canonical	1	5	junction_5	39.0600300872033	6	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTGTGTGTACT	55	False	NA	NA	False	NA	NA	NA	75168814	75176024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172966_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
21709	chr15	-	3289	13	FSM	ENSMUSG00000022614.9	ENSMUST00000231067.2	3262	13	-35	8	12	1	multi-exon	FALSE	canonical	0	0	junction_12	69.3126471544375	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCCATTTACTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	89239850	89235349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766
21711	chrX	+	2422	1	NIC	ENSMUSG00000031065.15	novel	3270	16	NA	NA	1006	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCAAAGTCTGGTTATAA	6126	False	NA	NA	False	NA	NA	NA	20563689	20566111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20563700_20566100
21712	chr4	+	2909	17	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	55.6557499275681	327	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	141171965	141194536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174649_141175353_141175542_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
21713	chr13	+	2610	17	NNC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_14	55.8366758949707	262	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTAGTTTGCATTCT	4732	False	NA	NA	False	NA	NA	NA	38221214	38245404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241354_38242663_38242718_38243915_38244069_38244730
21714	chr8	-	2145	15	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	48	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1217.95155897105	1	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGTACTTGGCTTCACT	NA	False	NA	NA	False	NA	NA	NA	26337674	26306905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26312745_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325061_26326031_26326117_26329770_26329917_26330039_26330104_26337606
21716	chr11	+	2189	10	NNC	ENSMUSG00000017421.19	novel	2245	11	NA	NA	-12	0	intron_retention	FALSE	canonical	0	0	junction_1	309.002377233254	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTGATACATGATTG	NA	False	NA	NA	False	NA	NA	NA	80274144	80287071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274331_80278546_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
21719	chr14	-	3433	5	FSM	ENSMUSG00000023243.10	ENSMUST00000024011.10	3392	5	-41	0	-41	0	multi-exon	FALSE	canonical	3	94	junction_3	12.5573683548744	348	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGGTATGTTTG	NA	False	NA	NA	False	NA	NA	NA	20231918	20190124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20192526_20194702_20194872_20195023_20195191_20196568_20196681_20231334
21721	chr5	-	4008	16	NIC	ENSMUSG00000006641.13	novel	3436	18	NA	NA	15	0	intron_retention	TRUE	canonical	3	63	junction_15	22.5867217630182	5	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	748	False	NA	NA	False	NA	NA	NA	31205408	31193379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197836_31198001_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
21723	chr10	+	1844	15	Antisense	novelGene_ENSMUSG00000034024.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGAGGAAGCCAACACA	NA	False	NA	NA	False	NA	NA	NA	116886903	116898956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_116887184_116888922_116889071_116889956_116890045_116890781_116890888_116891014_116891136_116891936_116892068_116893088_116893183_116893695_116893824_116894002_116894102_116896550_116896756_116897202_116897315_116897408_116897487_116897929_116898041_116898720_116898788_116898880
21724	chr12	-	2435	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-6	-2324	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	586.265122278308	2	61	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTGTCTTCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	13299220	13269297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277455_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296036_13299152
21725	chr6	+	2940	18	Antisense	novelGene_ENSMUSG00000015112.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	83	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCGGGGACCCCGGCGAC	NA	False	NA	NA	False	NA	NA	NA	6041226	6217059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_6042331_6042560_6042651_6042743_6042903_6052767_6052906_6073403_6073542_6095145_6095226_6096667_6096720_6109177_6109340_6109936_6110022_6113937_6114022_6114223_6114321_6114970_6115108_6117100_6117245_6131627_6131770_6152409_6152522_6191261_6191322_6209711_6209806_6216997
21726	chr17	+	1597	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	79	5	0	0	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	7	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	27775626	27782643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
21727	chr5	+	3667	7	NIC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	0	-4	intron_retention	FALSE	canonical	3	4657	junction_6	287.261591971886	25	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGTCTCTGTAGATTTC	609	False	NA	NA	False	NA	NA	NA	135807489	135819241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135807656_135812158_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
21728	chr15	-	1450	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	166	0	-166	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	13	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTAAGTCCATTCCTT	158	False	NA	NA	False	NA	NA	NA	98832319	98829471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
21729	chr9	+	1919	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	602.339107148125	1	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183569	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204818_108204941_108208069_108208191_108212249_108212381_108213846
21731	chr12	-	3837	10	FSM	ENSMUSG00000021257.15	ENSMUST00000021682.9	3850	10	13	0	13	0	multi-exon	FALSE	canonical	3	66	junction_1	10.9341463112378	109	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTTAGCCTTGTTATTG	NA	False	NA	NA	False	NA	NA	NA	86773221	86747275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488_86764616_86767003_86767438_86768084_86768155_86768614_86768842_86769618_86770195_86773103
21732	chr8	-	3012	24	NNC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	21203	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.8281661924	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	3768	False	NA	NA	False	NA	NA	NA	73154079	73094838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73095080_73095144_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135332_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035
21733	chr2	-	2650	12	NNC	ENSMUSG00000010914.11	novel	2506	11	NA	NA	-20	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	154.678178302485	715	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAAAATAGAAGAGTGGCA	NA	False	NA	NA	False	NA	NA	NA	102903827	102851406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102876466_102876627_102877065_102877159_102888831_102888923_102903634
21734	chr12	+	1853	8	NNC	ENSMUSG00000021134.18	novel	1498	8	NA	NA	0	-327	intron_retention	FALSE	canonical	3	31	junction_5	785.508648414958	9	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTCTGCTCACACTTTT	NA	False	NA	NA	False	NA	NA	NA	80992307	80996944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995330_80995868_80995943_80996267_80996379_80996490
21735	chr1	+	2838	14	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_8	708.473398380643	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTTTGTGATCTCTTTA	NA	False	NA	NA	False	NA	NA	NA	59724167	59750670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743360_59743782_59743910_59744755_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
21736	chr11	+	2805	18	Antisense	novelGene_ENSMUSG00002076300.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	104	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGGGGTCCCGCGGGCTG	NA	False	NA	NA	False	NA	NA	NA	75191107	75239135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75191782_75191946_75192240_75193500_75193581_75196933_75197041_75197939_75198117_75200957_75201096_75203128_75203274_75203517_75203659_75203803_75203995_75204124_75204195_75205637_75205736_75206903_75207062_75209235_75209357_75219497_75219587_75231114_75231226_75231855_75231933_75232969_75233019_75239049
21737	chr5	+	2597	9	NNC	ENSMUSG00000050017.12	novel	2632	11	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	447.04178705687	3	80	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCACCTGTGTGCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	111478623	111536222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111528060_111528169_111530853_111530977_111534368
21738	chr12	-	2042	15	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	264.400988373836	134	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87519039	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497126_87497305_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
21739	chr6	+	1776	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	0	80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1788.1176168167	2	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAATAAAGCTTAAGGTT	5115	False	NA	NA	False	NA	NA	NA	85429000	85445344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436189_85436908_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
21740	chr5	+	2596	1	Antisense	novelGene_ENSMUSG00000107283.4_AS_novelGene_ENSMUSG00000101678.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAACCAAGAGGATAAGTC	NA	False	NA	NA	False	NA	NA	NA	31308493	31311089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31308500_31311100
21741	chr8	-	1959	17	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCCACGTGCGCGCTTGC	NA	False	NA	NA	False	NA	NA	NA	107649693	107620297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107620343_107621220_107621384_107624691_107624883_107625072_107625159_107627477_107627564_107630857_107630913_107632826_107632927_107633019_107633114_107634836_107634932_107637571_107637637_107638855_107638981_107639979_107640135_107642785_107642893_107644211_107644307_107645248_107645437_107648802_107648913_107649494
21742	chr11	+	1579	11	Antisense	novelGene_ENSMUSG00000119662.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCGGAGTGCCCGCCTAT	NA	False	NA	NA	False	NA	NA	NA	69557762	69563141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69558444_69558520_69558600_69558846_69558938_69559021_69559159_69559229_69559373_69559467_69559580_69559903_69559976_69561053_69561097_69561438_69561574_69561753_69561803_69563104
21743	chr8	+	2591	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	652.243963176356	1	89	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGTGCTGTGTGAATAC	NA	False	NA	NA	False	NA	NA	NA	75836199	75854320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836719_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849737_75850471_75850598_75851428_75851556_75852887_75852993_75853850
21744	chr11	-	3027	7	NIC	ENSMUSG00000018678.14	novel	3055	7	NA	NA	29	4	combination_of_known_splicesites	FALSE	canonical	3	301	junction_6	68.1854089963535	421	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCGTTTGGCAGTTGGG	NA	False	NA	NA	False	NA	NA	NA	96868508	96844162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854268_96868446
21745	chr3	-	2467	11	NNC	ENSMUSG00000028114.17	novel	2741	11	NA	NA	24	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	82.8275316546376	4	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	123179610	123161945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179537
21746	chr2	+	2917	17	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	4	0	intron_retention	FALSE	canonical	2	5	junction_16	168.777914357892	2	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	638	False	NA	NA	False	NA	NA	NA	31462807	31507532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31506190
21747	chr5	+	3134	3	NNC	ENSMUSG00000018604.19	novel	4856	8	NA	NA	14	-29	intron_retention	FALSE	non_canonical	0	0	junction_1	538	11	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATTTCAATAAATTTTTA	NA	False	NA	NA	False	NA	NA	NA	119809096	119822760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_119810041_119819005_119819131_119820695
21748	chr2	+	1609	16	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	18	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	741.552287809535	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACATTAGTCTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	31360236	31410667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31360352_31364718_31364783_31366897_31366971_31368961_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
21749	chr14	+	1636	11	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-14	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	615.896980021821	6	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAATTAATCCTCAGA	NA	False	NA	NA	False	NA	NA	NA	30271123	30295569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292167_30295311
21750	chr8	+	3283	7	FSM	ENSMUSG00000019261.4	ENSMUST00000019405.4	3314	7	33	-2	-17	0	multi-exon	FALSE	canonical	3	269	junction_1	20.5236990384829	285	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTACTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	71358608	71370173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71358772_71363588_71363694_71364489_71364573_71365156_71365298_71365549_71367639_71368994_71369219_71369695
21752	chrX	-	1845	3	Antisense	novelGene_ENSMUSG00000006373.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCAGCGTTCTTTGACAGA	NA	False	NA	NA	False	NA	NA	NA	35869720	35861858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_35862267_35865772_35865930_35868440
21753	chr6	-	1913	1	ISM	ENSMUSG00000045962.17	ENSMUST00000159903.2	2934	2	1123	257	1123	-255	mono-exon	FALSE	NA	NA	NA	NA	NA	21	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGTACACTTTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	119903099	119901186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_119901200_119903100
21755	chr11	+	4037	3	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	20	-1	intron_retention	FALSE	canonical	3	210	junction_2	19	27	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCATGTTTTTAGATATC	NA	False	NA	NA	False	NA	NA	NA	71933300	71938195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_71936601_71937165_71937220_71937512
21757	chr18	+	1501	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	2983	1000	at_least_one_novel_splicesite	FALSE	canonical	2	54	junction_1	576.055335883628	1	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGATTGTTTTGAGTG	NA	False	NA	NA	False	NA	NA	NA	67911027	67926663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67911126_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
21758	chr1	+	2885	9	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	11994	170	intron_retention	FALSE	canonical	3	281	junction_4	34.8747759849436	2	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAACAGCAGCCCACTT	NA	False	NA	NA	False	NA	NA	NA	132417373	132432398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_132418324_132420290_132420401_132421552_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
21759	chr2	-	3931	20	FSM	ENSMUSG00000041997.17	ENSMUST00000038584.9	4280	20	331	18	0	-18	multi-exon	TRUE	canonical	3	163	junction_17	29.5425886295749	90	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGACAGTAAAAATGTAAAGA	NA	False	NA	NA	False	NA	NA	NA	70655741	70542768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_70544510_70546955_70547064_70548125_70548238_70551417_70551554_70551901_70552072_70552250_70552433_70554345_70554428_70555823_70555922_70568764_70568832_70572397_70572587_70575846_70575984_70576277_70576389_70579578_70579672_70580778_70580869_70582578_70582675_70584783_70584831_70587817_70587894_70600347_70600420_70617220_70617340_70655536
21761	chr5	-	6234	11	Antisense	novelGene_ENSMUSG00000041147.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTCCGCTCCCGCAGCGGT	NA	False	NA	NA	False	NA	NA	NA	150466225	150446153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_150446362_150446639_150446741_150452930_150453167_150454537_150454641_150455146_150455197_150455517_150455559_150455753_150455866_150458055_150458108_150458903_150459014_150459493_150460601_150462111
21762	chr1	+	2923	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	6	-1916	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.1517904045108	328	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTTTTACTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	190795214	190816755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367_190815835_190815887
21763	chr8	+	3131	12	FSM	ENSMUSG00000001482.16	ENSMUST00000065534.10	3127	12	-12	8	-12	0	multi-exon	FALSE	canonical	3	130	junction_1	53.2429330273546	494	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	NA	False	NA	NA	NA	124169712	124190001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
21764	chr16	-	1782	16	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	12	113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1682.57772348131	3	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292735	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284526_87284557_87284601_87285694_87285833_87287208_87287266_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
21766	chr4	+	2379	13	Antisense	novelGene_ENSMUSG00000040697.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGCCCAGGCCCGGGGC	NA	False	NA	NA	False	NA	NA	NA	141493317	141518004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_141493894_141493972_141494052_141495010_141495098_141495203_141495382_141497160_141497350_141498218_141498348_141501810_141501973_141502678_141502780_141504203_141504389_141510081_141510418_141511998_141512065_141516198_141516385_141517899
21767	chr2	+	2944	12	NIC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	13	-309	intron_retention	TRUE	canonical	3	416	junction_6	46.7767689745934	506	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGTATTTTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	25162502	25175618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25162690_25162926_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
21768	chr5	-	2496	9	FSM	ENSMUSG00000029388.15	ENSMUST00000031334.15	2013	9	61	-544	5	544	multi-exon	FALSE	canonical	0	0	junction_4	226.339761199839	127	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATAATATATGTATGAAAT	NA	False	NA	NA	False	NA	NA	NA	124717133	124707731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
21769	chr8	-	1890	6	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-54	-2	at_least_one_novel_splicesite	FALSE	non_canonical	1	4	junction_1	2094.35150822397	3	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATGAGTTCAATTTCT	NA	False	NA	NA	False	NA	NA	NA	43760071	43748105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43748731_43748799_43749574_43753664_43753743_43757512_43757597_43758460_43758596_43759877
21770	chr3	-	1730	13	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-10	40	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	242.200444994545	232	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGACTCTGTCAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	88857731	88830901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857422
21771	chr7	-	2555	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	12	12	12	-12	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	1	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCATCTGCCTCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	33867988	33840124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
21773	chr3	-	3307	5	FSM	ENSMUSG00000001017.16	ENSMUST00000001043.14	3257	5	-50	0	-3	0	multi-exon	FALSE	canonical	3	892	junction_3	258.017804618208	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	90416808	90406262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90414934_90416497
21774	chr9	-	1225	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	46	3	-22	1	multi-exon	FALSE	canonical	3	621	junction_4	33.1083071146804	1905	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTGATGGTGTAGCCCAG	NA	False	NA	NA	False	NA	NA	NA	35087311	35035706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
21775	chr15	+	1769	4	Antisense	novelGene_ENSMUSG00000023021.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGTTATTAGATGCTTT	NA	False	NA	NA	False	NA	NA	NA	99633472	99638144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99634316_99636543_99636702_99637285_99637398_99637488
21778	chr11	+	1531	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	60	35	60	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	24	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTGGACAGTCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653679	120655210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653700_120655200
21779	chr3	-	3551	23	NNC	ENSMUSG00000033222.17	novel	4544	17	NA	NA	11	1083	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	58.1931984608806	5	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCAGTTTGTTCGTGTTC	NA	False	NA	NA	False	NA	NA	NA	100876968	100848087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100848362_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
21781	chr17	-	2599	21	NNC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	114.098849687453	4	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	24746791	24727823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732353_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104_24738221_24746739
21782	chrX	+	4263	2	FSM	ENSMUSG00000072969.3_ENSMUSG00000106264.3	ENSMUST00000128847.2	2329	2	-18	-1916	-16	0	multi-exon	FALSE	canonical	3	91	junction_1	0	8	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	NA	NA	NA	134643465	134648071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134645325_134645667
21784	chr3	+	3591	8	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	-130	-16	intron_retention	FALSE	canonical	3	130	junction_1	24.9669168856611	4	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAACTTCTTTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	95190782	95203456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95202737_95202961
21785	chr17	-	2217	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	35	-2	8	2	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	82	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTGGGAGGTATGCATG	NA	False	NA	NA	False	NA	NA	NA	13179599	13161774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
21787	chr5	-	2145	14	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-16	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	593.411568762211	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGTTAATAACTCTGT	3741	False	NA	NA	False	NA	NA	NA	138168659	138162859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167129_138167384_138167541_138167610_138167736_138167821_138167987_138168578
21788	chr8	+	3247	15	FSM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	2	2	1	-2	multi-exon	FALSE	canonical	3	239	junction_7	19.6926641267291	186	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTGTGTCATACAGA	NA	False	NA	NA	False	NA	NA	NA	88864484	88898653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
21790	chr11	+	1629	1	ISM	ENSMUSG00000020612.17	ENSMUST00000106677.8	3513	12	18591	32	2052	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAATAAAAAAGATGAAATA	NA	False	NA	NA	False	NA	NA	NA	109558821	109560450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_109558800_109560400
21791	chr4	-	2312	10	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	3	1	intron_retention	FALSE	non_canonical	0	0	junction_9	521.949999970434	20	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCGGTCATCTGCATTC	NA	False	NA	NA	False	NA	NA	NA	124830632	124812256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_124812824_124813405_124813493_124814051_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381_124830466_124830528
21792	chr4	+	2156	9	NNC	ENSMUSG00000028410.14	novel	5622	9	NA	NA	-7	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1211.59829873601	2	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATTACAAAGTGTTTCCA	-19	True	NA	NA	False	NA	NA	NA	40722937	40733884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40723002_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728188_40730226_40730288_40731683_40731800_40732075_40732177_40732727
21793	chr13	-	1796	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2842.35626240782	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTATTTTTGGTGGTCTT	5123	False	NA	NA	False	NA	NA	NA	58549958	58539769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540104_58541016_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
21794	chrX	-	2048	12	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	3	168	junction_10	371.664893941343	10	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAAAACCTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	100129011	100122819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127701_100127881_100128877
21795	chr19	+	2437	11	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	120.67481095904	26	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTCTAGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	38043484	38062870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745_38062116_38062181
21796	chrX	+	2738	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	-15	-1	-15	1	multi-exon	TRUE	canonical	3	583	junction_1	9.62635271879577	493	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGAGGTTGTTGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	72683009	72687121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
21797	chr9	+	3045	8	ISM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	14030	2697	-298	1563	intron_retention	FALSE	canonical	3	211	junction_5	54.7603312403333	2	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTGCTAATGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	63523971	63549173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874
21798	chr14	+	3837	14	FSM	ENSMUSG00000021987.10	ENSMUST00000022563.9	3813	14	-26	2	-26	-2	multi-exon	FALSE	canonical	3	64	junction_3	13.0256915000032	92	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGAGTGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	60502650	60539817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_60502811_60514577_60514695_60517531_60517695_60519385_60519544_60522365_60522495_60526991_60527127_60529442_60529576_60530366_60530477_60530832_60530959_60533568_60533619_60534022_60534224_60535511_60535644_60536363_60536491_60537721
21799	chr4	+	2942	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	1	intron_retention	FALSE	canonical	3	85	junction_1	49.4621067080649	299	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTTGAGGTCATGATGT	8312	False	NA	NA	False	NA	NA	NA	156194495	156211721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
21800	chr18	-	3222	14	NNC	ENSMUSG00000041891.17	novel	1741	14	NA	NA	-7	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	259.05495064874	388	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTGGTTTTTTCCTCCA	NA	False	NA	NA	False	NA	NA	NA	66135699	66113828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_66114172_66115613_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
21801	chr1	+	2077	6	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	3576	junction_1	947.714429561986	64	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862733	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160865608_160865794_160865843_160866026
21802	chr1	-	3447	1	Antisense	novelGene_ENSMUSG00000026436.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCAGTGATTAGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	131960344	131956897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_131956900_131960300
21803	chr1	-	1658	1	Antisense	novelGene_ENSMUSG00000026436.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCTGCTTCATCCTCTGA	NA	False	NA	NA	False	NA	NA	NA	131954152	131952494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_131952500_131954200
21805	chr7	-	2967	6	NIC	ENSMUSG00000042502.11	novel	3284	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	356	junction_5	100.950681027916	658	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGTGGTAATTTAATAAA	5491	False	NA	NA	False	NA	NA	NA	126795139	126791196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126793103_126793186_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
21806	chr15	+	2256	8	NIC	ENSMUSG00000060992.10	novel	1676	9	NA	NA	-1	1	intron_retention	FALSE	canonical	3	554	junction_1	185.288743228905	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGTGTGATGGCTCT	NA	False	NA	NA	False	NA	NA	NA	103181326	103208293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_103181369_103197527_103197597_103199101_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
21807	chr13	-	1694	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	10	478	10	-478	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	4	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAACGGTGTCCTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	34314327	34311208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
21808	chr5	+	1771	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	13	891	13	124	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGAGGGACTCTGGTTC	NA	False	NA	NA	False	NA	NA	NA	142946110	142958049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
21809	chr6	+	2125	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	25	1483	25	434	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACAGCTGGGGATTTTT	562	False	NA	NA	False	NA	NA	NA	88061488	88080803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
21810	chr1	-	2596	8	ISM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	30	8066	30	-198	5prime_fragment	FALSE	canonical	3	455	junction_1	37.3357627975306	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAGATTTGAGAAACGTA	54	False	NA	NA	False	NA	NA	NA	106724428	106705225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
21811	chr1	-	1105	2	ISM	ENSMUSG00000009905.6	ENSMUST00000187319.2	640	4	4204	4716	4188	-4716	internal_fragment	FALSE	canonical	3	187	junction_1	0	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATTGTCCCAACCCTGA	NA	False	NA	NA	False	NA	NA	NA	106683225	106679945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_106680999_106683173
21814	chr5	-	2949	14	NNC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	-3	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	224.759490127485	3	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATCTTGGCCCAAGTCC	NA	False	NA	NA	False	NA	NA	NA	52347839	52307560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319044_52319863_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
21815	chr1	-	2467	13	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	304.84203559658	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624052	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612561_177623838
21816	chr14	-	2632	12	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	-12155	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	344.389866525264	3	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTTGTTTTTT	4564	False	NA	NA	False	NA	NA	NA	52412742	52397897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409903_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698
21817	chr8	-	5050	15	ISM	ENSMUSG00000031563.9	ENSMUST00000057561.9	8678	23	115274	2126	115274	-2126	3prime_fragment	TRUE	canonical	3	197	junction_14	23.5476070104452	153	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTTAATGTTGCTTATT	NA	False	NA	NA	False	NA	NA	NA	48328312	48279119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_48281820_48284646_48284775_48295899_48296143_48299181_48299275_48300428_48300594_48302340_48302525_48304939_48305062_48309218_48309384_48311764_48311958_48316887_48316975_48317086_48317168_48317539_48317670_48321206_48321827_48322813_48322904_48328263
21818	chr1	+	3077	2	NNC	ENSMUSG00000003464.14	novel	599	2	NA	NA	3359	235	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATCTAACTTTGAATC	NA	False	NA	NA	False	NA	NA	NA	171957698	171963085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171958096_171960405
21819	chr9	+	4600	4	FSM	ENSMUSG00000032261.17	ENSMUST00000113215.10	4565	4	-35	0	-34	0	multi-exon	FALSE	canonical	3	104	junction_2	12.4988888395018	195	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTTATTTTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	83430345	83483399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_83430557_83459488_83459675_83476710_83476792_83479277
21820	chr11	-	2669	9	NIC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-1	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	193.3874026404	594	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7745	False	NA	NA	False	NA	NA	NA	113456606	113135679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113452831_113452951_113456501
21821	chr5	+	2344	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	26	-1	26	1	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	833	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAAGGTTTATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	64250318	64285695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
21822	chr11	+	1930	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	107	447	0	182	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	1	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940625	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
21824	chr1	-	2357	16	NNC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	-1	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	294.256622695225	2	55	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGTGTGAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	63215823	63182750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63203967_63210007_63210074_63211312_63211417_63215586
21825	chr6	+	2564	3	NIC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	867	568	intron_retention	FALSE	canonical	3	2598	junction_1	10.5	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACATTTGCTTTTGCTGT	1754	False	NA	NA	False	NA	NA	NA	88077135	88080937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_88077750_88077843_88079203_88080346
21826	chr13	-	2820	30	NIC	ENSMUSG00000021585.11	novel	2857	30	NA	NA	16	-12	combination_of_known_junctions	FALSE	canonical	3	49	junction_27	26.473283146802	179	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCAATCTCCTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	74918752	74842385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74918664
21828	chr18	+	3881	5	NNC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	13	-14	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	1173.71610707189	3674	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCCAACTTACTTCTT	NA	False	NA	NA	False	NA	NA	NA	80250022	80269056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393_80266876_80267045
21829	chr1	-	3063	6	Antisense	novelGene_ENSMUSG00000026687.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCCTAGACTACACCGCA	NA	False	NA	NA	False	NA	NA	NA	167196100	167183615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_167185018_167188969_167189159_167189370_167189461_167192076_167192217_167193341_167193453_167194969
21830	chr13	-	2039	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2842.35626240782	1	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5076	False	NA	NA	False	NA	NA	NA	58550005	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541013_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
21831	chr11	+	4455	3	NIC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	3035	-2	intron_retention	FALSE	canonical	3	5989	junction_1	103.5	11	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCGGGGTGTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	95565310	95571597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_95566111_95566395_95568973_95570519
21833	chr17	+	1177	7	NNC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	797	1023	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	654	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTTGGGCTCCGCGCCC	NA	False	NA	NA	False	NA	NA	NA	26049609	26051840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26049991_26050081_26050193_26050282_26050339_26050516_26050605_26050768_26050936_26051019_26051219_26051665
21834	chr15	-	2227	14	NIC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	14	0	intron_retention	FALSE	canonical	3	447	junction_6	35.2853121629648	36	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	NA	False	NA	NA	NA	102259108	102246690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102246941_102247075_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387
21836	chr17	-	2538	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	-57	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	660.17080736576	1	68	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAAAGTGGCTTGCCTT	5683	False	NA	NA	False	NA	NA	NA	33904450	33865217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871243_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889050_33889108_33896247_33896415_33904240
21837	chr2	-	3063	28	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-17	-233	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	71.4387897844795	1	95	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAACAGAGCAAGAAGTTG	NA	False	NA	NA	False	NA	NA	NA	103591566	103552238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562414_103563311_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
21838	chr17	+	1599	4	NNC	ENSMUSG00000023892.9	novel	2574	5	NA	NA	4	-2541	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	52.6898683071254	5	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTGGATTGTGTTACAC	NA	False	NA	NA	False	NA	NA	NA	21670639	21683308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21670670_21672698_21672790_21676558_21676651_21681922
21839	chr7	-	2380	16	NIC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	104	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	532.373553062133	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATCTGCCTCTGTTGCC	NA	False	NA	NA	False	NA	NA	NA	33867896	33840123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33867797
21840	chr1	+	2552	5	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	-7	-1922	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	112.504166589509	5	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAATTGCATTTTTACTG	NA	False	NA	NA	False	NA	NA	NA	190795201	190816749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_190795470_190797371_190797451_190812685_190812754_190814367_190814973_190815217
21841	chr8	+	4009	16	NNC	ENSMUSG00000089704.10	novel	4113	16	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	50.2078347139833	211	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCGCCGCTGTCAGTCT	8672	False	NA	NA	False	NA	NA	NA	124958236	125072461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124958389_125022096_125022191_125032253_125032408_125050410_125050510_125050727_125050799_125051009_125051076_125054830_125054953_125056451_125056540_125058747_125058836_125059306_125059411_125061013_125061141_125063312_125063406_125064000_125064085_125065181_125065309_125067557_125067678_125070041
21842	chr5	+	2630	13	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	40	764	intron_retention	FALSE	canonical	3	859	junction_6	71.0756150557669	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGGATTTGGTCCATTC	NA	False	NA	NA	False	NA	NA	NA	31652177	31668967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
21844	chr8	+	2178	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	-5	intron_retention	FALSE	canonical	3	129	junction_1	111.95784921121	60	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGCTGGTTGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	85415911	85426409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969
21845	chr14	+	1120	7	Antisense	novelGene_ENSMUSG00000060373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGACCGAGGATCTGTC	7372	False	NA	NA	False	NA	NA	NA	52312276	52321769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52312620_52312713_52312892_52313067_52313186_52314861_52315023_52318718_52318765_52319284_52319361_52321571
21848	chr9	+	2016	8	NNC	ENSMUSG00000032309.16	novel	2112	7	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	447.218615216225	17	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	NA	False	NA	NA	NA	55116230	55131717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523_55130911_55130984
21849	chr9	-	1821	19	Antisense	novelGene_ENSMUSG00000032604.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	12	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGAATCTGGTGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	108391826	108385598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108385729_108386074_108386186_108386347_108386423_108386638_108386702_108387290_108387354_108387490_108387550_108388337_108388407_108388526_108388614_108388726_108388816_108389679_108389778_108389893_108389976_108390056_108390166_108390262_108390394_108390482_108390574_108390863_108391005_108391090_108391177_108391260_108391406_108391486_108391592_108391739
21851	chr1	+	2115	15	FSM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	26	12	26	-12	multi-exon	FALSE	canonical	3	28	junction_14	169.094301066184	63	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCTCCCTATAGAGCCTT	NA	False	NA	NA	False	NA	NA	NA	131080943	131099964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131099657
21852	chr17	+	2827	15	NIC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	23	-2	intron_retention	FALSE	canonical	3	635	junction_14	77.6569181642918	37	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	NA	NA	NA	56386660	56407605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
21853	chr5	+	3333	6	NNC	ENSMUSG00000029177.10	novel	1031	6	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	791.376623359573	24	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTGAATAAAGCGCTTGAA	9186	False	NA	NA	False	NA	NA	NA	30824240	30831719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30825491_30825654_30826251_30826592_30827173_30829807_30829915_30830325_30830788_30831381
21854	chr6	+	1752	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	21	2	21	-2	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	729	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTTGCTTCCCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	145561503	145567203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
21855	chr8	+	2978	6	NIC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	14	-1	intron_retention	FALSE	canonical	2	6	junction_4	195.220490727792	15	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGTGGCTCTCTGCATG	NA	False	NA	NA	False	NA	NA	NA	43633591	43646917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_43633650_43636158_43636403_43636739_43638496_43640607_43640749_43643305_43643407_43646239
21856	chr14	+	2464	3	NNC	ENSMUSG00000004561.15	novel	796	7	NA	NA	1	338	intron_retention	FALSE	non_canonical	0	0	junction_2	102	2	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACCTCTGAAAGAGCAGT	NA	False	NA	NA	False	NA	NA	NA	52122403	52125067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52122481_52122607_52122762_52122834
21857	chr6	-	4152	3	NIC	ENSMUSG00000063884.7	novel	2364	9	NA	NA	-3156	0	intron_retention	FALSE	canonical	3	875	junction_2	42	3	56	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATTCTTTGTAAGCGTG	NA	False	NA	NA	False	NA	NA	NA	71862735	71857626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71858216_71858489_71861610_71862292
21859	chr2	+	3223	5	ISM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	15308	3	2693	-3	3prime_fragment	FALSE	canonical	3	1406	junction_2	64.6625857818878	2	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTGTTCCATATAAGT	NA	False	NA	NA	False	NA	NA	NA	27420476	27426544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
21860	chr6	-	2104	12	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	11	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	224.222734598309	19	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCTCACAGTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	95695770	95451126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95451776_95451890_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
21861	chr17	+	3520	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	9	-1001	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	181.227236431199	1	122	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCCATTCCCGGAAGGA	NA	False	NA	NA	False	NA	NA	NA	32255411	32280829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274870_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
21862	chr5	+	2847	7	NIC	ENSMUSG00000029110.14	novel	2895	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	314	junction_1	732.601623591491	1	123	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34493761	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506088_34507255_34507416_34508133_34508183_34508574
21863	chr7	-	2409	16	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	44	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	536.324155711823	5	65	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTGCCCTAGTGGGTT	NA	False	NA	NA	False	NA	NA	NA	33867956	33840113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856733_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
21864	chr18	+	2251	5	FSM	ENSMUSG00000073568.3	ENSMUST00000234910.2	2257	5	0	6	0	4	multi-exon	FALSE	canonical	3	262	junction_1	19.1441897190766	743	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTTCAGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	47054881	47067293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472
21865	chr9	-	3385	23	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	67.804349064541	1	126	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61854042	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832253_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
21866	chr9	+	1180	7	NNC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	-5	2	intron_retention	FALSE	non_canonical	0	0	junction_6	1013.84038848989	6	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9560	False	NA	NA	False	NA	NA	NA	64188879	64212076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201669_64208323_64208531_64211809
21867	chr15	-	4003	5	NIC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	24	-13	intron_retention	FALSE	canonical	3	653	junction_3	73.3450748176045	10	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTATACAAAACTCTCTC	NA	False	NA	NA	False	NA	NA	NA	57897687	57885678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
21869	chr8	+	2205	8	NNC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	-82	3	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	173.163365122096	61	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	43633495	43646921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640023_43640749_43643105_43643129_43643305_43643407_43646239
21870	chr11	+	1918	7	NNC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	-7359	-18	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	1908.08557343625	1845	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGCTTTTGTGGATGTA	NA	False	NA	NA	False	NA	NA	NA	52115462	52137667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52115633_52122509_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
21871	chr16	+	3062	5	NNC	ENSMUSG00000022679.14	novel	2315	5	NA	NA	1	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	80.7635437558308	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAGAA	529	False	NA	NA	False	NA	NA	NA	13758566	13767482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615_13767023_13767249
21872	chr11	-	2923	20	FSM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	-66	8	-47	-8	multi-exon	FALSE	canonical	3	224	junction_9	41.6618095045227	426	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTACATGAGTTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	117671531	117656821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
21873	chr3	+	2874	12	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	-7	1	combination_of_known_junctions	TRUE	canonical	1	2	junction_2	65.9633005905055	301	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCGTTCCTACCTTGG	NA	False	NA	NA	False	NA	NA	NA	95188648	95203475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95188923_95189993_95190056_95190541_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
21874	chr5	+	3972	17	FSM	ENSMUSG00000029710.16	ENSMUST00000061244.15	4340	17	356	12	35	-4	multi-exon	FALSE	canonical	3	265	junction_1	33.7925657504724	306	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTCCAGAGGGTGACT	NA	False	NA	NA	False	NA	NA	NA	137348726	137372778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137348912_137352350_137352422_137352541_137352830_137355803_137356201_137358626_137358783_137359395_137359729_137360651_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
21875	chr14	-	1686	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-4550	0	at_least_one_novel_splicesite	FALSE	canonical	1	49	junction_8	1061.29116527935	8	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63751091	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63750903
21876	chrX	-	2823	4	Antisense	novelGene_ENSMUSG00000033460.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	36	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGGTAGACCAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	133623415	133618738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_133618798_133619666_133619742_133620375_133620467_133620817
21879	chr8	+	2922	10	Intergenic	novelGene_1625	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGGCCTGAGATCACAC	NA	False	NA	NA	False	NA	NA	NA	43582844	43633323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43584611_43589312_43589408_43589570_43589596_43591602_43591834_43593678_43593776_43594002_43594343_43595726_43595762_43597363_43597563_43618052_43618099_43633235
21880	chr6	+	2255	17	NNC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	245.347712440936	111	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	NA	False	NA	NA	NA	40302428	40373696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331687_40331742_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343716_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
21881	chr13	+	1867	7	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-42	695	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	126.590437588662	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAAGCTTGTGTGTGGACC	NA	False	NA	NA	False	NA	NA	NA	62163755	62199495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729_62197194_62197873_62198118_62198285_62199072_62199421
21883	chr6	-	2361	12	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	286.922024135277	1694	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCTCACAGTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	95695779	95451126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95646064_95646198_95695669
21884	chr8	+	4112	19	FSM	ENSMUSG00000031622.17	ENSMUST00000004494.16	4115	19	0	3	0	-3	multi-exon	FALSE	canonical	3	31	junction_6	282.896831519815	62	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCCTCAGGGTCCTTC	NA	False	NA	NA	False	NA	NA	NA	73449915	73484826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73468101_73468192_73468437_73468557_73471085_73471294_73471521_73471639_73473037_73473277_73474312_73474497_73476346_73476897_73477063_73477234_73479794_73479969_73480172_73480266_73483100_73483196_73483475_73483681_73483802
21885	chrX	-	2350	4	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	intron_retention	FALSE	canonical	3	11043	junction_3	2785.17771226342	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101229267_101230001_101231978_101232903
21886	chr18	-	3756	15	ISM	ENSMUSG00000042211.8	ENSMUST00000048688.8	4254	22	-52	9729	-52	-13	5prime_fragment	FALSE	canonical	3	214	junction_14	35.5617456700601	20	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCAGCTTGAATTTTA	NA	False	NA	NA	False	NA	NA	NA	62681818	62646954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
21888	chr17	+	3143	13	FSM	ENSMUSG00000069135.12	ENSMUST00000097419.10	3505	13	19	343	0	-14	multi-exon	FALSE	canonical	3	46	junction_7	116.477107908235	441	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAGTATCCTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	8384351	8415293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8394350_8394411_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
21889	chr12	-	1945	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	-17	-2	-17	2	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	1213	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008992	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
21890	chr4	-	2113	13	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	115.888236388916	25	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149251126	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235221_149235309_149235433_149235569_149235605_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
21891	chr18	+	1773	11	NIC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	321.902174581036	2018	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	1008	False	NA	NA	False	NA	NA	NA	84953114	84999598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999019_84999091_84999246
21892	chr7	+	1810	3	NNC	ENSMUSG00000038503.16	novel	815	2	NA	NA	-539	1096	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	654	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	NA	False	NA	NA	NA	83533134	83548384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83533285_83544737_83544971_83546957
21893	chr5	-	2160	13	Antisense	novelGene_ENSMUSG00000039682.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCGCGTGGCAGGGC	NA	False	NA	NA	False	NA	NA	NA	45670003	45650760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_45650909_45652519_45652624_45654261_45654314_45654667_45654775_45655773_45655934_45657742_45657908_45660719_45660887_45662095_45662189_45663514_45663602_45664445_45664550_45666777_45666858_45668447_45668557_45669219
21894	chr8	+	2241	18	NNC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	2	-1100	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_8	258.880635411387	55	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1908	False	NA	NA	False	NA	NA	NA	106937656	106978326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967859_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
21895	chr5	+	1999	3	Antisense	novelGene_ENSMUSG00000029427.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTGGTCTACAAAGTG	NA	False	NA	NA	False	NA	NA	NA	123837831	123841582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_123839186_123840625_123840744_123841055
21896	chr5	-	3554	8	FSM	ENSMUSG00000039474.14	ENSMUST00000043964.13	3787	8	231	2	-41	1	multi-exon	FALSE	canonical	3	110	junction_7	10.259888211986	180	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCTTGCCTTCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	37146318	37123449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_37126023_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
21897	chr8	-	2130	13	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	-32	10	combination_of_known_splicesites	FALSE	canonical	2	20	junction_10	507.725045888247	11	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATGCTGACTGGGTGTG	7607	False	NA	NA	False	NA	NA	NA	41827704	41793687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807863_41807955_41813289_41813337_41827542
21898	chr16	-	4128	6	ISM	ENSMUSG00000032932.16	ENSMUST00000232633.2	1837	10	313	9766	0	-175	5prime_fragment	FALSE	canonical	1	1	junction_1	24.0914922742449	118	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACAAATATTGTTTTCTAT	4011	False	NA	NA	False	NA	NA	NA	75563679	75552084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_75555337_75555519_75555616_75556302_75556471_75557983_75558198_75561831_75562173_75563622
21899	chr11	-	2130	14	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	3	257	combination_of_known_junctions	FALSE	canonical	3	36	junction_12	280.168482699651	585	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCAACTAGCGTCCCTTT	4518	False	NA	NA	False	NA	NA	NA	6217743	6208661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216918_6217417_6217580_6217659
21900	chr6	+	3577	20	NNC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	-1	-174	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	41.2889285798106	9	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAACAACAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114620081	114837399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683130_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
21901	chr2	-	4592	6	NNC	ENSMUSG00000036093.8	novel	5239	6	NA	NA	-4377	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	154.793281507952	152	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATATTCTTGGGGGTTT	1830	False	NA	NA	False	NA	NA	NA	52306704	52287965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_52291179_52291506_52292445_52294917_52295070_52302073_52302158_52306075_52306224_52306647
21902	chr2	-	2464	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	153	0	-5	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	504	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	NA	False	NA	NA	NA	36026632	36006090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
21903	chr2	-	1527	6	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	5	31904	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.9629310727547	19	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCCTCGTCTTTTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	156681807	156643064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680454_156681718
21905	chr14	+	2764	18	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	30	-274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	256.731235605721	6	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATTGTATCACTCCC	NA	False	NA	NA	False	NA	NA	NA	122344479	122396742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384131_122384169_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
21907	chr17	+	3158	10	NNC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	25	-299	intron_retention	FALSE	canonical	3	7	junction_3	118.226816953319	4	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAATCCTTTTCTTAATCT	NA	False	NA	NA	False	NA	NA	NA	27136119	27151258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27136260_27139770_27139906_27139993_27140094_27140552_27140835_27141649_27141698_27141878_27142277_27142982_27144707_27144799_27144874_27145193_27145270_27151077
21908	chr8	-	1877	6	NNC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	283.834740650259	2050	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	65186582	65171172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186464
21910	chr11	+	2638	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	0	-650	0	649	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	176	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTTCGCCCTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	116562494	116567274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
21912	chr2	+	2282	14	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-6	4082	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	103.681578993017	1182	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	162859404	162892143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122_162888094_162892010
21913	chr10	-	3530	15	FSM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	5	-1	5	1	multi-exon	FALSE	canonical	3	126	junction_9	20.2858400398517	198	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTGAGCTTGAACCT	NA	False	NA	NA	False	NA	NA	NA	92558277	92520606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
21914	chr14	+	1787	15	Antisense	novelGene_ENSMUSG00000077797.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGGGCCGGGCCGAGTGC	1510	False	NA	NA	False	NA	NA	NA	30734389	30741018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30734590_30734677_30734749_30735125_30735216_30735387_30735523_30735609_30735751_30736007_30736184_30736545_30736633_30736860_30736984_30737231_30737345_30738281_30738414_30738785_30738864_30739012_30739127_30739234_30739372_30739766_30739824_30740885
21915	chr9	+	3055	14	FSM	ENSMUSG00000009828.16	ENSMUST00000044551.8	6560	14	-27	3532	4	637	multi-exon	FALSE	canonical	2	83	junction_12	10.9192842819834	307	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGGTGAAATTTTATTA	NA	False	NA	NA	False	NA	NA	NA	78020569	78075857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78020738_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
21916	chr6	+	1358	5	Antisense	novelGene_ENSMUSG00000025823.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	187	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGACCACATCATCTCC	NA	False	NA	NA	False	NA	NA	NA	47773074	47780417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_47773839_47775300_47775536_47776122_47776279_47777873_47778027_47780367
21918	chr2	-	1911	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5306	806	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_2	218	491	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATAAAGCTGTGTATCT	NA	False	NA	NA	False	NA	NA	NA	176964135	176955640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176957402_176958542_176958604_176964046
21919	chr9	-	4064	28	NNC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	-3	574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	247.22544872357	1	123	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACGGTTTTCAGGCAAT	8325	False	NA	NA	False	NA	NA	NA	95393915	95342456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373357_95373440_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382851_95384592_95384638_95393869
21920	chr5	+	3919	24	NNC	ENSMUSG00000005907.15	novel	4555	24	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	24.1538859800966	3	73	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGACTGGAAAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	3646370	3686967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_3646518_3653231_3653376_3654792_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683907_3685343_3685513_3685779_3685911_3686770
21921	chr2	+	2146	3	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-11	-6	intron_retention	FALSE	canonical	3	2861	junction_1	1322	13	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26800843_26801017_26802814_26802999
21922	chr7	+	1877	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	262	2353	-68	1099	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGATAGGTATATTCTGT	NA	False	NA	NA	False	NA	NA	NA	83541469	83548387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
21924	chr4	+	2412	6	Antisense	novelGene_ENSMUSG00000096065.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCACTAGTCTCCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	147696405	147726909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147697517_147697605_147698506_147699736_147699877_147702873_147702956_147725368_147725466_147726827
21925	chr5	+	2537	16	NIC	ENSMUSG00000005514.15	novel	918	8	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	64.9938116712319	557	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	1600	False	NA	NA	False	NA	NA	NA	135698852	135764180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135698971_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
21926	chr5	+	2799	16	NNC	ENSMUSG00000028973.19	novel	3074	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	50.1911900193207	297	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGACTAGGCTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	24599404	24615052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24599582_24604910_24605224_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
21927	chr5	-	4709	25	FSM	ENSMUSG00000029191.17	ENSMUST00000204965.3	4751	25	31	11	-18	-11	multi-exon	FALSE	canonical	3	270	junction_12	80.615847887097	1	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAACCTGAGCGTACTGA	5	False	NA	NA	False	NA	NA	NA	65492982	65419205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
21929	chr3	-	2406	7	Antisense	novelGene_ENSMUSG00000039756.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	164	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCCCGGCAGCCAGCGC	NA	False	NA	NA	False	NA	NA	NA	122078916	122068055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_122068126_122068844_122070460_122072394_122072532_122074374_122074472_122075976_122076140_122078039_122078151_122078703
21930	chrX	+	1347	2	NNC	ENSMUSG00000001962.9	novel	1918	11	NA	NA	16	-3237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGGAAGCAGAGCTCAAG	215	False	NA	NA	False	NA	NA	NA	73356654	73358334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73357149_73357481
21932	chr18	+	2580	22	NNC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	12	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	250.347549801491	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATAAGCATAATGCC	-23	True	NA	NA	False	NA	NA	NA	3382999	3435397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843_3434976_3435250
21933	chr11	-	3280	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	-43	-132	-43	-2	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	216	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATTTCTTGGAGCAAGAA	7392	False	NA	NA	False	NA	NA	NA	97657425	97636308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
21934	chr2	-	2573	15	NIC	ENSMUSG00000027634.15	novel	2586	16	NA	NA	-26	-3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_13	42.7715812574811	453	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCCGGCTGCTGGTGTTA	5888	False	NA	NA	False	NA	NA	NA	156834002	156769267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156811956_156812059_156833918
21937	chr8	+	3229	4	Antisense	novelGene_ENSMUSG00000037251.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	117	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTCAAAAGAAAAATACAAAT	NA	False	NA	NA	False	NA	NA	NA	26471452	26479769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_26473671_26476271_26476557_26477518_26477669_26479193
21938	chr12	-	3515	12	NNC	ENSMUSG00000021190.15	novel	1990	14	NA	NA	131	-3	intron_retention	FALSE	canonical	0	0	junction_5	141.201982988908	9	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACTCTGGCTTTGTGGT	7620	False	NA	NA	False	NA	NA	NA	102405941	102360345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102366516_102368143_102368192_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
21939	chr2	-	675	6	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-1309	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5142.91813662244	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGCTAATCACCATTGA	3736	False	NA	NA	False	NA	NA	NA	154734751	154714646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719637_154730110_154730281_154734609
21940	chr2	-	3587	13	FSM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	9	0	9	0	multi-exon	FALSE	canonical	3	151	junction_8	19.1534374634598	293	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGCCTTGTCCTTT	8815	False	NA	NA	False	NA	NA	NA	157988347	157958321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_157959872_157960766_157960904_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250_157973429_157974348_157974478_157976170_157976290_157980626_157980870_157984914_157985095_157988210
21941	SIRV5	+	1561	16	NNC	SIRV5A	novel	1890	17	NA	NA	-2	-2488	intron_retention	FALSE	canonical	0	0	junction_4	3379.64967546769	2	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAAAACGCGGTGCCCT	NA	False	NA	NA	False	NA	NA	NA	1054	8501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3597_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454
21942	chr13	-	3814	7	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-19287	140055	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	98.2666440524624	88	48	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGGTTTCTCTGGAGTTA	NA	False	NA	NA	False	NA	NA	NA	65787344	65623582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65623686_65759055_65761711_65761787_65762285_65763699_65763903_65764103_65764190_65765670_65765887_65787290
21944	chr10	-	1890	13	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	407.49303845451	5	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	85793627	85774500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_85774876_85774934_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
21945	chr5	-	3342	2	Genic_Genomic	ENSMUSG00000029191.17	novel	4689	25	NA	NA	-28340	12398	multi-exon	TRUE	non_canonical	0	0	junction_1	0	220	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGAATCCCATCCCCAGT	NA	False	NA	NA	False	NA	NA	NA	65459350	65455915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_65457261_65457353
21946	chr7	+	3719	19	FSM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	8	-1117	8	1117	multi-exon	FALSE	canonical	2	65	junction_12	24.7032386540712	317	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAATTAAAGAAGTGACAAG	NA	False	NA	NA	False	NA	NA	NA	35096487	35139231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
21947	chr19	+	2077	17	NNC	ENSMUSG00000024735.14	novel	2134	16	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.5463293540305	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	10872625	10882896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10872716_10872798_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
21948	chr5	-	2036	11	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	79	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	463.976734330505	4	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGGGTCTCTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	24782386	24770340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773211_24776188_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
21949	chr1	+	3707	9	NIC	ENSMUSG00000026305.16	novel	3645	8	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_5	16.4088390814219	116	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTACTGGTTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	90981185	91045037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91042317
21950	chr2	+	2487	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	141	1	intron_retention	FALSE	canonical	0	0	junction_10	947.827642559553	1	100	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116552	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119235_130119395_130119545_130119768_130119891_130120075_130120206_130120332
21951	chr1	+	3116	4	ISM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	2030	-178	2012	178	intron_retention	FALSE	canonical	3	441	junction_3	4.24264068711928	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACGTTTTACGATATAGC	NA	False	NA	NA	False	NA	NA	NA	171956351	171963028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_171956888_171957468_171957555_171958178_171958341_171960696
21953	chr5	+	1779	2	ISM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	15177	0	15177	0	3prime_fragment	FALSE	canonical	3	608	junction_1	0	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGGTCTTTTCTAT	919	False	NA	NA	False	NA	NA	NA	143404769	143407656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_143405448_143406555
21955	chr1	-	2053	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	110	12	110	-12	multi-exon	FALSE	canonical	3	1712	junction_8	135.919976456737	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTACAGCTGATGATAGTG	NA	False	NA	NA	False	NA	NA	NA	128344986	128291455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
21956	chr2	-	3271	5	NNC	ENSMUSG00000044627.12	novel	775	5	NA	NA	-3	0	intron_retention	FALSE	canonical	2	6	junction_2	1542.88955777787	25	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32178084	32168827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32170816_32171697_32171823_32176443_32177511_32177608_32177658_32178042
21957	chrX	-	2266	14	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	-6	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	255.18003854339	43	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTGAGATGAGGGATG	NA	False	NA	NA	False	NA	NA	NA	95000525	94978927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984161_94984443_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
21958	chr4	+	3911	17	FSM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	0	2	0	-2	multi-exon	FALSE	canonical	3	98	junction_7	17.9965274428152	258	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGGCTTTCATTCCTG	NA	False	NA	NA	False	NA	NA	NA	141028550	141056693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_141028746_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
21959	chr15	-	1495	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1372	13	1245	-13	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	5	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAAAGAGTTTTGTTT	1403	False	NA	NA	False	NA	NA	NA	98831074	98829318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
21962	chr2	+	2408	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	141	64	137	-64	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGTGAAAAGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	34662247	34666479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
21963	chr8	+	829	1	Antisense	novelGene_ENSMUSG00000002949.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATCAGCACTGGGCCCT	NA	False	NA	NA	False	NA	NA	NA	4309748	4310577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_4309700_4310600
21964	chr6	-	1685	5	NNC	ENSMUSG00000030057.16	novel	2178	5	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_2	4595.07249670775	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828030	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822335_87822446_87822540_87822637_87822776_87827885
21965	chr4	-	2957	8	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	2273	5	518	-5	3prime_fragment	FALSE	canonical	3	1168	junction_5	184.331002187226	1	111	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGTGTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	141323262	141303377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
21966	chr9	-	7431	19	NNC	ENSMUSG00000025241.17	novel	7692	18	NA	NA	20	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9.37638878602347	40	27	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGAGTAGCATTGTCT	9348	False	NA	NA	False	NA	NA	NA	123680926	123618575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_123620851_123621072_123621815_123623789_123623900_123626581_123626793_123630286_123630383_123648111_123648257_123651382_123651595_123652242_123652393_123654570_123654739_123655610_123655730_123656149_123656243_123657240_123659545_123660351_123660443_123662162_123662307_123663857_123663965_123667936_123668063_123669606_123669714_123672523_123672674_123680845
21967	chr1	+	4095	5	ISM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	135381	4	-3096	-4	3prime_fragment	FALSE	canonical	3	59	junction_1	77.8985718739439	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTAGAGTCTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	152966129	152995003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313
21968	chr12	+	3800	6	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	29	-75	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	313.743207097779	1	186	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACTACATGCCCTGGGA	NA	False	NA	NA	False	NA	NA	NA	86516919	86568324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553289_86561064_86561331_86565594
21969	chr11	-	2925	10	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGAACCCAATACGCACT	NA	False	NA	NA	False	NA	NA	NA	78206099	78192426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78192535_78192718_78192845_78194869_78195866_78195967_78196146_78203939_78204014_78204171_78204265_78204336_78205083_78205168_78205281_78205528_78205935_78206013
21970	chr12	+	2031	14	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	225	-3	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	274.885193894624	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAAAAAAAGTGTGAAGTA	361	False	NA	NA	False	NA	NA	NA	109604278	109628140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109604361_109608998_109609087_109609847_109609896_109611695_109611766_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
21972	chr9	+	2310	16	NNC	ENSMUSG00000045594.11	novel	2806	15	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_3	143.315967940305	130	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGTCCTGTCATTAAT	NA	False	NA	NA	False	NA	NA	NA	114230175	114303446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114249420_114249572_114249936_114250052_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
21974	chr1	+	3712	17	FSM	ENSMUSG00000025915.15	ENSMUST00000097826.6	2728	17	8	-992	8	0	multi-exon	FALSE	canonical	3	32	junction_1	27.8654692226777	104	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGGACTATTTCATGCT	9947	False	NA	NA	False	NA	NA	NA	9918629	9971070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_9918774_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
21975	chr8	+	3534	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	88	17	55	-17	multi-exon	FALSE	canonical	0	0	junction_1	271.645643020279	36	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTCCAGAGTGGTGACTG	NA	False	NA	NA	False	NA	NA	NA	86219292	86254172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
21976	chr6	-	3314	8	NNC	ENSMUSG00000053907.11	novel	3387	8	NA	NA	64	3	intron_retention	FALSE	canonical	0	0	junction_3	292.06527087105	1	145	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416459	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72412098_72412188_72412372_72412793_72413013_72413175_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
21977	chr12	+	2262	11	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	10	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	107.488417980729	23	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATGTTCTCAAACAGGG	NA	False	NA	NA	False	NA	NA	NA	85157641	85180845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166128_85176565_85176640_85177233_85177318_85177670_85177839_85179392
21978	chr18	-	2157	9	Antisense	novelGene_ENSMUSG00000024576.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTCCCCGGGAGCCGCTT	4982	False	NA	NA	False	NA	NA	NA	61721370	61688384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61688943_61689571_61689683_61702533_61702631_61708477_61708619_61709575_61709655_61710246_61710322_61711735_61711837_61713401_61713521_61720494
21979	chr11	-	2009	12	FSM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	26	-389	0	389	multi-exon	FALSE	canonical	3	608	junction_5	45.2577558304642	2961	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGGCTCTAACATTCTT	NA	False	NA	NA	False	NA	NA	NA	59730638	59708231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
21982	chr17	+	3435	21	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	6	-1	intron_retention	TRUE	non_canonical	0	0	junction_5	47.6550102297754	1	54	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	45817772	45831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820463_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
21983	chr12	+	3194	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7402	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	46.2909728420852	276	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGCTGGTGCCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	81066179	81233183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_81066267_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
21984	chr6	+	4826	13	NIC	ENSMUSG00000001632.17	novel	4773	14	NA	NA	-2	-15	intron_retention	FALSE	canonical	3	53	junction_1	40.4580544102984	66	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGATTCTTAGAAAATAAAG	285	False	NA	NA	False	NA	NA	NA	113284150	113301787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113294153_113294508_113294638_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113298827_113298928_113299048_113299373_113299529_113300943
21985	chr14	+	2674	8	NNC	ENSMUSG00000021806.5	novel	3976	17	NA	NA	-346	-25857	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	527.969812062186	6	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGCATACGGTATAATT	NA	False	NA	NA	False	NA	NA	NA	19800986	19830341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19830181
21986	chr15	+	1698	14	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-22	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	488.932407811432	3	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959425	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78973949_78974140_78974162_78977536_78977618_78978400
21988	chr4	+	2971	12	FSM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	13	-1429	7	975	multi-exon	FALSE	canonical	3	567	junction_7	49.9305302519377	1627	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAAATACTGGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	116876611	116945478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
21989	chr8	+	2890	17	NNC	ENSMUSG00000031985.10	novel	2984	16	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.921544390023	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTATACCCAATGGTCTTA	5164	False	NA	NA	False	NA	NA	NA	125589815	125616791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_125589932_125589976_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
21990	chr19	-	1777	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-20	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1154.09673134713	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCATTGCCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	15902314	15882494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894528_15896804_15896889_15898299_15898361_15902227
21992	chr2	+	1774	6	NNC	ENSMUSG00000017721.16	novel	2562	12	NA	NA	1198	-17	intron_retention	FALSE	non_canonical	0	0	junction_5	24.2206523446418	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCAGCCTTCCTAGGT	8706	False	NA	NA	False	NA	NA	NA	164343033	164350204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349527_164349750
21993	chr17	+	2691	7	NNC	ENSMUSG00000023902.19	novel	2609	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	105.164949801094	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	888	False	NA	NA	False	NA	NA	NA	23819838	23829986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_23819934_23824380_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
21994	chrX	-	1628	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGTGTGGTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	135642101	135633695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135633893_135634129_135635251_135636294_135636372_135640553_135640644_135641958
21995	chr7	+	2761	3	FSM	ENSMUSG00000025508.14	ENSMUST00000137307.2	465	3	-18	-2278	-18	-44	multi-exon	FALSE	canonical	3	11307	junction_1	1844.5	26	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTCCTGCTCCCCTGCA	2398	False	NA	NA	False	NA	NA	NA	141027563	141031218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_141027621_141027820_141027945_141028638
21996	chrX	-	3146	8	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-7	753	intron_retention	FALSE	canonical	3	1767	junction_4	163.838646359204	4	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCCATAAAAATTCAATAT	NA	False	NA	NA	False	NA	NA	NA	72974369	72968115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72969954_72971418_72971595_72971884_72971967_72972721_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
21997	chrX	+	1590	10	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	1	42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	962.717565598089	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTTCTTTTAGAAGA	NA	False	NA	NA	False	NA	NA	NA	161543398	161561794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543654_161552777_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
21998	chr17	-	2827	11	Intergenic	novelGene_108	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	280	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGAGCCCGCTGCCAACGC	NA	False	NA	NA	False	NA	NA	NA	26875908	26780529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_26780605_26787636_26787771_26827562_26827628_26833327_26833403_26843563_26843657_26848526_26848652_26853388_26853490_26854953_26855021_26857716_26857816_26860553_26860679_26874040
21999	chr11	+	1551	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	3	-17548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	41	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATCTTCCTATTTA	9434	False	NA	NA	False	NA	NA	NA	88861080	88864232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861172_88861243_88861855_88863383
22000	chr6	-	3893	14	NNC	ENSMUSG00000005069.13	novel	3139	16	NA	NA	-989	-17	intron_retention	FALSE	canonical	2	3	junction_13	33.5022740551131	1	69	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTATGAAGAATAAACTG	NA	False	NA	NA	False	NA	NA	NA	124393015	124373807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124392790
22001	chr2	-	3958	6	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.4	1	132	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTAGAATACAAGGGCACA	7014	False	NA	NA	False	NA	NA	NA	162925430	162914543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162917696_162919713_162919807_162921511_162921623_162922637_162922734_162924461_162924618_162925080
22004	chr13	-	2825	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	245	229	245	-3	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	2	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTCTGTCTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	111626317	111562694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
22005	chr9	+	2856	14	FSM	ENSMUSG00000015357.11	ENSMUST00000015501.11	2885	14	12	17	12	-17	multi-exon	FALSE	canonical	3	317	junction_12	30.6779414999533	331	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTTTTTCTAAAGTCCT	6163	False	NA	NA	False	NA	NA	NA	65201553	65237922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
22006	chr8	-	2045	13	ISM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	14473	465	-10263	-1	3prime_fragment	FALSE	canonical	3	999	junction_6	174.997857129737	87	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCAGTCATGCATGCT	NA	False	NA	NA	False	NA	NA	NA	41813337	41793698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289
22010	chr17	-	2382	12	NIC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-110	-1	intron_retention	FALSE	canonical	3	510	junction_7	62.0997597844731	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGTGTGCGAGTCATC	NA	False	NA	NA	False	NA	NA	NA	57318398	57310405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314907_57316687_57316761_57317975_57318023_57318108
22011	chr7	+	2926	14	NNC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	388.982803349679	2	97	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACACTGTTTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	79944215	79966003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954344_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959142_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
22012	chr5	+	2121	12	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	415.229200871276	13	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTGTGTGCTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	111478623	111536223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368_111535274_111535916
22013	chr9	-	2402	15	NNC	ENSMUSG00000000168.11	novel	4035	14	NA	NA	276	748	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	332.372792913902	13	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTTGTAGAAGTGGAGCT	NA	False	NA	NA	False	NA	NA	NA	50570804	50547079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490_50570533_50570742
22014	chr8	-	1850	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.000212856448	1	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615029	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591543_96591695_96591880_96593448_96593600_96596099_96596266_96597402_96597414_96598938_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
22017	chr4	-	2632	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	73	0	73	0	multi-exon	TRUE	canonical	3	663	junction_8	52.1791784782653	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120427400	120397064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
22018	chr8	+	2836	23	NIC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_8	145.434380704526	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	108163002	108283845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
22019	chr17	-	1987	10	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	8	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	335.722475039896	6	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCTTGTCAGTGAG	NA	False	NA	NA	False	NA	NA	NA	13179599	13161926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13162643_13162720_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
22021	chr13	-	4228	15	FSM	ENSMUSG00000021668.16	ENSMUST00000022172.12	4225	15	-2	-1	-2	1	multi-exon	FALSE	canonical	3	26	junction_7	5.85191404236116	85	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATTGACTGTCATATT	NA	False	NA	NA	False	NA	NA	NA	96678995	96617196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_96618763_96618965_96619000_96619998_96620914_96623315_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
22022	chr9	+	4202	9	ISM	ENSMUSG00000032076.21	ENSMUST00000114547.8	4444	10	257712	-5	257596	0	3prime_fragment	FALSE	canonical	3	143	junction_7	61.313614923604	212	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTAAATCTCTTTCTGG	1846	False	NA	NA	False	NA	NA	NA	47699266	47764683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47759464_47759597_47761569
22025	chr1	+	5150	10	NIC	ENSMUSG00000026349.15	novel	4511	10	NA	NA	54	383	combination_of_known_junctions	FALSE	canonical	3	50	junction_6	159.507575577672	1	190	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGACTCATTCTTAAGGT	NA	False	NA	NA	False	NA	NA	NA	127701954	127734052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725934_127727126_127727291_127729342_127729414_127729898_127731031_127731128
22026	chr13	-	2178	11	Antisense	novelGene_ENSMUSG00000113894.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAGCAGGGAGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	3615805	3588135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3588349_3598863_3598971_3600988_3601088_3604410_3604547_3606313_3606513_3606925_3607066_3609991_3610090_3611863_3612036_3614537_3614685_3614858_3614910_3614989
22027	chr2	+	4134	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	70	9	2	-9	multi-exon	FALSE	canonical	3	103	junction_4	11.7997616501351	190	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAACACAGGCGTGATG	1130	False	NA	NA	False	NA	NA	NA	167774316	167821296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
22028	chr11	+	961	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-27	-17540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.918719168644	3665	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9404	False	NA	NA	False	NA	NA	NA	88861050	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861060_88861243_88861306_88861723_88861820_88863446
22029	chr9	+	2510	17	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAAACCACGGCCGCGGG	NA	False	NA	NA	False	NA	NA	NA	61831553	61853983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61832093_61832250_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61839081_61839204_61839355_61839472_61842662_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851613_61852631_61852701_61853892
22031	chr2	+	2792	17	NIC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	22	-193	combination_of_known_splicesites	FALSE	canonical	3	9	junction_10	43.9871696492284	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGTAAGAAGAGTAAATT	NA	False	NA	NA	False	NA	NA	NA	132658082	132685622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
22032	chr15	-	2881	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	19	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	53.8380244062904	163	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	NA	NA	NA	100320917	100285778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100286319_100286443_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
22033	chr18	+	3618	13	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	-87	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	511.17894779291	1	168	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTAGGTCATGTTGAT	1676	False	NA	NA	False	NA	NA	NA	35704892	35724472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35705989_35710610_35710681_35711957_35712059_35712312_35712365_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715897_35716943_35716975_35717567_35717935_35720683_35720897_35721384_35721507_35723454
22034	chr11	-	2584	17	NIC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	100	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_16	70.9101268772663	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3757	False	NA	NA	False	NA	NA	NA	54846773	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846673
22035	chr10	+	3711	16	Fusion	ENSMUSG00000020250.12_ENSMUSG00000056821.14	novel	894	3	NA	NA	38	-2	intron_retention	FALSE	canonical	0	0	junction_1	304.483971481076	5	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACGCGTGCCTTCTGACT	NA	False	NA	NA	False	NA	NA	NA	82647994	82733542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_82648238_82654864_82654958_82708670_82708847_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
22036	chr3	+	2133	8	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_1	2435.73581892451	3	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAACCACAGGCTGGTTA	NA	False	NA	NA	False	NA	NA	NA	121220193	121251850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121229521_121229656_121243597_121243720_121243940_121244008_121245031_121245174_121245531_121245649_121248595_121248743_121250730
22037	chr10	-	1685	9	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	8	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	750.24262742129	39	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTTAATGTGTATGGT	NA	False	NA	NA	False	NA	NA	NA	93725662	93696783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698274_93704738_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
22038	chr1	+	3122	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	6	-1933	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	98.5721675840712	5	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATGTTAATTGTAATTG	NA	False	NA	NA	False	NA	NA	NA	190795214	190816738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_190795470_190797371_190797451_190801452_190801616_190802186_190802318_190803374_190803430_190812685_190812754_190814367
22039	chr6	-	2663	11	FSM	ENSMUSG00000035378.18	ENSMUST00000170667.8	1990	11	-3	-670	-3	670	multi-exon	FALSE	canonical	0	0	junction_2	64.1530201939083	628	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAAGCCTCTGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	100648121	100549372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
22041	chr2	+	2560	4	FSM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	-15	3	-15	-3	multi-exon	FALSE	canonical	3	497	junction_2	8.2192186706253	608	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTGTGTGTAATGGCA	NA	False	NA	NA	False	NA	NA	NA	53082084	53109229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_53082535_53084295_53084350_53092930_53093064_53107306
22042	chr13	-	1931	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2933.47995265914	2	57	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTATTTTTGGTGGTCTT	4800	False	NA	NA	False	NA	NA	NA	58550281	58539769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541599_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545562_58545611_58546969_58547027_58547706_58547805_58548142_58548232_58550206
22043	chr2	+	2621	4	NNC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	19	2112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	42.4970587217516	2	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTAGAAACAATTATGG	3392	False	NA	NA	False	NA	NA	NA	91541216	91554002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_91541321_91542424_91543211_91550698_91551761_91553333
22045	chr11	+	3454	10	ISM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	4690	2	-3646	-2	3prime_fragment	FALSE	canonical	3	1895	junction_2	118.17198180597	8	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGGTTTTGAGAGGTT	NA	False	NA	NA	False	NA	NA	NA	69475874	69482696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
22046	chr6	-	2414	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	144	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1229.0432091672	2	102	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAACTCTGGATTTGAAT	8629	False	NA	NA	False	NA	NA	NA	145021766	144944884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993093_145021614
22047	chr9	-	4147	18	NNC	ENSMUSG00000086728.3	novel	452	2	NA	NA	2755	5515	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	181	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCAGGGATACATTTCAGA	NA	False	NA	NA	False	NA	NA	NA	57035427	57001718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57001830_57002584_57002864_57004003_57004255_57005106_57005262_57005388_57005549_57008402_57008490_57011151_57011273_57011877_57012083_57012856_57012978_57014635_57014875_57015989_57016174_57017860_57018437_57020829_57020997_57024662_57024838_57025351_57025460_57026391_57026464_57032450_57032580_57034420
22048	chr8	+	2619	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	450.483334181188	1	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGATAGTAGTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	75836203	75854314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836719_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
22049	chr5	-	2174	8	Antisense	novelGene_ENSMUSG00000105742.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	356	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACAAGATGGCCGCCGA	NA	False	NA	NA	False	NA	NA	NA	122313328	122296403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_122296435_122296573_122296677_122306235_122306369_122306980_122307211_122309882_122309999_122310803_122311017_122311206_122311342_122312115
22050	chr15	+	2972	7	NNC	ENSMUSG00000009585.19	novel	2765	8	NA	NA	0	-27	intron_retention	FALSE	non_canonical	0	0	junction_6	298.711910635575	3	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAATAAAGTGGACA	8292	False	NA	NA	False	NA	NA	NA	79776649	79792260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79790804_79791051_79791769_79791825
22051	chr4	-	4395	3	FSM	ENSMUSG00000045973.19	ENSMUST00000107796.8	4433	3	38	0	12	0	multi-exon	FALSE	canonical	3	68	junction_2	5.5	326	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCGGTTGCTCTTTGGAG	21	True	NA	NA	False	NA	NA	NA	45408723	45395922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_45400180_45404726_45404836_45408694
22052	chr8	+	2736	2	Intergenic	novelGene_1630	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	43	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAGAGGAAAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	43597923	43601236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43598562_43599138
22053	chr8	+	499	1	Intergenic	novelGene_1631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGTTTGTGAGCCACCAT	NA	False	NA	NA	False	NA	NA	NA	43601446	43601945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43601400_43601900
22054	chr17	-	2727	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-4	-1302	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	210.248801646407	1	74	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCCCTTCAGCCTAGGGA	8733	False	NA	NA	False	NA	NA	NA	24470325	24442473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468313_24470247
22057	chrX	+	2316	16	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	33	2	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	394.114004938785	8	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	NA	False	NA	NA	NA	154045533	154080644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_154045671_154046363_154047090_154052654_154052750_154054947_154054994_154056028_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
22058	chrX	-	1297	5	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	29	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCGAAGCTCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	100492188	100487915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100487966_100488291_100488396_100488899_100488939_100489719_100489834_100491198
22059	chr7	+	3727	19	FSM	ENSMUSG00000039361.12	ENSMUST00000207225.2	3489	19	281	-519	-1	348	multi-exon	FALSE	canonical	3	87	junction_13	27.4656350938971	354	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTTTTAAATTAAGAAT	NA	False	NA	NA	False	NA	NA	NA	89779701	89858659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
22061	chr4	-	2480	14	NNC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	-10	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	379.95513593771	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122779667	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122753693_122753772_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759098_122761302_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779625
22062	chr1	-	2595	19	NNC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	232.053906306485	4	68	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAAAAACACTGATATTAA	NA	False	NA	NA	False	NA	NA	NA	63215973	63182764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187683_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
22063	chr4	-	2454	4	FSM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	5	1	5	-1	multi-exon	FALSE	canonical	3	80	junction_3	9.80929264637478	468	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTTGTTGGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	144135029	144118244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_144119688_144121144_144121730_144122249_144122573_144134926
22064	chr1	+	3813	11	NIC	ENSMUSG00000018189.13	novel	1696	11	NA	NA	-22	-6	intron_retention	FALSE	canonical	3	124	junction_9	472.754280784426	5	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAGTTTCTTGGATTAT	NA	False	NA	NA	False	NA	NA	NA	143652987	143683037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
22065	chr15	+	3346	21	NIC	ENSMUSG00000033065.15	novel	2879	23	NA	NA	99	2	intron_retention	FALSE	canonical	0	0	junction_1	25.7477668934609	7	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTTGGGCGCTCTTGT	1695	False	NA	NA	False	NA	NA	NA	98006445	98030324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020620_98020732_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
22066	chr14	+	2625	17	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	-49	-273	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	314.851694999011	14	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCATTGTATCACTCCCT	NA	False	NA	NA	False	NA	NA	NA	122344500	122396743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382640_122384138_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392891_122396133
22067	chrX	-	5183	5	Antisense	novelGene_ENSMUSG00000031365.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	38	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCCCGGCAGCGCGTT	NA	False	NA	NA	False	NA	NA	NA	72401607	72386248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72386356_72388440_72388517_72395412_72395528_72396439_72396543_72396825
22068	chr14	+	3628	12	NIC	ENSMUSG00000035469.18	novel	852	3	NA	NA	1229	-1	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	88.9482159684327	1	92	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGCACACTTGTACAGTT	3319	False	NA	NA	False	NA	NA	NA	59444290	59474707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_59444380_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
22069	chr17	+	3951	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	231	14	2	-14	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	3	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTATTTGTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	29171462	29188509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
22070	chr14	-	1633	3	Antisense	novelGene_ENSMUSG00000022010.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGAGGCCGCCCGGCCCC	NA	False	NA	NA	False	NA	NA	NA	76745112	76741953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76742280_76742686_76742737_76743855
22071	chr13	-	4401	16	FSM	ENSMUSG00000021451.17	ENSMUST00000021900.14	4482	16	77	4	3	0	multi-exon	FALSE	canonical	3	95	junction_9	25.4317387005555	173	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTGGGCCAGCCTTTGC	NA	False	NA	NA	False	NA	NA	NA	51947706	51855285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_51857568_51858988_51859033_51859108_51859282_51862910_51863027_51863947_51864171_51865235_51865393_51865484_51865661_51866714_51866867_51867727_51867842_51868829_51868924_51874541_51874641_51876353_51876417_51877578_51877725_51879259_51879579_51917287_51917357_51947532
22073	chr2	+	2195	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	300	7	-57	0	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	1356	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTAAGCTGCAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	167345308	167358086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
22074	chr9	-	2840	11	NIC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	2	11	junction_10	76.4928754852372	21	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCAGCTAACAAAGGCTT	NA	False	NA	NA	False	NA	NA	NA	13738409	13719092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13737837
22075	chr4	+	2296	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	291.561969780392	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTGTGTTCGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	124923819	124949173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124938292_124938394_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
22076	chr9	+	3431	20	NNC	ENSMUSG00000033335.18	novel	3502	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	169.277493501334	1	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGTGTGGGCCTTTTGT	5902	False	NA	NA	False	NA	NA	NA	21336263	21418436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401072_21405816_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
22077	chrX	+	1184	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	92	-66	92	66	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068901	13070085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068900_13070100
22078	chr5	-	1117	9	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-43	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	927.801534542814	34	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTAATAACTCTGTAGA	2277	False	NA	NA	False	NA	NA	NA	138170123	138162856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138164955_138167473_138167541_138167610_138167736_138167821_138167987_138168578_138168588_138169987
22079	chr10	+	2614	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	-7	-5	-7	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	3	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21854563	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
22080	chr9	-	2080	16	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	0	-278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	456.535066196088	1	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGGGGGGGATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	36678895	36643999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644217_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
22082	chr8	-	3079	12	FSM	ENSMUSG00000002949.16	ENSMUST00000149827.8	3041	12	-43	5	-15	-5	multi-exon	FALSE	canonical	3	458	junction_4	34.7196564708602	16	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTTTGAACGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	4325928	4309735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
22085	chr1	+	1903	10	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-19	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	255.298711510194	53	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4878099	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4915529_4916074
22087	chr15	+	1839	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	98	0	98	0	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	NA	False	NA	NA	NA	85220543	85347413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
22089	chr16	-	2005	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	88	0	-88	mono-exon	FALSE	NA	NA	NA	NA	NA	2	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGTTTTATAATGTTTA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
22090	chr8	+	2568	12	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	473.027090238153	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTCTGTGTTTCTGTAA	2139	False	NA	NA	False	NA	NA	NA	13388786	13428445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420168_13420275_13420480_13420647_13420878_13421079_13421351_13421421_13422465_13422618_13422935_13423104_13423844_13423924_13427141
22091	chr14	-	2358	7	NNC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1767.6477464573	2	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGTTAGAAGCTGGTG	8754	False	NA	NA	False	NA	NA	NA	52341456	52311004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52335848_52336002_52341345
22092	chr6	-	1424	4	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	11	-79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4885.54209433872	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTTTGTTTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	87828030	87820142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822303_87822446_87822540_87827894
22094	chr1	+	2506	10	NIC	ENSMUSG00000026199.18	novel	2739	13	NA	NA	-1513	-5	intron_retention	FALSE	canonical	2	42	junction_3	27.5497305671215	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTGTGTGTGTACTTA	2064	False	NA	NA	False	NA	NA	NA	75170823	75176026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75170929_75171484_75171588_75171706_75171901_75172243_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
22096	chr10	+	2448	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	-22	3	-22	-2	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	637	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCTCACTGGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	4382444	4405138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
22097	chr19	-	2058	9	NIC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-34	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	1098.49447398474	3	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCATTGCCTGTGAATTA	236	False	NA	NA	False	NA	NA	NA	15924735	15882491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15924648
22098	chr6	-	1603	13	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2843.16907863782	11	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446825	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439926_51440064_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
22099	chr13	+	3425	12	NIC	ENSMUSG00000062822.9	novel	2795	13	NA	NA	-1	-17	intron_retention	FALSE	canonical	3	76	junction_1	21.4818778131747	90	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGTTTTGAAATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	119599302	119622636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
22100	chr5	+	1906	5	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	5869	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	767.065308497262	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCAGTGCTTCCAGAT	NA	False	NA	NA	False	NA	NA	NA	22004969	22008780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_22005007_22005541_22005638_22006205_22006995_22007340_22007612_22008067
22102	chr11	+	1102	3	Antisense	novelGene_ENSMUSG00002076664.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGTAACTCTTCTCCAAGG	10	True	NA	NA	False	NA	NA	NA	120236518	120237815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120237362_120237464_120237649_120237740
22103	chr6	+	2249	17	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-15	-414	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	319.53168245692	1	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGAGCGCCCCTTCCAGG	5422	False	NA	NA	False	NA	NA	NA	125108856	125121302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125109476_125109528_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
22104	chr10	-	1542	13	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-24	-867	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	574.805619318392	16	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTCGTCAAGCCCCTCTTT	8721	False	NA	NA	False	NA	NA	NA	128401827	128394503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396067_128396111_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
22105	chr1	+	3464	6	NIC	ENSMUSG00000052423.16	novel	2805	6	NA	NA	2	-3	intron_retention	FALSE	canonical	3	46	junction_1	72.5793359021698	2	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTGCTTGTGATTTC	NA	False	NA	NA	False	NA	NA	NA	171097899	171104464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171097985_171098152_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
22106	chr9	-	6197	10	NNC	ENSMUSG00000060510.15	novel	6283	9	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.9524125216	1	195	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTAATGTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	20432663	20406363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20409182_20409217_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
22107	chrX	+	1214	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	163	141	99	-141	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGGGCCTATGTACAAA	NA	False	NA	NA	False	NA	NA	NA	99538059	99559590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
22109	chr14	+	3772	16	NNC	ENSMUSG00000021901.11	novel	3460	17	NA	NA	1	-4	intron_retention	FALSE	canonical	0	0	junction_10	101.044192751929	14	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCTTCTGGTTGCTATC	NA	False	NA	NA	False	NA	NA	NA	30973468	30981883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978620_30978749_30979245_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
22110	chr4	+	2331	5	NIC	ENSMUSG00000028797.21	novel	875	6	NA	NA	-3	1	intron_retention	FALSE	canonical	3	57	junction_2	278.30502600564	18	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGCTTAGCAAATGTT	3173	False	NA	NA	False	NA	NA	NA	129494469	129502315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129494525_129494775_129495037_129495199_129496055_129500879_129500973_129501248
22111	chr19	-	3572	25	NIC	ENSMUSG00000039901.11	novel	3676	26	NA	NA	-13	0	combination_of_known_splicesites	TRUE	canonical	2	7	junction_1	39.5213549868928	94	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGTCTCGTTAGTGTC	6634	False	NA	NA	False	NA	NA	NA	45986940	45805802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_45807418_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
22112	chr1	+	2297	15	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-6	-254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	744.864074711567	2	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAGATTTTCTTTTTTA	3136	False	NA	NA	False	NA	NA	NA	180396482	180428563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180417102_180417159_180418782_180418912_180420412_180420451_180421624_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
22113	chr2	+	1526	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	10	0	-1	0	multi-exon	FALSE	canonical	3	200	junction_1	20.9105236663265	241	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGACCAAAGTTTCTTAC	599	False	NA	NA	False	NA	NA	NA	32647255	32652256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
22114	chr1	-	1954	5	ISM	ENSMUSG00000043716.14	ENSMUST00000149566.2	838	6	-179	-485	-4	0	intron_retention	FALSE	canonical	3	6432	junction_2	363.276754004437	50	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16174630	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733
22115	chr15	+	1938	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	-265	3	-69	0	multi-exon	FALSE	canonical	3	554	junction_1	173.470458580128	950	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGTGTGATGGCTC	NA	False	NA	NA	False	NA	NA	NA	103181071	103208292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
22117	chr16	-	2241	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	77	2	25	-2	multi-exon	FALSE	canonical	3	963	junction_15	112.803285922348	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAGACGTTTTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	3895614	3857836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
22118	chr19	+	1789	15	ISM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	2357	22	-1057	4	3prime_fragment	FALSE	canonical	3	125	junction_5	13.9109778995745	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGCTACACAGTA	NA	False	NA	NA	False	NA	NA	NA	10874951	10882874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
22119	chr13	+	2284	16	Intergenic	novelGene_1313	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGGAACGCACGAGGAACC	NA	False	NA	NA	False	NA	NA	NA	9022677	9046038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_9023291_9024184_9024343_9024979_9025045_9027269_9027470_9028561_9028665_9029464_9029516_9029936_9030015_9035244_9035352_9035671_9035771_9037288_9037351_9037791_9037982_9039086_9039180_9040731_9040837_9041752_9041888_9042680_9042851_9045983
22120	chr8	+	3014	6	NNC	ENSMUSG00000031770.17	novel	1952	8	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	218.491555900909	1	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTAGCAGAGACTCCCAT	NA	False	NA	NA	False	NA	NA	NA	95113122	95121981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95113367_95115983_95116062_95116148_95116219_95117345_95117477_95118801_95120530_95121218
22121	chr15	-	4221	1	Antisense	novelGene_ENSMUSG00000022587.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGGAGCACAGATGGCG	9916	False	NA	NA	False	NA	NA	NA	74831705	74827484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_74827500_74831700
22122	chrX	-	3275	15	Antisense	novelGene_ENSMUSG00000031337.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	85	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGCTCAGCTCCGGAGC	6241	False	NA	NA	False	NA	NA	NA	70358841	70258659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_70258687_70274994_70275068_70276677_70276748_70278454_70278551_70297854_70297968_70303330_70303430_70328202_70328287_70330753_70330906_70335349_70335542_70339767_70339954_70343171_70343381_70345339_70345431_70346104_70346219_70351303_70351483_70357251
22124	chr7	-	4203	4	FSM	ENSMUSG00000030393.9	ENSMUST00000032551.8	4199	4	0	-4	0	4	multi-exon	TRUE	canonical	3	55	junction_1	5.43650214343336	86	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTATTAAGACTTCATT	NA	False	NA	NA	False	NA	NA	NA	10229321	10221151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_10224936_10226205_10226333_10228416_10228456_10229068
22125	chr15	+	1972	13	NIC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	-1	169	combination_of_known_splicesites	FALSE	canonical	2	24	junction_1	289.744379678978	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTGCTCCACCATGCC	NA	False	NA	NA	False	NA	NA	NA	80832716	80853489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80832847_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
22126	chr13	+	3807	17	NNC	ENSMUSG00000021756.13	novel	8678	17	NA	NA	7	855	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	95.059767383473	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGCAGTCCCAGAACACAC	NA	False	NA	NA	False	NA	NA	NA	112600652	112641934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616689_112617957_112618079_112624242_112624404_112625037_112625193_112627016_112627177_112630122_112630206_112631112_112631324_112631723_112631907_112633818_112633921_112634255_112634403_112635282_112635424_112637646_112637744_112639324_112639407_112640238
22127	chr4	-	1513	5	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	848.479817084649	28	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	7	True	NA	NA	False	NA	NA	NA	41098175	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41098118
22130	chr11	+	2317	10	NIC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	718	2	intron_retention	FALSE	canonical	3	997	junction_4	83.5344240418284	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCAAGGCTCCTTTCCT	2352	False	NA	NA	False	NA	NA	NA	120676058	120679925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678808_120678887_120678969_120679069_120679208_120679287
22133	chr5	+	3146	17	ISM	ENSMUSG00000014668.16	ENSMUST00000112519.9	3159	18	128	1	52	1	3prime_fragment	FALSE	canonical	3	248	junction_1	37.1289454974148	8	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTGTTGTACTCCTGT	NA	False	NA	NA	False	NA	NA	NA	110283842	110319836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
22134	chr19	+	3744	11	NIC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-2	-12	intron_retention	FALSE	canonical	0	0	junction_9	288.050967712313	1	186	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGGTTCCTAATGTGTT	242	False	NA	NA	False	NA	NA	NA	46064406	46073955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46064589_46067141_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071803_46071958_46072066_46072189_46072283_46072450
22135	chrX	+	1306	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-28	-68	-28	68	mono-exon	FALSE	NA	NA	NA	NA	NA	19	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068781	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
22137	chr8	-	2004	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	57	-17	57	17	multi-exon	TRUE	canonical	3	690	junction_2	21.3822356174466	2259	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGCTGAGCTTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	65186769	65171155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
22138	chr15	-	2796	21	ISM	ENSMUSG00000022350.8	ENSMUST00000022976.6	4033	29	14741	4	-6897	-4	3prime_fragment	FALSE	canonical	3	371	junction_18	45.2778919562296	1	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACTGAGTTGCCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	59231275	59203849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111
22139	chr17	-	2553	16	NIC	ENSMUSG00000052752.16	novel	2504	20	NA	NA	-1797	-7	intron_retention	FALSE	canonical	3	368	junction_11	45.8078110757931	1	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGACTGTGGTTGTGGAG	2134	False	NA	NA	False	NA	NA	NA	24735509	24727834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478
22142	chr11	+	1975	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	3	186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1897.46499527238	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940641	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940946_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951683_22952166_22952402_22952816_22952931_22953136
22143	chr13	+	3846	6	NNC	ENSMUSG00000074867.5	novel	355	4	NA	NA	-99480	6074	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8.23164625090267	7	199	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACTCGTTAAAAAAATGAT	NA	False	NA	NA	False	NA	NA	NA	62178219	62390032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62178307_62351245_62351373_62381382_62381444_62382774_62385626_62389181_62389734_62389864
22144	chr7	-	1911	7	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	897.784201365909	7	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGAACCCTTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	117728797	117718133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117719362_117719513_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
22146	chr3	+	1920	6	NNC	ENSMUSG00000053931.12	novel	2214	6	NA	NA	22	0	intron_retention	FALSE	non_canonical	0	0	junction_2	2128.37220429135	1	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	121220167	121251848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243597_121243688_121245031_121245170_121245531_121245649_121248595_121248743_121250730
22147	chr12	-	1928	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	35	581	-4	-581	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAGCTGGAAAATATG	NA	False	NA	NA	False	NA	NA	NA	31401417	31381856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
22149	chr6	-	4047	7	ISM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	9059	0	9058	0	intron_retention	FALSE	canonical	3	375	junction_6	71.4531703674201	22	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4723	False	NA	NA	False	NA	NA	NA	49231886	49220857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315
22150	chr12	+	2180	6	NNC	ENSMUSG00000020570.16	novel	2019	5	NA	NA	7	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	145.096657439102	1489	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCCCCGTTGTTATATT	8432	False	NA	NA	False	NA	NA	NA	33004189	33026911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_33004359_33015371_33015500_33017534_33017743_33019179_33019340_33024126_33024319_33025588
22151	chr9	+	2280	4	NNC	ENSMUSG00000057982.9	novel	1800	3	NA	NA	4	1082	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATAAAGTTCTAGTTTT	744	False	NA	NA	False	NA	NA	NA	22137013	22152473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137129_22146321_22146443_22149837_22150524_22151115
22152	chrX	+	3552	9	NNC	ENSMUSG00000067873.12	novel	2810	10	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	163.384850506404	11	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGTGGACTTGAGTTAA	NA	False	NA	NA	False	NA	NA	NA	56099255	56112539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56099559_56100018_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
22153	chr2	-	3850	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	20	3	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	226	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATTTATTTCTCATTAG	NA	False	NA	NA	False	NA	NA	NA	130471927	130431918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
22155	chr3	+	2463	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	123	1492	103	233	multi-exon	FALSE	canonical	0	0	junction_6	154.691388272057	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGACCTTAAATAAAATTAT	NA	False	NA	NA	False	NA	NA	NA	67337551	67382370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
22156	chr11	+	3383	26	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	-7	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	902.225917606006	1	114	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCCTTTTTCTTATGTG	NA	False	NA	NA	False	NA	NA	NA	23206070	23246223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206644_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228320_23228693_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236917_23237344_23237459_23239794_23239910_23241462_23241632_23243771_23243900_23243988_23244149_23244595_23244693_23245963
22157	chr18	+	2487	11	ISM	ENSMUSG00000037236.17	ENSMUST00000237744.2	2845	15	9387	5425	-87	4313	internal_fragment	FALSE	canonical	3	826	junction_1	84.2128256265042	4	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGCTGCAAAAAATGGT	1676	False	NA	NA	False	NA	NA	NA	35704892	35718092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567
22158	chr1	-	4040	8	Antisense	novelGene_ENSMUSG00000026634.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGACTCCGGGCATGCGCA	NA	False	NA	NA	False	NA	NA	NA	190678688	190660716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_190660955_190665062_190665388_190669638_190669898_190671283_190671353_190673069_190674442_190675023_190675085_190675973_190676136_190677134
22159	chr11	+	1766	12	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	8	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1101.40893990042	12	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCATAGACCATGCAAG	NA	False	NA	NA	False	NA	NA	NA	107370317	107388977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384360_107385523_107385631_107386513_107386592_107388349_107388450_107388507
22160	chr5	-	5175	16	NIC	ENSMUSG00000062604.12	novel	6491	15	NA	NA	-12	903	combination_of_known_junctions	FALSE	canonical	3	183	junction_8	31.7487357578569	271	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACCAAATCTAATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23880977	23709546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
22161	chr6	-	1534	5	NIC	ENSMUSG00000030357.11	novel	2678	9	NA	NA	29	182	intron_retention	FALSE	canonical	3	5250	junction_2	242.612860335144	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGCTGGAGCAGAGCAA	9298	False	NA	NA	False	NA	NA	NA	128415611	128410542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
22162	chr12	+	2544	4	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	21	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	302.527501045589	4	73	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516911	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552666_86566464
22163	chr5	+	3956	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	359	7	-29	-7	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	427	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTAACTCAAGGTATTCC	NA	False	NA	NA	False	NA	NA	NA	120751162	120766650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
22164	chr7	+	2440	17	Antisense	novelGene_ENSMUSG00000084453.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAGACACGAACCAGCTA	NA	False	NA	NA	False	NA	NA	NA	126146083	126165505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126146152_126147045_126147097_126151150_126151511_126155454_126155680_126155881_126156073_126156344_126156435_126156540_126156663_126156849_126156998_126157806_126157910_126158024_126158184_126161736_126161865_126162176_126162286_126162416_126162470_126162798_126162925_126163587_126163782_126163876_126163930_126165245
22165	chr1	+	1295	4	ISM	ENSMUSG00000025962.16	ENSMUST00000148758.8	2117	5	33	2034	31	-2034	5prime_fragment	FALSE	canonical	3	319	junction_1	46.1615520632581	3	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAATTAAAAGCAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	63769832	63774972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621
22166	chr1	+	1864	6	NNC	ENSMUSG00000025962.16	novel	2613	11	NA	NA	-1850	-139	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	166.724443318909	6	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCATCCTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	63775022	63789296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63775527_63776719_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844
22167	chr2	-	3179	20	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	951	420	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	47.6756702006996	5	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	71196926	71104613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71159421_71159504_71160290_71160375_71163948_71164065_71174233_71174377_71196870
22168	chr2	-	3369	6	NIC	ENSMUSG00000052406.15	novel	2281	8	NA	NA	-22	-3	intron_retention	FALSE	canonical	3	43	junction_4	64.1728914729576	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATGGAGTGTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	26854358	26843580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850614_26850753_26852394
22169	chr5_JH584297v1_random	-	571	1	Intergenic	novelGene_4783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTATGGTCTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	125379	124808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_JH584297v1_random_-_124800_125400
22170	chr13	-	1816	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2689.71329283125	1	41	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4780	False	NA	NA	False	NA	NA	NA	58550301	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543099_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
22171	chr4	+	2279	4	ISM	ENSMUSG00000028691.13	ENSMUST00000030454.6	636	5	2931	-322	2931	236	3prime_fragment	FALSE	canonical	3	22651	junction_1	765.110885209893	226	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGAACTTGGTGATTCAT	NA	False	NA	NA	False	NA	NA	NA	116547439	116556705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116549127_116550079_116550203_116550913_116551045_116556367
22172	chr15	-	1352	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1369	159	1242	-159	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	8	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCATTCCTTGAGCCCC	1400	False	NA	NA	False	NA	NA	NA	98831077	98829464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
22173	chr9	+	2823	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	-23	0	-23	0	multi-exon	FALSE	canonical	3	88	junction_1	13	360	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTCTGAAAGTTTA	-28	True	NA	NA	False	NA	NA	NA	4376538	4386870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_4376624_4383536_4384143_4384738
22175	chr15	-	1530	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	205	8	78	-8	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTTTGTTTCTGGA	236	False	NA	NA	False	NA	NA	NA	98832241	98829313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
22176	chr11	+	2386	11	Antisense	novelGene_ENSMUSG00000025130.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAGCCAAGGCGACGAGA	6811	False	NA	NA	False	NA	NA	NA	120451128	120463677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120452086_120452985_120453066_120453192_120453372_120453480_120453607_120454038_120454222_120454452_120454557_120454662_120454747_120458743_120458881_120458999_120459134_120462346_120462556_120463484
22177	chr5	+	3301	16	NNC	ENSMUSG00000079659.6	novel	1040	5	NA	NA	5640	726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	89	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGAGCGAGCGCAACCAG	7001	False	NA	-99	True	NA	NA	NA	9168887	9211712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_9170141_9171086_9171465_9171781_9171938_9174441_9174530_9177959_9178108_9179146_9179374_9180364_9180477_9181274_9181305_9182445_9182617_9186071_9186140_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200495_9201799_9201919_9211613
22178	chr11	-	2027	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1698.92258799511	2	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676119_106676218_106676262_106677273_106677371_106677734_106677901_106679098
22179	chr11	-	1844	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	-16	-1	-16	0	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	215	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120238933	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
22180	chr1	-	2374	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	41	27	41	1	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	1101	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGGGTGTAGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	53391870	53383802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
22182	chr3	+	5416	7	NNC	ENSMUSG00000027601.14	novel	2953	8	NA	NA	-5	-6	intron_retention	FALSE	canonical	0	0	junction_5	415.448118167466	1	169	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTACTGCTGAGTCTCT	NA	False	NA	NA	False	NA	NA	NA	19242423	19273714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19269868_19271343_19271588_19272332_19272486_19273201
22184	chr11	-	2345	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	-120	-6	-120	0	multi-exon	FALSE	canonical	3	37	junction_10	281.644616493907	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8172	False	NA	NA	False	NA	NA	NA	69573030	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
22185	chr2	-	2341	15	FSM	ENSMUSG00000026767.13	ENSMUST00000028105.13	2344	15	3	0	3	0	multi-exon	FALSE	canonical	3	102	junction_11	25.5990473355904	616	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	NA	False	NA	NA	NA	12424278	12352073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
22186	chr11	+	1716	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-273	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4245.84773160791	5	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAATATATCATGCCTCC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647832_75650163_75650255_75655445
22187	chr3	-	6540	24	NNC	ENSMUSG00000036834.17	novel	6010	23	NA	NA	8	-14	at_least_one_novel_splicesite	FALSE	non_canonical	2	5	junction_22	5.35930193236661	31	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATTTTTGAACACTTGA	NA	False	NA	NA	False	NA	NA	NA	63806855	63603672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_63606902_63609204_63609560_63611554_63611635_63611937_63612085_63615137_63615223_63616941_63617067_63618384_63618493_63618588_63618769_63623404_63623503_63626608_63626704_63628593_63628666_63630170_63630333_63639037_63639146_63648043_63648216_63651899_63652021_63660548_63660753_63662672_63662767_63674877_63675049_63681061_63681190_63688730_63688977_63691411_63691559_63778076_63778196_63793348_63793435_63806647
22188	chr6	-	1876	5	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.89711431702997	1	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCAAATCAGCCTATCT	7474	False	NA	NA	False	NA	NA	NA	122691590	122684572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688759_122689580_122689666_122690091_122690462_122690751
22189	chr5	+	2807	17	FSM	ENSMUSG00000038828.14	ENSMUST00000201203.4	6110	17	1586	1717	-33	0	multi-exon	TRUE	canonical	3	358	junction_2	22.5422346662881	282	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGCTTTCCTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	31026941	31034807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
22190	chr2	+	2761	4	FSM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	-71	0	22	0	multi-exon	FALSE	canonical	3	55	junction_3	80.1373820385967	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	156681948	156697490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_156682159_156686075_156686302_156695048_156695149_156695265
22191	chr17	-	2119	14	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	259.926753451358	14	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	NA	False	NA	NA	NA	36280644	36267710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36275167_36275233_36275968_36276016_36280537
22192	chr16	+	2377	2	FSM	ENSMUSG00000022529.12	ENSMUST00000162207.2	2452	2	81	-6	81	0	multi-exon	FALSE	canonical	3	253	junction_1	0	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATAAATCTTTATTGG	2003	False	NA	NA	False	NA	NA	NA	3565831	3568654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_3566130_3566575
22193	chr12	-	2712	18	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-11	-10	intron_retention	FALSE	canonical	3	128	junction_17	38.2608964057512	13	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTCTTCTACAATAGAC	NA	False	NA	NA	False	NA	NA	NA	84664155	84649316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
22195	chr10	-	3209	6	FSM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	-27	-2	-27	2	multi-exon	FALSE	canonical	3	160	junction_5	17.0528589978338	337	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGACTGTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	128532160	128513041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128532054
22199	chr4	+	2484	9	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	3	-2	intron_retention	FALSE	canonical	2	4	junction_8	798.416088264759	80	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTGGTCATGATGTCTG	NA	False	NA	NA	False	NA	NA	NA	118478049	118484971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016_118484204_118484818
22200	chr6	-	3577	12	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-23797	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	157.921363421145	2	103	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGCTTCTGTAGTATGT	NA	False	NA	NA	False	NA	NA	NA	49111831	49062156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49064375_49064701_49064816_49065359_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780
22201	chr11	-	2816	11	NIC	ENSMUSG00000035086.14	novel	2123	12	NA	NA	12	0	intron_retention	FALSE	canonical	3	365	junction_7	51.9161824482502	14	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	NA	False	NA	NA	NA	101193051	101179087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
22203	chr8	+	3642	11	ISM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	6935	0	6448	0	3prime_fragment	FALSE	canonical	3	206	junction_9	76.5637642752758	378	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	106370145	106409554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
22204	chr2	-	3383	21	NNC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-3	-12	intron_retention	FALSE	canonical	3	15	junction_4	71.492237340847	1	59	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTGAAGTCTAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	11782321	11747397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753875_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
22205	chr19	-	1836	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.93458700951	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902374	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883040_15883319_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
22206	chr9	+	2487	14	NNC	ENSMUSG00000032435.10	novel	2601	13	NA	NA	42	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	123.324078761477	29	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGGGTCAAATAACGTGT	2168	False	NA	NA	False	NA	NA	NA	114517899	114553371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114517968_114518040_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
22207	chr11	-	2394	13	NNC	ENSMUSG00000020917.18	novel	4426	29	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1405.04012151097	1	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	1727	False	NA	NA	False	NA	NA	NA	100385047	100367178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373120_100374530_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100384973
22208	chr8	+	1649	8	ISM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	10873	0	-403	0	3prime_fragment	FALSE	canonical	3	1485	junction_2	108.604694151941	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	75847124	75854316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
22209	chr9	-	3525	27	NIC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	-24	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	218.671323975034	8	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAATGTTGTTTTTTTGC	8269	False	NA	NA	False	NA	NA	NA	95393971	95343032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
22210	chr7	-	3882	1	Antisense	novelGene_ENSMUSG00000055320.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	249	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGGGGAGGGGGGGGCT	NA	False	NA	NA	False	NA	NA	NA	112505988	112502106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_112502100_112506000
22212	chr18	+	2229	7	ISM	ENSMUSG00000024271.9	ENSMUST00000025120.8	2497	19	18009	5969	-4214	1019	intron_retention	FALSE	canonical	3	783	junction_2	57.3510147154249	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAACAAGTACTTCTTCAC	8380	False	NA	NA	False	NA	NA	NA	24755028	24765898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415
22213	chr18	+	2202	3	NIC	ENSMUSG00000024271.9	novel	2497	19	NA	NA	6606	-4	intron_retention	FALSE	canonical	3	938	junction_1	30.5	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAACTTTGTCTGATTTT	NA	False	NA	NA	False	NA	NA	NA	24765848	24771863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_24767530_24767957_24768066_24771450
22214	chr11	-	2038	17	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	0	118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	438.766577322157	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGGCCCCTCTTGGGA	NA	False	NA	NA	False	NA	NA	NA	75239136	75192012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203807_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
22216	chr12	-	6179	4	NIC	ENSMUSG00000034460.10	novel	6402	3	NA	NA	1	-16	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	12.2836838484589	69	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATATTTATACATACTTT	NA	False	NA	NA	False	NA	NA	NA	73160198	73146398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_73151013_73155434_73156124_73159116_73159932_73160137
22217	SIRV7	-	2218	5	NNC	SIRV7A	novel	2247	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1492.17783373832	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	114916	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_4095_4180_4725_4831_114680
22218	chr16	+	3006	1	NIC	ENSMUSG00000060636.15	novel	491	5	NA	NA	137	4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTTTTTTTTCACATC	NA	False	NA	NA	False	NA	NA	NA	32877524	32880530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32877500_32880500
22219	chr8	+	962	4	FSM	ENSMUSG00000031628.10	ENSMUST00000209668.2	1173	4	38	173	3	-173	multi-exon	FALSE	canonical	3	221	junction_1	26.5455583227527	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATTGGTTTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	47070479	47087944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232
22220	chr9	-	4574	14	FSM	ENSMUSG00000025234.12	ENSMUST00000171975.8	6971	14	537	1860	6	-1860	multi-exon	FALSE	canonical	3	295	junction_6	43.7741649239926	297	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTTATTCCATTAGTT	NA	False	NA	NA	False	NA	NA	NA	59393360	59297400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_59300662_59302160_59302274_59303633_59303895_59310650_59310709_59313007_59313139_59315158_59315231_59315657_59315701_59319707_59319815_59322052_59322120_59333405_59333462_59333896_59333990_59344053_59344199_59361684_59361753_59393261
22221	chr9	+	3035	16	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	4167	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	275.822036022424	1	87	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTATGTGTTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	44295992	44303659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298427_44299023_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285_44302803_44302841
22223	chr5	-	2021	14	NIC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_12	150.475380832502	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	22755385	22691486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751503_22752921_22753015_22755189
22226	chr2	+	2441	11	NIC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	-5	124	intron_retention	FALSE	canonical	3	1110	junction_4	154.460383270274	58	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAGAGCACATGGTATAT	4159	False	NA	NA	False	NA	NA	NA	127429333	127445899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
22228	chr6	-	1356	5	ISM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	9947	3	9881	-3	3prime_fragment	FALSE	canonical	3	1572	junction_1	86.4118047491198	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	7766	False	NA	NA	False	NA	NA	NA	47780417	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364
22229	chr12	+	2080	7	NIC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	0	3	intron_retention	FALSE	canonical	3	1278	junction_1	248.061652282922	8	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGCTTTTGGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	80992307	80997274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80992447_80993349_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
22230	chr14	-	1614	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-120	-16	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	1074.88277703897	203	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGATCGCTTGCAACTTG	NA	False	NA	NA	False	NA	NA	NA	63746325	63729811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733554_63734393_63734465_63735046_63735090_63737569_63737770_63746158
22231	chr5	-	1672	4	NIC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	3	-30	intron_retention	FALSE	canonical	3	5649	junction_3	1280.51873169518	32	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTCTAAGTAAATACAATT	6767	False	NA	NA	False	NA	NA	NA	148989847	148985067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_148985724_148986536_148987251_148987397_148987562_148989709
22232	chr3	-	2236	2	ISM	ENSMUSG00000052544.10	ENSMUST00000199707.2	416	3	19055	-1899	19055	1899	3prime_fragment	FALSE	canonical	3	111	junction_1	0	212	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	152912365	152909103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_152911229_152912254
22233	chr18	+	3300	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	18	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	622.80730366623	1	128	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATATTTTTAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	67908062	67928534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925007_67926243
22234	chr2	+	1957	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1876	junction_8	241.9110580358	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTATTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	130116349	130121230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
22235	chr2	-	2421	13	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	38	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.458713059329	6	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTCCCCTTTGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	165740898	165669109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693917_165694069_165704105_165704267_165717624_165717696_165740835
22239	chr11	-	1269	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	52	0	-3	0	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	3424	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6813	False	NA	NA	False	NA	NA	NA	69553416	69547522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
22240	chr9	-	4190	6	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4350	-38	intron_retention	FALSE	canonical	3	52	junction_5	65.3740009483893	2	106	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGTTGCTTAGGAAACCA	NA	False	NA	NA	False	NA	NA	NA	27033496	27008717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
22241	chr15	+	3256	7	NIC	ENSMUSG00000022471.15	novel	3296	13	NA	NA	-75	4	intron_retention	FALSE	canonical	3	583	junction_2	41.7628888953924	1	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCACTTTTCAGTATGAAT	NA	False	NA	NA	False	NA	NA	NA	81907101	81924290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81907263_81909705_81909890_81911425_81911613_81913322_81915464_81919877_81919979_81921657_81921772_81923922
22242	chr2	+	2391	9	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	531.289880856016	1	91	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8592	False	NA	NA	False	NA	NA	NA	72306525	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312040_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315097_72315526_72315657_72316063
22244	chr14	+	4022	10	NNC	ENSMUSG00000115627.2	novel	880	4	NA	NA	-74109	-38790	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	103	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCAGCTGGAACCCGCCC	NA	False	NA	NA	False	NA	NA	NA	61201299	61275436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_61203914_61208276_61208679_61209425_61209532_61210949_61211080_61212040_61212202_61234051_61234140_61242523_61242705_61261619_61261728_61262191_61262285_61275297
22245	chr6	+	2277	14	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-30	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	294.741246463511	1	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCACTCCTAGTTGCTGT	5407	False	NA	NA	False	NA	NA	NA	125108841	125121704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114168_125114268_125114320_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
22246	chr11	-	4159	29	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	-12	-11	intron_retention	FALSE	canonical	0	0	junction_23	73.2320187583858	2	139	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTAAAAAATCAGTACTT	NA	False	NA	NA	False	NA	NA	NA	60618061	60604979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611321_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613221_60613406_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
22248	chr16	+	1930	10	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_7	285.656532081778	558	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATGTTATCTTTCATGT	7080	False	NA	NA	False	NA	NA	NA	38379069	38411666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38407560_38407742_38408544_38408666_38411273
22249	chr17	+	2444	5	NIC	ENSMUSG00000023902.19	novel	2609	7	NA	NA	-4	0	intron_retention	FALSE	canonical	3	18	junction_2	109.005733794145	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	875	False	NA	NA	False	NA	NA	NA	23819825	23829993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240
22250	chr17	-	2453	16	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	228.964761966164	3	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTTCTATGCTCAC	NA	False	NA	NA	False	NA	NA	NA	28841415	28808563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825398_28826078_28826167_28827617_28827739_28840950_28841012_28841373
22251	chr5	+	2632	9	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	414.862552539995	1	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478602	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486299_111494348_111494449_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
22252	chr8	+	3377	23	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	81349	5	81349	-5	3prime_fragment	FALSE	canonical	3	97	junction_3	29.2337756091073	3	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAGCGTTCTGTACCTGA	NA	False	NA	NA	False	NA	NA	NA	118306378	118361876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
22253	chr15	+	2674	13	NNC	ENSMUSG00000022385.12	novel	2641	12	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	178.750058275049	510	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7094	False	NA	NA	False	NA	NA	NA	85743902	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85757920_85757972_85758078_85759175_85759420_85759736_85759953_85760349
22254	chr15	+	2715	8	Antisense	novelGene_ENSMUSG00000036606.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCTGCAAATGAAGGCC	NA	False	NA	NA	False	NA	NA	NA	89047936	89052462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89048316_89048414_89048738_89049449_89049602_89049901_89050033_89050108_89050208_89050566_89050692_89050783_89050972_89051144
22258	chr13	+	3423	2	Genic_Genomic	ENSMUSG00000019132.12	novel	5849	5	NA	NA	8853	1673	multi-exon	TRUE	non_canonical	0	0	junction_1	0	230	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTATAACAATAAGATTTT	4468	False	NA	NA	False	NA	NA	NA	24994855	24998316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_24995361_24995398
22259	chr10	-	2725	20	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	26	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	567.526523230974	1	98	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTCTATGTGCAAGCCGAG	NA	False	NA	NA	False	NA	NA	NA	127147521	127132108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133524_127133603_127133778_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
22260	chr13	+	2970	12	Antisense	novelGene_ENSMUSG00000116016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	67	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGGGTGCGGAAGCCGCG	NA	False	NA	NA	False	NA	NA	NA	111562697	111626514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111563186_111570081_111570185_111572930_111573118_111574489_111574611_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589784_111589909_111590031_111603384_111603504_111623955_111624907_111626253
22261	chr1	-	2573	20	Antisense	novelGene_ENSMUSG00000025995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCATAGGCCGACTGGCC	NA	False	NA	NA	False	NA	NA	NA	45862798	45834633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_45834745_45838177_45838306_45840313_45840385_45841196_45841308_45843076_45843161_45844537_45844608_45845832_45845951_45846828_45846918_45851198_45851359_45852202_45852268_45852352_45852466_45853700_45853876_45855635_45855794_45856420_45856602_45857327_45857423_45857979_45858078_45858648_45858817_45859288_45859349_45861605_45861787_45862461
22262	chr10	+	3499	24	NNC	ENSMUSG00000019984.17	novel	4798	29	NA	NA	18	450	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_23	13.6349933435356	19	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGACTGGAGATTCAATG	NA	False	NA	NA	False	NA	NA	NA	24745901	24783113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781961_24782954
22263	chr17	+	2617	13	NNC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	-1607	-2	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_2	27.7862625930313	3	28	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCATGAACTCTATGTT	NA	False	NA	NA	False	NA	NA	NA	15267854	15284483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15267925_15268781_15269576_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
22264	chr15	-	3923	13	NNC	ENSMUSG00000037280.13	novel	2746	12	NA	NA	-30	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0485764101167	162	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTGGATTTGAGTTCCT	1644	False	NA	NA	False	NA	NA	NA	100618388	100589690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100600046_100600140_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618287
22265	chr10	-	3380	11	NNC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	-4	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	154.273944656899	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATTTGATCTAAGTCA	NA	False	NA	NA	False	NA	NA	NA	127047458	127032955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127046920_127046980_127047206
22266	chr18	-	4484	25	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	422.945571672316	1	255	15	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60982015	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961892_60962081_60962188_60964579_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976425_60978873_60978939_60981822
22267	chr2	+	2899	21	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	24	-3	intron_retention	FALSE	non_canonical	0	0	junction_12	89.5633853759448	1	65	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTTGTTGTATGCTGT	NA	False	NA	NA	False	NA	NA	NA	130266347	130285651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281838_130282150_130282663_130282819_130282932_130283090_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
22268	chr17	+	1542	10	NNC	ENSMUSG00000019432.16	novel	2848	10	NA	NA	444	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	735.656136124266	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAACCGTGTCTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	35462086	35472657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472299_35472482
22269	chr11	-	3814	2	ISM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	11437	9	1201	-9	intron_retention	FALSE	canonical	3	77	junction_1	0	9	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTTGTACACTCGGAAC	NA	False	NA	NA	False	NA	NA	NA	73078431	73074431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_73075878_73076063
22270	chr7	+	2536	1	Genic_Genomic	ENSMUSG00000030432.13	novel	NA	NA	NA	NA	-25	434	mono-exon	FALSE	NA	NA	NA	NA	NA	23	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGTCTTCAGACACACC	2784	False	NA	NA	False	NA	NA	NA	4795963	4798499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_4796000_4798500
22272	chr10	+	2707	12	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	604	junction_6	35.5778740787999	36	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCAGAACCAGAGTTTCA	9213	False	NA	NA	False	NA	NA	NA	127102252	127117814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127111792_127112252_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
22273	chr10	+	1974	6	NIC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	21	-26	intron_retention	FALSE	canonical	3	4641	junction_1	479.064338059096	80	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAAGACAAAGAGTATGG	NA	False	NA	NA	False	NA	NA	NA	126899423	126903140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
22276	chr11	-	2344	13	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	246	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCCAAGCTAATAAGACCC	1326	False	NA	NA	False	NA	NA	NA	50277355	50268912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50269252_50270293_50270449_50270645_50270790_50272283_50272423_50273361_50273541_50273624_50273697_50273752_50273888_50274005_50274142_50274506_50274566_50274656_50274748_50275470_50275563_50275966_50276016_50276601
22278	chr15	-	2375	2	ISM	ENSMUSG00000022464.15	ENSMUST00000231039.2	3923	15	21410	-4	21410	4	3prime_fragment	FALSE	canonical	3	1547	junction_1	0	66	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATCTTCTTTCGTGAGT	NA	False	NA	NA	False	NA	NA	NA	96896422	96892696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_96894973_96896323
22279	chr13	-	1353	10	ISM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	40	9156	-1	-4115	5prime_fragment	FALSE	canonical	3	1480	junction_2	194.107326809133	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTGCGCCTCAGTGCAT	NA	False	NA	NA	False	NA	NA	NA	74498359	74479528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
22280	chr18	-	1781	12	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	116	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGATGGCAAGCAATGATA	NA	False	NA	NA	False	NA	NA	NA	32999383	32983487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32983581_32985026_32985142_32985532_32985709_32985915_32986025_32987831_32987912_32992271_32992376_32994076_32994174_32994550_32994704_32995979_32996106_32996248_32996315_32997709_32997892_32998903
22281	chr2	+	2535	17	NNC	ENSMUSG00000027012.16	novel	2585	17	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	198.274499983609	88	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAATTTTCACTTTT	NA	False	NA	NA	False	NA	NA	NA	71042077	71093638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71068723_71068766_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
22282	chr2	+	2543	17	FSM	ENSMUSG00000027012.16	ENSMUST00000100028.10	2097	17	-16	-430	-4	-2	multi-exon	FALSE	canonical	1	5	junction_4	189.242197659507	60	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAACTTCTCAAATTTTCA	NA	False	NA	NA	False	NA	NA	NA	71042311	71093633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
22283	chr15	-	3466	11	NNC	ENSMUSG00000022614.9	novel	3262	13	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	97.464916764957	3	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	89239815	89235345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89236091_89236185_89236294_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237548_89237659_89237802_89238031_89238211_89238285_89238520_89238629
22285	chr11	+	5351	16	NIC	ENSMUSG00000059474.14	novel	5245	16	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	45.102648357817	95	105	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTATTTTATCAATTTTT	NA	False	NA	NA	False	NA	NA	NA	93776678	93837805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_93776889_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834487
22286	chr4	+	2335	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	258	-3	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_5	196.009266753032	2	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATGATCAGATTATACT	5306	False	NA	NA	False	NA	NA	NA	89055616	89099315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089438_89090552_89090622_89095039_89095163_89097704
22287	chr9	-	3209	5	NIC	ENSMUSG00000032018.15	novel	4787	6	NA	NA	-2	590	intron_retention	FALSE	canonical	3	174	junction_4	26.5176827796095	8	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTATTATCCACTTAAAT	NA	False	NA	NA	False	NA	NA	NA	42175554	42165438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_42167094_42167402_42167504_42169876_42171196_42173346_42173428_42175501
22288	chrX	-	5510	8	FSM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	45	1378	13	-1378	multi-exon	FALSE	canonical	3	21	junction_7	34.1317973719043	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTTCATCCCCCTAT	NA	False	NA	NA	False	NA	NA	NA	93166968	93119615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93166673
22289	chr12	+	2043	9	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2110.43709557404	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759516_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
22290	chr11	-	3282	18	NNC	ENSMUSG00000025153.10	novel	10050	43	NA	NA	-1691	2860	intron_retention	FALSE	non_canonical	0	0	junction_9	137.5488085753	1	56	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAAATTTGATCTTTCTA	5764	False	NA	NA	False	NA	NA	NA	120707972	120702460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704869_120705302_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707304_120707447_120707564_120707672_120707877_120707950
22291	chr2	-	4313	28	ISM	ENSMUSG00000015647.10	ENSMUST00000015791.6	11388	79	41406	23	-4810	-23	3prime_fragment	FALSE	canonical	3	156	junction_26	55.5458016128812	1	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATTAAAATGACTTGTT	NA	False	NA	NA	False	NA	NA	NA	179826246	179818188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112_179825268_179825410_179825528_179825810_179826008_179826193
22292	chr2	-	3439	13	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.276385399196283	3	51	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCACCCACCATGTTCCT	NA	False	NA	NA	False	NA	NA	NA	180997817	180991152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180991368_180991459_180991772_180991916_180991995_180992425_180992963_180993037_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180997345_180997441_180997604_180997714
22293	chr6	-	2666	7	NNC	ENSMUSG00000038028.10	novel	3651	6	NA	NA	-27	-970	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	395.729986508759	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAATGGTTAGGCTGCC	NA	False	NA	NA	False	NA	NA	NA	127086547	127063048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_127065145_127065193_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
22294	chr8	+	2744	11	NNC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	-11533	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	144.208737599356	1	50	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCATTCTGAAGACTCCG	NA	False	NA	NA	False	NA	NA	NA	106391109	106409548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066_106408951_106408999
22295	chr12	+	2854	8	NNC	ENSMUSG00000020605.10	novel	2959	7	NA	NA	4	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	50.816195393651	743	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCAGAATTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	8363435	8393813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831_8392094_8392183
22296	chr8	+	2997	11	NIC	ENSMUSG00000003033.16	novel	2084	12	NA	NA	14	-10	intron_retention	FALSE	canonical	3	513	junction_8	40.4040839519967	6	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACATCTGCTGCCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	72993903	73011219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
22297	chrX	-	2398	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3387	837	3358	-822	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAGTACTTTCTAAATG	NA	False	NA	NA	False	NA	NA	NA	23227934	23086346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
22298	chr14	-	3394	18	FSM	ENSMUSG00000041594.19	ENSMUST00000148661.2	2719	18	106	-781	106	-1	multi-exon	FALSE	canonical	3	7	junction_17	41.7946868363775	2	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAACTGTCTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	123220448	123156390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220350
22299	chr10	+	2554	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	50	9	-5	-9	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	238	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGAACTTGCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	61516138	61529067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
22300	chr5	-	916	5	NIC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	0	-3693	intron_retention	FALSE	canonical	3	607	junction_2	17.9774163883468	4	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAGGAGGAAGACTTTA	NA	False	NA	NA	False	NA	NA	NA	34093594	34058952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
22301	chr4	-	1958	6	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	23	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	727.67069475141	8	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTGAGCCTGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	137084987	137047015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048504_137056023_137056125_137056325_137056436_137059717_137059791_137063285_137063441_137084956
22302	chrX	-	3441	27	NNC	ENSMUSG00000006678.7	novel	3612	2	NA	NA	-10	-37636	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	91.9050835302282	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGATCAACAGCCAAAGTG	4267	False	NA	NA	False	NA	NA	NA	92675771	92561731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_92562161_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
22303	chr10	-	2409	12	Antisense	novelGene_ENSMUSG00000019970.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	91	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCCGGCCGCGCGACCG	NA	False	NA	NA	False	NA	NA	NA	21875790	21870581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_21870724_21870863_21870940_21871370_21871448_21871691_21871796_21871922_21872007_21872119_21872252_21872455_21872569_21872875_21873000_21873238_21873334_21873793_21873932_21874056_21874147_21874556
22304	chr5	+	2192	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	58	17	58	-17	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	2	79	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650773	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
22305	chr9	-	1186	5	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1736	4	-272	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1660.48372093797	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8836	False	NA	NA	False	NA	NA	NA	78387270	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133
22306	chr1	+	4344	35	FSM	ENSMUSG00000039318.13	ENSMUST00000194740.6	4418	35	0	74	0	-74	multi-exon	FALSE	canonical	2	15	junction_25	17.4221203306776	77	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCAATCCTGTCTAAATT	NA	False	NA	NA	False	NA	NA	NA	184936313	185016308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999212_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
22307	chrX	-	3281	9	NIC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3359	-4	combination_of_known_junctions	FALSE	canonical	3	201	junction_6	366.28779668452	1	123	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTCTGCTCTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	23227933	23085528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23160453_23160520_23181368_23181441_23227732
22308	chr3	-	2205	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	166	junction_16	126.775253278193	20	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95662069
22310	chr4	+	2407	3	ISM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	13267	7	9356	-5	3prime_fragment	FALSE	canonical	3	198	junction_1	7	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGAGTTGTTGAGGTCA	4407	False	NA	NA	False	NA	NA	NA	156207708	156211715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_156208127_156208432_156208580_156209873
22311	chr9	+	1064	9	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.514274957871	142	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGAGTGGCTTTTC	642	False	NA	NA	False	NA	NA	NA	45281756	45307453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306373_45306819
22312	chr5	-	1957	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	-144	3	-144	-3	multi-exon	FALSE	canonical	3	315	junction_2	24.5	1348	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTGTGCTTCATTTAG	NA	False	NA	NA	False	NA	NA	NA	116561067	116546552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_116547550_116553465_116553530_116560171
22315	chr15	-	2951	17	NNC	ENSMUSG00000023015.15	novel	2933	17	NA	NA	-2280	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	171.552060247028	9	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTGATGTTGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	99551817	99518381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99551645
22316	chr8	-	2858	10	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-8	-3	intron_retention	FALSE	canonical	1	2	junction_3	72.393642719322	1	54	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGAAGAAAGTTAGCGAT	NA	False	NA	NA	False	NA	NA	NA	106578648	106571311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571628_106571705_106571811_106571891_106573024_106573305_106573433_106573615_106573811_106575382_106575532_106575644_106576154_106576257_106576346_106576464_106576556_106578502
22317	chr11	-	2005	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	-34	-5	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	407.2720982138	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGTTTGAGTGCAGAT	NA	False	NA	NA	False	NA	NA	NA	119190878	119179194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119186069_119186298_119186362_119186892_119186960_119188630_119188704_119190653
22319	chr13	-	2318	12	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	128	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	803.193491709169	1	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGTTGCTTTTGGTCAA	6220	False	NA	NA	False	NA	NA	NA	74487747	74470380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471276_74471959_74472065_74475041_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482448_74485496_74485659_74487165_74487331_74487690
22320	chr13	-	3954	7	NIC	ENSMUSG00000100235.9	novel	3886	7	NA	NA	19	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	5.33593686452737	48	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	False	NA	NA	False	NA	NA	NA	67256639	67217462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_67219593_67222149_67222246_67222896_67223024_67245856_67247112_67250106_67250200_67250761_67250888_67256512
22322	chr19	+	2455	12	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	14	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	393.665146963615	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGTCCGTTTCTTTTCTTT	848	False	NA	NA	False	NA	NA	NA	6413965	6427229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415729_6421309_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
22323	chr18	+	1613	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-101	-157	-101	157	mono-exon	FALSE	NA	NA	NA	NA	NA	6	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	82356485	82358098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
22324	chr4	-	3053	18	NIC	ENSMUSG00000028678.14	novel	2842	20	NA	NA	-24	5	intron_retention	FALSE	canonical	3	415	junction_12	23.5147012838902	55	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTCTGTGTGATTATC	NA	False	NA	NA	False	NA	NA	NA	117039763	117016830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117017580_117019206_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
22325	chr7	+	3218	23	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	38.1524779044289	32	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGCCTGTGTGTCCTCT	540	False	NA	NA	False	NA	NA	NA	110628198	110655584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651572_110655301
22326	chr5	+	2850	16	FSM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	47	1	-20	-1	multi-exon	FALSE	non_canonical	0	0	junction_5	54.5084702897938	260	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGAAGAGTCCCACAGGG	43	False	NA	NA	False	NA	NA	NA	120649279	120672088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
22327	chr16	+	2213	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_4	181.921839138559	64	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	48104097	48114600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48110476_48111376_48111678_48113273_48113470_48114061
22328	chr2	-	2526	1	Antisense	novelGene_ENSMUSG00000027306.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCACTCAGGAGGTAGAG	NA	False	NA	NA	False	NA	NA	NA	119480887	119478361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119478400_119480900
22329	chr9	+	2497	1	FSM	ENSMUSG00000009927.10	ENSMUST00000213116.2	1116	1	36	-1417	1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGGGTGCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	44318992	44321489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44319000_44321500
22330	chr5	+	1541	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	51	1513	8	98	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	6150	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCACTCG	8083	False	NA	NA	False	NA	NA	NA	145051075	145064996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
22331	chr17	-	2376	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	3	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGTGGTTTCTATGCTC	NA	False	NA	NA	False	NA	NA	NA	28841428	28808565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808755_28808832_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
22332	chr4	+	2219	15	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-20	127	intron_retention	FALSE	canonical	3	774	junction_2	75.8698200329797	2	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTATGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	155954051	155973317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972983_155973076
22333	chr2	+	3417	20	NNC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.5915341489765	3	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGAAGTCTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	132658061	132686120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132658210_132658275_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
22334	chr17	+	2917	4	Intergenic	novelGene_33	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1.88561808316413	1	118	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCTCCGAGTATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	17225442	17261814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225539_17228557_17228679_17257537_17257682_17259258
22335	chr6	-	2764	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	39	1	21	0	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	1	88	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGTGTCTATTACTTG	NA	False	NA	NA	False	NA	NA	NA	72416502	72409782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
22336	chr19	-	1806	12	ISM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	5182	1	5182	-1	3prime_fragment	FALSE	canonical	3	2912	junction_9	220.154190894916	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	8945	False	NA	NA	False	NA	NA	NA	7012153	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014
22337	chrX	+	3633	2	FSM	ENSMUSG00000033460.15	ENSMUST00000137173.2	951	2	-1288	-1394	-1	1	multi-exon	FALSE	canonical	3	131	junction_1	0	4	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAAAGCACTGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	133618717	133622658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133620475_133620782
22339	chr17	+	3610	15	FSM	ENSMUSG00000024030.8	ENSMUST00000024829.8	5832	15	11	2211	11	1289	multi-exon	FALSE	canonical	3	27	junction_11	5.07947048501744	163	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTCATTTAATTTCAAG	NA	False	NA	NA	False	NA	NA	NA	31276671	31334751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31276831_31283358_31283603_31311282_31311401_31313619_31313753_31317226_31317278_31323010_31323157_31324490_31324615_31325033_31325149_31327279_31327429_31327588_31327691_31328456_31328626_31329930_31330032_31330194_31330354_31331902_31332022_31333030
22340	chr9	+	2796	21	NIC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	-4	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	60.4220779185887	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGTGGTCAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	83716766	83754441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83750095_83750273_83750628_83750714_83751235_83751334_83754037
22341	chr7	-	2102	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	50	0	50	0	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	1139	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGTGAATCTATTTA	NA	False	NA	NA	False	NA	NA	NA	132178077	132159206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
22343	chr14	+	4340	39	NNC	ENSMUSG00000021843.18	novel	4436	41	NA	NA	-31	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	281.186353216967	1	210	18	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAATCAGCAAATAAAGGG	NA	False	NA	NA	False	NA	NA	NA	47886819	47973981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47901212_47901773_47904752_47904891_47907587_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941980_47943864_47943956_47944698_47944741_47946258_47946350_47948298_47948359_47952066_47952180_47957652_47957743_47961426_47961508_47962106_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971728_47973556
22344	chr3	-	2778	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	30	2082	30	-2082	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	880	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACAAAAACCTGAGTTCC	NA	False	NA	NA	False	NA	NA	NA	53771221	53762878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
22345	chr16	-	2985	13	ISM	ENSMUSG00000022710.18	ENSMUST00000162445.9	3447	32	24186	-1172	111	-8	3prime_fragment	FALSE	canonical	2	677	junction_5	97.118877613412	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATAATCCGATGACTGC	NA	False	NA	NA	False	NA	NA	NA	8515334	8507471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690
22347	chr5	+	2563	4	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	0	intron_retention	FALSE	canonical	3	7748	junction_1	3770.41477235006	20	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121342596	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121342616_121343468_121343919_121344729_121346639_121346844
22349	chr12	-	2983	3	NNC	ENSMUSG00000093846.2	novel	2857	5	NA	NA	155	-10397	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	4.5	50	52	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAACTCCTTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	22206492	22176153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_22178816_22180145_22180207_22206232
22350	chr13	-	1486	1	NIC	ENSMUSG00000113591.2	novel	1033	5	NA	NA	17843	-9789	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAATATTTTATGTGTA	NA	False	NA	NA	False	NA	NA	NA	34279412	34277926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_34277900_34279400
22351	chr2	-	3982	3	FSM	ENSMUSG00000047030.16	ENSMUST00000057627.16	4012	3	30	0	-12	0	multi-exon	FALSE	canonical	3	52	junction_2	1	209	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCGAAGATTTTTTTC	4612	False	NA	NA	False	NA	NA	NA	167334777	167323052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_167326500_167327077_167327514_167334678
22352	chr11	+	2899	19	ISM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	195	944	54	-944	5prime_fragment	FALSE	canonical	3	393	junction_7	34.8996798598639	12	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCGTCTTGGGAGTGGCC	NA	False	NA	NA	False	NA	NA	NA	119158907	119175336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272
22353	chr10	-	3234	22	FSM	ENSMUSG00000020124.11	ENSMUST00000220377.2	11525	22	45	8246	3	-24	multi-exon	FALSE	canonical	3	236	junction_15	99.6636747895759	1	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTTGCTGCTGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	123032855	122949156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
22354	chr11	-	2180	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	21	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1169.63592091727	1	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATTTGAAGACTGAATTA	9702	False	NA	NA	False	NA	NA	NA	106679272	106672388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679183
22355	chr7	-	2697	15	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	10	-2	intron_retention	FALSE	canonical	3	112	junction_9	38.145799779482	509	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAGCACTGCCCAGTT	NA	False	NA	NA	False	NA	NA	NA	30364375	30353142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30353728_30356373_30356504_30356586_30356699_30357023_30357344_30357927_30358409_30358487_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
22356	chr6	+	2229	14	FSM	ENSMUSG00000030347.7	ENSMUST00000032497.7	2501	14	5	267	0	86	multi-exon	FALSE	canonical	3	74	junction_10	14.682034265643	281	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTCTTACTCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	126916933	126952663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_126916990_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
22357	chr2	+	4295	4	FSM	ENSMUSG00000007476.19	ENSMUST00000095078.3	4301	4	3	3	3	2	multi-exon	FALSE	canonical	3	48	junction_3	22.6028513442196	190	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTGGAGGTCTCCA	NA	False	NA	NA	False	NA	NA	NA	30127736	30153799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30127818_30130580_30130690_30145179_30147345_30151859
22358	chr6	-	1583	10	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-8	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2309.76819423749	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTAAAGGAAATTGTGTAA	NA	False	NA	NA	False	NA	NA	NA	51446882	51439751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441448_51443151_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
22359	chrX	-	2360	4	Antisense	novelGene_ENSMUSG00000045427.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCGAGACGATAGACGAC	NA	False	NA	NA	False	NA	NA	NA	133507802	133502036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_133502081_133503438_133503511_133503665_133503707_133505599
22360	chr2	+	3463	21	Antisense	novelGene_ENSMUSG00000017670.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	301	10	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCCCCGTCTGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	165131074	165168386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165132484_165134026_165134102_165136159_165136244_165136933_165137042_165137163_165137279_165137382_165137545_165138758_165138900_165139266_165139376_165139460_165139566_165140128_165140262_165140537_165140663_165143860_165143910_165146817_165146901_165150832_165150985_165152094_165152204_165153550_165153727_165156651_165156706_165157526_165157599_165157918_165157959_165158158_165158271_165168336
22361	chrX	-	3625	14	FSM	ENSMUSG00000031392.19	ENSMUST00000114354.10	3835	14	206	4	15	0	multi-exon	FALSE	canonical	3	198	junction_10	56.8590076026845	27	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATATGCCTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	73067318	73057523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971_73067140_73067215
22362	chr11	+	2823	3	ISM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	4	10	4	-10	intron_retention	FALSE	canonical	3	244	junction_1	30.5	12	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAACATTGGAATGATGTA	NA	False	NA	NA	False	NA	NA	NA	53215509	53224118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_53215569_53218095_53218255_53221513
22363	chr10	+	2735	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-2	2	intron_retention	FALSE	non_canonical	0	0	junction_1	679.362870432453	1	108	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1587	False	NA	NA	False	NA	NA	NA	79690464	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79694553_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696808_79698253_79698376_79698486_79698704_79698811_79698890_79698978_79699402_79699501
22364	chr12	+	1999	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	-2	-81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3003.40417148341	2	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAATAAACTCTTGAATT	NA	False	NA	NA	False	NA	NA	NA	24758237	24764064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758437_24758558_24758634_24758937_24759085_24759323_24759441_24760374_24760490_24761445_24761541_24761667_24761777_24762722_24762765_24762859_24762974_24763078
22365	chr16	-	1622	13	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	3	113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1822.85122168236	7	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292758	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282788_87283119_87283198_87284442_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
22366	chr13	-	1597	12	NNC	ENSMUSG00000021546.19	novel	2653	15	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3369.54094771782	1	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATCTATTTTTGGTGGTC	4783	False	NA	NA	False	NA	NA	NA	58550298	58539771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541056_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543087_58543387_58543494_58546969_58547027_58547706_58547805_58548146_58548232_58550206
22367	chr2	+	2755	16	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-39	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	413.504179745098	2	109	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAACGATGTCCTTATGT	NA	False	NA	NA	False	NA	NA	NA	84867538	84877447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871179_84871409_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
22368	chr8	-	2852	15	NNC	ENSMUSG00000069920.11	novel	2325	2	NA	NA	2098	27429	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGCAGCGCCCAGAGCAA	9717	False	NA	NA	False	NA	NA	NA	105979685	105951840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_105952115_105957757_105957841_105961111_105961196_105965052_105965098_105966301_105966381_105966607_105966703_105967656_105967766_105973046_105973185_105973467_105973553_105974726_105974811_105975374_105975418_105975955_105976093_105976226_105976285_105977347_105977442_105978241
22369	chr14	+	2156	11	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	491.412952617246	1	17	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCCTGTGTCTGCATAGG	8900	False	NA	NA	False	NA	NA	NA	55777731	55786392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55786034_55786186
22373	chr15	+	1807	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-19	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	672.659006398404	2	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959428	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959504_78959978_78960020_78961030_78961159_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
22374	chr19	-	1857	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1184.36965926856	1	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3789	False	NA	NA	False	NA	NA	NA	7017309	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998122_6998278_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002793_7003712_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
22375	chr19	-	3122	7	NIC	ENSMUSG00000025024.8	novel	1992	6	NA	NA	0	988	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	104.802459682755	1071	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGAGCAAGTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	53379005	53366832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53374803_53374988_53377733_53377854_53378846
22377	chrUn_JH584304v1	-	2635	4	Intergenic	novelGene_4647	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_3	387.732152680458	2	64	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACCATAGCTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	59702	52670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55249_55511_55702_59591
22378	chr18	+	2787	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26525	160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	369.765718246747	2	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATACATTCTTGTAGAAT	6560	False	NA	-11	True	NA	NA	NA	77126378	77241192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207823_77214588_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
22380	chr5	+	2176	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	65	26	65	-26	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTAGTTGTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	45650780	45670007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
22381	chr8	-	3224	13	NNC	ENSMUSG00000038225.16	novel	3943	14	NA	NA	12287	23534	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	244	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCGCGCCTAGCCGGTC	NA	False	NA	NA	False	NA	NA	NA	47033361	47005094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47005162_47007048_47007097_47009114_47009229_47012901_47013005_47014810_47014872_47015450_47015680_47021643_47021718_47023004_47023113_47025784_47025865_47026466_47026514_47026881_47026945_47029259_47029416_47031287
22382	chr10	-	2923	7	NIC	ENSMUSG00000069520.7	novel	2799	7	NA	NA	-9	3	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	71.1213751273132	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	115198415	115176643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115198291
22383	chr9	+	1150	6	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACGTCCAAGGCGACTG	NA	False	NA	NA	False	NA	NA	NA	78385734	78388950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386766_78387612_78387710_78387797_78387968_78388917
22384	chr13	+	393	1	Intergenic	novelGene_1512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTGCTTAAAAGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	97637084	97637477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_97637100_97637500
22385	chr7	-	2319	1	Antisense	novelGene_ENSMUSG00000109511.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGCAGAGGAAGTGACAT	5461	False	NA	NA	False	NA	NA	NA	44480228	44477909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_44477900_44480200
22386	chr2	+	2202	11	NIC	ENSMUSG00000027282.18	novel	2281	12	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	3	420	junction_1	864.88450674064	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCATGCTTAGCCTGCTG	207	False	NA	NA	False	NA	NA	NA	90677609	90696983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90677730_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
22387	chr19	-	2602	22	Antisense	novelGene_ENSMUSG00000071650.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGGTTTGCTCCTTGACC	NA	False	NA	NA	False	NA	NA	NA	8892788	8875480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8875523_8879626_8879732_8879883_8879993_8882296_8882423_8884574_8884759_8885214_8885277_8886034_8886110_8886282_8886372_8886453_8886548_8886793_8886976_8887827_8887981_8888068_8888306_8888396_8888523_8888637_8888719_8888957_8889103_8889226_8889323_8889837_8889938_8890072_8890317_8891662_8891756_8892277_8892401_8892519_8892631_8892763
22388	chr6	+	2367	17	NNC	ENSMUSG00000029777.11	novel	2380	17	NA	NA	2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	747.261037786495	1424	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTTATAATCCATCTGT	NA	False	NA	NA	False	NA	NA	NA	55014993	55056474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045153_55046324_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
22390	chr7	-	2220	11	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-10	-77	intron_retention	FALSE	canonical	3	2155	junction_10	169.965172903157	38	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAAGCTGTGTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	89629777	89603944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_89604272_89604738_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
22392	chr8	+	2268	16	ISM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	409	22	3	0	intron_retention	FALSE	canonical	3	179	junction_1	101.150624757778	744	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	NA	False	NA	NA	NA	85415903	85426415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969
22393	chr16	-	2776	12	NIC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	337.062541711169	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAACTGTATCATTGTAC	8110	False	NA	NA	False	NA	NA	NA	4867727	4831771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4865597_4865678_4866613_4866651_4867669
22394	chr1	+	2908	17	Antisense	novelGene_ENSMUSG00000026355.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTGCCACTTCGCGCGCG	3134	False	NA	NA	False	NA	NA	NA	128259326	128287401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_128259791_128261255_128261394_128262499_128262654_128263464_128263601_128265850_128266017_128267088_128267211_128269014_128269177_128271146_128271255_128272032_128272166_128273600_128273751_128276104_128276257_128276661_128276802_128277032_128277202_128279166_128279419_128281195_128281311_128283255_128283395_128287193
22397	chr4	-	2372	20	NNC	ENSMUSG00000028559.18	novel	2903	24	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	125.582961951094	4	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTTTAAAAATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	109059431	108918858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108944628_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
22399	chr5	+	3073	17	NIC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	-10	87	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	59.7316590574044	396	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGGTTTCCTTGCATCGG	7975	False	NA	NA	False	NA	NA	NA	3853173	3891446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
22400	chr5	+	2190	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	427.150095495287	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815822	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33815961_33816020_33816072_33818686_33818729_33818864_33818990_33821164_33821247_33821512_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826101_33826816_33826992_33828747_33828855_33829008_33829130_33829325
22401	chr15	-	1498	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1369	13	1242	-13	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	3	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAAAGAGTTTTGTTT	1400	False	NA	NA	False	NA	NA	NA	98831077	98829318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
22403	chr16	-	1933	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	153	1317	48	582	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGTTGGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	22084602	22064615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
22404	chr9	+	2537	10	ISM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	26	29880	-6	-29880	5prime_fragment	FALSE	canonical	3	295	junction_2	41.9046536795139	75	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTGAGTCTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	114230169	114273565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076
22405	chr13	+	4132	7	Antisense	novelGene_ENSMUSG00000021306.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCGCACTTCCTCCCGCC	1480	False	NA	NA	False	NA	NA	NA	13531027	13568180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_13534009_13535882_13536008_13538028_13538160_13539632_13539780_13542172_13542392_13548935_13548990_13567705
22406	chr13	-	2647	9	NNC	ENSMUSG00000035834.12	novel	3054	8	NA	NA	1	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	90.9996565927586	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGATTTGCAGTGAACATT	NA	False	NA	NA	False	NA	NA	NA	81859120	81821959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81823329_81823725_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
22407	chr11	-	2917	2	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	967	0	intron_retention	FALSE	canonical	2	8	junction_1	0	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	NA	False	NA	NA	NA	120533502	120530241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120532132_120532475
22409	chr13	-	1352	10	Antisense	novelGene_ENSMUSG00000021666.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTAAAATTCTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	97292541	97274486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_97274535_97278432_97278519_97279515_97279599_97282152_97282211_97282725_97282824_97285814_97285947_97286837_97286920_97289733_97289823_97291695_97291757_97291926
22410	chr5	-	2607	15	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	-14	-265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	233.56139122164	1	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCTCTTCCCAACTCTG	NA	False	NA	NA	False	NA	NA	NA	38718932	38684420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692682_38694479_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
22411	chr19	+	2286	9	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	882	-358	intron_retention	TRUE	canonical	0	0	junction_5	295.854878910252	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTTTAAAAATGAAC	2515	False	NA	NA	False	NA	NA	NA	8924645	8929309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8927114_8927605_8927754_8928275_8928395_8928499_8928649_8928853
22412	chr8	+	2060	17	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	113.375964714749	232	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	NA	False	NA	NA	NA	85415903	85426415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
22414	chr6	+	2974	12	NNC	ENSMUSG00000054226.14	novel	2103	6	NA	NA	-7044	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	93.3340220360265	430	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	NA	False	NA	NA	False	NA	NA	NA	85881802	85907264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85881845_85887686_85887790_85888858_85888963_85890377_85890463_85891453_85891511_85892130_85892350_85892467_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
22415	chr14	-	1576	8	NIC	ENSMUSG00000060373.16	novel	1691	9	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1337.90924313166	9	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAAGGAAAGACAATTTT	8749	False	NA	NA	False	NA	NA	NA	52341461	52311906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312873_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
22416	chr10	+	4394	26	NNC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	11	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	84.4176853508789	1	132	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCATTAGAAAACCGCTAG	NA	False	NA	NA	False	NA	NA	NA	128139214	128157209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149707_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154038_128154212_128154813_128154908_128156112_128156315_128156602
22417	chr5	+	2062	15	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-24	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	926.654826981086	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650821	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652566_45652603_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222_45669904_45669947
22419	chr11	+	1767	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	32	0	-11	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	95557814	95571599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
22420	chr17	+	1511	6	NNC	ENSMUSG00000046711.17	novel	917	5	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2265.42578779354	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775596	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411_27781570_27781692
22421	chr9	-	2817	18	ISM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	209	1762	-1	-913	5prime_fragment	FALSE	canonical	3	273	junction_15	364.626794081205	8	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAGAATTAAATAATGAGT	NA	False	NA	NA	False	NA	NA	NA	64080177	64046187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
22422	chr13	+	1758	3	ISM	ENSMUSG00000057649.7	ENSMUST00000222749.2	635	5	-43	507	-1	-507	intron_retention	FALSE	canonical	2	15	junction_1	60.5	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCGCCAGCTACAGAGGTA	NA	False	NA	NA	False	NA	NA	NA	74086227	74088399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_74086355_74086552_74086768_74086983
22423	chr8	+	3173	24	FSM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	-41	690	4	-690	multi-exon	FALSE	canonical	3	158	junction_7	31.1019422681999	299	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCAGTGCACTATCTTT	NA	False	NA	NA	False	NA	NA	NA	85809902	85824221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
22424	chr13	+	2827	13	NNC	ENSMUSG00000062822.9	novel	3406	14	NA	NA	57	-18	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	37.4584955502605	2	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGTTTTGAAATTTTGA	NA	False	NA	NA	False	NA	NA	NA	119599376	119622635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119599656_119602193_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
22426	chr13	+	3675	12	NIC	ENSMUSG00000039242.11	novel	3892	12	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	22	junction_7	55.6602741252905	135	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGCCTTTTCCTATTTT	NA	False	NA	NA	False	NA	NA	NA	14129227	14173657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165994_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
22427	chr3	+	3672	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	1	2	1	-2	multi-exon	FALSE	canonical	3	85	junction_8	25.1755554804656	213	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGCATTGAACACCATG	NA	False	NA	NA	False	NA	NA	NA	135191372	135277163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
22428	chr5	-	2344	17	NNC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	560.419816828197	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCTGAAGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	122959350	122925792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122956982_122957718_122957751_122959042
22429	chr3	+	2714	25	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	176.424042319445	1	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGTCGTGGTGTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	54600278	54636180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600300_54600523_54600630_54602543_54602629_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629974_54630062_54633390_54633497_54634989_54635118_54635764
22430	chr15	-	1219	9	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	39	-1	at_least_one_novel_splicesite	FALSE	canonical	1	117	junction_5	9990.92504163153	29	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	4380	False	NA	NA	False	NA	NA	NA	79966745	79961992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964042_79964566_79964754_79965096_79965233_79965815_79965985_79966590
22432	chr4	+	2485	10	NNC	ENSMUSG00000066037.15	novel	2647	10	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	188.379312643663	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTATTTCAAATTCAAT	NA	False	NA	NA	False	NA	NA	NA	136038354	136067989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_136038401_136043671_136043796_136044352_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
22434	chr2	+	2761	18	NNC	ENSMUSG00000027469.17	novel	3483	18	NA	NA	0	-639	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	306.935697649116	2	80	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTTGTGGTTTCAGTCA	2708	False	NA	NA	False	NA	NA	NA	152689897	152735935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715119_152717500_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726934_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734053_152734221_152735503
22436	chr9	-	1587	7	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1696.49855093759	42	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGGGAACTCTGAACAAAA	NA	False	NA	NA	False	NA	NA	NA	110775162	110768690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769019_110769279_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
22437	chr18	-	2400	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	85	13	-33	-13	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	252	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGGACATGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	24254925	24237826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
22438	chr3	-	2971	5	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	688	junction_2	141.006205537203	2	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	7076	False	NA	NA	False	NA	NA	NA	153617670	153612927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153615799_153615897_153616004_153616327_153616526_153617561
22439	chr2	+	3856	5	NNC	ENSMUSG00000026917.16	novel	2890	14	NA	NA	1513	5	intron_retention	FALSE	non_canonical	0	0	junction_1	656.832931573928	4	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATATAAGTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	27419296	27426552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_27419604_27420468_27421727_27423004_27423424_27423779_27423868_27424768
22440	chr1	+	2779	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	267	830	33	-830	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	1	114	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAATAAAGTCCATC	924	False	NA	NA	False	NA	NA	NA	58432323	58445682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
22441	chr1	+	3343	2	Antisense	novelGene_ENSMUSG00000043629.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGATCTCCTGTCACCTG	NA	False	NA	NA	False	NA	NA	NA	52961615	52992420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_52964896_52992357
22442	chr16	-	2099	19	ISM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	133	5	133	1	intron_retention	FALSE	canonical	3	368	junction_7	53.1151788307469	2020	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTGGGTCTGTGATC	NA	False	NA	NA	False	NA	NA	NA	18630589	18599201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
22443	chr13	-	2517	11	NNC	ENSMUSG00000021377.16	novel	2556	11	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	478.759657866032	297	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	NA	False	NA	NA	NA	47259689	47238257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259152_47259548
22444	chr14	-	2839	15	FSM	ENSMUSG00000022218.17	ENSMUST00000178034.9	2730	15	-108	-1	-108	1	multi-exon	FALSE	canonical	3	107	junction_14	38.2803834241775	391	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTTAGTAGTCCTG	288	False	NA	NA	False	NA	NA	NA	55951059	55937489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950843
22445	chr3	-	2534	3	NIC	ENSMUSG00000027752.16	novel	2316	8	NA	NA	508	-11	intron_retention	FALSE	canonical	3	2141	junction_2	45.5	4	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTTGAAAGATATTTCT	NA	False	NA	NA	False	NA	NA	NA	54640136	54636113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54637307_54638495
22446	chr2	+	3229	14	NNC	ENSMUSG00000027242.15	novel	2789	13	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.000197237362	1	90	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATGTCTTTGAGTAA	NA	False	NA	NA	False	NA	NA	NA	121337272	121375337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121373817_121374759
22447	chrX	-	1742	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-25	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	3	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642050	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634297_135634372_135635251_135636294_135636372_135640553_135640644_135641958
22450	chr4	+	3352	8	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGTGCACCGCGCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	135065196	135080462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135065392_135067788_135067934_135068157_135068349_135069682_135069885_135071174_135071291_135071809_135074172_135074429_135074515_135080406
22454	chr2	+	2033	10	NIC	ENSMUSG00000027306.16	novel	2960	11	NA	NA	-6	-385	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	403.917605581591	132	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGGTTCATTGTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	119449203	119480256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119477570_119477680_119479373
22455	chr5	+	3678	22	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-1787	16	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	60.9700495224951	167	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATTAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	121885471	121952977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121951447_121951617_121952400
22456	chr12	+	1549	1	FSM	ENSMUSG00000091269.3	ENSMUST00000169666.3	1346	1	-106	-97	-106	97	mono-exon	FALSE	NA	NA	NA	NA	NA	24	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4832063	4833612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_4832100_4833600
22457	chr11	-	2697	17	NIC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	80	203	intron_retention	FALSE	canonical	3	283	junction_13	59.3399896781252	85	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGAATAGTTTTTCTT	1210	False	NA	NA	False	NA	NA	NA	107080098	107057982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
22461	chr6	+	3035	7	NIC	ENSMUSG00000000439.10	novel	6230	8	NA	NA	2	-3943	intron_retention	FALSE	canonical	3	438	junction_2	35.9370591760403	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAACCTGTATTCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	115578923	115595642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_115578975_115586541_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
22462	chr11	-	2293	16	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	-3	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	451.954687994272	1	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75239139	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191726_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
22463	chr6	+	3295	10	NIC	ENSMUSG00000030204.11	novel	1764	12	NA	NA	-3	-6	intron_retention	TRUE	canonical	3	485	junction_5	32.5841739969226	7	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTACCTGTGTGTGTCTG	6571	False	NA	NA	False	NA	NA	NA	134988571	135000729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134996075_134997578_134998542_135000241
22464	chr4	-	4400	6	NIC	ENSMUSG00000028622.12	novel	1498	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	549	junction_2	37.4411538283745	8	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGGTGTGAGATTGTCT	NA	False	NA	NA	False	NA	NA	NA	106924071	106913081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_106913302_106914568_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
22465	chr17	+	1901	5	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	15	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	858.014677904755	2	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGCTTAAGTTTCCTTA	NA	False	NA	NA	False	NA	NA	NA	29251677	29261718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257626_29260180_29260268_29260357
22466	chr4	-	4191	25	Intergenic	novelGene_1926	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	39	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGGAAGGAGGCGGAGGGA	NA	False	NA	NA	False	NA	NA	NA	109245010	109137553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_109137640_109154381_109154423_109161944_109162036_109162871_109162922_109166321_109166418_109169500_109169565_109170072_109170201_109173041_109173102_109178324_109178414_109179265_109179412_109181263_109181420_109186886_109186973_109200478_109200549_109218354_109218521_109218865_109219065_109220375_109220577_109223320_109223436_109223612_109223733_109227737_109227875_109230418_109230486_109235455_109235535_109237059_109237224_109239979_109240164_109242515_109243482_109244380
22467	chr8	-	2556	6	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	-1	198	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	63.0567997919336	237	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTTAGTGCCTCCCAT	NA	False	NA	NA	False	NA	NA	NA	70078200	70063309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072326_70076987_70077083_70078085
22469	chr3	+	1819	12	NNC	ENSMUSG00000001416.14	novel	1804	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1000.57941891372	2	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCGTTGTCATGTGTTT	3844	False	NA	NA	False	NA	NA	NA	88204462	88229072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227768_88228013_88228320_88228453_88228750
22470	chr9	+	1483	11	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	5844.36803769236	104	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGCTTTGTTCCACAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504_64085539_64085592
22471	chr4	+	1411	1	Antisense	novelGene_ENSMUSG00000042367.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACGAACACTACTGACAG	4266	False	NA	NA	False	NA	NA	NA	127219027	127220438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127219000_127220400
22474	chr11	-	2155	12	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	-7	29	intron_retention	FALSE	canonical	3	982	junction_6	83.2688565992043	136	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGAGCCTGCTTGAAGT	NA	False	NA	NA	False	NA	NA	NA	96807225	96798612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
22475	chr8	-	2380	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	16	2	16	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	671	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATCTGTCTCTGAAACTG	NA	False	NA	NA	False	NA	NA	NA	11685738	11661584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
22476	chr7	-	2587	15	FSM	ENSMUSG00000025474.10	ENSMUST00000211186.2	2610	15	16	7	16	-7	multi-exon	FALSE	canonical	3	194	junction_14	66.201801874485	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTATCTCGAGCAGTT	NA	False	NA	NA	False	NA	NA	NA	139616287	139578447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
22477	chr9	+	2491	10	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	13	1566	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	115.904174979928	49	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTAATGTGTTTTGTT	9227	False	NA	NA	False	NA	NA	NA	63509954	63549176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63510054_63524063_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
22478	chr4	+	2727	25	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	221.079108515984	1	62	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATTCCTACCAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	148642913	148666838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646873_148647173_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657643_148657734_148657840_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666283_148666740
22479	chr2	+	2269	17	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-138	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	589.412512061799	2	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157121207	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137313_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
22481	chr8	-	3297	10	NNC	ENSMUSG00000040010.11	novel	3517	10	NA	NA	-1714	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_9	747.978130663335	889	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGACTGTGTTCTGTG	4985	False	NA	NA	False	NA	NA	NA	122624955	122607888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613596_122613721_122614235_122614281_122615060_122615167_122623166_122623305_122624546
22483	chr8	-	2761	18	NIC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	10	-13	intron_retention	FALSE	canonical	3	374	junction_11	38.5226307458976	3	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCTCTTTGTACATCCC	1035	False	NA	NA	False	NA	NA	NA	3671292	3660102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3660220_3660310_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
22484	chr3	+	2264	20	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	385.157599861799	30	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	NA	False	NA	NA	NA	151916116	151938409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938178
22485	chr8	-	1846	6	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	54	-8	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	244.09047502924	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCAGCCACTGTCTGCT	NA	False	NA	NA	False	NA	NA	NA	96598966	96590769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591876_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803
22487	chr7	-	1978	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	141	8	-40	-2	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	3	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTCTATTGGTGTGCTC	8825	False	NA	NA	False	NA	NA	NA	141941634	141929655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
22489	chr3	-	2573	14	NNC	ENSMUSG00000055436.19	novel	3106	13	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	187.299778698726	132	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCTTCTGTAGAGCTGG	NA	False	NA	NA	False	NA	NA	NA	157742237	157716554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737207_157737255_157737286_157742152
22491	chr11	-	2757	2	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	2749	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	77	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACGGAGTTGCTTCATT	NA	False	NA	NA	False	NA	NA	NA	11756176	11750374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11753051_11756095
22492	chr2	-	2165	17	NNC	ENSMUSG00000074627.12	novel	3460	25	NA	NA	-46266	-14965	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTCTCCCCCGCGCCGGG	NA	False	NA	NA	False	NA	NA	NA	157167735	157121005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157121255_157125502_157125696_157131445_157131542_157132454_157132633_157136072_157136147_157137171_157137307_157139299_157139480_157141459_157141578_157144323_157144430_157152118_157152212_157154395_157154472_157156733_157156892_157158041_157158126_157159862_157159960_157162036_157162114_157163654_157163799_157167628
22493	chr11	-	1787	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	989.635779065516	5	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5271	False	NA	NA	False	NA	NA	NA	88846221	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815488_88819986_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835307_88843272_88843381_88846119
22494	chr8	+	2339	8	ISM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	54	-149	-28	149	intron_retention	FALSE	canonical	3	145	junction_5	13.6037209795628	678	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGTGGCGTGTGTATACC	NA	False	NA	NA	False	NA	NA	NA	95565002	95581672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232
22495	chr12	-	3507	14	ISM	ENSMUSG00000041846.16	ENSMUST00000163095.9	4083	15	15007	-395	14227	-8	3prime_fragment	FALSE	canonical	3	147	junction_8	131.381327647569	322	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAAATTGTATTAATTG	5182	False	NA	NA	False	NA	NA	NA	101034949	101005778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017696_101017789_101017922_101019687_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895
22496	chr15	-	1846	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-312	-83	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	1813.41920415551	5	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	31602262	31591028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601982
22497	chr15	-	3117	18	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-15	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.5502586924449	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTCAGCCCCGAGCTC	6979	False	NA	NA	False	NA	NA	NA	98560790	98543015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543265_98543348_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550358_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
22498	chr7	-	4191	5	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-115	0	intron_retention	FALSE	canonical	3	135	junction_1	6.94172168845741	14	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	140676767	140671087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140673244_140673639_140673839_140674694
22499	chr14	+	1810	9	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	2441.42554412376	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359964	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379642
22500	chr6	+	1427	9	ISM	ENSMUSG00000030007.9	ENSMUST00000204489.3	1561	11	9007	-68	321	68	3prime_fragment	FALSE	canonical	3	5813	junction_3	251.985831694959	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGAGGTTATTTAAATA	6012	False	NA	NA	False	NA	NA	NA	85438040	85445332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
22501	chr9	+	2905	16	NNC	ENSMUSG00000032264.10	novel	2863	16	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_11	76.2432947871483	401	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAGAGTGAGTGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	48966900	48990068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984468_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
22502	chr7	+	3690	7	ISM	ENSMUSG00000066406.17	ENSMUST00000207750.2	12597	38	45	143471	22	-2156	5prime_fragment	FALSE	canonical	3	11	junction_4	3.80423740350444	6	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGAGACAGGGCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	75105326	75260886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_75105497_75184555_75184600_75219631_75219780_75229249_75229547_75235904_75236089_75252533_75252727_75258232
22503	chr4	+	1249	8	NNC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	394	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	254.089410584992	1	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCTAGTGTGTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	117410200	117531475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_117410241_117421817_117422096_117439796_117439865_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
22504	chr5	-	2576	5	NIC	ENSMUSG00000079555.3	novel	2073	5	NA	NA	-2	-39	intron_retention	FALSE	canonical	3	26	junction_4	198.855475157211	6	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACTGAAGAGTTCTAA	9403	False	NA	NA	False	NA	NA	NA	34326794	34311262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326114
22505	chr4	+	3825	12	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	1	-5	intron_retention	FALSE	canonical	3	99	junction_1	28.1950115744958	55	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCCTGTGGCAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	115696420	115736442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115732012_115732577_115732743_115733777_115733822_115735146
22506	chr10	-	1892	2	ISM	ENSMUSG00000061983.8	ENSMUST00000220171.2	1795	3	2	12	2	2	intron_retention	FALSE	canonical	3	3724	junction_1	0	63	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663098	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_23662779_23662891
22507	chr10	-	4107	21	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-13949	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116.936478482978	265	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTTTGCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	61192055	61155438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61156821_61156868_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61191939
22508	chr1	-	2426	9	NIC	ENSMUSG00000025950.17	novel	2302	9	NA	NA	-903	-4	combination_of_known_junctions	FALSE	canonical	3	29	junction_8	302.294739244665	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGTGTTTATTATGTG	NA	False	NA	NA	False	NA	NA	NA	65219243	65197780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218921
22510	chr2	+	3030	21	Antisense	novelGene_ENSMUSG00000027014.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.217944947177034	1	85	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCGGAAGAGCGTCAGTT	360	False	NA	NA	False	NA	NA	NA	77726120	77776517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_77726919_77734131_77734368_77734456_77734570_77735700_77735827_77737423_77737584_77738416_77738492_77741855_77741919_77745846_77745910_77747390_77747509_77751164_77751225_77751310_77751518_77751753_77751769_77754478_77754538_77754830_77755000_77757551_77757679_77759594_77759847_77761780_77761886_77763038_77763108_77766936_77767064_77770642_77770709_77776495
22511	chr19	-	2668	4	NNC	ENSMUSG00000006456.11	novel	3165	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	180.743526086613	15	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7800	False	NA	NA	False	NA	NA	NA	4861627	4850949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4851834_4852578_4852727_4852835_4854044_4861199
22512	chr11	-	3883	32	FSM	ENSMUSG00000023764.19	ENSMUST00000066391.14	3898	32	9	6	6	0	multi-exon	TRUE	canonical	2	8	junction_15	27.928964448237	163	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCTCCTACTTTTCATA	7988	False	NA	NA	False	NA	NA	NA	3143454	3081886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3082132_3082215_3082328_3082886_3082966_3083071_3083208_3084317_3084502_3084625_3084731_3085282_3085543_3085653_3085831_3085942_3086018_3086624_3086700_3086945_3087107_3090136_3090234_3092307_3092411_3093259_3093337_3094216_3094293_3094791_3094971_3095240_3095323_3096161_3096293_3103431_3103499_3105398_3105497_3106771_3106865_3107865_3107937_3109984_3110147_3114556_3114714_3115575_3115679_3120586_3120705_3127426_3127522_3129396_3129508_3136064_3136137_3137239_3137411_3138940_3139057_3143359
22513	chr5	-	357	1	Intergenic	novelGene_852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTATCTTAAAAATTCTAA	NA	False	NA	NA	False	NA	NA	NA	124731928	124731571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_124731600_124731900
22515	chr19	+	4158	9	FSM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	-7	-2348	-7	0	multi-exon	FALSE	canonical	3	57	junction_3	14.3352711868315	99	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGGTTTCCTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	17114122	17201296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147
22516	chr14	+	3726	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	-7	4	-7	-4	multi-exon	FALSE	canonical	3	463	junction_11	40.4855688541514	1	123	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCCTGCTGGCCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	32043968	32070104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
22517	chr19	+	2558	14	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	375.517173946804	1	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCCGGGTCCGTTTCTTT	834	False	NA	NA	False	NA	NA	NA	6413951	6427224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424125_6424213_6424314_6424578_6424639_6424748_6424929_6426325
22518	chr5	+	6033	23	FSM	ENSMUSG00000046808.18	ENSMUST00000126664.8	6052	23	1	18	1	-4	multi-exon	TRUE	canonical	3	78	junction_3	13.360930461982	81	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATGTTCACTGGAAACT	NA	False	NA	NA	False	NA	NA	NA	72360672	72456100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_72360907_72384974_72385302_72387619_72387815_72396440_72396646_72399378_72399465_72403046_72403154_72403434_72403567_72404159_72404288_72404395_72404649_72412253_72412490_72418266_72418456_72421345_72421956_72423313_72423418_72424749_72424877_72426614_72426800_72434421_72434729_72436727_72436805_72437386_72437513_72439447_72439649_72445485_72445567_72446660_72446766_72452984_72453173_72454270
22519	chr3	-	1970	17	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	3	80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	427.195098688819	1	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAGATCCTTCACCATC	3553	False	NA	NA	False	NA	NA	NA	89959776	89909625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89909664_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917835_89922405_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928615_89951011_89951118_89952160_89952239_89955076_89955207_89959696
22520	chr10	-	659	2	ISM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	15749	0	13705	0	3prime_fragment	FALSE	canonical	3	1317	junction_1	0	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	85777938	85774500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_85774984_85777762
22521	chr17	+	3607	5	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-12	-2208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1585.69377560738	3	186	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGTTTTGAGGAATATT	NA	False	NA	NA	False	NA	NA	NA	13226733	13236813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227278_13229423_13229517_13232315_13232500_13233912
22522	chr7	-	3292	8	NIC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	8	junction_6	93.4351242787186	90	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTTTGGGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	55612198	55581040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55594706_55594834_55611199_55611321_55611947
22523	chr17	-	2503	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	271	1828	multi-exon	FALSE	canonical	3	28	junction_5	76.1799695136592	77	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTTTAAGTGGCTCATG	NA	False	NA	NA	False	NA	NA	NA	37299666	37278258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37298307_37298416_37298546_37298823_37299396
22524	chr4	+	2942	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	-72	0	-22	0	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	223	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	NA	False	NA	NA	NA	11558899	11615805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
22525	chr14	+	2125	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	123	1152	0	-7	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	12	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAAGCCACAGGACTCC	9014	False	NA	NA	False	NA	NA	NA	55777845	55786322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
22527	chr10	-	1823	10	NIC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	4	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	685.733346295936	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATACATTTTAATG	NA	False	NA	NA	False	NA	NA	NA	93725619	93696791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715934_93716001_93722855_93722964_93725399
22528	chr11	-	1334	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	79	387	-29	-387	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCACTTGGACGCGCT	1926	False	NA	NA	False	NA	NA	NA	59119017	59102626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
22530	chr12	-	4331	12	FSM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	-6	-289	-6	-2	multi-exon	FALSE	canonical	3	46	junction_11	24.5928834697229	108	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACACAGCTGTGTTGGCT	NA	False	NA	NA	False	NA	NA	NA	83644002	83593333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83643770
22531	chr5	+	1089	8	ISM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	4870	0	4628	0	3prime_fragment	FALSE	canonical	3	4657	junction_7	219.143136524314	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	5323	False	NA	NA	False	NA	NA	NA	135812203	135819245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
22532	chr18	+	2197	18	NNC	ENSMUSG00000024271.9	novel	3466	22	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	212.272169745454	16	10	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTTGTCTGATTTTGCC	NA	False	NA	NA	False	NA	NA	NA	24737030	24771866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752544_24759467_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
22533	chr8	+	2857	5	NNC	ENSMUSG00000066880.16	novel	2920	4	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.6352830254749	4	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTCTATTGCTGTGAAG	NA	False	NA	NA	False	NA	NA	NA	72676695	72688477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72676826_72682045_72682173_72682981_72683043_72685862_72687712_72687787
22534	chr13	+	3244	11	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	81	4	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	277.023031533481	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCTTACTTGTCCGTG	NA	False	NA	NA	False	NA	NA	NA	54225968	54262365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54226490_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
22535	chr13	-	1905	16	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	0	-150	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	191.506263315039	17	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGTTTGATGACTTACA	NA	False	NA	NA	False	NA	NA	NA	9046086	9022665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9022909_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
22536	chr10	+	2472	6	NIC	ENSMUSG00000020088.11	novel	2613	7	NA	NA	13	-4	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	520.643678536482	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACTTGCCTCTCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	61516121	61529072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61525552_61525685_61527063
22538	chr11	+	1141	3	Genic_Genomic	ENSMUSG00000081766.4	novel	346	1	NA	NA	-1812	412	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	NA	False	NA	NA	False	NA	NA	NA	88861670	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_88861851_88862193_88862314_88863399
22539	chr3	+	2853	7	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	-17	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	44.1877308260512	153	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAACCCTGCTTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	58484101	58500550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115_58498452_58498706
22540	chr15	+	2934	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-6	460	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	793	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAATGTACCCCCCAAATT	7496	False	NA	NA	False	NA	NA	NA	79775853	79793097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
22542	chr5	+	5323	20	FSM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	15	7	2	-7	multi-exon	FALSE	canonical	3	142	junction_14	17.8821937464506	121	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCCAGTGTCTAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	124767131	124801512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789272_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
22544	chr14	+	2853	3	NNC	ENSMUSG00000021737.5	novel	810	3	NA	NA	-75	-66	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	19	6	43	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGGATAATGACCTCATT	NA	False	NA	NA	False	NA	NA	NA	8349051	8352892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349769_8349846_8350455_8351364
22545	chr14	+	3844	5	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	15	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	106.088111963594	1	167	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATTTTCGTGATTTCAT	9645	False	NA	NA	False	NA	NA	NA	47535740	47560535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47547844_47548571_47556868_47557354_47557389_47557511_47558145
22546	chr13	-	2539	3	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-6753	-2362	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	93	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAAGGCGGGGTTCTCGGCG	NA	False	NA	NA	False	NA	NA	NA	58557910	58550068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58550331_58554814_58554903_58555721
22547	chr14	-	3241	12	NIC	ENSMUSG00000021814.18	novel	2727	13	NA	NA	66	359	intron_retention	FALSE	canonical	3	93	junction_11	241.581292034704	11	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCTGTTTAATGTTAAAA	8269	False	NA	NA	False	NA	NA	NA	20529910	20506237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20506670_20508637_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
22548	chr1	+	2096	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	56	688	0	273	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	734	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGGCACTAAGACAGAAT	NA	False	NA	NA	False	NA	NA	NA	55170445	55193370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
22549	chr19	+	1462	3	ISM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	3728	3	3575	-3	3prime_fragment	FALSE	canonical	3	5418	junction_1	175	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTACTGTTTGTCTTG	7788	False	NA	NA	False	NA	NA	NA	41904089	41907096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_41904319_41905081_41905263_41906044
22551	chr3	+	2873	8	Antisense	novelGene_ENSMUSG00000078173.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	124	11	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTCATTCGCTCTTTCCT	6383	False	NA	NA	False	NA	NA	NA	89309275	89319144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_89310605_89310698_89310780_89312890_89313074_89313157_89313230_89314715_89314863_89315727_89316473_89318463_89318686_89319050
22552	chr17	+	3686	26	NNC	ENSMUSG00000035842.11	novel	3520	26	NA	NA	-1	48	intron_retention	TRUE	canonical	1	2	junction_10	49.6068704918986	12	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCATTGGGCAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	66430549	66458432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445085_66445235_66445907_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
22553	chr9	+	4015	6	NIC	ENSMUSG00000004096.10	novel	1111	7	NA	NA	23	47	intron_retention	FALSE	canonical	3	777	junction_1	60.6630035524124	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTTTTGTGTGCTGTGGG	NA	False	NA	NA	False	NA	NA	NA	14411965	14421920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14419266_14421495
22555	chr13	+	3002	16	NIC	ENSMUSG00000035493.11	novel	2714	17	NA	NA	0	-1	intron_retention	FALSE	canonical	3	51	junction_1	6.38609600790829	193	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGTGTGCTAGCTGCGT	9425	False	NA	NA	False	NA	NA	NA	56757398	56787170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
22556	chr5	+	3014	6	NIC	ENSMUSG00000029464.11	novel	1592	8	NA	NA	16	-62	intron_retention	FALSE	canonical	3	429	junction_4	31.639216172339	4	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGAAGGATATACATGTT	8131	False	NA	NA	False	NA	NA	NA	122510605	122520842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122519369_122519460_122520240_122520323
22557	chr13	-	3634	10	FSM	ENSMUSG00000032621.9	ENSMUST00000210489.2	6330	10	428	2268	428	-4	multi-exon	FALSE	canonical	3	148	junction_3	29.6177290915966	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAGTCTTCAGTTTCTA	9178	False	NA	NA	False	NA	NA	NA	103900662	103878123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389
22558	chr9	-	1615	13	NNC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2023.0109212508	30	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996704	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89973975_89974056_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
22559	chr5	-	5066	18	FSM	ENSMUSG00000051306.8	ENSMUST00000053287.6	5151	18	85	0	85	0	multi-exon	FALSE	canonical	3	67	junction_4	13.3323240679149	84	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGTCTCAGTTTTACTC	NA	False	NA	NA	False	NA	NA	NA	143717950	143696079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143697098_143697704_143697744_143699290_143699593_143700356_143701836_143702331_143702427_143702528_143703237_143703678_143703833_143705248_143705350_143705481_143705623_143706031_143706144_143706902_143706986_143707387_143707459_143708041_143708110_143708863_143708967_143709649_143709761_143712243_143712445_143713534_143713782_143717917
22560	chr6	-	2314	15	Antisense	novelGene_ENSMUSG00000038279.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	61	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGAACTCAGAGGTCGCA	NA	False	NA	NA	False	NA	NA	NA	125121475	125108888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_125108961_125109164_125109280_125110479_125110527_125110675_125110764_125111507_125111730_125114014_125114179_125114278_125114472_125114595_125114683_125116597_125116689_125116766_125116902_125117491_125117636_125117750_125117841_125117996_125118121_125118235_125118471_125120968
22561	chr11	+	2001	10	NIC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	32	-2	combination_of_known_splicesites	FALSE	canonical	2	2	junction_7	238.174746513024	86	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAAGCCGGCGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	76836596	76878203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76859428_76859547_76862734_76862805_76877301
22562	chr5	+	2259	15	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1812	7127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAGGACTTGAAGGGCTC	664	False	NA	NA	False	NA	NA	NA	138162850	138170035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163157_138163288_138163429_138164174_138164343_138164946_138165027_138165305_138165700_138165810_138165896_138166101_138166235_138166319_138166434_138166593_138166745_138167071_138167210_138167359_138167541_138167610_138167734_138167819_138167992_138168631_138168658_138169987
22564	chr2	-	4357	23	FSM	ENSMUSG00000036281.14	ENSMUST00000114115.9	4368	23	11	0	-3	0	multi-exon	FALSE	canonical	3	40	junction_10	11.6217948571845	85	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATAGCCTTTGGTGATTT	NA	False	NA	NA	False	NA	NA	NA	26270650	26252776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26253033_26253649_26253781_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262742_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
22565	chr1	+	4998	35	FSM	ENSMUSG00000039318.13	ENSMUST00000069652.8	7052	35	21	2033	21	3	multi-exon	FALSE	canonical	3	69	junction_28	11.2668558845177	82	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAAAATTCAACTTTAT	NA	False	NA	NA	False	NA	NA	NA	184936334	185016923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999272_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
22566	chr2	-	3758	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	19	2343	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	67.116968793294	18	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	156681701	156672625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156675347_156676378_156676959_156679742_156679834_156680337_156680457_156681454
22569	chr6	-	3117	18	NNC	ENSMUSG00000015112.16	novel	3121	18	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	198.433310073467	1	124	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTATTGATTGCTTGCT	NA	False	NA	NA	False	NA	NA	NA	6217180	6041224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152412_6152524_6180970_6181114_6191263_6191318_6216995
22570	chr1	-	2164	9	NNC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	-3	-10	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	309.558556657702	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCTTTGAAGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	65225621	65197786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225555
22572	chr3	-	5262	22	FSM	ENSMUSG00000004591.17	ENSMUST00000043812.15	6207	22	327	618	-19	-618	multi-exon	FALSE	canonical	3	374	junction_13	40.9391451479165	334	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTTGGTTTTAAGTTT	NA	False	NA	NA	False	NA	NA	NA	142587438	142497280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_142499776_142499863_142499945_142500148_142500257_142504663_142504807_142505565_142505643_142506800_142506864_142509314_142509492_142515233_142515326_142515402_142515479_142515584_142515716_142516121_142516249_142516451_142516627_142517287_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142587371
22573	chr8	-	3782	24	NNC	ENSMUSG00000033703.10	novel	3838	24	NA	NA	-6	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	26.1757185568223	2	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTTTGTCTTCAGAAAAC	1237	False	NA	NA	False	NA	NA	NA	111629097	111609102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613265_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464_111626570_111629053
22574	chr11	-	2735	13	NNC	ENSMUSG00000078789.10	novel	2139	13	NA	NA	42	599	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	67.5559438950827	61	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCCCAATCTTGCCACAC	NA	False	NA	NA	False	NA	NA	NA	75081303	75067869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076714_75076788_75076942_75081224
22575	chr17	-	2145	7	NNC	ENSMUSG00000024327.17	novel	2320	7	NA	NA	-50	-2	intron_retention	FALSE	non_canonical	0	0	junction_5	227.56787754182	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGCAGCCTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	34250524	34247248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249406_34249648_34249709_34249797
22576	chr2	+	2346	12	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-14	-1	intron_retention	FALSE	canonical	3	83	junction_11	835.502441994344	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	NA	False	NA	NA	NA	130116335	130121226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
22577	chr1	+	2635	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113230.8	1569	6	397	-1463	50	-1	multi-exon	FALSE	canonical	3	1076	junction_1	501.781067797501	150	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCATGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	87142057	87155785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
22578	chr8	-	2638	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-24	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	195.288177374418	92	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTGTGACTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	40964369	40945581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964130
22581	chr5	+	2069	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_1	1045.0028294604	2	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATATATTCTCGCTGTG	331	False	NA	NA	False	NA	NA	NA	77099198	77115347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099253_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
22582	chrX	+	3772	7	NIC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	-2	-2	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	54.6669207311169	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAATGACCCTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	134739780	134745473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_134740012_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
22583	chr19	-	2809	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	-47	0	18	0	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	816	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	8992	False	NA	NA	False	NA	NA	NA	7460614	7403265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
22585	chr5	-	5223	11	FSM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	17	12	17	-12	multi-exon	FALSE	canonical	3	65	junction_1	10.2493902257647	91	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATAATCTACACTGAAG	NA	False	NA	NA	False	NA	NA	NA	52827033	52797440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826240_52826396_52826916
22586	chrX	-	680	3	ISM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	5534	1	2522	-1	3prime_fragment	FALSE	canonical	3	118	junction_2	30	1	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	NA	NA	NA	72120550	72117951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72118324_72118440_72118537_72120338
22588	chrX	+	3810	19	NNC	ENSMUSG00000035967.16	novel	3611	18	NA	NA	-6	1	intron_retention	FALSE	canonical	1	1	junction_1	22.6908911947036	1	96	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTAGGTGTATGTCTC	NA	False	NA	NA	False	NA	NA	NA	55500210	55553201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_55500496_55500590_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
22589	chr7	-	4201	5	FSM	ENSMUSG00000012640.17	ENSMUST00000107986.9	4184	5	-17	0	-9	0	multi-exon	FALSE	canonical	3	60	junction_4	14.2894191624432	105	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTCATATTGCTTT	NA	False	NA	NA	False	NA	NA	NA	42962696	42945946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960610_42962527
22590	chr4	-	2470	15	NNC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_13	268.68581340765	2	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGAAGTTCATGAGCTTC	-22	True	NA	NA	False	NA	NA	NA	48473452	48430864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468849_48469883_48470073_48473265
22591	chr1	-	2030	18	FSM	ENSMUSG00000026245.17	ENSMUST00000170217.8	2036	18	1	5	1	-5	multi-exon	FALSE	canonical	3	22	junction_1	335.563627493931	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCCTCATGGCTCTGCT	NA	False	NA	NA	False	NA	NA	NA	78465495	78394616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_78394860_78401829_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
22592	chr18	-	1444	1	FSM	ENSMUSG00000117929.2	ENSMUST00000237335.2	973	1	-56	-415	-56	415	mono-exon	FALSE	NA	NA	NA	NA	NA	67	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAATGGTGCTTAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	45204417	45202973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_45203000_45204400
22593	chr16	-	4175	26	Antisense	novelGene_ENSMUSG00000038084.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	32	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAAACGGGCCGCGGAT	NA	False	NA	NA	False	NA	NA	NA	29442101	29398127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_29398387_29404832_29405155_29405787_29405884_29407068_29407176_29408496_29408565_29416401_29416513_29421027_29421088_29424333_29424433_29426498_29426587_29427169_29427283_29429483_29429567_29429671_29429745_29430212_29430282_29430363_29430471_29430726_29430855_29432780_29432853_29432941_29433017_29433866_29433981_29434722_29434789_29435431_29435507_29436936_29437104_29439196_29439352_29439589_29439698_29440282_29440361_29440439_29441045_29441224
22594	chr13	-	1917	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	4	261	4	-261	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGGTACACGACTTGT	NA	False	NA	NA	False	NA	NA	NA	34314333	34310991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
22595	chr6	+	2280	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	229	6	-50	-6	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	44	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACGCTGGCTTTGTCGTT	2893	False	NA	NA	False	NA	NA	NA	122285907	122294633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
22596	chr3	-	2516	12	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	186.618451073284	51	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	157737331	157716555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722025_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
22599	chr14	-	4613	28	FSM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	-27	-4	-16	4	multi-exon	FALSE	non_canonical	0	0	junction_5	42.6759570646689	203	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGTATGTCTCTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	87378687	86892798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
22600	chrX	-	2604	12	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	457.213261992857	7	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	NA	False	NA	NA	NA	93585629	93579079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584131_93585497
22601	chr9	+	4267	10	NNC	ENSMUSG00000032076.21	novel	4482	10	NA	NA	103580	-52	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	109.488710732101	5	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAGTACTATAAAATA	1042	False	NA	NA	False	NA	NA	NA	47545250	47764626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_47545375_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47759464_47759597_47761569
22602	chr1	+	2079	6	NIC	ENSMUSG00000053332.14	novel	1614	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_3	1169.58580702743	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160864886_160865074_160865608_160865794_160865843_160866026
22603	chr4	+	2138	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-3	-86	multi-exon	TRUE	non_canonical	0	0	junction_1	20.3359538848849	1	67	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTGAGTATGAGTCTCT	923	False	NA	NA	False	NA	NA	NA	145237357	145351825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145239546_145239640_145343640_145343746_145347127_145347255_145348721_145349421_145349503_145349746_145350753_145351388_145351725
22604	chr2	+	2764	5	FSM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	4	-2	4	2	multi-exon	FALSE	canonical	0	0	junction_2	64.1190299365173	333	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCCTGTGTGAGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	156389507	156410078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_156389804_156391804_156391948_156392568_156393370_156397746_156397977_156408784
22605	chr11	+	3788	19	NIC	ENSMUSG00000018372.14	novel	2696	20	NA	NA	-325	3	intron_retention	FALSE	canonical	0	0	junction_10	14.8295875420278	37	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTGCTTTTGAATTTA	4771	False	NA	NA	False	NA	NA	NA	106679752	106709682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
22606	chr19	+	2557	18	NIC	ENSMUSG00000071646.10	novel	756	7	NA	NA	22	-262	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	219.349052700063	2	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCCATGTCTCATTTTT	4122	False	NA	NA	False	NA	NA	NA	8919891	8929405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8920084_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
22607	chr2	+	1596	5	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	229	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	668.283435377535	525	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCTTTCTTTGTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	143757468	143785242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046_143784560_143784643
22608	chr7	-	2080	11	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-20	0	intron_retention	FALSE	canonical	3	13	junction_8	135.864785724631	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976642	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125974238_125974376_125975845_125975912_125976008
22609	chr11	-	1918	12	ISM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	2916	2	2916	-2	3prime_fragment	FALSE	canonical	3	2404	junction_3	150.342309139362	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	8117	False	NA	NA	False	NA	NA	NA	88843375	88814847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231
22611	chr7	-	2046	12	NNC	ENSMUSG00000059119.10	novel	2281	15	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	319.716144764603	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTGAGATTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	143102837	143067324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089760_143102773
22612	chr2	-	3156	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_1	74	150	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGATCCACAAAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	130471947	130455765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130458663_130470408_130470556_130471835
22613	chr5	-	3885	4	NIC	ENSMUSG00000029213.12	novel	3360	6	NA	NA	-1	-26	intron_retention	FALSE	canonical	3	321	junction_3	24.1430919496424	3	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAACAAATACAAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	72325508	72316379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_72317237_72318250_72318407_72320064_72322850_72325421
22614	chrX	-	5277	37	NNC	ENSMUSG00000006678.7	novel	5346	37	NA	NA	-9	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	131.262036485125	1	229	21	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACCAGTTACTGTGTT	4308	False	NA	NA	False	NA	NA	NA	92675730	92348380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506914_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649010_92649453_92649570_92664110_92664183_92667420_92667522_92670093_92670219_92675674
22615	chr9	-	2914	13	NIC	ENSMUSG00000039542.17	novel	2525	14	NA	NA	-1354	464	combination_of_known_splicesites	FALSE	canonical	2	37	junction_1	38.7544800277622	24	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGCTGTGGCAACAT	9144	False	NA	NA	False	NA	NA	NA	49481203	49442111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_49443277_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125
22616	chr11	+	1107	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	486	33	-363	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGACAGTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120654105	120655212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120654100_120655200
22617	chr18	+	1685	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	1784	-143	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1577.23641037572	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTAGTTTGTGTGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	77863475	77870212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000_77870055_77870102
22618	chr13	-	2516	7	Antisense	novelGene_ENSMUSG00000038683.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTGGGACGTCACGTGAC	NA	False	NA	NA	False	NA	NA	NA	41166474	41154640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_41154888_41158210_41158373_41161489_41162841_41162923_41163020_41164656_41164757_41165807_41165933_41166039
22619	chr11	+	4311	6	NIC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	358	-13	intron_retention	FALSE	canonical	3	103	junction_2	26.2556660551585	179	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATACAAGTGTATGCTTTG	8134	False	NA	NA	False	NA	NA	NA	58198355	58205426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58200267_58200353_58200999_58201081_58201160_58201243_58202397_58204791_58204892_58205002
22620	chr11	-	2294	5	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-853	-45	intron_retention	FALSE	canonical	3	226	junction_2	78.1872751795329	17	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATGAACCTGCACGAGCG	NA	False	NA	NA	False	NA	NA	NA	120506204	120502498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120502532_120502826_120503910_120504204_120504250_120504466_120504552_120505156
22621	chr11	-	3163	9	FSM	ENSMUSG00000001323.18	ENSMUST00000065211.9	3699	9	95	441	0	-1	multi-exon	FALSE	canonical	3	15	junction_8	25.2140833662459	87	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACATCTCATTTATTTG	NA	False	NA	NA	False	NA	NA	NA	74816529	74797625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816444
22622	chr7	+	3840	5	ISM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	12413	26	-310	-26	3prime_fragment	FALSE	canonical	3	163	junction_1	36.6912796179147	1	163	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAGCTTGTGTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	41261097	41277931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
22623	chr11	-	1356	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6095.74878091281	6	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113078	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106827_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
22625	chr2	-	3098	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	5591	420	at_least_one_novel_splicesite	TRUE	canonical	3	13	junction_16	39.6401292095523	200	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	71168785	71104613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71168501
22626	chr10	-	2973	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	42	-3	-1	3	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	495	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	115198130	115176643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
22629	chr11	+	2491	7	NIC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	-47	-819	intron_retention	FALSE	canonical	3	2561	junction_3	180.426962754708	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGATAAACTGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	97206686	97219927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97217758_97218911_97219086_97219307
22630	chr3	-	2550	20	NIC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	78.4376174663344	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTGAGCTGTAGTTTT	NA	False	NA	NA	False	NA	NA	NA	36054827	36013984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030627_36030726_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
22632	chr11	-	2168	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	intron_retention	FALSE	non_canonical	0	0	junction_7	1766.69528977512	2	115	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676363_106677049_106677186_106677833_106677901_106679098
22634	chr11	+	1812	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	38	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4745.78223267777	1	47	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3121	False	NA	NA	False	NA	NA	NA	75623824	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623914_75642763_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655847_75655939
22635	chr3	+	3096	9	FSM	ENSMUSG00000034544.18	ENSMUST00000046542.13	3062	9	-30	-4	1	-1	multi-exon	FALSE	canonical	2	12	junction_2	112.554153632818	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGTGACTGCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	66893005	67265727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_66893140_66901849_66902046_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
22636	chr19	-	2649	22	NIC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	3	-157	combination_of_known_splicesites	FALSE	canonical	1	4	junction_21	184.089818361825	7	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTATAGATGTAGAATATT	NA	False	NA	NA	False	NA	NA	NA	37340007	37247985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37339912
22638	chr8	-	2492	13	NNC	ENSMUSG00000015023.8	novel	2547	12	NA	NA	40	-46	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	137.243295727778	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCTGCTTACTAGACT	7756	False	NA	NA	False	NA	NA	NA	111724362	111701673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111715171_111715233_111716105_111716242_111717108_111717160_111719688_111719738_111724298
22639	chr15	-	1513	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	23	-24	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	4701.41214822738	3	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTAAAAGCTTTAAGAAAA	181	False	NA	NA	False	NA	NA	NA	98832296	98829329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829517_98829572_98830444_98830572_98830722_98830853_98831077_98832213
22640	chr1	+	2481	9	NNC	ENSMUSG00000038235.5	novel	2518	10	NA	NA	-21	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	81.7212296468916	721	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGAATTTTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	171265125	171292162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289485_171290452_171290509_171290626
22641	chr1	-	2238	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-5	21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2649.23179442489	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGCCTTCTAAGGACATT	NA	False	NA	NA	False	NA	NA	NA	86287091	86278264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86280981_86281525_86281578_86282741_86282867_86283773_86283916_86284092_86284165_86284277_86284464_86284678_86285175_86285828_86285946_86286927
22643	chr15	-	3457	7	ISM	ENSMUSG00000022360.9	ENSMUST00000228783.2	3472	21	15921	-1351	-4618	-7	intron_retention	FALSE	canonical	3	356	junction_6	14.3265487818944	1	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTACTCGTTTCTAG	8905	False	NA	NA	False	NA	NA	NA	57966790	57957448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_57958968_57959972_57960102_57960647_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57965772
22644	chr1	-	2240	7	ISM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	1609	-32	1609	32	3prime_fragment	FALSE	canonical	3	343	junction_5	37.0135110466435	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTTCCTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	13195778	13183648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389
22646	chr1	+	2529	9	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-26	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	822.591940150157	3	93	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATGTTTTTTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	4928010	4968130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948409_4959679_4959826_4960962_4961020_4962137_4962293_4963650_4963787_4965156_4965229_4966578
22647	chr19	-	6391	16	FSM	ENSMUSG00000035173.15	ENSMUST00000118592.8	6445	16	36	18	36	-18	multi-exon	TRUE	canonical	3	40	junction_2	9.58239125804317	65	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTGCCTGTTTACCAAGT	5233	False	NA	NA	False	NA	NA	NA	56810586	56775930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_56779479_56780372_56780593_56781727_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
22648	chr1	+	2671	6	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	1289	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	80.961719349332	9	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	1390	False	NA	NA	False	NA	NA	NA	82318058	82423087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355339_82421245
22649	chr18	-	1998	13	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1880.95221157323	2	74	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	NA	False	NA	NA	NA	64649564	64633283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638457_64643402_64643603_64644681_64644772_64644855_64644949_64645054_64645129_64648396_64648480_64649486
22650	chr10	+	3675	8	NNC	ENSMUSG00000019810.16	novel	2007	8	NA	NA	-11	1733	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	57.9105573540889	258	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTGTTCTCAACATGGG	NA	False	NA	NA	False	NA	NA	NA	13376816	13393020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390853
22652	chr10	-	2838	11	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	162	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAGGCGGCTGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	128198336	128173674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173827_128185619_128185672_128186300_128186409_128187066_128187132_128188540_128188673_128188889_128189079_128194200_128194401_128195036_128195167_128195300_128195400_128195810_128196014_128196828
22653	chr5	-	313	3	NNC	ENSMUSG00000028933.12	novel	3247	3	NA	NA	-24	-1576	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	2.5	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACGGTAAAATAACCAGAG	NA	False	NA	NA	False	NA	NA	NA	25910795	25903253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25903331_25908295_25908412_25910675
22654	chrX	+	5171	6	NIC	ENSMUSG00000043384.16	novel	5843	11	NA	NA	-1396	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	60.7302231183124	2	225	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGAAATTGCCCCTTC	9842	False	NA	NA	False	NA	NA	NA	134696940	134704213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_134697086_134698301_134698379_134698536_134698614_134698771_134698844_134699139_134699223_134699496
22655	chr1	-	639	5	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1366	13	-448	-2	3prime_fragment	FALSE	canonical	3	5309	junction_1	708.503484465673	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAAATTGAAATGTGTCG	NA	False	NA	NA	False	NA	NA	NA	16173520	16171531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391
22656	chr1	+	2247	1	FSM	ENSMUSG00000101523.3	ENSMUST00000190422.3	2633	1	402	-16	402	16	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	156351983	156354230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_156352000_156354200
22657	chr17	-	2777	8	NNC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-1	552	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	153.326382569461	161	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTATAGGTCTGGGTA	NA	False	NA	NA	False	NA	NA	NA	46985279	46976697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46978168_46978369_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
22658	chr15	-	3110	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	251.703872648342	2	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	83033487	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022672_83033395
22661	chr15	-	1608	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	131	4	4	-4	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	24	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	162	False	NA	NA	False	NA	NA	NA	98832315	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
22662	chrX	+	3410	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	312.456235988793	1	113	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGACTCAGTCTTTCTG	NA	False	NA	NA	False	NA	NA	NA	95139647	95212158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075_95211605_95212036
22663	chr18	+	4778	6	FSM	ENSMUSG00000042439.14	ENSMUST00000169679.8	5003	6	221	4	134	3	multi-exon	FALSE	canonical	3	9	junction_1	35.5831420759887	91	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGCTTCTTCAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	65715817	65822007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_65715881_65715967_65716078_65756054_65758406_65815965_65816079_65818595_65818762_65820032
22664	chr13	-	1738	16	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-59	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	3313.55190023569	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5066	False	NA	NA	False	NA	NA	NA	58550015	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542356_58542439_58542488_58543002_58543108_58543422_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
22665	chr7	+	2258	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	-57	-2	-57	2	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1539	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTTTCTCTTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	121758604	121769098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
22667	chr13	+	2058	6	NNC	ENSMUSG00000113566.2	novel	886	4	NA	NA	8	962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	204.034898975641	89	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATAAAACTTTGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	62245569	62260823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62245653_62250218_62250513_62254561_62254689_62254881_62254943_62258981_62259858_62260206
22669	chr8	-	4485	21	FSM	ENSMUSG00000031537.16	ENSMUST00000063401.10	3977	21	27	-535	1	-20	multi-exon	FALSE	canonical	3	51	junction_9	16.2802794816305	90	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGCTCAGTGTAAATTC	NA	False	NA	NA	False	NA	NA	NA	23196578	23149248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
22670	chr1	-	1861	4	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	1016	-13	intron_retention	FALSE	canonical	3	24	junction_3	684.651411709313	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATATCTCACGAGCTT	3354	False	NA	NA	False	NA	NA	NA	93728612	93720310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93727321_93728523
22671	chr2	-	3358	15	NIC	ENSMUSG00000027104.19	novel	4195	14	NA	NA	-5	855	combination_of_known_junctions	FALSE	canonical	3	36	junction_12	95.5978236025853	1	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAGATGTGTGTAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	73722943	73647754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
22672	chr13	-	1658	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	17	-85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	646.841602845393	4	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTCTATCCCTGAATCA	NA	False	NA	NA	False	NA	NA	NA	97334786	97312923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318439_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
22674	chr1	+	2720	7	FSM	ENSMUSG00000025979.14	ENSMUST00000159311.8	1816	7	57	-961	1	0	multi-exon	FALSE	canonical	3	33	junction_1	175.833886255055	20	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTATTCTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	55170446	55194058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55170519_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
22675	chr16	+	3192	6	ISM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	-8	2415	6	-2415	5prime_fragment	FALSE	canonical	0	0	junction_1	195.277853326997	16	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGGTTTGCTGGCTAGC	NA	False	NA	NA	False	NA	NA	NA	17577532	17608813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000
22676	chr2	-	1077	8	Antisense	novelGene_ENSMUSG00000039041.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCCGCTTGAACTCACAG	NA	False	NA	82	True	NA	NA	NA	179818079	179814691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_179814762_179815698_179815825_179816098_179816185_179816651_179816736_179816948_179817184_179817388_179817545_179817642_179817749_179817865
22677	chr6	+	2895	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	4	4	4	-4	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	304	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGCCAGTCGTTTGCTGT	9692	False	NA	NA	False	NA	NA	NA	91450688	91465441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
22678	chr4	-	2951	8	ISM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	10565	-7	10565	7	3prime_fragment	TRUE	canonical	3	666	junction_4	65.0349984270636	6	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATGGGATGTTTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	132227247	132219335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076
22679	chr11	+	1889	14	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-9	-787	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	305.460095302947	9	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATTGGATTCTGTGTTCA	NA	False	NA	NA	False	NA	NA	NA	3913999	3929217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919542_3923251_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
22680	chr13	-	1599	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	4	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312203_34312302_34312515_34312854_34312966_34313228_34313338_34314159
22681	chr4	+	4329	20	NNC	ENSMUSG00000028309.15	novel	4312	20	NA	NA	16	-3	intron_retention	FALSE	non_canonical	0	0	junction_4	29.66367337343	1	96	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCTTGTGTTTGTGGTG	17	False	NA	NA	False	NA	NA	NA	49632021	49656883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_49632490_49633253_49633411_49637905_49638074_49638186_49638333_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654595_49655410_49655513_49655800
22682	chr1	+	4220	20	NNC	ENSMUSG00000033257.15	novel	10019	20	NA	NA	-30	-4	intron_retention	FALSE	canonical	0	0	junction_19	33.8072588052098	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAGAGCCATGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	74700945	74737132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74701049_74712002_74712170_74718056_74719623_74720458_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736413_74736603
22684	chr8	+	3419	6	NNC	ENSMUSG00000031562.17	novel	2493	6	NA	NA	8	-7	intron_retention	FALSE	non_canonical	0	0	junction_2	157.361240462828	1	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACCAAGACGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	48563207	48594691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_48563284_48564693_48564842_48565013_48565139_48582706_48582842_48590292_48591914_48593377
22685	chr7	-	2928	23	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-4987	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	300.91714147429	3	78	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGTGGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	44192829	44182169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44187435_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664
22686	chr5	+	4377	37	FSM	ENSMUSG00000037890.14	ENSMUST00000041892.13	4401	37	19	5	0	0	multi-exon	FALSE	canonical	3	17	junction_26	8.39311887467611	32	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAACATTTTCCTGGATTT	8571	False	NA	NA	False	NA	NA	NA	65357059	65417753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462_65401588_65403138_65403252_65404803_65404873_65406132_65406211_65408241_65408339_65409621_65409747_65412393_65412476_65413623_65413775_65414344_65414469_65415078_65415156_65415446_65415572_65417456
22687	chr4	+	2738	20	FSM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	-75	10	-19	-10	multi-exon	FALSE	canonical	3	183	junction_2	84.1228490935262	73	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGAAAGAAGTGTCTAACT	3928	False	NA	NA	False	NA	NA	NA	155709291	155734385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
22688	chr2	+	1903	11	NIC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	7	0	intron_retention	FALSE	canonical	3	1724	junction_1	118.679568587015	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	90884406	90889777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90884677_90884919_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
22689	chr2	-	2517	12	NNC	ENSMUSG00000010914.11	novel	2506	11	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	137.186306330581	702	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTCTACTTTGATATGAC	NA	False	NA	NA	False	NA	NA	NA	102903800	102851427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102864681_102864759_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
22690	chr16	-	2015	17	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	17	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	298.29295583369	1	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCCCGTGGCAGACGTTT	NA	False	NA	NA	False	NA	NA	NA	3895674	3857844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863800_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
22693	chr8	+	2979	13	NNC	ENSMUSG00000070002.8	novel	3072	12	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	42.1801691161459	23	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAACCTCTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	70992344	71045502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147_71044589_71044668
22694	chr6	+	1621	6	NNC	ENSMUSG00000029910.15	novel	7557	6	NA	NA	-10	295	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	357.628857896004	170	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACCATGTCTGTATC	NA	False	NA	NA	False	NA	NA	NA	66512363	66518299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66512543_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
22695	chr18	+	2106	3	FSM	ENSMUSG00000024646.15	ENSMUST00000159846.2	773	3	-46	-1287	-16	1287	multi-exon	FALSE	canonical	3	973	junction_1	30	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTAACACGTCATTTCAT	NA	False	NA	NA	False	NA	NA	NA	84869485	84892994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_84869733_84889629_84889759_84891264
22696	chr18	+	1756	2	FSM	ENSMUSG00000024646.15	ENSMUST00000159837.2	623	2	-1135	2	-1135	0	multi-exon	FALSE	canonical	3	946	junction_1	0	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACCATATGTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	84894590	84897987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_84895987_84897627
22697	chr4	+	1969	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-16	0	multi-exon	TRUE	non_canonical	0	0	junction_1	47.4191040464856	4	84	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216478	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447362_147536170_147536264_147550014_147550159_147661528_147661587_147665698_147665826_147667290_147667443_147668522
22698	chr7	-	2663	8	Antisense	novelGene_ENSMUSG00000058638.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAATGGCGCTCGCCCGT	NA	False	NA	NA	False	NA	NA	NA	12583851	12568965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_12569090_12569368_12569455_12570219_12570346_12571014_12571110_12578356_12578832_12580721_12580822_12581896_12582025_12582322
22699	chr2	-	1849	5	FSM	ENSMUSG00000078923.11	ENSMUST00000151365.8	924	5	-5	-920	-5	-2	multi-exon	FALSE	canonical	3	48	junction_4	1117.10764924424	3878	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTCGGTGGTTTTATTTT	9421	False	NA	NA	False	NA	NA	NA	167473912	167449765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167471089_167471209_167473859
22700	chr5	-	2022	6	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	0	-525	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3827.99726227697	5	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGTTAAATGACTTTCA	6788	False	NA	NA	False	NA	NA	NA	148989826	148984036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985158_148985277_148985653_148986612_148986712_148987104_148987251_148987397_148987562_148989709
22701	chr11	+	2342	14	NIC	ENSMUSG00000007850.17	novel	2427	15	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_2	179.686281511176	1	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50267762	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50267975_50268140_50268268_50269117_50269255_50270294_50270451_50270647_50270792_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
22702	chr8	-	3441	29	FSM	ENSMUSG00000036686.17	ENSMUST00000040383.9	3471	29	19	11	19	-2	multi-exon	TRUE	canonical	3	61	junction_17	12.7601500215095	188	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGCCTCAGCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	84874546	84859467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
22703	chrX	+	2675	9	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	-16	-4	combination_of_known_junctions	FALSE	canonical	3	665	junction_4	23.6748812035034	41	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTGTTGGGCTTCGTGT	NA	False	NA	NA	False	NA	NA	NA	73340732	73348291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
22704	chr4	-	3993	18	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	0	916	intron_retention	FALSE	non_canonical	0	0	junction_17	124.774842198557	2	143	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACCTTTACCCCAAAAGT	NA	False	NA	NA	False	NA	NA	NA	115980856	115953196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980265
22705	chr7	-	2942	6	NIC	ENSMUSG00000047554.15	novel	3840	7	NA	NA	-6	-4	intron_retention	FALSE	canonical	3	346	junction_5	24.5324275195098	17	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATTGTATCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	109585488	109572695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_109574159_109575801_109575941_109577916_109578690_109580195_109580325_109581862_109581981_109585168
22707	chr8	+	3141	19	NNC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-4	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	88.8313876515433	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCAGGGCTCACCTCATT	4580	False	NA	NA	False	NA	NA	NA	3681147	3692792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3690520_3690734_3691207_3691734_3691821_3691897_3692056_3692645
22708	chrX	+	3050	23	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12825	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.288523056104	1	63	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTCTTCAGTTATTTT	7994	False	NA	NA	False	NA	NA	NA	159932920	160039898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933160_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992607_159992680_160007455_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
22709	chr9	-	2556	9	FSM	ENSMUSG00000059890.17	ENSMUST00000138559.9	3374	9	46	772	6	-772	multi-exon	FALSE	canonical	3	42	junction_4	11.548132965982	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAATTGAGCCGAAGGAT	5368	False	NA	NA	False	NA	NA	NA	44876830	44858124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
22710	chr6	+	2214	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113249.8	1614	9	-2	-598	-2	-5	multi-exon	FALSE	canonical	1	13	junction_1	300.377991037959	1107	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTCTTTGTCGTTATT	NA	False	NA	NA	False	NA	NA	NA	106746099	106759430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_106746153_106746816_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
22711	chr1	+	3083	13	NNC	ENSMUSG00000026280.18	novel	4173	13	NA	NA	5	-1180	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	94.1694689848514	1265	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAAGTCTTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	93682631	93717152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703518_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
22712	chr9	+	3462	22	ISM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	3708	532	-545	-13	3prime_fragment	FALSE	canonical	2	160	junction_13	34.211294895293	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTAGATTAGCAGCACTA	NA	False	NA	NA	False	NA	NA	NA	57041681	57049474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
22714	chr1	-	2400	14	NIC	ENSMUSG00000026209.16	novel	2488	15	NA	NA	6	-2	intron_retention	FALSE	canonical	3	522	junction_13	124.199210090009	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTCTCTGTGCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	75294275	75285210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
22716	chr10	-	2710	11	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	143	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGGTAGACAAACCGGCA	NA	False	NA	NA	False	NA	NA	NA	128198194	128173656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173816_128185616_128185680_128186310_128186409_128187066_128187132_128188540_128188673_128188889_128189079_128194200_128194399_128195036_128195167_128195300_128195403_128195810_128196030_128196839
22717	chr2	+	2498	7	NNC	ENSMUSG00000027479.15	novel	7336	7	NA	NA	25	-4764	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	433.38076663471	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTCAAGAGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	153583218	153610466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153583291_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
22718	chr7	+	2807	5	Intergenic	novelGene_2944	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	31.9168842464298	2	56	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAACAACTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	42903191	42915061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903292_42906867_42906982_42910062_42910237_42910522_42910591_42912710
22719	chr8	-	4456	31	NNC	ENSMUSG00000038102.16	novel	4332	30	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_27	39.2614597566395	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACATCTGTCGTAAATAC	4062	False	NA	NA	False	NA	NA	NA	47986494	47943166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47981604_47981754_47982363_47982534_47983686_47983913_47986353
22720	chr5	-	2324	7	NIC	ENSMUSG00000028959.15	novel	2552	9	NA	NA	-327	1	intron_retention	FALSE	canonical	3	1095	junction_1	131.171219743086	3	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTAAGTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	24649283	24646039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646822_24646921_24647082_24647179_24648142_24648274_24648455_24648892
22721	chr11	+	2094	13	NNC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	183.370962047491	100	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	4334	False	NA	NA	False	NA	NA	NA	102321343	102327631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326573_102326769_102326849_102327075_102327160
22722	chr2	+	2852	21	FSM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	-39	4	-39	-4	multi-exon	TRUE	canonical	3	179	junction_7	45.0891062231222	431	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCCTCCTGTTTCTTTG	6861	False	NA	NA	False	NA	NA	NA	104420828	104495770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
22723	chr8	+	2802	18	FSM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	23	0	-14	0	multi-exon	FALSE	canonical	3	176	junction_7	26.4246660485719	293	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAGTTATGTATCCAG	NA	False	NA	NA	False	NA	NA	NA	125247528	125278747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
22724	chrX	+	1583	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	107	135	44	-97	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	1	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACGTATGTAGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	105230812	105247170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
22727	chr11	-	2952	11	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	1	-1056	combination_of_known_junctions	FALSE	canonical	3	33	junction_7	818.526603110736	71	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGGAACTGAAGAAGAGCA	5920	False	NA	NA	False	NA	NA	NA	100510456	100475496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100488881_100489440_100489555_100490010_100490136_100492553_100492643_100510353
22728	chr14	+	3603	10	NIC	ENSMUSG00000004561.15	novel	3404	11	NA	NA	1	4	intron_retention	FALSE	canonical	3	141	junction_7	17.8207813216363	8	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGAGGTGGATGTTCTGA	NA	False	NA	NA	False	NA	NA	NA	52122392	52129321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52124437_52124679_52124762_52125429_52125504_52126198_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
22729	chr17	-	2819	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.9463334554289	298	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATATTGATTGAACAAG	NA	False	NA	NA	False	NA	NA	NA	22580381	22556988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577970_22578420_22578506_22580148
22730	chr15	+	2557	17	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	16986	124	-6011	-124	3prime_fragment	FALSE	canonical	3	1727	junction_9	134.625855962924	1	98	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTTGATGACAGCACT	1156	False	NA	NA	False	NA	NA	NA	81773495	81799210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
22732	chr5	+	4806	5	ISM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	3	5	3	4	intron_retention	FALSE	canonical	3	1920	junction_3	63.3378836084693	16	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCACCATGTTGTATTTGG	4604	False	NA	NA	False	NA	NA	NA	29940995	29962962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539
22733	chr9	+	3437	21	NNC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	32	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	658.437081276564	2	128	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAATGCCTGTCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	21279198	21316653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308769_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314687_21315355_21315488_21315991
22734	chr7	-	3912	20	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-13	1	intron_retention	FALSE	canonical	0	0	junction_15	41.580479651979	7	76	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATGATGTAGATCCAGT	NA	False	NA	NA	False	NA	NA	NA	140697732	140681129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688856_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
22735	chr11	-	5211	6	NIC	ENSMUSG00000020419.12	novel	1915	12	NA	NA	140	4490	intron_retention	FALSE	canonical	2	4	junction_2	94.1373464678073	117	188	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTATAGCAATTCCTTA	NA	False	NA	NA	False	NA	NA	NA	4390942	4369577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_4374308_4374755_4374820_4375505_4375627_4377243_4377386_4385001_4385090_4390876
22736	chr7	-	2166	10	Genic_Genomic	ENSMUSG00000108688.2	novel	1016	1	NA	NA	-1829	7554	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	25	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTCAAACGCGGCGCTG	NA	False	NA	NA	False	NA	NA	NA	121769096	121758697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_121759173_121759757_121759926_121760727_121760875_121761615_121761712_121763245_121763461_121766817_121766974_121767783_121767863_121768048_121768214_121768308_121768485_121768607
22738	chr11	-	3322	3	FSM	ENSMUSG00000018931.4	ENSMUST00000019075.4	4179	3	47	810	47	-810	multi-exon	TRUE	canonical	3	156	junction_2	31	245	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGCTCTCTGCTTTTCTCT	6671	False	NA	NA	False	NA	NA	NA	60804591	60793881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60796948_60797707_60797827_60804454
22739	chr13	+	1674	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-17	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	564.769198818317	5	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588110	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615131_3615661
22741	chrX	-	6100	33	FSM	ENSMUSG00000034055.17	ENSMUST00000052012.14	6115	33	12	3	12	-3	multi-exon	TRUE	canonical	3	40	junction_24	10.1886502418132	61	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGTCTGGTGTTACTGC	NA	False	NA	NA	False	NA	NA	NA	101687840	101557583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101559822_101560382_101560584_101561048_101561103_101564359_101564531_101571672_101571724_101575682_101575722_101576008_101576125_101580789_101580892_101584717_101584848_101584977_101585057_101588279_101588360_101588913_101589071_101598489_101598630_101599131_101599224_101600701_101600879_101603170_101603341_101612895_101612975_101617073_101617219_101618570_101618681_101629682_101629818_101636232_101636312_101641007_101641116_101641791_101641888_101652647_101652771_101653757_101653812_101659516_101659664_101660922_101661022_101664943_101665025_101669193_101669277_101680148_101680318_101682686_101682735_101685826_101685986_101687452
22742	chr10	-	2758	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	60	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	877.945092118571	1	101	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAGTGCTTATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86541313	86526705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538777_86538890_86539323_86539466_86540157_86540261_86541170
22743	chrX	-	2739	5	ISM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	61	9871	61	127	5prime_fragment	FALSE	canonical	3	191	junction_2	21.2132034355964	230	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTTTGTTGGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	161612389	161571785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
22744	chrX	+	3917	30	Antisense	novelGene_ENSMUSG00000031161.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	98	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTTCCCAGACGCCTA	1969	False	NA	NA	False	NA	NA	NA	7796371	7814066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_7796776_7797021_7797157_7797254_7797401_7797526_7797620_7797703_7798199_7798301_7798462_7800406_7800566_7802312_7802505_7802624_7802689_7803179_7803317_7803544_7803610_7803659_7803715_7803874_7803995_7804081_7804251_7804464_7804537_7804634_7804731_7805680_7805771_7805843_7805903_7805996_7806065_7806156_7806284_7808082_7808154_7808273_7808376_7809624_7809724_7809879_7809977_7810812_7810853_7810951_7811038_7812901_7812994_7813144_7813271_7813363_7813484_7813888
22746	chr11	-	2156	14	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTCCACAAAAAGCCTCG	1335	False	NA	NA	False	NA	NA	NA	50277346	50268632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50268685_50269116_50269252_50270291_50270449_50270645_50270790_50272283_50272423_50273361_50273541_50273624_50273697_50273752_50273889_50274005_50274142_50274506_50274566_50274656_50274716_50275468_50275563_50275966_50276016_50276601
22747	chr4	-	2461	15	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	146	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	96.6781162583617	79	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTACCTGACTTGTCT	-5	True	NA	NA	False	NA	NA	NA	41124309	41114434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115035_41119507_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
22748	chr18	+	2670	7	NIC	ENSMUSG00000060450.15	novel	2886	8	NA	NA	7	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	88.0916505061001	1	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTGAAGTAGACACGGT	1004	False	NA	NA	False	NA	NA	NA	38429765	38450893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38449577
22749	chr13	+	3292	11	NNC	ENSMUSG00000093930.3	novel	3464	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	244.076709253464	1	81	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120151976	120169618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167031_120167924
22750	chr2	+	5241	9	NIC	ENSMUSG00000027281.17	novel	5089	8	NA	NA	51	-5	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	9.69535971483266	39	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTAAGTTTGTTGTGC	NA	False	NA	NA	False	NA	NA	NA	136734138	136913865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_136734282_136747462_136747521_136788961_136789170_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
22751	chr10	-	2318	8	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-3	-1	intron_retention	FALSE	canonical	2	3	junction_3	406.576799482645	152	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAGAGTGAATCTCTT	8244	False	NA	NA	False	NA	NA	NA	128540903	128533813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128535080_128535340_128535545_128535844_128535898_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
22752	chr18	+	1956	11	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	337.083609806232	2	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	1006	False	NA	NA	False	NA	NA	NA	84953112	84999598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84953345_84973298_84973512_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
22753	chr5	+	1943	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	293	109	-136	87	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAACTTTTTAAAAAGAGT	620	False	NA	NA	False	NA	NA	NA	77099487	77115247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
22754	chr7	+	2391	1	NIC	ENSMUSG00000012848.16	novel	794	6	NA	NA	6	1350	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTAGTGATGTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	12656250	12658641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12656200_12658600
22755	chr2	-	1768	9	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	5487	-570	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	486.978936274455	1	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGAGGAAAAGGCCTGT	NA	False	NA	NA	False	NA	NA	NA	154910880	154901799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909305_154910747
22756	chr2	+	3232	11	NNC	ENSMUSG00000027397.15	novel	3316	11	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	201.88521491184	22	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTGCTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	129040720	129053535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129046165_129046240_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
22757	chr7	-	3543	13	NIC	ENSMUSG00000044465.20	novel	3521	13	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	82	junction_12	109.915118765952	164	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTCTGTGCTCATTCTTC	NA	False	NA	NA	False	NA	NA	NA	105049220	105027819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
22758	chr16	-	2270	2	Antisense	novelGene_ENSMUSG00000092029.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCGCAGGCGCGGCTCCC	NA	False	NA	NA	False	NA	NA	NA	61200080	61197452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_61199666_61200023
22759	chr1	-	3018	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111289.8	3041	7	23	0	2	0	multi-exon	FALSE	canonical	3	17	junction_6	46.1904270986484	700	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCTTGACTTGGTTCA	901	False	NA	NA	False	NA	NA	NA	171173191	171168138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
22760	chr13	-	3004	6	NNC	ENSMUSG00000021302.11	novel	652	5	NA	NA	43	196	intron_retention	FALSE	non_canonical	0	0	junction_1	124.094157799632	1206	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAATGTTTTTTTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	14237915	14226233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_14228213_14228349_14229041_14229734_14229806_14232380_14232474_14235547_14235593_14237790
22761	chr5	-	3634	4	NIC	ENSMUSG00000046798.15	novel	3597	4	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	26.5455583227527	19	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	5564838	5555108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_5558455_5561070_5561195_5563161_5563252_5564764
22762	chr11	+	3178	23	NNC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	253.782562133365	1	124	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCCTGCCTGCTGTCGT	NA	False	NA	NA	False	NA	NA	NA	6241626	6306638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6241694_6246951_6247200_6263787_6263995_6267001_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299322_6299494_6299841_6299914_6300605_6300739_6302129_6302199_6304928_6305093_6305290_6305311_6306352
22763	chr6	+	2622	8	NNC	ENSMUSG00000030105.9	novel	4443	7	NA	NA	8	-1752	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	180.053846821172	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTGCATTTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	108760067	108800487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463_108799056_108799116
22764	chr6	+	1475	9	ISM	ENSMUSG00000030007.9	ENSMUST00000204489.3	1561	11	8992	-101	306	-92	3prime_fragment	FALSE	canonical	3	5813	junction_3	251.985831694959	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5997	False	NA	NA	False	NA	NA	NA	85438025	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
22765	chr4	+	3415	4	FSM	ENSMUSG00000052137.12	ENSMUST00000063839.6	3327	4	-60	-28	-58	28	multi-exon	FALSE	canonical	2	9	junction_1	21.6692306175267	91	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTTGTATTTGTGTAAC	-4	True	NA	NA	False	NA	NA	NA	12089380	12096271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_12089524_12089662_12089728_12092522_12092573_12093114
22766	chr2	-	2683	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110425.9	4153	9	0	1470	0	1	multi-exon	FALSE	canonical	3	222	junction_1	62.4468524026632	233	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCATGCAGACTCATGTT	NA	False	NA	NA	False	NA	NA	NA	126517488	126470831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126472303_126481148_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
22767	chr11	-	3793	18	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	61	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.697333563856	1	182	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACACCCAATCAGTGATT	NA	False	NA	NA	False	NA	NA	NA	40624157	40592223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40593669_40594596_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
22769	chr8	+	1816	12	NIC	ENSMUSG00000005481.19	novel	1794	11	NA	NA	-34	2	combination_of_known_junctions	FALSE	canonical	3	43	junction_5	1041.59007498033	61	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCTCCAGCCCCATC	NA	False	NA	NA	False	NA	NA	NA	84442142	84449906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
22770	chr6	-	2076	7	NNC	ENSMUSG00000079477.10	novel	2159	6	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	683.24414052047	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGAACAGCTGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	88022242	87976097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87977513_87981152_87981282_87981974_87982005_87982067_87982194_87989288_87989416_87990619_87990681_88022054
22771	chr7	+	3221	14	NNC	ENSMUSG00000030523.19	novel	2928	14	NA	NA	-40	-2	intron_retention	FALSE	canonical	0	0	junction_7	384.388332981822	1	83	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCAAAATCTTAGATGAAT	NA	False	NA	NA	False	NA	NA	NA	63835257	63874510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858618_63858741_63859704_63859778_63860585_63861107_63867237_63867409_63868855_63868991_63869989_63870041_63873438
22772	chr19	+	2387	4	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1224.23754049431	4	54	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAATGTCTCGTGGTGTT	1467	False	NA	NA	False	NA	NA	NA	44282512	44295297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283387_44291661_44293237_44294867
22773	chr17	-	3081	15	Antisense	novelGene_ENSMUSG00000002372.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.257539376818856	21	32	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGCCCCCGGGCTCCGA	5525	False	NA	NA	False	NA	NA	NA	57018761	56980356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56980410_56993003_56993060_57003599_57003637_57003715_57003787_57008019_57008086_57008445_57008541_57009761_57009889_57012454_57012569_57013859_57013961_57014157_57014952_57015168_57015279_57016211_57016331_57016984_57017230_57017589_57017775_57017853
22774	chr12	-	3518	19	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	64	-445	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	155.797946071185	1	120	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTAGGCCAAAATGCCAATA	2742	False	NA	NA	False	NA	NA	NA	59058739	59005613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59037716_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
22776	chr10	+	2467	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	1	-10	intron_retention	FALSE	non_canonical	0	0	junction_7	576.659991296544	1	92	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATAACCTCTGTCTTCC	1590	False	NA	NA	False	NA	NA	NA	79690467	79700183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695800_79696628_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699099_79699412
22777	chr1	-	2888	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	160	112	-1	-112	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	1	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAATTTTATCTAAGCA	NA	False	NA	NA	False	NA	NA	NA	151376546	151345268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
22778	chr1	+	2192	12	NIC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	1742	-7	intron_retention	FALSE	canonical	3	546	junction_2	39.6984501227537	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAAGCTTTTATTTCTA	NA	False	NA	NA	False	NA	NA	NA	131082659	131101208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
22780	chr8	-	2886	16	NIC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	374	junction_9	46.6050068840963	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACATCCCGGTCTTGACC	1054	False	NA	NA	False	NA	NA	NA	3671273	3660092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661835_3662962_3663291_3663367_3663500_3663589_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
22781	chr19	+	2836	11	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	384.528334456643	3	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATTGGATGTCTGAATT	1888	False	NA	NA	False	NA	NA	NA	8875459	8894031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882566_8890961_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
22782	chr10	+	2198	6	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	15362	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	619.754983844422	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128189040	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128189081_128194196_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
22784	chr3	-	1989	11	NIC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-4	0	intron_retention	FALSE	canonical	3	875	junction_10	61.0908340096941	2264	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	153	False	NA	NA	False	NA	NA	NA	153650108	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644805_153647519_153647608_153650032
22785	chr1	+	4146	8	NNC	ENSMUSG00000025958.15	novel	8364	8	NA	NA	2	-877	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	32.9842262858092	1	118	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTCTTTTCCCCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	64571992	64639539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609327_64609436_64613231_64613415_64615337_64615489_64636392
22786	chr9	+	2926	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	19	900	2	-552	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	12	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTGTGGTTCATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	119723962	119754752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
22788	chr11	-	2806	6	ISM	ENSMUSG00000025140.16	ENSMUST00000141254.8	840	7	133	-1806	133	-2	3prime_fragment	FALSE	canonical	3	976	junction_5	20.202970078679	5	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCCCCAGAGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	120534336	120530243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984
22791	chr6	+	2578	12	Antisense	novelGene_ENSMUSG00000030177.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	338	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGTTCACCCAGCAGTAC	NA	False	NA	NA	False	NA	NA	NA	120301283	120334410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_120302452_120306051_120306207_120306293_120306423_120308774_120308993_120311729_120311876_120315026_120315122_120316095_120316158_120318931_120319030_120325345_120325492_120327167_120327350_120330959_120331013_120334284
22792	chr19	+	2390	11	NNC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	122.995934892174	20	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTAGTATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	38043472	38062872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745_38061796_38061946
22793	chr6	+	2012	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	465.928478351319	404	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2952	False	NA	NA	False	NA	NA	NA	122285966	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286_122293791_122294003
22795	chr17	-	2447	2	FSM	ENSMUSG00000024248.15	ENSMUST00000235085.2	903	2	-1236	-308	-1236	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGATGTTTTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	83813171	83809362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_83810167_83811528
22796	chr3	+	2399	11	NNC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	0	-298	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	55.1311164407179	163	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGCCACCAAGTATTG	NA	False	NA	NA	False	NA	NA	NA	57643495	57742242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_57643622_57655311_57655456_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
22797	chr19	-	2750	5	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	96.3700549963525	73	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCATCTTAGAAATTT	1927	False	NA	NA	False	NA	NA	NA	8796655	8786437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8788281_8788998_8789203_8793217_8793401_8795799_8796049_8796384
22798	chr11	+	2080	11	NIC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	19	-4	combination_of_known_splicesites	FALSE	canonical	1	4	junction_7	227.353667223557	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCAAGCCGGCGTGTCT	NA	False	NA	NA	False	NA	NA	NA	76836583	76878201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857819_76857888_76859428_76859547_76862734_76862805_76877301
22799	chr1	+	2110	2	Genic_Genomic	ENSMUSG00000101523.3	novel	2633	1	NA	NA	18	20	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	156351599	156354234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_156353442_156353966
22800	chr11	+	1496	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-1	-33	multi-exon	FALSE	non_canonical	0	0	junction_2	980	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGACAGTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653618	120655212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120655023_120655087
22801	chr9	-	3162	7	NNC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	-103	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	80.2255501002573	1	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTCTGATGTGATTC	-10	True	NA	NA	False	NA	NA	NA	7836909	7818233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836749
22802	chr8	-	2140	6	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2097.05151105069	1	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43759994	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758464_43758596_43758716_43758980_43759877
22804	chr17	-	1869	12	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	2	116	junction_11	690.794117227915	3	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCATAGCTCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	45906467	45896135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45906407
22805	chr1	-	6739	12	FSM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	40	1906	-6	-1906	multi-exon	FALSE	canonical	3	17	junction_1	5.70486235990445	30	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTACCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	58625442	58563870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58569419_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
22807	chr3	-	2205	14	NNC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	-11	-141	intron_retention	FALSE	canonical	1	1	junction_12	62.892601233697	117	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCTCGGCTGCAGATTC	NA	False	NA	NA	False	NA	NA	NA	96634803	96618979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631402_96633149_96633316_96634664
22809	chrX	+	1531	6	FSM	ENSMUSG00000001964.15	ENSMUST00000088313.5	1338	6	-22	-171	-2	171	multi-exon	FALSE	canonical	3	12	junction_5	106.854293315711	28	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGTTATTGAAAATAAG	NA	False	NA	NA	False	NA	NA	NA	73298413	73305325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73304387
22810	chr1	+	2458	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	63	324	0	-324	multi-exon	FALSE	canonical	3	576	junction_4	38.3577313661217	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTCCTCACTGTTCACCC	NA	False	NA	NA	False	NA	NA	NA	71596371	71618466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
22812	chr16	-	3597	16	NNC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	1230	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.525774099245	3	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTAAAGCTCTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	20194162	20150061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20150912_20150960_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740
22813	chr14	+	2041	11	NNC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	32	-6	intron_retention	FALSE	non_canonical	0	0	junction_8	499.18233141809	44	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTAATTTGGAGTTATG	NA	False	NA	NA	False	NA	NA	NA	73790237	73833576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828565_73830092_73830193_73831116_73831206_73832813
22814	chr12	-	2334	18	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-20	2	combination_of_known_splicesites	FALSE	canonical	3	11	junction_14	59.8794059138462	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	84664164	84649304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84660678_84660819_84661850_84661979_84662099_84662219_84664056
22815	chr7	+	2680	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAGGAAGACTCATGCTT	270	False	NA	NA	False	NA	NA	NA	3339098	3347862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3339156_3341727_3341816_3345237_3347118_3347207
22816	chr11	+	2391	4	NNC	ENSMUSG00000020492.12	novel	3037	4	NA	NA	279	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	94.3374557403132	3	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAGCCTCCATGTTATA	NA	False	NA	NA	False	NA	NA	NA	87006973	87015459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87007017_87008493_87008671_87012759_87014267_87014795
22818	chr7	+	2840	3	FSM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	305	-115	305	115	multi-exon	FALSE	canonical	3	677	junction_2	22.5	767	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGCAAAGGTATATCACAA	8307	False	NA	NA	False	NA	NA	NA	144415427	144419095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_144415570_144415968_144416073_144416501
22819	chr2	-	2447	15	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	1	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	374.309404920909	3	9	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTAATTTTGTTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	94268480	94242082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94242197_94243433_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
22820	chr11	+	1816	12	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	787.485526562523	70	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471242	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69471879_69471982_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
22821	chrX	+	4001	6	NNC	ENSMUSG00000072966.12	novel	3814	7	NA	NA	14	1	intron_retention	FALSE	canonical	0	0	junction_1	63.2348005452694	171	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCCTTCTTCACTTTAAA	NA	False	NA	NA	False	NA	NA	NA	134739818	134745480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134740012_134740493_134740622_134741141_134741219_134741367_134741678_134741913_134742053_134742326
22822	SIRV1	-	974	3	FSM	SIRV1A	SIRV106	973	3	-1	0	-1	0	multi-exon	FALSE	canonical	2	497	junction_2	204	4191	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10787	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_7552_7809_10553
22824	chr11	+	2715	11	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	26	-11	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	423.425329898909	334	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGCTGCAGACCCTGGT	NA	False	NA	NA	False	NA	NA	NA	101207064	101214352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210419_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
22826	chr6	+	1158	5	Antisense	novelGene_ENSMUSG00000106676.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGACCCCAAAAAAGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	32769157	33037134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_32769867_32945174_32945254_32985417_32985500_33026271_33026360_33036934
22828	chr9	-	1740	13	ISM	ENSMUSG00000042790.17	ENSMUST00000161187.8	2847	14	1485	1054	1451	89	3prime_fragment	FALSE	canonical	3	5	junction_11	15.2260741274083	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACACCCCTTTTCCCCTC	NA	False	NA	NA	False	NA	NA	NA	45816220	45776042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811508_45811555_45816103
22830	chr1	+	3140	24	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	-17	134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	594.562494231106	1	145	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATTGACCAGACTTTAGT	NA	False	NA	NA	False	NA	NA	NA	85992396	86067007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992528_85998304_85998349_85999335_85999410_85999550_85999713_86003520_86003727_86005077_86005222_86006289_86006517_86010852_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046228_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
22831	chr2	-	3481	9	ISM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	39	17	-6	-5	intron_retention	FALSE	canonical	3	177	junction_5	19.9421037004625	27	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTTGAAGTGTAC	8173	False	NA	NA	False	NA	NA	NA	156848956	156837201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087
22832	chr15	+	1223	4	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2556	-5073	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTACCGTTCCCGACAACT	NA	False	NA	NA	False	NA	NA	NA	98829649	98832270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98830446_98830575_98830722_98830853_98831079_98832214
22834	chr10	+	2484	16	NIC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	11612	-56	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	313.207449890111	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAACAAAGATGCTACTT	NA	False	NA	NA	False	NA	NA	NA	21183568	21244726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21183679_21184997_21185214_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
22835	chr2	+	2202	11	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-12	intron_retention	FALSE	canonical	3	1876	junction_8	240.71859088986	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACAAAACCAGATAGTATG	NA	False	NA	NA	False	NA	NA	NA	130116349	130121215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119545_130119768_130119891_130120075_130120211_130120816
22838	chr15	-	1708	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	61	84	-3	-84	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601889	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
22839	chr18	-	4343	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-30	94	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	89.9568553678062	1	137	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCCATGGACTTGAAA	NA	False	NA	NA	False	NA	NA	NA	62681796	62637131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662722_62663759_62663898_62666579_62666746_62666971_62667136_62669182_62669321_62673951_62674118_62681682
22840	chr13	+	2798	24	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	24	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	551.055797078103	1	75	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACTGTGTTGGAAGTAG	NA	False	NA	NA	False	NA	NA	NA	49835629	49887735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840939_49860226_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134_49887179_49887438
22841	chr14	-	3930	3	NIC	ENSMUSG00000021910.16	novel	747	7	NA	NA	-243	-21	intron_retention	FALSE	canonical	3	993	junction_1	11.5	3	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACAGTGGATGTCTGT	9760	False	NA	NA	False	NA	NA	NA	30909652	30905290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30907008_30907268_30908845_30909015
22842	chr2	+	2574	17	NNC	ENSMUSG00000027012.16	novel	2097	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	190.346723113375	1186	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCAAATTTTCACTTTT	NA	False	NA	NA	False	NA	NA	NA	71042331	71093638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71091704_71091811_71092991
22843	chr9	-	4171	6	NIC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	12	0	intron_retention	FALSE	canonical	3	88	junction_5	51.3326406879677	2	105	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	27066677	27008679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_27009698_27010007_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
22845	chr11	+	3383	15	Antisense	novelGene_ENSMUSG00000038909.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	119	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGCGGGCTCCGTGGCGG	NA	False	NA	NA	False	NA	NA	NA	95165084	95200938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_95166716_95167270_95167378_95168296_95168409_95171229_95171310_95172325_95172468_95172664_95172754_95174853_95175046_95177154_95177268_95180596_95180696_95182344_95182434_95185386_95185474_95190804_95191045_95193958_95194137_95196876_95197023_95200860
22846	chr5	-	3656	4	FSM	ENSMUSG00000046798.15	ENSMUST00000060947.14	3597	4	-59	0	-20	0	multi-exon	FALSE	canonical	3	56	junction_3	5.18544972870135	130	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	5564932	5555108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564764
22847	chr6	+	2076	9	NNC	ENSMUSG00000013736.17	novel	2283	9	NA	NA	17	-9	intron_retention	FALSE	canonical	3	21	junction_8	305.446292333038	6	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTCATTCTTTGTCGT	NA	False	NA	NA	False	NA	NA	NA	106746147	106759426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756252_106758607
22848	chr1	+	2699	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	248	929	14	-929	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	146	107	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTGATAAAGTTTTATG	905	False	NA	NA	False	NA	NA	NA	58432304	58445583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
22849	chr4	+	2296	6	Antisense	novelGene_ENSMUSG00000096065.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	2.4	1	67	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGAACTTCCTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	147696405	147787064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147697438_147697773_147698506_147699736_147699877_147702873_147702992_147725345_147725461_147786905
22850	chr4	+	3665	19	NNC	ENSMUSG00000045751.17	novel	4478	24	NA	NA	-192	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	66.6852057555997	18	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGAAACAAAACAGCTCT	8503	False	NA	NA	False	NA	NA	NA	24504969	24602937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591151_24591246_24596137_24596302_24598782_24598883_24600154_24600323_24602573
22851	chr19	+	3555	5	FSM	ENSMUSG00000025209.6	ENSMUST00000026227.3	3488	5	-67	0	-67	0	multi-exon	FALSE	canonical	3	97	junction_1	30.3593066455741	177	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	2486	False	NA	NA	False	NA	NA	NA	44994929	45001201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44996815_44997718_44997960_44998570_44998679_44998856_44998999_45000022
22852	chr13	-	784	2	Intergenic	novelGene_1479	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCTTGAGCTTCATGT	NA	False	NA	NA	False	NA	NA	NA	77190950	77189759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_77190116_77190522
22853	chr1	-	1456	6	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	20	-554	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1791.90535464349	6	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7316	False	NA	NA	False	NA	NA	NA	160040425	160030490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034221_160035957_160036166_160040216
22854	chr4	-	3662	6	NNC	ENSMUSG00000008489.19	novel	4127	7	NA	NA	480	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	35.1112517578055	154	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGAACTGTGTATCTTT	NA	False	NA	NA	False	NA	NA	NA	91259713	91139007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_91141805_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91259576
22855	chr7	+	1846	1	ISM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	12877	2	10528	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	-2	True	NA	NA	False	NA	NA	NA	44478388	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44478400_44480200
22856	chr1	+	2193	9	FSM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	214	13	0	-13	multi-exon	FALSE	canonical	3	35	junction_5	130.869925880624	110	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGATCTCAAGGAATCA	8185	False	NA	NA	False	NA	NA	NA	134333732	134339461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
22857	chrX	-	3356	18	NNC	ENSMUSG00000025059.17	novel	4340	19	NA	NA	44	-663	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	65.2188755660798	1	74	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATCTGCATTTCTCATT	NA	False	NA	NA	False	NA	NA	NA	84820186	84746205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_84748003_84754656_84754738_84755947_84756092_84756208_84756327_84756879_84756965_84757947_84758045_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
22858	chr13	-	2956	14	NNC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	-6	82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	103.753291813466	1	73	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGCTATTGTGTGCGT	NA	False	NA	NA	False	NA	NA	NA	68730246	68709399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715084_68718162_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
22859	chr2	-	2017	12	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.519664175452	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCGTTTCTAAGGGGTT	NA	False	NA	NA	False	NA	NA	NA	73044762	72923143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72923900_72924029_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
22860	chr4	+	2898	5	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078496.10	novel	2800	4	NA	NA	-7586	2578	multi-exon	TRUE	non_canonical	0	0	junction_3	189.180304207388	1	153	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147409277	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147409335_147413438_147413566_147596801_147597357_147597524_147598223_147599060
22861	chr6	-	1873	7	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	-2	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	963.91902610587	3	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGAATGCGTTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	83294537	83282693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83290360_83290529_83294410
22862	chrUn_JH584304v1	-	1119	4	Intergenic	novelGene_4598	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTACCCCAGATTCCATC	NA	False	NA	NA	False	NA	NA	NA	52710	50846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_51543_51644_51729_52287_52399_52482
22863	chr7	+	2043	2	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	10277	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	-4	True	NA	NA	False	NA	NA	NA	44478137	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44478660_44478713
22864	chr13	-	1865	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3329.98549668963	2	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTATTTTTGGTGGTCTT	5148	False	NA	NA	False	NA	NA	NA	58549933	58539769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541195_58541552_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544008_58544074_58544640_58544726_58545579_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
22865	chr16	+	3292	21	NIC	ENSMUSG00000005899.15	novel	4623	20	NA	NA	1	148	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	95.4658446775599	5	12	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGATTGTCTGGGCTGAA	NA	False	NA	NA	False	NA	NA	NA	17437224	17461359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17437299_17438449_17438495_17438575_17438627_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
22866	chr11	-	3471	15	NNC	ENSMUSG00000020451.18	novel	3693	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_14	62.3787395100057	3	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	9853	False	NA	NA	False	NA	NA	NA	3321337	3294255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3321151
22867	chr11	-	1265	2	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTTTGAGCCCGACTCG	5995	False	NA	NA	False	NA	NA	NA	120655196	120653739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120654045_120654236
22868	chr11	+	2271	10	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGCCTTGTCTTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	106545052	106586712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106545991_106562552_106562625_106570374_106570440_106571859_106571910_106573703_106573788_106575045_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579
22869	chr2	+	4355	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	45	3	15	-3	multi-exon	FALSE	canonical	3	42	junction_5	6.30352084156148	259	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTCTGTTTCTGGTAT	642	False	NA	NA	False	NA	NA	NA	144369682	144383912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
22871	chr3	-	3188	6	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	-2	516	combination_of_known_junctions	FALSE	canonical	3	5	junction_4	80.3308160048185	2	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGACTAAATCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	35986987	35947138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975261_35975337_35986933
22872	chr16	-	1918	11	FSM	ENSMUSG00000022962.16	ENSMUST00000120450.2	1865	11	-57	4	-40	-4	multi-exon	FALSE	canonical	3	1247	junction_10	242.657701299588	1092	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGTGTTTTGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	91443880	91430296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
22873	chr13	+	3938	12	Antisense	novelGene_ENSMUSG00000034152.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	281	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCTGCCACCTCCCGGAG	NA	False	NA	NA	False	NA	NA	NA	74320110	74356786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_74320366_74321416_74321542_74322104_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338312_74340729_74341409_74347574_74347794_74355024
22874	chr8	-	540	3	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1046.5	151	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8402	False	NA	NA	False	NA	NA	NA	85751908	85744559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85744828_85750857_85750955_85751733
22875	chr1	+	2027	16	Antisense	novelGene_ENSMUSG00000026356.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	35	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTGGATTTGGGGAGTG	NA	False	NA	NA	False	NA	NA	NA	128291443	128344957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_128292065_128294435_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300026_128301675_128301824_128303916_128304058_128306510_128306617_128314854_128314913_128316854_128316937_128319007_128319111_128333102_128333191_128341392_128341492_128343092_128343148_128344887
22877	chr7	-	3984	4	FSM	ENSMUSG00000040167.17	ENSMUST00000121033.8	2231	4	-37	-1716	-13	0	multi-exon	FALSE	canonical	2	3	junction_1	34.7658836600865	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTTGTTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	131012263	130990380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_130993851_130995483_130995667_130998397_130998581_131012115
22878	chr2	-	3503	15	FSM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	200	1913	200	-1913	multi-exon	FALSE	canonical	3	8	junction_4	6.77630927178938	137	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCTGTTTTAGTAACAT	8479	False	NA	NA	False	NA	NA	NA	126774955	126734223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
22880	chr11	-	1164	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	4	-166	4	166	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCGCTGCACCCAAAAAAAA	4465	False	NA	NA	False	NA	NA	NA	20286009	20284845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286000
22881	chr16	+	4827	4	Fusion	ENSMUSG00000087240.2_ENSMUSG00000087190.3	novel	429	2	NA	NA	-965	2954	intron_retention	FALSE	non_canonical	0	0	junction_1	0	18	111	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACTACTGGCGCCA	NA	False	NA	NA	False	NA	NA	NA	91720360	91728477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_91722516_91723346_91725898_91727241_91727291_91728405
22882	chr3	-	2400	11	NIC	ENSMUSG00000068921.15	novel	1375	12	NA	NA	4	0	intron_retention	FALSE	canonical	3	805	junction_3	47.3814309619285	15	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88857254	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88833669_88834317_88834378_88835515_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
22883	chr9	+	1105	10	ISM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	183	916	-1	498	5prime_fragment	FALSE	canonical	3	1479	junction_8	286.723422460835	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAAGGTCTCTGAGTATG	1178	False	NA	NA	False	NA	NA	NA	108437667	108441867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833
22884	chr3	-	4426	6	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	-18	0	intron_retention	FALSE	canonical	3	1645	junction_5	244.994204013075	2	108	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	NA	False	NA	NA	NA	54642485	54636102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54639639_54640120_54641153_54641523_54641588_54641716_54641754_54642428
22886	chr5	-	2087	7	FSM	ENSMUSG00000023452.20	ENSMUST00000142957.6	2084	7	3	-6	3	6	multi-exon	FALSE	canonical	3	16	junction_6	252.221904062452	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAACAAAAACTACCGTA	NA	False	NA	NA	False	NA	NA	NA	32942980	32893659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32942892
22887	chr10	-	2800	2	Antisense	novelGene_ENSMUSG00000038587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCAATGCGCACTGGAG	NA	False	NA	NA	False	NA	NA	NA	4305789	4284557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_4284708_4303139
22888	chr3	-	2146	10	NIC	ENSMUSG00000040774.16	novel	2020	9	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	99.9041515962817	998	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	NA	False	NA	NA	NA	106455088	106410298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106427324_106427410_106438452_106438595_106440670_106440819_106446505_106446920_106454995
22889	chr8	+	2152	8	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	558.575995596967	46	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	8853	False	NA	NA	False	NA	NA	NA	120637578	120684296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120683655
22890	chr18	+	3694	18	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	437.660594351092	1	160	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251938	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315599_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
22891	chr14	+	2263	15	NNC	ENSMUSG00000036023.7	novel	2173	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	22	junction_7	206.898131298216	1480	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	51045381	51058757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054650_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
22893	chr6	-	2583	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	277.07869805334	1	76	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3045	False	NA	NA	False	NA	NA	NA	71885737	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861613_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879845_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
22894	chr5	+	2652	20	Antisense	novelGene_ENSMUSG00000025745.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCTTCTAGTGGGGGG	NA	False	NA	NA	False	NA	NA	NA	30324427	30359964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30324958_30325041_30325189_30325685_30325799_30326333_30326531_30327146_30327214_30327616_30327762_30328607_30328691_30331560_30331734_30333796_30333932_30334817_30334929_30337237_30337294_30339054_30339182_30340025_30340102_30345948_30346046_30347715_30347837_30349156_30349301_30350235_30350342_30352317_30352415_30352977_30353019_30359878
22895	chr11	-	2730	19	NNC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	358	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	72.881287713414	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGCTTCAGGATGAGC	NA	False	NA	NA	False	NA	NA	NA	117670116	117656810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_117657162_117658426_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988
22896	chr18	+	1960	20	FSM	ENSMUSG00000024474.8	ENSMUST00000007042.6	1996	20	32	4	-4	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	1654	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	NA	False	NA	NA	NA	36877740	36890688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
22897	chr19	-	5089	12	NNC	ENSMUSG00000025154.16	novel	5103	12	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	101.102435575701	1	238	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGGTTCTGACTGGTC	4533	False	NA	NA	False	NA	NA	NA	41790480	41755026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790418
22900	chr12	+	1682	8	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	83	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2230.16454961676	1	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758322	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758330_24759357_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
22902	chr14	+	6586	12	FSM	ENSMUSG00000014547.11	ENSMUST00000014691.10	6646	12	60	0	24	0	multi-exon	FALSE	canonical	3	23	junction_9	5.80111132128866	51	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGTTGTATCCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	63075186	63198958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63075507_63123258_63123327_63137703_63137778_63162578_63162634_63167676_63167828_63171738_63171852_63181469_63181597_63186091_63186198_63189363_63189466_63190460_63190592_63192309_63192419_63193728
22904	chr8	-	2125	8	NIC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	10	-10	intron_retention	FALSE	canonical	3	742	junction_2	39.9101030633925	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCACAAACTATGGTCTT	NA	False	NA	NA	False	NA	NA	NA	31658781	31649500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656661_31656737_31656788_31658692
22905	chr2	+	2778	18	NNC	ENSMUSG00000027469.17	novel	3483	18	NA	NA	3	-639	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	316.880054370943	2	76	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTTGTGGTTTCAGTCA	2697	False	NA	NA	False	NA	NA	NA	152689886	152735935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152689954_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722150_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731247_152732419_152732558_152733362_152733475_152734032_152734221_152735503
22906	SIRV7	-	2449	5	FSM	SIRV7A	SIRV705	2462	5	0	13	0	-13	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTTCCAAGCGTAATTA	NA	False	NA	NA	False	NA	NA	NA	147925	1018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
22907	chr2	-	2244	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	349	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	192.268458151617	32	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	165703576	165669105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165703460
22909	chr4	+	2918	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	12	1699	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	231.929816970565	72	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACACCAACTTCTTAACTA	6636	False	NA	NA	False	NA	NA	NA	135975295	136003908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
22910	chr2	-	2702	14	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	75	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACCAGAGCGAGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	152122359	152068809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068910_152076829_152076925_152092318_152092531_152096128_152096240_152099295_152099399_152099859_152099908_152100593_152100656_152102678_152102763_152105103_152105212_152114545_152114652_152116019_152116112_152117315_152117465_152118862_152118927_152120991
22911	chr4	+	2353	8	NNC	ENSMUSG00000028581.18	novel	397	2	NA	NA	-2193	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	165.980574226047	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTCATGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	130638242	130663450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130638308_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
22912	chr1	-	2638	21	Antisense	novelGene_ENSMUSG00000025995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	72	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGAGCACCGGCCGGATTA	NA	False	NA	NA	False	NA	NA	NA	45862773	45834660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_45834765_45838175_45838300_45840313_45840385_45841196_45841298_45843052_45843159_45844533_45844608_45845832_45845951_45846828_45846918_45851198_45851359_45852202_45852268_45852352_45852466_45853700_45853873_45855633_45855792_45856420_45856602_45857327_45857423_45857979_45858078_45858648_45858817_45859288_45859349_45861605_45861750_45862004_45862132_45862463
22913	chr18	+	3186	3	NIC	ENSMUSG00000117869.2	novel	1190	4	NA	NA	0	-119	intron_retention	FALSE	canonical	3	167	junction_1	17.5	529	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCTTTGAAATTTATAT	NA	False	NA	NA	False	NA	NA	NA	35686462	35691250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35686523_35687479_35689745_35690389
22914	chr15	+	1934	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-22	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	676.680064522535	2	63	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGTTTGTGGTCTCA	NA	False	NA	NA	False	NA	NA	NA	78959425	78978598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961125_78962278_78962360_78963030_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
22916	chr19	-	2654	2	Antisense	novelGene_ENSMUSG00000065087.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	215	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAGAAAGACA	9576	False	NA	NA	False	NA	NA	NA	8703807	8700940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8701554_8701766
22917	chr11	+	4213	21	NNC	ENSMUSG00000070327.15	novel	16716	67	NA	NA	-12066	1	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	21.5870331449229	3	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTAAGAGTCCTGTTTGG	1235	False	NA	NA	False	NA	NA	NA	119356816	119378242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119356923_119357049_119357241_119358052_119358176_119358795_119358907_119359643_119359887_119360957_119361040_119361680_119361716_119362540_119362636_119364189_119364350_119364991_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
22920	chrX	-	3666	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	443	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	538.247216542457	7	68	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGCCCTGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	72829785	72822571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824529_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72827286
22921	chr2	-	3620	13	NIC	ENSMUSG00000027086.17	novel	2865	14	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	79.5893976747043	16	100	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTATGGCCCACCATATA	7081	False	NA	NA	False	NA	NA	NA	69543834	69517158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
22922	chr7	+	667	1	ISM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	12568	1487	10219	281	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTTGGGCTTCAGCCTC	4	True	NA	NA	False	NA	NA	NA	44478079	44478746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44478100_44478700
22924	chr7	-	3612	21	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-10	-15	intron_retention	FALSE	canonical	0	0	junction_12	52.4988333203701	1	72	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTGTGTATTGATTTCT	NA	False	NA	NA	False	NA	NA	NA	140697696	140681152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140683148_140683904_140684058_140684154_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687630_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140690288_140690426_140690543_140690670_140691067_140691143_140697626
22926	chr3	+	3160	5	NNC	ENSMUSG00000027952.17	novel	1156	5	NA	NA	37	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	260.03076741032	3	50	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTTGGATCACAGCTCA	177	False	NA	NA	False	NA	NA	NA	89366461	89376301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89368015_89368409_89369253_89371602_89371756_89374853_89374984_89375820
22927	chr11	-	2881	12	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9034	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	682.47185635068	1	94	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	390	False	NA	NA	False	NA	NA	NA	106615254	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106575022_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106590417_106590712_106605727_106605755_106605844_106606008_106615168
22928	chr11	+	3193	4	Antisense	novelGene_ENSMUSG00000025140.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	95	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCCCTTCTTGCATT	139	False	NA	NA	False	NA	NA	NA	120530227	120534537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120531174_120531966_120532352_120532479_120533791_120533986
22929	chr8	-	3179	9	NNC	ENSMUSG00000014837.16	novel	3552	8	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.2018517460196	42	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	NA	False	NA	NA	False	NA	NA	NA	106016126	106007040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106007708_106008023_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015424_106015798_106016035
22931	chr3	-	2291	11	NIC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	-8	-7	intron_retention	FALSE	canonical	3	466	junction_6	158.621593738053	10	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAATTGTTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	127347006	127330369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340468_127340569_127340840_127341010_127341196_127346831
22932	chr8	+	2597	4	NNC	ENSMUSG00000052446.18	novel	2713	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	198.595624881875	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72704924	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719637_72719765_72721742_72722573_72722617
22933	chr3	-	4559	9	NIC	ENSMUSG00000033439.13	novel	1616	11	NA	NA	2	-2	intron_retention	FALSE	canonical	3	111	junction_3	9.13783344124853	4	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATCAATCTGAGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	116388534	116374745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_116375260_116376142_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383942_116385841_116385909_116386112_116386160_116388287
22934	chr17	+	2646	6	NNC	ENSMUSG00000068039.14	novel	3419	10	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_3	1763.46992035589	61	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135328	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13138813_13139178_13139345_13139626_13139702_13143196
22935	chr9	+	2922	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	-143	3	-143	-3	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824502	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
22936	chr2	-	1828	16	NIC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-2	-22	combination_of_known_junctions	FALSE	canonical	2	3	junction_15	95.1360195836583	297	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGAATCCATCCACCCCCC	NA	False	NA	NA	False	NA	NA	NA	164699633	164681459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699464
22937	chr2	+	2561	16	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-33	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	531.510275849238	1	78	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTGTATTTCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	84867544	84877396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873124_84874710_84874793_84875753_84875925_84876027_84876109_84876596_84876784_84876989
22938	chr7	+	976	6	NNC	ENSMUSG00000066232.5	novel	3867	17	NA	NA	0	3518	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	376.071482566812	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACTGTGGCTGCCTT	7239	False	NA	NA	False	NA	NA	NA	109617521	109636949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636485_109636896
22939	chr6	-	1143	7	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1149	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCTGCTCTCCTATCA	9953	False	NA	NA	False	NA	NA	NA	67261298	67248259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67248330_67248867_67249012_67249122_67249213_67249847_67249921_67254742_67254921_67258629_67258804_67260884
22940	chr4	+	1672	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	2	0	2	0	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	3982	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	NA	False	NA	NA	NA	138920211	139019129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
22942	chr18	+	1965	14	NNC	ENSMUSG00000038299.17	novel	2330	15	NA	NA	-10	-526	intron_retention	FALSE	canonical	0	0	junction_12	248.721916436763	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGACTAGGAAGATCGTC	9040	False	NA	NA	False	NA	NA	NA	32970353	32985966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972509_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983593_32985037_32985149_32985537
22943	chr2	-	3709	6	FSM	ENSMUSG00000027300.11	ENSMUST00000028761.5	3731	6	25	-3	14	3	multi-exon	TRUE	canonical	3	59	junction_5	36.0477461153953	141	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATTTATTTCTCATTAG	NA	False	NA	NA	False	NA	NA	NA	130471933	130431918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130471835
22945	chr11	+	1800	11	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	386.310820454204	24	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4823997	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119_4843987_4844066
22947	chr12	-	5179	20	FSM	ENSMUSG00000020593.17	ENSMUST00000221230.2	4114	20	7	-1072	0	-14	multi-exon	FALSE	canonical	3	46	junction_15	24.5031514734934	206	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACTTCTGAAAATCAGGC	7246	False	NA	NA	False	NA	NA	NA	16639767	16585968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
22948	chr4	-	3776	9	NIC	ENSMUSG00000028454.17	novel	4239	10	NA	NA	2	-2	intron_retention	FALSE	canonical	3	131	junction_4	25.6195116073668	38	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAGCTAAGATCTGTGA	6353	False	NA	NA	False	NA	NA	NA	43025078	43017636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562
22949	chr12	-	2758	11	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_3	592.004763494349	1	90	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860074	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832129_108832171_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
22950	chr11	-	3538	11	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	39	-10	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	38.2758409443868	1	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCATAAATTATTGTGTG	1430	False	NA	NA	False	NA	NA	NA	61157914	61135688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61137148_61138754_61139309_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
22951	chr15	-	4166	17	Antisense	novelGene_ENSMUSG00000065465.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCCACGGAAGGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	82089093	82031454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_82031690_82053936_82054320_82059283_82059518_82061354_82061472_82061606_82061786_82062914_82063109_82063564_82063749_82066181_82066457_82069462_82069635_82076406_82076573_82078242_82078363_82079114_82079225_82080359_82080494_82081818_82081988_82083835_82084020_82087383_82087496_82087895
22952	chr1	+	3967	10	NNC	ENSMUSG00000026039.10	novel	4939	9	NA	NA	59	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	97.4236009634799	2	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAAAGATTTATTTATC	5198	False	NA	NA	False	NA	NA	NA	58035188	58065044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517_58054661_58055559_58057143_58058747_58058902_58063942
22953	chr6	+	1448	5	NNC	ENSMUSG00000012396.13	novel	1995	5	NA	NA	294	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2174.94797351569	12	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684820	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684866_122688493_122688763_122689587_122689675_122690100_122690138_122690582
22954	chr12	+	1994	15	NNC	ENSMUSG00000021040.16	novel	2701	4	NA	NA	5973	25033	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	154	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCAAAGCCCCGCCTCCA	NA	False	NA	30	True	NA	NA	NA	87496688	87524009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87497153_87497667_87497742_87499353_87499468_87500625_87500727_87502361_87502504_87503623_87503731_87505654_87505729_87506190_87506260_87507175_87507282_87508434_87508537_87508626_87508723_87511314_87511484_87515381_87515534_87519017_87519025_87523792
22955	chr17	-	2399	5	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	4468	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	770.555440899615	1	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTAAGTGTATCTGGTG	9294	False	NA	NA	False	NA	NA	NA	25175142	25161456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25162972_25163111_25163653_25164553_25164603_25167611_25167755_25174991
22956	chr9	+	2892	23	Intergenic	novelGene_1159	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	76	10	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAAAATGGCGTCTCCA	3033	False	NA	NA	False	NA	NA	NA	107617698	107648153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_107618275_107619577_107619720_107619798_107619898_107621035_107621113_107621382_107621560_107622250_107622424_107623210_107623377_107627163_107627263_107627660_107627751_107628920_107628966_107629060_107629153_107629309_107629398_107630175_107630273_107631219_107631382_107631621_107631688_107633051_107633113_107634107_107634194_107636976_107637046_107637517_107637593_107642695_107642853_107644746_107644908_107646759_107646832_107648091
22957	chr6	+	2690	5	NNC	ENSMUSG00000030245.11	novel	2818	5	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_3	259.236378619977	5	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	142332970	142349584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_142333096_142338055_142338148_142339653_142339729_142341913_142341996_142347268
22959	chr8	-	1561	5	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-11	-135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1757.75174228331	3	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTATGTTTTGATTT	NA	False	NA	NA	False	NA	NA	NA	43759998	43748238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43748307_43748363_43749574_43753664_43753743_43757512_43757597_43759877
22961	chr2	+	1765	3	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	26030	14	5564	-14	3prime_fragment	FALSE	canonical	3	2909	junction_1	207	3	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAACACATTGTAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	162922636	162926594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162922743_162924469_162924620_162925085
22962	chrX	-	1038	9	ISM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	5108	18	-82	-18	3prime_fragment	FALSE	canonical	3	1120	junction_8	118.906935773318	16	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTTCTGTTCCAGAACT	NA	False	NA	NA	False	NA	NA	NA	72825395	72822586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282
22963	chr9	-	4150	3	FSM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	-3	5	-3	-5	multi-exon	FALSE	canonical	3	41	junction_1	39.5	151	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGCTGGGATCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	57169898	57160404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57161613_57163668_57166424_57169711
22964	chr7	-	2643	16	NNC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	6	-3	intron_retention	FALSE	non_canonical	0	0	junction_14	60.7342480721453	2	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAAAGCACTGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	30364413	30353143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358409_30358487_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362555_30362647_30362711_30364255
22965	chr2	+	2456	10	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	41	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	617.633316442893	2	72	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8610	False	NA	NA	False	NA	NA	NA	72306543	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72309957_72310063_72312034_72312273_72312772_72312857_72313698_72313906_72314222_72314350_72314942_72315093_72315519_72315657_72316063
22967	chr9	+	4436	9	Intergenic	novelGene_1068	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	211	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGAGCCCGCCTCCCGA	NA	False	NA	NA	False	NA	NA	NA	58125379	58157045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129147_58136635_58136691_58137110_58137367_58137771_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156825
22968	chr13	+	1432	1	Antisense	novelGene_ENSMUSG00000061724.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCCGGATCCGGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	13406067	13407499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_13406100_13407500
22969	chr10	+	2172	11	NNC	ENSMUSG00000004207.15	novel	2654	14	NA	NA	52	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	320.833929003776	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7042	False	NA	NA	False	NA	NA	NA	60113501	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130458_60135281_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
22971	chr7	+	2839	9	FSM	ENSMUSG00000030965.20	ENSMUST00000129552.2	2827	9	-9	-3	3	0	multi-exon	FALSE	canonical	3	30	junction_5	67.4532245337464	355	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	132460968	132486840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478364_132478447_132480257_132480343_132482495_132482611_132484763
22975	chr2	+	1642	14	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	67	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1732.48515964852	1	29	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTGCCCCCTTTATAC	NA	False	NA	NA	False	NA	NA	NA	121244430	121268444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244574_121252929_121253009_121255005_121255124_121257075_121257137_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066_121268203_121268271
22976	chr15	-	1623	14	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	465.837961009147	6	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTTCCTTCGTCCTGTG	2752	False	NA	NA	False	NA	NA	NA	77855006	77843205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851527_77852758_77852790_77854882
22977	chr13	+	1866	12	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-8	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	743.818948467417	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAAACCACTCTTGGTA	NA	False	NA	NA	False	NA	NA	NA	3588119	3615810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606377_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3615203_3615385
22978	chr13	+	1952	10	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	623.586480582631	1	56	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588144	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601055_3606363_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
22979	chr7	+	3615	3	NNC	ENSMUSG00000086502.2	novel	1142	2	NA	NA	-6500	-8033	intron_retention	FALSE	non_canonical	0	0	junction_1	0	149	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCGAGATGGCTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	127041307	127048324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127044310_127047534_127047648_127047824
22980	chr13	+	4227	4	ISM	ENSMUSG00000033991.10	ENSMUST00000224386.2	6976	45	81695	393	4	-183	3prime_fragment	FALSE	canonical	3	252	junction_3	18.3847763108502	22	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGACTAATACTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	76328547	76338042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_76331065_76333245_76333370_76335718_76335814_76336551
22981	chr7	+	3390	3	NNC	ENSMUSG00000012848.16	novel	445	2	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	9430.5	8	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATACCTTCCTGTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	12656244	12660608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12658466_12658855
22982	chr2	-	2031	10	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	0	-436	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	549.048762142195	3	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTCTACTGCCTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	154916417	154901665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906272_154906733_154906847_154907456_154907554_154909255_154909319_154910747_154910939_154916284
22984	chr7	-	3092	23	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-16	-1	intron_retention	FALSE	canonical	3	82	junction_9	28.5868619768933	74	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCATGATGTAGATCCA	NA	False	NA	NA	False	NA	NA	NA	140697702	140681131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
22986	chr9	-	2422	17	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCCACGCGGTTTTCG	9139	False	NA	NA	False	NA	NA	NA	21311482	21279303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299093_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252
22987	chr2	+	2926	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	1	123	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACTAGAGTGGATGC	651	False	NA	NA	False	NA	NA	NA	26279357	26287124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285751_26285942
22988	chr9	+	1095	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	-1	649	-1	-253	5prime_fragment	FALSE	canonical	3	16882	junction_3	1479.39201511128	90	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCAGTTTGGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	64080655	64085299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178
22989	chr11	-	5038	17	FSM	ENSMUSG00000020176.18	ENSMUST00000093321.12	5061	17	8	15	8	-15	multi-exon	TRUE	canonical	3	35	junction_14	7.38135319572231	76	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAATAAAGCGTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	11987393	11880522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11883610_11884198_11884293_11886717_11886806_11887000_11887068_11887806_11887924_11888409_11888485_11893881_11893981_11894815_11894927_11895494_11895633_11895963_11896033_11896686_11896803_11901502_11901660_11904743_11904909_11917531_11917686_11920422_11920643_11937595_11937675_11987191
22990	chr18	+	3081	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	38	-4	intron_retention	FALSE	non_canonical	0	0	junction_12	320.193759134106	2	107	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATCAGTGGGTTCTTTTT	9099	False	NA	NA	False	NA	NA	NA	32970412	32999449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972509_32974095_32974197_32976814_32976948_32977430_32977521_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983593_32985040_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994166_32994548_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
22991	chrX	-	2292	11	NNC	ENSMUSG00000031402.13	novel	2525	12	NA	NA	8071	11258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTTATCAAAATTCTAGAAA	NA	False	NA	NA	False	NA	NA	NA	74153383	74142080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74142158_74142366_74142552_74144036_74144169_74144604_74144725_74146025_74146172_74147945_74148066_74149258_74149377_74149881_74149986_74150775_74150855_74151782_74151915_74152304
22992	chr15	-	4280	12	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	224	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	195.503461109478	17	40	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTTGGTAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	88614750	88571249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598217_88601108_88601266_88613526
22993	chr5	+	1893	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	387	308	387	-308	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	2	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGCATGTTGTCTACCC	NA	False	NA	NA	False	NA	NA	NA	129864448	129874904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
22994	chr8	-	2699	17	Intergenic	novelGene_1744	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	106	10	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCTCACCATCCAATCAG	NA	False	NA	NA	False	NA	NA	NA	111782198	111760517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760551_111763551_111763704_111766761_111766943_111767222_111767374_111768108_111768314_111768888_111769015_111769288_111769439_111769862_111769971_111770270_111770423_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111776982_111781138_111781247_111781642
22995	chr1	+	2024	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	-15	0	-15	0	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	1909	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	131080902	131101215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
22996	chr17	-	4010	24	Antisense	novelGene_ENSMUSG00000036636.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	113	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCATTCCCGTGACCCGCG	NA	False	NA	NA	False	NA	NA	NA	25381073	25352406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_25352587_25363401_25363471_25364540_25364613_25364739_25364809_25365292_25365426_25365745_25365852_25366681_25366759_25368006_25368074_25368182_25368267_25369158_25369257_25369518_25369581_25370089_25370205_25370675_25370731_25371319_25371390_25371993_25372123_25372698_25372798_25374339_25374563_25376111_25376216_25376451_25376534_25376834_25376973_25378438_25378500_25378581_25378756_25379096_25379182_25379415
22997	chr12	-	2977	21	Antisense	novelGene_ENSMUSG00000093037.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	121	26	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGGGAACTGGCGCGAGC	NA	False	NA	NA	False	NA	NA	NA	17480094	17398460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_17398619_17400514_17400562_17402640_17402740_17405236_17405314_17406919_17406958_17408100_17408238_17409088_17409157_17411134_17411194_17412593_17412678_17418347_17418392_17419467_17419617_17423562_17423628_17429246_17429301_17452072_17452199_17454969_17455049_17455230_17455330_17456804_17456896_17466026_17466200_17466714_17466961_17474648_17474753_17479114
22998	chr18	-	2428	14	NIC	ENSMUSG00000044252.19	novel	2674	15	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	126.569764657456	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGAATGCTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	12996434	12888385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_12889153_12889244_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996199
22999	chr3	-	1636	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	37	1897	-5	-150	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	104	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCCTCACCCTGTCCCA	NA	False	NA	NA	False	NA	NA	NA	108352477	108334077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
23000	chr12	+	3110	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	-1148	-374	-1148	374	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	1866	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTCATGGTTTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	59059030	59075630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
23001	chr2	+	3943	14	ISM	ENSMUSG00000027075.17	ENSMUST00000028469.14	2539	15	-40	19	-27	-11	intron_retention	FALSE	canonical	3	43	junction_1	15.474353663458	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGGAAATGAAATCTGGC	NA	False	NA	NA	False	NA	NA	NA	84669711	84693911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719
23002	chr2	+	2381	9	FSM	ENSMUSG00000000827.19	ENSMUST00000108799.10	985	9	-30	-1366	2	497	multi-exon	FALSE	canonical	3	48	junction_5	401.298965080898	2323	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACATCCATTTGTTTGGT	NA	False	NA	NA	False	NA	NA	NA	181138993	181158546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872
23004	chr14	-	4382	15	NNC	ENSMUSG00000021831.10	novel	4418	16	NA	NA	31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	176.639737711466	328	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATATCTTTGGTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	45555998	45520548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45532003_45536498_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
23005	chr1	+	2008	5	NIC	ENSMUSG00000053332.14	novel	1614	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	3576	junction_1	954.001310271637	223	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160865118_160865564_160865843_160866026
23006	chr4	-	4798	5	FSM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	64	5	27	-5	multi-exon	TRUE	canonical	3	44	junction_4	9.33742469849155	66	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAACTGGAAATCTATTCA	-4	True	NA	NA	False	NA	NA	NA	26346827	26324510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416_26340999_26346596
23007	chr2	-	3412	13	NIC	ENSMUSG00000009207.16	novel	3195	13	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_12	69.9761864255739	2	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTATTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	74409242	74350677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74408895
23008	chrX	-	2783	16	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-120	-56527	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_15	131.654429811111	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATTCGACTAATAAATGAA	NA	False	NA	NA	False	NA	NA	NA	59224569	59157845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941_59224048_59224496
23010	chr9	+	4967	15	ISM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	21028	15	-1567	-15	3prime_fragment	FALSE	canonical	3	480	junction_2	66.6094312130843	316	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAGCAACTTAAACTGTA	NA	False	NA	NA	False	NA	NA	NA	103203441	103227612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
23011	chr18	+	2814	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	44	7	-7	-7	multi-exon	FALSE	canonical	3	1498	junction_1	106	1	100	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATATCTAAATGTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730814	46743271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
23013	chr4	-	1840	11	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	303.258981730138	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGCTGGTGGGTTT	3216	False	NA	-49	True	NA	NA	NA	129228439	129203308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216029_129216141_129216262_129216488_129216663_129222380_129222527_129228289
23016	chr1	+	1929	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	4	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	737.364936031602	5	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTATTATAAGGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	59724183	59750657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724274_59729644_59729722_59731495_59731549_59731770_59731888_59735157_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
23017	chr15	+	2387	19	NIC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	8	16	intron_retention	FALSE	canonical	1	369	junction_13	165.497277214557	12	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTTCACCGGACAGACT	NA	False	NA	NA	False	NA	NA	NA	89239973	89255782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
23018	chr11	-	3075	7	NNC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	8	-8	intron_retention	FALSE	canonical	3	23	junction_6	96.7608736353009	205	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTGACTCTGCGTCATT	NA	False	NA	NA	False	NA	NA	NA	61385084	61379645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384349_61384760_61384905
23019	chr19	+	3265	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	158	-302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3899.30163619077	1	137	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAACTTTTTCCTGTCCTG	1001	False	NA	NA	False	NA	NA	NA	8944562	8955541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947322_8947394_8949318_8954378_8954855_8954948_8955074_8955307
23020	chr4	+	2755	4	Antisense	novelGene_ENSMUSG00000083834.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGGAGGGGGTGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	58435869	58553808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_58437632_58486473_58487225_58504621_58504781_58553725
23021	chr17	-	2569	21	NIC	ENSMUSG00000040688.17	novel	5226	22	NA	NA	5	-199	intron_retention	FALSE	canonical	3	500	junction_13	40.7180549633698	113	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAACTTGGTTTCTCATG	NA	False	NA	NA	False	NA	NA	NA	24926600	24919630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24919760_24919849_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
23022	chr11	-	2712	7	FSM	ENSMUSG00000019303.15	ENSMUST00000126386.8	1030	7	26	-1708	2	1399	multi-exon	FALSE	canonical	3	369	junction_2	24.7571538482651	43	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCCCTGAAATGGAGTGT	NA	False	NA	NA	False	NA	NA	NA	100986200	100981249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
23023	chr2	-	3495	28	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	112.6874235147	1	137	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTGCCTGCAGTGCCTA	NA	False	NA	NA	False	NA	NA	NA	103591555	103551603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557064_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564125_103564726_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103582999_103587541_103587606_103588015_103588139_103591393
23024	chr17	+	2799	11	NNC	ENSMUSG00000024301.11	novel	819	3	NA	NA	1663	-463	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	145.435759014075	1	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTACTGCTCAGGCTAATA	NA	False	NA	NA	False	NA	NA	NA	27137809	27151094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27138408_27139770_27139906_27139993_27140094_27140552_27140835_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
23025	chr2	-	1383	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	45	170	-3	-170	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGAGGAGGAGGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	25114669	25112341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
23026	chr2	+	2261	13	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	6.10100173924104	10	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTCGGTGCTGTGCTGGC	2782	False	NA	NA	False	NA	NA	NA	30023842	30042024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038697_30038796_30038942_30039001_30039711_30040543_30041727
23028	chr2	+	2594	12	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	9	-435	intron_retention	FALSE	canonical	1	1	junction_5	300.937460898275	48	38	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	164675743	164681504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164675771_164675949_164676352_164676617_164677232_164677549_164677642_164678346_164678793_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
23029	chr3	-	1790	10	Antisense	novelGene_ENSMUSG00000028093.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2407	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGGAAACTCAGACCCGT	NA	False	NA	NA	False	NA	NA	NA	97083883	97066050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_97066680_97073156_97073287_97073388_97073521_97073855_97073931_97075300_97075387_97075753_97075888_97078955_97079059_97081116_97081212_97082940_97083108_97083644
23030	chr9	+	1039	3	Genic_Genomic	ENSMUSG00000090602.4	novel	852	1	NA	NA	-17	300	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATAAAGTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16941323	16942492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_16941604_16941659_16941981_16942054
23031	chr6	-	2188	15	NNC	ENSMUSG00000015112.16	novel	616	4	NA	NA	-25	170	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	178.774698593349	28	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGTTATTGTTTATG	-5	True	NA	NA	False	NA	NA	NA	6217143	6068096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6068700_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
23032	chr13	-	3686	2	NNC	ENSMUSG00000046351.12	novel	488	2	NA	NA	5495	-12	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	2	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATACTCCATTTTTGTC	9782	False	NA	NA	False	NA	NA	NA	23541885	23537284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_23538689_23539603
23033	chr13	-	3449	29	NNC	ENSMUSG00000021357.15	novel	4256	28	NA	NA	-11	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	32.1646751348527	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATAGTGGAGTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	31158062	30997925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_30998063_30998870_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
23034	SIRV6	+	1390	11	NNC	SIRV6A	novel	1528	10	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	9148.42914603376	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACTTAGTTCAATCTTC	NA	False	NA	NA	False	NA	NA	NA	1087	11838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205_11294_11444
23035	chr15	-	1639	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	154	10	154	-10	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	5433	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTAAAAGTTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	98851430	98847727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
23036	chr12	+	2151	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	913	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTGAGTCGTTCATGCG	NA	False	NA	NA	False	NA	NA	NA	86516889	86568394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565978_86567726
23037	chr1	+	2515	1	FSM	ENSMUSG00002076939.1	ENSMUST00020182663.1	176	1	-849	-1490	-849	1490	mono-exon	FALSE	NA	NA	NA	NA	NA	26	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATAACCCTTGGCTCTT	NA	False	NA	NA	False	NA	NA	NA	63216292	63218807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_63216300_63218800
23041	chr7	-	2843	12	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-30	0	intron_retention	FALSE	canonical	3	712	junction_6	45.3553463002602	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGCCTGGTTTTTGAGG	7957	False	NA	NA	False	NA	NA	NA	126641611	126626900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126627163_126627241_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
23042	chr2	-	3318	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	27	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	188.563576075079	1	132	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACCCATGTGACCTAGT	NA	False	NA	NA	False	NA	NA	NA	127673697	127643049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661281_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
23043	chr8	-	2832	18	NIC	ENSMUSG00000031660.14	novel	3625	17	NA	NA	38	441	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	127.418200912881	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTTTATGTAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	89088604	89057225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_89058071_89059106_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
23044	chr8	+	2419	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	110	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	270.187812607513	2	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5951	False	NA	NA	False	NA	NA	NA	107330884	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392882_107396800
23045	chr7	+	920	1	NIC	ENSMUSG00000025508.14	novel	964	5	NA	NA	-5	-33	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCTTTGCCAAAATCAT	2411	False	NA	NA	False	NA	NA	NA	141027576	141028496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_141027600_141028500
23046	chr2	-	3732	19	Antisense	novelGene_ENSMUSG00000027298.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	217	5	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATGCCGGGCCCGGCC	NA	False	NA	NA	False	NA	NA	NA	119648585	119630257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119630361_119632024_119632211_119632757_119632859_119633718_119633889_119635245_119635334_119636093_119636217_119638319_119638492_119639211_119639358_119639881_119640026_119640382_119640515_119640596_119640699_119640958_119641053_119641339_119641421_119642076_119642171_119642539_119642663_119643022_119643136_119643283_119643443_119643640_119643781_119647124
23047	chr18	+	2402	18	NIC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	0	-34	intron_retention	FALSE	non_canonical	0	0	junction_12	176.636255570613	22	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAGCATGTTCCATTAAA	NA	False	NA	NA	False	NA	NA	NA	36877730	36890653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
23048	chr9	-	2380	11	Fusion	ENSMUSG00000031938.16_ENSMUSG00000046111.19	novel	2756	9	NA	NA	1006	-3596	intron_retention	FALSE	non_canonical	0	0	junction_1	0	78	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACGAAATCTCGCGTGA	NA	False	NA	-37	True	NA	NA	NA	15228247	15217525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_15217578_15218166_15218287_15219023_15219116_15219818_15220210_15221152_15221331_15221651_15221706_15222822_15222983_15224062_15224133_15225285_15226427_15226677_15226734_15228181
23049	chr3	-	4043	16	NIC	ENSMUSG00000027889.18	novel	3650	18	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	199	junction_8	18.7089996169401	2	93	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGAGGCATGTGAAGGT	NA	False	NA	NA	False	NA	NA	NA	107993972	107981381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
23050	chr13	+	3491	12	FSM	ENSMUSG00000001542.8	ENSMUST00000001583.8	4382	12	883	8	50	-8	multi-exon	FALSE	canonical	3	343	junction_2	37.9194448472108	250	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAGTGAATAATTTT	6335	False	NA	NA	False	NA	NA	NA	75855758	75920475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
23051	chr18	-	2117	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	-23	-9	4	-6	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAATTTTGGCATTCTCC	NA	False	NA	NA	False	NA	NA	NA	38472052	38460593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
23052	chr17	+	2698	5	NNC	ENSMUSG00000116802.2	novel	2194	4	NA	NA	6	279	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	51.8766566000547	4	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAAGTATGCTGCTCTT	6230	False	NA	NA	False	NA	NA	NA	17455139	17486604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17455288_17458286_17458518_17482739_17482867_17483108_17483170_17484473
23053	chr15	-	2330	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	113	1974	113	1627	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	4785	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTCTAATTTCTTGTACC	268	False	NA	NA	False	NA	NA	NA	37007533	36999244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
23054	chrX	+	1979	10	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-61	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1543.26417731627	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473279	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473358_100474091_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100491505
23055	chr6	-	2161	9	NIC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	2	300	junction_8	490.098826131016	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	8956	False	NA	NA	False	NA	NA	NA	47790298	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47790150
23057	chr10	+	4766	31	Antisense	novelGene_ENSMUSG00000020198.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	210	15	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGGCCGCTGCAAATGGC	NA	False	NA	NA	False	NA	NA	NA	80542789	80578051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_80543817_80544290_80544372_80544580_80544705_80545036_80545120_80545232_80545322_80545599_80545791_80546253_80546302_80546522_80546667_80547945_80548041_80548428_80548501_80548597_80548765_80549390_80549465_80549806_80549997_80550082_80550157_80550941_80551016_80551705_80551847_80552307_80552453_80553531_80553764_80554841_80555225_80555501_80555649_80556955_80557003_80557424_80557478_80558749_80558794_80559362_80559441_80559524_80559664_80562886_80563020_80563718_80563821_80565804_80565893_80566707_80566789_80568684_80568785_80577731
23058	chr14	-	1782	10	NNC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1543.01809435475	9	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8748	False	NA	NA	False	NA	NA	NA	52341462	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335735_52335837_52336002_52341345
23059	chr11	+	2217	12	NNC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	218.160112556681	3	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAAGCCGGCGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	76836543	76878203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857653_76857819_76857888_76859428_76859547_76862734_76862805_76877301
23060	chr2	-	2785	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	-9	-1345	-9	-336	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	1492	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCTTCCATTATTTGGT	2812	False	NA	NA	False	NA	NA	NA	34689749	34667903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
23066	chr12	+	2184	10	NIC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	-30	-51	intron_retention	FALSE	canonical	3	37	junction_4	765.740422768531	20	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTTTCTAGCACTGTAA	4004	False	NA	NA	False	NA	NA	NA	100076443	100089613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081727_100081865_100082045_100082175_100082957_100083055_100085331_100086398_100087251_100087407_100089316
23067	chr11	+	5471	15	NNC	ENSMUSG00000018401.18	novel	5753	19	NA	NA	4055	-26	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	33.9546516304753	5	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAATCTCTATATTAG	NA	False	NA	NA	False	NA	NA	NA	87490532	87507102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87490701_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
23071	chr10	+	3816	19	FSM	ENSMUSG00000069601.15	ENSMUST00000182029.8	3825	19	3	6	3	-6	multi-exon	FALSE	canonical	3	13	junction_18	22.7009544586419	39	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTACATGAATGCAGATG	NA	False	NA	NA	False	NA	NA	NA	69761637	69851629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69837752_69838432_69840439_69840822_69851400
23072	chr9	+	2104	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	243	3442	13	1987	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTTTCTGTCATGTGTT	8608	False	NA	NA	False	NA	NA	NA	18203663	18225296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
23073	chr7	+	3028	10	ISM	ENSMUSG00000030539.14	ENSMUST00000205822.2	3760	14	17950	14	17855	-14	3prime_fragment	FALSE	canonical	3	56	junction_1	16.0762074023833	295	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTGGCCCACATTC	6917	False	NA	NA	False	NA	NA	NA	79866138	79876145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
23074	chr1	+	2983	14	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	-6	-586	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	410.003651304278	1	107	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTGTATCCATTTAAAT	NA	False	NA	NA	False	NA	NA	NA	93406774	93437396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423354_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434781_93435451_93437159_93437204
23075	chr10	-	1116	11	Antisense	novelGene_ENSMUSG00000025395.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCATGTCGATGTCAAAGA	NA	False	NA	NA	False	NA	NA	NA	127865861	127853922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127853946_127854010_127854090_127855997_127856134_127857539_127857599_127858729_127858842_127859451_127859542_127859647_127859787_127862384_127862455_127862919_127863013_127865059_127865154_127865640
23076	chr14	-	2406	8	NIC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-56	-72	combination_of_known_splicesites	FALSE	canonical	1	5	junction_6	224.382235827844	18	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTTGTTTGGGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	40688820	40628475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40656144_40656243_40688732
23077	chrX	+	1740	3	ISM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	10	0	-10	intron_retention	FALSE	canonical	3	11783	junction_2	411.5	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCAGTTTTGTTCG	NA	False	NA	NA	False	NA	NA	NA	36059303	36062450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_36059495_36060495_36060983_36061388
23078	chr4	-	1874	14	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	10	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	530.617927152282	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	8840	False	NA	NA	False	NA	NA	NA	129436474	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411236_129411643_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
23079	chr5	-	2354	12	NNC	ENSMUSG00000037936.16	novel	2521	13	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	189.39752239035	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	125418168	125354150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380259_125381277_125381417_125417820
23081	chr5	-	4044	13	NNC	ENSMUSG00000038593.19	novel	5717	14	NA	NA	-20	-1648	intron_retention	FALSE	non_canonical	0	0	junction_4	11.1952370824978	81	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGGTAAGTTCATTTG	NA	False	NA	NA	False	NA	NA	NA	122402498	122377558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122379899_122380668_122380789_122383563_122383727_122384547_122384689_122385594_122385681_122385982_122386109_122386911_122387047_122389653_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
23082	chr5	-	2813	17	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	270.165971846474	1	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8108	False	NA	NA	False	NA	NA	NA	100564093	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536926_100536966_100538617_100538693_100540253_100540433_100564006
23083	chr14	-	2731	15	NNC	ENSMUSG00000022031.7	novel	2851	15	NA	NA	48	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	127.257031400298	1	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTCTTTAACATAAAAGAG	3517	False	NA	NA	False	NA	NA	NA	65830451	65767914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815499_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
23084	chr11	-	3669	11	FSM	ENSMUSG00000006930.16	ENSMUST00000103124.11	2120	11	-19	-1530	-19	-2	multi-exon	FALSE	canonical	3	486	junction_1	44.9070150421958	281	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCCTGTCTCAGTTGTG	2029	False	NA	NA	False	NA	NA	NA	100246932	100238154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
23085	chr19	-	5295	23	NIC	ENSMUSG00000025006.19	novel	2688	24	NA	NA	-2	2703	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	20.7997139204739	64	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGTGGCACCTCTGTGTT	9886	False	NA	NA	False	NA	NA	NA	40502197	40280493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40288686_40288747_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
23086	chr4	+	2578	7	NNC	ENSMUSG00000028676.18	novel	3055	6	NA	NA	5	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	535.172246415426	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGAAGGAAATAATGAT	4711	False	NA	NA	False	NA	NA	NA	135583447	135593113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583567_135585612_135585719_135589081_135589189_135590350_135590514_135590836_135590888_135591039_135592209_135592250
23087	chr18	-	1958	14	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	0	161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	246.873059875531	3	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTTTGACATTTCTTTT	5401	False	NA	NA	False	NA	NA	NA	10024680	9995432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007806_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533
23088	chr5	+	2024	15	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	376	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1769.32703827397	1	67	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCACACTTGAAATGAC	NA	False	NA	NA	False	NA	NA	NA	129864437	129875207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864462_129864595_129864640_129865297_129865322_129866116_129866252_129866880_129867055_129867647_129867752_129868541_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
23089	chr11	-	3423	3	Fusion	ENSMUSG00000042549.11_ENSMUSG00000018931.4	novel	4179	3	NA	NA	61	-813	multi-exon	FALSE	canonical	3	4	junction_2	107	216	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTGCTCTCTGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	60822632	60793884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_60796948_60797707_60797827_60822391
23090	chr2	-	4641	25	NNC	ENSMUSG00000034032.16	novel	4744	25	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	165.478215879177	1	174	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTGACTGATCTGGACT	506	False	NA	NA	False	NA	NA	NA	119617976	119594451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600421_119600845_119600911_119601370_119601573_119601676_119601836_119602219_119602520_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604434_119604598_119604701_119605433_119605535_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
23091	chr2	-	1814	13	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	17212	5736	intron_retention	FALSE	non_canonical	0	0	junction_1	0	30	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGAGCATCTGCATCACGT	NA	False	NA	-68	True	NA	NA	NA	164681504	164675701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164675769_164675947_164676349_164676614_164676666_164676753_164676843_164677073_164677229_164677546_164677640_164678344_164678430_164678903_164678996_164679099_164679176_164679274_164679345_164680554_164680649_164680762_164680868_164681068
23092	chr3	-	1919	13	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	393.93322897274	189	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATGTACCTGGCCCTGA	NA	False	NA	NA	False	NA	NA	NA	157630700	157599893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157626896_157627024_157630502
23093	chr9	+	1445	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1481	2	1463	-2	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	11	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCTGCTTTGTTCCACA	NA	False	NA	NA	False	NA	NA	NA	64082137	64085946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
23094	chr17	+	1890	13	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-54	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	360.263589843141	6	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGGTTCTCTAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	21165694	21186165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180798_21182900_21182979_21185500_21185593_21185716
23095	chr2	+	2534	8	NNC	ENSMUSG00000026864.14	novel	2613	8	NA	NA	-3	-75	intron_retention	FALSE	non_canonical	0	0	junction_6	1136.14793158681	1	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGTCTAATTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	34662103	34666468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665086_34665248_34665562
23096	chr7	+	2378	3	Antisense	novelGene_ENSMUSG00000030760.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTGAGTTGTGTTGTGTG	4672	False	NA	NA	False	NA	NA	NA	97847770	97860601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_97847826_97857003_97857086_97858360
23097	chr17	-	2275	5	ISM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	273	5	153	-1	intron_retention	FALSE	canonical	3	568	junction_4	35.5598087733891	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGCAGCCTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	34250321	34247247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341
23098	chr4	+	2273	12	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	59	-374	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	474.614745899022	2	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTCTGCACGGAGTCTC	914	False	NA	NA	False	NA	NA	NA	129083753	129113026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100035_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
23099	chr16	+	2941	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	59	3	-33	-3	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	217	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCTTTATAGAGAAATCT	NA	False	NA	NA	False	NA	NA	NA	13489780	13521473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
23100	chr2	-	2016	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-28	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	441.743012269452	1015	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACATCCTTGGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	152185980	152179345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180608_152181634_152181928_152184956_152185248_152185810
23102	chr15	+	1973	12	NIC	ENSMUSG00000022471.15	novel	2114	13	NA	NA	26	-1	combination_of_known_junctions	FALSE	canonical	2	29	junction_2	180.669096178759	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGCACTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	81900595	81924284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81900677_81901310_81901400_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
23104	chr3	+	1853	6	NNC	ENSMUSG00000038374.11	novel	2608	6	NA	NA	0	-884	intron_retention	FALSE	canonical	0	0	junction_5	1731.84255635436	150	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATTGGCCCTTCTCTTC	8642	False	NA	-70	True	NA	NA	NA	96537255	96540223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004_96539844_96539980
23105	chr2	+	926	2	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	44082	13427	3738	4990	internal_fragment	FALSE	canonical	3	663	junction_1	0	1	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAATAAGTTACATGTTT	NA	False	NA	NA	False	NA	NA	NA	90551640	90553245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_90551695_90552373
23106	chr2	+	2675	4	NNC	ENSMUSG00000062175.14	novel	2900	3	NA	NA	294	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	82.8908251188809	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	156682313	156697490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156682438_156686075_156686302_156695048_156695149_156695265
23107	chr6	-	3678	20	NNC	ENSMUSG00000063884.7	novel	2666	25	NA	NA	0	-1850	intron_retention	FALSE	canonical	3	11	junction_3	218.400455591947	2	125	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTACTAGCTCTTCTAACC	3048	False	NA	NA	False	NA	NA	NA	71885734	71859476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71861610_71862292_71862384_71862481_71862561_71865548_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
23108	chr1	+	4194	25	FSM	ENSMUSG00000026104.15	ENSMUST00000070968.14	5151	25	12	945	12	-87	multi-exon	FALSE	canonical	3	19	junction_12	6.79038842777054	60	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTAGTGTTATGAGTTGG	3275	False	NA	NA	False	NA	NA	NA	52158625	52200079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_52158783_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
23109	chr18	-	2744	9	NNC	ENSMUSG00000037013.18	novel	2911	10	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	390.670717324706	1	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTTCTCATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	14815823	14758690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14760369_14766599_14766734_14769549_14769676_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
23110	chr17	+	3727	20	NIC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	0	-143	intron_retention	FALSE	canonical	3	146	junction_7	23.4688453827858	2	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGACTTGGCTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	45817766	45831626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825820_45826170_45826210_45826325_45826438_45826870_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
23111	chr8	-	3092	13	NNC	ENSMUSG00000031545.7	novel	5518	13	NA	NA	-99	-2468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.040203526607	283	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGGACTTTGCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	23698461	23663748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_23664667_23665402_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
23112	chr13	-	1848	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	848	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2069.46458501687	1	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTATTTTTGGTGGTCTT	6850	False	NA	NA	False	NA	NA	NA	58548231	58539769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541599_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146
23113	chr6	+	2619	9	NNC	ENSMUSG00000038301.16	novel	2464	7	NA	NA	-12	-7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	159.814540952943	12	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAGCAAAACAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	51500949	51567643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51501015_51521520_51521630_51538997_51539045_51546773_51546889_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
23114	chr16	+	2794	8	ISM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	133	1	7	0	intron_retention	FALSE	canonical	3	222	junction_1	26.2235289270486	36	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGTGGTGAACCAGAG	402	False	NA	NA	False	NA	NA	NA	18066879	18071365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989
23115	chr5	+	3456	6	NNC	ENSMUSG00000032840.8	novel	5649	5	NA	NA	52	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	73.3255753472143	309	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGCTGTTTTACAGTGC	1691	False	NA	NA	False	NA	NA	NA	118383343	118404154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164_118401221_118403357
23117	chr14	+	2332	14	ISM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	26615	15	26588	-15	3prime_fragment	FALSE	canonical	3	387	junction_5	26.0831624031049	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGGAAATGTCTTTCT	353	False	NA	NA	False	NA	NA	NA	25869194	25887213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
23119	chr6	-	2859	18	NNC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	62.4216048127957	1	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGTATCGGAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	146479280	146451135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468097_146468159_146468194_146476199_146476275_146477722_146477959_146478798
23120	chr9	+	2439	7	NIC	ENSMUSG00000032387.16	novel	1803	9	NA	NA	13	0	intron_retention	FALSE	canonical	3	1453	junction_4	118.273341600436	245	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGATTTTTGCTTCTA	NA	False	NA	NA	False	NA	NA	NA	65537853	65567810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558987_65566416_65566487_65566719
23121	chr2	+	3389	3	NNC	ENSMUSG00000007476.19	novel	4194	3	NA	NA	5359	-964	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGTATTAAAAAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	30133092	30152833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30133343_30145179_30147345_30151859
23123	chr5	+	2697	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	0	0	0	0	multi-exon	FALSE	canonical	3	1125	junction_2	41.7215471908701	554	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTATTCCTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	28276360	28283660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
23124	chr4	-	3519	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	-30	507	-30	-507	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	4691	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACCCTGAGATTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	148172518	148162024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
23125	chr4	-	2213	6	NIC	ENSMUSG00000028964.15	novel	908	7	NA	NA	-11	-1	intron_retention	FALSE	canonical	3	5627	junction_5	153.902046770015	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGCCAGCTACCTTTGT	NA	False	NA	NA	False	NA	NA	NA	150994336	150981602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_150981929_150985464_150985552_150988271_150989767_150991496_150991599_150992774_150992881_150994239
23126	chr12	-	2791	10	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-8	-5	intron_retention	FALSE	canonical	0	0	junction_9	623.285520051744	1	85	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTCTGTCACTGTCT	NA	False	NA	NA	False	NA	NA	NA	108860071	108825964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854473_108859994
23128	chr15	+	1216	12	ISM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	-20	9369	-20	7	5prime_fragment	FALSE	canonical	3	1573	junction_6	130.8457548805	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGTGAGCTTAGACTT	NA	False	NA	NA	False	NA	NA	NA	84076421	84092099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033
23130	chr3	-	4758	7	NNC	ENSMUSG00000062127.12	novel	4834	6	NA	NA	7	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.0776772152815	71	11	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTTAAATCATAACTGTC	1479	False	NA	NA	False	NA	NA	NA	104960260	104909245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104912114_104912169_104913445_104915263_104915372_104918508_104918740_104939968_104940077_104946180_104946304_104960215
23132	chr2	-	4757	14	Fusion	ENSMUSG00000006471.19_ENSMUSG00000115018.3	novel	2336	14	NA	NA	0	-32	intron_retention	FALSE	canonical	3	15	junction_13	48.1394670101744	169	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTTCTCAATAAACAGT	NA	False	NA	NA	False	NA	NA	NA	25145380	25134864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25145040_25145228
23133	chr17	-	3317	5	NIC	ENSMUSG00000024436.17	novel	1079	7	NA	NA	982	-3	intron_retention	FALSE	canonical	3	1264	junction_3	61.7919897721379	4	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACCCGTTCTTGACTCCC	5464	False	NA	NA	False	NA	NA	NA	36226113	36221280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36221849_36222310_36222371_36223229_36225295_36225383_36225482_36225587
23134	chr11	-	992	5	FSM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	-26	-2	-26	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0271658914602	211	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	NA	False	NA	NA	NA	11772947	11764100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772791
23138	chrX	-	1073	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	10	306	combination_of_known_junctions	FALSE	canonical	3	293	junction_4	76.0110088696878	25	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCATGCTTTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	72161298	72151708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
23139	chr4	+	3415	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-8	28	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	20.6774165590278	91	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTTGTATTTGTGTAAC	46	False	NA	NA	False	NA	NA	NA	12089430	12096271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_12089506_12089662_12089796_12092522_12092573_12093114
23140	chr2	-	2342	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-2	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.89006308701	1	84	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTGGAAAGCAAATAAAAAC	NA	False	NA	NA	False	NA	NA	NA	154916369	154901275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902352_154902458_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
23141	chr4	+	2704	16	NNC	ENSMUSG00000006215.13	novel	867	7	NA	NA	-3379	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	44.5622660505001	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAATGTTGCCTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	141168585	141194531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141168722_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
23142	chr7	-	4032	9	NIC	ENSMUSG00000054662.9	novel	3088	23	NA	NA	-57	-13	intron_retention	FALSE	canonical	3	132	junction_6	15.623999967998	17	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTATTGATTTCTGA	NA	False	NA	NA	False	NA	NA	NA	140688644	140681150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140683148_140683904_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687771_140687958
23143	chr16	+	2675	9	NNC	ENSMUSG00000022721.20	novel	2235	12	NA	NA	-9	1	intron_retention	FALSE	canonical	2	12	junction_4	114.581780292505	8	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCTGTGGTGAACCAG	379	False	NA	NA	False	NA	NA	NA	18066856	18071363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683_18068837_18069019_18069135_18069222_18069525_18069989_18070113_18070265_18070885_18070963
23144	chr4	-	2484	15	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	902.096404753609	2	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	1	True	NA	NA	False	NA	NA	NA	43000434	42979962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980369_42983012_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986058_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
23145	chr8	+	2333	6	NIC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	-7	-3	combination_of_known_splicesites	FALSE	canonical	1	7	junction_5	100.096753194097	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGTGTATTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	47070469	47092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47090953
23147	chr19	-	2627	7	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	20675	2	2183	-2	3prime_fragment	FALSE	canonical	3	973	junction_6	180.523005613012	3	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGTGTTTTGTCAAT	9225	False	NA	-36	True	NA	NA	NA	60758406	60749556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303
23148	chr10	+	1932	7	NIC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-55	-13	intron_retention	FALSE	canonical	3	4641	junction_2	447.57792617599	76	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGTCTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	126899347	126903153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
23149	chr1	-	4512	1	Antisense	novelGene_ENSMUSG00000050229.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAATGATCACTTCCGGC	9678	False	NA	NA	False	NA	NA	NA	172208641	172204129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_172204100_172208600
23150	chrX	-	4071	13	NIC	ENSMUSG00000031143.5	novel	2353	17	NA	NA	136	0	intron_retention	FALSE	canonical	3	194	junction_9	22.9799127258762	2	90	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGCTTAGGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	7471620	7460047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463972_7465396_7466993_7470398_7470577_7471482
23154	chr17	-	3267	3	Intergenic	novelGene_141	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	153.5	3	124	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGCCAGCTATAGC	NA	False	NA	NA	False	NA	NA	NA	35219750	35215248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35218446_35219142_35219182_35219719
23155	chr17	-	1089	1	Intergenic	novelGene_140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACCCTGTCTCGAAAAA	5505	False	NA	NA	False	NA	NA	NA	35214098	35213009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35213000_35214100
23156	chr14	+	2445	7	NIC	ENSMUSG00000040997.15	novel	2406	7	NA	NA	-11	1	intron_retention	FALSE	canonical	1	3	junction_1	140.486555307696	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATGACACTGTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	54496752	54506622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_54496884_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
23157	chrX	+	2350	9	ISM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	13	36	13	-4	intron_retention	FALSE	canonical	3	647	junction_4	28.1954672775608	1662	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTGTTGGGCTTCGTGT	NA	False	NA	NA	False	NA	NA	NA	73340715	73348291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963
23158	chrX	+	2113	10	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	254.032709082808	6	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6223	False	NA	NA	False	NA	NA	NA	73348878	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350765_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
23159	chr15	+	2016	4	NIC	ENSMUSG00000000346.10	novel	542	4	NA	NA	-44	-5	combination_of_known_junctions	FALSE	canonical	3	516	junction_1	340.746565972751	1207	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513941	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_100514204_100514793_100514913_100515805_100516052_100517248
23160	chr17	-	714	1	Intergenic	novelGene_117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTCTGCCCTTGGCT	9656	False	NA	NA	False	NA	NA	NA	29482703	29481989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_29482000_29482700
23162	chr11	+	1023	1	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	3425	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCATGTTTTTAGATATC	NA	False	NA	NA	False	NA	NA	NA	71937172	71938195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_71937200_71938200
23163	chr11	+	1859	13	Genic_Genomic	ENSMUSG00000087338.3	novel	811	5	NA	NA	18099	19341	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGCCAAAGGCCATCGCG	NA	False	NA	NA	False	NA	NA	NA	88814852	88846228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_88815549_88819988_88820153_88821031_88821181_88824281_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832182_88834621_88834696_88835194_88835229_88838012_88838063_88843233_88843381_88846122
23164	chr15	-	2600	15	ISM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	11919	0	93	0	3prime_fragment	FALSE	canonical	3	663	junction_6	25.5020007218321	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	99537605	99518376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494
23165	chr16	-	2113	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	119	563	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	852.671459170501	1	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCAACTTGTTTTTACA	NA	False	NA	NA	False	NA	NA	NA	22084531	22064634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066011_22067185_22067246_22067799_22067864_22069597_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
23166	chr6	+	3144	12	NNC	ENSMUSG00000001520.13	novel	1893	6	NA	NA	8296	8470	intron_retention	FALSE	non_canonical	0	0	junction_1	0	436	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAACCGGAAGTCTACGT	NA	False	NA	NA	False	NA	NA	NA	128385551	128401860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_128387381_128387455_128387629_128388526_128388645_128389660_128389753_128389918_128389978_128390067_128390166_128390489_128390634_128391104_128391250_128392859_128393028_128393219_128393262_128394579_128394676_128401680
23167	chr7	-	3489	1	NIC	ENSMUSG00000056383.11	novel	2671	4	NA	NA	16833	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	4	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTTCATGATAAATTTC	NA	False	NA	NA	False	NA	NA	NA	41025851	41022362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_41022400_41025900
23170	chr19	-	3160	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	513.071464320517	1	139	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGAGTACTGGCTAACT	3915	False	NA	NA	False	NA	NA	NA	5345434	5323966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334608_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
23171	chr5	+	1769	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	-45	31	-45	-8	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	3702	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAAAGGCAGTACTTGG	5228	False	NA	NA	False	NA	NA	NA	100666129	100695638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
23173	chrX	-	4476	6	NNC	ENSMUSG00000056537.12	novel	7429	5	NA	NA	18	-3027	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	85.0858390097906	3	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACTCATCTCTGAAGTA	2391	False	NA	NA	False	NA	NA	NA	103024872	103003795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_103007650_103008856_103008941_103010096_103010287_103022109_103022202_103022878_103022941_103024678
23174	chr13	+	2250	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	3	2050	3	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	1	95	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588065	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
23175	chr19	+	3146	20	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-21264	-606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAAGCTCGGGTCAGCCG	NA	False	NA	NA	False	NA	NA	NA	5323959	5345450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5324558_5324821_5325001_5325085_5325181_5329290_5329401_5329499_5329639_5329867_5329978_5333670_5333781_5333887_5333969_5334589_5334755_5336218_5336445_5336604_5336685_5336837_5336977_5337096_5337318_5337570_5337657_5337938_5338035_5338331_5338438_5341338_5341426_5343102_5343348_5344325_5344409_5345260
23176	chr1	-	1849	17	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	347.833602234962	3443	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	78465493	78401721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420378_78431384_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
23177	chr15	+	2713	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	-5	50	-1	-50	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	220	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGGGTGACTCATTGGG	NA	False	NA	NA	False	NA	NA	NA	59186924	59202991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
23178	chr5	-	1972	7	NNC	ENSMUSG00000038593.19	novel	2201	13	NA	NA	-5	510	intron_retention	FALSE	non_canonical	0	0	junction_1	10.1159939369957	2	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTCAGGTGAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	122402483	122385992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122387047_122389653_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
23179	chr8	+	1315	1	FSM	ENSMUSG00000040236.5	ENSMUST00000207787.2	4411	1	50	3046	50	-3046	mono-exon	FALSE	NA	NA	NA	NA	NA	8	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	3726559	3727874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_3726600_3727900
23180	chr13	-	2690	14	NNC	ENSMUSG00000025453.19	novel	3122	15	NA	NA	61	-83	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	60.4023002030758	2	31	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGTAGCTTCGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	119545472	119472066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505119_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
23181	chr14	+	2715	14	FSM	ENSMUSG00000021866.16	ENSMUST00000133547.2	2733	14	2	16	2	-16	multi-exon	FALSE	canonical	3	393	junction_4	23.1322413898	727	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGGAAATGTCTTTC	4	True	NA	NA	False	NA	NA	NA	25842608	25887212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
23183	chr13	-	2353	12	NNC	ENSMUSG00000025453.19	novel	3122	15	NA	NA	204	-91	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	82.3401531844961	1	58	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAAAAGTGATGTAGCTT	NA	False	NA	NA	False	NA	NA	NA	119545329	119472074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494124_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545262
23185	chr10	-	2316	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	7	1	combination_of_known_junctions	FALSE	canonical	3	26	junction_10	613.474041830622	2	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCTTCTGTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	127358306	127352990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356532_127358186
23186	chr1	-	1810	5	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	-2	intron_retention	FALSE	canonical	3	5452	junction_4	640.231793962156	88	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAAATTGAAATGTGTCG	NA	False	NA	NA	False	NA	NA	NA	16174626	16171531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
23187	chr7	+	2812	11	NNC	ENSMUSG00000049643.16	novel	1989	11	NA	NA	-12	0	intron_retention	FALSE	canonical	2	11	junction_4	129.933983237643	470	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	418	False	NA	NA	False	NA	NA	NA	27252679	27281524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27252779_27255838_27255960_27259976_27260029_27260463_27260597_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
23188	chr16	-	2739	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-3	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	391.35030164004	4	67	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8113	False	NA	NA	False	NA	NA	NA	4867724	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832604_4833160_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867672
23189	chr8	-	1793	8	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-242	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	454.096816072682	15	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTGTCTCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	85573498	85568720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569507_85570717_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
23190	chr9	+	2135	11	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	74	169	-7	-86	intron_retention	FALSE	canonical	3	5755	junction_3	207.90432895926	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTACAACCGGATCCGCAG	NA	False	NA	NA	False	NA	NA	NA	108765774	108778522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612
23191	chr4	-	1729	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	305.162062349697	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2495	False	NA	NA	False	NA	NA	NA	129229160	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203687_129211436_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
23192	chr16	-	1809	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	28	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1194.85699981211	24	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAAAGTCGCTGT	982	False	NA	NA	False	NA	NA	NA	11021167	11010845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011602_11012323_11012480_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
23194	chr2	-	1222	12	Antisense	novelGene_ENSMUSG00000076441.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGAGATAGCGGTCCTC	NA	False	NA	NA	False	NA	NA	NA	31410676	31371081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_31371174_31376498_31376556_31378587_31378664_31382319_31382394_31383153_31383186_31388156_31388248_31390842_31390930_31391499_31391563_31400119_31400251_31404687_31404846_31408735_31408802_31410381
23195	chrX	-	1901	3	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	964	-9	intron_retention	FALSE	canonical	3	15566	junction_2	719.5	9	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACTACTTTTGGTTTGC	NA	False	NA	NA	False	NA	NA	NA	101231978	101228555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101229267_101230001_101230174_101230960
23196	chr17	+	1245	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	115	2	115	-2	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3151	False	NA	NA	False	NA	NA	NA	35817029	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
23197	chr19	-	1917	9	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_3	278.485188115993	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8390	False	NA	NA	False	NA	NA	NA	43512971	43488190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488997_43491346_43491490_43492960_43493059_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
23198	chr6	+	4377	8	FSM	ENSMUSG00000030232.19	ENSMUST00000032359.15	5932	8	-146	1701	-146	-638	multi-exon	FALSE	canonical	3	55	junction_1	98.0522559554811	143	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTAACCCTCAAGTATT	NA	False	NA	NA	False	NA	NA	NA	140568242	140599506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_140568785_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481
23200	chr6	+	2271	17	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	-9	-13	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	181.494049058778	539	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTAAACATATCCAGTG	NA	False	NA	NA	False	NA	NA	NA	40302432	40373683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
23201	chr11	+	2133	10	NIC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	-1	-163	intron_retention	FALSE	canonical	0	0	junction_1	532.313492522017	4	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTCCCCCAAACCCTC	NA	False	NA	NA	False	NA	NA	NA	4823997	4844037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4824104_4832900_4833172_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
23202	chr10	-	2474	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	591.079178318203	3	118	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	-6	True	NA	NA	False	NA	NA	NA	128401848	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399449_128399575_128401608
23203	chr5	+	5129	42	NNC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	3	-152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	54.3141324622598	1	222	21	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGGTCCTTTTCCTTCA	2029	False	NA	NA	False	NA	NA	NA	33021080	33148846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33021166_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032713_33034413_33034498_33035971_33036022_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075496_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091355_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
23204	chr6	-	2405	14	Intergenic	novelGene_4184	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAGAAGAAGACATCAC	NA	False	NA	NA	False	NA	NA	NA	71852209	71821620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_71821693_71823265_71823459_71828754_71828868_71829751_71829840_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840258_71845544_71845786_71848408_71848540_71849774_71849910_71851301_71852030_71852113
23206	chr2	-	2714	17	NNC	ENSMUSG00000027071.15	novel	1764	13	NA	NA	-9647	-5189	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	100	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCCGGGGAAGCTTTTCC	9573	False	NA	NA	False	NA	NA	NA	84877453	84867586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84867672_84868140_84868313_84868695_84868881_84870215_84870322_84870606_84870798_84870900_84871133_84871261_84871368_84871458_84871580_84871775_84871999_84872584_84872658_84873034_84873173_84873296_84873344_84874664_84874791_84875755_84875923_84876025_84876115_84876594_84876782_84876987
23207	chr3	-	1773	8	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	33	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	270.514702154306	75	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACTTAAAAGCATAAAATC	NA	False	NA	NA	False	NA	NA	NA	131065717	131027103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038755_131038936_131042064_131042223_131043451_131043581_131065524
23208	chr5	-	3657	6	ISM	ENSMUSG00000015806.13	ENSMUST00000118097.8	1232	7	-22	18	-17	-18	intron_retention	FALSE	canonical	3	819	junction_4	96.2330504556517	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACACACTTCATGTCTTG	NA	False	NA	NA	False	NA	NA	NA	45607535	45591412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917
23209	chr1	+	2847	16	ISM	ENSMUSG00000039354.17	ENSMUST00000152225.2	2994	17	2047	0	24	0	3prime_fragment	FALSE	canonical	3	73	junction_5	11.4348395509319	21	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	NA	False	NA	NA	NA	72624820	72672293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
23210	chr11	+	3429	10	NIC	ENSMUSG00000061981.15	novel	2621	11	NA	NA	20	0	intron_retention	FALSE	canonical	3	354	junction_7	22.3407947734881	6	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	NA	False	NA	NA	NA	77928829	77951260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_77928939_77940303_77940386_77945610_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
23211	chr9	-	1242	2	Genic_Genomic	ENSMUSG00000058922.8	novel	960	1	NA	NA	-60	303	multi-exon	FALSE	canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATAGTCTGATCATGACG	NA	False	NA	NA	False	NA	NA	NA	123519317	123517994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_123518492_123518572
23212	chr19	+	1108	5	Antisense	novelGene_ENSMUSG00000025228.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATGCGCAGTCTAGTCG	864	False	NA	NA	False	NA	NA	NA	46370128	46384180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_46370858_46372658_46372784_46373450_46373528_46375890_46375955_46384067
23213	chr1	+	2235	9	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	0	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	343.948374578221	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATTGCTTTATATAGTACT	NA	False	NA	NA	False	NA	NA	NA	4878133	4916959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878210_4898786_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4915931_4916103
23214	chr2	+	2151	8	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-9	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	452.000903015172	3	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATTTTGTTCTAACT	8560	False	NA	NA	False	NA	NA	NA	72306493	72317218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312176_72313760_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
23215	chr11	-	2036	10	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	-24	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	233.62954742947	7	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTCCTGTCCCGGGTG	3832	False	NA	NA	False	NA	NA	NA	55310750	55285329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290117_55292845_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
23217	chr7	-	2992	7	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	3	-6	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	86	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTTTGGGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	55612221	55581040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
23218	chr8	-	2368	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-12	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	199.952772201615	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615032	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591862_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
23219	chr15	-	3134	5	NNC	ENSMUSG00000116295.2	novel	510	4	NA	NA	1	-1624	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	335.890607192282	93	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTACAATCCTATTGCA	NA	False	NA	NA	False	NA	NA	NA	97065122	97056533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97059277_97059835_97059964_97063982_97064057_97064383_97064508_97065057
23220	chr7	+	4118	32	NNC	ENSMUSG00000030835.7	novel	4257	31	NA	NA	35	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.1319204905517	389	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTTGTAACTTGGCAT	8128	False	NA	NA	False	NA	NA	NA	45683156	45733620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45683196_45683283_45683397_45686982_45687073_45687966_45688013_45690892_45690994_45691955_45692063_45693654_45693728_45694684_45694838_45695272_45695411_45696332_45696423_45699693_45699800_45699969_45700121_45703925_45704101_45706018_45706161_45706500_45706633_45707839_45707977_45710302_45710391_45711192_45711257_45712390_45712487_45715585_45715805_45715883_45715967_45717802_45717963_45718095_45718223_45719346_45719461_45720198_45720327_45721921_45722064_45725498_45725583_45727449_45727561_45728914_45729017_45730818_45730939_45732658_45732752_45733026
23221	chr6	-	2031	14	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	354.359043007155	6	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCATCTTGAAAGGTCAAT	1	True	NA	NA	False	NA	NA	NA	30509718	30482412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492720_30494736_30494834_30497165_30497238_30497816_30497993_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
23222	chr8	-	2131	13	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	-9	-2	combination_of_known_splicesites	FALSE	canonical	1	3	junction_12	375.73685938433	83	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCAGCAGTCATGCATGC	7630	False	NA	NA	False	NA	NA	NA	41827681	41793699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41827546
23224	chr5	+	3221	15	FSM	ENSMUSG00000079109.12	ENSMUST00000148011.8	5482	15	45	2216	5	310	multi-exon	FALSE	canonical	3	72	junction_4	18.4303708977484	145	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTAGCAGCTCTCAATC	NA	False	NA	NA	False	NA	NA	NA	143846826	143868570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
23225	chr8	+	5023	5	FSM	ENSMUSG00000078908.11	ENSMUST00000035777.10	4998	5	-51	26	-51	-26	multi-exon	FALSE	canonical	3	34	junction_3	4.52769256906871	2	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGTTATATGGGGG	NA	False	NA	NA	False	NA	NA	NA	114362415	114371785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_114362902_114364372_114364718_114365166_114365987_114366318_114366467_114368561
23226	chr10	+	2161	12	NIC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	-2	-6	intron_retention	FALSE	canonical	3	557	junction_6	52.0176384579673	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGACTTCTGATGTGCTC	1006	False	NA	NA	False	NA	NA	NA	127851062	127865896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
23228	chr2	+	4277	21	NNC	ENSMUSG00000027298.18	novel	3529	8	NA	NA	-10453	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	96.6158760245955	3	60	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATCAAAGCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	119617760	119648575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119617874_119628706_119629526_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124_119647466_119647729
23229	chr13	-	1776	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	42	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	649.951905366805	3	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTATCCCTGAATCAA	NA	False	NA	NA	False	NA	NA	NA	97334761	97312922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314328_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
23230	chr15	-	1305	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1369	206	1242	-206	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	5	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGATTCTGTGGAAGGCG	1400	False	NA	NA	False	NA	NA	NA	98831077	98829511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
23231	chr2	+	1850	1	NIC	ENSMUSG00000039515.12	novel	2586	10	NA	NA	233	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCCCCTGTGTGAGA	NA	False	NA	NA	False	NA	NA	NA	30335960	30337810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30336000_30337800
23232	chr8	+	3009	15	NNC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	9	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	146.239756313154	6	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTTGTCATTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	85415926	85426413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85415992_85416255_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425888_85425969_85426100_85426231
23235	chr4	+	2137	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	66	-651	-4	651	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	1572	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATACAATGTTTTTTTAAA	-2	True	NA	NA	False	NA	NA	NA	53011945	53022711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
23236	chr1	-	4452	9	NNC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	-39	436	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	48.7094382537922	25	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTACTTTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	30912701	30842190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_30843670_30859175_30859319_30859763_30859909_30860211_30860396_30863290_30863601_30868923_30870641_30876185_30876348_30902067_30902337_30912658
23238	chr1	+	2359	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	25	-170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	606.804522391735	2	82	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCCTCCCCCCCCCAA	NA	False	NA	NA	False	NA	NA	NA	4928061	4967958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957071_4959688_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
23239	chr12	+	2922	12	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-6	-415	intron_retention	FALSE	non_canonical	0	0	junction_11	822.725193367538	2	93	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATATTTTGGACAATGCT	NA	False	NA	NA	False	NA	NA	NA	17316589	17334356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333293_17333936
23240	chr11	+	1149	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	2	101	2	-16	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTTCATCAAGAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	9068508	9086066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
23241	chr14	-	1623	10	NIC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_8	1540.22262299807	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8732	False	NA	NA	False	NA	NA	NA	52341478	52312258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52335772_52336002_52341345
23242	chr13	+	1775	3	NIC	ENSMUSG00000074867.5	novel	700	6	NA	NA	32	400	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	4	1	88	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTGCAGTTGACATTG	NA	False	NA	NA	False	NA	NA	NA	62277778	62384358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_62277843_62381070_62381198_62382774
23243	chr16	-	3329	18	NIC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	-1	2	combination_of_known_junctions	TRUE	canonical	3	20	junction_17	97.580664883826	2	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGGAGTTTATTGCATC	NA	False	NA	NA	False	NA	NA	NA	17540773	17469082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17524262_17524348_17540619
23244	chr12	+	2593	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	6	-2	6	2	multi-exon	FALSE	canonical	3	183	junction_3	18.7929123266993	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGGCTCTTGTTTTAG	1589	False	NA	NA	False	NA	NA	NA	84363631	84390499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
23245	chr11	-	2369	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	550	0	-21	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	1191	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCAGTGTTTTTATTGC	NA	False	NA	NA	False	NA	NA	NA	99121293	99099872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
23246	chr5	+	5579	6	Intergenic	novelGene_790	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106	13	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGATGAAGTGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	106764614	106838699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_106766293_106767403_106767509_106782696_106783303_106783475_106786496_106814645_106814711_106838594
23248	chr7	-	2838	16	NIC	ENSMUSG00000034951.11	novel	2902	17	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_6	50.7763724580636	266	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGTGTTTCCTTCTTCT	8922	False	NA	NA	False	NA	NA	NA	121580936	121522061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
23249	chr18	+	1362	3	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	73	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCGCAGAAGTCCAC	NA	False	NA	NA	False	NA	NA	NA	48179786	48181427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180005_48180124_48180688_48180846
23250	chr17	-	2979	4	NIC	ENSMUSG00000052146.17	novel	712	5	NA	NA	0	-5	intron_retention	FALSE	canonical	3	4719	junction_3	674.627963316737	82	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACATGTCCACTTGTGT	NA	False	NA	NA	False	NA	NA	NA	27854214	27849402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27850230_27851252_27853218_27853299_27853450_27854177
23251	chr11	-	2537	26	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	-496	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_25	128.995193708913	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	54924767	54869933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924632
23252	chr4	-	2528	15	NNC	ENSMUSG00000028603.16	novel	2640	16	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	142.516594092887	16	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTCCTTGGCTTTTACT	NA	False	NA	NA	False	NA	NA	NA	107975711	107901039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_107902043_107912645_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
23253	chr9	+	5468	39	NNC	ENSMUSG00000033590.9	novel	6727	41	NA	NA	0	-3735	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_19	12.6504245382212	32	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTTCTTGGAGGCTCCT	5128	False	NA	NA	False	NA	NA	NA	75139301	75208604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240_75165507_75169489_75169572_75170266_75170408_75173349_75173476_75174306_75174391_75176802_75176938_75177550_75177649_75178824_75178912_75180126_75180239_75180790_75181003_75182750_75182919_75183183_75183331_75184213_75184379_75185506_75185601_75186617_75186682_75189117_75189299_75191174_75191269_75191428_75191493_75192214_75192296_75193692_75193874_75195330_75195425_75196174_75196239_75196340_75196510_75198130_75198219_75199435_75199535_75201207_75201363_75202443_75202534_75203291_75203443_75204685_75204969_75208087
23254	chr1	+	2586	2	FSM	ENSMUSG00000079445.4	ENSMUST00000113306.4	2582	2	-14	10	-14	-10	multi-exon	FALSE	canonical	3	186	junction_1	0	450	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTGAATTAGCTGCTT	NA	False	NA	NA	False	NA	NA	NA	86230941	86235017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86231277_86232766
23255	chr15	-	2394	3	NNC	ENSMUSG00000022285.18	novel	374	3	NA	NA	1425	509	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	98	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCTTCACGTCTGTTT	3288	False	NA	NA	False	NA	NA	NA	36791233	36770504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771632_36771672_36772640_36790933
23257	chr11	+	435	1	Intergenic	novelGene_2209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTATACTGTACTCATAT	7203	False	NA	NA	False	NA	NA	NA	6308746	6309181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_6308700_6309200
23258	chrX	-	3716	2	Genic_Genomic	ENSMUSG00000096966.3	novel	2298	1	NA	NA	-2984	1252	multi-exon	FALSE	canonical	3	30	junction_1	0	239	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTCACCACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	72445326	72438792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_72442387_72445204
23259	chr17	+	2153	14	FSM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	4	-9	4	9	multi-exon	TRUE	canonical	3	152	junction_5	21.3572043468894	641	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATCGTAGTATATTTGTAT	NA	False	NA	NA	False	NA	NA	NA	74702606	74731225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
23260	chr4	-	3495	9	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-6	10	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	177.349892514769	1	128	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTTTTGTTTGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	126954923	126941375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126947768_126947923_126948000_126948176_126952585_126952825_126953302_126953453_126954788
23262	chr19	+	3713	7	FSM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	-11	8872	-11	1784	multi-exon	FALSE	canonical	3	15	junction_4	3.54338193757822	109	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCGTAGAGTCCTCTAAT	NA	False	NA	NA	False	NA	NA	NA	23664781	23700160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117_23686332_23695176_23695467_23697421
23263	chr5	-	2368	16	NIC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	1	131	junction_5	527.841727119872	2	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCTGAAGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	122959356	122925792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
23265	chr9	+	4764	20	NNC	ENSMUSG00000032571.15	novel	4711	20	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	37.835992478985	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGAGTTGGGATTTTT	NA	False	NA	NA	False	NA	NA	NA	105520204	105564848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_105520590_105521394_105522169_105525864_105525999_105527515_105528099_105531150_105531286_105532014_105532237_105535617_105535792_105538535_105538682_105540240_105540360_105544948_105545133_105546184_105546373_105546944_105547156_105549842_105550009_105553941_105554107_105555307_105555520_105559383_105559516_105562329_105562431_105563332_105563422_105563544_105563654_105564313
23266	chr4	-	2880	12	NIC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	-5	-2	intron_retention	FALSE	canonical	1	98	junction_7	76.5178097348034	9	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149251122	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
23268	chr3	+	1779	6	NNC	ENSMUSG00000053931.12	novel	836	6	NA	NA	8627	1	intron_retention	FALSE	canonical	0	0	junction_1	2059.19017091671	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGATTACATGTGTACT	NA	False	NA	NA	False	NA	NA	NA	121229557	121251599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121229656_121243597_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
23269	chr4	+	2805	12	NNC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	134.001911914324	9	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCACCTTAATTTTAT	-1	True	NA	NA	False	NA	NA	NA	21848057	21875256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862182_21865926_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
23271	chr3	-	1759	12	ISM	ENSMUSG00000002227.16	ENSMUST00000002297.12	3498	20	17506	-4	16618	4	3prime_fragment	TRUE	canonical	3	1102	junction_11	100.757871952173	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104708052	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002
23272	chr2	+	2894	14	FSM	ENSMUSG00000027247.17	ENSMUST00000090614.11	2866	14	-29	1	-29	-1	multi-exon	TRUE	canonical	3	46	junction_2	93.668116113923	712	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTGGCTGTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	91480537	91502670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91480598_91482108_91482169_91484390_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
23274	chr10	+	3462	3	FSM	ENSMUSG00000060935.7	ENSMUST00000095383.6	3616	3	137	17	21	-17	multi-exon	FALSE	canonical	3	175	junction_1	7	7	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACTATGATCTACAAAGA	NA	False	NA	NA	False	NA	NA	NA	84938627	84953432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_84938862_84946662_84946730_84950271
23276	chr15	+	3464	11	Antisense	novelGene_ENSMUSG00000022614.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACTCACCGCTAACCA	NA	False	NA	NA	False	NA	NA	NA	89235344	89239777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89236090_89236184_89236285_89236357_89236470_89236563_89236730_89236805_89236986_89237057_89237157_89237234_89237343_89237412_89237548_89237659_89237807_89238036_89238224_89238292
23277	chr16	-	2500	11	ISM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	2316	215	222	-2	3prime_fragment	FALSE	canonical	3	1276	junction_6	145.026066622521	1	110	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTAATACTTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	15452948	15441975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912
23278	chr4	+	3526	4	FSM	ENSMUSG00000046862.15	ENSMUST00000037356.8	3260	4	-266	0	-251	0	multi-exon	FALSE	canonical	3	80	junction_1	39.6316371938716	189	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	143139290	143147661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_143139662_143143209_143143523_143143942_143144531_143145407
23279	chr5	+	4758	8	Intergenic	novelGene_776	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	17.63924196622	2	194	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAATTGTCAGTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	104757342	104792962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104757425_104783724_104783860_104784093_104784155_104785404_104786526_104786943_104787423_104787506_104788020_104789954_104790450_104791090
23282	chr11	+	1974	13	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCGGCTGCGTCCCGGCA	NA	False	NA	NA	False	NA	NA	NA	106672376	106679318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106672762_106673317_106673522_106674786_106674845_106674926_106674987_106675237_106675350_106675704_106675879_106675961_106676118_106676215_106676368_106676897_106676959_106677051_106677189_106677276_106677371_106677734_106677906_106679108
23283	chr9	+	3911	25	NNC	ENSMUSG00000032115.15	novel	3374	26	NA	NA	-5	31	intron_retention	FALSE	canonical	0	0	junction_8	215.009285975177	2	152	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTGTGCAGACAGGACTA	NA	False	NA	NA	False	NA	NA	NA	44290914	44302851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291235_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293861_44295405_44295599_44295733_44295869_44295958_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
23284	chr18	-	2362	6	NNC	ENSMUSG00000047989.12	novel	909	6	NA	NA	50	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	293.661710136	5	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTGGGGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	24254960	24237816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24238493_24238575_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
23285	chr14	-	2245	8	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1863.23372617805	2	79	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTATTGCTGTACT	NA	False	NA	NA	False	NA	NA	NA	36857252	36842781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36849607_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
23286	chr11	-	1959	11	Antisense	novelGene_ENSMUSG00000034708.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCATGTGTCCTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	102327635	102324062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_102324175_102324309_102324394_102324758_102324869_102324964_102325101_102325222_102325336_102325528_102325651_102325882_102325987_102326073_102326316_102326532_102326767_102326847_102327073_102327158
23287	chr6	+	1996	6	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_2	527.839899969678	5	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2940	False	NA	NA	False	NA	NA	NA	122285954	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289299_122292015_122292126_122292262_122292394_122293008_122293136_122293286
23288	chr7	+	4474	6	FSM	ENSMUSG00000057093.15	ENSMUST00000120004.8	4612	6	124	14	124	-14	multi-exon	FALSE	canonical	2	13	junction_1	18.2362276800878	182	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTGGCTAAAACTGTGT	NA	False	NA	NA	False	NA	NA	NA	27388888	27405895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27388912_27390639_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
23289	chr7	-	3258	11	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	203	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	74.7048191216604	3	96	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	2868	False	NA	NA	False	NA	NA	NA	3214128	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3206105_3206208_3207740_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722
23290	chr10	+	2622	14	NNC	ENSMUSG00000004929.13	novel	2832	13	NA	NA	-39	-343	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	199.332911149804	521	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCCTGCCTGGTCCTCT	5503	False	NA	NA	False	NA	NA	NA	80905921	80918050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80906113_80908986_80909200_80911344_80911494_80912388_80912575_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
23291	chr4	-	2554	11	NIC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-15	-12	combination_of_known_splicesites	FALSE	canonical	3	9	junction_10	211.927440412987	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATTTAATAACTATCAGC	5	True	NA	NA	False	NA	NA	NA	48279573	48193334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48279383
23293	chr14	+	2574	7	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	1156	-1889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	200.02888680277	53	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52524346	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52524447_52524757_52524857_52524914_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
23294	chr2	+	3324	13	NNC	ENSMUSG00000036617.18	novel	4786	18	NA	NA	-140	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	72.5425162691967	1	51	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGGGGTTTTGTTGTTT	4656	False	NA	NA	False	NA	NA	NA	20524461	20790513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20764355_20764463_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854
23295	chr19	-	1910	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-43	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1162.82800946307	2	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGTGAATTATTCTGC	NA	False	NA	NA	False	NA	NA	NA	15902337	15882485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883477_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
23296	chr3	-	3172	19	FSM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	-6	16	-6	-16	multi-exon	TRUE	canonical	3	106	junction_7	14.5610676585896	229	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGATTCATGAGAATGAA	NA	False	NA	NA	False	NA	NA	NA	52924664	52889311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
23297	chr16	-	2861	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	9	-12	9	12	multi-exon	TRUE	canonical	3	300	junction_3	44.5146667465405	3	80	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGTGTGTGTAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	8490010	8476431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
23298	chr8	+	2804	7	ISM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	-9	12	-3	-5	intron_retention	FALSE	canonical	3	724	junction_4	83.6827673751027	77	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAATACGGCTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	61343475	61360602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581
23299	chr11	-	2842	7	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCCAACTCACAGCCAGG	NA	False	NA	NA	False	NA	NA	NA	72341839	72338139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72338464_72338553_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340658_72340816
23301	chr11	+	3326	23	FSM	ENSMUSG00000038534.20	ENSMUST00000090020.13	3771	23	192	253	0	-253	multi-exon	FALSE	canonical	3	35	junction_2	33.8534762061397	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATGGGGAGCAGTCTGG	NA	False	NA	NA	False	NA	NA	NA	96941645	96959477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
23302	chr1	+	3669	9	FSM	ENSMUSG00000026634.17	ENSMUST00000066632.14	3714	9	43	2	43	-2	multi-exon	FALSE	canonical	3	110	junction_1	32.0263563334951	131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTTGTGGACAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	190660731	190679157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
23303	chr9	+	4506	9	NIC	ENSMUSG00000031993.8	novel	5762	11	NA	NA	-52	-993	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	14.396180048888	32	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAGGTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	30338351	30377029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_30340553_30343530_30343670_30344625_30344727_30344831_30344952_30347107_30347239_30348070_30348168_30348645_30348827_30374515_30374604_30375581
23304	chr1	+	2938	13	NIC	ENSMUSG00000026280.18	novel	513	6	NA	NA	-9	-1176	combination_of_known_junctions	FALSE	canonical	2	16	junction_1	90.4551761309926	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTGTGTGTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	93679212	93717156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93679304_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
23305	chr14	-	3526	6	NNC	ENSMUSG00000060548.14	novel	1087	6	NA	NA	-6310	26	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	25.9615099714943	70	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATGTGTCAAGTCAAAAT	NA	False	NA	NA	False	NA	NA	NA	61219644	61201297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61219532
23306	chr5	-	1833	13	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-45	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	607.194018736095	35	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCCTCTTGCTTGTT	2275	False	NA	NA	False	NA	NA	NA	138170125	138162870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165011_138166150_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
23307	chr17	+	2004	14	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-1	-135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	350.93778001775	2	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAATGGGGACCCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	21165747	21186032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180878_21181846_21182002_21182835_21182979_21185500_21185593_21185716
23308	chrX	+	4725	7	FSM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	447	39	1	-39	multi-exon	FALSE	canonical	3	206	junction_6	19.4736288919714	173	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATGTTATATGTGCCAA	NA	False	NA	NA	False	NA	NA	NA	97981813	97992584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
23309	chr14	+	2235	10	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	43	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	503.703935185132	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTTGTTTCCACTTCCCT	8934	False	NA	NA	False	NA	NA	NA	55777765	55786379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785788
23310	chr14	+	1801	8	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-2183	1289	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3724.63414995626	2	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTGCTGCAGTTTCAA	168	False	NA	NA	False	NA	NA	NA	63370783	63380601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63370916_63371413_63371500_63373060_63373172_63373855_63374030_63375799_63375931_63376447_63376565_63379182_63379312_63379680
23311	chr13	-	1269	1	NIC	ENSMUSG00000021569.11	novel	3399	13	NA	NA	7485	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTCTTATTTTTATTC	440	False	NA	NA	False	NA	NA	NA	74061848	74060579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74060600_74061800
23312	chr1	-	3879	18	NNC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	-2299	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	15.2506168687989	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCTTGGATGTCAGTAT	NA	False	NA	NA	False	NA	NA	NA	14382758	14239176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344435_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374706_14382682
23314	chr16	-	3761	7	NNC	ENSMUSG00000022863.16	novel	3013	4	NA	NA	34335	30919	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTGCGCCCCGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	78135889	78098605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_78098762_78122043_78122211_78125840_78126046_78130248_78130404_78131054_78131180_78131709_78131846_78133072
23315	chr2	-	2378	7	NNC	ENSMUSG00000027551.16	novel	2438	6	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	215.895036225168	5	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCGTATAGTTTGTATTG	NA	False	NA	NA	False	NA	NA	NA	168797194	168767288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793611_168793664_168793699_168797038
23316	chrX	+	2986	21	NNC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	168	-7	intron_retention	FALSE	canonical	0	0	junction_13	124.291834003687	1	72	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGCATCTTCCATTTCT	725	False	NA	NA	False	NA	NA	NA	20484191	20517120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514230_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516716_20516797
23317	chr10	+	1716	6	NNC	ENSMUSG00000060904.15	novel	2080	6	NA	NA	301	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	492.877915918334	9	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	88567230	88579956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88567364_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
23318	chr15	-	1652	12	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-19	-101	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2329.16393328146	3	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGGGTGTGTCTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	31601905	31591046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592436_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597608_31597656_31597722_31598145_31598207_31601746
23319	chr13	+	2170	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	582.962168583863	1	70	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588127	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611883_3612038_3614539_3614685_3614858_3614914_3614995
23320	chr4	-	1524	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	120	2763	-1	-346	multi-exon	FALSE	canonical	3	482	junction_1	226.647613038099	3	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTGTGTGTGGTTT	2612	False	NA	NA	False	NA	NA	NA	129229043	129203655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
23321	chr13	-	3886	19	NNC	ENSMUSG00000021670.15	novel	4425	20	NA	NA	7	-377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	178.219009738296	1	161	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTCTATCTAATGCTT	NA	False	NA	NA	False	NA	NA	NA	96807376	96785851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792053_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796728_96799541_96799643_96801269_96801355_96802620_96802733_96803028_96803217_96807318
23322	chr4	-	2515	20	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	121.866145178717	4	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	108975213	108918846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922934_108923062_108923126_108923324_108923436_108924111_108924197_108925559_108925692_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
23323	chr10	+	3028	9	FSM	ENSMUSG00000020109.14	ENSMUST00000146590.8	3070	9	18	24	18	-24	multi-exon	FALSE	canonical	3	91	junction_8	64.4659551623956	470	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATATATGTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	59715414	59735094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732324_59733312
23327	chrX	-	1919	4	ISM	ENSMUSG00000031387.15	ENSMUST00000135711.8	2125	7	17	5518	-8	598	5prime_fragment	FALSE	canonical	3	1962	junction_1	127.753234357839	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTGTGTCAAAAACAGTA	NA	False	NA	NA	False	NA	NA	NA	72974406	72971246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72971595_72971884_72971967_72972721_72974124_72974319
23329	chr2	-	1411	8	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-11	-931	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4645.96850912219	10	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGGCTGTGGCAAGTT	3725	False	NA	NA	False	NA	NA	NA	154734762	154714268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715513_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
23330	chr15	+	1525	5	NNC	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-33	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4835.66439980071	1358	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	98928168	98935994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915_98935099_98935161
23331	chr16	+	2508	17	NNC	ENSMUSG00000093575.2	novel	1012	9	NA	NA	20	21628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	49.2341345003647	71	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTTGGCTGCTATTATT	NA	False	NA	NA	False	NA	NA	NA	3702531	3759009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718744_3719648_3719990_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
23332	chrX	-	3515	7	NNC	ENSMUSG00000025742.6	novel	3699	7	NA	NA	149	-5	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_5	70.4258869703148	4	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATAGTTCTTGTCATCC	NA	False	NA	NA	False	NA	NA	NA	166165557	166129322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156989_166157183_166165465
23333	chr8	+	2075	16	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	-10	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	325.468209746444	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGACATTTTAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	107620257	107649723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633049_107637596_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
23334	chr14	+	3046	17	NIC	ENSMUSG00000021901.11	novel	3460	17	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	94.0883062606613	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTCTGGTTGCTATCTC	NA	False	NA	NA	False	NA	NA	NA	30973467	30981885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979582_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
23335	chr7	-	4032	6	NNC	ENSMUSG00000059975.16	novel	3711	5	NA	NA	20	111	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	15.0119952038362	78	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGATATTACAGTGCTAAC	NA	False	NA	NA	False	NA	NA	NA	29653492	29632104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29651138_29651316_29653279
23336	chr5	+	3279	15	NIC	ENSMUSG00000005514.15	novel	2636	16	NA	NA	40	-16	intron_retention	FALSE	canonical	3	231	junction_8	23.9200411234374	7	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGTTTTCTGTATTTG	2063	False	NA	NA	False	NA	NA	NA	135718051	135764164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
23337	chr13	-	1581	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-18	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	33	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314467	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312212_34312469_34312515_34312854_34312966_34313228_34313338_34314159
23338	chr6	-	3346	5	NNC	ENSMUSG00000056429.5	novel	5013	4	NA	NA	279	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.715259464169	4	31	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTACATGTATTAATACTA	4698	False	NA	NA	False	NA	NA	NA	72593704	72585402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72585873_72587272_72589094_72591054_72591139_72592506_72593433_72593659
23339	chr7	+	2265	2	NNC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	49	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	285	False	NA	NA	False	NA	NA	NA	44465721	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465825_44478069
23341	chr5	-	2960	7	NIC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	-11	765	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	94.7042179044254	71	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGAAGTGGTGATCTTT	5461	False	NA	NA	False	NA	NA	NA	150589053	150530706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_150531906_150566633_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588965
23342	chr7	+	2682	11	NNC	ENSMUSG00000038943.17	novel	3143	11	NA	NA	-6	-480	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	304.522905542424	5	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGGTGGATCAGTGT	NA	False	NA	NA	False	NA	NA	NA	79944191	79962014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959142_79959237_79960488_79960636_79960817
23343	chr14	-	1733	14	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	253.510243948804	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741018	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30739055_30739125_30739232_30739371_30739764_30739824_30740885
23344	chr6	+	3267	16	FSM	ENSMUSG00000029629.18	ENSMUST00000090632.11	3985	16	243	475	242	-407	multi-exon	FALSE	canonical	3	71	junction_1	26.0421879947818	22	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGCCTAGATAGAGTTTA	-5	True	NA	NA	False	NA	NA	NA	11926156	12007605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983
23345	chr11	+	3365	6	NIC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	553	-7	intron_retention	FALSE	canonical	3	1054	junction_1	100.15867411263	3	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGAGCTCCTTGTGCACG	5916	False	NA	NA	False	NA	NA	NA	98581839	98586798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
23346	chr4	-	2885	22	NIC	ENSMUSG00000040964.17	novel	4382	27	NA	NA	52	13	combination_of_known_junctions	FALSE	canonical	1	1	junction_21	46.1456336085418	3	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCACCGATCCCTCGGT	NA	False	NA	NA	False	NA	NA	NA	140376619	140271611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140376282
23347	chr15	+	4013	19	NNC	ENSMUSG00000008690.16	novel	3223	20	NA	NA	2267	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	241.022718052228	8	101	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACCTGTTCACCGGACA	NA	False	NA	NA	False	NA	NA	NA	89242383	89255778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254507_89254594_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
23348	SIRV3	+	1967	3	FSM	SIRV3A	SIRV303	2018	3	-1	52	-1	-52	multi-exon	FALSE	canonical	3	1857	junction_1	482	24	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCGTCGACGTCAAGAC	NA	False	NA	NA	False	NA	NA	NA	1962	7770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4568_4780_6057
23349	chr6	-	1727	7	NIC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	5197	junction_3	469.164653636889	38	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9966	False	NA	NA	False	NA	NA	NA	125471754	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
23350	chr18	-	2445	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	50	3	50	-3	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	1110	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTGGGGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	24254960	24237816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
23351	chr6	-	2639	7	NIC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	-2	-18	combination_of_known_splicesites	FALSE	canonical	3	82	junction_4	1528.48450724529	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	39397234	39374755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39382664_39382895_39387021_39387151_39397032
23353	chr11	-	3172	7	NNC	ENSMUSG00000053838.15	novel	3927	6	NA	NA	203	26	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	165.375750607182	5	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGCATTTTTTTCTTTG	9661	False	NA	NA	False	NA	NA	NA	6150212	6056431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6058356_6063242_6063432_6069333_6069523_6075417_6075562_6100494_6100628_6143153_6143477_6149942
23354	chr15	+	3691	13	Antisense	novelGene_ENSMUSG00000023015.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCTCACTCTCCGGCCGC	NA	False	NA	NA	False	NA	NA	NA	99521866	99549430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99524265_99524344_99524438_99526513_99526677_99528983_99529119_99529958_99530078_99530594_99530677_99532122_99532180_99534015_99534083_99535518_99535655_99537493_99537701_99540763_99540853_99541302_99541404_99549386
23355	chr2	-	3655	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	11	-50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	364.628042623515	2	119	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTGTGTCTTAATG	NA	False	NA	NA	False	NA	NA	NA	94268470	94242076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251797_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
23356	chr17	+	2575	11	NNC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	19	-312	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	155.469257411232	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTTTTGTATGTTAATC	NA	False	NA	NA	False	NA	NA	NA	27136165	27151245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27136260_27136597_27137009_27139770_27139906_27139993_27140094_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
23357	chr5	-	2463	13	NNC	ENSMUSG00000037936.16	novel	2521	13	NA	NA	18	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	237.907311549874	4	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	125404765	125354150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125403223_125403493_125404625
23358	chr5	+	3962	22	NNC	ENSMUSG00000036817.15	novel	4134	23	NA	NA	2887	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	283.155206111947	1	161	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATGTGCGATTTCAAGT	254	False	NA	NA	False	NA	NA	NA	139200908	139235547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139201010_139209348_139209541_139211017_139211220_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172_139235086_139235140
23359	chr6	-	2838	3	Antisense	novelGene_ENSMUSG00000023505.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	17	150	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCACGCCCCCTGCCCCGA	8606	False	NA	NA	False	NA	NA	NA	124810838	124807163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_124807612_124808322_124809398_124809523
23360	chr11	+	3883	18	NNC	ENSMUSG00000020705.7	novel	445	2	NA	NA	-478	-2	at_least_one_novel_splicesite	FALSE	canonical	2	54	junction_1	112.518818110864	359	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTCTTTTATCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	106107273	106139963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106107379_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
23361	chr9	+	2004	12	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	60	9	-21	-5	intron_retention	FALSE	canonical	3	5755	junction_3	203.476073278148	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGAACTGTGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	108765760	108778682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006
23362	chr9	+	2034	11	NIC	ENSMUSG00000010048.11	novel	2056	12	NA	NA	0	-10	intron_retention	FALSE	canonical	3	631	junction_10	36.7456119829293	732	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCCCCCTGTGGCCTTT	NA	False	NA	NA	False	NA	NA	NA	107464924	107470227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469571_107469673
23363	chr3	+	3442	16	NIC	ENSMUSG00000028164.16	novel	3675	17	NA	NA	1	-87	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	41.2960046493605	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACAGATTATATAAATTG	NA	False	NA	NA	False	NA	NA	NA	135191372	135277078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135272248_135272392_135273224_135273483_135275975
23364	chr2	-	3245	9	NNC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	-6	-953	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_6	223.608474794673	323	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGCTTTTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	34760951	34740698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753548_34755538_34755668_34755993_34756108_34760761
23365	chr4	+	1890	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	7	1	7	-1	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	1530	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGAGTTGCATTTCATAA	8222	False	NA	NA	False	NA	NA	NA	101504921	101516560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
23366	chr18	+	2094	11	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	427.439305632975	3	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAATTAAAGATGTAATCA	6432	False	NA	-90	True	NA	NA	NA	77126250	77240819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217813_77232728_77232839_77237756_77237795_77240310
23367	chr13	-	3382	17	NNC	ENSMUSG00000039233.13	novel	1844	17	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	35.8882270912064	11	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTGCCCTTTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	14214208	14172531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_14172767_14172947_14174282_14174336_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
23368	chr6	+	2304	10	NNC	ENSMUSG00000030264.15	novel	692	4	NA	NA	85	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	227.705950734714	539	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	113023503	113045234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113023811_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
23369	chr1	-	2181	9	NIC	ENSMUSG00000016481.16	novel	2776	10	NA	NA	3	-473	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	81.0361609098062	59	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTTCAAGCTCAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	194813635	194780162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
23371	chr16	-	3017	1	Antisense	novelGene_ENSMUSG00000005262.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGCCCTTATCAGATTCT	NA	False	NA	NA	False	NA	NA	NA	18653079	18650062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18650100_18653100
23372	chr6	-	3127	18	NNC	ENSMUSG00000029676.16	novel	3151	18	NA	NA	-10	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	34.5227471271356	241	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTTGATGAATTTTCT	-10	True	NA	NA	False	NA	NA	NA	25809235	25743760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758825_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
23374	chr7	-	3043	20	NNC	ENSMUSG00000063550.9	novel	3132	20	NA	NA	1	-37	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_19	36.701309916466	4	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAGGGTTGATGCAAAG	9997	False	NA	NA	False	NA	NA	NA	101859356	101794571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859275
23375	chr2	+	5421	39	NIC	ENSMUSG00000039943.17	novel	5217	37	NA	NA	-5	-15	combination_of_known_junctions	TRUE	canonical	3	59	junction_1	18.1510475266798	67	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATGAAAACACATGTAA	NA	False	NA	NA	False	NA	NA	NA	135501468	135856498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_135501651_135583749_135583808_135647468_135647526_135719302_135719402_135749418_135749500_135750269_135750330_135752020_135752165_135771874_135771955_135774168_135774223_135780179_135780262_135781129_135781231_135781866_135781925_135788965_135789075_135792131_135792343_135793912_135794007_135796265_135796346_135796834_135796920_135799974_135800066_135800561_135800658_135803638_135803740_135808944_135809087_135809836_135809922_135810240_135810366_135812313_135812366_135813677_135813781_135814831_135814997_135818018_135818224_135823952_135824042_135824895_135825047_135829399_135829450_135829756_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135852855_135852893_135854885
23376	chr2	-	2000	12	ISM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	17738	0	-9003	0	3prime_fragment	FALSE	canonical	3	32	junction_1	36.244349801893	16	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	False	NA	NA	False	NA	NA	NA	5051011	5025454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
23377	chr4	+	4333	15	NNC	ENSMUSG00000028737.16	novel	4142	15	NA	NA	18	-1	intron_retention	FALSE	non_canonical	0	0	junction_14	61.0403011734619	1	137	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATATTTTGATCGTGTG	NA	False	NA	NA	False	NA	NA	NA	139350437	139376997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468_139376569_139376742
23379	chrX	-	2886	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3468	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	450.570402379029	1	101	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227824	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085587_23085800_23087092_23094823_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
23380	chr10	-	2731	16	FSM	ENSMUSG00000020166.16	ENSMUST00000169921.8	2120	16	11	-622	0	0	multi-exon	FALSE	canonical	3	93	junction_15	117.305110242005	607	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417405	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385011_116417357
23381	chr5	-	4287	11	NIC	ENSMUSG00000041740.17	novel	3112	17	NA	NA	717	-1	intron_retention	FALSE	canonical	3	1263	junction_10	146.147493991515	5	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGAGCCGCCTTCCCGAC	NA	False	NA	NA	False	NA	NA	NA	115395234	115379834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115387230_115387455_115388190_115389124_115389521_115393408_115393500_115395032
23382	chr17	+	1483	10	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	16	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1113.72598975103	102	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135284	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141611_13143217
23383	chrX	+	4043	17	NIC	ENSMUSG00000035967.16	novel	3608	18	NA	NA	-13	0	intron_retention	FALSE	canonical	3	44	junction_9	15.57040461902	122	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTCTAGGTGTATGTCT	NA	False	NA	NA	False	NA	NA	NA	55500203	55553200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
23384	chr7	-	3702	21	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	-3	intron_retention	FALSE	canonical	3	82	junction_9	28.3398570920885	2	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697703	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
23385	chr5	-	2425	10	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	15	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	700.465471342599	2	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTATTATTTATCTTGT	NA	False	NA	NA	False	NA	NA	NA	92231561	92201587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202873_92204150_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221011_92221138_92231387
23386	chr8	+	2163	17	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_3	155.25431505678	286	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85415911	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417202_85417401_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
23389	chr10	+	3311	5	NNC	ENSMUSG00000096856.8	novel	4735	4	NA	NA	0	-605	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	20.4129248271775	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTATTGTTGTGATAGAG	NA	False	NA	NA	False	NA	NA	NA	81484892	81502590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81485001_81497831_81497959_81498158_81498220_81498756_81500348_81501166
23390	chr6	-	1545	11	FSM	ENSMUSG00000004980.17	ENSMUST00000204158.3	1542	11	0	-3	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2968.11001312283	13	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
23391	chr4	+	5056	20	FSM	ENSMUSG00000028528.18	ENSMUST00000106930.8	5127	20	69	2	69	-1	multi-exon	TRUE	canonical	3	57	junction_1	19.3392228428705	86	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTTTAGAAATATACATT	NA	False	NA	NA	False	NA	NA	NA	101353913	101499994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_101353961_101389194_101389260_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471369_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
23392	chr12	+	2570	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	71	-439	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGGTTTTGCATCCGTG	NA	False	NA	NA	False	NA	NA	NA	86516961	86567960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86566064_86566887
23393	chrX	+	3395	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-38	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.102633177634	2	124	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCAGTTGGTGAGAGCA	NA	False	NA	NA	False	NA	NA	NA	158315625	158376070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331232_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358090_158375066
23394	chrX	+	1689	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	44	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1441.18720505006	1	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGGAAGTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	105230812	105247295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246863
23395	chr14	+	1932	6	NIC	ENSMUSG00000025290.18	novel	525	7	NA	NA	10	-5	intron_retention	FALSE	canonical	3	88	junction_4	4975.96784555527	18	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACACGTCTGCTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	24540758	24545921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24544119_24545518_24545842
23398	chr15	-	973	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	129	641	2	-641	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAATGCCTGCTTTGAGC	160	False	NA	NA	False	NA	NA	NA	98832317	98829946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
23399	chr3	+	1840	5	NIC	ENSMUSG00000053931.12	novel	2214	6	NA	NA	-4	0	intron_retention	FALSE	canonical	0	0	junction_2	2332.53049283391	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	121220141	121251848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_121220478_121243597_121243720_121245531_121245649_121248595_121248743_121250730
23400	chr17	-	4477	4	FSM	ENSMUSG00000023961.17	ENSMUST00000143137.2	4445	4	-36	4	9	-4	multi-exon	FALSE	canonical	2	9	junction_3	11.5854314646552	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCCAAACAAATATATCAGC	NA	False	NA	NA	False	NA	NA	NA	44416691	44407210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416601
23401	chr5	-	2640	18	FSM	ENSMUSG00000029554.16	ENSMUST00000031534.9	2640	18	-9	9	-9	-4	multi-exon	FALSE	canonical	3	167	junction_17	17.902078903461	430	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCGGATTGTGTCCAAG	NA	False	NA	NA	False	NA	NA	NA	140307316	139994452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
23402	chr10	+	2357	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	0	-5	0	5	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	997	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTGGCTCAAGTGA	NA	False	NA	NA	False	NA	NA	NA	44144353	44240292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
23403	chr16	+	3402	8	ISM	ENSMUSG00000043065.13	ENSMUST00000050897.7	4627	18	317	15899	24	-1041	intron_retention	FALSE	canonical	0	0	junction_1	50.5694107749186	3	98	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGAGCTCATTGATGCCC	6425	False	NA	NA	False	NA	NA	NA	44167800	44192961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242
23405	chr2	+	2607	12	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-8	-435	intron_retention	FALSE	canonical	3	800	junction_1	84.7963043011928	9	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	164675718	164681504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675771_164675949_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164680073_164680560_164680651_164680764_164680870_164681070
23406	chrX	+	1891	7	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	14	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	779.417303716907	3	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCAGTTTTGGGTGTAC	NA	False	NA	NA	False	NA	NA	NA	139357375	139376882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357560_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
23407	chr9	+	1456	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6139.92890737786	17	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGCTTTGTTCCACAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083448_64084252_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
23408	chr1	-	3071	4	ISM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	110	2623	19	-169	5prime_fragment	FALSE	canonical	3	765	junction_3	81.3183046224321	223	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGCTCTTAACCTTTG	NA	False	NA	NA	False	NA	NA	NA	38036286	38026892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_38029539_38033072_38033192_38034713_38034923_38036189
23410	chr15	+	4401	10	Antisense	novelGene_ENSMUSG00000103047.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	29	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAGGCAACTTAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	8664457	8739966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_8665830_8668541_8668677_8671667_8671861_8672383_8672613_8675138_8675437_8679026_8680537_8717193_8717301_8717774_8717908_8738043_8738324_8739822
23411	chrX	-	2651	4	NIC	ENSMUSG00000031167.17	novel	1274	6	NA	NA	-2	246	intron_retention	FALSE	canonical	3	1120	junction_2	82.4472895585753	6	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTAAGTTTGCTTT	6559	False	NA	NA	False	NA	NA	NA	8011938	8008351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009991_8010086_8010919_8011193_8011312_8011876
23412	chr6	-	3939	19	NIC	ENSMUSG00000035245.13	novel	4424	18	NA	NA	-11	8	combination_of_known_junctions	FALSE	canonical	3	4	junction_17	11.1428712748068	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTCAGGATTTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	97125832	97086976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97124970_97125151_97125220_97125792
23413	chr16	+	3068	29	NNC	ENSMUSG00000038084.17	novel	6230	29	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	101.291676985479	2	66	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	29398198	29470697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444358_29448482_29448538_29448901_29449013_29467754_29467830_29470571
23414	chrX	+	1701	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	44	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1441.18720505006	15	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105230812	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246551_105246865
23416	chr3	+	3051	8	ISM	ENSMUSG00000039988.15	ENSMUST00000040787.13	3903	13	27844	0	-13263	0	3prime_fragment	FALSE	canonical	3	289	junction_3	26.3105472759345	286	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGTGCCTATTAATCC	NA	False	NA	NA	False	NA	NA	NA	157680894	157713671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
23417	chr5	-	2394	13	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	219.668863797813	1367	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4349	False	NA	NA	False	NA	NA	NA	123887449	123866488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123873884_123873960_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
23418	chr17	+	2594	5	ISM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	4648	1	-1	-1	3prime_fragment	FALSE	canonical	3	169	junction_1	52.3473972609909	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATTAGTCCTGATTTTT	5	True	NA	NA	False	NA	NA	NA	23824477	23829985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
23419	chr5	-	2536	9	FSM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	754	-1141	-15	-9	multi-exon	FALSE	canonical	3	230	junction_2	358.236915322807	2147	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAATCTCAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	100186769	100181444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
23420	chr13	-	3331	10	FSM	ENSMUSG00000005312.16	ENSMUST00000076454.8	3561	10	233	-3	233	3	multi-exon	FALSE	canonical	3	487	junction_3	294.557588324433	382	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTGTCTCGCCTCTTT	1994	False	NA	NA	False	NA	NA	NA	58363200	58323973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
23421	chr11	+	1681	11	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	386.310820454204	6	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4823994	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119_4843781_4843982
23422	chr17	-	2410	2	Antisense	novelGene_ENSMUSG00000096696.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	87	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAATATTATCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	17309885	17306182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_17306211_17307503
23423	chr7	+	2634	5	NIC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-6	-6	intron_retention	FALSE	canonical	3	6204	junction_3	166.322540565012	7	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATCAGGCATGCTAA	NA	False	NA	NA	False	NA	NA	NA	142606524	142621647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_142606804_142616229_142616345_142618945_142620500_142620883_142620971_142621048
23424	chr2	-	2686	16	NIC	ENSMUSG00000027634.15	novel	2586	16	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_15	44.4400220021948	144	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	6051	False	NA	NA	False	NA	NA	NA	156833839	156769264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833681
23425	chrX	+	2429	8	NNC	ENSMUSG00000073125.11	novel	3780	7	NA	NA	134	2	intron_retention	FALSE	canonical	2	2	junction_1	515.627337347825	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAGACTTGTTGGCATG	NA	False	NA	NA	False	NA	NA	NA	72235961	72246528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72236038_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
23426	chr3	-	1741	4	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	50	-5	intron_retention	FALSE	canonical	3	9125	junction_1	860.871780361177	25	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049959	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86046556_86048545_86048734_86049004_86049109_86049814
23427	chr11	+	1594	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	-1	33	-1	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	4	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGACAGTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653618	120655212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120655200
23428	chr5	-	2569	9	NIC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	0	465	intron_retention	FALSE	canonical	3	1613	junction_5	124.188302085986	5	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAACCGTGCTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	117527087	117517216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
23429	chr6	-	2330	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	66	3	0	-3	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	2	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	8956	False	NA	NA	False	NA	NA	NA	47790298	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
23430	chr14	-	2405	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	926	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	1013.63834156962	2	62	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTTGTTTTCCAGTAT	NA	False	NA	NA	False	NA	NA	NA	63746217	63728869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730218_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
23431	chr10	+	3272	23	NIC	ENSMUSG00000019984.17	novel	4798	29	NA	NA	21	451	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	14.3144295227572	1	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGACTGGAGATTCAATGA	NA	False	NA	NA	False	NA	NA	NA	24745904	24783114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079
23433	chrX	+	2207	15	ISM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	2	145	2	-145	intron_retention	FALSE	canonical	2	22	junction_1	345.91662467203	8	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTACTGATGTTCACTT	NA	False	NA	NA	False	NA	NA	NA	154045502	154080497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576
23434	chr8	+	2639	21	FSM	ENSMUSG00000032939.15	ENSMUST00000109547.2	2847	21	2	206	2	0	multi-exon	FALSE	canonical	3	1090	junction_4	53.8961037552809	1	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	94954290	95041488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
23435	chr5	-	2781	8	Antisense	novelGene_ENSMUSG00000029110.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCCGTTCAAGCAAGCCT	3161	False	NA	NA	False	NA	NA	NA	34510777	34493807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_34493886_34499865_34500024_34504118_34504245_34506006_34506089_34507252_34507417_34508135_34508178_34508570_34509777_34509852
23436	chr17	-	2114	12	NIC	ENSMUSG00000023942.16	novel	1996	13	NA	NA	1	0	intron_retention	FALSE	canonical	3	154	junction_11	726.367152113462	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906481	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
23438	chr17	+	4486	3	NIC	ENSMUSG00000041881.14	novel	438	3	NA	NA	9	0	intron_retention	FALSE	canonical	3	8081	junction_1	317	854	77	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAATCTGTCTTTTCTT	4124	False	NA	NA	False	NA	NA	NA	34043595	34057283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34043655_34044574_34048791_34057072
23440	chr11	+	2019	8	NIC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	-5	0	intron_retention	FALSE	canonical	3	10	junction_1	225.027889427973	738	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68936467	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68936835_68938551_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
23441	chr18	+	1381	2	Genic_Genomic	ENSMUSG00000058625.7	novel	1355	1	NA	NA	-105	152	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	82356481	82358093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_82357317_82357547
23442	chr6	-	2074	10	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-479	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2225.50063170703	30	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGAAATTGTGTAATTA	NA	False	NA	NA	False	NA	NA	NA	51447353	51439748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440185_51441091_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
23444	chr4	-	2483	8	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	678.820916541833	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327227	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141304129_141304291_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317391_141327184
23445	chr17	-	3285	16	Antisense	novelGene_ENSMUSG00000002372.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.249443825784929	21	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCGGCCGCGCGCCTGCG	5530	False	NA	NA	False	NA	NA	NA	57018756	56980251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56980410_56993003_56993060_56999518_56999721_57003600_57003637_57003715_57003787_57008019_57008086_57008445_57008541_57009761_57009889_57012454_57012569_57013859_57013961_57014157_57014952_57015168_57015279_57016211_57016331_57017081_57017230_57017589_57017775_57017853
23446	chrX	+	2541	1	Antisense	novelGene_ENSMUSG00000046942.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCCCCTCTGAAAATCC	NA	False	NA	NA	False	NA	NA	NA	78666836	78669377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_78666800_78669400
23447	chr9	-	3935	25	NNC	ENSMUSG00000036057.12	novel	5346	25	NA	NA	-11	-21	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	19.8093342195598	152	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATTCTGTGGCCATTGT	NA	False	NA	NA	False	NA	NA	NA	110237292	110214170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110214801_110214881_110214996_110215085_110215225_110215312_110215418_110215521_110215707_110215798_110216319_110217808_110217989_110218079_110218232_110218308_110218464_110218540_110218859_110219110_110219257_110219537_110219604_110219697_110219813_110219918_110219999_110220111_110220171_110220276_110220334_110220701_110220750_110220834_110220967_110221049_110221131_110221552_110221685_110221770_110221821_110222438_110222516_110222768_110222897_110227188_110227264_110237101
23448	chr10	+	1557	9	ISM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	679	118	-481	0	3prime_fragment	FALSE	canonical	3	8904	junction_2	906.111472171057	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	127919820	127926142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
23449	chr8	+	2368	12	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	302.098254499924	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTCTGTGTTTCT	3016	False	NA	NA	False	NA	NA	NA	13389663	13428441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141_13427352_13427432
23450	chr8	-	2890	13	ISM	ENSMUSG00000031751.15	ENSMUST00000053766.14	3880	14	7648	335	6933	-335	3prime_fragment	TRUE	canonical	3	217	junction_1	15.9711110724611	69	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAACTGCTGTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	94731822	94698550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_94699943_94700686_94700872_94701363_94701448_94702661_94702797_94706945_94707050_94709939_94710131_94711461_94711573_94711966_94712101_94714001_94714135_94714346_94714388_94725725_94725879_94726932_94727098_94731760
23451	chr5	-	2271	15	Intergenic	novelGene_720	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	241	9	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCGGGGAAAGAGGCGTAG	NA	False	NA	NA	False	NA	NA	NA	64285646	64250266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_64250429_64254318_64254487_64258283_64258395_64260194_64260281_64260718_64260802_64261054_64261255_64263100_64263293_64263952_64264046_64265008_64265191_64265510_64265611_64267863_64267993_64269354_64269539_64273638_64273774_64285116_64285345_64285428
23453	chr9	-	3265	9	FSM	ENSMUSG00000039048.16	ENSMUST00000143039.8	3260	9	-11	6	-1	-6	multi-exon	FALSE	canonical	3	185	junction_7	18.9917745353087	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGGCAGCCTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	35122277	35115509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711
23454	chr15	+	1266	8	Antisense	novelGene_ENSMUSG00000022241.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGCTGAAGGAGAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	11383747	11388542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_11384246_11385169_11385288_11387140_11387209_11387347_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383
23456	chr13	-	2547	16	NNC	ENSMUSG00000006191.18	novel	2629	16	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	47.1571368464579	15	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTATTGGACTTTAA	NA	False	NA	NA	False	NA	NA	NA	30039628	29509281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701487_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
23457	chr2	+	6560	12	FSM	ENSMUSG00000004085.15	ENSMUST00000135469.8	6663	12	94	9	28	-9	multi-exon	FALSE	canonical	3	17	junction_11	6.87671841784634	26	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTAAATCCCTTTGTTA	3419	False	NA	NA	False	NA	NA	NA	72116165	72237837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72232332
23458	chr3	-	2247	15	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	116.882550503678	53	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTATGATATTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	95763103	95737929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743852_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
23459	chr9	+	1656	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	730.738092615952	15	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183569	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204918_108212194_108212381_108213846_108214046_108214255
23460	chrX	+	1183	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	96	-69	96	69	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	13068905	13070088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068900_13070100
23462	chr7	-	4598	23	NNC	ENSMUSG00000063550.9	novel	3748	23	NA	NA	-5	619	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	34.9895202728706	70	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTATTGGTTATCTTGC	9993	False	NA	NA	False	NA	NA	NA	101859332	101782790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835094_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
23464	chr4	+	2008	14	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	4060	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	237.70390810627	1	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGGTTTGGAAACTAGT	7035	False	NA	NA	False	NA	NA	NA	152034848	152065679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054404_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
23465	chr4	+	2243	9	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	120.243502942986	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801_147597358_147597440_147597630_147597965_147598133_147598801_147599093_147599343_147599760_147600267
23467	chr7	+	752	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1	13	1	-2	multi-exon	FALSE	canonical	3	142	junction_1	683.213892000318	4694	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGGTGGCAATTTCAGT	2961	False	NA	NA	False	NA	NA	NA	126810780	126813457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
23469	chr9	-	2237	14	NNC	ENSMUSG00000056131.14	novel	2666	13	NA	NA	-5	-11	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_13	173.196847341382	789	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTTTGCAGCCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	86453851	86437064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86452640_86452876_86453782
23470	chr17	-	2805	4	ISM	ENSMUSG00000039183.7	ENSMUST00000234293.2	1191	6	1	1	1	0	intron_retention	FALSE	canonical	3	632	junction_1	57.6445044118595	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	25105302	25101592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374
23472	SIRV7	+	1788	2	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCTGATATTATAATGAAA	NA	False	NA	NA	False	NA	NA	NA	1005	3111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_2679_2996
23473	chr17	+	2313	4	FSM	ENSMUSG00000036036.16	ENSMUST00000174524.8	1747	4	-589	23	-33	-20	multi-exon	FALSE	canonical	3	603	junction_1	1178.31216388339	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313340	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_37314208_37315688_37315796_37316941_37317087_37320310
23475	chr12	-	2367	14	Antisense	novelGene_ENSMUSG00000004789.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGCCCGGCAGCAACCG	7115	False	NA	NA	False	NA	NA	NA	85180739	85157631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_85157747_85162037_85162096_85165132_85165189_85165300_85165374_85165553_85165610_85166004_85166033_85168807_85168899_85169550_85169630_85170546_85170644_85175082_85175125_85176554_85176641_85177246_85177316_85177668_85177837_85179390
23476	chr11	+	2084	11	NIC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	-4	1	intron_retention	FALSE	canonical	3	682	junction_1	159.152631143817	4	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	1400	False	NA	NA	False	NA	NA	NA	120675106	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069
23477	chr11	+	2005	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	-45	5	-22	-5	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	518	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGGATTGTTTTAAGTC	8201	False	NA	NA	False	NA	NA	NA	100978080	100983028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
23478	chr11	-	3558	11	NNC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	251	-4	intron_retention	FALSE	non_canonical	0	0	junction_5	223.364186923508	10	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCACATGGGCCACTGGCT	NA	False	NA	NA	False	NA	NA	NA	6575208	6565602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568994_6569111_6569555_6569714_6569971_6571066_6573815_6573933_6574000_6574284_6575148
23479	chr16	-	2880	19	NNC	ENSMUSG00000022771.18	novel	2333	21	NA	NA	0	-134	intron_retention	FALSE	non_canonical	0	0	junction_2	209.876808369477	2	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGGGGAAAAAAAATCTCA	NA	False	NA	NA	False	NA	NA	NA	16929096	16904553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16905078_16906608_16906733_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
23480	chr5	-	4278	12	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	-1	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	692.816684757004	1	240	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATGTCCCTAATTTAATC	NA	False	NA	NA	False	NA	NA	NA	92231577	92200014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202904_92203238_92203362_92204127_92204257_92205826_92205925_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
23481	chr19	+	2109	11	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	32	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	399.246039429322	1	61	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATTTTTGTTGTGATTTT	101	False	NA	NA	False	NA	NA	NA	46064524	46072897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067520_46067694_46068346_46068525_46069742_46069862_46069979_46070099_46070741_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
23482	chr4	-	3922	17	FSM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	39	2197	3	-2197	multi-exon	FALSE	canonical	3	127	junction_2	24.1993672437938	9	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAGCCTGACTAGAAGA	NA	False	NA	NA	False	NA	NA	NA	86530253	86499288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_86500256_86501117_86502111_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
23483	chr2	-	2919	4	ISM	ENSMUSG00000038671.16	ENSMUST00000048269.12	1087	7	27	-932	-26	604	intron_retention	FALSE	canonical	3	258	junction_2	32.355662392986	12	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAATCAGTTAGATGGTG	6187	False	NA	NA	False	NA	NA	NA	181007086	181000288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_181001355_181001431_181001533_181002793_181003266_181005806
23484	chr3	-	4137	21	Antisense	novelGene_ENSMUSG00000027820.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	157	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCGGAGGCTGCAGGAA	NA	False	NA	NA	False	NA	NA	NA	63289621	63203631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_63203742_63207543_63207761_63234136_63234295_63235203_63235287_63235392_63235487_63235585_63235710_63237070_63237139_63247438_63247579_63249335_63249427_63250920_63251056_63252547_63252674_63253473_63253573_63254555_63254637_63256036_63256143_63266326_63266386_63269354_63269471_63272180_63272315_63272415_63272478_63275905_63275995_63276300_63276376_63287651
23485	chr15	-	5068	21	Antisense	novelGene_ENSMUSG00000116480.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	47	46	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCCCCAAAACCACAACAC	NA	False	NA	NA	False	NA	NA	NA	80807809	80595484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80595689_80631605_80631673_80643738_80643829_80668936_80669007_80742879_80742974_80760513_80760859_80763063_80765405_80767141_80767304_80768407_80768582_80771157_80771232_80772027_80772075_80773217_80773355_80778527_80778653_80786082_80786216_80786487_80786585_80786714_80786911_80797502_80797643_80800883_80801060_80802149_80802297_80802709_80802806_80807656
23486	chr3	+	3293	11	FSM	ENSMUSG00000008604.12	ENSMUST00000008748.8	3330	11	37	0	-1	0	multi-exon	FALSE	canonical	3	1295	junction_8	115.436605979213	38	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGTGGTTTGTTTGTTG	6142	False	NA	NA	False	NA	NA	NA	88461101	88477032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88470641_88471676_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
23487	chr9	+	3350	19	ISM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	36	6805	-8	-163	5prime_fragment	FALSE	canonical	3	586	junction_10	67.2407687913688	16	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAATTCCCTAATGTCAG	NA	False	NA	NA	False	NA	NA	NA	108225087	108262939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005
23488	chr13	+	3275	4	FSM	ENSMUSG00000090659.10	ENSMUST00000164936.10	3258	4	-13	-4	-1	4	multi-exon	FALSE	canonical	3	27	junction_3	3.39934634239519	65	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATTTTGGTCAGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	67927810	67937201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_67927939_67931908_67932036_67932512_67932609_67934277
23489	chr2	-	2690	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	72	48	1	-38	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	1	102	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTAAGAACCACTCAAATA	NA	False	NA	NA	False	NA	NA	NA	156022086	155989206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
23491	chr3	-	3185	4	FSM	ENSMUSG00000001017.16	ENSMUST00000107343.8	3118	4	-67	0	-19	0	multi-exon	FALSE	canonical	3	97	junction_1	621.962664117032	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	90416824	90406262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90407415_90410402_90410590_90413414_90414934_90416497
23492	chr1	-	3123	11	NNC	ENSMUSG00000026034.18	novel	1538	11	NA	NA	44	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	71.2082158181203	19	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGTCTATAGCTTGGT	NA	False	NA	NA	False	NA	NA	NA	58463181	58451159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58454817_58455768_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
23494	chr15	-	1596	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	139	8	12	-8	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	2	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTTTGTTTCTGGA	170	False	NA	NA	False	NA	NA	NA	98832307	98829313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
23496	chr8	-	3019	10	FSM	ENSMUSG00000040010.11	ENSMUST00000045557.10	3517	10	499	-1	499	1	multi-exon	FALSE	canonical	3	2143	junction_1	128.439734631066	828	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGACTGTGTTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	122633934	122607887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613596_122613721_122614235_122614281_122615060_122615167_122623166_122623305_122633804
23497	chr3	-	2931	9	FSM	ENSMUSG00000074513.10	ENSMUST00000143514.3	1343	9	55	-1643	-36	0	multi-exon	FALSE	canonical	3	20	junction_5	63.3733974156349	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	NA	False	NA	NA	NA	84489877	84403399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84436476_84436573_84441893_84442003_84455240_84455343_84489720
23499	chr9	-	3072	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	-252	0	-2	0	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	248	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	NA	False	NA	NA	NA	99450954	99400856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
23500	chr10	+	2059	9	NNC	ENSMUSG00000019970.16	novel	2602	12	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	351.413018220726	5	43	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21854572	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21872982_21874732
23501	chr17	-	578	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	-4	5	-1	-5	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	5303	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTACTTAAATAGACTT	6006	False	NA	NA	False	NA	NA	NA	35171448	35169223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
23502	chr9	+	2766	9	NIC	ENSMUSG00000032077.6	novel	2539	10	NA	NA	-3	-9	intron_retention	FALSE	canonical	3	99	junction_1	15.4064718543864	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTATAATCATTTCCTAA	NA	False	NA	NA	False	NA	NA	NA	46194302	46210072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_46194472_46197640_46197732_46198314_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
23504	chr7	-	2801	6	NIC	ENSMUSG00000003438.18	novel	1515	11	NA	NA	1872	-6	intron_retention	FALSE	canonical	3	2171	junction_4	114.337045615146	7	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCACAATGCCTGTGTCCA	4661	False	NA	NA	False	NA	NA	NA	28009492	28005254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007693_28007778
23505	chr5	+	2376	11	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1447	3	intron_retention	FALSE	non_canonical	0	0	junction_8	550.500363305965	6	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGTCAGTGCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	21991727	22008778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22007007_22007339_22007612_22008067_22008461_22008544
23506	chr6	+	2472	7	FSM	ENSMUSG00000038301.16	ENSMUST00000049152.15	2480	7	8	0	8	0	multi-exon	FALSE	canonical	3	298	junction_5	39.9433626804532	388	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCGATTTCTTACTT	NA	False	NA	NA	False	NA	NA	NA	51500888	51567659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_51501015_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
23507	chr10	+	3231	6	Genic_Genomic	ENSMUSG00000020070.19	novel	4502	19	NA	NA	13168	2813	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCAGGGCTATACAGAGA	NA	False	NA	NA	False	NA	NA	NA	62851203	62855802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_62851492_62851578_62851674_62851858_62851955_62852185_62852322_62853000_62853116_62853301
23509	chr4	+	2619	19	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	14	-382	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_12	144.565718320701	997	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAGAGACTATTTGGAG	NA	False	NA	NA	False	NA	NA	NA	44300889	44364293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44337991_44338052_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
23510	chr15	-	2464	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	27	319	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1208.38449572401	1	94	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATAAAATTTACTACCA	NA	False	NA	NA	False	NA	NA	NA	11399724	11383771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388183_11388305_11388383_11388547_11389661_11389768_11390428_11390497_11391146_11391294_11391899_11391979_11392055_11392101_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
23512	chr7	+	2270	6	NIC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	65	-9	intron_retention	FALSE	canonical	3	6204	junction_4	176.778958023855	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAATGGGACTGCCAGACC	NA	False	NA	NA	False	NA	NA	NA	142606595	142621662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_142606804_142616229_142616345_142618945_142620090_142620397_142620500_142620883_142620971_142621048
23513	chrX	-	2821	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115637.8	2778	6	-45	2	10	-2	multi-exon	TRUE	canonical	3	73	junction_5	15.551205741035	265	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAGCTTGAGATTTGGG	7310	False	NA	NA	False	NA	NA	NA	7940542	7927675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940354
23514	chr12	-	1916	12	Antisense	novelGene_ENSMUSG00000020571.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.862439361864103	5071	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCACGTCCCGCCCTCG	NA	False	NA	NA	False	NA	NA	NA	17334362	17316586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_17316652_17320395_17320538_17323944_17324004_17324384_17324510_17327196_17327304_17328512_17328951_17329578_17329719_17330376_17330461_17330564_17330640_17330910_17331069_17333198_17333296_17333936
23515	chr8	-	3225	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238292.2	6080	5	374	2481	0	0	multi-exon	FALSE	canonical	3	12	junction_4	30.1029483605842	149	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	NA	False	NA	NA	NA	70169113	70157786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70168933
23516	chr9	-	3819	7	NNC	ENSMUSG00000042688.17	novel	4072	6	NA	NA	28	58	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	110.382164420808	3	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATCTTTGGTTATCCTC	NA	False	NA	NA	False	NA	NA	NA	75317239	75294125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75295592_75295856_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317144
23517	chr10	-	1894	11	NIC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	40	-7	combination_of_known_splicesites	FALSE	canonical	3	9	junction_9	434.086961333786	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTTTCCTTTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85793647	85774507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85791582_85791662_85793478
23519	chr2	-	2646	17	FSM	ENSMUSG00000027634.15	ENSMUST00000069600.13	2612	17	-34	0	-21	0	multi-exon	FALSE	canonical	3	9	junction_1	53.8324948335111	421	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5893	False	NA	NA	False	NA	NA	NA	156833997	156769264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156770802_156771851_156771891_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
23522	chr17	+	2994	9	NNC	ENSMUSG00000025737.6	novel	3099	9	NA	NA	10	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	40.2909341539756	3	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGAGCTGCTGTTTGGCCA	NA	False	NA	NA	False	NA	NA	NA	26042632	26047688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046458_26046507_26046626_26046968_26047127_26047313_26047388
23524	chr7	+	4140	3	Genic_Genomic	ENSMUSG00000089631.3	novel	414	1	NA	NA	-3429	1433	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	55	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAATTAAAACCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	121726885	121732161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_121727670_121728148_121728240_121728896
23525	chr2	+	2155	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	16	2	16	-2	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	1625	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGGGGGGTTGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	172282491	172311826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
23527	chr11	-	3165	7	NNC	ENSMUSG00000049321.18	novel	2782	7	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	28.0203299211285	135	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	50806988	50789538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50792119_50796432_50796514_50796916_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
23528	chr11	-	2236	11	FSM	ENSMUSG00000018593.14	ENSMUST00000213866.2	1366	11	42	-912	42	-9	multi-exon	FALSE	canonical	3	85	junction_10	199.894497172884	12	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACGGCTGTCCTGTCCC	-2	True	NA	NA	False	NA	NA	NA	55311074	55285334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904
23529	chr11	-	3245	10	NIC	ENSMUSG00000025137.16	novel	1486	13	NA	NA	2	-3	intron_retention	FALSE	canonical	3	371	junction_4	31.3155978174881	62	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCTGTAGGCTCCCGAC	NA	False	NA	NA	False	NA	NA	NA	120508732	120500915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
23530	chr17	-	3116	22	FSM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	-12	104	-3	0	multi-exon	FALSE	canonical	3	468	junction_21	77.5978060329916	320	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATGGTGCACTTGGCCT	5671	False	NA	NA	False	NA	NA	NA	25946396	25938003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
23531	chr17	-	2157	7	ISM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	5159	8	-2276	1	3prime_fragment	FALSE	canonical	1	168	junction_4	164.31270999733	1	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTTTCTTGTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	34104476	34094640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141
23532	chr6	+	2961	10	NNC	ENSMUSG00000062190.13	novel	2245	10	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	23.6084312204635	2	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTATGGAGTCTTAATA	NA	False	NA	NA	False	NA	NA	NA	57680038	57716424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_57680249_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640_57714879_57714965
23533	chr15	-	1542	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	74	0	-74	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	9	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCATGTCTTCTCCATGT	158	False	NA	NA	False	NA	NA	NA	98832319	98829379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
23537	chr1	+	3757	15	NIC	ENSMUSG00000070732.3	novel	3851	16	NA	NA	1	-16	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	30.8108945746435	189	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTTAGCTCCTCTCTCA	4251	False	NA	NA	False	NA	NA	NA	91072811	91098501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_91072892_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
23540	chr16	+	2388	17	Antisense	novelGene_ENSMUSG00000000028.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	26	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGACACGGACAGCCCC	NA	False	NA	NA	False	NA	NA	NA	18599208	18630344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_18599324_18600645_18600718_18603560_18603630_18603820_18603942_18605518_18605602_18605678_18605818_18611926_18612089_18613510_18613610_18613843_18614695_18616098_18616148_18617423_18617488_18620550_18620602_18626031_18626176_18627483_18627620_18629138_18629238_18630060_18630117_18630266
23541	chr2	-	3444	7	NNC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	-1129	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	40.6136950082386	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATATTCTGGTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	35354372	35290197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313241_35313425_35322525_35322645_35354176
23542	chr14	+	1892	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	8	1272	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3083.48156200258	2	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359970	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373979_63375481_63375568_63375806_63375944_63376447_63376565_63379182_63379312_63379680
23543	chr8	-	2566	8	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	222.709291614491	25	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTGTGACTGATGG	NA	False	NA	NA	False	NA	NA	NA	40964710	40945583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40955329_40955369_40960495_40960690_40963055_40963268_40964580
23544	chr2	-	2040	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	-23	9	-23	-9	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	53	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACATCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	152185975	152179350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
23545	chr2	-	2093	11	ISM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	17845	3	-9003	-1	3prime_fragment	FALSE	canonical	3	118	junction_4	15.7800506970035	442	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTGTTATCTGATTT	NA	False	NA	NA	False	NA	NA	NA	5051011	5025455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
23546	chr8	+	3739	11	NNC	ENSMUSG00000015568.17	novel	1900	11	NA	NA	20	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	38.5031167569588	88	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATGATACTAAGTCATCA	NA	False	NA	NA	False	NA	NA	NA	69333328	69359577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157_69357996_69358176
23547	chr2	+	2167	5	NNC	ENSMUSG00000035772.12	novel	2429	4	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	280.38321989734	1362	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	NA	False	NA	NA	NA	28358085	28361177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_28358155_28358254_28358372_28358832_28358963_28359232_28359341_28359434
23548	chr10	-	1936	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	810.232295908608	3	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899722	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892054_116893083_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897481_116897929_116898042_116898721_116898788_116898880_116898956_116899610
23549	chr7	+	2567	3	NIC	ENSMUSG00000057229.12	novel	1465	6	NA	NA	1463	-3	intron_retention	FALSE	canonical	3	96	junction_2	18	7	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTACCCTGTGGCCTTTC	4691	False	NA	NA	False	NA	NA	NA	25321790	25324970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_25323364_25323451_25323615_25324139
23551	chr19	+	1603	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-19	5	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_2	2838.04662869846	89	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTGTGTCTGTG	4156	False	NA	NA	False	NA	NA	NA	41900457	41907104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904238_41905081_41905263_41906044
23552	chr5	+	3051	17	NIC	ENSMUSG00000014668.16	novel	3159	18	NA	NA	-1	1	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	81.0771237773023	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTGTTGTACTCCTGT	NA	False	NA	NA	False	NA	NA	NA	110283721	110319836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110283801_110283916_110284061_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
23553	chr11	+	1460	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	8	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5640	982	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAACACAGGTGTAACTAT	3043	False	NA	NA	False	NA	NA	NA	75623746	75656662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642894_75655560
23554	chr14	-	4446	27	NIC	ENSMUSG00000022021.15	novel	4582	28	NA	NA	-24	-4	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_5	55.8337690229991	53	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTAAAAGACGTATGTCTC	NA	False	NA	NA	False	NA	NA	NA	87378630	86892806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
23555	chr11	+	2838	12	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	133	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGAGGTGACGTTATAC	NA	False	NA	NA	False	NA	NA	NA	106545044	106590537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106545963_106562541_106562625_106570374_106570440_106571859_106571910_106573703_106573788_106575034_106575162_106575786_106576077_106579593_106579878_106581761_106582011_106586579_106586849_106587874_106588165_106590408
23556	chr11	-	2272	4	FSM	ENSMUSG00000020925.17	ENSMUST00000124869.8	407	4	-211	-1654	-13	0	multi-exon	FALSE	non_canonical	0	0	junction_1	267.304237818175	71	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTCTGTCTTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	102588573	102575511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102577323_102581026_102581163_102582936_102583025_102588336
23558	chr4	+	3394	6	Fusion	ENSMUSG00000082248.2_ENSMUSG00000078496.10	novel	1244	3	NA	NA	-6	2566	multi-exon	FALSE	canonical	0	0	junction_1	131.997878770835	1	192	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGATTCTACAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	147527921	147600509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147528001_147536170_147536264_147592042_147592102_147595209_147595337_147596801_147597042_147597713
23559	chr6	-	2223	17	NNC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	-2	-40	intron_retention	FALSE	canonical	0	0	junction_3	176.525316881177	550	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTATTTATTAATAAAATT	NA	False	NA	NA	False	NA	NA	NA	97182523	97161007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97161827_97162301_97162508_97162610_97162712_97163025_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
23560	chr15	-	4852	9	FSM	ENSMUSG00000016552.14	ENSMUST00000117725.2	4347	9	-11	-494	-3	1	multi-exon	FALSE	canonical	3	12	junction_8	16.6203000875435	60	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTCTGCTCTGGCATTT	8695	False	NA	NA	False	NA	NA	NA	77840886	77824724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494_77836762_77837482_77837735_77839788_77840290_77840668
23562	chr4	+	2705	22	NNC	ENSMUSG00000053510.13	novel	4179	29	NA	NA	2669	140457	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACGGCCTGACGTCAG	NA	False	NA	NA	False	NA	NA	NA	108918856	109059431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108919530_108919661_108919798_108920562_108920649_108921752_108921838_108922820_108922937_108923351_108923436_108924111_108924196_108925558_108925732_108929139_108929228_108930012_108930133_108930236_108930347_108940285_108940445_108943522_108943629_108944591_108944680_108948851_108948896_108955698_108955751_108958292_108958361_108959693_108959789_108990939_108991018_109013851_109013930_109029469_109029522_109059301
23564	chr11	-	2241	5	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-57	1625	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	75.5326915977446	125	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTCAAAAAGGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	4391162	4372442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4391080
23565	chr10	+	1690	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	3318.14612824617	1146	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	127919175	127926142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127924996_127925929
23566	chr11	-	3510	16	NNC	ENSMUSG00000086725.2	novel	2203	2	NA	NA	-46097	-1988	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTTTACCTCCGAACACA	3086	False	NA	NA	False	NA	NA	NA	29169655	29122896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_29123447_29124671_29124727_29132444_29132545_29138127_29138285_29144570_29144649_29146171_29146290_29147091_29147210_29148792_29148925_29150700_29150800_29152862_29152908_29155544_29155705_29159316_29159485_29161113_29161254_29161604_29161790_29163591_29163795_29168453
23567	chr1	+	1758	13	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	562.559996800341	63	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724146	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745937_59749700_59749812_59750429
23568	chr4	-	3165	7	NIC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-11	4	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	157.153233784383	2	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAATGAAGTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	126954928	126941381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126952585_126952825_126953302_126953453_126954788
23569	chr11	-	2883	11	NIC	ENSMUSG00000038909.17	novel	3324	14	NA	NA	6319	-5	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	275.658049039022	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTCTGACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	95194020	95165089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958
23570	chr6	+	2565	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	188.913762659638	27	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCACAAGATTTGCACAG	15	True	NA	NA	False	NA	NA	NA	30048029	30130109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30129179
23571	chr2	-	3233	16	NNC	ENSMUSG00000074643.13	novel	3441	16	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.306781203363	2	103	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGCCGCTCTTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	155953776	155913762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155915388_155915442_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920819_155920895_155920982_155921163_155921258_155921385_155953705
23572	chr7	-	3173	9	NNC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	-1	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.300296149616	13	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGGTTTCCCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	55612179	55581033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_55581637_55581743_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55594706_55594834_55611199_55611321_55611947
23573	chr4	-	2981	2	FSM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	11	0	1	0	multi-exon	FALSE	canonical	3	93	junction_1	0	208	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	148529217	148518951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148521100_148528384
23574	chr15	-	3195	17	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.8021988502342	3	114	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTGTCAGCCCCGAGC	6979	False	NA	NA	False	NA	NA	NA	98560790	98543017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543886_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548789_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
23575	chr11	-	2122	10	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	1.25707872210942	4	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTCGTTCTATCTCCACC	NA	False	NA	NA	False	NA	NA	NA	80287072	80274138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274319_80276725_80276854_80278625_80278765_80279801_80279970_80280078_80280155_80280597_80280648_80282156_80282225_80282657_80282817_80285109_80285363_80286171
23576	chr7	+	3641	14	NIC	ENSMUSG00000030539.14	novel	3949	15	NA	NA	11	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	23.9876694162578	304	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGAGACCAGAGGCTCTC	NA	False	NA	NA	False	NA	NA	NA	79836636	79876267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79836740_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
23578	chr14	+	1868	13	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	0	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	496.689876415187	6	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTCAGTTTCATAAATA	NA	False	NA	NA	False	NA	NA	NA	45567284	45587130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581139_45586215
23579	chr11	+	3548	4	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	23	-5	intron_retention	FALSE	canonical	3	210	junction_3	16.2138486760204	30	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGGCATGTTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	71933303	71938191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_71933361_71933842_71936601_71937165_71937220_71937512
23580	chr15	+	6489	3	FSM	ENSMUSG00000075470.3	ENSMUST00000100309.3	6644	3	150	5	112	-5	multi-exon	FALSE	canonical	3	65	junction_2	7.5	134	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTGTTGAATATATTT	NA	False	NA	NA	False	NA	NA	NA	90108663	90117669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_90108812_90109859_90110058_90111526
23581	chr2	+	2313	11	NNC	ENSMUSG00000017721.16	novel	2562	12	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	57.0564632622808	6	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5111	False	NA	NA	False	NA	NA	NA	164339438	164350221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349448_164349511
23582	chr10	+	1885	6	NNC	ENSMUSG00000006498.17	novel	2598	13	NA	NA	201	-2	intron_retention	FALSE	canonical	0	0	junction_2	701.582496931045	3	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTCTTCCCTGAGCCC	1088	False	NA	NA	False	NA	NA	NA	79695684	79700191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79695790_79696657_79696804_79698249_79698376_79698486_79698704_79698811_79698890_79698978
23583	chr6	-	2659	11	NNC	ENSMUSG00000030177.15	novel	1887	12	NA	NA	3285	-3	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_4	111.38150654395	2	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTCAGGGCTCTACAAA	NA	False	NA	NA	False	NA	NA	NA	120331016	120301286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311529_120311879_120315029_120315122_120316095_120316160_120318933_120319039_120325348_120325492_120327167_120327352_120330961
23584	chr1	+	2339	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	5	486	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	148.836302352481	37	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGAGTCACTTCGAGT	NA	False	NA	NA	False	NA	NA	NA	171954333	171963336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961825
23585	chr7	+	1344	5	Antisense	novelGene_ENSMUSG00000007891.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCCAAAGATCTGTTTCT	5268	False	NA	NA	False	NA	NA	NA	141929659	141934663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_141930478_141930571_141930669_141930762_141930906_141931067_141931192_141934501
23586	chr3	-	3385	18	FSM	ENSMUSG00000027889.18	ENSMUST00000078912.7	3368	18	2	-19	-2	-4	multi-exon	FALSE	canonical	3	5	junction_17	58.315690197265	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAATGAGGCATGTGAAG	NA	False	NA	NA	False	NA	NA	NA	107992713	107981383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107992562
23587	chr5	-	2869	7	NIC	ENSMUSG00000029103.17	novel	2981	8	NA	NA	-4	50	intron_retention	FALSE	canonical	3	809	junction_2	79.6249890982026	5	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTGTACAGAGTCCTTA	NA	False	NA	NA	False	NA	NA	NA	35263044	35250362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_35250731_35252193_35252371_35253319_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
23588	chr18	-	2836	5	NNC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	80	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	165.201959734139	119	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACTTTTTTTTGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	53551107	53539407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_53540138_53542196_53543800_53543959_53544153_53544577_53544692_53550911
23589	chr5	-	2605	9	NNC	ENSMUSG00000037364.13	novel	2988	20	NA	NA	38	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	341.302811847485	31	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGTGCTGTATGTCC	9570	False	NA	-53	True	NA	NA	NA	137298110	137293973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294355_137294473_137294582_137294728_137295495_137295601_137296250_137296489_137296569_137296652_137297146_137297819_137297935_137298015
23590	chr8	-	2546	14	NIC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	-1929	-6	intron_retention	FALSE	canonical	3	152	junction_10	22.5564380922229	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGATGGCACGTTTGC	NA	False	NA	NA	False	NA	NA	NA	84456888	84449998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84450532_84450607_84450707_84450820_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739
23591	chr17	+	2499	8	NNC	ENSMUSG00000002307.17	novel	601	3	NA	NA	310	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	226.475389481542	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTCTTTCCTTTACTT	6035	False	NA	NA	False	NA	NA	NA	34128884	34134559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128962_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
23592	chr2	-	2775	12	FSM	ENSMUSG00000013465.20	ENSMUST00000128876.8	2754	12	-25	4	-25	-4	multi-exon	FALSE	canonical	3	539	junction_7	56.9757089026427	443	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCATGGTGAGGAATC	NA	False	NA	NA	False	NA	NA	NA	25101418	25089731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720
23593	chr8	-	2360	8	NNC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	3	0	intron_retention	FALSE	canonical	1	4	junction_2	169.868015992249	57	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	NA	False	NA	NA	NA	108151670	108139117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108139816_108142737_108143724_108144720_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
23595	chr5	+	1803	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-20	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1142.51473442024	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	736	False	NA	NA	False	NA	NA	NA	77099603	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112380_77114476
23596	chr18	-	3005	21	FSM	ENSMUSG00000003778.15	ENSMUST00000115766.8	4258	21	30	1223	-17	-8	multi-exon	FALSE	canonical	3	33	junction_11	140.007142674936	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAGGAAAACTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	34757624	34732890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
23597	chr9	+	2536	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	-4	3	-4	-3	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	789	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20927276	20940110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
23598	chr12	-	2821	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	-95	0	-16	0	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	263	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGAGATGTGTTTACT	NA	False	NA	NA	False	NA	NA	NA	54909678	54905593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
23599	chr13	+	2671	14	NIC	ENSMUSG00000062822.9	novel	3406	14	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	45.0708843421628	388	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119599323	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119599656_119601100_119601227_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
23600	chr8	+	2742	5	NNC	ENSMUSG00000059897.6	novel	3001	4	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	40.4722126896961	611	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCATGACCCTTGTCCTG	7210	False	NA	NA	False	NA	NA	NA	69661699	69683186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494_69681130_69681376
23601	chr2	-	1640	4	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-3	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	648.455772500245	9285	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAATTCATAGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	25114669	25112190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25113381_25113945_25114057_25114135_25114245_25114439
23602	chr14	-	4020	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	126	-144	-2	144	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	505	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGCATCTGATTTGCACA	NA	False	NA	NA	False	NA	NA	NA	61794209	61769297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
23603	chr1	+	2771	15	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	125.154109083195	1	56	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTTGTACAATAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	132405132	132432626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412654_132413185_132413247_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
23604	chr2	+	2994	5	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	3337	4	384	-2	3prime_fragment	FALSE	canonical	3	270	junction_4	19.9374020373769	482	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTATAAGAAGTGAGTGTA	NA	False	NA	NA	False	NA	NA	NA	32518785	32525062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
23605	chr6	+	3435	23	NIC	ENSMUSG00000030016.15	novel	798	10	NA	NA	35	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	115.54559759665	11	94	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTTGTGTTTGTGTTGA	2480	False	NA	NA	False	NA	NA	NA	83844126	83963853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83844225_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83955003_83955070_83955975_83956892_83960957_83961057_83961758_83961878_83963539
23606	chr16	-	2117	20	NNC	ENSMUSG00000022771.18	novel	2333	21	NA	NA	-3	-143	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	202.786188452633	5	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGACTTTTGAGGGGAAAA	NA	False	NA	NA	False	NA	NA	NA	16929082	16904562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925092_16928992
23607	chr10	+	2318	11	Intergenic	novelGene_3431	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTAATCACTGGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	41594850	41628240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_41595902_41597550_41597697_41598878_41599002_41599856_41599935_41604623_41604711_41605326_41605404_41606993_41607111_41616834_41616910_41619037_41619218_41621766_41621920_41628009
23608	chr5	-	3629	19	NNC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	100.500491369108	1	123	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGATTTTGAGCCATGC	NA	False	NA	NA	False	NA	NA	NA	9211677	9168872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176644_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200482_9201797_9201909_9202872_9202994_9211613
23609	chr19	-	1940	12	ISM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	9913	2	3018	0	3prime_fragment	TRUE	canonical	3	689	junction_7	79.4852239504065	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCAGTGTATGTTTCT	NA	False	NA	NA	False	NA	NA	NA	4968402	4957258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272
23611	chr2	-	3084	5	NNC	ENSMUSG00000027286.17	novel	913	5	NA	NA	-12040	-565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	451	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCACAGGGCGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	120452041	120439863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120440022_120442813_120442909_120446332_120446466_120448350_120448461_120449453
23612	chr10	-	2751	1	FSM	ENSMUSG00000070063.3	ENSMUST00000093556.3	129	1	-1723	-899	-1723	899	mono-exon	FALSE	NA	NA	NA	NA	NA	163	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGTCAACTTGGGATGT	NA	False	NA	NA	False	NA	NA	NA	23663096	23660345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_23660300_23663100
23613	chr9	+	3422	24	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	108	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTGCGCCCGCCCGGCG	NA	False	NA	NA	False	NA	NA	NA	61824558	61854050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824962_61826182_61826253_61826893_61826976_61827156_61827239_61828299_61828529_61831186_61831503_61831915_61832093_61832252_61832426_61832811_61832970_61833642_61833803_61834319_61834446_61834630_61834750_61834835_61834916_61836944_61837045_61839083_61839204_61839355_61839472_61840510_61840552_61842662_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852705_61853905
23614	chr16	+	2132	18	ISM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	67507	0	19112	0	3prime_fragment	FALSE	canonical	0	0	junction_10	388.578627154105	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	8633	False	NA	NA	False	NA	NA	NA	48319106	48451263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
23615	chr2	-	2744	13	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	98	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGAGGCTGCAGCCTCC	NA	False	NA	NA	False	NA	NA	NA	152122353	152068803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068908_152092317_152092531_152096128_152096240_152099295_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105212_152114545_152114648_152116010_152116112_152117315_152117465_152118862_152118950_152120884
23616	chr15	+	2292	2	NNC	ENSMUSG00000044250.9	novel	1790	2	NA	NA	15437	1	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	0	733	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCCAAAAGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	97274534	97283562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_97275170_97281905
23617	chr8	+	2468	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	48	3	48	-3	multi-exon	FALSE	canonical	3	97	junction_2	2	211	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATGTGTTGTCACTAA	NA	False	NA	NA	False	NA	NA	NA	96360128	96371685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_96360412_96364437_96364672_96369734
23618	chr5	+	2096	10	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	3	185	junction_1	1259.86605206101	1	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	302	False	NA	NA	False	NA	NA	NA	77099169	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
23619	chr9	-	2973	18	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	5	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	200.637289154603	1	44	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAGGTAATTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	31043018	31000708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31017309_31017547_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
23620	chr4	+	4596	3	ISM	ENSMUSG00000001089.15	ENSMUST00000063021.7	3775	4	-48	-179	-48	179	intron_retention	FALSE	canonical	3	86	junction_1	29	2	124	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACTGACCACACGGGGAG	635	False	NA	NA	False	NA	NA	NA	136248657	136273884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_136248755_136267666_136270830_136272548
23622	chr17	-	3468	3	FSM	ENSMUSG00000008668.16	ENSMUST00000174758.8	499	3	-2972	3	-1	0	multi-exon	FALSE	canonical	3	21077	junction_1	1139	2	89	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCCGTCTCAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	34174635	34170975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34171093_34171194_34171287_34171376
23623	chr13	-	1975	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-474	intron_retention	FALSE	canonical	0	0	junction_1	236	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGTGTCCTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	34314337	34311204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312515_34312850_34313338_34314159
23624	chr2	+	2204	15	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-21	-7	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_6	157.535872170145	849	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCCAGATATTTTACTC	NA	False	NA	NA	False	NA	NA	NA	174257622	174269288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265210_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
23625	chr5	+	1955	12	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1950.59395912846	2	52	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAAGGTCAGAACTCTG	NA	False	NA	NA	False	NA	NA	NA	129864436	129875273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866248_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869086_129869127_129872208_129872316_129873810_129873914_129874423_129874497_129874588
23626	chr12	+	2263	25	NNC	ENSMUSG00000020952.11	novel	2096	25	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_21	99.1125902978807	591	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACAGCTTATTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	51424358	51496881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491600_51491801_51492453_51492520_51494354_51494424_51496689
23627	chr10	+	2864	11	Antisense	novelGene_ENSMUSG00000020130.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTAGCACAACCTCACGT	NA	False	NA	NA	False	NA	NA	NA	115050547	115087340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_115052203_115053465_115053564_115054457_115054559_115055055_115055186_115056115_115056314_115057487_115057593_115065030_115065241_115069024_115069163_115075175_115075251_115076752_115076853_115087286
23629	chr11	-	3462	15	NNC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	362.15988266544	1	126	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTCTGACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	95201013	95165089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167365_95168294_95168421_95171209_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191032_95193954_95194136_95196874_95197023_95200860
23630	chr2	+	2654	12	NNC	ENSMUSG00000040282.14	novel	2735	11	NA	NA	5	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	95.4837184857595	19	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTCTACCTGGAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	115412201	115609255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382_115608230_115608328
23631	chr2	+	3066	14	NNC	ENSMUSG00000027242.15	novel	4170	13	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	18.6975301346487	23	64	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121337246	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361772_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121373630_121374759
23632	chr9	-	3600	22	Intergenic	novelGene_996	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	14	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGATGATTTCCCGTGTCG	NA	False	NA	NA	False	NA	NA	NA	22799576	22386936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_22387485_22402111_22402235_22408002_22408156_22415338_22415404_22425273_22425388_22478998_22479182_22486410_22486492_22489932_22490112_22490753_22490889_22540235_22540415_22546904_22546984_22550025_22550078_22555038_22555143_22557258_22557362_22566517_22566659_22570342_22570442_22582080_22582252_22590205_22590358_22705043_22705227_22723612_22723838_22798872_22798982_22799154
23633	chr4	+	3943	18	NNC	ENSMUSG00000040455.18	novel	6003	18	NA	NA	-1397	-68	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	9.42425641610731	9	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTAGGCCTAGAGTTTT	4060	False	NA	NA	False	NA	NA	NA	21780339	21837802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234_21834696_21836642
23635	chr14	+	2118	14	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	0	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	475.117089274539	371	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAGTTTCATAAATACCAA	NA	False	NA	NA	False	NA	NA	NA	45567284	45587134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45574975_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
23636	chr3	+	5125	5	FSM	ENSMUSG00000003382.19	ENSMUST00000170036.8	5127	5	11	-9	11	-5	multi-exon	FALSE	canonical	3	20	junction_1	10.2072278312968	68	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTTAAATGTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	87432895	87447458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87432967_87434564_87434624_87435176_87435415_87436530_87436647_87442817
23637	chr3	+	4020	17	Genic_Genomic	ENSMUSG00000056411.3	novel	2428	1	NA	NA	-11518	-1352	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	82	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCGCCAAGTCCGCGGC	1775	False	NA	NA	False	NA	NA	NA	107981381	107993973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_107982426_107982550_107983019_107983285_107983410_107983675_107983835_107983925_107984056_107984334_107984498_107984646_107984778_107984865_107985055_107985988_107986126_107986301_107986393_107986500_107987087_107987375_107987490_107987581_107987651_107987958_107988094_107988321_107988448_107993533_107993674_107993759
23638	chr3	-	2066	16	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	1	21	junction_12	190.544296395586	11	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658817_95658943_95660318_95660443_95661630_95661828_95662069
23639	chr19	-	2885	7	NNC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.682809261507	13	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	7499	False	NA	NA	False	NA	NA	NA	44396089	44382893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44383756_44385643_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
23640	chr7	+	2662	15	NNC	ENSMUSG00000051768.10	novel	2155	17	NA	NA	-7	0	intron_retention	FALSE	canonical	2	6	junction_5	102.897040872943	7	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAACGGTTTCTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	24246615	24272859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265791_24265926_24266282_24266393_24266463_24266570_24266738_24267352_24269640_24269735_24269873_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
23641	chr3	-	3575	10	NIC	ENSMUSG00000005968.15	novel	2555	12	NA	NA	-19	-4	intron_retention	FALSE	canonical	3	51	junction_7	17.9739180034588	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCTTTGCCCCGTGGGT	6490	False	NA	NA	False	NA	NA	NA	94566129	94520069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94522132_94523076_94523161_94523928_94524035_94529357_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
23642	chr11	+	2996	8	NIC	ENSMUSG00000001755.13	novel	2386	9	NA	NA	-3	-9	intron_retention	FALSE	canonical	3	146	junction_2	16.9272151355413	17	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAAGTGCTGCTTGTGTGG	3561	False	NA	NA	False	NA	NA	NA	100973440	100977436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
23643	chr18	+	2359	1	NIC	ENSMUSG00000110277.3	novel	2003	4	NA	NA	4729	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAGAACCTTCAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	90608259	90610618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_90608300_90610600
23647	chrX	+	1816	7	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	779.417303716907	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357373	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357598_139366101_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
23648	chr7	-	3861	15	Fusion	ENSMUSG00000030788.17_ENSMUSG00000110062.2	novel	647	3	NA	NA	8970	-1506	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCTATGCCAGCCCCTC	NA	False	NA	NA	False	NA	NA	NA	110411520	110367389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_110367587_110377005_110377230_110387814_110388021_110390393_110390552_110392843_110393067_110394885_110395014_110399847_110400045_110401638_110401769_110402285_110402471_110402997_110403059_110404029_110404194_110405168_110405290_110406984_110407159_110409000_110409112_110409938
23649	chr4	+	3300	3	NNC	ENSMUSG00000029038.10	novel	1555	2	NA	NA	-5	2338	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	837.5	1701	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAACAGACTTCCCAGT	NA	False	NA	NA	False	NA	NA	NA	155789586	155803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155789919_155799918_155802593_155803179
23650	chr11	-	4207	21	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	136	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCCAATACGCACTTCGG	NA	False	NA	NA	False	NA	NA	NA	78213214	78192422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78192535_78192718_78192841_78194870_78195863_78195969_78196146_78203939_78204014_78204171_78204265_78204336_78205282_78205534_78205623_78205784_78205938_78206014_78206115_78206332_78206467_78206723_78206868_78210295_78210403_78210809_78210896_78211154_78211279_78211386_78211490_78211866_78211948_78212087_78212242_78212321_78212399_78212511_78212591_78212951
23651	chr4	-	1948	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-7	intron_retention	FALSE	non_canonical	0	0	junction_1	769.39914218824	5	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAACTTCTTTTTGTGT	2	True	NA	NA	False	NA	NA	NA	41098180	41092728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093486_41093608_41093703_41093781_41094000_41094265_41094839_41095144_41095272_41098001
23654	chr4	-	4236	14	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	68	-14	intron_retention	FALSE	canonical	3	13	junction_10	280.696513238727	1	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGATTTTCTGATTTTG	NA	False	NA	NA	False	NA	NA	NA	155845317	155825111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155825810_155830485_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155839386_155839500_155840135_155840196_155840517_155840620_155841548_155841626_155845258
23655	chr16	-	1520	13	ISM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	1	2267	1	-14	5prime_fragment	FALSE	canonical	3	4287	junction_7	411.023814868298	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGATATCGAGGTACTAA	NA	False	NA	NA	False	NA	NA	NA	87292760	87282480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
23656	chr8	-	2628	6	Antisense	novelGene_ENSMUSG00000031562.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	61	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACCTCAGTGTCGCGGTG	NA	False	NA	NA	False	NA	NA	NA	48594679	48563042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_48563283_48564692_48564822_48564998_48565138_48590291_48590408_48591211_48591912_48593375
23657	chr11	-	2306	11	NNC	ENSMUSG00000018593.14	novel	1269	10	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	284.883502505849	58	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTCCTGTCCCGGGTG	576	False	NA	NA	False	NA	NA	NA	55314006	55285329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55312068_55312192_55313826
23658	chr15	-	1256	2	ISM	ENSMUSG00000116358.2	ENSMUST00000134214.3	899	4	2239	-705	2239	705	3prime_fragment	FALSE	canonical	1	3	junction_1	0	3	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTTTGTTTCTGGAT	NA	False	NA	NA	False	NA	NA	NA	98849193	98829312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98849068
23659	chr8	+	2542	15	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	133.476685268267	563	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCTCCTCTGGTCTTC	2153	False	NA	NA	False	NA	NA	NA	70495458	70524997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70495528_70495670_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
23661	chr8	+	3244	10	NNC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	-12065	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	141.062983918882	323	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGAAGACTCCGTCTT	NA	False	NA	NA	False	NA	NA	NA	106390577	106409552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403987_106406791_106406892_106408066
23663	chr13	+	3139	25	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-5	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	371.298949260865	1	95	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGTCTGAGTTTTACT	NA	False	NA	NA	False	NA	NA	NA	6598204	6630071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6610637_6610735_6611988_6612124_6613420_6613567_6615051_6615136_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
23664	chr4	+	3221	7	NIC	ENSMUSG00000028618.12	novel	1775	8	NA	NA	-15	-14	intron_retention	FALSE	canonical	3	1513	junction_4	120.411447407074	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTATGTTCTGAAGCTT	NA	False	NA	NA	False	NA	NA	NA	107035907	107058177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107049741_107050495_107050578_107054702_107054812_107057564
23665	chr19	-	1814	8	NIC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-33	-6	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	297.400163320159	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAATGGAGTTTGTGATC	8404	False	NA	NA	False	NA	NA	NA	43512957	43488196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_43488997_43491346_43491490_43492960_43493127_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
23666	chr19	+	3149	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	2	1	intron_retention	FALSE	canonical	3	72	junction_1	10.9361784915939	8	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACGGATTCCTGGAGTGTT	4314	False	NA	NA	False	NA	NA	NA	5074143	5081993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5080519_5081029
23667	chr3	+	2541	7	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	-13	-322	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	44.1877308260512	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAGAGAACACGTGCTC	NA	False	NA	NA	False	NA	NA	NA	58484105	58500232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115_58498465_58498709
23668	chr16	+	1934	11	NNC	ENSMUSG00000022841.16	novel	655	7	NA	NA	302	-151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1067.59667009597	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGCTGGCTAAATGTTA	1726	False	NA	NA	False	NA	NA	NA	20354600	20362655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354723_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
23669	chr2	-	3040	12	NNC	ENSMUSG00000037376.15	novel	2948	11	NA	NA	-15	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.896916493947	11	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCATAAGTCATTAATGAT	NA	False	NA	NA	False	NA	NA	NA	132657948	132646134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132646838_132646883_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657550
23670	chr19	+	3704	8	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	547	-104	intron_retention	FALSE	canonical	3	152	junction_3	42.5095427461858	1	124	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCCCAATCCTCAAAAG	NA	False	NA	NA	False	NA	NA	NA	10503314	10524913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10503425_10509144_10509364_10510183_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
23671	chr4	+	2720	17	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	-6	-246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	196.191382567507	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTTATTTTGCTTTTTC	5266	False	NA	NA	False	NA	NA	NA	108436644	108471784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436773_108445872_108445979_108447851_108447975_108450489_108450669_108452525_108452842_108454326_108454662_108456557_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
23672	chrX	-	2452	7	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	117	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	92.198457446725	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	NA	False	NA	NA	NA	12539790	12521117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_12522726_12524100_12524264_12528888_12529006_12530805_12530889_12535765_12535886_12539264_12539400_12539564
23673	chr18	-	2710	14	NNC	ENSMUSG00000044252.19	novel	3030	14	NA	NA	65	7	intron_retention	FALSE	non_canonical	0	0	junction_3	123.430357912622	474	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTCAGAATTTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	12995415	12888377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12889365_12890664_12890756_12891823_12891950_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
23675	chr11	+	3168	18	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	-38	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	59.9989619287363	1	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAGAACTGAAGCAGAGT	2809	False	NA	NA	False	NA	NA	NA	78192411	78211695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78192537_78192720_78192843_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204454_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210811_78210899_78211157_78211279_78211386
23676	chr9	+	2773	13	FSM	ENSMUSG00000034263.14	ENSMUST00000037504.7	2837	13	-7	71	-7	-71	multi-exon	FALSE	canonical	3	19	junction_1	58.8451357377991	304	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGATTGCACTTAGAAACAA	NA	False	NA	NA	False	NA	NA	NA	64868211	64893919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64868540_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
23678	chr4	-	3163	6	ISM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	12	2	12	-2	intron_retention	FALSE	canonical	3	549	junction_3	27.6086942827798	19	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATTGTCTGTGAGATAT	NA	False	NA	NA	False	NA	NA	NA	106924053	106913072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783
23680	chr11	-	3314	4	NIC	ENSMUSG00000059796.17	novel	3167	7	NA	NA	-94	59	intron_retention	FALSE	canonical	3	13166	junction_3	649.866311038064	2	140	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAATGTCACTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	69561803	69558148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558938_69559021_69561574_69561753
23681	chr13	-	1833	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	38	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2671.69357010574	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTAGTGAATCTATT	4841	False	NA	NA	False	NA	NA	NA	58550240	58539781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541574_58541884_58541963_58542237_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
23682	chr2	+	2173	3	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-9	-6	intron_retention	FALSE	canonical	3	4686	junction_2	59	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800819	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26802458_26802682_26803070_26803176
23683	chr17	+	4032	11	NNC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	10	-75	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	40.8783561313319	767	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTGGGCTGTCACTACG	8840	False	NA	NA	False	NA	NA	NA	79143005	79155662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572_79153614_79153652
23686	chr7	+	2030	3	NIC	ENSMUSG00000030432.13	novel	772	4	NA	NA	11	292	intron_retention	FALSE	canonical	3	6459	junction_1	95	133	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCGCTGCTACACAACTC	2820	False	NA	NA	False	NA	NA	NA	4795999	4798357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_4796409_4796501_4797182_4797416
23687	chr15	-	2922	16	NNC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	-794	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	94.2216299771743	4	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	89240656	89235345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558_89239614_89240068_89240347_89240530
23689	chr6	-	2518	7	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_4	1695.49950031121	2	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGTCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39397225	39374743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39376245_39376731_39376871_39377328_39377440_39378143_39378359_39382664_39382895_39387021_39387151_39397032
23690	chr12	+	4194	1	Antisense	novelGene_ENSMUSG00000061477.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTTTCCGGGTTGGCTTG	4354	False	NA	NA	False	NA	NA	NA	28679603	28683797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_28679600_28683800
23691	chrX	-	3993	5	FSM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	51	6	51	-6	multi-exon	FALSE	canonical	3	63	junction_2	3.35410196624968	56	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATCTCTTATTCTCCA	NA	False	NA	NA	False	NA	NA	NA	165293423	165282813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_165286402_165288701_165288833_165290704_165290743_165291901_165292003_165293288
23692	chr5	-	5391	48	FSM	ENSMUSG00000038564.12	ENSMUST00000041565.11	5403	48	10	2	10	1	multi-exon	TRUE	canonical	3	41	junction_37	14.3941162971073	70	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTGCATTCTTTGCTC	NA	False	NA	NA	False	NA	NA	NA	31448441	31410622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745_31411806_31411996_31412093_31412594_31412715_31412908_31413020_31413898_31414016_31414232_31414320_31414674_31414739_31414860_31414971_31415157_31415257_31417737_31417868_31417966_31418077_31418270_31418452_31418782_31418848_31419174_31419269_31420263_31420407_31420709_31420827_31420914_31421051_31421121_31421220_31421750_31421841_31422661_31422807_31422986_31423108_31423258_31423338_31423518_31423768_31423978_31424057_31424577_31424671_31424938_31425024_31428983_31429092_31429330_31429468_31433195_31433364_31434212_31434326_31437762_31437849_31438009_31438114_31438305_31438360_31438687_31438850_31439899_31439996_31440376_31440501_31441347_31441563_31442595_31442684_31442802_31442883_31443106_31443173_31443421_31443462_31443920_31444034_31444237_31444382_31448317
23693	chr5	-	3530	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	72	-1618	72	-12	multi-exon	FALSE	canonical	3	175	junction_1	2	266	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATACTTGTAAGAGACCAG	NA	False	NA	NA	False	NA	NA	NA	28414948	28405828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_28408435_28412284_28412382_28414121
23694	chr5	+	2127	5	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	14010	junction_2	1286.04053202067	13	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	121342597	121347026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121343727_121343816_121343919_121344729_121345259_121346453_121346639_121346844
23696	chr13	+	3812	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	76	4	-76	-4	multi-exon	TRUE	canonical	3	178	junction_5	19.409889274617	164	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTAGCCTTTTCCTATT	NA	False	NA	NA	False	NA	NA	NA	14129129	14173655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
23697	chr13	+	3505	14	NNC	ENSMUSG00000035493.11	novel	2714	17	NA	NA	3	-33	intron_retention	FALSE	non_canonical	0	0	junction_13	17.3228993022729	2	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCATTTGTAATAATAAAAC	9428	False	NA	NA	False	NA	NA	NA	56757401	56787138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56786514
23698	chr10	-	2284	5	NIC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-14	1	intron_retention	FALSE	canonical	3	2552	junction_2	162.853461737846	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGGTGCAATCCTAGAG	5646	False	NA	NA	False	NA	NA	NA	79875498	79871783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79874448_79875416
23699	chr16	-	1633	10	Antisense	novelGene_ENSMUSG00000065208.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGACAACAACACTGCAGTT	NA	False	NA	82	True	NA	NA	NA	22932584	22927334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_22927382_22927466_22927600_22928732_22928904_22928983_22929092_22929327_22929472_22929873_22930011_22930248_22930322_22930602_22930645_22931098_22931207_22931914
23700	chrX_GL456233v2_random	-	2564	9	Intergenic	novelGene_4786	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_5	160.006591661094	9	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTACATTGAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	134066	105713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_GL456233v2_random_-_107510_109039_109133_116592_116661_119836_119928_123267_123351_123935_124074_125547_125606_127389_127545_133984
23702	chr16	-	4170	15	NIC	ENSMUSG00000052459.14	novel	4234	15	NA	NA	29	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	123.339687738491	871	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAACTTTTCTTTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	43959639	43905769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959354
23703	chr8	-	2955	11	NIC	ENSMUSG00000019470.13	novel	4409	18	NA	NA	4	-1632	intron_retention	FALSE	canonical	3	374	junction_4	25.7184758490856	2	78	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTCTTTGAGCAGGCAC	1029	False	NA	NA	False	NA	NA	NA	3671298	3661721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3663077_3663158_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
23704	chr2	+	3044	9	NIC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	-6	0	intron_retention	FALSE	canonical	3	449	junction_3	313.397411444319	9	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	NA	False	NA	NA	NA	151336203	151353225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_151336333_151338503_151338602_151342634_151344381_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
23705	chr3	+	1886	9	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1123.46678160727	3	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTTGACTTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	89986956	90008209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90007832_90008066
23706	chr14	-	2847	6	NIC	ENSMUSG00000021814.18	novel	2851	13	NA	NA	39	354	intron_retention	FALSE	canonical	3	837	junction_4	58.7251223923799	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAATTCTGTTTAATGT	NA	False	NA	NA	False	NA	NA	NA	20514975	20506242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20506670_20508637_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676
23707	chr7	-	2018	12	NNC	ENSMUSG00000030521.12	novel	2248	11	NA	NA	-1	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	213.010572817951	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTAGTTTGTTTCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	64041985	64026328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039553_64039697_64039880_64041853
23709	chr7	-	1339	2	Genic_Genomic	ENSMUSG00000107383.2	novel	1342	1	NA	NA	6	75	multi-exon	FALSE	canonical	0	0	junction_1	0	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116425080	116423669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_116424441_116424512
23710	SIRV6	+	1410	10	FSM	SIRV6A	SIRV612	1528	10	0	118	0	17	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGATGCGGTCTTCAAAGT	NA	False	NA	NA	False	NA	NA	NA	1087	11707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
23711	chr15	+	1942	2	Genic_Genomic	ENSMUSG00000098021.3	novel	926	1	NA	NA	-1416	603	multi-exon	FALSE	canonical	0	0	junction_1	0	2	35	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAGCACTTATGGGTTG	NA	False	NA	NA	False	NA	NA	NA	39042489	39045434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_39042590_39043592
23712	chr1	+	4146	20	FSM	ENSMUSG00000033257.15	ENSMUST00000042125.15	10019	20	113	5760	41	-7	multi-exon	FALSE	canonical	3	108	junction_15	14.6750584571313	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACACTGAGAGCCATGTGT	NA	False	NA	NA	False	NA	NA	NA	74701016	74737129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74701049_74712002_74712170_74718056_74719623_74720458_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
23713	chrX	+	2366	3	NIC	ENSMUSG00000042271.14	novel	2484	4	NA	NA	-14	5	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	129.5	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGTCTTTCTTAAGGTT	NA	False	NA	NA	False	NA	NA	NA	141011208	141022693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_141011378_141019779_141019925_141020641
23715	chr4	+	2180	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	38.5115938016444	2	64	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147596801_147597356_147597440_147597596_147597930_147598133_147598384_147598714_147599384_147599639_147600031
23717	chr16	-	2273	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	10	-818	10	818	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	1361	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTTTATGCATTCCTT	NA	False	NA	NA	False	NA	NA	NA	14135229	14116289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
23718	chr8	+	3716	14	NNC	ENSMUSG00000001482.16	novel	3242	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	114.057029231695	31	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	124169734	124190009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124169791_124173586_124173893_124174055_124174349_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
23719	chr6	-	1486	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	6	-79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTTTGTTTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	87828035	87820142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820878_87820967_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
23720	chr10	-	3266	14	NIC	ENSMUSG00000006342.16	novel	3151	15	NA	NA	-24	0	intron_retention	FALSE	canonical	3	52	junction_5	9.02462115449998	159	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTCCCGTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	75479866	75472540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75473205_75473334_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
23721	chr14	+	1848	16	FSM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	45	1	-39	0	multi-exon	FALSE	canonical	3	692	junction_5	52.2695577431708	296	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	51045342	51058757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
23723	chr15	-	2145	10	ISM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	19445	3	606	-2	3prime_fragment	FALSE	canonical	3	663	junction_6	25.6341785729738	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGATGTTGGTTTTCTT	5836	False	NA	NA	False	NA	NA	NA	99530079	99518379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960
23724	chr4	+	2292	20	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	138.035223735428	21	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	148642885	148666858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660349_148666225_148666292_148666740
23725	chr12	+	2084	1	ISM	ENSMUSG00000021255.18	ENSMUST00000116402.10	4300	7	158422	6	15130	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86566312	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_86566300_86568400
23726	chr7	-	3067	8	NNC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.486449655767	93	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGGTTTCCCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	55612198	55581033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_55581639_55581743_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
23727	chr7	-	3287	11	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	3	74727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	134.783381764964	2	102	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACGGTCTCAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	42155146	42048082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42048406_42048513_42048565_42123692_42124438_42124503_42124567_42124739_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
23728	chr7	-	2884	8	NNC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	-5	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.3559853116143	184	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTTTCCCAGCCCAGTG	NA	False	NA	NA	False	NA	NA	NA	55612203	55581030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_55581643_55581742_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
23729	chr9	-	1853	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	43	2028	5	-27	multi-exon	FALSE	canonical	3	517	junction_5	114.47891605978	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCTGAAAGACACTGGCA	NA	False	NA	NA	False	NA	NA	NA	108526536	108482168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
23730	chr5	-	2609	6	NNC	ENSMUSG00000004530.13	novel	3136	9	NA	NA	9	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	383.776705911133	3	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCGTGTGCTGTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	114046757	113980497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985603_114020139_114020219_114046671
23732	chr9	-	3961	22	NNC	ENSMUSG00000032480.18	novel	4441	23	NA	NA	-277	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_21	153.476064890689	1	144	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCTGCTGTCCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	109944651	109913389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944224_109944558
23733	chrX	-	1807	11	ISM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	10	5211	10	145	5prime_fragment	FALSE	canonical	3	815	junction_3	57.6537943243981	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACCAAAAGGTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	95000509	94984151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
23735	chr8	+	2323	11	NNC	ENSMUSG00000038482.12	novel	1700	11	NA	NA	32	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	314.777635800258	3	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACAAGCTCTGTGTTTC	3058	False	NA	NA	False	NA	NA	NA	13389705	13428440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422548_13422618_13422935_13423103_13423844_13423924_13427141
23736	chr11	-	1526	12	Antisense	novelGene_ENSMUSG00000007739.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGGAGAGAAGGCGGAAG	8751	False	NA	NA	False	NA	NA	NA	22952334	22940638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22940879_22943264_22943319_22944296_22944386_22945927_22946037_22946312_22946456_22947030_22947154_22947601_22947736_22949032_22949175_22950857_22950953_22951359_22951468_22951554_22951711_22952201
23737	chr16	+	2446	19	Antisense	novelGene_ENSMUSG00000022685.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAGACAACACACACATC	6878	False	NA	NA	False	NA	NA	NA	13355823	13474843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_13356769_13358920_13359107_13384425_13384603_13420891_13420965_13424009_13424099_13425114_13425169_13443370_13443439_13443973_13444089_13446237_13446313_13447445_13447490_13449393_13449437_13458115_13458194_13465105_13465163_13466281_13466364_13468498_13468539_13469658_13469699_13470506_13470575_13472312_13472455_13474773
23738	chr15	-	1593	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5258.74321698847	4	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	163	False	NA	NA	False	NA	NA	NA	98832314	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830428_98830572_98830722_98830853_98831077_98832213
23739	chr10	+	2316	7	NNC	ENSMUSG00000019818.16	novel	2922	6	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	618.176192970544	4	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCAAAAGTGTCATATTTT	NA	False	NA	NA	False	NA	NA	NA	41395503	41407036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667_41406449_41406952
23740	chr18	+	3130	19	NNC	ENSMUSG00000041238.17	novel	781	8	NA	NA	20	124	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_8	60.0363315927207	43	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTAGTCTATAATTT	3724	False	NA	NA	False	NA	NA	NA	11790918	11876059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851940_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
23741	chr13	-	2056	17	FSM	ENSMUSG00000021494.10	ENSMUST00000224765.2	2199	17	143	0	-5	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	150	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTTCCTCTCTCACC	NA	False	NA	NA	False	NA	NA	NA	55684328	55678228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
23742	chrX	+	3229	8	NNC	ENSMUSG00000000838.18	novel	4076	16	NA	NA	2678	-6	at_least_one_novel_splicesite	FALSE	canonical	3	169	junction_5	256.674891643106	3	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAATACTAGTCTGACAG	NA	False	NA	NA	False	NA	NA	NA	67743945	67761563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755872_67756020_67756846_67756930_67759170
23743	chr14	-	904	7	ISM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-46	5833	-26	1662	5prime_fragment	FALSE	canonical	3	4955	junction_2	264.1296504034	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTTTGCGTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	36857255	36847881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
23744	chr2	-	1925	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	50	-431	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.89006308701	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTGCCTAAAGAATTTTG	NA	False	NA	NA	False	NA	NA	NA	154916317	154901660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902290_154902376_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
23745	chr11	+	3119	13	NIC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	130	junction_1	117.253287089673	59	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50268591	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
23746	chr6	-	2446	13	ISM	ENSMUSG00000053470.14	ENSMUST00000167220.4	4853	26	32130	64	599	-1	3prime_fragment	FALSE	canonical	3	336	junction_9	54.1994772422515	1	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGCTGTTCTTTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	71577540	71566021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475
23748	chr5	-	2781	19	NNC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	-14	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	66.3592914033563	383	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTCCCGGATTGTGT	NA	False	NA	NA	False	NA	NA	NA	140307321	139994457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_139995030_139995305_139995447_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
23749	chr4	-	1944	5	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-7	intron_retention	FALSE	non_canonical	0	0	junction_1	874.777793213797	5	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAACTTCTTTTTGTGT	2	True	NA	NA	False	NA	NA	NA	41098180	41092728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093586_41093781_41094000_41094265_41094385_41094700_41095272_41098001
23750	chr2	+	1675	12	NNC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	-28	-52	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	835.384832386738	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGTTATAATGTGGTGCT	5090	False	NA	NA	False	NA	NA	NA	71219575	71271914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71242206_71242330_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
23751	chr6	+	1751	6	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1022.4737453842	4	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	51447621	51460684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458729_51458799_51459459
23752	chr12	+	3952	20	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	1	-67	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	175.095336120931	1	148	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAATGTATATATTTGA	3987	False	NA	NA	False	NA	NA	NA	83679031	83729830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714867_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276_83728500_83728698
23754	chr2	-	3260	6	FSM	ENSMUSG00000039826.14	ENSMUST00000177133.8	806	6	25	-2479	2	-5	multi-exon	FALSE	canonical	3	76	junction_3	43.1879612855249	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGAAAGGCATGTGATG	NA	False	NA	NA	False	NA	NA	NA	29677658	29666126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
23755	chr9	-	1656	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	45	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5340.69375695289	6	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8181	False	NA	1	True	NA	NA	NA	78387925	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387795
23756	chr15	+	2783	11	NIC	ENSMUSG00000022471.15	novel	2114	13	NA	NA	-10	922	intron_retention	FALSE	canonical	3	579	junction_8	61.0213077539313	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCCTTTTAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	81900651	81922614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913926_81915333_81915464_81919877_81919979_81921657
23758	chr4	+	2235	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	21	1120	21	-56	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	7696	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTAAGCAGTTACTGAA	14	True	NA	NA	False	NA	NA	NA	40722500	40733844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
23759	chr11	-	3412	5	ISM	ENSMUSG00000001034.18	ENSMUST00000152755.8	3255	6	268	11	190	-11	intron_retention	FALSE	canonical	3	217	junction_3	15.1224171348366	8	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAACCTGACTCTGCGTC	NA	False	NA	NA	False	NA	NA	NA	61384824	61379648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729
23760	chr16	+	2417	14	NNC	ENSMUSG00000022808.6	novel	3161	14	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.47644481458	9	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATTTGTATTATTTTAA	9285	False	NA	NA	False	NA	NA	NA	33071815	33119932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_33071937_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
23762	chr6	+	2158	6	NIC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	28	-4	intron_retention	FALSE	canonical	3	1209	junction_4	60.5461807218259	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTACCTTTGGTTGCCTCA	2971	False	NA	NA	False	NA	NA	NA	122285985	122293744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_122286126_122289192_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
23764	chr5	+	2741	10	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	467.174009931584	1	90	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478626	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478727_111486148_111486295_111494348_111494449_111495646_111495704_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
23765	chr4	-	2803	17	NNC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	-6913	755	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	177.819782364055	2	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTAATTACTTGGTAT	9244	False	NA	NA	False	NA	NA	NA	34605664	34570040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575172_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536
23766	chrX	+	1718	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	7	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1432.40874054859	3	51	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGGAAGTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	105230775	105247295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238356_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
23767	chr9	-	3939	6	NIC	ENSMUSG00000032470.18	novel	4701	6	NA	NA	-241	-4	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	518	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATCCTGCCTTATTTCCT	2309	False	NA	NA	False	NA	NA	NA	99302446	99267476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
23769	chr11	-	3357	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_13	293.252804079674	1	125	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	95201028	95165084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95196971_95200860
23770	chr8	-	3437	6	NIC	ENSMUSG00000038515.11	novel	1416	8	NA	NA	-6	-1	intron_retention	FALSE	canonical	3	349	junction_2	27.7604034552814	12	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTAAAATTAGTGTTCTC	3695	False	NA	NA	False	NA	NA	NA	13250562	13226933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
23771	chr10	-	2919	16	NNC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	57.1380394794532	3	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	78020932	78006742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012097_78015546_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
23772	chr13	-	2898	5	Fusion	ENSMUSG00000074830.5_ENSMUSG00000114816.2	novel	894	4	NA	NA	1862	955	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	151	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATAGTCCCCAAAGACAT	NA	False	NA	NA	False	NA	NA	NA	67001073	66817036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66818090_66818418_66818879_66999024_66999460_66999535_66999959_67000546
23773	chr11	-	2960	7	FSM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	54	5	24	-5	multi-exon	FALSE	canonical	3	175	junction_5	27.9861076647365	198	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCTGCGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	61385068	61379642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61384905
23774	chrX	+	1529	9	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	7280	5	2752	-5	3prime_fragment	FALSE	canonical	3	3907	junction_8	373.621047988467	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105237985	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
23775	chr5	-	1869	9	Antisense	novelGene_ENSMUSG00000029247.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	45	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGACGCGACCCCGCTTC	NA	False	NA	NA	False	NA	NA	NA	77115352	77099458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77099681_77102285_77102405_77104392_77104588_77107158_77107339_77108954_77109135_77109237_77109352_77110271_77110356_77112286_77112368_77114658
23778	chr4	+	2382	20	NNC	ENSMUSG00000029062.15	novel	2595	20	NA	NA	8	-53	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	122.734133760856	15	62	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTTGTAAATTTGTAGA	3984	False	NA	NA	False	NA	NA	NA	155709347	155734342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714680_155718573_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
23779	chr3	-	3275	32	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	0	3	combination_of_known_junctions	TRUE	canonical	3	64	junction_8	14.4403037547212	164	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTCATTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	102843416	102725811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
23780	chr15	-	2949	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	156	junction_1	121.853737461488	548	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	NA	False	NA	NA	NA	79855324	79800007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
23781	chr15	+	1293	2	FSM	ENSMUSG00000001285.13	ENSMUST00000170281.2	741	2	12	-564	-6	564	multi-exon	FALSE	canonical	3	490	junction_1	0	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCCACCTTTGCTGAAAG	5950	False	NA	NA	False	NA	NA	NA	102240166	102241595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102240389_102240524
23782	chr15	+	1829	5	ISM	ENSMUSG00000001285.13	ENSMUST00000170078.8	1319	6	1469	0	-433	0	3prime_fragment	FALSE	canonical	3	504	junction_1	5.1720402163943	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	7425	False	NA	NA	False	NA	NA	NA	102241641	102246286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
23783	chr9	+	2382	10	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-31	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	239.830032407212	3	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824684	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77890279_77890557_77890798_77890876
23784	chr1	+	2682	3	NIC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	3	-2	intron_retention	FALSE	canonical	3	1148	junction_2	52	45	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAGAGAGCGAGTCATC	NA	False	NA	NA	False	NA	NA	NA	180720675	180726666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180720999_180721699_180722407_180725014
23787	chr1	-	3293	11	NNC	ENSMUSG00000040225.16	novel	11502	35	NA	NA	-4390	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	59.1338312643448	2	24	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTAAATAATGAGTCTTG	NA	False	NA	NA	False	NA	NA	NA	162520148	162499367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_162501226_162503173_162503411_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162509927_162520030
23788	chr4	+	2418	18	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	73	-373	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	113.977172485331	3	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTTGGAGTGTGTTTTA	-23	True	NA	NA	False	NA	NA	NA	44300948	44364302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347303_44349881_44349941_44350941_44351111_44360871_44360976_44363709
23789	chrX	-	2326	3	Antisense	novelGene_ENSMUSG00000045427.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGACGATAGACGACGAC	NA	False	NA	NA	False	NA	NA	NA	133507809	133502033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_133502081_133503438_133503511_133505602
23790	chr6	+	3032	23	NNC	ENSMUSG00000030088.16	novel	653	5	NA	NA	-485	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	46.8789543786587	40	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	90527285	90576151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90527359_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
23791	chr11	-	2355	15	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	14	5683	8	-5683	5prime_fragment	FALSE	canonical	3	534	junction_7	64.0654958234309	73	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTATTTCCTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	40624235	40597904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
23792	chr11	-	3300	28	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	447.492826650862	1	139	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTTGGTTTGCTGC	8484	False	NA	NA	False	NA	NA	NA	102771775	102729302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102729723_102729975_102730098_102730257_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735064_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
23793	chrX	+	1709	10	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	2	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1468.01824087971	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTAAAATGGAAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	105230770	105247291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238419_105241416_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
23795	chr9	+	1860	16	ISM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	78	3427	0	-103	5prime_fragment	FALSE	canonical	3	191	junction_2	18.2311089441464	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCGGGGAGCCAGGTCC	NA	False	NA	NA	False	NA	NA	NA	57038051	57046579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529
23796	chr17	-	1798	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	7	183	7	-183	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTCTTTTTAAATGTGG	NA	False	NA	NA	False	NA	NA	NA	90217870	90216072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_90216100_90217900
23797	chr5	-	2872	15	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	-21	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	233.56139122164	755	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGATTGTGGATCACTG	NA	False	NA	NA	False	NA	NA	NA	38718939	38684162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692682_38694479_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
23798	chr9	+	3401	10	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-614	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	111.253464365535	28	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGTTCCACGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	110782252	110813133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697_110812423_110812637
23799	chr12	-	1971	13	NIC	ENSMUSG00000005656.10	novel	1928	14	NA	NA	10	-4	intron_retention	FALSE	canonical	3	826	junction_12	113.659823840949	1749	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTACAGTGAAGGTCTT	NA	False	NA	NA	False	NA	NA	NA	54842462	54793137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_54793845_54798566_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
23800	chr1	-	2764	12	NIC	ENSMUSG00000026209.16	novel	1862	14	NA	NA	46	0	intron_retention	FALSE	canonical	3	848	junction_11	53.9197444631853	24	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	75293911	75285208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292715_75292973_75293088_75293184_75293274_75293353
23801	chr10	-	2545	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	57	-5	-2	0	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	182	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5255	False	NA	NA	False	NA	NA	NA	62322527	62291050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
23803	chr5	+	2120	13	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	22	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	216.948710656587	15	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTTATTTTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	64250314	64285698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269422_64285097
23805	chr12	-	3338	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	-12	14	-12	-14	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	454	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTAATGTTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	69771659	69737220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
23806	chr3	-	4338	10	FSM	ENSMUSG00000005034.16	ENSMUST00000102515.10	4347	10	4	5	4	-5	multi-exon	FALSE	canonical	3	142	junction_1	11.8415464455544	128	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGCTATTGAGTCTTCT	2702	False	NA	NA	False	NA	NA	NA	146518711	146435333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461516_146463461_146463524_146518392
23808	chr9	-	3187	28	FSM	ENSMUSG00000032422.19	ENSMUST00000165315.9	3109	28	-105	27	-98	-10	multi-exon	FALSE	canonical	3	141	junction_13	28.9754164757839	229	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAAAAAGTGGTTTAGG	NA	False	NA	NA	False	NA	NA	NA	88321109	88258829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
23809	chr6	-	999	1	Antisense	novelGene_ENSMUSG00000080242.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCTGCAAGCAGGGA	NA	False	NA	NA	False	NA	NA	NA	37784024	37783025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37783000_37784000
23810	chr15	-	4081	30	ISM	ENSMUSG00000022565.16	ENSMUST00000023226.13	15001	32	85	11978	85	3657	5prime_fragment	FALSE	canonical	2	16	junction_29	10.4608436988512	10	57	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTTCATCAGTGAGACC	1113	False	NA	NA	False	NA	NA	NA	76079825	76067153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76067209_76067290_76067396_76067561_76067646_76067722_76068080_76068166_76068306_76069510_76069690_76069808_76069967_76070053_76070238_76070340_76070468_76070559_76070715_76070810_76070964_76071836_76071963_76072178_76072275_76072372_76072478_76072663_76072826_76072907_76072986_76073070_76073381_76073456_76073612_76074301_76074396_76074658_76074787_76075048_76075145_76075216_76075337_76075441_76075549_76075619_76075736_76076380_76076548_76077420_76077514_76077609_76077688_76078540_76078631_76078950_76079013_76079623
23811	chr6	+	2683	14	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	429.104185911608	2	98	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	71808370	71852238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
23812	chrX	-	1940	14	Intergenic	novelGene_4089	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	27	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACGCATCAGGGAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	150844961	150819095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150819245_150819336_150819473_150820363_150820480_150820583_150820693_150824321_150824462_150829652_150829802_150829890_150830045_150830853_150830963_150841772_150841931_150842352_150842504_150842617_150842775_150843975_150844040_150844286_150844399_150844725
23813	chr4	-	2576	6	NNC	ENSMUSG00000028879.5	novel	2934	9	NA	NA	66	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	89.3272634753802	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAACCTATTCCTAGAA	6159	False	NA	NA	False	NA	NA	NA	132611754	132580831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587967_132598894_132598969_132611558
23814	chr5	+	3488	12	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-6	553	intron_retention	FALSE	canonical	2	8	junction_9	294.644343669106	10	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTTGTGGTAAGCTT	NA	False	NA	NA	False	NA	NA	NA	31652104	31668756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663584_31664817_31664909_31666642_31666751_31668175
23815	chr4	-	1952	11	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	51	-240	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	482.38272149819	7	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCAGGGTTGCCAAGCTG	NA	False	NA	NA	False	NA	NA	NA	137523644	137469283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481213_137482962_137483061_137485882_137486044_137523552
23816	chr13	+	4093	4	NNC	ENSMUSG00000000078.8	novel	4225	4	NA	NA	12	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	92.6390846241477	123	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCTTATCAGCATCTGG	NA	False	NA	NA	False	NA	NA	NA	5911492	5920378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_5911733_5914762_5915344_5916637_5916762_5917230
23818	chr17	-	3694	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	0	-1042	intron_retention	FALSE	non_canonical	0	0	junction_7	348.793540068835	1	168	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCCCAATATTACTGTG	8737	False	NA	NA	False	NA	NA	NA	24470321	24442213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24454509_24454624_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461304_24462252_24462321_24463459_24463561_24468224_24468380_24470268
23819	chr6	+	2481	16	NNC	ENSMUSG00000029916.12	novel	836	8	NA	NA	38	-4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	147.303526396651	696	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATCCAGTGTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	40302479	40373692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40302793_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
23820	chr5	+	1266	7	NNC	ENSMUSG00000067274.11	novel	694	3	NA	NA	-2147	-116	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	8177.45098154404	21	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCCTAGTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	115695378	115701670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115695476_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
23821	chr10	+	2275	4	FSM	ENSMUSG00000009291.14	ENSMUST00000162895.8	773	4	-7	-1495	-7	-5	multi-exon	FALSE	canonical	3	637	junction_2	19.2930615046504	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTGATTTCTTTGT	8958	False	NA	NA	False	NA	NA	NA	77425220	77434561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77425577_77428679_77428852_77429697_77429745_77432861
23822	chr12	+	1690	8	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-162	-1689	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	1574.88719388704	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908430	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908767_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
23823	chr5	+	3660	7	NNC	ENSMUSG00000029177.10	novel	1007	7	NA	NA	-9	4	intron_retention	FALSE	non_canonical	0	0	junction_1	851.434753160152	4	48	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCGCTTGAATCTGTTG	9215	False	NA	NA	False	NA	NA	NA	30824269	30831726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30825491_30825654_30826251_30826592_30827755_30829807_30829915_30830325_30830404_30830636_30830788_30831381
23825	chr11	+	1848	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-3	167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1868.42330137902	2	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGGTTTTAAACTCCAT	NA	False	NA	NA	False	NA	NA	NA	22940635	22953318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952821_22952933_22953190
23827	chr4	+	2795	12	NIC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	0	-8	combination_of_known_junctions	FALSE	canonical	3	26	junction_4	127.345498676074	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTAAACTCTTGCACCTT	-11	True	NA	NA	False	NA	NA	NA	21848047	21875248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860877_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
23829	chr5	-	735	6	ISM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	152	21733	-130	-1585	5prime_fragment	FALSE	canonical	3	180	junction_2	23.4179418395383	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAAAGACATGAGATGTG	NA	False	NA	NA	False	NA	NA	NA	9047172	9037765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
23831	chr18	+	3360	13	ISM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	42787	-336	-6002	336	3prime_fragment	FALSE	canonical	3	282	junction_1	33.8685161896545	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTTTGGAGTAGACAAAAT	NA	False	NA	NA	False	NA	NA	NA	34952886	34972049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
23834	chr5	+	1645	8	NNC	ENSMUSG00000029304.15	novel	1456	7	NA	NA	-801	-1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	2607.58167735579	11	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTAAGGAGTCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	104582182	104588908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104582252_104582861_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
23835	chr10	-	1187	6	NNC	ENSMUSG00000019813.17	novel	759	7	NA	NA	-5589	-484	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	67.1553423042426	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTCTTTCCCTTCTCTTT	5923	False	NA	NA	False	NA	NA	NA	41628223	41605003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
23836	chr10	-	1710	5	ISM	ENSMUSG00000019813.17	ENSMUST00000190022.7	1949	10	80676	1	-6020	-1	3prime_fragment	FALSE	canonical	3	114	junction_4	44.9165893629514	11	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAGCCTGTGGAAATAT	1526	False	NA	NA	False	NA	NA	NA	41604927	41594842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623
23837	chr10	+	2341	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	279.30004009433	1	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTTGCATAAATTGTGT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872205_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
23840	chr17	+	3588	3	NNC	ENSMUSG00000034681.18	novel	548	2	NA	NA	255	-2	intron_retention	FALSE	non_canonical	0	0	junction_2	657.5	6	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATTGAGTGCTGGTTTT	34	False	NA	NA	False	NA	NA	NA	24640808	24644867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24640826_24641123_24641903_24642075
23841	chr11	-	3979	16	NIC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	-17	-4	intron_retention	FALSE	canonical	3	358	junction_10	42.3979035121104	5	107	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTTGGCATCTTTCAAT	3522	False	NA	NA	False	NA	NA	NA	115494736	115475084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
23842	chr4	+	2222	10	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.314269680527354	1	61	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGAATAAAGCACTCACT	NA	False	NA	NA	False	NA	NA	NA	135048176	135065390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054535_135056314_135056356_135056682_135056831_135059031_135059122_135059471_135059550_135065114
23843	chr3	+	2503	12	NNC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	12	-305	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	65.3540895797148	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCACTTTAAAAGCCACCA	NA	False	NA	NA	False	NA	NA	NA	57643517	57742235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_57643622_57655311_57655456_57671677_57671804_57671987_57672121_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
23844	chr3	+	2824	8	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	0	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	792.757007833666	1	120	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGCGTTATTAATAATG	NA	False	NA	NA	False	NA	NA	NA	95836589	95854681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841227_95841371_95842087_95842170_95844447_95844508_95845193_95845352_95851618_95851674_95852491_95854400_95854636
23845	chr7	-	2562	11	FSM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	-313	-1	-313	1	multi-exon	FALSE	canonical	3	635	junction_4	61.7421250039226	1304	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACGGGCTTATTTCATCT	NA	False	NA	NA	False	NA	NA	NA	64042329	64026273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
23846	chr2	+	2416	3	NIC	ENSMUSG00000001403.14	novel	967	6	NA	NA	26	0	intron_retention	FALSE	canonical	3	1606	junction_1	13	31	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	NA	NA	NA	164611848	164614827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164612001_164612286_164614147_164614423
23847	chr17	+	2922	13	NIC	ENSMUSG00000002833.12	novel	2238	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	635	junction_12	78.0581602965948	17	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAACAGCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	56386698	56407596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
23848	chr2	-	3047	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	22	291	12	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	49	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	22930185	22830375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
23850	chr11	-	1314	2	FSM	ENSMUSG00000001054.10	ENSMUST00000132854.2	494	2	-116	-704	27	704	multi-exon	FALSE	canonical	3	295	junction_1	0	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTATGATTAAAGGTGTA	NA	False	NA	NA	False	NA	NA	NA	51526696	51519454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_51520489_51526416
23851	chr11	-	1735	7	NIC	ENSMUSG00000001054.10	novel	1946	10	NA	NA	-2391	-9	intron_retention	FALSE	canonical	3	245	junction_2	13.0469238605206	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCCTTACCAATGATTG	NA	False	NA	NA	False	NA	NA	NA	51519052	51514508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_51514974_51515055_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706
23852	chr1	+	2528	13	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-11	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	148.544863219463	1	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAATGGATTTGTACAAT	NA	False	NA	NA	False	NA	NA	NA	132405132	132432619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132412463_132412540_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424591_132424767_132425667_132425746_132431501
23853	chr14	+	475	4	NIC	ENSMUSG00000010406.13	novel	418	5	NA	NA	1	-11	intron_retention	FALSE	canonical	3	1056	junction_1	226.233409459248	656	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGCCCCACTTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	54664366	54667192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_54664418_54664490_54664696_54666040_54666106_54667038
23854	chr13	+	2889	3	Antisense	novelGene_ENSMUSG00000021678.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	182	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTTCCTGGGGCGGGAC	NA	False	NA	NA	False	NA	NA	NA	95648231	95661733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_95650792_95652179_95652320_95661544
23855	chr17	+	1855	5	NNC	ENSMUSG00000046711.17	novel	1045	6	NA	NA	-882	-1	at_least_one_novel_splicesite	FALSE	canonical	2	97	junction_1	2197.31500927837	11	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGACAGTCTCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	27774588	27782636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27774913_27778506_27778678_27779901_27779986_27780434_27780486_27781411
23856	chr5	-	2490	12	FSM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	60	0	60	0	multi-exon	FALSE	canonical	3	385	junction_10	43.2746370854342	610	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	NA	False	NA	NA	NA	65593232	65570563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
23857	chr1	+	1988	7	NNC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_3	2094.08426021707	859	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGTGAAGTGTGCATTT	NA	False	NA	NA	False	NA	NA	NA	160862736	160866106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863375_160863552_160863585_160863777_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
23858	chr7	-	4088	23	FSM	ENSMUSG00000063550.9	ENSMUST00000070165.7	4052	23	-32	-4	-2	4	multi-exon	FALSE	canonical	3	19	junction_13	31.0306766371922	72	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCTCAGGAAAATCCATTC	9994	False	NA	NA	False	NA	NA	NA	101859359	101783405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
23860	chr7	+	2373	19	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-6015	61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	151.862510917679	1	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATTTCTGCATTAAAACC	4621	False	NA	NA	False	NA	NA	NA	97144970	97190530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97145050_97148755_97148807_97150176_97150264_97150934_97151056_97155270_97155343_97156922_97157065_97158836_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
23861	chr4	+	4092	21	NNC	ENSMUSG00000028309.15	novel	4154	21	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	22.0668869576114	25	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCTTGTGTTTGTGGTG	-4	True	NA	NA	False	NA	NA	NA	49632074	49656883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638673_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
23862	chr11	-	2785	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	29	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	215.207795076592	1	51	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7798	False	NA	NA	False	NA	NA	NA	113456553	113135679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354740_113354922_113414287_113414451_113450336_113450376_113452831_113452951_113456411
23863	chr9	+	2719	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	-113	0	-38	0	multi-exon	TRUE	canonical	3	165	junction_10	72.0150887688172	303	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	NA	False	NA	NA	NA	99125381	99182457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
23864	chr8	+	2208	19	NNC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	2	-1100	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	256.014660074066	1	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1908	False	NA	NA	False	NA	NA	NA	106937656	106978326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963520_106963594_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
23865	chrX	-	2483	11	NNC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	-18	-8	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	87.4914852999993	1	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGAAGCTGCGTTTATT	NA	False	NA	NA	False	NA	NA	NA	36373993	36355338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373638
23866	chr3	+	2971	14	FSM	ENSMUSG00000028060.15	ENSMUST00000198042.5	2567	14	-35	-369	-11	7	multi-exon	FALSE	canonical	3	104	junction_11	80.4603618093109	232	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGCATTGTTGTTTTTT	-3	True	NA	NA	False	NA	NA	NA	88593098	88620238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617164_88617250_88618067_88618160_88618936
23867	chr17	+	5037	30	NIC	ENSMUSG00000024169.17	novel	6942	29	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	15.5658243289342	41	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAAAAGGCTGTAC	6867	False	NA	NA	False	NA	NA	NA	25235048	25318461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25235111_25237734_25237913_25239491_25239714_25244523_25244646_25244777_25244921_25247777_25247954_25251058_25251151_25252056_25252164_25252859_25253006_25254676_25254881_25255244_25255318_25255931_25256024_25264022_25264151_25264478_25264597_25267373_25267505_25269247_25269417_25270745_25270878_25274531_25274732_25305816_25305995_25306846_25307038_25307502_25307599_25307773_25307907_25308372_25308517_25309615_25309745_25309867_25310051_25311262_25311470_25311741_25311955_25312036_25312204_25313613_25313756_25317702
23869	chr6	+	3751	8	NIC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-2	1	intron_retention	FALSE	canonical	3	210	junction_1	897.999795463819	43	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTGCTTCCTCTCACGA	NA	False	NA	NA	False	NA	NA	NA	86986215	87005442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86986372_86986731_86986942_86989888_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
23870	chr1	+	3189	24	NNC	ENSMUSG00000026229.18	novel	3112	25	NA	NA	25	138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	327.615357250295	1	161	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCAGACTTTAGTTGAT	NA	False	NA	NA	False	NA	NA	NA	85992387	86067011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85992556_85999333_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
23873	chr11	+	3420	19	NIC	ENSMUSG00000025579.15	novel	3363	20	NA	NA	10	-5	intron_retention	FALSE	canonical	3	38	junction_1	103.544124905613	1	88	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGTTCTCACGTCACC	NA	False	NA	NA	False	NA	NA	NA	119158863	119176275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
23874	chr13	-	1592	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	223.451709921107	97	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312430_34312886_34312966_34313228_34313338_34314159
23875	chr12	+	4729	12	FSM	ENSMUSG00000020589.18	ENSMUST00000069005.10	1771	12	-4	-2954	4	2954	multi-exon	FALSE	canonical	3	60	junction_1	14.2718586881045	142	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACAGTTTAAAATCATGT	NA	False	NA	NA	False	NA	NA	NA	12312173	12426350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_12312240_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
23876	chr8	-	2587	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	311	11	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	79.0283770236995	413	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGTTATTTTTACCTAG	NA	False	NA	NA	False	NA	NA	NA	22675524	22658164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675405
23877	chr7	+	2552	3	Intergenic	novelGene_2940	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	98	2	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGACATTTTTAAGTCATC	NA	False	NA	NA	False	NA	NA	NA	42903168	42915078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903292_42910431_42910493_42912710
23878	chr9	-	3219	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	30	10	-27	-10	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	518	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGGTAATTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	31043119	31000707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
23879	chr5	-	1498	6	Antisense	novelGene_ENSMUSG00000029247.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTATAACAAGGCCAGCAAA	NA	False	NA	NA	False	NA	NA	NA	77115352	77109036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77109135_77109237_77109358_77110275_77110356_77112286_77112468_77114091_77114252_77114493
23880	chr2	-	4741	9	NNC	ENSMUSG00000026860.17	novel	1851	13	NA	NA	0	-58	intron_retention	FALSE	canonical	3	34	junction_2	133.588395360525	1	109	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGGCCCCAGGCCCCTC	NA	False	NA	NA	False	NA	NA	NA	30249257	30235210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30235440_30235710_30235952_30236070_30236466_30236622_30236713_30237092_30240393_30240595_30240730_30244864_30244994_30245294_30245415_30249154
23882	chr14	-	2964	22	NNC	ENSMUSG00000025557.11	novel	3121	23	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9.85771794963739	6	44	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATATGTGTTTGTGTGTCT	3133	False	NA	NA	False	NA	NA	NA	121742669	121697030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_121698186_121699878_121699957_121703283_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
23883	chr2	+	3698	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	25	4577	25	2179	multi-exon	FALSE	canonical	3	345	junction_2	41.5	595	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAGTTTTCTATAAAA	NA	False	NA	NA	False	NA	NA	NA	119424808	119433406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119424916_119426739_119426993_119430068
23884	chr15	+	3384	24	NNC	ENSMUSG00000023007.16	novel	2619	25	NA	NA	7	0	intron_retention	FALSE	canonical	3	47	junction_23	37.8112414646281	1	57	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCTACAACTCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	99193131	99214888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213451_99213603_99213782_99213967_99214262_99214345
23885	chr3	+	4113	15	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	-26	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_5	217.542583211205	2	187	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTCATGAGTGTTTAAA	NA	False	NA	NA	False	NA	NA	NA	157742336	157774098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754197_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
23886	chr6	+	1963	11	FSM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	127	937	-26	46	multi-exon	FALSE	canonical	3	404	junction_1	54.9894535342915	1196	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGTTGTTAAGTCAAGA	NA	False	NA	NA	False	NA	NA	NA	72575584	72584471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
23888	chr7	-	2137	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	9	69	9	-63	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	8	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAATAAAACTTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	99002437	98994664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
23889	chr10	-	2255	12	NIC	ENSMUSG00000020166.16	novel	2693	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_10	195.151138715993	34	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417393	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116384937_116385081_116417357
23890	chr1	+	1952	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	526.71122475766	2	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724139	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735230_59737498_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
23892	chr7	-	1900	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	621.456675883364	61	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCTTTCTAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	99002321	98994595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995252_98995441_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
23893	chr2	+	2638	12	NNC	ENSMUSG00000027247.17	novel	3201	14	NA	NA	12	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	104.751102086946	2	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAAAACCCATTTG	NA	False	NA	NA	False	NA	NA	NA	91482103	91502658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_91482169_91484417_91484553_91484780_91484810_91498548_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
23894	chr1	-	2251	10	NIC	ENSMUSG00000006299.14	novel	1817	11	NA	NA	-25	0	intron_retention	FALSE	canonical	3	1233	junction_7	53.416601664027	2084	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	74323864	74319004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
23895	chr5	+	5080	25	Antisense	novelGene_ENSMUSG00000066621.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	76	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGCGGGCCGGAAGCAAT	NA	False	NA	NA	False	NA	NA	NA	144131262	144160404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_144132835_144132948_144133068_144133167_144133276_144134708_144134806_144135375_144135508_144135945_144136130_144136549_144136605_144137632_144137711_144137827_144137929_144140227_144140328_144141441_144141569_144142980_144143150_144143238_144143387_144144213_144144370_144145414_144145558_144146676_144147184_144148222_144148367_144149388_144149491_144150871_144150974_144151061_144151234_144153064_144153195_144153718_144153842_144154042_144154227_144155331_144155569_144160314
23896	chr3	+	1774	15	ISM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	321	7326	51	5	3prime_fragment	FALSE	canonical	3	839	junction_2	63.0632982949412	42	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	69629638	69656380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
23897	chr6	-	2261	16	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-2	-33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	330.809404676201	1	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTTTTTAATATTAAAAG	42	False	NA	NA	False	NA	NA	NA	30509705	30482446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30485202_30485276_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
23898	chr2	+	2454	6	NIC	ENSMUSG00000014077.14	novel	2609	7	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	74.6886872290576	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTGGTTGAGTTTTACC	NA	False	NA	NA	False	NA	NA	NA	119378201	119417505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_119378399_119391211_119391285_119397130_119397212_119411175_119411238_119415010_119415134_119415587
23900	chr15	-	3197	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	-80	1	-6	-1	multi-exon	FALSE	canonical	3	163	junction_7	20.0690167197789	415	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTGAGCTGCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	9140532	9112073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
23903	chr1	+	2088	9	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	42	-251	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	286.019202808133	17	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAACGCTGTGTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	167177601	167195850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167179927_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167195333
23904	chr16	+	3160	19	NIC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	7	-17	intron_retention	FALSE	canonical	3	293	junction_13	18.4588297316414	5	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATCCCCTCCTGGATCT	NA	False	NA	NA	False	NA	NA	NA	20367400	20379551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20378483_20378664_20378798_20378932_20379021_20379106
23906	chr7	-	3246	7	Fusion	ENSMUSG00000010751.16_ENSMUSG00000037613.17	novel	1476	6	NA	NA	36	3	multi-exon	TRUE	non_canonical	0	0	junction_1	24.8378072032671	271	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTTGAATTGGCTCAT	3144	False	NA	NA	False	NA	NA	NA	143239572	143188539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_143188626_143219629_143222330_143223718_143223793_143224568_143224681_143233681_143233811_143235196_143235288_143239518
23907	chr4	+	1557	1	Antisense	novelGene_ENSMUSG00000025413.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTATGACTCCAAGTTTA	NA	False	NA	NA	False	NA	NA	NA	106519343	106520900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_106519300_106520900
23908	chr2	+	2192	17	NIC	ENSMUSG00000026790.20	novel	403	5	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	3	114	junction_1	291.410980189491	14	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTGTTGCACAAAGTG	6640	False	NA	NA	False	NA	NA	NA	29779243	29812552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779291_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
23909	chr9	-	3589	20	NNC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	104.703776848911	1	127	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGTGAATAAATTTTGT	7545	False	NA	NA	False	NA	NA	NA	107749988	107650771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107724477_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
23911	chr9	+	2488	1	FSM	ENSMUSG00000009927.10	ENSMUST00000213116.2	1116	1	37	-1409	0	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	48	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCAAATGAATGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	44318993	44321481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44319000_44321500
23913	chr11	-	2636	7	ISM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	4564	-1	-286	1	3prime_fragment	FALSE	canonical	3	69	junction_1	17.2787602435926	16	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTGTTAATTTTGAC	5897	False	NA	NA	False	NA	NA	NA	61153447	61135677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044
23914	chr10	+	1842	9	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	-7	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1241.50442382418	17	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTACATTTTCACTCCTG	896	False	NA	NA	False	NA	NA	NA	127894872	127913119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127895012_127895097_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
23916	chr15	-	959	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	146	638	19	-638	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGCCTGCTTTGAGCCAG	177	False	NA	NA	False	NA	NA	NA	98832300	98829943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
23918	chr17	+	2626	11	NNC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	136.387132824178	7	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAATATTGCTGTGACTC	NA	False	NA	NA	False	NA	NA	NA	26780503	26875902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040_26874380_26874463
23919	chr9	-	3333	7	FSM	ENSMUSG00000040722.8	ENSMUST00000214256.2	1025	7	7	-2315	5	-4	multi-exon	FALSE	canonical	3	62	junction_6	45.7262385167301	246	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTCCCTCTGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	57375336	57348613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375098
23921	chr19	-	1591	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	56	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.93458700951	22	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902367	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15882638_15883155_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
23922	SIRV6	+	1469	11	NNC	SIRV6A	novel	1528	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9148.42914603376	4	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205_11582_11640
23923	chr18	+	1671	7	FSM	ENSMUSG00000036743.5	ENSMUST00000040860.3	1692	7	20	1	-18	-1	multi-exon	TRUE	canonical	3	86	junction_2	7.18795288428261	318	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATAGAGTGTCTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	14839227	14895354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
23924	chr9	-	3164	5	Antisense	novelGene_ENSMUSG00000047412.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	258	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCTCTTCTATTGATGCT	NA	False	NA	NA	False	NA	NA	NA	30981846	30964584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_30965608_30973334_30973420_30975472_30975637_30977952_30978037_30980038
23925	chr14	+	3294	1	ISM	ENSMUSG00000021770.12	ENSMUST00000119430.3	6801	6	43877	4	3557	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	73	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGGCTTGTTATAAC	7065	False	NA	NA	False	NA	NA	NA	21845496	21848790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_21845500_21848800
23926	chr18	-	1573	14	NNC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	-3	-429	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	1385.58704795318	1	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTCCTTACTACTGGTAT	NA	False	NA	NA	False	NA	NA	NA	64649582	64634402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649482
23927	chr2	-	2842	9	NIC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	1	-1	intron_retention	FALSE	canonical	3	11	junction_5	127.702779922757	3	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCTCTCTAGACCCTGA	NA	False	NA	NA	False	NA	NA	NA	30068461	30063483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066015_30066373_30066505_30066626_30066677_30066750_30067734_30067931
23929	chr17	-	5519	9	Antisense	novelGene_ENSMUSG00000048249.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCGCGGCGAGGAGGAGGA	NA	False	NA	NA	False	NA	NA	NA	26993650	26934609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_26934747_26955760_26955956_26958514_26958640_26961010_26962104_26976776_26976973_26978732_26978922_26981209_26981285_26982298_26982422_26990264
23930	chr13	-	2487	10	NNC	ENSMUSG00000021377.16	novel	2556	11	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	490.167318372002	272	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	NA	False	NA	NA	NA	47259292	47238257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259077
23931	chr19	-	4156	31	FSM	ENSMUSG00000024960.10	ENSMUST00000025912.10	4257	31	98	3	-8	-2	multi-exon	FALSE	canonical	3	577	junction_24	50.7714377272191	183	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCCTGTGTACAGTGTAG	4409	False	NA	NA	False	NA	NA	NA	6947084	6931083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
23932	chr18	+	3201	19	NIC	ENSMUSG00000041238.17	novel	781	8	NA	NA	0	124	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	44.3982051133146	132	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTAGTCTATAATTT	3704	False	NA	NA	False	NA	NA	NA	11790898	11876059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_11791031_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
23933	chr1	-	2608	17	NIC	ENSMUSG00000026193.16	novel	7410	44	NA	NA	12	2157	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	419.235832907625	1	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACGGCCAACTCCGTCA	NA	False	NA	NA	False	NA	NA	NA	71692308	71666458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71689720_71689859_71690679_71690809_71691990
23936	chr11	-	2371	12	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	32	-3	intron_retention	FALSE	canonical	3	831	junction_11	110.238659205703	103	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCGTGGCTGGCAGTC	NA	False	NA	NA	False	NA	NA	NA	96807290	96798644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
23938	chr14	-	1604	2	Genic_Genomic	ENSMUSG00000057886.6	novel	552	1	NA	NA	-75	1086	multi-exon	FALSE	canonical	0	0	junction_1	0	9	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74193066	74191353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_74192781_74192889
23939	chr12	+	3747	6	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9695	2110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	33.4687914332143	464	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAACGGCAGTCTCAATA	659	False	NA	NA	False	NA	NA	NA	104343727	104362626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991_104360564_104360729
23940	chr4	-	3271	10	NNC	ENSMUSG00000028436.9	novel	3442	9	NA	NA	62	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	175.720808298664	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAGCTGTTTGAGTGAC	9	True	NA	NA	False	NA	NA	NA	41314827	41291305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487_41314594_41314696
23941	chr17	-	1627	8	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	3	122899	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1129.49013239766	2	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCATCAGCAAAGCACGATG	NA	False	NA	NA	False	NA	NA	NA	47093595	46961933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46961942_47085835_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091476_47092708_47092818_47093544
23942	chr15	+	2990	5	FSM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	23	-241	23	241	multi-exon	FALSE	canonical	3	69	junction_1	13.4976849866931	384	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATCCCAGATCCCAGATG	NA	False	NA	NA	False	NA	NA	NA	76763481	76776836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772548_76774206
23944	chr12	-	7520	35	NIC	ENSMUSG00000035181.7	novel	7763	36	NA	NA	4	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_33	14.1477925699409	95	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTTTTTGTATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	52018076	51922656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529_51944712_51945837_51946075_51952103_51952284_51956740_51956877_51961756_51961927_51962849_51963040_51965366_51965524_51967172_51967361_51968120_51968227_51971780_51971957_51972036_51972201_51976973_51977084_51984853_51984954_51986353_51986507_51992203_51992316_51994537_51994789_51996714_51996871_51997711_51997968_51999269_51999428_52002162_52002338_52002903_52003054_52003861_52003971_52008215_52008428_52017985
23945	chr5	+	2768	18	NNC	ENSMUSG00000056310.15	novel	3044	16	NA	NA	-5751	-413	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	113.928314740691	569	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGAGCTACTGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	130278708	130369991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130278716_130285891_130286035_130287773_130287896_130291659_130291783_130295488_130295635_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
23946	chrX	-	3489	6	NIC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	-3	-167	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	99.5630453531831	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTTGTGTGAATAT	NA	False	NA	NA	False	NA	NA	NA	156381678	156349109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_156351813_156351929_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156381491
23947	chr14	-	2715	8	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-114	intron_retention	FALSE	canonical	3	2964	junction_2	189.440098765832	6	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTCCTGAGACTTATTCT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63730296_63731190_63731461_63731805_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
23948	chr15	-	1550	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4701.41214822738	5	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	160	False	NA	NA	False	NA	NA	NA	98832317	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830444_98830572_98830722_98830853_98830964_98831025_98831077_98832213
23949	chr11	+	2127	11	FSM	ENSMUSG00000018932.10	ENSMUST00000130269.2	2096	11	-37	6	-4	-6	multi-exon	FALSE	canonical	2	10	junction_6	128.562980674843	1165	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATCGTGTGAGACT	NA	False	NA	NA	False	NA	NA	NA	60822854	60843614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
23950	chr8	-	2731	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-22	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	195.288177374418	45	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTGTGACTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	40964367	40945581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964035
23951	chr2	-	4099	1	Genic_Genomic	ENSMUSG00000017767.4	novel	NA	NA	NA	NA	1300	3259	mono-exon	FALSE	NA	NA	NA	NA	NA	6	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGTGGAAGCTGAATGCA	4965	False	NA	NA	False	NA	NA	NA	164669148	164665049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_164665000_164669100
23952	chr16	+	1622	9	ISM	ENSMUSG00000022945.13	ENSMUST00000117099.8	1894	14	7269	-17	-1548	-16	3prime_fragment	FALSE	canonical	3	863	junction_2	32.6879182573623	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTGGTTCACATAGAAAA	4841	False	NA	NA	False	NA	NA	NA	93688080	93702982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
23953	chr19	+	2065	6	Antisense	novelGene_ENSMUSG00000025024.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCCTCGGAAGGCGGAG	NA	False	NA	NA	False	NA	NA	NA	53367825	53379125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_53369031_53369669_53369825_53371987_53372152_53372885_53373027_53377732_53377854_53378846
23955	chr17	-	2564	21	NNC	ENSMUSG00000040688.17	novel	5226	22	NA	NA	8	-201	intron_retention	FALSE	canonical	1	8	junction_19	128.957153737201	99	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTAACTTGGTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	24926597	24919632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924823_24924908_24924996_24925088_24925141_24926497
23956	chr15	+	1612	12	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	5220.66311452596	238	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	103148858	103153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682_103152982_103153289
23957	chr14	-	3878	13	Fusion	ENSMUSG00000076270.3_ENSMUSG00000114797.2	novel	3080	6	NA	NA	21	7	multi-exon	FALSE	canonical	1	1	junction_1	68.7432825001024	53	25	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACATTGTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	60488834	60461429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_60463793_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
23958	chr10	-	2359	14	NIC	ENSMUSG00000020076.8	novel	2535	15	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	2	8	junction_6	72.4032102331865	4	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTGTGTTAAGAGTTTT	8118	False	NA	NA	False	NA	NA	NA	62486985	62451795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
23959	chr14	-	2508	10	NNC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-94	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	203.869663035413	4	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATTTTGGTGATAAATT	NA	False	NA	NA	False	NA	NA	NA	40688858	40628405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40629659_40629715_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
23960	chr15	-	1814	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	11	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	447.556175929061	2	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTTCCTTCGTCCTGTG	2772	False	NA	NA	False	NA	NA	NA	77854986	77843205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843273_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
23961	chr5	-	4263	17	NIC	ENSMUSG00000036553.17	novel	4246	18	NA	NA	-90	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_15	23.5478236786332	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTATCTTCTAGGTGT	NA	False	NA	NA	False	NA	NA	NA	35897421	35854524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35881257_35881489_35897301
23962	chr3	-	1823	13	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-22	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	270.910335207467	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATTTTTCTCTGACTCTC	8	True	NA	NA	False	NA	NA	NA	153650126	153627997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628640_153631301_153631332_153631408_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
23966	chr4	+	2994	16	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	94.5965937841081	206	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTCTTGTGTGTAT	-25	True	NA	NA	False	NA	NA	NA	11558921	11615799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633_11578714_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
23967	chr4	-	3446	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	29	0	29	0	multi-exon	FALSE	canonical	3	666	junction_4	59.9637750728526	461	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTAATGGGATGTT	NA	False	NA	NA	False	NA	NA	NA	132237783	132219342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
23968	chr12	+	5015	8	NNC	ENSMUSG00000048833.10	novel	5201	7	NA	NA	58	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	36.3744696293475	77	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTATGTGAGTGGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	80691071	80730111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80691191_80691317_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
23969	chr5	-	2291	13	NNC	ENSMUSG00000029012.12	novel	2117	13	NA	NA	0	0	intron_retention	FALSE	canonical	1	1	junction_5	167.777796173656	280	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTCTTTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	22755373	22691482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729710_22729867_22731360_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
23970	chr8	+	2871	24	NNC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	191.411758383954	1	78	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTGTTGCAAAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	108163051	108283845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108163074_108179610_108179696_108184083_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244529_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
23971	chr11	+	4322	26	NIC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_17	128.416858706324	13	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTTTATATCTTAGGA	NA	False	NA	NA	False	NA	NA	NA	29080745	29111680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
23973	chr3	-	4103	16	NNC	ENSMUSG00000027889.18	novel	3650	18	NA	NA	4	0	intron_retention	FALSE	non_canonical	0	0	junction_8	63.1922639428453	1	98	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993963	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107982438_107982564_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985993_107986126_107986302_107986393_107986500_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
23974	chr2	-	2644	13	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-15	266	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	304.111399088485	15	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTAGCCAGAGCCAAGGC	NA	False	NA	NA	False	NA	NA	NA	5017541	5003565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5004056_5004118_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5013951_5014064_5015499_5015587_5017515
23975	chr2	-	4800	18	NNC	ENSMUSG00000025815.14	novel	3852	18	NA	NA	-12	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.4538401405885	6	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTTGAAAGAACCATTTT	NA	False	NA	NA	False	NA	NA	NA	5947566	5900911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5902336_5902992_5903624_5904721_5904808_5907139_5907310_5907778_5907862_5908770_5908936_5915112_5915220_5916624_5916776_5918322_5918463_5919620_5919706_5922483_5922797_5924250_5924450_5926475_5926648_5928679_5928950_5934448_5934644_5935585_5935798_5937197_5937354_5947325
23976	chr14	-	1681	14	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	253.510243948804	88	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30740992	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30739081_30739125_30739232_30739371_30739764_30739824_30740885
23977	chr19	+	625	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	41	140	-5	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	10690	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGTGGGATGAAGTGCAG	NA	False	NA	NA	False	NA	NA	NA	8866257	8868105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
23978	chr4	+	2507	20	NNC	ENSMUSG00000029062.15	novel	2595	20	NA	NA	9	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	122.734133760856	69	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAAGTGTCTAACTTGC	3985	False	NA	NA	False	NA	NA	NA	155709348	155734388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718603_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
23979	chr19	-	1816	12	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1305.30447985287	10	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3777	False	NA	NA	False	NA	NA	NA	7017321	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003707_7006475_7006603_7009848_7010018_7011530_7011669_7012014_7012157_7012863_7013074_7017247
23981	chr11	-	3235	16	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	106.915459852893	6	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3548	False	NA	NA	False	NA	NA	NA	115494710	115475080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115478439_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
23983	chr9	+	3233	19	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	18	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	764.751434240459	1	110	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTCTCAGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	21279184	21316659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299819_21300050_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307524_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314687_21315355_21315488_21315991
23984	chr5	-	2328	12	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_7	199.263561501216	1380	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4340	False	NA	NA	False	NA	NA	NA	123887458	123866488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
23985	chr15	-	1614	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	2	0	-2	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	5	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	158	False	NA	NA	False	NA	NA	NA	98832319	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
23986	chr8	+	2914	15	NNC	ENSMUSG00000031889.10	novel	2916	16	NA	NA	11	0	intron_retention	FALSE	canonical	0	0	junction_12	70.8753216887923	1	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	105951848	105979685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976246_105976288_105977350_105977424_105978229
23987	chr8	-	2692	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	186.712271214889	481	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTATATGGTTGTGACTG	NA	False	NA	NA	False	NA	NA	NA	40964770	40945587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947157_40948736_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
23990	chr2	-	3270	8	NNC	ENSMUSG00000039660.17	novel	2396	9	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_7	140.776853384992	7	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCTAGACCCTGATGCT	NA	False	NA	NA	False	NA	NA	NA	30068440	30063479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30064198_30064933_30065082_30065198_30065825_30065930_30066505_30066626_30066677_30066750_30067495_30067604_30067972_30068397
23991	chrX	+	2631	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-87	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1434.83707140832	2	117	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCTTTTCATTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100473073	100492185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488902_100488941_100489728_100489835_100491199
23992	chrX	+	2314	5	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	26.9664142963057	305	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTCTTTGTCCTTGGGT	NA	False	NA	NA	False	NA	NA	NA	133618710	133622667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619474_133619568_133619668_133619858_133620375_133620475_133620823
23993	chr3	-	3279	9	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	-37	1592	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	21.0145039199121	6	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGCAAAGAATGGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	30754029	30731614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745501_30749635_30749780_30753847
23994	chr7	-	2515	11	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-28	-71	intron_retention	FALSE	canonical	3	461	junction_2	593.456662276193	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTATTTTTATTGTG	NA	False	NA	NA	False	NA	NA	NA	89629697	89603938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89620814_89621438_89621532_89626104_89626258_89629619
23997	chr16	-	3319	16	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	84	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	520.814294052005	2	134	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAAGTAGGCATTAATGT	NA	False	NA	NA	False	NA	NA	NA	15455180	15441759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442450_15443421_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453952_15454049_15454214_15454484_15454647_15454974
23999	chr11	+	1820	15	ISM	ENSMUSG00000017421.19	ENSMUST00000178665.8	2898	17	23	2325	-1	-1413	5prime_fragment	FALSE	canonical	1	5	junction_13	422.417701198369	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTGGATGGTGATTAG	NA	False	NA	NA	False	NA	NA	NA	80274127	80294234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215_80286400_80286617_80286702_80289241_80289297_80293471_80293538_80294190
24000	chr4	+	1707	8	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-2	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3199076928666	2	68	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147576871	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577080_147578832_147578926_147637751_147637884_147639766_147639837_147665698_147665826_147667290_147667445_147668275_147668584_147669035
24001	chr15	+	2523	8	ISM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	8021	3	-999	-2	3prime_fragment	FALSE	canonical	3	579	junction_4	58.2916663627567	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACTGTGCACTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	81908590	81924283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
24003	chr4	-	2795	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	182	0	182	0	multi-exon	FALSE	canonical	3	844	junction_1	0	542	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTTATATTG	151	False	NA	NA	False	NA	NA	NA	11007494	10988661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_10991355_11007392
24004	chr2	+	2288	8	NNC	ENSMUSG00000026864.14	novel	2613	8	NA	NA	232	-80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	945.311351365468	1	55	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACACTGGTCTAATTTT	NA	False	NA	NA	False	NA	NA	NA	34662342	34666463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662459_34662570_34662803_34663181_34663311_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
24005	chr9	-	2972	7	NIC	ENSMUSG00000011114.19	novel	1761	8	NA	NA	8	-8	intron_retention	FALSE	canonical	3	1493	junction_4	105.766514339632	330	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTTCGGTTATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	37568525	37560485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37564466_37565511_37565733_37566317_37566389_37568293
24006	chr1	-	2981	14	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_13	39.3046062314065	19	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGAATTTTAAAATAGGA	973	False	NA	NA	False	NA	NA	NA	150268491	150237055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268354
24007	chr15	+	1318	11	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	-5	-368	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	4043.62007241036	82	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATGTGCTGTGTAAAGT	NA	False	NA	NA	False	NA	NA	NA	103148888	103153014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682_103152804_103152846
24008	chr13	+	3732	11	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4977	17135	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7	49	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGTGCCCGGGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	97312933	97334838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97313100_97313306_97313410_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97327789_97334534
24009	chr7	-	5554	28	Antisense	novelGene_ENSMUSG00000059263.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	72	9	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGCCGCCGCCGCCGCCC	NA	False	NA	NA	False	NA	NA	NA	111710591	111622704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_111622952_111652421_111652627_111654047_111654168_111655684_111655820_111658177_111658276_111662452_111662598_111663570_111663650_111666289_111666440_111673675_111673773_111673861_111674015_111676996_111677165_111681634_111681768_111682293_111682370_111683061_111683120_111685201_111685313_111686205_111686311_111686970_111687179_111688729_111688846_111690609_111690730_111691910_111692693_111700940_111701119_111701643_111701725_111703154_111703271_111703554_111703675_111705984_111706115_111707640_111707689_111707778_111707908_111709145
24010	chr19	+	3124	12	FSM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	75	6	75	-6	multi-exon	FALSE	canonical	3	36	junction_10	6.85384611817119	123	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACATGAAACACTGTCT	NA	False	NA	NA	False	NA	NA	NA	46561880	46585328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110
24011	chr15	+	2794	18	NNC	ENSMUSG00000022186.15	novel	3527	17	NA	NA	-43	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	65.4783304972407	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAATGTGTGTGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	4056122	4184824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209_4184012_4184484
24012	chr10	+	2050	14	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	7172	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	371.281325257825	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACCAACAGATCTGGCCT	1315	False	NA	NA	False	NA	NA	NA	60127454	60138367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60127555_60128284_60128360_60129131_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60137867_60138263
24013	chr10	+	1571	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	-9	354	-9	-123	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	37	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAAGCCTTCTACATGG	NA	False	NA	NA	False	NA	NA	NA	127919132	127925906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
24014	chr9	+	1937	18	NIC	ENSMUSG00000032604.17	novel	2150	20	NA	NA	642	0	intron_retention	FALSE	canonical	1	1	junction_9	132.265827540405	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGTCTCTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	108387319	108393134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390922_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
24015	chr7	-	352	3	FSM	ENSMUSG00000030587.6	ENSMUST00000151339.2	443	3	99	-8	99	8	multi-exon	FALSE	canonical	3	61	junction_2	5	349	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCGCCCTCTGCCGGTCAG	2010	False	NA	NA	False	NA	NA	NA	28947664	28946988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28947160_28947321_28947391_28947552
24017	chr11	+	3103	1	Genic_Genomic	ENSMUSG00000038335.14	novel	NA	NA	NA	NA	1212	183	mono-exon	FALSE	NA	NA	NA	NA	NA	7	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCCCCAACCCCCATAC	NA	False	NA	NA	False	NA	NA	NA	74797248	74800351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_74797200_74800400
24018	chr4	-	2020	7	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	22	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	682.342146987533	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCCTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137084988	137047013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048504_137056023_137056151_137056188_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
24022	chr9	-	2327	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	2	7	2	-7	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	2169	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTGTGGTGAGATT	NA	False	NA	NA	False	NA	NA	NA	64645038	64622587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
24023	chr3	+	2602	11	NNC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	70	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	55.015997673404	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCGTTCCTACCTTGG	NA	False	NA	NA	False	NA	NA	NA	95190324	95203475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95190389_95190541_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
24024	chr1	-	4425	4	NIC	ENSMUSG00000042305.13	novel	1689	9	NA	NA	-4394	0	intron_retention	FALSE	canonical	0	0	junction_1	15.9234278833282	2	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	134282437	134273834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_134277977_134280092_134280174_134280712_134280876_134282398
24025	chr13	-	2894	3	Antisense	novelGene_ENSMUSG00000078952.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.5	1	108	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCCTAACTCTCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	97633206	97619261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_97619284_97629660_97630232_97630905
24026	chr15	-	2091	16	NIC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	-5	-5	intron_retention	FALSE	canonical	2	3	junction_11	129.39149894796	2042	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCATTTACCAGGATGTA	NA	False	NA	NA	False	NA	NA	NA	102259199	102246696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254396_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
24027	chr5	-	2262	10	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	-14	732	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	235.002652992642	18	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTATGTATGTTACTGGT	NA	False	NA	NA	False	NA	NA	NA	4154435	4132547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4133304_4136414_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
24028	chr19	-	2959	7	ISM	ENSMUSG00000003680.17	ENSMUST00000176688.8	1567	9	7	1793	7	-1131	5prime_fragment	FALSE	canonical	3	152	junction_6	32.0762979299184	21	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACACCTAGCCCTGTGGC	9943	False	NA	NA	False	NA	NA	NA	8763638	8757071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
24029	chr10	+	823	5	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	3288	15	-1418	5prime_fragment	FALSE	canonical	3	6189	junction_1	376.411012059956	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCGTGCCAAGAAAGTAGAG	2196	False	NA	NA	False	NA	NA	NA	81012479	81015044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914
24032	chr4	+	2014	1	Antisense	novelGene_ENSMUSG00000066000.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTCTCTTGGATATGCC	NA	False	NA	NA	False	NA	NA	NA	147696393	147698407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147696400_147698400
24033	chr3	+	3129	10	NNC	ENSMUSG00000034544.18	novel	3224	10	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	112.977655389391	1	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGTGACTGCTTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	66893046	67265729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_66893140_66901849_66902046_66903851_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
24034	chr19	-	1812	9	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	277.551346600949	9	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8390	False	NA	NA	False	NA	NA	NA	43512971	43488190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488860_43491382_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
24035	chr1	-	3558	9	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.2294265253357	195	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTAGTGGGGGTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	171854825	171828531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171829642_171831739_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
24036	chrX	+	2812	6	NNC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	143.86299037626	12	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAAAAAATACCTATTGG	NA	False	NA	NA	False	NA	NA	NA	84091907	84248644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84246415
24037	chr1	+	4275	25	NNC	ENSMUSG00000026213.16	novel	4153	24	NA	NA	-8	-2	intron_retention	TRUE	canonical	3	5	junction_4	14.9707469382422	62	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATTGCTGACTCTGGAA	2755	False	NA	NA	False	NA	NA	NA	75498187	75513574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502283_75502400_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
24038	chr17	+	3814	20	FSM	ENSMUSG00000061950.18	ENSMUST00000073104.11	3850	20	13	23	2	-18	multi-exon	FALSE	canonical	3	102	junction_2	67.7698974676079	217	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTGTATTACTTAGCA	NA	False	NA	NA	False	NA	NA	NA	66090362	66148898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_66090445_66090618_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
24039	chr11	+	4300	21	NNC	ENSMUSG00000009090.18	novel	4085	21	NA	NA	4	-150	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	68.0619387029197	37	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCACATTTCTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	4936915	4992579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966086_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
24040	chr14	+	3060	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	-21	-2	-12	2	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	579	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTCATTCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	59678408	59786354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
24041	chr4	+	2333	9	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	3	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	159.179487921654	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGCTTTGCTCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	130640438	130663440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662597_130662848
24042	chr11	+	1939	14	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	15	-793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	309.114023120823	12	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGCCAATTGGATTCTG	NA	False	NA	NA	False	NA	NA	NA	3913989	3929211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927195_3927870_3928033_3928826
24043	chr9	-	3689	21	NNC	ENSMUSG00000032480.18	novel	3829	22	NA	NA	-263	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	207.20991168378	1	143	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTTATATTTATCCCTT	NA	False	NA	NA	False	NA	NA	NA	109944637	109913411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913952_109914036_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915728_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944558
24044	chr18	+	2853	12	FSM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	12	-863	12	-5	multi-exon	FALSE	canonical	3	6	junction_9	36.3770429831556	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACAAAAGACCCTTTGC	NA	False	NA	NA	False	NA	NA	NA	36916295	36925610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923304_36923521_36923669_36924122
24045	chr4	-	2198	3	ISM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	755	1013	296	-1013	3prime_fragment	FALSE	canonical	3	70	junction_1	3	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTGGGGTTTTATTGT	9005	False	NA	NA	False	NA	NA	NA	133745397	133731653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_133733633_133735221_133735407_133745363
24046	chr13	+	1721	12	NNC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	939	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	88.0607416212016	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTAGTTTGCATTCT	NA	False	NA	NA	False	NA	NA	NA	38231240	38245404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38231314_38232855_38232969_38233051_38233092_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243923_38244069_38244730
24048	chr4	+	2786	5	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078497.10_ENSMUSG00000065999.14	novel	572	5	NA	NA	27040	-25	multi-exon	TRUE	non_canonical	0	0	junction_2	165.84386482472	1	158	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATAAAGCTGAAAGATTC	NA	False	NA	NA	False	NA	NA	NA	147472807	147669630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147472906_147596801_147597352_147597524_147598217_147599053_147600431_147669561
24049	chr1	+	1985	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-24	7546	0	-12	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	1	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTATTATAAGGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	59724143	59750657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
24051	chr11	+	1122	9	NNC	ENSMUSG00000010554.15	novel	2054	12	NA	NA	25	-20885	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	192.074204410691	4	11	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGGATCATCCATGAC	8519	False	NA	NA	False	NA	NA	NA	74661680	74686904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664476_74665150_74665285_74674883_74675084_74678380_74678522_74683028_74683145_74684270_74684381_74686577_74686644_74686807
24052	chr14	+	3154	7	NNC	ENSMUSG00000040997.15	novel	2401	7	NA	NA	-13	-4	intron_retention	FALSE	canonical	1	2	junction_4	136.57079970965	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTGATGACACTGTTT	NA	False	NA	NA	False	NA	NA	NA	54496750	54506617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54501918_54502850_54504451_54504639_54505224
24053	chr10	+	2630	5	NNC	ENSMUSG00000061759.16	novel	2429	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	89.2384446301032	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	4382635	4405140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4383083_4384827_4384934_4389491_4389737_4400646_4400810_4403471
24054	chr8	+	4738	4	ISM	ENSMUSG00000031562.17	ENSMUST00000098773.6	1126	5	264	-3072	242	0	intron_retention	FALSE	canonical	3	56	junction_1	168.999013803829	38	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	NA	False	NA	NA	NA	48563487	48594698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292
24055	chr5	+	3400	7	NNC	ENSMUSG00000032840.8	novel	5649	5	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	85.9335983962811	378	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTGTTTTACAGTGCCG	1649	False	NA	NA	False	NA	NA	NA	118383301	118404156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164_118399994_118400129_118401243_118403343
24057	chr3	+	1990	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	51	8	3	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	5810	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	121220196	121251848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
24058	chr18	-	2571	14	ISM	ENSMUSG00000003778.15	ENSMUST00000003876.10	4468	22	13972	1211	13924	4	3prime_fragment	FALSE	canonical	3	320	junction_13	104.746241688802	1	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCCTTTGGTGTGTCC	7869	False	NA	NA	False	NA	NA	NA	34743682	34732878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462
24060	chr7	-	2002	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	-43	-33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	621.456675883364	28	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002364	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995205_98995296_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
24061	chr14	-	2775	7	NIC	ENSMUSG00000021273.12	novel	2860	8	NA	NA	-98	-1233	intron_retention	FALSE	canonical	3	727	junction_5	73.0114146326906	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGTTTGACAGTGGAAG	4209	False	NA	NA	False	NA	NA	NA	63415344	63383834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63402079_63415131
24064	chr17	+	1405	10	ISM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	60	1666	0	669	5prime_fragment	FALSE	canonical	3	3235	junction_8	157.964443569111	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCATGGTAAGGCTGCT	NA	False	NA	NA	False	NA	NA	NA	13135328	13142288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104
24065	chr8	+	2615	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	575.396653269508	1	104	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACCCAGTATGATAGTAG	NA	False	NA	NA	False	NA	NA	NA	75836203	75854306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836719_75836845_75836927_75837057_75839171_75839345_75840792_75840953_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
24066	chr6	-	5351	1	ISM	ENSMUSG00000047749.3	ENSMUST00000058524.3	6536	4	6512	1	6512	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	71	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGGTATGTATAGTGAT	NA	False	NA	NA	False	NA	NA	NA	38269682	38264331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_38264300_38269700
24067	chr9	+	4040	12	FSM	ENSMUSG00000025899.15	ENSMUST00000053407.13	3603	12	15	-452	0	452	multi-exon	FALSE	canonical	2	19	junction_1	15.6162661540793	60	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGATTCATAATTGTAGCA	7	True	NA	NA	False	NA	NA	NA	3335492	3387381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_3335749_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
24068	chr7	-	2125	6	NIC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	5	-33	combination_of_known_junctions	FALSE	canonical	3	37	junction_5	744.783297342254	182	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002316	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002093_99002173_99002259
24069	chr2	+	3397	11	NNC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	-64	2174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	122.185964824116	2	85	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCAAACACAAAACCTGCC	NA	False	NA	NA	False	NA	NA	NA	69562087	69582066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572025_69579324_69579442_69579615
24070	chr19	-	3424	12	NNC	ENSMUSG00000025220.9	novel	5057	16	NA	NA	4475	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	289.650972638473	5	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTGCTGTGCTGCTTTT	9951	False	NA	NA	False	NA	NA	NA	45767515	45738698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_45740256_45740346_45740720_45743045_45743206_45746343_45746510_45756267_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470
24071	chr14	+	2602	18	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	15	-329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	256.731235605721	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTCTGAGTCTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	122344564	122396687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060_122396576_122396636
24073	chr18	+	1637	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	94	16	94	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	3	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179807	48181444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179800_48181400
24074	chr16	+	1844	16	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-32869	-60	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCCTTTCCTCGGGAGC	NA	False	NA	NA	False	NA	NA	NA	16134197	16176815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16134308_16134465_16134641_16136625_16136706_16137315_16137372_16139446_16139538_16141190_16141290_16141489_16141641_16141837_16141960_16149864_16149997_16151692_16151817_16154717_16154876_16156452_16156543_16158858_16158932_16159285_16159332_16163860_16164010_16176627
24075	chr2	-	2843	12	NNC	ENSMUSG00000026779.7	novel	5590	12	NA	NA	-19	-2509	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_11	38.6118638899737	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTATCTGCTGATTTTAA	NA	False	NA	NA	False	NA	NA	NA	23045928	23008126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045820
24077	chr1	+	4819	10	FSM	ENSMUSG00000039210.17	ENSMUST00000065573.14	4547	10	-3	-269	0	-8	multi-exon	FALSE	canonical	3	57	junction_8	10.9341463112378	128	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAAAGCCGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	186947704	187083893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_187036526_187036595_187048720_187048761_187054480_187054552_187073683_187073773_187080553
24079	chr8	+	2053	9	NIC	ENSMUSG00000005481.19	novel	1551	12	NA	NA	-208	0	intron_retention	FALSE	canonical	3	43	junction_3	1029.16124070769	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	84446033	84449904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
24080	chr9	+	1936	15	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	135	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	446.334595823102	2685	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTTTCTCTAATGAGTT	NA	False	NA	NA	False	NA	NA	NA	59446957	59472378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59455142_59455232_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
24081	chr10	-	2250	6	NNC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	358.732435110069	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGCGCCTTGCGTGTG	NA	False	NA	NA	False	NA	NA	NA	82599969	82584537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_82586282_82586571_82586652_82590810_82590930_82592535_82592630_82597666_82597748_82599837
24082	chr10	+	1463	12	Antisense	novelGene_ENSMUSG00002076354.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTGCAGCTTCACTTTC	3245	False	NA	NA	False	NA	NA	NA	128394510	128401708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128394840_128394929_128394984_128395097_128395220_128395299_128395401_128395947_128396163_128396526_128396605_128396785_128396852_128398695_128398791_128398936_128399005_128399092_128399201_128399447_128399574_128401607
24084	chr15	-	1937	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_10	121.107555503362	47	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	NA	False	NA	NA	NA	76501048	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500772
24085	chr18	+	4213	4	NIC	ENSMUSG00000034300.18	novel	4256	5	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	12.657891697365	1	119	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCAACCTTGTGTACGAT	5087	False	NA	NA	False	NA	NA	NA	34892608	34906806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34892651_34895547_34895778_34901220_34902006_34903650
24086	chr17	+	2197	6	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-8	-2015	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1305.35916896462	476	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGGTATGCTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	13226737	13237006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912_13234248_13235862
24088	chr17	+	1831	1	Antisense	novelGene_ENSMUSG00000066878.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACATGGCTGCAGGAACA	NA	False	NA	NA	False	NA	NA	NA	90215906	90217737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_90215900_90217700
24089	chr1	-	4055	20	NNC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	-17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	58.5170856030888	5	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTAAATTATGGGTACG	NA	False	NA	NA	False	NA	NA	NA	128030801	127881921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_128019562_128019748_128030743
24090	chr8	-	3341	11	NIC	ENSMUSG00000002949.16	novel	3041	12	NA	NA	4	-20	intron_retention	FALSE	canonical	3	458	junction_4	35.296033771516	18	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCAAAGCGCAGAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	4325909	4309750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4316681_4316769_4316863_4317254_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
24091	chr6	-	1769	6	NIC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	1	-129	intron_retention	FALSE	canonical	3	1846	junction_4	37.5126645281297	102	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGAGCTTTGTGGGTTGT	NA	False	NA	NA	False	NA	NA	NA	124791120	124787683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124788351_124788479_124788568_124788844_124789500_124789583_124789669_124789752_124789877_124790970
24092	chr6	+	3198	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	17	-46	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	176.881080578638	17	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAATTCTTATATTTG	17	False	NA	NA	False	NA	NA	NA	30048087	30153133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
24093	chr6	+	1716	7	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	-18	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	934.400996479682	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTATGTGATGACTTT	NA	False	NA	NA	False	NA	NA	NA	51447624	51460676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459_51459560_51459609
24094	chr3	+	1800	16	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	246.680756354353	2691	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCTTAAAGTGTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	69629353	69656370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654206_69655630_69655702_69656104
24096	chr9	-	4744	8	FSM	ENSMUSG00000036943.10	ENSMUST00000041139.9	4733	8	-11	0	-11	0	multi-exon	FALSE	canonical	2	19	junction_5	12.9992150469455	50	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACTCTTAAGTGGATT	7740	False	NA	NA	False	NA	NA	NA	66826980	66750945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
24097	chr17	-	1239	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-213	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821661	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
24098	chr1	-	2880	24	NNC	ENSMUSG00000041406.15	novel	3179	24	NA	NA	0	-260	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	89.6353250308367	11	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAAATAATCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	163822365	163781582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_163781915_163782918_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789564_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
24099	chr10	-	2517	10	ISM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	65	503	65	-503	intron_retention	FALSE	canonical	3	645	junction_7	44.1926199078646	6	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAAATGTTTGGATAAACT	NA	False	NA	NA	False	NA	NA	NA	13068847	13054386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851
24100	chr17	-	2800	4	Intergenic	novelGene_147	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	144.721187882847	129	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAAGGTTGTCTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	35219811	35215706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35216990_35217063_35218446_35219142_35219186_35219719
24101	chr5	+	3249	18	ISM	ENSMUSG00000042605.17	ENSMUST00000161064.8	3294	19	23483	-1	-5250	0	3prime_fragment	FALSE	canonical	0	0	junction_4	63.7042800298194	148	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	121910741	121953013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
24102	chr4	-	3521	4	FSM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	-28	12	-28	-12	multi-exon	FALSE	canonical	3	70	junction_1	2.62466929133727	241	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGGTACTGGTCTCTCT	8222	False	NA	NA	False	NA	NA	NA	133746180	133730652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133733633_133735221_133735407_133745363_133745561_133746021
24103	chr3	+	2879	3	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	141	-22	intron_retention	FALSE	canonical	3	443	junction_1	30	2	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTAAAAAAATTTTTTTC	7728	False	NA	NA	False	NA	NA	NA	108291850	108295473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108294053_108294593_108294712_108294914
24106	chr7	-	2415	13	FSM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	17	2421	0	229	multi-exon	FALSE	canonical	3	464	junction_7	37.8483817355511	545	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTGTGGCTCAGTTGGC	NA	False	NA	NA	False	NA	NA	NA	45159813	45142302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
24107	chr9	-	1608	12	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2567.46129554707	3	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996628	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975887_89976439_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996584
24108	chr8	-	1421	1	Antisense	novelGene_ENSMUSG00000047388.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACAGACAGCTAGAAGCT	5225	False	NA	NA	False	NA	NA	NA	117687064	117685643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_117685600_117687100
24109	chr8	+	2870	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	46	0	-15	0	multi-exon	FALSE	canonical	3	239	junction_9	14.7126551724093	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	105951822	105979685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
24110	chr8	+	1603	12	FSM	ENSMUSG00000005481.19	ENSMUST00000140521.8	1551	12	-69	17	22	-16	multi-exon	FALSE	canonical	3	43	junction_5	911.296107223839	134	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACTTTTATTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	84441827	84449887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
24112	chrX	+	4018	6	FSM	ENSMUSG00000025860.16	ENSMUST00000145065.2	5407	6	-2	1391	-2	-1391	multi-exon	FALSE	canonical	2	7	junction_1	43.8880393729317	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCAGTTAATGGCTTATG	NA	False	NA	NA	False	NA	NA	NA	41157629	41197142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_41157750_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
24113	chr5	+	1783	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1511.63009728584	3	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	708	False	NA	NA	False	NA	NA	NA	77099575	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099687_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109305_77112436_77112470_77114093_77114253_77114494
24114	chr6	-	4014	15	FSM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	31	-1363	-3	1363	multi-exon	FALSE	canonical	2	55	junction_12	11.4653426304081	182	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACAGGCAAGTCTCCTAG	5807	False	NA	NA	False	NA	NA	NA	34887780	34855997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
24116	chr11	+	3054	20	FSM	ENSMUSG00000017686.18	ENSMUST00000017831.16	3029	20	-25	0	10	0	multi-exon	FALSE	canonical	3	150	junction_18	134.011803341732	263	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCTTTTCAAGTATTTA	NA	False	NA	NA	False	NA	NA	NA	80099919	80157593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80156567
24117	chr2	-	2992	13	NNC	ENSMUSG00000098950.8	novel	4955	16	NA	NA	17777	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	90.9558806357358	1	32	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCCGCTCTTGTTGTGTT	9129	False	NA	NA	False	NA	NA	NA	155921071	155913760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920565_155920819_155920895_155920982
24119	chr10	+	2225	9	NIC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	-1	-148	intron_retention	FALSE	canonical	3	1673	junction_4	23.6524311646816	26	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATACCAACAGAACCTTC	2285	False	NA	NA	False	NA	NA	NA	79795984	79803722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
24120	chr13	+	3714	20	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	30	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_15	60.6976065918861	1	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCGTCTACTGGCATTT	NA	False	NA	NA	False	NA	NA	NA	35059516	35090045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35085657_35085980_35086115_35086612_35086659_35087169_35087257_35088026_35088073_35089865
24121	chr18	+	2207	11	NNC	ENSMUSG00000024576.15	novel	1222	11	NA	NA	-2	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	774.205889928513	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTTTCTGTAAGGAAGT	465	False	NA	NA	False	NA	NA	NA	61688381	61721363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688727_61688796_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
24122	chr4	-	2084	2	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	17040	0	15285	0	3prime_fragment	FALSE	canonical	3	1578	junction_1	0	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141308495	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141305255_141308293
24124	chr16	-	2061	8	NIC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	-3	693	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	735.350006903557	1	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTGGCCAAGTAGAACT	NA	False	NA	NA	False	NA	NA	NA	22084679	22064504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22065617_22065939_22066014_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
24125	chr16	+	3994	13	FSM	ENSMUSG00000022833.8	ENSMUST00000231609.2	3999	13	-5	10	-5	-2	multi-exon	FALSE	canonical	3	110	junction_6	18.9487613198213	84	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATACGTGAATTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	34511096	34545562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893_34530036_34535707_34535779_34541808_34542028_34542106_34542240_34543379
24126	chr8	-	2615	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	-17	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	89.2075354160174	514	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATGAGAGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	22675852	22658171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_22658991_22659728_22659964_22663277_22663349_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
24127	chr1	+	2947	10	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	49	-427	intron_retention	FALSE	canonical	0	0	junction_9	215.691137200087	1	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTTAGTATTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	167177608	167195674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193462_167194973
24128	chr3	+	2279	8	NIC	ENSMUSG00000028049.16	novel	1489	9	NA	NA	-5	-10	intron_retention	FALSE	canonical	3	743	junction_2	151.227764430656	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAACTGGAACTCACCCA	NA	False	NA	NA	False	NA	NA	NA	89084791	89090060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
24129	chr10	-	2007	12	FSM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	2	0	2	0	multi-exon	FALSE	canonical	3	1317	junction_1	96.7988457003782	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	85793685	85774500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
24130	chr6	-	2717	13	NNC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	0	-353	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	89.517068515203	2	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACCCCAAATCACCAAGA	NA	False	NA	NA	False	NA	NA	NA	112673631	112603728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112604166_112604735_112605486_112621548_112621712_112626534_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
24131	chr9	+	2939	6	NNC	ENSMUSG00000057982.9	novel	1425	6	NA	NA	0	1080	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	56.3418139573088	3	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATATAAAGTTCTAGTT	749	False	NA	NA	False	NA	NA	NA	22137018	22152471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150896_22151030
24132	chr6	-	2787	5	NIC	ENSMUSG00000014748.14	novel	2984	6	NA	NA	6	-33	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	255.470521782847	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAGCACTCAATAAATG	9773	False	NA	NA	False	NA	NA	NA	83752734	83745899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83748286_83749223_83749292_83750691_83750846_83751999_83752080_83752635
24133	chr9	-	2551	2	NIC	ENSMUSG00000074476.7	novel	1696	3	NA	NA	-6	-7	intron_retention	FALSE	canonical	3	1938	junction_1	0	30	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTAAAAAAAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	21671584	21666744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_21669126_21671414
24134	chr6	+	3114	17	NIC	ENSMUSG00000004535.13	novel	3285	18	NA	NA	1	-2	combination_of_known_splicesites	FALSE	canonical	2	9	junction_9	160.073371848662	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACCTTTGTAAATGATT	NA	False	NA	NA	False	NA	NA	NA	52690735	52743763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
24135	chr16	-	6162	24	FSM	ENSMUSG00000014039.19	ENSMUST00000121584.8	6194	24	18	14	18	-14	multi-exon	FALSE	canonical	0	0	junction_23	11.3557360404684	38	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTTTTCAATTGCTG	6501	False	NA	NA	False	NA	NA	NA	97653032	97592733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618048_97618246_97619411_97619542_97622967_97623211_97630810_97630913_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652972
24136	chr17	+	1765	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	-3	7	2	-1	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	51	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGAGTGCTGGTTTTA	886	False	NA	NA	False	NA	NA	NA	24633621	24644868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
24137	chr4	-	3708	1	ISM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	25070	10	7238	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	14	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTAAATTGTCTTCTT	9308	False	NA	NA	False	NA	NA	NA	129541490	129537782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129537800_129541500
24138	chr10	-	2476	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	13	2	13	-2	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	914	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCACCAGTCTGGATCC	NA	False	NA	NA	False	NA	NA	NA	7539054	7505146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
24139	chr15	-	2546	15	NIC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	-1	0	intron_retention	FALSE	canonical	3	447	junction_7	36.1203345974061	11	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACCAGGATGTAACTCC	NA	False	NA	NA	False	NA	NA	NA	102259123	102246691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
24140	chr10	+	2894	10	NIC	ENSMUSG00000078427.4	novel	918	11	NA	NA	10	0	intron_retention	FALSE	canonical	3	2059	junction_7	926.617518014503	101	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAATGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	128657786	128713486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128689121_128708289_128708380_128713201
24141	chr10	-	1756	14	ISM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	939	12	500	-7	3prime_fragment	FALSE	canonical	3	1936	junction_8	220.060884528369	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTTAGCCCTTAATGTC	NA	False	NA	NA	False	NA	NA	NA	116898780	116886917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721
24143	chr17	+	3130	10	NNC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	135.603270290876	74	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTCTTGGCTTTACTT	NA	False	NA	NA	False	NA	NA	NA	17594826	17615159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17594933_17597980_17598120_17598744_17598862_17600905_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
24144	chrX	+	3417	24	NNC	ENSMUSG00000034160.14	novel	3840	23	NA	NA	3	-599	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	170.981288842421	10	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGGAGAATTGCCCTAT	NA	False	NA	NA	False	NA	NA	NA	100683672	100725947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100683717_100683823_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100697581_100697735_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
24145	chr2	-	3571	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	-2	-2	-2	0	multi-exon	FALSE	canonical	3	183	junction_20	31.6521721213569	290	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCAGTACTGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	11782395	11747383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
24146	chr3	+	2063	13	NNC	ENSMUSG00000027810.15	novel	1945	13	NA	NA	0	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	224.907558170512	2	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTACAGGATGTATT	NA	False	NA	NA	False	NA	NA	NA	58433463	58465104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58433508_58438507_58438578_58444954_58444983_58448490_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
24147	chr14	-	5810	6	NIC	ENSMUSG00000021978.10	novel	5977	7	NA	NA	52	-15	combination_of_known_splicesites	FALSE	canonical	3	35	junction_5	51.808879547815	40	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGACTTTAACTCATGCAG	NA	False	NA	NA	False	NA	NA	NA	65335502	65289526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_65292272_65294279_65294409_65296433_65296579_65304131_65304260_65313032_65315639_65335445
24148	chr11	-	2893	3	Fusion	ENSMUSG00002075586.1_ENSMUSG00000071415.7	novel	480	2	NA	NA	855	15	multi-exon	FALSE	non_canonical	0	0	junction_2	6719.5	95	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACACCTTTTCCAATATC	NA	False	NA	NA	False	NA	NA	NA	97672247	97668848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_97668991_97669090_97670504_97670909
24150	chr9	-	4269	17	NIC	ENSMUSG00000032122.16	novel	2945	19	NA	NA	-2	-78	intron_retention	FALSE	canonical	3	62	junction_13	6.96307223860273	12	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCACTGCTTATCCTTG	NA	False	NA	NA	False	NA	NA	NA	37166712	37141885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
24152	chrX	-	2167	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	417.776384490575	3	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	100128978	100122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123345_100123719_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
24153	chr7	-	2119	11	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	-2	0	intron_retention	FALSE	canonical	1	2	junction_3	133.910268463625	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976595	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
24154	chr16	-	2923	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	391.35030164004	1	98	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAACTGTATCATTGTACC	8120	False	NA	NA	False	NA	NA	NA	4867717	4831770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832866_4833229_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867672
24155	chr4	+	2705	19	ISM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	70	5585	39	192	5prime_fragment	FALSE	canonical	3	466	junction_4	45.4584670025532	4	80	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTATAACATTTGTATAT	NA	False	NA	NA	False	NA	NA	NA	148642957	148661262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606
24157	chr2	-	2815	2	ISM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	40	-4	-8	0	intron_retention	FALSE	canonical	3	327	junction_1	0	15	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	NA	False	NA	NA	NA	152672546	152622587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_152624203_152671346
24158	chr7	+	2935	10	NNC	ENSMUSG00000030965.20	novel	2892	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	93.6648872903347	367	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATACGATATTTTAGTGT	NA	False	NA	NA	False	NA	NA	NA	132460977	132486836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132480741_132480813_132482495_132482611_132484763
24159	chr18	+	2184	7	NNC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	170.619134005799	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTTTTGTAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	21134967	21160587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135167_21141800_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
24160	chr10	+	2623	8	FSM	ENSMUSG00000020088.11	ENSMUST00000219506.2	897	8	-12	-1714	-12	-45	multi-exon	FALSE	canonical	0	0	junction_2	587.872053273846	10	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGTCTGTATCCTAAG	NA	False	NA	NA	False	NA	NA	NA	61516131	61529031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61516193_61520012_61520111_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
24161	chr9	+	2232	12	FSM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	-52	0	-40	0	multi-exon	FALSE	canonical	3	353	junction_2	48.4889013457617	885	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCTATGCTTAAGAAAAC	874	False	NA	NA	False	NA	NA	NA	75348765	75373714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356_75365544_75368287_75368386_75373475
24162	chr2	+	3032	20	Intergenic	novelGene_2769	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAAAAGCTCATCCCCG	NA	False	NA	NA	False	NA	NA	NA	165627455	165726638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_165627661_165629085_165629175_165633827_165633896_165634726_165634888_165636314_165636558_165638006_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165670127_165670617_165675233_165675350_165676813_165676890_165679202_165679256_165680731_165680820_165681917_165682013_165684683_165684798_165687940_165688090_165693922_165694069_165717624_165717696_165726527
24164	chr2	-	3335	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	1	2343	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	68.6164865190737	138	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	156681739	156672625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681335
24165	chr4	+	2568	10	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	-4050	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	199.060261364043	858	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTCATGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	130636385	130663450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130636470_130640512_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662433_130662469
24166	chr5	+	2117	13	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-6	563	intron_retention	FALSE	canonical	3	859	junction_7	68.3745302644844	292	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAAGCTTTCCTGTCATG	NA	False	NA	NA	False	NA	NA	NA	31652104	31668766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
24167	chr11	+	1425	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-29	multi-exon	FALSE	non_canonical	0	0	junction_2	980	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAGTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120654177_120654315
24170	chr9	-	1871	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	61	0	-3	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	21	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775165	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
24171	chr7	+	1806	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	343	2343	13	1109	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCTGTCCTCCAGTGA	NA	False	NA	NA	False	NA	NA	NA	83541550	83548397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
24172	chr2	-	3439	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	82	-1	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	267	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCAGTACTGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	11782236	11747384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
24173	chr18	+	2054	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	49	762	-2	200	multi-exon	FALSE	canonical	3	1498	junction_1	106	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTACAAATGGTGCC	NA	False	NA	NA	False	NA	NA	NA	46730819	46742516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
24174	chr6	-	1876	7	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3379.3418820172	8	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446822	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51439036_51439318_51440235_51440390_51440474_51441068_51441192_51444142_51444276_51446650
24175	chr4	-	2833	10	Antisense	novelGene_ENSMUSG00000028252.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	74	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCGGAGGAAGAGAACAGC	NA	False	NA	NA	False	NA	NA	NA	21750106	21727757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_21727913_21730392_21730503_21732216_21732299_21732484_21732557_21735414_21735469_21740591_21740678_21742610_21742709_21746344_21746425_21746648_21746773_21748134
24176	chr9	+	3038	5	Intergenic	novelGene_1069	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGCCTGTACACTCTGC	NA	False	NA	NA	False	NA	NA	NA	58125382	58137880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129152_58136640_58136691_58137110_58137370_58137775
24177	chr19	-	1781	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1018.60541918841	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGACTTTCATCCTTC	NA	False	NA	NA	False	NA	NA	NA	8691236	8684930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685402_8685581_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
24178	chr3	-	3307	6	NIC	ENSMUSG00000001017.16	novel	2972	6	NA	NA	29	-2	intron_retention	FALSE	canonical	3	6	junction_3	681.552228372852	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACCCAGGCTTTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	90416728	90406266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_90407415_90409422_90409561_90410402_90410590_90412701_90412786_90413414_90414934_90416497
24179	chr2	+	2667	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	0	-1414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	47.0063573693612	3	96	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTTTATACAACCCTC	NA	False	NA	NA	False	NA	NA	NA	152068795	152122358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152121290_152121377
24180	chr12	+	5775	18	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-1	-114	intron_retention	FALSE	non_canonical	0	0	junction_12	192.338171766135	2	237	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCAATTCTTTTGCAGAA	3980	False	NA	NA	False	NA	NA	NA	83679024	83728680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83711034_83714867_83715083_83715192_83715283_83718677_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722959_83728241
24181	chr3	-	2994	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	364	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	97517529	97468057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
24182	chr4	+	3537	9	NNC	ENSMUSG00000028683.15	novel	1555	12	NA	NA	-2	1	intron_retention	FALSE	canonical	0	0	junction_7	283.887274063139	5	62	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTAGGTGTGGCTCAGTG	1862	False	NA	NA	False	NA	NA	NA	116879349	116944043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116879510_116885607_116885754_116901632_116901793_116915960_116916051_116922537_116922666_116923570_116926019_116927835_116927985_116938760_116938859_116943885
24183	chr8	-	2083	10	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	170	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	252.106679359706	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAACTATGGTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	31658552	31649497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658264
24184	chr18	-	2282	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	73	2371	-1	157	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	3	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAACTTTTGACATTTC	13	True	NA	NA	False	NA	NA	NA	10030068	9995436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
24186	chr11	+	1360	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	23	-17528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	143.5	801	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCTTTCTGACTCTCTG	9454	False	NA	NA	False	NA	NA	NA	88861100	88864252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861555_88861719_88861820_88863446
24187	chr5	+	2073	13	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	26	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	218.543473935965	17	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTTATTTTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	64250318	64285698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265123_64267968_64267989_64269350_64269541_64273642_64273777_64285119
24188	chr16	-	2251	16	NNC	ENSMUSG00000039637.16	novel	4296	28	NA	NA	-3966	23	intron_retention	FALSE	canonical	3	7	junction_15	27.7788088697522	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTCCCCTGCTCAGCA	7986	False	NA	NA	False	NA	NA	NA	4501607	4451164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4451295_4451577_4451702_4452162_4452295_4452452_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415_4497856_4501339
24189	chr16	-	1848	16	Fusion	ENSMUSG00000039637.16_ENSMUSG00000014301.14	novel	4296	28	NA	NA	1407	-14	multi-exon	TRUE	canonical	2	16	junction_4	459.976211945309	4	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCACTGCATATGTTC	NA	False	NA	NA	False	NA	NA	NA	4450316	4434341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4445084_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276
24190	chr8	-	3051	8	NNC	ENSMUSG00000031523.17	novel	6159	14	NA	NA	-7640	-773	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.89949493661167	1	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTATTTATACCTCAG	NA	False	NA	NA	False	NA	NA	NA	37052063	37035677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_37036459_37041291_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694
24191	chrX	-	3105	17	NNC	ENSMUSG00000025264.13	novel	3796	5	NA	NA	7124	39288	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	16	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGCAGCCCGGGTTCCAA	NA	False	NA	78	True	NA	NA	NA	149872395	149830801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149830975_149849174_149849350_149849704_149849882_149850003_149850446_149851870_149851960_149852634_149852785_149855163_149855324_149855427_149855569_149861954_149862013_149862152_149862301_149862874_149862966_149863110_149863197_149868629_149868654_149869105_149869212_149869515_149869642_149869815_149869976_149871596
24192	chr15	-	1830	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	7	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	607.643713579809	3	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGGTTTCTTCCTTCGT	2752	False	NA	NA	False	NA	NA	NA	77855006	77843211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848331_77849131_77849216_77850334_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
24193	chr17	+	3373	20	Antisense	novelGene_ENSMUSG00000024135.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	49	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACGCCGGAAGTCCCGC	NA	False	NA	NA	False	NA	NA	NA	86292110	86452616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_86292914_86295754_86295943_86308864_86309035_86311273_86311382_86358513_86358597_86365103_86365199_86405942_86406048_86406632_86406722_86410268_86410429_86416654_86416761_86422618_86422725_86427341_86427476_86428075_86428174_86433535_86433678_86435143_86435261_86437540_86437707_86443589_86443964_86446496_86446676_86449785_86449868_86452548
24194	chrX	+	3116	25	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14649	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_11	111.787551172848	1	79	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATGTCTTCAGTTATT	4680	False	NA	NA	False	NA	NA	NA	159921912	160039896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922056_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
24195	chr2	-	3170	5	NNC	ENSMUSG00000027109.17	novel	3808	6	NA	NA	-790	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	185.290818714798	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTGTTGTAGTCCGATG	NA	False	NA	NA	False	NA	NA	NA	72801600	72766991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72768214_72768270_72768727_72770886_72771084_72776889_72777083_72800498
24196	chr3	+	2000	12	Intergenic	novelGene_3176	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	56	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCGGCGCCTAGCTCGCCG	NA	False	NA	NA	False	NA	NA	NA	108333900	108352561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_108334296_108334574_108334707_108335492_108335650_108335923_108336052_108336556_108336777_108338778_108338936_108340332_108340477_108341363_108341523_108343200_108343285_108344826_108344898_108350053_108350157_108352311
24198	chr15	-	1611	5	Fusion	ENSMUSG00000023004.9_ENSMUSG00000072235.7	novel	1803	4	NA	NA	152	-4	multi-exon	TRUE	non_canonical	0	0	junction_1	1841.43551339709	27	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	NA	False	NA	NA	False	NA	NA	NA	98851432	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_-_98829737_98848184_98848896_98849068_98849218_98849349_98849573_98851331
24199	chr4	-	1813	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	38	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	1	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2530	False	NA	NA	False	NA	NA	NA	129229125	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129203810_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
24200	chr11	+	1667	8	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	-63	-809	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_5	1010.03465287088	4225	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTGTACATTTT	NA	False	NA	NA	False	NA	NA	NA	97206670	97219937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217433_97217758_97218911_97219086_97219307
24201	chr14	-	3312	19	NNC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	42.1890586131839	7	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	123220639	123156382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209190_123209237_123209369_123210581_123210698_123215485_123215699_123220583
24203	chr6	+	1833	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	291	391	12	-391	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	421	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGCTGGCTCAGGGAAG	2955	False	NA	NA	False	NA	NA	NA	122285969	122294248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
24204	chr17	+	3797	5	FSM	ENSMUSG00000067942.7	ENSMUST00000088811.7	3800	5	-6	9	-1	-9	multi-exon	FALSE	canonical	3	20	junction_1	17.6405073623181	62	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGAATTTGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	21229196	21249114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21245722
24205	chr11	+	2221	10	NIC	ENSMUSG00000059552.14	novel	1867	11	NA	NA	1	-4	intron_retention	FALSE	canonical	3	351	junction_9	561.105060473428	138	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTATATGGTTTTGAGAGG	NA	False	NA	NA	False	NA	NA	NA	69471228	69482694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
24206	chr14	+	4695	1	Genic_Genomic	ENSMUSG00000022109.7	novel	NA	NA	NA	NA	4127	10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	102	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCTCTGAGATCATTA	NA	False	NA	NA	False	NA	NA	NA	73751604	73756299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_73751600_73756300
24209	chr1	-	3625	5	FSM	ENSMUSG00000013997.11	ENSMUST00000141357.2	2932	5	14	-707	-1	-51	multi-exon	FALSE	canonical	3	137	junction_3	5.87367006223537	106	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTTGTTAGAAGACCTGT	898	False	NA	NA	False	NA	NA	NA	171173194	171168189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171172108_171172481
24210	chr1	+	3197	7	NNC	ENSMUSG00000026254.18	novel	1119	7	NA	NA	38	-242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1031.15766926736	2	127	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAGAGCAGGCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	87142045	87167968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87142218_87147302_87147418_87148641_87148793_87152100_87152180_87153571_87153725_87153818_87153945_87165567
24211	chr16	-	2564	9	NNC	ENSMUSG00000033581.18	novel	3267	14	NA	NA	-242	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	356.139697836397	3	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTTGCTCTTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	21898110	21878206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21897747
24212	chr10	+	3015	7	ISM	ENSMUSG00000006498.17	ENSMUST00000057343.16	1765	12	13	1392	0	-1018	intron_retention	FALSE	canonical	3	1431	junction_3	79.9348693207997	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTCTCTTCGGTATG	1621	False	NA	NA	False	NA	NA	NA	79690498	79697866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614
24213	chr7	+	1487	1	FSM	ENSMUSG00000083396.2	ENSMUST00000121585.2	1194	1	-123	-170	-123	170	mono-exon	FALSE	NA	NA	NA	NA	NA	19	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAAGTTC	NA	False	NA	NA	False	NA	NA	NA	140470676	140472163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140470700_140472200
24215	chr8	-	4963	23	NIC	ENSMUSG00000017765.18	novel	3811	24	NA	NA	11	0	intron_retention	FALSE	canonical	2	4	junction_22	38.8259519581239	56	56	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTGCTCCGGCTC	NA	False	NA	NA	False	NA	NA	NA	106692695	106670224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692550
24216	chr5	-	2780	11	NNC	ENSMUSG00000039753.17	novel	2858	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	172.323561940902	26	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8868	False	NA	NA	False	NA	NA	NA	43939452	43901957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_43902718_43908203_43908353_43915563_43916249_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
24217	chr15	-	3160	5	Antisense	novelGene_ENSMUSG00000023051.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTCTGGTCCCATACTCC	NA	False	NA	NA	False	NA	NA	NA	102432106	102427630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_102429647_102430156_102430230_102430413_102430533_102430857_102430987_102431283
24218	chr11	-	3280	11	FSM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	60	33	30	-33	multi-exon	FALSE	canonical	3	68	junction_1	62.20843994186	151	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAAATAAAGTATCTCTG	NA	False	NA	NA	False	NA	NA	NA	94212754	94181997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
24219	chr19	-	2036	17	NIC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-11	8	combination_of_known_splicesites	FALSE	canonical	1	11	junction_1	369.961653418297	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTGGTTTAATGTCAACT	NA	False	NA	NA	False	NA	NA	NA	27407236	27367452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_27367714_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
24220	chr7	-	5153	9	FSM	ENSMUSG00000002265.18	ENSMUST00000051209.11	8694	9	12	3529	10	1974	multi-exon	FALSE	canonical	3	81	junction_3	8.98262211161084	3	70	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCCATAATGTCTATAAGA	NA	False	NA	NA	False	NA	NA	NA	6733408	6710419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_6714731_6714849_6714943_6715671_6715775_6719052_6719157_6720111_6720196_6720797_6720888_6721424_6721556_6729488_6729574_6733256
24221	chr3	+	1945	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	13	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	689.290553725801	1	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCATTTGAGACCGTTGT	3827	False	NA	NA	False	NA	NA	NA	88204445	88229063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218977_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
24223	chr12	+	1889	14	NNC	ENSMUSG00000073079.7	novel	4498	16	NA	NA	51	383	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	266.196817340347	2	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAGGGTTCGTTAACTT	2925	False	NA	NA	False	NA	NA	NA	55127395	55160059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142695_55146729_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
24224	chr11	-	3520	18	Fusion	ENSMUSG00000085765.2_ENSMUSG00000001323.18	novel	3183	8	NA	NA	-124547	-14742	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGCGCGCTCACCCACTC	NA	False	NA	NA	False	NA	NA	NA	75054721	74816669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_74816828_74822400_74822594_74823164_74823278_74825820_74825926_74826182_74826262_74836345_74836457_74836830_74837038_74872669_74872739_74880894_74881040_74929436_74929554_74932691_74932862_74944585_74944788_75030016_75030199_75033584_75033728_75046984_75047140_75050000_75050211_75050647_75050731_75053643
24225	chr14	-	1697	8	Antisense	novelGene_ENSMUSG00000021832.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGTAAGAGGCAATTCTA	8009	False	NA	NA	False	NA	NA	NA	45587148	45574958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_45575021_45578084_45578147_45578227_45578351_45578733_45578799_45580855_45580979_45581103_45581183_45584198_45584271_45586037
24226	chr5	+	2302	15	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	52	junction_12	80.9591733845031	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9182	False	NA	NA	False	NA	NA	NA	110987848	111022006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
24228	chr3	-	1796	2	Genic_Genomic	ENSMUSG00000069083.5	novel	1590	1	NA	NA	-119	253	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTGATTT	NA	False	NA	NA	False	NA	NA	NA	25266888	25264926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_25266286_25266451
24229	chr4	-	2678	15	NIC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	0	-4	intron_retention	FALSE	canonical	3	684	junction_5	53.4872195301011	657	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTTTGCTTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	155845550	155825101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
24230	chr16	-	2389	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	213	-55	-176	55	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	979	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTGTTCCTCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	94327476	94298586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
24231	chr6	+	2321	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-2	-34	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	163.040383545509	481	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	-16	True	NA	NA	False	NA	NA	NA	30047998	30140869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
24235	chr1	-	2066	17	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	129	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	658.293339700281	1	71	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTACAGCTGATGATAGT	NA	False	NA	NA	False	NA	NA	NA	128344967	128291456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306604_128312247_128312292_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
24237	chr4	+	2337	15	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	12	133	intron_retention	FALSE	canonical	2	16	junction_3	252.155483293745	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTCTTTTATTCCTACT	9993	False	NA	NA	False	NA	NA	NA	155954035	155973323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959685_155959824_155969554_155969654_155969743_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
24241	chr3	-	2670	12	NNC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	-3118	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_11	143.840074187094	14	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30705136	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30702239_30702593_30704510
24242	chr8	+	2778	15	FSM	ENSMUSG00000031889.10	ENSMUST00000141957.8	2460	15	-21	-297	-21	0	multi-exon	FALSE	canonical	3	9	junction_6	68.2304019854935	4	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	105951816	105979685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
24243	chr16	+	2444	6	NNC	ENSMUSG00000023147.18	novel	2495	5	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	143.502473846272	18	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACTGGGTACTGTGGAAA	NA	False	NA	NA	False	NA	NA	NA	95946597	95959043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078_95957988_95958038
24244	chr7	-	3700	21	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	5	-19	intron_retention	FALSE	canonical	0	0	junction_7	511.869932209346	1	169	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTCTTCTGAACGGTG	NA	False	NA	NA	False	NA	NA	NA	143153788	143111462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122105_143122660_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124700_143124816_143125220_143125334_143128249_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
24245	chr9	-	4063	14	Fusion	ENSMUSG00000049734.10_ENSMUSG00000025646.10	novel	2572	13	NA	NA	0	-1	multi-exon	FALSE	canonical	1	1	junction_1	40.662705533471	175	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTTGCCGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	108903192	108887004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_108887938_108888256_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
24247	chr6	+	2532	12	NIC	ENSMUSG00000058440.15	novel	2491	12	NA	NA	-1	-6	combination_of_known_junctions	FALSE	canonical	2	18	junction_11	143.761223061709	24	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCACAAGATTTGCACAG	12	True	NA	NA	False	NA	NA	NA	30048026	30130109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30129179
24248	chr14	-	3163	5	NNC	ENSMUSG00000023243.10	novel	3392	5	NA	NA	22	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	53.0394900050896	20	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTGGTGTGTGGTATGT	NA	False	NA	NA	False	NA	NA	NA	20231855	20190127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20192526_20194702_20194872_20195023_20195051_20196632_20196681_20231334
24250	chr6	-	2803	9	NNC	ENSMUSG00000040669.15	novel	3683	13	NA	NA	9413	-41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	351.596870542103	1	114	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTCAACCCTCTTTCCC	NA	False	NA	NA	False	NA	NA	NA	122302691	122294849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299041_122299283_122299432_122299966_122300773_122302416
24251	chr6	-	4080	9	NNC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	1	-1	intron_retention	FALSE	canonical	0	0	junction_2	143.329548157384	4	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTATAAAAAAACCACCCG	NA	False	NA	NA	False	NA	NA	NA	113354477	113343616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_113344142_113347182_113347369_113347895_113348010_113349238_113349343_113349425_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
24253	chr7	-	1499	11	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	9836.82820272876	1	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	126398312	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396077_126396508_126396568_126396604_126396721_126396815_126396952_126397155_126397299_126398216
24254	chr7	-	3100	5	NIC	ENSMUSG00000042502.11	novel	3284	7	NA	NA	5	-3	intron_retention	FALSE	canonical	3	356	junction_4	109.975849621633	8	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATTGTGGTAATTTAAT	5476	False	NA	NA	False	NA	NA	NA	126795154	126791199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126793103_126793186_126793814_126793915_126794331_126794532_126794634_126795100
24255	chr8	-	1787	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-11	-4	-11	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	8	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760028	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
24256	chr11	-	1864	3	Genic_Genomic	ENSMUSG00000082454.4	novel	1848	1	NA	NA	89	1156	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGATTTATCTATTGGT	NA	False	NA	NA	False	NA	NA	NA	48644452	48641537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48641598_48642443_48643809_48644013
24257	chr2	+	4155	20	NNC	ENSMUSG00000026991.21	novel	4484	21	NA	NA	13948	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	25.2905553194399	154	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGTGTTCTTGCAGTT	NA	False	NA	NA	False	NA	NA	NA	59045065	59185547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_59045159_59096740_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142262_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59182605_59182680_59184546
24258	chr13	-	2685	11	NNC	ENSMUSG00000032745.19	novel	3299	12	NA	NA	-660	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	526.985588038231	1	72	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTTGCAAAGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	111624906	111562704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577185_111577351_111585475_111585534_111589594_111589782_111589906_111590031_111603384_111603505_111623956
24259	chr5	-	2768	13	NNC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	4	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	233.086342490408	5	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCCCAAGTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	52347852	52307555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314885_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
24260	chr8	+	2511	7	NIC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	-2	164	intron_retention	FALSE	canonical	3	1933	junction_4	94.9906428140279	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCTTCATGCGTCATC	NA	False	NA	NA	False	NA	NA	NA	95584143	95590533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95588468_95588809_95588862_95589148_95589513_95590079
24261	chr17	+	3404	17	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	596.614720736926	1	145	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGCGCGTGTCTCGTGG	NA	False	NA	NA	False	NA	NA	NA	71923204	71966020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948395_71949699_71949838_71955785_71955867_71957559_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
24262	chr13	+	2662	3	NIC	ENSMUSG00000058569.9	novel	1420	5	NA	NA	4	-1	intron_retention	FALSE	canonical	3	640	junction_2	7	9	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGAAAAACTGTTCGTG	NA	False	NA	NA	False	NA	NA	NA	55740974	55745499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_55742644_55743280_55743428_55744653
24263	chr4	-	2197	7	NNC	ENSMUSG00000028568.17	novel	624	7	NA	NA	-9	-926	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	515.895149769365	3930	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATATTTCCTCTAGTGC	NA	False	NA	NA	False	NA	NA	NA	108690770	108672417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108688902_108688926_108690704
24264	chr1	+	7163	32	FSM	ENSMUSG00000026640.13	ENSMUST00000027952.12	11040	32	4	3873	4	-1231	multi-exon	TRUE	canonical	1	2	junction_18	4.73677577525654	21	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAGAAGTTGGTCCT	NA	False	NA	NA	False	NA	NA	NA	194302136	194495304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_194302706_194325993_194327256_194331763_194331947_194394491_194394627_194428437_194428539_194431619_194431744_194433683_194433838_194434360_194434458_194436627_194436743_194444706_194444908_194446789_194446887_194449678_194449870_194462820_194462973_194468874_194468993_194471086_194471224_194472028_194472197_194472418_194472513_194476036_194476277_194476680_194476825_194477130_194477366_194479214_194479358_194479847_194480117_194481817_194481885_194482082_194482230_194482808_194482969_194483350_194483455_194487210_194487311_194488589_194488781_194489809_194489980_194492369_194492583_194493164_194493316_194494373
24265	chr8	+	3092	12	NIC	ENSMUSG00000070002.8	novel	457	5	NA	NA	-144	-6	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	42.1565363107432	9	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAACCTCTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	70991962	71045502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70992143_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
24267	chr15	-	2938	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	-32	269	-32	-269	multi-exon	TRUE	canonical	3	365	junction_5	42.5977866628236	540	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTCTGTGTTAAGTTTC	NA	False	NA	NA	False	NA	NA	NA	57755876	57733166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
24269	chr10	-	2899	11	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	138	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGAGGCCCCGCCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	128198332	128173613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173827_128185619_128185665_128186296_128186409_128187066_128187132_128188540_128188673_128188889_128189079_128194200_128194401_128195036_128195175_128195305_128195403_128195810_128196021_128196834
24270	chr16	-	2563	21	Fusion	ENSMUSG00000022771.18_ENSMUSG00000055497.6	novel	3088	20	NA	NA	0	-416	multi-exon	FALSE	canonical	3	6	junction_1	167.198415064258	12	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTGTGTTCTGTGGTGC	NA	False	NA	NA	False	NA	NA	NA	16929096	16900278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_16901193_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
24271	chr11	-	3971	15	NIC	ENSMUSG00000061306.17	novel	4554	16	NA	NA	-12	2	combination_of_known_junctions	FALSE	canonical	3	70	junction_13	135.088576383748	309	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCGAGTCGAGTTGGTTT	5043	False	NA	NA	False	NA	NA	NA	120042125	119995275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120038546_120038665_120041805
24273	chr5	+	896	8	ISM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	156	703	0	-703	5prime_fragment	FALSE	canonical	3	4702	junction_3	266.770481492834	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACGGGAAGGAAGGAGTC	609	False	NA	NA	False	NA	NA	NA	135807489	135818542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479
24275	chr10	-	2640	8	NNC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	-5	3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	183.446928320438	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTTGTCTTACACATTT	NA	False	NA	NA	False	NA	NA	NA	117546595	117524796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531899_117545604_117545690_117545850_117545934_117546456
24276	chr1	+	4582	11	NNC	ENSMUSG00000013275.10	novel	4697	11	NA	NA	56	-29	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	45.2779195635135	1	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAATAAAATGGAAGTTT	5258	False	NA	NA	False	NA	NA	NA	131755770	131776574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131756132_131757778_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287
24278	chr12	+	2290	17	NIC	ENSMUSG00000021177.17	novel	2036	16	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	153.9589915976	27	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	NA	False	NA	NA	NA	99850784	99921478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_99850812_99852736_99852980_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
24279	chr11	-	2985	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	33	859	10	-859	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	3	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTTTTTGATACTGGG	NA	False	NA	NA	False	NA	NA	NA	79853183	79825637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
24280	chr17	+	2367	4	FSM	ENSMUSG00000023902.19	ENSMUST00000115509.8	2368	4	8	-7	2	0	multi-exon	FALSE	canonical	1	2	junction_2	114.030210422014	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	887	False	NA	NA	False	NA	NA	NA	23819837	23829993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_23819934_23824478_23824939_23827081_23827140_23828240
24281	chr3	+	2101	16	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	44	-5826	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	309.356148583904	10	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	NA	False	NA	NA	NA	63883570	63924174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897741_63898042_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
24282	chr9	-	3578	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	52	4	48	-2	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	1	120	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCACCTTGTGTTCCTG	8791	False	NA	NA	False	NA	NA	NA	31123035	31060856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
24283	chr15	+	1830	10	NNC	ENSMUSG00000060992.10	novel	1676	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	422.551801192893	2972	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGTGTGATGGCTC	NA	False	NA	NA	False	NA	NA	NA	103181326	103208292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103206890_103207038_103207119
24284	chr18	+	2447	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	22	11	-7	-4	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	858	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAACTTGTTCACCTGT	NA	False	NA	NA	False	NA	NA	NA	35904632	35940210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
24285	chr6	-	1317	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	115	2	27	-2	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCGTGTGGTTCTGCTGT	8523	False	NA	NA	False	NA	NA	NA	72339300	72336698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
24286	chr6	-	2323	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	66	10	0	-10	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	2	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAAATCATGTTGTTTGC	8956	False	NA	NA	False	NA	NA	NA	47790298	47773084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
24287	chr14	-	2023	7	ISM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	44	15396	-7	-449	5prime_fragment	FALSE	canonical	3	477	junction_1	39.4859327975026	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAAACTCTGCACGGA	NA	False	NA	NA	False	NA	NA	NA	20398145	20385315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
24289	chr13	+	3101	27	ISM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	22156	8	22156	-8	3prime_fragment	FALSE	canonical	3	419	junction_23	59.3544288562536	1	91	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAATCCTTTATTGTG	NA	False	NA	NA	False	NA	NA	NA	18923615	19050973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
24291	chr8	-	4263	18	NIC	ENSMUSG00000061313.11	novel	4246	18	NA	NA	35	0	combination_of_known_junctions	FALSE	canonical	1	18	junction_17	11.4631952042464	108	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGTGGCCTTATCTATC	NA	False	NA	NA	False	NA	NA	NA	26244406	26215372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
24292	chr4	+	3786	9	NNC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	-7	393	intron_retention	FALSE	non_canonical	0	0	junction_4	151.163766739917	1	137	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGAGGAGTCGAAGTGTA	-18	True	NA	NA	False	NA	NA	NA	21848040	21874257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859240_21860842_21860992_21861986_21862178_21865876_21866015_21869515_21871609_21873585
24293	chr4	+	4654	12	FSM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	20	2	20	-2	multi-exon	FALSE	canonical	3	38	junction_3	11.7922793063796	214	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCCAGGGCTGCTTCCTG	177	False	NA	NA	False	NA	NA	NA	133097036	133151011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_133098219_133139147_133139609_133142611_133142863_133143591_133143810_133145210_133145414_133146764_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
24294	chr4	-	1917	6	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	20	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	727.67069475141	11	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTGAGCCTGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	137084990	137047015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048504_137056023_137056117_137056361_137056436_137059717_137059791_137063285_137063441_137084956
24295	chr12	-	3868	12	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-9251	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	37.1632538674499	92	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGCCATCGTATGGATC	NA	False	NA	NA	False	NA	NA	NA	83653247	83593622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83653189
24296	chr11	-	3492	15	NNC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	305.461753175518	1	133	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	95201017	95165084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167275_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172749_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
24298	chr14	+	1736	4	NNC	ENSMUSG00000012405.17	novel	1922	4	NA	NA	-13	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6609.27612442459	34	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGACCTATGTTATCTTTT	NA	False	NA	NA	False	NA	NA	NA	4198712	4201868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_4198738_4199235_4199401_4199732_4199790_4200379
24299	chrUn_JH584304v1	-	2033	6	Intergenic	novelGene_4621	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	111	junction_4	325.957420532192	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAGAGAATGGCCAACAATC	NA	False	NA	NA	False	NA	NA	NA	58965	52201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55249_55464_55702_58563
24300	chr7	-	2332	9	NIC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	76	junction_8	362.098894468072	2856	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACATGTTTTGTGCTTGG	9932	False	NA	NA	False	NA	NA	NA	126461534	126450757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126452164_126452660_126452753_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
24301	chr8	-	1743	7	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	583	-242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	498.33823854888	1	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTGTCTCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	85572872	85568720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571089_85571218_85571413_85571499_85571595_85572490
24302	chr11	+	1618	12	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	-22	134	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	1086.76035358109	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTCTGCCTTTCCCACT	NA	False	NA	NA	False	NA	NA	NA	107370331	107388693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107375545_107375588_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
24303	chr9	+	4356	19	ISM	ENSMUSG00000032280.17	ENSMUST00000162583.8	4299	20	432	2	-21	-2	3prime_fragment	FALSE	canonical	3	95	junction_5	39.6789974609512	290	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGGTTTGATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	61280932	61325766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309340_61310733_61310751_61314635_61314756_61315561_61315613_61316047_61316201_61316556_61316690_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
24305	chr1	-	1519	1	Antisense	novelGene_ENSMUSG00000036104.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTAGAATAGAGTAAGGCA	6188	False	NA	NA	False	NA	NA	NA	127848825	127847306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127847300_127848800
24306	chr6	+	2716	7	NIC	ENSMUSG00000053119.12	novel	998	7	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	177.389167275419	1702	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTGTATATTATGCCT	NA	False	NA	NA	False	NA	NA	NA	71520869	71558560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_71521018_71529382_71529444_71535958_71536113_71537880_71538061_71551098_71551221_71554714_71554830_71556624
24307	chr17	+	1228	2	ISM	ENSMUSG00000039220.17	ENSMUST00000087210.7	4222	19	13603	-2	4305	0	3prime_fragment	FALSE	canonical	3	165	junction_1	0	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGTATGTTTCACTTC	NA	False	NA	NA	False	NA	NA	NA	36241690	36243175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_36241784_36242040
24310	chr6	-	1269	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	0	-79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4019.71419226542	15	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTTTGTTTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	87828062	87820142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820846_87822144_87822303_87822446_87822540_87822637_87822776_87827885
24311	chr1	-	3070	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	212	-1101	7	1101	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	847	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGAAATATGCTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	16689501	16638904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
24312	chr19	+	524	5	NNC	ENSMUSG00000024791.11	novel	2024	6	NA	NA	63	-4393	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	198.198133189998	1	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCCAGCACTCAGAAGG	NA	False	NA	NA	False	NA	NA	NA	6135075	6137414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6137247
24313	chr4	-	1111	10	ISM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	53	1917	31	62	5prime_fragment	FALSE	canonical	3	1463	junction_6	212.967916206487	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATCAAGTGAGTGTGCTG	8861	False	NA	NA	False	NA	NA	NA	129436453	129411813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
24315	chr17	+	2695	6	NNC	ENSMUSG00000023902.19	novel	2609	7	NA	NA	-44	0	intron_retention	FALSE	canonical	0	0	junction_2	103.700723237594	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	835	False	NA	NA	False	NA	NA	NA	23819785	23829993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_23819934_23824478_23824885_23826097_23826363_23826553_23826619_23827081_23827140_23828240
24316	chr13	-	1390	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	41	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311582_34311890_34312515_34312854_34312966_34313228_34313338_34314159
24317	chr11	-	2957	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	64	1783	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	225.665557579244	2	35	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAGCGAAGCAAAAGA	NA	False	NA	NA	False	NA	NA	NA	95896702	95852478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95853341_95854081_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
24318	chr11	+	1943	7	Antisense	novelGene_ENSMUSG00000020516.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCGCCTAGGCCCCAGA	NA	False	NA	NA	False	NA	NA	NA	86406927	86435596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_86408218_86408407_86408466_86410716_86410868_86423598_86423665_86424849_86424973_86426236_86426286_86435390
24319	chr11	+	3359	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	-5	-2	intron_retention	FALSE	non_canonical	0	0	junction_11	214.402408701821	1	159	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788934	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798157_74798278_74798649_74798791_74798871_74798947_74799053
24320	chr1	+	1552	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-351	15	-351	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454096	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
24321	chr8	-	2408	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	122	0	-33	0	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	NA	False	NA	NA	NA	96615053	96590761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
24323	chr13	+	2114	2	Genic_Genomic	ENSMUSG00000113565.2	novel	544	1	NA	NA	-1311	1660	multi-exon	FALSE	canonical	2	3	junction_1	0	23	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATTCTCACAGTACTT	1777	False	NA	NA	False	NA	NA	NA	65705670	65709185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_65705820_65707220
24325	chr7	+	1120	5	FSM	ENSMUSG00000030842.13	ENSMUST00000033131.12	1119	5	-1	0	-1	0	multi-exon	FALSE	canonical	3	733	junction_4	69.0230939613692	3360	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCTGTCCTGCCCACT	7026	False	NA	NA	False	NA	NA	NA	101555109	101561110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479
24326	chr16	+	2406	17	NNC	ENSMUSG00000003235.14	novel	2554	16	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	740.218271757561	1275	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	NA	False	NA	NA	NA	20317619	20328073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20317699_20317793_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
24327	chr19	+	2230	10	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	6	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	126.361132483328	603	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTACTTGATGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	60800039	60824669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263_60823577_60823666
24328	chr19	-	2503	5	NNC	ENSMUSG00000074733.15	novel	2568	4	NA	NA	9	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	20.5060966544099	49	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTTTAAAGTGATATCA	NA	False	NA	NA	False	NA	NA	NA	61129219	61106583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_61107080_61107148_61108891_61115444_61115506_61115875_61116003_61129142
24329	chr2	-	1773	11	NNC	ENSMUSG00000026672.12	novel	697	5	NA	NA	-9003	1542	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.7617148543335	39	18	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCAGGCAGACTTCTT	NA	False	NA	NA	False	NA	NA	NA	5051011	5023910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5024512_5031990_5032056_5032135_5032201_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
24330	chr15	-	4182	10	FSM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	-19	0	-19	0	multi-exon	FALSE	canonical	3	39	junction_5	8.52447456836295	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTGTATGTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	8740267	8663607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045_8738324_8739822
24331	chr15	-	2744	15	FSM	ENSMUSG00000023055.11	ENSMUST00000023818.11	2824	15	80	0	33	0	multi-exon	FALSE	canonical	3	88	junction_14	14.2851785613836	214	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCATGACGTATGTT	NA	False	NA	NA	False	NA	NA	NA	102630533	102615211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
24332	chr10	-	3396	14	NIC	ENSMUSG00000006342.16	novel	3151	15	NA	NA	-15	83	intron_retention	FALSE	canonical	3	52	junction_5	11.6608889610075	17	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCTTCCTCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	75479857	75472456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
24333	chr17	-	2796	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233121.2	2793	8	0	-3	0	3	multi-exon	FALSE	canonical	3	89	junction_1	41.4984632122636	371	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGGGCCTCTCAAATGGT	NA	False	NA	NA	False	NA	NA	NA	47813212	47799203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
24334	chr8	-	2587	5	FSM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	5	-333	2	333	multi-exon	FALSE	canonical	3	55	junction_4	33.7083075813663	235	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGTATGTGCCACCAG	NA	False	NA	NA	False	NA	NA	NA	70078194	70063174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70078085
24335	chrX	+	2938	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115677.8	2943	10	3	2	3	0	multi-exon	FALSE	canonical	3	13	junction_1	93.7669820010234	46	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	7630200	7641438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7630268_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
24336	chr5	+	2052	15	NIC	ENSMUSG00000059447.14	novel	2033	16	NA	NA	-11	-3	intron_retention	FALSE	canonical	3	438	junction_6	60.2271635102451	218	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGAGGACTGTTCGTAGT	NA	False	NA	NA	False	NA	NA	NA	30360289	30389577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
24337	chr3	-	1764	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	4	1802	4	-55	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	5	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCTTCACTGATGACTG	NA	False	NA	NA	False	NA	NA	NA	108352510	108333982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
24338	chr17	-	3734	10	NIC	ENSMUSG00000024096.18	novel	3811	10	NA	NA	-32	-14	combination_of_known_junctions	FALSE	canonical	1	23	junction_9	213.995384743125	199	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAAAAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	66191430	66155426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191216
24339	chr16	-	1664	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	6	108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2042.04350055606	1	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGGCCGTCTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	87292670	87280767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283538_87284489_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288198_87288340_87290594_87290675_87291224_87291316_87292612
24340	chr5	+	1591	6	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-50	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1294.89604215937	137	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATATATTCTCGCTGTG	706	False	NA	NA	False	NA	NA	NA	77099573	77115347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109342_77114524
24341	chr9	+	2499	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	17	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	192.749189362757	9	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCGTGCTGTGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	77824662	77891794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77891407_77891665
24342	chr5	-	2515	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	2	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCGGCGGTGCCCAGCTT	NA	False	NA	NA	False	NA	NA	NA	135963453	135937263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938062_135939065_135940506_135963176
24343	chr2	+	2796	19	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-27	-1642	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	188.90556298954	3	85	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTATGCCCATTTTTTC	7195	False	NA	NA	False	NA	NA	NA	23046502	23087630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083139_23084562_23084656_23084746_23084821_23085333_23085421_23086899
24344	chrX	+	5486	29	NNC	ENSMUSG00000037369.18	novel	5935	29	NA	NA	-7	-419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	62.1546786785408	12	67	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTCTATTGTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	18028868	18145756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074970_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143803_18144864
24345	chr15	+	3351	8	NNC	ENSMUSG00000015002.19	novel	5215	23	NA	NA	10	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	191.041399509453	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTATGTATAAGTGCATTT	NA	False	NA	NA	False	NA	NA	NA	65658906	65745656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_65659096_65687183_65687261_65690281_65690414_65733497_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
24346	chr2	-	3130	23	Intergenic	novelGene_2752	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	27	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAAACAGACCTCACAGT	NA	False	NA	NA	False	NA	NA	NA	156382086	156274940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_156275013_156280501_156280553_156335822_156336013_156336874_156337040_156337777_156337883_156338403_156338449_156341506_156341581_156345562_156345781_156347682_156347772_156348268_156348422_156350729_156350830_156351050_156351226_156352647_156352799_156353701_156353739_156355945_156356129_156366798_156367207_156368806_156368912_156371307_156371390_156375699_156375787_156376604_156376690_156378899_156378978_156379283_156379401_156381726
24348	chr15	+	2447	8	FSM	ENSMUSG00000060992.10	ENSMUST00000230893.2	2438	8	-12	3	-1	-3	multi-exon	FALSE	canonical	3	554	junction_1	184.876351397691	6	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCCTTTGTGTGATGG	NA	False	NA	NA	False	NA	NA	NA	103181326	103208289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313
24350	chr5	+	3578	6	NIC	ENSMUSG00000029131.15	novel	1024	7	NA	NA	-2	0	intron_retention	FALSE	canonical	3	80	junction_5	773.776608589327	29	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGTATTTGGTCAGA	4628	False	NA	NA	False	NA	NA	NA	29941019	29962967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29961337_29962545
24352	chr1	-	1368	11	Antisense	novelGene_ENSMUSG00000006304.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1227	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCCGCCGCCTTACTTGA	NA	False	NA	NA	False	NA	NA	NA	74307368	74275726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_74275767_74275973_74276057_74285236_74285272_74287288_74287402_74290410_74290456_74293983_74294174_74295116_74295209_74301615_74301740_74302896_74302998_74303506_74303613_74306929
24353	chr2	+	2848	10	NIC	ENSMUSG00000039205.17	novel	2604	15	NA	NA	-24	-54	intron_retention	FALSE	canonical	3	47	junction_3	14.7723465374402	6	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCCTCCGCCCAAACGCT	NA	False	NA	NA	False	NA	NA	NA	32253048	32265496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353
24355	chr14	-	2458	10	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	-2	intron_retention	FALSE	canonical	3	278	junction_1	41.3145118437685	157	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAAGTGTGCACCGTTT	NA	False	NA	NA	False	NA	NA	NA	59607998	59586182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59593900_59596924_59597033_59599182_59599305_59607902
24356	chr13	-	1921	13	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2081.09503760774	3	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4756	False	NA	NA	False	NA	NA	NA	58550325	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541631_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
24357	chr2	+	2927	15	NIC	ENSMUSG00000027255.15	novel	3068	16	NA	NA	-46	-19	intron_retention	FALSE	canonical	3	197	junction_10	19.7247642959457	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGGGCCCTGTGGGTCAG	5775	False	NA	NA	False	NA	NA	NA	91095591	91107257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105512_91105620_91105740_91106109
24358	chr14	+	1786	9	ISM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	10929	2778	-2127	1282	3prime_fragment	FALSE	canonical	3	6334	junction_3	508.76191632236	1	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCACGGTTCTGTGCTGCA	224	False	NA	NA	False	NA	NA	NA	63370839	63380594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
24359	chr2	-	4404	2	FSM	ENSMUSG00000026849.19	ENSMUST00000144152.2	560	2	-3459	-385	565	0	multi-exon	FALSE	canonical	3	466	junction_1	0	6	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30857319	30850638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30851210_30853486
24360	chr10	+	2926	4	NNC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	4574	-91	intron_retention	FALSE	non_canonical	0	0	junction_3	157.806491909835	1	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAAGTTTGTTATCTCAC	NA	False	NA	NA	False	NA	NA	NA	83426230	83432246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_83427048_83427552_83427653_83430034_83431742_83431944
24361	chr11	+	1430	7	NIC	ENSMUSG00000007850.17	novel	1724	12	NA	NA	-142	-7	intron_retention	FALSE	canonical	3	385	junction_4	39.3728614939557	1	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTACACTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	50273631	50277347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
24362	chr7	+	1241	10	Intergenic	novelGene_2957	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.942809041582063	1	39	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCGATCAAACCACGTCCC	622	False	NA	NA	False	NA	NA	NA	44188858	44198288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_44188924_44189945_44190056_44190270_44190396_44190921_44190993_44191074_44191246_44191321_44191452_44191530_44191675_44192187_44192305_44192663_44192863_44198179
24364	chr3	-	1943	7	NNC	ENSMUSG00000027506.16	novel	3081	7	NA	NA	-17	164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1236.9164280581	68	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	9069516	8994493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8994943_8995208_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
24365	chr12	+	2044	10	FSM	ENSMUSG00000020608.8	ENSMUST00000218866.2	3373	10	28	1301	-12	-1301	multi-exon	FALSE	canonical	3	624	junction_2	43.5943704599856	118	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAAAGGATTAAATCTT	4588	False	NA	NA	False	NA	NA	NA	11316157	11336354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311
24366	chr12	-	2084	13	NIC	ENSMUSG00000020664.11	novel	2544	14	NA	NA	-16	-285	combination_of_known_splicesites	FALSE	canonical	2	3	junction_5	238.743397232724	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGGTTATTCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	31401468	31381560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
24369	chr13	+	949	2	ISM	ENSMUSG00000021428.10	ENSMUST00000225174.2	2006	3	2604	-116	2604	2	3prime_fragment	FALSE	canonical	3	207	junction_1	0	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGTAGTTTGCATTCTT	NA	False	NA	NA	False	NA	NA	NA	38243794	38245405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_38244069_38244730
24370	chr7	+	3125	22	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	6	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	159.642642306592	1	74	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACACCTAGCTGTTCT	996	False	NA	NA	False	NA	NA	NA	97130225	97190593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134126_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183748_97184347_97184492_97187106_97187228_97190218
24371	chr5	-	2744	5	Antisense	novelGene_ENSMUSG00000066613.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	47	88	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGACAGAGAGCACAGCAT	NA	False	NA	NA	False	NA	NA	NA	110159168	110144446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_110144499_110154808_110154934_110155118_110155181_110156495_110157120_110157287
24372	chr5	-	3612	12	NIC	ENSMUSG00000029434.13	novel	4235	13	NA	NA	-17	-443	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	62.4744575905999	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTCTCAATTTACAC	9975	False	NA	NA	False	NA	NA	NA	123711059	123667164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123669285_123669887_123670057_123671920_123672059_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
24373	chr12	-	2435	25	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-10	-2334	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	446.072202364396	2	77	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299174	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273783_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
24374	chr5	-	1950	5	Antisense	novelGene_ENSMUSG00000029581.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCGCCCGTCGTGGCG	NA	False	NA	NA	False	NA	NA	NA	142958929	142946811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_142947035_142955658_142955817_142955921_142956040_142956268_142956439_142957648
24375	chr11	+	2833	11	NIC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	0	2	intron_retention	TRUE	canonical	3	682	junction_1	151.222518164459	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCAAGGCTCCTTTCCT	1394	False	NA	NA	False	NA	NA	NA	120675100	120679925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
24377	chr5	-	2675	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	0	-1165	0	1164	multi-exon	FALSE	canonical	3	83	junction_5	177.715052823333	819	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAAGTATGTGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	110928481	110920368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
24379	chr7	-	3321	9	NNC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	10.8101514790497	37	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGTCATTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	4448645	4428665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4446735_4446771_4447201_4447321_4447976_4448199_4448412
24380	chr6	-	3021	16	Antisense	novelGene_ENSMUSG00000103899.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	58	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGCCGCGCAAGCGTGCC	NA	False	NA	NA	False	NA	NA	NA	28796972	28480361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_28480641_28512832_28512982_28520141_28520263_28523723_28523805_28526051_28526210_28526903_28526998_28527573_28527734_28528910_28529017_28531405_28531497_28545481_28545595_28626095_28626187_28668554_28668657_28707029_28707143_28724905_28724981_28745182_28745325_28795826
24381	chr13	-	2664	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	58	5	-21	0	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	908	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	54713190	54699035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
24382	chr3	+	3735	9	NNC	ENSMUSG00000036580.16	novel	3770	9	NA	NA	-685	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	74.7228211458855	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCTCAGATGTATTCACT	NA	False	NA	NA	False	NA	NA	NA	55022912	55044739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_55022992_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
24384	chr3	+	1925	13	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	968.746050171159	1	54	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCGTTGTCATGTGTTT	3827	False	NA	NA	False	NA	NA	NA	88204445	88229072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206714_88208106_88208158_88210041_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
24385	chr19	-	5203	9	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	-1	3213	intron_retention	FALSE	canonical	3	13	junction_8	105.606507256892	266	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATACAGTGTATCTTGAT	9775	False	NA	NA	False	NA	NA	NA	60215127	60183804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214741
24386	chr14	-	2539	8	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-99	0	intron_retention	FALSE	canonical	3	2964	junction_1	110.913645394486	60	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63746304	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
24388	chr17	-	1839	8	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	3784	-1032	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	298.806605942877	3	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	NA	False	NA	NA	False	NA	NA	NA	24456073	24442203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443238_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054
24390	chr8	+	2287	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	80	1105	-7	-1105	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	2	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATGGCTTGTGGCTCAA	1899	False	NA	NA	False	NA	NA	NA	106937647	106978321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
24391	chr2	+	2227	19	NNC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	4357	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	193.059936001463	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGTTGTCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	166861586	166876867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866369_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
24392	chr7	+	4517	24	NNC	ENSMUSG00000052707.9	novel	8183	24	NA	NA	6	568	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_23	41.1396717268388	6	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGCTCAACATTAATTGT	NA	False	NA	NA	False	NA	NA	NA	122723409	122793778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_122723556_122723890_122723939_122742972_122743061_122751386_122751409_122761716_122762101_122772455_122772633_122773366_122773543_122774648_122774682_122776046_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780541_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789067_122789290_122790722_122790794_122791281_122791422_122791801_122792152_122792487
24393	chr7	-	2255	11	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	348	junction_8	50.8948916886557	9	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGACTCCTGACTGACTG	NA	False	NA	NA	False	NA	NA	NA	125976586	125969244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973246_125974238_125974376_125975845_125975912_125976008
24394	chr19	-	2212	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	-4	-279	-4	279	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	762	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAACTGTGTTAATTT	NA	False	NA	NA	False	NA	NA	NA	24938969	24897000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
24395	chr14	+	1724	9	ISM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	10976	2793	-2080	1267	3prime_fragment	FALSE	canonical	3	6334	junction_3	508.76191632236	2	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACATTGGCAGGGTGCA	271	False	NA	NA	False	NA	NA	NA	63370886	63380579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
24396	chrX	+	2594	15	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	959.636517071938	2	107	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	-58	True	NA	NA	NA	74139666	74153381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140502_74140885_74140976_74142067_74142160_74142368_74142550_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151778_74151911_74152301
24397	chr12	+	2362	11	ISM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	1768	5	-585	2	3prime_fragment	FALSE	canonical	3	389	junction_10	321.856427619521	1523	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCATCAGGGAATGTTT	NA	False	NA	NA	False	NA	NA	NA	17596562	17601080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_17597195_17597283_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
24398	chr7	-	2060	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	94	17	4	-17	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	4	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACCCTTTTGTCTCACT	NA	False	NA	NA	False	NA	NA	NA	117728791	117718130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
24399	chr15	-	1593	11	ISM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	8549	1361	-709	343	3prime_fragment	FALSE	canonical	3	2899	junction_10	116.458962729367	4	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGACCTCTGTCCTCA	8477	False	NA	-26	True	NA	NA	NA	11391202	11383747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146
24400	chr15	+	1368	11	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	179	5245	4	-275	5prime_fragment	FALSE	canonical	3	1727	junction_10	116.36670486011	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTTGCATCGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	81756688	81794089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042
24401	chr17	+	2815	11	NIC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	8	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	172.153884649752	572	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATATTGCTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	26780526	26875903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26873800_26873928_26874040
24403	chrX	-	1198	11	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-350	0	combination_of_known_junctions	TRUE	canonical	3	1072	junction_10	149.586229312728	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72826324	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280
24404	chrX	-	2681	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	15	-30	15	0	multi-exon	FALSE	canonical	3	379	junction_1	0	484	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGACTGCGCTTACACA	NA	False	NA	NA	False	NA	NA	NA	98514326	98509343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_98511921_98514222
24405	chr10	+	282	2	NNC	ENSMUSG00000020022.18	novel	428	3	NA	NA	4	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	151	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAATTGTTTGACCTAG	NA	False	NA	NA	False	NA	NA	NA	94034902	94056792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_94034993_94056600
24406	chr13	-	2896	3	FSM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	119	-2	-19	2	multi-exon	FALSE	canonical	3	1082	junction_1	15.5	3015	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTTGAGTTTTTAATGT	NA	False	NA	NA	False	NA	NA	NA	14787631	14782766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_14785326_14786007_14786190_14787476
24408	chr6	-	3319	23	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	5	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	184.927884090122	4	102	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTAAGCATCCTGTCCT	3498	False	NA	NA	False	NA	NA	NA	125168561	125144977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148495_125154272_125154516_125154771_125154888_125156200_125156370_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
24409	chr10	+	3402	15	FSM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	-1	-1104	-1	-1	multi-exon	TRUE	canonical	1	267	junction_3	142.059218034492	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGCGTGCCTTCTGACTG	NA	False	NA	NA	False	NA	NA	NA	82695039	82733543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
24411	chr9	+	2905	2	Antisense	novelGene_ENSMUSG00000039952.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAACCCACCACAGGATAA	2829	False	NA	NA	False	NA	NA	NA	108083301	108086253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108084514_108084560
24412	chr7	+	2395	23	NNC	ENSMUSG00000030982.20	novel	608	9	NA	NA	8705	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	122.1266785753	3	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGCAGTGTCTCGGTGTG	NA	False	NA	NA	False	NA	NA	NA	118372051	118440710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118372146_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
24413	chr17	+	3650	5	NIC	ENSMUSG00000007603.10	novel	2749	10	NA	NA	-6	-77	intron_retention	FALSE	canonical	3	256	junction_1	24.1971072651257	18	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTCGTCTTCCTGCCCAA	9238	False	NA	NA	False	NA	NA	NA	57071771	57076763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57072793_57073781_57074675_57074782_57074936_57075033_57075903_57076049
24414	chr17	+	3367	19	NIC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	-2	-395	intron_retention	FALSE	canonical	0	0	junction_13	49.5224416019871	2	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACGAGGACCACCCAGGACA	NA	False	NA	NA	False	NA	NA	NA	45817764	45831374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825820_45826170_45826210_45826325_45826438_45826870_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
24415	chr14	+	2940	19	NNC	ENSMUSG00000022064.11	novel	2797	18	NA	NA	-22	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	38.0946271445719	1	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACTGTAGAGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	99337320	99491930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99477583_99477704_99480274_99480446_99491596
24416	chr11	-	2739	16	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	10	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	690.077953728579	1	117	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAAGCTTTGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	75239109	75191232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75205598_75205742_75206930_75207064_75209237_75209332_75219494_75219588_75231115_75231225_75231858_75231933_75232969_75233021_75239051
24417	chr14	-	2501	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-43	730	-23	2	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	1	100	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTATTGCTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	36857252	36842778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
24418	chr11	+	3364	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	23	2	3	-2	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	1	137	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788926	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
24419	chr9	-	2881	3	NIC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	-2	6	intron_retention	FALSE	canonical	3	1351	junction_2	56.5	14	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGAAAATACATTGTACT	NA	False	NA	NA	False	NA	NA	NA	50515114	50507650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50508551_50510060_50511965_50515037
24420	chr13	+	3886	22	NIC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	23	-16	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	74.4260579047291	2	89	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTCTTGCTACCATACC	NA	False	NA	NA	False	NA	NA	NA	35059509	35090031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077299_35077406_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35085657_35085980_35086115_35086612_35086659_35087169_35087257_35087512_35087586_35088026_35088073_35089865
24421	chr2	-	3954	3	FSM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	23	0	4	0	multi-exon	FALSE	canonical	3	47	junction_1	10.5	179	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGTATCCTTTTTACT	NA	False	NA	NA	False	NA	NA	NA	140513366	140500117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_140503672_140505180_140505380_140513165
24422	chr16	+	1797	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	295	116	-15	-99	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTAAGCCTCAGCAAGC	6034	False	NA	NA	False	NA	NA	NA	22926488	22932581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
24423	chr6	-	2569	7	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	-38	0	intron_retention	FALSE	non_canonical	0	0	junction_6	303.338873575779	2	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	NA	False	NA	NA	NA	72416579	72409781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413441_72416328
24424	chr15	-	4011	4	NNC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	2	194	intron_retention	FALSE	canonical	1	1	junction_1	21.6384431561566	19	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAAACTGTTGTGAAGT	247	False	NA	NA	False	NA	NA	NA	83251481	83237853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83240052_83242114_83243152_83249229_83249715_83251190
24425	chr8	+	2725	6	NIC	ENSMUSG00000031799.11	novel	2158	8	NA	NA	3	-6	intron_retention	FALSE	canonical	3	688	junction_1	40.9360476841622	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAATGTGTCTGGATTTA	NA	False	NA	NA	False	NA	NA	NA	72889104	72906978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72901112_72905585
24427	chr18	+	2900	19	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-46	-4	intron_retention	FALSE	non_canonical	0	0	junction_14	403.463064535584	2	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTGGATTCCAAATT	6203	False	NA	NA	False	NA	NA	NA	34758013	34765853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760899_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761943_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763471_34763568_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
24428	chr9	+	1513	3	NNC	ENSMUSG00000032607.13	novel	651	4	NA	NA	7	2	intron_retention	FALSE	non_canonical	0	0	junction_1	0	45	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTCTAGCTTCCTTGTT	NA	False	NA	NA	False	NA	NA	NA	108174127	108179503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174530_108175939_108176593_108179045
24429	chr2	-	4594	11	NNC	ENSMUSG00000061411.13	novel	6399	11	NA	NA	8888	-1644	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	30.6339680746716	12	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTCCTGCAGCCACTGC	NA	False	NA	NA	False	NA	NA	NA	153363003	153251029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_153253750_153258563_153258766_153259282_153259406_153259607_153259800_153259879_153260066_153262451_153262730_153278125_153278268_153312607_153312718_153319790_153319903_153325606_153325763_153362630
24430	chr8	+	4603	32	NNC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.4250853209897	110	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCAATGTCTGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	86567621	86787270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_86567728_86569649_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
24433	chr17	+	3925	7	NIC	ENSMUSG00000068036.17	novel	5418	32	NA	NA	2703	-4	combination_of_known_junctions	FALSE	canonical	3	34	junction_5	135.555339253015	190	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCTTCCTTTGTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	14104850	14126052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119721_14122791_14122877_14124115
24434	chr1	-	2016	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	-12	10	4	-10	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	1229	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAGGTACGATCAGCAC	NA	False	NA	NA	False	NA	NA	NA	16727120	16711958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
24435	chr7	-	2209	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-30	0	intron_retention	FALSE	canonical	3	712	junction_7	45.9422191453569	1625	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAGCCTGGTTTTTGA	7957	False	NA	NA	False	NA	NA	NA	126641611	126626902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
24436	chr18	-	2557	13	NNC	ENSMUSG00000044252.19	novel	2893	13	NA	NA	49	-1	intron_retention	FALSE	canonical	0	0	junction_10	132.341388293895	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTGAATGCTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	12995431	12888385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921372_12921453_12952561_12952719_12995163
24438	chr11	-	3806	8	NIC	ENSMUSG00000049659.16	novel	3998	9	NA	NA	58	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	57.7033228626199	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAATTTAGCCTTTTGT	9318	False	NA	NA	False	NA	NA	NA	20691531	20635090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680_20658738_20662163_20662316_20675684_20677640_20691305
24440	chr7	+	1113	3	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	720	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATCGCTGGGTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	110671138	110673409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673243
24441	chr16	+	2243	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	158	247	113	-247	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCCCTCCACAGTGGA	NA	False	NA	NA	False	NA	NA	NA	4502091	4525312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
24442	chr1	-	3095	7	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	2	1094	combination_of_known_junctions	FALSE	canonical	2	15	junction_3	192.825842551136	792	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGCATATGAAATATGC	NA	False	NA	NA	False	NA	NA	NA	16689481	16638911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16641507_16652150_16652227_16655499_16655656_16656309_16656362_16668174_16668278_16672485_16672578_16689460
24443	chr2	-	3438	3	FSM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	63	5	-36	-5	multi-exon	FALSE	canonical	3	168	junction_1	2.5	104	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTGTCTGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	26800626	26795278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26798314_26799004_26799086_26800304
24444	chr2	-	4628	10	NIC	ENSMUSG00000026707.16	novel	3149	12	NA	NA	-14	0	intron_retention	FALSE	canonical	3	48	junction_2	8.45905169363301	36	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTGAAAAATATCAT	964	False	NA	NA	False	NA	NA	NA	15054105	14999941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
24446	chr11	-	2479	3	NIC	ENSMUSG00000085156.9	novel	611	4	NA	NA	-10	-9	intron_retention	FALSE	canonical	3	436	junction_2	5	308	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGACTCCAGCTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	6478789	6475600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6475818_6476354_6478375_6478547
24447	chr2	-	943	5	Antisense	novelGene_ENSMUSG00000001403.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	244	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGCGTTTGAATTGCAAC	NA	False	NA	NA	False	NA	NA	NA	164614815	164611832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_164612002_164613182_164613300_164613773_164613977_164614084_164614144_164614420
24448	chr16	+	4020	20	NIC	ENSMUSG00000022761.13	novel	3394	21	NA	NA	-2	0	intron_retention	FALSE	canonical	2	77	junction_5	14.8819919436387	5	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	17326834	17344197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
24449	chr1	-	6171	31	NNC	ENSMUSG00000026024.15	novel	6342	34	NA	NA	1052	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	42.5070059584953	1	263	19	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGAAGCTGTTCTATGACT	NA	False	NA	NA	False	NA	NA	NA	59257233	59202090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59209003_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224548_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231273_59235345_59235531_59238178_59238351_59242073_59242280_59245702_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085
24450	chr10	+	2278	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	16	0	13	0	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGATTTCTTTGTTTTGT	1307	False	NA	NA	False	NA	NA	NA	77417569	77434566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
24451	chr11	+	1396	10	NIC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	5	0	intron_retention	FALSE	canonical	3	2392	junction_7	156.761673320433	11	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4541	False	NA	NA	False	NA	NA	NA	106146984	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
24452	chr17	-	2978	16	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	178	-1037	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	289.00229910658	1	102	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAATATTACTGTGCTTCA	9248	False	NA	NA	False	NA	NA	NA	24468368	24442208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445444_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462248_24462321_24463453_24463561_24468224
24453	chr16	+	1922	14	FSM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	0	0	0	0	multi-exon	FALSE	canonical	3	827	junction_1	52.2487224157954	1984	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4366	False	NA	NA	False	NA	NA	NA	93680788	93703003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
24454	chr4	+	2040	21	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	202.872244281962	24	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTAGTAGTGTGTTTT	17	True	NA	NA	False	NA	NA	NA	34614985	34660167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_34615027_34616524_34616726_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
24455	chr19	+	2985	6	NIC	ENSMUSG00000024835.16	novel	1709	10	NA	NA	0	-14	intron_retention	FALSE	canonical	3	159	junction_1	179.866172472758	1	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTTTCTAAAGCCAGGTT	3610	False	NA	NA	False	NA	NA	NA	4198652	4204018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4198722_4199340_4199544_4199861_4200826_4201393_4201499_4201578_4201725_4202520
24456	chr18	-	2269	10	NNC	ENSMUSG00000118030.2	novel	363	2	NA	NA	7243	6933	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTCCATTGATATGTTGA	NA	False	NA	NA	False	NA	NA	NA	35724383	35710638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35710647_35714220_35714347_35714647_35714771_35714966_35715137_35715765_35715900_35716929_35716974_35717566_35717935_35720683_35720906_35721383_35721505_35723430
24457	chr10	-	2879	15	NNC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	-5	-1878	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	177.741571745415	1	92	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGGATCTGCCTATCTT	NA	False	NA	NA	False	NA	NA	NA	62438065	62417907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425737_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
24459	chr2	+	2869	11	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	2	-441	intron_retention	FALSE	canonical	1	1	junction_4	311.780836486145	2	43	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164675728	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164675771_164675949_164677232_164677549_164677642_164678346_164678793_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
24460	chr16	-	2623	10	NNC	ENSMUSG00000044626.14	novel	3923	10	NA	NA	3	477	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	85.0077701604643	2	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGCCTGTTAGAGGAATT	NA	False	NA	NA	False	NA	NA	NA	21814198	21773659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21790064_21790182_21792807_21792898_21794982_21795085_21802650_21803019_21814070
24461	chr4	-	4025	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	72	22	72	-22	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	1	178	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATATATTTTCACTATCA	NA	False	NA	NA	False	NA	NA	NA	135000053	134941301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
24463	chr12	+	1530	11	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-3426	-395	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	882.166537565328	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAATGTATGAAATTAGT	NA	False	NA	NA	False	NA	NA	NA	17320416	17334376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330961_17331071_17333200_17333298_17333938
24464	chr19	+	4054	21	NNC	ENSMUSG00000024892.18	novel	4148	21	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	23.1788696877134	133	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACCCTAGTGACAGTGTG	1731	False	NA	NA	False	NA	NA	NA	4560543	4671727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4560610_4565681_4565719_4651627_4651764_4651892_4652078_4652237_4652404_4652501_4652648_4652785_4652904_4653087_4653240_4654489_4654612_4657559_4657723_4659891_4660075_4667607_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670644_4670847_4670989_4671067
24465	chr12	-	3980	15	NNC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	105.162095483737	1	160	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTCTGGGTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	65219355	65179506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208276_65208314_65208803_65219222
24467	chrX	+	1169	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	97	-56	97	56	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068906	13070075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068900_13070100
24468	chr18	-	2588	10	Intergenic	novelGene_4549	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATGGCCTCCGCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	57523648	57487834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_57487961_57495501_57495620_57496145_57496535_57498257_57498420_57504436_57504542_57507598_57507756_57514690_57514804_57517245_57517347_57522289_57523537_57523578
24469	chr2	-	1340	8	NIC	ENSMUSG00000009566.13	novel	2273	15	NA	NA	-4	-155	intron_retention	FALSE	canonical	3	317	junction_2	39.1678752165546	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACACCCTACAGACATCCA	NA	False	NA	NA	False	NA	NA	NA	32584151	32576668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32576898_32577156_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
24470	chr5	+	2170	2	Antisense	novelGene_ENSMUSG00000105987.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTATTTTGAGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	23903721	23915783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_23905464_23915355
24471	chr5	-	3728	21	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	29	-1974	at_least_one_novel_splicesite	FALSE	non_canonical	3	29	junction_20	170.123896028747	228	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGAATTGGGTGATTAT	NA	False	NA	NA	False	NA	NA	NA	27996660	27947051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_27947498_27949108_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996456
24474	chr3	-	2599	7	NNC	ENSMUSG00000104231.2	novel	373	2	NA	NA	-8172	-55	intron_retention	TRUE	non_canonical	0	0	junction_1	0	5	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCCCATTTTAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	32574665	32566006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32567340_32568530_32568604_32569432_32569494_32571170_32571287_32573256_32573391_32573677_32573855_32573960
24475	chr11	-	2143	13	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	0	53	intron_retention	FALSE	canonical	3	831	junction_12	105.792905664269	829	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCACATGTTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	96807240	96798588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
24476	chr16	-	1746	15	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	18	113	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	1309.6116888262	2	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292658	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288185_87288340_87290594_87290675_87291224_87291316_87292616
24477	chr8	-	1104	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-73	-77	-73	77	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592503	103591399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592500
24478	chr4	+	2500	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	284	13	284	-13	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	2	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTCTCAGATGATC	5332	False	NA	NA	False	NA	NA	NA	89055642	89099305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
24479	chr2	+	2719	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	-2	613	-2	-613	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTTTTGTATCATACAA	NA	False	NA	NA	False	NA	NA	NA	62494626	62523840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
24481	chr15	+	2641	12	ISM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	107	0	12	0	3prime_fragment	FALSE	canonical	3	579	junction_8	65.7397825389198	1385	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGCACTTTTCAGTAT	NA	False	NA	NA	False	NA	NA	NA	81900676	81924286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
24482	chr8	-	1836	8	NIC	ENSMUSG00000031701.7	novel	2919	9	NA	NA	6	-996	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	274.820163832605	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTGTGTCACATTTTT	NA	False	NA	NA	False	NA	NA	NA	86281967	86265257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86279815_86280040_86280545_86280606_86281798
24483	chr16	+	2430	13	NIC	ENSMUSG00000022945.13	novel	1922	14	NA	NA	-11	-8	intron_retention	FALSE	canonical	3	827	junction_1	51.3717388800063	35	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACATAGAAAAAGTGTGTG	4378	False	NA	NA	False	NA	NA	NA	93680800	93702990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
24484	chr2	+	3764	12	Intergenic	novelGene_2740	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAACCCTACTCAGAGGG	9427	False	NA	NA	False	NA	NA	NA	153251039	153363002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_153252987_153253535_153253752_153258564_153258765_153259281_153259406_153259607_153259800_153259879_153260066_153262469_153262730_153278125_153278272_153312610_153312718_153319790_153319903_153325606_153325765_153362886
24485	chr8	+	2689	22	NNC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	16574	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	149.772525931192	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTATTACCTGTTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	108179621	108283840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276778_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
24486	chr15	-	1947	12	NIC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	546.94757782859	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGAAGTCCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	75952768	75942039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75951218_75951339_75952698
24487	chr8	-	2303	9	Antisense	novelGene_ENSMUSG00000031864.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	13	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAAGTGGCACTTGCTG	NA	False	NA	NA	False	NA	NA	NA	69281291	69262926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69263383_69264558_69264644_69266215_69266371_69266908_69267016_69271937_69272018_69273304_69273470_69274808_69274903_69279928_69280808_69281009
24488	chr16	-	3252	20	FSM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	30	0	-17	0	multi-exon	FALSE	canonical	3	251	junction_3	29.6569490345649	432	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1977	False	NA	NA	False	NA	NA	NA	15964685	15707087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
24489	chr11	+	3833	10	Antisense	novelGene_ENSMUSG00000092509.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGCAAGAAAGCAGCCAG	NA	False	NA	NA	False	NA	NA	NA	100239681	100247031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100242127_100242242_100242379_100242668_100242734_100243012_100243142_100244369_100244436_100244512_100244614_100244782_100244960_100245067_100245189_100245497_100245575_100246515
24491	chr5	-	2586	8	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_7	355.117974073693	2112	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
24492	chr8	-	2086	9	FSM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	52	2221	-41	536	multi-exon	FALSE	canonical	3	1341	junction_8	171.134997881789	66	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGAGATTATCCTTGGCC	NA	False	NA	NA	False	NA	NA	NA	95564934	95548652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
24493	chrX	+	1650	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	25	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1851.37651762142	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGAAGTTTTTCCTGTCA	NA	False	NA	NA	False	NA	NA	NA	105230730	105247298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238070_105238272_105238383_105240448_105240493_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
24495	chr11	+	3955	4	FSM	ENSMUSG00000046311.14	ENSMUST00000109198.8	3872	4	149	-232	-44	-24	multi-exon	FALSE	canonical	3	79	junction_1	17.4547032821147	192	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGTGACTTGTTTTAG	1315	False	NA	NA	False	NA	NA	NA	49094267	49109612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_49094366_49103521_49103604_49104416_49104470_49105890
24496	chr7	+	2725	1	NIC	ENSMUSG00000059070.17	novel	2989	7	NA	NA	5	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	46	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	5955	False	NA	NA	False	NA	NA	NA	45367527	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45367500_45370300
24497	chr7	-	3767	10	NIC	ENSMUSG00000030846.16	novel	2319	13	NA	NA	-8	-5	intron_retention	FALSE	canonical	3	185	junction_9	22.6525010201773	51	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATTCTGACTATAAATT	NA	False	NA	NA	False	NA	NA	NA	128063087	128044008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
24498	chr19	-	3145	21	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-1	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	627.784509206782	1	159	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAAATCTCAATTGTT	3912	False	NA	NA	False	NA	NA	NA	5345437	5323984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329976_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341447_5343107_5343348_5344326_5344405_5345068_5345116_5345289
24499	chr10	-	3161	15	NNC	ENSMUSG00000038446.9	novel	3534	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.1314513986525	10	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	NA	False	NA	NA	NA	40759089	40707616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40708707_40708757_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723948_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
24500	chr8	-	1757	5	NNC	ENSMUSG00000051176.7	novel	1744	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1833.10738569785	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760028	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749173_43749261_43749574_43753664_43753751_43758844_43758980_43759877
24501	chr9	+	2089	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	192.749189362757	38	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	77824697	77891801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77890999_77891639
24502	chr3	-	2278	17	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	203.174638165668	3	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95657650_95657730_95658018_95658078_95658149_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
24504	chr2	+	2580	12	ISM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	348	313	231	-313	3prime_fragment	FALSE	canonical	3	410	junction_1	50.7055998015966	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTTTCATGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	25162837	25175614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
24505	chr17	+	1826	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	-92	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	1625	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313281	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320310
24506	chr5	+	2485	6	NIC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	5956	junction_2	211.095807632459	8	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_104583063_104584240_104584309_104584406_104585602_104586091_104586134_104587130_104587413_104588094
24507	chr11	-	5201	12	FSM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	-18	1	-18	-1	multi-exon	FALSE	canonical	3	85	junction_7	13.0123907891512	92	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGGTATCCAGCATTT	NA	False	NA	NA	False	NA	NA	NA	70895281	70874917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70878254_70879892_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682_70884843_70885964_70886077_70886713_70886900_70890195_70890367_70890546_70890775_70892344_70892506_70894942
24509	chr19	+	2304	16	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	157	junction_2	153.826684580046	763	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTTGCTTTGCCGTTA	NA	False	NA	NA	False	NA	NA	NA	45352189	45517736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_45352326_45394983_45395026_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
24510	chr6	+	2938	24	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	255.977743006953	1	108	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTCTCTTAATATTTA	NA	False	NA	NA	False	NA	NA	NA	87864909	87889498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881915_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
24511	chr6	+	2783	3	FSM	ENSMUSG00000068328.11	ENSMUST00000204761.3	620	3	-4	-2159	-2	-2	multi-exon	FALSE	canonical	3	1074	junction_2	27	21	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCAAGGTCTCTGTTGC	5426	False	NA	NA	False	NA	NA	NA	83031714	83034655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83031814_83031891_83032030_83032109
24512	chr2	+	1770	10	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	93.1034205256727	223	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	80	False	NA	NA	False	NA	NA	NA	13579121	13587636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579696_13579758_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
24513	chr3	-	2951	5	NNC	ENSMUSG00000052544.10	novel	8169	5	NA	NA	245	1885	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	48.9917084821503	205	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAAAATTTCAATGTGAG	NA	False	NA	NA	False	NA	NA	NA	153215134	152909117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_152911229_152912254_152912365_152931338_152931464_153117098_153117509_153214939
24514	chr17	+	2232	3	NIC	ENSMUSG00000037805.16	novel	901	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	8416	junction_2	258	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	28547556	28550001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_28547860_28547940_28549672_28549803
24515	chr17	+	3771	24	NNC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	-4	61	intron_retention	FALSE	canonical	0	0	junction_19	52.0755957705548	1	101	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTCTCCGTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	66430546	66458445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455095_66455654_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
24516	chr2	-	1417	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	0	-944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	4169.46393510879	5	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAAACTTGATTCCTGG	3759	False	NA	NA	False	NA	NA	NA	154734728	154714281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730196_154730241_154730281_154734609
24517	chr7	+	2523	15	NNC	ENSMUSG00000038943.17	novel	3026	14	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	334.815186608483	1	88	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	NA	False	NA	NA	NA	79944228	79966007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861_79965395_79965866
24519	chr2	+	4304	12	NIC	ENSMUSG00000033411.17	novel	3543	13	NA	NA	-10	0	intron_retention	FALSE	canonical	3	16	junction_2	114.335521909195	1	124	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGCTCTTTCTCAAAAT	NA	False	NA	NA	False	NA	NA	NA	121786930	121843096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_121787099_121799550_121799761_121807815_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121838298_121841043
24520	chr2	+	2371	13	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-2	-438	intron_retention	FALSE	canonical	1	1	junction_6	290.062924207835	8	33	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	164675732	164681501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164675771_164675949_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678793_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
24521	chr4	-	1759	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	6	0	6	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	5	True	NA	NA	False	NA	NA	NA	41098177	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
24522	chr5	+	2510	9	NIC	ENSMUSG00000029131.15	novel	2918	10	NA	NA	-1	-17	combination_of_known_splicesites	FALSE	canonical	3	27	junction_1	736.838591127663	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTTATACATTTATT	4594	False	NA	NA	False	NA	NA	NA	29940985	29991459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_29941115_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
24525	chr1	-	2711	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	102	88	102	-88	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	25	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTTTGTTGGGGTTTTT	9098	False	NA	NA	False	NA	NA	NA	171910260	171893667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
24526	chr13	+	789	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	-23	29	-23	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	14	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAACCGCCAGTCCAAGAA	NA	False	NA	NA	False	NA	NA	NA	108807113	108807902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108807100_108807900
24527	chr14	-	3389	6	Antisense	novelGene_ENSMUSG00000021737.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGGAGTCGTCACAGGTT	9727	False	NA	NA	False	NA	NA	NA	8357562	8348819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_8349775_8352790_8352937_8353157_8353378_8353502_8353613_8355468_8357243_8357378
24528	chr1	+	2034	6	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	183	0	intron_retention	FALSE	canonical	3	1206	junction_1	1596.73511892236	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862940	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
24529	chr10	-	2665	8	NIC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	22	104	intron_retention	FALSE	canonical	3	625	junction_7	508.403302868251	1	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGAATTTGTAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	127358211	127353497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356976_127358156
24531	chr4	-	1877	3	FSM	ENSMUSG00000028495.15	ENSMUST00000130001.2	639	3	-39	-1199	-17	-3	multi-exon	FALSE	canonical	3	19365	junction_2	2491.5	73	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGCTTTCATTAATAG	NA	False	NA	NA	False	NA	NA	NA	86775608	86772899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_86774594_86774964_86775097_86775557
24532	chr5	+	3657	17	NNC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	23.9736183126369	112	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGGCGCGGTGTCTTCTG	8690	False	NA	NA	False	NA	NA	NA	142449798	142464468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456193_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
24533	chrX	+	3386	12	FSM	ENSMUSG00000000881.13	ENSMUST00000151020.8	3316	12	-68	-2	-68	0	multi-exon	FALSE	canonical	3	72	junction_1	11.5078126534158	155	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGGCTCAGAGGTCTTCT	631	False	NA	NA	False	NA	NA	NA	99820822	99862016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99820979_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
24534	chr7	+	3991	6	NNC	ENSMUSG00000074165.11	novel	813	6	NA	NA	-3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	19.2520128817742	49	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAACAAAAGTGTTCAC	NA	False	NA	NA	False	NA	NA	NA	41282976	41300946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_41283119_41284103_41284324_41292756_41292857_41296903_41297042_41297242_41297304_41297616
24535	chr1	-	2409	7	NNC	ENSMUSG00000026374.15	novel	7063	6	NA	NA	49	1116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	478.855493163996	1019	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTCTCTTTGTAAAGTA	NA	False	NA	NA	False	NA	NA	NA	118238917	118226263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_118226457_118227125_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
24536	chr7	+	1773	8	FSM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	-53	-12	-23	2	multi-exon	FALSE	canonical	3	214	junction_1	29.0537854500854	1453	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATCAGCTTGCTGACA	NA	False	NA	NA	False	NA	NA	NA	141047281	141051388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
24537	chr5	-	2044	13	NNC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	277	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	252.85243555613	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	22755025	22691486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729710_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22751395_22751597_22752921_22753015_22754928
24538	chr12	+	1948	15	NIC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	10	-1533	combination_of_known_junctions	TRUE	canonical	3	11	junction_7	165.434569962797	1	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTTATTATAACATCTG	3996	False	NA	NA	False	NA	NA	NA	83679040	83719658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83698419_83698525_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507
24539	chr17	-	2186	17	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	626.847466369411	1	29	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5756	False	NA	NA	False	NA	NA	NA	33904377	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33868604_33868774_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
24540	chr1	-	2848	15	Antisense	novelGene_ENSMUSG00000102970.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	29	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGGTCTCGCGGATTT	8329	False	NA	NA	False	NA	NA	NA	191354788	191307898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_191308062_191314508_191314640_191315289_191315441_191318637_191318774_191326538_191326584_191328280_191328483_191328996_191329126_191334360_191334474_191336917_191337052_191338230_191338329_191339929_191340171_191342474_191342613_191343968_191344176_191345125_191345256_191353958
24542	chr17	-	2093	15	Antisense	novelGene_ENSMUSG00000007564.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	61	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAATCCGGGATCGGGCG	NA	False	NA	NA	False	NA	NA	NA	21186079	21165725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21165844_21171602_21171694_21174874_21174975_21176047_21176284_21176970_21177113_21177216_21177373_21178979_21179053_21179196_21179263_21179662_21179784_21180725_21180902_21181214_21181270_21181839_21182002_21182835_21182976_21185497_21185593_21185717
24543	chrX	-	2427	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	2	0	2	0	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	299	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	69520784	69503358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
24544	chr2	+	3396	23	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	68	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	174.760976079703	18	110	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTGTTGCTGGCAATT	NA	False	NA	NA	False	NA	NA	NA	118428759	118472070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445480_118445962_118446017_118448186_118448417_118452615_118452709_118453547_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
24545	chr1	-	3850	15	FSM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	108	0	7	0	multi-exon	FALSE	canonical	3	234	junction_7	31.7753594690564	165	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAGGAAATTTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	33853500	33800625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_33801291_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
24546	chr17	+	1889	12	ISM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	10487	46	-779	-35	3prime_fragment	FALSE	canonical	3	1238	junction_7	81.051152096675	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTACTGTACACGGAGAAAT	NA	False	NA	NA	False	NA	NA	NA	21176059	21186132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
24548	chr11	+	3075	8	NIC	ENSMUSG00000001100.11	novel	2054	11	NA	NA	56	-6	intron_retention	FALSE	canonical	3	1074	junction_6	56.3882315120915	6	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTCCTTCTGAGTATTGT	1691	False	NA	NA	False	NA	NA	NA	78403074	78413556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78410132_78411977_78412058_78412619
24549	chr9	+	2170	9	NIC	ENSMUSG00000010048.11	novel	2054	11	NA	NA	25	-4	intron_retention	FALSE	canonical	3	631	junction_8	36.1539676245914	15	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGTGGCCTTTATCCTG	NA	False	NA	NA	False	NA	NA	NA	107464980	107470233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107465146_107467101_107467222_107467307_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469571_107469673
24550	chr2	-	461	1	ISM	ENSMUSG00000043909.17	ENSMUST00000110647.8	9405	27	76024	19	9664	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGACTTCAATTATGAT	NA	False	NA	NA	False	NA	NA	NA	121025798	121025337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_121025300_121025800
24551	chr14	-	2746	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	36	334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1810.12354550732	1	121	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCTGTCTTTAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	36857173	36842446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855235_36855604_36855761_36857151
24552	chr1	+	3218	4	Antisense	novelGene_ENSMUSG00000015961.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAATAAACTCCATCTTT	NA	False	NA	NA	False	NA	NA	NA	177591719	177601217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_177591870_177595223_177595371_177597490_177598831_177599636
24554	chr7	-	2960	23	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	48.3838175597264	1	79	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697693	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684078_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
24555	chr8	+	2037	5	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_4	346.440831889083	3261	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	NA	False	NA	NA	NA	107783508	107787563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107783623_107783724_107784044_107784678_107784820_107785008_107785997_107787088
24556	chr18	-	2539	7	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	-6	-385	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	472.750110170973	2	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTCTCTCCTCGCTTA	NA	False	NA	NA	False	NA	NA	NA	38471996	38460995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38462027_38463538_38463714_38465020_38465206_38465511_38466390_38468068_38468171_38471143_38471276_38471960
24557	chr3	+	2523	12	FSM	ENSMUSG00000028032.14	ENSMUST00000029666.14	2600	12	77	0	-20	0	multi-exon	FALSE	canonical	3	27	junction_4	6.54292880561694	185	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	NA	False	NA	NA	NA	131270605	131349432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
24559	chr3	-	2854	28	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	395.990338799442	3	97	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3537	False	NA	NA	False	NA	NA	NA	89959792	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909216_89909585_89909784_89910551_89910620_89915562_89915669_89916586_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928364_89928545_89928674_89932502_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
24560	chr12	+	3261	7	NIC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	39	-49	intron_retention	FALSE	canonical	3	5890	junction_1	205.890477897568	1	169	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758278	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24761541_24761667_24761802_24762659
24561	chr16	+	4280	24	NIC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	669	-3	combination_of_known_junctions	FALSE	canonical	3	153	junction_4	55.9212584403968	102	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCCATATGTTAAATGTG	NA	False	NA	NA	False	NA	NA	NA	31483636	31692161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_31483689_31484392_31484525_31502945_31503113_31561923_31562089_31600599_31600654_31606899_31606951_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615829_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
24562	chr15	-	1121	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	132	490	5	-490	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTGTAGACTGGTGCCC	163	False	NA	NA	False	NA	NA	NA	98832314	98829795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
24564	chr15	-	1551	3	ISM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	2011	0	2011	0	3prime_fragment	FALSE	canonical	3	2174	junction_2	1417	4	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	NA	False	NA	NA	NA	98849573	98847717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98848896_98849068_98849218_98849349
24565	chr2	-	2364	13	NIC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	902	junction_4	71.8831517116494	57	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3999	False	NA	NA	False	NA	NA	NA	3513794	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
24566	chr16	-	1059	8	ISM	ENSMUSG00000052299.10	ENSMUST00000232095.2	2360	12	37	7160	37	-7160	5prime_fragment	FALSE	canonical	3	140	junction_4	18.5857087954313	2	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGCCAAGAAAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	87229414	87217235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
24567	chr6	-	902	3	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGGGGCCGCCTTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	67249208	67243980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67244391_67248178_67248330_67248867
24568	chr13	+	2787	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	-4	0	4	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	878	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCTTACTTGTCCGTG	NA	False	NA	NA	False	NA	NA	NA	54225887	54262365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
24569	chr8	-	2340	6	NNC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.611363302881	677	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	NA	False	NA	NA	NA	11685743	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_11662948_11665749_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
24570	chr4	+	4456	12	FSM	ENSMUSG00000028854.10	ENSMUST00000030669.8	4676	12	213	7	213	-7	multi-exon	FALSE	canonical	3	38	junction_3	11.7922793063796	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGAGTCCAGGGCTGCT	370	False	NA	NA	False	NA	NA	NA	133097229	133151006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_133098219_133139147_133139609_133142611_133142863_133143591_133143810_133145210_133145414_133146764_133146855_133147235_133147307_133147412_133147587_133147815_133147931_133148096_133148199_133148812_133148886_133149297
24571	chr7	-	3599	12	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-274	-8	intron_retention	FALSE	canonical	3	95	junction_6	21.2490155338318	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGATTTCTGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	140688861	140681145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709
24572	chr10	-	4961	1	Intergenic	novelGene_3422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTTGTAAAGTGATGAT	9168	False	NA	NA	False	NA	NA	NA	33800404	33795443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_33795400_33800400
24573	chr14	+	1840	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-19	1288	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2980.96196670028	3	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTGTGCTGCAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	63359943	63380600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371219_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379972
24574	chr14	-	1911	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	3	142	junction_8	1031.02108823001	65	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63746168	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63745755
24575	chr15	+	1551	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	430	1	0	-1	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	2962	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGGCATCTGGTTCAT	NA	False	NA	NA	False	NA	NA	NA	98928201	98935990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
24577	chr2	+	2838	18	NNC	ENSMUSG00000027469.17	novel	3483	18	NA	NA	3	-607	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	204.721077867384	2	90	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAGCCAGTCTATTGGA	2697	False	NA	NA	False	NA	NA	NA	152689886	152735967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724246_152726105_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
24578	chr15	-	5030	6	NNC	ENSMUSG00000041935.11	novel	5076	6	NA	NA	36	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	90.8325932691564	1	133	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGTTTCTTACTTTC	2216	False	NA	NA	False	NA	NA	NA	4025190	4011520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_4015962_4018078_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
24579	chr18	-	6041	9	Antisense	novelGene_ENSMUSG00000005871.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGAAGTTAAGCAAATTAT	NA	False	NA	NA	False	NA	NA	NA	34449918	34429083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_34429181_34431473_34431855_34433018_34433117_34434315_34434367_34437633_34437774_34438616_34438700_34439317_34439430_34443742_34443958_34445054
24580	chr8	-	1523	1	Antisense	novelGene_ENSMUSG00000000303.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTCTTCTACACACT	6336	False	NA	NA	False	NA	NA	NA	107396869	107395346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107395300_107396900
24581	chr7	-	1628	4	Antisense	novelGene_ENSMUSG00000004056.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCCCGAGTGTGCGCG	824	False	NA	NA	False	NA	NA	NA	27338876	27335856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_27335902_27336345_27336434_27336514_27336618_27337484
24582	chr11	+	1189	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	223	0	-223	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTAGCTTTTCAATT	439	False	NA	NA	False	NA	NA	NA	52122863	52137462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
24583	chrX	-	2589	16	NNC	ENSMUSG00000031139.17	novel	3671	25	NA	NA	847	-56494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.227981559714	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCTACCATCTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	59223602	59157812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59158290_59158411_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
24584	chr3	-	4240	23	NNC	ENSMUSG00000093390.2	novel	383	3	NA	NA	-26988	998	intron_retention	FALSE	non_canonical	0	0	junction_1	0	98	11	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAGTCTAGTAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	88555356	88522765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88522828_88523866_88523960_88537091_88537239_88539217_88539284_88539580_88539646_88540217_88540349_88540563_88540671_88540802_88540953_88541715_88541965_88542286_88542414_88542905_88543024_88543158_88543409_88545575_88545652_88546627_88546800_88547589_88547658_88549732_88549932_88550230_88550346_88550453_88550522_88550649_88550686_88550866_88550917_88551093_88551538_88553481_88553662_88554089
24585	chr6	+	3050	23	NNC	ENSMUSG00000030088.16	novel	653	5	NA	NA	-459	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	47.0555544714072	1	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTTGTGTCACTGCTC	NA	False	NA	NA	False	NA	NA	NA	90527311	90576149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90527405_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
24586	chr13	-	2694	9	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	-3	-62	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	94.6358151018947	6	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTAACTGGTTTAAATT	NA	False	NA	NA	False	NA	NA	NA	62908517	62847281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848488_62848571_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62871911_62872032_62886705_62886913_62894415_62894651_62908389
24587	chr8	-	2150	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	14	-506	6	503	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	2169	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACTCACTCTCTAAACC	NA	False	NA	NA	False	NA	NA	NA	108151667	108138614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
24588	chr16	-	2907	16	NNC	ENSMUSG00000052459.14	novel	4234	15	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.466703256489	25	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACTTTTCTTTCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	43959382	43905768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_43906225_43907261_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
24589	chr11	+	1936	4	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGTGCTGAACAAAAGGAA	6765	False	NA	NA	False	NA	NA	NA	69807549	69809855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69808164_69808250_69808331_69808425_69808555_69808742
24590	chr4	-	4486	3	FSM	ENSMUSG00000050890.16	ENSMUST00000105876.9	4509	3	24	-1	-4	0	multi-exon	FALSE	canonical	3	58	junction_1	10	81	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAAAGTTCTCTTGCTA	4315	False	NA	NA	False	NA	NA	NA	134014540	134002312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134006428_134011556_134011859_134014471
24591	chr14	-	1455	7	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1355.4333460394	13	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAAGGAAAGACAATTTT	8754	False	NA	NA	False	NA	NA	NA	52341456	52311906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312593_52313087_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
24592	chr19	-	3213	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	12	3	-7	-3	multi-exon	TRUE	canonical	3	64	junction_11	39.5783562189201	251	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATTGTGTGTGTTCTATT	NA	False	NA	NA	False	NA	NA	NA	44058202	44023385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
24593	chr10	-	1676	9	NNC	ENSMUSG00000036112.16	novel	1984	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	726.072611726954	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACATTTTAATGTGTATG	NA	False	NA	NA	False	NA	NA	NA	93725646	93696785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706165_93715956_93716001_93722855_93722964_93725399
24594	chr18	-	1902	5	FSM	ENSMUSG00000052102.16	ENSMUST00000237487.2	1929	5	7	20	3	3	multi-exon	FALSE	canonical	3	53	junction_1	550.877028019866	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCTTTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	38472026	38460607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38462027_38466206_38466390_38468068_38468171_38471143_38471276_38471960
24595	chr10	+	1874	8	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	0	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1291.91446295482	6192	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTACATTTTCACTCCTG	903	False	NA	NA	False	NA	NA	NA	127894879	127913119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906055_127907936_127908027_127910090_127910154_127911206_127911232_127911935
24597	chr4	-	1706	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-57	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	368.163573247907	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGCTGGTGGGTTT	2556	False	NA	NA	False	NA	NA	NA	129229099	129203308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129203839_129203951_129211440_129211552_129211654_129211713_129212236_129212308_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228361_129228978
24598	chr19	+	2243	10	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	126.361132483328	47	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	60800033	60824673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263_60823788_60823874
24600	chr5	-	2677	8	NIC	ENSMUSG00000029145.13	novel	2025	13	NA	NA	27	0	intron_retention	FALSE	canonical	3	570	junction_7	57.7771934385243	204	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	31350456	31344910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31345145_31345257_31345439_31346912_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
24601	chr11	-	3705	19	NNC	ENSMUSG00000002814.16	novel	3741	19	NA	NA	-19	-12	intron_retention	FALSE	canonical	2	3	junction_14	39.8550227638396	158	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCATCCATATTTTCTG	NA	False	NA	NA	False	NA	NA	NA	60668210	60630896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650164_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
24603	chr5	-	2309	6	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	71	-355	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	102.061941976429	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCGGACACATACTGGA	NA	False	NA	NA	False	NA	NA	NA	105007588	104961389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_104963302_104964564_104964626_104964862_104964990_104965173_104965219_104992863_104992972_105007532
24604	chr11	-	2083	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	9	17	9	-17	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	1	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTTTCACAGCTATGC	NA	False	NA	NA	False	NA	NA	NA	35725324	35699224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
24605	chr2	-	1369	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-944	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	4386.11704522064	31	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAAACTTGATTCCTGG	3736	False	NA	NA	False	NA	NA	NA	154734751	154714281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726286_154729659_154729728_154730102_154730281_154734609
24606	chr12	-	2222	13	Intergenic	novelGene_4477	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	38	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGACAAACTGAAGC	NA	False	NA	NA	False	NA	NA	NA	110538116	110452223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_110452385_110488922_110489106_110510539_110510618_110512026_110512120_110512202_110512334_110517493_110517554_110519216_110519325_110521273_110521331_110527731_110527896_110534154_110534290_110535387_110535490_110537129_110537783_110537819
24607	chr16	-	3993	25	NNC	ENSMUSG00000039637.16	novel	4296	28	NA	NA	9	491	intron_retention	FALSE	non_canonical	0	0	junction_8	24.6672297233034	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTTGTGCTGCTCC	NA	False	NA	NA	False	NA	NA	NA	4497597	4444749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449678_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
24608	chr1	+	3289	10	NNC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	-3	-1	intron_retention	FALSE	canonical	1	1	junction_1	39.0555160423382	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTGTGTACTTACAGT	73	False	NA	NA	False	NA	NA	NA	75168832	75176030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75169267_75170821_75170929_75171484_75171588_75171706_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
24609	chr10	+	2516	13	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	3	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	198.672608971533	10	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTTAGACTTCTGATGT	1011	False	NA	NA	False	NA	NA	NA	127851067	127865892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854401_127855334_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
24610	chr1	-	2182	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	108	12	108	-10	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	136	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCTTTGAAGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	65218232	65197786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
24611	chr13	+	1716	5	Fusion	ENSMUSG00000113626.2_ENSMUSG00000113836.2	novel	2239	3	NA	NA	49	122	multi-exon	TRUE	non_canonical	0	0	junction_4	29.7772983999556	4	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAGAAGGCATACTAGAG	NA	False	NA	NA	False	NA	NA	NA	61952128	62198922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62008746_62198713
24613	chr15	-	1458	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	-46	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	767.984713932076	6	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGCTTGAATTTCC	2617	False	NA	NA	False	NA	NA	NA	43146161	43113450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113600_43114938_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
24614	chr4	-	1429	10	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	63	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	73.7735942588982	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	NA	False	NA	NA	NA	147952877	147945247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
24615	chr14	+	2004	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	123	1273	0	-104	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACAAAAAATGTGACCTGA	9014	False	NA	NA	False	NA	NA	NA	55777845	55786201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
24616	chr14	+	3435	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	78	-1394	-2	-1254	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	332	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTTGCTACTTACCGGA	NA	False	NA	NA	False	NA	NA	NA	29700371	29716570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
24617	chr16	-	2075	14	FSM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	39	1066	10	-189	multi-exon	FALSE	canonical	2	298	junction_4	64.525303508774	3	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGGAGAGCACAGTCGCA	NA	False	NA	NA	False	NA	NA	NA	30406371	30380377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
24618	chr6	-	2080	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	15	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2311.11545939762	2	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACCTGGGTGTCAGG	9284	False	NA	NA	False	NA	NA	NA	128415625	128407072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407778_128409384_128409576_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
24619	chr1	+	2707	4	Antisense	novelGene_ENSMUSG00000038633.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGGCGGCAGCTCGAGGC	NA	False	NA	NA	False	NA	NA	NA	182103532	182110309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182103882_182103925_182104459_182105581_182107284_182110186
24620	chr16	+	3165	27	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	62	627	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	375.146434919934	3	133	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGATGTATAATGTGCC	NA	False	NA	NA	False	NA	NA	NA	48251661	48451890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257699_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335015_48378822_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407289_48407502_48412876_48412979_48432651_48432706_48436054_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447475_48451067_48451569_48451759
24621	chr11	-	2431	6	ISM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	23	-5	-21	5	intron_retention	FALSE	canonical	3	993	junction_4	14.324803663576	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGAGCTCCAGTCAACCT	NA	False	NA	NA	False	NA	NA	NA	120534551	120530236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717
24622	chr19	+	2383	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	125.201270060217	1	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTAGTATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	38043480	38062872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048654_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
24623	chr19	-	2069	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	24	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1225.28863403134	5	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3787	False	NA	NA	False	NA	NA	NA	7017311	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002802_7003659_7003753_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
24625	chr3	-	2184	9	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	298.294632033498	42	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAGACAATTATTGCATTT	NA	False	NA	NA	False	NA	NA	NA	10416370	10405021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10415562_10416153_10416301
24626	chr7	-	1910	8	NNC	ENSMUSG00000070436.13	novel	2128	6	NA	NA	0	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	778.044198943867	21	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGGTGTGTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	99002321	98994639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98994801_98995055_98995630_98996131_98996365_98996472_98996572_98998009_98998672_98999416_98999492_99001030_99001075_99002259
24627	chr3	-	2065	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	-18	0	-18	0	multi-exon	FALSE	canonical	3	875	junction_11	59.2580851965116	2478	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	NA	False	NA	NA	False	NA	NA	NA	153650287	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
24628	chr3	+	2126	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	-12	13	-5	-5	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	1	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTATAGGAAATGTTATT	4844	False	NA	NA	False	NA	NA	NA	34074241	34123481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
24629	chr18	-	4674	11	Fusion	ENSMUSG00000038425.19_ENSMUSG00000044906.7	novel	4393	4	NA	NA	-11	4147	intron_retention	FALSE	non_canonical	0	0	junction_1	134.62897162201	2	55	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACTATTAAATTTCAGT	NA	False	NA	NA	False	NA	NA	NA	70663350	70593898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_-_70595816_70601249_70602849_70604743_70604794_70650037_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70663258
24630	chr9	-	1150	8	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGATGACCTAAAATTGG	NA	False	NA	NA	False	NA	NA	NA	64085801	64082485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082581_64082863_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
24631	chr3	+	3146	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	28	50	-3	-45	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	318	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTTTCATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	66893032	67265678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
24632	chr5	+	2553	17	NNC	ENSMUSG00000005514.15	novel	918	7	NA	NA	-12571	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	86.9029406507628	551	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	563	False	NA	NA	False	NA	NA	NA	135686315	135764180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135686349_135691057_135691159_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
24633	chr8	+	3557	10	NIC	ENSMUSG00000034807.10	novel	3207	12	NA	NA	918	1	intron_retention	FALSE	canonical	3	838	junction_6	54.4040666599088	429	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGTCTTTGGGTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	72064732	72077551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72075475_72075733_72075941_72076136
24634	chr7	-	1931	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	-10	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	621.456675883364	29	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002456	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98994801_98995055_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
24635	chr5	+	1697	9	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	-20	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1371.01417183594	4	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	307	False	NA	NA	False	NA	NA	NA	77099174	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112364_77114628
24638	chrX	+	4108	17	FSM	ENSMUSG00000000838.18	ENSMUST00000114653.2	4058	17	-52	2	-37	-2	multi-exon	FALSE	canonical	3	204	junction_14	173.862182759075	400	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTAGTCTGACAGATGT	NA	False	NA	NA	False	NA	NA	NA	67722370	67761567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
24639	chr9	+	2168	9	NIC	ENSMUSG00000010048.11	novel	2054	11	NA	NA	44	-1	intron_retention	FALSE	canonical	3	631	junction_8	30.1402969461152	31	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGCCTTTATCCTGAGT	NA	False	NA	NA	False	NA	NA	NA	107464999	107470236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107465146_107467101_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
24641	chr7	-	3197	19	NNC	ENSMUSG00000038644.15	novel	3302	26	NA	NA	-5019	-617	intron_retention	FALSE	canonical	2	3	junction_3	298.882202527441	1	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATCCAACCCCCTTATC	NA	False	NA	NA	False	NA	NA	NA	44192861	44183936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44184141_44184440_44185261_44185354_44185451_44187103_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664
24642	chr11	+	1529	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-35	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTGGACAGTCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654713_120654774
24643	chr8	+	2540	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	14	160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	219.057275536326	2	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTTTTAGTTTCAAGTA	NA	False	NA	NA	False	NA	NA	NA	69246639	69280313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69276819_69276967_69279928
24645	chr11	-	1986	4	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	446.748997387422	40	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6404	False	NA	NA	False	NA	NA	NA	102076074	102053322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054994_102056185_102056264_102073746_102073818_102075908
24646	chr10	-	2806	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	69	-2	-17	2	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	491	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAAGTATTCCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	22607277	22579775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
24647	chr8	+	3928	1	ISM	ENSMUSG00000047388.11	ENSMUST00000109099.4	4877	4	13119	6	13119	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	206	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACCTTTCTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	117683250	117687178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_117683200_117687200
24648	chr1	-	1761	6	NIC	ENSMUSG00000026701.16	novel	959	6	NA	NA	-1	-2	combination_of_known_splicesites	FALSE	canonical	3	5	junction_5	850.357007379842	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAAACCGTTGTCATGT	NA	False	NA	NA	False	NA	NA	NA	161078692	161068586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928_161077040_161078326
24650	chr3	+	2182	9	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	27	junction_5	1462.40529073681	1	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTTGACTTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	89986971	90008209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89996354_89996431_89997103_89997167_89997316_89997387_90006834
24651	chr19	+	2234	10	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-8	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	126.361132483328	43	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	60800014	60824673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263_60823788_60823902
24654	chr2	-	2179	10	NNC	ENSMUSG00000017707.10	novel	3683	10	NA	NA	18	-1403	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	163.872880574103	1	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATATTTAGTTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	163487027	163466594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163472974_163474060_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
24655	chr5	+	3346	11	NIC	ENSMUSG00000041264.17	novel	3827	10	NA	NA	26	-1	combination_of_known_junctions	FALSE	canonical	3	26	junction_4	155.582004100731	1	97	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTTTTTGTTGGTTTCA	NA	False	NA	NA	False	NA	NA	NA	149121395	149152237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_149121617_149122294_149122472_149124517_149124687_149125154_149125284_149130704_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
24656	chr17	-	2957	22	NIC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-20	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_15	46.8986943138577	189	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAGTAGATAGACCCCC	8782	False	NA	NA	False	NA	NA	NA	29456706	29376896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478_29421543_29421828_29421880_29423662_29423723_29428397_29428475_29428663_29428704_29430621_29430726_29444164_29444212_29445166_29445208_29456586
24657	chrX	-	2355	8	NIC	ENSMUSG00000031167.17	novel	1338	7	NA	NA	0	-589	combination_of_known_junctions	FALSE	canonical	2	63	junction_1	380.838816406144	37	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGGCATCGTGTATCC	6535	False	NA	NA	False	NA	NA	NA	8011962	8005805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8007448_8009065_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
24659	chr4	-	2505	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	2602	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.276718698865	1	105	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147891643	147838439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840456_147840532_147840693_147842158_147842286_147845677_147845783_147891546
24660	chr4	+	4886	24	NNC	ENSMUSG00000028552.14	novel	2802	25	NA	NA	30	-169	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	53.6465362410438	2	156	15	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAAATGTGTACTATATC	NA	False	NA	NA	False	NA	NA	NA	109137529	109244845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178523_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226182_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109242515
24661	chr5	-	2314	12	NIC	ENSMUSG00000029201.15	novel	2550	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_11	127.934900801053	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	NA	False	NA	NA	NA	65585746	65570563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65585656
24662	chr2	+	1760	12	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	31	-708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1221.50133878811	15	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGTCGTTTTTTTCCCC	NA	False	NA	NA	False	NA	NA	NA	121244394	121268460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260019_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
24663	chr5	-	3283	11	NIC	ENSMUSG00000025534.18	novel	2687	12	NA	NA	-2	3	intron_retention	FALSE	canonical	3	83	junction_6	17.3979883894662	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAACTGTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	130031708	130017860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
24665	chr5	+	1847	10	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1064.7410860143	2	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	709	False	NA	NA	False	NA	NA	NA	77099576	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114811_77115022
24666	chr6	-	1860	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-4	-268	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	376.251724248541	14	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTTTGGGAGAGCTGTA	NA	False	NA	NA	False	NA	NA	NA	120893801	120870082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120871254_120872579_120872793_120874228_120874321_120877116_120877328_120878683_120878750_120893694
24667	chr9	+	3201	13	Antisense	novelGene_ENSMUSG00000032407.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCAGCAGCGCGGGTGA	NA	False	NA	NA	False	NA	NA	NA	95368893	95393938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_95370845_95371754_95371964_95372141_95372309_95373143_95373231_95373323_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375870_95377886_95377987_95382740_95382873_95384592_95384638_95393869
24668	chr4	+	2243	19	NNC	ENSMUSG00000028330.9	novel	3010	23	NA	NA	141	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	91.0446912371564	20	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	0	True	NA	NA	False	NA	NA	NA	46138753	46172403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147442_46155765_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
24669	chr16	-	2136	17	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	0	-61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	297.939984518695	3	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAACTGCTTGAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	3895691	3857895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872789_3874257_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
24672	chr5	+	2463	8	NIC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	-7	0	intron_retention	FALSE	canonical	3	4657	junction_7	269.173261855555	51	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	628	False	NA	NA	False	NA	NA	NA	135807508	135819245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135816473_135818054_135818155_135818479_135818632_135818930
24674	chr3	-	1853	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	10	44	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	818.873860860145	1	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTGGGTCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	108352504	108333883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344892_108352312
24675	chr14	+	5567	10	FSM	ENSMUSG00000021962.10	ENSMUST00000022535.9	5576	10	-16	25	-16	-18	multi-exon	FALSE	canonical	3	125	junction_5	16.6332999331662	1	169	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGTTTTAGCACCTACT	NA	False	NA	NA	False	NA	NA	NA	30201552	30248995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30234940_30235055_30240875_30241635_30243546_30243613_30244684_30244904_30245182
24677	chr6	+	2562	20	Intergenic	novelGene_4161	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	178	5	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGGTCGGGATGGCGGG	NA	False	NA	NA	False	NA	NA	NA	47507212	47572292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517788_47518776_47518905_47519299_47519343_47520880_47520973_47521371_47521548_47522612_47522853_47524281_47524373_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533083_47535109_47535229_47553496_47553599_47554477_47554602_47572216
24678	chr16	+	2737	9	NIC	ENSMUSG00000022724.16	novel	2159	10	NA	NA	8	722	combination_of_known_splicesites	FALSE	canonical	2	8	junction_7	90.0583144412552	1	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCAGGTGGTGCTAAAAA	NA	False	NA	NA	False	NA	NA	NA	59292192	59313546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59311567_59311658_59312103
24679	chr11	-	2345	13	FSM	ENSMUSG00000000384.16	ENSMUST00000189268.7	2347	13	0	2	0	-2	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	83	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGGGCCACTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	6576067	6565600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
24680	chr14	-	1909	1	NIC	ENSMUSG00000021965.4	novel	2260	9	NA	NA	13	-2100	mono-exon	FALSE	NA	NA	NA	NA	NA	6	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCACCCTTTTATGGCCT	NA	False	NA	NA	False	NA	NA	NA	58063601	58061692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_58061700_58063600
24682	chr9	+	2663	14	ISM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	98	22089	6	6973	5prime_fragment	FALSE	non_canonical	0	0	junction_1	766.830995166424	260	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTGTGACTCTTACAGG	NA	False	NA	NA	False	NA	NA	NA	72569725	72635045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692
24683	chr2	-	4941	2	NIC	ENSMUSG00000026788.14	novel	4998	3	NA	NA	-10	-6	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	0	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAAGTTGTGTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	33358554	33340304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_33345136_33358444
24684	chr4	-	2355	11	NNC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	172.233823623584	3	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAATGGGCTTTGTTTTT	5482	False	NA	NA	False	NA	NA	NA	132073015	132059239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132060314_132060928_132061052_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
24685	chr2	-	2953	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	91	-324	91	324	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	824	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTTCTGCCCACCTTGC	NA	False	NA	NA	False	NA	NA	NA	105229573	105216311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
24686	chr8	+	1351	2	ISM	ENSMUSG00000005481.19	ENSMUST00000127505.8	1927	11	-40	2647	-40	-663	intron_retention	FALSE	canonical	3	2336	junction_1	0	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCAGTGTTAAGGTAAGC	NA	False	NA	NA	False	NA	NA	NA	84441856	84447256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84441967_84446015
24687	chr15	+	3271	14	NIC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	22	773	combination_of_known_junctions	FALSE	canonical	1	10	junction_1	184.855708962679	1	50	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGCCAGCACTGTTGCT	97	False	NA	NA	False	NA	NA	NA	12117973	12167079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_12118034_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230
24688	chr1	+	2518	3	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	8053	-1919	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	101	2	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGCATTTTTACTGTAT	NA	False	NA	NA	False	NA	NA	NA	190803280	190816752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_190803346_190812685_190812754_190814367
24689	chr19	+	1581	2	Intergenic	novelGene_1266	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	41513739	41515398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41514495_41514572
24690	chr19	-	3431	25	FSM	ENSMUSG00000024827.11	ENSMUST00000025778.9	3767	25	329	7	329	-7	multi-exon	FALSE	canonical	1	455	junction_4	183.478351735445	331	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTAATGCGAATTTCCCA	NA	False	NA	NA	False	NA	NA	NA	30152500	30075853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_30076511_30077236_30077318_30078142_30078316_30080378_30080475_30088072_30088185_30091121_30091264_30092587_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30124568_30124647_30128821_30128987_30135913_30136050_30151823_30151903_30152390
24691	chr11	-	2819	17	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	-3	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	438.7741045729	1	115	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAAGCTTTGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	75239139	75191232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209347_75219493_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
24692	chr4	+	1664	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	13	182333	multi-exon	FALSE	non_canonical	0	0	junction_1	167.376073558917	17	61	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216507	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147390101_147390156_147413451_147413566_147415724_147415863_147416780_147417051_147417686_147418091_147600209
24693	chr1	-	2149	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	746	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2135.97607794553	1	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGGGGTTTTTACTCT	NA	False	NA	-106	True	NA	NA	NA	86285945	86278300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285177_86285828
24694	chr11	+	3298	18	NNC	ENSMUSG00000020741.18	novel	5379	26	NA	NA	-2637	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	120.125165403931	1	61	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCTGCTGCCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	74552670	74561663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558273_74558492_74558587_74558672_74558808_74558892_74558967_74560240_74560449_74560733
24696	chr12	+	3979	4	NIC	ENSMUSG00000034157.13	novel	1499	3	NA	NA	552	-24	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	45.8427263102398	4	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGTCACTTACTTGA	NA	False	NA	NA	False	NA	NA	NA	86994815	87012112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_86994878_86999517_86999706_87007045_87007216_87008553
24697	chr10	+	1814	1	ISM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	125314	1157	125314	-1157	mono-exon	FALSE	NA	NA	NA	NA	NA	4	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAACAAGAGGGCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	83321398	83323212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_83321400_83323200
24698	chr5	+	2876	15	NNC	ENSMUSG00000036817.15	novel	3714	20	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	380.552873850558	5	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTGCGATTTCAAGTG	NA	False	NA	NA	False	NA	NA	NA	139186421	139235548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219655_139219733_139224649_139224695_139226987_139227023_139227075_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
24699	chr15	+	1485	3	Antisense	novelGene_ENSMUSG00000116358.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGTAGGGAAGGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	98829329	98831077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98830446_98830575_98830716_98830848
24700	chr13	-	1720	8	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-31	414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1296.11771952132	4	22	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTGCCCCCAAGTCTCA	NA	False	NA	NA	False	NA	NA	NA	100923025	100915702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916294_100916529_100916609_100917663_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
24701	chr19	+	4171	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	-31	-735	-7	-13	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	319	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAAGGGCTAATGATTTG	NA	False	NA	NA	False	NA	NA	NA	55304751	55615728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
24702	chr7	-	2041	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	125	49	0	-43	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	121	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTTATAGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	99002321	98994644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
24703	chr12	-	3066	7	NNC	ENSMUSG00000079036.11	novel	3857	6	NA	NA	-12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.325768966679	228	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGTGTTTTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	87490621	87472940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87473543_87474343_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
24704	chr18	+	1248	5	ISM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	40	3463	2	-31	intron_retention	FALSE	canonical	3	112	junction_4	20.1664944896231	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATCTGCTCCTCAATGGA	NA	False	NA	NA	False	NA	NA	NA	36916323	36921284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554
24705	chr18	+	2454	4	NIC	ENSMUSG00000019143.16	novel	3336	13	NA	NA	774	177	intron_retention	FALSE	canonical	3	88	junction_2	12.657891697365	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGACCTGAGTTCATTT	1334	False	NA	NA	False	NA	NA	NA	36921646	36924924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36922338_36922419_36922663_36923186_36923304_36923521
24706	chr10	+	3104	14	NIC	ENSMUSG00000032763.12	novel	2233	15	NA	NA	6	4	intron_retention	FALSE	canonical	3	132	junction_7	19.604370965342	59	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAATCTGTGTATACTGG	5381	False	NA	NA	False	NA	NA	NA	78410315	78420330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
24707	chr1	+	1854	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	666.698752561205	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743313_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749722_59749769_59749812_59750429
24708	chr14	-	3170	3	Antisense	novelGene_ENSMUSG00000040618.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGAGGTTGGGCGGGAGG	4975	False	NA	NA	False	NA	NA	NA	55783844	55777845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55777970_55779861_55780106_55781042
24709	chr12	-	3296	15	NIC	ENSMUSG00000041846.16	novel	4083	15	NA	NA	14250	51	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	212.13386224317	8	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCACAGTTCTTAATTTGT	5205	False	NA	NA	False	NA	NA	NA	101034926	101006122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101011784_101011941_101015918_101016078_101017592_101017696_101017789_101017922_101019687_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895
24710	chr15	+	4513	7	NIC	ENSMUSG00000046897.18	novel	3882	7	NA	NA	-406	-1	intron_retention	FALSE	canonical	0	0	junction_4	56.6235129802295	168	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTCCATGTCCTCTTTG	1430	False	NA	NA	False	NA	NA	NA	102112606	102124032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102113522_102113663_102113741_102116205_102116356_102116670_102116797_102117187_102117312_102117589_102117709_102121030
24711	chr4	+	2069	17	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-6	136	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_8	234.161803033714	13	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	9975	False	NA	NA	False	NA	NA	NA	155954017	155973326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971304_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
24713	chr19	-	1937	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-56	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.93458700951	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCCATTCATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	15902350	15882498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883000_15883149_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
24714	chr10	+	2703	11	NNC	ENSMUSG00000019794.14	novel	1774	11	NA	NA	28	-1	intron_retention	FALSE	canonical	1	2	junction_5	163.780462815319	2	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAGTGCTATATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	7601799	7638827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7619790_7619931_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7636634_7637006_7637134_7638553
24716	chr2	-	3676	23	Antisense	novelGene_ENSMUSG00000026812.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	31	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCAGCACCTCCCCCTGGC	6135	False	NA	NA	False	NA	NA	NA	28577121	28531261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_28531331_28542179_28542241_28548613_28548802_28551592_28551696_28552470_28552624_28553509_28553655_28555017_28555173_28555565_28555640_28560878_28561056_28561776_28561935_28562403_28562514_28562793_28562917_28565198_28565259_28565672_28565778_28566009_28566569_28568171_28568214_28568959_28569130_28570033_28570216_28571200_28571312_28571921_28572045_28575732_28575921_28575994_28576157_28576663
24717	chr13	+	4042	9	ISM	ENSMUSG00000041817.15	ENSMUST00000042517.8	4547	13	26014	-2	26014	2	3prime_fragment	FALSE	canonical	3	256	junction_5	15.9765453086705	138	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTCTTCTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	97234164	97266025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199_97259401_97263003
24718	chr1	+	3365	13	NNC	ENSMUSG00000026439.15	novel	716	5	NA	NA	87	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.891408578629	2	118	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCACAAGTATACATGCTT	NA	False	NA	NA	False	NA	NA	NA	132405466	132433395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405622_132412483_132412657_132417325_132417467_132418216_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424593_132424767_132425667_132425746_132431501
24719	chr13	-	1692	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	490	0	-490	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	83	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGTGTCCTAACGG	NA	False	NA	NA	False	NA	NA	NA	34314337	34311220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
24720	chr15	-	4475	9	FSM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	80	6	80	-6	multi-exon	FALSE	canonical	3	32	junction_4	8.71779788708135	95	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATTGTGTAGTTATAT	7188	False	NA	NA	False	NA	NA	NA	37961267	37924201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37927642_37929281_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
24721	chr4	+	1346	6	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36422	768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.4	4	41	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145136887	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136950_145162615_145162684_145173283_145173342_145174456_145174578_145176036_145176445_145177597
24722	chr18	-	6131	9	Genic_Genomic	ENSMUSG00000117992.2_ENSMUSG00000118234.2	novel	5267	1	NA	NA	-64492	-1922	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	92	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGCCACAAAAGAATGGAA	NA	False	NA	NA	False	NA	NA	NA	65822489	65713344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_65713581_65756052_65758406_65771820_65772001_65777261_65777441_65784630_65784792_65789419_65789702_65815963_65816079_65818593_65818758_65820028
24724	chr1	-	1971	15	FSM	ENSMUSG00000026209.16	ENSMUST00000113605.10	1571	15	-408	8	19	-8	multi-exon	FALSE	canonical	3	252	junction_14	185.094639334056	47	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTCCAGCTCTCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	75293997	75285216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
24725	chr13	-	3975	5	NIC	ENSMUSG00000022228.15	novel	4366	6	NA	NA	11	-62	intron_retention	FALSE	canonical	3	7	junction_2	5.5	26	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGTAAAGATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	21637889	21626411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_21630000_21631955_21632065_21633443_21633504_21633610_21633687_21637747
24727	chr3	+	2140	15	Antisense	novelGene_ENSMUSG00000104795.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	5	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCACGGGCCGCTCTAGC	229	False	NA	NA	False	NA	NA	NA	96618841	96634789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_96619375_96620794_96620946_96621409_96621461_96621574_96621679_96622437_96622587_96622949_96623011_96623744_96623797_96623982_96624066_96626551_96626643_96626776_96626882_96629855_96629941_96630828_96631018_96631113_96631312_96633151_96633320_96634669
24728	chr3	-	2932	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	4	-698	-2	0	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	474	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAATGAGGGCATGTGTG	3742	False	NA	NA	False	NA	NA	NA	89319172	89309275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
24729	chr15	+	1958	12	NIC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	5	1	combination_of_known_junctions	FALSE	canonical	3	48	junction_4	420.781759652434	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGCTAGTCATTTATT	200	False	NA	NA	False	NA	NA	NA	38662192	38692688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
24732	chr11	-	1993	13	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	3	-62	intron_retention	FALSE	canonical	3	937	junction_7	76.8904343133064	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACCCTCTGGAATGT	4518	False	NA	NA	False	NA	NA	NA	6217743	6208980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216972_6217417_6217580_6217659
24733	chr11	-	3515	7	NNC	ENSMUSG00000018442.14	novel	3666	7	NA	NA	12	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204.952840103929	2	70	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTGATCAGCAAACTAT	NA	False	NA	NA	False	NA	NA	NA	70910083	70898283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70901253_70903935_70903979_70904309_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
24734	chr3	+	3096	7	FSM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	-4	9	-4	-9	multi-exon	FALSE	canonical	3	154	junction_1	13.0213499897497	743	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAAAATGTGCCTGTAG	NA	False	NA	NA	False	NA	NA	NA	132797596	132816740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_132797738_132802508_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
24735	chr8	+	2583	3	FSM	ENSMUSG00000052446.18	ENSMUST00000139781.8	416	3	-6	-2161	0	-3	multi-exon	FALSE	canonical	3	50	junction_1	148.5	3	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCCAGTTTGTAGAGACT	NA	False	NA	NA	False	NA	NA	NA	72704914	72724174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72705005_72719943_72720005_72721742
24736	chrX	-	2973	12	Intergenic	novelGene_3892	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.44975744745641	5	31	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGCGGTGAGGCGGGAGG	NA	False	NA	NA	False	NA	NA	NA	20725116	20664049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_20664119_20716163_20716320_20716481_20716587_20717703_20717814_20717900_20718052_20718168_20719699_20719881_20720054_20720149_20720353_20723848_20724026_20724114_20724172_20724644_20724751_20724979
24737	chr15	-	1282	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	129	332	2	-332	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATCTGATGTATGCCA	160	False	NA	NA	False	NA	NA	NA	98832317	98829637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
24738	chr1	+	3291	8	NIC	ENSMUSG00000026254.18	novel	1119	7	NA	NA	41	-245	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	1014.93826091511	10	124	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCAAGAGAGCAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	87142048	87167965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87160124_87160204_87165567
24739	chr13	-	2715	7	NIC	ENSMUSG00000021418.16	novel	4380	8	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	512	junction_4	31.4624997240984	24	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCTTGCTTGTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	36090331	36080687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36087740_36088401_36088547_36090186
24740	chr3	+	2920	17	NNC	ENSMUSG00000027775.10	novel	3011	16	NA	NA	47	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	213.853036204189	870	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATTTGGAGGATAAATGA	NA	False	NA	NA	False	NA	NA	NA	67490120	67511566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027_67510531_67510570
24741	chr4	+	2998	12	NNC	ENSMUSG00000029064.16	novel	2832	10	NA	NA	-8920	-3	at_least_one_novel_splicesite	FALSE	canonical	2	76	junction_1	1156.42594886426	958	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGACTCTGGTGTGATGGT	3066	False	NA	NA	False	NA	NA	NA	155566897	155643721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155566981_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
24743	chr15	-	1604	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	137	2	10	-2	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	168	False	NA	NA	False	NA	NA	NA	98832309	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
24744	chr16	-	2238	16	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	1573	7	NA	NA	10	21	multi-exon	FALSE	non_canonical	0	0	junction_1	394.626540752984	3	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCCTCAGTCTTTGAA	6240	False	NA	NA	False	NA	NA	NA	38370610	38318687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38319349_38322962_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
24745	chr2	-	2072	7	NIC	ENSMUSG00000050043.17	novel	2282	9	NA	NA	-1	0	intron_retention	FALSE	canonical	3	1517	junction_5	83.2294352311061	1281	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5297	False	NA	NA	False	NA	NA	NA	84508394	84501659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84502877_84503367_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
24746	chr13	+	2312	17	NNC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	-6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	74.9766369861306	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGTAGTTTGCATTCTT	4732	False	NA	NA	False	NA	NA	NA	38221214	38245405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38221508_38224048_38224251_38227057_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244019_38244827
24747	chr10	-	3299	13	NIC	ENSMUSG00000006342.16	novel	3151	15	NA	NA	-5	-28	intron_retention	FALSE	canonical	3	52	junction_4	9.13289232511926	1	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAGAACACAAGCTCATG	NA	False	NA	NA	False	NA	NA	NA	75479819	75472569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75473205_75473334_75473693_75473798_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
24748	chr16	+	2298	6	NNC	ENSMUSG00000058550.16	novel	1271	6	NA	NA	-19	-4	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_3	199.274082609857	68	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	48104130	48114596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48110476_48111376_48111678_48113273_48113470_48114061
24749	chr14	-	2424	8	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-19	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2474.74141300147	1	104	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCTAATTTCTGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	36857248	36842810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852729_36853490_36853607_36855528_36855761_36857151
24751	chr8	-	4260	18	NIC	ENSMUSG00000061313.11	novel	4246	18	NA	NA	32	-6	combination_of_known_junctions	FALSE	canonical	1	18	junction_17	11.4631952042464	102	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACATTCATGTGGCCTTA	NA	False	NA	NA	False	NA	NA	NA	26244409	26215378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
24752	chr7	-	2960	12	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	-2	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.568575455158	2	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGGTTTGAACAAATATGA	2663	False	NA	NA	False	NA	NA	NA	3214333	3204512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205636_3205691_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209264_3209382_3211070_3211249_3212041_3212201_3214161
24753	chr9	+	2053	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	-29	0	23	0	multi-exon	FALSE	canonical	3	310	junction_5	36.1815151813233	1019	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	508	False	NA	NA	False	NA	NA	NA	58489545	58560161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
24754	chrX	-	2384	4	NIC	ENSMUSG00000031167.17	novel	1319	8	NA	NA	-7	-1	intron_retention	FALSE	canonical	3	391	junction_1	406.090575556187	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAATCAATACTGATAAT	6554	False	NA	NA	False	NA	NA	NA	8011943	8008607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009195_8009485_8009991_8010086_8011312_8011876
24755	chr11	-	2213	12	Antisense	novelGene_ENSMUSG00000098296.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCAGGTTGGAGGAAAGC	5357	False	NA	NA	False	NA	NA	NA	4844052	4823997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_4824103_4832899_4833172_4833367_4833496_4833725_4833770_4834019_4834114_4838417_4838630_4838877_4838949_4839094_4839236_4839530_4839562_4839888_4839985_4841400_4841485_4843117
24757	chr5	+	4066	12	FSM	ENSMUSG00000029578.16	ENSMUST00000036872.16	5171	12	189	916	138	-916	multi-exon	FALSE	canonical	3	377	junction_9	31.2155926283724	185	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCCAGAGTCAAGTGCAT	NA	False	NA	NA	False	NA	NA	NA	142615485	142655427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_142615588_142623956_142624040_142641602_142641773_142643946_142644044_142644819_142644918_142645287_142645381_142646779_142646851_142648789_142648898_142650079_142650245_142651177_142651286_142651848_142652007_142652614
24760	chr16	+	1610	13	Antisense	novelGene_ENSMUSG00000025613.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTTAAAAGTAGTTGCAAA	NA	False	NA	NA	False	NA	NA	NA	87280762	87290672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_87280954_87281690_87281814_87282469_87282633_87282721_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592
24761	chr11	+	3649	24	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	47	-6	intron_retention	FALSE	canonical	1	2	junction_14	36.7150680141228	1	56	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGCCTGTGACCACTC	NA	False	NA	NA	False	NA	NA	NA	96941692	96959724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950661_96950785_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
24762	chr4	-	2649	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	-12	3	-12	-3	multi-exon	FALSE	canonical	3	305	junction_7	132.795314509043	1931	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCCTTGGCTTTTACTG	NA	False	NA	NA	False	NA	NA	NA	107975741	107901038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
24764	chr1	+	4206	10	FSM	ENSMUSG00000034343.15	ENSMUST00000178627.8	1363	10	-1	-2842	-1	-1470	multi-exon	FALSE	canonical	3	274	junction_9	29.8142396999972	1206	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATCTCAGCTTTGGAC	318	False	NA	NA	False	NA	NA	NA	91178039	91216589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_91178160_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
24765	chr7	-	1350	2	Genic_Genomic	ENSMUSG00000107383.2	novel	1342	1	NA	NA	-2	68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGAACATTGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116425088	116423676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_116424826_116424887
24766	chr2	-	2770	15	FSM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	207	2639	207	1234	multi-exon	FALSE	canonical	3	8	junction_4	6.77630927178938	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCACCTCTAAAATGAGTG	8486	False	NA	NA	False	NA	NA	NA	126774948	126734949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
24770	chr16	-	2036	20	NNC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	-295	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	120.274616521947	2013	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCCCTCTGGGTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	18631032	18599203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264_18630460_18630963
24771	chr11	-	987	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	53	11	6	-11	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAAATGAGCTGTTCTC	NA	False	NA	NA	False	NA	NA	NA	115427049	115413938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
24772	chr2	+	1412	12	ISM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	49	1165	2	389	5prime_fragment	FALSE	canonical	3	511	junction_7	49.3913366111042	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCACCCCCAGGTTCTGCA	NA	False	NA	NA	False	NA	NA	NA	174257645	174268130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109
24774	chr15	+	2308	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	20	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	591	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	NA	False	NA	NA	NA	100125719	100159129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158219
24775	chr8	+	3666	16	FSM	ENSMUSG00000025809.16	ENSMUST00000090006.12	3815	16	146	3	43	-3	multi-exon	FALSE	canonical	3	487	junction_6	37.7685348169905	320	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATTTGTTTTGGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	129412280	129459678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_129412441_129431893_129431961_129433554_129433641_129436733_129436957_129439688_129439860_129440407_129440647_129442602_129442759_129443687_129443784_129444065_129444156_129446472_129446614_129446755_129446956_129448864_129449104_129449290_129449514_129450676_129450910_129452500_129452668_129458503
24776	chr10	-	2418	15	NIC	ENSMUSG00000020124.11	novel	4666	21	NA	NA	0	-17	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	146.550698199828	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTGTTTTGATGAATTA	NA	False	NA	NA	False	NA	NA	NA	123032858	122949149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_123032731
24777	chr7	+	2635	10	NNC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	14	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	521.77569562333	36	12	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGACCATGGCCCTAG	NA	False	NA	NA	False	NA	NA	NA	16515306	16532164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_16516042_16516093_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
24780	chr5	-	2067	6	NIC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	20	49	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	100.608945924306	933	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTTTTTATAATC	5723	False	NA	NA	False	NA	NA	NA	150588791	150566415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588615
24781	chr8	-	2545	7	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	16	-3	intron_retention	FALSE	canonical	3	23	junction_6	167.814795401227	9	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGCTAGAATATATTGTT	NA	False	NA	NA	False	NA	NA	NA	110335239	110320111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110320764_110321251_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110335171
24782	chr14	+	3689	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	33	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	116.719089851351	1	144	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32044008	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047957_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
24784	chr3	+	2990	20	Antisense	novelGene_ENSMUSG00000027742.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	202	10	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCACTGCGCTTGTGCA	NA	False	NA	NA	False	NA	NA	NA	52889545	52924640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_52890612_52893820_52893901_52896529_52896584_52897378_52897488_52900175_52900342_52900858_52900991_52903426_52903547_52905677_52905768_52907899_52907964_52909663_52909755_52909829_52909960_52914663_52914760_52916472_52916545_52916893_52916974_52917992_52918111_52920327_52920385_52921234_52921307_52922220_52922298_52922891_52923033_52924465
24785	chr15	+	2832	5	NIC	ENSMUSG00000060992.10	novel	2438	8	NA	NA	17842	0	intron_retention	FALSE	canonical	3	961	junction_4	29.3853705098302	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGTGTGATGGCTC	NA	False	NA	NA	False	NA	NA	NA	103199180	103208292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313
24786	chr11	-	3993	21	FSM	ENSMUSG00000057897.15	ENSMUST00000093355.12	1973	21	-12	-2008	-12	7	multi-exon	FALSE	canonical	3	14	junction_5	41.4625131896271	6	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	3028	False	NA	NA	False	NA	NA	NA	6015594	5919660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5927811_5927941_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
24788	chr17	+	1784	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	15	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	714.925093978383	17	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTGTCTGTAAGTGC	NA	False	NA	NA	False	NA	NA	NA	35460795	35472667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470490_35471722_35471833_35471939_35472085_35472182_35472331_35472448
24789	chr14	+	1945	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	10	2788	10	1272	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	2	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359920	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
24790	chr6	-	2125	6	NIC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	0	2	intron_retention	FALSE	canonical	3	57	junction_5	694.444065422119	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATGCCAGGAGATTG	NA	False	NA	NA	False	NA	NA	NA	124942475	124935373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124942364
24791	chr18	+	2918	11	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	0	782	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	868.496407591879	1	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCCAGGAGCCTATTGT	472	False	NA	NA	False	NA	NA	NA	61688388	61722157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710319_61711737_61711845_61713409_61713563_61720496_61721407_61721587
24792	chrX	-	2895	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	64	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.985430169514	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGAGACTGTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	149800254	149766135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766795_149768766_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797147_149800196
24793	chr7	-	2896	8	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-18	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.633050574122	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATTGGAGCTTACGTTT	NA	False	NA	NA	False	NA	NA	NA	42155182	42122824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123171_42124330_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
24794	chr19	+	3173	1	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	12089	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAATCTTTTATACTGCAT	NA	False	NA	NA	False	NA	NA	NA	10521841	10525014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10521800_10525000
24795	chrX	+	1815	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8302	0	-1793	0	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	3722	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74147761	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
24796	chr11	-	3294	8	ISM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	21526	9	-2657	-6	3prime_fragment	FALSE	canonical	3	124	junction_6	25.3707207108461	289	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGATACCTTTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	118159531	118150485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369
24797	chr2	-	1950	5	Antisense	novelGene_ENSMUSG00000035772.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	349	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCCCGGCAGAGCGCC	NA	False	NA	NA	False	NA	NA	NA	28361177	28358077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_28358151_28358250_28358371_28358831_28358961_28359432_28359717_28359833
24798	chr1	-	1915	5	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	5	intron_retention	FALSE	canonical	3	5309	junction_1	795.567211177032	11	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174626	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173559_16173733
24799	chr7	+	2257	7	NNC	ENSMUSG00000045411.17	novel	872	5	NA	NA	97	-16	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	331.47083833524	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGGTTCATTGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	43896338	43901720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896472_43896661_43896841_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
24800	chr1	+	2620	6	NIC	ENSMUSG00000026520.9	novel	1580	7	NA	NA	0	-18	intron_retention	FALSE	canonical	3	1025	junction_2	56.3183806585381	108	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTTATTTATTTTTGAG	16	False	NA	NA	False	NA	NA	NA	180731857	180735634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180732096_180732308_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
24801	chr15	-	2850	14	FSM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	42	14	-2	-14	multi-exon	TRUE	canonical	0	0	junction_12	66.7675469479281	266	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCTGGTTATGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	89239820	89235220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558
24802	chr5	-	2119	14	NNC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	160.935063533576	479	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACATTAGCTGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	22755368	22691490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753040_22755189
24803	chr12	+	3237	1	Genic_Genomic	ENSMUSG00000044147.9	novel	NA	NA	NA	NA	594	2197	mono-exon	FALSE	NA	NA	NA	NA	NA	502	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGTTATGTTACTT	NA	False	NA	NA	False	NA	NA	NA	69419517	69422754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_69419500_69422800
24804	chr11	-	2650	12	NIC	ENSMUSG00000025137.16	novel	1486	13	NA	NA	0	-3	intron_retention	FALSE	canonical	3	99	junction_7	95.557520213856	5	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCTGTAGGCTCCCGAC	NA	False	NA	NA	False	NA	NA	NA	120508695	120500915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120504204_120504250_120504466_120504552_120505156_120506279_120506674_120506764_120508589
24805	chrX	-	3081	5	NIC	ENSMUSG00000002015.6	novel	1219	8	NA	NA	1284	-6	intron_retention	FALSE	canonical	3	2707	junction_1	144.670314854154	14	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGGTGTTTGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	72758497	72729789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398
24806	chr1	+	2239	12	NNC	ENSMUSG00000025962.16	novel	4486	12	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	126.651144474475	820	18	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTGGATCAGCTGGCTGA	NA	False	NA	NA	False	NA	NA	NA	63769787	63791625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63769851_63770558_63771381_63773890_63773995_63774664_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
24807	chr17	-	524	2	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	1307	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45879355	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879175
24808	chr14	+	2867	10	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	32	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	24.6666666666667	1	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCAGTGTACGTGGCC	NA	False	NA	NA	False	NA	NA	NA	70004965	70021857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015161_70015265_70017952_70018023_70019680_70019896_70020021_70021017_70021162
24809	chr19	-	2700	5	NIC	ENSMUSG00000025024.8	novel	1948	6	NA	NA	-22	-5	intron_retention	FALSE	canonical	3	184	junction_3	29.8161030317511	16	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATCTCCAGTGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	53379031	53367831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_53369033_53369671_53369826_53371987_53373028_53377733_53377854_53378846
24810	chr8	-	3324	20	ISM	ENSMUSG00000000759.15	ENSMUST00000164774.8	3515	21	8104	2	-6361	0	3prime_fragment	TRUE	canonical	3	10	junction_12	37.4219779291924	4	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTCATGTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	12713995	12664278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931
24814	chr16	+	2942	8	FSM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	31	69	-24	-6	multi-exon	FALSE	canonical	3	17	junction_1	99.4786409235671	685	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCTAAATTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	36514370	36547097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
24816	chr12	+	2042	24	NIC	ENSMUSG00000020952.11	novel	2096	25	NA	NA	-4	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	103.364789813345	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAGCTTATTCTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	51424358	51496882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
24817	chr5	+	2831	14	FSM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	4	1	-1	-1	multi-exon	FALSE	canonical	3	24	junction_1	21.6682900317355	205	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGAGTGATCAGCTAGC	NA	False	NA	NA	False	NA	NA	NA	112490964	112526279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_112491030_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
24818	chr3	-	2357	7	FSM	ENSMUSG00000027506.16	ENSMUST00000134788.8	673	7	13	-1697	13	156	multi-exon	FALSE	canonical	0	0	junction_1	1284.12148957955	57	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACCAATTAGTCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	9069525	8994501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9068347_9068495_9069464
24819	chr4	-	2765	16	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-5	-10	intron_retention	FALSE	canonical	3	13	junction_12	262.391175325865	11	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTCTGATTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	155845530	155825107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155839386_155839500_155840135_155840196_155840517_155840620_155841548_155841626_155845258
24820	chr13	-	2929	5	NIC	ENSMUSG00000021660.15	novel	888	6	NA	NA	3	0	intron_retention	FALSE	canonical	3	6398	junction_4	237.468945338122	25	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453501	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_98446710_98447488_98449802_98450146_98450261_98452737_98452807_98453373
24821	chr4	-	1718	13	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	551.639576374123	61	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	8830	False	NA	NA	False	NA	NA	NA	129436484	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410199_129411158_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
24822	chr11	+	1478	11	ISM	ENSMUSG00000007739.11	ENSMUST00000020562.5	1634	13	5338	-186	364	186	3prime_fragment	FALSE	canonical	3	4905	junction_3	309.890125689735	1	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22945987	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
24823	chr5	-	2141	13	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	0	4	combination_of_known_junctions	FALSE	canonical	3	18	junction_12	221.822564226456	11	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTGTTAATTTAAGTTAC	4354	False	NA	NA	False	NA	NA	NA	123887444	123866782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123884834_123884934_123887351
24824	chr6	-	2741	7	NIC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	26	-17	intron_retention	FALSE	canonical	3	942	junction_6	58.4921647174503	5	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCATAGAAACTTTACTG	2219	False	NA	NA	False	NA	NA	NA	113717662	113705039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113706704_113707295_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
24825	chr1	+	2587	14	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-5	1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_9	122.651234986799	1	40	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9780	False	NA	NA	False	NA	NA	NA	175708373	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
24826	chr3	-	1219	3	ISM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	5341	438	5253	-438	intron_retention	FALSE	canonical	3	334	junction_2	5	3	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAGTGTACCTCACACC	9079	False	NA	NA	False	NA	NA	NA	89313835	89310411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89310609_89310702_89310777_89312887
24827	chrUn_JH584304v1	+	2042	6	Intergenic	novelGene_4614	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	25	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTATGTAACCACGCCCTC	NA	False	NA	NA	False	NA	NA	NA	52196	59012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_52372_53539_54478_54718_54868_55111_55247_55506_55704_58564
24828	chr18	-	2268	18	NNC	ENSMUSG00000053644.14	novel	1914	18	NA	NA	-41	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	101.137099042677	961	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAAAGATAGGTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	56695339	56659822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56666858_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
24829	chr5	-	2800	20	NNC	ENSMUSG00000037364.13	novel	2988	20	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	312.006978400543	1	75	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTAACTGTGTGCTGTA	8278	False	NA	NA	False	NA	NA	NA	137305915	137293978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297133_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305328_137305442_137305814
24830	chr4	+	2771	15	ISM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	30	0	0	0	intron_retention	FALSE	canonical	3	129	junction_3	18.407102666401	290	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	141171994	141194536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984
24831	chrX	+	1777	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	755.657869889893	5	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTTTGGGTGTACTGTC	NA	False	NA	NA	False	NA	NA	NA	139357354	139376886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917_139376065_139376256
24833	chr8	-	2207	15	NNC	ENSMUSG00000031575.19	novel	2234	15	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	898.359823483319	2	71	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCAAGCTTGTATGGT	NA	False	NA	NA	False	NA	NA	NA	26330107	26306918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318885_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039
24834	chr2	+	2087	16	ISM	ENSMUSG00000000194.14	ENSMUST00000056433.7	6134	18	10	9008	-7	-295	5prime_fragment	FALSE	canonical	1	139	junction_14	92.4117356664666	31	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCTGAAAGGTCAAACAGA	NA	False	NA	NA	False	NA	NA	NA	31042337	31099779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858_31081903_31097690_31097741_31099078
24835	chr16	+	1835	12	NNC	ENSMUSG00000022945.13	novel	1922	14	NA	NA	277	0	intron_retention	TRUE	non_canonical	0	0	junction_9	272.023182045663	2	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4944	False	NA	NA	False	NA	NA	NA	93681366	93703003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691875_93696910_93697033_93697858_93698245_93701893_93701986_93702792
24836	chr6	+	2859	18	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	0	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	318.038614878183	2	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCGTCTCATCCCTATG	NA	False	NA	NA	False	NA	NA	NA	87864909	87889526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87870261_87870578_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881841_87889224
24837	chr7	+	2261	12	Intergenic	novelGene_3034	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	39	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCCTTCCCTTCTTCGGC	3438	False	NA	NA	False	NA	NA	NA	126626903	126641571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_126627166_126627243_126627455_126628086_126628149_126628506_126628675_126630102_126630275_126631805_126631937_126632053_126632562_126632637_126632848_126633046_126633204_126633294_126633426_126634920_126635110_126641511
24838	chr13	-	2354	8	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	7	382	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	93.706881240583	2	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGCCATGTGTCTAGGC	6815	False	NA	NA	False	NA	NA	NA	62860560	62846837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848090_62848342_62848433_62848517_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62855967_62856024_62860451
24839	chr11	-	2538	16	NNC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	112.44285462205	1	34	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6838	False	NA	NA	False	NA	NA	NA	54853745	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814919_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54824830_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
24840	chr13	-	2398	18	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	11	-145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.396266677077	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGACTTACATTTTG	NA	False	NA	NA	False	NA	NA	NA	9046108	9022660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023083_9023156_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037968_9039078_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
24841	chr17	-	2999	6	NIC	ENSMUSG00000024436.17	novel	1079	7	NA	NA	5	3	intron_retention	FALSE	canonical	3	1264	junction_3	62.2298963521554	18	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTTGACTCCCTTTGGG	4301	False	NA	NA	False	NA	NA	NA	36227276	36221274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36221849_36222310_36222371_36223229_36225295_36225383_36225482_36225587_36225697_36227183
24842	chr9	+	2171	16	NIC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	3	0	intron_retention	FALSE	canonical	3	461	junction_11	117.901013095261	1158	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21914316	21925518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924463_21925207
24843	chr8	+	3515	7	NIC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	59	0	intron_retention	FALSE	canonical	3	1283	junction_6	40.7979438479713	2	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	789	False	NA	NA	False	NA	NA	NA	70755504	70765640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70757347_70758284_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
24844	chr2	-	3270	11	NIC	ENSMUSG00000039536.17	novel	3569	12	NA	NA	10	-129	intron_retention	FALSE	canonical	3	9	junction_5	87.1922588307012	8	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACATGGTTCTGAGCGCC	NA	False	NA	NA	False	NA	NA	NA	166838175	166789597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
24845	chr5	-	1142	1	Antisense	novelGene_ENSMUSG00000096617.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATACGGCCAAATCCGTT	NA	False	NA	NA	False	NA	NA	NA	96010752	96009610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96009600_96010800
24846	chr5	+	2091	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	59	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	739.320333519616	9	76	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAAGTTTTGATTCTTAA	NA	False	NA	NA	False	NA	NA	NA	45650774	45669922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664546_45666779_45666860_45668449_45668560_45669222
24847	chr8	-	2101	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	1167	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	1857.40316032896	4	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43758806	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43756745_43756865_43757512_43757597_43758460
24848	chr14	-	2099	19	NNC	ENSMUSG00000022040.9	novel	2035	19	NA	NA	2	-19	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	48.8157596997294	950	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCTAAACCTCAGGGCT	NA	False	NA	NA	False	NA	NA	NA	66361947	66321844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66322210_66322379_66322439_66322659_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
24850	chr19	-	1943	16	NIC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-26	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	506.574228409706	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGAGACCTTTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	27407251	27367461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_27367714_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
24851	chr15	+	4943	21	NIC	ENSMUSG00000047888.11	novel	17332	25	NA	NA	-52	4373	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	6.05475020128824	17	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATCTCCTTGGAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	80595461	80807809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80595690_80631606_80631675_80643740_80643832_80668939_80669008_80742881_80742970_80748585_80748608_80760517_80760863_80763067_80765408_80768407_80768584_80771159_80771235_80772030_80772077_80773219_80773357_80778529_80778656_80786084_80786217_80786488_80786588_80786720_80786914_80797505_80797644_80800884_80801062_80802151_80802299_80802711_80802808_80807658
24852	chr14	+	2003	9	ISM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	2021	952	5	0	internal_fragment	FALSE	canonical	3	1356	junction_4	130.261215927842	1	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	NA	False	NA	NA	False	NA	NA	NA	55779866	55786329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
24853	chrX	+	1031	4	Intergenic	novelGene_4107	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGACACTGAGAAGAGGG	NA	False	NA	NA	False	NA	NA	NA	168794336	168800305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_168794722_168796239_168796680_168797129_168797193_168800162
24855	chr19	+	4702	23	Intergenic	novelGene_1187	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAATGGCGGACGTATC	NA	False	NA	NA	False	NA	NA	NA	3505001	3625713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_3507051_3509359_3509481_3514544_3514696_3516492_3516607_3517145_3517295_3519640_3519763_3520970_3521101_3521977_3522034_3523768_3523866_3528276_3528363_3534828_3534924_3536981_3537091_3540772_3540839_3542365_3542515_3543884_3544041_3546523_3546650_3557239_3557355_3561927_3562042_3564653_3564720_3568244_3568383_3571733_3571918_3576698_3576935_3625640
24856	chr1	+	3783	5	NNC	ENSMUSG00000036206.13	novel	4995	6	NA	NA	60979	-1274	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	49.7462310130124	6	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTATGTTCTTTAAAGG	NA	False	NA	NA	False	NA	NA	NA	89059153	89081516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_89059478_89065280_89065526_89071271_89073629_89079921_89080111_89080848
24857	chr3	+	3255	12	NIC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-32	-10	intron_retention	FALSE	canonical	3	1234	junction_7	101.024585830127	3	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTGTCCTAGAAGCGTG	NA	False	NA	NA	False	NA	NA	NA	32762881	32781107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772624_32772715_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
24858	chr2	+	1117	9	FSM	ENSMUSG00000074698.11	ENSMUST00000136063.2	1559	9	0	442	0	-442	multi-exon	FALSE	canonical	2	55	junction_1	38.0195262332397	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTAAGTCCTTTAGTCC	NA	False	NA	NA	False	NA	NA	NA	152068795	152114818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547
24859	chr1	+	2510	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	31	-341	0	341	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	401	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCTTTGGGTATTTCAT	NA	False	NA	NA	False	NA	NA	NA	185064376	185090315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
24860	chr2	+	1754	10	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	588	0	187	0	3prime_fragment	FALSE	canonical	3	1876	junction_7	222.148154323046	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	130116937	130121233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
24861	chr3	+	3169	6	NNC	ENSMUSG00000075700.11	novel	3157	6	NA	NA	20	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	48.3718926650591	707	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCTTTGTGAAAATGAT	NA	False	NA	NA	False	NA	NA	NA	58484076	58500556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497557_58497742_58498115
24862	chr11	+	2051	13	NIC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	3	1	intron_retention	FALSE	canonical	3	682	junction_1	160.515748621609	226	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	1427	False	NA	NA	False	NA	NA	NA	120675133	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
24863	chr12	+	2001	8	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	124.328399894828	5	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157673	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162094_85175149_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
24864	chr3	-	2223	5	NNC	ENSMUSG00000027944.14	novel	1280	6	NA	NA	-6	-7	intron_retention	FALSE	canonical	0	0	junction_3	831.391416542172	22	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGCTAAAGGTCTTAGT	7261	False	NA	NA	False	NA	NA	NA	89905933	89902770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903748_89903954_89905311_89905834
24865	chr9	-	1520	9	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5942.38941314855	14	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAATCTGTGTTGGTCAA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386650_78386736_78386817_78386905_78387057_78387133_78387359_78387574_78387703_78387792_78387971_78388920
24866	chr19	-	3230	7	NNC	ENSMUSG00000040451.19	novel	3665	10	NA	NA	-573	1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	71.6860438920219	3	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGCTATTATATTGTG	7003	False	NA	NA	False	NA	NA	NA	32216799	32100128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32216726
24867	chr13	-	3914	11	FSM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	23	4	23	-2	multi-exon	FALSE	canonical	3	234	junction_10	160.927934181732	650	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTGCCTCTGGCTGCT	NA	False	NA	NA	False	NA	NA	NA	54835598	54827215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835306
24869	chr13	-	3077	11	NIC	ENSMUSG00000034928.17	novel	3797	11	NA	NA	3	-682	combination_of_known_junctions	FALSE	canonical	3	163	junction_9	200.392015809014	10	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCATGGACTGTGTCGGC	NA	False	NA	NA	False	NA	NA	NA	54841622	54827908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831033_54831407_54831576_54831773_54831964_54832150_54832302_54841541
24870	chr12	+	2147	18	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	-2	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	203.492958313169	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTAGTTTCTCCGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	21336356	21364824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347846_21350068_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
24871	chr6	-	2126	13	NIC	ENSMUSG00000029782.21	novel	2273	15	NA	NA	901	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	268.584393420185	7	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	945	False	NA	-49	True	NA	NA	NA	30508802	30482413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30482985_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664
24872	chr13	-	3627	14	ISM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	1404	10	1177	-10	3prime_fragment	FALSE	canonical	3	277	junction_10	43.1618667988553	2	147	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATATCAAGCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	68728836	68708908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669
24873	chr12	+	549	2	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAGATAGGAGTGCAGT	NA	False	NA	NA	False	NA	NA	NA	110657599	110658612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658088_110658551
24874	chr14	+	1872	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3045.5246137307	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGGCAGGGTGCACG	NA	False	NA	NA	False	NA	NA	NA	63359964	63380581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375549_63375799_63375944_63376447_63376565_63379189_63379312_63379680
24875	chr17	+	2059	17	NNC	ENSMUSG00000002372.10	novel	2567	17	NA	NA	0	-532	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	143.961312077238	1	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCAGGTCCACATGGCA	NA	False	NA	NA	False	NA	NA	NA	56980380	57018232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56980412_56993005_56993062_56999520_56999722_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014810_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
24876	chr1	-	2202	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2448.45885722227	1	92	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCAGACTTAATACTTC	NA	False	NA	NA	False	NA	NA	NA	86287098	86278218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280249_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86284935_86285114_86285175_86285828_86285946_86286927
24877	chr1	-	5556	8	FSM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	17	-2195	3	1	multi-exon	FALSE	canonical	3	121	junction_1	29.2707278728098	114	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAGAGTTTCTACTCCCT	NA	False	NA	NA	False	NA	NA	NA	36484335	36458950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
24878	chrX	+	613	3	ISM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	1628	0	0	0	3prime_fragment	FALSE	canonical	3	11014	junction_2	384.5	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36060931	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_36060983_36061388_36061530_36062039
24879	chr2	-	2523	7	Antisense	novelGene_ENSMUSG00000014077.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGCCAGGGGTCAAGAAG	956	False	NA	NA	False	NA	NA	NA	119417505	119378261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119378399_119391211_119391282_119397127_119397211_119402247_119402375_119411172_119411242_119415014_119415136_119415589
24880	chr1	-	2330	13	FSM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	-712	5	-712	-5	multi-exon	FALSE	canonical	3	1142	junction_12	107.460457843804	2450	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGCTTGTAATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	171075403	171062426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
24882	chr7	-	2560	2	ISM	ENSMUSG00000074129.15	ENSMUST00000209815.2	503	7	-19	-236	-1	0	intron_retention	FALSE	canonical	3	15796	junction_1	0	2	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778145	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44775662_44775901
24883	chr12	-	3474	21	NNC	ENSMUSG00000015143.16	novel	3734	21	NA	NA	-36321	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	89.7757623192363	352	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGACATTACTTTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	80267943	80214325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_80215255_80215631_80215791_80217472_80217541_80218502_80218650_80219736_80219917_80220853_80220989_80221233_80221417_80222929_80223071_80223961_80224071_80225075_80225227_80228134_80228283_80230166_80230398_80231580_80231674_80239141_80239228_80240409_80240492_80243168_80243248_80243699_80243788_80245754_80245842_80251735_80251856_80256132_80256248_80267800
24884	chrX	+	1905	15	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	793.153937371143	17	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCAGATGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	20529169	20548935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539133_20548722
24885	chr11	+	5255	32	FSM	ENSMUSG00000017774.20	ENSMUST00000069057.13	4547	32	15	-723	15	723	multi-exon	FALSE	canonical	3	188	junction_1	33.5644192461903	287	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAAAATGTC	8858	False	NA	NA	False	NA	NA	NA	75542350	75565459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75542492_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561117_75561368_75561453_75562018_75562113_75562205_75562262_75562412_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
24886	chr4	+	2173	12	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	119	-375	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	677.754154701302	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTTCTGCACGGAGTCT	974	False	NA	NA	False	NA	NA	NA	129083813	129113025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090677_129090765_129090905_129091136_129099885_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
24887	chr14	+	3655	10	FSM	ENSMUSG00000021895.11	ENSMUST00000224981.2	3618	10	-37	0	-37	0	multi-exon	FALSE	canonical	3	20	junction_1	14.3716112484489	60	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	NA	NA	NA	27057985	27125868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_27058227_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
24888	chr17	-	4501	4	FSM	ENSMUSG00000023961.17	ENSMUST00000143137.2	4445	4	-49	-7	-4	-1	multi-exon	FALSE	canonical	2	9	junction_3	11.5854314646552	59	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCAGCCTTCTTAATTT	NA	False	NA	NA	False	NA	NA	NA	44416704	44407199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416601
24889	chr17	+	1752	2	Genic_Genomic	ENSMUSG00000061062.6	novel	1444	1	NA	NA	-43	527	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAATATCTAATAA	NA	False	NA	NA	False	NA	NA	NA	78798967	78800981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_78800404_78800665
24890	chr10	+	2761	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	-26	-2	-2	2	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	1	94	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171905	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
24891	chr10	+	2092	15	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-4	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	274.541742486178	26	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171912	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212930_21223227_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
24892	chr11	-	914	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	12	417	12	-40	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	84	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACTCCCTGCCTCTTCTC	9953	False	NA	NA	False	NA	NA	NA	69812200	69807962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
24894	chr10	-	1923	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	13	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	610.171851930986	1	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAGCCCTTAATGTCTTA	NA	False	NA	NA	False	NA	NA	NA	116899706	116886914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888934_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
24895	chr11	-	1079	1	FSM	ENSMUSG00000082454.4	ENSMUST00000120566.2	1848	1	-75	844	-75	-844	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCATGAGTGAGAAGGAGA	NA	False	NA	NA	False	NA	NA	NA	48644616	48643537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_48643500_48644600
24896	chrX	+	3978	34	NNC	ENSMUSG00000031295.14	novel	3947	34	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	19.0057262648391	97	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	NA	False	NA	NA	NA	159285157	159374137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159285289_159285715_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
24897	chr9	+	3900	12	FSM	ENSMUSG00000025899.15	ENSMUST00000211933.2	7674	12	10	3764	-5	-447	multi-exon	FALSE	canonical	2	35	junction_1	12.2683493875181	71	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTGTAGCAAAATTATAG	2	True	NA	NA	False	NA	NA	NA	3335487	3387390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_3335595_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
24898	chrX	-	2458	11	NNC	ENSMUSG00000031134.17	novel	2139	10	NA	NA	0	176	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	28.0087486332396	150	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTTGTGGTGTTGGG	NA	False	NA	NA	False	NA	NA	NA	56438341	56428713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_56429922_56430492_56430582_56431500_56431644_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
24899	chr11	+	3049	9	NNC	ENSMUSG00000011256.17	novel	1747	12	NA	NA	2224	-1343	intron_retention	FALSE	non_canonical	0	0	junction_8	168.082568995122	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGATGAAAGAATATTACC	NA	False	NA	NA	False	NA	NA	NA	46027172	46036827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618_46036429_46036493
24900	chr2	+	1062	10	NNC	ENSMUSG00000074698.11	novel	1559	9	NA	NA	12	-1384	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	54.735728733616	2	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTACTGGGCAGGGCAGAG	NA	False	NA	NA	False	NA	NA	NA	152068844	152122388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114771_152122346
24901	chr14	-	3748	21	FSM	ENSMUSG00000033712.7	ENSMUST00000035612.7	3725	21	-23	0	-23	0	multi-exon	FALSE	canonical	0	0	junction_8	38.4373191052654	126	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	70391283	70375616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
24902	chr2	+	2759	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	-12	-12	5	12	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	38	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTGGAGCCCTGACATAA	NA	False	NA	NA	False	NA	NA	NA	115412201	115609261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
24903	chr6	+	2235	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	279	1	0	-1	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	1	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGCTTTGTCGTTTGTGC	2943	False	NA	NA	False	NA	NA	NA	122285957	122294638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
24904	chr1	+	3975	28	Intergenic	novelGene_419	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	165	12	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGCTACGCTTGACCT	NA	False	NA	NA	False	NA	NA	NA	93335876	93406522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_93335984_93336092_93336220_93336410_93336525_93336674_93336859_93340084_93340227_93341212_93341350_93341551_93341653_93342532_93342689_93344222_93344361_93344894_93345120_93345192_93345412_93347790_93348013_93348808_93348938_93349064_93349150_93350983_93351098_93351489_93351596_93352987_93353129_93355279_93355359_93355869_93355973_93357097_93357194_93357811_93358029_93358678_93358890_93359026_93359243_93364819_93365019_93365961_93366107_93368403_93368517_93369910_93369971_93406433
24905	chr10	-	2143	6	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-2	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	416.40048030712	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTTAAGTTTGTAGTTT	5255	False	NA	NA	False	NA	NA	NA	62322527	62291054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62316336_62316487_62322436
24906	chr2	+	5014	8	FSM	ENSMUSG00000027281.17	ENSMUST00000099311.9	5089	8	70	5	70	-5	multi-exon	FALSE	canonical	3	13	junction_4	4.68170560233541	50	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTAAGTTTGTTGTGC	NA	False	NA	NA	False	NA	NA	NA	136734157	136913865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_136734282_136747462_136747521_136842103_136842194_136846853_136846975_136885919_136885998_136888636_136888726_136908049_136908151_136909512
24907	chr18	+	826	1	NIC	ENSMUSG00000024404.8	novel	3790	13	NA	NA	-716	-475	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAGGAAAAGAAGTTCAAT	NA	False	NA	NA	False	NA	NA	NA	12269036	12269862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_12269000_12269900
24908	chr7	+	1673	6	NNC	ENSMUSG00000078786.10	novel	1748	7	NA	NA	-8777	-7990	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2954	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACGCGAGGGAACGGACC	NA	False	NA	NA	False	NA	NA	NA	26886428	26895596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_26886788_26888288_26888960_26891029_26891206_26892294_26892468_26894868_26894982_26895415
24909	chr4	-	2777	5	FSM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	252	0	239	0	multi-exon	FALSE	canonical	3	1140	junction_2	61.7267162580353	437	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAATCTCTTTGTTTTTT	-6	True	NA	NA	False	NA	NA	NA	55532214	55527142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629_55531751_55531866
24910	chr4	-	3266	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	29	3	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	4297	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTTATGTTTGAGTG	2521	False	NA	NA	False	NA	NA	NA	129229134	129200889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
24911	chr17	-	1753	5	NIC	ENSMUSG00000024026.14	novel	2024	7	NA	NA	21	0	intron_retention	FALSE	canonical	3	11	junction_4	1328.21157953091	31	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	30821308	30811834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30821220
24912	chr11	+	3847	15	NNC	ENSMUSG00000037791.16	novel	4410	15	NA	NA	-14	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	34.6053552538462	197	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTTTTCTGCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	77873613	77921362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_77873683_77874894_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142
24913	chr3	-	2330	11	ISM	ENSMUSG00000033439.13	ENSMUST00000041524.11	3402	12	19704	-467	4	467	3prime_fragment	FALSE	canonical	3	87	junction_7	13.8524366087703	411	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAATAATAAGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	116388532	116374274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
24915	chr3	+	1874	9	NNC	ENSMUSG00000078578.10	novel	1512	8	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1233.71111260903	50	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	NA	False	NA	NA	NA	135144057	135172436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164636_135165735_135165842_135168710_135168805_135170955_135171148_135171338
24916	chr10	-	3125	6	NNC	ENSMUSG00000020079.16	novel	2604	15	NA	NA	-2669	-5	intron_retention	FALSE	canonical	2	5	junction_4	133.36776222161	22	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTCATTTTTGTAATT	NA	False	NA	NA	False	NA	NA	NA	62271575	62264992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62265614_62266249_62268245_62268830_62268912_62270173_62270357_62271237_62271332_62271424
24918	chr16	-	3877	6	Fusion	ENSMUSG00000022505.10_ENSMUSG00000116270.2	novel	3440	5	NA	NA	-5339	-15	multi-exon	FALSE	canonical	1	2	junction_4	65.4113140060647	14	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTTAAAGAATTTGGATAA	NA	False	NA	NA	False	NA	NA	NA	10154488	10099627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10146083_10146285_10154080
24919	chr5	+	1805	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	29	-1	29	1	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	1442	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTCATACAGACGTG	NA	False	NA	NA	False	NA	NA	NA	100187872	100216620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
24920	chrX	+	3325	18	Antisense	novelGene_ENSMUSG00000036916.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	103	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAGTACTTCCAAAAATTC	NA	False	NA	NA	False	NA	NA	NA	47631209	47680693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_47632166_47632426_47632580_47636140_47636203_47637434_47637566_47638921_47639239_47642855_47642986_47647145_47647300_47647928_47648027_47648546_47648700_47652556_47652780_47655584_47655695_47655825_47655989_47657995_47658103_47661157_47661299_47661628_47661689_47667256_47667431_47677577_47677627_47680549
24921	chr11	+	1810	1	Antisense	novelGene_ENSMUSG00000020740.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATTCTCTCACGCTTAC	6783	False	NA	NA	False	NA	NA	NA	115475081	115476891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115475100_115476900
24922	chr4	+	2255	15	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-24	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	197.714298616845	2	49	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGCCATTAGGAACTGTG	NA	False	NA	NA	False	NA	NA	NA	124923826	124949162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934910_124937347_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
24923	chr8	+	2904	18	NNC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-9	-21	intron_retention	FALSE	non_canonical	0	0	junction_6	91.3159464503575	2	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACGCTTCCCTTCTG	4575	False	NA	NA	False	NA	NA	NA	3681142	3692767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684681_3684792_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
24924	chr7	-	2075	5	NNC	ENSMUSG00000025102.15	novel	504	4	NA	NA	0	3109	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_4	96.0325465662553	574	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGAAAGATACATCATAGTG	NA	False	NA	NA	False	NA	NA	NA	81439213	81428820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81438999
24926	chr17	+	2679	19	NNC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-6	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	44.7593013990209	16	14	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCACAGCAACCCTGCCA	NA	False	NA	NA	False	NA	NA	NA	64171003	64446203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288592_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
24927	chr15	-	4726	17	NNC	ENSMUSG00000022246.15	novel	4732	17	NA	NA	-681	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_16	51.5263509648219	5	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGATTTGTGGTGTTTGTG	8159	False	NA	NA	False	NA	NA	NA	10715391	10569055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10715291
24928	chr8	-	4318	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	9	1	9	-1	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	65	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCTGAGTCTGATAACAA	NA	False	NA	NA	False	NA	NA	NA	66939162	66925770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
24929	chr9	+	3138	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	-34	3	-34	-3	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	1025	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATGATTTTTATTATT	NA	False	NA	NA	False	NA	NA	NA	44953688	44965310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
24930	chr5	-	2896	7	NNC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	3	765	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	113.996588642916	66	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGAAGTGGTGATCTTT	5475	False	NA	NA	False	NA	NA	NA	150589039	150530706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_150531906_150566633_150566781_150570465_150570543_150570924_150571014_150574129_150574205_150584743_150585979_150588965
24931	chr19	+	310	3	NNC	ENSMUSG00000056201.9	novel	771	3	NA	NA	19	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3173	62	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGGCTTTTGGGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	5540562	5544058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542664_5543955
24934	chr15	-	4834	18	Antisense	novelGene_ENSMUSG00000047888.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	13	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTCTCTAAAGGAAGCAG	NA	False	NA	NA	False	NA	NA	NA	80807803	80682801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80683004_80742879_80742974_80760513_80760859_80763063_80765405_80767141_80767304_80768407_80768582_80771157_80771232_80772027_80772075_80773217_80773355_80778527_80778654_80786082_80786216_80786487_80786585_80786714_80786911_80797502_80797643_80800883_80801060_80802149_80802297_80802709_80802806_80807656
24935	chr13	-	3765	7	NIC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	-38	0	intron_retention	FALSE	canonical	3	328	junction_5	16.739839372653	33	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	339	False	NA	NA	False	NA	NA	NA	67081190	67060181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
24936	chr18	+	2257	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	43	10	43	-10	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	2139	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGACTGCCACAGTGACT	6659	False	NA	NA	False	NA	NA	NA	36926971	36932709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
24937	chr5	+	902	7	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	4	31	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	1204.31041817852	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTCTTCTGTAATAACA	331	False	NA	NA	False	NA	NA	NA	77099198	77110357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099279_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273
24938	chr4	-	2836	8	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	543.246702329464	1	108	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTGTCTTGTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	141327231	141303373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141317331_141317437_141322534_141322791_141323205_141323260_141327158
24940	chr11	-	1632	10	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	1277.14381374521	10	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGACTTGCTGTTTTC	9743	False	NA	NA	False	NA	NA	NA	106890290	106879462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882786_106883455_106883494_106888044_106888162_106890184
24941	chr8	-	2285	16	Antisense	novelGene_ENSMUSG00000001909.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	78	4	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGGGCGGGCCAATCAC	6442	False	NA	NA	False	NA	NA	NA	85426409	85415917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_85416004_85416334_85416538_85417145_85417575_85417878_85418068_85421849_85421965_85422054_85422169_85423452_85423603_85423741_85423827_85423893_85423966_85424051_85424184_85424267_85424359_85424809_85424923_85425020_85425095_85425763_85425886_85425967_85426097_85426228
24942	chr17	-	5329	3	FSM	ENSMUSG00000071267.12	ENSMUST00000126485.2	2481	3	-10	-2838	-10	2838	multi-exon	FALSE	canonical	3	50	junction_2	18	8	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGTTCCATGGTAATGTG	NA	False	NA	NA	False	NA	NA	NA	22181455	22155887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_22160832_22172868_22173035_22181236
24943	chr1	+	4046	6	NIC	ENSMUSG00000026280.18	novel	4186	12	NA	NA	8101	64	intron_retention	FALSE	canonical	3	295	junction_1	21.2037732491177	3	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGACTGCCTAAACCCCA	NA	False	NA	NA	False	NA	NA	NA	93703899	93715685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93706087_93708439_93708634_93712133_93712213_93712474_93713689_93714232_93714327_93715407
24944	chr7	-	3441	12	FSM	ENSMUSG00000044465.20	ENSMUST00000048079.14	3443	12	-5	7	1	-6	multi-exon	FALSE	canonical	3	83	junction_4	97.8877751760945	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCTATTCTGTGCTCAT	NA	False	NA	NA	False	NA	NA	NA	105049214	105027824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
24945	chr19	-	1933	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-62	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1113.79418402818	2	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAACATTAAAGTCCTAA	NA	False	NA	NA	False	NA	NA	NA	15902356	15882522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892371_15894549_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
24946	chr10	-	2599	23	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	25	-950	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.631986103685	2	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGACAACATGACCAGAG	NA	False	NA	NA	False	NA	NA	NA	77845536	77823730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824066_77824141_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
24947	chrX	-	2140	5	NNC	ENSMUSG00000046942.18	novel	1854	4	NA	NA	-89	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	126.903506649738	808	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	78715130	78666836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_78668390_78671446_78671527_78673369_78673567_78685326_78685395_78714888
24949	chr19	+	2871	4	ISM	ENSMUSG00000024900.6	ENSMUST00000238027.2	839	6	3137	-1863	3137	-4	3prime_fragment	FALSE	canonical	3	335	junction_2	31.4960314960472	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATCATCTGTCCCTGT	NA	False	NA	NA	False	NA	NA	NA	3429480	3435729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_3430170_3431609_3431724_3431931_3432025_3433754
24950	chrX	-	1689	11	Antisense	novelGene_ENSMUSG00000062070.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACCTTCGGGCGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	105247220	105230757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_105230917_105235610_105235682_105237971_105238118_105238237_105238381_105240446_105240550_105241444_105241567_105243251_105243366_105243760_105243952_105246057_105246221_105246440_105246540_105246842
24951	chrX	+	3185	11	ISM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	15582	2	6495	-2	3prime_fragment	FALSE	canonical	3	339	junction_8	114.609990838495	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGGTGAGAGCATTCTT	NA	False	NA	NA	False	NA	NA	NA	158331245	158376075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
24952	chr14	+	1941	15	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	18	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	557.507266356965	1	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAGAAAAAAATTAATCCT	NA	False	NA	NA	False	NA	NA	NA	30271105	30295565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293_30295341_30295492
24953	chr7	-	3829	7	NIC	ENSMUSG00000025494.9	novel	1723	9	NA	NA	-108	-3	intron_retention	FALSE	canonical	3	121	junction_3	12.6940493495531	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCCGGGCTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	140676760	140671092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673244_140673639_140673839_140674694
24954	chr8	+	3500	15	FSM	ENSMUSG00000050079.11	ENSMUST00000211983.2	3397	15	-101	-2	0	2	multi-exon	FALSE	canonical	3	30	junction_1	38.5556184529014	100	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCACAGCTCTCATTGG	8139	False	NA	NA	False	NA	NA	NA	95328592	95386905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95328733_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
24955	chr10	-	4088	21	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	144	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	86.6294407231168	70	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTGCTTTGCTGATTG	NA	False	NA	NA	False	NA	NA	NA	61219165	61155439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61156821_61156865_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61219070
24956	chr11	-	3881	15	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9009	0	intron_retention	FALSE	non_canonical	0	0	junction_12	591.664531949775	3	153	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	415	False	NA	NA	False	NA	NA	NA	106615229	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588178_106590417_106590719_106605840_106606011_106615200
24958	chr9	-	2868	11	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	9	-10	combination_of_known_junctions	FALSE	canonical	3	47	junction_10	61.1735236846791	463	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCATTTTGAAAAAATTTA	9257	False	NA	NA	False	NA	NA	NA	26910836	26885449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
24959	chr6	-	2058	9	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	6	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	225.347752096621	30	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGCTATTGATTGCT	26	False	6217138	NA	False	NA	NA	NA	6217112	6041228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6114220_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
24960	chr11	-	1677	8	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	80	-48	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	397.183553927154	3	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTTGTTTGCTACAACT	NA	False	NA	NA	False	NA	NA	NA	115977718	115969446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115970423_115970533_115970611_115971047_115971169_115971367_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
24961	chr12	-	2651	1	Antisense	novelGene_ENSMUSG00000021908.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	76	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTAGTCTGGCCCCGCGAC	9523	False	NA	NA	False	NA	NA	NA	119227348	119224697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_119224700_119227300
24962	chr3	-	2696	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	67	19	0	-19	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	480	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTCTTTTTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	116456259	116424831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
24963	chr2	+	2168	7	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-1866	2	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	1454.29727207183	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGACTCCTCCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	162914798	162926610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162914835_162917555_162917696_162919711_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
24964	chr12	+	3458	13	FSM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	3	35	3	-31	multi-exon	FALSE	canonical	3	17	junction_5	48.9003379901975	16	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTTTATAAAAAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	81073584	81233153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
24965	chr13	+	2584	6	NNC	ENSMUSG00000039219.19	novel	571	5	NA	NA	-10606	-56844	intron_retention	FALSE	non_canonical	0	0	junction_1	0	23	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACTCAGTGCAAGAAAATA	NA	False	NA	NA	False	NA	NA	NA	14227210	14237960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_14229041_14229734_14229800_14232374_14232476_14233510_14233799_14233905_14234036_14237790
24966	chrX	+	3640	7	Fusion	ENSMUSG00000096508.8_ENSMUSG00000054994.3	novel	3677	5	NA	NA	0	2	multi-exon	FALSE	non_canonical	0	0	junction_4	106.492174986397	1	109	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCATGAGATTCATTTAAT	NA	False	NA	NA	False	NA	NA	NA	134334583	134405345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_134334711_134334908_134335036_134338727_134338783_134339279_134339345_134400199_134400317_134401619_134402205_134402781
24967	chr7	+	1728	1	FSM	ENSMUSG00000063902.14	ENSMUST00000051522.16	1378	1	-74	-276	-74	276	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCAGAGTGAGTGATTT	NA	False	NA	NA	False	NA	NA	NA	83405037	83406765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83405000_83406800
24968	chr5	+	3553	20	NNC	ENSMUSG00000029482.5	novel	3239	18	NA	NA	-9886	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	37.4549036321572	207	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGTACAAGTGCAGTACG	NA	False	NA	NA	False	NA	NA	NA	125542991	125594462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_125543184_125552544_125552719_125552917_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
24969	chr15	-	2436	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	38	245	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	759.402250311242	1	84	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAATTCAATCAATTAGG	-15	True	NA	NA	False	NA	NA	NA	11399649	11383845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385277_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
24970	chrUn_JH584304v1	-	2514	6	Intergenic	novelGene_4639	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	343.212470635902	2	65	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	58935	52668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53770_54335_54480_54726_54868_55111_55702_56985_57152_58563
24971	chr1	-	2376	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2646.3870760365	1	109	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287096	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278415_86278550_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281572_86282737_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
24972	chr2	-	2262	11	Antisense	novelGene_ENSMUSG00000065272.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTGCAGCAGAACCTGAAA	NA	False	NA	NA	False	NA	NA	NA	130121194	130116567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_130116641_130116948_130117064_130117579_130117743_130117893_130118093_130118353_130118543_130118625_130118778_130118950_130119051_130119393_130119540_130119762_130119888_130120072_130120209_130120330
24973	chr2	-	3456	15	NIC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	15	-1	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	59.708176379208	103	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTCCTATTCCAAATGT	NA	False	NA	NA	False	NA	NA	NA	91540906	91504964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
24974	chr14	+	1640	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-20	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6571	False	NA	NA	False	NA	NA	NA	76741949	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744271_76744354
24975	chr19	-	2078	19	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-11	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	354.98192007516	270	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTTTGGTTTAATGTCA	NA	False	NA	NA	False	NA	NA	NA	27407236	27367455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_27367624_27367669_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
24976	chr9	-	3656	23	Intergenic	novelGene_997	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	12	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGATGATTTCCCGTGTCG	NA	False	NA	NA	False	NA	NA	NA	22799576	22386936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_22387484_22387862_22387924_22402115_22402235_22408002_22408156_22415338_22415404_22425273_22425388_22478998_22479182_22486410_22486492_22489932_22490112_22490753_22490889_22540235_22540415_22546904_22546984_22550025_22550078_22555038_22555143_22557258_22557362_22566517_22566659_22570342_22570442_22582080_22582252_22590205_22590358_22705043_22705227_22723612_22723838_22798872_22798982_22799154
24977	chr9	+	1830	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	-47	0	-37	0	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	2009	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5030	False	NA	NA	False	NA	NA	NA	108539249	108561840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
24978	chr2	-	2271	12	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	21	-158	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	221.16390092956	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGGACCGTGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	103315449	103284351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307264_103315317
24979	chr12	+	1916	9	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	102	-61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2116.74770801222	1	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTTGAACTTTCATG	NA	False	NA	NA	False	NA	NA	NA	24758341	24764084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758416_24758947_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
24980	chr9	+	2095	12	NNC	ENSMUSG00000010048.11	novel	2056	12	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	204.439932377247	24	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCCCCCTGTGGCCTTT	NA	False	NA	NA	False	NA	NA	NA	107464924	107470227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107469038_107469273_107469403_107469474_107469571_107469673
24981	chr9	-	3001	18	NIC	ENSMUSG00000032498.10	novel	2754	19	NA	NA	55	-1	intron_retention	FALSE	canonical	3	71	junction_17	78.0064321720178	10	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGATTTTTTTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	111100547	111057323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_111057695_111058907_111059022_111059310_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097372_111100476
24982	chr14	-	3909	12	NNC	ENSMUSG00000022180.8	novel	4084	11	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.0026292875689	39	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGATGGAGTTAATAATCAT	NA	False	NA	NA	False	NA	NA	NA	55019369	54959665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54960090_54960246_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54995895_54996048_54996997_54997203_55018636
24983	chr18	+	2388	4	Antisense	novelGene_ENSMUSG00000032905.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTAGCAGCGTGAAGGGG	NA	False	NA	NA	False	NA	NA	NA	46865494	46874643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_46867577_46868321_46868385_46870461_46870509_46874447
24984	chr17	+	2389	8	NNC	ENSMUSG00000024188.17	novel	2670	9	NA	NA	-3	-11	intron_retention	FALSE	non_canonical	0	0	junction_7	230.366611101097	2	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTACTTTTATTATATGT	NA	False	NA	NA	False	NA	NA	NA	26471954	26499682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496556_26499123
24985	chr18	-	2074	12	NIC	ENSMUSG00000001380.8	novel	1989	13	NA	NA	38	-10	intron_retention	FALSE	canonical	3	550	junction_7	70.0841289021055	49	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCGCTAACCTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	36916220	36899590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
24986	chr1	+	2246	5	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	540.598915555701	5	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAGAAAGGGAGAGAGCG	NA	False	NA	NA	False	NA	NA	NA	180720672	180726659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014_180725513_180725730
24987	chr6	+	2730	22	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-30	-2	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	53.746739604748	148	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAAAATCATTCATATTC	143	False	NA	NA	False	NA	NA	NA	49372507	49446432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
24988	chr7	-	3161	4	Fusion	ENSMUSG00000108446.2_ENSMUSG00000092335.2	novel	1425	4	NA	NA	-11	2250	multi-exon	FALSE	non_canonical	0	0	junction_1	107.707422626711	1	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTAATTTGTTTTTCTTAT	NA	False	NA	NA	False	NA	NA	NA	42241982	42226956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_42227070_42227467_42230333_42232070_42232132_42241860
24989	chr17	+	2664	5	ISM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	31	-21	31	9	intron_retention	FALSE	canonical	3	324	junction_1	247.498863633755	45	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGTTCTGGATCTTG	NA	False	NA	NA	False	NA	NA	NA	48717072	48724303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248
24990	chr5	-	5991	42	NIC	ENSMUSG00000070733.14	novel	11340	63	NA	NA	-1	434	combination_of_known_junctions	FALSE	canonical	3	30	junction_16	13.2030317575442	39	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGTGTTCTGTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	73413963	73229809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_73230265_73231184_73231289_73231971_73232123_73233230_73233344_73234000_73234086_73238306_73238476_73240139_73240281_73240470_73240731_73242689_73242859_73243869_73243970_73244220_73244376_73245711_73245823_73246437_73246599_73247943_73248117_73250465_73250558_73252758_73252817_73253616_73253742_73254716_73254913_73255501_73255771_73257288_73257376_73257628_73257815_73258796_73259035_73262017_73262126_73265305_73265439_73265812_73265985_73267528_73267616_73269705_73269815_73270091_73270196_73272598_73272644_73275826_73275929_73277160_73277260_73279206_73279300_73279555_73279725_73282025_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293664_73293719_73305359_73305566_73352328_73352457_73378250_73378416_73413742
24992	chr15	-	3047	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	708	0	intron_retention	FALSE	non_canonical	0	0	junction_1	224.564516836971	4	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	NA	False	NA	NA	NA	79816009	79800007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79801383_79801704_79802678_79802953_79803129_79805572_79805640_79807672_79807739_79814786_79814831_79815662
24993	chr13	+	4943	11	Antisense	novelGene_ENSMUSG00000041747.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	99	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGCCGGAAACGCGGAGG	NA	False	NA	NA	False	NA	NA	NA	98384758	98399500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_98385885_98387079_98387138_98387291_98387427_98388436_98388538_98389251_98389403_98390153_98391565_98393610_98393734_98394342_98395800_98395882_98395973_98397305_98397478_98399381
24994	chr5	-	4441	17	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	0	-110	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	67.1548758002723	4	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTTGTGTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	21087043	20963770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987446_20994626_20994783_20999292_20999480_21006899_21007065_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
24995	chr19	+	2248	10	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-3	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	126.361132483328	22	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACTTGATGTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	60800019	60824671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263_60823318_60823411
24996	chrX	-	2849	4	NNC	ENSMUSG00000006423.16	novel	3340	7	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	90.336408311747	1	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTGTTTTGATCATTT	NA	False	NA	NA	False	NA	NA	NA	36127788	36112195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36114816_36116291_36116385_36116982_36117022_36127691
24997	chr3	+	2169	6	ISM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	1169	-3	-372	3	3prime_fragment	FALSE	canonical	3	438	junction_1	30.2549169557611	11	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTGGAGAAGTTACTAG	NA	False	NA	NA	False	NA	NA	NA	96466441	96469202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
24999	chr2	+	4112	19	NIC	ENSMUSG00000026991.21	novel	4484	21	NA	NA	13913	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	22.4694580088145	10	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCCTGGAGAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	59045030	59185538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59184546
25000	chr15	-	3465	14	NNC	ENSMUSG00000055065.8	novel	4732	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28.9743816655232	2	68	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	NA	False	NA	NA	NA	79430760	79411936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79413066_79414147_79414716_79415872_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
25001	chr4	+	1979	4	NNC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	275.740215903786	35	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGAGTTGCATTTCATA	8215	False	NA	NA	False	NA	NA	NA	101504914	101516559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_101505023_101509595_101509746_101513296_101513493_101515034
25002	chr1	+	3537	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	-2	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	13.7317151150175	126	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTGGAATTTTTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	44158157	44183925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_44158336_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
25003	chr5	+	1996	14	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	16	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	209.00813947515	6	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGATTGTAAACAATATGC	NA	False	NA	NA	False	NA	NA	NA	64250308	64285504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269467_64273735_64273777_64285119
25004	chr15	-	2119	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	4	-149	2	-9	multi-exon	FALSE	canonical	3	30	junction_2	34	564	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCAACATGTAATGCCTC	2270	False	NA	NA	False	NA	NA	NA	83135928	83110931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83112796_83114714_83114859_83135817
25005	chr9	+	1263	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-149	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6363.11267064909	27	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64080656	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082596_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
25006	chr11	+	1015	3	ISM	ENSMUSG00000057522.16	ENSMUST00000127713.2	458	4	88	2316	88	-2295	5prime_fragment	FALSE	canonical	3	285	junction_1	8	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACATGTAAGCCAGATTGA	NA	False	NA	NA	False	NA	NA	NA	95305156	95362845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_95305231_95361347_95361492_95362048
25008	chr11	+	2201	7	ISM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	60025	397	-196	-397	3prime_fragment	FALSE	canonical	3	238	junction_4	13.0607554656434	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTACTGTGTGGTATCTCT	NA	False	NA	NA	False	NA	NA	NA	95364948	95383835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
25009	chr4	+	2623	21	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	-2	-10	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.97994438695	647	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGAAAGAAGTGTCTAACT	3971	False	NA	NA	False	NA	NA	NA	155709334	155734385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155709399_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
25010	chr9	-	3988	15	FSM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	30	1589	30	8	multi-exon	FALSE	canonical	3	110	junction_11	15.624418356521	368	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGTGTCGTGTGTCACA	NA	False	NA	NA	False	NA	NA	NA	66500394	66423507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
25011	chr2	-	1946	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	404.200445323852	8	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	152185980	152179341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180608_152181634_152181928_152184956_152185009_152185116_152185248_152185776
25012	chr6	-	2551	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43544	-302	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCGTCTGTACAGCCTAGC	NA	False	NA	NA	False	NA	NA	NA	71852238	71808370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71828861_71829742_71829840_71833886_71834032_71837984_71838089_71839326_71839464_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849908_71851300
25013	chr9	+	2560	8	FSM	ENSMUSG00000034563.17	ENSMUST00000150826.9	2939	8	21	358	-6	-351	multi-exon	FALSE	canonical	3	171	junction_6	12.4638252063927	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAATCACAATTTAATTGA	NA	False	NA	NA	False	NA	NA	NA	72892880	72920862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211
25014	chrX	+	1488	10	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	66	-10	at_least_one_novel_splicesite	FALSE	canonical	1	29	junction_8	1492.04334164036	1	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGGAAGTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	105230834	105247295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243923_105246442_105246542_105246844
25015	chr2	-	3344	13	ISM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	8220	6	8176	-6	3prime_fragment	FALSE	canonical	3	168	junction_11	14.0185888495716	9	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGGGGATGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	150501958	150460030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755
25016	chr11	+	1799	13	NIC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	0	178	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	1442.04608446548	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCCATATTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	22940638	22953329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22953136
25017	chr9	+	2491	10	ISM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	72	29880	40	-29880	5prime_fragment	FALSE	canonical	3	295	junction_2	41.9046536795139	69	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTGAGTCTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	114230215	114273565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076
25018	chr2	+	2094	6	NNC	ENSMUSG00000006418.18	novel	2502	6	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	229.471915492942	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAACCAGTAAGCTGCAA	NA	False	NA	NA	False	NA	NA	NA	167345354	167358080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_167345522_167348966_167349118_167352795_167352903_167353180_167353247_167354436_167354545_167356585
25020	chr5	+	2653	3	Antisense	novelGene_ENSMUSG00000029246.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGAGGCAGAGGCAGGCA	NA	False	NA	NA	False	NA	NA	NA	77061932	77067092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_77063252_77063790_77063911_77065878
25022	chr18	+	2701	3	NNC	ENSMUSG00000063281.10	novel	3040	3	NA	NA	602	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	82.5	2	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTGTGATCTAAGAAA	1661	False	NA	NA	False	NA	NA	NA	24123290	24138417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24123448_24135706_24136363_24136529
25023	chr2	+	3719	14	NIC	ENSMUSG00000027255.15	novel	3068	16	NA	NA	-9	6	intron_retention	FALSE	canonical	3	197	junction_9	19.5375529770583	9	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCGTCCTGCCTCCCTGC	5843	False	NA	NA	False	NA	NA	NA	91095659	91107282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91105267_91105417_91105512_91105620_91105740_91106109
25025	chr11	-	3259	14	Antisense	novelGene_ENSMUSG00000020888.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCACCGAGGTCCCCGC	-7	True	NA	93	True	NA	NA	NA	69900919	69891426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_69891852_69895629_69895697_69895976_69896127_69896262_69896371_69896485_69896622_69896761_69896854_69896960_69897030_69897114_69897254_69897336_69897415_69898276_69898347_69898640_69898769_69898844_69898974_69899102_69899819_69899967
25026	chr11	-	3279	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	25	-1254	-5	1254	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	715	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTCTGTGTCATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	94212789	94180632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
25028	chr12	-	2680	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221374.2	1128	4	-79	-1473	0	-6	multi-exon	FALSE	canonical	3	53	junction_2	123.758725842755	240	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATATTTAAAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	54909662	54905607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_54908023_54908121_54908199_54908564_54908619_54909528
25029	chr10	+	2055	7	FSM	ENSMUSG00000006728.13	ENSMUST00000140254.8	2038	7	-30	13	-19	-13	multi-exon	FALSE	canonical	3	4641	junction_3	424.742274797318	190	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGTCTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	126899452	126903153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
25030	chr5	-	1843	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	-31	4	-31	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2919	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGGGCTGTTCTCTATC	NA	False	NA	NA	False	NA	NA	NA	134975819	134973976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134974000_134975800
25033	chr2	+	1445	1	Antisense	novelGene_ENSMUSG00000039483.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTGTTCCTGTAGGCT	2159	False	NA	NA	False	NA	NA	NA	30714506	30715951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_30714500_30716000
25034	chr8	-	3331	11	NNC	ENSMUSG00000036534.7	novel	3333	12	NA	NA	613	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	99.815279391484	244	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAACTGTGTCTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	96579537	96562553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572356_96572572_96572760_96572960_96575008_96575397_96579429
25036	chr18	-	2860	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	53	-2	3	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	14815832	14758685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
25037	chr6	+	1684	11	FSM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	-15	6	-15	-6	multi-exon	FALSE	canonical	3	1160	junction_1	83.5499850388975	3329	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCTGTAGGTTTTTATA	NA	False	NA	NA	False	NA	NA	NA	88442375	88474548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497_88468601_88473389_88473482_88474209
25038	chr8	-	1718	4	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	258	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	2008.98996181332	21	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43759715	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43759633
25039	chr8	-	3474	17	NNC	ENSMUSG00000052488.8	novel	3713	18	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	237.71671034027	1	127	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTAAAAGATTTCCTCTA	NA	False	NA	NA	False	NA	NA	NA	73228968	73214337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215200_73215279_73215466_73215592_73215680_73215823_73215947_73216295_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222327_73223703_73223860_73223933_73224072_73224714_73224894_73228455_73228630_73228901
25040	chr13	-	6314	26	FSM	ENSMUSG00000021709.15	ENSMUST00000091269.11	6224	26	-90	0	-90	0	multi-exon	FALSE	canonical	3	35	junction_5	14.0566852422611	93	47	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGAGTCTTGGTGTTGCCT	NA	False	NA	NA	False	NA	NA	NA	104056893	103955298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_103957315_103959318_103959394_103959821_103959915_103961227_103961435_103964414_103964532_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
25041	chr3	+	2353	19	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	525.501512372869	2	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	NA	False	NA	NA	NA	151916096	151938408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919666_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927045_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933805_151933883_151937513_151937660_151938031
25042	chr4	-	2761	23	NNC	ENSMUSG00000028559.18	novel	2408	23	NA	NA	-5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	119.893866632945	2	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	109059438	108918846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930085_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
25045	chr13	+	1406	1	Antisense	novelGene_ENSMUSG00000050377.9_AS_novelGene_ENSMUSG00000114547.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGTTGGATGCCATGTT	NA	False	NA	NA	False	NA	NA	NA	112730114	112731520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_112730100_112731500
25046	chr1	-	2987	11	NNC	ENSMUSG00000026277.15	novel	2821	11	NA	NA	9	-3	intron_retention	FALSE	non_canonical	0	0	junction_6	57.0802943229973	38	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGATGTACAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	93563435	93549626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553689_93553772_93554495_93554583_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
25047	chr5	-	3395	1	FSM	ENSMUSG00000001082.13	ENSMUST00000200717.2	414	1	-1540	-1441	19	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	91	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794385	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_34791000_34794400
25048	chr6	+	2866	22	NNC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	66.5020416374574	49	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACACCTGAAAATCATTCA	206	False	NA	NA	False	NA	NA	NA	49372570	49446427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_49372823_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
25049	chrX	+	3177	10	NNC	ENSMUSG00000000134.18	novel	3277	10	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	93.1241041053931	371	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGAGTCTCCCGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	7628905	7641439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639821
25050	chr16	-	2493	9	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	51	-151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	459.963704410468	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCGGCTCTGACTCTTGC	6317	False	NA	NA	False	NA	NA	NA	38370533	38345652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347182_38349806_38350031_38355086_38355181_38358264_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
25051	chr11	+	2952	4	Antisense	novelGene_ENSMUSG00000025140.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	69	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCACTTCATTTCAGCC	140	False	NA	NA	False	NA	NA	NA	120530228	120534587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120531174_120531966_120533791_120533986_120534111_120534528
25052	chr17	+	1251	1	Intergenic	novelGene_310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAATATATAAAGGTAA	NA	False	NA	NA	False	NA	NA	NA	87339005	87340256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_87339000_87340300
25053	chr7	-	4989	7	NIC	ENSMUSG00000030509.18	novel	4928	6	NA	NA	1	-27	intron_retention	FALSE	canonical	3	29	junction_2	17.1407571465077	69	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTTAAATCTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	66339343	66294339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_66297674_66309397_66310004_66327904_66327994_66328827_66329090_66331452_66331557_66338570_66338669_66338847
25054	chr6	-	3830	13	NNC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	1352	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_12	14.4366431924692	56	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	97287989	97263827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97287884
25055	chr7	-	1469	11	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-7	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	616.108180435871	33	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	33929695	33901581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33926557_33926663_33928352_33928422_33928707_33928799_33929516
25056	chr5	+	3637	18	NIC	ENSMUSG00000041638.19	novel	8555	58	NA	NA	-335	-30	intron_retention	FALSE	canonical	2	428	junction_11	65.6845770924961	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGTTTAATAAAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	115747561	115760677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115747664_115747749_115747947_115748080_115748224_115748866_115748985_115749082_115749299_115750646_115750812_115751414_115751876_115752134_115752279_115752389_115752660_115752919_115753034_115753427_115753659_115754409_115754604_115754692_115754808_115757355_115757453_115757710_115757860_115758202_115758311_115759559_115759779_115760083
25057	chr2	+	3424	12	FSM	ENSMUSG00000038696.15	ENSMUST00000147337.8	3111	12	-313	0	1	0	multi-exon	FALSE	canonical	3	190	junction_6	16.5988150527989	190	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTGTATATTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	34296881	34514961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34297267_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
25058	chr8	+	3949	5	FSM	ENSMUSG00000031505.12	ENSMUST00000178364.8	684	5	-21	-3244	4	78	multi-exon	FALSE	canonical	3	162	junction_1	55.3940430010304	2	105	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGCAGGACCTGATCTCC	NA	False	NA	NA	False	NA	NA	NA	11547571	11560314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706
25063	chrX	-	3035	11	NIC	ENSMUSG00000025151.17	novel	2884	12	NA	NA	-20	0	intron_retention	FALSE	canonical	3	1240	junction_8	165.938211392072	1	114	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGTGCTTCTCATC	NA	False	NA	NA	False	NA	NA	NA	93585629	93579081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
25064	chr3	+	2189	7	NIC	ENSMUSG00000068744.13	novel	1687	8	NA	NA	-3	-10	intron_retention	FALSE	canonical	3	155	junction_1	120.944431684785	8	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTCTGTATATCTGAA	7029	False	NA	NA	False	NA	NA	NA	108291151	108295485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294712_108294914
25065	chrX	+	1888	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	-31	0	-31	0	multi-exon	FALSE	canonical	3	454	junction_1	42	2710	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1637	False	NA	NA	False	NA	NA	NA	35861827	35869732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_35862268_35865773_35865930_35868440
25066	chr8	-	1719	8	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-36	-241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	457.102944686223	374	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85573495	85568719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569644_85570996_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
25067	chr2	-	1774	3	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGGGTTCGGAAGACAAA	5841	False	NA	NA	False	NA	NA	NA	162926603	162922637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162922742_162924468_162924618_162925082
25068	chr18	-	3050	21	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	115258	7	-22	-7	3prime_fragment	FALSE	canonical	3	125	junction_9	22.8133184784678	260	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTAGTGGTCTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	34024714	33929386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477
25069	chr1	-	1977	9	NIC	ENSMUSG00000006299.14	novel	1817	11	NA	NA	-2	-21	intron_retention	FALSE	canonical	3	1233	junction_6	28.4912267198168	397	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAATAAAATATACTTCCC	NA	False	NA	NA	False	NA	NA	NA	74323841	74319025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74319469_74319941_74320097_74320247_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
25071	chr2	+	3560	12	FSM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	29	6	3	-6	multi-exon	FALSE	canonical	1	2	junction_7	5.33195574495097	703	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGCGTGTCGGTGCTGTG	2726	False	NA	NA	False	NA	NA	NA	30023786	30042019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
25072	chr16	-	1431	13	NNC	ENSMUSG00000025613.14	novel	1567	14	NA	NA	22	113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1847.10151318221	1	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292725	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287561_87288198_87288220_87292701
25073	chr7	-	3095	23	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	0	intron_retention	FALSE	non_canonical	0	0	junction_17	57.3183260037117	12	40	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGATCCAGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	140697703	140681124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682974_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688702_140688757_140688853_140688886_140690280_140690426_140690543_140690670_140691067_140691143_140697626
25074	chr2	-	2480	15	NIC	ENSMUSG00000027634.15	novel	2586	16	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_14	44.442177521552	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5918	False	NA	NA	False	NA	NA	NA	156833972	156769264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156833918
25075	chr16	+	1892	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-5	-159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	839.977833040849	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGGAGTTGCTGGCT	1389	False	NA	NA	False	NA	NA	NA	20354263	20362647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
25076	chr19	+	2956	1	FSM	ENSMUSG00000065087.3	ENSMUST00000083153.3	126	1	-2379	-451	-2379	451	mono-exon	FALSE	NA	NA	NA	NA	NA	273	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	NA	False	NA	NA	False	NA	NA	NA	8700850	8703806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8700800_8703800
25077	chr16	+	3667	12	NIC	ENSMUSG00000022761.13	novel	2491	20	NA	NA	886	2	intron_retention	FALSE	canonical	2	99	junction_9	11.2338037684231	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCTGTCAGGAGCCATT	266	False	NA	NA	False	NA	NA	NA	17336815	17343855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
25078	chrX	+	2195	2	NIC	ENSMUSG00000008682.14	novel	648	7	NA	NA	0	-4	intron_retention	FALSE	canonical	3	9593	junction_1	0	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTTTTTGTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	73314462	73316737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73316441_73316520
25079	chr7	+	4298	28	NNC	ENSMUSG00000042055.14	novel	4550	29	NA	NA	14	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	46.1657715591198	1	120	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGACTTTGTTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	129193655	129237455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_129193788_129194699_129194812_129200748_129200903_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235454_129236543
25080	chrX	+	2931	10	NIC	ENSMUSG00000000134.18	novel	2943	10	NA	NA	-14	-8	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	87.2919042249043	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTTGGCATTGAGTC	NA	False	NA	NA	False	NA	NA	NA	7630167	7641428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7630238_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
25081	chr7	-	2418	16	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	15	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	685.874027954275	1	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCATCTGCCTCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	33867985	33840124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844009_33845629_33845787_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856778_33857399_33857472_33858242_33858365_33860979_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
25083	chr11	+	4256	21	FSM	ENSMUSG00000020536.13	ENSMUST00000108719.4	4268	21	-18	30	-18	-30	multi-exon	FALSE	canonical	3	223	junction_6	33.7192452465947	159	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAGCATTTAATATC	NA	False	NA	NA	False	NA	NA	NA	60590652	60604982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746
25084	chr19	-	2316	20	NNC	ENSMUSG00000024999.8	novel	3977	21	NA	NA	13	-2202	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	63.2826399637027	3	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCAATCCGCCTGTTGA	2301	False	NA	NA	False	NA	NA	NA	38807668	38778773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_38778817_38781144_38781243_38782548_38782642_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
25085	chr3	-	3953	7	Antisense	novelGene_ENSMUSG00000028175.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGGTGTCGGAAACAACT	NA	False	NA	NA	False	NA	NA	NA	159229582	159201092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_159201201_159203997_159204270_159219812_159219964_159221136_159221264_159221650_159221780_159222537_159222588_159226466
25086	chr9	+	491	2	NNC	ENSMUSG00000111423.2	novel	348	3	NA	NA	284	95548	intron_retention	FALSE	canonical	0	0	junction_1	0	1	35	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAAGCTTATCCACCACG	3622	False	NA	NA	False	NA	NA	NA	78179563	78275413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_78179660_78275018
25087	chr18	-	2876	21	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-29009	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	57.6883653781246	58	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGGTCTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	34054036	33929381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34053910
25088	chr17	+	2548	11	NNC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	10	-301	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	133.860225608655	82	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTAATCCTTTTCTTAAT	NA	False	NA	NA	False	NA	NA	NA	27136074	27151256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27136260_27139770_27139906_27139993_27140094_27140552_27140835_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
25089	chr10	+	2131	20	NNC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	141.133598128779	11	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	NA	False	NA	NA	NA	93289283	93320737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318383_93318496_93318823_93318929_93320524
25090	chr2	+	2772	3	NNC	ENSMUSG00000062175.14	novel	2900	3	NA	NA	299	-15	intron_retention	FALSE	canonical	3	30	junction_1	93.5	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTTTAAAGTCAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	156682318	156697475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156682438_156686075_156686302_156695048
25091	chr17	-	4190	4	FSM	ENSMUSG00000095253.5	ENSMUST00000202988.4	6012	4	22	1800	7	-1794	multi-exon	FALSE	canonical	3	24	junction_2	7.93025150224688	132	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAAAGACTAAGCACCG	NA	False	NA	NA	False	NA	NA	NA	33049213	33036222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33040074_33040751_33040813_33041047_33041175_33049062
25092	chr14	-	3475	29	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	21	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	118.528133231511	1	108	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTATAAGGAAGCAGCTGT	9766	False	NA	NA	False	NA	NA	NA	55873120	55863179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869759_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871881_55872588_55872669_55872815_55872907_55872986
25093	chr4	-	1807	12	NIC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	30	128	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	305.162062349697	3	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAACCATAGATAAAAGAG	2522	False	NA	NA	False	NA	NA	NA	129229133	129203181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
25096	chr3	+	1846	11	NIC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	1019.91249134423	212	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCTGGATGTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	79498682	79510955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_79498865_79500916_79501058_79502508_79502616_79503398_79503506_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
25098	chr15	-	1748	7	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	374	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	785.803074709066	1	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83056419	83037697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038861_83043052_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83050303_83050408_83056312
25099	chr14	-	1827	11	NNC	ENSMUSG00000000958.11	novel	638	6	NA	NA	-65	6139	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	70.9355341137289	3	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACAGGGGGTGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	54655302	54600759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54600966_54601165_54601216_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655205
25101	chr18	+	4248	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	-10	-3715	-10	-3	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	1	145	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAAGGTGTGCAATGATT	NA	False	NA	NA	False	NA	NA	NA	57506953	57526022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
25102	chr11	-	1865	6	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	551.797571578564	3	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8248	False	NA	NA	False	NA	NA	NA	102907939	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102906349_102906526_102907875
25103	chr11	+	3222	20	NNC	ENSMUSG00000025579.15	novel	3363	20	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	135.580643173442	3	85	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGTTCTCACGTCACC	NA	False	NA	NA	False	NA	NA	NA	119158851	119176275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175966
25105	chr18	+	3419	9	NNC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	611.34462457766	1	152	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	67908072	67928557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67908191_67912274_67912330_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
25106	chr13	+	3485	8	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-40	2305	intron_retention	FALSE	non_canonical	0	0	junction_7	53.2403100314498	45	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	66261253	66328219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66309197_66309325_66309508_66309570_66316575_66316704_66325249_66327509_66327618
25107	chr16	-	3041	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	420.291788523164	1	95	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAACATTTCTTGGTACC	8116	False	NA	NA	False	NA	NA	NA	4867721	4831789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832633_4832844_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847268_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
25108	chr7	-	2767	11	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	-25	556	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_10	265.033658239855	13	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCTGACATTTAAGTAC	NA	False	NA	NA	False	NA	NA	NA	132724369	132588735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724310
25109	chr5	-	3060	8	ISM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	29	2	-20	-1	intron_retention	FALSE	canonical	3	1095	junction_1	126.703736072358	8	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTAAGTCTTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	24650256	24646038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274
25110	chr19	-	2221	3	NNC	ENSMUSG00000024742.16	novel	2100	2	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	220	1250	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	1963	False	NA	NA	False	NA	NA	NA	10181499	10176501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10178462_10181167_10181388_10181458
25112	chr10	-	2218	11	ISM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	2249	-1	2184	1	3prime_fragment	FALSE	canonical	3	1884	junction_8	103.450906230927	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	9792	False	NA	-92	True	NA	NA	NA	128399554	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445
25115	chr2	-	3402	8	FSM	ENSMUSG00000035778.18	ENSMUST00000113002.9	3391	8	-18	7	-18	-3	multi-exon	FALSE	canonical	3	26	junction_7	27.2381784880513	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATATTCTGGTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	35351296	35290197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35351206
25117	chr11	+	1229	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	381	16	381	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	120654000	120655229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120654000_120655200
25118	chr11	+	2572	12	NNC	ENSMUSG00000059248.14	novel	3784	11	NA	NA	228	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	258.51147328152	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	924	False	NA	NA	False	NA	NA	NA	117157299	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117157422_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248_117252065_117253048
25119	chr1	-	3091	4	FSM	ENSMUSG00000001305.6	ENSMUST00000162336.2	3092	4	0	1	0	-1	multi-exon	FALSE	canonical	3	1054	junction_3	20.6774165590278	3	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAATCTCTGCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	186481522	186453289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186472061_186481360
25120	chr17	-	2661	8	NIC	ENSMUSG00000025728.17	novel	3233	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_4	100.888501802328	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	26160909	26145400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26153731_26153853_26153976_26154109_26155737_26156437_26160788
25121	chr7	+	4716	22	ISM	ENSMUSG00000023118.16	ENSMUST00000023882.14	4116	27	31	2873	-12	-9	5prime_fragment	FALSE	canonical	3	129	junction_5	14.4793229693516	94	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACACACTCACATGGCCA	NA	False	NA	NA	False	NA	NA	NA	18758332	18785669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862
25122	chr10	+	4671	6	ISM	ENSMUSG00000048701.14	ENSMUST00000147545.8	5511	9	69969	12	-7419	-12	3prime_fragment	TRUE	canonical	3	25	junction_2	2.72763633939717	223	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAATGTACTCCTGGA	8519	False	NA	NA	False	NA	NA	NA	70002919	70029018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_70002936_70004921_70005083_70010840_70010998_70017989_70018091_70023520_70023646_70024907
25123	chr7	+	3357	15	NNC	ENSMUSG00000030539.14	novel	3949	15	NA	NA	46	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	23.84730336015	6	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTATTTGTGGCCCACA	5758	False	NA	NA	False	NA	NA	NA	79848329	79876142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343_79875546_79875790
25126	chr2	+	1688	12	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	67	-723	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1220.76238203363	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGCCCCCTTTATACT	NA	False	NA	NA	False	NA	NA	NA	121244430	121268445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255048_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
25127	chr5	+	2208	14	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-32	-5	combination_of_known_splicesites	TRUE	canonical	3	52	junction_11	68.5178679240099	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9146	False	NA	NA	False	NA	NA	NA	110987812	111022006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
25128	chr2	+	1639	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	82	-712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1536.48492010895	2	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATACTGTCGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121244445	121268456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244497_121252929_121253009_121255005_121255124_121257075_121257160_121259949_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
25130	chr1	-	4498	18	NNC	ENSMUSG00000026274.12	novel	5779	18	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	53.3578375079933	97	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGGAGTGTTTAAGTTC	NA	False	NA	NA	False	NA	NA	NA	93270516	93237557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93237972_93238489_93238637_93240517_93240652_93242002_93242203_93244506_93244642_93244742_93244869_93247681_93247850_93248215_93248398_93248496_93249945_93251923_93252078_93253085_93253255_93254937_93255199_93258476_93258612_93259280_93259422_93262264_93262436_93263331_93263568_93265066_93265162_93270334
25131	chr5	-	2334	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	4	14	4	-14	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	4	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTTTATGTAATTCTGT	NA	False	NA	NA	False	NA	NA	NA	92583074	92563412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
25132	chr12	-	2414	26	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	13	-2357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	579.760571270589	3	79	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAATAAACTTGACAACT	NA	False	NA	NA	False	NA	NA	NA	13299151	13269330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277438_13279080_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287219_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
25133	chr14	-	466	1	Intergenic	novelGene_540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	34089489	34089023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_34089000_34089500
25134	chr17	+	2651	8	Antisense	novelGene_ENSMUSG00000024459.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	494	41	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCCACTTCGCAGCCATA	2742	False	NA	NA	False	NA	NA	NA	37278816	37299629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_37279194_37279356_37280207_37280327_37280612_37281211_37281462_37281732_37282004_37298305_37298416_37298546_37298823_37299396
25135	chr11	-	1816	5	Antisense	novelGene_ENSMUSG00000018583.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGGAGGAAGGTTCTTAC	7631	False	NA	NA	False	NA	NA	NA	55391692	55387014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_55387070_55388474_55388589_55388738_55388868_55389383_55389492_55390282
25136	chr2	+	1521	17	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	95	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	722.308925317796	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTGTCTCTGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	31360313	31410681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371064_31371140_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
25137	chr11	-	3343	10	FSM	ENSMUSG00000020472.15	ENSMUST00000101150.9	3771	10	420	8	-4	-8	multi-exon	FALSE	canonical	2	12	junction_6	45.5777723603659	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAAATAGTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	59397050	59376353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394502_59394637_59394973_59395081_59396653_59396789_59396989
25138	chr19	+	3091	22	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-21256	-619	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	139	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCGAGACCAACACGGAAG	NA	False	NA	NA	False	NA	NA	NA	5323967	5345437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5324558_5324821_5325001_5325084_5325192_5329296_5329401_5329499_5329641_5329869_5329983_5333675_5333781_5333887_5333975_5334601_5334755_5336218_5336440_5336597_5336673_5336834_5336977_5337096_5337193_5337256_5337312_5337562_5337657_5337941_5338030_5338327_5338444_5341338_5341450_5343106_5343364_5344340_5344405_5345068_5345114_5345289
25139	chr9	+	2896	8	NIC	ENSMUSG00000040188.11	novel	2340	9	NA	NA	0	-6	intron_retention	FALSE	canonical	3	243	junction_4	16.1927169317769	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGACAGCACTGGCCCTGAT	NA	False	NA	NA	False	NA	NA	NA	57468240	57496072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488933_57490134_57490237_57494362_57494484_57494704
25140	chr3	+	2888	11	NNC	ENSMUSG00000028180.19	novel	2737	11	NA	NA	12	-1	intron_retention	FALSE	non_canonical	0	0	junction_10	313.586734413304	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTATCAAGTGTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	157240036	157253972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157251787_157252311_157252541_157253288
25141	chr13	-	2663	14	NNC	ENSMUSG00000025450.5	novel	2659	2	NA	NA	-9348	11045	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	132	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCGGAAGTCCCGCCTC	NA	False	NA	NA	False	NA	NA	NA	119622645	119599294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119599654_119601098_119601226_119602545_119602839_119603400_119603490_119606048_119606696_119608700_119608772_119610363_119610491_119611366_119611457_119612468_119612547_119614223_119614391_119615963_119616057_119617468_119617566_119620987_119621030_119622262
25142	chr2	+	1049	7	FSM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	28	1532	4	90	multi-exon	FALSE	canonical	3	147	junction_2	25.1197133741609	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCCATCCCTGCATCG	NA	False	NA	NA	False	NA	NA	NA	119378205	119415976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
25144	chr5	+	1879	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1413.04528744658	1	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	705	False	NA	NA	False	NA	NA	NA	77099572	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110336_77112350_77112470_77114093_77114153_77114494
25145	chr8	+	2586	8	NIC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	-35	2	intron_retention	FALSE	canonical	3	2290	junction_6	81.2067153149596	5	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCTCCAGCCCCATC	NA	False	NA	NA	False	NA	NA	NA	84441861	84449906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84449188_84449277_84449423_84449515_84449664_84449753
25146	chr5	+	1303	4	ISM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	11413	133	78	-5	3prime_fragment	FALSE	canonical	3	832	junction_3	21.4527905462721	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAGCAACTGTCATTCAC	NA	False	NA	NA	False	NA	NA	NA	73461547	73471279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_73462028_73463920_73464097_73467616_73467770_73470785
25147	chr1	+	2967	20	NNC	ENSMUSG00000026083.13	novel	7797	24	NA	NA	-20167	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	162.108595317769	1	77	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTTCTACAGATTTTG	NA	False	NA	-16	True	NA	NA	NA	38060704	38091102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084819_38085666_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686
25148	chr11	+	1371	7	NIC	ENSMUSG00000038485.7	novel	506	3	NA	NA	-281	-5030	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	13.5973853695808	8	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGGAAGAAGCACACAAC	NA	False	NA	NA	False	NA	NA	NA	97267981	97284338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97268513_97268761_97268893_97269368_97269538_97273725_97273855_97279937_97280074_97280391_97280543_97284214
25149	chr9	+	3330	11	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	69	junction_1	183.938060226806	1	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTTATAGTTTGTATG	9118	False	NA	NA	False	NA	NA	NA	15217555	15228272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225329_15225526_15226428_15226678_15226737_15228184
25150	chr19	-	2323	20	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	690	junction_19	186.942819408855	2	59	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCTCTGCTTTGTCTGCC	5150	False	NA	NA	False	NA	NA	NA	53026981	52979615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
25151	chr11	-	2824	17	FSM	ENSMUSG00000020400.18	ENSMUST00000108886.8	2642	17	-184	2	-183	0	multi-exon	FALSE	canonical	3	13	junction_16	76.2520491527933	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTGTGACTGGCTAA	6657	False	NA	NA	False	NA	NA	NA	54853926	54801614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
25152	chr11	+	3095	5	Antisense	novelGene_ENSMUSG00000078622.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGTAGCTTCAGCCGTCC	4819	False	NA	NA	False	NA	NA	NA	106090183	106107134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106092183_106100741_106101287_106102496_106102606_106103905_106104190_106106976
25153	chr7	-	1990	7	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1099.63318378853	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCCTTTTGTCTCACTTT	NA	False	NA	NA	False	NA	NA	NA	117728799	117718128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117718414_117718487_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726362_117726491_117728691
25155	chr8	+	4001	4	NIC	ENSMUSG00000031818.13	novel	745	5	NA	NA	-21	-21	intron_retention	FALSE	canonical	3	8115	junction_1	527.642134616088	342	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGACCAGTTTACGTG	NA	False	NA	NA	False	NA	NA	NA	121395025	121400925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_121395095_121396047_121399632_121399959_121400092_121400709
25156	chr18	+	2005	6	NIC	ENSMUSG00000024317.16	novel	2422	8	NA	NA	40	55	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	166.126939416821	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTATATTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	21134437	21160497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_21134598_21135013_21135227_21150875_21150933_21153944_21154057_21157465_21157574_21159142
25158	chr7	+	737	1	NIC	ENSMUSG00000042606.10	novel	2766	7	NA	NA	224	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	16	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACACTCTCAGGCTCAG	4144	False	NA	NA	False	NA	NA	NA	126463811	126464548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126463800_126464500
25159	chr2	+	2007	4	NNC	ENSMUSG00000035772.12	novel	2080	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	283.389406216174	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACCTGGTGTCAGACT	NA	False	NA	NA	False	NA	NA	NA	28358077	28361174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_28358155_28358254_28358315_28358832_28358963_28359434
25160	chr7	+	701	7	NIC	ENSMUSG00000030672.13	novel	268	4	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	3	184	junction_1	671.232365793612	4648	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	3959	False	NA	NA	False	NA	NA	NA	126811778	126813460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
25161	chr2	+	1548	1	ISM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	1546	19	1522	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	17	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACCACCTGGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	28359623	28361171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28359600_28361200
25163	chr11	-	4488	4	FSM	ENSMUSG00000038615.18	ENSMUST00000107658.8	4219	4	-269	0	-269	0	multi-exon	FALSE	canonical	3	730	junction_3	297.772844071898	1	229	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96719050	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023
25164	chr18	+	2530	15	Antisense	novelGene_ENSMUSG00000003778.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	40	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTCCTAAAAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	34732885	34746147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34733295_34735259_34735303_34735726_34735832_34736761_34736937_34737649_34737722_34737885_34737977_34738526_34738741_34739471_34739520_34739727_34739821_34740090_34740547_34740829_34741111_34741473_34741679_34742855_34743005_34744189_34744316_34746084
25165	chr3	+	1862	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	922.449703572667	2	45	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCGTTGTCATGTGTTT	3868	False	NA	NA	False	NA	NA	NA	88204486	88229072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204567_88206653_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228787
25166	chr3	+	1458	9	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	13	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1129.95342824384	3	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCATTTGAGACCGTTGT	3827	False	NA	NA	False	NA	NA	NA	88204445	88229063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204476_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225838_88227766_88228013_88228320_88228453_88228750
25167	chr1	+	2083	19	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	253.104843352305	36	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCTCCTGCTTGCCGTTT	3046	False	NA	NA	False	NA	NA	NA	171910377	171949890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171949736
25168	chr5	-	2602	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	27	-2	6	0	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	318	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTTTCCACGCTGCAGT	7747	False	NA	NA	False	NA	NA	NA	140374990	140326055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
25169	chr6	-	2042	18	NNC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	171.847562610258	5	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGAAAACTTAAAGTATAT	NA	False	NA	NA	False	NA	NA	NA	97182521	97160971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166537_97166771_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
25171	chr1	-	4523	20	NNC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	59.435851963398	5	53	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTCAGCTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	36407104	36374810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392757_36392861_36392955_36393178_36393243_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406849
25172	chr10	+	2599	5	NIC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	0	-247	intron_retention	FALSE	canonical	3	1673	junction_3	18.6145104689863	1	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGTCCAGCTACCTGGA	2286	False	NA	NA	False	NA	NA	NA	79795985	79803198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79796207_79796835_79796947_79800759_79801958_79802039_79802304_79802393
25173	chr14	+	3895	4	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-1	281	intron_retention	FALSE	canonical	3	107	junction_1	10.4029910228848	20	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGAGTATGGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	21531500	21671750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958
25174	chr10	+	2476	12	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	-2	-6	intron_retention	FALSE	non_canonical	0	0	junction_3	702.249996690096	1	110	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCTCTGTCTTCCCTGA	1583	False	NA	NA	False	NA	NA	NA	79690460	79700187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694652_79694785_79695106_79695185_79695357_79695435_79695566_79695629_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698677_79699147
25175	chr11	-	2641	18	NNC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	90.7101166326864	1	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3633	False	NA	NA	False	NA	NA	NA	54846897	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811711_54814919_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830508_54831547_54831709_54846846
25177	chr6	-	2604	19	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	159.921238330423	9	17	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3508	False	NA	NA	False	NA	NA	NA	125168551	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148715_125158041_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
25180	chr5	-	1955	14	NIC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-2	-167	intron_retention	FALSE	canonical	3	589	junction_8	57.5579975061944	1416	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTTTTAGTGTGGTT	8876	False	NA	NA	False	NA	NA	NA	110801248	110796450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
25182	chr11	-	463	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	12	1046	12	-15	multi-exon	FALSE	canonical	3	5710	junction_1	0	289	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATGGACTTCCCTTTG	2959	False	NA	NA	False	NA	NA	NA	53321642	53319794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53319978_53321362
25183	chr11	-	4485	8	NNC	ENSMUSG00000020413.12	novel	4172	9	NA	NA	15	0	intron_retention	FALSE	canonical	0	0	junction_1	66.2499903735072	8	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTCATTTATTAAT	NA	False	NA	NA	False	NA	NA	NA	8961145	8943136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_8944971_8946783_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
25185	chr4	+	2240	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	-2	-719	-2	712	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	1048	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTCACCTGCTACACCA	3194	False	NA	NA	False	NA	NA	NA	129494490	129503033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
25186	chr9	-	3623	19	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	135	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCCACGCGGTTTTCG	8585	False	NA	NA	False	NA	NA	NA	21313088	21279303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299091_21299403_21299444_21299817_21300058_21300613_21300780_21303590_21303740_21305007_21305097_21305488_21305586_21306125_21306236_21306663_21306762_21307314_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21311747
25187	chr17	+	1711	7	NNC	ENSMUSG00000071172.14	novel	2110	3	NA	NA	272	-17	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	1002.65192808317	4	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGTTGTTTAACTTGA	NA	False	NA	NA	False	NA	NA	NA	29251934	29261067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29252011_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
25188	chr15	-	2811	7	NNC	ENSMUSG00000053411.17	novel	528	6	NA	NA	5	6	intron_retention	TRUE	non_canonical	0	0	junction_1	168.274577204441	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79855314	79800001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79801384_79801743_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
25189	chr1	-	2290	6	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	187	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	504.701495935964	1193	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTTCGCCCTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	119432337	119398037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119430561_119430753_119432306
25190	chr5	+	2106	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-144	0	intron_retention	FALSE	non_canonical	0	0	junction_4	1472.55610567985	1	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	612	False	NA	NA	False	NA	NA	NA	77099479	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109249_77109354_77110273_77110358_77112288_77112470_77114133_77114253_77114494
25191	chr2	-	3262	18	NNC	ENSMUSG00000026915.17	novel	3144	18	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	210.610350465459	339	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCTTTTGTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	37593879	37473170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493929_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593678
25193	chr15	+	2841	18	NNC	ENSMUSG00000087444.2	novel	2608	2	NA	NA	-34249	-4458	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	129	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGACCCAGTCAACCTCCT	4885	False	NA	NA	False	NA	NA	NA	100285778	100320898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100286360_100286506_100287043_100293150_100293204_100295543_100295699_100297294_100297369_100299148_100299298_100299431_100299552_100300177_100300264_100301059_100301221_100301688_100301845_100303456_100303524_100303623_100303695_100304159_100304266_100305979_100306102_100307080_100307207_100307963_100308113_100310071_100310146_100320843
25194	chrX	+	2018	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	306	0	-306	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	10	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTGTCACTGCAATTCT	NA	False	NA	NA	False	NA	NA	NA	12454039	12482982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
25195	chr1	+	3788	2	FSM	ENSMUSG00000079144.8	ENSMUST00000110831.4	2257	2	5	-1536	-1	4	multi-exon	FALSE	canonical	3	16	junction_1	0	68	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATATAAGCAGTTAATGT	966	False	NA	NA	False	NA	NA	NA	192855892	192860144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_192856089_192856552
25196	chr9	+	1258	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	280	0	116	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	78	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCCAAGAAACCAGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	64080656	64085668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
25197	chr11	-	5368	5	FSM	ENSMUSG00000044807.14	ENSMUST00000109135.9	5325	5	-42	-1	-8	1	multi-exon	FALSE	canonical	3	17	junction_4	5.87367006223537	52	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAAGTGGTGAATGTG	288	False	NA	NA	False	NA	NA	NA	50718559	50701911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718405
25198	chr2	+	3652	15	NIC	ENSMUSG00000027255.15	novel	3068	16	NA	NA	14	10	intron_retention	FALSE	canonical	3	197	junction_10	19.8341336373147	8	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGCCTCCCTGCCCAG	5835	False	NA	NA	False	NA	NA	NA	91095651	91107286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91105267_91105417_91105512_91105620_91105740_91106109
25199	chr6	-	1518	6	NNC	ENSMUSG00000030057.16	novel	2178	5	NA	NA	13	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5165.9476420111	5	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828028	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820224_87820359_87821139_87822103_87822306_87822446_87822540_87822637_87822776_87827885
25200	chr15	+	2846	23	NNC	ENSMUSG00000033065.15	novel	2879	23	NA	NA	86	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	22.3296119591885	223	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGGGCGCTCTTGTTA	1682	False	NA	NA	False	NA	NA	NA	98006432	98030326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98006542_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
25202	chr7	+	2063	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	158	-3	0	0	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	3784	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTGTGTTACCTTGG	NA	False	NA	NA	False	NA	NA	NA	131162108	131173624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
25203	chr14	-	2662	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	234	-1015	-102	1015	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	4	124	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTCTGTAGACCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	63746307	63728780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
25204	chr3	-	2002	8	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	-4	0	intron_retention	FALSE	canonical	3	357	junction_7	234.848887585187	192	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6096	False	NA	NA	False	NA	NA	NA	153618650	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
25205	chr2	+	2747	15	NNC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	19	1064	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	136.507699566055	21	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACACTTTGGTGTAATACT	NA	False	NA	NA	False	NA	NA	NA	69553167	69580956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69566624_69566664_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
25207	chr19	-	1860	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	26	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.574727405454	2	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3789	False	NA	NA	False	NA	NA	NA	7017309	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998138_6998354_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
25208	chr3	-	2706	21	NNC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	6	307	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_7	227.628666911705	21	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGATTTCTCTTTCCT	1866	False	NA	NA	False	NA	NA	NA	27207971	27175719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27188380_27188449_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
25209	chr14	+	2484	8	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-1	-1889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	189.533153634214	77	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52517072	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529384_52530863
25211	chr12	-	2576	18	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-13	2	intron_retention	FALSE	canonical	0	0	junction_7	61.9802960095029	508	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	84664157	84649304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84653075_84655339_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
25213	chr7	+	2978	24	Fusion	ENSMUSG00000030534.14_ENSMUSG00000047084.9	novel	420	6	NA	NA	78	-2	intron_retention	FALSE	canonical	0	0	junction_3	104.233288588174	5	45	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTTTGTTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	79911045	79941325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_79911172_79911568_79911680_79914125_79914221_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929782_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
25215	chr15	+	1490	4	NNC	ENSMUSG00000042406.9	novel	659	4	NA	NA	-26	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	608.34876692751	34	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATGTGGGTTTTCAGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140085_80140166_80140407_80140723_80140834
25216	chr19	+	2129	14	NNC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	322.171992729673	9	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATTTTTGTTGTGATTTT	32	False	NA	NA	False	NA	NA	NA	46064455	46072897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071366_46071640_46071803_46071958_46072066_46072189_46072283_46072450
25217	chr6	+	1803	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	546	92	8	-92	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	3	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5156	False	NA	NA	False	NA	NA	NA	85429041	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
25218	chr19	+	2531	7	NNC	ENSMUSG00000010663.6	novel	3301	11	NA	NA	2857	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	312.874531117862	1	107	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAGAATGTTGTTATTCA	NA	False	NA	NA	False	NA	NA	NA	10163774	10174233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10163844_10164118_10164248_10168803_10168835_10171359_10171457_10171681_10171762_10171852_10171979_10172234
25219	chr11	+	1765	1	NIC	ENSMUSG00000017837.13	novel	2097	4	NA	NA	2825	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAAGTTTCCCGTCCCC	NA	False	NA	NA	False	NA	NA	NA	100516661	100518426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100516700_100518400
25220	chr17	-	2763	11	NNC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	87	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	200.414695069997	1	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	NA	False	NA	NA	NA	50600540	50586424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_50588340_50590155_50590255_50591264_50591380_50592023_50592075_50593278_50593359_50594653_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
25221	chr1	+	1542	2	Genic_Genomic	ENSMUSG00000100701.2	novel	545	1	NA	NA	-59	1038	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAACTGTTTTGTATACTT	NA	False	NA	NA	False	NA	NA	NA	43927151	43928793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_43927386_43927485
25222	chr7	+	2114	9	ISM	ENSMUSG00000066306.14	ENSMUST00000163183.2	2934	13	8227	-4	7977	4	3prime_fragment	FALSE	canonical	3	336	junction_3	37.2894086839682	48	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTAAGCTCTTTGGGTCA	NA	False	NA	NA	False	NA	NA	NA	101658598	101664166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_101658720_101658823_101658982_101660039_101660287_101661087_101661317_101661948_101662086_101662375_101662553_101662736_101662854_101662944_101663149_101663442
25223	chr10	+	4375	25	NNC	ENSMUSG00000005682.10	novel	4445	26	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	74.4395611478795	1	143	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	NA	False	NA	NA	NA	128139188	128157222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151360_128151527_128151644_128151716_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
25224	chr6	-	2860	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-5	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	436.246386486149	2	96	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGCTGCCTCGTCATCT	9167	False	NA	NA	False	NA	NA	NA	88495815	88480589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88480785_88480981_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495360_88495415_88495667
25225	chr2	-	2232	17	NNC	ENSMUSG00000074627.12	novel	3460	25	NA	NA	-46509	-15171	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	50	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGACTTCCGCTCCGGG	NA	False	NA	NA	False	NA	NA	NA	157167978	157121211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157121251_157125503_157125696_157131445_157131542_157132455_157132633_157136072_157136132_157137168_157137307_157139299_157139478_157141475_157141578_157144323_157144430_157152118_157152212_157154395_157154502_157156689_157156892_157158041_157158126_157159862_157159960_157162036_157162114_157163654_157163791_157167628
25227	chr3	+	1904	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	73	0	1	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3877	False	NA	NA	False	NA	NA	NA	88204495	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
25228	chr7	+	2293	4	NNC	ENSMUSG00000030861.16	novel	6081	11	NA	NA	6426	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	58.6420402858639	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTCCCTTTTTATGAGA	2847	False	NA	NA	False	NA	NA	NA	131040155	131047941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_131040235_131042930_131043069_131045197_131045298_131045965
25229	chr8	-	2684	2	ISM	ENSMUSG00000031651.6	ENSMUST00000059692.4	1850	6	3408	1	962	-1	intron_retention	FALSE	canonical	3	244	junction_1	0	31	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	43591115	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43583726_43589312
25230	chr14	-	1566	2	Genic_Genomic	ENSMUSG00000057886.6	novel	552	1	NA	NA	-75	1089	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	74193066	74191350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_74192496_74192645
25231	chr2	-	1966	9	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	31	-430	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	477.574716013107	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGCCTAAAGAATTTTGG	NA	False	NA	NA	False	NA	NA	NA	154916336	154901659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902501_154904068_154904264_154905699_154905818_154906051_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
25233	chr7	+	1198	1	Intergenic	novelGene_2943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTACCCCTTCTAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	42903182	42904380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903200_42904400
25234	chr7	-	3861	9	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-20	-12	intron_retention	FALSE	canonical	3	1078	junction_4	58.3689772053614	8	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	NA	False	NA	NA	NA	16761754	16738576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16739097_16739185_16740164_16740256_16740298_16740831_16741172_16741650_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
25236	chr3	+	2125	5	NNC	ENSMUSG00000038374.11	novel	2608	6	NA	NA	0	-888	intron_retention	FALSE	canonical	0	0	junction_4	1767.10455265103	7	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATGCTATTGGCCCTTCT	8642	False	NA	-70	True	NA	NA	NA	96537255	96540219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96539844_96539980
25237	chr15	-	2949	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	95	0	95	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	1	114	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	38300855	38294656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
25239	chr11	-	1614	9	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCCTGGCTGAGCCATT	NA	False	NA	NA	False	NA	NA	NA	80286944	80279938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80279970_80280078_80280155_80280597_80280648_80282156_80282225_80282657_80282817_80283907_80284003_80285111_80285355_80285924_80286087_80286214
25240	chr3	+	1790	14	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	69	-5841	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	321.730307140226	6	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTGAGGAACTGTG	NA	False	NA	NA	False	NA	NA	NA	63883595	63924159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919029_63924089
25241	chr6	+	3281	25	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	0	-118	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	194.10885673737	1	143	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATACATCCGTTCTCAAA	4	True	NA	NA	False	NA	NA	NA	28480357	28888713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883264_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233_28888561_28888624
25242	chr5	-	637	1	ISM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	29586	1189	13552	382	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATTCTGTGAGCAGAGT	NA	False	NA	NA	False	NA	NA	NA	92201830	92201193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_92201200_92201800
25243	chr14	+	1498	7	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2841.17081206557	65	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACATTGGCAGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	63359964	63380579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373151_63376475_63376565_63379182_63379312_63379680
25244	chr8	-	3260	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	199	4	-15	-4	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	215	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACTTTTGTGT	5810	False	NA	NA	False	NA	NA	NA	25591802	25530859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
25245	chr2	-	3180	20	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-8	418	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_16	49.3423789466094	17	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCATGGAGTTGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	71178180	71104615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71159421_71159494_71160290_71160375_71163948_71164065_71174233_71174377_71178111
25246	chr11	-	3431	17	NNC	ENSMUSG00000005198.16	novel	5799	28	NA	NA	1	-557	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.6101787380367	3	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTCCAAGCTATTCCCCA	NA	False	NA	NA	False	NA	NA	NA	69649462	69625792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69626167_69633311_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
25247	chr9	-	1756	7	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1696.49855093759	3	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775173	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769157_110769279_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
25248	chr15	+	2005	20	NNC	ENSMUSG00000008690.16	novel	3302	20	NA	NA	0	17	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_17	317.364694051608	14	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	NA	False	NA	NA	NA	89239965	89255783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254803_89254879_89254955_89255012_89255118_89255197_89255296_89255447_89255513
25249	chr15	-	965	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	651	0	-651	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAGAGATCACCAATGCC	158	False	NA	NA	False	NA	NA	NA	98832319	98829956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
25250	chr4	-	2341	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	-25	5	-25	-5	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	499	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATCTTTTTCGTGACAC	NA	False	NA	NA	False	NA	NA	NA	129271934	129247425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
25253	chr7	+	2308	4	NIC	ENSMUSG00000006333.15	novel	1347	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	206	junction_3	5776.41413181415	9	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTATTGGTGTGCCTCT	1311	False	NA	NA	False	NA	NA	NA	3707038	3709893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3707448_3707644_3708919_3709006
25254	chr5	+	2162	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	333.257178375464	1	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815934	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825577_33826005_33826083_33826161_33826206_33826838_33826992_33828747_33828855_33829008_33829130_33829325
25255	chr16	+	2313	11	NNC	ENSMUSG00000022721.20	novel	2367	12	NA	NA	-9	1	intron_retention	FALSE	canonical	2	12	junction_4	79.3611995877078	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCTGTGGTGAACCAG	379	False	NA	NA	False	NA	NA	NA	18066856	18071363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068837_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070885_18070963
25256	chr11	-	1652	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3129.05267453266	2	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120238913	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238148_120238461_120238702_120238794
25257	chr3	+	2022	9	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1123.46678160727	2	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTTGACTTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	89987011	90008209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90008109_90008152
25258	chr5	+	2833	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	240	197	-67	-197	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	250	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAAAGTATTTGCTTGGT	NA	False	NA	NA	False	NA	NA	NA	44026134	44069520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
25260	chr2	-	2929	7	NNC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	-8	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.0047615808669	470	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAATAAAGCCTCATGTG	8319	False	NA	NA	False	NA	NA	NA	158203470	158195650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_158196555_158196663_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
25261	chr5	+	2481	9	Antisense	novelGene_ENSMUSG00000088712.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	74	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACACGGACGTCCCGCC	NA	False	NA	NA	False	NA	NA	NA	92201365	92231561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92202913_92203243_92203364_92204126_92204256_92205825_92205932_92212184_92212216_92216182_92216355_92218214_92218296_92221016_92221138_92231387
25262	chr2	+	2010	1	FSM	ENSMUSG00000039041.16	ENSMUST00000147383.2	4131	1	741	1380	741	-1231	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGGAGCAGTGGACCTC	NA	False	NA	NA	False	NA	NA	NA	179814687	179816697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_179814700_179816700
25264	chr5	+	1556	2	Antisense	novelGene_ENSMUSG00000066551.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTCTCCAGCCAGCGCG	NA	False	NA	NA	False	NA	NA	NA	148984295	148989847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148985716_148989711
25265	chr6	+	4804	27	FSM	ENSMUSG00000016487.16	ENSMUST00000016631.14	4851	27	38	9	16	-7	multi-exon	TRUE	canonical	1	79	junction_5	45.7139938177494	89	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTGCCTTGTGTATTT	7577	False	NA	NA	False	NA	NA	NA	146790022	146933514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_146790182_146840403_146840488_146878101_146878201_146879541_146879748_146892011_146892099_146893899_146894014_146894803_146894936_146897887_146897981_146899664_146899780_146902438_146902501_146903691_146903768_146907345_146907501_146911469_146911586_146912360_146912418_146913952_146914017_146917719_146917892_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
25266	chr17	-	4268	12	NIC	ENSMUSG00000023931.6	novel	2661	13	NA	NA	0	-4	intron_retention	FALSE	canonical	2	16	junction_3	7.09440473277333	95	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAAAATGTCCTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	53770334	53705920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
25267	chr5	+	2066	6	ISM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	71	1	34	-1	intron_retention	FALSE	canonical	3	593	junction_1	2145.51778365969	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGAGTCTGGTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	104583057	104588912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130
25269	chr9	+	2047	7	NNC	ENSMUSG00000032309.16	novel	2112	7	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	462.744229809754	17	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	NA	False	NA	NA	NA	55116241	55131717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128440_55130523
25270	chr1	+	2341	21	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	299.328732332865	1	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3060	False	NA	NA	False	NA	NA	NA	171910391	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171939535_171939595_171939690_171939838_171940592_171940783_171940900_171941027_171949686
25271	chr2	-	2271	15	FSM	ENSMUSG00000017754.14	ENSMUST00000109316.8	2226	15	-49	4	29	-4	multi-exon	FALSE	canonical	3	336	junction_14	23.0625812315366	322	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTTGGGTTTCTCTAGC	NA	False	NA	NA	False	NA	NA	NA	164699511	164681441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
25272	chr11	+	3824	19	Antisense	novelGene_ENSMUSG00000032782.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	152	71	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTCCCCGCACATCAC	NA	False	NA	NA	False	NA	NA	NA	69190361	69214681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69190817_69191068_69191142_69193677_69193795_69193921_69194094_69195086_69195144_69196309_69196456_69198768_69199027_69200172_69200342_69200808_69200927_69202157_69202301_69205541_69205683_69206014_69206252_69209770_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212760_69213518_69214115_69214608
25273	chr11	+	3477	18	NNC	ENSMUSG00000020454.18	novel	3614	19	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.0393428692448	3	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCTGGTACTGTGTTTA	3827	False	NA	NA	False	NA	NA	NA	3152645	3194586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3152718_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
25274	chr16	-	2107	10	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18021	6522	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGAAACAGGCTTGCGG	NA	False	NA	NA	False	NA	NA	NA	38411683	38383162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38383493_38384476_38384661_38393412_38393638_38396103_38396187_38402327_38402487_38405535_38405879_38405978_38406041_38406580_38406771_38408544_38408664_38411271
25275	chr4	-	1902	14	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	17	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	286.940997584302	84	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779636	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122753205_122753845_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
25277	chrX	-	3028	10	Fusion	ENSMUSG00000009406.14_ENSMUSG00000001134.10	novel	3548	6	NA	NA	-4	-761	multi-exon	FALSE	canonical	1	4	junction_5	264.516516789256	75	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGGTATTTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	20828217	20800394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
25278	chr16	-	2163	17	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	8752	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	296.975002893762	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCCCCGTGGCAGACG	8691	False	NA	NA	False	NA	NA	NA	3886887	3857847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886130_3886203_3886720
25280	chr8	+	1935	11	NNC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_8	1089.31982906766	4583	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGCTCCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	84441896	84449903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449196_84449277_84449423_84449515_84449664_84449753
25281	chr13	-	1478	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	78	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	20	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314259	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312152_34312304_34312515_34312854_34312966_34313228_34313338_34314159
25282	chr1	+	5812	17	NNC	ENSMUSG00000025969.16	novel	6342	17	NA	NA	175	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	6.11350963031874	51	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTTTTCCTACATTGTC	4183	False	NA	NA	False	NA	NA	NA	62742618	62857847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_62743437_62758088_62758267_62777447_62777630_62783333_62783565_62784516_62784673_62786316_62786487_62788291_62788448_62799933_62800079_62801849_62802200_62804008_62804154_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62854491_62856108_62856821
25283	chr5	+	3812	25	NNC	ENSMUSG00000029407.11	novel	3898	24	NA	NA	5	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	203.104379295201	1	105	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCACTTAATCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	92285810	92350647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314392_92314491_92314884_92314988_92315136_92315193_92318531_92318644_92321784_92321964_92325293_92325435_92328400_92328483_92329198_92329358_92329756_92329969_92335093_92335205_92335556_92335676_92335805_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715_92350538_92350583
25285	chr18	-	3117	4	NNC	ENSMUSG00000033184.15	novel	1348	3	NA	NA	6	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	280.643308608395	305	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAATTCAGCAAATTG	NA	False	NA	NA	False	NA	NA	NA	46730596	46719019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_46721756_46726315_46726562_46730157_46730255_46730558
25286	chr4	-	4001	8	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-10	-5	intron_retention	FALSE	canonical	3	14	junction_5	183.495759835346	1	128	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTAGAATCCTAATGAAG	NA	False	NA	NA	False	NA	NA	NA	126954927	126941390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126951193_126951387_126952585_126953453_126954788
25287	chr3	-	2056	4	NIC	ENSMUSG00000005625.16	novel	1626	8	NA	NA	-20	3	intron_retention	FALSE	canonical	3	876	junction_1	492.464099086308	15	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGCTTCAAATAGTGAT	NA	False	NA	NA	False	NA	NA	NA	94942598	94940011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94941076_94941219_94942093_94942252_94942322_94942548
25288	chr10	-	5496	5	FSM	ENSMUSG00000063804.9	ENSMUST00000079390.7	5402	5	-41	-53	-41	53	multi-exon	FALSE	canonical	3	19	junction_4	19.8368344248774	53	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCCTTTCAGAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	45346338	45252662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_45257528_45295232_45295305_45296619_45296805_45345132_45345315_45346146
25289	chr2	+	1957	3	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-15	-6	intron_retention	FALSE	canonical	3	4686	junction_2	130	42	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800813	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801584_26802030_26803070_26803176
25290	chr19	+	4058	7	Antisense	novelGene_ENSMUSG00000025007.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	66	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCCGCGTTAGACTGAA	NA	False	NA	NA	False	NA	NA	NA	40559505	40576848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40562814_40566021_40566126_40566214_40566364_40568301_40568523_40573934_40574052_40574572_40574633_40576749
25291	chr17	-	2080	16	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10126	-288	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	327.703293985411	1	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGCCATCGAAGTTGAGT	2342	False	NA	NA	False	NA	NA	NA	6744547	6708164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728104_6734313_6734422_6744415
25295	chr4	-	4465	13	FSM	ENSMUSG00000066043.14	ENSMUST00000084170.12	4483	13	25	-7	20	0	multi-exon	FALSE	canonical	3	61	junction_10	11.8591268181468	66	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATTTGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	132149732	132083233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132114202_132114377_132140380_132140435_132149655
25296	chrX	-	3974	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-47	-347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	166.956225932281	1	181	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAGTTAAGGCCAAGTGA	NA	False	NA	NA	False	NA	NA	NA	59224496	59101665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205658_59223941
25298	chr16	-	2725	9	NNC	ENSMUSG00000058240.15	novel	1154	10	NA	NA	6	-837	intron_retention	TRUE	canonical	0	0	junction_1	686.403261574419	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTATAATAATATACCAGTC	9186	False	NA	NA	False	NA	NA	NA	91525505	91489911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91490352_91490471_91492248_91496064_91496177_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
25299	chr6	-	1896	11	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	4	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.578359442822	14	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTTTCAGTGCTACTT	NA	False	NA	NA	False	NA	NA	NA	95695777	95451143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95451881_95474625_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
25301	chr16	-	3238	4	NIC	ENSMUSG00000063445.15	novel	1306	5	NA	NA	-13	4	intron_retention	FALSE	canonical	3	167	junction_3	9.79795897113271	58	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCCAAAAGAAAAGGCCTC	4827	False	NA	NA	False	NA	NA	NA	4536989	4529176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4531695_4532280_4532531_4534160_4534400_4536758
25302	chr3	+	2482	6	NIC	ENSMUSG00000005687.15	novel	1467	7	NA	NA	0	-8	intron_retention	FALSE	canonical	3	3786	junction_4	89.7850767109991	63	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTAAAAAAAAAAAG	5023	False	NA	NA	False	NA	NA	NA	103079064	103086460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103082986_103084654_103084736_103085670
25303	chr11	-	1975	11	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	-34	-27	intron_retention	FALSE	canonical	2	960	junction_1	156.271558512738	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATTAAACGTGGACATTT	NA	False	NA	NA	False	NA	NA	NA	119190878	119179216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186960_119188630_119188704_119190653
25304	chrX	+	3569	25	NNC	ENSMUSG00000031390.9	novel	2787	3	NA	NA	2418	26333	intron_retention	TRUE	non_canonical	0	0	junction_1	0	21	34	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTAGAAGCAGGGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	72938137	72965441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72938569_72939552_72939652_72939997_72940092_72940418_72940604_72940686_72940756_72940829_72941069_72941158_72941267_72941361_72941497_72941576_72941655_72941738_72941799_72943146_72943275_72943700_72944075_72944239_72944345_72947855_72948076_72948185_72948315_72949256_72949470_72950034_72950200_72950275_72950483_72961448_72961533_72963106_72963153_72963359_72963479_72963571_72963614_72964587_72964651_72964880_72964977_72965361
25305	chr13	-	2416	14	NIC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	6	11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	49.8302443746553	53	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAATAGATGGAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	55248061	55176096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55176532_55177228_55177272_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
25306	chr11	+	2013	9	NIC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	19	-144	intron_retention	FALSE	canonical	3	1103	junction_5	72.4740255194922	3	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTGCAGAAACACTAGG	NA	False	NA	NA	False	NA	NA	NA	4823969	4844056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4824104_4833367_4833496_4833725_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
25307	chr9	-	2818	5	ISM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	57889	3	57889	-3	intron_retention	FALSE	canonical	3	727	junction_2	47.1241710802429	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTGGATTTCTGATACC	NA	False	NA	NA	False	NA	NA	NA	115081600	115071651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_115073114_115075112_115075326_115077572_115077687_115079846_115080021_115080745
25308	chr6	-	5558	9	FSM	ENSMUSG00000002222.15	ENSMUST00000002292.15	6165	9	595	12	595	-12	multi-exon	FALSE	canonical	3	172	junction_4	25.5828922328966	165	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAACTGTTTTTGTGGA	NA	False	NA	NA	False	NA	NA	NA	71417026	71365629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110_71376278_71390233_71390335_71391768_71391904_71406001_71406145_71416981
25309	chr14	-	2541	6	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-7	1207	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	163.376375281128	1	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	NA	False	NA	NA	NA	21102270	21084874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21086772_21087180_21087326_21088045_21088254_21090119_21090206_21091020_21091159_21102203
25310	chr18	-	2358	14	NIC	ENSMUSG00000024454.17	novel	2032	15	NA	NA	3	-6	intron_retention	FALSE	canonical	3	500	junction_2	40.7767772406081	761	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTACTTTATTAGTTAG	NA	False	NA	NA	False	NA	NA	NA	38088024	38070030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
25311	chr5	+	2873	7	NNC	ENSMUSG00000029622.17	novel	1394	10	NA	NA	-2021	-4	intron_retention	FALSE	canonical	0	0	junction_5	703.176522803643	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	145058467	145064879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145058550_145059341_145059447_145060378_145061505_145062387_145062777_145063536_145063984_145064061_145064537_145064630
25312	chr3	+	2875	14	NIC	ENSMUSG00000027775.10	novel	3011	16	NA	NA	24	-1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	232.976673032977	5	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTGGAGGATAAATGACTG	NA	False	NA	NA	False	NA	NA	NA	67490097	67511569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_67490311_67491976_67492030_67492930_67493044_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
25313	chrX	-	2785	10	Antisense	novelGene_ENSMUSG00000019087.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.314269680527355	3	65	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCACTGCAGATCAGAT	NA	False	NA	NA	False	NA	NA	NA	73348295	73340752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73340927_73341227_73341586_73343385_73343925_73344177_73344376_73344927_73344970_73345540_73345620_73345981_73346207_73346827_73346873_73346960_73347191_73347400
25314	chr7	-	3272	10	NIC	ENSMUSG00000030846.16	novel	4266	11	NA	NA	84	-2	intron_retention	FALSE	canonical	3	163	junction_5	26.5078604694281	22	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGACTATAAATTTTG	NA	False	NA	NA	False	NA	NA	NA	128063292	128044005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
25315	chr3	+	3689	17	NIC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	19	-564	intron_retention	FALSE	canonical	3	259	junction_9	26.7218748172728	9	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGCCATGTCTCCCTACC	NA	False	NA	NA	False	NA	NA	NA	88243585	88266380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333
25316	chr13	+	2540	12	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	69.776028941722	338	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	84370426	84443989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
25317	chr14	+	2309	9	NNC	ENSMUSG00000040618.8	novel	2417	9	NA	NA	-29	0	intron_retention	FALSE	non_canonical	0	0	junction_6	751.695541758763	1	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	8985	False	NA	NA	False	NA	NA	NA	55777816	55786329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782051_55782341_55782491_55782677_55782883_55785153_55785288_55785496
25318	chr17	+	2671	8	Antisense	novelGene_ENSMUSG00000023940.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTCTGCGTTACGCGTA	NA	False	NA	NA	False	NA	NA	NA	53982855	53996313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_53983742_53983934_53984122_53985934_53986730_53988472_53988516_53990580_53990661_53994113_53994309_53994738_53995149_53996238
25319	chr11	+	1680	11	Antisense	novelGene_ENSMUSG00000119662.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCGGAGTGCCCGCCTAT	NA	False	NA	NA	False	NA	NA	NA	69557762	69563141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69558444_69558520_69558600_69558846_69558940_69559022_69559155_69559227_69559373_69559467_69559579_69559902_69560005_69560980_69561097_69561438_69561574_69561753_69561803_69563104
25321	chr2	-	2388	18	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	47	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	116.8572606951	1	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCCTGCAGTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	103591493	103551602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562592_103573608_103573703_103574630_103574765_103578323_103578391_103588042_103588139_103591393
25322	chr10	-	2633	20	NNC	ENSMUSG00000040354.15	novel	2939	21	NA	NA	1175	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	666.883905971888	2	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	127146372	127132094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135329_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144367_127144549_127144776_127144853_127145872_127146008_127146088_127146164_127146312
25324	chr16	-	2192	19	ISM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	3877	132	-3753	-131	3prime_fragment	FALSE	canonical	3	214	junction_1	130.048388430358	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGGAAAAAAAATCTCATTT	NA	False	NA	NA	False	NA	NA	NA	16925244	16904550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042
25325	chr9	-	5072	18	ISM	ENSMUSG00000034218.17	ENSMUST00000118282.9	9819	62	74147	-2001	-6202	2001	3prime_fragment	TRUE	canonical	0	0	junction_13	14.9539084243093	38	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTGTGGAAGTATATGCT	NA	False	NA	NA	False	NA	NA	NA	53371119	53348447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_53351230_53351330_53351468_53352973_53353038_53353706_53353822_53355291_53355379_53356644_53356811_53359352_53359503_53361817_53361935_53362848_53362990_53364652_53364736_53364831_53364971_53365588_53365748_53366015_53366130_53367067_53367276_53367793_53368009_53368677_53368792_53370102_53370277_53371012
25328	chr4	-	2725	6	NNC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	-7	intron_retention	FALSE	canonical	0	0	junction_2	444.576832504799	1	98	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATATGTGTCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148711222	148701326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148703249_148703640_148703802_148705048_148705190_148706405_148706570_148709581_148709834_148711137
25330	chr2	+	1640	12	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	67	-707	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1221.56333922377	59	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	121244430	121268461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257106_121262172_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
25331	chr8	-	2361	2	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	10086	-821	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTGGTGCTGGCATCC	NA	False	NA	NA	False	NA	NA	NA	26474075	26471452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26473673_26473934
25332	chr10	-	2372	14	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-51	-12	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	97.618263884311	1	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTTTTTATTCTGTGT	8055	False	NA	NA	False	NA	NA	NA	62487048	62451805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
25333	chr13	-	3234	10	NIC	ENSMUSG00000034928.17	novel	3772	11	NA	NA	-23	-842	intron_retention	FALSE	canonical	3	111	junction_9	188.600760638923	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAGTCTTACTGTATATA	NA	False	NA	NA	False	NA	NA	NA	54835930	54828068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831576_54831773_54831900_54832150_54832302_54835843
25334	chr7	+	2189	6	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	20770	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	434.946617414137	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	109650042	109655816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109650083_109650219_109650441_109650528_109650735_109651917_109652099_109654225_109654561_109654610
25335	chr12	-	2954	10	NNC	ENSMUSG00000020986.14	novel	2529	18	NA	NA	-6673	-356	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	278.041075214028	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGTGCTTTTTTTGTTT	9961	False	NA	NA	False	NA	NA	NA	59036163	59005524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59033478_59035980
25336	chr3	+	4259	11	NIC	ENSMUSG00000028175.16	novel	3323	12	NA	NA	39	-59	intron_retention	FALSE	canonical	3	37	junction_10	12.6079340099796	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAGAAGAAAACACGT	NA	False	NA	NA	False	NA	NA	NA	159201133	159235037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234635
25337	chr14	+	3014	11	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_7	491.412952617246	1	111	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGGCAGTTGGAAGAAT	9014	False	NA	NA	False	NA	NA	NA	55777845	55787279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782760_55782827_55782883_55785153_55785292_55785496_55785593_55785761
25338	chr1	-	3622	12	NNC	ENSMUSG00000040225.16	novel	593	2	NA	NA	-7	2402	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.2694234084327	1	34	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCAAATCCCAGCCTTCT	NA	False	NA	NA	False	NA	NA	NA	162532342	162508904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_162509789_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937
25339	chr9	+	1704	12	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-28	-10	intron_retention	FALSE	canonical	3	5755	junction_3	178.167068035121	5	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTATTGAGAACTGTGT	NA	False	NA	NA	False	NA	NA	NA	108765753	108778677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
25340	chr15	-	2465	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	0	-10	intron_retention	FALSE	canonical	3	334	junction_10	41.799641146785	77	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCAATCAAACCCAACT	8666	False	NA	NA	False	NA	NA	NA	76501048	76496600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
25342	chr11	-	3163	12	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	-6	-48	intron_retention	FALSE	canonical	3	937	junction_7	73.3416098510061	5	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGTGGGAAAAGATTGCT	4509	False	NA	NA	False	NA	NA	NA	6217752	6208966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
25343	chr9	+	1718	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	-34	719	-4	-3	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	59	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAATGAATGATGTAAT	NA	False	NA	NA	False	NA	NA	NA	54493760	54511226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
25345	chr9	+	3636	5	NIC	ENSMUSG00000032599.13	novel	1708	6	NA	NA	-10	1	intron_retention	FALSE	canonical	3	21	junction_3	39.6736688497547	169	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGCTGCTGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	108661010	108683532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108661070_108673262_108675693_108676440_108676617_108681740_108681917_108682737
25346	chr14	+	3551	23	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	3	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	159.091097402486	1	134	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGAGAAAGCCCTGCT	NA	False	NA	NA	False	NA	NA	NA	32043978	32070094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044036_32047793_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055809_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
25347	chr18	+	4688	16	NIC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	19	4	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	19.7033556081755	53	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTTAGTGTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	74401264	74414309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
25348	chr4	+	3357	12	NIC	ENSMUSG00000028542.18	novel	3479	14	NA	NA	-5	0	intron_retention	FALSE	canonical	1	3	junction_3	29.6528119442043	11	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGATGTGCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	117692524	117726502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_117692675_117700215_117700333_117713071_117713146_117713886_117714019_117714399_117714671_117720625_117721021_117721109_117721214_117721601_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
25349	chr1	-	1856	3	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGACCCTCCCCCCTCCC	2449	False	NA	NA	False	NA	NA	NA	87648213	87642945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87643034_87645409_87646005_87647040
25351	chr5	-	3451	5	Antisense	novelGene_ENSMUSG00000032840.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	234	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCGGCCACGTGATCCGC	NA	False	NA	NA	False	NA	NA	NA	118401995	118383326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_118383520_118393730_118393891_118397039_118397191_118397437_118397552_118399162
25352	chr3	-	5004	7	FSM	ENSMUSG00000042997.14	ENSMUST00000056749.14	5047	7	41	2	6	-2	multi-exon	FALSE	canonical	3	23	junction_4	5.77350269189626	66	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATTGGCTTTATTCAT	NA	False	NA	NA	False	NA	NA	NA	53370712	53356005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_53360071_53360962_53361076_53363846_53363939_53365905_53366107_53369052_53369201_53369732_53369886_53370480
25353	chr11	-	2341	12	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	-7	21	intron_retention	FALSE	canonical	3	1008	junction_7	76.395339739308	9	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCACCACGCTGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	96807225	96798620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
25354	chr12	+	4123	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	6	-2239	6	-222	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	167	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTTAACTTCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	21366420	21373598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
25355	chr16	-	2001	11	NIC	ENSMUSG00000022962.16	novel	1865	11	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	68	junction_10	565.765154458986	1054	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGTGTTTTGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	91443806	91430296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443614
25357	chr2	-	4697	16	NIC	ENSMUSG00000075415.14	novel	4726	17	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	84	junction_7	27.5474540061731	101	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCTGGTTCTCTGTTGTA	4780	False	NA	NA	False	NA	NA	NA	31032008	30916220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30918896_30923041_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
25358	chr4	-	1665	5	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	5	282	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.1150734156725	2	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGTTTGTCTAAGTGTA	NA	False	NA	NA	False	NA	NA	NA	116413127	116408547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116409423_116409875_116410151_116410605_116410927_116411964_116412101_116413069
25359	chr4	-	6642	14	FSM	ENSMUSG00000028382.16	ENSMUST00000030076.12	6855	14	44	169	-6	11	multi-exon	FALSE	canonical	3	119	junction_2	23.0463900573291	259	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTAGTGCATGGTTAAT	-1	True	NA	NA	False	NA	NA	NA	59549320	59472036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524394_59524477_59549147
25360	chr5	+	2843	17	NNC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	75.0533143838432	8	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCTATTATTTAAACCAT	7985	False	NA	NA	False	NA	NA	NA	3853183	3891356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882143_3886777_3886895_3890873
25362	chr9	+	953	1	ISM	ENSMUSG00000034593.17	ENSMUST00000123128.8	11702	41	151539	9	28954	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	17	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAAACGTTGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	75130008	75130961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_75130000_75131000
25363	chr16	-	2806	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	42	0	-6	0	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	523	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	NA	False	NA	NA	NA	45563276	45550087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
25364	chr14	+	2232	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	-2	0	-2	0	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	742	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTGATATCTGAATTC	NA	False	NA	NA	False	NA	NA	NA	66074748	66104056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
25366	chr11	+	2610	10	NIC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	1	-17	intron_retention	FALSE	canonical	3	1019	junction_3	105.70188687478	74	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGTTCTCCAGAGCTC	NA	False	NA	NA	False	NA	NA	NA	98573391	98586788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581846_98584208_98584324_98584404_98584525_98584630_98585120_98586188_98586240_98586348
25367	chr11	-	1729	11	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	0	intron_retention	FALSE	canonical	2	960	junction_1	157.534885025508	44	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190844	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
25368	chr4	+	2822	15	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_8	86.1439232343413	3	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTCTTGTGTGTATCCTT	-17	True	NA	NA	False	NA	NA	NA	11558929	11615803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604953_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
25370	chr5	+	3280	5	FSM	ENSMUSG00000036898.17	ENSMUST00000085856.12	5312	5	1	2031	1	-2031	multi-exon	FALSE	canonical	3	42	junction_4	9.52299847737046	218	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGAATGACGGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	138439730	138456925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454136
25371	chr17	+	1604	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-5	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	705.255620325	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460775	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472008_35472162_35472331_35472448
25372	chr3	+	1591	13	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	706.913650824641	14	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3844	False	NA	NA	False	NA	NA	NA	88204462	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220880_88227866_88228013_88228320_88228453_88228750
25373	chr6	+	4585	4	FSM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	20	0	-13	0	multi-exon	FALSE	canonical	3	33	junction_1	6.54896090146283	60	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGCCAAAAGTTGTG	8346	False	NA	NA	False	NA	NA	NA	72324336	72330131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72324499_72324575_72324695_72325511_72325664_72325979
25374	chr17	-	1856	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3198	7422	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGGAAAGCGGTAGGGAT	NA	False	NA	NA	False	NA	NA	NA	13143371	13135277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136928_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142104_13142298_13142415_13142580_13143145
25375	chr15	+	2334	7	FSM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	35	-4	-17	4	multi-exon	FALSE	canonical	3	255	junction_1	32.1334024895521	597	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	NA	False	NA	NA	NA	100125734	100159129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
25376	chr4	+	1875	10	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	10991	373	3517	-373	3prime_fragment	FALSE	canonical	3	1466	junction_6	55.8425918249538	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGCACGGAGTCTCG	NA	False	NA	NA	False	NA	NA	NA	129094543	129113027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
25378	chr9	+	1795	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	720.847667680211	2	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183601	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192553_108204878_108204954_108208085_108208191_108212249_108212381_108213846
25379	chr1	+	2958	5	ISM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	135320	1202	-3157	-1105	3prime_fragment	FALSE	canonical	3	59	junction_1	77.8985718739439	258	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGCAGTGATCCCATCAT	NA	False	NA	NA	False	NA	NA	NA	152966068	152993805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313
25380	chr7	+	2918	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	44	-479	3	479	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	596	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGACATGCTAAGCAGTTG	NA	False	NA	NA	False	NA	NA	NA	83281210	83292015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
25381	chr8	+	2547	7	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	177	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	123.599712333358	351	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	47070653	47092724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47070814_47082768_47082837_47085351_47085477_47087232_47087359_47088411_47088588_47089236_47089358_47090953
25382	chr17	-	2164	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	34	-398	34	-7	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTACATTGCTTCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	13179224	13161931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
25383	chr19	-	1912	12	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-59	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	981.261643611499	2	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGCTACGGTCTCCAGT	3704	False	NA	NA	False	NA	NA	NA	7017394	6998075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999650_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
25384	chr16	-	1953	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	-8	0	-8	0	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	524	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	946	False	NA	NA	False	NA	NA	NA	11021203	11010833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
25385	chr10	-	2328	12	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_10	90.106273343579	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	100	False	NA	NA	False	NA	NA	NA	41685893	41594836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685568_41685660_41685783
25386	chr4	+	3944	9	FSM	ENSMUSG00000034926.4	ENSMUST00000047973.4	4028	9	73	11	73	-11	multi-exon	FALSE	canonical	3	318	junction_6	36.7353287041235	326	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACGCTAGTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	106418307	106446299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_106418595_106421597_106421754_106428608_106428715_106429421_106429541_106430924_106431189_106435386_106435531_106442986_106443185_106443541_106443721_106443808
25387	chrX	+	3857	14	ISM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	75641	3618	-13702	-188	3prime_fragment	FALSE	canonical	3	952	junction_3	85.6664786373887	2	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCAAAGGTGTATATAGT	NA	False	NA	NA	False	NA	NA	NA	13013393	13035949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
25388	chr11	+	4271	12	FSM	ENSMUSG00000020366.19	ENSMUST00000020634.14	4675	12	163	241	23	-231	multi-exon	FALSE	canonical	3	274	junction_7	40.7615521322656	137	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGAATAGATGTTGAAGT	NA	False	NA	NA	False	NA	NA	NA	49737742	49777007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
25389	chr7	-	3500	21	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-15	-43	intron_retention	FALSE	non_canonical	0	0	junction_3	56.7944539545896	1	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGCAAAACTTTTTACAAG	NA	False	NA	NA	False	NA	NA	NA	140697701	140681180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682269_140682337_140682440_140682999_140683148_140683904_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140689583_140689685_140690288_140690426_140690543_140690670_140691067_140691143_140697626
25390	chr13	-	3251	6	FSM	ENSMUSG00000021418.16	ENSMUST00000174852.2	3269	6	-17	35	-1	-32	multi-exon	FALSE	canonical	3	532	junction_3	23.0338880782207	15	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATGACTGCCCACCATAA	NA	False	NA	NA	False	NA	NA	NA	36090328	36080729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36087740_36088401_36088547_36090186
25391	chr3	-	2949	18	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	12648	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	310.086794412797	1	105	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAAAGCCTCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	104712022	104702155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704461_104704600_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793
25392	chr4	-	2157	1	Genic_Genomic	ENSMUSG00000006699.18	novel	NA	NA	NA	NA	36436	589	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCATATTGTTAGAACTAA	218	False	NA	NA	False	NA	NA	NA	137048574	137046417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_137046400_137048600
25393	chr16	+	2772	15	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	14	94	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	39.1635112348842	7	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGATACTTTTTTTTTCTA	6415	False	NA	NA	False	NA	NA	NA	44167790	44207600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_44167870_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
25394	chr14	+	2121	10	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	674.18477519973	2	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTCCCTGTGTCTGCAT	9026	False	NA	NA	False	NA	NA	NA	55777857	55786389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782051_55782341_55782435_55782663_55782883_55785153_55785292_55785496_55785593_55785761
25396	chr6	+	2127	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	36	0	36	0	multi-exon	TRUE	canonical	3	600	junction_1	54.2445309298778	1683	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	113023221	113045234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
25397	chr15	-	1771	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	390	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	7	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGACCCTGCCAGCGTTTC	NA	False	NA	NA	False	NA	NA	NA	83056403	83037700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83037862_83038116_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
25398	chr3	-	3118	9	ISM	ENSMUSG00000037174.19	ENSMUST00000062009.14	3353	10	14611	2	-4	-2	3prime_fragment	FALSE	canonical	3	56	junction_7	79.164287244944	6	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTTGTGGTTTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	51233454	51162653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51215470_51215637_51230642_51230873_51233368
25400	chr2	+	2613	14	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-18	-10	intron_retention	FALSE	canonical	3	502	junction_11	52.4353645512387	826	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGAAGCCAGATATTTTA	NA	False	NA	NA	False	NA	NA	NA	174257625	174269285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
25401	chr9	+	1975	7	NNC	ENSMUSG00000032309.16	novel	2112	7	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	474.826781281577	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	NA	False	NA	NA	NA	55116241	55131717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125702_55125764_55128305_55128472_55130523
25402	chr13	-	3237	8	NIC	ENSMUSG00000094870.9	novel	2966	8	NA	NA	-228	1	combination_of_known_junctions	FALSE	canonical	3	13	junction_7	54.2684182972914	231	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120252653	120226721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252355
25403	chr7	+	2089	3	NNC	ENSMUSG00000038503.16	novel	815	2	NA	NA	-1781	1135	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	655.5	3	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTCCTCCAGTTGGT	NA	False	NA	NA	False	NA	NA	NA	83531892	83548423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83532283_83544737_83544971_83546957
25404	chr18	-	4417	8	ISM	ENSMUSG00000024293.17	ENSMUST00000025142.13	4545	11	14620	3863	14331	-3740	internal_fragment	FALSE	canonical	3	113	junction_2	14.9543523116591	3	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAGTCTAAAACATTTTT	NA	False	NA	NA	False	NA	NA	NA	10595732	10570369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745
25405	chr6	-	1590	6	NNC	ENSMUSG00000030057.16	novel	2178	5	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5531.81107414199	4	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828030	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822172_87822239_87822306_87822446_87822542_87822637_87822776_87827885
25407	chrX	+	2366	16	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-21	-4	combination_of_known_junctions	FALSE	non_canonical	1	66	junction_12	96.2243674382372	345	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCTTTGCTTGTTTAT	1102	False	NA	NA	False	NA	NA	NA	20664031	20726754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
25408	chr7	+	2720	1	Genic_Genomic	ENSMUSG00000030432.13	novel	NA	NA	NA	NA	-31	612	mono-exon	FALSE	NA	NA	NA	NA	NA	44	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTACACTGTAGCTGTCC	2778	False	NA	NA	False	NA	NA	NA	4795957	4798677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_4796000_4798700
25409	chr11	-	3230	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	116	166	116	-166	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTTAACCTCTGTAAAC	NA	False	NA	NA	False	NA	NA	NA	40646022	40639544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
25410	chr11	+	1621	5	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	16	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4732.78147604556	1	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACAGTATTGTTTGTCT	3051	False	NA	NA	False	NA	NA	NA	75623754	75656459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647780_75655445
25411	chrX	-	3146	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.794742517923	1	122	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231295	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086814_23086878_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
25412	chr3	+	1910	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	6	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	689.290553725801	1	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAGTCATTTGAGACCG	3847	False	NA	NA	False	NA	NA	NA	88204465	88229059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216668_88219001_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
25413	chr1	+	2929	15	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	32.3930737116717	5	27	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	NA	False	NA	NA	NA	180468906	180518252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486723_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
25414	chr7	-	1773	17	NIC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	18	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	491.684588303315	3	42	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGGGGCTCAGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	33929649	33901584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33926627_33926663_33928352_33928422_33928707_33928799_33929516
25415	chr5	-	2171	15	NIC	ENSMUSG00000003623.5	novel	2996	18	NA	NA	-97	-2645	intron_retention	FALSE	canonical	3	171	junction_6	20.2192068719476	3	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATTTTTCTACCACATC	NA	False	NA	NA	False	NA	NA	NA	9047139	9018677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_9018964_9019047_9019127_9019915_9020040_9023585_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
25416	chr1	+	2139	13	Antisense	novelGene_ENSMUSG00000064823.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGCCAGCTACAGCTAGC	NA	False	NA	NA	False	NA	NA	NA	86278530	86287062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86278756_86279086_86279216_86279919_86280044_86280238_86280354_86280845_86281004_86281451_86281578_86282741_86282866_86283772_86283915_86284091_86284172_86284268_86284464_86284678_86285140_86285820_86285945_86286926
25417	chr9	+	2504	9	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	13	1560	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	160.139587547864	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGTCTGCTAATGTGT	9227	False	NA	NA	False	NA	NA	NA	63509954	63549170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524886_63526429_63526514_63543665_63543766_63546321_63546427_63546874_63546925_63547488
25418	chr16	+	1592	12	ISM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	15	5350	15	-1652	5prime_fragment	FALSE	canonical	3	2673	junction_8	238.241838377979	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTTGATGTCTAATGGA	NA	False	NA	NA	False	NA	NA	NA	20470416	20476814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723
25420	chr10	+	901	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	24	-7	10	0	multi-exon	FALSE	canonical	3	1529	junction_8	1099.33345259753	12526	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTGTTTTATTAGGT	NA	False	NA	NA	False	NA	NA	NA	128657786	128713493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
25421	chr13	-	1264	6	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	3735	-5	intron_retention	FALSE	canonical	3	708	junction_5	32.1645767887594	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCAGTTCTTCCTCTC	NA	False	NA	NA	False	NA	NA	NA	55680502	55678233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679923_55680160
25424	chr11	+	1895	9	ISM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	9296	-1	-17	1	3prime_fragment	FALSE	canonical	3	1103	junction_5	70.6194688099535	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4833246	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
25425	chr5	-	2125	12	NNC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	229.467151360971	7	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92582954	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573643_92576023_92576180_92578659_92578813_92578897_92578982_92582862
25426	chr19	-	4142	24	NNC	ENSMUSG00000024943.10	novel	3448	24	NA	NA	-25	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	126.082938466712	1	99	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCTTAAAATTTCATAT	NA	False	NA	NA	False	NA	NA	NA	23251207	23185277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23234959_23237006_23237152_23238696_23238832_23240967_23241131_23243029_23243069_23246086_23246233_23250997
25427	chr11	-	2160	4	FSM	ENSMUSG00000004394.13	ENSMUST00000130621.2	886	4	13	-1287	8	-5	multi-exon	FALSE	canonical	3	463	junction_2	40.4337592722825	866	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACTAAATTCTCCCTTT	5351	False	NA	NA	False	NA	NA	NA	6224857	6220373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397
25428	chr19	-	2800	10	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-10791	-6530	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGGCGCAGAGGATCACG	NA	False	NA	NA	False	NA	NA	NA	10593809	10582925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10583349_10583405_10584208_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213
25429	chr4	-	2093	8	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	-32	7	intron_retention	FALSE	canonical	3	2352	junction_7	266.64567944624	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTCATTGATTGGGGG	0	True	NA	NA	False	NA	NA	NA	43031402	43028018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
25431	chr14	-	2909	27	NNC	ENSMUSG00000002319.17	novel	3824	30	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	101.509006508619	1	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGCTGTGACATCATAC	9792	False	NA	NA	False	NA	NA	NA	55873094	55863196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865105_55866397_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
25432	chr1	+	4091	14	FSM	ENSMUSG00000026584.15	ENSMUST00000027876.11	4368	14	269	8	229	4	multi-exon	FALSE	canonical	3	75	junction_8	12.9505203112215	78	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATTATTTCTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	163757602	163782687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
25433	chr8	+	3013	7	ISM	ENSMUSG00000055681.15	ENSMUST00000134822.8	2753	8	-208	26	43	-23	intron_retention	FALSE	canonical	3	1342	junction_3	22.2916277258227	17	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAATAAAGTCTATCCATT	495	False	NA	NA	False	NA	NA	NA	70755210	70765617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70755583_70757283_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355
25434	chrX	-	3302	7	NIC	ENSMUSG00000031392.19	novel	2052	14	NA	NA	328	-374	intron_retention	FALSE	canonical	3	354	junction_4	20.9158366369175	13	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACTGTCTGGTTAAACT	NA	False	NA	NA	False	NA	NA	NA	73065774	73057905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_73059108_73060153_73060304_73060735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454
25435	chr8	+	2152	16	ISM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	25	-1	0	0	intron_retention	FALSE	canonical	3	38	junction_1	132.38049537434	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	NA	False	NA	NA	NA	85415917	85426416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969
25436	chr12	-	2639	6	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAAAGAGAAAAACTCACT	3519	False	NA	NA	False	NA	NA	NA	24764085	24759812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24760488_24761443_24761540_24761666_24762763_24762857_24762972_24763076_24763423_24763773
25437	chr13	-	3030	16	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	-11	-5	intron_retention	FALSE	canonical	3	10	junction_15	36.5910735927038	198	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTATATTCAGACCTTC	NA	False	NA	NA	False	NA	NA	NA	63579519	63459573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63553910_63554070_63579263
25438	chr14	-	1988	7	NNC	ENSMUSG00000037722.9	novel	710	7	NA	NA	-30	-744	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	575.684423582535	2404	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGAGTTGTGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	45626280	45614534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45615944_45616128_45616211_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
25441	chr9	-	3479	10	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	181	junction_9	24.6986779273309	35	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAAATTTATTTTCATG	9278	False	NA	NA	False	NA	NA	NA	26910815	26885441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_26887057_26888851_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
25442	chr8	+	2364	17	NNC	ENSMUSG00000031864.17	novel	4201	17	NA	NA	-2	160	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	173.809510941576	1	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTTTTAGTTTCAAGTA	NA	False	NA	NA	False	NA	NA	NA	69246605	69280313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257575_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
25443	chr13	+	4012	16	NNC	ENSMUSG00000114138.2	novel	528	3	NA	NA	571	75620	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	93	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGCGCTGGAGGCGAGCA	NA	False	NA	NA	False	NA	NA	NA	9734899	9815200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_9737021_9739098_9739285_9739487_9739760_9740480_9740553_9740940_9741149_9743467_9743581_9744299_9744387_9745167_9745223_9745776_9745865_9747681_9747772_9748662_9748744_9760183_9760343_9760962_9761036_9770808_9770968_9785364_9785505_9815092
25444	chr5	-	2081	6	NNC	ENSMUSG00000079555.3	novel	2073	5	NA	NA	-2	-33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	227.912790338761	599	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGAGTTCTAAAAACGG	9403	False	NA	NA	False	NA	NA	NA	34326794	34311256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34311451_34312653_34312772_34320866_34321096_34323259_34323700_34324748_34325788_34326733
25445	chr17	-	2712	19	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	478	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	217.836074963619	1	76	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCATGTGCCTGTGGGGT	NA	False	NA	NA	False	NA	NA	NA	36274686	36267713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270392_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649
25446	chr2	-	739	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	108	13	-17	-13	multi-exon	FALSE	canonical	3	2071	junction_1	68	9089	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCCTTTGGCTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	148717388	148713654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_148713964_148714736_148714851_148717072
25447	chr11	-	1998	10	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	49	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	232.181814666283	166	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTCCTGTCCCGGGTG	3907	False	NA	NA	False	NA	NA	NA	55310675	55285329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286745_55289409_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
25448	chr8	-	2655	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	4	intron_retention	FALSE	canonical	3	191	junction_9	18.3816293489087	13	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578640	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
25449	chr10	+	3221	15	NNC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	-5	12	intron_retention	FALSE	canonical	0	0	junction_8	153.04649486949	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTGAACCTATTAAGAA	NA	False	NA	NA	False	NA	NA	NA	93289307	93320692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305068_93307715_93307828_93308760_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
25450	chr12	-	5463	27	FSM	ENSMUSG00000035021.14	ENSMUST00000173433.8	5788	27	325	0	154	0	multi-exon	TRUE	canonical	2	19	junction_26	7.265566842199	52	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGAATTCTGAAGTT	NA	False	NA	NA	False	NA	NA	NA	55032967	54940335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_54941287_54941742_54941831_54942814_54942958_54945122_54945584_54946784_54947012_54947095_54947344_54955783_54955933_54958094_54958247_54959361_54959526_54963252_54963853_54965222_54965348_54967822_54967931_54969227_54969394_54969824_54970050_54970169_54970266_54974348_54974496_54976311_54976451_54977036_54977133_54981524_54981692_54982266_54982367_54988286_54988422_54990761_54990850_54993586_54993689_55001482_55001627_55021888_55022168_55032450_55032593_55032946
25451	chr3	+	3195	24	Fusion	ENSMUSG00000097532.3_ENSMUSG00000015522.19	novel	2825	18	NA	NA	-236	-12	multi-exon	FALSE	canonical	0	0	junction_13	86.5907088010118	93	16	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAATTTCCCAGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	95334745	95402866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_95335007_95335864_95336134_95337597_95337750_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
25453	chr11	+	1148	1	NIC	ENSMUSG00000046311.14	novel	3872	4	NA	NA	5	-166	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGATGCTCTTGCAGAGG	5634	False	NA	NA	False	NA	NA	NA	49104423	49105571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_49104400_49105600
25455	chr4	-	2668	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	17	-46	-2	46	multi-exon	TRUE	canonical	3	109	junction_1	14.396180048888	150	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATAAGTATTCATGTGCA	NA	False	NA	NA	False	NA	NA	NA	129512875	129508872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
25457	chr1	+	3808	16	Antisense	novelGene_ENSMUSG00000094410.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAAACCCAGGACTGCCA	NA	False	NA	NA	False	NA	NA	NA	133549854	133589087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_133549922_133550720_133550889_133552220_133552551_133553588_133553671_133554502_133555011_133561501_133561596_133563731_133563795_133565086_133565198_133566270_133566350_133566568_133566688_133566777_133566984_133568349_133568476_133573466_133573587_133575074_133575267_133581709_133583136_133588970
25458	chr14	-	3776	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228181.2	793	5	-20	-2963	-4	0	multi-exon	FALSE	canonical	3	35	junction_1	108.841628065736	24	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGTTTCTTGATGTCTT	NA	False	NA	NA	False	NA	NA	NA	31216969	31198776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31201768_31209527_31209699_31214278_31214414_31215553_31215922_31216858
25459	chr10	+	4104	15	Antisense	novelGene_ENSMUSG00002076247.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	205	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCGCCGCAGAGATTGG	1326	False	NA	NA	False	NA	NA	NA	60934419	60983426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_60936774_60937441_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941299_60942042_60942150_60943355_60943443_60947938_60948069_60949215_60949294_60949790_60949937_60953473_60953540_60959085_60959253_60982039_60982111_60983301
25460	chr7	+	2217	2	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	68	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	285	False	NA	NA	False	NA	NA	NA	44465721	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465844_44478139
25461	chr12	-	2441	12	Antisense	novelGene_ENSMUSG00002074888.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTACAGTTTTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	109628144	109609272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_109609896_109611695_109611761_109615581_109615677_109616505_109616592_109617446_109617534_109618292_109618371_109620717_109620866_109622281_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
25462	chr19	+	2687	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	-13	-1512	-13	1512	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	1908	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGCCCTGTGTTGTGA	148	False	NA	NA	False	NA	NA	NA	11747741	11753836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
25463	chr11	-	2685	1	NIC	ENSMUSG00000035455.13	novel	2092	4	NA	NA	-1603	-92	mono-exon	FALSE	NA	NA	NA	NA	NA	2	93	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTTTGACGGAGTTGCT	NA	False	NA	NA	False	NA	NA	NA	11753064	11750379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_11750400_11753100
25464	chr7	-	2252	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	6	1	4	-1	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	2	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGGTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	143102837	143067320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
25465	chr2	+	2214	3	FSM	ENSMUSG00000065258.3_ENSMUSG00000062647.17	ENSMUST00000129673.8	834	3	-1386	6	-11	-6	multi-exon	FALSE	canonical	3	4686	junction_2	409.5	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26802814_26802999_26803070_26803176
25467	chr7	-	4004	4	NIC	ENSMUSG00000003438.18	novel	1515	11	NA	NA	1841	-8	intron_retention	FALSE	canonical	3	2171	junction_2	122.14017448089	6	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCCTAGCTGCCGTGTGT	4630	False	NA	NA	False	NA	NA	NA	28009523	28004948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28005456_28005847_28007077_28007169_28007693_28007778
25468	chr17	+	1328	6	NNC	ENSMUSG00000046711.17	novel	917	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2265.42578779354	270	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775626	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411_27781523_27781798
25470	chr13	+	2127	3	ISM	ENSMUSG00000062382.10_ENSMUSG00000076033.3	ENSMUST00000221435.2	491	4	-11	-1299	-11	648	intron_retention	FALSE	canonical	3	85	junction_2	7	6	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTGTTTCATTTTTCTT	1236	False	NA	NA	False	NA	NA	NA	74547801	74556113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_74547912_74553897_74554023_74554221
25471	chr17	-	2554	10	Antisense	novelGene_ENSMUSG00000024151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCCTCCCCAACCTCGCC	NA	False	NA	NA	False	NA	NA	NA	88016856	87979959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_87980232_87985632_87985789_87987225_87987505_87989956_87990108_87992866_87993013_87993721_87993856_87996367_87996568_88003920_88004031_88014607_88014735_88015877
25472	chr13	+	2014	3	FSM	ENSMUSG00000071180.6	ENSMUST00000226042.2	1092	3	3	-925	0	-8	multi-exon	FALSE	canonical	3	16	junction_1	87.5	1220	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAAGAGGTCCTGAGT	NA	False	NA	NA	False	NA	NA	NA	108181022	108185698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108181168_108182958_108183103_108183973
25473	chrX	-	2952	16	NNC	ENSMUSG00000016382.16	novel	3149	16	NA	NA	-39	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	82.1776936481752	15	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATTCTCTACTCTCTT	NA	False	NA	NA	False	NA	NA	NA	74918744	74829271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74830506_74834567_74834615_74834953_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
25475	chr8	+	2698	22	FSM	ENSMUSG00000032939.15	ENSMUST00000079961.14	2707	22	9	0	-4	0	multi-exon	FALSE	canonical	3	950	junction_1	70.7360075664432	1	75	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	94941200	95041488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
25476	chr8	+	2607	17	NNC	ENSMUSG00000005410.7	novel	2604	17	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	469.316553451666	1	92	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	NA	False	NA	NA	NA	75836194	75854325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847542_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
25478	chr15	+	3020	4	NIC	ENSMUSG00000023051.12	novel	1081	6	NA	NA	-26	-5	intron_retention	FALSE	canonical	3	365	junction_2	17.1723291631883	6	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAACCCCTTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	102427207	102432104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427727_102428909_102429649_102430158_102430232_102430415
25479	chr4	-	2232	3	NNC	ENSMUSG00000040738.11	novel	372	4	NA	NA	8727	-1658	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.5	10	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAGACAGGGTTTCTCT	4818	False	NA	-90	True	NA	NA	NA	11204458	11200815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_11201415_11202187_11202345_11202982
25480	chr4	-	1115	9	NNC	ENSMUSG00000040738.11	novel	3433	28	NA	NA	13524	7373	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTGGCGCCGGCGCCAA	9615	False	NA	NA	False	NA	NA	NA	11199661	11191784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_11191814_11192678_11192716_11192812_11192909_11192989_11193045_11193923_11194076_11195017_11195154_11197150_11197298_11198726_11198823_11199294
25482	chr15	-	2061	7	NNC	ENSMUSG00000063765.13	novel	2548	6	NA	NA	5766	3197	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGACAGCGCGGACCTTAA	NA	False	NA	NA	False	NA	NA	NA	81572463	81567168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81567257_81568041_81568190_81568497_81568584_81568913_81569148_81569579_81569652_81570413_81570522_81571138
25484	chr15	-	1918	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	9	2944	6	1103	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGCTTAAACAGGCATTA	NA	False	NA	NA	False	NA	NA	NA	38519501	38490614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
25485	chr11	-	2977	10	NNC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	14	33	intron_retention	FALSE	non_canonical	0	0	junction_1	75.7003514514731	557	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTGTGTGTATATGTA	NA	False	NA	NA	False	NA	NA	NA	87295235	87269383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87270101_87270159_87270308_87271653_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87293683_87295129
25486	chr16	-	3186	5	NIC	ENSMUSG00000004071.14	novel	3953	6	NA	NA	4	-4	intron_retention	FALSE	canonical	3	434	junction_4	30.8139578762612	17	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATATTTCTATTTTAGA	NA	False	NA	NA	False	NA	NA	NA	4607850	4584708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4586514_4586608_4587660_4587906_4588016_4588534_4588600_4607694
25487	chr17	+	2699	12	Intergenic	novelGene_107	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	175	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCAGCGTGCCACGCCC	NA	False	NA	NA	False	NA	NA	NA	26431689	26463172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_26432694_26432778_26432880_26433300_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435664_26436265_26436404_26437096_26437291_26437606_26437726_26439254_26439558_26462967
25488	chr9	+	2436	12	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1103.3444574273	29	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569736	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628636_72655700
25489	chr4	-	3158	9	NNC	ENSMUSG00000043207.11	novel	3429	10	NA	NA	212	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	92.144502684642	1	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTACGTCCTGGTGTTG	NA	False	NA	NA	False	NA	NA	NA	120955226	120916440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120952713_120952896_120955073
25491	chr18	+	1660	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	269	542	6	-328	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	585	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACGCAAAGCTCAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	77861697	77870027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
25492	chr7	-	2734	9	FSM	ENSMUSG00000062300.15	ENSMUST00000075447.14	2735	9	-16	17	-16	-17	multi-exon	FALSE	canonical	3	309	junction_4	306.654528745297	517	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTGTTTTCTGTGAGA	NA	False	NA	NA	False	NA	NA	NA	19483514	19450585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19451713_19453120_19453208_19453357_19453422_19455277_19455432_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
25493	chr11	+	2719	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	-22	284	-7	-284	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	2338	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAAGAGCTTGTTGGGAC	7309	False	NA	NA	False	NA	NA	NA	17207571	17218892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
25494	chr17	+	1765	3	NNC	ENSMUSG00000071172.14	novel	4010	4	NA	NA	-139	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1011	2	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATTTCAGTAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	29255213	29261851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29255423_29257463_29257526_29260357
25495	chr3	-	3150	8	NIC	ENSMUSG00000037174.19	novel	2611	7	NA	NA	-8	-5	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	99.3016431210008	276	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTATCTTGTGGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	51184873	51162656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51173233_51173467_51174173_51174288_51184625
25496	chr10	+	3121	4	NIC	ENSMUSG00000006732.15	novel	1089	5	NA	NA	11	-6	intron_retention	FALSE	canonical	3	390	junction_2	19.2006944318862	9	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTATGTGTTTGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	126877811	126882228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126877940_126878928_126880739_126880894_126880997_126881147
25497	chr15	-	1559	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	-25	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4701.41214822738	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCTTTAAGAAAAGAGTTT	133	False	NA	NA	False	NA	NA	NA	98832344	98829323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830076_98830139_98830444_98830572_98830722_98830853_98831077_98832213
25498	chrX	+	4794	8	Intergenic	novelGene_4006	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	189	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGGTGGAGTCCCACGA	NA	False	NA	NA	False	NA	NA	NA	106827381	106859916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_106831459_106831870_106831945_106834341_106834386_106836504_106836613_106836698_106836772_106837116_106837263_106851399_106851496_106859740
25499	chr8	+	2961	6	Antisense	novelGene_ENSMUSG00000037251.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	109	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCGGCCGGAAGCGGTCGG	NA	False	NA	NA	False	NA	NA	NA	26471452	26484153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_26473671_26476271_26476557_26477518_26477669_26479193_26479374_26479679_26479769_26484114
25500	chr4	-	2390	3	NIC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	18	-8	intron_retention	FALSE	canonical	3	1957	junction_2	48.5	42	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGAACTTCTTTTTGTG	17	False	NA	NA	False	NA	NA	NA	41098165	41092729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41094385_41094700_41095272_41098001
25501	chr17	-	2525	8	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	1	-726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	18.6580397946727	1	84	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGGAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	22533817	22505577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507332_22507663_22507883_22508749_22508877_22511388_22511437_22528185_22528296_22528485_22528579_22532217_22532302_22533727
25502	SIRV7	-	1965	6	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1999.67643382623	5	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147918	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1998_2533_2676_2993_3115_3809_3897_114680_114989_147608
25503	chr7	+	3059	21	NNC	ENSMUSG00000025504.15	novel	1652	5	NA	NA	1780	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20.8611480987984	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCAACTTAGATATCTGT	NA	False	NA	NA	False	NA	NA	NA	140920698	140942926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140920753_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937230_140937455_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
25504	chr11	+	2913	15	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	629	35	intron_retention	FALSE	canonical	3	37	junction_12	263.688050080208	1	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGAGAAGATGAGGACAG	NA	False	NA	NA	False	NA	NA	NA	115455979	115474644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460947_115468755_115468891_115468989_115469113_115469314_115469723_115471329_115471414_115471555_115471622_115471746_115472686_115472764_115472866_115473788_115473855_115474151_115474254_115474546
25505	chr11	+	2706	15	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	4	109	intron_retention	FALSE	non_canonical	0	0	junction_14	63.654400107622	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGGAGTGTCTGAAGAC	NA	False	NA	NA	False	NA	NA	NA	29476439	29495388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912_29495089_29495280
25506	chr19	+	2523	9	Antisense	novelGene_ENSMUSG00000013662.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAAAAGACACAGAAAAG	1085	False	NA	NA	False	NA	NA	NA	32650222	32684409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_32651761_32654112_32654249_32661399_32661452_32664631_32664721_32673189_32673299_32675839_32676039_32678917_32679036_32679931_32680038_32684233
25508	chr19	-	2092	10	NIC	ENSMUSG00000024982.11	novel	2168	11	NA	NA	2	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	173.840355314301	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGTTTTCACCAAAAAG	7447	False	NA	NA	False	NA	NA	NA	55304456	55286746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
25509	chr8	-	4627	1	Intergenic	novelGene_1728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	79	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAAATGCTTTCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	108408878	108404251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_108404300_108408900
25510	chr1	+	2315	10	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	2050	-247	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	219.984904083647	3	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCTGTGTTTTTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	167179930	167195854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167180235_167182000_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
25511	chr19	-	1721	15	ISM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	1229	6705	5	-2287	internal_fragment	FALSE	canonical	3	689	junction_5	57.2577862096733	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGATCCTGCGGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	4977086	4963961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812
25513	chr6	-	1451	6	NNC	ENSMUSG00000030057.16	novel	1661	5	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4542.52878471893	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGAAAGATGACAGTTTG	NA	False	NA	NA	False	NA	NA	NA	87828058	87820068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820482_87820682_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
25515	chr12	-	3646	5	NIC	ENSMUSG00000079036.11	novel	1883	6	NA	NA	0	-36	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	125.643095711623	1	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAGAAAGTGGTAATTA	NA	False	NA	NA	False	NA	NA	NA	87490598	87472974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87490411
25516	chr17	-	1858	1	ISM	ENSMUSG00000077450.14	ENSMUST00000235046.2	5822	5	15707	15	5489	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	9	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTCAACTTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	33963330	33961472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_33961500_33963300
25517	chr8	-	2223	8	NIC	ENSMUSG00000008892.13	novel	1354	9	NA	NA	5	-17	intron_retention	FALSE	canonical	3	2053	junction_7	120.771330561993	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATTTGGAACACAATTG	NA	False	NA	NA	False	NA	NA	NA	23083769	23067118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23067619_23068058_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
25518	chr19	-	2844	12	NNC	ENSMUSG00000024665.9	novel	3150	12	NA	NA	242	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	119.241126634193	77	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCTGTAGTTCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	10078868	10040128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066182_10066349_10066470_10069104_10069216_10078586
25519	chrX	-	2414	20	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-5	-642	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	26.6419784147202	2	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTTTCATTCAGCACA	NA	False	NA	NA	False	NA	NA	NA	47683273	47632276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47682390_47682476_47683240
25520	chr4	+	3955	13	FSM	ENSMUSG00000040720.16	ENSMUST00000055372.14	3954	13	1	-2	1	2	multi-exon	TRUE	canonical	3	55	junction_9	7.54799458281617	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACATTATACTTTTTTA	3	True	NA	NA	False	NA	NA	NA	11485958	11527623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594
25521	chrX	+	1537	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	107	181	44	-143	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	1	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCTGCCTGAGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	105230812	105247124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
25522	chr2	-	1757	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	29	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACATCCTTGGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	152185861	152179345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179566_152179739_152180608_152181634_152181928_152184956_152185248_152185776
25523	chrX	-	2773	8	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	79	-9	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	102.324214621756	469	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAAAATTCTTACAGTT	NA	False	NA	NA	False	NA	NA	NA	12539828	12521126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12532471_12532634_12535765_12535886_12539264_12539400_12539564
25524	chr19	+	3990	8	NIC	ENSMUSG00000039126.11	novel	2115	11	NA	NA	-16	-3	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	24.5165500119775	36	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACATTGTGGTTTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	17114113	17201293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_17114256_17145626_17145707_17156153_17156355_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17198147
25525	chr6	+	2462	8	NNC	ENSMUSG00000030327.9	novel	2476	8	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	193.677935906863	770	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTATTGGTTTTTCATCT	857	False	NA	NA	False	NA	NA	NA	122851501	122865896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122851623_122857371_122857473_122857616_122857722_122858400_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
25527	chr10	+	2255	12	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	37	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	396.010643483311	1	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACCAACAGATCTGGCCT	7027	False	NA	NA	False	NA	NA	NA	60113486	60138367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60136316_60136398_60136552_60136752_60137472
25528	chr16	+	2709	9	ISM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	15332	10	15332	-10	3prime_fragment	FALSE	canonical	3	873	junction_3	75.6809710231046	1	107	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTCCGTGACTACTGTG	NA	False	NA	NA	False	NA	NA	NA	13613908	13632693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
25529	chr3	+	2432	7	NNC	ENSMUSG00000078578.10	novel	3833	8	NA	NA	48	118	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1096.55232433295	3	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTTCGCTATACAGTTTT	NA	False	NA	NA	False	NA	NA	NA	135144562	135172829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144626_135145404_135145590_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
25531	chr6	+	2291	12	NNC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-5	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	152.442212327077	477	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	-19	True	NA	NA	False	NA	NA	NA	30047995	30140869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_30048113_30088831_30088988_30089910_30090146_30095335_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
25532	chr8	+	2169	17	NNC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_16	152.726829257338	396	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTCATTTTGAATTGGGA	NA	False	NA	NA	False	NA	NA	NA	85415911	85426418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426138_85426231
25533	chr8	+	4102	22	FSM	ENSMUSG00000038604.10	ENSMUST00000043531.10	4108	22	6	0	6	0	multi-exon	FALSE	canonical	3	65	junction_11	11.8587682955494	177	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTTCCTACATGGCTT	2648	False	NA	NA	False	NA	NA	NA	106331892	106348851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106331983_106341030_106341158_106341272_106341426_106341574_106341654_106342059_106342084_106342175_106342230_106342344_106342498_106342610_106342675_106342759_106342804_106342889_106343016_106343509_106343659_106343733_106343864_106343947_106345358_106345445_106345568_106346419_106346553_106346810_106346947_106347046_106347209_106347481_106347641_106347745_106347943_106348025_106348110_106348202_106348294_106348436
25535	chr19	+	3732	23	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	4138	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	364.320949345809	1	174	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	6055	False	NA	NA	False	NA	NA	NA	8879626	8894036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879892_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888637_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
25536	chr11	+	2932	17	NNC	ENSMUSG00000025579.15	novel	3363	20	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	150.211088451386	4	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCACGTCACCTCATGT	NA	False	NA	NA	False	NA	NA	NA	119158860	119176281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119165951_119169136_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
25537	chr16	-	2613	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	15	-393	15	393	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	1263	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAATTGCCAGGTGCCCA	NA	False	NA	NA	False	NA	NA	NA	10810970	10776745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
25538	chr9	+	6612	41	NNC	ENSMUSG00000033590.9	novel	6727	41	NA	NA	49	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	15.9529777784588	39	147	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCAAATTGGATGCACCA	5233	False	NA	NA	False	NA	NA	NA	75139406	75212725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158809_75159805_75159914_75163112_75163220_75165240_75165507_75169489_75169572_75170266_75170408_75173349_75173476_75174306_75174389_75176802_75176938_75177550_75177649_75178823_75178901_75180121_75180239_75180790_75181003_75182752_75182919_75183183_75183331_75184213_75184379_75185506_75185601_75186617_75186682_75189117_75189299_75191174_75191269_75191428_75191493_75192214_75192297_75193692_75193874_75195330_75195425_75196174_75196239_75196340_75196510_75198130_75198219_75199435_75199535_75201207_75201363_75202443_75202534_75203291_75203443_75204685_75204969_75208087_75208263_75208685_75208767_75211211
25539	chr12	+	5386	30	NNC	ENSMUSG00000034601.18	novel	5763	30	NA	NA	339	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	43.456348456414	1	184	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTAAGTCTGGCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	71183960	71290070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207899_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241079_71241241_71262830_71262971_71265964_71266074_71289717
25540	chr7	-	2608	16	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	4	-3	intron_retention	FALSE	canonical	3	112	junction_10	35.2773140826919	7	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAAAGCACTGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	30364415	30353143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
25541	chr11	-	2180	7	ISM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	16590	10	-6502	-10	3prime_fragment	FALSE	canonical	0	0	junction_2	204.391508847332	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAACAGAATGTATTTTGT	7192	False	NA	NA	False	NA	NA	NA	79955227	79937328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017
25542	chr9	-	5583	19	NIC	ENSMUSG00000032064.18	novel	5719	20	NA	NA	-42	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_5	10.077477638554	35	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTCTTCATTTTCATT	NA	False	NA	NA	False	NA	NA	NA	50639317	50574051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50577576_50578959_50579069_50580749_50580856_50592786_50592854_50593332_50593501_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
25543	chr4	+	4042	5	Antisense	novelGene_ENSMUSG00000028901.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCATCATCTTCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	131950268	131962203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_131953774_131955182_131955306_131958296_131958435_131959322_131959454_131962058
25544	chr17	-	1043	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-196	2765	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATGCCATCCCTCCGCA	NA	False	NA	NA	False	NA	NA	NA	35821644	35817208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
25545	chr14	+	1499	7	ISM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	3540	960	-15	-8	internal_fragment	FALSE	canonical	3	1356	junction_2	148.672645619682	1	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCCAAGCCACAGGACTC	NA	False	NA	NA	False	NA	NA	NA	55781385	55786321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
25546	chr7	-	2444	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	60	-759	0	759	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	20	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCATATACACTCAATGG	NA	False	NA	NA	False	NA	NA	NA	79765080	79743834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
25547	chr5	+	1545	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-35	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1064.7410860143	214	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATATATTCTCGCTGTG	721	False	NA	NA	False	NA	NA	NA	77099588	77115347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114619_77115115
25548	chr17	+	2126	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	21	90	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	731.601883236748	1	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAACCCGGGTGAACCAGC	520	False	NA	NA	False	NA	NA	NA	56610420	56629429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625053_56625280_56625335_56627396_56627543_56629020_56629126_56629355
25550	chr6	+	1354	5	Antisense	novelGene_ENSMUSG00000025823.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	187	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGACCACATCATCT	NA	False	NA	NA	False	NA	NA	NA	47773077	47780415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_47773837_47775297_47775536_47776122_47776279_47777873_47778027_47780367
25551	chr4	+	2212	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-7	400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	672.814920068414	43	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCGTTTATTTCGAGAT	4679	False	NA	NA	False	NA	NA	NA	135583415	135596093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135594436_135595104_135595162
25552	chr3	-	2943	9	NNC	ENSMUSG00000074513.10	novel	2799	8	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	76.2655721803751	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	NA	False	NA	NA	NA	84489920	84403399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84447876_84447942_84455240_84455343_84489720
25553	chr17	+	1811	1	FSM	ENSMUSG00000077709.3	ENSMUST00000104521.3	134	1	-662	-1015	-662	1015	mono-exon	FALSE	NA	NA	NA	NA	NA	62	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTATTATGTTTTTTTT	6237	False	NA	NA	False	NA	NA	NA	24939083	24940894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24939100_24940900
25557	chr18	-	2300	12	NNC	ENSMUSG00000044252.19	novel	2893	13	NA	NA	17405	0	intron_retention	FALSE	canonical	2	25	junction_11	103.443760422018	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	6583	False	NA	NA	False	NA	NA	NA	12935250	12888384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12935079
25559	chr5	+	2573	15	NIC	ENSMUSG00000005514.15	novel	918	8	NA	NA	9	-7	intron_retention	FALSE	canonical	3	11	junction_1	67.2465764245015	13	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTATTTGCCTGGTGTT	1643	False	NA	NA	False	NA	NA	NA	135698895	135764173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135698971_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
25560	chr17	-	2605	6	NIC	ENSMUSG00000002076.13	novel	1479	7	NA	NA	6	-2	combination_of_known_splicesites	FALSE	canonical	3	97	junction_3	514.177634675022	16	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATACCTTGCAGGGATTG	NA	False	NA	NA	False	NA	NA	NA	32253476	32163744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32165786_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
25561	chr7	-	3879	10	NIC	ENSMUSG00000030846.16	novel	2319	13	NA	NA	6	-4	intron_retention	FALSE	canonical	3	16	junction_5	67.6691296760281	2	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATTCTGACTATAAATTT	NA	False	NA	NA	False	NA	NA	NA	128063064	128044007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128048832_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
25562	chr15	-	2858	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	26	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.8380244062904	135	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTAATAGCTAAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	100320910	100285794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100286319_100286443_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
25563	chr7	+	2314	1	ISM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	12403	5	10054	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	87	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAGACTTGCTGTGAGT	12	True	NA	NA	False	NA	NA	NA	44477914	44480228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44477900_44480200
25564	chr6	-	1693	6	NIC	ENSMUSG00000030057.16	novel	952	6	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	4588.50247466426	2	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGAAAGATGACAGTTTG	NA	False	NA	NA	False	NA	NA	NA	87828004	87820068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87825996_87826092_87827885
25565	chr10	+	1822	5	NNC	ENSMUSG00000006498.17	novel	2108	4	NA	NA	-879	-2	intron_retention	FALSE	canonical	0	0	junction_1	732.903472498255	15	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	2096	False	NA	NA	False	NA	NA	NA	79696692	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79696812_79698253_79698376_79698486_79698704_79698811_79698890_79698978
25566	chr13	-	1721	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-19	-473	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	229.248046156705	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314468	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312515_34312854_34312966_34313228_34313321_34314261
25567	chr11	-	1276	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	2	496	0	21	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGTGGGGCTAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	69563141	69558257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
25569	chr7	-	4448	16	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	0	61965	0	9104	5prime_fragment	FALSE	canonical	3	19	junction_14	8.62142035217451	149	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGTTGAACAGTTCATG	NA	False	NA	NA	False	NA	NA	NA	73191494	73138350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73157553_73157662_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
25570	chr14	+	2637	16	NIC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	31	-271	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	270.049295911362	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTATCACTCCCTGC	NA	False	NA	NA	False	NA	NA	NA	122344580	122396745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_122344848_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
25571	chr2	-	1155	7	ISM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	4978	952	4978	-952	internal_fragment	FALSE	canonical	3	12105	junction_2	804.091913624031	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAAAACAACAAACTTG	8763	False	NA	NA	False	NA	NA	NA	154729724	154714289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623
25573	chr1	-	1991	12	Antisense	novelGene_ENSMUSG00000088323.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1437	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAACCCCACGTCACCCCG	NA	False	NA	NA	False	NA	NA	NA	143683208	143653032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_143653214_143659702_143659768_143661867_143661972_143670012_143670139_143670217_143670280_143670412_143670546_143672496_143672564_143674128_143674230_143675656_143675771_143677870_143677970_143678663_143678815_143682420
25574	chr11	+	3315	7	NNC	ENSMUSG00000038366.16	novel	3540	7	NA	NA	-66	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	240.969857497203	1	113	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCGGACTAGGCTTCT	4663	False	NA	NA	False	NA	NA	NA	97690597	97729581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724520_97724909_97725014_97726897
25575	chr7	+	3760	10	Fusion	ENSMUSG00000057215.7_ENSMUSG00000062542.12	novel	1294	6	NA	NA	-11	1	multi-exon	FALSE	non_canonical	0	0	junction_9	69.7903385722171	2	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTCGTTGTCTCATTAA	NA	False	NA	NA	False	NA	NA	NA	106842217	107147861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_106842336_106883988_106884145_106884819_106884938_107024253_107024606_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726_107147144_107147232
25576	chr5	-	936	1	Intergenic	novelGene_809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCACCCAGAGAACAAGCAA	NA	False	NA	NA	False	NA	NA	NA	110585439	110584503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_110584500_110585400
25577	chr5	-	2235	1	ISM	ENSMUSG00000043323.18	ENSMUST00000198415.3	2692	2	1203	9	1203	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	465	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATTACTAGTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	110579984	110577749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110577700_110580000
25578	chr2	-	2807	1	NIC	ENSMUSG00000023224.13	novel	1768	8	NA	NA	4875	-1941	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	120	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGTGTTCCCAAAGCACCA	934	False	NA	NA	False	NA	NA	NA	84600597	84597790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84597800_84600600
25579	chr11	-	3067	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	14	205	9	-136	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	1	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCCCTCTTCCCTGCC	9175	False	NA	NA	False	NA	NA	NA	102207492	102196954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
25581	chrX	-	1721	6	ISM	ENSMUSG00000031167.17	ENSMUST00000040010.10	2792	7	-22	3135	3	246	5prime_fragment	FALSE	canonical	3	529	junction_1	272.003970559255	1977	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTAAGTTTGCTTT	6539	False	NA	NA	False	NA	NA	NA	8011958	8008351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
25582	chr15	-	2545	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	29	287	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1012.63857152649	1	108	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGGAGAAAACAGAGTT	NA	False	NA	NA	False	NA	NA	NA	11399722	11383803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384236_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393363_11394309_11394501_11397266_11397348_11399571
25583	chr11	+	2082	13	NNC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.73409643523	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	4325	False	NA	NA	False	NA	NA	NA	102321334	102327631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102321378_102323861_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
25584	chr19	-	2032	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1619.98007317991	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886666_15886805_15892251_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902269
25586	chr6	-	3509	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	297	154	208	-154	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	1	167	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTTAGCAACATATTTAT	4445	False	NA	NA	False	NA	NA	NA	35516526	35485994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
25587	chr3	-	3434	33	FSM	ENSMUSG00000027855.14	ENSMUST00000196988.5	3189	33	0	-245	0	3	multi-exon	FALSE	canonical	3	8	junction_28	25.0723951787618	162	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTCATTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	102843416	102725811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102839958_102840124_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
25589	chr7	-	2922	6	NIC	ENSMUSG00000053801.19	novel	1898	7	NA	NA	4	-16	intron_retention	FALSE	canonical	3	459	junction_2	31.2640368474706	10	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCCCAGACACCAAGCTA	8638	False	NA	NA	False	NA	NA	NA	45480209	45474669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
25591	chr6	-	1414	10	Antisense	novelGene_ENSMUSG00000030007.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGAAGAGAGCAATTGAC	7200	False	NA	NA	False	NA	NA	NA	85444772	85436095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_85436249_85436921_85437029_85438024_85438152_85438488_85438543_85439007_85439177_85441758_85441925_85442879_85443070_85443604_85443710_85444012_85444145_85444561
25592	chr5	-	2720	5	NNC	ENSMUSG00000047881.15	novel	3241	7	NA	NA	-1861	-3	at_least_one_novel_splicesite	TRUE	canonical	1	8	junction_4	234.788601725041	24	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGAGCGACATCTTACA	3424	False	NA	NA	False	NA	NA	NA	64090118	64066410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64089916
25593	chr4	+	2633	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	5	994	5	502	multi-exon	FALSE	canonical	3	446	junction_2	23.5	1501	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTAGATCAAAGATGCTC	-32	True	NA	NA	False	NA	NA	NA	24898087	24904007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_24898303_24898572_24898677_24901693
25595	chr16	-	1961	10	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-17995	12179	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGGGGGAGAGACTCAG	NA	False	NA	NA	False	NA	NA	NA	38411657	38377505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38377590_38384476_38384667_38393415_38393636_38395163_38395352_38396104_38396187_38402327_38402487_38405535_38405879_38406580_38406771_38408544_38408664_38411271
25596	chrX	+	1880	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	7	357	7	-21	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTTTTTCCTTCCAACA	NA	False	NA	NA	False	NA	NA	NA	161543404	161561731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
25598	chr18	-	1656	9	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	7	-225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2175.79652081715	34	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	206	False	NA	NA	False	NA	NA	NA	35087403	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073326_35084290_35084459_35085448_35085537_35085729_35085789_35087222
25599	chr5	-	2340	12	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-41	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	176.776368040303	5	42	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTACAGTTTTCCAAACA	NA	False	NA	NA	False	NA	NA	NA	34093635	34055280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056710_34056806_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
25600	chr10	+	1624	9	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	0	15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1241.50442382418	14	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTCCTTTTAAGTG	903	False	NA	NA	False	NA	NA	NA	127894879	127912862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935_127912602_127912641
25601	chr7	-	1830	10	Genic_Genomic	ENSMUSG00000108645.2	novel	436	1	NA	NA	-8900	16550	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCTCACTCTTTAAGAGG	NA	False	NA	NA	False	NA	NA	NA	63861172	63835286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_63835369_63847021_63847102_63848907_63849106_63851633_63851846_63852751_63852879_63854169_63854342_63858023_63858197_63858614_63858741_63859704_63859776_63860583
25602	chr2	-	2663	2	NIC	ENSMUSG00000018770.10	novel	714	5	NA	NA	-9	0	intron_retention	FALSE	canonical	3	2058	junction_1	0	23	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	NA	False	NA	NA	NA	73741644	73738790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_73741405_73741595
25603	chr3	-	2594	13	FSM	ENSMUSG00000005968.15	ENSMUST00000006123.11	2631	13	35	2	-33	0	multi-exon	FALSE	canonical	3	34	junction_11	22.9474036294596	525	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	6476	False	NA	NA	False	NA	NA	NA	94566143	94520065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
25604	chr3	-	1783	4	NNC	ENSMUSG00000005625.16	novel	1332	10	NA	NA	484	-9	intron_retention	FALSE	non_canonical	0	0	junction_3	868.843803888567	19	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAAGTTTTCCCCTTTTGC	NA	False	NA	NA	False	NA	NA	NA	94942094	94940024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94940858_94940943_94941076_94941228_94941543_94941590
25605	chr11	-	3086	10	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	11	-2	intron_retention	FALSE	canonical	3	1008	junction_6	77.8218922513469	2	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCGTGGCTGGCAGTCA	NA	False	NA	NA	False	NA	NA	NA	96807207	96798643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96803881_96804207_96804309_96804490_96804623_96806976
25608	chr12	-	3175	12	FSM	ENSMUSG00000020628.17	ENSMUST00000168129.10	3230	12	55	0	12	0	multi-exon	FALSE	canonical	3	62	junction_11	21.4240924087157	277	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTGAGGAGACATGAGC	8285	False	NA	NA	False	NA	NA	NA	28800416	28740626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800327
25609	chr14	-	1920	14	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-4	0	intron_retention	FALSE	canonical	3	775	junction_9	85.8071320189962	757	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	30740979	30734390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
25610	chr3	-	2218	8	FSM	ENSMUSG00000038975.15	ENSMUST00000167111.6	1418	8	-807	7	3	-3	multi-exon	FALSE	canonical	3	355	junction_5	235.209329261041	18	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGGCTGTTGTGTATA	6157	False	NA	NA	False	NA	NA	NA	153618589	153612932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561
25611	chr11	+	2239	7	NIC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	-48	1	combination_of_known_splicesites	FALSE	canonical	3	5	junction_4	1090.58725261006	319	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCAGCTTAAAATTACTT	NA	False	NA	NA	False	NA	NA	NA	97206685	97220747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97217607_97217758_97218911_97219086_97219307
25612	chr9	+	3219	4	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	0	-6	intron_retention	FALSE	canonical	3	729	junction_3	82.0893821798329	21	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTGTTGTGAGTAATA	NA	False	NA	NA	False	NA	NA	NA	69919835	69930013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_69919944_69922573_69922693_69924100_69926798_69929718
25613	chr9	-	3044	18	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6361	37234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	100	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCCACGCGGTTTTCG	5018	False	NA	NA	False	NA	NA	NA	21316655	21279303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299124_21299817_21300049_21300600_21300780_21303590_21303733_21305003_21305099_21305496_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310732_21314453_21314798_21315355_21315486_21315989
25614	chr11	-	3082	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	22	10	22	-10	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	517	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTGGAACCTGACATCC	NA	False	NA	NA	False	NA	NA	NA	76969239	76935127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
25615	chr8	-	2743	14	NNC	ENSMUSG00000015023.8	novel	2547	12	NA	NA	-9	4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	167.78300299695	5	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTGTACACTTGAGG	7707	False	NA	NA	False	NA	NA	NA	111724411	111701623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111715171_111715233_111716105_111716242_111717108_111717160_111719688_111719738_111721780_111721933_111724298
25616	SIRV7	-	2059	4	NNC	SIRV7A	novel	2498	5	NA	NA	55	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	522.100245802151	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	114861	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2664_2982_3112_3809_3897_114680
25617	chr18	+	3511	9	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	-7	-1	intron_retention	FALSE	canonical	3	40	junction_1	96.8167566849871	1	101	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCTGTAATTGAAGTAGAC	954	False	NA	NA	False	NA	NA	NA	38429715	38450888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
25618	chr18	+	2617	4	NNC	ENSMUSG00000024317.16	novel	2769	6	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	222.502933813367	2	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	21135025	21161281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21153944_21154054_21159140
25619	chr15	+	2523	11	NNC	ENSMUSG00000022351.15	novel	2758	11	NA	NA	180	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	242.479359946367	2	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGAGTGAACTCTTATG	NA	False	NA	NA	False	NA	NA	NA	59187135	59203024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201665_59202573
25620	chr5	-	1828	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	39	11	39	-1	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	1249	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCCCATGACTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	31350444	31344913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
25622	chr13	-	1248	5	NNC	ENSMUSG00000058672.8	novel	1610	4	NA	NA	2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	155.992587964941	4	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATCTATGGTCCTTTTC	NA	False	NA	NA	False	NA	NA	NA	34261988	34258265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34259103_34259284_34259512_34260160_34260272_34260531_34260538_34261921
25623	chr9	+	749	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-43	-216	-43	216	mono-exon	FALSE	NA	NA	NA	NA	NA	69	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAAGCACCTGAC	NA	False	NA	NA	False	NA	NA	NA	96777667	96778416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
25624	chr2	-	2786	9	NNC	ENSMUSG00000027496.16	novel	1905	9	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	432.162856311136	6	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGGAGTACGTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	172212441	172198117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172211446
25625	chr17	-	2547	2	ISM	ENSMUSG00000036438.15	ENSMUST00000150137.2	657	5	10491	-1474	10490	-8	intron_retention	FALSE	canonical	3	7049	junction_1	0	6	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCAATTGTTGCTCTGA	NA	False	NA	NA	False	NA	NA	NA	87743786	87740847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_87742640_87743031
25628	chr10	-	2823	15	NNC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-21	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	116.141385511675	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACCGAGCCTCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	81332197	81322297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913_81331963_81332013
25629	chr14	+	3433	10	NIC	ENSMUSG00000004561.15	novel	1461	13	NA	NA	7	-44	intron_retention	FALSE	canonical	3	141	junction_8	17.9367888726418	2	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTCCTCCTTCGTCCCCT	NA	False	NA	NA	False	NA	NA	NA	52122381	52129148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52122762_52122844_52124437_52124679_52124762_52125429_52125504_52126198_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823
25630	chr9	+	2163	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	7	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7086.92563528079	3	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTTGTGTTTT	1901	False	NA	NA	False	NA	NA	NA	59563887	59586648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572650_59573154_59573238_59575831_59575964_59576195_59576370_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
25631	chr3	+	1660	10	Antisense	novelGene_ENSMUSG00000068739.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAATTGAAAGAGCCGTA	NA	False	NA	NA	False	NA	NA	NA	108333888	108344895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_108334297_108334574_108334704_108335487_108335650_108335923_108336052_108336556_108336777_108338778_108338936_108340332_108340477_108341363_108341523_108343200_108343285_108344826
25632	chr3	-	2249	15	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	116.372225629483	52	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGATATTTTTCATATG	NA	False	NA	NA	False	NA	NA	NA	95763082	95737927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741562_95742965_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
25633	chr3	-	1669	11	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	322.584702055135	5	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTACCTGGCCCTGATCC	NA	False	NA	NA	False	NA	NA	NA	157630700	157599890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616584_157624062_157624173_157625653_157625750_157626591_157626674_157630502
25634	chr1	+	3338	10	NIC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	90	junction_5	16.0100277218474	111	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTGTGTGTGTACTTA	75	False	NA	NA	False	NA	NA	NA	75168834	75176026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
25635	chr16	-	3398	5	FSM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	22	20	22	-20	multi-exon	FALSE	canonical	3	117	junction_1	14.2894191624432	207	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTGTTTAAAGAATTTG	NA	False	NA	NA	False	NA	NA	NA	10131810	10099632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
25636	chr11	+	1875	9	NNC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	-1	-10	intron_retention	FALSE	non_canonical	0	0	junction_8	213.909406934338	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTGAATACTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	68936476	68942480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725_68941814_68941879
25637	chr4	-	2397	4	FSM	ENSMUSG00000073910.11	ENSMUST00000102975.10	6030	4	15	3618	15	-3618	multi-exon	FALSE	canonical	3	22	junction_3	2.86744175568088	53	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACAGTTGATGTAATAAC	-17	True	NA	NA	False	NA	NA	NA	35157469	34952691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_34954048_34985915_34986119_35083769_35084390_35157251
25638	chr18	+	4118	18	NIC	ENSMUSG00000024498.17	novel	3526	23	NA	NA	-5631	18	intron_retention	FALSE	canonical	3	105	junction_16	201.839516228658	9	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTTACACAATATATTTT	NA	False	NA	NA	False	NA	NA	NA	42663726	42708637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707224_42707319_42707582
25639	chr2	-	2786	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5279	417	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_15	22.4311291636323	196	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCATGGAGTTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	71164463	71104616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
25640	chr9	+	3109	11	NNC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	16	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	311.986361881413	2	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAAGCTACTGGAGAACG	1232	False	NA	NA	False	NA	NA	NA	108394370	108437358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108394452_108405787_108405847_108405892_108406118_108410791_108411822_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
25642	chr2	+	2159	12	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-7	-441	intron_retention	FALSE	canonical	3	937	junction_8	58.7518946415087	38	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164675759	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
25643	chr12	+	4172	12	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	13	840	intron_retention	FALSE	non_canonical	0	0	junction_1	131.867952986286	1	207	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTTATTCTGTTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	85157644	85182459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157725_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170550_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
25644	chr7	-	2244	14	NNC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-6	0	intron_retention	FALSE	non_canonical	0	0	junction_10	328.639764292996	92	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGCCTGGTTTTTGAGG	7981	False	NA	NA	False	NA	NA	NA	126641587	126626900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633197_126633295_126633424_126634772_126634838_126634919_126635113_126641515
25645	chr7	-	4434	4	NIC	ENSMUSG00000030956.16	novel	5465	5	NA	NA	-183	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	54.8351063543137	101	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCCTGCGCATGGC	NA	False	NA	NA	False	NA	NA	NA	132415007	132313812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_132317732_132373306_132373359_132380864_132381115_132414794
25646	chr10	+	3389	16	Fusion	ENSMUSG00000020250.12_ENSMUSG00000056821.14	novel	894	3	NA	NA	-27	-14	multi-exon	FALSE	non_canonical	0	0	junction_9	325.722758731341	1	82	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTTGATGCACACGCG	NA	False	NA	NA	False	NA	NA	NA	82647929	82733530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_82647970_82654864_82654958_82708771_82708847_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717777_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
25647	chr10	-	1522	8	Antisense	novelGene_ENSMUSG00002075374.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGCAATAGTTCTGACCG	NA	False	NA	NA	False	NA	NA	NA	127926258	127920194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127920340_127920957_127921079_127921307_127921494_127921904_127922064_127922164_127922288_127924187_127924401_127924823_127925026_127925885
25648	chr2	+	4088	6	FSM	ENSMUSG00000027439.10	ENSMUST00000028928.8	4232	6	138	6	-50	-6	multi-exon	FALSE	canonical	3	53	junction_1	11.7983049630021	200	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAATAATGTCTGCTTTG	509	False	NA	NA	False	NA	NA	NA	148523080	148534863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_148523136_148525513_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
25649	chr19	+	544	1	Intergenic	novelGene_1206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTGTGTGTGAGA	360	False	NA	NA	False	NA	NA	NA	12466227	12466771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_12466200_12466800
25651	chr12	+	996	1	NIC	ENSMUSG00000021115.16	novel	1509	13	NA	NA	43487	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAAGGGTAATTTATAAA	9748	False	NA	NA	False	NA	NA	NA	106040462	106041458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_106040500_106041500
25652	chr1	+	2458	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	57	0	-45	0	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	604	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	NA	False	NA	NA	NA	165957863	165994079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
25653	chr17	-	1201	1	NIC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	6600	-4142	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGCCAGTGCTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	13168632	13167431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_13167400_13168600
25655	chr7	-	2527	9	NIC	ENSMUSG00000044702.14	novel	2559	13	NA	NA	7	-393	intron_retention	FALSE	canonical	3	22	junction_5	41.1574719826182	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAGCCTATTCTGAGAAG	NA	False	NA	NA	False	NA	NA	NA	121732125	121711187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121727360_121727667_121728145_121728240_121728896_121728957_121731942
25656	chr3	-	2793	18	NIC	ENSMUSG00000027742.14	novel	3182	19	NA	NA	7	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	37.7173975258708	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCTTTGTAGTATTTTT	NA	False	NA	NA	False	NA	NA	NA	52924651	52889545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
25658	chr5	+	3188	21	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	87	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	117.571797213447	1	125	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCCTATACTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	45827347	45857466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853380_45853511_45853814_45853887_45856182_45856253_45857189
25659	chr9	+	1730	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	708.88594988251	3	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTGATCTTTGAGTTCAA	1182	False	NA	NA	False	NA	NA	NA	108437671	108442776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437897_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
25660	chr2	-	1141	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	34	-175	34	175	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824587	28823446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824600
25661	chr7	+	2217	7	NNC	ENSMUSG00000045411.17	novel	759	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	327.553897176565	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896145	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896233_43896674_43896841_43897675_43897720_43898877_43899024_43899444_43899484_43899732_43899765_43900036
25662	chrX	-	2035	11	NNC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	414	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	546.737633605004	1	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAATTGTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100128544	100122837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123115_100123717_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426
25663	chrX	+	2731	24	NNC	ENSMUSG00000041718.17	novel	2996	19	NA	NA	-73	-150	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_20	366.516220495872	1	88	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGCAGCCGCAGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	143118791	143152617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143118899_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138652_143139798_143139962_143146860_143147104_143150894_143150936_143152556
25664	chr5	-	2661	12	NNC	ENSMUSG00000039753.17	novel	2858	11	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	164.344628828549	3	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACCAAGCAATATCTTTT	8865	False	NA	NA	False	NA	NA	NA	43939455	43901969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_43902718_43908203_43908353_43915563_43915708_43915855_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
25665	chr2	-	3241	4	FSM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	-33	-2334	-33	2334	multi-exon	FALSE	canonical	3	47	junction_3	57.393379409127	130	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATCAAGATGGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	156681773	156672634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156675347_156679742_156679834_156680337_156680457_156681454
25666	chr13	-	2008	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2567.58075305712	2	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGGTGGTCTTTTTTT	4771	False	NA	NA	False	NA	NA	NA	58550310	58539764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540281_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
25667	chrX	-	3106	23	Antisense	novelGene_ENSMUSG00000031060.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	97	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGACGATTGGTTGCCG	NA	False	NA	NA	False	NA	NA	NA	20517128	20484000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20484289_20486210_20486353_20501968_20502149_20505669_20505737_20507415_20507478_20508985_20509068_20510908_20510972_20511101_20511281_20511675_20511834_20512007_20512104_20512195_20512279_20513553_20513739_20513848_20513987_20514101_20514219_20514318_20514429_20514555_20514658_20515379_20515533_20515625_20515692_20515768_20515958_20516037_20516113_20516399_20516512_20516589_20516716_20516795
25668	chr18	-	3359	17	NIC	ENSMUSG00000041225.17	novel	4265	19	NA	NA	35	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	61.192192108144	2	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGAGTTTTTTTCCAT	-1	True	NA	NA	False	NA	NA	NA	6136063	6025216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6069830_6070092_6073210_6073287_6135817
25669	chr17	+	3962	24	NIC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	30	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	29.3253698304042	1	115	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTCCAGTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	25352394	25381071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25352589_25363403_25363473_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
25670	chr10	-	2173	10	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	518.429251575265	4	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8241	False	NA	NA	False	NA	NA	NA	128540906	128533812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128534795_128534839_128535080_128535340_128535545_128535844_128535987_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580_128540621_128540813
25672	chr2	+	2748	15	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAATTAGCATAAGAGGT	1064	False	NA	NA	False	NA	NA	NA	4995535	5011391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4996949_4997688_4997830_4998547_4998667_4999379_4999496_5000533_5000673_5001910_5002142_5003346_5003452_5003539_5003646_5004484_5004594_5005672_5005869_5006076_5006194_5008820_5008984_5009751_5009918_5011146
25673	chr11	+	2190	14	NIC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-9	-783	intron_retention	FALSE	canonical	3	864	junction_12	99.9495730844475	1993	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	NA	False	NA	NA	False	NA	NA	NA	3913999	3929221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3928033_3928826
25674	chr11	-	2474	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	380	7	-32	0	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	1	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCATTGTCACTGCTGCT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
25675	chr15	-	1560	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	6	1478	6	1404	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACGCAGAATAAACTTTGG	NA	False	NA	NA	False	NA	NA	NA	38300944	38296134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
25676	chr13	+	3246	2	ISM	ENSMUSG00000021591.9	ENSMUST00000223120.2	1333	3	6	8	-3	-5	intron_retention	FALSE	canonical	3	287	junction_1	0	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATGACTTTTGTCCGGT	NA	False	NA	NA	False	NA	NA	NA	75988025	75998265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_75988295_75995288
25677	chr2	-	1896	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	1	5	1	-5	multi-exon	FALSE	canonical	3	670	junction_5	45.0653969249135	1712	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGTGTATTTTTGATAG	NA	False	NA	NA	False	NA	NA	NA	93988308	93863038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
25678	chrUn_JH584304v1	-	2026	8	Intergenic	novelGene_4613	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_2	270.17454675503	106	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCCAACAATCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	59892	52195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_53770_54335_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
25680	chr10	+	3552	13	NNC	ENSMUSG00000015757.11	novel	3471	13	NA	NA	0	-574	intron_retention	FALSE	canonical	3	3	junction_7	94.9912276651551	19	81	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATCAGCTTACTTTTTTC	1152	False	NA	NA	False	NA	NA	NA	7668684	7698325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7677824_7677971_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
25681	chr11	+	2007	12	NNC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-21	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	188.150853842476	5	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAGTATCTGATTTGTTG	4313	False	NA	NA	False	NA	NA	NA	102321322	102327632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324824_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
25682	chr9	+	3618	10	FSM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	54	30	35	-30	multi-exon	FALSE	canonical	3	110	junction_7	15.6165470962654	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAAAGCTTTGTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	13739065	13757807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748132_13748269_13750935_13751038_13755324
25683	chr2	+	3878	18	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	125.274176816943	1	136	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGAAACCTTGTACAT	3611	False	NA	NA	False	NA	NA	NA	126549297	126601217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571117_126575896_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126596960_126597892_126598036_126600039_126600173_126600340
25684	chr2	+	2184	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	6	3	6	-2	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	1697	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTTTTGGTGTGTTATT	-3	True	NA	NA	False	NA	NA	NA	13578768	13587634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
25686	chr7	-	925	7	ISM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	1239	14	301	-14	3prime_fragment	FALSE	canonical	3	15796	junction_2	909.956409212368	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTTAAGTGTGTACGAT	NA	False	NA	NA	False	NA	NA	NA	44776946	44774995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919
25687	chrX	+	1777	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	755.657869889893	124	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357357	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917_139376538_139376729
25688	chr16	+	2491	6	NIC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	19	-12	intron_retention	FALSE	canonical	3	369	junction_3	79.9864988607452	22	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTAAATCTGGCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	48104116	48114588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48104205_48108240_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
25689	chr5	+	2292	11	FSM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	-4	-797	1	299	multi-exon	FALSE	canonical	0	0	junction_10	59.9796632201282	447	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACTTAAAATAGCTGTGC	NA	False	NA	NA	False	NA	NA	NA	3593833	3620537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
25690	chrX	+	3420	18	NIC	ENSMUSG00000031351.16	novel	3557	19	NA	NA	19	-31	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	17.8703520102112	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGCAGTATTATAACTTC	NA	False	NA	NA	False	NA	NA	NA	72030984	72075118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72031126_72040640_72040719_72040887_72041012_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
25691	chrX	+	3311	23	NIC	ENSMUSG00000031060.17	novel	3698	24	NA	NA	0	-2	combination_of_known_splicesites	FALSE	canonical	3	25	junction_5	114.667107116843	3	115	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTTCCATTTCTACTTT	555	False	NA	NA	False	NA	NA	NA	20484021	20517125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
25692	chr1	-	2237	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2592.84283447449	2	85	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287093	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86284961_86285120_86285176_86285828_86285946_86286927
25695	chr6	+	3123	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	39984	-1	-34	0	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	671	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCATGTCTAATAACTGAG	5692	False	NA	NA	False	NA	NA	NA	83254340	83281927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
25696	chr15	-	3685	2	FSM	ENSMUSG00000009739.18	ENSMUST00000177335.2	3654	2	-38	7	-38	-7	multi-exon	FALSE	canonical	3	66	junction_1	0	82	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCGTACTTCTCTGCC	8468	False	NA	NA	False	NA	NA	NA	100478150	100473208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_100476500_100477756
25698	ERCC-00060	+	479	1	FSM	ERCC-00060A	DQ516763	506	1	0	27	0	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	355	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTTAATTATCTCATCCAAA	NA	False	NA	NA	False	NA	NA	NA	0	479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00060_+_0_500
25699	chr11	-	2609	6	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	264	-6	intron_retention	FALSE	canonical	3	232	junction_1	26.8223787162884	39	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATATCTGCGGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	77784658	77771446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_77772081_77772326_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
25700	chr8	+	2165	9	NNC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	-7	3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	238.353597623363	39	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	43633570	43646921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_43633650_43635438_43635474_43636158_43636403_43636739_43636836_43638315_43638496_43640023_43640749_43643105_43643129_43643305_43643407_43646239
25701	chr6	-	1579	2	Genic_Genomic	ENSMUSG00000096403.3	novel	843	1	NA	NA	-55	723	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAATAAAGTCCC	-4	True	NA	NA	False	NA	NA	NA	7983438	7981817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_7983103_7983144
25702	chr12	+	5154	22	FSM	ENSMUSG00000021171.9	ENSMUST00000100986.4	5560	22	406	0	351	0	multi-exon	FALSE	canonical	3	167	junction_13	20.3537869692824	111	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTAATATGTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	116245221	116336711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_116245293_116281449_116281492_116282423_116282559_116284746_116284824_116287459_116287533_116287740_116287831_116297820_116297877_116303166_116303288_116305695_116305873_116307057_116307141_116310123_116310173_116311345_116311436_116311838_116311935_116320731_116320807_116321467_116321555_116327014_116327165_116329174_116329549_116330549_116330649_116331327_116331460_116332355_116332462_116333631_116333682_116333790
25703	chr9	+	1342	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-165	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	6084.3234952673	23	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACATGTGGTGACAAACC	NA	False	NA	NA	False	NA	NA	NA	64080656	64085783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085535
25704	chr11	-	3342	3	FSM	ENSMUSG00000034566.11	ENSMUST00000141474.8	420	3	-2926	4	18	-4	multi-exon	FALSE	canonical	3	2984	junction_1	128	16	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCGTCTCTGAGTAGAT	NA	False	NA	NA	False	NA	NA	NA	115310770	115306518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115306706_115306840_115306904_115307678
25705	chr19	+	3276	8	NIC	ENSMUSG00000074925.5	novel	12574	7	NA	NA	-14	1790	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	7.20544012166771	32	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGTCCTCTAATATACCG	NA	False	NA	NA	False	NA	NA	NA	23664813	23700166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117_23686332_23695176_23695467_23697421_23697719_23698129
25706	chrX	+	2323	16	FSM	ENSMUSG00000001127.13	ENSMUST00000001155.11	2358	16	31	4	-1	-4	multi-exon	FALSE	non_canonical	1	66	junction_12	87.7031356337959	399	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCTTTGCTTGTTTAT	6304	False	NA	NA	False	NA	NA	NA	20714812	20726754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
25707	chr6	-	1947	15	NIC	ENSMUSG00000029782.21	novel	3998	16	NA	NA	-1	-20	combination_of_known_splicesites	FALSE	canonical	1	2	junction_10	339.822890545613	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACACCACAAATCCTCCTA	1	True	NA	NA	False	NA	NA	NA	30509718	30481040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30481137_30482594_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
25708	chr9	+	1419	1	Genic_Genomic	ENSMUSG00000032301.14	novel	NA	NA	NA	NA	1996	-514	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACTAGGTAAACATCTCC	NA	False	NA	NA	False	NA	NA	NA	54860383	54861802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_54860400_54861800
25709	chr4	-	2004	4	ISM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	194	19115	-4	-17277	5prime_fragment	FALSE	canonical	3	863	junction_3	46.783187863448	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGGTGTGATTTAGCAG	NA	False	NA	NA	False	NA	NA	NA	131939420	131931337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_131933027_131938062_131938143_131938742_131938768_131939210
25711	chr2	+	1798	7	NNC	ENSMUSG00000006418.18	novel	3001	8	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	230.875627894231	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTAAGCTGCAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	167345348	167358086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585_167356643_167356999
25712	chr10	+	2560	12	NNC	ENSMUSG00000019794.14	novel	1774	11	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	184.139185589112	5	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTCTTTGTTTCAATTT	NA	False	NA	NA	False	NA	NA	NA	7601767	7638908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7619790_7619931_7624539_7624662_7627307_7627414_7628507_7629322_7635460_7635588_7636498_7636634_7637006_7637134_7638553
25714	chr12	-	1819	7	NNC	ENSMUSG00000076432.14	novel	1970	7	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1272.61319077453	4	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	21467565	21440332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_21441323_21441366_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
25715	chr9	-	2248	11	FSM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	36	5	-18	-5	multi-exon	FALSE	canonical	3	179	junction_9	18.9747200242849	363	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGCAGCCTCTTGAGA	NA	False	NA	NA	False	NA	NA	NA	35122315	35115508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
25716	chr16	+	2461	10	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	105	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCGAGGAGCTCGAAGCCG	5492	False	NA	NA	False	NA	NA	NA	22064503	22084626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065615_22065937_22066016_22067187_22067248_22067801_22067886_22069615_22069730_22071355_22071534_22073148_22073327_22073737_22073867_22077613_22078004_22084487
25717	chr8	-	1793	7	NIC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-96	-250	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	471.464886167452	10	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTCCCTATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	85573659	85568728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85569474_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
25718	chr8	-	2692	6	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	26	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	226.423497013892	70	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGAAGAACGTCTCAGACT	9771	False	NA	NA	False	NA	NA	NA	123939473	123931011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_123932486_123932882_123933246_123933804_123934341_123934702_123934850_123935759_123935838_123939379
25719	chr10	+	691	2	FSM	ENSMUSG00000015889.9	ENSMUST00000217556.2	752	2	127	-66	127	9	multi-exon	FALSE	canonical	3	561	junction_1	0	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATTTTTGGTTTTTTGTT	8416	False	NA	NA	False	NA	NA	NA	93318459	93320746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93318929_93320524
25720	chr7	-	4682	4	NNC	ENSMUSG00000074283.6	novel	2932	4	NA	NA	-80	1956	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_1	2.49443825784929	33	13	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGTTGCACTATTAGGAG	NA	False	NA	NA	False	NA	NA	NA	23937065	23925040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_23929266_23933775_23933903_23936042_23936101_23936793
25721	chr11	-	2843	3	NIC	ENSMUSG00000020910.17	novel	1531	5	NA	NA	0	-1145	intron_retention	FALSE	canonical	3	79	junction_2	7.5	4	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCACACACATGAAATCA	NA	False	NA	NA	False	NA	NA	NA	66943411	66930239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_66932934_66942506_66942605_66943360
25722	chr11	-	1360	1	NIC	ENSMUSG00000020910.17	novel	1531	5	NA	NA	1114	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	10	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTACTCTTAAGTATTCT	NA	False	NA	NA	False	NA	NA	NA	66930239	66928879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_66928900_66930200
25723	chr11	-	2027	10	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	35	-2	intron_retention	FALSE	canonical	3	1167	junction_4	111.150659628283	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTGAGTGCAGATCTT	NA	False	NA	NA	False	NA	NA	NA	119190805	119179191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186960_119188630_119188704_119190653
25724	chrX	+	2916	8	NNC	ENSMUSG00000044150.13	novel	578	4	NA	NA	-261	9062	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	217.386329668014	11	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGATTAACCTTACCCAAA	NA	False	NA	NA	False	NA	NA	NA	158309422	158343947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158309518_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833
25725	chr6	-	4510	20	Antisense	novelGene_ENSMUSG00000029992.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACTCAGCGCTCGCTTCG	NA	False	NA	NA	False	NA	NA	NA	87067308	87019856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_87019987_87027022_87027193_87027900_87028010_87030731_87030840_87031580_87031708_87033124_87033184_87034610_87034746_87036360_87036422_87037500_87037581_87040784_87040891_87043603_87043769_87044664_87044759_87050360_87050462_87053238_87053358_87054062_87054221_87059452_87059568_87062231_87062359_87063282_87063451_87064295_87064461_87065095
25726	chr9	+	2742	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	18	-499	-11	499	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	615	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAAACAGTGCTCTAGAA	6424	False	NA	NA	False	NA	NA	NA	99457869	99467053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
25728	chr2	+	2287	9	NIC	ENSMUSG00000027323.11	novel	3368	10	NA	NA	25	853	intron_retention	FALSE	canonical	3	651	junction_5	87.2396125621842	862	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAAACAGATTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	118943322	118966542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964990_118965529
25729	chr4	+	2874	27	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	3	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	189.221231779663	1	81	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAATGTATTCCTACCAG	NA	False	NA	NA	False	NA	NA	NA	148642914	148666832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148647931_148647961_148648043_148648154_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
25730	chr11	-	3491	6	NNC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	-37	-13	intron_retention	FALSE	canonical	3	23	junction_5	86.1682075942166	9	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTAACCTGACTCTGCG	NA	False	NA	NA	False	NA	NA	NA	61385051	61379650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61384760_61384905
25731	chr10	+	2213	9	NNC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-18	5	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_8	101.226772026969	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTGGCTCAAGTGA	NA	False	NA	NA	False	NA	NA	NA	44144392	44240292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911_44238932_44239036
25733	chr6	+	2400	17	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	21	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	271.152517045297	1	79	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATACATATTACCACTCC	5458	False	NA	NA	False	NA	NA	NA	125108892	125121694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963_125121356_125121509
25734	chrX	-	1892	10	ISM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	3136	1456	3078	-1456	3prime_fragment	FALSE	canonical	3	1008	junction_2	71.2004646953902	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGACACCCAGTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	93253179	93233768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141
25735	chr4	-	1710	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	781.26932616096	257	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098056
25736	chr12	-	1648	1	FSM	ENSMUSG00000066632.4	ENSMUST00000085735.4	1255	1	-73	-320	-73	320	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACTGTTCTTGACTCAG	NA	False	NA	NA	False	NA	NA	NA	10950313	10948665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_10948700_10950300
25737	chr14	-	3896	1	Genic_Genomic	ENSMUSG00000115691.2	novel	NA	NA	NA	NA	12589	2161	mono-exon	FALSE	NA	NA	NA	NA	NA	54	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGTCTTATTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	32027353	32023457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_32023500_32027400
25738	chr3	+	3622	19	NNC	ENSMUSG00000027550.15	novel	5638	19	NA	NA	14	-86	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	20.0292995260986	2	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTATAATAAAGCATTAAT	NA	False	NA	NA	False	NA	NA	NA	14598897	14631077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612738_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
25739	chrX	-	3748	12	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	10	10	intron_retention	FALSE	canonical	0	0	junction_1	398.793055138184	1	127	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTGTGAGATGAGGG	NA	False	NA	NA	False	NA	NA	NA	95000509	94978930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979229_94980967_94981126_94983904_94984555_94990016_94990165_94990472_94991055_94991375_94991462_94993942_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
25740	chr10	-	1986	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	408	-178	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	917.684338677819	3	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127357825	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354117_127354250_127354339_127354440_127354660_127354822_127354985_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127357768
25741	chr4	+	2304	8	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	2019	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	267.57825481339	2	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTGTGTTCGCTTTCTT	1951	False	NA	NA	False	NA	NA	NA	124939043	124949173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948989
25742	chr19	+	1623	5	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-41	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2538.25268393436	8	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATACTTTACTGTTTGTC	4134	False	NA	NA	False	NA	NA	NA	41900435	41907093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044_41906409_41906480
25743	chr6	+	3590	13	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	198	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCACTCTCCGTTTCCATG	526	False	NA	72	True	NA	NA	NA	122294705	122313911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295620_122296301_122296505_122296854_122297012_122297170_122297283_122297896_122298012_122298829_122299047_122299297_122299429_122299964_122300777_122302418_122302910_122310248_122310400_122311028_122311112_122311933_122312042_122313815
25744	chr15	-	1587	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	29	0	-29	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	3	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTCAAAGTAAAAGCTTTAA	158	False	NA	NA	False	NA	NA	NA	98832319	98829334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
25745	chr18	+	2005	11	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-173	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	254.973351548745	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGGTAGTCTGTTTGG	627	False	NA	NA	False	NA	NA	NA	84952733	84999588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980764_84980831_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
25746	chr9	-	1627	10	NIC	ENSMUSG00000062270.15	novel	1540	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	2189.3605357628	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTGTGTGGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	89996751	89973723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89996588
25747	chr7	-	3961	18	NNC	ENSMUSG00000001248.16	novel	3722	18	NA	NA	-24	-4	intron_retention	FALSE	canonical	0	0	junction_15	98.9613884370267	103	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTATGGCTTGTACCTGT	848	False	NA	NA	False	NA	NA	NA	30855345	30829555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30854291_30854572_30855260
25749	chr2	+	2109	17	NNC	ENSMUSG00000027012.16	novel	2585	17	NA	NA	-23	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	197.946015367827	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATGCCATGGATAATC	NA	False	NA	NA	False	NA	NA	NA	71042126	71093197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71091704_71091811_71092991
25750	chr2	+	2435	4	ISM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	47	712	6	-1	intron_retention	FALSE	canonical	3	360	junction_1	68.8444300982698	48	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAGTCTTTCAGTGGAC	NA	False	NA	NA	False	NA	NA	NA	144112866	144122435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913
25751	chr10	-	4197	32	NNC	ENSMUSG00000035673.11	novel	3903	32	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	42.6327882104037	1	121	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGCTACTTCAGCCTC	NA	False	NA	NA	False	NA	NA	NA	79938551	79893252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894564_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896429_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904253_79904509_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443
25752	chr9	-	3331	10	NIC	ENSMUSG00000031935.10	novel	3964	12	NA	NA	-5	130	intron_retention	FALSE	canonical	2	4	junction_9	56.7446087067657	3	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAATCTCCCCAAGTA	NA	False	NA	NA	False	NA	NA	NA	15191204	15173172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15190845
25753	chrX	+	2288	2	FSM	ENSMUSG00000045427.14	ENSMUST00000113203.2	2315	2	21	6	-12	0	multi-exon	FALSE	canonical	2	6	junction_1	0	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	NA	NA	NA	133501994	133507803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133505603
25754	chr7	+	2818	8	NIC	ENSMUSG00000023118.16	novel	4781	23	NA	NA	-8981	-3199	intron_retention	FALSE	canonical	3	130	junction_2	13.0477928386062	1	109	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACCCTCGGTGCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	18770637	18780789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779639_18779772
25755	chr7	+	4899	6	NIC	ENSMUSG00000062031.14	novel	3145	13	NA	NA	14	0	intron_retention	FALSE	canonical	3	42	junction_1	9.05538513813742	18	111	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGAGTGTGTGATGGA	NA	False	NA	NA	False	NA	NA	NA	140521507	140527571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140521557_140522197_140524678_140524863_140525676_140525792_140525927_140526019_140526116_140526243
25756	chr11	+	2589	23	NIC	ENSMUSG00000059439.16	novel	3810	28	NA	NA	-3	-19047	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	32.5709651161129	2	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	3475	False	NA	NA	False	NA	NA	NA	85243989	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_85244060_85245419_85245506_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
25757	chr3	-	3940	6	ISM	ENSMUSG00000004896.17	ENSMUST00000159091.9	3197	7	-4	1068	-4	-6	intron_retention	FALSE	canonical	3	63	junction_5	23.591523901605	11	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCTATAAATACCATGTA	9456	False	NA	NA	False	NA	NA	NA	87837438	87830975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230
25759	chr3	-	3793	16	NNC	ENSMUSG00000027889.18	novel	3368	18	NA	NA	11	-7	intron_retention	FALSE	canonical	0	0	junction_13	82.8459346551711	1	78	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATTAATGAGGCATGTG	NA	False	NA	NA	False	NA	NA	NA	107992700	107981386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107982438_107982564_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107987090_107987378_107987491_107987582_107987645_107987959_107988091_107988316_107988448_107992562
25760	chr2	+	3277	20	FSM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	-8	2	-8	-2	multi-exon	FALSE	canonical	3	96	junction_10	16.137738156191	163	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGGACTCAGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	28730462	28795581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28730873_28734849_28735107_28735209_28735286_28736005_28736050_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765701_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
25761	chr5	+	2210	4	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-7	-5	intron_retention	FALSE	canonical	3	14010	junction_1	1122.39396925599	4	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTTCTTTTGGTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	121342601	121347023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121343919_121344729_121345259_121346453_121346639_121346844
25762	chr6	-	2905	22	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	150.09235252242	2	66	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3563	False	NA	NA	False	NA	NA	NA	125168496	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151220_125161382_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
25763	chr10	+	2441	13	FSM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	52	339	-40	-339	multi-exon	FALSE	canonical	3	459	junction_3	51.2387521532504	605	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCCTGGTCCTCTCTCT	5502	False	NA	NA	False	NA	NA	NA	80905920	80918054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
25764	chrX	+	2639	6	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	0	-3	intron_retention	FALSE	canonical	3	243	junction_3	8.17312669668102	10	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATACCTCTGTCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	73326355	73333751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73332789_73332904
25765	chr7	+	2462	9	NNC	ENSMUSG00000058454.16	novel	2556	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	179.604382950417	261	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	143383984	143402147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_143384003_143386528_143386658_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
25766	chr19	+	2204	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	-211	4042	-28	11	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	1388	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCTACACAGTAAACAGTC	NA	False	NA	NA	False	NA	NA	NA	10872566	10882881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
25767	chr6	-	2281	3	ISM	ENSMUSG00000055850.13	ENSMUST00000069595.13	1191	4	0	0	0	0	intron_retention	FALSE	canonical	3	875	junction_2	49.5	34	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	NA	NA	NA	72339376	72336696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_72337626_72337857_72337933_72338099
25768	chr14	+	3413	11	NNC	ENSMUSG00000056234.16	novel	3343	10	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	248.435182693595	1	119	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTTGTGTTTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	31887752	31901205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31887780_31888153_31888228_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
25769	chr12	-	2409	27	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	12	-2334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	575.970166880277	1	74	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299152	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269517_13269555_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275494_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
25770	chr10	+	2461	5	NNC	ENSMUSG00000061759.16	novel	2429	5	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	96.0234346396753	634	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGAGCTCTCACTGGTT	NA	False	NA	NA	False	NA	NA	NA	4382469	4405133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400853_4403471
25771	chr14	-	4552	11	NNC	ENSMUSG00000063410.9	novel	2676	11	NA	NA	-2522	2154	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	93.8301124373194	275	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTGTCTCGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	121599802	121521600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_121524777_121529391_121529529_121530832_121530902_121531601_121531726_121532066_121532213_121534546_121534733_121539597_121539756_121540158_121540268_121545426_121545484_121574833_121575065_121599643
25772	chr11	+	2013	5	Antisense	novelGene_ENSMUSG00000042709.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGTAAATAGAAAACAGGC	NA	False	NA	NA	False	NA	NA	NA	60291621	60299079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_60292365_60294662_60294778_60295204_60295315_60296597_60296683_60298119
25774	chr5	-	2686	10	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	-25	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	602.193541752479	1	106	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATCTTGTTCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	92231603	92201579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92211026_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
25775	chr6	-	3513	13	NNC	ENSMUSG00000040669.15	novel	3683	13	NA	NA	19	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	413.390545435615	1	172	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACGCTGCTCTGTCCT	9615	False	NA	NA	False	NA	NA	NA	122313955	122294828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310393_122311024_122311110_122311940_122312043_122313816
25776	chrX	-	2187	9	NIC	ENSMUSG00000031371.15	novel	1380	10	NA	NA	12	-1	intron_retention	FALSE	canonical	3	498	junction_5	41.9545885452354	91	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGACGTTGCCTTCGGACT	NA	False	NA	NA	False	NA	NA	NA	72502638	72480923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72481172_72489415_72489531_72490533_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
25779	chr4	-	3346	1	ISM	ENSMUSG00000073910.11	ENSMUST00000102975.10	6030	4	205054	11	205054	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	41	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAAACCATCTTCTAGT	30	False	NA	NA	False	NA	NA	NA	34952430	34949084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_34949100_34952400
25780	chr5	-	1884	1	ISM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	26366	1391	8273	-1391	mono-exon	FALSE	NA	NA	NA	NA	NA	7	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTGGGTTTGGGCGTTG	3711	False	NA	NA	False	NA	NA	NA	150562711	150560827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_150560800_150562700
25782	chr17	-	2163	8	NNC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	835.883914408781	101	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGAATAAGTGGTTGGTA	NA	False	NA	NA	False	NA	NA	NA	80514732	80507637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512684_80512868_80513276_80513458_80514603
25783	chr16	-	889	7	NNC	ENSMUSG00000022771.18	novel	1395	17	NA	NA	-137	2	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_6	245.671019861928	1	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGTCCAGTTTGAGCCC	NA	False	NA	NA	False	NA	NA	NA	16909518	16906512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909295
25785	chr19	-	1937	13	ISM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	4342	3	4342	-3	3prime_fragment	FALSE	canonical	3	2912	junction_9	218.166348357293	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTACGGTCTCCAGTGAC	8105	False	NA	NA	False	NA	NA	NA	7012993	6998072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863
25786	chrX	-	1794	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	96	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256257	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93232484_93234275_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
25788	chr1	-	3441	5	FSM	ENSMUSG00000026374.15	ENSMUST00000188512.7	656	5	-1208	-1577	42	338	multi-exon	FALSE	canonical	3	922	junction_2	75.9584590417684	8	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGACC	NA	False	NA	NA	False	NA	NA	NA	118238924	118227041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502
25789	chr2	+	3801	8	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	5	-1304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5.34140545595426	21	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCACCCCCCCATTCCCC	2728	False	NA	NA	False	NA	NA	NA	30023788	30035786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30033429_30033636
25792	chr13	+	2566	11	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	-3	93	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	71.7933840963079	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGGTTTTTGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	84370427	84444082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_84370554_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
25793	chr8	+	4222	8	NNC	ENSMUSG00000011306.8	novel	2963	8	NA	NA	0	969	intron_retention	FALSE	non_canonical	0	0	junction_5	213.464426133466	2	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAGCAACTTGTGGAAGA	2393	False	NA	NA	False	NA	NA	NA	70495698	70520530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512410_70513310_70517486_70519702_70520070
25794	chrX	+	3311	12	Antisense	novelGene_ENSMUSG00000031232.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	113	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGAACCGAGCCCTTGCC	NA	False	NA	NA	False	NA	NA	NA	105011694	105055439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_105012837_105013670_105014720_105015031_105015086_105017790_105017884_105023012_105023087_105027315_105027380_105027971_105028062_105032576_105032721_105032995_105033137_105036003_105036121_105040426_105040598_105055267
25795	chr11	-	2677	11	Antisense	novelGene_ENSMUSG00000034708.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	64	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGGTCAGCTCCAGGACT	NA	False	NA	NA	False	NA	NA	NA	102327529	102321333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_102321364_102323757_102323920_102324028_102324172_102324305_102324869_102324964_102325101_102325222_102325336_102325528_102325987_102326073_102326316_102326532_102326767_102326847_102327073_102327158
25796	chr5	-	2010	5	NIC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	0	49	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	130.556501178608	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTTTTTATAATC	5703	False	NA	NA	False	NA	NA	NA	150588811	150566415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_150566781_150570924_150571014_150574079_150574205_150584743_150585979_150588615
25797	chr11	+	3343	15	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	152262	3	1101	-3	3prime_fragment	FALSE	canonical	3	59	junction_2	18.7976605144451	172	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGTTTTATTTTTATTG	7577	False	NA	NA	False	NA	NA	NA	23409177	23439741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_23409229_23410561_23410710_23414216_23414852_23417145_23417304_23418804_23418884_23420288_23420416_23421481_23421590_23422949_23423055_23423169_23423295_23424265_23424390_23434101_23434182_23436817_23436959_23437078_23437223_23438208_23438369_23438583
25798	chr5	-	2030	15	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	25525	45622	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCCCAATGACTATTACAA	NA	False	NA	NA	False	NA	NA	NA	108254871	108208609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108226729_108226839_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235267_108235817_108235956_108239926_108240028_108241954_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252182_108252289_108252396_108254452
25799	chr15	-	1296	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1369	215	1242	-215	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGTTGGTGTGGATTCTG	1400	False	NA	NA	False	NA	NA	NA	98831077	98829520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
25800	chr17	+	5116	31	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	47286	5	-1587	-5	3prime_fragment	FALSE	canonical	3	137	junction_1	29.9010404872844	139	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCATCCACAGGGTCATAC	NA	False	NA	NA	False	NA	NA	NA	27323563	27341192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_27323625_27324467_27324591_27325179_27325381_27326203_27326456_27326583_27326710_27326790_27326917_27329453_27329575_27329804_27329996_27330171_27330321_27330437_27330547_27330638_27330730_27330830_27331001_27332464_27332640_27332717_27332900_27333053_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
25801	chr10	+	1840	13	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	47	9	intron_retention	FALSE	canonical	3	604	junction_8	36.3893871891242	135	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTCAAAATATTCTCATCT	9263	False	NA	NA	False	NA	NA	NA	127102302	127117828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113808_127113988_127114092_127114185_127114278_127117269
25803	chr13	+	870	5	NIC	ENSMUSG00000021361.8	novel	914	6	NA	NA	-24	-9	combination_of_known_splicesites	FALSE	canonical	3	108	junction_1	251.069089097005	25	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACACTTCTCTGGTGTCGT	NA	False	NA	NA	False	NA	NA	NA	41169743	41176053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_41169875_41171181_41171259_41171831_41171934_41174594_41174683_41175581
25804	chr2	-	2920	3	NIC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	2303	-746	intron_retention	FALSE	canonical	3	980	junction_1	41.5	3	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGCTGTTCTTACTATGA	1253	False	NA	NA	False	NA	NA	NA	3496852	3490758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_3492148_3492557_3492771_3495534
25805	chr17	+	2879	8	FSM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	17	2	17	-1	multi-exon	FALSE	canonical	3	116	junction_6	36.6951033823983	300	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCGGGCCTCTCATTCTC	309	False	NA	34	True	NA	NA	NA	34138322	34148264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
25806	chr17	-	2402	17	NNC	ENSMUSG00000024039.16	novel	6226	17	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.9134812224099	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGTCGTGTCGACCTT	1901	False	NA	NA	False	NA	NA	NA	31856183	31831617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31831916_31831957_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
25807	chr2	+	1925	14	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-441	intron_retention	FALSE	canonical	3	800	junction_1	80.685157709186	2211	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164675725	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675771_164675949_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
25808	chr9	+	2400	10	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	239.830032407212	4	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	77824687	77891801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77890638_77890701_77890772_77891047
25809	chr7	+	2048	11	NIC	ENSMUSG00000030523.19	novel	2575	11	NA	NA	31	1	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	2150	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTGAGTTTTCAGACT	NA	False	NA	NA	False	NA	NA	NA	63835159	63861176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
25811	chr9	-	2030	7	Antisense	novelGene_ENSMUSG00000054836.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	686	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCGAGCGCGAGAAAGCGC	NA	False	NA	NA	False	NA	NA	NA	110151164	110134291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_110134415_110139156_110139240_110141634_110141705_110143039_110143161_110144816_110145019_110148635_110148781_110149878
25813	chr1	-	3120	5	ISM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	22809	220	-5101	-6	intron_retention	FALSE	canonical	3	1001	junction_4	99.8423757730153	3	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTATGCTTTGTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	177601268	177590747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637
25815	chr14	+	2302	15	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_13	113.326442867767	3	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGGAAATGTCTTTCT	2	True	NA	NA	False	NA	NA	NA	25842606	25887213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884615_25884689_25886434
25816	chr4	+	3743	17	NIC	ENSMUSG00000006445.4	novel	969	4	NA	NA	56	-28	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	35.477050240261	3	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAAGTTGCAGATGGTT	NA	False	NA	NA	False	NA	NA	NA	141029773	141056667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_141029827_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
25817	chr2	-	3825	8	FSM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	3	2	3	-2	multi-exon	FALSE	canonical	3	173	junction_3	12.5746749055231	238	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGATGAGAGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	157870350	157823724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
25818	chr13	-	3663	13	NNC	ENSMUSG00000021710.12	novel	2486	12	NA	NA	-36	1654	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	87.7763493203038	3	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATTCTTTGCAAAGG	NA	False	NA	NA	False	NA	NA	NA	104246158	104170064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104171554_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
25819	chr2	+	2829	12	NNC	ENSMUSG00000017721.16	novel	2562	12	NA	NA	-4	-28	intron_retention	FALSE	non_canonical	0	0	junction_11	52.2968323867321	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATGTAATAAAGTGGCAG	5134	False	NA	NA	False	NA	NA	NA	164339461	164350193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164349527_164349750
25820	chr5	+	2464	15	NIC	ENSMUSG00000056310.15	novel	3044	16	NA	NA	52	-406	combination_of_known_splicesites	FALSE	canonical	2	25	junction_1	75.7162061751051	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	4980	False	NA	NA	False	NA	NA	NA	130285927	130369998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_130286035_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
25821	chr9	+	2177	16	NIC	ENSMUSG00000032872.17	novel	2644	16	NA	NA	36	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_14	228.429556367433	708	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTGTGGTGGACGTGTG	NA	False	NA	NA	False	NA	NA	NA	86904102	86959434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948739_86948867_86958880
25822	chr8	+	2931	16	NIC	ENSMUSG00000031985.10	novel	2984	16	NA	NA	-19	-3	combination_of_known_junctions	FALSE	canonical	2	14	junction_3	158.602984419167	631	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATACCCAATGGTCTTATT	5140	False	NA	NA	False	NA	NA	NA	125589791	125616793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_125590052_125597514_125597698_125600071_125600219_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
25823	chr15	+	3046	5	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	1	-6	intron_retention	FALSE	canonical	3	367	junction_1	16.4392822227736	8	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGAACCCCTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	102426874	102432103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427038_102427556_102427727_102428909_102430232_102430415_102430987_102431283
25825	chr11	+	1517	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-12	multi-exon	FALSE	canonical	0	0	junction_2	980	5	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGATTTACA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120654051_120654114
25826	chrX	-	2878	10	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	459	-11	intron_retention	FALSE	non_canonical	0	0	junction_9	462.019239618631	2	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGAAAATTGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100128499	100122838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126253_100126396_100126575_100126753_100127881_100128425
25827	chr9	-	2740	1	ISM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	56353	232	56104	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGCCTCTGACTGTC	9730	False	NA	NA	False	NA	NA	NA	108084804	108082064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_108082100_108084800
25829	chr8	-	2628	6	NIC	ENSMUSG00000025591.7	novel	3150	7	NA	NA	0	-2013	intron_retention	FALSE	canonical	3	740	junction_4	84.295670114188	51	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTTAGTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	66939182	66928994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66936823_66939063
25830	chr7	-	3073	8	NIC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	-10	-6	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	9.2493794607078	82	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCACTAATTTGTCATTG	NA	False	NA	NA	False	NA	NA	NA	4448658	4428671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4446735_4446771_4447201_4447321_4448445
25831	chr15	+	5936	23	NNC	ENSMUSG00000022272.18	novel	1030	7	NA	NA	49	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	283.645294148452	1	273	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGTCTGACAATAAAAGA	39	False	NA	NA	False	NA	NA	NA	25774121	25813726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_25774395_25776106_25776229_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795860_25797284_25797341_25799496_25799640_25800130_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810632_25812206
25832	chr11	+	3641	19	NNC	ENSMUSG00000038290.16	novel	5848	19	NA	NA	82	-562	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	34.764685146472	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCCAACCCGTCACACC	NA	False	NA	NA	False	NA	NA	NA	74816730	75054712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74816830_74821381_74821575_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
25833	chr7	-	2365	3	FSM	ENSMUSG00000090862.4	ENSMUST00000205548.2	2363	3	0	-2	0	0	multi-exon	FALSE	canonical	3	9102	junction_2	1081.5	62	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	115933370	115930744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_115933010_115933134_115933184_115933319
25834	chr11	-	2429	9	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	5	-9	intron_retention	FALSE	canonical	3	48	junction_5	130.611482554177	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAAGCACTCTGTAGGCT	NA	False	NA	NA	False	NA	NA	NA	120505346	120500921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156
25835	chr3	-	2250	16	NIC	ENSMUSG00000042520.17	novel	2681	21	NA	NA	-27	1319	combination_of_known_junctions	FALSE	canonical	0	0	junction_15	279.380552890378	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGCAAAAACTGTCTCAA	3367	False	NA	NA	False	NA	NA	NA	89959962	89926234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959890
25836	chr11	-	3325	14	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9008	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	614.263584692508	1	125	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACTCTTCAGTTATCTG	416	False	NA	NA	False	NA	NA	NA	106615228	106545054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106570374_106570438_106573705_106573775_106574414_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606191_106615168
25837	chr10	-	3851	5	NIC	ENSMUSG00000000901.18	novel	2288	8	NA	NA	16	0	intron_retention	FALSE	canonical	3	194	junction_2	17.5926120857592	3	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5099	False	NA	NA	False	NA	NA	NA	75768293	75759055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75759950_75761253_75762462_75762581_75762824_75762962_75764344_75768167
25838	chr2	-	2451	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	7	0	-7	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	469	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCAGCCTGTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	164285106	164266173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
25839	chr15	-	1957	10	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	1	241	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1762.98033293653	6	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCACCGTTCCCCAGTATAA	378	False	NA	NA	False	NA	NA	NA	36609216	36598303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36598372_36598445_36598624_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
25840	chr3	-	3952	1	ISM	ENSMUSG00000038766.17	ENSMUST00000107209.8	8357	9	31986	6	6175	1	mono-exon	FALSE	NA	NA	NA	NA	NA	76	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATGTCAGTATTGTTG	NA	False	NA	NA	False	NA	NA	NA	95093034	95089082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95089100_95093000
25841	chr16	-	1158	6	NNC	ENSMUSG00000071533.12	novel	938	5	NA	NA	0	138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1033.23093256058	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGCATTTCGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	55850039	55837024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55837093_55837209_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
25843	chr11	+	1815	12	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	21	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	824.039756723641	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGATCTTGTGCGTGGAG	NA	False	NA	NA	False	NA	NA	NA	107370330	107388993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349_107388404_107388465
25844	chr4	-	3529	9	FSM	ENSMUSG00000040296.16	ENSMUST00000137903.8	3533	9	5	-1	5	1	multi-exon	FALSE	canonical	3	61	junction_4	6.68487097856047	92	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATATGGGTGTTTTTTT	-4	True	NA	NA	False	NA	NA	NA	40220595	40203775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398
25845	chr2	-	3802	8	FSM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	30	-2	30	2	multi-exon	FALSE	canonical	3	173	junction_3	12.5746749055231	2	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGAGATTTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	157870323	157823720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
25848	chr6	-	3381	11	NNC	ENSMUSG00000029790.17	novel	3447	11	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	26.0624250598443	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	-14	True	NA	NA	False	NA	NA	NA	30693721	30653455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30655850_30656477_30656694_30657335_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
25849	chr3	+	3393	16	NNC	ENSMUSG00000025758.11	novel	3479	16	NA	NA	0	-18	intron_retention	FALSE	canonical	2	5	junction_5	92.9457189259767	235	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGTAAGTTTTCCTTAAC	7808	False	NA	NA	False	NA	NA	NA	40754476	40771299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442_40760356_40760965_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
25850	chr11	+	2036	16	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-1	-814	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	291.232888863115	19	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTAAATGGTTGGATC	NA	False	NA	NA	False	NA	NA	NA	3913973	3929190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826_3928918_3928979
25851	chr4	-	2801	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	176	0	176	0	multi-exon	FALSE	canonical	3	844	junction_1	0	10	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTTATATTG	145	False	NA	NA	False	NA	NA	NA	11007500	10988661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_10991355_11007392
25852	chr17	-	1937	13	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	259	-6	combination_of_known_junctions	FALSE	canonical	3	1453	junction_5	288.303791839249	1	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCATAGCTCTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	45904301	45896134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257
25853	chr5	+	1351	8	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1813	3456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCATCGTCACTCTTT	665	False	NA	NA	False	NA	NA	NA	138162851	138166364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165027_138165305_138165700_138165810_138165896_138166101_138166235_138166319
25856	chr11	+	2809	12	FSM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	-136	6	-136	0	multi-exon	FALSE	canonical	3	99	junction_6	22.5527847321246	295	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCGTGTGACTCCTTT	5303	False	NA	NA	False	NA	NA	NA	75521677	75539691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
25857	chr11	+	1785	1	NIC	ENSMUSG00000039329.9	novel	1745	3	NA	NA	378	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	24	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	NA	False	NA	NA	NA	121037360	121039145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_121037400_121039100
25858	chr16	+	2048	9	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	64	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCGACGCCACACTTTTG	5502	False	NA	NA	False	NA	NA	NA	22064513	22084609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065615_22065937_22066016_22067187_22067248_22067801_22067886_22069615_22069730_22071355_22071545_22073156_22073327_22073737_22073884_22084503
25859	chr6	+	2356	4	FSM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	-279	6	-279	-6	multi-exon	FALSE	canonical	3	121	junction_1	5.71547606649408	767	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAATGTTATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	135042369	135061701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_135042774_135055543_135056483_135060440_135060497_135060744
25860	chr1	-	2418	8	Antisense	novelGene_ENSMUSG00000026456.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTGCGTCCCGCTCCGG	5228	False	NA	NA	False	NA	NA	NA	134339465	134333771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_134334200_134334335_134334409_134334782_134334889_134335309_134335440_134335552_134336228_134337339_134337422_134338227_134338329_134338642
25861	chr4	+	3838	16	NIC	ENSMUSG00000006445.4	novel	3913	17	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	36.839230297183	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATTTTGGCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	141028550	141056688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_141028746_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
25862	chr5	+	1907	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1399.75140650045	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	759	False	NA	NA	False	NA	NA	NA	77099626	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099679_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114274_77114610
25864	chr15	-	4050	25	FSM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	-16	13	-16	-13	multi-exon	FALSE	canonical	3	89	junction_19	18.7071269098764	80	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATTCTGCAACATCTTT	NA	False	NA	NA	False	NA	NA	NA	85016181	84948902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_84949307_84950419_84950531_84951937_84952008_84953845_84953998_84954980_84955136_84955782_84955940_84970293_84970390_84973792_84973947_84975072_84975219_84976143_84976286_84980846_84980954_84981705_84981823_84982096_84982235_84991118_84991266_84994852_84995033_84996887_84997074_84998879_84999088_85000039_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
25865	chr16	+	3348	9	Antisense	novelGene_ENSMUSG00000004462.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCGTAGCTTCCAGACTG	NA	False	NA	NA	False	NA	NA	NA	22631968	22676298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22632706_22637129_22637278_22640830_22641330_22641452_22641640_22642116_22642198_22644515_22644883_22652627_22652786_22660480_22660855_22675501
25866	chr6	-	2888	10	Antisense	novelGene_ENSMUSG00000033706.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGCACGCCTCTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	85423412	85408985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_85409081_85415087_85415198_85415730_85415875_85416636_85416756_85417084_85417155_85418538_85419198_85419578_85419741_85421223_85421318_85421897_85421969_85422048
25867	chrX	-	1573	7	ISM	ENSMUSG00000031370.13	ENSMUST00000112289.9	2735	11	-65	13141	7	355	5prime_fragment	FALSE	canonical	3	159	junction_1	270.158441166167	28	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAACCCAAACCAAC	NA	False	NA	NA	False	NA	NA	NA	162741650	162731579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
25868	chr3	+	2426	1	NIC	ENSMUSG00000038374.11	novel	2608	6	NA	NA	0	465	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	18	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCCCTCTGAAGATAGCT	8642	False	NA	-70	True	NA	NA	NA	96537255	96539681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_96537300_96539700
25869	chr18	+	1822	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	10	1033	4	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	1735	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	NA	False	NA	NA	NA	46730780	46742245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
25870	chr10	-	2364	9	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	437.034252090154	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAGTTTGTAGTTTAAA	5266	False	NA	NA	False	NA	NA	NA	62322516	62291051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62291414_62291506_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
25871	chr11	+	3627	7	NIC	ENSMUSG00000049957.15	novel	2778	6	NA	NA	10	-3	intron_retention	FALSE	canonical	0	0	junction_2	60.7410258575061	6	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATCAATGAGAACATTCT	250	False	NA	NA	False	NA	NA	NA	120348982	120355180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120349105_120349437_120349572_120349781_120350682_120350872_120351091_120352541_120352625_120352831_120352912_120353090
25872	chr9	+	1902	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	-119	6	-119	-2	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	3478	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGACTCTGAGTGGCTTT	249	False	NA	NA	False	NA	NA	NA	45281363	45307451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
25873	chr18	+	2705	20	NNC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	24	18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	217.728311729393	2	74	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCATAATGCCTTTTTC	15	False	NA	NA	False	NA	NA	NA	3383280	3435403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3419363_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
25874	chr16	-	3053	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24720	146	-9965	-146	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	1	143	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCGTCAAGGTGTGGGG	NA	False	NA	NA	False	NA	NA	NA	22230544	22200211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
25875	chr13	-	4029	6	NNC	ENSMUSG00000094870.9	novel	3067	7	NA	NA	414	1	intron_retention	FALSE	canonical	2	2	junction_1	62.143060755003	1	55	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120251823	120226721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_120229551_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684
25876	chr19	-	3050	22	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	99	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTCGCGCGCTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	38956721	38919400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38919519_38919833_38919955_38923855_38923979_38926847_38926911_38928917_38928950_38929038_38929104_38930895_38930935_38932155_38932380_38933832_38934020_38935160_38935311_38938629_38938828_38940278_38940373_38941983_38942147_38943132_38943278_38943368_38943490_38945471_38945569_38945647_38945762_38947487_38947604_38948111_38948273_38953040_38953136_38953848_38953927_38956175
25877	chr11	+	1961	4	Antisense	novelGene_ENSMUSG00000020922.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGGCTACCACCTCGCCC	3154	False	NA	NA	False	NA	NA	NA	102053335	102075935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102054992_102056183_102056313_102057912_102058023_102075869
25878	chr19	-	2690	2	NNC	ENSMUSG00000092274.4	novel	3004	2	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGCTTCTTAGAATTGT	10001	False	NA	NA	False	NA	NA	NA	5895506	5892339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5894752_5895228
25879	chr11	+	1775	10	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2289.23214254674	27	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACTTCATCTGGCAA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388562_55390935
25881	chr9	-	2775	19	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGCCACGCGGTTT	5466	False	NA	NA	False	NA	NA	NA	21316207	21279306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279406_21299011_21299096_21299820_21300046_21303589_21303737_21305004_21305102_21305494_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311323_21314442_21314798_21315355_21315486_21315989
25882	chr2	-	2748	17	NIC	ENSMUSG00000027620.17	novel	2810	17	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	198	junction_12	678.943661943869	1	97	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	156022117	155989158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009509_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
25883	chr8	+	3549	26	NNC	ENSMUSG00000034330.11	novel	4298	33	NA	NA	75408	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	39.3049615188719	6	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	NA	False	NA	NA	NA	118300437	118361881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_118300566_118300655_118300729_118304561_118304664_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
25884	chr3	-	1748	1	FSM	ENSMUSG00000069083.5	ENSMUST00000091289.5	1590	1	102	-260	102	260	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGATTTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	25266667	25264919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_25264900_25266700
25885	chr8	+	4056	5	NIC	ENSMUSG00000079038.4	novel	2002	6	NA	NA	6	2327	combination_of_known_splicesites	FALSE	canonical	2	14	junction_4	0.82915619758885	36	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTACTTACCAGAGATGC	7167	False	NA	NA	False	NA	NA	NA	69723751	69758354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_69723844_69743913_69743975_69752904_69753032_69753409_69753474_69754642
25886	chr17	+	2274	13	NNC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-908	7131	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	50	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATCTGCGCGCTTGGCCA	NA	False	NA	NA	False	NA	NA	NA	45896137	45906434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45896708_45897018_45897232_45898153_45898597_45899214_45899312_45899926_45900003_45900132_45900229_45900336_45900475_45900606_45900746_45900847_45901054_45901184_45901262_45903101_45903188_45904256_45904363_45906407
25887	chr2	-	1815	15	NIC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-8	-4	intron_retention	FALSE	canonical	3	278	junction_14	33.6361837482027	2036	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTTGGGTTTCTCTAGC	NA	False	NA	NA	False	NA	NA	NA	164699561	164681441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
25888	chr15	-	3830	8	Antisense	novelGene_ENSMUSG00000036167.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTCCGGCGCGCGCGGT	8841	False	NA	NA	False	NA	NA	NA	93389783	93296238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_93296340_93308569_93308665_93318164_93318372_93321894_93321955_93339379_93339593_93353327_93353408_93362981_93363125_93386852
25889	chr6	-	2933	13	NNC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.6903368879471	4	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	112673619	112603375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112604148_112604818_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
25890	chr18	+	2547	13	Antisense	novelGene_ENSMUSG00000024613.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGCTGAAGAGGTCACC	NA	False	NA	NA	False	NA	NA	NA	60946899	60964946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_60947261_60947594_60947643_60948031_60948127_60949075_60949603_60951102_60951283_60951933_60952020_60952459_60952720_60955818_60956062_60961435_60961632_60961727_60961907_60962084_60962187_60964583_60964752_60964844
25891	chr18	-	2716	9	NIC	ENSMUSG00000038425.19	novel	2736	10	NA	NA	16	-1	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	108.347747438514	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACTAGGCTCTCACTGT	NA	False	NA	NA	False	NA	NA	NA	70663323	70641758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70662821
25892	chr5	+	2411	17	Antisense	novelGene_ENSMUSG00000029472.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCCACAGTAGCGGGGG	NA	False	NA	NA	False	NA	NA	NA	122925781	122959343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_122926070_122926357_122926532_122929681_122929791_122929880_122929997_122931498_122931622_122932479_122932554_122937400_122937542_122938516_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945464_122952610_122952679_122955883_122956066_122956914_122957027_122957670_122957753_122959044
25893	chr18	+	2207	12	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26637	-2804	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	361.067219766739	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAATCAGTTGGTATTTCT	6448	False	NA	-74	True	NA	NA	NA	77126266	77238009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77217720_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756
25894	chr4	+	4315	15	ISM	ENSMUSG00000028412.18	ENSMUST00000107651.9	4382	16	40796	18	40783	-18	3prime_fragment	FALSE	canonical	3	334	junction_11	26.8058019915123	171	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTGTTTAGAAATTATG	NA	False	NA	NA	False	NA	NA	NA	53481466	53567800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_53481554_53491387_53491531_53517544_53517682_53528654_53528749_53536322_53536493_53538389_53538480_53541300_53541441_53542364_53542552_53543541_53543708_53544540_53544698_53545684_53545769_53553485_53553624_53560914_53561152_53563140_53563222_53565396
25895	chr6	+	3501	9	FSM	ENSMUSG00000062190.13	ENSMUST00000050077.15	2509	9	-32	-960	-32	3	multi-exon	TRUE	canonical	3	58	junction_1	7.80924932371864	295	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGGAGTCTTAATATTT	NA	False	NA	NA	False	NA	NA	NA	57679588	57716427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_57680249_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
25896	chr9	-	3736	6	NNC	ENSMUSG00000032470.18	novel	4701	6	NA	NA	1707	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	206.357553774995	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCTGCCTTATTTCCTCT	4257	False	NA	NA	False	NA	NA	NA	99300498	99267474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99300389
25897	chr15	-	4253	9	NIC	ENSMUSG00000005360.15	novel	4163	10	NA	NA	6	-282	intron_retention	FALSE	canonical	3	39	junction_5	8.33666600026653	3	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGACGTCATAACACCAC	NA	False	NA	NA	False	NA	NA	NA	8739959	8664491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8680538_8717771_8717910_8738045_8738324_8739822
25898	chr10	+	2089	13	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	8	-148	intron_retention	FALSE	canonical	3	604	junction_7	37.8799272555913	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGAGTCTCTGCTGTGTTC	9224	False	NA	NA	False	NA	NA	NA	127102263	127117671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
25899	chr11	-	1861	11	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-5	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1230.91618317414	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTCTGACTTGCTGTTT	9833	False	NA	NA	False	NA	NA	NA	106890200	106879464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879802_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882147_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
25901	chr10	+	2160	4	ISM	ENSMUSG00000025395.15	ENSMUST00000178041.8	1536	13	9672	-9	-1847	9	3prime_fragment	FALSE	canonical	3	720	junction_1	11.2644968324772	12	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTTGTAAAATGTATTA	NA	False	NA	NA	False	NA	NA	NA	127860708	127865861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127862457_127862921_127863008_127865054_127865154_127865634
25902	chr15	+	3366	7	NNC	ENSMUSG00000036167.17	novel	3473	8	NA	NA	11481	399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	66.1179501597965	1	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTCGTCTCCTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	93308569	93389790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854_93387236_93387395
25903	chr2	+	2586	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	67.6288725256674	9	48	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4991	False	NA	NA	False	NA	NA	NA	127267108	127278012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127276996_127277130_127277197_127277394_127277451_127277764
25905	chr12	+	2052	11	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	105.0828720582	32	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157631	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170593_85179567
25906	chr4	-	4174	1	FSM	ENSMUSG00000070923.5	ENSMUST00000094993.3	4174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	136	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTGTATTGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	88640702	88636528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_88636500_88640700
25907	chr10	-	1489	13	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-16	-872	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.805619318392	6	27	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACCGTCGTCAAGCCCC	8729	False	NA	NA	False	NA	NA	NA	128401819	128394508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394531_128394615_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
25908	chr6	-	3948	24	NNC	ENSMUSG00000012535.15	novel	3590	24	NA	NA	11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218.855253371187	1	206	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACCAGTGTTTTTATTT	0	True	NA	NA	False	NA	NA	NA	29609799	29540828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541289_29541493_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560084_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575148_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
25909	chr13	+	2858	6	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2788	2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	107.92034099279	4	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTGGGAGTGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	35922507	36058043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35922622_35999891_36000559_36042058_36042232_36047181_36047393_36055560_36055705_36056494
25910	chr4	+	6757	19	Antisense	novelGene_ENSMUSG00002074995.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	71	40	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCGCCCCCCTCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	11261314	11322137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_11265941_11267610_11267772_11273006_11273139_11276862_11276947_11277928_11277985_11281002_11281125_11285053_11285174_11287474_11287623_11289656_11289744_11290190_11290290_11290390_11290525_11292555_11292689_11295935_11296059_11303310_11303457_11303945_11304067_11304297_11304396_11309369_11309483_11317064_11317180_11321998
25911	chr16	-	3714	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	0	-626	0	-134	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	888	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGGGGAAAAAAAATCTCA	NA	False	NA	NA	False	NA	NA	NA	16929106	16904553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
25912	chr15	-	3000	9	NNC	ENSMUSG00000022570.8	novel	1335	11	NA	NA	-7	0	intron_retention	TRUE	canonical	0	0	junction_5	171.950892335574	9	51	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8912	False	NA	NA	False	NA	NA	NA	75801609	75796531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798188_75798722_75798815_75800393_75800740_75800899_75801501
25914	chr15	-	2957	9	NIC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	0	-1402	intron_retention	FALSE	canonical	3	2074	junction_1	202.432704867568	23	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTTTATTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	10485995	10476266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_10476683_10476892_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
25915	chr1	+	3163	29	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	260.320061537284	1	114	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTGAGAGCCTCCTGC	3040	False	NA	NA	False	NA	NA	NA	171910371	171949881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942630_171944510_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946481_171949617
25916	chr6	+	2582	4	NIC	ENSMUSG00000068328.11	novel	1491	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	1074	junction_2	24.5673676969177	15	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGTCTCTGTTGCCTC	5423	False	NA	NA	False	NA	NA	NA	83031711	83034658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878
25917	chr3	+	3332	10	NNC	ENSMUSG00000043542.13	novel	3292	9	NA	NA	-1	-75	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	79.2282216833819	226	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCTGCTTGTTATGTTT	NA	False	NA	NA	False	NA	NA	NA	7568544	7618821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7600980_7601098_7604135_7604244_7616442
25918	chr9	+	3422	23	FSM	ENSMUSG00000035919.17	ENSMUST00000150395.8	3425	23	-3	6	-3	-6	multi-exon	FALSE	canonical	3	14	junction_1	19.2294217582595	25	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTCAAACAATAACTGGA	NA	False	NA	NA	False	NA	NA	NA	22387014	22799564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_22387352_22387865_22387922_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
25919	chr7	+	3388	3	FSM	ENSMUSG00000054715.12	ENSMUST00000120809.2	1826	3	-14	-1548	-9	2	multi-exon	FALSE	canonical	1	1	junction_1	10	122	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTCCAACATCTG	NA	False	NA	NA	False	NA	NA	NA	12631753	12643012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12631805_12637527_12638013_12640160
25920	chr7	-	1745	16	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	503.990670107647	1	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGAGGCATGGGGGCTCA	NA	False	NA	NA	False	NA	NA	NA	33929666	33901591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33928725_33928799_33929516
25921	chr11	+	2044	4	NIC	ENSMUSG00000017404.13	novel	751	6	NA	NA	1	-15	intron_retention	FALSE	canonical	3	9068	junction_1	3205.77232850716	17	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97917783	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97917817_97918648_97920342_97920600_97920712_97921096
25923	chr2	-	1930	7	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	8340	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5010.8437995345	1	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTAGTGCTCCATTGCT	NA	False	NA	-119	True	NA	NA	NA	154726362	154713339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714088_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230
25925	chr8	+	2227	16	ISM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	176	-1	-24	0	3prime_fragment	FALSE	canonical	3	403	junction_2	59.8663697097312	146	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	NA	False	NA	NA	NA	85416068	85426416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
25926	chrX	-	3545	7	NNC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	236	-170	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	103.758399927695	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGCTTGCTTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	156381403	156349112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156351813_156351929_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381306
25928	chr10	+	2371	14	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-45	0	intron_retention	FALSE	canonical	0	0	junction_2	125.056011119657	266	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	NA	False	NA	NA	NA	75399936	75422016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420631_75420842_75420991_75421334_75421424_75421539_75421714
25929	chr8	+	2037	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	7	0	7	0	multi-exon	FALSE	canonical	3	103	junction_1	228.433708510092	89	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	NA	NA	NA	72889658	72906984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
25930	chr4	+	1836	7	NIC	ENSMUSG00000028797.21	novel	1366	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	322.433326441297	6	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3197	False	NA	NA	False	NA	NA	NA	129494493	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129494525_129494775_129495037_129495199_129495419_129495662_129495755_129495987_129496055_129500879_129500973_129501248
25931	chrX	-	1997	5	NNC	ENSMUSG00000046942.18	novel	1854	4	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	132.669467097746	115	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	78715056	78666836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_78668390_78671446_78671527_78685326_78685395_78689026_78689155_78714888
25932	chr7	-	2560	3	NIC	ENSMUSG00000074129.15	novel	734	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	16413	junction_2	590.5	18	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCTGCCTGGCCTGCCC	NA	False	NA	NA	False	NA	NA	NA	44778160	44775347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775962_44776132
25933	chr18	+	1683	6	NNC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-12	951	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_4	427.566883656815	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAGAGGGCAGCAGAGC	NA	False	NA	NA	False	NA	NA	NA	57506951	57523258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57521897_57522095_57522291
25934	chrX	+	3912	18	NIC	ENSMUSG00000035967.16	novel	3611	18	NA	NA	-13	1	intron_retention	FALSE	canonical	3	44	junction_10	16.0656094259874	117	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTAGGTGTATGTCTC	NA	False	NA	NA	False	NA	NA	NA	55500203	55553201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55539492_55539604_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
25935	chr5	-	2511	17	NIC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	-18	-1	combination_of_known_splicesites	FALSE	canonical	3	24	junction_6	48.426329357076	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGATTGTGTCCAAGGCT	NA	False	NA	NA	False	NA	NA	NA	140307325	139994449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
25936	chr15	-	1268	9	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	823	1	0	-1	3prime_fragment	FALSE	canonical	3	23824	junction_4	2715.03229435213	28	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	4341	False	NA	NA	False	NA	NA	NA	79966784	79961992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590
25937	chr9	+	2783	13	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	96	-404	intron_retention	FALSE	non_canonical	0	0	junction_3	289.508527508258	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCCCAAAGCATCAGTT	5608	False	NA	NA	False	NA	NA	NA	35122546	35127906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124011_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
25938	chr5	+	2307	9	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	5	-391	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	456.222653290036	1	65	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACAGCACCCTGCCATC	NA	False	NA	NA	False	NA	NA	NA	111478633	111535834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478708_111486122_111486295_111494348_111494463_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
25939	chr4	-	3771	6	NIC	ENSMUSG00000008489.19	novel	3797	7	NA	NA	-13	55	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	36.2082863444267	175	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	91260319	91138944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_91141805_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
25940	chr15	+	4041	25	Intergenic	novelGene_3337	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	18	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAGGAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	84948887	85016178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_84949307_84950419_84950529_84951935_84952008_84953845_84953997_84954979_84955136_84955782_84955939_84970292_84970390_84973792_84973949_84975074_84975219_84976143_84976289_84980849_84980950_84981723_84981822_84982095_84982234_84991117_84991265_84994851_84995033_84996887_84997078_84998881_84999087_85000038_85000121_85004817_85004960_85005789_85006049_85007920_85008160_85011667_85011872_85011958_85012071_85013870_85014060_85016028
25941	chr18	+	3315	19	NNC	ENSMUSG00000041238.17	novel	781	8	NA	NA	1	-16	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	51.6930637465625	3	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATATACCAACCATACAAAT	3705	False	NA	NA	False	NA	NA	NA	11790899	11875919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_11791286_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
25943	chr11	+	3428	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-10	0	intron_retention	FALSE	canonical	3	44	junction_2	39.5929704087117	115	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	NA	False	NA	NA	NA	51153966	51172591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
25944	chr10	-	1640	6	Antisense	novelGene_ENSMUSG00000060904.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTAGTTGAGCCTGGGC	3805	False	NA	NA	False	NA	NA	NA	88579952	88567365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_88567426_88569403_88569543_88571759_88571840_88572950_88573063_88577766_88577947_88578883
25946	chr15	-	1960	9	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	377	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.608934471385	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83056416	83037697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038907_83043091_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
25947	chr6	-	2071	10	NIC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	17	-4	combination_of_known_splicesites	FALSE	canonical	2	9	junction_9	237.418524036259	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCTCACAGTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	95695764	95451126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95695669
25948	chr5	+	1836	3	ISM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	405	7497	405	-412	intron_retention	FALSE	canonical	3	3893	junction_2	99.5	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGAGATGAAGCATAAAT	NA	False	NA	NA	False	NA	NA	NA	129864466	129867715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129864640_129865297_129865362_129866116
25949	chr12	+	2739	14	FSM	ENSMUSG00000021115.16	ENSMUST00000221312.2	2520	14	-22	-197	-22	-12	multi-exon	FALSE	canonical	3	129	junction_12	248.778292970376	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGTCTTTTACACAAGC	NA	False	NA	NA	False	NA	NA	NA	105976519	106041656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106037901_106039877_106039938_106041265
25950	chr12	+	2275	10	NIC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	0	-40	intron_retention	FALSE	canonical	3	1446	junction_1	308.913548176369	71	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTGTAATGAGTACCATG	3973	False	NA	NA	False	NA	NA	NA	100076412	100089624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100086398_100087251_100087407_100089316
25951	chr13	-	1601	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311961_34312068_34312515_34312854_34312966_34313228_34313338_34314159
25952	chr12	-	1843	20	ISM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	34	8329	-16	-141	5prime_fragment	FALSE	canonical	3	1685	junction_9	188.535205056526	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTAAAGCATTTTACT	NA	False	NA	NA	False	NA	NA	NA	13299180	13275302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
25953	chr6	-	2071	3	NNC	ENSMUSG00000030117.6	novel	2125	2	NA	NA	98	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10	1592	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTATTACAGCAAGATTTT	9945	False	NA	NA	False	NA	NA	NA	122586948	122582370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122584095_122585230_122585284_122586654
25954	chr19	+	2920	18	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	-145	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	293.902898071471	1	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGACAAATAAAAAGCTGT	3324	False	NA	NA	False	NA	NA	NA	8919093	8929631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919419_8920828_8920901_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
25955	chr5	-	2102	14	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10678	-8063	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	65	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGGCTGGCCTAGCTCC	3875	False	NA	NA	False	NA	NA	NA	129875191	129864507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129866255_129866889_129867061_129867654_129867750_129868530_129868644_129868845_129869004_129869080_129869164_129870696_129870780_129871412_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
25956	chr5	+	2623	9	Antisense	novelGene_ENSMUSG00000105647.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	2.31503239718152	49	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGTTCAAGCTGAGGGC	NA	False	NA	NA	False	NA	NA	NA	32893647	32903666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_32894798_32895328_32895489_32895729_32895886_32896131_32896265_32896480_32896720_32897968_32898132_32899551_32899820_32902812_32903033_32903532
25958	chr17	+	2366	7	ISM	ENSMUSG00000002307.17	ENSMUST00000170075.9	2673	8	828	55	152	9	3prime_fragment	FALSE	canonical	3	546	junction_4	69.9700332682182	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAAAATGTTTTAAGTT	6553	False	NA	NA	False	NA	NA	NA	34129402	34134501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
25959	chr18	-	3809	14	FSM	ENSMUSG00000024240.14	ENSMUST00000115870.9	3817	14	8	0	8	0	multi-exon	FALSE	canonical	1	5	junction_13	15.1118120655772	87	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTGGTCTTTGCCTT	-3	True	NA	NA	False	NA	NA	NA	6516100	6435950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6515864
25960	chr6	-	1767	6	NIC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	83	0	intron_retention	FALSE	canonical	3	5197	junction_2	468.604737492057	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471671	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125438273_125439076_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
25961	chr10	+	2920	17	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	7	-36	intron_retention	FALSE	canonical	3	135	junction_2	27.9810203530893	2	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGACGAGGGTCAGCCC	9122	False	NA	NA	False	NA	NA	NA	41352338	41361031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41360251_41360371_41360529_41360728_41360806_41360980
25962	chr18	-	4220	16	NIC	ENSMUSG00000041225.17	novel	2500	17	NA	NA	-1	162	combination_of_known_splicesites	FALSE	canonical	3	10	junction_13	45.5037971553535	1	133	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTGTCCTGTGTTTCT	11	True	NA	NA	False	NA	NA	NA	6135936	6024622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6111684_6112440_6115813_6115851_6135803
25963	chr16	+	1833	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	51	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGAGAACAGCAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	45973349	45975182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45973300_45975200
25964	chr4	+	2168	9	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	77	-55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	159.179487921654	4	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGCTTGTGTATGACTT	NA	False	NA	NA	False	NA	NA	NA	130640512	130663397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130663009_130663308
25965	chr5	+	1903	11	NIC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1465	-5	intron_retention	FALSE	canonical	3	1539	junction_8	111.513048563834	24	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCAGTGCTTCCAGAT	NA	False	NA	NA	False	NA	NA	NA	21991745	22008780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22008271_22008363_22008461_22008544
25966	chr7	-	2486	2	FSM	ENSMUSG00000090862.4	ENSMUST00000205265.2	1927	2	-16	-543	0	0	multi-exon	FALSE	canonical	3	9102	junction_1	0	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	115933368	115930746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_115933184_115933319
25967	chr13	+	2379	17	NNC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	56.2943922051744	2	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTAGTTTGCATTCT	4732	False	NA	NA	False	NA	NA	NA	38221214	38245404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242707_38244014_38244069_38244730
25968	chr13	-	1631	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-1150	-80	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	650.110213687517	4	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATCCCTGAATCAAACAC	NA	False	NA	NA	False	NA	NA	NA	97336015	97312918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97335877
25969	chr13	+	3042	13	FSM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	-10	392	-10	-117	multi-exon	FALSE	canonical	3	153	junction_7	19.2476549798209	420	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCTTTGTTAGAATGAT	7848	False	NA	NA	False	NA	NA	NA	67080883	67146073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376_67111536_67114453_67114606_67120557_67120700_67122508_67122622_67124809_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
25971	chr5	-	1845	12	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	0	468	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	696.626155121956	2091	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACCGTGCTGGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	117527087	117517213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518083_117518204_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
25972	chr1	+	2606	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-72	13	-72	-13	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	3	121	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTTGTTAAACATACAT	NA	False	NA	NA	False	NA	NA	NA	4927964	4968115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
25973	chr5	+	3038	21	NNC	ENSMUSG00000013629.17	novel	6489	43	NA	NA	41	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	222.59921383509	8	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTGTAATAAACAGCCAAAC	7125	False	NA	NA	False	NA	NA	NA	31212195	31235799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216397_31230168_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
25974	chr5	+	2909	16	NIC	ENSMUSG00000038828.14	novel	6110	17	NA	NA	0	-13	intron_retention	FALSE	canonical	3	358	junction_2	22.4453905191145	199	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACAGACTGGATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	31026976	31034794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31027163_31027932_31028133_31028763_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
25975	chr15	+	2331	14	NNC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	-75	1	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	531.293408947008	2179	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGCTAGTCATTTATT	109	False	NA	NA	False	NA	NA	NA	38662101	38692688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_38662328_38673100_38673265_38674140_38674209_38674873_38675061_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
25976	chr12	+	4767	15	NNC	ENSMUSG00000041781.10	novel	5732	15	NA	NA	23	-904	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	58.5139526357708	1	96	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTGTACGGTGGGTTGT	NA	False	NA	NA	False	NA	NA	NA	101942269	101971779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967270_101968958_101969022_101969387
25978	chr5	-	2450	10	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-6	-21	intron_retention	FALSE	canonical	3	174	junction_9	75.0931931290779	345	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCAGCTATTTTGTAC	NA	False	NA	NA	False	NA	NA	NA	34794490	34791013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792307_34792394_34792876_34792952_34793469_34793753_34793851_34793937_34794128_34794270
25979	chr11	+	2008	8	NNC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	7	0	intron_retention	FALSE	canonical	1	2	junction_1	227.805502433053	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68936503	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68936835_68938526_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
25980	chr11	+	1165	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17540	intron_retention	FALSE	non_canonical	0	0	junction_2	527	5044	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9431	False	NA	NA	False	NA	NA	NA	88861077	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861306_88861723_88861846_88863425
25981	chr17	+	2556	6	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	-34	1	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_5	348.298377831422	3	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	NA	False	NA	NA	NA	48717007	48724283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48723559_48723711
25982	chr13	-	2117	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	28	-151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	300.9736219235	2	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATAGTTTGATGACTTAC	NA	False	NA	NA	False	NA	NA	NA	9046058	9022666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9022959_9023156_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030013_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9042680_9042852_9045984
25983	chr2	-	4680	2	FSM	ENSMUSG00000066798.4	ENSMUST00000053098.6	4535	2	-148	3	-148	0	multi-exon	FALSE	canonical	3	19	junction_1	0	81	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTGGGCTTGTGTATT	NA	False	NA	NA	False	NA	NA	NA	37321079	37315514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_37319936_37320820
25984	chr5	-	2336	12	NIC	ENSMUSG00000029422.16	novel	2270	11	NA	NA	-9	-20	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	214.653401195108	188	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTAATAAAGTGCCTTATA	4312	False	NA	NA	False	NA	NA	NA	123887486	123866512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123873884_123873960_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
25985	chr8	+	1564	2	Genic_Genomic	ENSMUSG00000071041.5	novel	1545	1	NA	NA	-69	40	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTGGGAAAAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	100757120	100758774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_100758028_100758117
25988	chr3	+	3629	16	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5406.02293496183	1	178	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	NA	False	NA	NA	NA	102927930	102965502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954499_102956939_102957044_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
25990	chr4	-	1833	4	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	802.870267643949	12	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCCTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137085028	137047013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048504_137056023_137056158_137063303_137063441_137084956
25991	chr6	+	2381	12	NIC	ENSMUSG00000033706.14	novel	2486	13	NA	NA	-6	-6	combination_of_known_splicesites	FALSE	canonical	1	3	junction_5	152.310307438683	789	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTTTGCAACAATGCCTT	NA	False	NA	NA	False	NA	NA	NA	85408964	85423411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
25992	chr2	-	2604	8	NIC	ENSMUSG00000027496.16	novel	1905	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	87	junction_7	426.039712626292	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	False	NA	NA	False	NA	NA	NA	172212441	172198115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
25993	chr2	-	4497	4	ISM	ENSMUSG00000051149.16	ENSMUST00000057793.11	4917	5	2216	3	2003	-3	3prime_fragment	FALSE	canonical	3	20	junction_3	72.1495360730445	2	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTGCTTTTATTACA	5323	False	NA	NA	False	NA	NA	NA	168046626	168022908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168027093_168029486_168029580_168031201_168031315_168046519
25994	chr7	-	2924	10	FSM	ENSMUSG00000030556.14	ENSMUST00000053950.10	2923	10	-3	2	-3	0	multi-exon	FALSE	canonical	3	32	junction_5	16.1894646431591	206	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGTCTTCTCTCCTCCT	569	False	NA	NA	False	NA	NA	NA	67294982	67163159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
25996	chr12	-	2990	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-13	-7	intron_retention	FALSE	canonical	3	128	junction_16	37.3739025758617	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	84664157	84649433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
25997	chr11	-	2237	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1569.52799875915	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9659	False	NA	NA	False	NA	NA	NA	106679315	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677740_106677856_106679135
26000	chr11	+	1712	8	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4337	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2606.81482867894	3	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGATTCAAAGTATGTG	NA	False	NA	NA	False	NA	NA	NA	55360559	55391327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378340_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
26002	chr3	+	2485	15	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	222.489715423855	7	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742350	157772727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771957
26003	chr18	+	2693	8	NNC	ENSMUSG00000060450.15	novel	2886	8	NA	NA	2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	103.241543607845	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAGATCATCCTGTAAT	978	False	NA	NA	False	NA	NA	NA	38429739	38450878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_38429852_38432806_38432950_38433464_38433538_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
26004	chr2	+	5254	22	ISM	ENSMUSG00000039844.21	ENSMUST00000238899.2	4205	24	36014	-1378	-22653	0	3prime_fragment	TRUE	canonical	3	232	junction_1	35.494434426871	228	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGATGCCATGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	29569840	29630365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_29569863_29576116_29576296_29579118_29579276_29589008_29589098_29589697_29589851_29590197_29590319_29590679_29590864_29592204_29592691_29597209_29597413_29612235_29612322_29614784_29614897_29616217_29616294_29620539_29620625_29622838_29622932_29623588_29623775_29624211_29624297_29624436_29624532_29625813_29625893_29625995_29626098_29626583_29626682_29627338_29627468_29627931
26005	chr7	-	3175	13	NIC	ENSMUSG00000038520.16	novel	2411	16	NA	NA	-1	1	intron_retention	FALSE	canonical	3	201	junction_7	25.4081953095628	8	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGCTGGCTGGCATCAGGA	7882	False	NA	NA	False	NA	NA	NA	44498320	44490454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44490845_44490966_44491054_44491406_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
26006	chr2	+	4529	33	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	26171	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	350.293603136622	1	237	22	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGTCATGTGGCAACT	NA	False	NA	NA	False	NA	NA	NA	30202611	30234275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30202706_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212031_30212179_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223489_30226361_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
26008	chr16	+	2438	17	NNC	ENSMUSG00000093575.2	novel	1012	9	NA	NA	22	21630	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	69.7040339130383	1	19	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	NA	False	NA	NA	False	NA	NA	NA	3702533	3759011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3702671_3715114_3715245_3717735_3717833_3718556_3718744_3719648_3719990_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755149_3755246_3755422_3755479_3758631
26009	chr9	-	2238	7	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	5963	70439	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGGGCCGGGGCCGGGGC	NA	False	NA	NA	False	NA	NA	NA	58560612	58489693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58489808_58530967_58531136_58535113_58535210_58547949_58548084_58550809_58550987_58558537_58558614_58559139
26010	chr11	-	2485	27	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	158.171093043439	1	49	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGAGTGATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	54924223	54869938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872236_54872286_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
26011	chr13	-	2556	5	NIC	ENSMUSG00000021576.7	novel	1131	6	NA	NA	19	-3	intron_retention	FALSE	canonical	3	601	junction_1	95.0920606570286	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCCTAGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	74465384	74451638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
26012	chr4	+	1539	13	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	66	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6723.20841480382	4	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCGCAGAAGTCCACCAG	NA	False	NA	NA	False	NA	NA	NA	150321765	150333314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328500_150328532_150328697_150328832_150329571_150329795_150331050_150331225_150331912_150332110_150332287_150332397_150332517_150332577_150332942_150333186_150333226
26014	chr4	-	3902	7	NNC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	689	-16	intron_retention	FALSE	canonical	0	0	junction_6	156.747585485568	3	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGAGTTTTGTAAATGGG	8869	False	NA	NA	False	NA	NA	NA	132066554	132059249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063438_132064678
26015	chr2	-	4580	16	NNC	ENSMUSG00000026773.20	novel	4756	16	NA	NA	0	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.8595484268537	78	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGGGACTCGCTTCTCA	6308	False	NA	NA	False	NA	NA	NA	11506912	11476635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_11477682_11477736_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11506435
26016	chr1	+	1937	2	NNC	ENSMUSG00000042229.10	novel	2861	2	NA	NA	-7	-884	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCTGTTTTCTGGGTGTT	6631	False	NA	NA	False	NA	NA	NA	134422378	134435628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134422548_134433860
26018	chr9	-	3249	14	NIC	ENSMUSG00000042790.17	novel	3964	14	NA	NA	3	-5	intron_retention	FALSE	canonical	3	22	junction_2	11.5799254987333	3	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACAACAAAATCAGGTTC	9593	False	NA	NA	False	NA	NA	NA	45817702	45775601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_45776297_45777863_45777960_45778244_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
26019	chr9	+	1524	8	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6044.78384009465	110	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTGTGTTTTGTTTT	1883	False	NA	NA	False	NA	NA	NA	59563869	59586653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572595_59577967_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
26020	chr9	-	3764	3	FSM	ENSMUSG00000036737.13	ENSMUST00000136902.2	780	3	-277	-2707	-277	-6	multi-exon	FALSE	canonical	3	280	junction_2	8	189	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAATGCTTTCATTTATT	NA	False	NA	NA	False	NA	NA	NA	119072705	119067503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_119070283_119070776_119070842_119071785
26021	chr18	-	2224	11	NIC	ENSMUSG00000001380.8	novel	1989	13	NA	NA	10	0	intron_retention	FALSE	canonical	3	550	junction_6	66.3807954155417	55	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	NA	False	NA	NA	NA	36916163	36899580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
26022	chr13	+	3757	2	NNC	ENSMUSG00000045767.10	novel	4652	2	NA	NA	6446	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTACTACTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	55847382	55851313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55848027_55848200
26023	chr11	-	2334	25	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	11834	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	132.127857900343	3	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGAGTGATGTGTGTG	6260	False	NA	NA	False	NA	NA	NA	54912407	54869938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885137_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362
26024	chr18	+	2055	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	8	2945	8	1	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	2246	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	68433433	68454978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
26025	chr8	+	3178	16	NNC	ENSMUSG00000031657.17	novel	3251	15	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	71.3409341744898	174	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	NA	NA	NA	88864486	88898655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_88864786_88864902_88864954_88865022_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
26026	chr1	+	2628	15	NNC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	53.6637775450831	5	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	NA	False	NA	NA	NA	151304387	151333912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324030_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
26027	chr4	+	3331	2	ISM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	4679	3	4604	-3	intron_retention	FALSE	canonical	3	655	junction_1	0	3	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGAGTTGCATTTCAT	1479	False	NA	NA	False	NA	NA	NA	101509593	101516558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_101509672_101513305
26028	chr6	+	3119	6	ISM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	8365	7	0	-4	3prime_fragment	FALSE	canonical	3	608	junction_1	165.608453890494	3	128	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGGCTTATGTGTCTTT	8290	False	NA	NA	False	NA	NA	NA	29356469	29376667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
26029	chr12	+	2242	19	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	-47	1497	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	399.421452745819	3	39	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACCTTAGAGGTGAGC	7864	False	NA	NA	False	NA	NA	NA	76302024	76349787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336637_76337762_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347362_76348031_76348173_76349732
26031	chr7	+	1512	3	ISM	ENSMUSG00000025464.16	ENSMUST00000097967.4	1024	5	5023	0	5023	0	3prime_fragment	FALSE	canonical	3	250	junction_2	3	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	NA	False	NA	NA	NA	139710643	139714247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_139711673_139712293_139712452_139713922
26032	chr11	-	435	4	Antisense	novelGene_ENSMUSG00000020721.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCGGGCGCCACGCTGGC	2011	False	NA	NA	False	NA	NA	NA	107468781	107437819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_107437877_107440170_107440226_107465761_107465991_107468687
26033	chr17	-	3564	6	NNC	ENSMUSG00000024045.7	novel	3260	12	NA	NA	1306	-5	intron_retention	TRUE	non_canonical	0	0	junction_1	286.956721475556	2	98	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATTTTTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	32533398	32523671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32524671_32525483_32525560_32528392_32528524_32529551_32529629_32529926_32530069_32531259
26034	chr11	-	3207	15	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	73	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	553.95704541351	1	133	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATTAAATAAAATTGATT	9632	False	NA	NA	False	NA	NA	NA	106606012	106545073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574450_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590740_106605844
26036	chr3	+	1594	13	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	541.875825002576	1	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAAGCGTGCTGGATTTG	NA	False	NA	NA	False	NA	NA	NA	32762918	32781116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774583_32774633_32776768_32776865_32779395_32779483_32780670
26037	chr17	-	3159	21	NIC	ENSMUSG00000019214.15	novel	3208	22	NA	NA	-12	7	intron_retention	FALSE	canonical	3	468	junction_20	77.3230075721321	237	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGCTCATAGGATGGTGC	5710	False	NA	NA	False	NA	NA	NA	25946357	25938012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
26038	chr5	-	2037	14	NIC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	0	-170	intron_retention	FALSE	canonical	3	610	junction_8	50.4479343763472	813	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTGGTTTTTTAGTGTG	8841	False	NA	NA	False	NA	NA	NA	110801283	110796453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
26039	chr10	-	3183	8	NNC	ENSMUSG00000075232.7	novel	3204	8	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	209.417559640337	1	137	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGAGAAAGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	40178180	40163461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40165466_40166113_40166268_40166373_40166612_40167989_40168033_40169159_40169258_40170176_40170300_40170712_40170800_40177744
26040	chr17	+	1388	1	ISM	ENSMUSG00000002835.10	ENSMUST00000233325.2	7698	11	24084	4	13155	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAAGAACTGCCTTGACC	5454	False	NA	NA	False	NA	NA	NA	56377897	56379285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56377900_56379300
26041	chr9	+	4325	4	NIC	ENSMUSG00000010048.11	novel	2054	11	NA	NA	31	-14	intron_retention	FALSE	canonical	1	1	junction_2	345.466190659649	8	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTTAGCCCCCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	107464986	107470223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107467222_107467307_107468310_107468766_107468905_107469273
26042	chr12	+	3746	7	NIC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	42	1	intron_retention	FALSE	canonical	3	224	junction_2	15.4775823549919	6	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGAACACATCTAGTTTG	NA	False	NA	NA	False	NA	NA	NA	28699664	28709583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_28699816_28702023_28702140_28703061_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
26043	chrX	+	3183	23	NNC	ENSMUSG00000000037.18	novel	4842	26	NA	NA	2	-177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	111.556650916189	1	78	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTAGAGATAATTCTCAGG	1337	False	NA	NA	False	NA	NA	NA	159945747	160039705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159946245_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992607_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160010368_160010453_160011672_160011757_160013086_160013171_160014332_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
26044	chr9	+	3281	4	FSM	ENSMUSG00000032383.8	ENSMUST00000213785.2	3305	4	20	4	11	-4	multi-exon	FALSE	canonical	3	2090	junction_3	185.159990878759	28	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATAGCTTGGGTGTGGGCT	1585	False	NA	NA	False	NA	NA	NA	65967523	65973901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65972954_65973576
26045	chr2	-	2608	7	ISM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	37096	0	24967	0	3prime_fragment	FALSE	canonical	3	54	junction_1	5.27309733985213	3	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTACTTTTTACTGCT	8197	False	NA	NA	False	NA	NA	NA	157009336	156987812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_156989597_156992588_156992754_156994815_156994965_157001579_157001659_157003299_157003372_157005458_157005636_157009154
26046	chr1	+	2483	7	NNC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	42	-2	intron_retention	FALSE	canonical	2	10	junction_5	156.132422428314	34	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATCATTGTCGTCGTG	8260	False	NA	NA	False	NA	NA	NA	134333807	134339472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134336970_134337425_134338230
26048	chr7	+	2898	4	NNC	ENSMUSG00000025510.15	novel	1708	8	NA	NA	-14	-4	intron_retention	FALSE	non_canonical	0	0	junction_3	124.782477402345	6	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATGTATAAGCACTCG	NA	False	NA	NA	False	NA	NA	NA	141047320	141051372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141047380_141048331_141049259_141049378_141050139_141050220
26049	chr16	+	1646	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	764.075231898012	1	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCTAAGTGTGAACTGGA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929435_22930293_22930343_22930566_22930647_22931100_22931208_22931916
26050	chr16	-	1748	7	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	23	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1269.5776200506	19	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAAAGTCGCTGT	977	False	NA	NA	False	NA	NA	NA	11021172	11010845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011602_11012323_11012576_11014137_11014295_11017434_11017584_11019158_11019295_11020181_11020322_11021014
26051	chr6	-	2257	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	132	10	66	-10	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAAATCATGTTGTTTGC	9022	False	NA	NA	False	NA	NA	NA	47790232	47773084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
26052	chr2	+	3698	8	FSM	ENSMUSG00000027651.17	ENSMUST00000109518.8	4399	8	-188	889	5	-889	multi-exon	FALSE	canonical	2	5	junction_6	76.3520310997764	233	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTGTGATGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	157870432	157919238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157912480_157912577_157916849
26054	chr3	-	1595	13	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	5639	16570	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACCGGACGAAAGATAAC	NA	False	NA	NA	False	NA	NA	NA	32781123	32762975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32763028_32766014_32766092_32766247_32766424_32768664_32768766_32769563_32769663_32772179_32772273_32772514_32772624_32772715_32772804_32774047_32774112_32774334_32774448_32774581_32774665_32779395_32779481_32780668
26055	chr11	-	2423	2	FSM	ENSMUSG00000058546.9_ENSMUSG00000077625.3_ENSMUSG00000065676.3	ENSMUST00000144561.2	503	2	-1925	5	29	-5	multi-exon	FALSE	canonical	3	18853	junction_1	0	104	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAATGCTGCTTGTCA	5992	False	NA	NA	False	NA	NA	NA	78074381	78071765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78072050_78072242
26057	chr12	+	2732	6	NIC	ENSMUSG00000020605.10	novel	2959	7	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	58.3355809090815	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGTGTTGTTCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	8363450	8393824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8363498_8367784_8367951_8373869_8374102_8386237_8386396_8387632_8387769_8391831
26058	chr1	-	1660	7	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	-13	-554	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2107.35398202475	14	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7353	False	NA	NA	False	NA	NA	NA	160040388	160030490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035201_160035375_160035948_160036166_160040216
26059	chr4	-	5634	17	NNC	ENSMUSG00000034853.17	novel	2939	16	NA	NA	-105	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	8.10478253872366	69	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAACAGCATGTTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	106662300	106601756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_106602217_106602301_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106615502_106615623_106617277_106617432_106619160_106619297_106619641_106619741_106620590_106620652_106627900_106627971_106628539_106628754_106662102
26060	chr7	+	3057	27	NNC	ENSMUSG00000056394.21	novel	3174	28	NA	NA	-47	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	383.501874662722	1	143	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	1060	False	NA	NA	False	NA	NA	NA	13011191	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023394_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032763_13032984_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
26061	chr11	-	1963	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1334.5135424797	1	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676308_106677749_106677901_106679098
26062	chr14	+	1273	6	NNC	ENSMUSG00000021906.15	novel	717	6	NA	NA	-22	-261	intron_retention	FALSE	canonical	2	2	junction_5	91.3468116575505	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCTGGGAGAATTGGAAA	NA	False	NA	NA	False	NA	NA	NA	31807308	31821196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821062
26063	chr1	+	1890	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	777.070062898489	3	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724132	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735138_59735259_59737481_59737619_59740043_59740081_59743284_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
26064	chr3	+	2060	18	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	521.997739591282	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGTTATTTTGTTTTC	4854	False	NA	NA	False	NA	NA	NA	34074251	34123489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093262_34093383_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104196_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118327_34118450_34118469_34123065
26065	chr17	-	2122	15	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	195.917204503352	11	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTATCTGTGGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	28841428	28808570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808982_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
26066	chr14	-	2498	17	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-3	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	191.827355648249	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	4856	False	NA	NA	False	NA	NA	NA	54754821	54744653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754057_54754709
26067	chr11	+	4187	16	ISM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	20	7852	20	-6586	5prime_fragment	FALSE	canonical	3	122	junction_1	12.2085580184102	4	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGTTCCCGTTATTGGT	NA	False	NA	NA	False	NA	NA	NA	74816668	75047422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_74816830_74819818_74821575_74822402_74822596_74823166_74823278_74825820_74825928_74826184_74826264_74836347_74836459_74836832_74837046_74872677_74872740_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986
26069	chrX	+	2831	5	NIC	ENSMUSG00000009995.18	novel	826	8	NA	NA	5	1	intron_retention	FALSE	canonical	3	226	junction_4	13.9530462623758	53	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	73326360	73333755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783
26070	chr10	-	2142	6	NIC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-29	-2	intron_retention	FALSE	canonical	3	2552	junction_2	154.463458461864	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTGTGGTGCAATCCTA	5571	False	NA	NA	False	NA	NA	NA	79875573	79871786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79874448_79875416
26072	chr18	+	1972	15	NNC	ENSMUSG00000034484.9	novel	2067	15	NA	NA	-11	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	334.795802828884	2280	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAATATTAGTAATAAAT	NA	False	NA	NA	False	NA	NA	NA	53309376	53353901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346025_53349516_53349597_53351173_53351255_53351360_53351433_53353443
26073	chr5	+	1937	16	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAGCTAGTTCCTGAAG	NA	False	NA	NA	False	NA	NA	NA	31315086	31330372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315487_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323358_31323702_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125
26075	chrX	-	2413	12	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-5	-10	intron_retention	TRUE	non_canonical	0	0	junction_1	415.306080494697	2	84	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921357	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158905762_158906134_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
26076	chr3	-	2749	9	FSM	ENSMUSG00000028187.11	ENSMUST00000029838.11	1661	9	16	-1104	-2	1104	multi-exon	FALSE	canonical	3	514	junction_1	36.008462547018	1180	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTATCATAATAAAAAGGTA	NA	False	NA	NA	False	NA	NA	NA	146227168	146210606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_146212331_146212826_146212954_146213268_146213451_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
26077	chr13	+	2493	4	ISM	ENSMUSG00000021218.11	ENSMUST00000059515.8	2077	10	22434	6	-1378	-6	3prime_fragment	FALSE	canonical	3	1947	junction_2	51.6741930002029	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCACTCTTGGTATTGA	NA	False	NA	NA	False	NA	NA	NA	3610563	3615814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_3612038_3614539_3614685_3614858_3614914_3614995
26078	chr7	-	3075	22	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-13	-3	intron_retention	FALSE	canonical	3	3	junction_15	49.8097514335143	1	49	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCTCATGATGTAGATC	NA	False	NA	NA	False	NA	NA	NA	140697732	140681133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688076_140688163_140688299_140688530_140688605_140688697_140688757_140690288_140690426_140690543_140690670_140691067_140691143_140697626
26079	chr18	-	2630	15	NNC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	44	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	123.093957808576	136	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	NA	False	NA	NA	NA	12996393	12888384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12889159_12889242_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
26080	chr10	+	3387	4	NNC	ENSMUSG00000020180.11	novel	3036	4	NA	NA	4	45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1771.60611373472	55	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTGAGGCTTTTTTG	1869	False	NA	-56	True	NA	NA	NA	75353851	75371297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75353960_75355147_75355295_75368010_75369262_75369416
26081	chr2	+	2504	17	FSM	ENSMUSG00000027012.16	ENSMUST00000112142.8	2585	17	72	9	20	-2	multi-exon	FALSE	canonical	1	5	junction_4	197.040565303188	28	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAACTTCTCAAATTTTCA	NA	False	NA	NA	False	NA	NA	NA	71042121	71093633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
26082	chr15	-	3656	2	FSM	ENSMUSG00000009739.18	ENSMUST00000177335.2	3654	2	-7	5	-7	-5	multi-exon	FALSE	canonical	3	66	junction_1	0	80	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCGTACTTCTCTGCCTA	8499	False	NA	NA	False	NA	NA	NA	100478119	100473206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_100476500_100477756
26083	chr16	-	1530	6	NNC	ENSMUSG00000022858.17	novel	1369	8	NA	NA	-108	628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	841.591017062326	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTATTTAGTGACTGATG	4608	False	NA	NA	False	NA	NA	NA	22071507	22064569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069716_22071343
26084	chr13	-	1548	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3098.1359560818	2	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4798	False	NA	NA	False	NA	NA	NA	58550283	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541020_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542356_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
26085	chr4	-	1615	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	729.869946558213	10	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093155_41093304_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
26086	chr2	+	783	8	NNC	ENSMUSG00000000194.14	novel	6134	18	NA	NA	5	-6516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	164.497379173961	3	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTTCTTTCTGTCTGGG	NA	False	NA	NA	False	NA	NA	NA	31042367	31068347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31066899_31066967_31067796_31067908_31068265
26088	chr12	+	3016	2	NNC	ENSMUSG00000020649.12	novel	730	2	NA	NA	42	-77	intron_retention	FALSE	non_canonical	0	0	junction_1	0	14	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACTCTTGAATTAACA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24761073_24763843
26089	chr16	+	1812	9	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	3	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	253.375431672055	1876	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7073	False	NA	NA	False	NA	NA	NA	38379062	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38379125_38384476_38384640_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
26092	chr15	-	3094	7	NNC	ENSMUSG00000053411.17	novel	663	6	NA	NA	-4	6	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	191.328687516187	1	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79855324	79800001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79802252_79802440_79802678_79802953_79803129_79805572_79805640_79807672_79807739_79814786_79814831_79855069
26095	chr11	+	1991	13	NNC	ENSMUSG00000017499.16	novel	4614	12	NA	NA	1	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	187.589460139837	3	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTACTGGTTTTACCCAT	18	False	NA	NA	False	NA	NA	NA	98798627	98812200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941_98812064_98812123
26096	chr11	-	3521	8	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	86	-5	intron_retention	FALSE	canonical	0	0	junction_3	199.06957044599	1	106	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTACTACATTGCCGAT	1063	False	NA	NA	False	NA	NA	NA	79145409	79130218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132805_79134402_79135288_79135390_79136995_79137128_79141806_79141976_79145178
26097	chr6	+	1512	14	NNC	ENSMUSG00000030303.16	novel	3395	13	NA	NA	134007	29296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAACTCTCACGGCTG	NA	False	NA	NA	False	NA	NA	NA	148082920	148113552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_148083236_148083383_148083468_148084542_148084707_148089529_148089629_148090983_148091083_148092327_148092383_148096691_148096788_148097494_148097597_148100852_148100897_148102914_148102985_148103993_148104044_148106277_148106383_148108030_148108179_148113471
26098	chr2	+	2790	11	ISM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	320	1369	245	-1369	3prime_fragment	FALSE	canonical	1	2	junction_6	5.15363949069005	12	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGGCCTCCAGGTCCTC	3017	False	NA	NA	False	NA	NA	NA	30024077	30040656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
26099	chr11	-	2200	12	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	280.296065433535	7	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8492	False	NA	NA	False	NA	NA	NA	69572710	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571110_69571260_69571677_69572488
26100	chr1	+	3287	6	NIC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	-3	-13	intron_retention	FALSE	canonical	3	337	junction_4	44.6793016955279	1	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGATCTCAAGGAATCA	8190	False	NA	NA	False	NA	NA	NA	134333737	134339461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134337425_134338230
26101	chr5	+	2304	17	Antisense	novelGene_ENSMUSG00000025745.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGATTTCGTTCATGACT	NA	False	NA	NA	False	NA	NA	NA	30324558	30350305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30324956_30325041_30325189_30325685_30325800_30326335_30326531_30327146_30327210_30327615_30327762_30328607_30328691_30331560_30331734_30333796_30333932_30334817_30334929_30337237_30337294_30339054_30339177_30339978_30340102_30345947_30346043_30347709_30347837_30349156_30349301_30350232
26102	chr11	-	1530	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	-21	0	-21	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	3	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190936	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
26103	chr6	-	2154	14	NNC	ENSMUSG00000029782.21	novel	2273	15	NA	NA	942	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	263.232117966243	1	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	986	False	NA	-8	True	NA	NA	NA	30508761	30482413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497170_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664
26104	chr17	+	2301	20	Antisense	novelGene_ENSMUSG00000040688.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	11	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCAGCTAGGGACAAAAGG	NA	False	NA	NA	False	NA	NA	NA	24919626	24924998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24919764_24919852_24920011_24920095_24920166_24920253_24920361_24920579_24920635_24920714_24920878_24920954_24921022_24921118_24921349_24921448_24921600_24922213_24922318_24922967_24923025_24923109_24923254_24923342_24923525_24923607_24923700_24923784_24923866_24924125_24924292_24924370_24924441_24924551_24924677_24924770_24924822_24924907
26105	chr18	-	3137	8	Antisense	novelGene_ENSMUSG00000024423.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	135	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTCCAAATGCCCAAATC	NA	False	NA	NA	False	NA	NA	NA	13125975	13105372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_13105427_13107766_13107900_13109480_13109572_13117363_13117420_13118273_13118372_13119378_13119500_13122778_13122937_13123549
26106	chr5	+	1348	7	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-16	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1522.38118492782	32	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAATGCTTGAACTGAGT	740	False	NA	NA	False	NA	NA	NA	77099607	77115296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110270_77110326_77114749
26107	chr9	+	1387	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	2	149	2	-149	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	12	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64080658	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
26108	chr5	-	4185	22	ISM	ENSMUSG00000055204.16	ENSMUST00000197021.2	8067	34	44066	23977	-545	-6	internal_fragment	FALSE	canonical	3	25	junction_12	37.7169912449473	7	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGCTGTGCTTCTCAAG	6620	False	NA	NA	False	NA	NA	NA	90443536	90400576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90430709_90431463_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443
26109	chr15	-	1304	3	Fusion	ENSMUSG00000023004.9_ENSMUSG00000072235.7	novel	1743	4	NA	NA	-83623	-24	multi-exon	FALSE	canonical	0	0	junction_1	0	22	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTAAAAGCTTTAAGAAAA	2193	False	NA	NA	False	NA	NA	NA	98935207	98829329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_-_98830299_98848493_98848743_98935121
26110	chr15	+	3341	2	ISM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	-869	-1	12	1	intron_retention	FALSE	canonical	3	743	junction_1	0	4	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTACTCACCTGTGCCA	2417	False	NA	NA	False	NA	NA	NA	102367648	102371212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102368582_102368804
26111	chrX	+	1376	9	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1589.40110084742	1	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105230773	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243350_105246442_105246542_105246844
26112	chr17	-	1960	8	Antisense	novelGene_ENSMUSG00000024301.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCACCAGGTCCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	27151262	27140816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_27140833_27141647_27141692_27141782_27142275_27142980_27143761_27144413_27144705_27144797_27144872_27145191_27145268_27151075
26113	chr7	-	2539	14	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	3275	-1246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	80	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGAGCCGTTGGACCCCGCG	NA	False	NA	NA	False	NA	NA	NA	79965676	79944222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79944338_79950046_79950180_79950782_79950910_79954109_79954339_79954424_79954598_79955663_79955769_79956121_79956268_79957303_79957442_79959138_79959232_79960485_79960634_79960815_79960935_79961975_79962074_79962777_79962876_79964859
26114	chr7	-	2190	19	FSM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	2	-5	2	0	multi-exon	FALSE	canonical	3	112	junction_13	34.9573373142001	583	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	False	NA	NA	False	NA	NA	NA	30364417	30353135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
26115	chr7	-	887	5	NIC	ENSMUSG00000078762.11	novel	1788	12	NA	NA	3	-2523	intron_retention	FALSE	canonical	3	138	junction_3	34.8308412186671	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAGGAACTACCTCATAG	NA	False	NA	NA	False	NA	NA	NA	30364416	30360794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
26117	chr4	+	2038	15	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	22	126	intron_retention	FALSE	non_canonical	0	0	junction_6	333.25959728667	2	18	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCTCTATGTCTTTTAT	10003	False	NA	NA	False	NA	NA	NA	155954045	155973316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969783_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972217_155972504_155972567_155972640_155972983_155973076
26118	chrX	+	1979	11	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	38	-2053	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	237.540817545112	3	24	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGCACCCTCCCCCCCTT	NA	False	NA	NA	False	NA	NA	NA	150799461	150817155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811958_150812044_150812186_150812395_150816694_150816881_150816975
26119	chr11	-	2827	19	NIC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-36	3	combination_of_known_splicesites	FALSE	canonical	1	12	junction_6	76.5374918214661	23	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGCTTCAGGATGAGC	NA	False	NA	NA	False	NA	NA	NA	117671520	117656810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
26120	chr3	+	1921	13	NNC	ENSMUSG00000027810.15	novel	2299	14	NA	NA	0	-75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	223.754081278731	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACAGACATTTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	58433463	58464847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448563_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
26121	chr15	-	1400	3	Antisense	novelGene_ENSMUSG00000043091.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGAAAGAGGGAAGAACG	1457	False	NA	NA	False	NA	NA	NA	98935943	98931973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_98932197_98932328_98932476_98934913
26122	chr16	+	2670	13	NNC	ENSMUSG00000004069.18	novel	2648	12	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	335.409534085654	680	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	4501983	4525559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523062_4523135_4523707_4523825_4524431
26123	chr16	+	1669	12	NNC	ENSMUSG00000022841.16	novel	2937	12	NA	NA	24	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1054.32479666349	1	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	1448	False	NA	NA	False	NA	NA	NA	20354322	20362657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060_20362287_20362460
26124	chr1	-	1841	10	NNC	ENSMUSG00000003051.14	novel	1901	9	NA	NA	-23	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	195.894529445482	50	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGCTCTCTGTGTACT	NA	False	NA	NA	False	NA	NA	NA	135186199	135181311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135181885_135181972_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
26125	chr8	-	3106	24	NNC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-14	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	117.415601350305	3	73	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGAGACTATCTTCTT	NA	False	NA	NA	False	NA	NA	NA	73175318	73094841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136650_73138610_73138762_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
26127	chr11	-	4972	20	NIC	ENSMUSG00000018363.17	novel	2358	20	NA	NA	10	-19	combination_of_known_junctions	FALSE	canonical	3	9	junction_16	13.0135237562321	139	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCAGCGAGGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	106811091	106710910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106713591_106713845_106713922_106715434_106715637_106719329_106719451_106721745_106721884_106724570_106724750_106726895_106727011_106730013_106730118_106732425_106732622_106736808_106736968_106740573_106740659_106743272_106743476_106747006_106747091_106750537_106750623_106755537_106755604_106759360_106759495_106759822_106759935_106762327_106762437_106766726_106766766_106811006
26128	chr4	+	3633	31	NNC	ENSMUSG00000053510.13	novel	4311	31	NA	NA	14	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	184.073668827335	22	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACGTGTATTTAAAGACG	9954	False	NA	NA	False	NA	NA	NA	108857865	108918349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884723_108885947_108886071_108889646_108889705_108890486_108890554_108891902_108891948_108895171_108895249_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
26129	chr14	-	2467	6	NNC	ENSMUSG00000023156.5	novel	2401	6	NA	NA	158	9	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	87.8621647809795	27	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATACCTTTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	14389248	14377929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389045
26130	chr10	+	2711	5	ISM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	301	5	301	-5	intron_retention	FALSE	canonical	3	1125	junction_1	73.8867376462109	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAACGAGATGTCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	88567230	88579951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768
26131	chr1	+	1915	15	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	176.57928785098	30	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	131080961	131101215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094142_131095888_131095978_131098673_131098849_131101040
26134	chr4	+	3143	13	FSM	ENSMUSG00000042228.15	ENSMUST00000103010.4	3387	13	-22	266	-10	-266	multi-exon	FALSE	canonical	3	9	junction_2	11.3023473471468	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCTCATTTTTTTCTCA	15	False	NA	NA	False	NA	NA	NA	3678104	3791346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_3678365_3738724_3738799_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
26135	chr4	+	1568	6	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	63	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	855.056582923025	7	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2932	False	NA	NA	False	NA	NA	NA	128887079	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892926_128893057_128896209_128896262_128901505_128901579_128901826_128902023_128904355
26136	chr8	+	2119	13	NNC	ENSMUSG00000003573.16	novel	2608	10	NA	NA	1790	8110	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1701	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCGGCGCGTGAATGCT	2404	False	NA	NA	False	NA	NA	NA	70745515	70755121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70746337_70746476_70746550_70746648_70746738_70747336_70747414_70748018_70748121_70748230_70748304_70749034_70749112_70749555_70749694_70749780_70749972_70750528_70750648_70750730_70750819_70753630_70753751_70754970
26137	chrX	+	2302	6	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	65.7157515364467	42	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	133618700	133622666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619115_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620823
26138	chr5	+	2792	14	FSM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	5	2	0	-2	multi-exon	FALSE	canonical	3	73	junction_5	12.5669803088427	329	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTATCATTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	124690931	124707721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
26139	chr2	+	4047	20	NIC	ENSMUSG00000026991.21	novel	4484	21	NA	NA	13984	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	24.8888943850849	146	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGTGTTCTTGCAGTT	NA	False	NA	NA	False	NA	NA	NA	59045101	59185547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_59045159_59096731_59096845_59119561_59119597_59135409_59135542_59135648_59135837_59138428_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59182605_59182680_59184546
26140	chr15	-	3104	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	13	1	0	-1	multi-exon	TRUE	canonical	3	163	junction_7	20.0690167197789	393	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTGAGCTGCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	9140439	9112073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
26141	chr6	+	1863	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-8	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1771.26644238448	1	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTGTGTTTTTCATAAAC	5107	False	NA	NA	False	NA	NA	NA	85428992	85445370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445028
26142	chr11	-	3415	17	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	105.074954645482	9	72	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3543	False	NA	NA	False	NA	NA	NA	115494715	115475080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115477969_115478411_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
26144	chr19	-	1644	4	Antisense	novelGene_ENSMUSG00000011752.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	107	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCCCCGAAATCTTT	9931	False	NA	NA	False	NA	NA	NA	41907096	41900373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41900568_41904101_41904317_41905079_41905262_41906043
26145	chr2	+	3621	7	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	231	junction_2	20.763884243775	107	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACATGCCATCTAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	25390887	25395480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25394340_25394428_25394642_25394721
26146	chrX	+	3465	2	ISM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	1971	8	1752	-8	intron_retention	FALSE	canonical	3	790	junction_1	0	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	143102770	143108185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_143103058_143105007
26148	chr9	+	1343	8	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	5	56	combination_of_known_splicesites	FALSE	canonical	1	110	junction_2	6696.1172483822	605	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGGGCCAAGTCCTATGA	NA	False	NA	NA	False	NA	NA	NA	64080661	64086004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64080716_64082105_64082278_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
26151	chr1	+	1546	10	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	18	13178	18	-3574	5prime_fragment	FALSE	canonical	3	1402	junction_6	140.667544318835	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGAGCCTGGTGAAGTG	3165	False	NA	NA	False	NA	NA	NA	180396511	180415641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485
26152	chr4	+	2540	5	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	36.1317035302793	2	114	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147637744	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147661528_147661587_147665716_147665826_147667290_147668830_147668961
26155	chr6	-	2603	7	NIC	ENSMUSG00000029922.16	novel	2992	8	NA	NA	64	-16	combination_of_known_splicesites	FALSE	canonical	3	82	junction_4	1408.98131049824	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTGG	NA	False	NA	NA	False	NA	NA	NA	39396937	39374753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39382664_39382895_39387021_39387151_39396773
26156	chr11	+	2853	20	NNC	ENSMUSG00000020363.7	novel	2947	19	NA	NA	-15	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	146.887429337935	8	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGACTTGTTTGAATTTA	NA	False	NA	NA	False	NA	NA	NA	49684989	49729442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720620_49720695_49723687_49723856_49726438_49726474_49726539_49726601_49728547
26157	chr3	-	1757	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	5	27	5	-27	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	3427	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCATAAAATCCTTAAGTAA	NA	False	NA	NA	False	NA	NA	NA	131065745	131027094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
26158	chr16	-	1938	3	FSM	ENSMUSG00000071533.12	ENSMUST00000140227.2	446	3	24	-1516	4	-10	multi-exon	FALSE	canonical	3	12	junction_2	806	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAACTTGGTGGTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	55850045	55835878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_55837681_55838834_55838891_55849965
26159	chr10	+	2856	11	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	3	0	intron_retention	FALSE	canonical	3	717	junction_1	92.6846265569431	1	104	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCATAAATTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	21870584	21875790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
26160	chr19	-	2624	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236978.2	2731	17	31	76	10	0	multi-exon	FALSE	canonical	3	227	junction_12	26.041358331508	297	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTCCCAGCTCAGTC	9920	False	NA	NA	False	NA	NA	NA	5821416	5808454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
26161	chr6	+	3092	14	NNC	ENSMUSG00000049553.12	novel	9216	34	NA	NA	0	-3122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	106.84341249183	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATAATCAAGACTTAAGT	NA	False	NA	NA	False	NA	NA	NA	71886044	71956337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71886224_71889859_71890069_71941781_71941872_71942539_71942755_71943359_71943528_71944295_71944432_71944842_71945001_71949681_71949809_71951084_71951196_71951727_71952004_71953002_71953204_71954317_71954436_71954927_71955093_71955398
26162	chr6	-	3351	15	FSM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	13	25	0	-25	multi-exon	FALSE	canonical	3	113	junction_14	18.9118524546197	159	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGAGACTTGTTGGCAC	6193	False	NA	NA	False	NA	NA	NA	142332800	142307126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
26163	chr4	+	2128	3	Intergenic	novelGene_1806	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	63	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTCTTGGTTTCTGTTAG	NA	False	NA	NA	False	NA	NA	NA	17714984	17730725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_17716556_17716687_17717049_17730529
26164	chr3	-	1975	4	ISM	ENSMUSG00000027506.16	ENSMUST00000145905.8	698	6	14690	-1630	14690	164	3prime_fragment	FALSE	canonical	0	0	junction_1	1097.39762873607	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	9012623	8994493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540
26165	chr2	+	2081	16	NIC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	278.954476572791	22	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGTGCCAAACCCTGC	7225	False	NA	NA	False	NA	NA	NA	29779828	29812537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
26166	chr13	-	2173	16	NIC	ENSMUSG00000021494.10	novel	2199	17	NA	NA	-12	0	intron_retention	FALSE	canonical	3	642	junction_9	46.138728008282	963	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTTCCTCTCTCACC	NA	False	NA	NA	False	NA	NA	NA	55684346	55678228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
26167	chr10	+	878	1	NIC	ENSMUSG00000040034.16	novel	1286	8	NA	NA	4	130	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGCAAGACCTTATCTT	NA	False	NA	NA	False	NA	NA	NA	7543307	7544185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7543300_7544200
26168	chr5	-	5287	15	NNC	ENSMUSG00000040351.12	novel	6426	20	NA	NA	-30976	-1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_14	19.9700030147259	53	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTCATTCTCTGCCTTCT	NA	False	NA	NA	False	NA	NA	NA	3783108	3740000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_3743497_3743771_3743906_3744778_3744894_3750355_3750408_3751804_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3782853
26170	chr4	+	931	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACCCCATTTGATGTTA	NA	False	NA	NA	False	NA	NA	NA	91739713	91740644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739700_91740600
26172	chr2	-	2848	13	Antisense	novelGene_ENSMUSG00000088891.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCGTCCCGGAGGTGCTC	NA	False	NA	NA	False	NA	NA	NA	31082769	31042316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_31042494_31057032_31057151_31058170_31058224_31058805_31058892_31061953_31062090_31064207_31064250_31066907_31066964_31067793_31067908_31068265_31068398_31073589_31073668_31074809_31075608_31078678_31078825_31081857
26173	chr7	-	918	2	FSM	ENSMUSG00000030717.10	ENSMUST00000131174.2	2449	2	1535	-4	0	1	multi-exon	FALSE	canonical	3	3748	junction_1	0	176	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGGCGTGTGTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	126224647	126222419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126222752_126224061
26175	chr10	-	1704	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	1051	-1561	1051	1561	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGACATAAAA	3513	False	NA	NA	False	NA	NA	NA	41930251	41928547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41928500_41930300
26176	chr17	-	2581	19	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-852	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	220.053023913177	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTGTGGGGTGCTTCC	NA	False	NA	-30	True	NA	NA	NA	36276016	36267707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36272895_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968
26177	chr1	+	1804	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	687.17971389126	1	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724169	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729726_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742024_59743302_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
26178	chr11	+	2394	9	FSM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	-8	0	-1	0	multi-exon	FALSE	canonical	3	125	junction_1	20.9388992069784	510	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3563	False	NA	NA	False	NA	NA	NA	100973442	100977445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
26179	chr1	+	3397	18	Antisense	novelGene_ENSMUSG00000099141.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	77	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTAGGAGTGCAGCAGTC	NA	False	NA	NA	False	NA	NA	NA	77346014	77491724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77346311_77350299_77350485_77351407_77351564_77354050_77354241_77357496_77357653_77359508_77359716_77360159_77360222_77364431_77364622_77365110_77365223_77366671_77366716_77375114_77375243_77376274_77376433_77377833_77377959_77403173_77403526_77421500_77421658_77483184_77483848_77488318_77488388_77491577
26180	chr10	+	2792	9	NIC	ENSMUSG00000063334.17	novel	5023	10	NA	NA	3	895	intron_retention	FALSE	canonical	3	346	junction_5	31.6780681229143	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTATAACAGACAGTAATAG	NA	False	NA	NA	False	NA	NA	NA	111808682	111821481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815963_111818705_111818784_111818868_111818963_111820443
26181	chr5	+	2012	14	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-6	551	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	273.456399389124	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTAACTTTGTGGTAAGC	NA	False	NA	NA	False	NA	NA	NA	31652104	31668754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652610_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
26182	chr11	-	4836	3	Antisense	novelGene_ENSMUSG00000020522.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	108	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAGAGGATGCTTGACC	NA	False	NA	NA	False	NA	NA	NA	57424641	57409516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57409573_57418682_57419114_57420292
26183	chr15	-	1251	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	9979.59910993732	8	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGTTTTCCCACATTTC	3574	False	NA	NA	False	NA	NA	NA	79967551	79961994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965217_79965840_79965985_79966590_79966784_79967524
26184	chr1	+	2560	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	606.701362459222	1	99	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	4928019	4968128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965225_4966578
26185	chr13	-	3982	4	NNC	ENSMUSG00000041431.17	novel	2140	8	NA	NA	-13	-181	intron_retention	FALSE	non_canonical	0	0	junction_1	1774.47400657209	5	92	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACCCCCCCCCCAACACA	NA	False	NA	NA	False	NA	NA	NA	100923007	100916366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916791_100918857_100922127_100922240_100922412_100922889
26186	chr15	-	2247	6	ISM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	54	6463	16	-1480	5prime_fragment	FALSE	canonical	3	264	junction_5	27.5492286643383	11	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTCAAAACCAGCATGGT	NA	False	NA	NA	False	NA	NA	NA	12824681	12814725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
26187	chr3	-	1693	10	NIC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	14	40	combination_of_known_splicesites	FALSE	canonical	2	59	junction_5	835.978335710787	19	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTCTCTGCTGGGTCTCC	NA	False	NA	NA	False	NA	NA	NA	108352500	108333887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
26188	chr4	+	2188	20	ISM	ENSMUSG00000017264.17	ENSMUST00000017408.14	2790	25	4512	0	-134	0	3prime_fragment	FALSE	canonical	3	495	junction_14	47.5464490781867	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	4105	False	NA	NA	False	NA	NA	NA	148647397	148666858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
26189	chr14	-	1990	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	-43	0	-43	0	multi-exon	FALSE	canonical	3	775	junction_10	82.9678140200482	2858	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741152	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
26190	chr7	+	2467	4	Antisense	novelGene_ENSMUSG00000030942.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	164	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTTGAGCAGGCTGTAGG	NA	False	NA	NA	False	NA	NA	NA	119314315	119319763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_119316292_119317243_119317494_119318349_119318559_119319731
26191	chr4	-	1221	8	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	12222	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	216.504324319353	1	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	7035	False	NA	NA	False	NA	NA	NA	129216215	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129215929_129216145
26192	chr5	+	4780	10	ISM	ENSMUSG00000037795.15	ENSMUST00000201489.4	9055	20	44803	1	-1407	-1	3prime_fragment	FALSE	canonical	3	78	junction_3	12.7366487830285	91	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAGTGTGAAGAAATCCT	9966	False	NA	NA	False	NA	NA	NA	65965666	65987450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65965887_65966497_65966584_65967106_65967153_65969305_65969494_65972094_65972214_65974504_65974641_65977612_65977802_65979150_65979320_65982614_65982739_65983947
26193	chr15	+	2780	8	NIC	ENSMUSG00000009585.19	novel	2459	9	NA	NA	2	-27	intron_retention	FALSE	canonical	3	242	junction_5	150.781501599134	8	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAATAAAGTGGACA	8300	False	NA	NA	False	NA	NA	NA	79776657	79792260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79790804_79791051_79791165_79791504
26194	chrX	-	2772	11	NNC	ENSMUSG00000031392.19	novel	3835	14	NA	NA	3	-356	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	111.995714203714	12	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGAATTTGTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	73066547	73057887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066196_73066454
26195	chr14	+	1534	3	FSM	ENSMUSG00000022010.20	ENSMUST00000101618.9	1043	3	98	-589	98	-3	multi-exon	FALSE	canonical	2	49	junction_1	1143	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	3878	False	NA	NA	False	NA	NA	NA	76725973	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76726116_76742688_76742738_76743856
26196	chr18	-	1852	13	NNC	ENSMUSG00000001380.8	novel	1989	13	NA	NA	41	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	196.763958985266	2	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTCTGTGTCCTTGATG	NA	False	NA	NA	False	NA	NA	NA	36916217	36899581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_36900007_36900242_36900390_36901139_36901180_36903152_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
26197	chr4	-	1757	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	3	5	3	-5	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	2	True	NA	NA	False	NA	NA	NA	41098180	41092726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
26199	chr5	-	4126	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	432	2	-87	-2	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	709	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCGTTTTCTGTTTGAC	NA	False	NA	NA	False	NA	NA	NA	65650311	65604188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
26200	chr8	-	2639	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	238	2	238	-2	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	1458	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTAGCTTGTGGGTGTT	9024	False	NA	NA	False	NA	NA	NA	34613949	34602727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
26203	chr8	+	2408	12	NNC	ENSMUSG00000047866.21	novel	2371	13	NA	NA	27	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	75.8381268729872	17	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTCTCCAGTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	87350698	87443264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_87351045_87358013_87358249_87360496_87360582_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
26204	chr1	-	3014	14	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	5	-3	combination_of_known_junctions	FALSE	canonical	3	28	junction_13	31.3627374725987	272	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGTGGAATTTTAAAATA	975	False	NA	NA	False	NA	NA	NA	150268489	150237058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268354
26205	chr7	+	2820	3	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-107	2	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	427.5	10	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGACTCATGCTTTCTTT	2683	False	NA	NA	False	NA	NA	NA	3341511	3347867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3341614_3341727_3341816_3345237
26206	chr6	-	1622	7	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	11	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1224.21416971596	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTGTGTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	83294577	83282964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286054_83286482_83286537_83287393_83287502_83288191_83288345_83290354_83290529_83294410
26207	chr3	-	4029	24	Antisense	novelGene_ENSMUSG00000065606.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	137	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCCTAAAATCCAAACTCG	NA	False	NA	NA	False	NA	NA	NA	68941939	68912321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_68912421_68913405_68913547_68914521_68914699_68915259_68915452_68916814_68916992_68923423_68923589_68923982_68924113_68925403_68925545_68926507_68926661_68928569_68928732_68929556_68929791_68931491_68931684_68933155_68933317_68934823_68935049_68935148_68935230_68935775_68935930_68936733_68936860_68937580_68937759_68938739_68938884_68939067_68939231_68940038_68940219_68940356_68940590_68941266_68941455_68941706
26209	chr12	-	3998	13	NNC	ENSMUSG00000042628.9	novel	4420	13	NA	NA	-9270	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	45.8675629757385	4	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTTAAAAAGCTTGGC	NA	False	NA	NA	False	NA	NA	NA	83653266	83593635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83651973_83652098_83653189
26210	chr5	-	3096	14	ISM	ENSMUSG00000029467.16	ENSMUST00000177974.8	3984	21	32108	21	31830	-21	3prime_fragment	FALSE	canonical	3	23	junction_1	334.810517816028	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTCTACGATAAACCCT	6665	False	NA	NA	False	NA	NA	NA	122607850	122591597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_122592368_122595365_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412
26211	chr10	-	2544	3	NIC	ENSMUSG00000004667.19	novel	2403	4	NA	NA	-2	-24	intron_retention	FALSE	canonical	3	2815	junction_1	97	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAAGGATACTTTGAT	5598	False	NA	NA	False	NA	NA	NA	79875546	79871808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79872136_79872360_79874448_79875416
26212	chr16	+	3338	20	NIC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	5	228	intron_retention	FALSE	canonical	3	293	junction_13	17.9604058218437	439	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGTCTCAGCCTACTGG	NA	False	NA	NA	False	NA	NA	NA	20367398	20380357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
26213	chr10	+	2426	10	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	85	7	intron_retention	FALSE	non_canonical	0	0	junction_2	217.94789274186	4	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGTTTGTAAAATGTAT	1093	False	NA	NA	False	NA	NA	NA	127851149	127865859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851897_127855334_127856136_127857541_127857601_127858731_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
26214	chr15	+	1259	12	FSM	ENSMUSG00000058586.13	ENSMUST00000078218.11	1371	12	72	40	-13	-23	multi-exon	FALSE	canonical	3	56	junction_2	9.92534113742268	397	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCACCAGTGGTGGAAAT	NA	False	NA	NA	False	NA	NA	NA	82984476	83000835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
26215	chr5	-	2063	9	Antisense	novelGene_ENSMUSG00000029247.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAAGTACCGGGCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	77115347	77099524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77099691_77104400_77104594_77107167_77107339_77108954_77109122_77109265_77109352_77110271_77110356_77112286_77112475_77114093_77114247_77114492
26216	chr14	+	3232	10	NIC	ENSMUSG00000022070.8	novel	3834	13	NA	NA	13	0	intron_retention	FALSE	canonical	2	10	junction_3	100.644589190544	4	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCGTTTTCCTTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	99283928	99311975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_99284117_99284736_99284905_99287428_99287536_99294174_99294257_99297675_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
26217	chr13	+	3048	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2859	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	106.629681087814	4	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGGGAGTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	35922436	36058041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35922622_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36055560_36055705_36056494
26218	chr1	+	2917	1	Genic_Genomic	ENSMUSG00000067017.6	novel	NA	NA	NA	NA	5	63	mono-exon	FALSE	NA	NA	NA	NA	NA	1	126	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	105383700	105386617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_105383700_105386600
26220	chr19	-	3224	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	-96	22	-96	-22	multi-exon	FALSE	canonical	3	359	junction_1	25.8738196920081	350	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGTAATTTTATTCT	9775	False	NA	NA	False	NA	NA	NA	10079206	10040150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
26222	chr5	-	1939	7	ISM	ENSMUSG00000106864.4	ENSMUST00000202639.4	4200	21	20025	93	-711	-93	3prime_fragment	FALSE	canonical	3	609	junction_2	19.4992877362796	8	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCAATCATTCTTTTACA	NA	False	NA	NA	False	NA	NA	NA	31317436	31313957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291
26223	chr13	-	3444	19	NIC	ENSMUSG00000021597.17	novel	3747	21	NA	NA	-1	-3	combination_of_known_splicesites	FALSE	canonical	2	3	junction_13	34.6410161513775	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTTCATAGTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	77283580	77191209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
26224	chr4	+	3414	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-12	28	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	24.9131825880731	115	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTTGTATTTGTGTAAC	42	False	NA	NA	False	NA	NA	NA	12089426	12096271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_12089569_12089662_12089728_12092522_12092573_12093114
26225	chr7	+	2804	20	NIC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	1	2	junction_11	111.661067099581	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	980	False	NA	NA	False	NA	NA	NA	97130209	97190605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
26226	chr5	-	2650	8	NIC	ENSMUSG00000028959.15	novel	2552	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	1095	junction_1	125.764762593519	15	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	24650185	24646037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647394_24648001_24648142_24648274_24648455_24648892
26228	chr11	-	1332	1	NIC	ENSMUSG00000020439.18	novel	1747	9	NA	NA	3457	-243	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGACCCCAAGTGCGTCTTC	2412	False	NA	NA	False	NA	NA	NA	3469097	3467765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_3467800_3469100
26229	chr9	-	3034	19	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	-14013	-29	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_18	141.067458252347	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAACATTTTATTTCTT	1450	False	NA	NA	False	NA	NA	NA	31028847	31000726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31028735
26230	chr10	+	3140	10	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_5	304.969215204129	1	144	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGCATAAATTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	21870581	21875790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872005_21872121_21872254_21872457_21873002_21873240_21873337_21873796_21873953_21874058
26232	chr12	-	2293	3	NNC	ENSMUSG00000045690.9	novel	2381	3	NA	NA	-1	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	74	241	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGGTATCTTGTCTTAT	6409	False	NA	NA	False	NA	NA	NA	75716312	75677367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_75677667_75678355_75680283_75716245
26233	chr14	+	2047	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-18	16958	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	27.98548731039	383	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTATTTCTGTACAATGTA	NA	False	NA	NA	False	NA	NA	NA	43132474	43180426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_43132821_43157302_43157435_43158114_43158297_43162337_43163709_43180410
26234	chr17	-	1926	12	NIC	ENSMUSG00000023942.16	novel	2033	13	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	2	106	junction_11	693.390150511562	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45910505	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45910398
26236	chr15	+	2592	16	ISM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	23825	-1	20011	1	3prime_fragment	FALSE	canonical	3	200	junction_4	37.4619214076848	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57799419	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
26237	chr4	+	1687	8	ISM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	896	1862	14	-798	3prime_fragment	FALSE	canonical	3	1814	junction_1	386.53790373055	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGACTTTGCCCTGTAT	281	False	NA	NA	False	NA	NA	NA	40723375	40733102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
26239	chr5	+	3743	25	NIC	ENSMUSG00000029414.12	novel	6961	64	NA	NA	3739	-11	intron_retention	FALSE	canonical	3	303	junction_12	75.0610746696019	23	34	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGCTTTGATGTTGGT	NA	False	NA	NA	False	NA	NA	NA	123929013	123959643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_123929120_123929562_123929668_123932206_123932336_123934098_123934216_123934575_123934686_123935676_123935882_123937863_123937954_123939857_123940030_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123958024_123959443
26240	chr4	+	3504	3	FSM	ENSMUSG00000052137.12	ENSMUST00000095143.9	3147	3	-11	-346	-11	25	multi-exon	FALSE	canonical	3	33	junction_1	14.5	101	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTAACTTGTATTTGTGT	43	False	NA	NA	False	NA	NA	NA	12089427	12096268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_12089728_12092522_12092573_12093114
26241	chr3	-	3163	2	Antisense	novelGene_ENSMUSG00000047213.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAATTCCCACATTGCCC	NA	False	NA	NA	False	NA	NA	NA	16270331	16258638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_16259588_16268117
26242	chr2	-	1388	7	FSM	ENSMUSG00000027639.17	ENSMUST00000149313.8	1375	7	-221	208	-38	-208	multi-exon	FALSE	canonical	1	2	junction_1	78.9887474405198	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATAATTACACATTTA	NA	False	NA	NA	False	NA	NA	NA	156977078	156961691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156962312_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
26243	chr14	-	2818	9	NNC	ENSMUSG00000022159.17	novel	1573	9	NA	NA	-15	1	intron_retention	FALSE	canonical	0	0	junction_2	63.3925025140986	195	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTATTTCATGTGTCATT	NA	False	NA	NA	False	NA	NA	NA	52516811	52499221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52501275_52502155_52502225_52503114_52503224_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
26244	chr8	-	2096	2	NIC	ENSMUSG00000003809.15	novel	408	4	NA	NA	4	-801	intron_retention	FALSE	canonical	3	277	junction_1	0	2	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTCAAAACAAACAAACAAGC	NA	False	NA	NA	False	NA	NA	NA	85620542	85618366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85620104_85620183
26245	chr1	-	4535	5	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	17	613	intron_retention	FALSE	canonical	3	104	junction_4	71.052797270762	2	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTCAACATGAAAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	194813825	194796349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
26246	chr3	-	3976	17	FSM	ENSMUSG00000027615.15	ENSMUST00000012580.13	4016	17	26	14	5	-8	multi-exon	FALSE	canonical	3	23	junction_7	9.33324032691755	74	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTATGAACATAGTGGAG	NA	False	NA	NA	False	NA	NA	NA	20089453	20050122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
26247	chr4	+	1902	8	FSM	ENSMUSG00000054405.15	ENSMUST00000142281.8	1837	8	-6	-59	-6	-22	multi-exon	TRUE	canonical	3	2684	junction_7	240.501516818162	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTTTATACCCAAGCC	2342	False	NA	NA	False	NA	NA	NA	132262871	132281031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
26248	chr9	-	3275	2	FSM	ENSMUSG00000032330.8	ENSMUST00000215452.2	344	2	-30	-2901	-30	0	multi-exon	FALSE	canonical	3	5621	junction_1	0	12	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCTCCCTTTTCACT	NA	False	NA	NA	False	NA	NA	NA	79667022	79662687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_79665862_79666921
26251	chr3	+	3082	12	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	-10	-10	combination_of_known_junctions	TRUE	canonical	3	123	junction_1	129.584906273394	11	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTTTACCTCGGCCTC	NA	False	NA	NA	False	NA	NA	NA	89325739	89337312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
26256	chr9	-	1592	1	Intergenic	novelGene_1123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATATATTGACTGATATT	NA	False	NA	NA	False	NA	NA	NA	88300947	88299355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_88299400_88300900
26257	chr5	+	3175	3	Antisense	novelGene_ENSMUSG00000047215.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGTCTTTCGTCATCAC	3139	False	NA	NA	False	NA	NA	NA	65545092	65548741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_65548198_65548288_65548335_65548717
26259	chr4	+	2381	16	NNC	ENSMUSG00000028274.18	novel	4157	16	NA	NA	16	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	77.567060592038	1	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAAGTTCTTCTGGTTTT	-3	True	NA	NA	False	NA	NA	NA	33310343	33500913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368614_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
26261	chr6	+	6247	30	Antisense	novelGene_ENSMUSG00000007827.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	45	34	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGTAAGACATCACAGGC	NA	False	NA	NA	False	NA	NA	NA	118478268	118533261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_118480118_118482686_118482733_118483336_118483568_118484599_118484820_118485456_118485743_118488528_118488657_118492741_118492855_118494856_118494950_118495300_118495373_118498801_118498958_118499901_118500863_118501910_118502042_118502691_118502878_118504616_118504831_118506394_118506539_118506805_118506837_118509161_118509331_118510275_118510426_118512037_118512105_118516646_118516760_118517396_118517511_118519850_118519947_118525276_118525337_118525790_118525920_118526345_118526499_118526598_118526660_118528929_118529001_118529704_118529743_118531166_118531227_118533156
26262	chr17	-	3711	18	NNC	ENSMUSG00000007670.11	novel	3978	18	NA	NA	264	-5	intron_retention	TRUE	canonical	0	0	junction_10	169.028406121943	716	15	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTCCCTGTGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	57338224	57328055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57329971_57330058_57330137_57330212_57330414_57330504_57330594_57330826_57330937_57331010_57331172_57331246_57331493_57331788_57331892_57331979_57332079_57332307_57332407_57332493_57332671_57332879_57332938_57333842_57333915_57334048_57334099_57334816_57334857_57334955_57334995_57336041_57336139_57338147
26263	chr11	-	846	1	Intergenic	novelGene_2399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAATGCCTCTGGATACC	NA	False	NA	NA	False	NA	NA	NA	69863557	69862711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_69862700_69863600
26264	chr11	+	2105	14	NNC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	172.060537028009	1	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGCTACACTCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	50268595	50277346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50271652_50271730_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
26265	chr3	+	1919	12	ISM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	11757	0	-5702	0	3prime_fragment	FALSE	canonical	3	611	junction_4	70.4470963804027	1	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	58444998	58464922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
26267	chr3	+	2868	15	NNC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_14	88.6413318620931	42	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGTGTTTACCTGAGAT	NA	False	NA	NA	False	NA	NA	NA	95466989	95494906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95493210
26268	chr3	+	4091	11	Antisense	novelGene_ENSMUSG00000027742.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	40	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCTAAAGAAAACCACCTG	NA	False	NA	NA	False	NA	NA	NA	52889542	52909755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_52890612_52893820_52893901_52896529_52896584_52897378_52897488_52900175_52900342_52900858_52901021_52901295_52901948_52901999_52903546_52905669_52905768_52907899_52907966_52909666
26269	chr6	-	1952	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	8910	-265	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	387.26600677054	35	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	120884849	120870079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120884701
26270	chr9	+	2367	10	NIC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	1	13	junction_1	600.552050560231	1	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTGAGGCGTTTGCATT	NA	False	NA	NA	False	NA	NA	NA	54493764	54511942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_54493828_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
26271	chr4	+	2614	10	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-122	-2	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_5	95.5092911258273	1	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99607266	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99650107
26272	chr14	+	2459	4	NIC	ENSMUSG00000079271.5	novel	1761	5	NA	NA	28	-2	intron_retention	FALSE	canonical	1	1	junction_1	7.87400787401181	2	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAATTTAAAAGCTCTAGA	NA	False	NA	NA	False	NA	NA	NA	41746933	41754996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_41747953_41748897_41749030_41749709_41749892_41753870
26274	chr2	+	2599	8	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	2	4	intron_retention	FALSE	canonical	0	0	junction_6	254.644530148782	21	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1938	False	NA	NA	False	NA	NA	NA	5850065	5873551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
26275	chr15	-	3724	20	NNC	ENSMUSG00000115829.2	novel	1426	3	NA	NA	-197325	-3096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGGTACCTGGCGTCCGC	NA	False	NA	NA	False	NA	NA	NA	35570618	35371694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_35371920_35372074_35372252_35379032_35379177_35417654_35417776_35422451_35422621_35423260_35423442_35430253_35430435_35438862_35439125_35445715_35445810_35446181_35446307_35446768_35446905_35447828_35447922_35448677_35448866_35452238_35452412_35455100_35455296_35456758_35456885_35472027_35472209_35533439_35533574_35534329_35534504_35569973
26277	chr10	+	952	8	ISM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	4869	2532	-483	60	3prime_fragment	FALSE	canonical	3	1673	junction_3	37.9656127976626	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGATGGACAATTCTTAA	7155	False	NA	NA	False	NA	NA	NA	79800854	79803505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
26278	chr3	-	2788	12	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	-17	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	187.613943339873	11	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTTTCAAGTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	157737109	157716125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718511_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
26279	chr9	+	2450	10	NIC	ENSMUSG00000040188.11	novel	2340	9	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_3	104.968190360958	557	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGCCCTGATGTCAAT	NA	False	NA	NA	False	NA	NA	NA	57468244	57496078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57468394_57484475_57484545_57484921_57485021_57485556_57485686_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
26280	chr7	+	1856	2	Genic_Genomic	ENSMUSG00000063902.14	novel	1378	1	NA	NA	-65	508	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTAAAAAAAAAAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	83405046	83406997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_83406502_83406596
26282	chr11	-	2948	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	-34	2377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.1068669888635	95	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGACTCGGGTGGTGTG	2856	False	NA	NA	False	NA	NA	NA	95805751	95754391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95755698_95756882_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
26283	chr12	-	3220	15	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	57130	4899	-7175	-4899	internal_fragment	FALSE	canonical	3	48	junction_14	29.843469186092	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCTGGTTTAATGGGATT	NA	False	NA	NA	False	NA	NA	NA	51819189	51795403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056
26284	chr8	+	1156	7	ISM	ENSMUSG00000031585.14	ENSMUST00000171010.8	1664	8	3529	197	2425	-188	3prime_fragment	FALSE	canonical	3	1161	junction_5	81.0440552347234	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAGGAAATTCAGTTTGT	9060	False	NA	NA	False	NA	NA	NA	34225895	34267004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
26285	chr11	+	2728	3	FSM	ENSMUSG00000018599.6	ENSMUST00000154890.2	716	3	-58	-1954	-13	-1	multi-exon	FALSE	canonical	3	114	junction_2	20.5	267	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATGTGTAATTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	60619210	60623776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60619394_60621108_60621619_60621741
26286	chr6	-	3308	16	Antisense	novelGene_ENSMUSG00000029629.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCCCACACGCGCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	12007605	11907841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_11908016_11926723_11926835_11933249_11934017_11941426_11941572_11953284_11953445_11961546_11961659_11962648_11962787_11986338_11986486_11987000_11987273_11987573_11987680_11988718_11988815_11990025_11990130_11991982_11992114_11997021_11997193_12006808_12006859_12006981
26287	chr9	+	3709	21	FSM	ENSMUSG00000032212.11	ENSMUST00000049263.9	3691	21	-59	41	17	-41	multi-exon	FALSE	canonical	3	132	junction_6	54.986612006924	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGTAATCTTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	70450092	70499473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
26288	chr3	-	2843	3	FSM	ENSMUSG00000068732.6	ENSMUST00000090546.6	2864	3	21	0	21	0	multi-exon	FALSE	canonical	3	163	junction_1	15	313	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5295	False	NA	NA	False	NA	NA	NA	108469761	108463740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108466277_108467502_108467635_108469586
26289	chr19	+	3590	10	Antisense	novelGene_ENSMUSG00000024982.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCGGTCGGTGCGCGGC	2564	False	NA	NA	False	NA	NA	NA	55288977	55304462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_55291037_55291122_55291267_55292126_55292171_55292841_55293012_55297337_55297390_55298174_55298337_55300056_55300217_55301620_55301712_55302731_55303204_55304226
26290	chr11	+	1249	1	Antisense	novelGene_ENSMUSG00000041278.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTTCTGCTCGCAAGGAG	NA	False	NA	NA	False	NA	NA	NA	43620832	43622081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_43620800_43622100
26291	chr11	+	2483	7	Antisense	novelGene_ENSMUSG00000041278.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGTCAGGTGCACTTC	NA	False	NA	NA	False	NA	NA	NA	43625623	43638831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_43627301_43628693_43628845_43629625_43629663_43630545_43630657_43632587_43632649_43635911_43636275_43638748
26292	chr9	-	2608	11	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	-277	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.5918870539741	7	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTAACAGCCAGCTAACAA	NA	False	NA	NA	False	NA	NA	NA	13738680	13719098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719532_13719636_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
26293	chr13	-	2807	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	107	1330	5	-32	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	313	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGACATACATGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	14237966	14226573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
26294	chr7	+	2041	4	NIC	ENSMUSG00000006333.15	novel	1347	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	206	junction_2	3881.10124692579	78	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1309	False	NA	NA	False	NA	NA	NA	3707036	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3708919_3709006_3709181_3709649
26295	chr17	-	2306	6	NIC	ENSMUSG00000024097.12	novel	1898	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	229	junction_3	791.57817049234	48	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	NA	False	NA	NA	NA	80514732	80508738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80513458_80514603
26296	chr3	-	1179	7	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	-8	-279	intron_retention	FALSE	canonical	2	4	junction_1	82.4856889944485	83	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCGGATATAACATCTCTAA	NA	False	NA	NA	False	NA	NA	NA	96634778	96624045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_96624122_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631369_96633149_96633316_96634664
26297	chr7	+	1779	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	-100	0	-100	0	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	2952	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	126086432	126089899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
26298	chr1	+	3413	21	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	27	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	761.801082960637	1	160	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTTTATCTATTTGGT	NA	False	NA	NA	False	NA	NA	NA	185095281	185160547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118527_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185160284
26299	chr6	-	6990	34	NNC	ENSMUSG00000007827.11	novel	6930	34	NA	NA	-41	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	16.0055660658171	23	85	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAATCCTATATTTAT	NA	False	NA	NA	False	NA	NA	NA	118539228	118478268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_118480118_118482686_118482733_118483336_118483566_118484598_118484814_118485450_118485742_118488526_118488657_118492741_118492855_118494856_118494951_118495301_118495373_118498801_118498955_118499895_118500857_118501905_118502044_118502693_118502878_118504616_118504831_118506394_118506537_118506803_118506838_118509162_118509331_118510275_118510428_118512039_118512105_118516646_118516726_118516807_118516837_118517396_118517511_118519850_118519945_118525274_118525337_118525790_118525921_118526346_118526499_118526598_118526660_118528929_118529003_118529706_118529741_118531164_118531227_118533156_118533264_118535898_118536073_118536231_118536347_118538773
26300	chr5	-	4377	4	NIC	ENSMUSG00000066640.12	novel	7857	5	NA	NA	41	1	intron_retention	FALSE	canonical	3	21	junction_1	5.55777733351102	23	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTCTCCAGGATGTTT	NA	False	NA	NA	False	NA	NA	NA	142880952	142857542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_142858276_142864412_142864632_142871293_142874631_142880864
26301	chr18	+	3412	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	122	8	23	-8	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	3	141	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGAATCTGTTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	67908067	67928549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
26302	chr10	+	733	3	NNC	ENSMUSG00000034994.11	novel	651	3	NA	NA	261	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3989	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	6862	False	NA	NA	False	NA	NA	NA	81017145	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81017215_81017401_81017460_81017722
26303	chr1	-	2029	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	6	-234	3	217	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACATTTTAGGAAAAT	NA	False	NA	NA	False	NA	NA	NA	78465493	78401487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
26304	chr8	+	2605	18	NIC	ENSMUSG00000031753.17	novel	2737	19	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_13	99.7708793872361	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACATGCCATTGTGTTGG	9637	False	NA	NA	False	NA	NA	NA	111573674	111608853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
26305	chr15	-	1003	4	NNC	ENSMUSG00000075511.10	novel	1260	4	NA	NA	-16	-392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.0504472113883	1	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTGTCTGCTCTGCCT	229	False	NA	NA	False	NA	NA	NA	83251499	83242152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83242234_83243023_83243152_83249229_83249715_83251190
26306	chr1	-	2674	17	NIC	ENSMUSG00000052748.15	novel	2855	19	NA	NA	103	1	combination_of_known_junctions	FALSE	canonical	2	11	junction_5	56.5960190737829	4	17	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTTTCCGTTTACTC	NA	False	NA	NA	False	NA	NA	NA	151304084	151243448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151295850_151295935_151297784_151297872_151299257_151299357_151304047
26307	chr3	+	1901	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	690.7798697142	2	66	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCATTTGAGACCGTTGT	3844	False	NA	NA	False	NA	NA	NA	88204462	88229063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210183_88212355_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
26308	chr3	+	1815	16	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	323.955031172881	1	24	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGAAATGTTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	34093686	34123486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123304
26309	chr9	-	3605	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	-14	43	10	-41	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	1	142	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGAACTTAACTACATCA	8725	False	NA	NA	False	NA	NA	NA	31123101	31060895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
26310	chr5	+	2722	3	NNC	ENSMUSG00000018604.19	novel	4777	8	NA	NA	142	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	538	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	119818455	119822789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_119819131_119820695_119821387_119821433
26311	chr17	+	3097	9	NIC	ENSMUSG00000007603.10	novel	2749	10	NA	NA	5	-4	intron_retention	FALSE	canonical	3	256	junction_1	28.0287241058169	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATTTCTTTTATTTTGT	9228	False	NA	NA	False	NA	NA	NA	57071761	57076836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
26312	chr3	-	3148	26	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	1273	-2	combination_of_known_junctions	FALSE	canonical	3	79	junction_25	122.168120227824	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGGTTCCCTGAAT	NA	False	NA	NA	False	NA	NA	NA	100068375	100045497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335
26313	chr15	+	1497	4	FSM	ENSMUSG00000042406.9	ENSMUST00000229828.2	659	4	-56	-782	-55	0	multi-exon	FALSE	canonical	3	33	junction_1	614.772044473939	116	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4090	False	NA	NA	False	NA	NA	NA	80139329	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80139486_80139768_80139887_80140407_80140723_80140834
26314	chr9	-	2942	18	NIC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	1	-3	intron_retention	FALSE	canonical	3	10	junction_16	42.5340897272686	8	14	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTGGTCTGTGCTGGT	NA	False	NA	NA	False	NA	NA	NA	107971674	107962615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107962877_107962959_107963252_107963337_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107971425_107971559_107971633
26315	chr6	+	3526	9	NIC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	20	-1	intron_retention	FALSE	canonical	0	0	junction_7	186.808683885413	47	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	NA	False	NA	NA	NA	82923902	83007163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
26316	chr7	+	2970	7	ISM	ENSMUSG00000025487.16	ENSMUST00000166889.8	1096	12	4944	-346	-1984	-8	3prime_fragment	FALSE	canonical	3	1065	junction_4	65.812021866998	5	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTTCTCTTGGTGCTT	NA	False	NA	NA	False	NA	NA	NA	140467328	140478547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
26319	chr8	+	2574	14	ISM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	10244	3	-10169	-3	3prime_fragment	FALSE	canonical	3	573	junction_4	35.6016753810945	8	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATACCCAATGGTCTTATT	NA	False	NA	NA	False	NA	NA	NA	125600015	125616793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
26320	chr11	-	2615	14	NNC	ENSMUSG00000078789.10	novel	2139	13	NA	NA	43	1701	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.9738226760293	418	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGTAGGCCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	75081302	75066767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75067152_75068333_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081224
26321	chrX	+	1302	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-67	-25	67	mono-exon	FALSE	NA	NA	NA	NA	NA	5	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
26322	chrX	-	3803	10	NIC	ENSMUSG00000031166.14	novel	1749	10	NA	NA	11	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_9	11.515957795625	64	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGGGCCTCTCTTCAT	6895	False	NA	NA	False	NA	NA	NA	7999073	7989542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525_7998606_7999008
26323	chr16	-	1457	14	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	2	113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1353.67791786874	1	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292745	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280780_87282545_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
26324	chr8	+	2039	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	40	5	12	-5	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	1041	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTGCCTGTCTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	72993901	73011224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
26325	chr12	-	1780	13	NIC	ENSMUSG00000005656.10	novel	1928	14	NA	NA	-4	-7	combination_of_known_splicesites	FALSE	canonical	2	20	junction_6	311.194026649327	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGCTTTACAGTGAAGGT	NA	False	NA	NA	False	NA	NA	NA	54842453	54793140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
26326	chr7	+	3953	5	FSM	ENSMUSG00000057101.9	ENSMUST00000068975.6	3901	5	-61	9	-61	6	multi-exon	FALSE	canonical	3	55	junction_2	15.0499169432924	55	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACAGATGTCCCACTTG	NA	False	NA	NA	False	NA	NA	NA	23781287	23807129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_23781664_23784850_23784932_23797245_23797321_23800872_23800994_23803829
26327	chr14	+	3768	13	NIC	ENSMUSG00000035469.18	novel	2163	13	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	112.641762533559	231	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	59438906	59474714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_59439034_59443073_59443172_59447376_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
26328	chr9	+	2496	12	NNC	ENSMUSG00000032435.10	novel	2601	13	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	130.61912330092	4	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAATAACGTGTTGCCTT	2126	False	NA	NA	False	NA	NA	NA	114517857	114553377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542670_114544641_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
26330	chr1	+	3917	25	Antisense	novelGene_ENSMUSG00000025982.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	172	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTGGCGCTCCCAAGGA	132	False	NA	NA	False	NA	NA	NA	55026494	55066548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_55026648_55027095_55027317_55029463_55029735_55033488_55033623_55034531_55034641_55035970_55036086_55036169_55036353_55037195_55037419_55038785_55038907_55039171_55039322_55039402_55039545_55039800_55040074_55040169_55040260_55040548_55040723_55042265_55042363_55042449_55042648_55044957_55045078_55045325_55045543_55046638_55046879_55051264_55051434_55053641_55053719_55055532_55055650_55055937_55056042_55058391_55058562_55066499
26331	chr5	+	2549	15	NIC	ENSMUSG00000005514.15	novel	2636	16	NA	NA	47	-4	intron_retention	FALSE	canonical	3	232	junction_2	23.2036239252688	16	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTTGCCTGGTGTTGAT	2070	False	NA	NA	False	NA	NA	NA	135718058	135764176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
26332	chr16	-	3637	16	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	277.680311789575	3	85	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2528	False	NA	NA	False	NA	NA	NA	21981794	21877758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897495_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
26333	chr12	-	1698	6	Antisense	novelGene_ENSMUSG00000020994.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGAGAGAAGAAAGGATC	NA	False	NA	NA	False	NA	NA	NA	59119480	59115685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_59115787_59115905_59115977_59116926_59117081_59117158_59117303_59118210_59118824_59118865
26335	chr6	-	2836	16	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	12	-3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_14	63.7024332345319	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTATCGGAGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	146479266	146451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146477722_146477959_146478798
26336	chr3	+	2110	8	ISM	ENSMUSG00000078578.10	ENSMUST00000198748.5	787	9	682	-1226	225	3	3prime_fragment	FALSE	canonical	2	7	junction_3	1168.85300484654	3	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGTCATGAGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	135145196	135172284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_135145560_135160946_135161011_135161106_135161139_135162361_135162406_135164558_135164637_135165735_135165842_135168710_135168805_135170955
26337	chr11	+	2031	12	NIC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	189.433169270418	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAATAGTATCTGATTTG	4336	False	NA	NA	False	NA	NA	NA	102321345	102327629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102326071_102326318_102326534_102326769_102326849_102327075_102327160
26338	chr15	+	4840	1	Intergenic	novelGene_3377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCAGTGGGTAAGAGCAC	NA	False	NA	NA	False	NA	NA	NA	103134853	103139693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_103134900_103139700
26339	chr11	-	1977	14	FSM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	-67	340	-67	50	multi-exon	FALSE	canonical	3	831	junction_13	105.723262738262	1201	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGTGCACATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	96807389	96798591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
26342	chr12	-	2831	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	5	14	5	-13	multi-exon	FALSE	canonical	3	750	junction_8	40.7106788815908	438	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGAGTCAGAGACATCCTG	NA	False	NA	NA	False	NA	NA	NA	103392073	103374254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
26343	chr9	+	2532	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	3	0	-3	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	759	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTGTGAGTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20927280	20940110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
26344	chr6	-	3010	17	FSM	ENSMUSG00000000441.18	ENSMUST00000000451.14	3070	17	26	34	26	-6	multi-exon	FALSE	canonical	3	610	junction_8	72.4119076878934	438	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGGTTTAATGGCTAC	8170	False	NA	NA	False	NA	NA	NA	115653570	115595563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
26345	chr17	-	1963	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	677.4512187945	1	39	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	45906445	45896127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896643_45897029_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
26346	chr5	-	2461	6	Genic_Genomic	ENSMUSG00000104535.2	novel	4108	1	NA	NA	-12749	-1490	multi-exon	FALSE	non_canonical	0	0	junction_1	0	252	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTGTGGGAAGAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	8798517	8783150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_8783740_8787614_8787771_8788693_8788892_8790407_8790614_8796506_8796654_8797352
26347	chr10	-	3138	6	ISM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	39340	0	1966	0	3prime_fragment	FALSE	canonical	3	189	junction_2	20.519259245889	8	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	NA	False	NA	NA	NA	40719967	40707616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037
26348	chr7	-	818	1	Antisense	novelGene_ENSMUSG00000030604.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACATCTCAGATAAACCTA	9383	False	NA	NA	False	NA	NA	NA	27522341	27521523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_27521500_27522300
26349	chr9	-	3515	9	FSM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	188	0	188	0	multi-exon	FALSE	canonical	3	198	junction_1	14.7118149798045	187	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTGGCATGGGACTTT	NA	False	NA	NA	False	NA	NA	NA	70048672	69995792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539_70017659_70032205_70032480_70033468_70033566_70048594
26350	chr17	+	2205	4	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	-48	1108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1051.64284177979	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGATTGATCAGGAGC	NA	False	NA	NA	False	NA	NA	NA	88282441	88293315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282834_88287618_88287819_88290872_88291044_88291873
26351	chr5	+	3433	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	31	5755	31	5733	multi-exon	FALSE	canonical	3	157	junction_8	15.8962259671911	140	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTTTAAAAAAAGAACA	2990	False	NA	NA	False	NA	NA	NA	29639692	29657086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
26354	chr9	+	2153	22	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	159.12726833684	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGTCTCTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	108385274	108393134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386159_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108392188_108392233_108392305_108392432_108392994
26355	chr11	+	3582	14	NIC	ENSMUSG00000020888.17	novel	2968	15	NA	NA	4	-4	intron_retention	FALSE	canonical	3	488	junction_4	26.423720740113	9	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACTCCCCAAGCCTCTGG	7379	False	NA	NA	False	NA	NA	NA	69891664	69900933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
26356	chr8	-	1816	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	-16	-10	-16	10	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	764	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGTGTACCTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	4325929	4309720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
26357	chrX	-	1684	9	NIC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	46	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	623.207617391668	58	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	72140577	72129900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140438
26361	chr1	-	647	1	FSM	ENSMUSG00000104002.3	ENSMUST00000193040.3	2549	1	-446	2348	-446	-2348	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGTCAGGTATCCTGGC	NA	False	NA	NA	False	NA	NA	NA	34851435	34850788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_34850800_34851400
26362	chr4	-	3591	13	NIC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-9	-2	intron_retention	FALSE	canonical	3	684	junction_4	55.0274552685597	36	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGCTTGATGGCTGA	NA	False	NA	NA	False	NA	NA	NA	155845534	155825099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833666_155834588_155834714_155834929_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
26363	chr6	-	1698	5	NIC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-126	intron_retention	FALSE	canonical	3	1828	junction_2	12.3592070943083	12	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTTTGTGGGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	124791121	124787680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124788351_124788479_124788931_124789366_124789669_124789752_124789877_124790970
26364	chr5	-	4343	16	FSM	ENSMUSG00000042216.14	ENSMUST00000057209.12	4339	16	-1	-3	-1	3	multi-exon	FALSE	canonical	3	35	junction_5	17.3674024156368	40	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAACCGTGGGTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	113428468	113391091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
26367	chr10	+	3476	9	Antisense	novelGene_ENSMUSG00000055531.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCGCCGAGGCAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	117190066	117212847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117192030_117194897_117195055_117196347_117196460_117196759_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203893_117212742
26368	chr2	+	4440	17	FSM	ENSMUSG00000008200.16	ENSMUST00000238890.2	4691	17	248	3	14	-3	multi-exon	FALSE	canonical	3	117	junction_11	64.7446909020346	197	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTTGTCTTGATTAG	NA	False	NA	NA	False	NA	NA	NA	90575961	90611362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90576171_90577039_90577133_90581411_90581549_90581775_90581963_90583162_90583311_90583413_90583535_90587679_90588031_90588637_90588849_90593764_90593890_90596173_90596279_90597751_90597886_90598859_90599045_90606248_90606566_90606674_90606820_90607908_90608265_90609542_90609701_90609904
26369	chr14	+	2590	5	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-2504	-347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.33742469849155	11	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATCTCTAACTCTTCACT	NA	False	NA	NA	False	NA	NA	NA	40998257	41010425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40999591_41001646_41001810_41002809_41002942_41003619_41003802_41009645
26370	chr1	-	3900	1	Genic_Genomic	ENSMUSG00000004451.15	novel	NA	NA	NA	NA	5654	1779	mono-exon	FALSE	NA	NA	NA	NA	NA	3	80	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGATACTTTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	119400155	119396255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_119396300_119400200
26371	chr7	+	2659	14	Antisense	novelGene_ENSMUSG00000037032.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	267	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCCCGAGCGGCGGAGCC	NA	False	NA	105	True	NA	NA	NA	105207690	105230459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105208260_105208339_105208518_105208651_105208765_105214177_105214265_105214509_105214593_105214739_105214857_105215259_105215385_105215753_105215905_105216289_105216354_105216460_105216546_105216633_105216692_105216784_105216961_105222888_105223626_105230343
26372	chr4	+	3057	12	NIC	ENSMUSG00000028759.14	novel	3113	12	NA	NA	-2	10	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	30.9291378840073	123	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTTAGTGAAAAGTTTCC	4570	False	NA	NA	False	NA	NA	NA	137943942	137970469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137944052_137949399_137949500_137950839_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
26374	chr19	-	2775	2	NNC	ENSMUSG00000092274.4	novel	1030	4	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_1	0	10	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGAATTGTCATGGCT	10001	False	NA	NA	False	NA	NA	NA	5895506	5892332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5894995_5895393
26375	chr9	+	2874	9	NNC	ENSMUSG00000032519.12	novel	961	8	NA	NA	-14	1584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	73.6999830393468	334	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAATAACTTTTAAAATGT	1777	False	NA	NA	False	NA	NA	NA	119939456	119955154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949022_119949322_119949503_119949738_119949914_119951159_119951327_119952707_119953785_119954341
26376	chr10	-	2560	15	FSM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	39	5	-16	-5	multi-exon	FALSE	canonical	2	205	junction_12	41.8359283147773	445	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTCATTTTTGTAATT	NA	False	NA	NA	False	NA	NA	NA	62285478	62264992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279173_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
26377	chr16	-	1740	14	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	13	110	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1289.33622663968	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87292663	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87283055_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
26379	chr18	-	3175	6	NNC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	56	1652	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.693089215181	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTAGCTTGGAATTGC	NA	False	NA	NA	False	NA	NA	NA	24153811	24145329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24146575_24146784_24147743_24150340_24150489_24150724_24151226_24153274_24153555_24153768
26380	chrX	+	2346	18	NNC	ENSMUSG00000031060.17	novel	2790	23	NA	NA	17470	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.136687644935	1	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTCTACTTTCTC	NA	False	NA	NA	False	NA	NA	NA	20503806	20517128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20503821_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
26381	chr9	+	3040	2	ISM	ENSMUSG00000062867.14	ENSMUST00000193421.2	840	6	30	-574	-1	-260	intron_retention	FALSE	canonical	3	2351	junction_1	0	3	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGGCTCCCAAGATCCCAC	1178	False	NA	NA	False	NA	NA	NA	108437667	108441109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108437831_108438232
26383	chr17	+	2773	1	Genic_Genomic	ENSMUSG00000050088.10	novel	NA	NA	NA	NA	1	67	mono-exon	FALSE	NA	NA	NA	NA	NA	281	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTAGGCTTTCTGCCAT	NA	False	NA	NA	False	NA	NA	NA	15163492	15166265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_15163500_15166300
26384	chr2	-	1244	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	125	1173	-2	-1165	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGATACCGATATTCAAG	3757	False	NA	NA	False	NA	NA	NA	154734730	154714502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
26385	chr13	-	2785	17	FSM	ENSMUSG00000021635.15	ENSMUST00000022136.14	2839	17	52	2	3	-2	multi-exon	FALSE	canonical	3	38	junction_16	42.8397723354128	328	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTTCTTCTTATCCT	NA	False	NA	NA	False	NA	NA	NA	100787507	100753673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787329
26386	chr4	-	1747	1	NIC	ENSMUSG00000063800.6	novel	1516	10	NA	NA	2706	-10011	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGCTATCCCAAAGGT	NA	False	NA	NA	False	NA	NA	NA	108433827	108432080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_108432100_108433800
26387	chr10	+	1173	1	FSM	ENSMUSG00000090610.4	ENSMUST00000170703.4	1060	1	-49	-64	-49	64	mono-exon	FALSE	NA	NA	NA	NA	NA	14	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAGTCAGACAGC	NA	False	NA	NA	False	NA	NA	NA	93614472	93615645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93614500_93615600
26388	chrX	+	2197	4	NNC	ENSMUSG00000045427.14	novel	2364	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	371.760675704142	60	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	NA	NA	NA	133502031	133507803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133502083_133503440_133503512_133505603_133506882_133507006
26389	chr17	-	2077	5	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	72	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTCCCCTCGCCCTATTTA	2274	False	NA	NA	False	NA	NA	NA	29261856	29251637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29251759_29255212_29255412_29257460_29257602_29260150_29260265_29260354
26390	chr7	-	1536	8	NIC	ENSMUSG00000030603.17	novel	1883	11	NA	NA	843	-2	intron_retention	FALSE	canonical	3	2113	junction_3	108.504678729179	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTATTTAATTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	27748630	27741143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27741346_27741525_27741582_27741763_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528
26391	chr2	+	3579	14	NNC	ENSMUSG00000027242.15	novel	2789	13	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	15.000197237362	1	125	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATAATGTCTTTGAGTA	NA	False	NA	NA	False	NA	NA	NA	121337192	121375336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121374088_121374759
26392	chr13	+	2839	8	ISM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	22	2	16	-2	intron_retention	FALSE	canonical	3	544	junction_6	104.517550523091	41	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATCTTGACTTTATAGA	NA	False	NA	NA	False	NA	NA	NA	100261381	100274196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196
26393	chr17	+	1786	5	NNC	ENSMUSG00000116802.2	novel	2194	4	NA	NA	3	270	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	45.7329203091165	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTGATATCCCCAAGTAT	6227	False	NA	NA	False	NA	NA	NA	17455136	17486595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473_17484974_17485648
26394	chr4	-	2767	5	NNC	ENSMUSG00000028851.7	novel	1316	8	NA	NA	17	-88	intron_retention	TRUE	non_canonical	0	0	junction_1	1617.47372467067	18	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGATGAGCAGAAGAAACA	4477	False	NA	NA	False	NA	NA	NA	133273290	133260540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133262395_133262430_133262887_133262978_133263183_133268449_133268528_133273115
26395	chr17	-	2860	19	FSM	ENSMUSG00000025733.18	ENSMUST00000043897.16	3189	19	321	8	0	-8	multi-exon	FALSE	canonical	3	133	junction_18	11.3871272350258	269	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGCAATGTGACTGCTGT	6008	False	NA	NA	False	NA	NA	NA	26063504	26057438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059726_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153_26061263_26061339_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
26396	chr9	+	3449	6	Antisense	novelGene_ENSMUSG00000042688.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	132	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCCTCGCAGAGGCACGC	NA	False	NA	NA	False	NA	NA	NA	75294837	75317308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_75296423_75297440_75297651_75300646_75300816_75302794_75302936_75304859_75306031_75317135
26397	chr13	-	2279	15	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	3235	-150	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	205.491546079648	2	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGTTTGATGACTTACA	NA	False	NA	NA	False	NA	NA	NA	9042851	9022665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9040710_9040835_9041750_9041888_9041967_9042072_9042680
26398	chr5	+	2172	7	NNC	ENSMUSG00000029110.14	novel	2895	8	NA	NA	3	-654	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1051.31325282028	1	94	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACCACTGGAGCTTTGC	NA	False	NA	NA	False	NA	NA	NA	34493770	34510114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493829_34499870_34500024_34504118_34504246_34506007_34506093_34507255_34507416_34508133_34508183_34508574
26399	chr19	-	2212	6	FSM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	-82	-182	-82	176	multi-exon	FALSE	canonical	3	184	junction_4	26.9102211064867	1013	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTAGTAAACTGAAATT	NA	False	NA	NA	False	NA	NA	NA	53379091	53367644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
26400	chr1	-	1870	12	ISM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	45	1420	45	-109	5prime_fragment	FALSE	canonical	3	390	junction_11	127.371520098613	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTGGTTTTAAGGTC	NA	False	NA	NA	False	NA	NA	NA	121495673	121482983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
26401	chr16	-	1983	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	82	1338	3	561	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGATGCAACTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	22084673	22064636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
26402	chr2	-	2940	17	NNC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	-28	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	66.588287258346	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATAGCTTCCTATTCCA	NA	False	NA	NA	False	NA	NA	NA	91540892	91504969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91505620_91506194_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
26403	chr11	-	2650	17	NIC	ENSMUSG00000020400.18	novel	2642	17	NA	NA	97	-9	combination_of_known_splicesites	FALSE	canonical	1	1	junction_16	78.5163199596109	1	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAGATCAACATTTTGTG	3754	False	NA	NA	False	NA	NA	NA	54846776	54801623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846673
26405	chr18	-	4072	3	NIC	ENSMUSG00000024580.9	novel	4038	4	NA	NA	0	-5	intron_retention	FALSE	canonical	3	252	junction_2	10.5	12	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATATTTTTTACAGTTT	NA	False	NA	NA	False	NA	NA	NA	61859394	61848086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_61851907_61852772_61852927_61859296
26407	chr16	-	2541	8	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18082	10624	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTCAAATCCTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	38411744	38379060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38379122_38384473_38384661_38393412_38393638_38396103_38396186_38402327_38402487_38405535_38406771_38408544_38408664_38411271
26408	chrX	+	2230	4	NNC	ENSMUSG00000033460.15	novel	2253	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	53.074371299987	674	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	133618700	133622666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619668_133619858_133620375_133620475_133620823
26409	chr10	-	3333	6	NNC	ENSMUSG00000000711.4	novel	3180	6	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	69.0408574686033	267	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCACTGGACTGTT	NA	False	NA	NA	False	NA	NA	NA	128532134	128513048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128531897
26410	chr6	-	3069	14	NIC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-6	-251	combination_of_known_junctions	FALSE	canonical	3	3	junction_13	262.288336754864	1	141	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGCCTGCATACTTAGT	-7	True	NA	NA	False	NA	NA	NA	30509754	30481477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30509683
26411	chr15	+	4074	28	NNC	ENSMUSG00000015365.16	novel	4133	27	NA	NA	-5	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	15.8574756379344	47	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCTTTCTGTCTCAGAA	2902	False	NA	NA	False	NA	NA	NA	88867106	88939353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565_88895625_88896102_88896209_88896274_88896399_88902352_88902453_88904463_88904643_88905366_88905514_88906203_88906326_88907815_88907916_88908869_88909035_88910665_88910840_88931009_88931160_88937580_88937689_88938429_88938568_88938713_88938834_88939018
26413	chr7	-	1858	18	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	473.295360499019	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	33929679	33901581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903502_33905028_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
26415	chr6	-	3068	20	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	7	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	318.591342025009	1	117	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGGCTGACTGGTTTCAG	7912	False	NA	NA	False	NA	NA	NA	124806391	124791991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797527_124798039_124798162_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802138_124803261_124803388_124806247
26416	chr11	-	2592	2	FSM	ENSMUSG00000085156.9_ENSMUSG00000064513.3	ENSMUST00000129570.3	1631	2	-972	11	32	-11	multi-exon	FALSE	canonical	3	446	junction_1	0	225	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGACTCCAGCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	6478731	6475602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6475818_6476354
26417	chr2	-	3963	12	FSM	ENSMUSG00000068742.12	ENSMUST00000090559.12	3976	12	7	6	0	-6	multi-exon	FALSE	canonical	3	83	junction_5	10.1019595513375	97	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAACTGTGTTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	92264381	92233996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_92236166_92241970_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
26418	chr16	+	780	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-32	221	-32	-221	mono-exon	FALSE	NA	NA	NA	NA	NA	11	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGATGCGCCCATGTCCCAG	NA	False	NA	NA	False	NA	NA	NA	24348111	24348891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24348900
26419	chr14	+	1935	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	10	2798	10	1262	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	1	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTTGACATTGGCAGG	NA	False	NA	NA	False	NA	NA	NA	63359920	63380574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
26420	chr2	+	2633	6	FSM	ENSMUSG00000039463.15	ENSMUST00000135353.8	1884	6	-11	-738	-2	738	multi-exon	FALSE	canonical	3	93	junction_5	14.5134420452214	4	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTACAGGGGTCTGAAGTG	NA	False	NA	NA	False	NA	NA	NA	167263638	167289608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425
26421	chrX	-	1930	10	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	217.114920926428	1067	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	138963349	138907553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138961523_138961572_138963307
26423	chr9	-	1833	13	NNC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2513.24857284131	1	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996740	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985721_89985822_89989287_89989356_89992178_89992226_89996588
26424	chr13	-	3696	6	NNC	ENSMUSG00000071281.13	novel	733	5	NA	NA	-4	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.0488226762856	2	104	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCAAGTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	67872417	67853434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67856219_67856302_67856461_67856628_67857049_67858433_67858530_67858999_67859127_67872306
26425	chr5	-	2822	5	NIC	ENSMUSG00000029507.17	novel	1814	6	NA	NA	13	1164	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	214.321020900891	7	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAAGTATGTGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	110928444	110920368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110927552_110927764_110928105
26426	chr6	-	3287	11	NNC	ENSMUSG00000038784.14	novel	3473	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	67.4943701355898	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGGGTGAGTCTTGTTC	7636	False	NA	NA	False	NA	NA	NA	35110669	34998999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35029839_35041823_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
26427	chr14	+	2586	8	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-24	-1889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	189.533153634214	45	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52517049	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529463_52530863
26428	chr2	+	1823	5	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-11	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	2113.07039636639	6	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26800843_26801017_26802325_26802540_26802814_26802999_26803070_26803176
26429	chr18	+	2572	12	NNC	ENSMUSG00000024563.17	novel	8089	11	NA	NA	-127	422	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.3213342899537	400	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAAAGGCAGCCGACCTT	NA	False	NA	NA	False	NA	NA	NA	76374523	76438787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_76374609_76375005_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
26430	chr5	-	2536	10	NIC	ENSMUSG00000001082.13	novel	1485	12	NA	NA	-2	0	intron_retention	FALSE	canonical	3	315	junction_9	39.0981670499611	2	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794486	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793851_34793937
26431	chr2	+	1861	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	929.730378329593	1	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116370	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117639_130117937_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
26432	chr11	-	2928	21	NIC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	1	4	junction_20	92.1311022402316	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGTTTGTGCTTCAGGA	NA	False	NA	NA	False	NA	NA	NA	117671445	117656815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117670251_117670337_117671361
26433	chr11	+	3533	26	FSM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	-6	24	-6	-22	multi-exon	TRUE	canonical	3	630	junction_7	88.2626444199357	257	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTTTCGTCTTCACT	6794	False	NA	NA	False	NA	NA	NA	115714868	115746582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
26434	chr17	-	3986	5	FSM	ENSMUSG00000024098.7	ENSMUST00000024906.6	4086	5	94	6	5	-6	multi-exon	FALSE	canonical	3	222	junction_1	25.0636689253589	103	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAGTCATGTTTTTTAT	8788	False	NA	NA	False	NA	NA	NA	66258127	66230065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
26435	chr3	-	3237	15	NNC	ENSMUSG00000027981.15	novel	3888	15	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	33.0467356132777	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCAACAGTGTCTAATTT	NA	False	NA	NA	False	NA	NA	NA	113423549	113399119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_113400949_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415478_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
26436	chr6	-	1821	6	ISM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	603	403	272	0	internal_fragment	FALSE	canonical	3	1638	junction_2	88.4375485865591	13	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	124941898	124935778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686
26437	chr18	+	2216	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	475.319249440719	1	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTCTATGGAGATTTGT	6432	False	NA	-90	True	NA	NA	NA	77126250	77240915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223645_77232698_77232839_77237756_77237795_77240310
26438	chr16	-	4033	5	FSM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	36	168	-3	-168	multi-exon	FALSE	canonical	3	50	junction_2	5.78791845139511	136	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTTTTCTATCTTAAGA	4017	False	NA	NA	False	NA	NA	NA	75563673	75552077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_75555337_75556302_75556471_75557983_75558198_75561831_75562173_75563622
26440	chr3	-	3040	13	NNC	ENSMUSG00000055436.19	novel	3106	13	NA	NA	-4	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	194.079934133679	778	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTATATAAAAGCATTTT	NA	False	NA	NA	False	NA	NA	NA	157742237	157716138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719681_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
26441	chr10	+	1822	11	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	0	-4	intron_retention	TRUE	non_canonical	0	0	junction_1	649.312259240498	31	42	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCTGTCTTCCCTGAGC	1624	False	NA	NA	False	NA	NA	NA	79690501	79700189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79694565_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698683_79699760
26442	chr9	-	1532	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	56	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5001.31346829643	41	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7156	False	NA	NA	False	NA	NA	NA	78388950	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387323_78387616_78387703_78387792_78387971_78388920
26443	chr14	-	3979	13	NIC	ENSMUSG00000021910.16	novel	2780	14	NA	NA	0	-8	intron_retention	TRUE	canonical	3	57	junction_1	278.169113230703	9	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGTGTGCACATCTT	9422	False	NA	NA	False	NA	NA	NA	30928657	30905277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30906355_30906898_30907008_30907268_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
26444	chr11	-	4725	18	FSM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	11	1249	0	-1249	multi-exon	FALSE	canonical	2	8	junction_15	2.25532817796245	24	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATCACTTCCCAGAATAC	NA	False	NA	NA	False	NA	NA	NA	90528899	90368566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_90371541_90385427_90385486_90426305_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
26445	chr11	-	1088	1	ISM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	160492	13	71318	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	7	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATACTAAACAGTGTG	NA	False	NA	NA	False	NA	NA	NA	90368418	90367330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_90367300_90368400
26446	chr19	-	1702	7	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1274.50531797853	2	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902346	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884345_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
26447	chr8	-	474	2	ISM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	80	12450	-13	-481	5prime_fragment	FALSE	canonical	3	1341	junction_1	0	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACACTGTACCGGTCTT	NA	False	NA	NA	False	NA	NA	NA	95564906	95558881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_95559329_95564879
26448	chr17	+	1455	10	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-11	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	752.144703046553	5	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460769	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35467993_35471749_35471833_35471939_35472085_35472182_35472331_35472448
26449	chr6	+	2360	14	NNC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	3	-34	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	206.167048945766	501	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	18	True	NA	NA	False	NA	NA	NA	30048032	30140869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30134125_30134199_30140214
26450	chr15	-	2847	8	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	-7487	-2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	244.623158748141	337	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTTGTCCCGTGTTTG	7655	False	NA	NA	False	NA	NA	NA	88592554	88571238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88592440
26451	chr17	-	1178	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	3	2	3	-2	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTGGCTTGTGTTCTGGC	NA	False	NA	NA	False	NA	NA	NA	24388432	24382841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
26452	chr5	+	2951	8	NIC	ENSMUSG00000064267.14	novel	2805	7	NA	NA	-27	-26	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	18.6153327191565	225	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGCTGTCATGGGGCTT	NA	False	NA	NA	False	NA	NA	NA	122344839	122380334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122345220_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
26453	chr16	+	4620	10	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	-6	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	255.515165890403	2	220	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATACAATAAATTCTTAT	NA	False	NA	NA	False	NA	NA	NA	84631806	84660640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641231_84643002_84643258_84649347_84649543_84653349_84653404_84653921_84654053_84654267_84654461_84657262
26454	chr18	+	2675	4	NNC	ENSMUSG00000057561.11	novel	1905	4	NA	NA	0	-4	intron_retention	FALSE	canonical	0	0	junction_3	805.866131700683	1	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTAAATGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730821	46743274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731713_46731768_46740570_46740749_46740877
26455	chr14	-	2777	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_17	15.936508975905	261	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	5421	False	NA	NA	False	NA	NA	NA	30348167	30317310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
26456	chrX	-	2009	10	NNC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	-7	0	intron_retention	FALSE	non_canonical	0	0	junction_3	906.977778866729	18	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACCCTGTTCCACATG	NA	False	NA	NA	False	NA	NA	NA	72974369	72965744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72970305_72971377_72971595_72971878_72971967_72972721_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
26457	chr18	+	3067	18	NIC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-46	-3	intron_retention	FALSE	canonical	3	938	junction_13	98.3201465167372	1	127	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTGGATTCCAAATTT	6203	False	NA	NA	False	NA	NA	NA	34758013	34765854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
26459	chr2	+	4406	4	Antisense	novelGene_ENSMUSG00000027620.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATACACACACACAAACAC	7740	False	NA	NA	False	NA	NA	NA	156015853	156022102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_156019826_156020798_156020873_156021096_156021160_156021805
26460	chrX	+	3026	11	NNC	ENSMUSG00000000134.18	novel	3277	10	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	118.271256017682	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTGAGTCTCCCGTTCT	NA	False	NA	NA	False	NA	NA	NA	7628795	7641437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7628870_7629128_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639821
26461	chrX	-	2774	18	NNC	ENSMUSG00000025264.13	novel	3796	5	NA	NA	7493	39180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	13	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCAGGGTAAGACCCGGGA	NA	False	NA	NA	False	NA	NA	NA	149872026	149830909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149830975_149849174_149849350_149849704_149849882_149850003_149850446_149851870_149851960_149852634_149852785_149855163_149855324_149855427_149855569_149861954_149862013_149862152_149862301_149862874_149862966_149863110_149863197_149868629_149868654_149869105_149869207_149869509_149869642_149869815_149869976_149870961_149871103_149871592
26462	chr13	-	1490	12	ISM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	27	749	27	-749	5prime_fragment	FALSE	canonical	3	2035	junction_3	144.119268789304	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAACCTTACTCCAAGAT	NA	False	NA	NA	False	NA	NA	NA	97334838	97313587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
26463	chr5	+	2237	5	NNC	ENSMUSG00000029462.19	novel	1014	5	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1108.03801830082	6241	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTATTATTTTATGTGT	719	False	NA	NA	False	NA	NA	NA	122492471	122503037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122492540_122498067_122498268_122500098_122500335_122500867_122501368_122501804
26464	chr19	-	1703	4	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	456	intron_retention	FALSE	canonical	3	1174	junction_3	1094.8263180371	62	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACAGAGAAACCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	4092237	4089828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4090540_4090707_4091086_4091397_4091939_4092164
26465	chr19	-	1804	9	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	1	2	intron_retention	FALSE	canonical	3	1283	junction_6	98.1768175283758	19	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCTGGAACTTTGCTT	6572	False	NA	NA	False	NA	NA	NA	4062660	4057499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4060010_4061101_4061273_4061345_4061429_4062550
26466	chr3	-	1648	2	Antisense	novelGene_ENSMUSG00000027852.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATCCAGGAAGAGTATTG	NA	False	NA	NA	False	NA	NA	NA	102975225	102973442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_102973897_102974031
26467	chr7	-	2889	5	FSM	ENSMUSG00000056383.11	ENSMUST00000205338.2	2071	5	43	-861	-24	-6	multi-exon	FALSE	canonical	3	47	junction_4	16.2845785944863	93	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAAATTTCCTTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	41042760	41022352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41042650
26468	chr11	-	2062	3	ISM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	60	2091	18	-2088	5prime_fragment	FALSE	canonical	3	2715	junction_2	154.5	28	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCTCCATCTCTTCCAAA	NA	False	NA	NA	False	NA	NA	NA	55352005	55339557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_55341452_55345706_55345783_55351913
26469	chr11	-	1619	1	NIC	ENSMUSG00000018585.10	novel	541	4	NA	NA	12937	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	615	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGTGTCTGGTGTATGT	NA	False	NA	NA	False	NA	NA	NA	55339086	55337467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_55337500_55339100
26470	chr13	-	1398	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-469	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	237.004219371723	3	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTCTTTTCTTTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	34314337	34311199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312031_34312291_34312453_34312846_34312966_34313228_34313338_34314159
26472	chr9	-	4033	10	NNC	ENSMUSG00000032194.10	novel	5040	12	NA	NA	3452	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	136.679764503351	260	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTCGTGTCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	21706347	21678078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21680301_21681049_21681140_21681221_21681423_21684040_21684184_21685828_21686049_21686996_21687085_21690996_21691234_21691674_21691766_21691855_21692002_21705752
26474	chrX	+	1595	10	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	4917	4	389	-4	3prime_fragment	FALSE	canonical	3	3907	junction_9	362.237320748718	1	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTTTTCCTGTCATAC	NA	False	NA	NA	False	NA	NA	NA	105235622	105247301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
26475	chr5	+	4026	2	ISM	ENSMUSG00000092354.8	ENSMUST00000174312.2	619	3	-42	-1325	-42	-542	intron_retention	FALSE	canonical	3	132	junction_1	0	26	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTCCCAAACGCCCACCA	NA	False	NA	NA	False	NA	NA	NA	101987978	101993523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_101988098_101989616
26476	chr4	+	2779	16	FSM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	-53	-4	-53	4	multi-exon	FALSE	canonical	3	129	junction_3	19.5436832648187	352	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGTCCCTGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	141171911	141194540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
26477	chr2	-	4636	14	NNC	ENSMUSG00000026779.7	novel	5590	12	NA	NA	-11	-944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	66.0203483066588	2	110	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTACATTGCAGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	23045920	23006561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026892_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23038196_23038345_23040999_23041138_23044034_23044129_23045816
26478	chr7	-	965	7	ISM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	49	3027	-11	293	5prime_fragment	FALSE	canonical	3	1495	junction_1	231.861608627982	21	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGGTGGCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	79765091	79747620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
26480	chr12	-	2059	5	Intergenic	novelGene_4321	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	21.2058364607483	3	47	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACTCCTTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	22302666	22291531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_22291657_22292443_22294077_22295404_22295466_22295667_22295795_22302553
26481	chrX	+	2835	21	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12817	-4432	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	108.764642692375	3	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATTTTTTCTGTCTGA	8002	False	NA	NA	False	NA	NA	NA	159932928	160018428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608
26482	chr13	-	3610	11	NIC	ENSMUSG00000032999.11	novel	3527	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	23.0399652777516	167	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGACTTCTAATCTCAAA	NA	False	NA	NA	False	NA	NA	NA	65353758	65324924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347238_65353433_65353531_65353628
26483	chr7	-	1738	16	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	502.85590602301	2	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGGAGGCATGGGGGCTC	NA	False	NA	NA	False	NA	NA	NA	33929708	33901592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926652_33929600
26484	chr5	+	1508	13	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1464	-2	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	660.779442947662	21	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTGCTTCCAGATCTC	NA	False	NA	NA	False	NA	NA	NA	21991744	22008783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_21992049_21992107_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
26485	chr4	+	3093	2	FSM	ENSMUSG00000043572.8	ENSMUST00000146966.2	644	2	-39	-2410	-5	-4	multi-exon	TRUE	canonical	2	6	junction_1	0	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGAACTCGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	106508260	106512473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_106508346_106509465
26486	chr13	-	1941	13	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	29	-89	intron_retention	FALSE	canonical	3	2035	junction_4	142.515569324899	3	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334836	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97313098_97313304_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
26487	chr2	-	889	2	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	20409	2	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	0	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	NA	False	NA	38	True	NA	NA	NA	154714293	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157
26488	chr2	+	2196	11	NIC	ENSMUSG00000026999.15	novel	2688	10	NA	NA	29	208	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	107.850637457551	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAGTTTGTTAATATG	NA	False	NA	NA	False	NA	NA	NA	80447608	80489458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_80447951_80451537_80451585_80454551_80454705_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
26489	chr12	+	2879	6	ISM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	4352	15	173	-15	3prime_fragment	FALSE	canonical	3	135	junction_2	8.37615663654877	3	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGATAAAGCCAGAATTTCA	NA	False	NA	NA	False	NA	NA	NA	8367783	8393809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
26490	chr7	-	2199	5	NIC	ENSMUSG00000074129.15	novel	734	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	16202	junction_3	923.705682292796	8	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778159	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44776219_44776414_44776517_44776632_44776699_44776919
26491	chrX	+	2455	8	NNC	ENSMUSG00000023092.17	novel	2770	8	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	59.8849236589031	367	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGCCTCCTGTCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	55777147	55838703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55836695_55836799_55837203
26492	chr8	+	4644	6	NNC	ENSMUSG00000046152.17	novel	3527	6	NA	NA	9	1438	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	16.1542564050469	36	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAAAATTATCATTG	NA	False	NA	NA	False	NA	NA	NA	31677383	31753204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622_31726459_31749927_31752639_31752845
26493	chr2	-	3859	3	NIC	ENSMUSG00000026958.14	novel	3017	8	NA	NA	3	-1	intron_retention	FALSE	canonical	3	303	junction_2	18	1	118	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTCTAGTAGGATCCAT	9004	False	NA	NA	False	NA	NA	NA	25246368	25242302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25246155_25246242
26494	chr14	-	3251	19	NNC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	53.27554739857	4	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	123220672	123156382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209190_123209237_123209369_123210581_123210698_123215579_123215699_123220583
26495	chr10	-	3588	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	-22	0	-16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGACTCATCTTCTTA	NA	False	NA	NA	False	NA	NA	NA	112764922	112761334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_112761300_112764900
26496	chr11	+	3762	21	NNC	ENSMUSG00000009090.18	novel	4085	21	NA	NA	-1	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	90.3980088276285	1	112	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCAATCATGCACATTTCT	NA	False	NA	NA	False	NA	NA	NA	4936932	4992573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973219_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990263_4990422_4991717
26497	chr15	+	2009	20	FSM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	44	1246	17	17	multi-exon	FALSE	canonical	1	369	junction_14	161.21684095061	28	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTTCACCGGACAGACTA	NA	False	NA	NA	False	NA	NA	NA	89239982	89255783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
26498	chr4	-	4087	19	NNC	ENSMUSG00000029020.14	novel	4341	20	NA	NA	-4	-13	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	19.5448202856921	1	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGACCCTGTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	147989148	147958068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974616_147979046_147979156_147982920_147983100_147987811_147987955_147989114
26500	chr11	+	3889	14	NIC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	1214	-25	intron_retention	FALSE	canonical	3	57	junction_10	10.4133505569766	3	47	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAATACAAGATTTATT	NA	False	NA	NA	False	NA	NA	NA	119247632	119271850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_119247860_119248803_119248997_119250122_119250209_119253042_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
26501	chr5	-	1234	2	Antisense	novelGene_ENSMUSG00000029591.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	384	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGACGGCGTTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	114277379	114275241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_114275391_114276294
26502	chr17	+	512	1	Antisense	novelGene_ENSMUSG00000090877.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAGGATCGGGAACGCGC	5461	False	NA	NA	False	NA	NA	NA	35177604	35178116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35177600_35178100
26503	chr8	-	2691	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	195.288177374418	44	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTGTGACTGATGG	NA	False	NA	NA	False	NA	NA	NA	40964357	40945583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964063
26504	chr2	-	2425	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	29	-6	29	6	multi-exon	FALSE	canonical	3	221	junction_3	37.3630833845388	649	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTCTAAGAGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	5900214	5875791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
26506	chr13	+	2557	16	NIC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	9	1	intron_retention	FALSE	canonical	3	187	junction_3	18.5931887170186	415	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTAGTTTGCATTCT	4747	False	NA	NA	False	NA	NA	NA	38221229	38245404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
26507	chr14	-	3349	2	FSM	ENSMUSG00000041703.8	ENSMUST00000039118.7	4767	2	1434	-16	1434	16	multi-exon	FALSE	canonical	3	83	junction_1	0	152	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCAAGGCACATCTCTGT	NA	False	NA	NA	False	NA	NA	NA	122701655	122694190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_122697188_122701303
26508	chr3	-	748	2	Genic_Genomic	ENSMUSG00000047676.7	novel	885	1	NA	NA	132	64	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCTGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149779047	149778230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_149778454_149778522
26509	chr1	-	1929	4	NNC	ENSMUSG00000038633.6	novel	2048	3	NA	NA	-25	-207	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	552.972573159525	1582	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTACTAAGCTAGCCTT	NA	False	NA	NA	False	NA	NA	NA	182110394	182103543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_182104459_182105577_182105641_182106540_182107284_182110186
26510	chr2	+	2499	4	Fusion	ENSMUSG00000065287.3_ENSMUSG00000027405.17	novel	741	4	NA	NA	94	0	intron_retention	FALSE	canonical	0	0	junction_3	1043.40223414665	1	91	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	130117809	130121227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_130118574_130118951_130119053_130119395_130119882_130120079
26513	chr12	+	1965	10	NNC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-10	351	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	277.335781684349	1185	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCTAAAAACAACTGTCC	NA	False	NA	NA	False	NA	NA	NA	59060229	59075607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59060477_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
26514	chr1	-	3072	13	NNC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_7	42.22426895624	5	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6078	False	NA	NA	False	NA	NA	NA	53336151	53228345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255345_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
26515	chr5	-	3398	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	7	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	1	175	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATCTGATGTCGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	135963397	135937271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135939368_135939424_135940506_135963176
26516	chr11	-	2799	10	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1008	junction_5	78.583446251048	156	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCGTGGCTGGCAGTCA	NA	False	NA	NA	False	NA	NA	NA	96807218	96798643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
26517	chr17	-	1940	13	NNC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	200	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	695.911193248743	1	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAATAAACATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45904360	45896152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900450_45900619_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257
26518	chr9	+	2203	16	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	-15	1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_15	100.15885160861	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGTCCTGTCATTAAT	NA	False	NA	NA	False	NA	NA	NA	114230160	114303446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293190_114302905
26519	chr8	+	449	1	NIC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	13475	-1110	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCTGAATGGCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	106977867	106978316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106977900_106978300
26520	chr1	-	2163	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	12	0	12	0	multi-exon	FALSE	canonical	3	1712	junction_8	135.919976456737	1	81	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	128345084	128291443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
26521	chr4	+	3591	5	FSM	ENSMUSG00000046862.15	ENSMUST00000059790.11	3886	5	295	0	-251	0	multi-exon	FALSE	canonical	3	58	junction_2	51.5866988670529	188	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	143139290	143147661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_143139662_143141918_143141984_143143209_143143523_143143942_143144531_143145407
26523	chrX	+	2874	9	NNC	ENSMUSG00000000134.18	novel	3390	10	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	103.223967662554	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	7628955	7641438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7629078_7632798_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
26524	chr15	-	1315	4	ISM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	2894	19	2769	-8	3prime_fragment	FALSE	canonical	3	690	junction_3	112.995575134604	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAAACTCTCTCCCAGG	NA	False	NA	NA	False	NA	NA	NA	57894817	57885673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352
26526	chr3	-	2234	3	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10803	-1304	2413	1304	3prime_fragment	FALSE	canonical	3	97	junction_2	38	1176	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGGCCTCGAACTC	NA	False	NA	NA	False	NA	NA	NA	90362370	90356593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_90358490_90358612_90358705_90362124
26527	chr15	+	4216	19	NNC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	19	3	intron_retention	FALSE	non_canonical	0	0	junction_1	218.923185412398	2	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCCTGTTCCTTCCCACT	2262	False	NA	NA	False	NA	NA	NA	82031470	82088879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031696_82054014_82054356_82055301_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
26528	chr14	-	1845	15	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	242.349858843847	843	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGTTTAAGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	30740971	30734391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739163_30739232_30739371_30739764_30739824_30740885
26530	chr18	-	2454	9	NNC	ENSMUSG00000041891.17	novel	4676	13	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	308.570494376893	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTTTTTTCCTCCATTGA	NA	False	NA	NA	False	NA	NA	NA	66135692	66113824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_66115398_66126253_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
26531	chrX	+	1742	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1444.19922794606	1	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTTTCCTGTCATACT	NA	False	NA	NA	False	NA	NA	NA	105230777	105247302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243260_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
26532	chr2	+	2602	14	NNC	ENSMUSG00000033068.17	novel	2540	14	NA	NA	-18	-21	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	44.6562147387449	382	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGGTTTACAAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	150590943	150613574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612483
26533	chr10	+	4350	25	NNC	ENSMUSG00000005682.10	novel	4379	26	NA	NA	4	-7	intron_retention	FALSE	non_canonical	0	0	junction_6	84.9023540440559	1	165	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCATTAGAAAACCGCTAG	NA	False	NA	NA	False	NA	NA	NA	128139207	128157209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128139341_128139963_128140259_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145101_128146024_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153778_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
26534	chr11	+	3950	21	NNC	ENSMUSG00000019302.17	novel	4008	22	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	45.1429673371169	241	32	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGAAAAGCTGCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	100900318	100954536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100945841_100945970_100946259_100946432_100953137
26535	chr17	+	3319	22	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	60.8625454044322	2	78	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	45817766	45831769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820323_45820467_45825417_45825564_45825738_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
26536	chr11	-	3056	12	NNC	ENSMUSG00000020419.12	novel	1343	11	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	76.4485458677224	11	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTGTTTGATAATTTAT	NA	False	NA	NA	False	NA	NA	NA	4391086	4295815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4372898_4374041_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
26537	chr2	+	2332	1	FSM	ENSMUSG00000065124.3	ENSMUST00000083190.3	130	1	-1577	-625	-1577	625	mono-exon	FALSE	NA	NA	NA	NA	NA	73	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32851700_32854100
26538	chr13	-	3092	23	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	-157	-1700	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	137.381150739512	3	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAGTATTGTGCTTAACA	7079	False	NA	NA	False	NA	NA	NA	113064089	113012824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023964_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
26539	chr4	+	678	5	FSM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	-7	21	-7	16	multi-exon	FALSE	canonical	3	977	junction_1	47.9446295219809	5841	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTGTTATTTTTCTAAA	NA	False	NA	NA	False	NA	NA	NA	107736944	107744600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_107737143_107738089_107738149_107740264_107740376_107742113_107742197_107744373
26540	chr10	+	2300	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	1	-111	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	251.145169560897	1	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTATTAAGGATTACTCT	NA	False	NA	NA	False	NA	NA	NA	21171917	21244331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240679_21243540_21243686_21244187
26541	chr17	-	2448	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.7118509476164	2	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGACTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	22580347	22556971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22558623_22558713_22559003_22562616_22562675_22577803_22577970_22578420_22578506_22580148
26542	chr15	+	1148	4	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2471	-5063	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCGACAACTAAGAGTCGAG	NA	False	NA	NA	False	NA	NA	NA	98829734	98832280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98830446_98830575_98830722_98830853_98831079_98832214
26543	chr9	-	3150	19	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	7	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	195.626289290904	1	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTAGGTAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	31043085	31000710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011545_31011667_31011768_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
26544	chr1	+	3366	10	NNC	ENSMUSG00000026554.16	novel	2859	14	NA	NA	-943	0	intron_retention	FALSE	canonical	0	0	junction_5	239.697494540283	1	106	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	172000577	172023033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_172001651_172003049_172003145_172007473_172007585_172013862_172014480_172014919_172015028_172015713_172015797_172016505_172016637_172020084_172020205_172021351_172021469_172022122
26545	chr11	+	2148	8	Fusion	ENSMUSG00000018567.15_ENSMUSG00000018572.11	novel	2214	4	NA	NA	-20	0	multi-exon	FALSE	canonical	3	4	junction_4	308.488944001934	1	15	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	5249	False	NA	NA	False	NA	NA	NA	69882489	69890835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284_69885367_69888422_69888455_69888571_69888665_69889126_69889959_69890063
26547	chr12	-	2222	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	5	2	combination_of_known_splicesites	FALSE	canonical	3	30	junction_16	51.6547659345195	84	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	84664182	84649304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84664056
26548	chr6	+	2242	8	NIC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	-91	-3	intron_retention	FALSE	canonical	3	1887	junction_7	304.99555031883	38	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTGTGTCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	124689207	124693910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693387
26549	chr5	+	1937	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-166	-14	intron_retention	FALSE	non_canonical	0	0	junction_6	1186.81415425276	2	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTGTATAACAATATATT	590	False	NA	NA	False	NA	NA	NA	77099457	77115338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110336_77114117_77114253_77114494
26550	chr8	+	2624	5	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	0	1765	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1212.84734715462	13706	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTTCCTGTGTTGAC	NA	False	NA	NA	False	NA	NA	NA	112667389	112682009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946_112680115_112680877
26551	chr16	-	2671	25	Antisense	novelGene_ENSMUSG00000038084.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	45	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGAGCCGGCTGGGCTCC	1294	False	NA	NA	False	NA	NA	NA	29440489	29398197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_29398387_29404832_29405155_29405787_29405885_29407068_29407176_29407638_29407682_29408485_29408565_29416401_29416513_29421027_29421088_29424333_29424433_29426498_29426587_29427169_29427283_29429483_29429567_29429671_29429751_29430356_29430471_29430726_29430855_29432780_29432852_29432941_29433017_29433866_29433981_29434722_29434789_29435431_29435507_29436936_29437098_29439191_29439351_29439587_29439698_29440282_29440365_29440443
26552	chr17	+	2596	7	FSM	ENSMUSG00000023902.19	ENSMUST00000120967.8	2609	7	8	5	2	2	multi-exon	FALSE	canonical	3	46	junction_6	80.8484521943508	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAGTCCTGATTTTTTTA	887	False	NA	NA	False	NA	NA	NA	23819837	23829988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
26553	chr8	+	3788	5	NNC	ENSMUSG00000031562.17	novel	2493	6	NA	NA	2	-86	intron_retention	FALSE	canonical	0	0	junction_3	186.30267711442	26	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTCATCTTGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	48563201	48593558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_48563284_48564693_48564826_48565002_48565139_48567406_48567579_48590292
26554	chr11	-	2870	7	NNC	ENSMUSG00000042148.9	novel	2915	7	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	99.8710279421526	3	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGAACCTGAGCGTGT	5010	False	NA	NA	False	NA	NA	NA	63970289	63853461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936165_63962363_63962663_63964362_63964497_63970161
26555	chr5	+	3947	19	NIC	ENSMUSG00000029098.18	novel	3976	19	NA	NA	10	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	12.8490764427681	111	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGCCCTGCTTTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	35740404	35771141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_35740479_35741219_35741316_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
26556	chr1	-	1726	6	NIC	ENSMUSG00000026709.11	novel	2126	14	NA	NA	41	2366	intron_retention	FALSE	canonical	3	329	junction_1	40.4791304254427	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACCTTGTTTAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	160898136	160887642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
26557	chr5	-	1762	13	NIC	ENSMUSG00000037364.13	novel	3001	19	NA	NA	-48	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	304.618158063866	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	9361	False	NA	-61	True	NA	NA	NA	137298319	137293976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137298010_137298115_137298228
26558	chr11	-	3034	18	FSM	ENSMUSG00000020918.15	ENSMUST00000006973.12	3043	18	7	2	7	-2	multi-exon	FALSE	canonical	3	387	junction_12	55.3609733498447	494	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGATTGTTTTTTGGGG	6786	False	NA	NA	False	NA	NA	NA	100603284	100595573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
26559	chrX	+	1752	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1793	1	at_least_one_novel_splicesite	FALSE	canonical	3	102	junction_1	978.331643950841	8	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTGCTTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	74147761	74153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74147882_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
26560	chr17	+	3536	21	NNC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	2588	-1	intron_retention	FALSE	canonical	0	0	junction_1	55.7667239489644	1	91	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATGAACTTCATGATCAA	NA	False	NA	NA	False	NA	NA	NA	66433195	66459161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66433278_66441109_66441188_66442816_66442905_66443283_66443494_66445085_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
26561	chr9	-	3713	19	NNC	ENSMUSG00000032480.18	novel	4623	23	NA	NA	8	-648	intron_retention	FALSE	canonical	0	0	junction_2	208.985062080617	1	115	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACCCCAACCTCATCCA	NA	False	NA	NA	False	NA	NA	NA	109946471	109914233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109914640_109914752_109915096_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109945745_109945861_109946425
26562	chr17	-	3643	1	NIC	ENSMUSG00000008668.16	novel	527	5	NA	NA	10	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCGTCTCAGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	34174617	34170974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34171000_34174600
26563	chr15	-	1856	8	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	385	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	744.695993307994	2	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056408	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038892_83044300_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046482_83050303_83050408_83056312
26564	chr11	-	1341	5	NIC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-9	-3	intron_retention	FALSE	canonical	3	21069	junction_3	364.485510685953	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	6458	False	NA	NA	False	NA	NA	NA	69812025	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69808168_69808253_69808328_69808422_69808848_69809976_69810163_69811988
26566	chr14	+	1307	14	NIC	ENSMUSG00000021832.9	novel	813	10	NA	NA	-329	-878	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	465.613675351741	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTAATTCAGTAATT	NA	False	NA	NA	False	NA	NA	NA	45567882	45586284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_45567979_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
26567	chr6	+	2072	12	NNC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	45	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	189.806034094052	1500	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGTGTTGTTAAGTCAAG	NA	False	NA	NA	False	NA	NA	NA	72575584	72584470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582249_72582360_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
26569	chr10	-	2213	17	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-7	-905	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	295.790195651834	24	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGGTGCAAACCTTACCC	NA	False	NA	NA	False	NA	NA	NA	77845577	77823685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828320_77835710_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
26571	chr10	-	2122	10	NIC	ENSMUSG00000019814.6	novel	2297	11	NA	NA	0	-507	intron_retention	FALSE	canonical	3	645	junction_6	43.5813415733538	2182	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTCAAATGTTTGGATA	NA	False	NA	NA	False	NA	NA	NA	13068912	13054390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
26572	chr1	+	1812	14	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	108	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	543.541868960993	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGTTTTGTGATCT	NA	False	NA	NA	False	NA	NA	NA	59724320	59750665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737680_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
26573	chr8	-	1751	13	Antisense	novelGene_ENSMUSG00000031787.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTAAGAGCCAGGCAGG	NA	False	NA	NA	False	NA	NA	NA	95825687	95821332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_95821461_95821797_95821871_95821977_95822128_95822230_95822423_95822514_95822648_95822983_95823034_95823838_95823917_95824026_95824147_95824240_95824391_95824580_95824660_95824733_95824807_95824944_95825062_95825279
26574	chr12	+	2159	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	-63	0	7	0	multi-exon	TRUE	canonical	3	358	junction_5	42.0133700610757	571	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTATTCTTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	51424299	51496884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
26576	chr3	+	2305	8	NNC	ENSMUSG00000028180.19	novel	2924	10	NA	NA	9	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	298.628975998851	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATGTTCTAAACTCATA	NA	False	NA	NA	False	NA	NA	NA	157240033	157254024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157248848_157248882_157250600_157250760_157252311
26578	chr16	+	3124	16	NNC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	7	86	intron_retention	FALSE	canonical	0	0	junction_1	56.8772557550223	3	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAAACGTGATACTTTT	6408	False	NA	NA	False	NA	NA	NA	44167783	44207592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190742_44191042_44191309_44192898_44193029_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
26579	chr1	+	1918	4	NNC	ENSMUSG00000008475.14	novel	1914	4	NA	NA	-21	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	649.932817040859	1402	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTCTTAATTGAATAC	NA	False	NA	NA	False	NA	NA	NA	152642271	152651331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_152642621_152644613_152644685_152647114_152647292_152650010
26580	chr3	-	2889	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	51	17	-19	-17	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	1	118	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTAAAAATGTGTTT	2767	False	NA	NA	False	NA	NA	NA	65299993	65287092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
26581	chr7	-	1862	5	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	679.675841854041	95	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002321	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995630_98996320_98996365_98996472_98996572_98998009_98998672_99002259
26582	chr7	-	2280	12	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-25	-2	intron_retention	FALSE	canonical	3	712	junction_6	47.6203998233829	664	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTTGAGCCTGGTTTT	7962	False	NA	NA	False	NA	NA	NA	126641606	126626905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
26583	chrX	+	1832	15	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	85	478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1046.19613215629	1	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAAAGGATAATTACCC	NA	False	NA	NA	False	NA	NA	NA	20524744	20548922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524968_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539139_20548816
26584	chrX	+	2277	15	NNC	ENSMUSG00000025287.16	novel	1752	15	NA	NA	13	-138	intron_retention	FALSE	canonical	0	0	junction_2	354.564615164191	4	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	154045513	154080504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_154045671_154046590_154046723_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576
26586	chrX	+	1777	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	-31	6	-31	2	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	2579	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	NA	False	NA	NA	NA	154045407	154080644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
26587	chr4	-	2750	10	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_7	269.519233606714	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACGGACTGTGTTTGTTG	6787	False	NA	NA	False	NA	NA	NA	126096440	126057878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126080227_126080382_126088109_126088198_126096362
26588	chr18	+	1829	14	NIC	ENSMUSG00000034484.9	novel	2067	15	NA	NA	-5	-36	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	335.886075360831	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAATATTAGTAATAAAT	NA	False	NA	NA	False	NA	NA	NA	53309425	53353901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_53309560_53322726_53322845_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
26589	chr9	+	627	6	ISM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	5	10292	5	435	5prime_fragment	FALSE	canonical	3	540	junction_1	791.947826564351	89	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTAGTTAATAAATAGTTA	9574	False	NA	NA	False	NA	NA	NA	64188893	64201782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604
26590	chr9	+	205	1	FSM	ENSMUSG00000088254.3	ENSMUST00000157629.3	135	1	-67	-3	-67	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAACTTTTTAAACA	NA	False	NA	NA	False	NA	NA	NA	64203145	64203350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64203100_64203400
26591	chr16	-	2368	1	FSM	ENSMUSG00000065572.3	ENSMUST00000083638.3	82	1	72	-2358	72	2358	mono-exon	FALSE	NA	NA	NA	NA	NA	15	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTGGAGTCTGCACTGC	NA	False	NA	NA	False	NA	NA	NA	16941934	16939566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16939600_16941900
26592	chr13	-	2790	15	NNC	ENSMUSG00000021468.9	novel	2606	15	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_14	43.1367072248692	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGTCTGTTTGGATAGCA	1865	False	NA	NA	False	NA	NA	NA	53531397	53486784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531107
26593	chr10	+	2780	12	Intergenic	novelGene_3423	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	316	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGAGCTTGGCGGGGCGGA	NA	False	NA	NA	False	NA	NA	NA	34179604	34294580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_34180978_34186298_34186462_34189575_34189740_34190747_34190865_34198604_34198702_34200282_34200459_34274109_34274195_34275733_34275813_34279645_34279786_34283532_34283603_34287363_34287456_34294356
26594	chr8	-	2369	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	250.528084229402	1	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615020	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591876_96593444_96593600_96596099_96596266_96597407_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
26595	chr10	+	2410	12	Antisense	novelGene_ENSMUSG00000020166.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCACCTAATAAGAAAATT	6011	False	NA	NA	False	NA	NA	NA	116321076	116343087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_116322191_116328195_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334146_116334240_116334368_116335248_116335372_116337096_116337223_116339939_116340024_116342136_116342316_116342944
26596	chr12	-	3840	10	FSM	ENSMUSG00000021257.15	ENSMUST00000021682.9	3850	10	4	6	4	-6	multi-exon	FALSE	canonical	3	66	junction_1	10.9341463112378	108	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTACGTTGTTAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	86773230	86747281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488_86764616_86767003_86767438_86768084_86768155_86768614_86768842_86769618_86770195_86773103
26597	chr1	+	4994	10	NNC	ENSMUSG00000073609.10	novel	3459	10	NA	NA	0	1518	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	13.0365109321456	68	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTTCCTCAGCATGG	NA	False	NA	NA	False	NA	NA	NA	93752961	93781588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93753303_93754023_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
26598	chr17	-	4272	21	NIC	ENSMUSG00000001229.10	novel	3374	21	NA	NA	635	125	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	38.0818526335051	119	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAAAGTGGTGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	56525254	56493681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56494462_56495267_56495380_56496322_56496466_56496761_56496881_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408
26599	chr7	-	3356	17	NNC	ENSMUSG00000025474.10	novel	3341	17	NA	NA	-8	2	intron_retention	FALSE	non_canonical	0	0	junction_14	126.138750489293	97	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGAGTTTCTGTCTTGGC	NA	False	NA	NA	False	NA	NA	NA	139616253	139575878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611103_139612031_139612161_139613525_139613712_139616008
26600	chr7	+	1982	9	FSM	ENSMUSG00000025509.16	ENSMUST00000164016.8	2625	9	-13	656	-13	-5	multi-exon	FALSE	canonical	3	56	junction_3	8.3132048573339	454	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTGCCTTCCTCACTTC	9932	False	NA	NA	False	NA	NA	NA	141035097	141040000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
26603	chr15	-	2679	10	NNC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-39	-2	intron_retention	FALSE	canonical	0	0	junction_1	172.394322612828	1	54	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACACTGTCTTCTTGTA	8627	False	NA	NA	False	NA	NA	NA	76501087	76496584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76496864_76496962_76497143_76497403_76497712_76497797_76497918_76497986_76498146_76498256_76498345_76498686_76498859_76498949_76499114_76499243_76499440_76500074
26604	chr1	-	2910	5	NNC	ENSMUSG00000058407.13	novel	3472	4	NA	NA	91	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.652621871364	64	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGCTCTTAACCTTTG	NA	False	NA	NA	False	NA	NA	NA	38036214	38026892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_38028630_38028718_38029539_38033072_38033192_38034713_38034923_38036189
26605	chr2	-	2907	6	NIC	ENSMUSG00000038671.16	novel	1087	7	NA	NA	-1	-8	intron_retention	FALSE	canonical	3	258	junction_2	27.4255355462751	956	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGCAGTAAAGAGTTAGC	6141	False	NA	NA	False	NA	NA	NA	181007132	180999633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181003266_181005806_181006192_181006397_181006505_181007011
26607	chr2	+	2734	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110028.8	2308	5	252	-678	15	-33	multi-exon	FALSE	canonical	3	74	junction_1	188.862383761299	1117	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGTAATAAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	144112834	144123114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_144112935_144113834_144114405_144118234_144118452_144120913_144121047_144121400
26608	chr6	+	1634	5	NNC	ENSMUSG00000012396.13	novel	1995	5	NA	NA	297	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2174.94797351569	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684823	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684882_122688514_122688763_122689587_122689675_122690100_122690523_122690767
26609	chr10	-	3942	17	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-8991	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	95.7587300197742	1	133	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATCTAAACATGTAACATA	NA	False	NA	NA	False	NA	NA	NA	61187097	61155454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182647_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674
26610	chr4	+	3677	3	NNC	ENSMUSG00000029038.10	novel	1555	2	NA	NA	0	2336	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	837.5	179	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACCAACAGACTTCCCA	NA	False	NA	NA	False	NA	NA	NA	155789580	155803471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155789919_155799918_155803164_155803377
26612	chr8	-	2255	12	NIC	ENSMUSG00000057788.14	novel	2137	13	NA	NA	2	135	intron_retention	FALSE	canonical	3	250	junction_8	20.4729210389668	42	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGACTTGAGAATGGGGT	9959	False	NA	NA	False	NA	NA	NA	70755111	70746100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
26613	chrY	-	2602	2	Intergenic	novelGene_4704	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	94	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACGGTTTCCGTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	43886913	43879917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_-_43882222_43886615
26617	chr13	+	2101	9	FSM	ENSMUSG00000057649.7	ENSMUST00000223446.2	2342	9	235	6	235	-6	multi-exon	FALSE	canonical	3	154	junction_2	8.20727573558973	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTAACTCTGATCACCCCG	NA	False	NA	NA	False	NA	NA	NA	74092249	74109002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
26618	chr7	+	2786	20	NNC	ENSMUSG00000023072.15	novel	2825	20	NA	NA	15	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	49.2512918682599	310	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACACTTTTGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	35096494	35138107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122833_35124084_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339_35129537_35131942_35132033_35134898_35135069_35137752
26619	chr18	+	1130	1	Genic_Genomic	ENSMUSG00000103081.4	novel	NA	NA	NA	NA	-81	-79021	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGGAGGCATGGCCTCAG	3861	False	NA	NA	False	NA	NA	NA	37894772	37895902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_37894800_37895900
26620	chr18	+	3068	4	FSM	ENSMUSG00000103081.4	ENSMUST00000195764.2	4615	4	1550	-3	1550	3	multi-exon	FALSE	canonical	3	10	junction_1	100.00333327778	8	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	5492	False	NA	NA	False	NA	NA	NA	37896403	37974926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_37897353_37958073_37958133_37966317_37966407_37972955
26621	chr13	-	3344	23	NNC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	241	3157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	109.751757831515	1	56	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGGTTGTACTTCTTA	NA	False	NA	NA	False	NA	NA	NA	99027265	98980408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003613_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184
26623	chr7	+	2277	18	Antisense	novelGene_ENSMUSG00000078762.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATGGCGCCCATCTATG	NA	False	NA	NA	False	NA	NA	NA	30353171	30364400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30353484_30353597_30353728_30356373_30356503_30356585_30356691_30357017_30357172_30357264_30357343_30357926_30358090_30358276_30358415_30358491_30358554_30358715_30358839_30358964_30359025_30359520_30359601_30359682_30359753_30361052_30361216_30361294_30361400_30362212_30362399_30362636_30362710_30364254
26625	chr1	+	3332	12	Fusion	ENSMUSG00000026455.15_ENSMUSG00000101061.2	novel	937	3	NA	NA	33	-6	multi-exon	TRUE	canonical	3	12	junction_1	47.209573199224	189	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGGCTTTAAGAGAATT	NA	False	NA	NA	False	NA	NA	NA	134363398	134418605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_134363609_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
26627	chr2	-	2156	16	Antisense	novelGene_ENSMUSG00000027642.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGACGCTGGCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	157167971	157125555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_157125696_157131445_157131542_157132454_157132633_157136072_157136147_157137171_157137307_157139299_157139478_157141459_157141578_157144323_157144434_157152124_157152212_157154395_157154497_157156683_157156892_157158041_157158122_157159860_157159960_157162036_157162114_157163654_157163783_157167624
26628	chr14	-	2588	9	NIC	ENSMUSG00000040472.16	novel	2153	15	NA	NA	317	-1	intron_retention	FALSE	canonical	0	0	junction_6	175.990367279008	3	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCTGCCAAGCTACCATT	NA	False	NA	NA	False	NA	NA	NA	55959316	55953782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956209_55956320_55956989_55957080_55957164_55957760_55957965_55958232_55958421_55958592
26631	chr2	-	3343	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	36	268	36	-268	multi-exon	FALSE	canonical	3	78	junction_1	10.5	720	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTTAGCCCATAGGGAG	8447	False	NA	NA	False	NA	NA	NA	30793273	30779750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30782839_30790878_30790962_30793101
26632	chr1	+	2792	7	ISM	ENSMUSG00000023150.15	ENSMUST00000097543.8	3337	14	14523	3	-2206	-3	3prime_fragment	FALSE	canonical	3	1339	junction_1	37.1842260463582	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAATCCTTGCACTGTGG	NA	False	NA	NA	False	NA	NA	NA	151234791	151240163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
26633	chr16	-	2741	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	296.566912506689	1	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTATCATTGTACCCAAA	8116	False	NA	NA	False	NA	NA	NA	4867721	4831766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832620_4833176_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
26634	chr13	-	2740	19	Antisense	novelGene_ENSMUSG00000114535.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	72	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGGGGAACCGGCAGCAGG	NA	False	NA	NA	False	NA	NA	NA	59778524	59733488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_59733602_59733963_59734132_59745852_59745967_59747540_59747616_59748715_59748884_59755057_59755125_59755199_59755244_59755956_59756656_59757289_59757406_59760448_59760627_59764554_59764618_59765733_59765845_59770681_59770745_59772316_59772416_59773230_59773419_59775695_59775828_59776728_59776798_59777811_59777953_59778392
26636	chr18	+	1665	5	Antisense	novelGene_ENSMUSG00000047879.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAACAAAAACAAATATTT	NA	False	NA	NA	False	NA	NA	NA	10008866	10024681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_10010083_10012212_10012269_10016534_10016645_10017990_10018098_10024505
26638	chr7	+	3425	17	NIC	ENSMUSG00000030852.19	novel	3310	16	NA	NA	6	-18	intron_retention	FALSE	canonical	3	9	junction_16	85.1287398224008	14	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGACCACATCCTCTA	NA	False	NA	NA	False	NA	NA	NA	130247965	130363161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130248161_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130362905
26639	chr11	-	2021	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	11	-411	9	411	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	524	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTCCTAGTGAATCACAG	4222	False	NA	NA	False	NA	NA	NA	96002779	95989740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
26641	chr5	+	1131	6	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	162	-99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8921.19921535216	24	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGCTTTGTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	115697843	115701687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115699064_115699157_115699309_115699452_115699578_115700484_115700626_115701341
26642	chr16	-	3412	5	FSM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	24	4	24	-4	multi-exon	FALSE	canonical	3	117	junction_1	14.2894191624432	216	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGATAATTGTATGGTGT	NA	False	NA	NA	False	NA	NA	NA	10131808	10099616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
26643	chr15	+	488	1	Genic_Genomic	ENSMUSG00000046434.17	novel	NA	NA	NA	NA	-444	-4480	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAGCATCGCTGAAGGC	NA	False	NA	NA	False	NA	NA	NA	103148414	103148902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_103148400_103148900
26644	chr17	-	1780	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3197	7352	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	52	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGATGCCGCGGGGCCTG	NA	False	NA	NA	False	NA	NA	NA	13143372	13135347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136783_13136943_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142107_13142297_13142415_13142580_13143145
26645	chrX	+	2714	8	NNC	ENSMUSG00000019087.14	novel	2157	10	NA	NA	4	-3	intron_retention	FALSE	canonical	2	41	junction_6	229.301245579892	1	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTTGGGCTTCGTGTC	NA	False	NA	NA	False	NA	NA	NA	73340752	73348292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344971_73345541_73345628_73345967_73346055_73346827_73346876_73346963
26646	chr6	+	3027	4	ISM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	3856	5	3856	-5	3prime_fragment	FALSE	canonical	3	1209	junction_2	66.5782747348312	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTACCTTTGGTTGCCTC	6799	False	NA	NA	False	NA	NA	NA	122289813	122293743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122292126_122292262_122292394_122293008_122293136_122293286
26647	chr12	-	3153	8	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	-24	-13	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	181.049998731887	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTAATGTTTCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	69771671	69737219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69759395_69759528_69768085_69768238_69768851_69768968_69771427
26648	chr11	+	3872	5	Antisense	novelGene_ENSMUSG00000035208.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCGCAGAGCGCGCGGAG	816	False	NA	NA	False	NA	NA	NA	82892948	82910912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_82894718_82894883_82895609_82904191_82904328_82907480_82908548_82910737
26649	chr11	+	5040	4	FSM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	20	2975	0	-2975	multi-exon	FALSE	canonical	3	164	junction_1	44.0782133132559	1511	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAGCCTTGGGTAATGA	NA	False	NA	NA	False	NA	NA	NA	78717429	78734721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78717463_78726843_78726985_78728915_78729009_78729948
26650	chr3	-	2511	13	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	180.039559696072	6	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	157742225	157716555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737207_157742171
26651	chr3	-	1824	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	37	1709	-5	38	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	79	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTCTCTGCTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	108352477	108333889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
26654	chr7	-	2901	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	26	456	26	-456	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	1	132	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165557	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
26655	chr7	+	2433	13	NNC	ENSMUSG00000030727.13	novel	2234	13	NA	NA	-872	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.1757713807899	338	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCAGTTGCCTTGTGCC	NA	False	NA	NA	False	NA	NA	NA	126027058	126045070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126027224_126028198_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043490_126043694_126043751_126043991_126044109_126044468
26656	chrX	+	1895	9	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-66	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1254.41474775092	26	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473094	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487956_100491663
26657	chr11	-	2698	10	NNC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	-15	-1	at_least_one_novel_splicesite	FALSE	canonical	3	152	junction_9	132.005985648052	581	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7731	False	NA	NA	False	NA	NA	NA	113456620	113135679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
26658	chr14	-	3473	6	FSM	ENSMUSG00000022120.5	ENSMUST00000022716.4	3420	6	-53	0	-40	0	multi-exon	FALSE	canonical	3	75	junction_2	11.8490505948789	119	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTTGATGTCATCAT	NA	False	NA	NA	False	NA	NA	NA	104760121	104714971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_104717734_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
26659	chr5	-	3645	19	NIC	ENSMUSG00000018974.8	novel	4447	19	NA	NA	-14	2	combination_of_known_junctions	FALSE	canonical	3	34	junction_15	91.6478768621147	217	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGCATTGCAGCTGG	NA	False	NA	NA	False	NA	NA	NA	113909713	113880504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897388_113899155_113899341_113900889_113900995_113902133_113902261_113909381
26661	chr5	-	4256	18	NIC	ENSMUSG00000036553.17	novel	4246	18	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	23.9841354717084	10	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTATCTTCTAGGTGT	NA	False	NA	NA	False	NA	NA	NA	35897389	35854524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871456_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35897301
26662	chr1	+	2180	6	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	4541	junction_5	560.347891938571	884	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863375_160863552_160863585_160863777_160865118_160865564_160865608_160865794_160865843_160866026
26664	chr10	-	3338	3	NIC	ENSMUSG00000000901.18	novel	2288	8	NA	NA	-311	1	intron_retention	FALSE	canonical	3	216	junction_2	13.5	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTGTCTGTTTTTCTTTG	9557	False	NA	NA	False	NA	NA	NA	75763835	75759054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75759950_75761253_75762824_75762962
26665	chr13	-	5471	18	FSM	ENSMUSG00000021706.15	ENSMUST00000022217.9	6150	18	49	630	49	109	multi-exon	FALSE	canonical	3	21	junction_14	7.96662588726756	42	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGCATTCTTTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	92667327	92624245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_92625132_92629010_92629179_92630365_92630472_92631442_92631606_92636720_92636802_92640446_92640595_92640983_92641089_92642167_92642251_92644629_92644855_92645398_92645555_92646508_92646632_92647985_92648365_92650294_92650438_92653038_92653201_92655974_92656072_92657623_92659840_92660737_92660847_92667206
26666	chr1	-	3463	14	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	9	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	599.791196409168	1	194	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGTTGAAAATAAAGAG	NA	False	NA	NA	False	NA	NA	NA	181669917	181642916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656467_181659102_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
26669	chr9	-	3546	11	NNC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	-23	-421	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	198.819239511673	2	91	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTTAAACATATTAGCAGA	NA	False	NA	NA	False	NA	NA	NA	75466962	75405409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75451951_75452229_75466781
26670	chr4	+	2852	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	-1	19	-1	-19	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	6	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGCTGAGTTGTTTGCT	24	True	NA	NA	False	NA	NA	NA	11558970	11615786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
26671	chr14	+	2184	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	-44	-1	-44	1	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	849	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCAGTAGTTTTTATAC	8842	False	NA	NA	False	NA	NA	NA	122115987	122258447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
26672	chr1	+	2204	20	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	247.526903319692	64	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3046	False	NA	NA	False	NA	NA	NA	171910377	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939721_171949647
26673	chr11	+	1392	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-33	-17843	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACAAATACTGCTCTCGC	9398	False	NA	NA	False	NA	NA	NA	88861044	88863937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861172_88861243_88861851_88862193_88862314_88863399
26674	chrX	-	4189	2	Genic_Genomic	ENSMUSG00000052157.5	novel	1551	1	NA	NA	-388	3498	multi-exon	FALSE	canonical	3	17	junction_1	0	44	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTCATCTATTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	154089133	154083696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_154086142_154087389
26675	chr9	+	3879	24	FSM	ENSMUSG00000034252.15	ENSMUST00000165607.9	3495	24	26	-410	26	145	multi-exon	FALSE	canonical	0	0	junction_3	90.822246885334	207	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTACAGATGCATCTTTA	NA	False	NA	NA	False	NA	NA	NA	79974800	80051598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_79974855_79994711_79994806_79997130_79997189_79999548_79999695_80000818_80000924_80006167_80006189_80010975_80011047_80018592_80018736_80021008_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
26676	chr13	-	2697	12	Antisense	novelGene_ENSMUSG00000021474.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCGGCCCCGCGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	54262365	54225887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_54225951_54239466_54239641_54242905_54243078_54245240_54245341_54246391_54246466_54247017_54247104_54247870_54248000_54250748_54250798_54258818_54258865_54259759_54259813_54260523_54260629_54260719
26677	chr2	+	2266	14	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-239	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	585.296566712908	1	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84870216	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872590_84872660_84873049_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
26678	chr3	-	7036	18	NIC	ENSMUSG00000061175.13	novel	7299	18	NA	NA	8	-301	combination_of_known_junctions	TRUE	canonical	3	39	junction_17	21.062273788996	96	155	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTTTTGAATTTATCT	NA	False	NA	NA	False	NA	NA	NA	79439175	79363581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_79367049_79369435_79369552_79372854_79373056_79386793_79386951_79387865_79389187_79396265_79396436_79396552_79396700_79400138_79400228_79400582_79400785_79407644_79407775_79413513_79413586_79415145_79415236_79415393_79415495_79419637_79419710_79419804_79419906_79422409_79422557_79425371_79425499_79438849
26679	chr16	+	2547	11	FSM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	232	-1	-3	1	multi-exon	FALSE	canonical	3	57	junction_2	27.1632104140877	326	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTTACTGTCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	10010807	10060916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
26682	chr4	+	3097	11	ISM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	465	1223	0	-4	intron_retention	FALSE	canonical	3	310	junction_8	50.2622124463299	469	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCTTGCACCTTAATT	-11	True	NA	NA	False	NA	NA	NA	21848047	21875252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585
26685	chr2	-	3256	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	124	12	-19	-12	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	19	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCCTGTATCAGGT	NA	False	NA	NA	False	NA	NA	NA	125700935	125672235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
26686	chr4	-	2132	13	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.299971089907	30	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149251126	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235223_149235357_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
26688	chr3	-	3379	6	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	0	-406	intron_retention	FALSE	canonical	3	1645	junction_5	232.183892636849	14	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTTGCGCATCATTCT	NA	False	NA	NA	False	NA	NA	NA	54642456	54636508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
26689	chr4	+	3548	9	NNC	ENSMUSG00000085334.8	novel	1970	3	NA	NA	11821	11740	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	129	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGCTCCGCCCCTCTCCC	NA	False	NA	NA	False	NA	NA	NA	126941395	126954931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126943722_126944530_126944666_126945067_126945218_126945625_126945666_126948002_126948176_126951193_126951387_126952585_126952824_126953302_126953453_126954788
26690	chr6	+	2593	16	FSM	ENSMUSG00000029802.14	ENSMUST00000031822.13	5717	16	-101	3225	-101	-60	multi-exon	FALSE	canonical	3	51	junction_1	36.1961323900773	212	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTTCTTTTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	58573554	58669436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
26691	chr11	-	2128	10	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	1045	-15	intron_retention	FALSE	non_canonical	0	0	junction_9	307.99871732938	2	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGGATCCTTTGAAGAT	9575	False	NA	NA	False	NA	NA	NA	69571627	69563961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69569111_69569447_69569560_69569647_69569888_69570968_69571357_69571403
26692	chr11	+	2148	12	NNC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-52	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	188.150853842476	12	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTCTGAATAGTATCTG	4282	False	NA	NA	False	NA	NA	NA	102321291	102327624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102321367_102323790_102323936_102324050_102324207_102324736_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
26694	chr15	-	1537	5	NNC	ENSMUSG00000072235.7	novel	1803	4	NA	NA	152	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1841.43551339709	3	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	NA	False	NA	NA	NA	98851432	98847717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98848485_98848598_98848896_98849068_98849218_98849349_98849573_98851331
26695	chr17	-	2917	1	FSM	ENSMUSG00000047407.18	ENSMUST00000190687.2	3145	1	2683	-2455	39	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTGCAATGAAGAGCAT	NA	False	NA	NA	False	NA	NA	NA	71154126	71151209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71151200_71154100
26696	chr9	+	1618	4	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	696.974573105472	42	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183583	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192536_108212247_108212381_108213846
26697	chr18	-	2654	8	Antisense	novelGene_ENSMUSG00000024525.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCGCCTTCCCGCCAAG	NA	False	NA	NA	False	NA	NA	NA	67453059	67422370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_67422577_67435245_67435377_67439539_67439844_67442119_67442166_67443714_67443823_67448686_67448798_67449950_67450102_67451462
26698	chr15	+	1683	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	-10	3	-1	0	multi-exon	FALSE	canonical	3	554	junction_1	173.470458580128	2953	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGTGTGATGGCTC	NA	False	NA	NA	False	NA	NA	NA	103181326	103208292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
26699	chr17	-	5253	3	NNC	ENSMUSG00000071267.12	novel	2481	3	NA	NA	6	2864	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	28	7	98	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAAACCCAACGAACTCTT	NA	False	NA	NA	False	NA	NA	NA	22181426	22155861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22160832_22172868_22172962_22181236
26700	chr9	+	3217	13	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	28	-8	intron_retention	FALSE	non_canonical	0	0	junction_12	290.910961464157	1	107	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTGCCTCTTAGGTTCA	5540	False	NA	NA	False	NA	NA	NA	35122478	35128302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
26701	chr2	+	2076	17	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	135	-65	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	782.603896856513	1	45	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGAAAAGTTGAAATC	NA	False	NA	NA	False	NA	NA	NA	157121200	157167911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125629_157125698_157131451_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
26702	chr11	-	2668	18	NIC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	100	-86	combination_of_known_junctions	FALSE	canonical	3	6	junction_17	69.5423995036102	2	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCAGAGGTCTATATT	3757	False	NA	NA	False	NA	NA	NA	54846773	54801700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846673
26703	chr11	+	4771	30	NIC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	-61	-1	combination_of_known_splicesites	FALSE	canonical	1	5	junction_29	28.1523796575085	162	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGGTGCCAGTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	87295829	87446648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87295997_87324634_87324772_87365229_87365345_87375525_87375692_87377074_87377212_87383865_87383948_87385777_87385909_87387025_87387140_87388655_87388780_87390309_87390489_87400393_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356_87442467_87446309
26704	chrUn_JH584304v1	-	2504	9	Intergenic	novelGene_4692	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	14	junction_1	346.534788116576	3	38	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTTTCTGCTCCCAAAT	NA	False	NA	NA	False	NA	NA	NA	60304	53201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53271_53535_53833_54318_54480_54720_54868_55111_55702_56985_57152_57410_57500_58563_58836_59591
26705	chr5	+	1486	8	NIC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	0	-8	intron_retention	FALSE	canonical	3	4657	junction_7	295.607365073528	11336	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCAAGGTCTCTGTAGA	609	False	NA	NA	False	NA	NA	NA	135807489	135819237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
26706	chr11	-	542	1	Intergenic	novelGene_2191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTCCCTGTTTCAAGAA	3202	False	NA	NA	False	NA	NA	NA	3101589	3101047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_3101000_3101600
26707	chr9	+	6503	26	NIC	ENSMUSG00000032409.16	novel	8056	47	NA	NA	-3	4304	intron_retention	FALSE	canonical	3	80	junction_12	14.9507993097359	9	61	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTGAAATTAATATAGTT	NA	False	NA	NA	False	NA	NA	NA	95739755	95792709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_95739837_95743421_95743514_95744835_95744986_95747020_95749739_95751934_95752126_95752672_95752826_95753056_95753250_95753486_95753741_95756130_95756322_95756403_95756505_95756755_95756928_95757646_95757818_95760507_95760703_95763278_95763465_95765168_95765262_95767394_95767526_95770152_95770297_95772815_95772910_95775467_95775594_95779588_95779796_95781089_95781204_95785715_95785832_95787790_95787912_95789348_95789487_95790302_95790496_95792531
26708	chr11	-	2125	11	Antisense	novelGene_ENSMUSG00000059552.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	11	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAACTGAAGCTACAGAA	NA	False	NA	NA	False	NA	NA	NA	69482695	69471236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_69471341_69471878_69472290_69477714_69477798_69478177_69478458_69479188_69479373_69479450_69479567_69479967_69480075_69480396_69480534_69480612_69480687_69481479_69481587_69482173
26709	chr16	+	2620	14	NNC	ENSMUSG00000005980.16	novel	1286	10	NA	NA	886	25333	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	96	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCGTATGAACACCTAG	NA	False	NA	NA	False	NA	NA	NA	3857879	3883221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3858089_3858222_3858292_3861810_3861958_3862471_3863452_3863748_3863929_3867213_3867358_3870724_3870793_3871341_3871466_3872617_3872773_3873659_3873735_3874193_3874304_3878620_3878784_3880195_3880261_3883090
26710	chr9	+	2206	6	FSM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	-200	3	2	-3	multi-exon	FALSE	canonical	0	0	junction_1	392.751626349274	1333	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACTGGTGTTGTAATTA	NA	False	NA	NA	False	NA	NA	NA	55116273	55131712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
26711	chr17	+	2555	10	NIC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	10	-12	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	138.283926920103	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACGTAGAAATGTCCATT	NA	False	NA	NA	False	NA	NA	NA	27136074	27151545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_27136260_27139770_27139906_27139993_27140094_27141649_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
26712	chr2	-	3495	18	NIC	ENSMUSG00000036893.18	novel	4539	26	NA	NA	-3947	22	combination_of_known_splicesites	TRUE	canonical	1	1	junction_17	64.8096494161128	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTTCATTATGACAC	NA	False	NA	NA	False	NA	NA	NA	24746691	24680784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_24682143_24682292_24682469_24691518_24691598_24692032_24692120_24693025_24693142_24693954_24694033_24694771_24694917_24695085_24695254_24696225_24696381_24703538_24703644_24705742_24705845_24714956_24715080_24726407_24726515_24727587_24727671_24728712_24728881_24729541_24729769_24730647_24730792_24746617
26713	chr19	-	1751	16	ISM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	38	6706	-2	-2288	5prime_fragment	FALSE	canonical	3	495	junction_15	85.2821721632891	12	36	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGATCCTGCGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	4978277	4963962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
26714	chr5	+	2561	15	ISM	ENSMUSG00000005514.15	ENSMUST00000005651.13	2636	16	181	0	59	0	intron_retention	FALSE	canonical	3	231	junction_9	20.3675412039322	20	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	2082	False	NA	NA	False	NA	NA	NA	135718070	135764180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474
26715	chr11	+	4949	20	FSM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	10	-2309	10	-5	multi-exon	FALSE	canonical	3	209	junction_9	44.9846388062843	57	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATGCCAGAGTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	4587756	4635694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
26716	chr10	-	2620	17	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	1112	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1331.47777247454	1	134	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGTGCTTATTTTCATA	NA	False	NA	NA	False	NA	NA	NA	86540261	86526704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527505_86527613_86527997_86528160_86528249_86528329_86529240_86529374_86529768_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157
26717	chr7	-	3730	29	NNC	ENSMUSG00000030491.17	novel	3651	30	NA	NA	26	2145	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	215.866597126795	2	45	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGGCCACAGTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	35237144	35166377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35166404_35168378_35168618_35169090_35169158_35169241_35169396_35169477_35169592_35169677_35169746_35170616_35170727_35175357_35175531_35177478_35177572_35179565_35179777_35180441_35180630_35182464_35182565_35184629_35184851_35185844_35185963_35186578_35186708_35186956_35187149_35188061_35188135_35189354_35189541_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
26718	chr16	+	1476	7	ISM	ENSMUSG00000022724.16	ENSMUST00000120674.8	1753	9	13	3792	13	-1942	5prime_fragment	FALSE	canonical	3	233	junction_3	29.8035232816525	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACTTGACTATGACATAA	NA	False	NA	NA	False	NA	NA	NA	59292197	59308239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790
26719	chr8	-	1738	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	12	-55	-7	55	multi-exon	FALSE	canonical	3	249	junction_1	0	3643	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTTTGAGGAACAATCTA	NA	False	NA	NA	False	NA	NA	NA	79235515	79231842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_79233493_79235427
26721	chr12	-	3984	12	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-97	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	37.1632538674499	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGGCCATCGTATGGAT	NA	False	NA	NA	False	NA	NA	NA	83643693	83593623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83643518
26722	chr18	+	2879	11	Antisense	novelGene_ENSMUSG00000003778.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	34732979	34742105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34733295_34735267_34735303_34735726_34735832_34736761_34736936_34737649_34737722_34737885_34737977_34738526_34738741_34739471_34739520_34739727_34739821_34740090_34740547_34740829
26723	chr15	+	3369	10	ISM	ENSMUSG00000022272.18	ENSMUST00000022882.12	5880	21	47199	0	19919	0	3prime_fragment	FALSE	canonical	3	658	junction_6	56.2257355072687	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGCTTTCCTTGAGT	NA	False	NA	NA	False	NA	NA	NA	25800194	25813757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206
26724	chr2	+	4240	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	195	-2803	9	2103	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	372	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGAGTAATTGCTTCATT	NA	False	NA	NA	False	NA	NA	NA	80447583	80464808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
26725	chr3	+	2855	5	FSM	ENSMUSG00000015749.13	ENSMUST00000171368.8	878	5	-39	-1938	3	-10	multi-exon	FALSE	canonical	3	38	junction_1	694.522497835743	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAATGACTAGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	95836597	95854692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95836963_95844431_95844508_95845193_95845352_95851618_95851674_95852491
26726	chr2	-	4803	8	NNC	ENSMUSG00000026860.17	novel	1823	9	NA	NA	52	-58	intron_retention	FALSE	canonical	3	45	junction_6	107.782850477907	1	74	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGGCCCCAGGCCCCTC	NA	False	NA	NA	False	NA	NA	NA	30249200	30235210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30240393_30240595_30240730_30244864_30244994_30245294_30245415_30249154
26727	chr10	-	1995	15	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	20	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	638.833631052143	1	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCTTACTGATCTGTAT	NA	False	NA	NA	False	NA	NA	NA	116899699	116886903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893979_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
26728	chr2	-	2590	15	NIC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-11	-20	intron_retention	FALSE	canonical	3	278	junction_14	33.3787785448008	4	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCCATCCACCCCCCTC	NA	False	NA	NA	False	NA	NA	NA	164699564	164681457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
26730	chr3	-	2516	17	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	-27	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.734677667941	1	66	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGATATTTTTCATATGG	NA	False	NA	NA	False	NA	NA	NA	95763120	95737926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739875_95739935_95741064_95741149_95741395_95741515_95742665_95742838_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95757006_95757103_95758874_95759006_95760755_95760950_95763060
26731	chr17	-	3252	6	NNC	ENSMUSG00000024026.14	novel	9865	6	NA	NA	-10	1605	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1296.02762316241	4	76	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCCAAACTGAGGAGTCA	NA	False	NA	NA	False	NA	NA	NA	30831596	30810229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30812945_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
26732	chr14	+	3817	14	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	17.0588955433745	70	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	NA	NA	NA	26836819	27125868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26836881_26837154_26837273_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
26733	chr9	+	3935	7	FSM	ENSMUSG00000042787.16	ENSMUST00000214462.2	2624	7	-40	-1271	4	-7	multi-exon	FALSE	canonical	2	5	junction_1	29.590257405662	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGACCGGTGATTGGC	NA	False	NA	NA	False	NA	NA	NA	119274012	119294576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119274217_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
26734	chr4	+	2660	8	NIC	ENSMUSG00000028884.15	novel	1813	9	NA	NA	2	-266	intron_retention	FALSE	canonical	3	1317	junction_6	97.6963224925659	52	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAAATGTTGGTTTTA	NA	False	NA	NA	False	NA	NA	NA	132495647	132505797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132502445_132503558_132503667_132503963_132504059_132505100
26735	chr5	+	2604	5	NNC	ENSMUSG00000029581.15	novel	2157	6	NA	NA	13	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1201.66579692525	10	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCGTGTGTGTCTCAGG	NA	False	NA	NA	False	NA	NA	NA	142946110	142958938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142947003_142955682_142955817_142955921_142956044_142956272_142956441_142957650
26736	chr3	+	2867	5	NNC	ENSMUSG00000046519.16	novel	2836	5	NA	NA	2	0	intron_retention	FALSE	non_canonical	0	0	junction_4	27.078589328102	260	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTCTCTGTACAT	NA	False	NA	NA	False	NA	NA	NA	95496281	95526553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517166_95524354
26737	chr15	-	1121	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	495	0	-495	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCCAGTTTGTAGACTGG	158	False	NA	NA	False	NA	NA	NA	98832319	98829800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
26738	chr12	-	2225	12	FSM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	120	-157	-8	157	multi-exon	FALSE	canonical	3	359	junction_6	45.6703965821071	1199	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGATAAGTGACAGTCTG	NA	False	NA	NA	False	NA	NA	NA	40495781	40364887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
26739	chrX	+	2173	10	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-21	-60	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	254.259175635928	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCAAGCTCTAGTATAT	6242	False	NA	NA	False	NA	NA	NA	73348897	73355404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
26740	chr10	-	3311	1	ISM	ENSMUSG00000062866.17	ENSMUST00000105545.12	8556	13	263383	2	113260	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	33	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTTAGTCCATTACTGT	NA	False	NA	NA	False	NA	NA	NA	13086773	13083462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_13083500_13086800
26741	chr16	+	4119	13	FSM	ENSMUSG00000022833.8	ENSMUST00000023532.7	4107	13	-55	43	-55	-43	multi-exon	FALSE	canonical	3	110	junction_6	18.9487613198213	126	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTATTCATTAACATTT	NA	False	NA	NA	False	NA	NA	NA	34510930	34545521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893_34530036_34535707_34535779_34541808_34542028_34542106_34542240_34543379
26742	chr9	+	2555	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-18	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	274.037862347523	1	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTGCTGTGTCTTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	77824697	77891797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864479_77868141_77868336_77883066_77883145_77884029_77884202_77887106_77887236_77888755_77888891_77889946_77890403_77890573
26743	chr3	-	3642	16	NNC	ENSMUSG00000028126.17	novel	3480	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	17.3699612997714	198	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGTTCTAGCAATCATT	1349	False	NA	NA	False	NA	NA	NA	95014090	94965879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979357_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990140_95004476_95004630_95013686
26744	chr1	-	2258	12	ISM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	11512	214	11502	0	3prime_fragment	FALSE	canonical	3	944	junction_9	79.5281539627777	2	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177612565	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461
26745	chr16	-	3643	37	Antisense	novelGene_ENSMUSG00000033653.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	5	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCGCGGAGGCCAGCCC	5389	False	NA	NA	False	NA	NA	NA	21364359	21241936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_21241974_21253434_21253811_21254498_21254570_21261081_21261213_21262836_21262933_21266004_21266038_21267098_21267153_21274977_21275102_21276126_21276214_21278488_21278559_21279871_21280024_21280125_21280187_21282340_21282450_21285160_21285245_21288866_21289037_21293996_21294071_21295221_21295258_21296233_21296326_21296593_21296640_21297141_21297240_21314634_21314677_21318937_21319159_21323145_21323236_21325517_21325569_21330265_21330310_21336030_21336104_21336860_21336982_21340632_21340703_21345123_21345247_21346285_21346340_21350026_21350113_21351032_21351116_21351810_21351910_21358766_21358853_21362011_21362063_21363918_21364024_21364116
26746	chr2	+	2282	14	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	2	-438	intron_retention	FALSE	canonical	0	0	junction_7	280.286898663013	1	49	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	164675736	164681501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164675771_164675949_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678797_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
26747	chr7	+	4449	3	FSM	ENSMUSG00000053198.15	ENSMUST00000065487.7	4497	3	33	15	33	-8	multi-exon	FALSE	canonical	3	33	junction_2	5	63	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTCAAAAGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	27207263	27219451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27207529_27214675_27214873_27215464
26748	chr6	+	1902	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1966.74369199446	2	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTCTTATCTTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	122684552	122691591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684729_122684810_122684893_122688496_122688572_122689599_122689675_122690097
26750	chr5	-	2075	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	28	0	28	0	multi-exon	FALSE	canonical	3	527	junction_10	41.6678895284064	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	22755345	22691486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
26751	chrX	+	1780	17	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	387.663146099484	2072	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	NA	False	NA	NA	NA	154045500	154080644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_154045671_154046363_154046402_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
26753	chr9	+	674	7	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	13	-4980	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	181.382116599797	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCGCAGAGTTGCATCAGC	9227	False	NA	NA	False	NA	NA	NA	63509954	63542630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63539359_63539429_63542586
26754	chr2	-	3314	7	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	75	-2	combination_of_known_junctions	TRUE	canonical	3	18	junction_3	32.273139846559	118	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGGTCTGGTATGGAT	1240	False	NA	NA	False	NA	NA	NA	35335770	35290192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35335707
26755	chr5	+	3034	16	NNC	ENSMUSG00000028954.12	novel	3269	15	NA	NA	-4	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	189.23476307369	971	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGGGGAACGCACTTGA	NA	False	NA	NA	False	NA	NA	NA	24890980	24915355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986_24914459_24914513
26756	chr12	-	443	2	FSM	ENSMUSG00000097429.2	ENSMUST00000180719.2	1423	2	-61	1041	-61	-1041	multi-exon	FALSE	canonical	3	6	junction_1	0	1	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCAGTCAGAGCAGGGGAA	NA	False	NA	NA	False	NA	NA	NA	3407214	3394856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_3394948_3406862
26758	chr7	+	1762	9	FSM	ENSMUSG00000073838.11	ENSMUST00000106392.10	1754	9	-12	4	5	0	multi-exon	FALSE	canonical	3	611	junction_6	24.9646625252576	2977	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	126086537	126089899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126089084_126089492
26759	chr17	+	2279	17	NNC	ENSMUSG00000038141.12	novel	4499	17	NA	NA	33	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	289.604444674111	43	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	NA	False	NA	NA	False	NA	NA	NA	6307167	6356064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355305
26760	chr18	-	1728	9	Antisense	novelGene_ENSMUSG00000025428.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCACGATGGCGCCTGTCC	NA	False	NA	NA	False	NA	NA	NA	77870563	77866269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77866334_77866429_77866598_77866777_77866931_77867527_77867677_77867776_77868002_77868682_77868790_77868908_77869057_77869498_77869648_77869998
26761	chr6	-	1694	13	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_2	2535.94224626447	1046	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAATTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51446825	51438109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51439036_51440196_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
26762	chr10	+	1432	8	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	22	-14	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	1961.27581342516	117	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATGGTCTTTATTTTTC	NA	False	NA	NA	False	NA	NA	NA	126899424	126903152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901172_126901821_126901873_126901969_126902106_126902797
26763	chr5	+	848	1	Intergenic	novelGene_837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGACAACGTGTGAGACGA	NA	False	NA	NA	False	NA	NA	NA	115605436	115606284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_115605400_115606300
26766	chr17	-	2105	6	NNC	ENSMUSG00000024150.13	novel	2017	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	148.781181605739	55	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	NA	False	NA	NA	NA	87573323	87562085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_87563486_87564574_87564735_87565355_87565518_87569779_87569877_87571568_87571794_87573262
26767	chr8	-	1120	2	NIC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	57	1879	intron_retention	FALSE	canonical	3	2808	junction_1	0	4	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGAAGGTCAATGGTAAG	NA	False	NA	NA	False	NA	NA	NA	108315033	108312351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_108313349_108314910
26768	chr10	+	3267	12	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	408	0	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	33.5120553120764	47	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	NA	NA	NA	103204111	103255236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_103204182_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
26769	chr15	-	1352	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1369	159	1242	-159	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	4	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCATTCCTTGAGCCCC	1400	False	NA	NA	False	NA	NA	NA	98831077	98829464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
26770	chr17	+	1786	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	5	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1406.78256582174	2007	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313450	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313761_37314177_37314208_37315688_37315796_37316941_37317087_37320310
26771	chr14	+	2866	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	37.1563848991732	98	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	55797965	55807521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55798276_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
26772	chr11	+	1625	7	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2181.92290321073	4	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGCACTCGGGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	95557844	95571591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566066_95566454_95566513_95568876_95568973_95570519
26773	chr3	-	2543	5	NIC	ENSMUSG00000038975.15	novel	1992	8	NA	NA	5	-8	intron_retention	FALSE	canonical	3	638	junction_2	150.786894324407	7	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATCAGTGGCTGTTGT	7081	False	NA	NA	False	NA	NA	NA	153617665	153612937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613842_153614426_153615236_153615700_153615799_153615897_153616526_153617561
26774	chr6	-	2062	11	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	10	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.578359442822	6	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACTTAGCCTCACAGTT	NA	False	NA	NA	False	NA	NA	NA	95695771	95451131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95451993_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
26775	chr11	+	3602	18	FSM	ENSMUSG00000020454.18	ENSMUST00000020734.11	3565	18	-32	-5	-32	0	multi-exon	FALSE	canonical	3	10	junction_1	69.1571601699214	339	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCTGGTACTGTGTTTA	3541	False	NA	NA	False	NA	NA	NA	3152359	3194586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3152557_3153629_3153751_3163259_3163334_3165591_3165720_3170243_3170531_3171092_3171295_3174631_3174808_3177394_3177531_3177705_3177886_3179868_3180102_3184461_3184646_3185580_3185661_3186213_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
26776	chr5	+	2635	10	NNC	ENSMUSG00000050017.12	novel	2632	11	NA	NA	-5	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	432.941361182115	1	92	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAATTCCACCTGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	111478623	111536217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486299_111494390_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
26778	chr3	+	1515	11	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	768.525477781967	3	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3856	False	NA	NA	False	NA	NA	NA	88204474	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219119_88227766_88228013_88228320_88228453_88228750
26780	chr8	+	2349	5	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-18	4465	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	273.490744815981	27	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGCTCTGCCTGCTCTT	7170	False	NA	NA	False	NA	NA	NA	20143829	20183132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20143957_20157802_20158009_20163109_20163405_20173024_20173033_20181419
26781	chr4	+	1355	3	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-9	386	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTAGTTCAGTTTT	19	False	NA	NA	False	NA	NA	NA	12232823	12234337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12233111_12233204_12233644_12233708
26782	chr6	-	3411	3	ISM	ENSMUSG00000014748.14	ENSMUST00000125614.8	2265	4	651	-1241	619	-290	3prime_fragment	FALSE	canonical	3	553	junction_1	55.5	1	98	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACACAGAGACCATGGCT	NA	False	NA	NA	False	NA	NA	NA	83752121	83746156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83749292_83750691_83750846_83751999
26783	chr12	-	2867	14	FSM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	-23	-916	-23	916	multi-exon	FALSE	canonical	3	824	junction_2	126.191832929968	1646	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTGCTTCAGAAATGTGAA	NA	False	NA	NA	False	NA	NA	NA	54842511	54792217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
26784	chr18	-	2732	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	25	-225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2481.701857471	1	129	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTCCTTTGTGAAT	224	False	NA	NA	False	NA	NA	NA	35087385	35070691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071719_35071974_35072079_35072412_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079550_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
26786	chr4	+	615	1	Intergenic	novelGene_1912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	103421819	103422434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_103421800_103422400
26787	chr3	-	2394	8	NNC	ENSMUSG00000068921.15	novel	831	8	NA	NA	1	1449	intron_retention	FALSE	non_canonical	0	0	junction_4	402.995467640488	1	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATGACTGGGTGAGT	NA	False	NA	NA	False	NA	NA	NA	88857720	88834331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840855_88840974_88843455_88843561_88850081_88850139_88857442
26788	chrX	+	2322	4	NNC	ENSMUSG00000045427.14	novel	2364	4	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	371.760675704142	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGGAAAAATCTTGCATA	NA	False	NA	NA	False	NA	NA	NA	133501966	133507798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133502083_133503440_133503512_133505603_133506721_133506780
26789	chr19	-	2611	9	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-2	-8	intron_retention	FALSE	non_canonical	0	0	junction_6	483.759609077691	10	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAACCATAGCTTGTCTG	6557	False	NA	NA	False	NA	NA	NA	4062675	4057510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059822_4061273_4061345_4061429_4062550
26790	chr14	-	1572	10	Antisense	novelGene_ENSMUSG00000022009.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCGGAGTCCCGGGCGCGG	NA	False	NA	NA	False	NA	NA	NA	76372525	76348441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76348772_76349367_76349436_76351612_76351714_76352417_76352481_76353223_76353301_76361925_76362018_76363576_76363769_76368249_76368367_76370406_76370638_76372224
26791	chrX	-	3156	14	NNC	ENSMUSG00000067369.13	novel	3128	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	16.3591351169659	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATCTCTAGTCCATG	NA	False	NA	NA	False	NA	NA	NA	133177668	133123843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167089_133168079_133168311_133171258_133171335_133177594
26792	chr15	+	4162	4	NIC	ENSMUSG00000022359.11	novel	798	5	NA	NA	-9	-4	intron_retention	FALSE	canonical	3	54	junction_2	8.33999733546454	17	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTTGCTTTTGAAGAA	2651	False	NA	NA	False	NA	NA	NA	58004763	58022046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_58004978_58011729_58011830_58014001_58017101_58021297
26793	chr6	-	2402	8	NIC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	0	3	intron_retention	FALSE	canonical	3	123	junction_7	139.301024799547	182	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTCTCTTTATTTGATA	4590	False	NA	NA	False	NA	NA	NA	49240967	49220854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49230043_49240771
26794	chr14	-	3358	8	NNC	ENSMUSG00000035726.9	novel	548	2	NA	NA	618	10867	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCTTCCTCTTCCTCCTC	NA	False	NA	NA	False	NA	NA	NA	52399969	52387003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52387084_52387339_52387545_52387810_52387950_52389658_52389776_52393609_52393801_52395824_52395911_52396830_52396962_52397560
26796	chr7	+	2623	4	ISM	ENSMUSG00000001918.18	ENSMUST00000127401.8	2807	8	7324	31	2321	-31	3prime_fragment	FALSE	canonical	3	1461	junction_1	156.552440628266	21	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCATGGCCCTAGAGTC	NA	False	NA	NA	False	NA	NA	NA	16522616	16532168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_16523863_16527571_16527806_16529682_16530084_16531426
26798	chr3	-	2214	2	ISM	ENSMUSG00000052544.10	ENSMUST00000199707.2	416	3	19055	-1877	19055	1877	3prime_fragment	FALSE	canonical	3	111	junction_1	0	116	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGCAATGTTAAAATTTC	NA	False	NA	NA	False	NA	NA	NA	152912365	152909125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_152911229_152912254
26799	chr16	-	5267	23	NIC	ENSMUSG00000014039.19	novel	5623	23	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_18	10.7258280999535	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTATTTTTTAAAGA	6485	False	NA	NA	False	NA	NA	NA	97653048	97593531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_97595857_97596849_97597060_97598896_97598978_97600253_97600430_97600753_97600838_97604909_97605042_97607244_97607365_97607674_97607755_97608208_97608373_97608921_97609057_97609854_97609987_97612256_97612352_97613757_97613926_97617305_97617394_97617735_97617831_97618063_97618246_97619411_97619542_97622967_97623211_97636777_97637031_97638773_97638928_97640454_97640549_97641122_97641169_97652968
26800	chr3	-	1836	2	Genic_Genomic	ENSMUSG00000069083.5	novel	1590	1	NA	NA	-133	260	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGATTTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	25266902	25264919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_25266575_25266721
26803	chr5	-	1877	14	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	777.589668339088	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTTGCTTGTTAATAA	2267	False	NA	NA	False	NA	NA	NA	138170133	138162865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165372_138166195_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167365_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
26804	chr4	+	912	1	Intergenic	novelGene_1948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAACTCAAAACCAGCGC	1308	False	NA	NA	False	NA	NA	NA	125951302	125952214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_125951300_125952200
26805	chr9	+	2520	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	192.749189362757	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824640	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77890374_77890637
26808	chr2	-	1450	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-90	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	437.466443157517	360	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	152186042	152179341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180169_152181861_152181928_152184956_152185248_152185776
26809	chr18	+	1594	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-105	-134	-105	134	mono-exon	FALSE	NA	NA	NA	NA	NA	6	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAAGCTTTAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	82356481	82358075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
26810	chr8	+	3166	5	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-2	-197	intron_retention	FALSE	canonical	0	0	junction_2	32.2751839653936	250	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGCCCAGGGTTGTCCAG	NA	False	NA	NA	False	NA	NA	NA	22550734	22559698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22550787_22551901_22552137_22552379_22552525_22555015_22555948_22557896
26811	chr3	+	4364	14	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	0	-4769	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	112.14382143654	1	94	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTATCACCACTTTCCT	NA	False	NA	NA	False	NA	NA	NA	88682522	88728125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88682582_88684290_88684822_88695643_88695746_88696664_88696713_88706909_88707026_88715213_88715413_88715862_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725069_88726976_88727094_88727354
26812	chr2	+	3994	6	ISM	ENSMUSG00000036617.18	ENSMUST00000114604.9	4786	18	-181	63527	-181	1542	5prime_fragment	FALSE	canonical	3	184	junction_4	5.56417109729742	7	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCAGCCAAGCAAACAAACA	4615	False	NA	NA	False	NA	NA	NA	20524420	20751169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269
26813	chr6	+	1806	11	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	0	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1871.00645642927	2	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5115	False	NA	NA	False	NA	NA	NA	85429000	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438168_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
26815	chr2	+	3711	9	NNC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	38.2914399703119	136	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCATTCCTAGTATTAA	NA	False	NA	NA	False	NA	NA	NA	173918110	173941564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_173918166_173918916_173918988_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
26816	chr13	+	1953	1	ISM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	10310	3212	10254	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	20	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCCATTTCCCACCCTTA	NA	False	NA	NA	False	NA	NA	NA	74508737	74510690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_74508700_74510700
26818	chr4	-	3583	15	NIC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	0	-6	intron_retention	FALSE	canonical	3	684	junction_4	51.7986683305307	13	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGATTTTGCTTGATGG	NA	False	NA	NA	False	NA	NA	NA	155845550	155825103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155825810_155830485_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
26819	chr16	+	2027	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1105.58373721758	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTTTTGTTTGGGTCTT	1391	False	NA	NA	False	NA	NA	NA	20354265	20362805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359840_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
26820	chrX	-	1553	4	NIC	ENSMUSG00000031168.15	novel	1743	5	NA	NA	25	341	intron_retention	FALSE	canonical	3	780	junction_2	7.25718035235908	112	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAGGTTTGACTTTAAT	NA	False	NA	NA	False	NA	NA	NA	8059112	8051226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8052073_8052882_8053159_8056317_8056676_8059039
26821	chr2	+	2832	7	FSM	ENSMUSG00000028640.12	ENSMUST00000030391.9	2838	7	-3	9	-3	6	multi-exon	FALSE	canonical	3	551	junction_1	51.676611946046	286	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGAAAGTCTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	172391509	172400533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
26822	chr2	-	2204	13	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	35	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.893208722969	1	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAACTCCCCTTTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	165740901	165669110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669258_165669315_165669648_165669859_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
26824	chr14	+	2931	17	NIC	ENSMUSG00000060012.10	novel	8865	40	NA	NA	-30568	140	combination_of_known_junctions	FALSE	canonical	3	41	junction_16	13.7925478066962	2	62	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACAGCAGCAGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	64994883	65041529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_64995034_64995999_64996158_64998117_64998251_65002451_65002599_65003159_65003190_65004802_65004903_65005061_65005189_65005868_65005925_65007990_65008113_65010359_65010537_65013685_65013779_65016762_65016916_65017139_65017218_65019790_65019845_65025856_65025969_65027013_65027148_65040422
26825	chr10	-	1631	9	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	750.24262742129	32	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725646	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698272_93704770_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
26826	chr2	+	6703	21	NNC	ENSMUSG00000035168.17	novel	3392	2	NA	NA	-3628	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	36.7370385306165	185	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGGTTGGCATTCATTG	7846	False	NA	NA	False	NA	NA	NA	59606426	59676059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_59606661_59615667_59615932_59621119_59621222_59621942_59622225_59623439_59623592_59626138_59626371_59627929_59628097_59629914_59630523_59636619_59636729_59637910_59638034_59645661_59645899_59647828_59648015_59650550_59650630_59663479_59663614_59664924_59665049_59665735_59665912_59667429_59667563_59669318_59669411_59671282_59671430_59672353_59672455_59673038
26827	chr19	-	4369	9	ISM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	17096	-79	11279	79	3prime_fragment	TRUE	canonical	3	113	junction_5	14.5166929773967	176	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAACTGGTCTTCCTTGG	9072	False	NA	NA	False	NA	NA	NA	12756394	12744304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_12747914_12748366_12748467_12752183_12752299_12753358_12753438_12753775_12753827_12754223_12754359_12755305_12755411_12755987_12756025_12756256
26828	chr9	+	2657	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	-7	0	combination_of_known_junctions	TRUE	canonical	3	66	junction_1	83.1088001619555	415	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	NA	False	NA	NA	NA	99125487	99182457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
26830	chr2	+	3321	4	NIC	ENSMUSG00000027397.15	novel	3219	10	NA	NA	-399	-3	intron_retention	FALSE	canonical	3	499	junction_3	21.6999743983464	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTCTCTTGTGCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	129048880	129053533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_129049797_129049900_129050460_129050960_129051877_129052603
26831	chr9	+	1903	14	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	135	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_8	343.212098240575	2853	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	59446957	59472392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469183_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
26832	chr5	+	659	2	FSM	ENSMUSG00000118332.2	ENSMUST00000118121.2	919	2	250	10	235	-10	multi-exon	TRUE	canonical	3	93	junction_1	0	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGATTCCATTCCCGGTGT	NA	False	NA	NA	False	NA	NA	NA	143534750	143537683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143534890_143537163
26833	chr11	+	3000	11	NNC	ENSMUSG00000057522.16	novel	3063	10	NA	NA	0	-3	intron_retention	FALSE	canonical	0	0	junction_10	82.0241427873526	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGGTCCTGTCATTGAT	NA	False	NA	NA	False	NA	NA	NA	95304923	95384229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522_95382718_95382777
26834	chr17	+	2728	11	NIC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	0	-4	intron_retention	FALSE	canonical	3	220	junction_5	32.4168166234749	12	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATTTCTTTTATTTTGT	9223	False	NA	NA	False	NA	NA	NA	57071756	57076836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
26835	chr3	+	3378	2	NNC	ENSMUSG00000027787.15	novel	848	8	NA	NA	-6512	3523	intron_retention	FALSE	canonical	0	0	junction_1	0	2	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATAAACAGTATTTTTG	NA	False	NA	NA	False	NA	NA	NA	69647252	69650893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69647764_69648026
26837	chr15	-	2248	2	NNC	ENSMUSG00000047878.14	novel	2092	3	NA	NA	21117	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	7956	False	NA	NA	False	NA	NA	NA	83114813	83110922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83113072_83114714
26838	chr2	-	2260	15	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	6243	457	-1229	79	3prime_fragment	FALSE	canonical	3	627	junction_5	67.5038925559414	1	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGATGCCTGCCCCAGAA	1382	False	NA	NA	False	NA	NA	NA	5011359	4995991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154
26839	chr8	+	6036	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	752	69	-141	-69	multi-exon	FALSE	canonical	3	162	junction_1	24.5	403	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGAGGAGGGACGGCTAG	NA	False	NA	NA	False	NA	NA	NA	14938862	14951651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_14939119_14944571_14945231_14946530
26840	chr9	+	2657	6	NNC	ENSMUSG00000057982.9	novel	1425	6	NA	NA	7	761	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	56.3418139573088	10	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGGCCCCAAACAGAAATT	804	False	NA	NA	False	NA	NA	NA	22137073	22152152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22151460_22151502
26841	chr18	+	3163	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-5	-17	intron_retention	FALSE	non_canonical	0	0	junction_12	250.773221612049	1	142	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGATATTAAAAAGAAATCA	9045	False	NA	NA	False	NA	NA	NA	32970358	32999436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985031_32985149_32985537_32985704_32985916_32986026_32987832_32987910_32992272_32992381_32994079_32994160_32994535_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
26842	chr14	+	1120	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	37	605	-15	-10	multi-exon	FALSE	canonical	3	2255	junction_1	40	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTCCTTATACAAAACC	6576	False	NA	NA	False	NA	NA	NA	76741954	76744600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
26843	chr9	+	4474	13	Intergenic	novelGene_1105	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	161	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTCCATTGAGACATGG	NA	False	NA	NA	False	NA	NA	NA	70332725	70383913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_70334389_70336829_70336940_70338214_70338308_70339217_70339310_70348034_70348167_70349556_70349679_70350682_70351033_70357567_70357820_70360781_70361100_70365105_70365301_70366271_70366434_70376634_70376763_70383056
26844	chr17	+	2356	5	NIC	ENSMUSG00000002660.9	novel	983	6	NA	NA	-25	0	intron_retention	FALSE	canonical	3	1307	junction_3	101.465511381947	17	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	NA	False	NA	NA	NA	57297366	57303188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57297514_57297605_57297678_57298293_57300014_57300447_57300554_57302877
26846	chr5	+	1957	8	ISM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	5194	4	4765	0	3prime_fragment	FALSE	canonical	3	3017	junction_3	223.417244871837	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	5521	False	NA	NA	False	NA	NA	NA	77104388	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
26847	chr9	+	2708	15	FSM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	-10	8	-10	-8	multi-exon	TRUE	canonical	3	256	junction_7	39.1366001255571	483	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTAAGTTGGTTTGGCA	NA	False	NA	NA	False	NA	NA	NA	107828144	107849461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
26848	chr18	+	1336	9	ISM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	272	1775	9	-5	5prime_fragment	FALSE	canonical	3	5078	junction_4	234.50316495732	608	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTCCTCTCTTTGACA	NA	False	NA	NA	False	NA	NA	NA	77861700	77868794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684
26849	chr1	+	1771	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	-189	4	-189	-4	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTCTGGCTGTTTCTAG	9852	False	NA	NA	False	NA	NA	NA	172327424	172334943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
26850	chr11	-	784	1	Intergenic	novelGene_2465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAAATGTAGCAGTG	NA	False	NA	NA	False	NA	NA	NA	95987298	95986514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_95986500_95987300
26851	chr13	+	3547	12	ISM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	9615	195	9515	-195	3prime_fragment	FALSE	canonical	3	118	junction_8	18.5984092450478	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATGCTTTTAGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	51815347	51837885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
26852	chr8	+	2765	2	FSM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	-5	2932	-5	-2932	multi-exon	FALSE	canonical	3	69	junction_1	0	188	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCCCCGTGACACAACC	NA	False	NA	NA	False	NA	NA	NA	105318077	105322726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105318228_105320111
26853	chr18	+	3386	2	FSM	ENSMUSG00000046668.10	ENSMUST00000235169.2	857	2	-4	-2525	-4	0	multi-exon	FALSE	canonical	3	58	junction_1	0	136	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	35963362	35994741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35963453_35991445
26855	chr13	-	3345	9	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	66	-3	intron_retention	FALSE	canonical	3	47	junction_8	47.5939859646153	10	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGCCTTAAGAATTCAT	NA	False	NA	NA	False	NA	NA	NA	35178039	35161735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35174353_35174700_35174800_35177050_35177214_35177812
26856	chr2	+	2019	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1043.77866893428	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	130116331	130121233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116614_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118955_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
26857	chr2	+	2490	13	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	5.73488351136175	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGTGTCGGTGCTGTGCTG	2721	False	NA	NA	False	NA	NA	NA	30023781	30042022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711_30040651_30041728
26858	chr4	+	4257	21	NNC	ENSMUSG00000028830.15	novel	4073	24	NA	NA	-4	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	17.2257800984455	73	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGCTATTTAATTGTG	NA	False	NA	NA	False	NA	NA	NA	126647341	126748109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126647456_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741666_126742603_126742696_126746958
26859	chr8	+	3573	16	NNC	ENSMUSG00000025809.16	novel	3815	16	NA	NA	40	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	147.398778828049	300	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGATTTGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	129412277	129459674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_129412349_129431893_129431961_129433554_129433641_129436733_129436957_129439688_129439860_129440407_129440647_129442602_129442759_129443687_129443784_129444065_129444156_129446472_129446614_129446755_129446956_129448864_129449104_129449290_129449514_129450676_129450910_129452500_129452668_129458503
26860	chr8	-	2485	6	NNC	ENSMUSG00000031601.17	novel	2461	6	NA	NA	18	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	252.623356006526	2	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTGTGACTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	40964327	40945581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947157_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964130
26861	chr4	-	2429	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	-5	281	-5	-281	multi-exon	FALSE	canonical	3	663	junction_8	52.1791784782653	2	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGGGTCTCTGGCTACAC	NA	False	NA	NA	False	NA	NA	NA	120427478	120397345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
26862	chr11	+	2654	15	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	-1	164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	109.858745111853	7	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAATGGTAAATATT	NA	False	NA	NA	False	NA	NA	NA	29476448	29495443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476488_29476692_29476844_29477719_29477802_29479928_29480155_29480580_29480693_29483225_29483398_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490856_29491340_29491482_29492344_29492510_29494269_29494411_29494912
26863	chr1	+	3679	10	NIC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	5	-5	intron_retention	FALSE	canonical	3	624	junction_3	44.6121834657333	7	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCATTCGCCCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	42890397	42944837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42937769_42938600_42938710_42942454_42942625_42944564
26865	chr1	+	3991	2	NIC	ENSMUSG00000008475.14	novel	748	3	NA	NA	369	-20	intron_retention	FALSE	canonical	3	1297	junction_1	0	4	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTTTTCTTAATTGAA	NA	False	NA	NA	False	NA	NA	NA	152644618	152651328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_152647292_152650010
26867	chr7	+	1928	6	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-5	6416	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	102.34725203932	49	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCATGAATAAACCGAAAAT	9993	False	NA	NA	False	NA	NA	NA	42863457	42882682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135_42876337_42882321
26868	chr15	-	1487	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5258.74321698847	7	50	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	158	False	NA	NA	False	NA	NA	NA	98832319	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830327_98830580_98830722_98830853_98831077_98832213
26869	chr11	+	826	8	FSM	ENSMUSG00000020903.14	ENSMUST00000021285.14	4394	8	296	3272	-1	106	multi-exon	FALSE	canonical	3	260	junction_1	20.1626043021455	1475	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTCTTGGTGTACCTTG	NA	False	NA	NA	False	NA	NA	NA	67857314	68094702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67902140_67902266_67911731_67911825_68000102_68000205_68094531
26870	chr19	+	1520	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	24	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2978.23859618441	13	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	867	False	NA	NA	False	NA	NA	NA	8944428	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947336_8949877_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
26872	chr12	-	2701	13	NIC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-31	-24	intron_retention	FALSE	canonical	3	814	junction_12	100.406534758562	2	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAACGTGTAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	87519075	87496703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
26873	chr10	-	1509	1	Intergenic	novelGene_3466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGAACAAGGAACAGACAC	NA	False	NA	NA	False	NA	NA	NA	70677037	70675528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_70675500_70677000
26874	chr3	+	1432	1	Intergenic	novelGene_3084	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACATAACAGTTAGGCTG	NA	False	NA	NA	False	NA	NA	NA	15124252	15125684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_15124300_15125700
26875	chr13	-	3310	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	16	315	16	-315	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	187	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACGTAGTTGAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	74210402	74184933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
26876	chr10	-	1226	2	ISM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	177	2312	177	728	5prime_fragment	FALSE	canonical	3	770	junction_1	0	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAGATACTCAAGACAAAAA	NA	False	NA	NA	False	NA	NA	NA	5755423	5751471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_5752533_5755258
26877	chr18	+	1719	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	39	0	39	0	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGTCTCTTGAACTTC	NA	False	NA	NA	False	NA	NA	NA	67523825	67535819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
26878	chr9	+	2375	24	FSM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	416	9	29	3	multi-exon	FALSE	canonical	3	468	junction_2	39.8133167299073	1	83	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGCGTCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	108385320	108393131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
26879	chr9	+	2764	14	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	34	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	405.053433541389	1	114	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5546	False	NA	NA	False	NA	NA	NA	35122484	35128306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125229_35125482_35125574_35125870_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127614
26880	chr3	-	1720	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-3	32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	815.399288692356	68	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGAACCTTGTCTCTGCT	NA	False	NA	NA	False	NA	NA	NA	108352475	108333895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334642_108335521_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
26882	chr3	-	2009	10	ISM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	62	2969	-5	-1539	5prime_fragment	FALSE	canonical	3	876	junction_1	58.4427545171816	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTTAATTTACTTAGTT	NA	False	NA	NA	False	NA	NA	NA	116456264	116427781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
26884	chr14	-	3557	10	FSM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	32	-1	0	1	multi-exon	FALSE	canonical	3	23	junction_9	8.56348838577675	310	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGGCTTACAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	76024445	75997555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435_76014567_76024364
26885	chr17	-	3057	13	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	2	24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	289.706880120043	1	112	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGAATAGTGGTAGAGT	NA	False	NA	NA	False	NA	NA	NA	29226825	29189960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194925_29198163_29198272_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
26886	chr1	-	4009	15	FSM	ENSMUSG00000089872.11	ENSMUST00000061611.15	3995	15	-15	1	-15	-1	multi-exon	FALSE	canonical	3	29	junction_3	6.52154983457904	84	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTTCCTCATTTAAT	NA	False	NA	NA	False	NA	NA	NA	190643982	190505076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
26887	chr1	-	2182	13	NIC	ENSMUSG00000001674.12	novel	2258	13	NA	NA	25	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	214.133136155991	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAATGTTTTTTATACC	NA	False	NA	NA	False	NA	NA	NA	121495426	121481570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495296
26888	chr19	-	814	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	17	-13	-5	-13	multi-exon	FALSE	canonical	3	161	junction_4	40.2833712591188	1082	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTCTTCATCATGGCAT	5091	False	NA	38	True	NA	NA	NA	8751814	8749902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
26889	chr9	-	2729	12	FSM	ENSMUSG00000090626.10	ENSMUST00000184125.8	2794	12	142	-77	2	77	multi-exon	FALSE	canonical	3	143	junction_11	31.4406169897191	372	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAAGAGCAATGGCTAGG	7878	False	NA	NA	False	NA	NA	NA	72399241	72366924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
26890	chr12	-	2219	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	5	8	0	-8	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	154	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTCAATTCTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	87519039	87496687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
26891	chr1	+	2210	2	Antisense	novelGene_ENSMUSG00000026235.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCAAAAACCGGCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	77343825	77346175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77345857_77345996
26892	chr6	-	3843	16	NNC	ENSMUSG00000000441.18	novel	3070	17	NA	NA	168	-37	intron_retention	FALSE	canonical	0	0	junction_6	198.117204368189	2	97	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTTATGTTATTTTAAT	8312	False	NA	NA	False	NA	NA	NA	115653428	115595594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115600015_115600424_115600510_115603259_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
26893	chr10	-	2478	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-13	-2	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTAAGTTTGTAGTTTAA	5244	False	NA	NA	False	NA	NA	NA	62322538	62291052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
26894	chr9	-	2322	17	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-7	-133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	131.268748660906	3	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTGTTGGTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	114469259	114415166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439796_114446953_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
26895	chr8	+	2167	16	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	323.883902382045	1	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	107621219	107649720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107621384_107624691_107624884_107625073_107625159_107627483_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
26897	chr2	+	3618	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	50	0	50	0	multi-exon	FALSE	canonical	3	422	junction_10	74.3091181573454	1	165	14	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	118428741	118472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
26898	chr5	-	3012	5	NIC	ENSMUSG00000001082.13	novel	1485	12	NA	NA	-6	1	intron_retention	FALSE	canonical	3	315	junction_4	54.3139024560011	8	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCCGTCTTACTATTC	NA	False	NA	NA	False	NA	NA	NA	34794490	34790988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34792504_34792713_34792876_34792952_34793851_34793937
26901	chr1	+	3691	25	Antisense	novelGene_ENSMUSG00000100620.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	87	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCCGGGACCCGCCACCG	NA	False	NA	NA	False	NA	NA	NA	135312670	135358195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_135313222_135313670_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330114_135331028_135331137_135331964_135332061_135333558_135333710_135334253_135334314_135334496_135334603_135334695_135334809_135335724_135335817_135337136_135337213_135346970_135347176_135347721_135347818_135348031_135348092_135354668_135354775_135358005
26902	chr10	-	2251	7	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-15	0	intron_retention	FALSE	non_canonical	0	0	junction_6	536.747535314944	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8232	False	NA	NA	False	NA	NA	NA	128540915	128533812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128535080_128535340_128535534_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540596
26903	chr10	-	2104	7	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-28	0	intron_retention	FALSE	canonical	0	0	junction_6	454.641403257068	2	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8219	False	NA	NA	False	NA	NA	NA	128540928	128533812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540767
26905	chr13	-	3210	27	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	-4	36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	202.328592807481	1	101	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTACATAGCGTCTTT	7258	False	NA	NA	False	NA	NA	NA	113063910	113004352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113004477_113005540_113005650_113009432_113009594_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056956_113058163_113058302_113063763
26906	chr4	+	4598	12	FSM	ENSMUSG00000032998.17	ENSMUST00000106310.9	4660	12	62	0	-29	0	multi-exon	FALSE	canonical	3	63	junction_5	23.2197550545519	139	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCAGCCTGATGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	119396946	119486316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
26907	chr10	-	3915	21	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-13712	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	138.316042092015	1	149	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTTTGCTGATTGG	NA	False	NA	NA	False	NA	NA	NA	61191818	61155438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61155704_61155778_61156821_61156868_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186851_61188711_61188815_61191592
26908	chr9	-	1355	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	177	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGACTTGTCACTTGTA	NA	False	NA	NA	False	NA	NA	NA	64085788	64080657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080715_64082104_64082357_64082859_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
26909	chr15	-	2664	10	NIC	ENSMUSG00000022329.16	novel	2914	11	NA	NA	-29	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	88.1704298013684	7	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTTGGCGTTGTTGTTA	NA	False	NA	NA	False	NA	NA	NA	35155844	34875645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
26910	chr13	+	3949	10	NNC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	7	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	45.1649924522287	8	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAGCTGATCTACAAAGT	NA	False	NA	NA	False	NA	NA	NA	49574731	49618027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49595428_49595488_49596897_49596971_49599778_49599944_49615009
26912	chr7	+	2471	4	NNC	ENSMUSG00000050973.12	novel	4189	2	NA	NA	25	-2269	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	7	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTAAATATAAAAATAGTTT	NA	False	NA	NA	False	NA	NA	NA	79882637	79889540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79882954_79885667_79885735_79887151_79887661_79887961
26913	chr2	+	1880	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	67	-717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1168.84989472083	2	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCTTTATACTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	121244430	121268451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257073_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
26914	chr9	-	1586	11	NIC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-2	2	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	2169.84053791978	7	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996695	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
26915	chr3	+	1812	6	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	80	-1	intron_retention	FALSE	canonical	0	0	junction_5	1954.72623147079	4	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATGAACCACAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	121220273	121251847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121250683
26916	chr7	+	2985	14	FSM	ENSMUSG00000062031.14	ENSMUST00000079403.11	2981	14	-15	11	0	-3	multi-exon	FALSE	canonical	3	42	junction_1	11.3032434995212	90	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGAAGTCAGAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	140521478	140527566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
26917	chr15	-	1305	9	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	35	1922	-29	723	5prime_fragment	FALSE	canonical	3	5476	junction_4	304.187031281743	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAACCGTGTTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	31601915	31592867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
26918	chr11	-	1863	10	ISM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	2204	10	1150	-10	3prime_fragment	FALSE	canonical	3	2002	junction_5	396.290578013435	3	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTCTGACTTGCTGTTT	8979	False	NA	NA	False	NA	NA	NA	106888163	106879464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063
26919	chr1	-	2579	17	NNC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-13	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	98.7818777661166	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTTATTGAGTATTTAG	NA	False	NA	NA	False	NA	NA	NA	160898241	160869082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160869396_160871218_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
26920	chr1	-	1528	3	NNC	ENSMUSG00000038633.6	novel	2048	3	NA	NA	34	-196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	589.5	1530	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCTTAGTGGAATTTC	NA	False	NA	NA	False	NA	NA	NA	182110335	182103532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_182104348_182106719_182107284_182110186
26921	chr17	+	1983	12	Antisense	novelGene_ENSMUSG00000059208.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTATAAAAAAAAGTCAAAAA	NA	False	NA	NA	False	NA	NA	NA	33865209	33888052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_33865633_33867785_33867839_33868568_33869370_33871244_33871301_33877361_33877439_33877842_33877888_33879185_33879289_33882198_33882259_33883557_33883612_33884465_33884637_33885613_33885659_33887957
26923	chr19	-	2306	19	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	364.485160327228	2	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGCTTTGTCTGCCTCT	5100	False	NA	NA	False	NA	NA	NA	53027031	52979612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52998486_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
26924	chr10	-	2545	9	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	442.283209606695	2	109	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5249	False	NA	NA	False	NA	NA	NA	62322533	62291050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292635_62294702_62294843_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
26925	chr9	+	3290	23	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	113	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGGTTAAAAAGAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61824558	61852701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824961_61826180_61826253_61826893_61826976_61827156_61827239_61828299_61828529_61831186_61831503_61831915_61832093_61832250_61832422_61832810_61832970_61833643_61833803_61834319_61834446_61834629_61834750_61834835_61834916_61836933_61837047_61839081_61839204_61839355_61839472_61840514_61840552_61842654_61842832_61843943_61844053_61844361_61844499_61844709_61844809_61851476_61851608_61852627
26926	chr18	+	2459	9	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	0	-1	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_8	231.151330301169	10	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTATGTGGCCTGCAT	NA	False	NA	NA	False	NA	NA	NA	52598764	52625002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52621913_52623089_52623128_52623515_52624796_52624860
26928	chr11	-	1174	1	Intergenic	novelGene_2235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAAGTTTTGCTGGTGCAT	NA	False	NA	NA	False	NA	NA	NA	21512588	21511414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_21511400_21512600
26929	chr17	+	2581	7	ISM	ENSMUSG00000002307.17	ENSMUST00000170075.9	2673	8	673	-5	-3	-3	3prime_fragment	FALSE	canonical	3	546	junction_4	69.9700332682182	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTTTCCTTTACTTTG	6398	False	NA	NA	False	NA	NA	NA	34129247	34134561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
26930	chr14	-	2387	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1828.41076826297	1	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTATTGCTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	36857252	36842778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847230_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
26931	chr4	-	2078	10	NNC	ENSMUSG00000032897.18	novel	2006	10	NA	NA	475	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_9	131.604720542752	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	NA	False	NA	NA	NA	120682406	120614634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682083
26933	chr16	-	4355	27	NNC	ENSMUSG00000039637.16	novel	4296	28	NA	NA	-3877	492	intron_retention	FALSE	canonical	3	7	junction_26	22.8794111729586	98	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTCTTGTGCTGCTCCA	8075	False	NA	NA	False	NA	NA	NA	4501518	4444748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452295_4452452_4452546_4452625_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415_4497856_4501339
26934	chr4	-	3078	14	NIC	ENSMUSG00000028453.11	novel	2974	14	NA	NA	-22	-17	intron_retention	FALSE	canonical	3	29	junction_13	27.9494471793833	83	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTGAATTGCTTATTT	-10	True	NA	NA	False	NA	NA	NA	43010528	43002359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43009280_43009706_43009801_43010001_43010173_43010255
26935	chr3	-	2416	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	-5	-4	-5	4	multi-exon	TRUE	canonical	3	409	junction_7	23.7667234354495	988	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCCTTCTCTTTATCCAG	NA	False	NA	NA	False	NA	NA	NA	105708657	105634578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
26936	chr18	+	1811	13	NIC	ENSMUSG00000034484.9	novel	2067	15	NA	NA	-11	-36	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	351.452106741919	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAATATTAGTAATAAAT	NA	False	NA	NA	False	NA	NA	NA	53309376	53353901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_53309560_53322726_53322845_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
26937	chr2	+	2488	1	FSM	ENSMUSG00000026843.16	ENSMUST00000132534.4	2342	1	-149	3	-149	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	92	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTCTTAGTCTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	31505041	31507529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31505000_31507500
26938	chr2	-	1534	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-6	-1011	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6397.65622611125	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCGATCTGTCCTTCAG	3730	False	NA	NA	False	NA	NA	NA	154734757	154714348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718635_154719590_154719740_154720389_154720485_154726230_154726367_154729627_154729728_154730031_154730281_154734609
26940	chr8	-	1862	5	NNC	ENSMUSG00000031821.12	novel	3900	5	NA	NA	-27	273	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	485.566936683296	5	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTACACTTAGAACGGG	NA	False	NA	NA	False	NA	NA	NA	121315800	121308009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_121308551_121308820_121308948_121312831_121313192_121314880_121315579_121315664
26941	chr2	+	2287	9	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	38	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	412.081738706048	2	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8607	False	NA	NA	False	NA	NA	NA	72306540	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309340_72312099_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
26944	chr9	+	1203	7	NIC	ENSMUSG00000032295.16	novel	1378	10	NA	NA	-36	0	intron_retention	FALSE	canonical	2	212	junction_5	32.4794807019242	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATAATGGTGCCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	57047525	57049491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048997_57049089_57049200_57049278
26945	chr8	-	2727	17	NNC	ENSMUSG00000019470.13	novel	4409	18	NA	NA	3	-6	intron_retention	FALSE	non_canonical	0	0	junction_10	151.66985888353	1	57	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTACATCCCGGTCTTG	1028	False	NA	NA	False	NA	NA	NA	3671299	3660095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661835_3662962_3663077_3663158_3663500_3663589_3663710_3663798_3663889_3664265_3664390_3665993_3666159_3666249_3666385_3668059_3668253_3668542_3668667_3668944_3669094_3671227
26946	chr18	+	3188	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148989.3	1002	2	46	-2232	-18	4	multi-exon	FALSE	canonical	3	36	junction_1	0	242	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAAATTGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	50112539	50226300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_50112694_50223266
26947	chr10	+	2163	12	NNC	ENSMUSG00000005682.10	novel	4759	25	NA	NA	9817	-3060	intron_retention	FALSE	canonical	3	9	junction_3	89.6277886364925	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCAAGTTTGTGGGTCATG	NA	False	NA	NA	False	NA	NA	NA	128149083	128154156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128149613_128149710_128149911_128150051_128150428_128150594_128150694_128150791_128150863_128150966_128151106_128151355_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031
26948	chr4	-	1259	7	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	393.876743269882	4193	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2495	False	NA	NA	False	NA	NA	NA	129229160	129203309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129215867_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
26949	SIRV7	-	2480	5	NNC	SIRV7A	novel	2498	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1334.65969445398	1	112	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	147918	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147626
26950	chr6	-	3590	3	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	35	-201	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	383.5	1	159	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGTTGCAAGAACAAATGG	4272	False	NA	NA	False	NA	NA	NA	35516699	35486041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35489253_35498834_35498947_35516432
26953	chr11	+	3621	3	FSM	ENSMUSG00000020346.17	ENSMUST00000156607.8	633	3	-653	-2335	11	-1	multi-exon	TRUE	canonical	3	30	junction_1	30.5	142	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAAGTGTGTGTGTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	49135404	49153853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_49136445_49142376_49142502_49151397
26955	chr9	+	3372	10	FSM	ENSMUSG00000032216.16	ENSMUST00000184450.8	3329	10	-44	1	0	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	906.918361033807	32	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCATTTGTGCCGTTAGT	NA	False	NA	NA	False	NA	NA	NA	72569719	72628071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499
26957	chr8	+	2144	17	NIC	ENSMUSG00000001909.17	novel	2138	17	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_3	163.562249235574	1064	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85415903	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85415979_85416260_85416538_85417145_85417202_85417401_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
26958	chr4	+	2226	12	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	7067	373	-288	-373	3prime_fragment	FALSE	canonical	3	1466	junction_8	110.084640614273	1	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGCACGGAGTCTCG	6563	False	NA	NA	False	NA	NA	NA	129090619	129113027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
26959	chr14	-	2571	5	NNC	ENSMUSG00000002320.16	novel	2382	5	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_2	139.257854356586	301	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCCTGTCGTTGGAAGT	5169	False	NA	NA	False	NA	NA	NA	55880834	55873425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55874070_55875315_55875651_55877841_55878028_55878423_55879046_55880050
26960	chr10	-	2982	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	84	33	11	-13	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	118	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAGAATTGTGAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	117546579	117524812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
26961	chr15	+	2278	13	NIC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	-8	-2978	intron_retention	FALSE	canonical	3	1706	junction_7	101.149607293136	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAAACGCTCAGCGGT	NA	False	NA	NA	False	NA	NA	NA	84076433	84098490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
26963	chr19	+	952	6	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	2833	331	1658	-331	3prime_fragment	FALSE	canonical	3	8905	junction_3	360.182953511129	107	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGGGGTCATTAAAGAA	3676	False	NA	NA	False	NA	NA	NA	8947237	8955512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
26964	chr13	-	4030	8	NIC	ENSMUSG00000021417.16	novel	1426	10	NA	NA	10	-2	intron_retention	FALSE	canonical	3	26	junction_7	56.277011654994	4	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGCCTTAAGAATTCATG	NA	False	NA	NA	False	NA	NA	NA	35178095	35161734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35174353_35174700_35174800_35177050_35177312_35177996
26965	chr2	-	2990	6	NIC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	3	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	30.9476978142155	314	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGCTTGGTCTCGTGAG	8330	False	NA	NA	False	NA	NA	NA	158203459	158195624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202446_158202520_158202862_158202991_158203324
26967	chr16	-	2203	7	NIC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	4	-2	intron_retention	FALSE	canonical	3	270	junction_1	79.2199820471802	378	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATGTGCGCATGTGCAC	NA	False	NA	NA	False	NA	NA	NA	5073801	5062017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_5063250_5065316_5065464_5066428_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
26968	chr10	+	2086	12	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	-13	-5	intron_retention	FALSE	canonical	3	604	junction_8	36.3502247995141	609	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCAGAACCAGAGTTTCA	9184	False	NA	NA	False	NA	NA	NA	127102223	127117814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127114092_127114185_127114278_127117269
26970	chr4	+	2992	12	NNC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	80.6747372052769	2	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTTGAGGTCATGATGT	8296	False	NA	NA	False	NA	NA	NA	156194479	156211721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194631_156198345_156198459_156200879_156201103_156201172_156201306_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
26971	chr5	+	3193	18	NNC	ENSMUSG00000036435.14	novel	3272	18	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_8	52.47579768389	4	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGATATTTGATAATATTC	NA	False	NA	NA	False	NA	NA	NA	76677204	76718129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697372_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
26972	chr1	-	2269	5	NNC	ENSMUSG00000026577.14	novel	921	5	NA	NA	72	1236	intron_retention	FALSE	canonical	0	0	junction_4	70.1676563667335	2	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCGCTATCCAGGATCTC	NA	False	NA	NA	False	NA	NA	NA	164134968	164125874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_164127314_164129852_164130290_164131416_164131494_164134007_164134086_164134730
26973	chr16	-	3216	2	ISM	ENSMUSG00000005846.13	ENSMUST00000230002.2	715	5	5492	-1515	-2765	-13	3prime_fragment	FALSE	canonical	3	2208	junction_1	0	3	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGTGTAAAGTCGCTG	6525	False	NA	NA	False	NA	NA	NA	11015624	11010846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_11012576_11014137
26974	chr17	+	2460	5	NIC	ENSMUSG00000002660.9	novel	983	6	NA	NA	-42	0	intron_retention	FALSE	canonical	3	1307	junction_3	101.465511381947	17	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	NA	False	NA	NA	NA	57297262	57303188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57297514_57297605_57297678_57298293_57300014_57300447_57300554_57302877
26975	chr3	+	2571	14	NIC	ENSMUSG00000027998.12	novel	1851	15	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	670	junction_6	49.9839027342241	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCACCTGTGTTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	82962835	82979594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82978044_82978496_82978691_82979417
26976	chr13	+	3448	11	ISM	ENSMUSG00000038518.16	ENSMUST00000173246.8	5997	18	174966	5	65454	-2	3prime_fragment	FALSE	canonical	3	689	junction_7	67.4611740188384	2	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTCTGTCTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	45059712	45075114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
26977	chr1	-	1840	10	NNC	ENSMUSG00000003051.14	novel	2095	9	NA	NA	-19	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.095521256575	49	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTAACCTTGGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	135186195	135181324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135181628_135181759_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
26978	chr1	-	4615	10	NIC	ENSMUSG00000026193.16	novel	7797	44	NA	NA	-7	4777	intron_retention	FALSE	canonical	3	1514	junction_2	85.8422325483726	10	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTTAAGATAATCAGTT	NA	False	NA	NA	False	NA	NA	NA	71692366	71677206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
26979	chr13	+	2170	1	Intergenic	novelGene_1397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTTAAAGAGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	62387111	62389281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62387100_62389300
26980	chr3	+	2249	10	NIC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	15	-4	intron_retention	FALSE	canonical	3	18	junction_3	814.194277176924	4	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTGAATCTCATTTTA	NA	False	NA	NA	False	NA	NA	NA	79498686	79510579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_79498865_79500916_79501058_79502508_79503506_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
26981	chr9	+	1767	3	NNC	ENSMUSG00000032478.15	novel	930	6	NA	NA	7504	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	305	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTCCTGTGCAAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	109669862	109672039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109670764_109670809_109671156_109671519
26983	chr17	-	1399	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	180	1070	82	614	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCCTAAGGCAGAGAGCC	NA	False	NA	NA	False	NA	NA	NA	36149018	36145882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
26984	chr11	-	3304	28	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	370.999365892255	1	139	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTTGGTTTGCTGC	8480	False	NA	NA	False	NA	NA	NA	102771779	102729302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756485_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
26985	chr9	+	2466	17	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	2	-4	combination_of_known_splicesites	FALSE	canonical	3	26	junction_2	75.3706466404528	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACGTAAGTGTCCCTAGT	NA	False	NA	NA	False	NA	NA	NA	99125507	99182453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99125544_99128319_99128420_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
26986	chr5	-	2541	8	NNC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	0	19653	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	649.653502622273	701	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATACCACGAATGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30278612	30243546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30245047_30265943_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
26987	chrX	-	3374	21	Antisense	novelGene_ENSMUSG00000031060.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	118	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGAGCGCGCTCTGGCCGG	NA	False	NA	NA	False	NA	NA	NA	20517097	20484019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20484289_20486210_20486353_20501968_20502152_20505669_20505737_20507415_20507494_20508980_20509068_20510908_20510970_20511101_20511281_20511675_20512104_20512195_20512279_20513553_20513742_20513846_20513990_20514094_20514212_20514318_20514413_20514501_20514662_20515385_20515532_20515626_20515692_20515768_20515958_20516037_20516107_20516389_20516714_20516795
26988	chr2	+	2366	8	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-3	intron_retention	FALSE	canonical	3	48	junction_4	831.237533280767	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATAGTATGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130118574_130118951_130119053_130119395_130119891_130120075_130120211_130120816
26990	chr16	-	1655	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	435	3	435	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAATAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	45975005	45973350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975000
26992	chr3	+	1983	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-8	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	346.683999566688	1	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTAAAAAAAGTTGCTGG	4841	False	NA	NA	False	NA	NA	NA	34074238	34123464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108439_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
26993	chr15	+	2722	3	NIC	ENSMUSG00000022385.12	novel	2692	11	NA	NA	13192	0	intron_retention	FALSE	canonical	3	640	junction_1	43.5	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	85757338	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_85759420_85759736_85759953_85760349
26994	chr15	-	1318	3	NNC	ENSMUSG00000072235.7	novel	1803	4	NA	NA	169	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2504	233	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAAAGTTGTCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	98851415	98847724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98848896_98849068_98849148_98851347
26996	chr11	+	1759	7	Antisense	novelGene_ENSMUSG00000098955.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	73	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGACGGAGGAGCGGCAAGA	6	True	NA	NA	False	NA	NA	NA	120236514	120239267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120236954_120237047_120237362_120237464_120237644_120237733_120238178_120238464_120238701_120238793_120238924_120239250
26997	chr8	+	2713	15	NNC	ENSMUSG00000047866.21	novel	2859	15	NA	NA	27	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	67.1211211017753	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTCTCCAGTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	87350698	87443264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440654_87440722_87442877
26999	chr2	-	3347	7	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	791	-2	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	32.4846117415616	18	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGGTCTGGTATGGAT	NA	False	NA	NA	False	NA	NA	NA	35352452	35290192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35352356
27000	chr3	+	2838	10	FSM	ENSMUSG00000038712.17	ENSMUST00000039537.14	2800	10	-40	2	-40	1	multi-exon	FALSE	canonical	3	18	junction_8	52.7870167352017	450	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCGTTCCTACCTTGG	NA	False	NA	NA	False	NA	NA	NA	95190214	95203475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202610_95202737_95202961
27002	chr1	-	3225	6	NNC	ENSMUSG00000013997.11	novel	2196	5	NA	NA	1192	8415	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	61	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGGCCCCGCCCCGTCCC	3249	False	NA	NA	False	NA	NA	NA	171170843	171157160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171157259_171158818_171158852_171165817_171166206_171166387_171166496_171167757_171167907_171168394
27003	chr14	+	2613	11	NIC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_3	96.6821596779882	72	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	99283879	99311976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_99284117_99284736_99284905_99287428_99287536_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
27004	chr11	+	2588	8	NNC	ENSMUSG00000038366.16	novel	3540	7	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	229.040233521162	25	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTAGGCTTCTTCCTCTTT	4563	False	NA	NA	False	NA	NA	NA	97690497	97729589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897_97728314_97729157
27005	chr1	+	3014	14	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-151	-3	combination_of_known_junctions	FALSE	canonical	3	175	junction_1	74.1483400445414	1	93	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTTCTGGGAAGTTTAA	10004	False	NA	NA	False	NA	NA	NA	175708597	175736295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
27006	chr1	+	3094	1	NIC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	18426	-1924	mono-exon	FALSE	NA	NA	NA	NA	NA	5	83	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTAATTGCATTTTTAC	NA	False	NA	NA	False	NA	NA	NA	190813653	190816747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_190813700_190816700
27007	chr19	+	1426	2	Intergenic	novelGene_1262	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTACATACAGATGCCA	NA	False	NA	NA	False	NA	NA	NA	41513702	41515412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41513714_41513997
27009	chr12	-	2562	8	NIC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	-58	17	intron_retention	FALSE	canonical	3	904	junction_7	87.6938086847222	31	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTGTTTCTTTTTCTT	54	False	NA	NA	False	NA	NA	NA	78908327	78889758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
27010	chr11	-	1388	1	NIC	ENSMUSG00000020738.17	novel	911	4	NA	NA	11325	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTTCTCTTTATTCT	5168	False	NA	NA	False	NA	NA	NA	115415318	115413930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115413900_115415300
27011	chr14	-	3691	8	NNC	ENSMUSG00000021965.4	novel	2260	9	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_4	78.9039716027899	2	81	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATGTTGCCAACTCT	NA	False	NA	NA	False	NA	NA	NA	58063620	58044016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58044989_58045431_58045536_58047399_58049123_58054101_58054209_58057616_58058020_58059492_58059659_58060357_58060420_58063466
27012	chrX	-	1922	4	NNC	ENSMUSG00000046942.18	novel	1725	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	145.164274760241	29	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	78679188	78666836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_78668390_78671446_78671527_78673369_78673567_78679096
27013	chr6	-	1635	13	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3119.16980029231	907	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446822	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438962_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
27015	chr12	+	4336	15	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	7	849	intron_retention	FALSE	non_canonical	0	0	junction_4	120.935912358402	1	104	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTTCAAACTCCGTCTT	NA	False	NA	NA	False	NA	NA	NA	85157638	85182468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165184_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176562_85176640_85177233_85177318_85177670_85177839_85179392
27016	chr5	-	3106	7	FSM	ENSMUSG00000053581.14	ENSMUST00000079996.13	3169	7	58	5	26	0	multi-exon	FALSE	canonical	3	27	junction_6	14.7271480229163	197	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATTCTAGACAGTTT	8735	False	NA	NA	False	NA	NA	NA	139470246	139456970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470020
27017	chr10	-	2164	5	NIC	ENSMUSG00000004667.19	novel	900	6	NA	NA	15	1	intron_retention	FALSE	canonical	3	2552	junction_2	170.307075601691	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGGTGCAATCCTAGAG	5624	False	NA	NA	False	NA	NA	NA	79875520	79871783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79872136_79872360_79872433_79872597_79872808_79873021_79874448_79875416
27018	chr15	+	1942	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	0	0	0	0	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	44	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGGTCTCATTATTAT	NA	False	NA	NA	False	NA	NA	NA	78959378	78978605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
27019	chr16	+	2095	6	NNC	ENSMUSG00000022900.15	novel	2850	7	NA	NA	-6190	-420	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	145.901336525749	2	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTACTTCTATTCATTG	NA	False	NA	NA	False	NA	NA	NA	36529709	36546683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_36529991_36535862_36535983_36536468_36536616_36542244_36542846_36542900_36543042_36545878
27020	chr5	+	2873	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	23	22	23	-22	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	859	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATACAGTTTTATACAT	4317	False	NA	NA	False	NA	NA	NA	29940708	29991454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
27022	chr2	-	3549	15	NIC	ENSMUSG00000074643.13	novel	3441	16	NA	NA	0	-23	combination_of_known_junctions	FALSE	canonical	3	257	junction_14	29.7386575874238	4	104	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAATAAAATTAATATATCC	NA	False	NA	NA	False	NA	NA	NA	155953855	155913789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
27023	chr5	-	5787	20	NIC	ENSMUSG00000040351.12	novel	6426	20	NA	NA	98	-421	combination_of_known_junctions	TRUE	canonical	3	68	junction_14	13.2648286332828	37	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTTCCATTTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	3852689	3740420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_3743497_3743771_3743906_3744778_3744894_3750355_3750408_3751804_3751984_3752891_3753038_3754525_3754593_3754787_3754875_3756188_3756324_3763107_3763239_3772545_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3783975_3784185_3797020_3797139_3805593_3805777_3819428_3819730_3822516_3822788_3852596
27024	chr2	+	1835	9	NIC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-2005	974	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	1328.28601376925	7	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCCCGACTCTGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	162914659	162925593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_162914835_162916301_162916725_162917555_162917696_162917838_162917956_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
27025	chrX	+	1058	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	220	-68	220	68	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13069029	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13069000_13070100
27026	chr5	+	1322	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	132	12	-3	-12	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	533	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAATGAAAGAATTGAAGTA	9198	False	NA	NA	False	NA	NA	NA	30824252	30832162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
27027	chr10	+	1852	9	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	14	-20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1241.50442382418	157	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATTTTCACTCCTGAA	917	False	NA	NA	False	NA	NA	NA	127894893	127913121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127895023_127895079_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
27029	chr2	-	2499	4	NIC	ENSMUSG00000027566.16	novel	914	7	NA	NA	2	8	intron_retention	FALSE	canonical	3	3926	junction_1	771.868008290421	1	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAACCTGTCGTCATTTG	NA	False	NA	NA	False	NA	NA	NA	179684201	179678158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179678367_179678730_179678794_179679175_179681273_179684070
27030	chr11	+	2046	13	Genic_Genomic	ENSMUSG00000087338.3	novel	811	5	NA	NA	18094	19366	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCGCGGGGACTGGGCG	NA	False	NA	NA	False	NA	NA	NA	88814847	88846253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_88815549_88819988_88820153_88821031_88821172_88824273_88824392_88825419_88825498_88826648_88826778_88827839_88827878_88832109_88832182_88834621_88834698_88835200_88835363_88837974_88838063_88843233_88843380_88846119
27031	chr1	+	4148	20	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	7	-90	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	98.9547869559419	1	172	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCTCCTAATTTCTTTG	8340	False	NA	NA	False	NA	NA	NA	191307894	191354768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337050_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347819_191347946_191349923_191350023_191351716_191351894_191353276
27032	chr15	-	2836	11	NNC	ENSMUSG00000022329.16	novel	2914	11	NA	NA	-25	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	83.3220258995183	530	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTGTTGTTATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	35155921	34875637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155723
27033	chr9	+	2462	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	154.615835899092	1	93	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385254	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387561_108388337_108388410_108388529_108388620_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
27035	chrX	-	2607	6	NNC	ENSMUSG00000038344.15	novel	2525	6	NA	NA	88	128	intron_retention	FALSE	non_canonical	0	0	junction_1	85.726075379665	37	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTGTTGGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	161612362	161571784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_161572499_161572604_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
27036	chr11	-	2084	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	2	2	2	0	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	913	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGTTATCTGTTTTATA	NA	False	NA	NA	False	NA	NA	NA	44361323	44345399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
27037	chr9	-	3620	14	NNC	ENSMUSG00000032127.10	novel	3812	14	NA	NA	11	-207	intron_retention	FALSE	non_canonical	3	187	junction_5	20.5331309705953	1	120	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGCCTATAAATAAAAGTAT	6389	False	NA	NA	False	NA	NA	NA	44272956	44259431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265589_44265705_44265853_44266260_44266448_44266995_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
27038	chr5	+	2886	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	5	-1223	5	-263	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	1115	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATGTGTGTTATCTTA	6891	False	NA	NA	False	NA	NA	NA	65548844	65567773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
27039	chr7	+	3081	19	Antisense	novelGene_ENSMUSG00000030766.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGGAAAACATGAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	122878497	122930490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895792_122896719_122896810_122899711_122899828_122902920_122903000_122905597_122905677_122906187_122906301_122913674_122913719_122913866_122913935_122917608_122917722_122920810_122920884_122921097_122921213_122922834_122922909_122926461_122926567_122930448
27040	chr2	+	2952	17	Antisense	novelGene_ENSMUSG00000101645.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCTCCCTCCCTCTTG	NA	False	NA	NA	False	NA	NA	NA	84433032	84480913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_84433250_84433993_84434097_84435527_84435591_84438672_84438761_84439300_84439421_84439874_84440066_84440850_84441001_84441106_84441237_84442368_84442424_84443275_84443434_84444231_84444349_84445430_84445619_84446838_84447287_84450261_84450792_84451173_84451331_84452353_84452427_84480749
27041	chr1	-	1824	12	FSM	ENSMUSG00000013593.13	ENSMUST00000136976.7	1845	12	7	14	7	-14	multi-exon	FALSE	canonical	3	1142	junction_11	112.190068946623	1573	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCCTAAGCTCAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	171074684	171062435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
27042	chr5	-	3303	6	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	23	0	intron_retention	FALSE	canonical	3	1095	junction_1	142.186356588809	17	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	24650161	24646036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646822_24646921_24648142_24648274_24648455_24648892
27043	chrX	-	5337	9	FSM	ENSMUSG00000079509.11	ENSMUST00000088102.12	7002	9	286	1379	11	-1378	multi-exon	FALSE	canonical	3	51	junction_8	23.8298001460356	3	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTTCATCCCCCTAT	NA	False	NA	NA	False	NA	NA	NA	93166727	93119615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93157801_93157870_93166673
27046	chr5	-	2197	12	NIC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-6	-171	intron_retention	FALSE	canonical	3	610	junction_6	54.3615080154976	10	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGGTTTTTTAGTGT	8872	False	NA	NA	False	NA	NA	NA	110801252	110796454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110797046_110797197_110797281_110797398_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
27047	chr10	+	2435	15	Antisense	novelGene_ENSMUSG00000020076.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGGAAGCGGGGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	62451795	62486955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62452298_62455365_62455408_62457166_62457302_62460545_62460709_62460925_62460997_62461940_62462061_62463298_62463462_62469755_62469906_62475639_62475781_62476218_62476412_62476523_62476638_62478550_62478736_62479077_62479154_62482752_62482983_62486805
27048	chr17	+	1025	7	ISM	ENSMUSG00000019432.16	ENSMUST00000172549.2	1770	11	444	901	444	-901	internal_fragment	FALSE	canonical	3	2134	junction_3	68.6353083737194	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCATCGCCCTGGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	35462086	35471751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722
27049	chr16	+	3105	16	Antisense	novelGene_ENSMUSG00000033581.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCCCCACCCTCGCCCTCA	NA	False	NA	NA	False	NA	NA	NA	21878311	21981806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_21879635_21880606_21880722_21882329_21882463_21883841_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898356_21898815_21898951_21900482_21900736_21902673_21902738_21906277_21906332_21907813_21907863_21979997_21980055_21981533
27050	chr14	+	3078	6	Antisense	novelGene_ENSMUSG00000022034.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTCAAATTCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	66062793	66071370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070190_66071249
27052	chr7	-	2581	11	Fusion	ENSMUSG00000100068.2_ENSMUSG00000030491.17	novel	769	6	NA	NA	-22	687	multi-exon	FALSE	canonical	3	19	junction_1	140.882362274346	26	19	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACAAAGCCCACCCCAGC	NA	False	NA	NA	False	NA	NA	NA	35237140	35196192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_35197571_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
27053	chr17	+	1500	6	NNC	ENSMUSG00000046711.17	novel	1681	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2002.80826840714	28	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTCTGGTGTAAGGA	NA	False	NA	NA	False	NA	NA	NA	27775596	27782641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27781681_27781805
27054	chr7	-	2295	6	NIC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	25	321	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	291.615774607616	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCAATCTTCATGGAGC	NA	False	NA	NA	False	NA	NA	NA	118454882	118444295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118453407_118453511_118454845
27055	chr2	-	3290	23	ISM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	22619	0	-5479	0	3prime_fragment	FALSE	canonical	3	237	junction_15	46.7493757416225	171	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTTCTGTCTGATCTT	NA	False	NA	NA	False	NA	NA	NA	143830564	143789314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067
27056	chr10	-	2258	8	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-496	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	137.188831579703	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGCTTTGCTGATTGG	1799	False	NA	NA	False	NA	NA	NA	61178602	61155438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61156821_61156868_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572
27057	chr12	-	3985	8	NNC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	-9	-8	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	119.404132837919	2	99	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATGTGTGTGGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	87490618	87472946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87476041_87478169_87478280_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
27058	chrX	+	1657	5	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	910.842021154053	26	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357373	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139372817_139372920_139374527_139374688_139375917
27059	chr1	+	2202	7	NIC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	-12	-2	intron_retention	FALSE	canonical	3	337	junction_4	42.0452798249168	734	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATCATTGTCGTCGTG	8173	False	NA	NA	False	NA	NA	NA	134333720	134339472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230
27061	chr5	-	3837	17	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	-25	-2	combination_of_known_splicesites	FALSE	canonical	3	6	junction_16	25.5535589497823	90	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGTCTGTGGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	77053300	77023783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053117
27062	chr19	-	3106	1	FSM	ENSMUSG00002076852.1	ENSMUST00020181828.1	152	1	-970	-1984	-970	1984	mono-exon	FALSE	NA	NA	NA	NA	NA	1	72	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAATTGTCATGGCTGTT	7244	False	NA	NA	False	NA	NA	NA	5895435	5892329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5892300_5895400
27064	chr19	-	3401	13	NIC	ENSMUSG00000025200.8	novel	3581	14	NA	NA	50	-3	intron_retention	FALSE	canonical	3	11	junction_8	55.2682222338379	18	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAGAGCTTTTCCACCTG	NA	False	NA	NA	False	NA	NA	NA	44124231	44097857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44099100_44101387_44101486_44102112_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117664_44117852_44119850_44119953_44120524_44120588_44121438_44121524_44124204
27066	chr18	+	2171	10	NIC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	8	172	intron_retention	FALSE	canonical	3	450	junction_5	65.2092548154037	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGAAGCCAAAAGTGGAT	NA	False	NA	NA	False	NA	NA	NA	36877755	36886679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36877842_36878663_36878731_36880400_36881277_36881603_36881772_36881923_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479
27067	chr18	+	1183	7	ISM	ENSMUSG00000024474.8	ENSMUST00000007042.6	1996	20	9309	89	1610	-84	3prime_fragment	FALSE	non_canonical	0	0	junction_1	284.472855568955	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAGATCTGTGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	36887017	36890603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
27070	chr10	-	2412	4	ISM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	34290	614	34227	-614	3prime_fragment	FALSE	canonical	3	68	junction_2	8.73053390247253	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTGAAAAATCCCCATT	9074	False	NA	NA	False	NA	NA	NA	87948513	87927907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457
27074	chr18	-	2833	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	80	-2	8	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	1	107	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	14815805	14758685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
27075	chr11	-	1595	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5530.70380331473	1	35	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAATTACTTGGAAAC	NA	False	NA	NA	False	NA	NA	NA	69563141	69557786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559133_69559230_69559375_69559469_69559580_69559903_69559939_69560949_69561099_69561440_69561574_69561753_69561803_69563104
27076	chrX	+	3960	11	NNC	ENSMUSG00000004221.17	novel	727	4	NA	NA	-15025	-3954	intron_retention	FALSE	non_canonical	0	0	junction_1	0	40	79	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCGTGTGCTTTGACTG	NA	False	NA	NA	False	NA	NA	NA	73453114	73472520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73453904_73454002_73454096_73454188_73454266_73454362_73454598_73454862_73455049_73455168_73455268_73455576_73457687_73458512_73458629_73458724_73458759_73471656_73471789_73472431
27077	chrX	+	2033	9	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	4	1	combination_of_known_splicesites	FALSE	canonical	3	13	junction_2	223.785018209441	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	NA	False	NA	NA	NA	73340752	73348296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73340928_73341228_73341356_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
27078	chr12	-	3279	3	FSM	ENSMUSG00000090935.11	ENSMUST00000164431.2	3305	3	11	15	-8	-15	multi-exon	FALSE	canonical	3	34	junction_2	56.5	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACACTGTTTGCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	81579662	81545930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81548941_81551317_81551414_81579489
27079	chr17	-	3068	3	NNC	ENSMUSG00000083534.2	novel	1034	5	NA	NA	134	1841	intron_retention	FALSE	canonical	3	56	junction_1	45	9	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATGTTGGGTATTGATT	NA	False	NA	NA	False	NA	NA	NA	37282154	37278245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_37279529_37280098_37281462_37281732
27080	chr8	+	2631	15	NNC	ENSMUSG00000047866.21	novel	2859	15	NA	NA	-31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.9844370454705	2	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTAGAATTCTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	87350702	87443254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_87351007_87358167_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
27082	chr12	+	3333	4	ISM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	35697	-2544	1405	-16	3prime_fragment	FALSE	canonical	3	638	junction_1	32.4995726467629	1	151	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGGAAAGGTCTGCTGAG	NA	False	NA	NA	False	NA	NA	NA	86552587	86568383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_86552700_86553122_86553285_86561054_86561325_86565594
27083	chr7	-	4631	23	FSM	ENSMUSG00000014418.17	ENSMUST00000014562.14	4953	23	317	5	-7	-1	multi-exon	FALSE	canonical	3	17	junction_22	12.9471270625399	22	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACATGGATATGAGATT	NA	False	NA	NA	False	NA	NA	NA	46445134	46409894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440497_46444851
27084	chr17	-	3227	20	NNC	ENSMUSG00000024135.11	novel	3530	21	NA	NA	30	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	35.4294586099777	2	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGGTGTGCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	86452573	86292095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427427_86435228_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86451038_86451141_86452548
27085	chr10	-	2594	4	NNC	ENSMUSG00000112261.2	novel	660	3	NA	NA	24	2200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.6714276000077	26	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTAGAATCCAAACTGGA	1577	False	NA	NA	False	NA	NA	NA	95297062	95278977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95280066_95280307_95281620_95296475_95296588_95296980
27086	chr11	+	2064	9	NNC	ENSMUSG00000017421.19	novel	1562	12	NA	NA	-1341	186	intron_retention	FALSE	non_canonical	0	0	junction_5	447.163123898874	1	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATACTGTATGGCTTC	NA	False	NA	NA	False	NA	NA	NA	80278615	80286578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282232_80282670_80282819_80283909_80284003_80285145_80286088_80286215
27087	chr11	-	2669	11	FSM	ENSMUSG00000035086.14	ENSMUST00000122817.8	2662	11	-7	0	-7	0	multi-exon	FALSE	canonical	3	416	junction_7	42.6812605249658	51	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	NA	False	NA	NA	NA	101193093	101179087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
27088	chr19	-	3340	25	NNC	ENSMUSG00000024827.11	novel	3767	25	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	302.26165713666	330	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAATTTCCCATTTGATTTT	NA	False	NA	NA	False	NA	NA	NA	30152825	30075844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_30076511_30077236_30077318_30078142_30078316_30080378_30080475_30088072_30088185_30091121_30091264_30092587_30092701_30093798_30093949_30095942_30096069_30102121_30102198_30109071_30109215_30110879_30110922_30111094_30111180_30111589_30111688_30113903_30113985_30114492_30114633_30116674_30116781_30120759_30120857_30122546_30122744_30123017_30123166_30124568_30124647_30128821_30128987_30135913_30136050_30151823_30151865_30152777
27090	chr18	+	3401	16	ISM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	-8	17786	0	3241	5prime_fragment	FALSE	canonical	3	169	junction_7	105.765442791532	59	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCGTGTGTGTGTATGTG	5647	False	NA	NA	False	NA	NA	NA	31937142	32022664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122
27092	chr5	+	2329	15	NIC	ENSMUSG00000037313.17	novel	2899	16	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	3	12	junction_14	252.930175086698	56	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGGTCGCCAAGATATATC	NA	False	NA	NA	False	NA	NA	NA	33815935	33836328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33835963
27093	chr5	-	2600	14	NNC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	-15	-76	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.85655674939	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAATCAAAGCTGTTTTG	5516	False	NA	NA	False	NA	NA	NA	148336616	148264295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148264381_148268785_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
27095	chr7	+	1774	7	NIC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-6	0	intron_retention	FALSE	canonical	3	5787	junction_4	294.940672000319	42	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGCATGCTAATGGGAC	NA	False	NA	NA	False	NA	NA	NA	142606524	142621653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620500_142620883_142620971_142621048
27096	chr9	+	2248	11	NIC	ENSMUSG00000010048.11	novel	2056	12	NA	NA	-20	-4	intron_retention	FALSE	canonical	3	631	junction_10	37.3075059471951	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGTGGCCTTTATCCTG	NA	False	NA	NA	False	NA	NA	NA	107464904	107470233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468905_107469273_107469403_107469474_107469571_107469673
27097	chr11	+	3030	1	FSM	ENSMUSG00000046010.8	ENSMUST00000056677.8	1591	1	6	-1445	6	1445	mono-exon	FALSE	NA	NA	NA	NA	NA	579	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACAAAGTCTGAATTCT	NA	False	NA	NA	False	NA	NA	NA	82655176	82658206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_82655200_82658200
27098	chr19	-	1548	6	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1622.19389716519	2	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCATTGCCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	15902287	15882494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886666_15886794_15892227_15892398_15894440_15894468_15902222
27099	chr16	-	2675	23	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.827143729675	1	54	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGCCTTTAACTGTTC	NA	False	NA	NA	False	NA	NA	NA	13486000	13355825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483766_13483846_13485397_13485476_13485874
27101	chr2	+	1734	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	31	-712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1153.94591149961	10	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATACTGTCGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121244394	121268456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266870_121268225
27102	chr10	+	2271	11	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	53	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	292.312179014149	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTTGCATAAATTGTGT	NA	False	NA	NA	False	NA	NA	NA	21870662	21875788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871689_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
27103	chr1	-	3194	13	NIC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	6	-5	combination_of_known_junctions	FALSE	canonical	3	29	junction_12	39.2778563569857	202	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTTTGTTTTCACGTC	6061	False	NA	NA	False	NA	NA	NA	53336168	53228350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53335890
27104	chr1	-	2198	12	NIC	ENSMUSG00000013593.13	novel	1845	12	NA	NA	-317	-6	intron_retention	FALSE	canonical	3	18	junction_11	409.850325431368	5	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCAGCTTGTAATGTGTC	NA	False	NA	NA	False	NA	NA	NA	171079274	171062427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171078786
27105	chr8	+	2687	9	ISM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	319	-2	308	2	3prime_fragment	FALSE	canonical	3	858	junction_1	66.3059904910559	454	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAACCTGTCACCGTAAA	2905	False	NA	NA	False	NA	NA	NA	123295072	123299869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
27106	chr15	+	3223	9	Antisense	novelGene_ENSMUSG00000036606.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCGCGGCTGCCATGGAGA	NA	False	NA	NA	False	NA	NA	NA	89047480	89064927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89048316_89048414_89048738_89049449_89049600_89049901_89050033_89050108_89050208_89050566_89050695_89050783_89052233_89054772_89054821_89064867
27107	chr19	+	2434	10	NNC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	2321	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	127.558265553868	1	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTCTAGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	38045857	38062870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745_38061835_38061882
27108	chr11	+	2857	10	NNC	ENSMUSG00000017119.21	novel	3330	15	NA	NA	-907	-6	intron_retention	FALSE	canonical	1	1	junction_9	85.3278354710398	4	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAACCAAGCTGTTTATT	1915	False	NA	NA	False	NA	NA	NA	101462145	101472771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471144
27109	chr7	-	2204	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	62	16	1	-16	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	1049	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGCTTAACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	27252575	27231440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
27110	chr15	-	3163	5	NNC	ENSMUSG00000041935.11	novel	5076	6	NA	NA	-22	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	98.5022207871477	9	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTACTTGTTTCTTACTTT	2158	False	NA	NA	False	NA	NA	NA	4025248	4011521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_4014199_4019088_4019169_4021199_4021347_4021839_4021947_4025096
27111	chr7	+	1806	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	330	2356	0	1096	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	NA	False	NA	NA	NA	83541537	83548384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
27112	chr5	+	3402	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	26	422	intron_retention	FALSE	canonical	3	158	junction_2	17.2825779327044	13	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTAAGTGCCATTTGTGC	NA	False	NA	NA	False	NA	NA	NA	123366346	123387012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_123366508_123372656_123372760_123377604_123379997_123384256_123384346_123386355
27113	chr5	-	3985	6	NIC	ENSMUSG00000025747.13	novel	2723	7	NA	NA	-3	63	intron_retention	FALSE	canonical	3	1628	junction_1	107.651288891494	10	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGAGTGCTTTCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	30278618	30265998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30276706_30278358
27114	chr5	+	2797	13	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	40	550	intron_retention	FALSE	canonical	3	859	junction_7	67.3065128101781	7	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTAACTTTGTGGTAAG	NA	False	NA	NA	False	NA	NA	NA	31652177	31668753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31664909_31666642_31666751_31668175
27115	chr7	+	3026	22	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	5	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	141.589102415767	2	96	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAGAAAACACCTAGCTGT	985	False	NA	NA	False	NA	NA	NA	97130214	97190590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156929_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175863_97179502_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
27116	chr2	+	4070	1	Antisense	novelGene_ENSMUSG00000038914.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACAATGGCATAGAGCTC	NA	False	NA	NA	False	NA	NA	NA	180328660	180332730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_180328700_180332700
27117	chr19	+	2957	9	FSM	ENSMUSG00000024947.18	ENSMUST00000056391.15	2975	9	10	8	2	1	multi-exon	FALSE	canonical	3	360	junction_3	26.9153766460735	385	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAGAGAGATGTATG	624	False	NA	NA	False	NA	NA	NA	6385078	6390911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
27118	chr5	-	2943	6	NIC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	-2	1	intron_retention	FALSE	canonical	3	685	junction_1	59.1810780570952	1	90	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTACCGTAGCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	32942985	32893651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
27119	chr19	+	5019	10	ISM	ENSMUSG00000025060.16	ENSMUST00000026043.12	7278	18	40675	0	-317	0	3prime_fragment	FALSE	canonical	3	287	junction_7	29.5639085940615	144	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGGAATTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	47608791	47633685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_47609392_47610674_47610806_47611009_47611134_47613743_47613924_47623907_47624038_47624781_47624907_47625648_47625838_47626080_47626207_47627314_47627429_47630385
27120	chr10	+	1828	6	NNC	ENSMUSG00000060904.15	novel	2080	6	NA	NA	330	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	492.877915918334	1782	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	88567259	88579956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88567427_88569326_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
27122	chr17	-	2034	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	675.353065672771	2	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906483	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899259_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
27123	chr14	+	2675	2	Genic_Genomic	ENSMUSG00000114902.2	novel	864	1	NA	NA	-1748	152	multi-exon	FALSE	canonical	0	0	junction_1	0	2	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACCTGTTGCTTAGAAGT	NA	False	NA	NA	False	NA	NA	NA	61794498	61797262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_61794890_61794978
27124	SIRV2	-	1861	11	FSM	SIRV2A	SIRV201	2051	11	-1	191	-1	-156	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGTATGGTCGAACGTCC	NA	False	NA	NA	False	NA	NA	NA	5908	1191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
27125	chr6	+	2168	15	NNC	ENSMUSG00000001424.15	novel	718	5	NA	NA	-5307	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	187.166533398708	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCGTGGTGGAGCCAG	124	False	NA	NA	False	NA	NA	NA	28556508	28888824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28556571_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
27126	chr10	-	1930	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	2	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	810.223958064819	2	68	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTGATCTGTATAT	NA	False	NA	NA	False	NA	NA	NA	116899717	116886901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887173_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894024_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
27127	chr5	+	2314	14	Fusion	ENSMUSG00000089798.11_ENSMUSG00000033773.15	novel	3096	7	NA	NA	-8	18	multi-exon	TRUE	canonical	0	0	junction_2	55.9237646767571	10	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGACTGCCGAGCTC	NA	False	NA	NA	False	NA	NA	NA	107682614	107809722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_107682675_107686995_107687090_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
27128	chr18	+	2064	14	Intergenic	novelGene_4523	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	271	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCATTCAAACCTTCCACT	1385	False	NA	NA	False	NA	NA	NA	34866045	34884601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_34866446_34866628_34866744_34867773_34867909_34868426_34868521_34871266_34871329_34873377_34873482_34876989_34877120_34877926_34878023_34880276_34880363_34880658_34880696_34881966_34882012_34882567_34882665_34883790_34884021_34884168
27129	chr4	+	1751	8	NIC	ENSMUSG00000028792.15	novel	749	7	NA	NA	-49	-14	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	920.647265653411	1444	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAAATTTGTATCCCTG	2949	False	NA	NA	False	NA	NA	NA	128887096	128905308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_128887230_128892926_128893053_128895288_128895353_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
27130	chr3	+	3379	4	NIC	ENSMUSG00000027952.17	novel	1156	5	NA	NA	15	0	intron_retention	FALSE	canonical	3	568	junction_1	30.8688984074406	147	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGCTGGAGACTGAT	368	False	NA	NA	False	NA	NA	NA	89366652	89376316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89369253_89371602_89371756_89374853_89374984_89375820
27131	chr3	+	1889	15	FSM	ENSMUSG00000027998.12	ENSMUST00000150268.8	1851	15	-34	-4	-34	4	multi-exon	TRUE	canonical	3	670	junction_6	49.0312790627637	2291	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGTTGAGGATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	82962794	82979666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
27132	chr3	-	2516	18	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-73	2	combination_of_known_junctions	FALSE	canonical	1	47	junction_13	145.096698456975	3	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662268	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658149_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
27133	chr9	+	4305	25	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-18	-12	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_22	165.48979806589	1	239	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTATAGGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	44291807	44303648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300878_44300925_44302132_44302184_44302285
27134	chr11	-	1935	7	NNC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	134	0	intron_retention	FALSE	non_canonical	0	0	junction_2	5165.45921374749	210	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69561575	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558949_69559102_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440
27135	chr10	-	3073	11	NIC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	2	-6	intron_retention	FALSE	canonical	3	688	junction_10	110.572555365244	19	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGCTCTGCCTCTCTGCT	4774	False	NA	NA	False	NA	NA	NA	80896010	80879916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80886918_80887056_80887164_80887949_80888086_80895961
27136	chr4	+	4772	15	NIC	ENSMUSG00000028522.17	novel	4703	14	NA	NA	-14	-7	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	47.5884246772816	230	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAAACATACTTGTGTG	2870	False	NA	NA	False	NA	NA	NA	102971944	103022939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_102972021_102972756_102972858_102975435_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
27137	chr17	-	3030	15	Antisense	novelGene_ENSMUSG00000002372.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.257539376818856	3	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGCATCCCATAAGCCAGC	5529	False	NA	NA	False	NA	NA	NA	57018757	56980308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56980410_56993003_56993060_57003599_57003637_57003715_57003787_57008019_57008086_57008445_57008541_57009761_57009889_57012454_57012569_57013859_57013968_57014162_57014952_57015168_57015279_57016211_57016331_57017081_57017230_57017589_57017775_57017853
27138	chr6	-	2314	6	NIC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	41	-2	intron_retention	FALSE	canonical	3	5197	junction_3	511.420609674659	12	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCGGGCTGATTGCTGG	NA	False	NA	NA	False	NA	NA	NA	125471713	125437230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125438273_125439076_125439167_125439289_125439389_125440647_125441451_125449371_125449475_125471536
27139	chr4	-	1822	4	FSM	ENSMUSG00000003038.16	ENSMUST00000136859.2	927	4	-45	-850	2	-11	multi-exon	FALSE	canonical	3	1835	junction_2	320.62057880859	22	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTGGAATGCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	133695217	133692059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133693358_133693739_133694107_133694267_133694313_133695105
27140	chr8	+	1853	9	Antisense	novelGene_ENSMUSG00000031591.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTGGCTTGGATGAGAA	NA	False	NA	NA	False	NA	NA	NA	41793699	41801656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799230_41799336_41799388_41799966_41800111_41801122_41801169_41801466
27142	chr10	-	2234	6	NNC	ENSMUSG00000003923.15	novel	4167	7	NA	NA	236	1390	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	165.423819324788	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAGTCACTGAACTTGAC	NA	False	NA	NA	False	NA	NA	NA	71073874	71062885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070811_71072745_71072862_71073669
27143	chr4	-	3181	9	FSM	ENSMUSG00000012117.14	ENSMUST00000144668.8	3219	9	14	24	-5	5	multi-exon	FALSE	canonical	3	54	junction_8	7.46554586081956	289	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTTTGTGTGGTAACTG	NA	False	NA	NA	False	NA	NA	NA	133728187	133696362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
27145	chr15	-	3224	6	NNC	ENSMUSG00000053411.17	novel	3388	6	NA	NA	748	0	intron_retention	FALSE	canonical	3	30	junction_5	170.387088712731	99	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGACTTCTGTGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	79815969	79800010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79815662
27146	chr18	+	2189	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26596	-2862	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	196.592570787629	1	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTCTTGTTCAATCTAT	6489	False	NA	-33	True	NA	NA	NA	77126307	77237951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756
27147	chr17	-	2021	17	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	733.345416567118	1	33	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5840	False	NA	NA	False	NA	NA	NA	33904293	33865212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869014_33869258_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884616_33885467_33885504_33885620_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
27149	chr3	+	1979	14	NIC	ENSMUSG00000027671.15	novel	922	8	NA	NA	-167	2	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	382.691171239132	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCGTGCTGGATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32763145	32781119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_32763492_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
27150	chr2	-	3556	4	FSM	ENSMUSG00000009030.15	ENSMUST00000112940.8	3056	4	13	-513	13	-1	multi-exon	FALSE	canonical	2	7	junction_3	79.6366749682582	7	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCTGTATATTAGATATT	NA	False	NA	NA	False	NA	NA	NA	37249252	37240086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37248363
27151	chr16	+	3156	19	NIC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	-11	-24	intron_retention	FALSE	canonical	0	0	junction_3	75.5276296431059	5	81	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAAATTAAATCCCCTCC	NA	False	NA	NA	False	NA	NA	NA	20367414	20379544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20367496_20367715_20367864_20367984_20368065_20368753_20368852_20368951_20369075_20369170_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
27152	chrUn_JH584304v1	-	2649	6	Intergenic	novelGene_4634	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	318.41256256624	1	78	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCTAATAAAGTACTTCG	NA	False	NA	NA	False	NA	NA	NA	59735	52219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54868_55111_55702_56985_57136_58550_58836_59591
27155	chr5	-	4974	3	FSM	ENSMUSG00000061898.11	ENSMUST00000166382.5	3238	3	-1734	-2	-1734	1	multi-exon	FALSE	canonical	3	29	junction_1	4.5	26	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTTATGTGTTGTGTT	1529	False	NA	NA	False	NA	NA	NA	143164223	143157939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143160814_143161790_143161887_143162219
27157	chr6	+	1444	5	NNC	ENSMUSG00000067338.7	novel	1775	5	NA	NA	266	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	537.231095525938	7	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTTGCTTCCCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	145561748	145567203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145561816_145564021_145564182_145564457_145564607_145564908_145565590_145566816
27158	chr4	+	4167	22	FSM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	19	965	19	-965	multi-exon	FALSE	canonical	3	70	junction_14	10.5677814386534	58	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAAATTAGGGCATATTT	NA	False	NA	NA	False	NA	NA	NA	154059669	154092224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078140_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146
27160	chr6	+	3543	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115211.8	3295	12	26	-274	-1	-4	multi-exon	FALSE	canonical	3	109	junction_11	122.448774919714	77	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACAAAAAGTGCCCCTCTC	12	True	NA	NA	False	NA	NA	NA	30048026	30153453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
27161	chr19	-	614	6	NNC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1139.17303338869	3	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	NA	NA	NA	4092233	4090284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4090459_4090945_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
27162	chr13	-	2912	15	FSM	ENSMUSG00000021461.18	ENSMUST00000161977.8	3111	15	-16	215	5	0	multi-exon	TRUE	canonical	3	59	junction_14	18.8014599954148	206	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCAGACCTTCCTACTC	NA	False	NA	NA	False	NA	NA	NA	63579554	63459567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63579263
27163	chr9	-	3612	7	NIC	ENSMUSG00000032459.10	novel	1197	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	515	junction_4	22.0661883130428	27	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTAATTCGTTTTT	NA	False	NA	NA	False	NA	NA	NA	98483717	98470782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_98470980_98472087_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
27164	chr5	+	1795	6	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	-12	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	246.673873768585	67	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	NA	False	NA	NA	False	NA	NA	NA	143389580	143407659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555_143407299_143407347
27165	chr11	+	2186	9	NNC	ENSMUSG00000034285.16	novel	373	3	NA	NA	914	-27	intron_retention	FALSE	canonical	1	3	junction_1	426.743189752338	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGGAACCAAATTAAATAT	NA	False	NA	NA	False	NA	NA	NA	4824918	4844173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4825109_4833367_4833496_4833725_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
27166	chr8	+	2543	13	NIC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	7	-393	intron_retention	FALSE	canonical	3	384	junction_4	52.9171259822585	7	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCCAGCATTCCAGTTCC	2164	False	NA	NA	False	NA	NA	NA	70495469	70524604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70524302_70524455
27167	chr12	+	3045	2	ISM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	28303	-4	27837	4	3prime_fragment	FALSE	canonical	3	866	junction_1	0	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAGTGAAATGTTAAATT	NA	False	NA	NA	False	NA	NA	NA	32898636	32903352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_32898751_32900421
27168	chr11	+	2073	7	NIC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	5	-12	intron_retention	FALSE	canonical	3	581	junction_1	38.2262998470948	899	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTTTGAATACTGTGG	NA	False	NA	NA	False	NA	NA	NA	68936482	68942478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939471_68939556_68939706_68941127_68941303_68941725
27169	chr5	-	2455	4	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	3899.89481339632	7	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548741	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65547016_65547121_65548198_65548288_65548336_65548718
27171	chr19	-	1825	10	NIC	ENSMUSG00000010095.14	novel	2813	10	NA	NA	42	9	combination_of_known_junctions	FALSE	canonical	3	39	junction_9	969.740642429844	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTCATGAGATTGTGAC	NA	False	NA	NA	False	NA	NA	NA	8691418	8684941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8691324
27172	chr8	-	2678	8	NNC	ENSMUSG00000014837.16	novel	3492	7	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.4153382402471	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	NA	False	NA	NA	False	NA	NA	NA	106016122	106007040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106007707_106008146_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106016035
27175	chr11	-	1702	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	82	43	82	-43	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	2	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACACGTCATTGTGTAAAG	NA	False	NA	NA	False	NA	NA	NA	120238835	120236559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
27176	chr18	-	2322	17	Antisense	novelGene_ENSMUSG00000024474.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACGAAAACCTGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	36890673	36877744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_36877842_36878663_36878730_36880398_36880494_36881216_36881275_36881601_36882338_36882443_36882490_36884155_36884319_36885407_36885513_36886307_36886355_36886479_36886720_36887602_36887685_36888477_36888559_36888749_36888806_36889598_36889690_36889874_36889983_36890334_36890371_36890458
27177	chr5	+	2122	16	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	39	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	303.540837450252	2	31	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAAATAAATGAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	64250331	64285670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263280_64263945_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119_64285239_64285312_64285367_64285473
27178	chr15	-	1021	2	Antisense	novelGene_ENSMUSG00000042406.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	272	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTAGGCTTTCTTCAGC	NA	False	NA	NA	False	NA	NA	NA	80141730	80140597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80140722_80140833
27179	chr11	+	1922	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	3	186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1435.12510639523	1	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940641	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947130_22947573_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
27180	chr7	-	1786	3	Antisense	novelGene_ENSMUSG00000108878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGGTCCGAGGCACACA	NA	False	NA	NA	False	NA	NA	NA	83548384	83541557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83541682_83544735_83544969_83546955
27181	chr14	-	642	2	ISM	ENSMUSG00000021273.12	ENSMUST00000238526.2	3048	7	13699	1254	13699	-1251	3prime_fragment	FALSE	canonical	3	821	junction_1	0	27	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTCCTTGTCTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	63388675	63383852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63384418_63388598
27182	chr11	+	1975	2	Antisense	novelGene_ENSMUSG00000020719.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACTTGCTTTATGTTAT	NA	False	NA	NA	False	NA	NA	NA	106671187	106673373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673083_106673293
27183	chr9	+	2453	7	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	219.332066865645	1	62	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824704	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868225_77884107_77884202_77887106_77887232_77888755_77888891_77889946
27184	chr2	+	4907	23	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	3	102	junction_1	47.2740384433549	1	221	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTCTGTGCCCTGCCTTC	4721	False	NA	NA	False	NA	NA	NA	18069525	18217199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
27185	chr15	-	2182	17	NNC	ENSMUSG00000022466.7	novel	2271	17	NA	NA	19	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	78.9247069997729	7	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTATAAGGGTCGATATT	NA	False	NA	NA	False	NA	NA	NA	97603687	97572983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579657_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
27186	chr11	+	3371	33	NNC	ENSMUSG00000039230.15	novel	3906	39	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	71.8080938596061	11	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCCTCTGCCTATCTC	NA	False	NA	NA	False	NA	NA	NA	121342784	121507990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121431704_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469608_121473552_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
27187	chrX	-	2407	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3367	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	354.813485334196	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23227925	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085583_23086387_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
27188	chr10	+	2177	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	112	5	10	-5	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	1	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTGATTTCTTTGT	1403	False	NA	NA	False	NA	NA	NA	77417665	77434561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
27189	chr19	-	2149	3	NNC	ENSMUSG00000024742.16	novel	2373	3	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416	18	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAAAATTATAAAAGT	2155	False	NA	NA	False	NA	NA	NA	10181307	10176523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177584_10177628_10178462_10181051
27190	chr16	-	1774	18	FSM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	-26	-1	-26	1	multi-exon	FALSE	canonical	3	21	junction_15	122.52143375795	9	4	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTGGGTCTGTGATC	NA	False	NA	NA	False	NA	NA	NA	18630402	18599201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18629138_18629232_18630054_18630115_18630264
27191	chr2	+	2332	12	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-444	intron_retention	FALSE	canonical	3	800	junction_1	85.6019038947921	1	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCAACTGGGCTCTTC	NA	False	NA	NA	False	NA	NA	NA	164675725	164681495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676845_164677075_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680870_164681070
27192	chr13	-	3575	15	NIC	ENSMUSG00000039233.13	novel	1844	17	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	97	junction_4	16.7946784574697	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTGATTTCTCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	14214209	14172538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
27194	chr5	+	3389	19	NNC	ENSMUSG00000036435.14	novel	3371	20	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	49.9421888008748	190	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTTGATAATATTCTTA	NA	False	NA	NA	False	NA	NA	NA	76677163	76718132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685738_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
27195	chr8	-	1284	8	NNC	ENSMUSG00000033703.10	novel	3972	24	NA	NA	0	1221	intron_retention	FALSE	canonical	0	0	junction_6	37.7661980385333	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCACCGCTGGATGCCTG	1254	False	NA	NA	False	NA	NA	NA	111629080	111620330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626460_111626570_111629053
27196	chr17	-	3336	2	NIC	ENSMUSG00000039183.7	novel	1423	7	NA	NA	-40	-1	intron_retention	FALSE	canonical	3	699	junction_1	0	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCAAGGTGTCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	25105363	25101586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25104812_25105252
27197	chr8	+	3926	7	NIC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	-30	3	intron_retention	FALSE	canonical	3	424	junction_1	51.9853077534626	35	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	43633547	43646921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43643129_43643305_43643407_43646239
27198	chr4	-	168	1	Intergenic	novelGene_2164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3233	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTTTTGTTTGT	9505	False	NA	NA	False	NA	NA	NA	149417115	149416947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_149416900_149417100
27199	chr10	+	2034	3	ISM	ENSMUSG00000038587.11	ENSMUST00000045730.7	6195	4	-17	4716	-17	1102	5prime_fragment	FALSE	canonical	3	1052	junction_2	17	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCTTGTCCTCCACGGA	NA	False	NA	NA	False	NA	NA	NA	4216362	4304754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_4216669_4263742_4263858_4303141
27200	chr6	-	1475	8	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	2601.39654016524	27	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446853	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440235_51440390_51440474_51441068_51441192_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
27202	chr6	+	2550	9	NNC	ENSMUSG00000040242.15	novel	2880	7	NA	NA	18	-60	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	170.883000909979	48	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGAGAGTGTGCTGAAGA	NA	False	NA	NA	False	NA	NA	NA	146479457	146500636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792_146499368_146499417_146499818_146499936
27203	chr5	+	3743	4	NNC	ENSMUSG00000046079.17	novel	3929	3	NA	NA	53	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	227.551215236385	1	97	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTTTATCTAAATCGTAG	5021	False	NA	NA	False	NA	NA	NA	105848784	105963062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_105848952_105880095_105880241_105959589_105960496_105960537
27205	chr9	-	2287	14	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	0	16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	484.699833911755	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTGCTGTTTCTGGGCAA	NA	False	NA	NA	False	NA	NA	NA	36678929	36643705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663675_36676339_36676477_36678845
27206	chr19	-	2282	19	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-4	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	461.460951627051	1	67	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAACTCGGCTCTGCTTTG	5132	False	NA	NA	False	NA	NA	NA	53026999	52979621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991159_52992200_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001967_53013694_53013815_53026944
27209	chr4	+	1892	9	Fusion	ENSMUSG00000084350.2_ENSMUSG00000078503.10_ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	2498	5	NA	NA	13	154	multi-exon	TRUE	non_canonical	0	0	junction_1	25.1346374551136	2	77	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	939	False	NA	NA	False	NA	NA	NA	145237373	145556666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237408_145311817_145312083_145312571_145312707_145399301_145399395_145510590_145510634_145552678_145552806_145554256_145554395_145555060_145555582_145556130
27210	chr12	+	1640	12	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-6	-399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	825.981980072785	25	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	NA	False	NA	NA	NA	17316589	17334372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324519_17328506_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
27211	chr5	-	2805	8	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	1	-6	intron_retention	FALSE	canonical	3	174	junction_7	84.8203383388581	3	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCAAGTGCCTTTCCGT	NA	False	NA	NA	False	NA	NA	NA	34794468	34790998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34792307_34792394_34792876_34792952_34793851_34793937_34794128_34794270
27212	chr12	+	1256	8	Antisense	novelGene_ENSMUSG00000001270.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGACGGCTGCTCGCTGCT	7915	False	NA	NA	False	NA	NA	NA	111635967	111638728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_111636181_111636263_111636455_111636600_111636716_111637302_111637479_111637648_111637781_111637857_111638013_111638198_111638408_111638663
27213	chrX	-	2175	13	NNC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_12	570.115357478935	1	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAAAAACCTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	100128980	100122819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127701_100127881_100128426_100128585_100128877
27214	chr10	+	2886	8	NIC	ENSMUSG00000019864.15	novel	2981	9	NA	NA	3	1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	53.017132386905	8	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGTTTTTGGTCACTGT	NA	False	NA	NA	False	NA	NA	NA	43777805	43823859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43822416
27215	chr15	+	3475	15	Antisense	novelGene_ENSMUSG00000023055.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	59	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCGACTATAGGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	102615430	102630533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_102617085_102617509_102617709_102617875_102617986_102618304_102618405_102618842_102618965_102619347_102619426_102619471_102619603_102619776_102619937_102622292_102622379_102624174_102624325_102624663_102624826_102626240_102626431_102627410_102627510_102627974_102628156_102630480
27216	chr8	-	2404	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	-6	0	-3	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	690	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	NA	False	NA	NA	NA	11685760	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
27217	chr3	+	1654	13	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	0	-71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	955.982431701662	1	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGACACGTATCTCTTC	3862	False	NA	NA	False	NA	NA	NA	88204480	88229000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225830_88227766_88228013_88228320_88228453_88228750
27218	chr2	-	1596	13	ISM	ENSMUSG00000027185.16	ENSMUST00000144590.9	3497	27	-60	10678	-3	-531	5prime_fragment	FALSE	canonical	3	271	junction_9	33.0356499355873	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTACCGAGCAGGCCTC	NA	False	NA	NA	False	NA	NA	NA	103591609	103565214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
27220	chr6	+	2559	8	NNC	ENSMUSG00000038301.16	novel	2480	7	NA	NA	29	2	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	142.424917563105	321	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACTTTGTTCGATTT	NA	False	NA	NA	False	NA	NA	NA	51500909	51567652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51501015_51538997_51539045_51546773_51546889_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
27221	chr7	-	3883	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	2270	581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	287.953446758326	1	181	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAAAGACTGGACTGTCA	NA	False	NA	-50	True	NA	NA	NA	118452566	118442431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118445274_118447707_118447798_118449843_118449913_118451625_118452048_118452106
27222	chr9	+	2300	5	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	34554	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	228.042073968818	2	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	77883126	77891801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77883145_77884029_77884202_77887111_77887232_77888755_77888891_77889946
27224	chr15	+	2791	7	NNC	ENSMUSG00000022561.14	novel	2237	12	NA	NA	14	-3	intron_retention	FALSE	canonical	0	0	junction_1	107.156686938126	16	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACCTTGGGATCCTGGC	5009	False	NA	NA	False	NA	NA	NA	76215726	76219095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76216280_76216359_76216832_76216909_76217012_76217102_76218091_76218213_76218405_76218489_76218661_76218781
27225	chr3	+	861	1	Intergenic	novelGene_3123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACCCTGGCCAGACTTGA	NA	False	NA	NA	False	NA	NA	NA	51547482	51548343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_51547500_51548300
27226	chr2	+	2754	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	259	0	259	0	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	903	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	NA	False	NA	NA	NA	163837138	163860508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
27227	chr7	-	4192	9	NNC	ENSMUSG00000044702.14	novel	3304	12	NA	NA	-10	-432	intron_retention	FALSE	non_canonical	0	0	junction_5	61.0029456256007	2	139	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCACATTGATGACTCC	NA	False	NA	NA	False	NA	NA	NA	121732152	121711226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_121712590_121713531_121713694_121720276_121720439_121722859_121722932_121723479_121724154_121726271_121727667_121728145_121728240_121728896_121728957_121731942
27228	chr4	-	2567	3	NIC	ENSMUSG00000036078.17	novel	468	3	NA	NA	0	-3	intron_retention	FALSE	canonical	3	474	junction_1	65	14	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGTTTCCTTATGTGTC	3	True	NA	NA	False	NA	NA	NA	41741320	41738495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41740643_41740775_41740977_41741101
27229	chr9	+	2227	17	NNC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	72	-3	intron_retention	FALSE	canonical	1	17	junction_5	222.704961776787	3	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACATTGTGTGGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	21914173	21925513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917837_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924232_21924311_21924463_21925207
27230	chr17	-	2886	15	Antisense	novelGene_ENSMUSG00000002372.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.257539376818856	14	35	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGGAGGGAAGCTCGCA	5530	False	NA	NA	False	NA	NA	NA	57018756	56980280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56980412_56993006_56993060_57003599_57003637_57003715_57003787_57008019_57008541_57009761_57009889_57012454_57012569_57013859_57013961_57014157_57014238_57014849_57014952_57015168_57015279_57016211_57016331_57016990_57017222_57017588_57017775_57017853
27231	chr17	+	1802	8	ISM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	306	10064	3	1001	intron_retention	TRUE	canonical	3	650	junction_5	32.4276274249006	1	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGATTCAGGGTCACCT	NA	False	NA	NA	False	NA	NA	NA	32255379	32271775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656
27232	chr7	-	3742	11	NIC	ENSMUSG00000044465.20	novel	3443	12	NA	NA	-2	-27	intron_retention	FALSE	canonical	3	83	junction_4	99.153466908626	160	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCAATATGTATAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	105049220	105027845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105039100_105039227_105039560_105049090
27233	chr16	+	2885	16	NIC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	26	75	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	37.8355505958204	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTGGCTTTCAGAAAAAC	6427	False	NA	NA	False	NA	NA	NA	44167802	44207581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_44167870_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
27234	chr9	-	2751	11	FSM	ENSMUSG00000033629.7	ENSMUST00000036615.7	2709	11	-48	6	-48	-6	multi-exon	FALSE	canonical	3	252	junction_1	24.7620677650313	411	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTAATAACTTGTGCTTAA	NA	False	NA	NA	False	NA	NA	NA	64929023	64894270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_64895812_64897598_64897731_64898255_64898363_64899538_64899652_64905476_64905605_64908262_64908374_64911538_64911591_64912889_64913055_64913842_64913917_64917755_64917799_64928738
27235	chr1	+	3500	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	61	1	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	12.9479728143057	108	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTTGTGGTTCAGGCA	NA	False	NA	NA	False	NA	NA	NA	44158220	44183931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_44158356_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
27236	chr5	+	3078	3	FSM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	7	0	7	0	multi-exon	FALSE	canonical	3	201	junction_1	9	365	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTATATTTAATGAT	NA	False	NA	NA	False	NA	NA	NA	108416769	108428392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108417676_108423434_108423599_108426384
27237	chr2	-	3023	1	ISM	ENSMUSG00000075415.14	ENSMUST00000073879.12	8469	14	109155	3419	22797	-1430	mono-exon	FALSE	NA	NA	NA	NA	NA	12	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGTGCTGTGTA	9387	False	NA	NA	False	NA	NA	NA	30922659	30919636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_30919600_30922700
27239	chr3	+	2962	16	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	19	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_15	123.084180768917	4	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATATTGTGTTTACCTG	NA	False	NA	NA	False	NA	NA	NA	95467007	95494902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467035_95467121_95467247_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95493210
27240	chr16	-	2907	10	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	29	67	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	367.030122893355	1	113	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTAAGAGTTGTACT	6295	False	NA	NA	False	NA	NA	NA	38370555	38345431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38363195_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
27242	chr3	+	2460	11	NNC	ENSMUSG00000027775.10	novel	3011	16	NA	NA	5131	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	347.371861266856	1	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTATTTGGAGGATAAAT	NA	False	NA	NA	False	NA	NA	NA	67497209	67511564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67497291_67499907_67500006_67501631_67501731_67502100_67502217_67503503_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
27243	chr14	+	2306	14	NIC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	115.117691256543	651	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTCTGGTGCCAGCAT	2	True	NA	NA	False	NA	NA	NA	25842606	25887224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
27244	chr19	+	1659	5	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-54	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2538.25268393436	13	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTCTTGTGTCTGTG	4121	False	NA	NA	False	NA	NA	NA	41900422	41907104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044_41906804_41906863
27246	chr3	+	1578	3	ISM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	2097	-9	3	8	3prime_fragment	FALSE	canonical	3	519	junction_1	1	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	96467372	96469182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96467411_96467523_96467676_96467794
27247	chr2	-	1021	6	Antisense	novelGene_ENSMUSG00000001403.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	188	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	164614815	164611130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_164611275_164611898_164612002_164613182_164613300_164613773_164613977_164614084_164614144_164614420
27248	chr6	-	2547	6	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	892.561482476137	1	99	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847865	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824529_148827510_148827634_148830006_148830134_148832048_148832149_148834499_148834647_148847789
27249	chr5	-	2065	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	-98	-1	27	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	1132	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	31350456	31344910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
27250	chr15	+	1370	15	ISM	ENSMUSG00000008690.16	ENSMUST00000074552.12	3299	20	33	2338	6	-187	5prime_fragment	FALSE	canonical	1	369	junction_14	175.038436012302	1	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTGCCTTTAGATGGAA	NA	False	NA	NA	False	NA	NA	NA	89239971	89254691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597
27251	chrX	+	2565	13	NIC	ENSMUSG00000031065.15	novel	3270	16	NA	NA	-209	-7	intron_retention	FALSE	canonical	3	1538	junction_12	86.3955293982276	539	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCAAAGTCTGGTTATAAA	2749	False	NA	NA	False	NA	NA	NA	20560312	20566112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563204_20563358_20563450_20564689_20564768_20564847
27252	chr13	+	2667	3	NIC	ENSMUSG00000058569.9	novel	1420	5	NA	NA	4	4	intron_retention	FALSE	canonical	3	640	junction_2	7	8	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAACTGTTCGTGGTTAC	NA	False	NA	NA	False	NA	NA	NA	55740974	55745504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_55742644_55743280_55743428_55744653
27253	chr16	+	1370	2	Genic_Genomic	ENSMUSG00000095834.3	novel	513	1	NA	NA	-250	1187	multi-exon	FALSE	canonical	3	950	junction_1	0	1	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAACCCCTGTCTCAAAA	5912	False	NA	NA	False	NA	NA	NA	3548123	3550073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_3549120_3549699
27254	chr8	-	2256	13	NNC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	3	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	601.77508256823	1	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCAATTAATTTTTTTAA	7642	False	NA	NA	False	NA	NA	NA	41827669	41793240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41793945_41794052_41794723_41795921_41795979_41796555_41796680_41796766_41796886_41799138_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802620_41807908_41807955_41813289_41813337_41827546
27256	chr10	-	2951	8	ISM	ENSMUSG00000020076.8	ENSMUST00000218372.2	2375	16	14016	-203	-1231	-8	3prime_fragment	FALSE	canonical	3	235	junction_7	18.9349046008924	8	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTATTCTGTGTTAAG	6409	False	NA	NA	False	NA	NA	NA	62471516	62451801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755
27257	chr4	+	2849	9	NNC	ENSMUSG00000059939.14	novel	723	7	NA	NA	2904	1	intron_retention	FALSE	non_canonical	0	0	junction_3	89.795601228568	2	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTTGAGGTCATGATGT	1727	False	NA	NA	False	NA	NA	NA	156201256	156211721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156201306_156201466_156201561_156203620_156203697_156204291_156204630_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
27259	chr2	-	2557	13	NNC	ENSMUSG00000013465.20	novel	2637	13	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	170.507799593515	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCATGGTGAGGAATC	NA	False	NA	NA	False	NA	NA	NA	25101379	25089731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25090529_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
27262	chr11	-	1918	6	NIC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	536.12147877137	45	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	6003	False	NA	NA	False	NA	NA	NA	102919105	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102918085_102918248_102918974
27264	chr13	-	4347	2	ISM	ENSMUSG00000021614.17	ENSMUST00000109546.9	12427	15	39296	34139	18758	21232	internal_fragment	FALSE	canonical	2	4	junction_1	0	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCGTCAACCCTGCACA	NA	False	NA	NA	False	NA	NA	NA	89851332	89837569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_89841621_89851036
27265	chr10	-	2889	4	NNC	ENSMUSG00000062931.16	novel	2124	4	NA	NA	2	-1	intron_retention	TRUE	non_canonical	0	0	junction_1	67.7462586092808	322	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTTATTTATGTTGT	NA	False	NA	NA	False	NA	NA	NA	82077112	82060688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_82061239_82061321_82063426_82063632_82063760_82077004
27266	chr10	+	2626	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-7	-22	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_7	314.433339929969	1	66	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAATAAAATGCCTTAGTT	NA	False	NA	NA	False	NA	NA	NA	21171949	21244760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218352_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243731_21244187
27267	chrX	+	1816	15	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	1	-479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1010.9794225686	12	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGATGTAGCCATCCTGG	NA	False	NA	NA	False	NA	NA	NA	20524660	20548939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538282_20547696_20547754_20548141_20548244_20548347_20548449_20548616
27268	chr1	+	1650	3	Antisense	novelGene_ENSMUSG00000038633.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCGAGGCCCGGCTCTAG	NA	False	NA	NA	False	NA	NA	NA	182103537	182110319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182104395_182106623_182107284_182110186
27269	chr3	-	1882	6	NNC	ENSMUSG00000027506.16	novel	6317	6	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1152.78608596738	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGGTTTCAATATTTAT	NA	False	NA	NA	False	NA	NA	NA	9069495	8994656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012582_9018778_9018860_9069464
27270	chr15	-	597	1	ISM	ENSMUSG00000037487.8	ENSMUST00000228368.2	2953	8	11102	8	2683	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	21	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCAAGTAACATTGAAGAA	4513	False	NA	-79	True	NA	NA	NA	37968176	37967579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_37967600_37968200
27273	chr9	+	3029	9	NNC	ENSMUSG00000111390.2	novel	3539	2	NA	NA	-2276	19021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGGGTCACACCCCAAT	7854	False	NA	NA	False	NA	NA	NA	27007570	27032660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_27009697_27010006_27010065_27010142_27010273_27011380_27011482_27012536_27012737_27013159_27013312_27016801_27016915_27017642_27017710_27032578
27275	chr12	-	2675	13	NIC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-1	-15	intron_retention	FALSE	canonical	3	814	junction_12	100.406534758562	5	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAGAAAAAGTCTCAATTC	NA	False	NA	NA	False	NA	NA	NA	87519040	87496694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
27276	chr2	+	1913	8	NIC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-11	0	intron_retention	FALSE	canonical	3	229	junction_1	36.5217296235252	259	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	80	False	NA	NA	False	NA	NA	NA	13579121	13587636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_13579806_13580351_13580413_13583223_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
27277	chr11	-	2229	7	FSM	ENSMUSG00000017561.17	ENSMUST00000103233.10	2230	7	-4	5	-4	-5	multi-exon	FALSE	canonical	0	0	junction_1	206.037820152838	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATGTATTTTGTGGTTT	4537	False	NA	NA	False	NA	NA	NA	79971768	79937323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_79938564_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
27278	chr16	-	2085	9	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.606340763598	144	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATGTGCGCATGTGCAC	NA	False	NA	NA	False	NA	NA	NA	5073820	5062017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_5062436_5062491_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
27279	chr4	-	2779	7	NIC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	0	-1813	intron_retention	FALSE	canonical	3	1232	junction_6	41.0829107483337	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGTGTTACACACACAC	NA	False	NA	NA	False	NA	NA	NA	135080462	135067392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135067934_135068157_135068347_135069680_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
27280	chr2	-	3080	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	59	0	-26	0	multi-exon	FALSE	canonical	3	54	junction_1	0	167	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATACAGCATGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	92290080	92283108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_92285120_92289011
27282	chr2	+	3120	6	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-4	intron_retention	FALSE	canonical	3	1993	junction_1	246.739214556584	1	152	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATAGTATGTGTGTATT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130120211_130120816
27283	chr12	+	2532	13	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	77.4279234729521	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGCTCTTGTTTTA	1856	False	NA	NA	False	NA	NA	NA	84363898	84390498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84363949_84366628_84366836_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
27284	chr2	-	1570	5	NNC	ENSMUSG00000074656.13	novel	3785	3	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6014.61343313101	72	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCATTGCTTTTGTGTGT	3728	False	NA	NA	False	NA	NA	NA	154734759	154713330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714535_154729620_154729728_154730102_154730281_154734609
27286	chr15	+	3206	9	Antisense	novelGene_ENSMUSG00000041815.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCGAGCCCGCCCCGCGGC	NA	False	NA	NA	False	NA	NA	NA	83010179	83033497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83012255_83013387_83013461_83015680_83015812_83016779_83016855_83017345_83017528_83019494_83019591_83021668_83021749_83022326_83022740_83033416
27287	chr2	-	2042	11	NIC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	-6	1	intron_retention	FALSE	canonical	3	745	junction_5	50.444523984274	91	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATCTGGTTTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	130126360	130121231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
27288	chr19	-	3121	20	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	791.440157905641	1	156	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3910	False	NA	NA	False	NA	NA	NA	5345439	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324550_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329976_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336608_5336686_5336852_5336977_5337096_5337294_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344407_5345256
27289	chr2	-	1937	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-1505	-719	intron_retention	TRUE	non_canonical	0	0	junction_1	147.078210486802	6	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATAAGCGAACACATACA	NA	False	NA	NA	False	NA	NA	NA	177477944	177474302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177474330_177474581_177476105_177476312_177476443_177477687
27290	chr10	+	3585	10	FSM	ENSMUSG00000038332.14	ENSMUST00000099931.11	3809	10	224	0	224	0	multi-exon	FALSE	canonical	3	40	junction_1	18.7662686623146	90	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	216	False	NA	NA	False	NA	NA	NA	41686154	41784420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41687297_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
27291	chr1	+	2917	2	FSM	ENSMUSG00000053332.14_ENSMUSG00000065228.3_ENSMUSG00000064440.3_ENSMUSG00000064816.3	ENSMUST00000163081.2	370	2	-2143	-404	0	-3	multi-exon	FALSE	canonical	3	5177	junction_1	0	1	98	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACATGAACTGTGAAGTG	NA	False	NA	NA	False	NA	NA	NA	160862735	160866099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160865118_160865564
27292	chr2	-	2872	8	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	-1	-16	intron_retention	FALSE	canonical	3	250	junction_5	28.9178992660114	3	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTTAATGTGTCCTTG	9000	False	NA	NA	False	NA	NA	NA	25246372	25242317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25244306_25244479_25244647_25244752_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
27293	chr5	+	3699	17	FSM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	-9	-1	1	1	multi-exon	FALSE	canonical	3	53	junction_8	14.9769353924626	121	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGGGCGCGGTGTCTTC	8691	False	NA	NA	False	NA	NA	NA	142449799	142464466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
27294	chr17	+	1568	2	Genic_Genomic	ENSMUSG00000061062.6	novel	1444	1	NA	NA	44	513	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	78799054	78800967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_78800417_78800761
27295	chr7	-	1776	9	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	87	-1	intron_retention	FALSE	canonical	3	1495	junction_3	220.432387593112	4	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACTGTCTTGATGTGTT	NA	False	NA	NA	False	NA	NA	NA	79764965	79744598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79744952_79745368_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
27296	chr6	-	4257	16	NIC	ENSMUSG00000029701.16	novel	4465	19	NA	NA	338	-3465	intron_retention	FALSE	canonical	3	173	junction_9	21.5588084601683	43	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGCAAAAAGAAGTTGGA	13	True	NA	NA	False	NA	NA	NA	29164667	29128644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
27297	chr11	-	1573	8	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	-34	intron_retention	FALSE	canonical	3	1167	junction_1	101.827384953806	1	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATGCCCCAGAAAGAACG	NA	False	NA	NA	False	NA	NA	NA	119190844	119183700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
27298	chr11	+	1732	11	NNC	ENSMUSG00000059552.14	novel	1822	11	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	764.920388014334	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471232	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471299_69477761_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
27299	chr11	-	2315	11	ISM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	1143	1	1068	0	3prime_fragment	FALSE	canonical	2	960	junction_1	152.08316803644	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGAGTGCAGATCTTTG	NA	False	NA	NA	False	NA	NA	NA	119189772	119179189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630
27300	chr5	+	1643	10	NIC	ENSMUSG00000035297.15	novel	872	8	NA	NA	50	4	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	432.071610434208	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTGGTTTTTAATTAGT	5751	False	NA	NA	False	NA	NA	NA	100666652	100695650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_100666802_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
27301	chr9	+	2196	17	NIC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_10	128.780199734858	1222	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21914313	21925518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
27302	chr18	-	1293	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	20	772	-19	361	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAAGAACCTGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	38472009	38461374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
27304	chr15	-	4350	36	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-5	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	213.404672595785	1	210	22	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGTACACTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	76491716	76480068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480939_76481044_76481116_76481268_76481388_76481542_76481638_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483651_76483863_76483939_76484115_76484189_76484327_76484412_76484595_76484663_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486516_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
27305	chr10	+	3778	2	Antisense	novelGene_ENSMUSG00000097327.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGCAGCCGCGAAACTCC	NA	False	NA	NA	False	NA	NA	NA	22020205	22024712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_22023653_22024381
27307	chr9	+	1315	1	Genic_Genomic	ENSMUSG00000036781.14	novel	NA	NA	NA	NA	322	683	mono-exon	FALSE	NA	NA	NA	NA	NA	49	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCCCAAAGGTCCCCCA	NA	False	NA	NA	False	NA	NA	NA	66856166	66857481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_66856200_66857500
27308	chr2	+	2905	9	ISM	ENSMUSG00000026743.17	ENSMUST00000114669.2	3865	16	70425	0	26330	0	3prime_fragment	FALSE	canonical	3	221	junction_3	21.9260119492807	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCTCTGTGCCCTGCCT	8496	False	NA	NA	False	NA	NA	NA	18201391	18217197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
27309	chr8	-	1455	7	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	30	-243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	471.464886167452	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTATTGTGTCTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	85573425	85568721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569423_85571066_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
27310	chr4	-	2265	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-1111	93	intron_retention	FALSE	non_canonical	0	0	junction_1	30.169889330626	158	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAGCACTTCTGGATTG	NA	False	NA	NA	False	NA	NA	NA	116414244	116408736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116409308_116409505_116410927_116411964_116412101_116414107
27311	chr11	-	3776	14	NIC	ENSMUSG00000061306.17	novel	4554	16	NA	NA	57	2	combination_of_known_junctions	FALSE	canonical	3	41	junction_13	143.204451023351	8	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCGAGTCGAGTTGGTTT	5120	False	NA	NA	False	NA	NA	NA	120042048	119995275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120041805
27313	chr5	+	4207	2	Genic_Genomic	ENSMUSG00000005374.14	novel	7488	7	NA	NA	5233	2835	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACCGCGCATGGTGAT	NA	False	NA	NA	False	NA	NA	NA	135186804	135191510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_135186871_135187369
27314	chr13	-	2558	9	NNC	ENSMUSG00000025871.19	novel	2727	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	180.052075800308	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	54713153	54699035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_54700631_54700710_54700851_54701010_54701067_54704357_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
27315	chr14	+	1982	9	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	529.972154339263	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAAGCCACAGGACTCC	NA	False	NA	NA	False	NA	NA	NA	55779868	55786322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785581_55785761
27317	chr1	-	2603	7	Antisense	novelGene_ENSMUSG00000026456.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCGCCGCGGGGCGGGC	5234	False	NA	NA	False	NA	NA	NA	134339459	134333733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_134333784_134334057_134334200_134334335_134334409_134334782_134334889_134335309_134336228_134337339_134337422_134338227
27318	chr12	-	2196	25	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-12	-2346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	703.324185367048	1	50	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAACTATATTTTCATG	NA	False	NA	NA	False	NA	NA	NA	13299176	13269319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269489_13270724_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280304_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299106
27319	chr18	+	2724	4	NNC	ENSMUSG00000057561.11	novel	2865	3	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	706.163972144965	1	100	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTAAATGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46730770	46743274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731707_46731772_46740570_46741500_46741640
27320	chr4	-	2613	6	Antisense	novelGene_ENSMUSG00000028837.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGGGGGTGACGCAAGA	NA	False	NA	NA	False	NA	NA	NA	126603504	126571459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_126571638_126577913_126578037_126580818_126580892_126599849_126600014_126601346_126602037_126602119
27321	chr16	-	1963	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	130	0	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	1	79	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGATGGTTCCTGTCAC	NA	False	NA	NA	False	NA	NA	NA	45975440	45973477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973500_45975400
27322	chr1	+	1445	2	Genic_Genomic	ENSMUSG00000101188.2	novel	1218	1	NA	NA	60	556	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	60743150	60744864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_60743238_60743506
27323	chr9	+	1548	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	-12	2	-12	-2	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	14	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCTGCTTTGTTCCACA	NA	False	NA	NA	False	NA	NA	NA	64080644	64085946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
27324	chr16	+	2342	12	FSM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	-107	0	-47	0	multi-exon	FALSE	canonical	3	14	junction_1	76.7194093342424	125	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	341	False	NA	NA	False	NA	NA	NA	18066818	18071366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
27325	chr1	-	2737	14	NNC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	53.2145373206281	1	40	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACATTAATGTGGAATTTT	968	False	NA	NA	False	NA	NA	NA	150268496	150237064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_150238640_150239241_150239315_150247893_150247951_150250550_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268440
27326	chr5	-	4401	28	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	74.6266059492235	2	178	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGGTGCAGTCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	108777621	108717290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754804_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
27327	chr4	+	2562	10	NIC	ENSMUSG00000040859.15	novel	2823	11	NA	NA	106	-45	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	38.7550076413868	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTACAGATTTGCCATA	NA	False	NA	NA	False	NA	NA	NA	129355734	129382246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129355796_129359022_129359140_129360706_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
27329	chr8	+	2118	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	36	-16	0	-5	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	1075	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGAAGCCATCTGCATGG	NA	False	NA	NA	False	NA	NA	NA	85415911	85426432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
27330	chr4	-	1964	6	NNC	ENSMUSG00000028955.4	novel	2120	5	NA	NA	-14	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	84.9305598709911	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGATCCTGTGTCGTGTT	NA	False	NA	NA	False	NA	NA	NA	151142434	151131766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_151132166_151132335_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
27332	chr8	+	3695	7	FSM	ENSMUSG00000013878.19	ENSMUST00000124757.8	1297	7	125	-2523	29	-23	multi-exon	FALSE	canonical	2	7	junction_5	26.5685695679856	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAAATAGTTTATCTA	NA	False	NA	NA	False	NA	NA	NA	26609532	26633876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26629007_26629119_26630838
27333	chr15	-	4262	29	FSM	ENSMUSG00000022377.17	ENSMUST00000175799.8	4237	29	-44	19	-44	-19	multi-exon	FALSE	canonical	3	31	junction_27	27.267640798094	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGAAGTTACAAGATTGCA	NA	False	NA	NA	False	NA	NA	NA	64254649	63960408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030730_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197_64184325_64221676_64221763_64254565
27334	chr17	-	1817	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	51	7997	4	-66	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	1593	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGTGATCTATGTGAGC	NA	False	NA	NA	False	NA	NA	NA	30831582	30811906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
27335	chr3	+	2693	4	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-4	-15	intron_retention	FALSE	canonical	3	438	junction_2	30.8796948747159	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTTTTTCTGTATAT	7040	False	NA	NA	False	NA	NA	NA	108291162	108295480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291748_108292285_108292725_108293608_108294712_108294914
27336	chr3	+	1741	4	ISM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	32542	0	-18364	0	3prime_fragment	FALSE	canonical	3	1699	junction_1	75.5968841215621	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	8606961	8626666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_8606997_8610632_8610806_8619851_8620044_8625325
27337	chrX	-	1618	9	NNC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	624.210251037261	2308	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72140484	72129898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140413
27338	chr3	-	3115	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20566	2279	intron_retention	FALSE	canonical	3	15	junction_1	0	58	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATATGGTGTTTCTATC	NA	False	NA	NA	False	NA	NA	NA	103126857	103103262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103106313_103126792
27339	chr4	-	1844	5	NIC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	1912	junction_3	59.5246797555434	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
27340	chr2	-	4385	28	NNC	ENSMUSG00000039834.18	novel	4587	28	NA	NA	176	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	25.6459485619192	7	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTTTGTATATGTGCTA	NA	False	NA	NA	False	NA	NA	NA	164753501	164733801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164734212_164734299_164734382_164734486_164734527_164734606_164734691_164734797_164734873_164735165_164735270_164735392_164735536_164735620_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749495_164749572_164749879_164750074_164750153_164751125_164751364_164752541_164752793_164753436
27341	chr17	-	3270	14	NNC	ENSMUSG00000024006.18	novel	3351	14	NA	NA	13	-9	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_10	186.401805613826	1	136	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCGAACTGTGGTGGAT	NA	False	NA	NA	False	NA	NA	NA	29226902	29189862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210276_29210395_29211390_29211443_29218982_29219116_29226684
27342	chr5	-	2349	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	567.665830306844	1	94	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTTGTTAATAACTCTG	2308	False	NA	-101	True	NA	NA	NA	138170092	138162860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167826_138167987_138168578_138168659_138169987
27343	chr6	-	4419	7	NIC	ENSMUSG00000030346.17	novel	2233	9	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	27	junction_4	85.8339805800839	12	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACTGGAGGGACTTGG	5301	False	NA	NA	False	NA	NA	NA	126916514	126900015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126907066_126911669_126911813_126912915_126912972_126916456
27344	chr15	-	1092	2	Antisense	novelGene_ENSMUSG00000042406.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	374	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAACACTTCGCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	80141742	80140538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80140722_80140833
27347	chr4	+	5106	27	FSM	ENSMUSG00000028532.15	ENSMUST00000030257.15	5765	27	656	3	656	-3	multi-exon	FALSE	canonical	3	174	junction_5	18.5926832335326	108	14	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGAGGGGCTGCTGGTATC	NA	False	NA	NA	False	NA	NA	NA	100634527	100861738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_100634566_100722178_100722242_100754853_100755003_100775238_100775346_100806269_100806397_100809202_100809348_100810230_100810448_100816646_100816797_100821622_100821857_100823381_100823532_100824142_100824267_100825253_100825372_100828077_100828247_100831202_100831346_100831975_100832158_100833542_100833654_100838167_100838291_100840501_100840602_100840690_100840808_100845278_100845440_100845747_100845835_100846575_100846693_100848020_100848173_100849925_100850088_100851231_100851310_100851931_100852034_100860058
27348	chr11	-	2131	12	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-63	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	280.296065433535	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATATGCAAGTGGTGGT	8467	False	NA	NA	False	NA	NA	NA	69572735	69563947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571083_69571320_69571677_69572488
27349	chr9	+	2554	7	ISM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	-4	0	-4	0	intron_retention	FALSE	canonical	3	310	junction_5	38.7542112407012	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	533	False	NA	NA	False	NA	NA	NA	58489570	58560161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540
27350	chr15	-	1899	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	-26	8	-15	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	79	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	75952788	75942038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
27351	chr10	-	4048	18	Antisense	novelGene_ENSMUSG00000069601.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTCAGACCGAAACAT	NA	False	NA	NA	False	NA	NA	NA	69841396	69761759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_69762022_69763518_69763647_69768221_69768324_69786778_69786887_69791753_69791980_69794746_69794901_69809549_69809767_69811878_69812083_69813539_69813637_69814297_69814528_69815145_69815272_69816099_69816223_69817943_69818028_69830201_69830275_69833922_69834057_69835184_69835328_69837751_69838430_69840437
27352	chr15	-	4785	9	FSM	ENSMUSG00000016552.14	ENSMUST00000016696.13	4793	9	-4	12	-4	-8	multi-exon	TRUE	canonical	3	38	junction_8	9.62337648645214	68	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTAAACAATTTCTGCT	8655	False	NA	NA	False	NA	NA	NA	77840926	77824733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77827593_77829778_77829950_77831217_77831460_77832553_77832720_77836169_77836337_77836494_77836762_77837482_77837735_77839788_77840290_77840766
27353	chr14	+	2965	10	NNC	ENSMUSG00000021981.11	novel	3037	11	NA	NA	-15	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	105.035208676559	2	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCACAGTTTAAAGACCAA	NA	False	NA	NA	False	NA	NA	NA	59678405	59786316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764269_59776508_59776655_59784434
27355	chr7	+	2419	7	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	44	junction_1	303.444347817227	21	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43896233_43896661_43896841_43897333_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
27356	SIRV5	+	1894	18	NNC	SIRV5A	novel	1984	18	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4050.59422613215	2	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTATAGGTTTACCGC	NA	False	NA	NA	False	NA	NA	NA	1019	10980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1992_2034_2119_2157_2270_2489_3298_3405_3483_3641_5404_5451_5543_5627_6111_6164_6344_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8609_10907
27357	chr1	-	2120	15	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	689.490894702425	2	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	128345096	128291443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128299883_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314909_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
27358	chr8	+	2740	4	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	136	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGGGTAGGCTGGAATG	NA	False	NA	NA	False	NA	NA	NA	43748099	43760071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43749573_43753663_43753745_43757514_43758077_43759447
27359	chr11	-	2949	3	ISM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	112	1	80	-1	3prime_fragment	FALSE	canonical	3	265	junction_2	2.5	306	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCCTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	80032889	80027504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_80028106_80028743_80028894_80030691
27365	chr5	+	1927	15	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	410	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1525.2932555106	1	56	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGCTACTGGATCATT	NA	False	NA	NA	False	NA	NA	NA	129864471	129875192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867002_129867642_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588_129874786_129874968
27366	chr8	+	2520	12	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	4	-13	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	429.20994111707	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATGGGCATTTTAAACAAG	2107	False	NA	NA	False	NA	NA	NA	13388754	13428429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13424209_13424309_13427141
27367	chr19	+	2269	9	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	130.312125299221	682	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTACTTGATGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	60800048	60824669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809749_60810729_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
27368	chr11	+	1321	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-15	multi-exon	FALSE	non_canonical	0	0	junction_2	980	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120653981_120654237
27369	chr9	+	1962	14	FSM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	29	5	29	-5	multi-exon	FALSE	canonical	3	1100	junction_8	84.5408762866438	2532	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAATGAGTTTGGGTTGCT	NA	False	NA	NA	False	NA	NA	NA	59446851	59472387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
27370	chr1	+	1996	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	791.515817207015	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGTTTTGTGATCT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724274_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737610_59740033_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
27371	chr13	-	997	5	ISM	ENSMUSG00000021572.10	ENSMUST00000222609.2	3231	11	-20	16071	0	326	5prime_fragment	FALSE	canonical	3	100	junction_1	20.0919760103381	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACCAGGATCTCAGAACTT	NA	False	NA	NA	False	NA	NA	NA	74210380	74200689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
27372	chr7	+	3641	4	ISM	ENSMUSG00000004610.5	ENSMUST00000206411.2	701	6	-13	9	7	-8	intron_retention	FALSE	canonical	3	1745	junction_1	133.129844721443	13	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCCAAGCCACTGCCTC	1962	False	NA	NA	False	NA	NA	NA	43093560	43107196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941
27373	chr10	-	2432	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	318	7	13	1	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	923	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCAGTCTGGATCCTTG	NA	False	NA	NA	False	NA	NA	NA	7539054	7505143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
27374	chr16	+	2682	20	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1144.38894653078	1	107	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAAGGTCTCTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	20470442	20482157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471465_20473578_20473793_20474002_20474162_20474308_20474454_20474630_20474696_20475296_20475414_20475646_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
27375	chr4	+	1798	10	NNC	ENSMUSG00000028601.19	novel	1319	10	NA	NA	-214	-3	intron_retention	FALSE	canonical	0	0	junction_2	311.127023402594	3324	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCTTGTGCTGGAATT	NA	False	NA	NA	False	NA	NA	NA	108022419	108036500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108022859_108026911_108026984_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
27376	chr3	+	2257	17	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-3	-357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	428.289311534855	2	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTGCTGATTTTT	4846	False	NA	NA	False	NA	NA	NA	34074243	34124114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103323_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065_34123658_34124048
27378	chr16	+	2059	9	FSM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	32	780	-17	36	multi-exon	FALSE	canonical	1	126	junction_1	222.417084269622	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGGCTCTGGAGTGA	NA	False	NA	NA	False	NA	NA	NA	38383205	38411744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
27379	chr6	-	2795	15	NNC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	-19	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	74.6263139562305	10	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTAAGCTTGACATTGC	NA	False	NA	NA	False	NA	NA	NA	39354628	39312914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336918_39341423_39341546_39343822_39343981_39354552
27382	chr4	+	2793	17	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	71.776971193761	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTGTGGTCCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	141172006	141194537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174649_141175353_141175538_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192878_141193032_141193154_141193287_141193419_141193658_141193871_141193984_141194075_141194153
27383	chr12	+	2039	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1935.17527837266	1	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTTGAACTTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	24758281	24764086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762742_24762889_24762974_24763078
27385	chr2	-	4670	11	FSM	ENSMUSG00000027339.16	ENSMUST00000028814.15	8233	11	116	3447	116	-10	multi-exon	FALSE	canonical	1	8	junction_10	8.85494212290515	79	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGAAGCGAGCCCCTGT	NA	False	NA	NA	False	NA	NA	NA	131871805	131834781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871670
27387	chr14	-	3029	21	NIC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	-35	-3849	combination_of_known_junctions	FALSE	canonical	3	51	junction_18	68.3302824522188	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATCTTTTGAATTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	26692497	26644793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26685603_26685664_26686815_26686915_26692357
27388	chr11	+	2017	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	-29	-411	-29	411	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	3208	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTGTCTACAATATTCC	NA	False	NA	NA	False	NA	NA	NA	40624464	40631284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
27389	chr11	+	1080	1	Intergenic	novelGene_2256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATAGACTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	40631484	40632564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_40631500_40632600
27390	chr7	-	2471	9	NNC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	-6	-1	intron_retention	FALSE	canonical	0	0	junction_4	647.519871799314	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACTGTCTTGATGTGTT	NA	False	NA	NA	False	NA	NA	NA	79765058	79744598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79746019_79747551_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
27391	chr11	+	3281	23	NIC	ENSMUSG00000020549.15	novel	2884	24	NA	NA	-8	0	intron_retention	FALSE	canonical	3	305	junction_17	22.9463981941098	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTTCAGTGTGGGGTC	NA	False	NA	NA	False	NA	NA	NA	64869888	64892426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
27392	chr18	-	1675	6	NNC	ENSMUSG00000024587.11	novel	1492	13	NA	NA	34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2324.10908521954	2	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGCTGACTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	64638087	64632719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633719_64634373_64634506_64634814_64634947_64636578_64636682_64637404_64637545_64637918
27393	chr4	+	2639	10	FSM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	23	-2	2	0	multi-exon	FALSE	canonical	3	69	junction_5	55.5417760689095	67	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8294	False	NA	NA	False	NA	NA	NA	156194477	156211722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
27395	chr5	-	2448	8	NNC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	0	19650	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	642.724970539578	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTATACCACGAATGTTT	NA	False	NA	NA	False	NA	NA	NA	30278615	30243549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30245047_30266036_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
27396	chr2	-	2357	8	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-4	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.4944959851495	137	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	NA	False	NA	NA	NA	29677676	29666117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29666232_29666386_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
27397	chr8	+	2462	11	ISM	ENSMUSG00000003808.19	ENSMUST00000003906.13	1826	13	21	7	1	-6	intron_retention	FALSE	canonical	3	551	junction_9	53.8984229824955	8	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGGACTCTGTTGTCATT	NA	False	NA	NA	False	NA	NA	NA	85583638	85595879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637
27398	chr18	-	2731	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	-250	2284	-249	-2284	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	1189	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTACCAGAATAACTTAT	NA	False	NA	NA	False	NA	NA	NA	46874896	46865494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
27399	chr12	+	1640	13	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	22	-399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	796.398385789982	32	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	NA	False	NA	NA	NA	17316630	17334372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333245_17333936
27400	chr12	+	2988	23	FSM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	10	-1	10	1	multi-exon	FALSE	canonical	3	25	junction_22	24.2086317506725	104	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTTTCTTCCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	31704877	31987630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
27401	chr13	+	679	4	ISM	ENSMUSG00000039242.11	ENSMUST00000223483.2	1876	11	-129	16846	-76	3366	5prime_fragment	FALSE	canonical	2	4	junction_3	90.0111104253247	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGGTATAAGCCCGTG	NA	False	NA	NA	False	NA	NA	NA	14129129	14155240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_14129505_14140894_14141043_14145351_14145453_14155185
27404	chr10	-	2906	11	NIC	ENSMUSG00000055531.13	novel	2227	11	NA	NA	-27	691	combination_of_known_junctions	FALSE	canonical	3	8	junction_10	236.356425764141	9	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATTGTGTGTGTATTCCT	8542	False	NA	NA	False	NA	NA	NA	117215947	117184252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117213482_117213607_117215884
27406	chr11	+	2851	17	Fusion	ENSMUSG00000001755.13_ENSMUSG00000017801.16	novel	2138	10	NA	NA	21	5	multi-exon	FALSE	canonical	2	14	junction_10	68.7531817445564	4	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTGCTTGGTCTCTTG	3592	False	NA	NA	False	NA	NA	NA	100973471	100982349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073_100977189_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
27408	chr6	-	3239	13	NIC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-466	-5	intron_retention	FALSE	canonical	3	496	junction_9	64.3965578790254	1	122	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGCATCCTGTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	125151958	125144974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742
27409	chr5	+	2428	3	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	1	intron_retention	FALSE	canonical	3	14010	junction_1	723.5	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121343919_121344729_121345259_121346453
27410	chr13	-	1372	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-18	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.944400230224	6	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314467	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311432_34311601_34312025_34312318_34312515_34312854_34312966_34313228_34313338_34314159
27412	chr18	+	2531	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26644	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	449.437085560984	1	74	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAATTAAAGATGTAATCA	6441	False	NA	-81	True	NA	NA	NA	77126259	77240819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185117_77185171_77185420_77193500_77193586_77207607_77207652_77207747_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
27413	chr2	-	2410	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	37	0	-6	0	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	724	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAGTTAGCCAGTCACA	6113	False	NA	NA	False	NA	NA	NA	181007160	180999625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
27414	chr16	-	3486	16	NNC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	1147	0	intron_retention	TRUE	canonical	2	15	junction_15	117.179330752294	341	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	NA	False	NA	NA	NA	20194245	20150052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20194136
27415	chr15	-	2861	13	NIC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	12	-2	intron_retention	FALSE	canonical	3	165	junction_11	30.2002575412124	260	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATTTACTAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	89239850	89235347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89239021_89239558
27416	chr5	-	2410	7	ISM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	9820	3	-468	-3	3prime_fragment	FALSE	canonical	3	487	junction_1	43.3605683644586	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTGTCTGGTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	92573258	92563401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132
27417	chrX	-	2702	5	NNC	ENSMUSG00000036782.14	novel	3349	7	NA	NA	18566	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	450.520254816584	1	100	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23114475	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113745_23114396
27418	chr6	-	3517	12	FSM	ENSMUSG00000029790.17	ENSMUST00000140211.8	3522	12	5	0	5	0	multi-exon	FALSE	canonical	0	0	junction_7	34.0944240612173	7	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTCGTTTGCTATTAA	20	True	NA	NA	False	NA	NA	NA	30693687	30653457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30661721_30661855_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
27419	chr9	-	3383	8	NIC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	0	-98	intron_retention	FALSE	canonical	3	1324	junction_2	72.3181745299682	8	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCCTGTGTATGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	70328829	70315071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
27421	chr14	+	3476	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	47	-1404	-21	-1244	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	400	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTACCGGATCAATTACAA	NA	False	NA	NA	False	NA	NA	NA	29700340	29716580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
27423	chr7	-	2007	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	621.456675883364	71	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002321	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995218_98995261_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
27424	chr9	+	2860	22	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	298.934555514624	1	87	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	98445810	98470435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464866_98464917_98464951_98467035_98467147_98467984_98468194_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470113
27425	chr1	+	2548	2	ISM	ENSMUSG00000026142.16	ENSMUST00000140020.2	3687	7	38612	0	38612	0	3prime_fragment	FALSE	canonical	3	189	junction_1	0	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	NA	False	NA	NA	NA	82355381	82423087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_82355426_82420583
27426	chr15	-	2650	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-30	345	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	759.681668631224	1	107	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	NA	False	NA	NA	False	NA	NA	NA	11399717	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387903_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
27427	chr1	+	2216	10	NIC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	-8	0	intron_retention	FALSE	canonical	3	624	junction_3	44.3524046977065	20	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	42890427	42944843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42938710_42942454_42942625_42944564
27429	chr1	-	3889	14	NIC	ENSMUSG00000089872.11	novel	3995	15	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	11.9782840983518	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTTCCTCATTTAAT	NA	False	NA	NA	False	NA	NA	NA	190643955	190505076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
27430	chr3	-	2299	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	58	33	58	0	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	848	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	96634886	96618838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
27432	chr10	-	4344	3	FSM	ENSMUSG00000019763.12	ENSMUST00000156940.8	1772	3	10	-2582	0	2582	multi-exon	FALSE	canonical	3	145	junction_2	8	86	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCAAACTTTTTGTCTGA	5716	False	NA	NA	False	NA	NA	NA	4382334	4373511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_4377692_4379076_4379172_4382265
27433	chr10	+	2432	12	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	-7	4	intron_retention	FALSE	canonical	3	604	junction_6	39.5641544083731	8	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAGTTTCAAAATATTCT	9190	False	NA	NA	False	NA	NA	NA	127102229	127117823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
27434	chr8	-	1774	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	20	-237	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	430.078408548953	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCTCCTTCTCTGGGA	NA	False	NA	NA	False	NA	NA	NA	85573435	85568715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569617_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
27435	chr12	+	2475	13	NNC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_10	85.8433651095606	16	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCACCTCTTTGGCTCTT	1849	False	NA	NA	False	NA	NA	NA	84363891	84390492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378537_84379708_84379799_84384389_84384516_84385415_84385557_84385824_84386028_84386875_84387004_84389768
27436	chr6	+	1782	9	NNC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	187.231641289607	94	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	NA	False	NA	NA	NA	82923902	83007163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003385_83006750
27437	chr5	+	2860	17	NNC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	73.7821698904959	8	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7982	False	NA	NA	False	NA	NA	NA	3853180	3891359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882185_3886854_3886895_3890873
27438	chr4	-	2121	14	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	20	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	112.541379635126	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGCTTCTTTGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	149251144	149234450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235028_149235101_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
27439	chr4	+	2398	9	ISM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	49	2	-13	-2	intron_retention	FALSE	canonical	3	1067	junction_7	52.6045090747932	12	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAAAAACCTTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	130253973	130283817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367
27441	chr9	-	3019	6	FSM	ENSMUSG00000040722.8	ENSMUST00000215734.2	675	6	28	-2372	-13	0	multi-exon	FALSE	canonical	3	101	junction_3	25.4715527598927	161	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	NA	False	NA	NA	NA	57375292	57348609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375215
27442	chr13	-	1561	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	28	-479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	2	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTAACGGTGTCCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	34314309	34311209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311847_34311960_34312515_34312854_34312966_34313228_34313338_34314159
27444	chr17	-	3405	3	Antisense	novelGene_ENSMUSG00000007038.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGGCCCTTTAAAAGCGCG	8735	False	NA	NA	False	NA	NA	NA	35154287	35150326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35151084_35151540_35153482_35153580
27445	chrX	-	2049	9	NNC	ENSMUSG00000016534.16	novel	1769	9	NA	NA	-23666	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	396.882775514383	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTGTTTCAATTTGT	NA	False	NA	NA	False	NA	NA	NA	37568997	37493940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37568509
27446	chr19	+	2851	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	-106	8	-106	-8	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	323	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGACATTTAATGTTCTT	1251	False	NA	NA	False	NA	NA	NA	8931104	8943566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
27448	chr5	-	3808	16	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	3	27	junction_15	19.0349386363311	89	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGTCTGTGGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	77053325	77023783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
27449	chrX	-	1660	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642027	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135633835_135633969_135635251_135636294_135636372_135640553_135640644_135641958
27450	chr7	-	1788	8	NIC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_2	1057.8876141073	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	16121768	16060974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16061855_16064537_16064608_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
27451	chr11	+	1780	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	46	274	2	-274	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	2	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAAATATATCATGCCTC	3037	False	NA	NA	False	NA	NA	NA	75623740	75656397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
27452	chr6	-	1467	6	NIC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-125	intron_retention	FALSE	canonical	3	1828	junction_2	42.5938962763446	136	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTTGTGGGTTGTCATA	NA	False	NA	NA	False	NA	NA	NA	124791121	124787679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
27453	chr16	-	1809	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1155.52135825133	1	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTCGCTGTACTGTTGG	1051	False	NA	NA	False	NA	NA	NA	11021098	11010837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019268_11020189_11020322_11021014
27454	chr11	-	3030	13	FSM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	15	-181	15	181	multi-exon	FALSE	canonical	3	46	junction_9	15.1867998238236	154	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGACAAAAATGTGTACTA	NA	False	NA	NA	False	NA	NA	NA	121563964	121506841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
27455	chr3	+	4907	5	FSM	ENSMUSG00000050192.9	ENSMUST00000060500.9	5027	5	116	4	116	-4	multi-exon	FALSE	canonical	3	73	junction_1	7.24568837309472	67	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATATGTGTATGTTCTTA	NA	False	NA	NA	False	NA	NA	NA	28835540	28852991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_28835563_28836164_28836366_28836876_28836982_28847833_28847966_28848544
27456	chr1	-	1333	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	67	1440	16	-56	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	10	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGGCATCGACTCCTATG	NA	False	NA	NA	False	NA	NA	NA	75195871	75192311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
27457	chr1	-	2449	19	NNC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	4399	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	329.680822075602	1	63	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACTGATATTAAAGTGT	2892	False	NA	NA	False	NA	NA	NA	63211423	63182759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186348_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63203986_63204118_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210039_63210074_63211312
27458	chr14	-	2020	9	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5085	-24	intron_retention	FALSE	canonical	3	329	junction_5	30.347981810987	20	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATAAATGCTTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	59608004	59586204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
27459	chr11	-	2516	12	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	-1	421	combination_of_known_splicesites	TRUE	canonical	2	7	junction_9	47.5345894069008	328	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTTTGTGAGTACAT	NA	False	NA	NA	False	NA	NA	NA	106084366	106053734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106075387_106075446_106077926_106078007_106084291
27460	chr5	-	2283	4	FSM	ENSMUSG00000105987.5	ENSMUST00000198984.5	345	4	-2	-1936	2	4	multi-exon	FALSE	canonical	2	2	junction_3	6.68331255192114	548	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTAGTCTGAGGTCTTCTT	5259	False	NA	NA	False	NA	NA	NA	23917662	23903289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_23905472_23915363_23915407_23916113_23916149_23917639
27461	chr8	+	2501	7	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	197	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	97.1129067975347	381	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	47070673	47092724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47070785_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
27462	chr2	-	2615	8	Antisense	novelGene_ENSMUSG00000026662.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGGTACCACCAAAACATA	NA	False	NA	NA	False	NA	NA	NA	4913027	4889142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_4889422_4894064_4894097_4896396_4896505_4897994_4898151_4901499_4901591_4904274_4904372_4910279_4910493_4911388
27463	chr15	-	3848	12	FSM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	-48	-1054	-48	3	multi-exon	FALSE	canonical	3	77	junction_7	8.71021059418435	168	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTGGATTTGAGTTCCT	1626	False	NA	NA	False	NA	NA	NA	100618406	100589690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618287
27465	chr2	+	1713	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	198	0	198	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	81	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143757437	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
27466	chr6	+	2222	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	54	7	7	-7	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	2	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCATTCTTTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	106746180	106759428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
27467	chr13	+	2356	11	FSM	ENSMUSG00000025451.16	ENSMUST00000026520.14	2551	11	182	13	-15	-13	multi-exon	FALSE	canonical	3	177	junction_1	70.3985795311241	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTTTTAAAATGGTATC	NA	False	NA	NA	False	NA	NA	NA	119565639	119594741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_119565697_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
27468	chr11	-	3219	14	NIC	ENSMUSG00000032633.13	novel	3437	13	NA	NA	-3	40	combination_of_known_junctions	FALSE	canonical	3	19	junction_12	92.1306635794925	150	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCGACTACATGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	59700845	59682575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700190_59700312_59700485
27469	chr6	-	6936	22	NNC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	43	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	10.321366781822	27	112	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATACTATGCAATGGTT	NA	False	NA	NA	False	NA	NA	NA	113868288	113722638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819604_113868213
27470	chr3	-	1803	1	Intergenic	novelGene_3100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACTGAAATAAAAAAAATAT	NA	False	NA	NA	False	NA	NA	NA	37505364	37503561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_37503600_37505400
27471	chr3	-	2532	10	Antisense	novelGene_ENSMUSG00000027722.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAAGACATGACCGCAGG	NA	False	NA	NA	False	NA	NA	NA	37503384	37474500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_37474648_37478657_37478783_37480235_37480391_37484188_37484250_37485777_37486426_37487285_37487417_37487787_37487844_37490789_37490915_37493249_37493504_37502554
27472	chr16	-	2284	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	3	582	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	816.104583590868	1	90	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGTTGGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	22084673	22064615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065935_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
27473	chr5	+	2073	4	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-5	1	intron_retention	FALSE	canonical	3	15457	junction_2	791.72399792408	16	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121343466	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121343727_121343816_121345259_121346453_121346639_121346844
27474	chr16	+	3112	18	NIC	ENSMUSG00000005899.15	novel	4532	19	NA	NA	-1	152	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	64.5519023490851	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCTGGGCTGAATCTT	NA	False	NA	NA	False	NA	NA	NA	17437225	17461363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17437299_17439305_17439390_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
27476	chr7	-	3302	6	NNC	ENSMUSG00000030641.11	novel	3387	6	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	83.7448505879615	3	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTTTTGTTATAATTT	NA	False	NA	NA	False	NA	NA	NA	92523403	92506732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_92509521_92510607_92510726_92511532_92511695_92515811_92515908_92521969_92522053_92523348
27477	chrX	+	2231	19	FSM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	-49	1171	-22	18	multi-exon	FALSE	canonical	2	133	junction_1	30.7828415409191	363	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTTGTGTTTTCTCCA	NA	False	NA	NA	False	NA	NA	NA	161684578	161814333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
27478	chr10	+	4618	22	NNC	ENSMUSG00000040033.17	novel	4394	24	NA	NA	0	-6	intron_retention	FALSE	non_canonical	0	0	junction_7	28.7346133528041	1	135	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAACAAAGATACTGTGAG	2361	False	NA	NA	False	NA	NA	NA	128106427	128128712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128106587_128112354_128112493_128112616_128112768_128112991_128113088_128113512_128113603_128113690_128113767_128114153_128114240_128114532_128114687_128116950_128117110_128117218_128117312_128117517_128117601_128118580_128118675_128118981_128119027_128119101_128119186_128119352_128119452_128119552_128119849_128119966_128120062_128120796_128121033_128121140_128121324_128121529_128121588_128126372_128126900_128127096
27479	chr11	+	2661	5	Antisense	novelGene_ENSMUSG00000020303.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGCTCTGGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	31307931	31320108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_31309208_31309895_31310528_31315330_31315543_31317724_31317869_31319711
27480	chr9	-	3481	3	FSM	ENSMUSG00000048503.8	ENSMUST00000061833.6	3503	3	11	11	11	-11	multi-exon	FALSE	canonical	3	19	junction_1	3	90	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACCCAGAGTCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	43027854	43019955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_43023154_43024755_43024956_43027771
27481	chr8	+	1433	1	Antisense	novelGene_ENSMUSG00000037251.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGATGGCTCATTTTTAC	NA	False	NA	NA	False	NA	NA	NA	26471452	26472885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_26471500_26472900
27484	chr16	+	1938	12	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-122	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	717.242930594372	1	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTAAGTGTGAACTGGAC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930723_22931100_22931208_22931916
27486	chr17	-	2038	16	NNC	ENSMUSG00000024056.11	novel	2201	17	NA	NA	20	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	97.5784584606436	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGTGAGTGTCCCCTCC	NA	False	NA	NA	False	NA	NA	NA	71833832	71803102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818464_71821190_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
27487	chrX	+	2543	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	19	0	-4	0	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	22	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTCAGACTCCACTTGT	556	False	NA	NA	False	NA	NA	NA	74426023	74440065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
27488	SIRV3	+	1610	4	NNC	SIRV3A	novel	2018	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1962	7822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2006_4567_4780_6060_6113_6519
27489	chr3	-	5060	14	NIC	ENSMUSG00000028078.15	novel	4908	15	NA	NA	2	-18	intron_retention	FALSE	canonical	3	33	junction_1	65.5733926412627	4	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTCTTCCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	86827684	86693483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86694720_86699375_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
27490	chr14	+	2200	5	ISM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	2662	18	2649	-18	3prime_fragment	FALSE	canonical	3	317	junction_4	18.0138835346518	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGGTTTTGTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	73750126	73755967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
27491	chr11	-	1994	5	NNC	ENSMUSG00000038615.18	novel	486	4	NA	NA	0	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	600.382534306254	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCTGCCTACCAACACC	NA	False	NA	NA	False	NA	NA	NA	96714834	96709053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96709198_96709931_96711343_96712076_96712236_96712929_96713146_96714770
27492	chr2	-	2450	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	8	0	-8	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	461	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCAGCCTGTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	164285106	164266174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
27493	chr2	+	2579	12	NNC	ENSMUSG00000027259.16	novel	2298	10	NA	NA	233	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_1	42.0699928395604	40	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120971234	120987159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120971364_120971717_120971803_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
27494	chr11	+	739	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	15	227	15	-227	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	13638	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAGTTTTTTAACACGT	NA	False	NA	NA	False	NA	NA	NA	72098387	72100614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
27495	chr5	-	2408	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	83	269	14	-1	multi-exon	FALSE	canonical	3	1165	junction_8	284.126264845403	3	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGAAGTGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	122959319	122925790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
27496	chr9	+	2333	16	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	143.370134810411	6	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGGGGGTCCTGTCAT	NA	False	NA	NA	False	NA	NA	NA	114230168	114303442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114293981_114294117_114302905
27497	chr5	-	3020	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	8	-127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	1	127	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTTTCGCTAAGGAATTA	NA	False	NA	NA	False	NA	NA	NA	135963462	135937389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938075_135938456_135940506_135963176
27498	chr14	-	2935	21	NIC	ENSMUSG00000022020.16	novel	13223	20	NA	NA	-16	7	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	55.2484388919723	244	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGTTTGTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	79628148	79573068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588128_79588271_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
27499	chr2	+	2611	10	NNC	ENSMUSG00000027397.15	novel	3219	10	NA	NA	577	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	185.879756699371	1	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTGCTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	129041806	129053535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_129041985_129042102_129042244_129042419_129042469_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
27500	chrX	+	1464	5	NIC	ENSMUSG00000008682.14	novel	762	6	NA	NA	0	-5	intron_retention	FALSE	canonical	3	2920	junction_1	2870.35908032427	100	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTTTTTGTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	73314462	73316736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73314481_73314584_73315325_73315405_73315514_73315784_73315924_73316277
27501	chr8	+	2507	8	NIC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	11	0	intron_retention	FALSE	canonical	0	0	junction_1	479.613790205309	25	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTTTCTAGGCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	70980422	70987977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70985400_70986766_70986845_70987132_70987265_70987516
27503	chr5	+	4101	19	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	1	-716	intron_retention	FALSE	canonical	3	110	junction_9	215.964760499897	259	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTTCAACAAAAGGACTT	NA	False	NA	NA	False	NA	NA	NA	74696142	74758735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
27504	chr3	-	1960	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	4	44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	822.986050914595	2	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTGGGTCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	108352521	108333883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108339023_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
27505	chr10	-	1746	9	NIC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-10	4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	902.57845053768	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACATTTTAATGTGTATG	NA	False	NA	NA	False	NA	NA	NA	93725656	93696785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_93697465_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722961_93725399
27506	chr9	+	2339	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	1	0	1	0	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	597	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGCCCTGATGTCAAT	NA	False	NA	NA	False	NA	NA	NA	57468226	57496078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
27507	chr18	+	4782	15	NIC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	6	2	intron_retention	FALSE	canonical	3	24	junction_10	20.3414726655688	2	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATGTTAGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	74401251	74414307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749
27508	chr18	-	1424	4	Intergenic	novelGene_4530	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCCGCCGCCTCCCTTCT	NA	False	NA	NA	False	NA	NA	NA	35750239	35731720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_35731812_35743922_35744088_35746375_35746555_35749250
27509	chr9	-	2866	7	NIC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	20136	-28	intron_retention	FALSE	canonical	3	184	junction_3	17.2086864370552	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGGAAACCATTAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	27017710	27008707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27012737_27013159_27013313_27016802_27016917_27017644
27510	chr3	-	2301	16	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-2	2	intron_retention	FALSE	canonical	1	19	junction_7	170.748105569449	7	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662197	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658297_95658817_95658943_95660318_95660443_95661683_95661828_95662069
27512	chr8	+	2741	12	NNC	ENSMUSG00000070002.8	novel	3072	12	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	42.980872163101	13	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGTGGTTTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	70992344	71045508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038527_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
27513	chrX	-	3464	13	NNC	ENSMUSG00000040363.16	novel	6839	15	NA	NA	22739	-1019	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	53.3720562550188	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTGGAAGCCTTCAATC	NA	False	NA	NA	False	NA	NA	NA	11924053	11904000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11923878_11923914
27515	chr12	-	2797	10	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	14	0	intron_retention	FALSE	canonical	0	0	junction_4	607.288326177205	1	110	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860086	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833683_108841034_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
27516	chr17	-	2152	6	NIC	ENSMUSG00000024150.13	novel	2017	5	NA	NA	-9	-6	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	140.124230595568	602	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAGCAGCTGTTGACGT	NA	False	NA	NA	False	NA	NA	NA	87573341	87562091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87571568_87571794_87573262
27517	chr8	+	2070	5	NIC	ENSMUSG00000031485.16	novel	5767	5	NA	NA	-11	-539	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	108.51353602201	7	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGCAAGGCAACATCTC	NA	False	NA	NA	False	NA	NA	NA	27532638	27540824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535827_27536028_27539201
27519	chr11	+	3510	10	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	0	-4	intron_retention	FALSE	canonical	3	62	junction_2	34.7139990262583	14	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCACTTTGTGATTGAG	NA	False	NA	NA	False	NA	NA	NA	51154012	51172587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51157997_51158159_51162626_51164454_51166037_51166155_51166238_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
27521	chr4	+	1488	10	NIC	ENSMUSG00000054405.15	novel	1401	9	NA	NA	-6	-11	combination_of_known_junctions	FALSE	canonical	3	7	junction_8	1298.89284287964	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAAGCCTTTGATGGTCT	2342	False	NA	NA	False	NA	NA	NA	132262871	132281042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132279351_132279461_132280327
27523	chr17	+	1824	7	Antisense	novelGene_ENSMUSG00000024097.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	123	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCCCGTGTACTCGGCT	NA	False	NA	NA	False	NA	NA	NA	80508738	80514635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_80509032_80509597_80509636_80510121_80510174_80511559_80511660_80511739_80512868_80513276_80513460_80514605
27524	chr14	+	5145	12	FSM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	0	-4	0	4	multi-exon	FALSE	canonical	3	143	junction_10	14.8340684499182	114	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGCTTCTTATTCATG	2329	False	NA	NA	False	NA	NA	NA	119175387	119219113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_119175583_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543_119212677_119214121_119214271_119215438
27525	chr6	-	2469	11	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43536	-264	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCACCGGCACCACTGC	NA	False	NA	NA	False	NA	NA	NA	71852230	71808332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808438_71823145_71823460_71828757_71828868_71833900_71834031_71837984_71838089_71839326_71839463_71840122_71840258_71845544_71845786_71848408_71848540_71849774_71849908_71851300
27527	chr12	-	1985	7	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	719.225374197052	13	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTCTGTCACTGTCT	NA	False	NA	NA	False	NA	NA	NA	108860071	108825964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827090_108841055_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
27528	chr2	+	940	1	NIC	ENSMUSG00000039515.12	novel	1040	5	NA	NA	-735	-916	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGCAAGCCAGTAACAGG	NA	False	NA	NA	False	NA	NA	NA	30334932	30335872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30334900_30335900
27529	chr17	-	2016	14	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	677.502103754458	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATAGCTCTGTGCATC	NA	False	NA	NA	False	NA	NA	NA	45906428	45896133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898236_45898483_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
27530	chr15	-	1378	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1500	2	1373	-2	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	1531	False	NA	NA	False	NA	NA	NA	98830946	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
27531	chr6	+	2947	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	62	0	62	0	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	742	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	NA	False	NA	NA	NA	56809105	56856343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
27532	chr6	-	1449	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	93	8	50	-1	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCATTTTCTGACTAA	NA	False	NA	NA	False	NA	NA	NA	33037102	32769159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
27533	chr15	+	1559	4	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2882	-5029	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGAGGCGCCCGCTCC	NA	False	NA	NA	False	NA	NA	NA	98829323	98832314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98830402_98830570_98830718_98830844_98831079_98832214
27534	chr11	+	2574	10	NIC	ENSMUSG00000057522.16	novel	3063	10	NA	NA	19	-395	intron_retention	FALSE	canonical	3	26	junction_3	78.3794190673377	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGTGTGGTATCTCTGG	NA	False	NA	NA	False	NA	NA	NA	95304942	95383837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_95305231_95361347_95361492_95362048_95362171_95365131_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
27535	chr3	-	1819	12	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-13	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	282.772402127504	6	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTGACTCTCCAGGT	144	False	NA	NA	False	NA	NA	NA	153650117	153627992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628640_153631301_153631530_153635223_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
27537	chr17	-	1337	12	NNC	ENSMUSG00000015659.13	novel	4007	17	NA	NA	2	-1698	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	23.9707121571787	10	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATGAAGACAGGTACACT	2603	False	NA	NA	False	NA	NA	NA	6130006	6101999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6102057_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
27541	chr10	-	3007	6	FSM	ENSMUSG00000025358.17	ENSMUST00000219099.2	2971	6	-37	1	-37	-1	multi-exon	FALSE	canonical	3	439	junction_2	293.827160078846	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTAGAGTGAATCTCTT	8210	False	NA	NA	False	NA	NA	NA	128540937	128533813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794
27542	chr14	+	4316	15	Antisense	novelGene_ENSMUSG00000048922.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	103	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACGCCCCCGCGGAGGG	NA	False	NA	NA	False	NA	NA	NA	67913074	67952861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_67915469_67917607_67917779_67931073_67931206_67932414_67932499_67934114_67934167_67935382_67935618_67936134_67936205_67937630_67937863_67941415_67941486_67943074_67943247_67944801_67944952_67950538_67950691_67952130_67952311_67952410_67952457_67952685
27543	chr12	-	2285	7	Antisense	novelGene_ENSMUSG00000021134.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTAGCAGCTCGGACGT	NA	False	NA	NA	False	NA	NA	NA	80997265	80992307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_80992444_80993347_80993494_80994083_80994154_80994267_80994368_80994568_80995330_80995868_80995942_80996266
27544	chr4	-	1623	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	-3	6	-3	-6	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	4487	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCAGTCCTCGGTCATC	NA	False	NA	NA	False	NA	NA	NA	124830713	124812263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
27546	chrX	-	2064	5	NIC	ENSMUSG00000031167.17	novel	1274	6	NA	NA	8	1	intron_retention	FALSE	canonical	3	764	junction_2	225.122744297417	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATCAATACTGATAATGC	6544	False	NA	NA	False	NA	NA	NA	8011953	8008605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8011312_8011876
27549	chr12	+	2443	3	ISM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	2737	946	2657	-946	3prime_fragment	FALSE	canonical	3	465	junction_2	21.5	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACATCCTTTGTCATCTT	NA	False	NA	NA	False	NA	NA	NA	59116406	59119838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_59117084_59117164_59117304_59118211
27550	chr16	-	2644	5	NNC	ENSMUSG00000065979.13	novel	2663	4	NA	NA	0	33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	40.9595837381192	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCTGTGCTGTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	11727286	11621551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11623156_11623206_11623448_11646038_11646462_11705441_11705661_11727129
27552	chr17	+	1939	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	732.756136484407	4	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	29251646	29261871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357_29260744_29260901
27553	chr7	+	2107	8	NNC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	365.906255419475	2	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCCTCTGTAGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	43896210	43901731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896233_43896674_43896841_43897436_43897488_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
27555	chr16	+	4709	17	ISM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	5647	4	-665	0	3prime_fragment	FALSE	canonical	3	399	junction_7	20.8033012704715	1	230	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTTGTCGGACTCATTT	2085	False	NA	NA	False	NA	NA	NA	32433384	32451608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
27557	chr7	-	1741	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	88	342	0	-342	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGGAACAACTCCTTAAC	NA	False	NA	NA	False	NA	NA	NA	117728797	117718455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
27558	chr19	+	2920	11	FSM	ENSMUSG00000025212.18	ENSMUST00000062213.13	2867	11	-55	2	43	-2	multi-exon	TRUE	canonical	3	75	junction_2	13.7767920794356	170	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTGATCTTCAGTTATT	NA	False	NA	NA	False	NA	NA	NA	45036057	45044819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_45036330_45037542_45037707_45038182_45038354_45038666_45038766_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
27559	chr11	+	1914	12	NNC	ENSMUSG00000059552.14	novel	1867	11	NA	NA	1	-11	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	867.467826349811	34	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCACTTATATGGTTT	NA	False	NA	NA	False	NA	NA	NA	69471228	69482687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69471879_69471982_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
27560	chr9	+	2462	17	Antisense	novelGene_ENSMUSG00000032116.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAAATACCTAAAATGGA	NA	False	NA	NA	False	NA	NA	NA	36643887	36676466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_36644257_36645608_36645727_36646648_36646838_36652784_36652886_36653010_36653126_36654710_36654898_36655288_36655423_36657821_36657940_36659218_36659320_36660813_36661030_36662477_36662645_36663626_36663730_36666098_36666192_36670016_36670162_36670496_36670617_36674624_36674694_36676349
27561	chr17	-	1054	1	NIC	ENSMUSG00000063576.13	novel	2100	12	NA	NA	171	-1457	mono-exon	FALSE	NA	NA	NA	NA	NA	4	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGACACCCTGGGTGACC	NA	False	NA	NA	False	NA	NA	NA	46991121	46990067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46990100_46991100
27562	chr17	-	1982	10	ISM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	2169	4	1631	-1	3prime_fragment	FALSE	canonical	3	376	junction_8	32.5238753708073	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACGTGTCCTATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	46989661	46985479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206
27563	chr1	+	3802	5	NNC	ENSMUSG00000036206.13	novel	4995	6	NA	NA	63186	-1258	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	47.2566132938026	87	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCTTTTCAAATTATGT	NA	False	NA	NA	False	NA	NA	NA	89061360	89081532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_89061688_89065280_89065526_89071271_89073629_89079921_89080111_89080848
27564	chr14	+	1125	1	NIC	ENSMUSG00000022033.10	novel	1720	8	NA	NA	6991	473	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCATGGTGGTACACAC	5707	False	NA	NA	False	NA	NA	NA	66050671	66051796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_66050700_66051800
27568	SIRV7	-	2152	6	NNC	SIRV7A	novel	2462	5	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	769.2	4	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	147906	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1510_1752_2676_2998_3112_43028_43070_114680_114989_147643
27569	chr18	+	3401	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	133	8	34	-8	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	306	126	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGAATCTGTTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	67908078	67928549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
27571	chr6	+	180	2	ISM	ENSMUSG00000068328.11	ENSMUST00000203749.2	545	3	124	344	124	-55	5prime_fragment	FALSE	canonical	3	960	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGTCAGGAGAGCCTGCA	1145	False	NA	NA	False	NA	NA	NA	83033957	83034319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83034075_83034256
27572	chr13	+	3254	16	NIC	ENSMUSG00000035493.11	novel	2714	17	NA	NA	3	-5	intron_retention	FALSE	canonical	3	51	junction_1	6.70124366566883	3	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACCTGTGTGCTAGCT	9428	False	NA	NA	False	NA	NA	NA	56757401	56787166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
27573	chr19	+	1310	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	71	-297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3043.11117269399	8	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	2089	False	NA	NA	False	NA	NA	NA	8945650	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8945739_8946525_8946590_8946727_8946862_8947199_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
27574	chr10	+	3425	1	Genic_Genomic	ENSMUSG00000019923.15	novel	NA	NA	NA	NA	11445	1324	mono-exon	FALSE	NA	NA	NA	NA	NA	19	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCTATGTGAAGGTGAA	NA	False	NA	NA	False	NA	NA	NA	72503520	72506945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_72503500_72506900
27575	chr16	-	3276	9	NIC	ENSMUSG00000004462.8	novel	2803	8	NA	NA	65	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	48.0670105165695	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGCCAGAGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	22676225	22631963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22632707_22633557_22633635_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
27576	chr2	-	4478	24	NNC	ENSMUSG00000027185.16	novel	3497	27	NA	NA	2	-53	intron_retention	FALSE	non_canonical	0	0	junction_5	75.8733647983422	1	254	16	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAGTTTTGAGCAAAGC	NA	False	NA	NA	False	NA	NA	NA	103591538	103554589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103554621_103555433_103556585_103557060_103557234_103558147_103558259_103558344_103558491_103560859_103560989_103561651_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
27578	chr4	+	1532	10	NIC	ENSMUSG00000054405.15	novel	1401	9	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	1257.77332154688	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGATGGTCTCCTCCT	2359	False	NA	NA	False	NA	NA	NA	132262888	132281048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132262975_132263293_132263458_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
27579	chr11	+	2674	6	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	61	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTCCTCCACCCCACAAC	NA	False	NA	NA	False	NA	NA	NA	106580462	106615262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106582017_106586586_106586856_106587877_106588180_106590416_106590705_106605816_106606013_106615197
27580	chr10	-	1983	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	-17	-2	-14	0	multi-exon	FALSE	canonical	3	688	junction_11	105.465203223192	1811	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTCTGCTTCCTGTGT	4755	False	NA	NA	False	NA	NA	NA	80896029	80879908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
27581	chr17	+	2326	11	NIC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	256	junction_2	25.4283306569661	378	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9244	False	NA	NA	False	NA	NA	NA	57071777	57076841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
27582	chr12	+	2903	3	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	52	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	114	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516942	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517238_86565591_86565907_86566103
27584	chr8	+	2419	17	NNC	ENSMUSG00000031864.17	novel	4201	17	NA	NA	1	160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	173.689906424495	1	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTTTTAGTTTCAAGTA	NA	False	NA	NA	False	NA	NA	NA	69246608	69280313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260279_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
27586	chrX	+	3415	3	NIC	ENSMUSG00000046774.18	novel	1940	6	NA	NA	-46	-9	intron_retention	FALSE	canonical	3	266	junction_1	8.5	10	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTACTTCACAGCTGTA	NA	False	NA	NA	False	NA	NA	NA	100838215	100842235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100840444_100840965_100841990_100842072
27587	chr1	-	2519	19	NNC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	104	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	368.567580951438	1	77	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGATATTAAAGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	63215718	63182756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183069_63186274_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195487_63196290_63196437_63198908_63199024_63200038_63200170_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209292_63210015_63210074_63215586
27588	chr13	-	2734	8	NNC	ENSMUSG00000035834.12	novel	3054	8	NA	NA	18	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	129.940645790959	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGATTTGCAGTGAACAT	NA	False	NA	NA	False	NA	NA	NA	81859046	81821960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81823341_81823421_81824242_81826234_81826379_81830230_81830314_81835248_81835296_81837315_81837376_81842766_81842897_81858976
27590	chr15	+	3167	25	NNC	ENSMUSG00000022142.9	novel	4391	34	NA	NA	116	404	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	54.6849404162913	2	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGGGCTGGTGAGATGG	NA	False	NA	NA	False	NA	NA	NA	8138935	8174460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146_8164210_8165241_8165390_8166116_8166184_8167337_8167454_8169334_8169433_8170712_8170844_8172451_8172644_8173534_8174018_8174398
27591	chr4	-	3761	24	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	265.323385804607	1	166	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATTCTTGGTCTCCGT	2	True	NA	NA	False	NA	NA	NA	41275102	41194320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205608_41205679_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216647_41233603_41233715_41235516_41235595_41251534_41251672_41275039
27592	chr13	+	3194	21	NNC	ENSMUSG00000021314.14	novel	3224	21	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	16.7582815348114	1	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGTTCTTTTTCAAGAG	NA	False	NA	NA	False	NA	NA	NA	19132581	19335089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278898_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305502_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
27593	chr16	-	1889	3	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	-12	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45973767_45973860_45974003_45974100
27594	chr15	+	3650	4	NIC	ENSMUSG00000023051.12	novel	1819	7	NA	NA	415	-2	intron_retention	FALSE	canonical	3	368	junction_3	15.9652400197707	2	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACCCCTTGTTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	102427651	102432107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102430232_102430415_102430534_102430858_102430987_102431283
27595	chr3	+	1467	14	NIC	ENSMUSG00000040213.14	novel	4206	14	NA	NA	0	-2657	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	41.7474798162226	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCGGTTTTGCTTTATTA	NA	False	NA	NA	False	NA	NA	NA	142406840	142444050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_142406937_142412449_142412557_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436386_142436470_142436962_142437053_142440234_142440422_142443532_142443607_142443985
27596	chr6	+	1995	9	NIC	ENSMUSG00000068328.11	novel	1265	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	960	junction_7	76.8007771770573	674	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5421	False	NA	NA	False	NA	NA	NA	83031709	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
27597	chr15	-	3293	23	Antisense	novelGene_ENSMUSG00000023007.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	23	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCAACCGGCCCGGTGTG	NA	False	NA	NA	False	NA	NA	NA	99214895	99193001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_99193153_99201161_99201245_99201921_99202070_99202309_99202430_99203414_99203531_99203829_99203963_99204267_99204478_99204682_99204816_99204894_99204953_99205432_99205601_99205700_99205810_99206069_99206223_99206943_99207075_99207562_99207680_99207823_99207915_99212456_99212576_99212723_99212860_99213069_99213166_99213361_99213451_99213603_99213780_99213965_99214028_99214121_99214260_99214339
27598	chr7	+	1523	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	61	4	30	-3	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	3	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGGCTCTGCTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	46495323	46505047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
27601	chr18	-	1699	2	ISM	ENSMUSG00000036223.17	ENSMUST00000237276.2	1256	6	-19	8880	13	-8880	5prime_fragment	FALSE	canonical	3	429	junction_1	0	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATTCCCAAAGCGAGCTG	6778	False	NA	NA	False	NA	NA	NA	74340837	74338429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_74339956_74340664
27602	chr6	-	2799	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	2	3	0	-2	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	1	109	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAACTGTGTCTATTACT	NA	False	NA	NA	False	NA	NA	NA	72416539	72409784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
27603	chr18	+	1826	20	NNC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	215.390722722459	8	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	NA	False	NA	NA	NA	36877724	36890688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881644_36881945_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
27605	chr5	-	2533	5	Antisense	novelGene_ENSMUSG00000023104.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	59	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTCACAGAGTGAAGGA	4613	False	NA	NA	False	NA	NA	NA	134627173	134620463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_134622197_134623058_134623127_134624070_134624216_134625733_134625848_134626700
27606	chr19	+	1803	11	NNC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-3	-2	at_least_one_novel_splicesite	TRUE	canonical	1	7	junction_4	185.417070411545	16	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGTTTGACCTACTGTT	3607	False	NA	NA	False	NA	NA	NA	4198649	4204030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200480_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
27608	chr10	-	3064	11	NNC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	-31	-8	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_1	114.041264461597	1	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTCATTCACAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	127047485	127032943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127034618_127034913_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
27609	chr17	-	1789	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	194	5	194	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTTTG	NA	False	NA	NA	False	NA	NA	NA	90217683	90215894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_90215900_90217700
27610	chr11	-	2941	8	FSM	ENSMUSG00000017802.15	ENSMUST00000107295.10	3179	8	43	195	-35	-4	multi-exon	FALSE	canonical	3	12	junction_5	32.1222155944119	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTGCTGTTTCGTTGTG	9888	False	NA	NA	False	NA	NA	NA	101010626	100987342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100994715_100994747_100997132_100997240_101010366
27611	chr5	+	1565	9	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	-33	-4	combination_of_known_splicesites	FALSE	canonical	3	18	junction_8	455.54773007337	41	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGAGGTGTTCTATTCC	5374	False	NA	NA	False	NA	NA	NA	100666275	100695665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100695169
27612	chr13	-	2375	7	NNC	ENSMUSG00000025871.19	novel	2502	8	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	197.418056136942	21	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGCCCAGGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	54713169	54699040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707142_54712327_54712435_54712994
27613	chr7	+	3036	22	NIC	ENSMUSG00000030534.14	novel	2574	23	NA	NA	-6	3	intron_retention	FALSE	canonical	3	97	junction_6	14.7824741484676	190	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTTTGTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79919420	79941324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
27614	chr7	+	2375	8	NIC	ENSMUSG00000066979.7	novel	2128	9	NA	NA	-7	0	intron_retention	FALSE	canonical	3	50	junction_3	468.661446057181	6	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTTTTAAAAGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	131162101	131172893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
27615	chr14	-	2617	16	NIC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-5	-10	intron_retention	FALSE	canonical	3	685	junction_13	61.4312262253942	1	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	4854	False	NA	NA	False	NA	NA	NA	54754823	54744653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
27617	chr6	+	3127	18	NIC	ENSMUSG00000029629.18	novel	727	6	NA	NA	34	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_1	28.9182118357714	93	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGTATTTGAAATTCATA	-22	True	NA	NA	False	NA	NA	NA	11907841	12081197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_11908017_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
27618	chr6	+	1779	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-13	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1771.26644238448	3	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5175	False	NA	NA	False	NA	NA	NA	85429060	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444763_85445034
27619	chr7	+	1867	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	271	2354	-59	1098	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGATAGGTATATTCTG	NA	False	NA	NA	False	NA	NA	NA	83541478	83548386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
27620	chr16	-	1890	10	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	10622	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGGTCAAATCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	38411746	38379062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38379122_38384473_38384661_38393412_38393638_38396103_38396187_38399003_38399054_38402327_38402487_38405535_38405879_38406580_38406771_38408544_38408664_38411271
27621	chr3	+	1438	11	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-52	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	433.882299708112	50	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCGTGCTGGATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32762861	32781119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766407_32772567_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
27622	chr11	+	4589	5	Antisense	novelGene_ENSMUSG00000038615.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	267	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCCCTCCCCGCCCCCT	NA	False	NA	NA	False	NA	NA	NA	96708275	96720759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_96711342_96712075_96712238_96712926_96713148_96718023_96719045_96720640
27623	chr13	-	1561	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	243.10285888899	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312356_34312455_34312515_34312854_34312966_34313228_34313345_34314204
27624	chr19	-	4053	5	Antisense	novelGene_ENSMUSG00000099118.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGAAAAGAATCCTTCCC	NA	False	NA	NA	False	NA	NA	NA	40903429	40882528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_40882790_40885527_40885608_40896500_40896647_40899475_40899552_40899939
27626	chr4	-	2288	13	Fusion	ENSMUSG00000028393.11_ENSMUSG00000028394.10	novel	1247	12	NA	NA	-14	0	intron_retention	FALSE	canonical	0	0	junction_11	199.195935785179	7	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	NA	False	NA	NA	NA	62443319	62427405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62441971_62442348_62442554
27627	chr9	-	3806	9	NNC	ENSMUSG00000053110.14	novel	4171	9	NA	NA	-201	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_8	77.7872700060878	186	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCAACTTTTTTACATT	662	False	NA	NA	False	NA	NA	NA	8003977	7931999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_7934734_7936515_7936629_7938408_7938540_7950492_7950541_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8003860
27628	chr6	-	1356	3	NNC	ENSMUSG00000030057.16	novel	911	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5903.5	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGACAGTTTGGACTTT	NA	False	NA	NA	False	NA	NA	NA	87828004	87820062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822265_87827885
27629	chr11	+	2178	14	NNC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	157.909344076738	160	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50268595	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268630_50269085_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274718_50275470_50275564_50275967_50276018_50276603
27630	chr14	-	2651	7	NNC	ENSMUSG00000021273.12	novel	2860	8	NA	NA	-52	-1254	intron_retention	FALSE	canonical	0	0	junction_4	314.68860269585	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACTGGTCCTTGTCTTTC	4255	False	NA	NA	False	NA	NA	NA	63415298	63383855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394139_63396462_63396596_63400750_63402079_63415131
27633	chr5	+	3188	2	Antisense	novelGene_ENSMUSG00000001082.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	73	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGGTGGATGAACAGGGAA	NA	False	NA	NA	False	NA	NA	NA	34791220	34794488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_34791688_34791767
27634	chr8	+	3762	7	NIC	ENSMUSG00000031505.12	novel	1307	10	NA	NA	4995	-4	intron_retention	FALSE	canonical	3	252	junction_6	18.1536650722535	4	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTTGGAGTTTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	11552627	11563283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_11552773_11554884_11554931_11555430_11555520_11556706_11559558_11560226_11560348_11561876_11561998_11562894
27635	chr16	+	4578	10	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	64	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	189.144141259621	1	237	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTATGTTGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	84631876	84660650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84631912_84635968_84636065_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
27636	chr15	+	416	3	FSM	ENSMUSG00000022400.10	ENSMUST00000230219.2	555	3	8	131	8	-131	multi-exon	FALSE	canonical	3	4160	junction_1	326.5	93	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTAAAAGAAAGATTAGTT	NA	False	NA	NA	False	NA	NA	NA	81350552	81355390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81350652_81352355_81352435_81355152
27637	chr17	+	3186	14	NNC	ENSMUSG00000069135.12	novel	3505	13	NA	NA	-3	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	171.494544222914	1	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTATCCTCCATTTTACA	NA	False	NA	NA	False	NA	NA	NA	8384368	8415296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391845_8394350_8394411_8401059_8401287_8403232_8403350_8405354_8405414_8406899_8406959_8410229_8410270_8411016_8411114_8413352
27639	chr15	+	2837	10	NIC	ENSMUSG00000022351.15	novel	2758	11	NA	NA	-5	-9	intron_retention	FALSE	canonical	3	657	junction_1	54.3016267405192	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTCTTATGTTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	59186920	59203032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
27640	chr11	+	2022	6	NIC	ENSMUSG00000020708.13	novel	1394	10	NA	NA	5	-4	intron_retention	FALSE	canonical	3	2464	junction_1	115.843687786603	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACACTACAACTCCAGTT	4541	False	NA	NA	False	NA	NA	NA	106146984	106153942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147041_106147673_106147746_106151678_106152109_106152248_106153518_106153622_106153710_106153834
27641	chr2	+	2493	6	NNC	ENSMUSG00000027605.19	novel	646	3	NA	NA	-5332	-3315	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCTTCCCTGTAAGA	NA	False	NA	NA	False	NA	NA	NA	155405137	155415585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_155405642_155406681_155406867_155408719_155409808_155413438_155413508_155414845_155414921_155415013
27642	chr6	+	1820	9	ISM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	1367	0	177	0	3prime_fragment	FALSE	canonical	3	639	junction_3	41.793951416443	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	113024552	113045234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
27643	chr10	+	2086	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	-61	4	-61	-4	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	1162	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATTTTAAAGTGTCATT	NA	False	NA	NA	False	NA	NA	NA	93289211	93320732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
27644	chr16	-	1816	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	23	108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2263.47616442912	1	46	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGGCCGTCTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	87292569	87280767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283551_87284421_87284601_87285694_87285846_87287208_87287271_87287372_87287554_87288185_87288340_87290594_87290675_87291224_87291316_87292466
27646	chr7	+	3801	6	NNC	ENSMUSG00000037640.16	novel	2115	4	NA	NA	239	1223	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	77.0573812168568	6	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTGTGTCTGGCTCCA	NA	False	NA	NA	False	NA	NA	NA	27436030	27451109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27436118_27436360_27436414_27437727_27437855_27440381_27440481_27447592_27449596_27449677
27647	chr7	-	2872	6	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	-3	-3	combination_of_known_splicesites	FALSE	canonical	3	11	junction_5	84.7924524943111	168	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTTTGGGGTTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	55612219	55581037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55612143
27649	chrX	-	2885	5	NIC	ENSMUSG00000039231.19	novel	2778	6	NA	NA	27	-6	intron_retention	FALSE	canonical	3	73	junction_4	16.9908063375462	205	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTAATAAGCTTGAGATT	7327	False	NA	NA	False	NA	NA	NA	7940525	7927679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7929223_7929934_7930297_7936826_7937490_7938561_7938708_7940354
27650	chr3	-	1795	11	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-22	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	294.617056532713	17	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTATTTTTCTCTGACTC	8	True	NA	NA	False	NA	NA	NA	153650126	153627999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153647524_153647608_153650032
27652	chr3	-	307	1	NIC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	273	-1257	mono-exon	FALSE	NA	NA	NA	NA	NA	6	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAGCCATCTCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	87834126	87833819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_87833800_87834100
27654	chr3	-	1661	2	ISM	ENSMUSG00000004896.17	ENSMUST00000160068.2	823	3	-482	7	-482	-3	intron_retention	FALSE	canonical	3	119	junction_1	0	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTATAAATACCATGTAATT	NA	False	NA	NA	False	NA	NA	NA	87833064	87830972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_87831220_87831650
27655	chr11	+	1653	11	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	638.724698129014	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471228	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479316_69479468_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
27656	chr13	-	3257	5	NNC	ENSMUSG00000021494.10	novel	705	5	NA	NA	-4	1790	intron_retention	FALSE	non_canonical	0	0	junction_1	299.355140259859	16	54	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCCAACCGTAAAGTTA	NA	False	NA	NA	False	NA	NA	NA	55684338	55680444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55680693_55680924_55683618_55683698_55683859_55684108_55684220_55684293
27660	chr10	-	3151	2	Antisense	novelGene_ENSMUSG00000025354.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCGCTTCCGCCTTCCGT	929	False	NA	NA	False	NA	NA	NA	128645047	128641444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128641583_128642034
27661	chr1	-	2760	9	NNC	ENSMUSG00000004880.12	novel	3510	14	NA	NA	-2452	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	716.069468958843	1	123	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTTGCTGTTAGAGCC	NA	False	NA	NA	False	NA	NA	NA	181659171	181642902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649210_181656271_181656474_181659106
27662	chr7	-	2436	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	136	7	136	-7	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	1	68	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCCTCTGTTGCCCTAG	NA	False	NA	NA	False	NA	NA	NA	33867864	33840119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
27664	chr16	+	1908	8	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-9	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	311.805734916038	2	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	38383213	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383410_38384476_38384664_38393415_38393651_38402321_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
27665	chr7	-	2675	7	FSM	ENSMUSG00000033458.18	ENSMUST00000206778.2	2499	7	-712	536	-5	-536	multi-exon	FALSE	canonical	3	14	junction_1	4.99165971062398	5	85	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAAATCTATTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	64023833	64011775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_64011808_64012879_64012989_64014277_64014410_64016302_64016537_64018767_64018970_64021266_64021408_64022008
27666	chr11	-	1490	5	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	31922	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	695.087899117802	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTCTTTGACTGTAAA	NA	False	NA	NA	False	NA	NA	NA	75201092	75191176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197057_75198024_75198118_75200958
27667	chr4	+	3039	2	Antisense	novelGene_ENSMUSG00000039740.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	345	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCTGGCTACTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	47469834	47474353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_47472456_47473935
27668	chr1	+	724	2	Intergenic	novelGene_495	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	20	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGTGCTCTCAGGCAT	NA	False	NA	NA	False	NA	NA	NA	182099181	182100223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_182099363_182099680
27669	chr8	-	2387	3	ISM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	4725	162	2549	-162	3prime_fragment	FALSE	canonical	3	2132	junction_1	17	2	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	117715551	117708710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_117709466_117710546_117710679_117714051
27670	chr7	+	3434	4	FSM	ENSMUSG00000047603.10	ENSMUST00000056549.9	3373	4	-61	0	7	0	multi-exon	FALSE	canonical	3	32	junction_3	6.18241233033047	65	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTTTCTCATCCTTT	NA	False	NA	NA	False	NA	NA	NA	23833605	23842666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_23833913_23834682_23834741_23836470_23836598_23839724
27671	chr11	+	1521	11	ISM	ENSMUSG00000007739.11	ENSMUST00000020562.5	1634	13	5284	-175	310	175	3prime_fragment	FALSE	canonical	3	4905	junction_3	309.890125689735	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAACTCCATATTAACTT	NA	False	NA	NA	False	NA	NA	NA	22945933	22953326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
27672	chr18	-	2004	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	-15	0	-15	0	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	1895	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	NA	False	NA	NA	NA	36916273	36899580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
27673	chr15	+	2564	16	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	20011	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	71.6467879407181	11	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57799419	57833458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805956_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
27674	chr2	+	3093	9	NNC	ENSMUSG00000027287.15	novel	2730	9	NA	NA	-8	1790	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	126.116451642916	27	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTAATTAGGTTCCTAAT	NA	False	NA	NA	False	NA	NA	NA	120398163	120433526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756_120431318_120432725
27675	chr17	-	2463	5	NIC	ENSMUSG00000024459.19	novel	2459	4	NA	NA	10	271	intron_retention	FALSE	canonical	3	15	junction_4	93.890894127173	599	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAAGTGTTAAGTGAGA	NA	False	NA	NA	False	NA	NA	NA	37300386	37294681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396_37300097_37300320
27676	chr6	-	2986	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-11	3	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	24.9699819783675	508	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGTATCGGAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	146479344	146451135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
27677	chr8	+	1156	4	FSM	ENSMUSG00000031839.8	ENSMUST00000034300.8	1208	4	25	27	-3	-27	multi-exon	FALSE	canonical	0	0	junction_2	885.438121308692	6994	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATACAATAAAAACCAAGAGT	NA	False	NA	NA	False	NA	NA	NA	120071251	120075634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120074774
27678	chr2	+	2953	15	NNC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	22	-953	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	218.740504167073	5	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTCCTGATATGTGGT	NA	False	NA	NA	False	NA	NA	NA	29825461	29849430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29833995_29834071_29838901_29839042_29839164_29839359_29840613_29840744_29845617_29845701_29847761_29847826_29848458
27679	chr7	+	2079	12	NNC	ENSMUSG00000025495.16	novel	408	3	NA	NA	2040	552	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	84.6823915463925	39	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	140714505	140736067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140714645_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
27680	chr5	-	1504	1	NIC	ENSMUSG00000037936.16	novel	2521	13	NA	NA	5569	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	125355654	125354150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_125354200_125355700
27681	chr2	-	1046	1	Intergenic	novelGene_2727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGCTGTGATTATGCCC	4258	False	NA	NA	False	NA	NA	NA	150132406	150131360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_150131400_150132400
27682	chrX	+	3302	7	NNC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-28793	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	101.340049119564	1	112	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAAAAAATACCTATTGG	NA	False	NA	NA	False	NA	NA	NA	84192748	84248644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_84192802_84193823_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
27683	chr9	+	4170	10	FSM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	153	5	153	0	multi-exon	FALSE	canonical	3	168	junction_1	19.0852538254079	197	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGATGTCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	102595019	102610612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_102595102_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
27684	chr10	-	3182	23	NNC	ENSMUSG00000038417.5	novel	3282	23	NA	NA	46	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	83.1972787420517	2	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGCTGGTTTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	41179210	41064171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127762_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
27686	chr18	+	2200	21	NNC	ENSMUSG00000008301.12	novel	1386	5	NA	NA	-35699	-7386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.435889894354067	240	5	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGGCCTGCGGAGGCGC	NA	False	NA	NA	False	NA	NA	NA	56659815	56705986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_56660080_56661106_56661234_56661348_56661424_56664560_56664638_56664783_56664880_56665051_56665168_56665557_56665667_56667261_56667351_56670278_56670371_56671772_56671814_56675295_56675395_56678036_56678114_56679974_56680016_56681513_56681651_56683366_56683490_56684229_56684313_56692293_56692359_56693846_56693899_56695099_56695279_56695556_56695755_56705926
27687	chr11	+	1168	8	Antisense	novelGene_ENSMUSG00000020929.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGGCTCGGCAATCATGG	NA	False	NA	NA	False	NA	NA	NA	102729302	102732563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102729725_102729977_102730084_102730245_102730399_102730848_102730947_102731090_102731209_102731995_102732078_102732220_102732354_102732507
27688	chr6	+	2520	3	FSM	ENSMUSG00000030245.11	ENSMUST00000146508.2	367	3	-5	-2148	-5	0	multi-exon	FALSE	canonical	3	32	junction_1	306	46	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	142332973	142349584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_142333096_142341913_142341996_142347268
27690	chr1	-	2604	8	FSM	ENSMUSG00000026577.14	ENSMUST00000086032.4	1602	8	-61	-941	-61	200	multi-exon	FALSE	canonical	3	8	junction_7	61.8978750747997	266	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCAATTTCTTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	164135119	164118757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715_164134924_164135010
27691	chr7	+	2189	13	Antisense	novelGene_ENSMUSG00000065118.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGGCTGCACCGCCGTGG	585	False	NA	NA	False	NA	NA	NA	143067319	143102819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_143068375_143074120_143074180_143077872_143078019_143078433_143078454_143080902_143081047_143083152_143083289_143086072_143086117_143088021_143088157_143089389_143089475_143089634_143089772_143091947_143092054_143093924_143093986_143102758
27693	chrX	-	1294	9	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGCACCTCCAATGGCT	NA	False	NA	NA	False	NA	NA	NA	20548935	20544891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547752_20548138_20548242_20548345_20548449_20548616
27696	chr15	-	4812	27	NNC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	46.5584985473356	3	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTCTGCCTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	54935548	54878528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_54879550_54879768_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934842_54935238
27697	chr9	-	2870	11	FSM	ENSMUSG00000031969.17	ENSMUST00000060513.8	2859	11	-13	2	4	-2	multi-exon	FALSE	canonical	3	181	junction_10	23.6862829502647	483	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAAATTTATTTTCATG	9235	False	NA	NA	False	NA	NA	NA	26910858	26885441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
27698	chr11	-	3869	9	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	-5	intron_retention	FALSE	non_canonical	0	0	junction_5	160.562877091811	1	142	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTACTACATTGCCGAT	974	False	NA	NA	False	NA	NA	NA	79145498	79130218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79134402_79135288_79135390_79137001_79137128_79139216_79139486_79141806_79141976_79145178
27699	chr10	+	1545	12	Antisense	novelGene_ENSMUSG00002076354.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCGAGGAAAGCGCGAGCA	3239	False	NA	NA	False	NA	NA	NA	128394504	128401788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128394840_128394929_128394978_128395095_128395220_128395299_128395401_128395947_128396163_128396526_128396605_128396785_128396852_128398695_128398791_128398936_128399005_128399092_128399201_128399447_128399574_128401607
27700	chr5	-	1704	1	FSM	ENSMUSG00000104559.2	ENSMUST00000199149.2	775	1	-70	-859	-70	859	mono-exon	FALSE	NA	NA	NA	NA	NA	22	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	111536225	111534521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_111534500_111536200
27701	chr7	-	1912	1	Antisense	novelGene_ENSMUSG00000040952.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGAAGTGGTCCCCTACA	1442	False	NA	NA	False	NA	NA	NA	24588329	24586417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_24586400_24588300
27702	chr4	-	1669	4	NNC	ENSMUSG00000028873.17	novel	771	7	NA	NA	-5	-3089	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_3	742.837054062928	5	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAAATGGTCGGATTACT	NA	False	NA	NA	False	NA	NA	NA	124830671	124823567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_124824906_124830147_124830277_124830381_124830522_124830609
27704	chr6	-	1681	9	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	933	junction_3	2143.24518837673	2	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446825	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443686_51443885_51444033_51444164_51444276_51446650
27705	chr2	+	4526	3	Antisense	novelGene_ENSMUSG00000040321.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	108	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGACTGGCTGAGTGCGCAA	NA	False	NA	NA	False	NA	NA	NA	114023770	114031907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_114028109_114031435_114031533_114031816
27706	chr17	+	2202	18	FSM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	94	1154	94	85	multi-exon	FALSE	canonical	3	1341	junction_7	117.232918130641	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACACAGTAAATAGACACAC	NA	False	NA	NA	False	NA	NA	NA	71923303	71964872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
27707	chr3	-	5009	27	NNC	ENSMUSG00000086090.2	novel	487	3	NA	NA	7015	40509	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	82	19	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTCCTCTCCTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	37107164	37065854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_37065944_37067028_37067160_37068553_37068678_37075595_37075704_37076530_37076624_37077118_37077182_37080237_37080493_37082188_37082403_37084047_37084229_37084693_37084792_37086512_37086674_37087408_37087546_37088696_37088902_37089923_37090123_37090800_37090983_37092670_37092812_37093425_37093685_37094467_37094621_37095150_37095308_37095435_37095628_37095850_37096071_37098729_37098981_37100381_37100585_37102112_37102307_37102659_37102797_37104910_37105073_37106464
27708	chr5	+	826	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6624.55618437945	6	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121343523	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345217_121346453_121346639_121346844
27709	chr7	-	2162	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	-10	0	-10	0	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	783	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGTGAATCTATTTA	NA	False	NA	NA	False	NA	NA	NA	132178137	132159206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
27710	chr10	+	2640	14	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	2	-29	intron_retention	FALSE	non_canonical	0	0	junction_3	674.347618116333	1	118	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTTTCCATTAAAGCAGT	1591	False	NA	NA	False	NA	NA	NA	79690468	79700164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694665_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698528_79698704_79698811_79698890_79698978_79699403_79699448
27711	chr7	-	2623	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	-16	930	-5	0	multi-exon	TRUE	canonical	3	349	junction_15	41.3256881370413	463	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTGAGGATGTGGGAACA	9317	False	NA	NA	False	NA	NA	NA	44804013	44791258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
27712	chr16	-	1950	10	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1270.56748281823	53	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	1000	False	NA	NA	False	NA	NA	NA	11021149	11010833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11015132_11015184_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
27713	chr2	+	2324	13	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	5.73488351136175	13	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGCGTGTCGGTGCTGT	2775	False	NA	NA	False	NA	NA	NA	30023835	30042018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711_30040540_30041725
27714	chr11	+	3113	1	NIC	ENSMUSG00000063316.14	novel	614	5	NA	NA	-28	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	29	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATACAAGTGTCTGC	2353	False	NA	NA	False	NA	NA	NA	101333235	101336348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101333200_101336300
27715	chr13	-	1895	14	ISM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	61	6653	0	3263	5prime_fragment	FALSE	canonical	3	390	junction_13	30.4811514171623	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAAGACCTGGCTTGAA	NA	False	NA	NA	False	NA	NA	NA	96807383	96792127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
27717	chr6	-	3012	12	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-8	-24	intron_retention	FALSE	non_canonical	0	0	junction_3	446.204822701025	1	117	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9164	False	NA	NA	False	NA	NA	NA	88495818	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484167_88484322_88485543_88485705_88489083_88489215_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
27718	chr3	-	2861	8	ISM	ENSMUSG00000037174.19	ENSMUST00000163748.8	2656	9	2746	-455	2746	0	3prime_fragment	FALSE	canonical	3	56	junction_7	80.0244860486273	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGTTTTGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	51230662	51162650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51215470_51215637_51230642
27720	chr12	+	2495	24	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	14960	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	443.568524488409	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACACACTTGTCCTTGTC	NA	False	NA	NA	False	NA	NA	NA	76317213	76361752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76317277_76326888_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330797_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350405_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722
27721	chr11	+	2497	15	NNC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	273.243182412103	12	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	80319454	80364074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535_80363430_80363776
27722	chrX	+	1056	10	ISM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	108	11436	13	1440	5prime_fragment	FALSE	canonical	3	1167	junction_1	597.038989979344	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTCTCGCCCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	20524672	20537982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928
27723	chr7	+	3338	25	NNC	ENSMUSG00000023118.16	novel	4116	27	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	34.3995871664504	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGAGGATGTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	18758337	18788540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862_18783965_18786291_18786480_18787194_18787282_18788483
27724	chr11	+	3863	3	FSM	ENSMUSG00000037750.17	ENSMUST00000073705.12	3258	3	30	-635	-18	635	multi-exon	FALSE	canonical	3	80	junction_2	31	171	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACCTCATCTTTTTTTTT	2628	False	NA	NA	False	NA	NA	NA	77985515	78048161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_77985618_78033918_78034041_78044522
27725	chr7	+	3064	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	-4	5	-4	-5	multi-exon	FALSE	canonical	3	24	junction_1	56.3067853960129	210	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACAGGAAGTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	97492137	97561583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
27726	chr4	+	3744	6	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-4949	-2	intron_retention	FALSE	canonical	3	207	junction_3	55.5280109494298	15	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTCTTGTGTGTATCCTT	NA	False	NA	NA	False	NA	NA	NA	11604425	11615803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11605006_11606045_11606337_11609293_11609470_11610303_11612439_11612617_11612819_11615442
27727	chr15	-	1581	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	35	0	-35	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	4	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATGTCTCAAAGTAAAAG	158	False	NA	NA	False	NA	NA	NA	98832319	98829340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
27728	chr4	+	2792	9	FSM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	28	2	0	-2	multi-exon	FALSE	canonical	3	246	junction_4	17.2191753577226	243	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGAGGCTTCTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	85123705	85307615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790
27729	chr10	-	2876	7	NNC	ENSMUSG00000020069.17	novel	1633	9	NA	NA	6	0	intron_retention	FALSE	canonical	2	4	junction_6	183.05008422105	6	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5787	False	NA	NA	False	NA	NA	NA	62859667	62851206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62855307_62859523
27730	chr7	-	3210	22	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-26	-7	intron_retention	FALSE	canonical	3	15	junction_18	41.7402072103048	1	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTTCTGAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	140697745	140681144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140690288_140690426_140690543_140690670_140691067_140691143_140697626
27731	chr7	+	1703	12	Antisense	novelGene_ENSMUSG00000109038.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGCGGGTGACACCTTT	NA	False	NA	NA	False	NA	NA	NA	89603882	89629499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_89604272_89604738_89604815_89605464_89605622_89611463_89611569_89613935_89614075_89616922_89617018_89618781_89618861_89619513_89619639_89620746_89620812_89621436_89621531_89626103_89626260_89629276
27732	chr2	-	3123	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	41	31	9	-24	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	3	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAACTAGAATATAATCT	NA	False	NA	NA	False	NA	NA	NA	74409251	74350708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
27733	chr6	+	2455	8	NNC	ENSMUSG00000029767.17	novel	2670	7	NA	NA	27	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	377.716987239096	17	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAAACTGTTTACATTC	-7	True	NA	NA	False	NA	NA	NA	29348144	29376646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29348208_29356469_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397_29374656_29375361
27734	chr5	-	4175	18	NIC	ENSMUSG00000029253.13	novel	3192	19	NA	NA	40	-8	intron_retention	FALSE	canonical	3	99	junction_9	18.0583445040893	45	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAAAGTGGCATCTTGT	NA	False	NA	NA	False	NA	NA	NA	86213341	86159890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
27736	chr19	-	1996	12	FSM	ENSMUSG00000003680.17	ENSMUST00000176610.9	2065	12	58	11	-1	-7	multi-exon	FALSE	canonical	3	151	junction_4	26.5722156514676	56	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACCCGGAAGTGACGTGT	9959	False	NA	NA	False	NA	NA	NA	8763622	8751866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
27737	chr8	+	2108	18	NNC	ENSMUSG00000001472.18	novel	2738	18	NA	NA	1	100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	144.374536953076	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCCGTGTCTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	124100563	124128070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124100804_124108138_124108272_124109304_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
27738	chr14	-	2135	8	NNC	ENSMUSG00000037722.9	novel	710	7	NA	NA	5	-771	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	610.124443646289	175	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGATGTTAGTATTTC	NA	False	NA	NA	False	NA	NA	NA	45626413	45614561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45615944_45616128_45616232_45616334_45616539_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626388
27739	chr8	-	2479	15	NIC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	-116	-873	intron_retention	FALSE	canonical	3	18	junction_13	104.717891187198	1	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATACCATCAGGGAGATGC	895	False	NA	NA	False	NA	NA	NA	3671432	3660962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668858_3669094_3671227
27740	chr5	-	4029	6	NNC	ENSMUSG00000037822.13	novel	1177	6	NA	NA	-81	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.184477605138	711	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCGTTTTCTGTTTGAC	NA	False	NA	NA	False	NA	NA	NA	65650305	65604188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65604752_65604842_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
27742	chr8	-	3126	10	FSM	ENSMUSG00000031949.18	ENSMUST00000034427.12	3159	10	31	2	31	-2	multi-exon	FALSE	canonical	3	33	junction_1	12.5521135891752	110	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTAGTAACATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	112718903	112693541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112695177_112698736_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
27743	chrX	+	3361	10	FSM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	-90	6	8	-1	multi-exon	FALSE	canonical	3	227	junction_1	30.4046780026437	426	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATTGAGTCTCCCGTT	NA	False	NA	NA	False	NA	NA	NA	7628806	7641435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
27744	chr10	+	1844	9	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	26	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1241.50442382418	11	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTTCACTCCTGAATT	872	False	NA	NA	False	NA	NA	NA	127894848	127913123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127894998_127895109_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
27745	chr16	-	2228	14	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	169	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	530.602270284221	1	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATACTTGGTTTAAAATT	NA	False	NA	NA	False	NA	NA	NA	15455095	15441970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442112_15445606_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453952_15454045_15454214_15454484_15454647_15454974
27747	chr7	+	2708	1	Antisense	novelGene_ENSMUSG00000059119.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAACACAAAAATTACACC	378	False	NA	NA	False	NA	NA	NA	143069895	143072603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_143069900_143072600
27748	chr11	-	2751	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	103	4	-71	-4	multi-exon	FALSE	canonical	3	983	junction_2	78.1211180853749	1	118	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACACTCCTCATATTATT	NA	False	NA	NA	False	NA	NA	NA	60701988	60678933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
27749	chr15	-	1498	9	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-3042	-83	at_least_one_novel_splicesite	FALSE	canonical	1	130	junction_7	1965.98548761175	2	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	4083	False	NA	NA	False	NA	NA	NA	31597716	31591028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595792_31595990_31597556
27750	chr11	+	3407	24	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	55	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	596.559166654466	1	146	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTTTTTCTTATGTGT	NA	False	NA	NA	False	NA	NA	NA	23206643	23246224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206718_23211834_23211967_23217661_23217757_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228344_23228774_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
27751	chr5	-	1526	11	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-43	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	621.138631868925	18	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCTGTAGAGTTTTTAG	2277	False	NA	NA	False	NA	NA	NA	138170123	138162848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163363_138166181_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
27752	chr5	+	1726	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1353.29752977002	2	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	717	False	NA	NA	False	NA	NA	NA	77099584	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112390_77114577
27753	chr11	+	2878	11	NNC	ENSMUSG00000020741.18	novel	6098	24	NA	NA	356	-11	intron_retention	FALSE	canonical	0	0	junction_1	102.666498917612	4	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAACCTGCTGCCCCAGC	NA	False	NA	NA	False	NA	NA	NA	74555663	74561662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74555753_74555974_74556253_74556518_74556604_74556748_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
27754	chr9	+	4464	19	FSM	ENSMUSG00000034485.11	ENSMUST00000214354.2	4417	19	-55	8	-55	-8	multi-exon	FALSE	canonical	3	92	junction_11	29.0464187886294	112	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCGTTGTTGAATTTTAC	NA	False	NA	NA	False	NA	NA	NA	60701768	60787633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761780_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60783643_60783710_60787455
27755	chrX	-	1767	14	Intergenic	novelGene_4088	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACGCATCAGGGAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	150844781	150819095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150819245_150819336_150819473_150820363_150820487_150820589_150820693_150824321_150824475_150829668_150829802_150829890_150830045_150830853_150830963_150841772_150841931_150842352_150842509_150842622_150842773_150843969_150844040_150844286_150844398_150844719
27757	chr9	+	2028	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	-43	-2	5	0	multi-exon	FALSE	canonical	3	290	junction_11	154.653737577573	1223	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21914318	21925518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
27758	chr10	-	2604	11	NIC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	10	-5	intron_retention	FALSE	canonical	3	1317	junction_1	99.9474361852269	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTCCTTTCTTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	85793677	85774505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_85774984_85777762_85777883_85778351_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
27759	chr5	+	2087	5	Antisense	novelGene_ENSMUSG00000088712.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACACGGACGTCCCGCC	NA	False	NA	NA	False	NA	NA	NA	92201244	92231561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92202913_92203242_92203364_92204128_92204222_92221106_92221138_92231387
27760	chr17	+	1738	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	-576	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	2460	False	NA	NA	False	NA	NA	NA	35816338	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821270_35821462
27762	chr5	+	2826	2	ISM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	15	3	0	-3	intron_retention	FALSE	canonical	3	460	junction_1	0	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTTTTGGCAGCTTGAT	775	False	NA	NA	False	NA	NA	NA	129792581	129795541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129792614_129792747
27763	chr11	-	1742	7	NNC	ENSMUSG00000062825.16	novel	1189	7	NA	NA	-3	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2433.92299362344	191	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGCAGTAACTGACCAT	NA	False	NA	NA	False	NA	NA	NA	120239318	120236531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
27765	chr14	+	1385	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1082.36623499935	18	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6575	False	NA	NA	False	NA	NA	NA	76741953	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744271_76744605
27766	chr18	+	2581	11	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26645	-10308	at_least_one_novel_splicesite	FALSE	canonical	3	1027	junction_9	143.350479594594	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAATTGTTGTGACAGCCC	6440	False	NA	-82	True	NA	NA	NA	77126258	77224325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475
27768	chr12	-	2006	15	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-4925	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	349.172987944663	59	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87523969	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497148_87497614_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017_87519029_87523796
27769	chr4	-	2726	16	FSM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	-58	-352	-58	352	multi-exon	TRUE	canonical	3	76	junction_4	15.9114214743163	279	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTTAAGAAAAAAAAAGGGC	NA	False	NA	NA	False	NA	NA	NA	140501605	140472823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
27770	chrX	-	3683	16	ISM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	219	2589	32	-353	5prime_fragment	FALSE	canonical	3	85	junction_6	16.4996969669143	4	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTCGTATAATGACTTCT	NA	False	NA	NA	False	NA	NA	NA	10082940	10027199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
27771	chrX	-	1047	1	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGACTTCTTTCTTGTTCA	2481	False	NA	NA	False	NA	NA	NA	13070076	13069029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13069000_13070100
27772	chr6	-	4068	20	NIC	ENSMUSG00000030064.17	novel	4311	23	NA	NA	183	2	combination_of_known_junctions	FALSE	canonical	3	10	junction_19	20.0048470580801	32	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGTCATTTGTATCAC	7629	False	NA	NA	False	NA	NA	NA	97373482	97264040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97373386
27773	chr7	+	3719	13	NNC	ENSMUSG00000040268.18	novel	2301	13	NA	NA	0	180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	72.7499522718438	233	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATCCTTGAATTCTTGG	NA	False	NA	NA	False	NA	NA	NA	130467627	130515222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130467719_130479457_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511359_130512561
27774	chrX	-	3307	13	FSM	ENSMUSG00000067369.13	ENSMUST00000087541.12	3119	13	44	-232	-11	232	multi-exon	TRUE	canonical	1	13	junction_4	11.7686022959398	163	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTGACACTATTACTGAG	NA	False	NA	NA	False	NA	NA	NA	133177687	133123611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
27775	chr16	-	1761	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	12	57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1306.23014973688	2	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTTATTTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	87292735	87280818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280961_87281700_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
27777	chr1	-	2293	5	ISM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	803	-585	191	2	3prime_fragment	FALSE	canonical	3	63	junction_4	739.620299545652	3	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGTTGTCATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	161077933	161068582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928
27778	chr12	+	1841	7	NNC	ENSMUSG00000021134.18	novel	1491	8	NA	NA	-7	1	intron_retention	FALSE	canonical	0	0	junction_2	821.252025196218	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAACTGCTTTTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	80992270	80997272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992443_80993349_80993499_80994093_80994156_80994269_80994369_80994569_80994640_80995868_80996379_80996493
27779	chr5	+	1803	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-49	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1405.28764245072	2	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	707	False	NA	NA	False	NA	NA	NA	77099574	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104510_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77115031_77115209
27780	chr11	+	2531	12	FSM	ENSMUSG00000017499.16	ENSMUST00000093937.3	2559	12	27	1	27	-1	multi-exon	FALSE	canonical	0	0	junction_1	188.370085884671	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTGTCTGGGCTGCATTT	297	False	NA	NA	False	NA	NA	NA	98799003	98812718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98799146_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
27782	chr17	-	417	4	FSM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	26	954	1	127	multi-exon	FALSE	canonical	3	251	junction_3	23.9072281027215	589	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTCTGGCAACTATTTC	NA	False	NA	NA	False	NA	NA	NA	29935992	29923259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29923444_29924244_29924298_29924462_29924558_29935907
27783	chr4	-	820	4	Antisense	novelGene_ENSMUSG00000065990.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCGCAACAGGCCCACCGA	NA	False	NA	NA	False	NA	NA	NA	155917498	155916145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_155916525_155916805_155916911_155917069_155917251_155917343
27784	chr18	-	2142	11	FSM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	8	2	8	0	multi-exon	FALSE	canonical	3	554	junction_9	38.6638073655454	1015	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAACTGCCGTGGTCTGA	NA	False	NA	NA	False	NA	NA	NA	84700176	84685595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
27787	chr10	-	3034	12	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-7	-8	intron_retention	FALSE	canonical	3	67	junction_8	149.388671614054	4	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGCATTTTTATGTGAA	NA	False	NA	NA	False	NA	NA	NA	116417423	116321699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
27788	chr2	-	3566	14	FSM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	46	6	2	-6	multi-exon	FALSE	canonical	3	167	junction_13	14.5093318267649	181	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGGGGATGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	150510132	150460030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150509804
27789	chr7	-	1342	3	Antisense	novelGene_ENSMUSG00000066979.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	131172906	131169261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_131170081_131170226_131170451_131172607
27790	chr4	-	2924	8	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	521	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	543.322770232448	1	110	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141323259	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316643_141316727_141317254_141317437_141322534_141322791_141323205
27791	chrX	-	5496	21	NIC	ENSMUSG00000037475.16	novel	7622	39	NA	NA	-5514	-245	combination_of_known_junctions	FALSE	canonical	2	42	junction_7	39.5126562002607	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACCAGCGCTCACTTG	NA	False	NA	NA	False	NA	NA	NA	40925463	40884112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_40886657_40891823_40891870_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901453_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377
27792	chr6	-	2303	8	NIC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	-1	-7	intron_retention	FALSE	canonical	3	195	junction_2	26.1635359277927	187	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAATGTGCATGCCTCG	5276	False	NA	NA	False	NA	NA	NA	126916539	126900384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
27794	chr15	+	2609	15	NIC	ENSMUSG00000008690.16	novel	3223	20	NA	NA	3	14	intron_retention	FALSE	canonical	3	145	junction_1	229.806351486797	2	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCTGTTCACCGGACAGA	NA	False	NA	NA	False	NA	NA	NA	89239968	89255780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89248038_89248124_89248205_89248290_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254692_89254806_89254879_89254955_89255197_89255296
27795	chr12	-	1595	6	FSM	ENSMUSG00000044573.17	ENSMUST00000219697.2	668	6	-18	-909	0	909	multi-exon	FALSE	canonical	3	794	junction_3	322.338331571037	5536	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGTCTGCCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	30961588	30944965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954983_30955067_30955142_30961488
27796	chr12	-	1635	11	NNC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	2	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	326.624937810939	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGTATATGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	36206718	36141839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180094_36206651
27797	chr10	-	1974	11	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-20	-195	at_least_one_novel_splicesite	FALSE	canonical	2	26	junction_10	802.287136878063	4	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGCTAACCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	127358291	127353202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354712_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356532_127358186
27798	chr3	+	1721	14	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	74	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	384.437574283147	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAAGCGTGCTGGATTTG	NA	False	NA	NA	False	NA	NA	NA	32762772	32781116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766299_32768705_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
27800	chr5	+	2789	8	FSM	ENSMUSG00000064267.14	ENSMUST00000072602.14	2790	8	-25	26	-25	-26	multi-exon	FALSE	canonical	3	30	junction_1	20.2887321698825	152	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGCTGTCATGGGGCTT	NA	False	NA	NA	False	NA	NA	NA	122347766	122380334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122347985_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
27801	chr11	+	3223	8	NIC	ENSMUSG00000034773.17	novel	2547	10	NA	NA	-3	-26	intron_retention	FALSE	canonical	3	289	junction_3	23.3141806720323	3	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGCGTCCCTTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	102139704	102155987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150769_102150904_102151443_102153008_102153127_102155460
27802	chr1	+	2372	8	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	32.9978354268449	2	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGACTGTTCTATTTT	NA	False	NA	NA	False	NA	NA	NA	173248149	173293606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173292536
27803	chr2	+	1796	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	889.776325669672	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119895_130120075_130120211_130120816_130120981_130121044
27804	chrX	-	2476	2	Antisense	novelGene_ENSMUSG00000079297.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTCGGACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	32946396	32943122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_32943344_32944141
27805	chr7	-	1930	7	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	66	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	897.784201365909	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCAGTTGGAACCCTTT	NA	False	NA	NA	False	NA	NA	NA	117728717	117718139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117719259_117719305_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
27806	chr5	+	3045	2	NNC	ENSMUSG00000029464.11	novel	809	3	NA	NA	-1551	-17	intron_retention	FALSE	canonical	1	1	junction_1	0	1	81	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATATTAAGAAGAAAACTG	3771	False	NA	NA	False	NA	NA	NA	122517779	122520948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122519369_122519492
27807	chr17	-	3198	6	FSM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	-20	-1074	-20	1074	multi-exon	FALSE	canonical	3	79	junction_1	5.98665181883831	178	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTATTAAAAGATACAAAA	4803	False	NA	NA	False	NA	NA	NA	23805226	23793743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
27808	chr9	+	3043	6	NNC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	0	-5	intron_retention	FALSE	canonical	2	30	junction_3	701.010242435872	74	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGGTTATGGTGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	54858073	54865309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54858188_54859365_54859393_54859624_54859701_54859962_54860126_54861946_54864219_54864918
27809	chrX	+	1178	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	100	-68	100	68	mono-exon	FALSE	NA	NA	NA	NA	NA	6	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068909	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068900_13070100
27810	chr15	-	1517	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4701.41214822738	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGTTTCTGGATACTT	163	False	NA	NA	False	NA	NA	NA	98832314	98829308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829568_98829658_98830444_98830572_98830722_98830853_98831077_98832213
27811	chr15	+	2663	12	NNC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	10	-261	intron_retention	FALSE	non_canonical	0	0	junction_4	425.805643787153	3	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCTGTGCCCACTGTG	205	False	NA	NA	False	NA	NA	NA	38662197	38692426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_38662328_38673100_38674209_38676271_38676358_38677762_38677858_38679562_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
27812	chr2	-	1522	7	ISM	ENSMUSG00000039671.19	ENSMUST00000153655.8	2484	11	32100	1384	8445	-1331	3prime_fragment	FALSE	canonical	3	430	junction_1	47.8121323515277	3	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCAGTACCAAATGCTGC	NA	False	NA	NA	False	NA	NA	NA	165685597	165670432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683
27813	chr7	-	3374	13	NNC	ENSMUSG00000044465.20	novel	3521	13	NA	NA	-3	11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	127.055406767634	2	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCTTTGCCACCCTTTA	NA	False	NA	NA	False	NA	NA	NA	105049212	105027805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_105028337_105030286_105030450_105030605_105030675_105030717_105030785_105032987_105033781_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
27814	chr7	+	2229	8	FSM	ENSMUSG00000045411.17	ENSMUST00000146155.8	988	8	0	-1241	0	0	multi-exon	FALSE	canonical	0	0	junction_3	335.825391948779	1	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43896248_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
27816	chr4	-	1609	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	31	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	798.476950199566	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTTCTTTTTGTGTGTG	30	False	NA	NA	False	NA	NA	NA	41098152	41092725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093627_41093826_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
27818	chr18	+	1610	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-98	-157	-98	157	mono-exon	FALSE	NA	NA	NA	NA	NA	20	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	82356488	82358098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
27819	chr11	+	1420	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-1	-174	multi-exon	FALSE	canonical	3	1960	junction_1	0	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCCACTTTGATGGGAAAA	NA	False	NA	NA	False	NA	NA	NA	120653618	120655071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
27820	chr8	-	1723	4	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_1	1777.51193151176	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43759964	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749570_43753660_43753743_43757512_43757597_43759877
27821	chr2	+	1725	10	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	143	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1010.21506083398	4	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTATTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	130116554	130121230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130119395_130119545_130119768_130119895_130120079_130120211_130120816
27822	chr11	-	2496	11	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	-283	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	177.1196205958	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATTATGCATTCTTGTC	974	False	NA	NA	False	NA	NA	NA	79145498	79130496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79133324_79133467_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
27823	chr14	+	1876	11	NNC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	0	921	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	775.033263802271	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATATCACAGATTACATG	NA	False	NA	NA	False	NA	NA	NA	14296810	14304698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291_14303617_14304111
27824	chr1	+	2342	7	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	377.680824977329	1	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGATTGCTTTATATAGT	NA	False	NA	NA	False	NA	NA	NA	4878106	4916956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4902533_4902609_4907223_4907298_4909609_4909724_4911178_4911356_4915185
27825	chr11	-	2728	5	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	358	-39	intron_retention	FALSE	canonical	3	253	junction_4	19.0705925445435	5	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGCTGAAAAAAAATAAACA	NA	False	NA	NA	False	NA	NA	NA	77784564	77771479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
27826	chr12	+	2026	9	NNC	ENSMUSG00000021134.18	novel	3482	4	NA	NA	-73	-6	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	901.120136274848	2	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTATAAAACTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	80993076	80997265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80993227_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80995437_80995868_80995943_80996267_80996379_80996493
27827	chr19	-	3269	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	-40	1830	-40	-143	multi-exon	FALSE	canonical	3	707	junction_13	63.1947496940125	1	98	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTTTTAAAATCTCTTA	NA	False	NA	NA	False	NA	NA	NA	37340050	37247971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
27828	chr6	-	1883	10	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	91	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1661.2181013482	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGTTGGGAGATAAACTC	8576	False	NA	NA	False	NA	NA	NA	145021819	144944895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945684_144945919_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980317_145021614
27829	chr8	+	1985	10	NNC	ENSMUSG00000019139.11	novel	1916	10	NA	NA	15	0	intron_retention	FALSE	canonical	1	1	junction_7	127.797583006183	869	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTGTGTGCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	71047037	71049940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049180_71049260_71049343_71049562_71049646
27830	chr8	+	2569	9	ISM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	-17	-8	-17	8	intron_retention	FALSE	canonical	3	858	junction_2	55.805325686712	540	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTCACCGTAAAATCTCT	2569	False	NA	NA	False	NA	NA	NA	123294736	123299875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675
27831	chr11	-	2501	1	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	4082	17	2794	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	76	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	2659	False	NA	NA	False	NA	NA	NA	96710757	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_96708300_96710800
27832	chr3	-	2038	14	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_13	58.8212617035912	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	96634791	96618838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96634664
27833	chrX	-	2006	9	FSM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	-9	-1	3	1	multi-exon	FALSE	canonical	3	147	junction_8	135.330151850946	1097	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTGAACTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	138963326	138907552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
27834	chr7	-	1773	8	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-23	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	737.759874656423	3	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8842	False	NA	NA	False	NA	NA	NA	141941617	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141941504
27838	chr1	+	3250	4	Antisense	novelGene_ENSMUSG00000097519.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCCGGACGCACGCGGC	NA	False	NA	NA	False	NA	NA	NA	57397203	57416724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_57399818_57401719_57401923_57414406_57414677_57416561
27839	chr7	-	3016	7	FSM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	12	6	5	-6	multi-exon	FALSE	canonical	3	20	junction_3	6.10100173924104	176	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCACTAATTTGTCATTG	NA	False	NA	NA	False	NA	NA	NA	4448636	4428671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448445
27840	chr9	-	1518	1	Intergenic	novelGene_1157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	191	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCCCAGCAACCACATGG	NA	False	NA	NA	False	NA	NA	NA	106720517	106718999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_106719000_106720500
27841	chr1	+	1985	3	NIC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	2982	junction_1	71	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTGGCTCTTCATTTTG	NA	False	NA	NA	False	NA	NA	NA	63216283	63218814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_63216451_63216912_63218533_63218616
27842	chr9	+	1661	9	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	439.721787042671	3155	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGACTCTGAGTGGCTT	641	False	NA	NA	False	NA	NA	NA	45281755	45307450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45291799_45291952_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
27843	chr16	+	3952	1	ISM	ENSMUSG00000022865.15	ENSMUST00000023572.15	5742	7	35085	228	7556	-228	mono-exon	FALSE	NA	NA	NA	NA	NA	1	133	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTGAATTTTGGCAATAAA	NA	False	NA	NA	False	NA	NA	NA	78133468	78137420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_78133500_78137400
27844	chr17	-	2054	13	NIC	ENSMUSG00000023942.16	novel	2033	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_12	731.721082828393	2	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45910544	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45910398
27845	chr6	+	1767	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	7	78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2363.53314110272	1	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTAAATAAAGCTTAAGG	5122	False	NA	NA	False	NA	NA	NA	85429007	85445342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436961_85437044_85438048_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
27846	chr3	-	1362	1	Antisense	novelGene_ENSMUSG00000008604.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	227	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACCCTGCGGTTCTTGC	4879	False	NA	NA	False	NA	NA	NA	88477032	88475670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88475700_88477000
27847	chr4	+	3135	6	NNC	ENSMUSG00000028676.18	novel	3754	6	NA	NA	139	-96	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	623.730198082472	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAAGGCTTTTGTAATC	4845	False	NA	NA	False	NA	NA	NA	135583581	135597123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135594436
27848	chr12	-	2071	11	FSM	ENSMUSG00000021266.17	ENSMUST00000161154.2	1824	11	-247	0	-246	0	multi-exon	FALSE	canonical	3	10	junction_10	739.608714118486	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108859370	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
27852	chr7	+	3173	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	105.065583610924	1	104	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTAGCTGTTCTAGTTT	985	False	NA	NA	False	NA	NA	NA	97130214	97190598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175847_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
27853	chr15	+	2150	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	-81	2	-81	1	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	2206	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGCTAGTCATTTATT	103	False	NA	NA	False	NA	NA	NA	38662095	38692688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
27854	chr18	+	2517	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	-66	5	-62	-5	multi-exon	FALSE	canonical	3	162	junction_13	17.5886149255705	524	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCAACATGTGACTTATT	NA	False	NA	NA	False	NA	NA	NA	75151789	75420030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
27855	chr8	+	2822	1	FSM	ENSMUSG00000064450.3	ENSMUST00000082516.3	86	1	-615	-2121	-615	2121	mono-exon	FALSE	NA	NA	NA	NA	NA	34	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	123829161	123831983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123829200_123832000
27856	chr8	-	1788	15	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	68	-336	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	905.600150537234	4	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATGCTGCAGTACACT	NA	False	NA	NA	False	NA	NA	NA	26337654	26307349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322825_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
27857	chr11	-	2802	11	NNC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-2	-16	intron_retention	FALSE	canonical	3	16	junction_7	163.198529405139	12	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGGTTTGGTGGAAGC	NA	False	NA	NA	False	NA	NA	NA	6576045	6566440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569644_6569971_6571066_6573815_6574284_6575148_6575214_6575964
27858	chr11	+	1961	8	ISM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	-59	8	-7	1	intron_retention	FALSE	canonical	3	485	junction_5	20.0173394223863	1192	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGGTTAAGATCAT	9131	False	NA	NA	False	NA	NA	NA	70538053	70542239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589
27859	chr17	-	2502	6	NNC	ENSMUSG00000078546.9	novel	2221	5	NA	NA	-73	661	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	5.77581163127746	2	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCGTTGTTTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	22128693	22097889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22098623_22098788_22100076_22100938_22101066_22106291_22106340_22127029_22127178_22128534
27862	chr4	+	2821	15	FSM	ENSMUSG00000006215.13	ENSMUST00000142438.8	3478	15	-47	704	-17	1	multi-exon	FALSE	canonical	3	129	junction_3	19.043987749097	337	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTGTGGTCCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	141171947	141194537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
27863	chr18	-	2557	17	NNC	ENSMUSG00000024556.5	novel	2638	16	NA	NA	37	-143	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	183.924534456391	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTGCTTCAGTTACA	408	False	NA	NA	False	NA	NA	NA	73948472	73903116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73945106_73945206_73948374
27864	chr7	-	2469	16	NNC	ENSMUSG00000030754.10	novel	3346	22	NA	NA	57	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	128.550621244015	7	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGTATCTGTGGGATTT	NA	False	NA	NA	False	NA	NA	NA	113853869	113814795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832584_113844691_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
27865	chr8	-	2194	10	NNC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	202.45328679311	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	110419901	110397959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_110399274_110402007_110402057_110403389_110403426_110404176_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
27866	chr3	+	1906	10	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	-42	-5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	383.963250556323	1473	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAGCATCATGTTGAG	NA	False	NA	NA	False	NA	NA	NA	97066050	97083829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075131_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
27867	chr2	+	970	1	Genic_Genomic	ENSMUSG00000026969.4	novel	NA	NA	NA	NA	804	851	mono-exon	FALSE	NA	NA	NA	NA	NA	429	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTACCACACTGAAGGTG	NA	False	NA	NA	False	NA	NA	NA	25112173	25113143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_25112200_25113100
27870	chr2	-	2826	19	NNC	ENSMUSG00000006800.15	novel	4580	21	NA	NA	-16503	-19	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	213.863988449565	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTTTGAATTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	165936542	165915858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165916264_165916492_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397
27872	chr18	+	2289	2	FSM	ENSMUSG00000024528.9	ENSMUST00000237434.2	550	2	-1423	-316	-1423	316	multi-exon	FALSE	canonical	3	351	junction_1	0	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGCATATTTGTATTCT	3070	False	NA	NA	False	NA	NA	NA	52619098	52622044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_52620666_52621322
27873	chr7	-	3630	5	NIC	ENSMUSG00000048012.20	novel	3800	5	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	2	10	junction_4	21.7140507506085	159	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTAATGTTCACTGGCTAT	NA	False	NA	NA	False	NA	NA	NA	44397749	44380915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397652
27874	chr2	-	4358	4	ISM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	1415	55	1225	-55	intron_retention	FALSE	canonical	3	812	junction_2	45.675181687895	5	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAATAAAGTCATTACC	NA	False	NA	NA	False	NA	NA	NA	174313459	174306914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090
27875	chr12	+	2089	17	ISM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	3890	223	-1538	-2	3prime_fragment	FALSE	canonical	3	692	junction_9	70.1344412093659	2	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGGGGTGCCTGTTTACT	NA	False	NA	NA	False	NA	NA	NA	21340248	21364834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
27876	chr9	+	2399	23	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	7	0	intron_retention	FALSE	non_canonical	0	0	junction_8	156.717154545779	1	85	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCGTCTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	108385276	108393135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388418_108388579_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390922_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392432_108392994
27877	chr13	-	3029	13	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	39	-3	intron_retention	FALSE	canonical	3	642	junction_9	42.6699217508331	1	76	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCAGTTCTTCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	55684198	55678231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55683433_55683542_55683618_55683698_55683859_55684108
27879	chr9	+	3494	23	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	39	-20	combination_of_known_junctions	FALSE	canonical	2	3	junction_22	61.283381862965	1	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTGCCTCTTGTACAG	6669	False	NA	NA	False	NA	NA	NA	21232082	21266301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264425_21264977
27880	chr9	-	3036	24	NNC	ENSMUSG00000032580.13	novel	3064	25	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	154.101027427024	117	91	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTCTTTATTGAG	9727	False	NA	NA	False	NA	NA	NA	107648173	107617693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626996_107627596_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
27881	chr13	-	3633	9	FSM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	503	123	503	-123	multi-exon	FALSE	canonical	3	91	junction_5	9.45300878027732	88	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTTTGTATAATTTTA	NA	False	NA	NA	False	NA	NA	NA	94421834	94337940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94421727
27882	chr11	-	3187	20	NNC	ENSMUSG00000020923.18	novel	3286	20	NA	NA	22	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.04609647596	2	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCGGCTGCCGTCTCTGT	9188	False	NA	NA	False	NA	NA	NA	102207479	102196817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102197593_102197685_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
27883	chr9	+	2434	11	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	16	1566	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	116.052401957047	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTAATGTGTTTTGTT	9230	False	NA	NA	False	NA	NA	NA	63509957	63549176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488_63548148_63548297
27884	chr9	-	3211	10	Antisense	novelGene_ENSMUSG00000103970.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.314269680527354	1	150	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGCCCTCACGGCCAAT	NA	False	NA	NA	False	NA	NA	NA	108437364	108394305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108394439_108405786_108406120_108410783_108411823_108418890_108419074_108419645_108419771_108422050_108422173_108433156_108433274_108433610_108433757_108434154_108434247_108436443
27885	chr3	+	1951	13	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	706.36721249566	1	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3811	False	NA	NA	False	NA	NA	NA	88204429	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220717_88225624_88225834_88227766_88228013_88228320_88228453_88228750
27886	chr4	+	3628	12	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	86301	-3	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_1	192.153992997266	1	111	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTTGTACTGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	130477017	130508870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130477074_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
27887	chr5	-	1958	15	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10677	-8024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	52	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTCTCTGCGGGGTCTTC	3876	False	NA	NA	False	NA	NA	NA	129875190	129864468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129869000_129869084_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874491_129874582_129874868_129875063
27888	chr17	+	4126	2	ISM	ENSMUSG00000023908.9	ENSMUST00000233954.2	2902	7	-2	440	-2	-440	intron_retention	FALSE	canonical	3	487	junction_1	0	12	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGTCACCACCCTGCTT	3069	False	NA	NA	False	NA	NA	NA	23945440	23955261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_23945616_23951310
27889	chr13	+	4415	3	NIC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	5318	0	intron_retention	FALSE	canonical	3	1822	junction_2	107	5	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	NA	False	NA	NA	NA	49880912	49887743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_49882241_49883490_49885969_49887134
27891	chr6	-	3072	19	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-1067	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	254.674277567094	2	110	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACTATTTTTAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	6192386	6041237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095148_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6191908_6191990_6192314
27892	chr8	+	2004	16	NNC	ENSMUSG00000042870.16	novel	1769	16	NA	NA	2	-177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	83.1110635769323	40	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAGGATTCTGGGTACCCA	NA	False	NA	NA	False	NA	NA	NA	75760353	75796572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877_75796419_75796483
27893	chr13	+	2627	23	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	11	18	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	173.140391131943	2	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTCTTGACAAAAAAAAAAA	1346	False	NA	NA	False	NA	NA	NA	59733244	59782584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59733274_59733844_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
27894	chr13	+	1915	1	FSM	ENSMUSG00000078139.4	ENSMUST00000104942.2	1924	1	-4	13	-4	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1254	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	21679388	21681303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_21679400_21681300
27895	chr5	-	3593	9	NIC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	10	472	intron_retention	FALSE	canonical	3	1613	junction_5	135.673263301949	9	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	NA	False	NA	NA	NA	117527077	117517209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
27896	chr19	-	3134	10	NNC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	39	-1866	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	150.775362299492	41	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGTCAGCTAACCCAG	NA	False	NA	NA	False	NA	NA	NA	43741400	43723558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43725292_43725684_43725926_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
27897	chr17	+	2871	11	NNC	ENSMUSG00000001576.16	novel	3195	6	NA	NA	7128	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	198.1259447927	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCTGTGACTCTGCCTT	6569	False	NA	NA	False	NA	NA	NA	26787646	26875908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26787778_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26873800_26873928_26874040
27898	chr5	-	2201	5	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	4859.60759732718	7	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548742	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65547016_65547121_65547827_65548081_65548198_65548288_65548336_65548718
27899	chr10	+	2295	3	NNC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	1354	-9	intron_retention	FALSE	canonical	0	0	junction_1	1511	9	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAAAGTACAAACTGTGTT	NA	False	NA	NA	False	NA	NA	NA	128160069	128163047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128160963_128161301_128162543_128162886
27901	chr2	+	4213	19	FSM	ENSMUSG00000058318.16	ENSMUST00000111293.9	3900	19	-322	9	-253	-3	multi-exon	FALSE	canonical	2	5	junction_7	5.58022301426107	70	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGAAAACGCTGTGTAGT	NA	False	NA	NA	False	NA	NA	NA	92014197	92192171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_92014698_92044393_92044435_92045808_92045921_92051816_92051961_92058793_92058827_92061003_92061070_92150573_92150805_92157257_92157510_92158656_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92182045_92182210_92187208_92187365_92189038_92189115_92189450_92189555_92190513
27902	chr10	-	4048	17	Intergenic	novelGene_3414	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	143	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGAGGCCGAGATTCCC	NA	False	NA	NA	False	NA	NA	NA	25399417	25258088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_25258256_25317467_25317954_25319636_25319851_25336687_25336793_25343991_25344037_25345093_25345176_25347320_25347538_25348972_25349060_25354904_25355058_25355563_25355658_25360097_25360277_25364846_25364990_25377719_25378284_25382070_25382170_25383672_25383756_25388872_25388978_25398192
27903	chr3	-	1641	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	122	26	45	-26	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATAAAATCCTTAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	131065628	131027093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
27904	chrX	-	2827	9	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	3369	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	455.548004468245	1	98	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATTTAATGTCATTCT	NA	False	NA	NA	False	NA	NA	NA	23227923	23085539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23086443_23086813_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227728
27905	chr19	+	5320	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	-146	5	2	-5	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	230	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTGTAGTTATGATT	3823	False	NA	NA	False	NA	NA	NA	28967753	28997632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
27906	chr12	+	4618	9	Antisense	novelGene_ENSMUSG00000020988.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	163	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCGCTCTCCAGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	69737229	69771636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_69739271_69746259_69746371_69748047_69748213_69748974_69749144_69752537_69754060_69759394_69759528_69768085_69768238_69768851_69768968_69771427
27907	chr6	-	2223	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	274	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1237.32990346148	1	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8759	False	NA	NA	False	NA	NA	NA	145021636	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953415_144955771_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
27908	chr4	+	2128	9	Antisense	novelGene_ENSMUSG00000028873.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGACGGGCGGCTCCTCG	7704	False	NA	NA	False	NA	NA	NA	124812260	124830655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_124812824_124813405_124814178_124815003_124815094_124815788_124815856_124817507_124817626_124820457_124820533_124824865_124824906_124830147_124830277_124830381
27909	chr11	-	2956	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	-127	13	-14	-8	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	219	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGTATATCATACACAG	NA	False	NA	NA	False	NA	NA	NA	69496782	69490574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
27910	chr11	+	1425	6	NIC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	37	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	264.703305608374	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	7955	False	NA	NA	False	NA	NA	NA	102324964	102327631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102325104_102325225_102325336_102326071_102326318_102326534_102326769_102326849_102327075_102327160
27911	chr5	+	3228	3	NNC	ENSMUSG00000046079.17	novel	492	3	NA	NA	-202	-480	intron_retention	FALSE	canonical	3	13	junction_1	271.5	9	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACATTGCAGTTTTTTGGT	4689	False	NA	NA	False	NA	NA	NA	105848452	105962596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_105848529_105880095_105880241_105959589
27912	chr2	+	2437	9	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	-3	-75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1087.55586063429	1	76	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGTCTAATTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	34662103	34666468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662159_34662240_34662434_34662562_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665082_34665246_34665562
27913	chr5	+	2676	2	FSM	ENSMUSG00000041453.13_ENSMUSG00000077185.3	ENSMUST00000135345.2	632	2	-2061	17	-1	-16	multi-exon	FALSE	canonical	3	8667	junction_1	0	35	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACCAGCACCAGGACTG	NA	False	NA	NA	False	NA	NA	NA	146769954	146772779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146772525_146772673
27914	chrX	-	1694	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAAAAATGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	135642031	135633702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135633856_135633949_135635251_135636294_135636372_135640553_135640644_135641958
27915	chr8	-	2718	9	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38803	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	59.1734737868244	9	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTCTGTTTATTGCTTT	NA	False	NA	NA	False	NA	NA	NA	43633326	43582846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43584611_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43618053_43618097_43633233
27916	chr2	-	5666	7	FSM	ENSMUSG00000052056.15	ENSMUST00000109155.8	5670	7	4	0	4	0	multi-exon	FALSE	canonical	1	2	junction_6	14.599276998841	211	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGGTGTCGTGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	169984594	169950565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_169952576_169954399_169954535_169955980_169957493_169958061_169958179_169960938_169962674_169973576_169973673_169984533
27917	chr6	-	1587	10	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	3	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	3261.48200805844	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446861	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441483_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51444370_51444407_51446650
27918	chr12	-	1037	8	FSM	ENSMUSG00000002679.15	ENSMUST00000161211.8	1059	8	4	18	4	-10	multi-exon	FALSE	canonical	3	360	junction_7	64.9976451692753	1298	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATATATTACTCATCATG	NA	False	NA	NA	False	NA	NA	NA	81641776	81620348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
27919	chr13	+	2968	19	NIC	ENSMUSG00000021686.7	novel	4021	27	NA	NA	-32593	-1	combination_of_known_splicesites	FALSE	canonical	2	5	junction_14	98.2582418872098	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCTCTCCTAATCCTTA	NA	False	NA	NA	False	NA	NA	NA	94576777	94702824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
27920	chr8	+	3906	8	NIC	ENSMUSG00000013878.19	novel	741	5	NA	NA	86	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	26.1799112890407	5	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTAATGTGTTATGTTT	NA	False	NA	NA	False	NA	NA	NA	26609777	26633899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_26609988_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
27921	chr16	-	1848	15	NIC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-2	110	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	1309.6116888262	4	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCGTCTGTTTAATC	NA	False	NA	NA	False	NA	NA	NA	87292763	87280765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288185_87288340_87290594_87290675_87291224_87291316_87292616
27922	chr2	+	2756	15	NNC	ENSMUSG00000026718.18	novel	5000	14	NA	NA	-13	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	62.6970770402238	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTAATTTATATTCTGA	4760	False	NA	NA	False	NA	NA	NA	14078986	14152343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029_14152020_14152083
27924	chr9	-	2897	21	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	1317	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	85.8827689353342	1	93	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTTGTGTGGTGGCCA	NA	False	NA	NA	False	NA	NA	NA	61852701	61824563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834424_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851603_61852622
27925	chr9	-	2568	7	NIC	ENSMUSG00000011114.19	novel	1761	8	NA	NA	-33	-1	intron_retention	FALSE	canonical	3	1493	junction_4	104.613574644976	94	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTATTTGTTTCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	37568566	37560478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_37560800_37561326_37562356_37562585_37562684_37563910_37564466_37565511_37565733_37566317_37566389_37568293
27926	chr13	-	3346	8	NNC	ENSMUSG00000021306.12	novel	3634	7	NA	NA	148	1	intron_retention	FALSE	canonical	3	23	junction_4	69.6806124765134	3	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATTTTGTAGAGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	13568001	13533199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539682_13539762_13539781_13542173_13542397_13548943_13548994_13567709
27928	chr2	+	1283	12	ISM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	10803	2	10803	-2	3prime_fragment	FALSE	canonical	3	2559	junction_1	251.011408650538	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTCTCTGCGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	31371021	31410682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
27929	chr14	-	2983	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	-35	1314	-35	3	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	141	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTTGTCATGTTAGG	7491	False	NA	NA	False	NA	NA	NA	27230452	27204360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
27930	chr8	+	3892	8	FSM	ENSMUSG00000013878.19	ENSMUST00000014022.15	3929	8	40	-3	20	3	multi-exon	FALSE	canonical	3	49	junction_2	13.0243100800474	122	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTTATGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	26609435	26633902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
27931	chr10	-	2882	23	NNC	ENSMUSG00000020256.15	novel	6027	23	NA	NA	18	-1059	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	15.2267299767588	1	44	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAGATACTAGAACCAAGAA	NA	False	NA	NA	False	NA	NA	NA	83369927	83326351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_83326499_83328338_83328539_83329292_83329369_83331732_83331899_83333335_83333435_83335702_83335803_83337757_83337852_83338305_83338394_83339805_83339912_83339989_83340061_83342461_83342613_83343878_83344007_83344476_83344597_83348153_83348302_83349446_83349539_83350318_83350445_83351911_83352047_83354207_83354298_83354496_83354599_83356133_83356300_83358565_83358801_83363168_83363314_83369830
27932	chrX	-	2568	16	NIC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	16	1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_9	31.060085139756	15	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGCTTGGAAGTATTTA	NA	False	NA	NA	False	NA	NA	NA	10082956	10024453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
27933	chr9	+	2412	11	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	5	2	intron_retention	FALSE	canonical	3	217	junction_8	148.387634255689	95	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCTTTTATAGTTTG	9077	False	NA	NA	False	NA	NA	NA	15217514	15228268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
27934	chr7	-	2224	5	NIC	ENSMUSG00000074129.15	novel	734	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	16202	junction_4	893.24111386568	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCAATAAAGACTGTTTG	NA	False	NA	NA	False	NA	NA	NA	44778159	44775370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775962_44776132_44776219_44776414_44776517_44776632
27935	chr9	+	4253	2	Antisense	novelGene_ENSMUSG00002076361.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	78	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATTAAAGAGGCCGGAG	9650	False	NA	NA	False	NA	NA	NA	48399703	48435452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_48403927_48435422
27936	chr6	-	3566	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43538	-261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	80	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACCGGCACCACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	71852232	71808329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849913_71851304
27937	chr1	+	3136	15	ISM	ENSMUSG00000070732.3	ENSMUST00000094698.2	3851	16	7	1699	7	-1197	5prime_fragment	FALSE	canonical	3	84	junction_2	26.5588487886729	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATGTAATCATATGCTTT	4271	False	NA	NA	False	NA	NA	NA	91072831	91096818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_91072892_91077804_91077896_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678
27938	chr2	-	5416	24	Antisense	novelGene_ENSMUSG00000080594.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	15	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGGAAAGAGGCTCAAAG	NA	False	NA	NA	False	NA	NA	NA	10597674	10375321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_10375362_10376217_10376269_10384993_10385044_10398073_10398216_10406797_10406895_10409248_10409487_10442754_10442847_10444677_10444923_10450493_10450592_10461713_10461816_10466133_10466293_10528760_10528839_10535301_10535424_10547741_10547856_10552239_10552284_10561027_10561099_10562373_10562520_10573169_10573282_10580146_10580323_10582339_10582439_10582625_10582940_10583942_10584202_10585352_10585489_10595243
27939	chr14	-	3721	3	FSM	ENSMUSG00000021811.8	ENSMUST00000223950.2	1164	3	29	-2586	-26	-238	multi-exon	FALSE	canonical	3	933	junction_1	10.5	5	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAATGACAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	20438915	20434943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20438280_20438367_20438509_20438671
27940	chr5	+	3972	19	FSM	ENSMUSG00000029098.18	ENSMUST00000068947.14	3976	19	4	0	4	0	multi-exon	FALSE	canonical	3	46	junction_8	8.72982683351794	121	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTTTCTCCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	35740387	35771145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_35740479_35741219_35741320_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
27941	chr5	-	2545	19	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	136.599272000663	1	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGGCCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	30359978	30324427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324974_30325713_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337286_30339051_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
27942	chr7	+	3060	3	Antisense	novelGene_ENSMUSG00000030641.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	62	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACAGTGGGAGAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	92506742	92511696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_92509521_92510607_92510722_92511528
27943	chrX	+	3602	15	NIC	ENSMUSG00000001127.13	novel	2358	16	NA	NA	10	-7	intron_retention	FALSE	non_canonical	1	66	junction_11	90.7056520075924	16	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGGCCTTTGCTTGTT	6329	False	NA	NA	False	NA	NA	NA	20714837	20726751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
27944	chr10	+	1508	9	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	2329.35467189949	95	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	126899401	126903166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902456_126902534_126902797
27945	chr2	-	2060	9	NIC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	180	0	intron_retention	FALSE	canonical	3	745	junction_4	51.9657339022552	6	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTATCTGGTTTTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	130126155	130121232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130122244_130122376_130122472_130122875_130123023_130123132_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090
27946	chr4	-	3033	21	FSM	ENSMUSG00000003644.18	ENSMUST00000137486.3	2296	21	21	-758	21	0	multi-exon	FALSE	canonical	2	35	junction_20	252.994486105923	369	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCGCCCGCTCTTCCTT	1569	False	NA	NA	False	NA	NA	NA	133600329	133574604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133600154
27947	chr8	+	2663	19	NNC	ENSMUSG00000001472.18	novel	2582	18	NA	NA	-16	5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_18	161.529571500502	397	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGATATGGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	124100545	124130554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129543_124129600_124129885
27948	chr11	+	2956	13	FSM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	87	9063	0	-9063	multi-exon	FALSE	canonical	3	251	junction_10	28.6544305280857	345	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACTAGCAAATAAGACAG	NA	False	NA	NA	False	NA	NA	NA	72938695	72971080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
27949	chrX	-	6103	7	NIC	ENSMUSG00000034457.11	novel	1433	8	NA	NA	-8	-10	intron_retention	FALSE	canonical	3	11	junction_6	38.9419083022676	132	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTACGTACAAATGCCTTG	NA	False	NA	NA	False	NA	NA	NA	96420786	96377455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414907_96420706
27950	chr1	-	2865	21	NNC	ENSMUSG00000010453.13	novel	4663	21	NA	NA	9	145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	58.566948870502	1	93	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGTCTGGCATAGTTGG	NA	False	NA	NA	False	NA	NA	NA	36408227	36376508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392748_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404664_36406845_36407116_36408185
27951	chr10	+	3078	22	NNC	ENSMUSG00000033105.13	novel	4667	22	NA	NA	-5	694	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	46.0596084258721	3	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAACCACCTGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	76367435	76389761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_76367509_76367683_76367853_76369346_76369486_76371434_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
27952	chr4	-	2626	3	ISM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	1164	1	468	-1	3prime_fragment	FALSE	canonical	3	1140	junction_2	58	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACAATCTCTTTGTTTTT	2024	False	NA	NA	False	NA	NA	NA	55531302	55527143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_55528301_55529717_55529883_55529998
27955	chr5	+	3239	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	77.4128093764563	185	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7147	False	NA	NA	False	NA	NA	NA	31609779	31639098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31609922_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
27956	chr10	+	2408	14	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-98	-3	intron_retention	FALSE	canonical	0	0	junction_2	97.8393805106013	468	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATATCATGGACTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	75399883	75422022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421334_75421424_75421539_75421714
27957	chr2	+	2706	7	NNC	ENSMUSG00000037523.14	novel	2867	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	69.1005708289656	1	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7257	False	NA	NA	False	NA	NA	NA	131075979	131089945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_131076048_131080655_131080795_131082366_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
27958	chr15	-	4061	13	ISM	ENSMUSG00000042292.19	ENSMUST00000134469.9	4392	15	73127	8	-12523	2	3prime_fragment	FALSE	canonical	3	46	junction_4	7.52172778614654	735	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCCAGTCTGTTGTATT	NA	False	NA	NA	False	NA	NA	NA	81001807	80896489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_80898004_80899549_80899611_80899959_80900113_80900431_80901428_80902151_80902321_80902414_80902681_80904365_80904516_80904953_80905130_80906597_80906760_80907742_80907819_80910862_80910919_80929489_80929556_81001591
27959	chr2	+	3755	3	FSM	ENSMUSG00000086454.8	ENSMUST00000136364.8	677	3	3	-3081	-2	-295	multi-exon	FALSE	canonical	3	45	junction_1	266	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGCCTACACAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	104389526	104401479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_104389756_104390068_104390321_104398205
27960	chr5	-	2404	12	FSM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	-35	-2	-12	0	multi-exon	FALSE	canonical	3	487	junction_1	58.8981471316135	969	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	125418170	125354150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
27961	chr1	+	2692	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	65	637	0	-637	multi-exon	FALSE	canonical	3	212	junction_6	847.519796556727	1	95	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTTTTCAAGCTAGCT	NA	False	NA	NA	False	NA	NA	NA	87141700	87167573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
27962	chr10	+	3147	13	NNC	ENSMUSG00000020250.12	novel	3325	14	NA	NA	-12233	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	282.678102657815	1	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACGCGTGCCTTCTGACT	2485	False	NA	NA	False	NA	NA	NA	82710446	82733542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_82710570_82711457_82711531_82713099_82713220_82715044_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726357_82731861
27964	chr13	+	1379	2	Antisense	novelGene_ENSMUSG00000114547.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTATAGTATTTTTACAA	NA	False	NA	NA	False	NA	NA	NA	112730118	112731720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_112730216_112730438
27965	chr11	+	4525	22	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	-4	-3	intron_retention	FALSE	non_canonical	0	0	junction_7	63.8587230371584	2	204	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTCCAGTCCACTGAAT	2874	False	NA	NA	False	NA	NA	NA	78192476	78213280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204649_78204766_78204989_78205083_78205168_78205279_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206731_78206868_78210292_78210899_78211157_78211279_78211386_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
27966	chr12	+	1431	2	Antisense	novelGene_ENSMUSG00000066632.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGGATGGAAGATTTAA	NA	False	NA	NA	False	NA	NA	NA	10948557	10950313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_10949799_10950123
27967	chr3	+	2342	14	NIC	ENSMUSG00000027998.12	novel	1749	15	NA	NA	6	-2	intron_retention	FALSE	canonical	0	0	junction_11	198.297606713753	12	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCACCTGTGTTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	82962844	82979594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82976372_82976999_82977109_82977929_82978044_82978496_82978691_82979417
27969	chr5	-	3803	11	NIC	ENSMUSG00000041298.16	novel	6157	11	NA	NA	115	1689	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	3.74299345444258	16	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGCTGCTGAAAGTATG	2577	False	NA	NA	False	NA	NA	NA	148865323	148810803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_148813147_148815667_148815795_148825688_148825824_148828438_148828566_148829319_148829479_148830492_148830599_148830958_148831087_148841376_148841540_148855405_148855567_148858046_148858223_148865145
27970	chr4	-	2474	18	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	251.809932716191	1	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120427436	120397064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422481_120422637_120427347
27971	chr7	-	2322	11	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	-8	-6	intron_retention	FALSE	canonical	3	348	junction_8	50.8429936176067	1	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGACTCCTGACTGACTG	NA	False	NA	NA	False	NA	NA	NA	125976387	125969244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
27972	chr8	-	3141	21	FSM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	15	-8	0	5	multi-exon	FALSE	canonical	3	213	junction_17	74.4114238541368	211	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTTGGTCGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	125448707	125398065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
27975	chrX	+	3577	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	65	-724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	326.014148782858	1	196	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799488	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809442_150809527_150809767_150810689_150810949_150811036_150811178_150811957_150812044_150812186_150812395_150816715_150816859_150816962_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
27976	chr17	-	2650	18	FSM	ENSMUSG00000041168.11	ENSMUST00000047226.10	2951	18	301	0	289	0	multi-exon	FALSE	canonical	3	584	junction_15	77.1963747647298	233	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGCCTGAGTCTCAG	1872	False	NA	NA	False	NA	NA	NA	56933586	56921296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56925457_56926171_56926393_56926985_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933480
27977	chr17	-	1233	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-207	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821655	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
27978	chr17	-	2678	6	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	443	1633	multi-exon	FALSE	canonical	0	0	junction_2	101.987058002474	60	27	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACATCATCCCTTCAAT	NA	False	NA	NA	False	NA	NA	NA	37299494	37278453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37280210_37280331_37280614_37281732_37281891_37298307_37298416_37298546_37298823_37299396
27979	chr5	+	2106	11	Antisense	novelGene_ENSMUSG00000029422.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAGAGACCCGGATGGCAC	NA	False	NA	NA	False	NA	NA	NA	123866494	123887455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_123867422_123868518_123868607_123869098_123869333_123871618_123871699_123874621_123874745_123877554_123877613_123877657_123877761_123878735_123878926_123881699_123881744_123883019_123883174_123887350
27982	chr1	-	2282	18	NNC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_17	129.782117118945	13	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGAGTCTTCCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	160898233	160869067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897489_160897595_160898112
27983	chr1	+	1884	13	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	-7	-804	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	665.127739402156	10	39	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGGTTTTATAGATCAGT	876	False	NA	NA	False	NA	NA	NA	58432275	58445708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438262_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193_58444600_58445572
27984	chr9	-	4615	22	NNC	ENSMUSG00000032468.12	novel	4647	22	NA	NA	-6809	-24	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_21	66.1375944973484	154	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCATGGCAACTTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	99457761	99360448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99457471
27985	chr17	+	2418	9	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	17	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	212.357268241518	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATTCTTTCCTTTACTT	5639	False	NA	NA	False	NA	NA	NA	34128488	34134559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132550_34132637_34132701_34132816_34133037_34134316
27986	chr16	+	3087	4	FSM	ENSMUSG00000022750.19	ENSMUST00000144116.2	3266	4	-10	189	-10	-189	multi-exon	FALSE	canonical	3	178	junction_1	142.007824510561	61	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAATTAGTTGATAAAGA	NA	False	NA	NA	False	NA	NA	NA	17577516	17596881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265
27987	chr15	+	1388	2	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98462	-462	multi-exon	FALSE	non_canonical	0	0	junction_1	0	177	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCATTGCCACCATCAAGA	NA	False	NA	NA	False	NA	NA	NA	98829309	98935529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98830297_98935128
27988	chr14	-	2670	9	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5085	210	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	114.076728564594	7	30	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAACTTGTTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	59608004	59584645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
27991	chr15	-	2743	15	FSM	ENSMUSG00000023055.11	ENSMUST00000023818.11	2824	15	75	6	28	-6	multi-exon	FALSE	canonical	3	88	junction_14	14.2851785613836	278	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTAACCATTGTCATGACG	NA	False	NA	NA	False	NA	NA	NA	102630538	102615217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
27992	chr13	+	2343	7	Antisense	novelGene_ENSMUSG00000074863.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCACTAAACAAAGCACC	NA	False	NA	NA	False	NA	NA	NA	62847142	62860559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_62848501_62848582_62849124_62849250_62849303_62853511_62853574_62853937_62854071_62855934_62856023_62860450
27993	chr12	-	1863	11	NIC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	246	junction_1	519.514003661114	745	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860071	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
27994	chrX	-	3208	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	88	403	49	-403	multi-exon	FALSE	canonical	3	187	junction_5	11.6535640709422	1	117	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATATTGGTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	166165657	166129720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
27996	chr7	+	4016	6	Antisense	novelGene_ENSMUSG00000030894.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.4	5	107	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCGGCGATGACGAGAGCA	NA	False	NA	NA	False	NA	NA	NA	105395580	105401225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105395978_105396147_105396275_105396592_105396757_105396868_105397001_105397798_105397854_105398084
27997	chr12	+	2367	12	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	58.2940678552067	471	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGCTCTTGTTTTA	1849	False	NA	NA	False	NA	NA	NA	84363891	84390498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84363984_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
27999	chr15	+	2903	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	13	5	13	-5	multi-exon	FALSE	canonical	3	321	junction_1	13	969	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGACAAGTTTAATAATA	NA	False	NA	NA	False	NA	NA	NA	51740837	51748005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_51741107_51744411_51744587_51745546
28000	chr4	-	2978	3	NIC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	1002	junction_2	6.5	23	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGAGACTCTTTCTTTTT	5958	False	NA	NA	False	NA	NA	NA	139079625	139074758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_139075117_139075231_139077806_139079579
28001	chr10	+	1974	7	NIC	ENSMUSG00000035370.10	novel	4516	6	NA	NA	-186	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	244.454097031642	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGGGCCTTTATCTGTG	NA	False	NA	NA	False	NA	NA	NA	80442462	80451616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80442704_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
28002	chrX	+	1230	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	161	127	97	-127	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAATGTGGGTATCCGCT	NA	False	NA	NA	False	NA	NA	NA	99538057	99559604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
28003	chr2	-	1289	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	33	-943	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	4386.11704522064	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAACTTGATTCCTGGG	3818	False	NA	NA	False	NA	NA	NA	154734669	154714280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726288_154729660_154729728_154730102_154730281_154734609
28004	chr7	+	3812	4	NIC	ENSMUSG00000057101.9	novel	3901	5	NA	NA	-15	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	41.2660743091573	49	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAGAAGCAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	23781333	23807115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_23781664_23797245_23797321_23800872_23800994_23803829
28005	chr18	-	5492	9	Genic_Genomic	ENSMUSG00000118234.2	novel	5267	1	NA	NA	-64007	35574	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	213	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTCAACTGAGCCCAGAG	NA	False	NA	NA	False	NA	NA	NA	65822004	65717156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_65717243_65756052_65758405_65771820_65772001_65777261_65777440_65784630_65784788_65789414_65789702_65815963_65816079_65818593_65818759_65820032
28006	chr10	+	869	5	Antisense	novelGene_ENSMUSG00000097134.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTAACATGGCTACACCC	NA	False	NA	NA	False	NA	NA	NA	66672204	66753582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_66672350_66672531_66672832_66680030_66680219_66751630_66751739_66753454
28007	chr4	+	2046	5	FSM	ENSMUSG00000028480.15	ENSMUST00000030202.14	2320	5	274	0	-17	0	multi-exon	FALSE	canonical	3	229	junction_4	22.0567450001128	702	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	160	False	NA	NA	False	NA	NA	NA	43957674	43979118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462
28008	chr14	-	2924	11	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	300.442074283879	2	98	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTCATTGTTCAGTGGC	6419	False	NA	NA	False	NA	NA	NA	66071368	66056489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071161
28009	chr4	+	3764	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	6	17	6	-17	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	1572	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCATTGGTTCACCAAGAT	NA	False	NA	NA	False	NA	NA	NA	132001691	132023060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
28010	chr2	-	2421	10	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	250	junction_7	29.6498079439161	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTCTAGTAGGATCCAT	9000	False	NA	NA	False	NA	NA	NA	25246372	25242302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
28011	chr15	+	2083	13	NNC	ENSMUSG00000022295.9	novel	569	3	NA	NA	-17038	1	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	418.765513808809	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGCTAGTCATTTATT	730	False	NA	NA	False	NA	NA	NA	38645138	38692688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_38645304_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
28012	chr7	-	3075	18	Genic_Genomic	ENSMUSG00000085118.3	novel	2176	3	NA	NA	-28703	21942	multi-exon	TRUE	non_canonical	0	0	junction_1	0	92	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTAGTTTTGGCCCAGGGC	NA	False	NA	NA	False	NA	NA	NA	120503224	120442789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_120443001_120457562_120457884_120472529_120472636_120475658_120475711_120479031_120479075_120479527_120479697_120483877_120484027_120484640_120484777_120485031_120485160_120485807_120486011_120487081_120487149_120488411_120488491_120488911_120488974_120490817_120490952_120491085_120491275_120494404_120494530_120498588_120498766_120502500
28013	chr7	+	1191	2	ISM	ENSMUSG00000073838.11	ENSMUST00000106392.10	1754	9	7	2059	7	-274	intron_retention	FALSE	canonical	3	648	junction_1	0	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATGGCTGTATCCTGG	NA	False	NA	NA	False	NA	NA	NA	126086556	126087844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126086663_126086759
28014	chr15	-	3219	8	NIC	ENSMUSG00000022570.8	novel	1335	11	NA	NA	0	25	intron_retention	FALSE	canonical	3	182	junction_7	103.576059009792	12	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCACAGTGTAGCCTTCC	8946	False	NA	NA	False	NA	NA	NA	75801575	75796499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75796844_75797133_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75800899_75801501
28015	chr11	+	2487	13	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	-4	-58	intron_retention	FALSE	canonical	2	5	junction_2	182.037694509193	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60345445	60359522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60345570_60347047_60347265_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
28016	chr6	-	4248	17	ISM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	753	-4	431	4	3prime_fragment	FALSE	canonical	3	33	junction_9	6.26716393195519	69	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACATCTTCAGGATTTTC	NA	False	NA	NA	False	NA	NA	NA	97125390	97086980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837
28017	chr2	-	3164	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-33	2343	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	65.9052349969257	23	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	156681773	156672625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156675347_156675537_156675633_156679742_156679834_156680337_156680457_156681635
28018	chr11	-	1823	10	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	1180	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1455.86331776029	1	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTCTGACTTGCTGTTT	9009	False	NA	NA	False	NA	NA	NA	106888133	106879464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882938_106883420_106883519_106887334_106887469_106888063
28019	chr18	+	2153	22	NNC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	-1	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	277.392016946702	1	35	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTTATAACAGCTATT	9	True	NA	NA	False	NA	NA	NA	9958175	9993711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_9958247_9959097_9959172_9959254_9959316_9959610_9959678_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
28023	chr9	-	3732	17	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	2172	1084	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	599.002034637613	2	160	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTACAAAGATTTTTAAGT	NA	False	NA	NA	False	NA	NA	NA	36676474	36642637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646642_36646838_36652784_36652872_36653004_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349
28026	chr4	+	2703	11	FSM	ENSMUSG00000066037.15	ENSMUST00000105850.8	2683	11	-25	5	1	-5	multi-exon	FALSE	canonical	3	160	junction_1	130.381325349914	572	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCACCTATTTCAAATTCA	NA	False	NA	NA	False	NA	NA	NA	136038253	136067987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
28027	chr3	+	1900	16	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	1	187	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	105.894412820822	184	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATAGTGTGTTATTAAC	NA	False	NA	NA	False	NA	NA	NA	95466989	95495169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467035_95467121_95467381_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
28028	chr5	+	2310	8	Antisense	novelGene_ENSMUSG00000104728.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCTCCTCGTAGGTAAAA	24	False	NA	NA	False	NA	NA	NA	43901961	43925546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_43902720_43908204_43908352_43915562_43916287_43917084_43917166_43918046_43918200_43920161_43920283_43922648_43922834_43925405
28029	chr19	-	1715	10	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	55	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	266.796820089514	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAATGGAGTTTGTGATC	8372	False	NA	NA	False	NA	NA	NA	43512989	43488196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488346_43488627_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
28030	chr18	+	7242	46	NNC	ENSMUSG00000024542.10	novel	8093	46	NA	NA	16	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	58.9899761311243	2	207	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGATATTTAAATTGAACTT	150	False	NA	NA	False	NA	NA	NA	67933219	68018224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435_67937565_67940327_67940477_67943223_67943261_67945396_67945518_67946942_67947071_67948924_67949081_67949803_67949932_67951846_67952202_67953359_67953504_67956345_67956411_67957652_67957863_67961421_67961546_67962906_67963035_67967566_67968390_67968479_67968595_67970987_67971157_67974054_67974152_67976206_67976356_67980422_67980654_67983182_67983309_67983480_67983625_67983745_67983807_67984735_67984876_67985027_67985121_67985974_67986094_67987121_67987299_67988355_67988447_67989218_67989396_67991060_67991322_67991925_67992042_67993604_67993715_67995479_67995625_67998660_67998852_67999501_67999626_68001511_68001618_68002400_68002609_68003642_68003723_68004532_68004629_68011026_68011147_68011609_68011732_68013821_68013949_68014354_68014414_68017809
28032	chr1	+	2600	8	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	-1	-7	intron_retention	FALSE	non_canonical	1	46	junction_1	74.1383153026717	8	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCACCTTTGCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	171097907	171104460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171097985_171098152_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
28033	chr11	-	1026	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	68	698	63	472	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	94	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATTTCCAACTGCAGA	NA	False	NA	NA	False	NA	NA	NA	51891243	51877021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
28034	chr7	-	3012	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	279	-5	15	3	multi-exon	TRUE	canonical	0	0	junction_7	258.149054338875	3	89	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGATCTTCTGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	144024467	143989466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
28035	chr7	+	3475	20	NNC	ENSMUSG00000030763.8	novel	365	3	NA	NA	-90501	-31449	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	358	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGACCCAACATGGGCGGA	NA	False	NA	NA	False	NA	NA	NA	122878505	122969251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_122879340_122882999_122883049_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895792_122896719_122896810_122899711_122899828_122902920_122903000_122905597_122905677_122906187_122906302_122907507_122907637_122913636_122913719_122913866_122913935_122917608_122917722_122920810_122920884_122921097_122921213_122922834_122922910_122926461_122926567_122968976
28036	chr13	-	3873	19	NNC	ENSMUSG00000021670.15	novel	4425	20	NA	NA	-12	111	intron_retention	FALSE	canonical	0	0	junction_14	113.351578052154	2	111	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATCTAAGTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	96807395	96786672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_96787142_96787517_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801265_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
28037	chr7	+	2591	14	NNC	ENSMUSG00000038943.17	novel	2912	14	NA	NA	2	-303	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	469.965716992132	1	107	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTCATTAGGCCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	79944228	79965696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950164_79950767_79950893_79954104_79954341_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959142_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
28038	chr11	+	2971	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	0	-3	0	3	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	403	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGCCTCTGGCTCCTTT	7135	False	NA	NA	False	NA	NA	NA	69891420	69900940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
28039	chr4	+	2459	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	112	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147576997_147592031_147592102_147596806_147597356_147597440_147597630_147597965_147598434_147599353_147599747_147599860
28040	chr13	-	3088	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-2	-315	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	102	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACGTAGTTGAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	74210420	74184933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
28041	chr16	-	1155	2	Genic_Genomic	ENSMUSG00000116739.2_ENSMUSG00000081404.2	novel	293	1	NA	NA	-817	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	180	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTTGTGCAAGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	31807095	31805648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_31806311_31806602
28045	chr2	+	2586	14	FSM	ENSMUSG00000033068.17	ENSMUST00000094467.6	2540	14	-46	0	-46	0	multi-exon	FALSE	canonical	3	112	junction_1	18.2695141678424	407	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTGCCTCATTAGTG	NA	False	NA	NA	False	NA	NA	NA	150590915	150613595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
28046	chr11	+	3890	6	NNC	ENSMUSG00000045671.18	novel	4449	7	NA	NA	28571	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	25.0647162361755	184	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTGGCTTTGGGGTATTT	7169	False	NA	NA	False	NA	NA	NA	19933140	19974026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_19933245_19948119_19948298_19955781_19955951_19958412_19958478_19968051_19968190_19970790
28047	chr14	-	3746	6	NIC	ENSMUSG00000040123.18	novel	2455	7	NA	NA	-12	386	intron_retention	FALSE	canonical	3	42	junction_5	17.1464281994822	43	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTCTTCAGACTTGAT	8809	False	NA	NA	False	NA	NA	NA	57049185	57030398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_57031958_57034060_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
28049	chr10	+	3332	15	Antisense	novelGene_ENSMUSG00000020075.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	146	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCGACAGAGAAAGCGGA	NA	False	NA	NA	False	NA	NA	NA	62417383	62438048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62418389_62418834_62418876_62420408_62420544_62421302_62421466_62423244_62423317_62423784_62423905_62424437_62424592_62425557_62425707_62426399_62426547_62427598_62427784_62428789_62428911_62429745_62429922_62430816_62430897_62434028_62434670_62437905
28050	chr17	+	2619	8	FSM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	277	2	-28	-1	multi-exon	FALSE	canonical	3	116	junction_6	36.6951033823983	7	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCGGGCCTCTCATTCTC	569	False	NA	NA	False	NA	NA	NA	34138582	34148264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
28051	chr7	-	1579	12	NNC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	1614	-71	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	701.107093834311	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTATTTTTATTGTG	NA	False	NA	NA	False	NA	NA	NA	89628055	89603938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89627894
28052	chrX	-	2132	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	44	0	44	0	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	885	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTCTGGTTGATCC	NA	False	NA	NA	False	NA	NA	NA	9529198	9520505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
28053	chr14	-	3436	9	NIC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	6	-2	intron_retention	FALSE	canonical	3	140	junction_3	16.0857079421454	8	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATTTCTGAAGTGAAATT	NA	False	NA	NA	False	NA	NA	NA	52542575	52532315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52537563_52537640_52537859_52542344
28054	chr17	-	3344	4	Antisense	novelGene_ENSMUSG00000007038.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGACCCCTCCCCTTGGGG	8727	False	NA	NA	False	NA	NA	NA	35154295	35150298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35151084_35151540_35153158_35153254_35153482_35153580
28055	chr9	+	3268	11	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.7135991518051	124	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTATGTGTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	75375854	75393963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_75375966_75377558_75377649_75379458_75379554_75380085_75380262_75380603_75380689_75383697_75383793_75385260_75385396_75386953_75387087_75388729_75388947_75390380_75390480_75391931
28057	chr3	-	1593	9	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	0	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	889.31784777716	1	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTCTCTGCTGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	108352514	108333888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334317_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
28059	chrX	-	2375	18	Intergenic	novelGene_4086	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTCTCAATCCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	150844795	150812020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150812044_150812186_150812394_150816693_150816879_150816973_150817156_150819099_150819245_150819336_150819472_150820363_150820480_150820583_150820693_150824321_150824462_150829652_150829802_150829890_150830045_150830853_150830963_150841772_150841931_150842352_150842507_150842621_150842780_150843975_150844040_150844286_150844398_150844719
28060	SIRV6	+	1309	10	NNC	SIRV6A	novel	1528	10	NA	NA	-1	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	9260.5176241216	210	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGGGAGTATACTTA	NA	False	NA	NA	False	NA	NA	NA	999	11827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205_11329_11456
28061	chr17	+	2043	4	NNC	ENSMUSG00000071172.14	novel	4010	4	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	847.695437970239	1	89	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAAAAAGGAGAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	29251646	29261859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257683_29260357
28063	chr6	+	2099	13	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	-19	205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	467.691493757726	16	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAAGGGGTTTCTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	71808343	71850267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777
28064	chr9	+	1029	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	714	0	-318	5prime_fragment	FALSE	canonical	3	16882	junction_3	1479.39201511128	9	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGAAGCTGAACCCTTAC	NA	False	NA	NA	False	NA	NA	NA	64080656	64085234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178
28065	chr3	-	1939	10	NNC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_9	318.769664123536	12	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6188	False	NA	NA	False	NA	NA	NA	153618558	153612929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618002
28066	chr11	+	1945	11	NNC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	627	1	intron_retention	FALSE	canonical	2	7	junction_1	349.099713549009	1	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	2261	False	NA	NA	False	NA	NA	NA	120675967	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120676040_120676648_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
28068	chr10	-	3936	6	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	37	-1010	intron_retention	FALSE	canonical	3	182	junction_5	19.6102014268084	2	113	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTCCTTACTGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	115198065	115177656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115197865_115197956
28069	chr12	-	3234	22	Genic_Genomic	ENSMUSG00000099708.2	novel	2000	1	NA	NA	-48080	-464	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	99	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCGCCTAGGCCGCAAAAC	2773	False	NA	NA	False	NA	NA	NA	83728687	83679071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_83679190_83682173_83682260_83685905_83685964_83689171_83689288_83689396_83689518_83691164_83691221_83692905_83693079_83694971_83695028_83698058_83698218_83706195_83706383_83707082_83707134_83707366_83707451_83710750_83711032_83714863_83715081_83715190_83715282_83718680_83718753_83719504_83719658_83721111_83721428_83721811_83722093_83722855_83722961_83724636_83724681_83728278
28070	chr17	+	1874	4	NIC	ENSMUSG00000037805.16	novel	901	5	NA	NA	2	2	intron_retention	FALSE	canonical	3	8265	junction_2	285.568828052985	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTTGGTGTGCCTGTGA	NA	False	NA	NA	False	NA	NA	NA	28547591	28550004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_28547860_28547940_28548022_28548347_28549672_28549803
28071	chr6	-	3194	1	NIC	ENSMUSG00000014748.14	novel	2984	6	NA	NA	392	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTGAGCTGTAGTGTG	NA	False	NA	NA	False	NA	NA	NA	83749065	83745871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83745900_83749100
28074	chr11	-	2388	1	Genic_Genomic	ENSMUSG00000020460.16	novel	NA	NA	NA	NA	-5	368	mono-exon	FALSE	NA	NA	NA	NA	NA	96	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAATGAAGGGAAAATATT	NA	False	NA	NA	False	NA	NA	NA	29497865	29495477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_29495500_29497900
28076	chr7	-	2839	8	NIC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	38	-152	intron_retention	FALSE	canonical	3	296	junction_7	20.0672339287461	2	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAAGAACACATTG	NA	False	NA	NA	False	NA	NA	NA	105401261	105395277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105399538_105400796_105400937_105401188
28077	chr12	-	2593	19	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_18	57.1095168389669	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84664147	84649306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84663895
28078	chr12	-	1763	12	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	710.742354313345	7	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	NA	False	NA	NA	NA	108860063	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832075_108832166_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
28080	chr2	+	3145	10	FSM	ENSMUSG00000026749.12	ENSMUST00000054234.10	10338	10	78	7115	53	11	multi-exon	FALSE	canonical	3	219	junction_1	27.0760246548697	438	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTGGACAATCACTATCC	NA	False	NA	NA	False	NA	NA	NA	38401732	38477503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_38401806_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
28081	chr2	+	1455	6	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	257	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	752.659923205693	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTACCCTTTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	143757496	143785237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780382_143780469_143780613_143781871_143781949_143784046_143784194_143784297
28082	chr1	-	2214	12	NNC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	0	242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	737.285562044992	15	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTGTTTCAGGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	125363284	125320978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333732_125335049_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
28084	chr9	+	4231	25	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	324.731938061568	1	223	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATAGGTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	44290842	44303650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291809_44291908_44292373_44292434_44292548_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300412_44300527_44300769_44300878_44300925_44302132_44302184_44302290
28085	chr15	-	3317	13	NNC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	-794	1	intron_retention	FALSE	canonical	0	0	junction_2	102.908805367773	5	60	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCCATTTACTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	89240656	89235349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89236091_89236185_89236294_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238659_89238766_89239021_89239558_89239614_89240068
28086	chr13	-	3676	12	NNC	ENSMUSG00000032621.9	novel	3934	12	NA	NA	105	-42	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	64.1452380948729	2	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTACCATTTCTCTAATA	9574	False	NA	NA	False	NA	NA	NA	103911009	103878161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103897032_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
28087	chr2	+	2570	4	ISM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	142	1	142	-1	intron_retention	FALSE	canonical	3	60	junction_1	210.252757942012	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAGTCTTTCAGTGGAC	NA	False	NA	NA	False	NA	NA	NA	144113002	144122435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913
28088	chr4	+	3425	11	NIC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	6	-1	intron_retention	FALSE	canonical	3	10	junction_1	31.903134642226	12	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAATGGAGGCTTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	148123539	148140662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_148123590_148126040_148126287_148127881_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
28089	chr4	-	2220	13	FSM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	-4	2	-4	-2	multi-exon	FALSE	canonical	1	98	junction_7	73.9915066447194	1577	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149251168	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
28090	chr9	+	1219	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6160.20075630857	236	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080657	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082517_64082970_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
28091	chr19	+	2122	5	NNC	ENSMUSG00000071653.10	novel	500	5	NA	NA	4	1746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1396.00770055183	14	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8866266	8869991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774_8869463_8869842
28095	chr6	-	1808	7	NIC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	47	-3	intron_retention	FALSE	canonical	3	5197	junction_4	469.194256145576	5	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTCGGGCTGATTGCTG	NA	False	NA	NA	False	NA	NA	NA	125471707	125437231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125441451_125449371_125449475_125471536
28096	chr11	-	2607	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	73.975080263559	2	52	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3638	False	NA	NA	False	NA	NA	NA	54846892	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
28097	chr5	+	3613	14	Antisense	novelGene_ENSMUSG00000041313.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCCACGGCCAGTGCTGC	1401	False	NA	NA	False	NA	NA	NA	148266713	148336674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148266947_148267987_148269352_148270697_148270805_148271291_148271471_148272188_148272401_148273912_148274023_148277348_148277490_148278746_148278965_148279546_148279667_148282612_148282769_148284961_148285118_148288868_148289262_148301973_148302061_148336537
28098	chrX	-	2961	16	NIC	ENSMUSG00000031143.5	novel	2353	17	NA	NA	136	0	intron_retention	FALSE	canonical	3	186	junction_11	24.6978181672435	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGCTTAGGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	7471620	7460047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
28099	chrX	+	3377	7	NIC	ENSMUSG00000067768.13	novel	1744	9	NA	NA	4	0	intron_retention	FALSE	canonical	3	74	junction_1	93.1390835733791	34	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72257942	72266059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72258088_72258379_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72265569_72265685
28100	chr10	-	2425	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	96	33	53	-33	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	100	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGTTGCCAGATACA	NA	False	NA	NA	False	NA	NA	NA	82599882	82584567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
28101	chr16	+	1388	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	-77	663	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCTACCAACTA	NA	False	NA	NA	False	NA	NA	NA	24348066	24349775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_24348357_24348677
28102	chr13	+	2976	4	FSM	ENSMUSG00000030446.18	ENSMUST00000181391.8	2399	4	83	-660	7	660	multi-exon	FALSE	canonical	3	9	junction_1	7.58653778449403	75	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACTCTTGTATTTTAC	NA	False	NA	NA	False	NA	NA	NA	67961941	67975781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_67962016_67970359_67970487_67971218_67971315_67973102
28103	chr8	+	3806	8	FSM	ENSMUSG00000013878.19	ENSMUST00000014022.15	3929	8	118	5	10	-5	multi-exon	FALSE	canonical	3	49	junction_2	13.0243100800474	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTTTTTAATGTGTTA	NA	False	NA	NA	False	NA	NA	NA	26609513	26633894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_26609629_26610467_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
28105	chr2	+	3387	19	ISM	ENSMUSG00000035437.16	ENSMUST00000061179.12	4967	26	-9	22459	-3	-984	5prime_fragment	FALSE	canonical	3	116	junction_1	36.5419174154157	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACATGTGCATTTTTTT	1536	False	NA	NA	False	NA	NA	NA	37333287	37433990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114
28106	chr3	-	3725	22	NNC	ENSMUSG00000004591.17	novel	6207	22	NA	NA	-431	646	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_21	101.001807307419	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAAGGCACCGTGGAGGA	NA	False	NA	NA	False	NA	NA	NA	142588196	142498823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_142499776_142499863_142499945_142500148_142500257_142504663_142504807_142505565_142505643_142506800_142506864_142509314_142509492_142515233_142515326_142515402_142515479_142515584_142515716_142516121_142516249_142516451_142516627_142517287_142517364_142517674_142517819_142526297_142526408_142527279_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174_142559476_142588123
28107	chr11	+	3010	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	17	10	0	-9	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	810	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATAGTATCTAGCCTCC	NA	False	NA	NA	False	NA	NA	NA	87000076	87015451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
28109	chr7	-	3739	4	FSM	ENSMUSG00000059975.16	ENSMUST00000032797.9	2040	4	-250	-1449	0	-2	multi-exon	FALSE	canonical	3	51	junction_2	1.24721912892465	3	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGTGGATATTGCTCGT	5378	False	NA	NA	False	NA	NA	NA	29643180	29632217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915
28110	chr10	-	2752	10	NIC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	-9	-6	intron_retention	FALSE	canonical	3	688	junction_9	110.887441540321	15	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACGCTCTGCCTCTCTGCT	4797	False	NA	NA	False	NA	NA	NA	80895987	80879916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884811_80885086_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
28111	chr8	+	2493	15	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	179	junction_1	101.12005392662	956	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	NA	False	NA	NA	NA	85415917	85426416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969
28112	chr5	-	2842	7	NNC	ENSMUSG00000029213.12	novel	3360	6	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	136.903149058823	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTGTTGCTTGATTT	NA	False	NA	NA	False	NA	NA	NA	72325473	72316354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_72317237_72318250_72319630_72320064_72320218_72322097_72322198_72322693_72322850_72323026_72323147_72325421
28113	chr7	-	3767	21	NNC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	-19	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	332.210817855169	1	164	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGGACTCTGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	28661667	28592681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597403_28597490_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
28114	chr7	+	1590	4	NNC	ENSMUSG00000038503.16	novel	489	4	NA	NA	-68	1098	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	621.56951877217	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGATAGGTATATTCTG	NA	False	NA	NA	False	NA	NA	NA	83541469	83548386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544737_83544971_83546957_83547217_83547502
28115	chr2	+	2757	10	Antisense	novelGene_ENSMUSG00002075206.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	217	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGGGACACGGCGGCCGA	NA	False	NA	NA	False	NA	NA	NA	126470831	126517463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_126472302_126481147_126481265_126488482_126488675_126491993_126492100_126492426_126492541_126494152_126494348_126495474_126495645_126500390_126500498_126504910_126505011_126517277
28116	chr7	-	1946	16	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	501.16459926411	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33929708	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903688_33906984_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
28117	chr8	+	2419	11	FSM	ENSMUSG00000038482.12	ENSMUST00000170909.2	1700	11	5	-724	5	-16	multi-exon	FALSE	canonical	3	905	junction_5	61.5983766019852	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCGCATGGGCATTTTAAAC	3031	False	NA	NA	False	NA	NA	NA	13389678	13428426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
28118	chr5	+	2302	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	-36	2	3	-2	multi-exon	FALSE	canonical	3	138	junction_1	12.1951720866178	353	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACTTTTTCAGAAGCTGA	NA	False	NA	NA	False	NA	NA	NA	107745564	107809702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
28119	chr15	-	1710	11	NNC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	421.275693578445	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTCCCTGTGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	75952758	75942035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942708_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
28120	chr16	-	1945	10	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-17995	10627	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAAATCCTGGGTCTAAG	NA	False	NA	NA	False	NA	NA	NA	38411657	38379057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38379122_38384473_38384661_38393412_38393638_38396103_38396194_38402327_38402487_38405535_38405879_38406580_38406769_38407558_38407742_38408543_38408664_38411271
28121	chr7	-	2928	6	ISM	ENSMUSG00000008435.16	ENSMUST00000119485.8	2119	7	-48	898	0	-1	5prime_fragment	FALSE	canonical	2	7	junction_3	10.0279609093773	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATTTGTCATTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	4448648	4428666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4430802_4433392_4433495_4434420_4434634_4445592_4445749_4447201_4447321_4448445
28122	chr7	+	4072	21	NIC	ENSMUSG00000023118.16	novel	4781	23	NA	NA	-1	593	intron_retention	FALSE	canonical	3	129	junction_5	14.6467573203081	5	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGACTTTAGGGTAGCT	NA	False	NA	NA	False	NA	NA	NA	18758349	18784581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862
28124	chr2	+	1850	11	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3434.55318200199	5	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7492	False	NA	NA	False	NA	NA	NA	75489621	75496465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491930_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
28125	chrX	+	2674	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	43	0	43	0	multi-exon	FALSE	canonical	3	451	junction_8	82.5556781814552	164	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	132960006	132976612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
28126	chr2	+	2398	12	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	23647	-1414	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	46.3049539502047	1	69	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTTTATACAACCCTC	NA	False	NA	NA	False	NA	NA	NA	152092479	152122358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114585_152116030_152116114_152117317_152117467_152118866_152118954_152120888
28127	chr7	+	894	6	Antisense	novelGene_ENSMUSG00000030541.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCGGCCATTTCTTCTGG	1415	False	NA	NA	False	NA	NA	NA	79744593	79747959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_79744952_79745368_79745460_79745544_79745644_79745769_79745883_79747550_79747700_79747875
28128	chr11	+	2691	9	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	106	junction_1	25.4972424979644	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGCTGCTTGTGTGGTTT	3561	False	NA	NA	False	NA	NA	NA	100973440	100977439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100973517_100973824_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
28129	chr2	-	3559	16	NIC	ENSMUSG00000027366.13	novel	5616	15	NA	NA	200	-1911	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	7.10742960257473	137	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGTTTTAGTAACATCT	8479	False	NA	NA	False	NA	NA	NA	126774955	126734221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755219_126755274_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
28131	chrX	+	2074	13	NNC	ENSMUSG00000025287.16	novel	1752	15	NA	NA	7153	0	intron_retention	FALSE	canonical	2	37	junction_2	282.513224862523	13	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTCTCCCATGTTGT	NA	False	NA	NA	False	NA	NA	NA	154052653	154080650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_154052750_154054947_154054994_154056028_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576
28132	chr6	-	2982	13	NIC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	0	358	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	58.64790182853	5	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAGTTGCAGTGTAAATC	NA	False	NA	NA	False	NA	NA	NA	112673631	112596452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_112597866_112605422_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
28133	chr2	+	884	12	NNC	ENSMUSG00000027282.18	novel	2281	12	NA	NA	6	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	943.606629414175	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGACAGTGACATTTCTAT	220	False	NA	NA	False	NA	NA	NA	90677622	90695625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691762_90693933_90694010_90695527
28134	chr6	-	2644	21	NNC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	7	40	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	321.453958600606	4	13	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAATCACTTGTCCTAGAA	NA	False	NA	NA	False	NA	NA	NA	47572268	47507212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47523682_47523765_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47572216
28135	chr10	-	4180	22	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	220	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	133.843157948792	1	148	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAACATACTGCTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	61219089	61155443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61156812_61156859_61157022_61159002_61159159_61174977_61175119_61176709_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179536_61179882_61179979_61182539_61182645_61182816_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674_61186855_61188711_61188815_61191592_61191816_61210031_61210207_61219070
28137	chr9	+	2100	11	NNC	ENSMUSG00000010048.11	novel	2056	12	NA	NA	-8	-16	intron_retention	FALSE	canonical	1	2	junction_8	213.386128883768	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGATACTTAGCCCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	107464916	107470221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468571_107468766_107468905_107469273_107469571_107469673
28138	chr8	+	3198	19	NNC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	136.067895633842	3	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4593	False	NA	NA	False	NA	NA	NA	3681160	3692795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3681279_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686425_3686502_3686575_3687115_3687255_3689507_3690516_3690731_3691207_3691734_3691821_3691897_3692056_3692645
28139	chr9	+	2970	13	Antisense	novelGene_ENSMUSG00000031996.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGAAGCCCGTTCGCCGC	NA	False	NA	NA	False	NA	NA	NA	31067944	31123107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_31069144_31069794_31069893_31072517_31072652_31073054_31073214_31074641_31074712_31075833_31075970_31078856_31079027_31080005_31080213_31081732_31081929_31083228_31083343_31088313_31088440_31089202_31089374_31122917
28140	chr2	-	874	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-7079	20	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGCAAGGACACTGAGCA	3783	False	NA	NA	False	NA	NA	NA	11421920	11413821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414633_11421857
28142	chr2	-	2370	10	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	3	-5	intron_retention	FALSE	canonical	3	252	junction_8	27.7946615355637	20	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCTTGTCTAGTAGGAT	9004	False	NA	NA	False	NA	NA	NA	25246368	25242306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25246155_25246242
28143	chr15	-	3330	16	NNC	ENSMUSG00000042632.18	novel	3365	16	NA	NA	3	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	82.4792499157616	1	116	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCATTGTACAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	79212373	79170428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173345_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190487_79190667_79191512_79191610_79192868_79193057_79195993_79196166_79197147_79197364_79201960_79202211_79211834
28144	chr5	+	2166	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	34	3	3	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	441	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCTTGTGTTGTGCTTGC	NA	False	NA	NA	False	NA	NA	NA	31398241	31408907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
28146	chr15	+	2831	11	FSM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	-147	8	54	-8	multi-exon	FALSE	canonical	3	556	junction_6	54.9377829913076	859	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGACATTTGGACGTG	7191	False	NA	NA	False	NA	NA	NA	85743999	85760766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
28147	chr8	+	2962	4	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-8	2192	multi-exon	FALSE	canonical	3	77	junction_3	482.157881012249	41	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCTTTAATGCTCAGC	NA	False	NA	NA	False	NA	NA	NA	19834753	20048080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036156_20045732
28149	chr11	+	4011	25	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	17700	-86	17700	2	3prime_fragment	FALSE	canonical	3	52	junction_14	14.9210887300119	124	9	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGCTCTGCTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	67235628	67262414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398_67244576_67245472_67245619_67245727_67245819_67246628_67247019_67248933_67249061_67249146_67249266_67251106_67251304_67252074_67252259_67253230_67253397_67254012_67254138_67255287_67255597_67255677_67255882_67257978_67258105_67258382_67258554_67259930_67260036_67260134_67260231_67261745_67261881_67262313
28150	chr2	-	1794	13	Antisense	novelGene_ENSMUSG00000027248.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	1.10554159678513	4	28	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGGCCCGGGCAGACCC	2955	False	NA	NA	False	NA	NA	NA	121268451	121244435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_121244684_121252925_121253007_121255003_121255121_121257070_121257183_121259933_121260065_121262132_121262250_121262754_121262879_121263995_121264181_121264465_121264591_121265338_121265395_121266411_121266481_121266836_121266889_121268074
28151	chr4	+	2815	15	Antisense	novelGene_ENSMUSG00000029036.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGACTCACTGCGCAGGCGC	NA	False	NA	93	True	NA	NA	NA	155825107	155845543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_155825813_155830488_155830594_155831769_155831937_155833125_155833668_155834589_155834714_155834929_155835056_155835324_155835385_155835896_155836047_155838020_155838093_155838337_155838507_155839215_155839284_155840135_155840200_155840519_155840627_155841554_155841625_155845257
28152	chr13	-	1461	12	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2832.08331459836	1	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATCTATTTTTGGTGGTC	4751	False	NA	NA	False	NA	NA	NA	58550330	58539771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541896_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
28154	chr6	-	3060	12	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	0	-24	intron_retention	FALSE	non_canonical	0	0	junction_9	287.694540720415	2	119	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9172	False	NA	NA	False	NA	NA	NA	88495810	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492394_88492485_88492552_88495352_88495421_88495667
28156	chr9	-	2909	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	97.1596624119289	982	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCTTTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	103079328	103065230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103066666_103066812_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
28157	chr16	+	1938	11	ISM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	33	5350	-19	-1652	intron_retention	FALSE	canonical	3	2673	junction_8	243.028475697808	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTTGATGTCTAATGGA	NA	False	NA	NA	False	NA	NA	NA	20470434	20476814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231
28158	chr14	-	4225	15	NNC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	2150	-12	intron_retention	FALSE	non_canonical	0	0	junction_7	58.5228457047994	1	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAAAACAAACCAAGTGT	NA	False	NA	NA	False	NA	NA	NA	70389110	70375628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70379293_70379391_70379622_70379808_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009
28159	chr16	+	2738	9	NIC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	-9	-3	combination_of_known_junctions	FALSE	canonical	1	7	junction_7	243.689575843941	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGATGTTATCTTTCATG	7061	False	NA	NA	False	NA	NA	NA	38379050	38411665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38407742_38408544_38408666_38411273
28160	chrX	+	1193	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	69	-52	69	52	mono-exon	FALSE	NA	NA	NA	NA	NA	7	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTACTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068878	13070071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068900_13070100
28161	chr5	+	516	3	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	1910	212	1754	-212	3prime_fragment	FALSE	canonical	3	6763	junction_2	5422	2	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115699435	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115699578_115700484_115700626_115701341
28162	chr8	-	1579	2	Genic_Genomic	ENSMUSG00000030735.7	novel	1356	1	NA	NA	-68	230	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GATAAAAAAAAAAAAAAAAA	6271	False	NA	NA	False	NA	NA	NA	67968310	67966656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_67967763_67967837
28163	chr2	-	1728	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	99	214	-9	-8	multi-exon	FALSE	canonical	3	2167	junction_3	78.0555357848927	80	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAGAGCTCGGTGGTTT	9417	False	NA	NA	False	NA	NA	NA	167473916	167449771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
28164	chr10	+	2750	4	FSM	ENSMUSG00000020265.17	ENSMUST00000099538.6	1874	4	22	-898	22	-11	multi-exon	FALSE	canonical	3	41	junction_1	598.245397437837	99	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTGACATACAACAGCACA	NA	False	NA	NA	False	NA	NA	NA	77442426	77454154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77442803_77445645_77445775_77449813_77449886_77451981
28165	chr13	+	1930	5	NNC	ENSMUSG00000113566.2	novel	478	4	NA	NA	3	958	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	228.255750201391	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACGTATAAAACTTTGGG	NA	False	NA	NA	False	NA	NA	NA	62245586	62260819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62245653_62246347_62246443_62254561_62254689_62254881_62254943_62259238
28166	chr8	+	1536	1	Antisense	novelGene_ENSMUSG00000030735.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGGGCTGGCGCAGAGA	9871	False	NA	NA	False	NA	NA	NA	67966642	67968178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_67966600_67968200
28168	chr9	+	2875	14	FSM	ENSMUSG00000032078.18	ENSMUST00000156440.8	2984	14	109	0	-20	0	multi-exon	FALSE	canonical	3	619	junction_8	51.2505159448701	499	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGGTACAGCGTCCATT	NA	False	NA	NA	False	NA	NA	NA	46184470	46193941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
28169	chr8	-	777	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	254	-77	254	77	mono-exon	FALSE	NA	NA	NA	NA	NA	11	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592176	103591399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592200
28170	chr2	+	3869	3	ISM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	112	52	8	-52	intron_retention	FALSE	canonical	3	556	junction_1	69.5	19	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAACATTAAAAATTGA	3937	False	NA	NA	False	NA	NA	NA	128971731	128976002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_128971778_128972097_128972239_128972320
28172	chr18	+	2133	4	NIC	ENSMUSG00000073568.3	novel	2257	5	NA	NA	10	4	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	135.151766544134	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTTCAGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	47054891	47067293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_47054960_47059378_47059483_47061585_47061726_47065472
28173	chr8	+	3721	9	NIC	ENSMUSG00000031808.8	novel	2795	14	NA	NA	44	-3	intron_retention	FALSE	canonical	3	129	junction_4	14.0529133990073	31	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACGCCTGCCAGAGCAC	NA	False	NA	NA	False	NA	NA	NA	72023342	72039942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72023533_72032047_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72038137_72038545
28177	chr7	+	3274	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	-17	836	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	261	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGATAAGTCTCTCTGT	2859	False	NA	NA	False	NA	NA	NA	43256615	43268545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
28178	chr5	+	1760	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-10	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1064.7410860143	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGATACATTGAAAATTAAAA	746	False	NA	NA	False	NA	NA	NA	77099613	77115316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77115007_77115232
28179	chr11	-	1797	8	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	7	-44	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	394.78002141208	1912	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGCTACAACTGTGA	NA	False	NA	NA	False	NA	NA	NA	115977791	115969442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972012_115972151_115973101_115973238_115974664_115974774_115977692
28180	chr17	+	1781	6	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	1431.58270456163	2063	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313445	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313670_37314177_37314208_37315365_37315447_37315688_37315796_37316941_37317087_37320310
28181	chr2	-	2500	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	25	4	intron_retention	FALSE	canonical	0	0	junction_4	4360.48423343096	2	119	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTCCATTGCTTTTGTG	3657	False	NA	NA	False	NA	NA	NA	154734830	154713333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719727_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
28182	chr8	+	3412	15	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	523.994196883274	1	151	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCTGTGTTTCTTGGT	8833	False	NA	NA	False	NA	NA	NA	120637558	120684294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667271_120667418_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
28183	SIRV6	+	1927	2	NNC	SIRV6A	novel	783	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	183	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	NA	NA	NA	8993	10968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_9954_10001
28184	chr13	+	1207	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	44	2	2	1	multi-exon	FALSE	canonical	3	157	junction_3	28.0356915377524	617	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTAGTGTTCCTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	34221623	34258055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
28185	chr14	-	5185	23	FSM	ENSMUSG00000033644.6	ENSMUST00000048129.6	4916	23	21	-290	-9	290	multi-exon	FALSE	canonical	3	11	junction_22	14.3650747266008	50	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTGATTGATTGATTT	NA	False	NA	NA	False	NA	NA	NA	70666522	70609635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_70611886_70613387_70613496_70614111_70614366_70627340_70627447_70627976_70628066_70628812_70628930_70629927_70630030_70631459_70631649_70632776_70632891_70635592_70635734_70637183_70637274_70638866_70638952_70639482_70639672_70646359_70646474_70646753_70646835_70647830_70647956_70648582_70648701_70658088_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666391
28186	chr19	-	2338	11	NNC	ENSMUSG00000013662.7	novel	3771	10	NA	NA	0	-395	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	193.434123153078	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTTTTTCAAACCTCCA	NA	False	NA	NA	False	NA	NA	NA	32689697	32650616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32651765_32654110_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678085_32678260_32678919_32679041_32679939_32680039_32684234_32684410_32689665
28187	chr1	-	5436	8	FSM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	94	5	-23	-5	multi-exon	FALSE	canonical	3	60	junction_5	7.62380803664362	93	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGTAGTGTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	165021913	165001910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015537_165015624_165015816_165015904_165021808
28188	chrX	+	2424	8	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1058.27539720364	11	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	False	NA	NA	False	NA	NA	NA	52076987	52110536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52105200_52106411_52108981_52109029_52109199_52109277_52109943
28189	chr2	-	2498	10	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	3	-3	intron_retention	FALSE	canonical	3	250	junction_7	29.4957624075053	40	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTAGTAGGATCC	9004	False	NA	NA	False	NA	NA	NA	25246368	25242304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25243529_25243619_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
28191	chr3	+	2680	13	FSM	ENSMUSG00000028032.14	ENSMUST00000199878.5	2648	13	-31	-1	0	0	multi-exon	FALSE	canonical	1	2	junction_1	13.8531484588242	212	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	NA	False	NA	NA	NA	131270625	131349432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_131270745_131273262_131273440_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
28192	chr12	+	2092	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	-22	-62	-22	57	multi-exon	TRUE	canonical	3	216	junction_9	23.528907060372	817	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCCTCATCATAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	83567217	83588751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
28193	chr14	+	2557	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	31.9189023390625	38	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	55797948	55807521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55798085_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
28195	chr7	-	2869	17	NNC	ENSMUSG00000034951.11	novel	2902	17	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	49.0482861576223	7	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCAAAGGGTGTTTCCTT	8918	False	NA	NA	False	NA	NA	NA	121580940	121522066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562460_121563433_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
28196	chr16	-	1802	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	1120	0	-1120	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGTACAATACACAAGCAAC	6266	False	NA	NA	False	NA	NA	NA	38370584	38346621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
28197	chr2	-	2147	11	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	2	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	181.299779371074	6	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	103315468	103284346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285167_103285422_103285477_103293638_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
28198	chr15	-	3339	6	ISM	ENSMUSG00000022992.18	ENSMUST00000231066.2	1980	9	2986	4	-1825	-3	3prime_fragment	FALSE	canonical	1	385	junction_5	291.994520496533	9	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATCAAAGTGTAAAGTGA	NA	False	NA	NA	False	NA	NA	NA	98429159	98416704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170
28199	chr17	-	863	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	-9	329	-9	-42	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	42	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACCAGTGACGAAGTCA	NA	False	NA	NA	False	NA	NA	NA	24388444	24383168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
28200	chr9	+	2213	16	NNC	ENSMUSG00000032872.17	novel	2644	16	NA	NA	-10	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	229.727800281599	11	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTTTACTCCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	86904129	86959424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924797_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
28201	chr2	+	2564	15	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	544.677680385569	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	661	False	NA	NA	False	NA	NA	NA	26279367	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285901_26286053_26286189_26286589
28202	chr2	+	2307	9	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	418.289896483288	2	79	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8592	False	NA	NA	False	NA	NA	NA	72306525	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315007_72315526_72315657_72316063
28203	chr8	-	511	4	NIC	ENSMUSG00000045128.10	novel	795	4	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	61	junction_2	14009.8312147815	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	NA	False	NA	NA	NA	71350094	71348022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_71348152_71348243_71348354_71348776_71348957_71350002
28206	chr3	+	2022	4	ISM	ENSMUSG00000004127.13	ENSMUST00000162864.8	4064	8	6764	1545	6371	-1545	3prime_fragment	FALSE	canonical	3	147	junction_3	18.8384948679264	1	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACTTTTCTAAAATTCAG	NA	False	NA	NA	False	NA	NA	NA	137856041	137864034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_137856239_137857952_137858103_137860453_137860560_137862465
28207	chr8	-	2580	3	NIC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	3699	-871	intron_retention	FALSE	canonical	3	1260	junction_1	60	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCCAAATCTTGAGTCCA	NA	False	NA	NA	False	NA	NA	NA	85997433	85987891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85990180_85990772_85990953_85997321
28208	chr1	+	4144	24	FSM	ENSMUSG00000026213.16	ENSMUST00000113553.2	4153	24	14	-5	14	2	multi-exon	FALSE	canonical	3	37	junction_10	9.28136128468159	71	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGACTCTGGAAGTCACCT	2777	False	NA	NA	False	NA	NA	NA	75498209	75513581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
28209	chr17	-	3380	18	FSM	ENSMUSG00000024206.16	ENSMUST00000002444.15	3350	18	-29	-1	-24	1	multi-exon	FALSE	canonical	3	81	junction_12	62.8192882463543	430	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGGTGTCCGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	57138037	57082898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57106249_57106325_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
28210	chr11	-	1620	6	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTCGCCTGGTACACC	NA	False	NA	NA	False	NA	NA	NA	75656388	75623893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623918_75642704_75642906_75646398_75646507_75647642_75647847_75650114_75650253_75655443
28211	chr15	-	1646	2	Antisense	novelGene_ENSMUSG00000022394.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGAGAGTGTGCTCATTGG	NA	False	NA	NA	False	NA	NA	NA	81552918	81548138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_81548223_81551356
28212	chr17	+	1070	8	ISM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	60	932	1	-901	5prime_fragment	FALSE	canonical	3	2129	junction_1	78.592464716435	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCATCGCCCTGGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	35460781	35471751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722
28213	chr7	+	2676	5	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	3	-3	intron_retention	FALSE	canonical	3	118	junction_1	24.712092181764	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACAGTCTGAGGTAGGT	622	False	NA	NA	False	NA	NA	NA	101872262	101887764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101886438_101886607
28214	chr8	-	1712	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	57	3	13	-3	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43759960	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
28215	chr11	+	1747	9	NNC	ENSMUSG00000034285.16	novel	373	3	NA	NA	188	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	551.867737777812	6	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4824192	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824428_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839968_4843278
28216	chr6	+	1469	1	NIC	ENSMUSG00000030016.15	novel	9033	27	NA	NA	-3690	-4449	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAACCTCCCATCATGAAA	NA	False	NA	NA	False	NA	NA	NA	83952901	83954370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83952900_83954400
28217	chr13	+	4410	13	FSM	ENSMUSG00000021385.11	ENSMUST00000220447.2	4421	13	-1	12	-1	-12	multi-exon	FALSE	canonical	3	101	junction_9	16.41053184865	150	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACAAAGTGCACTTTATG	NA	False	NA	NA	False	NA	NA	NA	49574723	49618037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49595428_49595488_49596897_49596971_49599778_49600053_49602712_49602864_49603456_49603560_49612088_49612169_49615009
28218	chr2	+	1743	3	NIC	ENSMUSG00000038900.18	novel	1417	4	NA	NA	-5	0	intron_retention	FALSE	canonical	3	2580	junction_2	1732.5	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5797	False	NA	NA	False	NA	NA	NA	32851726	32854057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32852135_32852585_32853866_32854002
28219	chr2	+	3531	7	NNC	ENSMUSG00000027589.15	novel	3569	7	NA	NA	-16	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	27.6028380183391	132	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTATTCTCAGTATTGCTT	NA	False	NA	NA	False	NA	NA	NA	181479689	181499240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181479778_181482947_181483132_181484167_181484499_181486188_181486292_181488260_181488433_181493378_181493503_181496711
28220	chr15	+	2865	23	FSM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	20	-6	20	0	multi-exon	FALSE	canonical	0	0	junction_1	24.5577830991277	294	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	1616	False	NA	NA	False	NA	NA	NA	98006366	98030328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
28221	chr11	-	2716	2	ISM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	2812	112	2778	-112	3prime_fragment	FALSE	canonical	3	630	junction_1	0	1	97	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGTTGTTAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	11756147	11750399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_11753064_11756095
28222	chr3	+	6377	25	Intergenic	novelGene_3129	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	64	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGAACCAACAGAGGAGC	NA	False	NA	NA	False	NA	NA	NA	63603891	63806811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_63606902_63609204_63609559_63611554_63611630_63611934_63612084_63615136_63615225_63616943_63617063_63618380_63618495_63618589_63618765_63623397_63623502_63626607_63626701_63628593_63628663_63630159_63630333_63639037_63639145_63648039_63648214_63651897_63652021_63660548_63660752_63662671_63662767_63674877_63675048_63681060_63681192_63688732_63688979_63691412_63691559_63778076_63778195_63792290_63792384_63793350_63793437_63806649
28223	chr2	-	1573	3	Antisense	novelGene_ENSMUSG00000015932.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATGAGAAATGTGCAAA	NA	False	NA	NA	False	NA	NA	NA	143785231	143780303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_143780620_143781876_143781947_143784044
28224	chr6	-	1749	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	126	681	126	-681	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	1	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCCCATGCAGCCCTGC	8611	False	NA	NA	False	NA	NA	NA	145021784	144945564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
28226	chr2	-	2305	6	NNC	ENSMUSG00000036160.14	novel	2971	5	NA	NA	-23	-386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	145.114575422319	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCGGGTCAGAGCTTGGG	NA	False	NA	NA	False	NA	NA	NA	26792825	26781169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792200_26792254_26792635
28227	chr17	-	3179	11	NIC	ENSMUSG00000024335.21	novel	4520	14	NA	NA	227	3	intron_retention	TRUE	canonical	3	88	junction_9	143.497073140883	7	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTAGTTTTCTTAGTG	8633	False	NA	NA	False	NA	NA	NA	34335942	34331000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335571_34335664_34335881
28228	chr4	-	2888	15	NIC	ENSMUSG00000028453.11	novel	2974	14	NA	NA	-50	-1	combination_of_known_junctions	FALSE	canonical	3	29	junction_14	28.3574127371109	115	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGTTGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	43010556	43002343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001_43010173_43010255
28229	chr17	-	860	1	NIC	ENSMUSG00000073436.12	novel	1521	8	NA	NA	-2	-457	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAAATGAGCAGGAACAG	1887	False	NA	NA	False	NA	NA	NA	25114038	25113178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25113200_25114000
28230	chr2	+	2580	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	453	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	21	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAGTTTATACTTTACA	3437	False	NA	NA	False	NA	NA	NA	91541261	91552343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91541411_91542424_91543211_91550698
28231	chr14	-	3110	23	NNC	ENSMUSG00000025557.11	novel	3121	23	NA	NA	-65	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9.63507710108236	6	64	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATATGTGTTTGTGTGTCT	3073	False	NA	NA	False	NA	NA	NA	121742729	121697030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_121698186_121699878_121699987_121702314_121702440_121703352_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
28232	chr9	-	3259	23	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	-50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	85.0018959438528	1	105	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCTTTATATATGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	61854019	61824611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832827_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836981_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
28234	chr1	+	1800	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	487	0	-8	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	2044	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTGGGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	90531189	90541063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
28235	chr3	-	2189	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	19061	1899	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	55.5	3	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	152912359	152909103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_152910824_152910864_152911229_152912254
28236	chr4	+	1210	2	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	3044	5	NA	NA	3	-36815	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTTGTTTTTAAGCCTG	5022	False	NA	NA	False	NA	NA	NA	145241456	145312970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145241569_145311872
28237	chr15	+	1907	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	223	5	223	-5	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	1598	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513452	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
28238	chr14	+	2729	12	NNC	ENSMUSG00000022070.8	novel	3834	13	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	93.6248006982398	411	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCGTTTTCCTTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	99283835	99311975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310212_99311081
28239	chr9	-	1644	12	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-13	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2098.630367999	5	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAAATTTCAAGAGATT	NA	False	NA	NA	False	NA	NA	NA	89996676	89973735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977252_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
28240	chr10	+	1904	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	26	-139	0	139	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	227	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAACTGAACCCTGCAC	NA	False	NA	NA	False	NA	NA	NA	126877826	126882373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
28241	chr3	-	4049	20	FSM	ENSMUSG00000027778.16	ENSMUST00000169064.8	4064	20	38	-23	-7	-3	multi-exon	FALSE	non_canonical	3	27	junction_10	3.97847393451879	67	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAAGTCTGTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	68911865	68799834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831_68901916_68911764
28242	chr7	+	3272	11	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	-4	-3	intron_retention	FALSE	canonical	3	6	junction_1	36.3600055005496	7	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTATGTGTTGCCGATCT	NA	False	NA	NA	False	NA	NA	NA	101714713	101732966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_101715012_101719032_101719199_101720393_101720569_101722381_101722524_101725029_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
28243	chr9	-	3494	11	NIC	ENSMUSG00000031935.10	novel	3964	12	NA	NA	-4	127	intron_retention	FALSE	canonical	3	139	junction_6	15.8268758761797	2	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTAAAAAAATCTCCCCAA	NA	False	NA	NA	False	NA	NA	NA	15191203	15173175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
28245	chr7	+	4324	20	FSM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	10	-18	9	-5	multi-exon	FALSE	canonical	0	0	junction_17	7.64481610612047	74	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGCAAGTGTCCTGATA	NA	False	NA	NA	False	NA	NA	NA	100757991	100933607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
28247	chr11	+	3143	5	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	10	-3	intron_retention	FALSE	canonical	0	0	junction_2	98.720248682831	8	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGGCATGTTTTTAGATA	NA	False	NA	NA	False	NA	NA	NA	71933290	71938193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_71933361_71933842_71936085_71936504_71936601_71937165_71937220_71937512
28248	chr12	-	2352	5	NIC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	1115	intron_retention	FALSE	canonical	3	1835	junction_4	114.832486692573	22	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGATCTTTATTCCAGCT	NA	False	NA	NA	False	NA	NA	NA	108860063	108839924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
28249	chr13	+	2518	11	NNC	ENSMUSG00000038080.18	novel	4987	21	NA	NA	18324	20898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	456	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATCAACAAGATTTTCAA	9754	False	NA	NA	False	NA	NA	NA	47238257	47259653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_47239556_47239900_47239966_47241496_47241650_47241952_47242092_47251630_47251820_47252818_47252938_47253647_47253743_47255096_47255208_47255447_47255551_47259047_47259188_47259547
28250	chr9	-	4310	25	NNC	ENSMUSG00000032340.9	novel	5414	28	NA	NA	2961	-38	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_24	32.5663585365839	4	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCATCACTGTGAGATTA	NA	False	NA	NA	False	NA	NA	NA	58886430	58783875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838459_58863241_58863363_58865180_58865336_58885907_58886045_58886288
28251	chr16	+	3417	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	22	8	22	-8	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	433	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCTACTTTGCTTGACT	1406	False	NA	NA	False	NA	NA	NA	17223871	17248683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
28252	chr7	-	3034	22	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-7	-1	intron_retention	FALSE	non_canonical	0	0	junction_5	50.303748569877	1	57	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGAGCCTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	140697693	140681138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683899_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140690288_140690426_140690543_140690670_140691067_140691143_140697626
28253	chr2	+	755	1	Antisense	novelGene_ENSMUSG00000081406.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGACAGCCGGTGGCGGG	NA	False	NA	NA	False	NA	NA	NA	75021370	75022125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_75021400_75022100
28255	chr7	-	3041	23	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	35	-1	intron_retention	FALSE	canonical	3	82	junction_9	28.5868619768933	1	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCATGATGTAGATCCA	NA	False	NA	NA	False	NA	NA	NA	140697651	140681131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
28256	chr15	-	1653	7	Antisense	novelGene_ENSMUSG00000022385.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCCCAACTGAGAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	85760734	85751683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_85751801_85752878_85753258_85755708_85755780_85757837_85758076_85759173_85759419_85759736_85759952_85760346
28257	chr1	-	3288	9	NIC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	-16	-211	intron_retention	FALSE	canonical	3	1166	junction_4	87.1040146893356	26	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTCCTGTGTCTGCGTG	NA	False	NA	NA	False	NA	NA	NA	92401505	92367211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_92367630_92379732_92379842_92388101_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
28258	chr15	+	3838	9	NIC	ENSMUSG00000022434.9	novel	596	5	NA	NA	-1	-5	intron_retention	FALSE	canonical	0	0	junction_1	75.1131438231685	4	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCTGTGTGCTCAGT	6485	False	NA	NA	False	NA	NA	NA	84913147	84947026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_84913265_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84944391_84945732
28259	chr4	+	1811	1	NIC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	72	-416	mono-exon	FALSE	NA	NA	NA	NA	NA	9	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGATGGACAATTCAAAGAT	NA	False	NA	NA	False	NA	NA	NA	116542867	116544678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116542900_116544700
28261	chr5	-	1715	1	FSM	ENSMUSG00000104559.2	ENSMUST00000199149.2	775	1	-70	-870	-70	870	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTGTGTGTCCGTCCG	NA	False	NA	NA	False	NA	NA	NA	111536225	111534510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_111534500_111536200
28263	chrX	+	4701	9	NNC	ENSMUSG00000035246.17	novel	4888	8	NA	NA	325	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	28.2267603525449	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTGCCTTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	92719032	92793557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_92719083_92720690_92720829_92745690_92745791_92750163_92750281_92761390_92761543_92763784_92763864_92775282_92775426_92778370_92778560_92789824
28264	chr9	+	2110	9	NNC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	-452	-2	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_1	534.726273433427	6	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTCTGATTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	65536477	65567806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65536750_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
28265	chr17	+	2767	7	Antisense	novelGene_ENSMUSG00000071267.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	80	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCGGCTCCCCTAGCCC	NA	False	NA	NA	False	NA	NA	NA	22146503	22181449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_22148471_22149346_22149466_22151964_22152095_22160706_22160832_22172868_22173027_22180264_22180322_22181238
28266	chr6	-	1948	7	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-10	0	intron_retention	FALSE	canonical	3	38	junction_6	659.753341956085	33	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	124942381	124935778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
28267	chr7	+	2078	12	FSM	ENSMUSG00000030796.18	ENSMUST00000033060.14	2140	12	39	23	1	2	multi-exon	FALSE	canonical	3	157	junction_1	60.1724793633042	514	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGCCAA	5469	False	NA	NA	False	NA	NA	NA	44865215	44883045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44865257_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
28268	chr2	+	1974	2	NIC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	225	-438	intron_retention	FALSE	canonical	3	1158	junction_1	0	2	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	164679326	164681501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164680870_164681070
28269	chr15	-	6058	3	NIC	ENSMUSG00000075511.10	novel	4969	3	NA	NA	2	183	intron_retention	FALSE	canonical	3	28	junction_1	13	142	76	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTTGTTTATCAAAGAAAC	252	False	NA	NA	False	NA	NA	NA	83251476	83237864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_83243152_83249229_83249715_83251190
28270	chr5	-	2220	11	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	-76	745	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.58776800174	6	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGTCCCAAATGGTCAC	NA	False	NA	NA	False	NA	NA	NA	4154497	4132534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4132642_4132713_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
28271	chr2	+	4787	34	Antisense	novelGene_ENSMUSG00000098464.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	476	25	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGAAGTCCCGGCGTTCC	NA	False	NA	NA	False	NA	NA	NA	113931652	114005786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_113932211_113934484_113934599_113936280_113936455_113938583_113938669_113940362_113940538_113942964_113943135_113943699_113943888_113947003_113947141_113949156_113949378_113950388_113950524_113951682_113951799_113956374_113956479_113957432_113957507_113957993_113958141_113961015_113961257_113963446_113963615_113965128_113965304_113967352_113967533_113971352_113971491_113973467_113973595_113976111_113976212_113977369_113977474_113979419_113979534_113980879_113980996_113981998_113982071_113985448_113985522_113986726_113986828_113988019_113988089_113989349_113989492_113992044_113992168_113996675_113996708_114000505_114000545_114003167_114003229_114005572
28273	chr5	-	2446	13	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	743	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	426.883953460683	1	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGGAAGCTACAGACC	NA	False	NA	NA	False	NA	NA	NA	24781722	24770365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771026_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516
28274	chr9	+	2575	7	NIC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	1650	junction_6	108.336538414127	16	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGGTTATGGTGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	54858085	54865309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54863672_54864094_54864219_54864918
28275	chr7	+	2646	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	39	128	-2	-101	multi-exon	FALSE	canonical	3	335	junction_1	308.5	3	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTAATTTTCTGGAGC	269	False	NA	NA	False	NA	NA	NA	3339097	3347737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3339156_3341727_3341816_3345237
28277	chr9	-	2999	10	NIC	ENSMUSG00000061559.16	novel	1187	11	NA	NA	5	2	intron_retention	FALSE	canonical	3	455	junction_9	219.907275633489	44	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTGTGAACGTGCTGT	5428	False	NA	NA	False	NA	NA	NA	54641796	54624440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641758
28278	chr7	-	2083	12	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-21	-12	intron_retention	FALSE	canonical	3	1078	junction_5	54.0114772008828	749	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	NA	False	NA	NA	NA	16761755	16738576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
28280	chr4	+	3160	14	ISM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	1	7518	1	1272	5prime_fragment	FALSE	canonical	3	458	junction_7	56.6386866761789	8	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCAAGCTTTTTTTTTT	5273	False	NA	NA	False	NA	NA	NA	108436651	108464512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434
28281	chr5	-	2083	6	Genic_Genomic	ENSMUSG00000104559.2	novel	775	1	NA	NA	-71	37999	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTTGGGATCTAAACCG	NA	False	NA	NA	False	NA	NA	NA	111536226	111497381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_111497442_111528023_111528161_111530846_111530977_111533385_111533471_111534366_111534781_111534969
28282	chr6	-	2551	19	NNC	ENSMUSG00000029701.16	novel	4465	19	NA	NA	319	25	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_6	52.955140577476	22	23	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCATATTTTGTTATGGA	-6	True	NA	NA	False	NA	NA	NA	29164686	29125115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135512_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
28285	chr11	-	1871	12	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	-29	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	342.349104118748	1	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCCTTTCTGCTTACTCG	NA	False	NA	NA	False	NA	NA	NA	60701946	60679727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688545_60689444_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
28286	chr19	+	4398	4	Antisense	novelGene_ENSMUSG00000034321.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	118	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGCCTTCCTCCAAGTT	-8	True	NA	NA	False	NA	NA	NA	41912015	41921569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_41912526_41913147_41913677_41914968_41916551_41919792
28287	chr2	-	2725	5	NIC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	10	0	intron_retention	FALSE	canonical	3	1877	junction_4	26.2963875846094	46	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCCTCTGTGGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	90735036	90724977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90734833_90734927
28288	chr2	-	2529	5	NNC	ENSMUSG00000036160.14	novel	2971	5	NA	NA	12	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	121.463986432193	5	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGTGTTCGTATTTG	NA	False	NA	NA	False	NA	NA	NA	26792850	26780783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26782738_26782878_26783057_26789389_26789438_26789740_26789945_26792705
28290	chr14	+	2012	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	135	1253	-5	-84	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	1	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTAGGCTAGCAAGAGC	9026	False	NA	NA	False	NA	NA	NA	55777857	55786221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
28291	chr7	+	2265	7	NNC	ENSMUSG00000058454.16	novel	2815	9	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	155.482850072497	1	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATGTTGTACTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	143390393	143402146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400819
28292	chr12	-	2553	5	NNC	ENSMUSG00000092465.3	novel	1240	6	NA	NA	285	-63911	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	15.2561463023924	50	31	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAACTCCTTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	23365074	23335138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_23337031_23337200_23337544_23338874_23338936_23339135_23339263_23364944
28293	chr12	-	2780	7	NNC	ENSMUSG00000054302.16	novel	2658	7	NA	NA	4	352	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	149.586559853781	932	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTATTGTTCATGTCC	NA	False	NA	NA	False	NA	NA	NA	54742662	54718087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_54718730_54719168_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
28294	chr18	-	1687	7	NNC	ENSMUSG00000024587.11	novel	1492	13	NA	NA	-7	-6	intron_retention	FALSE	non_canonical	0	0	junction_6	1776.06713618101	2	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTTTAATTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	64649558	64633294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638394_64649486
28295	chr19	-	3857	10	NIC	ENSMUSG00000024826.16	novel	2406	12	NA	NA	-6	1	intron_retention	FALSE	canonical	3	642	junction_2	71.5476186074356	23	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCTGGACAGTTTGTC	1330	False	NA	NA	False	NA	NA	NA	5962841	5947413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
28296	chr6	-	2721	20	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-55	38	combination_of_known_junctions	FALSE	canonical	3	63	junction_19	236.697874212063	400	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATCACTTGTCCTAG	NA	False	NA	NA	False	NA	NA	NA	47572330	47507214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47572117
28297	chr2	-	3436	24	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	13	130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	245.193554191405	1	159	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGCCCCCAACTCCAAG	NA	False	NA	NA	False	NA	NA	NA	127673766	127642905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646210_127646419_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649921_127650881_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127666007_127669209_127669418_127671357_127671497_127671597_127671658_127673639
28298	chr18	-	2133	10	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	10	1317	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	560.785450049887	2070	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATGACCTCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	77855470	77843949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77844971_77845182_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848761_77849677_77849817_77851772_77851909_77854563_77854739_77855419
28299	chr17	-	3222	13	Genic_Genomic	ENSMUSG00000118071.2	novel	2911	1	NA	NA	-41004	-2037	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGTCACGCCGACGCCG	NA	False	NA	NA	False	NA	NA	NA	31825670	31783792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_31783864_31800890_31801023_31802667_31802776_31807431_31807560_31809574_31809746_31811072_31811247_31814195_31814297_31815767_31815866_31818486_31818617_31821758_31821834_31822158_31822332_31823724_31823952_31824036
28300	chr5	-	2583	9	FSM	ENSMUSG00000028959.15	ENSMUST00000149085.8	2552	9	-30	-1	-9	0	multi-exon	FALSE	canonical	3	1095	junction_1	118.721049102508	12	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	24650215	24646036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
28301	chr8	+	2367	20	NNC	ENSMUSG00000032939.15	novel	2707	22	NA	NA	5	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	270.636062113576	1	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTCTTTTAAACATTCT	NA	False	NA	NA	False	NA	NA	NA	94941209	95041474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95031977_95033254_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
28303	chr1	+	2951	17	NNC	ENSMUSG00000039354.17	novel	3059	17	NA	NA	0	-31	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	26.105480147854	17	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCTCATTGAAATAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	72622409	72672262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72622598_72624873_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
28304	chr4	+	3138	13	NNC	ENSMUSG00000034042.17	novel	3588	12	NA	NA	60	-186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	118.189466535728	1	91	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCAGTTTGGATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	116414914	116450893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116415026_116426360_116427077_116427273_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444574_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
28305	chr14	-	3512	7	NNC	ENSMUSG00000022120.5	novel	3420	6	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.2502408471136	154	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTTGATGTCATCAT	NA	False	NA	NA	False	NA	NA	NA	104760089	104714971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_104717734_104738859_104738931_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
28306	chrX	+	2813	3	ISM	ENSMUSG00000002014.13	ENSMUST00000130738.8	2119	5	-212	-15	-16	0	intron_retention	FALSE	canonical	3	1523	junction_2	66.5	15	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5416	False	NA	NA	False	NA	NA	NA	72830617	72834432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_72832560_72833405_72833481_72833636
28307	chr12	+	1948	9	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	117.447594696528	20	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	85157631	85180862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168882_85179519
28308	chr10	+	3001	10	NIC	ENSMUSG00000019823.18	novel	3292	23	NA	NA	-433	746	intron_retention	FALSE	canonical	3	163	junction_8	21.9544984001001	1	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTGCTCTGCTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	41357269	41361967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41357388_41357585_41357702_41357896_41358286_41358599_41359628_41359712_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761
28309	chr11	+	2249	5	NIC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	5	-14	intron_retention	FALSE	canonical	3	581	junction_1	30.4415423393756	18	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTTTGAATACTGT	NA	False	NA	NA	False	NA	NA	NA	68936520	68942476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68936835_68938610_68939471_68939556_68939706_68941127_68941303_68941725
28310	chr17	-	4019	7	FSM	ENSMUSG00000024142.16	ENSMUST00000234147.2	850	7	-786	-2383	0	0	multi-exon	FALSE	canonical	3	68	junction_2	9.51752769017949	3	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGGCCGATTGCTTTC	9618	False	NA	NA	False	NA	NA	NA	24698021	24692524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084
28311	chr13	+	4149	8	NIC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	824	junction_5	87.3725310591004	27	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTATATATTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	85337563	85361019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85360034_85360858
28313	chr17	-	1964	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	-7	-3	-7	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	23	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	NA	False	NA	NA	NA	46991847	46985475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
28314	chr1	+	3182	22	NIC	ENSMUSG00000053333.16	novel	2969	21	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	0	0	junction_5	29.7949911327162	164	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTGTAGATGCCATGG	NA	False	NA	NA	False	NA	NA	NA	86631549	86977818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86740233_86740312_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
28315	chr5	-	2286	2	Genic_Genomic	ENSMUSG00000080935.4	novel	1293	1	NA	NA	-57	997	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	75	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAGGGTGAAC	1738	False	NA	NA	False	NA	NA	NA	138363871	138361524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_138361678_138361738
28316	chr3	+	3276	19	FSM	ENSMUSG00000027550.15	ENSMUST00000108370.9	3359	19	64	19	-27	-19	multi-exon	FALSE	canonical	2	3	junction_18	19.4050394371038	12	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAAAAGTCTACATTTAT	NA	False	NA	NA	False	NA	NA	NA	14598911	14637699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14637463
28317	chr8	-	4060	10	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	38	junction_9	45.5609752873641	12	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTATATGTGCCGATTT	NA	False	NA	NA	False	NA	NA	NA	57003909	56984557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097
28318	chr5	-	2972	20	NNC	ENSMUSG00000037364.13	novel	2988	20	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	312.705272193511	1	84	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8275	False	NA	NA	False	NA	NA	NA	137305918	137293976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296056_137296250_137296489_137296569_137296652_137296711_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300929_137301168_137301303_137305307_137305448_137305685
28319	chr11	-	2315	11	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	293.919989112684	15	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8467	False	NA	NA	False	NA	NA	NA	69572735	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69571029_69571677_69572488
28320	chr19	-	2203	11	NNC	ENSMUSG00000024982.11	novel	2168	11	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	164.730567898007	50	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGTTTTCACCAAAAAG	7445	False	NA	NA	False	NA	NA	NA	55304458	55286746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300272_55301620_55301713_55302732_55303205_55304227
28321	chr5	+	2055	9	ISM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	1492	3	1492	-3	intron_retention	FALSE	canonical	3	1539	junction_8	108.281389790675	14	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGTGCTTCCAGATCT	NA	False	NA	NA	False	NA	NA	NA	21991772	22008782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523
28322	chr8	+	1800	5	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	-21	1089	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1212.84734715462	13184	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACAAAGATCTTGTAGGG	NA	False	NA	NA	False	NA	NA	NA	112667368	112681333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946_112679942_112680873
28323	chr8	-	2382	7	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	-104	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	194.263280684287	53	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATCTGTCTCTGAAACTG	NA	False	NA	NA	False	NA	NA	NA	11685140	11661584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
28324	chr14	-	2759	15	NNC	ENSMUSG00000022031.7	novel	2771	15	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	170.919198596821	2	48	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3452	False	NA	NA	False	NA	NA	NA	65830516	65767897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819586_65819628_65820342_65820410_65823706_65823846_65827954_65828055_65830430
28325	chr8	-	2852	7	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	25	0	intron_retention	FALSE	canonical	3	68	junction_3	21.9222109590555	2	59	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	27713831	27687486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
28326	chr10	-	2380	15	Antisense	novelGene_ENSMUSG00000006345.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	496	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAGCCAGAGTCCAGCC	NA	False	NA	NA	False	NA	NA	NA	75422027	75399941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_75400213_75400651_75400738_75409442_75409576_75410055_75410230_75411782_75411913_75412047_75412135_75414560_75414755_75415058_75415215_75416332_75416486_75417128_75417265_75420650_75420842_75420991_75421118_75421218_75421331_75421421_75421544_75421718
28328	chr4	-	2917	16	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-182	-218	intron_retention	FALSE	canonical	0	0	junction_11	133.194828061086	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCATGAGGAGCAGCGC	NA	False	NA	NA	False	NA	NA	NA	115980361	115954389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967800_115967883_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
28329	chr6	-	3915	13	NNC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	297	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	16.9377946878833	54	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	97289044	97263827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97288854
28330	chr13	-	3829	14	FSM	ENSMUSG00000021156.18	ENSMUST00000062658.15	3796	14	-26	-7	21	2	multi-exon	FALSE	canonical	3	34	junction_13	37.5302639220559	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCAGTAAGCTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	9815222	9734866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9815090
28331	chr18	+	3428	16	ISM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	-38	17789	-30	3238	5prime_fragment	FALSE	canonical	3	169	junction_7	105.765442791532	37	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGCGTGTGTGTGTAT	5617	False	NA	NA	False	NA	NA	NA	31937112	32022661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122
28332	chr14	-	3765	21	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	19842	101995	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	98	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGACTCGGAGCGGCGA	NA	False	NA	NA	False	NA	NA	NA	21082303	20979514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20979756_21017604_21017677_21032641_21032791_21033433_21033541_21035690_21035816_21037023_21037184_21045076_21045169_21045910_21046059_21051196_21051345_21053160_21053339_21057182_21057372_21058927_21059126_21060102_21060233_21064976_21065127_21069345_21069449_21070540_21070849_21072069_21072186_21074165_21074357_21079241_21079451_21079852_21079951_21081650
28333	chr19	-	1796	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1031.99464024771	5	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGAGATTGTGACTTTCA	NA	False	NA	NA	False	NA	NA	NA	8691236	8684936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686450_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
28334	chr13	+	2484	23	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	13	35	combination_of_known_junctions	FALSE	canonical	3	14	junction_13	263.722215645162	5	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGCTGCCCTG	1348	False	NA	NA	False	NA	NA	NA	59733246	59782601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59766044_59766093_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
28336	chr17	-	3110	3	NNC	ENSMUSG00000008668.16	novel	632	4	NA	NA	-1	1	intron_retention	FALSE	non_canonical	0	0	junction_1	10025	2	96	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACCTCCGTCTCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	34174635	34170976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34171087_34171194_34174151_34174591
28337	chr17	-	2039	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	-2	256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.8895179622	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATTTTTTATGAGG	4815	False	NA	NA	False	NA	NA	NA	25179621	25161187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25161282_25162128_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
28338	chr1	-	1713	16	NIC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	352.694138816561	79	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	78465464	78401721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
28339	chr6	+	2580	14	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	-6	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	585.290379557333	2	111	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAACTGAATAAAGCAACA	NA	False	NA	NA	False	NA	NA	NA	71808387	71852209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829749_71829852_71830156_71830253_71833895_71834014_71837986_71838091_71839328_71839465_71840124_71840255_71845549_71845788_71848410_71848543_71849777_71849908_71851300
28340	chr9	-	2735	4	FSM	ENSMUSG00000032199.14	ENSMUST00000163972.2	2138	4	-596	-1	351	1	multi-exon	FALSE	canonical	3	31	junction_3	1098.58130736368	1154	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCCGAGCTCATGGCGA	2851	False	NA	NA	False	NA	NA	NA	71392836	71385751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392016
28342	chr10	+	1904	4	ISM	ENSMUSG00000015757.11	ENSMUST00000138151.8	1548	9	2	7949	2	-5977	5prime_fragment	FALSE	canonical	3	271	junction_3	17.5562587763516	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATACTCTAGGTCAGTAA	1141	False	NA	NA	False	NA	NA	NA	7668673	7675181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521
28343	chrUn_JH584304v1	+	3899	24	Intergenic	novelGene_4592	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	15.9958643048203	1	92	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCTCCTACTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	14081	52729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_14202_19242_19346_20219_20377_24798_24959_26983_27055_28052_28146_29421_29520_31432_31500_38114_38246_39081_39164_39432_39612_40110_40187_41049_41127_41974_42078_44213_44311_47516_47678_47923_47999_48581_48657_48768_48946_49051_50277_51408_51545_51650_51730_52288_52401_52484
28344	chr17	+	3441	8	Antisense	novelGene_ENSMUSG00000055240.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCCAGGGGCAGAAACTT	NA	False	NA	NA	False	NA	NA	NA	33550415	33613579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_33550542_33551936_33554628_33555428_33555483_33555694_33555822_33557073_33557225_33605394_33605442_33605658_33605785_33613460
28345	chr4	+	2191	8	NNC	ENSMUSG00000028884.15	novel	1813	9	NA	NA	2	-269	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	514.033549290237	38	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGAAATGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	132495647	132505794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503655_132504344
28346	chr11	-	2763	3	FSM	ENSMUSG00000044066.15	ENSMUST00000162811.2	2788	3	13	12	2	-12	multi-exon	FALSE	canonical	3	111	junction_1	11	131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTAACTGGAGTCTTGT	3057	False	NA	NA	False	NA	NA	NA	20199416	20188398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20190699_20191885_20192239_20199306
28347	chr4	-	2022	12	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	-15	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	117.638190234519	11	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGACTGGTTTGGCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	149251179	149234458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235221_149235309_149235371_149238358_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
28348	chr18	+	3372	19	FSM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	-63	-100	-17	100	multi-exon	FALSE	canonical	3	177	junction_1	21.3625378803961	163	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAATTATAGCTTTTGAAA	3228	False	NA	NA	False	NA	NA	NA	11790422	11876035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
28351	chr2	+	2598	14	NNC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	14	1067	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	151.544162329318	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGGTGTAATACTGTG	NA	False	NA	NA	False	NA	NA	NA	69553211	69580959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69553302_69561834_69561925_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574064_69579314_69579442_69579615
28352	chr11	+	1654	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-270	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	3901.83149302991	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATCATGCCTCCATC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655549_75655677
28353	chr13	-	3630	2	FSM	ENSMUSG00000042364.12	ENSMUST00000109241.5	4447	2	807	10	807	-4	multi-exon	FALSE	canonical	3	496	junction_1	0	300	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGCCATCGCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	113754293	113728724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_113731399_113753337
28354	chr6	+	5186	3	FSM	ENSMUSG00000038065.14	ENSMUST00000190641.7	5303	3	107	10	-23	-10	multi-exon	TRUE	canonical	3	54	junction_2	0.5	100	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCTGGTGCTATTTGTC	NA	False	NA	NA	False	NA	NA	NA	54658715	54680826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_54658917_54665990_54666114_54675964
28355	chr4	-	2095	9	NNC	ENSMUSG00000028896.14	novel	2285	10	NA	NA	-76	-37	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	147.341387176177	1	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTGTAACACTTTAATAA	8104	False	NA	NA	False	NA	NA	NA	132067319	132059270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062163_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235
28356	chrX	+	1873	7	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1044.15251387057	1	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCAGTTTTGGGTGTAC	NA	False	NA	NA	False	NA	NA	NA	139357373	139376882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369672_139372745_139372920_139374527_139374658_139375923
28357	chr16	+	3026	15	Antisense	novelGene_ENSMUSG00000022822.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGACACAGGTCAGATAGA	9566	False	NA	NA	False	NA	NA	NA	20150666	20194148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_20151454_20152333_20152501_20153855_20153970_20157625_20157705_20163384_20163543_20176117_20176309_20180931_20181022_20182724_20182914_20184356_20184483_20184561_20184717_20186791_20186921_20187172_20187321_20187775_20187960_20190868_20190970_20193740
28358	chr8	+	2317	13	NIC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	-4	-394	intron_retention	FALSE	canonical	3	384	junction_4	52.9171259822585	351	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCCAGCATTCCAGTTC	2389	False	NA	NA	False	NA	NA	NA	70495694	70524603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70524302_70524455
28359	chr9	-	709	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	-35	-59	-35	59	mono-exon	FALSE	NA	NA	NA	NA	NA	24	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTGACTGTAACAT	NA	False	NA	NA	False	NA	NA	NA	22097552	22096843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22096800_22097600
28360	chr12	+	2723	5	ISM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	9969	9	9969	-9	3prime_fragment	FALSE	canonical	3	611	junction_4	16.9908063375462	3	97	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAATAGTTGCTTTTCT	3485	False	NA	NA	False	NA	NA	NA	102734194	102743957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
28362	chr7	+	3239	5	FSM	ENSMUSG00000055102.16	ENSMUST00000032661.14	2362	5	-41	-836	15	836	multi-exon	FALSE	canonical	3	39	junction_1	20.1416856295594	252	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGATAAGTCTCTCTGT	2851	False	NA	NA	False	NA	NA	NA	43256607	43268545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43256699_43259209_43259403_43261406_43261534_43261970_43262064_43265810
28363	chr1	-	2358	16	NNC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	45	-2	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_5	46.2106288879758	189	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGGTTCTGGAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	36722219	36601778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
28364	chr14	-	2047	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	164	480	0	-480	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTCCTACCTAATGTCA	4859	False	NA	NA	False	NA	NA	NA	54754818	54745123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
28365	chrX	-	1740	11	Antisense	novelGene_ENSMUSG00000062070.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGGCGCCCGCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	105247305	105230750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_105230920_105235610_105235662_105237959_105238118_105238237_105238381_105240446_105240550_105241444_105241567_105243251_105243366_105243760_105243920_105246053_105246226_105246448_105246535_105246842
28367	chr4	+	372	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	9	93	-5	-86	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCAGGATGAAGAGGAGG	NA	False	NA	NA	False	NA	NA	NA	152410318	152416844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
28369	chr8	+	1944	12	NNC	ENSMUSG00000003808.19	novel	1826	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	13	junction_8	190.808718202677	1290	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	NA	False	NA	NA	NA	85583617	85595886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594278_85594347_85594548_85594637_85594716_85594852_85594968_85595494
28370	chr5	-	2301	4	NIC	ENSMUSG00000047215.15	novel	680	7	NA	NA	-1	-6	intron_retention	FALSE	canonical	3	5084	junction_3	3219.39414590178	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTGATTTGTGTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	65548743	65545713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65547827_65548081_65548198_65548288_65548336_65548718
28371	chr15	-	2804	7	FSM	ENSMUSG00000053411.17	ENSMUST00000109616.9	2899	7	90	5	-22	1	multi-exon	FALSE	canonical	3	156	junction_1	127.989582909444	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAGACTTCTGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	79816763	79800012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
28372	chr2	+	4391	8	NNC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	11	0	intron_retention	FALSE	canonical	3	30	junction_1	23.5554058096468	138	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCATTCCTAGTATTAA	NA	False	NA	NA	False	NA	NA	NA	173918125	173941564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_173918932_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
28373	chr2	-	3334	5	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	472	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	NA	NA	NA	106804796	106792871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
28374	chr8	-	2281	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	28	28	28	-18	multi-exon	FALSE	canonical	3	3119	junction_12	186.058007680998	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAATAAAACTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	26337694	26306931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
28375	chr16	+	2225	11	NIC	ENSMUSG00000022721.20	novel	2367	12	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	82.2727780009889	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	288	False	NA	NA	False	NA	NA	NA	18066765	18071366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18070265_18070342_18070582_18070700_18070787_18070885_18070963
28376	chr3	+	2159	18	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-15	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	393.540173949383	3	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAACCTCCTGTGTCGGT	NA	False	NA	NA	False	NA	NA	NA	151916094	151938398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931813_151938031
28377	chr12	+	3366	16	ISM	ENSMUSG00000021012.17	ENSMUST00000110105.10	3514	17	490	-21	472	21	3prime_fragment	FALSE	canonical	3	883	junction_11	215.365013149511	306	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCCTTCTACTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	98713737	98754033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98745366_98745527_98746306_98746540_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
28379	chr6	-	2302	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	78	1105	-1	82	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	6	83	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGAAAAAAACGGTTCACTG	43	False	NA	NA	False	NA	NA	NA	30509704	30482331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
28381	chr15	-	2572	4	NIC	ENSMUSG00000062683.12	novel	731	5	NA	NA	80	-4	intron_retention	FALSE	canonical	3	3206	junction_3	741.096634874442	133	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTTTCTTGAGTCTCC	3981	False	NA	NA	False	NA	NA	NA	102579482	102571302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102573683_102574197_102574291_102576145_102576215_102579452
28382	chr3	-	1629	8	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	-36	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	270.514702154306	12	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCTTAAGTAATTATAAAC	NA	False	NA	NA	False	NA	NA	NA	131065709	131027086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036199_131038852_131038936_131042064_131042223_131043451_131043581_131065524
28383	chr5	+	3274	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	14	11	-1	-6	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	191	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTCAGAAAGTCTCTGGT	7160	False	NA	NA	False	NA	NA	NA	31609792	31639087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
28384	chr2	-	1648	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	14	200	0	-194	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	428	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACCCATTCAGGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	172212441	172198309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
28385	chr11	+	1641	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	11	-271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5071.22113104921	55	72	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATATATCATGCCTCCAT	3046	False	NA	NA	False	NA	NA	NA	75623749	75656400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642836_75642907_75646399_75646507_75647642_75647850_75650117_75650249_75655442
28388	chr10	-	2311	12	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_9	166.573191417988	27	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417393	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116363731_116363855_116384937_116385081_116417357
28389	chr2	+	1879	3	NIC	ENSMUSG00000038900.18	novel	1417	4	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	2580	junction_2	1971.5	14	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGGGCTTGGCTGCTTT	5796	False	NA	NA	False	NA	NA	NA	32851725	32854053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32852685_32852996_32853866_32854002
28390	chr12	+	2247	9	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-48	intron_retention	FALSE	non_canonical	0	0	junction_2	2104.05316814357	3	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACCAACTGGCTACACC	NA	False	NA	NA	False	NA	NA	NA	24758281	24763292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758944_24759085_24759323_24759441_24760355_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
28391	chrX	+	3728	6	NNC	ENSMUSG00000094004.8	novel	3677	5	NA	NA	28	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	97.6258162577912	1	149	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATCCTCAGGAATGATTAA	NA	False	NA	NA	False	NA	NA	NA	134274060	134284112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134274160_134274357_134274485_134278675_134278976_134280276_134280862_134281439_134282610_134282665
28392	chr11	+	3222	19	ISM	ENSMUSG00000010342.17	ENSMUST00000060835.12	4763	31	104534	4010	-27125	-3144	internal_fragment	FALSE	canonical	1	19	junction_2	25.6016492524299	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGAGGGTTTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	87400424	87442639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_87400546_87402250_87402442_87402958_87403110_87404767_87405688_87407493_87407601_87410480_87410564_87411463_87411746_87413320_87413422_87418669_87418737_87423172_87423255_87424364_87424428_87426358_87426487_87427520_87427727_87429391_87429489_87429821_87429897_87433315_87433394_87434109_87434204_87440257_87440351_87442356
28395	chr10	+	1112	7	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	-586	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4087.83470257245	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	127921028	127926142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924373_127924873_127925028_127925887
28396	chr11	+	3882	20	Antisense	novelGene_ENSMUSG00000057897.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	117	10	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCCGCTCGCGGGCACG	NA	False	NA	NA	False	NA	NA	NA	5919644	6015594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_5921827_5922216_5922453_5922631_5922726_5922811_5922889_5926764_5926893_5929672_5929719_5932497_5932575_5932722_5932762_5938100_5938143_5938953_5939039_5939331_5939455_5939573_5939671_5940163_5940246_5940318_5940423_5942819_5942893_5947882_5947948_5951336_5951393_5965449_5965510_5978866_5978961_6015472
28397	chr11	+	2161	12	FSM	ENSMUSG00000018932.10	ENSMUST00000019076.10	2198	12	14	23	-7	-6	multi-exon	FALSE	canonical	3	361	junction_6	27.3405217988137	1273	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATCGTGTGAGACT	NA	False	NA	NA	False	NA	NA	NA	60822872	60843614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
28398	chr15	-	3088	17	NNC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	66.3612273846709	1	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTCATTGTACAGTG	NA	False	NA	NA	False	NA	NA	NA	79212453	79170432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190603_79191506_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212290
28399	chr14	-	1831	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_10	218.114789100808	2627	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	30741056	30734390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
28400	chr10	-	2004	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	45	1703	45	-179	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCAGATTAACACCTGCA	NA	False	NA	NA	False	NA	NA	NA	115087327	115035479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
28401	chr7	+	1903	10	NNC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_3	242.01882387763	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTGAGTTTTCAGACT	NA	False	NA	NA	False	NA	NA	NA	63835130	63861176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63847024_63847105_63848910_63849019_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
28403	chr4	-	3111	14	NIC	ENSMUSG00000028345.16	novel	3203	16	NA	NA	0	-18	intron_retention	FALSE	canonical	3	43	junction_11	203.60426868033	6	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTCAACTTTTAAAGAAGT	8	True	NA	NA	False	NA	NA	NA	48473422	48430875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468994_48469883_48470073_48473265
28404	chr1	+	3245	3	NIC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	15395	-7	intron_retention	FALSE	canonical	3	59	junction_2	10	5	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATAATTTTTAGTAGTAT	NA	False	NA	NA	False	NA	NA	NA	183185719	183191013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_183187850_183189427_183189583_183190053
28405	chr11	-	3089	7	NIC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	8	-15	intron_retention	FALSE	canonical	3	42	junction_5	71.8410668690888	198	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTAACCTGACTCTG	NA	False	NA	NA	False	NA	NA	NA	61385084	61379652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384349_61384781_61384905
28406	chr8	+	2779	23	NNC	ENSMUSG00000031930.12	novel	2758	23	NA	NA	16610	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	195.476087607785	1	66	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCTGTTGCAAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	108179657	108283844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108179696_108184074_108184223_108184511_108184634_108209985_108210102_108212177_108212275_108232938_108233071_108244542_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
28409	chr8	+	2872	6	NIC	ENSMUSG00000091490.4	novel	1395	7	NA	NA	2	-1	intron_retention	FALSE	canonical	3	6	junction_3	200.64456135166	1	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGTGGCTCTCTGCATG	NA	False	NA	NA	False	NA	NA	NA	43633579	43646917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_43633650_43636158_43636403_43636739_43638496_43643105_43643129_43643305_43643407_43646239
28411	chr10	+	3513	18	ISM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	40	45291	39	14403	5prime_fragment	FALSE	canonical	3	154	junction_10	22.1944848038728	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTTTACTGACTTATTTG	NA	False	NA	NA	False	NA	NA	NA	84458195	84517751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229
28412	chr9	+	1625	9	NNC	ENSMUSG00000032602.7	novel	1783	9	NA	NA	76	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	297.62129880101	23	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCATCGTGTGATATT	5153	False	NA	NA	False	NA	NA	NA	108539372	108561836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108539532_108546964_108547008_108549645_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
28413	chr9	-	2535	11	NIC	ENSMUSG00000032480.18	novel	3806	19	NA	NA	-577	0	intron_retention	FALSE	canonical	3	468	junction_9	54.1464680288567	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109917099	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915775_109915999_109916105_109916187_109916264_109916497
28415	chr10	-	2346	9	NIC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	-1464	-9	intron_retention	FALSE	canonical	3	867	junction_8	70.1440482150838	3	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGACGCTCTGCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	80887346	80879919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056
28416	chr10	+	2139	10	NIC	ENSMUSG00000019794.14	novel	1774	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	353	junction_4	21.9870893654761	1338	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGTTTCAATTTAGCAC	NA	False	NA	NA	False	NA	NA	NA	7601771	7638913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7637134_7638553
28417	chr7	-	952	8	NIC	ENSMUSG00000053565.11	novel	774	8	NA	NA	-8	-4	combination_of_known_junctions	FALSE	canonical	3	86	junction_6	1203.94528318274	15745	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCCTATTGTCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	28681297	28670801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679743_28679968_28681098
28418	chr4	+	4320	21	FSM	ENSMUSG00000028830.15	ENSMUST00000047431.11	4384	21	60	4	4	-4	multi-exon	FALSE	canonical	2	36	junction_1	9.66643677887566	74	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCCTGGCTATGAGGT	NA	False	NA	NA	False	NA	NA	NA	126647622	126748125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_126647789_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
28419	chr3	-	4536	15	NNC	ENSMUSG00000098912.8	novel	6054	2	NA	NA	11571	7730	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	194	62	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACCGGCTGACGTGCGCG	NA	False	NA	NA	False	NA	NA	NA	88728104	88682519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88682581_88684289_88684820_88691612_88691806_88695642_88695745_88696662_88696715_88706913_88707031_88715218_88715410_88715859_88715950_88717975_88718142_88719318_88719466_88720990_88721142_88722938_88723054_88723314_88725067_88726974_88727092_88727352
28420	chr3	+	1609	5	NNC	ENSMUSG00000027500.11	novel	2073	5	NA	NA	-18425	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	781.592285018218	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATATTTACTCTTCGT	NA	False	NA	NA	False	NA	NA	NA	8606900	8626576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_8606997_8610632_8610806_8619851_8620044_8625325_8625907_8626009
28422	chr7	+	1940	6	FSM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	33	9	1	-2	multi-exon	FALSE	canonical	3	217	junction_1	215.342889364845	23	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTAGGGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	43896178	43901734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
28423	chr10	-	3060	22	NNC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	50	-687	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	78.7126292569061	1	80	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGAGTTTCCGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78020933	78007429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78007969_78009214_78009290_78009406_78009445_78009505_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012227_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014405_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
28424	chr5	+	1578	10	NNC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	-26	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	435.871484060708	107	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCAAATAAAGGCAGTACT	5381	False	NA	NA	False	NA	NA	NA	100666282	100695635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685307_100689409_100689519_100691704_100691790_100695169
28425	chr19	+	1145	9	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	116	837	116	-837	5prime_fragment	FALSE	canonical	3	5201	junction_1	1311.37015655382	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAACCAACAACAGCAGCT	959	False	NA	NA	False	NA	NA	NA	8944520	8955006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948
28426	chr2	-	1906	17	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-11	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	146.284397664276	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGAATCCATCCACCCCC	NA	False	NA	NA	False	NA	NA	NA	164699564	164681460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688843_164690088_164690267_164693432_164693518_164694382_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
28427	chr9	+	3597	15	Antisense	novelGene_ENSMUSG00000032127.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	117	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCCGGAAGCGAAATCAC	4382	False	NA	NA	False	NA	NA	NA	44259427	44272944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44259882_44260199_44260425_44263896_44264069_44264209_44264407_44264509_44264649_44265128_44265295_44265398_44265591_44265707_44266448_44266995_44267139_44267462_44267725_44269363_44269614_44270434_44270597_44270903_44271050_44271138_44271285_44272741
28429	chr11	-	3007	11	NNC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	69	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	50.3230563459733	2	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1146	False	NA	NA	False	NA	NA	NA	61158198	61135678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61137148_61138754_61138868_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155888_61156122_61158064
28431	chr17	-	3030	8	NNC	ENSMUSG00000023980.8	novel	2793	8	NA	NA	0	-2	intron_retention	FALSE	canonical	3	5	junction_1	69.953920693612	361	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGACATAGGGCCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	47813212	47799208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47801447_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
28432	chr11	+	2129	12	NNC	ENSMUSG00000018932.10	novel	694	7	NA	NA	-869	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	121.20012819457	17	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGCAAGCCTGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	60821989	60843636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60822161_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
28433	chr16	+	1297	8	ISM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	19	12836	-4	-1009	5prime_fragment	FALSE	canonical	3	827	junction_1	65.8975704857043	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAAGGTGTGTAAGGCTT	4385	False	NA	NA	False	NA	NA	NA	93680807	93690167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619
28434	chr2	-	3388	3	Antisense	novelGene_ENSMUSG00000027313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTCCCTATGATTGGGG	NA	False	NA	NA	False	NA	NA	NA	119186733	119181708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119181996_119182836_119182872_119183667
28435	chr13	-	2986	8	FSM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	-19	-1	-19	1	multi-exon	FALSE	canonical	3	32	junction_7	48.3110668861025	106	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120252361	120226721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
28436	chr10	-	2609	14	FSM	ENSMUSG00000020166.16	ENSMUST00000105265.8	2268	14	3	-344	-2	0	multi-exon	FALSE	canonical	3	10	junction_12	150.969411847597	2	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417403	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116384937_116385081_116417357
28437	chr14	-	1610	8	NNC	ENSMUSG00000060373.16	novel	1301	8	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1358.28724682887	4	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGAATTTGAAGGAAAGA	8768	False	NA	NA	False	NA	NA	NA	52341442	52311913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321800_52341345
28439	chr1	-	2603	7	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-85	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	163.318111535603	1	74	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACTCTGGTTTTAAAGC	NA	False	NA	NA	False	NA	NA	NA	13197472	13183666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194739_13195389_13196081_13197333
28440	chr19	-	3878	13	NNC	ENSMUSG00000025195.10	novel	3901	14	NA	NA	16	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	21.3574082905415	6	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	43868191	43835259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857454_43858600_43858749_43862596_43862697_43863265_43863460_43868051
28441	chr15	-	1500	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	11	-5	11	5	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	11	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	2674	False	NA	NA	False	NA	NA	NA	43146104	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
28443	chr2	+	2683	25	NNC	ENSMUSG00000051329.14	novel	5684	37	NA	NA	2573	7722	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	119.574934374038	4	41	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGGAGAAGCGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	90510131	90555977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90510216_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945
28444	chrX	+	1645	10	NIC	ENSMUSG00000031353.14	novel	1862	12	NA	NA	-16	39	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	962.717565598089	38	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543381	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_161543704_161552786_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
28445	chr7	-	3259	19	NNC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	7710	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	171.03183589288	3	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTTTCGGCCTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	27025328	27004569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27004877_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024707_27025102
28446	chr15	-	2783	9	NNC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	54	-290	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.696493454047	1	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAATATCCATCACTC	-14	True	NA	NA	False	NA	NA	NA	12824643	12809147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_12810055_12810114_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
28447	chr6	-	2393	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	873	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	325.048896512458	3	81	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3953	False	NA	NA	False	NA	NA	NA	71884829	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71857784_71857828_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866664_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884760
28448	chr9	+	2085	2	Genic_Genomic	ENSMUSG00000096647.3	novel	871	1	NA	NA	-19	1300	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAATTATTTTC	NA	False	NA	NA	False	NA	NA	NA	90000970	90003160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_90002013_90002117
28449	chr16	-	2971	21	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	94	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	705.70271892632	2	125	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTATCTAGCATTTATT	1664	False	NA	NA	False	NA	NA	NA	91439877	91418285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418844_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426942_91427147_91427549_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438224_91438481_91438578_91439844
28450	chr2	-	2528	7	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	0	-11	intron_retention	FALSE	canonical	3	258	junction_2	25.5891687156022	1082	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAAGAAGTCTAAAGTTG	6146	False	NA	NA	False	NA	NA	NA	181007127	180999688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181006192_181006397_181006505_181007011
28452	chr19	-	1040	3	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	-261	intron_retention	FALSE	non_canonical	0	0	junction_1	0	11	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGGGACAAATCAAAAATA	NA	False	NA	NA	False	NA	NA	NA	5544059	5542523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5542830_5543176_5543253_5543401
28453	chr5	+	2833	15	NNC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_2	68.543744411574	1	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGAGGCTGTAGCTTAGT	NA	False	NA	NA	False	NA	NA	NA	24599404	24614944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24599582_24604910_24605221_24605519_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611524_24611665_24611800_24612305_24612454_24613565_24613817_24614351
28454	chr7	+	4192	13	NIC	ENSMUSG00000030987.6	novel	2183	13	NA	NA	-18	-4	combination_of_known_junctions	FALSE	canonical	3	47	junction_11	7.93856620135735	100	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGCTGGCTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	101916994	102086521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101917761_102003707_102003839_102035293_102035409_102057573_102057686_102060455_102060572_102064544_102064723_102070559_102070738_102075179_102075348_102075906_102076008_102076288_102076525_102077980_102078074_102080091_102080159_102084590
28455	chr2	-	2840	9	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	-14	-12	intron_retention	FALSE	canonical	3	250	junction_6	28.6244541432671	2	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTCCTTGTCTA	9049	False	NA	NA	False	NA	NA	NA	25246323	25242313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25243529_25243619_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
28456	chr2	-	1250	11	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	1798.48327487358	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9578	False	NA	NA	False	NA	NA	NA	10085247	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061065_10061224_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
28457	chr13	+	2686	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	-4	175	0	96	multi-exon	FALSE	canonical	0	0	junction_10	57.0470300398157	380	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTTTGCCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	84370414	84444085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
28460	chr9	-	4367	20	ISM	ENSMUSG00000043067.16	ENSMUST00000170356.2	4715	22	18085	-25	2859	0	3prime_fragment	TRUE	canonical	3	255	junction_7	22.5559323261641	162	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCATGTGTTTTCTGCC	NA	False	NA	NA	False	NA	NA	NA	24396351	24323073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872_24373931_24385069_24385164_24386628_24386750_24393224_24393363_24396309
28461	chr8	+	2825	18	FSM	ENSMUSG00000001472.18	ENSMUST00000108840.4	2582	18	-234	-9	-164	5	multi-exon	TRUE	canonical	3	124	junction_17	99.4416940675849	475	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGATATGGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	124100327	124130554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
28462	chr13	-	3912	7	FSM	ENSMUSG00000100235.9	ENSMUST00000186303.7	3886	7	-26	0	19	0	multi-exon	FALSE	canonical	1	2	junction_1	5.63964143856288	1	110	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	False	NA	NA	False	NA	NA	NA	67256639	67217462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67245856_67247112_67250106_67250200_67250761_67250846_67256512
28463	chr15	+	2190	13	NIC	ENSMUSG00000022471.15	novel	3296	13	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	189.859359497732	1379	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGCACTTTTCAGTAT	NA	False	NA	NA	False	NA	NA	NA	81900676	81924286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81900860_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
28464	chr7	-	3747	4	FSM	ENSMUSG00000050855.17	ENSMUST00000145098.2	3712	4	-37	2	-9	-2	multi-exon	FALSE	canonical	3	25	junction_3	12.2836838484589	77	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAAATTGGTGTGTGTGT	3414	False	NA	NA	False	NA	NA	NA	29553103	29542676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29545674_29545893_29546386_29550366_29550443_29552921
28465	chrX	+	3815	4	FSM	ENSMUSG00000033361.14	ENSMUST00000048790.7	5931	4	0	2116	0	496	multi-exon	FALSE	canonical	3	9	junction_1	0.471404520791032	15	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAGAGAGAGACAGACAC	NA	False	NA	NA	False	NA	NA	NA	71006587	71014212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_71006654_71009420_71009459_71010107_71010269_71010662
28466	chr17	-	2192	12	NNC	ENSMUSG00000079553.12	novel	2260	12	NA	NA	2	2	intron_retention	FALSE	canonical	0	0	junction_6	183.72576581632	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	9725	False	NA	NA	False	NA	NA	NA	34109603	34094639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103788_34103913_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
28467	chrX	-	1104	1	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACGATGTGGGTCATGCC	2470	False	NA	NA	False	NA	NA	NA	13070087	13068983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13069000_13070100
28468	chr6	-	3146	5	Genic_Genomic	ENSMUSG00000108368.2	novel	2499	1	NA	NA	-1504	1495	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	111	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTCCCGCATTCGTCCA	NA	False	NA	NA	False	NA	NA	NA	72583989	72578491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_72580834_72581847_72581969_72582956_72583094_72583365_72583476_72583553
28469	chr8	+	3131	16	NNC	ENSMUSG00000031657.17	novel	3251	15	NA	NA	46	0	intron_retention	FALSE	non_canonical	0	0	junction_15	71.3409341744898	7	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	NA	NA	NA	88864529	88898655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486_88898497_88898569
28470	chr2	-	3153	21	FSM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	43	0	-7	0	multi-exon	FALSE	canonical	3	76	junction_7	21.856063231973	282	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	130539396	130526032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538567_130538676_130539278
28471	chr8	+	1989	12	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	188	-2095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	955.903553349283	18	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111760735	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772228_111781809
28472	chr1	+	2635	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113230.8	1569	6	397	-1463	50	-1	multi-exon	FALSE	canonical	3	1076	junction_1	501.781067797501	142	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCATGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	87142057	87155785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
28473	chr12	+	1392	9	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-19	-1689	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	1484.77762960485	6	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908839	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913370_78913446_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
28476	chr1	+	2354	19	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	253.104843352305	12	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3060	False	NA	NA	False	NA	NA	NA	171910391	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939498_171949356
28477	chrX	+	2617	20	NNC	ENSMUSG00000000037.18	novel	1257	12	NA	NA	14632	-7833	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	115.129169899608	2	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATGTTATCCCAAAAGC	4663	False	NA	NA	False	NA	NA	NA	159921895	160015027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159922056_159927758_159927837_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160011672_160011757_160013008_160013171_160014395
28478	chr4	+	3762	9	NNC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	35	junction_4	64.9652551368807	2	118	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGAGTTGTTGAGGTC	8268	False	NA	NA	False	NA	NA	NA	156194451	156211714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156204630_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
28479	chr18	+	6713	4	FSM	ENSMUSG00000033960.7	ENSMUST00000037029.7	6782	4	60	9	60	-9	multi-exon	TRUE	canonical	3	21	junction_2	13.6950923894494	55	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATCACCTCTTTGGTA	-6	True	NA	NA	False	NA	NA	NA	4634937	4682860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_4635032_4649074_4649406_4672514_4676168_4680225
28480	chr16	-	3275	16	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	294.781154229521	1	141	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTATCATTGTACCCAAAT	8116	False	NA	NA	False	NA	NA	NA	4867721	4831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844377_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
28481	chr13	-	2794	2	FSM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	-49	-4	-49	4	multi-exon	FALSE	canonical	3	40	junction_1	0	298	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACAAGTTCTTT	9777	False	NA	NA	False	NA	NA	NA	95661784	95648235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_95650790_95661544
28482	chr8	-	752	1	Intergenic	novelGene_1719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCAGGCAGATTTCTGAG	NA	False	NA	NA	False	NA	NA	NA	106453036	106452284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_106452300_106453000
28485	chrX	+	3801	17	FSM	ENSMUSG00000035967.16	ENSMUST00000039374.9	3766	17	-33	-2	-13	1	multi-exon	FALSE	canonical	3	20	junction_10	18.8414436814168	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTAGGTGTATGTCTC	NA	False	NA	NA	False	NA	NA	NA	55500203	55553201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
28487	chr5	+	2456	14	NNC	ENSMUSG00000029146.15	novel	2019	16	NA	NA	-1	1	intron_retention	FALSE	canonical	2	4	junction_1	106.931432988372	24	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTACCTTTGGTTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	31350636	31356239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31350818_31351212_31351288_31352139_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
28489	chr10	-	1525	9	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	726.072611726954	8	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725649	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706022_93715965_93716001_93722855_93722964_93725399
28490	chr10	-	1967	13	NIC	ENSMUSG00000020166.16	novel	2120	16	NA	NA	-1	-6	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	176.289278523177	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTACGAATGTGTATAT	NA	False	NA	NA	False	NA	NA	NA	116417402	116321419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385011_116417357
28491	chr9	-	4000	4	NIC	ENSMUSG00000032436.18	novel	993	5	NA	NA	0	-10	intron_retention	FALSE	canonical	3	1122	junction_1	141.662352875498	16	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAATTGCAGCAGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	114610917	114585916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_114586360_114587872_114591074_114592286_114592461_114610735
28495	chr1	+	2515	7	FSM	ENSMUSG00000026319.14	ENSMUST00000190459.7	809	7	-111	-1595	-111	-66	multi-exon	FALSE	canonical	3	120	junction_1	14.8735410115487	82	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGTGTATTTTGTTT	3931	False	NA	NA	False	NA	NA	NA	105667825	105682845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_105668243_105669021_105669086_105670935_105671075_105673793_105673911_105678046_105678136_105678697_105678769_105681227
28496	chr12	-	5054	22	FSM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	332	0	332	0	multi-exon	FALSE	canonical	3	74	junction_16	12.716336556552	132	22	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGGGCTGTGTTTGAGTA	8289	False	NA	NA	False	NA	NA	NA	85385804	85346287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85348701_85350240_85350448_85352236_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160_85357323_85358111_85358221_85359719_85359876_85360955_85361003_85361175_85361377_85362353_85362499_85367487_85367681_85368802_85368854_85372081_85372147_85374162_85374274_85376617_85376750_85379274_85379381_85380759_85380831_85381371_85381428_85383081_85383260_85385776
28497	chr6	-	856	2	NNC	ENSMUSG00000029922.16	novel	2992	8	NA	NA	6005	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATTGGTCTTG	2036	False	NA	NA	False	NA	NA	NA	39375659	39374748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39375110_39375164
28498	chr4	+	2088	17	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	13	136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	320.775232834457	485	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	9994	False	NA	NA	False	NA	NA	NA	155954036	155973326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970143_155970585_155970614_155971254_155971445_155971529_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
28499	chr10	+	5880	15	ISM	ENSMUSG00000033444.15	ENSMUST00000040105.8	5928	16	849	12	849	-12	3prime_fragment	FALSE	canonical	3	164	junction_3	13.653884847492	71	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGATTTCCTAGTTTGTT	5458	False	NA	NA	False	NA	NA	NA	75066537	75148221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_75066706_75076898_75077053_75080912_75082547_75084270_75084479_75093701_75093776_75094801_75094978_75097627_75097792_75099112_75099205_75103332_75103424_75109850_75109935_75112604_75112762_75115692_75115796_75143070_75143188_75143867_75143928_75145623
28500	chr1	+	3503	9	NIC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	-6096	-31	intron_retention	FALSE	canonical	3	609	junction_6	25.3226060072813	4	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAAATAAAAACTGTAATT	NA	False	NA	NA	False	NA	NA	NA	131088019	131101184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_131088362_131089021_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
28502	chr1	-	2177	14	NNC	ENSMUSG00000026341.17	novel	2554	13	NA	NA	-14	237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	853.405991883259	33	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACTACTTGTTTCAGGC	NA	False	NA	NA	False	NA	NA	NA	125363478	125320983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125321321_125321369_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
28504	chr9	-	3096	19	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	14087	-5	at_least_one_novel_splicesite	TRUE	canonical	2	15	junction_18	142.806190428466	17	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAATTTGTTTTTCTTGCT	1361	False	NA	NA	False	NA	NA	NA	31028936	31000702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31028786
28505	chr14	+	2384	9	ISM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	238	0	-238	intron_retention	FALSE	canonical	3	499	junction_4	29.3928137475812	2413	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACCTTAGGAACATAACT	NA	False	NA	NA	False	NA	NA	NA	54598297	54606892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609
28506	chr7	-	2760	9	NIC	ENSMUSG00000030934.10	novel	2152	10	NA	NA	17	-49	intron_retention	FALSE	canonical	3	402	junction_5	42.7461621084279	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAGGCCTTTTATTCTA	NA	False	NA	NA	False	NA	NA	NA	132178110	132159255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
28507	chr19	-	3243	25	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	-67	-154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	336.094788113744	4	103	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGATGTAGAATATTTTT	NA	False	NA	NA	False	NA	NA	NA	37340077	37247982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257989_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273331_37275445_37275574_37281292_37281396_37287191_37287295_37289488_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302545_37302717_37306379_37306588_37307826_37308012_37339912
28508	chr8	+	1887	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	-25	-2	-25	2	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	519	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACCTGCTTCAACCTTA	NA	False	NA	NA	False	NA	NA	NA	106738113	106780453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
28509	chr15	-	1640	6	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	401	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	659.045977151822	135	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056392	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038814_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
28510	chr14	-	2724	9	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	-32	intron_retention	FALSE	canonical	3	19	junction_1	116.070829668785	59	36	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAACTTAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59607998	59584887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
28511	chrX	+	877	1	Intergenic	novelGene_4100	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCCCCAAGACCATATT	NA	False	NA	NA	False	NA	NA	NA	161545541	161546418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_161545500_161546400
28512	chr5	-	4268	8	Antisense	novelGene_ENSMUSG00000079562.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	128	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGAGCGGAGGAGGCGGG	4994	False	NA	NA	False	NA	NA	NA	33530632	33492912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33492986_33515778_33515965_33517693_33520160_33523063_33523141_33525979_33526089_33527772_33527914_33528959_33529152_33529608
28513	chr17	+	1539	6	NNC	ENSMUSG00000046711.17	novel	1631	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2265.42578779354	4	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTCTGGTGTAAGGAG	NA	False	NA	NA	False	NA	NA	NA	27775624	27782642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411_27781478_27781541
28514	chr8	+	3949	13	NIC	ENSMUSG00000039842.16	novel	4662	14	NA	NA	6	-18	combination_of_known_splicesites	FALSE	canonical	2	8	junction_12	46.4396262785231	6	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGATGCCCAGCAAAGA	NA	False	NA	NA	False	NA	NA	NA	18645603	18853187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18851421
28515	chr7	+	4735	2	Antisense	novelGene_ENSMUSG00000057894.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGCCATGGTCGCAACAAC	NA	False	NA	NA	False	NA	NA	NA	12540873	12552758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_12545594_12552743
28516	chr17	+	3823	4	NIC	ENSMUSG00000025737.6	novel	3139	8	NA	NA	32	-15	intron_retention	FALSE	canonical	3	114	junction_3	8.52447456836295	1	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAATCCAGAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	26042654	26047680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26043661_26044627_26046968_26047127_26047313_26047388
28517	chr7	-	2343	13	Antisense	novelGene_ENSMUSG00000030852.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCCTCAGAGGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	130366512	130331013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_130331557_130335233_130335295_130336676_130336880_130341540_130341604_130342569_130342685_130343858_130344032_130352917_130353062_130353561_130353639_130355345_130355391_130360893_130361054_130361261_130361369_130361642_130361764_130365981
28518	chr13	-	1432	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-473	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	208.621667139346	46	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312203_34312469_34312515_34312854_34312966_34313228_34313338_34314159
28519	chr19	-	4813	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	2	17	2	-17	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	1	280	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGGTTGTACTGTCTGG	-2	True	NA	NA	False	NA	NA	NA	44396146	44382910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
28520	chr6	-	1878	7	FSM	ENSMUSG00000030127.16	ENSMUST00000129976.8	795	7	8	-1091	8	0	multi-exon	FALSE	canonical	3	167	junction_6	612.067443633098	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	124942245	124935778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
28521	chr2	-	1960	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102497.10	1962	6	2	0	2	0	multi-exon	FALSE	canonical	3	64	junction_5	44.5394207416307	250	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	NA	NA	NA	120439834	120434718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439595
28522	chr11	-	1434	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	70	5	-1	-4	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	48	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGTTTGAGTGCAGATC	NA	False	NA	NA	False	NA	NA	NA	119190845	119179193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
28523	chr1	+	2298	4	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_2	556.935264540583	42	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	NA	False	NA	NA	NA	180720672	180726668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722335_180722407_180725014
28524	chr4	+	3893	5	NIC	ENSMUSG00000078773.12	novel	2403	4	NA	NA	10	6	combination_of_known_splicesites	FALSE	canonical	3	26	junction_4	90.9202947641504	114	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGAATTTATGTTATG	-15	True	NA	NA	False	NA	NA	NA	11558931	11585750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633_11580108_11583676
28527	chr12	-	3987	19	FSM	ENSMUSG00000052593.17	ENSMUST00000064536.13	4443	19	167	289	58	5	multi-exon	FALSE	canonical	3	115	junction_17	16.3499537508313	1	115	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTAATTGTATTACTT	NA	False	NA	NA	False	NA	NA	NA	21423466	21373806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
28528	chr7	+	1921	11	ISM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	479	1598	-79	15	3prime_fragment	FALSE	canonical	3	550	junction_8	39.7397785600272	862	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGGAGGGCAGGCGAGC	NA	False	NA	NA	False	NA	NA	NA	127503732	127507795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
28530	chr6	-	2042	7	NNC	ENSMUSG00000079477.10	novel	2159	6	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	683.24414052047	15	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGCTGTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	88022214	87976089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87977382_87977458_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
28531	chr9	-	2274	13	NNC	ENSMUSG00000032113.17	novel	3397	13	NA	NA	-16	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	130.406708885019	2	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGGTCCTGTATTCCT	705	False	NA	NA	False	NA	NA	NA	36637897	36620734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625042_36625714_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
28532	chr19	+	4449	6	Antisense	novelGene_ENSMUSG00000025007.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTCCAGCTCTCCGGAGT	NA	False	NA	NA	False	NA	NA	NA	40558873	40576825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40562814_40566021_40566126_40566214_40566364_40573931_40574052_40574572_40574633_40576749
28533	chr4	-	4973	12	NNC	ENSMUSG00000038598.10	novel	4664	28	NA	NA	-6732	2403	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	5.11681719253465	69	13	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATTGTCAAATATTGG	NA	False	NA	NA	False	NA	NA	NA	59117845	59078728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_59082492_59084250_59084346_59085233_59085343_59086879_59086982_59092350_59092502_59093848_59093934_59094129_59094284_59099251_59099431_59109585_59109668_59111092_59111205_59113897_59113978_59117784
28535	chr8	+	2370	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	-7	1197	-7	-1197	multi-exon	FALSE	canonical	3	135	junction_1	1.5	110	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCACAAAACACCATGACCA	NA	False	NA	NA	False	NA	NA	NA	112738022	112745963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_112738775_112741968_112742094_112744470
28536	chr11	-	1486	3	FSM	ENSMUSG00000025574.14	ENSMUST00000154790.2	786	3	-25	-675	5	675	multi-exon	FALSE	canonical	3	149	junction_2	493.5	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGCAACCTGTGGCAAC	NA	False	NA	NA	False	NA	NA	NA	117716688	117711790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_117713017_117715496_117715608_117716539
28538	chr3	+	2845	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	197.787993156021	1	84	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	54600282	54636184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600316_54600523_54600630_54602548_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614560_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622962_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
28539	chrX	-	2256	2	FSM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	224	-1059	224	1059	multi-exon	FALSE	canonical	3	1175	junction_1	0	5976	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTATTCCTCCTGATTTC	NA	False	NA	NA	False	NA	NA	NA	133442390	133436945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_133439017_133442205
28540	chr11	+	1264	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-15	multi-exon	FALSE	non_canonical	0	0	junction_1	0	326	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653939_120654285
28541	chr2	+	2368	12	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	23039	23475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	31	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCGCACAAGCTCCGCC	NA	False	NA	NA	False	NA	NA	NA	5875984	5900181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5876829_5878549_5878629_5879035_5879229_5881173_5881372_5881650_5881809_5882494_5882822_5887393_5887502_5887628_5887760_5891308_5891389_5896100_5896169_5897965_5898035_5900068
28542	chr16	-	3064	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	44.3163344603319	187	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	43710036	43681769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701330_43701577_43709929
28543	chr7	-	2084	6	NIC	ENSMUSG00000053801.19	novel	1898	7	NA	NA	-5	-9	intron_retention	FALSE	canonical	3	447	junction_1	35.7636687156114	55	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACACCAAGCTACAAGTCC	8623	False	NA	NA	False	NA	NA	NA	45480224	45474662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45475518_45476564_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
28544	chr10	+	5544	24	Antisense	novelGene_ENSMUSG00000112816.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	128	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCTTTGCTCCGGTCCGG	NA	False	NA	NA	False	NA	NA	NA	12258026	12424516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_12259948_12277046_12277148_12278626_12278736_12281597_12281839_12282179_12282338_12289678_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312139_12315372_12315538_12317679_12317835_12323746_12323836_12331105_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354234_12356965_12357118_12362132_12362401_12377123_12377250_12401079_12401242_12413787_12413957_12423689
28545	chr3	-	2109	14	NIC	ENSMUSG00000028099.9	novel	2406	15	NA	NA	2	-143	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	77.1762755955021	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGCTCGGCTGCAGAT	NA	False	NA	NA	False	NA	NA	NA	96634789	96618981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96631112_96631369_96633149_96633316_96634428
28547	chr14	+	2789	10	ISM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	25	487	25	-487	intron_retention	FALSE	canonical	3	538	junction_2	119.060623628324	62	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAACTTGCCTCTTGCCT	NA	False	NA	NA	False	NA	NA	NA	62569541	62609954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920
28548	chr17	-	3648	10	FSM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	497	-346	-347	-2	multi-exon	FALSE	canonical	1	126	junction_9	189.388163682976	220	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGCTTCTATTGTCCA	NA	False	NA	NA	False	NA	NA	NA	66192296	66155414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
28550	chrX	+	2796	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	-19	2	-19	-2	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	179	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAAACATTGTTCCAGT	NA	False	NA	NA	False	NA	NA	NA	134643462	134648069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
28552	chr7	-	1308	1	Antisense	novelGene_ENSMUSG00000058454.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCATTGGGGGTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	143402147	143400839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_143400800_143402100
28553	chr19	-	3107	14	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	0	-35	intron_retention	FALSE	non_canonical	0	0	junction_12	765.703613461918	1	154	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTGTCTCTAAATAAAAT	3918	False	NA	NA	False	NA	NA	NA	5345431	5323994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337571_5337650_5345240
28554	chr6	-	2425	10	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	89	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1263.6237133296	1	117	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTGGATTTGAATCTT	8574	False	NA	NA	False	NA	NA	NA	145021821	144944881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946062_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
28556	chr11	-	2094	5	ISM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	3730	-5	3718	-1	3prime_fragment	FALSE	canonical	3	485	junction_1	51.606080068147	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	100328024	100320179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980
28557	chr15	+	1592	10	Antisense	novelGene_ENSMUSG00000022234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATGCGCAGTGCAGACC	NA	False	NA	NA	False	NA	NA	NA	31592430	31601951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_31592612_31592791_31592930_31593012_31593201_31593662_31593783_31594244_31594385_31594477_31594672_31595789_31595990_31597556_31597721_31598144_31598207_31601746
28558	chr4	-	3441	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	30	4	30	-4	multi-exon	FALSE	canonical	3	666	junction_4	59.9637750728526	4	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTCTTTGCTAATGGGA	NA	False	NA	NA	False	NA	NA	NA	132237782	132219346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
28560	chr3	+	2526	6	ISM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	1730	0	87	0	3prime_fragment	FALSE	canonical	3	192	junction_2	18.5752523536021	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	4912	False	NA	NA	False	NA	NA	NA	32566413	32574892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
28561	chr7	-	1820	12	NNC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_11	720.977504491972	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	79765080	79744593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79760662_79760798_79764909
28562	chr17	-	2339	4	NNC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	500.176857610275	46	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAACCCTTACTGTGT	NA	False	NA	NA	False	NA	NA	NA	13135000	13130239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13130637_13132656_13133593_13133872_13134712_13134833
28563	chr12	+	4340	10	FSM	ENSMUSG00000036257.16	ENSMUST00000043082.16	13507	10	45	9122	26	917	multi-exon	FALSE	canonical	3	204	junction_3	27.4419701988589	146	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGTATTCTTTATTAAGC	NA	False	NA	NA	False	NA	NA	NA	44315975	44360193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_44316085_44329360_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354898_44358107
28564	chr10	+	2966	19	NNC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	55.8631761041605	5	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACAGGGTTTATGCTCTG	9111	False	NA	NA	False	NA	NA	NA	41352327	41363022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358043_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
28565	chr6	-	1631	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	-122	9	0	-9	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	3	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGAAATTGTGTAATTA	NA	False	NA	NA	False	NA	NA	NA	51446874	51439748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
28566	chr13	-	3993	11	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-16	-3	intron_retention	FALSE	canonical	0	0	junction_6	45.0964521886146	13	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACTTCTGGTTCACTCTT	NA	False	NA	NA	False	NA	NA	NA	74210396	74185754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199706_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
28567	chr12	+	2652	13	NNC	ENSMUSG00000019969.15	novel	2690	12	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	91.2504185682942	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTCTCTGTCCTGGCTGG	3333	False	NA	NA	False	NA	NA	NA	83734913	83781869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689_83781276_83781325
28568	chr18	-	2888	1	NIC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	21832	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	20	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAAACTCTGGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	34735774	34732886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34732900_34735800
28569	chr11	-	1931	13	NNC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-9	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	89.615691830294	503	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAACCTCTGTATGTGGA	233	False	NA	NA	False	NA	NA	NA	61652897	61620485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643762_61646235_61646289_61647020_61647172_61647407_61647504_61652311_61652401_61652779
28570	chr12	+	2416	12	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-8	-89	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	155.456778293374	1	78	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTACATCTACACCATTCA	NA	False	NA	NA	False	NA	NA	NA	85157658	85180773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157765_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85169530_85169631_85170547_85170646_85175084_85175216_85177233_85177318_85177670_85177839_85179392
28572	chr16	+	1973	9	NIC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	25	38	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	285.814597903956	4	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	38383272	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408645_38411273
28573	chr4	+	2028	11	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	-73	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	50.3861091968808	3	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGGAGCAACGTTACCC	NA	False	NA	NA	False	NA	NA	NA	115696417	115733734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731955_115732012_115732577
28574	chr13	-	2453	4	NNC	ENSMUSG00000114172.2	novel	1732	3	NA	NA	-9962	607	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	33.8755893757667	89	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATAAATTAACACAGACAT	NA	False	NA	NA	False	NA	NA	NA	62801028	62787092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62789246_62790689_62790751_62790936_62791064_62800916
28575	chr3	-	3997	8	Antisense	novelGene_ENSMUSG00000027858.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGCGGCGGGCGCCGGTG	NA	False	NA	NA	False	NA	NA	NA	102679537	102642261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_102642381_102657072_102657175_102664606_102664706_102665470_102665548_102666625_102666725_102668212_102668283_102672498_102672584_102676191
28576	chr11	-	2249	14	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTCTGCGCACGCGCAC	1326	False	NA	NA	False	NA	NA	NA	50277355	50268553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50268630_50269087_50269252_50270291_50270449_50270645_50270790_50272283_50272423_50273361_50273543_50273624_50273697_50273752_50273889_50274005_50274142_50274506_50274566_50274656_50274745_50275468_50275563_50275966_50276016_50276601
28578	chr13	+	2463	10	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-9	-853	intron_retention	FALSE	canonical	3	551	junction_5	41.2905991751986	106	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTGTAGTAGACCTAG	NA	False	NA	NA	False	NA	NA	NA	107083653	107095415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107091248_107093601_107093709_107095162
28580	chr7	+	3906	12	ISM	ENSMUSG00000042308.15	ENSMUST00000047157.13	5927	19	8614	1	7426	-1	3prime_fragment	TRUE	canonical	3	26	junction_5	11.9094378852993	246	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAAAATGCTTGGTCAGT	NA	False	NA	NA	False	NA	NA	NA	127385174	127399286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127385845_127386297_127386475_127386670_127386759_127387368_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
28582	chr1	+	2647	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_10	116.353788428365	1	57	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9760	False	NA	NA	False	NA	NA	NA	175708353	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723734_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
28583	chr8	+	3089	12	NNC	ENSMUSG00000070002.8	novel	457	5	NA	NA	-388	-6	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	43.4330490763211	5	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAACCTCTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	70991718	71045502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70991896_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
28584	chr17	-	1858	15	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	2268	99	intron_retention	FALSE	non_canonical	0	0	junction_11	225.056330817012	1	15	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79242198	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234360_79236698_79236796_79238738_79238926_79239536_79239771_79242003
28585	chr3	+	1954	14	NNC	ENSMUSG00000027810.15	novel	2299	14	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	215.075795088932	49	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACATTTTAAATTTGTT	NA	False	NA	NA	False	NA	NA	NA	58433463	58464904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460090_58463046_58463073_58463993_58464060_58464541
28587	chr9	+	245	1	Intergenic	novelGene_1124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTGGCTGTCCTGGAAC	NA	False	NA	NA	False	NA	NA	NA	88338855	88339100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_88338900_88339100
28588	chr9	+	3399	1	Intergenic	novelGene_1125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCAGTCTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88339670	88343069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_88339700_88343100
28590	chr16	+	3584	6	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	574.173980601699	2058	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCTGCCTGGGTCTGAT	NA	False	NA	NA	False	NA	NA	NA	34842798	34929535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_34843006_34846194_34846313_34895957_34896065_34920125_34920248_34922315_34922495_34926684
28591	chr5	+	2923	19	NIC	ENSMUSG00000029599.14	novel	4322	20	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	129.971601836519	10	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGGAGTGTGGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	120751187	120765692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
28593	chr17	-	3924	4	Fusion	ENSMUSG00000117341.2_ENSMUSG00000046173.4	novel	588	4	NA	NA	4	-20	multi-exon	FALSE	canonical	1	2	junction_1	4.02768199119819	73	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAATTTTTTAAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	9945278	9885443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_9888971_9924446_9924688_9941118_9941218_9945221
28595	chr1	+	3639	8	NNC	ENSMUSG00000044835.16	novel	3714	7	NA	NA	5	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	42.3546735006532	331	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCATTACAGAATTTTATG	NA	False	NA	NA	False	NA	NA	NA	160970297	160998057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160970411_160978534_160978888_160982815_160982984_160988236_160988332_160990836_160990976_160991741_160991785_160995281_160995674_160995721
28597	chr11	+	1914	3	NIC	ENSMUSG00000020708.13	novel	1394	10	NA	NA	4694	-2	intron_retention	FALSE	canonical	3	2411	junction_1	184	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTACAACTCCAGTTTG	9230	False	NA	NA	False	NA	NA	NA	106151673	106153944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106151749_106152010_106153135_106153229
28598	chr11	+	2555	13	NNC	ENSMUSG00000059248.14	novel	3616	12	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	283.034290717966	6	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	3753	False	NA	NA	False	NA	NA	NA	117090541	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117090600_117109700_117109758_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248_117252055_117253048
28600	chr2	-	3312	15	NNC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	-7456	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	88.7632714997985	6	57	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84450378	84431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84432170_84432945_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262
28601	chr7	-	1711	8	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	426.128561610705	21	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACCCTCTGTGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	78798796	78783520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792222_78795018_78795127_78795369_78795493_78798642
28602	chr5	+	1665	12	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	55	-532	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	770.119235160138	10	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45650770	45669501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663677_45666763_45666860_45668449_45668560_45669222
28603	chr7	-	2616	9	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	20	0	intron_retention	FALSE	canonical	3	13	junction_6	145.055969801315	2	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976563	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125974238_125974376_125975845_125975912_125976008
28604	chr6	-	6751	23	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	35	-246	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	7.70799734953872	17	158	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCCCTCACTCTCACAC	NA	False	NA	NA	False	NA	NA	NA	113868296	113722876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113725810_113733792_113733976_113735879_113735988_113736083_113736296_113737602_113737817_113739725_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
28605	chr14	-	2839	15	FSM	ENSMUSG00000022218.17	ENSMUST00000168729.8	2852	15	3	10	3	0	multi-exon	FALSE	canonical	3	23	junction_14	53.0521499304684	376	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGTCTGTCTAGGCCAA	401	False	NA	NA	False	NA	NA	NA	55950946	55937475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950744
28606	chr11	-	3941	3	NNC	ENSMUSG00000020390.13	novel	1792	6	NA	NA	8242	406	intron_retention	FALSE	non_canonical	0	0	junction_2	396	32	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAGACTTTGTCACTTAT	NA	False	NA	NA	False	NA	NA	NA	51883064	51877087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51877638_51879438_51882497_51882731
28608	chr4	-	1796	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	49	573	9	-573	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	2757	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTGCTCATAAGGGGGA	-18	True	NA	NA	False	NA	NA	NA	40757874	40737114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
28610	chr1	-	2030	17	Fusion	ENSMUSG00000026034.18_ENSMUSG00000026035.16	novel	1796	13	NA	NA	4	-4	multi-exon	FALSE	canonical	2	3	junction_11	66.9911374735494	69	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATAAAGGTCTATAGCTT	NA	False	NA	NA	False	NA	NA	NA	58484637	58451162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
28611	chr18	+	1886	4	NIC	ENSMUSG00000024317.16	novel	2769	6	NA	NA	-12	1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	201.644902406847	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGCAGTTTTGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	21134952	21160585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_21135227_21150875_21150933_21153944_21154057_21159142
28613	chr5	-	3177	18	NIC	ENSMUSG00000006641.13	novel	3436	18	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_17	22.1293773649543	166	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	715	False	NA	NA	False	NA	NA	NA	31205441	31193379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
28614	chr7	+	2229	1	NIC	ENSMUSG00000030965.20	novel	2892	9	NA	NA	3508	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	132484611	132486840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_132484600_132486800
28615	chr9	-	4666	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176531.8	2310	7	37	-2393	-8	159	multi-exon	FALSE	canonical	3	44	junction_5	12.2031416719903	270	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGACTATTTTATTGAG	8014	False	NA	NA	False	NA	NA	NA	35111187	35095687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111152
28616	chr11	+	3179	12	NNC	ENSMUSG00000086255.2	novel	204	2	NA	NA	-5547	38523	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	57	12	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGACCGCGCCCGCCTA	3070	False	NA	NA	False	NA	NA	NA	95754432	95805729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95755688_95756581_95757103_95757575_95757794_95759173_95759316_95760058_95760252_95764690_95764774_95766921_95767103_95774766_95774806_95779631_95779740_95781798_95781941_95782586_95782800_95805645
28617	chr17	+	2990	5	Genic_Genomic	ENSMUSG00000073448.4_ENSMUSG00000067929.4	novel	842	1	NA	NA	-10211	548	multi-exon	FALSE	canonical	3	30	junction_1	5.44862367942584	36	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAATTCCATGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	21898876	21911569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_21899118_21900505_21900595_21904941_21905026_21906708_21906836_21909120
28618	chr4	-	2017	12	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	121.593823244603	4	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149251117	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244553_149246085_149246152_149249506_149249687_149250463_149250540_149251043
28619	chr2	-	2481	9	Antisense	novelGene_ENSMUSG00000027227.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	545	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCAGGACGCCGCGAGCG	NA	False	NA	NA	False	NA	NA	NA	122095727	122065010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_122065437_122076959_122076996_122079278_122079441_122083663_122083828_122087322_122087439_122089541_122089609_122090654_122090837_122093668_122093789_122094519
28622	chr10	-	1999	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	426	-190	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_11	591.279715937676	1	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTAACCTGCCCAGGGTT	NA	False	NA	NA	False	NA	NA	NA	127357807	127353197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127357741
28623	chr13	+	5502	1	Genic_Genomic	ENSMUSG00000091311.4	novel	NA	NA	NA	NA	3151	1641	mono-exon	FALSE	NA	NA	NA	NA	NA	16	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAATTGCTTCCTAAGGT	NA	False	NA	NA	False	NA	NA	NA	59863248	59868750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_59863200_59868800
28624	chrX	+	2415	11	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	242.73804810948	1	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	6195	False	NA	NA	False	NA	NA	NA	73348850	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354137_73354243_73354299_73354392
28625	chr19	+	2307	12	NNC	ENSMUSG00000015176.12	novel	2978	13	NA	NA	2649	71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	306.760897009192	1	88	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACATGGTAATAATTTT	2718	False	NA	NA	False	NA	NA	NA	46067141	46072971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46067198_46067311_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072025_46072189_46072283_46072450
28626	chr2	+	1953	11	ISM	ENSMUSG00000002718.15	ENSMUST00000168599.8	2748	23	19579	-525	4	-71	3prime_fragment	FALSE	canonical	3	747	junction_8	73.5744520876642	1	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTAAATCTACTTTC	NA	False	NA	NA	False	NA	NA	NA	166776678	166788238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
28627	chr1	+	1954	10	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	51	-246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	213.308852762061	15	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177610	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167195444
28628	chr11	+	2232	15	NNC	ENSMUSG00000020721.17	novel	687	5	NA	NA	-959	-19378	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	40.1365653432256	3	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGAGGGAGGCATGCCC	9459	False	NA	NA	False	NA	NA	NA	107437796	107517542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107437878_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360
28629	chr19	-	1926	10	NNC	ENSMUSG00000010095.14	novel	2813	10	NA	NA	-41	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1233.65597381458	1	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	9159	False	NA	NA	False	NA	NA	NA	8700603	8684933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685390_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
28631	chr11	-	1833	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	116	0	-30	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	639	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	NA	False	NA	NA	NA	40583485	40570140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
28632	chr16	+	2337	13	NIC	ENSMUSG00000022945.13	novel	1894	14	NA	NA	39	-1	intron_retention	FALSE	canonical	3	863	junction_6	46.2174810602607	34	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAAGTGTGTGTGCTGAC	4435	False	NA	NA	False	NA	NA	NA	93680857	93702997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
28633	chr10	-	2034	12	Antisense	novelGene_ENSMUSG00000019977.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGGGGGAGATGCATCCC	NA	False	NA	NA	False	NA	NA	NA	21244776	21218102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_21218463_21220975_21221098_21223162_21223312_21225212_21225284_21227823_21227943_21228437_21228508_21230535_21230646_21234213_21234301_21234628_21234740_21240573_21240673_21243538_21243684_21244185
28636	chr4	+	2748	12	NNC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-122	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	78.3039215635552	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTTGTTTGCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	99607266	99651693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650142
28638	chr11	-	1731	9	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	1860	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1079.25836080848	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACTTGCTGTTTTCTT	9689	False	NA	NA	False	NA	NA	NA	106887453	106879460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882918_106883410_106883518_106887334
28639	chr1	+	2755	13	FSM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	-16	0	-7	0	multi-exon	FALSE	canonical	2	42	junction_4	25.5582124222768	194	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	28	False	NA	NA	False	NA	NA	NA	75168787	75176031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
28640	chr8	+	4013	25	NNC	ENSMUSG00000031753.17	novel	2442	19	NA	NA	-35896	-3492	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	191	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTTCGGGTGCCGCGCG	317	False	NA	NA	False	NA	NA	NA	111537335	111573413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111537776_111538591_111538754_111539596_111539720_111540286_111540467_111541161_111541295_111542543_111542697_111542792_111542992_111544174_111544356_111547348_111547491_111548101_111548226_111550012_111550150_111550795_111550953_111552133_111552287_111552723_111552879_111558115_111558187_111560409_111560508_111562180_111562347_111563923_111564023_111564838_111564982_111566504_111566619_111567743_111567886_111568404_111568573_111569316_111569646_111571094_111571232_111573306
28641	chr17	-	1917	14	NNC	ENSMUSG00000023942.16	novel	2033	13	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	983.727369986999	3	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45910540	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896295_45896420_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901040_45901171_45901265_45903104_45903188_45910398
28642	chr3	-	2401	7	NNC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-402	3282	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTGAAACAACCGGAAGAG	-21	True	NA	NA	False	NA	NA	NA	89090002	89084779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89085373_89086399_89086529_89086621_89086744_89087556_89087688_89088035_89088195_89088480_89089350_89089604
28643	chr13	-	1839	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	96	7	39	-2	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCTAGTGGTTCCTTTTC	NA	False	NA	NA	False	NA	NA	NA	59917528	59903229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
28644	chr9	-	2116	4	Antisense	novelGene_ENSMUSG00000032469.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	151	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTCAAAATGACCTTAAATT	NA	False	NA	NA	False	NA	NA	NA	99466258	99461421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_99462415_99464072_99464154_99464367_99464514_99465362
28645	chr9	-	3501	19	NNC	ENSMUSG00000036777.9	novel	4605	24	NA	NA	-1252	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	170.124754514931	1	82	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATAATTGTAAATTGTC	NA	False	NA	NA	False	NA	NA	NA	22284772	22243331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22260542_22260597_22262215_22262354_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436
28646	chr2	+	2156	16	NNC	ENSMUSG00000027642.16	novel	1944	17	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	589.149156741219	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTCCCAGTGTTGATGG	NA	False	NA	NA	False	NA	NA	NA	157125502	157167967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163788_157167677
28648	chr14	+	1889	6	NNC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	27	1129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1456.0072252568	30	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACAGCAGAGTGAC	NA	False	NA	NA	False	NA	NA	NA	58035747	58040921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_58035812_58035944_58036055_58038016_58038131_58038950_58039074_58039378_58040732_58040796
28649	chr2	+	2275	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	151	344	43	-344	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	19	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGCCCTGAGATACTG	NA	False	NA	NA	False	NA	NA	NA	121244406	121268824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
28650	chr2	+	2988	1	NIC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	6547	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	21	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGACTCCTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	162923619	162926607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_162923600_162926600
28652	chr13	+	4012	27	FSM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	8	1	8	-1	multi-exon	FALSE	canonical	3	310	junction_8	45.9393251760748	367	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCTCTCCTAATCCTTA	NA	False	NA	NA	False	NA	NA	NA	94495475	94702824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
28654	chr5	-	3370	6	NIC	ENSMUSG00000029103.17	novel	1573	7	NA	NA	-8	84	intron_retention	FALSE	canonical	3	809	junction_2	82.8251169633946	7	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAGCCCTCGAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	35263048	35250328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_35250731_35252193_35252371_35253319_35255618_35256500_35256623_35259738_35259884_35262822
28655	chr1	+	2584	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	34	227	5	-227	multi-exon	FALSE	canonical	3	576	junction_4	38.3577313661217	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTGTGGTTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	71596342	71618563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
28656	chr15	-	3893	17	NNC	ENSMUSG00000023169.16	novel	7266	16	NA	NA	-504	1393	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	137.705740961479	2	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATATTTATTTGCAGGAA	NA	False	NA	NA	False	NA	NA	NA	96541298	96472474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371_96540516_96541216
28657	chr2	+	1646	10	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	44	junction_6	764.283897869901	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAGTATGTGTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	130116349	130121225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118574_130119395_130119545_130119768_130119891_130120075_130120211_130120816
28659	chr19	-	1500	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	75	86	-23	-21	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTCCACACCCTAGCCT	6501	False	NA	NA	False	NA	NA	NA	4062731	4057582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
28661	chr13	-	2644	7	NIC	ENSMUSG00000021302.11	novel	1340	7	NA	NA	-1	-3	intron_retention	FALSE	canonical	2	4	junction_1	112.641639232075	52	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTCAATGTTAATTTGC	NA	False	NA	NA	False	NA	NA	NA	14238004	14225246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14226716_14226862_14226979_14228494_14229041_14229734_14229806_14232380_14232474_14233903_14234039_14237790
28662	chr9	+	2597	6	NIC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	7	-27	intron_retention	FALSE	canonical	3	355	junction_3	36.2082863444267	20	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAAAGTTTTATGTCGGC	NA	False	NA	NA	False	NA	NA	NA	20927287	20940086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938977_20939066
28663	chr13	+	1639	8	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	668.031222538074	20	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588067	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606361_3614592_3614685_3614858_3614914_3614995
28664	chr12	-	1361	9	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3808.28875612131	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	111638734	111635794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111635977_111636060_111636176_111636258_111636445_111636589_111636729_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
28666	chr11	-	515	3	ISM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	6973	0	1178	0	3prime_fragment	FALSE	canonical	3	18443	junction_2	655	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33106099	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002
28667	chr11	+	1575	2	Antisense	novelGene_ENSMUSG00000025580.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGCACCCGACTGCTCT	NA	False	NA	NA	False	NA	NA	NA	119179194	119180924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_119180374_119180528
28668	chr6	-	1704	13	FSM	ENSMUSG00000004980.17	ENSMUST00000203954.3	1703	13	2	-3	0	3	multi-exon	FALSE	canonical	3	287	junction_2	3043.32879243911	1121	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTGTAATGCTTACACA	NA	False	NA	NA	False	NA	NA	NA	51446825	51438097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
28669	chr9	-	3396	7	NIC	ENSMUSG00000003131.8	novel	6873	6	NA	NA	-12	2363	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	174.484717573393	20	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGAGTCCACTGTCATT	4116	False	NA	NA	False	NA	NA	NA	45896145	45877618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45895148_45895338_45896002
28670	chr10	-	2750	8	Antisense	novelGene_ENSMUSG00000039994.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTCAGGGCTCCACAGA	NA	False	NA	NA	False	NA	NA	NA	128088799	128085256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128085300_128085387_128085509_128085594_128085679_128085835_128085979_128086152_128086483_128086561_128087751_128087856_128087956_128088058
28671	chr7	-	2719	11	NNC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	22	-3	intron_retention	FALSE	non_canonical	0	0	junction_4	134.476763792114	1	56	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCTGACTGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	125976561	125969241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125969586_125969906_125970079_125970349_125971320_125971583_125971623_125971666_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
28672	chr15	-	2350	15	NNC	ENSMUSG00000023169.16	novel	6966	16	NA	NA	17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	167.78157873636	5	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACAATGGTTTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	96540263	96473870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96474694_96476410_96476518_96476680_96476744_96477195_96477310_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
28673	chr2	+	2899	19	FSM	ENSMUSG00000027263.13	ENSMUST00000138601.8	2915	19	12	4	6	-4	multi-exon	FALSE	canonical	3	47	junction_18	57.833947056195	126	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGTCTGGCCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	121001701	121029246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
28674	chr6	+	2121	15	NNC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	153.966882869038	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	NA	False	NA	NA	NA	40302428	40373696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343716_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
28675	chr15	-	2080	2	FSM	ENSMUSG00000061360.9	ENSMUST00000230134.2	854	2	-1085	-141	-1085	141	multi-exon	FALSE	canonical	2	6	junction_1	0	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCCGTTAACTTTGAACG	NA	False	NA	NA	False	NA	NA	NA	81752883	81749528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81750094_81751368
28676	chr17	+	2627	8	ISM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	25957	8	-524	-8	3prime_fragment	FALSE	canonical	3	1436	junction_6	91.8814675635552	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCCAGCGCGTGTCTCGT	NA	False	NA	NA	False	NA	NA	NA	71949166	71966018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
28677	chrX	-	2514	11	NIC	ENSMUSG00000031402.13	novel	2525	12	NA	NA	5	372	intron_retention	FALSE	canonical	3	210	junction_5	20.4068615911414	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCGTGACCCTGTAACTC	NA	False	NA	NA	False	NA	NA	NA	74174587	74153881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
28678	chr5	-	3630	21	FSM	ENSMUSG00000029456.13	ENSMUST00000111770.2	3626	21	-2	-2	-2	0	multi-exon	FALSE	canonical	3	24	junction_2	12.9348366823861	87	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTTCTGAGCTAGATTT	NA	False	NA	NA	False	NA	NA	NA	121798579	121759088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076_121794277_121798355
28680	chr2	+	1812	1	FSM	ENSMUSG00000081272.2	ENSMUST00000119733.2	1308	1	-58	-446	-58	446	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAACAATAGAGTGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	49198108	49199920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_49198100_49199900
28681	chr14	-	2734	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	161	11	-45	-1	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	194	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTTTTATTTCATGTG	NA	False	NA	NA	False	NA	NA	NA	52516841	52499226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
28683	chr17	+	3028	8	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	61	-14	intron_retention	FALSE	canonical	3	87	junction_1	85.9499142239365	11	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGAGACCATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	15720282	15737675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
28684	chr11	-	2959	10	NIC	ENSMUSG00000010025.20	novel	3091	10	NA	NA	4	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	35.2801836449967	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTGTTAATTTTGAC	1081	False	NA	NA	False	NA	NA	NA	61158263	61135677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61158064
28685	chr15	-	2269	3	ISM	ENSMUSG00000116295.2	ENSMUST00000229999.2	510	4	2	-1195	1	939	intron_retention	FALSE	canonical	3	712	junction_2	16.5	8	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCACTGTTGCTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	97065122	97057874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_97059277_97059835_97059964_97064383
28686	chr6	+	2153	2	Genic_Genomic	ENSMUSG00000037827.6	novel	1479	1	NA	NA	-45	708	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	128621830	128624062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_128622012_128622090
28687	chr3	-	2434	11	NNC	ENSMUSG00000028114.17	novel	2741	11	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	82.8275316546376	7	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTAAGTTTGTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	123179627	123161949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179583
28688	chr15	-	3225	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	70	4	-13	-2	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	1	151	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTTTGAGCTATAATGT	NA	False	NA	NA	False	NA	NA	NA	83033515	83010180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
28689	chr13	+	3939	9	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	102	24534	3	1940	intron_retention	FALSE	canonical	3	649	junction_6	91.2269662709442	14	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCACATATGTATAAAATAA	1312	False	NA	NA	False	NA	NA	NA	59733210	59759202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958
28690	chr2	-	4782	4	Antisense	novelGene_ENSMUSG00000026848.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACTGAACTTCCGGTACG	NA	False	NA	NA	False	NA	NA	NA	30849016	30842983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30843235_30843762_30845961_30846454_30846597_30846825
28691	chr2	+	2353	10	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	-3	-67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1093.79063381311	2	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTTGTGAAAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	34662103	34666476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663836_34663946_34664039_34664283_34664392_34664431_34664546_34664785_34665077_34665246_34665562
28692	chr18	-	2584	13	NIC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	0	-1	intron_retention	TRUE	canonical	3	22	junction_12	99.8294030945904	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAAAAGTGTGAATG	NA	False	NA	NA	False	NA	NA	NA	12996437	12888395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996128
28693	chr8	-	1643	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	-20	681	-20	-233	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTCATGAGTCAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	110419912	110398637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
28695	chr14	+	2672	15	Antisense	novelGene_ENSMUSG00000023110.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCGCGCGGCCCACGCCG	NA	False	NA	NA	False	NA	NA	NA	54744905	54754818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_54745407_54746350_54746416_54746746_54746865_54747000_54747103_54747295_54747401_54748335_54748511_54748596_54748716_54748797_54749037_54749449_54749614_54750750_54750912_54752053_54752102_54752229_54752345_54752759_54752894_54753561_54754071_54754701
28696	chr6	+	2547	3	FSM	ENSMUSG00000030245.11	ENSMUST00000146508.2	367	3	-32	-2148	0	0	multi-exon	FALSE	canonical	3	32	junction_1	306	68	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	142332946	142349584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_142333096_142341913_142341996_142347268
28697	chr15	-	984	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	632	0	-632	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTTGAGCCAGCCAACC	158	False	NA	NA	False	NA	NA	NA	98832319	98829937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
28700	chr4	+	2147	8	ISM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	1222	1076	340	-12	3prime_fragment	FALSE	canonical	3	1814	junction_1	386.53790373055	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAAAGTGTTTCCAGTGT	607	False	NA	NA	False	NA	NA	NA	40723701	40733888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
28701	chr16	+	2025	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	-35	6	-35	-1	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	1442	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTAGTTTGATATGGTA	NA	False	NA	NA	False	NA	NA	NA	18631008	18654005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
28702	chr7	-	1271	5	FSM	ENSMUSG00000030629.16	ENSMUST00000208519.2	899	5	-27	-345	-1	345	multi-exon	FALSE	canonical	3	57	junction_4	273.853405127634	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATTTCCAGATACTTCC	NA	False	NA	NA	False	NA	NA	NA	84328601	84269314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
28703	chr11	+	3395	9	ISM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	22128	8	6193	-8	3prime_fragment	FALSE	canonical	3	37	junction_1	30.5856890555044	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGACATTGAGTGCAT	NA	False	NA	NA	False	NA	NA	NA	83386045	83397561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
28704	chr5	-	2904	7	ISM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	46	4194	-35	-4	intron_retention	FALSE	canonical	3	234	junction_6	23.4591844132172	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGCCCAGCAGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	31117659	31112390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059
28705	chr10	-	2891	2	ISM	ENSMUSG00000090841.3	ENSMUST00000217733.2	1668	5	15	-4	8	3	intron_retention	FALSE	canonical	3	2545	junction_1	0	59	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCTTTCTTTCTTTCCTG	8260	False	NA	NA	False	NA	NA	NA	128329708	128326725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128328006_128328097
28706	chr1	-	5575	13	FSM	ENSMUSG00000070939.10	ENSMUST00000095014.8	5607	13	-50	82	-35	-62	multi-exon	FALSE	canonical	3	11	junction_11	15.5393765068687	49	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTAATTCTTTGTCCTT	7733	False	NA	NA	False	NA	NA	NA	43137832	43086441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771_43095916_43098257_43098316_43099039_43099382_43101676_43101760_43106633_43106789_43110620_43110816_43114410_43115113_43136011_43136210_43137429
28708	chr13	-	1477	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.944400230224	437	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311616_34311747_34312210_34312299_34312515_34312854_34312966_34313228_34313338_34314159
28710	chrX	-	4530	1	Antisense	novelGene_ENSMUSG00000002014.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	68	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAACCTGCCCCTGTAAA	NA	False	NA	NA	False	NA	NA	NA	72836429	72831899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72831900_72836400
28711	chr17	-	1240	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-214	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821662	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
28714	chr19	-	5274	10	NIC	ENSMUSG00000054611.18	novel	8578	21	NA	NA	-37	23	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	36.3402983470227	141	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAACCCCTTTCATTTT	4216	False	NA	NA	False	NA	NA	NA	4383984	4366174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4369310_4370179_4370396_4370925_4371085_4372414_4372579_4374364_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4383670
28715	chr5	+	1526	12	Antisense	novelGene_ENSMUSG00000065514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTGGCGCGAAACGTCG	958	False	NA	NA	False	NA	NA	NA	138163144	138170114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_138163152_138165475_138165700_138165810_138165896_138166101_138166235_138166319_138166434_138166593_138166745_138167071_138167210_138167359_138167527_138167600_138167734_138167819_138167985_138168576_138168659_138169987
28716	chr7	-	1217	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	214	-89	214	89	mono-exon	FALSE	NA	NA	NA	NA	NA	10	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATGGTG	NA	False	NA	NA	False	NA	NA	NA	116424872	116423655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_116423700_116424900
28717	chr4	+	2065	2	ISM	ENSMUSG00000085101.8	ENSMUST00000150529.2	545	3	1921	-1681	1921	1681	3prime_fragment	FALSE	canonical	3	82	junction_1	0	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAAAGAGTATCTGGCA	NA	False	NA	NA	False	NA	NA	NA	145138756	145178007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_145138851_145176036
28718	chr3	+	1240	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	34	775	-14	78	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	87	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGGAGCGCAGTATTTA	NA	False	NA	NA	False	NA	NA	NA	121220179	121251081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
28719	chr2	-	2216	19	NNC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	1050.30220812634	1	52	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGCAGTGTGCTCATTA	NA	False	NA	NA	False	NA	NA	NA	156022053	155989863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156012250_156012402_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021153_156021806
28720	chr1	+	3217	1	FSM	ENSMUSG00000039224.2	ENSMUST00000045108.2	3212	1	268	-273	268	273	mono-exon	FALSE	NA	NA	NA	NA	NA	82	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTATGGTTTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	186699880	186703097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_186699900_186703100
28721	chr2	-	2056	3	FSM	ENSMUSG00000025816.16	ENSMUST00000124859.2	676	3	-417	-963	-417	-1	multi-exon	FALSE	canonical	3	257	junction_2	41	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAAACTGTTGCAGTTG	NA	False	NA	NA	False	NA	NA	NA	5880024	5875840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_5876833_5878553_5878631_5879037
28722	chr17	-	2562	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	-212	7	-212	2	multi-exon	FALSE	canonical	1	168	junction_4	135.039586788467	1100	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	9481	False	NA	NA	False	NA	NA	NA	34109847	34094639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
28723	chr7	-	2533	3	NIC	ENSMUSG00000074129.15	novel	658	8	NA	NA	-26	0	intron_retention	FALSE	canonical	3	16202	junction_2	696	3	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778076	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44776517_44776632
28724	chr10	+	1680	5	Antisense	novelGene_ENSMUSG00000019773.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGCCGCAAAACTCGGGC	NA	False	NA	NA	False	NA	NA	NA	5749154	5755333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5749821_5750251_5750435_5751150_5751243_5751868_5752531_5755256
28725	chr1	-	3685	3	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	6892	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	500.5	3	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTGTGGGTGCCTGGT	NA	False	NA	NA	False	NA	NA	NA	167057512	167050451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_167054037_167055300_167055350_167057461
28726	chr14	-	2682	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	-33	0	-26	0	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	284	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTTGTTGTCTATTC	NA	False	NA	NA	False	NA	NA	NA	69970016	69954448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
28727	chr4	+	2753	15	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	83.7823955011932	10	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTGCTTTCTTGTGTG	8	True	NA	NA	False	NA	NA	NA	11558954	11615796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610441_11612371_11612439_11612617_11612819_11615442
28728	chr5	+	2588	6	NNC	ENSMUSG00000029581.15	novel	2157	6	NA	NA	13	0	intron_retention	FALSE	canonical	0	0	junction_1	1109.30194266485	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCGTGTGTGTCTCAGG	NA	False	NA	NA	False	NA	NA	NA	142946110	142958938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142946381_142946452_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
28729	chr6	+	4048	1	NIC	ENSMUSG00000040370.14	novel	872	3	NA	NA	3	268	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	100	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTACGAGGAGAAGTACTG	NA	False	NA	NA	False	NA	NA	NA	145156914	145160962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_145156900_145161000
28730	chr13	+	3221	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2892	-1	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_1	63.2334739060114	261	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGGAGTGTTTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	35922403	36058045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35922622_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
28731	chr7	+	2398	10	NIC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	5	-4	intron_retention	FALSE	canonical	3	1130	junction_7	69.0812725868757	971	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAACCTGCACATCTCAT	NA	False	NA	NA	False	NA	NA	NA	15832567	15851896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
28733	chr3	+	2424	16	NNC	ENSMUSG00000028256.17	novel	2425	16	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	18.7538440503985	181	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	NA	NA	NA	144824328	144859650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_144824548_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
28734	chr5	+	1634	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-35	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1353.29752977002	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTATAACAATATATTCTC	721	False	NA	NA	False	NA	NA	NA	77099588	77115341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112373_77114637
28735	chr9	+	3278	9	Intergenic	novelGene_1074	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGATTGCCCGAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	58125836	58157033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58126011_58127104_58127853_58128997_58129152_58136640_58136691_58137110_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156825
28736	chr19	+	1092	4	ISM	ENSMUSG00000024740.11	ENSMUST00000236722.2	714	5	-74	1015	13	476	5prime_fragment	FALSE	canonical	3	3390	junction_2	149.466458519034	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTGACTTGCTGGCTC	679	False	NA	NA	False	NA	NA	NA	10582999	10586309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614
28737	chr19	+	2081	6	ISM	ENSMUSG00000024740.11	ENSMUST00000236280.2	1380	11	4569	-859	-265	641	3prime_fragment	FALSE	canonical	3	2939	junction_3	147.784978938998	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAACTTATGGATTCTA	5199	False	NA	NA	False	NA	NA	NA	10587519	10593813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851
28738	chr1	+	3388	19	NNC	ENSMUSG00000036155.14	novel	8436	18	NA	NA	-40	160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.43241991988774	16	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAGCCCCACCCCGTCA	NA	False	NA	NA	False	NA	NA	NA	127132711	127411601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_127132792_127177526_127177577_127234370_127234754_127248340_127248503_127292884_127292962_127294139_127294230_127310657_127310730_127312504_127312667_127315079_127315250_127318480_127318616_127325243_127325378_127339863_127339998_127373978_127374129_127387572_127387720_127396928_127397046_127399237_127399313_127407201_127407360_127410263_127411258_127411503
28739	chr17	-	2454	14	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-5018	2	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_8	10.3443664455472	270	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGACCCCCCCTCTCCTT	3106	False	NA	NA	False	NA	NA	NA	29408095	29376887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29408003
28740	chr1	+	2866	4	ISM	ENSMUSG00000042751.15	ENSMUST00000043313.15	4626	11	138908	1201	431	-1104	3prime_fragment	FALSE	canonical	3	223	junction_2	11.8415464455544	9	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCAGTGATCCCATCATT	NA	False	NA	NA	False	NA	NA	NA	152969656	152993806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_152969860_152987887_152987990_152988125_152988194_152991313
28741	chr19	+	3148	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	177	28	-23	-28	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGGAAGTTTAATTGTG	NA	False	NA	NA	False	NA	NA	NA	6326931	6350098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
28742	chr17	+	2594	19	NIC	ENSMUSG00000024078.8	novel	2838	20	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	38.2422428186746	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGTGATGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	75024742	75170565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
28743	chr15	+	2151	13	NNC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	692.280585978129	2	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGCTAGTCATTTATT	200	False	NA	NA	False	NA	NA	NA	38662192	38692688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_38662332_38673100_38673265_38674140_38674209_38674873_38675061_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687259_38687354_38689368_38689467_38690776_38690904_38691855
28744	chr9	-	2701	5	FSM	ENSMUSG00000025894.12	ENSMUST00000212897.2	2519	5	-12	-170	-12	-1	multi-exon	FALSE	canonical	3	33	junction_3	415.72677325378	47	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTTTAGGGCTTGACAT	-15	True	NA	NA	False	NA	NA	NA	4309483	4294794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693_4308920_4309287
28745	chr2	-	1708	12	Antisense	novelGene_ENSMUSG00000027248.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.14991914915214	7	31	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCCCAACCCCCTAGGC	2945	False	NA	NA	False	NA	NA	NA	121268461	121244409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_121244684_121252925_121253007_121255003_121255121_121257070_121257185_121259936_121260065_121262132_121262250_121262754_121262879_121263995_121264089_121265267_121265398_121266401_121266481_121266836_121266899_121268072
28746	chr17	-	2148	5	Antisense	novelGene_ENSMUSG00000003198.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCCCTCAGACCCGAGC	NA	False	NA	NA	False	NA	NA	NA	56205932	56199106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56199186_56199756_56199861_56202820_56202945_56203137_56203200_56204153
28748	chr15	-	2785	9	NNC	ENSMUSG00000022365.7	novel	3175	8	NA	NA	77	-272	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.412729979329	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCTGTCTGTGTTAAGT	NA	False	NA	NA	False	NA	NA	NA	57755767	57733169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_57735157_57735197_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
28749	chr4	+	4186	15	FSM	ENSMUSG00000042408.14	ENSMUST00000046751.13	4210	15	15	9	1	-9	multi-exon	FALSE	canonical	2	12	junction_1	19.4952898550038	82	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGAAAATGTAGCCTTTA	2759	False	NA	NA	False	NA	NA	NA	126971190	127018154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_126971394_126972200_126972340_126980767_126980835_126982121_126982348_126986704_126986877_126994402_126994554_126995641_126995758_126997204_126997481_126998063_126998215_126999066_126999240_127000368_127000517_127002340_127002509_127003717_127003756_127014220_127014366_127016141
28750	chr11	-	1749	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	21	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1252.4809601569	25	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGGGATTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	120472429	120468939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469826_120469912_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
28752	chrX	+	1768	15	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	0	443	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1243.38569220972	9	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCTGCTTTGTACCTTGT	NA	False	NA	NA	False	NA	NA	NA	20524659	20548887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536976_20537113_20537594_20537693_20537928_20538076_20538209_20538282_20547696_20547754_20548141_20548244_20548347_20548449_20548616
28754	chr13	+	2643	6	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	57781	6861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3894	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGAAGGCCGAGTGGAG	NA	False	NA	-78	True	NA	NA	NA	97265931	97274382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97267736_97268349_97268541_97270038_97270226_97271800_97271953_97272028_97272219_97274263
28755	chr2	+	2247	9	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	131	-80	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	884.378303880754	4	72	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACACTGGTCTAATTTT	NA	False	NA	NA	False	NA	NA	NA	34662241	34666463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562_34665710_34665860
28756	chr14	+	2795	1	Intergenic	novelGene_588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCACTCGGCCCCAGAGC	NA	False	NA	NA	False	NA	NA	NA	63742477	63745272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_63742500_63745300
28757	chr14	+	199	1	Intergenic	novelGene_589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAGCAGACAACCTAGAA	NA	False	NA	NA	False	NA	NA	NA	63745372	63745571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_63745400_63745600
28758	chr14	+	635	1	Antisense	novelGene_ENSMUSG00000021953.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCACGTGCGGAGTCAAG	NA	False	NA	NA	False	NA	NA	NA	63745571	63746206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_63745600_63746200
28760	chr13	+	1892	8	NIC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	-62	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	340.707427304437	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGACCAGTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	85337464	85361838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_85337772_85338872_85338996_85344370_85344445_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
28761	chr14	-	2265	10	NNC	ENSMUSG00000021965.4	novel	2260	9	NA	NA	31	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	88.6914473864655	5	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTTATGTTGCCAACT	NA	False	NA	NA	False	NA	NA	NA	58063534	58044018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58061762_58061855_58063466
28763	chr6	+	3814	13	FSM	ENSMUSG00000029763.18	ENSMUST00000132842.8	3686	13	11	-139	3	139	multi-exon	FALSE	canonical	1	2	junction_12	39.1396183198332	22	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTGTCTTAATTTGAAT	NA	False	NA	NA	False	NA	NA	NA	33226073	33795196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33793270
28765	chr6	-	3422	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	25	0	-24	0	multi-exon	FALSE	canonical	3	75	junction_8	9.18095855561934	169	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	-16	True	NA	NA	False	NA	NA	NA	30693723	30653455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
28766	chr6	+	1948	8	NIC	ENSMUSG00000068328.11	novel	1826	10	NA	NA	0	2	intron_retention	FALSE	canonical	3	960	junction_6	81.9925332588528	534	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTCTCTGTTGCCTCTTT	5423	False	NA	NA	False	NA	NA	NA	83031711	83034661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83034075_83034256_83034376_83034478
28767	chr6	+	3182	13	NIC	ENSMUSG00000016487.16	novel	5118	18	NA	NA	5386	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	103.351611286692	85	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGTATTTGTCATTG	NA	False	NA	NA	False	NA	NA	NA	146917762	146933521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_146917892_146918358_146918392_146920531_146920680_146920957_146921087_146922798_146922950_146923643_146923756_146923859_146923949_146927012_146927136_146927652_146927779_146928805_146928995_146931058_146931236_146931580_146931647_146931811
28768	chr8	+	2422	3	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	64	-6	intron_retention	FALSE	canonical	3	20484	junction_1	1553	16	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAAGCTGGGTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	123829152	123831977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123829185_123829391_123829726_123829921
28769	chr1	+	3188	10	NIC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	-6	-837	intron_retention	FALSE	canonical	3	766	junction_1	82.247743786834	4	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCCAGCTAGCAATTGATC	NA	False	NA	NA	False	NA	NA	NA	93406736	93433904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265
28770	chr2	-	2824	16	NNC	ENSMUSG00000039195.5	novel	2618	2	NA	NA	3565	13664	intron_retention	FALSE	non_canonical	0	0	junction_1	0	119	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAATTGTGTCACTTAAAT	NA	False	NA	NA	False	NA	NA	NA	32268309	32253444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32253668_32253815_32253990_32254228_32254345_32257312_32257543_32260041_32260136_32260251_32260355_32260873_32261420_32261646_32261769_32262308_32262504_32264349_32264479_32265496_32265583_32266018_32266133_32266275_32266437_32267299_32267374_32267519_32267640_32267972
28771	chr3	+	2901	27	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.585230235698	2	85	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTCGTGGTGTCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	54600284	54636181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600390_54600444_54600524_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614564_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
28773	chr10	-	2169	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	570	-1545	570	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTGAGATTTAAAAAAAAAA	3032	False	NA	NA	False	NA	NA	NA	41930732	41928563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41928600_41930700
28774	chr2	+	3691	15	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	23	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	78.7649888553776	1	129	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAAGCCATATGTGTG	NA	False	NA	NA	False	NA	NA	NA	128942969	128968503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965819_128967308
28776	chr2	+	1642	7	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-63	-2	combination_of_known_junctions	FALSE	canonical	3	132	junction_3	804.665855426269	41	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTATTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	130118156	130121230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130118544_130118626_130118779_130118951_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120816
28777	chr13	-	2157	7	NIC	ENSMUSG00000021477.10	novel	1971	8	NA	NA	-1	-582	intron_retention	FALSE	canonical	3	1187	junction_3	102.793752512278	4	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGACTTCAGTGTGTAA	NA	False	NA	NA	False	NA	NA	NA	64518121	64511609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64515821_64515929_64516053_64516841_64516979_64518049
28778	chr18	+	1658	8	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	782	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	401.421352248253	1	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	68438849	68454978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68439271_68440716_68440859_68446831_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
28779	chr16	-	3794	12	NIC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	7	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	436.389128043287	2	161	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTACGCATTCCTGCAA	7596	False	NA	NA	False	NA	NA	NA	22258359	22200069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
28780	chr14	-	2665	7	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-1	1207	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	106.531163932855	48	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	NA	False	NA	NA	NA	21102264	21084874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21102207
28781	chr8	+	3602	18	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	2613	14132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	143	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGCCACAGAAGCCGGCCG	NA	False	NA	-33	True	NA	NA	NA	73214346	73228977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73215202_73215279_73215463_73215589_73215688_73215823_73215949_73216022_73216165_73216247_73216344_73216655_73216781_73216924_73217159_73217927_73218364_73220225_73220403_73221606_73221890_73222046_73222137_73222221_73222367_73223710_73223820_73224002_73224071_73224713_73224899_73228454_73228630_73228901
28782	chr4	+	2408	3	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14303	772	multi-exon	FALSE	canonical	3	28	junction_1	34.5	11	93	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145159006	145178230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145176036
28783	chr19	-	2552	6	NNC	ENSMUSG00000074733.15	novel	2568	4	NA	NA	-2	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	20.8518584303654	35	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTTTAAAGTGATATCA	NA	False	NA	NA	False	NA	NA	NA	61129210	61106583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_61107079_61107148_61108891_61115444_61115506_61115875_61116003_61124801_61124861_61129142
28784	chr17	+	2573	11	NIC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	2	-3	intron_retention	FALSE	canonical	3	220	junction_6	32.4598213180541	187	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTGCCTGGCTCTCCTT	9225	False	NA	NA	False	NA	NA	NA	57071758	57077089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
28785	chr13	-	2181	16	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	-12	-26	intron_retention	FALSE	canonical	3	642	junction_9	45.3725320724628	842	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAGCACAATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	55684346	55678254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
28786	chrX	+	2046	7	FSM	ENSMUSG00000094378.8	ENSMUST00000101180.8	2029	7	-17	0	-17	0	multi-exon	TRUE	canonical	1	1	junction_6	4.6785562825394	597	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	148567451	148609690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_148567561_148582582_148582709_148583428_148583509_148587159_148588119_148601122_148601205_148602010_148602061_148609050
28787	chr14	+	2966	9	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	6	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	23.1179043167844	5	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAAGAGAGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	70004926	70021849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015161_70015265_70017952_70018023_70019680_70020829_70021032
28788	chr17	-	4420	4	NNC	ENSMUSG00000117654.2	novel	1195	2	NA	NA	100	7543	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	0.942809041582063	45	59	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAATTTTAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	33096816	33075092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33079037_33082096_33082315_33083417_33083596_33096736
28789	chr1	-	2449	21	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCCCTGGGAGCAGAGG	4863	False	NA	NA	False	NA	NA	NA	87645799	87604011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87604088_87609206_87609290_87609406_87609479_87611462_87611589_87619346_87619454_87623057_87623166_87625095_87625266_87625831_87625949_87626752_87626848_87627366_87627496_87628877_87628990_87629135_87629225_87630838_87630921_87633654_87633745_87635816_87635931_87637337_87637421_87638784_87638870_87639757_87639902_87640913_87641010_87642757_87642839_87645409
28790	chr10	+	1887	8	Genic_Genomic	ENSMUSG00000085572.2	novel	815	6	NA	NA	-9460	37159	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2198	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTTCCTACTCGCCGGT	7439	False	NA	NA	False	NA	NA	NA	14530503	14581221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_14531589_14536808_14536895_14543673_14543855_14551678_14551787_14559807_14559884_14560624_14560753_14563357_14563451_14581091
28791	chr12	+	2336	12	FSM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	290	-418	112	-3	multi-exon	FALSE	canonical	3	389	junction_11	306.963561516955	1661	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTGTTGTAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	17595084	17601503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_17595170_17597096_17597195_17597283_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
28792	chr15	-	2090	7	NNC	ENSMUSG00000000934.10	novel	1903	14	NA	NA	20	112	intron_retention	FALSE	canonical	1	2	junction_4	37.8769938969114	2	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCCATCCGCTATAAGAA	NA	False	NA	NA	False	NA	NA	NA	75550629	75539310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547305_75547413_75547867_75547981_75550501
28793	chr15	-	1600	6	ISM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	11605	8	1539	-8	3prime_fragment	FALSE	canonical	3	96	junction_4	4.22374241638857	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGGGGAAGGTGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	75539044	75528891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101
28794	chr17	-	4802	11	FSM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	235	2021	6	-4	multi-exon	FALSE	canonical	3	53	junction_4	22.2551117723547	51	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGACAAATACAAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	30795227	30436518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
28795	chr1	+	2558	1	Antisense	novelGene_ENSMUSG00000033845.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACCCATTTAAAAAGGTAA	5395	False	NA	NA	False	NA	NA	NA	4850993	4853551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_4851000_4853600
28796	chr15	-	3024	17	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	4430	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.8755387797571	1	91	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAAGCTGTGTCAGCCCC	8131	False	NA	NA	False	NA	NA	NA	98556309	98543021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543128_98543168_98543899_98544224_98544364_98545048_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110
28797	chr1	-	1832	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	18	816	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	893.748671327684	3488	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAGTCTCTCGTGAGATC	2356	False	NA	NA	False	NA	NA	NA	93729610	93719481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93728464_93728633_93729419
28799	chr19	-	1768	10	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	981.770333456008	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCACCCCTGCCTCATGAG	NA	False	NA	NA	False	NA	NA	NA	8691236	8684949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8690765_8690839
28800	chr2	-	2962	14	ISM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	571	7	-370	-6	3prime_fragment	FALSE	canonical	3	280	junction_8	42.2567525502691	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGACTCCTATTCTCCT	NA	False	NA	NA	False	NA	NA	NA	32583626	32572627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604
28803	chr2	-	1748	15	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	19	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	100.25518460816	1	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTTGGGTTTCTCTAGC	NA	False	NA	NA	False	NA	NA	NA	164699612	164681441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688637_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
28804	chr11	-	846	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	54	900	54	-900	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCAATATTACTTAGCTT	1901	False	NA	NA	False	NA	NA	NA	59119042	59103139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
28805	chr5	+	1631	2	Genic_Genomic	ENSMUSG00000070697.5	novel	1629	1	NA	NA	-53	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	3	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGTTTGTAATACC	NA	False	NA	NA	False	NA	NA	NA	88702267	88703945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_88702710_88702756
28806	chr11	-	467	1	Intergenic	novelGene_2425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATCATTGCCTTGTCCTT	869	False	NA	NA	False	NA	NA	NA	82889714	82889247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_82889200_82889700
28807	chr8	-	2115	9	NNC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	0	503	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	161.978731242716	12	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACTCACTCTCTAAACC	NA	False	NA	NA	False	NA	NA	NA	108151683	108138614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148194_108151369_108151503_108151597
28808	chr8	+	1164	8	FSM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	19	8	-19	-1	multi-exon	FALSE	canonical	3	724	junction_4	79.3373062516324	2259	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATACGGCTCTTCTAGTGT	NA	False	NA	NA	False	NA	NA	NA	61343503	61360606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
28811	chrX	-	2556	11	FSM	ENSMUSG00000025268.16	ENSMUST00000145342.8	2572	11	15	1	5	-1	multi-exon	FALSE	canonical	3	154	junction_8	16.0735808082704	269	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTATTGCCATTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	149595949	149589417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
28812	chr17	+	2076	4	ISM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	41	1825	0	-181	intron_retention	FALSE	canonical	3	62	junction_3	819.767446698554	10	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGTGAGCCACCATGTGG	NA	False	NA	NA	False	NA	NA	NA	29251646	29260046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427
28813	chrX	-	1442	6	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGACAACATTAGAGTAAACA	NA	False	NA	NA	False	NA	NA	NA	20548878	20546418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
28814	chr5	+	4286	31	NIC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	3	1	intron_retention	FALSE	canonical	2	26	junction_17	30.3867844081381	1	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTATGACTTGAGATTGT	NA	False	NA	NA	False	NA	NA	NA	138278820	138310653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_138278883_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
28815	chr4	-	1613	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	770.766787037428	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAACTTCTTTTTGTGT	2	True	NA	NA	False	NA	NA	NA	41098180	41092728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41093883_41094290_41094385_41094700_41094839_41095144_41095272_41098001
28816	chr2	-	4487	8	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39403	-12127	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_4	38.7940664514141	46	46	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTACTTTTTATGACAGT	1573	False	NA	NA	False	NA	NA	NA	59881011	59795932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
28817	chr1	+	2681	7	ISM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	302	10	55	-10	intron_retention	FALSE	canonical	3	35	junction_4	147.536153761262	1	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATCTCAAGGAATCATTG	8273	False	NA	NA	False	NA	NA	NA	134333820	134339464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230
28818	chr2	+	2726	12	FSM	ENSMUSG00000039787.14	ENSMUST00000047521.7	2715	12	-11	0	-11	0	multi-exon	FALSE	canonical	2	9	junction_10	4.78288961380578	261	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACAGCTGAGCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	29759494	29772852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
28819	chr6	-	1514	9	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	66	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	384.245364318166	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCATTTTCTGACTAA	NA	False	NA	NA	False	NA	NA	NA	33037086	32769159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_32769862_32780824_32780961_32816478_32816560_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
28820	chr4	+	4356	11	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	26	junction_1	45.7947595255178	33	47	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTGTGGCAGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	115696416	115736443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115696439_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115732743_115733777_115733822_115735146
28821	chr9	-	3063	5	NIC	ENSMUSG00000032407.15	novel	3520	27	NA	NA	-11496	4996	intron_retention	FALSE	canonical	3	575	junction_4	90.7644616576334	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTCCCAAACACAGAAAC	NA	False	NA	NA	False	NA	NA	NA	95375793	95370164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_95371965_95372142_95372309_95373143_95373530_95374376_95374445_95375150
28822	chr13	-	3121	9	NNC	ENSMUSG00000035834.12	novel	3054	8	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	114.769061597627	345	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGATTTGCAGTGAACATT	NA	False	NA	NA	False	NA	NA	NA	81859128	81821959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81846433_81846503_81847862_81848013_81858976
28824	chr13	+	2445	10	NNC	ENSMUSG00000038080.18	novel	4987	21	NA	NA	18324	20564	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	437	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCACTCGGCCCGCCTCCC	9754	False	NA	NA	False	NA	NA	NA	47238257	47259319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_47239556_47239900_47239966_47241496_47241651_47241954_47242092_47251630_47251820_47252818_47252938_47253647_47253743_47255096_47255208_47255447_47255570_47259164
28825	chr3	+	2623	15	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-1	-335	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	515.48426310626	1	93	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTACTTGTTATGCCAA	4855	False	NA	NA	False	NA	NA	NA	34074252	34124136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100728_34101114_34101209_34101780_34101902_34103301_34103495_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
28826	chr4	+	3031	7	Antisense	novelGene_ENSMUSG00000040550.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	30	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGGAGATCCGCACCTC	NA	False	NA	NA	False	NA	NA	NA	14809509	14826398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_14811745_14812444_14812555_14815597_14815667_14818177_14818488_14822691_14822773_14825498_14825654_14826327
28827	chr7	-	2299	13	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-5	-13	intron_retention	FALSE	canonical	1	2	junction_9	164.23044446414	3	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTAATCAGACTCCTGA	NA	False	NA	NA	False	NA	NA	NA	125976588	125969251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973452_125974238_125974376_125975845_125975912_125976008_125976218_125976289
28828	chr18	+	3141	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	414	junction_3	24.7434839907399	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	67774662	67787232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_67774806_67777378_67777551_67779062_67781317_67781842_67782017_67786222_67786344_67786955
28829	chrM	+	1423	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	159	0	-159	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCGGAGCAATCCAGGTCG	-3	True	NA	22	True	NA	NA	NA	1093	2516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2500
28831	chr16	-	1654	8	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	5084	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACCGGCTTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	38411746	38384600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38384661_38393412_38393638_38396103_38396187_38402327_38402487_38405535_38405879_38406580_38406771_38408544_38408664_38411271
28832	chr3	+	2162	9	NIC	ENSMUSG00000028199.19	novel	2505	9	NA	NA	5	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	62.745019722684	693	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAAGCCCTTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	154302785	154328812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_154302922_154310528_154310753_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
28833	chr7	-	3027	10	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-20	-29	intron_retention	FALSE	canonical	0	0	junction_8	365.518133849525	5	70	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTATTGTAAGTCAAACCT	NA	False	NA	NA	False	NA	NA	NA	16761754	16738593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16739097_16739185_16740164_16740256_16740298_16740831_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756374_16756582_16761617
28834	chr17	-	2538	20	NNC	ENSMUSG00000052752.16	novel	2687	21	NA	NA	-39	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	141.286647980292	2	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTGAAATAAAAGCTGCACA	NA	False	NA	NA	False	NA	NA	NA	24738221	24727850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732353_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738087
28839	chr6	-	986	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	13	1190	-4	-1190	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	16	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGGAATGAAACTTAACAG	NA	False	NA	NA	False	NA	NA	NA	120893801	120871004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
28840	chr7	-	2342	21	ISM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	11472	46	8168	-46	3prime_fragment	FALSE	canonical	3	1254	junction_15	85.8092506668133	3	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGTAGCAGCTCTGGGAC	NA	False	NA	NA	False	NA	NA	NA	143142321	143111489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228
28841	chr2	+	1745	9	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	98.3552235521835	3	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	79	False	NA	NA	False	NA	NA	NA	13579120	13587637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584321_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
28842	chr14	-	1857	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	intron_retention	FALSE	canonical	0	0	junction_9	145.566101823192	12	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607998	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59599720_59600075_59607902
28844	chr14	+	2816	18	NNC	ENSMUSG00000022064.11	novel	2797	18	NA	NA	-17	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	30.945761234914	15	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACTGTAGAGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	99337325	99491930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350404_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
28845	chrX	+	876	5	Antisense	novelGene_ENSMUSG00000046873.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGCCTTCCAGCTCCAGC	NA	False	NA	NA	False	NA	NA	NA	156355387	156381635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_156355686_156355854_156355982_156359078_156359182_156374347_156374550_156381489
28846	chr9	-	2107	16	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	-1	-222	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	731.988233056607	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACGAGGATCACAGAAGTGA	NA	False	NA	NA	False	NA	NA	NA	36678906	36643943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646644_36646838_36652784_36652888_36653009_36653127_36654711_36654893_36655291_36655313_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
28849	chrX	+	1124	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	142	-56	142	56	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068951	13070075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13069000_13070100
28850	chr7	-	2060	6	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	960.197687978887	4	70	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACCCTTTTGTCTCACT	NA	False	NA	NA	False	NA	NA	NA	117728797	117718130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117719634_117720383_117720469_117721148_117721267_117725624_117725739_117726356_117726491_117728691
28852	chr2	-	2396	13	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	27	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	222.883548941794	2	83	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	103315443	103284346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290720_103293631_103293767_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
28853	chr5	-	2973	7	Antisense	novelGene_ENSMUSG00000029366.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	392	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACTCCCACCCTATACGCC	NA	False	NA	NA	False	NA	NA	NA	88931132	88912951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_88913204_88917460_88917577_88920486_88920687_88921944_88922087_88924713_88924830_88926218_88926310_88929076
28855	chr11	+	2698	11	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	126.309144562062	668	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCAGCCTCCGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	102139705	102156006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102139919_102141504_102141556_102145289_102145446_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
28856	chr9	+	3051	8	NNC	ENSMUSG00000111390.2	novel	3539	2	NA	NA	-1148	19831	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	65	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCCCACTGAGCAGAAG	8982	False	NA	NA	False	NA	NA	NA	27008698	27033470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_27009697_27010006_27010065_27010142_27010273_27011321_27012739_27013160_27013312_27016801_27016919_27017644_27017711_27033356
28857	chr6	+	2900	14	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	16	-3	intron_retention	FALSE	canonical	0	0	junction_6	219.390926654283	1	116	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTTGCTGTTGTGTTTTT	5453	False	NA	NA	False	NA	NA	NA	125108887	125121713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114190_125114281_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117843_125117998_125118122_125118236_125118466_125120963
28858	chr6	+	3524	11	NIC	ENSMUSG00000029863.14	novel	3529	11	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	35.1573605380154	99	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGCCTGGTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	42241981	42259442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246155_42246391_42250850_42250980_42253628_42253720_42256710_42256861_42257017_42257128_42257279
28859	chr5	+	2196	14	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	0	556	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	270.876180801199	27	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTGTGGTAAGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	31652095	31668759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652780_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
28860	chr6	-	3835	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	271	145	-3	10	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	1	189	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGTGTGAAAATTAA	10	True	NA	NA	False	NA	NA	NA	29609615	29540970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
28861	chr15	+	1708	12	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-33	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	531.025656568385	5	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959414	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78968430_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
28862	chr9	+	5031	7	Fusion	ENSMUSG00000070284.11_ENSMUSG00000032593.6	novel	1853	8	NA	NA	-4	-354	intron_retention	FALSE	canonical	0	0	junction_1	45.4777112685129	1	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTGCAACTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	107926483	107932546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_107926669_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928442_107928524
28863	chr15	+	2768	8	NIC	ENSMUSG00000022561.14	novel	2237	12	NA	NA	18	-5	intron_retention	FALSE	non_canonical	3	245	junction_1	18.7953533119878	12	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTACCTTGGGATCCTG	4850	False	NA	NA	False	NA	NA	NA	76215567	76219093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76216276_76216359_76216832_76216909_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
28865	chr5	-	2844	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	3	-398	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	221.750882933152	3	84	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACAGCCCCTGCTGGTT	1976	False	NA	NA	False	NA	NA	NA	138185464	138177287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178722_138178771_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
28866	chr17	+	2907	6	NNC	ENSMUSG00000039218.18	novel	8564	14	NA	NA	-109	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.8987663169668	4	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCAGTAATTGGTCTGTA	2843	False	NA	NA	False	NA	NA	NA	24038172	24043705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24040024_24040631_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
28867	chr9	-	1422	14	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-15	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	232.456167529462	2	44	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCCTGAAAGACACTGGC	NA	False	NA	NA	False	NA	NA	NA	108521314	108482169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494629_108497257_108497326_108521224
28868	chr9	-	1043	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6404.94330088097	561	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8134	False	NA	-46	True	NA	NA	NA	78387972	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386668_78387588_78387703_78387792
28869	chr6	-	2265	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	2	47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	255.993582508848	1	86	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAACTTTTGGGTTTTAGT	46	False	NA	NA	False	NA	NA	NA	30509701	30482366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492706_30494719_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
28871	chr1	+	1990	12	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	535.872687482841	154	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3182	False	NA	NA	False	NA	NA	NA	180396528	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415958_180428476
28872	chr15	+	2433	15	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	703.611949522039	1	99	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATCCATATCTATTAAT	NA	False	NA	NA	False	NA	NA	NA	81756684	81799315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788277_81790052_81790145_81791626_81791710_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
28874	chr3	-	3105	15	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	intron_retention	FALSE	canonical	1	25	junction_10	161.132345148518	2	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655867_95657650_95657730_95658012_95658943_95660318_95660443_95661630_95661828_95662069
28875	chr14	+	2265	2	NIC	ENSMUSG00000098255.2	novel	606	3	NA	NA	-36993	-20369	intron_retention	FALSE	non_canonical	0	0	junction_1	0	12	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAGGGGGAGGAAAACTT	NA	False	NA	NA	False	NA	NA	NA	69485061	69522435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_69487072_69522180
28878	chr2	+	2366	8	NNC	ENSMUSG00000026864.14	novel	2613	8	NA	NA	-3	-70	intron_retention	FALSE	non_canonical	0	0	junction_1	1278.9645844054	1	72	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTAATTTTTGTGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	34662103	34666473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662452_34662570_34662803_34663181_34663320_34663832_34663950_34664047_34664431_34664546_34664785_34665077_34665144_34665629
28879	chr1	+	1957	16	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	170.61163175144	1781	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAAGCTTTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	131080917	131101207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088255_131088298_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
28880	chr4	+	1969	17	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	13	134	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_13	233.977888578707	2	36	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTTTTATTCCTACTC	NA	False	NA	NA	False	NA	NA	NA	155954084	155973324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972339_155972504_155972567_155972640_155972784_155972852_155972983_155973076
28881	chr1	+	1420	10	Antisense	novelGene_ENSMUSG00000098288.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGCAACCTCAAGGCCAT	NA	False	NA	NA	False	NA	NA	NA	92367188	92401439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_92367632_92379734_92379841_92388100_92388184_92390008_92390070_92390801_92390880_92392082_92392203_92395100_92395192_92397586_92397805_92398542_92398707_92401383
28882	chr2	+	2502	13	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	23025	23485	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	25	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCCGCCCACAGAGTCA	NA	False	NA	NA	False	NA	NA	NA	5875970	5900191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5876829_5878549_5878629_5879035_5879229_5881173_5881372_5881650_5881809_5882494_5882822_5884405_5884512_5887389_5887502_5887628_5887760_5891308_5891389_5896100_5896169_5897965_5898035_5900068
28883	chr9	+	3363	22	FSM	ENSMUSG00000035919.17	ENSMUST00000039798.16	3382	22	17	2	1	-2	multi-exon	FALSE	canonical	3	30	junction_1	13.43515542748	72	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACTGGACTGAATTTAT	NA	False	NA	NA	False	NA	NA	NA	22387027	22799574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_22387352_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
28884	chr9	-	4082	24	NNC	ENSMUSG00000032480.18	novel	4441	23	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	240.011223745119	1	204	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	NA	False	NA	NA	NA	109946482	109913387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913933_109914017_109914122_109914212_109914371_109914479_109914640_109914761_109914941_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917772_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109945745_109945824_109946425
28885	chr17	-	3490	21	FSM	ENSMUSG00000001229.10	ENSMUST00000038794.6	3374	21	27	-143	27	133	multi-exon	FALSE	canonical	3	103	junction_20	12.6925174807837	152	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGCCGCAGTGAGGCTC	NA	False	NA	NA	False	NA	NA	NA	56525862	56493673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56494462_56495267_56495380_56496322_56496466_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408_56524462_56525740
28888	chr13	-	2811	6	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	2	-10	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	37.8386046254351	218	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGCTCAGCCTGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	21586863	21571182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586561
28889	chrX	-	2139	9	FSM	ENSMUSG00000016534.16	ENSMUST00000074913.12	2184	9	15	30	15	-30	multi-exon	FALSE	canonical	3	19	junction_1	322.044615503815	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACCTGATATTTCTACT	NA	False	NA	NA	False	NA	NA	NA	37545316	37490263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37491159_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
28891	chr10	+	3556	26	Antisense	novelGene_ENSMUSG00002076911.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	108	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGCAGGTTGGCAAGCC	NA	False	NA	NA	False	NA	NA	NA	121425525	121462221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_121426124_121429569_121429628_121432088_121432159_121435484_121435542_121436697_121436815_121437152_121437263_121438133_121438326_121438933_121439224_121440251_121440489_121441485_121441557_121442145_121442241_121442625_121442746_121442903_121443048_121443414_121443543_121445030_121445091_121445600_121445641_121447380_121447461_121447581_121447617_121449126_121449300_121449393_121449576_121450908_121451055_121452521_121452586_121453032_121453094_121454997_121455062_121458744_121458893_121462005
28892	chr2	+	3266	30	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	51	-100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	382.159325801772	1	173	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCTCAACATTTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	146854966	146919820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868354_146868434_146868542_146869246_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878585_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903452_146905152_146905281_146910711_146910776_146916804_146916947_146919402
28893	chr15	-	1979	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	349	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACCCTGCCAGCGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	83056444	83037698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038501_83038590_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
28894	chr2	-	2571	9	NIC	ENSMUSG00000039660.17	novel	2123	10	NA	NA	-2	5	intron_retention	FALSE	canonical	3	299	junction_4	45.1518272055517	59	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTATGCTCACGTGACTG	NA	False	NA	NA	False	NA	NA	NA	30068473	30063459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30064198_30064933_30065082_30065198_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067978_30068401
28895	chr12	-	2796	13	NNC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	9	-581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	128.599156511835	1	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCTTGAGAACATCCAAG	NA	False	NA	NA	False	NA	NA	NA	65219363	65180088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196317_65199476_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
28896	chrX	-	2089	7	FSM	ENSMUSG00000031387.15	ENSMUST00000135711.8	2125	7	36	0	11	0	multi-exon	FALSE	canonical	3	1962	junction_4	102.832252830628	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	72974387	72965728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72974124_72974319
28897	chr12	-	2634	9	NNC	ENSMUSG00000041645.15	novel	2850	9	NA	NA	1182	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	280.319878665427	1	73	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGACATCCTGAGGGTGT	698	False	NA	NA	False	NA	NA	NA	103390857	103374247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390390_103390558
28898	chr4	-	1689	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	729.869946558213	40	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093523_41093598_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
28899	chr5	+	1517	11	NIC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1492	-1	intron_retention	FALSE	canonical	3	1482	junction_9	145.331483168651	32	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGCTTCCAGATCTCT	NA	False	NA	NA	False	NA	NA	NA	21991772	22008784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008461_22008544
28900	chr5	-	776	6	Antisense	novelGene_ENSMUSG00000029614.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGCTTCGCCTTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	121347029	121343617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121343725_121343814_121343916_121344727_121344872_121345207_121345256_121346447_121346637_121346842
28902	chr16	-	3693	26	NIC	ENSMUSG00000039637.16	novel	4296	28	NA	NA	-9	493	intron_retention	FALSE	canonical	3	91	junction_8	8.97587878706035	3	70	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTGCTGCTCCAC	NA	False	NA	NA	False	NA	NA	NA	4497551	4444747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4445364_4445473_4445561_4446047_4446140_4446539_4446676_4446919_4447037_4448051_4448142_4448227_4448370_4449312_4449399_4449674_4449780_4449850_4449994_4450082_4450170_4450276_4450386_4451118_4451295_4451577_4451702_4452162_4452772_4452848_4452907_4453247_4453303_4472873_4472957_4473411_4473499_4479728_4479780_4486607_4486685_4487721_4487906_4488365_4488437_4493626_4493702_4494799_4494897_4497415
28903	chr13	-	2509	8	ISM	ENSMUSG00000021639.18	ENSMUST00000142182.8	1796	15	9485	-109	-1233	109	3prime_fragment	FALSE	canonical	3	302	junction_5	17.3240425126352	11	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTCTGTTATTTTG	NA	False	NA	NA	False	NA	NA	NA	100619390	100605206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719
28904	chr16	-	3195	18	NIC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	-25	-37	intron_retention	FALSE	canonical	3	368	junction_6	54.0927692178992	15	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACTATATGGTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	18630401	18599239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
28905	chr6	-	5138	12	Fusion	ENSMUSG00000030055.17_ENSMUSG00000030056.9	novel	5837	11	NA	NA	-16	0	intron_retention	FALSE	canonical	2	4	junction_2	120.094659634504	35	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGCTCAAGCATGGTC	NA	False	NA	NA	False	NA	NA	NA	87815754	87765846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_-_87769823_87771595_87771780_87796040_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87811409_87811476_87811924_87811977_87812709_87812733_87815625
28906	chr3	-	1995	13	NNC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	160	-5	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	254.560732766597	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATTGTTTTGGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	127346686	127330367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346640
28907	chr7	+	4472	3	NIC	ENSMUSG00000033961.17	novel	3705	5	NA	NA	-2	34	intron_retention	FALSE	canonical	3	27	junction_2	4.5	32	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGAAACCTGAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	12711772	12718301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12713907_12715772_12715855_12716045
28908	chr17	+	2366	14	ISM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	15083	1139	-5257	-86	3prime_fragment	FALSE	canonical	3	1341	junction_3	117.963739288742	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACTTTCTGCAATGTACT	NA	False	NA	NA	False	NA	NA	NA	71938292	71964887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
28909	chr18	+	6274	8	Antisense	novelGene_ENSMUSG00000024431.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	75	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGAGTCCATTGGCAAA	4279	False	NA	NA	False	NA	NA	NA	39543628	39620272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_39547686_39548746_39548914_39553633_39553759_39554458_39554603_39555538_39555819_39557437_39557552_39561668_39561834_39619050
28910	chr19	+	1294	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2992.1108037184	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	997	False	NA	NA	False	NA	NA	NA	8944558	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950352_8954679_8954855_8954948_8955074_8955307
28911	chr11	-	2312	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	2004.68731802632	1	113	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9654	False	NA	NA	False	NA	NA	NA	106679320	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675709_106675879_106675961_106676114_106676220_106676363_106676888_106676959_106677051_106677186_106677273_106677361_106677730_106677901_106679098
28912	chr11	-	3237	12	NNC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-111	-2	intron_retention	FALSE	canonical	2	5	junction_3	238.491228592799	2	87	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGGGCCACTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	6575570	6565600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6566715_6567307_6567423_6567517_6567624_6567956_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575444
28913	chr5	-	2475	4	NNC	ENSMUSG00000090963.3	novel	1776	4	NA	NA	-11584	599	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	6.94422221866655	288	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTCTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	110205936	110193405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110195551_110196887_110196949_110197131_110197259_110205794
28914	chr14	-	4341	17	NIC	ENSMUSG00000064128.9	novel	4756	18	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	37	junction_16	11.6039796513955	71	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTTTTACATTCTTTG	2391	False	NA	NA	False	NA	NA	NA	56809304	56764219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_56764569_56767144_56767266_56767346_56767432_56767506_56767648_56769692_56769807_56770032_56770098_56772212_56772298_56772807_56773051_56780221_56780388_56786880_56787014_56789379_56791007_56791116_56791220_56792546_56792659_56796029_56796294_56801409_56801534_56802125_56802625_56809194
28915	chr12	+	4142	19	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-13	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	177.506642198796	1	174	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGGAGATGCTTTCTT	4007	False	NA	NA	False	NA	NA	NA	83679051	83729848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695023_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718760_83719513_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
28916	chr4	-	2065	7	FSM	ENSMUSG00000028882.14	ENSMUST00000030702.14	2037	7	-28	0	-28	0	multi-exon	FALSE	canonical	3	165	junction_6	9.9121138007995	611	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	132570508	132554239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
28918	chr13	-	1353	10	ISM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	41	9155	0	-4114	5prime_fragment	FALSE	canonical	3	1480	junction_2	194.107326809133	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCGCCTCAGTGCATG	NA	False	NA	NA	False	NA	NA	NA	74498358	74479527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
28920	chr1	+	2074	17	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	254.14092424283	3	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	7809	False	NA	NA	False	NA	NA	NA	171927296	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942702_171949614
28921	chr9	+	3261	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	362	9	1	-9	multi-exon	FALSE	canonical	3	454	junction_8	39.8577188898467	309	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACCCTTGTTCTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	109705008	109722954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
28922	chr3	-	1896	12	NNC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	14	44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1194.02987351363	2	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTGGGTCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	108352500	108333883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335181_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338926_108340346_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
28923	chr4	-	2118	7	NNC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	-2	-19	intron_retention	FALSE	non_canonical	0	0	junction_5	433.408743438442	2	90	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTTATTTGAAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	148711213	148701201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706583_148709606_148709834_148711137
28924	chr4	+	3533	14	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	7	2	intron_retention	TRUE	non_canonical	0	0	junction_9	238.395102407896	2	122	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATGGGTTTGGAAACTA	9077	False	NA	NA	False	NA	NA	NA	152018154	152065677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152054426_152055313_152055388_152057936_152058303_152058653_152058771_152061406_152061563_152062457_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
28925	chr11	-	4417	13	FSM	ENSMUSG00000042506.16	ENSMUST00000041683.9	4434	13	17	0	-9	0	multi-exon	FALSE	canonical	3	276	junction_4	25.4114748795806	200	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGACTCTCTGCCTCATTA	NA	False	NA	NA	False	NA	NA	NA	61065864	61042610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61045340_61046005_61046156_61046593_61046657_61047996_61048089_61049117_61049245_61050030_61050190_61051397_61051504_61052139_61052288_61053652_61053823_61054551_61054654_61057496_61057611_61059085_61059219_61065540
28927	chr6	-	2088	12	ISM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	12513	-4	4359	4	3prime_fragment	FALSE	canonical	3	592	junction_11	55.3869931325439	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAGTATATCAATAATA	9034	False	NA	NA	False	NA	NA	NA	97170095	97160963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701
28930	chr4	-	1735	13	NNC	ENSMUSG00000028409.12	novel	2418	12	NA	NA	3	-576	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	365.993586768342	200	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAAGTGCTCATAAGGG	-24	True	NA	NA	False	NA	NA	NA	40757880	40737117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755736_40755799_40755838_40757776
28931	chr3	+	3877	23	FSM	ENSMUSG00000039234.12	ENSMUST00000047923.12	3903	23	21	5	-3	0	multi-exon	FALSE	canonical	3	54	junction_9	11.2449253935915	90	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTACTGTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	123061124	123159285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_123061186_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
28933	chr2	+	2674	12	NNC	ENSMUSG00000040282.14	novel	2735	11	NA	NA	-37	-179	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	116.799821691248	410	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTAAGTTACCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	115412159	115609070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115579557_115579622_115607382
28934	chr7	+	3868	14	NNC	ENSMUSG00000005686.18	novel	3489	15	NA	NA	-87	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	17.8782867214584	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACCCAATAGAACAAATGT	NA	False	NA	NA	False	NA	NA	NA	110367325	110411599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110367587_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404151_110407001_110407161_110409002_110409114_110409940
28936	chr13	+	3569	7	FSM	ENSMUSG00000021481.12	ENSMUST00000021937.12	3333	7	-2	-234	-2	234	multi-exon	FALSE	canonical	3	43	junction_4	9.82202739877171	133	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAATAGTCTGTCTTTG	17	False	NA	NA	False	NA	NA	NA	55253137	55282872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270142_55270329_55278346_55278441_55280119
28937	chrX	+	3736	5	FSM	ENSMUSG00000073176.5	ENSMUST00000101560.4	3738	5	-5	7	-5	-7	multi-exon	FALSE	canonical	3	23	junction_1	8.6421930087218	64	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATATGCTCTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	55391754	55411027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_55391800_55393642_55394089_55398822_55399028_55407826_55407941_55408101
28938	chr15	+	2430	14	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	0	43298	0	-11771	5prime_fragment	FALSE	canonical	3	36	junction_13	10.1817797586303	18	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCATACTTTAAAATAAAT	2907	False	NA	NA	False	NA	NA	NA	88867111	88896053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565
28939	chr11	+	1470	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-17	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654611_120654749
28940	chr6	-	2489	13	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	36	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	641.545724533074	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCTTCTGTGTTTGTGT	2966	False	NA	NA	False	NA	NA	NA	136805097	136790655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_136791210_136791316_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803103_136805017
28941	chr8	+	3151	12	NIC	ENSMUSG00000001909.17	novel	3647	15	NA	NA	322	-2	intron_retention	FALSE	canonical	3	466	junction_4	52.7982281195305	1	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85417339	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
28942	chr15	-	2490	12	NIC	ENSMUSG00000036606.18	novel	6497	38	NA	NA	31	1613	intron_retention	FALSE	canonical	0	0	junction_11	82.7618309437208	27	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCACTGCTTGTCTTAAG	9174	False	NA	NA	False	NA	NA	NA	89064960	89047480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89047574_89048214_89048317_89048415_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89055269_89055320_89064867
28943	chr8	-	1728	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1175.16355787401	91	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTCTGTGTCCTAGTGG	NA	False	NA	NA	False	NA	NA	NA	108315097	108307014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307952_108308237_108308386_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
28944	chr11	+	291	2	Intergenic	novelGene_2421	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATCCAGGCTTCACTCTT	NA	False	NA	NA	False	NA	NA	NA	80070980	80071445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_80071063_80071236
28945	chr19	-	1475	10	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	1	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1050.68564327664	66	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3764	False	NA	NA	False	NA	NA	NA	7017334	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998380_7003687_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
28946	chr11	+	1418	5	ISM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	2387	-838	2387	-36	3prime_fragment	FALSE	canonical	3	3141	junction_2	170.496884135752	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTAAAATAAAACTTGAATA	1727	False	NA	-41	True	NA	NA	NA	52267476	52280188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
28947	chr8	+	1858	14	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATGACTAGCGTAG	NA	False	NA	NA	False	NA	NA	NA	112720083	112737928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112720338_112721494_112721639_112723090_112723218_112724206_112724294_112724921_112725010_112725155_112725327_112725430_112725595_112726701_112726822_112728115_112728241_112728331_112728524_112729146_112729236_112729905_112730037_112732341_112732421_112737841
28948	chr1	-	2458	12	NNC	ENSMUSG00000026341.17	novel	2554	13	NA	NA	18	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1226.54565668543	2	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAATTACCCTTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	125363426	125320656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125321853_125324814_125324982_125325202_125325282_125331129_125331304_125333581_125333726_125335031_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363187_125363386
28949	chr3	-	1760	14	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	615	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	189.112908886972	1	30	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTAGTATGATATTTT	5612	False	NA	NA	False	NA	NA	NA	95756271	95737934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739868_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752362_95752466_95752544_95754686_95754910_95755087_95755161_95756226
28952	chr15	+	2151	6	NIC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	53	-895	intron_retention	FALSE	canonical	3	1189	junction_4	86.4560003701305	10	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACACTTCAGTCTGCTTT	685	False	NA	NA	False	NA	NA	NA	78915126	78921658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78920303_78920466_78920639_78920952
28953	chr15	-	3055	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	856	6	intron_retention	FALSE	non_canonical	0	0	junction_1	201.376099210739	1	84	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79815861	79800001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79801675_79801744_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79815662
28954	chr7	-	2667	16	NIC	ENSMUSG00000038520.16	novel	8750	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	189	junction_4	26.7966830451499	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCTGGCTGGCATCAGG	7883	False	NA	NA	False	NA	NA	NA	44498319	44490455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
28955	chr17	-	3066	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	-5	-1659	-5	1659	multi-exon	FALSE	canonical	3	69	junction_2	6.8414585839246	641	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCTTGTAATCTGGAAAT	NA	False	NA	NA	False	NA	NA	NA	3608061	3567871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
28956	chr17	+	2048	17	NIC	ENSMUSG00000055817.19	novel	2087	17	NA	NA	42	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_15	404.890412449776	114	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTTTATTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	84013661	84122334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478_84107566_84111879_84112027_84122064
28957	chr4	+	3128	10	ISM	ENSMUSG00000028542.18	ENSMUST00000149168.2	2834	15	21113	5896	902	4	internal_fragment	FALSE	canonical	2	62	junction_3	13.7472780695303	12	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTGCTGATGTGCTT	NA	False	NA	NA	False	NA	NA	NA	117713642	117726497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
28958	chr16	+	1819	2	Genic_Genomic	ENSMUSG00000085783.4	novel	1414	1	NA	NA	-82	368	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	62537317	62539181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_62538115_62538159
28960	chr15	-	4656	24	NNC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	40	-1	intron_retention	FALSE	non_canonical	0	0	junction_19	50.9870438341095	1	186	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTCAGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	76524089	76510439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521522_76522051_76522167_76522241_76523224_76523647_76523791_76523877_76523974_76524053
28961	chr7	+	3308	11	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	-10	-4	intron_retention	FALSE	canonical	0	0	junction_2	40.1777301499226	1	81	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTATGTGTTGCCGATC	NA	False	NA	NA	False	NA	NA	NA	101714707	101732965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_101715012_101719103_101719199_101720396_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728105_101728211_101728385_101729735_101729812_101730689_101730818_101731247
28962	chr18	+	3238	6	Antisense	novelGene_ENSMUSG00000024487.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	696	62	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCTTCCGGGGGCAC	3726	False	NA	NA	False	NA	NA	NA	40336963	40352405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_40339456_40340740_40340921_40343799_40343947_40345095_40345271_40351799_40351919_40352280
28963	chr11	-	2273	3	ISM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	2182	3871	802	2517	intron_retention	FALSE	canonical	3	937	junction_2	77.5	6	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGCCTTACATGGGCCC	6671	False	NA	NA	False	NA	NA	NA	6215590	6212789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_6214034_6214123_6214238_6214675
28964	chr19	-	3950	9	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35135	-42	intron_retention	FALSE	canonical	3	43	junction_4	11.6189500386223	28	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGTTCCAAGGTGATTAG	694	False	NA	NA	False	NA	NA	NA	44145746	44136118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44144116_44144279_44144505_44145490
28965	chr19	-	3124	2	NNC	ENSMUSG00000092274.4	novel	3004	2	NA	NA	0	2	intron_retention	FALSE	non_canonical	0	0	junction_1	0	84	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGAATTGTCATGGCT	10001	False	NA	NA	False	NA	NA	NA	5895506	5892332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5894134_5894183
28966	chr11	+	1024	2	Antisense	novelGene_ENSMUSG00002076664.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAGGGAACAGAGCTCAT	7	True	NA	NA	False	NA	NA	NA	120236515	120237642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120237362_120237464
28968	chr19	+	1629	7	Antisense	novelGene_ENSMUSG00000024640.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGCTGAGTCGGCGCTC	NA	False	NA	NA	False	NA	NA	NA	15882493	15902374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_15883514_15884291_15884432_15886664_15886730_15895650_15895776_15896818_15896891_15898300_15898358_15902224
28969	chr5	-	3186	10	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	19664	1	-967	-1	3prime_fragment	FALSE	canonical	3	636	junction_8	199.869834185362	1	92	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110938299	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077
28970	chr10	+	2699	18	NNC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	69.3656377142295	3	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9115	False	NA	NA	False	NA	NA	NA	41352331	41363026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355321_41355496_41355614_41355771_41356280_41356382_41357129_41357216_41360152_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
28971	chr6	-	2761	17	FSM	ENSMUSG00000000441.18	ENSMUST00000112949.8	2946	17	66	119	66	-91	multi-exon	FALSE	canonical	1	24	junction_16	182.118597605379	2	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTTAATGATTTTGGG	8881	False	NA	NA	False	NA	NA	NA	115652859	115595648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115652649
28972	chr8	-	1693	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-240	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	559.996972648067	8	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTGTCTCCTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	85573498	85568718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571070_85571202_85571278_85571499_85571595_85572490_85572695_85572878_85572981_85573336
28973	chr4	+	4619	18	Antisense	novelGene_ENSMUSG00000033365.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	36	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCTCATACCTTCTCCAC	NA	False	NA	NA	False	NA	NA	NA	117751706	117771473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_117751857_117751941_117752122_117752407_117752499_117752616_117752678_117752760_117752826_117754963_117755017_117757844_117757943_117758114_117758252_117758753_117758834_117760315_117760462_117760594_117760732_117760979_117761176_117761572_117761719_117761802_117761927_117762100_117762274_117762383_117762522_117762640_117762779_117768967
28974	chr2	-	3353	18	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-4855	-55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	50.8949661347237	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCATTCTCCTCCTGATG	NA	False	NA	NA	False	NA	NA	NA	71164039	71105088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71137364_71137451_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71159421_71160375_71163948
28975	chr11	-	2770	2	NNC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	4	-9	intron_retention	FALSE	non_canonical	0	0	junction_1	0	58	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTTTTGAGAATGTGTC	6007	False	NA	NA	False	NA	NA	NA	116743916	116740740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116743158_116743563
28976	chr9	-	1467	3	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2335.5	4	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775162	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771416_110774931
28978	chr13	+	1580	7	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTCCTGTGGATGAAAG	NA	False	NA	NA	False	NA	NA	NA	100915702	100922119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916296_100916530_100916639_100917278_100917423_100917663_100917903_100918132_100918291_100919971_100920153_100921962
28980	chr10	+	2223	5	Antisense	novelGene_ENSMUSG00000062931.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTATGGCGGACCGGAAG	NA	False	NA	NA	False	NA	NA	NA	82060683	82077112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_82062425_82063361_82063425_82063631_82063759_82072439_82072619_82076999
28982	chr5	+	2642	9	FSM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	21	27	-5	-22	multi-exon	FALSE	canonical	3	81	junction_3	33.6962535009458	233	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGGCTATTGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	130200659	130243156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_130200736_130216241_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
28983	chr17	+	1336	6	NNC	ENSMUSG00000046711.17	novel	1681	5	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2002.80826840714	40	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACAGTCTCTGGTGTAA	NA	False	NA	NA	False	NA	NA	NA	27775606	27782638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27781523_27781798
28984	chr1	+	2841	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	-11	438	-11	-438	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAACAAAAGTCTCAGA	849	False	NA	NA	False	NA	NA	NA	74545205	74569563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
28985	chr11	+	1901	1	Antisense	novelGene_ENSMUSG00000000120.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	77	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGAGGGGGGCGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	95459646	95461547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_95459600_95461500
28986	chr7	+	1384	7	NIC	ENSMUSG00000025503.6	novel	1229	8	NA	NA	-41	0	intron_retention	FALSE	canonical	3	3267	junction_3	171.765748105442	88	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3799	False	NA	NA	False	NA	NA	NA	140972070	140982881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140982243_140982656
28987	chr13	+	2480	11	FSM	ENSMUSG00000025451.16	ENSMUST00000109203.9	1525	11	-141	-814	-141	-13	multi-exon	FALSE	canonical	3	93	junction_1	94.7694043454954	634	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTTTTAAAATGGTATC	NA	False	NA	NA	False	NA	NA	NA	119564995	119594741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_119565177_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
28988	chr3	-	3397	8	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	5	1	intron_retention	FALSE	canonical	3	1645	junction_7	217.960677973934	11	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTAGTCCTTACGTTG	NA	False	NA	NA	False	NA	NA	NA	54642451	54636100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
28991	chr1	-	2930	18	NIC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	9	-5	combination_of_known_junctions	FALSE	canonical	3	17	junction_14	42.2765651215601	129	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCATTTTGCTTTTCCGT	NA	False	NA	NA	False	NA	NA	NA	151304197	151243454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151295850_151295935_151297784_151297872_151299257_151299357_151304047
28992	chr7	-	3172	9	FSM	ENSMUSG00000036427.6	ENSMUST00000135243.3	3195	9	49	-26	49	26	multi-exon	FALSE	canonical	3	1605	junction_5	199.218433823279	21	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTCAGTACTTTTATCT	NA	False	NA	NA	False	NA	NA	NA	33909753	33901557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674
28993	chr6	+	1701	11	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-32	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2493.67540991204	1	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5083	False	NA	NA	False	NA	NA	NA	85428968	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438101_85439074_85439180_85441764_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
28994	chr8	-	5213	1	NIC	ENSMUSG00000055707.14	novel	2919	3	NA	NA	20415	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGATGGAGCAGACCTGT	NA	False	NA	NA	False	NA	NA	NA	70908133	70902920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70902900_70908100
28995	chr17	-	2006	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	1	-597	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1085.12617033945	1	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGATTTTTGCGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	47093581	47085429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091471_47092708_47092818_47093544
28996	chr9	+	2188	12	Intergenic	novelGene_1039	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	3	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCAGGGGCGCACGCGCAA	NA	False	NA	NA	False	NA	NA	NA	53009934	53159398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010566_53028454_53028589_53124534_53124634_53134955_53135047_53136773_53136934_53140422_53140555_53145129_53145318_53146562_53146683_53147698_53147857_53149345_53149477_53151774_53151838_53159117
28997	chr4	+	2793	23	NNC	ENSMUSG00000028330.9	novel	3010	23	NA	NA	141	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	108.697738463629	2	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTTAAACTCTGGGAGT	0	True	NA	NA	False	NA	NA	NA	46138753	46172393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165311_46166770_46166841_46167301_46167396_46168505_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
28998	chr13	+	1860	5	NIC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	423	-3369	intron_retention	FALSE	canonical	3	1135	junction_4	157.942038419162	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTCCTCATCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	92491656	92522192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
28999	chr2	-	2508	11	NIC	ENSMUSG00000038312.11	novel	2290	11	NA	NA	53	-355	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	96.8371829412649	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTATCAGGTTTTACATGC	NA	False	NA	NA	False	NA	NA	NA	155571342	155543951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155554631_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
29000	chr8	+	1250	1	Antisense	novelGene_ENSMUSG00000052825.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTCATAGTAGGATCAAAAA	NA	False	NA	NA	False	NA	NA	NA	52648802	52650052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_52648800_52650100
29001	chr1	+	2908	6	NIC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	1	-113	intron_retention	FALSE	canonical	3	176	junction_5	20.3862698893152	3	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAATCCCTTCCCTCCTC	NA	False	NA	NA	False	NA	NA	NA	165957986	165993965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165992285_165992715
29002	chr15	+	2592	12	NNC	ENSMUSG00000022385.12	novel	2692	11	NA	NA	43	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	186.381950319656	2	75	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACATTTGGACGTGTAGA	7381	False	NA	NA	False	NA	NA	NA	85744189	85760770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759233_85759285_85759420_85759736_85759953_85760349
29003	chr2	+	2250	10	NIC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	-674	-3	intron_retention	FALSE	canonical	3	1543	junction_5	118.399616282328	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCAATAGTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	69692960	69701851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_69693660_69696533_69696638_69696831_69697007_69697615_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
29004	chr7	-	1953	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	49	882	2	-6	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	3	71	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCTGACCTGTATTTCA	NA	False	NA	NA	False	NA	NA	NA	33929712	33901636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
29005	chr8	+	3824	18	NNC	ENSMUSG00000041949.7	novel	4409	18	NA	NA	-15	-574	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	26.9555574255953	2	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCACCGAGCTGGTTG	1145	False	NA	NA	False	NA	NA	NA	107409731	107577497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107409888_107415283_107415925_107419198_107419337_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925_107473984_107508325_107508467_107533672_107533825_107545087_107545202_107576810
29006	chrX	-	2172	4	NNC	ENSMUSG00000046032.17	novel	2415	4	NA	NA	96	-7	at_least_one_novel_splicesite	FALSE	non_canonical	2	21	junction_3	208.269590248366	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCAAGCCTCCGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	100266059	100255571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100256360_100256403_100257471_100258006_100258132_100265867
29007	chr6	+	3236	14	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	124	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAGAATCAGTAAAAGGT	1094	False	NA	NA	False	NA	NA	NA	122295273	122313976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295601_122296271_122296506_122296854_122297007_122297170_122297283_122297896_122298012_122298829_122299045_122299283_122299431_122299965_122300777_122302418_122302908_122309478_122309607_122310245_122310400_122311028_122311112_122311933_122312042_122313815
29008	chr10	-	1945	18	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-14	-973	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	276.206757720336	6	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACCTGTCTAGAGCATGG	NA	False	NA	NA	False	NA	NA	NA	77845584	77823753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77823826_77825984_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
29009	chr6	+	1789	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-3	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2363.35432233353	2	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5145	False	NA	NA	False	NA	NA	NA	85429030	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436919_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442910_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
29011	chr7	+	4941	4	ISM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	272	8888	-4	5003	5prime_fragment	FALSE	canonical	3	285	junction_1	21.6692306175267	10	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAATATTGTCAACTTAA	NA	False	NA	NA	False	NA	NA	NA	12568959	12575616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015
29012	chr9	+	2237	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	-36	4	-36	2	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	733	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATCACAGTGCTCCAT	3738	False	NA	NA	False	NA	NA	NA	44238105	44245193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
29013	chr7	-	1920	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	77	11	13	-10	multi-exon	FALSE	canonical	3	790	junction_6	144.155948541848	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCACTGGACCCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	78798724	78783526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
29014	chr16	-	3361	6	NIC	ENSMUSG00000022822.17	novel	1136	7	NA	NA	0	-5	intron_retention	FALSE	canonical	2	5	junction_1	79.0554235963606	105	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTCCTGGTATTTAC	NA	False	NA	NA	False	NA	NA	NA	20245103	20219515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20219822_20221009_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
29015	chr11	+	3667	9	NIC	ENSMUSG00000020788.16	novel	4520	21	NA	NA	-6856	4542	intron_retention	FALSE	canonical	3	94	junction_4	10.6389614154766	2	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGCAACGCCCTCAACAG	NA	False	NA	NA	False	NA	NA	NA	72866066	72878913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72866477_72867963_72868053_72868170_72868274_72869041_72869174_72869505_72869632_72870952_72871172_72871264_72873653_72874285_72874372_72878799
29018	chr9	-	4664	21	Genic_Genomic	ENSMUSG00000111246.2	novel	2972	1	NA	NA	-91124	-2532	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGGGAGCAGCATAAAAG	NA	False	NA	NA	False	NA	NA	NA	31283412	31191848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_31191959_31224722_31224915_31227462_31227629_31229805_31229865_31236919_31237131_31238611_31238852_31240955_31241160_31246610_31246684_31248598_31248715_31251621_31251753_31252534_31252781_31258088_31258433_31260403_31260562_31264580_31264760_31265767_31265880_31268435_31268637_31270301_31270447_31271043_31271219_31272117_31272256_31273624_31273796_31282119
29019	chr12	+	2079	22	Antisense	novelGene_ENSMUSG00000037149.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	58	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCGCGGCGGCGCGCGCT	175	False	NA	NA	False	NA	NA	NA	13269307	13299175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_13269628_13270345_13270465_13270732_13270836_13273678_13273719_13273792_13273867_13273942_13273956_13279298_13279430_13280290_13280382_13281444_13281543_13284035_13284101_13285993_13286131_13287210_13287329_13287729_13287806_13289105_13289179_13289490_13289573_13290563_13290646_13290853_13290936_13292300_13292349_13293860_13293958_13295643_13295751_13296026_13296079_13299104
29020	chr6	-	1315	7	NIC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	-5	intron_retention	FALSE	canonical	3	5197	junction_3	428.359661966437	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTCGGGCTGATTGC	9997	False	NA	NA	False	NA	NA	NA	125471723	125437233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125437690_125438188_125438273_125439076_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
29021	chr2	+	2683	7	NIC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-12	-5	intron_retention	FALSE	canonical	3	229	junction_1	33.6039018898434	5	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTGTTTTGGTGTGTT	79	False	NA	NA	False	NA	NA	NA	13579120	13587631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_13579806_13580351_13580413_13583223_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423
29022	chr11	+	2943	10	NIC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-30	-12	intron_retention	FALSE	canonical	3	528	junction_1	58.9427426710044	3	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACTTTCTGAATAGTAT	4304	False	NA	NA	False	NA	NA	NA	102321313	102327621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324872_102324967_102325104_102325225_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
29023	chr11	-	3877	7	ISM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	-15	3387	-5	-3387	5prime_fragment	FALSE	canonical	3	649	junction_4	53.2741859523812	10	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAGTGTCTGTGATGTG	NA	False	NA	NA	False	NA	NA	NA	43638824	43624222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
29025	chr6	-	5349	14	ISM	ENSMUSG00000041372.11	ENSMUST00000212457.2	2958	20	70911	-3050	18995	2313	3prime_fragment	FALSE	canonical	3	34	junction_7	11.681675327689	80	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATTAATGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	120200609	120177720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_120180880_120183439_120183567_120184083_120184238_120185866_120185940_120186193_120186348_120187052_120187370_120191707_120192462_120193234_120193297_120193516_120193618_120194416_120194527_120195828_120195973_120199024_120199092_120199233_120199313_120200561
29026	chr14	-	1964	12	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5068	-5	intron_retention	FALSE	canonical	0	0	junction_10	174.535937240529	15	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACTGAAGTGTGCACCG	NA	False	NA	NA	False	NA	NA	NA	59607987	59586185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593476_59593600_59593765_59593900_59596924_59597033_59599182_59599305_59599720_59600075_59607902
29027	chr3	+	1565	12	NNC	ENSMUSG00000001415.11	novel	3119	12	NA	NA	3	54	intron_retention	FALSE	non_canonical	0	0	junction_11	111.051473434917	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTCTTGGTTTAAAAGT	NA	False	NA	NA	False	NA	NA	NA	88243569	88260090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256417_88256575_88256682_88256752_88257322_88257532_88258003_88258077_88259907
29030	chr7	+	1781	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	-102	0	-102	0	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	2831	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	126086430	126089899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
29031	chr4	+	1365	4	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	978.353832834636	40	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	3015	False	NA	NA	False	NA	NA	NA	128887162	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892926_128893062_128901826_128902023_128904355
29032	chr4	-	2480	12	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	309.559297514525	11	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTGTTTGTTGCTTGTG	6782	False	NA	NA	False	NA	NA	NA	126096445	126057872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126058044_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
29033	chr1	+	2555	17	NNC	ENSMUSG00000026288.15	novel	3942	23	NA	NA	-14006	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	180.302523554164	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAGTCAGGTGCCATGTG	2597	False	NA	NA	False	NA	NA	NA	87623056	87647418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627483_87628881_87628991_87630795_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
29034	chr11	-	1319	9	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6796.73371922131	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTGGATAGTGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	33113076	33102279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33110404_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
29035	chr1	+	3175	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	27	11	27	-11	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	1	114	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAGCAATTGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	180678718	180695667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
29036	chr4	-	2543	5	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	-18	-1	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	43.6369969177532	554	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTTGTTGGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	144135005	144118244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907_144130021_144134926
29038	chr2	+	1612	2	Genic_Genomic	ENSMUSG00000064193.9	novel	1302	1	NA	NA	-44	331	multi-exon	FALSE	canonical	0	0	junction_1	0	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTCTAAATTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	80667440	80669117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_80668349_80668413
29039	chr8	-	1674	18	NIC	ENSMUSG00000031878.19	novel	1735	19	NA	NA	-2	2	combination_of_known_splicesites	FALSE	canonical	2	5	junction_15	184.390082222839	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATATAGTCTTGTTGTCT	3360	False	NA	NA	False	NA	NA	NA	105261242	105237663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105256687_105256749_105257024_105257129_105261143
29040	chr6	+	2768	12	NIC	ENSMUSG00000033706.14	novel	2486	13	NA	NA	-1	-8	intron_retention	FALSE	canonical	3	411	junction_7	62.0754006986731	744	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCCTTTGCAACAATGCC	NA	False	NA	NA	False	NA	NA	NA	85408982	85423409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
29041	chr12	-	2629	7	NNC	ENSMUSG00000054302.16	novel	2658	7	NA	NA	0	356	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	149.586559853781	539	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGTTCATGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	54742628	54718083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_54718662_54719221_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
29042	chr11	+	2886	19	NNC	ENSMUSG00000017119.21	novel	4339	23	NA	NA	0	396	intron_retention	FALSE	non_canonical	0	0	junction_1	59.9992026695993	5	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTTATAAAAAATCTTT	987	False	NA	NA	False	NA	NA	NA	101443692	101466438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444815_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824
29043	chr11	-	2799	3	FSM	ENSMUSG00000020457.14	ENSMUST00000139430.2	608	3	-1322	-869	-1322	679	multi-exon	FALSE	canonical	3	1911	junction_1	72.5	12	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACACTGTGCTAAGCAGC	NA	False	NA	NA	False	NA	NA	NA	3204181	3199227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3200366_3202159_3202283_3202643
29045	chr18	+	2704	15	FSM	ENSMUSG00000024382.14	ENSMUST00000025241.7	2708	15	1	3	1	-3	multi-exon	FALSE	canonical	3	78	junction_6	14.4393524078881	298	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTTGTCTCTATTTTA	NA	False	NA	NA	False	NA	NA	NA	32373353	32403201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32373475_32373682_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378973_32379619_32379825_32381215_32381531_32387133_32387319_32390242_32390446_32394354_32394452_32397600_32397719_32398670_32398790_32400216_32400370_32402810
29046	chr1	-	3068	6	NNC	ENSMUSG00000026374.15	novel	7063	6	NA	NA	19	1136	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	401.095799030606	3	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCTGCTGTTTGAACTC	NA	False	NA	NA	False	NA	NA	NA	118238947	118226243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238790
29047	chr14	+	1845	10	NNC	ENSMUSG00000015971.6	novel	2119	13	NA	NA	1	3	intron_retention	FALSE	canonical	3	5	junction_5	98.5187830684279	2	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCCGTCTCTGTCAACAT	NA	False	NA	NA	False	NA	NA	NA	29700362	29712268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708906_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616
29049	chr4	-	2854	18	NNC	ENSMUSG00000091985.2	novel	3039	2	NA	NA	3321	8078	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10	19	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTCCTGGGGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	108491317	108482961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108483016_108483179_108483349_108483495_108483573_108483675_108483786_108483868_108484000_108484242_108484317_108484490_108485143_108485222_108485398_108485777_108485905_108486769_108486829_108486912_108487024_108487281_108487362_108487472_108487533_108487739_108487790_108488789_108488892_108489030_108489121_108490365_108490498_108490716
29050	chr11	-	2012	25	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	11	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	128.113312475064	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTCTATGAAATGAGTG	NA	False	NA	NA	False	NA	NA	NA	54924260	54869947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870019_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
29051	chr8	-	2988	3	Antisense	novelGene_ENSMUSG00000003039.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTCCTGTTTGCATACA	NA	False	NA	NA	False	NA	NA	NA	72976865	72973597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_72973704_72973783_72975824_72976023
29052	chr2	-	3143	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	720.585641451914	5	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	NA	False	NA	NA	NA	90735059	90724979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_90725222_90728727_90728848_90728980_90729932_90731322_90732857_90733190_90733289_90734766_90734833_90734927
29054	chr18	-	1275	3	ISM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	17444	3014	520	-2	3prime_fragment	FALSE	canonical	3	853	junction_1	38.5	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTAAGTCTTCGTCATT	NA	False	NA	NA	False	NA	NA	NA	63808064	63797178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_63797404_63804652_63804758_63807119
29055	chr7	-	1889	17	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.242061459137964	1	43	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGCGGTTGAGGCTGAG	9276	False	NA	NA	False	NA	NA	NA	13045348	13029409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
29056	chr13	-	2399	7	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	0	385	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.030385968227	1	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCATGTGTCTAGGCATG	6808	False	NA	NA	False	NA	NA	NA	62860567	62846834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62847862_62848029_62848455_62848538_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
29057	chr5	-	2570	7	NIC	ENSMUSG00000029328.16	novel	1477	8	NA	NA	-15	9	intron_retention	FALSE	canonical	3	110	junction_6	363.263181300953	1	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTACTGCATAGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100186769	100182570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
29058	chr8	+	2171	14	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	49	-376	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	142.428721922239	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGCTGTTGCCAGAAACC	2442	False	NA	NA	False	NA	NA	NA	70495747	70524621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70495882_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
29059	chr4	-	2584	15	NNC	ENSMUSG00000028603.16	novel	2640	16	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	201.518685516368	6	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTTGGCTTTTACTGT	NA	False	NA	NA	False	NA	NA	NA	107975729	107901037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944211_107944360_107948433_107948511_107955195_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
29060	chr6	-	996	6	Antisense	novelGene_ENSMUSG00000023505.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	13.6	657	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGCTAGAGAAATAACTCC	9203	False	NA	NA	False	NA	NA	NA	124810241	124807207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_124807235_124807463_124807612_124808322_124808447_124809103_124809398_124809523_124809631_124809945
29061	chr4	+	2118	19	NNC	ENSMUSG00000017264.17	novel	2682	24	NA	NA	-6	-641	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	217.450923936845	1	65	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCCAGAACATAATGCAGT	NA	False	NA	NA	False	NA	NA	NA	148642905	148660318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649856_148650746_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148658198_148658266_148660265
29063	chrX	-	2219	4	NNC	ENSMUSG00000046032.17	novel	2415	4	NA	NA	96	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	211.978510441245	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	NA	False	NA	NA	NA	100266059	100255564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100257371_100258006_100258132_100259088_100259185_100265867
29064	chr1	+	2712	13	FSM	ENSMUSG00000026199.18	ENSMUST00000145459.9	2770	13	58	0	26	0	multi-exon	FALSE	canonical	0	0	junction_4	34.990077958695	3	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	102	False	NA	NA	False	NA	NA	NA	75168861	75176031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172212_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
29065	chr2	+	2617	2	NNC	ENSMUSG00000045822.5	novel	2708	2	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCACGTTTGTGTTTTT	3066	False	NA	NA	False	NA	NA	NA	164647020	164664043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164647271_164661676
29066	chr2	+	2919	11	FSM	ENSMUSG00000027180.13	ENSMUST00000028603.10	4740	11	78	1743	-45	-1506	multi-exon	FALSE	canonical	3	178	junction_10	68.8773547691838	333	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCACCATGGCTACTGCTT	NA	False	NA	NA	False	NA	NA	NA	103858143	103891842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
29067	chr14	-	1887	7	FSM	ENSMUSG00000021273.12	ENSMUST00000238526.2	3048	7	-93	1254	-93	-1251	multi-exon	FALSE	canonical	3	727	junction_5	64.1242283904194	43	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTCCTTGTCTTTCTCA	2789	False	NA	NA	False	NA	NA	NA	63402467	63383852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980
29068	chr2	-	3234	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	107	-260	-31	260	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	739	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGATTGTCATAGTGCAG	9659	False	NA	NA	False	NA	NA	NA	35091025	35069956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
29069	chr9	-	2130	16	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	3	212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	89.8121496359052	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGTGTTTGTGGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	61854039	61831913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844534_61851484_61851603_61852622_61852702_61853893
29070	chr5	-	2012	12	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-8	0	intron_retention	FALSE	canonical	3	174	junction_11	68.0427672998254	1222	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794492	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
29071	chr12	+	2205	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	136	1984	136	1693	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTGTCTTTCCCTCCT	NA	False	NA	NA	False	NA	NA	NA	33479769	33489407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
29072	chr9	+	2354	9	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	766	junction_7	71.4405347124446	10	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	NA	False	NA	NA	NA	20799572	20803474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799874_20800633_20800736_20800929_20800981_20801066_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
29074	chr10	-	1454	8	ISM	ENSMUSG00000019795.18	ENSMUST00000161123.8	2607	9	-24	8256	15	101	5prime_fragment	FALSE	canonical	3	19	junction_5	318.236531208971	867	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTCAGAATCCCAGAGAG	NA	False	NA	NA	False	NA	NA	NA	7539052	7513392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524425_7524814_7524920_7538838
29075	chr10	-	2433	2	Intergenic	novelGene_3387	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACTAACAGAGGAAGACAG	NA	False	NA	NA	False	NA	NA	NA	7512994	7507801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_7509481_7512240
29078	chr3	+	2798	12	NIC	ENSMUSG00000028164.16	novel	3675	17	NA	NA	1595	-64	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	59.9670708537349	9	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAACTTGAAAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	135230290	135277101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135269439_135269559_135272248_135272392_135273224_135273483_135275975
29079	chr5	-	2255	5	NNC	ENSMUSG00000072762.10	novel	2001	4	NA	NA	-112	475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.5170915203413	10	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	7834	False	NA	NA	False	NA	NA	NA	109899575	109883380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109883767_109884099_109885666_109886815_109886877_109887064_109887192_109899460
29080	chr6	+	2429	5	NIC	ENSMUSG00000068328.11	novel	1826	10	NA	NA	4	-3	intron_retention	FALSE	canonical	3	1074	junction_1	57.6389625166866	2	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTCAAGGTCTCTGTTG	5451	False	NA	NA	False	NA	NA	NA	83031739	83034654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83032030_83032109_83032672_83032878_83032952_83033047_83034376_83034478
29082	chr4	+	1049	5	FSM	ENSMUSG00000028478.19	ENSMUST00000170241.8	1079	5	27	3	-8	-3	multi-exon	FALSE	canonical	3	1242	junction_1	75.1631558677521	3767	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATACATGAAGCATCTTT	-8	True	NA	NA	False	NA	NA	NA	44012669	44032842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44032400
29083	chr8	-	3795	24	FSM	ENSMUSG00000017765.18	ENSMUST00000116429.9	3755	24	-43	3	10	0	multi-exon	FALSE	canonical	3	126	junction_15	19.3746272602721	93	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTGCTCCGGCTC	NA	False	NA	NA	False	NA	NA	NA	106692719	106670224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672363_106672476_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106674584_106675769_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692556
29084	SIRV7	+	1657	1	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCGCAATACTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	1006	2663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_1000_2700
29085	chr11	+	1562	10	NNC	ENSMUSG00000017421.19	novel	2152	9	NA	NA	0	-103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	364.303834663619	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	NA	False	NA	NA	NA	80274156	80286968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80283984_80286432
29086	chr7	+	3336	11	NNC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	61	546	intron_retention	FALSE	canonical	3	3	junction_6	95.9640036680421	8	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGCATAGCCTCTGGCT	6941	False	NA	NA	False	NA	NA	NA	140711329	140736061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732645_140732802_140732887_140734381_140734469_140734616_140734723_140734910_140735246
29087	chr11	-	1919	11	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	65	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	790.886268688488	2	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5266	False	NA	NA	False	NA	NA	NA	88846226	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88826550_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
29088	chr2	-	2328	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	33	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.441219410632	32	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGAGCTTTATAGGAATC	NA	False	NA	NA	False	NA	NA	NA	165700060	165669066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165699974
29089	chr19	-	2098	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	67	452	-62	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1	92	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902356	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
29090	chr17	-	4983	7	FSM	ENSMUSG00000062078.16	ENSMUST00000233828.2	5428	7	448	-3	448	3	multi-exon	FALSE	canonical	3	312	junction_1	334.742396810177	152	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAACTTTGTTTGGCCC	NA	False	NA	NA	False	NA	NA	NA	10537842	10429114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_10433124_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
29091	chr6	-	3073	15	FSM	ENSMUSG00000005069.13	ENSMUST00000080557.12	3073	15	-18	18	-18	-3	multi-exon	FALSE	canonical	3	93	junction_8	13.6099078555564	272	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGACTGACGTGGGTA	NA	False	NA	NA	False	NA	NA	NA	124392044	124373793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
29092	chr19	-	2231	2	ISM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	-9	2699	-9	1327	5prime_fragment	FALSE	canonical	3	278	junction_1	0	3	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGGAGAGCTGGTACTA	NA	False	NA	NA	False	NA	NA	NA	10926639	10921543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_10922777_10925641
29094	chr16	+	2012	9	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	240.628733737266	18	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTGTGGCTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	48104158	48114598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48108984_48109070_48109401_48109569_48109690_48109742_48109964_48110476_48111376_48111678_48113273_48113470_48114061
29095	chr19	+	3006	21	NNC	ENSMUSG00000025001.12	novel	5868	22	NA	NA	-34	-2774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	558.266018578957	1	109	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGGTCACATTATTTT	NA	False	NA	NA	False	NA	NA	NA	38919439	38956721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38929012_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943355_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
29096	chr13	-	3431	13	NNC	ENSMUSG00000025450.5	novel	2659	2	NA	NA	-9344	11037	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	78	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAGCGAAGCCGGAAGT	NA	False	NA	NA	False	NA	NA	NA	119622641	119599302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119599654_119601098_119601225_119601813_119602841_119603402_119603490_119606048_119606696_119608672_119608774_119610363_119610493_119611366_119611457_119612468_119612542_119614218_119614391_119615963_119616057_119617468_119617607_119622244
29097	chr1	+	2529	21	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	275.038592746545	1	113	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAAATATTAAAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	45834657	45862772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844540_45844608_45845836_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853890_45855714_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859298_45859351_45861607_45861751_45862042_45862135_45862467
29098	chr14	+	2045	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	1	101	1	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATACTGAATATCGAT	NA	False	NA	NA	False	NA	NA	NA	113552040	113554085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_113552000_113554100
29102	chr7	+	2527	9	NIC	ENSMUSG00000058454.16	novel	2752	9	NA	NA	-16	-4	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	171.596137412822	696	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTATGTTGTACTGT	NA	False	NA	NA	False	NA	NA	NA	143383954	143402142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_143384003_143387504_143387674_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
29103	chr10	+	2085	5	ISM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	2253	4	-999	-4	3prime_fragment	FALSE	canonical	3	1165	junction_2	57.0328852505289	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCCAATGTTGGCTTGC	NA	False	NA	NA	False	NA	NA	NA	7545519	7554641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
29104	chr8	-	3299	23	NIC	ENSMUSG00000037300.20	novel	3301	23	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_17	103.32721034023	223	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	NA	False	NA	NA	NA	125448711	125398070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
29105	chr14	+	2805	18	FSM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	-7	-1	-7	1	multi-exon	FALSE	canonical	2	66	junction_8	18.7005171736119	185	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACTGTAGAGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	99337335	99491930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
29106	chr1	+	3765	24	NNC	ENSMUSG00000026213.16	novel	4458	25	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	14.9869508457249	1	29	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCATTGCTGACTCTGG	2777	False	NA	NA	False	NA	NA	NA	75498209	75513572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75498287_75498407_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75505718_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
29108	chr17	-	2149	14	NIC	ENSMUSG00000023942.16	novel	2033	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	645.50828557468	1	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45910544	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
29109	chrX	-	3905	9	FSM	ENSMUSG00000031166.14	ENSMUST00000033506.13	4183	9	272	6	-25	-4	multi-exon	FALSE	canonical	3	18	junction_8	7.92839044194974	71	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGACTTGGGCCTCTCTT	7193	False	NA	NA	False	NA	NA	NA	7998775	7989545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
29110	chr10	+	1762	6	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	-824	-2	intron_retention	FALSE	canonical	0	0	junction_1	661.842458595699	2	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	2151	False	NA	NA	False	NA	NA	NA	79696747	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79696804_79697849_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
29111	chr11	+	3436	7	NNC	ENSMUSG00000038366.16	novel	758	3	NA	NA	26	-18	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	223.899344944702	1	113	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTTTTACCTGCGGAC	NA	False	NA	NA	False	NA	NA	NA	97697161	97729572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97697374_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
29112	chr17	-	1936	6	NIC	ENSMUSG00000024436.17	novel	1079	7	NA	NA	-2	3	intron_retention	FALSE	canonical	3	1264	junction_3	62.8477525453377	31	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTTGACTCCCTTTGGG	4294	False	NA	NA	False	NA	NA	NA	36227283	36221274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36221849_36222310_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
29113	chr1	+	3467	8	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	9	-338	intron_retention	FALSE	canonical	3	62	junction_1	23.1499107416625	18	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTCTAAGGTTTGAG	NA	False	NA	NA	False	NA	NA	NA	173248172	173293260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173248253_173255324_173255465_173280393_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
29114	chr2	-	5055	31	NIC	ENSMUSG00000015647.10	novel	11388	79	NA	NA	-7068	-5	intron_retention	FALSE	canonical	2	111	junction_28	64.7231797735556	229	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACTTGAGTGTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	179828504	179818170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150_179824262_179824559_179824663_179824756_179824899_179825112_179825268_179825410_179825528_179825810_179826008_179826193_179826365_179827121_179827234_179827415_179827527_179827606_179827759_179828354
29115	chr13	-	1947	5	NNC	ENSMUSG00000074865.12	novel	1714	5	NA	NA	10	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	63.4798196279731	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAACTTTGGGTGCATAT	NA	False	NA	NA	False	NA	NA	NA	62719003	62634467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62635805_62640180_62640241_62668231_62668359_62713757_62714052_62718874
29117	chr10	-	3752	21	FSM	ENSMUSG00000020329.13	ENSMUST00000020580.13	3755	21	6	-3	0	0	multi-exon	TRUE	canonical	3	126	junction_16	17.3118456555042	88	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGACGCTGCGCTCGGCGC	4715	False	NA	NA	False	NA	NA	NA	79582407	79571960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
29119	chr18	+	4765	6	FSM	ENSMUSG00000042439.14	ENSMUST00000049016.12	5503	6	223	515	71	-5	multi-exon	FALSE	canonical	1	1	junction_1	37.5520971451662	2	163	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGCCCTTGAGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	65713523	65821999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_65713582_65715967_65716078_65756054_65758406_65815965_65816079_65818595_65818762_65820032
29120	chr11	+	1863	8	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	-52	-818	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1018.48226417988	3452	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATAAACTGTGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	97206681	97219928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97215166_97216534_97216584_97217607_97217758_97218911_97219086_97219307
29121	chr11	+	3870	23	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	-31	0	intron_retention	FALSE	canonical	2	2	junction_14	35.6624730419958	548	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	NA	False	NA	NA	NA	96941614	96959730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950608_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
29122	chr5	+	2174	15	NIC	ENSMUSG00000029146.15	novel	2019	16	NA	NA	-19	1	intron_retention	FALSE	canonical	2	10	junction_3	137.516678023772	12	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTACCTTTGGTTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	31350618	31356239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31350810_31351212_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
29123	chr4	+	3177	10	NNC	ENSMUSG00000028696.13	novel	2118	9	NA	NA	59	2571	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	25.820367116381	155	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTCCAAAATGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	116364807	116398011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996_116396326_116397783
29127	chr11	-	3033	2	Antisense	novelGene_ENSMUSG00000036860.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCGCGGTGATGACGCCA	NA	False	NA	NA	False	NA	NA	NA	59097254	59093330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_59095583_59096473
29128	chr11	-	5352	5	FSM	ENSMUSG00000044807.14	ENSMUST00000109135.9	5325	5	-18	-9	16	9	multi-exon	FALSE	canonical	3	17	junction_4	5.87367006223537	46	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGAATGTGAGCTTTTT	312	False	NA	NA	False	NA	NA	NA	50718535	50701903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718405
29129	chr2	+	1797	9	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	97.4531137265506	236	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	80	False	NA	NA	False	NA	NA	NA	13579121	13587636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585482_13586446_13586510_13587283
29130	chr7	-	2622	1	FSM	ENSMUSG00000064741.3	ENSMUST00000082807.3	87	1	-876	-1659	-876	1659	mono-exon	FALSE	NA	NA	NA	NA	NA	4	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	115933368	115930746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_115930700_115933400
29131	chr11	-	1892	14	Antisense	novelGene_ENSMUSG00000007739.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	84	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCGACGCCGGGAGAGAA	7748	False	NA	NA	False	NA	NA	NA	22953337	22940646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22940877_22943264_22943317_22944295_22944392_22945943_22946037_22946314_22946452_22947029_22947154_22947601_22947736_22949032_22949175_22950857_22950953_22951359_22951468_22951554_22951694_22952167_22952379_22952793_22952932_22953144
29132	chr7	+	2225	16	Antisense	novelGene_ENSMUSG00000078762.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATGACGTCAGGAGCGC	NA	False	NA	NA	False	NA	NA	NA	30353167	30364413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30353484_30353597_30353728_30356373_30356503_30356585_30356698_30357022_30357343_30357926_30358090_30358276_30358415_30358491_30358554_30358715_30358839_30358964_30359025_30359520_30359601_30359682_30359753_30361052_30361216_30361294_30361420_30362634_30362710_30364254
29133	chr5	+	1839	13	ISM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	11562	7	-58	-7	3prime_fragment	FALSE	canonical	3	70	junction_7	11.6404467268228	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGCTGTGCTTTGTG	9759	False	NA	NA	False	NA	NA	NA	137797621	137820876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
29134	chr15	-	2970	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	779	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	170.470916385562	10	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	NA	False	NA	NA	NA	79815938	79800007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79815662
29135	chr6	+	3614	10	ISM	ENSMUSG00000029863.14	ENSMUST00000031895.13	3529	11	63	4	-8	-4	intron_retention	FALSE	canonical	3	71	junction_8	18.6309181499762	11	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTGTGCCTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	42241981	42259438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42256710_42256861_42257017
29136	chr1	-	4078	21	NNC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	126	0	intron_retention	FALSE	canonical	3	31	junction_2	38.8651514856176	3	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	NA	False	NA	NA	False	NA	NA	NA	183126831	183107681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_183108509_183109058_183109201_183110440_183110513_183110600_183110675_183110777_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
29137	chr5	+	2282	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	-11	5	6	-5	multi-exon	FALSE	canonical	3	120	junction_1	48.9833895211386	644	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9188	False	NA	NA	False	NA	NA	NA	110987854	111022006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
29138	chr9	+	3461	20	NIC	ENSMUSG00000033335.18	novel	3502	21	NA	NA	-2	-6	combination_of_known_junctions	FALSE	canonical	2	224	junction_13	132.11218266634	3	76	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGGCTACGTGTGTGGG	5900	False	NA	NA	False	NA	NA	NA	21336261	21418428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
29139	chr15	+	1039	8	Antisense	novelGene_ENSMUSG00002075255.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGACTTCTTTCTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	79962010	79965961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79962092_79962179_79962308_79962531_79962633_79962910_79963010_79963890_79964051_79964565_79964754_79965096_79965232_79965814
29140	chr15	+	1653	14	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-30	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	488.932407811432	17	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959417	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78973719_78973963_78974162_78977536_78977618_78978400
29141	chr16	+	4552	12	ISM	ENSMUSG00000039473.9	ENSMUST00000052449.6	6455	19	14645	0	307	0	3prime_fragment	FALSE	canonical	3	47	junction_11	11.336330830309	77	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTTTCCTCATTTT	1884	False	NA	NA	False	NA	NA	NA	4882576	4904149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_4882651_4888512_4888584_4889917_4890048_4890170_4890290_4890872_4891002_4891185_4891333_4892185_4892237_4892333_4892377_4894755_4895980_4899281_4899526_4899757_4899848_4901919
29142	chr2	-	1821	9	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	143.4797459574	33	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCGTTTCTAAGGGGT	NA	False	NA	NA	False	NA	NA	NA	73044756	72923144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72924069_72927488_72927548_72972258_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
29143	chr9	-	2867	13	NNC	ENSMUSG00000039542.17	novel	2525	14	NA	NA	-1354	-5	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	44.198651940227	80	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCAGAACGGTGACGAAAT	9144	False	NA	NA	False	NA	NA	NA	49481203	49442580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_49443699_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125
29144	chr9	+	1624	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1714.41749704285	38	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108765753	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778087_108778482
29146	chr2	+	2930	13	NNC	ENSMUSG00000033411.17	novel	5053	13	NA	NA	8	-344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	151.154147772692	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGTGGACAATTGATAA	NA	False	NA	NA	False	NA	NA	NA	121786974	121842525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121787099_121799550_121799761_121807811_121807951_121809369_121809523_121811632_121811846_121817429_121817509_121819305_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
29148	chr3	-	2137	18	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	152.706267560468	2	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662144	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647446_95648673_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
29149	chr13	-	3569	5	NNC	ENSMUSG00000048280.19	novel	683	5	NA	NA	-5	3827	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	7.0178344238091	20	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGTTATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	67831591	67815558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67817991_67818912_67819731_67821116_67821213_67821680_67821808_67831495
29150	chr5	-	3209	12	NIC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	-8	172	intron_retention	FALSE	canonical	3	476	junction_9	96.282813447101	27	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	121731653	121705768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_121706087_121706988_121707104_121708666_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
29151	SIRV6003	+	2863	2	Genic_Genomic	SIRV6003A	novel	6000	1	NA	NA	2985	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	2985	6000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV6003_+_4360_4511
29152	chr1	+	3390	9	FSM	ENSMUSG00000043015.16	ENSMUST00000165859.8	3396	9	-9	15	-9	-15	multi-exon	FALSE	canonical	3	30	junction_5	7.49061913328932	93	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTGAAATGTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	52669852	52691063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682280_52682396_52684419_52684646_52687908_52688086_52688864
29153	chr16	-	1819	17	FSM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	-10	0	-10	0	multi-exon	FALSE	canonical	3	428	junction_7	56.9566378374812	631	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	NA	False	NA	NA	NA	35311253	35217681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
29154	chr5	+	4687	29	FSM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-70	719	-31	-719	multi-exon	FALSE	canonical	2	47	junction_16	11.5130804048336	74	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAGTAAAAATTAAGTCAAT	1073	False	NA	NA	False	NA	NA	NA	108280709	108380775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779_108286939_108288724_108288832_108296776_108296906_108303624_108303722_108306390_108306513_108309332_108309625_108311513_108311639_108315874_108316030_108319478_108319700_108321616_108321728_108322731_108322864_108328263_108328399_108328679_108328758_108336797_108336915_108339748_108339917_108341566_108341710_108343861_108344026_108345622_108345837_108349190_108349291_108349930_108350048_108354460_108354605_108359959_108360164_108363852_108363991_108368563_108368765_108376445_108376914_108380599
29155	chr14	-	2826	12	ISM	ENSMUSG00000004558.16	ENSMUST00000004673.15	2099	16	1921	10	480	2	intron_retention	TRUE	canonical	3	127	junction_6	9.90366824101551	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTGTTAATCCGGGTC	NA	False	NA	NA	False	NA	NA	NA	52148966	52142737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771
29156	chr15	+	1263	1	NIC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	6	-3233	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAGGCAGGTATATTTCT	NA	False	NA	NA	False	NA	NA	NA	103148886	103150149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_103148900_103150100
29158	chr1	+	2748	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	1	0	1	0	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	276	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	NA	False	NA	NA	NA	151304293	151333912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
29159	chr14	-	1978	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-8	-1120	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	1816.792877401	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATCTCTTATGCTTTC	NA	False	NA	NA	False	NA	NA	NA	36857219	36843900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848680_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
29160	chrX	+	1648	3	NIC	ENSMUSG00000008682.14	novel	648	7	NA	NA	0	-6	intron_retention	FALSE	canonical	3	9221	junction_1	276.5	189	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTATGTTTTTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	73314462	73316735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73315514_73315784_73315924_73316277
29161	chr16	+	1991	9	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGGTCCCACCCACTCC	5601	False	NA	NA	False	NA	NA	NA	22064612	22084706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065605_22065950_22066016_22067187_22067233_22067798_22067886_22069615_22069730_22071355_22071534_22073156_22073320_22073733_22073864_22084489
29162	chr15	+	4336	14	NNC	ENSMUSG00000042303.20	novel	2997	22	NA	NA	1412	178444	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	60	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGAAGCTGCGGGCCCTCC	NA	False	NA	5	True	NA	NA	NA	80896489	81074935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80898004_80899549_80899613_80899961_80900113_80900431_80901426_80902149_80902320_80902413_80902681_80904365_80904514_80904951_80905130_80906597_80906760_80907742_80907821_80910863_80910919_80929489_80929556_81001591_81001852_81074705
29163	chr2	+	3319	14	Intergenic	novelGene_2719	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAGTCTGAGTTCACAT	NA	False	NA	NA	False	NA	NA	NA	139961807	140012451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_139962813_139965446_139965592_139966847_139966919_139971119_139971207_139980851_139980973_139990670_139990830_139996711_139996851_139998971_139999090_140000399_140000552_140001610_140001717_140002310_140002417_140006128_140006500_140009691_140010376_140012396
29165	chr12	-	1934	15	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	1410	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	79.6632260948346	1	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	84660751	84649304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656270_84658494_84658546_84659098_84659225_84660678
29166	chr15	-	2406	16	NNC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	28	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	160.12528428286	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCTGGCAGCAGAGTC	NA	False	NA	NA	False	NA	NA	NA	76361449	76337187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339634_76339766_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
29167	chr15	-	1067	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	9896.82080266183	22	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79963948_79964687_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
29168	chr6	+	2835	3	Antisense	novelGene_ENSMUSG00000052962.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTACGGTGGCCGCAGT	NA	False	NA	NA	False	NA	NA	NA	71792139	71800750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_71794734_71795652_71795842_71800698
29169	chr7	-	1714	7	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	897.784201365909	45	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACCCTTTTGTCTCACT	NA	False	NA	NA	False	NA	NA	NA	117728797	117718130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117718994_117719345_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
29170	chr3	+	2905	25	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	216.749663590666	1	109	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCAGTCGTGGTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	54600257	54636179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602657_54604300_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615820_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619685_54621144_54621187_54622108_54622218_54622577_54622678_54622954_54623111_54624996_54625067_54625654_54625801_54627813_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
29171	chr3	-	4037	9	NNC	ENSMUSG00000005034.16	novel	4347	10	NA	NA	152	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	53.7748489072726	1	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGAGTCTTCTGTCCG	2850	False	NA	NA	False	NA	NA	NA	146518563	146435328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461420_146518392
29172	chr5	-	2975	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	32	13	-7	-13	multi-exon	TRUE	canonical	3	162	junction_1	19.5604032422647	516	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGCCTGGAAGGATTTG	NA	False	NA	NA	False	NA	NA	NA	114582089	114569107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
29173	chr1	-	3759	14	Intergenic	novelGene_424	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	57	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGGCTGCGGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	118599971	118555675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118555832_118559970_118560122_118580028_118580106_118580596_118580703_118581443_118581550_118584094_118584249_118586735_118586847_118589707_118589800_118592486_118592538_118592627_118592717_118593840_118593935_118596358_118596464_118597117_118597982_118598368
29174	chr5	-	3016	4	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	436.049181731704	1	153	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963451	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937366_135937683_135938125_135938308_135940506_135963176
29175	chr7	-	2426	11	NIC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	6	-3	intron_retention	FALSE	canonical	3	32	junction_9	92.6736208421792	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCTTGAGTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	105401414	105395128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105399195_105399386_105399538_105401188_105401261_105401377
29176	chr4	+	2327	13	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	36	-372	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	751.625179010271	4	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGCACGGAGTCTCGT	891	False	NA	NA	False	NA	NA	NA	129083730	129113028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083860_129090622_129090713_129090869_129091082_129094518_129094649_129099921_129099998_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108452_129108549_129109018_129109213_129110468_129110613_129112223
29177	chrX	-	1825	4	Antisense	novelGene_ENSMUSG00000031007.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGGCAGCTCTGTGGTAG	NA	False	NA	NA	False	NA	NA	NA	12483277	12472375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_12472573_12473168_12473318_12475071_12475192_12481918
29178	chrX	+	1133	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	60	64	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068869	13070083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069349_13069429
29179	chr11	-	1637	6	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCGCTCCGCGTCCGA	NA	False	NA	NA	False	NA	NA	NA	75656312	75623788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623894_75642692_75642906_75646398_75646507_75647642_75647847_75650114_75650253_75655443
29180	chr17	+	4331	12	NNC	ENSMUSG00000006705.14	novel	2170	12	NA	NA	15	-16	intron_retention	FALSE	canonical	0	0	junction_1	53.8428997291163	1	154	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATGCCTTGTGGACGAT	NA	False	NA	NA	False	NA	NA	NA	31783747	31826651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_31783863_31800889_31801025_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
29181	chr2	-	3706	15	NNC	ENSMUSG00000009207.16	novel	3321	14	NA	NA	-5	5455	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	95.1490774457404	128	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGATTGAATATTGTGTA	NA	False	NA	NA	False	NA	NA	NA	74409265	74345179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_74345864_74347099_74347992_74351715_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
29182	chr1	+	1348	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	227	11	29	-11	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCATGGATTCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	172327840	172334936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
29184	chr15	-	2497	3	ISM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	24396	365	24159	-365	3prime_fragment	FALSE	canonical	3	690	junction_2	57.5	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTGGAACATACTCAG	NA	False	NA	NA	False	NA	NA	NA	51830747	51826000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_51827644_51828350_51828435_51829977
29185	chr8	+	2095	17	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_3	161.765153366694	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85415903	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417401_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
29187	chr7	-	3015	11	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	30	-147	combination_of_known_splicesites	FALSE	canonical	3	13	junction_9	78.1811358321175	1	104	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCCTATGTTTATGTTTT	9634	False	NA	NA	False	NA	NA	NA	3218901	3204644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3213722_3214128_3218840
29188	chr10	+	3085	21	NIC	ENSMUSG00000020064.10	novel	3898	25	NA	NA	-14344	-20	combination_of_known_splicesites	FALSE	canonical	3	11	junction_3	127.662484700871	1	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATAAAATAGTGACATTC	50	False	NA	NA	False	NA	NA	NA	63099837	63153633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_63099965_63105406_63105484_63109229_63109452_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63126958_63127063_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63152478_63152582_63153058
29189	chr4	+	1825	7	NNC	ENSMUSG00000028797.21	novel	1366	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	323.605040477157	10	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3177	False	NA	NA	False	NA	NA	NA	129494473	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129495037_129495199_129495419_129495662_129495724_129495987_129496055_129500879_129500973_129501248
29190	chr19	-	2439	20	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-21	-1	combination_of_known_junctions	FALSE	canonical	3	690	junction_19	186.942819408855	22	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTGTCTGCCTCTT	5038	False	NA	NA	False	NA	NA	NA	53027093	52979611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
29191	chr8	-	2826	10	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_5	71.9312085636833	29	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	NA	NA	NA	106578640	106571304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106575498_106575644_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
29192	chr6	+	2652	14	NNC	ENSMUSG00000030303.16	novel	3395	13	NA	NA	132634	29245	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	58	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAAGCCCGGGTCGCCCG	NA	False	NA	NA	False	NA	NA	NA	148081547	148113501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_148083236_148083383_148083468_148084542_148084591_148089596_148089627_148090981_148091083_148092327_148092383_148096691_148096788_148097494_148097597_148100852_148100897_148102914_148102985_148103993_148104044_148106277_148106383_148108030_148108168_148113459
29193	chr13	-	4467	6	Antisense	novelGene_ENSMUSG00000114617.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCGCGGCTCGTAACCCA	NA	False	NA	NA	False	NA	NA	NA	36597077	36301623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_36301988_36388490_36389123_36416102_36416264_36430344_36430476_36525917_36526077_36594057
29194	chr12	+	1993	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	216	0	-36	0	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	958	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	NA	False	NA	NA	NA	24548573	24608538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
29195	chr15	+	3133	3	NNC	ENSMUSG00000022286.17	novel	3617	9	NA	NA	11985	-5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	32.5	176	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGAGTCAAACAGCTCTC	200	False	NA	NA	False	NA	NA	NA	37347965	37363801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_37348099_37358613_37358679_37360866
29196	chr2	-	2217	23	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.208298895225266	1	86	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGAGACTAGCAGGAGCGG	NA	False	NA	NA	False	NA	NA	NA	146905234	146854991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855120_146866439_146866556_146866634_146866720_146867106_146867225_146868298_146868360_146868434_146868525_146869226_146869300_146869966_146870169_146871255_146871377_146871448_146871547_146871644_146871703_146871786_146871895_146876771_146876817_146878578_146878714_146880086_146880215_146882741_146882842_146883886_146884015_146884092_146884182_146884777_146884788_146893640_146893686_146903164_146903236_146903323_146903461_146905163
29197	chr2	+	1550	11	NNC	ENSMUSG00000068882.14	novel	1563	11	NA	NA	-22	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	541.933722885004	5	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAGCCAATAGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	69691944	69701848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69699151_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
29199	chr9	+	1370	12	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	71	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1059.28066189332	2	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAAAAAAAAGTGACAAC	1260	False	NA	NA	False	NA	NA	NA	108437749	108442760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108439022_108439057_108439372_108439580_108439990_108440079_108440339_108440535_108440619_108440711_108440797_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
29200	chr17	+	1464	2	NNC	ENSMUSG00000092558.4	novel	5680	3	NA	NA	10200	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCGTTTTGGCCTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	47932745	47935174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47932845_47933809
29201	chr15	+	1113	7	ISM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	-5	4879	-5	1077	5prime_fragment	FALSE	canonical	3	68	junction_1	8.18535277187245	3	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACCTCCCGGGAAGGT	NA	False	NA	NA	False	NA	NA	NA	98972853	98976405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127
29202	chr15	+	2238	6	NIC	ENSMUSG00000032783.10	novel	2255	14	NA	NA	-3106	0	intron_retention	FALSE	canonical	3	70	junction_4	8.16333265278342	3	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATGGGGCAGCCAGTG	NA	False	NA	NA	False	NA	NA	NA	98976358	98981284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_98976784_98978746_98978831_98979071_98979851_98980006_98980587_98980789_98980984_98981108
29203	chr4	-	4225	3	FSM	ENSMUSG00000037752.5	ENSMUST00000045550.5	4245	3	14	6	-4	-6	multi-exon	FALSE	canonical	3	48	junction_1	6.5	90	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTACAATTGTTTATTTT	4058	False	NA	NA	False	NA	NA	NA	132459843	132452213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132455882_132458186_132458384_132459483
29204	chr11	+	4045	30	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-113713	-53717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	107	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAACTCAGCGGAACGAA	NA	False	NA	NA	False	NA	NA	NA	62235572	62349347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62235711_62236057_62236145_62242204_62242375_62244061_62244157_62245190_62245308_62245408_62245510_62249675_62249842_62250586_62250760_62257788_62257984_62260117_62260250_62263901_62264281_62267460_62267587_62269339_62269480_62272232_62272297_62273986_62274207_62275547_62275675_62280517_62280621_62281806_62281858_62283328_62283510_62285963_62286057_62289092_62289260_62292018_62292094_62294624_62294678_62295235_62295292_62301641_62301760_62310423_62310606_62313699_62313893_62324387_62324486_62329163_62329340_62349278
29205	chrX	-	1989	8	FSM	ENSMUSG00000031388.15	ENSMUST00000033763.15	962	8	38	-1065	0	1065	multi-exon	FALSE	canonical	3	198	junction_1	315.02562254068	93	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGACAAAAAGAGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	72965512	72959413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72960802_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
29206	chr18	+	3351	6	NIC	ENSMUSG00000024537.6	novel	1300	7	NA	NA	15	-3	intron_retention	FALSE	canonical	1	2	junction_1	169.418534995437	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGCGGTTTTATCTGGA	NA	False	NA	NA	False	NA	NA	NA	67774692	67787229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_67775049_67777378_67777551_67779062_67781317_67781842_67782017_67786222_67786344_67786955
29207	chr4	-	2228	17	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	113.85434774307	8	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	108975160	108918846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108923343_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
29208	chr4	-	2162	9	NIC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	7	10	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	59.0750317393059	544	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTTTTATGGTCA	-14	True	NA	NA	False	NA	NA	NA	34687431	34663246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34673808_34673929_34675029_34675183_34675471_34675632_34683284_34683463_34687243
29209	chr13	-	1530	11	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2918.03790928082	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4748	False	NA	NA	False	NA	NA	NA	58550333	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540190_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544724_58545579_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
29210	chr2	-	2302	7	FSM	ENSMUSG00000018322.11	ENSMUST00000018466.4	2302	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	196.655155030322	1415	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5948	False	NA	NA	False	NA	NA	NA	163913022	163895459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912386
29211	chr13	+	1947	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	-29	0	-29	0	multi-exon	FALSE	canonical	3	97	junction_1	47	1291	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	108180950	108185706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108181021_108182958_108183103_108183973
29212	chr2	+	1691	11	ISM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	68	3	-18	-3	intron_retention	FALSE	canonical	3	1724	junction_1	118.690184935402	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCACAGTCTTTCTCAG	NA	False	NA	NA	False	NA	NA	NA	90884421	90889774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390
29213	chr13	-	3129	8	NNC	ENSMUSG00000021215.16	novel	3871	10	NA	NA	14	122	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	81.4631505526222	2	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACATTTCTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	3943564	3932567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937416_3938340_3938523_3938870_3938979_3943292
29214	chr10	+	2046	7	NNC	ENSMUSG00000006732.15	novel	1791	6	NA	NA	0	1128	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	150.543090914934	555	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	126877826	126883362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147_126882386_126883232
29215	chr2	-	554	1	Genic_Genomic	ENSMUSG00000026672.12	novel	NA	NA	NA	NA	14881	173	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGCCTCTCTTCTAGGT	NA	False	NA	NA	False	NA	NA	NA	5025833	5025279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_5025300_5025800
29216	chr2	-	1784	10	NNC	ENSMUSG00000026672.12	novel	697	5	NA	NA	-9003	1538	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.3298849344562	55	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTGGCCAGGCAGACT	NA	False	NA	NA	False	NA	NA	NA	5051011	5023914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5024541_5031939_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
29217	chr7	-	2210	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	16	-711	0	711	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	1986	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCCTTTGATCCCAGCA	2672	False	NA	NA	False	NA	NA	NA	28011481	28004229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
29219	chr11	+	1629	4	NIC	ENSMUSG00000020280.13	novel	3177	18	NA	NA	-16848	-7492	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	30	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAATTCTGCGAGACTCC	NA	False	NA	NA	False	NA	NA	NA	23598825	23615789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_23599591_23600929_23601056_23605435_23606131_23615746
29221	chr15	+	3062	16	NNC	ENSMUSG00000022186.15	novel	3527	17	NA	NA	62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	88.6660150351995	2	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	NA	False	NA	NA	NA	4056227	4184826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_4056332_4064741_4064855_4066576_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4183209
29222	chr2	+	3717	21	NNC	ENSMUSG00000070544.7	novel	3856	21	NA	NA	-2	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	101.250419752216	1	92	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTACAACTTAACGGAAAC	NA	False	NA	NA	False	NA	NA	NA	160487897	160564665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562989_160563393
29223	chr7	-	2991	13	NNC	ENSMUSG00000002980.15	novel	1449	8	NA	NA	8	-527	intron_retention	TRUE	non_canonical	0	0	junction_1	165.329469040862	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTATACCCAGTCTTTCTA	3972	False	NA	NA	False	NA	NA	NA	19504412	19491008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19491351_19491617_19492494_19492583_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
29224	chr2	+	2693	16	NIC	ENSMUSG00000039205.17	novel	2604	15	NA	NA	5	0	intron_retention	FALSE	canonical	3	47	junction_3	15.4050496771531	162	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTCCCCACCAGCACTG	NA	False	NA	NA	False	NA	NA	NA	32253077	32268311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
29225	chr6	-	2048	19	NNC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.772488879111	181	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTGGAAAACTTAAAGTA	NA	False	NA	NA	False	NA	NA	NA	97182523	97160974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97161491_97161607_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
29226	chr1	-	1548	6	FSM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	0	-589	0	6	multi-exon	FALSE	canonical	3	50	junction_5	839.164012574419	341	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTGTCATGTTTTAAAGT	NA	False	NA	NA	False	NA	NA	NA	161078736	161068578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928_161077040_161078591
29228	chr10	+	3585	2	NNC	ENSMUSG00000049764.9	novel	5097	2	NA	NA	5804	-272	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTCATTTTTAAATCTT	NA	False	NA	NA	False	NA	NA	NA	75874291	75878796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75875056_75875975
29229	chr8	+	2524	8	NNC	ENSMUSG00000031467.11	novel	10779	8	NA	NA	257	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	237.974016760362	12	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTTAATTGAGGGAAAA	NA	False	NA	NA	False	NA	NA	NA	18896551	18933417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_18896759_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929745_18931753
29230	chr19	-	3012	7	NNC	ENSMUSG00000040451.19	novel	3262	6	NA	NA	0	-142	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.7179308807113	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAATAAAAAGGCTTTT	8019	False	NA	NA	False	NA	NA	NA	32188413	32100271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32101435_32101540_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32188227
29231	chr10	+	3485	30	Antisense	novelGene_ENSMUSG00000035673.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	99	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCGCACTTCCGCTTCTG	2909	False	NA	NA	False	NA	NA	NA	79893819	79938538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_79893980_79894085_79894162_79894247_79894380_79894468_79894569_79894641_79894726_79895763_79895914_79895998_79896050_79896213_79896339_79896425_79896492_79896619_79896735_79896816_79896954_79897149_79897284_79897997_79898165_79898399_79898593_79899481_79899563_79899978_79900077_79900153_79900330_79902382_79902529_79902657_79902757_79903103_79903155_79904556_79904608_79904690_79904832_79905122_79905271_79905444_79905538_79905796_79905888_79908192_79908352_79918447_79918559_79920069_79920149_79922090_79922269_79938445
29233	chr10	-	3158	9	NNC	ENSMUSG00000019961.18	novel	3533	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	262.771020805187	413	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTGTTGAATACATG	NA	False	NA	NA	False	NA	NA	NA	91007437	90983432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139_90989260_90994609_90994708_90999904_91000064_91001804_91001928_91007263
29234	chr14	+	2296	3	FSM	ENSMUSG00000060126.15_ENSMUSG00000065147.3	ENSMUST00000150047.8	890	3	0	-1406	0	1	multi-exon	FALSE	canonical	3	5160	junction_2	140	38	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642
29235	chr10	+	4976	5	FSM	ENSMUSG00000019977.17	ENSMUST00000092674.14	2625	5	-21	-2330	-1	2330	multi-exon	FALSE	canonical	3	88	junction_4	452.231688407613	151	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAATTACAATTCTGAG	NA	False	NA	NA	False	NA	NA	NA	21171915	21189438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997
29236	chr3	-	3039	12	FSM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	47	-432	35	-14	multi-exon	TRUE	canonical	3	573	junction_1	36.7913482463625	697	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCAAGTTTGTATTTG	NA	False	NA	NA	False	NA	NA	NA	157737356	157716123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
29237	chr8	-	2089	13	NNC	ENSMUSG00000002949.16	novel	1790	13	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	148.130479270435	1519	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	4325904	4309730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_4310256_4310511_4310931_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
29238	chr7	-	1252	8	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7108.33867901004	7	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126396952	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394953_126395140_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815
29239	chrX	+	2321	10	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-5382	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_7	1116.37241009651	1	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100480814	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
29241	chr7	-	2085	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	32	-2	-30	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	1649	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGCCTGGTTTTTGAGG	7957	False	NA	NA	False	NA	NA	NA	126641611	126626900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
29242	chr17	+	1245	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	115	2	115	-2	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	3	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3151	False	NA	NA	False	NA	NA	NA	35817029	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
29243	chr13	-	3748	14	NIC	ENSMUSG00000021156.18	novel	3796	14	NA	NA	88	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_13	33.3849698669589	2	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACTCTTGTCAGTAAGC	NA	False	NA	NA	False	NA	NA	NA	9814821	9734873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9814763
29244	chrX	-	2185	8	NNC	ENSMUSG00000031266.8	novel	3172	7	NA	NA	18	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.1131015933434	568	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTACACTGCGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	133501736	133488911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_133489313_133490147_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
29245	chr2	-	3118	22	NNC	ENSMUSG00000014355.11	novel	8942	48	NA	NA	6	-2600	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	91.2127164225921	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGATTGCTTTGGACTT	NA	False	NA	NA	False	NA	NA	NA	128529305	128454623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_128454984_128457289_128457425_128459473_128459540_128501740_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
29246	chr2	+	2033	5	NIC	ENSMUSG00000006418.18	novel	3001	8	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	1	17	junction_4	262.466188298607	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTAAGCTGCAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	167345362	167358086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167356585
29248	chr7	-	3049	24	Antisense	novelGene_ENSMUSG00000064451.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	127	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCGGCGTGGAGGCGGGA	NA	False	NA	NA	False	NA	NA	NA	109654285	109617485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109617715_109626275_109626358_109628895_109629045_109630808_109630977_109636154_109636311_109638377_109638461_109639812_109639906_109640017_109640105_109641187_109641323_109641992_109642094_109643617_109643701_109643828_109643940_109645366_109645438_109645874_109646049_109646191_109646352_109647331_109647463_109647998_109648065_109648148_109648261_109648797_109648899_109649984_109650111_109650264_109650436_109650538_109650732_109651914_109652113_109654216
29249	chr3	+	3446	8	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	-34	-5	intron_retention	FALSE	canonical	3	130	junction_1	26.8723361280629	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGAGATTTGCGTTCC	NA	False	NA	NA	False	NA	NA	NA	95190491	95203467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95199595_95199935_95200039_95200935_95201079_95202105_95202737_95202961
29251	chr2	-	3475	2	ISM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	56	5228	-28	1355	5prime_fragment	FALSE	canonical	3	532	junction_1	0	13	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCAAAGTGTTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	168609065	168595479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168598721_168608831
29252	chrX	+	2226	5	NNC	ENSMUSG00000033460.15	novel	2228	5	NA	NA	-32	-2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	54.8925085963467	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACTGTCTTTGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	133618679	133622664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620823
29253	chr13	-	2860	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	28	301	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	259.28121045257	1	140	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTTTAAATTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	9046058	9022214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027273_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035685_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
29254	chr3	+	3171	8	NIC	ENSMUSG00000028048.12	novel	1938	12	NA	NA	-3	-15	intron_retention	FALSE	canonical	3	281	junction_5	23.58397934261	8	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGGGAAAGAGTTCGCT	NA	False	NA	NA	False	NA	NA	NA	89110239	89115971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89114759_89115130_89115295_89115618_89115736_89115823
29255	chr10	+	1446	8	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-1	87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1966.0757454215	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTCCCTGCAAGGACCTA	NA	False	NA	NA	False	NA	NA	NA	126899401	126903253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900323_126900453_126900544_126900729_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
29256	chr6	+	2067	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	-9	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	465.928478351319	3	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACGCTGGCTTTGTCG	2934	False	NA	NA	False	NA	NA	NA	122285948	122294631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286_122293608_122293777
29257	chr11	-	1988	1	NIC	ENSMUSG00000025153.10	novel	10050	43	NA	NA	1456	2483	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGCTTCTTGAGCCCCG	8911	False	NA	NA	False	NA	NA	NA	120704825	120702837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120702800_120704800
29258	chr12	-	3458	13	NNC	ENSMUSG00000021238.12	novel	3399	12	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	67.2858743637094	5	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	84497705	84477490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84496754_84496886_84497662
29259	chr14	-	1799	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	-8	5	-8	-5	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	2450	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATTTCTTGTGGATGCT	NA	False	NA	NA	False	NA	NA	NA	73622737	73599670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
29260	chr4	-	2515	17	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	2846	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	262.977890883911	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCATTGGTGTGCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	120424627	120397069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120405197_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422518_120422637_120424446
29261	chr6	+	2132	16	Antisense	novelGene_ENSMUSG00000029782.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCTACTGCACATGCGCA	NA	False	NA	NA	False	NA	NA	NA	30482459	30509718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_30482975_30487366_30487447_30489290_30489392_30489476_30489590_30491085_30491186_30492597_30492724_30494738_30494834_30497165_30497240_30497818_30497992_30501898_30502102_30505731_30505838_30505891_30505978_30506787_30506917_30508452_30508511_30508663_30508802_30509683
29263	chr11	+	2248	9	NIC	ENSMUSG00000017421.19	novel	2311	11	NA	NA	-2	189	intron_retention	FALSE	canonical	3	18	junction_5	334.292326228108	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACTGTATGGCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	80274154	80286581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80282156_80282228_80282660_80282819_80285111_80286088_80286215
29264	chr8	-	2476	1	ISM	ENSMUSG00000046691.15	ENSMUST00000177068.8	2931	4	7191	64	6813	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTACTGTTTCTTTAATAA	NA	False	NA	NA	False	NA	NA	NA	107613034	107610558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_107610600_107613000
29265	chr4	-	1837	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	60	1273	-32	-1273	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	944	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTCTTTTTTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	114844378	114817805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
29266	chr19	+	2649	16	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	-224	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	310.149598312384	2	68	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTCCAGGCTCAGCTAT	3863	False	NA	NA	False	NA	NA	NA	8919632	8929659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919795_8921376_8921438_8923282_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
29267	chr18	-	1685	14	Antisense	novelGene_ENSMUSG00000034484.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCTGGGCTGGCGCGCCG	NA	False	NA	NA	False	NA	NA	NA	53353472	53309387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_53309687_53322710_53322843_53327499_53327664_53330924_53330993_53331256_53331300_53332826_53332969_53336110_53336190_53342657_53342734_53343399_53343516_53343770_53343863_53345822_53346029_53349450_53349610_53351352_53351431_53353441
29269	chr14	-	851	8	Antisense	novelGene_ENSMUSG00000021932.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAGGCATCTTTTAAATGT	NA	False	NA	NA	False	NA	NA	NA	62609942	62584037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_62584092_62585973_62586138_62590992_62591085_62597909_62598059_62598783_62598888_62601507_62601558_62607897_62608000_62609806
29270	chr5	-	2201	12	NNC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	9	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	176.581589785684	1	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92582941	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570893_92572143_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
29271	chr14	+	2044	11	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.608597384812	2	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	NA	False	NA	NA	NA	19801381	19861855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801437_19848514_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19856579_19856679_19857994_19858153_19860047_19860172_19861021_19861135_19861253
29272	chr5	+	2320	1	Genic_Genomic	ENSMUSG00000075591.3	novel	NA	NA	NA	NA	-451	-22700	mono-exon	FALSE	NA	NA	NA	NA	NA	1	74	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGATCTGGGGAAGCGTC	NA	False	NA	NA	False	NA	NA	NA	138361529	138363849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_138361500_138363800
29273	chr4	+	2642	4	NNC	ENSMUSG00000078508.2	novel	1745	3	NA	NA	-3278	784	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	5.90668171555645	151	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTGAGTATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	144053540	144060819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_144053628_144056792_144057106_144057681_144058255_144059150
29274	chr9	+	3609	5	Antisense	novelGene_ENSMUSG00000062794.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGACTGAGGCCCGCC	1819	False	NA	NA	False	NA	NA	NA	22158727	22171228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_22161836_22162822_22162928_22165150_22165246_22169342_22169467_22171051
29275	chr16	-	2935	17	NNC	ENSMUSG00000022771.18	novel	3088	20	NA	NA	0	-11	intron_retention	FALSE	canonical	0	0	junction_11	185.193975587085	5	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCCCACCCTCATCTGG	NA	False	NA	NA	False	NA	NA	NA	16929106	16906480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16908023_16909038_16909157_16909719_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915307_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
29276	chr9	-	2881	6	Antisense	novelGene_ENSMUSG00000111424.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	49	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGCTCAGACCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	22152403	22137038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_22137128_22146314_22146439_22147317_22147589_22148968_22149081_22149837_22150123_22150403
29277	chr4	-	3413	18	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	266	1544	193	-2	3prime_fragment	FALSE	canonical	3	153	junction_3	21.8307424261955	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGGACTTGTTTGTTAT	292	False	NA	NA	False	NA	NA	NA	25281555	25250148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622
29278	chr5	-	3185	3	FSM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	52	10	0	-10	multi-exon	FALSE	canonical	3	77	junction_1	2.5	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAAAACATTTCTATATT	NA	False	NA	NA	False	NA	NA	NA	25910771	25894819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_25897827_25903248_25903331_25910675
29279	chr17	+	2565	15	NNC	ENSMUSG00000024312.11	novel	2229	15	NA	NA	19	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	78.5502568878222	280	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTTCTGGAGACGTGTCT	1998	False	NA	NA	False	NA	NA	NA	34159652	34168658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162915_34163091_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
29280	chr17	+	2186	4	NNC	ENSMUSG00000003198.11	novel	705	4	NA	NA	-56	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.4009345590327	13	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATTTATGTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	56199411	56205932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56199633_56202820_56202948_56203140_56203202_56204155
29281	chr13	-	2749	7	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	-17	381	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.389761098597	8	38	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCCATGTGTCTAGG	6791	False	NA	NA	False	NA	NA	NA	62860584	62846838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848493_62848576_62849126_62853514_62853576_62853943_62854071_62854209_62854379_62855967_62856024_62860451
29282	chr5	+	3626	7	Antisense	novelGene_ENSMUSG00000025747.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	69	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAAACCAGGACCTTCCT	2558	False	NA	NA	False	NA	NA	NA	30266101	30278576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30266132_30266965_30267700_30267926_30268431_30269096_30269187_30273465_30273638_30274830_30276705_30278354
29284	chr16	+	2867	3	NIC	ENSMUSG00000023147.18	novel	2495	5	NA	NA	1164	-5	intron_retention	FALSE	canonical	2	2	junction_1	187.5	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGACTGGGTACTGTGGA	NA	False	NA	NA	False	NA	NA	NA	95954173	95959041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_95954963_95955280_95955396_95957078
29285	chr8	+	1707	14	ISM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	6306	2337	4716	-2337	internal_fragment	FALSE	canonical	3	978	junction_11	53.7335085475386	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGACAAGGTGAGTGGG	8125	False	NA	NA	False	NA	NA	NA	106943873	106977089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939
29286	chr6	+	2947	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	23	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	184.235733655433	1	89	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACGCCATGTCTAATAA	5749	False	NA	NA	False	NA	NA	NA	83254397	83281922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276451_83277452_83277521_83280307_83281623_83281694
29289	chr1	+	2263	5	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	540.598915555701	40	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAGAAAGGGAGAGAGCG	NA	False	NA	NA	False	NA	NA	NA	180720672	180726659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014_180725911_180726111
29290	chr8	-	3394	11	Antisense	novelGene_ENSMUSG00000015568.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	96	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTTCCACTGCACAGCT	NA	False	NA	NA	False	NA	NA	NA	69359581	69333206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69333492_69340093_69340255_69345245_69345425_69347276_69347388_69348308_69348550_69349252_69349492_69352066_69352188_69353795_69353981_69354933_69355035_69357154_69357816_69358471
29291	chr10	-	1627	12	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	20	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	717.047527730759	2	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTGATCTGTATAT	NA	False	NA	NA	False	NA	NA	NA	116899699	116886901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116899596
29292	chr17	+	2401	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	125	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	105.90675143729	1	90	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17284499	17309885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284754_17305782_17305910_17306151_17306213_17307505_17308915_17309250_17309552_17309636
29293	chr7	-	3882	12	NIC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	906	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	32.0206544912746	104	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	NA	False	NA	NA	NA	140906500	140877097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354
29294	chr19	+	2477	12	NIC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	-14	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	351.529597404315	6	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCCGGGTCCGTTT	820	False	NA	NA	False	NA	NA	NA	6413937	6427220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6426325
29295	chr17	+	2328	13	ISM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	10242	3	-6370	-3	3prime_fragment	FALSE	canonical	3	1624	junction_5	140.458079946375	1	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	3489	False	NA	NA	False	NA	NA	NA	87989999	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
29296	chr2	-	1840	8	NIC	ENSMUSG00000015647.10	novel	11388	79	NA	NA	-473	-7	intron_retention	FALSE	canonical	3	271	junction_7	26.4220069067358	32	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGACTTGAGTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	179820669	179818172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179818558_179818680_179818987_179819066_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513
29297	chr7	+	1669	14	Antisense	novelGene_ENSMUSG00000003868.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	307	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCTCAGCGGAAACGGAAA	8845	False	NA	NA	False	NA	NA	NA	45071326	45083706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_45071430_45071515_45071941_45072112_45072231_45073501_45073619_45073703_45073799_45074100_45074230_45074374_45074469_45074567_45074674_45077901_45077973_45078079_45078206_45078876_45079019_45079331_45079388_45080742_45080798_45083674
29298	chr12	+	1310	6	ISM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	2194	261	1406	-261	3prime_fragment	FALSE	canonical	3	5416	junction_5	560.906551931781	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTACACCCGTGGGACT	NA	False	NA	NA	False	NA	NA	NA	24760433	24763884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
29299	chr15	-	2588	11	NIC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	0	4985	intron_retention	FALSE	canonical	3	1416	junction_3	110.196597043647	8	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACACACACACACACAAAT	NA	False	NA	NA	False	NA	NA	NA	96953837	96905808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_96906395_96906538_96906619_96906743_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
29300	chr18	-	2216	5	NNC	ENSMUSG00000047989.12	novel	2498	5	NA	NA	-34	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	384.052730754515	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTGGGGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	24254926	24237816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24238631_24238710_24239716_24244771_24244840_24247136_24247245_24254705
29301	chr8	-	1536	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	41	4	35	-4	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	3219	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTCTGTGTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	108315055	108307016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
29302	chr18	+	5112	12	NNC	ENSMUSG00000044393.16	novel	5766	15	NA	NA	21087	5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	47.4177844378218	114	40	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTCCATGTCTTCCTA	NA	False	NA	NA	False	NA	NA	NA	20712389	20737583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_20712536_20713568_20713736_20715764_20715903_20715993_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120_20727349_20729016_20729139_20731395_20731726_20734369_20736600_20736655
29303	chr5	+	3005	13	NNC	ENSMUSG00000029179.15	novel	2485	13	NA	NA	13	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	31.2608869924632	45	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAATATTTATGGATTG	NA	False	NA	NA	False	NA	NA	NA	52940408	52981896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52978086_52981793
29305	chr19	+	1456	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	-30	-395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	3018.32275185657	1	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAAGATCTTCAAGTGAAC	813	False	NA	NA	False	NA	NA	NA	8944374	8955448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954937_8955307
29306	chr2	-	3421	9	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	65	-3	combination_of_known_junctions	FALSE	canonical	3	25	junction_8	26.2678510731274	124	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATATTCTGGTCTGGTA	1230	False	NA	NA	False	NA	NA	NA	35335780	35290197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35335707
29307	chr11	+	2897	21	NNC	ENSMUSG00000035152.15	novel	3269	21	NA	NA	15	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.709672953047	1	76	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCCAGTCAGCCTGTAAT	2225	False	NA	NA	False	NA	NA	NA	83193574	83293475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83223989_83226220_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256476_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281612_83288586_83288736_83293395
29308	chr17	+	2884	17	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	780.421600803053	1	110	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4959	False	NA	NA	False	NA	NA	NA	87980055	88031141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_87985643_87985782_87987258_87987369_87987410_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003933_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
29309	chr1	+	2505	11	Antisense	novelGene_ENSMUSG00000013593.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCCGGGCGGAAGTCGC	NA	False	NA	NA	False	NA	NA	NA	171062429	171074684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_171062653_171062837_171062903_171063928_171064012_171064176_171064271_171064708_171065942_171066083_171066161_171066277_171066469_171066844_171066963_171068514_171068707_171073659_171073767_171074562
29310	chr3	-	2183	2	NNC	ENSMUSG00000027944.14	novel	837	2	NA	NA	248	-15	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTTATTTATGCTAAAG	7773	False	NA	NA	False	NA	NA	NA	89905421	89902778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903674_89904133
29311	chr11	+	2763	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	74	95	-9	-79	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	1	115	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	117223244	117253055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
29312	chr14	-	2356	9	NNC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	36	16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	215.771870270432	1	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCACTGAGTCAGGTGTG	NA	False	NA	NA	False	NA	NA	NA	40656237	40628385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40628952_40629049_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144
29313	chr15	-	2067	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	-154	3	-154	-2	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	1458	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTTCTTTTATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99149996	99140700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
29314	chr13	-	2554	16	NNC	ENSMUSG00000006191.18	novel	2629	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	47.6036413173054	6	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTATTGGACTTT	NA	False	NA	NA	False	NA	NA	NA	30039622	29509283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961236_30030201_30030324_30033921_30034092_30038880_30038925_30039545
29315	chr16	-	2660	5	FSM	ENSMUSG00000033157.18	ENSMUST00000128348.3	827	5	-11	-1822	-6	-4	multi-exon	FALSE	canonical	3	25	junction_2	130.370625525845	63	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGTATGGTGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	45563276	45550091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45563139
29316	chr13	+	2615	15	NIC	ENSMUSG00000057649.7	novel	2407	16	NA	NA	17	-3	intron_retention	FALSE	canonical	3	32	junction_5	35.7380635131993	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTCTGATCACCCCGTCC	NA	False	NA	NA	False	NA	NA	NA	74086287	74109005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
29317	chr17	+	1693	10	NNC	ENSMUSG00000068039.14	novel	1902	11	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1616.82671220015	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135298	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136929_13137059_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142444_13142581_13143146
29318	chr15	-	2679	14	NNC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_12	85.9491386685743	14	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCCATTTACTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	89239815	89235349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89238984_89239558
29319	chr8	+	1884	7	ISM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	48	335	-3	166	intron_retention	FALSE	canonical	3	1933	junction_5	93.2434090610877	18	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTCATGCGTCATCGT	NA	False	NA	NA	False	NA	NA	NA	95584125	95590535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148
29320	chr7	-	1711	12	NNC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	725.542179714904	13	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTCTTGATGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	79765080	79744596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79746919_79746949_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
29321	chr17	-	3672	21	NIC	ENSMUSG00000019214.15	novel	3208	22	NA	NA	-4	-9	intron_retention	FALSE	canonical	3	468	junction_20	78.5125945310687	13	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACAGAGAGTGTGGGTCA	5679	False	NA	NA	False	NA	NA	NA	25946388	25938029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
29322	chr3	-	2049	8	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	26	-1658	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	121.944785096555	5	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATTGCCTTTTTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	19217203	19187223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19207624_19207685_19211635_19211857_19217073
29323	chr7	+	2461	17	NIC	ENSMUSG00000030534.14	novel	2574	23	NA	NA	-6	-2426	intron_retention	FALSE	canonical	3	97	junction_6	16.3128591914477	1	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAGCAAAAAGCTGAATTT	NA	False	NA	NA	False	NA	NA	NA	79919420	79938200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935647_79935758_79935814_79936855_79936903_79937525
29324	chr9	-	3692	13	Antisense	novelGene_ENSMUSG00000032586.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACGACTTCCGGTAGTGAA	NA	False	NA	NA	False	NA	NA	NA	107849402	107828171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_107828370_107833058_107833116_107833538_107833627_107836012_107836053_107836635_107836766_107838176_107839539_107840027_107840119_107840526_107840615_107845790_107845947_107847200_107847250_107847665_107847817_107847905_107847958_107848172
29325	chrX	-	1004	1	Antisense	novelGene_ENSMUSG00000084131.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACCACCATTGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	73215525	73214521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73214500_73215500
29326	chr15	-	3245	7	NNC	ENSMUSG00000053411.17	novel	528	6	NA	NA	-7	6	intron_retention	FALSE	canonical	2	4	junction_5	186.069655416101	537	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79855327	79800001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79809224_79809286_79814786_79814831_79855069
29327	chr5	+	2831	10	ISM	ENSMUSG00000058013.12	ENSMUST00000201421.4	2428	11	-28	1491	-28	-2	5prime_fragment	FALSE	canonical	0	0	junction_9	238.326107116559	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTGTGTGCCCGTTTG	NA	False	NA	NA	False	NA	NA	NA	93241356	93322815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93321331
29328	chr7	+	1746	6	ISM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	1004	-8	148	1	intron_retention	FALSE	canonical	3	276	junction_3	12.0233106921513	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTCGAATCAGCTTGCT	314	False	NA	NA	False	NA	NA	NA	141048338	141051384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222
29329	chr17	+	5308	26	FSM	ENSMUSG00000038545.14	ENSMUST00000043464.14	5530	26	219	3	-7	-3	multi-exon	TRUE	canonical	3	53	junction_11	16.0216853046114	86	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGACCTGTATGGGACTG	NA	False	NA	NA	False	NA	NA	NA	46961481	46975287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46961642_46962362_46962945_46963385_46963538_46963650_46964125_46964675_46964815_46964911_46965109_46965359_46965586_46966440_46966679_46966769_46966876_46967919_46968148_46968369_46968461_46968557_46968730_46968853_46968960_46969247_46969344_46969533_46969710_46969987_46970122_46970392_46970576_46970788_46970896_46970984_46971168_46972219_46972381_46972561_46972779_46972850_46973158_46973983_46974130_46974247_46974375_46974463_46974670_46974893
29331	chr1	-	630	5	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-486	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2830.83356760866	5	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATGTGTCGGAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	16173558	16171523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173043_16173435
29332	chr4	+	3028	9	NIC	ENSMUSG00000028414.18	novel	6080	10	NA	NA	11	182	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	15.7003184681076	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCCAAAAAACCCCCAA	3	True	NA	NA	False	NA	NA	NA	53714173	53762969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_53714196_53720006_53720210_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
29333	chr14	+	2166	10	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	21	-217	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	174.764603586272	1	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTGTTTTGCATCTGT	NA	False	NA	NA	False	NA	NA	NA	54598318	54606913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54598375_54598778_54598926_54600738_54600847_54604193_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
29334	chr15	+	1912	9	NNC	ENSMUSG00000060992.10	novel	2438	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	43	junction_8	348.783578132629	2675	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGTGTGATGGCTC	NA	False	NA	NA	False	NA	NA	NA	103181326	103208292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103206890
29336	chr3	+	1984	13	Antisense	novelGene_ENSMUSG00000015748.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACGTGACTACGGAAGGC	5218	False	NA	NA	False	NA	NA	NA	95741394	95763177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_95741515_95742665_95742838_95742955_95743056_95743725_95743872_95747983_95748062_95751497_95751664_95752235_95752543_95754685_95754908_95755076_95755163_95756228_95756373_95758873_95759009_95760758_95760947_95763057
29337	chr10	+	1601	11	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	26	-1225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	464.820406178558	6	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATATATTTGAAGTTA	NA	False	NA	NA	False	NA	NA	NA	128173704	128197123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188677_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
29339	chr11	-	2605	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	2	-95	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.147467918033	3	83	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCATTTTGACGGAGTT	NA	False	NA	NA	False	NA	NA	NA	11758930	11750382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11751295_11751526_11753064_11756095_11756216_11758894
29340	chr2	+	1530	6	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-6	-9	intron_retention	FALSE	canonical	3	2861	junction_1	931.907377371807	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTTGACTGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	26800822	26803321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26800843_26801017_26801139_26801433_26802172_26802377_26802814_26802999_26803070_26803176
29341	chr11	+	2195	9	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	-52	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	960.640012895049	28	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGCTTAAAATTACTTTA	NA	False	NA	NA	False	NA	NA	NA	97206681	97220749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307_97219457_97219555
29342	chr5	+	936	5	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1823	2648	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTCAAACTCATCAATGCA	675	False	NA	NA	False	NA	NA	NA	138162861	138165556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163182_138163311_138163429_138164174_138164343_138164946_138165027_138165305
29343	chr11	-	2030	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	67	0	67	0	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	1	87	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5268	False	NA	NA	False	NA	NA	NA	88846224	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
29345	chr4	-	2163	11	Antisense	novelGene_ENSMUSG00000028811.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCTAGTCCCGTCGGGTTG	9075	False	NA	NA	False	NA	NA	NA	129113004	129083723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_129083864_129090620_129090764_129090903_129091082_129094518_129094648_129103447_129103580_129104284_129104367_129107733_129107878_129108450_129108547_129109016_129109213_129110470_129110610_129112220
29346	chr16	+	3505	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	32	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	440.896617121995	1	174	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTCAGCCATGCTT	NA	False	NA	NA	False	NA	NA	NA	13598608	13632679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606825_13606954_13607398_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624615_13626862_13626955_13628367_13628521_13629385_13629474_13630960
29347	chr15	-	4641	5	NNC	ENSMUSG00000022361.15	novel	5212	5	NA	NA	15	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.9765453086705	37	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTGCTAATGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	57939595	57910704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_57912207_57915619_57918479_57927450_57927577_57932714_57932826_57939552
29348	chr6	+	2955	11	NIC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	-61	148	intron_retention	FALSE	canonical	3	738	junction_2	60.8510476491572	3	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACTGCTAGCATCCCAG	NA	False	NA	NA	False	NA	NA	NA	124640073	124681128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
29349	chr4	+	4280	27	Intergenic	novelGene_1826	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	236	15	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTACAAAGCGGCGGC	3133	False	NA	NA	False	NA	NA	NA	41194335	41275099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41195228_41195320_41195528_41195609_41195672_41195744_41195856_41195946_41196042_41196325_41196540_41196732_41196809_41199452_41199569_41199700_41199903_41201465_41201530_41202273_41202460_41203533_41203574_41205525_41205740_41206152_41206330_41206837_41207105_41209352_41209570_41211704_41211895_41216565_41216636_41218314_41218362_41221553_41221622_41223355_41223474_41227172_41227277_41229694_41229859_41233611_41233718_41235518_41235590_41251529_41251672_41275039
29351	chr6	-	1320	7	NIC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	0	intron_retention	FALSE	canonical	3	5197	junction_3	428.359661966437	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125437690_125438188_125438273_125439076_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
29352	chr9	-	3574	6	NIC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	87	-11	intron_retention	FALSE	canonical	3	232	junction_2	26.9027879596149	4	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGTGAAGAGCAGTCA	9535	False	NA	NA	False	NA	NA	NA	57459462	57451549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57452222_57452477_57452687_57453676_57455994_57456319_57456462_57457855_57458057_57459429
29353	chr4	+	3023	2	Intergenic	novelGene_2042	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	96	junction_1	0	75	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGGAGACTGTATTCC	2304	False	NA	NA	False	NA	NA	NA	146289362	146296551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146291510_146295675
29354	chr8	+	3206	7	NIC	ENSMUSG00000055681.15	novel	2753	8	NA	NA	6	-2	intron_retention	FALSE	canonical	3	1283	junction_6	37.4596078759805	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTCTGCCTGATACCCAC	736	False	NA	NA	False	NA	NA	NA	70755451	70765638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70759302_70760599_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
29355	chr3	+	1939	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	682.026791540258	1	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3844	False	NA	NA	False	NA	NA	NA	88204462	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220949_88225654_88225834_88227766_88228013_88228320_88228453_88228750
29356	chr3	-	1717	11	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	294.847079008763	6	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	170	False	NA	NA	False	NA	NA	NA	153650091	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628640_153631301_153631544_153635902_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
29357	chr3	+	2474	17	NIC	ENSMUSG00000027774.17	novel	4078	18	NA	NA	0	259	combination_of_known_splicesites	TRUE	canonical	0	0	junction_6	185.496251646765	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGATGTATATATAATATT	NA	False	NA	NA	False	NA	NA	NA	67337428	67382396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
29359	chr17	-	2493	15	NIC	ENSMUSG00000005823.10	novel	2405	17	NA	NA	6	5	intron_retention	FALSE	canonical	3	119	junction_10	27.8311233796164	92	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGACCACCTGTTGAG	NA	False	NA	NA	False	NA	NA	NA	57554657	57541938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57542367_57542922_57543048_57543155_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
29360	chr5	-	1444	2	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	260	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125464421_125466760
29361	chr10	+	3327	4	Antisense	novelGene_ENSMUSG00000000901.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGGCCAGGCCGGGC	NA	False	NA	NA	False	NA	NA	NA	75759064	75768306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_75759949_75761250_75763324_75764112_75764343_75768166
29362	chrX	+	1779	6	NIC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	879.144265749371	1	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357373	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139374527_139374688_139375917
29363	chr7	+	1476	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	48	9	-7	-9	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAATGGGACTGCCAGACC	NA	False	NA	NA	False	NA	NA	NA	142606523	142621662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
29365	chr16	-	3103	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24814	2	-9871	-2	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	1	125	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACGCATTCCTGCAACC	NA	False	NA	NA	False	NA	NA	NA	22230450	22200067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
29366	chr13	-	2388	4	NIC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	92	junction_1	78.7950929098168	27	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAACTATGGGTGCATAT	6808	False	NA	NA	False	NA	NA	NA	62860567	62847221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_62849306_62853514_62853576_62853943_62854071_62860451
29367	chr19	+	1632	8	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	7	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1237.79689079313	10	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	637	False	NA	NA	False	NA	NA	NA	10582957	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585711_10604896_10605023_10605125_10605229_10605788_10605913_10606442
29368	chr15	+	1820	11	NIC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	2	20	junction_1	440.245715481707	14	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGTGCTAGTCATTTAT	200	False	NA	NA	False	NA	NA	NA	38662192	38692687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_38662328_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
29369	chr13	+	774	1	Intergenic	novelGene_1399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAATCATGATGATTTC	NA	False	NA	NA	False	NA	NA	NA	62424295	62425069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62424300_62425100
29370	chr2	+	2266	21	Antisense	novelGene_ENSMUSG00000027185.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTAAGTGGCAGACAGCAC	NA	False	NA	NA	False	NA	NA	NA	103552238	103591534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103552249_103556474_103556577_103557058_103557236_103558149_103558260_103558346_103558442_103560592_103560640_103560852_103560988_103561650_103561769_103562316_103562395_103562500_103562599_103563261_103563383_103564090_103564182_103564714_103564873_103565212_103565332_103570088_103570237_103573390_103573491_103573612_103573700_103574627_103574758_103587527_103587604_103588013_103588139_103591393
29371	chr3	+	2805	4	FSM	ENSMUSG00000015750.16	ENSMUST00000197232.2	2679	4	-496	370	0	17	multi-exon	FALSE	canonical	3	313	junction_2	11.0453610171873	5	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTGGGGGGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	95801280	95804774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95802304_95802454_95802883_95803029_95803158_95803548
29372	chr17	+	1178	2	ISM	ENSMUSG00000091705.9	ENSMUST00000074806.12	1262	7	889	120	889	-120	intron_retention	FALSE	canonical	3	9	junction_1	0	1	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTCTGATATCTCTCTC	5769	False	NA	NA	False	NA	NA	NA	35562106	35564650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35562365_35563730
29373	chr17	+	492	1	Intergenic	novelGene_153	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAACAAAAACCCAAAC	NA	False	NA	NA	False	NA	NA	NA	35546613	35547105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_35546600_35547100
29374	chr9	-	2429	12	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	3	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.1088824216403	1	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTTTGCTTAACAGCCA	NA	False	NA	NA	False	NA	NA	NA	13738400	13719106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13720033_13720106_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
29379	chr11	+	2719	11	NNC	ENSMUSG00000020783.15	novel	12106	13	NA	NA	15801	-9102	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	91.6469312088517	7	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTTTGTGTCTCTGACT	7906	False	NA	NA	False	NA	NA	NA	72954499	72971041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72954687_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
29380	chr17	+	1870	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	14	170	11	0	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	797	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCGTTTTGGCCTTCTGG	NA	False	NA	NA	False	NA	NA	NA	47922520	47935173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
29382	chr10	-	3427	14	NNC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-23	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	120.115871079583	5	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCTCCAGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	81332199	81322292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81326457_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
29383	chr10	+	2203	14	NNC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_9	102.246193198909	2	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTCCATATCATGGACT	NA	False	NA	NA	False	NA	NA	NA	75404499	75422016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75404804_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420761_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
29385	chr10	-	5235	6	FSM	ENSMUSG00000020100.16	ENSMUST00000117513.8	5240	6	0	5	0	-5	multi-exon	FALSE	canonical	3	34	junction_2	5.08330601085553	41	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCTTGGTTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	60588561	60547855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_60552270_60556639_60556803_60559542_60559770_60566348_60566432_60586164_60586464_60588512
29386	chr11	+	2431	8	NIC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	-6	752	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	90.6979737865163	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017298	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105026163_105026271_105028544_105028611_105030386
29387	chr5	-	1480	9	Antisense	novelGene_ENSMUSG00000029247.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGTGTTCTGGAAAACAAG	330	False	NA	NA	False	NA	NA	NA	77114820	77099623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77099681_77104390_77104588_77107158_77107339_77108954_77109135_77109237_77109352_77110271_77110356_77112286_77112468_77114091_77114252_77114493
29389	chr17	+	1739	10	NNC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.659601870963	4	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	15720183	15737689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15720287_15721541_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735977_15736965_15737160_15737310
29390	chr17	+	2352	2	NIC	ENSMUSG00000024181.10	novel	1134	4	NA	NA	13	1	intron_retention	FALSE	canonical	3	1408	junction_1	0	14	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGTCCTGTGAGTTCT	NA	False	NA	NA	False	NA	NA	NA	26342530	26345588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26344539_26345244
29391	chr5	+	3636	3	FSM	ENSMUSG00000092354.8	ENSMUST00000174864.2	787	3	-10	-2839	0	669	multi-exon	FALSE	canonical	3	40	junction_1	52	210	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTCCGTGCTTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	101985307	101994945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_101985425_101989616_101989940_101991749
29392	chr9	-	3363	15	Antisense	novelGene_ENSMUSG00000035382.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	28	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGTGCAATGTGCCTCTC	NA	False	NA	NA	False	NA	NA	NA	45838946	45818539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_45819947_45820554_45821032_45821670_45821808_45822381_45822545_45824244_45824338_45825625_45825681_45826383_45826523_45827283_45827397_45830067_45830225_45830540_45830650_45831087_45831192_45837207_45837366_45838031_45838125_45838332_45838415_45838870
29393	chr4	+	1769	1	Intergenic	novelGene_1803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGTGACAACATAAAACCAT	6612	False	NA	NA	False	NA	NA	NA	12146912	12148681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_12146900_12148700
29394	chr1	-	4237	10	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	8	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.0846056571511	7	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTAGTGGGGGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	171854854	171828532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171828786_171830160_171831463_171831534_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
29395	chr2	+	2294	17	ISM	ENSMUSG00000026790.20	ENSMUST00000184845.8	3035	20	-11	8561	2	-2	5prime_fragment	FALSE	canonical	3	101	junction_2	295.633793473869	2	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAACCCTGCGTGTTGCAC	7195	False	NA	NA	False	NA	NA	NA	29779798	29812546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_29779934_29782197_29782289_29783049_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
29396	chrX	+	1730	7	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1793	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1260.23680534872	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTTTATGTCCTAT	NA	False	NA	NA	False	NA	NA	NA	74147761	74153364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74147882_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151786_74151911_74152301
29397	chr13	-	1672	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	29	-102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	866.964690831137	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTTTATTGATTGAATC	NA	False	NA	NA	False	NA	NA	NA	97334836	97312940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313018_97313294_97313410_97313563_97313666_97314430_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
29398	chr3	+	2670	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	151	6	-120	-1	multi-exon	FALSE	canonical	3	130	junction_1	26.9118359384908	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGATTTGCGTTCCTACC	NA	False	NA	NA	False	NA	NA	NA	95190405	95203471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
29399	chr11	+	1839	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	198	447	65	182	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	3	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940716	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
29400	chr4	+	4328	22	NNC	ENSMUSG00000041216.16	novel	3604	6	NA	NA	115682	217396	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0.21295885499998	44	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGCTGCCAAGAGCGCTC	NA	False	NA	NA	False	NA	NA	NA	9451290	9669087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_9453445_9474896_9475034_9475391_9475481_9484470_9484608_9508626_9508764_9514587_9514675_9517631_9517733_9529883_9530026_9531918_9532066_9537678_9537765_9542223_9542311_9583811_9583857_9594662_9594699_9595376_9595423_9598709_9598781_9601306_9601364_9602468_9602502_9604515_9604634_9610845_9610938_9635898_9635974_9639201_9639350_9668784
29401	chr8	+	1938	15	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	38	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGACTAGCGTAGAACT	NA	False	NA	NA	False	NA	NA	NA	112720075	112737932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112720338_112721494_112721639_112723090_112723218_112724206_112724294_112724921_112725010_112725155_112725327_112725430_112725595_112726701_112726822_112728115_112728235_112728326_112728379_112728416_112728524_112729146_112729236_112729905_112730067_112732264_112732421_112737841
29402	chr2	+	955	1	NIC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	1258	-491	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACTGACAGCCATTCCA	NA	False	NA	NA	False	NA	NA	NA	127438850	127439805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_127438800_127439800
29403	chr7	-	3561	21	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-2558	-8	intron_retention	FALSE	non_canonical	0	0	junction_16	42.0493460115612	1	108	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGATTTCTGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	140691145	140681145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688701_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067
29404	chr5	+	1829	2	NNC	ENSMUSG00000075591.3	novel	2355	4	NA	NA	-461	-22679	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	57	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCACCCTCTTTATCA	NA	False	NA	NA	False	NA	NA	NA	138361519	138363870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138362296_138362817
29405	chr11	+	1438	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-38	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCTGGACAGTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653711_120653860
29406	chr16	+	2345	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-25	-23	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	196.919329224488	4	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAAAATATTACACTAAAT	NA	False	NA	NA	False	NA	NA	NA	48104124	48114577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48110658_48111376_48111678_48113273_48113470_48114061
29407	chr6	-	2471	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43488	-294	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	74	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGCCTAGCTGCGTCCG	NA	False	NA	NA	False	NA	NA	NA	71852182	71808362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808503_71821629_71821696_71823332_71823457_71828749_71828863_71829711_71829852_71833896_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849908_71851300
29408	chr4	+	3779	24	FSM	ENSMUSG00000028894.19	ENSMUST00000094782.10	3809	24	30	0	2	0	multi-exon	FALSE	non_canonical	1	6	junction_2	64.214933278441	235	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGTTCTCTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	124635672	124695304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124635710_124636256_124636384_124636728_124636824_124637428_124637527_124637666_124637697_124639864_124639976_124645104_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
29409	chr11	+	1995	1	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	201	37	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTATTCTGAACCTGACAT	4476	False	NA	NA	False	NA	NA	NA	115472774	115474769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115472800_115474800
29410	chr17	-	2819	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-4	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	180.724910660742	1	107	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATTGAGTGTAGCCT	2376	False	NA	NA	False	NA	NA	NA	45744471	45702819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715712_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
29411	chr11	-	2174	6	NIC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	-690	-4	intron_retention	FALSE	canonical	3	71	junction_5	13.230268326833	2	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATCTTTTCTTGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	115786652	115783424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115785545_115785821_115785957_115786240
29412	chr2	-	1514	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	99	3	13	1	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	3863	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATCTGGTTTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	130126368	130121231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
29413	chr4	+	1778	4	FSM	ENSMUSG00000039768.17	ENSMUST00000133959.8	688	4	12	-1102	2	1102	multi-exon	FALSE	canonical	3	865	junction_1	56.0079359456219	3	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCGTTATGGACCTGAGC	9125	False	NA	NA	False	NA	NA	NA	152018202	152043054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559
29414	chr8	+	2064	17	NIC	ENSMUSG00000001909.17	novel	2138	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_3	175.146724205736	4	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	NA	False	NA	NA	NA	85415911	85426416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85415979_85416336_85416538_85417145_85417202_85417401_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
29415	chr3	-	3005	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	-211	5	-120	-5	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	268	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATCCAGTTGCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	84490052	84403404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
29416	chr4	-	4660	29	NNC	ENSMUSG00000040964.17	novel	4508	29	NA	NA	-19016	-47	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_26	64.308041757574	2	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGGTCTCTGGGAGATG	NA	False	NA	NA	False	NA	NA	NA	140412339	140241842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_140242843_140244056_140244180_140248475_140248651_140264079_140264229_140269944_140270100_140271549_140271774_140274310_140274398_140279838_140279961_140290024_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344309_140401745_140401917_140411591_140411749_140412224
29417	chr3	+	2894	19	NNC	ENSMUSG00000105852.5	novel	2566	18	NA	NA	-27	207	intron_retention	FALSE	canonical	1	2	junction_7	483.164711965691	9	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGCATTTTTTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	105866791	105892123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105872644_105872739_105873080_105873190_105873672_105873742_105874478_105874676_105881728_105882360_105883286_105883344_105884979_105885146_105885589_105885715_105887213_105887323_105887407_105887594_105888548_105888666_105891888
29418	chr1	+	4545	8	NIC	ENSMUSG00000026349.15	novel	6738	9	NA	NA	96	-217	intron_retention	FALSE	canonical	2	4	junction_3	204.341950301599	1	212	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTGTTTTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	127701996	127733452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_127702123_127702837_127702920_127719341_127719471_127722991_127723055_127725577_127725934_127727126_127727291_127729342_127729414_127729898
29419	chr8	+	3414	8	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	33	3204	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	305.29269996687	6	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGAAGTTTCTTCAAC	NA	False	NA	NA	False	NA	NA	NA	20016498	20058702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030757_20039783_20039904_20045732_20045999_20052877_20053142_20055368_20055417_20055523_20055604_20056462
29420	chr11	-	3332	6	NNC	ENSMUSG00000000120.7	novel	3446	6	NA	NA	1448	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	29.4441844852256	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAACGATGCCAAGAG	NA	False	NA	NA	False	NA	NA	NA	95477113	95459646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95476972
29421	chr15	-	3701	1	Intergenic	novelGene_3308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	94	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTCTTTGAAATCCCTT	5443	False	NA	NA	False	NA	NA	NA	74524629	74520928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_74520900_74524600
29422	chr15	-	2942	1	Intergenic	novelGene_3307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTGTCTATCTCACAGA	9455	False	NA	NA	False	NA	NA	NA	74520617	74517675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_74517700_74520600
29423	chr3	+	3082	12	ISM	ENSMUSG00000037400.18	ENSMUST00000198599.2	4102	25	22455	17069	4219	9517	intron_retention	FALSE	canonical	2	274	junction_3	49.1566899342221	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCACAGGTAAGGCTCTT	2406	False	NA	NA	False	NA	NA	NA	35866209	35893354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634
29424	chr4	-	1939	6	NNC	ENSMUSG00000028964.15	novel	715	6	NA	NA	5	1460	at_least_one_novel_splicesite	FALSE	canonical	3	153	junction_5	2247.37505548139	4	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGGGACCTCATAGCCT	NA	False	NA	NA	False	NA	NA	NA	150994320	150984006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994264
29425	chr4	-	2222	1	NIC	ENSMUSG00000028964.15	novel	908	7	NA	NA	2471	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCAGCTACCTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	150983821	150981599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_150981600_150983800
29426	chr9	+	3460	12	Genic_Genomic	ENSMUSG00000079564.4	novel	1250	4	NA	NA	-14637	-1274	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	30	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTGTTTTCTTGATGCC	NA	False	NA	NA	False	NA	NA	NA	49414950	49478051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_49416864_49419888_49420008_49421004_49421210_49454334_49454445_49455952_49456124_49456454_49456552_49456900_49457084_49457457_49457609_49468395_49468539_49476168_49476341_49476767_49476887_49477974
29427	chrX	+	2553	11	NNC	ENSMUSG00000031256.12	novel	2717	11	NA	NA	15	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	280.483083268849	3	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCAAGTTTTGCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	132960097	132976611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973882_132974027_132974874_132975060_132975292
29428	chr9	-	2474	14	NNC	ENSMUSG00000000168.11	novel	4035	14	NA	NA	281	651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	344.918136244036	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAAGATTTATGTATTTA	NA	False	NA	NA	False	NA	NA	NA	50570799	50547176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570097_50570533
29430	chr11	-	1707	1	Intergenic	novelGene_2528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCGACCTCAGAAATCCT	3466	False	NA	NA	False	NA	NA	NA	115417020	115415313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_115415300_115417000
29431	chr9	+	2255	9	NIC	ENSMUSG00000032336.18	novel	2024	8	NA	NA	-1	-4	intron_retention	FALSE	canonical	2	4	junction_1	162.90852494575	4	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGCTTGGAATAATACTC	15	False	NA	NA	False	NA	NA	NA	58489687	58560157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_58489810_58525945_58526294_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
29433	chr3	-	3474	4	FSM	ENSMUSG00000053870.8	ENSMUST00000066568.6	3518	4	36	8	1	-8	multi-exon	FALSE	canonical	3	25	junction_3	2.16024689946929	62	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTAAAGTAGAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	154799004	154790562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_154793707_154795748_154795842_154797027_154797196_154798935
29435	chr14	-	2957	9	Antisense	novelGene_ENSMUSG00000021806.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	69	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTCTCTGCGGGCCACA	NA	False	NA	NA	False	NA	NA	NA	19832284	19801373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_19801634_19802308_19802616_19813731_19813967_19818277_19819004_19828061_19828212_19828803_19829049_19829601_19829656_19831200_19831735_19831838
29436	chr2	+	2394	14	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-441	intron_retention	FALSE	canonical	3	800	junction_1	78.8557967836895	2	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164675725	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164680073_164680560_164680651_164680764_164680870_164681070
29437	chr6	-	1696	6	FSM	ENSMUSG00000030057.16	ENSMUST00000113617.3	952	6	-18	-726	2	-79	multi-exon	FALSE	canonical	3	59	junction_4	4719.63282470151	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTTTGTTTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	87828060	87820142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87825996_87826092_87827885
29438	chr11	-	2560	9	NIC	ENSMUSG00000025140.16	novel	2914	8	NA	NA	-12	-8	combination_of_known_junctions	FALSE	canonical	2	46	junction_1	319.603269695415	173	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCATCACCACCTGGCTA	NA	False	NA	NA	False	NA	NA	NA	120534542	120526545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120528061_120531025_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
29439	chr2	+	1595	13	NNC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	735.553457533094	10	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8596	False	NA	NA	False	NA	NA	NA	61542086	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_61542218_61550787_61550916_61553053_61553110_61589093_61589193_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
29442	chr4	+	2767	16	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	44.2053792603972	46	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	141171994	141194536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190908_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
29443	chr2	+	1828	13	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	0	-438	intron_retention	FALSE	canonical	3	77	junction_1	267.934330677417	23	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	164675766	164681501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675913_164676239_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
29444	chr9	+	4111	12	NNC	ENSMUSG00000032384.17	novel	7208	14	NA	NA	60	355	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9.91784434056294	1	95	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTCTCATCTTCCTTAA	NA	False	NA	NA	False	NA	NA	NA	65816429	65949543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65816451_65857297_65857347_65865610_65865975_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65939520_65939628_65946858
29445	chr15	+	2951	22	FSM	ENSMUSG00000042303.20	ENSMUST00000139517.9	2997	22	28	18	14	-18	multi-exon	FALSE	canonical	3	124	junction_4	14.7956603308487	214	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAGACTGGCAAGTCAGT	NA	False	NA	NA	False	NA	NA	NA	80861993	80896473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
29446	chr7	-	2196	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	-11	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	621.456675883364	2	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTAAGACAAAGCCTGTGA	NA	False	NA	NA	False	NA	NA	NA	99002457	98994588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995068_98995104_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
29447	chr1	-	2121	5	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	224	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	456.372312372256	1077	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTTCGCCCTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	119432300	119398037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432247
29448	chr17	+	2775	19	Antisense	novelGene_ENSMUSG00000077931.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTATGGGGGCAGGCACT	NA	False	NA	NA	False	NA	NA	NA	36267730	36274669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36268482_36268571_36268646_36268734_36268796_36268961_36269137_36269219_36269250_36269960_36270032_36270120_36270193_36270324_36270613_36270759_36270881_36271000_36271085_36271465_36271620_36271704_36271844_36271928_36272114_36272585_36272716_36272877_36272979_36274017_36274153_36274211_36274284_36274459_36274567_36274644
29449	chr17	-	1920	7	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	1	-589	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1146.76187831457	2	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCGTGTGAGTACATGCC	NA	False	NA	NA	False	NA	NA	NA	47093581	47085421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47086577_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092712_47092812_47093544
29450	chr11	-	1524	5	NNC	ENSMUSG00000016559.15	novel	2514	6	NA	NA	4	-336	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6553.5819785824	1	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCAACTAAGTGTCAAACC	NA	False	NA	NA	False	NA	NA	NA	115915336	115913122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914192_115914325_115914362_115914450_115914600_115914707_115914846_115915204
29451	chr15	-	3390	12	FSM	ENSMUSG00000075600.4	ENSMUST00000100538.4	3362	12	-32	4	-32	-4	multi-exon	FALSE	canonical	3	58	junction_8	44.618492997359	265	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTTGGCCTGTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	75713796	75626282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75711104_75712414_75713698
29452	chr9	+	2333	10	NNC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	-6	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	277.140736187088	35	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799554	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20799614_20799702_20800401_20800606_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
29453	chr17	-	1597	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	4	791	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGGAATGTCTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	36149105	36145705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145803_36145868_36146932_36147054_36147166_36147519_36147629_36148888
29454	chr7	+	1479	13	NIC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	15	-250	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	362.911940267731	3	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTCTTGCATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	120234500	120258497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_120234546_120236884_120236969_120237070_120237221_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
29455	chr10	+	2423	13	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	7137	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	293.215743476066	1	85	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAACCAACAGATCTGGCC	1280	False	NA	NA	False	NA	NA	NA	60127419	60138366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60134946_60135240_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
29456	chr6	-	1354	12	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2397	-1655	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGGGGAGGTTCCATC	NA	False	NA	NA	False	NA	NA	NA	83034651	83031782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83031812_83031889_83032027_83032106_83032261_83032486_83032670_83032876_83032951_83033046_83033125_83033350_83033414_83033520_83033624_83033737_83033859_83033957_83034073_83034251_83034374_83034476
29457	chr19	-	2591	17	Antisense	novelGene_ENSMUSG00000025001.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	81	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAACAAAGATTTAGAAT	NA	False	NA	NA	False	NA	NA	NA	38956612	38928912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38928957_38929041_38929143_38932155_38932383_38933832_38934018_38935168_38935311_38938629_38938827_38940276_38940374_38941984_38942147_38943067_38943273_38943355_38943489_38945471_38945561_38945639_38945759_38947485_38947604_38948111_38948273_38953040_38953141_38953852_38953927_38956175
29458	chr6	+	2879	13	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	107	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAGAATCAGTAAAAGGT	1080	False	NA	NA	False	NA	NA	NA	122295259	122313976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295609_122296282_122296506_122296854_122297007_122297170_122297283_122297896_122298010_122298827_122299046_122299288_122299431_122299965_122300643_122302522_122302917_122310255_122310407_122311032_122311112_122311933_122312042_122313815
29459	chr15	+	1378	14	ISM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	-14	6212	-14	3164	5prime_fragment	FALSE	canonical	3	1573	junction_6	136.675359323302	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCGGAAGCTAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	84076427	84095256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237
29460	chr8	+	2112	5	ISM	ENSMUSG00000002342.18	ENSMUST00000147656.8	2109	11	1889	2338	-1	-201	internal_fragment	FALSE	canonical	3	184	junction_1	19.6341539160719	30	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTAGCCAGCATGACCCA	7763	False	NA	NA	False	NA	NA	NA	70626951	70633187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516
29461	chr2	-	2482	9	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	-5	-5	intron_retention	FALSE	canonical	3	250	junction_7	30.4464180980292	19	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCTTGTCTAGTAGGAT	9023	False	NA	NA	False	NA	NA	NA	25246349	25242306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040
29462	chr16	+	3036	18	NNC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	-11	-12	intron_retention	FALSE	canonical	0	0	junction_3	105.085992139508	4	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAAGAGAGGAGGACACG	NA	False	NA	NA	False	NA	NA	NA	20367414	20380117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20367496_20367715_20367864_20367984_20368065_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370637_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
29463	chr11	+	2135	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	12	1	1	-1	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	1336	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	98573391	98586804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
29466	chr11	+	1777	13	NNC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	-37	-2807	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	281.191944625415	5	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATATTCTAAATATCT	NA	False	NA	NA	False	NA	NA	NA	102919373	102956931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954679_102954753_102954802_102955555_102955694_102956573
29468	chr8	-	3346	20	NIC	ENSMUSG00000031537.16	novel	3580	22	NA	NA	322	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_9	24.1571493979735	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	NA	False	NA	NA	NA	23196219	23149227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097
29469	chr2	-	2148	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	22	0	22	0	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	473	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGACTGCTGTGGTGC	NA	False	NA	NA	False	NA	NA	NA	144392767	144384184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
29470	chr15	-	2931	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	102	0	0	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	1	127	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	81614102	81588453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
29471	chr14	+	1997	4	FSM	ENSMUSG00000060126.15_ENSMUSG00000065147.3	ENSMUST00000154533.8	762	4	-24	-1211	0	2	multi-exon	FALSE	canonical	3	5160	junction_2	155.938021876214	40	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGAACTCTTTGCTGTGA	1076	False	NA	NA	False	NA	NA	NA	76082770	76085739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133
29472	chr16	+	3485	2	ISM	ENSMUSG00000021018.9	ENSMUST00000231656.2	689	4	0	122	0	-121	intron_retention	FALSE	canonical	3	834	junction_1	0	13	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTCTTCAGTTTGTCTGA	1069	False	NA	NA	False	NA	NA	NA	20536579	20540893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20536745_20537573
29474	chr15	-	1225	8	ISM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	9650	-1	439	1	3prime_fragment	FALSE	canonical	3	5838	junction_6	322.899112316361	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	9986	False	NA	NA	False	NA	NA	NA	36599567	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448
29475	chr17	-	2098	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	1	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906496	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
29476	chr17	+	2339	6	NIC	ENSMUSG00000023902.19	novel	2609	7	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	111.941055917836	11	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCCTGATTTTTTTACT	881	False	NA	NA	False	NA	NA	NA	23819831	23829990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240_23828441_23828536
29477	chr8	+	1390	5	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	7	359	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	346.289889399041	105	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATTTGTTATTTCAT	NA	False	NA	NA	False	NA	NA	NA	107783515	107785657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107783623_107783724_107783812_107783904_107784311_107784678_107784820_107785008
29478	chr10	-	2496	9	NIC	ENSMUSG00000019814.6	novel	2297	11	NA	NA	65	-471	intron_retention	FALSE	canonical	2	3	junction_2	241.756301624177	6	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCATAACATGAACGGAAT	NA	False	NA	NA	False	NA	NA	NA	13068847	13054354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_13054741_13054866_13055068_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851
29479	chr14	+	3722	14	FSM	ENSMUSG00000021987.10	ENSMUST00000022563.9	3813	14	58	33	13	-33	multi-exon	FALSE	canonical	3	64	junction_3	13.0256915000032	77	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTATTTAAAGGCAATTAA	NA	False	NA	NA	False	NA	NA	NA	60502734	60539786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_60502811_60514577_60514695_60517531_60517695_60519385_60519544_60522365_60522495_60526991_60527127_60529442_60529576_60530366_60530477_60530832_60530959_60533568_60533619_60534022_60534224_60535511_60535644_60536363_60536491_60537721
29481	chr8	-	1652	10	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-93	-241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	534.017154207292	19	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85573656	85568719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569043_85569430_85569474_85569568_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
29483	chr7	+	6045	31	NNC	ENSMUSG00000047248.21	novel	6602	32	NA	NA	87	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	12.6717533646032	4	111	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTGCTGTGAACATAGT	NA	False	NA	NA	False	NA	NA	NA	100021574	100103644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100021704_100023470_100023741_100029174_100029333_100039285_100039510_100040139_100040388_100044374_100044508_100044961_100045052_100048874_100049023_100055164_100055314_100056068_100056279_100056923_100057037_100059538_100059658_100062529_100062656_100065255_100065748_100067650_100067803_100068857_100069105_100071721_100071903_100073946_100074131_100075183_100075357_100076379_100076504_100079256_100079526_100079943_100080034_100081177_100081781_100084964_100085304_100089379_100089519_100090238_100090304_100092563_100092770_100093513_100093648_100097918_100098081_100100775_100100997_100103497
29484	chr13	-	2772	6	NNC	ENSMUSG00000094870.9	novel	2966	8	NA	NA	-95	-101	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	74.911681332086	1	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAATAACAACCACGT	NA	False	NA	NA	False	NA	NA	NA	120244541	120226824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120239968_120240057_120244307
29485	chr12	-	1935	15	Antisense	novelGene_ENSMUSG00000070166.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAACACACAACTTCCGG	8783	False	NA	NA	False	NA	NA	NA	21364828	21336397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21336476_21343228_21343352_21345026_21345207_21346645_21346738_21347789_21347937_21350034_21350217_21351414_21351574_21352357_21352506_21355302_21355454_21356770_21356883_21357993_21358092_21358903_21358998_21360195_21360293_21363770_21363864_21364647
29486	chr6	+	3628	14	NIC	ENSMUSG00000029913.15	novel	2155	15	NA	NA	25	-1	intron_retention	FALSE	canonical	3	111	junction_5	22.1789387808296	5	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTACGGCTCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	65756033	65913356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
29487	chr4	-	4790	21	NNC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	5325	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	13.8693907580686	1	79	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCCAAAGCTACCTGTGG	NA	False	NA	NA	False	NA	NA	NA	63316266	63285372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_63286524_63288708_63288890_63289128_63289249_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822_63313158_63313301_63313872_63316111
29488	chr15	+	1367	4	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	630.303630535845	117	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4461	False	NA	NA	False	NA	NA	NA	80139700	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141278_80141319
29489	chr7	-	1974	9	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	3084	9216	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAGAAGACGACAAAGGA	NA	False	NA	NA	False	NA	NA	NA	79965867	79956121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79956268_79957303_79957442_79959138_79959232_79960485_79960634_79960815_79960935_79961970_79962074_79962777_79962956_79963273_79963315_79964859
29490	chr12	+	4676	7	FSM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	22	0	22	0	multi-exon	FALSE	canonical	3	25	junction_5	5.84284938098603	62	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTCTGCTGGCTGCAT	NA	False	NA	NA	False	NA	NA	NA	4132604	4160606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801
29491	chr17	-	2100	8	FSM	ENSMUSG00000024327.17	ENSMUST00000169397.9	1550	8	-26	-524	-6	1	multi-exon	FALSE	canonical	3	49	junction_7	197.419371296905	54	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34250662	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797_34250237_34250521
29492	chr11	+	1480	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	42	-18	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	120653661	120655227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653735_120653820
29493	chr9	-	1992	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	14	-226	14	226	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	788	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCCAAAGGTTGGCTT	8965	False	NA	NA	False	NA	NA	NA	57460032	57451312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
29495	chr9	-	671	3	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2417	4	194	-4	3prime_fragment	FALSE	canonical	3	15409	junction_1	167.5	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	9517	False	NA	NA	False	NA	NA	NA	78386589	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559
29496	chr5	+	2660	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	13	2	13	0	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	1590	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCGTGTGTGTCTCAGG	NA	False	NA	NA	False	NA	NA	NA	142946110	142958938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
29497	chr2	+	3615	25	NIC	ENSMUSG00000057738.15	novel	8018	57	NA	NA	6884	-8	combination_of_known_junctions	FALSE	canonical	3	10	junction_18	127.105264501078	2	36	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCCCTCTAAAGGCTTT	7920	False	NA	NA	False	NA	NA	NA	29900983	29921449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29901120_29901197_29901345_29903457_29903562_29903687_29903851_29905600_29905733_29905945_29906084_29907209_29907315_29908373_29908583_29909938_29910060_29910439_29910562_29911202_29911336_29912451_29912551_29914913_29915074_29915533_29915611_29916022_29916233_29916532_29916830_29917030_29917144_29917642_29917661_29918655_29918719_29919631_29919687_29920011_29920209_29920328_29920383_29920463_29920611_29920686_29920835_29920982
29498	chr2	-	2909	11	NNC	ENSMUSG00000033808.17	novel	2897	20	NA	NA	24416	0	intron_retention	FALSE	non_canonical	0	0	junction_8	132.47645073748	2	41	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	120210134	120185792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204969_120205994_120208373_120208474_120210071
29500	chrX	+	2358	16	NNC	ENSMUSG00000001127.13	novel	2358	16	NA	NA	0	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	97.2871123131025	392	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTTGCTTCCCGACT	6305	False	NA	NA	False	NA	NA	NA	20714813	20726768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718146_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
29501	chr12	+	4631	9	NNC	ENSMUSG00000012076.9	novel	2609	10	NA	NA	2	-1	intron_retention	TRUE	canonical	0	0	junction_8	62.6955690220609	5	92	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTAGTGTTGTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	55883190	55916520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912714
29502	chr11	+	3016	6	Antisense	novelGene_ENSMUSG00000082503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGGTCCCAGGCAGGCCG	NA	False	NA	NA	False	NA	NA	NA	54608320	54678015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_54610549_54611066_54611182_54614397_54614502_54631063_54631377_54647231_54647386_54677913
29503	chr3	+	1626	7	ISM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	44	723	-3	-721	intron_retention	FALSE	canonical	3	743	junction_2	155.968390672241	13	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGGGCCGGTCGGGAGA	NA	False	NA	NA	False	NA	NA	NA	89084823	89089349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481
29504	chr7	-	2049	11	NNC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	67	0	intron_retention	TRUE	non_canonical	0	0	junction_6	182.748351565753	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976516	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971829_125972941_125973009_125973093_125973246_125974238_125974363_125975832_125975912_125976008
29505	chr2	+	3360	30	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	59	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	338.199337542798	1	168	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTGGTGTCTGATTAT	NA	False	NA	NA	False	NA	NA	NA	146854974	146919924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870022_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893685_146903168_146903238_146903325_146903458_146905152_146905281_146910715_146910776_146916804_146916947_146919402
29508	chr11	-	1977	15	NNC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	-14	41	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_12	382.031679421527	684	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAAGTTGAAGCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	96807336	96798600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806541_96806604_96806976_96807023_96807209
29509	chr7	-	1967	3	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	1765	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGTCTTGGGATAATGA	NA	False	NA	NA	False	NA	NA	NA	42125022	42122799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123512_42123697_42124408_42124477
29512	chr2	+	3977	18	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	10668	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	125.109585182344	1	166	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAATCATTTGAAA	3420	False	NA	NA	False	NA	NA	NA	126559947	126601207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126560108_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575882_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
29513	chr7	+	2855	14	NNC	ENSMUSG00000038943.17	novel	3026	14	NA	NA	-2	-130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	344.575547147948	1	114	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTTATTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	79944224	79965869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954333_79954424_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79964861
29514	chr13	+	1886	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	-37	0	-37	0	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	1165	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	99481256	99552070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
29515	chr3	-	488	1	Intergenic	novelGene_3070	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTATGATTCTTAAACA	NA	False	NA	NA	False	NA	NA	NA	5925886	5925398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_5925400_5925900
29516	chr11	-	3319	7	NNC	ENSMUSG00000032782.20	novel	3861	19	NA	NA	-5	43	intron_retention	FALSE	canonical	3	15	junction_3	31.0089592788206	1	76	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGAGATGAGCTTGGTCC	NA	False	NA	NA	False	NA	NA	NA	69214606	69205558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69205684_69206015_69206253_69209771_69209867_69210178_69211801_69212181_69212246_69212674_69212760_69213515
29517	chr12	+	1953	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	-153	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2005.23198990375	1	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758401	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759426_24760361_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
29518	chr13	+	953	8	NNC	ENSMUSG00000021645.17	novel	1222	9	NA	NA	11	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	256.993289835373	42	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTTTGAAATCTTGACT	NA	False	NA	NA	False	NA	NA	NA	100261376	100274189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268898_100274003
29519	chr2	-	3291	18	NNC	ENSMUSG00000034101.15	novel	5294	18	NA	NA	0	-89	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	95.8822446769508	1	97	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAAGTTTAATTGTCCT	NA	False	NA	NA	False	NA	NA	NA	84481084	84433061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446828_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749_84480914_84480976
29521	chrX	-	2044	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	84	-194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	554.905695211819	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTCTTGACCCCACGA	NA	False	NA	NA	False	NA	NA	NA	100128874	100123021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125804_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128759
29523	chr11	+	2097	13	NIC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-24	-2	combination_of_known_junctions	FALSE	canonical	2	20	junction_10	178.089143564552	6	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTATCTGATTTGTT	4310	False	NA	NA	False	NA	NA	NA	102321319	102327631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326594_102326769_102326849_102327075_102327160
29525	chr9	+	1746	7	NIC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	-1268	-2	intron_retention	FALSE	canonical	3	1203	junction_3	85.6687742931396	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCCCTTGTTCCTCTG	NA	False	NA	NA	False	NA	NA	NA	106359784	106362619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_106360236_106360317_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
29526	chr9	-	3754	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	6	-796	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	465.741015884956	1	139	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGTTCCAGTTCTCATT	NA	False	NA	NA	False	NA	NA	NA	96993080	96958413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971872_96971930_96975129_96975231_96979155_96979234_96982127_96982293_96992963
29527	chr19	-	2440	11	NNC	ENSMUSG00000024982.11	novel	2263	11	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	162.400615762379	82	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCAAAAAGCATTGTTTT	7441	False	NA	NA	False	NA	NA	NA	55304462	55286737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55303948
29528	chr2	-	2342	9	NIC	ENSMUSG00000005882.19	novel	2413	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_4	143.430677942343	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	NA	False	NA	NA	NA	155771970	155688813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
29529	chr2	+	2685	2	ISM	ENSMUSG00000035772.12	ENSMUST00000123533.8	2429	4	3	296	3	-296	intron_retention	FALSE	canonical	3	620	junction_1	0	14	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAAATGTTTGTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	28358096	28360881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28358155_28358254
29530	chr10	+	3098	5	NIC	ENSMUSG00000061371.8	novel	2360	4	NA	NA	-2	412	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	14.0423466699836	20	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTGTGTTCATTCTTC	NA	False	NA	NA	False	NA	NA	NA	81883954	81900991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350_81897183_81900022
29531	chr1	-	1293	3	ISM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	8273	-32	8273	32	3prime_fragment	FALSE	canonical	3	420	junction_2	18	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTTCCTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	13189114	13183648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_13184712_13186003_13186106_13188986
29532	chr6	-	1470	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	7	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTGGAGGACTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	87828004	87820078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820505_87820643_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
29533	chr17	+	1853	1	ISM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	93587	3	19053	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAATATTGCTGTGACTC	NA	False	NA	NA	False	NA	NA	NA	26874049	26875902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26874000_26875900
29534	chr15	+	1568	14	Antisense	novelGene_ENSMUSG00000022464.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAATTTCCATCCTGTGA	NA	False	NA	NA	False	NA	NA	NA	96897369	96953836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96897515_96903700_96903825_96906292_96906395_96906538_96906621_96906745_96907016_96907823_96907886_96907994_96908079_96908163_96908247_96910780_96910872_96911313_96911393_96914008_96914125_96914641_96914733_96917604_96917742_96953734
29535	chr3	+	2355	15	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	76	-5830	intron_retention	FALSE	non_canonical	0	0	junction_14	317.754108501193	1	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTGTGTGTAACTGAGG	NA	False	NA	NA	False	NA	NA	NA	63883602	63924170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923007_63924053
29536	chr17	+	2340	6	FSM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	357	1	-46	-1	multi-exon	FALSE	canonical	3	1677	junction_4	112.874443520223	962	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGTTTTCCATTCAT	NA	False	NA	NA	False	NA	NA	NA	29710083	29715085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29710200_29710298_29710406_29710493_29710545_29710638_29711006_29712695_29712873_29713563
29537	chr16	+	2047	1	NIC	ENSMUSG00000055692.22	novel	781	7	NA	NA	3569	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCATAACATAAGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	17099033	17101080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17099000_17101100
29538	chr19	+	3168	11	NNC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	-4	60	intron_retention	FALSE	non_canonical	0	0	junction_6	388.482689447033	2	137	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAGCAAAACAACACATG	24	False	NA	NA	False	NA	NA	NA	46064447	46072960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069973_46070816_46070954_46071807_46071958_46072065_46072189_46072283_46072450
29539	chr4	-	1893	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	-4	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3612.9610898451	19	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTAAATTCGAGGCCAGC	NA	False	NA	NA	False	NA	NA	NA	119151691	119134637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151565
29540	chr17	+	2130	8	FSM	ENSMUSG00000014767.18	ENSMUST00000162505.8	12794	8	36	10628	2	324	multi-exon	FALSE	canonical	3	150	junction_1	66.6565978791022	585	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAAAGCCTTGAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	15720185	15738013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
29541	chr5	+	1642	14	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	41	558	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	275.245194617024	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGGTAAGCTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	31652178	31668761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660860_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
29545	chr5	+	2022	14	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	349.534720321257	2	53	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815925	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822145_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069_33829130_33829325
29547	chr11	-	2950	12	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	124.806825941744	13	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGCATCTTTCAATACA	3560	False	NA	NA	False	NA	NA	NA	115494698	115475081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479215_115482462_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
29548	chr2	+	2897	27	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	129	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	508.249990904513	1	134	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146855044	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855122_146866434_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869238_146871414_146871549_146871653_146871700_146871788_146871897_146876773_146876819_146878585_146878716_146880088_146880180_146882735_146882884_146883931_146884016_146884099_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
29549	chr15	-	3205	16	FSM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	41	56	14	-7	multi-exon	FALSE	canonical	3	68	junction_1	18.9415475139235	89	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGAGTTTTTGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	100449848	100400683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
29551	chr11	-	3715	8	NIC	ENSMUSG00000018669.15	novel	2201	13	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	1008	junction_5	84.7608881693987	1	125	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCGTGGCTGGCAGTCA	NA	False	NA	NA	False	NA	NA	NA	96807197	96798643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96804309_96804490_96804623_96806976
29552	chr3	+	2150	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	3330	1	-524	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCAGAGTCACAAGCCTC	NA	False	NA	NA	False	NA	NA	NA	41510166	41567969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
29553	chr15	-	3028	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	11	5	11	-2	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	1	139	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACACAGTGAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	38300939	38294661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
29554	chr2	-	3711	4	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	26	-94	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	11	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAATGCAGGCTTACT	NA	False	NA	NA	False	NA	NA	NA	106804716	106792965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
29555	chr6	+	2441	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	1	-2	1	2	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	262	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTCTTTCTATGTCCT	-33	True	NA	NA	False	NA	NA	NA	17065148	17105824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
29556	chr6	-	3107	18	Intergenic	novelGene_4170	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	36	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTGAAAGATGACATG	NA	False	NA	NA	False	NA	NA	NA	52743765	52698354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_52698461_52698538_52698565_52704197_52704285_52706263_52706452_52710173_52710332_52713831_52713980_52714062_52714156_52716526_52716715_52718935_52719159_52719674_52719824_52721206_52721338_52723652_52723754_52728067_52728196_52730289_52730360_52734536_52734712_52735195_52735341_52742005_52742087_52742855
29557	chr8	-	2781	7	ISM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	5007	-3	5007	3	3prime_fragment	FALSE	canonical	3	71	junction_5	12.6018076304773	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTACGTGTCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	78332275	78322607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250
29558	chr16	-	1941	8	FSM	ENSMUSG00000022757.20	ENSMUST00000065515.14	1945	8	4	0	4	0	multi-exon	FALSE	canonical	3	474	junction_2	54.3950027716757	1128	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	False	NA	NA	False	NA	NA	NA	56537809	56510694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_56511517_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
29559	chr8	-	2648	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1745	-456	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	71.5	29	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCGGTAATATTTCTGT	6776	False	NA	NA	False	NA	NA	NA	72156178	72143855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_72145800_72145960_72146544_72156057
29560	chr15	-	3024	8	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	-2534	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	217.403978335076	1	142	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	8463	False	NA	NA	False	NA	NA	NA	83022646	83010176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83012257_83013394_83013462_83015681_83015800_83016773_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332
29561	chr13	+	2910	4	Antisense	novelGene_ENSMUSG00000075054.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGCTTCCGGTTCGGGGG	NA	False	NA	NA	False	NA	NA	NA	18160777	18167934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_18163190_18164160_18164368_18166212_18166334_18167764
29563	chr19	-	1850	6	NIC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-39	-7	intron_retention	FALSE	canonical	3	1089	junction_1	77.0246713722298	2467	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCCGCTGCCTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	7183638	7175581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7176605_7176736_7176932_7177027_7177427_7181422_7181522_7181754_7181817_7183566
29564	chr8	-	1796	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	89	-335	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1382.2545673243	2	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGCTGCAGTACACTT	NA	False	NA	NA	False	NA	NA	NA	26337633	26307348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318842_26318888_26321296_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329955_26330039_26330104_26337606
29568	chr11	-	3669	7	FSM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	329	-1	329	1	multi-exon	FALSE	canonical	3	1035	junction_3	37.418429802557	403	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTGGAATGAACTTTTT	5796	False	NA	NA	False	NA	NA	NA	95955885	95938256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95941241_95942559_95942651_95946663_95946777_95949141_95949254_95951762_95951951_95953820_95953894_95955777
29569	chr18	+	3204	19	NNC	ENSMUSG00000041238.17	novel	3209	19	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	65.4151037793959	2	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATAACTAAAATGTGGAT	3242	False	NA	NA	False	NA	NA	NA	11790436	11875934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851940_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871631_11871727_11873982_11874125_11875672
29571	chr3	+	2230	5	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-105	-287	intron_retention	FALSE	canonical	3	403	junction_2	42.6636554927025	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTATCTGTCTCCTTCCA	7482	False	NA	NA	False	NA	NA	NA	108291604	108295208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291748_108292285_108293724_108293815_108294053_108294593_108294712_108294914
29572	chr13	-	3972	6	NNC	ENSMUSG00000046351.12	novel	815	5	NA	NA	7	-11	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	41.947586342959	2	127	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATACTCCATTTTTGTCT	9027	False	NA	NA	False	NA	NA	NA	23553357	23537283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_23538689_23539603_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
29573	chr3	-	2307	11	NNC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	-2885	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	170.38262822248	1	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGACTGTCTTGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	30704903	30678418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_30679052_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30702239_30702593_30704510
29574	chr12	+	5092	22	NNC	ENSMUSG00000021171.9	novel	5560	22	NA	NA	351	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_18	40.103324600224	108	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTAATATGTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	116245221	116336711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_116245293_116281449_116281492_116282423_116282559_116284746_116284824_116287459_116287533_116287740_116287831_116297820_116297877_116303166_116303288_116305695_116305873_116307057_116307141_116310123_116310173_116311345_116311436_116311838_116311935_116320731_116320807_116321467_116321555_116327014_116327165_116329174_116329549_116330549_116330649_116331389_116331460_116332355_116332462_116333631_116333682_116333790
29575	chr5	-	1864	9	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-62	-259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	203.434725403506	8	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34093656	34055518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056270_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
29576	chr2	+	3374	2	Antisense	novelGene_ENSMUSG00000006800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCTGCAGGCTGCACTC	NA	False	NA	NA	False	NA	NA	NA	165915974	165919405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165918842_165918898
29577	chr11	-	2605	9	NIC	ENSMUSG00000041654.16	novel	2664	10	NA	NA	-26064	-1	combination_of_known_splicesites	FALSE	canonical	3	33	junction_8	194.753048756624	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	NA	False	NA	NA	False	NA	NA	NA	113482669	113135679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113452831_113452951_113482607
29579	chr9	+	2272	8	NNC	ENSMUSG00000010048.11	novel	2054	11	NA	NA	-509	-34	intron_retention	FALSE	non_canonical	0	0	junction_5	247.30085783457	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGATAAGAGAGAATTAAAC	NA	False	NA	NA	False	NA	NA	NA	107467125	107470203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107467222_107467307_107467862_107467994_107468046_107468130_107468310_107468400_107469038_107469273_107469403_107469474_107469571_107469673
29580	chr5	+	809	1	NIC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-193	209	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTACTTTATGGCTGTA	NA	False	NA	NA	False	NA	NA	NA	45657487	45658296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45657500_45658300
29581	chr11	+	1227	1	Intergenic	novelGene_2428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATACTGAGTTTCTTACT	NA	False	NA	NA	False	NA	NA	NA	83381974	83383201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_83382000_83383200
29582	chrX	-	2309	11	NNC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.5817532740011	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	NA	False	NA	NA	NA	36373993	36355330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36356315_36359266_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
29583	chr17	-	3267	2	FSM	ENSMUSG00000034868.10	ENSMUST00000131820.2	369	2	0	-2898	0	-12	multi-exon	FALSE	canonical	3	1981	junction_1	0	2	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAATATATCCGGATTTCT	3404	False	NA	NA	False	NA	NA	NA	71297525	71281032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71284242_71297467
29585	chr6	-	2794	9	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	142	-2	intron_retention	FALSE	canonical	3	189	junction_8	90.1703249411912	2	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGAGCCTGTTGTTGGG	7176	False	NA	NA	False	NA	NA	NA	88818670	88812897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88816213_88816312_88816473_88816608_88816754_88817691
29587	chr18	+	2204	4	FSM	ENSMUSG00000037058.17	ENSMUST00000236414.2	718	4	-819	-667	9	0	multi-exon	FALSE	canonical	3	36	junction_1	1373.52126545848	34	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	5269	False	NA	NA	False	NA	NA	NA	35732298	35750239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35733171_35743923_35744088_35746375_35746556_35749251
29589	chr5	-	2147	5	NNC	ENSMUSG00000105987.5	novel	345	4	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.74536878161602	1	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATACTATTCTAGTCTGA	5257	False	NA	NA	False	NA	NA	NA	23917664	23903298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23905150_23905278_23905472_23915363_23915407_23916113_23916149_23917639
29590	chr7	-	1720	8	Antisense	novelGene_ENSMUSG00000033685.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2577	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCTGCGAACCCGCGCC	NA	False	NA	NA	False	NA	NA	NA	100148814	100142567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100142671_100143418_100143581_100145930_100146153_100146298_100146513_100147282_100147478_100147552_100147655_100147773_100148123_100148441
29591	chr8	-	2609	19	NNC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	6	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	137.622997737198	1	76	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGTCTTGACCTCCTTC	1031	False	NA	NA	False	NA	NA	NA	3671296	3660086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_3660220_3660310_3660418_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668208_3668542_3668667_3668944_3669094_3671227
29592	chr2	-	1717	3	Antisense	novelGene_ENSMUSG00000026749.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAACTTGTCTGCCTGAAT	8317	False	NA	NA	False	NA	NA	NA	38476369	38471697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_38471801_38471972_38472507_38475289
29593	chr11	-	1274	9	NIC	ENSMUSG00000020541.13	novel	4308	16	NA	NA	-4	-736	intron_retention	FALSE	canonical	3	215	junction_2	23.861252586568	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCGATCTCCTCGACCT	NA	False	NA	NA	False	NA	NA	NA	90578418	90548633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
29594	chr15	+	1930	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	282	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	423.486422450591	18	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	100513511	100518642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100515175_100515860_100516052_100517248_100517396_100517525
29595	chr12	+	2556	6	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	91.7243697171041	7	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTGTGTGTGGTCTGAT	NA	False	NA	NA	False	NA	NA	NA	8258154	8335758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8258205_8270599_8270756_8288442_8288616_8318363_8318599_8325807_8325891_8333899
29596	chr17	+	2512	5	ISM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	-35	8	31	4	intron_retention	FALSE	canonical	3	263	junction_1	273.554382161939	30	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTTGCACACATGAACGT	NA	False	NA	NA	False	NA	NA	NA	48717072	48724286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248
29597	chrX	+	2951	16	NNC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	135.394140690553	1108	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCGACTACCTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	47345735	47371327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47355291_47355736_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
29598	chr2	+	1931	14	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-438	intron_retention	FALSE	canonical	3	800	junction_1	81.3307223042593	2210	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	164675725	164681501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680870_164681070
29599	chr15	-	2899	13	NNC	ENSMUSG00000022443.18	novel	7433	41	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	152.57830412247	9	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTTGGTGTCTGGGTGT	NA	False	NA	NA	False	NA	NA	NA	77726310	77644788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648036_77674943_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
29600	chr7	-	3218	4	NNC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-11	-5	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	156.043441244916	1	145	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACCTGGCGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	42342153	42309533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42312421_42314181_42314243_42314441_42314569_42342010
29601	chr9	+	2270	9	NNC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	2	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	381.991635216008	5	24	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799564	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20799614_20799702_20800401_20800606_20800736_20800929_20800981_20801066_20801229_20801934_20802012_20802200_20802662_20802746_20803044_20803127
29602	chr7	+	2536	2	ISM	ENSMUSG00000059070.17	ENSMUST00000211425.2	834	4	-1160	-41	3	-1	intron_retention	FALSE	canonical	3	8304	junction_1	0	41	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGATGGTCCTCTGTGTTC	5953	False	NA	NA	False	NA	NA	NA	45367525	45370250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45368764_45368952
29603	chr8	-	1835	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	1054	0	at_least_one_novel_splicesite	FALSE	canonical	3	231	junction_3	1920.37050823243	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	43758919	43748103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758716
29605	chr9	+	1647	13	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-21	0	combination_of_known_junctions	TRUE	canonical	3	8	junction_4	1708.90399208577	33	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108765760	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773703_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
29607	chr10	+	2272	1	NIC	ENSMUSG00000034902.18	novel	4208	17	NA	NA	816	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCCCTCTTTTTGAGATC	2024	False	NA	NA	False	NA	NA	NA	81153491	81155763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_81153500_81155800
29608	chr17	+	3705	25	NNC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	2	64	intron_retention	FALSE	canonical	0	0	junction_7	60.6895561214796	1	86	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTCCGTGTTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	66430552	66458448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66443283_66443490_66445081_66445235_66445907_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455095_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
29609	chrX	+	2378	11	NNC	ENSMUSG00000031256.12	novel	3661	14	NA	NA	1309	6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	248.78426397182	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGCTTTTTAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	132961391	132976618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261_132975352_132975411
29610	chr11	+	3215	11	NIC	ENSMUSG00000038290.16	novel	5848	19	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	44.4684157577038	30	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTCTGCTGGTCTATT	NA	False	NA	NA	False	NA	NA	NA	74816649	75055274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74816830_74880895_74881042_74929438_74929556_74932693_74932863_74944587_74944790_75030018_75030196_75033582_75033730_75046986_75047141_75050001_75050214_75050650_75050733_75053645
29611	chr9	+	2583	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	-32	7	-32	-7	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	320	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCATGGAAGTAGAATC	NA	False	NA	NA	False	NA	NA	NA	53678789	53725431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
29612	chr6	-	2353	10	NIC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_5	90.9144218414517	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120334343	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
29613	chr9	+	2545	12	ISM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	15556	5	-664	-5	3prime_fragment	FALSE	canonical	3	674	junction_1	57.9468265804418	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGACTCTTGAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	98461339	98470430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
29614	chr1	-	5424	11	ISM	ENSMUSG00000033364.14	ENSMUST00000191058.7	6011	20	6048	21035	6048	-21035	internal_fragment	FALSE	canonical	3	180	junction_6	19.0850727009357	7	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATGTAATCTCTAAGAAAC	5395	False	NA	NA	False	NA	NA	NA	74538896	74509695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788
29616	chr11	-	1029	2	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTATAGCTTTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	75656401	75650187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75650259_75655443
29617	chrX	-	3831	25	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	99	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	202.446387793301	1	172	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTCCAAATAAAAATGAAAAC	NA	False	NA	NA	False	NA	NA	NA	59224350	59101354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152954_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200958_59201078_59205586_59205656_59223941
29618	chr9	+	2318	13	NIC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	380.283474310064	1	72	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGCAGTGTCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	25163939	25219862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
29619	chr19	-	1123	4	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAGACACGAGATGTCAC	NA	False	NA	NA	False	NA	NA	NA	10607167	10604851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10605021_10605123_10605229_10605788_10605910_10606439
29620	chr11	+	1349	2	NNC	ENSMUSG00000020385.17	novel	3543	3	NA	NA	1398	658	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTGTGATGTTTGGAGC	NA	False	NA	NA	False	NA	NA	NA	51167132	51168694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_51168430_51168642
29621	chr2	-	1326	5	NIC	ENSMUSG00000058594.16	novel	4118	17	NA	NA	13	551	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	106.059829813177	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGAGGAACCTCCGAAGT	NA	False	NA	NA	False	NA	NA	NA	11782305	11768484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782214
29625	chr17	-	2876	18	NIC	ENSMUSG00000025733.18	novel	3189	19	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	133	junction_17	11.5985323018515	225	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAATGTGACTGCTGTTTT	6072	False	NA	NA	False	NA	NA	NA	26063440	26057435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059726_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
29627	chr19	+	2129	5	ISM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	10	8	10	-8	intron_retention	FALSE	canonical	3	441	junction_2	20.5243757517738	15	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACGTTTGCAGACTGC	NA	False	NA	NA	False	NA	NA	NA	6135022	6141799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080
29629	chr10	+	2856	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	68	2	-8	-2	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	1	143	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173670	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
29630	chr3	-	1840	9	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	6	44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	907.454647627087	3	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTGGGTCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	108352508	108333883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341655_108352312
29631	chr1	-	3040	5	FSM	ENSMUSG00000026107.12	ENSMUST00000186684.7	2677	5	0	-363	0	-6	multi-exon	FALSE	canonical	3	52	junction_2	4.09267638593623	13	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAGATATAGGAGTAAC	NA	False	NA	NA	False	NA	NA	NA	51517558	51508652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636
29632	chr9	+	1522	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1717.03936083791	14	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108765768	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776056_108776400_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
29633	chr9	+	1365	4	NIC	ENSMUSG00000040652.17	novel	1843	6	NA	NA	-1613	-264	intron_retention	FALSE	canonical	3	365	junction_3	8.28653526310404	1	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGGGGGAGCCTGTTC	6270	False	NA	NA	False	NA	NA	NA	65593474	65597318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65593636_65595079_65595256_65596102_65596189_65596376
29634	chr11	+	2001	10	NIC	ENSMUSG00000040746.16	novel	1957	10	NA	NA	4	-2	intron_retention	FALSE	canonical	2	6	junction_2	216.219767029569	145	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATGAAAAAAAAAGGTTAAG	9194	False	NA	NA	False	NA	NA	NA	70538116	70542234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70538779_70538854_70538936_70539233_70539419_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
29635	chr2	+	4846	7	ISM	ENSMUSG00000027281.17	ENSMUST00000135260.8	4906	8	648	34	88	-34	3prime_fragment	FALSE	canonical	2	8	junction_3	6.76798016808232	37	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAATAAACATGTGGG	NA	False	NA	NA	False	NA	NA	NA	136734175	136913836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_136734282_136747462_136747521_136842103_136842194_136885919_136885998_136888636_136888726_136908049_136908151_136909512
29636	chr17	+	3492	28	NNC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	-9	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_27	37.4535469025697	5	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCTACATGAACTTCATG	NA	False	NA	NA	False	NA	NA	NA	66430541	66459156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797_66458076_66458777
29639	chr1	-	2854	14	FSM	ENSMUSG00000026709.11	ENSMUST00000160591.8	2126	14	-53	-675	-2	675	multi-exon	FALSE	canonical	3	321	junction_2	32.3146512651852	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACATAGCAAGACCCTGAC	NA	False	NA	NA	False	NA	NA	NA	160898230	160872077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
29640	chr8	-	1780	7	NNC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	268.293785905592	39	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	65186611	65171172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180881_65180929_65180943_65186541
29641	chr6	-	1478	9	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2333.96231961337	15	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446854	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440179_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
29642	chr4	+	2855	10	NNC	ENSMUSG00000028683.15	novel	3754	10	NA	NA	18	979	intron_retention	FALSE	non_canonical	0	0	junction_9	208.727419862531	7	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATACTGGTTTCTATGTT	NA	False	NA	NA	False	NA	NA	NA	116876622	116945482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116923762_116925940_116926019_116927835_116927910_116944720
29643	chr11	+	2840	7	Antisense	novelGene_ENSMUSG00000020159.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_5	7.29725975966321	45	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGCAGCGCTTGTCCG	NA	False	NA	NA	False	NA	NA	NA	33484766	33525650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33484862_33490951_33491321_33505356_33505461_33517192_33517308_33522276_33522430_33522885_33523021_33523781
29644	chr13	-	4148	5	FSM	ENSMUSG00000069184.5	ENSMUST00000223163.3	4153	5	2	3	2	-3	multi-exon	FALSE	canonical	3	29	junction_1	7.88590514779375	84	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGTAGCTTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	74538953	74517447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74520947_74523086_74523183_74524554_74524682_74526730_74526986_74538782
29645	chr2	-	4282	10	FSM	ENSMUSG00000027438.15	ENSMUST00000136513.2	4311	10	22	7	0	-7	multi-exon	FALSE	canonical	3	13	junction_4	1.6629588385662	37	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGTAACCTTTTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	148574311	148535911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148551236_148551354_148554594_148554675_148574185
29646	chr12	-	2073	3	NIC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-256	-3	intron_retention	FALSE	canonical	3	1349	junction_1	299	3856	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105189308	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_105183961_105184481_105185089_105188791
29647	chr17	+	1393	2	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	4380	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	45	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTCCTGCAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	36163772	36170560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36164432_36169826
29648	chr5	-	4303	18	FSM	ENSMUSG00000036553.17	ENSMUST00000070203.14	4549	18	244	2	-20	-1	multi-exon	FALSE	canonical	3	19	junction_17	20.7093914138867	116	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGGTATCTTCTAGGTG	NA	False	NA	NA	False	NA	NA	NA	35886376	35854525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35886290
29650	chr3	+	1648	10	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	12	-16	at_least_one_novel_splicesite	FALSE	canonical	1	28	junction_3	811.16497538044	20	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTAAGTGTTCATCTC	NA	False	NA	NA	False	NA	NA	NA	79498683	79510941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498865_79500916_79501058_79502508_79502616_79505067_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
29651	chr2	+	1283	4	ISM	ENSMUSG00000005881.14	ENSMUST00000088650.11	1349	14	10	8409	10	-1363	5prime_fragment	FALSE	canonical	3	852	junction_3	59.1401348963253	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAGGTTTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	155850035	155851790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779
29653	chr17	-	3415	1	FSM	ENSMUSG00000118589.2	ENSMUST00000239282.2	67	1	-3103	-245	-3103	245	mono-exon	FALSE	NA	NA	NA	NA	NA	4	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGAAGCAGTGTGTGTG	9389	False	NA	NA	False	NA	NA	NA	35827665	35824250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35824200_35827700
29654	chr17	+	3267	27	NNC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	-11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	38.1565019236991	2	68	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGCTGTTCAGGACTC	NA	False	NA	NA	False	NA	NA	NA	66430596	66458386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455095_66455754_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
29655	chr13	+	3324	17	FSM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	4	0	4	0	multi-exon	FALSE	canonical	3	118	junction_13	19.2596363867546	187	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGCTATTGTGATCTT	5498	False	NA	NA	False	NA	NA	NA	51805736	51838080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
29656	chr10	+	1691	2	Intergenic	novelGene_3417	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	42	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGGTGGGTAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	26044466	26046856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_26044700_26045398
29657	chr16	+	1909	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-12	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	839.977833040849	5	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	1382	False	NA	NA	False	NA	NA	NA	20354256	20362657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
29658	chr6	-	2620	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	55	4	0	-4	multi-exon	TRUE	canonical	3	371	junction_3	47.1643108952333	336	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGGCTGTGATCAAATG	NA	False	NA	NA	False	NA	NA	NA	88423466	88234319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
29659	chr8	-	2708	11	Antisense	novelGene_ENSMUSG00000011306.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	58	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCATCTTTCCAGACTT	3449	False	NA	NA	False	NA	NA	NA	70524514	70501213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70501331_70505240_70505333_70509026_70509251_70511927_70512056_70512402_70513304_70517483_70517847_70522099_70522207_70522643_70522823_70522979_70523086_70523761_70523908_70524169
29660	chr9	+	1214	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1430	-154	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8185.08678939936	8	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAACCCTTGTGTGACT	NA	False	NA	NA	False	NA	NA	NA	64082104	64085794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64082992_64083399_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085577
29661	chrX	+	1819	6	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-1793	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1083.15347019709	12	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74147761	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74148067_74149259_74149383_74149883_74149988_74150777_74150857_74151784_74151911_74152301
29662	chr13	+	4210	3	FSM	ENSMUSG00000035840.8	ENSMUST00000224300.2	4250	3	32	8	32	-8	multi-exon	FALSE	canonical	3	66	junction_2	12	91	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAAATGGAAGTTGTTG	321	False	NA	NA	False	NA	NA	NA	81805813	81820982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_81806056_81813123_81813389_81817279
29664	chr4	-	3271	9	NIC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	38	-1100	intron_retention	FALSE	canonical	3	293	junction_8	56.2472221536317	23	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTGTTTTTTTTTCCC	-4	True	NA	NA	False	NA	NA	NA	58987081	58966538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_58966764_58968758_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
29665	chr7	+	3763	5	NNC	ENSMUSG00000047603.10	novel	1332	5	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.5111083689809	3	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAGTTGTTTCTCATCC	NA	False	NA	NA	False	NA	NA	NA	23833634	23842663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_23833913_23834682_23834741_23836470_23836598_23837566_23837928_23839724
29666	chr2	+	3831	13	Antisense	novelGene_ENSMUSG00000027086.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCATCTACACTAGAAGTC	NA	False	NA	NA	False	NA	NA	NA	69517158	69542878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_69517485_69520406_69520521_69521577_69521707_69524210_69524327_69524859_69524992_69527186_69527312_69530463_69530585_69532708_69533194_69534596_69535876_69537650_69538050_69538853_69538983_69541838_69541905_69542468
29667	chr2	+	2732	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	-3	intron_retention	FALSE	non_canonical	0	0	junction_3	113.556371845779	1	84	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTTGTTGTATGCTGT	NA	False	NA	NA	False	NA	NA	NA	130266273	130285651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279927_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
29668	chr9	-	3270	10	Antisense	novelGene_ENSMUSG00000032280.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGGGCTCACCCGGG	NA	False	NA	NA	False	NA	NA	NA	61325757	61316080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_61316201_61316556_61316688_61317215_61317416_61318543_61318622_61319546_61319794_61320133_61320383_61321222_61321370_61321989_61322143_61322842_61322917_61323886
29669	chr11	-	1074	2	ISM	ENSMUSG00000034566.11	ENSMUST00000141474.8	420	3	107	14	107	-14	intron_retention	FALSE	canonical	3	2984	junction_1	0	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGCTGGCTATCGTCT	NA	False	NA	NA	False	NA	NA	NA	115307737	115306528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_115306706_115306840
29671	chr6	-	2241	7	Antisense	novelGene_ENSMUSG00000007458.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	91	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAAGCAGCGAGAGCCTG	NA	False	NA	43	True	NA	NA	NA	122294634	122285949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122286109_122289170_122289371_122290215_122290397_122292030_122292125_122292261_122292394_122293008_122293136_122293286
29674	chr1	-	2072	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186948.7	641	4	-24	-1407	0	-10	multi-exon	FALSE	canonical	3	147	junction_3	1146.38165062465	489	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAGGTACGATCAGCAC	NA	False	NA	NA	False	NA	NA	NA	16727266	16711958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727135
29675	chr1	+	2645	14	NNC	ENSMUSG00000026199.18	novel	2739	13	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.0931978325378	9	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGAAAACTGTGTGTGTA	75	False	NA	NA	False	NA	NA	NA	75168834	75176022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75169159_75169212_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
29676	chr4	+	3283	13	FSM	ENSMUSG00000028759.14	ENSMUST00000030541.13	3311	13	4	24	-3	-2	multi-exon	FALSE	canonical	3	41	junction_1	22.3320895176027	128	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTGAACTACAGCTTAG	4569	False	NA	NA	False	NA	NA	NA	137943941	137970457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_137944052_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
29677	chr1	-	2120	15	NIC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	8	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	516.325365107179	1	66	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGATAGTGTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	128345088	128291447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
29678	chrX	+	2079	10	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-9	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	696.03199869681	6	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTTTGAATTTGCTTTT	NA	False	NA	-42	True	NA	NA	NA	74139682	74153379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148873_74153112
29679	chr16	-	2984	4	NIC	ENSMUSG00000046962.17	novel	3072	4	NA	NA	-4	-3	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	30.4448499567478	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTTAAGTTTGGGATGA	NA	False	NA	NA	False	NA	NA	NA	97763826	97750966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_97752070_97752669_97754294_97757957_97758101_97763712
29681	chr5	+	5042	11	FSM	ENSMUSG00000033623.14	ENSMUST00000046975.12	7708	11	40	2626	40	-2626	multi-exon	FALSE	canonical	3	114	junction_9	9.83666610188635	128	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAATCTCCCAGTCTGGC	NA	False	NA	NA	False	NA	NA	NA	108609137	108652216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222
29682	chr4	+	3240	25	FSM	ENSMUSG00000028582.15	ENSMUST00000030320.13	3303	25	51	12	51	6	multi-exon	FALSE	canonical	3	165	junction_8	22.4730934798829	1	93	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAACTATCAGTTTTATG	3584	False	NA	NA	False	NA	NA	NA	108477187	108491308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
29684	chr10	+	2828	14	FSM	ENSMUSG00000037455.17	ENSMUST00000119597.8	2837	14	6	3	6	-3	multi-exon	FALSE	canonical	3	72	junction_6	14.8148334428987	121	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATTCATTGTATTCATTC	NA	False	NA	NA	False	NA	NA	NA	23672889	23703863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
29685	chr9	+	3099	21	Antisense	novelGene_ENSMUSG00000036057.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	115	6	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCGTCACGCGGAGTGAC	NA	False	NA	NA	False	NA	NA	NA	110216801	110237280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_110216809_110216856_110217720_110217808_110217987_110218077_110218232_110218308_110218464_110218540_110218859_110219110_110219261_110219542_110219604_110219697_110219812_110219917_110219999_110220111_110220173_110220278_110220336_110220702_110220750_110220834_110220965_110221047_110221134_110221555_110221684_110221769_110221815_110222433_110222519_110222771_110222897_110227188_110227264_110237101
29687	chr17	+	1959	2	Genic_Genomic	ENSMUSG00000061062.6	novel	1444	1	NA	NA	-43	526	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAGAAAATATCTAATA	NA	False	NA	NA	False	NA	NA	NA	78798967	78800980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_78800000_78800053
29688	chr7	-	3309	7	FSM	ENSMUSG00000011382.9	ENSMUST00000011526.7	5323	7	26	1988	26	-1988	multi-exon	FALSE	canonical	2	18	junction_4	6.73300329224139	356	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGAACTGAGCGTGGT	NA	False	NA	NA	False	NA	NA	NA	45138203	45122398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
29689	chr10	+	1891	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	-106	-1	-87	1	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	625	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAGAGTTTCAAAATAT	9110	False	NA	NA	False	NA	NA	NA	127102149	127117820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
29690	chr2	+	2478	14	FSM	ENSMUSG00000027075.17	ENSMUST00000111625.2	2487	14	0	9	0	-1	multi-exon	FALSE	canonical	3	65	junction_5	11.2969598465759	30	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGTATCTGTGACT	733	False	NA	NA	False	NA	NA	NA	84670968	84693929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
29692	chr10	-	3289	2	ISM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	4679	9	-133	-8	intron_retention	FALSE	canonical	3	243	junction_1	0	2	98	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTAAGCGCCTGTCTG	9735	False	NA	NA	False	NA	NA	NA	75763657	75759064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_75759950_75761253
29693	chr8	+	2502	3	NIC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-9	2006	combination_of_known_splicesites	FALSE	canonical	3	52	junction_2	837	18	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTTTGCCTGCATGT	8818	False	NA	NA	False	NA	NA	NA	120637543	120670149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_120637679_120658587_120658657_120667851
29694	chr6	-	2985	19	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-9	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269.158112465838	1	128	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTGGTTTCAGTTCTT	7923	False	NA	NA	False	NA	NA	NA	124806380	124791986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797527_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
29697	chr13	+	1641	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4971	17133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCCGTGCCCGGGTCACC	NA	False	NA	NA	False	NA	NA	NA	97312927	97334836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97313100_97313306_97313409_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320313_97322074_97322181_97325472_97325602_97327696_97327789_97330622_97330778_97334534_97334593_97334745
29698	chr12	-	2436	24	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	-13	-2334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	712.980956962069	2	98	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCATGAAGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	13299177	13269307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287820_13289459_13289558_13290555_13290644_13292216_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
29699	chr7	+	1838	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	284	2370	-46	1082	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	5	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAATTACCAGCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	83541491	83548370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
29700	chr11	+	1971	9	FSM	ENSMUSG00000020521.8	ENSMUST00000020827.7	4452	9	0	2481	0	-2481	multi-exon	TRUE	canonical	3	265	junction_2	21.9146070008111	594	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTGGTGGACCTGTTA	NA	False	NA	NA	False	NA	NA	NA	86375482	86387370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
29701	chr19	-	1713	4	Antisense	novelGene_ENSMUSG00000011752.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	87	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCCCCGGTCGCGCCTGCG	9928	False	NA	NA	False	NA	NA	NA	41907099	41900423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41900624_41904041_41904317_41905079_41905262_41906043
29702	chr5	-	2816	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-155	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	90.7291451396836	1	88	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTAGTTTCTGTTCCTA	NA	False	NA	NA	False	NA	NA	NA	5607397	5587456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607270_5607307
29704	chr9	-	2215	12	FSM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	30	1160	-22	805	multi-exon	FALSE	canonical	3	149	junction_5	11.4912830779187	548	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTTAAGTCTTCCAAGT	NA	False	NA	NA	False	NA	NA	NA	53521652	53492981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384_53509433_53521512
29705	chr1	+	2404	5	ISM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	5355	12	5355	-12	intron_retention	FALSE	canonical	3	2246	junction_3	61.0614444637531	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTAAACCAGCTTGTCTC	NA	False	NA	36	True	NA	NA	NA	87147362	87155774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
29706	chr7	-	2294	8	NIC	ENSMUSG00000030751.19	novel	960	10	NA	NA	-3	-18	intron_retention	FALSE	canonical	3	33	junction_7	987.311604348715	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTTTCACCACCTATT	NA	False	NA	NA	False	NA	NA	NA	113875292	113863858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
29708	chr10	+	2097	2	ISM	ENSMUSG00000006728.13	ENSMUST00000123456.2	752	3	-697	-496	-2	-366	intron_retention	FALSE	canonical	3	4641	junction_1	0	4	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTGTGAACCACCGTG	NA	False	NA	NA	False	NA	NA	NA	126899469	126901680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_126900590_126900703
29709	chr4	+	2919	7	NIC	ENSMUSG00000028601.19	novel	893	9	NA	NA	-7	-3	intron_retention	FALSE	canonical	3	713	junction_3	43.8583578757294	3	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCTTGTGCTGGAATT	NA	False	NA	NA	False	NA	NA	NA	108022677	108036500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108031372_108034269_108034321_108035567_108035616_108036103
29710	chr1	-	3215	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	21	-698	8	698	multi-exon	FALSE	canonical	3	58	junction_3	10.1827059272082	175	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTTTTAAAACTCGATT	NA	False	NA	NA	False	NA	NA	NA	163231217	163211778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
29711	chrX	+	2080	9	NIC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	-16	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	229.269355780488	19	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGCTTCGTGTCACTC	NA	False	NA	NA	False	NA	NA	NA	73340732	73348296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346963_73347193_73347402
29712	chr14	-	1716	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1043.90932915651	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCGCTTGCAACTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731019_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
29713	chr2	+	260	1	NIC	ENSMUSG00000032966.15	novel	1658	5	NA	NA	8	-1816	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGGTGAGTCGGACCGGCC	NA	False	NA	NA	False	NA	NA	NA	151384521	151384781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_151384500_151384800
29714	chr19	-	1666	10	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	9184	0	583	0	3prime_fragment	FALSE	canonical	3	1599	junction_9	443.646756377689	8	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	NA	False	NA	NA	False	NA	NA	NA	5336299	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216
29715	chr2	+	2786	12	NNC	ENSMUSG00000017721.16	novel	2562	12	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_11	52.2968323867321	1	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGGTCGTTGCTTCCTTCC	5138	False	NA	NA	False	NA	NA	NA	164339465	164350218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164349492_164349779
29718	chr11	-	1713	9	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	19	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	372.905463053305	14	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAGTAAAAACGAAGTGA	NA	False	NA	NA	False	NA	NA	NA	115977779	115969423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115969977_115970022_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
29720	chr13	-	1094	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	-103	39	-103	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTTAAGTCTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97235848	97234754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97234800_97235800
29721	chr8	-	361	1	FSM	ENSMUSG00000059775.6	ENSMUST00000212102.2	351	1	-21	11	-6	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGTAAAGAGGCCGTT	NA	False	NA	NA	False	NA	NA	NA	108166217	108165856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165900_108166200
29722	chr3	+	1684	7	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_5	1877.26533523871	18	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGATTACATGTGTACT	NA	False	NA	NA	False	NA	NA	NA	121220193	121251599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245612_121248618_121248743_121250730
29723	chr5	-	638	5	Antisense	novelGene_ENSMUSG00000029614.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	158	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTTTTTTCTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	121347029	121343843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121343918_121344728_121344868_121345206_121345256_121346447_121346637_121346842
29724	chr12	-	2152	10	Intergenic	novelGene_4479	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGACAAACTGAAG	NA	False	NA	NA	False	NA	NA	NA	110538122	110452224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_110452385_110488922_110489124_110510507_110510618_110512026_110512120_110512202_110512334_110517493_110517560_110527734_110527896_110534154_110534290_110535387_110535490_110537129
29725	chr11	-	3012	18	NNC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	29	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	90.2715626169229	143	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTCGTCGAGTTTTTT	9045	False	NA	NA	False	NA	NA	NA	4799336	4715848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4716529_4718077_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
29726	chr9	-	3103	6	NIC	ENSMUSG00000040722.8	novel	1025	7	NA	NA	17	-2	combination_of_known_junctions	FALSE	canonical	3	62	junction_5	39.9669863762581	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCCCTCTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	57375261	57348611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375098
29727	chr3	+	2662	9	NNC	ENSMUSG00000027601.14	novel	1574	9	NA	NA	-13	-45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	381.285797499723	1	90	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATAAAGTAAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	19242415	19274936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201_19274243_19274346
29728	chr11	-	1902	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	50	0	-3	0	multi-exon	FALSE	canonical	3	5636	junction_4	454.292680988809	5	102	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120239318	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
29730	chr4	-	2219	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	10	-9	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	209.665829357099	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCACCAATTTTGACTT	NA	False	NA	NA	False	NA	NA	NA	147726943	147696404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697677_147698013_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
29731	chrX	+	2740	14	Antisense	novelGene_ENSMUSG00000031139.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGGATGTACACCCACG	NA	False	NA	NA	False	NA	NA	NA	59158177	59224527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_59158817_59160460_59160510_59166300_59166471_59168474_59168667_59170067_59170260_59174655_59174770_59175401_59175538_59178967_59179120_59180740_59180854_59181611_59181733_59198258_59198350_59200961_59201076_59205584_59205656_59223941
29732	chr9	+	1113	7	NNC	ENSMUSG00000001942.9	novel	4947	10	NA	NA	6510	4722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.372677996249965	90	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCTGTGGCTCCCCTTCA	4787	False	NA	NA	False	NA	NA	NA	37560485	37565673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_37560799_37561325_37561472_37562245_37562356_37562585_37562689_37563915_37564058_37564328_37564466_37565511
29733	chr7	+	3497	17	NNC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	27	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	97.6043512093595	1	130	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATGCATGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	130247685	130366449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130247738_130248029_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
29734	chr11	-	5005	31	FSM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_29	23.7014064280301	154	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	NA	False	NA	NA	False	NA	NA	NA	94283802	94234120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624_94242784_94242905_94243053_94245838_94245941_94247798_94247926_94248032_94248233_94249577_94249889_94250066_94250275_94250352_94250501_94250654_94250770_94251997_94252176_94252475_94252644_94254258_94254436_94254522_94254650_94254867_94254935_94255177_94255266_94255598_94255746_94255851_94256056_94258415_94258509_94259006_94259169_94259266_94259445_94262444_94262634_94263698_94263831_94264452_94264515_94264734_94264861_94265547_94265686_94265892_94266019_94266366_94266544_94283696
29737	chr6	+	2816	7	NNC	ENSMUSG00000004264.18	novel	2373	8	NA	NA	-6	-10	intron_retention	FALSE	non_canonical	0	0	junction_6	999.38954978638	24	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAAAAATTTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	124689292	124693903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124691923_124692022_124692127_124692544_124692623_124692916_124692999_124693568
29738	chr7	+	3311	14	ISM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	23866	2	2954	-2	3prime_fragment	FALSE	canonical	3	244	junction_1	32.4111895354149	2	95	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGAGTGTGGCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	130318360	130366512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
29739	chr8	+	2191	15	Fusion	ENSMUSG00000003808.19_ENSMUSG00000087685.2	novel	1826	13	NA	NA	-8	0	multi-exon	FALSE	canonical	2	5	junction_1	228.72592992577	1034	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	NA	False	NA	NA	NA	85573808	85595886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_85573950_85574698_85574925_85583619_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
29740	chr19	+	5536	14	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-223	1	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	13.2338994508254	68	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTGCCCCTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	25214115	25411861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_25214357_25252111_25252199_25295668_25295797_25355774_25355895_25386449_25389129_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
29741	chr4	+	2734	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	89	0	-2	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	318	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	NA	False	NA	NA	NA	129355462	129382291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
29742	chr4	-	2656	19	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	186.51081456746	1	100	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGGTGTGCTTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	120427458	120397066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418693_120419987_120420076_120422465_120422637_120424446_120424625_120427347
29743	chr13	+	2304	15	Intergenic	novelGene_1473	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	85	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGCGCTTGCGCACCGA	NA	False	NA	NA	False	NA	NA	NA	74470891	74498354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_74471288_74471957_74472072_74475043_74475179_74475368_74475481_74476418_74476534_74479416_74479592_74480219_74480414_74481138_74481312_74482418_74482541_74485508_74485661_74487166_74487333_74487692_74487822_74491452_74491614_74492967_74493074_74498300
29744	chr9	+	2932	22	FSM	ENSMUSG00000038379.16	ENSMUST00000070326.14	2871	22	-66	5	-37	-5	multi-exon	FALSE	canonical	3	211	junction_10	27.5493373131652	462	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACTGTACAGTGGTCAG	NA	False	NA	NA	False	NA	NA	NA	83716704	83754434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
29745	chr11	+	1946	11	NNC	ENSMUSG00000040463.17	novel	4014	24	NA	NA	-10	-213	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	862.284036730357	22	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCAATCTCTGACTCAACC	NA	False	NA	NA	False	NA	NA	NA	72332192	72342381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333296_72339109_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
29746	chr2	-	4507	4	NIC	ENSMUSG00000026849.19	novel	1401	5	NA	NA	58	5	intron_retention	FALSE	canonical	3	466	junction_1	30.5759527879163	5	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGTGTGTCTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	30857826	30850633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30851210_30853486_30853615_30853705_30857368_30857685
29747	chr2	+	1942	7	ISM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	3	1546	3	-1159	5prime_fragment	FALSE	canonical	3	390	junction_4	33.291640592397	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACAGAGTTTCTCTGTAT	994	False	NA	NA	False	NA	NA	NA	4923832	4941995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779
29748	chr2	+	993	2	FSM	ENSMUSG00000026664.8	ENSMUST00000128738.2	365	2	-241	-387	-241	0	multi-exon	FALSE	canonical	3	452	junction_1	0	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	6005	False	NA	NA	False	NA	NA	NA	4942052	4943541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_4942622_4943117
29749	chr11	-	1788	9	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	8	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.256170474084	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAAATCCCCCA	NA	False	NA	NA	False	NA	NA	NA	120534587	120530252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120530483_120530557_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
29750	chr7	-	2207	14	ISM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	6411	-41	3922	0	3prime_fragment	FALSE	canonical	3	352	junction_11	33.883196512684	3	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGGCTCAATGATTTC	NA	False	NA	NA	False	NA	NA	NA	139609768	139575867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739
29751	chr8	-	3071	16	ISM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	71	25519	71	-8851	5prime_fragment	FALSE	canonical	3	40	junction_13	7.13489079570715	14	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGAAAATCTCAAAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	26609181	26536967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_26538368_26549267_26549409_26551404_26551475_26557877_26557966_26558586_26558698_26560101_26560304_26561085_26561227_26562284_26562449_26563627_26563712_26564895_26564959_26572541_26572610_26578087_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
29752	chr8	-	1761	1	Intergenic	novelGene_1606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATATCCCAAAGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	26536965	26535204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_26535200_26537000
29753	chr10	-	3632	19	NNC	ENSMUSG00000037012.19	novel	3851	22	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	178.130803999009	18	141	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	-4	True	NA	NA	False	NA	NA	NA	62194209	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131656_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62188836_62188885_62194114
29754	chr4	+	2494	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	291	12	291	-12	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	1	90	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGACTTCTCAGATGATCA	5339	False	NA	NA	False	NA	NA	NA	89055649	89099306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
29755	chr2	+	3408	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	17	978	-7	-978	multi-exon	FALSE	canonical	3	42	junction_5	6.30352084156148	209	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATCAAAAGAAATTGTGGG	614	False	NA	NA	False	NA	NA	NA	144369654	144382937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
29756	chr13	+	2306	5	NNC	ENSMUSG00000021488.9	novel	9905	21	NA	NA	-262	5658	intron_retention	FALSE	canonical	3	21	junction_1	101.003403408004	6	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAATTTAGGAATGATGGT	NA	False	NA	NA	False	NA	NA	NA	55358285	55394318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55358348_55361016_55361964_55381707_55381844_55386502_55386676_55393330
29757	chr5	+	2181	4	FSM	ENSMUSG00000015804.15	ENSMUST00000156481.8	4560	4	91	2288	17	1351	multi-exon	FALSE	canonical	3	1736	junction_3	82.366390124991	100	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTCAATAATGAGGAGGA	7423	False	NA	NA	False	NA	NA	NA	45677661	45684330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45677827_45679777_45679845_45680763_45680877_45682494
29759	chr10	-	1855	13	NNC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	281.828947334293	30	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTCTGCCTCTCTGCTTCC	4802	False	NA	NA	False	NA	NA	NA	80895982	80879913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_80880434_80880509_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
29760	chr4	-	1992	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	21	12	11	2	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	803	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGAATTTTTTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	134262558	134252872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
29761	chr13	+	1221	3	Antisense	novelGene_ENSMUSG00000021427.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTAAATTATCTTACCCAA	NA	False	NA	NA	False	NA	NA	NA	38169980	38174390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_38170027_38171491_38171756_38173479
29762	chr9	+	2086	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	17	10	17	-10	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	2943	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGGAGATGGCTTCC	NA	False	NA	NA	False	NA	NA	NA	62248627	62286084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
29763	chr18	+	2273	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26779	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	494.935849275398	1	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATATAGACTAACAACAAC	6306	False	NA	NA	False	NA	NA	NA	77126124	77240840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220869_77221641_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240336
29764	chr19	-	2679	17	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	849.702806500602	1	119	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTACTGGCTAACTACT	3910	False	NA	NA	False	NA	NA	NA	5345439	5323963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329976_5333670_5333779_5333885_5333976_5334602_5334745_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337568_5337655_5337937_5338035_5338331_5338413_5345256
29765	chr5	-	2560	8	FSM	ENSMUSG00000029718.15	ENSMUST00000128755.8	2573	8	7	6	7	-1	multi-exon	FALSE	canonical	3	231	junction_7	121.856724166087	49	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGATCGTGTCTGAGG	4109	False	NA	NA	False	NA	NA	NA	137609663	137603370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137603580_137603718_137603890_137603984_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
29766	chr8	-	3023	9	Antisense	novelGene_ENSMUSG00000002342.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGACCATTTGCCCACCT	3371	False	NA	NA	False	NA	NA	NA	70635502	70629908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70629985_70630095_70630257_70631512_70632252_70632706_70633250_70633355_70633500_70633585_70633700_70633798_70633973_70634078_70634173_70634524
29768	chr18	+	6789	35	NIC	ENSMUSG00000024236.19	novel	7907	38	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	19.7669816616964	75	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTCATTGATCAGTTCA	1	True	NA	NA	False	NA	NA	NA	4920548	5119286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_4920875_4971089_4971198_5037107_5037166_5040147_5040240_5046588_5046647_5046763_5046916_5048884_5049495_5058124_5058160_5058712_5058775_5059229_5059370_5062161_5062406_5063193_5063771_5064470_5064691_5073880_5074005_5082782_5082931_5086534_5086625_5086709_5086797_5088636_5088815_5090786_5090960_5092844_5093001_5094537_5094675_5095171_5095320_5095435_5095582_5097426_5097603_5098907_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
29769	chr2	-	2970	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	64	14	-17	-14	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	316	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGTTTTAATAACTAACC	NA	False	NA	NA	False	NA	NA	NA	105734845	105531385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
29770	chr2	-	1428	9	NIC	ENSMUSG00000026766.17	novel	1351	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	256.06270594329	1750	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	NA	False	NA	NA	NA	50186729	50169892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_50170415_50170584_50170671_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
29774	chrX	-	2217	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_11	419.938484278962	1	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	100128978	100122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127848_100128877
29775	chr3	+	2240	9	NIC	ENSMUSG00000028199.19	novel	2505	9	NA	NA	-8	-5	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	57.5769865050265	682	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAAGCCCTTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	154302850	154328812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_154303165_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
29776	chr11	+	3227	22	FSM	ENSMUSG00000020694.18	ENSMUST00000106941.9	3699	22	472	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	59.3191529336175	179	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCCTGGATTCTCTGAT	NA	False	NA	NA	False	NA	NA	NA	105072824	105173003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
29777	chr4	-	3428	3	NIC	ENSMUSG00000043085.15	novel	2478	5	NA	NA	-37	2	intron_retention	FALSE	canonical	3	109	junction_2	2.5	4	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGCGTTGAGGATCACA	NA	False	NA	NA	False	NA	NA	NA	141345329	141341545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141344781_141344950_141345024_141345209
29778	chr16	-	1194	10	ISM	ENSMUSG00000025613.14	ENSMUST00000177376.8	1567	14	5412	-115	1072	115	3prime_fragment	FALSE	canonical	3	4287	junction_9	450.906740788923	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGTCTGTTTAATCACTCA	NA	False	NA	NA	False	NA	NA	NA	87287264	87280760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208
29779	chr1	+	2770	7	FSM	ENSMUSG00000026473.17	ENSMUST00000086199.12	2792	7	0	22	0	-22	multi-exon	FALSE	canonical	3	76	junction_3	27.7213315376845	365	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACCTCAAAAATT	NA	False	NA	NA	False	NA	NA	NA	153775689	153785447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_153775806_153778679_153778859_153780282_153780445_153782094_153782242_153782765_153782894_153783031_153783232_153783609
29781	chrX	-	4637	29	Antisense	novelGene_ENSMUSG00000031010.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	203	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCAGCACCGCCCAAGG	7416	False	NA	NA	False	NA	NA	NA	13006749	12937752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_12937971_12938453_12938563_12960160_12960415_12964686_12964835_12966670_12966752_12969565_12969679_12970829_12971041_12973303_12973420_12973902_12974153_12974226_12974366_12976308_12976466_12977328_12977440_12979800_12980005_12980746_12980882_12982860_12982995_12987669_12987755_12989401_12989750_12990806_12990915_12991645_12991844_12994443_12994688_12995215_12995358_12996460_12996584_12997963_12998088_12998303_12998561_13001188_13001300_13002675_13002808_13003844_13003994_13006327_13006439_13006624
29782	chr1	-	3676	23	NIC	ENSMUSG00000033364.14	novel	7111	24	NA	NA	-50	293	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	50.3069093064456	5	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTACACTAAAAACAGTTT	NA	False	NA	NA	False	NA	NA	NA	74545015	74477992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
29783	chr3	+	1699	10	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	16	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	816.076309673229	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATCTCTGGATGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	79498687	79510953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498832_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
29784	chr4	+	2308	17	NNC	ENSMUSG00000029062.15	novel	3170	19	NA	NA	3812	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	160.165039392965	1	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAAGTGTCTAACTTGC	7815	False	NA	-43	True	NA	NA	NA	155713178	155734388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726149_155726941_155727033_155731939_155732062_155732318_155732425_155732681_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
29785	chr17	+	1539	9	NNC	ENSMUSG00000019432.16	novel	2848	10	NA	NA	469	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	787.834998191246	2	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAAACAACCGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35462111	35472651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470423_35471935_35472085_35472182_35472331_35472448
29786	chr9	-	2157	16	NNC	ENSMUSG00000032254.11	novel	1829	16	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	68.9452600900808	5	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGGCCATTCACTCGG	NA	False	NA	NA	False	NA	NA	NA	61854019	61824554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824874_61832804_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
29787	chr11	-	3099	16	FSM	ENSMUSG00000076435.4	ENSMUST00000103164.4	3154	16	48	7	48	-7	multi-exon	FALSE	canonical	3	47	junction_6	8.37615663654877	108	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGAAGCCTGATTGGACT	7333	False	NA	NA	False	NA	NA	NA	94492649	94447934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94449184_94449465_94449535_94449690_94449802_94450288_94450431_94452065_94452218_94453636_94453745_94460135_94460213_94460766_94460859_94461128_94461287_94461439_94461536_94462096_94462263_94462387_94462507_94463051_94463106_94463347_94463477_94463858_94464055_94492468
29788	chr7	-	2786	11	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	-14	548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	335.83263688927	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTAAGTCCTGACAT	6269	False	NA	NA	False	NA	NA	NA	132714442	132588743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592774_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132714349
29789	ERCC-00043	+	982	1	FSM	ERCC-00043A	DQ516787	1007	1	0	25	0	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	233	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGGATTTTATAAACAAGAT	NA	False	NA	NA	False	NA	NA	NA	0	982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00043_+_0_1000
29790	chr15	-	1710	15	NIC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	-1	0	intron_retention	FALSE	canonical	1	6	junction_1	127.653648916248	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	NA	False	NA	NA	NA	102259182	102246690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102246941_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
29792	chr12	+	2537	10	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	7	-807	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	168.304911425295	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTGGGATGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	59113756	59119977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211_59119410_59119463
29793	chr4	+	2676	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181869	2511	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	139.258608351513	1	148	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATCTGCTCAACAACTC	NA	False	NA	NA	False	NA	NA	NA	147395004	147600454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147591995_147592098_147595209_147595337_147596801_147597207_147597965_147598527_147599115
29794	chr8	+	3930	2	FSM	ENSMUSG00000047710.9	ENSMUST00000128557.3	3977	2	45	2	45	-2	multi-exon	FALSE	canonical	2	6	junction_1	0	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTCATGTGTACTTAAT	NA	False	NA	NA	False	NA	NA	NA	13919748	13931637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13919839_13927797
29795	chr2	+	2932	9	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	1283	-34	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	1027.57554466813	2	145	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCCAAGTTGACAATAAAG	NA	False	NA	NA	False	NA	NA	NA	162911414	162926574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162911532_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
29797	chr3	+	2109	9	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1123.46678160727	1	74	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACGATCAGACCGGCTTG	NA	False	NA	NA	False	NA	NA	NA	89986838	90008199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90007989_90008108
29798	chr7	+	1956	7	NIC	ENSMUSG00000025510.15	novel	1865	8	NA	NA	4	-4	intron_retention	FALSE	canonical	3	98	junction_1	70.2244417722364	65	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATGTATAAGCACTCG	NA	False	NA	NA	False	NA	NA	NA	141047309	141051372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141050139_141050222_141050382_141050463
29799	chr5	-	2648	14	NIC	ENSMUSG00000029703.11	novel	2473	15	NA	NA	-1	1	intron_retention	FALSE	canonical	3	342	junction_8	20.0168568015315	67	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGGAGGCCAGTGGGAA	6695	False	NA	NA	False	NA	NA	NA	136164917	136151927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162905_136163352_136163588_136164725
29800	chr15	+	1300	12	NNC	ENSMUSG00000046434.17	novel	1283	11	NA	NA	-367	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5575.54850135026	19	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	103148491	103155119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148545_103148894_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
29802	chr10	-	2224	10	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	49	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	329.318488194433	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAACTTAAGTTTGTAG	5320	False	NA	NA	False	NA	NA	NA	62322462	62291057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292279_62292527_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
29803	chr15	-	1577	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	158	8	31	-8	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	20	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTTTGTTTCTGGA	189	False	NA	NA	False	NA	NA	NA	98832288	98829313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
29804	chr16	-	2895	5	NNC	ENSMUSG00000065979.13	novel	2663	4	NA	NA	-4	33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	45.6364711606846	261	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCTGTGCTGTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	11727313	11621551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11623448_11646038_11646462_11703436_11703610_11705441_11705661_11727129
29805	chr6	-	3216	3	Genic_Genomic	ENSMUSG00000107577.2	novel	3662	1	NA	NA	2847	5448	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCCTGGCCTCTGGGC	NA	False	NA	NA	False	NA	NA	NA	116238209	116231946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_116233788_116235600_116236215_116237448
29806	chr17	+	758	3	NNC	ENSMUSG00000046711.17	novel	1595	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1938	100	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775626	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778601_27782040
29807	chr10	+	2453	6	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-8	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	44.1832547465666	319	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCTTTTCTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	76869037	76886260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_76869285_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
29808	chr14	-	1738	14	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	intron_retention	FALSE	non_canonical	0	0	junction_8	330.059112510894	3	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741018	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736918_30737309_30737342_30738278_30738412_30738783_30738865_30739013_30739285_30739760_30739824_30740885
29809	chr1	-	1561	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	-19	359	-19	-359	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGTGGCAGGAGACTGC	NA	False	NA	NA	False	NA	NA	NA	135186195	135181675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
29810	chr5	+	2372	11	NNC	ENSMUSG00000029146.15	novel	2018	15	NA	NA	-3	1	intron_retention	FALSE	canonical	1	3	junction_1	120.954371562172	3	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTACCTTTGGTTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	31350646	31356239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31350720_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579
29811	chr10	+	2858	7	FSM	ENSMUSG00000019826.12	ENSMUST00000080771.10	2844	7	-8	-6	-8	6	multi-exon	FALSE	canonical	3	58	junction_6	14.3807355707403	131	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTGATCTTTATCAAAAA	NA	False	NA	NA	False	NA	NA	NA	41326370	41341576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41340272
29812	chr5	+	3274	4	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	125	6	49	-6	intron_retention	FALSE	canonical	3	504	junction_3	4.18993502999218	9	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACTGTGTTTGAGGTT	8164	False	NA	NA	False	NA	NA	NA	122510638	122520959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043
29813	chr11	+	2339	13	NNC	ENSMUSG00000020476.15	novel	2001	13	NA	NA	10	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	119.540788018149	339	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGCATTCGTGCATT	NA	False	NA	NA	False	NA	NA	NA	5738497	5750976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747286_5747336_5747626_5747721_5748015_5748113_5748215_5748326_5749233_5749340_5749859
29814	chr13	-	4267	11	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	5	-330	intron_retention	FALSE	canonical	1	2	junction_9	33.2031624999788	6	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTCCAAAACCACTGAC	NA	False	NA	NA	False	NA	NA	NA	74210413	74184948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206550_74207560_74207689_74210302
29815	chr13	+	1845	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	54	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	89.0181005314213	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATATTGCGAACTCAAG	NA	False	NA	NA	False	NA	NA	NA	97619262	97633510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629697_97631805
29816	chr2	-	2074	1	NIC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	54	1095	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCAGGCAGATTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	152185836	152183762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152183800_152185800
29817	chr10	-	3301	23	FSM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	-21	2	-21	-2	multi-exon	FALSE	canonical	3	326	junction_19	28.6394298502739	511	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGTTTTGCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	41179277	41064169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
29818	chr9	+	1917	15	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	6596	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	264.503038059787	5	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	98452379	98470435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463290_98469353_98469454_98469604_98469674_98469813_98469883_98470097
29819	chr15	-	1178	2	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1828	6	1701	-6	3prime_fragment	FALSE	canonical	3	3388	junction_1	0	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTTTGTTTCTGGATA	1859	False	NA	NA	False	NA	NA	NA	98830618	98829311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572
29820	chr18	+	1792	3	ISM	ENSMUSG00000037058.17	ENSMUST00000235476.2	1569	7	11286	-458	-115	458	3prime_fragment	FALSE	canonical	3	2803	junction_1	137	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGGTTTGGCTTGGTTT	3230	False	NA	NA	False	NA	NA	NA	35743922	35750698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_35744088_35746375_35746556_35749251
29821	chr8	-	2850	1	NIC	ENSMUSG00000003848.15	novel	2137	6	NA	NA	1294	1715	mono-exon	FALSE	NA	NA	NA	NA	NA	2	104	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTGGGTCCTTAATTT	NA	False	NA	NA	False	NA	NA	NA	108144004	108141154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_108141200_108144000
29823	chr3	-	1848	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	14	1708	14	39	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	2	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTCTCTGCTGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	108352500	108333888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
29824	chr10	+	4994	36	Intergenic	novelGene_3485	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	188	40	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTCCTCGGTGAGCCG	NA	False	NA	NA	False	NA	NA	NA	76888012	77002319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_76889249_76889991_76890104_76890616_76890816_76891412_76891661_76893201_76893239_76894535_76894665_76894938_76895013_76895091_76895236_76895727_76895857_76896201_76896246_76899811_76899873_76900367_76900413_76901067_76901140_76902784_76902858_76903211_76903268_76904201_76904298_76905268_76905335_76905655_76905683_76906777_76906886_76907396_76907515_76909523_76909636_76910182_76910318_76912965_76913055_76913516_76913676_76913831_76913890_76914112_76914188_76914289_76914351_76915088_76915124_76916513_76916698_76916981_76917060_76921100_76921230_76923208_76923263_76924702_76924790_76931823_76932370_77002123_77002193_77002270
29825	chr14	-	1827	13	NNC	ENSMUSG00000021814.18	novel	2727	13	NA	NA	57	361	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	265.643349039438	473	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8260	False	NA	NA	False	NA	NA	NA	20529919	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529796
29826	chr14	+	1934	10	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	503.703935185132	4	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9014	False	NA	NA	False	NA	NA	NA	55777845	55786329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785959
29827	chr3	+	2081	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	-40	8	-40	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	121220105	121251848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
29828	chr13	-	2414	20	NNC	ENSMUSG00000021556.13	novel	3954	10	NA	NA	40985	48474	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAAGGGAACATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	59782601	59733965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59734132_59745852_59745967_59747540_59747616_59748715_59748884_59755057_59755125_59755199_59755244_59755956_59756010_59757292_59757403_59760447_59760627_59764554_59764618_59765733_59765841_59770679_59770745_59772316_59772416_59773230_59773419_59775695_59775827_59776729_59776798_59777811_59777953_59778392_59778516_59780759_59780841_59782229
29829	chr8	+	2452	10	NIC	ENSMUSG00000003808.19	novel	1708	13	NA	NA	0	-7	intron_retention	FALSE	canonical	3	23	junction_2	200.460272841414	5	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGGACTCTGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	85583648	85595878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594278_85594378_85594548_85594637
29830	chr4	-	3194	6	Antisense	novelGene_ENSMUSG00000028899.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.4	3	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGCGGCCCTCCCCAAGCA	7449	False	NA	NA	False	NA	NA	NA	132022523	132001723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_132001797_132010102_132010360_132012357_132012431_132016623_132016737_132019170_132019260_132019934
29831	chrX	+	1254	8	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	41	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	818.20507882829	1	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52077054	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
29833	chr10	+	2982	6	FSM	ENSMUSG00000038280.13	ENSMUST00000040718.6	3006	6	24	0	24	0	multi-exon	FALSE	canonical	3	210	junction_2	7.54718490564528	142	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATGTTGTAATTGAAT	NA	False	NA	NA	False	NA	NA	NA	42554935	42578455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_42555394_42559155_42559271_42568906_42569005_42572245_42572414_42574103_42574270_42576478
29834	chr1	-	2849	20	NNC	ENSMUSG00000026198.16	novel	2966	19	NA	NA	-36	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	36.0815481422775	2	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTGGTTTGGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	75156966	75148359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155629_75155676_75155713_75156213
29836	chr4	+	2072	14	NNC	ENSMUSG00000028330.9	novel	3010	23	NA	NA	135	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	134.153184543182	6	22	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	-6	True	NA	NA	False	NA	NA	NA	46138747	46172403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46138887_46144784_46144874_46145373_46145504_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46168480_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
29837	chr7	-	3636	5	NIC	ENSMUSG00000062040.15	novel	3845	5	NA	NA	48	-105	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	15.9902313929474	48	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAAGTGTACCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	29605909	29592862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605634
29839	chr5	-	2112	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	142	742	-140	-742	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGAAGCCTGTTAATGT	NA	False	NA	NA	False	NA	NA	NA	9047182	9016774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
29841	chr1	-	1981	17	NIC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	5	1558	combination_of_known_junctions	FALSE	canonical	3	163	junction_16	206.101916536455	1	25	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTGCTACTTATGTCA	NA	False	NA	NA	False	NA	NA	NA	63215844	63187666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
29842	chr17	+	2908	9	NIC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	-2	-294	intron_retention	FALSE	canonical	3	17	junction_3	123.177146317813	6	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTTCTTAATCTTAGAT	NA	False	NA	NA	False	NA	NA	NA	27136092	27151263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_27136260_27139770_27139906_27139993_27140094_27141649_27141698_27141878_27142277_27142982_27144707_27144799_27144874_27145193_27145270_27151077
29843	chr11	-	1007	8	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGAGCGGCCTCCGCCGG	NA	False	NA	NA	False	NA	NA	NA	48696915	48691187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691309_48692491_48692662_48693099_48693246_48694228_48694325_48694682_48694794_48694980_48695123_48696370_48696481_48696804
29844	chr19	-	2949	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	5	1550	5	-1550	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	206	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACCTAGCACACTTTGGA	4340	False	NA	NA	False	NA	NA	NA	5925297	5901279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
29845	chr11	+	2615	12	FSM	ENSMUSG00000006127.10	ENSMUST00000150857.8	2571	12	-44	0	-18	0	multi-exon	FALSE	canonical	0	0	junction_1	41.3619380270723	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCGTGTGACTCCTTT	5462	False	NA	NA	False	NA	NA	NA	75521836	75539691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75522024_75523929_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
29846	chr1	-	2177	17	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	3	27	junction_16	96.678510409501	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGAGTCTTCCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	160898233	160869067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160898112
29847	chr11	-	1841	12	NNC	ENSMUSG00000018861.9	novel	1948	12	NA	NA	-254	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_11	32.3513766360558	20	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	NA	False	NA	NA	NA	115168130	115158849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167995
29848	chr2	+	2278	7	NNC	ENSMUSG00000018326.10	novel	3013	6	NA	NA	243	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	549.444391079651	44	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	NA	False	NA	NA	NA	163837122	163860508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588_163859785_163860276
29849	chr11	+	635	1	Intergenic	novelGene_2243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTACCATTTTAATTAGAT	NA	False	NA	NA	False	NA	NA	NA	31052913	31053548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_31052900_31053500
29850	chr9	-	1761	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	160	11	77	-11	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	2	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAACAAAATGTGAGTAG	NA	False	NA	NA	False	NA	NA	NA	110775066	110768681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
29851	chr14	+	2927	9	NNC	ENSMUSG00000090440.3	novel	1757	5	NA	NA	-308473	329	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	7.94905654779232	27	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTTTTTATTTGGATTT	NA	False	NA	NA	False	NA	NA	NA	40986694	41303591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40986825_40986925_40987404_41285280_41285338_41292649_41292723_41293748_41294008_41296051_41296215_41297159_41297292_41297971_41298154_41302138
29852	chr10	-	2092	8	NNC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	-54	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	781.523603518885	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCACTGTGGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	69188822	69174134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181424_69181491_69182062_69185925_69185989_69188665
29854	chr5	-	1576	15	NNC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	9	-16888	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	56.5050115169497	1	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGGTGCTGGAGATG	NA	False	NA	NA	False	NA	NA	NA	140307296	140091313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296480_140300757_140300908_140307261
29855	chr17	+	2851	4	NNC	ENSMUSG00000036036.16	novel	815	3	NA	NA	8	-25	intron_retention	FALSE	non_canonical	0	0	junction_1	1475.04508405676	1	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAAGGGGAGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	37313381	37321499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313443_37314330_37315796_37316950_37317087_37320310
29856	chr14	+	1649	12	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	886.73649034298	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	NA	False	NA	NA	NA	21881400	21895947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881513_21881645_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213_21895621_21895728
29858	chr16	-	1746	7	NIC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	27	-12	intron_retention	FALSE	canonical	0	0	junction_6	1011.6853924681	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAAAGTCGCTGT	1077	False	NA	NA	False	NA	NA	NA	11021072	11010845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_11011602_11012323_11012576_11014137_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11021014
29859	chr2	-	2352	14	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	31	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	161.171267646541	1	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	103315439	103284346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293692_103293733_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
29861	chr9	-	310	1	Intergenic	novelGene_1094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGCACTCCACCAGCAG	NA	False	NA	NA	False	NA	NA	NA	62780695	62780385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_62780400_62780700
29862	chrX	-	2000	5	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	-14	-9	intron_retention	FALSE	canonical	3	11043	junction_4	2414.22295987757	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACTACTTTTGGTTTGC	NA	False	NA	NA	False	NA	NA	NA	101232956	101228555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101229267_101230001_101231059_101231427_101231978_101232903
29863	chr5	+	2108	15	NNC	ENSMUSG00000037313.17	novel	2899	16	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	258.097671750958	1	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815832	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33815896_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
29864	chr12	-	1175	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2750.28261998579	101	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	111638729	111635794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111637932_111638371_111638408_111638663
29866	chr4	-	1708	12	NIC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	3	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	305.162062349697	2	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2495	False	NA	NA	False	NA	NA	NA	129229160	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
29867	chr8	+	1697	7	FSM	ENSMUSG00000091490.4	ENSMUST00000163869.2	1467	7	-227	-3	-227	3	multi-exon	FALSE	canonical	3	435	junction_2	46.4351399504968	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	43635928	43646921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
29868	chr2	+	2188	7	NNC	ENSMUSG00000026817.15	novel	2034	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	134.330024773152	537	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	NA	False	NA	NA	NA	32519535	32525070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32522805_32522974_32523305_32523498_32523652
29869	chr4	-	1899	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	58	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	708.282207845441	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCTGAGTCTTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	137523637	137469044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469562_137469868_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137476929_137479847_137480039_137481178_137481313_137482980_137483061_137485882_137486044_137523552
29870	chr16	-	2816	23	NIC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-9	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_20	76.039191721677	2	80	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTAGAACTCTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	13486022	13355833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13483765_13483846_13485397_13485476_13485874
29871	chr5	+	1934	12	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	26	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	226.144691486675	11	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTTATTTTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	64250318	64285698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261182_64265067_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
29872	chr14	+	1799	9	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-2203	1276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3699.57362196983	4	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGGGTGCACGGTTCTGT	148	False	NA	NA	False	NA	NA	NA	63370763	63380588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63370916_63371413_63371500_63373070_63373172_63373868_63373995_63375531_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
29874	chr3	+	2068	9	NIC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	35	-17	intron_retention	FALSE	canonical	3	1030	junction_1	87.5457023502582	40	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTATTTTATGTCTGA	NA	False	NA	NA	False	NA	NA	NA	97066127	97083873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
29875	chr7	+	3849	9	Fusion	ENSMUSG00000057215.7_ENSMUSG00000062542.12	novel	1294	6	NA	NA	-11	1	multi-exon	FALSE	canonical	3	15	junction_3	64.1374256967022	96	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTCGTTGTCTCATTAA	NA	False	NA	NA	False	NA	NA	NA	106842217	107147861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_106842336_106883988_106884145_106884819_106884938_107024253_107024606_107035481_107036029_107101299_107101421_107103368_107103541_107105695_107105826_107145726
29876	chr4	+	2584	14	NNC	ENSMUSG00000028708.17	novel	2552	14	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	77.5515098911074	19	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	115696417	115736445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115696439_115702818_115702863_115705416_115705560_115712098_115712205_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115735146
29877	chr7	+	3187	11	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	-4	-2	intron_retention	FALSE	canonical	2	17	junction_2	28.6462912084619	72	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATGTGTTGCCGATCTG	NA	False	NA	NA	False	NA	NA	NA	101714722	101732967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_101715012_101719103_101719199_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
29878	chr19	-	4780	4	NIC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	2	1919	intron_retention	FALSE	canonical	3	1256	junction_3	163.831213957129	3	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGATGTGTTCTTAAAGT	NA	False	NA	NA	False	NA	NA	NA	27407223	27398000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_27400148_27400905_27403415_27404436_27404529_27407191
29879	chr10	-	2018	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	48	223	5	-223	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	2	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCGCCCTCCTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	127358265	127353230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
29880	chr1	-	2254	18	Antisense	novelGene_ENSMUSG00000025995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATCTTCACGCAGGCGC	NA	False	NA	NA	False	NA	NA	NA	45862794	45834687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_45834695_45843033_45843159_45844533_45844608_45845832_45845951_45846828_45846918_45851198_45851359_45852202_45852268_45852352_45852466_45853700_45853876_45855635_45855794_45856420_45856602_45857327_45857423_45857979_45858078_45858648_45858817_45859288_45859349_45861605_45861753_45862040_45862131_45862463
29881	chr16	-	2798	26	Antisense	novelGene_ENSMUSG00000038084.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGCCGGCTGGGCTCCCG	NA	False	NA	NA	False	NA	NA	NA	29448471	29398195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_29398387_29404832_29405155_29405783_29405884_29407068_29407176_29408496_29408565_29421027_29421072_29424330_29424433_29426498_29426587_29427169_29427283_29429483_29429567_29429671_29429745_29430212_29430287_29430368_29430467_29430722_29430855_29432780_29432855_29432942_29433017_29433866_29433981_29434722_29434789_29435431_29435507_29436936_29437104_29439196_29439351_29439587_29439698_29440282_29440361_29444279_29444422_29447513_29447627_29448435
29882	chr4	+	2135	19	Antisense	novelGene_ENSMUSG00000040044.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATGCGCACTCCACACT	NA	False	NA	NA	False	NA	NA	NA	34570807	34614903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_34571019_34571728_34571807_34572462_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579881_34584808_34584884_34585572_34585689_34586442_34586504_34586944_34587083_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599811_34605540_34605675_34607118_34607229_34611021_34611079_34614866
29884	chr2	-	3035	10	NNC	ENSMUSG00000048327.7	novel	3137	9	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	102.060983948052	2	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	129139107	129110129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129127522_129127598_129128021_129132877_129132930_129138233_129138301_129139024
29885	chr2	-	5148	8	FSM	ENSMUSG00000034723.12	ENSMUST00000038228.11	5488	8	13	327	0	-327	multi-exon	FALSE	canonical	3	29	junction_5	5.36808406515884	22	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTAAAAAAAGAATTTTCT	2705	False	NA	NA	False	NA	NA	NA	134486052	134436431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_134440786_134441929_134441994_134442807_134442910_134451450_134451497_134462474_134462604_134463307_134463354_134481641_134481758_134485761
29887	chr5	-	2951	7	NNC	ENSMUSG00000047881.15	novel	3241	7	NA	NA	-4829	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	196.667867227974	3	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGTGCTTGAATGAGCG	NA	False	NA	NA	False	NA	NA	NA	64131069	64066420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64130926
29888	chrX	+	1952	10	NNC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_7	204.512971607073	16	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGGGCTTCGTGTCACT	NA	False	NA	NA	False	NA	NA	NA	73340755	73348295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346055_73346827_73346876_73346963_73347193_73347402
29889	chr10	+	2450	12	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	7137	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	387.04481129504	1	97	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTAACCAACAGATCTGGC	1280	False	NA	NA	False	NA	NA	NA	60127419	60138365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60134999_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60137387
29890	chr19	-	2630	10	NNC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	27	-1868	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	128.118675694562	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCAGTCAGCTAACCC	NA	False	NA	NA	False	NA	NA	NA	43741412	43723560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43723725_43723997_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
29891	chr3	+	3058	8	NIC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	-1	36	intron_retention	FALSE	canonical	3	1845	junction_1	144.401650733965	12	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGCAACATTTTAACATAA	4941	False	NA	NA	False	NA	NA	NA	138148870	138161040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_138148955_138151050_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
29892	chr1	+	1854	14	NIC	ENSMUSG00000026427.17	novel	2504	16	NA	NA	7	-11	combination_of_known_junctions	TRUE	canonical	2	4	junction_4	234.615435056741	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTACTGAAAGCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	131080924	131101204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_131081163_131081965_131082157_131083369_131083461_131085928_131086037_131088199_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
29893	chr15	+	1814	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	88	0	-33	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	1036	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	78	False	NA	NA	False	NA	NA	NA	34238261	34284448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
29894	chr1	-	3477	13	ISM	ENSMUSG00000026479.14	ENSMUST00000185356.7	4916	23	44182	5	10221	-5	3prime_fragment	FALSE	canonical	3	81	junction_12	15.2014253717648	153	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGCTGAGTTTCTGATT	NA	False	NA	NA	False	NA	NA	NA	153017611	152998506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271
29895	chr17	-	2021	10	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	335.722475039896	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCTTGTCAGTGAG	NA	False	NA	NA	False	NA	NA	NA	13179601	13161926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13162613_13162658_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
29896	chr1	-	2512	9	FSM	ENSMUSG00000033159.15	ENSMUST00000168720.8	3669	9	-64	1221	-5	-4	multi-exon	TRUE	canonical	3	100	junction_8	23.1405353222435	309	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCATGGCCTGGCCTTTTC	9303	False	NA	NA	False	NA	NA	NA	75119346	75112418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701
29897	chr4	+	2206	7	NIC	ENSMUSG00000028419.6	novel	1519	8	NA	NA	88	-2	intron_retention	FALSE	canonical	3	527	junction_5	40.8030499949316	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTAATTGTAGTATCGCT	-4	True	NA	NA	False	NA	NA	NA	40948494	40965301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
29901	chr11	+	1764	7	NIC	ENSMUSG00000020708.13	novel	1394	10	NA	NA	5	0	intron_retention	FALSE	canonical	3	2411	junction_3	124.479471756948	12	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4541	False	NA	NA	False	NA	NA	NA	106146984	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106153518_106153622_106153710_106153834
29902	chr15	+	1588	11	ISM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	50	4462	-19	-4462	5prime_fragment	FALSE	canonical	3	1651	junction_4	113.648977118142	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTCTATATTGATAAGGT	NA	False	NA	NA	False	NA	NA	NA	78959428	78974143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663
29903	chr7	-	3138	20	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	36	-3	intron_retention	FALSE	non_canonical	0	0	junction_5	65.4325475780095	1	69	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697650	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683052_140683903_140684298_140684395_140684494_140684585_140684640_140686675_140687233_140687308_140687414_140687513_140687600_140687714_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140690288_140690426_140690543_140690670_140691067_140691143_140697626
29904	chr11	+	2095	13	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	330.561349155577	59	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	98573391	98586804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98573764_98576307_98576399_98576438_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
29905	chr6	+	4094	19	NNC	ENSMUSG00000056832.15	novel	4195	18	NA	NA	8	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	9.30037169043512	32	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTTGTCATGTGTGTT	3493	False	NA	NA	False	NA	NA	NA	38358411	38404570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_38358529_38359010_38359149_38362367_38362461_38364531_38364647_38366916_38366967_38368353_38368500_38371956_38372129_38375217_38375293_38377981_38378085_38380401_38380458_38381416_38381471_38382871_38382936_38386349_38386439_38387708_38387793_38388958_38389029_38398473_38398581_38400284_38400464_38402062_38402359_38402484
29906	chr17	+	2107	15	NNC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-911	7153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	60	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCGCGCCCGCCCGAG	NA	False	NA	NA	False	NA	NA	NA	45896134	45906456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45896708_45897018_45897232_45898153_45898240_45898487_45898597_45899214_45899320_45899934_45900000_45900132_45900229_45900336_45900475_45900606_45900746_45900847_45901054_45901184_45901262_45903101_45903188_45904257_45904359_45905215_45905277_45906404
29907	chr1	+	3805	10	NIC	ENSMUSG00000026305.16	novel	2760	23	NA	NA	7	2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	32.7395257022742	92	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTACTGGTTGTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	90981182	91045039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91038076_91038170_91039877_91040020_91042317
29908	chr2	+	1743	14	NNC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	-26	-435	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	279.898100646578	2	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	164675923	164681504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680048_164680593_164680651_164680764_164680870_164681070
29909	chr11	+	2439	9	NNC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	11	752	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	81.7370020247868	7	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	105017315	105031972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105017433_105017601_105017694_105019681_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
29910	chr2	+	3442	6	FSM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	81	4	47	-4	multi-exon	FALSE	canonical	3	865	junction_2	49.2097551304617	541	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGACTTGTTCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	162773528	162779037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_162773698_162773913_162774063_162775345_162775471_162775573_162775783_162776147_162776232_162776331
29911	chr10	+	2468	6	NNC	ENSMUSG00000061759.16	novel	2429	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	89.9719956430889	4	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	4382612	4405140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4382712_4384827_4384934_4385185_4385372_4389491_4389737_4400646_4400810_4403471
29912	chr13	-	3103	14	NIC	ENSMUSG00000039233.13	novel	1844	17	NA	NA	-3	803	intron_retention	FALSE	canonical	3	15	junction_12	35.258470802257	5	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAGTTGATTGATTACGA	NA	False	NA	NA	False	NA	NA	NA	14214167	14171730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14203860_14203992_14214122
29913	chr3	-	1880	12	NNC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_11	1163.52800631854	1	66	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACAAGGCTTCCCCAGTC	NA	False	NA	NA	False	NA	NA	NA	108352532	108333930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335176_108335219_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344892_108352308
29914	chr11	+	1454	5	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4732.78147604556	6	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAAATATATCATGCCT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647758_75655540
29915	chr5	+	2530	15	NIC	ENSMUSG00000005514.15	novel	673	5	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	69.9187575194327	2	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	NA	False	NA	NA	False	NA	NA	NA	135754592	135764180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135754896_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
29917	chr16	+	2035	9	NNC	ENSMUSG00000022871.14	novel	1544	8	NA	NA	-251	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	218.928605657187	1910	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	NA	False	NA	NA	NA	22736832	22758502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22737341_22739003_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
29918	chr1	-	1949	13	NIC	ENSMUSG00000013593.13	novel	1623	13	NA	NA	-289	-5	combination_of_known_junctions	FALSE	canonical	3	18	junction_12	393.202202717917	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGCTTGTAATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	171079246	171062426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171078786
29920	chr1	+	2507	5	NIC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	1	-359	intron_retention	FALSE	canonical	3	10	junction_1	85.1146285899198	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGCCTCCTGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	165957986	165993719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_165958174_165980136_165980354_165985081_165985238_165991341_165992285_165992715
29922	chr3	-	2209	6	ISM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	7370	0	-472	0	3prime_fragment	FALSE	canonical	3	896	junction_4	26.0967430918113	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	7362	False	NA	NA	False	NA	NA	NA	153642899	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931
29923	chr8	+	4192	8	FSM	ENSMUSG00000065439.3_ENSMUSG00000031930.12	ENSMUST00000212993.2	2098	8	-26	-2068	-26	686	multi-exon	FALSE	canonical	3	617	junction_2	50.4570943212839	12	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTAAGCATTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	108277942	108285913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
29924	chr17	-	2616	5	FSM	ENSMUSG00000077450.14	ENSMUST00000173860.8	1544	5	-20	-1052	-20	1052	multi-exon	FALSE	canonical	3	11	junction_4	253.00296440951	4	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGGAAAAACTAA	NA	False	NA	NA	False	NA	NA	NA	33979300	33964671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968877_33979196
29925	chr17	-	2792	4	NNC	ENSMUSG00000095325.4	novel	5337	4	NA	NA	-23	1859	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	76.856287243718	15	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTTCCTTTGTCATG	NA	False	NA	NA	False	NA	NA	NA	33110530	33100976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33103140_33104676_33104738_33104930_33105058_33110089
29926	chrX	+	2523	9	Antisense	novelGene_ENSMUSG00000031229.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAAGGCCTATGCCGAC	NA	False	NA	NA	False	NA	NA	NA	104919717	104972917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_104921180_104921972_104922041_104923514_104923625_104931320_104931445_104932597_104932651_104934521_104934579_104943486_104943600_104955075_104955263_104972568
29927	chr11	+	1807	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	-7	2	-7	-2	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	1855	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCACCCCCCGGTCTCTG	1223	False	NA	NA	False	NA	NA	NA	101010756	101017243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
29928	chr1	-	2921	16	NNC	ENSMUSG00000026430.17	novel	3485	6	NA	NA	20143	23197	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	48	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGCCCGGAACTGAC	NA	False	NA	NA	False	NA	NA	NA	131107729	131080949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_131081160_131081962_131082155_131082902_131082987_131083367_131083464_131085929_131086036_131088145_131088347_131089011_131089137_131091256_131091301_131092139_131092242_131092354_131092507_131092856_131092947_131094063_131094158_131095854_131095976_131098671_131098848_131106335_131106623_131106888
29929	chr7	+	1645	5	NIC	ENSMUSG00000025503.6	novel	1229	8	NA	NA	-1483	-2	intron_retention	FALSE	canonical	3	3267	junction_1	185.45804781675	38	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGCTGTTTCATTTCAC	1459	False	NA	NA	False	NA	NA	NA	140977857	140982877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140978516_140980200_140980333_140981493_140981670_140981784_140982243_140982656
29930	chr7	+	4398	7	NNC	ENSMUSG00000030870.13	novel	4849	7	NA	NA	256	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	261.495485408236	135	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTGTGTCTCTCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	121666925	121681414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_121666967_121667065_121667217_121668003_121668213_121670924_121670991_121671132_121671239_121675330_121675414_121677672
29931	chr6	+	2077	1	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	18645	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	NA	False	NA	NA	NA	40371619	40373696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_40371600_40373700
29932	chr14	+	3625	12	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	38063	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	16.6649034880032	1	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAACACCTTTTCCTCC	NA	False	NA	NA	False	NA	NA	NA	26874918	27125859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122405_27123586
29934	chr13	-	3358	3	NNC	ENSMUSG00000042364.12	novel	4447	2	NA	NA	1045	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	248	1	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCGCTTGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	113754055	113728718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113729439_113729478_113731399_113753337
29935	chr14	+	3569	11	FSM	ENSMUSG00000021895.11	ENSMUST00000049206.6	3585	11	23	-7	23	0	multi-exon	FALSE	canonical	0	0	junction_1	18.4361058794964	2	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	NA	NA	NA	26960018	27125868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26960111_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
29936	chr10	+	1919	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_9	585.54914871047	44	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCTGCCTGTCATTGGG	1621	False	NA	NA	False	NA	NA	NA	79690498	79700267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697849_79697882_79698282_79698376_79698486_79698657_79699805
29937	chr2	+	1493	8	ISM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	55	27508	55	-16991	intron_retention	FALSE	canonical	3	2348	junction_1	217.375063812175	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCCCAAGGTAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	31360273	31383176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325
29938	chr7	-	3054	7	NIC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_6	9.45163125250522	181	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGTCATTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	4448635	4428665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448412
29939	chr8	-	3220	11	Antisense	novelGene_ENSMUSG00000031756.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTCGGGCCCCGCCCA	5633	False	NA	NA	False	NA	NA	NA	117668058	117648460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_117648522_117649065_117649180_117652819_117653000_117655272_117655321_117657816_117657875_117658330_117660201_117661431_117661533_117662929_117662991_117663898_117664012_117667180_117667309_117667572
29940	chr4	+	4692	5	Antisense	novelGene_ENSMUSG00000028980.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACCCTTAGCCACACG	579	False	NA	NA	False	NA	NA	NA	150064130	150086023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_150067384_150068364_150068634_150078927_150079046_150080203_150080838_150085605
29941	chr3	+	1440	8	NNC	ENSMUSG00000041355.14	novel	560	5	NA	NA	-15	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2225.73521904698	33	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGATGTGTTTGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	88483230	88495721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88483288_88483545_88483689_88483806_88483911_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494338_88495114
29942	chr3	-	2851	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	-7	-1859	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	660	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTATAAAGCTCGGTAAAA	NA	False	NA	NA	False	NA	NA	NA	53771194	53762655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764304_53764426_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
29943	chr18	+	2112	22	ISM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	29	12972	29	-12675	5prime_fragment	FALSE	canonical	3	285	junction_3	18.0007558420293	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGATGTTTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	50261296	50316364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225
29944	chr7	-	2268	15	NIC	ENSMUSG00000059119.10	novel	2281	15	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	31	junction_14	296.821538150795	1	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACAAACTGAGATTGGTT	NA	False	NA	NA	False	NA	NA	NA	143102565	143067327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102483
29946	chr10	-	2585	9	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	24	3	at_least_one_novel_splicesite	FALSE	canonical	3	185	junction_2	286.724933516428	2	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCATTACAGCATTGC	5222	False	NA	NA	False	NA	NA	NA	62322560	62291010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292638_62294702_62294813_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
29947	chr19	+	1818	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1090.18559887755	14	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1486	False	NA	NA	False	NA	NA	NA	44282531	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44294657
29948	chr2	+	1652	4	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	310	junction_1	2358.18550773447	781	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGGGCTTGGCTGCTTT	5796	False	NA	NA	False	NA	NA	NA	32851725	32854053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32851973_32852060_32852135_32852585_32853866_32854002
29949	chr15	-	3649	2	Antisense	novelGene_ENSMUSG00000022415.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGCCCCCCGCTCGGCGCG	NA	False	NA	NA	False	NA	NA	NA	79998178	79975578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79975693_79994643
29950	chr9	+	3350	12	NNC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	2	-54	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	292.210017307545	1	131	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATTCTTATTCTAGT	1165	False	NA	NA	False	NA	NA	NA	108394303	108437308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108394440_108395965_108396026_108405787_108406118_108407086_108407215_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
29951	chr16	+	2282	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	5	0	5	0	multi-exon	FALSE	canonical	3	240	junction_8	30.8696857774743	499	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	NA	False	NA	NA	NA	13981143	14010792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
29953	chr3	-	2146	9	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	284.168084062936	48	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAACAAAGCGAGACAATT	NA	False	NA	NA	False	NA	NA	NA	10416376	10405030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10415562_10416118_10416301
29954	chr7	+	1318	1	Genic_Genomic	ENSMUSG00000025510.15	novel	NA	NA	NA	NA	-222	5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCAGCTTGCTGACAGGA	2049	False	NA	NA	False	NA	NA	NA	141050073	141051391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_141050100_141051400
29955	chr2	-	2769	10	NIC	ENSMUSG00000037376.15	novel	2948	11	NA	NA	12	-15	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	158.13129409715	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGAGCCATAAGTCAT	NA	False	NA	NA	False	NA	NA	NA	132657921	132646141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132653967_132654096_132657723
29956	chr15	+	1501	9	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	37246	10	-734	-10	3prime_fragment	FALSE	canonical	3	1727	junction_1	164.772570532841	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTAATGTTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	81793755	81799324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
29957	chr12	-	2923	6	NNC	ENSMUSG00000021276.11	novel	1579	6	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	5	junction_2	189.338849684897	326	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATACATATTAATCCTGT	3388	False	NA	NA	False	NA	NA	NA	110855540	110839597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110840564_110843274_110844549_110845130_110845474_110846118_110846249_110850323_110850493_110855499
29958	chr14	+	2302	14	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	117.238642982099	56	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTCTGGTGCCAGCAT	4	True	NA	NA	False	NA	NA	NA	25842608	25887224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842724_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
29960	chr2	+	1339	5	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	-3	intron_retention	FALSE	canonical	3	310	junction_1	2554.7315416693	929	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAATGGGCTTGGCTGCTT	5796	False	NA	NA	False	NA	NA	NA	32851725	32854052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853866_32854002
29962	chr11	+	2210	8	Fusion	ENSMUSG00000018567.15_ENSMUSG00000018572.11	novel	2214	4	NA	NA	-47	-7	multi-exon	FALSE	canonical	3	4	junction_4	308.488944001934	18	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTACAGCCCTCCTTG	5177	False	NA	NA	False	NA	NA	NA	69882417	69890825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284_69885367_69888422_69888455_69888571_69888665_69889126_69889959_69890063
29963	chr14	+	2040	9	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	21	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	545.082318897797	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGTTTGTTTCCACTTCCC	NA	False	NA	NA	False	NA	NA	NA	55779882	55786378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782887_55785153_55785292_55785496_55785593_55785761
29964	chr11	-	3523	20	NIC	ENSMUSG00000002814.16	novel	2932	20	NA	NA	-8	-10	combination_of_known_junctions	FALSE	canonical	2	18	junction_19	35.8833907056155	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCATCCATATTTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	60668099	60630894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747_60667903_60668017
29965	chr5	+	2859	19	NNC	ENSMUSG00000029599.14	novel	4322	20	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	130.116246696256	13	35	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTAGACCAGGAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	120751179	120765686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761832_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
29968	chr8	+	2018	10	NIC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	-19	-21	intron_retention	FALSE	canonical	3	43	junction_5	990.52804224269	5	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAATAAACTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	84441877	84449882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449664_84449753
29969	chr10	+	1793	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	12	-1	0	1	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	1267	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	80438725	80451618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
29970	chr9	+	3794	16	FSM	ENSMUSG00000031918.17	ENSMUST00000155679.8	3088	16	47	-753	31	753	multi-exon	FALSE	canonical	3	129	junction_2	100.813138473559	204	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAAAGCCTACAGTTGGA	NA	False	NA	NA	False	NA	NA	NA	13660523	13718530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_13660697_13671713_13671785_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
29971	chr4	-	2118	8	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	76.5037013910478	625	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	132570445	132554239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570119_132570236_132570367
29972	chrX	-	2871	1	FSM	ENSMUSG00000083327.2	ENSMUST00000120233.2	2406	1	-256	-209	-256	209	mono-exon	FALSE	NA	NA	NA	NA	NA	1	119	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAGAGTGAATTACCAG	NA	False	NA	NA	False	NA	NA	NA	103392096	103389225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_103389200_103392100
29973	chr17	+	2867	4	Intergenic	novelGene_29	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	94	junction_1	21.5458168149231	1	124	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTATCTCCGAGTATGC	NA	False	NA	NA	False	NA	NA	NA	17225411	17261810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225539_17257537_17257665_17257906_17257968_17259258
29974	chr19	+	3915	9	NNC	ENSMUSG00000024780.8	novel	5179	7	NA	NA	22	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.5053375559658	1	100	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTGTAGTTATGATT	3872	False	NA	NA	False	NA	NA	NA	28967802	28997632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_28967877_28967931_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405_28995914_28997214
29975	chr15	-	1970	11	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	401	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	747.490876198499	2	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83056392	83037697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038237_83038384_83038924_83043026_83043127_83043585_83043713_83044331_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
29976	chr15	-	1512	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	766.930258128686	15	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2601	False	NA	NA	False	NA	NA	NA	43146177	43113453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43128966_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
29977	chr15	+	1936	4	ISM	ENSMUSG00000022369.14	ENSMUST00000170046.8	3197	17	65	46174	65	-4438	intron_retention	FALSE	canonical	3	167	junction_1	10.1980390271856	6	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCAGTTATCAGACAAGC	NA	False	NA	NA	False	NA	NA	NA	55421055	55428035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332
29978	chr4	-	2532	13	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	17	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	298.657226413306	1	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCAAACTTGTTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	122779636	122752859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756696_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
29979	chrX	+	4649	8	FSM	ENSMUSG00000035246.17	ENSMUST00000045898.4	4888	8	239	0	239	0	multi-exon	FALSE	canonical	3	56	junction_6	4.01527694930148	3	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTGCCTTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	92718946	92793557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_92719083_92745690_92745791_92750163_92750281_92761390_92761543_92763784_92763864_92775282_92775426_92778370_92778560_92789824
29980	chr3	+	1994	9	NIC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	31	-8	intron_retention	FALSE	canonical	3	1030	junction_1	86.1434124004848	46	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAAAGAGCATCATGTT	NA	False	NA	NA	False	NA	NA	NA	97066123	97083826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_97066682_97073158_97073288_97073389_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
29981	chr2	+	3548	6	ISM	ENSMUSG00000016921.15	ENSMUST00000017065.15	1666	7	424	-2090	325	-5	3prime_fragment	FALSE	canonical	3	50	junction_1	427.5132746477	364	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGACTTGTTCTTCATT	NA	False	NA	NA	False	NA	NA	NA	162773905	162779036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162774063_162774734_162775003_162775345_162775471_162775573_162775783_162776147_162776232_162776331
29982	chr7	-	3200	25	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-44	71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	433.280748011289	1	133	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTGTGCCCTCCCCCC	NA	False	NA	NA	False	NA	NA	NA	44198201	44182632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182726_44182796_44182850_44183107_44183222_44183314_44183442_44183808_44183912_44183987_44184141_44184440_44184605_44185118_44185261_44186951_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
29983	chr3	-	3285	24	NNC	ENSMUSG00000028127.11	novel	3489	23	NA	NA	-8	-103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	63.1709057005845	1	102	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGATTCCATAAATGCAT	7259	False	NA	NA	False	NA	NA	NA	121608823	121552658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578130_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121599911_121599948_121608657
29984	chr17	-	2912	3	NIC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	-3494	-3	intron_retention	FALSE	canonical	3	1936	junction_2	129	8	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAAGTGGCTTGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	33872155	33865215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_33865634_33867786_33869372_33871246
29985	chr9	-	1111	8	Antisense	novelGene_ENSMUSG00000032294.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTGCGCCGACTGGGCC	NA	False	NA	NA	False	NA	NA	NA	59579240	59563858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_59563929_59572478_59572649_59573144_59573236_59575829_59575972_59576203_59576381_59577747_59578018_59578854_59579007_59579201
29987	chr1	-	2764	10	NNC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-40	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	26.303546209777	72	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATAAATACACTGTTGT	NA	False	NA	NA	False	NA	NA	NA	130390228	130366774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_130368117_130375355_130375377_130376064_130376169_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
29988	chr19	-	1887	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-7	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.574727405454	1	48	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATATGTTGCTACGGTCT	3756	False	NA	NA	False	NA	NA	NA	7017342	6998080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998138_6998354_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
29990	chr4	-	1564	10	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	53	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.996885926193	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATATAGCCCCATGCTG	2545	False	NA	NA	False	NA	NA	NA	129229110	129203316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203672_129212154_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
29991	chr9	-	4666	11	Intergenic	novelGene_1165	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	162	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGGCGGGTCCGGGCGGC	8845	False	NA	NA	False	NA	NA	NA	108627630	108569637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_108569910_108591469_108591506_108594059_108594113_108596399_108596483_108605367_108605479_108610307_108610462_108617632_108617734_108617884_108617959_108621425_108621493_108622678_108622821_108624057
29992	chr19	-	1748	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	73	796	-56	-344	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGCATGACTGTCGTC	NA	False	NA	NA	False	NA	NA	NA	15902350	15882837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
29993	chr19	+	3930	9	FSM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	26	9	21	-9	multi-exon	FALSE	canonical	3	29	junction_1	123.021784148174	5	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTACCTAGAGCTTGTGT	3958	False	NA	NA	False	NA	NA	NA	53933336	54021553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
29994	chr10	-	1643	13	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	686.744716438034	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899687	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897445_116899595
29995	chr6	+	4108	30	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	130.5044543456	1	206	19	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCACAGAGGTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	116185175	116239622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116185291_116185914_116186032_116190908_116190972_116193006_116193181_116194710_116194805_116195624_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201951_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232016_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239298
29996	chr5	+	1994	2	Antisense	novelGene_ENSMUSG00000046000.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGCCGGTGTGAGCGCT	NA	False	NA	NA	False	NA	NA	NA	97531152	97539904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_97532731_97539488
29998	chr1	-	2837	15	ISM	ENSMUSG00000026193.16	ENSMUST00000190780.7	7694	44	0	43441	0	492	5prime_fragment	FALSE	canonical	3	1514	junction_6	79.5980976082792	1	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCTCACCCCTAAGCCT	NA	False	NA	NA	False	NA	NA	NA	71692331	71668123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
29999	chr9	+	4556	14	NNC	ENSMUSG00000032293.9	novel	5770	22	NA	NA	-6420	-39	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	78.0905255297644	1	180	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTAAATTATTTTTAATAA	NA	False	NA	NA	False	NA	NA	NA	54798336	54819775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54798459_54799758_54799857_54802662_54802801_54803754_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
30000	chr1	+	1991	18	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	258.574345288782	20	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCTCCTGCTTGCCGTTT	3064	False	NA	NA	False	NA	NA	NA	171910395	171949890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938355_171949619
30001	chr13	+	1330	2	Antisense	novelGene_ENSMUSG00000045136.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGATCTGCCCAAATGGT	NA	False	NA	NA	False	NA	NA	NA	34311205	34312875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34312514_34312853
30002	chr3	+	1799	12	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1002.71976425113	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3811	False	NA	NA	False	NA	NA	NA	88204429	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206714_88210128_88210172_88212325_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
30003	chr19	-	3051	13	NNC	ENSMUSG00000024665.9	novel	3150	12	NA	NA	-16	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	114.644468539335	304	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAATTTTATTCTCACTT	9855	False	NA	NA	False	NA	NA	NA	10079126	10040145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10041428_10041525_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
30004	chr4	-	2119	8	NNC	ENSMUSG00000028622.12	novel	1498	7	NA	NA	23	759	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	273.680582476159	3	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTGCGCGGGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	106924042	106912311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_106913302_106914643_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646_106923723_106923762
30007	chr1	+	2194	9	NIC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	0	-41	intron_retention	FALSE	canonical	3	905	junction_6	69.3116828175453	31	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACGGTTTGTTCTATTCC	NA	False	NA	NA	False	NA	NA	NA	15875887	15913653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
30008	chr10	+	3643	22	ISM	ENSMUSG00000035697.15	ENSMUST00000105373.8	3867	23	897	3	897	-2	3prime_fragment	TRUE	canonical	3	10	junction_1	19.8641645687304	142	28	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGCCCGATCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	79853646	79867300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79853939_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
30009	chr11	+	1588	1	Intergenic	novelGene_2475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGCGCACGCCTTTAATC	3570	False	NA	NA	False	NA	NA	NA	98071161	98072749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_98071200_98072700
30010	chr12	+	2161	2	Antisense	novelGene_ENSMUSG00000041359.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTGCCCGCTGGGTAG	NA	False	NA	NA	False	NA	NA	NA	105183023	105188887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_105185089_105188791
30014	chr17	-	2730	5	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	10	1830	multi-exon	FALSE	canonical	3	16	junction_4	59.1877309921575	117	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTAAGTGGCTCATGTT	NA	False	NA	NA	False	NA	NA	NA	37292119	37278256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37292031
30015	chr17	+	573	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	-36	intron_retention	FALSE	canonical	3	5436	junction_1	2267	106	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGATGAACCCTCCCCCA	NA	False	NA	NA	False	NA	NA	NA	56920415	56921207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56920449_56920585_56921042_56921123
30016	chr14	+	3107	7	NIC	ENSMUSG00000002325.16	novel	2459	9	NA	NA	471	0	intron_retention	FALSE	canonical	3	25	junction_4	14.5916642870739	86	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCATGTGGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	55842506	55847487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55845313_55846141_55846258_55846377
30017	chr14	+	3870	23	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-19	-6	intron_retention	FALSE	canonical	0	0	junction_2	158.321072455536	1	207	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGCCCTGCTGGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	32043956	32070102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045919_32047760_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065281_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068811_32069462
30018	chr6	-	2683	13	NNC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.6903368879471	7	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	112673664	112603375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112603474_112604439_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
30019	chr15	-	1594	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	5	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5258.74321698847	2	67	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTTTGTTTCTGGA	163	False	NA	NA	False	NA	NA	NA	98832314	98829313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830435_98830572_98830722_98830853_98831077_98832213
30020	chr1	+	4561	20	NNC	ENSMUSG00000040782.13	novel	5116	20	NA	NA	7	-120	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_6	107.543510488543	158	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAACTTGTCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	159067137	159175090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_159067192_159072158_159072257_159076771_159076849_159077592_159077713_159080117_159080187_159086216_159086313_159094326_159094387_159095678_159095756_159105658_159105717_159112117_159112233_159116474_159116611_159134142_159134287_159135979_159136089_159136452_159136535_159147293_159147411_159152486_159152605_159154646_159154772_159156171_159156333_159170376_159170422_159172390
30021	chr7	-	1793	9	NIC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	5	-2	intron_retention	FALSE	canonical	3	2548	junction_5	205.567963214116	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875297	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
30022	chr11	-	2749	2	FSM	ENSMUSG00000035455.13	ENSMUST00000171080.8	2844	2	10	85	-4	-85	multi-exon	FALSE	canonical	3	48	junction_1	0	2	108	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGGAGTTGCTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	11758952	11750372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11753064_11758894
30023	chr1	-	2065	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-2	-3	-2	0	multi-exon	FALSE	canonical	3	59	junction_8	12	517	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTAATTTGGTCACTGG	NA	False	NA	NA	False	NA	NA	NA	90017868	89969853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
30024	chr10	-	2662	11	FSM	ENSMUSG00000039480.15	ENSMUST00000130290.2	1978	11	-28	-656	-4	0	multi-exon	FALSE	canonical	2	9	junction_6	26.4469279879535	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	NA	False	NA	NA	NA	34294552	34179604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
30025	chr7	+	2818	21	Antisense	novelGene_ENSMUSG00000108319.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	25	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACCCCGACACTTCTT	NA	False	NA	NA	False	NA	NA	NA	73122821	73169422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_73122859_73124254_73124405_73125093_73125244_73128408_73128481_73130150_73130308_73130714_73130872_73134156_73134344_73140224_73140418_73141082_73141173_73143172_73143390_73147454_73147579_73149339_73149521_73149686_73149732_73150682_73150783_73151655_73151883_73153128_73153265_73154737_73154877_73157553_73157664_73163838_73163899_73165472_73165561_73169224
30026	chr2	+	3640	6	FSM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	-17	3	-17	-3	multi-exon	FALSE	canonical	3	25	junction_4	7.22218803410712	169	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTGTCAACCACTTCCT	NA	False	NA	NA	False	NA	NA	NA	32477089	32489707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
30027	chr5	+	4275	13	NNC	ENSMUSG00000029263.16	novel	4573	13	NA	NA	213	-5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_12	21.0297408448131	1	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTAACTTTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	108460714	108497216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108460945_108461824_108462031_108465128_108465339_108466690_108466880_108467761_108467904_108474682_108474896_108479840_108480059_108480549_108480832_108483969_108484428_108486420_108486613_108489660_108489971_108492089_108492254_108495755
30028	chr3	+	3217	7	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	605.073939467089	1	156	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	NA	False	NA	NA	NA	95836602	95854702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842199_95844335_95844508_95845193_95845352_95851618_95851674_95852491
30029	chr4	+	4639	1	NIC	ENSMUSG00000042198.13	novel	381	4	NA	NA	0	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	16	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	3938887	3943526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_3938900_3943500
30030	chr17	+	3692	5	NIC	ENSMUSG00000023908.9	novel	2902	7	NA	NA	-16	-2	intron_retention	FALSE	canonical	3	451	junction_4	39.6925685739787	22	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGCATAGCTCTTCTTG	3055	False	NA	NA	False	NA	NA	NA	23945426	23955699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_23945616_23951310_23954347_23954536_23954695_23955297_23955376_23955468
30031	chr4	-	2926	11	NNC	ENSMUSG00000037443.14	novel	3893	14	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	129.994769125531	7	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	133914348	133857168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133858289_133866190_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
30032	chr7	-	1950	18	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-9	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	914.861231370288	2	63	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGGGGCTCAGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	33929723	33901584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901963_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905062_33905230_33905355_33907030_33907184_33907281_33907326_33907674_33907729_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926632_33928345_33928422_33928716_33928799_33929516
30033	chr4	+	2114	17	NNC	ENSMUSG00000029034.10	novel	481	4	NA	NA	271	134	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	312.655336392968	1	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTTTTATTCCTACTC	NA	False	NA	NA	False	NA	NA	NA	155954342	155973324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954591_155956583_155956682_155957306_155957381_155959685_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
30034	chr6	-	1625	11	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3447.35722111881	1	34	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441566_51443252_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
30035	chr5	-	4210	31	NNC	ENSMUSG00000038095.16	novel	10071	32	NA	NA	7	100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	155.380969090669	1	100	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTTGTGCTCTCTAGT	NA	False	NA	NA	False	NA	NA	NA	124564013	124512494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542337_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548458_124552486_124552591_124563909
30036	chr11	+	2202	14	NNC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	161.615476146864	1	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50268623	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268686_50269117_50269255_50270294_50270449_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
30037	chr18	+	2695	21	NIC	ENSMUSG00000024271.9	novel	3466	22	NA	NA	-2	-5	combination_of_known_junctions	FALSE	canonical	3	14	junction_2	199.323581143828	1	103	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAACTTTGTCTGATTT	NA	False	NA	NA	False	NA	NA	NA	24737015	24771862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_24737190_24739913_24739993_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
30038	chrX	-	2849	11	NNC	ENSMUSG00000031232.18	novel	1608	11	NA	NA	62	-655	intron_retention	FALSE	non_canonical	0	0	junction_1	70.7856623900632	1	111	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATCCCAAAGACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	105055324	105012344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012837_105013675_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
30039	chr15	+	2501	15	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	20011	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_14	51.5799854396953	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAACTGTCTTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	57799419	57833463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57833119
30040	chr11	+	3743	16	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	36	junction_1	13.8884444373331	5	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATTAAAATACAATATTCT	NA	False	NA	NA	False	NA	NA	NA	119246410	119271874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119246466_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
30041	chr14	-	1596	8	NNC	ENSMUSG00000060373.16	novel	1301	8	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1358.28724682887	3	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGAATTTGAAGGAAAGA	8756	False	NA	NA	False	NA	NA	NA	52341454	52311913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321842_52341413
30044	chr6	+	4593	35	NNC	ENSMUSG00000030111.10	novel	4605	36	NA	NA	-2	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	11.9821450211537	88	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATCCATCACCATTCC	NA	False	NA	NA	False	NA	NA	NA	121613184	121656173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_121613355_121615234_121615419_121616164_121616322_121616473_121616527_121618210_121618400_121618947_121619033_121621073_121621195_121621852_121621968_121622110_121622221_121623757_121623920_121624907_121625136_121625563_121625628_121626725_121626869_121631423_121631574_121634338_121634507_121634891_121634968_121636245_121636373_121636878_121637108_121637801_121637929_121638385_121638508_121639351_121639404_121644073_121644158_121645004_121645182_121645487_121645576_121646470_121646628_121646894_121646970_121647860_121648042_121650425_121650650_121651689_121651909_121652077_121652206_121653009_121653101_121653862_121653932_121654940_121655044_121655477_121655520_121656050
30045	chr13	+	2542	14	NNC	ENSMUSG00000062822.9	novel	2795	13	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	51.0218655992778	191	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119599380	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608702_119608777_119610368_119610493_119610648_119610731_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
30046	chr17	+	1897	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	13	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1345.61785863878	2	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACCACCTGGGTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	13135281	13143440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142431_13142600_13143172
30048	chr13	+	2387	17	NNC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	9	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	56.3126040509583	27	9	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGTAGTTTGCATTCTT	4747	False	NA	NA	False	NA	NA	NA	38221229	38245405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244818
30049	chr19	+	3544	22	FSM	ENSMUSG00000053799.9	ENSMUST00000066439.8	3543	22	-15	14	-15	-14	multi-exon	TRUE	canonical	3	69	junction_16	11.2298193902402	205	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTCTTTCAGCTATTCG	1854	False	NA	NA	False	NA	NA	NA	37538850	37672493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_37539014_37558830_37559003_37560040_37560089_37560305_37560397_37562159_37562206_37565383_37565589_37566867_37567024_37570640_37570710_37574258_37574343_37576085_37576133_37576264_37576386_37578298_37578371_37579315_37579414_37582109_37582216_37585542_37585653_37587013_37587126_37588006_37588142_37597373_37597554_37628069_37628212_37641830_37641905_37670107_37670221_37671293
30050	chr16	+	3095	28	NNC	ENSMUSG00000038084.17	novel	6230	29	NA	NA	49	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	132.948683851037	1	92	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTCATGTACGTGTGT	NA	False	NA	NA	False	NA	NA	NA	29398258	29470688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407071_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29434036_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
30051	chr10	+	3414	12	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	391	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	34.3374118308248	48	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	NA	NA	NA	103204094	103255236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_103204182_103224757_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
30052	chr1	-	2664	17	NIC	ENSMUSG00000026425.16	novel	3533	22	NA	NA	15	9000	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	33.0603141999588	1	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACCCCAGGGAGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	131455070	131238272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131339537_131339701_131364412_131364606_131452675_131453332_131454970
30053	chr10	-	3222	3	NNC	ENSMUSG00000020086.7	novel	2175	9	NA	NA	45437	5128	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTGCTGTTCTTTCAG	NA	False	NA	-72	True	NA	NA	NA	61574489	61569315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61570208_61571235_61571434_61572357
30054	chrX	+	1299	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-23	-66	-23	66	mono-exon	FALSE	NA	NA	NA	NA	NA	27	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068786	13070085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
30055	chr16	-	3868	16	Antisense	novelGene_ENSMUSG00000039456.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	197	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCGGGGCGGAACCGAC	NA	False	NA	NA	False	NA	NA	NA	93672965	93629110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_93629234_93638257_93638325_93641078_93641203_93642021_93642243_93644174_93644317_93646015_93646165_93649975_93650095_93652362_93652400_93657378_93657486_93659301_93659423_93659526_93659604_93661847_93661904_93663260_93663421_93667249_93668138_93670124_93670281_93671644
30057	chr5	-	2143	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	33	-581	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	25	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4354	False	NA	NA	False	NA	NA	NA	123887444	123866488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
30059	chr1	-	3208	10	NNC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	-13	-2	intron_retention	FALSE	canonical	3	10	junction_7	34.051522327783	33	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGCTCTTTACTATTC	5176	False	NA	NA	False	NA	NA	NA	171108773	171104566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171107846_171107961_171108097_171108247_171108343_171108446
30060	chr10	+	2574	15	NNC	ENSMUSG00000019916.15	novel	2918	15	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	48.9358180243703	4	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTTTTTTTAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	59159189	59207766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186386_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
30061	chr2	-	3413	8	NIC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	791	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_7	27.6708053621096	116	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGGTCTGGTATGGAT	NA	False	NA	NA	False	NA	NA	NA	35352452	35290192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35352356
30063	chr14	-	2715	10	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5073	-44	intron_retention	FALSE	canonical	3	278	junction_1	41.3909395465144	24	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGCCAATATTTAGCACA	NA	False	NA	NA	False	NA	NA	NA	59607992	59586224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
30067	chr17	+	2885	6	NNC	ENSMUSG00000071266.14	novel	2926	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.6444800798049	1	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGTTGTTTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	22643197	22675670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_22643411_22663148_22663273_22665777_22665875_22670075_22670134_22672432_22672560_22673404
30068	chr2	+	2398	10	NIC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	-18	0	intron_retention	FALSE	canonical	3	4	junction_6	620.283348235921	20	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	90884421	90889777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90886986_90888207_90888354_90888501_90889390_90889473_90889598
30072	chr15	+	1714	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-28	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	506.738070626455	10	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959419	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961077_78962290_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
30073	chr2	+	1812	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	55	-791	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1799.76148111045	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGTGGGGGGAATTGAGT	NA	False	NA	NA	False	NA	NA	NA	121244418	121268377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255009_121255124_121257074_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265403_121266406_121266482_121266837_121266896_121268066
30074	chr11	-	697	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	98	548	-98	-86	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGGCTGGACTCCTATT	6369	False	NA	NA	False	NA	NA	NA	69812114	69808093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
30078	chr8	+	3613	8	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	1387	0	intron_retention	FALSE	canonical	3	354	junction_1	49.9840790979018	166	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTGATTTTAGTT	NA	False	NA	NA	False	NA	NA	NA	106615410	106619840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617310_106617396_106617513_106617599_106619063_106619301
30079	chr2	-	4174	5	Antisense	novelGene_ENSMUSG00000027575.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGCTGCAAGGAGGAAAACA	1331	False	NA	NA	False	NA	NA	NA	180620468	180612846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180612908_180613366_180613475_180613774_180613947_180614485_180615949_180618098
30080	chr16	-	994	7	FSM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	50	0	-20	0	multi-exon	FALSE	canonical	3	1101	junction_3	73.0062782688357	2123	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAACTTTATTTTCTTAA	NA	False	NA	-81	True	NA	NA	NA	95792110	95781132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
30081	chr9	+	1755	13	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	164	-4	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	350.727685993311	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATGAGTTTGGGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	59446986	59472388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59470149_59470334_59470506_59470598_59471165_59471271_59472103
30082	chr2	-	3554	21	NIC	ENSMUSG00000015647.10	novel	11388	79	NA	NA	-2739	-9	intron_retention	FALSE	canonical	3	206	junction_18	44.8548771038334	32	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGACTTGAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	179824175	179818174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179818558_179818680_179818801_179818895_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142_179823292_179823364_179823545_179824150
30084	chr2	+	3184	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	228	630	228	-630	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	1	84	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTATGTACTACTGTATAG	NA	False	NA	NA	False	NA	NA	NA	80146037	80183757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
30086	chr14	-	3194	15	NNC	ENSMUSG00000048922.19	novel	3841	15	NA	NA	28	-361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	159.102729616523	1	91	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAAATACATTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	67952796	67914164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937866_67941412_67941493_67943079_67943222_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
30089	chr15	-	1376	11	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	11	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	806.335265258813	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	2674	False	NA	NA	False	NA	NA	NA	43146104	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43138608_43138751_43141703_43141819_43145998
30090	chr7	-	881	1	Antisense	novelGene_ENSMUSG00000074218.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAACCAGATTCCTCATG	NA	False	NA	NA	False	NA	NA	NA	29886085	29885204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_29885200_29886100
30091	chr15	-	2280	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	-15	6	-15	-6	multi-exon	FALSE	canonical	3	236	junction_16	35.978292066189	677	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTATAAGGGTCGATATT	NA	False	NA	NA	False	NA	NA	NA	97603721	97572983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
30093	chr5	+	4852	16	Antisense	novelGene_ENSMUSG00000106797.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTGCTCAATGCCAGCC	NA	False	NA	NA	False	NA	NA	NA	36647969	36750589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_36650457_36652359_36652620_36662367_36662479_36664921_36665049_36665701_36665775_36669796_36669895_36671384_36671464_36676616_36676722_36677785_36677908_36680272_36680354_36682273_36682392_36700519_36700641_36728638_36729382_36742125_36742181_36749302_36749486_36750500
30095	chr1	-	1722	13	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTCTGGGAAGTAACG	NA	False	NA	NA	False	NA	NA	NA	59750669	59724132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729722_59731495_59731547_59735134_59735257_59737479_59737616_59740040_59740109_59741969_59742106_59743220_59743366_59743777_59743908_59744749_59744914_59745789_59745926_59746160_59746223_59750427
30098	chr11	-	1205	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-31	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	4230.56229005082	2	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGAGGGGGGAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	69563141	69558238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69559983_69560958_69561099_69561440_69561574_69561753_69561803_69563104
30099	chr18	+	2602	8	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26618	-15621	at_least_one_novel_splicesite	FALSE	canonical	3	1189	junction_1	105.858395982558	13	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTCACCAGAAGCAAAGCA	6467	False	NA	-55	True	NA	NA	NA	77126285	77219012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745
30100	chr11	-	4002	14	FSM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	-23	8	-23	-8	multi-exon	TRUE	canonical	3	53	junction_12	15.262593015675	123	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGATCTTGGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	116089894	116062721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
30101	chr13	-	3577	5	NNC	ENSMUSG00000090641.3	novel	3968	4	NA	NA	6	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4.49305018890286	23	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCTTTTCTCTCTTAA	NA	False	NA	NA	False	NA	NA	NA	67209228	67186657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67187309_67187695_67190297_67192821_67192918_67200350_67200478_67209126
30102	chr11	+	2586	11	FSM	ENSMUSG00000061981.15	ENSMUST00000072289.12	2621	11	35	0	-18	0	multi-exon	FALSE	canonical	3	351	junction_3	23.4778619128744	284	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	104	True	NA	NA	NA	77928791	77951260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_77928939_77940303_77940386_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
30104	chrX	-	1848	1	Genic_Genomic	ENSMUSG00000087403.10	novel	NA	NA	NA	NA	21340	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTGACTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	151079667	151077819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_151077800_151079700
30105	chr16	+	3475	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	36	-66	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	257.149815636062	1	176	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCACCTGGGGCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	13598612	13632637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599861_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
30107	chr7	+	3441	10	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	8	-248	intron_retention	TRUE	non_canonical	0	0	junction_8	289.227323129134	1	159	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868009	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103881769_103881853_103882739_103882783
30108	chr9	-	3938	13	NNC	ENSMUSG00000032113.17	novel	3397	13	NA	NA	35	-157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	130.771641506185	1	138	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAACAACTGTTTTTTG	683	False	NA	NA	False	NA	NA	NA	36637919	36619934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634116_36634353_36635317_36637092_36637175_36637858
30109	chr8	-	3603	18	NNC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	24	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	176.383449074074	1	154	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCCTCTAGCTGTGGAT	NA	False	NA	NA	False	NA	NA	NA	73228656	73214328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73214447_73214478_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224886_73228455
30110	chr3	+	2617	15	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	-2	-9	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_5	276.116887774518	2	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGGTATTGGTATAGT	NA	False	NA	NA	False	NA	NA	NA	157742384	157772717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746144_157746260_157747222_157747297_157749197_157749328_157754037_157754197_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
30111	chr8	+	5295	20	FSM	ENSMUSG00000004568.14	ENSMUST00000004684.13	5271	20	-24	0	8	0	multi-exon	TRUE	canonical	3	218	junction_1	25.5526180280738	218	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGCTGAAACAGACCT	NA	False	NA	NA	False	NA	NA	NA	3443013	3506601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
30112	chr14	-	1752	14	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	253.617566076337	27	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741018	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30737214_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
30113	chr1	+	2122	9	ISM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	11370	4756	-931	1	3prime_fragment	FALSE	canonical	3	310	junction_5	53.5325543477985	1	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	NA	False	NA	NA	False	NA	NA	NA	175719516	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
30114	chrX	+	3139	9	FSM	ENSMUSG00000000134.18	ENSMUST00000079542.13	3163	9	24	0	-7	0	multi-exon	FALSE	canonical	3	29	junction_4	94.1407689314252	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	7628926	7641438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
30115	chr17	+	2318	16	FSM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	-77	-3	-12	3	multi-exon	FALSE	canonical	3	148	junction_6	179.285421108974	534	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACAGCTTTTATTGGCTT	NA	False	NA	NA	False	NA	NA	NA	56386621	56407601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
30116	chr10	-	1854	11	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	621.201126850234	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358255	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356349_127358219
30117	chr17	-	2766	7	NNC	ENSMUSG00000005371.16	novel	3753	23	NA	NA	10090	5637	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	101	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGGCCAAACGCAATCTC	7071	False	NA	-34	True	NA	NA	NA	88298320	88292649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_88294408_88295611_88295880_88296568_88296686_88296847_88296943_88297619_88297779_88297860_88298051_88298141
30118	chr14	+	1722	1	NIC	ENSMUSG00000022010.20	novel	1476	3	NA	NA	944	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	8103	False	NA	NA	False	NA	NA	NA	76743481	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_76743500_76745200
30119	chr8	+	2256	16	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	3	-67	intron_retention	FALSE	non_canonical	0	0	junction_4	325.172405553321	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTTTTGTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	107620285	107649652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627475_107627568_107630864_107631077_107632756_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
30120	chr8	-	2644	4	Intergenic	novelGene_1696	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	120	junction_2	10.1980390271856	168	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCCATTTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	89779649	89772259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89774422_89775330_89775532_89776215_89776356_89779508
30121	chr1	-	2185	11	NNC	ENSMUSG00000026301.17	novel	3210	19	NA	NA	-2	-3938	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	25.3724259778209	142	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAAAAAGCCAGGCCCC	NA	False	NA	NA	False	NA	NA	NA	90017868	89974285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_89974541_89974795_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
30122	chr11	-	3970	23	FSM	ENSMUSG00000001441.14	ENSMUST00000001480.14	4215	23	247	-2	17	0	multi-exon	FALSE	canonical	3	268	junction_18	36.1553409289133	519	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGCCTGGTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	97171217	97096667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97098095_97103105_97103154_97103857_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97158420_97158506_97171026
30123	chr7	-	1175	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	-1	-440	0	-5	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	255	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
30124	chr17	-	3509	21	FSM	ENSMUSG00000024170.16	ENSMUST00000115181.9	3530	21	17	4	4	3	multi-exon	TRUE	canonical	3	51	junction_18	13.9207578816672	133	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGGCTGCTTCTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	25334924	25318547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334386
30126	chr1	-	3838	23	NNC	ENSMUSG00000041879.14	novel	4189	25	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	253.526356886939	1	175	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTAGTCTGCATACTC	NA	False	NA	NA	False	NA	NA	NA	135358197	135312214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319238_135319383_135321879_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334313_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347095_135354739_135354775_135358001
30127	chr8	-	1712	2	FSM	ENSMUSG00000037070.11	ENSMUST00000211719.2	1622	2	-14	-76	5	68	multi-exon	FALSE	canonical	3	608	junction_1	0	3113	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATCTAGATAGTATTTGGT	NA	False	NA	NA	False	NA	NA	NA	79235522	79231829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_79233447_79235427
30128	chr2	+	2445	8	Antisense	novelGene_ENSMUSG00000052406.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCCCAGGGTGCAAGC	NA	False	NA	NA	False	NA	NA	NA	26843599	26854326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_26844613_26845510_26845584_26846302_26846373_26848487_26848579_26850234_26850430_26850614_26850752_26852393_26852995_26854061
30129	chr7	+	3751	6	Antisense	novelGene_ENSMUSG00000118906.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCACCGTGGAGTACGCC	NA	False	NA	NA	False	NA	NA	NA	108635062	108682471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_108638089_108647155_108647304_108653571_108653666_108655950_108656103_108656987_108657216_108682368
30130	chr8	-	1451	6	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-36	-241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	522.711545692268	40	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85573495	85568719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569666_85570693_85570833_85572490_85572695_85572878_85572981_85573336
30131	chr13	+	2729	1	NIC	ENSMUSG00000078941.10	novel	1298	5	NA	NA	2221	516	mono-exon	FALSE	NA	NA	NA	NA	NA	14	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATGACTTACACAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	100790354	100793083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_100790400_100793100
30133	chr8	+	3099	14	Antisense	novelGene_ENSMUSG00000033596.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGCACCCGCTCCGCCCGC	NA	False	NA	NA	False	NA	NA	NA	111998845	112026832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_111999785_112000436_112000655_112002851_112003067_112004826_112005006_112006519_112006668_112009147_112009267_112009308_112009377_112009906_112010023_112014696_112014782_112014860_112015044_112017502_112017571_112020620_112020810_112023768_112024275_112026766
30134	chr8	+	4061	33	NNC	ENSMUSG00000036879.16	novel	5351	32	NA	NA	17	-586	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	30.84080533056	4	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTCTGAGCATCTGTTA	NA	False	NA	NA	False	NA	NA	NA	86567661	86786684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_86567733_86569632_86569742_86601645_86601708_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
30135	chr11	+	1961	11	NNC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	608	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	352.076142332877	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAAGGCTCCTTTCCTT	2242	False	NA	NA	False	NA	NA	NA	120675948	120679926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678210_120678292_120678522_120678618_120678701_120678808_120678887_120679423_120679495
30136	chr17	+	2439	9	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	19	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	212.357268241518	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTATTCTTTCCTTTAC	5641	False	NA	NA	False	NA	NA	NA	34128490	34134557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131659_34131721_34131782_34132246_34132701_34132816_34133037_34134316
30139	chr17	-	2045	5	NNC	ENSMUSG00000024026.14	novel	9865	6	NA	NA	30	-10	intron_retention	FALSE	canonical	2	4	junction_4	1331.23145526989	7	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTTAGTACATAAAGGTC	NA	False	NA	NA	False	NA	NA	NA	30821299	30811850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30820903
30140	chr6	-	1375	6	NNC	ENSMUSG00000030057.16	novel	1661	5	NA	NA	0	-95	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4542.52878471893	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGTTTTGACTAAAGTTC	NA	False	NA	NA	False	NA	NA	NA	87828004	87820158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820764_87820896_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
30141	chr2	+	1682	11	NIC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	14	-4	intron_retention	FALSE	canonical	3	1724	junction_1	111.704073336651	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGCCACAGTCTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	90884413	90889773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
30142	chrX	-	1823	10	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	-500	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_9	607.581727470104	647	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	72309496	72298145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72309120_72309275_72309371
30143	chr10	+	3293	3	NNC	ENSMUSG00000060935.7	novel	3616	3	NA	NA	44	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.5	3	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACAAAGATGGAATGTT	NA	False	NA	NA	False	NA	NA	NA	84938650	84953441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_84938707_84946662_84946730_84950271
30145	chr12	+	2363	12	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	133.197982264518	1	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157629	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170642_85177749_85177839_85179396
30146	chr5	-	1873	3	NIC	ENSMUSG00000047215.15	novel	680	7	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	5084	junction_2	3541.5	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTGTGTGTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	65548744	65545711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65546954_65547730_65548336_65548718
30147	chr3	+	4330	13	FSM	ENSMUSG00000037818.17	ENSMUST00000108077.10	3277	13	-61	-992	-2	-7	multi-exon	FALSE	non_canonical	0	0	junction_6	7.57554545157567	66	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAAGTATTTGCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	40848695	40892564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_40848879_40859320_40859429_40860306_40860392_40864937_40865039_40871120_40871200_40871306_40871392_40873812_40873841_40877847_40877987_40884571_40884662_40885315_40885418_40887958_40888338_40889301_40889465_40889776
30149	chr4	-	4054	22	Antisense	novelGene_ENSMUSG00000028397.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	106	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCTGAGGGTTTTGGG	NA	False	NA	NA	False	NA	NA	NA	74324065	74170267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_74170320_74181041_74181198_74189423_74189607_74199133_74199247_74216675_74216871_74225200_74225250_74229881_74229986_74233746_74233886_74248890_74249084_74251867_74252105_74252784_74253104_74255116_74255225_74261603_74261787_74263677_74263894_74266636_74266722_74275585_74275635_74277656_74277765_74291801_74291988_74295864_74296031_74309611_74309704_74317563_74317677_74323057
30150	chr11	+	2322	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-78	-682	-12	0	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	1	72	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	NA	False	NA	NA	NA	80274144	80287074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
30152	chrX	-	2164	9	NNC	ENSMUSG00000055653.14	novel	2216	8	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.3309080452047	8	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	51702850	51361302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_51361588_51361691_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
30153	chr5	+	2114	16	FSM	ENSMUSG00000029146.15	ENSMUST00000200730.4	2019	16	-89	-6	-22	0	multi-exon	FALSE	canonical	2	10	junction_3	132.900564332888	1106	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	NA	False	NA	NA	NA	31350548	31356244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
30154	chr1	-	6420	36	NNC	ENSMUSG00000096992.4	novel	1750	3	NA	NA	-11270	88597	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14	103	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCCCTTAGGAAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	34228797	34116339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_34116453_34125321_34125383_34153011_34153100_34155193_34155275_34156510_34156604_34174168_34174336_34191280_34191394_34191491_34191601_34193593_34193712_34195677_34195774_34195859_34195988_34199698_34199795_34200084_34200238_34202087_34202551_34202704_34202834_34202975_34203055_34203155_34203318_34203406_34203511_34204136_34204233_34205258_34205386_34206015_34206171_34206353_34206509_34206688_34206818_34206902_34207086_34208242_34208400_34208827_34209011_34209441_34209580_34210195_34210389_34211261_34211425_34212080_34212165_34213193_34213302_34213775_34213875_34223094_34223223_34225040_34225132_34225899_34226031_34227050
30155	chr9	+	3096	18	NNC	ENSMUSG00000032401.16	novel	2171	14	NA	NA	15636	34781	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	104	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTAAACTGAACTGCGCGC	NA	False	NA	NA	False	NA	NA	NA	64044952	64080181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64045344_64047173_64047302_64051364_64051475_64054106_64054205_64054571_64054690_64057419_64057602_64060176_64060232_64060820_64060932_64062444_64063391_64065976_64066056_64068105_64068254_64068647_64068724_64069845_64070045_64071627_64071739_64072644_64072740_64075893_64075949_64078697_64078810_64080099
30156	chr14	-	2067	19	NNC	ENSMUSG00000022040.9	novel	2035	19	NA	NA	2302	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	49.4572080904166	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAACCTCAGGGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	66359647	66321840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66359434
30157	chr11	-	4631	32	Antisense	novelGene_ENSMUSG00000093539.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	63	13	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTGTGGGCAACTCTG	9915	False	NA	NA	False	NA	NA	NA	115689572	115656286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_115656375_115668067_115668201_115676262_115676384_115676635_115676762_115676996_115677136_115678184_115678389_115679062_115679214_115679485_115679589_115679768_115679852_115680062_115680184_115680441_115680499_115680747_115680854_115680993_115681155_115681852_115682001_115682570_115682897_115683149_115683323_115683690_115683786_115683876_115684100_115684832_115685014_115685089_115685230_115685487_115685604_115685805_115685906_115686140_115686248_115686443_115686638_115686888_115686965_115687210_115687297_115687556_115687642_115687953_115688097_115688183_115688285_115688384_115688483_115688631_115688803_115689097
30160	chr4	-	3030	22	NNC	ENSMUSG00000003644.18	novel	3135	22	NA	NA	-295	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_21	263.446569987342	385	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCCGCTCTTCCTTCTGC	7669	False	NA	NA	False	NA	NA	NA	133615403	133574600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133615280
30161	chr7	-	2073	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	-31	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	754.133781235133	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTATAGGTGTGTGAAAG	NA	False	NA	NA	False	NA	NA	NA	99002235	98994640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995200_98995251_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002093
30162	chr17	+	3900	25	NNC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	6	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.2788022960108	1	128	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTTGTCTCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	25352444	25381062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25352514_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
30163	chr2	+	3489	6	ISM	ENSMUSG00000027397.15	ENSMUST00000110315.2	3219	10	5714	-6	-1296	-1	3prime_fragment	FALSE	canonical	3	303	junction_1	98.2677973702474	1	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTTGTGCTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	129046943	129053535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
30164	chr11	-	1700	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	44	0	44	0	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8237	False	NA	NA	False	NA	NA	NA	102907950	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
30165	chr9	-	1291	1	FSM	ENSMUSG00000058922.8	ENSMUST00000168019.2	960	1	18	-349	18	349	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123519239	123517948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_123517900_123519200
30166	chr7	-	1735	8	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1081.60538279061	3	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTCACTTTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	117728797	117718121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117718467_117718537_117719015_117719283_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
30167	chr19	-	2231	10	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-10780	-6517	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACGGGACGGCCTCACC	NA	False	NA	NA	False	NA	NA	NA	10593798	10582912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845
30168	chr6	-	3953	19	NIC	ENSMUSG00000035245.13	novel	4424	18	NA	NA	-6	4	combination_of_known_junctions	FALSE	canonical	3	4	junction_17	11.1428712748068	2	83	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACATCTTCAGGATTTTC	NA	False	NA	NA	False	NA	NA	NA	97125850	97086980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97124970_97125151_97125220_97125792
30169	chr16	+	3404	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	74	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	448.761633231059	1	160	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCCATGCTTCCGTGAC	NA	False	NA	NA	False	NA	NA	NA	13598650	13632686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599952_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616583_13617795_13617881_13622812_13622944_13624422_13624615_13626843_13626955_13628367_13628521_13629385_13629474_13630960
30170	chr4	-	2031	15	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	31	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	765.162784467916	2	61	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	8861	False	NA	NA	False	NA	NA	NA	129436453	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411713_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129425336_129425388_129428402_129428520_129436373
30172	chr16	-	3155	3	NNC	ENSMUSG00000051065.10	novel	3055	2	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	123	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4777	False	NA	NA	False	NA	NA	NA	28748445	28644927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_28647762_28741591_28741672_28748204
30173	chr19	-	1037	8	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	22	-213	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	1211.98924020279	8	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTCAATCCGAGTGTCC	3785	False	NA	NA	False	NA	NA	NA	7017313	6998282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002785_7012068_7012157_7012863_7013074_7017247
30174	chr14	+	2384	13	FSM	ENSMUSG00000052395.18	ENSMUST00000064230.16	2387	13	3	0	3	0	multi-exon	FALSE	canonical	3	31	junction_11	8.01171017948103	179	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTCTTTCCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	30376319	30413274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30376433_30380265_30380352_30382153_30382271_30383227_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30398806_30398858_30399643_30399775_30401187_30401333_30404707_30404814_30411661_30411912_30412398
30175	chr1	+	2370	8	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-3	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	279.122604909435	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTTTCACAGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	4878115	4916906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878210_4898789_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
30176	chr2	+	2299	3	NNC	ENSMUSG00000074578.15	novel	659	4	NA	NA	1	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTGCTGTGTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	166905141	166907778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166906362_166906568_166907191_166907321
30177	chr1	-	2864	16	NNC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-2	-11	intron_retention	FALSE	non_canonical	0	0	junction_3	103.671403964642	1	71	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTCTTTATTGAGTATT	NA	False	NA	NA	False	NA	NA	NA	160898214	160869085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160869501_160871182_160871259_160872528_160873047_160874360_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
30179	chr4	-	1893	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	59	125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	367.211808629154	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCAATAACCATAGATAAAA	2551	False	NA	NA	False	NA	NA	NA	129229104	129203184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203675_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216393_129216663_129222380_129222527_129228289_129228438_129229010
30181	chr14	+	2681	2	Genic_Genomic	ENSMUSG00000091617.9	novel	1817	6	NA	NA	8312	-14	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAGAAAACACAGCAG	NA	False	NA	NA	False	NA	NA	NA	14994322	15003397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_14995378_15001771
30182	chr4	-	2115	9	NIC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_8	55.3893886498127	503	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	-14	True	NA	NA	False	NA	NA	NA	34687431	34663256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34684048_34684132_34687243
30183	chr9	+	1819	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	2	0	-2	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	968	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTTAATTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	35179160	35187259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
30185	chr14	+	1046	5	NNC	ENSMUSG00000021832.9	novel	812	8	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	815.518355096929	8	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAGGACTAACCATAAAT	NA	False	NA	NA	False	NA	NA	NA	45567284	45587150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567561_45568286_45568367_45568443_45568475_45586190_45586767_45587067
30186	chrX	-	2354	7	ISM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	50	4	50	-4	intron_retention	FALSE	canonical	3	2622	junction_2	169.828099363248	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGTGTTTGTGTCTAAC	NA	False	NA	NA	False	NA	NA	NA	72759731	72729787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398
30187	chr2	-	1676	1	Antisense	novelGene_ENSMUSG00000064193.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	75	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTCTAGAAAATATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	80669117	80667441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_80667400_80669100
30188	chr1	+	912	1	NIC	ENSMUSG00000042251.13	novel	6900	13	NA	NA	11	-14085	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCTTCTCTTTCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	131725146	131726058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_131725100_131726100
30190	chr7	-	1807	11	NNC	ENSMUSG00000102252.6	novel	2076	11	NA	NA	851	-613	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_10	807.123466391605	28	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGGGTTTTTCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	59654008	59632862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59652987_59653068_59653517
30191	chr14	+	2038	13	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	790.798800615906	1	82	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290415_30291880_30292070_30292159_30292291_30292919_30293004_30293108_30293199_30294164_30294288_30295293
30192	chr4	-	2931	3	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9902	1549	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_2	141	129	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAATAAGCCAATAGTGT	NA	False	NA	NA	False	NA	NA	NA	101760888	101745667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101747741_101747885_101748198_101760342
30193	chr10	-	3021	13	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-5	-21	intron_retention	FALSE	canonical	3	111	junction_12	34.2502027569019	76	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAAACTTGATTTGAAGC	NA	False	NA	NA	False	NA	NA	NA	79390930	79376100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79377034_79377347_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
30194	chr6	-	3568	23	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	69	209	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	191.650901854957	1	154	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTCCTTTAAACACAGG	100	False	NA	NA	False	NA	NA	NA	29609741	29541360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541852_29543254_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565658_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
30195	chr1	+	1588	13	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	566.691782531641	30	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724176	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742111_59744855_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
30196	chr2	-	2948	6	FSM	ENSMUSG00000085385.8	ENSMUST00000133449.8	933	6	38	-2053	0	-12	multi-exon	FALSE	canonical	2	8	junction_3	32.8048776861003	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGCATCAAGCTTGGTC	8327	False	NA	NA	False	NA	NA	NA	158203462	158195631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_158197962_158199117_158199184_158201101_158201252_158202383_158202520_158202862_158202991_158203324
30199	chr9	-	2726	8	NIC	ENSMUSG00000032366.16	novel	887	9	NA	NA	-13	0	intron_retention	FALSE	canonical	3	256	junction_1	130.784134343269	86	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	66951202	66935173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
30200	chr4	+	3020	17	NIC	ENSMUSG00000041143.17	novel	3318	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	17.3561048337465	165	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAAGGGTTCTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	138700215	138786478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_138700301_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
30201	chr2	-	2794	4	NIC	ENSMUSG00000027341.11	novel	1612	4	NA	NA	-4	-3	combination_of_known_junctions	FALSE	canonical	3	26	junction_2	270.241044666095	23	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAGTGTGTGTGTTGTTA	4914	False	NA	NA	False	NA	NA	NA	132089683	132081416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132082547_132085938_132087293_132087875_132087995_132089492
30202	chr12	+	4691	34	NIC	ENSMUSG00000012609.20	novel	5081	34	NA	NA	-9	-29	combination_of_known_junctions	TRUE	canonical	1	3	junction_20	10.9113633996705	1	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAGATTAATAAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	85871785	86100504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020_85892128_85896024_85896156_85904153_85904237_85910337_85910408_85911298_85911384_85923264_85923367_85925160_85925253_85926141_85926250_85935932_85936015_85937794_85937857_85938889_85938985_85945766_85945881_85946166_85946259_85955566_85955630_85959325_85959365_85964448_85964549_85965704_85966012_85969731_85969853_85972413_85972561_85973575_85973680_85976637_85976766_85979498_85979583_85980055_85980449_85986099_85986285_86003339_86003495_86042774_86042971_86059421_86059637_86067294_86067378_86070993_86071117_86099916
30205	chr6	-	4285	1	Intergenic	novelGene_4157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	85	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGGTCTGCTAGTGTA	NA	False	NA	NA	False	NA	NA	NA	47167374	47163089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_47163100_47167400
30206	chr19	-	3354	4	NNC	ENSMUSG00000024944.7	novel	2305	4	NA	NA	10	0	intron_retention	FALSE	non_canonical	0	0	junction_1	357.114360767901	136	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGGCTGAGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	6191160	6184415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6186504_6186609_6187671_6187759_6187871_6191066
30207	chr2	-	3378	15	NNC	ENSMUSG00000027086.17	novel	2865	14	NA	NA	284	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	75.3197605315538	1	87	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACACTGTATACATAATAAA	7357	False	NA	NA	False	NA	NA	NA	69543558	69517212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470_69543147_69543187
30209	chr17	-	1783	12	NIC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-110	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	183.392186897032	2389	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGCGAGTCATCACTG	NA	False	NA	NA	False	NA	NA	NA	57318398	57310401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57318108
30210	chr10	-	1472	7	ISM	ENSMUSG00000019795.18	ENSMUST00000161123.8	2607	9	-21	10054	18	232	5prime_fragment	FALSE	canonical	3	19	junction_4	329.199365464489	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAAGACTCTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	7539049	7515190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524425_7524814_7524920_7538838
30211	chr15	-	1881	8	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-93	-774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	911.893701288138	2	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGAAGGATTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	81283888	81248643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81261949_81276453_81276524_81283685
30212	chr18	+	2365	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	4	-7	0	-1	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	428	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTGTCCTGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	36812635	36816913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
30213	chr17	+	2591	10	NIC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	50	-2	intron_retention	FALSE	canonical	3	220	junction_5	34.1947942034644	3	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTCTTTTATTTTGTTG	9300	False	NA	NA	False	NA	NA	NA	57071833	57076838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57071942_57072524_57072793_57073781_57074675_57074782_57074936_57075033_57075151_57075347_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
30214	chr2	+	4819	7	NIC	ENSMUSG00000027281.17	novel	4906	8	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	8.41955396021006	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAAGTTTGTTGTGCAA	9757	False	NA	NA	False	NA	NA	NA	136733533	136913867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_136733582_136747462_136747521_136842103_136842194_136885919_136885998_136888636_136888726_136908049_136908151_136909512
30216	chr11	-	2724	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	763	-96	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.98484809835	2	102	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACCATTTTGACGGAGT	NA	False	NA	NA	False	NA	NA	NA	11758162	11750383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11752583_11752799_11753064_11756095_11756216_11758021
30217	chr8	+	2413	8	NIC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	-3	168	intron_retention	FALSE	canonical	3	1933	junction_4	91.1370351924697	13	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCATGCGTCATCGTGC	NA	False	NA	NA	False	NA	NA	NA	95584125	95590537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
30218	chr5	-	2200	6	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	1	-529	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3231.3420988809	1	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTAGTTAAATGACT	6765	False	NA	NA	False	NA	NA	NA	148989849	148984040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985092_148985199_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
30220	chr17	-	4180	26	NIC	ENSMUSG00000040356.17	novel	3951	28	NA	NA	1	-2	intron_retention	FALSE	canonical	3	90	junction_18	15.556349186104	73	59	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGCTTGGAGTATGGTAA	5306	False	NA	NA	False	NA	NA	NA	35069185	35058221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
30221	chr12	-	1767	12	FSM	ENSMUSG00000005656.10	ENSMUST00000218934.2	1441	12	-20	-306	-18	5	multi-exon	FALSE	canonical	2	4	junction_10	317.445589793493	18	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAGGTCTTTTCTTTATC	NA	False	NA	NA	False	NA	NA	NA	54842287	54793128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830799_54830905_54842238
30222	chr11	-	2375	3	NIC	ENSMUSG00000004394.13	novel	886	4	NA	NA	15	-3	intron_retention	FALSE	canonical	3	480	junction_1	38	812	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTAAATTCTCCCTTTGT	5358	False	NA	NA	False	NA	NA	NA	6224850	6220371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6221801_6223740_6224234_6224397
30223	chr7	+	3397	6	FSM	ENSMUSG00000066979.7	ENSMUST00000207442.2	3414	6	21	-4	21	4	multi-exon	FALSE	canonical	3	1325	junction_5	59.7146548177246	3	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAAAAGTTGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	131162459	131172897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233
30224	chr9	-	2214	11	FSM	ENSMUSG00000032786.17	ENSMUST00000141118.9	3399	11	730	455	-54	14	multi-exon	TRUE	canonical	3	139	junction_7	18.0612845611822	509	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTTAGGTGTTTCTGC	8508	False	NA	NA	False	NA	NA	NA	106125123	106111111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115439_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
30226	chr2	+	3086	22	NIC	ENSMUSG00000027006.14	novel	4042	23	NA	NA	245	-628	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	63.92824776011	3	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTACTACTGTATAGAC	NA	False	NA	NA	False	NA	NA	NA	80146054	80183759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
30227	chr5	+	1726	7	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	4763	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1515.57397451336	1	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	5519	False	NA	NA	False	NA	NA	NA	77104386	77115356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77104582_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112401_77114494
30228	chr13	-	3411	10	NNC	ENSMUSG00000025450.5	novel	2659	2	NA	NA	-2408	10959	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAACACAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	119615705	119599380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119599655_119602192_119602484_119602607_119602839_119603400_119603491_119606048_119606696_119608672_119608774_119610363_119610490_119611366_119611461_119612471_119612542_119614218
30229	chr2	-	2282	10	NIC	ENSMUSG00000010914.11	novel	2506	11	NA	NA	-24	-116	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	106.464391543213	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTTAGCATACATTGTAAA	NA	False	NA	NA	False	NA	NA	NA	102903831	102851535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102903634
30230	chr3	+	2920	6	NIC	ENSMUSG00000091512.6	novel	1295	7	NA	NA	9	-4	intron_retention	FALSE	canonical	3	124	junction_3	79.1267337882716	18	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAATGAGCTCTGTATAG	89	False	NA	NA	False	NA	NA	NA	137624295	137634522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137632704_137633107_137633172_137633707
30232	chr12	+	1504	9	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-12	-1692	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1921.96198177149	1	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTAGGCTTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	78908846	78932092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78911706_78911752_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
30233	chr17	+	2158	15	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-64	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	343.702447545809	1	94	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCCATCTACTTACCAC	NA	False	NA	NA	False	NA	NA	NA	21165684	21186046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182935_21185464_21185593_21185716
30234	chr16	-	2855	17	NNC	ENSMUSG00000012114.18	novel	3410	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	72.9228777116619	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCAGGAGTTTATTGCA	NA	False	NA	NA	False	NA	NA	NA	17540779	17469084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240_17481361_17489408_17489538_17492451_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
30235	chrX	+	4003	21	FSM	ENSMUSG00000036769.15	ENSMUST00000101670.3	4002	21	-37	36	8	-1	multi-exon	FALSE	canonical	3	24	junction_1	11.664475984801	65	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGAAAAATAAATGATTGT	NA	False	NA	NA	False	NA	NA	NA	23559297	23672228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_23559509_23559663_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
30236	chrX	-	2297	14	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	-10	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	255.18003854339	1	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGTGTTTGTGAGATGA	NA	False	NA	NA	False	NA	NA	NA	95000502	94978933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984245_94984467_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
30238	chr9	-	3478	2	Antisense	novelGene_ENSMUSG00000033491.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGGGCGATGACGCTGA	NA	False	NA	NA	False	NA	NA	NA	86640496	86625667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_86625858_86637208
30239	chr3	+	2697	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	5	35	5	5	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	982	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTGTTGTTTATTAGAA	NA	False	NA	NA	False	NA	NA	NA	157240029	157253978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
30240	chr9	+	1012	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	20	711	2	-315	5prime_fragment	FALSE	canonical	3	16882	junction_3	1479.39201511128	31	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCTGAACCCTTACGCC	NA	False	NA	NA	False	NA	NA	NA	64080676	64085237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178
30243	chr9	+	3462	6	NIC	ENSMUSG00000032425.16	novel	3472	6	NA	NA	-9	-8	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	4.17612260356422	87	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATCCACTTCAGTTTGA	NA	False	NA	NA	False	NA	NA	NA	88430128	88453106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_88430562_88434714_88434915_88436428_88436598_88449211_88449339_88449560_88449654_88450666
30244	chrX	-	985	2	Antisense	novelGene_ENSMUSG00000031353.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAACCCGCGCCTCTCAG	1466	False	NA	NA	False	NA	NA	NA	161545284	161543432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_161543704_161544570
30245	chr13	+	2075	10	FSM	ENSMUSG00000021218.11	ENSMUST00000059515.8	2077	10	4	-2	0	2	multi-exon	FALSE	canonical	0	0	junction_1	614.94494383694	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTATTGAGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	3588133	3615822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
30246	chr11	+	3799	4	FSM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	-3187	0	3187	multi-exon	FALSE	canonical	3	87	junction_3	12.3917535302941	576	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCCGTGCTGATTTGCT	NA	False	NA	NA	False	NA	NA	NA	97489336	97516906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97489494_97505749_97505855_97509262_97509326_97513432
30247	chr4	+	2814	7	NIC	ENSMUSG00000028601.19	novel	893	9	NA	NA	71	0	intron_retention	FALSE	canonical	3	713	junction_3	43.8583578757294	2	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTGCTGGAATTGTT	NA	False	NA	NA	False	NA	NA	NA	108022785	108036503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108031372_108034269_108034321_108035567_108035616_108036103
30250	chr16	-	819	1	Intergenic	novelGene_3872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGGATACACTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	94477590	94476771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_94476800_94477600
30251	chr2	-	3016	4	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	2	2339	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	72.0755776174488	19	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGATGGTCTTTCGTGTT	NA	False	NA	NA	False	NA	NA	NA	156681810	156672629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156675347_156679742_156679834_156680337_156680454_156681718
30254	chr4	+	2754	21	NNC	ENSMUSG00000028576.13	novel	549	4	NA	NA	-11212	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	56.4463240610051	6	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTTCCTGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	94491515	94581470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_94492167_94502197_94502319_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
30255	chr14	+	2340	10	NNC	ENSMUSG00000036023.7	novel	2173	15	NA	NA	0	7	intron_retention	FALSE	non_canonical	0	0	junction_5	261.089360796237	1	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAGGGGAGAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51045381	51057200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51053130_51053325_51053757_51054429_51054928_51056666_51056731_51056810_51056946_51057117
30257	chr13	+	2314	20	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	12747	1149	-74	21	3prime_fragment	FALSE	canonical	3	649	junction_3	69.2917873961555	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTGACAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59745855	59782587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
30258	chr6	+	4240	26	NIC	ENSMUSG00000030231.12	novel	7382	31	NA	NA	47	-6	combination_of_known_junctions	FALSE	canonical	3	61	junction_24	11.9895954894233	106	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAATCACTGGTGTTAGA	NA	False	NA	NA	False	NA	NA	NA	140369826	140542830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525155_140525203_140527693_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371_140535482_140537353_140537491_140539280_140539384_140541974
30259	chr10	-	2937	13	NNC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-3	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	121.17924625208	5	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCTCCAGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	81332179	81322292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323593_81323680_81323735_81324028_81324193_81324261_81324303_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
30260	chr2	-	1708	4	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_3	639.506233137897	851	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCGCCTGTCCAATTC	NA	False	NA	NA	False	NA	NA	NA	25114669	25112173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25113381_25113945_25114057_25114135_25114245_25114388
30261	chr18	-	1994	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	39	-1	-3	1	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	761	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTAGTTAGGCCATGT	NA	False	NA	NA	False	NA	NA	NA	38088030	38070023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
30262	chr17	+	2245	13	NNC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	9	-10	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	81.9537047498295	403	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTACCACCACTGCCTGGC	9232	False	NA	NA	False	NA	NA	NA	57071765	57077082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57071909_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
30263	chrX	-	4080	7	Antisense	novelGene_ENSMUSG00000000037.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCTTTTTCCAGGTGTA	NA	False	NA	NA	False	NA	NA	NA	160039997	160014943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_160017691_160020473_160020752_160022743_160022859_160024981_160025185_160026354_160026543_160029250_160029358_160039555
30264	chr8	+	2721	8	NNC	ENSMUSG00000001482.16	novel	3127	12	NA	NA	7075	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	102.321422338569	56	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	124180995	124190009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124181171_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
30265	chr7	-	3036	6	NNC	ENSMUSG00000062040.15	novel	3845	5	NA	NA	-16	135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.6533290294809	4	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATGGGATTATGGGGCA	NA	False	NA	NA	False	NA	NA	NA	29605973	29593368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29593500_29593657_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605634
30266	chr6	-	3642	19	FSM	ENSMUSG00000030309.17	ENSMUST00000111569.9	3697	19	55	0	-20	0	multi-exon	FALSE	canonical	3	65	junction_10	9.04805415272352	89	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	148797680	148743989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
30267	chr11	-	4276	17	NIC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	19	-10	intron_retention	FALSE	canonical	3	54	junction_12	12.2421850071791	133	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACACAATCTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	115824284	115783430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115783985_115784085_115784546_115784772_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614
30268	chr17	+	1389	10	ISM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	83	1659	-10	676	5prime_fragment	FALSE	canonical	3	3235	junction_8	157.964443569111	3	17	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAGGCTGCTTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	13135351	13142295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104
30269	chr4	-	1713	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGAACTTCTTTTTGTG	2	True	NA	NA	False	NA	NA	NA	41098180	41092729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093475_41093515_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
30270	chr15	+	2325	17	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	-6005	-346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	493.167932224917	1	97	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGGACCCTGCTGGATG	1162	False	NA	NA	False	NA	NA	NA	81773501	81798988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81773636_81779370_81779630_81783329_81783419_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
30272	chr3	+	2433	6	Antisense	novelGene_ENSMUSG00000028107.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACAGCAGGAGCACCTG	2579	False	NA	NA	False	NA	NA	NA	95648237	95655118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_95648746_95649382_95649461_95649630_95649995_95653101_95653173_95653342_95653483_95653846
30273	chr19	+	2665	9	NNC	ENSMUSG00000024740.11	novel	1380	11	NA	NA	-17	609	intron_retention	FALSE	canonical	0	0	junction_2	1086.64135642815	2	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCCCCCCTCAGCAAAAA	649	False	NA	NA	False	NA	NA	NA	10582969	10593781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585162_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215
30274	chr4	-	2226	8	NNC	ENSMUSG00000028851.7	novel	1316	8	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1312.60131193049	861	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCACCTGTGTCCCTCG	4462	False	NA	NA	False	NA	NA	NA	133273305	133259859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133262404_133262451_133262887_133262978_133263183_133268449_133268528_133273115
30275	chr2	+	2792	5	NIC	ENSMUSG00000027628.11	novel	2766	5	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	64.3481740222673	321	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAATCCCCCTGTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	156389507	156410073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_156389804_156391771_156391948_156392568_156393370_156397746_156397977_156408784
30276	chr10	+	2015	7	NNC	ENSMUSG00000006732.15	novel	1791	6	NA	NA	-10	1087	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	150.543090914934	718	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTGTCTGAGAACAG	NA	False	NA	NA	False	NA	NA	NA	126877815	126883321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147_126882398_126883245
30277	chr2	+	1826	5	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	227	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	772.677932582522	5	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACCCTTTCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	143757466	143785240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780613_143781871_143781949_143782048_143782195_143784046
30278	chr11	-	1916	8	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-24	2	intron_retention	FALSE	non_canonical	0	0	junction_4	696.986252902232	5	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3755	False	NA	NA	False	NA	NA	NA	120463691	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453562_120458823_120458882_120458999_120459134_120462346_120462554_120463482
30279	chr15	-	3198	16	NNC	ENSMUSG00000009733.10	novel	3302	16	NA	NA	13	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	30.0330188662782	3	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGAGAGTTTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	100449876	100400684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420343_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
30280	chr14	-	1775	9	NIC	ENSMUSG00000021273.12	novel	3698	10	NA	NA	-47	-1258	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	368.754999966102	113	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCAACTGGTCCTTGTC	4260	False	NA	NA	False	NA	NA	NA	63415293	63383859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63396686_63396809_63400750_63400935_63401980_63402079_63415131
30281	chr6	-	1911	6	FSM	ENSMUSG00000023456.17	ENSMUST00000149610.3	802	6	-569	-540	515	-127	multi-exon	FALSE	canonical	3	1828	junction_3	42.3112278243022	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTTTGTGGGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	124790602	124787681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752
30282	chr5	+	1980	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-167	0	intron_retention	FALSE	non_canonical	0	0	junction_8	1084.55647616895	1	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	589	False	NA	NA	False	NA	NA	NA	77099456	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114173_77114613
30283	chr4	-	2035	11	NNC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	163.065508308778	891	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	NA	False	NA	NA	NA	120682884	120614634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625289_120625412_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
30284	chr8	-	2132	15	NNC	ENSMUSG00000031948.15	novel	2131	15	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	676.582875747755	1	87	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACCCATGCAGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	112737907	112720079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728506_112729129_112729237_112729913_112730073_112732263_112732426_112734838_112735019_112737841
30285	chr11	-	1680	9	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1395.99981532055	4	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTGAAGACTGAATTAAGT	9654	False	NA	NA	False	NA	NA	NA	106679320	106672385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675753_106677280_106677371_106677734_106677901_106679098
30286	chr2	+	3552	1	NIC	ENSMUSG00000069020.10	novel	2196	5	NA	NA	-215	-18	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	31	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACTACCTCCGAAGCATT	7416	False	NA	NA	False	NA	NA	NA	29731444	29734996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29731400_29735000
30287	chr1	+	2206	14	ISM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	15	741	15	-12	5prime_fragment	FALSE	canonical	3	546	junction_5	45.0821734931215	78	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTGCACATGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	131080932	131099235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673
30288	chr11	+	2702	3	ISM	ENSMUSG00000020812.19	ENSMUST00000239363.2	1631	4	66	-5	1	0	intron_retention	FALSE	canonical	3	180	junction_1	1	61	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	116562495	116566624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_116563565_116564763_116564898_116565125
30290	chr15	-	2998	6	FSM	ENSMUSG00000053411.17	ENSMUST00000109615.8	710	6	12	-2300	12	0	multi-exon	FALSE	canonical	3	216	junction_5	106.136892737634	525	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGACTTCTGTGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	79816729	79800010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
30291	chr5	+	2046	10	NIC	ENSMUSG00000029466.12	novel	2751	11	NA	NA	-17	-460	combination_of_known_splicesites	FALSE	canonical	1	4	junction_8	88.9181896151988	60	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGAGACTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	122560526	122582515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122579352_122579504_122581866
30292	chr11	+	2300	3	NIC	ENSMUSG00000017404.13	novel	751	6	NA	NA	-2	-21	intron_retention	FALSE	canonical	3	9068	junction_1	2439.5	12	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTCTTGTTTAG	NA	False	NA	NA	False	NA	NA	NA	97917780	97921297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97917817_97918648_97920712_97921096
30293	chr17	+	2479	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	-106	0	-42	0	multi-exon	FALSE	canonical	3	371	junction_2	28.8962896503263	390	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	NA	NA	NA	56980251	57018764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
30295	chr4	-	2588	16	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	2565	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	98.2874695302848	2	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTACCTGACTTGTCTTT	4115	False	NA	NA	False	NA	NA	NA	41120189	41114432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114744_41115101_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006
30296	chr7	-	4145	6	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	1	194	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	18.9166593245213	173	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCCCTGGCTGTCCTGG	NA	False	NA	NA	False	NA	NA	NA	27678595	27660591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
30297	chr13	+	3577	9	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	2277	39879	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	149	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCACTTCCGGCGGAGCCG	NA	False	NA	NA	False	NA	NA	NA	59782815	59823615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59785216_59786118_59786226_59787932_59788149_59790044_59790201_59792905_59793040_59797378_59797528_59812001_59812192_59813340_59813489_59823538
30298	chr9	+	2933	14	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	40	-8760	combination_of_known_junctions	FALSE	canonical	3	112	junction_1	79.5849440133589	6	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACCCCTCTTCTCACTT	NA	False	NA	NA	False	NA	NA	NA	114230215	114294685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111
30299	chr16	-	3088	9	NIC	ENSMUSG00000022751.10	novel	1286	10	NA	NA	-14	0	intron_retention	FALSE	canonical	3	677	junction_2	39.2364626336269	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGATGTTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	56987718	56977027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56986580_56987643
30300	chr2	+	2236	1	NIC	ENSMUSG00000027282.18	novel	2596	13	NA	NA	-18	1134	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATGGTAGGTGCCTTTG	154	False	NA	NA	False	NA	NA	NA	90677556	90679792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90677600_90679800
30301	chr2	-	2756	13	Antisense	novelGene_ENSMUSG00000074698.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	111	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCAGCCTCCGCTGCCGG	NA	False	NA	NA	False	NA	NA	NA	152122359	152068795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152068908_152092317_152092531_152096128_152096240_152099295_152099399_152099859_152099910_152100593_152100656_152102678_152102761_152105100_152105215_152114545_152114649_152116016_152116112_152117315_152117465_152118862_152118950_152120884
30302	chr11	-	2420	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-16392	-263	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	221.232908944397	1	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTCAAGACCCCAGAGGC	NA	False	NA	NA	False	NA	NA	NA	113472997	113135941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450374_113452831_113452944_113472909
30303	chr8	-	1696	5	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	300.648777645944	58	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	65186627	65171172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_65172216_65173375_65173531_65175497_65175625_65180657_65180943_65186541
30305	chr13	+	2646	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	54	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	82.2070556582584	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGACCTCTTCCTATAC	NA	False	NA	NA	False	NA	NA	NA	97619262	97633524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97630912_97633232_97633304
30306	chr15	+	2060	10	NNC	ENSMUSG00000022385.12	novel	2641	12	NA	NA	-18	18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	195.197019811292	205	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATGCTTGGAGTTTACA	7119	False	NA	NA	False	NA	NA	NA	85743927	85760749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85760506
30307	chrX	+	2344	1	FSM	ENSMUSG00000051582.3	ENSMUST00000060241.3	873	1	-105	-1366	-105	1366	mono-exon	FALSE	NA	NA	NA	NA	NA	223	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGGTTTGCATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	99472513	99474857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99472500_99474900
30309	chr15	-	1424	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	766.930258128686	22	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	2663	False	NA	NA	False	NA	NA	NA	43146115	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43128967_43129561_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
30312	chr7	+	2199	11	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	3	544	intron_retention	FALSE	canonical	3	293	junction_1	16.6796282932204	636	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGCATAGCCTCTGG	6883	False	NA	NA	False	NA	NA	NA	140711271	140736059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734910_140735246
30315	chr1	+	2352	2	NNC	ENSMUSG00000067017.6	novel	2858	2	NA	NA	429	-19	intron_retention	FALSE	canonical	0	0	junction_1	0	1	86	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTTGTCATTCATACT	NA	False	NA	NA	False	NA	NA	NA	105384124	105386535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_105384177_105384235
30316	chr1	-	2747	8	NIC	ENSMUSG00000026047.14	novel	2085	9	NA	NA	0	-1	intron_retention	FALSE	canonical	3	275	junction_4	38.4075885358982	28	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTCTGTTTTGTTACAGT	NA	False	NA	NA	False	NA	NA	NA	44157925	44146045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_44146265_44146924_44147033_44149153_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
30319	chr9	+	2355	12	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	157	-14	intron_retention	FALSE	canonical	3	5	junction_8	491.519973447184	2	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTTTCTCTAATGAGTT	NA	False	NA	NA	False	NA	NA	NA	59446979	59472378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468396_59469225_59469310_59470149_59470334_59470506_59471271_59472103
30320	chr14	+	4706	23	NIC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	-25	182	combination_of_known_splicesites	FALSE	canonical	1	2	junction_16	41.119484231579	1	79	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACTTGTGACTTTCTGC	NA	False	NA	NA	False	NA	NA	NA	57125250	57197991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
30321	chr2	+	1499	6	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-11	-6	intron_retention	FALSE	canonical	3	2861	junction_1	840.897853487568	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26800843_26801017_26801139_26801433_26802172_26802377_26802458_26802682_26803070_26803176
30322	chr12	+	3428	5	NIC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	283	0	intron_retention	FALSE	canonical	3	19	junction_1	204.980944236287	7	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	4130	False	NA	NA	False	NA	NA	NA	87204664	87211497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_87204719_87206413_87206495_87206823_87208328_87208813_87208867_87209761
30323	chr3	+	3928	23	NNC	ENSMUSG00000039234.12	novel	3649	20	NA	NA	-2656	0	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_1	16.1403964230813	73	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTACTGTGTTTTATGTCT	NA	False	NA	NA	False	NA	NA	NA	123058447	123159290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_123058555_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
30325	chr15	+	2663	6	NNC	ENSMUSG00000033669.9	novel	2772	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	35.4208977864763	23	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	NA	NA	NA	76763521	76776595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772548_76774206_76775335_76775380
30326	chr8	-	3261	9	ISM	ENSMUSG00000031537.16	ENSMUST00000125314.8	3536	22	36264	7	-1250	-7	intron_retention	FALSE	canonical	3	43	junction_1	15.1058763400208	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTCACCCATGAGTCAT	5655	False	NA	NA	False	NA	NA	NA	23160292	23149235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960
30328	chr6	-	2201	3	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-41	2155	multi-exon	TRUE	non_canonical	0	0	junction_1	220.5	11	53	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACTTGAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	48502065	48499332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_48500376_48500855_48501909_48501960
30329	chr11	+	1185	1	Antisense	novelGene_ENSMUSG00000018537.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCGGAGGAACTTTGC	7023	False	NA	NA	False	NA	NA	NA	97581349	97582534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_97581300_97582500
30331	chr1	+	2577	3	ISM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	10037	4	-936	-4	3prime_fragment	FALSE	canonical	3	422	junction_1	5.5	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATTGTTTTGGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	180688728	180695674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_180688784_180689922_180690407_180693636
30332	chr12	+	3743	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	8	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	313.745517896272	1	193	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCTAATAAATAAGGAAAGG	NA	False	NA	NA	False	NA	NA	NA	86516898	86568374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86516938_86517057_86517330_86535320_86535430_86552588_86552700_86553122_86553285_86561054_86561325_86565594
30333	chr5	+	4881	35	NIC	ENSMUSG00000056602.14	novel	592	4	NA	NA	-46	4817	combination_of_known_junctions	FALSE	canonical	3	8	junction_34	4.00043250256925	62	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCAGACCCTGAGGAGAG	1229	False	NA	NA	False	NA	NA	NA	150119884	150341970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817_150263958_150269017_150269109_150269315_150269396_150269510_150269592_150277938_150278108_150282263_150282357_150282454_150282554_150284579_150284682_150292933_150293038_150293591_150293701_150295986_150296074_150302273_150302446_150304262_150304396_150305080_150305189_150309449_150309709_150312237_150312421_150314100_150314188_150317442_150317703_150318452_150318643_150319207_150319333_150321662_150321721_150322663_150322756_150322996_150323170_150324257_150324419_150325064_150325176_150326906_150327062_150328407_150328508_150328714_150328887_150336648_150336906_150337968_150338116_150339652_150339822_150341926
30334	chrX	-	4122	5	Antisense	novelGene_ENSMUSG00000106264.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGGCGCGGCTACGTCAT	NA	False	NA	NA	False	NA	NA	NA	134666050	134643455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_134643726_134645245_134645323_134649402_134649530_134652691_134652765_134662475
30335	chr2	-	1683	16	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	97.3173502858903	1897	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	164699561	164681440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686382_164686526_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
30336	chr7	-	2385	9	NIC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	-29	-3	intron_retention	FALSE	canonical	3	1616	junction_4	183.33980575696	83	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAAAACTGTCTTGATGTG	NA	False	NA	NA	False	NA	NA	NA	79765109	79744600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
30338	chr19	-	2107	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	60	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1113.93019726328	1	97	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGCCTGTGAATTATT	NA	False	NA	NA	False	NA	NA	NA	15902363	15882489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886666_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
30339	chr1	+	1401	10	Antisense	novelGene_ENSMUSG00000098288.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	430	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGCAACCTCAAGGCCAT	NA	False	NA	NA	False	NA	NA	NA	92367207	92401439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_92367632_92379734_92379841_92388100_92388182_92390006_92390070_92390801_92390880_92392082_92392203_92395100_92395192_92397586_92397805_92398542_92398707_92401383
30340	chr6	+	2167	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	34	285	21	-285	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCCCTCATTGCCACAG	NA	False	NA	NA	False	NA	NA	NA	85409004	85423132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
30341	chr8	-	1758	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	11	3	11	-3	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	3	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43760006	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
30342	chr19	+	1350	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	155	-300	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2928.14560624263	4	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTCCTGTCCTGCC	998	False	NA	NA	False	NA	NA	NA	8944559	8955543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8955007_8955074_8955307
30344	chr15	-	3043	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	749	6	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	187.55147441584	13	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79815968	79800001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79802252_79802440_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79815662
30345	chr9	-	1572	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	64	296	0	-296	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCTACAACAGGACTACT	NA	False	NA	NA	False	NA	NA	NA	110775162	110768966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
30346	chr11	+	3473	19	NNC	ENSMUSG00000084936.2	novel	466	2	NA	NA	543	20141	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	163	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAAAACCTAGAGGGGCG	1491	False	NA	NA	False	NA	NA	NA	97052358	97072642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97053508_97054178_97054343_97054747_97054853_97055549_97055657_97055778_97055923_97056208_97056310_97056871_97056958_97058377_97058523_97059692_97059765_97059976_97060122_97060727_97060856_97062345_97062542_97063880_97064107_97066577_97066676_97068070_97068183_97069095_97069181_97069688_97069754_97071269_97071422_97072449
30347	chr5	+	4804	9	Intergenic	novelGene_773	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	17.4315626092442	91	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAATAAAAAAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	104757285	104792943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104757425_104783724_104783852_104784093_104784155_104785404_104785707_104785959_104786784_104786937_104787423_104787506_104788020_104789954_104790441_104791076
30348	chr2	-	3316	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	-4	-6	intron_retention	FALSE	canonical	3	483	junction_1	60.3850974993003	65	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAGGGAAAGGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	152174336	152158259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
30349	chr10	+	4560	20	FSM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-79	-730	56	419	multi-exon	FALSE	canonical	3	64	junction_16	12.5742118370934	62	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTACTTGGGTTCCAC	NA	False	NA	NA	False	NA	NA	NA	69761704	69861203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397_69851484_69859661
30351	chr5	+	877	8	ISM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	178	700	-4	-700	5prime_fragment	FALSE	canonical	3	4702	junction_3	266.770481492834	41	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGGAAGGAAGGAGTCGTT	631	False	NA	NA	False	NA	NA	NA	135807511	135818545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479
30352	chr6	-	2430	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	131	-5	131	5	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	1	141	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8616	False	NA	NA	False	NA	NA	NA	145021779	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
30353	chr5	+	1866	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-21	-916	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	374.982999614649	1	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTAAGCAAACGGCGATC	NA	False	NA	NA	False	NA	NA	NA	111478607	111535309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
30354	chr13	-	996	7	FSM	ENSMUSG00000006715.12	ENSMUST00000110382.9	963	7	-33	0	-33	0	multi-exon	FALSE	canonical	3	1483	junction_6	81.6382603658086	6416	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	NA	False	NA	NA	NA	24945939	24935827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
30355	chr10	+	2429	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	20	7	3	-2	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	1	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAATTGTGTCATGTGT	NA	False	NA	NA	False	NA	NA	NA	21870584	21875795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
30356	chr11	-	2098	9	NIC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	16	-5	intron_retention	FALSE	canonical	3	178	junction_7	17.2699160391705	200	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATTCTTATCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	77971193	77964206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
30358	chr3	+	1863	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-7	-79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	691.199232275489	2	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAAAAAGCACTGACACGT	3834	False	NA	NA	False	NA	NA	NA	88204452	88228992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208156_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
30359	chr19	-	4567	1	FSM	ENSMUSG00000074909.6	ENSMUST00000099525.5	4575	1	7	1	7	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	30	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTCCTTCTACTGTGT	NA	False	NA	NA	False	NA	NA	NA	29790367	29785800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_29785800_29790400
30360	chr4	-	2539	13	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	-5	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	373.167820453777	1	108	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779662	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761454_122761590_122763488_122763565_122765189_122765291_122766124_122766250_122779625
30361	chr11	+	1246	3	ISM	ENSMUSG00000078700.11	ENSMUST00000135825.9	2801	6	15922	575	15775	-575	3prime_fragment	TRUE	canonical	1	4	junction_2	6.5	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTACAGGTAACTTCTA	1032	False	NA	NA	False	NA	NA	NA	96850912	96855311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_96851108_96851686_96851823_96854396
30364	chr6	+	1774	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-1	-92	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2401.35980417157	1	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5187	False	NA	NA	False	NA	NA	NA	85429072	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439009_85439184_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
30366	chr18	-	2454	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	136	1	-30	0	multi-exon	FALSE	canonical	3	102	junction_9	76.3322820564839	303	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	NA	False	NA	NA	NA	70663369	70641755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
30367	chr10	+	1518	7	NIC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-30	-25	intron_retention	FALSE	canonical	3	4641	junction_3	428.072586004861	28	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAGACAAAGAGTATGGT	NA	False	NA	NA	False	NA	NA	NA	126899441	126903141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126901134_126901821_126901873_126901969_126902106_126902797
30368	chr3	+	2388	13	NNC	ENSMUSG00000063052.10	novel	2450	13	NA	NA	34	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	351.754284108792	1	76	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATTGGTATAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742420	157772721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157749197_157749328_157754037_157754184_157757333_157757477_157758395_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
30369	chr18	-	2570	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	35	0	-4	0	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	1648	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGCATGGTGGCTTCC	6761	False	NA	NA	False	NA	NA	NA	74340854	74328369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
30370	chr11	-	1384	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	407.70342486252	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTGAGTGCAGATCTTT	NA	False	NA	NA	False	NA	NA	NA	119190834	119179190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184499_119184734_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
30371	chr11	+	2568	8	Antisense	novelGene_ENSMUSG00000065686.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGCCGAGGAGCGCGTGC	3740	False	NA	NA	False	NA	NA	NA	6568094	6575794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_6568213_6568463_6568603_6568994_6569111_6569555_6569709_6569966_6571066_6573815_6574293_6575158_6575213_6575382
30372	chr5	+	3968	24	FSM	ENSMUSG00000029594.13	ENSMUST00000031590.12	4010	24	42	0	-10	0	multi-exon	FALSE	canonical	3	93	junction_16	11.5488606136917	96	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATGTCACTCTGTCAC	NA	False	NA	NA	False	NA	NA	NA	120254571	120337046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_120254715_120256724_120256908_120257696_120257817_120257959_120257996_120258161_120258367_120260957_120261215_120262215_120262297_120262758_120262838_120264238_120264311_120265029_120265231_120266248_120266380_120268774_120268894_120269218_120269316_120270198_120270310_120270906_120271108_120271825_120271947_120278268_120278439_120278601_120278663_120279615_120279696_120281441_120281498_120282061_120282179_120313923_120314030_120324282_120324404_120335946
30373	chr9	+	1726	8	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	62	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTCCAAGGCGACTGCCG	NA	False	NA	NA	False	NA	NA	NA	78385734	78388953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386141_78386238_78386471_78386555_78386816_78386904_78387057_78387133_78387433_78387528_78387689_78387786_78387968_78388917
30374	chr8	+	2107	16	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	5	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	325.348401290405	2	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGTTATTCTTTAGGA	NA	False	NA	NA	False	NA	NA	NA	107620287	107649703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107634847_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
30375	chr11	-	1689	13	NIC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	0	-12	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	249.315730216393	2919	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCCCTTGAATGTTAATG	NA	False	NA	NA	False	NA	NA	NA	59730638	59708632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59726189_59726271_59727716_59727847_59730495
30376	chr3	+	2142	16	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	44	-5826	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	303.770190915582	7	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	NA	False	NA	NA	NA	63883570	63924174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921713_63922845_63923019_63924053
30377	chr17	-	2545	16	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-26	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	283.138803808701	1	104	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTGCATCATCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	28841487	28808590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28809216_28810174_28810268_28811191_28811262_28812872_28812934_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819444_28821652_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
30378	chr15	-	3075	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	7	36	-6	-36	multi-exon	FALSE	canonical	3	163	junction_7	20.0690167197789	6	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTGATTTTAAAATAAATAC	NA	False	NA	NA	False	NA	NA	NA	9140445	9112108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
30379	chr6	-	1118	1	ISM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	48542	5318	32573	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	NA	False	NA	NA	NA	144945996	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_144944900_144946000
30381	chr5	+	1101	3	NNC	ENSMUSG00000029452.19	novel	2221	12	NA	NA	-7134	-30025	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	34	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACGCCGGATGGTGGGAG	NA	False	NA	NA	False	NA	NA	NA	121582821	121590401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121583638_121585205_121585341_121590251
30382	chr5	+	2211	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	363	14	363	-14	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	1	95	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864424	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
30383	chr7	-	4824	12	NIC	ENSMUSG00000030630.17	novel	1585	14	NA	NA	-48	-6	intron_retention	FALSE	canonical	3	98	junction_10	7.20881003694509	2	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAATCTCTGTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	84254985	84234372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84250035_84250240_84250363_84251288_84251400_84254850
30384	chr18	-	3534	20	NNC	ENSMUSG00000041225.17	novel	4162	20	NA	NA	4	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_17	62.7910839340001	1	81	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTGCGTTTTAGTTCT	178	False	NA	NA	False	NA	NA	NA	6135884	6025194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6057516_6057592_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6073210_6073287_6100468_6100609_6115813_6115851_6135803
30385	chr14	+	2432	10	NIC	ENSMUSG00000021975.10	novel	2674	17	NA	NA	56992	-5	intron_retention	FALSE	canonical	3	162	junction_5	28.0475786239502	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTGCCCAGTTCTATT	NA	False	NA	NA	False	NA	NA	NA	65244753	65277276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
30386	chr9	-	3265	1	FSM	ENSMUSG00000032299.11	ENSMUST00000213161.2	437	1	-2835	7	8	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAATGTGTATGGGTCTTG	6300	False	NA	NA	False	NA	NA	NA	57065592	57062327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57062300_57065600
30387	chr6	+	2097	11	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	10	-61	intron_retention	FALSE	canonical	1	1	junction_5	1852.07035773482	1	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCTTAGAATTGGAGTCA	5158	False	NA	NA	False	NA	NA	NA	85429043	85445396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438541_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560
30388	chr7	+	2619	3	Antisense	novelGene_ENSMUSG00000056383.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATCAGAACTTTTCCAGCA	NA	False	NA	NA	False	NA	NA	NA	41022375	41042717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_41024807_41026175_41026297_41042650
30389	chr9	+	2823	8	NNC	ENSMUSG00000032519.12	novel	961	8	NA	NA	3	1592	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	54.4370072202912	271	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTAAAATGTGAACATTC	1763	False	NA	NA	False	NA	NA	NA	119939442	119955162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707_119953780_119954336
30390	chr17	+	2425	6	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	936.481841788724	12	113	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAACTCAGATGCCAGT	NA	False	NA	NA	False	NA	NA	NA	29251646	29260928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29259507_29259949_29260268_29260357
30391	chr4	-	3185	3	FSM	ENSMUSG00000040842.18	ENSMUST00000094549.11	3203	3	4	14	4	-14	multi-exon	FALSE	canonical	3	212	junction_2	123	1038	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTCCTCATTTCTG	NA	False	NA	NA	False	NA	NA	NA	140867082	140840325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_140843176_140845837_140846093_140867002
30392	chr12	+	2927	12	NIC	ENSMUSG00000021222.10	novel	2005	13	NA	NA	68	74	intron_retention	FALSE	canonical	3	216	junction_7	23.4939767206142	10	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGTACTTCTTTGCCTA	NA	False	NA	NA	False	NA	NA	NA	83572915	83588768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
30393	chrX	+	1829	15	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	22	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	205.869187711468	11	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	56454535	56534133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478571_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485303_56513777_56513890_56517713_56517886_56533944
30394	chr13	-	1418	1	FSM	ENSMUSG00000061724.6	ENSMUST00000074863.6	733	1	-7	-678	-7	678	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13407485	13406067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_13406100_13407500
30395	chr4	-	1870	8	NIC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_6	141.225250676256	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5482	False	NA	NA	False	NA	NA	NA	132073015	132059233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132067235_132067318_132072956
30396	chr2	-	587	1	NIC	ENSMUSG00000039873.5	novel	1014	2	NA	NA	2127	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGTTCTGAGCATTGGAG	864	False	NA	NA	False	NA	NA	NA	164673249	164672662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164672700_164673200
30397	chr6	-	3876	3	ISM	ENSMUSG00000030346.17	ENSMUST00000202191.2	518	4	-1338	-1567	-1338	-7	intron_retention	FALSE	canonical	3	195	junction_1	29	5	107	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAATGTGCATGCCTCG	NA	False	NA	NA	False	NA	NA	NA	126906571	126900384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_126902031_126903321_126903481_126904500
30398	chr7	+	3736	5	FSM	ENSMUSG00000030649.19	ENSMUST00000143835.8	818	5	-119	-2799	-21	-4	multi-exon	FALSE	canonical	3	43	junction_1	227.058775430504	100	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGAATAACTTGGTCCA	8251	False	NA	NA	False	NA	NA	NA	101546048	101551048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101546568_101546939_101547025_101547148_101547279_101547760_101547821_101548106
30399	chr19	-	1661	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1678.9086105113	2	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902329	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884408_15886761_15886794_15892227_15892328_15895606_15895767_15896818_15896889_15898299_15898361_15902227
30400	chr3	+	3733	21	NNC	ENSMUSG00000025437.16	novel	3886	24	NA	NA	3	1120	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	120.814103067481	4	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTATTTTGAGACAGG	NA	False	NA	NA	False	NA	NA	NA	152052117	152091011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085251_152086150_152086278_152087351_152087522_152088547_152088630_152089752
30401	chr8	-	2360	11	NIC	ENSMUSG00000057788.14	novel	2137	13	NA	NA	-8	120	intron_retention	FALSE	canonical	3	250	junction_7	21.3906521639711	29	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGAAGTTGTCAGTCTG	9949	False	NA	NA	False	NA	NA	NA	70755121	70746115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
30402	chr3	+	3244	9	NNC	ENSMUSG00000028048.12	novel	1938	12	NA	NA	-2	0	intron_retention	FALSE	non_canonical	0	0	junction_3	131.218091359385	2	55	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	89110240	89115988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89110394_89110498_89110849_89111291_89111479_89111581_89112888_89113098_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
30403	chr1	-	3228	24	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-5	1486	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	255.136577087379	1	102	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATATGTATTTGCATTTT	7882	False	NA	NA	False	NA	NA	NA	84817037	84700498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84700777_84726952_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84792543_84792691_84816949
30404	chr5	+	1506	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	88	11	4	-11	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	1609	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTGCAGCCTTCTT	4634	False	NA	NA	False	NA	NA	NA	29941025	29972090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
30405	chr7	+	2781	2	FSM	ENSMUSG00000100254.2_ENSMUSG00000099481.7	ENSMUST00000143839.2	1031	2	-526	-1224	-523	-17	multi-exon	FALSE	canonical	3	103	junction_1	0	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGTGAACAAGACAGTA	NA	False	NA	NA	False	NA	NA	NA	101729741	101732952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101730818_101731247
30407	chr9	+	2340	8	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	-4	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	151.266085331209	3	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCGGCCTGAGTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	20927276	20940098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066_20939176_20939359
30408	chr9	-	2098	7	NNC	ENSMUSG00000032311.18	novel	2095	9	NA	NA	18028	11251	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1468	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGGCGCGCGCCACTT	NA	False	NA	NA	False	NA	NA	NA	55131717	55116254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_55116472_55116635_55116774_55121190_55121279_55122184_55122282_55125597_55125762_55128303_55128503_55130522
30409	chr11	+	2685	10	ISM	ENSMUSG00000061981.15	ENSMUST00000072289.12	2621	11	36	0	-17	0	intron_retention	FALSE	canonical	3	351	junction_3	24.7346410755402	288	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	105	True	NA	NA	NA	77928792	77951260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_77928939_77940303_77940386_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770
30410	chr7	+	5086	8	FSM	ENSMUSG00000053091.17	ENSMUST00000130161.9	5088	8	-9	11	0	-9	multi-exon	FALSE	canonical	3	20	junction_5	19.3454102556442	40	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGCATAGATGAGCAAGT	NA	False	NA	NA	False	NA	NA	NA	66339696	66366993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359977_66360495_66361620_66361793_66363548
30411	chrX	+	2965	23	NNC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	212	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	158.90485874331	1	98	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTCTACTTTCTC	769	False	NA	NA	False	NA	NA	NA	20484235	20517128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484322_20486212_20486354_20501969_20502146_20505667_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511277_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515956_20516039_20516115_20516401_20516509_20516585_20516716_20516797
30412	chr6	-	1161	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	67	0	67	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471687	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
30413	chr9	-	2549	18	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-370	3	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	40.4225946615201	8	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTGGCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	61844428	61824558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363
30414	chr13	+	2669	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	217	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAGAGGTGTGTACTCT	NA	False	NA	NA	False	NA	NA	NA	68730360	68740451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
30415	chr1	-	2326	14	ISM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	72	1197	72	439	5prime_fragment	FALSE	canonical	3	61	junction_4	44.988887516808	6	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGAGTACTTGAACCCAA	NA	False	NA	NA	False	NA	NA	NA	36722192	36602969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
30416	chr17	-	2227	17	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	626.847466369411	1	56	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAAAGTGGCTTGCCTT	5756	False	NA	NA	False	NA	NA	NA	33904377	33865217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865363_33865480_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889050_33889108_33896247_33896415_33904240
30417	chr13	-	1586	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	-102	-142	-102	142	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGCTTTAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	112731720	112730134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112730100_112731700
30419	chr3	+	2121	8	NIC	ENSMUSG00000027940.19	novel	427	4	NA	NA	-49	-5	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	1164.4209386854	3	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCACGATCAGACCGGCTT	NA	False	NA	NA	False	NA	NA	NA	89987699	90008198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987925_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
30420	chr9	-	2392	22	FSM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	125	1	-2	0	multi-exon	FALSE	canonical	3	126	junction_21	23.0064567492301	348	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTCTGTGCTGGTACT	NA	False	NA	NA	False	NA	NA	NA	107971680	107962612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
30421	chr7	-	1577	15	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	655.932211685423	328	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGTGTCCTCAGAG	-11	True	NA	NA	False	NA	NA	NA	45083699	45071319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079109_45079332_45079389_45080743_45080799_45083675
30423	chrX	-	3057	6	FSM	ENSMUSG00000071708.12	ENSMUST00000127089.2	3053	6	-2	-2	-2	2	multi-exon	FALSE	canonical	3	428	junction_1	22.6680391741324	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGATGGCACTGTTGAGT	NA	False	NA	NA	False	NA	NA	NA	156275042	156241867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
30424	chr12	+	2412	4	NNC	ENSMUSG00000037957.15	novel	2384	3	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	70.476158301151	240	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5373	False	NA	NA	False	NA	NA	NA	110704452	110761462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110704712_110745729_110745913_110746269_110746325_110759547
30426	chr2	+	3253	8	FSM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	45	11	-8	-11	multi-exon	FALSE	canonical	3	42	junction_5	26.8791702981764	141	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAATTGATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	73142989	73168151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
30427	chr14	-	3544	22	NNC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	117	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	49.2901999338997	1	84	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGTGTGAGTCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	70391143	70375617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379293_70379387_70379620_70379808_70379981_70380373_70380445_70380507_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
30428	chr13	+	4967	18	ISM	ENSMUSG00000021470.20	ENSMUST00000095724.11	5879	19	4732	0	80	0	3prime_fragment	TRUE	canonical	3	68	junction_13	17.6264585643995	85	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTTCATCGAATTTAAT	NA	False	NA	NA	False	NA	NA	NA	63967847	64048116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_63967870_63972622_63972743_63982409_63982604_63989237_63989400_63989775_63989984_63992359_63992501_63995154_63995269_63996554_63996675_64000764_64000837_64001441_64001588_64006044_64006141_64013771_64013872_64016839_64016993_64018502_64018584_64019609_64020742_64025192_64025348_64042451_64042634_64046347
30429	chr16	+	1799	9	NNC	ENSMUSG00000002845.15	novel	578	4	NA	NA	-2938	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	324.428897256394	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGCTCTGGAGTGACAT	4132	False	NA	NA	False	NA	NA	NA	38376121	38411747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38376146_38377505_38377590_38384476_38384664_38393415_38393639_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
30430	chr7	-	5615	3	Antisense	novelGene_ENSMUSG00000058638.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCCCGTCGGTCTTGTCCC	NA	False	NA	NA	False	NA	NA	NA	12575612	12568953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_12569090_12569368_12569455_12570219
30431	chr6	-	2548	12	FSM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	62	0	0	0	multi-exon	FALSE	canonical	3	123	junction_10	52.5397920824409	444	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120334328	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
30432	chr3	-	2297	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	10	junction_14	185.097904836873	2	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662174	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658149_95658297_95660318_95660443_95661630_95661828_95662069
30433	chr15	+	2212	7	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	1	-5	intron_retention	FALSE	canonical	3	365	junction_3	15.4209453522005	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAACCCCTTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	102426874	102432104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427038_102427556_102427727_102428909_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
30434	chr6	+	5401	8	Antisense	novelGene_ENSMUSG00000030020.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCATCCTCCGCATGCT	NA	False	NA	NA	False	NA	NA	NA	92350659	92458358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_92353804_92387739_92388613_92393715_92393906_92397124_92397330_92399313_92399448_92402558_92402669_92435447_92435639_92457804
30435	chr19	-	2579	17	FSM	ENSMUSG00000024941.10	ENSMUST00000025890.10	2586	17	7	0	4	0	multi-exon	FALSE	canonical	3	22	junction_5	68.5770552007011	280	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTCCCAGCTCAGTC	9914	False	NA	NA	False	NA	NA	NA	5821422	5808454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809782_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
30437	chr11	+	1448	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	-293	2	-289	1	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	237	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	NA	False	NA	NA	NA	9067813	9086168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
30438	chr5	-	5007	25	NNC	ENSMUSG00000066621.13	novel	5106	25	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	18.5397470916467	4	116	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGTGACTGACAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	144160380	144131263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_144132836_144132949_144133043_144133184_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144153844_144154043_144154227_144155331_144155567_144160312
30439	chr18	-	4010	14	FSM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	-49	4	-49	-4	multi-exon	FALSE	canonical	3	46	junction_13	6.05888266692776	135	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAACGTGCAGTGGTCTT	8	True	NA	NA	False	NA	NA	NA	6490905	6435956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6490462
30440	chr18	+	3640	26	Fusion	ENSMUSG00000117519.2_ENSMUSG00000091165.2	novel	523	3	NA	NA	-6241	14207	intron_retention	FALSE	non_canonical	0	0	junction_1	0	24	7	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGGAGGAACACTGCGCAG	NA	False	NA	NA	False	NA	NA	NA	6207671	6241531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_+_6207827_6208041_6208338_6209000_6209217_6210699_6210805_6211023_6211095_6211190_6211252_6212515_6212619_6213186_6213297_6213392_6213457_6213971_6214088_6214511_6214701_6216219_6216366_6216739_6216948_6220223_6220292_6220800_6220995_6222717_6222872_6223547_6223692_6223970_6224074_6225315_6225443_6225596_6225687_6225769_6225824_6226381_6226429_6226861_6226968_6227586_6227662_6234814_6234903_6240981
30441	chr9	-	3813	14	FSM	ENSMUSG00000032376.13	ENSMUST00000098613.9	2797	14	-21	-995	-21	2	multi-exon	FALSE	canonical	3	10	junction_8	36.8152271043594	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGGTTGAGTGTCGTGT	NA	False	NA	NA	False	NA	NA	NA	66500339	66423513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
30442	chr2	-	3191	6	NIC	ENSMUSG00000026958.14	novel	3017	8	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	252	junction_5	32.0187445100522	3	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTGTCTAGTAGGATC	9006	False	NA	NA	False	NA	NA	NA	25246366	25242305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25244306_25244479_25244647_25244752_25245966_25246040
30443	chr8	+	3230	14	NNC	ENSMUSG00000001482.16	novel	3242	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	119.469339484753	1	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	124169750	124190009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124169791_124172836_124172924_124174055_124174103_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183268_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
30444	chr11	-	3232	9	ISM	ENSMUSG00000020745.16	ENSMUST00000156794.2	7165	10	24845	3566	23698	-3566	3prime_fragment	FALSE	canonical	3	936	junction_4	82.3422734687354	15	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATGCATGGTGAATCC	NA	False	NA	NA	False	NA	NA	NA	74590299	74568341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136
30445	chr1	+	3215	4	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	16	113	intron_retention	FALSE	canonical	2	4	junction_3	32.1074584619974	1	51	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGGACAATTAAAATATCA	NA	False	NA	NA	False	NA	NA	NA	173248179	173289686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173248253_173255324_173255465_173280393_173283182_173289472
30446	chr11	-	2627	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	11	788	11	-788	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	387	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAACAAGACCTTTACAG	NA	False	NA	NA	False	NA	NA	NA	82781429	82768312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
30447	chr3	+	1975	15	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	72	-7086	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	318.956821657153	2	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCAGCCTTCATGCCAG	NA	False	NA	NA	False	NA	NA	NA	63883598	63922914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883725_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845
30450	chr16	-	1434	8	Antisense	novelGene_ENSMUSG00000022841.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAAAAAGAAGGGAATTAC	9514	False	NA	NA	False	NA	NA	NA	20362657	20359081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20359166_20359717_20359860_20359956_20360100_20360494_20360615_20360703_20360849_20360953_20361045_20361388_20361499_20362058
30453	chr11	-	1649	9	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	13771	-2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_8	857.467628762159	39	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	8963	False	NA	NA	False	NA	NA	NA	88832520	88814847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88832324
30454	chr10	+	5282	10	ISM	ENSMUSG00000003226.8	ENSMUST00000003310.7	9608	29	30615	191	30342	-191	3prime_fragment	FALSE	canonical	3	267	junction_1	37.0705033985543	113	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTATTTCAGGTGTAC	NA	False	NA	NA	False	NA	NA	NA	58313358	58329987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_58316642_58318850_58319022_58319718_58319806_58320263_58320443_58321501_58321704_58324394_58324497_58326431_58326578_58328232_58328507_58328623_58328959_58329484
30456	chr3	+	2266	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	0	-284	intron_retention	FALSE	canonical	3	329	junction_1	62.0118716232805	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTGTCTCCTTCCATCT	7052	False	NA	NA	False	NA	NA	NA	108291174	108295211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108293724_108293815_108294053_108294593_108294712_108294914
30458	chr11	+	2027	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	185	119	-11	115	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGTTTCTGTGGACCTTGT	4323	False	NA	NA	False	NA	NA	NA	102321332	102327514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
30459	chr17	+	2832	18	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	33	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	575.748809848116	1	119	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATATTGCAATAAAATAAA	453	False	NA	NA	False	NA	NA	NA	56610353	56630452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629697_56630383
30460	chr2	+	1785	11	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	244	5	-157	1	3prime_fragment	FALSE	canonical	3	1876	junction_8	216.309408024709	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116593	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
30462	chr7	-	1513	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_9	883.118646168156	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875290	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113874858
30463	chr14	-	1865	10	Fusion	ENSMUSG00000091649.4_ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	-3	intron_retention	FALSE	canonical	3	74	junction_1	94.3254151892123	16	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTGAAGAGTCTACCGTT	NA	False	NA	NA	False	NA	NA	NA	59607998	59558415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_59558733_59586670_59586838_59588595_59588668_59590099_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
30464	chr6	-	1334	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	3	-141	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4019.71419226542	4	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAATGTAATTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	87828038	87820204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821026_87822173_87822303_87822446_87822540_87822637_87822776_87827885
30465	chr11	-	1171	9	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6796.73371922131	8	20	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113076	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33110322_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
30466	chr3	-	1160	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	124	5	-43	1	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	2494	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCATGAGTTGTGTCTT	6707	False	NA	NA	False	NA	NA	NA	107925165	107919575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
30467	chr5	+	2639	7	FSM	ENSMUSG00000049327.18	ENSMUST00000199798.5	1789	7	-58	-792	-21	-5	multi-exon	FALSE	canonical	3	73	junction_1	269.798330033544	457	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACCTATGTGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	124577971	124600366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124578079_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
30468	chr8	-	2743	11	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	1	intron_retention	FALSE	canonical	3	191	junction_8	19.2616198695748	2	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTAGCGATATTGTATT	NA	False	NA	NA	False	NA	NA	NA	106578618	106571303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
30470	chr9	+	3947	8	NIC	ENSMUSG00000042787.16	novel	2624	7	NA	NA	4	-13	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	130	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGCTTCTGACCGGTG	NA	False	NA	NA	False	NA	NA	NA	119274029	119294570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
30471	chr5	-	1958	12	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	172	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	638.95582433729	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGCCAATAAAGTGTTT	4667	False	NA	NA	False	NA	NA	NA	138167733	138162889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167514_138167598
30472	chr7	-	3840	7	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-102	-7	intron_retention	FALSE	canonical	3	135	junction_1	7.36545993132812	1	93	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTCCTGCCCGGGCTTAT	NA	False	NA	NA	False	NA	NA	NA	140676754	140671096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694
30473	chr7	-	3238	23	NNC	ENSMUSG00000030754.10	novel	3346	22	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	106.611182410083	40	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATTTGTATCTGTGGGAT	NA	False	NA	NA	False	NA	NA	NA	113853949	113814797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113814917_113815023_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
30474	chr18	+	4082	2	Intergenic	novelGene_4486	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	142	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTTGTTTTCTTGGTAT	15	False	NA	NA	False	NA	NA	NA	3000108	3013939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_3000266_3010014
30475	chr5	-	2173	9	Antisense	novelGene_ENSMUSG00000029267.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCCCAATGACTATTACAA	NA	False	NA	NA	False	NA	NA	NA	108242740	108208609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_108208728_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108242386_108242592
30477	chr13	-	3320	32	FSM	ENSMUSG00000021585.11	ENSMUST00000223206.2	5141	32	153	1668	-136	207	multi-exon	FALSE	canonical	3	49	junction_27	33.4677691410694	163	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGATCAAAATCCTTTGC	NA	False	NA	NA	False	NA	NA	NA	74956776	74842154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74956554
30481	chr19	+	1177	3	FSM	ENSMUSG00000024795.12	ENSMUST00000224381.2	675	3	-513	11	-513	-2	multi-exon	FALSE	canonical	3	341	junction_2	9	4	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACCGGTGTACTTTATA	NA	False	NA	NA	False	NA	NA	NA	34949615	34953132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_34950410_34951827_34951971_34952892
30482	chr9	+	2010	7	NNC	ENSMUSG00000032092.6	novel	3107	6	NA	NA	-41	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	200.984797656163	67	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAACTATGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	44953952	44965306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175_44964108_44964967
30483	chr8	+	2231	13	NNC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	110.839567493843	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGTTCCTTTGGATGA	NA	False	NA	NA	False	NA	NA	NA	117648460	117668243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_117648523_117649066_117649181_117652164_117652609_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
30484	chr19	-	3941	14	NNC	ENSMUSG00000025195.10	novel	3901	14	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	27.6289874361252	67	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	43868169	43835260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857454_43858600_43858749_43862596_43862697_43863265_43863460_43867201_43867288_43868051
30486	chr3	-	3695	18	FSM	ENSMUSG00000027889.18	ENSMUST00000102638.8	3650	18	-45	0	-21	0	multi-exon	FALSE	canonical	3	198	junction_12	21.7907634157735	184	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993988	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
30487	chr7	+	3032	5	NIC	ENSMUSG00000046027.18	novel	2483	6	NA	NA	3	-3	intron_retention	FALSE	canonical	3	154	junction_4	15.7718102955875	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTATCTTGAGTTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	83281210	83291533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
30488	chr4	-	2478	11	FSM	ENSMUSG00000028391.17	ENSMUST00000030087.14	1440	11	-12	-1026	-3	24	multi-exon	FALSE	canonical	3	150	junction_2	19.4548194543152	446	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAAGTTATTTTAGGCC	NA	False	NA	NA	False	NA	NA	NA	62389136	62370844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
30489	chr9	+	2051	8	NIC	ENSMUSG00000032602.7	novel	1783	9	NA	NA	34	0	intron_retention	FALSE	canonical	3	619	junction_7	107.359780406722	1358	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5111	False	NA	NA	False	NA	NA	NA	108539330	108561840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559656_108560247_108560373_108561030
30490	chr17	-	1519	5	NIC	ENSMUSG00000005823.10	novel	2166	16	NA	NA	10227	24	intron_retention	FALSE	canonical	3	184	junction_1	16.8819430161341	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGCTGTGCGGAGCCC	NA	False	NA	NA	False	NA	NA	NA	57544436	57541919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57542367_57542922_57543048_57543155_57543741_57543870_57544002_57544205
30491	chr5	-	2636	6	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-24	0	intron_retention	FALSE	canonical	3	174	junction_5	72.2706025988437	7	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794428	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34792504_34792713_34792876_34792952_34793469_34793753_34793851_34793937_34794128_34794270
30492	chr15	+	2239	9	NNC	ENSMUSG00000023010.16	novel	1148	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	614.447312631441	2	72	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTGTCTCAGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	99290866	99307928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302375_99303758_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
30493	chr8	+	2442	7	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	94.4800096434279	1	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGTGTATTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	47070446	47092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089271_47089358_47090953
30494	chr11	+	1338	3	NIC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	-1	intron_retention	FALSE	canonical	3	11207	junction_1	780.5	98	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGATGTCCAGATTGCA	4058	False	NA	NA	False	NA	NA	NA	100210811	100212921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100210987_100211491_100211876_100212142
30495	chr13	+	2960	26	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	27983	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	196.48409604851	1	112	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	18929442	19050974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18929510_18966816_18966892_18975756_18975820_18978496_18978556_18994601_18994722_18995736_18995884_18998396_18998464_19007972_19008048_19011773_19011900_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026455_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
30496	chr11	-	3904	5	FSM	ENSMUSG00000037001.11	ENSMUST00000102703.2	3890	5	-19	5	-19	-5	multi-exon	FALSE	canonical	3	42	junction_4	4.94974746830583	99	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTATGACACCATTTTCT	7165	False	NA	NA	False	NA	NA	NA	58795070	58778983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_58782373_58783787_58783881_58791390_58791518_58793568_58793734_58794940
30497	chr11	+	717	7	FSM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	6	-1	6	1	multi-exon	FALSE	canonical	3	1080	junction_1	114.661821603066	5151	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTCATTGAATTATTG	1487	False	NA	NA	False	NA	NA	NA	58062492	58070392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
30498	chr4	-	2439	1	NIC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	3608	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	132556678	132554239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132554200_132556700
30499	chr8	+	2273	6	NNC	ENSMUSG00000056820.8	novel	2391	6	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	173.878808369508	14	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCCTCTGGTTAAGCTT	5256	False	NA	NA	False	NA	NA	NA	125739797	125760931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_125739952_125740248_125740354_125742393_125742472_125751264_125751377_125755506_125755635_125759235
30500	chr13	+	2159	17	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	91	9813	-8	445	5prime_fragment	FALSE	canonical	3	649	junction_6	71.965025142426	14	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACCATCTTTTATTTGCAA	1301	False	NA	NA	False	NA	NA	NA	59733199	59773923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232
30501	chr11	+	2494	12	NNC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	19	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	404.576178608579	9	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTTCTAAAGCTGCAGA	NA	False	NA	NA	False	NA	NA	NA	101207057	101214345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617_101212982_101213114
30502	chr14	+	4094	13	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	13.9363633069112	65	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	NA	NA	NA	26836816	27125868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26837273_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
30503	chr10	+	2031	15	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	274.541742486178	14	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171915	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212934_21223289_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
30504	chr6	+	307	2	ISM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	7078	255	7078	-255	3prime_fragment	FALSE	canonical	3	1312	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGCCCTTAATATTCTT	NA	False	NA	NA	False	NA	NA	NA	122293035	122293493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122293136_122293286
30505	chr15	+	3072	2	NNC	ENSMUSG00000022400.10	novel	794	2	NA	NA	-694	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	66	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTCCTTTGTGTCATT	NA	False	NA	NA	False	NA	NA	NA	81357128	81360564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81358122_81358485
30506	chr2	-	1179	8	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-43	-1023	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4686.11925079303	32	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAATTCTTTGAAGTCGA	3693	False	NA	NA	False	NA	NA	NA	154734794	154714360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726268_154730170_154730281_154734609
30507	chr14	-	1384	8	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-48	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1142.4896194768	2	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACGATCGCTTGCAAC	NA	False	NA	NA	False	NA	NA	NA	63737756	63729814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735056_63737617
30509	chr10	+	1819	5	NNC	ENSMUSG00000020265.17	novel	1874	4	NA	NA	-1	-8	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	590.852932209023	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTGTCTCTTGGCCTA	NA	False	NA	NA	False	NA	NA	NA	77442403	77453248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77442647_77445645_77445775_77449813_77449886_77451760_77451869_77451981
30510	chr13	-	3950	6	Antisense	novelGene_ENSMUSG00000021395.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCCCGCTCCTCGCCGC	NA	False	NA	NA	False	NA	NA	NA	51306125	51254942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_51255025_51277121_51277323_51281958_51282008_51293390_51293646_51298336_51298570_51302995
30512	chr7	-	3181	22	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-5	-15	intron_retention	FALSE	non_canonical	0	0	junction_7	42.5397773038509	1	75	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTGTGTATTGATTTCT	NA	False	NA	NA	False	NA	NA	NA	140697724	140681152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684590_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
30513	chr1	-	2066	6	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	148	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	419.874933760042	32	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGATTTCGCCCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	119432376	119398040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_119398951_119399019_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
30514	chr17	+	2272	3	NIC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	-1	-7	intron_retention	FALSE	canonical	3	1395	junction_1	6.5	9	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGAAGTCTGGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	26342516	26345580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26344366_26344451_26344539_26345244
30515	chr1	-	2861	14	NNC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	50.3091037204974	1	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAATGTGGAATTTTAAA	970	False	NA	NA	False	NA	NA	NA	150268494	150237061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258844_150260179_150260287_150262108_150262165_150264300_150264409_150265986_150266108_150268440
30516	chr11	-	2009	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	67	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	723.38993634139	3	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5268	False	NA	NA	False	NA	NA	NA	88846224	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821177_88824296_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
30517	chr1	+	2676	5	FSM	ENSMUSG00000026520.9	ENSMUST00000194253.2	2717	5	42	-1	42	0	multi-exon	FALSE	canonical	3	1107	junction_1	27.6450718935582	149	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	88	False	NA	NA	False	NA	NA	NA	180731929	180735653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180732096_180732308_180733950_180734159_180734253_180734354_180734519_180735041
30518	chr10	-	2204	21	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-14	-959	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	265.502631813698	7	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845584	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77823834_77824744_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
30519	chr17	+	3261	4	NIC	ENSMUSG00000041429.4	novel	2084	6	NA	NA	35	0	intron_retention	FALSE	canonical	3	27	junction_1	106.436209377574	23	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	980	False	NA	NA	False	NA	NA	NA	24851727	24857810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24852833_24852900_24854722_24857397_24857504_24857581
30520	chr2	-	2640	12	NNC	ENSMUSG00000010914.11	novel	2506	11	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_11	132.659073387636	779	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGATATGACATGCAAAA	NA	False	NA	NA	False	NA	NA	NA	102903824	102851419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102900535_102900704_102903634
30521	chr12	-	1675	2	Genic_Genomic	ENSMUSG00000066632.4	novel	1255	1	NA	NA	-73	426	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATCTTCCATCCATAA	NA	False	NA	NA	False	NA	NA	NA	10950313	10948559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_10949475_10949553
30522	chr11	+	1779	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	-36	2	-36	-2	multi-exon	FALSE	canonical	3	732	junction_1	1	2732	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTTTATGTGTATGGT	NA	False	NA	NA	False	NA	NA	NA	121036932	121039143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_121037049_121037353_121037428_121037554
30523	chr5	-	2200	15	NNC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	-6	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	207.195806040606	285	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTACATTAGCTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	22755379	22691492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22754928_22755026_22755189
30524	chr2	-	1363	11	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_10	1782.39180877831	30	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	NA	False	NA	NA	NA	10085243	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10076801_10077077_10085158
30526	chr11	-	1349	7	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCCTCAATCCGGGACTT	NA	False	NA	NA	False	NA	NA	NA	75656662	75623754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642906_75646398_75646507_75647642_75647847_75650114_75650253_75655443_75655550_75656231
30527	chr8	-	1729	5	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-48	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1757.75174228331	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAGAAATGAGTTCAATT	NA	False	NA	NA	False	NA	NA	NA	43760065	43748108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43748937_43749022_43749574_43753664_43753743_43757512_43757597_43759877
30530	chrX	-	2468	4	NIC	ENSMUSG00000025283.16	novel	1272	7	NA	NA	-3	-13	intron_retention	FALSE	canonical	3	28	junction_1	588.9608551414	9	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAATATTCAGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	153999344	153996140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_153998227_153998596_153998681_153998780_153998833_153999098
30531	chr12	+	2773	4	NIC	ENSMUSG00000021134.18	novel	1498	8	NA	NA	920	-2	intron_retention	FALSE	canonical	3	289	junction_3	780.152264340465	2	109	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAAACTGCTTTTGGTC	NA	False	NA	NA	False	NA	NA	NA	80994069	80997269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_80994156_80994269_80994369_80994569_80996379_80996490
30534	chr2	-	2456	6	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-7	591	intron_retention	FALSE	canonical	3	258	junction_2	26.2937254872717	19	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTAACCATCCCTTCAAT	6112	False	NA	NA	False	NA	NA	NA	181007161	181000301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181006192_181006397
30536	chr10	-	1470	7	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	799.025169955379	61	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725662	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93722845_93722964_93725399
30537	chrX	+	2884	12	Antisense	novelGene_ENSMUSG00000031232.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	101	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACGGTCCGAGGGTGGGG	NA	False	NA	NA	False	NA	NA	NA	105012334	105055410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_105012707_105012767_105012837_105013670_105015091_105017794_105017864_105023003_105023087_105027315_105027380_105027973_105028062_105032576_105032721_105032995_105033131_105035998_105036115_105040416_105040598_105055267
30538	chrX	+	1541	5	NNC	ENSMUSG00000008682.14	novel	855	6	NA	NA	-1	-4	intron_retention	FALSE	canonical	1	185	junction_2	4101.98283608062	70	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTTTTTGTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	73314583	73316737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73315325_73315405_73315687_73315784_73315924_73316277_73316441_73316520
30539	chr3	-	2459	4	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134273	1881	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	51.1881062574327	54	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATGTTAAAATTTCAATG	NA	False	NA	NA	False	NA	NA	NA	153065693	152909121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_152911229_152912254_152912363_152931338_152931464_153065574
30540	chr7	-	2346	2	NNC	ENSMUSG00000038539.16	novel	1816	3	NA	NA	-14154	-3183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	72	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAACCACGGTCGCGCAG	5453	False	NA	NA	False	NA	NA	NA	44480236	44465721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44465844_44478012
30541	chr4	-	1519	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	729.869946558213	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41092913_41093155_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
30542	chr11	+	3795	7	NNC	ENSMUSG00000020794.14	novel	3931	7	NA	NA	-28	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	296.4505298809	4	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTATTATGAGCTATTT	NA	False	NA	NA	False	NA	NA	NA	72498080	72577300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349_72574740_72574780
30543	chr12	-	2459	25	NNC	ENSMUSG00000037149.11	novel	4842	26	NA	NA	4	-2339	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	444.960172999287	1	90	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATTTTCATGAAGGCTT	NA	False	NA	NA	False	NA	NA	NA	13299160	13269312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13295646_13295751_13296026_13296079_13299104
30544	chr11	-	2471	9	NNC	ENSMUSG00000020740.14	novel	3582	16	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	144.324287630322	17	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTTGGCATCTTTCAAT	3556	False	NA	NA	False	NA	NA	NA	115494702	115475084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478399_115483331_115483357_115485531_115485608_115485734_115485820_115494653
30545	chr5	-	1675	4	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	161.287183481998	27	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTGTGCTTCATTTAG	NA	False	NA	NA	False	NA	NA	NA	116560925	116546552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116547382_116547521_116547550_116553465_116553530_116560171
30546	chr11	+	1967	9	NIC	ENSMUSG00000020708.13	novel	1394	10	NA	NA	54	-6	intron_retention	FALSE	canonical	3	2261	junction_5	185.182848827854	6	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAACACTACAACTCCAG	4590	False	NA	NA	False	NA	NA	NA	106147033	106153940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
30547	chr13	+	2100	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	-3	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	82	1265	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	108181019	108185706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108181243_108182958_108183103_108183973
30548	chr1	-	3132	9	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.2294265253357	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	171854825	171828526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171829644_171832172_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
30549	chr5	-	1634	12	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	637.404084503817	1	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCTTGTTAATAACTCT	3768	False	NA	NA	False	NA	NA	NA	138168632	138162861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165342_138166331_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578
30550	chr15	+	1305	1	Antisense	novelGene_ENSMUSG00000022451.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGAACTTCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	94475831	94477136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_94475800_94477100
30552	chr11	-	2690	26	NNC	ENSMUSG00000020929.15	novel	3324	28	NA	NA	5	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	463.403399210666	1	92	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACAGGCCTTTTCCCTGTC	8474	False	NA	NA	False	NA	NA	NA	102771785	102730284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737452_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759466_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
30553	chr3	+	1788	4	ISM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	241	12087	241	-12009	intron_retention	FALSE	canonical	3	2811	junction_2	254.721198350057	13	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTGCTATGGTGAGTT	NA	False	NA	NA	False	NA	NA	NA	108164482	108175203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748
30554	chr9	+	1613	13	ISM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	158	174	5	16	5prime_fragment	FALSE	canonical	3	1479	junction_8	301.73907970666	2	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTAGCCCCTATGCTTG	1153	False	NA	NA	False	NA	NA	NA	108437642	108442609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525
30556	chr16	-	2650	16	NNC	ENSMUSG00000061751.17	novel	2690	16	NA	NA	3	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.2217135067188	29	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATTTTAAATATGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	33916395	33833549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33834049_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
30557	chr1	-	268	1	ISM	ENSMUSG00000022995.17	ENSMUST00000177811.8	4231	15	97639	17629	1423	1125	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCCCGTTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	181749906	181749638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_181749600_181749900
30558	chr15	-	4091	25	NNC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	67	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	91.6609752021	1	158	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCAGCTCTCTGCGA	NA	False	NA	NA	False	NA	NA	NA	76523973	76510436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516158_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520879_76521140_76521294_76521379_76521517_76522041_76522167_76522241_76522391_76522671_76522802_76523050_76523224_76523647_76523791_76523877
30559	chr3	-	2222	4	NNC	ENSMUSG00000027808.9	novel	4611	3	NA	NA	139	-2152	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	417.550795313177	40	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTGCAGAGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	58433174	58429389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_58431290_58432503_58432580_58432830_58432929_58433026
30560	chr15	-	1081	6	ISM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	11	6531	11	663	5prime_fragment	FALSE	canonical	3	462	junction_3	93.1162714030153	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTCATGATTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	83033574	83016707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
30561	chr4	+	1704	3	NIC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_2	296.5	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8222	False	NA	NA	False	NA	NA	NA	101504921	101516561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_101505023_101509595_101509672_101515034
30563	chr11	+	1924	14	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-33	180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1913.9653314365	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCATATTAACTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	22940592	22953331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22943266_22943320_22944297_22944384_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952393_22952840_22952931_22953136
30564	chr4	+	2726	15	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	-3	1	intron_retention	FALSE	canonical	0	0	junction_2	60.6168966812497	2	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTGTGGTCCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	141172013	141194537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174649_141189101_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191783_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
30565	chr17	-	1746	13	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-97	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	176.354027613649	5	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGAGTGTGTGCGAGTC	NA	False	NA	NA	False	NA	NA	NA	57318385	57310408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311361_57311506_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
30566	chr19	+	1213	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	159	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3136.13430187149	33	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGCCTCCTTTGT	1002	False	NA	NA	False	NA	NA	NA	8944563	8955551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950006_8954681_8954855_8954948_8955074_8955307
30567	chr15	-	1643	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	55	-87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1842.67486008791	1	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGCTGCGTCTGCAGTT	NA	False	NA	NA	False	NA	NA	NA	31601831	31591032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597560_31597722_31598145_31598207_31601746
30568	chr11	-	1995	14	Genic_Genomic	ENSMUSG00000034493.2	novel	1220	2	NA	NA	-2430	-30741	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAGAGCCTCGTTCATAC	2832	False	NA	NA	False	NA	NA	NA	3929208	3918281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_3918337_3919425_3919585_3920622_3920742_3923200_3923360_3923444_3923539_3925525_3925644_3925737_3925813_3926032_3926121_3926286_3926418_3926771_3926895_3927012_3927206_3927646_3927782_3927868_3928031_3928824
30569	chr9	-	1737	8	NIC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	10	1520	combination_of_known_junctions	FALSE	canonical	3	62	junction_6	586.784875227641	132	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCCGCTGGTTCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	21061228	21050728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053974_21054242_21054522_21061051
30570	chrX	+	1365	9	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	43	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1137.4665860477	1	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52077056	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52080618_52080732_52087967_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
30571	chr2	-	4237	8	NNC	ENSMUSG00000027171.11	novel	2872	6	NA	NA	102	3520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.60247758603645	35	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTGTTGGTTTTATAA	NA	False	NA	NA	False	NA	NA	NA	104680119	104657565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_104659680_104661638_104661840_104661933_104663156_104669666_104669800_104672399_104672449_104675334_104675499_104679420_104679546_104679890
30572	chr8	-	3844	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	21249	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.13938165239	1	177	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	81585876	81491062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492819_81492938_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
30573	chr15	+	2455	18	NNC	ENSMUSG00000033065.15	novel	2879	23	NA	NA	12638	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	24.9734807442701	40	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGTTTTGGGCGCTCTT	NA	False	NA	NA	False	NA	NA	NA	98018984	98030322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029731
30574	chr11	+	2488	22	NIC	ENSMUSG00000059439.16	novel	3810	28	NA	NA	1395	-19047	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	25.0890477591382	1	61	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	4918	False	NA	NA	False	NA	NA	NA	85245432	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_85245488_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
30575	chr14	+	1535	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-19	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACACGTGTTTCTATATG	6572	False	NA	NA	False	NA	NA	NA	76741950	76745201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744412_76744601
30576	chr2	-	1861	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	4	924	4	-924	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	430	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAATCTTAATCATATA	NA	False	NA	NA	False	NA	NA	NA	154445624	154428601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
30577	chr8	-	3656	18	FSM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	87	-97	-4	-44	multi-exon	FALSE	canonical	3	416	junction_13	64.9317448394025	1	147	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGTGGATTTTACTGTT	NA	False	NA	NA	False	NA	NA	NA	73228983	73214376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
30578	chr4	-	2285	16	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	44	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	203.418932801798	32	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGATTTTGCTTGATGG	NA	False	NA	NA	False	NA	NA	NA	155845481	155825103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155825810_155830485_155830595_155831823_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
30579	chr18	+	2175	7	NNC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	31	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	174.201033291999	3	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTTTGTAAAAAACCTTT	NA	False	NA	NA	False	NA	NA	NA	21134995	21160591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21143797_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
30580	chr4	-	2667	19	NNC	ENSMUSG00000040359.15	novel	4316	19	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	52.8017489422275	4	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGGACTTGTTTGTTAT	11	True	NA	NA	False	NA	NA	NA	25281765	25250148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278060_25278608_25278702_25279345_25279375_25280622_25280769_25281675
30581	chr1	+	4182	25	NIC	ENSMUSG00000026104.15	novel	5151	25	NA	NA	6	-83	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	8.09663853432741	57	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTTATGAGTTGGTTTA	3254	False	NA	NA	False	NA	NA	NA	52158604	52200083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_52158783_52159070_52159195_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144_52194221_52195141_52195242_52198441
30583	chr14	-	2715	6	NNC	ENSMUSG00000060373.16	novel	1301	8	NA	NA	17581	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1676.56684924879	35	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	52317495	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52316592_52316805_52316985_52317349
30584	chr9	-	2490	10	Antisense	novelGene_ENSMUSG00000037257.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGGCGCTGCTTCCGCCT	NA	False	NA	NA	False	NA	NA	NA	63549176	63509958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_63510054_63524063_63524157_63524267_63524366_63524788_63524880_63526427_63526513_63542585_63542665_63543662_63543759_63546310_63546425_63546872_63546922_63547486
30586	chr12	+	2230	1	ISM	ENSMUSG00000021255.18	ENSMUST00000116402.10	4300	7	158281	1	14989	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	70	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGTTCATGCGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	86566171	86568401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_86566200_86568400
30587	chr2	+	1398	11	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	-8	-712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1246.30889028362	1	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATACTGTCGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121244580	121268456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244588_121257114_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
30588	chr4	+	2441	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174350.8	1124	4	58	-1375	53	724	multi-exon	FALSE	canonical	3	284	junction_1	212.397426224205	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACCAGTTGGTTCCCCG	3256	False	NA	NA	False	NA	NA	NA	129494552	129503045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129495037_129495987_129496055_129500879_129500973_129501248
30589	chrX	-	2566	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	88	-129	88	128	multi-exon	FALSE	canonical	3	54	junction_4	64.8382603097893	125	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTGTTGGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	161612362	161571784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
30590	chr3	+	1910	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	911.921847320976	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3824	False	NA	NA	False	NA	NA	NA	88204442	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225676_88225834_88227766_88227993_88228320_88228453_88228750
30591	chr4	-	4079	18	NNC	ENSMUSG00000029020.14	novel	4341	20	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	19.6142734554046	1	80	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCCTGTGTGAGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	147989152	147958063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971989_147974615_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
30592	chr1	+	3857	6	NNC	ENSMUSG00000051285.18	novel	1153	5	NA	NA	-21351	71	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	64.5773954259538	4	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTACACAGCATTATCCAG	6192	False	NA	NA	False	NA	NA	NA	7196509	7242954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_7196560_7217860_7217964_7225303_7225496_7231115_7231288_7233471_7233596_7239738
30593	chr3	+	1843	4	NNC	ENSMUSG00000027500.11	novel	308	2	NA	NA	-15204	0	intron_retention	FALSE	canonical	3	6	junction_1	868.993415139353	23	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	8610121	8626666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_8610259_8610632_8610806_8619851_8620044_8625325
30594	chr5	+	1098	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	212	-22	-212	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	3	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
30597	chr2	+	1909	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	-3	-708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1774.13076525442	2	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGTCGTTTTTTTCCCC	NA	False	NA	NA	False	NA	NA	NA	121244360	121268460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255117_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264151_121264465_121264577_121265282_121265399_121266401_121266482_121266837_121266896_121268066
30598	chr9	-	3061	6	FSM	ENSMUSG00000003308.16	ENSMUST00000194542.6	3151	6	89	1	89	0	multi-exon	FALSE	canonical	3	33	junction_5	41.5143348736313	257	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	False	NA	NA	False	NA	NA	NA	21150539	21141026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150371
30599	chr9	-	3438	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	55	579	8	-579	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	266	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATGTTTACTGGACTCT	NA	False	NA	NA	False	NA	NA	NA	44679087	44653439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
30600	chr3	+	3384	10	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-8	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.334783668126	1	148	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGAGTTTAGAACTAGGAA	NA	False	NA	NA	False	NA	NA	NA	105866815	105877061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867424_105867459_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
30601	chr13	-	1794	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	27	-84	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	650.840421637954	7	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTATCCCTGAATCAA	NA	False	NA	NA	False	NA	NA	NA	97334838	97312922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317694_97318357_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
30603	chr2	+	3036	3	NNC	ENSMUSG00000074884.13	novel	876	3	NA	NA	5	8	intron_retention	FALSE	non_canonical	0	0	junction_2	2965.5	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTCTGGGTAGAAGTTG	NA	False	NA	NA	False	NA	NA	NA	121279868	121283494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121279923_121280455_121281330_121281386
30604	chr10	-	1926	12	NNC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	291.744992237858	10	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCTTCCTGTGTCAGC	4772	False	NA	NA	False	NA	NA	NA	80896012	80879904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887120_80887949_80888086_80895961
30606	chr11	+	1554	10	ISM	ENSMUSG00000059552.14	ENSMUST00000005371.12	1772	11	6595	-2	-1741	2	3prime_fragment	FALSE	canonical	3	1895	junction_2	118.17198180597	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTGAGAGGTTGATAT	NA	False	NA	NA	False	NA	NA	NA	69477779	69482701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
30608	chr3	+	1910	6	NNC	ENSMUSG00000078578.10	novel	1512	8	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1275.524739078	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	NA	False	NA	NA	NA	135144068	135172436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144114_135145404_135145493_135164539_135164636_135165735_135165842_135168710_135168805_135170955
30609	chr13	-	1961	9	NNC	ENSMUSG00000021519.12	novel	1479	8	NA	NA	8	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	152.691222324664	7	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATGTATTTTTAAAATA	473	False	NA	NA	False	NA	NA	NA	67081056	67060203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67078771_67079372_67080998
30610	chr17	+	2886	14	NIC	ENSMUSG00000002833.12	novel	2270	16	NA	NA	23	1	intron_retention	FALSE	canonical	3	635	junction_13	75.1865529963922	35	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAGAAACAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	56386660	56407593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56404017_56404087_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
30612	chr2	-	4027	1	Antisense	novelGene_ENSMUSG00000036992.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCGCGCCGCAAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	148518614	148514587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_148514600_148518600
30613	chr7	-	1596	7	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-36	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	781.567157845199	6	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8829	False	NA	NA	False	NA	NA	NA	141941630	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930339_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
30614	chr2	+	2056	6	NNC	ENSMUSG00000006418.18	novel	2502	6	NA	NA	76	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	245.668394385603	1	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCAGTAAGCTGCAATGT	NA	False	NA	NA	False	NA	NA	NA	167345441	167358083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353244_167354436_167354545_167356585
30615	chr17	-	2156	16	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	247.460668030744	8	50	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGTTTCTATGCTCAC	NA	False	NA	NA	False	NA	NA	NA	28841426	28808563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28809231_28810193_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818550_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
30618	chr8	-	1580	5	NNC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	312.739807987407	6	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTTCTGGTTTTCATGA	NA	False	NA	NA	False	NA	NA	NA	65186606	65171261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_65172216_65173375_65173531_65175497_65175625_65180663_65180943_65186541
30619	chr4	-	3103	8	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	20	18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	520.079507265525	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTCGACCTGAGACT	NA	False	NA	NA	False	NA	NA	NA	124587373	124572571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_124572780_124573494_124575644_124575884_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
30621	chr17	+	1981	6	ISM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	69	1927	16	-247	5prime_fragment	FALSE	canonical	3	546	junction_5	25.2934774200781	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCCCAGCAAGAGATTTC	5638	False	NA	NA	False	NA	NA	NA	34128487	34132637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246
30622	chr11	+	2375	9	Antisense	novelGene_ENSMUSG00000018736.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	220	7	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGCACGGGGGCGGAGTCA	7757	False	NA	NA	False	NA	NA	NA	68712263	68743954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_68713494_68720741_68720892_68724178_68724272_68726975_68727150_68730696_68730833_68732844_68732993_68734642_68734801_68736152_68736253_68743768
30626	chr2	-	1645	11	ISM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	99	5	13	-1	intron_retention	FALSE	canonical	3	745	junction_6	50.7992125923227	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTATCTGGTTTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	130126368	130121233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090
30627	chr5	+	4117	8	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-2421	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.9537833527571	5	59	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAATGAATTAATTTATT	NA	False	NA	NA	False	NA	NA	NA	121050177	121059710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121050924_121051204_121052508_121052546_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
30628	chr2	+	1185	1	ISM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	1905	23	1881	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTAAACCACCTGGTG	NA	False	NA	NA	False	NA	NA	NA	28359982	28361167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28360000_28361200
30629	chr15	-	2457	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	52	0	21	0	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	13	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATCGGCCATTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	36496914	36477813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
30630	chr10	+	2879	12	FSM	ENSMUSG00000019952.16	ENSMUST00000020113.15	2862	12	67	-84	0	-2	multi-exon	FALSE	canonical	3	64	junction_11	10.2158522093674	178	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAATGTCTTCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	98942964	99033934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
30632	chr15	+	3882	5	NNC	ENSMUSG00000022248.15	novel	1073	5	NA	NA	-15	2	intron_retention	FALSE	canonical	0	0	junction_4	347.513578871387	8	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATCCGACTTACTGTACT	20	False	NA	NA	False	NA	NA	NA	10486119	10493762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_10486803_10488075_10488185_10490341_10492990_10493239_10493477_10493557
30634	chr2	-	3513	8	NNC	ENSMUSG00000035778.18	novel	3391	8	NA	NA	-1129	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	31.4798283323899	17	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGGTCTGGTATGGAT	NA	False	NA	NA	False	NA	NA	NA	35354372	35290192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35354176
30635	chr3	+	2718	15	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	19	-1	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_10	134.475018543389	3	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGTGTTTACCTGAGAT	NA	False	NA	NA	False	NA	NA	NA	95467007	95494906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467035_95467121_95467247_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95493210
30636	chr6	-	1882	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	2	-24	intron_retention	FALSE	canonical	0	0	junction_1	279.574416151884	68	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9211	False	NA	NA	False	NA	NA	NA	88495771	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88480916_88482065_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
30637	chr3	+	1775	16	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	1	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	138.419105938772	2	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATATAGTGTGTTATTAA	NA	False	NA	NA	False	NA	NA	NA	95466989	95495168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467035_95467121_95467247_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95478002_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485618_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
30638	chr9	+	1324	6	NIC	ENSMUSG00000032295.16	novel	1378	10	NA	NA	-71	-6	intron_retention	FALSE	canonical	2	212	junction_4	35.5718990215591	13	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAGCAGCACTATAATGGT	NA	False	NA	NA	False	NA	NA	NA	57047490	57049481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57047588_57047665_57048063_57048384_57048495_57048589_57048997_57049089_57049200_57049278
30639	chr14	-	1835	10	FSM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	3	4	3	-4	multi-exon	FALSE	canonical	3	788	junction_6	38.5313724991294	1447	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCCTATAGTTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	51022973	51002875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
30640	chr7	+	3154	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	43	-1598	-10	1598	multi-exon	TRUE	canonical	3	208	junction_1	16.5378354085412	1589	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGTGCCTCTGTCACTCC	3987	False	NA	NA	False	NA	NA	NA	45522238	45534754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
30641	chr10	-	3076	1	Genic_Genomic	ENSMUSG00000004667.19	novel	NA	NA	NA	NA	-803	1036	mono-exon	FALSE	NA	NA	NA	NA	NA	1	109	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTCCATGTGTCTCCTG	7322	False	NA	NA	False	NA	NA	NA	79873822	79870746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_79870700_79873800
30642	chr16	+	2443	3	Fusion	ENSMUSG00000116947.2_ENSMUSG00000116939.2	novel	452	2	NA	NA	433	-75	multi-exon	FALSE	non_canonical	0	0	junction_1	8	14	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGGCTACTATAAGCCTA	3297	False	NA	NA	False	NA	NA	NA	93812732	93817108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_93814317_93814416_93814651_93816483
30643	chr7	-	1692	1	FSM	ENSMUSG00000030706.18	ENSMUST00000064334.3	1865	1	131	42	131	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGCAAAACTCTTATGCAT	NA	False	NA	NA	False	NA	NA	NA	100196696	100195004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_100195000_100196700
30644	chr1	-	2030	10	Antisense	novelGene_ENSMUSG00000026456.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCGGAAAGATCCCACAAT	5234	False	NA	NA	False	NA	NA	NA	134339459	134333749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_134333790_134334048_134334200_134334335_134334409_134334782_134334889_134335309_134335440_134335552_134335998_134336142_134336228_134337339_134337422_134338227_134338329_134338642
30645	chr18	-	2862	2	NNC	ENSMUSG00000034320.15	novel	7814	4	NA	NA	4527	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	32	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTACTGTGTAAATTAT	2594	False	NA	NA	False	NA	NA	NA	61328914	61326006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61327055_61327100
30647	chr1	+	2981	1	Genic_Genomic	ENSMUSG00000073676.5	novel	NA	NA	NA	NA	14	1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGTCTTTGGTAATTT	NA	False	NA	NA	False	NA	NA	NA	55127486	55130467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_55127500_55130500
30648	chr19	-	2160	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-59	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	913.708012091908	1	79	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3704	False	NA	NA	False	NA	NA	NA	7017394	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011671_7012014_7012157_7012863_7013074_7017247
30649	chr1	+	2425	8	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	8	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	363.215964316953	1	97	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTTATCGATTGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	4878060	4916951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878210_4898786_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911308_4915185
30650	chr9	-	3525	6	Antisense	novelGene_ENSMUSG00000047412.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	284	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGGCGGTGGCGGCAACCC	NA	False	NA	NA	False	NA	NA	NA	30981839	30942152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_30942253_30964533_30965608_30973334_30973420_30975472_30975637_30977952_30978254_30980038
30651	chr18	-	3082	20	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	105	-832	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	308.312483136213	1	132	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGCCAGGCAGGGCTG	NA	False	NA	NA	False	NA	NA	NA	60981885	60951933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60952017_60952459_60952678_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
30652	chr9	-	3030	6	NNC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	6	0	intron_retention	FALSE	non_canonical	0	0	junction_4	95.0347304936464	216	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTATGGGATCCTTTCA	NA	False	NA	NA	False	NA	NA	NA	57744070	57697635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57703921_57741435_57741516_57743964
30653	chr5	+	986	5	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1830	2706	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGTCAGTTCTCCACTC	682	False	NA	NA	False	NA	NA	NA	138162868	138165614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165027_138165305
30654	chr9	+	2243	5	FSM	ENSMUSG00000043289.13	ENSMUST00000057067.10	2670	5	40	387	1	181	multi-exon	FALSE	canonical	3	28	junction_2	8.4372685153431	180	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTTTCAGATGCCATT	NA	False	NA	NA	False	NA	NA	NA	81745762	81908692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_81745971_81772174_81772421_81809150_81809687_81861178_81861311_81907571
30655	chr9	+	683	1	FSM	ENSMUSG00000103536.2	ENSMUST00000191743.2	604	1	-209	130	-209	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAAGTTCTGTGTTGCCTG	NA	False	NA	NA	False	NA	NA	NA	81910423	81911106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_81910400_81911100
30656	chr10	+	2457	16	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	1	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	265.429915420248	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAAAAATGTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	21171917	21244788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218428_21225205_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
30657	chr9	-	1554	2	NIC	ENSMUSG00000060461.6	novel	619	3	NA	NA	-514	-5	intron_retention	FALSE	canonical	3	181318	junction_1	0	11	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGCGTCGTCATTA	NA	False	NA	NA	False	NA	NA	NA	78275973	78274338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_78275186_78275266
30658	chr3	+	2934	12	ISM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	37294	85	-30	-85	3prime_fragment	FALSE	canonical	3	85	junction_3	26.9876004585883	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGATTATATAAATTGCA	NA	False	NA	NA	False	NA	NA	NA	135228665	135277080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
30659	chr14	+	1944	10	NIC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	5	2	intron_retention	FALSE	canonical	3	74	junction_1	503.772435397836	95	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGTTATGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73790210	73833584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_73790338_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
30660	chr12	-	4824	5	ISM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	71	7	20	-1	intron_retention	FALSE	canonical	1	2	junction_4	119.792528982404	41	106	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATTGAGCAGTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	71183351	71169954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280
30661	chr4	+	1548	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	-22	-7	-2	0	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	1164	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3174	False	NA	NA	False	NA	NA	NA	129494470	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
30662	chr13	-	3405	5	NNC	ENSMUSG00000059839.10	novel	3744	4	NA	NA	-3	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.01560470775798	65	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTACTGTCATTGGTGTT	5452	False	NA	NA	False	NA	NA	NA	67632336	67619643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67621214_67621532_67623071_67629288_67629382_67629837_67629965_67632259
30663	chr11	-	2117	4	NIC	ENSMUSG00000062825.16	novel	1827	5	NA	NA	-11	-7	intron_retention	FALSE	canonical	3	5636	junction_3	503.554256152094	2	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGACCATTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	120238928	120236523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120237360_120237462_120237645_120237736_120238702_120238794
30664	chr3	+	2167	9	ISM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	63	61	63	-5	intron_retention	FALSE	canonical	3	1030	junction_1	80.2994395995389	4	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAGCATCATGTTGAG	NA	False	NA	NA	False	NA	NA	NA	97066155	97083829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943
30666	chr6	+	1746	12	FSM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	14	4	0	0	multi-exon	FALSE	canonical	3	485	junction_5	30.2182146373304	1486	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGTCTGTGTGTG	6588	False	NA	NA	False	NA	NA	NA	134988588	135000735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
30668	chr18	-	2973	22	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-28987	-3	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_21	43.4022999066663	304	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTGGTCTGGTCTCTTTA	NA	False	NA	NA	False	NA	NA	NA	34054014	33929382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34053910
30669	chr17	+	3180	19	NIC	ENSMUSG00000024319.19	novel	2014	19	NA	NA	0	514	intron_retention	FALSE	canonical	2	228	junction_9	32.381407559826	13	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGGACCGTGTCCTCTC	NA	False	NA	NA	False	NA	NA	NA	34174888	34185461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
30670	chr2	-	3220	15	NIC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-214	0	intron_retention	FALSE	canonical	1	2	junction_14	30.3497469982394	7	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	93699716	93685706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93686326_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93698783
30671	chr5	+	1085	8	ISM	ENSMUSG00000079109.12	ENSMUST00000126331.2	2826	11	-3	7115	-3	2097	5prime_fragment	FALSE	canonical	3	72	junction_4	13.760339340856	2	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGGTGAGGCCTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	143846839	143856573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326
30672	chr4	+	2372	12	NNC	ENSMUSG00000028383.18	novel	2626	12	NA	NA	66	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	28.7775739132155	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCTATGTGCCTTTTAT	5	True	NA	NA	False	NA	NA	NA	59581710	59618686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610631_59610718_59610876_59612681_59612811_59617634
30673	chr5	-	347	1	ISM	ENSMUSG00000049550.18	ENSMUST00000111564.8	5609	24	106155	26	390	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATAAATGTTTTGGGTC	4871	False	NA	NA	False	NA	NA	NA	123716230	123715883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_123715900_123716200
30674	chr14	-	2664	20	NNC	ENSMUSG00000022020.16	novel	13223	20	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	50.0736853169291	1	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGGGGTTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	79628147	79573075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619062_79620788_79620834_79622093_79622199_79624461_79624547_79628001
30675	chr2	-	2672	5	FSM	ENSMUSG00000038671.16	ENSMUST00000152580.8	1822	5	-33	-817	-6	602	multi-exon	FALSE	canonical	3	258	junction_2	29.3715423496962	25	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTCAATCAGTTAGATGG	6113	False	NA	NA	False	NA	NA	NA	181007160	181000290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806
30676	chr4	+	3015	4	NNC	ENSMUSG00000046667.15	novel	2949	4	NA	NA	-12	5	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	21.6999743983464	62	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGAGAATTTCCTGTATT	4	False	NA	NA	False	NA	NA	NA	12140304	12146736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_12140402_12140540_12140674_12143409_12143460_12144001
30677	chr3	-	2557	17	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_5	157.910860436355	1	54	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGCTGTGCCTTCATCT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649991_95653096_95653170_95653340_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
30678	chr7	-	756	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5693.09817283661	51	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129219_99130925_99130999_99131467_99131562_99131776_99131908_99132798
30680	chr1	-	2558	17	ISM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	-26	3176	-26	-3176	5prime_fragment	FALSE	canonical	3	130	junction_10	20.8712571494867	3	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATCCACTATTACCAGAA	6674	False	NA	NA	False	NA	NA	NA	54478156	54438338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
30681	chr16	-	1938	3	ISM	ENSMUSG00000022500.16	ENSMUST00000117360.8	763	4	8929	-1327	8929	-222	3prime_fragment	FALSE	canonical	3	340	junction_2	14	25	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAGAAAGGCCTTGTGT	8635	False	NA	NA	False	NA	NA	NA	10784514	10777360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_10778916_10781120_10781278_10784288
30682	chr10	-	2183	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	0	617	0	4	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAAGATCCTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	116417405	116321687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
30683	chr4	-	2003	4	NNC	ENSMUSG00000028675.13	novel	630	3	NA	NA	-32	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.364382548643	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACCTTTCCTCCCTAG	NA	False	NA	NA	False	NA	NA	NA	135600913	135598247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135599306_135599351_135599766_135600205_135600411_135600587
30684	chr8	-	1888	2	ISM	ENSMUSG00000039720.8	ENSMUST00000209281.2	686	3	-879	-1	-879	1	intron_retention	FALSE	canonical	3	112	junction_1	0	1	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTCATTGCTATGTTCT	NA	False	NA	NA	False	NA	NA	NA	27689624	27687490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_27687710_27687955
30685	chr9	+	2373	12	NNC	ENSMUSG00000038957.14	novel	5708	7	NA	NA	42142	12622	intron_retention	FALSE	non_canonical	0	0	junction_1	0	77	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTTCCGCTTCCGGCTC	5261	False	NA	NA	False	NA	NA	NA	57657991	57672404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57659110_57659396_57659478_57659927_57660013_57660554_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665636_57665911_57666007_57668106_57668324_57668998_57669151_57672356
30686	chr14	+	4312	14	Antisense	novelGene_ENSMUSG00000021910.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGCCGCCATGTTGCCG	4811	False	NA	NA	False	NA	NA	NA	30903563	30928606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30906354_30906897_30907007_30907267_30907383_30908715_30908845_30909015_30909204_30909608_30909676_30910595_30910751_30911686_30911784_30912952_30913047_30913339_30913508_30914539_30914589_30925185_30925369_30926400_30926481_30928518
30687	chr11	-	2261	11	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	293.292430860396	1	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8480	False	NA	NA	False	NA	NA	NA	69572722	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565337_69567921_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
30688	chr1	+	3319	11	NIC	ENSMUSG00000026641.14	novel	2167	10	NA	NA	-4	1174	intron_retention	FALSE	canonical	3	21	junction_1	69.6218356552023	882	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CATGAAAAACTCAAATAAAA	6733	False	NA	NA	False	NA	NA	NA	171238876	171247884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171239009_171241940_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599_171247669_171247758
30689	chr7	-	4146	18	Fusion	ENSMUSG00000035458.16_ENSMUSG00000055809.8	novel	2224	12	NA	NA	7	-7	intron_retention	FALSE	non_canonical	0	0	junction_6	9.18137124043415	85	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAGAAGGAACTGTGT	NA	False	NA	NA	False	NA	NA	NA	4535445	4521313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525296_4525441_4525681_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4534880_4535185_4535275_4535376
30690	chr11	+	1839	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	-19	0	0	0	multi-exon	FALSE	canonical	3	887	junction_3	62.8477525453377	432	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120563798	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
30691	chr12	+	2310	8	ISM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	6	6	6	-6	intron_retention	FALSE	canonical	3	449	junction_5	42.2103575643975	12	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAAGTTGCTTTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	87194497	87211491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761
30692	chr2	+	2210	10	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-438	intron_retention	FALSE	non_canonical	0	0	junction_1	317.571494818077	2	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	164675725	164681501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164676232_164676798_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560
30693	chr10	+	1829	6	NIC	ENSMUSG00000006728.13	novel	2038	7	NA	NA	34	-21	intron_retention	FALSE	canonical	3	131	junction_1	2163.06195935299	41	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAAGAGTATGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	126899436	126903145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126899629_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
30694	chr12	+	1952	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	28	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	21	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGCTGAGTCGTTCAT	NA	False	NA	NA	False	NA	NA	NA	86516918	86568391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565818_86567733
30695	chr2	-	3572	19	FSM	ENSMUSG00000027346.16	ENSMUST00000149854.8	3612	19	36	4	-12	-3	multi-exon	TRUE	canonical	3	23	junction_15	20.2402239776804	2	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTTGGCTTCCTGATT	NA	False	NA	NA	False	NA	NA	NA	132420119	132371005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132406546_132406632_132410539_132410637_132414104_132414175_132419987
30696	chr7	+	3283	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	76	7	27	-7	multi-exon	FALSE	canonical	3	147	junction_1	0	1	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAAGCTGGTTGTCTTCA	3309	False	NA	NA	False	NA	NA	NA	18962334	18981786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18962510_18978678
30697	chr11	+	4221	18	Antisense	novelGene_ENSMUSG00000032782.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	107	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGCCTCCCGCCCACCGC	NA	False	NA	NA	False	NA	NA	NA	69190358	69214617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69190820_69191070_69191142_69193677_69193795_69193921_69194088_69195082_69195144_69196309_69196456_69198768_69199027_69200172_69200342_69200808_69200924_69202150_69202301_69205541_69205683_69206014_69206258_69209774_69209863_69210179_69210801_69211643_69211805_69212183_69212242_69212667_69212762_69213516
30698	chr5	-	2463	16	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	29	434	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	170.321734764925	1	96	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTATATGAACATTTAT	NA	False	NA	NA	False	NA	NA	NA	31337432	31316404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331425_31331575_31331840_31337227
30699	chr8	-	2359	5	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-68	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_3	2121.07737954088	1	119	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	43760085	43748103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758460_43758980_43759877
30701	chr17	+	3196	8	NIC	ENSMUSG00000025737.6	novel	3099	9	NA	NA	-6	2	intron_retention	FALSE	canonical	3	91	junction_4	15.4166620702328	219	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGGCCACTTGTCACT	NA	False	NA	NA	False	NA	NA	NA	26042616	26047697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26043661_26044627_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
30702	chr5	-	2684	10	NNC	ENSMUSG00000042508.17	novel	3498	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	80.6057314997965	7	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTTGAGCCATGCAATTA	NA	False	NA	NA	False	NA	NA	NA	9211730	9168867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174603_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
30703	chr1	+	3196	5	FSM	ENSMUSG00000026435.16	ENSMUST00000177943.8	3212	5	11	5	11	0	multi-exon	FALSE	canonical	3	24	junction_4	4.65698400254929	97	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATATGTGTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	131890715	131910702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131890791_131904455_131904851_131905150_131905937_131906485_131906752_131909028
30704	chr4	-	1888	6	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	20	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	733.763449621198	1	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTGAGCCTGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	137084990	137047015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048402_137056091_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
30705	chr4	+	2680	6	NNC	ENSMUSG00000028676.18	novel	3058	6	NA	NA	2	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	700.070853556981	2	113	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAGGAAATAATGATT	4688	False	NA	NA	False	NA	NA	NA	135583424	135593114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590520_135590839_135590888_135591039
30706	chr6	-	2636	11	NNC	ENSMUSG00000035378.18	novel	1990	11	NA	NA	-3	670	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	80.3295711428861	596	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAAGCCTCTGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	100648121	100549372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613955_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
30707	chr2	-	3790	11	NIC	ENSMUSG00000039536.17	novel	2976	12	NA	NA	19	-20	intron_retention	FALSE	canonical	3	75	junction_7	60.1771551338213	7	38	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAATAAATGGTAATACTAA	NA	False	NA	NA	False	NA	NA	NA	166838166	166790212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
30709	chr3	-	1850	9	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	8	139	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	278.727213194191	1205	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAAGCTGAGCATGCTCA	NA	False	NA	NA	False	NA	NA	NA	10416365	10404873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10412358_10412472_10413569_10413613_10416301
30711	chr6	-	1371	1	FSM	ENSMUSG00000030309.17	ENSMUST00000203014.2	1163	1	-208	0	-208	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	148745360	148743989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148744000_148745400
30712	chr6	+	2058	6	NIC	ENSMUSG00000030330.16	novel	1487	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	91	junction_4	22.3553125677097	938	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7119	False	NA	NA	False	NA	NA	NA	125016810	125026228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125025201_125025330
30713	chr8	+	1800	4	NNC	ENSMUSG00000031533.5	novel	2625	5	NA	NA	18	-3748	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_3	342.232214861326	3	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTAGCTGATGTCAGCT	NA	False	NA	NA	False	NA	NA	NA	22901431	22912464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22901601_22904731_22905020_22909742_22909902_22911280
30715	chr2	-	3636	8	NIC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	57	-6	intron_retention	FALSE	canonical	2	159	junction_2	35.9023619255995	43	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTATGGTGTTTTCATAC	NA	False	NA	NA	False	NA	NA	NA	128785940	128768193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
30716	chr12	+	2348	12	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	-1672	-19	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	278.776903604784	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAACAATATATGAAGAT	3248	False	NA	NA	False	NA	NA	NA	110450499	110538103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110450715_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
30718	chr11	-	3215	10	NNC	ENSMUSG00000018736.15	novel	2382	9	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.231531004585	3	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGGTCGAGATTGCTTT	NA	False	NA	NA	False	NA	NA	NA	68743949	68712263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_68713492_68716181_68717031_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
30720	chr7	-	2473	2	NIC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	1872	-3	intron_retention	FALSE	canonical	3	14621	junction_1	0	5	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	777	False	NA	NA	False	NA	NA	NA	99130969	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99128678_99129082
30721	chr8	+	1826	8	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	-560	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	517.265257811479	2	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	1734	False	NA	NA	False	NA	NA	NA	120674481	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120674571_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
30723	chr3	-	3412	2	FSM	ENSMUSG00000078784.9	ENSMUST00000190064.2	508	2	-9	-2895	2	0	multi-exon	FALSE	canonical	3	4849	junction_1	0	19	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	NA	False	NA	NA	NA	14676312	14671348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_14674718_14676269
30724	chr9	+	1195	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	-12	355	-12	41	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	43	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAAGCCAGCGGTAGGCA	NA	False	NA	NA	False	NA	NA	NA	64080644	64085593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
30725	chr17	+	1982	17	NNC	ENSMUSG00000038141.12	novel	1517	9	NA	NA	598	24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	261.331379370618	5	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATTGAGTCTGTGGGAG	NA	False	NA	NA	False	NA	NA	NA	6321342	6356063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6321567_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
30726	chr6	-	2078	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	898.309046407272	1	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTCTCAGTCAGAC	NA	False	NA	NA	False	NA	NA	NA	83294577	83282672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286439_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
30727	chr1	-	4308	21	NNC	ENSMUSG00000026425.16	novel	3533	22	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_6	53.5414559010119	5	110	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	NA	False	NA	NA	False	NA	NA	NA	131455083	131222955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247395_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261618_131264123_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284421_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453327_131454970
30729	chrX	-	1264	1	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCCGCCACACGCCGCAGA	2484	False	NA	NA	False	NA	NA	NA	13070073	13068809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13068800_13070100
30731	chrX	-	3983	7	Antisense	novelGene_ENSMUSG00000015291.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	183	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCCTTGCGCGGGAGCC	NA	False	NA	NA	False	NA	NA	NA	73355412	73348623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73349048_73350184_73350291_73350448_73350549_73350706_73350838_73351276_73351866_73352676_73354149_73354251
30733	chr15	-	2284	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	2	3	intron_retention	FALSE	canonical	3	334	junction_10	42.3274142843619	77	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTACACTGTCTTCTT	8668	False	NA	NA	False	NA	NA	NA	76501046	76496587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
30734	chr4	-	1799	7	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	-32	3	intron_retention	FALSE	canonical	3	2647	junction_3	250.029609357683	100	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTGTCCTCATTGATTG	0	True	NA	NA	False	NA	NA	NA	43031402	43028022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43028294_43028937_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970
30735	chr3	-	2451	19	FSM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	-32	0	-17	0	multi-exon	FALSE	canonical	1	38	junction_10	22.0233461984726	238	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGAGTTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	108747859	108700491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
30736	chr15	+	2470	9	NIC	ENSMUSG00000022434.9	novel	596	5	NA	NA	-1	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	59.9904940386392	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTCAACCCTGTGTGCT	6485	False	NA	NA	False	NA	NA	NA	84913147	84947022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_84913265_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
30737	chr7	-	3028	11	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-14	-13	intron_retention	FALSE	canonical	3	1050	junction_5	59.6945558656734	6	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCATCTCAAACCCACCT	NA	False	NA	NA	False	NA	NA	NA	16761748	16738577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
30740	chr7	+	1788	7	NNC	ENSMUSG00000066979.7	novel	2218	8	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	511.845164304814	18	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCCAGGTGTGTTACCT	NA	False	NA	NA	False	NA	NA	NA	131162099	131173621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165099_131169918_131170091_131170233_131170451_131172607
30742	chr14	+	3319	7	ISM	ENSMUSG00000075592.11	ENSMUST00000100529.10	6990	9	119	5221	119	-5221	internal_fragment	FALSE	canonical	3	80	junction_1	7.56453714527348	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCAACTCTGACCCTCTG	NA	False	NA	NA	False	NA	NA	NA	56091611	56106527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_56091884_56100409_56101069_56101189_56102591_56103415_56103547_56103667_56103765_56105477_56105580_56105870
30743	chrX	+	3630	10	FSM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	6	12	6	-12	multi-exon	TRUE	canonical	3	38	junction_7	8.3901765016235	129	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAAGTACAATCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	72760208	72782128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72761537_72764519_72764701_72772589_72772733_72772814_72772984_72774399_72774495_72777614_72777761_72778067_72778214_72780395_72780481_72780708_72780835_72780917
30744	chr6	+	3131	22	NNC	ENSMUSG00000029771.13	novel	403	2	NA	NA	-321	67746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	105	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGTTACCAGGGAAGGGGG	3756	False	NA	NA	False	NA	NA	NA	29540823	29609616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29541305_29554931_29554964_29555153_29555312_29556977_29557071_29558749_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565264_29565669_29565860_29568856_29568992_29571033_29571131_29572588_29572692_29575003_29575154_29578463_29578603_29579520_29579692_29582160_29582310_29586038_29586187_29588013_29588094_29589020_29589235_29602862_29602912_29609365
30746	chr2	-	2860	11	NIC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	-52	-6	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	53.8924855615326	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGGGGATGTTTTTG	5002	False	NA	NA	False	NA	NA	NA	150480087	150460030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150479992
30747	chr8	+	3239	7	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	109	3204	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	324.058336654923	53	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGAAGTTTCTTCAAC	NA	False	NA	NA	False	NA	NA	NA	20016574	20058702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030924_20039783_20039904_20052877_20053142_20055368_20055417_20055523_20055604_20056462
30748	chr4	+	2297	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-8	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	191.173173385342	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATTAGGAACTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	124923842	124949165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934908_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
30749	chr17	-	1666	7	NIC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-65	168	combination_of_known_splicesites	FALSE	canonical	3	97	junction_4	419.803393136464	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCACTCATGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	32253576	32164887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253418
30750	chrX	-	2778	16	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	-56494	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	188.260056541182	7	34	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCTACCATCTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	59223621	59157812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59158819_59160462_59160507_59164448_59164497_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
30753	chr11	+	2668	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	-169	0	-169	0	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	243	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	6287	False	NA	NA	False	NA	NA	NA	87743871	87754629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
30754	chr2	-	1237	7	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	44	-943	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4985.08710778681	231	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAACTTGATTCCTGGG	3676	False	NA	NA	False	NA	NA	NA	154734811	154714280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714642_154719578_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
30755	chr6	-	2122	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_7	180.182372889248	314	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4586	False	NA	NA	False	NA	NA	NA	49240971	49220857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229730_49230043_49240771
30756	chr7	+	4105	13	NNC	ENSMUSG00000030759.17	novel	3972	13	NA	NA	12	177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	182.314955655195	2	133	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTAAGGGTAACATAGAA	NA	False	NA	NA	False	NA	NA	NA	113113099	113169842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_113113236_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160591_113160717_113165599_113165720_113167301
30757	chr9	+	2872	19	NNC	ENSMUSG00000032512.8	novel	3845	19	NA	NA	2	-560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	91.1210868522528	7	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATTTATATTGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	119723962	119754744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736199_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745860_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
30759	chr7	-	3175	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	19	3	-7	-3	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	263	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTTTGGGGTTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	55612205	55581037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
30760	chr3	+	2691	8	NNC	ENSMUSG00000004233.15	novel	3457	7	NA	NA	14	-846	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	19.5865426520666	145	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACGTTGTACTGTGACTT	NA	False	NA	NA	False	NA	NA	NA	99048425	99125673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99112715_99112767_99114027_99114146_99121971_99122091_99123774
30763	chr14	+	3017	4	ISM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	-6	-36	-6	1	intron_retention	FALSE	canonical	3	776	junction_1	5669.1234086252	11	116	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCTCTGCTGCTTATT	NA	False	NA	NA	False	NA	NA	NA	24540828	24545927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450
30764	chr2	+	2553	4	FSM	ENSMUSG00000032966.15	ENSMUST00000148295.8	662	4	-28	-1863	2	-1	multi-exon	FALSE	canonical	3	2063	junction_1	221.63232816737	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTCATGGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	151384506	151403611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377
30765	chr4	+	2414	19	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	26	-379	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	110.887942547732	11	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	NA	False	NA	NA	False	NA	NA	NA	44300901	44364296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709_44364105_44364240
30766	chrX	-	966	6	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	22	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	873.719039508697	7	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537589	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7534190_7534337_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
30767	chr2	-	2860	13	NIC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-14	-46	intron_retention	FALSE	canonical	3	902	junction_4	59.2299544149749	45	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTATAAGCTATGTTTC	3999	False	NA	NA	False	NA	NA	NA	3513794	3489932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_3490107_3490734_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
30768	chr9	+	1937	1	FSM	ENSMUSG00000079884.7	ENSMUST00000182663.3	604	1	-34	-1299	-34	1299	mono-exon	FALSE	NA	NA	NA	NA	NA	681	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33639508	33641445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_33639500_33641400
30769	chr15	+	2147	15	NNC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	-8	-2972	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	489.244878379333	9	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTCAGCGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	84076433	84098496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84077068_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
30772	chr6	+	3793	9	FSM	ENSMUSG00000037997.13	ENSMUST00000039680.7	3746	9	-79	32	-4	-11	multi-exon	FALSE	canonical	3	34	junction_4	10.4403065089106	59	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATCAGGTCTTGGCTGC	NA	False	NA	NA	False	NA	NA	NA	127430606	127471192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
30773	chr10	+	3035	2	ISM	ENSMUSG00000038587.11	ENSMUST00000215696.2	5931	3	8127	3	8127	-3	3prime_fragment	FALSE	canonical	3	1663	junction_1	0	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCACTGTTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	4305894	4309467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_4307940_4308477
30774	chr4	-	1536	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-57	-249	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	1	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTATGTTTTTACCTGG	2556	False	NA	NA	False	NA	NA	NA	129229099	129203558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203676_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
30775	chr13	-	2159	5	FSM	ENSMUSG00000025871.19	ENSMUST00000153708.2	946	5	-44	-1169	-21	-4	multi-exon	FALSE	canonical	3	31	junction_4	214.957408572024	18	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCCCAGGTCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	54713190	54699039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54712994
30776	chr5	+	2275	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	31	4	10	-4	multi-exon	FALSE	canonical	3	61	junction_1	38.7774096607806	353	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTATGTATTTTATT	NA	False	NA	NA	False	NA	NA	NA	138115208	138132523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
30777	SIRV3	+	874	2	FSM	SIRV3A	SIRV302	1807	2	-1	934	-1	170	multi-exon	FALSE	canonical	3	834	junction_1	0	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAACTTTGGATTTCATCA	NA	False	NA	NA	False	NA	NA	NA	1962	6888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_6057
30778	chr7	-	2669	15	ISM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	65	2535	61	-3	5prime_fragment	FALSE	canonical	3	147	junction_14	77.3921896602504	2	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATCTCGAGCAGTTGTGC	NA	False	NA	NA	False	NA	NA	NA	139616114	139578443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
30779	chr9	+	2013	3	NNC	ENSMUSG00000009927.10	novel	577	4	NA	NA	11	-12	intron_retention	FALSE	non_canonical	0	0	junction_2	5616.5	19	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTATTGAATCAAATGAAT	NA	False	NA	NA	False	NA	NA	NA	44318967	44321474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44319055_44319284_44320201_44320464
30780	chr2	-	1868	9	NNC	ENSMUSG00000027496.16	novel	1905	9	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	536.676112753307	2	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTGGGTAATCATTTGA	NA	False	NA	NA	False	NA	NA	NA	172212421	172198109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204792_172205513_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
30781	chr17	+	1553	11	ISM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	79	1380	12	-869	5prime_fragment	FALSE	canonical	3	3235	junction_8	173.147798137891	2	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGGTGAGTATATGATT	NA	False	NA	NA	False	NA	NA	NA	13135347	13142574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416
30782	chr9	+	1243	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-4	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6158.95862610106	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080652	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084274_64084675_64084760_64085002_64085087_64085178_64085300_64085504
30783	chr9	+	3293	10	NNC	ENSMUSG00000032394.7	novel	762	2	NA	NA	-1805	1156	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	40.8686544136242	54	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGTGAGGTTTTTTTTT	3716	False	NA	NA	False	NA	NA	NA	65086214	65094310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65086291_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091114_65091194_65091314_65091523_65092415
30784	chr10	+	1599	7	FSM	ENSMUSG00000071072.13	ENSMUST00000084771.3	1559	7	-31	-9	26	9	multi-exon	FALSE	canonical	2	10	junction_4	1337.80347543609	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTCTTGGCTGTCCTTT	872	False	NA	NA	False	NA	NA	NA	127894848	127912856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127910090_127910154_127911206_127911232_127911935
30786	chr2	+	2574	18	Antisense	novelGene_ENSMUSG00000034906.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCGCGAGCGCCAAGCGC	NA	False	NA	NA	False	NA	NA	NA	126945766	126975817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_126946201_126947765_126947841_126948022_126948115_126949272_126949389_126950402_126950580_126955477_126955591_126958451_126958574_126959424_126959533_126959996_126960148_126963045_126963248_126963959_126964048_126965487_126965645_126966748_126966876_126967470_126967619_126968041_126968128_126969023_126969114_126969403_126969646_126975771
30787	chr17	+	2234	18	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	61	-88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	503.558685240329	2	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACACTTTCTGCAATGTA	NA	False	NA	NA	False	NA	NA	NA	71923270	71964885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932475_71933767_71933887_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
30788	chr10	-	4068	19	Antisense	novelGene_ENSMUSG00000069601.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	69	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTCAGACCGAAACAT	NA	False	NA	NA	False	NA	NA	NA	69841396	69761759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_69762022_69763524_69763647_69768221_69768324_69786778_69786885_69789266_69789301_69791753_69791973_69794740_69794901_69809549_69809767_69811878_69812083_69813539_69813637_69814297_69814528_69815145_69815272_69816099_69816219_69817944_69818028_69830201_69830275_69833922_69834057_69835184_69835328_69837751_69838430_69840437
30789	chr12	-	4091	10	Antisense	novelGene_ENSMUSG00000054309.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	75	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACGGCCATGCACTTC	8775	False	NA	NA	False	NA	NA	NA	21364836	21350129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21350217_21351414_21351574_21352357_21355454_21356770_21356883_21357993_21358092_21358903_21358998_21360195_21360284_21362296_21362369_21363767_21363864_21364647
30790	chr15	-	2188	17	NNC	ENSMUSG00000022350.8	novel	2618	19	NA	NA	2353	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	163.24280947028	3	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGCCCTGCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59222025	59203845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_59204209_59205466_59205555_59206936_59207091_59208211_59208391_59209099_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980
30792	chr4	-	2964	22	FSM	ENSMUSG00000003644.18	ENSMUST00000105894.11	3135	22	167	4	-56	0	multi-exon	FALSE	canonical	3	996	junction_6	97.2257582771271	387	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCGCCCGCTCTTCCTT	8131	False	NA	NA	False	NA	NA	NA	133614941	133574604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133614880
30793	chr8	-	1706	2	ISM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	25721	185	13394	-185	3prime_fragment	FALSE	canonical	3	1215	junction_1	0	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGAGCTTACCGGTGTG	NA	False	NA	NA	False	NA	NA	NA	80412648	80410275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_80411907_80412573
30794	chr11	+	2587	10	NNC	ENSMUSG00000057522.16	novel	3063	10	NA	NA	6	-396	intron_retention	FALSE	canonical	0	0	junction_9	85.204474466637	3	58	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACTGTGTGGTATCTCTG	NA	False	NA	NA	False	NA	NA	NA	95304929	95383836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382596
30798	chr8	-	3492	6	NIC	ENSMUSG00000038515.11	novel	1416	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	349	junction_2	27.7604034552814	10	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTGTTCTCCATTT	3645	False	NA	NA	False	NA	NA	NA	13250612	13226928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
30799	chr17	-	2545	9	FSM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	5	234	0	-2	multi-exon	FALSE	canonical	3	80	junction_1	52.1152568831815	334	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGACATAGGGCCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	47813212	47799208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
30800	chr17	+	5025	4	FSM	ENSMUSG00000067424.14	ENSMUST00000140829.2	758	4	-3	-4264	-3	-1383	multi-exon	FALSE	canonical	3	19	junction_1	2.05480466765633	48	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCGAACAGTCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	33311428	33328296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_33311567_33321204_33321332_33321516_33321578_33323597
30801	chr11	-	3237	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	-32	0	-18	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	922	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	100288607	100261444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
30802	chr4	+	2100	6	NNC	ENSMUSG00000028779.17	novel	1551	5	NA	NA	361	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	88.3026613415473	1287	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	4641	False	NA	NA	False	NA	NA	NA	129996711	130021927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129997068_130001155_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
30804	chr2	-	3683	2	FSM	ENSMUSG00000074825.5	ENSMUST00000110386.2	1898	2	-156	-1629	-20	-8	multi-exon	FALSE	canonical	3	11	junction_1	0	67	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCTCTGTATGAACTGGA	NA	False	NA	NA	False	NA	NA	NA	126985382	126980699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126984135_126985134
30805	chr11	+	2203	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	-24	491	-2	0	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	1176	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	96679960	96698975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
30806	chr16	-	2637	10	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	54	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	315.077572263101	1	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAACCATTGGCTCCTCAT	6320	False	NA	NA	False	NA	NA	NA	38370530	38345503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38355053_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
30807	chr4	-	2735	9	NNC	ENSMUSG00000025413.14	novel	2121	10	NA	NA	2	2	intron_retention	FALSE	canonical	0	0	junction_1	99.5348557039191	3	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTGTGTTGTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	106536096	106519454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_106520631_106522852_106522936_106524692_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
30808	chr4	-	2052	5	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	5	88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.1150734156725	374	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTTTTAGCACTTCTG	NA	False	NA	NA	False	NA	NA	NA	116413127	116408741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116409308_116409505_116409543_116409671_116410927_116411964_116412101_116413069
30809	chr6	+	3804	17	NIC	ENSMUSG00000042810.15	novel	4000	18	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	19.5128163010879	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGGCCATTGGCTTC	NA	False	NA	NA	False	NA	NA	NA	48372595	48393833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_48372822_48379817_48379945_48380311_48380432_48380924_48381075_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
30810	chrX	-	3386	12	NNC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	10	11	intron_retention	FALSE	canonical	0	0	junction_7	276.727332457287	1	147	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTTTGTGAGATGAGGGA	NA	False	NA	NA	False	NA	NA	NA	95000509	94978929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994951_94995509_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
30812	chr4	-	3121	9	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	13	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.829590551153	1	102	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAAGTTTTGTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	126954904	126941378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126941810_126942014_126943700_126944356_126944395_126944536_126944666_126945060_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
30814	chr11	-	2330	3	ISM	ENSMUSG00000001054.10	ENSMUST00000147009.2	601	4	-344	-363	-344	-3	intron_retention	FALSE	canonical	3	275	junction_2	1.5	10	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACCAATGATTGCATGGT	NA	False	NA	NA	False	NA	NA	NA	51517005	51514502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51514974_51515055_51515211_51515301
30815	chr4	-	1216	6	NIC	ENSMUSG00000037188.8	novel	2789	16	NA	NA	21573	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	101.211461801517	13	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCCGGTTTTCATGCGC	NA	False	NA	NA	False	NA	NA	NA	135279368	135269201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279310
30816	chr8	-	1770	14	NNC	ENSMUSG00000031575.19	novel	2234	15	NA	NA	3	-330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1244.13926901696	4	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCAGTACACTTTGATC	NA	False	NA	NA	False	NA	NA	NA	26330107	26307343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26309565_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318884_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039
30818	chr4	-	2204	3	NIC	ENSMUSG00000003038.16	novel	927	4	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	1835	junction_1	392.5	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCCTCTGATCTTTCC	NA	False	NA	NA	False	NA	NA	NA	133695208	133692050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133694107_133694267_133694313_133695105
30819	chr8	-	3136	10	NNC	ENSMUSG00000040010.11	novel	3517	10	NA	NA	346	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	748.909445810835	854	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAAGCTGCTGACTGTGT	NA	False	NA	NA	False	NA	NA	NA	122634087	122607894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_122609835_122610329_122610508_122611721_122611872_122612647_122612745_122613018_122613123_122613596_122613721_122614235_122614281_122615060_122615167_122623166_122623305_122633833
30821	chr8	+	3117	8	NNC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_2	474.786998429349	4	58	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	692	False	NA	NA	False	NA	NA	NA	70755407	70765640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70755583_70757283_70757347_70758288_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
30822	chr11	-	2568	3	NNC	ENSMUSG00000018442.14	novel	1466	7	NA	NA	-7530	-5017	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	186	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGCTGGATCGCACTCC	NA	False	NA	NA	False	NA	NA	NA	70918197	70910408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70910547_70915369_70915536_70915933
30823	chr4	+	1797	7	FSM	ENSMUSG00000029076.15	ENSMUST00000105578.2	1654	7	17	-160	17	160	multi-exon	FALSE	canonical	3	13	junction_1	268.571995313485	52	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGAAATGATCAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	156077850	156094935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_156078027_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
30824	chr11	-	3533	13	NIC	ENSMUSG00000020805.15	novel	3329	12	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	3	8	junction_12	13.363247692417	116	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGTGCCTGGCCTT	NA	False	NA	NA	False	NA	NA	NA	72158055	72132819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_72134463_72135951_72136090_72138492_72138655_72141551_72141671_72143083_72143185_72144009_72144229_72148185_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289_72157411_72157771
30825	chr9	-	736	3	Antisense	novelGene_ENSMUSG00000032398.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1371	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGCGGTGATGACGTCAC	NA	False	NA	NA	False	NA	NA	NA	64089943	64086576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64086701_64087778_64087869_64089421
30826	chr18	-	2659	1	Intergenic	novelGene_4507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCAGAGCTTAACCCCAA	NA	False	NA	NA	False	NA	NA	NA	10746853	10744194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_10744200_10746900
30828	chr17	-	3203	9	NNC	ENSMUSG00000024142.16	novel	3358	9	NA	NA	-4	-15	intron_retention	FALSE	non_canonical	0	0	junction_1	26.7578843520933	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTGTATGAACCATCAG	9614	False	NA	NA	False	NA	NA	NA	24698025	24692543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24693061_24693328_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697453_24697985
30829	chr4	+	2646	16	NNC	ENSMUSG00000011257.20	novel	3019	15	NA	NA	-37	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.664130849758	726	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGATGCCAGTTTTATGT	NA	False	NA	-64	True	NA	NA	NA	123176580	123192624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_123176859_123177353_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
30830	chr11	+	2309	7	NIC	ENSMUSG00000017801.16	novel	1965	8	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	155	junction_1	42.4264068711929	628	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGATTGTTTTAAGTCCTT	8249	False	NA	NA	False	NA	NA	NA	100978128	100983031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980696_100981934
30832	chr15	-	2375	4	NNC	ENSMUSG00000037465.11	novel	3044	4	NA	NA	-6	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1099.18343429212	14	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACCTTGTTTACAATAAA	NA	False	NA	NA	False	NA	NA	NA	38300956	38294693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38295958_38297045_38297772_38297865_38298097_38300802
30833	chr1	+	2339	19	ISM	ENSMUSG00000040782.13	ENSMUST00000076894.11	5116	20	7240	2248	5	292	3prime_fragment	TRUE	canonical	3	188	junction_3	52.2563718130309	1	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATACAACGCTCACACATAA	NA	False	NA	NA	False	NA	NA	NA	159067135	159172962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_159067192_159072158_159072257_159076771_159076849_159077592_159077713_159080117_159080187_159094326_159094387_159095678_159095756_159105658_159105717_159112117_159112233_159116474_159116611_159134142_159134287_159135979_159136089_159136452_159136535_159147293_159147411_159152486_159152605_159154646_159154772_159156171_159156333_159170376_159170422_159172390
30834	chr4	+	3167	2	FSM	ENSMUSG00000051675.14	ENSMUST00000050850.14	3194	2	27	0	27	0	multi-exon	FALSE	canonical	3	75	junction_1	0	190	43	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	NA	False	NA	NA	NA	65523249	65534475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_65523307_65531365
30836	chr7	-	1658	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	4	-6	4	4	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	2189	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCTTGTCGTTCTTTGTG	7996	False	NA	NA	False	NA	NA	NA	140752766	140740234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
30837	chr16	+	3282	20	ISM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	285	0	0	0	intron_retention	FALSE	canonical	2	77	junction_5	14.9080282894561	159	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	17326836	17344197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286
30838	chr9	-	3043	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	8	-1109	8	1109	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	544	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAAGCCTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	27066681	27007570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
30839	chr4	-	2195	10	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-3	-13	intron_retention	FALSE	canonical	3	11	junction_9	101.24716121611	3	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGGTCCTACACTTCCTG	NA	False	NA	NA	False	NA	NA	NA	147952983	147945260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952825
30841	chr18	+	2802	17	NNC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	3708	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	475.745204915404	1	124	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35686462	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715135_35715780_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
30842	chr1	-	3062	2	NIC	ENSMUSG00000043716.14	novel	1597	5	NA	NA	3	132	intron_retention	FALSE	canonical	3	7228	junction_1	0	1	130	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTTTTCTCTGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	16174623	16171386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16173559_16173733
30843	chr19	+	1979	7	ISM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	40066	10554	-2979	-3319	internal_fragment	FALSE	canonical	3	314	junction_4	25.130769099961	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGGCTACAGTGGGACAT	NA	False	NA	NA	False	NA	NA	NA	3413350	3425179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092
30844	chr7	-	2619	2	NIC	ENSMUSG00000074129.15	novel	992	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	18396	junction_1	0	1	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44776219_44776414
30845	chr3	+	2750	5	NIC	ENSMUSG00000028019.10	novel	2818	7	NA	NA	-187	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	37.9110801745347	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAAGTGTTCGTCTAAGT	NA	False	NA	NA	False	NA	NA	NA	80944291	81121341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_80944862_81082122_81082304_81111541_81111750_81116350_81116569_81119768
30846	chrX	-	4774	4	ISM	ENSMUSG00000042225.4	ENSMUST00000041317.3	5437	6	88505	30	88505	-30	3prime_fragment	FALSE	canonical	3	79	junction_1	6.97614984548545	79	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTATTACCCAATAAAATGT	NA	False	NA	NA	False	NA	NA	NA	141661219	141634171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_141638644_141640471_141640569_141641876_141641968_141661105
30847	chr17	+	868	8	ISM	ENSMUSG00000024158.18	ENSMUST00000024974.16	1101	9	2208	0	2127	0	3prime_fragment	FALSE	canonical	3	330	junction_5	24.6560006356858	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	NA	False	NA	NA	NA	25071848	25083424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
30848	chr9	-	4434	2	FSM	ENSMUSG00000079427.11	ENSMUST00000185519.7	1103	2	-3330	-1	30	1	multi-exon	FALSE	canonical	3	527	junction_1	0	9	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGAAATCAATAGAAATT	NA	False	NA	NA	False	NA	NA	NA	88601593	88570657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88571039_88597540
30849	chr17	+	2762	9	FSM	ENSMUSG00000052712.18	ENSMUST00000064709.13	2812	9	23	27	-14	-27	multi-exon	FALSE	canonical	3	208	junction_1	54.6168472176855	931	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGGAGTATACCATTGC	334	False	NA	NA	False	NA	NA	NA	29487784	29521837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
30850	chr15	+	1531	4	NNC	ENSMUSG00000043091.10	novel	1982	4	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2450.08040684382	13	64	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTAAGTTGCAAACTGGC	NA	False	NA	NA	False	NA	NA	NA	98928201	98935979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98928306_98931974_98932198_98932329_98932479_98934924
30851	chr7	+	3213	5	NNC	ENSMUSG00000012848.16	novel	794	6	NA	NA	0	-9	intron_retention	FALSE	non_canonical	0	0	junction_1	7098.6524953684	6	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACAACTATACCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	12656257	12660602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12658472_12658861_12659529_12659663_12659793_12660322_12660422_12660498
30852	chr9	-	3620	17	NNC	ENSMUSG00000031996.18	novel	3634	17	NA	NA	4	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	358.560468226769	1	159	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAATAAACACTTTAACGT	8719	False	NA	NA	False	NA	NA	NA	31123107	31060879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069801_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
30854	chr16	-	2480	6	NNC	ENSMUSG00000004071.14	novel	3953	6	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	192.330548795557	3	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCATATTTCTATTTTAG	NA	False	NA	NA	False	NA	NA	NA	4607794	4584709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4587998_4588544_4588600_4607694
30855	chr2	-	2132	11	NIC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	-12	4	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	84.6070919013294	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGCAGTTGTGATG	NA	False	NA	NA	False	NA	NA	NA	5900157	5875835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_5876833_5878553_5878631_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
30856	chr6	+	1540	9	ISM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	15889	1219	-5069	-154	3prime_fragment	FALSE	canonical	3	791	junction_1	68.3418566838801	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTTCCCCAGACCACTGT	NA	False	NA	NA	False	NA	NA	NA	87880684	87889358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
30857	chr16	+	1769	9	NNC	ENSMUSG00000002845.15	novel	2667	9	NA	NA	-12	38	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	296.24135008469	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	38383210	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383410_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
30858	chr18	-	990	3	ISM	ENSMUSG00000024378.10	ENSMUST00000141617.2	979	5	-1	2874	-1	-2874	5prime_fragment	FALSE	canonical	3	38	junction_1	6	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGACGAAATTCATCTTT	NA	False	NA	NA	False	NA	NA	NA	33346875	33340593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_33341280_33342095_33342211_33346686
30859	chr17	-	1198	6	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-213	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821661	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184_35821422_35821462
30860	chr4	+	3425	3	NIC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	0	-11	intron_retention	FALSE	canonical	3	455	junction_1	292.5	37	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGCAGTGACTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	134195709	134201143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_134195741_134197413_134200307_134200642
30861	chr9	+	1303	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1447	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6356.36770171259	3	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082121	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64082992_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
30862	chr8	+	2981	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	20	0	10	0	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	149	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	7220	False	NA	NA	False	NA	NA	NA	69661709	69683188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
30863	chr2	-	5750	28	NNC	ENSMUSG00000068394.5	novel	5768	28	NA	NA	15	0	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	8.19933417618679	31	34	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCATGACTTATTTT	NA	False	NA	NA	False	NA	NA	NA	125467018	125405007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_125406318_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125413588_125413754_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436992_125443068_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456349_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
30864	chr7	+	2669	13	ISM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	22	5762	11	2620	5prime_fragment	FALSE	canonical	3	472	junction_5	50.9118928476769	124	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTGGTTGACATAGGAA	4728	False	NA	NA	False	NA	NA	NA	46445548	46467462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320
30865	chr10	-	2963	6	FSM	ENSMUSG00000019837.9	ENSMUST00000217537.2	2526	6	-441	4	-4	-4	multi-exon	FALSE	canonical	3	403	junction_5	105.423716496811	1753	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGATAATAGTTGATGGT	8145	False	NA	NA	False	NA	NA	NA	40134108	40123702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133574
30866	chr9	-	3142	3	NNC	ENSMUSG00000051234.7	novel	1232	3	NA	NA	-7	-68	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	552.5	83	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGTTTGATATATACTC	3771	False	NA	NA	False	NA	NA	NA	96360670	96353057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96355008_96355076_96356059_96360460
30867	chr18	+	3430	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	333	0	-16	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	1	164	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13105312	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
30869	chr6	-	2317	16	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-27	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	172.203755282321	13	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTAAGCATCCTGTCCTG	3466	False	NA	NA	False	NA	NA	NA	125168593	125144976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150663_125164039_125164116_125166725_125166872_125168460
30870	chr17	-	2164	18	ISM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	1978	2705	142	-196	3prime_fragment	FALSE	canonical	3	500	junction_14	36.7463954402969	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTTTCTCATGTGA	NA	False	NA	NA	False	NA	NA	NA	24924656	24919627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538
30871	chr14	-	2790	14	NNC	ENSMUSG00000022031.7	novel	2851	15	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	131.757712011693	1	82	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAAAGAGTCGTCGTGT	3474	False	NA	NA	False	NA	NA	NA	65830494	65767905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65769109_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
30872	chr11	+	1895	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	-62	0	-10	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	1210	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9128	False	NA	NA	False	NA	NA	NA	70538050	70542247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
30873	chr10	+	2118	14	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-41	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	140.288797648145	1	27	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATATCATGGACTTTAG	NA	False	NA	NA	False	NA	NA	NA	75399940	75422020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75400093_75400654_75400740_75409444_75409587_75410065_75410231_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
30875	chr4	-	1973	3	NIC	ENSMUSG00000003038.16	novel	711	5	NA	NA	0	-14	intron_retention	FALSE	canonical	3	2620	junction_2	297	5	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGGCTTGGAATGCTGCC	NA	False	NA	NA	False	NA	NA	NA	133695205	133692062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133692885_133693261_133694313_133695105
30876	chr17	-	2191	11	NIC	ENSMUSG00000063576.13	novel	2100	12	NA	NA	-21	-11	intron_retention	FALSE	canonical	3	322	junction_10	44.3355387922601	865	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAACCTCCAAACGTGTC	NA	False	NA	NA	False	NA	NA	NA	46991861	46985489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
30877	chr9	+	2027	9	NNC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	319	3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	548.353216458151	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATTTTTGCTTCTACGA	NA	False	NA	NA	False	NA	NA	NA	65537248	65567813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65537431_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
30878	chrX_GL456233v2_random	-	2560	8	Intergenic	novelGene_4784	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	354	junction_1	19.1641672431246	1110	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAGTTCTTAGTATAGT	NA	False	NA	NA	False	NA	NA	NA	134123	105691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_GL456233v2_random_-_107510_109039_109133_116592_116661_119836_119928_123935_124074_125547_125606_127389_127545_133984
30879	chr2	+	3120	14	NNC	ENSMUSG00000026843.16	novel	3648	18	NA	NA	-1	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	245.49428463201	3	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTTCTTAGTCTGTTTT	632	False	NA	NA	False	NA	NA	NA	31462801	31507527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473268_31482477_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495273_31503053_31503120_31504722_31504795_31505509
30880	chr16	-	3197	15	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	15	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	479.784799760927	1	139	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTGCAAGAAAAAAAAATAAA	8131	False	NA	NA	False	NA	NA	NA	4867706	4831804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837154_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865618_4865678_4867655
30881	chr6	-	3792	10	Antisense	novelGene_ENSMUSG00000030204.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	110	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGGGCTCCAGAGG	NA	False	NA	NA	False	NA	NA	NA	135000703	134988652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_134988691_134989263_134989357_134992155_134992346_134992537_134992608_134992781_134993619_134994087_134994199_134995011_134995157_134995932_134997650_134998412_134998541_135000240
30882	chr9	+	1813	14	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	146	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	341.497970572777	22	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	59446968	59472392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471266_59472135
30884	chr12	+	4164	4	NNC	ENSMUSG00000021096.12	novel	1103	3	NA	NA	-23116	77	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	192.820008182646	85	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGATCCTTGCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	72781112	72836251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_72781169_72782330_72782779_72830456_72831311_72833445
30885	chr14	-	2956	1	NIC	ENSMUSG00000022159.17	novel	2906	8	NA	NA	4368	-12	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCATGATCCAAGCTACT	NA	False	NA	NA	False	NA	NA	NA	52502195	52499239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52499200_52502200
30886	chr4	-	1111	1	FSM	ENSMUSG00000100863.2	ENSMUST00000122162.2	1009	1	95	-197	95	197	mono-exon	FALSE	NA	NA	NA	NA	NA	10	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTAGAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	91694697	91693586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91693600_91694700
30887	chr6	-	3506	5	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	-7	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	333.387443524797	1	167	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAACATGTTAGCAACAT	4230	False	NA	NA	False	NA	NA	NA	35516741	35486000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35488186_35488397_35489253_35498834_35498919_35499616_35499731_35516473
30889	chr15	-	1776	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	1	-6	1	-2	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	90	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTTCTTTTATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99149825	99140700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
30890	chr11	-	2746	10	NNC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	16	50	intron_retention	FALSE	canonical	0	0	junction_9	353.307057024354	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGTGCACATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	96807306	96798591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804663_96807209
30891	chr6	+	1468	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	4017	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2053.24139404558	35	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTAGTGGTCTTATCTT	NA	False	NA	NA	False	NA	NA	NA	122688543	122691585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122688763_122689587_122689675_122690100_122690142_122690464
30892	chr5	+	3764	9	FSM	ENSMUSG00000029120.11	ENSMUST00000031003.11	4088	9	295	29	145	-29	multi-exon	FALSE	canonical	3	174	junction_3	14.0890028036054	1	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCAATAAAATAACAAATGT	NA	False	NA	NA	False	NA	NA	NA	37026151	37112393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_37026235_37080311_37080410_37083628_37083795_37084874_37084988_37088579_37088758_37097440_37097606_37104411_37104582_37106896_37106989_37109694
30894	chr16	-	2802	26	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGACGTGGATGTCTGA	NA	False	NA	NA	False	NA	NA	NA	48451138	48251678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48251766_48257637_48257703_48266669_48266742_48269662_48269754_48270360_48270469_48272791_48272953_48281040_48281149_48300190_48300305_48319111_48319189_48320455_48320524_48322663_48322731_48330557_48330704_48334948_48335104_48378731_48378868_48381936_48382000_48385937_48386078_48402777_48402843_48407250_48407500_48412874_48413004_48432635_48432723_48436055_48436123_48438862_48439009_48442931_48443011_48444650_48444704_48447272_48447468_48451064
30895	chr8	-	1831	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-77	18	-77	-18	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	3	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGGAAATAAAACACTAGA	NA	False	NA	NA	False	NA	NA	NA	43760094	43748121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
30896	chr11	+	2820	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	2	5	-1	1	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	2	115	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGATGCGCTTGTTGGG	NA	False	NA	NA	False	NA	NA	NA	20151433	20176851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
30897	chr16	+	2519	20	ISM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	92	565	-7	-4	intron_retention	FALSE	canonical	3	293	junction_13	17.1880587292715	282	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATCTCTTTTGCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	20367418	20379564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932
30898	chr12	+	2080	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	45	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1935.17527837266	2	102	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758284	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762769_24762874_24762974_24763078
30899	chr7	+	1912	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-53	6416	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	103.95281381473	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCATGAATAAACCGAAAAT	9945	False	NA	NA	False	NA	NA	NA	42863409	42882682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135_42876337_42882321
30900	chr3	-	1665	10	ISM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	7619	1703	7564	44	3prime_fragment	FALSE	canonical	3	2549	junction_7	111.60645142643	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTGGGTCTCCCTGG	NA	False	NA	-47	True	NA	NA	NA	108344895	108333883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824
30901	chr11	-	2440	11	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	197.367297189783	424	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGCCGATATTTCTTT	977	False	NA	NA	False	NA	NA	NA	79145495	79130210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79130445_79130573_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141908_79145178
30902	chr8	+	2595	4	NNC	ENSMUSG00000052446.18	novel	2689	4	NA	NA	12346	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	80	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATGACTTTGAAAATT	NA	False	NA	NA	False	NA	NA	NA	72719636	72724156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72719825_72719943_72720005_72721744_72723516_72723581
30903	chr18	-	6307	12	NNC	ENSMUSG00000052026.9	novel	3366	14	NA	NA	112	-37	intron_retention	FALSE	canonical	0	0	junction_1	5.70920671567548	5	175	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTAGGTTGTCAATAAAT	NA	False	NA	NA	False	NA	NA	NA	61147166	61128488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61129904_61133489_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135511_61136312_61136438_61136554_61136663_61137460_61137596_61138783_61140682_61140787_61142678_61147048
30904	chr15	-	2650	6	Antisense	novelGene_ENSMUSG00000116024.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAAAGGGCTTTGCAAG	NA	False	NA	NA	False	NA	NA	NA	76776595	76763517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76763552_76764936_76764978_76765309_76765437_76772428_76772545_76774203_76775080_76775139
30906	chr4	-	682	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	-13	10	-7	-10	multi-exon	FALSE	canonical	3	56	junction_2	2	6609	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGATGAAGAAAGCGTGGT	-23	True	NA	NA	False	NA	NA	NA	45108121	45105221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_45105645_45106838_45106889_45107912
30907	chr1	-	2419	12	NNC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	39	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	435.682707354335	3	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGTGTTTATTATGTG	NA	False	NA	NA	False	NA	NA	NA	65225558	65197780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218896_65218975_65220457_65220529_65220786_65220858_65225463
30908	chr17	-	3082	11	FSM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	83	8	-30	-1	multi-exon	FALSE	canonical	3	238	junction_4	23.9309423132479	1	121	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACCAGCTTGGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	26160939	26145402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
30911	chr2	-	2312	14	NNC	ENSMUSG00000009566.13	novel	2273	15	NA	NA	-3	-3	intron_retention	FALSE	non_canonical	0	0	junction_8	103.005141481373	5	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTCCTATTCTCCTAGC	NA	False	NA	NA	False	NA	NA	NA	32584150	32572624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577680_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
30912	chr8	-	2407	10	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	1	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_7	74.6770826068257	32	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTTTATTGCTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	43633311	43582842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43596978_43597564_43618053_43618097_43633233
30913	chr19	+	6396	16	Antisense	novelGene_ENSMUSG00000035173.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	101	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCGACGCCTAAGCCGG	NA	False	NA	NA	False	NA	NA	NA	56775956	56810613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_56779478_56780371_56780593_56781727_56781938_56783520_56783598_56785872_56786069_56787001_56787255_56788495_56788644_56789346_56789432_56789598_56789697_56790315_56790421_56795396_56795517_56796408_56796622_56797623_56797756_56798672_56798795_56801420_56802122_56810419
30914	chrX	+	2760	6	NIC	ENSMUSG00000094885.8	novel	2028	7	NA	NA	-17	-4	intron_retention	TRUE	canonical	0	0	junction_1	4.31740662898458	8	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATTTCTTTTTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	147880930	147921144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_147881040_147898081_147899007_147902668_147903628_147912815_147912898_147913703_147913754_147920509
30915	chr2	-	3606	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-16	2331	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	72.3204673657465	2	88	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGCATCAAGATGGTCT	NA	False	NA	NA	False	NA	NA	NA	156681828	156672637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156675347_156676378_156676959_156679742_156679834_156680337_156680454_156681718
30916	chr2	-	2233	12	NNC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	92	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	169.964896716065	2	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCTCTCTAGACCCTGA	NA	False	NA	NA	False	NA	NA	NA	30068349	30063483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30066966_30067095_30067334_30067495_30067614_30067734_30067931
30917	chr15	-	4216	26	FSM	ENSMUSG00000059323.15	ENSMUST00000168185.8	4235	26	15	4	-14	-3	multi-exon	FALSE	canonical	3	178	junction_21	25.6881606970994	235	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCATTTGTGTCAGCTCTC	NA	False	NA	NA	False	NA	NA	NA	76524143	76510441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
30918	chr3	-	2226	2	ISM	ENSMUSG00000052544.10	ENSMUST00000199707.2	416	3	19055	-1889	19055	1889	3prime_fragment	FALSE	canonical	3	111	junction_1	0	5	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTCAATGTGAGCGTT	NA	False	NA	NA	False	NA	NA	NA	152912365	152909113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_152911229_152912254
30921	chr19	+	2176	5	NNC	ENSMUSG00000071653.10	novel	500	5	NA	NA	5	1746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1396.00770055183	5	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8866283	8869991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774_8868220_8868528
30922	chr17	+	2366	16	NNC	ENSMUSG00000002372.10	novel	2373	16	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	106.525030965601	10	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	NA	NA	NA	56980313	57018764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017727_57017855
30923	chr3	-	2714	7	FSM	ENSMUSG00000027534.17	ENSMUST00000099223.11	2512	7	13	-215	-2	215	multi-exon	FALSE	canonical	3	23	junction_1	44.7837396086273	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAGTCTACTTTTTCATC	NA	False	NA	NA	False	NA	NA	NA	10505149	10482661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_10484284_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
30926	chr12	-	1776	7	NNC	ENSMUSG00000076432.14	novel	1970	7	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1272.61319077453	3	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	21467536	21440329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_21440752_21440812_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
30927	chrX	+	572	1	Genic_Genomic	ENSMUSG00000087193.8	novel	NA	NA	NA	NA	-208	-10289	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCGACAACACAGATGGAA	7443	False	NA	NA	False	NA	NA	NA	7915202	7915774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_7915200_7915800
30929	chr14	+	2115	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	1	31	1	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	1	126	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	113552040	113554155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_113552000_113554200
30930	chr15	+	2129	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	-17	2	-17	-1	multi-exon	TRUE	canonical	3	579	junction_9	64.3868516598433	1419	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGCACTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	81900552	81924284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
30932	chr9	+	4483	16	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	27	22	intron_retention	FALSE	canonical	3	75	junction_12	73.0815678236007	16	155	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCCTCACGTGTCACTG	NA	False	NA	NA	False	NA	NA	NA	109760894	109910885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070_109907153_109908848_109908962_109910488_109910679_109910802
30934	chr2	-	1819	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	-11	-3	-2	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	956	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCTAGACCCTGATGCT	NA	False	NA	NA	False	NA	NA	NA	30068473	30063479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
30937	chr11	-	2919	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	-4	0	-2	0	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	379	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	5003	False	NA	NA	False	NA	NA	NA	63970296	63853452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
30938	chr10	+	1839	11	Antisense	novelGene_ENSMUSG00000036112.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGCCATGTTGCCCGAGA	5696	False	NA	NA	False	NA	NA	NA	93696791	93725541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_93697464_93698237_93698354_93698790_93698898_93701270_93701366_93704728_93704822_93705976_93706164_93707352_93707509_93715399_93715507_93715933_93715990_93722848_93722966_93725408
30940	chr7	+	2734	5	NIC	ENSMUSG00000004610.5	novel	893	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	1745	junction_1	116.056020955399	23	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGCCTCTTTCCTCAT	1946	False	NA	NA	False	NA	NA	NA	43093544	43107205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43106062_43106993
30941	chr13	-	1572	14	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2924.3222974577	3	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5123	False	NA	NA	False	NA	NA	NA	58549958	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542415_58543437_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
30942	chr12	-	2720	10	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	-8	-32	intron_retention	FALSE	non_canonical	0	0	junction_4	804.697381966171	2	129	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAGGAAAAAACAATAAACT	NA	False	NA	NA	False	NA	NA	NA	108860071	108825991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841061_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108860018
30943	chr8	+	2764	5	NNC	ENSMUSG00000059897.6	novel	3001	4	NA	NA	41	-17	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	40.4722126896961	532	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTTAACTACTTAGCC	7251	False	NA	NA	False	NA	NA	NA	69661740	69683171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494_69681105_69681273
30944	chr11	-	1730	10	ISM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	1340	6	-94	-5	3prime_fragment	FALSE	canonical	3	12659	junction_4	747.862138216515	3	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGTTTGGGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	69561803	69557767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753
30945	chr19	-	1120	6	FSM	ENSMUSG00000024963.13	ENSMUST00000025915.13	1074	6	-46	0	23	0	multi-exon	FALSE	canonical	3	154	junction_3	27.3978101314685	559	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9968	False	NA	NA	False	NA	NA	NA	6969917	6965278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526
30946	chr11	+	2831	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	90	11	7	0	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	1	105	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117223260	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
30947	chr9	+	2169	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	27	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	192.749189362757	23	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCTGTGTCTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	77824672	77891798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77891091_77891673
30948	chr2	+	1853	10	NIC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	86.9850278020786	1695	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	-3	True	NA	NA	False	NA	NA	NA	13578768	13587636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_13578872_13579204_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
30949	chr10	+	2590	13	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	-9	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	198.672608971533	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGCAGAAGTTTGTAAAA	999	False	NA	NA	False	NA	NA	NA	127851055	127865854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854474_127855307_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
30950	chr10	-	2736	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	118	19	32	-19	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	212	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGTGAATATATACATCCA	NA	False	NA	NA	False	NA	NA	NA	22607228	22579796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
30952	chrX	+	1669	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	12	284	12	-284	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	25	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCTGGCCAAATATCTT	NA	False	NA	NA	False	NA	NA	NA	139357373	139376605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
30953	chr11	+	2331	9	NIC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	67	-2	intron_retention	FALSE	canonical	0	0	junction_3	236.614533577293	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCACCCCCCGGTCTCTG	1297	False	NA	NA	False	NA	NA	NA	101010830	101017243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101011069_101011372_101011486_101011656_101011825_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028
30955	chr10	+	2689	15	FSM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	41	8203	41	-8203	multi-exon	FALSE	canonical	3	732	junction_5	67.3298687395854	317	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCTTTAGTTTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	44943339	45035091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_44943472_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973611_44983867_44983974_44991158_44991351_44996738_44996937_45002059_45002164_45024080_45024218_45026531_45026627_45029150_45029283_45031611_45031769_45034327
30956	chr10	-	2234	7	NNC	ENSMUSG00000025358.17	novel	2240	7	NA	NA	4	1	intron_retention	FALSE	canonical	0	0	junction_4	533.003335407533	2	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGAATCTCTTTCATATT	8303	False	NA	NA	False	NA	NA	NA	128540844	128533806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538481_128539575_128539697_128539794_128539862_128540576
30957	chr1	+	2499	9	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	4	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	809.469492553611	1	113	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTGTTGTTAAACATA	NA	False	NA	NA	False	NA	NA	NA	4928040	4968112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4948211_4948356_4956966_4957055_4959679_4959826_4960962_4961029_4962149_4962293_4963639_4963787_4965156_4965229_4966578
30959	chr10	-	1603	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	1250	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	793.185574359431	1	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGGCTGCTTCTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	127356983	127352993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353092_127353631_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355259_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786
30960	chr12	+	2151	10	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	154.00921889995	869	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGATGGGTGTGCTACTA	NA	False	NA	NA	False	NA	NA	NA	109506881	109538161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512069_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
30961	chr6	+	2008	11	NNC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	151.836787373811	896	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTGTTGTTAAGTCAAGA	NA	False	NA	NA	False	NA	NA	NA	72575584	72584471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72575780_72577955_72578160_72578434_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
30964	chr8	-	2290	12	NNC	ENSMUSG00000057788.14	novel	2163	13	NA	NA	15	134	intron_retention	FALSE	canonical	0	0	junction_11	109.670430407586	1	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTGACTTGAGAATGGGG	10001	False	NA	NA	False	NA	NA	NA	70755069	70746101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747486_70748016_70748115_70748224_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754968
30965	chr18	-	3548	1	ISM	ENSMUSG00000056124.6	ENSMUST00000070080.6	5808	9	58255	3	58255	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	128	64	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTGGTGATGTCATT	NA	False	NA	NA	False	NA	NA	NA	20821206	20817658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_20817700_20821200
30966	chr8	-	1718	13	NNC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	-5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	448.446291532095	6	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737912	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726785_112728416_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
30968	chr16	+	2005	12	NIC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	2474	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	197.434579603322	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTAGTTTGATATGGTA	NA	False	NA	NA	False	NA	NA	NA	18633579	18654005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18633687_18634078_18634112_18634601_18634767_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
30969	chr7	-	2140	13	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_12	122.006830409886	1076	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976622	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008_125976218_125976289
30970	chr11	+	1460	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	20	352	20	-352	multi-exon	FALSE	canonical	3	1066	junction_1	20	35	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTTTGGCGTCAGAGC	NA	False	NA	NA	False	NA	NA	NA	51858507	51867809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51858785_51860970_51861071_51866726
30971	chr9	-	3328	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	-28	162	0	-160	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	1	151	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTTTCTGTGACTCAC	8715	False	NA	NA	False	NA	NA	NA	31123111	31061014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
30972	chr8	-	2881	5	NNC	ENSMUSG00000038697.16	novel	2912	5	NA	NA	10306	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	259.616544156955	229	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAAAATGTGTGGCATC	NA	False	NA	NA	False	NA	NA	NA	124737373	124723057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124737255
30973	chr7	-	3024	7	FSM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	4	6	-3	-6	multi-exon	FALSE	canonical	3	20	junction_3	6.10100173924104	13	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCACTAATTTGTCATTG	NA	False	NA	NA	False	NA	NA	NA	4448644	4428671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448445
30974	chr16	-	2277	18	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	124.092247191953	5	25	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	13486019	13355823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13356767_13358918_13359046_13446220_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466278_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
30975	chr15	-	1600	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	130	13	3	-13	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	6	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAAAGAGTTTTGTTT	161	False	NA	NA	False	NA	NA	NA	98832316	98829318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
30977	chr16	-	2204	19	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	2	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	475.940294133883	1	61	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCCCCGTGGCAGACGT	NA	False	NA	NA	False	NA	NA	NA	3895689	3857846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863437_3863743_3863927_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878658_3878740_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886727_3886886_3895556
30978	chr15	+	2020	1	NIC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	-2279	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	24	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATTTTTGGATCAAGT	35	False	NA	NA	False	NA	NA	NA	10486134	10488154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_10486100_10488200
30979	chr9	+	1820	8	NNC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	83	-12	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_5	564.138751205982	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGAAGTGACTCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	65537923	65567796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558900_65558987_65566416_65566487_65566719
30980	chr8	-	2939	4	FSM	ENSMUSG00000046691.15	ENSMUST00000175940.2	2890	4	-45	-4	-45	4	multi-exon	FALSE	canonical	3	18	junction_3	147.606082379947	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGCTCCATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	107619892	107610521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107619764
30981	chr17	-	3397	20	Antisense	novelGene_ENSMUSG00000061950.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGCCGGGGGAGAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	66148839	66090617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_66090664_66110205_66110289_66110852_66110961_66117531_66117674_66118235_66118385_66120452_66120559_66120680_66120747_66121298_66121459_66122916_66123044_66131252_66131783_66136367_66136541_66137989_66138086_66139946_66140133_66141975_66142134_66142972_66143079_66144678_66144799_66144883_66145013_66145805_66145953_66147849_66148031_66148255
30983	chr14	+	1591	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	165	6	113	-3	multi-exon	FALSE	canonical	3	2255	junction_1	40	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6704	False	NA	NA	False	NA	NA	NA	76742082	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
30984	chr1	-	2466	13	NNC	ENSMUSG00000026341.17	novel	2554	13	NA	NA	-3	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1048.46025662503	9	72	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTACCCTTCCTGATGG	NA	False	NA	NA	False	NA	NA	NA	125363447	125320654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125321756_125322788_125322889_125324843_125324970_125325190_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
30985	chr11	-	1863	6	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	55	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	551.797571578564	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTAAAATGTCCACTGAAT	8248	False	NA	NA	False	NA	NA	NA	102907939	102884884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102895786_102895969_102907871
30986	chr8	+	490	2	Antisense	novelGene_ENSMUSG00000031951.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCAGGGCCGCAGCGCCG	NA	False	NA	NA	False	NA	NA	NA	112659811	112660399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112660161_112660258
30987	chr9	+	3151	20	Intergenic	novelGene_1004	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	67	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTCCTCCCAGCTCAGG	NA	False	NA	NA	False	NA	NA	NA	31000704	31043092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_31001318_31001694_31001837_31002636_31002904_31006826_31006908_31006944_31007019_31007775_31007894_31008149_31008263_31008367_31008479_31008851_31008960_31011435_31011558_31011673_31011790_31014169_31014269_31014980_31015121_31017308_31017553_31017785_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
30989	chr9	+	3227	23	NNC	ENSMUSG00000036768.7	novel	4858	35	NA	NA	195	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	78.1631055830061	1	66	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAACAATGTGTATAA	NA	False	NA	NA	False	NA	NA	NA	122815701	122847787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_122815717_122816910_122817076_122820164_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825460_122826846_122827013_122828248_122828391_122828579_122828666_122830109_122830180_122831099_122831187_122832634_122832740_122833635_122833759_122836378_122836526_122838381_122838484_122838824_122838990_122840592_122840703_122843004_122843078_122843533_122843572_122846309_122846476_122846651_122846784_122847132
30990	chr15	+	976	8	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	120	-69773	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	442.106645182229	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAAGTCTCATCTCATCC	NA	False	NA	NA	False	NA	NA	NA	85220565	85277640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271249_85277549
30992	chr4	+	3071	15	NNC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	71.989086474469	1	103	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603908	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634561_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
30993	chr10	-	4252	21	Antisense	novelGene_ENSMUSG00000069601.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	69860923	69761770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_69762020_69763518_69763647_69768221_69768324_69786778_69786888_69789268_69789301_69791753_69791976_69794744_69794901_69809549_69809767_69811878_69812083_69813539_69813638_69814297_69814528_69815145_69815272_69816099_69816223_69817943_69818027_69830200_69830275_69833922_69834057_69835184_69835328_69838339_69838430_69840437_69840820_69851395_69851481_69859658
30995	chr4	+	2898	4	FSM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	-18	4	-18	-4	multi-exon	FALSE	canonical	3	40	junction_1	9.42809041582063	114	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACCACTGGTGGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	115685270	115693378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_115685439_115688419_115688887_115690829_115691033_115691318
30996	chr6	-	3691	1	NIC	ENSMUSG00000032641.19	novel	1643	4	NA	NA	14921	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	134849810	134846119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134846100_134849800
30997	chr13	-	972	1	FSM	ENSMUSG00000114551.2	ENSMUST00000225901.2	1217	1	309	-64	309	64	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAAGATGAGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	115665999	115665027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_115665000_115666000
30998	chr8	+	3525	6	NIC	ENSMUSG00000055681.15	novel	2753	8	NA	NA	38	-7	intron_retention	FALSE	canonical	3	1345	junction_2	22.0308874083637	34	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTATCGCTCTGCCTGATA	490	False	NA	NA	False	NA	NA	NA	70755205	70765633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70759302_70760599_70761227_70762985_70763142_70764277_70764347_70765355
30999	chr19	+	3198	3	FSM	ENSMUSG00000044026.4	ENSMUST00000054098.4	3474	3	271	5	210	-5	multi-exon	FALSE	canonical	3	381	junction_1	3	285	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAGAAAGTGTCTCACGA	NA	False	NA	NA	False	NA	NA	NA	38384698	38394053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_38384750_38388881_38389063_38391087
31003	chr8	-	2862	5	FSM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	58	-8	-10	8	multi-exon	FALSE	canonical	3	323	junction_4	121.207208944023	254	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGCATCTTATTTATA	4152	False	NA	NA	False	NA	NA	NA	124747689	124723048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747599
31004	chr7	-	2356	18	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	-15	1	intron_retention	FALSE	canonical	3	112	junction_12	35.9706724062312	592	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCACTGCCCAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	30364400	30353139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
31005	chr13	-	1431	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.944400230224	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311460_34311615_34312270_34312391_34312515_34312854_34312966_34313228_34313338_34314159
31006	chrX	-	1842	10	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-14	-77	intron_retention	FALSE	non_canonical	0	0	junction_3	639.458065305264	6	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCTACTCCAACGCCTT	NA	False	NA	NA	False	NA	NA	NA	72974376	72965821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72970303_72971508_72971595_72971884_72971967_72972721_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
31007	chrX	+	1332	9	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	-23	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1589.82294611696	26	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTTTTCCTGTCATACT	NA	False	NA	NA	False	NA	NA	NA	105230745	105247302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105247017
31008	chr9	+	4211	5	NIC	ENSMUSG00000010051.16	novel	3014	4	NA	NA	-10	2336	intron_retention	FALSE	canonical	3	8	junction_4	12.3970762682174	124	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCTGTGACAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	107454146	107461245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298_107458135_107460015
31009	chr5	+	1809	14	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	37	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1085.85550489685	4	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650752	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654306_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668550_45669222_45669495_45669877
31010	chr17	-	1975	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	8	5	8	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTTTG	NA	False	NA	NA	False	NA	NA	NA	90217869	90215894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_90215900_90217900
31011	chr16	+	4050	17	NNC	ENSMUSG00000039456.11	novel	4178	17	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	218.714139917839	1	206	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATAAAGGTAACTGAAAGT	1093	False	NA	NA	False	NA	NA	NA	93629127	93672958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649987_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663431_93667251_93668141_93670124_93670283_93671646
31012	chr4	+	2473	14	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	-20	-374	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	662.85575465503	1	116	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTCTGCACGGAGTCTC	835	False	NA	NA	False	NA	NA	NA	129083674	129113026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090765_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129111100_129111166_129112223
31013	chr5	-	2209	4	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	-190	-12826	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	67.6214955961983	162	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTTGGTCTTGGTATT	NA	False	NA	NA	False	NA	NA	NA	109944354	109930098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109931814_109932961_109933023_109933207_109933335_109944048
31014	chr11	-	1190	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6152.71604740541	10	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113075	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102797_33104018_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
31015	chr8	-	2650	6	NNC	ENSMUSG00000031954.7	novel	1178	7	NA	NA	-69	-56261	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	769.023432672893	6	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGATTTTTCTTACAGG	NA	False	NA	NA	False	NA	NA	NA	112580992	112551383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112553243_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
31016	chr4	+	2104	18	NNC	ENSMUSG00000028330.9	novel	3010	23	NA	NA	134	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	93.6075145594995	16	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTCTGGGAGTCATGGT	-7	True	NA	NA	False	NA	NA	NA	46138746	46172399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46138887_46144784_46144817_46153062_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
31017	chr8	-	5312	6	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	3	0	intron_retention	FALSE	canonical	3	27	junction_3	204.957166256757	40	106	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	NA	False	NA	NA	NA	11685751	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
31020	chr7	-	3646	17	NNC	ENSMUSG00000001248.16	novel	3722	18	NA	NA	-4	-16	intron_retention	FALSE	canonical	0	0	junction_15	75.5900745799341	1	83	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGTTGGAAATGGCTATG	5811	False	NA	NA	False	NA	NA	NA	30850382	30829567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30850320
31021	chr3	-	1232	6	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-1	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1102.46244380478	1	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCCCCAGACTTGAACCT	NA	False	NA	NA	False	NA	NA	NA	108352526	108333905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336765_108352312
31022	chr8	-	4248	18	FSM	ENSMUSG00000061313.11	ENSMUST00000033975.9	4246	18	-14	12	-11	-12	multi-exon	FALSE	canonical	3	20	junction_17	11.1150012413475	85	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCCTACATTCATGTG	NA	False	NA	NA	False	NA	NA	NA	26244322	26215384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26225771_26225928_26226033_26226118_26228238_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244212
31023	chr11	+	3857	3	ISM	ENSMUSG00000046311.14	ENSMUST00000136539.2	2992	4	8376	-1022	7	-24	3prime_fragment	FALSE	canonical	3	110	junction_2	5	1	98	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGTGACTTGTTTTAG	4732	False	NA	NA	False	NA	NA	NA	49103521	49109612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_49103604_49104416_49104470_49105890
31024	chr10	-	2488	22	NNC	ENSMUSG00000052798.14	novel	3114	28	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	256.064068655163	17	22	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	NA	False	NA	NA	NA	117628574	117586525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613723_117625915_117625966_117626371_117626464_117628508
31025	chr19	+	1148	7	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	2328	303	1153	-303	3prime_fragment	FALSE	canonical	3	8704	junction_1	393.118903415013	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGAACTTTTTCCTGTCCT	3171	False	NA	NA	False	NA	NA	NA	8946732	8955540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
31027	chr9	-	2220	12	Fusion	ENSMUSG00000031938.16_ENSMUSG00000046111.19	novel	4144	13	NA	NA	979	-3585	intron_retention	FALSE	non_canonical	0	0	junction_1	0	67	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGCGTGAGTACACGTTGG	NA	False	NA	-64	True	NA	NA	NA	15228274	15217514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_15217578_15218166_15218287_15219023_15219116_15219818_15220210_15221152_15221331_15221651_15221706_15222822_15222983_15224062_15224133_15225285_15225327_15225524_15226427_15226677_15226734_15228181
31028	chrX	+	2891	9	FSM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	63	-1	-57	1	multi-exon	TRUE	canonical	3	98	junction_5	7.72981241687015	157	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTTGTTTTCTTTTACT	NA	False	NA	NA	False	NA	NA	NA	163763650	163780266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
31029	chr5	-	2274	9	FSM	ENSMUSG00000039753.17	ENSMUST00000087465.11	4237	9	-28	1991	1	-11	multi-exon	FALSE	canonical	3	499	junction_1	35.8704265377483	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCAACCATGTCTGTTG	8829	False	NA	NA	False	NA	NA	NA	43939491	43915237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
31030	chr11	-	4316	12	NIC	ENSMUSG00000001036.18	novel	4317	11	NA	NA	-3	-11	combination_of_known_splicesites	FALSE	canonical	3	21	junction_11	143.585146219503	1	218	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATCATGATGTGGGTT	NA	False	NA	NA	False	NA	NA	NA	61470491	61408086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61438833_61438869_61444335_61444406_61470392
31032	chr19	-	1678	9	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-16	0	intron_retention	FALSE	canonical	3	1250	junction_5	96.4737658640938	4064	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTCTGGAACTTTGC	6508	False	NA	NA	False	NA	NA	NA	4062724	4057501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
31034	chr1	+	2736	8	NIC	ENSMUSG00000026634.17	novel	3714	9	NA	NA	-149	-471	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	62.1285697861577	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATTTTTACTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	190660869	190678688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_190660956_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
31035	chr9	-	2125	12	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	27	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.1088824216403	5	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTTTGCTTAACAGCCA	NA	False	NA	NA	False	NA	NA	NA	13738376	13719106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719710_13720063_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
31039	chr15	-	2317	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	99	2001	99	1600	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	2	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTATTAAAGAAGATGTTAA	254	False	NA	NA	False	NA	NA	NA	37007547	36999271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
31041	chr1	+	1568	1	NIC	ENSMUSG00000103421.2	novel	1865	5	NA	NA	10944	-625	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGCCTCAATTGTCCTG	2476	False	NA	NA	False	NA	NA	NA	133248571	133250139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_133248600_133250100
31042	chrX	-	1944	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	-90	0	-90	0	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	141	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	78715131	78666836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
31043	chr1	+	3951	19	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	3055	-35	intron_retention	FALSE	non_canonical	0	0	junction_4	157.371072058964	1	176	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATAAAGAGCCATTATTT	3377	False	NA	NA	False	NA	NA	NA	72349640	72434076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72349708_72351566_72351751_72353312_72353362_72354617_72354729_72358149_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72422614_72422860_72422929_72433054_72433127_72433866
31044	chr3	-	4944	35	FSM	ENSMUSG00000033767.15	ENSMUST00000191758.6	5555	35	56	555	9	0	multi-exon	FALSE	canonical	3	49	junction_6	12.592082974362	69	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTTTGTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	83947426	83805516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
31046	chr11	+	3237	6	NIC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	-1	1	intron_retention	FALSE	canonical	3	682	junction_1	173.614976312529	1	100	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	1423	False	NA	NA	False	NA	NA	NA	120675129	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120677676_120677834_120677896_120678205_120678292_120678522_120679208_120679287
31047	chr6	-	470	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	4	43	4	-36	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	46	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTTTTATGTTTAAATA	NA	False	NA	NA	False	NA	NA	NA	115785704	115782508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
31048	chr3	+	1014	6	Antisense	novelGene_ENSMUSG00000000563.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAATACACAAGACGGAG	NA	False	NA	NA	False	NA	NA	NA	105850019	105866215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_105850382_105851004_105851183_105858906_105859035_105861335_105861497_105863210_105863357_105866176
31049	chr6	+	2188	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	325	2	46	-2	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	1	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2989	False	NA	NA	False	NA	NA	NA	122286003	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
31051	chr18	+	1601	9	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	-3	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	375.751164336187	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTACCTGGCTAGATTTT	NA	False	NA	NA	False	NA	NA	NA	68433459	68454924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442474_68447093_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
31052	chr11	-	3407	26	NNC	ENSMUSG00000002812.5	novel	4060	30	NA	NA	21	-1319	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.5799429338431	2	99	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGACAGAGGTGGGGGCAG	NA	False	NA	NA	False	NA	NA	NA	60618028	60606287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60606409_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
31053	chr7	-	1616	13	NNC	ENSMUSG00000102252.6	novel	2076	11	NA	NA	846	-612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	952.629066787744	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59654013	59632861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59652682_59652811_59652987_59653068_59653517_59653639_59653963
31055	chr1	+	4754	7	ISM	ENSMUSG00000041040.13	ENSMUST00000036540.12	5532	8	36076	2	-21598	-2	3prime_fragment	FALSE	canonical	3	105	junction_5	7.03957069398096	81	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTTTCTTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	59988240	60024503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_59988364_59992093_59992184_59997480_59997595_60008112_60008257_60009644_60009871_60014041_60014163_60020567
31056	chr9	+	3787	21	Intergenic	novelGene_1024	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCAACCGGAGCTGACAT	NA	False	NA	NA	False	NA	NA	NA	44836769	44876855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_44837279_44840964_44841118_44843639_44843787_44844594_44844777_44846624_44846800_44848930_44849047_44849148_44849254_44851265_44851447_44852451_44852585_44853863_44854167_44856100_44856222_44857479_44857818_44859325_44859514_44860077_44860283_44861030_44861191_44862078_44862231_44863286_44863403_44864240_44864414_44871276_44871438_44874634_44874727_44876778
31057	chr7	-	3552	11	NIC	ENSMUSG00000006763.15	novel	4728	12	NA	NA	0	-23	intron_retention	FALSE	canonical	3	340	junction_5	41.0604432513825	8	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTTTTCTATGGTTC	NA	False	NA	NA	False	NA	NA	NA	46360085	46338750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
31059	chr18	-	1598	7	NNC	ENSMUSG00000024587.11	novel	1492	13	NA	NA	16	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2457.4272737063	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAAAACACTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	64638105	64632729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633604_64633662_64633721_64634373_64634506_64634814_64634924_64636578_64636693_64637408_64637529_64637914
31063	chr3	-	620	2	ISM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	68	9	-3	-4	intron_retention	FALSE	canonical	3	427	junction_1	0	1164	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTAATAAGACTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	123301985	123301209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_123301310_123301465
31064	chr4	+	2312	18	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	33	-386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	149.431263202	9	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTAAGTAGAGACTATTT	-11	True	NA	NA	False	NA	NA	NA	44300908	44364289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709_44364101_44364237
31065	chrX	-	4032	10	ISM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	16539	13	-565	-8	3prime_fragment	FALSE	canonical	3	318	junction_8	69.6052360737961	1	154	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAATAACCATCTGGTA	NA	False	NA	NA	False	NA	NA	NA	72993424	72986410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803
31066	chr9	+	3445	21	NNC	ENSMUSG00000032212.11	novel	3755	21	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	70.4623835815962	2	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTATAGTTGCTAATGT	NA	False	NA	NA	False	NA	NA	NA	70450162	70499507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480966_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
31067	chr16	+	3816	6	NNC	ENSMUSG00000022770.18	novel	3418	23	NA	NA	1171	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	139.147978785177	200	96	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAATCCATATGTTAAAT	9453	False	NA	NA	False	NA	NA	NA	31673639	31692158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690489
31068	chr4	+	2642	20	NNC	ENSMUSG00000028576.13	novel	549	4	NA	NA	-11224	1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	42.3082606551911	5	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCCTTTTCCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	94491503	94581467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_94492167_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
31069	chrX	-	2645	17	NNC	ENSMUSG00000031174.18	novel	2739	17	NA	NA	36	-3	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	32.1859829739593	9	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATATGTGCTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	10082936	10024457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_10025089_10028840_10028930_10030984_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
31070	chr7	-	4747	11	NNC	ENSMUSG00000025507.14	novel	2927	14	NA	NA	58	-33	intron_retention	FALSE	non_canonical	0	0	junction_5	19.8969846961795	5	135	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CATACAAATAAAATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	141023847	141018070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019825_141019909_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021443_141021524
31071	chr17	+	2542	2	FSM	ENSMUSG00000050088.10	ENSMUST00000164837.3	2523	2	-16	-3	-16	1	multi-exon	FALSE	canonical	3	15	junction_1	0	298	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGTGCTGTTACTTTAG	NA	False	NA	NA	False	NA	NA	NA	15163475	15166199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_15163582_15163763
31073	chr5	+	3051	14	NNC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	-1	-10	intron_retention	FALSE	non_canonical	0	0	junction_13	68.4595505329359	2	72	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCAAAGAGGCCGAGGC	NA	False	NA	NA	False	NA	NA	NA	24599392	24614933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24599582_24604910_24605679_24605754_24605798_24605972_24606079_24606760_24606923_24607042_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613818_24614351
31075	chr8	+	2487	3	ISM	ENSMUSG00000031628.10	ENSMUST00000211115.2	2601	7	17664	3	17513	-3	3prime_fragment	FALSE	canonical	3	230	junction_2	20	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGTGTATTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	47087989	47092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_47088588_47089236_47089358_47090953
31076	chr8	+	1992	6	NIC	ENSMUSG00000031562.17	novel	1126	5	NA	NA	100	-17	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	132.43775896624	475	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCATCCAGCACCAAG	NA	False	NA	NA	False	NA	NA	NA	48563345	48594681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
31077	chr7	+	3659	7	NNC	ENSMUSG00000037640.16	novel	811	6	NA	NA	8	1228	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	71.1407056473296	23	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCTGGCTCCATTTTC	NA	False	NA	NA	False	NA	NA	NA	27430843	27451114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592_27449199_27449310_27449608_27449689
31078	chr13	-	4989	17	ISM	ENSMUSG00000049658.14	ENSMUST00000038104.12	9921	39	52693	2	-4550	0	3prime_fragment	FALSE	canonical	3	31	junction_3	9.82900681656087	58	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTTTGTCCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	100187885	100154503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_100156919_100160107_100160364_100161904_100162164_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233_100183348_100186143_100186538_100187452_100187638_100187855
31079	chrX	+	2654	9	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	-36	-22	intron_retention	FALSE	canonical	3	8	junction_1	91.6630207608281	166	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATTTGTGTTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	73325481	73333732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73325647_73326323_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332626_73332710_73332789_73332904
31080	chrX	+	2522	9	NIC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	7	-6	intron_retention	FALSE	canonical	3	663	junction_3	81.967981553775	79	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCATTATAAGAACCTGC	206	False	NA	NA	False	NA	NA	NA	73356645	73363749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73362705_73362796_73362868_73362997_73363109_73363565
31081	chr11	-	1535	8	ISM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	14029	0	14029	0	3prime_fragment	FALSE	canonical	3	2404	junction_3	160.445553101992	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	9221	False	NA	NA	False	NA	NA	NA	88832262	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109
31082	chr14	+	1652	8	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1272	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2657.89784972859	1	71	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359964	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373128_63375799_63375944_63376447_63376565_63379182_63379312_63379680
31083	chr7	-	2821	15	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	3085	-1311	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	123	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACGCGCGGGACGGAGAA	NA	False	NA	NA	False	NA	NA	NA	79965866	79944287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79944339_79950049_79950180_79950782_79950910_79954109_79954339_79954424_79954591_79955663_79955815_79956121_79956268_79957302_79957442_79959138_79959232_79960485_79960634_79960815_79960935_79961970_79962074_79962777_79962956_79963273_79963314_79964865
31084	chr7	-	3904	22	NIC	ENSMUSG00000063550.9	novel	4052	23	NA	NA	34	1	combination_of_known_splicesites	FALSE	canonical	3	19	junction_12	47.2779209997538	1	98	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACATCTCAGGAAAATCCA	10013	False	NA	NA	False	NA	NA	NA	101859040	101783408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101858945
31085	chr3	-	2306	16	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-23	-12	intron_retention	FALSE	canonical	1	37	junction_8	155.888507166714	9	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTGAAGCCAAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	95662218	95647299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
31086	chr10	+	1781	8	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	87	-17	intron_retention	FALSE	canonical	0	0	junction_7	2394.46785021522	78	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGTATGGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	126899571	126903149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902456_126902534_126902797
31087	chr3	+	1616	3	FSM	ENSMUSG00000056260.16	ENSMUST00000098751.10	929	3	-32	-655	-32	-15	multi-exon	FALSE	canonical	3	7	junction_1	16.5	92	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTTTCAATGTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	106592270	106643875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_106592450_106641673_106641956_106642720
31088	chr2	+	1565	5	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	229	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	668.283435377535	2	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143757468	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046_143784292_143784408
31089	chr3	-	2505	9	NIC	ENSMUSG00000068798.11	novel	1377	8	NA	NA	1	-16	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	193.548443548379	997	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACTTAGCTACTTAACA	NA	False	NA	NA	False	NA	NA	NA	105708651	105634598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_105636281_105639271_105639388_105642380_105642496_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
31091	chr11	-	900	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	45	398	45	-21	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	60	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGCAGCCCTGATGGGGGA	9986	False	NA	NA	False	NA	NA	NA	69812167	69807943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
31092	chr7	-	2415	10	NIC	ENSMUSG00000001794.14	novel	1429	11	NA	NA	-15	-6	intron_retention	FALSE	canonical	3	766	junction_9	267.734297991474	222	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCTATAGAGTAACTTGG	NA	False	NA	NA	False	NA	NA	NA	29894488	29886373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29893527_29894430
31093	chr14	+	2419	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73732	354	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_5	48.8128454154336	101	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAACACAGACATGTAT	NA	False	NA	NA	False	NA	NA	NA	43169938	43251835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_43170061_43170454_43170526_43173084_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
31094	chr11	-	1462	7	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	40	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCTATGGGCAGGAAAGG	NA	False	NA	92	True	NA	NA	NA	72342370	72339561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72339787_72339865_72340001_72340086_72340155_72340545_72340658_72340816_72340919_72341449_72341600_72341700
31095	chr5	-	2387	15	NIC	ENSMUSG00000041740.17	novel	3112	17	NA	NA	71	0	intron_retention	FALSE	canonical	3	1263	junction_13	137.759550948568	616	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCTTCCCGACAAGCAT	NA	False	NA	NA	False	NA	NA	NA	115398214	115379828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389521_115393408_115393500_115395032_115395233_115398177
31096	chr1	-	2002	16	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	503.901030847218	5	52	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	128345035	128291443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297267_128299982_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
31097	chr2	+	2779	14	NNC	ENSMUSG00000027655.15	novel	3284	22	NA	NA	-1102	-8	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_11	35.8844298783234	1	60	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGGACATGTTTCTCCT	138	False	NA	NA	False	NA	NA	NA	158668235	158700126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_158668557_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691382_158691474_158693630_158693743_158698999
31099	chrX	+	1388	9	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	-31	1	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	764.555824891159	55	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52076982	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101239_52105223_52105307_52108981_52109029_52109199_52109277_52109943
31100	chr3	-	2017	12	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-18	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	282.594912016336	2287	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTAACCTTAACTTATTT	NA	False	NA	NA	False	NA	NA	NA	153650287	153628010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644581_153644714_153644805_153647519_153647608_153650032
31102	chr13	-	3818	13	ISM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	17	116324	0	2151	5prime_fragment	FALSE	canonical	3	156	junction_1	16.5797734872612	22	89	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGGTCCCCCATACCCA	NA	False	NA	NA	False	NA	NA	NA	30039640	29625607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
31103	chr15	+	4410	4	ISM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	17	4	17	2	intron_retention	FALSE	canonical	3	69	junction_1	14.8174071805952	104	144	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTGTAGCCTGTACTT	NA	False	NA	NA	False	NA	NA	NA	76763475	76776591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430
31104	chr7	-	2670	2	ISM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	2081	3	2047	-3	3prime_fragment	FALSE	canonical	3	902	junction_1	0	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGGCATTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	119317940	119314318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_119316293_119317244
31105	chr8	+	1985	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	-13	-1	-13	0	multi-exon	FALSE	canonical	3	111	junction_1	0	468	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTATTTCCTTATG	NA	False	NA	NA	False	NA	NA	NA	11608415	11613251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_11608567_11611417
31106	chr10	+	2530	8	NIC	ENSMUSG00000035351.17	novel	1267	10	NA	NA	13	1	intron_retention	FALSE	canonical	3	484	junction_1	39.1689172895123	4	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAAAAATATGTTCCTAT	NA	False	NA	NA	False	NA	NA	NA	87982866	88014246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010796_88012934
31107	chrX	+	2277	14	NNC	ENSMUSG00000025287.16	novel	1752	15	NA	NA	-10	2	intron_retention	FALSE	canonical	0	0	junction_12	283.001348607404	16	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	NA	False	NA	NA	NA	154045490	154080644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078780_154079366_154079409_154079576
31108	chr1	-	1727	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	-36	7	5	-7	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	3324	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCAGAGCCCTGACTGG	NA	False	NA	NA	False	NA	NA	NA	10108388	10094832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
31109	chr5	+	1510	7	NIC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	2261.9683169016	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_104583063_104584137_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
31110	chr7	-	3170	8	NNC	ENSMUSG00000030722.8	novel	3388	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_7	86.2826394910994	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGGTTTCTGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	125995909	125982024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995746
31111	chr16	+	2313	2	Antisense	novelGene_ENSMUSG00000064994.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1102	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACCACCGGATGTCCCGC	NA	False	NA	NA	False	NA	NA	NA	55853643	55858164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_55855657_55857864
31112	chr19	-	1907	6	NNC	ENSMUSG00000025024.8	novel	1948	6	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	92.6533323739627	571	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGTGTGTTAACAAAGGG	NA	False	NA	NA	False	NA	NA	NA	53379005	53367824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53372989_53377733_53377854_53378846
31113	chr11	-	2680	10	FSM	ENSMUSG00000001891.17	ENSMUST00000102875.11	2683	10	-1	4	-1	-4	multi-exon	FALSE	canonical	3	61	junction_9	120.111779214916	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTGCCTTTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	21320478	21271141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21320186
31115	chr11	+	1721	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	165	18	72	-18	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAGACCATGCAAGGATC	NA	False	NA	NA	False	NA	NA	NA	107370474	107388981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
31116	chr12	-	2411	9	NNC	ENSMUSG00000020986.14	novel	4109	20	NA	NA	6	-412	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218.526564460708	12	48	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTTTCTTAGTTATTTT	2684	False	NA	NA	False	NA	NA	NA	59058797	59005580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006820_59038916_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
31117	chrX	-	2549	1	Genic_Genomic	ENSMUSG00000067561.13	novel	NA	NA	NA	NA	-19	-1768	mono-exon	FALSE	NA	NA	NA	NA	NA	4	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGGAGAACCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	101898241	101895692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_101895700_101898200
31118	chrX	-	891	2	ISM	ENSMUSG00000067561.13	ENSMUST00000087896.11	1255	8	2668	-4	2668	4	intron_retention	FALSE	canonical	3	203	junction_1	0	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCAGGTCTTCACTGT	NA	False	NA	NA	False	NA	NA	NA	101894294	101891240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_101891758_101893920
31119	chr18	-	3702	8	NNC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	15	-2	intron_retention	TRUE	canonical	1	1	junction_4	73.2471354876275	107	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATATGTTGTTACGTCT	NA	False	NA	NA	False	NA	NA	NA	70605536	70585285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597360_70600401_70601589_70602519_70602849_70604743_70605051_70605361
31120	chr1	+	2799	9	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-2	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	38.1966539764938	4	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTCAGAAAGTTAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	173246759	173293585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173247122_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
31121	chr11	+	1826	5	Antisense	novelGene_ENSMUSG00000098955.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGCGATCTGCGCAGGA	7	True	NA	NA	False	NA	NA	NA	120236515	120238913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120237362_120237464_120237649_120237740_120238178_120238463_120238702_120238792
31122	chr14	+	2673	16	NIC	ENSMUSG00000022214.16	novel	2593	15	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	48.97981443638	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	55797490	55807521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55797579_55797897_55798085_55798666_55798877_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
31123	chr3	+	1960	8	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1799.22883707528	2	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	121220182	121251848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730_121250862_121250905
31124	chr13	-	1012	5	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4080	3037	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	21	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGACGTGGCTAGGCGC	9708	False	NA	-112	True	NA	NA	NA	55473085	55469943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55470093_55470663_55470891_55472142_55472250_55472332_55472417_55472640
31125	chr5	-	1922	13	NIC	ENSMUSG00000001082.13	novel	1906	13	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_12	108.08185555402	1285	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794511	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794170_34794270
31127	chr16	-	596	1	Genic_Genomic	ENSMUSG00000033809.16	novel	NA	NA	NA	NA	-468	-6089	mono-exon	FALSE	NA	NA	NA	NA	NA	47	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGGGCGGGACTAAGGA	NA	False	NA	NA	False	NA	NA	NA	20430953	20430357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_20430400_20431000
31128	chr19	+	2089	10	Fusion	ENSMUSG00000118038.2_ENSMUSG00000024785.8	novel	618	2	NA	NA	-53	-12	multi-exon	TRUE	canonical	0	0	junction_1	163.391826260951	6	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGATGTAACAGAATCT	NA	False	NA	NA	False	NA	NA	NA	29044693	29121317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_29044983_29059111_29059301_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
31129	chr5	-	1569	2	ISM	ENSMUSG00000005378.18	ENSMUST00000129691.8	833	5	2272	6	2072	-4	3prime_fragment	FALSE	canonical	3	1046	junction_1	0	15	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAACTGGTGTCCCTGGC	NA	False	NA	NA	False	NA	NA	NA	135083509	135081816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_135082279_135082402
31131	chrX	+	3624	5	NIC	ENSMUSG00000031107.7	novel	1747	6	NA	NA	88	0	intron_retention	FALSE	canonical	3	254	junction_1	56.5707521604583	4	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCATTTGGTCCACTCA	NA	False	NA	NA	False	NA	NA	NA	47783968	47799600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_47783998_47784196_47786330_47795181_47795312_47797766_47797951_47798452
31132	chr8	-	2372	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	293.228390318688	23	86	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCACTGTCTGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	96615032	96590765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591876_96593444_96593600_96596099_96596266_96597402_96597548_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602491_96604333_96604498_96614844
31133	chr5	+	4053	13	NIC	ENSMUSG00000029389.18	novel	2799	14	NA	NA	3	-737	intron_retention	FALSE	canonical	3	73	junction_4	12.209684225601	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTTTTCTAGGATGGT	NA	False	NA	NA	False	NA	NA	NA	124690934	124706986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_124691103_124692605_124692657_124692733_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
31134	chr7	-	3002	9	NNC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.832530137358	178	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTTTGGGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	55612209	55581040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_55581639_55581743_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55594706_55594834_55611199_55611321_55612143
31136	chrX	+	1771	10	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	4	39	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	965.038168502504	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543401	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556519_161560808_161560879_161561343
31137	chr6	-	4705	8	FSM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	103	2	103	-2	multi-exon	FALSE	canonical	3	46	junction_2	7.92824967172092	151	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTAGGAGCCTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	54543371	54482876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397_54511580_54525208_54525369_54543224
31138	chr9	+	3261	11	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	-70	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.3753260832581	115	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGGGCTTTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	75375827	75393958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_75375966_75377587_75377649_75379458_75379554_75380085_75380262_75380603_75380689_75383697_75383793_75385260_75385396_75386953_75387087_75388729_75388947_75390380_75390480_75391931
31139	chr7	-	3446	23	ISM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	9190	5	5075	-5	3prime_fragment	FALSE	canonical	3	56	junction_15	11.3023803533987	77	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGATTCTGGCTCACCTTT	NA	False	NA	NA	False	NA	NA	NA	81134483	81110151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173
31140	chr2	+	1575	5	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	182	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	668.283435377535	8	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143757421	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780369_143780522_143780613_143781871_143781949_143784046
31141	chr10	+	2426	16	NNC	ENSMUSG00000001785.14	novel	2572	15	NA	NA	-21	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	79.0573350311166	17	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAGTAATAGAATAAACT	NA	False	NA	NA	False	NA	NA	NA	85707726	85724924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893_85724344_85724421
31142	chr16	-	1955	5	NNC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	14	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	148.646182258409	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTGTGTTGTGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	10810971	10777350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10778443_10778496_10778916_10781120_10781278_10784288_10784514_10810909
31143	chr12	+	3263	23	FSM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	42	-5	42	0	multi-exon	FALSE	canonical	3	35	junction_9	13.5066558431803	124	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGCGGCCTTGTTA	NA	False	NA	NA	False	NA	NA	NA	78273468	78731546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077_78670198_78672907_78672967_78673880_78674035_78684231_78684354_78701580_78701669_78711264_78711339_78716597_78716663_78727064_78727169_78729491_78729589_78730551
31144	chr5	+	3625	21	ISM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	255	3170	-50	-1849	5prime_fragment	FALSE	canonical	3	55	junction_8	11.6275534829989	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAATTAGTCATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	3646320	3684062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715
31145	chr6	-	1445	11	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	3138.99985504938	7	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
31146	chr5	-	2277	10	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	72	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	256.948762726476	7	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAGTTTTCCAAACACGA	NA	False	NA	NA	False	NA	NA	NA	34093685	34055277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056838_34057820_34057869_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
31147	chr8	+	1860	14	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	448.592869013962	3	9	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	107621220	107649720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638985_107639979_107640024_107645251_107645438_107648803_107648915_107649496
31148	chr18	-	3475	13	NNC	ENSMUSG00000003778.15	novel	3005	21	NA	NA	14697	-3	intron_retention	FALSE	canonical	0	0	junction_6	243.180474248151	1	123	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAAACTCTGGCCTTTGG	8642	False	NA	NA	False	NA	NA	NA	34742909	34732885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737965_34738526_34738742_34738980_34739040_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470
31149	chr2	+	3040	5	FSM	ENSMUSG00000026848.15	ENSMUST00000028199.12	3039	5	-1	0	-1	0	multi-exon	FALSE	canonical	1	21	junction_2	34.4990941910074	179	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGAGCTTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	30842969	30849027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30843236_30843763_30844030_30845789_30845966_30846459_30846588_30846823
31150	chr17	+	1237	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1666.82531778228	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3055	False	NA	NA	False	NA	NA	NA	35816933	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817121_35817224_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
31152	chr11	-	2462	11	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	-92	30	intron_retention	FALSE	canonical	3	1008	junction_6	76.7323269554625	4	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGAGCCTGCTTGAAGTT	NA	False	NA	NA	False	NA	NA	NA	96807025	96798611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
31153	chr12	-	1851	12	NNC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	416.250540416099	2	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTATATGGTCAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	36206762	36141835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169117_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206617
31154	chr9	+	1858	9	NNC	ENSMUSG00000032336.18	novel	2024	8	NA	NA	-1	-1	intron_retention	FALSE	non_canonical	0	0	junction_5	126.778103393291	16	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTGGAATAATACTCTTT	15	False	NA	NA	False	NA	NA	NA	58489687	58560160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58550924_58550975_58551086_58557779_58557802_58558540_58558616_58559141
31156	chr11	+	4001	4	NNC	ENSMUSG00000017776.16	novel	4290	3	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.253047865789	291	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTTACTATGTTGAATGT	2143	False	NA	NA	False	NA	NA	NA	75570129	75597731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75570175_75570440_75570491_75583022_75583389_75594191
31157	chr9	+	2043	11	FSM	ENSMUSG00000010048.11	ENSMUST00000194932.6	2054	11	-5	16	-5	-16	multi-exon	FALSE	canonical	3	631	junction_10	36.8511872264653	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGATACTTAGCCCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	107464919	107470221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
31158	chr18	+	1996	10	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	-121	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	810.141338072759	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAAGTGAAATTTTTTT	722	False	NA	NA	False	NA	NA	NA	61688638	61721374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689608_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
31159	chr17	+	1233	4	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	16	intron_retention	FALSE	canonical	3	3280	junction_1	3216.4054816242	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	6237	False	NA	NA	False	NA	NA	NA	24939083	24940857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24939107_24939246_24939427_24939507_24940277_24940596
31160	chr16	+	4812	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	65	13	2	-9	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	1	245	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATAATACTGACTTGTCG	8022	False	NA	NA	False	NA	NA	NA	32427802	32451599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
31161	chr2	-	2924	9	ISM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	101	15436	-26	5642	5prime_fragment	FALSE	canonical	3	123	junction_2	14.9577530063843	3	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCGTTTCTCTTGAGT	NA	False	NA	NA	False	NA	NA	NA	23045935	23021053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
31162	chr1	+	4129	6	FSM	ENSMUSG00000051285.18	ENSMUST00000061280.17	5232	6	217	886	-29	83	multi-exon	FALSE	canonical	3	103	junction_2	17.1650808329003	160	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCCAGTGGCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	7159360	7242966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_7159441_7190417_7190840_7217860_7217964_7231115_7231288_7233471_7233596_7239738
31166	chr16	-	2837	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	35	34	1	-34	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	12	103	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAAAGCTGAAATTAAAG	NA	False	NA	NA	False	NA	NA	NA	13485999	13355857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
31168	chr11	+	2349	6	NIC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	-1109	0	intron_retention	FALSE	canonical	3	1941	junction_1	109.714903272071	1	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69478411	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69479374_69479451_69479565_69479966_69480536_69480614_69480689_69481481_69481589_69482175
31169	chr2	-	1774	10	NIC	ENSMUSG00000027195.11	novel	1902	11	NA	NA	-2	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	231.040694400653	57	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTGAAATGAAAGTGTAT	NA	False	NA	NA	False	NA	NA	NA	93988240	93863047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
31170	chr6	+	2361	8	NIC	ENSMUSG00000013736.17	novel	1398	9	NA	NA	-6	-7	intron_retention	FALSE	canonical	3	228	junction_1	241.002328721072	1139	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCATTCTTTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	106746120	106759428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756429_106758607
31172	chr4	-	2648	2	NNC	ENSMUSG00000078713.9	novel	442	2	NA	NA	-1	1	intron_retention	FALSE	canonical	0	0	junction_1	0	27	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGTGGTTTTGTGTTTTT	-11	True	NA	NA	False	NA	NA	NA	45108109	45105210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_45105854_45106104
31173	chr13	+	2054	10	NNC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	399.777561608242	859	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGACCAGTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85337578	85361840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359411_85359475_85359972_85360034_85360858
31174	chr16	+	1826	15	NNC	ENSMUSG00000022945.13	novel	1922	14	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	242.827319597399	56	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGAAAAAGTGTGTGTGC	4394	False	NA	NA	False	NA	NA	NA	93680816	93702993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93697859_93697916_93698245_93701893_93701986_93702792
31177	chr2	+	2149	8	NNC	ENSMUSG00000026798.11	novel	3026	7	NA	NA	-11378	-2978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	28	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGCTGCGTGGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	29666126	29677672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29666214_29666371_29667384_29667435_29667971_29669836_29669908_29672131_29672216_29674968_29675040_29676487_29676621_29677516
31178	chr12	-	1043	1	Intergenic	novelGene_4344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAATAAAAGAAACATAGGAT	NA	False	NA	NA	False	NA	NA	NA	31380705	31379662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_31379700_31380700
31179	chr4	-	1677	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	729.869946558213	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	11	False	NA	NA	False	NA	NA	NA	41098171	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41093834_41093909_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
31180	chr12	+	3758	10	ISM	ENSMUSG00000021258.11	ENSMUST00000221167.2	2789	12	241	4418	82	-3207	5prime_fragment	FALSE	canonical	3	57	junction_9	9.69535971483266	29	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTCTCCTCTCACTGAT	NA	False	NA	NA	False	NA	NA	NA	108146078	108165198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_108146140_108148435_108148468_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597
31181	chr17	-	1618	6	NIC	ENSMUSG00000036820.13	novel	1530	10	NA	NA	-1035	2	intron_retention	FALSE	canonical	3	307	junction_3	20.6552656724623	14	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGTCTGCGTCATG	NA	False	NA	NA	False	NA	NA	NA	24378044	24374811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24377037_24377117_24377207_24377283_24377497_24377613
31182	chr7	+	2182	7	NIC	ENSMUSG00000030990.19	novel	2141	7	NA	NA	-5	-3	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	59.4065559419909	95	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	101859536	101887771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
31183	chr3	+	2631	14	NIC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	146	junction_2	190.962278254048	1	88	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTATAGTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	157742336	157772725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
31185	chr9	+	1927	9	NNC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	-393	-1	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_1	545.756584935079	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTCTGATTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	65537447	65567807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65537536_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
31186	chr12	+	515	1	Intergenic	novelGene_4400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTTATGACACTGAAAAAT	2380	False	NA	NA	False	NA	NA	NA	69171227	69171742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_69171200_69171700
31187	chr11	+	3081	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	-44	0	-44	0	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	881	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTCCATGTTATATT	NA	False	NA	NA	False	NA	NA	NA	87000015	87015461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
31189	SIRV7	-	2238	6	FSM	SIRV7A	SIRV702	2247	6	4	5	4	0	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	114912	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
31190	chr19	-	2074	5	FSM	ENSMUSG00000024668.9	ENSMUST00000235853.2	2025	5	-53	4	-27	-4	multi-exon	FALSE	canonical	2	8	junction_4	101.25802437338	97	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATATATTATTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	10502573	10479008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498423_10502422
31191	chrX	+	1194	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	103	-87	103	87	mono-exon	FALSE	NA	NA	NA	NA	NA	14	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACACTTGAACACAACTCT	NA	False	NA	NA	False	NA	NA	NA	13068912	13070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068900_13070100
31192	chr1	-	1636	9	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	0	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3313.55729352912	66	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCCTAGAGGTTACATT	NA	False	NA	NA	False	NA	NA	NA	86287086	86278204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278531_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86280950_86284729_86285175_86285828_86285946_86286927
31193	chr14	+	1286	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	149	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6575	False	NA	NA	False	NA	NA	NA	76741953	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744168_76744605
31196	chr7	-	2465	2	FSM	ENSMUSG00000035596.15	ENSMUST00000133223.2	795	2	-686	-984	-686	-2	multi-exon	FALSE	canonical	3	229	junction_1	0	121	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTTGTGAGTATAAC	5353	False	NA	NA	False	NA	NA	NA	3688213	3680789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_3681849_3686807
31197	chr11	-	2477	19	Antisense	novelGene_ENSMUSG00000098942.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.458122847290851	7	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAGGAGAGGACGTGGGG	NA	False	NA	NA	False	NA	NA	NA	46031009	45959858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_45960085_45984693_45984767_45990677_45990755_46003581_46003777_46004449_46004514_46009244_46009317_46012244_46012414_46013919_46014003_46015832_46015974_46018071_46018249_46019610_46019699_46022445_46022643_46025250_46025359_46027069_46027289_46028190_46028268_46028365_46028476_46029663_46029800_46030516_46030603_46030830
31198	chr5	+	2407	15	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	20	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	310.143909980446	6	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAAAAGTAGATTGTAAA	NA	False	NA	NA	False	NA	NA	NA	64250312	64285496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261208_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64270877_64271177_64273642_64273777_64285119
31200	chr19	-	2994	5	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1411	4	NA	NA	-14	-8	multi-exon	FALSE	canonical	3	35	junction_4	22.3760474615156	160	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAAGAGCTGCTTTGTCT	7800	False	NA	NA	False	NA	NA	NA	4861627	4834328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4861199
31201	chr1	+	3155	1	FSM	ENSMUSG00000045216.8	ENSMUST00000194670.2	3291	1	1599	-1463	1599	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	453	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTGTGCTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	36142369	36145524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_36142400_36145500
31202	chr1	-	2529	3	ISM	ENSMUSG00000090553.9	ENSMUST00000172079.2	653	4	48	500	48	-500	5prime_fragment	FALSE	canonical	3	3763	junction_2	152.5	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGAAATGTATACTTGAC	NA	False	NA	NA	False	NA	NA	NA	133537737	133532133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_133534318_133536634_133536698_133537455
31204	chr2	-	3045	20	NIC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_19	27.8455375458768	257	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	130539396	130526032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130539278
31205	chr18	+	3249	11	NNC	ENSMUSG00000024576.15	novel	1222	11	NA	NA	2	259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	894.292793217076	2	109	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAATGAGCCATGAAGAT	474	False	NA	NA	False	NA	NA	NA	61688390	61723391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702626_61708477_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496_61721216_61722257
31206	chr9	+	3149	3	NIC	ENSMUSG00000032434.10	novel	3383	4	NA	NA	56	-1	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	298.5	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTGTGCCTTCACAGT	NA	False	NA	NA	False	NA	NA	NA	114560296	114578411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_114560442_114569126_114569226_114575506
31207	chr7	+	3665	28	NNC	ENSMUSG00000013928.14	novel	1182	4	NA	NA	-38751	-1485	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	112	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGAAAGCCGGCGCCACC	NA	False	NA	NA	False	NA	NA	NA	29940767	29979835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29941312_29941439_29941489_29941567_29941696_29941815_29941938_29942170_29942303_29942467_29942567_29942855_29942959_29943256_29943383_29943894_29943972_29944723_29944935_29947043_29947094_29949203_29949337_29950099_29950226_29950816_29950881_29950957_29951068_29951738_29951818_29953404_29953529_29953609_29953682_29955232_29955358_29957482_29957594_29967241_29967374_29969579_29969755_29970101_29970250_29971038_29971202_29971752_29971809_29973371_29973434_29974524_29974606_29979572
31208	chr7	-	1428	9	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	6695.59761615795	7	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398281	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396444_126396721_126396815_126396949_126398216
31209	chr1	+	4348	30	NNC	ENSMUSG00000056763.17	novel	4355	30	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	36.8067227483895	4	124	14	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTACCAGTGTCGGTTTCT	NA	False	NA	-94	True	NA	NA	NA	10108449	10206991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197778_10200196_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
31210	chr3	+	3078	2	ISM	ENSMUSG00000047213.15	ENSMUST00000108346.5	4929	6	21315	697	21315	-697	3prime_fragment	FALSE	canonical	3	484	junction_1	0	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAAGCACCAACTTCTC	NA	False	NA	NA	False	NA	NA	NA	16258714	16270322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_16259589_16268118
31212	chr9	-	1357	10	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGGCTGCTCCCACAGGA	NA	False	NA	NA	False	NA	NA	NA	64085788	64080680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080708_64082096_64082276_64082473_64082581_64082863_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085002_64085085_64085174_64085300_64085504
31213	chr1	+	2903	6	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	-44	-7	intron_retention	FALSE	canonical	2	5	junction_1	80.6572997316424	2	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTCACTTTTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	165957864	165994071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165957941_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165992285_165992715
31214	chr6	+	1579	5	NNC	ENSMUSG00000067338.7	novel	1775	5	NA	NA	170	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	546.267791472278	1580	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACATTTGCTTCCCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	145561652	145567203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145561816_145563958_145564182_145564457_145564583_145564908_145565590_145566816
31215	chr11	-	2190	26	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	4	-266	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	129.187392573734	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGATCTAAGGAAGACGC	NA	False	NA	NA	False	NA	NA	NA	54924237	54870199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889359_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
31216	chr3	+	936	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1786.0104814922	2	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCGATGTGTTTGTCTTG	3587	False	NA	NA	False	NA	NA	NA	88486944	88495720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494182_88495206
31217	chr3	+	3520	1	Antisense	novelGene_ENSMUSG00000027702.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAATAATTCCA	NA	False	NA	NA	False	NA	NA	NA	30678880	30682400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_30678900_30682400
31218	chr19	-	3040	21	NNC	ENSMUSG00000024942.20	novel	3062	22	NA	NA	13	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	51.2800887284724	151	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACATCTGTCTCTGGGT	2610	False	NA	NA	False	NA	NA	NA	6065220	6038577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6047709_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
31219	chr15	-	1032	7	ISM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	52	1291	-17	120	5prime_fragment	FALSE	canonical	3	1820	junction_4	81.8930535651359	9	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAATTTCCTAAACAGCG	NA	False	NA	NA	False	NA	NA	NA	51728867	51651244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
31220	chr11	-	1636	9	NNC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	13	-455	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	470.902574185999	12	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCAGACTCTGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	21521921	21507241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21516162_21516619_21516719_21521729
31221	chr1	+	1779	8	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	1471	0	intron_retention	FALSE	canonical	3	243	junction_3	18.2163864334801	9	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	NA	False	NA	NA	NA	75415056	75419817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418676_75418828_75418922_75419087_75419257_75419544
31222	chr13	-	2087	6	NIC	ENSMUSG00000006715.12	novel	963	7	NA	NA	-10	-3	intron_retention	FALSE	canonical	3	1483	junction_5	88.2006802694855	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTCGTGGAGAATTAAG	NA	False	NA	NA	False	NA	NA	NA	24945916	24935830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
31223	chr7	+	3034	1	ISM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	26237	2	923	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	88	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGGGGTAATGAATTT	NA	False	NA	NA	False	NA	NA	NA	41274921	41277955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_41274900_41278000
31226	chr11	+	2274	13	Antisense	novelGene_ENSMUSG00000078789.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	313	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGAAACAAAAAGACAGC	5406	False	NA	NA	False	NA	NA	NA	75068521	75081300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75069213_75069749_75069856_75069996_75070139_75070550_75070628_75071383_75071488_75071613_75071764_75072111_75072185_75074024_75074152_75074296_75074457_75074997_75075118_75076612_75076675_75076788_75076943_75080992
31227	chr12	-	4695	25	NIC	ENSMUSG00000061533.17	novel	4807	26	NA	NA	25	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_21	14.1507263260779	1	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAATGATGCGTCTGTT	6177	False	NA	NA	False	NA	NA	NA	91351158	90965265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91333116_91333279_91336835_91336971_91348421_91348563_91351007
31229	chr13	+	3217	21	FSM	ENSMUSG00000021314.14	ENSMUST00000003345.10	3367	21	148	2	2	-2	multi-exon	FALSE	canonical	3	40	junction_16	8.61669890387264	302	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGTTCTTTTTCAAGAG	NA	False	NA	NA	False	NA	NA	NA	19132522	19335089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305490_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
31230	chr10	+	1910	5	Antisense	novelGene_ENSMUSG00000020078.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	28	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTCTTTCACTAAGTCTG	NA	False	NA	NA	False	NA	NA	NA	62291050	62304178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62292535_62294704_62294845_62299468_62299538_62300410_62300515_62304065
31231	chr17	-	2355	12	NNC	ENSMUSG00000079553.12	novel	2260	12	NA	NA	-14965	2	intron_retention	FALSE	canonical	0	0	junction_11	218.042948229763	14	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	4806	False	NA	NA	False	NA	NA	NA	34124600	34094639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34111589_34111718_34124539
31232	chr13	+	1847	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-54	-855	-54	855	mono-exon	FALSE	NA	NA	NA	NA	NA	7	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTCCCCCTACTCCCC	7908	False	NA	NA	False	NA	NA	NA	74554473	74556320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74556300
31233	chr2	+	2177	16	ISM	ENSMUSG00000027642.16	ENSMUST00000127252.8	2314	17	4171	26	14	-26	3prime_fragment	FALSE	canonical	3	2037	junction_7	165.421831153636	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAATAAAGAGAATGGTGG	NA	False	NA	NA	False	NA	NA	NA	157125516	157167950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
31234	chr11	+	3843	8	Antisense	novelGene_ENSMUSG00000065657.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	62	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTCCTCCTCAGGACGAC	8511	False	NA	NA	False	NA	NA	NA	102369700	102446960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102372921_102378332_102378461_102391633_102391775_102398273_102398356_102398969_102399040_102418920_102418992_102429106_102429182_102446904
31235	chr3	+	1581	11	Antisense	novelGene_ENSMUSG00000015748.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAATAAGCCCTGGCTT	1750	False	NA	NA	False	NA	NA	NA	95737926	95754737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_95738282_95739875_95739935_95741064_95741149_95741394_95741515_95742665_95742780_95742955_95743056_95743725_95743872_95747983_95748062_95751497_95751664_95752235_95752543_95754685
31237	chr5	+	4362	13	NNC	ENSMUSG00000029263.16	novel	4573	13	NA	NA	182	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	21.775846711437	67	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTAACTTTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	108460683	108497216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108460945_108461824_108462031_108465128_108465339_108466690_108466880_108467761_108467904_108474682_108474896_108479840_108480059_108480549_108480832_108483969_108484428_108486420_108486613_108489660_108489971_108492089_108492254_108495699
31238	chr7	+	1098	3	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATCGCTGGGTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	110671153	110673409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673243
31239	chr1	-	4839	9	NIC	ENSMUSG00000030768.13	novel	4984	10	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	32.4169612240259	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTCTCCGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	183003032	182867829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_182871435_182877807_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182984515_182984604_183002886
31240	chr16	-	1743	1	NIC	ENSMUSG00000022757.20	novel	1945	8	NA	NA	13620	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	False	NA	NA	False	NA	NA	NA	56512437	56510694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_56510700_56512400
31241	chr9	-	3404	21	NNC	ENSMUSG00000046111.19	novel	7605	28	NA	NA	47	539	at_least_one_novel_splicesite	TRUE	canonical	2	8	junction_9	52.2086918051008	6	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGCCTCACTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	15263064	15233755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_15234380_15234864_15235010_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15246345_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258263_15258333_15262106_15262201_15262986
31242	chr5	-	2326	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	42	-720	42	720	multi-exon	FALSE	canonical	3	1678	junction_1	0	2843	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACTTTATTCAGAATTTA	NA	False	NA	NA	False	NA	NA	NA	36954074	36951490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_36953289_36953546
31244	chr9	-	2494	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	-563	1	-563	-1	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	3	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTAGTGCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	110775789	110768671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
31245	chr17	+	3407	22	FSM	ENSMUSG00000034709.9	ENSMUST00000038551.8	3141	22	115	-381	17	381	multi-exon	FALSE	canonical	3	56	junction_5	9.91871727497827	175	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGACTCCCTCTTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	88837660	88896176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_88837747_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
31246	chr15	+	4955	20	FSM	ENSMUSG00000054263.13	ENSMUST00000067190.12	4143	20	8	-820	0	820	multi-exon	FALSE	canonical	3	17	junction_15	6.67529450936089	38	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCAAATCTTACAGATAAT	NA	False	NA	NA	False	NA	NA	NA	7159047	7222044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_7159308_7183867_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7215046_7215215_7216346_7216509_7217555_7217650_7219595_7219675_7220026
31247	chr13	+	4475	10	FSM	ENSMUSG00000039087.18	ENSMUST00000149745.8	4320	10	-150	-5	-150	3	multi-exon	FALSE	canonical	1	3	junction_1	32.4029414912281	10	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTCATAGGCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	38010757	38116672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_38010952_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533
31248	chr8	-	2025	9	NIC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	-7	-5	intron_retention	FALSE	canonical	3	422	junction_2	45.6753147225063	45	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTACTTTTGGTACT	NA	False	NA	NA	False	NA	NA	NA	83500781	83490254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
31249	chr13	-	1733	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	3	-367	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	208.621667139346	4	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCAGGTGTTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	34314334	34311097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312356_34312434_34312515_34312854_34312966_34313228_34313338_34314159
31250	chr14	+	3108	26	NIC	ENSMUSG00000040040.17	novel	3088	26	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	13.7506945279139	77	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGGCTAATGACTTC	NA	False	NA	NA	False	NA	NA	NA	57661548	57755393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_57661645_57667994_57668091_57672251_57672315_57674633_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629_57733737_57744661_57744729_57754437_57754549_57754793
31251	chr17	+	3705	26	NNC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	22	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	170.260149183536	369	14	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCTAGTAGTTTCGAGT	8842	False	NA	NA	False	NA	NA	NA	35354507	35366286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35354605_35355139_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
31252	chr7	-	3615	12	NNC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	48.6031322325004	172	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTGCTTGGCTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	121732160	121706489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720428_121723517_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
31254	chr7	-	1458	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	127	323	23	-315	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTACTGTTGGTGTGTTTTG	8462	False	NA	NA	False	NA	NA	NA	99132818	99127425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
31256	chr17	-	727	1	NIC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	4394	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCTAAATCTCTTTATCT	NA	False	NA	NA	False	NA	NA	NA	47089169	47088442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_47088400_47089200
31257	chr4	-	2013	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	20	5	-2	-5	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	1	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	8828	False	NA	NA	False	NA	NA	NA	129436486	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
31258	chr9	-	3657	14	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	11	-200	intron_retention	FALSE	non_canonical	0	0	junction_8	83.3136939382304	1	126	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAAAGTATAATAGTA	6389	False	NA	NA	False	NA	NA	NA	44272956	44259424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265589_44265705_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272742
31259	chr1	+	4026	5	NIC	ENSMUSG00000042751.15	novel	539	3	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	18.7799760383234	2	162	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTAGAGTCTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	152969213	152995005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_152969301_152969782_152969860_152987887_152987990_152988125_152988194_152991313
31260	chr16	-	1752	9	NNC	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18064	10769	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	16	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTACTTTTAACCTTG	NA	False	NA	NA	False	NA	NA	NA	38411726	38378915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38379122_38384473_38384538_38393504_38393638_38396103_38396187_38402327_38402487_38405535_38405879_38406580_38406771_38408544_38408664_38411271
31261	chr4	-	3450	11	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	381.653363669181	1	127	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACGGACTGTGTTTGTTG	6782	False	NA	NA	False	NA	NA	NA	126096445	126057878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126059301_126060723_126060868_126061262_126061459_126065486_126065675_126066925_126067123_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126080227_126080382_126096362
31262	chr8	-	3864	20	NIC	ENSMUSG00000031537.16	novel	3977	21	NA	NA	0	41	intron_retention	FALSE	canonical	3	4	junction_8	23.848668784024	1	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCAGGTGTGTGTGGAT	NA	False	NA	NA	False	NA	NA	NA	23196575	23149742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
31263	chrX	+	1706	8	NNC	ENSMUSG00000031349.5	novel	2168	8	NA	NA	4	-389	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	134.879689398534	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTATCCACAGACTCTG	NA	False	NA	NA	False	NA	NA	NA	71962166	72001731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_71962300_71969899_71970017_71973229_71973389_71992839_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
31264	chr17	-	2699	20	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	10	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	217.652929647027	3	96	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCATGTGCCTGTGGGGTG	NA	False	NA	NA	False	NA	NA	NA	36280643	36267712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
31265	chr1	+	1715	2	Genic_Genomic	ENSMUSG00000101188.2	novel	1218	1	NA	NA	-15	530	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACTTGGAAACTGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	60743075	60744838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_60743419_60743466
31266	chr18	-	2934	16	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	-1	882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	378.890978163024	1	121	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGTCTTTATTCCATA	NA	False	NA	NA	False	NA	NA	NA	34784776	34765848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770192_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784523_34784599
31267	chr6	+	1946	10	FSM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	-2	1	-2	-1	multi-exon	FALSE	canonical	0	0	junction_8	176.542723818721	728	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	NA	False	NA	NA	NA	82923880	83007163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
31268	chr1	+	1554	11	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	611.341017763408	3	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724157	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729670_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
31269	chr10	-	1965	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	56	-181	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	602.178387122417	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGGGTTCCTATTACT	NA	False	NA	NA	False	NA	NA	NA	127358177	127353188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354346_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
31270	chr2	+	2488	19	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	828.792778163397	1	99	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCAGTGTTGATGGAGC	NA	False	NA	NA	False	NA	NA	NA	157121066	157167970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157164321_157164363_157165142_157165191_157167630
31271	chr5	+	2575	13	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	32.5016025245936	259	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	NA	NA	NA	146168009	146239684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
31272	chr14	-	1049	1	NIC	ENSMUSG00000097589.10	novel	1437	7	NA	NA	5800	139	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTGTGATTGGAAGTCT	NA	False	NA	NA	False	NA	NA	NA	61863541	61862492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_61862500_61863500
31273	chr14	+	3094	26	FSM	ENSMUSG00000040040.17	ENSMUST00000122063.8	3088	26	-6	0	-6	0	multi-exon	TRUE	canonical	3	32	junction_12	10.0195009855781	115	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGGCTAATGACTTC	NA	False	NA	NA	False	NA	NA	NA	57661512	57755393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_57661645_57667994_57668091_57672251_57672315_57674683_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629_57733737_57744661_57744729_57754437_57754549_57754793
31274	chr10	-	1487	9	NNC	ENSMUSG00000019942.14	novel	1253	9	NA	NA	-5	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	951.486731384101	12	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGTGGTGGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	69188745	69174131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69183220_69183512_69185925_69185989_69188665
31275	chr4	-	1666	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	785.740007890651	9	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094729_41095128_41095272_41098001
31276	chrX	-	2096	12	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTTAAAAACACAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	100492167	100474097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100474162_100480819_100480984_100483092_100483286_100485121_100485420_100486531_100486632_100486900_100487097_100487881_100487966_100488291_100488396_100488899_100488939_100489719_100489834_100491198_100491284_100491512
31277	chr15	-	2815	13	NNC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	-7	1	intron_retention	FALSE	canonical	1	3	junction_12	68.5672824474051	250	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCCATTTACTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	89239843	89235349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238984_89239558
31278	chr1	-	2903	8	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	389	265	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	187.647628956673	1	91	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCTCCAACTCTTCGTA	NA	False	NA	NA	False	NA	NA	NA	13196998	13183415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189188_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13196868
31279	chrX	+	3115	11	NNC	ENSMUSG00000000134.18	novel	3277	10	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	92.8918188001505	367	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTGAGTCTCCCGTTCT	NA	False	NA	NA	False	NA	NA	NA	7628795	7641437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7628870_7629128_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
31280	chr7	+	1147	11	Antisense	novelGene_ENSMUSG00000003435.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGCACTTCGCTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	28021498	28030927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_28021564_28021643_28021739_28021888_28021993_28023148_28023224_28023320_28023404_28025370_28025627_28028124_28028215_28028675_28028749_28028839_28028920_28029959_28030073_28030814
31281	chr3	+	3822	25	NIC	ENSMUSG00000002428.13	novel	4955	25	NA	NA	-1	4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_12	54.7622227604639	122	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACCTTCTTTGGTGTCA	6946	False	NA	NA	False	NA	NA	NA	20111982	20172644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735_20170908_20171941
31282	chr14	+	2264	8	NIC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	23	-1	intron_retention	FALSE	canonical	3	50	junction_4	562.292428821698	1	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCCCTGTGTCTGCATA	8914	False	NA	NA	False	NA	NA	NA	55777745	55786390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55782341_55782883_55785153_55785292_55785496_55785593_55785761
31283	chr10	-	2977	3	NIC	ENSMUSG00000062931.16	novel	2035	4	NA	NA	2	0	intron_retention	FALSE	canonical	3	139	junction_1	4.5	334	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077112	82060683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_82063426_82063632_82063760_82077004
31284	chr12	+	1417	5	ISM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	3261	43	2473	-43	3prime_fragment	FALSE	canonical	3	5416	junction_4	626.966655811934	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCATACAAGTATTAAATG	NA	False	NA	NA	False	NA	NA	NA	24761500	24764102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
31285	chr2	-	3307	7	NIC	ENSMUSG00000039660.17	novel	2396	9	NA	NA	3	-11	intron_retention	FALSE	canonical	3	340	junction_1	38.3405790253616	1	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCTAGAGGAATGAGCTC	NA	False	NA	NA	False	NA	NA	NA	30068451	30063495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30064198_30064933_30065082_30065198_30065825_30065930_30066505_30066626_30066677_30066750_30066841_30067334
31286	chr17	+	1639	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	33	9	3	-2	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGTCTCTGGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	27775580	27782639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
31287	chr19	-	2406	18	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	541.579811331185	1	90	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCTCTGCTTTGTCTGCC	5070	False	NA	NA	False	NA	NA	NA	53027061	52979615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52998435_52998595_53000196_53000341_53001771_53001967_53013689_53013815_53020439_53020529_53026944
31289	chr1	-	1989	9	Antisense	novelGene_ENSMUSG00000026456.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGGGCCCGGAGGCGGAG	5228	False	NA	NA	False	NA	NA	NA	134339465	134333721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_134333790_134334048_134334200_134334335_134334409_134334782_134334889_134335309_134335440_134336139_134336228_134336972_134337422_134338227_134338329_134338642
31290	chr15	-	2530	15	NIC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	28	-4	intron_retention	FALSE	canonical	3	559	junction_10	44.7711300017394	1558	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGACCCTGGCTGGCAGCA	NA	False	NA	NA	False	NA	NA	NA	76361449	76337192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
31292	chr11	-	1867	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	183	3	-33	-3	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	1463	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACACTTTGGCTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	40585847	40570143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
31293	chr7	-	1430	14	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	4	1	combination_of_known_splicesites	FALSE	canonical	3	31	junction_12	671.831542354015	42	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGTGTCCTCAGAG	-9	True	NA	NA	False	NA	NA	NA	45083697	45071319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45080743_45080799_45083675
31296	chr5	-	1368	11	NNC	ENSMUSG00000029455.15	novel	1799	11	NA	NA	-1055	172	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	199.10652927516	7	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	121718784	121705768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121705973_121708797_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676
31297	chr5	+	1443	5	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-35	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1426.41938082739	185	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTCTCGCTGTGTGGTCT	721	False	NA	NA	False	NA	NA	NA	77099588	77115353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109084_77114508
31298	chr5	-	2242	10	FSM	ENSMUSG00000039753.17	ENSMUST00000124610.6	2306	10	-21	85	-2	-85	multi-exon	FALSE	canonical	3	499	junction_2	33.8234340562579	42	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGCAAAATACAACACAT	8855	False	NA	NA	False	NA	NA	NA	43939465	43908032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
31299	chr4	-	2911	13	NIC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-64	0	intron_retention	FALSE	canonical	1	5	junction_5	34.5418425809755	116	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	232	False	NA	NA	False	NA	NA	NA	43010286	43002342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005009_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43009280_43009706_43009801_43010001
31301	chr7	-	2022	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	-36	-38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	621.456675883364	1	78	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGGTGTGTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	99002357	98994639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998350_98998409_98998672_99002259
31303	chr3	-	1968	6	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_4	751.872701991501	52	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7190	False	NA	NA	False	NA	NA	NA	89906004	89902759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903706_89904120_89905311_89905834
31304	chr5	-	1956	12	NIC	ENSMUSG00000029145.13	novel	1767	13	NA	NA	-15	0	intron_retention	FALSE	canonical	2	26	junction_7	183.502336328496	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	31350373	31344910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348270_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
31306	chr11	-	1287	5	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-75	0	intron_retention	FALSE	non_canonical	0	0	junction_2	9264.45590347863	7	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6392	False	NA	NA	False	NA	NA	NA	69812091	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808525_69808742_69808848_69809976_69810163_69811988
31307	chr2	+	3206	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	27	2466	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	32.5	190	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGTCTTAGCTGCAT	NA	False	NA	NA	False	NA	NA	NA	179056755	179061141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_179056894_179057552_179057714_179058234
31308	chr10	-	1971	11	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	7	-178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	625.125619375818	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358306	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355113_127355491_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
31310	chr4	-	1538	5	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	22983	12	1704	-12	3prime_fragment	FALSE	canonical	3	810	junction_4	84.5469544099609	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122756721	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693
31311	chr6	-	1420	8	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2508.35805307954	7	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446857	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440462_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
31312	chr18	+	1988	4	FSM	ENSMUSG00000110277.3	ENSMUST00000211710.2	2003	4	21	-6	2	0	multi-exon	FALSE	canonical	3	89	junction_2	1.63299316185545	206	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGTCTTGGTCATAGTA	NA	False	NA	NA	False	NA	NA	NA	90597921	90610652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_90598024_90607079_90607207_90607397_90607459_90608954
31313	chr1	+	2744	8	FSM	ENSMUSG00000023150.15	ENSMUST00000111887.10	2783	8	39	0	-30	0	multi-exon	FALSE	canonical	3	234	junction_7	396.626282743927	36	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGTCTGTAGCCTTTTA	NA	False	NA	NA	False	NA	NA	NA	151220298	151232550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917
31314	chr1	+	2965	6	FSM	ENSMUSG00000026456.19	ENSMUST00000172496.8	957	6	-30	-1978	-5	-125	multi-exon	FALSE	canonical	3	291	junction_1	62.88083968905	16	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATTCTCTTGCTGGTA	8180	False	NA	NA	False	NA	NA	NA	134333727	134338582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141
31317	chr18	+	2395	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	-4	3	0	-3	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGGTCTTGCCCTTGAGT	3963	False	NA	NA	False	NA	NA	NA	38383307	38395679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
31319	chr19	+	2143	14	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	362.44519683679	2	64	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTGTGATTTTCAGA	218	False	NA	NA	False	NA	NA	NA	46064382	46072901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071740_46071981_46072066_46072189_46072283_46072450_46072513_46072767
31320	chr3	+	3859	8	NNC	ENSMUSG00000027858.14	novel	4484	8	NA	NA	62	-55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	20.3459869181485	53	11	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATTGCATGTTAATTA	NA	False	NA	NA	False	NA	NA	NA	102642334	102679553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102642382_102657073_102657126_102664637_102664707_102665472_102665548_102666625_102666725_102668212_102668285_102672500_102672585_102676192
31321	chrX	-	3790	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114918.9	3226	16	33	-597	3	-154	multi-exon	TRUE	canonical	3	25	junction_4	10.7695042700313	151	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGCTTCTCTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	48377086	48098737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
31322	chr8	+	1588	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	51	-5	51	-4	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	2646	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGCTTTGTTTTAAA	5076	False	NA	NA	False	NA	NA	NA	34221911	34267197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
31323	chr3	-	2424	12	NIC	ENSMUSG00000068921.15	novel	1409	13	NA	NA	33	-5	intron_retention	FALSE	canonical	0	0	junction_11	258.019154904284	8	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGTGCTGTATTGGATT	NA	False	NA	NA	False	NA	NA	NA	88858455	88830946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
31324	chr11	-	925	6	Antisense	novelGene_ENSMUSG00000020407.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAAGTTGGATGAAGCA	NA	False	NA	NA	False	NA	NA	NA	9086160	9079511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_9079604_9081627_9081789_9083233_9083347_9084719_9084930_9085161_9085309_9085958
31325	chr3	-	1735	12	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	282.273063972863	26	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTCTCTGACTCTCC	177	False	NA	NA	False	NA	NA	NA	153650084	153627996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628613_153631398_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
31326	chr13	-	2498	15	NNC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	22	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	39.2030949423795	93	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGAAATCTTATTTCAAT	NA	False	NA	NA	False	NA	NA	NA	55248045	55176109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223814_55224073_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
31328	chr10	+	811	5	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	3300	15	-1430	5prime_fragment	FALSE	canonical	3	6189	junction_1	376.411012059956	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGCAGCCGAGCGTGCC	2196	False	NA	NA	False	NA	NA	NA	81012479	81015032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914
31329	chr15	-	1612	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	4	0	-4	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	158	False	NA	NA	False	NA	NA	NA	98832319	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
31330	chr16	+	3790	19	NNC	ENSMUSG00000022842.19	novel	3152	19	NA	NA	58	-1	intron_retention	FALSE	canonical	0	0	junction_9	12.5929874665757	57	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGACTCCAGCTATTTCAC	NA	False	NA	NA	False	NA	NA	NA	20448658	20465225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20452968_20453041_20456410_20456605_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463187_20463809
31331	chr4	+	2353	11	FSM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	9	9	9	-9	multi-exon	TRUE	canonical	3	174	junction_5	14.102836594104	442	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGGTTGCCTGTTGTCG	NA	False	NA	NA	False	NA	NA	NA	99786619	99844482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99787009_99818652_99818816_99819240_99819388_99820714_99820841_99821871_99822063_99824255_99824411_99827183_99827300_99836061_99836198_99839080_99839265_99841165_99841301_99843871
31332	chr16	-	2157	8	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	-20	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.156061384151	905	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCAGATTATGTGCGCA	NA	False	NA	NA	False	NA	NA	NA	5073867	5062024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
31334	chr11	-	2709	12	FSM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	15	-1	-6	0	multi-exon	FALSE	canonical	3	14	junction_11	20.3534877308514	180	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGGAACGTTTACTAGA	4480	False	NA	NA	False	NA	NA	NA	73089853	73074421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73087924_73088079_73089743
31336	chr3	-	1979	14	NNC	ENSMUSG00000028107.15	novel	2157	16	NA	NA	3	-936	intron_retention	FALSE	canonical	2	19	junction_6	230.715121861618	1	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTAGCAAGATTATCAGT	NA	False	NA	NA	False	NA	NA	NA	95662192	95648266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653064_95653175_95653344_95653483_95654750_95654969_95655353_95655453_95655798_95655867_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
31337	chr8	-	2036	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	26	junction_3	59.0398380700595	71	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGTTAGCGATATTGT	NA	False	NA	NA	False	NA	NA	NA	106578636	106571306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572796_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576556_106578502
31338	chrX	-	1776	6	FSM	ENSMUSG00000031167.17	ENSMUST00000141925.8	1274	6	27	-529	1	0	multi-exon	FALSE	canonical	3	764	junction_2	204.799804687407	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGATAATGCTTTTTC	6563	False	NA	NA	False	NA	NA	NA	8011934	8008599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010919_8011193_8011312_8011876
31341	chr12	-	2172	12	Intergenic	novelGene_4478	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGACAAACTGAAGC	NA	False	NA	NA	False	NA	NA	NA	110538122	110452223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_110452385_110488922_110489017_110510543_110510618_110512026_110512120_110512202_110512334_110517493_110517554_110519216_110519325_110521273_110521331_110527731_110527896_110534154_110534290_110535387_110535490_110537129
31342	chr19	-	2392	3	Antisense	novelGene_ENSMUSG00000065087.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAGAAAGAC	9582	False	NA	NA	False	NA	NA	NA	8703801	8700941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8702618_8702845_8703189_8703428
31343	chr2	+	4054	25	FSM	ENSMUSG00000026854.17	ENSMUST00000102849.11	5088	25	87	947	3	-943	multi-exon	FALSE	canonical	1	7	junction_21	9.09889721645187	49	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTAGCTTGTACTGTGAC	NA	False	NA	NA	False	NA	NA	NA	30872377	30912651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30872411_30886059_30886160_30888784_30888881_30890068_30890123_30892567_30892631_30892927_30893060_30894415_30894513_30894943_30895014_30896395_30896510_30897790_30897870_30900177_30900626_30900990_30901135_30901392_30901509_30901634_30901808_30902318_30902414_30906299_30906334_30906504_30906551_30907140_30907322_30907396_30907524_30907693_30907864_30907944_30908027_30908726_30908836_30909796_30909900_30910840_30910913_30911335
31344	chr7	-	2018	1	NIC	ENSMUSG00000078768.3	novel	1709	4	NA	NA	11108	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	45	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATCTGTGTGGCAGTGTA	NA	False	NA	NA	False	NA	NA	NA	29778780	29776762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29776800_29778800
31345	chr19	+	2324	6	NNC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	314.748407462214	6	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATTTTTTTTATGAAGAG	1995	False	NA	NA	False	NA	NA	NA	5416971	5421552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5417239_5418085_5418278_5418449_5418559_5418644_5418754_5418922_5418971_5419953
31347	chr1	+	3657	7	NIC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	-37	-13	intron_retention	TRUE	canonical	3	35	junction_5	148.885582467433	9	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATGATCTCAAGGAATCA	8148	False	NA	NA	False	NA	NA	NA	134333695	134339461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134337425_134338230
31348	chr5	-	2624	7	NNC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	-1	-48	intron_retention	FALSE	canonical	0	0	junction_1	369.133858587309	3	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAAAACACTCGCTTCCG	NA	False	NA	NA	False	NA	NA	NA	114046767	113980544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982409_113987680_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
31349	chr17	-	2026	5	FSM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	-9	0	-9	0	multi-exon	FALSE	canonical	3	15	junction_4	147.031246679065	55	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	NA	False	NA	NA	NA	87573341	87562085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87571568_87571794_87573262
31350	chr4	+	2393	12	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	44	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	295.42122889078	49	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCCTGGATGAGGC	6668	False	NA	NA	False	NA	NA	NA	135975327	136002214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135993010_135993700_135993737_135994923_135995475_135998543_135998691_136000954_136001027_136002090
31351	chr4	-	1715	5	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	8	82	intron_retention	FALSE	non_canonical	0	0	junction_1	29.1150734156725	29	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTCAAGTTTTTTTAGCA	NA	False	NA	NA	False	NA	NA	NA	116413124	116408747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116409308_116409505_116410151_116410607_116410927_116411964_116412101_116413069
31352	chr16	+	1189	10	Antisense	novelGene_ENSMUSG00000025613.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGATAGAAACTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	87280762	87287258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_87280954_87281690_87281814_87282469_87282633_87282721_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211
31353	chr11	-	1752	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1545.22667341145	2	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGATTGTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	120472455	120468937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469531_120469671_120470257_120470341_120470406_120470493_120470571_120470792_120470906_120471007_120471220_120472347
31354	chr10	-	3869	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	3	0	3	0	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	428	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	78020980	78006742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
31355	chr3	-	2576	6	Fusion	ENSMUSG00000038975.15_ENSMUSG00000065463.3	novel	1169	9	NA	NA	4	-2	intron_retention	FALSE	canonical	3	355	junction_3	257.966974630475	2	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTTAGTCTTCTGAGTC	6158	False	NA	NA	False	NA	NA	NA	153618588	153613092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_153613379_153613691_153613842_153614426_153615236_153615897_153616004_153616327_153616526_153617561
31356	chr9	+	3193	4	FSM	ENSMUSG00000086228.4	ENSMUST00000239433.2	846	4	-201	-2146	-201	-182	multi-exon	FALSE	canonical	3	844	junction_1	5.79271573232759	2447	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCTTAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	65278926	65287477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080
31357	chr1	+	3216	1	NIC	ENSMUSG00000038806.8	novel	3213	7	NA	NA	2781	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	2	104	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAATTTTAAGCAATTG	NA	False	NA	NA	False	NA	NA	NA	180692445	180695661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180692400_180695700
31358	chr19	-	1951	13	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	4308	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	948.088193272241	2	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATATGTTGCTACGGTCT	8071	False	NA	NA	False	NA	NA	NA	7013027	6998080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006591_7009848_7010018_7011530_7011673_7012014_7012157_7012863
31359	chr3	-	4954	2	NIC	ENSMUSG00000027995.11	novel	3014	3	NA	NA	149	-10	intron_retention	FALSE	canonical	3	25	junction_1	0	1	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCAGGAGACCGGTTTC	NA	False	NA	NA	False	NA	NA	NA	83748925	83743588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_83748444_83748826
31361	chr14	+	1842	14	Antisense	novelGene_ENSMUSG00000077797.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGCGAACTGGAACTGCG	1523	False	NA	NA	False	NA	NA	NA	30734402	30740960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_30734587_30734673_30734749_30735124_30735523_30735609_30735751_30736007_30736184_30736545_30736633_30736860_30736984_30737231_30737345_30738281_30738348_30738767_30738864_30739012_30739127_30739234_30739372_30739766_30739824_30740885
31362	chr5	-	2071	13	Antisense	novelGene_ENSMUSG00000093413.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCGCCGCCATGGCTGG	3875	False	NA	NA	False	NA	NA	NA	129875191	129864516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129864640_129865297_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129869004_129869080_129869164_129870696_129870780_129871410_129871561_129872178_129872338_129874372_129874494_129874585
31363	chr9	+	1778	5	ISM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	4643	5	170	2	3prime_fragment	FALSE	canonical	3	906	junction_2	43.7207044773983	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCAACTGGTGTTGTAAT	NA	False	NA	NA	False	NA	NA	NA	55121116	55131710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
31365	chr11	-	2150	22	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	139.889606621851	2	43	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	54924276	54869933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892137_54898698_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
31366	chr15	-	2400	2	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	22849	-992	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	5	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGCGCAGCCCTTTGT	7223	False	NA	-107	True	NA	NA	NA	98638024	98635506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98636363_98636480
31367	chr14	-	2429	2	Antisense	novelGene_ENSMUSG00000115684.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACGGTGCAAACTGCACC	NA	False	NA	NA	False	NA	NA	NA	119518292	119515796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_119517751_119517817
31368	chr6	+	1240	9	Antisense	novelGene_ENSMUSG00000030357.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTGTCCTTGCGGTCCA	7742	False	NA	NA	False	NA	NA	NA	128407642	128413551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_128407846_128409386_128409625_128410070_128410254_128410487_128410593_128410683_128410765_128411271_128411425_128411714_128411823_128412669_128412822_128413534
31369	chr1	+	2747	5	NNC	ENSMUSG00000048000.16	novel	3015	4	NA	NA	0	-70	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	93.7106584119437	192	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGATGTTTTCAGTGTT	NA	False	NA	NA	False	NA	NA	NA	87254751	87285436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702_87284490_87284687
31370	chr2	+	3713	2	ISM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	40	-2465	40	2465	intron_retention	FALSE	canonical	3	65	junction_1	0	20	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCCTGTCTTAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	179056768	179061140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179056894_179057552
31371	chr10	-	2300	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	-1	-170	-1	-99	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	565	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTACCTGTGGTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	13428884	13399689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
31372	chr4	-	1535	8	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	879.814985189082	6	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAACTTCTTTTTGTGTG	2	True	NA	NA	False	NA	NA	NA	41098180	41092727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41092908_41093059_41093523_41093591_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
31373	chr7	-	2987	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	33	12	0	-12	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	208	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAACTGCCATCCATTCA	NA	False	NA	NA	False	NA	NA	NA	25418480	25410542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
31374	chr6	-	1488	10	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3032.55537439392	25	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446825	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440179_51441399_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
31375	chrX	+	3115	16	NIC	ENSMUSG00000031065.15	novel	3270	16	NA	NA	-21	0	intron_retention	FALSE	canonical	3	24	junction_1	416.044580944559	739	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	1884	False	NA	NA	False	NA	NA	NA	20554216	20566119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20554601_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
31376	chrX	+	2810	10	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	64	-33	intron_retention	FALSE	canonical	3	728	junction_6	47.3648825477846	1	112	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAAACCTCCCAATA	6026	False	NA	NA	False	NA	NA	NA	73348681	73355431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
31377	chr3	-	2377	7	Antisense	novelGene_ENSMUSG00000090005.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89969749	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966928_89968894
31378	chr15	+	1584	14	Antisense	novelGene_ENSMUSG00000022336.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGGGGAAAGGAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	43113561	43146091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_43113633_43114874_43115010_43115599_43115704_43124455_43124564_43125992_43126096_43126603_43126729_43128893_43129022_43129529_43129654_43134272_43134380_43135671_43135714_43138631_43138751_43141703_43141819_43144414_43144624_43145997
31380	chr7	-	2438	12	NNC	ENSMUSG00000030760.15	novel	1440	12	NA	NA	3	1258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	66.6248904919014	243	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAGGAAGGTAGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	97958710	97864391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_97864679_97864749_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
31381	chr10	+	2522	4	ISM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	3776	6	3146	-6	3prime_fragment	FALSE	canonical	3	1648	junction_2	5.35412613473634	1	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAGTGTCATATTTTGA	NA	False	NA	NA	False	NA	NA	NA	41399185	41407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_41399241_41400102_41400142_41402822_41402880_41404667
31382	chr15	+	2429	18	ISM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	12606	-6	12606	0	3prime_fragment	FALSE	canonical	3	75	junction_7	12.0037479729426	193	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	98018952	98030328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
31383	chr14	+	3014	15	FSM	ENSMUSG00000022214.16	ENSMUST00000072530.11	2601	15	-411	-2	0	0	multi-exon	FALSE	canonical	3	17	junction_1	34.3960278912243	186	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	55797974	55807521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55798433_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
31384	chr5	+	1568	11	NNC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	395.691091635887	12	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCTATGCTTAATTGC	NA	False	NA	NA	False	NA	NA	NA	134611590	134627182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_134611838_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
31385	chr8	+	2090	8	NNC	ENSMUSG00000031799.11	novel	1803	9	NA	NA	-221	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	264.24702419501	11	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	NA	NA	NA	72889430	72906984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72889590_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
31386	chr8	-	2134	15	NNC	ENSMUSG00000031948.15	novel	2131	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	498.839326305964	2	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737907	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737847
31387	chr13	+	3264	17	NNC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	-20	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	40.3220918821184	6	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCAGGCTATTGTGATC	5518	False	NA	NA	False	NA	NA	NA	51805756	51838078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819345_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
31388	chr8	+	2468	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	171	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	426.059380316354	1	102	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTATGATAGTAGTGCT	NA	False	NA	NA	False	NA	NA	NA	75836422	75854310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845892_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
31389	chr9	-	4231	30	Fusion	ENSMUSG00000003131.8_ENSMUSG00000034908.17	novel	4012	27	NA	NA	1	-4	multi-exon	FALSE	canonical	0	0	junction_25	83.9944083977782	100	12	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGATTTGGGGTCTTACT	4137	False	NA	NA	False	NA	NA	NA	45896124	45849176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
31391	chr14	+	2578	13	NNC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	59.8901772691761	1	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	55798493	55807521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55798900_55800348_55800477_55800828_55800957_55801509_55801611_55801827_55801975_55802275_55802380_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
31392	chr15	-	1257	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	105	381	-22	-381	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCAACACCACAGCCATT	136	False	NA	NA	False	NA	NA	NA	98832341	98829686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
31393	chr4	-	1640	4	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	461.976430375211	47	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224609	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219489_127219594_127220210_127220315_127220565_127224294
31394	chr8	-	3251	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	222	1703	0	-7	multi-exon	FALSE	canonical	3	27	junction_11	35.6008635794598	1	88	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAACTTTTG	9910	False	NA	NA	False	NA	NA	NA	25592170	25530862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
31395	chr5	-	3418	17	NIC	ENSMUSG00000006641.13	novel	3436	18	NA	NA	-123	-2	intron_retention	FALSE	canonical	3	19	junction_16	28.9503885984282	2	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTCTGGCCTCTGTGTT	610	False	NA	NA	False	NA	NA	NA	31205546	31193382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205515
31396	chr17	+	2707	13	NNC	ENSMUSG00000069135.12	novel	3505	13	NA	NA	28	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	103.505602371187	24	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACAGTGTTGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8384399	8415309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352_8414121_8414464
31397	chr4	-	2786	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	40	-15	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_18	115.743916993454	1	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAGAAAGGAATA	NA	False	NA	NA	False	NA	NA	NA	115980816	115954186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980697
31398	chr2	+	2941	14	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	15.7213155719746	1	97	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTTTGAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	121340313	121375341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366058_121367587_121367642_121372781_121373496_121374761
31399	chr14	+	2015	15	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	-2	intron_retention	FALSE	canonical	3	692	junction_5	48.0921734054216	1469	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTTGGCTTCTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	51045381	51058755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
31400	chr15	-	2777	8	Antisense	novelGene_ENSMUSG00000022385.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	96	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGGTTTAAGTCCAAACTG	NA	False	NA	NA	False	NA	NA	NA	85760759	85746351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_85746895_85748305_85748462_85751673_85751801_85752878_85753258_85755708_85755780_85757837_85758074_85759176_85759419_85759736
31401	chr11	-	902	3	ISM	ENSMUSG00000020400.18	ENSMUST00000102730.9	2787	19	46015	0	4180	0	3prime_fragment	FALSE	canonical	3	201	junction_1	16	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	NA	False	NA	NA	False	NA	NA	NA	54807721	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_54802324_54806322_54806414_54807621
31402	chr11	+	1833	13	NIC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	0	-69	intron_retention	FALSE	canonical	3	682	junction_1	159.983050317491	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTCCATGTAGTTCC	1424	False	NA	NA	False	NA	NA	NA	120675130	120679854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679423_120679495
31403	chr1	-	1873	15	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-8	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3536.13537247218	1	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTCTGTTGCCAGACTT	NA	False	NA	NA	False	NA	NA	NA	86287094	86278226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278579_86278644_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281547_86282767_86282867_86283778_86283916_86284092_86284180_86284277_86284420_86285023_86285177_86285828_86285946_86286927
31404	chr6	-	3709	2	NIC	ENSMUSG00000034203.9	novel	3472	3	NA	NA	21	-2014	intron_retention	FALSE	canonical	3	1059	junction_1	0	2	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCCAGGCAGAAAGGTCG	NA	False	NA	NA	False	NA	NA	NA	91450410	91441167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_91444764_91450297
31407	chr4	-	4288	4	NNC	ENSMUSG00000037752.5	novel	4245	3	NA	NA	8	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	21.9544984001001	114	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTACAATTGTTTATTTT	4070	False	NA	NA	False	NA	NA	NA	132459831	132452213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132455882_132458186_132458384_132458773_132458849_132459483
31409	chr8	-	1907	6	Antisense	novelGene_ENSMUSG00000031562.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	553	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTCGGGAGGGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	48594700	48563214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_48563317_48564693_48564822_48564998_48565138_48590291_48590407_48591813_48591912_48593375
31411	chr4	-	626	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	7	6	1	-2	multi-exon	FALSE	canonical	3	2176	junction_1	0	7881	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAAGCGTGGTTTTGTGTT	-9	True	NA	NA	False	NA	NA	NA	45108107	45105213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_45105645_45107912
31412	chr5	-	1363	1	NIC	ENSMUSG00000023079.15	novel	3461	30	NA	NA	2112	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	19	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACAAAAGCGTCACTTT	NA	False	NA	NA	False	NA	NA	NA	134387882	134386519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_134386500_134387900
31414	chr7	+	2310	12	NIC	ENSMUSG00000030555.17	novel	2492	12	NA	NA	-29	1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	27.3674113977112	138	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTTGTGTGTTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	67297128	67376325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_67297594_67301670_67301720_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
31416	chr15	+	1518	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	430	34	0	-34	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	4	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTCAATAAAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	98928201	98935957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
31418	chr10	+	2270	14	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4952	7223	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGCAAGACAAGAACCA	NA	False	NA	NA	False	NA	NA	NA	86526704	86537893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_86526995_86527494_86527611_86528001_86528159_86528248_86528329_86529240_86529378_86529773_86530026_86530214_86530480_86531336_86531405_86531521_86531597_86531680_86531830_86532584_86532698_86534180_86534305_86534447_86534564_86537565
31419	chr13	+	2568	12	NIC	ENSMUSG00000035762.12	novel	2632	12	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	77.7892894537481	12	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	84370458	84443989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
31420	chr3	-	2469	15	NNC	ENSMUSG00000028099.9	novel	2406	15	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_13	74.2472771437802	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	96634787	96618838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631402_96633149_96633316_96634428
31421	chr18	-	2308	7	NIC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	15	-3	intron_retention	FALSE	canonical	3	1190	junction_4	90.0729642505946	45	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCATTTCTTGTTATCTGT	NA	False	NA	NA	False	NA	NA	NA	77855465	77845271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77849817_77851772_77851909_77854563_77854739_77855419
31422	chr15	-	2889	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	22	3	22	-3	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	545	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTGGCGTTGTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	35155930	34875644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
31423	chr12	-	1327	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	107	-17	-107	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTAGCCTCGCTGTAGA	NA	False	NA	NA	False	NA	NA	NA	111638734	111635901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
31424	chr16	-	3507	11	FSM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	-7	4411	-7	652	multi-exon	TRUE	canonical	3	23	junction_5	7.29383301152419	67	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGTAAGAAATCAATATGTA	NA	False	NA	NA	False	NA	NA	NA	55755225	55724661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_55726233_55731917_55731994_55735219_55735995_55738900_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
31425	chr2	-	2553	7	NNC	ENSMUSG00000026889.13	novel	1000	7	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	125.719263970695	455	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTATGTGGTCTTATTGTC	NA	False	NA	NA	False	NA	NA	NA	36026621	36006091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36025641_36025743_36026493
31426	chr11	-	2478	24	NIC	ENSMUSG00000018340.14	novel	2471	25	NA	NA	-7	79	combination_of_known_splicesites	FALSE	canonical	3	9	junction_11	138.51551611339	23	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTGACTGACGGGTGA	NA	False	NA	NA	False	NA	NA	NA	54924278	54869854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
31427	chr12	+	2198	6	ISM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	2825	0	-482	0	3prime_fragment	FALSE	canonical	3	527	junction_2	75.3567515223421	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	NA	False	NA	NA	NA	72135455	72148235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
31428	chr3	+	1937	7	NNC	ENSMUSG00000028048.12	novel	1978	12	NA	NA	-5	1053	intron_retention	FALSE	canonical	2	5	junction_5	153.660610871275	5	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCATTACGGTGAGCCGCC	NA	False	NA	NA	False	NA	NA	NA	89110229	89114748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113676_89114066_89114120_89114533
31429	chr13	+	1973	2	FSM	ENSMUSG00000078941.10	ENSMUST00000185901.2	452	2	-19	-1502	0	1	multi-exon	FALSE	canonical	3	1782	junction_1	0	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTACTTTGGCAGTT	NA	False	NA	NA	False	NA	NA	NA	100787850	100792568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_100787954_100790698
31430	chr1	-	1683	5	NIC	ENSMUSG00000026701.16	novel	959	6	NA	NA	0	-13	combination_of_known_junctions	FALSE	canonical	3	3	junction_4	765.536209137099	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATCCTGATCAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	161078736	161068597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078326
31431	chr6	+	1346	11	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-11	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1853.37399355877	4	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5177	False	NA	NA	False	NA	NA	NA	85429062	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444016_85445137
31432	chr16	+	2166	6	NNC	ENSMUSG00000022900.15	novel	2850	7	NA	NA	-7268	-426	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	122.287202928189	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGTTTCTACTTCTAT	NA	False	NA	NA	False	NA	NA	NA	36528631	36546677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36542242_36543042_36545878
31433	chr2	+	2754	14	NNC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	34	-949	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	220.209045383334	1	91	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGATATGTGGTTACC	NA	False	NA	NA	False	NA	NA	NA	29825473	29849434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829500_29829556_29830093_29830198_29832612_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842691_29848401
31434	chr5	-	2397	13	Antisense	novelGene_ENSMUSG00000029387.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	38	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCGCACTCGATTTCCG	NA	False	NA	NA	False	NA	NA	NA	124734897	124717214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_124717264_124720509_124720588_124721582_124721673_124721994_124722102_124722196_124722374_124726692_124726751_124727433_124727462_124728410_124729004_124730540_124730594_124732821_124732892_124733612_124733751_124733863_124733903_124733980
31437	chr10	-	1931	1	FSM	ENSMUSG00000070063.3	ENSMUST00000093556.3	129	1	-1653	-149	-1653	149	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	23663026	23661095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_23661100_23663000
31439	chr6	-	3742	9	NIC	ENSMUSG00000001642.19	novel	1387	10	NA	NA	0	-1	intron_retention	FALSE	canonical	3	629	junction_3	204.564170860882	4	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGGTGGTGGTCCGTTTT	NA	False	NA	NA	False	NA	NA	NA	34294413	34280869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_34281275_34283474_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
31442	chr3	-	3543	16	FSM	ENSMUSG00000028078.15	ENSMUST00000195561.6	3486	16	-65	8	-21	-8	multi-exon	FALSE	canonical	3	155	junction_11	36.9688156874593	187	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTCTTCAGAAAATCCATG	NA	False	NA	NA	False	NA	NA	NA	86827707	86693473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
31444	chr12	-	2500	11	NNC	ENSMUSG00000021266.17	novel	2878	11	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	784.987490346184	1	98	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTCTGTCACTGTCT	NA	False	NA	NA	False	NA	NA	NA	108860063	108825964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826083_108826259_108827353_108828728_108828839_108832015_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
31445	chr4	-	2362	15	NNC	ENSMUSG00000037188.8	novel	2789	16	NA	NA	12276	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.5973966373229	11	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	NA	False	NA	NA	NA	135288665	135269198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135269908_135273576_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279191_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479
31446	chr3	+	2797	9	NIC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	41	1	intron_retention	FALSE	canonical	3	130	junction_1	26.4764045897475	7	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTTGCGTTCCTACCTT	NA	False	NA	NA	False	NA	NA	NA	95190566	95203473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202737_95202961
31447	chr16	-	3363	1	Antisense	novelGene_ENSMUSG00000053062.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAAGGGGGGGTGGGGAG	9437	False	NA	NA	False	NA	NA	NA	84574089	84570726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_84570700_84574100
31450	chr5	-	4773	18	FSM	ENSMUSG00000039987.16	ENSMUST00000118174.8	4840	18	56	11	9	-11	multi-exon	TRUE	canonical	3	159	junction_9	38.2607155309617	97	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACTGTACCTCAGCAC	NA	False	NA	NA	False	NA	NA	NA	21087066	20963671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
31451	chr7	-	2026	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	26	20	4	-20	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	62	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCAAACCTCATCTCAAA	NA	False	NA	NA	False	NA	NA	NA	16761815	16738584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
31452	chrX	+	2404	17	NNC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.695912498005	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGGCCTTTGCTTGTTT	1121	False	NA	NA	False	NA	NA	NA	20664050	20726752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20664121_20691484_20691540_20716161_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
31453	chr11	+	1797	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	-12	-1	-12	1	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	1428	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGTGTGGTCCCATTT	9229	False	NA	NA	False	NA	NA	NA	62770268	62786012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
31454	chr9	+	2615	10	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	2	-2	intron_retention	FALSE	canonical	3	217	junction_7	151.661904687147	15	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCTTTTATAGTTTGTA	9074	False	NA	NA	False	NA	NA	NA	15217511	15228270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225561_15226397_15226428_15226678_15226737_15228184
31455	chr2	+	3013	15	FSM	ENSMUSG00000027330.17	ENSMUST00000079857.9	3004	15	-10	1	-1	-1	multi-exon	FALSE	canonical	3	36	junction_6	17.0899481137484	164	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATCTGTTTGTTATGCAG	NA	False	NA	NA	False	NA	NA	NA	131028867	131040416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033687_131034476_131034609_131034987_131035069_131035158_131035333_131035514_131035608_131036034_131036098_131036258_131036358_131036545_131036680_131038896_131039009_131039148
31456	chrX	+	1030	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	237	-57	237	57	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13069046	13070076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13069000_13070100
31457	chr8	-	3088	12	NNC	ENSMUSG00000036534.7	novel	3315	12	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	99.8602329043072	1	32	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAACTGTGTCTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	96580141	96562553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96564300_96567041_96567097_96568149_96568222_96568874_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
31458	chr10	-	3616	25	NNC	ENSMUSG00000034667.9	novel	5992	25	NA	NA	7	-10	intron_retention	FALSE	canonical	0	0	junction_19	370.327030305648	1	117	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATACACCAAGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	121462214	121425533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449441_121450884_121451123_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
31459	chr11	+	3307	1	Genic_Genomic	ENSMUSG00000020803.4	novel	NA	NA	NA	NA	7	845	mono-exon	FALSE	NA	NA	NA	NA	NA	19	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAAAGGTGTTTGAGGCT	NA	False	NA	NA	False	NA	NA	NA	72098379	72101686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_72098400_72101700
31460	chr2	+	2229	17	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-115	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	778.75654090351	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157121230	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144436_157152127_157152217_157154410_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
31461	chr10	+	1813	11	Antisense	novelGene_ENSMUSG00000004937.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCGCAACTGGCCATGGA	5666	False	NA	NA	False	NA	NA	NA	80879910	80887986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_80880833_80882018_80882149_80882308_80882399_80883472_80883510_80884212_80884277_80884671_80884811_80885086_80885192_80885615_80885714_80886830_80886908_80887050_80887166_80887950
31462	chr1	-	2059	14	FSM	ENSMUSG00000026209.16	ENSMUST00000187836.7	1862	14	-198	1	25	-1	multi-exon	FALSE	canonical	3	848	junction_13	52.2384156632446	1842	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTCTGTGCTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	75293991	75285209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353
31463	chr18	+	1608	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-105	-148	-105	148	mono-exon	FALSE	NA	NA	NA	NA	NA	6	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	82356481	82358089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
31464	chr11	+	1846	14	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-11	-783	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	305.460095302947	14	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	NA	False	NA	NA	False	NA	NA	NA	3913963	3929221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919460_3923252_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
31465	chr7	-	1901	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	4	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	621.456675883364	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGGTGTGTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	99002317	98994639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98994923_98995063_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
31466	chr3	+	1843	9	Antisense	novelGene_ENSMUSG00000065463.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	760	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAAGCGCGCGGGAGCAC	NA	False	NA	NA	False	NA	NA	NA	153612941	153618589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_153613381_153613692_153613838_153614419_153615096_153615181_153615235_153615699_153615797_153615895_153616004_153616327_153616525_153617560_153617669_153618569
31467	chr7	+	2750	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	27	1050	-15	-1050	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	1	104	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCAAGAAGAGATTGTAG	NA	False	NA	NA	False	NA	NA	NA	103868028	103883309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
31468	chr6	+	2771	10	NIC	ENSMUSG00000030264.15	novel	692	4	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	227.396428737281	251	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	113023378	113045234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113024153_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
31469	chr13	-	2919	5	NIC	ENSMUSG00000021576.7	novel	1131	6	NA	NA	-11	-3	intron_retention	FALSE	canonical	3	601	junction_2	92.3918286430137	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCCTAGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	74465414	74451638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74452168_74453659_74453770_74457802_74459832_74464448_74464511_74465225
31470	chr4	-	3197	4	NIC	ENSMUSG00000028907.8	novel	4008	6	NA	NA	5	-1676	intron_retention	FALSE	canonical	3	1436	junction_2	128.691707407881	1331	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAAACACCCCCAAATTC	NA	False	NA	NA	False	NA	NA	NA	124587388	124574265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_124577142_124577545_124577649_124579881_124579944_124587232
31472	chr1	-	5087	15	ISM	ENSMUSG00000026235.15	ENSMUST00000188797.7	3612	17	9	1926	0	-1434	5prime_fragment	FALSE	canonical	3	112	junction_12	19.6968090236537	4	156	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77491716	77351701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
31473	chr11	+	1725	9	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	-2	-246	intron_retention	FALSE	canonical	3	18	junction_1	420.781100306323	1	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCTGTACTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	4823996	4843954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833422_4833496_4833725_4833772_4834021_4834117_4838879_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
31474	chr13	+	2648	12	FSM	ENSMUSG00000035762.12	ENSMUST00000223827.2	2632	12	-22	6	-4	-2	multi-exon	TRUE	canonical	0	0	junction_10	68.3415099589633	64	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAACAGAGTGTAATTTA	NA	False	NA	NA	False	NA	NA	NA	84370410	84443983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
31475	chr1	+	2354	5	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	1	-2	intron_retention	TRUE	canonical	3	3085	junction_2	996.036520414789	3	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGAACTGTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	160862733	160866100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863585_160863777_160864886_160865074_160865118_160865564_160865843_160866026
31476	chr16	+	2403	11	NNC	ENSMUSG00000008976.17	novel	2202	10	NA	NA	22	423	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	244.532288256582	1	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTGCTTGCTAACACTA	NA	False	NA	NA	False	NA	NA	NA	84631834	84658626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654261_84654461_84657262_84657314_84657519
31478	chr1	-	1276	1	Antisense	novelGene_ENSMUSG00000026615.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTAGTCCCACCACTCG	NA	False	NA	NA	False	NA	NA	NA	185114394	185113118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_185113100_185114400
31480	chr8	+	3949	21	NIC	ENSMUSG00000038604.10	novel	4108	22	NA	NA	25	-7	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	20.6815739246316	112	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAACTGTGTTTCCTAC	2667	False	NA	NA	False	NA	NA	NA	106331911	106348844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106331983_106341272_106341426_106341574_106341654_106342059_106342084_106342175_106342230_106342344_106342498_106342610_106342675_106342759_106342804_106342889_106343016_106343509_106343659_106343733_106343864_106343947_106345358_106345445_106345568_106346419_106346553_106346810_106346947_106347046_106347209_106347481_106347641_106347745_106347943_106348025_106348110_106348202_106348294_106348436
31481	chr4	+	1798	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	-20	3	-20	-3	multi-exon	FALSE	canonical	3	1917	junction_3	122.234746833023	3370	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCCCTGTTGTGGAGTTT	2849	False	NA	NA	False	NA	NA	NA	128886996	128905319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
31482	chrX	+	2160	10	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	87	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	254.849410872818	2	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAAGCCTGGCTCTTTA	6350	False	NA	NA	False	NA	NA	NA	73349005	73355461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350574_73351262_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
31483	chr11	-	3562	1	Intergenic	novelGene_2242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	80	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGTGTTGGAACAGATGT	NA	False	NA	NA	False	NA	NA	NA	30909917	30906355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_30906400_30909900
31484	chr14	+	3412	21	FSM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	40	33	4	-4	multi-exon	FALSE	canonical	3	102	junction_6	30.6031044176894	7	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGGCCTAGGCTTCTTG	4214	False	NA	NA	False	NA	NA	NA	55829204	55841117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
31485	chr1	+	3617	5	NNC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	16	110	intron_retention	FALSE	canonical	1	1	junction_4	34.8604360271067	2	56	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGAGGACAATTAAAATA	NA	False	NA	NA	False	NA	NA	NA	173248179	173289683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_173248253_173255324_173255465_173280393_173283182_173287263_173287669_173289472
31487	chr6	-	3578	6	ISM	ENSMUSG00000030352.16	ENSMUST00000112171.8	2584	9	169545	-1403	-347	-3	3prime_fragment	FALSE	canonical	3	88	junction_5	5.16139516022558	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCAGACTGTTATTTAGT	NA	False	NA	NA	False	NA	NA	NA	127944127	127938361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043
31489	chr11	-	2576	3	NNC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	351	-173	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	134	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTCAAATGTTAATGCAC	NA	False	NA	NA	False	NA	NA	NA	80032618	80027676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_80028106_80028743_80028894_80030621
31493	chr2	+	5408	35	FSM	ENSMUSG00000036833.17	ENSMUST00000045295.14	4574	35	-835	1	-835	-1	multi-exon	FALSE	canonical	3	15	junction_1	7.94602248652754	50	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTATTTTACTCT	NA	False	NA	NA	False	NA	NA	NA	24865209	24944068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_24866326_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
31494	chr2	-	4511	13	NNC	ENSMUSG00000041219.15	novel	4958	12	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	141.438713661509	1	153	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAACGTCTTGTCTGCGT	5995	False	NA	NA	False	NA	NA	NA	113679023	113661842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_113662635_113663144_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670026_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
31495	chr15	-	2380	14	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	398	-14	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	2102.08407997633	1	111	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCCTTAAACAGTAGATGG	775	False	NA	NA	False	NA	NA	NA	36608819	36595918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596993_36597685_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605687_36605802_36605987_36606182_36608557
31496	chr19	+	2262	9	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	152.751227490976	5	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	38043422	38062871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048775_38051061_38051120_38057527_38057679_38058087_38058289_38060231_38060339_38061745
31497	chr11	+	1895	13	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-1	182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1491.74911085015	1	76	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATATTAACTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	22940648	22953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940881_22944256_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
31499	chr12	-	2779	17	NIC	ENSMUSG00000021240.7	novel	2581	19	NA	NA	-13	-8	intron_retention	FALSE	canonical	3	128	junction_16	38.7451105786266	1	83	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84664157	84649434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
31500	chr14	+	1528	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	16	29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	669.287535783803	23	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTCTTTTGAG	1702	False	NA	NA	False	NA	NA	NA	26359244	26377998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050_26377370_26377575
31501	chr2	+	2674	8	NIC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	0	4	intron_retention	FALSE	canonical	3	607	junction_1	62.5583808966326	15	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGACTTGGGGGTTTTTTT	1973	False	NA	NA	False	NA	NA	NA	5850100	5873551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5867220_5868389_5868486_5869157_5869260_5871043_5871219_5872899
31502	chr5	-	2351	14	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCCCGGAACGTCGTCC	NA	False	NA	NA	False	NA	NA	NA	33829532	33815941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816069_33818562_33818728_33818861_33818990_33821164_33821246_33821610_33822198_33824034_33824086_33824401_33824510_33825304_33825400_33825490_33825587_33826011_33826080_33826161_33826205_33826820_33826990_33828745_33828855_33829008
31503	chr11	-	3635	21	NNC	ENSMUSG00000085262.2	novel	946	3	NA	NA	-17107	-2084	intron_retention	FALSE	non_canonical	0	0	junction_1	0	9	70	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCCTCCTCCCGCCAAG	9346	False	NA	NA	False	NA	NA	NA	96959365	96941600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96941784_96943050_96943205_96943312_96943436_96943593_96943650_96944940_96945049_96945372_96945470_96945582_96945702_96946351_96946454_96946677_96946771_96946857_96946989_96947077_96947174_96947353_96947448_96949283_96949422_96949922_96950017_96950606_96950785_96950867_96951115_96951274_96951422_96956593_96956683_96957755_96957902_96958025_96958395_96958494
31504	chr13	-	5794	10	Antisense	novelGene_ENSMUSG00000039087.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGGAGTTCCCACCTCA	NA	False	NA	NA	False	NA	NA	NA	38117998	38009840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_38010028_38072845_38072946_38076524_38076633_38077745_38077959_38082385_38082475_38083596_38083762_38099995_38100134_38100431_38100567_38112094_38112285_38113529
31505	chr3	+	420	3	NNC	ENSMUSG00000027820.13	novel	615	6	NA	NA	-68	-80314	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	32.5	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTGTAAGAGTTGCCT	NA	False	NA	-59	True	NA	NA	NA	63148889	63154933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63148988_63150636_63150788_63154762
31506	chr18	-	1424	4	Intergenic	novelGene_4531	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCCGCCGCCTCCCTTCT	NA	False	NA	NA	False	NA	NA	NA	35750239	35731720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_35731812_35743922_35744088_35746375_35746555_35749250
31507	chr10	+	4199	10	NNC	ENSMUSG00000019920.19	novel	4327	10	NA	NA	112	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	88.3328441635652	1	167	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTATTCATAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	58159399	58260500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_58159510_58234842_58235003_58243891_58243956_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
31508	chr17	-	2933	7	NIC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_6	192.900377282046	554	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	NA	False	NA	NA	NA	28637488	28618070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637368
31509	chr11	+	1437	9	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	1204.47301106127	134	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATAACACATTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	9068548	9086159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068868_9069373_9069478_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
31510	chr3	-	2167	15	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	-23	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	117.112191108024	1	55	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGATATTTTTCATATGG	NA	False	NA	NA	False	NA	NA	NA	95763116	95737926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95758999_95763053
31511	chr17	-	1830	7	NNC	ENSMUSG00000024026.14	novel	2024	7	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1204.05135549389	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTCTGGGCAGCAAGT	NA	False	NA	NA	False	NA	NA	NA	30831596	30811838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30812620_30812688_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
31513	chr18	+	2389	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	0	5	0	-5	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	1055	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCGGTCTTGCCCTTGA	3967	False	NA	NA	False	NA	NA	NA	38383311	38395677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
31515	chrX	+	3913	3	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	8359	-4	8076	4	3prime_fragment	FALSE	canonical	3	487	junction_1	7.5	11	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGAGTTAACTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	56107333	56112547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_56109567_56110365_56110504_56111005
31516	chr18	-	5013	11	Antisense	novelGene_ENSMUSG00000089908.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGGCGTGGAGCCGGGG	NA	False	NA	NA	False	NA	NA	NA	25600036	25302072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_25302144_25307743_25307778_25308397_25308541_25315109_25315205_25336915_25337034_25422995_25423122_25472768_25473440_25477918_25478018_25532980_25533163_25553021_25553131_25596671
31517	chr11	-	3406	6	FSM	ENSMUSG00000000120.7	ENSMUST00000000122.7	3446	6	37	3	37	-3	multi-exon	FALSE	canonical	3	62	junction_2	5.88557558782486	181	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAACGATGCCAAGAG	NA	False	NA	NA	False	NA	NA	NA	95478524	95459646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
31519	chr9	+	5258	26	NNC	ENSMUSG00000032558.20	novel	5899	27	NA	NA	1947	-27	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	6.81363339195763	41	25	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAACATGTTTCAGCAG	NA	False	NA	NA	False	NA	NA	NA	103881912	103920990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_103882039_103882654_103882806_103885319_103885473_103886336_103886473_103888799_103888961_103892523_103892681_103893278_103893354_103895301_103895476_103897924_103898029_103898454_103898570_103899860_103900005_103900618_103900717_103901780_103901884_103903100_103903184_103907160_103907300_103909089_103909255_103910526_103910622_103911576_103911700_103912904_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
31520	chr10	+	2191	14	NNC	ENSMUSG00000004207.15	novel	2564	14	NA	NA	7137	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	374.212024196517	2	76	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	1280	False	NA	NA	False	NA	NA	NA	60127419	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60127555_60128284_60128360_60129128_60129267_60130378_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60137791_60138040
31522	chr12	-	1257	2	Genic_Genomic	ENSMUSG00000066632.4	novel	1255	1	NA	NA	-73	421	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAATCTTCCATC	NA	False	NA	NA	False	NA	NA	NA	10950313	10948564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_10949657_10950148
31523	chr17	-	723	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	93	942	93	-4	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCATTTTCTTACACT	NA	False	NA	NA	False	NA	NA	NA	15718467	15696224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
31524	chr1	+	1722	5	NNC	ENSMUSG00000053332.14	novel	872	9	NA	NA	-270	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	2361.51995545242	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGAACTGTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	160863319	160866100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863585_160863777_160864150_160864389_160865118_160865564_160865702_160865880
31525	chr14	-	3596	19	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	0	-7205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	116.27942346343	117	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTGTGGTTTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	62998587	62930457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614_62997693_62997996_62998247_62998357
31526	chr8	+	3193	15	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-669	3	intron_retention	FALSE	canonical	3	310	junction_11	29.104316251886	2	105	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACCAGGGCTCACCTCAT	5678	False	NA	NA	False	NA	NA	NA	3682245	3692791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3685531_3685615_3685747_3685831_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
31527	chr9	+	2564	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	30	2700	30	1560	multi-exon	FALSE	canonical	3	211	junction_6	53.7134601610168	540	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGTCTGCTAATGTGT	9244	False	NA	NA	False	NA	NA	NA	63509971	63549170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
31528	chr10	+	695	1	ISM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	32645	0	32386	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	NA	False	NA	NA	NA	42410671	42411366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_42410700_42411400
31529	chr14	-	2021	14	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	6	-8	intron_retention	FALSE	canonical	3	775	junction_9	81.51088067638	2	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCATGTGTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	30740964	30734398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
31530	chr19	-	2090	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	56	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1087.72606845658	1	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902367	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883497_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
31533	chr15	+	1539	4	Antisense	novelGene_ENSMUSG00000072235.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	53	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGCGACTCTTAGGCGGT	NA	False	NA	NA	False	NA	NA	NA	98847720	98851394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98848890_98849133_98849218_98849349_98849575_98851333
31536	chr6	+	2148	2	Genic_Genomic	ENSMUSG00000037827.6	novel	1479	1	NA	NA	-55	715	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACAAGGACT	NA	False	NA	NA	False	NA	NA	NA	128621820	128624069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_128623224_128623324
31537	chr6	+	2517	20	Intergenic	novelGene_4160	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	126	28	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGCCGCCGCCGGGACTC	NA	False	NA	NA	False	NA	NA	NA	47507207	47571888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517788_47518776_47518909_47519302_47519343_47520880_47520978_47521375_47521548_47522652_47522853_47524281_47524373_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533083_47535109_47535234_47553498_47553599_47554477_47554602_47571827
31538	chr15	+	2034	1	FSM	ENSMUSG00000077737.3	ENSMUST00000104549.3	81	1	-1759	-194	-1759	194	mono-exon	FALSE	NA	NA	NA	NA	NA	110	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2248	False	NA	NA	False	NA	NA	NA	5146126	5148160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_5146100_5148200
31539	chr5	+	2558	13	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	8	1	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_5	57.0079794609686	206	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGAGTCCCACAGGGTC	4	True	NA	NA	False	NA	NA	NA	120649240	120672090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
31540	chr5	-	2776	6	NNC	ENSMUSG00000029213.12	novel	3360	6	NA	NA	9	3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	166.356965589061	4	43	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGCTTGATTTCAGT	NA	False	NA	NA	False	NA	NA	NA	72325523	72316350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_72317237_72318250_72319630_72320064_72320218_72322097_72322198_72322693_72322850_72325421
31541	chr6	-	1926	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	77	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	898.309046407272	1	80	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294458	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286459_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
31543	chr5	-	1590	10	ISM	ENSMUSG00000029703.11	ENSMUST00000148475.8	2339	11	1308	579	-837	-579	3prime_fragment	FALSE	canonical	3	342	junction_4	25.0973413574003	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGGTTTTGGTTTTGTT	8044	False	NA	NA	False	NA	NA	NA	136163568	136158833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352
31545	chr9	+	1661	5	NIC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	20050	-9	intron_retention	FALSE	canonical	3	999	junction_3	44.5105324614298	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCCTAGTGACTCTGAG	2369	False	NA	NA	False	NA	NA	NA	45301789	45307444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
31546	chr8	-	1822	8	Antisense	novelGene_ENSMUSG00000031770.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGAGACCACACAACGAC	NA	False	NA	NA	False	NA	NA	NA	95121968	95113160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_95113366_95115982_95116059_95116143_95116222_95117343_95117475_95118357_95118483_95118801_95119153_95120423_95120528_95121216
31547	chr4	-	424	4	NNC	ENSMUSG00000040842.18	novel	3244	4	NA	NA	3	745	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	93.4915325934208	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTGATCAGACAGCCGTT	NA	False	NA	NA	False	NA	NA	NA	140867074	140843132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_140843176_140843847_140843902_140845837_140846093_140867002
31548	chr9	-	2341	10	NIC	ENSMUSG00000032316.9	novel	2363	12	NA	NA	9	-4	intron_retention	FALSE	canonical	3	36	junction_7	100.304105500458	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAACCCCCTGGTACCA	9834	False	NA	NA	False	NA	NA	NA	57672377	57657998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
31549	chr12	-	3417	22	Antisense	novelGene_ENSMUSG00000021111.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	152	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCCTAACATGGCGCCCG	NA	False	NA	NA	False	NA	NA	NA	105804160	105751003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_105751175_105765913_105766082_105766940_105767008_105771183_105771265_105772742_105772855_105773421_105773476_105774811_105774925_105775600_105775679_105775769_105775915_105777292_105777368_105778531_105778652_105779454_105779537_105784611_105784668_105785037_105785157_105786597_105786708_105789812_105789935_105793200_105793345_105794538_105794639_105795314_105795535_105799356_105799420_105800966_105801047_105803023
31550	chr11	-	1224	6	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-5	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8388.86127194865	15	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACACATTTGTTAAAAAT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808097_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
31551	chr7	+	783	1	NIC	ENSMUSG00000040952.17	novel	774	6	NA	NA	271	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCATTCATAATCCTGGT	912	False	NA	NA	False	NA	NA	NA	24588435	24589218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_24588400_24589200
31552	chr10	+	3030	5	NNC	ENSMUSG00000060935.7	novel	1200	4	NA	NA	226	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	91.1345159640408	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAATGTTTCATAAAGA	NA	False	NA	NA	False	NA	NA	NA	84938832	84953450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_84938862_84946662_84946730_84950271_84950406_84950518_84951305_84951436
31553	chr15	-	2097	1	Genic_Genomic	ENSMUSG00000053411.17	novel	NA	NA	NA	NA	14619	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTCTGGTTGTTTGTT	2626	False	NA	NA	False	NA	NA	NA	79802098	79800001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_79800000_79802100
31554	chr17	+	3244	18	NIC	ENSMUSG00000024319.19	novel	3383	20	NA	NA	128	499	intron_retention	FALSE	canonical	2	228	junction_9	32.0626549248569	19	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGTACTAACAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	34175046	34185446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
31555	chr6	+	2215	17	NNC	ENSMUSG00000029777.11	novel	2380	17	NA	NA	62	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	990.165421785673	1388	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAATCCATCTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	55015053	55056478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_55015123_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045153_55046324_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
31556	chr13	-	922	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	569	-149	569	149	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAGAAAAGAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	112731049	112730127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112730100_112731000
31557	chr4	+	1633	2	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	15769	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	0	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	706	False	NA	NA	False	NA	NA	NA	128902914	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128903581_128904355
31558	chr1	-	2809	11	NNC	ENSMUSG00000009907.18	novel	4539	12	NA	NA	0	-1728	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	158.821944327602	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTGGCTTTTATATGTT	85	False	NA	NA	False	NA	NA	NA	106724397	106698887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_106700279_106701736_106701878_106704999_106705185_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
31559	chr5	+	980	5	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1823	2693	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCACCGCCCTCTAAAGT	675	False	NA	NA	False	NA	NA	NA	138162861	138165601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165027_138165305
31560	chr15	+	2510	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	-135	0	0	0	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	384	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGTAACTGGCCAAACG	4398	False	NA	NA	False	NA	NA	NA	78783967	78796247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
31561	chr1	+	1991	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	6	1	-5	0	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	499	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097903	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
31562	SIRV1	-	1562	6	FSM	SIRV1A	SIRV101	1561	6	-1	0	-1	0	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10787	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
31563	chr6	+	2161	8	NNC	ENSMUSG00000000439.10	novel	6230	8	NA	NA	21	-3938	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	175.036206167146	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTATTCCTGGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	115578942	115595647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590338_115590503_115591535_115591647_115594258_115594404_115594554
31564	chr2	-	4461	23	FSM	ENSMUSG00000044033.17	ENSMUST00000049544.14	8969	23	-1	4509	0	640	multi-exon	TRUE	canonical	3	17	junction_11	5.83396297270922	29	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTACACTGACATGGTG	NA	False	NA	NA	False	NA	NA	NA	77000980	76844754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
31565	chr14	-	3254	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	446	4	-112	-4	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	742	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTAAATCTGTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79718514	79697380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
31567	chr2	-	2345	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	377	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.87944707988	36	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCTAAGAATGGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	165703548	165669051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165703460
31568	chr7	+	3533	22	Antisense	novelGene_ENSMUSG00000063550.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGGCGCAGCGCGCAGAG	NA	False	NA	NA	False	NA	NA	NA	101783790	101859329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_101784201_101787938_101788093_101788674_101788858_101794763_101794925_101796401_101796587_101801526_101801663_101802341_101802456_101803000_101803301_101806258_101806376_101809747_101809936_101812895_101813027_101825517_101825612_101829582_101829723_101832669_101832807_101834011_101834176_101835066_101835248_101835837_101835947_101841109_101841252_101843868_101844044_101844154_101844258_101844991_101845098_101859226
31569	chr3	-	3083	7	Antisense	novelGene_ENSMUSG00000106262.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	144	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCACACTCGGGCACGCAC	1182	False	NA	NA	False	NA	NA	NA	95854692	95836703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95836972_95841261_95841366_95842085_95842208_95844332_95844507_95845192_95845350_95851616_95851673_95852490
31570	chr14	-	2094	19	FSM	ENSMUSG00000022040.9	ENSMUST00000070515.2	2035	19	-62	3	-62	-3	multi-exon	FALSE	canonical	3	171	junction_15	18.7001188350354	427	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCCAGTTTCTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	66362011	66321828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
31573	chr1	+	2386	10	NIC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	12	0	intron_retention	FALSE	canonical	0	0	junction_7	220.241674216594	6	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	42890456	42944843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937400_42938710_42942454_42942625_42944564
31574	chr4	+	2793	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	49	172	49	-172	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	1	111	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATACTTGTATCTATATAA	5321	False	NA	NA	False	NA	NA	NA	108436699	108471858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
31575	chr2	-	3567	20	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-61	-59	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_16	45.1468517966293	25	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAATTCATTCTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	71197938	71105092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71159421_71160375_71163948_71164065_71174233_71174377_71196870_71196925_71197856
31576	chr7	-	1870	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	172	85	-9	-79	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	3	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCCTCTGCTGCCCTCAT	8856	False	NA	NA	False	NA	NA	NA	141941603	141929732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
31577	chr16	-	1952	18	NIC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	2	-8	intron_retention	FALSE	canonical	3	368	junction_6	54.5774583682468	107	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTATCCCCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	18630374	18599210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
31578	chr1	-	3444	2	ISM	ENSMUSG00000058407.13	ENSMUST00000194747.2	2605	4	19	5099	19	-2237	5prime_fragment	FALSE	canonical	3	765	junction_1	0	2	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGTGGGTTATAATTCTC	NA	False	NA	NA	False	NA	NA	NA	38036286	38031575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_38034923_38036189
31579	chr1	-	873	1	Intergenic	novelGene_359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCTGACTCACCTGC	NA	False	NA	NA	False	NA	NA	NA	38031196	38030323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_38030300_38031200
31580	chr10	+	1478	8	Antisense	novelGene_ENSMUSG00000036112.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGAAATACACCATTAGGA	5684	False	NA	NA	False	NA	NA	NA	93696779	93715438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_93697464_93698237_93698354_93698790_93698898_93701270_93701366_93704728_93704822_93705976_93706164_93707352_93707511_93715400
31581	chr7	-	1793	10	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	974.506598803267	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTTGCTTGTCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	16121716	16060978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16061080_16061163_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
31582	chr3	-	1623	2	Genic_Genomic	ENSMUSG00000069008.4	novel	1252	1	NA	NA	-44	433	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATTCTCACCTAAG	NA	False	NA	NA	False	NA	NA	NA	58011712	58009983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_58011066_58011171
31583	chrX	+	4405	30	NNC	ENSMUSG00000025862.15	novel	5825	33	NA	NA	-15	-1001	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_14	46.4308264077185	4	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTGCTGATTTTATAATT	NA	False	NA	NA	False	NA	NA	NA	41239562	41365051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_41239712_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323630_41336851_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
31584	chr8	-	3140	2	ISM	ENSMUSG00000031843.3	ENSMUST00000211818.2	887	3	2769	-2327	2769	-2	3prime_fragment	FALSE	canonical	3	698	junction_1	0	6	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACACTTTGAAGTAATTTT	NA	False	NA	-48	True	NA	NA	NA	118525897	118518385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_118521411_118525782
31585	chr16	-	1692	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	32	85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2025.2969510163	2	52	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTGGTACAATAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	87292644	87280790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283486_87283550_87284421_87284596_87285690_87285833_87287208_87287271_87287375_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
31587	chr6	-	2569	15	FSM	ENSMUSG00000003500.14	ENSMUST00000159124.8	2600	15	27	4	5	-3	multi-exon	FALSE	canonical	1	64	junction_14	59.8544152123146	79	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTCTGTGATCCTGTTT	12	False	NA	NA	False	NA	NA	NA	29216336	29200439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212167_29216070
31589	chr6	+	1500	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	269	6	269	-6	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	2742	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGACATTTGCTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	145561751	145567199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
31590	chr11	-	3725	19	FSM	ENSMUSG00000057897.15	ENSMUST00000002817.12	1872	19	148	-2001	-12	1	multi-exon	FALSE	canonical	3	94	junction_4	16.5324223165972	75	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	3028	False	NA	NA	False	NA	NA	NA	6015594	5919670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
31592	chr9	+	3492	21	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	11	-19	intron_retention	FALSE	canonical	3	79	junction_1	42.6432878657357	1	85	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTGCCTCTTGTACAGA	6641	False	NA	NA	False	NA	NA	NA	21232054	21266302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
31593	chr7	+	2597	11	FSM	ENSMUSG00000025487.16	ENSMUST00000151644.8	1391	11	-476	-730	-30	0	multi-exon	FALSE	canonical	3	1065	junction_10	119.9970416302	57	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	140461850	140478555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329
31594	chr13	-	1067	11	ISM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	48	3069	10	40	5prime_fragment	FALSE	canonical	3	1429	junction_10	1843.09127283485	3	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTTTGATTTATAAGG	5174	False	NA	NA	False	NA	NA	NA	58549907	58542121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
31595	chr11	-	2666	15	ISM	ENSMUSG00000020929.15	ENSMUST00000173679.8	2889	27	25254	-328	-4481	0	3prime_fragment	FALSE	canonical	3	1277	junction_11	93.9070317507954	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	102743286	102729298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582
31596	chr6	-	1587	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	46	28	-4	-28	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAAAGAGGGGAATGTG	NA	False	NA	NA	False	NA	NA	NA	87828016	87820091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
31597	chr5	-	2892	9	NNC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	-1473	-1312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	133.136149767822	1	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGCAGCTAATTTATTA	NA	False	NA	NA	False	NA	NA	NA	74197775	74160698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74161352_74161419_74162801_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193089_74197709
31598	chr6	-	2814	12	NNC	ENSMUSG00000030177.15	novel	1887	12	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_11	78.8812267518977	23	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTCAGGGCTCTACAAAG	NA	False	NA	NA	False	NA	NA	NA	120334308	120301285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120333945
31600	chr1	+	3174	21	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	8	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	767.159584115326	1	139	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAAACAGCCAGGGTAAT	NA	False	NA	NA	False	NA	NA	NA	185095262	185160511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111109_185111748_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139820_185160379
31602	chr2	-	2526	6	NNC	ENSMUSG00000036160.14	novel	2971	5	NA	NA	3	-33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	118.934267559858	10	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCGATTTGACAAATTACA	NA	False	NA	NA	False	NA	NA	NA	26792888	26780816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26781824_26781895_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
31603	chr1	-	2308	6	NNC	ENSMUSG00000026095.16	novel	2442	6	NA	NA	51	-5	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	231.068820917059	32	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTACTGTGGGGTGTAG	NA	False	NA	NA	False	NA	NA	NA	53391860	53383808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53384089_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
31605	chr5	-	1650	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.5	36	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135963453	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135937971_135939840_135940506_135963176
31606	chr2	-	2775	4	FSM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	82	1	3	-1	multi-exon	FALSE	canonical	3	157	junction_1	14.3527000944073	9	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCTGTATATTAGATATT	NA	False	NA	NA	False	NA	NA	NA	37249262	37240086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37249154
31607	chr11	+	3299	6	NNC	ENSMUSG00000085154.8	novel	727	3	NA	NA	-20872	-5082	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	957	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACTGACGTCAGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	103567677	103588760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_103570223_103574616_103574761_103577409_103577541_103578350_103578460_103580080_103580145_103588454
31608	chrX	-	1943	11	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	615.048290786992	272	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCACATGCTTGTGTGCG	NA	False	NA	NA	False	NA	NA	NA	72974446	72965734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72970308_72971229_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
31609	chr4	+	2383	11	NNC	ENSMUSG00000066037.15	novel	2683	11	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	263.577711500802	5	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTATTTCAAATTCAAT	NA	False	NA	NA	False	NA	NA	NA	136038325	136067989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_136038401_136043671_136043791_136044394_136044503_136046704_136046819_136049250_136049303_136054546_136054689_136056676_136056808_136059804_136059915_136063608_136063759_136066486_136066609_136066729
31610	chr17	+	3117	6	Genic_Genomic	ENSMUSG00000073448.4_ENSMUSG00000067929.4	novel	842	1	NA	NA	-10184	559	multi-exon	FALSE	canonical	0	0	junction_2	18.3847763108502	27	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTTTGTGAGCACCAT	NA	False	NA	NA	False	NA	NA	NA	21898903	21911580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_21899118_21900041_21900185_21900505_21900595_21904941_21905026_21906708_21906836_21909120
31611	chr8	+	2462	15	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	-27	-4	intron_retention	FALSE	canonical	3	466	junction_6	50.7506911584584	13	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCTGGTTGTCATTTTG	NA	False	NA	NA	False	NA	NA	NA	85416065	85426410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
31612	chr2	+	2571	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	221	20	221	-20	multi-exon	FALSE	canonical	3	134	junction_1	0	226	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACCATGCAATAGCCTTA	NA	False	NA	NA	False	NA	NA	NA	151947664	151953276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_151947868_151950908
31615	chr8	-	2203	15	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	4507	-1605	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	381.364046174106	1	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTAAGTGAAATTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	86021585	85988625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014447_86016334_86016432_86021487
31616	chr11	-	2001	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	18	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6404	False	NA	NA	False	NA	NA	NA	102076074	102053322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054686_102054892_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
31617	chr13	+	2573	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	-9	1	-9	-1	multi-exon	TRUE	canonical	3	76	junction_1	23.5189049253763	365	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTATTTCATTTCTTAC	NA	False	NA	NA	False	NA	NA	NA	119599294	119622652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
31618	chr11	+	3251	1	ISM	ENSMUSG00000038437.12	ENSMUST00000044730.12	7274	20	18784	15	6146	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	128	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAATCCAAAGAGACCT	NA	False	NA	NA	False	NA	NA	NA	97573023	97576274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97573000_97576300
31619	chr4	+	2533	16	NNC	ENSMUSG00000011257.20	novel	3050	15	NA	NA	-39	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.391741937831	684	20	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAATTTGATGCCAGTTT	NA	False	NA	-66	True	NA	NA	NA	123176578	123192619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_123176843_123177399_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189067_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
31622	chr13	+	2959	26	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	22150	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	149.802771669953	2	101	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTGTGAATCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	18923609	19050969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030105_19033055_19033194_19036510_19036566_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
31623	chr12	-	1548	2	ISM	ENSMUSG00000056459.15	ENSMUST00000176102.8	2707	3	1071	1125	1071	-7	3prime_fragment	FALSE	canonical	3	84	junction_1	0	87	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAGAAGTTAATGTAGA	NA	False	NA	NA	False	NA	NA	NA	76402843	76395680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_76397048_76402662
31624	chr11	+	3104	23	NNC	ENSMUSG00000020527.15	novel	3644	23	NA	NA	4	-502	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	46.6752673105618	1	75	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGCCAAGCTATTCCCAC	NA	False	NA	NA	False	NA	NA	NA	84771182	84801446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778904_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
31625	chr13	+	3342	5	FSM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	7	15	7	-15	multi-exon	FALSE	canonical	3	349	junction_1	23.636571240347	313	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGTAGAACAGGCGTTT	NA	False	NA	NA	False	NA	NA	NA	113931047	114293982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117_114104327_114291239
31626	chr7	+	2239	17	FSM	ENSMUSG00000001829.18	ENSMUST00000106998.8	2287	17	46	2	-6	-2	multi-exon	FALSE	canonical	2	6	junction_4	246.748226943984	47	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAATCCACCTTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	101312957	101437015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101360617_101360708_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
31627	chr14	+	4636	8	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	-738	-491	intron_retention	FALSE	canonical	2	20	junction_3	289.163325080185	10	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACAGAAACTTGCCTCTT	NA	False	NA	-11	True	NA	NA	NA	62584009	62609950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_62587926_62590971_62591087_62597911_62598063_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
31628	chr13	+	2654	13	FSM	ENSMUSG00000062822.9	ENSMUST00000225726.2	2795	13	141	0	133	0	multi-exon	FALSE	canonical	2	4	junction_6	37.4584955502605	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119599452	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610731_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
31629	chr6	-	1488	2	Genic_Genomic	ENSMUSG00000096403.3	novel	843	1	NA	NA	-55	712	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	-4	True	NA	NA	False	NA	NA	NA	7983438	7981828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_7983073_7983194
31631	chr3	-	2119	14	NNC	ENSMUSG00000042520.17	novel	3629	25	NA	NA	401	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	312.683820492256	6	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTTCTTTCCGTGCA	8124	False	NA	NA	False	NA	NA	NA	89955205	89913523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928724_89955076
31632	chr2	-	3117	19	NNC	ENSMUSG00000027014.15	novel	3388	20	NA	NA	65	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.8808064865972	8	130	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	NA	NA	NA	77776632	77726109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_77726917_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77754438_77754538_77754830_77755000_77757547_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
31633	chr15	-	1605	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	132	6	5	-6	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTTTGTTTCTGGATA	163	False	NA	NA	False	NA	NA	NA	98832314	98829311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
31634	chr4	-	2321	9	NIC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	1430	junction_5	130.355283744082	90	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTCCTCGGTCATCTGC	NA	False	NA	NA	False	NA	NA	NA	124830713	124812260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
31636	chr4	-	559	5	Intergenic	novelGene_2146	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	793	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAATGCTGGGACGACTGA	NA	False	NA	NA	False	NA	NA	NA	147666757	147576866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147577009_147641551_147641683_147661526_147661585_147665696_147665825_147666657
31637	chr6	+	1335	5	Antisense	novelGene_ENSMUSG00000002870.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGATTAAGAGGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	88860462	88864057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_88861085_88861350_88861516_88861665_88861846_88862824_88863077_88863941
31638	chr2	-	2467	5	Antisense	novelGene_ENSMUSG00000078906.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	92	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGAGGAAGTTGCTGGC	NA	False	NA	NA	False	NA	NA	NA	174862081	174852020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_174852114_174855219_174855275_174858429_174858555_174858746_174858809_174859949
31640	chr11	+	2635	18	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	2	-17	intron_retention	FALSE	non_canonical	0	0	junction_3	248.232589893271	2	84	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTTTGCAAATATAAGAC	NA	False	NA	NA	False	NA	NA	NA	115455352	115474715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115456074_115457426_115457590_115459188_115459271_115459512_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
31642	chr7	+	2965	15	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	288.475240333922	1	135	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTTTTGTCTTCAATG	NA	False	NA	NA	False	NA	NA	NA	79944222	79966006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
31643	SIRV3	+	1517	1	ISM	SIRV3A	SIRV301	2467	5	4361	1117	2302	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	6305	7822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV3_+_6300_7800
31645	chr14	+	1438	1	Antisense	novelGene_ENSMUSG00000068245.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCACACTCCACCAGTC	NA	False	NA	NA	False	NA	NA	NA	59595561	59596999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_59595600_59597000
31646	chr14	-	1660	14	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	326.340911521287	2	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTTAAGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	30740966	30734390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736099_30736845_30736984_30737231_30737342_30738278_30738412_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
31647	chr1	+	4380	8	NNC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	6	-7	intron_retention	FALSE	canonical	1	1	junction_1	43.944306125098	2	117	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTGTGTGTACT	82	False	NA	NA	False	NA	NA	NA	75168841	75176024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75169267_75170821_75170929_75171484_75171588_75171706_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
31648	chr10	-	2357	15	ISM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	50096	1507	473	-15	3prime_fragment	FALSE	canonical	3	429	junction_9	51.7022480070218	1	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTTTTGATGAATTATG	3721	False	NA	NA	False	NA	NA	NA	122982762	122949147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698
31649	chr1	+	2725	11	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	735	-801	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	522.662309718235	1	163	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTTATAGATCAGTCTT	1964	False	NA	-51	True	NA	NA	NA	58433363	58445711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442141_58442749_58442913_58443390_58443514_58444193
31650	chr6	+	560	1	Antisense	novelGene_ENSMUSG00000030057.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGGCCGTCATTATGCT	9086	False	NA	NA	False	NA	NA	NA	87820060	87820620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_87820100_87820600
31651	chr5	-	2367	10	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-62	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	190.607799770454	5	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATTTTCCACTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	34093656	34055262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059197_34077831_34077998_34079189_34079362_34093369
31652	chr1	-	1678	9	FSM	ENSMUSG00000038776.14	ENSMUST00000036928.12	1741	9	37	26	37	-26	multi-exon	FALSE	canonical	3	106	junction_5	19.7214984217731	351	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATAAATGGGTTTATTT	5765	False	NA	NA	False	NA	NA	NA	180845097	180817144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180821653_180822192_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
31653	chr15	+	3240	13	FSM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	-13	2	-13	-2	multi-exon	FALSE	canonical	3	67	junction_12	8.71779788708135	147	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTCTTTTTATTGCA	NA	False	NA	NA	False	NA	NA	NA	86098646	86382702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
31655	chr7	-	3940	4	NIC	ENSMUSG00000030881.16	novel	1141	8	NA	NA	69	0	intron_retention	FALSE	canonical	3	37	junction_2	43.8254111979188	2	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCCCAGTGAGGTCAAT	NA	False	NA	NA	False	NA	NA	NA	105289446	105284830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105286193_105286327_105286486_105286858_105287248_105287415
31656	chr10	-	2591	11	NIC	ENSMUSG00000039480.15	novel	2743	12	NA	NA	-21	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	29.121984822467	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGATGTTTGTATTATTG	NA	False	NA	NA	False	NA	NA	NA	34294569	34179608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_34180976_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
31658	chr18	-	1679	12	ISM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	6202	704	-31	149	3prime_fragment	FALSE	canonical	3	5978	junction_5	265.904102517312	1	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTCTGTCACTAGCCT	6401	False	NA	NA	False	NA	NA	NA	35081208	35071170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158
31659	chr17	-	1717	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	600	3	8	1	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34249994	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
31661	chr1	-	2375	13	NNC	ENSMUSG00000026209.16	novel	1571	15	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_12	267.740961046722	12	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	75294051	75285208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293976
31663	chr18	+	2538	14	NNC	ENSMUSG00000037236.17	novel	3107	15	NA	NA	-346	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	430.052122890199	1	80	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTACTGAAGTGAATACC	7391	False	NA	NA	False	NA	NA	NA	35710607	35724439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714654_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720788_35720832_35720907_35721384_35721507_35723432
31664	chr7	-	2709	7	NIC	ENSMUSG00000040511.15	novel	2905	8	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	43.4961684136277	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	9975	False	NA	NA	False	NA	NA	NA	19655041	19637502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_19639118_19639703_19639739_19643105_19643229_19648662_19648790_19650798_19651096_19652486_19652835_19654877
31665	chr5	-	4211	2	Genic_Genomic	ENSMUSG00000107292.2	novel	519	1	NA	NA	-1724	3861	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAATTATGCTACAAGTC	NA	False	NA	NA	False	NA	NA	NA	73467644	73461540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_73462027_73463919
31666	chr6	+	3511	12	FSM	ENSMUSG00000029863.14	ENSMUST00000156829.8	1439	12	-72	-2000	-8	-16	multi-exon	FALSE	canonical	3	27	junction_8	34.7888554397801	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACTTATTACTGATTTT	NA	False	NA	NA	False	NA	NA	NA	42241981	42259426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246213_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017_42257128_42257279
31667	chr6	-	2288	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	20	-51	20	51	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTTTAAATGTTTACCA	NA	False	NA	NA	False	NA	NA	NA	97182588	97160916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
31668	chr10	+	2013	11	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	-5	36	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	1208.69131294967	172	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCACACTGGCGTCGGTA	2116	False	NA	NA	False	NA	NA	NA	61484394	61509983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61508920
31669	chr2	+	2665	17	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	9	-1602	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	265.64831515323	1	104	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATTTGTTTCAGAACAA	7241	False	NA	NA	False	NA	NA	NA	23046548	23087670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073346_23076219_23076343_23076877_23076927_23082430_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
31670	chr12	-	3204	15	ISM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	57130	4915	-7175	-4915	internal_fragment	FALSE	canonical	3	48	junction_14	29.843469186092	11	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAGCCCAAACCCCCAGC	NA	False	NA	NA	False	NA	NA	NA	51819189	51795419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056
31672	chr11	-	2178	12	NNC	ENSMUSG00000018593.14	novel	1304	12	NA	NA	-1041	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	335.62826248472	4	40	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCCTGTCCCGGGTGATG	2390	False	NA	NA	False	NA	NA	NA	55312192	55285326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289466_55290013_55290152_55292776_55292808_55296000_55296128_55297335_55297409_55298034_55298106_55300753_55300824_55310613_55310682_55310904_55311027_55312068
31673	chr2	-	258	1	Intergenic	novelGene_2789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10350	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACTTTTAATAGATTT	NA	False	NA	NA	False	NA	NA	NA	168153071	168152813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_168152800_168153100
31674	chrX	-	3216	6	FSM	ENSMUSG00000031399.16	ENSMUST00000114138.8	507	6	-540	-2169	28	18	multi-exon	FALSE	canonical	3	109	junction_3	12.8156154748806	12	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTGTATTCAGATGTC	NA	False	NA	NA	False	NA	NA	NA	73436833	73428348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
31675	chr17	+	2133	6	NIC	ENSMUSG00000007039.13	novel	1342	7	NA	NA	32	-7	intron_retention	FALSE	canonical	3	436	junction_2	25.772853935876	145	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAGATAAGGGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	35278042	35281060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
31677	chr8	-	3968	6	NNC	ENSMUSG00000019731.14	novel	4383	6	NA	NA	13	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	101.43648258886	143	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGGTTGGAGTTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	73246048	73234488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73237838_73238504_73238751_73241964_73242091_73243295_73243434_73245685_73245752_73246005
31678	chr1	+	3422	10	NIC	ENSMUSG00000026641.14	novel	2167	10	NA	NA	-6	1196	intron_retention	FALSE	canonical	3	27	junction_9	54.1255969658865	913	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACTTAATGAAGTATGAG	6731	False	NA	NA	False	NA	NA	NA	171238874	171247906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171245100_171245208_171245433_171245599_171247669_171247758
31679	chr2	+	2069	8	NNC	ENSMUSG00000070544.7	novel	3856	21	NA	NA	110	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	155.377617698408	8	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAACTTAGCGTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	160488009	160564678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_160488183_160488527_160488553_160512019_160512123_160557659_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
31680	chr17	+	3068	1	FSM	ENSMUSG00000067722.5	ENSMUST00000232784.2	3109	1	41	0	41	0	mono-exon	FALSE	NA	NA	NA	NA	NA	504	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTATGTCTCTCTGTTA	NA	False	NA	NA	False	NA	NA	NA	25403568	25406636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25403600_25406600
31684	chr19	+	1529	6	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	82	-71	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	871.364676814478	13	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTCTACAGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	47720202	47723956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47722569_47722692_47723262
31685	chr16	-	4007	16	NNC	ENSMUSG00000022843.18	novel	3511	22	NA	NA	244	2	intron_retention	FALSE	canonical	2	3	junction_7	87.1435597161374	15	103	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGCCACTCATGTATAGAA	NA	False	NA	NA	False	NA	NA	NA	20532174	20521735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526942_20527043_20527217_20527383_20528700_20529021_20529178_20529295_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532056
31686	chr6	-	5108	25	NIC	ENSMUSG00000040029.16	novel	5360	25	NA	NA	177	3	combination_of_known_junctions	TRUE	canonical	3	23	junction_24	47.3309858572819	137	52	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAACTCTGTCTGCTCTAT	NA	False	NA	NA	False	NA	NA	NA	148732747	148672185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148674308_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725955_148732661
31687	chr4	-	3957	6	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	113	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	538.208509780364	1	212	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCAAAGGATTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000012	134941287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966275_134999861
31688	chr7	-	2231	6	NNC	ENSMUSG00000070436.13	novel	2128	6	NA	NA	0	-53	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	767.807371675995	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTTCCAATGAAATGTTA	NA	False	NA	NA	False	NA	NA	NA	99002321	98994654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998828_99001030_99001075_99002259
31689	chr13	-	2142	10	ISM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	59	2087	-3	-2087	5prime_fragment	FALSE	canonical	3	2035	junction_1	149.974154151908	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATATATACTTTTAAGAAG	NA	False	NA	NA	False	NA	NA	NA	97334806	97314925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
31690	chr15	+	1482	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	31	7	-7	-7	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	4402	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAAAGCACCCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	76227753	76230453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
31691	chr7	-	3604	13	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24715	-583	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	21.5793110795194	76	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAAGCCCCAAAGCATGT	NA	False	NA	-31	True	NA	NA	NA	26410577	26365234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385816_26389739_26389834_26390877_26392411_26392894_26393053_26410317
31692	chr2	+	2104	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	-37	-4	-37	0	multi-exon	FALSE	canonical	3	40	junction_1	98.788775790685	106	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	NA	False	NA	NA	NA	32515411	32525070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32515551_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
31693	chr5	-	2541	20	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	6	-134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.765332937906	1	76	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCTAAGAGTAACCCAGA	NA	False	NA	NA	False	NA	NA	NA	30359982	30324557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324974_30325076_30325189_30325685_30325801_30326335_30326532_30327147_30327199_30327613_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347827_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
31694	chr7	+	2675	8	FSM	ENSMUSG00000030704.15	ENSMUST00000032946.10	3214	8	530	9	426	-9	multi-exon	FALSE	canonical	3	462	junction_3	112.157687827342	342	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGGCACACGGTTCACA	NA	False	NA	NA	False	NA	NA	NA	100257322	100290466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100257501_100275758_100275818_100277610_100277665_100279044_100279151_100280948_100281061_100283851_100283946_100285901_100285969_100288461
31695	chr11	+	2213	12	NNC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	40	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	217.201243470863	3	81	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCAAGCCGGCGTGTCT	NA	False	NA	NA	False	NA	NA	NA	76836604	76878201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862809_76877310
31696	chr15	-	1954	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	374	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	776.871138241149	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056419	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038314_83038417_83038911_83043006_83043127_83044300_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
31699	chr4	-	1358	8	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	21	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	365.178904994608	80	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2513	False	NA	NA	False	NA	NA	NA	129229142	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203673_129215657_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
31700	chr6	+	3003	9	ISM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	12267	25	12254	-25	intron_retention	FALSE	canonical	3	275	junction_1	24.209695888218	3	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTCAATAAAATCCATAGT	NA	False	NA	NA	False	NA	NA	NA	35166817	35182563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897
31701	chr2	-	1332	10	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	2406	-5	intron_retention	FALSE	non_canonical	0	0	junction_5	120.466685113446	1	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCCTTGGGTTTCTCTAG	NA	False	NA	NA	False	NA	NA	NA	164696310	164681442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682458_164686354_164686423_164686514_164686680_164688682_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185
31702	chr14	-	1635	8	NNC	ENSMUSG00000021273.12	novel	2860	8	NA	NA	-83	-1251	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	297.513367904087	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTCCTTGTCTTTCTCA	4224	False	NA	NA	False	NA	NA	NA	63415329	63383852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394139_63396466_63396596_63400750_63400935_63401980_63402079_63415131
31703	chr8	-	2871	7	NNC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	95.4585424848574	2	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	112660438	112638642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645497_112645589_112659991_112660162_112660259
31704	chr10	+	2372	13	NNC	ENSMUSG00000004929.13	novel	2832	13	NA	NA	-16	-348	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	156.620804457418	5	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGGGCACCCTGCCTGGT	5526	False	NA	NA	False	NA	NA	NA	80905944	80918045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80906113_80909022_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
31706	chr4	+	2765	13	NNC	ENSMUSG00000028683.15	novel	1555	12	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	244.472220644119	10	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAATAAAGAAGAATTTCCA	NA	False	NA	NA	False	NA	NA	NA	116876604	116944022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116910232_116911476_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
31707	chr9	-	1011	4	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1988	4	-20	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1892.21686565432	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	9088	False	NA	NA	False	NA	NA	NA	78387018	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905
31709	chr7	-	2950	18	NNC	ENSMUSG00000031078.16	novel	3286	18	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	395.333287625136	1	85	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	144024461	143989471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011401_144011517_144014915_144014991_144017039_144017114_144017648_144017736_144019690_144019785_144024425
31710	chr5	+	2487	13	NIC	ENSMUSG00000033773.15	novel	514	6	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	43.7876028878799	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTCAGAAGCTGACATT	NA	False	NA	NA	False	NA	NA	NA	107745826	107809706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_107746170_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
31711	chr15	+	2263	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-20	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	133.985835376851	566	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	NA	False	NA	NA	NA	100125731	100159129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100125964_100130613_100130713_100143158_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158219
31713	chr6	-	3454	12	NNC	ENSMUSG00000029790.17	novel	3522	12	NA	NA	21	2	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_10	35.1135113266382	5	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCGTTTGCTATTAATGTG	53	False	NA	NA	False	NA	NA	NA	30693654	30653453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30673309_30673409_30680129_30680194_30693635
31714	chr12	-	2506	1	Intergenic	novelGene_4433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGGGAAGCAGGGGCAA	NA	False	NA	NA	False	NA	NA	NA	86522181	86519675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_86519700_86522200
31715	chr12	-	2473	1	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGCGGGAGTCAGTTCT	NA	False	NA	NA	False	NA	NA	NA	86519382	86516909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86516900_86519400
31716	chr8	+	3240	13	NNC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	-144	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	50.6959208308606	105	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGCCAGAGCACAGCGT	NA	False	NA	NA	False	NA	NA	NA	72021381	72039947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72021436_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
31718	chr2	-	3117	10	Intergenic	novelGene_2619	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	43	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCTGCGCGCGCCCGCGC	7194	False	NA	NA	False	NA	NA	NA	38477492	38401711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_38401805_38440563_38440681_38447861_38447967_38448862_38448922_38450886_38451002_38458856_38458966_38459637_38459744_38467247_38467344_38472392_38472507_38475289
31719	chr17	+	1463	5	NNC	ENSMUSG00000046711.17	novel	1030	5	NA	NA	6	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	2226.4405449057	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACAGTCTCTGGTGTA	NA	False	NA	NA	False	NA	NA	NA	27775594	27782637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780454_27781577
31721	chr15	-	3099	5	NIC	ENSMUSG00000053411.17	novel	663	6	NA	NA	-6	1	intron_retention	FALSE	canonical	0	0	junction_1	199.397059908114	1	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAGACTTCTGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	79855326	79800012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79802678_79805572_79805640_79807672_79807739_79814786_79814831_79855069
31722	chr8	-	1543	3	NNC	ENSMUSG00000037070.11	novel	1695	2	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304	9	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTCTTGATTTCTCC	NA	False	NA	NA	False	NA	NA	NA	79235484	79231897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_79232098_79232160_79233447_79235427
31723	chr17	+	5046	4	FSM	ENSMUSG00000067424.14	ENSMUST00000131722.9	6440	4	33	1361	33	-1361	multi-exon	FALSE	canonical	1	2	junction_1	9.7410927974683	29	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAAATGTTCTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	33308316	33328318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_33308454_33321204_33321332_33321516_33321578_33323597
31724	chr2	-	3050	8	FSM	ENSMUSG00000026958.14	ENSMUST00000139971.8	3017	8	-41	8	-13	-5	multi-exon	FALSE	canonical	3	252	junction_5	30.9073665348966	1	87	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCTTGTCTAGTAGGAT	8988	False	NA	NA	False	NA	NA	NA	25246384	25242306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25242579_25242697_25242769_25243164_25244306_25244479_25244647_25244752_25244835_25244904_25245966_25246040_25246155_25246242
31726	chr16	-	1515	2	ISM	ENSMUSG00000022956.12	ENSMUST00000154661.8	457	4	2408	-1279	2264	-267	3prime_fragment	FALSE	canonical	3	6665	junction_1	0	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTGAGTCCAAACCAAAT	3488	False	NA	NA	False	NA	NA	NA	91725898	91722467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_91723871_91725786
31727	chr11	+	4166	2	FSM	ENSMUSG00000048070.5	ENSMUST00000123434.3	4200	2	35	-1	35	1	multi-exon	FALSE	canonical	3	13	junction_1	0	63	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTTCAGAAGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	66802841	66820703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_66802969_66816664
31729	chr5	+	2646	17	ISM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	23	4788	23	-1172	5prime_fragment	FALSE	canonical	3	453	junction_14	40.9815126001957	1	75	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCAGTAGCAATGTTAC	NA	False	NA	NA	False	NA	NA	NA	45827283	45853100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995
31730	chr13	+	1707	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4969	17135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	41	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGTGCCCGGGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	97312925	97334838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97313100_97313306_97313374_97313610_97313654_97314386_97314565_97315853_97315925_97317590_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334537
31731	chr11	+	1901	13	NIC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	7	1	intron_retention	FALSE	canonical	3	682	junction_1	161.213367932067	4	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	1431	False	NA	NA	False	NA	NA	NA	120675137	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
31732	chr18	+	2912	11	Antisense	novelGene_ENSMUSG00000024587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	153	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCAGATACATACAGCTCT	NA	False	NA	NA	False	NA	NA	NA	64633285	64648458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_64633723_64634375_64634946_64636577_64637543_64637916_64638114_64638219_64638420_64640833_64640932_64642315_64642384_64643512_64643605_64644685_64644771_64644851_64644972_64648378
31734	chr6	-	2832	9	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	10	4	intron_retention	FALSE	non_canonical	0	0	junction_3	3423.83186055843	1	171	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATACTTTTGTATCCAAA	NA	False	NA	NA	False	NA	NA	NA	51446854	51438120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51440474_51441068_51441162_51441407_51441483_51443260_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
31736	chr2	+	1907	6	NNC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	16	-1367	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	151.072168184613	44	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTTCCTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	172212616	172223001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_172212734_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
31737	chr11	+	2328	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	23	-10	combination_of_known_splicesites	FALSE	canonical	3	77	junction_1	151.766300607216	79	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGATATGGATGACCATAAC	NA	False	NA	NA	False	NA	NA	NA	78219263	78233598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78219335_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
31739	chr19	+	1494	7	NIC	ENSMUSG00000108414.2	novel	709	9	NA	NA	147	0	intron_retention	FALSE	canonical	3	781	junction_1	115.499879749817	3	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	NA	False	NA	NA	False	NA	NA	NA	8700997	8703806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702621_8702848_8702888_8703145_8703467_8703602
31740	chr10	+	1577	4	NNC	ENSMUSG00000006498.17	novel	848	7	NA	NA	-836	3	intron_retention	FALSE	non_canonical	0	0	junction_1	825.429315905096	1	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	2139	False	NA	NA	False	NA	NA	NA	79696735	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79696804_79698268_79698376_79698486_79698662_79699042
31741	chr10	+	1706	5	FSM	ENSMUSG00000020265.17	ENSMUST00000137841.9	1005	5	3	-704	3	-8	multi-exon	FALSE	canonical	3	61	junction_3	668.550858200033	2414	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTGTCTCTTGGCCTA	NA	False	NA	NA	False	NA	NA	NA	77442045	77453248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451760_77451869_77451981
31742	chr5	+	1325	11	ISM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	405	2955	405	694	5prime_fragment	FALSE	canonical	3	3618	junction_3	224.490289322278	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCAGGGCGCAGCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	129864466	129872257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181
31743	chr19	-	2385	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	32	4	-1	-4	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	302	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTTTAATCTTTTTTTT	1658	False	NA	NA	False	NA	NA	NA	6014198	5990573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
31744	chrX	-	3439	6	FSM	ENSMUSG00000033436.14	ENSMUST00000113193.9	3666	6	229	-2	4	0	multi-exon	FALSE	canonical	3	17	junction_5	6.60302960768767	100	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGTTCTGGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	133709741	133704893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709249_133709667
31745	chr8	-	4295	9	FSM	ENSMUSG00000035151.13	ENSMUST00000053902.4	4319	9	19	5	19	-5	multi-exon	FALSE	canonical	3	74	junction_4	7.29297607290741	73	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGCCTTTCTGTGGATG	8189	False	NA	NA	False	NA	NA	NA	84059096	84039655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84043091_84043429_84043564_84044359_84044429_84046042_84046177_84048061_84048192_84049295_84049394_84055740_84055770_84057739_84057888_84058978
31746	chrX	-	2255	10	NNC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	9	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	109.714556694257	20	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGCTGCGTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	36373966	36355335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36356315_36359257_36359476_36360510_36360672_36363151_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
31747	chrM	+	1643	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	761	-580	761	580	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	43	False	NA	-5	True	NA	NA	NA	12502	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12500_14100
31748	chr10	+	2415	10	ISM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	8	771	0	-686	5prime_fragment	FALSE	canonical	3	353	junction_4	22.7813005405966	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCAAAAGAGGGCATCGG	NA	False	NA	NA	False	NA	NA	NA	7601771	7638142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006
31749	chr1	+	1876	3	ISM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	38977	-1	5875	0	3prime_fragment	FALSE	canonical	3	545	junction_1	17	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCTCCTGACTGTGTG	1761	False	NA	NA	False	NA	NA	NA	87642937	87648225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87643036_87645411_87646007_87647042
31750	chr14	-	5443	21	FSM	ENSMUSG00000021910.16	ENSMUST00000022469.13	5559	21	101	15	0	-15	multi-exon	FALSE	canonical	3	883	junction_8	71.9902076674321	473	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGTTTGACACAACATGA	9422	False	NA	NA	False	NA	NA	NA	30928657	30892901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30894136_30894393_30894556_30895020_30895150_30895543_30895701_30896212_30896844_30898286_30899670_30901792_30901843_30902778_30902907_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
31751	chr13	+	1999	9	FSM	ENSMUSG00000038683.17	ENSMUST00000174472.3	1757	9	-255	13	-12	-7	multi-exon	FALSE	canonical	3	613	junction_2	42.5147033389626	31	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATTTGAAATAATACAGAG	NA	False	NA	NA	False	NA	NA	NA	41154486	41166476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
31752	chr4	+	2282	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14261	774	multi-exon	FALSE	non_canonical	0	0	junction_3	40.7621829095984	2	104	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145159048	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145176036_145176241_145176326
31753	chr12	+	4006	5	NNC	ENSMUSG00000034157.13	novel	573	5	NA	NA	5	-16	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	44.689903781503	2	129	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTTACTTGAAAGCAATT	NA	False	NA	NA	False	NA	NA	NA	86994121	87012120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86994274_86999517_86999706_87007045_87007216_87008553_87008700_87008770
31754	chr18	+	3877	10	NNC	ENSMUSG00000024576.15	novel	526	6	NA	NA	383	239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	950.313723377447	3	192	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTTTATTGTAACTCAA	1226	False	NA	NA	False	NA	NA	NA	61689142	61723371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61689317_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709585_61709657_61710248_61710324_61711737_61711833_61713405_61713520_61720496
31755	chr9	-	2794	6	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	16	7	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_4	309.593669185919	91	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTTGACATGTGCCAGAA	17	True	NA	NA	False	NA	NA	NA	4309451	4294785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308733_4308920_4309253
31756	chr7	-	1654	9	NIC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	2	intron_retention	FALSE	canonical	3	2113	junction_4	112.155514242502	516	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTAATTTCTTCTTAGGT	NA	False	NA	NA	False	NA	NA	NA	27749481	27741138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27741346_27741525_27741582_27741763_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748628_27749407
31757	chr8	-	1775	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-6	3	-6	-3	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	1	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43760023	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
31758	chr16	-	2825	12	NIC	ENSMUSG00000003526.13	novel	2386	14	NA	NA	3	-6	intron_retention	FALSE	canonical	3	102	junction_5	11.3705433554579	11	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCATCACCTTTCTCTT	8075	False	NA	NA	False	NA	NA	NA	17907024	17889595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898940_17899394_17899430_17902410_17902620_17906751
31759	chr4	+	1634	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	149	37	42	-37	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCCCTTGTTTTGGATG	NA	False	NA	NA	False	NA	NA	NA	124608717	124626216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
31760	chr4	-	4517	1	Antisense	novelGene_ENSMUSG00000066150.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCTCGACGTGTCCCACGA	2198	False	NA	NA	False	NA	NA	NA	62283503	62278986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_62279000_62283500
31761	chr1	-	2840	5	ISM	ENSMUSG00000026389.17	ENSMUST00000112643.2	2873	6	2449	-239	167	9	3prime_fragment	FALSE	canonical	3	10	junction_4	16.3554272337961	70	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAAATTGTCCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	120197986	120154143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120197854
31762	chr8	+	3648	28	NNC	ENSMUSG00000004565.16	novel	4444	35	NA	NA	4	166	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.2469204772739	1	142	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGACTTTGGAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	3566866	3591560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3567165_3567324_3567382_3567607_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290
31763	chr17	-	1305	1	ISM	ENSMUSG00000007670.11	ENSMUST00000007814.10	3978	18	9127	6	1699	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCTCCCTGTGTCCTGC	NA	False	NA	NA	False	NA	NA	NA	57329361	57328056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_57328100_57329400
31765	chr3	-	1616	12	NNC	ENSMUSG00000027679.14	novel	2499	6	NA	NA	10840	16491	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCTGCATAAAACAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	34123489	34093677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_34093687_34101779_34101898_34103301_34103471_34104221_34104302_34108369_34108479_34110476_34110564_34112170_34112230_34112314_34112385_34115980_34116180_34118266_34118467_34122307_34122398_34123063
31767	chr11	-	1625	11	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	-6	intron_retention	FALSE	canonical	2	960	junction_1	150.382977760118	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGAGTTTGAGTGCAGA	NA	False	NA	NA	False	NA	NA	NA	119190844	119179195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
31768	chr12	+	1856	6	ISM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	75	4	22	2	intron_retention	FALSE	canonical	3	1278	junction_1	255.479470799515	1	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTGCTTTTGGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	80992380	80997273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868
31770	chr3	+	2079	17	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	409.2032225481	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGCTATAGGAAATGTTA	4849	False	NA	NA	False	NA	NA	NA	34074246	34123479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100603_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116154_34118267_34118469_34122309_34122402_34123065
31771	chr7	-	2282	7	NNC	ENSMUSG00000047554.15	novel	2774	9	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_3	146.91229431951	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTATCTGTCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	109585466	109572691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_109574159_109575801_109575941_109577916_109578002_109578643_109578690_109580195_109580325_109581862_109581981_109585168
31772	chr5	+	1420	7	NIC	ENSMUSG00000029131.15	novel	1605	8	NA	NA	-10	-14	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	741.307047645501	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGGGTCTGCAGCCTT	4585	False	NA	NA	False	NA	NA	NA	29940976	29972087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29970503_29970646_29971322
31774	chr19	-	2126	1	Genic_Genomic	ENSMUSG00000071660.11	novel	NA	NA	NA	NA	7729	5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATCTTAGAAATTTATTT	9971	False	NA	NA	False	NA	NA	NA	8788559	8786433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_8786400_8788600
31775	chr9	-	4314	19	ISM	ENSMUSG00000032228.17	ENSMUST00000184783.8	3489	21	2146	-1231	-1	-4	3prime_fragment	FALSE	canonical	3	53	junction_7	13.5533923592746	100	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAACATAGTAAACTAGTGA	206	False	NA	NA	False	NA	NA	NA	72017007	71751562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957
31776	chr17	-	377	1	NIC	ENSMUSG00000055839.7	novel	537	4	NA	NA	3665	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTAAAGACTACAGACCAA	NA	False	NA	NA	False	NA	NA	NA	24044112	24043735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24043700_24044100
31777	chr6	-	2339	15	NIC	ENSMUSG00000004266.16	novel	2219	16	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	99	junction_9	22.8728740508695	321	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTATTGCCTCCAAGTC	8766	False	NA	NA	False	NA	NA	NA	124710081	124697684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
31778	chr14	-	1089	1	NIC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	8446	1982	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGAGAATTTTTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	36848650	36847561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36847600_36848600
31779	chr9	-	1731	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	44	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5026.41413952738	14	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTGTTGGTCAATGC	7144	False	NA	NA	False	NA	NA	NA	78388962	78385737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386801_78386901_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
31780	chr8	-	1657	11	NIC	ENSMUSG00000031708.18	novel	1120	12	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	3555	junction_3	288.434134595751	22	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGACTGTGTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	84321104	84298329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84300552_84301106_84301158_84320968
31781	chrX	+	1971	12	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	230.032911766703	109	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799471	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812344_150843971_150844042_150844288_150844400_150844721
31782	chr4	-	2470	21	NNC	ENSMUSG00000028559.18	novel	2903	24	NA	NA	0	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	117.955076194287	2	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTCTTAAGGCTTCATAA	NA	False	NA	NA	False	NA	NA	NA	109059431	108918891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921795_108923359_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
31783	chr2	-	2709	17	NNC	ENSMUSG00000027634.15	novel	2612	17	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	64.7329852161941	144	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	6065	False	NA	NA	False	NA	NA	NA	156833825	156769264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156770802_156771851_156771891_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812057_156833681
31784	chr7	-	1645	17	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	33	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	490.152682685457	1	36	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	33929634	33901581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905000_33907115_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
31785	chr11	-	3010	10	Antisense	novelGene_ENSMUSG00000059248.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	110	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCTCCAGAATTCCAG	NA	False	NA	NA	False	NA	NA	NA	117253135	117199756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_117199964_117242249_117242446_117242973_117243104_117243430_117243512_117243910_117244052_117245635_117245753_117247159_117247256_117247437_117247543_117250246_117250294_117251245
31786	chr19	-	1495	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	80	86	-18	-21	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTCCACACCCTAGCCT	6506	False	NA	NA	False	NA	NA	NA	4062726	4057582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
31787	chr16	-	2338	2	FSM	ENSMUSG00000022889.8	ENSMUST00000133901.2	523	2	-32	-1783	-32	1783	multi-exon	FALSE	canonical	3	1018	junction_1	0	41	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTTACTTTCAAAGACC	NA	False	NA	NA	False	NA	NA	NA	84532150	84529272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_84531502_84532041
31788	chr15	+	1594	1	NIC	ENSMUSG00000037204.8	novel	1270	3	NA	NA	12	-1374	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGCCTGGTCTTTGGAG	8042	False	NA	NA	False	NA	NA	NA	101182164	101183758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_101182200_101183800
31789	chr15	+	2001	2	FSM	ENSMUSG00000037204.8	ENSMUST00000230525.2	605	2	-805	-591	-679	0	multi-exon	FALSE	canonical	3	465	junction_1	0	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	9686	False	NA	NA	False	NA	NA	NA	101183808	101188826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101185132_101188148
31790	chr6	-	1086	1	FSM	ENSMUSG00000068262.5	ENSMUST00000089501.5	1209	1	187	-64	187	64	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2287	False	NA	NA	False	NA	NA	NA	87742999	87741913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87741900_87743000
31792	chr11	+	2277	16	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	50	-3	intron_retention	TRUE	non_canonical	0	0	junction_11	336.761478398782	7	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAAAGCTGAGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	120564279	120600265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120598725_120598784_120599483_120599536_120599755_120599826_120599896_120600073_120600169
31794	chr2	-	1847	15	NIC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-11	-5	intron_retention	FALSE	canonical	3	278	junction_14	31.2626301007501	1999	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCCTTGGGTTTCTCTAG	NA	False	NA	NA	False	NA	NA	NA	164699564	164681442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164681749_164682033_164682111_164682240_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
31795	chr15	-	2369	8	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	269	0	intron_retention	FALSE	canonical	3	377	junction_7	36.3632467511595	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	9353	False	NA	NA	False	NA	NA	NA	76500361	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76497557_76497656_76497712_76497797_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074
31796	chr14	-	3288	18	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_16	38.2839509410142	195	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	123220661	123156382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215579_123215699_123220583
31797	chr8	+	2970	4	FSM	ENSMUSG00000031700.12	ENSMUST00000143846.2	628	4	-485	-1857	-485	-23	multi-exon	FALSE	canonical	3	925	junction_1	34.3931517731203	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATACTTCCAGAGTGG	NA	False	NA	NA	False	NA	NA	NA	86245552	86254166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_86246252_86247967_86248124_86249884_86249998_86252164
31798	chr4	+	2574	5	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	16	1861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	48.8281424999969	1	124	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTATTGTCCTGTAACT	NA	False	NA	NA	False	NA	NA	NA	145136851	145178187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173065_145173196_145173287_145173342_145176036
31800	chr1	-	5019	4	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	-4082	-1536	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	1150.6825027879	21	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13712717	13695089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695611_13697575_13697662_13700288_13700438_13708454
31801	chr1	-	3954	21	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	77	-8	intron_retention	FALSE	canonical	3	85	junction_20	21.8789282187222	3	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTTTCCCAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	183126880	183107689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
31802	chr6	-	3199	11	NIC	ENSMUSG00000001518.13	novel	2320	12	NA	NA	0	-6	intron_retention	FALSE	canonical	3	237	junction_2	20.6225604617855	17	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGATGCAGCTCTCCAAT	NA	False	NA	NA	False	NA	NA	NA	128401881	128386412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_128387381_128387455_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
31803	chrX	+	2590	8	NIC	ENSMUSG00000023092.17	novel	2770	8	NA	NA	-37	3	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	57.513796037941	425	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGCCTCCTGTCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	55777109	55838703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55836598_55836799_55837203
31805	chr17	+	2274	5	Intergenic	novelGene_27	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_4	56.9797113014799	1	81	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTGTCTTAATTATTTG	NA	False	NA	NA	False	NA	NA	NA	17225409	17261727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225539_17257537_17257665_17257906_17257968_17259258_17261037_17261548
31806	chr17	+	3326	6	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	19750	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	56.2899635814414	209	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTTTTGGTATAT	NA	False	NA	NA	False	NA	NA	NA	43347208	43400080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_43347446_43348485_43349138_43350585_43351081_43375858_43376125_43396226_43396456_43398633
31807	chr3	+	2809	9	NIC	ENSMUSG00000028048.12	novel	1779	11	NA	NA	0	1	intron_retention	FALSE	canonical	3	268	junction_1	28.5326019668729	11	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCTATCTGTGACT	NA	False	NA	NA	False	NA	NA	NA	89110234	89115989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89114759_89115130_89115295_89115618_89115736_89115823
31808	chr7	-	4428	3	NIC	ENSMUSG00000030881.16	novel	4448	5	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	119	junction_2	9.5	10	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCAGTGAGGTCAATTT	NA	False	NA	NA	False	NA	NA	NA	105289559	105284828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105286193_105286327_105287248_105287415
31809	chr9	+	1031	1	Genic_Genomic	ENSMUSG00000001774.9	novel	NA	NA	NA	NA	414	941	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGCTGAGTGAGATT	NA	False	NA	NA	False	NA	NA	NA	18216910	18217941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_18216900_18217900
31810	chr11	-	1884	7	NIC	ENSMUSG00000007646.14	novel	3944	9	NA	NA	7	38	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	54.6595523826043	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGTATATGTATCTGT	NA	False	NA	NA	False	NA	NA	NA	87295325	87269378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_87270314_87271657_87271719_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
31811	chr15	-	1294	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	9821.10715390047	3	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965983_79966586_79966784_79967524
31812	chr6	-	1763	13	NNC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	242.848875617922	3	41	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTGGAAAACTTAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	97182523	97160973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97161827_97162301_97162319_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97180434_97180556_97182266_97182309_97182493
31813	chr14	-	2876	8	NNC	ENSMUSG00000022008.5	novel	5389	8	NA	NA	-52	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	47.7907855519604	44	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGAAGTTGGAATCTTCC	NA	False	NA	NA	False	NA	NA	NA	76348252	76323678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76325666_76332487_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
31814	chr13	-	1641	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-538	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	223.451709921107	2	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTTGAGATCTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	34314337	34311268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312508_34312850_34312966_34313228_34313338_34314159
31815	chr6	+	1717	11	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-1608	-93	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1879.11965824425	1	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGCTTGGTGTGTTTTTC	4083	False	NA	NA	False	NA	NA	NA	85436111	85445364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85436251_85436923_85437031_85438026_85438153_85438489_85438541_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
31816	chr15	-	2067	4	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	0	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1489.9906785689	15	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGTGCTCAGTGCCAT	4906	False	NA	NA	False	NA	NA	NA	81931799	81924687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81926471_81926518_81926570_81928097_81928219_81931687
31817	chr2	-	2529	3	ISM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	17	9	17	-9	intron_retention	FALSE	canonical	3	930	junction_2	7	7	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACATCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	152185935	152179350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_152180608_152181634_152181928_152184956
31818	chr9	-	2980	22	Intergenic	novelGene_1142	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	124	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCCACTGACGTGGAACT	NA	False	NA	NA	False	NA	NA	NA	98470435	98445792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_98445877_98450047_98450186_98452360_98452446_98452635_98452761_98453545_98453696_98455489_98455631_98456114_98456218_98459009_98459152_98459378_98459586_98461083_98461138_98462129_98462218_98462304_98462431_98463198_98463330_98464322_98464454_98464740_98464949_98467033_98467145_98467982_98468182_98469085_98469184_98469275_98469459_98469605_98469676_98469814_98469881_98470095
31819	chr4	-	2619	13	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	21	-12	at_least_one_novel_splicesite	FALSE	canonical	1	29	junction_11	293.539640991355	1	86	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779737	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765285_122766124_122766250_122779625
31820	chr7	-	4228	17	NIC	ENSMUSG00000054662.9	novel	3088	23	NA	NA	-8	-3	intron_retention	FALSE	canonical	3	82	junction_7	28.3449041936994	2	139	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697694	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140683148_140683904_140684494_140684581_140684640_140686675_140686788_140686963_140687414_140687513_140687597_140687709_140687771_140687958_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
31821	chr19	-	2959	21	NIC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-8	-221	combination_of_known_junctions	FALSE	canonical	3	100	junction_16	496.484226839081	1	153	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTCTGCTGAAGGTA	3905	False	NA	NA	False	NA	NA	NA	5345444	5324180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
31823	chr11	+	1310	4	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	16	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4366.69793881932	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3051	False	NA	NA	False	NA	NA	NA	75623754	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623762_75647642_75647850_75650117_75650255_75655445
31824	SIRV7	-	1842	4	ISM	SIRV7A	SIRV702	2247	6	110119	107	109941	-102	3prime_fragment	FALSE	canonical	3	229	junction_3	1570.0094125691	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATAATTGTAACTATAGT	NA	False	NA	NA	False	NA	NA	NA	4797	1107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV7_-_2676_2993_3112_4095_4180_4725
31825	chr15	-	2455	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	49	5	18	-5	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	771	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCGTCATCGGCCATTT	NA	False	NA	NA	False	NA	NA	NA	36496917	36477818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
31826	chr4	-	2557	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	3	-2	3	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	1	120	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726962	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
31828	chr3	-	2753	5	Antisense	novelGene_ENSMUSG00000005687.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCCGTGCCCGCCATCG	NA	False	NA	NA	False	NA	NA	NA	103086139	103079106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_103079357_103080590_103080661_103081654_103081818_103082934_103084736_103085670
31829	chr2	-	2077	11	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	73	-9	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	205.134321847905	2	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAACTCCCCTTTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	165740863	165669110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165693919_165694069_165717624_165717696_165740835
31830	chr17	-	982	6	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4	2559	4	111	5prime_fragment	FALSE	canonical	3	9263	junction_4	453.58333302713	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACATCACGCAGGAGGAGT	NA	False	NA	NA	False	NA	NA	NA	45884193	45881259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
31831	chr4	-	1728	9	ISM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	830	23	781	-23	3prime_fragment	FALSE	canonical	3	1341	junction_3	44.9047603267181	3	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAATAGTTCCTTGTCA	7207	False	NA	NA	False	NA	NA	NA	129493611	129485775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747
31832	chr17	+	1300	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1843.54175095114	16	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3022	False	NA	NA	False	NA	NA	NA	35816900	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820951_35821037_35821184
31833	chr13	+	1794	9	NIC	ENSMUSG00000038683.17	novel	1722	10	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	605	junction_4	43.5832536646818	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAGAGCTTAATTACAT	NA	False	NA	NA	False	NA	NA	NA	41154496	41166487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_41154890_41158212_41158376_41161491_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
31834	chr6	-	1819	10	FSM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	13	-8	0	8	multi-exon	FALSE	canonical	1	382	junction_8	221.210865270177	1496	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATTGTTTTCTCCCTCC	4	True	NA	NA	False	NA	NA	NA	30391009	30366370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
31837	chr4	+	1959	9	FSM	ENSMUSG00000028745.19	ENSMUST00000030518.16	1390	9	-191	-378	-191	0	multi-exon	FALSE	canonical	2	2	junction_1	549.5206433793	10	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	NA	False	NA	NA	NA	138921115	139019129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_138921531_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
31838	chr4	-	2074	8	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	77.7027302333341	718	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	132570448	132554239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132564450_132564520_132567954_132568016_132570367
31839	chr19	-	2405	19	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	518.22070051711	1	98	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5078	False	NA	NA	False	NA	NA	NA	53027053	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52988787_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000330_53000615_53000713_53001829_53001947_53013682_53013815_53020439_53020529_53026944
31840	chr17	-	3980	34	NNC	ENSMUSG00000024242.16	novel	4220	34	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_33	52.9802361056886	129	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTGCGTAGTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	81035587	80887945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222_81035280_81035521
31841	chr3	+	2033	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	690.71623918721	2	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3744	False	NA	NA	False	NA	NA	NA	88204362	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208110_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
31842	chr1	-	1860	8	Antisense	novelGene_ENSMUSG00000026456.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCAGACTGCCCAGAACC	5234	False	NA	NA	False	NA	NA	NA	134339459	134333858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_134334200_134334335_134334409_134334782_134334889_134335309_134335440_134336139_134336228_134337339_134337422_134338227_134338448_134338639
31843	chr9	-	2622	18	NNC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	417.63115131263	1	81	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	NA	False	NA	NA	NA	64080177	64044425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057550_64060832_64060933_64062445_64062498_64063294_64063389_64065976_64066049_64068102_64068248_64068648_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080089
31844	chr4	-	1249	2	Intergenic	novelGene_1800	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGTCCTGGAACTCAC	6467	False	NA	NA	False	NA	NA	NA	11202809	11200787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_11201415_11202187
31845	chrX	+	1028	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	220	-38	220	38	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATAAAATATTTCTACTA	NA	False	NA	NA	False	NA	NA	NA	13069029	13070057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13069000_13070100
31846	chr8	+	2539	12	NNC	ENSMUSG00000070002.8	novel	3072	12	NA	NA	33173	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	55.6146719448851	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGTGGTTTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	71025510	71045508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038527_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147_71044463_71044519
31847	chr5	-	2423	3	Antisense	novelGene_ENSMUSG00000007812.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTCTCGACTGCCAGAA	8944	False	NA	NA	False	NA	NA	NA	145182625	145168564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_145168641_145179728_145179833_145180382
31848	chr9	+	2927	15	NIC	ENSMUSG00000032512.8	novel	3845	19	NA	NA	-1	20	intron_retention	FALSE	canonical	3	238	junction_12	22.2858287542848	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGTCCTTCACTCCCA	NA	False	NA	NA	False	NA	NA	NA	119723970	119749710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119747624_119748714_119748821_119749622
31849	chr2	+	3230	14	NIC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	19	-22	intron_retention	FALSE	canonical	3	23	junction_1	19.5075467114198	3	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGGAAATAAAAAGGGAAA	NA	False	NA	NA	False	NA	NA	NA	84669779	84693900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
31850	chr17	+	2315	6	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	-48	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	117.263122933001	1	102	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCTTCTAAGGGATGCA	NA	False	NA	NA	False	NA	NA	NA	17341628	17367096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366130_17366465_17366743_17366826
31851	chr7	-	3817	26	FSM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	-18	7	-18	-7	multi-exon	FALSE	canonical	3	16	junction_25	15.5434873821804	97	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGATTCTGGCTCACCT	7622	False	NA	NA	False	NA	NA	NA	81143691	81110153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81143255
31852	chr7	-	2322	17	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	136	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	741.662143010549	1	71	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCATCTGCCTCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	33867864	33840124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850503_33853908_33854070_33855339_33855410_33856667_33856765_33857392_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864833_33864869_33867802
31853	chr5	+	2715	11	NNC	ENSMUSG00000050017.12	novel	2632	11	NA	NA	20	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	460.984207972464	2	110	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGCTCCTGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	111478648	111536227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533394_111533475_111534391
31854	chr17	+	2804	9	NNC	ENSMUSG00000002768.9	novel	706	4	NA	NA	-3652	-1000	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	39	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCCGGCCCGACAGCTT	NA	False	NA	NA	False	NA	NA	NA	46986066	46991779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46987319_46987427_46987506_46987624_46987736_46987872_46988429_46988613_46988727_46988857_46989037_46989209_46989422_46989969_46990121_46991627
31855	chr8	+	2410	12	NIC	ENSMUSG00000031629.15	novel	3010	14	NA	NA	0	-297	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	124.31225679748	13	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGGCAGTGTTAACAG	NA	False	NA	NA	False	NA	NA	NA	47005103	47032745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
31856	chr9	-	3168	3	ISM	ENSMUSG00000032803.16	ENSMUST00000116517.9	3741	5	4917	23	4917	-19	3prime_fragment	FALSE	canonical	3	423	junction_1	47	4	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTGAATAAACAGTAAACCA	NA	False	NA	NA	False	NA	NA	NA	103237179	103230325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_103233229_103233478_103233639_103237074
31857	chr6	-	1529	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	86	560	2	-93	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	3	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTTGACTAAAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	87828002	87820156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
31858	chr13	-	2415	5	Intergenic	novelGene_1425	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	8.8423695919137	186	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCAAAGTTTCCACCTTT	NA	False	NA	NA	False	NA	NA	NA	65960874	65893013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_65894337_65894418_65894575_65895411_65896095_65896542_65896686_65960764
31859	chr5	-	2497	13	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	48	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	432.12770585403	1	96	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGGTCTCTGAGCCTT	NA	False	NA	NA	False	NA	NA	NA	24782417	24770339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24773166_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
31860	chr9	-	3241	8	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.5958702606873	25	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGATTGTTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	114763018	114728408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114730448_114732718_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
31861	chr6	-	1384	2	NNC	ENSMUSG00000030117.6	novel	2125	2	NA	NA	334	-444	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	0	35	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCATATTATATCCAATTG	12	True	NA	NA	False	NA	NA	NA	122586449	122582805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122584095_122586354
31863	chr11	-	3386	19	FSM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	8	9	8	4	multi-exon	FALSE	canonical	2	6	junction_6	6.51399253648882	75	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGAAGTTGTCTGTCT	1479	False	NA	NA	False	NA	NA	NA	120823690	120717363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120717751_120751226_120751453_120751963_120752096_120757380_120757503_120764411_120764626_120769703_120769875_120772640_120772742_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
31864	chr1	-	3278	7	NNC	ENSMUSG00000099913.2	novel	3142	7	NA	NA	26522	11836	intron_retention	TRUE	non_canonical	0	0	junction_1	0	5	43	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAACTGCGGGCGCCCGC	NA	False	NA	NA	False	NA	NA	NA	53365304	53352829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53353020_53354015_53354259_53357060_53359455_53360236_53360369_53360653_53360725_53362323_53362427_53365159
31865	chr2	-	4122	15	NNC	ENSMUSG00000027104.19	novel	2396	14	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	120.668736123119	1	172	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGTTTATAATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	73722867	73646865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672719_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73700966_73700997_73704013_73704090_73710628_73710726_73722818
31866	chr8	+	2699	12	NIC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	5457	-399	intron_retention	FALSE	canonical	3	384	junction_3	54.0813589735849	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACCTGTCCAGCATTCC	11	True	NA	NA	False	NA	NA	NA	70501155	70524598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
31867	chr8	-	1583	10	NIC	ENSMUSG00000035770.9	novel	4627	13	NA	NA	-75	-2657	intron_retention	FALSE	canonical	3	129	junction_3	10.8092324506803	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGCCTCCCCCGGAACT	1996	False	NA	NA	False	NA	NA	NA	105169451	105149795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
31868	chr14	-	3559	4	FSM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	267	0	77	0	multi-exon	FALSE	canonical	3	84	junction_3	22.3755819291179	700	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTACGGGGTCACTTTC	NA	False	NA	NA	False	NA	NA	NA	20027050	19922626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025
31869	chr14	-	1378	9	NNC	ENSMUSG00000060373.16	novel	2617	9	NA	NA	141	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	1298.48882720453	20	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8925	False	NA	NA	False	NA	NA	NA	52341285	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341153
31870	chr10	-	2185	21	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-4	-959	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	357.55235980203	2	53	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845574	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77823834_77824743_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837154_77837335_77837843_77837922_77841274_77841349_77845432
31871	chr12	-	3261	15	NNC	ENSMUSG00000051235.11	novel	5268	14	NA	NA	-6	640	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.8993355310596	32	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTTGAAATGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	11315808	11290930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_11291899_11291936_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
31872	chr1	-	2419	12	NIC	ENSMUSG00000006301.18	novel	2378	12	NA	NA	20	-2	combination_of_known_junctions	FALSE	canonical	2	3	junction_11	38.0389100486062	53	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTTGAGTTGCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	74343259	74327407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74342933
31873	chr2	+	2809	4	NNC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	50	2124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	41.6439938313104	10	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATGGATTATTATCTGT	3492	False	NA	NA	False	NA	NA	NA	91541316	91554014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_91541597_91542424_91543211_91550698_91551761_91553333
31874	chr5	-	2494	23	NNC	ENSMUSG00000029415.5	novel	5020	22	NA	NA	17	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	77.1648043138411	88	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAAATCTCTCCATAA	NA	False	NA	NA	False	NA	NA	NA	92457831	92431866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92432076_92434551_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
31875	chr9	-	2594	6	NNC	ENSMUSG00000110790.2	novel	3485	2	NA	NA	3964	12326	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	45	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGACTGAGGCGGGCGGCG	2103	False	NA	NA	False	NA	NA	NA	20939689	20927276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20927397_20930214_20930476_20936839_20937154_20937606_20938632_20938727_20938977_20939064
31877	chr5	-	1345	12	NNC	ENSMUSG00000005378.18	novel	1516	13	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	301.451639420141	1865	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	False	NA	NA	False	NA	NA	NA	135092922	135081810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092658_135092776_135092867
31878	chr17	+	999	1	Genic_Genomic	ENSMUSG00000067931.7	novel	NA	NA	NA	NA	-177	-20870	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCTCCATTTCTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	21787092	21788091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_21787100_21788100
31879	chr3	+	1602	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	462	1903	1	-672	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCAAATGCTTAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	30847485	30873509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
31880	chr2	-	3355	3	NNC	ENSMUSG00000017670.17	novel	3052	20	NA	NA	2291	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	155.5	2	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTAGACTGCTTCCTATC	NA	False	NA	NA	False	NA	NA	NA	165136606	165131080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165133813_165133925_165134103_165136160
31881	chr4	-	2020	12	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	580	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	120.607827000922	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149250537	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235221_149235309_149235433_149235569_149235670_149238393_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463
31882	chr12	-	1338	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	93	-14	-93	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	5	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGAGACTTCTGTCGCCC	NA	False	NA	NA	False	NA	NA	NA	111638731	111635887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
31884	chr17	-	1031	5	ISM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	18	4055	3	297	5prime_fragment	FALSE	canonical	3	81	junction_2	5.58457697592217	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGGAGTTAACTTTAAAT	4841	False	NA	NA	False	NA	NA	NA	23805188	23798872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
31885	chr9	-	671	5	NIC	ENSMUSG00000097195.11	novel	939	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	1285	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	88404941	88403104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
31886	chr11	+	3358	6	Genic_Genomic	ENSMUSG00000096923.2	novel	1615	1	NA	NA	-94022	-1481	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	82	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGGCACCGCCTCACACC	NA	False	NA	NA	False	NA	NA	NA	6056006	6150162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_6058356_6063242_6063430_6075415_6075560_6100492_6100627_6143152_6143475_6149940
31889	chr18	+	2298	12	NIC	ENSMUSG00000024442.7	novel	2394	13	NA	NA	0	-3	intron_retention	FALSE	canonical	2	3	junction_9	111.198801943722	952	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGGTCTTGCCCTTGAGT	3967	False	NA	NA	False	NA	NA	NA	38383311	38395679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38392949_38393110_38394116_38394339_38394932
31890	chr15	-	2172	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	-41	-5	-23	-2	multi-exon	FALSE	canonical	3	158	junction_1	88.3053055575902	550	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGTCCTTTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	8128716	7902537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
31891	chr17	+	3088	21	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	73	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	62.4919794853708	1	80	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATAATTTGGTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	45817839	45831753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827924_45828288_45828380_45828618_45828757_45828837_45828948_45829087_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
31896	chr18	+	1926	10	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	782	-12	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	354.099100308806	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTGCTAATACACTGCA	NA	False	NA	NA	False	NA	NA	NA	68438849	68454965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68439271_68440716_68440859_68442391_68442464_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
31899	chr15	-	3571	18	Genic_Genomic	ENSMUSG00000115976.2	novel	544	2	NA	NA	-5652	27593	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	72	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCGGCGCGCACTGCTGC	632	False	NA	NA	False	NA	NA	NA	80896263	80862014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_80862065_80886767_80886864_80887565_80887645_80888002_80888067_80890602_80890811_80890903_80891013_80891645_80891790_80892048_80893108_80893422_80893479_80893606_80893735_80893833_80893989_80894139_80894762_80894915_80894986_80895058_80895110_80895185_80895273_80895438_80895563_80895661_80895722_80895854
31900	chr5	+	5303	23	Antisense	novelGene_ENSMUSG00000106815.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	63	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGCGGCGAGTGCGCGCC	NA	False	NA	NA	False	NA	NA	NA	76362136	76452329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_76364726_76374779_76375077_76377206_76377407_76378003_76378207_76379242_76379396_76383612_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390735_76390924_76391008_76393041_76393162_76393268_76393381_76396187_76396310_76402220_76402310_76410520_76410616_76413639_76413787_76414203_76414264_76414646_76414740_76421807_76421893_76451272_76451350_76452214
31902	chr14	-	1665	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	216	0	-120	0	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	6	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63746325	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
31903	chr14	-	1596	13	NNC	ENSMUSG00000021814.18	novel	2851	13	NA	NA	0	361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	350.73941735837	3	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8170	False	NA	NA	False	NA	NA	NA	20530009	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20514972_20517942_20518004_20519455_20519558_20521543_20521641_20523342_20523398_20529962
31904	chr12	-	1336	9	Antisense	novelGene_ENSMUSG00000021116.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCGGAACACCAACCCCGGA	NA	False	NA	NA	False	NA	NA	NA	78932056	78908889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_78908949_78913293_78913540_78921335_78921416_78923861_78923932_78923977_78924018_78926724_78926830_78927903_78928002_78930029_78930174_78931562
31905	chr7	-	3396	14	NIC	ENSMUSG00000038520.16	novel	2411	16	NA	NA	0	1	intron_retention	FALSE	canonical	2	3	junction_5	65.5597654071206	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGCTGGCTGGCATCAGGA	7883	False	NA	NA	False	NA	NA	NA	44498319	44490454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44490845_44490966_44491054_44491406_44491725_44492044_44492145_44492239_44492288_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44496309_44497693_44497766_44497859_44497959_44498272
31906	chr12	+	2274	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	4	681	4	-681	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGACAGCCTTTCATCT	NA	False	NA	NA	False	NA	NA	NA	8363435	8393143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
31907	chr7	+	2114	7	NIC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-7	-7	intron_retention	FALSE	canonical	3	5787	junction_3	294.804266515184	3	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGGACTGCCAGACCTC	NA	False	NA	NA	False	NA	NA	NA	142606523	142621664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_142606804_142616229_142616345_142618945_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
31908	chr3	+	1707	15	NNC	ENSMUSG00000027998.12	novel	1851	15	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	194.864578827535	9	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCACCTGTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	82962857	82979593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973242_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
31909	chr4	+	1717	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174350.8	1124	4	58	-651	53	0	multi-exon	FALSE	canonical	3	284	junction_1	212.397426224205	737	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3256	False	NA	NA	False	NA	NA	NA	129494552	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129495037_129495987_129496055_129500879_129500973_129501248
31910	chr11	-	913	8	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6903.0483476357	3	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113076	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106010_33110396_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
31911	chr7	-	2444	15	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	-143	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	433.764560421378	1	80	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGAGATTGGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	143102986	143067321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143074120_143074178_143077877_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143083397_143083452_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
31912	chr6	-	1148	9	ISM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	4771	0	4723	0	3prime_fragment	FALSE	canonical	3	629	junction_4	202.05502808641	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	267	False	NA	NA	False	NA	NA	NA	34289642	34280868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574
31913	chr8	+	2016	9	NIC	ENSMUSG00000019139.11	novel	1916	10	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	300	junction_1	47.6954858975145	78	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCTCCTTGTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	71047121	71049936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049562_71049646
31915	chrX	-	1333	9	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCAATGTCCGCTCCACA	NA	False	NA	NA	False	NA	NA	NA	20548943	20544859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
31916	chr7	+	2223	6	NIC	ENSMUSG00000030512.14	novel	955	8	NA	NA	2	-3	intron_retention	FALSE	canonical	3	2772	junction_4	210.023808174216	67	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGGACTGTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	65710293	65724325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65720414_65720979_65721074_65724069
31917	chr17	+	3488	16	NNC	ENSMUSG00000024030.8	novel	5832	15	NA	NA	15	1289	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	10.1552394796425	2	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTCATTTAATTTCAAG	NA	False	NA	NA	False	NA	NA	NA	31276715	31334751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_31276831_31283358_31283603_31311282_31311401_31313619_31313753_31317226_31317278_31323010_31323157_31324490_31324615_31325033_31325149_31327279_31327429_31327588_31327691_31328456_31328626_31329930_31330032_31330194_31330354_31331902_31332022_31333030_31334176_31334253
31918	chr14	+	2815	7	ISM	ENSMUSG00000016831.13	ENSMUST00000022766.8	5350	10	6731	1893	143	-1893	3prime_fragment	FALSE	canonical	3	458	junction_2	37.9634326980875	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACATCTTTTAAATGTGC	NA	False	NA	NA	False	NA	NA	NA	52523333	52531965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
31919	chrM	+	939	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	238	-39	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTACCAGTCCAAAACTA	307	False	NA	NA	False	NA	NA	NA	10404	11505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_10546_10707
31920	chr10	-	1051	7	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2116	3612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGACGCTTCGGGCCAG	2819	False	NA	-5	True	NA	NA	NA	126903153	126899536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_126899627_126900451_126900588_126900701_126900871_126901022_126901134_126901821_126901872_126901967_126902109_126902799
31921	chr1	+	2982	6	Antisense	novelGene_ENSMUSG00000026374.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	111	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCGCCAAGGCTGGCGCCG	NA	False	NA	NA	False	NA	NA	NA	118226359	118238917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_118228771_118232423_118232501_118232929_118233042_118236470_118236572_118237502_118237596_118238729
31922	chr15	+	1736	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	54	147	54	-147	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	6	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACGTTTTCTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	85220499	85347266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
31923	chr5	+	2353	13	NIC	ENSMUSG00000029146.15	novel	2018	15	NA	NA	1	0	intron_retention	FALSE	canonical	3	351	junction_6	23.8990934277153	51	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	NA	False	NA	NA	NA	31350586	31356244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
31925	chr12	-	2037	1	Intergenic	novelGene_4361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTAAGTCTATCCAAAT	NA	False	NA	NA	False	NA	NA	NA	56386680	56384643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_56384600_56386700
31926	chr10	-	2371	8	NNC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	3	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	315.57779855176	5	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGTTGCCAGATACA	NA	False	NA	NA	False	NA	NA	NA	82599975	82584567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_82586282_82586571_82586652_82587217_82587244_82588331_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
31927	chr17	-	2667	5	FSM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	204	1	204	-1	multi-exon	FALSE	canonical	3	22	junction_1	1.11803398874989	105	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACTTGGCTGTTTCCAT	NA	False	NA	NA	False	NA	NA	NA	22384967	22363340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
31928	chr4	-	1576	3	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	214	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490	28	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224423	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220405_127220494_127220565_127224294
31929	chr5	+	1998	15	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-4	764	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	349.268309528386	79	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGGATTTGGTCCATTC	NA	False	NA	NA	False	NA	NA	NA	31652091	31668967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31653922_31654065_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
31930	chr16	+	1684	13	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	724.907561156747	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916_22932265_22932581
31931	chr2	-	3190	8	NNC	ENSMUSG00000008999.8	novel	3670	7	NA	NA	76	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	35.366304729277	219	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTCCGACCCATGTGT	NA	False	NA	NA	False	NA	NA	NA	172781809	172709817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172710882_172711043_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
31932	chr4	-	3488	6	NNC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	430	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	78.6628247649422	1	70	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTACTGTGGCCGTCTGT	8630	False	NA	NA	False	NA	NA	NA	129075893	129041794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075596_129075816
31933	chr16	-	2674	10	Antisense	novelGene_ENSMUSG00000022721.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	59	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCGGAAGTGCGCGCGT	2365	False	NA	NA	False	NA	NA	NA	18071364	18066760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18067116_18067349_18067898_18068317_18068425_18068681_18068865_18069018_18069133_18069220_18069520_18069984_18070132_18070279_18070696_18070783_18070885_18070960
31934	chr2	+	2326	6	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	23215	6985	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAAGCCTAACTTACTGT	NA	False	NA	NA	False	NA	NA	NA	5876160	5883691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5876829_5878549_5878629_5879035_5879229_5881173_5881372_5881650_5881809_5882661
31935	chrX	+	3039	13	Antisense	novelGene_ENSMUSG00000065510.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACGTGTCATGTGACTGT	NA	False	NA	NA	False	NA	NA	NA	111972565	112095194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_111974057_111974543_111974639_111979273_111979342_111981615_111981719_111989834_111989913_112019872_112020099_112021625_112021744_112022242_112022365_112025713_112026128_112049032_112049157_112050409_112050486_112069200_112069266_112095135
31936	chr13	-	2210	2	Intergenic	novelGene_1333	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCCAGGCTGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	28994887	28992558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_28993805_28993923
31937	chr6	-	2593	20	NNC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-26	38	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_19	235.431306917768	415	6	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATCACTTGTCCTAG	NA	False	NA	NA	False	NA	NA	NA	47572301	47507214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47572216
31938	chr3	+	1431	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-11	68	-11	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATATTGCCCTGTAAATTG	5429	False	NA	NA	False	NA	NA	NA	54388847	54390278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54388800_54390300
31939	chr15	-	1524	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	58	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5258.74321698847	2	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGTAAAAGCTTTAAGAAA	216	False	NA	NA	False	NA	NA	NA	98832261	98829330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830435_98830572_98830722_98830853_98831077_98832213
31940	chr13	+	1933	14	NNC	ENSMUSG00000035367.10	novel	3855	3	NA	NA	-10298	-4532	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	98	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGGGAGTAGTGACAGAC	NA	False	NA	NA	False	NA	NA	NA	58539763	58550338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_58540229_58541009_58541195_58541840_58541968_58542118_58542182_58542306_58542592_58542974_58543108_58543387_58543504_58544003_58544073_58544639_58544714_58545566_58545611_58546969_58547027_58547706_58547803_58548144_58548234_58550208
31942	chr3	+	2488	5	NNC	ENSMUSG00000105961.2	novel	1027	3	NA	NA	9084	6607	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.866025403784439	35	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTCTGTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	108143186	108154170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108143301_108145985_108146078_108146699_108148305_108148675_108149297_108154114
31943	chrX	-	1860	13	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	-2	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	508.552684914094	3	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTGTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	100128980	100122809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100122918_100123084_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127701_100127881_100128877
31944	chr11	-	1852	10	Antisense	novelGene_ENSMUSG00002075624.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	25	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTCATGAATGGAAGT	NA	False	NA	NA	False	NA	NA	NA	76878201	76840842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_76840895_76841869_76842011_76843325_76843414_76845333_76845430_76856638_76856794_76857554_76857715_76857817_76857888_76859426_76859545_76862732_76862803_76877299
31946	chrX	+	1518	8	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_6	505.773079713883	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72235784	72246536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72245455_72245552_72245645
31947	chr12	+	1624	4	ISM	ENSMUSG00000021235.14	ENSMUST00000124257.8	2851	8	46	2815	1	-50	5prime_fragment	FALSE	canonical	3	218	junction_2	8.80656320908194	4	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAAGTACGACCAGTCT	NA	False	NA	NA	False	NA	NA	NA	84408815	84417755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_84409012_84413658_84413794_84414916_84415484_84417029
31948	chr12	+	1827	3	NIC	ENSMUSG00000021235.14	novel	2851	8	NA	NA	-20	-3	intron_retention	FALSE	canonical	3	224	junction_2	23	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGAACTTGTGTCTCTTT	442	False	NA	NA	False	NA	NA	NA	84417755	84420559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84419309_84419424_84419592_84420452
31949	chr1	+	1660	12	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	585.514607308734	11	28	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724157	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729726_59740058_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
31950	chr10	+	1890	6	FSM	ENSMUSG00000006732.15	ENSMUST00000120542.8	1044	6	0	-846	0	96	multi-exon	FALSE	canonical	3	10	junction_4	158.453273869617	238	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAACCAGAGTTACAGAT	NA	False	NA	NA	False	NA	NA	NA	126877826	126882330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880865_126880997_126881147
31951	chr2	+	1595	5	NNC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-9	-7	intron_retention	FALSE	non_canonical	0	0	junction_4	2168.64202901263	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACTGCCTTTGGTTA	NA	False	NA	NA	False	NA	NA	NA	26800819	26803323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26801139_26801433_26802172_26802377_26802458_26802682_26802795_26802977
31954	chr14	+	2002	8	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	28	-14	intron_retention	FALSE	non_canonical	0	0	junction_2	559.991180688571	2	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTCTGTTTAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	8348857	8357575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349777_8350609_8350772_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
31955	chr11	+	1717	10	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	2	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	904.714660699135	11	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	107370355	107388965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384360_107386463_107386592_107388349
31957	chr3	+	4321	22	NNC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	-8	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	100.34886990699	1	206	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAGACCCCCTTCCCA	NA	False	NA	NA	False	NA	NA	NA	88243609	88269619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88243805_88249164_88249264_88249747_88249830_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256698_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
31958	chr10	-	1838	11	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	2	-195	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	628.156349963924	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGCTAACCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	127358253	127353202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127355925_127356786_127356985_127358156
31959	chr2	+	2350	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	-14	614	2	501	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	1086	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATTTGTTTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	181138959	181158550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
31960	chr15	+	1722	9	Antisense	novelGene_ENSMUSG00000022404.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1560	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCGCCTCCACCAGAACG	NA	False	NA	NA	False	NA	NA	NA	81203113	81245012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_81203977_81207809_81207894_81211241_81211338_81211417_81211564_81213250_81213367_81222135_81222289_81224174_81224244_81228302_81228362_81244876
31961	chr1	+	1750	12	NIC	ENSMUSG00000033793.13	novel	1811	13	NA	NA	3	10	combination_of_known_splicesites	FALSE	canonical	2	7	junction_3	202.705910003663	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGATTCTCACTCCAAAC	NA	False	NA	NA	False	NA	NA	NA	5153357	5232652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_5153502_5154639_5154787_5159231_5159335_5165837_5165952_5168251_5168357_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
31962	chr7	+	3529	14	NNC	ENSMUSG00000030539.14	novel	3760	14	NA	NA	118	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	24.4240157299879	337	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGTGGCCCACATTC	5830	False	NA	NA	False	NA	NA	NA	79848401	79876145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79848519_79862543_79862708_79863010_79863074_79865371_79865471_79866076_79866185_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
31964	chr9	-	2700	10	NNC	ENSMUSG00000032437.11	novel	4221	16	NA	NA	54239	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	239.959924637634	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGATTTCTGATACCTTG	NA	False	NA	NA	False	NA	NA	NA	115085250	115071648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_115072971_115073013_115073114_115075112_115075326_115077572_115077687_115079846_115080021_115080745_115080918_115081566_115081755_115082900_115083113_115083856_115084012_115085200
31965	chr7	+	3444	5	FSM	ENSMUSG00000030753.16	ENSMUST00000033009.16	3723	5	273	6	48	-6	multi-exon	FALSE	canonical	3	187	junction_4	20.5791156272567	145	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATTTCAGGTGAGGTG	NA	False	NA	NA	False	NA	NA	NA	98352582	98367263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_98352686_98356203_98356325_98359332_98359441_98362065_98362103_98364188
31966	chr3	+	2070	16	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	48	-5826	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	410.403129725991	2	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	NA	False	NA	NA	NA	63883574	63924174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919076_63921674_63921806_63922845_63922900_63924077
31967	chr17	+	2531	10	FSM	ENSMUSG00000007603.10	ENSMUST00000233549.2	2749	10	-39	257	-12	-4	multi-exon	FALSE	canonical	3	256	junction_2	26.7830792354676	76	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATTTCTTTTATTTTGT	9211	False	NA	NA	False	NA	NA	NA	57071744	57076836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
31968	chr10	-	3919	10	Antisense	novelGene_ENSMUSG00000006345.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGGTGTTATCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	75419729	75399883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_75400089_75400651_75400738_75409442_75409576_75410055_75410230_75411782_75411913_75412047_75412135_75414560_75414755_75415058_75415215_75416332_75416486_75417128
31969	chr11	+	2258	11	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	15905	-4325	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2142.11326497924	4	93	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGTGGGGGAACTGTAG	NA	False	NA	NA	False	NA	NA	NA	55376448	55391339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55376565_55378304_55378387_55379844_55380031_55382807_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
31970	chr11	+	2815	2	ISM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	24	0	-21	0	intron_retention	FALSE	canonical	3	155	junction_1	0	263	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	NA	False	NA	NA	NA	60619247	60623777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_60619394_60621108
31971	chr2	+	3827	11	FSM	ENSMUSG00000039157.13	ENSMUST00000048375.6	4223	11	375	21	1	-15	multi-exon	FALSE	canonical	3	103	junction_7	13.8115893364956	278	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGATGTTTTTGTTACTGC	1984	False	NA	NA	False	NA	NA	NA	32425745	32459747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32426245_32448038_32448160_32448329_32448360_32450050_32450168_32453430_32453478_32453613_32453772_32455412_32455518_32455599_32455817_32456280_32456403_32456499_32456570_32457406
31973	chr7	+	2704	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	29	31	1	-31	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	635	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCATGGCCCTAGAGTC	NA	False	NA	NA	False	NA	NA	NA	16515293	16532168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
31974	chr5	-	3011	15	Antisense	novelGene_ENSMUSG00000104633.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	99	32	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCACCGCGGGAGAGTT	NA	False	NA	NA	False	NA	NA	NA	143868261	143846853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_143846896_143848741_143848878_143850218_143850303_143850433_143850538_143851435_143851619_143853171_143853349_143854400_143854495_143856324_143856425_143858831_143858914_143860289_143860455_143862043_143863018_143864913_143865085_143865759_143865860_143865997_143866169_143867833
31975	chr2	+	3058	6	ISM	ENSMUSG00000060227.16	ENSMUST00000078752.10	4215	10	38990	316	7153	-3	3prime_fragment	FALSE	canonical	3	136	junction_4	30.1688581156132	472	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTCACAGTTTTGATTA	NA	False	NA	NA	False	NA	NA	NA	121736440	121766385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958
31976	chr6	-	3901	9	FSM	ENSMUSG00000030352.16	ENSMUST00000032503.12	1405	9	10	-2506	3	-5	multi-exon	FALSE	canonical	3	88	junction_5	10.9971587239614	190	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAACCAGACTGTTATTTA	6176	False	NA	NA	False	NA	NA	NA	128120513	127938363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344_128060445_128120476
31977	chr8	-	3020	6	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	51	1	intron_retention	FALSE	canonical	3	78	junction_5	18.1504820872615	32	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTCATTGCTATGTTCT	NA	False	NA	NA	False	NA	NA	NA	27713805	27687490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27688099_27688420_27689446_27689537_27690373_27690749_27690932_27692399_27692680_27713715
31978	chr1	-	2359	6	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	70.4346505634833	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	121255482	121232081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247635_121255419
31979	chr7	-	2548	7	FSM	ENSMUSG00000025722.17	ENSMUST00000139990.8	2549	7	-1	2	-1	-2	multi-exon	FALSE	canonical	3	120	junction_4	7.94599829404014	107	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTATTTTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	80550981	80540473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
31981	chr7	-	3225	12	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	10	-8	intron_retention	FALSE	canonical	3	112	junction_6	40.6949953265521	2	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTCAAAGAAAGCACTGC	NA	False	NA	NA	False	NA	NA	NA	30364375	30353148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30353728_30356373_30357344_30357927_30358409_30358487_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
31982	chr11	-	3181	21	Intergenic	novelGene_2261	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	66	3	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCGGAAGCGCGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	50061746	50022233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_50022382_50026649_50026761_50031206_50031329_50035853_50036081_50036927_50037188_50038846_50039054_50040526_50040740_50042248_50042307_50042747_50042897_50043449_50043659_50045905_50046030_50047570_50047863_50049247_50049372_50049486_50049587_50050468_50050537_50052279_50052522_50052870_50052937_50054649_50054719_50058990_50059051_50059520_50059628_50061521
31983	chr7	+	4112	6	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-157	1087	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	8.7086164228309	80	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGATGGTAGTCTGTTTG	2997	False	NA	NA	False	NA	NA	NA	6980087	6995173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6980472_6984231_6984357_6985317_6985372_6987994_6988152_6989101_6989202_6991881
31984	chr2	-	1717	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	60	398	25	1	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	3475	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGTTTGGGGAT	NA	False	NA	NA	False	NA	NA	NA	73044731	72923542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
31985	chrX	+	2282	9	NIC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	20	1	intron_retention	FALSE	canonical	3	76	junction_7	67.3163009604657	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	73326322	73333755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332626_73332710_73332789_73332904
31987	chr11	-	2096	11	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	0	-20	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	167.650260960131	8	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCCTTTGGTTTGGTGG	NA	False	NA	NA	False	NA	NA	NA	6576043	6566444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6570741_6571066_6573815_6574284_6575148_6575214_6575964
31989	chr5	-	1808	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	4	4	4	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	126	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGGGCTGTTCTCTATC	NA	False	NA	NA	False	NA	NA	NA	134975784	134973976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134974000_134975800
31990	chr18	-	3253	10	ISM	ENSMUSG00000024268.17	ENSMUST00000115816.3	3995	13	248915	-9	-3829	9	3prime_fragment	FALSE	canonical	3	7	junction_2	9.7410927974683	118	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAAAACCTCAAAGAGTC	NA	False	NA	NA	False	NA	NA	NA	25638125	25610679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_25612769_25619850_25620023_25624137_25624282_25629278_25629360_25630521_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
31991	chr11	-	1740	13	NIC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	3	-67	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	301.112785716951	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTGTGACCCTCTGG	4518	False	NA	NA	False	NA	NA	NA	6217743	6208985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
31992	chr2	+	3282	16	NNC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	6	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	132.149645814466	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAACTCGAATGCAAGG	NA	False	NA	NA	False	NA	NA	NA	153003473	153052373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153003492_153020808_153020878_153029486_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
31993	chr8	+	1814	11	FSM	ENSMUSG00000005481.19	ENSMUST00000109810.2	1794	11	-19	-1	-19	1	multi-exon	FALSE	canonical	3	134	junction_1	682.0140834323	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACGTGCCATCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84442157	84449978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
31994	chr19	+	2208	10	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-8	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	126.361132483328	62	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	60800014	60824673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263_60823975_60824115
31996	chr4	-	1074	5	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	967.380838915057	4	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTGCCTTTTATATATA	2	True	NA	NA	False	NA	NA	NA	41098180	41092773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093006_41093285_41093703_41094719_41094839_41095144_41095272_41098001
31998	chr9	+	3472	11	ISM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	497	43	382	-43	3prime_fragment	FALSE	canonical	3	631	junction_10	34.8	2	156	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTTTATTAAAGATAAGAGA	NA	False	NA	NA	False	NA	NA	NA	107465337	107470194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
31999	chr11	-	1006	5	NNC	ENSMUSG00000020738.17	novel	1051	4	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2066.56968186413	19	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGCTGTTCTCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	115427052	115413931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115414547_115418308_115418367_115421171_115421244_115425377_115425510_115426923
32000	chr5	+	2095	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	92	0	44	0	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	1	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33816021	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
32001	chrX	-	2492	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	19	-1204	19	-2	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	371	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGTGTATTTTATT	NA	False	NA	NA	False	NA	NA	NA	69520767	69503360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
32002	chr11	-	1128	12	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7536.73754857054	10	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113077	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102623_33102714_33102853_33103985_33104061_33106002_33106086_33106700_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
32003	chr11	-	2461	11	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	-2	intron_retention	FALSE	non_canonical	0	0	junction_10	586.459342154254	2	117	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCCATTGTCACTGCTG	3747	False	NA	NA	False	NA	NA	NA	120463699	120451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462539_120463478
32004	chr5	-	3103	7	FSM	ENSMUSG00000001098.16	ENSMUST00000102581.11	3103	7	-5	5	-5	-5	multi-exon	FALSE	canonical	3	95	junction_4	16.3401346383682	189	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCACGCCGCCTTCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	114518574	114501632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507089_114508119_114508290_114512956_114513171_114518486
32005	chr19	+	3594	1	NIC	ENSMUSG00000036372.15	novel	606	4	NA	NA	2	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	64	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGGCCTGCCTCATGTC	4183	False	NA	NA	False	NA	NA	NA	10181583	10185177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10181600_10185200
32007	chr8	-	1863	21	NNC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	230.535566670308	1902	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTGTAATATAGTCTTG	3355	False	NA	NA	False	NA	NA	NA	105261247	105237669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_105237900_105239638_105239726_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
32008	chr9	+	2823	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	349.090750437213	1	133	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5509	False	NA	NA	False	NA	NA	NA	35122447	35128306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122690_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
32009	chr15	-	2625	13	NIC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	2	1	intron_retention	FALSE	canonical	3	647	junction_2	89.2535013318805	5	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGTAGCTTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	99149840	99140705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99148464_99149742
32010	chrX	-	3446	9	NNC	ENSMUSG00000036022.16	novel	3536	9	NA	NA	2689	-6	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	24.9446261747896	4	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATGGATCGTAAAAGT	NA	False	NA	NA	False	NA	NA	NA	52355208	52332307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52355147
32011	chr17	-	2010	2	FSM	ENSMUSG00000092203.8_ENSMUSG00000092687.3	ENSMUST00000174464.2	785	2	-1228	3	-1	0	multi-exon	FALSE	canonical	3	190	junction_1	0	570	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6006	False	NA	NA	False	NA	NA	NA	35171448	35169216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169452_35169673
32012	chr2	+	3637	6	NNC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	59	0	intron_retention	FALSE	non_canonical	0	0	junction_1	103.693008443193	4	88	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	25390949	25395483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25392159_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25394340_25394428
32013	chr8	-	3124	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238460.2	882	5	23	-2265	0	0	multi-exon	FALSE	canonical	2	4	junction_4	33.4542598184446	143	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	NA	False	NA	NA	NA	70169113	70157786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169034
32014	chr2	-	1975	11	NNC	ENSMUSG00000027597.16	novel	2543	10	NA	NA	-5	-427	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	557.510367616603	1	73	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAAAGAATTTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	154916372	154901656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154902234_154902306_154902501_154904068_154904264_154905706_154905818_154905924_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
32015	chr19	-	3390	7	NIC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	4	17	intron_retention	FALSE	canonical	3	2610	junction_6	220.068486814648	2	116	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	8691239	8684933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8685459_8685557_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8690268_8690705
32016	chr1	-	1924	10	ISM	ENSMUSG00000026193.16	ENSMUST00000190780.7	7694	44	0	54580	0	2721	5prime_fragment	FALSE	canonical	3	1514	junction_1	90.8353550573512	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCATTTAGGTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	71692331	71679262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
32018	chr19	+	3615	2	FSM	ENSMUSG00000006463.14	ENSMUST00000162754.2	939	2	-1063	-1613	0	0	multi-exon	TRUE	canonical	3	165	junction_1	0	10	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	4928731	4935423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4930427_4933503
32019	chr4	+	3842	4	NIC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	8	-157	intron_retention	FALSE	canonical	3	381	junction_2	558.131605348496	8	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTATGCTTTTTAGCAGT	4694	False	NA	NA	False	NA	NA	NA	135583430	135590817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_135583603_135585615_135585783_135586152_135589189_135590350
32020	chr4	-	3316	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	41	495	13	4	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	1	119	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAATGAAGTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	126954904	126941381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
32022	chr13	-	1180	4	FSM	ENSMUSG00000021576.7	ENSMUST00000220861.2	1262	4	23	59	23	-59	multi-exon	FALSE	canonical	3	803	junction_1	15.7550697307953	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGGTTGCTAATAGAT	NA	False	NA	NA	False	NA	NA	NA	74465380	74457043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74457962_74459786_74459832_74464448_74464511_74465225
32025	chr5	+	2660	5	NNC	ENSMUSG00000045294.12	novel	2697	5	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	505.572447825235	521	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTTGTATTCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	28276364	28283658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_28276794_28278544_28278670_28279479_28279637_28280080_28280160_28281788
32029	chr9	+	2703	21	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCGCCCGGCGCATTTC	NA	False	NA	NA	False	NA	NA	NA	61826181	61854056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61826253_61826893_61826976_61827156_61827239_61828299_61828529_61831913_61832095_61832252_61832426_61832811_61832970_61833642_61833803_61834319_61834446_61834629_61834750_61834835_61834915_61836944_61837047_61839081_61839204_61839355_61839468_61842632_61842836_61843951_61844053_61844361_61844497_61844707_61844809_61851476_61851608_61852629_61852701_61853892
32031	chr9	-	3702	19	FSM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	99	5	50	-2	multi-exon	FALSE	canonical	3	264	junction_18	79.7176537599273	1	161	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGTGCTGCTGTCCTCC	NA	False	NA	NA	False	NA	NA	NA	109930056	109913392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
32033	chr16	+	3582	8	Antisense	novelGene_ENSMUSG00000022538.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	127	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGGCAGGAGGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	30386050	30401634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_30386653_30387922_30388067_30388146_30388253_30389985_30392179_30393354_30393425_30399776_30399872_30400876_30400963_30401348
32034	chr12	+	2103	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	43	-45	at_least_one_novel_splicesite	FALSE	canonical	1	36	junction_5	1987.11529858651	2	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGCATACAAGTATTAAA	NA	False	NA	NA	False	NA	NA	NA	24758282	24764100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761447_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
32037	chr3	+	2823	25	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	173.050249606549	1	91	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGTGTCTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	54600227	54636182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614553_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619685_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
32038	chr11	+	4161	12	NIC	ENSMUSG00000020366.19	novel	4675	12	NA	NA	2	-322	combination_of_known_junctions	FALSE	canonical	3	26	junction_4	104.259609224774	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAAAATGTACAGCATG	NA	False	NA	NA	False	NA	NA	NA	49737721	49776916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49760038_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
32039	chr4	-	3433	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	-4	0	-4	0	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	509	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	120955442	120916433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
32041	chr11	+	1336	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-33	multi-exon	FALSE	non_canonical	0	0	junction_2	980	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGACAGTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120653994_120654217
32042	chr12	+	2336	6	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_3	177.344185131625	40	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGCAGTGATGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	109506884	109538155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109506983_109509582_109509733_109509909_109511004_109515666_109516246_109524670_109524755_109537824
32043	chr15	-	2083	2	FSM	ENSMUSG00000058600.14	ENSMUST00000136653.2	464	2	-1557	-62	0	-3	multi-exon	FALSE	canonical	3	4307	junction_1	0	99	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAAAACATGGTGTCTGT	361	False	NA	NA	False	NA	NA	NA	34443368	34440658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34440751_34441377
32045	chr11	+	980	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	121	346	107	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691307	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
32046	chr1	-	2847	19	NNC	ENSMUSG00000026594.15	novel	4398	20	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	64.2745845744819	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAAATATAAAACCTTTT	NA	False	NA	NA	False	NA	NA	NA	156767178	156635699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767143
32047	chr1	+	2210	13	FSM	ENSMUSG00000049439.14	ENSMUST00000060608.13	2223	13	-3	16	-3	-16	multi-exon	FALSE	canonical	3	86	junction_1	9.38083151964686	272	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCTATCACTCTATTTG	NA	False	NA	NA	False	NA	NA	NA	60382478	60427203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60382617_60391279_60391330_60392067_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
32048	chr6	+	2983	15	FSM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	41	-95	8	95	multi-exon	FALSE	canonical	3	31	junction_7	7.03816128585544	7	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTTGCTATGTGCTTGG	1322	False	NA	NA	False	NA	NA	NA	72391331	72407790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
32049	chr6	+	1339	1	Intergenic	novelGene_4187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAGTCTCATCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	72407952	72409291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_72408000_72409300
32050	chr11	+	5080	10	FSM	ENSMUSG00000020261.16	ENSMUST00000108867.2	1611	10	180	-3649	180	0	multi-exon	FALSE	canonical	3	47	junction_4	8.44590630621328	77	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGCAAACTGTGTCTT	1084	False	NA	NA	False	NA	NA	NA	55104800	55127156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192
32051	chr9	-	1835	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	57	2032	-5	-31	multi-exon	FALSE	canonical	3	517	junction_5	114.47891605978	1	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCACTCCTGAAAGACACT	NA	False	NA	NA	False	NA	NA	NA	108526522	108482172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
32052	chr1	+	2088	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	858.947816832208	1	68	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724163	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731635_59731888_59735136_59735259_59737481_59737600_59740026_59740109_59741971_59742107_59743221_59743363_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
32053	chr17	-	2246	2	Antisense	novelGene_ENSMUSG00000037805.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGGATAGCGCCACGATAA	8893	False	NA	NA	False	NA	NA	NA	28549995	28547620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_28549678_28549806
32055	chr11	+	3340	27	NNC	ENSMUSG00000020464.16	novel	3368	27	NA	NA	-2	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	198.594931318909	1	133	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGCTATTTTTATATCT	NA	False	NA	NA	False	NA	NA	NA	29080745	29111675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29082844_29082906_29083851_29083931_29084605_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091770_29095428_29095500_29096795_29096833_29097319_29097365_29097443_29097534_29098277_29098332_29103231_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
32056	chr5	-	2481	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	36	-1332	-15	1332	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	2615	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTGTGTATGGGTGTA	NA	False	NA	NA	False	NA	NA	NA	143846621	143838189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
32057	chr15	+	2684	13	NNC	ENSMUSG00000022385.12	novel	2641	12	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	235.885153317362	2	98	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7086	False	NA	NA	False	NA	NA	NA	85743894	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746735_85746775_85746897_85748317_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
32058	chr2	+	3012	14	NIC	ENSMUSG00000027255.15	novel	3068	16	NA	NA	-107	-11	intron_retention	FALSE	canonical	3	197	junction_8	19.5375529770583	2	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGGTCAGTGTCCTCT	5714	False	NA	NA	False	NA	NA	NA	91095530	91107265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
32060	chr11	-	3050	10	ISM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	853	3	269	-1	intron_retention	FALSE	canonical	3	438	junction_8	41.6674074008232	4	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCAGCTATCTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	6575190	6566425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815
32061	chr11	+	2077	7	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	22	0	intron_retention	FALSE	canonical	3	529	junction_2	7.65397500213669	1192	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGGTTAAGATCA	9160	False	NA	NA	False	NA	NA	NA	70538082	70542238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540844_70540951_70541046_70541589
32062	chr2	+	2804	14	NNC	ENSMUSG00000026917.16	novel	2890	14	NA	NA	48	-5	at_least_one_novel_splicesite	FALSE	canonical	2	26	junction_13	411.205890064416	37	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAATTTTGTTCCATATAA	NA	False	NA	NA	False	NA	NA	NA	27405216	27426542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424801
32064	chr11	+	1312	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-27	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GTCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654479_120654765
32065	chr17	+	3055	4	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	1	-92	intron_retention	FALSE	canonical	0	0	junction_1	1458.01973771124	1	121	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGCACGACACCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	37313461	37321432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313632_37314177_37315796_37316941_37317087_37320310
32066	chr17	+	5067	6	FSM	ENSMUSG00000034998.19	ENSMUST00000112238.9	5085	6	15	3	-9	-3	multi-exon	FALSE	canonical	3	257	junction_4	10.9288608738514	264	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGCTTTGTTATTTGT	NA	False	NA	NA	False	NA	NA	NA	88748153	88797958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_88748313_88770140_88770692_88783283_88783379_88786703_88786769_88791828_88791898_88793830
32067	chr6	-	2391	8	NNC	ENSMUSG00000040669.15	novel	3683	13	NA	NA	11789	-1	intron_retention	FALSE	non_canonical	0	0	junction_7	375.850599932191	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGAAAGTTGGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	122300315	122294709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299432_122299966_122300056_122300118
32069	chr13	-	2758	2	NNC	ENSMUSG00000042364.12	novel	4447	2	NA	NA	9960	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	272	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCGCTTGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	113740217	113728718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113731399_113740139
32070	chr7	-	1276	9	NIC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	51	293	combination_of_known_splicesites	FALSE	canonical	3	12	junction_8	8490.6143319771	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGGTAAGGCAGGCAGG	NA	False	NA	NA	False	NA	NA	NA	126399568	126394790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126399459
32072	chr6	+	2208	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115206.8	1879	12	10	-339	-1	2	multi-exon	FALSE	canonical	3	122	junction_11	119.561388499108	229	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAGAGTTGACAAGAT	25	True	NA	NA	False	NA	NA	NA	30048039	30145198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
32073	chr2	-	2352	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	83	40	-69	-40	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	2	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGCTAGCACTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	75534902	75505896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
32074	chr2	-	3860	29	Genic_Genomic	ENSMUSG00000084892.2	novel	2358	2	NA	NA	-20277	7631	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	174	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCCGCCTCAATCTGATT	3365	False	NA	NA	False	NA	NA	NA	30234275	30188447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_30188498_30190812_30190848_30212256_30212310_30212496_30212584_30212680_30212759_30213532_30213645_30215237_30215358_30215481_30215546_30216456_30216588_30217472_30217599_30219317_30219426_30220575_30220774_30220856_30221029_30222396_30222465_30222829_30222898_30223281_30223472_30226332_30226412_30226654_30226736_30226941_30227094_30227235_30227415_30229517_30229712_30229827_30229919_30230598_30230756_30231702_30231848_30232399_30232450_30232535_30232800_30232930_30233064_30233284_30233401_30233716
32075	chr10	-	2402	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	963.488736547836	1	116	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGTGTTCTCTTTGTG	8732	False	NA	NA	False	NA	NA	NA	128401816	128393632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395112_128395227_128395306_128395402_128395969_128396164_128396535_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399449_128399575_128401608
32076	chr19	+	2582	3	Antisense	novelGene_ENSMUSG00000024640.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	71	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCGCGTCTCCGGATGCA	NA	False	NA	NA	False	NA	NA	NA	15894478	15902337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_15896891_15898300_15898358_15902224
32077	chr4	-	2934	8	NNC	ENSMUSG00000006219.13	novel	3036	9	NA	NA	10	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	675.175411826211	1	171	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTTGTTTTTGTCTGGG	NA	False	NA	NA	False	NA	NA	NA	141327189	141303369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308298_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141327158
32078	chr17	+	2889	8	NNC	ENSMUSG00000007603.10	novel	2749	10	NA	NA	5	2	intron_retention	FALSE	canonical	2	4	junction_1	97.1594523640056	26	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTCCTTGTGATT	9228	False	NA	NA	False	NA	NA	NA	57071761	57077095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57071890_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249
32080	chr10	-	1484	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	0	-188	0	7	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	4735	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTTTTACCCAGTGTGAC	6557	False	NA	NA	False	NA	NA	NA	40123032	40099234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
32081	chr17	-	3170	15	NIC	ENSMUSG00000041168.11	novel	2951	18	NA	NA	4322	0	intron_retention	FALSE	canonical	3	584	junction_14	81.8467021514076	3	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGCCTGAGTCTCAG	5905	False	NA	NA	False	NA	NA	NA	56929553	56921296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56926393_56926985_56927070_56927222_56927353_56927513_56927576_56928923_56929159_56929433
32083	chr17	+	2386	14	NNC	ENSMUSG00000024069.15	novel	2148	14	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	53.5758048367481	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGTGGCAGTGAGGTC	NA	False	NA	NA	False	NA	NA	NA	74702613	74730663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716426_74716568_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
32086	chrX	+	2562	3	ISM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	30119	4	30119	-4	3prime_fragment	FALSE	canonical	3	2215	junction_2	54.5	4	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCGCCACTTTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	52107132	52110532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_52109029_52109199_52109277_52109943
32090	chr12	-	3240	4	ISM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	106935	0	493	0	3prime_fragment	FALSE	canonical	3	124	junction_3	15.06283137026	111	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCCCTGGTTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	100888380	100877781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785
32091	chr11	-	2127	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	24	0	24	0	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	1147	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	NA	False	NA	NA	NA	84020402	83969745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
32092	chr11	+	2120	17	NNC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	16	-18	intron_retention	FALSE	canonical	0	0	junction_10	29.5094661718914	19	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGTTTTTTGTGGACA	8699	False	NA	NA	False	NA	NA	NA	83363956	83397551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389272_83389382_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
32093	chr2	-	1644	4	ISM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	15219	36	15066	-28	3prime_fragment	FALSE	canonical	3	12105	junction_2	636.517783639145	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCAAGGATCAGTGCC	NA	False	NA	NA	False	NA	NA	NA	154719636	154713365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590
32094	chr11	+	1298	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	297	31	297	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653916	120655214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653900_120655200
32095	chr3	-	3368	7	NNC	ENSMUSG00000004896.17	novel	1620	7	NA	NA	52	-9	intron_retention	FALSE	canonical	3	9	junction_6	42.8981351576033	1	57	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTTTCTATAAATACCAT	9512	False	NA	NA	False	NA	NA	NA	87837382	87830978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87834968_87835230
32096	chrX	+	1386	13	FSM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	-18	15	-18	0	multi-exon	FALSE	canonical	3	663	junction_3	69.864700592566	2648	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	181	False	NA	NA	False	NA	NA	NA	73356620	73363740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
32097	chr11	-	2298	7	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGCTCAGAAGACAGTCA	NA	False	NA	NA	False	NA	NA	NA	72336050	72332195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72332598_72333223_72333308_72333393_72333468_72333568_72334476_72334564_72334733_72334826_72334945_72335505
32098	chrX	+	2364	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	-8	8	7	-8	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	1	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTGGAAAAATCTTGC	NA	False	NA	NA	False	NA	NA	NA	133502026	133507795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
32100	chr10	-	2081	7	NIC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	-5	17	intron_retention	FALSE	canonical	3	2056	junction_1	110.037367390456	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGATGTCACTGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	69188745	69174136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69182062_69185925_69185989_69188665
32102	chr16	+	2332	11	NIC	ENSMUSG00000022721.20	novel	2367	12	NA	NA	-11	0	intron_retention	FALSE	canonical	3	222	junction_1	22.6680391741324	172	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGTGGTGAACCAGAG	377	False	NA	NA	False	NA	NA	NA	18066854	18071365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
32107	chr17	-	1440	9	FSM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	-132	6	-132	-6	multi-exon	TRUE	canonical	3	702	junction_8	54.719597723302	3928	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGGCTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46559112	46554851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
32108	chr4	+	2198	6	ISM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	46	3387	46	13	intron_retention	FALSE	canonical	3	674	junction_3	30.1768122902337	2272	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGTCTGAGGCAGTAG	NA	False	NA	NA	False	NA	NA	NA	156077413	156094680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600
32109	chr10	+	1353	9	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1839.54632654359	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTCTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	126899401	126903154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899525_126899590_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
32110	chr11	+	2277	4	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	38	-821	intron_retention	FALSE	non_canonical	0	0	junction_2	497.333109919521	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAGTGGACCTAAAATAAG	NA	False	NA	NA	False	NA	NA	NA	101518835	101525965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101519279_101521063_101522324_101524504_101524727_101525613
32111	chr9	-	1502	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	33	-4	33	4	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	250	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATCCTGTGTATATTTGT	NA	False	NA	NA	False	NA	NA	NA	70328796	70314969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
32116	chr12	-	1231	7	Antisense	novelGene_ENSMUSG00000020585.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	191	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTTTGAAAGTCATGGACA	NA	False	NA	NA	False	NA	NA	NA	8988742	8972207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_8972294_8981626_8981746_8984690_8984773_8984865_8984987_8985984_8986081_8986694_8986793_8988113
32118	chr12	+	1975	15	ISM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	-11	9686	-8	8171	5prime_fragment	FALSE	canonical	3	362	junction_1	44.7195341511277	38	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCAGGAATCAAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	99850784	99911792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498
32120	chr11	-	3813	7	NNC	ENSMUSG00000018501.18	novel	3171	9	NA	NA	8368	1045	intron_retention	FALSE	canonical	2	5	junction_6	181.61352433732	46	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTAGACAGTGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	62320939	62291163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62320851
32121	chr11	-	3062	6	NNC	ENSMUSG00000049321.18	novel	3069	6	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	19.4668949758301	124	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	50806969	50789541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50792119_50796916_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
32122	chr2	+	4335	26	FSM	ENSMUSG00000002546.18	ENSMUST00000239447.2	4361	26	18	8	18	0	multi-exon	FALSE	canonical	3	80	junction_7	19.1852443299532	107	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGGCCTAGGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	32178282	32197925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32178409_32182104_32182228_32186637_32186734_32186976_32187021_32187119_32187184_32187532_32187590_32187765_32187847_32188611_32188651_32188897_32188961_32189043_32189138_32189215_32189323_32191696_32191756_32192153_32192296_32192714_32192805_32192907_32193016_32193156_32193245_32193595_32193934_32194153_32194268_32194645_32194892_32194970_32195047_32195221_32195308_32195486_32195706_32195784_32195888_32195988_32196096_32196171_32196329_32196417
32123	chr13	-	2279	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	116	94	21	3	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	1	95	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTCACAATTCTCATTTG	NA	False	NA	NA	False	NA	NA	NA	100922962	100915251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
32124	chr4	-	2628	13	Antisense	novelGene_ENSMUSG00000028687.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGGGGGCGTGGCTTCGGT	9641	False	NA	NA	False	NA	NA	NA	116676351	116664928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_116664967_116671513_116671633_116672759_116672908_116672993_116673033_116673155_116673231_116673507_116673550_116673630_116673703_116673777_116673891_116673971_116674070_116674145_116674296_116674375_116674431_116674579_116674768_116674860
32125	chr1	+	2078	6	FSM	ENSMUSG00000026421.15	ENSMUST00000097561.9	1828	6	-250	0	-250	0	multi-exon	FALSE	canonical	3	16	junction_1	177.543684765187	790	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	135647548	135679970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_135647932_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
32126	chr15	+	2556	4	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	-237	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	635.924698547102	1	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513577	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100517976_100518398
32127	chr16	-	3496	10	FSM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	32	0	-15	0	multi-exon	FALSE	canonical	3	30	junction_2	10.3494497975067	117	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATTTATCTAATTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	62667371	62614047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_62616072_62622084_62622154_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
32128	chr13	+	3802	4	ISM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	9683	8	-1925	-5	3prime_fragment	FALSE	canonical	3	205	junction_1	17.2111075245674	5	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACATTTGTAGTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	34231262	34258049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_34234418_34244416_34244549_34247892_34248017_34257658
32129	chr7	+	1639	1	FSM	ENSMUSG00000033585.6	ENSMUST00000038775.6	3694	1	1721	334	1721	-334	mono-exon	FALSE	NA	NA	NA	NA	NA	161	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTGTGAAATAATTTCT	NA	False	NA	NA	False	NA	NA	NA	61998037	61999676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_61998000_61999700
32131	chr10	+	4142	17	NIC	ENSMUSG00000035697.15	novel	3499	22	NA	NA	14	-1253	intron_retention	FALSE	canonical	2	5	junction_14	17.448025497173	3	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAGATTACATACA	834	False	NA	NA	False	NA	NA	NA	79855500	79866043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79855633_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79861381_79861989_79862181_79862266_79862392_79862490_79862762_79862866_79863040_79863654_79863793_79864490_79864718_79864806
32132	chrX	-	3126	4	NNC	ENSMUSG00000050029.8	novel	3545	3	NA	NA	-9	-385	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	51.4867836331703	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTATGGAGGCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	50106904	50093173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_50095628_50103847_50103961_50104003_50104161_50106502
32133	chr2	+	2193	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	28	-19	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	63.6142818831128	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAACTATTTAAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	180367083	180384054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180381611_180381728_180382318_180382375_180382505_180382536_180383075
32134	chr8	-	4652	2	NNC	ENSMUSG00000090290.3	novel	6383	30	NA	NA	45716	2803	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1162	72	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCCCGGCCTCCGTTTG	NA	False	NA	NA	False	NA	NA	NA	127156088	127149264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_127149569_127151740
32135	chr11	-	2555	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	54.30350903717	102	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3613	False	NA	NA	False	NA	NA	NA	54846917	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
32138	chr7	+	3864	12	Antisense	novelGene_ENSMUSG00000030760.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	310	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGGCGGGGCTAGAGCC	NA	False	NA	NA	False	NA	NA	NA	97863014	97958747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_97864913_97864971_97866100_97867264_97867309_97873118_97873226_97875607_97875710_97893156_97893213_97901094_97901137_97906907_97906983_97908609_97908665_97910793_97910847_97915343_97915454_97958553
32139	chr14	-	3125	6	NNC	ENSMUSG00000095195.8	novel	1955	7	NA	NA	223	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.54919333848297	21	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	NA	NA	NA	18897527	18875552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_18892819_18892971_18896174
32141	chr18	-	2315	16	Intergenic	novelGene_4564	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGCGCGCCAGCAGCGGG	NA	False	NA	NA	False	NA	NA	NA	75420037	75151819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_75152054_75176147_75176339_75186049_75186104_75188350_75188446_75189700_75189835_75196168_75196245_75213273_75213399_75215434_75215579_75247860_75248042_75252179_75252361_75256528_75256653_75258492_75258608_75259893_75259987_75332229_75332335_75376353_75376468_75419688
32142	chrX	-	3571	5	NIC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	-12	-183	intron_retention	FALSE	canonical	3	30	junction_1	95.2664027871316	174	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTGAAGAATTAAAAATAGC	NA	False	NA	NA	False	NA	NA	NA	156381659	156349125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156381491
32143	chr14	-	1592	11	Antisense	novelGene_ENSMUSG00000088761.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGCTGAGGGGCAGCAGC	NA	False	NA	NA	False	NA	NA	NA	56679341	56640148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_56640291_56643038_56643127_56658529_56658624_56661914_56662026_56663055_56663129_56665344_56665444_56668932_56669102_56671772_56671851_56672049_56672127_56676058_56676366_56678987
32145	chr17	-	2044	10	FSM	ENSMUSG00000003200.11	ENSMUST00000003268.11	2073	10	29	0	29	0	multi-exon	FALSE	canonical	3	585	junction_1	54.5914116159513	558	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	NA	False	NA	NA	NA	56343606	56323749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
32149	chr5	-	2114	14	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10675	-8022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	93	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTGCGGGGTCTTCTC	3878	False	NA	NA	False	NA	NA	NA	129875188	129864466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864641_129865299_129865360_129866114_129866247_129866877_129867061_129867653_129867736_129868516_129868645_129868826_129869004_129869080_129869164_129870696_129870780_129871463_129871562_129872178_129872314_129873808_129873922_129874430_129874494_129874585
32150	chr7	+	2298	8	NIC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	-13	0	intron_retention	FALSE	canonical	3	3512	junction_1	332.451868543341	39	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	12762038	12764962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12762706_12762807_12762915_12763014_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
32151	chr7	+	2389	3	FSM	ENSMUSG00000006333.15	ENSMUST00000128729.2	378	3	1	-2012	0	-5	multi-exon	FALSE	canonical	3	8457	junction_1	2914.5	3	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTTTATTGGTGTG	1313	False	NA	NA	False	NA	NA	NA	3707040	3709888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644
32154	chr14	-	3936	17	NIC	ENSMUSG00000046753.11	novel	4262	18	NA	NA	-8	3	intron_retention	FALSE	canonical	3	74	junction_14	12.6229887011753	44	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTTGTCATGTTAGG	7518	False	NA	NA	False	NA	NA	NA	27230425	27204360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
32155	chr6	-	1666	3	FSM	ENSMUSG00000004268.12	ENSMUST00000141251.2	1074	3	-28	-564	9	-5	multi-exon	FALSE	canonical	3	1245	junction_2	29.5	47	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTTTTCTTTTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	124689132	124681349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124682620_124682703_124682806_124688838
32156	chr6	+	2805	3	Intergenic	novelGene_4233	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGAATCTCTGTGAGCT	5023	False	NA	NA	False	NA	NA	NA	117922391	117925941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_117922672_117923108_117924336_117924643
32157	chr3	+	1586	15	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-32	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	378.448713264332	5	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTGTACCTTAGGCT	NA	False	NA	NA	False	NA	NA	NA	32762881	32781068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670_32780868_32781011
32158	chr5	-	2982	14	FSM	ENSMUSG00000029169.12	ENSMUST00000031061.12	3010	14	17	11	-3	-11	multi-exon	FALSE	canonical	3	749	junction_10	48.0023421519305	1	122	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCCCAAGTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	52347839	52307555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
32159	chr4	-	1922	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	-16	13	-16	-13	multi-exon	FALSE	canonical	3	336	junction_2	18.5	1411	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCCTCCCTAGTACATT	NA	False	NA	NA	False	NA	NA	NA	135601177	135598241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135599766_135600205_135600411_135600984
32161	chr10	-	1585	10	NNC	ENSMUSG00000000902.14	novel	1660	9	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	407.374187197792	2145	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTTCTGTGCAGTAGCAT	6872	False	NA	NA	False	NA	NA	NA	75757440	75732609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75732923_75733278_75733411_75740217_75740286_75740342_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
32162	chr16	+	2382	21	NNC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	72.3359523335388	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTTGCCTCTCTGCTC	NA	False	NA	NA	False	NA	NA	NA	20367418	20379568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20367496_20367715_20367853_20368028_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
32163	chr12	+	2164	7	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	112	12763	112	-12763	5prime_fragment	FALSE	canonical	3	9	junction_2	30.1754130966845	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATAAAACAAGCAGATC	NA	False	NA	NA	False	NA	NA	NA	72583268	72614130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670
32164	chr3	+	2363	20	NNC	ENSMUSG00000028034.16	novel	2526	20	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	543.382894034295	1	89	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	NA	False	NA	NA	NA	151916159	151938408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151920461_151920525_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927984_151928933_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
32165	chr3	-	1887	9	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	3	0	intron_retention	FALSE	canonical	3	72	junction_8	319.4856951023	69	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6157	False	NA	NA	False	NA	NA	NA	153618589	153612929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
32166	chr5	-	1339	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	40	1	-20	-1	multi-exon	FALSE	canonical	3	819	junction_4	94.8542741964395	2500	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTTTTTCACTC	NA	False	NA	NA	False	NA	NA	NA	45607538	45591395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
32169	chr17	-	3197	4	ISM	ENSMUSG00000056692.14	ENSMUST00000114859.9	3573	5	26478	11	26388	-11	3prime_fragment	FALSE	canonical	2	6	junction_1	17.9133717900592	302	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACCCCGCCTT	NA	False	NA	NA	False	NA	NA	NA	28013038	27970230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27972970_27987109_27987214_28005044_28005243_28012882
32170	chr10	+	2672	10	ISM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	72	5	3	-5	intron_retention	FALSE	canonical	3	3777	junction_3	133.54381534644	160	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACTTGGCTTAGGATAG	2124	False	NA	NA	False	NA	NA	NA	61484402	61509942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169
32171	chr10	+	2884	14	NNC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	-22	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	30.9425885630509	18	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATTCATTGTATTCATT	NA	False	NA	NA	False	NA	NA	NA	23672861	23703862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701815_23701939_23702040_23702094_23702491
32172	chr9	-	2244	16	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-1991	1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	272.476461776466	2	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCACCCTTTAGCTAT	NA	False	NA	NA	False	NA	NA	NA	108523290	108481883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108482353_108482532_108482672_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108523130
32173	chr14	+	1595	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6583	False	NA	NA	False	NA	NA	NA	76741961	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744088_76744204
32174	chr3	-	1684	4	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	107	-5	intron_retention	FALSE	canonical	3	9125	junction_1	860.871780361177	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049902	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86046556_86048545_86048734_86049004_86049109_86049814
32175	chr18	-	2494	13	NIC	ENSMUSG00000024454.17	novel	2032	15	NA	NA	-4	-126	intron_retention	FALSE	canonical	3	500	junction_2	39.5610463573562	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAATTGGTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	38088031	38070150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_38070737_38074005_38074164_38074431_38074820_38074930_38075021_38076508_38076574_38076730_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
32176	chr6	-	1276	8	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	68	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2030.08794420943	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTCGGGCTGATTGCTG	NA	False	NA	NA	False	NA	NA	NA	125471686	125437231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438392_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
32177	chr6	+	1984	4	Antisense	novelGene_ENSMUSG00000030268.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAAGACAACACACACACA	NA	False	NA	NA	False	NA	NA	NA	144944882	144956395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144946031_144950076_144950152_144953341_144953482_144955774
32179	chr4	-	1699	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	729.869946558213	6	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTCTTTTTGTGTGTGT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093358_41093420_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
32180	chr17	-	2319	16	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	5	0	intron_retention	FALSE	non_canonical	0	0	junction_1	644.248999481826	2	92	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5793	False	NA	NA	False	NA	NA	NA	33904340	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865363_33865476_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889050_33889108_33896247_33896415_33904240
32181	chr2	-	2533	1	Intergenic	novelGene_2676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATATATAATTTGAGGCA	NA	False	NA	NA	False	NA	NA	NA	104659914	104657381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_104657400_104659900
32182	chr11	-	1949	6	NIC	ENSMUSG00000009894.16	novel	1896	5	NA	NA	-7	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_5	132.4259793243	846	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACATCAGAGGAGCCGGGT	NA	False	NA	NA	False	NA	NA	NA	59340840	59297971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59333617_59333668_59340740
32183	chr12	+	1879	13	NNC	ENSMUSG00000017843.15	novel	4108	13	NA	NA	48	-10	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_12	268.830130173106	56	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGAAGATATCAGTGTG	4969	False	NA	NA	False	NA	NA	NA	110452220	110538112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110537631
32185	chr4	+	3426	4	NNC	ENSMUSG00000001333.10	novel	2042	5	NA	NA	5700	1877	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4.49691252107735	20	30	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACCAGATGGATTATTG	NA	False	NA	NA	False	NA	NA	NA	129187123	129204229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129188170_129200134_129200260_129201834_129203670_129203809
32186	chr1	+	1560	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	576	151	29	66	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAAATACTTAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	90531278	90540912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
32187	chr8	+	3039	17	ISM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	1456	270	-134	-270	3prime_fragment	FALSE	canonical	3	978	junction_12	68.5877346451244	1	146	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCTAGAACAAGACGCCG	3275	False	NA	NA	False	NA	NA	NA	106939023	106979156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
32188	chr10	+	2185	13	NNC	ENSMUSG00000004929.13	novel	2832	13	NA	NA	-40	-342	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	151.607772448073	36	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCCTGCCTGGTCCTCTC	5502	False	NA	NA	False	NA	NA	NA	80905920	80918051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917581_80917960
32189	chr2	+	2509	20	NNC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	-46	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	188.441604289358	4	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTCTTGAACAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	166857183	166876855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166857347_166859662_166859810_166861861_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
32190	chr17	+	3905	22	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	7	766	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	86.6671899513245	1	185	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGATGGACTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	45817773	45832535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819792_45819903_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826400_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828691_45828837_45828948_45829075_45829185_45829493_45829576_45829780_45829892_45830438_45830523_45830629_45830741_45831211
32191	chr14	-	2489	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	-16	2	-16	0	multi-exon	FALSE	canonical	3	610	junction_1	26.6868413267663	3	95	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTTGGTGATAAATTGA	NA	False	NA	NA	False	NA	NA	NA	40688780	40628403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
32192	chr5	+	1478	9	NNC	ENSMUSG00000029131.15	novel	1018	9	NA	NA	21	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	653.772597601796	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGGGTCTGCAGCCTT	4567	False	NA	NA	False	NA	NA	NA	29940958	29972087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971508_29971599
32193	chr1	+	2341	9	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	-24	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	343.948374578221	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGATTGCTTTATATAGT	NA	False	NA	NA	False	NA	NA	NA	4878094	4916956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878195_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185_4915999_4916066
32196	chr11	-	1918	12	ISM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	2918	0	2918	0	3prime_fragment	FALSE	canonical	3	2404	junction_3	150.342309139362	1	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	8119	False	NA	NA	False	NA	NA	NA	88843373	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231
32197	chr18	+	726	5	ISM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	46	5222	46	-5222	5prime_fragment	FALSE	canonical	3	1800	junction_4	119.593059999316	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTATTTATACTTGGTGG	NA	False	NA	NA	False	NA	NA	NA	67908090	67920441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225
32198	chr18	+	1150	1	NIC	ENSMUSG00000079614.5	novel	3542	9	NA	NA	12648	-3821	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCACATCCTGGCAGTAG	NA	False	NA	NA	False	NA	NA	NA	67920692	67921842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_67920700_67921800
32199	chr17	+	2384	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	-6	-2	-6	2	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	313	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTGGCTGGCATAGTC	NA	False	NA	NA	False	NA	NA	NA	33184781	33198209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
32200	chr18	+	2327	12	ISM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	36493	56021	7954	-56021	internal_fragment	FALSE	canonical	3	162	junction_10	15.2092838111986	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAATTTGGGGCTCTTT	4456	False	NA	NA	False	NA	NA	NA	75188348	75364014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060
32201	chr4	-	4418	19	Intergenic	novelGene_1927	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	128	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCTAGGAAATAAAGGAACAA	NA	False	NA	NA	False	NA	NA	NA	109244720	109169501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_109169565_109170072_109170203_109173047_109173102_109178324_109178520_109179261_109179379_109181337_109181420_109186886_109186973_109200478_109200549_109218361_109218519_109218863_109219065_109220375_109220577_109223328_109223434_109223611_109223733_109227737_109227875_109230418_109230486_109235455_109235535_109237059_109237224_109239979_109240164_109242515
32205	chr12	-	2391	9	NIC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	2	-210	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	78.6733754201509	2	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTCTGTCTTTGATTT	NA	False	NA	NA	False	NA	NA	NA	32000218	31976462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31987616_31987759_31990276_31990506_31993827_31994012_32000194
32207	chr3	+	2527	17	NNC	ENSMUSG00000027774.17	novel	4078	18	NA	NA	0	202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	194.817181929623	12	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGACTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	67337448	67382339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376948_67380795_67380999_67382051
32208	chr17	+	1441	10	NNC	ENSMUSG00000068039.14	novel	1902	11	NA	NA	0	-110	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1456.10254353323	3	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTCACTCTGGAGCCCT	NA	False	NA	NA	False	NA	NA	NA	13135328	13143333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139682_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
32210	chr9	+	2212	10	FSM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	-3	330	-3	-3	multi-exon	FALSE	canonical	3	99	junction_1	15.5737988261228	831	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCATTTCCTAACTGGGT	NA	False	NA	NA	False	NA	NA	NA	46194302	46210078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
32211	chr10	+	2401	6	NNC	ENSMUSG00000061759.16	novel	2429	5	NA	NA	-14	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	87.8990329867172	458	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTCTCACTGGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	4382605	4405137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4382712_4384827_4384934_4389491_4389737_4398308_4398424_4400646_4400810_4403471
32212	chrX	+	2141	2	Antisense	novelGene_ENSMUSG00000083367.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	103	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCAACTGCCTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	79576480	79578815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_79578416_79578609
32213	chr1	+	1516	5	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	78	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	497.371779959418	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTCTGGCTGTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	172327889	172334943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_172328110_172332686_172332895_172333327_172333503_172333752_172333856_172334133
32214	chr7	-	2184	14	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	380.26540093457	1	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	4364	False	NA	NA	False	NA	NA	NA	143095512	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143074125_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089473_143089634_143089777_143091953_143092054_143093924_143093984_143095484
32216	chr8	-	2887	6	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	25	-4	intron_retention	FALSE	canonical	3	78	junction_5	15.1261363209512	48	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAACTATTCATTGCTAT	NA	False	NA	NA	False	NA	NA	NA	27713831	27687495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27690373_27690749_27690932_27692399_27692680_27713715
32217	chr18	-	1738	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	33	1531	33	-1531	multi-exon	FALSE	canonical	3	1260	junction_1	0	3773	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGTTGTTCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	37777224	37775074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
32219	chr3	-	1469	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	217.717962306997	2010	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	6108	False	NA	NA	False	NA	NA	NA	153618638	153612927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
32222	chr1	+	4533	21	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	68348	1	3737	-1	3prime_fragment	FALSE	canonical	3	256	junction_12	24.3238052121785	106	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGCATTCCTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	87849356	87872211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87849404_87851793_87851934_87852201_87852287_87853415_87853511_87853594_87853695_87853772_87854047_87854587_87854747_87855406_87855533_87857462_87857560_87859653_87859765_87861827_87861925_87862115_87862224_87863059_87863174_87864005_87864141_87864470_87864623_87865875_87865988_87866067_87866161_87866917_87867038_87867898_87868029_87869090_87869222_87870104
32223	chr1	+	1984	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	6	8	-5	-7	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	134	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCACCTTTGCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	171097903	171104460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
32224	chr13	-	3643	9	FSM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	493	123	493	-123	multi-exon	FALSE	canonical	3	91	junction_5	9.45300878027732	86	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTTTGTATAATTTTA	NA	False	NA	NA	False	NA	NA	NA	94421844	94337940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94421727
32227	chr10	-	1580	6	Antisense	novelGene_ENSMUSG00000060904.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGGCCGGGACTCGGC	3841	False	NA	NA	False	NA	NA	NA	88579916	88567389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_88567426_88569403_88569543_88571759_88571840_88572950_88573063_88577766_88577947_88578883
32229	chr7	-	2463	14	FSM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	10	1670	-2	8	multi-exon	FALSE	canonical	3	1363	junction_5	136.704319631521	343	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCACCTCCTCTGCCT	5158	False	NA	NA	False	NA	NA	NA	19398948	19367165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
32230	chr11	+	1802	10	Intergenic	novelGene_2375	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAGCGCAGCCTGGTCC	NA	False	NA	NA	False	NA	NA	NA	60679729	60702093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_60680111_60683776_60683901_60685664_60685782_60688351_60688559_60689413_60689504_60692255_60692414_60692740_60692856_60695086_60695229_60697764_60697868_60701728
32231	chr8	+	1994	11	NIC	ENSMUSG00000003808.19	novel	1920	12	NA	NA	2	-7	intron_retention	FALSE	canonical	3	583	junction_4	53.3037522131416	24	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGGACTCTGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	85583619	85595878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85591182_85594005_85594091_85594177_85594548_85594637_85594716_85594852_85594968_85595494
32232	chr11	-	2872	16	NNC	ENSMUSG00000051378.11	novel	3326	16	NA	NA	1	-434	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	82.0250368281945	1	50	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTAAACGTGTGGCTGT	3725	False	NA	NA	False	NA	NA	NA	102815949	102796788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102797126_102797363_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815808
32234	chr12	+	1974	9	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-8	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	117.447594696528	48	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACAGGGCTCCGGGATCT	NA	False	NA	NA	False	NA	NA	NA	85157658	85180856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85179492
32235	chrX	+	1873	9	NNC	ENSMUSG00000031349.5	novel	2168	8	NA	NA	27	-382	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	165.544131200716	1061	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAGACTCTGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	71962189	72001738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_71962300_71965375_71965490_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
32236	chr1	-	1734	13	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTAAGAATTCTGGGAA	NA	False	NA	NA	False	NA	NA	NA	59750647	59724138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729722_59731495_59731547_59735134_59735257_59737479_59737630_59743281_59743366_59743777_59743908_59744749_59744914_59745789_59745926_59746160_59746222_59748159_59748293_59749650_59749812_59750429
32237	chr7	+	2595	13	Antisense	novelGene_ENSMUSG00000078762.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTTCCCGCACTCTCTT	NA	False	NA	NA	False	NA	NA	NA	30353163	30364379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30353728_30356373_30356503_30356585_30356698_30357022_30357343_30357926_30358090_30358276_30358415_30358491_30359025_30359520_30359601_30359682_30359753_30361052_30361216_30361294_30361420_30362636_30362710_30364254
32238	chr2	+	1569	3	FSM	ENSMUSG00000038900.18	ENSMUST00000134912.7	2863	3	-6	1300	-6	0	multi-exon	FALSE	canonical	3	6045	junction_1	239	63	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32852135_32852585_32852685_32852996
32239	chr9	-	690	2	Antisense	novelGene_ENSMUSG00000032478.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATCCTCCTGGTCACCA	NA	False	NA	NA	False	NA	NA	NA	109662861	109661864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_109661955_109662261
32240	chr7	-	1919	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	166	42	-15	-36	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGTTGAAATACAAATAAA	8850	False	NA	NA	False	NA	NA	NA	141941609	141929689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
32241	chrX	-	1397	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-603	-44	603	mono-exon	FALSE	NA	NA	NA	NA	NA	16	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTCTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	68649895	68648498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68648500_68649900
32242	chr9	+	2854	10	FSM	ENSMUSG00000034563.17	ENSMUST00000140675.8	2839	10	-19	4	0	-4	multi-exon	FALSE	canonical	3	12	junction_9	64.8245495335079	11	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAATTCTAGAGTTGCCA	NA	False	NA	NA	False	NA	NA	NA	72892867	72923616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613_72922712_72923179
32243	chr14	-	1240	8	NNC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1545.27442909811	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAACTGTCTCCAAAATA	8756	False	NA	NA	False	NA	NA	NA	52341454	52312257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321789_52341390
32244	chr11	+	2142	5	NIC	ENSMUSG00000020708.13	novel	1394	10	NA	NA	29	0	intron_retention	FALSE	canonical	3	2464	junction_1	127.350647819318	9	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4565	False	NA	NA	False	NA	NA	NA	106147008	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147041_106147673_106147746_106151678_106153518_106153622_106153710_106153834
32245	chr8	-	4309	30	FSM	ENSMUSG00000038102.16	ENSMUST00000039061.15	4332	30	8	15	8	-1	multi-exon	FALSE	canonical	3	87	junction_18	20.4181612288351	160	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCTGTCGTAAATACCT	4062	False	NA	NA	False	NA	NA	NA	47986494	47943164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
32247	chr10	+	2402	1	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-20	-1019	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	71	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTATTCTCTTCGGTAT	867	False	NA	NA	False	NA	NA	NA	79695463	79697865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79695500_79697900
32248	chr2	+	1479	5	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-11	-10	intron_retention	FALSE	canonical	3	2861	junction_1	913.21164031127	77	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATCTTGACTGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	26800817	26803320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26803070_26803176
32249	chr16	-	1440	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	141	1385	120	-1385	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGCAAAATGCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	38272924	38265776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
32250	chr8	-	1641	7	NIC	ENSMUSG00000031708.18	novel	1272	13	NA	NA	-665	-2	intron_retention	FALSE	canonical	3	3555	junction_3	242.532242988203	4	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACCCAACTGACTGTGTG	NA	False	NA	NA	False	NA	NA	NA	84300547	84298335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299576_84299656_84299773_84299848_84299953_84300039
32251	chr11	+	2996	18	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_5	39.946937122477	3	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	NA	False	NA	NA	NA	96941642	96959730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96947120_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
32252	chr7	+	1881	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	-2	2	-2	-1	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	976	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTCTGCCCATCTTCC	NA	False	NA	NA	False	NA	NA	NA	34611801	34744131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
32253	chr15	+	3345	27	NNC	ENSMUSG00000023007.16	novel	2619	25	NA	NA	7	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	52.2052730339032	42	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTATAACATGATCTACA	NA	False	NA	NA	False	NA	NA	NA	99193131	99214878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99193155_99199667_99199866_99201156_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213363_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
32254	chr8	+	2809	22	NNC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	-6	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	198.390325087781	8	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCTATTACCTGTT	NA	False	NA	NA	False	NA	NA	NA	108163041	108283834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108278807_108279069_108280600_108280735_108281064_108281206_108281612_108281727_108282045_108282151_108283092_108283190_108283343_108283417_108283518
32255	chr17	-	3633	10	FSM	ENSMUSG00000023994.14	ENSMUST00000046719.14	3645	10	19	-7	4	0	multi-exon	TRUE	canonical	3	12	junction_8	14.7832070227182	183	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGGATTTTTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	48716774	48693916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
32257	chr9	+	1994	11	ISM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	671	-5	602	-1	3prime_fragment	FALSE	canonical	3	217	junction_8	150.386202824594	303	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTTATAGTTTGTAT	9789	False	NA	NA	False	NA	NA	NA	15218226	15228271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
32258	chr2	+	2313	12	NIC	ENSMUSG00000027282.18	novel	2596	13	NA	NA	-18	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	750.113743441069	5	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACCATGCTTAGCCTGC	154	False	NA	NA	False	NA	NA	NA	90677556	90696981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
32260	chr6	+	1840	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	57	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	617.707702360555	1	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAAAACACGCTGGC	3000	False	NA	NA	False	NA	NA	NA	122286014	122294624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286073_122290246_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286_122294529_122294590
32262	chr2	-	3082	18	NNC	ENSMUSG00000006800.15	novel	4580	21	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	297.232308107142	5	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAAAAGGCTATCTTGGG	NA	False	NA	NA	False	NA	NA	NA	165997576	165915843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923465_165927698_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997422
32263	chr10	+	3102	18	NNC	ENSMUSG00000036875.16	novel	4122	21	NA	NA	7099	-63	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	91.4479071558414	1	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAGTTACATTTAAACA	NA	False	NA	NA	False	NA	NA	NA	62789987	62809483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_62790109_62791092_62791225_62792708_62792929_62793831_62793947_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554_62805738_62807622_62807770_62809029
32264	chr4	-	1699	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	365.285465183574	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2503	False	NA	NA	False	NA	NA	NA	129229152	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129211440_129211555_129211658_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
32266	chr2	+	2991	21	NNC	ENSMUSG00000002455.15	novel	3054	21	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	101.151309927257	1	94	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	2560	False	NA	NA	False	NA	NA	NA	181243177	181297454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181243325_181249912_181250082_181257769_181257889_181262359_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
32267	chr5	-	2671	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	31	0	31	0	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	1238	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	34817461	34795879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
32268	chr10	+	2430	4	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-1074	618	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	54.9201440477191	333	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	NA	False	NA	NA	NA	95728230	95733737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95729296_95729415_95729528_95730062_95730152_95732573
32269	chr12	-	4011	12	ISM	ENSMUSG00000021182.17	ENSMUST00000068411.5	7542	30	90036	0	6153	0	3prime_fragment	FALSE	canonical	3	67	junction_4	28.3648018408568	131	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCCCTGGTTTTCTTCA	2926	False	NA	NA	False	NA	NA	NA	100905279	100877781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100889438_100889628_100895085_100895325_100896773_100896864_100898026_100898173_100899417_100899605_100901884_100902029_100904088_100904367_100905255
32270	chrX	-	1283	2	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	9391	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGAGACTGTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	149767577	149766135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766903
32271	chr10	-	2171	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-157	-1	-58	1	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	377	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGACTTCTCTCTGC	1079	False	NA	NA	False	NA	NA	NA	76797779	76597689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
32274	chr9	+	3177	3	ISM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	6015	0	6015	0	3prime_fragment	FALSE	canonical	3	606	junction_2	5.5	1	107	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGCCTTCACAGTT	NA	False	NA	NA	False	NA	NA	NA	114566255	114578412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114566428_114569126_114569226_114575506
32275	chr9	-	2696	17	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	20	-256	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	135.414583317307	1	75	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCACACTGTTGAAGATT	NA	False	NA	NA	False	NA	NA	NA	53159333	53010190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53115389_53115831_53118765_53118855_53120988_53121077_53124535_53124621_53134951_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149343_53149479_53151776_53151838_53159117
32276	chr11	-	3543	11	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	74	-134	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_8	270.947614863095	1	192	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAAAGAAACTTCATT	NA	False	NA	NA	False	NA	NA	NA	88755338	88721751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730571_88731994_88732129_88735084_88736692_88755222
32277	chr18	+	2726	17	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-309	-1	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_6	16.5481069536669	9	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATTGGTGATCTTTCTCC	NA	False	NA	NA	False	NA	NA	NA	21194670	21233255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
32278	chr16	+	3431	14	Antisense	novelGene_ENSMUSG00000022536.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	122	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACCGCCGCCGCACGGG	NA	False	NA	NA	False	NA	NA	NA	4832525	4867717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_4833470_4836268_4836389_4836703_4837316_4838132_4838235_4839203_4839305_4844366_4844471_4847196_4847272_4847365_4848106_4849750_4849837_4854098_4854340_4854782_4854925_4865597_4865678_4866613_4866643_4867662
32279	chr1	-	2641	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	205	-665	0	665	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	771	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTCACTCACCGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	16689508	16639340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
32280	chr12	-	3171	5	NNC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	1079	1969	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	352.116458007859	8	37	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAACACGTCCACTTTGA	NA	False	NA	NA	False	NA	NA	NA	85870207	85860252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85870122
32281	chr11	-	2421	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	10	-264	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	425.815131191409	1	90	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATCCACATAGTGGGGTC	NA	False	NA	NA	False	NA	NA	NA	75239109	75191439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191786_75191952_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
32282	chr5	+	3535	10	Intergenic	novelGene_731	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	177	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTACTGCGGCGGCGCGC	NA	False	NA	NA	False	NA	NA	NA	77061182	77099064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_77063253_77063790_77063911_77065878_77066103_77067217_77067348_77067603_77067755_77069316_77069392_77070060_77070202_77070297_77070413_77073520_77073731_77098765
32283	chr17	+	2023	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	19	513	-9	23	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	333	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCCTTTCAAAGTTTTA	6939	False	NA	NA	False	NA	NA	NA	25992768	26001793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
32284	chr4	+	3076	12	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	4	-4	intron_retention	FALSE	canonical	3	99	junction_1	28.8280740119709	3	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTGTGGCAGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	115696423	115736443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732743_115733777_115733822_115735146
32285	chr14	+	2729	3	NNC	ENSMUSG00000025290.18	novel	2769	4	NA	NA	605	3	intron_retention	FALSE	non_canonical	0	0	junction_2	6188	3	115	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCTACACGTCTGCTC	NA	False	NA	NA	False	NA	NA	NA	24541821	24545916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_24541884_24541974_24542176_24543450
32286	chr4	+	3331	13	NNC	ENSMUSG00000034042.17	novel	3588	12	NA	NA	55	-5	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	89.5750383756546	23	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTACATTTTTTTTACTGA	NA	False	NA	NA	False	NA	NA	NA	116414909	116451074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116415026_116426360_116427077_116427273_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
32287	chr1	-	1808	11	ISM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	11218	3	-2404	0	3prime_fragment	FALSE	canonical	3	2842	junction_6	265.968813961336	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	4835	False	NA	NA	False	NA	NA	NA	128276183	128259329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105
32288	chr15	-	2676	15	NIC	ENSMUSG00000023169.16	novel	3183	16	NA	NA	446	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	151.320109404547	7	24	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACAATGGTTTGTTTCCC	NA	False	NA	NA	False	NA	NA	NA	96539397	96473869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96538934
32290	chr9	+	2064	11	ISM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	84	11	0	-11	intron_retention	FALSE	canonical	3	651	junction_3	29.3468908063529	716	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTAGCCCCCTGTGGCCTT	NA	False	NA	NA	False	NA	NA	NA	107464924	107470226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474
32291	chr18	+	2632	1	Antisense	novelGene_ENSMUSG00000051316.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGCTCCGTCAGAGCG	6166	False	NA	NA	False	NA	NA	NA	37774581	37777213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_37774600_37777200
32293	chr1	-	2255	7	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	1828	262	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	152.006578804998	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCTCCAACTCTTC	NA	False	NA	NA	False	NA	NA	NA	13195559	13183418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13185999_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389
32294	chr7	-	3234	12	ISM	ENSMUSG00000054808.16	ENSMUST00000217157.2	3530	22	9	6581	9	-1616	5prime_fragment	FALSE	canonical	3	997	junction_4	164.137616117675	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAAAACTTGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	28661756	28599660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
32295	chr3	-	2662	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	24	0	24	0	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	1011	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	138195252	138164716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
32296	chr15	-	1503	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	194	46	67	-46	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTTCCATGATGTCT	225	False	NA	NA	False	NA	NA	NA	98832252	98829351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
32297	chr6	-	1409	9	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3169.61909186262	3	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAATTGTGTAATTATAG	NA	False	NA	NA	False	NA	NA	NA	51446828	51439745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441098_51443141_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51446650
32298	chr11	+	5447	31	ISM	ENSMUSG00000025583.16	ENSMUST00000026671.13	6594	34	121994	5	69199	-5	3prime_fragment	TRUE	canonical	3	92	junction_11	16.4547865376613	120	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGATGTCGCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	119615968	119790228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_119615995_119634692_119634840_119647064_119647241_119671368_119671429_119689594_119689696_119690147_119690293_119702770_119702847_119707903_119708006_119712486_119712571_119713736_119713848_119734507_119734583_119737183_119737250_119737578_119737771_119742152_119742294_119747092_119747211_119748138_119748280_119748661_119748821_119756377_119756497_119762320_119762425_119763041_119763226_119764979_119765091_119775749_119775856_119777862_119777978_119779367_119779493_119781939_119782045_119783377_119783485_119785081_119785210_119785744_119785832_119786728_119786846_119787245_119787376_119788239
32299	chr11	-	4073	8	NNC	ENSMUSG00000001036.18	novel	4207	9	NA	NA	-371	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	146.592591064835	1	235	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTGGGTTTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	61437739	61408078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61410534_61412484_61412692_61413231_61413319_61413854_61414020_61423343_61423515_61424396_61424508_61426096_61426210_61436975
32300	chr18	+	2193	19	NIC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	5	0	intron_retention	FALSE	non_canonical	0	0	junction_13	172.019136532344	1382	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	NA	False	NA	NA	NA	36877735	36890688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
32302	chr7	-	2786	17	NIC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-13	-2	intron_retention	FALSE	canonical	3	272	junction_4	30.5955853637416	101	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTATAGTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	27055392	27041559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27041970_27042070_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
32303	chr10	+	1092	5	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	3048.74912874116	104	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81013952_81017339_81017460_81017722
32304	chr8	+	2661	22	NNC	ENSMUSG00000032939.15	novel	2928	23	NA	NA	5962	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	338.861184697113	2	101	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTAAACATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	94947195	95041477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041223
32305	chr2	+	2756	7	NIC	ENSMUSG00000026999.15	novel	1559	9	NA	NA	34	202	intron_retention	FALSE	canonical	2	5	junction_5	112.050583815228	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGAGTCTTAAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	80469209	80489452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80486292_80487698_80488664
32307	chr16	-	1548	5	Antisense	novelGene_ENSMUSG00000022721.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCGAGTATGGTGTGGAAC	2363	False	NA	NA	False	NA	NA	NA	18071366	18069038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18069133_18069220_18069337_18069410_18069520_18069984_18070112_18070264
32308	chr10	-	1512	9	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	1806.70099905878	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959890	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90956486_90956635_90957783_90957906_90959419_90959569_90959777
32309	chr19	-	2862	3	ISM	ENSMUSG00000092274.4	ENSMUST00000174829.2	1030	4	-219	-1373	0	-1	intron_retention	FALSE	canonical	3	5	junction_2	6	296	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCTTAGAATTGTCATG	10001	False	NA	NA	False	NA	NA	NA	5895506	5892335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5894463_5894605_5894787_5894952
32311	chr7	+	3584	4	ISM	ENSMUSG00000066979.7	ENSMUST00000207442.2	3414	6	2123	66	2123	-66	3prime_fragment	FALSE	canonical	3	1325	junction_3	75.42914261448	3	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTGTTTGTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	131164561	131172827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_131165215_131167921_131168081_131169912_131170091_131170233
32312	chrX	+	3395	10	NIC	ENSMUSG00000025261.19	novel	14168	81	NA	NA	-754	-912	intron_retention	FALSE	canonical	3	472	junction_3	67.2871128490111	3	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTGTGTCCCAGCTGCC	NA	False	NA	NA	False	NA	NA	NA	150706499	150717501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_150707758_150710626_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
32313	chr4	+	3113	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	-43	9	-42	-9	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	2	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGACTAGCCTTGTTTGCGT	NA	False	NA	NA	False	NA	NA	NA	99603858	99651688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
32314	chrX	+	3148	14	NNC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_13	92.3614587003391	13	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTAACAGTATTTCCAG	NA	False	NA	NA	False	NA	NA	NA	70258650	70358889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70357254
32316	chr6	-	2327	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	37	35	-29	-35	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	1	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAATTTAAACTTTAAAA	8927	False	NA	NA	False	NA	NA	NA	47790327	47773109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
32317	chr17	-	2559	6	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	1	1833	multi-exon	FALSE	canonical	3	16	junction_5	63.4078859448886	9	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGTGGCTCATGTTGGG	NA	False	NA	NA	False	NA	NA	NA	37292108	37278253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37279193_37279355_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37292031
32319	chr11	-	1588	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCGACTCTTGTAAATCT	5980	False	NA	NA	False	NA	NA	NA	120655211	120653623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120653600_120655200
32321	chr1	+	2418	9	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	264.044710939265	1	92	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4878120	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878726_4898832_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
32323	chr6	-	1269	1	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGGACAGACTGGGTTA	6391	False	NA	NA	False	NA	NA	NA	67261020	67259751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67259800_67261000
32324	chr6	+	2320	5	FSM	ENSMUSG00000023505.14	ENSMUST00000134637.8	1917	5	-665	262	23	-262	multi-exon	FALSE	canonical	3	695	junction_1	91.4969261778777	140	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAATGATGCTTTAAG	697	False	NA	NA	False	NA	NA	NA	124806532	124810233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124809403_124809528_124809633_124809947
32325	chr4	+	3042	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	0	1	0	-1	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	150	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAATGTGTCTTGTCTAA	3781	False	NA	NA	False	NA	NA	NA	150939529	150953343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
32326	chr2	+	2333	9	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-35	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	421.672858979565	1	81	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTAACTTGTGTGTTTA	8628	False	NA	NA	False	NA	NA	NA	72306561	72317228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314338_72314942_72315093_72315519_72315657_72316063
32327	chr4	-	1372	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	798.476950199566	3	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093371_41093839_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
32328	chr10	+	2989	11	FSM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	32	3	14	-3	multi-exon	TRUE	canonical	3	170	junction_2	11.5134703716994	156	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCCCCTGACTTCTAT	NA	False	NA	NA	False	NA	NA	NA	52109746	52197469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
32329	chr3	+	4407	22	FSM	ENSMUSG00000015522.19	ENSMUST00000102749.11	2699	22	-35	-1673	-35	0	multi-exon	FALSE	canonical	0	0	junction_11	68.4937059524599	298	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	NA	NA	NA	95341663	95404551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
32330	chr17	+	2332	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	-17	-1	-17	1	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	378	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGACTCTTGTTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	80434882	80492531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
32331	chr5	+	1560	2	Genic_Genomic	ENSMUSG00000070697.5	novel	1629	1	NA	NA	-4	-4	multi-exon	TRUE	canonical	0	0	junction_1	0	25	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGTTTGTAATACC	NA	False	NA	NA	False	NA	NA	NA	88702316	88703945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_88702953_88703021
32332	chr15	-	4804	5	NNC	ENSMUSG00000041935.11	novel	767	5	NA	NA	47	-105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.043424213295	1	298	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATGCCGGTGTTTCCTA	5893	False	NA	NA	False	NA	NA	NA	4021513	4011621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_4015962_4018078_4018188_4019036_4019169_4021199_4021342_4021432
32333	chr12	-	331	2	ISM	ENSMUSG00000044573.17	ENSMUST00000218696.2	499	4	-2	8756	-2	-167	5prime_fragment	FALSE	canonical	3	1491	junction_1	0	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACATTGCACGGCAGGT	NA	False	NA	NA	False	NA	NA	NA	30961564	30954886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_30955142_30961488
32334	chr9	+	3610	12	ISM	ENSMUSG00000032394.7	ENSMUST00000034961.6	3146	14	36218	-1147	-3331	1147	3prime_fragment	FALSE	canonical	3	39	junction_9	23.4552501655936	64	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAAAGTGAACAGTGAGG	2190	False	NA	NA	False	NA	NA	NA	65084688	65094301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091114_65091194_65091314_65091523_65092415
32335	chr1	-	920	5	ISM	ENSMUSG00000013593.13	ENSMUST00000111318.8	1545	12	8	3665	8	2	5prime_fragment	FALSE	canonical	3	1142	junction_4	102.928373153373	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTGAGACAGAACTCGAC	NA	False	NA	NA	False	NA	NA	NA	171074683	171066086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
32336	chr7	+	2288	10	NNC	ENSMUSG00000030867.8	novel	2199	10	NA	NA	10	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	363.872620501484	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACATCTCTCTCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	121758671	121769086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_121759174_121759758_121759928_121760729_121760984_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
32338	chr16	-	3570	2	NNC	ENSMUSG00000097621.2	novel	2010	2	NA	NA	18	-381	intron_retention	FALSE	canonical	0	0	junction_1	0	10	63	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGTTTTTTTGCTTAG	NA	False	NA	NA	False	NA	NA	NA	30024679	30020108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30020146_30021146
32339	chr4	-	1239	7	FSM	ENSMUSG00000028822.12	ENSMUST00000105863.2	719	7	19	-539	19	-3	multi-exon	FALSE	canonical	3	28	junction_6	233.0748568355	2743	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTCTTTCTCGTTATAC	NA	False	NA	NA	False	NA	NA	NA	134642307	134625162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640573_134642199
32341	chr6	+	2188	2	Genic_Genomic	ENSMUSG00000037827.6	novel	1479	1	NA	NA	-45	706	multi-exon	FALSE	canonical	0	0	junction_1	0	39	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128621830	128624060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_128622599_128622640
32342	chr13	-	3240	5	NIC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	20	0	intron_retention	FALSE	canonical	3	139	junction_4	11.5974135047432	8	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	NA	NA	NA	91955804	91944651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_91945374_91946941_91948823_91948984_91949136_91953869_91954280_91955728
32343	chr12	-	4816	26	FSM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	-7	-2	-7	2	multi-exon	TRUE	canonical	3	41	junction_10	9.02405673741029	58	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGATGCGTCTGTTAA	6145	False	NA	NA	False	NA	NA	NA	91351190	90965263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336835_91336971_91348421_91348563_91351007
32345	chr17	+	1226	3	Fusion	ENSMUSG00000072761.11_ENSMUSG00000116564.2	novel	526	4	NA	NA	28	-11301	multi-exon	FALSE	canonical	0	0	junction_1	1.5	18	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAAATCAGTCAAACGTAA	NA	False	NA	NA	False	NA	NA	NA	17514732	17594623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_17514852_17590167_17590371_17593719
32346	chr7	+	1931	9	Antisense	novelGene_ENSMUSG00000030605.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	54	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTCACCTGCAACCACA	182	False	NA	NA	False	NA	NA	NA	78783537	78795483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_78784293_78784397_78784556_78786410_78786592_78791393_78791537_78792148_78792301_78792614_78792799_78793026_78793140_78794996_78795124_78795365
32348	chr1	+	3020	18	Antisense	novelGene_ENSMUSG00000041303.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	46	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCTGTAGGACGCCTAG	NA	False	NA	NA	False	NA	NA	NA	54436735	54478123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_54437161_54438286_54438440_54442668_54442802_54444142_54444329_54444994_54445234_54455042_54455177_54455878_54455979_54456812_54457021_54458541_54458719_54459554_54459663_54462661_54462730_54463164_54463315_54466557_54466725_54467920_54468107_54469650_54469781_54473207_54473397_54476989_54477105_54477971
32349	chr8	-	1720	9	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	10	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	269.453584824919	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	NA	False	NA	NA	NA	31658781	31649490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654776_31656395_31656467_31656550_31656661_31656737_31656788_31658692
32350	chr6	+	2527	12	NIC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	-44	131	intron_retention	FALSE	canonical	3	738	junction_2	60.6531937935289	2	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTTGTTCAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	124640090	124681111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
32351	chr5	-	2421	16	NNC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	566.959939795867	1	83	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGAAGTGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	122959370	122925789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122930081_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
32352	chr17	+	2228	2	Antisense	novelGene_ENSMUSG00000024039.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGAGCCACCATGTGGT	NA	False	NA	NA	False	NA	NA	NA	31831617	31833887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_31831916_31831957
32353	chr11	-	2533	9	NIC	ENSMUSG00000018537.17	novel	2347	10	NA	NA	-22	-2	intron_retention	FALSE	canonical	3	83	junction_8	45.6529024268994	13	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGCCTGTGGTTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	97590429	97579650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
32354	chr11	+	1524	4	FSM	ENSMUSG00000020328.11	ENSMUST00000127382.2	727	4	-301	-496	-22	0	multi-exon	FALSE	canonical	3	70	junction_2	523.696052644619	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	40624471	40630873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_40624982_40626844_40626894_40627394_40627472_40629985
32355	chr2	-	3175	8	NNC	ENSMUSG00000008999.8	novel	3670	7	NA	NA	25	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.366304729277	237	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTGTCCGACCCATGT	NA	False	NA	NA	False	NA	NA	NA	172781860	172709819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172710913_172711138_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
32356	chr2	-	3557	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	-16	10	-16	-9	multi-exon	FALSE	canonical	3	217	junction_4	20.2170445141937	241	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTCATAGCTTCCTATT	NA	False	NA	NA	False	NA	NA	NA	91540937	91504972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
32357	chr6	-	1448	9	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3359.87525810111	11	16	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446819	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51443521_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
32358	chr1	-	3091	11	Antisense	novelGene_ENSMUSG00000116048.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	172	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGTTGCTAAAATAAGATT	8197	False	NA	NA	False	NA	NA	NA	93437454	93418885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_93418995_93423293_93423386_93425060_93425152_93426706_93426868_93426993_93427112_93428178_93428276_93429223_93429375_93431156_93431238_93433259_93433324_93434686_93434787_93435427
32360	chr7	+	2688	5	NIC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	-5	-153	intron_retention	FALSE	canonical	3	1229	junction_2	43.0776914423231	6	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGGGGTGACACCATCA	NA	False	NA	NA	False	NA	NA	NA	15832527	15848987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15847115_15847274
32361	chr9	-	2282	15	Antisense	novelGene_ENSMUSG00000032604.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	65	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGGGCCTCATCTGAA	NA	False	NA	NA	False	NA	NA	NA	108391402	108385256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108385408_108385585_108385729_108386074_108386184_108386348_108386428_108386639_108386705_108387292_108387354_108387490_108387546_108388335_108388407_108388526_108388614_108388726_108388816_108389679_108389976_108390056_108390166_108390262_108390394_108390482_108391177_108391260
32362	chr7	-	1355	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	-2	-152	-2	152	multi-exon	TRUE	canonical	3	2548	junction_6	196.061655709387	225	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTATGTAGACTGGCT	NA	False	NA	NA	False	NA	NA	NA	113875355	113863688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
32363	chr1	+	1778	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-11	-549	-11	549	mono-exon	FALSE	NA	NA	NA	NA	NA	3	68	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	60743079	60744857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743100_60744900
32364	chr15	-	978	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	127	638	0	-638	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGCCTGCTTTGAGCCAG	158	False	NA	NA	False	NA	NA	NA	98832319	98829943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
32365	chr1	-	4908	9	NNC	ENSMUSG00000033557.18	novel	4532	9	NA	NA	311	-13	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_8	63.7945922473057	82	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTGTATAATGTCTTC	NA	False	NA	NA	False	NA	NA	NA	156546331	156506114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_156509213_156513760_156513821_156514925_156515118_156518046_156518219_156526296_156526407_156529968_156530056_156533237_156533738_156544457_156544551_156545735
32366	chr1	-	1452	5	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-15	3	intron_retention	FALSE	canonical	3	5452	junction_4	653.288603911013	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAAATGTGTCGGAGTC	NA	False	NA	NA	False	NA	NA	NA	16174641	16171526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173909_16174588
32367	chr4	+	2267	7	NNC	ENSMUSG00000028737.16	novel	4142	15	NA	NA	18760	0	intron_retention	FALSE	canonical	3	14	junction_1	86.9471423081607	15	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATATTTTGATCGTGTGT	5572	False	NA	NA	False	NA	NA	NA	139369179	139376998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_139369278_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
32368	chr4	+	3899	1	ISM	ENSMUSG00000001985.10	ENSMUST00000030676.8	8973	16	219540	35	219540	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	63	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAATTTTAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	125604032	125607931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_125604000_125607900
32369	chr4	+	2338	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	25	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	191.193398305369	1	84	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGAACTGTGTTCGCTTT	NA	False	NA	NA	False	NA	NA	NA	124923809	124949170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937513_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
32370	chr10	+	1717	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	38	161	5	-42	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	35	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAGAGTATTTAAAGTT	NA	False	NA	NA	False	NA	NA	NA	127919179	127926099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
32371	chr4	-	1977	7	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	682.342146987533	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTGAGCCTGAAGGTTA	NA	False	NA	NA	False	NA	NA	NA	137085028	137047014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137047152_137047271_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
32372	chr18	-	2346	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	15	-1342	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	338.962475799313	1	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGATGATTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	35065045	35037179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047058_35047229_35064621_35064726_35064886
32373	chr10	+	2257	1	Antisense	novelGene_ENSMUSG00000062866.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	71	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTACTTTCTAGAAGTGC	NA	False	NA	NA	False	NA	NA	NA	13083471	13085728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_13083500_13085700
32374	chr9	+	3014	6	FSM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	224	5623	224	29	multi-exon	FALSE	canonical	3	240	junction_5	55.0694107468021	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATAGCCCCAATGTTT	NA	False	NA	NA	False	NA	NA	NA	30942165	30981558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_30942255_30964535_30965610_30973336_30973422_30975474_30975639_30977954_30978039_30980040
32375	chr19	+	1923	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	-42	1	-2	0	multi-exon	FALSE	canonical	3	184	junction_1	53.9897109539298	585	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	3758290	3767880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
32376	chr7	+	4077	30	NNC	ENSMUSG00000034867.17	novel	4284	29	NA	NA	23	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	99.094725217808	1	143	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGATTGTGTCGTGCCATT	NA	False	NA	NA	False	NA	NA	NA	35285724	35338645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301855_35302006_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311892_35311981_35313879_35314008_35314452_35314536_35315308_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438_35337710_35337808
32377	chr5	-	1814	4	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	-43	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.287183481998	1185	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTGTGCTTCATTTAG	NA	False	NA	NA	False	NA	NA	NA	116560966	116546552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116546814_116546855_116547550_116553465_116553530_116560171
32378	SIRV3	-	1571	2	NNC	SIRV3B	novel	479	3	NA	NA	-5611	-970	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTATCCAAGTATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	7593	1970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_-_2005_6056
32379	chr12	-	4697	24	NNC	ENSMUSG00000061533.17	novel	4807	26	NA	NA	-7	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	24.2282779370685	1	116	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATTCCTTTATAAGAAC	6145	False	NA	NA	False	NA	NA	NA	91351190	90965284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989264_91050442_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256413_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314414_91315523_91315651_91333116_91333279_91336835_91336971_91348421_91348563_91351007
32380	chr14	-	1677	12	NNC	ENSMUSG00000021814.18	novel	2727	13	NA	NA	7	356	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	343.80440816601	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAATTCTGTTTAATGTTA	8210	False	NA	NA	False	NA	NA	NA	20529969	20506240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20517962_20521435_20521641_20523342_20523398_20529847
32381	chr3	+	2008	13	NIC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	7	-2	intron_retention	FALSE	canonical	3	1252	junction_8	70.0499821556009	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGGGCTTTTGGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	90383470	90395268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
32383	chr3	+	3900	13	FSM	ENSMUSG00000049504.13	ENSMUST00000058577.5	4472	13	563	9	297	-9	multi-exon	FALSE	canonical	3	36	junction_11	9.75071222469871	83	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGGATATCACAAACTATAG	NA	False	NA	NA	False	NA	NA	NA	53371649	53389167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_53371741_53374522_53374589_53376901_53376971_53377693_53377789_53378844_53378939_53379396_53379508_53380904_53380989_53382108_53382188_53382735_53382832_53383077_53383123_53384903_53386588_53386980_53387132_53387932
32385	chr13	-	2901	11	NIC	ENSMUSG00000034928.17	novel	4292	11	NA	NA	22	-838	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	247.622616091503	3	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTACTGTATATAACTC	NA	False	NA	NA	False	NA	NA	NA	54836048	54828064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831964_54832150_54832302_54835984
32387	chr18	-	1678	1	Intergenic	novelGene_4524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAAGCAAGCTTTCTTTC	7438	False	NA	NA	False	NA	NA	NA	34879940	34878262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_34878300_34879900
32388	chr7	-	2322	6	ISM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	4013	4	-2385	-4	3prime_fragment	FALSE	canonical	3	90	junction_4	11.805083650699	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACTCCATTGTCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	19651072	19637506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798
32389	chr18	-	1092	5	Intergenic	novelGene_4579	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGGAAGCAGGCGAAGAT	NA	False	NA	NA	False	NA	NA	NA	84978610	84953149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_84953306_84975444_84975553_84976393_84976500_84977191_84977432_84978128
32390	chr4	-	4330	6	ISM	ENSMUSG00000029050.16	ENSMUST00000129314.2	4521	7	27351	140	27351	-140	3prime_fragment	FALSE	canonical	3	209	junction_5	27.874002224295	120	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	155245402	155238671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_155241987_155242402_155242634_155243744_155244038_155244152_155244416_155245036_155245153_155245290
32391	chr2	-	1315	8	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-27	-944	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4472.16761122134	4	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAAACTTGATTCCTGG	3709	False	NA	NA	False	NA	NA	NA	154734778	154714281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719637_154726230_154726367_154729623_154729728_154730102_154730281_154734609
32392	chr1	-	4949	23	FSM	ENSMUSG00000026479.14	ENSMUST00000185356.7	4916	23	-50	17	-50	-17	multi-exon	FALSE	canonical	3	71	junction_14	15.8534090501821	171	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTAGATGCTGGGGCT	NA	False	NA	NA	False	NA	NA	NA	153061843	152998518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_153000030_153002561_153002662_153002751_153002911_153004702_153004903_153005781_153005897_153006395_153006546_153007568_153007714_153009344_153009495_153010522_153010603_153012443_153012650_153012936_153013100_153015471_153015618_153017271_153017518_153019471_153019655_153020259_153020479_153021384_153021498_153024673_153024864_153026489_153026613_153027782_153027920_153030137_153030237_153034597_153034734_153041864_153042054_153061654
32395	chr5	-	1957	13	NIC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	-34	0	combination_of_known_splicesites	TRUE	canonical	3	9	junction_1	163.420788661255	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTCTTTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	22755336	22691482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_22692216_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
32396	chr8	-	2446	13	FSM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	54	-686	1	682	multi-exon	FALSE	canonical	3	157	junction_3	25.0593739391514	38	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTCTGTGTTGCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	106578632	106570622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
32397	chr8	+	938	1	NIC	ENSMUSG00000031629.15	novel	2931	13	NA	NA	-206	-1649	mono-exon	FALSE	NA	NA	NA	NA	NA	5	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTGTGAGACATCCTC	NA	False	NA	NA	False	NA	NA	NA	47012905	47013843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_47012900_47013800
32398	chrX	+	1902	12	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-6	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	886.624800685207	2	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543391	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556479_161557563_161557626_161558731_161558790_161560767_161560879_161561343
32399	chr9	+	1310	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-12	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6160.20075630857	4	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGGTGACAAACCCTTGT	NA	False	NA	NA	False	NA	NA	NA	64080644	64085788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082578_64082940_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
32400	chr16	+	2611	8	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-63	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	313.689954820205	2	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	38384487	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38384576_38393450_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38407742_38408544_38408666_38411273
32402	chr9	+	2101	17	NIC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	-13	-4	intron_retention	FALSE	canonical	3	461	junction_11	123.212706705721	759	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACATTGTGTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	21914300	21925512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924232_21924311_21924463_21925207
32403	chr7	-	1430	9	FSM	ENSMUSG00000030697.8	ENSMUST00000032936.8	1359	9	-71	0	-71	0	multi-exon	FALSE	canonical	3	1828	junction_8	282.244574792856	3224	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	4999	False	NA	NA	False	NA	NA	NA	126391739	126385037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
32404	chr7	-	2687	13	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	3108	-7070	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	117	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATCAATAGAAAGCCAT	NA	False	NA	NA	False	NA	NA	NA	79965843	79950046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79950180_79950782_79950904_79954109_79954328_79954423_79954598_79955663_79955815_79956121_79956268_79957303_79957441_79959138_79959232_79960485_79960634_79960815_79960935_79961970_79962065_79962776_79962914_79964827
32405	chr15	+	1686	12	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-28	237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	244.379159409552	24	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCTAAACTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	101982179	102003871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999884_102003448_102003485_102003687
32406	chr2	-	3410	3	NIC	ENSMUSG00000017307.17	novel	1017	5	NA	NA	25	-25	intron_retention	FALSE	canonical	3	55	junction_2	148	6	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAAGAGATTGCTAACA	8192	False	NA	NA	False	NA	NA	NA	164646776	164634712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164637730_164641639_164641866_164646609
32407	chr3	-	2343	18	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	4	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	154.548589239715	2	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCAAGGCTGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	95662191	95647294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658885_95660318_95660443_95661630_95661828_95662069
32408	chr8	+	2015	9	NNC	ENSMUSG00000031799.11	novel	2158	8	NA	NA	11	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	247.613988902081	30	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGCATAAATAATGTGTC	NA	False	NA	NA	False	NA	NA	NA	72889112	72906970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585_72906221_72906307
32410	chr11	+	3725	27	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	50	-22	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	202.96016457021	231	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTTTCGTCTTCACT	6859	False	NA	NA	False	NA	NA	NA	115714933	115746582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115715004_115723487_115723745_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
32411	chr8	-	4147	24	FSM	ENSMUSG00000031453.17	ENSMUST00000117551.4	4404	24	-13	270	-13	-268	multi-exon	FALSE	canonical	3	46	junction_3	7.20402114134286	73	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGGAGTGGTTTGGATT	NA	False	NA	NA	False	NA	NA	NA	13727616	13617217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_13618767_13620238_13620423_13626336_13626441_13627359_13627569_13627806_13627890_13628607_13628715_13630033_13630108_13631250_13631329_13632298_13632377_13633749_13633857_13634912_13635037_13635673_13635749_13636873_13636989_13637951_13638101_13638863_13639021_13640201_13640307_13642003_13642081_13645334_13645408_13645808_13645890_13648213_13648291_13655861_13655957_13664533_13664638_13681774_13681893_13727392
32412	chr14	+	3960	1	NIC	ENSMUSG00000021900.11	novel	2324	4	NA	NA	23178	-385	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	88	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATACTGGCTGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	31386191	31390151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_31386200_31390200
32413	chr17	+	3026	7	NIC	ENSMUSG00000014767.18	novel	12794	8	NA	NA	-4	-4	intron_retention	FALSE	canonical	3	150	junction_1	71.5860011144327	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTGTTTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	15720179	15737685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15735973_15736965
32414	chr7	-	1694	10	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-68	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	666.687666335927	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTCTATTGGTGTGCTCT	8797	False	NA	NA	False	NA	NA	NA	141941662	141929654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141929768_141930080_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
32415	chr7	+	2109	6	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	-6	-3	intron_retention	FALSE	canonical	3	107	junction_4	29.3434830925028	466	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	629	False	NA	NA	False	NA	NA	NA	101872269	101887771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885762_101886328_101886438_101886607
32416	chr15	+	1715	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	-280	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	423.486422450591	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513534	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514892_100515833_100516052_100517248_100517510_100517570
32417	chr15	-	2541	7	ISM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	19884	364	19647	-364	3prime_fragment	FALSE	canonical	3	690	junction_2	37.7245131034039	11	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	51835259	51825999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141
32418	chr6	+	1413	6	NNC	ENSMUSG00000067338.7	novel	1775	5	NA	NA	263	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	497.632555205143	46	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGACATTTGCTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	145561745	145567199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565174_145565266_145565590_145566816
32419	chr7	+	1632	3	NIC	ENSMUSG00000006333.15	novel	751	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	8457	junction_1	3263	128	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1311	False	NA	NA	False	NA	NA	NA	3707038	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3707768_3708731
32420	chr11	+	1330	4	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	420	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16695.733912856	163	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAAGGTTTGTGTCCCT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443353_62443486_62443755_62443876
32422	chr19	+	2269	12	NNC	ENSMUSG00000015176.12	novel	2978	13	NA	NA	29	61	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	343.212653641783	1	92	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGCAAAACAACACATGG	98	False	NA	NA	False	NA	NA	NA	46064521	46072961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067211_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
32423	chr13	+	1797	8	NIC	ENSMUSG00000038683.17	novel	1757	9	NA	NA	34	0	intron_retention	FALSE	canonical	3	613	junction_2	42.0810685050964	7	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAGCTTAATTACATTT	NA	False	NA	NA	False	NA	NA	NA	41154775	41166489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_41154890_41158212_41158376_41161491_41161762_41162361_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
32424	chr11	-	3622	20	NNC	ENSMUSG00000020752.12	novel	3971	19	NA	NA	-16	-3	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_19	18.5488797998223	115	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATCTTTTCTTGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	115824319	115783423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115783985_115784085_115784156_115784320_115784546_115784772_115784864_115785032_115785545_115785821_115785957_115786240_115786335_115786593_115786668_115786749_115786809_115786924_115786962_115787601_115787702_115787866_115788086_115807804_115807885_115813991_115814155_115816232_115816345_115818154_115818261_115818793_115819313_115821502_115821625_115823614_115823745_115824106
32426	chr11	-	2413	12	NNC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	10	0	intron_retention	FALSE	canonical	0	0	junction_9	324.864523575114	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	96807230	96798641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96803222_96803831_96803881_96804207_96804408_96804490_96804623_96806976_96807023_96807209
32427	chr12	+	3103	3	NNC	ENSMUSG00000020668.11	novel	6791	8	NA	NA	2003	20240	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGCTCGATGCGGAGACA	2372	False	NA	6	True	NA	NA	NA	3454066	3476734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3456711_3457699_3457925_3476500
32428	chr4	+	2429	8	FSM	ENSMUSG00000028673.11	ENSMUST00000030434.5	2525	8	12	84	12	-84	multi-exon	FALSE	canonical	3	268	junction_1	34.7786000351964	854	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGCCAAATTATTTCTA	NA	False	NA	NA	False	NA	NA	NA	135648057	135667538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384
32429	chr9	+	2190	6	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	47	168	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7855.73330504543	2	58	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATAAACTATTAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	64080721	64085720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082240_64084258_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
32430	chr5	-	2820	8	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-16	-11	intron_retention	FALSE	canonical	3	230	junction_2	366.343599170316	1	112	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATAAAATCTCAGTTA	NA	False	NA	NA	False	NA	NA	NA	100186770	100181446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100182844_100183493_100183599_100183962_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
32433	chr16	-	2257	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	85	5	-51	-5	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	330	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCGACATGGAATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	91394603	91371395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
32436	chr2	+	3650	15	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	18	-13	intron_retention	FALSE	non_canonical	0	0	junction_5	122.537124736855	1	101	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATGGAAGCCATATGTG	NA	False	NA	NA	False	NA	NA	NA	128942964	128968501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951148_128952132_128954561_128954734_128955420_128955643_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133_128967476_128968287
32437	chr9	+	1464	12	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1786.817305335	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAACTGTGTTGTCCTTC	NA	False	NA	NA	False	NA	NA	NA	108765768	108778685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771254_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
32438	chr5	+	2873	5	NNC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	320.090905056673	152	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTTTGTTTCTGTT	785	False	NA	NA	False	NA	NA	NA	129792591	129799620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979_129795815_129797824
32439	chr1	-	3925	18	NIC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	-81	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_17	11.4532297011906	55	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGCTCCTTGGATGTC	NA	False	NA	NA	False	NA	NA	NA	14374933	14239181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14374796
32440	chr11	+	2690	10	NIC	ENSMUSG00000025156.18	novel	1843	14	NA	NA	0	1	intron_retention	TRUE	canonical	3	121	junction_4	337.743163431097	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	1391	False	NA	NA	False	NA	NA	NA	120675097	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120675169_120675946_120676040_120676525_120677514_120677597_120677676_120677837_120677896_120678205_120678618_120678701_120678808_120678887_120679208_120679287_120679423_120679495
32441	chr3	-	3152	31	NIC	ENSMUSG00000027855.14	novel	3189	33	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	35	junction_30	18.8657243580933	147	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTCATTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	102843416	102725811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
32442	chr17	-	3359	10	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	0	-4	intron_retention	FALSE	canonical	3	131	junction_6	91.1336015602002	2	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAAGGCTTAATTTCTT	5833	False	NA	NA	False	NA	NA	NA	46593925	46568806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
32444	chr4	+	2123	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	44	12	-27	-12	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	2042	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGACCTGTACTTACTT	-24	True	NA	NA	False	NA	NA	NA	46489291	46503620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
32445	chr4	+	3100	6	NIC	ENSMUSG00000028419.6	novel	1519	8	NA	NA	148	-3	intron_retention	FALSE	canonical	3	527	junction_4	44.445922197655	4	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTAATTGTAGTATCGC	-8	True	NA	NA	False	NA	NA	NA	40948554	40965300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
32447	chr2	+	1615	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	7	-1521	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	47.0063573693612	2	14	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATCAAGGTTAGATTTA	NA	False	NA	NA	False	NA	NA	NA	152068839	152122251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152121039_152122027
32448	chr4	-	1592	11	NIC	ENSMUSG00000028409.12	novel	2418	12	NA	NA	0	-575	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	388.074168168921	29	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAGTGCTCATAAGGGG	-27	True	NA	NA	False	NA	NA	NA	40757883	40737116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40757776
32449	chr7	+	4145	22	Antisense	novelGene_ENSMUSG00000037519.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	11	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGCACAGCCCTATGGC	NA	False	NA	NA	False	NA	NA	NA	144030498	144073106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_144031733_144032769_144032832_144034818_144034987_144035446_144035516_144035995_144036173_144038580_144038681_144038771_144038946_144045188_144045390_144045478_144045557_144052028_144052128_144052443_144052617_144053988_144054144_144058642_144058871_144059806_144060031_144061864_144062002_144064018_144064096_144064606_144064674_144066982_144067114_144068176_144068261_144069721_144069857_144071333_144071486_144072886
32454	chr4	+	2897	6	NNC	ENSMUSG00000028974.14	novel	2457	6	NA	NA	43	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.7608139294157	43	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGCCTTTGTTTGTCAG	NA	False	NA	NA	False	NA	NA	NA	149188645	149205106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202588_149203261
32456	chr1	-	3278	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	6	9	6	-9	multi-exon	TRUE	canonical	3	57	junction_1	6.25316246521123	121	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTGAAGCTGCCTTAAG	692	False	NA	NA	False	NA	NA	NA	53824377	53794673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
32458	chr1	+	2052	6	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	4541	junction_5	417.061338414387	59	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAACTGTGAAGTGTGC	NA	False	NA	NA	False	NA	NA	NA	160862735	160866102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863585_160863777_160863815_160864118_160865118_160865564_160865608_160865794_160865843_160866026
32459	chr5	+	2728	14	NNC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	32.3005486607733	234	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	NA	NA	NA	146168083	146239684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_146168185_146168443_146168631_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
32460	chr16	-	3272	16	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	431.37701994118	1	153	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTATCATTGTACCCAAA	8116	False	NA	NA	False	NA	NA	NA	4867721	4831766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838135_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867672
32461	chr9	-	3080	7	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	57.8234861933761	21	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATGTGATTCATGAG	-25	True	NA	NA	False	NA	NA	NA	7837063	7818228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
32462	chr18	+	5573	10	FSM	ENSMUSG00000042439.14	ENSMUST00000235493.2	5358	10	163	-378	63	-9	multi-exon	FALSE	canonical	1	1	junction_1	25.9648385226285	2	203	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTCTGGCCCTTGAGCT	NA	False	NA	NA	False	NA	NA	NA	65713515	65821995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_65713582_65715967_65716078_65756054_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032
32463	chr11	+	2301	11	NIC	ENSMUSG00000001100.11	novel	2054	11	NA	NA	86	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	336.48014800282	45	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAGTATTGTTCTTAA	1721	False	NA	NA	False	NA	NA	NA	78403104	78413562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78403632_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
32465	chr19	-	2585	5	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	89	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGCATACTCGTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	10607173	10602571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10602695_10603258_10604125_10604487_10605229_10605788_10605910_10606439
32466	chr5	+	3193	12	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	65844	0	65837	0	3prime_fragment	FALSE	canonical	3	43	junction_2	8.40306909693916	118	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	4621	False	NA	NA	False	NA	NA	NA	129239657	129281663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
32467	chr9	-	1703	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	229	0	146	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110774997	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
32468	chr7	-	4913	6	FSM	ENSMUSG00000030509.18	ENSMUST00000124899.8	4928	6	3	12	3	-12	multi-exon	FALSE	canonical	3	23	junction_2	20.3273215156351	63	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTTAAAAAAAATACTGAAT	NA	False	NA	NA	False	NA	NA	NA	66339341	66294324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_66297674_66309397_66310004_66328827_66329090_66331452_66331557_66338570_66338669_66338847
32469	chr6	-	2150	4	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-26	2172	multi-exon	FALSE	non_canonical	0	0	junction_1	207.889393668845	1	58	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGGCTGGAAAAATGGC	NA	False	NA	NA	False	NA	NA	NA	48502050	48499315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_48500391_48500868_48501767_48501821_48501909_48501960
32470	chr17	-	3764	13	NNC	ENSMUSG00000056133.6	novel	2649	10	NA	NA	-21151	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	5.15522927607385	60	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACGTCTTGCCCAAATAT	NA	False	NA	NA	False	NA	NA	NA	7674014	7630213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7631457_7637075_7637208_7637754_7637891_7639195_7639414_7641821_7641948_7643808_7644039_7644334_7644517_7646602_7646748_7646972_7647027_7664386_7664816_7667713_7667920_7671756_7671826_7673420
32472	chr6	-	1749	7	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-4	-265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.385579403125	11	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	120893768	120870079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120871010_120871138_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
32474	chr4	+	5198	3	FSM	ENSMUSG00000039634.13	ENSMUST00000107696.2	2965	3	33	-2266	33	2266	multi-exon	FALSE	canonical	3	41	junction_2	6.5	65	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTGACATAAAGACAGTT	-6	True	NA	NA	False	NA	NA	NA	49521249	49533783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_49521596_49522397_49522483_49529016
32475	chr10	+	2278	5	NNC	ENSMUSG00000061759.16	novel	2429	5	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	80.5927260985754	1	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCTCACTGGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	4382612	4405138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4382712_4384827_4384934_4389491_4389735_4400646_4400810_4403471
32476	chr7	+	601	1	Genic_Genomic	ENSMUSG00000025510.15	novel	NA	NA	NA	NA	498	8	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTGCTGACAGGACCT	2769	False	NA	NA	False	NA	NA	NA	141050793	141051394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_141050800_141051400
32477	chr18	+	1931	7	NNC	ENSMUSG00000025421.16	novel	5477	7	NA	NA	20	-1479	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	160.071598563476	19	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTGCGTATGATGTGCC	NA	False	NA	NA	False	NA	NA	NA	77031859	77057622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77056399
32478	chrX	+	1531	9	Antisense	novelGene_ENSMUSG00000057836.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGATATAATGTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	72129983	72140653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72130791_72130883_72130980_72133005_72133105_72134464_72134567_72135381_72135500_72136877_72136910_72137787_72137861_72138553_72138695_72140590
32479	chr10	-	2496	15	NNC	ENSMUSG00000020079.16	novel	2519	15	NA	NA	15	-17	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	117.820513788507	405	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTTGAGGTTTTACTC	NA	False	NA	NA	False	NA	NA	NA	62285447	62265004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270357_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279157_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
32480	chr2	-	2009	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-14	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	128.876724042784	2	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAAAAACTGACCATTTC	NA	False	NA	NA	False	NA	NA	NA	73044691	72923157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972294_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
32481	chr13	+	1803	2	ISM	ENSMUSG00000047789.6	ENSMUST00000052514.6	8910	15	67272	6698	-7572	-6692	3prime_fragment	FALSE	canonical	3	57	junction_1	0	2	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCAAAGCTCAACTGTC	NA	False	NA	NA	False	NA	NA	NA	112864571	112868585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_112865822_112868032
32483	chr9	-	1819	6	Antisense	novelGene_ENSMUSG00000062867.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCCGTCCGGACCGC	NA	False	NA	NA	False	NA	NA	NA	108441150	108437667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108437825_108438226_108438281_108438794_108439578_108439988_108440078_108440333_108440709_108440789
32485	chr16	+	2662	8	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	64.3415630420483	193	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGTCTCTAGTTATTG	NA	False	NA	NA	False	NA	NA	NA	3702519	3722632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3702671_3712232_3712349_3713377_3713665_3715114_3715245_3717735_3717833_3718506_3718744_3719648_3719990_3721329
32486	chr7	+	2798	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	-4	1233	-4	-113	multi-exon	FALSE	canonical	3	270	junction_1	341	1	98	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATATATATATATTTTA	267	False	NA	NA	False	NA	NA	NA	3339095	3347725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3339318_3341727_3341816_3345237
32488	chr6	-	3110	13	NNC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	-7	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.6903368879471	8	64	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATACTAGAGTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	112673654	112603386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112604309_112604826_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
32489	chr2	-	2206	11	NNC	ENSMUSG00000017707.10	novel	3683	10	NA	NA	37	-1389	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.952253886333	38	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGTTTGTGTATTTG	NA	False	NA	NA	False	NA	NA	NA	163487008	163466580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163467410_163467454_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
32490	chr4	-	3027	8	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	148.807504748207	1	101	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAAGTTTTGTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	126954917	126941378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952627_126953409_126953453_126954788
32492	chr11	-	2014	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	456	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	77971209	77964201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
32493	chr4	-	3312	9	NIC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	13	-1084	intron_retention	FALSE	canonical	3	293	junction_8	56.2472221536317	33	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCATCTGTGATAGAGAA	-1	True	NA	NA	False	NA	NA	NA	58987106	58966522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_58966764_58968758_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
32494	chr8	+	1993	11	FSM	ENSMUSG00000019139.11	ENSMUST00000019283.10	1836	11	-155	-2	-47	0	multi-exon	FALSE	canonical	3	300	junction_1	49.1426495012225	946	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTGTGTGCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	71046975	71049940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
32495	chr16	+	3199	3	NNC	ENSMUSG00000021018.9	novel	689	4	NA	NA	2	-2	intron_retention	FALSE	canonical	0	0	junction_2	417	34	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTCTTCTCCATTGTC	1071	False	NA	NA	False	NA	NA	NA	20536581	20541012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20536745_20537573_20538405_20538807
32496	chr15	-	1843	9	NNC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	10183.9546929226	2	82	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962621_79962932_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
32497	chr12	-	1053	1	Intergenic	novelGene_4312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACCAAGGTCTGTGAG	6607	False	NA	NA	False	NA	NA	NA	21777898	21776845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_21776800_21777900
32498	chr6	+	2199	6	Fusion	ENSMUSG00000090576.3_ENSMUSG00000030103.12	novel	3113	5	NA	NA	-1293	486	multi-exon	FALSE	canonical	1	2	junction_1	97.2575961043661	1	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCAAAGTACACAGAGCT	NA	False	NA	NA	False	NA	NA	NA	108636296	108643112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_+_108636375_108637807_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
32499	chr3	+	3695	7	NIC	ENSMUSG00000027680.16	novel	2127	15	NA	NA	-3	2026	intron_retention	FALSE	canonical	3	1060	junction_5	102.413649263931	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTACCTTCTTAAAGATAC	4853	False	NA	NA	False	NA	NA	NA	34074250	34105290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34095306_34100180_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223
32500	chr7	-	2256	7	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	1	281	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	897.784201365909	1	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTCAAGTAAAGTCACAAAT	NA	False	NA	NA	False	NA	NA	NA	117728782	117717832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117718499_117718591_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
32501	chr16	-	1887	13	Antisense	novelGene_ENSMUSG00000116795.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	19	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCAGCCACTCGCCGTGAG	NA	False	NA	NA	False	NA	NA	NA	36728254	36695523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_36695620_36705365_36705549_36706489_36706591_36707600_36707762_36707914_36708067_36709731_36709854_36711725_36711852_36713674_36713798_36715189_36715310_36718868_36719268_36720817_36720934_36724912_36725029_36728182
32502	chr11	+	1241	4	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-1	-274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4366.69793881932	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAAATATATCATGCCTC	3082	False	NA	NA	False	NA	NA	NA	75623785	75656397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623793_75647704_75647850_75650117_75650255_75655445
32503	chr17	+	1859	16	ISM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	10601	1139	-9739	-86	3prime_fragment	FALSE	canonical	3	1341	junction_5	112.751920407395	1	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACTTTCTGCAATGTACT	NA	False	NA	NA	False	NA	NA	NA	71933810	71964887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
32504	chr3	-	3510	7	NIC	ENSMUSG00000027752.16	novel	2316	8	NA	NA	4	0	intron_retention	FALSE	canonical	3	1645	junction_6	206.888657655916	22	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	NA	False	NA	NA	NA	54642463	54636102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54636722_54637185_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
32506	chr8	-	2690	13	NNC	ENSMUSG00000031696.10	novel	3474	17	NA	NA	-11927	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	545.981532044201	1	131	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGGATTATCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	86013059	85987022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005477_86005597_86005686_86007864_86007975_86008476_86008554_86010621_86010836_86012969
32507	chr9	-	4560	4	Antisense	novelGene_ENSMUSG00000032594.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGATGGATGAAGGGCT	NA	False	NA	NA	False	NA	NA	NA	107925966	107901525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_107901648_107909195_107909407_107918101_107918286_107921923
32508	chr8	-	2239	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	16	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1632.82319380337	1	74	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTATGGTACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	26337706	26306909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318886_26321300_26321377_26322667_26322744_26323778_26323875_26324987_26325077_26326027_26326117_26329784_26329917_26330039_26330088_26337624
32510	chr2	-	2063	6	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	-27	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	221.551258177425	14	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534860	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75506587_75506870_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
32512	chr12	+	2673	11	NNC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	16	4	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	80.6806048564337	202	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCACCTGTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	117807638	117842445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117839888_117839990_117840640_117840778_117841201
32513	chr7	+	3030	4	NIC	ENSMUSG00000025510.15	novel	1619	7	NA	NA	-12	463	intron_retention	FALSE	canonical	3	276	junction_2	8.28653526310404	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTCGAAGCAGCGTACT	NA	False	NA	NA	False	NA	NA	NA	141047322	141050835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_141049259_141049378_141049571_141049849_141050139_141050222
32515	chr1	-	454	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	240	-40	240	40	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033523	65033069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033500
32516	chr5	+	1861	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	29	3	intron_retention	FALSE	canonical	2	4	junction_5	191.661159341166	1275	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTCATACAGACGTGTG	NA	False	NA	NA	False	NA	NA	NA	100187872	100216622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215603
32517	chr12	+	1974	2	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	15161	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAATAAGGAAAGGTCT	NA	False	NA	NA	False	NA	NA	NA	86566343	86568377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86566789_86566848
32519	chr9	+	1756	8	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	360.161755043367	2240	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGACTCTGAGTGGCTTT	622	False	NA	NA	False	NA	NA	NA	45281736	45307451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303746_45304024_45306280
32520	chr2	-	2165	11	ISM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	79	-15	58	-3	3prime_fragment	FALSE	canonical	3	299	junction_5	40.0311128998433	220	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCTCACCTATGCTCA	NA	False	NA	NA	False	NA	NA	NA	30068383	30063467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931
32523	chr2	+	3260	22	Antisense	novelGene_ENSMUSG00000027379.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	160	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCGAATTCCCCGCGCAG	NA	False	NA	NA	False	NA	NA	NA	127643104	127673757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_127643358_127644936_127645012_127646082_127646271_127646393_127646526_127646708_127646889_127647197_127647297_127648134_127648289_127649727_127649931_127650885_127650975_127652528_127652692_127654848_127654949_127656478_127656667_127656756_127656886_127658008_127658061_127659166_127659402_127661137_127661281_127663591_127663807_127665869_127665995_127669199_127669409_127671345_127671492_127671593_127671658_127673639
32524	chr4	+	1583	9	NNC	ENSMUSG00000028745.19	novel	1674	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	545.448840405771	25	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	NA	False	NA	NA	NA	138920237	139019129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007443_139007835_139007896_139014339_139014406_139015066_139015144_139018313
32525	chr2	-	2104	10	FSM	ENSMUSG00000039660.17	ENSMUST00000127309.8	2123	10	-6	25	2	-5	multi-exon	FALSE	canonical	3	299	junction_5	42.729409885181	32	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAATGAGCTCTCTAGA	NA	False	NA	NA	False	NA	NA	NA	30068460	30063489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067978_30068401
32526	chr17	-	2477	10	NNC	ENSMUSG00000023980.8	novel	2784	9	NA	NA	0	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.048605499572	9	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACTTTGTAAATGACT	NA	False	NA	NA	False	NA	NA	NA	47813212	47799227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47800478_47800526_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
32527	chr8	-	2585	4	Intergenic	novelGene_1699	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	63	junction_3	28.3901391331568	38	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCCCAATCTGTGTCCA	NA	False	NA	NA	False	NA	NA	NA	89779660	89772269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89774422_89775330_89775532_89776215_89776356_89779568
32529	chr5	-	1316	11	ISM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	109	6056	-73	163	5prime_fragment	FALSE	non_canonical	2	263	junction_10	45.4924169505204	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGGGACATGTTTCAGC	6506	False	NA	NA	False	NA	NA	NA	123858998	123842420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
32530	chr4	-	2935	22	FSM	ENSMUSG00000003644.18	ENSMUST00000003741.16	3085	22	154	-4	-56	0	multi-exon	FALSE	canonical	3	18	junction_13	262.602024229159	388	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCCGCTCTTCCTTCTGC	8131	False	NA	NA	False	NA	NA	NA	133614941	133574600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592710_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133614880
32531	chr19	+	1307	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	74	-299	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2977.50121746407	3	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTCCTGTCCTGCCT	2092	False	NA	NA	False	NA	NA	NA	8945653	8955544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954867_8954959_8955074_8955307
32532	chrX	-	2447	14	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	-3	13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	255.18003854339	1	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTGAGATGAGGGATG	NA	False	NA	NA	False	NA	NA	NA	95000495	94978927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984158_94984229_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
32534	chr7	+	2127	9	NNC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	352.085194768255	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896233_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036_43900201_43900287
32536	chr7	-	3220	22	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-14	-3	intron_retention	FALSE	non_canonical	0	0	junction_5	42.6742659048933	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCTCATGATGTAGATC	NA	False	NA	NA	False	NA	NA	NA	140697733	140681133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683903_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
32537	chr5	+	4937	28	FSM	ENSMUSG00000029577.14	ENSMUST00000074002.12	5194	28	231	26	5	-25	multi-exon	TRUE	canonical	3	241	junction_19	27.3486858419916	105	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAATTTGTACTTGAGCA	NA	False	NA	NA	False	NA	NA	NA	114518898	114559204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_114519037_114522375_114522464_114525154_114525340_114525441_114525563_114526783_114526844_114527125_114527231_114528450_114528548_114530158_114530245_114531137_114531221_114536468_114536575_114536822_114536944_114537850_114538029_114539328_114539499_114540582_114540751_114542600_114542773_114544232_114544352_114544806_114544922_114545604_114545705_114546157_114546278_114549079_114549257_114549364_114549476_114550226_114550365_114550482_114550549_114550911_114550971_114553262_114553446_114553637_114553750_114556598_114556692_114557538
32538	chr11	-	2917	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	31	2383	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.1068669888635	822	78	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGGGTGGTGTGCTTATT	2921	False	NA	NA	False	NA	NA	NA	95805686	95754385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95755692_95756848_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
32540	chr5	+	3778	14	NIC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	-3	-18	intron_retention	FALSE	canonical	3	76	junction_5	17.6618466872059	22	86	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTTGAAGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	143846839	143868242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
32541	chr7	+	3084	3	Antisense	novelGene_ENSMUSG00000030751.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGAGAATTTTCTTCTGG	NA	False	NA	NA	False	NA	NA	NA	113866869	113873104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_113869085_113869566_113870378_113873046
32542	chr11	-	2766	18	NNC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	115.88641378373	1	94	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACATTTTGTGACTGGCT	3605	False	NA	NA	False	NA	NA	NA	54846925	54801616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802398_54806322_54806403_54807617_54807814_54808078_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817622_54819938_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830548_54831541_54831709_54846846
32543	chr17	+	3065	8	Fusion	ENSMUSG00000051341.7_ENSMUSG00000057409.8	novel	3065	5	NA	NA	-2	151	multi-exon	FALSE	canonical	1	2	junction_4	67.7715249336824	13	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGGGAAAGCTTTTTAT	1473	False	NA	NA	False	NA	NA	NA	21709257	21782479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_21709528_21711487_21711579_21720472_21720565_21748201_21748329_21758834_21758933_21775246_21775338_21777396_21777524_21780310
32544	chr18	+	4843	5	Antisense	novelGene_ENSMUSG00000034320.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	51	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCAAGGCCCGCGGCGT	NA	False	NA	NA	False	NA	NA	NA	61328907	61344671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_61329195_61329235_61332728_61334749_61335475_61337380_61337517_61344468
32545	chr10	-	2160	8	Antisense	novelGene_ENSMUSG00000035754.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCGCCCCTGAATCCCA	3616	False	NA	NA	False	NA	NA	NA	79803506	79795985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79796205_79796833_79796945_79800757_79801954_79802033_79802102_79802175_79802302_79802391_79802559_79803151_79803221_79803302
32549	chr15	-	2734	15	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	8	-30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	284.622673598803	2	122	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACAAATAAACGTCATCTG	NA	False	NA	NA	False	NA	NA	NA	81614094	81588483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594772_81595691_81595760_81595842_81595943_81596222_81596337_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
32550	chrX	+	1553	6	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	-1	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	740.415018756373	6	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGATGTTCAACCTGTTG	NA	False	NA	NA	False	NA	NA	NA	74557921	74578530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566958_74574690_74574830_74577513
32551	chr19	+	1494	3	ISM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	3697	2	3544	-2	3prime_fragment	FALSE	canonical	3	5418	junction_1	175	248	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTACTGTTTGTCTTGT	7757	False	NA	NA	False	NA	NA	NA	41904058	41907097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_41904319_41905081_41905263_41906044
32552	chr3	-	3084	14	FSM	ENSMUSG00000028134.12	ENSMUST00000029780.12	3364	14	28	252	28	-252	multi-exon	FALSE	canonical	3	41	junction_1	15.6821233920295	119	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGAGGTTTGATGGTTG	NA	False	NA	NA	False	NA	NA	NA	119577009	119512642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
32553	chr1	+	3521	4	NIC	ENSMUSG00000026435.16	novel	3212	5	NA	NA	-17	-3	intron_retention	FALSE	canonical	3	24	junction_3	2.94392028877595	81	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTGATATGTGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	131890687	131910699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_131890791_131904455_131905937_131906485_131906752_131909028
32554	chr12	-	2838	9	NNC	ENSMUSG00000041645.15	novel	2850	9	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	280.319878665427	1	110	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGGGTGTTGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	103392077	103374239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392049
32555	chr1	-	1686	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	84	325	-46	-321	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTCCTCGGTACTTCC	NA	False	NA	NA	False	NA	NA	NA	135186222	135181637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
32556	chr6	-	1433	7	NIC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	-8	-7	combination_of_known_splicesites	FALSE	canonical	3	12	junction_6	326.216398865675	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAAGACTGGCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	33037180	32769165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33036934
32557	chr18	+	2164	6	NNC	ENSMUSG00000073568.3	novel	2257	5	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	115.278792498881	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGCTGGGTTTTCAGGG	NA	False	NA	NA	False	NA	NA	NA	47054878	47067288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472_47065691_47065775
32558	chr10	-	3077	7	FSM	ENSMUSG00000034781.6	ENSMUST00000043604.6	3414	7	332	5	332	-5	multi-exon	FALSE	canonical	3	370	junction_6	26.2339898266013	203	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTCCTTTGTGATTA	4555	False	NA	NA	False	NA	NA	NA	81380692	81364562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085_81369241_81370913_81371099_81380625
32559	chr4	+	1700	11	NNC	ENSMUSG00000028601.19	novel	1319	10	NA	NA	-6	-3	intron_retention	FALSE	canonical	2	8	junction_9	345.92317066077	309	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCTTGTGCTGGAATT	NA	False	NA	NA	False	NA	NA	NA	108022678	108036500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108035858_108036024_108036103
32560	chr4	+	2629	7	ISM	ENSMUSG00000028608.16	ENSMUST00000106727.10	926	9	255	-661	-1	-23	intron_retention	FALSE	canonical	1	1	junction_6	276.961890679727	26	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTGTATTTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	107747314	107754976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107752747
32561	chr15	-	1431	1	FSM	ENSMUSG00000115993.2	ENSMUST00000231103.2	490	1	-384	-557	-384	557	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGGGTCAAACATAATCT	NA	False	NA	NA	False	NA	NA	NA	93577914	93576483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_93576500_93577900
32562	chr8	-	1907	11	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	5	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	402.404572538633	2	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCAGCAGTCATGCATGC	7644	False	NA	NA	False	NA	NA	NA	41827667	41793699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41813289_41813337_41827546
32564	chr12	-	2626	14	NIC	ENSMUSG00000021240.7	novel	2581	19	NA	NA	1229	0	intron_retention	FALSE	canonical	3	177	junction_12	24.3709012636457	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84660932	84649306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84653083_84655343_84655434_84655579_84655672_84655748_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678
32565	chr3	-	3014	9	FSM	ENSMUSG00000074513.10	ENSMUST00000143514.3	1343	9	-28	-1643	-28	0	multi-exon	FALSE	canonical	3	20	junction_5	63.3733974156349	126	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	NA	False	NA	NA	NA	84489960	84403399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84436476_84436573_84441893_84442003_84455240_84455343_84489720
32566	chr7	-	1643	7	NIC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-8	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	783.01740082836	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8895	False	NA	NA	False	NA	NA	NA	141941564	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141930476_141930569_141930669_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
32567	chr6	-	2109	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	396.619728686904	1	59	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAATATTGGCATCTTGAA	1	True	NA	NA	False	NA	NA	NA	30509718	30482420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489380_30489496_30489590_30491085_30491173_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505899_30506784_30506917_30508452_30508512_30508664_30508802_30509683
32568	chr8	-	2187	13	NNC	ENSMUSG00000022322.9	novel	2156	13	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	86.3677537561843	547	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAAGCTTGTGTGAAATG	NA	False	NA	NA	False	NA	NA	NA	4829567	4785981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_4786408_4789124_4789267_4789594_4789682_4791823_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
32569	chrX	+	2407	18	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	-8353	-729	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	263.141100465749	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150811089	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150811178_150811960_150812044_150812186_150812330_150816757_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
32570	chr7	+	2632	14	ISM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	125	3966	92	537	5prime_fragment	FALSE	canonical	3	89	junction_1	52.297284032345	9	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATTTTTTTTTAAATCC	1152	False	NA	NA	False	NA	NA	NA	45084392	45102077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174
32571	chr9	+	1824	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-60	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	602.339107148125	1	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTATTCTCTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183577	108215135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192553_108204878_108204941_108208069_108208191_108212249_108212381_108213846
32572	chr7	+	2271	8	NIC	ENSMUSG00000030990.19	novel	2141	7	NA	NA	68	-3	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	75.3083457445157	2	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	101859646	101887771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101859799_101872585_101872698_101875477_101875653_101884868_101885080_101885300_101885554_101885654_101885750_101886328_101886438_101886607
32573	chrX	+	1589	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	755.657869889893	138	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCAGTTTTGGGTGTACT	NA	False	NA	NA	False	NA	NA	NA	139357373	139376883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917_139376163_139376520
32574	chr10	+	3049	11	FSM	ENSMUSG00000019952.16	ENSMUST00000159990.2	3449	11	385	15	-296	-15	multi-exon	FALSE	canonical	3	64	junction_10	9.48946784598589	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTTAAAAAGATCAAT	NA	False	NA	NA	False	NA	NA	NA	98943349	99033921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
32575	chr6	-	1245	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	229	127	87	-127	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTTTGTGGGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	124791030	124787681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
32576	chr7	+	2608	5	FSM	ENSMUSG00000099689.7	ENSMUST00000186475.2	2614	5	3	3	3	-3	multi-exon	FALSE	canonical	3	26	junction_4	3.53553390593274	243	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACACTAAGTTTCATAATT	NA	False	NA	NA	False	NA	NA	NA	29607944	29616229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29608077_29609607_29609673_29611593_29611721_29612014_29612111_29614041
32577	chr17	+	2048	15	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	16	-163	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	345.631867389426	1	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCCTAGGTCACTGGCT	NA	False	NA	NA	False	NA	NA	NA	21165764	21186004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176962_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
32579	chr1	+	516	1	Antisense	novelGene_ENSMUSG00000084106.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCAGCAGCTTCCGAGGA	NA	False	NA	NA	False	NA	NA	NA	86836483	86836999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86836500_86837000
32580	chr11	-	1961	14	NNC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	91.0721152577165	595	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAACCTCTGTATGTGGA	264	False	NA	NA	False	NA	NA	NA	61652866	61620485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61640609_61640673_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652311_61652401_61652779
32581	chr17	+	1764	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	41	11	10	-5	multi-exon	FALSE	canonical	3	697	junction_1	319.314188567323	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCAAATTGAGTGCTGGT	942	False	NA	NA	False	NA	NA	NA	24633677	24644864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
32582	chr11	+	1555	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	10	-289	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4060.57933797629	2	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCTAAATTAAAAATGCCA	3045	False	NA	NA	False	NA	NA	NA	75623748	75656382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642757_75646451_75646507_75647642_75647850_75650117_75650255_75655445
32583	chr19	-	1754	1	Antisense	novelGene_ENSMUSG00000096740.9_AS_novelGene_ENSMUSG00000071653.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCTTCACTTTGTAGCT	NA	False	NA	NA	False	NA	NA	NA	8869984	8868230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8868200_8870000
32584	chr12	+	1947	13	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	-1681	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	356.802777766965	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	3239	False	NA	NA	False	NA	NA	NA	110450490	110538122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110450715_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110537631
32585	chr4	-	1518	11	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	57	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	383.010039032921	2	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATAGCCCCATGCTGGT	2549	False	NA	NA	False	NA	NA	NA	129229106	129203314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129203808_129203951_129211440_129211552_129211654_129211713_129212236_129212248_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
32586	chr4	+	2391	10	NNC	ENSMUSG00000028696.13	novel	2118	9	NA	NA	80	3170	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	25.5255862921022	42	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTTCTTGAGGGGTAGC	NA	False	NA	NA	False	NA	NA	NA	116364828	116398610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996_116395259_116398080
32587	chr4	-	2934	8	FSM	ENSMUSG00000028878.12	ENSMUST00000097856.10	1863	8	-33	-1038	32	0	multi-exon	FALSE	canonical	3	35	junction_3	31.9367998345712	192	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	132649837	132626523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
32588	chr6	+	2189	7	FSM	ENSMUSG00000054226.14	ENSMUST00000113753.8	2222	7	31	2	12	0	multi-exon	FALSE	canonical	3	4	junction_1	87.3983536585342	365	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3440	False	NA	NA	False	NA	NA	NA	85892750	85907264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85892773_85896898_85897007_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
32589	chr3	+	825	7	Antisense	novelGene_ENSMUSG00000005779.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAACTGCCCTGGAGCCG	3984	False	NA	NA	False	NA	NA	NA	94791642	94794153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793532_94793750_94793958_94794078
32590	chr8	-	480	1	ISM	ENSMUSG00000031949.18	ENSMUST00000034427.12	3159	10	24897	18	23007	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTTGAATTAAATGTGAA	NA	False	NA	NA	False	NA	NA	NA	112694037	112693557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_112693600_112694000
32591	chr3	-	1720	1	FSM	ENSMUSG00000069008.4	ENSMUST00000091117.4	1252	1	-32	-436	-32	436	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTCTCACCTAAGGAA	NA	False	NA	NA	False	NA	NA	NA	58011700	58009980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_58010000_58011700
32592	chr11	-	1855	7	NNC	ENSMUSG00000015837.16	novel	2037	8	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	360.148773271392	5	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCTGTGATCCGTACG	NA	False	NA	NA	False	NA	NA	NA	50101618	50090981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50091775_50093225_50093422_50093640_50093834_50098020_50098129_50098233_50098464_50098647_50098744_50101379
32593	chr8	+	3660	11	NIC	ENSMUSG00000037656.10	novel	436	3	NA	NA	189	-8	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	165.224362610361	131	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAAAACTTACTTCTGAC	NA	False	NA	NA	False	NA	NA	NA	22996430	23059620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_22996671_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
32594	chr7	-	1863	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	8	4	8	-4	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	23	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTTGCTTGTCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	16121702	16060978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
32595	chr5	-	1920	13	ISM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	2357	1	1500	-1	3prime_fragment	FALSE	canonical	3	527	junction_10	42.1712777452458	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTAGCTGTGTTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	22753016	22691487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921
32597	chr3	-	3691	18	NNC	ENSMUSG00000027889.18	novel	3650	18	NA	NA	12	-2	intron_retention	FALSE	canonical	0	0	junction_4	77.8709783767766	2	84	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGAGGCATGTGAAGGT	NA	False	NA	NA	False	NA	NA	NA	107993955	107981381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107982438_107982564_107982676_107982813_107983021_107983286_107983404_107983669_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
32598	chr8	+	357	1	Intergenic	novelGene_1771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGGACAGCCAGGGCTACA	NA	False	NA	NA	False	NA	NA	NA	120072653	120073010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_120072700_120073000
32599	chr16	+	1537	4	ISM	ENSMUSG00000022779.17	ENSMUST00000231432.2	1810	5	1750	0	-637	0	3prime_fragment	FALSE	canonical	3	437	junction_1	21.483844059096	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTCTGGAACAAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	16707452	16710839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_16708126_16708445_16708547_16709218_16709421_16710278
32600	chr19	-	1840	3	NNC	ENSMUSG00000024742.16	novel	2341	2	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	416	49	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2189	False	NA	NA	False	NA	NA	NA	10181273	10176501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177432_10177773_10178462_10181051
32601	chr4	-	1851	13	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	31	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	551.639576374123	3	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	8861	False	NA	NA	False	NA	NA	NA	129436453	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410371_129411166_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
32602	chrX	-	1805	4	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1484.46091973559	2	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642033	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135635251_135636290_135636372_135640553_135640644_135641958
32603	chr11	-	2837	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-3404	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	193.35861903612	10	63	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCCGTGCGATCTT	4342	False	NA	NA	False	NA	NA	NA	113460009	113135676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113459778
32604	chr15	+	2505	12	Antisense	novelGene_ENSMUSG00000036606.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	38	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGGGCCGCGCTCTGCGT	NA	False	NA	NA	False	NA	NA	NA	89047482	89064896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89047576_89048216_89048316_89048414_89048521_89048615_89048738_89049449_89049600_89049901_89050033_89050108_89050208_89050566_89050695_89050783_89052233_89054772_89054825_89055272_89055320_89064867
32605	chr14	-	1241	7	ISM	ENSMUSG00000060373.16	ENSMUST00000164655.2	2843	8	19638	1436	13229	-14	3prime_fragment	FALSE	canonical	3	714	junction_5	1244.28900939006	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGTATGGTTTTTATCA	6614	False	NA	NA	False	NA	NA	NA	52321847	52312272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571
32606	chr3	-	3291	2	ISM	ENSMUSG00000062006.13	ENSMUST00000133802.6	711	4	2	-1489	2	-4	intron_retention	FALSE	canonical	3	8385	junction_1	0	156	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATCTACGCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	130523981	130520491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_130522501_130522699
32607	chr2	+	4475	10	NIC	ENSMUSG00000027582.17	novel	3666	11	NA	NA	8	0	intron_retention	FALSE	canonical	3	53	junction_7	40.6748625620843	112	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGCTCTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	181007205	181025421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
32608	chrX	+	1221	6	NNC	ENSMUSG00000001964.15	novel	1595	6	NA	NA	-6	-157	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	107.462737728014	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATGTTTATTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	73298409	73301336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73298540_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
32609	chr14	+	1631	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	-12	0	-12	0	multi-exon	FALSE	canonical	3	46	junction_1	100	920	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	61835683	61843395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_61835796_61837242_61837345_61841978
32611	chr7	-	4275	1	NIC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	991	117	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	130	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTTTTCCCCTTCAAA	NA	False	NA	NA	False	NA	NA	NA	125974909	125970634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125970600_125974900
32612	chr15	+	2680	10	Antisense	novelGene_ENSMUSG00000022464.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	56	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGCTTCCCAAAGAGTGG	NA	False	NA	NA	False	NA	NA	NA	96905810	96953819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96906395_96906538_96906621_96906744_96908083_96908168_96908247_96910780_96910872_96911313_96911393_96914008_96914125_96914641_96914733_96917604_96917742_96953735
32614	chr11	+	3432	1	FSM	ENSMUSG00000065534.3	ENSMUST00000083600.3	89	1	76	-3419	76	3419	mono-exon	FALSE	NA	NA	NA	NA	NA	30	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACTCTATAGAGCCGCT	1073	False	NA	NA	False	NA	NA	NA	69902944	69906376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69902900_69906400
32616	chr12	+	1415	11	NNC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	10	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	738.251691498231	11	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCACTGTAATGAGTACCA	3983	False	NA	NA	False	NA	NA	NA	100076422	100089622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083044_100085444_100085522_100086245_100086398_100087251_100087407_100089316
32617	chr11	+	2965	16	NNC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	3	1202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	350.150151918986	1	158	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCTTCATGGAAGCAGTT	NA	False	NA	NA	False	NA	NA	NA	4110357	4130621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4110551_4111045_4111160_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123222_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127627_4128086_4128226_4129140_4129243_4129353_4129426_4130033
32618	chr8	-	2692	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38818	-1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	61.5964483471214	27	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	43633341	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43584611_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
32619	chr6	-	1846	8	NIC	ENSMUSG00000048930.13	novel	2848	9	NA	NA	-13	-2	intron_retention	FALSE	canonical	3	225	junction_7	62.2332675651595	230	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTTATAAAAAAACCACCC	NA	False	NA	NA	False	NA	NA	NA	113354350	113343617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113352221_113352800_113353026_113354276
32620	chr10	-	1706	11	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	444.752335575655	10	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	85793660	85774500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779788_85783089_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
32623	chr4	-	2365	7	ISM	ENSMUSG00000037443.14	ENSMUST00000121566.8	3748	14	38218	-2	5720	2	3prime_fragment	FALSE	canonical	3	315	junction_5	62.855433779074	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTCCGGTTTCCTAG	NA	False	NA	NA	False	NA	NA	NA	133876074	133857174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919
32624	chr11	+	2088	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	10	-790	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	299.690043960388	1	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCAATTGGATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	3913984	3929214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926057_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
32625	chr10	-	2408	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	0	-2	0	2	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	2	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAGTGAATCTCTTTCA	8248	False	NA	NA	False	NA	NA	NA	128540899	128533810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
32626	chr19	+	3872	4	NIC	ENSMUSG00000060675.14	novel	3523	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	191	junction_2	16.9771087709958	382	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTGCTGTAGTCATGG	NA	False	NA	NA	False	NA	NA	NA	7534841	7565910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_7535361_7552301_7552405_7556318_7556588_7562929
32628	chr5	+	1712	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	40	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1142.51473442024	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAATATATTCTCGCTGT	796	False	NA	NA	False	NA	NA	NA	77099663	77115346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112380_77114499
32629	chr9	-	2120	4	Antisense	novelGene_ENSMUSG00000032193.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCTGATGGGACAATAAA	NA	False	NA	NA	False	NA	NA	NA	21661149	21657031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21657200_21657655_21657734_21658442_21658602_21659434
32630	chr12	+	1988	15	NNC	ENSMUSG00000017843.15	novel	1802	3	NA	NA	-417	1	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	391.393774522148	8	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGTGTATTTTCCTAT	NA	False	NA	NA	False	NA	NA	NA	110413136	110538123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110413163_110414405_110414472_110432282_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110537631
32632	SIRV4	+	1475	4	NNC	SIRV4C	novel	1567	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	485.873097286387	2	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	999	3403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV4_+_1347_1678_1886_2389_2925_3017
32633	chr9	-	1068	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6404.94330088097	855	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8134	False	NA	-46	True	NA	NA	NA	78387972	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386702_78387597_78387703_78387792
32634	chr4	-	2854	15	NNC	ENSMUSG00000028677.20	novel	3029	15	NA	NA	153	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	470.819758398009	324	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	117353993	117128660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785_117347528_117353875
32635	chr11	-	1988	13	NNC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	14	0	intron_retention	FALSE	canonical	2	9	junction_2	312.147968384654	2	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	96807308	96798641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96798949_96799055_96799194_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
32636	chr2	-	2272	10	NNC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	51	6	intron_retention	FALSE	non_canonical	0	0	junction_9	124.60287534086	37	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACCCTGATGCTCACCTA	NA	False	NA	NA	False	NA	NA	NA	30068390	30063473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067734_30067935
32637	chr18	-	2229	13	ISM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	-32	0	-32	0	intron_retention	FALSE	canonical	3	161	junction_8	19.6728450747047	451	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2760	False	NA	NA	False	NA	NA	NA	34884618	34866045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790
32638	chr10	+	2079	3	NIC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	17	0	intron_retention	FALSE	canonical	3	2420	junction_2	46.5	155	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	4517	False	NA	NA	False	NA	NA	NA	79978220	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79979820_79981052_79981142_79981256
32639	chr3	+	2206	8	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	-13	0	intron_retention	FALSE	non_canonical	0	0	junction_2	459.239655544346	2	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGATTACTGACAAAATC	NA	False	NA	NA	False	NA	NA	NA	122068023	122078898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122068128_122068846_122069690_122069903_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
32640	chr15	+	1657	2	ISM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	587	2	248	-2	3prime_fragment	FALSE	canonical	3	1292	junction_1	0	34	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATGTGGGTTTTCAGT	4732	False	NA	NA	False	NA	NA	NA	80139971	80141740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_80140723_80140834
32641	chr10	-	1850	7	Antisense	novelGene_ENSMUSG00000071072.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5410	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACGCAGCAAAATGCCCG	NA	False	NA	NA	False	NA	NA	NA	127913047	127894867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127895156_127904540_127904653_127905082_127905155_127906002_127906100_127907934_127908025_127910088_127910165_127911932
32642	chr3	+	2353	8	NIC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	44	-2	intron_retention	FALSE	canonical	3	1030	junction_1	90.175113087859	3	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCATCATGTTGAGATC	NA	False	NA	NA	False	NA	NA	NA	97066136	97083832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_97066682_97073158_97073288_97073389_97073933_97075302_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
32643	chr3	-	2746	15	Intergenic	novelGene_3105	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGTCGGGCCACGTGA	NA	False	NA	NA	False	NA	NA	NA	40654175	40594933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_40595157_40608133_40608683_40618688_40618773_40626997_40627203_40629653_40629771_40633308_40633402_40633960_40634037_40637783_40637971_40642198_40642257_40645122_40645187_40646142_40646365_40646926_40647398_40648588_40648689_40651913_40652102_40654066
32645	chrX	-	1303	1	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGTGTCTTTATAGTG	2470	False	NA	NA	False	NA	NA	NA	13070087	13068784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13068800_13070100
32646	chr2	-	3658	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109175.9	3729	28	71	0	71	0	multi-exon	FALSE	canonical	3	71	junction_27	47.3339708993171	310	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	168576188	168476357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168575940
32647	chr5	+	1519	11	NNC	ENSMUSG00000029247.18	novel	1862	10	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1308.27658008542	6	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	302	False	NA	NA	False	NA	NA	NA	77099169	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114619_77115198
32650	chr9	-	1084	1	Antisense	novelGene_ENSMUSG00000032604.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	255	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAGAAGTGAGGAAGATGG	NA	False	NA	NA	False	NA	NA	NA	108393029	108391945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108391900_108393000
32653	chr10	-	2311	17	NNC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	-13	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.925233256918	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAAGATCCTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	116385081	116321687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116322069_116322116_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373349_116384937
32654	chr5	-	1034	2	Antisense	novelGene_ENSMUSG00000079067.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGACTGTTTTTAATTC	NA	False	NA	NA	False	NA	NA	NA	84272225	84271074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_84271174_84271290
32656	chr6	+	1603	11	Antisense	novelGene_ENSMUSG00000038252.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	36	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTCACTGCTTGTTCCAA	8290	False	NA	NA	False	NA	NA	NA	125144969	125150019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_125145283_125145552_125145716_125145828_125145952_125146776_125146962_125147096_125147180_125147691_125147787_125147880_125148057_125148360_125148514_125148592_125148722_125148794_125148911_125149952
32657	chr6	-	2176	11	NNC	ENSMUSG00000086429.10	novel	551	3	NA	NA	9004	21064	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCACCGCGAGCACGCCG	1036	False	NA	NA	False	NA	NA	NA	113045134	113023324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_113023418_113024372_113024664_113026297_113026376_113027715_113027896_113032597_113033075_113036913_113037042_113040055_113040130_113042502_113042619_113043714_113043826_113044226_113044356_113044635
32658	chr19	-	3376	21	NNC	ENSMUSG00000025199.17	novel	3502	21	NA	NA	108	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_20	66.1814739938603	186	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCTCTACTCATTT	NA	False	NA	NA	False	NA	NA	NA	44095613	44061773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095546
32659	chr2	-	2416	10	NIC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	11	junction_5	120.448954405109	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATGAGCTCTCTAGACC	NA	False	NA	NA	False	NA	NA	NA	30068463	30063487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066015_30066373_30066505_30066626_30066677_30066750_30067734_30067931_30067978_30068401
32660	chr4	+	2053	12	NNC	ENSMUSG00000028683.15	novel	1555	12	NA	NA	58	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	190.138270696541	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTGGCTCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	116876662	116944045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116877240_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
32662	chr17	+	951	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	60	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1751.13484632109	56	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3096	False	NA	NA	False	NA	NA	NA	35816974	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35820973_35821464
32664	chr1	-	1936	14	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	105.020031901498	11	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	NA	False	NA	NA	NA	33708867	33492890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708734
32665	chr4	+	2009	11	ISM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	19472	1268	-12132	-5	3prime_fragment	FALSE	canonical	3	463	junction_3	108.145272665984	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTATGTTTCTTCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	40990377	41012603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
32666	chr1	-	510	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	177	-6	177	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	24654469	24653959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24654000_24654500
32667	chr3	-	1761	8	FSM	ENSMUSG00000039795.15	ENSMUST00000037839.12	1610	8	1	-152	0	152	multi-exon	FALSE	canonical	3	339	junction_1	173.164190104923	1383	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTCATTTGGTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	10416376	10404860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
32668	chr8	+	1764	3	ISM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	6	994	6	-6	intron_retention	FALSE	canonical	3	987	junction_1	5.5	2731	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAAGAACTTTGTGCG	NA	False	NA	NA	False	NA	NA	NA	72973579	72977268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_72973705_72973784_72973927_72975771
32672	chr19	-	4793	2	ISM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	2	-4	2	0	intron_retention	FALSE	canonical	3	5910	junction_1	0	21	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCTTTATTTACA	NA	False	NA	NA	False	NA	NA	NA	47079080	47071902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_47072009_47074393
32673	chr15	-	1738	9	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	112.009416456832	1311	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGAAAGTTGCTCTTGA	6879	False	NA	NA	False	NA	NA	NA	81244982	81203113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211611_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
32674	chr3	+	1788	4	NIC	ENSMUSG00000001418.14	novel	1017	5	NA	NA	-9	43	intron_retention	FALSE	canonical	3	936	junction_2	77.5127229699888	2162	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGATTTCCAGTCTCTC	4018	False	NA	NA	False	NA	NA	NA	88232352	88235931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88232509_88232983_88233937_88235163_88235421_88235509
32675	chr7	+	4277	23	Antisense	novelGene_ENSMUSG00000110087.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	72	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGGAACCTGAACCTCACA	NA	False	NA	NA	False	NA	NA	NA	46410243	46445112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_46410875_46412366_46412637_46414241_46414350_46416517_46416631_46417455_46417576_46418359_46418515_46418714_46418836_46421026_46421606_46421894_46421967_46422538_46422694_46424237_46424362_46425188_46425375_46426298_46426461_46427446_46427624_46428495_46428583_46432565_46432646_46432901_46433139_46435930_46436069_46437597_46437792_46438353_46438416_46438511_46438624_46440340_46440475_46444852
32677	chr15	-	2438	16	NNC	ENSMUSG00000023169.16	novel	6966	16	NA	NA	3752	101	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_15	116.760076890843	11	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATGCCTAAGGACGTAC	NA	False	NA	NA	False	NA	NA	NA	96536091	96473766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96536028
32678	chr2	-	2268	13	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	4	-158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	220.203488593821	1	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGGACCGTGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	103315466	103284351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285167_103285422_103285507_103287194_103287246_103290675_103290716_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
32679	chr8	+	3524	11	NNC	ENSMUSG00000015568.17	novel	1900	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	38.5031167569588	139	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAAGTCATCATTTTGTA	NA	False	NA	NA	False	NA	NA	NA	69333206	69359584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157_69357941_69358465
32680	chr13	-	4437	17	ISM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	18714	5	18714	-5	3prime_fragment	FALSE	canonical	3	179	junction_8	32.4123818933444	223	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATAAAGTATGGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	49102779	49032699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_49034572_49038748_49038846_49039212_49039355_49042599_49042738_49043230_49043415_49045356_49045567_49051135_49051251_49055533_49055784_49063731_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532
32681	chr18	-	2607	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2275.05426712581	3	154	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAACCAAAACACT	NA	False	NA	NA	False	NA	NA	NA	64649607	64632735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633719_64634373_64634506_64634816_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638223_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644859_64644949_64645054_64645121_64648396_64648480_64649486
32682	chr4	-	2583	6	NNC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-5	30	intron_retention	FALSE	non_canonical	0	0	junction_1	51.0505631702531	45	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATATGTGTATGTATA	NA	False	NA	NA	False	NA	NA	NA	129512878	129508888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129509270_129509341_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
32684	chrX	+	4473	1	ISM	ENSMUSG00000043384.16	ENSMUST00000113144.8	5843	11	56250	19	1395	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGAAAGTGAGCAGAAAT	NA	False	NA	NA	False	NA	NA	NA	134699731	134704204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_134699700_134704200
32685	chr13	+	3679	22	FSM	ENSMUSG00000041112.18	ENSMUST00000072519.7	5464	22	-47	1832	-24	-1832	multi-exon	FALSE	canonical	2	20	junction_15	9.13863990039136	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGGGGAGCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	20274741	20790691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_20274942_20369523_20369675_20392303_20392345_20393308_20393382_20425742_20425794_20435173_20435344_20445726_20445763_20458689_20458790_20464981_20465134_20467081_20467161_20470889_20470941_20472060_20472184_20474531_20474664_20526537_20526643_20557251_20557361_20633639_20633777_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
32687	chr2	+	3947	13	NNC	ENSMUSG00000026803.18	novel	4160	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	11.9745099644574	137	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTGTGAAATGACTTGAA	NA	False	NA	NA	False	NA	NA	NA	28950273	28977668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_28950316_28954630_28955921_28957014_28957242_28959903_28960090_28961309_28961389_28963900_28964032_28964585_28964821_28969400_28969491_28971023_28971090_28973544_28973631_28974648_28974827_28976118_28976918_28977130
32688	chr2	-	1378	3	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	684.5	13	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	NA	False	NA	NA	NA	25114668	25112175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25113392_25114205_25114245_25114545
32691	chrX	+	1816	4	NIC	ENSMUSG00000008682.14	novel	762	6	NA	NA	0	-7	intron_retention	FALSE	canonical	3	2920	junction_1	3064.32907284232	152	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTTATGTTTTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	73314462	73316734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73314481_73314584_73315325_73315405_73315514_73315784
32692	chr1	-	2509	8	NIC	ENSMUSG00000026577.14	novel	3948	9	NA	NA	-12	207	combination_of_known_junctions	FALSE	canonical	3	5	junction_5	77.1767121478959	188	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTTGTGGTTAGTGCC	NA	False	NA	NA	False	NA	NA	NA	164134853	164118750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164131416_164131494_164134007_164134086_164134715
32693	chr19	+	4007	13	NIC	ENSMUSG00000024985.21	novel	2318	15	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_3	30.4944211655546	61	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAAGGCTGGCCGCTTGC	NA	False	NA	NA	False	NA	NA	NA	55730304	55922085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55743445_55743515_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
32694	chr18	-	2203	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	54	-1360	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	428.924282362284	1	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTGGAACCAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	35065006	35037197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043262_35043310_35046606_35046747_35047052_35047229_35064621_35064726_35064886
32696	chr8	-	3325	7	NIC	ENSMUSG00000038515.11	novel	1416	8	NA	NA	20	-3	intron_retention	FALSE	canonical	3	341	junction_1	31.7669464835525	5	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTGTTCTCCATTTTTTC	3742	False	NA	NA	False	NA	NA	NA	13250515	13226924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
32697	chr11	+	3435	4	NIC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	600	1	intron_retention	FALSE	canonical	3	997	junction_1	63.6448479192673	1	158	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	2234	False	NA	NA	False	NA	NA	NA	120675940	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120677676_120677834_120677896_120678205_120679208_120679287
32699	chr7	-	2749	5	NNC	ENSMUSG00000066838.8	novel	2777	5	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.5942259885761	93	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATGACTATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	7212967	7205115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_7207361_7208511_7208599_7209244_7209372_7210523_7210563_7212716
32700	chr16	-	3585	17	NNC	ENSMUSG00000033581.18	novel	3899	16	NA	NA	-15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	419.843492975359	2	150	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTGGTGTCTTGGTGTC	2538	False	NA	NA	False	NA	NA	NA	21981784	21877760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894762_21894896_21897365_21897502_21898233_21898357_21898816_21898869_21898913_21898952_21900489_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
32701	chr19	+	3020	7	NNC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	-5	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	440.37887728132	6	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGTACTGATCCTGGACCT	970	False	NA	NA	False	NA	NA	NA	8713197	8717978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8713270_8713350_8713902_8714110_8715619_8716629_8716731_8716810_8717329_8717459_8717517_8717765
32702	chrX	+	2836	9	NIC	ENSMUSG00000000134.18	novel	2943	10	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_4	121.408144290241	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	7630167	7641438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7630238_7631745_7631860_7632793_7633095_7633677_7633924_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
32703	chr16	-	1763	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	202	0	29	0	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	2787	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCTGAATTTCTCCGA	9030	False	NA	NA	False	NA	NA	NA	91525661	91486209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
32704	chr12	+	2735	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	-8	2265	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	214.20317457965	606	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCGCTGATTTCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	76812320	76832219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
32705	chr15	-	2169	16	NNC	ENSMUSG00000022466.7	novel	2271	17	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	84.6661417306562	617	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTATAAGGGTCGATATT	NA	False	NA	NA	False	NA	NA	NA	97603713	97572983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594527_97598948_97599093_97601082_97601251_97603630
32706	chr19	-	2399	21	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	512.619690901549	3	93	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	5132	False	NA	NA	False	NA	NA	NA	53026999	52979613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990979_52991109_52991138_52992190_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001929_53003037_53003106_53013689_53013815_53020439_53020529_53026944
32707	chr4	+	3113	8	ISM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	10	10	3	-10	intron_retention	FALSE	canonical	3	309	junction_6	50.1267780487737	5	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAACACAACTTCTGATTC	NA	False	NA	NA	False	NA	NA	NA	83335970	83371567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441
32708	chr11	-	2652	1	NIC	ENSMUSG00000006057.16	novel	4715	5	NA	NA	-18	1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	63	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGCCTGTCT	3512	False	NA	NA	False	NA	NA	NA	95966463	95963811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95963800_95966500
32711	chr4	+	4711	13	FSM	ENSMUSG00000032998.17	ENSMUST00000044564.15	4789	13	78	0	32	0	multi-exon	FALSE	canonical	3	55	junction_6	28.6078611962206	146	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCAGCCTGATGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	119396935	119486316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_119397043_119417799_119417861_119430672_119430998_119442946_119443022_119459605_119459690_119467186_119467289_119473704_119473834_119476480_119476662_119477131_119477546_119478797_119478900_119480417_119480610_119482093_119482202_119483485
32712	chr9	+	1653	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	2290.32768761736	3	22	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108765740	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765938_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776707_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
32713	chr2	+	2814	15	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	544.677680385569	1	139	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	653	False	NA	NA	False	NA	NA	NA	26279359	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286007_26286206_26286478_26286589
32714	chr9	-	2895	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	-39	-434	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	29.0376910239089	181	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGAGCCTATTTTTCC	NA	False	NA	NA	False	NA	NA	NA	114762986	114728842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114730448_114731440_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
32715	chr7	+	1951	10	NNC	ENSMUSG00000030867.8	novel	2199	10	NA	NA	-4	-30	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	384.286190934842	8	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTTATATATATTAAAATG	NA	False	NA	NA	False	NA	NA	NA	121758657	121769066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_121759078_121759884_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
32716	chr11	+	1580	9	NNC	ENSMUSG00000059552.14	novel	1772	11	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	918.507076728318	6	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471232	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69477716_69477800_69478185_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480500_69481505_69481589_69482175
32718	chr8	+	2924	6	Antisense	novelGene_ENSMUSG00000054648.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	65	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCATGGCGGCGGATAGG	5084	False	NA	NA	False	NA	NA	NA	70157845	70169523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_70159476_70159643_70160344_70160759_70160821_70160987_70161115_70163334_70163633_70169415
32719	chrX	+	2700	20	NNC	ENSMUSG00000000037.18	novel	2931	23	NA	NA	-25	-7816	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	117.681315283094	36	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCCCCATACCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	159900163	160015044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159900461_159904019_159904098_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013001_160013096_160014404
32720	chr14	-	2394	10	NNC	ENSMUSG00000021965.4	novel	2260	9	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	90.2594340337827	38	41	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGTTGCCAACTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	58063614	58044012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58053870_58054006_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
32721	chr11	-	3347	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	10	274	6	-274	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	1	152	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTTAAAAGATCTGATT	1346	False	NA	NA	False	NA	NA	NA	20062903	20012577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
32722	chr7	+	2853	4	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	-17	-22	intron_retention	FALSE	non_canonical	0	0	junction_2	5381.80508751478	11	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTCTTTTTATGTATCT	2399	False	NA	NA	False	NA	NA	NA	141027564	141031240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141027621_141027820_141029022_141029515_141031016_141031144
32723	chr19	-	1660	9	NIC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-22	-2	intron_retention	FALSE	canonical	3	12	junction_7	476.289040394591	4161	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGCTTGTCTGGAACTT	6502	False	NA	NA	False	NA	NA	NA	4062730	4057504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060020_4061101_4061429_4062550
32724	chr4	+	2768	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	28	-4	28	0	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99082411	99148024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
32725	chr18	-	2141	7	NNC	ENSMUSG00000024487.6	novel	3328	6	NA	NA	68	-968	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	112.421824690167	1	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGTTTTTGCTAGTAC	NA	False	NA	NA	False	NA	NA	NA	40352323	40337916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345142_40345201_40345269_40351798_40351919_40352280
32726	chr5	+	1838	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	-11	-1	intron_retention	FALSE	canonical	2	4	junction_5	191.661159341166	751	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAGTTTCATACAGACG	NA	False	NA	NA	False	NA	NA	NA	100187891	100216618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215603
32729	chrX	-	1200	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	159	-609	159	609	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTCTCTGGAAAATGGT	NA	False	NA	NA	False	NA	NA	NA	68649692	68648492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68648500_68649700
32730	chr7	-	2421	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	1	7	1	-7	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	327	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTCCTACCGCCAGGTT	3913	False	NA	NA	False	NA	NA	NA	19504471	19490062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
32731	chr2	+	935	2	ISM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	130	8421	89	-7710	5prime_fragment	FALSE	canonical	3	360	junction_1	0	29	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCCCTGGCTGACCTGGA	NA	False	NA	NA	False	NA	NA	NA	144112949	144114726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_144112993_144113834
32732	chr7	-	3886	4	NNC	ENSMUSG00000030980.18	novel	1467	5	NA	NA	2276	476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	289.540248593448	1	185	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGGAATCACTCACAGATG	NA	False	NA	-44	True	NA	NA	NA	118452560	118442536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118445318_118447671_118447798_118449843_118449913_118451650
32733	chr5	+	2443	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	45	4	0	-4	multi-exon	FALSE	canonical	3	34	junction_3	2120.04764097414	64	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACCCTGTCTCAAAAAAA	6050	False	NA	NA	False	NA	NA	NA	129924608	129932460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
32738	chr6	-	1969	9	NNC	ENSMUSG00000005667.9	novel	1421	9	NA	NA	11	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	846.602769898611	1	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAATGCGTTTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	83294577	83282692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283407_83283491_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
32739	chr4	-	2101	8	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	0	0	intron_retention	FALSE	canonical	2	10	junction_7	40.0209129004794	472	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1973	False	NA	NA	False	NA	NA	NA	116664803	116661198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116664002_116664664
32740	chr7	-	1403	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	14	-75	14	75	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116425072	116423669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_116423700_116425100
32741	chr14	+	629	1	Antisense	novelGene_ENSMUSG00000060373.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCCCGAGCTCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	52340831	52341460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52340800_52341500
32742	chr11	-	2768	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	-2	0	-2	0	multi-exon	FALSE	canonical	3	320	junction_5	13.7462722219517	734	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGACCAGATGTTGTAT	NA	False	NA	NA	False	NA	NA	NA	101357058	101349570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
32743	chr6	+	2134	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	-163	5	-22	-5	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	3870	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCTCCCTTGTCTTGTCT	652	False	NA	NA	False	NA	NA	NA	124806487	124810659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
32744	chr6	+	1301	8	NNC	ENSMUSG00000030007.9	novel	1561	11	NA	NA	-1535	-94	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2181.22178830946	1	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGCTTGGTGTGTTTTT	4156	False	NA	NA	False	NA	NA	NA	85436184	85445363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85436193_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
32746	chrX	+	1301	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-66	-25	66	mono-exon	FALSE	NA	NA	NA	NA	NA	7	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
32747	chr18	+	2250	10	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	793.570272740718	6	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTGTAAGGAAGTGAAAT	478	False	NA	NA	False	NA	NA	NA	61688394	61721368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709596_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
32748	chr3	-	1840	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	5	42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1084.58364822636	2	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTGCTGGGTCTCCCT	NA	False	NA	NA	False	NA	NA	NA	108352509	108333885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336751_108338768_108338933_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
32750	chr1	-	3750	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	104	9	1	-9	multi-exon	FALSE	canonical	3	395	junction_2	27.5	1	197	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAACATCTTTGTTCTGTT	6376	False	NA	NA	False	NA	NA	NA	37469080	37456173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_37459709_37467422_37467507_37468949
32751	chr4	+	2405	3	Antisense	novelGene_ENSMUSG00000028345.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	25	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGAAAGAATGGAGACAAT	NA	False	NA	NA	False	NA	NA	NA	48466407	48470075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_48467903_48468278_48468992_48469878
32752	chr14	-	2996	9	NNC	ENSMUSG00000068245.15	novel	2973	9	NA	NA	-5077	0	intron_retention	FALSE	non_canonical	0	0	junction_1	123.732006267578	1	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607996	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586504_59586670_59586838_59588595_59588668_59590099_59590831_59591756_59591825_59592588_59593900_59596924_59597033_59599182_59599305_59607902
32753	chr6	-	1667	13	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3260.04742637622	1	47	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446825	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439936_51440008_51440235_51440390_51440474_51441068_51441196_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444270_51444370_51444407_51446650
32757	chr2	+	1572	13	NNC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	498.610478953484	14	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATAGTTCTTTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	69691937	69701854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465_69701586_69701706
32758	chr4	+	1461	10	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	7	-794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	915.386230296963	24	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	0	True	NA	NA	False	NA	NA	NA	40722486	40733106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722553_40722602_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
32760	chr2	-	2933	20	NNC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	31.7015165186855	2	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATGCAGTCGCCCTCCC	NA	False	NA	NA	False	NA	NA	NA	130539396	130526035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529148_130529521_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538567_130538676_130539278
32761	chr10	-	3539	8	NNC	ENSMUSG00000063320.12	novel	716	3	NA	NA	14	6579	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	169.966743445743	2301	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCATCCTATTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	82459010	82449105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_82449333_82449943_82450061_82451226_82451465_82452292_82452627_82453306_82454699_82455149_82456052_82458541_82458659_82458798
32763	chr2	+	4452	19	FSM	ENSMUSG00000014361.6	ENSMUST00000014505.5	4302	19	-40	-110	-40	110	multi-exon	TRUE	canonical	2	5	junction_3	3.05302925867424	42	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAATGGCAGGTTTGCC	NA	False	NA	NA	False	NA	NA	NA	128540835	128644924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_128541024_128571105_128571515_128578482_128578584_128580115_128580290_128592019_128592107_128593826_128593943_128600962_128601147_128603996_128604149_128613266_128613421_128618205_128618360_128619332_128619419_128620834_128620931_128621711_128621793_128624442_128624536_128625811_128625931_128632136_128632247_128634865_128635026_128636361_128636499_128643073
32764	chr2	-	4561	8	NNC	ENSMUSG00000027171.11	novel	2872	6	NA	NA	102	3709	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.60247758603645	45	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAATTTGAGGCAAACAT	NA	False	NA	NA	False	NA	NA	NA	104680119	104657376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_104659668_104661491_104661840_104661933_104663156_104669666_104669800_104672399_104672449_104675334_104675499_104679420_104679546_104679890
32765	chr7	+	1479	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	4800	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115692535	115704445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
32767	chr3	-	1809	3	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	683	-10	intron_retention	FALSE	canonical	3	9125	junction_1	15	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCGTTTGCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	86049326	86045256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86046556_86048545_86048734_86049004
32769	chr10	+	2337	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	89	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	363.420541241023	1	91	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATCTGGCCTTGTGTCTC	7079	False	NA	NA	False	NA	NA	NA	60113538	60138375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130471_60130818_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135700_60135806_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
32770	chr12	-	2379	9	NNC	ENSMUSG00000041645.15	novel	2850	9	NA	NA	1182	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	423.649914434076	1	69	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATCCTGAGGGTGTTGCA	698	False	NA	NA	False	NA	NA	NA	103390857	103374243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_103374737_103376186_103376314_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384465_103385220_103385744_103390130_103390192_103390605
32771	chr3	-	3168	4	ISM	ENSMUSG00000038550.11	ENSMUST00000159863.2	372	5	20	-1941	20	-6	intron_retention	FALSE	canonical	3	167	junction_1	16.9901932498329	10	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTTAAATGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	95789495	95785822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95787833_95787946_95788026_95788294_95788371_95788492
32772	chr2	-	2489	15	ISM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	21954	3	-16709	-3	3prime_fragment	FALSE	canonical	3	138	junction_4	16.2683177761349	2	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCCGGCTGCTGGTGTTA	NA	False	NA	NA	False	NA	NA	NA	156812022	156769267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956
32773	chr14	-	2009	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	27	815	2	-809	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGGCTCAGACGCTGT	3471	False	NA	NA	False	NA	NA	NA	65830497	65768712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
32777	chr10	-	5404	6	NIC	ENSMUSG00000063804.9	novel	5402	5	NA	NA	53	-12	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	6.46838465151849	48	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGGTTTGGAGATATTT	NA	False	NA	NA	False	NA	NA	NA	45362438	45252727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_45257528_45295232_45295305_45296619_45296805_45345132_45345315_45352443_45352493_45362322
32778	chr4	-	4636	9	Antisense	novelGene_ENSMUSG00000028696.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGCTCTGCGCGCGCAGG	8830	False	NA	NA	False	NA	NA	NA	116398023	116364818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_116364847_116367717_116368059_116372262_116372695_116377853_116378009_116381379_116381549_116386865_116387005_116387608_116387731_116389752_116389974_116394994
32779	chr14	+	2323	14	NNC	ENSMUSG00000015971.6	novel	2328	14	NA	NA	5	-1230	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_13	85.8768900035766	279	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAAACTTGCTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	29700366	29716594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917_29715103_29716243
32781	chr19	+	1930	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTCTCGTGGTGTTTTGG	1463	False	NA	NA	False	NA	NA	NA	44282508	44295301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291761_44294887
32784	chr11	-	1754	10	ISM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	19053	828	-1210	237	3prime_fragment	FALSE	canonical	3	615	junction_5	61.2410739275731	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	86555609	86475518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479
32785	chr17	-	2232	12	NNC	ENSMUSG00000059409.10	novel	2926	15	NA	NA	-999	-703	intron_retention	FALSE	non_canonical	0	0	junction_8	135.830107788436	1	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGAAATACACACAGGAAT	NA	False	NA	NA	False	NA	NA	NA	46998844	46994619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46997034_46997188_46997358_46997484_46997620_46997959_46998053_46998175_46998287_46998371_46998572_46998762
32787	chr5	-	1677	2	Genic_Genomic	ENSMUSG00000080935.4	novel	1293	1	NA	NA	-52	994	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGGGTG	1743	False	NA	NA	False	NA	NA	NA	138363866	138361527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_138363006_138363667
32788	chr3	+	1617	7	NNC	ENSMUSG00000038374.11	novel	2608	6	NA	NA	0	-884	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1955.98241868945	1158	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATTGGCCCTTCTCTTC	8642	False	NA	-70	True	NA	NA	NA	96537255	96540223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96537382_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004_96539844_96539980
32789	chr5	+	2358	14	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	-7	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	201.879101438542	1	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATCAAATGGGCTAATAA	NA	False	NA	NA	False	NA	NA	NA	64250285	64285681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260273_64260715_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
32790	chr18	+	3162	19	NNC	ENSMUSG00000041238.17	novel	3209	19	NA	NA	-3	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	52.3739226884695	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAATGTGGATGTGTTAC	3242	False	NA	NA	False	NA	NA	NA	11790436	11875941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838850_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
32791	chr8	-	3841	24	FSM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	8	-11	-3	4	multi-exon	TRUE	canonical	3	94	junction_23	12.3354193641104	156	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTTTTTGCTGGGAGAA	1251	False	NA	NA	False	NA	NA	NA	111629083	111609083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360_111621459_111621901_111621975_111622515_111622642_111625830_111625882_111626026_111626179_111626464_111626570_111629053
32792	chr7	-	1366	2	Genic_Genomic	ENSMUSG00000107383.2	novel	1342	1	NA	NA	-2	86	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	116425088	116423658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_116424824_116424887
32793	chr1	+	3000	3	ISM	ENSMUSG00000026096.15	ENSMUST00000114484.8	2283	7	-19	3622	-10	1784	intron_retention	FALSE	canonical	3	122	junction_2	18.5	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAGACATAACATCTTTA	NA	False	NA	NA	False	NA	NA	NA	53352802	53359601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_53353018_53354014_53354259_53357060
32794	chr15	-	1376	6	FSM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	-46	11	-36	0	multi-exon	FALSE	canonical	3	653	junction_4	117.266534015464	4211	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTCCCAGGTAATTTCA	NA	False	NA	NA	False	NA	NA	NA	57897757	57885665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
32795	chr15	+	1072	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	430	480	0	-480	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	2	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAAGATGTCAATGCTG	NA	False	NA	NA	False	NA	NA	NA	98928201	98935511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
32796	chr17	-	1227	4	NNC	ENSMUSG00000024121.14	novel	796	4	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	1457.11160252817	41	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACTGGCTTGTGTTCTGG	NA	False	NA	NA	False	NA	NA	NA	24388412	24382842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24383583_24383672_24383857_24386487_24386558_24388179
32797	chr5	-	1832	15	NNC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-6	-167	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	185.216806219421	1355	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTTTTAGTGTGGTT	8872	False	NA	NA	False	NA	NA	NA	110801252	110796450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799222_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
32798	chr11	+	2281	12	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	344.979529875408	1079	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	98573391	98586804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584062_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
32799	chr15	-	2631	10	NNC	ENSMUSG00000022329.16	novel	2914	11	NA	NA	-28	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	87.4402794433767	4	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCACCCAGAACTTGGCG	NA	False	NA	NA	False	NA	NA	NA	35155843	34875654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35099575_35099695_35114674_35114804_35115710_35115792_35155672
32800	chr8	+	2628	17	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	-48	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	710.420801246522	2	131	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGTGTGAATACAAGGT	NA	False	NA	NA	False	NA	NA	NA	75836148	75854325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836230_75836333_75836497_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75846001_75847430_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852872_75852993_75853850
32801	chrX	-	1754	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	74	31	-2	-31	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	5	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATAAAACTTGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	135642027	135633732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
32802	chr10	+	4033	21	NIC	ENSMUSG00000035697.15	novel	3499	22	NA	NA	14	-3	intron_retention	FALSE	canonical	3	46	junction_7	16.1228874585169	2	63	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACTGCCACAGCCCGAT	834	False	NA	NA	False	NA	NA	NA	79855500	79867293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79855633_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
32803	chr6	-	4324	26	FSM	ENSMUSG00000030279.16	ENSMUST00000203187.3	3494	26	-24	-806	-5	1	multi-exon	FALSE	canonical	3	13	junction_3	32.7664218369965	12	66	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCTAACTCTTTGCCTC	NA	False	NA	NA	False	NA	NA	NA	143045821	142956652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142966049_142966101_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403_143045523_143045658
32804	chrX	-	2129	3	NNC	ENSMUSG00000034403.17	novel	3038	3	NA	NA	-17	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	189.5	3	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGCATCATTTGGATTT	NA	False	NA	NA	False	NA	NA	NA	98514315	98509715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_98511690_98511858_98511921_98514222
32805	chr4	+	2542	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	5	-2	combination_of_known_splicesites	FALSE	canonical	3	27	junction_7	96.9667789143156	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTCTTGTGTGTATCCTT	7	True	NA	NA	False	NA	NA	NA	11558953	11615803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601632_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11612371_11612439_11612617_11612819_11615442
32806	chr5	+	3618	5	Antisense	novelGene_ENSMUSG00000046562.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	178	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGTAACTATGGAGAGCGG	NA	False	NA	NA	False	NA	NA	NA	115260620	115273004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_115263562_115265070_115265245_115265362_115265473_115268525_115268640_115272725
32807	chr9	-	1723	12	NNC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3147.32819655966	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAGATTGTGTGGCCGTG	NA	False	NA	NA	False	NA	NA	NA	89996627	89973724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975940_89976487_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89982468_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
32808	chr2	+	3645	9	NIC	ENSMUSG00000037902.19	novel	3812	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	29.9934888767546	122	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	NA	NA	NA	129434750	129474148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_129434813_129435523_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469906_129471846
32809	chr12	-	1925	9	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	75	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGACTGCCAGCGCCCGCG	3517	False	NA	NA	False	NA	NA	NA	24764087	24758281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24758442_24758556_24758631_24758934_24759083_24759321_24759437_24760349_24760488_24761443_24761537_24761665_24761779_24762898_24762972_24763076
32810	chr16	-	2825	17	NIC	ENSMUSG00000041974.11	novel	3282	20	NA	NA	5939	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_10	100.265818577419	3	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	7933	False	NA	NA	False	NA	NA	NA	15958729	15707087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15786391_15786582_15855353_15855574_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571
32812	chr1	-	2473	20	NNC	ENSMUSG00000026198.16	novel	2966	19	NA	NA	-18	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	36.0815481422775	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTGTGGTTTGGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	75156948	75148359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213_75156397_75156802
32813	chr2	+	1245	8	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAATTTAAAAACACCAAG	NA	False	NA	NA	False	NA	NA	NA	154714354	154730282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726358_154729631_154729714_154730099
32814	chr3	+	2234	13	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	13	0	intron_retention	FALSE	non_canonical	0	0	junction_8	406.438486188938	2	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	32762668	32781122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772624_32772715_32772806_32774049_32774107_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
32815	chr8	+	3715	5	NNC	ENSMUSG00000079038.4	novel	2002	6	NA	NA	14	1972	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4.81534007106456	22	73	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGCCTCCATTTGCTG	7175	False	NA	NA	False	NA	NA	NA	69723759	69757999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69723866_69743913_69743975_69752904_69753032_69753409_69753474_69754642
32817	chr8	-	2262	3	NNC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	12822	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	125.5	1	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	112641970	112638642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112640742_112641120_112641227_112641913
32819	chr5	+	2439	7	ISM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	6	22582	6	-2062	5prime_fragment	FALSE	canonical	3	458	junction_5	35.8375966456085	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCCAACTAAGACAGTATAA	NA	False	NA	NA	False	NA	NA	NA	45827266	45835306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933
32820	chr12	+	3593	7	NNC	ENSMUSG00000021286.9	novel	1265	8	NA	NA	-5	-5	intron_retention	TRUE	non_canonical	0	0	junction_5	284.650467923186	11	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACACAGCAGGCTCTGG	NA	False	NA	NA	False	NA	NA	NA	111780663	111794815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111793570_111793653_111794120_111794251
32822	chr8	+	1615	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	-45	-1	-45	1	multi-exon	FALSE	canonical	0	0	junction_1	104.358456772798	1120	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAGTGCATTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	75820203	75827218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
32823	chr16	+	3727	16	FSM	ENSMUSG00000005958.16	ENSMUST00000006112.7	4185	16	458	0	458	0	multi-exon	FALSE	canonical	3	140	junction_8	11.1167541225945	131	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGCCCCTGCTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	21023962	21042054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_21024014_21031639_21031705_21033074_21033748_21035945_21036102_21036764_21037116_21037244_21037370_21037543_21037704_21037788_21037898_21038204_21038258_21039169_21039293_21039396_21039645_21040034_21040251_21040376_21040527_21040614_21040809_21040898_21041055_21041157
32824	chr10	-	1723	11	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-167	-870	intron_retention	FALSE	canonical	0	0	junction_1	621.626648399182	2	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCGTCGTCAAGCCCCTC	8525	False	NA	NA	False	NA	NA	NA	128402023	128394506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394702_128394962_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
32825	chr2	+	2396	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	133	84	129	-84	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTACACTGGTCTAA	NA	False	NA	NA	False	NA	NA	NA	34662239	34666459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
32826	chr5	-	3369	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	71	2860	-10	1285	multi-exon	TRUE	canonical	3	205	junction_7	28.1735691739616	257	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCAGCTCTTCCCCTCGGC	NA	False	NA	NA	False	NA	NA	NA	31117634	31111056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
32827	chr10	-	2527	12	NIC	ENSMUSG00000055531.13	novel	2227	11	NA	NA	0	185	combination_of_known_junctions	FALSE	canonical	3	24	junction_2	269.741045087615	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGCCCTTGATTTTGA	4474	False	NA	NA	False	NA	NA	NA	117212875	117184758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_117185373_117191686_117191758_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
32828	chr11	+	2909	23	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	-39	2544	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	189.263448379665	2	80	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCATGCCCCCTGCACCT	NA	False	NA	NA	False	NA	NA	NA	45946779	46031019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45947038_45951749_45951836_45955838_45955910_45973848_45973967_45974101_45974238_45984706_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018244_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832
32829	chr8	-	4136	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	721	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	187.520665527829	1	191	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGTGAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	81606404	81491073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493109_81496275_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527021_81606160
32830	chr1	+	2471	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	19	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	NA	False	NA	NA	NA	151304398	151333912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
32831	chr4	-	3286	16	NNC	ENSMUSG00000029016.14	novel	3306	23	NA	NA	2	-634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	33.6943120818138	4	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGACAACAGCTTTTTCA	7424	False	NA	NA	False	NA	NA	NA	148123268	148089349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095159_148102082_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
32833	chr12	-	2809	14	NNC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-6	-8	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_7	152.402534573342	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAAATATTTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	65219360	65179515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65195731_65196078_65196323_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205406_65219222
32834	chr11	-	1421	5	NIC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	8	0	intron_retention	FALSE	canonical	3	20384	junction_2	341.457446104196	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9949	False	NA	NA	False	NA	NA	NA	69812204	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
32835	chr13	+	3564	11	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	2	-843	intron_retention	FALSE	canonical	3	504	junction_4	49.9428673586129	18	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACCTAGTGTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	107083664	107095425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107093709_107095162
32836	chr15	-	3453	15	ISM	ENSMUSG00000009733.10	ENSMUST00000229696.2	3302	16	222	55	1	-6	3prime_fragment	TRUE	canonical	3	68	junction_1	18.1805008799235	67	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGAGTTTTTGGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	100449667	100400682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205
32837	chr9	+	2974	18	FSM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	145	1508	-4	-1503	multi-exon	FALSE	canonical	3	262	junction_7	34.4140270749526	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGAATTCTGCCTGGGAA	1918	False	NA	NA	False	NA	NA	NA	21634923	21659707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
32838	chrX	+	3206	5	FSM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	-7	0	-4	0	multi-exon	FALSE	canonical	3	133	junction_1	15.8192920195564	149	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTCATGTGAATGAC	NA	False	NA	NA	False	NA	NA	NA	162692133	162712542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162709898
32839	chr1	-	2630	19	NNC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	-3	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	345.073820157404	2	106	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTCATGTTAAAAACACT	NA	False	NA	NA	False	NA	NA	NA	63215831	63182772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186348_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190862_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204182_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
32840	chrUn_JH584304v1	+	2149	5	Intergenic	novelGene_4695	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	8.22724133595217	2	61	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTCAGTGTGGTCACT	NA	False	NA	NA	False	NA	NA	NA	53393	58738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_54875_55117_55247_55506_55714_56994_57150_58561
32844	chr9	+	1888	12	NIC	ENSMUSG00000045594.11	novel	2806	15	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	110.549342036909	45	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGTCCTGTCATTAAT	NA	False	NA	NA	False	NA	NA	NA	114230175	114303446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_114230338_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
32845	chr8	+	1837	18	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	5	junction_15	115.628835857069	1	14	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGGGCTCACCTCATTT	4585	False	NA	NA	False	NA	NA	NA	3681152	3692793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3681279_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691734_3691821_3691897_3692056_3692645
32846	chr6	+	1698	8	ISM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-61	15	-15	-14	intron_retention	FALSE	canonical	3	3577	junction_4	212.973122765311	1627	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAATGGAAAAAAGTGAAG	NA	False	NA	NA	False	NA	NA	NA	124908333	124913093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195
32847	chr11	-	2425	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-4	0	intron_retention	FALSE	canonical	3	48	junction_6	110.81174601799	567	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	NA	False	NA	NA	NA	120508743	120500912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
32848	chr12	-	2056	6	NIC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-17	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	23.3032186618072	1241	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGGTAGTAGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	77008992	76984046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008036_77008064_77008763
32849	chr11	-	247	2	NNC	ENSMUSG00000086193.2	novel	440	2	NA	NA	-538	-35851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCGGCGGCGGCGACGA	NA	False	NA	NA	False	NA	NA	NA	87939370	87938667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87938856_87939311
32850	chr11	-	1931	14	NNC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	302.458936525314	12	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	96807239	96798641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806822_96807023_96807209
32851	chr15	-	1736	15	NNC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	9	-1	intron_retention	FALSE	non_canonical	0	0	junction_13	134.442101186453	79	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTACCAGGATGTAACTC	NA	False	NA	NA	False	NA	NA	NA	102259172	102246692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102258378_102258516_102258930
32852	chr9	-	2371	18	NIC	ENSMUSG00000032498.10	novel	2754	19	NA	NA	25	12	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	121.696400278852	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTATATAACCGCACATT	NA	False	NA	NA	False	NA	NA	NA	111100577	111057310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
32854	chr2	-	2939	16	NNC	ENSMUSG00000027010.17	novel	2392	17	NA	NA	-327	-55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	45.4765385177407	5	27	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCATTCTCCTCCTGATG	NA	False	NA	NA	False	NA	NA	NA	71159511	71105088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71137364_71137451_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777
32857	chr3	+	2109	6	NNC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	34	-658	intron_retention	FALSE	non_canonical	0	0	junction_1	311.218894027982	1	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTCGAGAGAAGAATGTAAA	NA	False	NA	NA	False	NA	NA	NA	102965716	102973134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102965757_102967537_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
32858	chr18	-	3930	14	FSM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	11	24	11	-24	multi-exon	FALSE	canonical	3	46	junction_13	6.05888266692776	2	135	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGCATTACATGTTGACA	-7	True	NA	NA	False	NA	NA	NA	6490845	6435976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6490462
32859	chr10	+	1944	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	13	-1	combination_of_known_splicesites	FALSE	canonical	3	21	junction_9	107.767146132145	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTAAAGTGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	93289285	93320735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
32860	chr17	-	4535	7	ISM	ENSMUSG00000034647.16	ENSMUST00000150766.2	1513	8	-17	33577	0	2267	5prime_fragment	FALSE	canonical	3	24	junction_4	22.2011010737956	26	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATATAAAAGTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	66384034	66327616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
32861	chr15	+	2528	8	NIC	ENSMUSG00000022550.19	novel	2262	12	NA	NA	3	-1	intron_retention	FALSE	canonical	3	120	junction_4	19.7391147993324	327	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGAAATCGTTTTCTTT	3152	False	NA	NA	False	NA	NA	NA	76460607	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478953_76479046_76479654_76479738
32862	chr3	+	3338	7	NIC	ENSMUSG00000000561.15	novel	911	8	NA	NA	-44	-231	intron_retention	FALSE	canonical	3	910	junction_2	57.0917876950987	1	88	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACCTGACAGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	105866779	105874612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873742_105874478
32863	chr4	-	2727	19	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	5460	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	114.306996750736	1	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATATGTTTCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	108959768	108918852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929518_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693
32864	chr5	-	2036	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	4	4	4	-4	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	554	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGTTTATTTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	110417749	110407024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
32866	chr10	+	2766	18	Genic_Genomic	ENSMUSG00000097412.3	novel	323	4	NA	NA	4965	10648	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCACTAAGCCGCGCGC	NA	False	NA	NA	False	NA	NA	NA	86526717	86541318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_86526995_86527490_86527619_86528002_86528159_86528248_86528325_86529239_86529378_86529777_86530023_86530212_86530480_86531336_86531405_86531521_86531601_86531683_86531830_86532584_86532698_86534180_86534305_86534449_86534560_86537560_86537893_86538774_86538892_86539323_86539464_86540157_86540258_86541168
32867	chr5	-	2072	19	NIC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	40	-3	combination_of_known_junctions	FALSE	canonical	3	9	junction_18	63.7616123531749	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTTTTCATTATACTT	NA	False	NA	NA	False	NA	NA	NA	107745370	107696892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745157
32868	chr2	-	3751	10	FSM	ENSMUSG00000027217.14	ENSMUST00000111265.9	3751	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	5.53774924194538	57	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTTTCTCATTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	93164832	93032104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
32869	chr3	-	2925	7	NNC	ENSMUSG00000027881.15	novel	3026	6	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	156.219663721739	217	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	6855	False	NA	NA	False	NA	NA	NA	108819038	108810122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479_108818662_108818757
32870	chr5	-	2024	11	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-41	-259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	183.793062981169	12	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34093635	34055518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056766_34057799_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
32872	chr9	+	1555	14	FSM	ENSMUSG00000041506.16	ENSMUST00000125630.8	1611	14	55	1	43	-1	multi-exon	FALSE	canonical	3	1203	junction_10	77.2574272104087	10	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGTTCTCCCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	106354571	106362614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
32873	chr16	-	2800	10	NNC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.7693445237225	5	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	43710000	43681769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_43682359_43682561_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
32874	chr2	-	2251	16	NNC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	7	109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	65.780307759153	6	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTACTATGTGGGAACTTC	NA	False	NA	NA	False	NA	NA	NA	12424274	12352333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_12353015_12354517_12354654_12355739_12355812_12360087_12360176_12361703_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405914_12408808_12408980_12410670_12410732_12414811_12414892_12423969
32875	chr9	-	2271	8	NIC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	-11	-5	intron_retention	FALSE	canonical	3	1493	junction_5	98.8858339868017	113	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTTATTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	37568544	37560482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_37560800_37561326_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
32876	chr3	+	1796	9	Antisense	novelGene_ENSMUSG00000027835.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCAGGCGTTGTCCGGA	NA	False	NA	NA	False	NA	NA	NA	75423801	75464120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_75424652_75424734_75424908_75428007_75428091_75428336_75428416_75434893_75435022_75436116_75436234_75440846_75440902_75448466_75448686_75464028
32877	chr2	-	2686	19	NNC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	12	26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	144.893500693474	1	99	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCTTAAAGAATTCCCAG	NA	False	NA	NA	False	NA	NA	NA	126975805	126945843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975318_126975494_126975768
32878	chr8	-	3224	1	Genic_Genomic	ENSMUSG00000037070.11	novel	NA	NA	NA	NA	409	22	mono-exon	FALSE	NA	NA	NA	NA	NA	10	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACCCCCAATAAATGAGG	NA	False	NA	NA	False	NA	NA	NA	79235099	79231875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_79231900_79235100
32879	chr2	+	2326	4	NNC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	19	18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	11.323525167642	153	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGGACTGCTCTTG	3392	False	NA	NA	False	NA	NA	NA	91541216	91551908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_91541411_91542424_91543211_91548987_91549131_91550705
32880	chr3	-	2162	16	NNC	ENSMUSG00000028107.15	novel	2157	16	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	191.892400405366	2	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653843_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
32881	chr9	+	1608	10	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	16	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	476.576785102637	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCCTAGTGACTCTGAG	641	False	NA	NA	False	NA	NA	NA	45281755	45307444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45291806_45291952_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306826_45306865
32882	chr2	-	3848	34	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.171419825742193	1	172	20	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCATGCATCATTCGGT	NA	False	NA	NA	False	NA	NA	NA	180997824	180962113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180962221_180962596_180962857_180964108_180964302_180964591_180964682_180965151_180965236_180965474_180965540_180970396_180970482_180972598_180972669_180976702_180976760_180977680_180977835_180980844_180980881_180980949_180981033_180982286_180982422_180987946_180988010_180988623_180988710_180988815_180988885_180990965_180991102_180991254_180991368_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993158_180993365_180993491_180993593_180993744_180993830_180993976_180994547_180994641_180995769_180995967_180996143_180996233_180996798_180996923_180997123_180997345_180997441_180997605_180997717
32883	chr8	+	796	1	Genic_Genomic	ENSMUSG00000091490.4	novel	NA	NA	NA	NA	8041	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGCTCTCTGCATGTG	NA	False	NA	NA	False	NA	NA	NA	43646123	43646919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_43646100_43646900
32884	chr7	+	1511	4	NIC	ENSMUSG00000012848.16	novel	1248	5	NA	NA	0	113	intron_retention	FALSE	canonical	3	14799	junction_3	1830.45950515164	47	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTAAAGATTTATTATG	NA	False	NA	NA	False	NA	NA	NA	12656244	12660726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12656316_12656899_12657009_12659318_12660422_12660498
32885	chr13	+	2055	8	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGAGGTTCCCCGATTCG	NA	False	NA	NA	False	NA	NA	NA	100915251	100922922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916296_100916530_100916639_100917278_100917423_100917663_100917903_100918132_100918291_100919971_100920153_100921962_100922116_100922894
32886	chr5	-	1700	4	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	161.287183481998	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTGTGCTTCATTTAG	NA	False	NA	NA	False	NA	NA	NA	116560925	116546552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116547550_116553465_116553530_116560171_116560284_116560398
32887	chr5	-	2823	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	190	11	-11	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	1	113	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8447	False	NA	NA	False	NA	NA	NA	137305746	137293976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
32888	chr10	-	1326	1	Intergenic	novelGene_3553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGCCGGGCGTGGTGGCGC	NA	False	NA	NA	False	NA	NA	NA	120372832	120371506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_120371500_120372800
32889	chr10	-	1762	7	Intergenic	novelGene_3543	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCCCCTCCTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	120371360	120359240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_120359326_120359403_120359472_120360121_120360189_120363519_120363638_120364338_120364516_120369967_120370074_120370219
32890	chr2	+	2987	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	14	-1550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	297.005466134178	1	116	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTCCCTAGGACATCT	1987	False	NA	NA	False	NA	NA	NA	5850114	5875156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5869519_5869582_5871159_5871219_5872899
32891	chr16	+	1531	7	NIC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	1	38	combination_of_known_splicesites	FALSE	canonical	1	5	junction_2	266.889125959743	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7071	False	NA	NA	False	NA	NA	NA	38379060	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38379125_38384476_38384664_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
32892	chr17	+	2664	4	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-49	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	105.889879906753	1	125	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACCTTCTAAGGGATGC	NA	False	NA	NA	False	NA	NA	NA	17284325	17309880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284469_17305824_17305910_17306151_17306213_17307505
32893	chrX	+	3150	2	Genic_Genomic	ENSMUSG00000060090.17	novel	4417	5	NA	NA	31198	-1093	multi-exon	FALSE	canonical	0	0	junction_1	0	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGAGACATTAATTTA	NA	False	NA	NA	False	NA	NA	NA	20262055	20265999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_20262092_20262885
32894	chr6	+	2001	3	NNC	ENSMUSG00000036402.14	novel	1876	4	NA	NA	3	210	at_least_one_novel_splicesite	FALSE	canonical	2	92	junction_1	138.5	142	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCGAGCTTTTACCTT	NA	False	NA	NA	False	NA	NA	NA	66873442	66996280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66873500_66992716_66992828_66994447
32895	chr13	+	4667	2	FSM	ENSMUSG00000017756.10	ENSMUST00000221813.2	356	2	-2552	-1759	1005	5	multi-exon	FALSE	canonical	3	758	junction_1	0	8	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAACTTCGTGTGCCTC	2458	False	NA	NA	False	NA	NA	NA	73959029	73964866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_73961792_73962961
32896	chr4	+	2980	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	-184	-4	29	0	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	35	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99082199	99148024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
32897	chr7	+	2200	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	30	0	30	0	multi-exon	FALSE	canonical	2	13	junction_1	306.901721511409	640	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	78545786	78558126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78545950_78551977_78552579_78555590_78555792_78556891
32898	chr17	+	2633	9	NNC	ENSMUSG00000024457.17	novel	3203	10	NA	NA	-5	0	intron_retention	FALSE	non_canonical	0	0	junction_5	106.929883568626	28	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	37148020	37170290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163607_37167547_37167664_37167880_37167914_37168291_37168720_37169299
32899	chr9	+	1216	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	6084.3234952673	88	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085671
32901	chr13	-	1948	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	-14	8	-14	-3	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	487	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCTAGTGGTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	59917638	59903230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
32902	chr6	+	1766	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	120	277	-12	100	multi-exon	FALSE	canonical	3	600	junction_1	54.2445309298778	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAGAAGCCTACACTGC	NA	False	NA	NA	False	NA	NA	NA	113023305	113044957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
32903	chr1	+	1911	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	-18	-4	-18	4	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	1449	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGACTTTTTTTAAATTT	NA	False	NA	NA	False	NA	NA	NA	118249550	118261556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
32904	chr9	-	1125	4	Antisense	novelGene_ENSMUSG00000102554.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTATAGCCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	108231850	108177377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108177913_108178270_108178426_108178516_108178917_108231815
32906	chr8	-	2936	3	Antisense	novelGene_ENSMUSG00000091490.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTTCCGGGTCTCACAA	NA	False	NA	NA	False	NA	NA	NA	43639355	43633573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_43633648_43636156_43636402_43636738
32907	chr11	+	1071	3	ISM	ENSMUSG00000059439.16	ENSMUST00000092822.5	2085	11	292144	23	-39	-20	3prime_fragment	FALSE	canonical	1	2	junction_2	17.5	1	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCGCTGCAATTGGTGT	4283	False	NA	NA	False	NA	NA	NA	85692607	85716861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_85692779_85704825_85704892_85716027
32909	chr12	-	3018	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	735	-48	intron_retention	FALSE	canonical	3	14	junction_3	43.2229362980145	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCACAAAATAAGCGAACAAA	NA	False	NA	NA	False	NA	NA	NA	73332748	73326832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_73327407_73327778_73329511_73331408_73332050_73332677
32910	chr11	-	2249	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-1	14	intron_retention	FALSE	canonical	3	184	junction_6	81.3758000472704	538	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCCCGGGAAGAAACTGGA	NA	False	NA	NA	False	NA	NA	NA	120508737	120500898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
32911	chr17	+	3664	26	FSM	ENSMUSG00000013787.16	ENSMUST00000097342.10	3934	26	271	-1	254	1	multi-exon	TRUE	canonical	3	123	junction_8	74.3555135817109	225	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTGTCTGGTGATTG	7426	False	NA	NA	False	NA	NA	NA	35118200	35133021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35118230_35118335_35118543_35118635_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
32912	chr19	+	4047	7	FSM	ENSMUSG00000025184.11	ENSMUST00000026188.10	4112	7	66	-1	3	1	multi-exon	FALSE	canonical	3	76	junction_3	8.08290376865476	137	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTACATGTTACCTTATT	NA	False	NA	NA	False	NA	NA	NA	42507263	42580783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_42507297_42550990_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
32913	chr5	+	3155	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	33	-2603	24	-2	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	348	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCATGTGGTCTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	148240007	148252873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
32915	chr1	+	1685	7	FSM	ENSMUSG00000034432.12	ENSMUST00000186750.2	508	7	-34	-1143	-5	-18	multi-exon	FALSE	canonical	3	6	junction_1	273.658800130544	20	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTCTTACCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	90531215	90541045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_90531350_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
32916	chr19	-	2453	9	NIC	ENSMUSG00000024826.16	novel	2406	12	NA	NA	-81	10	intron_retention	FALSE	canonical	3	642	junction_2	72.1732940567354	34	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTTGTCTCTTGACTC	6990	False	NA	NA	False	NA	NA	NA	5957181	5947404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028
32917	chr15	-	1060	1	NIC	ENSMUSG00000022999.16	novel	2304	17	NA	NA	-856	-83	mono-exon	FALSE	NA	NA	NA	NA	NA	96	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTCCACTCTTTGGAAG	4248	False	NA	NA	False	NA	NA	NA	98805241	98804181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98804200_98805200
32918	chr10	-	2676	3	NIC	ENSMUSG00000096718.3	novel	4067	4	NA	NA	-30	-1285	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	8.5	6	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATAATTATATACTGCC	4816	False	NA	NA	False	NA	NA	NA	81766344	81739029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81741500_81742300_81742428_81766265
32919	chrX	+	1023	5	ISM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	-8	14	-8	-1	intron_retention	FALSE	canonical	3	1181	junction_1	174.03789098929	2277	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGTACATTCAAGACA	5424	False	NA	NA	False	NA	NA	NA	72830625	72834416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964
32920	chr1	-	1420	6	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	156	-563	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1826.22294367364	4	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTAAAAGATGAGTTCTG	7601	False	NA	NA	False	NA	NA	NA	160040140	160030499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040026
32921	chr4	-	1762	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	3	0	3	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	2	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
32922	chr6	-	2593	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	77	27	0	-5	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	1	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTTGTCTCATGACTT	NA	False	NA	NA	False	NA	NA	NA	148847888	148822559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
32923	chr11	-	2997	16	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	9594	978	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	272.130801882722	2	135	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97069113	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059988_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095
32924	chr4	-	6516	42	NNC	ENSMUSG00000033253.19	novel	10965	72	NA	NA	4468	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	11.0498841854383	30	92	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGCTCAGTGTGATTTT	6267	False	NA	NA	False	NA	NA	NA	118242662	118219943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226620_118226814_118226900_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230864_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925_118233091_118233239_118233325_118233529_118233695_118233805_118233919_118234860_118234973_118235063_118235170_118235262_118235366_118235444_118235598_118237363_118237494_118238550_118238651_118239780_118239983_118240154_118240227_118240343_118240432_118240507_118240676_118241001_118241188_118241377_118241442_118241668_118241777_118241891_118242034_118242210_118242505_118242608
32925	chr2	-	2605	2	Genic_Genomic	ENSMUSG00000077192.5	novel	132	1	NA	NA	-923	1957	multi-exon	FALSE	canonical	3	60	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAGAGGGGAAAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	26530256	26527244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_26527646_26528052
32926	chr2	-	369	1	NIC	ENSMUSG00000017664.17	novel	1892	10	NA	NA	-17	-4542	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTCTGTTGGGACCGG	5740	False	NA	NA	False	NA	NA	NA	165129709	165129340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165129300_165129700
32927	chr2	-	3241	3	ISM	ENSMUSG00000017664.17	ENSMUST00000109299.8	1926	10	7106	18	1574	-18	intron_retention	FALSE	canonical	3	248	junction_1	4.5	5	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTGTTTGCTCAGTACC	NA	False	NA	NA	False	NA	NA	NA	165122569	165118491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165119194_165119371_165119502_165120160
32930	chr12	+	1658	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	262	1485	-4	-1485	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	1	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTACTTGAAAGCAGT	NA	False	NA	NA	False	NA	NA	NA	78908854	78932299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
32931	chr2	+	1504	12	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	-18	131	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_11	411.489634144366	67	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACATGGTATATAGCTGTG	4146	False	NA	NA	False	NA	NA	NA	127429320	127445906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445503
32932	chr9	-	2524	10	NIC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	-13	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	102.396831548203	1	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAACAGCCAGCTAACAAA	NA	False	NA	NA	False	NA	NA	NA	13738334	13719097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_13720137_13721155_13721301_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13737837
32933	chr18	-	3880	10	FSM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	-4	6	-4	-6	multi-exon	FALSE	canonical	3	75	junction_5	10.1153837126587	86	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCAGGCCTTGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	24736878	24712943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322_24729542_24730799_24730970_24732286_24732471_24733871_24734697_24736343
32935	chr15	+	2777	8	ISM	ENSMUSG00000037353.10	ENSMUST00000229648.2	1222	9	80	-1089	42	0	3prime_fragment	FALSE	canonical	3	81	junction_1	12.9362644830535	137	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2499	False	NA	NA	False	NA	NA	NA	100367067	100377045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
32938	chr2	-	3075	11	FSM	ENSMUSG00000026942.14	ENSMUST00000028311.13	3044	11	31	-62	1	62	multi-exon	FALSE	canonical	3	80	junction_10	20.6164982477626	257	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACACACCAGAAGAGGGCA	NA	False	NA	NA	False	NA	NA	NA	25436921	25407931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428877_25429097_25436873
32939	chr9	+	2278	6	NIC	ENSMUSG00000003299.11	novel	846	8	NA	NA	-13	-3	intron_retention	FALSE	canonical	3	918	junction_5	67.9835274165735	1	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTTGAAAATGAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	20914197	20920124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918837_20918926
32940	chr13	+	1653	13	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10290	-4540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	48	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGGGGAGGGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	58539771	58550330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_58540229_58541012_58541048_58542121_58542179_58542291_58542600_58542978_58543108_58543387_58543504_58544003_58544073_58544639_58544714_58545566_58545611_58546969_58547027_58547706_58547803_58548144_58548234_58550208
32941	chr19	+	1840	4	NIC	ENSMUSG00000108414.2	novel	605	10	NA	NA	2	-8	intron_retention	FALSE	canonical	3	444	junction_1	262.203907081662	3	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATGCTATTTATTGTGA	NA	False	NA	NA	False	NA	NA	NA	8700852	8703797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8700871_8701504_8701554_8701766_8702888_8703145
32942	chr5	-	5081	25	FSM	ENSMUSG00000042216.14	ENSMUST00000048112.13	5161	25	80	0	-9	0	multi-exon	FALSE	canonical	3	12	junction_24	23.4519307425968	45	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGGTCTGGTTATTTGT	NA	False	NA	NA	False	NA	NA	NA	113458572	113391085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113392960_113398738_113398907_113400863_113400961_113403117_113403228_113406656_113406740_113407914_113408040_113411114_113411703_113413744_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113430457_113430583_113432845_113432978_113433144_113433291_113433492_113433561_113434640_113434794_113435090_113435254_113436689_113436766_113458413_113458458_113458539
32944	chr7	+	2038	12	NNC	ENSMUSG00000030523.19	novel	2575	11	NA	NA	-43	-8	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	377.782000192467	2	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTCTAGAGGACTGAGT	NA	False	NA	NA	False	NA	NA	NA	63835254	63861167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63849623_63849718_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
32945	chr15	-	2723	8	NNC	ENSMUSG00000022387.18	novel	5152	13	NA	NA	-7487	-268	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_7	242.987863978464	8	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTGGCCCTCTCATTC	7655	False	NA	NA	False	NA	NA	NA	88592554	88571504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88592298
32946	chr15	+	1710	12	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	59	-424	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	325.086866966939	3	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATCTATATTTTTTTTC	NA	False	NA	-35	True	NA	NA	NA	101982357	102003210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997052_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001683_102003094
32948	chr4	+	2164	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	39.3517471022571	3	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637735	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661481_147661587_147665716_147665826_147667290_147668275_147668917
32949	chr17	+	2794	3	NIC	ENSMUSG00000002308.17	novel	1417	4	NA	NA	20	-4	intron_retention	FALSE	canonical	3	328	junction_2	10.5	8	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCTGTCTGCCTCTAGC	7025	False	NA	NA	False	NA	NA	NA	34062096	34067721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34062266_34064989_34067153_34067259
32950	chr5	-	3591	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	858	-2	-14	2	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	224	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGCATTGCAGCTGG	NA	False	NA	NA	False	NA	NA	NA	113909713	113880504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
32951	chr11	-	2171	12	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1876.6863182722	3	92	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674780_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676218_106676363_106676892_106676959_106677051_106677104_106677720_106677901_106679098
32952	chr9	+	1512	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	24	7	24	-7	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	1993	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGCATGCCTACATATCT	8604	False	NA	NA	False	NA	NA	NA	73020753	73030608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
32953	chr5	-	1963	5	NNC	ENSMUSG00000040731.14	novel	2367	6	NA	NA	-3	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	950.779252771115	10	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAGAACCTTACATAAC	2199	False	NA	NA	False	NA	NA	NA	134668182	134648750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_134650276_134654219_134654317_134654394_134654460_134656441_134656630_134668094
32954	chr13	-	1950	15	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	32	-191	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	247.433066603839	26	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	NA	False	NA	NA	NA	104953429	104767838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104934677_104934780_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
32955	chr1	-	2319	6	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	-5	417	combination_of_known_junctions	FALSE	canonical	3	127	junction_3	123.769139933992	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTTCTTCTGTCTTGACT	NA	False	NA	NA	False	NA	NA	NA	16689513	16639588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16641507_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
32958	chr9	-	2784	4	NIC	ENSMUSG00000004771.13	novel	2336	5	NA	NA	5	269	intron_retention	FALSE	canonical	3	939	junction_2	29.9369708257569	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTTTGCATAGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	64645007	64623515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64624271_64632783_64632865_64633905_64635712_64644865
32959	chr11	-	1829	8	FSM	ENSMUSG00000017453.5	ENSMUST00000017597.5	1998	8	169	0	169	0	multi-exon	FALSE	canonical	3	213	junction_3	30.9654184996286	833	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	77784753	77771440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_77772081_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
32960	chr4	-	2307	11	NNC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	-6787	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	277.580546868832	1	80	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTTAGTTATTCACCT	NA	False	NA	NA	False	NA	NA	NA	122765212	122752852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763488_122763565_122765189
32961	chr2	-	1905	9	ISM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	5544	440	5494	-440	3prime_fragment	FALSE	canonical	0	0	junction_6	378.267576425736	1	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTTCTACTGCCTAA	NA	False	NA	NA	False	NA	NA	NA	154910873	154901669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747
32962	chr11	-	4189	2	Antisense	novelGene_ENSMUSG00000048070.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAGCAGGCTCCGGCTG	NA	False	NA	NA	False	NA	NA	NA	66820703	66802820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_66802968_66816661
32964	chr2	+	2598	16	NNC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	-196	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	24.3717504956501	413	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATCTGGCTGGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	84669542	84693920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84669616_84669755_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
32966	chr7	-	2813	4	NIC	ENSMUSG00000030652.12	novel	914	6	NA	NA	-5	-18	intron_retention	FALSE	canonical	3	940	junction_1	43.3615292883245	13	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTTGGCGCTGGATT	6675	False	NA	NA	False	NA	NA	NA	118132529	118124302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_118124518_118125046_118125116_118126559_118128961_118132401
32967	chr19	-	1570	10	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1382.95026378347	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	NA	False	NA	NA	NA	7017335	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998512_7003659_7003757_7005995_7006104_7006327_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
32968	chr17	-	3966	4	FSM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	37	2636	27	2395	multi-exon	FALSE	canonical	3	29	junction_3	5.43650214343336	79	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGTTAAAAACATCAAACCAT	NA	False	NA	NA	False	NA	NA	NA	33577815	33550951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33577707
32970	chr4	-	2557	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	0	1	0	-1	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	1	129	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTGACTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147726965	147696396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
32971	chr15	+	2328	13	Antisense	novelGene_ENSMUSG00000036606.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	16	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGCGCCGGGGCCGCGCT	NA	False	NA	NA	False	NA	NA	NA	89047480	89064890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89047576_89048216_89048316_89048414_89048521_89048615_89048738_89049449_89049600_89049901_89050033_89050108_89050208_89050566_89050695_89050783_89050972_89051144_89052233_89054772_89054825_89055272_89055320_89064867
32972	chr17	-	1973	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	10	5	10	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	70	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTTTG	NA	False	NA	NA	False	NA	NA	NA	90217867	90215894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_90215900_90217900
32974	chrX	+	1114	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-25	67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069463_13069650
32976	chr4	+	3914	14	NNC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	-46	-43	intron_retention	FALSE	non_canonical	0	0	junction_2	109.757182239954	1	145	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAATATTCTTTAGAGCA	NA	False	NA	NA	False	NA	NA	NA	62326987	62345184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62327139_62327811_62327990_62329938_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340959_62341454_62342109_62343494
32977	chr8	+	4487	5	FSM	ENSMUSG00000031986.7	ENSMUST00000034467.7	4464	5	-23	0	-23	0	multi-exon	FALSE	canonical	3	61	junction_4	8.10478253872366	74	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGATGTGTCTTTCCG	NA	False	NA	NA	False	NA	NA	NA	125624601	125632900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_125625121_125625814_125625915_125626945_125627075_125628363_125628632_125629429
32978	chr11	+	3933	21	FSM	ENSMUSG00000009090.18	ENSMUST00000009234.16	4085	21	77	75	-11	-13	multi-exon	FALSE	canonical	3	239	junction_7	27.5174490096738	378	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGACATCAAGTAAGTTCC	NA	False	NA	NA	False	NA	NA	NA	4936900	4992716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
32981	chr1	+	2268	7	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	534	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	162.474271467482	2	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	NA	False	NA	NA	False	NA	NA	NA	175720981	175736299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175721606_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
32983	chr17	+	2930	7	NNC	ENSMUSG00000071266.14	novel	2926	7	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	30.1864575964491	2	49	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTATGAACTTAGACTTG	NA	False	NA	NA	False	NA	NA	NA	22643202	22675656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_22643411_22663148_22663273_22665777_22665875_22670077_22670134_22670684_22670751_22672432_22672560_22673404
32984	chr11	-	1429	11	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	84	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	762.117714004864	47	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5285	False	NA	NA	False	NA	NA	NA	88846207	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815306_88824310_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
32985	chr3	+	1328	6	Antisense	novelGene_ENSMUSG00000027984.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	348	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGTGCTGTGCACCAC	NA	False	NA	NA	False	NA	NA	NA	131027093	131042139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_131027936_131029190_131029307_131034581_131034661_131036166_131036251_131038804_131038938_131042065
32986	chr2	+	2411	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	26	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	201	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2364	False	NA	NA	False	NA	NA	NA	90735112	90740905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
32987	chr11	+	3872	20	NIC	ENSMUSG00000019302.17	novel	4008	22	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_17	45.3592615005813	179	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGAAAAGCTGCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	100900278	100954536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100945851_100945970_100946259_100946432_100953137
32988	chr8	-	2788	3	FSM	ENSMUSG00000054648.9	ENSMUST00000238345.2	705	3	259	-2342	-98	-14	multi-exon	FALSE	canonical	3	71	junction_1	1.5	2	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTTTTTTCCGTAAATTG	NA	False	NA	NA	False	NA	NA	NA	70161174	70157803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70160345_70160760_70160822_70160988
32989	chr2	+	2455	13	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	23025	23439	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTAGGCGGCGGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	5875970	5900145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5876829_5878549_5878629_5879035_5879229_5881173_5881372_5881650_5881809_5882494_5882822_5884405_5884512_5887390_5887502_5887628_5887760_5891308_5891389_5896100_5896169_5897965_5898035_5900068
32990	chr19	+	2428	10	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	-12	2	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6896622735489	218	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGGGTCTGTGCCGTG	4241	False	NA	NA	False	NA	NA	NA	46345361	46363693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
32991	chr7	+	1929	1	Genic_Genomic	ENSMUSG00000110279.2	novel	NA	NA	NA	NA	462	163	mono-exon	FALSE	NA	NA	NA	NA	NA	12	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTTCCCGGCCGCCGGA	NA	False	NA	NA	False	NA	NA	NA	44771802	44773731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_44771800_44773700
32992	chr18	-	1818	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	111	-1694	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	339.479837398335	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTCTCTCTTGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	35064949	35037531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047202_35064680_35064726_35064886
32993	chr4	-	2807	5	NNC	ENSMUSG00000040025.18	novel	4129	5	NA	NA	-7	209	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	409.263362640733	76	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCTGTCGAGCATCACTC	NA	False	NA	NA	False	NA	NA	NA	131939423	131913391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938806_131939210
32994	chr19	-	1170	3	ISM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	43	4919	-39	-3380	5prime_fragment	FALSE	canonical	3	1255	junction_1	10	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCCCCTGTTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	7183638	7180485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_7181522_7181754_7181817_7183566
32995	chr15	+	1229	11	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	160	-265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	393.569104478489	18	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATTCCATCTCACGGACC	NA	False	NA	NA	False	NA	NA	NA	85220605	85347148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271244_85277597_85277708_85322302_85322367_85346480_85346669_85347121
32996	chr6	+	4428	13	NIC	ENSMUSG00000001632.17	novel	4540	13	NA	NA	3	-7	intron_retention	FALSE	canonical	3	36	junction_6	50.9032306331228	1	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAAAAAAAGAAAAG	322	False	NA	NA	False	NA	NA	NA	113284187	113301675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113284299_113286763_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294656_113295372_113295683_113296001_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
32999	chr12	-	1825	10	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	40	17	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	428.545717629713	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTGTTTCTTTTTCTT	9	False	NA	NA	False	NA	NA	NA	78908372	78889758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78907638_78907707_78907802
33001	chr2	+	1714	13	ISM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	42435	6760	-8579	-6760	internal_fragment	FALSE	canonical	3	501	junction_7	41.7109764397281	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGCCCAACTTTAACCTG	NA	False	NA	NA	False	NA	NA	NA	157621755	157726774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347
33002	chr7	-	4148	7	NNC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-8	0	intron_retention	FALSE	canonical	0	0	junction_4	178.859970057274	1	164	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976601	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125973447_125974238_125974376_125975845_125975912_125976008
33003	chr14	-	1296	8	ISM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	8769	205	-64	100	3prime_fragment	FALSE	canonical	3	2964	junction_2	198.16711150348	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCACAAAGGCCAGAGAAAT	NA	False	NA	NA	False	NA	NA	NA	63737772	63730000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569
33005	chr1	+	1364	11	NNC	ENSMUSG00000026020.10	novel	1713	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	573.854868411866	48	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724138	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744844_59750506
33006	chr17	+	1028	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	110	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACAGTAGATAGCTGAA	3146	False	NA	NA	False	NA	NA	NA	35817024	35821657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821245_35821456
33007	chr12	-	1612	1	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCACAAAGCCAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	86568381	86566769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86566800_86568400
33008	chrX	+	3015	4	NNC	ENSMUSG00000025666.17	novel	4007	3	NA	NA	5	-877	intron_retention	TRUE	non_canonical	0	0	junction_3	75.2078601093145	1	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACGAGCCCTAAGCTACA	NA	False	NA	NA	False	NA	NA	NA	80114315	80140601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_80114767_80127896_80128038_80138057_80138369_80138489
33009	chr10	+	1454	2	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	28855	-809	13975	-7	3prime_fragment	FALSE	canonical	3	31	junction_1	0	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTCCATCTTGTGGGTG	1304	False	NA	NA	False	NA	NA	NA	128324044	128326034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_128324229_128324764
33010	chr7	-	1317	8	ISM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	23033	239	29	-237	3prime_fragment	FALSE	canonical	3	513	junction_4	58.3896132781808	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACTATACCTGAGCACCG	NA	False	NA	NA	False	NA	NA	NA	27010055	27004803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945
33011	chr7	-	4426	23	FSM	ENSMUSG00000014418.17	ENSMUST00000107654.8	4422	23	-53	49	12	-43	multi-exon	FALSE	canonical	2	7	junction_22	14.2782270816457	2	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCCTGTTATGTTGGTAA	NA	False	NA	NA	False	NA	NA	NA	46445476	46409938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427624_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440473_46445330
33016	chr10	-	1903	9	NIC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	1	103	intron_retention	FALSE	canonical	3	21	junction_8	667.014430128764	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCAGAATTTGTAGCTGA	NA	False	NA	NA	False	NA	NA	NA	127358232	127353498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127358156
33018	chr4	-	3791	11	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-15	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	399.12674678603	1	165	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGACTGTGTTTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	126088199	126057876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126059411_126060733_126060868_126061262_126061459_126065486_126065675_126066929_126067123_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126088109
33019	chr6	+	2188	5	NNC	ENSMUSG00000046733.8	novel	2083	4	NA	NA	44	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	64.8127109446905	25	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAATCTAAATGTTA	NA	False	NA	NA	False	NA	NA	NA	135042692	135061692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_135042774_135043619_135043784_135055543_135056483_135060440_135060497_135060744
33020	chr2	+	3091	22	Antisense	novelGene_ENSMUSG00000027422.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	57	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATTTCCATCCCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	143789314	143830407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_143789849_143790254_143790402_143791191_143791288_143791590_143791678_143792349_143792447_143794114_143794196_143795153_143795243_143795855_143795934_143796035_143796128_143796653_143796744_143796875_143796957_143797030_143797126_143798686_143798780_143799473_143799569_143805133_143805338_143806683_143806828_143809371_143809513_143810435_143810556_143811329_143811482_143815387_143815507_143816364_143816508_143830094
33021	chr6	-	1711	7	NNC	ENSMUSG00000079477.10	novel	2159	6	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	683.24414052047	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGCTGCTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	88022205	87976092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87976955_87977350_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
33022	chrX	-	1936	8	Antisense	novelGene_ENSMUSG00000015291.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATATACAAAGCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	73355468	73350791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73350844_73351277_73351477_73351735_73351866_73352676_73352782_73353566_73353736_73353990_73354141_73354243_73354297_73354390
33023	chrX	-	1106	1	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGCCTTGTAACCCAGA	2484	False	NA	NA	False	NA	NA	NA	13070073	13068967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13069000_13070100
33024	chr11	+	2226	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	1	2387	1	88	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	1	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAGCAATGTTCAGTA	18	False	NA	NA	False	NA	NA	NA	98798627	98812375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
33026	chr2	-	1530	6	NIC	ENSMUSG00000027404.17	novel	1161	7	NA	NA	-15	-9	intron_retention	FALSE	canonical	3	3295	junction_3	276.893770244114	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTGATATATTCATTT	NA	False	NA	NA	False	NA	NA	NA	130021269	130013563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130013864_130014522_130014649_130014955_130015680_130017249_130017362_130018934_130019087_130021153
33027	chr6	+	2810	12	NNC	ENSMUSG00000030095.11	novel	2903	12	NA	NA	-7	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	39.1162708425547	2	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATCTTTTGGTATTGG	9729	False	NA	NA	False	NA	NA	NA	91450725	91465420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459739_91462319_91462417_91463726
33028	chr17	-	4094	20	NNC	ENSMUSG00000023972.11	novel	4235	20	NA	NA	21136	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_19	114.586598879011	147	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTTGTTAGACCCTTC	NA	False	NA	NA	False	NA	NA	NA	46919294	46875396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46876422_46877028_46877208_46878850_46879003_46882528_46882610_46883447_46883681_46884345_46884502_46885197_46885402_46887189_46887318_46887417_46887569_46887686_46887837_46889975_46890096_46890218_46890355_46890492_46890627_46897126_46897394_46897639_46897789_46900937_46901089_46901186_46901378_46901684_46901788_46902440_46902729_46919198
33029	chr14	-	347	1	NIC	ENSMUSG00000022185.20	novel	2494	13	NA	NA	-4	-1810	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGGATTTTTTTGTTT	3768	False	NA	NA	False	NA	NA	NA	54891128	54890781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54890800_54891100
33031	chr19	+	1908	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	-20	0	-20	0	multi-exon	TRUE	canonical	3	251	junction_1	114.751906302248	1725	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3555	False	NA	NA	False	NA	NA	NA	4198597	4204034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
33033	chr2	+	2481	18	NNC	ENSMUSG00000002455.15	novel	3054	21	NA	NA	19252	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	108.851888196824	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	NA	False	NA	52	True	NA	NA	NA	181262417	181297454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273900_181274583_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
33034	chr7	-	2001	6	NIC	ENSMUSG00000047554.15	novel	2346	8	NA	NA	-3	-14	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	156.029484393175	4	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATACTGATCAATATTGT	NA	False	NA	NA	False	NA	NA	NA	109585497	109572705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109585416
33035	chr11	+	1695	8	ISM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	2256	0	2256	0	3prime_fragment	FALSE	canonical	3	373	junction_5	98.8414520991129	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	942	False	NA	NA	False	NA	NA	NA	101013019	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
33036	chr11	-	3084	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	-4	-790	-4	-34	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	2	132	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTATGAGGAAATAAAAGT	NA	False	NA	NA	False	NA	NA	NA	6576047	6565632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
33037	chr4	-	2970	8	NIC	ENSMUSG00000028896.14	novel	2278	11	NA	NA	-2	-1892	intron_retention	FALSE	canonical	3	61	junction_6	130.655177892819	2	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTTTTTTAATGTCTAT	5483	False	NA	NA	False	NA	NA	NA	132073014	132061125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132061571_132061795_132061916_132062055_132062853_132063027_132063125_132065041_132065222_132065361_132066553_132067235_132067318_132072956
33038	chr17	-	2635	4	NIC	ENSMUSG00000039183.7	novel	1423	7	NA	NA	-4	-3	intron_retention	FALSE	canonical	3	632	junction_1	56.7587487137935	33	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGATGTGGTCAAGGTG	NA	False	NA	NA	False	NA	NA	NA	25105327	25101595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25102289_25102779_25103210_25103374_25104812_25105252
33039	chr7	+	2072	13	FSM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	47	23	0	-1	multi-exon	FALSE	canonical	3	4757	junction_8	508.744178235868	264	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACTATTTGCTGGGGC	NA	False	NA	NA	False	NA	NA	NA	28510361	28521668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
33040	chr17	-	2198	18	NIC	ENSMUSG00000024056.11	novel	2201	17	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	1	8	junction_14	115.906208353772	804	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGTGTCCCCTCCCAT	NA	False	NA	NA	False	NA	NA	NA	71833802	71803099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830386_71830439_71830576_71830655_71832627_71832738_71833705
33041	chr18	+	2478	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	-20	-2	-16	2	multi-exon	FALSE	canonical	3	162	junction_13	17.5886149255705	36	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGACTTATTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	75151835	75420037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
33042	chr5	+	2729	10	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	455.043858963339	1	109	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111478623	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478727_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533445_111534375
33043	chr8	-	2427	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	21	99	-9	-99	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTAGAAACTTTAATTAT	7707	False	NA	NA	False	NA	NA	NA	111724411	111701726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
33044	chr7	-	2520	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	-22	-1	combination_of_known_splicesites	FALSE	canonical	3	19	junction_8	62.9638344166272	296	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGACCAACTTTATG	NA	False	NA	NA	False	NA	NA	NA	112968568	112914850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112968078_112968166_112968405
33045	chr2	+	2875	19	NNC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	-39	-194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.7227761133433	1	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGTAAGAAGAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	132658104	132685621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132658386_132658993_132659136_132659624_132659709_132661522_132661606_132661898_132662013_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
33046	chr11	+	2451	12	NNC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	63	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	404.576178608579	2	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCAGACCCTGGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	101207101	101214357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617_101212656_101212799
33047	chr15	-	618	2	FSM	ENSMUSG00000036678.9	ENSMUST00000230349.2	473	2	-10	-135	-2	135	multi-exon	FALSE	canonical	3	458	junction_1	0	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTAAAGCTGTGCTATC	NA	False	NA	NA	False	NA	NA	NA	102259132	102258099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_102258516_102258930
33048	chr15	-	2590	15	NNC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	1701	0	intron_retention	FALSE	non_canonical	0	0	junction_3	209.243596444578	15	128	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACCAGGATGTAACTCC	658	False	NA	NA	False	NA	NA	NA	102256814	102246691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102246941_102247075_102247161_102247251_102247336_102247620_102247689_102247759_102247848_102247961_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102256202_102256313
33050	chr19	-	530	1	Intergenic	novelGene_1202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGTCTTCAGACACACCA	NA	False	NA	NA	False	NA	NA	NA	6106719	6106189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_6106200_6106700
33051	chr9	+	1967	10	NNC	ENSMUSG00000111390.2	novel	3539	2	NA	NA	-1163	53046	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTCGGAGCGGAGAACCG	8967	False	NA	NA	False	NA	NA	NA	27008683	27066685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_27009697_27010006_27010065_27010142_27010273_27011406_27011482_27011593_27011648_27012532_27012737_27013159_27013315_27016803_27016915_27017642_27017710_27066585
33053	chr1	+	2101	9	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	3	0	combination_of_known_junctions	FALSE	non_canonical	1	46	junction_1	80.4478674359986	489	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097900	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
33054	chr18	-	4250	22	Antisense	novelGene_ENSMUSG00002076197.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	60	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAATTGGTCGGGGGAAT	NA	False	NA	NA	False	NA	NA	NA	42708667	42644553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_42644649_42652430_42652657_42655976_42656130_42656955_42657418_42663712_42663954_42669240_42669442_42669924_42670038_42671029_42671122_42681463_42681619_42682898_42682958_42683104_42683173_42685557_42685692_42686471_42686558_42693993_42694116_42697145_42697297_42700933_42701099_42701490_42701680_42704083_42704259_42704887_42704973_42706326_42706424_42707222_42707316_42707579
33056	chr12	+	2047	2	ISM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	13281	0	13281	0	3prime_fragment	FALSE	canonical	3	611	junction_1	0	1	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	6797	False	NA	NA	False	NA	NA	NA	102737506	102743966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_102737540_102741952
33057	chr16	-	2359	20	NNC	ENSMUSG00000022771.18	novel	2190	21	NA	NA	-7	-190	intron_retention	FALSE	non_canonical	0	0	junction_10	274.760827749106	2	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACACTTGGATTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	16929086	16904609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16904980_16906608_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910946_16912742_16912981_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
33058	chr2	+	3689	6	NIC	ENSMUSG00000044349.17	novel	1646	7	NA	NA	-7	-13	intron_retention	FALSE	canonical	3	5	junction_4	7.30479294709987	78	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTTCCTTAAGTTGCCT	NA	False	NA	NA	False	NA	NA	NA	158217610	158228052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_158217809_158218000_158218247_158218913_158218993_158222690_158222772_158222858_158225084_158227192
33059	chr14	+	2374	8	Antisense	novelGene_ENSMUSG00000041028.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	119	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAGAAAGGTAGAGGGGG	NA	False	NA	NA	False	NA	NA	NA	36842789	36855762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_36844184_36847117_36847258_36847837_36848051_36849546_36849639_36852583_36852735_36853494_36853607_36855127_36855227_36855589
33060	chr6	+	2075	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	0	-97	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	649.491009505575	1	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTCTTTGTTGTTTGCA	2943	False	NA	NA	False	NA	NA	NA	122285957	122294542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290380_122292015_122292107_122292249_122292394_122293008_122293136_122293286_122293342_122293394
33061	chr19	-	1877	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	14	217	14	-217	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	1	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGCCCTCAATCCGAGT	3777	False	NA	NA	False	NA	NA	NA	7017321	6998286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
33062	chr9	+	2279	16	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	100.374498753418	4	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	NA	False	NA	NA	NA	114230215	114303445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114246028_114246189_114249455_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
33063	chr6	+	2843	3	FSM	ENSMUSG00000085412.8	ENSMUST00000125374.8	391	3	-4	-2448	-4	1292	multi-exon	FALSE	canonical	3	144	junction_2	38	371	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGTACATTTCAGAT	774	False	NA	NA	False	NA	NA	NA	52079924	52091956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_52080017_52083750_52083877_52089331
33064	chr15	-	2683	8	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	-22	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	154.516494067059	7	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACATTCATGAAAGTTG	6911	False	NA	NA	False	NA	NA	NA	81244950	81203120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81212111_81223152_81223737_81224005_81224242_81228301_81228363_81244877
33065	chr11	+	4359	3	NNC	ENSMUSG00000040483.16	novel	415	4	NA	NA	4134	279	intron_retention	TRUE	canonical	0	0	junction_2	3	8	56	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCTTCCCAGTTCCCAC	NA	False	NA	NA	False	NA	NA	NA	72196624	72203186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72197479_72199432_72202820_72203068
33066	chr11	+	4203	22	FSM	ENSMUSG00000020536.13	ENSMUST00000052346.10	4303	22	86	14	-36	-14	multi-exon	FALSE	canonical	3	67	junction_21	57.9955428735457	167	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTTTAAACTACATCTG	NA	False	NA	NA	False	NA	NA	NA	60590634	60604998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599614_60599720_60600260_60600554_60600806_60600955_60601112_60601267_60602161_60602458_60602825_60603091_60603204_60603320_60603447_60603555_60603746_60603868_60603954
33067	chr13	-	2146	16	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	-12	-9	intron_retention	FALSE	canonical	3	642	junction_9	44.9204729370572	914	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGGACCAGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	55684346	55678237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683859_55684108_55684220_55684293
33070	chr6	+	1864	10	NNC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	229.535763371782	69	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	NA	False	NA	NA	NA	82923902	83007163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982546_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
33071	chr2	-	3004	17	NNC	ENSMUSG00000026669.15	novel	4867	20	NA	NA	-3259	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	287.565753350429	1	149	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAATGTACAACTTGAG	NA	False	NA	NA	False	NA	NA	NA	5013389	4995553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4997668_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003641_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011183_5011390_5011877_5012013_5012138_5012244_5013290
33073	chr14	+	1529	7	Fusion	ENSMUSG00000052334.12_ENSMUSG00000091116.2	novel	1573	6	NA	NA	28	74247	multi-exon	TRUE	canonical	0	0	junction_1	1.80277563773199	6	17	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCCCCTCCCTACTACCA	NA	False	NA	NA	False	NA	NA	NA	41765979	41966341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_41766287_41889018_41889151_41891123_41891256_41891935_41892118_41892943_41893035_41903688_41904348_41966315
33075	chr1	-	1456	6	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	5309	junction_1	729.658988843419	39	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16174626	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16171584_16171950_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
33076	chr7	+	2225	11	NNC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	33	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	378.363793193799	2	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCACATCTCATTCATTC	NA	False	NA	NA	False	NA	NA	NA	15832595	15851902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849580_15850473
33077	chr1	+	3530	8	NIC	ENSMUSG00000026634.17	novel	3714	9	NA	NA	48	-9	combination_of_known_junctions	FALSE	canonical	3	16	junction_5	64.6948882944284	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTACTGTTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	190660736	190679150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190675026_190675085_190675973_190676138_190677136
33078	chr11	-	2063	9	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-4	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.00403704235	251	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCCGATATTTCTTTCA	971	False	NA	NA	False	NA	NA	NA	79145501	79130208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79130435_79130573_79131291_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79141806_79141976_79145178
33079	chr10	-	3742	1	Intergenic	novelGene_3406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	216	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGGTGTCAGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	21934502	21930760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_21930800_21934500
33080	chr8	-	1847	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-36	-243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	438.293779901107	2	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTATTGTGTCTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	85573495	85568721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571109_85571216_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
33081	chr1	-	2111	15	FSM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	-43	0	-7	0	multi-exon	FALSE	canonical	3	87	junction_14	29.0531708199618	434	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	NA	False	NA	NA	NA	169359040	169325879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
33082	chr12	+	4635	14	NIC	ENSMUSG00000048285.10	novel	4662	14	NA	NA	-15	-18	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	34.6862522431374	1	79	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTTTTTGCCTTTAAGG	772	False	NA	NA	False	NA	NA	NA	70872272	70948990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924014_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
33083	chr17	+	389	1	Intergenic	novelGene_103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCTGAGCCGGGCGTGGT	NA	False	NA	NA	False	NA	NA	NA	24378078	24378467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_24378100_24378500
33084	chr17	-	1720	8	NNC	ENSMUSG00000002076.13	novel	2867	8	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_7	393.49786712074	93	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	NA	False	NA	NA	NA	32253476	32165055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253246
33085	chrX	-	3761	27	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	828	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	203.242953690533	1	196	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCTGGTGTTCGTGTAT	NA	False	NA	NA	False	NA	NA	NA	59223621	59101316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107647_59109981_59110036_59112514_59112608_59122540_59122763_59128218_59128328_59129747_59129854_59152812_59152909_59154800_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
33087	chr8	+	2304	1	ISM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	9687	8	9624	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATAACATCTTCATGTGTA	NA	False	NA	NA	False	NA	NA	NA	13929327	13931631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_13929300_13931600
33088	chr3	-	2247	6	ISM	ENSMUSG00000027752.16	ENSMUST00000150923.8	2316	8	873	0	149	0	3prime_fragment	FALSE	canonical	3	2135	junction_2	36.0144415478013	148	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	NA	False	NA	NA	NA	54641585	54636102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54640167_54641078_54641153_54641523
33089	chr13	+	4365	3	NIC	ENSMUSG00000045312.13	novel	4209	2	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	37	71	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTCAAGTTTGTTGGCT	NA	False	NA	NA	False	NA	NA	NA	94271245	94331918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_94271432_94310530_94311147_94328355
33090	chr7	+	2041	17	FSM	ENSMUSG00000002963.18	ENSMUST00000107876.8	1770	17	2	-273	2	-69	multi-exon	FALSE	canonical	3	28	junction_1	53.8118466859297	692	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTAGCCTGATGAGCCT	9317	False	NA	NA	False	NA	NA	NA	44506564	44512347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44506727_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
33091	chrX	-	3906	16	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	213	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCCGCCGCTGGCTGG	NA	False	NA	NA	False	NA	NA	NA	84248054	84091921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_84092065_84097575_84097651_84148695_84148956_84151190_84151273_84153550_84153707_84182933_84183105_84185335_84185452_84187639_84187772_84188516_84188556_84192735_84192795_84193819_84193887_84196633_84196789_84221303_84221545_84222295_84222428_84234211_84234317_84246081
33092	chr19	-	3107	18	NIC	ENSMUSG00000001750.17	novel	2688	20	NA	NA	35	0	intron_retention	FALSE	canonical	3	39	junction_11	8.75502821418308	133	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	3957077	3946049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952557_3952630_3952725_3952881_3952965_3953045_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
33094	chrX	+	2722	5	NIC	ENSMUSG00000023092.17	novel	2356	7	NA	NA	-7	-4	intron_retention	FALSE	canonical	3	22	junction_4	52.7227417724079	3	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAAAGAGCACGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	55777139	55838694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55835407_55837203
33095	chr6	+	1430	4	NIC	ENSMUSG00000068328.11	novel	1265	11	NA	NA	226	0	intron_retention	FALSE	canonical	3	992	junction_2	92.5790953125428	2	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	108	False	NA	NA	False	NA	NA	NA	83032920	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83032952_83033047_83033626_83033739_83034376_83034478
33096	chr11	-	2926	13	NNC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	81	-17	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	25.9422435421457	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATATTAAGGCACAATCT	NA	False	NA	NA	False	NA	NA	NA	121563898	121507039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563650
33097	chr17	-	1196	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	238	28	0	-1	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	97	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTGTGGTCTAGTATT	9927	False	NA	NA	False	NA	NA	NA	29482922	29469804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
33098	chr18	-	2430	2	Antisense	novelGene_ENSMUSG00000019143.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTGGCTTTGGGATAG	NA	False	NA	NA	False	NA	NA	NA	36924918	36922270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_36923302_36923519
33099	chr11	-	2511	3	NIC	ENSMUSG00000020910.17	novel	1531	5	NA	NA	-14	7	intron_retention	FALSE	canonical	2	8	junction_2	50.5	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGCATATACTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	66943434	66928723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_66929272_66931044_66932934_66943360
33100	chr14	+	3679	19	NNC	ENSMUSG00000021911.17	novel	4413	18	NA	NA	4	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	134.148445967725	4	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATAAATCATTTGTCAG	NA	False	NA	NA	False	NA	NA	NA	31923909	32019154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31924143_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146_32018890_32018986
33101	chr19	+	2393	4	Fusion	ENSMUSG00000108414.2_ENSMUSG00000064721.6	novel	854	5	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_1	456.794872514519	16	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTATTGTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	8700850	8703804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8700922_8700962_8702086_8702377_8702621_8702848
33102	chr11	-	2145	5	ISM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	209	-14	-16	14	intron_retention	FALSE	canonical	3	985	junction_3	61.9732805328232	17	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCCTGGGTTTCCCTAAC	NA	False	NA	NA	False	NA	NA	NA	117716709	117706337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496
33103	chr9	-	2323	15	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.9045458646677	58	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	NA	False	NA	NA	NA	53159391	53009934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010076_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
33104	chr11	-	2549	2	NNC	ENSMUSG00000034120.19	novel	1814	2	NA	NA	4	-11	intron_retention	FALSE	non_canonical	0	0	junction_1	0	48	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCTTTTTTGAGAATGTG	6007	False	NA	NA	False	NA	NA	NA	116743916	116740742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116743052_116743676
33105	chr4	-	2338	7	NNC	ENSMUSG00000028807.3	novel	2321	5	NA	NA	245	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	71.2423485170318	27	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATCTTTTTCGTGACAC	NA	False	NA	NA	False	NA	NA	NA	129271664	129247425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129248298_129251497_129251668_129253690_129254494_129261014_129261178_129261322_129261427_129263021_129263116_129271532
33106	chr17	-	3967	28	FSM	ENSMUSG00000040356.17	ENSMUST00000046022.16	3951	28	-16	0	-16	0	multi-exon	FALSE	canonical	3	88	junction_20	16.8071446039882	96	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTGGAGTATGGTAACT	5289	False	NA	NA	False	NA	NA	NA	35069202	35058219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35065972_35066118_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
33107	chr11	+	3718	24	FSM	ENSMUSG00000005417.18	ENSMUST00000116371.8	8766	24	411	4637	411	-6	multi-exon	TRUE	canonical	3	400	junction_2	48.3490381455828	192	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAAGCCCCGGCCCCTCTC	237	False	NA	NA	False	NA	NA	NA	59553743	59667043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_59553775_59586951_59587030_59587783_59587850_59618377_59618530_59622333_59622419_59626655_59626891_59627897_59628055_59631945_59632088_59632816_59632925_59634596_59634654_59635577_59635647_59639372_59639463_59640344_59640455_59643315_59643887_59645818_59645936_59655205_59655354_59656233_59656352_59657553_59657714_59658780_59658901_59660038_59660126_59660709_59660873_59662442_59662529_59662977_59663044_59666341
33109	chr10	-	2301	8	NIC	ENSMUSG00000034748.17	novel	1667	9	NA	NA	-79	-18	intron_retention	FALSE	canonical	3	27	junction_7	72.5548349983146	39	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTTCCATTCTTTTACA	9810	False	NA	NA	False	NA	NA	NA	81463479	81457638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81462725
33110	chr13	-	3813	7	NIC	ENSMUSG00000003062.14	novel	1074	8	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	699	junction_6	55.5660267909568	7	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGATTGTGTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	19579933	19541849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_19542300_19543147_19543222_19551913_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
33112	chr4	-	1390	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	729.869946558213	251	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093136_41093507_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
33113	chr14	+	1961	2	ISM	ENSMUSG00000035960.15	ENSMUST00000128395.2	1036	4	-304	6	3	-6	intron_retention	FALSE	canonical	3	1160	junction_1	0	132	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCAGCTTGGCTTTCTTT	192	False	NA	NA	False	NA	NA	NA	51162437	51164590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_51162782_51162973
33114	chr4	+	1831	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	22	136	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	247.894457828775	1	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	10003	False	NA	NA	False	NA	NA	NA	155954045	155973326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971934_155972363_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
33115	chr11	+	3023	23	NIC	ENSMUSG00000059439.16	novel	2769	24	NA	NA	-21	206	combination_of_known_junctions	FALSE	canonical	1	1	junction_22	28.0667739801512	6	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGATCATGCCATATAT	3457	False	NA	NA	False	NA	NA	NA	85243971	85494076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722_85474821_85493571
33116	chr1	-	2319	13	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	406.934747703964	1	57	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624029	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611675_177612461_177612565_177623958
33117	chr17	-	845	5	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	1	intron_retention	FALSE	non_canonical	0	0	junction_1	4295.96882990322	249	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884177	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879009_45882006_45882104_45882338_45882546_45882690_45882838_45884092
33120	chr13	-	4091	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	58	-29	30	29	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	43	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTAGTTTCTCAGTGGG	NA	False	NA	NA	False	NA	NA	NA	98399491	98383323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
33121	chr8	-	1419	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	107	55	101	-55	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAAGGCCATGTATTGTT	NA	False	NA	NA	False	NA	NA	NA	108314989	108307067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
33122	chr19	+	2261	6	NIC	ENSMUSG00000071655.13	novel	1127	8	NA	NA	28	-1	intron_retention	FALSE	canonical	3	1115	junction_2	118.438844979171	12	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTGTATATGCCTGGCT	5877	False	NA	NA	False	NA	NA	NA	8848887	8853019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8849277_8849371_8849652_8850877_8851070_8851158_8851211_8851502_8852717_8852885
33123	chr6	-	2408	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	122	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1217.66865772262	1	121	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTCAGGTTGGGAGATAA	8607	False	NA	NA	False	NA	NA	NA	145021788	144944899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980435_144985227_144985362_144993017_144993090_145021614
33124	chr3	+	3892	6	ISM	ENSMUSG00000028124.16	ENSMUST00000029769.14	5589	7	9992	1138	-38	-1138	3prime_fragment	FALSE	canonical	3	413	junction_1	52.1559200858349	160	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTATGACTTTAAACTTAT	4716	False	NA	NA	False	NA	NA	NA	122049197	122063243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_122049260_122052855_122052941_122055516_122055577_122056248_122056452_122058442_122058558_122059876
33125	chr16	-	2561	8	ISM	ENSMUSG00000022962.16	ENSMUST00000156713.8	3246	21	13398	9	-6731	2	3prime_fragment	FALSE	canonical	3	1474	junction_5	99.1274174885999	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACTTATCTAGCATT	NA	False	NA	NA	False	NA	NA	NA	91426636	91418289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309
33127	chr14	-	1386	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	327	168	-9	137	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	2	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTATCTCTCGGGATCTG	NA	False	NA	NA	False	NA	NA	NA	63746214	63729963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
33130	chr9	+	2708	21	FSM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	-1	4	-1	-4	multi-exon	FALSE	canonical	3	211	junction_10	27.9819584732735	47	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTAAAATGTCTCGACAA	NA	False	NA	NA	False	NA	NA	NA	83716740	83751542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
33131	chr8	+	2170	4	ISM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	12450	7	-206	-7	3prime_fragment	FALSE	canonical	3	166	junction_3	4.98887651569859	15	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACAATTTCTTGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	95577398	95581516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_95578584_95579742_95579899_95580232_95580287_95580741
33132	chr6	-	3087	21	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	194.72859959441	3	110	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	-9	True	NA	NA	False	NA	NA	NA	29609634	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541316_29554930_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575135_29578458_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
33133	chr17	+	1535	5	NNC	ENSMUSG00000036036.16	novel	1991	6	NA	NA	0	-20	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1309.76543701535	35	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313445	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313514_37314177_37314208_37315688_37315796_37316950_37317087_37320310
33134	chr11	-	1634	7	NIC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	1240	intron_retention	FALSE	canonical	3	2432	junction_6	255.063826434788	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAGGCGGACTTTAAGAC	9743	False	NA	NA	False	NA	NA	NA	106890290	106881203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106881699_106881894_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
33135	chr9	-	3308	20	FSM	ENSMUSG00000057969.16	ENSMUST00000102532.10	3191	20	0	-117	0	117	multi-exon	TRUE	canonical	2	3	junction_18	17.1961150028469	121	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAACGGGTGGTGTTTG	4331	False	NA	NA	False	NA	NA	NA	107486428	107475298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107484232_107484292_107486319
33136	chr7	+	1668	17	Antisense	novelGene_ENSMUSG00000036427.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGTTCCGGGTGAGCG	NA	False	NA	NA	False	NA	NA	NA	33901745	33929611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_33901975_33902061_33902129_33902239_33902313_33903450_33903583_33904992_33905072_33905232_33905360_33907029_33907204_33907684_33907711_33915377_33915434_33917721_33917768_33918455_33918530_33920040_33920189_33920270_33920348_33926549_33926664_33928362_33928426_33928710_33928799_33929516
33137	chr8	+	1507	11	ISM	ENSMUSG00000042870.16	ENSMUST00000078847.13	1769	16	-39	9993	-7	727	5prime_fragment	FALSE	canonical	2	8	junction_10	97.3421285980536	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTAGCAGTCATTATC	NA	False	NA	NA	False	NA	NA	NA	75760325	75786218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75785816
33138	chr2	+	3839	9	NNC	ENSMUSG00000027582.17	novel	3666	11	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	58.4417444982608	59	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGCTCTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	181007199	181025421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181007286_181007437_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181023947_181024774_181024954_181025050
33140	chr2	-	1272	8	ISM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	4420	1018	4420	-1018	internal_fragment	FALSE	canonical	3	11792	junction_7	900.750072926753	4	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTTGAAGTCGATCTGT	8205	False	NA	-22	True	NA	NA	NA	154730282	154714355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102
33141	chr13	-	3205	13	Antisense	novelGene_ENSMUSG00000021671.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	169	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGCCCTGATGAAAGACA	NA	False	NA	NA	False	NA	NA	NA	96552081	96524830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_96525038_96526728_96526869_96528093_96528182_96529732_96530045_96530976_96531076_96533145_96533337_96535199_96535377_96537255_96537363_96538083_96538263_96539386_96539540_96540911_96541191_96547096_96547273_96550984
33142	chr4	-	3542	12	Fusion	ENSMUSG00000078588.11_ENSMUSG00000028541.15	novel	4093	13	NA	NA	-329	31300	intron_retention	FALSE	non_canonical	0	0	junction_1	0	97	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCCCCTGGCCGCCCTCC	NA	False	NA	NA	False	NA	NA	NA	117726499	117692420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_117692673_117700213_117700332_117713069_117713227_117713884_117714017_117714397_117714669_117720623_117721019_117721107_117721213_117721600_117722084_117722192_117722294_117722391_117722494_117724955_117725121_117725238
33144	chr4	+	607	1	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	28867	374	4865	-374	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTCTGCACGGAGTCTC	4636	False	NA	NA	False	NA	NA	NA	129112419	129113026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_129112400_129113000
33146	chr1	+	2299	7	NIC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	-2	-7	intron_retention	FALSE	canonical	3	167	junction_1	23.5772960470214	3	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCACCTTTGCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	171097921	171104460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171097985_171098772_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
33147	chr15	+	3051	2	NIC	ENSMUSG00000034259.9	novel	1728	3	NA	NA	15	-24	intron_retention	FALSE	canonical	3	661	junction_1	0	6	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTATTAAAGGTCAGAATGT	962	False	NA	NA	False	NA	NA	NA	76211679	76214849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76213437_76213555
33148	chr3	-	2845	8	NIC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	-18	-38	intron_retention	FALSE	canonical	3	35	junction_7	105.155666921542	38	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAGGCCTCGAGGCCAA	3719	False	NA	NA	False	NA	NA	NA	89319195	89309313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
33149	chr9	+	1876	6	NIC	ENSMUSG00000032044.5	novel	1821	7	NA	NA	15	-4	intron_retention	FALSE	canonical	3	136	junction_5	9.97196068985433	628	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTTTTTAATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	35179175	35187257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35184143_35184763_35184862_35186359
33150	chr1	-	2653	11	NIC	ENSMUSG00000026019.16	novel	10012	13	NA	NA	7	2566	intron_retention	FALSE	canonical	3	863	junction_10	61.0602980667471	13	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGAATTTACAAATTACT	NA	False	NA	NA	False	NA	NA	NA	60137060	60119677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_60119751_60121195_60121329_60121449_60121556_60121667_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
33151	chr4	-	1950	6	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	-17	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.591605606472	4709	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATGCATTGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	148172505	148161522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148161653_148163710_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
33152	chr16	-	2581	10	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	804	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	498.421954215948	1	118	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATATGAAGTAGGCAT	NA	False	NA	NA	False	NA	NA	NA	15452366	15441765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446567_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302
33154	chr3	+	4225	18	NNC	ENSMUSG00000007379.16	novel	4979	19	NA	NA	4442	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	67.3356515183296	1	176	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTCCCACAGATCT	9159	False	NA	NA	False	NA	NA	NA	103039313	103077047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103039648_103040530_103040655_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
33156	chr11	-	1768	9	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-22	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.256170474084	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCCCCAGAGCTCCAGT	NA	False	NA	NA	False	NA	NA	NA	120534552	120530242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120531029_120531098_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
33157	chr7	+	2322	19	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	63	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	108.90595104419	28	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	1053	False	NA	NA	False	NA	NA	NA	97130282	97190605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179544_97190441
33158	chr4	-	3944	6	Fusion	ENSMUSG00000073705.11_ENSMUSG00000028971.5	novel	1110	5	NA	NA	-21	-163	intron_retention	FALSE	canonical	3	22	junction_1	152.355374043714	998	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGCGGGGAGCTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	149222055	149209653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_149211603_149211738_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
33159	chr16	-	1553	12	NIC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	1	20	junction_7	520.33210945725	11	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCTGAATTTCTCCGA	9171	False	NA	NA	False	NA	NA	NA	91525520	91486209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
33160	chr13	+	1845	9	ISM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	-18	2	-18	0	intron_retention	FALSE	canonical	3	605	junction_5	24.4079904949178	25	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAGCTTAATTACATTT	NA	False	NA	NA	False	NA	NA	NA	41154480	41166489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809
33161	chr11	+	2673	10	NIC	ENSMUSG00000040463.17	novel	4014	24	NA	NA	-903	-218	intron_retention	FALSE	canonical	3	2480	junction_3	173.106261521003	1	106	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72338139	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340660_72340818_72340921_72341451_72341601_72341702
33162	chr1	-	2624	20	NNC	ENSMUSG00000026198.16	novel	2966	19	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	36.0815481422775	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGGCTGTGGTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	75157025	75148362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213_75156425_75156753
33163	chr9	-	1714	6	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	74	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2202.07507592271	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTGAACAAAATGTGAGTA	NA	False	NA	NA	False	NA	NA	NA	110775069	110768682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771507_110771593_110771713_110772272_110772322_110773258_110773312_110774891
33165	chrX	-	1591	5	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-13	452	intron_retention	FALSE	canonical	3	1767	junction_3	178.105832302033	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCTATTATATAGTAGG	NA	False	NA	NA	False	NA	NA	NA	72974375	72971392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72971595_72971884_72971967_72972721_72973460_72973610_72974124_72974319
33166	chr14	+	2724	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	37.1563848991732	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	55797972	55807521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55798276_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
33167	chr4	-	2438	2	FSM	ENSMUSG00000066042.5	ENSMUST00000123604.2	626	2	-588	-1224	2	0	multi-exon	FALSE	canonical	3	267	junction_1	0	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1049	False	NA	NA	False	NA	NA	NA	132191230	132186041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132187425_132190175
33168	chr5	+	1871	6	NNC	ENSMUSG00000029581.15	novel	2157	6	NA	NA	13	0	intron_retention	FALSE	non_canonical	0	0	junction_5	1109.30194266485	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCGTGTGTGTCTCAGG	NA	False	NA	NA	False	NA	NA	NA	142946110	142958938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650_142958020_142958808
33170	chr4	-	2334	6	Antisense	novelGene_ENSMUSG00000028691.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGCGCGCGCGGGGAGCT	793	False	NA	NA	False	NA	NA	NA	116556662	116542795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_116542855_116544600_116545002_116547801_116549126_116550078_116550199_116550909_116551043_116556365
33171	chr13	+	1997	4	NNC	ENSMUSG00000093930.3	novel	3245	10	NA	NA	14012	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	294.177195279006	2	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120166011	120169618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120166068_120166592_120166683_120166890_120167048_120167924
33172	chrX	-	3530	18	FSM	ENSMUSG00000031174.18	ENSMUST00000044598.13	3805	18	268	7	81	-7	multi-exon	FALSE	canonical	0	0	junction_4	38.2060521664478	2	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGATATGTGCTTGGA	NA	False	NA	NA	False	NA	NA	NA	10082891	10024461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10042241_10043121_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
33173	chr2	+	2278	13	NNC	ENSMUSG00000026917.16	novel	2890	14	NA	NA	48	-503	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	432.546015535406	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATGTGTATTGAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	27405216	27426044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423375_27423424_27423779_27423868_27424768
33174	chr16	+	1672	9	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCGGATGTGACGCCAC	5947	False	NA	NA	False	NA	NA	NA	22064958	22084679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065615_22065937_22066016_22067187_22067248_22067799_22067886_22069615_22069730_22071355_22071545_22073156_22073327_22073737_22073867_22084489
33175	chr7	+	1583	4	ISM	ENSMUSG00000006333.15	ENSMUST00000146927.2	813	5	-306	5	6	-5	intron_retention	FALSE	canonical	3	206	junction_3	6807.60961473752	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTTTATTGGTGTG	1329	False	NA	NA	False	NA	NA	NA	3707056	3709888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709006
33176	chr12	-	1690	11	NNC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	18	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	319.408531507848	20	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGTATATGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	36206806	36141839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36142309_36154294_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
33177	chr4	+	2921	12	NNC	ENSMUSG00000028550.16	novel	3178	11	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	27.622005839757	2	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAGACACTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	99082386	99148018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99082690_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112796_99116792_99116872_99117724_99117802_99123303_99123424_99146633_99147453_99147495
33178	chr16	+	2228	10	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-406	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1088.53211842348	3	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	3081	False	NA	NA	False	NA	NA	NA	20355955	20362657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360844_20360946_20361045_20361388_20361501_20362060
33179	chr5	-	1585	9	NNC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	458	-446	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	325.772927051957	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGATACGGTATTGCC	NA	False	NA	NA	False	NA	NA	NA	124716597	124708721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124715357_124715511_124716499
33180	chr10	-	2827	24	FSM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	7	0	7	0	multi-exon	FALSE	canonical	3	46	junction_14	14.5196561901106	107	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	9998	False	NA	NA	False	NA	NA	NA	128579937	128556002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128579664
33181	chr19	+	2530	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	41	-1765	-5	1765	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	9	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAGGCAGAGTTATCTCTG	NA	False	NA	NA	False	NA	NA	NA	8866257	8870010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
33182	chr9	+	1135	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	103	2	103	-2	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	3585	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGGCTCACCTTAGGTT	1486	False	NA	NA	False	NA	NA	NA	66033995	66046235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
33183	chr14	-	2924	7	FSM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	85	1162	-1	-1162	multi-exon	FALSE	canonical	0	0	junction_3	212.21091447478	74	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTGACAACATGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	47059614	47046767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
33184	chr2	+	2623	3	NNC	ENSMUSG00000045822.5	novel	2708	2	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	41.5	383	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGTTTGTGTTTTTTGAG	3066	False	NA	NA	False	NA	NA	NA	164647020	164664047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164647093_164647171_164647352_164661676
33185	chr11	-	1216	9	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6796.73371922131	4	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113075	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106781_33110306_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
33186	chr18	-	2230	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	1	-1354	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	338.785551639972	3	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACCAAAAAAAAATTCAAAGA	NA	False	NA	NA	False	NA	NA	NA	35065059	35037191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042337_35042932_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
33187	chr16	-	2609	4	Antisense	novelGene_ENSMUSG00000099908.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	53	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGAGCCTCTGTATTACC	NA	False	NA	NA	False	NA	NA	NA	18665068	18659084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18659221_18659431_18659633_18662469_18663519_18663845
33188	chrX	+	2335	7	FSM	ENSMUSG00000063785.13	ENSMUST00000125966.8	2138	7	0	-197	0	197	multi-exon	FALSE	canonical	3	18	junction_6	135.426999605774	101	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCAAGACAGCCAGGGCT	NA	False	NA	NA	False	NA	NA	NA	47345773	47357043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47355291
33189	chr16	+	2428	11	NNC	ENSMUSG00000022721.20	novel	2805	11	NA	NA	-29	1	intron_retention	FALSE	non_canonical	0	0	junction_6	110.551390764657	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCTGTGGTGAACCAG	359	False	NA	NA	False	NA	NA	NA	18066836	18071363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069982_18070113_18070265_18070342_18070669_18070700_18070787_18070885_18070963
33190	chr4	+	2382	6	NNC	ENSMUSG00000034042.17	novel	3588	12	NA	NA	18	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	120.773507028653	223	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTTTAGTGCCCAGGA	NA	False	NA	NA	False	NA	NA	NA	116414872	116451096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431756_116450350
33191	chrX	+	1106	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	113	21	110	-21	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAATACCCAAAACC	NA	False	NA	NA	False	NA	NA	NA	36059416	36062439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
33192	chr13	-	3726	8	FSM	ENSMUSG00000021364.17	ENSMUST00000021793.15	3840	8	0	114	0	4	multi-exon	FALSE	canonical	3	52	junction_4	7.79848232226067	71	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGCAACTTTTCTTAT	7559	False	NA	NA	False	NA	NA	NA	41373881	41335970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373830
33194	chr19	-	2750	3	NNC	ENSMUSG00000006456.11	novel	3165	3	NA	NA	424	-5	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	170.5	76	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAACCTGGTTGTCATTGT	8311	False	NA	NA	False	NA	NA	NA	4861116	4850954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4851834_4852578_4854044_4860710
33195	chr15	+	1763	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-27	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	506.738070626455	1	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959420	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961159_78962322_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
33196	chr13	+	2065	17	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	3	18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	262.261074301449	1	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTCTTGACAAAAAAAAAAA	1312	False	NA	NA	False	NA	NA	NA	59733210	59782584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59733274_59733966_59734096_59745829_59745969_59747542_59747597_59757321_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
33197	chr9	+	4169	1	ISM	ENSMUSG00000034275.19	ENSMUST00000214357.2	16144	20	54166	8	26430	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	76	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAAAGTTTGTTTCCTA	NA	False	NA	NA	False	NA	NA	NA	27264665	27268834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_27264700_27268800
33199	chr7	-	1714	9	NIC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	4	intron_retention	FALSE	canonical	3	2113	junction_3	108.517783680833	121	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTCTTCTTAGGTGT	NA	False	NA	NA	False	NA	NA	NA	27749481	27741136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27741346_27741525_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
33200	chr7	+	1490	7	NIC	ENSMUSG00000033685.14	novel	742	4	NA	NA	-59	323	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	173.154795871594	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	NA	False	NA	NA	NA	100145226	100148832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_100145415_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
33201	chr2	+	2472	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.7464299989793	1	100	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	NA	False	NA	NA	NA	152068801	152123772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092328_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152121465_152123148
33202	chr7	-	3524	6	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.6061938415117	67	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAAATTGGTGTGTGTGT	3416	False	NA	NA	False	NA	NA	NA	29553101	29542676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29543082_29543253_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552701
33203	chr11	+	1828	9	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	24	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	424.484521949859	21	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4823974	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834113_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
33204	chr11	-	2811	15	FSM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	-2	0	-2	0	multi-exon	FALSE	canonical	1	11	junction_10	13.5103890486136	103	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6246	False	NA	NA	False	NA	NA	NA	78067503	78056931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78061915_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
33205	chr15	+	3206	3	Antisense	novelGene_ENSMUSG00000022362.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGCTGG	NA	False	NA	NA	False	NA	NA	NA	57885678	57894801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_57885962_57888671_57888802_57892008
33207	chr7	+	2392	19	Fusion	ENSMUSG00000040811.16_ENSMUSG00000065543.3	novel	593	5	NA	NA	24	1	multi-exon	FALSE	canonical	3	11	junction_1	34.4726139291918	217	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCTGGAGTCTGGTCTA	NA	False	NA	NA	False	NA	NA	NA	18915280	18940405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_18915474_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
33208	chr11	-	2748	6	NNC	ENSMUSG00000020448.17	novel	2787	7	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	74.5852532341347	4	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTACTGTGAGTGTGGAGC	6811	False	NA	NA	False	NA	NA	NA	3402367	3365986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3368088_3369861_3369980_3375281_3375333_3376565_3376673_3382408_3382621_3402208
33209	chr3	+	1308	6	NNC	ENSMUSG00000027879.10	novel	2810	5	NA	NA	10	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	137.190378671392	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTATATAGTATTGCTTG	NA	False	NA	NA	False	NA	NA	NA	97808552	97829178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815_97821963_97828431_97829079_97829119
33210	chr7	+	2031	10	NNC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	-281	-39	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	649.005468979601	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTATTGACCATGGCC	NA	False	NA	NA	False	NA	NA	NA	16516041	16532160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_16516401_16516480_16516564_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
33211	chr13	+	3222	4	NNC	ENSMUSG00000090659.10	novel	3258	4	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	16.0485374896143	54	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCAAAATTGATTTTGG	NA	False	NA	NA	False	NA	NA	NA	67927831	67937191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_67927939_67931908_67932036_67932512_67932587_67934277
33212	chr8	+	4295	32	NNC	ENSMUSG00000004565.16	novel	4438	34	NA	NA	78	3	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_1	61.3672691861657	3	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGCCTGGTGCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	3566951	3594263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3567143_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3573998_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
33214	chr5	+	2948	19	FSM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	-3	0	-3	0	multi-exon	TRUE	canonical	3	2428	junction_3	310.145868707844	779	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGTCCTGATCTCTT	NA	False	NA	NA	False	NA	NA	NA	140405079	140429115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428192_140428628
33215	chr3	-	1799	13	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	2	180	intron_retention	FALSE	canonical	3	11	junction_12	245.456151322843	182	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACGCTTCTCAATTCCTG	NA	False	NA	NA	False	NA	NA	NA	88858413	88830761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858175
33216	chr14	-	1608	6	NNC	ENSMUSG00000060373.16	novel	1683	9	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1635.98503660639	5	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAAGGAAAGACAATTTT	8750	False	NA	NA	False	NA	NA	NA	52341460	52311906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312870_52313069_52313341_52319284_52319361_52321571_52321849_52341345
33217	chr4	-	1966	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	-168	7	-168	-7	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	904	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGATGACTCATACAAT	NA	False	NA	NA	False	NA	NA	NA	62443473	62440892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
33218	chr8	+	2225	10	FSM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	-36	0	-36	0	multi-exon	FALSE	canonical	3	858	junction_2	66.8792905627208	520	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAACCTGTCACCGTA	2550	False	NA	NA	False	NA	NA	NA	123294717	123299867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
33219	chr10	-	1702	11	NNC	ENSMUSG00000019814.6	novel	2297	11	NA	NA	69	-457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	220.948500786948	14	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAATTGGTGTGCTCATTT	NA	False	NA	NA	False	NA	NA	NA	13068843	13054340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055845_13056668_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
33221	chr16	-	2821	10	FSM	ENSMUSG00000003527.10	ENSMUST00000003621.10	2821	10	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_7	18.4397584408805	389	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTTTCTATCAATTGT	NA	False	NA	NA	False	NA	NA	NA	17729212	17718572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725787_17727768_17727865_17727951_17728121_17729025
33222	chr4	-	2371	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	0	1	0	1	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	317	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGTTCCTTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	107780807	107761178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
33223	chr1	+	2571	7	NIC	ENSMUSG00000026172.13	novel	1679	8	NA	NA	-11	0	intron_retention	FALSE	canonical	3	106	junction_1	16.0381489649592	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGTACCTACAAGATCTA	1205	False	NA	NA	False	NA	NA	NA	74627521	74631348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
33224	chr1	+	4528	3	NNC	ENSMUSG00000104340.2	novel	1163	3	NA	NA	-2165	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	35	29	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATTTTGTTTTTACTCTT	NA	False	NA	NA	False	NA	NA	NA	170807347	170814033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_170810833_170811302_170811532_170813219
33225	chr12	-	1880	15	Antisense	novelGene_ENSMUSG00000113223.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGACTCCGCCCCGCGG	NA	False	NA	NA	False	NA	NA	NA	99921468	99850784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_99850808_99857431_99858004_99859875_99859919_99860966_99861020_99864517_99864618_99868604_99868642_99872294_99872387_99875936_99876106_99876541_99876612_99877841_99878037_99878528_99878557_99881777_99881815_99901261_99901367_99911498_99911606_99921219
33227	chrX	+	2312	16	NIC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	74	-22	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	340.585274034109	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACAATAAAACCTTTTAC	NA	False	NA	NA	False	NA	NA	NA	154045574	154080620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_154045671_154046363_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
33230	chr15	-	1306	1	Antisense	novelGene_ENSMUSG00000022142.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACAAACAAGAGCAGTCT	NA	False	NA	NA	False	NA	NA	NA	8144991	8143685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_8143700_8145000
33231	chr18	-	2147	9	Antisense	novelGene_ENSMUSG00000089296.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACGCCCCTCCTCCGCCG	NA	False	NA	NA	False	NA	NA	NA	38449925	38430237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_38430484_38432805_38432977_38433478_38433643_38434707_38434856_38440912_38441452_38442539_38442765_38446262_38446435_38447722_38447854_38449574
33232	chr7	+	1465	9	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2722.83995811359	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGGCTCTGCTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	46495264	46505047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400_46504596_46504712
33233	chr7	+	2719	1	ISM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	8847	2	8796	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAGAAAAAATATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	139714416	139717135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_139714400_139717100
33236	chr15	+	4069	1	ISM	ENSMUSG00000054263.13	ENSMUST00000171588.2	9655	19	39063	5	39063	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	79	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAGTAAATTTGGACATT	6558	False	NA	NA	False	NA	NA	NA	7222896	7226965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_7222900_7227000
33237	chr4	-	2174	10	NNC	ENSMUSG00000028436.9	novel	3442	9	NA	NA	56	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.720808298664	47	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGTTTGAGTGACTATA	3	True	NA	NA	False	NA	NA	NA	41314833	41291301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41291612_41292821_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
33238	chr12	+	1150	1	Intergenic	novelGene_4285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCTGGGAGGGGGAAGG	NA	False	NA	NA	False	NA	NA	NA	3379037	3380187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_3379000_3380200
33239	chr2	-	2756	15	NIC	ENSMUSG00000027010.17	novel	2392	17	NA	NA	-234	-59	combination_of_known_junctions	FALSE	canonical	3	45	junction_14	23.2199992968764	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAATTCATTCTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	71159418	71105092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777
33240	chr12	+	2595	10	FSM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	12	2	12	-2	multi-exon	FALSE	canonical	3	160	junction_3	20.0277585143997	223	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTAGTGTTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	55883120	55916519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55914946
33241	chr9	+	2221	18	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	45	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGAGCCCGGCGGCGAC	NA	False	NA	NA	False	NA	NA	NA	61824563	61854019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61824866_61832389_61832426_61832811_61832968_61833639_61833803_61834319_61834446_61834629_61834750_61834835_61834919_61836945_61837048_61839081_61839204_61839355_61839472_61840510_61840551_61842659_61842832_61843943_61844053_61844361_61844496_61844707_61844818_61851476_61851608_61852627_61852705_61853897
33245	chrX	-	334	1	NIC	ENSMUSG00000002010.18	novel	829	9	NA	NA	31	-5279	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCCTGGAACTCACACTG	NA	False	NA	NA	False	NA	NA	NA	72830197	72829863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72829900_72830200
33246	chrX	-	2184	11	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-2121	-11	intron_retention	FALSE	canonical	1	18	junction_10	426.972083396561	2	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCCAGAACTTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	72828095	72822579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72827286
33247	chr6	-	2130	14	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	410.979418998369	1	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCATCTTGAAAGGTC	-7	True	NA	NA	False	NA	NA	NA	30509754	30482415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482968_30487366_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494742_30494834_30497866_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
33249	chr4	-	1025	5	Antisense	novelGene_ENSMUSG00000028478.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	113	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGGAGGACGAGCGAGAAG	NA	False	NA	NA	False	NA	NA	NA	44032842	44012695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_44013007_44018810_44018849_44019871_44019991_44025445_44025558_44032397
33250	chr4	+	3039	6	NNC	ENSMUSG00000085334.8	novel	1970	3	NA	NA	11812	9633	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	116	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTGAGAAATAGGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	126941386	126952824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126943700_126944356_126944397_126944538_126944666_126945067_126945215_126948002_126948176_126952585
33251	chr8	-	2038	5	NIC	ENSMUSG00000031796.8	novel	1295	6	NA	NA	-6	-1	intron_retention	FALSE	canonical	3	468	junction_1	23.0054341406547	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATCTTTACTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	96161430	96146877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_96147298_96147763_96148875_96149410_96149523_96151244_96151325_96161115
33252	chr4	+	2897	17	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	197.231740282846	1	115	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5273	False	NA	NA	False	NA	NA	NA	108436651	108472030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452851_108454447_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469251_108469418_108470265_108470354_108471477
33254	chr14	+	3698	4	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.494107593803	7	161	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTCTTTGTGTATTT	9644	False	NA	NA	False	NA	NA	NA	47535739	47560552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535877_47547871_47548571_47556868_47557324_47558145
33255	SIRV7	-	2153	7	NNC	SIRV7A	novel	2247	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1369.29783303544	1	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	NA	NA	NA	114916	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1791_1880_2676_2993_3115_4102_4180_4725_4811_43028_43078_114680
33256	chr10	+	3759	22	FSM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	12	4	-4	-4	multi-exon	FALSE	canonical	3	34	junction_1	71.0521510108266	910	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAATCTACTGTA	2283	False	NA	NA	False	NA	NA	NA	127478866	127496822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127479119_127482759_127482897_127483553_127483693_127483974_127484059_127486564_127486704_127486821_127486875_127487025_127487175_127487818_127487951_127488059_127488249_127488853_127488942_127489075_127489199_127490794_127490888_127491165_127491373_127492792_127492888_127492976_127493114_127493424_127493572_127494065_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
33257	chrX	-	3269	30	FSM	ENSMUSG00000009670.12	ENSMUST00000009814.10	3250	30	-22	3	6	-3	multi-exon	TRUE	canonical	3	57	junction_17	8.2193472636908	68	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCCCATTGATCAGCTG	NA	False	NA	NA	False	NA	NA	NA	100103267	99882256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920215_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
33258	chr11	+	2184	2	Antisense	novelGene_ENSMUSG00000053113.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGGAGCTGCAGAGAGCA	7591	False	NA	NA	False	NA	NA	NA	117856904	117859136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_117857142_117857189
33261	chr9	+	1632	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	204	22	10	-2	multi-exon	FALSE	canonical	3	1280	junction_13	396.993628196225	3	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1199	False	NA	NA	False	NA	NA	NA	108437688	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
33262	chr9	+	3222	26	NIC	ENSMUSG00000032295.16	novel	3820	26	NA	NA	-20	1	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	54.0613873295904	252	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTATAATGGTGCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	57038031	57049489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57038174_57038442_57038543_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
33263	chr7	+	2218	7	NIC	ENSMUSG00000003865.17	novel	480	5	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	83.740505266103	369	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTGGACATAAGCTC	NA	False	NA	NA	False	NA	NA	NA	45097020	45106043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45097078_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
33264	chr8	+	2451	2	ISM	ENSMUSG00000110013.2	ENSMUST00000210977.2	763	4	3	42442	3	-42442	5prime_fragment	FALSE	canonical	3	54	junction_1	0	185	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTAACATTTATATTGATA	NA	False	NA	NA	False	NA	NA	NA	52809648	52813932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_52809842_52811674
33265	chrX	+	2405	1	FSM	ENSMUSG00000051582.3	ENSMUST00000060241.3	873	1	-164	-1368	-164	1368	mono-exon	FALSE	NA	NA	NA	NA	NA	447	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTTTGCATTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	99472454	99474859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99472500_99474900
33267	chr6	-	1470	8	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	309.701106730674	6	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCATTTTCTGACTAA	NA	False	NA	NA	False	NA	NA	NA	33037163	32769159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026338_33036952
33268	chr2	+	1609	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	68	-713	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1536.48492010895	1	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTATACTGTCGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121244431	121268455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244439_121252929_121253009_121255005_121255124_121257075_121257160_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
33270	chr17	-	1012	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	30	-152	22	-102	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGATCCAAAGTTGGCC	3850	False	NA	NA	False	NA	NA	NA	25493254	25480996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
33271	chr6	+	3988	18	FSM	ENSMUSG00000042810.15	ENSMUST00000114572.9	4323	18	-236	571	0	-4	multi-exon	FALSE	canonical	3	26	junction_1	12.6595014032365	85	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAAGTAAAGGCCATTGG	NA	False	NA	NA	False	NA	NA	NA	48372563	48393829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48372822_48379817_48379945_48380311_48380432_48380924_48381075_48382167_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
33272	chr2	-	2196	12	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	-11	-3	intron_retention	FALSE	canonical	0	0	junction_2	106.333484459766	3	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	164699564	164681440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682137_164686494_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
33273	chr14	+	1078	1	Intergenic	novelGene_608	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCAAACAATTATTGTGC	NA	False	NA	NA	False	NA	NA	NA	74191350	74192428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_74191400_74192400
33275	chr14	+	1911	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-20	1272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3111.19460602245	1	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359942	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360019_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376463_63376565_63379182_63379312_63379680
33276	chr13	+	1499	9	Antisense	novelGene_ENSMUSG00000065434.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGAAAGTAGAAAAATAAGA	NA	False	NA	NA	False	NA	NA	NA	58539763	58544073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_58540231_58541009_58541180_58541505_58541590_58541874_58541976_58542124_58542179_58542291_58542600_58542978_58543108_58543387_58543504_58544003
33277	chr10	-	2622	22	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	30	-967	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	466.632851058597	1	88	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGAGCATGGTCACTG	NA	False	NA	NA	False	NA	NA	NA	77845611	77823747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824555_77824732_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826500_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829268_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835669_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
33278	chr4	-	3605	20	FSM	ENSMUSG00000033365.15	ENSMUST00000036156.6	3595	20	-16	6	-16	-6	multi-exon	FALSE	canonical	3	46	junction_19	11.8213853822033	79	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGCCTCTGCCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	117772212	117751688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117751855_117751940_117752123_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969_117769707_117771484
33281	chr6	+	4720	25	NNC	ENSMUSG00000001930.18	novel	4453	8	NA	NA	-4789	-1491	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	5.33593686452737	5	95	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGAAGTGCTCCTCCAC	NA	False	NA	NA	False	NA	NA	NA	125575723	125632099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125575790_125576214_125576354_125577592_125577694_125580286_125580483_125581092_125581309_125585064_125585306_125590997_125591093_125592922_125593084_125601501_125601606_125603197_125603337_125605303_125605439_125608059_125608207_125612517_125612659_125612830_125612945_125614342_125614500_125614929_125615089_125616225_125616362_125618997_125620377_125622599_125622717_125622804_125622946_125623215_125623360_125624707_125624873_125625744_125625789_125626079_125626258_125631994
33282	chr6	+	1875	15	ISM	ENSMUSG00000001930.18	ENSMUST00000147101.2	2686	19	9552	-3	3890	3	3prime_fragment	FALSE	canonical	3	5	junction_6	5.70042962935108	12	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGCTGGTTGTGGACTG	NA	False	NA	NA	False	NA	NA	NA	125635783	125663638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125635879_125639927_125640031_125640466_125640542_125642056_125642162_125643541_125643748_125644433_125644584_125650808_125650920_125654853_125655035_125655726_125655768_125656206_125656324_125659689_125659789_125660479_125660609_125661055_125661096_125662772_125662871_125663313
33283	chr9	-	3708	8	NNC	ENSMUSG00000053110.14	novel	4115	8	NA	NA	182	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	78.3378345790245	143	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAACCAATTTTTATAA	430	False	NA	NA	False	NA	NA	NA	8004209	7932027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_7934731_7936511_7936629_7938408_7938540_7952953_7953136_7962289_7962404_7973796_7973913_8001457_8001709_8004115
33284	chr11	+	2926	9	NIC	ENSMUSG00000034773.17	novel	2547	10	NA	NA	-14	-8	intron_retention	FALSE	canonical	3	289	junction_3	21.8102613464397	29	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCCAGCCTCCGTCCCA	NA	False	NA	NA	False	NA	NA	NA	102139693	102156005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
33285	chr16	-	1573	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	46	326	-21	209	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCCAGATTTAAGTCCT	1000	False	NA	NA	False	NA	NA	NA	11021149	11011159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
33286	chr6	-	1526	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	-28	11	-28	-11	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAGACTGAGGCATTTC	3433	False	NA	NA	False	NA	NA	NA	125263033	125255247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
33287	chr12	-	1964	1	Antisense	novelGene_ENSMUSG00000114075.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACATTCAATTATACCACT	NA	False	NA	NA	False	NA	NA	NA	88052039	88050075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_88050100_88052000
33289	chr1	-	2834	17	NNC	ENSMUSG00000026355.12	novel	2910	17	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1421.56298224876	1	155	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287355	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128259789_128261253_128261389_128262499_128262643_128263466_128263603_128265852_128266015_128267086_128267209_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276825_128277062_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
33290	chr2	+	2422	5	ISM	ENSMUSG00000026999.15	ENSMUST00000124377.2	653	6	18	1166	18	-1166	5prime_fragment	FALSE	canonical	3	149	junction_4	59.0481794808274	7	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGGAATATCTTAAAGCA	NA	False	NA	NA	False	NA	NA	NA	80469193	80485182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197
33291	chr2	+	2351	10	NNC	ENSMUSG00000039515.12	novel	2586	10	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	166.544918495111	14	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGTGTGAGACATCTT	NA	False	NA	NA	False	NA	NA	NA	30306069	30337816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30306150_30316430_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
33292	chr7	-	2638	16	ISM	ENSMUSG00000030872.15	ENSMUST00000124566.2	4251	18	8934	2043	8934	0	internal_fragment	FALSE	canonical	3	796	junction_12	27.4269940022599	466	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTGGTGTTGAGTCCA	NA	False	NA	NA	False	NA	NA	NA	121611456	121587987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371
33293	chr12	+	2531	12	NNC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_7	57.2923487312267	13	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCACCTCTTTGGCTCT	1589	False	NA	NA	False	NA	NA	NA	84363631	84390491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378537_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
33294	chr9	+	5182	27	FSM	ENSMUSG00000044037.16	ENSMUST00000155014.2	5150	27	-29	-3	-29	0	multi-exon	FALSE	canonical	3	12	junction_1	6.10945527743532	59	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGCATGTGTGTTCA	NA	False	NA	NA	False	NA	NA	NA	110709375	110729598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_110709526_110711781_110711892_110713082_110713215_110713934_110714134_110714455_110714522_110714850_110715017_110715473_110715606_110716359_110716480_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723363_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
33295	chr2	-	2439	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	199	724	199	-724	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGCAGTTCTTGAAGTT	9394	False	NA	NA	False	NA	NA	NA	121304349	121291439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
33296	chr12	+	2485	2	Genic_Genomic	ENSMUSG00000021908.11	novel	1878	1	NA	NA	-14	1431	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119224698	119228021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_119224802_119225639
33297	chr8	+	1575	8	NNC	ENSMUSG00000031585.14	novel	1634	8	NA	NA	166	-1	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	465.598188859652	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAATGTTAATGCTTTGT	6801	False	NA	NA	False	NA	NA	NA	34223636	34267191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_34223735_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
33298	chr5	-	1776	4	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	161.287183481998	373	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTGTGCTTCATTTAG	NA	False	NA	NA	False	NA	NA	NA	116560925	116546552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116547550_116553465_116553530_116560171_116560306_116560344
33299	chr13	-	4086	9	FSM	ENSMUSG00000021638.13	ENSMUST00000022140.12	2839	9	8	-1255	8	-1	multi-exon	FALSE	canonical	3	16	junction_8	20.6272726020674	51	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACTAGTCCACTGTTT	NA	False	NA	NA	False	NA	NA	NA	100689218	100633015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100689071
33301	chr7	+	2256	9	NNC	ENSMUSG00000061119.8	novel	2967	9	NA	NA	81	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	37.0403074366291	8	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATTTATTGAAAAAGTAGA	NA	False	NA	NA	False	NA	NA	NA	92523758	92583219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_92523869_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
33302	chr6	+	2217	17	NIC	ENSMUSG00000029802.14	novel	2178	16	NA	NA	0	-62	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	58.2246457696395	211	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	58617530	58669434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_58617613_58627445_58627529_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
33303	chr9	-	383	1	FSM	ENSMUSG00000076138.3	ENSMUST00000102184.3	108	1	-209	-66	-209	66	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGAAATCTGTGTTGGT	9980	False	NA	NA	False	NA	NA	NA	78386126	78385743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78385700_78386100
33304	chr13	-	2142	5	FSM	ENSMUSG00000025871.19	ENSMUST00000153708.2	946	5	-23	-1173	0	0	multi-exon	FALSE	canonical	3	31	junction_4	214.957408572024	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	54713169	54699035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54712994
33306	chr2	+	1272	5	NIC	ENSMUSG00000039205.17	novel	2871	17	NA	NA	50	0	intron_retention	FALSE	canonical	3	84	junction_4	4.43705983732471	1	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTCCCCACCAGCAC	NA	False	NA	NA	False	NA	NA	NA	32265550	32268309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
33307	chr12	-	1404	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	47	21	-8	-21	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	3	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTAGGGTTTGGCCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	111638725	111635815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
33309	chr6	+	3131	18	FSM	ENSMUSG00000029629.18	ENSMUST00000115511.9	3336	18	198	7	198	0	multi-exon	FALSE	canonical	3	71	junction_1	28.335117658721	73	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGTATTTGAAATTCATA	149	False	NA	NA	False	NA	NA	NA	11926112	12081197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
33310	chrX	-	1938	14	Intergenic	novelGene_4092	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACGCATCAGGGAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	150844963	150819095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150819244_150819337_150819469_150820360_150820480_150820583_150820693_150824321_150824462_150829652_150829802_150829890_150830055_150830862_150830959_150841772_150841931_150842352_150842514_150842635_150842774_150843969_150844040_150844286_150844398_150844719
33311	chrX	-	2142	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	31.8576477823179	2	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	NA	False	NA	NA	NA	17117545	16998287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
33312	chr12	+	5725	6	NNC	ENSMUSG00000032705.10	novel	3310	9	NA	NA	0	-10	intron_retention	FALSE	canonical	0	0	junction_5	83.9585612073003	4	257	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCACAAAGCTCAGTGAT	2788	False	NA	NA	False	NA	NA	NA	80509993	80544886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80539673_80543569
33313	chr11	-	1454	5	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2928.53295183783	20	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120239318	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120237360_120237462_120237645_120237736_120237989_120238815_120238924_120239250
33314	chr6	-	1849	6	ISM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	2329	4	18	-4	intron_retention	FALSE	canonical	3	333	junction_3	28.343605980891	281	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACCTGAGCCTGTTGTTG	9293	False	NA	NA	False	NA	NA	NA	88816553	88812899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826
33315	chr15	+	1454	12	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	2	88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	320.859486251155	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGATGGCGAGGATGAGG	NA	False	NA	-92	True	NA	NA	NA	101982300	102003722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997192_101998393_101998530_101999831_101999930_102001420_102001670_102003441_102003485_102003687
33316	chr10	-	1986	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	25	-178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	689.065290960597	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358208	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353775_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
33317	chr5	-	4307	12	ISM	ENSMUSG00000118665.1	ENSMUST00000239513.1	4587	13	12718	9	12718	-9	3prime_fragment	FALSE	canonical	3	163	junction_11	17.7111815081102	69	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTATTCTGTAAAAAAAAGT	9518	False	NA	NA	False	NA	NA	NA	100633714	100589909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100592137_100594382_100594586_100598478_100598617_100598764_100598868_100600130_100600203_100600859_100600952_100601798_100601997_100602293_100602368_100607444_100607662_100623547_100623691_100628056_100628181_100632998
33318	chr11	-	2220	7	NNC	ENSMUSG00000020740.14	novel	3582	16	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	160.051467416648	22	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3533	False	NA	NA	False	NA	NA	NA	115494725	115475080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115477973_115485562_115485608_115485734_115485820_115494653
33319	chr4	-	2103	7	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	7	-26	intron_retention	FALSE	canonical	3	103	junction_2	12.737739202857	19	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATCAACAGAAATATGAAAA	1980	False	NA	NA	False	NA	NA	NA	116664796	116661234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663957_116664664
33320	chr7	+	5199	1	ISM	ENSMUSG00000048078.17	ENSMUST00000107166.8	13172	33	695247	11	109243	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	49	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTTTAAAGGTGTGCAG	4919	False	NA	NA	False	NA	NA	NA	96555090	96560289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_96555100_96560300
33321	chr11	-	2339	2	Intergenic	novelGene_2193	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	29	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATGGAAGAAATAAACACAG	6132	False	NA	NA	False	NA	NA	NA	3197214	3194617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_3196836_3197093
33322	chr11	-	1975	13	NNC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	47	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.4004185357496	2	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAATGGCACCAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	106084315	106054152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106054784_106054833_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061777_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106075387_106075446_106077950_106078007_106084291
33324	chr2	+	676	1	ISM	ENSMUSG00000033411.17	ENSMUST00000036647.13	5053	13	55779	1187	32968	67	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTATTTAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	121842260	121842936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121842300_121842900
33328	chr2	-	2217	7	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5	1722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	456.595280308503	1	111	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTGGAAGGTATGTTT	2343	False	NA	NA	False	NA	NA	NA	177269997	177259274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177259380_177260173_177261604_177261692_177262087_177263226_177263288_177263479_177263577_177266761_177266817_177269922
33329	chr9	-	5211	3	NIC	ENSMUSG00000032436.18	novel	993	5	NA	NA	0	-12	intron_retention	FALSE	canonical	3	1122	junction_1	161	17	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCAATTGCAGCAGGTTT	NA	False	NA	NA	False	NA	NA	NA	114610917	114585918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_114586360_114587872_114592461_114610735
33331	chr12	+	2508	8	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	6	-807	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	188.444329461309	1	70	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTGGGATGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	59113734	59119977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115762_59116935_59117084_59117164_59117304_59118211
33332	chr10	+	2356	12	NNC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	423.038204319716	1	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21870610	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871697_21871798_21871924_21872009_21872121_21872254_21872457_21872559_21872901_21873002_21873240_21873337_21873796_21873953_21874058_21874146_21874558
33335	chr5	-	2920	6	NNC	ENSMUSG00000029634.16	novel	909	6	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.1650282212875	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAAAGACTGTGTGCAAA	2308	False	NA	NA	False	NA	NA	NA	146158238	146146009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_146147397_146147793_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
33336	chr11	+	1915	8	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-14	1	intron_retention	FALSE	canonical	3	485	junction_4	20.1210621702022	24	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGGTTAAGATCAT	9176	False	NA	NA	False	NA	NA	NA	70538098	70542239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
33338	chr9	-	3565	12	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	4444	-5	intron_retention	FALSE	canonical	1	8	junction_5	64.8239829101127	9	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAACCTGTGTGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	21724767	21711480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714420_21715217_21715921_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680
33339	chr3	+	2329	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	35	0	35	0	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	474	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATGGTATCTGATTCT	NA	False	NA	NA	False	NA	NA	NA	90155513	90160919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
33341	chr5	-	759	1	ISM	ENSMUSG00000066640.12	ENSMUST00000110766.8	7857	5	27708	9	4780	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	17	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCCAGGCAGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	142853468	142852709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142852700_142853500
33342	chr17	-	1826	4	NIC	ENSMUSG00000024150.13	novel	2017	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	142.964642093382	480	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	NA	False	NA	NA	NA	87573323	87562085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_87563486_87564574_87564735_87565355_87565518_87573219
33343	chr1	-	2104	9	NIC	ENSMUSG00000016481.16	novel	1501	9	NA	NA	1	-469	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	78.6018447620665	116	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAGCTCAAGCAAGCATC	NA	False	NA	NA	False	NA	NA	NA	194813868	194780158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
33344	chr5	-	3102	5	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTAGCGGCGCGCGACA	NA	False	NA	NA	False	NA	NA	NA	75781609	75735624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75735776_75767682_75770210_75771464_75771611_75775978_75776151_75781503
33345	chr15	+	776	1	NIC	ENSMUSG00000022551.9	novel	1520	7	NA	NA	1002	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAAAGCACCCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	76229677	76230453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76229700_76230500
33346	chr15	+	1762	1	Antisense	novelGene_ENSMUSG00000022552.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCATATAAAGCCAAGC	NA	False	NA	NA	False	NA	NA	NA	76231202	76232964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_76231200_76233000
33348	chr11	-	3680	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	78	0	78	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	1	206	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88755334	88721617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
33349	chr1	+	3693	3	FSM	ENSMUSG00000097814.6	ENSMUST00000202118.2	410	3	49	-3332	49	-1	multi-exon	FALSE	canonical	3	11	junction_1	4.5	45	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAATCATCTCTATTATT	NA	False	NA	NA	False	NA	NA	NA	96800006	96808958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_96800116_96800209_96800394_96805558
33350	chr8	-	2881	4	NIC	ENSMUSG00000031843.3	novel	1068	5	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	669	junction_1	54.7986212316413	94	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACACTTTGAAGTAATTTT	NA	False	NA	NA	False	NA	NA	NA	118528693	118518385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_118519058_118519417_118521411_118525782_118525896_118528590
33352	chr12	+	2650	8	NIC	ENSMUSG00000060121.16	novel	1946	10	NA	NA	-2	53	intron_retention	FALSE	canonical	1	279	junction_2	182.197246781322	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAGTGTCTGAAATGTC	NA	False	NA	NA	False	NA	NA	NA	59060176	59074726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59068523_59071788_59071900_59073640_59073700_59074522
33353	chr9	+	1310	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	2	167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6159.02867722773	2	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCATAAACTATTAAAAATT	NA	False	NA	NA	False	NA	NA	NA	64080658	64085719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082102_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
33354	chr7	-	2814	20	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	191	506	-16	-506	3prime_fragment	FALSE	canonical	3	1924	junction_14	261.383841247645	1	155	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTGCTCCTAACTCAC	NA	False	NA	NA	False	NA	NA	NA	126165392	126146132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
33355	chr9	+	1966	15	ISM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	4949	422	-108	-29	3prime_fragment	FALSE	canonical	3	203	junction_11	172.434430010544	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATAAAACTATACTTCCA	NA	False	NA	NA	False	NA	NA	NA	86909015	86959405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
33356	chr10	+	1875	15	NNC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	4	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	235.861858566684	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAGTACAGAGTCAGAAC	9220	False	NA	NA	False	NA	NA	NA	127102259	127117804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127116036_127116147_127117269
33357	chr19	+	2594	5	NNC	ENSMUSG00000024683.7	novel	1162	4	NA	NA	18	1518	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	142.494736744906	8	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTGTTGTGAGTTTCC	200	False	NA	NA	False	NA	NA	NA	11747793	11753842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511_11751692_11751738
33358	chrX	+	3529	16	NIC	ENSMUSG00000035967.16	novel	3766	17	NA	NA	346	-14	intron_retention	FALSE	canonical	3	20	junction_9	18.5539453725856	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTTTTTCAAAACTACAT	NA	False	NA	NA	False	NA	NA	NA	55500590	55553184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
33359	chr11	-	1932	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1000.5786342441	1	68	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5271	False	NA	NA	False	NA	NA	NA	88846221	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821176_88824328_88824388_88825403_88825498_88826648_88826778_88827839_88827907_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
33360	chr8	+	1844	12	NNC	ENSMUSG00000003808.19	novel	1826	13	NA	NA	-2	-2	intron_retention	FALSE	canonical	1	5	junction_5	191.863157157335	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTCTGTTGTCATTCATT	NA	False	NA	NA	False	NA	NA	NA	85583621	85595883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590921_85590989_85591065_85591182_85594005_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
33361	chr2	+	1176	13	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	95	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1092.78356032758	2	20	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCTGCAGAAAGCATAAA	NA	False	NA	NA	False	NA	NA	NA	31360313	31410631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371127_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383_31410463_31410551
33362	chr15	-	1833	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	366	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	2	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056427	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038473_83038694_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
33364	chr1	+	2569	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-21	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	735.825915402399	2	119	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACATGTTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	4928015	4968126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937760_4948247_4948356_4956966_4957055_4959682_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
33366	chr15	-	2427	11	FSM	ENSMUSG00000036966.16	ENSMUST00000154032.2	2456	11	27	2	-15	-2	multi-exon	FALSE	canonical	3	150	junction_5	18.3913022921162	323	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGACGGAAGGGGAATCC	NA	False	NA	NA	False	NA	NA	NA	102044642	102024964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102038849_102039100_102039226_102040302_102040379_102041850_102041998_102044570
33367	chr3	+	2069	6	ISM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	1069	10	-560	-10	3prime_fragment	FALSE	canonical	3	1082	junction_5	120.346167367308	2	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATCAATTGTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	122069105	122078910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
33369	chr11	+	3418	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	68	0	-17	0	multi-exon	FALSE	canonical	3	173	junction_11	15.0937896237857	386	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGCAGCTGAGTCACTT	NA	False	NA	NA	False	NA	NA	NA	114566324	114611803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
33370	chr11	+	2198	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	-19	491	3	0	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	1192	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	96679965	96698975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
33371	chr14	-	2061	8	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	6313	258	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	110.363961879015	6	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAACCTTTGCCATTCTC	NA	False	NA	NA	False	NA	NA	NA	21095832	21085823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21086772_21087180_21087326_21088045_21088221_21089209_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555
33372	chr9	+	2449	8	NIC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	2	-1	intron_retention	FALSE	canonical	3	1650	junction_7	110.992737398003	99	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTATGGTGAAAGGATACT	NA	False	NA	NA	False	NA	NA	NA	54858075	54865313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54863672_54864094_54864219_54864918
33373	chr17	+	3318	25	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	898	9	175	-2	3prime_fragment	FALSE	canonical	3	188	junction_7	72.7634938802877	216	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAATAAACTGTCTGGTGA	8070	False	NA	NA	False	NA	NA	NA	35118844	35133018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35118893_35121989_35122072_35122157_35122196_35122298_35122455_35124104_35124243_35124317_35124433_35124585_35124688_35124885_35125035_35125126_35125271_35125352_35125589_35125670_35125854_35125958_35126042_35126306_35126414_35126497_35126621_35126718_35126821_35127149_35127255_35127379_35127535_35127613_35127782_35129666_35129812_35129953_35130032_35130338_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
33374	chr4	+	2263	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.379707458184	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTGTGTTCGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	124923829	124949173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923962_124928052_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941405_124942157_124942299_124942472_124942587_124946196_124946649_124947247_124947319_124947925_124948021_124948976
33375	chr14	+	2072	15	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	114.179504218899	24	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	2	True	NA	NA	False	NA	NA	NA	25842606	25887228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25869287_25869351_25870492_25870533_25873157_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
33376	chr5	-	2393	9	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	0	-3	intron_retention	FALSE	canonical	3	1073	junction_8	124.006993250381	10	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGATGCTAAGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	24650184	24646043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24648142_24648274_24648455_24648892_24649304_24650063
33377	chr14	+	1594	3	FSM	ENSMUSG00000022010.20	ENSMUST00000142683.8	797	3	-36	-761	-36	-3	multi-exon	FALSE	canonical	3	75	junction_1	1130	41	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	3067	False	NA	NA	False	NA	NA	NA	76725162	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76725365_76742688_76742738_76743856
33378	chr5	-	551	5	Antisense	novelGene_ENSMUSG00000029614.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCTTGTCCCCACCAACT	NA	False	NA	NA	False	NA	NA	NA	121347030	121343886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121343918_121344728_121344872_121345207_121345217_121346456_121346637_121346842
33379	chr19	+	1676	11	NNC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_10	200.487805115423	6	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGGTTTGACCTACTG	3589	False	NA	NA	False	NA	NA	NA	4198631	4204028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203298_4203595
33380	chr2	+	1890	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	67	-712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1555.16552352332	1	84	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATACTGTCGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121244430	121268456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260073_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265403_121266406_121266482_121266837_121266896_121268066
33381	chr4	-	2804	14	NIC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-48	-1	intron_retention	FALSE	canonical	2	5	junction_2	38.5363887051949	1	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAGTTGTATGTGTGT	-22	True	NA	NA	False	NA	NA	NA	43010270	43002343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43003093_43003226_43003313_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43009280_43009706_43009801_43010001_43010173_43010255
33382	chr18	+	2212	9	NNC	ENSMUSG00000037236.17	novel	2638	13	NA	NA	-29	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	543.978113070737	1	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35695322	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695330_35714659_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717940_35720692_35720907_35721384_35721507_35723432
33383	chr11	+	1512	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-1	-27	multi-exon	FALSE	canonical	0	0	junction_1	0	3	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GTCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653618	120655218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654456_120654543
33384	chr17	+	3073	12	FSM	ENSMUSG00000053436.16	ENSMUST00000062694.16	3548	12	471	4	73	-3	multi-exon	FALSE	canonical	3	310	junction_9	36.7805643969117	197	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTGGTTTCTCAGGTT	5548	False	NA	NA	False	NA	NA	NA	28910786	28967375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28910830_28932747_28932878_28934356_28934416_28943717_28943830_28944466_28944497_28944770_28944819_28947330_28947446_28947877_28947950_28955984_28956065_28960761_28960841_28963956_28964131_28965244
33385	chr17	+	5158	5	FSM	ENSMUSG00000023967.10	ENSMUST00000123646.2	621	5	10	-4547	10	1502	multi-exon	FALSE	canonical	3	1063	junction_2	42.9905512874632	35	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCACCGCCAAGGAATCA	NA	False	NA	NA	False	NA	NA	NA	46421931	46441338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568
33386	chr17	+	1787	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1039.19561231808	2	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135403	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139175_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
33387	chr7	+	3609	16	FSM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	67	2	34	-2	multi-exon	FALSE	canonical	3	89	junction_1	61.1041369757855	1	106	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGGCTGGACATAAGC	1094	False	NA	NA	False	NA	NA	NA	45084334	45106041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
33388	chr14	+	1644	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	12	1259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2944.0394766375	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGCTTGACATTGGC	NA	False	NA	NA	False	NA	NA	NA	63359922	63380571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373049_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63379928_63380220
33389	chr4	-	467	4	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	31	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	827.99127746345	13	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAATTCTTTTCAGATGT	NA	False	NA	NA	False	NA	NA	NA	137084979	137047055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137047272_137059717_137059791_137063285_137063441_137084956
33390	chr8	+	2692	2	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	31	56	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGTTCAGCTCCTTGGAC	NA	False	NA	NA	False	NA	NA	NA	43757075	43759992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43758038_43758262
33392	chr14	-	1850	15	NNC	ENSMUSG00000021814.18	novel	2904	14	NA	NA	-8	361	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	413.41245402486	8	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8192	False	NA	NA	False	NA	NA	NA	20529987	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20522073_20522138_20523342_20523398_20529351_20529409_20529962
33394	chr6	-	1276	7	NNC	ENSMUSG00000023456.17	novel	1552	6	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	699.931048191336	121	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	NA	False	NA	NA	NA	124791121	124787677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789622_124789769_124789877_124790970
33395	chr2	+	1835	8	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	17934	1017	-2124	972	3prime_fragment	FALSE	canonical	3	2736	junction_2	181.124942782487	4	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGCCCCGACTCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	162914540	162925591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
33398	chr7	-	2864	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	28	7	-2	-5	multi-exon	TRUE	canonical	3	622	junction_9	35.4843036069349	310	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGTGTGTGTGTATGT	4624	False	NA	NA	False	NA	NA	NA	28297582	28258250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
33399	chr5	+	2911	8	NIC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	4657	junction_7	274.888400361058	32	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTCTCTGTAGATTTCC	656	False	NA	NA	False	NA	NA	NA	135807536	135819242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135807656_135812158_135812328_135813037_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
33400	chr17	+	3045	13	NNC	ENSMUSG00000002833.12	novel	3354	12	NA	NA	41	1	intron_retention	FALSE	canonical	0	0	junction_6	303.664288318531	4	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAGAAACAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	56388464	56407593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56404529_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
33401	chr8	+	2420	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	4	-3	4	-3	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	1	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTCTGTGTTTCTGTAA	2124	False	NA	NA	False	NA	NA	NA	13388771	13428445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
33402	chr7	-	1538	11	Antisense	novelGene_ENSMUSG00000083396.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCCTGGCCCGGCCCGG	NA	False	NA	NA	False	NA	NA	NA	140478556	140462444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_140462480_140463412_140463511_140466412_140466479_140466713_140466759_140466929_140467017_140469215_140469388_140470242_140470325_140470405_140470530_140474386_140474455_140477327_140477636_140478103
33403	chr17	+	2402	4	FSM	ENSMUSG00000003198.11	ENSMUST00000224294.2	705	4	-44	-1653	-44	4	multi-exon	FALSE	canonical	3	33	junction_1	7.87400787401181	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATTTATGTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	56199423	56205932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56199861_56202820_56202948_56203140_56203202_56204155
33405	chr7	+	3922	3	NNC	ENSMUSG00000054715.12	novel	2620	3	NA	NA	12	-142	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0.5	6	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCCTTCCATGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	12631779	12642868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12631871_12637527_12638013_12639522
33406	chr10	+	1595	7	NNC	ENSMUSG00000060904.15	novel	2080	6	NA	NA	309	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	453.194096264381	23	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACGAGATGTCTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	88567238	88579952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884_88579241_88579412
33407	chr14	-	3107	22	Fusion	ENSMUSG00000023156.5_ENSMUSG00000033885.16	novel	2840	19	NA	NA	-35	-5	multi-exon	FALSE	canonical	2	9	junction_17	54.2896406265973	69	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACGAAAGTATGTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	14389441	14304666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_14305839_14314427_14314491_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
33408	chr16	-	2065	1	Antisense	novelGene_ENSMUSG00000022744.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACAGCACCGTCTGAGT	1356	False	NA	NA	False	NA	NA	NA	58554394	58552329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_58552300_58554400
33409	chr17	+	2738	15	Antisense	novelGene_ENSMUSG00000024206.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCAGCTTGGACCAGCAC	2491	False	NA	NA	False	NA	NA	NA	57083195	57112424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_57084075_57084431_57084477_57084840_57084993_57086879_57087088_57087753_57087903_57089248_57089347_57090604_57090764_57091301_57091412_57091646_57091767_57092296_57092417_57093612_57093728_57094577_57094761_57110477_57110742_57111327_57111395_57112355
33410	chr11	-	2785	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	-894	0	37	0	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	465	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	69471044	69452584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
33411	chr14	-	2680	7	NIC	ENSMUSG00000034194.19	novel	1726	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	88	junction_6	45.1651291251214	29	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTGCGTCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	69945006	69934755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
33412	chr7	-	2443	3	NIC	ENSMUSG00000074129.15	novel	992	6	NA	NA	4	0	intron_retention	FALSE	canonical	3	16413	junction_1	991.5	2	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778155	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775962_44776132_44776219_44776414
33414	chr11	+	2291	12	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	1	-23	intron_retention	FALSE	non_canonical	0	0	junction_1	343.294033429697	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAATAAAAAGTTCTCCA	NA	False	NA	NA	False	NA	NA	NA	98573391	98586782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98573616_98573699_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
33415	chr12	+	3562	2	NIC	ENSMUSG00000020668.11	novel	6791	8	NA	NA	2457	20164	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGAAGATCTTCCCGGC	2826	False	NA	NA	False	NA	NA	NA	3454520	3476658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_3457925_3476500
33416	chr19	-	2436	12	ISM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	-43	26024	-43	619	5prime_fragment	FALSE	canonical	3	1256	junction_11	110.265644679992	12	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTAATTTTAGGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	27407268	27392121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
33417	chr7	+	4658	7	FSM	ENSMUSG00000053198.15	ENSMUST00000098644.9	4841	7	10	173	10	0	multi-exon	FALSE	canonical	2	4	junction_1	15.3124858276578	63	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATGTGTCTTGGTTCTCG	1771	False	NA	NA	False	NA	NA	NA	27198758	27219466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27198791_27203957_27204002_27204089_27204189_27204304_27204432_27207371_27207529_27214675_27214873_27215464
33418	chr8	-	2357	7	NNC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	-26	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	204.817805215595	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCACTGCTGATCTG	NA	False	NA	NA	False	NA	NA	NA	11685062	11661596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_11662948_11665749_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
33419	chr4	-	1673	4	ISM	ENSMUSG00000028809.17	ENSMUST00000084846.12	3740	18	28123	0	-272	0	3prime_fragment	FALSE	canonical	3	1060	junction_3	116.610462652371	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACATTGCCACTCACAT	NA	False	NA	NA	False	NA	NA	NA	135052432	135047801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129
33420	chr2	+	1811	1	FSM	ENSMUSG00000081272.2	ENSMUST00000119733.2	1308	1	-32	-471	-32	471	mono-exon	FALSE	NA	NA	NA	NA	NA	4	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAGTATGTGACAATACA	NA	False	NA	NA	False	NA	NA	NA	49198134	49199945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_49198100_49199900
33421	chr4	+	1997	6	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	334	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	225.478690789174	5	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGATGATCAGATTATAC	5382	False	NA	NA	False	NA	NA	NA	89055692	89099314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89090572_89090622_89095039_89095163_89097704
33422	chr15	+	2878	9	Intergenic	novelGene_3314	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCGCCGGCTACCGATCTA	1390	False	NA	NA	False	NA	NA	NA	76339061	76361427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_76339097_76339167_76339332_76339407_76339618_76339692_76339798_76339881_76340003_76340074_76340229_76350973_76351055_76358949_76360079_76360548
33423	chr3	-	4155	11	NIC	ENSMUSG00000033439.13	novel	1723	11	NA	NA	-2	4	intron_retention	FALSE	canonical	2	4	junction_7	52.6289844097338	4	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGTGAGGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	116388511	116374737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_116375260_116376142_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116384053_116384206_116385841_116385909_116386112_116386160_116388287
33424	chr10	+	2493	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	39.9503024602651	207	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTATACTGGTTT	5401	False	NA	NA	False	NA	NA	NA	78410335	78420333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
33425	chr7	+	2427	8	NNC	ENSMUSG00000042606.10	novel	2766	7	NA	NA	-24	205	intron_retention	TRUE	canonical	0	0	junction_4	87.8049787068722	25	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAATTGGTCCCAAACCG	1452	False	NA	NA	False	NA	NA	NA	126461119	126464295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126462920_126463028_126463423_126463491_126463658_126463734_126463834_126463905
33426	chr5	+	3371	5	NNC	ENSMUSG00000056014.16	novel	3038	4	NA	NA	-3	373	intron_retention	FALSE	non_canonical	0	0	junction_4	11.7686022959398	61	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTTTAGTTTGTTTA	1804	False	NA	NA	False	NA	NA	NA	138621117	138647471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375_138646892_138646969
33427	chr3	+	2031	17	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	0	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	324.485337688778	1	64	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAACATACTTTGACACC	4849	False	NA	NA	False	NA	NA	NA	34074246	34123394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103309_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
33428	chr1	-	2486	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	23	640	-3	-640	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTCATTAAGACAATGCT	NA	False	NA	NA	False	NA	NA	NA	134289694	134274474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
33429	chr4	+	4345	21	NIC	ENSMUSG00000028830.15	novel	4073	24	NA	NA	26	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	14.5995719115322	74	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTATGAGGTTGTG	NA	False	NA	NA	False	NA	NA	NA	126647373	126748129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126647561_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
33430	chr11	-	3366	5	NIC	ENSMUSG00000018659.13	novel	1994	7	NA	NA	-10	-5	intron_retention	FALSE	canonical	3	181	junction_3	11.0764389584379	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAATGTTTAACTTGAT	NA	False	NA	NA	False	NA	NA	NA	96834822	96828655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235
33431	chr11	-	2948	2	FSM	ENSMUSG00000041598.8	ENSMUST00000053536.5	3008	2	60	0	60	0	multi-exon	FALSE	canonical	3	115	junction_1	0	189	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTCTGACTCTTC	7423	False	NA	NA	False	NA	NA	NA	113642647	113617677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_113620492_113642513
33432	chr5	-	2672	6	NNC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-14	-12	intron_retention	FALSE	non_canonical	0	0	junction_3	428.367319014885	1	98	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTATGTGATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100186768	100182597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100184511_100184720_100184836_100184943_100185067_100185426_100185589_100185671_100185841_100186578
33434	chr19	+	1977	10	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	-8	intron_retention	FALSE	canonical	3	402	junction_1	79.8759841223016	1511	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAAGCCAGGTTTGACCT	3575	False	NA	NA	False	NA	NA	NA	4198617	4204024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225
33435	chr3	-	2926	16	NNC	ENSMUSG00000028078.15	novel	3486	16	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	82.1544886174821	1	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCAGAAAATCCATGGGG	NA	False	NA	NA	False	NA	NA	NA	86827652	86693470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86694720_86699375_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813410_86827433
33436	chr13	+	2587	4	NNC	ENSMUSG00000021488.9	novel	1149	6	NA	NA	817	-481	intron_retention	FALSE	non_canonical	0	0	junction_3	123.551158994519	4	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGAAAGGTGGCTTTATT	NA	False	NA	NA	False	NA	NA	NA	55361015	55388178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55361964_55381707_55381844_55386502_55386933_55387105
33438	chr4	-	1773	6	NNC	ENSMUSG00000028857.17	novel	1484	6	NA	NA	942	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	309.022588171156	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGGTGTCTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	133003987	132993359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998650_133003723
33439	chr2	+	1280	7	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-82	-6	intron_retention	FALSE	canonical	0	0	junction_1	1904.02620926172	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800693	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26800721_26800830_26801139_26801433_26801584_26802030_26802172_26802377_26802814_26802999_26803070_26803176
33440	chr2	+	3084	18	NNC	ENSMUSG00000026843.16	novel	3648	18	NA	NA	10	0	intron_retention	FALSE	non_canonical	0	0	junction_9	306.600345117708	2	137	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	644	False	NA	NA	False	NA	NA	NA	31462813	31507532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482477_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493349_31494639_31494729_31495254_31495350_31498096_31498239_31501595_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31505509_31505699_31506199
33441	chr15	+	1297	4	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	630.303630535845	124	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141455_80141569
33442	chr4	+	2060	7	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.372677996249965	1	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCTGCCTACCTCACCG	NA	False	NA	NA	False	NA	NA	NA	135047813	135056750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054537_135056315_135056358_135056686
33444	chr14	-	3627	20	FSM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	-21	-2	0	2	multi-exon	FALSE	canonical	2	6	junction_6	9.18507762457831	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCCATTGTGTTATTGC	NA	False	NA	NA	False	NA	NA	NA	20844119	20784948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
33445	chrX	+	1063	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	199	-52	199	52	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTACTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13069008	13070071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13069000_13070100
33446	chr14	+	3434	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112625.9	3434	3	11	-11	11	11	multi-exon	FALSE	canonical	3	8	junction_1	6.5	69	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTGTAAGATAAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	6226442	6231087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_6226474_6226964_6227973_6228692
33447	chr10	-	1583	9	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	707.237749540422	2	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725665	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93715450_93715505_93715934_93716001_93722855_93722964_93725399
33448	chr7	-	1618	7	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	-6	intron_retention	FALSE	canonical	3	19253	junction_3	614.81580349095	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398354	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395473_126395766_126395928_126396025_126396081_126396508_126396949_126398216
33449	chr8	+	2834	23	NIC	ENSMUSG00000031930.12	novel	4314	24	NA	NA	4	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_15	146.563048797189	1	77	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTATTACCTGTTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	108163000	108283840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
33451	chr11	+	1333	10	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	1158.56553494631	169	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	NA	False	NA	NA	NA	9068534	9086168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068661_9069373_9069450_9069892_9070001_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
33452	chr6	-	2298	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	613.200347901619	1	66	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8927	False	NA	NA	False	NA	NA	NA	47790327	47773074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47776119_47776267_47777925_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
33453	chr10	-	2390	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	3	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	116417405	116321069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
33454	chr4	+	2403	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-8	400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	609.139283470264	604	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCGTTTATTTCGAGAT	4698	False	NA	NA	False	NA	NA	NA	135583434	135596093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586234_135589075_135589189_135590350_135590514_135590833_135590888_135594436
33455	chr9	+	1699	8	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-41	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6044.78384009465	20	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTGTGTTTTGTTTT	1828	False	NA	NA	False	NA	NA	NA	59563814	59586653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572577_59577829_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
33456	chr2	-	2019	7	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	28	-2108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	218.256538657303	621	85	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAGAATTGTAGTAA	NA	False	NA	NA	False	NA	NA	NA	121337118	121324499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121325329_121325410_121325507_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336992
33457	chr8	-	1454	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	48	79	42	-79	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	1301	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTAGCATTCTTAGGGCT	NA	False	NA	NA	False	NA	NA	NA	108315048	108307091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
33461	chr11	-	1687	2	ISM	ENSMUSG00000000751.14	ENSMUST00000135770.8	2040	17	38881	-948	38881	-7	3prime_fragment	FALSE	canonical	3	1486	junction_1	0	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCCTACTTTCTTTGAC	1181	False	NA	NA	False	NA	NA	NA	75194133	75191182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75192230_75193493
33462	chr18	+	1755	2	NNC	ENSMUSG00000057561.11	novel	2651	2	NA	NA	10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTACAAAAACTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	46730831	46742234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730897_46740544
33464	chr10	-	1479	4	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	2	2	intron_retention	FALSE	canonical	3	2594	junction_3	461.374757292449	186	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663098	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23662779_23662891_23662943_23663053
33465	chr2	-	1072	5	FSM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	29	-303	29	303	multi-exon	FALSE	canonical	3	1430	junction_1	23.7421039505769	6832	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAAAGATCCTGCCTGG	NA	False	NA	NA	False	NA	NA	NA	118310163	118306027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
33466	chr9	+	2305	14	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	50	3	intron_retention	FALSE	canonical	3	256	junction_6	38.6426505026483	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCTCTGGCTGTATAAAT	NA	False	NA	NA	False	NA	NA	NA	107828236	107848727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107828372_107833063_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
33467	chr14	-	3304	26	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	180	131	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	318.941624752869	1	136	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTTTGCCATTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	52434693	52399044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411460_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421471_52434541
33468	chr2	+	2206	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	14	18	0	0	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	462	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTTCTAAGTGGCG	NA	False	NA	NA	False	NA	NA	NA	70491933	70522069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
33469	chr13	-	2336	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	38	-145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	192.363588030583	1	88	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGATGACTTACATTTTG	NA	False	NA	NA	False	NA	NA	NA	9046048	9022660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035336_9035735_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
33471	chr17	+	1427	6	NNC	ENSMUSG00000046711.17	novel	2001	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2255.93217983165	27	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	27775626	27782643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27781837_27782044
33472	chr10	-	1904	1	FSM	ENSMUSG00000070063.3	ENSMUST00000093556.3	129	1	-1623	-152	-1623	152	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTTGTATTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	23662996	23661092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_23661100_23663000
33473	chrM	+	957	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	1447	-580	1447	580	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	53	False	NA	-67	True	NA	NA	NA	13188	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_13200_14100
33476	chr11	-	3153	10	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	33	-4	intron_retention	FALSE	canonical	3	202	junction_5	33.7664454674485	5	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCATGTTGCAGCTTC	8336	False	NA	NA	False	NA	NA	NA	82799204	82791601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
33478	chr6	-	4401	7	ISM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	38	12426	-2	11815	5prime_fragment	FALSE	canonical	2	55	junction_4	9.69106117340442	15	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTTTCCTTTCCACCTT	5814	False	NA	NA	False	NA	NA	NA	34887773	34869786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
33479	chr2	-	1493	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	100	949	-4	-941	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	2	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTTGATTCCTGGGCT	3732	False	NA	NA	False	NA	NA	NA	154734755	154714278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
33480	chr17	+	1728	10	NNC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-912	1747	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGGGTTTGCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	45896133	45901050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45896708_45897018_45897232_45898153_45898240_45898487_45898597_45899214_45899312_45899926_45900000_45900132_45900229_45900336_45900475_45900606_45900746_45900847
33481	chr11	-	1762	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	58	132	1	-131	multi-exon	FALSE	canonical	3	5636	junction_4	454.292680988809	1	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTATGTAAGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	120239310	120236647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
33483	chr2	+	1586	13	Fusion	ENSMUSG00000002102.16_ENSMUSG00000002104.12	novel	1636	12	NA	NA	2066	4	multi-exon	FALSE	canonical	0	0	junction_1	549.302505961474	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTCAGCCTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	90875195	90889783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_90875385_90884598_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
33484	chr11	+	2568	4	NIC	ENSMUSG00000018599.6	novel	2522	4	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	59.6713219785406	39	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATATGTGTAATTCTTG	NA	False	NA	NA	False	NA	NA	NA	60619221	60623774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_60619394_60621108_60621262_60621408_60621619_60621741
33485	chr4	-	1492	10	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.996885926193	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATAGCCCCATGCTGGT	2492	False	NA	NA	False	NA	NA	NA	129229163	129203314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129212279_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
33486	chr10	+	2064	8	NIC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	0	81	intron_retention	FALSE	canonical	3	1673	junction_5	37.7272704919864	38	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGCGCCTTGGTTGTTCT	2289	False	NA	NA	False	NA	NA	NA	79795988	79803526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802304_79802393_79803223_79803304
33488	chr11	+	1573	5	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	18	-126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4382.02786960558	1	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGAGGATTGCTTGTAAT	3053	False	NA	NA	False	NA	NA	NA	75623756	75656545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642771_75647738_75647850_75650117_75650255_75655445
33489	chr4	-	1313	10	ISM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	65	1956	65	-1956	5prime_fragment	FALSE	canonical	3	1320	junction_9	103.914969988228	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCCACGTTTTCACATTC	NA	False	NA	NA	False	NA	NA	NA	137523630	137470999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
33490	chr4	-	1655	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	-18	3	-18	-3	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	1758	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGTTTCCTTATGTGTC	3729	False	NA	NA	False	NA	NA	NA	41741377	41738495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
33491	chr9	+	1282	9	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.514274957871	73	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGACTCTGAGTGGCTTT	636	False	NA	NA	False	NA	NA	NA	45281750	45307451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306619_45306851
33492	chr15	-	1350	12	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	801.702537527284	23	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTTTATTTTGCTTGA	2674	False	NA	NA	False	NA	NA	NA	43146104	43113456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124577_43126655_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
33495	chr11	-	1193	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7899.66008586586	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCCAACTCAGTTGTTT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807895_69808048_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
33496	chr1	+	1595	3	ISM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	6079	0	-1126	0	3prime_fragment	FALSE	canonical	3	409	junction_1	5	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	NA	False	NA	NA	NA	171960400	171962850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_171960874_171961566_171961612_171961773
33497	chr15	+	3869	17	NNC	ENSMUSG00000022463.9	novel	4040	21	NA	NA	68	0	intron_retention	FALSE	non_canonical	0	0	junction_1	292.054194189623	1	142	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTGTCCTGTTCCTTCCC	2311	False	NA	NA	False	NA	NA	NA	82031519	82088876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031692_82053940_82054333_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076408_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087532_82087941
33498	chr4	+	4349	22	FSM	ENSMUSG00000028681.12	ENSMUST00000030443.12	4382	22	29	4	8	-4	multi-exon	FALSE	canonical	3	5	junction_3	13.5888776715328	93	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATCTCAGATGGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	116953300	116972576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116953625_116954043_116954237_116961929_116962120_116962226_116962297_116962430_116962523_116963131_116963328_116965095_116965218_116965351_116965500_116965579_116965712_116965800_116965957_116966052_116966146_116966489_116966616_116966708_116966828_116966933_116967283_116967391_116967705_116967795_116967939_116968023_116968205_116968321_116968603_116968711_116968850_116971208_116971352_116971439_116971540_116971836
33499	chr9	-	4796	11	NIC	ENSMUSG00000090626.10	novel	2794	12	NA	NA	-3	-35	intron_retention	FALSE	canonical	3	143	junction_10	32.0663374896479	87	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATTACAAATTAAAAAAAT	7873	False	NA	NA	False	NA	NA	NA	72399246	72367036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
33500	chr19	-	1978	8	NNC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	2	-4	intron_retention	TRUE	non_canonical	0	0	junction_1	89.4773942492329	406	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCCTGTGTTTTTCTTC	9997	False	NA	NA	False	NA	NA	NA	6117836	6112855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6113104_6113159_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6117053_6117152_6117350_6117698
33502	chr3	-	1691	1	Intergenic	novelGene_3081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	11080253	11078562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_11078600_11080300
33503	chr11	-	1751	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	22	1014	7	51	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCACCCTCAAAAAGGCCA	9894	False	NA	NA	False	NA	NA	NA	86574640	86475704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
33504	chr18	-	3054	19	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	-10	-1396	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	385.755823748075	1	119	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGACCCCAGATGCCCA	NA	False	NA	NA	False	NA	NA	NA	60982011	60952497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60952641_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962081_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
33505	chr14	-	1623	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	1157	-118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1383.56504522736	2	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATCACTCCTGAGACTTA	NA	False	NA	NA	False	NA	NA	NA	63745048	63729913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731562_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63744906
33506	chr1	-	2090	4	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	260	6	0	5	intron_retention	FALSE	canonical	3	5309	junction_1	803.38824155365	3	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174626	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915
33507	chr18	+	2810	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	31	24	10	-24	multi-exon	FALSE	canonical	3	1498	junction_1	106	1	138	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTAAAATGACTTAGAGA	NA	False	NA	NA	False	NA	NA	NA	46730801	46743254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
33508	chr13	+	3720	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74234	-23	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	20.6097064510876	5	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATAAAGTCAAAGTTCTA	NA	False	NA	NA	False	NA	NA	NA	21120568	21208399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21181557_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
33509	chr17	+	1560	2	NNC	ENSMUSG00000024014.9	novel	867	2	NA	NA	823	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCTTTGAGTTTTCCAT	NA	False	NA	NA	False	NA	NA	NA	29713203	29715081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29713841_29714158
33510	chr7	+	2656	4	NIC	ENSMUSG00000025508.14	novel	964	5	NA	NA	-18	-20	intron_retention	FALSE	canonical	3	11307	junction_1	1690.40120155608	27	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTTTTTATGTATCTTG	2398	False	NA	NA	False	NA	NA	NA	141027563	141031242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_141027621_141027820_141027945_141028638_141031016_141031144
33511	chr10	-	3363	12	FSM	ENSMUSG00000062075.14	ENSMUST00000179022.8	3370	12	3	4	3	-4	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	166	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGCCTCAGAGTAGATC	3114	False	NA	NA	False	NA	NA	NA	80754076	80737201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
33512	chr14	+	1877	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	196.861327391192	1401	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	51045381	51058757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_51045445_51047462_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
33514	chr15	+	1534	13	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	-453	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_1	5917.27760226122	1835	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	103148405	103155119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103154772_103154849_103154971
33515	chr10	+	1693	5	FSM	ENSMUSG00000020265.17	ENSMUST00000137841.9	1005	5	16	-704	0	-8	multi-exon	FALSE	canonical	3	61	junction_3	668.550858200033	988	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTGTCTCTTGGCCTA	NA	False	NA	NA	False	NA	NA	NA	77442058	77453248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451760_77451869_77451981
33516	chr5	+	3863	18	NIC	ENSMUSG00000029291.12	novel	2077	14	NA	NA	17	-1	intron_retention	FALSE	canonical	1	1	junction_1	29.9036515111854	86	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATTGTGTTGGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	88731411	88799250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_88732177_88762799_88762974_88764320_88764439_88765193_88765296_88769159_88769284_88775079_88775142_88775883_88775950_88778395_88778466_88780297_88780391_88783050_88783135_88785050_88785219_88786839_88786938_88790787_88790908_88791926_88792024_88793395_88793461_88795077_88795106_88796114_88796184_88797690
33517	chr5	-	2054	20	NNC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	-26	5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	83.7169416294544	572	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCATAATTCTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	107745469	107696827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107709914_107709985_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
33518	chrX	-	3060	8	NNC	ENSMUSG00000031386.15	novel	3480	10	NA	NA	-623	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	170.540078478189	9	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCATCTGGTATTTACCC	NA	False	NA	NA	False	NA	NA	NA	73010586	72986403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72990870_73010084
33519	chr7	-	2149	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	-11	291	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	331.9070969227	148	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAAGAGAATTTGAGAAT	NA	False	NA	NA	False	NA	NA	NA	46569703	46538405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558740_46560492_46560559_46563125_46563211_46569568
33520	chr10	+	1830	11	FSM	ENSMUSG00000019794.14	ENSMUST00000019929.13	1774	11	-61	5	-61	-4	multi-exon	TRUE	canonical	3	353	junction_4	21.6323831327018	759	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTCTTTGTTTCAATTT	NA	False	NA	NA	False	NA	NA	NA	7601702	7638908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
33521	chr1	-	3274	9	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	-28	0	intron_retention	FALSE	canonical	3	87	junction_7	17.1386806668425	66	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5228	False	NA	NA	False	NA	NA	NA	171108721	171104564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247_171108343_171108446
33522	chr2	-	1556	13	ISM	ENSMUSG00000027185.16	ENSMUST00000144590.9	3497	27	-19	10677	18	-530	5prime_fragment	FALSE	canonical	3	271	junction_9	33.0356499355873	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTACCGAGCAGGCCTCT	NA	False	NA	NA	False	NA	NA	NA	103591568	103565213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
33523	chr8	-	2889	6	NNC	ENSMUSG00000044600.15	novel	2892	5	NA	NA	6	-23	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	212.508823346232	1380	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAGAGTTACCATGACAA	NA	False	NA	NA	False	NA	NA	NA	73324900	73319054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73321653_73322699_73322791_73323587_73323640_73323809_73323863_73324717_73324760_73324847
33524	chr11	+	3417	20	NNC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	10	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	205.063100889118	1	137	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTACTTACTTTTAATAA	NA	False	NA	NA	False	NA	NA	NA	119158863	119176240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119159049_119160913_119161505_119163695_119163839_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168330_119168441_119168519_119168598_119169090_119169205_119169701_119169829_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
33525	chr15	-	1267	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	12082.7250278555	6	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	3578	False	NA	NA	False	NA	NA	NA	79967547	79961992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964578_79964754_79965096_79965233_79965815_79965974_79966590_79966784_79967524
33526	chrX	-	1983	12	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-2104	-5	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_11	407.113747379998	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72828078	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72827286
33527	chr13	-	1767	9	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.8175056358265	1	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACACAATGAATGTGATC	6808	False	NA	NA	False	NA	NA	NA	62860567	62847922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848488_62848571_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62854209_62854379_62855967_62856024_62859347_62859416_62860451
33528	chr6	+	1722	11	NIC	ENSMUSG00000068328.11	novel	1491	12	NA	NA	-4	1	intron_retention	FALSE	canonical	3	25	junction_9	328.64937243208	704	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGTCTCTGTTGCCTC	5417	False	NA	NA	False	NA	NA	NA	83031705	83034658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034194_83034376_83034478
33529	chr2	+	239	1	Intergenic	novelGene_2852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAGAATTTAGGGATAG	NA	False	NA	NA	False	NA	NA	NA	177259051	177259290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_177259100_177259300
33530	chr2	+	5454	17	Antisense	novelGene_ENSMUSG00002076855.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	164	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCCGGTGCCCAGCCG	NA	False	NA	NA	False	NA	NA	NA	33023963	33261443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_33027718_33031003_33031098_33033054_33033162_33033311_33033411_33035414_33035516_33036581_33036666_33048921_33049048_33058191_33058264_33062431_33062524_33064422_33064566_33150493_33150617_33163570_33163666_33166161_33166250_33174838_33174914_33226516_33226648_33230738_33230848_33261282
33531	chr1	+	3232	11	NIC	ENSMUSG00000041684.12	novel	3313	11	NA	NA	-2	7	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	19.4846093109408	3	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTATGAATTTTAATGTCT	NA	False	NA	NA	False	NA	NA	NA	44158157	44183677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_44158356_44159333_44159435_44165502_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
33532	chr3	-	1785	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	4	1781	4	-34	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGCCACGCAATAAAGCA	NA	False	NA	NA	False	NA	NA	NA	108352510	108333961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
33533	chrX	-	2555	20	Antisense	novelGene_ENSMUSG00000000037.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGCCCAAGCTGCCAATC	NA	False	NA	NA	False	NA	NA	NA	160014999	159900158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_159900321_159904019_159904099_159927711_159927836_159936827_159936906_159954484_159954530_159960240_159960312_159961030_159961266_159970257_159970347_159975197_159975443_159985008_159985092_159992188_159992264_159992602_159992678_159996234_159996319_159998173_159998258_160006150_160006235_160008870_160008955_160010366_160010451_160011670_160011755_160013084_160013169_160014393
33534	chr11	+	1905	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	238.262376383683	14	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120564176	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
33535	chr7	+	5045	2	ISM	ENSMUSG00000053198.15	ENSMUST00000065487.7	4497	3	44	0	44	0	intron_retention	FALSE	canonical	3	43	junction_1	0	49	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATGTGTCTTGGTTCTCG	NA	False	NA	NA	False	NA	NA	NA	27207274	27219466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27207529_27214675
33540	chr7	-	2079	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	35	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	325	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGTGTGTATGAGT	NA	False	NA	NA	False	NA	NA	NA	80550982	80540470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
33541	chr15	+	1752	1	Intergenic	novelGene_3274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCACAACAATGAGGAAACCA	NA	False	NA	NA	False	NA	NA	NA	37044425	37046177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_37044400_37046200
33542	chr13	+	1789	1	Genic_Genomic	ENSMUSG00000049517.9	novel	NA	NA	NA	NA	-49	6	mono-exon	FALSE	NA	NA	NA	NA	NA	97	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATAGGATAATTTTCGGT	NA	False	NA	NA	False	NA	NA	NA	91071286	91073075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_91071300_91073100
33543	chr6	-	1790	9	NNC	ENSMUSG00000048930.13	novel	2848	9	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	135.848951044901	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGTTATAAAAAAACCAC	NA	False	NA	NA	False	NA	NA	NA	113354343	113343619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352298_113352800_113353026_113354276
33544	chr5	-	3021	2	ISM	ENSMUSG00000058291.15	ENSMUST00000085852.11	3318	5	41	9272	21	1931	5prime_fragment	FALSE	canonical	3	94	junction_1	0	4	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGTGCTAGCACAGTGTA	1775	False	NA	NA	False	NA	NA	NA	138617979	138612517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_138615430_138617870
33546	chrX	+	1391	4	ISM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	12262	0	12262	0	3prime_fragment	FALSE	canonical	3	1771	junction_3	116.378692207809	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139369623	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_139369709_139372745_139372920_139374527_139374688_139375917
33548	chr17	+	2935	5	FSM	ENSMUSG00000007038.6	ENSMUST00000173269.2	3619	5	29	655	29	-623	multi-exon	FALSE	canonical	3	117	junction_3	25.7001945517928	2	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATTTTTGATGCAGAA	8013	False	NA	NA	False	NA	NA	NA	35150318	35154274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35153162_35153258_35153482_35153580
33549	chr2	+	693	8	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	135	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	512.504056728593	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	NA	False	NA	NA	False	NA	NA	NA	127437727	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444348_127445638
33550	chr14	+	3575	6	FSM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	95	8	36	-8	multi-exon	FALSE	canonical	3	340	junction_4	10.4957134107215	114	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTCAGTGAGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	66534574	66548865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260_66545380_66546183
33551	chr13	-	4686	4	FSM	ENSMUSG00000098905.3	ENSMUST00000081582.8	4677	4	-11	2	-11	-2	multi-exon	FALSE	canonical	3	11	junction_1	6.64997911442	67	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTGAGGCTGGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	67508735	67487371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67491722_67493413_67493510_67495906_67496034_67508622
33552	SIRV1	-	1381	6	FSM	SIRV1A	SIRV101	1561	6	166	14	20	-8	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCATTACTTTGAATCG	NA	False	NA	NA	False	NA	NA	NA	10620	1014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
33553	chr15	-	2534	15	NIC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	33	-12	intron_retention	FALSE	canonical	3	559	junction_10	45.2242146624652	1	93	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACAGTCTTGACCCTGGC	NA	False	NA	NA	False	NA	NA	NA	76361444	76337200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76337579_76337662_76337771_76337843_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
33555	chr2	-	3137	18	NNC	ENSMUSG00000026915.17	novel	3144	18	NA	NA	18	-3	at_least_one_novel_splicesite	FALSE	canonical	2	65	junction_17	156.356305014051	290	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTCTTTTGTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	37593342	37473170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_37474119_37476521_37476567_37480668_37480793_37486715_37486857_37489132_37489268_37490756_37490916_37492946_37493147_37493933_37494027_37514184_37514297_37514504_37514603_37515189_37515302_37516493_37516590_37517446_37517539_37525435_37525581_37530862_37531029_37535482_37535704_37537127_37537298_37593262
33556	chr2	-	2368	4	Antisense	novelGene_ENSMUSG00000077698.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGAGAGCGGCGGCGAACC	NA	False	NA	NA	False	NA	NA	NA	166908132	166905141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_166905217_166905554_166906373_166906578_166907912_166907990
33558	chr8	+	2739	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	-33	0	-33	0	multi-exon	FALSE	canonical	3	107	junction_2	8.49941174435031	309	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGTCCTGCTCTGA	6164	False	NA	NA	False	NA	NA	NA	106876997	106891347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
33559	chr7	+	2036	3	NNC	ENSMUSG00000074365.14	novel	2090	3	NA	NA	-4	78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	128.5	4001	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATCTCTTTCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	15631326	15634301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_15631478_15632369_15633033_15633079
33560	chr5	+	1447	8	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	328.349490261675	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCTGTCTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	73450145	73471410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_73450320_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
33561	chr9	-	3009	12	NNC	ENSMUSG00000032113.17	novel	2142	12	NA	NA	-12	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	170.215565806936	1	85	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTATGTTGTCTTTCCT	709	False	NA	NA	False	NA	NA	NA	36637893	36619760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625772_36627783_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
33562	chr5	-	3260	19	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	25	6	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_10	51.6278229132842	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCAAGCCAGACCTCTC	974	False	NA	NA	False	NA	NA	NA	36987972	36964258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973537_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
33563	chr4	-	3048	8	Antisense	novelGene_ENSMUSG00000028601.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	58	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCCGGGGCGGGCGAGGC	NA	False	NA	NA	False	NA	NA	NA	108036475	108022662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108022857_108026909_108026978_108027055_108027422_108029287_108031045_108031179_108031370_108034267_108034319_108035565_108035613_108036100
33564	chr11	-	1917	9	NNC	ENSMUSG00000015837.16	novel	2037	8	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	325.316672643749	8	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCTGTGATCCGTACG	NA	False	NA	NA	False	NA	NA	NA	50101618	50090981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50091775_50093225_50093422_50093640_50093685_50093765_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
33565	chr1	-	3287	6	Antisense	novelGene_ENSMUSG00000026456.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGGAAAGATCCCACAATG	5221	False	NA	NA	False	NA	NA	NA	134339472	134333748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_134334200_134334335_134334409_134334782_134334889_134335309_134335440_134336139_134337422_134338227
33566	chr11	-	1910	5	FSM	ENSMUSG00000009894.16	ENSMUST00000010038.10	1896	5	-23	9	-15	1	multi-exon	FALSE	canonical	3	264	junction_2	15.4110350074224	906	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGAGGAGCCGGGTCTA	NA	False	NA	NA	False	NA	NA	NA	59340848	59297968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59340740
33567	chr2	-	1500	5	Antisense	novelGene_ENSMUSG00000032966.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1493	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTGGAGCCGGAGCGGACC	NA	False	NA	NA	False	NA	NA	NA	151403611	151384559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_151384664_151384736_151384784_151399303_151399417_151401375_151401539_151402538
33569	chr13	+	3998	8	NNC	ENSMUSG00000114633.2	novel	523	2	NA	NA	-5321	-219	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	141	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGGAGACCCGAGTCAG	NA	False	NA	NA	False	NA	NA	NA	55678486	55684218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55678547_55678995_55679110_55679195_55679263_55679347_55679739_55679847_55679922_55680159_55680292_55680810_55683864_55684111
33570	chr2	-	1951	13	FSM	ENSMUSG00000027423.16	ENSMUST00000028909.5	2419	13	58	410	58	-410	multi-exon	FALSE	canonical	3	1195	junction_10	117.133352305064	59	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATATGGAGTGCTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	144112434	144092452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296
33573	chr3	+	2044	14	Antisense	novelGene_ENSMUSG00000105201.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCAGCGCGCGCAGCTA	NA	False	NA	NA	False	NA	NA	NA	157717270	157742237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157717841_157717946_157718086_157718416_157718534_157719588_157719679_157721958_157722090_157723445_157723524_157724943_157725077_157727012_157727063_157727596_157727690_157728477_157728587_157728878_157728997_157732361_157732496_157737088_157737285_157742151
33574	chr18	+	1623	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-107	-161	-107	161	mono-exon	FALSE	NA	NA	NA	NA	NA	4	80	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAGAAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	82356479	82358102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82358100
33575	chr5	+	4045	9	NNC	ENSMUSG00000066894.15	novel	4236	10	NA	NA	-30	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	9.52299847737046	64	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAACATACATTTCT	NA	False	NA	NA	False	NA	NA	NA	117457326	117493059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_117457569_117461564_117461646_117462917_117463200_117472832_117473133_117476271_117476527_117481790_117482079_117486359_117486481_117489624_117489857_117490815
33577	chr15	+	2229	11	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	43	-3	intron_retention	FALSE	canonical	3	197	junction_6	33.0992447043735	175	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACCTTGGGATCCTGGC	4756	False	NA	NA	False	NA	NA	NA	76215473	76219095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76218091_76218213_76218405_76218489_76218661_76218781
33580	chr2	-	2092	10	NNC	ENSMUSG00000005882.19	novel	2633	10	NA	NA	-4	-245	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	140.736159769502	2	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCCTATACTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	155771984	155689085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155690447_155693328_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
33581	chr8	+	3417	13	NNC	ENSMUSG00000001482.16	novel	3191	12	NA	NA	67	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	103.021134563092	1	118	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	NA	False	NA	NA	NA	124170113	124190001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124170185_124174055_124174349_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
33582	chr11	-	2377	18	NNC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.6898838495836	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3621	False	NA	NA	False	NA	NA	NA	54846909	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54801982_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
33583	chr4	+	4311	7	NNC	ENSMUSG00000028519.17	novel	641	7	NA	NA	108495	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	2.26691175145591	9	84	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTAGCCTGGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	104570987	104602039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_104571009_104575406_104575470_104577718_104577828_104584756_104585306_104588821_104588950_104589266_104589378_104598709
33584	chr8	-	1095	12	NNC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1177.75243999635	40	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321103	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299458_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
33585	chrX	-	1632	9	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-10	0	intron_retention	FALSE	canonical	3	225	junction_7	606.585100686623	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	72974408	72965728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72973460_72973610_72973687_72974013_72974124_72974319
33586	chr2	+	3838	7	FSM	ENSMUSG00000044647.17	ENSMUST00000122912.8	10672	7	75	6759	0	-819	multi-exon	FALSE	canonical	1	2	junction_1	4.6696419087073	53	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTTGGGTTTGTCATGC	5678	False	NA	NA	False	NA	NA	NA	65676185	65855131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_65676229_65690874_65691037_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
33589	chr4	+	4874	19	NNC	ENSMUSG00000094958.2	novel	1812	4	NA	NA	-80793	-1302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	54	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGAAAGCGCGGCCGAGC	NA	False	NA	NA	False	NA	NA	NA	108496052	108637799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108496616_108499282_108499459_108501529_108501639_108507380_108507544_108514123_108514205_108517761_108517913_108531649_108531754_108534905_108534990_108538098_108538323_108539329_108539487_108542105_108542231_108546347_108546466_108548817_108548989_108550516_108550694_108552965_108553064_108574983_108577010_108581003_108581107_108584648_108584742_108637648
33590	chr2	-	3389	2	ISM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	30	24197	30	2770	5prime_fragment	FALSE	canonical	3	176	junction_1	0	107	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGACTATACTGGACAGC	NA	False	NA	NA	False	NA	NA	NA	157870323	157847919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_157851279_157870293
33591	chr5	-	2642	5	NNC	ENSMUSG00000029213.12	novel	3895	5	NA	NA	10	3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	145.856736217427	5	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGCTTGATTTCAGT	NA	False	NA	NA	False	NA	NA	NA	72325489	72316350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_72317237_72318250_72319630_72320064_72320218_72322693_72322850_72325421
33592	chr16	+	2854	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	27	-722	-2	722	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	791	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCAGGTGGTGCTAAAAA	NA	False	NA	NA	False	NA	NA	NA	59292164	59313546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
33593	chr8	-	2576	6	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCCCGGGCTGGGCGCCT	NA	False	NA	NA	False	NA	NA	NA	20048139	20016498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20016683_20030544_20030754_20039780_20039902_20041809_20041980_20045732_20046281_20046795
33594	chr10	-	2217	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	9	-13	9	13	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	719	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATATGTTGTGTTAGTTA	5790	False	NA	NA	False	NA	NA	NA	62859664	62850429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
33595	chr2	-	779	1	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-12	-15519	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGCCTTAATACAGTTA	9558	False	NA	NA	False	NA	NA	NA	10085267	10084488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10084500_10085300
33596	chr11	-	2681	6	NIC	ENSMUSG00000042148.9	novel	2915	7	NA	NA	-2	-5	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	106.914919445323	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCTGAGCGTGTGTCC	5003	False	NA	NA	False	NA	NA	NA	63970296	63853457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_63855355_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
33597	chrX	-	2536	10	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-80	1448	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	433.772711719051	2670	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTCCAAATGCTTGAATAT	NA	False	NA	NA	False	NA	NA	NA	52759878	52743419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_52744172_52744387_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
33598	chr7	-	1980	16	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	788.304678830886	2	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGCTCAGCCTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	33929717	33901581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905372_33907051_33907178_33907633_33907736_33915380_33915466_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
33599	chr2	+	2155	5	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2979	-4	26	0	intron_retention	FALSE	canonical	3	200	junction_1	49.3583832798442	595	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	NA	False	NA	NA	NA	32518427	32525070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305
33601	chr1	+	2626	19	Antisense	novelGene_ENSMUSG00000094410.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCAAAGATGGCGCCCGG	NA	False	NA	NA	False	NA	NA	NA	133549463	133589107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_133549542_133549856_133549922_133550720_133550889_133552220_133552551_133553587_133553671_133554508_133555011_133561501_133561596_133563731_133563797_133565089_133565198_133566270_133566350_133566568_133566688_133566777_133566982_133568349_133568476_133573466_133573587_133575074_133575270_133581715_133581773_133583082_133583137_133588313_133588356_133588970
33602	chr7	-	2117	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	-3	1	-3	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	1245	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7922	False	NA	NA	False	NA	NA	NA	126641646	126626903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
33603	chr7	+	1437	4	ISM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	-2	0	0	intron_retention	FALSE	canonical	3	8457	junction_1	2925.97041832088	163	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1309	False	NA	NA	False	NA	NA	NA	3707036	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731
33604	chr5	+	735	1	NIC	ENSMUSG00000056310.15	novel	1867	8	NA	NA	18049	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAGTAGAATAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	130305819	130306554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_130305800_130306600
33606	chr8	+	2679	7	FSM	ENSMUSG00000034518.15	ENSMUST00000109940.2	2656	7	42	-65	42	0	multi-exon	FALSE	canonical	3	11	junction_1	40.0489284084689	181	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTTAGCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	75742891	75758606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75743035_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
33608	chr11	-	2586	4	NIC	ENSMUSG00000020910.17	novel	1531	5	NA	NA	0	7	intron_retention	FALSE	canonical	3	79	junction_3	12.2474487139159	79	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGCATATACTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	66943411	66928723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_66929272_66931044_66932934_66942506_66942605_66943360
33612	chr8	+	2852	24	FSM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	60	1402	9	-19	multi-exon	FALSE	canonical	3	576	junction_9	55.7196601685668	1	92	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTCACCTTTGACTCTA	NA	False	NA	NA	False	NA	NA	NA	108163056	108283825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
33613	chr11	-	3039	6	NIC	ENSMUSG00000001034.18	novel	3019	7	NA	NA	-30	-5	intron_retention	FALSE	canonical	3	175	junction_4	30.6502854799103	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCTGCGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	61385044	61379642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61382513_61383729_61383896_61384472_61384781_61384905
33614	chr8	+	1005	6	ISM	ENSMUSG00000031467.11	ENSMUST00000149565.8	10779	8	22504	9314	22502	-1374	3prime_fragment	FALSE	canonical	3	636	junction_2	26.0276775759959	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGTTGTTTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	18918796	18932063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929745_18931753
33615	chr8	-	1841	13	NNC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	445.113304863679	2	56	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737907	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728542_112729953_112730073_112732263_112732421_112737841
33616	chr17	-	2389	3	NIC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	-10	62	intron_retention	FALSE	canonical	3	1981	junction_2	192.5	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAGATGATGCTGAC	3394	False	NA	NA	False	NA	NA	NA	71297535	71280958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_71281492_71282453_71284242_71297467
33617	chr2	-	2843	6	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91.4054702958198	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	NA	NA	NA	106804735	106792871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_106793207_106793636_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
33618	chrX	-	3043	16	NNC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	27	-866	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	31.2876262371493	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTTCATGTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	10082945	10027712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068273_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
33619	chr7	-	959	6	Antisense	novelGene_ENSMUSG00000033685.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGGGTGTGGCTCAGGG	NA	False	NA	NA	False	NA	NA	NA	100148043	100145719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100145841_100145928_100146153_100146298_100146513_100147282_100147478_100147552_100147654_100147939
33620	chr3	+	2538	10	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	4	-1	intron_retention	FALSE	canonical	3	509	junction_1	102.283315077337	44	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAAGTGCATGTTACTGC	NA	False	NA	NA	False	NA	NA	NA	145281990	145309867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145301957_145306212_145306335_145309689
33622	chr3	+	1949	10	NNC	ENSMUSG00000028199.19	novel	2606	10	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	59.7856252593742	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAAGCCCTTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	154302856	154328812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317120_154317161_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
33623	chr17	+	1523	10	NIC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-5	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_6	751.836976681895	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAACAACCGTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	35460775	35472653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35471722_35471833_35471939_35472085_35472182_35472331_35472448
33624	chr12	-	2810	11	NIC	ENSMUSG00000020628.17	novel	3377	12	NA	NA	-18	-401	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	39.1715457953857	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTATAGGCCTAAACAATC	8302	False	NA	NA	False	NA	NA	NA	28800399	28741028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800160
33625	chr2	-	1203	8	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	10	-970	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4507.43337981488	2	26	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCGTTAAATTTGGTTAAA	3746	False	NA	NA	False	NA	NA	NA	154734741	154714307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720419_154729668_154729728_154730102_154730281_154734609
33626	chrX	+	2278	9	NNC	ENSMUSG00000044150.13	novel	2513	11	NA	NA	-10	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	204.350189625554	16	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTACCTGGCAGTTGGT	NA	False	NA	NA	False	NA	NA	NA	158315704	158376063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342909_158375694
33627	chr11	-	1764	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	727.721952169523	1	43	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5271	False	NA	NA	False	NA	NA	NA	88846221	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815452_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
33628	chr1	+	3396	22	FSM	ENSMUSG00000062590.14	ENSMUST00000135973.8	4696	22	33	1267	2	-1267	multi-exon	FALSE	canonical	3	60	junction_21	14.7732675162462	104	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTACAGAGTATTTCTT	NA	False	NA	NA	False	NA	NA	NA	86082538	86186282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998_86180115_86184947
33629	SIRV4001	+	3979	1	FSM	SIRV4001A	SIRV4001	3997	1	0	18	0	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	98	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAAGCGTACCGGGT	NA	False	NA	NA	False	NA	NA	NA	0	3979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4001_+_0_4000
33630	chrX	-	1725	3	FSM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	42	1032	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	78679188	78666836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_78668390_78671446_78671527_78679096
33631	chr15	-	2440	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	89	345	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1411.44650541716	1	86	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	36	True	NA	NA	False	NA	NA	NA	11399598	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387360_11387454_11387571_11387647_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392062_11392121_11392317_11392436_11392872_11392995_11393242_11393363_11394313_11394501_11397266_11397348_11399571
33632	chr12	-	1034	8	NIC	ENSMUSG00000021240.7	novel	2410	18	NA	NA	1229	2073	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	73.7383681591579	3	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGGCCTGTGGGAGGGC	NA	False	NA	NA	False	NA	NA	NA	84660932	84652900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84658494_84658546_84659098_84659225_84659553_84659671_84660678
33633	chr6	-	1520	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	-2	-87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4307.73635451382	3	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAAAGTTCCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	87828006	87820150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822757_87827885
33634	chr6	+	1511	11	NIC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	960	junction_9	80.8337182121421	567	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5423	False	NA	NA	False	NA	NA	NA	83031711	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
33636	chr2	-	2407	6	NIC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	-8	0	intron_retention	FALSE	canonical	3	1877	junction_5	42.6680208118446	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	NA	False	NA	NA	NA	90735054	90724979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90734833_90734927
33637	chr14	+	1592	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1063.01719438378	1	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6596	False	NA	NA	False	NA	NA	NA	76741974	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742063_76742109_76742282_76742688_76742738_76743916
33638	chr5	+	2396	6	NNC	ENSMUSG00000029581.15	novel	2157	6	NA	NA	13	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1109.30194266485	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCGTGTGTGTCTCAGG	NA	False	NA	NA	False	NA	NA	NA	142946110	142958938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142946338_142946601_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
33639	chr17	+	2338	16	NIC	ENSMUSG00000002833.12	novel	3354	12	NA	NA	41	3	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	208.4942205434	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACAGCTTTTATTGGCTT	NA	False	NA	NA	False	NA	NA	NA	56388464	56407601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
33641	chr14	+	2155	10	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	24.6666666666667	4	48	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCAGTGTACGTGGCC	NA	False	NA	NA	False	NA	NA	NA	70004956	70021857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015158_70015265_70017952_70018023_70019680_70019972_70020044_70020229_70021151
33642	chr7	-	3138	10	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-22	-20	intron_retention	FALSE	canonical	3	1078	junction_5	56.5733436335218	2	108	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCAAACCTCATCTCAAA	NA	False	NA	NA	False	NA	NA	NA	16761756	16738584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16741172_16741650_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
33643	chr4	+	3056	2	FSM	ENSMUSG00000087332.2	ENSMUST00000132108.2	354	2	-23	-2679	-23	2679	multi-exon	TRUE	canonical	3	84	junction_1	0	267	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGGTGGAACGTGCATTG	NA	False	NA	NA	False	NA	NA	NA	99457713	99463927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99457876_99461033
33644	chr4	-	1804	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	40	574	0	-574	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	125	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGTGCTCATAAGGGGG	-27	True	NA	NA	False	NA	NA	NA	40757883	40737115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
33645	chr2	-	1739	8	NNC	ENSMUSG00000018322.11	novel	1923	7	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.70982138013	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5955	False	NA	NA	False	NA	NA	NA	163913015	163895459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163896250_163896359_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
33646	chr11	-	2491	18	NNC	ENSMUSG00000020400.18	novel	2834	18	NA	NA	97	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.856475082368	1	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAACTTGAAGATCAACAT	3754	False	NA	NA	False	NA	NA	NA	54846776	54801629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802109_54802261_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846673
33647	chr4	-	1598	6	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	18	98	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	28.4675253578529	3	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTTCTGGATTGTCTAA	NA	False	NA	NA	False	NA	NA	NA	116413114	116408731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116409308_116409505_116409557_116409698_116410151_116410588_116410927_116411964_116412101_116413069
33648	chr14	-	2355	5	NNC	ENSMUSG00000002320.16	novel	2398	5	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	165.610235190945	15	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCCTGTCGTTGGAAGT	5221	False	NA	NA	False	NA	NA	NA	55880782	55873425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55874070_55875479_55875651_55877841_55878028_55878423_55879046_55880050
33650	chr4	-	3827	7	Fusion	ENSMUSG00000073705.11_ENSMUSG00000028971.5	novel	1110	5	NA	NA	7	-158	intron_retention	TRUE	canonical	0	0	junction_2	182.676778917178	503	85	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGAGCTTTCTTCTTATG	NA	False	NA	NA	False	NA	NA	NA	149222015	149209648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_149211603_149211738_149212784_149212865_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
33651	chr2	+	1942	11	NNC	ENSMUSG00000027323.11	novel	3368	10	NA	NA	36	865	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	247.228153736584	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGGAAGAAAGCTCAAAAG	NA	False	NA	NA	False	NA	NA	NA	118943333	118966554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529_118965744_118965906
33652	chrUn_JH584304v1	-	1935	7	Intergenic	novelGene_4603	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_2	288.054200146817	78	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAATCTTCTGTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	59039	52189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_53770_54335_54480_54720_54868_55111_55702_56985_57152_58563
33653	chr4	+	2260	9	NIC	ENSMUSG00000028601.19	novel	1319	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	90	junction_3	235.736313229422	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	NA	False	NA	NA	NA	108022662	108036505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
33654	chr9	-	2204	6	ISM	ENSMUSG00000036057.12	ENSMUST00000040021.12	5346	25	20436	37	-1128	-37	3prime_fragment	FALSE	canonical	3	78	junction_2	13.5410487038486	135	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGCTGAAATAATAAACTT	NA	False	NA	NA	False	NA	NA	NA	110216845	110214186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_110214801_110214881_110214996_110215085_110215225_110215312_110215418_110215521_110215707_110215798
33655	chr6	-	1517	8	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	71	-57	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2035.80510073122	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTTGTAAGTTATATTG	NA	False	NA	NA	False	NA	NA	NA	125471683	125437285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437697_125437778_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
33656	chr3	+	2441	18	NNC	ENSMUSG00000027774.17	novel	4078	18	NA	NA	30	142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	154.726905303872	3	83	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTGCTGGCCCACGTTC	NA	False	NA	NA	False	NA	NA	NA	67337478	67382279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347590_67350891_67351043_67352105_67352191_67357015_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
33657	chr5	-	2381	17	NNC	ENSMUSG00000029472.14	novel	2413	17	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	593.03030065925	1	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTCTGATCAGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	122959343	122925805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940882_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
33658	chr7	+	629	1	Genic_Genomic	ENSMUSG00000059070.17	novel	NA	NA	NA	NA	-114	-4154	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGTGTCTAAATGTACCT	3194	False	NA	NA	False	NA	NA	NA	45364766	45365395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_45364800_45365400
33659	chr7	+	1891	6	NNC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	513.846124827268	290	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTCCGGTGTCTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	25358626	25367454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_25358809_25362561_25362874_25363037_25363874_25364845_25364987_25365677_25365768_25367124
33660	chr4	+	2003	5	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2800	4	NA	NA	-3382	-37	multi-exon	TRUE	non_canonical	0	0	junction_2	197.886804764744	1	94	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTAACTAACTCCAATAAA	NA	False	NA	NA	False	NA	NA	NA	147413481	147669618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147413566_147596801_147596997_147597081_147597110_147599036_147599216_147668101
33661	chr7	+	3388	9	Antisense	novelGene_ENSMUSG00000100068.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	16	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCACTCCTAACGGCCG	NA	False	NA	NA	False	NA	NA	NA	35166387	35237103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_35168221_35203858_35204498_35208201_35208393_35210639_35210730_35211358_35211413_35221344_35221472_35223369_35223498_35228535_35228699_35236940
33663	chr14	+	3412	17	FSM	ENSMUSG00000021901.11	ENSMUST00000022458.11	3460	17	30	18	-23	-4	multi-exon	TRUE	canonical	3	305	junction_12	31.9899886683318	347	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCTTCTGGTTGCTATC	NA	False	NA	NA	False	NA	NA	NA	30973436	30981883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979245_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
33664	chr7	+	2049	17	Antisense	novelGene_ENSMUSG00000099330.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTGGAAGGAGGAGTCAC	NA	False	NA	NA	False	NA	NA	NA	44182176	44188854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44182323_44182629_44182723_44182793_44182849_44183106_44183221_44183307_44183444_44183809_44183912_44183989_44184140_44184439_44184615_44185120_44185259_44185352_44185453_44187033_44187184_44187417_44187530_44187750_44187864_44188020_44188116_44188195_44188389_44188477_44188584_44188783
33666	chr13	+	1840	3	FSM	ENSMUSG00000052293.15	ENSMUST00000187792.2	824	3	-1	-1015	-1	515	multi-exon	FALSE	canonical	3	17	junction_1	631	19	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATGACTTACACAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	100788131	100793083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_100788337_100790698_100790792_100791541
33667	chr4	+	2316	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-25	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	255.597130917648	1	90	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGAACTGTGTTCGCTTT	NA	False	NA	NA	False	NA	NA	NA	124923825	124949170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934910_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946644_124947247_124947328_124947934_124948021_124948976
33669	chr2	-	1629	4	Antisense	novelGene_ENSMUSG00000015932.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	134	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGACTGCGGCTGCGCGCGC	NA	False	NA	NA	False	NA	NA	NA	143785244	143757418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_143757567_143780303_143780620_143781876_143781917_143784119
33671	chr3	+	1867	14	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-29	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	391.989916547041	1	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTGTCCTAGAAGCGTG	NA	False	NA	NA	False	NA	NA	NA	32762884	32781107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774165_32774286_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
33672	chr7	+	2181	8	NNC	ENSMUSG00000030990.19	novel	1254	8	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	65.6384655767128	454	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	637	False	NA	NA	False	NA	NA	NA	101872277	101887771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101872358_101872585_101872698_101875477_101875653_101884898_101885080_101885300_101885554_101885654_101885762_101886328_101886438_101886607
33673	chrX	+	2908	3	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	3	-2	intron_retention	FALSE	canonical	3	112	junction_2	40	1	87	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAAAAAAGCACTGTCT	NA	False	NA	NA	False	NA	NA	NA	133618764	133622655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133619742_133620375_133620475_133620823
33674	chr4	-	1309	8	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-46	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	365.178904994608	4	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGTGGGTTTTATTTAG	2567	False	NA	NA	False	NA	NA	NA	129229088	129203301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129215655_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
33675	chr17	-	4277	1	Genic_Genomic	ENSMUSG00000100572.2	novel	NA	NA	NA	NA	0	2430	mono-exon	FALSE	NA	NA	NA	NA	NA	31	55	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATTAAAATAGACCTATCA	NA	False	NA	NA	False	NA	NA	NA	69584203	69579926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_69579900_69584200
33676	chr14	+	1121	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	36	605	-16	-10	multi-exon	FALSE	canonical	3	2255	junction_1	40	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTCCTTATACAAAACC	6575	False	NA	NA	False	NA	NA	NA	76741953	76744600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
33677	chr18	+	2444	16	NIC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	849	-8	intron_retention	FALSE	non_canonical	0	0	junction_10	187.250586707284	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACCTGCTGTCTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	36878661	36890679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
33678	chr12	+	2726	11	NNC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	26	7	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	75.8209074068624	19	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCTGTCTGTGGCATCC	NA	False	NA	NA	False	NA	NA	NA	117807648	117842448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_117807693_117812532_117812694_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
33679	chr6	+	2506	2	FSM	ENSMUSG00000068328.11	ENSMUST00000204383.2	361	2	0	-2145	0	-79	multi-exon	FALSE	canonical	3	1128	junction_1	0	1	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACGTTTGCCAAGTCTTC	5423	False	NA	NA	False	NA	NA	NA	83031711	83034295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83031814_83031891
33682	chr5	-	3568	31	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_30	59.8322562577151	138	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	134485136	134386509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
33683	chr16	-	3029	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	10	-12	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	35.9374456521328	177	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAAAAAAAACCCCGCTG	NA	False	NA	NA	False	NA	NA	NA	43710038	43681781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
33684	chr4	-	814	2	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	789	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	4523	False	NA	NA	False	NA	NA	NA	41093659	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093163_41093286
33685	chr16	-	3801	6	FSM	ENSMUSG00000050312.13	ENSMUST00000063089.12	3813	6	9	3	-2	-3	multi-exon	FALSE	canonical	3	18	junction_4	5.74804314527997	57	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATGATGCCTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	62607131	62552809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596995_62606150_62606261_62607033
33687	chr8	+	1664	9	NNC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	218.790424836189	25	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	43633579	43646921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_43633650_43634763_43634891_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
33688	chr6	-	2615	8	NNC	ENSMUSG00000039159.17	novel	4657	7	NA	NA	29	-1721	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	124.860902199044	7	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTCTGATTACCTCCCC	49	False	NA	NA	False	NA	NA	NA	30304492	30213008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30262145_30262223_30304050_30304138_30304412
33689	chr6	-	1510	1	ISM	ENSMUSG00000039159.17	ENSMUST00000102993.10	4657	7	91734	7	30998	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	35	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAAATGGCTGAACTTGA	NA	False	NA	NA	False	NA	NA	NA	30212804	30211294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_30211300_30212800
33691	chr5	+	1626	12	NNC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	502.46707058751	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCTATGCTTAATTGC	NA	False	NA	NA	False	NA	NA	NA	134611608	134627182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_134611741_134612055_134612229_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
33692	chr19	+	2975	5	ISM	ENSMUSG00000025202.9	ENSMUST00000026220.7	3489	6	12326	42	12326	-42	3prime_fragment	FALSE	canonical	3	12	junction_1	133.013157243936	52	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGCTTTCTCTGCCTCTC	759	False	NA	NA	False	NA	NA	NA	44204033	44232413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_44204124_44222661_44222793_44224209_44224416_44226814_44227048_44230098
33695	chr8	-	2162	15	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGGAAGTACTCCGCGGC	NA	False	NA	NA	False	NA	NA	NA	107649723	107620261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107620343_107621220_107621384_107624691_107624884_107625072_107625157_107627477_107627564_107630861_107631077_107632756_107632916_107633031_107633197_107638848_107638981_107639979_107640135_107642785_107642893_107644211_107644307_107645248_107645437_107648802_107648917_107649497
33696	chr12	+	2778	14	FSM	ENSMUSG00000020952.11	ENSMUST00000219434.2	2749	14	-28	-1	-28	1	multi-exon	FALSE	canonical	3	21	junction_13	120.151925523899	39	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACATTTTTTAAGATTT	NA	False	NA	NA	False	NA	NA	NA	51424334	51463999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462405
33697	chr2	-	2543	1	FSM	ENSMUSG00000070708.6	ENSMUST00000094653.6	822	1	-1727	6	-1727	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAACGGTCCGGGCTGTGCT	942	False	NA	NA	False	NA	NA	NA	162931502	162928959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_162929000_162931500
33698	chr18	-	2944	3	FSM	ENSMUSG00000056153.16	ENSMUST00000070116.12	6036	3	48	3044	-15	-39	multi-exon	FALSE	canonical	3	70	junction_1	76	163	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAAGGTTATTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	88912398	88886336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_88889043_88905332_88905458_88912285
33699	chr7	-	1441	11	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	0	-612	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	804.198259137633	107	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59654859	59632861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59652682_59652811_59654783
33700	chr15	+	1361	7	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	22	1	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	219.064424821152	154	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTCTGTGCTTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	78819429	78825065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78819895_78820008_78820100_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
33701	chr8	-	1300	6	NNC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	61	-162	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1017.37355971148	108	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	117720215	117708710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117718306_117718387_117720026
33703	chr16	-	1321	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAATAAAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_45973863_45974634
33704	chr8	-	1964	12	NNC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	-10263	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	515.624839594265	1	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCAGCAGTCATGCATGC	NA	False	NA	NA	False	NA	NA	NA	41813337	41793699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800085_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807949_41813289
33706	chr3	+	2678	10	NNC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	105	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	54.3775098753787	1	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCGTTCCTACCTTGG	NA	False	NA	NA	False	NA	NA	NA	95190359	95203475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202147_95202298_95202583_95202737_95202961
33707	chr11	+	1827	11	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	84	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	211.726450874708	1838	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1314	False	NA	NA	False	NA	NA	NA	101010847	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013389_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
33708	chr7	+	3022	10	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	1	-30	intron_retention	FALSE	canonical	1	6	junction_7	32.9975681857442	5	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTACATAATAAAATGGT	NA	False	NA	NA	False	NA	NA	NA	101714718	101732939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101729735_101729812_101730689_101730818_101731247
33709	chr5	+	3825	14	NNC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	4	-21	intron_retention	FALSE	non_canonical	0	0	junction_6	44.8989661324547	17	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATATTTTTGAAGCCT	NA	False	NA	NA	False	NA	NA	NA	143846825	143868239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143851622_143853173_143853342_143854397_143854500_143856326_143856427_143858833_143858920_143860294_143860451_143862038_143862892_143864916_143865116_143865759_143865861_143865998_143866169_143867833
33711	chr1	+	2553	7	NIC	ENSMUSG00000026240.13	novel	5383	8	NA	NA	15	-164	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	132.540140670247	221	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCTGCATTCCATATCC	6056	False	NA	NA	False	NA	NA	NA	86510674	86534536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_86510819_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
33712	chr6	+	2480	12	Antisense	novelGene_ENSMUSG00000030177.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	60	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACCTATCAGTCAGATACA	NA	False	NA	NA	False	NA	NA	NA	120301285	120331011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_120302452_120306051_120306207_120306293_120306423_120308774_120308993_120311729_120311888_120315035_120315122_120316095_120316158_120318931_120319030_120325345_120325492_120327167_120327349_120328651_120328681_120330959
33713	chr12	-	3221	6	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	5	-9	intron_retention	FALSE	canonical	3	55	junction_5	16.3878003404972	18	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTATCAACACCTGCAG	NA	False	NA	NA	False	NA	NA	NA	4283933	4263490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4264631_4265258_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
33714	chr6	-	1470	6	NNC	ENSMUSG00000067702.6	novel	1509	5	NA	NA	-1	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	266.448794330168	1669	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTCTCTAGTGTGTTGT	3460	False	NA	NA	False	NA	NA	NA	125263006	125255231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125255471_125255515_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
33715	chr17	+	1750	6	NNC	ENSMUSG00000046711.17	novel	1045	6	NA	NA	-1875	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	2459.61024554705	6	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27773595	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27773628_27773718_27773897_27778506_27778678_27779901_27779986_27780434_27780486_27781411
33716	chr12	-	2253	5	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	4110	5	NA	NA	-49	-1853	multi-exon	FALSE	canonical	3	143	junction_1	23.0705439901187	2	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTAATTTTTTTCTGAC	NA	False	NA	NA	False	NA	NA	NA	55201730	55102391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55201606
33717	chr9	+	2932	12	NIC	ENSMUSG00000032078.18	novel	2984	14	NA	NA	-20	120	intron_retention	FALSE	canonical	3	657	junction_6	45.9782557302906	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCCTCTGCGTTCATGTC	NA	False	NA	NA	False	NA	NA	NA	46184470	46192902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
33719	chr14	-	1452	8	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1143.27554840985	5	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734437_63737603_63737770_63746158
33720	chr11	+	2950	10	NIC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	35	-325	intron_retention	TRUE	canonical	1	2	junction_2	24.9701055832671	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAGGCAGCTCATGCTA	NA	False	NA	NA	False	NA	NA	NA	75239355	75296206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_75239578_75240494_75240641_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
33721	chr6	-	1868	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	191.0065443905	355	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAAAATGGGATTGTCT	4598	False	NA	NA	False	NA	NA	NA	49240959	49220866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229963_49230043_49240771
33723	chr1	+	2111	9	NIC	ENSMUSG00000006304.15	novel	1439	11	NA	NA	-9	0	intron_retention	FALSE	canonical	3	1867	junction_3	156.283346441647	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7872	False	NA	NA	False	NA	NA	NA	74275699	74307368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303613_74306929
33724	chr9	-	3711	12	Antisense	novelGene_ENSMUSG00000041064.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	55	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTCAAATACTAGGAAT	9469	False	NA	NA	False	NA	NA	NA	65503243	65494455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_65495676_65496285_65496416_65496492_65496621_65496730_65496883_65496990_65497107_65497226_65497335_65498999_65499138_65499401_65499511_65500541_65500630_65500736_65500881_65501664_65501858_65502058
33725	chr7	+	1408	8	NNC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-7	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2222.84952257232	3	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGCTAATGGGACTGCC	NA	False	NA	NA	False	NA	NA	NA	142606523	142621657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620441_142620887_142620971_142621048
33726	chr2	-	2564	9	NNC	ENSMUSG00000009207.16	novel	3195	13	NA	NA	7	-36	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	89.1203540163525	4	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATGGAGAACTGAAACT	NA	False	NA	NA	False	NA	NA	NA	74409253	74350720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_74352642_74359974_74360034_74378328_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
33727	chrX	+	675	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	-27	234	-27	-234	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGTATAGATGACTGCTA	NA	False	NA	NA	False	NA	NA	NA	51987437	51988112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_51987400_51988100
33728	chr1	+	2910	14	NIC	ENSMUSG00000026584.15	novel	4368	14	NA	NA	253	220	combination_of_known_junctions	FALSE	canonical	3	27	junction_2	22.8377347864782	3	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTTTTATGTGCTATGAA	NA	False	NA	NA	False	NA	NA	NA	163757626	163781591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_163757756_163761047_163761263_163762261_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
33729	chr8	+	2098	12	NIC	ENSMUSG00000025316.17	novel	1970	13	NA	NA	-8	1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_8	86.2362697180023	30	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGCTCAGTGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	122677305	122752917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122750741_122750886_122752302
33730	chr1	-	5851	6	FSM	ENSMUSG00000026564.10	ENSMUST00000085992.4	4018	6	-2	-1831	-2	1826	multi-exon	FALSE	canonical	2	3	junction_5	17.4768418199628	75	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACATTTGGTTTATGA	NA	False	NA	NA	False	NA	NA	NA	165955467	165923890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_165928956_165935541_165935760_165937620_165937853_165939599_165939695_165954638_165954773_165955360
33732	chr8	-	1336	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	18	0	18	0	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	34	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	23083756	23067101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
33733	chr18	-	1863	16	NIC	ENSMUSG00000053644.14	novel	1914	18	NA	NA	-13	-15	intron_retention	FALSE	canonical	2	2	junction_4	104.493572370106	6	22	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAGCTGCATTTAGCAAA	NA	False	NA	NA	False	NA	NA	NA	56695311	56659836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_56660080_56661348_56661425_56664561_56664881_56665052_56665170_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
33734	chrX	+	2139	9	NNC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	701.197446783001	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72235816	72246536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72235856_72237775_72237913_72238605_72238676_72240928_72241077_72241212_72241732_72241891_72241992_72243351_72243491_72245455_72245552_72245645
33735	chr15	-	3054	2	ISM	ENSMUSG00000118671.1	ENSMUST00000239552.1	12332	3	1052	20577	1052	-20577	5prime_fragment	FALSE	canonical	0	0	junction_1	0	13	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGAGGCCGTGTGCCG	9834	False	NA	NA	False	NA	NA	NA	76003343	75993906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_75996926_76003308
33737	chr7	+	2236	1	ISM	ENSMUSG00000053877.13	ENSMUST00000187040.7	10654	34	45963	3	25221	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCCGTGTAAGGAGGCTT	NA	False	NA	NA	False	NA	NA	NA	127158152	127160388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127158200_127160400
33738	chr6	+	3310	11	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	14837	0	intron_retention	FALSE	non_canonical	0	0	junction_5	626.049327130059	1	143	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	71823279	71852238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71823460_71828755_71829852_71830156_71830253_71833895_71834033_71837993_71838091_71839330_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
33739	chr2	-	3380	8	NIC	ENSMUSG00000027082.16	novel	3576	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	78.900867794819	29	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTATTTATGATTATT	NA	False	NA	NA	False	NA	NA	NA	84307119	84271066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84273657_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
33740	chr4	+	1619	6	NNC	ENSMUSG00000028797.21	novel	1366	7	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	327.220659494476	722	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTTAGCAAATGTTTTA	3197	False	NA	NA	False	NA	NA	NA	129494493	129502318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129495037_129495662_129495755_129495982_129496055_129500879_129500973_129501248
33741	chr17	-	2367	3	NIC	ENSMUSG00000052146.17	novel	522	5	NA	NA	0	-7	intron_retention	FALSE	canonical	3	4719	junction_2	1070.5	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACATGTCCACTTGT	NA	False	NA	NA	False	NA	NA	NA	27854214	27849404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27851331_27853045_27853450_27854177
33742	chr9	-	2856	6	NNC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	10.7591821250502	2	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	119813733	119800228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806193_119806238_119806312_119813699
33744	chr9	+	2491	11	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	30	1560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	116.052401957047	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGTCTGCTAATGTGT	9244	False	NA	NA	False	NA	NA	NA	63509971	63549170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488_63548967_63549039
33745	chr9	+	2643	12	ISM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	64	18745	32	-18745	5prime_fragment	FALSE	canonical	3	295	junction_2	38.0842910284607	33	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	114230207	114284700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255
33746	chr2	-	2652	12	NNC	ENSMUSG00000039536.17	novel	2976	12	NA	NA	39	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	108.131539118178	2	71	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTAAAAGAAGAGAATA	NA	False	NA	NA	False	NA	NA	NA	166838146	166790122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166791280_166791663_166791750_166792150_166792274_166792922_166793021_166793190_166793260_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
33747	chr7	+	2399	6	NNC	ENSMUSG00000046027.18	novel	2483	6	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	73.5510706924107	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGGTATCTTGAGTTCC	NA	False	NA	NA	False	NA	NA	NA	83281207	83291529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83281348_83281943_83281994_83282337_83282435_83285958_83286077_83286811_83286906_83289629
33749	chr13	-	1841	5	FSM	ENSMUSG00000069206.15	ENSMUST00000223682.2	483	5	-31	-1327	-9	347	multi-exon	FALSE	canonical	3	19	junction_1	43.3618495915476	188	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGAGCTTACATTCCA	9929	False	NA	NA	False	NA	NA	NA	67599752	67590026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67591454_67595482_67595552_67596939_67597036_67597468_67597596_67599630
33750	chr4	+	3003	11	NIC	ENSMUSG00000028542.18	novel	3479	14	NA	NA	389	-1	intron_retention	FALSE	canonical	3	85	junction_1	8.82269800004511	4	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTGATGTGCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	117713129	117726501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_117713229_117713886_117714019_117714399_117714671_117720625_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
33751	chr1	-	2907	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	31	0	-4	0	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	397	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTCTATTTTTTGTAA	9687	False	NA	NA	False	NA	NA	NA	13660103	13634921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
33752	chr3	+	2626	4	NNC	ENSMUSG00000019710.14	novel	1234	5	NA	NA	10	561	intron_retention	FALSE	non_canonical	0	0	junction_1	463.627963877168	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATTTATTTATTATATG	NA	False	NA	NA	False	NA	NA	NA	87826852	87829920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_87827835_87828033_87829356_87829437_87829534_87829694
33753	chr7	-	2144	14	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-43	-8	combination_of_known_junctions	FALSE	canonical	3	19	junction_13	126.954541554455	1062	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTGAGTGGTATGAGAT	NA	False	NA	NA	False	NA	NA	NA	27252484	27231432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244711_27252422
33754	chr14	-	1081	1	Intergenic	novelGene_607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	74192430	74191349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_74191300_74192400
33755	chr15	+	2654	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	101	3	75	-3	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	1	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGTTCTTTTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	59187030	59203038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
33757	chr16	-	5382	18	NNC	ENSMUSG00000049871.15	novel	5403	18	NA	NA	27	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	3.02011709482198	202	63	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAGGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3783477	3762875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3764291_3764579_3765404_3765689_3765774_3766123_3766208_3766767_3766852_3767233_3767318_3770250_3770335_3770726_3770811_3771291_3771376_3771795_3771880_3772419_3772504_3773008_3773093_3775132_3775217_3776793_3776878_3777254_3777339_3780317_3780405_3781416_3783167_3783263
33759	chr7	+	2284	6	NIC	ENSMUSG00000019737.15	novel	1006	7	NA	NA	11	-5	intron_retention	FALSE	canonical	3	156	junction_2	32.932658562588	65	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCAAGAGATGTCTGAGA	NA	False	NA	NA	False	NA	NA	NA	30014251	30018460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30017468_30018097_30018157_30018248
33760	chrX	+	1168	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5605.09585605416	9	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060983_36061460_36061530_36062039
33761	chr12	-	3080	12	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-9270	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	47.7081346910826	11	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTTGGCCATCGTAT	NA	False	NA	NA	False	NA	NA	NA	83653266	83593627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83651973_83652093_83653185
33762	chr4	-	2591	5	FSM	ENSMUSG00000043085.15	ENSMUST00000156246.2	2478	5	-109	-4	-109	0	multi-exon	FALSE	canonical	3	69	junction_2	19.536824204563	29	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	NA	False	NA	NA	NA	141345401	141341543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141342018_141342255_141343933_141344605_141344781_141344950_141345024_141345209
33763	chr7	+	2959	2	FSM	ENSMUSG00000054715.12	ENSMUST00000119989.3	2087	2	-30	-842	1	2	multi-exon	FALSE	canonical	3	22	junction_1	0	127	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTCCAACATCTG	NA	False	NA	NA	False	NA	NA	NA	12631763	12643012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12631871_12640160
33764	chrX	-	1616	3	NIC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	12	0	intron_retention	FALSE	canonical	3	2052	junction_2	57	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	7537599	7534179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7534746_7535165_7535998_7537381
33765	chrX	+	3497	7	Antisense	novelGene_ENSMUSG00000088451.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	106	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGACTACTGCTACCGTTG	NA	False	NA	NA	False	NA	NA	NA	166129333	166165637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_166131999_166133592_166133666_166135127_166135308_166146542_166146665_166148113_166148214_166156998_166157181_166165462
33766	chr3	+	1705	5	NIC	ENSMUSG00000001418.14	novel	4219	6	NA	NA	15	50	intron_retention	FALSE	canonical	3	936	junction_3	74.2596795037522	2200	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAGTCTCTCTTATTTT	4010	False	NA	NA	False	NA	NA	NA	88232344	88235938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88232509_88232983_88233620_88233717_88233937_88235163_88235421_88235509
33767	chr17	-	2975	7	Fusion	ENSMUSG00000073406.11_ENSMUSG00000073403.12	novel	1138	6	NA	NA	561	2201	multi-exon	TRUE	non_canonical	0	0	junction_1	150.04045750693	150	32	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAACAGAATTGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	36456075	36388805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_36388875_36389057_36391216_36391515_36391578_36391869_36392008_36392133_36392410_36394124_36394281_36455959
33768	chr5	+	3083	13	NNC	ENSMUSG00000029179.15	novel	2485	13	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	31.2608869924632	54	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCAGTTGTTATTCC	NA	False	NA	NA	False	NA	NA	NA	52940408	52982007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52978059_52981799
33769	chr4	+	2658	14	NNC	ENSMUSG00000028708.17	novel	2552	14	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	57.857302526313	230	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	115696426	115736445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115696479_115705416_115705560_115713764_115713914_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
33770	chr11	+	1247	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-2699	-17550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2872	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGAAAATCTTCCTATT	6732	False	NA	NA	False	NA	NA	NA	88858378	88864230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88858515_88861243_88861377_88861723_88861855_88863383
33771	chr4	-	2533	5	Fusion	ENSMUSG00000066000.13_ENSMUSG00000062518.8	novel	2594	5	NA	NA	-56	-24	multi-exon	FALSE	canonical	1	2	junction_2	183.856431761307	1	110	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAATAAAGCTGAATGATT	NA	False	NA	NA	False	NA	NA	NA	147787066	147696419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147698506_147699736_147699821_147702873_147702956_147725368_147725463_147786879
33772	chrX	-	2682	13	NNC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-12	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	441.559735483207	1	107	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGTGAATTAAGTGTGC	NA	False	NA	NA	False	NA	NA	NA	93585621	93579089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582895_93583468_93584154_93584856_93584931_93585497
33773	chr2	-	3366	12	NNC	ENSMUSG00000039536.17	novel	3569	12	NA	NA	-65	-125	intron_retention	FALSE	canonical	0	0	junction_1	83.9578800341857	1	135	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGTTCTGAGCGCCACAA	NA	False	NA	NA	False	NA	NA	NA	166838088	166789593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166791280_166791631_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
33774	chr2	-	3664	5	NIC	ENSMUSG00000038914.16	novel	1636	6	NA	NA	-102	-431	combination_of_known_junctions	FALSE	canonical	3	26	junction_3	71.8448849953843	9	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTAGAGCCATCCATAG	NA	False	NA	NA	False	NA	NA	NA	180351894	180327247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_180329591_180330616_180331449_180332314_180332427_180333656_180333842_180351702
33775	chr9	+	2849	8	NNC	ENSMUSG00000032369.14	novel	1471	9	NA	NA	0	4	intron_retention	FALSE	non_canonical	0	0	junction_1	114.607226327709	6	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATGTTACTTTACAA	NA	False	NA	NA	False	NA	NA	NA	92132394	92154034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_92132478_92140096_92140128_92141326_92141408_92145085_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
33776	chr2	+	5178	11	FSM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	41	13	41	-13	multi-exon	FALSE	canonical	3	214	junction_9	12.953763931769	2	202	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTAGACCACAGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	163916098	163997431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888_163960047_163993592
33777	chr11	-	1541	4	NIC	ENSMUSG00000020321.17	novel	549	6	NA	NA	116	-65	intron_retention	FALSE	canonical	3	1374	junction_2	38.9044413345772	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAACTGCCTGACAGCCTC	NA	False	NA	NA	False	NA	NA	NA	21521818	21512960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_21514217_21515823_21515921_21516619_21516719_21521729
33778	chrX	+	2408	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	-42	-2	-14	2	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	2	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTTGCATAGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	133501992	133507805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
33780	chrX	-	4081	19	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	23	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	37.4599786438807	1	207	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACTATTGAAAGCAAAGG	NA	False	NA	NA	False	NA	NA	NA	49724115	49647029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49647262_49651556_49651832_49653689_49653845_49656416_49656571_49658153_49659169_49661891_49662022_49662100_49662229_49666747_49666902_49669457_49669827_49670279_49670434_49673555_49673725_49680801_49681100_49684337_49684360_49687010_49687166_49689620_49689776_49715313_49715387_49716083_49716128_49719767_49719873_49723821
33781	chr6	-	5114	7	FSM	ENSMUSG00000030203.18	ENSMUST00000100857.10	5104	7	-58	48	-58	-48	multi-exon	FALSE	canonical	3	50	junction_6	14.7309198626562	112	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTATGTTAATATGATGAA	NA	False	NA	NA	False	NA	NA	NA	134769646	134692483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_134696015_134697456_134697581_134702798_134702959_134716774_134716939_134735581_134735721_134737808_134738398_134769239
33782	chr11	+	2019	11	NIC	ENSMUSG00000007850.17	novel	2126	13	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	24	junction_10	149.736468503835	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCTGTCTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	50269128	50277353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274597_50275470_50275564_50276603
33783	chr4	+	2012	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	9	400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	672.814920068414	30	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCGTTTATTTCGAGAT	4695	False	NA	NA	False	NA	NA	NA	135583431	135596093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135594436_135595037_135595279
33784	chr4	-	3082	3	FSM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	6	4	-6	-4	multi-exon	FALSE	canonical	3	59	junction_1	6.5	135	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCATCCGAGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	150039494	149980743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_149982799_149990872_149991715_150039309
33785	chr11	+	3152	23	NNC	ENSMUSG00000020527.15	novel	3651	24	NA	NA	624	-508	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	57.0483338643138	1	69	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACGCAAGTGCCAAGCTAT	NA	False	NA	NA	False	NA	NA	NA	84771816	84801440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84772080_84773411_84773554_84776027_84776167_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785475_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794058_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
33786	chr18	-	2763	11	NNC	ENSMUSG00000038425.19	novel	3504	10	NA	NA	98	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	136.080270428891	8	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	NA	False	NA	NA	NA	70663111	70641755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70657801_70657932_70658446_70658600_70659627_70659793_70661772_70661899_70662821
33787	chr14	-	1884	12	Antisense	novelGene_ENSMUSG00000021866.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCTGGATATGAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	25887228	25873132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_25873321_25874365_25874455_25874632_25874727_25875092_25875201_25877076_25877178_25877532_25877606_25877767_25877827_25879502_25879599_25883336_25883435_25884349_25884409_25884564_25884687_25886431
33788	chr3	+	1349	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	101	1824	22	1	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	1784	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTGTAGTTTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	95836658	95852878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
33789	chr9	+	2619	5	ISM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	22915	5608	254	44	3prime_fragment	FALSE	canonical	3	240	junction_4	54.687178570484	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATCGTTATGATAGCC	NA	False	NA	NA	False	NA	NA	NA	30964856	30981573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_30965610_30973336_30973422_30975474_30975639_30977954_30978039_30980040
33790	chr7	-	2763	18	NNC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	-22	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	92.7282743933711	122	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAAATGGCTATGGCT	4677	False	NA	NA	False	NA	NA	NA	30851516	30829564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30851261
33791	chr11	-	924	2	ISM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	1375	-1	261	0	3prime_fragment	FALSE	canonical	3	6581	junction_1	0	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	81	False	NA	NA	False	NA	NA	NA	120237542	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120237360_120237462
33793	chr13	-	1846	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	848	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2690.37972727329	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	6850	False	NA	NA	False	NA	NA	NA	58548231	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543396_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146
33794	chr11	+	1836	12	NIC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	638	0	intron_retention	FALSE	canonical	3	883	junction_11	112.412463648259	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAAGGCTCCTTTCCTTT	2272	False	NA	NA	False	NA	NA	NA	120675978	120679927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679423_120679495
33795	chr11	+	2236	15	ISM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	449	4	37	0	3prime_fragment	FALSE	canonical	3	887	junction_2	62.0699079215344	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGCTGAGTTTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	120564266	120600269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
33796	chr4	-	818	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	51	294	51	10	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCAACAGCAGCATCATTA	NA	False	NA	NA	False	NA	NA	NA	148236465	148230538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
33797	chr7	-	955	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	476	-89	476	89	mono-exon	FALSE	NA	NA	NA	NA	NA	5	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATGGTG	NA	False	NA	NA	False	NA	NA	NA	116424610	116423655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_116423700_116424600
33799	chr9	+	1886	8	NNC	ENSMUSG00000032336.18	novel	2024	8	NA	NA	-4	0	intron_retention	FALSE	canonical	0	0	junction_2	127.205923363558	18	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	12	False	NA	NA	False	NA	NA	NA	58489684	58560161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_58489810_58530969_58531133_58535138_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
33800	chr3	+	4066	1	ISM	ENSMUSG00000074480.5	ENSMUST00000172699.2	5778	2	4934	2	4934	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	151	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCTTGTCTTTCACTGTG	3515	False	NA	NA	False	NA	NA	NA	88444635	88448701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88444600_88448700
33801	chr16	+	2083	5	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	4868	-4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	221.388233653011	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	48109017	48114596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48109569_48109690_48110191_48111376_48111678_48113273_48113470_48114061
33802	chr13	-	1292	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	117	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.502933813367	2	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314220	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311310_34311364_34312390_34313234_34313338_34314159
33803	chr19	+	2426	7	Antisense	novelGene_ENSMUSG00000055044.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1669	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATCCTGGGACGGGCG	NA	False	NA	NA	False	NA	NA	NA	40209687	40259986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40211216_40211494_40211612_40218949_40219103_40231849_40232043_40238061_40238146_40240351_40240504_40259787
33805	chr14	+	2363	9	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	23.1179043167844	27	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCAGTGTACGTGGCC	NA	False	NA	NA	False	NA	NA	NA	70004939	70021857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015161_70015265_70017952_70018023_70019680_70020340_70021141
33806	chr7	-	1651	14	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	26	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	679.25554445625	17	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACCTCTGCTGTGTCCT	9208	False	NA	NA	False	NA	NA	NA	45084021	45071324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072208_45073717_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
33807	chrX	+	3871	21	NNC	ENSMUSG00000036769.15	novel	4002	21	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	19.6455465691337	1	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGAAAAATAAATGATTGT	NA	False	NA	NA	False	NA	NA	NA	23559407	23672228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_23559509_23559663_23559779_23598553_23598575_23616153_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
33808	chr17	+	1167	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	29	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1666.82531778228	7	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3065	False	NA	NA	False	NA	NA	NA	35816943	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817121_35817279_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
33809	chr11	+	2339	13	ISM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	-49	637	-9	-606	5prime_fragment	FALSE	canonical	3	41	junction_1	55.1223386860737	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGACTTAGACTAT	NA	False	NA	NA	False	NA	NA	NA	29476398	29494642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269
33810	chr9	+	1639	12	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	142	-9	combination_of_known_splicesites	FALSE	canonical	2	32	junction_8	485.941158904404	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAATGAGTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	59446964	59472383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59468179_59468361_59469225_59469310_59470149_59470334_59470506_59470598_59471165_59471271_59472103
33811	chr15	-	803	10	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	6904	-9	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	32.3625297733866	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGGCCAACACGCTCT	NA	False	NA	NA	False	NA	NA	NA	58798313	58772874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795677_58795818_58798284
33813	chr11	-	2252	1	NIC	ENSMUSG00000057181.16	novel	4536	10	NA	NA	4322	-1329	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGGTACTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	80254899	80252647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_80252600_80254900
33814	chr9	-	2439	12	Fusion	ENSMUSG00000049734.10_ENSMUSG00000025646.10	novel	2572	13	NA	NA	-2	81	multi-exon	FALSE	canonical	2	5	junction_8	42.5662342417163	1	56	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGAGATGGCCCCCATGG	NA	False	NA	NA	False	NA	NA	NA	108903136	108888733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108898346_108898466_108900785_108900957_108901674_108901806_108902822
33815	chr11	-	1893	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2662.86848342159	1	105	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGTAACTGACCATTGT	NA	False	NA	NA	False	NA	NA	NA	120239321	120236528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238793_120238924_120239250
33816	chr4	-	2385	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	65	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	463.737742926836	1	118	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137523630	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470558_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
33817	chr17	+	869	1	Genic_Genomic	ENSMUSG00000024209.10	novel	NA	NA	NA	NA	12535	2	mono-exon	FALSE	NA	NA	NA	NA	NA	20	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCGCACCCCGAGGTAA	NA	False	NA	NA	False	NA	NA	NA	57195037	57195906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_57195000_57195900
33818	chr7	-	1953	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	169	5	-12	1	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	1	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8853	False	NA	NA	False	NA	NA	NA	141941606	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
33819	chr6	-	1610	1	FSM	ENSMUSG00000096403.3	ENSMUST00000178598.3	843	1	-55	-712	-55	712	mono-exon	FALSE	NA	NA	NA	NA	NA	113	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	-4	True	NA	NA	False	NA	NA	NA	7983438	7981828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7981800_7983400
33820	chr10	-	1926	7	Antisense	novelGene_ENSMUSG00000035754.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCGCCCCTGAATCCCAT	3598	False	NA	NA	False	NA	NA	NA	79803524	79795984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79796205_79796833_79796945_79800757_79800888_79801807_79801954_79802033_79802302_79802391_79803221_79803302
33821	chrX	-	1563	5	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	intron_retention	FALSE	canonical	3	11043	junction_4	2425.28457093183	212	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231978_101232903
33822	chr16	+	1861	10	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	0	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	884.567328146756	4	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	1424	False	NA	NA	False	NA	NA	NA	20354298	20362657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358408_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
33824	chr4	-	5924	42	ISM	ENSMUSG00000028556.16	ENSMUST00000205650.2	6297	48	41855	-403	-11796	0	3prime_fragment	FALSE	canonical	3	95	junction_7	16.5938285439672	80	16	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAATGAGTGGGATTTTA	NA	False	NA	NA	False	NA	NA	NA	98967144	98825091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_98825538_98829130_98829299_98830826_98830934_98832876_98833021_98833364_98833602_98833721_98833812_98834865_98835001_98843552_98843685_98846298_98846443_98847213_98847407_98849573_98849675_98850437_98850597_98854528_98854682_98855459_98855595_98857866_98857964_98859031_98859129_98861363_98861500_98861599_98861783_98864109_98864265_98866100_98866271_98872926_98873067_98875560_98875732_98877239_98877354_98877453_98877595_98879600_98879697_98880605_98880696_98889269_98889440_98891988_98892154_98896168_98896401_98897489_98897577_98903931_98904034_98904863_98905003_98908257_98908329_98911578_98911697_98943558_98943722_98945037_98945132_98949415_98949559_98952186_98952353_98953614_98953696_98958414_98958565_98960641_98960709_98967102
33827	chr14	-	1599	4	Antisense	novelGene_ENSMUSG00000022010.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTAGAGGAGGCCGCCCG	NA	False	NA	NA	False	NA	NA	NA	76745163	76741958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76742280_76742686_76742737_76743855_76744626_76744705
33828	chr7	+	2623	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	-61	0	-61	0	multi-exon	FALSE	canonical	3	128	junction_2	8.2192186706253	341	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTTGTGGTTTCTAA	7081	False	NA	NA	False	NA	NA	NA	128125278	128148705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
33829	chr12	+	3101	11	FSM	ENSMUSG00000072946.13	ENSMUST00000123693.2	1386	11	-13	-1702	0	-28	multi-exon	FALSE	canonical	3	9	junction_3	94.1679881913169	277	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACTGGAGATGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	84332173	84362578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84343001_84343131_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
33830	chr1	-	2448	3	NNC	ENSMUSG00000026466.17	novel	1952	7	NA	NA	-17050	-6092	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	67	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAACCGACTACCAGCTACG	NA	False	NA	NA	False	NA	NA	NA	155929276	155912010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_155912161_155916819_155916879_155927037
33831	chr3	-	1823	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	6	44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	818.62506680409	12	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTGGGTCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	108352479	108333883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335639_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
33833	chr16	-	4349	1	Antisense	novelGene_ENSMUSG00000014303.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGACAAGGTTTTACTATG	NA	False	NA	NA	False	NA	NA	NA	4440692	4436343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_4436300_4440700
33834	chr6	+	3169	23	NNC	ENSMUSG00000030088.16	novel	4175	23	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	64.8303730725597	1	99	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCTACACTTTGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	90527794	90576144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90527953_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541330_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575433_90575871
33835	chr1	-	2301	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	27	5874	-9	-29	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	106	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTTAAAGAAAGGACTCT	NA	False	NA	NA	False	NA	NA	NA	86287095	86278314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
33836	chr10	+	3485	6	FSM	ENSMUSG00000037762.7	ENSMUST00000046807.7	3756	6	205	66	205	-66	multi-exon	FALSE	canonical	3	72	junction_1	10.3846039885977	56	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTAGAGCTATGATTT	NA	False	NA	NA	False	NA	NA	NA	70081134	70121732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_70081209_70091789_70092023_70102921_70103066_70110755_70110852_70118118_70119028_70119703
33838	chr16	-	1493	11	NIC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	1	16	junction_7	538.753153123023	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCTGAATTTCTCCGA	9186	False	NA	NA	False	NA	NA	NA	91525505	91486209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91509082_91509156_91511636_91511715_91514291_91514364_91525445
33840	chr7	-	3692	11	NIC	ENSMUSG00000044465.20	novel	10853	12	NA	NA	-3	-11	intron_retention	FALSE	canonical	3	88	junction_4	98.3562911053482	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAAATCTCTATTCTGTG	NA	False	NA	NA	False	NA	NA	NA	105049196	105027829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105039100_105039227_105039560_105049090
33841	chr4	-	2617	3	FSM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	10	-1714	10	1714	multi-exon	FALSE	canonical	3	233	junction_2	115.5	1185	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTGATGGTCCTTCATG	NA	False	NA	NA	False	NA	NA	NA	101750976	101745502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_101747741_101747885_101748198_101750909
33842	chr2	+	3429	20	NNC	ENSMUSG00000035437.16	novel	4967	26	NA	NA	3	3376	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_19	62.7881722192733	8	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGGCCTTGGCTACTAA	1542	False	NA	NA	False	NA	NA	NA	37333293	37438350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939_37399091_37422527_37422642_37427313_37427389_37430428_37430555_37431044_37431189_37432648_37432691_37433114_37433244_37437555
33844	chr8	+	2850	6	NNC	ENSMUSG00000031641.15	novel	4309	5	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	68.7877896141459	504	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCCTTTATCTCTGGCC	2564	False	NA	NA	False	NA	NA	NA	61940765	61959717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066_61957265_61958714
33845	chr7	-	3875	15	NNC	ENSMUSG00000025507.14	novel	2900	15	NA	NA	68	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	18.9241234666124	1	127	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTGTGTGAGACAGA	NA	False	NA	NA	False	NA	NA	NA	141023837	141018046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021313_141021387_141021443_141021524_141021735_141022063_141022478_141022880
33846	chrX	+	3953	7	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	91	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGTGGCCCCCTTAGTCC	NA	False	NA	NA	False	NA	NA	NA	49698673	49724167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49701727_49704236_49704424_49706774_49706862_49715316_49715387_49716083_49716187_49719767_49719877_49723823
33847	chr4	-	2051	10	NNC	ENSMUSG00000032897.18	novel	2006	10	NA	NA	480	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	192.356022796722	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACTTGAGAATCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	120682401	120614643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120615494_120616528_120616589_120618820_120618933_120622410_120622558_120625927_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682083
33848	chr8	-	2997	13	NNC	ENSMUSG00000036550.17	novel	7479	48	NA	NA	0	1258	intron_retention	FALSE	non_canonical	0	0	junction_8	347.187709395876	1	80	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAGGACAGGAATTAGAAA	NA	False	NA	NA	False	NA	NA	NA	96534061	96487321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96488071_96489617_96489859_96491084_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500119_96500207_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
33850	chr18	-	2780	10	FSM	ENSMUSG00000024588.11	ENSMUST00000025484.9	2059	10	-5	-716	5	712	multi-exon	FALSE	canonical	3	22	junction_9	95.9785212597583	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGAACATTTCTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	64622139	64589619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64621971
33851	chr17	+	3535	9	Antisense	novelGene_ENSMUSG00000023940.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	157	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACCGCCGCCACATTCGA	NA	False	NA	NA	False	NA	NA	NA	53981828	53996295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_53983742_53983934_53984122_53985934_53986730_53988472_53988516_53990580_53990666_53994119_53994304_53994733_53994885_53995017_53995151_53996251
33853	chr14	+	1515	3	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1127.5	23	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6575	False	NA	NA	False	NA	NA	NA	76741953	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742742_76744069
33854	chr2	+	2758	13	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	2	-24	intron_retention	FALSE	canonical	3	523	junction_6	45.4962605300944	1	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTACACAAGCGTGGGA	NA	False	NA	NA	False	NA	NA	NA	174257645	174269271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268423_174268609_174268740_174268823
33855	chr7	+	1900	14	ISM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	3526	6	-176	-6	3prime_fragment	FALSE	canonical	3	134	junction_4	12.2624167236856	550	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAGTCTGGAGAGTTCA	NA	False	NA	NA	False	NA	NA	NA	44401362	44426933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
33857	chr2	+	2625	3	NNC	ENSMUSG00000048550.18	novel	3899	3	NA	NA	3734	456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCATTTGCTTTATTTTAT	8581	False	NA	NA	False	NA	NA	NA	21214331	21218546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_21214454_21214695_21214853_21216200
33858	chr1	-	2838	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	NA	False	NA	NA	NA	51517558	51508646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
33859	chr2	+	2268	10	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-37	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	399.431818684713	1	85	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTGTTCTAACTTGTGT	8626	False	NA	NA	False	NA	NA	NA	72306559	72317223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313794_72313878_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
33860	chr3	+	1628	9	ISM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	737	1571	592	662	3prime_fragment	FALSE	canonical	3	910	junction_3	53.7690373263275	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	105867421	105875505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
33861	chr9	+	976	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6747.89979723094	46	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64082875_64084624_64084760_64085002_64085087_64085178_64085300_64085504
33862	chr8	+	727	5	NIC	ENSMUSG00000015013.10	novel	1659	5	NA	NA	9	-1071	combination_of_known_junctions	FALSE	canonical	2	5	junction_3	280.449973257264	130	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACGTTGTCCTGTGTC	5531	False	NA	NA	False	NA	NA	NA	123338393	123342328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123338433_123339804_123339978_123340659_123340748_123340898_123341127_123342129
33863	chr18	+	2342	7	NNC	ENSMUSG00000060450.15	novel	2886	8	NA	NA	-2	52	intron_retention	FALSE	non_canonical	0	0	junction_2	92.7405281177305	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTGTGAATAGTTAAAAAG	989	False	NA	NA	False	NA	NA	NA	38429750	38449919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_38429852_38432806_38433642_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
33864	chr17	-	2024	12	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	689.992789517961	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906492	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899380_45900299_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
33865	chr1	+	1629	13	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	10	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	547.020179142314	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724189	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724264_59735199_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
33866	chr19	+	1675	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-26	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2845.56922639781	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTACTGTTTGTCTTG	4149	False	NA	NA	False	NA	NA	NA	41900450	41907096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904319_41905089_41905263_41906044
33867	chr2	-	3938	8	ISM	ENSMUSG00000017929.14	ENSMUST00000109221.9	4210	9	35963	5	635	-5	3prime_fragment	FALSE	canonical	3	218	junction_3	14.9897924452282	273	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAACCTTGGTAGTCGTCT	NA	False	NA	NA	False	NA	NA	NA	167155140	167140368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_167143404_167143929_167144032_167146915_167147039_167147579_167147768_167148510_167148628_167149463_167149589_167151142_167151257_167155006
33868	chr10	+	1499	3	ISM	ENSMUSG00000025395.15	ENSMUST00000026461.8	1583	13	5250	6376	466	1540	internal_fragment	FALSE	canonical	2	393	junction_2	82	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTCATCTCAGGTATCCA	6234	False	NA	NA	False	NA	NA	NA	127856290	127859530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127857601_127858731_127858842_127859451
33869	chr4	-	2745	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	-1300	0	1300	multi-exon	FALSE	canonical	3	55	junction_1	0	180	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGGGCTGTGAGCCTCG	4504	False	NA	NA	False	NA	NA	NA	127247874	127243578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127246275_127247825
33870	chr18	+	3614	17	NNC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	25.7314860627986	10	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTTTATGTTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	74401245	74414303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74411749_74412986_74414072
33872	chr8	-	1419	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	-65	0	-10	0	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	42	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	23083839	23067101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
33876	chr7	+	2008	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	-460	-44	-460	44	multi-exon	FALSE	canonical	3	1088	junction_4	64.1950153828161	3946	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTAAGATATTTAAATTGT	NA	False	NA	NA	False	NA	NA	NA	97345380	97368130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
33877	chr11	-	2413	4	FSM	ENSMUSG00000034566.11	ENSMUST00000137563.8	510	4	-1910	7	-15	-7	multi-exon	FALSE	canonical	3	2984	junction_1	272.998575494859	57	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATCGTCTCTGAGTA	NA	False	NA	NA	False	NA	NA	NA	115310758	115306521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664
33878	chr11	-	1599	11	Antisense	novelGene_ENSMUSG00000098296.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCAGGTTGGAGGAAAGC	5354	False	NA	NA	False	NA	NA	NA	4844055	4823997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_4824103_4833366_4833496_4833725_4833770_4834019_4834115_4838877_4838949_4839094_4839236_4839530_4839562_4839888_4839985_4841400_4841485_4843117_4843456_4843590
33879	chr6	+	4087	28	FSM	ENSMUSG00000031865.17	ENSMUST00000077407.12	4118	28	32	-1	1	0	multi-exon	TRUE	canonical	3	372	junction_1	39.6793042772762	146	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTCTGTGTGGCTCTG	525	False	NA	NA	False	NA	NA	NA	83142933	83177099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83142977_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
33880	chr7	-	2416	17	NIC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	-13	-3	intron_retention	FALSE	canonical	3	112	junction_11	36.9805164072921	546	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAAAGCACTGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	30364371	30353143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357344_30357927_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
33881	chr1	+	4524	7	FSM	ENSMUSG00000026307.13	ENSMUST00000153621.8	2301	7	-9	-2214	1	2214	multi-exon	FALSE	canonical	3	66	junction_4	6.51707159867238	9	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGCAAACAAAGAACCCT	NA	False	NA	NA	False	NA	NA	NA	91226082	91241266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_91226171_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518
33882	chr2	-	1449	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-10	-1032	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5461.33272298174	6	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTATAACAGTAATTCTT	3749	False	NA	NA	False	NA	NA	NA	154734738	154714369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154732517_154732582_154734609
33884	chr1	+	2055	13	NNC	ENSMUSG00000053286.12	novel	1567	7	NA	NA	10596	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57.2903787734031	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	NA	False	NA	NA	NA	151315052	151333912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_151315145_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
33885	chr18	+	2296	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26374	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	471.258392203494	1	80	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAATAGTTAACTTTTCT	6711	False	NA	NA	False	NA	NA	NA	77126529	77240802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185424_77193500_77193627_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
33886	chr11	-	2030	11	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	6360	14	combination_of_known_splicesites	FALSE	canonical	2	7	junction_9	49.415483403484	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTTTCCTTGTGTTCA	6148	False	NA	NA	False	NA	NA	NA	106078002	106054141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106075387_106075446_106077926
33887	chr7	+	2592	7	NNC	ENSMUSG00000045411.17	novel	676	7	NA	NA	8	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	353.556061875467	1	101	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTAGGGTGTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	43896662	43901735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036_43900317_43900417
33888	chr6	+	2195	13	NNC	ENSMUSG00000001424.15	novel	718	5	NA	NA	-86	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	201.851619733132	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTACTGTCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	28704821	28888817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28705109_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
33889	chr18	+	5387	23	NNC	ENSMUSG00000024620.12	novel	5407	23	NA	NA	17	0	at_least_one_novel_splicesite	TRUE	canonical	1	5	junction_6	4.07370118225601	45	13	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCGATTTCTCAGGGTTG	NA	False	NA	NA	False	NA	NA	NA	61178238	61218133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61178645_61193215_61193262_61194276_61194598_61196938_61197206_61197868_61197997_61198076_61198252_61198786_61198980_61199569_61199686_61201167_61201292_61201816_61202029_61204732_61204828_61205701_61205835_61206312_61206418_61206699_61206811_61209590_61209751_61210689_61210851_61211600_61211720_61211949_61212073_61212695_61212808_61213367_61213468_61214026_61214133_61214888_61215122_61216292
33890	chr10	-	1482	3	NIC	ENSMUSG00000061983.8	novel	494	5	NA	NA	73	0	intron_retention	FALSE	canonical	3	3724	junction_2	502.5	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	23662914	23661095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661576_23661799_23662779_23662891
33891	chr9	-	3899	16	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-10	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	372.885827030205	1	210	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATTTATTCAAAATAAACT	NA	False	NA	NA	False	NA	NA	NA	108526527	108480177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108482346_108482532_108482672_108484486_108484556_108485107_108485248_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493880_108494028_108494570_108494635_108497257_108497326_108521200_108521568_108522131_108522194_108526427
33892	chr13	-	1252	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-504	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	206.114046100696	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCTAAAATCACATAAACCT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311851_34312077_34312515_34312846_34312966_34313228_34313256_34314274
33893	chr15	-	1289	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	57	5	4	-1	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	3	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3575	False	NA	NA	False	NA	NA	NA	79967550	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
33896	chr7	+	3864	9	NIC	ENSMUSG00000030714.15	novel	1312	10	NA	NA	-14	-3	intron_retention	FALSE	canonical	3	419	junction_2	32.6879182573623	6	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCATGTCTCCTGGGCCT	190	False	NA	NA	False	NA	NA	NA	126248559	126271948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126248650_126260223_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
33897	chr10	+	2117	11	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	0	-30	intron_retention	FALSE	canonical	0	0	junction_2	666.66244081994	1	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCTTTCCATTAAAGCAG	1621	False	NA	NA	False	NA	NA	NA	79690498	79700163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692361_79694585_79694659_79695510_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
33898	chr17	+	4091	29	NNC	ENSMUSG00000007029.17	novel	4137	30	NA	NA	50	4	intron_retention	FALSE	non_canonical	0	0	junction_11	494.060792136485	2	123	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGCTCTTGTCTGTGTGGT	9588	False	NA	NA	False	NA	NA	NA	35220076	35235302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230391_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232040_35232124_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
33900	chr3	-	1735	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	11	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	1089.6764703342	2	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTCCCCAGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	108352503	108333926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334624_108335469_108335648_108335921_108336036_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
33902	chr1	+	2373	9	NNC	ENSMUSG00000073652.11	novel	826	3	NA	NA	-12476	-4073	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGAGCCCCAAGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	71679519	71692331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_71680488_71681110_71681291_71682118_71682310_71684704_71684862_71687167_71687306_71688352_71688485_71689720_71689861_71690682_71690809_71691990
33904	chr17	-	2568	15	NIC	ENSMUSG00000005823.10	novel	2405	17	NA	NA	0	25	intron_retention	FALSE	canonical	3	119	junction_10	27.0419175748032	187	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGCTGTGCGGAGCCCT	NA	False	NA	NA	False	NA	NA	NA	57554663	57541918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
33905	chr6	+	2894	2	FSM	ENSMUSG00000073018.7	ENSMUST00000114185.4	2874	2	-20	0	-20	0	multi-exon	FALSE	canonical	3	49	junction_1	0	115	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTGTGATGTGATT	NA	False	NA	NA	False	NA	NA	NA	71270728	71279864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_71270843_71277084
33906	chr7	-	3800	4	NNC	ENSMUSG00000050855.17	novel	3712	4	NA	NA	5	-6	intron_retention	FALSE	canonical	3	27	junction_3	11.3431330181157	96	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATATAAATTGGTGTGT	3428	False	NA	NA	False	NA	NA	NA	29553089	29542680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29545674_29545893_29546386_29550366_29550443_29552850
33907	chr14	-	4120	22	NIC	ENSMUSG00000021830.15	novel	4069	24	NA	NA	-3	-194	intron_retention	TRUE	canonical	2	4	junction_20	9.63859400177566	49	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACAATGTATGTAAATCT	NA	False	NA	NA	False	NA	NA	NA	45456862	45372098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_45373431_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45455227_45455500_45456452_45456507_45456673
33908	chr17	-	2290	4	FSM	ENSMUSG00000052146.17	ENSMUST00000145226.9	753	4	-10	-1527	1	-1	multi-exon	FALSE	canonical	3	4719	junction_3	899.266738329994	29	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTCCACTTGTGTATGT	NA	False	NA	NA	False	NA	NA	NA	27854213	27849398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27851331_27853045_27853218_27853299_27853450_27854177
33909	chrX	+	1795	4	NNC	ENSMUSG00000006373.11	novel	1857	3	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	236.31805310264	7	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1673	False	NA	NA	False	NA	NA	NA	35861863	35869732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_35861955_35862011_35862268_35865773_35865930_35868440
33910	chr13	-	988	7	Antisense	novelGene_ENSMUSG00000077360.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCTAATGATATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	49868629	49858335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_49858399_49859260_49859359_49860151_49860288_49861886_49861953_49863051_49863249_49865224_49865310_49868286
33911	chr5	+	4259	20	NNC	ENSMUSG00000029647.16	novel	4152	18	NA	NA	-31	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_13	57.4679002294908	92	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACTTGTATTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	147387518	147485300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_147387585_147390061_147390129_147391927_147391999_147424920_147425069_147439894_147440013_147456314_147456563_147458639_147458745_147459985_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473271_147473351_147474013_147474085_147476052_147476183_147476551_147476617_147479879_147480019_147482415_147482546_147483174
33912	chr8	+	1967	17	NNC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	209.386221714204	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	NA	False	NA	NA	NA	85415911	85426415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85415979_85416336_85416486_85417145_85417202_85417439_85417577_85417880_85418069_85421856_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
33913	chr4	-	3073	14	NNC	ENSMUSG00000028453.11	novel	2771	14	NA	NA	-50	0	intron_retention	FALSE	canonical	2	2	junction_6	44.5638960191136	120	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	43010556	43002342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005206_43005375_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001
33914	chr17	-	2028	17	NNC	ENSMUSG00000024056.11	novel	2201	17	NA	NA	56	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	94.7805854328828	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCCCCTCCCATTTC	NA	False	NA	NA	False	NA	NA	NA	71833729	71803096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828099_71830576_71830655_71832627_71832738_71833705
33917	chr4	+	2300	1	Antisense	novelGene_ENSMUSG00000039740.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGTCAAAGCTGCCGATA	NA	False	NA	NA	False	NA	NA	NA	47469875	47472175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_47469900_47472200
33920	chr13	-	3294	11	NNC	ENSMUSG00000032745.19	novel	1940	11	NA	NA	181	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	582.775119578727	2	163	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGAATATTGTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	111626381	111562221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111589516_111589780_111589906_111590031_111603384_111603494_111623952_111624907_111626286
33921	chr11	-	1023	4	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	35972	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	749.869914644459	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTGACTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	75197042	75191173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75191726_75191954_75192230_75193493_75193581_75196933
33922	chr9	-	3005	21	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	83.5417709891286	1	113	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAACTTGTGTGGTGGCC	NA	False	NA	NA	False	NA	NA	NA	61854056	61824564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844359_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
33924	chr16	-	1301	2	ISM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	4857	1373	4836	-1373	3prime_fragment	FALSE	canonical	3	1336	junction_1	0	29	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTCTGACTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	38268208	38265764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_38266467_38267609
33925	chr12	+	4664	7	FSM	ENSMUSG00000020657.17	ENSMUST00000020986.15	4698	7	34	0	-12	0	multi-exon	FALSE	canonical	3	25	junction_5	5.84284938098603	62	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTCTGCTGGCTGCAT	NA	False	NA	NA	False	NA	NA	NA	4132616	4160606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_4132874_4135953_4136037_4139133_4139204_4146212_4146378_4147223_4147347_4153053_4153215_4156801
33926	chr6	-	2422	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-114	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1581.56912877399	1	116	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAACTCTGGATTTGAA	8371	False	NA	NA	False	NA	NA	NA	145022024	144944885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144945256_144945499_144946031_144950076_144950152_144953341_144953477_144955771_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
33927	chr3	+	696	1	Antisense	novelGene_ENSMUSG00000047676.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTCCTGGAGGAGATGA	NA	False	NA	NA	False	NA	NA	NA	149778237	149778933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_149778200_149778900
33928	chr7	+	1982	10	NNC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	1	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	521.77569562333	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTGACCATGGCCCTA	NA	False	NA	NA	False	NA	NA	NA	16515293	16532163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_16515600_16516316_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
33929	chr17	-	2002	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	383	2	-39	0	multi-exon	FALSE	canonical	3	126	junction_3	5.45527267879434	1385	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCGCCTGGCATCTTTA	NA	False	NA	NA	False	NA	NA	NA	27247600	27238785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
33931	chr18	-	2322	9	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	112.236357745608	204	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	NA	False	NA	NA	NA	70663331	70641755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70663258
33933	chr10	+	778	4	NNC	ENSMUSG00000003072.16	novel	931	4	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1144.58881505786	14	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGAGTGTTCTGTTTCT	4508	False	NA	NA	False	NA	NA	NA	79978211	79981644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79978441_79979665_79979789_79981103_79981142_79981256
33934	chr4	-	2577	7	NIC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	846	-17	intron_retention	FALSE	canonical	3	1348	junction_1	42.4214961232314	4	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCCTTGTCAGGCATT	7272	False	NA	NA	False	NA	NA	NA	129493546	129485769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129485928_129486059_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747
33935	chr19	-	3175	21	FSM	ENSMUSG00000024858.15	ENSMUST00000088737.11	3376	21	196	5	4	-5	multi-exon	FALSE	canonical	3	202	junction_18	28.8679753360017	255	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGACTCCTCGCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	4356054	4336034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4337293_4337380_4337495_4337585_4337723_4337850_4338014_4338439_4338536_4338619_4338687_4339340_4339442_4339700_4339768_4339925_4340034_4340101_4340197_4340422_4340554_4340631_4340711_4340799_4340900_4341266_4341359_4341617_4341670_4342197_4342260_4342389_4342465_4342571_4342674_4342794_4342869_4344877_4344955_4355929
33936	chr10	-	2248	12	Intergenic	novelGene_3442	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGCTGGGCCTGCCGGGA	NA	False	NA	NA	False	NA	NA	NA	59699847	59538388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_59538508_59563776_59563941_59568801_59568980_59576481_59576645_59586325_59586368_59603957_59604075_59623762_59623844_59624698_59624897_59663008_59663147_59675494_59675604_59697382_59697473_59698998
33937	chr1	-	1837	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-13	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2248.01552154872	1	57	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTCTGTTGCCAGACTT	NA	False	NA	NA	False	NA	NA	NA	86287099	86278226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283847_86284892_86285175_86285828_86285946_86286927
33938	chr8	-	1535	12	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACACCCCACACTATGCA	NA	False	NA	NA	False	NA	NA	NA	107649693	107630943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107631077_107632756_107632927_107633019_107633114_107634836_107634932_107637572_107637637_107638855_107638981_107639979_107640135_107642785_107642893_107644211_107644307_107645248_107645437_107648802_107648913_107649494
33939	chr18	-	3181	10	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248914	-1442	-3830	-4	3prime_fragment	FALSE	canonical	2	4	junction_2	10.3064165558269	96	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTTTAAAAAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	25638126	25610692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_25612769_25619850_25620023_25624197_25624282_25629278_25629360_25630521_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
33940	chr2	-	3678	13	FSM	ENSMUSG00000026918.17	ENSMUST00000113941.9	5289	13	23	1588	3	655	multi-exon	FALSE	canonical	2	24	junction_5	87.0507514805779	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCTGTTGGGTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	27365662	27337199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27343411_27343463_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
33941	chr2	+	2399	19	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	2	1772	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	251.526426464252	1	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCCTTTGCAACATTTTT	7224	False	NA	NA	False	NA	NA	NA	23046531	23087094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083070_23083252_23084528_23084656_23084746_23084813_23085333_23085421_23086899
33943	chr7	+	1939	12	NNC	ENSMUSG00000025487.16	novel	1989	13	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	376.276076771316	44	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	140461848	140478555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469409_140470428_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
33946	chr1	+	2854	14	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-5	-6	intron_retention	FALSE	canonical	3	1434	junction_3	214.821984924962	2	86	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGGCAGTTTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	59724156	59750663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
33947	chr12	+	3752	6	NNC	ENSMUSG00000021286.9	novel	742	5	NA	NA	16	12	intron_retention	TRUE	non_canonical	0	0	junction_5	306.258452944568	5	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAAAACTTATTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	111780619	111794797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111793570_111793652
33948	chr18	-	3635	12	Antisense	novelGene_ENSMUSG00000025423.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	80	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTCTTCTGCTTGAGC	NA	False	NA	NA	False	NA	NA	NA	77234482	77126314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77126674_77184940_77185418_77193498_77193577_77207596_77207654_77207744_77207843_77214552_77214686_77216649_77216758_77217745_77217818_77220785_77220946_77221627_77221764_77223475_77223647_77232696
33949	chr15	-	1834	7	NIC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	-18	-3	intron_retention	FALSE	canonical	3	940	junction_2	83.8126216959925	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTGTGGTGTTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	81844983	81835311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81835814_81836124_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
33950	chr15	-	1922	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	15	2	combination_of_known_splicesites	FALSE	canonical	2	29	junction_8	84.7758072801433	15	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGGTACTATGACCTGTG	1260	False	NA	NA	False	NA	NA	NA	82223111	82213730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222952
33951	chr15	-	4320	32	FSM	ENSMUSG00000022607.19	ENSMUST00000110036.11	4417	32	97	0	-10	0	multi-exon	FALSE	canonical	3	91	junction_30	29.7827373894676	155	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCATTGCCTTTTTTTT	1774	False	NA	NA	False	NA	NA	NA	73294943	73076950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73266496_73266594_73294857
33952	chr2	+	2579	21	NNC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	-20	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.377380901236	8	92	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTCTTGAACAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	166857209	166876855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166857326_166859672_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862551_166862635_166863967_166864077_166866303_166866478_166868039_166868193_166869588_166869689_166869788_166869935_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
33953	chr3	-	1894	7	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	3	1	intron_retention	FALSE	canonical	3	120	junction_5	243.390404266251	179	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCATTTGATCTATAAG	NA	False	NA	NA	False	NA	NA	NA	10416370	10405011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411298_10412224_10412472_10413569_10413613_10416301
33954	chr17	-	2297	5	Antisense	novelGene_ENSMUSG00000003198.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	111	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTCACTCCAGGACCC	NA	False	NA	NA	False	NA	NA	NA	56205932	56199403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56199633_56199757_56199861_56202820_56202945_56203137_56203200_56204153
33955	chr14	-	2117	19	NNC	ENSMUSG00000022040.9	novel	2035	19	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_18	48.1696141607452	971	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTTGTGTTCTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	66361947	66321821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361703
33957	chr5	-	2435	14	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	71	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	414.838458614389	1	91	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	NA	False	NA	NA	NA	24782394	24770342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773793_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
33958	chr11	+	1540	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	26	1282	5	57	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAAGCTGTGCTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	80319476	80362792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
33959	chr8	-	1590	3	NNC	ENSMUSG00000037070.11	novel	1622	2	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTTCTGTCTTGATTTC	NA	False	NA	NA	False	NA	NA	NA	79235528	79231900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_79232866_79232922_79233447_79235427
33960	chr17	+	2845	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	-158	-3	-158	3	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	1	161	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCTTCTAAGGGATGCA	NA	False	NA	NA	False	NA	NA	NA	17341518	17367096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
33961	chr11	+	1755	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-267	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4060.57933797629	1	78	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642894_75646417_75646507_75647642_75647850_75650117_75650255_75655445
33962	chr15	-	1811	7	NNC	ENSMUSG00000041815.15	novel	3157	8	NA	NA	55	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.973692036492	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCTAACTTTGAGCTATA	2998	False	NA	NA	False	NA	NA	NA	83020057	83010184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83010890_83012168_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494
33963	chr11	-	1653	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3212.08297526698	1	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120238919	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238176_120238461_120238655_120238780
33964	chr1	+	1669	13	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	739.192516458932	3	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGTTTTGTGATCTCTT	NA	False	NA	NA	False	NA	NA	NA	59724141	59750668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729743_59737549_59737619_59740043_59740109_59741971_59742011_59743232_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
33965	chr11	+	2533	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	2	12	2	-12	multi-exon	FALSE	canonical	3	262	junction_1	137	698	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAACTCAATTATCCAG	NA	False	NA	NA	False	NA	NA	NA	46327802	46333536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_46328019_46330632_46330803_46331389
33966	chr11	+	1996	2	ISM	ENSMUSG00000010362.10	ENSMUST00000155222.2	463	3	-548	-111	-548	-1	intron_retention	FALSE	canonical	3	1175	junction_1	0	5	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACTACGTAACAAAGGTG	NA	False	NA	NA	False	NA	NA	NA	101524014	101526897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101524727_101525613
33967	chr15	+	1787	12	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	98	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	371.622842664552	3	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGCAAAGACTGGGACCCT	NA	False	NA	NA	False	NA	NA	NA	85220543	85347405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220753_85243669_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
33968	chr4	-	2011	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-566	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	343.547920316393	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	9491	False	NA	NA	False	NA	NA	NA	129229729	129203309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216250_129216488_129216663_129222380_129222527_129228289_129228438_129229543
33969	chr5	+	3825	9	FSM	ENSMUSG00000029120.11	ENSMUST00000031003.11	4088	9	263	0	113	0	multi-exon	TRUE	canonical	3	174	junction_3	14.0890028036054	184	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGCTCGCAAGGCTGC	NA	False	NA	NA	False	NA	NA	NA	37026119	37112422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_37026235_37080311_37080410_37083628_37083795_37084874_37084988_37088579_37088758_37097440_37097606_37104411_37104582_37106896_37106989_37109694
33970	chr7	+	2027	7	NIC	ENSMUSG00000030512.14	novel	955	8	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	2772	junction_5	192.939253537365	315	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGTGTGCTGTGTATCT	NA	False	NA	NA	False	NA	NA	NA	65710286	65724332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65720414_65720979_65721074_65724069
33971	chr15	+	2234	10	NIC	ENSMUSG00000022550.19	novel	2262	12	NA	NA	3234	1	intron_retention	FALSE	canonical	3	116	junction_6	20.1769946005621	2	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAATCGTTTTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	76471957	76480010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478648_76478728_76479139_76479213_76479467_76479536_76479654_76479738
33972	chr13	-	2619	9	NNC	ENSMUSG00000035834.12	novel	3054	8	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.1944009056	1	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGATTTGCAGTGAACAT	NA	False	NA	NA	False	NA	NA	NA	81859066	81821960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81823410_81823783_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847858_81848013_81858976
33973	chr12	+	2416	7	NIC	ENSMUSG00000021243.15	novel	749	8	NA	NA	38	-2	intron_retention	FALSE	canonical	3	1900	junction_1	163.582547968908	26	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATGTTGTCTCAATTCT	4667	False	NA	NA	False	NA	NA	NA	85017708	85030075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_85017740_85017988_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
33974	chr12	+	1421	9	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-41	-1689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1493.08417692205	3	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908817	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564_78931807_78931876
33975	chr6	+	3163	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	21	-1497	-3	1497	multi-exon	FALSE	canonical	3	170	junction_2	14.5	507	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGACAACTTCTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	71248681	71263800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_71248825_71259134_71259302_71260947
33976	chr8	-	2378	10	Antisense	novelGene_ENSMUSG00000038482.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	122	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTATCTGGTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13428448	13389668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_13389740_13407042_13407108_13415086_13415195_13419457_13419574_13420475_13420647_13420878_13421023_13421354_13421487_13422917_13423100_13423841_13423921_13427138
33977	chr5	+	2098	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	4	85	4	-85	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	1	61	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTACGTGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	33815933	33829457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
33978	chr11	-	2095	7	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	290	-10	intron_retention	FALSE	canonical	2	3	junction_2	103.70417327936	58	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCATAATATCTGCGGTG	NA	False	NA	NA	False	NA	NA	NA	77784632	77771450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77772081_77772326_77772460_77772943_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
33980	chr1	+	2161	11	NIC	ENSMUSG00000025962.16	novel	4486	12	NA	NA	8	-3	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	129.292536520868	7	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTCGTGGATCAGCTGG	NA	False	NA	NA	False	NA	NA	NA	63769780	63791621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
33981	chr12	-	4106	31	NIC	ENSMUSG00000034761.16	novel	4498	32	NA	NA	179	-8	combination_of_known_splicesites	FALSE	canonical	1	42	junction_9	20.3279774366922	101	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACGCAAATGAACTATAAAG	NA	False	NA	NA	False	NA	NA	NA	69939604	69850542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_69852126_69853971_69854028_69855985_69856057_69858047_69858141_69859909_69859979_69862528_69862707_69863063_69863168_69864795_69864855_69865157_69865273_69869576_69869638_69870195_69870276_69871353_69871439_69872515_69872558_69873064_69873163_69874135_69874293_69874797_69874841_69877202_69877271_69878325_69878385_69884768_69884848_69888693_69888811_69889661_69889744_69891129_69891193_69892454_69892587_69896320_69896394_69897599_69897643_69897727_69897776_69899472_69899529_69903054_69903120_69903546_69903638_69921050_69921109_69939426
33982	chr7	+	3035	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	-27	0	-1	0	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	1	161	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79944225	79966002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
33983	chr4	+	2626	20	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	1627	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	67.4640768264849	3	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAACTATCAGTTTTATG	5160	False	NA	NA	False	NA	NA	NA	108478763	108491308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108478792_108480647_108480793_108481640_108481745_108482042_108482197_108482497_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108485357_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
33985	chrUn_JH584304v1	+	4002	27	Intergenic	novelGene_4586	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_22	16.2326375155136	1	95	10	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCTCCTACTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	4975	52729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_5089_6915_7011_14083_14202_19242_19346_20219_20377_24796_24959_26983_27055_28052_28146_29421_29520_31432_31500_38114_38246_39081_39164_39432_39612_40110_40187_41049_41127_41974_42078_44213_44311_47516_47678_47923_47999_48581_48657_48768_48946_49051_49988_50092_50277_51408_51545_51650_51730_52288_52401_52484
33986	chr17	+	1820	15	ISM	ENSMUSG00000055817.19	ENSMUST00000112352.10	2674	16	58	5110	30	73	5prime_fragment	FALSE	canonical	3	44	junction_14	288.286174429762	27	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTGTTGAATTAAACAC	NA	False	NA	NA	False	NA	NA	NA	84013649	84107742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478
33987	chr2	+	2025	3	NIC	ENSMUSG00000062647.17	novel	920	7	NA	NA	-13	-9	intron_retention	FALSE	canonical	3	5167	junction_1	169	1	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTTGACTGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	26800815	26803321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801139_26801433_26802814_26802999
33988	chr2	-	2296	10	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.6205507313623	1	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	29677658	29666121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29666505_29666698_29667225_29667290_29667969_29668743_29668881_29669830_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
33989	chr13	+	1094	1	Intergenic	novelGene_1408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	183	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCACCCACCCACACAACTA	NA	False	NA	NA	False	NA	NA	NA	64074361	64075455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_64074400_64075500
33990	chr13	+	3234	3	Antisense	novelGene_ENSMUSG00000113340.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACACTGGCCTTGGCCT	NA	False	NA	NA	False	NA	NA	NA	64076459	64116541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_64079442_64079877_64079953_64116364
33992	chr6	+	2869	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	0	1262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	63.3368420080726	412	45	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAACAAATAATGAAAT	778	False	NA	NA	False	NA	NA	NA	52079928	52091926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52080017_52082951_52083012_52083750_52083877_52089331
33993	chr19	+	1149	7	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	2326	304	1151	-304	3prime_fragment	FALSE	canonical	3	8704	junction_1	393.118903415013	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGAACTTTTTCCTGTCC	3169	False	NA	NA	False	NA	NA	NA	8946730	8955539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
33995	chr10	+	3139	5	NNC	ENSMUSG00000040034.16	novel	1286	8	NA	NA	-1061	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	532.630441769901	5	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCCAATGTTGGCTTGCT	NA	False	NA	NA	False	NA	NA	NA	7545457	7554642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7546884_7549348_7549485_7550769_7551638_7551728_7552127_7554331
33996	chr14	+	1567	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	75	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	669.287535783803	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGATTGTGTGTTCTTTTG	1761	False	NA	NA	False	NA	NA	NA	26359303	26377996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050_26377411_26377516
33997	chr14	+	2375	9	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	23.1179043167844	143	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCAGTGTACGTGGCC	NA	False	NA	NA	False	NA	NA	NA	70004926	70021857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015161_70015265_70017952_70018023_70019680_70020336_70021138
33998	chr1	+	2122	6	NIC	ENSMUSG00000053332.14	novel	1066	9	NA	NA	-1	0	intron_retention	FALSE	canonical	3	3085	junction_2	899.002914344553	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862740	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
34000	chr2	+	952	1	FSM	ENSMUSG00000064193.9	ENSMUST00000138679.2	1302	1	681	-331	681	331	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTCTAAATTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	80668165	80669117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_80668200_80669100
34001	chr18	-	2213	8	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.375952558535	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGTCTTTTGTGAATT	NA	False	NA	NA	False	NA	NA	NA	38472026	38460605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38461818_38461868_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
34002	chr11	+	4634	32	NNC	ENSMUSG00000020747.19	novel	5329	32	NA	NA	0	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	27.3836959779178	119	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAAAACATCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	115656267	115689848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115656380_115668073_115668204_115676265_115676386_115676640_115676769_115677001_115677139_115678187_115678391_115679064_115679217_115679488_115679592_115679770_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681858_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115683958_115684966_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
34005	chr1	-	2549	14	Antisense	novelGene_ENSMUSG00000118715.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGGGATCGGGAAGCCCC	NA	False	NA	NA	False	NA	NA	NA	175736304	175708363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_175708420_175708694_175708793_175710459_175710633_175715141_175715266_175716287_175716424_175719495_175719711_175720437_175720633_175721310_175721400_175723692_175723732_175726952_175727194_175728441_175729016_175731897_175732002_175733359_175733556_175735995
34006	chr15	+	2762	11	NNC	ENSMUSG00000022351.15	novel	2758	11	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	242.602741122189	1	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTTTTGGTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	59186920	59203042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198021_59198418_59198516_59201588_59201677_59202573
34007	chr11	+	2020	6	NIC	ENSMUSG00000020708.13	novel	1394	10	NA	NA	0	-6	intron_retention	FALSE	canonical	3	2261	junction_4	222.712909369888	3	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAACACTACAACTCCAG	4536	False	NA	NA	False	NA	NA	NA	106146979	106153940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147041_106147673_106147746_106151678_106152537_106152731_106152859_106152943_106153135_106153229
34008	chr8	-	5148	14	FSM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	153	7	8	-7	multi-exon	FALSE	canonical	3	41	junction_3	8.84180495107755	66	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAATTGTGTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	106553829	106494946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669_106499792_106500540_106500746_106500918_106501068_106501166_106501276_106502591_106502705_106506458_106506644_106508911_106508935_106513258_106513427_106532163_106532217_106552709_106552822_106553581
34009	chr11	+	1192	1	Intergenic	novelGene_2263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACAGGTGTGACTGCCA	NA	False	NA	NA	False	NA	NA	NA	50102368	50103560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_50102400_50103600
34010	chr7	+	2329	19	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	23	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	108.90595104419	29	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGTTCTAGTTTCTGGT	1013	False	NA	NA	False	NA	NA	NA	97130242	97190603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179539_97190467
34012	chr1	+	1597	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	-17	0	-17	0	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	1441	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	-1	True	NA	NA	False	NA	NA	NA	180731840	180735653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
34014	chr12	+	1508	11	NNC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	18	-52	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	732.639092596075	164	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTTTCTAGCACTGTA	3991	False	NA	NA	False	NA	NA	NA	100076430	100089612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089329
34015	chr6	-	1869	7	NNC	ENSMUSG00000030127.16	novel	795	7	NA	NA	38	-46	intron_retention	FALSE	canonical	3	43	junction_6	657.903995022577	2	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACACATGACACAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	124942215	124935824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942114
34016	chr5	+	2175	3	Antisense	novelGene_ENSMUSG00000080002.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	60	7	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAATTTGCTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	149578336	149588389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_149578485_149584119_149584669_149586911
34018	chr1	+	2976	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	21	1176	21	-1176	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	1	74	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTGTGTGTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	93682647	93717156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
34019	chrX	-	1291	5	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCGAAGCTCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	100492182	100487915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100487966_100488291_100488396_100488899_100488939_100489719_100489834_100491198
34020	chr3	-	2022	14	Antisense	novelGene_ENSMUSG00000106553.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCACGCGCTGGGGTGA	NA	False	NA	NA	False	NA	NA	NA	58464914	58433463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_58433506_58438505_58438575_58444951_58445030_58446948_58447068_58448460_58448557_58449050_58449141_58452417_58452488_58452646_58452788_58452961_58453038_58455813_58456383_58459983_58460102_58462953_58463064_58463986_58464053_58464536
34021	chr7	+	1275	2	FSM	ENSMUSG00000019737.15	ENSMUST00000176965.2	664	2	-44	-567	11	-70	multi-exon	FALSE	canonical	3	217	junction_1	0	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTTTGTCTGTTGAGGT	NA	False	NA	NA	False	NA	NA	NA	30014251	30015701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30014512_30014686
34022	chr4	-	1984	3	NIC	ENSMUSG00000003038.16	novel	927	4	NA	NA	2	-10	intron_retention	FALSE	canonical	3	2248	junction_1	186	21	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGGAATGCTGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	133695217	133692058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133693358_133693739_133694313_133695105
34023	chr2	-	4382	11	FSM	ENSMUSG00000026707.16	ENSMUST00000028034.15	2897	11	0	-1485	0	1485	multi-exon	FALSE	canonical	3	48	junction_2	8.53287759199674	115	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTAGCTTACATTTCTCA	978	False	NA	NA	False	NA	NA	NA	15054091	14998456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
34024	chr1	-	1666	15	NNC	ENSMUSG00000026209.16	novel	2488	15	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_14	245.655526612169	83	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	75294068	75285208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293508_75293978
34025	chr2	-	2026	11	NIC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	1	-127	combination_of_known_splicesites	FALSE	canonical	3	14	junction_5	87.372821861263	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACCCAGTTCTCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	5900144	5875966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
34026	chr16	+	2084	6	FSM	ENSMUSG00000022744.13	ENSMUST00000162057.8	1540	6	87	-631	-11	-12	multi-exon	FALSE	canonical	3	12	junction_1	183.824916700648	719	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGTCTAAATTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	58548374	58554602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_58548448_58549535_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
34027	chr7	-	1302	11	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	53	-614	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	789.852524209425	8	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGGGGTTTTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	59654806	59632863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59643409_59643454_59645153_59645303_59649065_59649162_59654783
34029	chr1	-	1950	14	FSM	ENSMUSG00000026134.12	ENSMUST00000027312.11	1975	14	25	0	25	0	multi-exon	FALSE	canonical	3	132	junction_10	82.0868352460372	721	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	NA	False	NA	NA	NA	33708851	33492890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
34030	chr12	-	2884	9	NNC	ENSMUSG00000041645.15	novel	2850	9	NA	NA	-19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	363.856062715739	26	115	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATCCTGAGGGTGTTGCA	NA	False	NA	NA	False	NA	NA	NA	103392108	103374243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_103374737_103376186_103376317_103377387_103377577_103382449_103382531_103383536_103384053_103384322_103384477_103385220_103385745_103390130_103390857_103392037
34031	chr2	+	1289	13	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	96	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	822.977149676034	8	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360314	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369034_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
34032	chr2	+	2074	11	NNC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	-25	-18	intron_retention	FALSE	non_canonical	0	0	junction_3	539.062417536226	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATGCATAACATCTGATA	NA	False	NA	NA	False	NA	NA	NA	69691941	69702172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69692057_69693567_69693660_69696533_69696633_69696831_69697007_69697615_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
34033	chr9	-	3243	14	NIC	ENSMUSG00000042790.17	novel	3964	14	NA	NA	3	-11	intron_retention	FALSE	canonical	3	22	junction_2	11.5799254987333	2	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTCCAAGAACAACAAAATC	9593	False	NA	NA	False	NA	NA	NA	45817702	45775607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_45776297_45777863_45777960_45778244_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
34034	chr7	+	1981	13	NNC	ENSMUSG00000015165.17	novel	2142	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1673.448327722	1527	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	NA	False	NA	NA	NA	28510361	28521674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28510497_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
34036	chr7	-	1249	13	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-3	138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	690.016681561637	2	17	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAACGAAAGGTCAGCCAG	-16	True	NA	NA	False	NA	NA	NA	45083704	45071819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45071939_45072111_45072249_45073527_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
34037	chr14	-	3927	24	NNC	ENSMUSG00000037572.18	novel	4260	25	NA	NA	6	275	intron_retention	FALSE	non_canonical	0	0	junction_4	109.465897012246	1	156	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATCGGTAAAAGTCACTA	NA	False	NA	NA	False	NA	NA	NA	47514283	47478713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482951_47484837_47484887_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495978_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
34038	chr11	+	1990	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	64	0	64	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	1283	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAGTATTGTTCTTAA	1699	False	NA	NA	False	NA	NA	NA	78403082	78413562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
34039	chr17	+	2993	8	NNC	ENSMUSG00000071266.14	novel	2926	7	NA	NA	-15	-14	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	32.3803921520164	129	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTATGAACTTAGACTTG	NA	False	NA	NA	False	NA	NA	NA	22643224	22675656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670077_22670134_22670684_22670751_22672432_22672560_22673404
34040	chr15	-	1566	8	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	399	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	577.7606665005	77	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056394	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038564_83044300_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
34041	chr2	-	1720	3	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCTTCGCCGCAGCTGA	5881	False	NA	NA	False	NA	NA	NA	162926563	162922653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162922742_162924468_162924618_162925080
34042	chr8	-	2126	5	NIC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	2	2	intron_retention	FALSE	canonical	1	664	junction_2	532.486619550201	16	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGTCAGTGGATGGG	8402	False	NA	NA	False	NA	NA	NA	85751908	85744557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85744885_85745150_85745548_85746150_85746302_85746388_85746538_85750806
34043	chr8	+	5259	13	NNC	ENSMUSG00000033009.16	novel	5310	13	NA	NA	-11	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.8058781020357	226	90	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATTTCTGCTATGGTGG	NA	False	NA	NA	False	NA	NA	NA	94763876	94794540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94764079_94765592_94765739_94773898_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782163_94782293_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806
34044	chr4	-	679	1	Intergenic	novelGene_1911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	399	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGATGCCTGGCACCTGC	NA	False	NA	NA	False	NA	NA	NA	103422434	103421755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_103421800_103422400
34046	chr9	+	1614	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	30	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	713.574052915381	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1219	False	NA	NA	False	NA	NA	NA	108437708	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440070_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
34047	chr15	-	1800	16	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	590.153253165838	1	58	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2754	False	NA	NA	False	NA	NA	NA	77855004	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843762_77843851_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849219_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
34049	chr6	+	2581	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	69	0	69	0	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	548	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGCTTGGATTCCTGAAGT	NA	False	NA	NA	False	NA	NA	NA	137712144	137728930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
34050	chr3	+	2224	5	NNC	ENSMUSG00000052310.10	novel	2364	4	NA	NA	29	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	59.7886904021153	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATGGTATCTGATT	NA	False	NA	NA	False	NA	NA	NA	90155507	90160917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992_90159237_90159345
34051	chr7	-	4056	6	Antisense	novelGene_ENSMUSG00000057101.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	66	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTTACGCAGCCGCTGTC	NA	False	NA	NA	False	NA	NA	NA	23807129	23781287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_23781661_23784847_23784930_23785910_23786011_23797240_23797319_23800870_23800993_23803828
34053	chr17	+	3357	14	FSM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	-77	2255	-77	-811	multi-exon	TRUE	canonical	3	392	junction_3	50.5723455079702	320	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGAGCCCTCTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	56347361	56375021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
34054	chrX	-	3813	10	NNC	ENSMUSG00000031166.14	novel	1749	10	NA	NA	-33	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	13.7903168747557	71	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGGCCTCTCTTCATT	7185	False	NA	NA	False	NA	NA	NA	7998783	7989541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7991383_7991486_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525
34055	chr3	-	1622	13	FSM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	-20	-193	-20	0	multi-exon	FALSE	canonical	0	0	junction_12	248.441964495176	84	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88858508	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
34056	chr9	+	1583	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	63	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	713.574052915381	2	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1252	False	NA	NA	False	NA	NA	NA	108437741	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440070_108440332_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
34057	chr5	+	2795	22	NNC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	24	210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	142.258284472764	3	58	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGGACCCTCATCTGG	NA	False	NA	NA	False	NA	NA	NA	121536022	121578204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121536130_121545255_121545334_121546255_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558665_121562584_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
34058	chr15	+	1717	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	261	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	596.354078966515	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513490	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248_100517535_100517686
34059	chr16	+	3832	7	NNC	ENSMUSG00000014074.18	novel	4460	6	NA	NA	41	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	8.47873156131794	158	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTCTCATGTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	32096319	32120260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936_32108059_32110720_32110800_32117205_32118585_32119179
34060	chr2	+	1788	11	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	-5564	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	501.318421764052	1	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTCATGTGGCAAC	NA	False	NA	NA	False	NA	NA	NA	30227387	30234274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231700_30231842_30232384_30232460_30232610_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
34061	chr3	-	3589	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107236.9	3618	15	-14	43	-14	-4	multi-exon	FALSE	canonical	3	17	junction_14	9.68798961896341	120	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATTAAAGTTCTAGCAAT	1239	False	NA	NA	False	NA	NA	NA	95014200	94965883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990137_95013686
34062	chr14	+	886	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	166	117	-43	1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	121	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1004	False	NA	NA	False	NA	NA	NA	76082698	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
34063	chr7	+	1950	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	33	9	33	-9	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	7	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCTTCTAGAGGACTGAG	NA	False	NA	NA	False	NA	NA	NA	63835161	63861166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
34066	chr5	+	2102	14	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-2	505	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	416.077072400673	1	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTCAAGAATACTGTTA	NA	False	NA	NA	False	NA	NA	NA	31652108	31668708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652695_31652861_31652956_31654654_31654691_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668116
34067	chr4	-	3307	9	NNC	ENSMUSG00000028893.9	novel	3475	10	NA	NA	104	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	267.244738021163	2	116	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGGTTTGTTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	132237708	132219361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227296_132237374
34068	chr2	+	2361	3	NNC	ENSMUSG00000074884.13	novel	3056	3	NA	NA	-3	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	2965.5	20	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAATCTGAGCATTCTGGG	NA	False	NA	NA	False	NA	NA	NA	121279855	121283485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121279923_121280455_121280494_121281229
34069	chr11	+	3568	4	ISM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	9	12	9	-10	intron_retention	FALSE	canonical	2	58	junction_2	14.4299072146089	79	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGAAGTCATGTTCTC	1698	False	NA	NA	False	NA	NA	NA	58868950	58882271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550
34070	chr11	+	2973	13	FSM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	-483	808	42	108	multi-exon	FALSE	canonical	3	74	junction_12	6.07076326887045	186	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAAGGACTGACACTCT	NA	False	NA	NA	False	NA	NA	NA	116744162	116765653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
34071	chr9	+	3683	20	FSM	ENSMUSG00000032374.15	ENSMUST00000160359.2	3663	20	-12	-8	-12	0	multi-exon	FALSE	canonical	2	5	junction_13	23.4907891420283	76	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGCCTCTCTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	92424304	92490481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92484037_92484101_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
34072	chr14	+	1401	3	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	57	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6648	False	NA	NA	False	NA	NA	NA	76742026	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76743856_76744307_76744503
34073	chr17	-	2786	17	NNC	ENSMUSG00000025733.18	novel	3189	19	NA	NA	3	-5	intron_retention	FALSE	canonical	0	0	junction_6	38.0287720022617	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAATGTGACTGCTGTTTT	6223	False	NA	NA	False	NA	NA	NA	26063289	26057435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059701_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228
34074	chr9	+	1942	9	NIC	ENSMUSG00000032387.16	novel	1803	9	NA	NA	-29	-2	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	514.959813359256	25	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTCTGATTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	65536900	65567806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65537005_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
34075	chr12	+	3538	28	NNC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-2	-934	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	75.0963350211426	2	16	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCTTTTGTATATTG	NA	False	NA	NA	False	NA	NA	NA	116369051	116424297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_116369082_116369321_116369498_116370817_116370931_116375994_116376184_116376682_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
34076	chr16	+	2217	11	FSM	ENSMUSG00000022721.20	ENSMUST00000140206.8	3520	11	33	1270	33	0	multi-exon	FALSE	canonical	3	9	junction_9	81.7334692766678	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	302	False	NA	NA	False	NA	NA	NA	18066779	18071366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070787_18070885_18070963
34077	chr5	+	3743	4	ISM	ENSMUSG00000029120.11	ENSMUST00000031003.11	4088	9	70975	21	58	-21	3prime_fragment	FALSE	canonical	3	192	junction_2	11.2644968324772	5	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAACAAATGTTACATCTA	5328	False	NA	NA	False	NA	NA	NA	37096831	37112401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_37097606_37104411_37104582_37106896_37106989_37109694
34078	chr14	+	3403	9	Antisense	novelGene_ENSMUSG00000035078.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	34.0640481299566	3	74	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGCACACATGGTAACA	9722	False	NA	NA	False	NA	NA	NA	63758042	63771994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_63758513_63758595_63759074_63760052_63761029_63761076_63761669_63764241_63764392_63765559_63765772_63767171_63767315_63767635_63767799_63771775
34079	chr4	+	2720	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	103	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	314	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	NA	False	NA	NA	NA	129355476	129382291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
34080	chrX	+	2344	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	79	3	0	-3	multi-exon	FALSE	canonical	3	597	junction_2	148.5	9	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAAAAATCTTGCATAGT	NA	False	NA	NA	False	NA	NA	NA	133502006	133507800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133503440_133503512_133505603
34081	chr9	+	1326	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1430	-157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	6460.28849854053	2	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGACAAACCCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	64082104	64085791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085175_64085300_64085504
34082	chr13	+	2118	10	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	6	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	804.66069837303	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGAAACCACTCTTGGTA	NA	False	NA	NA	False	NA	NA	NA	3588139	3615810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601077_3604409_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614977
34083	chrX	+	1255	6	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	0	-126	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	154.269893368732	9	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGTGGGTATCCGCTG	NA	False	NA	NA	False	NA	NA	NA	99537960	99559605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549586_99559162
34084	chr13	-	1511	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	237.004219371723	1	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311968_34312045_34312447_34312906_34312966_34313228_34313338_34314159
34085	chr2	-	4019	26	FSM	ENSMUSG00000026792.17	ENSMUST00000113200.8	4030	26	14	-3	0	-1	multi-exon	FALSE	canonical	3	22	junction_16	3.74165738677394	45	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAGTTTGCATAGATTC	NA	False	NA	NA	False	NA	NA	NA	32851612	32815228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851268_32851573
34088	chr17	+	2593	3	NIC	ENSMUSG00000040658.8	novel	1190	4	NA	NA	49	0	intron_retention	FALSE	canonical	3	629	junction_1	36	24	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCACGGTGTC	NA	False	NA	NA	False	NA	NA	NA	46807685	46810550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46809420_46809568_46809680_46809802
34089	chr5	-	2407	7	NIC	ENSMUSG00000029103.17	novel	2981	8	NA	NA	-19	96	intron_retention	FALSE	canonical	3	836	junction_6	70.2487643228611	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCCTTGCCTGGTATCTC	NA	False	NA	NA	False	NA	NA	NA	35263059	35250316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_35250731_35252193_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
34090	chr2	-	3412	17	NNC	ENSMUSG00000074643.13	novel	3492	17	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	159.396910258637	1	159	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTCCTCAGTGGCCGCT	NA	False	NA	NA	False	NA	NA	NA	155953820	155913771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155915571_155915714_155915956_155916095_155916230_155918156_155918209_155919318_155919372_155919475_155919610_155919694_155919755_155919852_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920669_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953726
34091	chr16	-	1774	5	NIC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	5	-6	intron_retention	FALSE	canonical	3	10558	junction_3	1668.53848846828	61	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGACCAGCTGACAAGGC	7138	False	NA	NA	False	NA	NA	NA	18066591	18057653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
34092	chr7	+	2629	15	FSM	ENSMUSG00000030795.19	ENSMUST00000106251.10	5536	15	34	2873	0	796	multi-exon	FALSE	canonical	3	619	junction_3	208.17746550205	1062	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTCCCAAAGCTAACTAA	1184	False	NA	NA	False	NA	NA	NA	127566662	127582000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
34093	chr19	-	1370	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	28	4	28	-4	multi-exon	FALSE	canonical	3	295	junction_2	36.3583414649629	281	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAAAATGTCAGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	38212558	38176932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
34094	chr17	+	2097	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	476	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	2	107	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	29251646	29261871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
34095	chr10	+	1639	7	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	407.571534280248	55	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	NA	False	NA	NA	NA	72490718	72510796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492390_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
34096	chr4	-	3330	7	Antisense	novelGene_ENSMUSG00000029009.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	74	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCGGTGGCGGCGAGGGT	8609	False	NA	NA	False	NA	NA	NA	148141081	148123579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_148123865_148126038_148126285_148127879_148129010_148132527_148132723_148138036_148138137_148139439_148139558_148139825
34097	chr6	-	2071	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	191.248488556119	1172	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTCTCTTTATTTGATA	4590	False	NA	NA	False	NA	NA	NA	49240967	49220854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229780_49230043_49240771
34098	chr1	+	3820	2	FSM	ENSMUSG00000097814.6	ENSMUST00000181489.3	3849	2	27	2	15	-2	multi-exon	FALSE	canonical	3	20	junction_1	0	83	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATAATCATCTCTATTAT	NA	False	NA	NA	False	NA	NA	NA	96799972	96808957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_96800394_96805558
34099	chr5	+	2101	14	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-6	555	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	269.32883928135	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTTGTGGTAAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	31652104	31668758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652695_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
34100	chr3	-	3266	16	Antisense	novelGene_ENSMUSG00000027820.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTGGGCGGAGGCTGC	NA	False	NA	NA	False	NA	NA	NA	63257830	63203636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_63203740_63207543_63207715_63208398_63208433_63234131_63234295_63235203_63235287_63235392_63235487_63235585_63235710_63237070_63237136_63247434_63247572_63249327_63249426_63250914_63251053_63252543_63252671_63253472_63253571_63254555_63254637_63256036_63256872_63256915
34101	chr13	+	1553	4	NIC	ENSMUSG00000021595.19	novel	4164	18	NA	NA	-54	-19	intron_retention	FALSE	canonical	3	1835	junction_3	78.1977550118217	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCTATTATGATCATGTA	6024	False	NA	NA	False	NA	NA	NA	69778804	69782434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_69779435_69779650_69779790_69781346_69781387_69781690
34103	chr13	-	2498	13	Intergenic	novelGene_1491	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	46	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCCGGCTCGGCCGGAA	NA	False	NA	NA	False	NA	NA	NA	84443978	84370443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_84370552_84399346_84399451_84405877_84405959_84408258_84408358_84420287_84420447_84430829_84430980_84431420_84431484_84432103_84432245_84434803_84434916_84440493_84440531_84440582_84440671_84441497_84441593_84442717
34104	chr2	-	3303	19	NIC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	6	-5	intron_retention	FALSE	canonical	3	76	junction_6	22.5591814272297	183	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACATGCAGTCGCCCTC	NA	False	NA	NA	False	NA	NA	NA	130539383	130526037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538567_130538676_130539278
34105	chr11	-	2458	11	NIC	ENSMUSG00000025137.16	novel	1486	13	NA	NA	-8	16	intron_retention	FALSE	canonical	3	99	junction_5	98.1063198779773	341	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCGGGAAGAAACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	120508703	120500896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
34106	chr17	+	3006	2	ISM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	66	35	66	-35	intron_retention	FALSE	canonical	3	317	junction_1	0	6	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAGTAAAAATCCGTTT	NA	False	NA	NA	False	NA	NA	NA	80531935	80535891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_80532100_80533049
34108	chr12	-	1894	4	NNC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-239	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	28.9865869364129	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77009214	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76985530_76986740_76986865_76999942_77000051_77009036
34109	chr14	+	3653	6	FSM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	24	1	-11	-1	multi-exon	FALSE	canonical	3	340	junction_4	10.4957134107215	121	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAGTTGTTTTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	66534503	66548872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260_66545380_66546183
34110	chr12	+	1890	13	NNC	ENSMUSG00000073079.7	novel	4498	16	NA	NA	-12	384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	341.627070876351	4	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGGGTTCGTTAACTTT	2828	False	NA	NA	False	NA	NA	NA	55127298	55160060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55146671_55146849_55148124_55148261_55149303_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
34111	chrX	+	2518	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-15	4	-15	-4	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	1007	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTCGACTACCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	47345723	47371326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
34112	chr6	-	1804	10	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	76	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	308.087810153911	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTACTTAGCCTCACAGT	NA	False	NA	NA	False	NA	NA	NA	95695705	95451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95451635_95451680_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95565965_95632438_95632581_95695669
34113	chr2	-	2308	4	NIC	ENSMUSG00000044627.12	novel	768	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	3426	junction_2	83.7947227190087	42	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32178043	32168827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32170816_32171697_32171823_32177608_32177658_32177897
34114	chr10	+	1583	16	NNC	ENSMUSG00000058799.17	novel	3934	14	NA	NA	477	-9	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	642.984133206688	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTCATGGGATGCTGT	NA	False	NA	NA	False	NA	NA	NA	111309618	111332736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309854_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
34115	chr7	-	2373	14	NNC	ENSMUSG00000048012.20	novel	698	6	NA	NA	-26443	-16290	intron_retention	TRUE	non_canonical	0	0	junction_1	0	3	35	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGGAATAGAAACCCTGAC	NA	False	NA	NA	False	NA	NA	NA	44426917	44400323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44400417_44401542_44401599_44403237_44403377_44407163_44407317_44409120_44409317_44410299_44410364_44412411_44412475_44413542_44414310_44416542_44416637_44417864_44417999_44418955_44419078_44420287_44420345_44424797_44424959_44426643
34116	chr10	+	2186	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	-12	1261	-2	0	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	406	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTCCCAAGAACTCT	NA	False	NA	NA	False	NA	NA	NA	24025212	24064859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
34117	chr7	+	3898	5	NIC	ENSMUSG00000074220.11	novel	2117	5	NA	NA	0	1781	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	10.5445483544816	42	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACGATGCTGTGGTTTG	5287	False	NA	NA	False	NA	NA	NA	29821394	29836156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29821502_29825192_29825267_29830097_29830253_29830956_29831050_29832687
34119	chr3	+	1936	14	Antisense	novelGene_ENSMUSG00000015748.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGAACCGGAAACCTTCC	5218	False	NA	NA	False	NA	NA	NA	95741394	95763100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_95741515_95742665_95742780_95742955_95743056_95743725_95743872_95747983_95748062_95751497_95751664_95752235_95752543_95754685_95754908_95755076_95755163_95756228_95756373_95758873_95759009_95760758_95760948_95761865_95761953_95763058
34120	chr15	+	2338	10	NIC	ENSMUSG00000022561.14	novel	2237	12	NA	NA	-18	-5	intron_retention	FALSE	non_canonical	3	245	junction_1	19.750918090866	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTACCTTGGGATCCTG	4977	False	NA	NA	False	NA	NA	NA	76215694	76219093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
34124	chr5	+	1569	1	Genic_Genomic	ENSMUSG00000036817.15	novel	NA	NA	NA	NA	794	765	mono-exon	FALSE	NA	NA	NA	NA	NA	49	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTAGGTCTCCAATGCCCC	1350	False	NA	NA	False	NA	NA	NA	139213291	139214860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_139213300_139214900
34126	chr8	+	1649	9	NNC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	-57	-4	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	193.213895398338	2239	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAATGTGGCTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	43633520	43646914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_43633650_43635378_43635439_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
34127	chr2	-	1515	1	Intergenic	novelGene_2564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGTTTCAGGCAGAAGG	729	False	NA	NA	False	NA	NA	NA	12418736	12417221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_12417200_12418700
34129	chr7	-	1300	8	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	3	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	5931.55847986008	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTGTACGATGTGTGC	NA	False	NA	NA	False	NA	NA	NA	44777574	44774989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777251
34131	chr2	+	2308	13	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	6	-1286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6.12145589073565	1	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCATTTTCTACTCAAGAA	2748	False	NA	NA	False	NA	NA	NA	30023808	30040739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30025420_30025565_30027098_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711_30040288_30040374
34133	chr11	-	3630	3	NIC	ENSMUSG00000044795.13	novel	753	4	NA	NA	-89	976	intron_retention	FALSE	canonical	3	23	junction_2	14.5	5	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGAATTCATCTGCAAT	NA	False	NA	NA	False	NA	NA	NA	69286248	69281774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69284695_69285453_69285875_69285959
34134	chr7	-	1791	8	NIC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	2	0	intron_retention	FALSE	canonical	3	2113	junction_2	112.91553643032	428	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	NA	False	NA	NA	NA	27749471	27741131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27741346_27741525_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
34135	chr19	+	1796	3	ISM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	-18	3	0	-1	intron_retention	FALSE	canonical	3	781	junction_1	75	289	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTATTGTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	8701503	8703804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8701554_8701766_8702086_8702377
34136	chr10	-	2290	10	NNC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-5603	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_9	71.4082334361321	62	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	5909	False	NA	NA	False	NA	NA	NA	41628237	41594836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
34137	chr5	-	3077	4	FSM	ENSMUSG00000016510.12	ENSMUST00000110566.2	1134	4	-1	-1942	-1	1095	multi-exon	FALSE	canonical	3	88	junction_3	16.996731711976	438	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACACCATGCACTCCCC	NA	False	NA	NA	False	NA	NA	NA	146900608	146890234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900532
34138	chrX	+	3618	5	NIC	ENSMUSG00000023092.17	novel	2770	8	NA	NA	22205	3	intron_retention	FALSE	canonical	3	16	junction_4	54.0046294311886	2	118	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGCCTCCTGTCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	55799693	55838703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55799752_55833348_55833531_55834503_55835407_55835823_55836799_55837203
34139	chr11	-	5434	17	ISM	ENSMUSG00000034354.18	ENSMUST00000040448.13	5534	18	14966	17	-2896	-2	3prime_fragment	TRUE	canonical	3	144	junction_2	25.9722658570638	110	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTCCGCACGGTGGCA	NA	False	NA	NA	False	NA	NA	NA	4481302	4430891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_4432940_4435362_4435452_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477835_4477953_4478316_4478407_4481221
34141	chr4	-	1454	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	798.476950199566	9	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093560_41093949_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
34143	chr19	-	1486	3	Antisense	novelGene_ENSMUSG00000011752.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATCTAGAAATTAAGAAGT	9931	False	NA	NA	False	NA	NA	NA	41907096	41904047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41904313_41905093_41905262_41906043
34144	chr10	-	1753	7	ISM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	985	7	445	-7	3prime_fragment	FALSE	canonical	3	197	junction_1	19.2353840616713	10	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTACATTTTGTTACAT	1811	False	NA	NA	False	NA	NA	NA	81462646	81457627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323
34145	chr8	+	3434	11	FSM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	55	8	34	-8	multi-exon	FALSE	canonical	3	271	junction_7	24.9617707705203	270	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCCGAGTCTGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	4288794	4297888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
34146	chr6	-	3594	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	221	1	221	0	multi-exon	FALSE	canonical	3	176	junction_3	4.02768199119819	83	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTTGGTTTTTTGGTTT	9924	False	NA	NA	False	NA	NA	NA	56774500	56754509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774443
34147	chr2	+	3400	3	Antisense	novelGene_ENSMUSG00000036160.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGGCGTGACCCCGCCGGA	NA	False	NA	NA	False	NA	NA	NA	26786421	26792885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_26789438_26789740_26789943_26792703
34148	chr16	-	1289	3	NNC	ENSMUSG00000033809.16	novel	1132	7	NA	NA	2881	-367	intron_retention	FALSE	non_canonical	0	0	junction_1	186	4	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGGCTCACACACCTGC	NA	False	NA	NA	False	NA	NA	NA	20426600	20424635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20424755_20425273_20425353_20425509
34150	chr9	-	2166	17	NIC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	-14	-1	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	347	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAATAAATTTTGTTAAAG	7545	False	NA	NA	False	NA	NA	NA	107749988	107650766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
34153	chr11	-	3959	10	NIC	ENSMUSG00000032633.13	novel	3437	13	NA	NA	5049	32	intron_retention	FALSE	canonical	3	256	junction_3	18.5119247520265	4	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTAAACTGCCGACTACA	NA	False	NA	NA	False	NA	NA	NA	59695365	59682583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59692030_59692954_59693177_59694574_59694722_59695346
34155	chr1	+	1900	1	NIC	ENSMUSG00000067017.6	novel	2858	2	NA	NA	0	-959	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	88	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTGTAAAGGTCACAGG	NA	False	NA	NA	False	NA	NA	NA	105383695	105385595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_105383700_105385600
34156	chr18	-	2793	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	13	-234	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1567.57176370812	1	145	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAAGCCTCTTGATCTCC	212	False	NA	NA	False	NA	NA	NA	35087397	35070700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073340_35073873_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
34157	chr7	-	4371	23	NIC	ENSMUSG00000014418.17	novel	4422	23	NA	NA	12	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_14	17.3898540762534	1	67	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACATGGATATGAGATT	NA	False	NA	NA	False	NA	NA	NA	46445476	46409894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46410875_46412366_46412638_46414242_46414350_46416517_46416632_46417456_46417577_46418360_46418517_46418716_46418838_46421030_46421606_46421895_46421968_46422543_46422694_46424237_46424362_46425188_46425376_46426299_46426459_46427444_46427525_46428495_46428585_46432566_46432639_46432894_46433108_46435933_46436068_46437596_46437790_46438351_46438417_46438512_46438624_46440340_46440473_46445330
34158	chr14	+	1224	1	ISM	ENSMUSG00000053205.10	ENSMUST00000226873.2	12974	11	26358	6833	5944	1791	mono-exon	FALSE	NA	NA	NA	NA	NA	59	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACCAGGCTGTCCTCAA	NA	False	NA	NA	False	NA	NA	NA	45614907	45616131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_45614900_45616100
34159	chr11	-	1533	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTTGGAGCCGCGCCAA	5981	False	NA	NA	False	NA	NA	NA	120655210	120653677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120653700_120655200
34160	chr8	-	1435	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	909.417822296333	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTCCTAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	108315063	108307011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307672_108307785_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
34161	chr1	-	1932	4	NIC	ENSMUSG00000079610.10	novel	2646	4	NA	NA	46	-116	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	27.1947707391615	21	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACTATCTAATGTATATT	7072	False	NA	NA	False	NA	NA	NA	36586254	36577290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_36578616_36580904_36581144_36581842_36581947_36585990
34162	chr2	+	266	2	FSM	ENSMUSG00000085929.2	ENSMUST00000142511.2	803	2	-23	560	-23	-383	multi-exon	FALSE	canonical	0	0	junction_1	0	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTCGAGGCGTT	NA	False	NA	NA	False	NA	NA	NA	27430414	27432814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_27430607_27432740
34163	chr3	-	1127	7	NNC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-472	3160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTTGCAAGTGAACCCG	4786	False	NA	NA	False	NA	NA	NA	89090072	89084901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89084929_89086621_89086744_89087556_89087688_89088035_89088195_89088480_89088582_89089230_89089350_89089604
34164	chr17	-	1615	11	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-110	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	183.641525805031	4	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGCGAGTCATCACTG	NA	False	NA	NA	False	NA	NA	NA	57318398	57310401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57310632_57310720_57310812_57310914_57311033_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
34165	chr8	-	3649	18	NNC	ENSMUSG00000052488.8	novel	3713	18	NA	NA	5	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.823702567583	1	171	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTCTAGCTGTGGATGA	NA	False	NA	NA	False	NA	NA	NA	73228974	73214326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73215186_73215281_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222364_73223703_73223875_73224017_73224072_73224714_73224900_73228455_73228630_73228901
34166	chr13	-	2630	4	FSM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	26	0	-5	0	multi-exon	FALSE	canonical	3	34	junction_2	7.71722460186015	107	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGGTCATAGTGTTTA	9248	False	NA	NA	False	NA	NA	NA	67674270	67663899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67666232_67668744_67668841_67669311_67669439_67674195
34168	chr15	+	1835	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	223	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	596.354078966515	1393	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATGAAGTTGCATTACAC	NA	False	NA	NA	False	NA	NA	NA	100513452	100518618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248_100517425_100517477
34169	chr6	-	1613	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	canonical	3	625	junction_4	4057.45729336736	4	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828002	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822764_87827885
34170	chr3	-	3646	17	FSM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	213	4	158	-4	multi-exon	FALSE	canonical	3	702	junction_5	41.8762593094226	230	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTTAGTAGTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	107603663	107570439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357_107579453_107580751_107580855_107581323_107581425_107582326_107582471_107585035_107585148_107603473
34171	chr1	-	3181	14	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	23	2	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	29.9368170945323	262	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAATGTGGAATTTTAAA	681	False	NA	NA	False	NA	NA	NA	150268783	150237061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268440
34172	chr3	+	2170	2	Genic_Genomic	ENSMUSG00000074637.8	novel	2057	1	NA	NA	-410	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1974	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTATGCCTGAGTCTTTC	4197	False	NA	-58	True	NA	NA	NA	34704143	34706607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_34704446_34704739
34173	chr11	+	4528	10	FSM	ENSMUSG00000045980.14	ENSMUST00000061450.7	4564	10	24	12	0	-12	multi-exon	FALSE	canonical	3	30	junction_1	6.92463842261461	116	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTATTACCCACGGTTGT	NA	False	NA	NA	False	NA	NA	NA	115078336	115137837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115078425_115079035_115079149_115088061_115088184_115091645_115091728_115092141_115092239_115092957_115093039_115095887_115095988_115096300_115096410_115119246_115119341_115134195
34174	chr8	-	1591	18	NIC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	1	18	junction_1	175.536981385434	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3385	False	NA	NA	False	NA	NA	NA	105261217	105237659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105237900_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
34176	chr13	+	3686	2	FSM	ENSMUSG00000067586.5	ENSMUST00000087978.5	4463	2	110	667	110	-667	multi-exon	FALSE	canonical	3	36	junction_1	0	60	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGAGGCCTGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	51562784	51576166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_51562982_51572677
34177	chr11	-	3372	3	FSM	ENSMUSG00000025574.14	ENSMUST00000153872.2	678	3	-2322	-372	-2322	-7	multi-exon	FALSE	canonical	3	1007	junction_2	44	9	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGAGAACGTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	117710572	117706358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_117706966_117707272_117707393_117707927
34178	chr17	-	4109	27	NIC	ENSMUSG00000040356.17	novel	3951	28	NA	NA	-16	0	intron_retention	FALSE	canonical	3	90	junction_19	16.3224262177268	93	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTGCTTGGAGTATGG	5289	False	NA	NA	False	NA	NA	NA	35069202	35058224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
34179	chr18	+	2511	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	-86	-9	0	9	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	825	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGAATCTGGGATTTTC	5647	False	NA	NA	False	NA	NA	NA	31937142	31968484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
34180	chr11	+	2005	7	Antisense	novelGene_ENSMUSG00000119662.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	87	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCGGAGTGCCCGCCTAT	NA	False	NA	NA	False	NA	NA	NA	69557779	69563141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69558938_69559021_69559373_69559467_69559580_69559903_69560069_69561441_69561574_69561753_69561803_69563103
34181	chrX	-	1955	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	20	-2	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	394.885434862653	9	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGGTTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	47602283	47563823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_47564066_47564522_47564637_47566576_47566702_47569001_47569145_47570880_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
34182	chr15	-	1810	15	NIC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	20	0	intron_retention	FALSE	canonical	3	447	junction_6	35.8528739633041	128	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGATGTAACTCCGAGTG	NA	False	NA	NA	False	NA	NA	NA	102259102	102246686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102246941_102247075_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
34183	chr14	+	2767	14	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	-5	-640	intron_retention	FALSE	non_canonical	0	0	junction_2	117.977281937051	2	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCGCCGCCGTCTCCCCCC	-3	True	NA	NA	False	NA	NA	NA	25842601	25886588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25869287_25869346_25870497_25870606_25872935_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
34185	chr1	-	261	2	ISM	ENSMUSG00000102976.7	ENSMUST00000191932.2	323	4	540	1062	462	-718	internal_fragment	FALSE	canonical	3	13	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCCAAAAAATTCCTGGAAA	NA	False	NA	NA	False	NA	NA	NA	133588557	133583119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_133583137_133588313
34186	chr5	+	1801	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	30	841	4	252	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	978	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAATTTTCCTTAGAGTG	NA	False	NA	NA	False	NA	NA	NA	124717232	124734902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
34187	chr1	-	1724	4	ISM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	1586	10	797	-10	intron_retention	FALSE	canonical	3	502	junction_3	39.3643945152921	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCTAACCTTGGCCTG	NA	False	NA	NA	False	NA	NA	NA	135184590	135181326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971
34188	chr2	+	1475	14	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	4500	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	789.744030136407	1	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTCTCTGCGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	31364718	31410682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31364783_31366897_31366991_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
34189	chrX	-	3405	10	FSM	ENSMUSG00000035776.15	ENSMUST00000037391.12	3600	10	189	6	-11	-6	multi-exon	FALSE	canonical	3	43	junction_4	6.51683479938452	110	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTATGTCCTGATGTGAT	NA	False	NA	NA	False	NA	NA	NA	70536266	70463671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70493544_70493614_70494216_70494280_70536127
34191	chr9	-	4413	27	FSM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	233	3039	-15	-3039	multi-exon	FALSE	canonical	3	45	junction_14	9.30228705097291	48	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATAAACTGCCAT	NA	False	NA	NA	False	NA	NA	NA	87137356	87074668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693_87086338_87088895_87089109_87092849_87092955_87093709_87093874_87094904_87095032_87099120_87099227_87100557_87100671_87102503_87102645_87103150_87103379_87104096_87104228_87107731_87107994_87109206_87109481_87113430_87113513_87114031_87114224_87119885_87120003_87120406_87120438_87121867_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
34193	chr6	+	1616	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	465.928478351319	243	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2932	False	NA	NA	False	NA	NA	NA	122285946	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286_122293723_122294351
34194	chr2	+	4016	24	NNC	ENSMUSG00000026854.17	novel	430	6	NA	NA	220	-945	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	10.5407661236074	25	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCTAGCTTGTACTGTG	NA	False	NA	NA	False	NA	NA	NA	30886279	30912649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30886377_30888784_30888881_30890068_30890123_30892567_30892631_30892927_30893060_30894415_30894513_30894943_30895014_30896395_30896510_30897790_30897870_30900177_30900626_30900990_30901135_30901392_30901509_30901634_30901808_30902318_30902414_30906299_30906334_30906504_30906551_30907140_30907322_30907396_30907524_30907693_30907864_30907944_30908027_30908726_30908836_30909796_30909900_30910840_30910913_30911335
34196	chr5	-	1633	10	ISM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	5409	-2	5409	2	3prime_fragment	FALSE	canonical	3	1363	junction_8	100.510671382338	8	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGGGTCTCTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	24777056	24770340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000
34197	chr19	+	4213	1	Antisense	novelGene_ENSMUSG00000024955.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	88	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCTAGAGTTAGTAGTGT	NA	False	NA	NA	False	NA	NA	NA	6892468	6896681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_6892500_6896700
34199	chr18	-	2894	11	FSM	ENSMUSG00000024588.11	ENSMUST00000236586.3	6571	11	39	3638	2	709	multi-exon	FALSE	canonical	3	260	junction_4	29.1315979650963	223	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACAGAACATTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	64622132	64589622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64616404_64616529_64621971
34200	chrX	-	1822	1	Intergenic	novelGene_3923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCTTTGTAGCAAGGAA	NA	False	NA	NA	False	NA	NA	NA	47635607	47633785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_47633800_47635600
34201	chr11	-	1917	2	FSM	ENSMUSG00000020460.16	ENSMUST00000143418.2	681	2	31	-1267	0	-3	multi-exon	FALSE	canonical	3	7569	junction_1	0	50	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTAGTATTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	29497860	29495848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29497746_29497840
34203	chr5	+	3335	5	Antisense	novelGene_ENSMUSG00000025747.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGCCTCTTCCTGCTGG	3422	False	NA	NA	False	NA	NA	NA	30266965	30278618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30267038_30268233_30269187_30273465_30273638_30274830_30276705_30278354
34204	chr4	+	2882	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	-20	0	-20	0	multi-exon	FALSE	canonical	3	107	junction_3	9.52050418832952	416	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGGTATTCTTCTTC	-36	True	NA	NA	False	NA	NA	NA	53826024	53862019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
34206	chr4	+	1872	18	NNC	ENSMUSG00000028902.5	novel	1820	17	NA	NA	-5593	-19	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	308.79832950406	3558	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGTTTCTGAAACCCA	NA	False	NA	NA	False	NA	NA	NA	124602975	124626234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124603030_124608551_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
34207	SIRV3	-	1712	4	Fusion	SIRV3B_SIRV3D	novel	479	3	NA	NA	-3060	-968	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	51	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCCAAGTATTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	7822	1968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2005_4567_4784_6061_7254_7554
34208	chr18	-	2713	10	Antisense	novelGene_ENSMUSG00000024423.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGCTCCAAATGCCCAAA	NA	False	NA	NA	False	NA	NA	NA	13125438	13105374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_13105427_13107766_13107897_13109033_13109089_13109525_13109589_13117295_13117420_13118273_13118372_13119378_13119452_13121348_13121441_13122799_13122937_13123549
34209	chr4	-	936	1	FSM	ENSMUSG00000083011.2	ENSMUST00000118069.2	1212	1	343	-67	343	67	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTATGCACACATGGTG	NA	False	NA	NA	False	NA	NA	NA	112813140	112812204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_112812200_112813100
34210	chr5	-	1384	4	NIC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	14	-2	intron_retention	FALSE	canonical	3	5649	junction_3	1183.43013688552	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATTGTTGTCCTTTTCA	6837	False	NA	NA	False	NA	NA	NA	148989777	148985039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_148985724_148986536_148986712_148987104_148987562_148989709
34211	chr12	+	2095	16	NNC	ENSMUSG00000079108.7	novel	3642	16	NA	NA	280	-413	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_7	294.413360204096	2	50	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	55277232	55309392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296826_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
34212	chr17	-	2459	3	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-820	-16	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	93	84	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTCTCTTGACCGAAT	NA	False	NA	NA	False	NA	NA	NA	30846699	30841430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30842762_30845343_30846170_30846397
34213	chr12	-	1761	6	NNC	ENSMUSG00000076432.14	novel	2197	6	NA	NA	53	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	1348.972735084	2	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	21467536	21440329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448303_21466811_21467133_21467504
34214	chr13	-	3115	27	Antisense	novelGene_ENSMUSG00000041236.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	136	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCTGAGAGTCATGTGA	NA	False	NA	NA	False	NA	NA	NA	19050973	18901482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_18901514_18907362_18907395_18923609_18923715_18929429_18929508_18966813_18966890_18975754_18975819_18978494_18978557_18994600_18994721_18995735_18995882_18998394_18998462_19007947_19008045_19011771_19011901_19013391_19013513_19014909_19014974_19022835_19022877_19023810_19023900_19025332_19025414_19026318_19026451_19027638_19027782_19029475_19029518_19030054_19030107_19033054_19033197_19036514_19036562_19037512_19037658_19038694_19038830_19046701_19046883_19050280
34215	chr17	-	4598	1	Genic_Genomic	ENSMUSG00000054723.7	novel	NA	NA	NA	NA	-4387	-2110	mono-exon	FALSE	NA	NA	NA	NA	NA	9	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCGTCTGGGCGAACTCA	2136	False	NA	NA	False	NA	NA	NA	57029409	57024811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_57024800_57029400
34216	chr4	-	2502	11	NIC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-4	-10	combination_of_known_splicesites	TRUE	canonical	3	16	junction_8	206.167019670945	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAATAACTATCAGCTT	16	True	NA	NA	False	NA	NA	NA	48279562	48193332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48241295_48241336_48243476_48243550_48279383
34218	chr8	-	2368	5	Intergenic	novelGene_1695	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	69	junction_1	27.8511669414407	2	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCCATTTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	89779628	89772259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89774095_89774349_89774422_89775330_89775532_89776215_89776356_89779508
34220	chr4	+	2563	10	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	60.5042596194579	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99603902	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
34221	chr6	-	1577	12	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	287	junction_2	3224.65131179243	5	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTACTTGGTGTAATGC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
34222	chr2	+	1960	6	NNC	ENSMUSG00000027424.12	novel	2840	5	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_2	196.25126751183	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAGTCTTTCAGTGGAC	NA	False	NA	NA	False	NA	NA	NA	144112880	144122435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_144112993_144113834_144113972_144114078_144114405_144118234_144118452_144120913_144121047_144121400
34224	chr13	+	4156	2	FSM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	322	5	322	-5	multi-exon	FALSE	canonical	3	181	junction_1	0	395	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTACACTTGTGCCTCATT	NA	False	NA	NA	False	NA	NA	NA	41403641	41430048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41403791_41426041
34225	chr2	+	2018	9	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-2	-13	intron_retention	FALSE	non_canonical	0	0	junction_7	231.406568618957	5	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGGCAAAGTGTTCTT	667	False	NA	NA	False	NA	NA	NA	31462836	31507517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31505558_31505638_31506190
34226	chr8	+	2280	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	92	1100	5	-1100	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1911	False	NA	NA	False	NA	NA	NA	106937659	106978326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
34228	chr11	-	2105	11	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	-32	4	combination_of_known_splicesites	FALSE	canonical	3	51	junction_9	25.5305699113827	430	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAATGGCACCAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	106084430	106054151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077926_106078007_106084291
34229	chr6	-	3630	16	FSM	ENSMUSG00000030094.9	ENSMUST00000032182.5	3634	16	4	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	18.0017283120878	113	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGGCTGCAAATTTATT	373	False	NA	NA	False	NA	NA	NA	91492866	91466286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_91467249_91468202_91468293_91469252_91469347_91469823_91469994_91470086_91470222_91473069_91473152_91475011_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
34230	chr17	+	1677	3	NNC	ENSMUSG00000035868.10	novel	4354	6	NA	NA	21	-4976	intron_retention	FALSE	canonical	3	17	junction_1	10.5	20	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAGAGAAACAGAAATG	NA	False	NA	NA	False	NA	NA	NA	21869565	21876480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21869695_21871186_21871266_21875011
34231	chr14	+	1711	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	36	15	-16	-12	multi-exon	FALSE	canonical	3	2255	junction_1	40	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATGTTGATACACACGT	6575	False	NA	NA	False	NA	NA	NA	76741953	76745190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
34232	chr10	+	1670	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3384.30549069096	2	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATTTATGTCTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	127919178	127926137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127919323_127919760_127919944_127920165_127920322_127921026_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
34233	chr11	-	3033	6	NIC	ENSMUSG00000049321.18	novel	3069	6	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	28.5517074795887	122	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	50806977	50789538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_50792119_50796912_50796985_50801262_50801353_50801576_50801704_50803106_50803229_50806935
34234	chr2	+	2221	9	NNC	ENSMUSG00000000827.19	novel	985	9	NA	NA	9	497	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	338.667955931765	5	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACATCCATTTGTTTGGT	NA	False	NA	NA	False	NA	NA	NA	181139032	181158546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872_181157042_181157135
34235	chr5	-	2114	9	NNC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	245.173917862402	644	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAACTACCGTAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	32942975	32893653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_32893870_32893914_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
34236	chr10	+	2972	21	NIC	ENSMUSG00000033105.13	novel	4667	22	NA	NA	0	701	combination_of_known_splicesites	FALSE	canonical	2	7	junction_14	51.7483091511211	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGCCTTCCTGAGACA	NA	False	NA	NA	False	NA	NA	NA	76367440	76389768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
34237	chr1	+	4368	13	FSM	ENSMUSG00000042251.13	ENSMUST00000112393.9	6900	13	28	2504	11	-2504	multi-exon	FALSE	canonical	3	56	junction_3	6.31741420378799	2	129	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	131725146	131746695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131725325_131726333_131726421_131728831_131729065_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
34238	chr3	+	3814	1	Antisense	novelGene_ENSMUSG00000068921.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAAGCTCGGGTCGTGTGG	7031	False	NA	NA	False	NA	NA	NA	88853446	88857260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_88853400_88857300
34240	chr8	+	1088	1	Antisense	novelGene_ENSMUSG00000037070.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	396	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCTAGTTCCTCCACTTC	5967	False	NA	NA	False	NA	NA	NA	79231899	79232987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_79231900_79233000
34241	chr7	-	3094	6	NIC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	-4	-6	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	47.4189835403502	163	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCATCCATTCATCTGTT	NA	False	NA	NA	False	NA	NA	NA	25418435	25410536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25416278_25416425_25418342
34242	chr17	+	4065	1	NIC	ENSMUSG00000069135.12	novel	3505	13	NA	NA	10152	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	3	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTATCCTCCATTTTAC	NA	False	NA	NA	False	NA	NA	NA	8411230	8415295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_8411200_8415300
34243	chrX	-	2194	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	-52	74	-23	-74	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATGTTTCCCTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	51702850	51361376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
34244	chr16	-	4193	19	NIC	ENSMUSG00000022843.18	novel	3511	22	NA	NA	58	-4	intron_retention	FALSE	canonical	3	164	junction_12	31.7545077970372	77	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAATTAGCCACTCATGT	NA	False	NA	NA	False	NA	NA	NA	20534803	20521741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526942_20527043_20527217_20527383_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
34245	chr5	+	3015	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	55	8	55	-8	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	348	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTTTCTGAGACTTTA	NA	False	NA	NA	False	NA	NA	NA	88912909	88931132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
34246	chr2	+	1530	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	231	150	231	-150	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	685	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTACCATGGATGACACGG	NA	False	NA	NA	False	NA	NA	NA	143757470	143785094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
34247	chr3	-	2129	9	NIC	ENSMUSG00000040774.16	novel	2121	9	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_8	78.1548942805247	861	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTTTTTTCTCAATTTT	NA	False	NA	NA	False	NA	NA	NA	106454899	106410298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454738
34249	chr8	-	2595	6	ISM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	23237	21	-1012	-1	3prime_fragment	FALSE	canonical	3	124	junction_5	31.4515500412937	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGGTTTTCTTTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	122533071	122523072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685
34250	chr10	-	1683	9	NNC	ENSMUSG00000036112.16	novel	2551	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	738.260021520196	2	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGATACATTTTAATGTG	NA	False	NA	NA	False	NA	NA	NA	93725656	93696789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715569_93725571
34251	chr17	-	2338	16	NNC	ENSMUSG00000024039.16	novel	6226	17	NA	NA	11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	92.9139147574547	15	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGTCGTGTCGACCTT	1956	False	NA	NA	False	NA	NA	NA	31856128	31831617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841475_31843977_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
34252	chr16	+	3113	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	271	10	-14	-8	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	145	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTCTAACCTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	17326822	17344187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
34253	chr15	+	1918	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	24	4	-4	-4	multi-exon	FALSE	canonical	3	19	junction_1	0	297	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCTTGGCTGCATTTG	562	False	NA	NA	False	NA	NA	NA	100202665	100212232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100203226_100210874
34254	chr12	+	1641	6	NNC	ENSMUSG00000097055.3	novel	1431	4	NA	NA	-26918	-1485	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTTTGATCTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	21440405	21467536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21441417_21444965_21445065_21446284_21446346_21448261_21448365_21466797_21467132_21467503
34255	chr17	+	4739	24	NNC	ENSMUSG00000117440.2	novel	1964	2	NA	NA	-8791	39452	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	62	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTCACCCGCAGCAGCCG	NA	False	NA	NA	False	NA	NA	NA	80545739	80597566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_80546354_80549370_80549577_80553098_80553237_80554535_80554615_80555701_80555834_80557280_80557365_80557447_80557543_80558658_80558938_80560515_80560717_80561693_80561868_80562980_80563077_80565501_80565618_80567647_80567857_80571373_80571431_80572503_80572639_80574943_80575069_80576180_80576379_80577796_80577917_80580357_80580539_80582191_80583030_80583276_80583465_80585651_80585810_80588623_80588856_80597482
34256	chr3	+	1801	4	ISM	ENSMUSG00000028156.13	ENSMUST00000200100.2	729	6	23000	-1231	-559	691	3prime_fragment	FALSE	canonical	3	1816	junction_2	177.04425058913	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACTTATATTGGTCAATT	NA	False	NA	NA	False	NA	NA	NA	138256056	138262666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_138256088_138256653_138256768_138259342_138259483_138261150
34257	chr7	-	2341	9	NIC	ENSMUSG00000003438.18	novel	1515	11	NA	NA	-9	-20	intron_retention	FALSE	canonical	3	2125	junction_7	164.492211061801	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGAGGGCTGTCAGCCTA	2682	False	NA	NA	False	NA	NA	NA	28011471	28004960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28005456_28005847_28005955_28006246_28007077_28007169_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
34259	chr11	-	2930	12	NIC	ENSMUSG00000000384.16	novel	2347	13	NA	NA	6	-9	intron_retention	FALSE	canonical	3	74	junction_1	139.502895494107	36	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCACCACATGGGCCAC	NA	False	NA	NA	False	NA	NA	NA	6576061	6565607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6571066_6573815_6574284_6575148_6575214_6575964
34260	chr11	+	3045	6	NNC	ENSMUSG00000046311.14	novel	880	6	NA	NA	264	-228	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	46.1926401064066	2	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAAAAAAGCCATATCGA	1872	False	NA	NA	False	NA	NA	NA	49094824	49108362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_49095038_49103521_49103604_49104416_49104470_49105049_49105146_49105352_49105482_49105890
34261	chr2	+	3549	3	FSM	ENSMUSG00000048550.18	ENSMUST00000054591.10	3899	3	24	326	9	307	multi-exon	FALSE	canonical	3	53	junction_1	4.5	93	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATATCAGCTCTCTGGTT	4808	False	NA	NA	False	NA	NA	NA	21210558	21219494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_21210657_21214695_21214853_21216200
34264	chr10	-	4412	1	Antisense	novelGene_ENSMUSG00000112227.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	87	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTGGAGCTGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	15672031	15667619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_15667600_15672000
34265	chr19	+	1771	9	Antisense	novelGene_ENSMUSG00000010095.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGAGGCGTCCCGTGGCCG	NA	False	NA	NA	False	NA	NA	NA	8684933	8691186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_8685437_8685562_8685642_8686368_8686508_8686591_8686774_8686912_8686976_8687080_8687149_8689211_8689292_8690092_8690272_8690708
34267	chr3	+	2014	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	43	0	43	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1933	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4650	False	NA	NA	False	NA	NA	NA	34704596	34706610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34704600_34706600
34269	chr14	-	2175	11	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11269	19820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTTGGGAGGTGGGGCGA	NA	False	NA	NA	False	NA	NA	NA	19861854	19841598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19841717_19847228_19847341_19848458_19848712_19852403_19852633_19853122_19853292_19855367_19855491_19855904_19856080_19857992_19858149_19860046_19860170_19861019_19861134_19861251
34272	chr6	-	2595	12	Antisense	novelGene_ENSMUSG00000029670.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	179	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGGCTCCACTTTGGC	NA	False	NA	NA	False	NA	NA	NA	21974901	21949608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_21949791_21950034_21950109_21952127_21952229_21953761_21953826_21965730_21965830_21967625_21967698_21968916_21969002_21969274_21969433_21969907_21970107_21971105_21971305_21971806_21971849_21973581
34273	chr18	+	2009	15	ISM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	11998	698	-15	-1	3prime_fragment	FALSE	canonical	3	722	junction_11	88.1560536544052	1	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTTGTCTGATTTTGCC	2367	False	NA	NA	False	NA	NA	NA	24749015	24771866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
34274	chr1	+	2283	8	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	4	junction_7	69.1452183776275	502	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	NA	False	NA	NA	NA	165957980	165994079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992854_165992911
34275	chr10	-	2080	11	NIC	ENSMUSG00000019814.6	novel	2297	11	NA	NA	-367	-463	combination_of_known_junctions	FALSE	canonical	1	3	junction_10	219.769333620503	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAACGGAATTGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	13068539	13054346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068152
34276	chr7	+	1791	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-21	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	3	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCAGACTTGCTGTGAG	349	False	NA	NA	False	NA	NA	NA	44465785	44480227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478021_44478668
34277	chr3	+	1884	13	NIC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-19	-1	combination_of_known_splicesites	FALSE	canonical	3	24	junction_11	397.893227930978	8	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAAGCGTGCTGGATTTG	NA	False	NA	NA	False	NA	NA	NA	32762679	32781116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32779395_32779483_32780670
34279	chr1	+	3226	11	NIC	ENSMUSG00000041684.12	novel	3570	10	NA	NA	107	7	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	15.8820653568735	4	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTATGAATTTTAATGTCT	NA	False	NA	NA	False	NA	NA	NA	44158774	44183677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_44158890_44159333_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
34280	chr16	-	1887	2	NNC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	19221	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	16971998	16969878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16971192_16971424
34281	chr11	-	2053	7	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	269	-16	intron_retention	FALSE	canonical	3	232	junction_1	25.5304828696121	66	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGATTGCATAATATCT	NA	False	NA	NA	False	NA	NA	NA	77784653	77771456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_77772081_77772326_77772403_77772943_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
34283	chr8	+	1423	3	Intergenic	novelGene_1701	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAGGAATCCTGAAAGTC	NA	False	NA	NA	False	NA	NA	NA	89774355	89779675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_89775532_89776215_89776355_89779567
34284	chr1	-	2138	1	Genic_Genomic	ENSMUSG00000026281.16	novel	NA	NA	NA	NA	5774	1486	mono-exon	FALSE	NA	NA	NA	NA	NA	7	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCTTATGCTCACATCTG	NA	False	NA	NA	False	NA	NA	NA	93720949	93718811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_93718800_93720900
34285	chr14	+	4059	11	NNC	ENSMUSG00000022009.2	novel	3974	10	NA	NA	0	145	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	147.797462765773	1020	81	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTTATAAGAGTTGCCT	NA	False	NA	NA	False	NA	NA	NA	76348330	76374964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225_76372912_76372971
34286	chr6	-	1374	11	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	82	0	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2039.79651926363	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446670	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
34287	chr6	-	4065	2	FSM	ENSMUSG00000029708.10	ENSMUST00000090511.4	4650	2	7	578	7	-578	multi-exon	FALSE	canonical	3	46	junction_1	0	57	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATGGTGGTGTCTATAC	-6	True	NA	NA	False	NA	NA	NA	28421716	28416667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_28419300_28420283
34288	chr9	-	3002	3	ISM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	342	0	41	0	intron_retention	FALSE	canonical	3	233	junction_2	13.5	6	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGAACCTTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	35481352	35472115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_35473401_35475358_35475474_35479750
34289	chr7	+	2196	2	NNC	ENSMUSG00000100153.3	novel	1437	2	NA	NA	-3	6	intron_retention	FALSE	non_canonical	0	0	junction_1	0	702	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAACGTGGAGC	NA	False	NA	NA	False	NA	NA	NA	119339145	119341455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_119339206_119339319
34292	chr10	+	2379	8	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	400.663276610784	52	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	NA	False	NA	NA	NA	72490692	72510796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509236
34293	chr18	+	2163	6	NNC	ENSMUSG00000073568.3	novel	2257	5	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	115.278792498881	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAAAGCTGGGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	47054888	47067286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472_47065832_47065905
34294	chr11	-	3389	12	NNC	ENSMUSG00000006930.16	novel	3316	12	NA	NA	-1	-2	intron_retention	FALSE	non_canonical	2	17	junction_1	164.197270993317	18	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCCTGTCTCAGTTGTG	2047	False	NA	NA	False	NA	NA	NA	100246914	100238154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100238491_100238752_100240446_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515
34298	chr15	-	1770	11	NNC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	436.584573708234	20	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGAAGTCCCTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	75952736	75942037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943615_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
34299	chr4	-	1751	3	FSM	ENSMUSG00000003038.16	ENSMUST00000145025.8	2159	3	649	-241	-8	-12	multi-exon	FALSE	canonical	3	2248	junction_2	483	7	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTTGGAATGCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	133694570	133692060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133692885_133693261_133693358_133693739
34300	chr10	-	1981	7	NNC	ENSMUSG00000000902.14	novel	1660	9	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	472.896541422	2	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGTGCAGTAGCATAAA	6903	False	NA	NA	False	NA	NA	NA	75757409	75732606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75732923_75733278_75733411_75739581_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75757136
34301	chr1	+	1192	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111228.2	716	5	-14	-462	-14	-185	multi-exon	FALSE	canonical	2	5	junction_1	495.253975249064	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTTACCACACGTCTGG	NA	False	NA	NA	False	NA	NA	NA	172328804	172334762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172328882_172332686_172332895_172333327_172333503_172333752_172333856_172334133
34303	chr5	-	1851	2	Genic_Genomic	ENSMUSG00000080935.4	novel	1293	1	NA	NA	-5	993	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGGGT	1790	False	NA	NA	False	NA	NA	NA	138363819	138361528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_138362548_138362987
34304	chr7	+	2067	16	NNC	ENSMUSG00000001829.18	novel	4627	16	NA	NA	3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	198.959694410702	40	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCTTGCCCTCATGCCT	NA	False	NA	NA	False	NA	NA	NA	101312966	101437021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434651_101435344_101435381_101435493_101435614_101435852_101435958_101436711
34305	chr15	+	1623	14	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	48	236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	310.732176008698	1	43	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTTTCTAAACTTTTTT	NA	False	NA	-46	True	NA	NA	NA	101982346	102003870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997472_101998464_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003810
34306	chr4	+	3119	9	FSM	ENSMUSG00000039768.17	ENSMUST00000139555.8	3841	9	-5	727	-5	-727	multi-exon	FALSE	canonical	3	755	junction_7	72.2236110977567	10	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGTTTAAAAGATTTAT	9105	False	NA	NA	False	NA	NA	NA	152018182	152060414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216
34307	chrX	+	2492	14	Antisense	novelGene_ENSMUSG00000036916.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAACCTCCTTGCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	47639003	47681270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_47639239_47642855_47642989_47647147_47647291_47647917_47648021_47648543_47648700_47652556_47652780_47655584_47655690_47655820_47655989_47657995_47658103_47661157_47661290_47661619_47661689_47667256_47667407_47677579_47677627_47680549
34308	chr17	-	3548	7	FSM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	64	501	-40	-8	multi-exon	FALSE	canonical	3	48	junction_4	5.17740818900302	76	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAAATGTATTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	59320303	59307113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849_59317440_59318037_59318250_59320212
34310	chr18	-	1624	3	Antisense	novelGene_ENSMUSG00000001473.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGCACAATCTCCCTCA	NA	False	NA	NA	False	NA	NA	NA	67535819	67523848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_67523887_67525980_67526126_67534378
34314	chr8	-	1599	1	Antisense	novelGene_ENSMUSG00000071041.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCACGGAGGAAGACAGAC	NA	False	NA	NA	False	NA	NA	NA	100758788	100757189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_100757200_100758800
34317	chr5	-	2025	11	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-25	0	intron_retention	FALSE	canonical	3	174	junction_10	71.0850898571564	1079	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTTCCGTCTTACTA	NA	False	NA	NA	False	NA	NA	NA	34794429	34790991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
34319	chr5	+	3110	7	NNC	ENSMUSG00000029177.10	novel	1007	7	NA	NA	3	-16	intron_retention	TRUE	non_canonical	0	0	junction_1	779.245022798064	1	62	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAGGAAGAAAAACCTGAA	9189	False	NA	NA	False	NA	NA	NA	30824243	30831706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30825491_30825654_30826251_30826592_30827173_30829807_30829915_30830325_30830404_30830610_30830788_30831381
34320	chr1	-	3152	8	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	-163	-2	intron_retention	FALSE	canonical	3	87	junction_7	17.6265106459282	1	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGCTCTTTACTATTC	5452	False	NA	NA	False	NA	NA	NA	171108497	171104566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247
34321	chr1	+	1806	10	NNC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	166.187607804115	1599	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATCATTGTCGTCGTG	8185	False	NA	NA	False	NA	NA	NA	134333732	134339472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134335744_134336141_134336226_134337338_134337425_134338230_134338331_134338644
34322	chr2	+	2541	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	-3	75	-3	-75	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	2	95	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGTCTAATTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	34662103	34666468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
34323	chr2	+	2118	14	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	23	-7	combination_of_known_splicesites	FALSE	canonical	3	18	junction_6	158.919241892815	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCCAGATATTTTACTC	NA	False	NA	NA	False	NA	NA	NA	174257619	174269288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
34324	chr16	-	5512	3	FSM	ENSMUSG00000039789.8	ENSMUST00000119599.3	1842	3	50	-3720	-6	-42	multi-exon	FALSE	canonical	3	18	junction_2	4	20	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAATAAATGTTGTGATG	4440	False	NA	NA	False	NA	NA	NA	3702375	3679433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_3684595_3689013_3689141_3702151
34326	chr16	-	3369	3	NIC	ENSMUSG00000022890.14	novel	809	5	NA	NA	35	-1	intron_retention	FALSE	canonical	3	5740	junction_2	178	21	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATGTCCTTTAAATTC	NA	False	NA	NA	False	NA	NA	NA	84631858	84624759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_84624884_84625312_84628396_84631696
34328	chrX	-	1972	10	NNC	ENSMUSG00000016534.16	novel	1769	9	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	310.745340538948	223	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTGTTTCAATTTGT	NA	False	NA	NA	False	NA	NA	NA	37545325	37493940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37494449_37510517_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
34329	chr11	-	3401	6	FSM	ENSMUSG00000000120.7	ENSMUST00000000122.7	3446	6	38	7	38	-7	multi-exon	FALSE	canonical	3	62	junction_2	5.88557558782486	180	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAACGATGCCA	NA	False	NA	NA	False	NA	NA	NA	95478523	95459650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
34330	chr17	+	2102	11	NNC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	-5	-935	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	168.48445032109	104	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGCAATCTGTAGTTCT	NA	False	NA	NA	False	NA	NA	NA	17594846	17614226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17594933_17597007_17597101_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
34331	chr15	-	949	9	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	51	4180	35	59	5prime_fragment	FALSE	canonical	3	1461	junction_3	112.544921586893	7	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGCATGAGTGTTGTCAG	2796	False	NA	NA	False	NA	NA	NA	77854962	77847377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
34333	chr12	+	1556	12	NNC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	709.986089958025	5075	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGAAGAGTTCATTTT	3962	False	NA	NA	False	NA	NA	NA	100076401	100089664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085388_100085433_100085522_100086245_100086398_100087251_100087407_100089316
34334	chr7	-	1815	10	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	341.645076101927	53	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACAAACTGAGATTGGTT	NA	False	NA	NA	False	NA	NA	NA	143102835	143067327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143083206_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
34335	chr5	-	4329	18	FSM	ENSMUSG00000036553.17	ENSMUST00000201511.2	4246	18	-81	-2	-81	0	multi-exon	FALSE	canonical	3	51	junction_17	16.3400287573917	120	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTATCTTCTAGGTGT	NA	False	NA	NA	False	NA	NA	NA	35897412	35854524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35897301
34337	chr14	-	972	6	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1305.31553273528	2	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731817_63735046_63735090_63737569_63737770_63746158
34338	chr1	+	2696	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	63	635	-2	-635	multi-exon	FALSE	canonical	3	212	junction_6	847.519796556727	1	101	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTTCAAGCTAGCTGG	NA	False	NA	NA	False	NA	NA	NA	87141698	87167575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
34339	chr7	+	1461	1	FSM	ENSMUSG00000083396.2	ENSMUST00000121585.2	1194	1	-110	-157	-110	157	mono-exon	FALSE	NA	NA	NA	NA	NA	527	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCTCTGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140470689	140472150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140470700_140472200
34340	chr7	+	734	1	NIC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	2920	646	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTTCATGCACACAGGAA	NA	False	NA	NA	False	NA	NA	NA	46501330	46502064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46501300_46502100
34341	chr9	-	3504	13	FSM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	128	0	-13	0	multi-exon	FALSE	canonical	2	8	junction_11	4.65698400254929	68	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATGCACAGTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	37058575	36802277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502_36994573_37058536
34342	chr11	-	2099	15	Genic_Genomic	ENSMUSG00000034493.2	novel	1220	2	NA	NA	-2438	-26460	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTACTTCCTCCCGCA	2824	False	NA	NA	False	NA	NA	NA	3929216	3914000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_3914058_3918259_3918337_3919425_3919585_3920622_3920742_3923200_3923367_3923446_3923520_3925516_3925644_3925737_3925813_3926032_3926121_3926286_3926425_3926775_3926895_3927012_3927206_3927628_3927782_3927868_3928032_3928824
34343	chr8	-	2705	6	ISM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	5759	8	-1353	-8	3prime_fragment	FALSE	canonical	1	150	junction_2	126.760561690141	2	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAACAATGCTAGAATATA	NA	False	NA	NA	False	NA	NA	NA	110329496	110320116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054
34345	SIRV6	+	1975	1	FSM	SIRV6A	SIRV603	1969	1	-6	0	-6	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	NA	NA	NA	8993	10968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_9000_11000
34346	chr1	-	2031	15	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	21	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	689.425167240426	1	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGATAGTGTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	128345075	128291447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294721_128294770_128296101_128296200_128299905_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
34348	chr7	-	3027	17	NNC	ENSMUSG00000038520.16	novel	8750	17	NA	NA	-716	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.0510180010621	9	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGACTGCGCTGGCTGGC	6983	False	NA	NA	False	NA	NA	NA	44499219	44490461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44490842_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492880_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
34349	chr16	+	1598	2	Antisense	novelGene_ENSMUSG00000005580.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAATTTGGGGTCCCACCAC	NA	False	NA	NA	False	NA	NA	NA	4141630	4237123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_4141820_4235714
34351	chr11	-	2871	4	NNC	ENSMUSG00000035455.13	novel	2961	3	NA	NA	2	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.12825877028341	1	125	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGAGAATAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	11758930	11750408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11753064_11756174_11756216_11758021_11758161_11758894
34352	chr11	+	2087	10	FSM	ENSMUSG00000001755.13	ENSMUST00000001806.10	2138	10	50	1	-3	-1	multi-exon	FALSE	canonical	3	106	junction_1	26.2908705931015	572	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGTGGTTTTCTGT	3561	False	NA	NA	False	NA	NA	NA	100973440	100977444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
34353	chr5	+	2855	5	NIC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-1	-160	intron_retention	FALSE	canonical	3	98	junction_4	6.17960354715414	355	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCTAGAGATGTAGAGCAC	3416	False	NA	NA	False	NA	NA	NA	134961225	134971331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
34354	chr8	-	2367	4	NNC	ENSMUSG00000050052.13	novel	373	4	NA	NA	12	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	134.032334407286	126	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGAGATTCTTTAGTGTG	4826	False	NA	NA	False	NA	NA	NA	14024731	14002015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_14003842_14003883_14004136_14005719_14005818_14024540
34355	chr8	-	2618	14	NNC	ENSMUSG00000038225.16	novel	1833	14	NA	NA	-16	681	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	39.8802942544621	126	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCAAGGCCGATCTTGAT	NA	False	NA	NA	False	NA	NA	NA	47070263	47031216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47032202_47034472_47034520_47034602_47034770_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
34356	chr11	-	2864	1	Antisense	novelGene_ENSMUSG00000093483.2_AS_novelGene_ENSMUSG00000065715.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	206	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTCCGCCTCTTCGGGC	6779	False	NA	NA	False	NA	NA	NA	83185415	83182551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_83182600_83185400
34357	chr13	-	4008	16	FSM	ENSMUSG00000021375.12	ENSMUST00000223881.2	3917	16	-92	1	-92	-1	multi-exon	FALSE	canonical	3	34	junction_2	16.4059609762902	59	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCAAAGTGTTGATCGT	NA	False	NA	NA	False	NA	NA	NA	46940206	46902571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_46904103_46905556_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988
34358	chr6	-	2138	11	NIC	ENSMUSG00000001518.13	novel	2320	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	13	junction_8	79.0465685529739	9	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	NA	False	NA	NA	NA	128401881	128386406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128393219_128393262_128394579_128394676_128401680
34361	chr6	+	1693	9	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	5398	-45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	279.047011048318	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTGTGCATACATATGAAA	417	False	NA	NA	False	NA	NA	NA	125114393	125121671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125114474_125114597_125114692_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
34362	chr17	-	2019	15	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCCTGGCCTCCCGGAAA	NA	False	NA	NA	False	NA	NA	NA	56629711	56611347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56611397_56612088_56612249_56616334_56616578_56617673_56617837_56619053_56619265_56619859_56619967_56620040_56620251_56622190_56622314_56622396_56622505_56622774_56622889_56624018_56624113_56624991_56625149_56625244_56625377_56627153_56627247_56629656
34364	chr4	-	2059	3	FSM	ENSMUSG00000028675.13	ENSMUST00000142585.2	630	3	-20	-1409	-20	3	multi-exon	FALSE	canonical	1	2	junction_2	185.5	44	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTTTTTATGTAAGTGA	NA	False	NA	NA	False	NA	NA	NA	135600901	135598225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135599766_135600205_135600411_135600587
34365	chr14	-	1590	9	NNC	ENSMUSG00000067995.5	novel	1467	8	NA	NA	-55	3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	227.909213010356	2280	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGGCAACTGTTATCACT	NA	False	NA	NA	False	NA	NA	NA	76248360	76134373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76216128_76216194_76232860_76233006_76234348_76234368_76245144_76245219_76248119
34366	chr1	+	3837	15	NNC	ENSMUSG00000026048.17	novel	3907	15	NA	NA	-10	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	38.3661202582887	76	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTACATAAAAGTACATCT	NA	False	NA	NA	False	NA	NA	NA	44187058	44220399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218303_44218392_44219690
34367	chrX	-	1820	10	NNC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	-2247	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	378.276239777556	2	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTGTGAGATGAGGG	2101	False	NA	NA	False	NA	NA	NA	94996911	94978930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979167_94981027_94981129_94983904_94984430_94990022_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827
34369	chr2	-	4224	8	Antisense	novelGene_ENSMUSG00000000826.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	114	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTAGCAGCGGCAGAGGAC	8331	False	NA	NA	False	NA	NA	NA	181194679	181162378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_181162489_181163025_181163080_181188161_181188280_181189130_181189352_181190459_181190634_181190716_181190794_181191063_181191811_181191956
34370	chr4	-	3776	1	Antisense	novelGene_ENSMUSG00000043572.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCAAAGCCAGTGCGCCTG	NA	False	NA	NA	False	NA	NA	NA	106512082	106508306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_106508300_106512100
34371	chr5	-	1617	10	NNC	ENSMUSG00000040013.12	novel	1447	9	NA	NA	-1765	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	318.477667492335	1527	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGTATGCAGTACAATTCA	NA	False	NA	NA	False	NA	NA	NA	135380663	135320560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788_135378911_135380502
34372	chr12	+	1495	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	2	-110	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1908.10962997413	1	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTACCTTTTAAATTATT	NA	False	NA	NA	False	NA	NA	NA	24758241	24764035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763357_24763942
34373	chr11	-	2265	1	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	25877	26	2218	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	50	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCGCTTTATTTTTATT	NA	False	NA	2	True	NA	NA	NA	97052830	97050565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97050600_97052800
34374	chr4	+	2401	6	ISM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	170998	0	98	0	3prime_fragment	FALSE	canonical	3	246	junction_1	21.0428135001002	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	85294675	85307617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790
34375	chr18	+	2431	16	NIC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_5	51.8457541388128	151	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	75151807	75420035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
34377	chr10	-	2843	6	ISM	ENSMUSG00000020130.10	ENSMUST00000217843.2	1641	12	10379	-938	-1641	-586	3prime_fragment	FALSE	canonical	3	420	junction_4	41.8263075109434	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTTTCAGTTACA	NA	False	NA	NA	False	NA	NA	NA	115047234	115034362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100
34378	chr6	-	2457	14	NIC	ENSMUSG00000004266.16	novel	2219	16	NA	NA	16	1	intron_retention	FALSE	canonical	3	99	junction_8	23.5535396653928	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGCCTCCAAGTCTGT	8746	False	NA	NA	False	NA	NA	NA	124710101	124697681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124698186_124698538_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
34379	chr1	-	1073	4	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1954	801	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.815214097257	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTGAATGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	132206195	132201652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_132201719_132201783_132202560_132202761_132202875_132206077
34381	chr1	-	1287	1	Intergenic	novelGene_442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCAGGCCCCCTAGGCTT	2452	False	NA	NA	False	NA	NA	NA	132197860	132196573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_132196600_132197900
34382	chr4	+	2527	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	68.1193805021743	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAGAGTTGTTGAGGTCA	8303	False	NA	NA	False	NA	NA	NA	156194486	156211715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
34383	chr5	+	2017	13	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	436	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1254.49893439129	1	86	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGCTACTGGATCATT	NA	False	NA	NA	False	NA	NA	NA	129864497	129875192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129866167_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
34384	chr2	-	3604	20	FSM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	74	8	19	-7	multi-exon	FALSE	canonical	3	65	junction_16	14.3132737727671	81	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACCACCTTTGGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	132420079	132371009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414175_132419987
34385	chr17	-	2856	6	NIC	ENSMUSG00000052752.16	novel	2384	19	NA	NA	55	1	intron_retention	FALSE	canonical	3	421	junction_5	39.4593461679233	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTGTGGAGACAGCTTC	6352	False	NA	NA	False	NA	NA	NA	24731291	24727826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24730674_24730749_24730799_24730986
34387	chr2	-	1839	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	84	0	17	0	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	1407	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5965	False	NA	NA	False	NA	NA	NA	163913005	163895459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
34388	chr3	-	1978	13	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	396.813794493085	6	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	NA	False	NA	NA	NA	157630700	157599884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624169_157625383_157625565_157625653_157625750_157626591_157626674_157630502
34391	chr4	+	1029	4	Antisense	novelGene_ENSMUSG00000028639.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1049	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCGCACCCTACAAAAGT	1719	False	NA	NA	False	NA	NA	NA	119135177	119139635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_119135565_119136130_119136396_119138765_119138849_119139341
34392	chr17	-	2509	2	NIC	ENSMUSG00000067148.16	novel	740	4	NA	NA	-14	-40	intron_retention	FALSE	canonical	3	723	junction_1	0	4	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTGTTGTAAATAAATTGC	NA	False	NA	NA	False	NA	NA	NA	46558908	46554885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46557141_46558654
34394	chr7	+	1943	7	NIC	ENSMUSG00000030990.19	novel	1253	8	NA	NA	7	2	combination_of_known_junctions	FALSE	canonical	3	4	junction_3	72.4217969030503	27	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTGAGGTAGGTATGTT	666	False	NA	NA	False	NA	NA	NA	101872306	101887769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101872358_101875477_101875653_101884868_101884967_101885300_101885554_101885654_101885750_101886328_101886438_101886607
34395	chr8	+	2656	6	NIC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	11	junction_4	344.040927797842	52	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTAGTGTTTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	61343484	61360614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61357033_61357122_61358581
34396	chr5	+	2130	4	Antisense	novelGene_ENSMUSG00000080002.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	2.16024689946929	14	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAATCTAGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	149578276	149588371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_149578509_149584119_149584669_149586911_149588209_149588319
34398	chr9	-	2976	5	NIC	ENSMUSG00000032515.9	novel	2906	5	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	4.71036092035419	257	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	119813807	119800228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813699
34401	chr11	+	3289	10	NNC	ENSMUSG00000078700.11	novel	3542	7	NA	NA	-8432	-36995	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAACAAACCGGCCTCCTT	9419	False	NA	NA	False	NA	NA	NA	96798663	96807297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96798952_96799058_96799746_96800763_96800856_96801482_96801564_96801904_96802835_96803041_96803880_96804206_96804316_96804492_96804623_96806976_96807026_96807212
34402	chr2	+	1909	14	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-435	intron_retention	FALSE	canonical	3	800	junction_1	81.5756809102831	2190	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	164675725	164681504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
34403	chr7	-	3639	7	FSM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	29	41	29	-41	multi-exon	FALSE	canonical	3	19	junction_4	11.5854314646552	69	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGAGGCTTACCATAATA	NA	False	NA	NA	False	NA	NA	NA	12514552	12502059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039_12509586_12514498
34405	chr3	-	322	2	ISM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	399	8648	399	2056	5prime_fragment	FALSE	canonical	3	777	junction_1	0	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAATTATTTCCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	32790897	32788193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_32788409_32790790
34406	chr5	-	1239	1	FSM	ENSMUSG00000094708.2	ENSMUST00000180167.2	1002	1	-73	-164	-73	164	mono-exon	FALSE	NA	NA	NA	NA	NA	3	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTCGCTGCACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	106011641	106010402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_106010400_106011600
34408	chr9	+	1985	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	1	1	1	-1	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	2232	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTCTGATTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	65537841	65567807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
34410	chr1	+	2993	5	NIC	ENSMUSG00000026172.13	novel	1679	8	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	106	junction_1	19.1441897190766	18	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCAGGTACCTACAAGA	1215	False	NA	NA	False	NA	NA	NA	74627531	74631344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74629038_74629118_74629259_74629423_74630289_74630747_74630866_74630980
34411	chr16	+	2029	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	33	8	33	-8	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	1999	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTCTTCTGTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	31767363	31777282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
34412	chr10	-	2680	3	NIC	ENSMUSG00000061904.13	novel	1395	8	NA	NA	-367	0	intron_retention	FALSE	canonical	3	3880	junction_2	349	18	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90956066	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90952987_90953074_90954743_90955388
34413	chr4	+	2559	8	ISM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	25	271	-16	-271	intron_retention	FALSE	canonical	3	1317	junction_7	94.8749983194859	46	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGCTTCTGAAATGTTGG	NA	False	NA	NA	False	NA	NA	NA	132495670	132505792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963
34414	chr1	+	1711	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	-5	4	-2	-4	multi-exon	FALSE	canonical	3	512	junction_1	10.5	409	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAAGAGTGTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	16735428	16748495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_16735730_16737891_16737998_16747191
34415	chr2	+	3136	2	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	0	0	intron_retention	FALSE	canonical	3	102	junction_1	0	2	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3442	False	NA	NA	False	NA	NA	NA	91541266	91551890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91543211_91550698
34416	chr9	+	2119	8	NIC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	0	-13	intron_retention	FALSE	canonical	3	166	junction_4	16.1042521954765	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTTACTTGCTATGGTC	NA	False	NA	NA	False	NA	NA	NA	108174120	108179488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
34417	chr5	+	2125	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	97	-1	-41	1	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	728	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCAATTTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	21850973	21867693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
34418	chr12	+	1361	5	Antisense	novelGene_ENSMUSG00000076432.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	528	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTAGCGCTCGGCCTGCTCG	NA	False	NA	NA	False	NA	NA	NA	21440676	21467034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_21441417_21444965_21445065_21446284_21446449_21448243_21448365_21466797
34420	chr3	+	2395	1	NIC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	21294	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGTAAGCAGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	34122074	34124469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34122100_34124500
34421	chr6	+	1474	5	ISM	ENSMUSG00000030276.20	ENSMUST00000204026.3	1472	6	3842	-284	-58	284	3prime_fragment	FALSE	canonical	3	18	junction_1	3.03108891324554	3	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGAAGAGGCCCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	113370062	113376715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730
34423	chr11	+	845	1	Genic_Genomic	ENSMUSG00000083899.3	novel	NA	NA	NA	NA	2112	502	mono-exon	FALSE	NA	NA	NA	NA	NA	17	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77186381	77187226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_77186400_77187200
34425	chr8	+	2296	13	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	-4	-275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	381.617928110768	1	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAACTCAAAATTTGTCA	2139	False	NA	NA	False	NA	NA	NA	13388786	13428167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13407042_13407103_13412268_13412378_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
34427	chr3	-	2833	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	521	7	0	-7	multi-exon	FALSE	canonical	3	215	junction_1	1	635	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTTCATGATGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	135129165	135112179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_135114652_135116771_135116987_135129019
34428	chr1	+	1502	7	Fusion	ENSMUSG00000053332.14_ENSMUSG00000065228.3	novel	539	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	3576	junction_1	823.41269860394	31	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862736	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160865118_160865564_160865608_160865794
34429	chr1	-	5555	24	NNC	ENSMUSG00000040297.13	novel	6327	24	NA	NA	30	-734	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	35.5783966226443	96	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCACTGGCTCTTCTG	448	False	NA	NA	False	NA	NA	NA	161704221	161644416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680509_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
34430	chr4	+	1610	2	ISM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	33157	-16	9462	16	3prime_fragment	FALSE	canonical	3	329	junction_1	0	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTTTTTAGTGCCCAGG	NA	False	NA	NA	False	NA	NA	NA	116448011	116451095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116448529_116450002
34431	chr9	-	2935	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-3	5	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	536	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTGCATGGTGTGATC	NA	False	NA	NA	False	NA	NA	NA	114469255	114414940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
34433	chr10	-	1127	7	Antisense	novelGene_ENSMUSG00000005683.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGGGGTTCTTCTCCACC	NA	False	NA	NA	False	NA	NA	NA	128197080	128188622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128188673_128188889_128189079_128194200_128194401_128195036_128195167_128195300_128195403_128195810_128196021_128196834
34434	chr3	+	2128	5	NIC	ENSMUSG00000037661.15	novel	2213	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	102.806857747915	282	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30910098	30951339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_30910207_30931383_30931711_30944090_30944191_30948277_30948390_30949858
34435	chr13	+	3111	9	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	16	-2788	intron_retention	FALSE	canonical	3	551	junction_5	40.7430975749267	1	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGTTTTCTCAGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	107083701	107093480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183
34436	chr2	+	1678	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9597	122	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	195	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCCAGATCTCATTACG	NA	False	NA	NA	False	NA	NA	NA	162873959	162888183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
34437	chr8	+	3377	6	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21078	9477	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	12.4354332453679	154	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGAAGTTTCTTCAAC	5311	False	NA	NA	False	NA	NA	NA	20555621	20593814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20555835_20576529_20576922_20584150_20584338_20588008_20588273_20590632_20590713_20591573
34438	chr1	+	2873	14	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-16	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	152.071611906789	1	104	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCTGGGAAGTTTAAAT	9750	False	NA	NA	False	NA	NA	NA	175708343	175736297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708921_175710460_175710635_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720646_175721326_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
34439	chr4	-	1983	9	NIC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	-2	-18	intron_retention	FALSE	canonical	3	822	junction_8	199.129629575812	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTTCCTTGTCAGGCAT	6407	False	NA	NA	False	NA	NA	NA	129494411	129485770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129485928_129486059_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
34440	chr16	+	1612	7	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-2	38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	325.576923834189	5	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	38383220	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383410_38384476_38384664_38393415_38393572_38405582_38405881_38406582_38406771_38408544_38408666_38411273
34441	chr17	-	2362	11	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-30	-1	intron_retention	FALSE	canonical	0	0	junction_9	192.007838381666	3	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGTGTGCGAGTCATC	NA	False	NA	NA	False	NA	NA	NA	57318318	57310405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57310632_57310720_57310812_57310914_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314907_57316687_57316753_57317975_57318023_57318108
34442	chr15	+	1642	6	Antisense	novelGene_ENSMUSG00000022362.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1130	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGAGCGGCACCGGCGCGC	NA	False	NA	NA	False	NA	NA	NA	57885671	57897711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_57886278_57888669_57888802_57892008_57892444_57894355_57894497_57895379_57895476_57897479
34443	chr13	-	1022	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	49	1482	1	-1482	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	6486	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTGTTATCTTTCC	NA	False	NA	NA	False	NA	NA	NA	38842985	38829664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
34445	chr2	+	1427	14	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	93	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	800.458581582084	3	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360311	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31400139_31400254_31404690_31404848_31408737_31408804_31410383
34446	chrM	+	527	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	160	-3	160	3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	134	False	NA	NA	False	NA	NA	NA	7172	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7200_7700
34447	chr17	+	1560	9	NIC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	1549	0	intron_retention	FALSE	canonical	3	220	junction_3	40.4612082740988	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	57074282	57076841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076439_57076533_57076663_57076735
34448	chr13	+	1055	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	171	0	-30	0	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	4389	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAATAGTCTGGAACATT	NA	False	NA	NA	False	NA	NA	NA	81931366	81945274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
34449	chr13	+	3249	13	Antisense	novelGene_ENSMUSG00000116016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	175	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTCGGTACTTTGAATA	NA	False	NA	NA	False	NA	NA	NA	111562315	111626312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111563186_111570081_111570185_111572930_111573118_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584489_111585465_111585534_111589557_111589766_111589898_111590031_111603384_111603501_111623953_111624907_111626253
34450	chr5	+	2844	18	Antisense	novelGene_ENSMUSG00000105815.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTTGCCATGCGGTGAC	5368	False	NA	NA	False	NA	NA	NA	122688269	122752582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_122689267_122693559_122693605_122697216_122697304_122697759_122697831_122698720_122698808_122705322_122705412_122706971_122707103_122710702_122710853_122729142_122729289_122731111_122731207_122732585_122732750_122738500_122738588_122740330_122740440_122740745_122740813_122745029_122745121_122747235_122747416_122749004_122749171_122752500
34451	chr5	+	3040	3	NNC	ENSMUSG00000066894.15	novel	4236	10	NA	NA	-1293	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.5	2	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATACATTTCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	117486681	117493066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_117487235_117489620_117489857_117490815
34452	chr4	-	2138	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	-28	3	-28	-3	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	515	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACTGGGTCCAGGCTGA	NA	False	NA	NA	False	NA	NA	NA	130253764	130209178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
34453	chr19	+	3640	6	Antisense	novelGene_ENSMUSG00000041360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCCACCACCCCCCGCCG	NA	False	NA	NA	False	NA	NA	NA	27398025	27407220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_27398872_27399754_27399821_27400052_27400150_27400907_27403415_27404436_27404534_27407193
34454	chr5	-	2188	10	Genic_Genomic	ENSMUSG00000104559.2	novel	775	1	NA	NA	482	56742	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGGCCTCGCAACACGCA	NA	False	NA	NA	False	NA	NA	NA	111535673	111478638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_111478717_111486145_111486293_111494346_111494446_111495645_111495720_111497354_111497440_111519175_111519259_111528060_111528166_111530850_111530977_111533385_111533470_111534366
34455	chr10	+	2804	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	602.985506321117	1	129	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTCCCTGAGCCCTT	1589	False	NA	NA	False	NA	NA	NA	79690466	79700193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79694569_79694659_79694785_79695094_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
34456	chr13	+	3006	6	FSM	ENSMUSG00000006720.17	ENSMUST00000176511.8	2703	6	-14	-289	-14	-5	multi-exon	FALSE	canonical	3	28	junction_1	19.7949488506538	99	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAGTGAGAATCAAATTC	NA	False	NA	NA	False	NA	NA	NA	22129249	22144944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_22129370_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
34457	chr7	+	2159	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	-6	2	-6	1	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	910	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACGGTTTCTCTCTTAGG	NA	False	NA	NA	False	NA	NA	NA	24246568	24272861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
34458	chr8	+	2178	7	Intergenic	novelGene_1626	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTACCGAAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	43582844	43633351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43583726_43589312_43589417_43591580_43591834_43593678_43593774_43594002_43594506_43597339_43597563_43633232
34459	chr19	-	3968	19	NNC	ENSMUSG00000024642.18	novel	4545	20	NA	NA	569	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	46.380637988787	130	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTAGAATGATTATTTTC	NA	False	NA	NA	False	NA	NA	NA	14574846	14425518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_14427206_14429006_14429084_14429427_14429579_14429783_14429932_14430942_14431191_14432104_14432355_14441672_14441750_14442107_14442302_14442649_14442783_14443912_14444066_14444543_14444598_14445515_14445646_14495131_14495338_14522151_14522227_14541752_14541816_14571747_14571793_14572953_14573018_14574120_14574219_14574731
34460	chr2	-	2399	8	Antisense	novelGene_ENSMUSG00000026864.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCGACAGGGGCCTCGG	NA	False	NA	NA	False	NA	NA	NA	34666469	34662238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_34662456_34662567_34662805_34663193_34663318_34663830_34663946_34664037_34664430_34664545_34664774_34665069_34665244_34665557
34461	chr3	+	3852	2	NNC	ENSMUSG00000033386.11	novel	626	5	NA	NA	6620	-750	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	39	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGATGCTTATCTTAA	NA	False	NA	NA	False	NA	NA	NA	116659835	116701076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116659873_116697261
34462	chr7	-	2372	15	NNC	ENSMUSG00000052997.16	novel	2579	17	NA	NA	41	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	544.222756013809	1	91	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCATCTGCCTCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	33867959	33840124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861041_33864822_33864911_33867797
34463	chr11	+	2504	15	Antisense	novelGene_ENSMUSG00002076300.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	127	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAGAAAAACAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	75191475	75233022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75192229_75193492_75193583_75196937_75197034_75197915_75198117_75200957_75201096_75203128_75203274_75203517_75203659_75203803_75204070_75205644_75205739_75206927_75207062_75209235_75209357_75219497_75219587_75231114_75231221_75231855_75231930_75232966
34465	chr8	-	2729	11	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	1	intron_retention	FALSE	canonical	3	191	junction_8	16.6204693074534	1	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAGTTAGCGATATTG	NA	False	NA	NA	False	NA	NA	NA	106578640	106571307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
34466	chr1	-	2313	15	NNC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	53.8151124362907	119	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGGTTCTGGAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	36722252	36601778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36602102_36603410_36603564_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
34467	chr16	+	1751	10	NNC	ENSMUSG00000002845.15	novel	578	4	NA	NA	-2938	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	320.916896284673	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	4132	False	NA	NA	False	NA	NA	NA	38376121	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38376219_38377505_38377590_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
34468	chr15	+	2049	14	NIC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	-4	-10	intron_retention	FALSE	canonical	3	114	junction_10	18.314155291022	459	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTCGTCTGAAAGAAATC	3145	False	NA	NA	False	NA	NA	NA	76460600	76479998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479654_76479738
34469	chr19	-	2444	11	NNC	ENSMUSG00000024982.11	novel	2263	11	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	213.543438204034	2	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAGTTTTCACCAAAAAG	7483	False	NA	NA	False	NA	NA	NA	55304420	55286746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300272_55301620_55301713_55302732_55303205_55303948
34470	chr5	+	629	7	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	28	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2729.76503364097	4	1	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCAAGCAGCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	108048465	108055905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052589_108055853
34471	chr2	+	3415	22	NNC	ENSMUSG00000040084.10	novel	3668	23	NA	NA	68	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	139.120235441495	1	148	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTACATTTCTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	118428759	118472064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118428913_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
34472	chr13	+	2484	10	NIC	ENSMUSG00000021697.13	novel	2563	11	NA	NA	16	-15	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	35.1771530793132	224	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATACTATGCCT	2863	False	NA	NA	False	NA	NA	NA	108452881	108526104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_108453004_108460439_108460706_108493927_108494064_108498768_108498897_108500066_108500198_108510246_108510388_108519289_108519457_108521259_108521437_108523368_108523555_108525074
34473	chr12	+	1319	7	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	7	-1689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1723.092181709	16	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908865	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913620_78923987_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
34475	chr11	+	2495	3	FSM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	-292	46	-27	-46	multi-exon	FALSE	canonical	3	94	junction_1	18.5	106	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTAGATGGTCAGTATGA	NA	False	NA	NA	False	NA	NA	NA	102175729	102180017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102176545_102178133_102178698_102178901
34476	chr8	-	1866	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	-3	intron_retention	FALSE	canonical	3	157	junction_3	25.3106321369806	43	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGAAGAAAGTTAGCGAT	NA	False	NA	NA	False	NA	NA	NA	106578640	106571311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106576154_106576257_106576346_106576464_106576556_106578502
34477	chr15	-	2527	15	NIC	ENSMUSG00000023015.15	novel	2933	17	NA	NA	-9	-783	intron_retention	FALSE	canonical	3	453	junction_14	69.2698435431306	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGAGTTTGAGTGTTGCA	NA	False	NA	NA	False	NA	NA	NA	99549502	99519160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99519346_99520099_99520206_99521449_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
34478	chr7	-	3205	9	NNC	ENSMUSG00000008435.16	novel	3034	7	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	11.008519428152	30	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGTCATTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	4448214	4428665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4438186_4438286_4445592_4445749_4446735_4446771_4447199_4447321_4447976
34479	chr4	+	3043	17	FSM	ENSMUSG00000041143.17	ENSMUST00000050949.9	3318	17	276	-1	272	1	multi-exon	FALSE	canonical	3	56	junction_1	8.00780868902348	157	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAGGGTTCTTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	138700491	138786479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_138700599_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
34481	chr2	+	5228	39	FSM	ENSMUSG00000005102.14	ENSMUST00000005233.12	5212	39	-16	0	-16	0	multi-exon	FALSE	canonical	3	66	junction_24	13.8429307338417	108	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTGTTTTCCATTTGCA	NA	False	NA	NA	False	NA	NA	NA	118219082	118305715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363_118241445_118243415_118243565_118247707_118247824_118251198_118251354_118252443_118252980_118257045_118257153_118258308_118258467_118261276_118261705_118262691_118262762_118265103_118265188_118266643_118266767_118269446_118269552_118271642_118271701_118272495_118272576_118273605_118273708_118276740_118276795_118278756_118278994_118280790_118280867_118281892_118282015_118285308_118285359_118286256_118286426_118287606_118287724_118288306_118288373_118292207_118292379_118292704_118292840_118293144_118293253_118294426_118294556_118296833_118296921_118298642_118298756_118300724_118300784_118301316_118301415_118302370_118302440_118303122_118303168_118304512_118304632_118305483
34482	chr17	+	4909	21	ISM	ENSMUSG00000032624.17	ENSMUST00000112363.10	5081	22	59034	-76	-46276	-15	3prime_fragment	FALSE	canonical	3	110	junction_2	92.9458309984907	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAGATAATCAAA	NA	False	NA	NA	False	NA	NA	NA	83717453	83787769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_83717638_83729034_83729165_83734651_83734781_83735428_83735455_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
34485	chr8	-	1405	8	NNC	ENSMUSG00000031954.7	novel	1178	7	NA	NA	-79	15	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	856.027846199753	6781	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAAGGGTGCCGTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	112581002	112495107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112495420_112498511_112498645_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
34486	chr2	-	4026	10	FSM	ENSMUSG00000038705.14	ENSMUST00000049032.13	4121	10	93	2	74	-2	multi-exon	FALSE	canonical	3	53	junction_5	10.3171916936948	84	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGTGTGTTTGTCTCTTGT	6269	False	NA	NA	False	NA	NA	NA	180929735	180893243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_180896217_180896934_180897058_180897287_180897426_180897664_180897737_180900776_180900935_180902087_180902192_180906773_180906902_180907607_180907706_180919741_180919915_180929676
34487	chr1	+	3504	13	NNC	ENSMUSG00000042251.13	novel	6900	13	NA	NA	3	1738	intron_retention	FALSE	canonical	3	7	junction_3	17.7153417503963	95	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGGTATTGTGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	131725138	131745852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131725325_131726333_131726421_131728831_131729036_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
34488	chr1	-	1747	6	ISM	ENSMUSG00000041879.14	ENSMUST00000161032.8	4226	25	41642	0	-116	0	3prime_fragment	FALSE	canonical	3	585	junction_4	32.0599438552222	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTCTGCATACTCTAAG	NA	False	NA	NA	False	NA	NA	NA	135316554	135312210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248
34489	chrX	-	2241	9	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	35	8	intron_retention	FALSE	canonical	3	1120	junction_6	124.053415914275	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTTCTCACTTTAGCAC	NA	False	NA	NA	False	NA	NA	NA	72830468	72822640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
34490	chr4	-	758	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	83	67	-15	36	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	108	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCGGGTCTGTATGTTTC	NA	False	NA	NA	False	NA	NA	NA	150994300	150981656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
34491	chr6	-	2453	6	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	-12	-178	at_least_one_novel_splicesite	FALSE	canonical	2	32	junction_1	890.424303352059	1	103	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCCTTCTCCCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	148847925	148822732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824525_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
34492	chr7	-	1545	9	NNC	ENSMUSG00000052833.10	novel	1875	9	NA	NA	-13	-283	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1012.88449489564	1	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTGGGATGCCGGGGCA	NA	False	NA	NA	False	NA	NA	NA	16121744	16061257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104301_16112285_16112402_16121565
34493	chr1	-	1759	17	NNC	ENSMUSG00000026245.17	novel	2036	18	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	350.596049384117	9	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATCTGACTCCTTGCGTA	NA	False	NA	NA	False	NA	NA	NA	78465496	78401730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456721_78456749_78458944_78459001_78465421
34495	chr11	-	2774	13	NNC	ENSMUSG00000005949.10	novel	2723	12	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	26.3354429534716	1	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTACACTCGGAACGTT	4519	False	NA	NA	False	NA	NA	NA	73089814	73074428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73087924_73088079_73089470_73089582_73089743
34496	chr5	-	3703	27	FSM	ENSMUSG00000029086.16	ENSMUST00000087441.11	3664	27	-44	5	-44	-2	multi-exon	FALSE	canonical	3	24	junction_7	5.3433861125628	45	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGCTTTTGGTGTTTGG	NA	False	NA	NA	False	NA	NA	NA	44259067	44150968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
34497	chr2	+	3208	22	NNC	ENSMUSG00000052533.15	novel	5710	44	NA	NA	-16382	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	359.00023686347	2	136	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGCCTGTGTCATGTGG	NA	False	NA	NA	False	NA	NA	NA	30216569	30234270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229514_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232773_30232979_30233066_30233286_30233361_30233472_30233603_30233713
34498	chr3	-	2195	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-5	8	combination_of_known_junctions	TRUE	canonical	1	37	junction_8	152.565342046449	15	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCATCTGAGTCCGAAT	NA	False	NA	NA	False	NA	NA	NA	95662188	95647279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
34499	chr4	-	2053	4	NNC	ENSMUSG00000003032.9	novel	3029	5	NA	NA	813	-126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	566.724702910407	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAACTTCTATTTTGTATA	2369	False	NA	NA	False	NA	NA	NA	55530957	55527268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_55527795_55527897_55528301_55529717_55529883_55529998
34500	chr1	-	2851	11	NIC	ENSMUSG00000026019.16	novel	10012	13	NA	NA	4	-1256	intron_retention	FALSE	canonical	0	0	junction_8	290.788858108422	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTCTTAGTGTCTCAC	NA	False	NA	NA	False	NA	NA	NA	60137063	60117282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60126360_60127199_60127316_60130178_60130274_60133590_60133686_60136665
34501	chr13	-	2780	14	NNC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	93	-7	intron_retention	FALSE	non_canonical	0	0	junction_6	194.836572390371	5	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGACCAGTTCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	55684144	55678235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680183_55680293_55680811_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108
34502	chr8	+	2290	18	FSM	ENSMUSG00000038416.16	ENSMUST00000043962.9	2301	18	11	0	10	0	multi-exon	FALSE	canonical	3	559	junction_10	60.600055957127	362	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAAGCTGGTAGAGTG	NA	False	NA	NA	False	NA	NA	NA	13807686	13831938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
34503	chr2	-	2236	4	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-30	854	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	509.164675391633	1	78	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTATTTGAGGATCT	2307	False	NA	NA	False	NA	NA	NA	177270033	177260142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177262087_177263233_177263288_177263479_177263607_177269922
34504	chr15	-	1673	16	NNC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	13	junction_15	126.968482528364	4	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	NA	False	NA	NA	NA	102259130	102246690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102259000
34505	chr15	+	2730	11	NNC	ENSMUSG00000022351.15	novel	2758	11	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	239.12342001569	1	98	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGAACTCTTATGTTCT	NA	False	NA	NA	False	NA	NA	NA	59186932	59203028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198504_59201588_59201677_59202573
34506	chr7	-	3261	11	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	203	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	75.8654071365863	1	153	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATATGACTTTATTTTTC	2868	False	NA	NA	False	NA	NA	NA	3214128	3204501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209264_3209382_3211070_3211249_3212041_3212201_3213722
34507	chr14	+	1471	3	FSM	ENSMUSG00000022010.20	ENSMUST00000177207.2	1476	3	3	2	3	-1	multi-exon	FALSE	canonical	3	21	junction_1	1157	114	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACACGTGTTTCTATATG	6278	False	NA	NA	False	NA	NA	NA	76741656	76745201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76741734_76742688_76742738_76743856
34508	chr12	-	5011	5	NNC	ENSMUSG00000020652.18	novel	1683	5	NA	NA	-43	-737	intron_retention	FALSE	canonical	3	55	junction_4	16.6188898546203	11	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACCTGAATCTTAAATG	NA	False	NA	NA	False	NA	NA	NA	4284008	4262403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
34509	chr9	+	5432	24	FSM	ENSMUSG00000032363.16	ENSMUST00000113059.8	5379	24	-62	9	-62	-6	multi-exon	FALSE	canonical	2	12	junction_18	7.29502510649195	40	17	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTTCAGAGTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	90045059	90082144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_90045368_90053526_90053883_90055674_90055841_90056524_90056704_90059835_90059920_90060205_90060331_90061375_90061526_90062677_90062825_90067788_90067934_90068512_90068606_90068974_90069121_90070321_90070492_90070711_90070846_90071671_90071793_90072900_90073146_90073417_90073554_90073888_90074016_90074433_90074648_90074951_90076323_90077210_90077364_90077729_90077904_90077983_90078131_90079052_90079216_90081766
34510	chr14	+	1967	7	FSM	ENSMUSG00000053453.10	ENSMUST00000223832.2	1918	7	-49	0	-32	0	multi-exon	FALSE	canonical	3	370	junction_1	120.431169830184	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	NA	False	NA	NA	NA	8508453	8520749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_8508579_8515106_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
34511	chrX	-	1438	6	NIC	ENSMUSG00000031167.17	novel	1338	7	NA	NA	24	-1	intron_retention	FALSE	canonical	3	855	junction_1	167.275341876799	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATACTGATAATGCTTTTT	6603	False	NA	NA	False	NA	NA	NA	8011894	8008600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009195_8009489_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
34512	chr7	-	2047	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	100	24	-2	-24	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	3	99	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGTTGGAACCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	117728785	117718137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
34513	chr5	-	4150	16	FSM	ENSMUSG00000055923.17	ENSMUST00000120963.8	3694	16	21	-477	-1	477	multi-exon	FALSE	canonical	3	29	junction_15	18.6828501275605	99	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCCCATCTTGCTTTTG	NA	False	NA	NA	False	NA	NA	NA	77053340	77023304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
34514	chr11	+	2489	7	NIC	ENSMUSG00000020873.16	novel	1523	9	NA	NA	98	-112	intron_retention	FALSE	canonical	3	260	junction_3	12.684198393627	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATCAAAGGAAGCAAGA	NA	False	NA	NA	False	NA	NA	NA	95275829	95282490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_95275940_95276626_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350
34515	chr9	-	4485	16	NNC	ENSMUSG00000032085.6	novel	1595	5	NA	NA	4686	22404	intron_retention	TRUE	non_canonical	0	0	junction_1	0	3	97	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACCGATGCTGTCCGGAA	NA	False	NA	NA	False	NA	NA	NA	45842186	45818512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_45818600_45819823_45819947_45820554_45821032_45821670_45821808_45822381_45822545_45824244_45824338_45825625_45825681_45826383_45826523_45827283_45827397_45830067_45830225_45831086_45831192_45837215_45837366_45838031_45838124_45838869_45838964_45839180_45839301_45839806
34516	chr16	+	2394	7	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	55.8141758178173	276	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	NA	False	NA	NA	NA	3702502	3722634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718744_3719648_3719990_3721329
34517	chr14	-	1913	9	NIC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	0	2	intron_retention	FALSE	canonical	3	11	junction_6	54.3103063423509	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGAAGTGAAATTATGG	NA	False	NA	NA	False	NA	NA	NA	52542581	52532311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52532551_52533530_52533644_52533972_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52537157_52537563_52537640_52537859_52542344
34519	chr15	-	1899	10	NIC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	3	0	intron_retention	FALSE	canonical	3	1143	junction_6	145.713569870635	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	75952758	75942038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
34521	chr5	-	2744	17	FSM	ENSMUSG00000010721.16	ENSMUST00000055195.11	4926	17	9	2173	9	144	multi-exon	FALSE	canonical	3	26	junction_2	11.2080816266656	64	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTTGAATTTAGTTTC	NA	False	NA	NA	False	NA	NA	NA	29583373	29436972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29583124
34522	chr4	-	2662	19	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	28	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	246.49773995408	1	110	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGGTGTGCTTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	120427445	120397066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410212_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424655_120427392
34524	chr3	-	1173	9	ISM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	5858	7	-1427	0	3prime_fragment	FALSE	canonical	3	876	junction_3	393.330014110289	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTTTGCTTCAAATAGT	NA	False	NA	NA	False	NA	NA	NA	94944005	94940014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915
34525	chr11	+	2900	10	NNC	ENSMUSG00000059248.14	novel	647	4	NA	NA	-1641	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	268.139267297177	1	108	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTTTTTTTCTGGAGTT	NA	False	NA	NA	False	NA	NA	NA	117197338	117253135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117197462_117242254_117242447_117242974_117243104_117243432_117243501_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
34526	chr7	-	1791	10	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	14	-2	intron_retention	FALSE	canonical	3	1495	junction_4	210.153265646119	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAACTGTCTTGATGTGT	NA	False	NA	NA	False	NA	NA	NA	79765066	79744599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79744952_79745368_79745462_79745546_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
34527	chr17	-	972	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	96	690	96	6	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTATCTGGATATATT	NA	False	NA	NA	False	NA	NA	NA	15718464	15695972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
34528	chr4	+	3607	9	NIC	ENSMUSG00000040410.15	novel	2478	9	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	28.3259487925824	26	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTCTTTGTTAAGAATC	-1	True	NA	NA	False	NA	NA	NA	22357580	22434088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390713_22390922_22403531_22403746_22422716_22423928_22427149_22427463_22433566
34529	chr3	-	3508	11	NIC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	17	2658	intron_retention	FALSE	canonical	3	411	junction_4	18.2321145235543	4	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCCCAGAAGAAATTTAAG	NA	False	NA	NA	False	NA	NA	NA	95763180	95741142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
34530	chr2	-	3462	10	NNC	ENSMUSG00000026779.7	novel	1201	7	NA	NA	-47	-9383	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	56.8506816142076	6	36	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAAAAGCTTGTCTTAA	NA	False	NA	NA	False	NA	NA	NA	23045956	23015000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_23016302_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045836
34531	chr6	+	4046	12	NIC	ENSMUSG00000030207.16	novel	4221	13	NA	NA	-57	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	23.6583813534329	6	94	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTGTGTCCTTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	135175049	135213239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_135175100_135186030_135186430_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
34533	chr2	-	2002	5	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	25135	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.198679169708	1	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	NA	False	NA	NA	NA	75509698	75505856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75506545_75506658_75507529_75507888_75508057_75508831_75508922_75509512
34534	chrX	+	2251	10	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	318.344599374039	1	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAAGCCTGGCTCTTTA	6223	False	NA	NA	False	NA	NA	NA	73348878	73355461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350182_73350293_73350450_73350551_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
34535	chr17	-	1555	2	Antisense	novelGene_ENSMUSG00000061062.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGCCCGCCCCATTAGAT	NA	False	NA	NA	False	NA	NA	NA	78800981	78798979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_78800413_78800859
34536	chr6	-	2753	16	NIC	ENSMUSG00000058486.12	novel	2682	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_14	24.5335144920848	172	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCTCTTTCTGGAC	5819	False	NA	NA	False	NA	NA	NA	34887768	34857360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34886648_34886763_34887631
34537	chr8	-	1818	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	22	-32	-1	32	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	1481	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGGGAGAAAACAGAACAAA	3355	False	NA	NA	False	NA	NA	NA	105261247	105237627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
34538	chr5	-	1993	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	195	1679	-47	172	multi-exon	FALSE	canonical	3	476	junction_10	93.9036148872283	1758	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	121731692	121705768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
34539	chr11	+	1781	8	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	7	junction_7	184.02828087896	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTTAAGATCATCTTTAC	9190	False	NA	NA	False	NA	NA	NA	70538112	70542245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541716
34540	chr3	-	3530	10	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	-521	-170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	547.863527207684	1	148	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTTGTTCTAAAATTGT	8652	False	NA	NA	False	NA	NA	NA	104772342	104730264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104732437_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752243_104752298_104771655
34541	chr1	+	4063	5	Antisense	novelGene_ENSMUSG00000026193.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	83	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTTCATGGCAGCGAT	NA	False	NA	NA	False	NA	NA	NA	71679508	71688464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_71680488_71681110_71681291_71682118_71682310_71684704_71687306_71688352
34542	chr14	-	1914	18	NIC	ENSMUSG00000022040.9	novel	2035	19	NA	NA	2	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	51.6540930490481	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTTGTGTTCTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	66361947	66321821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66345425_66345617_66347564_66347725_66354159_66354245_66361783
34543	chr18	-	2968	3	ISM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	4847	2593	-2254	-6	3prime_fragment	FALSE	canonical	3	248	junction_1	12.5	7	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATAATATTTTTTACAGTT	NA	False	NA	NA	False	NA	NA	NA	61854547	61848087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_61849199_61851824_61851907_61852772
34544	chr19	+	325	1	ISM	ENSMUSG00000025192.14	ENSMUST00000081079.6	5911	13	42622	1079	5927	-1079	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCTCAGGATACCTAT	9294	False	NA	NA	False	NA	NA	NA	43720732	43721057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_43720700_43721100
34545	chr15	+	1388	9	Antisense	novelGene_ENSMUSG00000022234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATCCATCATGCTTAGAA	NA	False	NA	NA	False	NA	NA	NA	31591028	31597638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_31591202_31592430_31592612_31592791_31592930_31593012_31593201_31593662_31593783_31594244_31594393_31594479_31594672_31595789_31596008_31597608
34546	chr1	+	1939	9	ISM	ENSMUSG00000037860.16	ENSMUST00000147604.8	2839	12	69733	594	14	-586	3prime_fragment	FALSE	canonical	3	62	junction_1	21.7884000100971	69	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTAACCAGTACCCCCC	NA	False	NA	NA	False	NA	NA	NA	173248177	173293012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
34547	chr11	+	2274	7	FSM	ENSMUSG00000020680.16	ENSMUST00000134185.8	881	7	22	-1415	-3	1415	multi-exon	FALSE	canonical	3	28	junction_5	8.74960316560446	64	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATAAGTACACTTTAGCT	8676	False	NA	NA	False	NA	NA	NA	83363933	83381454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750
34548	chr10	+	2942	10	NIC	ENSMUSG00000032763.12	novel	3020	12	NA	NA	33	-2	intron_retention	FALSE	canonical	3	132	junction_7	18.3350167577282	12	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCCCAAGGACTCAGTCA	5955	False	NA	NA	False	NA	NA	NA	78410889	78420311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053
34549	chr4	+	3509	24	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	21	3	intron_retention	FALSE	non_canonical	0	0	junction_15	44.2585631926638	2	109	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAACTATCAGTTTT	3554	False	NA	NA	False	NA	NA	NA	108477157	108491305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485756_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367
34550	chr19	+	2307	8	NIC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	-12	-2	intron_retention	FALSE	canonical	3	169	junction_1	31.2932150173556	294	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATTCTTTGGGTCTGTGC	4241	False	NA	NA	False	NA	NA	NA	46345361	46363689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360815_46362884
34551	chr16	+	3588	5	FSM	ENSMUSG00000097290.10	ENSMUST00000180830.3	3557	5	-38	7	-2	-2	multi-exon	FALSE	canonical	3	16	junction_4	55.9838146253004	65	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCTTTTAGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	21613103	21624873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21621702
34552	chr6	+	4146	30	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_23	93.2985822287656	1	221	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCACAGAGGTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	116185043	116239622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225131_116231067_116231180_116231373_116231455_116232009_116232130_116233598_116233790_116235602_116236218_116237451_116237630_116239295
34554	chr3	-	1579	4	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	109	-7	intron_retention	FALSE	canonical	3	6820	junction_1	1696.12702616546	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTTTGCTTCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	86049900	86045253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86045418_86045789_86046556_86048545_86049109_86049814
34555	chr3	+	1759	6	NNC	ENSMUSG00000015749.13	novel	3274	7	NA	NA	11	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	660.715672585417	71	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGACTAGCTTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	95836605	95854696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845288_95853833
34556	chr8	+	4189	23	Antisense	novelGene_ENSMUSG00000031835.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	193	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCGCAAGTCTCGCGAGA	6398	False	NA	NA	False	NA	NA	NA	120234893	120285473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_120235718_120236998_120237125_120240614_120240738_120242315_120242449_120244877_120245018_120247009_120247089_120247736_120247861_120248492_120248650_120249216_120249321_120251154_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260224_120262017_120262117_120264865_120264932_120265580_120265703_120268326_120268433_120268812_120268923_120269461_120269663_120272723_120272981_120274138_120274616_120285376
34557	chr2	+	4200	8	ISM	ENSMUSG00000027475.10	ENSMUST00000028977.7	5635	9	26147	0	26147	0	3prime_fragment	FALSE	canonical	3	31	junction_1	4.89064079103534	32	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTCCTTGTCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	153159479	153175310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_153159605_153162194_153162297_153162498_153162622_153162703_153162823_153164731_153164846_153165456_153165563_153171491_153171671_153171978
34558	chr5	-	1755	13	NIC	ENSMUSG00000029145.13	novel	1878	13	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_3	236.446420404755	2	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCCCATGACTCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	31350466	31344912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31345145_31345257_31345439_31346912_31347091_31347320_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
34559	chr7	+	3267	15	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	379.486575815917	6	169	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAAACCCTTTGTGTTGT	7246	False	NA	NA	False	NA	NA	NA	109617528	109655809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626356_109628897_109629052_109630814_109630974_109636150_109636302_109638370_109638465_109639812_109639908_109640031_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109650680_109650735_109651917_109652125_109653206_109653324_109654223
34560	chrX	-	2399	18	ISM	ENSMUSG00000025059.17	ENSMUST00000156390.8	4245	20	25	8388	12	2070	5prime_fragment	FALSE	canonical	3	125	junction_17	13.834163619279	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCAATTTTTTATTAGG	NA	False	NA	NA	False	NA	NA	NA	84820218	84753930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
34561	chr1	+	1926	8	ISM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	216	9	2	-5	intron_retention	FALSE	canonical	3	291	junction_1	56.9597064885811	1518	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGGAATCATTGTCGTC	8187	False	NA	NA	False	NA	NA	NA	134333734	134339469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230
34563	chr2	+	1029	6	FSM	ENSMUSG00000026856.15	ENSMUST00000156059.8	767	6	-18	-244	-6	244	multi-exon	FALSE	canonical	3	306	junction_4	25.419677417308	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTACGGGGACAGCAGTC	NA	False	NA	NA	False	NA	NA	NA	30282421	30287571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030
34564	chr3	-	1179	1	ISM	ENSMUSG00000037174.19	ENSMUST00000194641.6	5919	10	86759	6	6337	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGACACCATTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	51161325	51160146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_51160100_51161300
34565	chr17	+	2817	1	NIC	ENSMUSG00000053347.16	novel	2741	4	NA	NA	28964	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGTTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22210530	22213347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_22210500_22213300
34566	chr17	+	3465	18	NNC	ENSMUSG00000024462.18	novel	4036	18	NA	NA	408	-12	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	28.1268751777803	106	24	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTAACAGTGTGACTCAG	NA	False	NA	NA	False	NA	NA	NA	37361973	37385170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37362052_37362498_37362556_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
34567	chr17	+	2349	16	NIC	ENSMUSG00000002833.12	novel	3354	12	NA	NA	49	1	combination_of_known_junctions	FALSE	canonical	3	60	junction_1	249.767002535474	14	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAGAAACAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	56388472	56407593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56388717_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
34568	chr14	-	3807	18	NNC	ENSMUSG00000022095.10	novel	4033	17	NA	NA	49	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.8496142792766	49	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCTGACTCTCCCCAGT	NA	False	NA	NA	False	NA	NA	NA	70837226	70820735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70821040_70821216_70822624_70822778_70822880_70823058_70823200_70823514_70823659_70823796_70823888_70824009_70824139_70824245_70824392_70824990_70825181_70825401_70825479_70825701_70825811_70826042_70826240_70826315_70826562_70827568_70827692_70827779_70827885_70829014_70829188_70831408_70831488_70837181
34569	chrX	-	2243	6	NIC	ENSMUSG00000045010.15	novel	1190	7	NA	NA	-8	-6	intron_retention	FALSE	canonical	3	117	junction_2	83.8035798758024	144	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACAGCTGTACTTTTGC	NA	False	NA	NA	False	NA	NA	NA	100838037	100833959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100834130_100834212_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
34571	chr19	-	1281	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	128	-16	128	16	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGATTGTGACTTTCATC	NA	False	NA	NA	False	NA	NA	NA	8690221	8684934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
34573	chr18	+	1512	5	FSM	ENSMUSG00000037058.17	ENSMUST00000235400.2	1522	5	13	-3	13	0	multi-exon	FALSE	canonical	3	31	junction_1	1449.29120607282	56	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4685	False	NA	NA	False	NA	NA	NA	35731714	35750239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35731813_35741790_35741873_35743923_35744088_35746375_35746556_35749251
34574	chr15	+	2066	14	NIC	ENSMUSG00000022550.19	novel	2026	15	NA	NA	-4	3	intron_retention	FALSE	canonical	2	13	junction_4	37.6473829606652	481	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATCGTTTTCTTTGTGTT	3145	False	NA	NA	False	NA	NA	NA	76460600	76480012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477635_76477832_76477918_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
34576	chr1	+	1267	10	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	870.825534255347	2	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724145	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724390_59729644_59729661_59743228_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749741_59750507
34577	chr10	+	2223	1	NIC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	116	-223	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	16	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTTCTGTGGAAACTCT	NA	False	NA	NA	False	NA	NA	NA	126899600	126901823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126899600_126901800
34578	chr8	-	1717	10	NIC	ENSMUSG00000031708.18	novel	1120	12	NA	NA	16	-3	intron_retention	FALSE	canonical	3	3555	junction_3	300.504924879016	55	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACCCAACTGACTGTGT	NA	False	NA	NA	False	NA	NA	NA	84321078	84298336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84300552_84301106_84301158_84320968
34579	chr4	+	2773	3	NIC	ENSMUSG00000006392.17	novel	1145	7	NA	NA	-528	0	intron_retention	FALSE	canonical	3	653	junction_2	17.5	5	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	118268105	118272308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118269000_118269548_118269943_118270823
34580	chr6	+	1738	13	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-1	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2283.9177171888	1	61	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5147	False	NA	NA	False	NA	NA	NA	85429032	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444759_85445034_85445198_85445262
34581	chr11	+	939	6	NNC	ENSMUSG00000018286.7	novel	798	6	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2339.24488671024	13	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTGTGTGAAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	70416211	70418479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417632_70417999_70418150_70418262
34582	chr1	+	2443	10	ISM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	5	4449	5	-70	5prime_fragment	FALSE	canonical	3	308	junction_4	45.5707291803049	26	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACCCAAGGCGTTCACAT	NA	False	NA	NA	False	NA	NA	NA	63769777	63789365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844
34583	chr15	-	1625	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	18	-97	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1845.17382379005	1	53	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGTGTCTGTTGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	31601868	31591042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593732_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
34584	chr9	-	984	4	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2012	7	4	-7	3prime_fragment	FALSE	canonical	3	11573	junction_3	1892.21686565432	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTGTTGGTCAATGC	9112	False	NA	NA	False	NA	NA	NA	78386994	78385737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905
34585	chr3	-	2500	11	NNC	ENSMUSG00000005813.13	novel	2686	11	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	115.687683009039	19	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	138195162	138164716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_138166262_138168125_138168192_138171984_138172057_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
34586	chr11	-	2111	9	FSM	ENSMUSG00000020832.15	ENSMUST00000139731.8	2131	9	11	9	11	-9	multi-exon	FALSE	canonical	3	178	junction_7	16.6466025062173	197	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTTATTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	77971198	77964210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_77965001_77965105_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
34587	chr5	-	1916	13	FSM	ENSMUSG00000001082.13	ENSMUST00000001109.11	1907	13	-14	5	9	0	multi-exon	FALSE	canonical	3	174	junction_12	65.1670929227321	1240	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794547	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
34588	chr2	-	2510	11	NNC	ENSMUSG00000039536.17	novel	3569	12	NA	NA	19	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	98.972723515118	2	29	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTTTCCAATTGAGCAG	NA	False	NA	NA	False	NA	NA	NA	166838166	166790060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166791280_166791663_166791750_166792150_166792274_166792922_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166801942_166802042_166805348_166805515_166806498_166806638_166837953
34589	chr14	+	1509	3	NIC	ENSMUSG00000035960.15	novel	935	4	NA	NA	93	-2	intron_retention	FALSE	canonical	3	1054	junction_1	83	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGGCTTTCTTTGTCC	282	False	NA	NA	False	NA	NA	NA	51162527	51164594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_51163162_51163617_51163811_51163912
34590	chr11	+	2899	2	Genic_Genomic	ENSMUSG00000025135.13	novel	3229	3	NA	NA	-1999	-102	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCGTGCTGGAGGCCTCT	804	False	NA	NA	False	NA	NA	NA	120492770	120496500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120494414_120495244
34591	chr17	-	1456	3	NIC	ENSMUSG00000047407.18	novel	1714	3	NA	NA	294	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_2	436	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	NA	False	NA	NA	NA	71156345	71151205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_71152268_71153166_71153394_71156178
34592	chr11	+	2764	3	Antisense	novelGene_ENSMUSG00000018362.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAAGAGCCCAAACAGCT	NA	False	NA	NA	False	NA	NA	NA	106879465	106882692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106881197_106881463_106881699_106881894
34593	chr10	-	1298	6	NIC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-12	0	intron_retention	FALSE	canonical	3	2552	junction_1	168.145175369381	363	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTGGTGCAATCCTAGA	5588	False	NA	NA	False	NA	NA	NA	79875556	79871784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
34594	chr3	-	1806	9	NIC	ENSMUSG00000005625.16	novel	1276	10	NA	NA	-11	-12	intron_retention	FALSE	canonical	3	876	junction_3	392.570296252786	174	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCAAGTTTTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	94949874	94940027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
34595	chr4	+	1427	3	Fusion	ENSMUSG00000082352.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	22241	767	multi-exon	FALSE	non_canonical	0	0	junction_2	15	2	28	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	145159076	145302498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145301002_145301549_145301692
34596	chr8	+	2619	6	NNC	ENSMUSG00000031885.15	novel	395	2	NA	NA	-231	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	74.3220021258846	235	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	3515	False	NA	NA	False	NA	NA	NA	105897074	105944621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_105897160_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
34597	chr8	-	3096	7	FSM	ENSMUSG00000014837.16	ENSMUST00000014981.8	3492	7	374	22	14	-21	multi-exon	FALSE	canonical	3	11	junction_6	11.0302614051829	1781	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAAACAGCAGTTACAAT	NA	False	NA	NA	False	NA	NA	NA	106016122	106007062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106016035
34598	chr14	+	2662	12	NIC	ENSMUSG00000015971.6	novel	2119	13	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	289	junction_4	27.7366601098544	8	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGACACTGATTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	29700370	29715173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29713713_29714917
34599	chr16	-	2186	13	NIC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	10	2	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	147.265915947988	421	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATATTCTTATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30406371	30380186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_30380681_30383463_30383638_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
34601	chr5	-	3285	21	NNC	ENSMUSG00000015882.19	novel	10477	8	NA	NA	27451	27253	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	132	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGAGTGACGGGTTAGCGC	23	False	NA	NA	False	NA	NA	NA	45857469	45827269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_45827475_45828360_45828569_45829620_45829843_45831698_45831844_45832108_45832196_45833289_45833484_45833936_45834093_45835692_45835830_45837194_45837315_45838704_45838796_45839066_45839247_45844651_45844763_45845901_45846043_45848966_45849158_45850487_45850679_45851091_45851267_45852993_45853152_45853368_45853511_45853813_45853897_45856187_45856246_45857179
34602	chr14	-	1473	8	ISM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	8797	0	-36	0	3prime_fragment	FALSE	canonical	3	2964	junction_2	198.16711150348	3	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63737744	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569
34603	chr5	+	2454	10	NNC	ENSMUSG00000029131.15	novel	2918	10	NA	NA	3	-110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	731.414526705987	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGAGTCCAGCTCTCTT	4604	False	NA	NA	False	NA	NA	NA	29940995	29991366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953403_29955948_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
34604	chr4	+	2096	9	FSM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	0	-691	0	-2	multi-exon	FALSE	canonical	3	309	junction_6	50.2767341819255	776	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAACATCTGTTTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	83335960	83372268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
34605	chr14	-	2221	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	48	644	-38	-644	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	8	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTCCATCAGTAGACTC	6392	False	NA	NA	False	NA	NA	NA	66071395	66057130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
34606	chr2	-	2155	11	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	84	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	219.514373105726	1	33	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAACTCCCCTTTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	165740852	165669110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694054_165717624_165717696_165740835
34607	chr1	-	1522	12	ISM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	253	3669	15	2548	internal_fragment	FALSE	canonical	3	863	junction_11	58.2425819062603	19	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGGACAGACACAGGGGT	NA	False	NA	NA	False	NA	NA	NA	60137052	60119695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
34608	chr9	+	1388	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	-1	151	-1	-151	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	3	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACCCTTGTGTGACTCTT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
34609	chr9	+	1348	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	6276.93498054584	23	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGGTGACAAACCCTTGT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084750_64085115_64085300_64085504
34610	chr5	-	4344	24	NIC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	4	-8	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	8.47948709081224	41	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGAAGCCTCTGCCTTT	4517	False	NA	NA	False	NA	NA	NA	140688027	140649267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_140651249_140651762_140651964_140654776_140654876_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
34611	chr2	+	2211	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111468.10	1066	12	105	-1250	-4	-2	multi-exon	FALSE	canonical	3	420	junction_1	628.312668913619	8	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCATGCTTAGCCTGCT	224	False	NA	NA	False	NA	NA	NA	90677626	90696982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90677730_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
34612	chr4	+	3334	3	NIC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-53	17	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	31	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATACTTACTAACTTGT	1	True	NA	NA	False	NA	NA	NA	12089385	12096260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_12089524_12092522_12092573_12093114
34613	chr12	-	1897	4	FSM	ENSMUSG00000059436.14	ENSMUST00000218640.2	752	4	-225	-920	-49	-2	multi-exon	FALSE	canonical	1	1	junction_2	20.0499376557634	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGTAGTAGTGTCTTCTTA	NA	False	NA	NA	False	NA	NA	NA	77009024	76984044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_76985530_76986740_76986865_77008036_77008064_77008763
34614	chr11	-	3703	19	FSM	ENSMUSG00000002814.16	ENSMUST00000002891.11	3741	19	38	0	-28	0	multi-exon	FALSE	canonical	3	121	junction_8	18.9965071513323	165	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGGTGGCATTCAGTC	NA	False	NA	NA	False	NA	NA	NA	60668153	60630883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
34615	chr15	-	1798	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-59	-2	combination_of_known_splicesites	FALSE	canonical	3	43	junction_9	124.308258816044	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACACTGTCTTCTTGTA	8607	False	NA	NA	False	NA	NA	NA	76501107	76496584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76500772
34616	chr14	-	2777	5	NNC	ENSMUSG00000021811.8	novel	1631	5	NA	NA	-26	992	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	402.227780616904	1106	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACGAAAAGGCTTGGCTA	NA	False	NA	NA	False	NA	NA	NA	20438915	20433713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20435764_20435867_20435955_20438024_20438280_20438367_20438509_20438671
34617	chr16	-	2665	8	FSM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	129	9	0	-3	multi-exon	FALSE	canonical	3	51	junction_7	24.7526539496479	91	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTCTTTTACTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	22676290	22631972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
34618	chr8	-	1408	6	NNC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	39	-163	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1019.79809766443	47	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATTGTGATTTTTATT	NA	False	NA	NA	False	NA	NA	NA	117720237	117708711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117718306_117718474_117720026
34619	chr10	-	1807	9	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-4	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1043.91810023584	1	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAAAAATAAAGACATTTT	NA	False	NA	NA	False	NA	NA	NA	93725641	93696816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698356_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707521_93715930_93716082_93725399
34620	chr13	-	2549	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	20	387	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	104.251618692469	304	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6828	False	NA	NA	False	NA	NA	NA	62860547	62846832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848493_62848576_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
34621	chr17	-	1724	7	NNC	ENSMUSG00000024327.17	novel	2433	6	NA	NA	4	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	231.179163324802	394	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCCACATGCAGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	34250652	34247252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249648_34250380
34622	chr9	+	1568	14	NIC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	32	-1	intron_retention	FALSE	canonical	3	1203	junction_10	75.7776254623359	11	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGTTCTCCCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	106354560	106362614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
34623	chr15	+	1316	12	Antisense	novelGene_ENSMUSG00000022336.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCTTGTTCGCTAAAACT	NA	False	NA	NA	False	NA	NA	NA	43114874	43146104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_43115010_43115599_43115704_43124455_43124564_43125992_43126096_43126603_43126729_43128893_43129022_43129529_43129654_43134272_43134380_43135671_43135714_43138631_43138751_43141703_43141819_43145998
34625	chr2	+	2408	11	NIC	ENSMUSG00000017721.16	novel	2562	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	49.9243427598201	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5138	False	NA	NA	False	NA	NA	NA	164339465	164350221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164339678_164339785_164339964_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194
34626	chr14	-	1778	14	NIC	ENSMUSG00000021814.18	novel	2904	14	NA	NA	0	361	combination_of_known_junctions	FALSE	canonical	1	1	junction_13	334.535074358925	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8200	False	NA	NA	False	NA	NA	NA	20529979	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529351_20529409_20529962
34627	chr2	+	1757	4	NIC	ENSMUSG00000062647.17	novel	920	7	NA	NA	-4	-9	intron_retention	FALSE	canonical	3	4686	junction_3	341.70194939775	4	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTTGACTGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	26800824	26803321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801584_26802030_26802814_26802999_26803070_26803176
34628	chr11	+	1628	5	NIC	ENSMUSG00000017404.13	novel	751	6	NA	NA	1	-15	intron_retention	FALSE	canonical	3	9068	junction_1	3020.59310194207	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97917783	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97917817_97918648_97918756_97919171_97920342_97920600_97920712_97921096
34629	chr4	+	2088	13	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-20	127	intron_retention	FALSE	canonical	2	10	junction_3	264.122906470117	2	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTATGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	155954051	155973317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155954178_155956583_155956682_155957306_155957381_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972567_155972640_155972983_155973076
34630	chrX	+	1148	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	27	3	27	-3	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	418	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGTTGTTTCACGTTAA	NA	False	NA	NA	False	NA	NA	NA	138234458	138238915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
34631	chr7	-	3621	12	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_10	48.403264694211	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTTGGCTTGTTCTAT	NA	False	NA	NA	False	NA	NA	NA	121732137	121706487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728896_121728957_121731942
34632	chr11	-	1616	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	56	128	-52	-128	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCGTGGAACCTCTTA	1903	False	NA	NA	False	NA	NA	NA	59119040	59102367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
34633	chr11	+	1215	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-14	multi-exon	FALSE	non_canonical	0	0	junction_1	0	340	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653915_120654311
34634	chrX	+	2222	11	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	521.081529129559	12	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTTTGAATTTGCTTTT	NA	False	NA	-58	True	NA	NA	NA	74139666	74153379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148910_74153087
34635	chr9	+	1912	15	ISM	ENSMUSG00000032058.15	ENSMUST00000176798.8	2074	16	16	9206	1	2160	5prime_fragment	FALSE	canonical	1	1	junction_14	155.587104024644	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTAAGTGCCCTTGGAA	30	False	NA	NA	False	NA	NA	NA	50768279	50794891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50794773
34636	chr19	+	2073	13	NIC	ENSMUSG00000025217.16	novel	2064	14	NA	NA	2	4	combination_of_known_splicesites	FALSE	canonical	2	31	junction_1	165.14917499037	3	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTTGCTTTGCCGTTA	NA	False	NA	NA	False	NA	NA	NA	45352192	45517736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_45352326_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
34637	chr6	-	1975	16	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-2	-684	combination_of_known_junctions	FALSE	canonical	3	37	junction_12	205.886959276201	1	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGCCATGAACTGGGTC	7903	False	NA	NA	False	NA	NA	NA	124806400	124794892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801611_124801814_124801949_124802074_124802142_124803261_124803388_124806247
34638	chr8	-	1910	6	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_5	2022.96228338543	3	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATGAGTTCAATTTCT	NA	False	NA	NA	False	NA	NA	NA	43759983	43748105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749173_43749261_43749574_43753664_43753743_43757512_43757597_43758716_43758980_43759877
34639	chr17	+	2479	2	FSM	ENSMUSG00000050088.10	ENSMUST00000052691.9	2506	2	28	-1	-18	1	multi-exon	FALSE	canonical	3	37	junction_1	0	279	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGTGCTGTTACTTTAG	NA	False	NA	NA	False	NA	NA	NA	15163473	15166199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_15163582_15163828
34640	chr11	+	3330	18	FSM	ENSMUSG00000020893.18	ENSMUST00000101004.9	3507	18	10	167	10	-5	multi-exon	FALSE	canonical	3	14	junction_5	5.21177798431451	80	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCCTGTGATTCTTCC	NA	False	NA	NA	False	NA	NA	NA	68986052	68997117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68986130_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215
34641	chr2	-	2652	12	FSM	ENSMUSG00000026816.15	ENSMUST00000028157.9	2739	12	79	8	-11	-8	multi-exon	TRUE	canonical	3	147	junction_7	20.5992858738452	293	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCAGCACTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	28473212	28456330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28457190_28457619_28457797_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529_28469750_28472836
34643	chr5	+	1844	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	-12	-3	-12	3	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	97	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	NA	False	NA	NA	False	NA	NA	NA	143389580	143407659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
34644	chr5	+	1394	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	77	1634	-9	-8	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	13	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	8109	False	NA	NA	False	NA	NA	NA	145051101	145064875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
34645	chr2	-	3668	11	NNC	ENSMUSG00000027217.14	novel	3751	10	NA	NA	-2	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	17.7932571498307	55	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCATTGGTTGTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	93164834	93032097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_93033472_93033563_93034768_93036044_93036129_93040138_93040322_93041168_93041268_93042162_93042238_93050363_93050559_93053056_93053130_93054841_93054924_93142291_93142373_93164616
34646	chr11	+	3415	10	ISM	ENSMUSG00000059248.14	ENSMUST00000019038.15	3784	11	24171	0	-17737	0	3prime_fragment	FALSE	canonical	3	104	junction_1	170.013797551918	1	153	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117181242	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
34647	chr17	-	910	4	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCCACGATTCCGACTTC	3054	False	NA	NA	False	NA	NA	NA	29261076	29257533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29257597_29259746_29259786_29260178_29260265_29260354
34649	chr1	-	2701	17	NNC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	101.954953288205	2	83	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCTTTATTGAGTATTTA	NA	False	NA	NA	False	NA	NA	NA	160898227	160869083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892858_160896649_160896750_160897562
34650	chr9	-	2959	18	NNC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	1	-5	intron_retention	FALSE	non_canonical	0	0	junction_11	67.7988067792645	3	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGCCTGGTCTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	107971674	107962617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969206_107969277_107969379_107969474_107969613_107969752_107969917_107969989_107970082_107970179_107970274_107971425_107971559_107971633
34652	chr5	-	2895	23	NIC	ENSMUSG00000029705.18	novel	2821	23	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_13	22.7204080541869	121	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	NA	False	NA	NA	NA	136596104	136276988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355865_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
34653	chr5	-	1907	13	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	14	455	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	855.196675722413	2	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTCAGAGTTTAACCG	NA	False	NA	NA	False	NA	NA	NA	117527073	117517226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518083_117518204_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522334_117522424_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
34654	chr19	-	1468	7	NNC	ENSMUSG00000024997.8	novel	1478	7	NA	NA	76	-20	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	278.777539745702	21	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGCGTTTTTGACTTA	1523	False	NA	NA	False	NA	NA	NA	60862918	60852508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862783
34655	chr5	-	3579	5	NNC	ENSMUSG00000048578.12	novel	5955	5	NA	NA	-2583	-2116	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	505.845084981558	5	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGGAAAGTCTGCAGTCC	2141	False	NA	NA	False	NA	NA	NA	115298821	115283155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115298704
34656	chr19	-	2098	1	Intergenic	novelGene_1191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGCGCGCGCACACACACA	NA	False	NA	NA	False	NA	NA	NA	4880371	4878273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_4878300_4880400
34658	chr1	+	1617	4	NIC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	1	-13	intron_retention	FALSE	canonical	3	2982	junction_1	98.1461495254229	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGAAAGATAACCCTTGG	NA	False	NA	NA	False	NA	NA	NA	63216290	63218802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_63216451_63216912_63218058_63218406_63218533_63218616
34659	chr12	+	2271	4	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	25	-518	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	310.65557920129	1	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGAAGGAGGTGCTGGCT	NA	False	NA	NA	False	NA	NA	NA	86516915	86567881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535357_86565594_86565881_86566346
34660	chr11	+	2019	14	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	4224	-786	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	305.615297488806	1	90	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGGATTCTGTGTTCAG	NA	False	NA	NA	False	NA	NA	NA	3918272	3929218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926297_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
34661	chr6	-	2135	6	NIC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	2749	-6	intron_retention	FALSE	canonical	3	959	junction_2	80.1663270956079	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTACTGTCATCCCACAC	4942	False	NA	NA	False	NA	NA	NA	113714939	113705028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113705425_113706556_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914
34662	chr7	+	1995	8	NIC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	-80	-7	intron_retention	FALSE	canonical	3	417	junction_1	68.1603751067574	1112	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCCAAATTCTTTGTTG	2978	False	NA	NA	False	NA	NA	NA	44711772	44727627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725853_44725975_44726164_44726244_44726354_44726735
34663	chrX	-	4900	18	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	91	-14	intron_retention	FALSE	canonical	0	0	junction_16	23.1833372927127	7	113	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAAAAAGGAACATTTG	NA	False	NA	NA	False	NA	NA	NA	134985900	134972861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974797_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134982051_134982152_134982182_134985845
34665	chr9	+	4847	11	FSM	ENSMUSG00000031993.8	ENSMUST00000164099.3	5762	11	-69	984	-69	-984	multi-exon	TRUE	canonical	3	26	junction_9	7.52927619363243	57	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGTGAAATTGTTTTAGT	NA	False	NA	NA	False	NA	NA	NA	30338334	30377038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_30340553_30343530_30343670_30344625_30344727_30344831_30344952_30347107_30347239_30348070_30348168_30348645_30348827_30351391_30351522_30373526_30373712_30374515_30374604_30375581
34666	chr10	+	2897	24	NNC	ENSMUSG00000034453.9	novel	4975	28	NA	NA	95	-27411	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	45.1993693182492	69	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAATCTCGGCGCTAGAA	NA	False	NA	NA	False	NA	NA	NA	84458251	84535631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84535526
34667	SIRV6	+	1784	2	NNC	SIRV6A	novel	783	3	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	NA	NA	NA	9019	10968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_10421_10585
34668	chr4	-	733	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	113	419	3	-137	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	43	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAGACCTGTTGGAACC	NA	False	NA	NA	False	NA	NA	NA	133695199	133692467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
34670	chr7	+	1415	3	NNC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	1	-411	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGAACTCATCCTTCAG	371	False	NA	NA	False	NA	NA	NA	44465807	44479817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465816_44478010_44478391_44478790
34671	chrX	+	2232	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	-18	39	-11	-30	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	1	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTATCAATAAAGTTATGT	NA	False	NA	NA	False	NA	NA	NA	133618700	133622627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
34672	chr11	+	3509	6	NNC	ENSMUSG00000020363.7	novel	2947	19	NA	NA	30172	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.215534267538	150	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCGACTTGTTTGAAT	2244	False	NA	NA	False	NA	NA	NA	49715185	49729439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_49716184_49716554_49717729_49717957_49718073_49723687_49723856_49726438_49726601_49728547
34673	chr5	+	981	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-20	-219	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_4	8278.16896018276	7	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAACTCCGGTCTGGAT	NA	False	NA	NA	False	NA	NA	NA	115697575	115701567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699499_115699578_115700484_115700626_115701341
34676	chr10	+	2282	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	146	1	-7	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	114	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	4382612	4405140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
34677	chr8	-	1319	13	FSM	ENSMUSG00000031708.18	ENSMUST00000163837.2	1272	13	-45	-2	3	0	multi-exon	FALSE	canonical	3	16	junction_10	1132.45025644985	73	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321103	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300337_84300552_84301106_84301158_84320968
34678	chr11	-	2147	12	NIC	ENSMUSG00000000384.16	novel	2324	13	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	201.141946507008	6	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCACATGGGCCACTGGCT	NA	False	NA	NA	False	NA	NA	NA	6576043	6565602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6570741_6571066_6573815_6574284_6575148_6575214_6575964
34679	chr19	-	2249	12	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	25	-19	intron_retention	FALSE	canonical	3	352	junction_6	35.7273883875065	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTAGTATAACTGAT	NA	False	NA	NA	False	NA	NA	NA	6003865	5990588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6001233_6001658_6001815_6003092_6003182_6003718
34680	chr7	-	3481	4	NIC	ENSMUSG00000062116.11	novel	2042	5	NA	NA	15	-5	intron_retention	FALSE	canonical	3	53	junction_1	2.16024689946929	4	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATCTTTAATGACTCTT	6251	False	NA	NA	False	NA	NA	NA	7124472	7117693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_7119200_7119611_7119711_7120784_7122410_7124221
34681	chr6	-	2661	20	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	32	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	202.341295834538	1	88	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCATCCTGTCCTGGCT	3525	False	NA	NA	False	NA	NA	NA	125168534	125144973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150060_125150306_125150488_125150563_125150649_125161445_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
34682	chr3	+	1575	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	0	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1549.07653860259	2	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTTTGAAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	89986971	90007911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994845_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90006880_90007006
34683	chr10	-	4070	4	NIC	ENSMUSG00000019961.18	novel	3772	4	NA	NA	-394	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	377.933268654078	112	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACAGTTTTGTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	91017571	90996282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90999224_90999904_91000064_91001804_91001932_91016728
34684	chr5	+	1341	8	NIC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-2024	77	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	613.617942690594	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAACATACCAAATGTG	NA	False	NA	NA	False	NA	NA	NA	145058464	145064975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145058550_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
34687	chr4	+	3394	15	FSM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	-15	3	-15	0	multi-exon	FALSE	canonical	3	190	junction_3	22.7807876447301	449	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATATTTTGATCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	139350161	139376998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
34688	chr17	+	2732	5	Genic_Genomic	ENSMUSG00000117216.2	novel	547	1	NA	NA	-6674	888	multi-exon	FALSE	non_canonical	0	0	junction_1	0	452	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGGTGGGCAAGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	28120102	28128211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
34689	chr15	-	3607	12	FSM	ENSMUSG00000022378.15	ENSMUST00000164532.3	1770	12	7	-1844	7	-1	multi-exon	FALSE	canonical	3	316	junction_11	247.062410558028	448	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGCCTCATTTGTATATA	8746	False	NA	NA	False	NA	NA	NA	63869811	63800946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63869746
34691	chr8	-	1295	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	100	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	909.417822296333	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTGTGTCCTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	108314990	108307013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307454_108307632_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
34692	chr2	+	2408	4	NNC	ENSMUSG00000074884.13	novel	3056	3	NA	NA	0	4	intron_retention	FALSE	canonical	0	0	junction_3	3191.17745598009	9	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGCATTCTGGGTAGAA	NA	False	NA	NA	False	NA	NA	NA	121279848	121283490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121279923_121280455_121280565_121281201_121281335_121281398
34694	chrX	-	2060	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	-5	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	301.596301185689	282	10	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCTTTTCAGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	47602308	47563832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593797_47602112
34695	chr17	-	2170	8	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	36	-2	intron_retention	FALSE	canonical	3	585	junction_1	52.4832334743046	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCACTGTCCCATCTTCA	NA	False	NA	NA	False	NA	NA	NA	56343532	56323751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
34696	chr1	-	1884	13	NNC	ENSMUSG00000026019.16	novel	10012	13	NA	NA	36	-755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	269.07324230072	4	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGTACAAATGTAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	60136820	60116781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121710_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
34697	chrX	+	2174	7	NNC	ENSMUSG00000040621.15	novel	1928	5	NA	NA	-20	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.3189337389853	159	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATTTGATCTACAACTG	NA	False	NA	NA	False	NA	NA	NA	164953429	164973513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_164953547_164959840_164959999_164960055_164960076_164961529_164961639_164961787_164961827_164963348_164963806_164972239
34698	chr2	-	2938	2	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	34	-6	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	103	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGATCCACAAAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	130471913	130455765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130458626_130471835
34699	chr14	+	1982	14	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	117.888172866387	12	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACATTCTGGAAATGTCT	2	True	NA	NA	False	NA	NA	NA	25842606	25887209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25869287_25869351_25873188_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
34700	chr16	+	1706	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-77	-660	-77	660	mono-exon	FALSE	NA	NA	NA	NA	NA	2	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATCTACCAA	NA	False	NA	NA	False	NA	NA	NA	24348066	24349772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24349800
34701	chr11	+	4317	19	Antisense	novelGene_ENSMUSG00000006920.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	138	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTTCTGCAGACGAATG	2264	False	NA	NA	False	NA	NA	NA	101081948	101109519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_101084130_101084551_101084633_101085293_101085376_101085711_101085805_101086342_101086528_101090085_101090209_101090768_101090811_101091659_101091751_101094077_101094278_101094586_101094770_101098166_101098260_101098961_101099114_101100205_101100304_101101366_101101550_101104549_101104668_101106005_101106124_101107816_101107949_101108067_101108189_101109478
34702	chr5	+	1587	9	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-12	98	intron_retention	FALSE	canonical	0	0	junction_3	598.14096112455	116	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCACTCG	8106	False	NA	NA	False	NA	NA	NA	145051098	145064996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059410_145060378_145060602_145061396_145061505_145062387_145062777_145063536_145063743_145064445_145064537_145064630
34704	chr11	-	1681	12	NIC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	191.53818426898	2944	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAATGTTAATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	59730638	59708627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721134_59723709_59723760_59723857_59723971_59727716_59727847_59730495
34705	chr4	+	2074	10	NNC	ENSMUSG00000028820.14	novel	3465	10	NA	NA	804	-440	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	283.893955162448	4	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTTCATGTATTACTTC	NA	False	NA	NA	False	NA	NA	NA	126915920	126924589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921324_126923778
34706	chr3	+	2419	9	NNC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	-22	71	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	719.202292474099	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTGTGTGAGTTGAAC	4979	False	NA	NA	False	NA	NA	NA	138148908	138161075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138158447_138159639_138160428_138160568_138160845
34707	chr3	-	2971	19	FSM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	21	-537	-16	16	multi-exon	FALSE	canonical	3	210	junction_8	26.6884748788316	432	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCCGTGGCCTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	36054806	36013444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
34708	chr17	+	892	4	Antisense	novelGene_ENSMUSG00000036438.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGGACCTCATCACTGT	NA	False	NA	NA	False	NA	NA	NA	87740890	87743274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_87741484_87742503_87742639_87743030_87743137_87743216
34709	chr17	-	2095	9	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	-4	0	intron_retention	FALSE	canonical	3	585	junction_1	56.6192050014834	579	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	NA	False	NA	NA	NA	56343580	56323749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
34710	chr16	-	2975	12	NNC	ENSMUSG00000003526.13	novel	2386	14	NA	NA	-6	-9	intron_retention	FALSE	canonical	0	0	junction_5	58.423220788251	12	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGTCATCACCTTTCT	8066	False	NA	NA	False	NA	NA	NA	17907033	17889598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895642_17895885_17897050_17897133_17897775_17897851_17898029_17898940_17899394_17899430_17902410_17902620_17906751
34712	chr7	+	1680	10	NNC	ENSMUSG00000073838.11	novel	1679	10	NA	NA	4	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	206.188754468171	65	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGATAACTCAGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	126086553	126089890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088692_126088876_126088963_126089084_126089492
34713	chr18	+	1323	1	ISM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	23716	4246	23641	943	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGTGTCTTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	6788860	6790183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_6788900_6790200
34714	chr2	+	1834	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	42	1492	32	590	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	286	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTACTGTGTTGTTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	118943329	118966279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
34715	chr7	-	2950	11	NNC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	32.6459798443851	147	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCCAGGTGTCTTCTC	597	False	NA	NA	False	NA	NA	NA	67294954	67163166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67229437_67229499_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
34717	chr3	+	3515	9	NIC	ENSMUSG00000028060.15	novel	3636	13	NA	NA	0	706	intron_retention	FALSE	canonical	3	344	junction_7	29.97681395679	4	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAAAGAACGTGTAATGC	-10	True	NA	NA	False	NA	NA	NA	88593120	88617000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88607822_88616086
34718	chr17	-	2471	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_12	499.910221531663	1	74	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5758	False	NA	NA	False	NA	NA	NA	33904375	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889047_33889108_33896247_33896415_33904240
34719	chr17	-	3048	7	FSM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	157	-1	-27	1	multi-exon	FALSE	canonical	3	42	junction_1	8.81286937760152	67	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGAGTTGCGTGGTAA	NA	False	NA	NA	False	NA	NA	NA	36582302	36569763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
34720	chr9	+	940	2	NNC	ENSMUSG00000032336.18	novel	486	2	NA	NA	-74	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATAATACTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	58559184	58560162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_58559454_58559491
34721	chr14	+	1427	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACACGTGTTTCTATATG	6575	False	NA	NA	False	NA	NA	NA	76741953	76745201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744307_76744601
34722	chr10	+	3050	3	ISM	ENSMUSG00000020111.16	ENSMUST00000167872.8	4699	4	9	9142	9	-5004	5prime_fragment	FALSE	canonical	3	180	junction_2	29.5	35	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTGGATTTTTTAATCT	NA	False	NA	NA	False	NA	NA	NA	59538393	59571576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_59538510_59563778_59563941_59568804
34724	chr7	-	3218	15	NNC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	9305	-3	intron_retention	FALSE	canonical	1	1	junction_6	154.462200646538	58	54	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTTTCGGCCTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	27023733	27004569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008814_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27022362_27022566_27022696_27023511
34725	chr18	+	4012	6	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15627	1773	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	99.4653708584048	5	46	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACACGAAGGTGTCGTCT	NA	False	NA	NA	False	NA	NA	NA	82990305	83021598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_82990604_83004868_83005653_83005782_83006324_83011194_83011315_83012594_83012663_83019397
34726	chr3	+	3273	2	ISM	ENSMUSG00000034544.18	ENSMUST00000162620.9	3136	4	10797	-472	5510	472	3prime_fragment	FALSE	canonical	3	385	junction_1	0	14	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCCCCCATACCCACTC	1088	False	NA	NA	False	NA	NA	NA	66903814	66993032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_66903924_66989868
34729	chr6	+	3400	24	NNC	ENSMUSG00000001424.15	novel	3482	24	NA	NA	-31	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	199.607507122881	1	172	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGCCTTACTGTCGTGG	-3	True	NA	NA	False	NA	NA	NA	28480396	28888815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531490_28545475_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795923_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
34730	chr11	-	1700	13	FSM	ENSMUSG00000014195.17	ENSMUST00000239389.2	1399	13	-20	-281	0	0	multi-exon	FALSE	canonical	3	96	junction_12	702.16860016349	5	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5923	False	NA	NA	False	NA	NA	NA	100510453	100473643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100510353
34731	chr1	-	2254	10	ISM	ENSMUSG00000006299.14	ENSMUST00000006462.14	1817	11	15	9	15	-3	intron_retention	FALSE	canonical	3	1233	junction_8	51.7353187858792	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGGCAGTGTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	74323882	74319007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044
34733	chr14	-	823	1	NIC	ENSMUSG00000037572.18	novel	4174	25	NA	NA	3	-3563	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	47514311	47513488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_47513500_47514300
34734	chr15	-	1760	16	NNC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	5	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	224.409585851902	5	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGCTTCTTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	99149821	99140702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99140784_99140913_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
34735	chr17	-	3848	32	NNC	ENSMUSG00000024242.16	novel	4220	34	NA	NA	-29755	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	72.9780660674911	121	19	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTGTTGCGTAGTTGCT	NA	False	NA	NA	False	NA	NA	NA	80988334	80887947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925985_80926025_80931484_80931544_80936714_80936778_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952138_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296
34736	chr9	+	977	3	ISM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	13844	3322	13844	-3322	3prime_fragment	FALSE	canonical	3	85	junction_1	11.5	211	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGACACTTTTCTAATTCA	1884	False	NA	NA	False	NA	NA	NA	72359660	72365985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_72360121_72364059_72364186_72365594
34738	chr18	+	3885	9	NNC	ENSMUSG00000024525.8	novel	5054	8	NA	NA	3	-1178	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_2	474.525223249513	849	99	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGATTTGCCATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	67422324	67454364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67422577_67435245_67435380_67439542_67439621_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
34739	chr7	-	1089	7	NIC	ENSMUSG00000074129.15	novel	734	8	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	332	junction_3	7433.61662576763	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44777965
34740	chr15	-	1601	11	NNC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	562.869336524917	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGAAGTCCCTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	75952768	75942037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942597_75942815_75943438_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
34741	chr18	+	3971	9	NNC	ENSMUSG00000041915.10	novel	3385	8	NA	NA	8	1321	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	33.2863992495434	3	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGGACAAAAACTGTCT	6929	False	NA	NA	False	NA	NA	NA	31892940	31917117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696_31914951_31915677
34742	chr13	-	1595	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	-99	-154	-99	154	mono-exon	FALSE	NA	NA	NA	NA	NA	2	72	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAAAAATACTAT	NA	False	NA	NA	False	NA	NA	NA	112731717	112730122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112730100_112731700
34743	chr19	+	1111	8	Antisense	novelGene_ENSMUSG00000025027.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGCTGGAAATCGTTGGGA	NA	False	NA	NA	False	NA	NA	NA	52979621	52990933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_52980151_52983851_52983953_52984681_52984757_52985330_52985504_52986303_52986374_52987581_52987643_52988818_52988891_52990903
34744	chr7	+	882	5	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	27056	5574	27056	-5574	internal_fragment	FALSE	canonical	3	108	junction_1	5.1478150704935	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAATACAGAGTCATAA	NA	False	NA	NA	False	NA	NA	NA	80791653	80814590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273
34745	chr11	-	1912	12	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	-44	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.795598867157	2	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTGCTTACTCGGTGGG	NA	False	NA	NA	False	NA	NA	NA	60701961	60679722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692392_60692741_60692858_60695088_60695235_60697771_60697869_60701729
34746	chr11	+	1386	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-2	-35	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTGGACAGTCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653617	120655210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654343_120654549
34747	chr3	+	1728	14	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-43	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	391.781804386728	1	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAAGCGTGCTGGATT	NA	False	NA	NA	False	NA	NA	NA	32762870	32781114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774413_32774605_32774665_32776768_32776865_32779395_32779483_32780670
34748	chr1	-	3278	10	FSM	ENSMUSG00000025938.17	ENSMUST00000188454.7	8463	10	-96	5281	-96	-482	multi-exon	FALSE	canonical	1	1	junction_1	2.330686329267	5	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTGGTTGAGTTGAATA	NA	False	NA	NA	False	NA	NA	NA	13062970	12942053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_12942553_12946533_12946599_12949361_12949604_12951516_12951677_12964650_12964850_12991261_12991427_13009212_13009425_13014203_13014337_13059803_13061188_13062751
34749	chr17	-	2008	15	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	688.124933038607	1	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCCATAGCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	45906482	45896137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896341_45896404_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
34750	chr16	-	1783	8	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18084	5210	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATAATATTAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	38411746	38384474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38384661_38393409_38393638_38396103_38396187_38402327_38402487_38405535_38405879_38406580_38406771_38408544_38408664_38411271
34751	chr14	-	1654	10	Antisense	novelGene_ENSMUSG00000040618.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGAGGTTGGGCGGGAGG	2966	False	NA	NA	False	NA	NA	NA	55785853	55777845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55777970_55779861_55780106_55781045_55781229_55781314_55781520_55781850_55782037_55782337_55782503_55782661_55782880_55785150_55785290_55785494_55785591_55785759
34752	chr6	-	1472	7	NIC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	-16	-3	combination_of_known_splicesites	FALSE	canonical	1	6	junction_3	330.764476461559	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGGCATTTTCTGACT	NA	False	NA	NA	False	NA	NA	NA	33037211	32769161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_32769862_32780824_32780961_32829079_32829151_32945135_32945254_32985417_32985500_33026271_33026360_33036934
34753	chrX	-	2435	12	NNC	ENSMUSG00000085396.8	novel	715	5	NA	NA	1	20659	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	34.0347416085922	4	57	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGGTAATTGGCAGCCAT	NA	False	NA	NA	False	NA	NA	NA	49724179	49683612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49684260_49689540_49689776_49694884_49695096_49697347_49697485_49697563_49697692_49700981_49701119_49701581_49701728_49704237_49704393_49715313_49715387_49716083_49716187_49719767_49719873_49723821
34756	chr6	+	847	6	ISM	ENSMUSG00000040112.10	ENSMUST00000036111.10	4162	8	5414	3096	3583	-4	3prime_fragment	FALSE	canonical	3	595	junction_2	39.4796149930569	155	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTAAGACTATTGTCTTAC	NA	False	NA	NA	False	NA	NA	NA	146949675	146972393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
34757	chr11	+	1985	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-9	-790	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	298.965938951348	7	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCAATTGGATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	3913999	3929214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920676_3923248_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
34758	chr3	-	2237	5	NIC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	38	4130	intron_retention	FALSE	canonical	3	722	junction_1	31.5307389700908	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCATTGAGGCCGTCAG	NA	False	NA	NA	False	NA	NA	NA	131065712	131034619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
34760	chr18	+	2313	8	NNC	ENSMUSG00000073639.7	novel	6515	7	NA	NA	-14	940	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	473.488400392367	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACATTTTGTGTCTTGTCT	-7	True	NA	NA	False	NA	NA	NA	6765188	6790180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_6765333_6770053_6770110_6778494_6778539_6782419_6782521_6783111_6783193_6784569_6784689_6784938_6785006_6788479
34761	chr14	-	1841	14	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	239.621644565717	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30741018	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30735071_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
34762	chr1	+	4336	35	FSM	ENSMUSG00000064294.13	ENSMUST00000040999.14	4606	35	22	248	20	-248	multi-exon	FALSE	canonical	3	19	junction_6	6.33501009795379	41	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTTCTGTGCTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	58152316	58239609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374_58177456_58180509_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205121_58206761_58206896_58208936_58209025_58209815_58209903_58210900_58211093_58211279_58211508_58215632_58215729_58216677_58216807_58218475_58218551_58219764_58219818_58222624_58222740_58225435_58225502_58227493_58227683_58233784_58233953_58239328
34763	chr2	-	2129	17	FSM	ENSMUSG00000027639.17	ENSMUST00000139263.8	2036	17	-91	-2	-5	2	multi-exon	FALSE	canonical	3	34	junction_1	54.3495630157226	341	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAATATCTGCGGTTAGTT	NA	False	NA	NA	False	NA	NA	NA	156977131	156941318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156941424_156943240_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
34764	chr6	+	2553	19	Intergenic	novelGene_4162	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGGAGGTCGGGATGGC	NA	False	NA	NA	False	NA	NA	NA	47507218	47572289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517786_47519295_47519343_47520880_47520973_47521371_47521548_47522612_47522853_47524281_47524373_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533083_47535109_47535229_47553469_47553599_47554477_47554602_47572117
34765	chr9	-	3039	7	ISM	ENSMUSG00000036986.17	ENSMUST00000126690.8	4206	8	2246	1023	2204	-568	3prime_fragment	FALSE	canonical	3	33	junction_1	134.275111452404	1	125	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTCTCTGGGTGGTT	4518	False	NA	NA	False	NA	NA	NA	58154702	58126392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257
34766	chr1	-	2379	9	NIC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	-5	-5	combination_of_known_splicesites	FALSE	canonical	3	32	junction_8	301.348531604187	65	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAAGTGTTTATTATGT	NA	False	NA	NA	False	NA	NA	NA	65225643	65197781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225367
34767	chrX	-	1312	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGCAAAAAAAAAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	135642033	135633705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634189_135634663_135635251_135636294_135636372_135640553_135640644_135641958
34774	chr19	-	4053	18	NIC	ENSMUSG00000024969.16	novel	3018	18	NA	NA	6	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	83.0892712064523	208	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGAGCTGCTGCCTACTG	3866	False	NA	NA	False	NA	NA	NA	7319219	7252766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
34775	chr17	+	3962	4	NNC	ENSMUSG00000041429.4	novel	968	3	NA	NA	0	-259	intron_retention	TRUE	non_canonical	0	0	junction_3	93.395217579203	2	125	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACCCAGGTACAGTGTAG	908	False	NA	NA	False	NA	NA	NA	24851655	24857494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24851829_24852900_24853140_24853698_24854785_24855030
34776	chr5	+	1996	4	ISM	ENSMUSG00000004455.17	ENSMUST00000128309.8	2492	6	10662	5	82	-1	3prime_fragment	FALSE	canonical	3	2917	junction_2	70.5265907300218	11	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAACTTGTTCGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	122307080	122313327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122307213_122309884_122309990_122310794_122311344_122312117
34777	chr8	-	1692	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	-16	-1	-16	1	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	2078	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTGGTACTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83500805	83490248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
34778	chr15	-	1440	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	764.90865013775	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2687	False	NA	NA	False	NA	NA	NA	43146091	43113453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43114997_43115628_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
34781	chr5	-	3741	11	NNC	ENSMUSG00000029097.12	novel	3790	11	NA	NA	-9	-10	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	21.9474372080204	110	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAGTCCCAATTTAATAG	7636	False	NA	NA	False	NA	NA	NA	35732404	35713556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730238_35731423_35731539_35731902
34782	chr13	-	1989	14	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	22	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	197.791714007886	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCATATAGGCCTCCCGC	NA	False	NA	NA	False	NA	NA	NA	104953439	104767653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943209_104944201_104944341_104947724_104947822_104953194
34783	chr9	+	4188	16	Intergenic	novelGene_1014	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	125	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCAGAGCCGGCGCGCGT	NA	False	NA	NA	False	NA	NA	NA	37141896	37166689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_37144673_37144916_37145008_37145136_37145220_37145456_37145528_37145688_37145738_37146380_37146464_37146773_37146840_37148174_37148266_37148598_37148748_37149031_37149071_37149511_37149678_37150425_37150506_37150916_37151068_37152562_37152679_37153174_37153260_37166597
34784	chr18	-	3651	10	NNC	ENSMUSG00000056124.6	novel	5808	9	NA	NA	683	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	98.9522892891092	55	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTGGTGATGTCATT	NA	False	NA	NA	False	NA	NA	NA	20878778	20817658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_20817805_20819275_20821526_20821991_20822094_20822277_20822401_20825448_20825637_20833795_20833913_20839461_20839587_20853085_20853200_20861018_20861136_20878409
34786	chr7	-	3411	15	NIC	ENSMUSG00000025507.14	novel	3357	16	NA	NA	-3	1	intron_retention	FALSE	canonical	3	24	junction_12	13.8808707013851	80	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATACCTTTGCAGAGATCA	NA	False	NA	NA	False	NA	NA	NA	141023924	141018028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021288_141021387_141021443_141021524_141021735_141022063_141022478_141022880_141023267_141023881
34787	chr11	-	1943	14	ISM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	101	6402	72	5471	5prime_fragment	FALSE	canonical	3	283	junction_10	55.5226911340691	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGTTCACTTGTGTGAG	1202	False	NA	NA	False	NA	NA	NA	107080106	107063890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
34788	chr14	-	4425	1	NIC	ENSMUSG00000034248.8	novel	4174	4	NA	NA	37594	-1098	mono-exon	FALSE	NA	NA	NA	NA	NA	17	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTAAAGTCAAATTTAAAT	2780	False	NA	NA	False	NA	NA	NA	69484822	69480397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_69480400_69484800
34791	chr4	-	3558	15	NNC	ENSMUSG00000034636.10	novel	8691	14	NA	NA	41	-3176	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	36.3031454194666	48	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGTTTTGTGTACTGAA	NA	False	NA	NA	False	NA	NA	NA	108158252	108090096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108090453_108092368_108093392_108094538_108094637_108099017_108099071_108099196_108099395_108101922_108101971_108102072_108102235_108107691_108107743_108107970_108108071_108109348_108109414_108112397_108112575_108117146_108117288_108123014_108123770_108129414_108129581_108158087
34792	chr16	+	5257	19	Antisense	novelGene_ENSMUSG00000035629.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	15	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAACTACAATTCCCAAAA	598	False	NA	NA	False	NA	NA	NA	32642109	32688727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_32644519_32644750_32644845_32645934_32646087_32646503_32646567_32647054_32647294_32647657_32647722_32648227_32648368_32649028_32649172_32649634_32649693_32656283_32656388_32656780_32656990_32658606_32658726_32663369_32663907_32664920_32665077_32667586_32667694_32668199_32668360_32670047_32670130_32677259_32677411_32688457
34793	chr5	+	2114	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	-5	-1042	2	-4	multi-exon	FALSE	canonical	3	123	junction_1	5077.72757835629	507	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACTGTTTTGTTAGTGAT	NA	False	NA	NA	False	NA	NA	NA	146770006	146773838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
34794	chr9	+	3200	15	NNC	ENSMUSG00000032058.15	novel	3430	15	NA	NA	5	-189	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	155.665211795267	2	99	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATTGTGTAAATGCTTT	21	True	NA	NA	False	NA	NA	NA	50768270	50792542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_50768399_50769135_50769227_50770150_50770245_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
34795	chr15	-	4020	17	NIC	ENSMUSG00000022246.15	novel	4759	18	NA	NA	-91	-800	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	36.5957114119947	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGAATTTCTGTAGTCTA	6	True	NA	NA	False	NA	NA	NA	10714801	10569854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
34799	chr10	-	3919	15	NIC	ENSMUSG00000036676.15	novel	5993	14	NA	NA	5	-2120	combination_of_known_junctions	FALSE	canonical	3	18	junction_14	29.291288668079	13	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATTCTTACCTACCTAAG	NA	False	NA	NA	False	NA	NA	NA	100323183	100281883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_100283606_100284685_100284913_100286100_100286271_100287243_100287348_100292909_100293022_100294776_100294898_100296821_100296971_100301882_100302136_100307190_100307364_100307776_100307893_100310236_100310337_100312418_100312638_100313666_100313885_100320912_100320988_100323023
34800	SIRV6	+	1403	10	NNC	SIRV6A	novel	1528	10	NA	NA	-14	41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9634.36786960689	1	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGAAGTTTGCGTTT	NA	False	NA	NA	False	NA	NA	NA	1110	11731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1728_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
34801	chr16	+	1719	10	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	292.972800321796	1	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGATGTTATCTTTCAT	7070	False	NA	NA	False	NA	NA	NA	38379059	38411664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273_38411435_38411476
34802	chr9	+	1772	13	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-3	-2	intron_retention	FALSE	canonical	2	10	junction_2	719.35617433616	2	53	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGTGACAACTGATCT	1145	False	NA	NA	False	NA	NA	NA	108437634	108442766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438279_108438795_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
34803	chr6	-	3099	12	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-30	-24	intron_retention	FALSE	canonical	0	0	junction_7	291.105814166125	1	156	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9142	False	NA	NA	False	NA	NA	NA	88495840	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491296_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
34804	chr6	-	1834	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1747.62809276381	1	55	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9286	False	NA	NA	False	NA	NA	NA	128415623	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407555_128409461_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
34807	chr19	-	2114	11	NIC	ENSMUSG00000024926.11	novel	2154	14	NA	NA	-30	-3	intron_retention	FALSE	canonical	3	118	junction_8	107.526554859718	103	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGAGCTATCAGGAGTTC	3729	False	NA	NA	False	NA	NA	NA	5659976	5653047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879
34809	chr2	+	2550	13	NNC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	-16	-313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	184.973796943123	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTTTCATGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	25162590	25175614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25162690_25162926_25163550_25163817_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168476_25169175_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
34810	chr7	-	1548	10	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	604.630241052382	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	79765080	79744593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
34811	chr16	+	1828	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-15	-190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1251.83484933117	2	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTTGTCCAGTTACAAA	1409	False	NA	NA	False	NA	NA	NA	20354283	20362616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359865_20359964_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361451_20362022
34813	chr17	-	3561	2	ISM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	0	2	0	-1	intron_retention	FALSE	canonical	3	21077	junction_1	0	1	182	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCGTCTCAGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	34174637	34170974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34171093_34171194
34817	chr8	-	2995	8	NNC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_6	113.023205130447	482	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	112660426	112638642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112658190_112658289_112659991_112660162_112660259
34818	chr19	+	1802	16	Antisense	novelGene_ENSMUSG00000041360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	29	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTCTGAAAAACAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	27367452	27404524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_27367714_27371637_27371727_27373689_27373783_27376281_27376507_27377080_27377221_27389580_27389662_27393284_27393339_27394133_27394198_27396187_27396273_27397416_27397522_27398696_27398872_27399754_27399821_27400052_27400150_27400907_27400984_27401617_27401713_27404428
34819	SIRV7	-	2376	5	NNC	SIRV7A	novel	2462	5	NA	NA	-2	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	999.334028240808	1	108	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTATTCTTCCAAGCG	NA	False	NA	NA	False	NA	NA	NA	147920	1024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2998_3112_43028_43078_114680_114983_147659
34820	chr5	+	1412	11	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	-518	-291	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1368.42253708422	1	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGTTCCGTAAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	129866226	129874921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129866256_129867610_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
34821	chr7	+	1648	6	NIC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	-16	-1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	836.845170864957	149	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTGATTGTGATGCCT	NA	False	NA	NA	False	NA	NA	NA	115692554	115704441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_115692761_115696996_115697189_115698674_115698759_115701178_115701240_115702445_115702556_115703446
34823	chr1	+	1477	12	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	265.216892373016	2154	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	42890442	42944843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42927014_42927123_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
34824	chr19	+	4697	30	ISM	ENSMUSG00000024921.18	ENSMUST00000176030.8	5862	34	35503	-37	17167	-9	3prime_fragment	FALSE	canonical	2	7	junction_24	7.54881064881434	32	53	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCTTGACTCTGTCGCCT	NA	False	NA	NA	False	NA	NA	NA	26618021	26755712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_26618050_26624420_26624548_26626383_26626558_26628948_26629123_26631740_26631912_26641450_26641505_26646152_26646284_26646513_26646572_26648483_26648585_26650098_26650247_26654033_26654198_26655715_26655783_26656473_26656585_26659270_26659514_26661208_26661323_26668744_26668853_26669580_26669668_26673575_26673623_26675745_26675913_26683467_26683632_26687857_26688086_26693514_26693593_26698128_26698348_26729223_26729442_26737277_26737332_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
34827	chr14	+	1286	6	Antisense	novelGene_ENSMUSG00000023110.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTCTTCAAACTGCCAGT	NA	False	NA	NA	False	NA	NA	NA	54744653	54748483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_54745407_54746350_54746416_54746746_54746865_54747002_54747097_54747292_54747401_54748335
34828	chr3	-	2362	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	71	500	-33	-2	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	1	80	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATTAGTATGATATTT	NA	False	NA	NA	False	NA	NA	NA	95763126	95737935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
34829	chr10	-	2555	11	NIC	ENSMUSG00000039480.15	novel	2743	12	NA	NA	17	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	27.8569560433296	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTTATAGATGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	34294507	34179614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274195_34275733_34275814_34283530_34283603_34287363_34287456_34294356
34830	chr6	+	1182	10	ISM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	1817	3920	1693	-3920	internal_fragment	FALSE	canonical	0	0	junction_4	258.465175436809	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACAGGAGTCATCTCCA	7254	False	NA	NA	False	NA	NA	NA	125110688	125117796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752
34831	chr5	-	1973	12	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10659	-8002	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	91	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGTCTTACGCACCCGG	3894	False	NA	NA	False	NA	NA	NA	129875172	129864446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864475_129865264_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129869013_129869091_129869180_129871361_129871564_129872192_129872314_129873808_129873974_129874591
34832	chr16	-	2898	8	NIC	ENSMUSG00000022710.18	novel	4488	31	NA	NA	2518	-3	intron_retention	FALSE	canonical	2	677	junction_4	117.571515361884	2	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCGATGACTGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	8512927	8507466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8511644_8511733_8511843_8512276_8512345_8512894
34833	chr7	-	1748	15	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	16	1	combination_of_known_junctions	FALSE	canonical	3	257	junction_2	575.856221426062	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGTGTCCTCAGAG	9198	False	NA	NA	False	NA	NA	NA	45084031	45071319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45071430_45071515_45071559_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
34834	chr19	+	3136	11	NNC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	17	0	intron_retention	FALSE	canonical	2	11	junction_8	24.8467301671669	12	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4286	False	NA	NA	False	NA	NA	NA	5074115	5081992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079279_5079349_5079436_5080519_5081029
34835	chr5	-	1305	13	Antisense	novelGene_ENSMUSG00000107165.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCGACCGATCCGTCTGC	NA	False	NA	NA	False	NA	NA	NA	74745735	74696171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_74696422_74697460_74697503_74697598_74697640_74701589_74701650_74702668_74702773_74706071_74706136_74706711_74706819_74707349_74707491_74717704_74717808_74725176_74725286_74731757_74731859_74733092_74733245_74745704
34836	chr7	+	3943	11	ISM	ENSMUSG00000030770.16	ENSMUST00000106640.2	1465	13	25046	-2710	-24503	-12	3prime_fragment	FALSE	canonical	3	16	junction_8	4.51220566907139	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAACATACAAACTCTTCGC	NA	False	NA	NA	False	NA	NA	NA	112143953	112190887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_112144011_112146717_112146821_112159135_112159277_112166969_112167086_112172077_112172137_112174561_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
34837	chr4	-	1393	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3612.9610898451	9	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	NA	NA	NA	119151697	119135177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151531
34838	chr8	-	3132	12	NIC	ENSMUSG00000036180.16	novel	3363	13	NA	NA	143	-12	combination_of_known_splicesites	FALSE	canonical	3	148	junction_2	313.771143635791	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTAACTCCATGCTCAC	NA	False	NA	NA	False	NA	NA	NA	70426778	70361318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70362625_70364326_70364520_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70426739
34839	chr4	-	2213	9	NNC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	60.3208867225939	480	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	4	True	NA	NA	False	NA	NA	NA	34687413	34663256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34664231_34668925_34669061_34669486_34669664_34671004_34671204_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
34840	chr11	-	2040	14	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	107.105710100324	529	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	NA	False	NA	NA	NA	120508737	120500912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
34841	chr18	-	2298	5	NNC	ENSMUSG00000047989.12	novel	2498	5	NA	NA	-14	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	326.880998988929	6	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTGGGGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	24254906	24237816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24239716_24244771_24244840_24245717_24245767_24247163_24247245_24254705
34842	chr2	+	1161	7	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-11	-6	intron_retention	FALSE	canonical	3	2861	junction_1	835.210834992512	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26800843_26801017_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
34843	chr12	-	2949	11	NNC	ENSMUSG00000042628.9	novel	4036	12	NA	NA	-9265	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	38.7479031690748	67	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAAAGCTTGGCCATCG	NA	False	NA	NA	False	NA	NA	NA	83653261	83593630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83653189
34845	chr11	-	1469	8	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-69217	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	1495.16323591801	1	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	3004	False	NA	NA	False	NA	NA	NA	106749228	106672373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676075_106749212
34846	chr19	+	3864	5	FSM	ENSMUSG00000047731.18	ENSMUST00000099376.11	3911	5	23	24	13	-24	multi-exon	FALSE	canonical	3	116	junction_1	18.7666592658363	49	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATAAAATCAGTCTCAAGT	NA	False	NA	NA	False	NA	NA	NA	46587575	46645797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46587733_46595150_46595199_46632791_46632895_46640912_46641075_46642403
34847	chr13	+	2403	27	ISM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	9	4044	9	-4044	5prime_fragment	FALSE	canonical	3	419	junction_25	58.1154737055775	6	47	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCTCCCAACAGGTGAG	NA	False	NA	NA	False	NA	NA	NA	18901468	19046937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907
34848	chr7	+	6058	26	ISM	ENSMUSG00000032743.16	ENSMUST00000069660.13	6148	28	45057	1	-33283	-1	3prime_fragment	FALSE	canonical	3	8	junction_11	4.5254833995939	42	50	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGTGTGGTACACTGGA	2273	False	NA	NA	False	NA	NA	NA	125352143	125473964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_125352222_125359472_125359643_125360923_125361022_125369743_125369876_125394387_125394653_125396745_125396878_125411951_125412122_125412764_125412831_125413952_125414060_125415750_125415854_125419139_125419356_125428900_125429039_125441751_125442626_125449470_125450176_125451108_125451318_125453731_125453811_125459699_125459878_125464416_125464583_125465497_125465656_125466774_125466840_125467910_125468022_125469814_125469955_125471322_125471425_125471858_125472020_125472103_125472193_125472618
34849	chr17	+	3426	6	ISM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	15751	12	-956	-12	3prime_fragment	FALSE	canonical	3	323	junction_1	15.3362316101447	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTATCCTCCATTTTAC	NA	False	NA	NA	False	NA	NA	NA	8400122	8415295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
34851	chr9	-	2933	17	NIC	ENSMUSG00000032498.10	novel	2754	19	NA	NA	12	-4	intron_retention	FALSE	canonical	3	11	junction_9	92.8001885773946	9	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGATTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	111100590	111057326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_111057695_111058907_111059022_111059310_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
34852	chr13	+	1854	3	NNC	ENSMUSG00000039219.19	novel	571	5	NA	NA	-10368	-56823	intron_retention	FALSE	non_canonical	0	0	junction_1	0	30	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATCCCTATCACACTGCG	NA	False	NA	NA	False	NA	NA	NA	14227448	14237981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_14229041_14229734_14229804_14237788
34853	chr2	-	2685	1	Intergenic	novelGene_2570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCACGTAAGGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	17953479	17950794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_17950800_17953500
34854	chr17	-	1659	7	NNC	ENSMUSG00000024026.14	novel	2024	7	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1204.05135549389	6	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	30831575	30811834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30812625_30812847_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
34855	chr7	-	2428	16	FSM	ENSMUSG00000038520.16	ENSMUST00000139947.8	2411	16	-145	128	19	3	multi-exon	FALSE	canonical	3	189	junction_3	26.7432234407148	433	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGGCTGGCATCAGGACA	7722	False	NA	NA	False	NA	NA	NA	44498480	44490452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44490845_44490966_44491054_44491406_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
34856	chr2	+	2375	9	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	30	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	421.672858979565	1	123	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8599	False	NA	NA	False	NA	NA	NA	72306532	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314960_72315093_72315519_72315657_72316063
34858	chr2	+	4421	2	Antisense	novelGene_ENSMUSG00000040321.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTCAGCGCGGCGACTGG	NA	False	NA	NA	False	NA	NA	NA	114023765	114031895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_114028109_114031817
34860	chr9	+	3055	10	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	16.2283093602309	1	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGGCTTTATGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	75375888	75393960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_75375966_75377558_75377649_75379458_75379554_75380603_75380689_75383697_75383793_75385260_75385396_75386953_75387087_75388729_75388947_75390380_75390480_75391931
34861	chr7	-	2815	19	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-5	-59	intron_retention	FALSE	canonical	3	8	junction_15	52.6502846064084	2	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTCCCTTCACTCTCCC	NA	False	NA	NA	False	NA	NA	NA	140697724	140682613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140688853_140688901_140689583_140689685_140690288_140690426_140690543_140690670_140691067_140691143_140697626
34862	chr8	+	1932	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210878.2	1916	10	-18	2	-1	-2	multi-exon	FALSE	canonical	3	300	junction_1	45.5894183087303	768	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCTCCTTGTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	71047121	71049936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
34863	chr17	-	2697	8	NIC	ENSMUSG00000024142.16	novel	3358	9	NA	NA	0	731	intron_retention	FALSE	canonical	3	60	junction_7	10.3509833901353	3	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTCACGTTCTGCCCG	9587	False	NA	NA	False	NA	NA	NA	24698052	24693544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24697000_24697084_24697137_24697293_24697453_24697985
34864	chr4	+	2084	8	FSM	ENSMUSG00000028483.14	ENSMUST00000137512.8	1993	8	0	-91	0	91	multi-exon	FALSE	canonical	2	14	junction_2	136.304730628972	13	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTGACAAGTGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	83335980	83372361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_83336292_83336942_83337021_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
34865	chr11	+	2578	14	ISM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	297	675	261	173	3prime_fragment	FALSE	canonical	3	655	junction_7	78.2339837475873	1	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCACCCAGTTCAGGGA	NA	False	NA	NA	False	NA	NA	NA	74789200	74799493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
34866	chrX	+	1669	7	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-1793	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1015.98038312208	28	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74147761	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301_74152463_74152608
34868	chr11	-	2335	13	ISM	ENSMUSG00000020917.18	ENSMUST00000107385.2	1741	15	0	2816	0	-2816	5prime_fragment	FALSE	canonical	3	3569	junction_6	201.05394176688	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATACCCTGGTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	100418695	100394220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
34869	chr1	-	1177	10	ISM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	73	12181	20	2	5prime_fragment	FALSE	canonical	3	65	junction_9	38.1284379142101	69	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAAAGTGTGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	169358960	169337683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
34870	chr1	+	2433	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	17	-83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	782.218892038366	1	110	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGTAATAAGGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	4928053	4968045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937745_4948244_4948356_4956966_4957055_4959679_4959826_4960962_4961031_4962156_4962293_4963639_4963787_4965156_4965229_4966578
34871	chr2	-	3445	19	ISM	ENSMUSG00000014355.11	ENSMUST00000110333.2	4214	28	1	16846	0	677	5prime_fragment	FALSE	canonical	3	297	junction_13	34.2219065642008	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATAGTCCCTTGTAACT	NA	False	NA	NA	False	NA	NA	NA	128529295	128500842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
34873	chr12	-	724	5	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	1524	-14	-22	5prime_fragment	FALSE	canonical	3	7551	junction_3	152.294123327199	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTGGCATATGGTACGAGC	NA	False	NA	NA	False	NA	NA	NA	111638731	111637318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
34874	chr4	-	2137	3	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGGTTTTATGTGAAGA	NA	False	NA	NA	False	NA	NA	NA	145178218	145173296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145173343_145176038_145176265_145176353
34875	chr15	-	1755	9	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	354	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.608934471385	2	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACTTTGCAAATCCCGA	NA	False	NA	NA	False	NA	NA	NA	83056439	83037715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038632_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
34881	chr15	-	2149	16	NNC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	160.183172926774	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGCTGGCAGCAGAGT	NA	False	NA	NA	False	NA	NA	NA	76361468	76337188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338081_76338485_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
34882	chr15	+	2950	10	Antisense	novelGene_ENSMUSG00000022314.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGCGACGTCAATATCAC	NA	False	NA	NA	False	NA	NA	NA	51826018	51837320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_51827644_51828350_51828434_51829976_51830128_51831183_51831326_51831739_51831911_51833308_51833546_51835144_51835267_51835599_51835724_51836481_51836687_51837230
34883	chr5	+	1257	4	Antisense	novelGene_ENSMUSG00000040731.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCAGCGAGGAAGGACCC	NA	False	NA	NA	False	NA	NA	NA	134653400	134668182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_134654317_134654394_134654459_134656440_134656628_134668092
34885	chr1	+	5766	26	Genic_Genomic	ENSMUSG00000104302.2	novel	1828	5	NA	NA	-42582	349756	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCCGCCGCGGCCGAAGC	4401	False	NA	NA	False	NA	NA	NA	160049311	160620398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_160051942_160054056_160054252_160059364_160059438_160064195_160064280_160066100_160066205_160075027_160075140_160085012_160085102_160169601_160169737_160219753_160219791_160269390_160269536_160270759_160270887_160281320_160281395_160299566_160299681_160454783_160454935_160472876_160472972_160509610_160509753_160528281_160528449_160529927_160530030_160537715_160537784_160549702_160549814_160551601_160551755_160561093_160561279_160563121_160563329_160566465_160566659_160568321_160568502_160620305
34886	chr13	-	4595	14	NIC	ENSMUSG00000021147.18	novel	4526	14	NA	NA	97	-2	intron_retention	FALSE	canonical	3	18	junction_13	18.3112472308122	57	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTACTATTATAAAGGTTT	NA	False	NA	NA	False	NA	NA	NA	8920918	8853032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920672
34887	chr14	-	901	7	ISM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-43	5833	-23	1662	5prime_fragment	FALSE	canonical	3	4955	junction_2	264.1296504034	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTTTGCGTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	36857252	36847881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
34888	chr4	-	1814	4	NIC	ENSMUSG00000003038.16	novel	711	5	NA	NA	-2	-14	intron_retention	FALSE	canonical	3	1835	junction_2	564.771536896902	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGGCTTGGAATGCTGCC	NA	False	NA	NA	False	NA	NA	NA	133695207	133692062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133692885_133693261_133694107_133694267_133694313_133695105
34889	chr5	+	1620	9	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-13	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	888.512160510479	1	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGTTTGTTCACTGTGA	NA	False	NA	NA	False	NA	NA	NA	45650832	45670014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652618_45660740_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
34890	chr17	-	2811	3	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	4	7	intron_retention	FALSE	canonical	3	19	junction_2	1	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACATTGCTGTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	79202525	79192318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79192646_79198274_79198370_79200136
34891	chr3	-	1462	12	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	306.927966890448	7	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGGTTTTTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	157630700	157600059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600392_157602919_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
34892	chr14	-	2132	8	NIC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	-31	-2	intron_retention	FALSE	canonical	3	11	junction_5	56.8549891910848	7	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATTTCTGAAGTGAAATT	NA	False	NA	NA	False	NA	NA	NA	52542475	52532315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52532551_52533530_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52537157_52537563_52537640_52537859_52542344
34893	chr17	-	1790	7	NNC	ENSMUSG00000024026.14	novel	2024	7	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1516.8193421323	3	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	30831555	30811834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30812319_30812364_30813171_30815343_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
34894	chr2	-	5345	2	FSM	ENSMUSG00000050714.10	ENSMUST00000067043.5	5267	2	-84	6	-70	-6	multi-exon	FALSE	canonical	3	22	junction_1	0	53	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTAACCTGTGGTGTCATT	NA	False	NA	NA	False	NA	NA	NA	37333217	37322185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_37327012_37332698
34895	chr1	+	2356	20	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	3006	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	156.266322139171	1	37	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	3328	False	NA	NA	False	NA	NA	NA	72349591	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364287_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
34896	chr4	-	2382	3	NNC	ENSMUSG00000066042.5	novel	1675	3	NA	NA	8	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	133.5	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCAGTTGTGATTCTGAT	1055	False	NA	NA	False	NA	NA	NA	132191224	132186044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132186356_132186402_132187425_132190175
34898	chr15	+	2280	7	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-10	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	111.321855695796	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	NA	False	NA	NA	NA	100125741	100159129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100125964_100130613_100130713_100143172_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
34899	chr19	-	2397	10	Antisense	novelGene_ENSMUSG00000064646.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCAGCGCTCCTCCCGGG	NA	False	NA	NA	False	NA	NA	NA	38062862	38043629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38043764_38045855_38045928_38046234_38046430_38048652_38048803_38051048_38051120_38057527_38057677_38058085_38058395_38059514_38059594_38060218_38060344_38061749
34900	chr11	-	1825	11	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	2973	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1050.66771626428	2	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGACGGCTGAAAATTC	8174	False	NA	NA	False	NA	NA	NA	88843318	88814849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88835153_88835351_88837970_88838061_88843231
34901	chr9	-	2453	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	-32	1151	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	406.883075016268	2	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTTACACTTTGTGCA	NA	False	NA	NA	False	NA	NA	NA	96993118	96959818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962204_96962536_96967109_96967177_96972145_96972228_96975129_96975231_96979155_96979234_96982127_96982293_96992963
34903	chr16	+	2851	18	NIC	ENSMUSG00000022779.17	novel	2950	19	NA	NA	-4	1	combination_of_known_junctions	TRUE	canonical	3	287	junction_1	39.4304608859032	222	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTGGAACAAAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	16688626	16710840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
34904	chr2	-	2356	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	56	5	38	-1	multi-exon	FALSE	canonical	3	148	junction_2	89.5	292	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAACCACAGCCTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	152673592	152622592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152624203_152671346_152672023_152673522
34906	chr19	+	1474	8	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	151	-297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3283.90515411522	5	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	994	False	NA	NA	False	NA	NA	NA	8944555	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947425_8954361_8954855_8954948_8955074_8955307
34907	chr1	-	2212	15	ISM	ENSMUSG00000025912.17	ENSMUST00000088658.11	4980	16	90	4244	90	-2122	5prime_fragment	FALSE	canonical	1	5	junction_9	11.2088248760537	15	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAACAAAACATATACACTT	NA	False	NA	NA	False	NA	NA	NA	9770344	9741883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_9741984_9742436_9742542_9742764_9742882_9743325_9743441_9743969_9744113_9746191_9746561_9748496_9748731_9752009_9752115_9753321_9753394_9755860_9756036_9757785_9758007_9760305_9760399_9762942_9763015_9763511_9763618_9770159
34908	chr1	-	2674	2	ISM	ENSMUSG00000025912.17	ENSMUST00000088658.11	4980	16	28551	4	6952	-4	3prime_fragment	FALSE	canonical	3	13	junction_1	0	58	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACAAGCTGGCTTGGCA	6530	False	NA	NA	False	NA	NA	NA	9741883	9737643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_9740238_9741803
34910	chr9	+	2677	9	FSM	ENSMUSG00000034563.17	ENSMUST00000037977.15	3151	9	122	352	-27	-12	multi-exon	FALSE	canonical	1	1	junction_8	60.1040764008565	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAAACTAAAGGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	72892832	72923270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920275_72922613
34911	chr17	-	2989	16	Antisense	novelGene_ENSMUSG00000024151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	142	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCTGCACCGCCATTTCC	NA	False	NA	NA	False	NA	NA	NA	88031138	87980039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_87980229_87985632_87985792_87987233_87987505_87989956_87990108_87992866_87993010_87993720_87993865_87996381_87996568_88003920_88004035_88014612_88014733_88015878_88016028_88020053_88020157_88024880_88025126_88026022_88026229_88026710_88026962_88028308_88028485_88030756
34912	chr12	+	1371	8	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-29	-1689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1560.62019330621	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908829	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78927954_78930089_78930176_78931564
34913	chr2	+	3543	2	FSM	ENSMUSG00000027243.9	ENSMUST00000140183.2	859	2	7	-2691	7	-14	multi-exon	FALSE	canonical	3	27	junction_1	0	29	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGCTCTGCAAGTCC	3380	False	NA	NA	False	NA	NA	NA	91541204	91545761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91541411_91542424
34914	chr12	-	1771	12	NNC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	-16	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	311.177077487592	20	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTATATGGTCAGAGC	NA	False	NA	NA	False	NA	NA	NA	36206801	36141837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36142309_36142965_36143089_36154333_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
34915	chr7	+	2091	12	NIC	ENSMUSG00000030523.19	novel	2575	11	NA	NA	42	-674	combination_of_known_junctions	FALSE	canonical	3	5	junction_4	367.525880350313	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCATGTCTGCCAAGC	NA	False	NA	NA	False	NA	NA	NA	63835248	63867809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851584_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237
34916	chr4	+	2821	12	NNC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	171.816498308251	2	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGCACCTTAATTTTAT	-11	True	NA	NA	False	NA	NA	NA	21848047	21875256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873582_21874630_21874912
34917	chr5	+	1215	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-44	-169	-44	169	mono-exon	FALSE	NA	NA	NA	NA	NA	52	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGCACCCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96009528	96010743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010700
34920	chr17	+	1569	6	Intergenic	novelGene_47	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_5	76.7557163994969	4	26	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17399586	17426485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17399977_17400131_17422956_17423084_17423325_17423387_17424679_17425195_17425899
34922	chr11	-	2431	21	Antisense	novelGene_ENSMUSG00000098942.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.435889894354067	1	67	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCCGCCAGCGGCCAATG	NA	False	NA	NA	False	NA	NA	NA	46031014	45947017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_45947038_45951749_45951834_45955836_45955910_45984689_45984767_45990677_45990755_46003581_46003777_46004449_46004514_46009244_46009317_46012244_46012414_46013919_46014002_46015832_46015968_46018063_46018250_46019612_46019699_46022445_46022643_46025250_46025361_46027077_46027289_46028190_46028268_46028365_46028476_46029663_46029800_46030516_46030603_46030830
34923	chr7	-	4986	12	Antisense	novelGene_ENSMUSG00000035704.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	74	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCGGGACACTGCGCAT	NA	False	NA	NA	False	NA	NA	NA	97041361	97020829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_97020940_97022875_97022953_97027305_97027502_97029014_97029125_97029447_97029514_97031778_97031906_97032123_97032228_97032890_97036148_97037654_97037794_97039446_97039545_97040093_97040164_97040729
34924	chr7	+	1649	3	Antisense	novelGene_ENSMUSG00000040725.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	454	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCTGCGGTTGAAACCTA	NA	False	NA	NA	False	NA	NA	NA	25420605	25424252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_25421789_25422230_25422427_25423982
34925	chr9	-	2501	20	NIC	ENSMUSG00000032422.19	novel	3112	28	NA	NA	2	-2279	intron_retention	FALSE	canonical	3	141	junction_7	27.7666373474443	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAACCGAGTCGGCCAGAA	NA	False	NA	NA	False	NA	NA	NA	88320980	88265870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
34926	chr7	+	2400	6	NNC	ENSMUSG00000046027.18	novel	2483	6	NA	NA	-6	-11	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	71.3649774048868	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATAAATGGTATCTTGAG	NA	False	NA	NA	False	NA	NA	NA	83281201	83291525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289666
34927	chr11	-	1327	9	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	4598.47450078556	1	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTGGGCTTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	69563130	69557764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69559915_69561753_69561803_69563104
34928	chr12	-	1033	6	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_3	5539.86777459535	1425	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTGTAGTAACTTGT	NA	False	NA	NA	False	NA	NA	NA	28685880	28681082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28684044_28684130_28684352_28685414_28685663_28685854
34929	chr16	-	3611	21	NNC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	22	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	62.4556642747477	1	129	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTCATAGTTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	10994183	10954466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963105_10963150_10963505_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10970922_10971128_10973883_10974193_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
34930	chr14	-	3422	7	Antisense	novelGene_ENSMUSG00000021748.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	149	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGCTGCCGAATGACAAC	NA	False	NA	NA	False	NA	NA	NA	14303753	14296824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_14296882_14296955_14298350_14298443_14299619_14299963_14300070_14300340_14300428_14302918_14303062_14303293
34931	chr10	-	1227	7	Antisense	novelGene_ENSMUSG00002075374.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCATCTCTATGAACTCA	NA	False	NA	NA	False	NA	NA	NA	127926142	127921006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127921104_127921317_127921494_127921904_127922064_127922164_127922288_127924187_127924401_127924823_127925026_127925885
34934	chrX	-	2209	15	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	3	-14812	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	37.9492141834697	1	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGCCATGCAGGACTTGA	NA	False	NA	NA	False	NA	NA	NA	49724135	49666813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49666902_49669771_49669827_49670279_49670434_49673555_49673725_49680801_49680963_49687010_49687166_49692247_49692403_49694884_49695013_49697354_49697485_49697563_49697810_49701581_49701728_49709551_49709682_49715313_49715387_49719767_49719873_49723821
34936	chr17	+	1355	6	NNC	ENSMUSG00000025736.16	novel	622	4	NA	NA	797	1023	intron_retention	FALSE	non_canonical	0	0	junction_1	0	229	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTTGGGCTCCGCGCCC	NA	False	NA	NA	False	NA	NA	NA	26049609	26051840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26049991_26050081_26050193_26050282_26050605_26050768_26050936_26051019_26051219_26051665
34937	chr5	+	316	1	ISM	ENSMUSG00000079109.12	ENSMUST00000148011.8	5482	15	21473	2216	11858	310	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTAGCAGCTCTCAATC	NA	False	NA	NA	False	NA	NA	NA	143868254	143868570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_143868300_143868600
34938	chr16	-	4644	1	Antisense	novelGene_ENSMUSG00000022849.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAGGATCCTCCGCCTCT	NA	False	NA	NA	False	NA	NA	NA	35595422	35590778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_35590800_35595400
34939	chr2	+	1535	12	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	17	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	419.165858019144	8	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	3984	False	NA	NA	False	NA	NA	NA	127429158	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433865_127436440_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
34940	chr11	-	1986	14	NNC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	5	-28	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	286.61852263033	2	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCAAATCTCCGGAGTTG	4520	False	NA	NA	False	NA	NA	NA	6217741	6208946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212826_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
34941	chr13	-	1498	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.944400230224	8	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311616_34311747_34312212_34312280_34312515_34312854_34312966_34313228_34313338_34314159
34943	chr13	-	3059	6	Intergenic	novelGene_1325	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACGCGAGCCCGCAAGGT	NA	False	NA	NA	False	NA	NA	NA	22144960	22129431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_22129587_22129723_22129968_22131170_22131240_22133828_22133955_22134401_22134498_22142591
34944	chrX	-	2355	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	74.9288551449529	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	69520786	69503358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510810_69513723_69513901_69520583
34945	chr11	-	4923	4	NNC	ENSMUSG00000069793.13	novel	5769	5	NA	NA	3376	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.013223349966	1	181	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAATATCCAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	82878587	82869247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_82872801_82872991_82873704_82875382_82875518_82878064
34946	chr15	-	1959	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_10	121.107555503362	47	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8644	False	NA	NA	False	NA	NA	NA	76501070	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500772
34947	chr3	+	1747	9	FSM	ENSMUSG00000028069.17	ENSMUST00000166021.8	1768	9	14	7	-2	-4	multi-exon	FALSE	canonical	3	12	junction_2	81.6783898898601	742	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAAATGTCTTTGTTTTG	1733	False	NA	NA	False	NA	NA	NA	87950428	87963293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87950487_87950773_87950909_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
34948	chr18	-	1875	9	FSM	ENSMUSG00000024539.18	ENSMUST00000122412.2	2667	9	0	792	0	-792	multi-exon	FALSE	canonical	0	0	junction_6	140.12890271104	63	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACTCAGTTGTATACT	NA	False	NA	NA	False	NA	NA	NA	67857665	67805073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
34950	chr11	-	1716	1	NIC	ENSMUSG00000038909.17	novel	3414	15	NA	NA	3319	-1307	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGCCCTAAAGGTGATG	NA	False	NA	NA	False	NA	NA	NA	95197020	95195304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95195300_95197000
34951	chr4	+	3779	22	FSM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	40	-1	40	1	multi-exon	FALSE	canonical	3	104	junction_1	15.0256017344728	140	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAAAGAGTCATGCGCTT	NA	False	NA	NA	False	NA	NA	NA	152171354	152199848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
34952	chr6	-	2473	19	NNC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-32	38	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_18	221.487284700388	370	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATCACTTGTCCTAG	NA	False	NA	NA	False	NA	NA	NA	47572307	47507214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47572216
34953	chr10	-	742	4	Antisense	novelGene_ENSMUSG00000003072.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGGTGACGAAGCAGTG	2626	False	NA	NA	False	NA	NA	NA	79981647	79978332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79978437_79979661_79979818_79981050_79981141_79981255
34954	chr9	-	3037	11	Antisense	novelGene_ENSMUSG00002074902.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCGCGCACGCGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	122665389	122634605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_122634753_122637830_122637893_122640814_122640958_122643495_122643653_122647837_122648092_122653527_122653654_122655259_122655354_122655909_122656003_122660683_122660921_122662587_122662723_122663800
34955	chr2	+	2854	5	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	168.364745418986	3	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTCTGTCATTGATATCC	NA	False	NA	NA	False	NA	NA	NA	162859406	162888060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162859454_162864294_162864388_162880967_162882635_162884610_162884720_162887122
34956	chrX	-	3197	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	46	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	188.933809507457	1	117	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGAGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	149800272	149766138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766848_149768469_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782798_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
34957	chr17	-	2003	7	NNC	ENSMUSG00000024327.17	novel	2320	7	NA	NA	132	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	225.75164574274	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACATGCAGCCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	34250342	34247250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248681_34248819_34248891_34249053_34249229_34249341_34249396_34249539_34249709_34249797
34958	chr12	+	4312	11	FSM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-12	0	-12	0	multi-exon	FALSE	canonical	2	9	junction_2	24.633513756669	196	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTCTTTGTGTTTAGA	NA	False	NA	NA	False	NA	NA	NA	72583144	72626893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670_72614035_72616491_72616596_72620263_72621277_72622127_72622315_72626077
34959	chr8	-	1604	5	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3341.33329488395	2	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGACTGAGTTTGGGCT	NA	False	NA	NA	False	NA	NA	NA	46664064	46659837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848_46663969_46664028
34960	chr14	-	3633	14	NNC	ENSMUSG00000022185.20	novel	4383	19	NA	NA	-30	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	144.049958460752	34	25	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCATTTGAGTGCCT	2600	False	NA	NA	False	NA	NA	NA	54924418	54879626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54880264_54882759_54882814_54883057_54883201_54883907_54884025_54884154_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
34961	chr7	+	2422	12	ISM	ENSMUSG00000066232.5	ENSMUST00000207277.2	3784	21	0	6270	0	-3658	5prime_fragment	FALSE	canonical	0	0	junction_2	236.104088265891	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGTGGGCAAGTCTTAAT	7239	False	NA	NA	False	NA	NA	NA	109617521	109644918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824
34962	chr6	+	1764	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	-37	2	-25	-2	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	1444	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTATTTTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	137731518	137814890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
34963	chr17	-	2102	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	-6	154	-6	-6	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACATTGCTTCTTGTCAG	NA	False	NA	NA	False	NA	NA	NA	13179640	13161930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
34965	chr8	-	1849	6	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-23543	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1950.54402667563	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43783560	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877_43759932_43782483_43782564_43783481
34966	chr11	+	2597	17	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	18	-18	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	13.6358901432946	1	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGATTTATTTATTGTA	NA	False	NA	NA	False	NA	NA	NA	119246436	119271857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119246466_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
34967	chr16	-	4661	8	Antisense	novelGene_ENSMUSG00000022711.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	129	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGGAACTTCCGGGTCCG	NA	False	NA	NA	False	NA	NA	NA	8474914	8455589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_8455691_8460599_8464128_8466511_8466612_8466745_8466820_8468839_8468947_8469271_8469389_8473413_8473551_8474417
34968	chr4	+	2492	20	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	6	-6	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	123.771570491975	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTGTCTAACTTGCC	3982	False	NA	NA	False	NA	NA	NA	155709345	155734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155709399_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
34969	chr8	+	1571	7	Antisense	novelGene_ENSMUSG00000039067.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6519	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGACCGCCGCTGCACA	NA	False	NA	NA	False	NA	NA	NA	108307011	108315085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_108307952_108309013_108309108_108310806_108310883_108311491_108311593_108312336_108312430_108313256_108313349_108314910
34971	chr13	-	4192	6	Antisense	novelGene_ENSMUSG00000114617.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	82	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTTGACGGGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	36597046	36301868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_36301996_36388497_36389123_36416102_36416264_36430344_36430476_36525917_36526077_36594057
34972	chr2	+	2601	8	FSM	ENSMUSG00000068735.15	ENSMUST00000090554.11	2654	8	52	1	-34	-1	multi-exon	FALSE	canonical	3	171	junction_2	50.0424309757148	199	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAACAATCTGCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	93017980	93032093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_93018093_93027241_93027324_93027956_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
34973	chr17	-	2164	14	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-29	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	262.541019618361	1	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTTCCTGGATTCTATC	NA	False	NA	NA	False	NA	NA	NA	28841490	28808581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817878_28817977_28818444_28818844_28819216_28819290_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
34974	chr11	+	1562	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-31	multi-exon	FALSE	canonical	3	1960	junction_1	0	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
34975	chr16	+	3998	26	NIC	ENSMUSG00000022702.17	novel	4218	25	NA	NA	8	-10	combination_of_known_junctions	FALSE	canonical	2	15	junction_3	36.3301747862572	6	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATACCAAACCATTTGCCT	NA	False	NA	NA	False	NA	NA	NA	18696169	18789049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18696270_18713523_18713587_18714652_18714797_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
34976	chr7	+	1409	3	Genic_Genomic	ENSMUSG00000063902.14	novel	1378	1	NA	NA	-27	508	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTAAAAAAAAAAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	83405084	83406997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_83405642_83406086_83406475_83406533
34977	chr9	+	3485	3	FSM	ENSMUSG00000066415.5	ENSMUST00000189616.2	2612	3	1230	-2103	569	-912	multi-exon	FALSE	canonical	2	3	junction_1	1.5	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTTGTCTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	100957383	100981087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_100957474_100957932_100958010_100977769
34978	chr8	+	2236	13	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	563.804043972726	1	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAAGCTGTGTTTCTTG	8830	False	NA	NA	False	NA	NA	NA	120637555	120684292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675529_120677106_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
34979	chr11	+	3697	24	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	0	-91	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	52.7264582072897	1	150	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCCCAACCCTTATCCC	2847	False	NA	NA	False	NA	NA	NA	78192449	78213192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78192537_78192720_78192847_78194871_78195871_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212095_78212244_78212323_78212399_78212511_78212593_78212953
34980	chr17	+	3096	20	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	41	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	74.769007162948	1	87	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGGTGTATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	45817807	45831757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825715_45825796_45826297_45826438_45826870_45827005_45827378_45827524_45827746_45827924_45828288_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
34981	chr9	-	2094	10	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4321	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	89.7557728808131	185	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	27033525	27008679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27012854_27012933_27013159_27013313_27016802_27016917_27017644_27017711_27033348
34982	chr19	-	2291	10	NNC	ENSMUSG00000024826.16	novel	3314	11	NA	NA	-4	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	311.384046944216	2	74	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTGTCTCTTGACTCCT	1332	False	NA	NA	False	NA	NA	NA	5962839	5947402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5948660_5951240_5951327_5952131_5952245_5952390_5952520_5952658_5952806_5954519_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
34983	chr2	-	3148	2	Fusion	ENSMUSG00000080374.3_ENSMUSG00000046110.16	novel	1059	3	NA	NA	685	1282	intron_retention	FALSE	non_canonical	0	0	junction_1	0	153	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCGACGTTGCAGGCCCC	6754	False	NA	NA	False	NA	NA	NA	121283549	121279868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_121279923_121280455
34984	chr7	-	3092	15	NNC	ENSMUSG00000055809.8	novel	2224	12	NA	NA	7	1940	intron_retention	FALSE	canonical	0	0	junction_3	8.883601034881	72	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATGGGCTGGGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	4535445	4523991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_4524094_4524343_4524386_4524814_4524918_4525303_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4533867_4534736_4534880_4535185_4535275_4535376
34985	chr4	-	2196	13	FSM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	20	2	20	-2	multi-exon	FALSE	canonical	1	98	junction_7	73.9915066447194	1543	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149251144	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
34986	chr1	+	2934	7	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	0	-1	intron_retention	FALSE	canonical	3	46	junction_1	66.4665747241089	7	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	NA	False	NA	NA	NA	171097912	171104466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171097985_171098152_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
34987	chr17	-	1514	10	NNC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	754.675794997796	13	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906499	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900402_45904257_45904359_45906407
34988	chr11	+	1329	9	NNC	ENSMUSG00000020407.14	novel	518	6	NA	NA	-47	1	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	921.243512528039	177	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	NA	False	NA	NA	NA	9068739	9086168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068970_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
34989	chr1	+	1564	12	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-6	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	588.231991677653	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAATATTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	59724123	59750642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735177_59743228_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
34990	chrX	-	3157	14	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-117	-56486	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	191.672396792829	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	59224566	59157804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198255_59198351_59200962_59201078_59205586_59205656_59223941
34993	chr10	-	1485	8	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	993.223570614637	22	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATACATTTTAATG	NA	False	NA	NA	False	NA	NA	NA	93725584	93696791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698745_93698896_93701268_93701366_93704728_93704824_93705978_93706036_93715880_93716001_93722855_93722964_93725399
34994	chr14	+	3269	9	NNC	ENSMUSG00000021806.5	novel	3976	17	NA	NA	3	-23768	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	509.15880381272	1	112	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACACACAGGCAACCCAG	NA	False	NA	NA	False	NA	NA	NA	19801354	19832430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831743_19831847
34995	chrX	-	2573	5	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	9	1	intron_retention	FALSE	canonical	3	142	junction_4	69.9052930757035	87	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTACTTTTGCAACTGTT	NA	False	NA	NA	False	NA	NA	NA	100838020	100833952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100834130_100834212_100834891_100835166_100835250_100835786_100835944_100836542
34996	chr10	+	3484	8	NIC	ENSMUSG00000020260.10	novel	2290	9	NA	NA	-18	-8	intron_retention	FALSE	canonical	2	4	junction_6	47.3812156010875	2	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTTTCAAGAAAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	77095133	77105395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101867_77102746_77102928_77103017
34997	chr8	+	1830	13	ISM	ENSMUSG00000031864.17	ENSMUST00000110241.8	2322	16	24	8016	3	-117	5prime_fragment	FALSE	canonical	3	438	junction_4	79.3588894411542	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCACTTCCTGAGTTTGA	NA	False	NA	NA	False	NA	NA	NA	69246610	69267147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908
34999	chr1	+	4448	1	ISM	ENSMUSG00000027520.17	ENSMUST00000239483.2	12523	6	36864	0	19391	0	mono-exon	FALSE	NA	NA	NA	NA	NA	79	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGTGTTTGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	63349287	63353735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_63349300_63353700
35001	chr15	-	1846	16	FSM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	-39	4	-27	0	multi-exon	FALSE	canonical	3	447	junction_7	35.3844912669692	2184	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	NA	False	NA	NA	NA	102259233	102246690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
35004	chr4	-	2965	2	Antisense	novelGene_ENSMUSG00000028601.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	146	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTATGAGTGTCTATGT	NA	False	NA	NA	False	NA	NA	NA	108035298	108032296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108034906_108034942
35005	chr2	-	2407	4	NIC	ENSMUSG00000027566.16	novel	914	7	NA	NA	-18	-6	intron_retention	FALSE	canonical	3	3926	junction_1	324.667008897835	17	88	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAACTCTGTGATGAGAA	NA	False	NA	NA	False	NA	NA	NA	179684244	179678172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179678367_179678730_179680643_179681145_179681273_179684070
35006	chr4	+	3744	10	NIC	ENSMUSG00000045917.18	novel	3765	10	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	22.7888861801829	136	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	NA	False	NA	NA	NA	63477068	63504594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_63477195_63479118_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
35007	chr2	+	553	1	FSM	ENSMUSG00000062846.8	ENSMUST00000121302.2	477	1	-84	8	-84	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATAAGCAGCGGCCCTG	5914	False	NA	NA	False	NA	NA	NA	157743371	157743924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157743400_157743900
35008	chr10	+	2913	1	NIC	ENSMUSG00000020153.15	novel	983	9	NA	NA	-237	-802	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	15	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGGACATCTATGTGCC	NA	False	NA	NA	False	NA	NA	NA	80088911	80091824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80088900_80091800
35009	chr8	+	2874	5	Intergenic	novelGene_1628	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCCTTTCCAATTCAG	NA	False	NA	NA	False	NA	NA	NA	43591126	43633275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43591879_43592068_43593774_43593999_43594341_43595725_43595762_43633235
35010	chr17	-	3493	21	FSM	ENSMUSG00000024170.16	ENSMUST00000024987.6	3434	21	-62	3	0	-3	multi-exon	FALSE	canonical	3	21	junction_20	19.5787512369916	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACACACAGGCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	25334941	25318553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334413
35012	chr3	-	1854	8	NIC	ENSMUSG00000005625.16	novel	1332	10	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	1001	junction_1	359.718030163196	409	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCCTTTTGCTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	94949877	94940017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
35016	chr1	-	1816	11	NNC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	340.795187759452	5	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGACCTTTTTAAAATTTA	863	False	NA	NA	False	NA	NA	NA	175453130	175428946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175452319_175452578_175453016
35017	chr15	+	1060	8	Antisense	novelGene_ENSMUSG00002075255.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCTTTCTTGTTCACCT	NA	False	NA	NA	False	NA	NA	NA	79961992	79965964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79962092_79962179_79962308_79962531_79962633_79962910_79963010_79963890_79964051_79964565_79964754_79965096_79965232_79965814
35018	chr7	+	3036	13	Antisense	novelGene_ENSMUSG00000037032.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCAGGAGCGCGCAGGCC	NA	False	NA	105	True	NA	NA	NA	105207690	105230431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105208260_105208339_105208518_105208651_105208767_105214177_105214265_105214509_105214593_105214739_105215385_105215753_105215905_105216289_105216354_105216460_105216546_105216633_105216692_105216784_105216961_105222888_105223626_105230343
35019	chr6	+	4162	18	FSM	ENSMUSG00000056832.15	ENSMUST00000162554.8	4195	18	30	3	-26	-3	multi-exon	FALSE	canonical	3	24	junction_11	3.0576920984393	44	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGTGTTCATGTTTAT	3515	False	NA	NA	False	NA	NA	NA	38358433	38404579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_38358529_38359010_38359149_38362367_38362461_38364531_38364647_38366916_38366967_38368353_38368500_38371956_38372129_38375217_38375293_38377981_38378085_38380401_38380458_38381416_38381471_38382871_38382936_38386349_38386439_38387708_38387793_38388958_38389029_38398473_38398581_38400284_38400419_38402062
35020	chr7	-	899	8	ISM	ENSMUSG00000078671.12	ENSMUST00000169922.9	9085	39	73169	25149	10	26	internal_fragment	FALSE	canonical	2	10	junction_5	4.45384493374854	1	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGGAGAACAAAGAGAAAC	NA	False	NA	NA	False	NA	NA	NA	73118325	73101534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_73101588_73102846_73102976_73104076_73104200_73105238_73105390_73105521_73105661_73113383_73113524_73114095_73114138_73118203
35021	chr7	-	4264	7	ISM	ENSMUSG00000078671.12	ENSMUST00000199809.5	5289	15	16802	2	3807	-2	3prime_fragment	FALSE	canonical	3	20	junction_2	3.02305952453618	103	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCTGTACTTTTTTGAT	3688	False	NA	NA	False	NA	NA	NA	73101533	73076443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_73079749_73085482_73085727_73091333_73091548_73093982_73094083_73096882_73097062_73098904_73099040_73101446
35022	chr13	-	1543	2	NNC	ENSMUSG00000050377.9	novel	2727	13	NA	NA	-826	-47257	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	72	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTATACATAGCATATTT	NA	False	NA	NA	False	NA	NA	NA	112731720	112730109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_112731039_112731106
35023	SIRV7	-	2403	6	NNC	SIRV7A	novel	2462	5	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1670.53363929015	1	105	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147919	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2140_2196_2676_2993_3112_43028_43078_114680_114989_147608
35024	chr16	+	2780	4	Antisense	novelGene_ENSMUSG00000008393.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	78	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTGCTCTTCGACTGC	5716	False	NA	NA	False	NA	NA	NA	8476501	8489999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_8478968_8481450_8481573_8482117_8482285_8489974
35027	chr1	-	1193	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	8	-241	0	-4	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	604	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACAATGGTGCCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	44141593	44125779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
35028	chr8	-	2462	8	NIC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-15	493	intron_retention	FALSE	canonical	3	1341	junction_7	177.083515406069	70	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACAGATGGACCCACAGT	NA	False	NA	NA	False	NA	NA	NA	95564908	95548695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
35029	chr8	+	1292	1	Intergenic	novelGene_1611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCGGATTCATGGGAA	NA	False	NA	NA	False	NA	NA	NA	27763600	27764892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_27763600_27764900
35031	chr9	+	3130	11	NIC	ENSMUSG00000046603.17	novel	3049	11	NA	NA	10	14	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	9.76933979345585	68	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGCTGCTGAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	122634613	122665413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_122634754_122637831_122637902_122640745_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
35032	chr10	+	702	7	ISM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	204	310	-19	278	5prime_fragment	FALSE	canonical	3	3700	junction_1	234.869230755234	26	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTTTGTGGAGGTGA	558	False	NA	NA	False	NA	NA	NA	128745771	128748374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306
35033	chr1	+	2756	15	Antisense	novelGene_ENSMUSG00000026235.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTTATACTTAGACACTCC	NA	False	NA	NA	False	NA	NA	NA	77346014	77403234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77346308_77349545_77350485_77351408_77351564_77354050_77354156_77354197_77354241_77357496_77357643_77359503_77359716_77360159_77360220_77364433_77364622_77365110_77365222_77366667_77366716_77375122_77375255_77376283_77376433_77377833_77377962_77403187
35034	chr6	-	3353	11	FSM	ENSMUSG00000001521.13	ENSMUST00000001562.9	3374	11	19	2	-7	-2	multi-exon	FALSE	canonical	3	32	junction_5	4.7169905660283	81	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTCGCTTTCCCAGAATA	7510	False	NA	NA	False	NA	NA	NA	128332795	128298125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128300176_128300960_128301133_128301942_128302042_128302839_128302955_128303734_128303848_128304502_128304701_128304918_128305041_128310795_128310973_128311400_128311561_128314696_128314749_128332700
35035	chr1	+	3343	9	FSM	ENSMUSG00000043015.16	ENSMUST00000185483.7	2023	9	-42	-1278	2	-5	multi-exon	FALSE	canonical	3	20	junction_5	9.4794184948234	88	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCCCTGGGCTCCGAGT	NA	False	NA	NA	False	NA	NA	NA	52669863	52691073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682326_52682396_52684419_52684646_52687908_52688086_52688864
35037	chr14	+	2095	19	Antisense	novelGene_ENSMUSG00000022040.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	11	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGGAGGCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	66321831	66361942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_66322280_66322376_66322439_66322744_66322826_66323682_66323753_66324413_66324515_66325747_66325785_66326955_66327029_66330246_66330359_66332185_66332277_66333137_66333161_66336251_66336290_66339044_66339121_66339595_66339694_66341176_66341244_66344662_66344783_66345422_66345616_66347563_66347727_66354161_66354249_66361787
35038	chr10	+	2005	3	NNC	ENSMUSG00000009291.14	novel	2294	6	NA	NA	837	-6	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	334.5	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGACTTTGATTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	77429007	77434560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77429267_77429697_77429745_77432861
35039	chr17	-	3509	24	NNC	ENSMUSG00000024018.19	novel	7117	5	NA	NA	13702	26644	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	152	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCCAGGCTGGCCCTGC	NA	False	NA	NA	False	NA	NA	NA	29922235	29879686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29879746_29882145_29882286_29893122_29893271_29895128_29895268_29897969_29898050_29899560_29899632_29900887_29900985_29901093_29901154_29904812_29905023_29906008_29906127_29908867_29908965_29909281_29909418_29910219_29910397_29913219_29913279_29913758_29913815_29914397_29914475_29916062_29916189_29916921_29917047_29917616_29917703_29918192_29918261_29919205_29919253_29919941_29920057_29920457_29920568_29921127
35040	chr12	+	1345	9	NNC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	2845	-40	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	786.238980447421	3	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTGTAATGAGTACCATG	6879	False	NA	NA	False	NA	NA	NA	100079318	100089624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085421_100085522_100086245_100086398_100087251_100087407_100089316
35041	chr17	+	2414	16	NNC	ENSMUSG00000002372.10	novel	2373	16	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_13	106.749676033857	250	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	NA	NA	NA	56980367	57018764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017036_57017231_57017590_57017778_57017855
35042	chr16	-	1870	10	NNC	ENSMUSG00000022889.8	novel	2294	10	NA	NA	617	-713	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416.000830958334	7	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATACAATGTGTGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	84531501	84515176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_84515981_84516638_84516809_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294
35043	chr12	+	2697	4	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9688	-10	intron_retention	FALSE	canonical	3	63	junction_2	11.7756811551038	6	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTGAGCACATCTGCTC	666	False	NA	NA	False	NA	NA	NA	104343734	104360505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_104343932_104355322_104355972_104357714_104359052_104359991
35044	chr13	-	2357	5	NNC	ENSMUSG00000074863.6	novel	615	4	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	58.2339033553479	3	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCTGACCTGGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	62832758	62819606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62821434_62821533_62821755_62823062_62823124_62823332_62823469_62832646
35045	chr11	-	2135	13	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	-2	0	intron_retention	FALSE	canonical	3	2240	junction_1	248.639785745475	1	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5937	False	NA	NA	False	NA	NA	NA	100510439	100473643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
35046	chr16	-	2133	4	NNC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	20	-239	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	173.4768636511	5	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCCAGTTCACCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	10810965	10777377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10778916_10781120_10781323_10784180_10784514_10810905
35047	chr19	-	2509	9	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	64	-21	intron_retention	FALSE	canonical	0	0	junction_5	620.754266497621	1	84	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGTCCACTCTCCAAC	6635	False	NA	NA	False	NA	NA	NA	4062597	4057523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059347_4059534_4059825_4061273_4061345_4061425_4062550
35048	chr2	-	1997	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	11	0	11	0	multi-exon	FALSE	canonical	3	110	junction_9	47.7596864973064	704	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5671	False	NA	NA	False	NA	NA	NA	165129778	165118473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
35049	chr11	-	3910	5	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	13	-866	intron_retention	FALSE	canonical	3	52	junction_3	62.0604543973052	2	153	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGCTATTGTGGACGCCT	4416	False	NA	NA	False	NA	NA	NA	94544777	94536687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94538575_94538769_94538889_94538968_94539056_94540288_94541850_94544521
35051	chr2	-	5066	6	NNC	ENSMUSG00000040093.17	novel	4642	5	NA	NA	-38051	-6	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	1.01980390271856	39	59	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGATCTGTTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	118418219	118359243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_118363141_118375562_118375727_118377196_118377494_118379521_118379652_118417483_118418029_118418186
35052	chr3	+	2702	4	FSM	ENSMUSG00000048039.9	ENSMUST00000055984.7	2893	4	192	-1	192	1	multi-exon	FALSE	canonical	3	350	junction_2	9.0921211313239	263	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTATGTGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	87837812	87847994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87837919_87838637_87839583_87845880_87846082_87846544
35053	chr8	+	2885	5	Antisense	novelGene_ENSMUSG00000039720.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACACTGGCATCATCAG	NA	False	NA	NA	False	NA	NA	NA	27687543	27713816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_27688098_27688419_27690371_27690747_27690934_27692401_27692490_27713710
35054	chr15	+	1323	12	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	5925.80379455566	1869	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTCTTGTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	103148858	103155120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151403_103152066_103152208_103152385_103152456_103154772_103154849_103154971
35055	chr14	+	3312	11	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	-3	-3	intron_retention	FALSE	canonical	0	0	junction_3	98.9850493761558	1	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATGTCGTTTTCCTTGTT	NA	False	NA	NA	False	NA	NA	NA	99283886	99311972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290958_99291000_99294174_99294257_99297675_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
35056	chr2	+	3271	8	NNC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-12	-3	intron_retention	FALSE	canonical	3	14	junction_3	86.6185633118218	1	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACATGCCATCTAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	25390858	25395480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25392164_25392412_25392571_25392882_25393058_25393202_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
35057	chr11	-	2981	7	FSM	ENSMUSG00000001034.18	ENSMUST00000108714.2	3069	7	59	29	29	-29	multi-exon	FALSE	canonical	3	31	junction_5	75.7840499196382	53	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAATACAAGGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	61385063	61379666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384422_61384781_61384905
35058	chr9	+	1634	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	172	3983	-3	1446	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	32	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGTTGCTTCAATACTT	8537	False	NA	NA	False	NA	NA	NA	18203592	18224755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
35059	chr3	-	2353	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	9	-1188	2	1183	multi-exon	FALSE	canonical	3	4849	junction_2	211	343	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCAATTGAATTTCAATAG	NA	False	NA	NA	False	NA	NA	NA	14676312	14670160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_14672354_14674600_14674718_14676269
35060	chr11	+	3594	7	NIC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	42	-18	intron_retention	FALSE	canonical	3	82	junction_1	30.5963868600344	18	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTTATACAAGTGTATG	7715	False	NA	NA	False	NA	NA	NA	58197936	58205421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58198083_58198337_58200267_58200353_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
35061	chr13	+	1522	4	NNC	ENSMUSG00000113081.2	novel	452	3	NA	NA	10	277	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	193.294823750893	344	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGATGGCCCGTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	62411389	62423344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62411510_62420579_62420707_62420906_62420968_62422130
35062	chr3	-	3002	10	NNC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	-59	-2700	intron_retention	FALSE	non_canonical	0	0	junction_1	325.819650181576	2	92	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTCCTACAAGTAAAGT	NA	False	NA	NA	False	NA	NA	NA	127346905	127333062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_127334284_127334447_127334608_127336680_127336803_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340468_127340569_127340840_127341010_127341196_127346831
35063	chr4	-	2910	6	NNC	ENSMUSG00000028568.17	novel	3141	6	NA	NA	-20	-174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	452.697956699608	1	123	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTTGTCTCATTTCTA	NA	False	NA	NA	False	NA	NA	NA	108690781	108671665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687775_108690725
35064	chr10	-	1731	10	NNC	ENSMUSG00000036112.16	novel	1984	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	966.409748744877	1	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	NA	False	NA	NA	NA	93725646	93696790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698364_93698810_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707401_93715930_93716001_93722855_93722961_93725399
35065	chr4	+	4286	12	Antisense	novelGene_ENSMUSG00000028438.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAACGCCACAAGCGCCAG	4654	False	NA	NA	False	NA	NA	NA	41392687	41464848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41392971_41393436_41395666_41397547_41397655_41400434_41400511_41403791_41403895_41404675_41404805_41409737_41409819_41413825_41414045_41414901_41415000_41423451_41423635_41428343_41428988_41464714
35066	chrX	-	2918	25	Antisense	novelGene_ENSMUSG00000080645.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	7	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCAAGCTTTGTGCGCAGC	NA	False	NA	NA	False	NA	NA	NA	7686802	7656248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_7656306_7658306_7658375_7658511_7658581_7660502_7660521_7661225_7661337_7665526_7665666_7666393_7666579_7666772_7666818_7667410_7667446_7667540_7667595_7667730_7667827_7669559_7669637_7670595_7670732_7676129_7676226_7676489_7676703_7676844_7676959_7678518_7678597_7678701_7678798_7678918_7678973_7679060_7679167_7680800_7680937_7684264_7684387_7684532_7684628_7685404_7685559_7686238
35068	chr2	+	1681	10	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-6829	-1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	341.446848890547	2	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTATCTCACTGACAAGA	6808	False	NA	NA	False	NA	NA	NA	23076256	23087655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082469_23082575_23083099_23083252_23084528_23084651_23084756_23084821_23085333_23085421_23086899
35070	chr12	+	2301	4	NNC	ENSMUSG00000037957.15	novel	2384	3	NA	NA	1	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	68.9025076144225	238	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAAAGAAGCAGTTTGTA	5373	False	NA	NA	False	NA	NA	NA	110704452	110761452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110704712_110745729_110745913_110759547_110760812_110760857
35072	chr5	-	2322	12	NIC	ENSMUSG00000029422.16	novel	1685	11	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	18	junction_11	203.720761731176	9	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATAACAAGTCCATTGT	4356	False	NA	NA	False	NA	NA	NA	123887442	123866499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123884834_123884934_123887351
35073	chr4	+	1540	11	FSM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	284	-229	-246	229	multi-exon	FALSE	canonical	2	236	junction_6	31.3438989278615	995	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGCTGGATCTCATGTTA	-9	True	NA	NA	False	NA	NA	NA	41755511	41758924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
35074	chr15	+	4261	2	ISM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	26	0	26	0	intron_retention	FALSE	canonical	3	498	junction_1	0	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8056	False	NA	NA	False	NA	NA	NA	101182178	101188826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101182427_101184813
35075	chr7	-	1656	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	6	-4	6	4	multi-exon	FALSE	canonical	3	224	junction_9	176.376561249007	1813	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCTTGTCGTTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	140748596	140740234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
35076	chr17	+	2663	8	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	3	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	52.4532833936591	14	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAACTGCATGGAAAGATT	NA	False	NA	NA	False	NA	NA	NA	21787272	21808956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21787508_21789310_21789390_21789482_21789599_21794118_21794219_21803291_21803405_21805041_21805169_21806966_21807249_21807345
35077	chr15	-	1851	7	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	-8	2	intron_retention	FALSE	canonical	0	0	junction_5	327.726723895925	9	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTCTCCTGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	83006960	83000046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004162_83006032_83006176_83006862
35079	chr8	+	1466	7	FSM	ENSMUSG00000091490.4	ENSMUST00000163869.2	1467	7	4	-3	4	3	multi-exon	FALSE	canonical	3	435	junction_2	46.4351399504968	47	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	43636159	43646921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
35080	chr12	-	1273	9	ISM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	17847	1	3553	-1	3prime_fragment	FALSE	canonical	3	369	junction_1	15.9408084801242	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTACACATTGTAGTT	NA	False	NA	NA	False	NA	NA	NA	69257122	69248547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595
35081	chr3	+	1926	7	Antisense	novelGene_ENSMUSG00000065738.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTCCAAGAAAAAAGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	153612943	153617670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_153613381_153613692_153613838_153614419_153614539_153614987_153615792_153615889_153616004_153616327_153616525_153617560
35082	chr14	-	1949	9	NIC	ENSMUSG00000040701.17	novel	3031	20	NA	NA	-449	713	intron_retention	FALSE	canonical	3	9	junction_8	42.6987997489391	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGGAAGGTAACTGTGA	NA	False	NA	NA	False	NA	NA	NA	55342797	55339093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342287
35083	chr11	-	911	8	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	2299	223	2165	0	3prime_fragment	FALSE	canonical	3	16996	junction_6	1784.68258196446	5	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33110907	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827
35084	chr12	+	2250	9	NNC	ENSMUSG00000060073.10	novel	1027	10	NA	NA	2	0	intron_retention	FALSE	canonical	3	138	junction_2	1298.39138456014	4	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTGTTGGGTAATTGA	4790	False	NA	NA	False	NA	NA	NA	71021464	71041275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71021542_71025506_71025783_71030092_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
35085	chr11	+	1242	9	Antisense	novelGene_ENSMUSG00000004393.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	38	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAACTTGAGGGTAACCT	NA	False	NA	NA	False	NA	NA	NA	6208921	6215738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_6209259_6209546_6209621_6211615_6211722_6212456_6212549_6212663_6212737_6213938_6214043_6214130_6214237_6214674_6214793_6215506
35086	chr9	+	2570	20	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	8	-213	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	173.34692929134	1	95	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGTCTGTAGAGAACTGC	NA	False	NA	NA	False	NA	NA	NA	98445791	98469669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98468045_98468200_98469092_98469186_98469277_98469459_98469604
35087	chr5	-	4095	10	FSM	ENSMUSG00000016520.8	ENSMUST00000016664.8	4557	10	16	446	16	-446	multi-exon	FALSE	canonical	3	45	junction_1	11.6724853214835	51	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGTGCCTTCAGCTTA	4976	False	NA	NA	False	NA	NA	NA	147013380	146953910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_146955867_146956816_146956976_146961161_146961394_146964016_146964195_146964862_146965001_146965896_146966266_146969684_146969885_146970088_146970331_146978840_146979309_147013227
35088	chr2	-	2393	3	Antisense	novelGene_ENSMUSG00000027323.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGATCATGGTGACTTTT	NA	False	NA	NA	False	NA	NA	NA	118966205	118963109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_118964987_118965526_118965741_118965903
35089	chr16	-	2476	11	NNC	ENSMUSG00000044626.14	novel	3923	10	NA	NA	-8	479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	57.2891787338586	2	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCTGTTAGAGGAATTAA	NA	False	NA	NA	False	NA	NA	NA	21814209	21773657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802650_21802768_21802919_21803019_21814070
35091	chr13	-	2156	16	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	1	-3	intron_retention	FALSE	canonical	3	642	junction_8	46.3770057966948	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCAGTTCTTCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	55684322	55678231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
35092	chr5	+	1364	14	NIC	ENSMUSG00000029227.16	novel	2140	16	NA	NA	9	-361	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	220.749985759949	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAAAACCTTTTTCATGT	NA	False	NA	NA	False	NA	NA	NA	74696172	74745731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706
35093	chr1	+	1997	3	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574	10	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	NA	False	NA	NA	NA	180720675	180726668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720901_180722288_180722407_180725014
35094	chr8	+	1658	1	ISM	ENSMUSG00000052446.18	ENSMUST00000131237.8	2689	4	17638	0	15229	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	1938	False	NA	NA	False	NA	NA	NA	72722519	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_72722500_72724200
35095	chr3	+	2006	10	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	11	1655	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	36.7910348714681	30	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGCAACAGCCTCAAAATA	NA	False	NA	NA	False	NA	NA	NA	135053829	135100499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135053884_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
35096	chr15	-	2179	18	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	21	226	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	780.35171291396	1	67	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTACCCGGGTTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	11399730	11383864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394392_11399708
35097	chr4	-	2149	5	ISM	ENSMUSG00000028741.14	ENSMUST00000131052.8	835	6	-893	10	-875	0	intron_retention	FALSE	canonical	3	983	junction_4	86.9985632065266	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	7776	False	NA	NA	False	NA	NA	NA	139077807	139074755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316
35098	chr11	+	2450	4	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	0	1	intron_retention	FALSE	canonical	3	300	junction_3	33.0689515339624	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	NA	False	NA	NA	NA	70861305	70868628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70861414_70862589_70862761_70863840_70865867_70868483
35099	chr2	+	2204	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	-8	intron_retention	FALSE	non_canonical	0	0	junction_6	738.393560372787	1	93	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAGATAGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	130116365	130121219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118438_130118506_130118779_130118951_130119545_130119768_130119891_130120075_130120211_130120816
35100	chr7	+	3402	7	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	30	-250	intron_retention	FALSE	non_canonical	0	0	junction_3	305.554550503398	1	193	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGATGGAGTCTTCTTACT	3794	False	NA	NA	False	NA	NA	NA	103874743	103884109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103875188_103876015_103876112_103877352_103877569_103880967_103881097_103881319_103881347_103881573_103882780_103882825
35101	chr1	+	1159	2	Antisense	novelGene_ENSMUSG00000094410.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	108	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTAATGATTCTATAT	NA	False	NA	NA	False	NA	NA	NA	133572135	133573415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_133572961_133573081
35104	chr4	-	2787	7	NIC	ENSMUSG00000028617.11	novel	1755	8	NA	NA	59	-7	intron_retention	FALSE	canonical	3	195	junction_6	8.5	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGTTGAATTCTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	107110670	107090720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107098218_107100404_107100537_107104490_107104978_107110471
35105	chr3	-	1747	9	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	357	junction_8	223.937735486898	1650	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGTATATAGCTTTT	6157	False	NA	NA	False	NA	NA	NA	153618589	153612924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616526_153617561_153617670_153618570
35106	chr7	+	3094	2	FSM	ENSMUSG00000045252.12	ENSMUST00000053410.11	3145	2	52	-1	52	1	multi-exon	FALSE	canonical	3	92	junction_1	0	143	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTGTCAGGCCTAGC	5086	False	NA	NA	False	NA	NA	NA	24776760	24781906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24776908_24778959
35107	chr13	-	1647	13	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	27	-88	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	669.497754331974	2	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCTTTCTATCCCTGAA	NA	False	NA	NA	False	NA	NA	NA	97334838	97312926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314493_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
35108	chr1	+	1841	6	NIC	ENSMUSG00000026641.14	novel	2167	10	NA	NA	-1809	7	intron_retention	FALSE	canonical	3	187	junction_1	10.5754432531218	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCACAGTTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	171243088	171246318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171243399_171243702_171243805_171244377_171244574_171244809_171245100_171245208_171245433_171245599
35109	chr11	-	2880	8	NNC	ENSMUSG00000018678.14	novel	3055	7	NA	NA	36	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	165.921176269619	4	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCAAAGTCTGCGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	96868501	96844169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96844766_96844898_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854268_96868446
35110	chrX	+	370	3	ISM	ENSMUSG00000041718.17	ENSMUST00000144185.5	476	5	15	1783	15	-1783	5prime_fragment	FALSE	canonical	3	607	junction_1	91.5	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACCTTTTTCATACTCA	NA	False	NA	NA	False	NA	NA	NA	143101033	143105234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_143101118_143102998_143103058_143105007
35111	chrX	+	1382	1	NIC	ENSMUSG00000041718.17	novel	1802	4	NA	NA	5793	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	143106811	143108193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143106800_143108200
35112	chr18	+	2032	20	NNC	ENSMUSG00000008301.12	novel	1386	5	NA	NA	-35699	-7386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.446593756538872	114	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGGCCTGCGGAGGCGC	NA	False	NA	NA	False	NA	NA	NA	56659815	56705986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_56660080_56661348_56661424_56664560_56664638_56664783_56664880_56665051_56665168_56665557_56665667_56667261_56667351_56670278_56670371_56671772_56671814_56675295_56675395_56678036_56678114_56679974_56680016_56681513_56681612_56683366_56683490_56684229_56684313_56692293_56692359_56693846_56693899_56695099_56695279_56695556_56695749_56705922
35113	chr1	+	2362	5	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	10	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	540.598915555701	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGCAAGAGAAAGGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	180720682	180726656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014_180725329_180725417
35114	chr16	+	2370	2	Genic_Genomic	ENSMUSG00000092029.2	novel	661	1	NA	NA	-166	1807	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAAAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	61197452	61200086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_61198045_61198308
35115	chr11	-	1580	8	NNC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-914	0	intron_retention	TRUE	canonical	3	16	junction_4	83.3678839939737	4	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8049	False	NA	NA	False	NA	NA	NA	82796376	82791597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82793957_82794915_82794963_82795065_82795811_82796103_82796202_82796332
35116	chr10	-	2973	6	Genic_Genomic	ENSMUSG00000112654.2	novel	1018	4	NA	NA	-666	23074	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGCGTCCGCGCATGCG	NA	False	NA	NA	False	NA	NA	NA	21218622	21171912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_21172074_21175074_21175141_21180426_21180541_21183481_21184991_21212863_21212971_21217606
35117	chr10	-	2428	14	NNC	ENSMUSG00000020076.8	novel	2535	15	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	112.716904640413	1	68	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTATTCTGTGTTAAGA	8153	False	NA	NA	False	NA	NA	NA	62486950	62451800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62461904_62462062_62463299_62463462_62469755_62469906_62475639_62475780_62476225_62476412_62476523_62476642_62478554_62478734_62479085_62479152_62482692_62482981_62486803
35118	chr16	-	3120	5	NNC	ENSMUSG00000022828.11	novel	3084	5	NA	NA	105	-22	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	117.992584512757	1	127	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGCATTTGAAATAGACTA	NA	False	NA	NA	False	NA	NA	NA	37360033	37330173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37359838
35121	chr9	+	3134	3	NNC	ENSMUSG00000032305.16	novel	3017	5	NA	NA	1228	513	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16.5	93	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCACCCCAAGCACCCAAA	NA	False	NA	NA	False	NA	NA	NA	57446127	57450980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57446172_57446528_57446576_57447937
35122	chr6	-	2699	12	NNC	ENSMUSG00000030177.15	novel	1887	12	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_4	82.8898502395032	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGCTCTACAAAGTCTC	NA	False	NA	NA	False	NA	NA	NA	120334331	120301281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311529_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
35123	chr15	+	1759	11	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	33	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	385.492723666738	2	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTCGGCAAAGACTGGG	NA	False	NA	NA	False	NA	NA	NA	85220478	85347400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277677_85346517_85346669_85347121
35124	chr6	+	1468	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	263	44	263	-44	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	3	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATAAAGGATATGTTTA	NA	False	NA	NA	False	NA	NA	NA	145561745	145567161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
35125	chr1	+	2943	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	153.251760318818	1	104	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTGGGAAGTTTAAATG	9794	False	NA	NA	False	NA	NA	NA	175708387	175736298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714372_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720623_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
35126	chr15	+	1358	4	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	630.303630535845	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141038_80141091
35127	chr19	-	3419	19	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	446.845859578247	2	167	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCACAGTTCGTTTTC	NA	False	NA	NA	False	NA	NA	NA	40576835	40538702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551366_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557617_40558911_40559037_40562214_40562298_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
35128	chr7	+	2446	6	Antisense	novelGene_ENSMUSG00000030423.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTCGGATCGGGCGCCT	NA	False	NA	NA	False	NA	NA	NA	37962247	37970779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_37962734_37963751_37963854_37965323_37965631_37966794_37968091_37968332_37968379_37970570
35129	chr17	-	2067	8	NNC	ENSMUSG00000024327.17	novel	1550	8	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	268.612762776698	1	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34250664	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249674_34249797_34250237_34250521
35130	chr16	-	2152	17	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	10	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	296.064017306646	1	67	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAGTCCCCGTGGCAGA	NA	False	NA	NA	False	NA	NA	NA	3895681	3857849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3880175_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
35131	chr9	+	1586	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	-214	-313	-21	2	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	855	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCTGGCTCATTAGTG	NA	False	NA	NA	False	NA	NA	NA	44684235	44702190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
35132	chr9	-	2044	16	NNC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	20	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	134.478184930576	330	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACAGGACTGGGCATGG	NA	False	NA	NA	False	NA	NA	NA	66032059	65995419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66013748_66013834_66016798_66016911_66031888
35133	chr5	-	4796	12	NIC	ENSMUSG00000011831.17	novel	5849	18	NA	NA	1129	-6	combination_of_known_junctions	FALSE	canonical	3	73	junction_9	50.5205955874671	124	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATTTTATGTCCTTAG	9325	False	NA	NA	False	NA	NA	NA	107963546	107892666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_107896324_107912541_107912638_107936064_107936161_107938227_107938375_107943564_107943724_107945678_107945820_107946991_107947127_107957455_107957603_107958155_107958189_107960223_107960278_107961411_107961473_107963476
35134	chr15	+	1838	2	FSM	ENSMUSG00000077737.3_ENSMUSG00000041841.9	ENSMUST00000227674.2	584	2	-436	-818	0	1	multi-exon	FALSE	canonical	3	24054	junction_1	0	2	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGGTGATCTAAGGTA	2248	False	NA	NA	False	NA	NA	NA	5146126	5148160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_5146905_5147100
35135	chr7	-	3703	26	NIC	ENSMUSG00000062444.16	novel	3806	26	NA	NA	-44	-2	combination_of_known_junctions	FALSE	canonical	3	36	junction_25	13.1209755734854	101	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGGCTCACCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	81139602	81110148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81139285
35136	chr10	-	4039	28	FSM	ENSMUSG00000074657.6	ENSMUST00000217895.2	3996	28	-47	4	-32	-4	multi-exon	FALSE	canonical	3	28	junction_13	6.98675996544999	61	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGGGCTGCTGTCCATCG	NA	False	NA	NA	False	NA	NA	NA	127098996	127064922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
35137	chr5	-	3650	24	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	7	-282	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	142.24419217648	1	152	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATACCATTCCATGGCT	NA	False	NA	NA	False	NA	NA	NA	108777614	108717567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746810_108750709_108750744_108757304_108757339_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777388
35138	chr2	+	1264	8	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	24	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAATTTAAAAACACCAAG	NA	False	NA	NA	False	NA	NA	NA	154714354	154730282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726370_154729631_154729727_154730105
35139	chr15	-	1850	16	NNC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	-18	-4	intron_retention	FALSE	canonical	0	0	junction_11	130.112259222565	27	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCATTTACCAGGATGTAA	NA	False	NA	NA	False	NA	NA	NA	102259148	102246695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254205_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
35140	chr19	-	3396	19	FSM	ENSMUSG00000025007.14	ENSMUST00000025979.13	3527	19	126	5	32	-5	multi-exon	FALSE	canonical	3	945	junction_12	98.5252364738204	1	163	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTGCACAGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	40576781	40538705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
35141	chr16	-	3076	19	Antisense	novelGene_ENSMUSG00000077239.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	71	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCGTGGGCCCTGCTGA	NA	False	NA	NA	False	NA	NA	NA	20511623	20500529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20500671_20500789_20500988_20501406_20501554_20502165_20502403_20502559_20502663_20502769_20502932_20503178_20503255_20504256_20504362_20504606_20504714_20504909_20505125_20505256_20505389_20505519_20505684_20505902_20506024_20506128_20506212_20507287_20507386_20507478_20507614_20507718_20507803_20507941_20508083_20510996
35143	chr8	+	2593	8	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	56	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCAGGGGGACAGCAGCG	NA	False	NA	NA	False	NA	NA	NA	112720076	112728371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112721644_112723090_112723218_112724206_112724294_112724921_112725010_112725155_112725595_112726701_112726822_112728115_112728241_112728331
35144	chr19	+	2260	16	NNC	ENSMUSG00000025217.16	novel	361	4	NA	NA	-6	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	246.399639249375	4	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTTGCTTTGCCGTTA	NA	False	NA	NA	False	NA	NA	NA	45352519	45517736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_45352582_45411571_45411680_45425770_45425843_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
35145	chr10	-	3074	6	NIC	ENSMUSG00000034748.17	novel	1891	8	NA	NA	-12	-11	intron_retention	FALSE	canonical	3	197	junction_1	19.7727084639409	12	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCTTTTACATTTTGTT	9877	False	NA	NA	False	NA	NA	NA	81463412	81457631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81461733_81462323_81462452_81463305
35146	chr5	+	3637	7	NNC	ENSMUSG00000029438.10	novel	4718	6	NA	NA	69	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	14.9749791318719	1	97	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTTCTGATCATGAGTT	NA	False	NA	NA	False	NA	NA	NA	123482631	123512128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_123482785_123489929_123490012_123494003_123494164_123499253_123499422_123507395_123507518_123509080_123509277_123509372
35147	chr6	-	4824	16	NNC	ENSMUSG00000107702.2	novel	675	3	NA	NA	-88686	-3857	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4.98887651569859	423	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCCCCAGCACGCGCC	NA	False	NA	NA	False	NA	NA	NA	136584715	136495830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_136495959_136536758_136538436_136540755_136540836_136542014_136542159_136543643_136543786_136548471_136548543_136552244_136552315_136559373_136559463_136564040_136564681_136570072_136570142_136573429_136573510_136576645_136576802_136580280_136580466_136582379_136582493_136583471_136584399_136584462
35149	chr7	-	649	1	ISM	ENSMUSG00000110221.2	ENSMUST00000210663.2	1279	2	7070	348	7070	-348	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGAGCTCTGCTCCCAGA	9966	False	NA	NA	False	NA	NA	NA	4902445	4901796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4901800_4902400
35150	chr11	-	3175	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	21	9	14	-9	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	327	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCGTCCCAAGCTTCCT	8941	False	NA	NA	False	NA	NA	NA	116197539	116178835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
35151	chr1	+	3547	8	NNC	ENSMUSG00000085526.2	novel	2547	5	NA	NA	-23549	-94328	intron_retention	FALSE	non_canonical	0	0	junction_1	0	65	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGCAGGGCCCTCGTCA	NA	False	NA	NA	False	NA	NA	NA	130366763	130390484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_130368117_130376040_130377301_130380120_130380313_130384557_130384640_130385819_130385924_130387318_130387511_130389558_130389744_130390305
35152	chr2	+	2254	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	53.7935224311957	1	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5163	False	NA	NA	False	NA	NA	NA	164339490	164350221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339678_164339785_164339953_164341718_164341843_164342110_164342212_164342351_164342421_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349527_164349750
35153	chr3	+	2116	16	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	423.191503800453	2	84	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGCTATAGGAAATGTTA	4846	False	NA	NA	False	NA	NA	NA	34074243	34123479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100257_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103480_34108313_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
35155	chr15	+	1829	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	215	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	596.354078966515	13	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTACACCTCACGCCAG	NA	False	NA	NA	False	NA	NA	NA	100513444	100518628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248_100517374_100517450
35156	chr11	-	3208	4	NNC	ENSMUSG00000034520.15	novel	1890	3	NA	NA	21	1540	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	361.774638261016	408	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACCTTTTTAGCAGGTGG	NA	False	NA	NA	False	NA	NA	NA	102710505	102688864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102689037_102689237_102692022_102693666_102693743_102710329
35157	chr6	-	3104	6	Antisense	novelGene_ENSMUSG00000029767.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	172	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTCCATGATAACCTACCA	3851	False	NA	NA	False	NA	NA	NA	29376667	29356483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_29356692_29361290_29361495_29366044_29366204_29366911_29366973_29372467_29372668_29374395
35158	chr17	-	1408	10	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3177	7348	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGCGATGCCGCGGGG	NA	False	NA	NA	False	NA	NA	NA	13143392	13135351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140988_13141090_13142415_13142580_13143145
35159	chr2	+	2125	10	Antisense	novelGene_ENSMUSG00000026958.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATGGAAGTTCATGCTT	-20	True	NA	121	True	NA	NA	NA	25242312	25246323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_25242579_25242697_25242769_25243164_25243230_25243371_25243531_25244246_25244303_25244476_25244647_25244752_25244834_25244903_25245968_25246042_25246155_25246242
35160	chr11	-	1964	2	Antisense	novelGene_ENSMUSG00000078695.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCGGGAGCTCCCTCCGG	NA	False	NA	NA	False	NA	NA	NA	97578847	97576812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_97578699_97578769
35163	chr8	-	1105	4	ISM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	7466	223	7466	-223	3prime_fragment	FALSE	canonical	3	605	junction_1	24.7161665492222	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCCTTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	23720209	23716854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621
35164	chrX	-	1339	4	Antisense	novelGene_ENSMUSG00000031197.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAGGAGGGAAAAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	74578543	74564966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_74565046_74566873_74566964_74574689_74574830_74577513
35165	chr14	-	2761	12	NNC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	393.202259058777	2	99	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCAGTGGCTTG	6350	False	NA	NA	False	NA	NA	NA	66071437	66056486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66056680_66056827_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065915_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
35166	chr2	-	1120	5	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	9	-931	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5483.09283160517	13	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGGCTGTGGCAAGTT	3745	False	NA	NA	False	NA	NA	NA	154734742	154714268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154726213_154726367_154729623_154729728_154730102_154730281_154734609
35167	chr7	+	1626	7	FSM	ENSMUSG00000025510.15	ENSMUST00000058746.7	1619	7	-4	-3	-4	2	multi-exon	FALSE	canonical	3	37	junction_1	95.130465969402	138	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATCAGCTTGCTGACA	706	False	NA	NA	False	NA	NA	NA	141048730	141051388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_141048810_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
35168	chr7	+	1784	16	NNC	ENSMUSG00000063931.15	novel	1881	15	NA	NA	51	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	93.3829867921466	4	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTCTGCCCATCTTCC	NA	False	NA	NA	False	NA	NA	NA	34611854	34744131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_34611880_34620753_34620826_34620869_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
35169	chr16	-	2615	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	62	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	NA	False	NA	NA	NA	45563269	45550087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
35170	chr1	-	3281	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	86	14	-5	-14	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	3498	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATAGTACATGCTCCCGT	NA	False	NA	NA	False	NA	NA	NA	38036310	38024283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
35171	chr16	+	2819	7	NIC	ENSMUSG00000022721.20	novel	3520	11	NA	NA	10	1	intron_retention	FALSE	canonical	3	222	junction_1	27.5358352374178	2	90	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCTGTGGTGAACCAG	458	False	NA	NA	False	NA	NA	NA	18066935	18071363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069525_18069989_18070885_18070963
35172	chr1	-	2397	13	NIC	ENSMUSG00000026209.16	novel	2833	14	NA	NA	-2	-8	intron_retention	FALSE	canonical	3	252	junction_12	199.850499679691	10	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTCCAGCTCTCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	75293639	75285216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
35173	chr2	-	1143	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	1	47	junction_1	1428.61700368219	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9578	False	NA	NA	False	NA	NA	NA	10085247	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061529_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
35174	chrX	+	3540	19	FSM	ENSMUSG00000031351.16	ENSMUST00000164800.8	3557	19	-12	29	-12	-29	multi-exon	FALSE	canonical	3	40	junction_12	13.3427050397503	116	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGTATTATAACTTCTT	NA	False	NA	NA	False	NA	NA	NA	72030932	72075120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
35175	chr18	+	2341	4	NNC	ENSMUSG00000057561.11	novel	1905	4	NA	NA	4	-430	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	761.070007000378	1	102	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGTGTATCTAAATAAGC	NA	False	NA	NA	False	NA	NA	NA	46730780	46742848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731707_46731768_46740570_46741759_46741842
35176	chr6	+	3083	3	Antisense	novelGene_ENSMUSG00000080465.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCCATGAGCATCAATAC	NA	False	NA	NA	False	NA	NA	NA	71857663	71861542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_71858218_71858490_71858651_71859173
35177	chr14	-	1200	6	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAAGAGCTTTTGTCAA	NA	False	NA	NA	False	NA	NA	NA	63380618	63375480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63375570_63375801_63375942_63376445_63376569_63379190_63379314_63379685_63379753_63379960
35180	chr5	+	2516	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	11	-2	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	26.6327909832138	255	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCCTTTTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	37185689	37282641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_37185944_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
35181	chr11	-	1129	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTTCCAGTCCCAGGGGA	5957	False	NA	NA	False	NA	NA	NA	120655234	120654105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120654100_120655200
35182	chr10	-	2853	17	Antisense	novelGene_ENSMUSG00000005682.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	46	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAGTAGGGGGTAGAGA	NA	False	NA	NA	False	NA	NA	NA	128151323	128139298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128139340_128139962_128140362_128143932_128144104_128144204_128144324_128144470_128144549_128144903_128145172_128146037_128146390_128146580_128146668_128148744_128148867_128149011_128149125_128149478_128149610_128149707_128149907_128150047_128150185_128150315_128150422_128150591_128150692_128150789_128150862_128150965
35183	chr1	+	1820	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	32	-434	-11	433	multi-exon	FALSE	canonical	3	624	junction_3	42.3685024517034	2470	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAGGTTTAATGCAATCA	NA	False	NA	NA	False	NA	NA	NA	42890424	42945276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
35184	chr5	+	1609	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-15	-537	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	743.458117328893	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGAATGTTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	45650830	45669496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660894_45662083_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
35185	chr11	-	1814	8	NNC	ENSMUSG00000042032.14	novel	1949	7	NA	NA	118	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_7	249.505633652809	5	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	NA	False	NA	NA	NA	40583330	40570140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40578850_40578987_40583304
35186	chr9	-	2733	3	NNC	ENSMUSG00000031931.5	novel	1037	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_2	91	263	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGTGTTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	14695822	14691082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_14692908_14693910_14694259_14695262
35187	chr15	-	1865	12	Antisense	novelGene_ENSMUSG00000033047.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	79	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGGAAGAAGAACTCCGCG	NA	False	NA	NA	False	NA	NA	NA	78978588	78959428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_78959495_78960985_78961239_78962270_78962351_78963190_78963255_78965786_78965857_78966053_78966125_78968308_78968488_78969761_78969926_78970653_78970804_78973662_78974160_78977534_78977616_78978398
35189	chr2	+	3341	11	NIC	ENSMUSG00000027678.18	novel	5757	23	NA	NA	23	2526	intron_retention	FALSE	canonical	3	215	junction_8	21.4140141029187	7	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAATATAAGCCAGCCAA	NA	False	NA	NA	False	NA	NA	NA	165834579	165896844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690
35190	chr11	+	1869	9	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	9	0	intron_retention	FALSE	canonical	3	7	junction_5	175.320376382781	83	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9199	False	NA	NA	False	NA	NA	NA	70538121	70542247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540692_70540844_70540951_70541046_70541589_70541671_70541747
35191	chr12	-	3875	22	Antisense	novelGene_ENSMUSG00000066643.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCGCCGCCCAGTCGCAT	NA	False	NA	NA	False	NA	NA	NA	9072940	9024041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_9024178_9024931_9025050_9027360_9027434_9028596_9028689_9031029_9031160_9032759_9032895_9035628_9035795_9035966_9036111_9037275_9037402_9039902_9040089_9046066_9046129_9053995_9054140_9055760_9055833_9056719_9056772_9057999_9058110_9058476_9058688_9062658_9062746_9065972_9066112_9066440_9066640_9068084_9068232_9069876_9070010_9071727
35193	chr12	+	1866	14	FSM	ENSMUSG00000059669.9	ENSMUST00000221372.2	1840	14	-26	0	-7	0	multi-exon	FALSE	canonical	3	45	junction_3	59.0833329855924	82	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	NA	False	NA	NA	NA	24548602	24608538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
35194	chr17	-	1683	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	-6	2	-6	-2	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	574	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACGCGGCTTCAGACGTC	NA	False	NA	NA	False	NA	NA	NA	35984637	35978623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
35195	chr19	+	3900	4	FSM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	-9	9	-9	-2	multi-exon	FALSE	canonical	3	65	junction_1	42.0898509804389	78	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACACAATCTCCTGCCGC	NA	False	NA	NA	False	NA	NA	NA	46587513	46645819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46587733_46632791_46632895_46640912_46641075_46642403
35196	chr19	-	2716	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	1	4266	0	1960	mono-exon	FALSE	NA	NA	NA	NA	NA	2424	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAGAGAACTTAAATATT	4062	False	NA	-87	True	NA	NA	NA	5852699	5849983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5850000_5852700
35197	chr8	-	2935	5	FSM	ENSMUSG00000038697.16	ENSMUST00000165628.9	2973	5	37	1	37	-1	multi-exon	FALSE	canonical	3	200	junction_4	173.639713199487	234	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAAAATGTGTGGCATC	3742	False	NA	NA	False	NA	NA	NA	124748099	124723057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747927
35198	chr12	+	2969	9	NIC	ENSMUSG00000072946.13	novel	3168	10	NA	NA	3	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	84.3782406785067	19	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTATGACCACTTTTT	NA	False	NA	NA	False	NA	NA	NA	84332160	84362602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84360710
35200	chr7	+	2322	5	ISM	ENSMUSG00000066979.7	ENSMUST00000209131.2	4015	6	1605	720	1302	8	3prime_fragment	FALSE	canonical	3	1325	junction_3	66.8374894800815	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTTGGGTGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	131163740	131172901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
35201	chr1	-	1820	15	NNC	ENSMUSG00000026209.16	novel	2488	15	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	260.504504642003	1123	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGCTCTCTGTGCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	75294281	75285211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75285354_75285942_75286115_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
35202	chr9	-	3205	9	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	2411	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	150.527198539002	1	123	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCTGATTGCAATCTCTA	4725	False	NA	NA	False	NA	NA	NA	58154495	58125358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58126012_58126793_58126953_58127105_58128122_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257
35204	chr11	-	2140	16	ISM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	0	8351	0	-2753	5prime_fragment	FALSE	canonical	3	176	junction_2	32.5798847279865	40	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTTTTAAAGACACACT	NA	False	NA	NA	False	NA	NA	NA	98084119	98051331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
35205	chr13	+	4494	11	NNC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	43	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	40.9433755325572	51	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTCATAGGCTCCTTC	4680	False	NA	NA	False	NA	NA	NA	38041952	38116672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38042070_38042960_38043057_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533
35206	chr7	-	1325	6	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	3	-5	intron_retention	FALSE	canonical	3	11064	junction_5	2260.78420022788	289	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778156	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776699_44776919_44776993_44778123
35207	chr11	-	2433	13	NIC	ENSMUSG00000000384.16	novel	2347	13	NA	NA	-11	-3	combination_of_known_junctions	FALSE	canonical	3	46	junction_9	184.937433113652	91	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACATGGGCCACTGGCTT	NA	False	NA	NA	False	NA	NA	NA	6576078	6565601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575964
35208	chr2	-	2879	17	NNC	ENSMUSG00000027244.15	novel	3604	17	NA	NA	-86	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	84.4957238193153	1	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATAGCTTCCTATTCCA	NA	False	NA	NA	False	NA	NA	NA	91536165	91504969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91505620_91506194_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91535925
35210	chr15	-	3360	2	FSM	ENSMUSG00000046380.4	ENSMUST00000050234.4	5853	2	235	2258	235	-2258	multi-exon	FALSE	canonical	3	23	junction_1	0	78	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGTCATGATTCTTCA	NA	False	NA	NA	False	NA	NA	NA	74581149	74576407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_74579714_74581095
35211	chr4	-	2667	19	NIC	ENSMUSG00000040359.15	novel	4316	19	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	7	junction_18	50.3518790949758	5	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGGACTTGTTTGTTAT	11	True	NA	NA	False	NA	NA	NA	25281765	25250148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280720_25281675
35212	chr10	-	2315	17	NNC	ENSMUSG00000001120.16	novel	2013	16	NA	NA	-15	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_14	39.1016304007902	315	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGACTTCTCTCTGC	1122	False	NA	NA	False	NA	NA	NA	76797736	76597689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76692476_76692664_76728390_76728491_76797581
35214	chr14	-	2440	16	Genic_Genomic	ENSMUSG00000098609.2	novel	2479	2	NA	NA	-16530	14594	multi-exon	TRUE	non_canonical	0	0	junction_1	0	559	6	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAAACTCTCCGGGCGCGG	NA	False	NA	NA	False	NA	NA	NA	25887220	25842606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_25842716_25843126_25843207_25869285_25869348_25870489_25870605_25872934_25873321_25874365_25874455_25874632_25874727_25875092_25875201_25877076_25877178_25877532_25877606_25877767_25877827_25879502_25879599_25883336_25883435_25884349_25884409_25884564_25884687_25886431
35215	chr4	-	3826	14	FSM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	60	7	-1	1	multi-exon	FALSE	canonical	3	315	junction_5	49.639648211447	1	171	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACACTCCGGTTTCCTA	NA	False	NA	NA	False	NA	NA	NA	133914363	133857175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
35216	chr2	-	1821	7	Antisense	novelGene_ENSMUSG00000098904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTAAATATCCGCAGGTT	NA	False	NA	NA	False	NA	NA	NA	31507530	31501693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_31501750_31502494_31502569_31502846_31502919_31503040_31503118_31504720_31504795_31505509_31505636_31506188
35218	chr16	-	1520	12	NIC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	1	79	junction_10	496.448078065447	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCACTCTGAATTTCTCC	9193	False	NA	NA	False	NA	NA	NA	91525498	91486211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91514291_91514364_91525445
35219	chr7	+	5785	13	NNC	ENSMUSG00000030607.8	novel	2596	7	NA	NA	-10345	-225	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	4.27849921766448	19	18	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCACATTGTGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	78739153	78764150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_78739351_78740686_78741092_78742060_78742236_78742426_78742555_78743729_78744024_78746414_78746631_78747499_78750983_78757862_78757977_78761041_78761201_78761702_78761786_78762421_78762567_78763402_78763586_78763947
35220	chr12	-	2008	5	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	5	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.5714979643834	987	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008970	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_76985530_76986203_76986289_76986740_76986865_76999942_77000051_77008763
35222	chr2	-	2202	6	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	221.551258177425	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	NA	False	NA	NA	NA	75534825	75505856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75506551_75506663_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
35223	chr11	+	1753	9	NNC	ENSMUSG00000017801.16	novel	1826	8	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.93273649831	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGGATTGTTTTAAGTC	8249	False	NA	NA	False	NA	NA	NA	100978128	100983028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934_100982100_100982141
35224	chr10	-	1648	8	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	12	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	772.741581009077	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725658	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93722845_93722964_93725399
35225	chr12	+	805	6	ISM	ENSMUSG00000021012.17	ENSMUST00000021399.9	1430	7	3221	-1	3221	0	3prime_fragment	FALSE	canonical	3	422	junction_1	418.589727537597	5	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCTGTTTAATATCATT	NA	False	NA	NA	False	NA	NA	NA	98740501	98753107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_98740579_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
35226	chr18	+	2493	22	Antisense	novelGene_ENSMUSG00000024376.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAACTGAAAGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	33929952	34025066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_33930524_33931560_33931643_33931743_33931854_33934622_33934692_33935564_33935616_33943271_33943392_33957511_33957588_33958457_33958507_33961155_33961276_33961779_33961862_33965645_33965742_33987291_33987411_33992594_33992673_33994198_33994291_34007194_34007262_34007793_34007879_34009960_34010049_34011963_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34024879
35228	chr12	+	3131	9	NIC	ENSMUSG00000060073.10	novel	1027	10	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	3391	junction_6	444.85306562954	12	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAACATTGTTGGGTAAT	4780	False	NA	NA	False	NA	NA	NA	71021454	71041272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
35229	chr11	+	3654	23	ISM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	414	3	288	-3	3prime_fragment	FALSE	canonical	3	128	junction_9	26.4912273020134	1	135	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTCCAGTCCACTGAAT	3166	False	NA	NA	False	NA	NA	NA	78192768	78213280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
35230	chr7	+	2057	17	NNC	ENSMUSG00000051768.10	novel	2155	17	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	97.9412291887334	14	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACGGTTTCTCTCTTAGG	NA	False	NA	NA	False	NA	NA	NA	24246627	24272861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24246785_24247214_24247271_24259166_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
35231	chr16	-	2081	17	NIC	ENSMUSG00000022771.18	novel	2333	21	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_16	214.146115056403	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	NA	NA	NA	16929080	16904418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16929006
35232	chr3	-	4476	29	NIC	ENSMUSG00000033767.15	novel	5555	35	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_28	18.5486123580219	59	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTGTTTATTTTTG	8689	False	NA	NA	False	NA	NA	NA	83851056	83805515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83850846
35233	chr5	-	2561	7	NIC	ENSMUSG00000029328.16	novel	1477	8	NA	NA	-20	1	intron_retention	FALSE	canonical	3	110	junction_6	363.263181300953	1	100	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTCCTGCGTCAGGTA	NA	False	NA	NA	False	NA	NA	NA	100186774	100182584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
35234	chr11	-	1966	11	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	70	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1186.80325243909	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5271	False	NA	NA	False	NA	NA	NA	88846221	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88832093_88832183_88835137_88835357_88837994_88838061_88843231_88843381_88846119
35236	chr11	-	3023	9	ISM	ENSMUSG00000018537.17	ENSMUST00000179765.8	2485	11	4994	33	-1981	-33	3prime_fragment	FALSE	canonical	3	189	junction_6	17.8321163914999	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCTTTGTAATAAATGC	NA	False	NA	NA	False	NA	NA	NA	97585216	97579681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241
35237	chr7	+	2054	6	ISM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	450	2	6	0	3prime_fragment	FALSE	canonical	3	218	junction_1	214.949854617304	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGGTGTGCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	43896660	43901737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
35238	chr3	+	2013	8	ISM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	32978	400	-31765	-288	3prime_fragment	FALSE	canonical	3	101	junction_7	27.9226336398943	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATTGTTCTGGTGAA	NA	False	NA	NA	False	NA	NA	NA	57676460	57742252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
35239	chr11	-	3271	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9036	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	539.936716813429	1	191	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	388	False	NA	NA	False	NA	NA	NA	106615256	106545043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586590_106586856_106587877_106588181_106590417_106590725_106605844_106606011_106615168
35240	chr15	-	1295	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	129	319	2	-319	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	2	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCAAGCGTGCCTTTGT	160	False	NA	NA	False	NA	NA	NA	98832317	98829624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
35243	chr11	-	2330	5	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-12	7	intron_retention	FALSE	canonical	3	750	junction_4	116.140808934672	9	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGCTCCAGTCAACCTAT	NA	False	NA	NA	False	NA	NA	NA	120534542	120530234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120531175_120531967_120533121_120533717_120533789_120533984_120534114_120534505
35245	chr15	-	2209	5	NIC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	3	-11	intron_retention	FALSE	canonical	3	690	junction_3	113.109183977253	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACAAAACTCTCTCCC	NA	False	NA	NA	False	NA	NA	NA	57897718	57885676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57895476_57897479
35246	chr5	+	3221	14	FSM	ENSMUSG00000033540.19	ENSMUST00000112563.9	3373	14	150	2	-39	-2	multi-exon	FALSE	canonical	2	36	junction_11	7.1294040681437	100	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGGCCTCCCAAGTCT	NA	False	NA	NA	False	NA	NA	NA	108817121	108832421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828073_108828160_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
35247	chr11	+	2469	18	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	3053	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	47.1043897042703	1	49	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCTTCCAGTCCACTGA	720	False	NA	NA	False	NA	NA	NA	78195533	78213278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210363_78212087_78212244_78212323_78212399_78212511_78212593_78212953
35248	chr11	+	1013	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	88	346	74	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691274	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
35249	chr15	-	1290	12	NNC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	11811	23515	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAATGGAGAAAATCCAG	NA	False	NA	NA	False	NA	NA	NA	102407324	102382565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102382588_102382679_102382713_102383007_102383125_102387048_102387181_102391592_102391724_102392601_102392674_102395520_102395565_102396639_102396711_102397208_102397249_102398185_102398243_102399068_102399237_102406921
35251	chr5	-	1906	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	1685	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	NA	False	NA	NA	NA	33809918	33797398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
35252	chr8	+	2548	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	95.8693772797132	143	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	27532607	27546160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539341_27541289_27541430_27542263_27542363_27543313_27544055_27545085
35253	chrX	+	1795	4	Antisense	novelGene_ENSMUSG00000031422.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCAGGTTTCTCTGGCA	NA	False	NA	NA	False	NA	NA	NA	135633691	135642027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_135635253_135636296_135636370_135640551_135640642_135641956
35255	chr2	+	2051	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	75.1414093889559	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	NA	False	NA	NA	NA	180367121	180384073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
35256	chr9	-	2705	3	NIC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	45	9	intron_retention	FALSE	canonical	3	1351	junction_2	20	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATACATTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	50515067	50507647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50510206_50511847_50511965_50515037
35258	chr15	+	4151	32	NNC	ENSMUSG00000022191.17	novel	4570	35	NA	NA	-3457	-46	intron_retention	FALSE	non_canonical	0	0	junction_1	218.110044874917	1	206	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCGGTTGTTGTCTTAA	366	False	NA	NA	False	NA	NA	NA	12833978	12935330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12834749_12837370_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885077_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924147_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
35259	chr2	-	3783	6	NNC	ENSMUSG00000006471.19	novel	4517	12	NA	NA	-762	-89	intron_retention	FALSE	canonical	0	0	junction_4	70.2356035070533	1	97	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTCCAGGAGGACAGCCA	NA	False	NA	NA	False	NA	NA	NA	25139245	25134921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25137867_25137971_25138253_25138347_25138498_25138643_25138759_25138866_25139025_25139111
35261	chr2	+	1485	4	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	229	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	754.542392594493	2	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTACCCTTTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	143757468	143785237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780423_143781871_143781949_143784046
35262	chr7	-	1485	15	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-5	43	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	654.769880903799	338	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGGAAAGCCTTTATTG	-18	True	NA	NA	False	NA	NA	NA	45083706	45071277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074426_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
35263	chr15	+	2299	10	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-21	-1	intron_retention	FALSE	non_canonical	3	245	junction_2	19.9208309609022	446	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGATCCTGGCCCGCTGT	4805	False	NA	NA	False	NA	NA	NA	76215522	76219102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216832_76216909_76217012_76217102_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
35264	chr9	+	2043	16	NNC	ENSMUSG00000032872.17	novel	2644	16	NA	NA	-17	-120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	209.034436291142	2	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTCAGGAATTGATGGTG	NA	False	NA	NA	False	NA	NA	NA	86904122	86959314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939316_86940977_86941129_86941417_86941505_86948701_86948867_86958880
35266	chr11	+	1373	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-33	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGACAGTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654232_120654451
35267	chr9	-	1850	6	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1798.17489694412	1	80	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTCTGAACAAAATGTGA	NA	False	NA	NA	False	NA	NA	NA	110775162	110768685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771399_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
35269	chr3	+	1828	12	ISM	ENSMUSG00000105852.5	ENSMUST00000167642.8	2566	18	7	8573	7	-384	5prime_fragment	FALSE	canonical	2	3	junction_11	375.24876597217	2	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCTATTCTGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	105866825	105883343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478_105874676_105881728_105882360_105883286
35270	chr1	-	756	2	Antisense	novelGene_ENSMUSG00000026634.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACCTCAGACAACTGGAAA	NA	False	NA	NA	False	NA	NA	NA	190670182	190665175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_190665388_190669638
35271	chr14	+	2064	13	NNC	ENSMUSG00000015971.6	novel	2119	13	NA	NA	13	-5	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	91.3969896781192	4	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGACACTGATTTGAG	NA	False	NA	NA	False	NA	NA	NA	29700306	29715171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_29700546_29704592_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
35272	chr2	-	2717	9	FSM	ENSMUSG00000057147.14	ENSMUST00000055144.8	2476	9	-16	-225	2	1	multi-exon	FALSE	canonical	3	3	junction_1	69.7096657573396	35	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTTTGTGTGAATGTCA	NA	False	NA	NA	False	NA	NA	NA	114485384	114346899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_114348774_114350149_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
35273	chr15	+	1322	9	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	5	-388	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	4405.62342353497	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	103148863	103152994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152251_103152699
35274	chr4	+	2175	5	NNC	ENSMUSG00000015247.11	novel	848	5	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	251.03025216097	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATTCTGATTTTTTATC	2	True	NA	NA	False	NA	NA	NA	53011949	53022049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_53012048_53015014_53015226_53017048_53017668_53020716_53021198_53021283
35275	chr2	-	2322	5	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	-62	-3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	238.209335459381	4	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534895	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75507529_75507888_75507997_75508831_75508922_75509506_75509774_75534707
35276	chr4	+	2760	12	NIC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	0	1269	intron_retention	FALSE	canonical	2	10	junction_2	87.2281135967808	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCTTTGAAAGGATTATT	NA	False	NA	NA	False	NA	NA	NA	62327033	62342837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_62327139_62327811_62327990_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340760_62340839_62340959_62341454
35278	chr15	-	2967	7	NIC	ENSMUSG00000022620.15	novel	3492	9	NA	NA	-196	-14	intron_retention	FALSE	canonical	3	62	junction_4	10.6301458127346	123	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTCTACAAAGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	89360512	89356692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710
35282	chr7	+	2809	18	FSM	ENSMUSG00000025726.12	ENSMUST00000026820.11	2846	18	37	0	-14	0	multi-exon	FALSE	canonical	0	0	junction_4	56.988677318925	10	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	NA	False	NA	NA	False	NA	NA	NA	80764583	80820164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_80764626_80765270_80765383_80766232_80766322_80767348_80767441_80771794_80771979_80774615_80774758_80775908_80776023_80777459_80777538_80787909_80787991_80791711_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
35283	chr10	+	2757	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	165	0	78	0	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	1	142	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCATATTTTGATTATGA	NA	False	NA	NA	False	NA	NA	NA	41395574	41407044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
35286	chr11	-	1845	12	NNC	ENSMUSG00000018171.10	novel	2787	12	NA	NA	0	229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	209.286351345481	8	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGAAATTGTGTCCGTTT	9887	False	NA	NA	False	NA	NA	NA	86574647	86475526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498055_86502194_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
35287	chr11	+	1503	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-15	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654414_120654521
35288	chr7	-	1987	17	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-4	30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	651.470856864488	2	84	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTACTTTTATCTGTTA	NA	False	NA	NA	False	NA	NA	NA	33929692	33901553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902309_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920209_33926503_33926663_33928352_33928422_33928707_33928799_33929516
35289	chr12	-	1323	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	108	-14	-108	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTTAGCCTCGCTGTAG	NA	False	NA	NA	False	NA	NA	NA	111638731	111635902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
35290	chr8	+	2029	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	21	-6	0	5	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	1	44	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTGAATTGGGAAGC	NA	False	NA	NA	False	NA	NA	NA	85415913	85426421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
35292	chr14	-	1250	6	ISM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	12075	7	122	-7	3prime_fragment	FALSE	canonical	3	2964	junction_2	228.696654982096	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCAACTTGCTTTTTACT	NA	False	NA	NA	False	NA	NA	NA	63734466	63729802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393
35293	chr8	+	2276	9	FSM	ENSMUSG00000006585.4	ENSMUST00000212967.2	2696	9	9	411	9	15	multi-exon	FALSE	canonical	3	858	junction_2	70.7626976238187	503	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGTAAAATCTCTTTAAATG	2606	False	NA	NA	False	NA	NA	NA	123294773	123299882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
35294	chr10	-	4943	20	NIC	ENSMUSG00000020115.4	novel	3024	21	NA	NA	-10	-2	intron_retention	FALSE	canonical	3	107	junction_11	18.1066400945196	12	113	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAAAGGCTTGTGTGCTT	3914	False	NA	NA	False	NA	NA	NA	121422656	121382366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
35295	chr2	+	2776	3	NNC	ENSMUSG00000074884.13	novel	3105	2	NA	NA	0	8	intron_retention	FALSE	non_canonical	0	0	junction_2	2965.5	29	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTCTGGGTAGAAGTTG	NA	False	NA	NA	False	NA	NA	NA	121279848	121283494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121279923_121280455_121280818_121281154
35296	chr2	+	1940	11	Intergenic	novelGene_2653	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCGGAGAGAGCGCAAGCC	NA	False	NA	NA	False	NA	NA	NA	72923144	73044705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_72924068_72927487_72927612_72929635_72929733_72930417_72930561_72972242_72972340_72972651_72972673_72987171_72987256_73029742_73029873_73033668_73033812_73043202_73043305_73044629
35297	chr7	+	3149	11	Antisense	novelGene_ENSMUSG00000078762.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	106	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTCGCAGCTTCCCGCA	NA	False	NA	NA	False	NA	NA	NA	30353167	30364372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30353728_30356373_30356503_30356585_30357344_30357924_30358839_30358964_30359025_30359520_30359601_30359682_30359753_30361052_30361413_30362515_30362553_30362646_30362710_30364254
35299	chr13	+	464	1	NIC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	75	-6461	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTTTCTCTGTGTAGAC	NA	False	NA	NA	False	NA	NA	NA	97619283	97619747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_97619300_97619700
35300	chr2	+	2000	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	102	9	0	-9	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	109	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATCCAACTATGGGCCTT	NA	False	NA	NA	False	NA	NA	NA	83474880	83494957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
35304	chr11	+	1682	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-283	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	5071.22113104921	1	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAAAATGCCAAATATA	3038	False	NA	NA	False	NA	NA	NA	75623741	75656388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623887_75642736_75642907_75646399_75646507_75647642_75647850_75650117_75650249_75655466
35305	chr2	+	3323	10	NNC	ENSMUSG00000027282.18	novel	457	4	NA	NA	-2259	-1	intron_retention	FALSE	canonical	0	0	junction_1	815.409372305988	46	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGATTGGTGTCTGCCT	885	False	NA	NA	False	NA	NA	NA	90680275	90695734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90680882_90681403_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
35306	chr18	-	3360	8	FSM	ENSMUSG00000024259.10	ENSMUST00000060396.7	4371	8	15	996	15	-996	multi-exon	FALSE	canonical	3	132	junction_7	28.1852472628023	176	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAACTGCTTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	31742940	31714216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_31716823_31727629_31727688_31730091_31730149_31733184_31733286_31735775_31735854_31738805_31738864_31740274_31740318_31742581
35307	chr17	+	1467	5	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCGAGCGCAGGAGGGAAG	2575	False	NA	NA	False	NA	NA	NA	36145752	36149135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36145871_36146049_36146930_36147052_36147163_36147516_36147629_36148888
35308	chr13	-	1209	4	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-13	60602	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	97.6569961082609	2	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAGGCCAGAGGATAACC	NA	False	NA	NA	False	NA	NA	NA	66846320	66757389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66758312_66821007_66821069_66821267_66821395_66846221
35309	chr3	-	3793	1	NIC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	16450	-36	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	155	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTAAGGGTTGCAGCAT	NA	False	NA	NA	False	NA	NA	NA	108336009	108332216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108332200_108336000
35311	chr14	+	4551	9	FSM	ENSMUSG00000022139.18	ENSMUST00000088419.13	4552	9	2	-1	2	1	multi-exon	FALSE	canonical	3	31	junction_3	5.41842920042331	44	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTTGCGGTCTTCCTTC	6831	False	NA	NA	False	NA	NA	NA	120513082	120669110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_120513318_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120642049_120642145_120666346
35313	chr4	+	3353	24	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	45	0	intron_retention	FALSE	non_canonical	0	0	junction_14	72.0548520317907	1	132	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	3578	False	NA	NA	False	NA	NA	NA	108477181	108491320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485784_108485904_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487539_108487746_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
35317	chr15	+	1298	10	Antisense	novelGene_ENSMUSG00000105167.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	51	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGGAGCCAGTGCAGGC	NA	False	NA	NA	False	NA	NA	NA	79961996	79967556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79962092_79962179_79962308_79962531_79962633_79962910_79963010_79963890_79964046_79964556_79964751_79965101_79965232_79965814_79965987_79966591_79966784_79967524
35319	chrX	+	1899	1	Intergenic	novelGene_4008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAGTAACATCCTGT	NA	False	NA	NA	False	NA	NA	NA	107932051	107933950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_107932100_107934000
35321	chr4	+	3197	2	ISM	ENSMUSG00000042198.13	ENSMUST00000119403.2	695	3	-1940	6	0	-2	intron_retention	FALSE	canonical	3	436	junction_1	0	30	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAACATGTTTTGGGGT	-5	True	NA	NA	False	NA	NA	NA	3938913	3943519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_3941312_3942720
35322	chrX	-	892	2	Genic_Genomic	ENSMUSG00000081221.5	novel	999	1	NA	NA	11	165	multi-exon	FALSE	non_canonical	1	8	junction_1	0	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTTCGCTGCACCCAC	NA	False	NA	NA	False	NA	NA	NA	79238447	79237294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_79238104_79238364
35323	chrX	+	2908	4	NIC	ENSMUSG00000009995.18	novel	826	8	NA	NA	43	-6	intron_retention	FALSE	canonical	3	248	junction_1	7.78888096369861	5	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCATACCTCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	73326437	73333748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327624_73331624
35326	chr2	+	2229	3	Intergenic	novelGene_2816	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	2	53	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATTTATATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	172419531	172468690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172419745_172449327_172449895_172467241
35327	chrX	+	2578	12	NNC	ENSMUSG00000031256.12	novel	2717	11	NA	NA	-12	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	208.766665589018	133	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGCTTTTTAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	132960047	132976618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975397_132975457
35328	chr9	-	2761	3	NIC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	-5	15	intron_retention	FALSE	canonical	3	1351	junction_2	20	26	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGTACTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	50515117	50507641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50510206_50511847_50511965_50515037
35329	chr4	+	1687	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	47	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	159.91668749313	1	74	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216541	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216773_147233226_147233245_147316807_147316844_147413438_147413566_147596801_147596997_147597081_147597502_147668146_147668460_147669303
35330	chr1	-	1903	18	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	518.114915577562	2	51	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTTGCGTAGCTGCATT	NA	False	NA	NA	False	NA	NA	NA	78465493	78401722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438683_78438752_78438942_78439017_78439521_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
35334	chr3	-	1587	10	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-7	44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	854.406414411581	2	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTGGGTCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	108352532	108333883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336677_108340373_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
35335	chr6	-	3111	8	NIC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	5	-30	intron_retention	FALSE	canonical	3	112	junction_3	50.8434973668196	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAATAAAGTCTAATGTT	5286	False	NA	NA	False	NA	NA	NA	126916529	126900407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_126901304_126901880_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
35336	chr17	+	2430	4	FSM	ENSMUSG00000116802.2	ENSMUST00000231355.2	2194	4	14	-250	14	250	multi-exon	FALSE	canonical	3	89	junction_3	12.3917535302941	1	123	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATGGTATGCCTTGTT	6238	False	NA	NA	False	NA	NA	NA	17455147	17486575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473
35337	chr7	-	639	1	NIC	ENSMUSG00000002635.12	novel	1295	7	NA	NA	7503	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAAATATATATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	33884703	33884064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_33884100_33884700
35338	chr11	+	1422	7	NIC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	0	-79	combination_of_known_junctions	FALSE	canonical	3	40	junction_2	2365.51336335735	482	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACAGCCATCCTAAGTG	439	False	NA	NA	False	NA	NA	NA	52122863	52137606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_52122946_52127663_52127761_52128210_52128300_52133413_52133488_52134441_52134586_52135807_52135949_52136811
35339	chr12	+	3914	15	FSM	ENSMUSG00000021130.9	ENSMUST00000021558.8	3922	15	4	4	4	2	multi-exon	FALSE	canonical	2	15	junction_3	4.40141442942968	51	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGGCTGATGCCTTTATT	NA	False	NA	NA	False	NA	NA	NA	80565767	80650668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80566120_80619072_80619231_80622632_80622732_80623275_80623344_80624161_80624228_80626738_80626861_80627995_80628084_80630423_80630509_80630786_80630891_80635232_80635360_80637368_80637462_80639174_80639259_80643854_80643997_80644791_80644918_80648468
35340	chr7	-	3625	8	FSM	ENSMUSG00000074272.11	ENSMUST00000098666.9	3656	8	32	-1	2	1	multi-exon	FALSE	canonical	1	2	junction_5	11.2122382116278	28	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTTGTGGGGTTTTCT	2880	False	NA	NA	False	NA	NA	NA	25176996	25161130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
35341	chr15	+	2291	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-17	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	42	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	NA	False	NA	NA	NA	100125734	100159129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158221
35342	chr3	+	2259	8	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	-3	52	intron_retention	FALSE	canonical	0	0	junction_4	264.613156228067	1	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACACAGCAAGCCATTG	NA	False	NA	NA	False	NA	NA	NA	30847481	30874233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864105_30864593_30864687_30866444_30866506_30868382_30868503_30872648
35343	chr18	+	3871	5	NNC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-9	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1183.16080901964	494	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCCTTTCCTCCCCAAC	NA	False	NA	NA	False	NA	NA	NA	80250068	80269047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_80250162_80250368_80250559_80261918_80262023_80265393_80266876_80267045
35344	chr7	-	1514	10	NIC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	4	intron_retention	FALSE	canonical	3	2113	junction_5	108.771365149764	30	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTCTTCTTAGGTGT	NA	False	NA	NA	False	NA	NA	NA	27749481	27741136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748628_27749407
35345	chr19	-	2283	11	FSM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	4	-24	0	5	multi-exon	FALSE	canonical	3	26	junction_10	157.939355450122	896	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGTTTTTAGTTTGCTT	7445	False	NA	NA	False	NA	NA	NA	55304458	55286727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304111
35346	chr1	-	1968	14	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	26	26839	26	-17995	5prime_fragment	FALSE	canonical	3	480	junction_9	88.1404876440457	88	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTATGTGTATGAGT	NA	False	NA	NA	False	NA	NA	NA	180971743	180941541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
35347	chr19	-	1904	15	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-13	441	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	666.768451838678	1	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCTGGACTGAATTCAC	3900	False	NA	NA	False	NA	NA	NA	5345449	5333701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337569_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344334_5344405_5345068_5345116_5345289
35348	chr3	+	1655	16	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-15	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	392.791457250395	3	18	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	69629400	69656380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69629456_69629741_69629800_69631589_69631730_69633703_69633786_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643386_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
35350	chr6	-	1954	9	NIC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	118	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	1832.33191589297	1	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9387	False	NA	NA	False	NA	NA	NA	128415522	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128415368
35351	chr7	-	3684	7	FSM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	25	0	25	0	multi-exon	FALSE	canonical	3	19	junction_4	11.5854314646552	65	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGCCTCATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	12514556	12502018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12508039_12509586_12514498
35352	chr5	+	1553	2	Genic_Genomic	ENSMUSG00000070697.5	novel	1629	1	NA	NA	11	-4	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGTTTGTAATACC	NA	False	NA	NA	False	NA	NA	NA	88702331	88703945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_88702453_88702513
35353	chr6	+	3015	5	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	20	1273	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.1106840821269	362	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATGAAATACAGTCTAAAA	798	False	NA	NA	False	NA	NA	NA	52079948	52091937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52089331
35354	chr3	-	1774	9	NIC	ENSMUSG00000005625.16	novel	1332	10	NA	NA	-17	0	intron_retention	FALSE	canonical	3	1001	junction_2	349.501072959726	421	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTTTGCTTCAAATAGT	NA	False	NA	NA	False	NA	NA	NA	94949880	94940014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
35355	chr11	+	1574	5	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	16	-274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4732.78147604556	2	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAAATATATCATGCCTC	3051	False	NA	NA	False	NA	NA	NA	75623754	75656397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647857_75655507
35357	chr11	+	2291	3	NIC	ENSMUSG00000063316.14	novel	732	4	NA	NA	-2	0	intron_retention	FALSE	canonical	3	8302	junction_2	1665.5	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2379	False	NA	NA	False	NA	NA	NA	101333261	101336355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101333632_101334326_101336157_101336264
35358	chr13	+	2042	7	NNC	ENSMUSG00000021504.15	novel	2130	6	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	36.6787858759438	141	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACTGGCAAGGAACTGGA	NA	False	NA	NA	False	NA	NA	NA	55747904	55758256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031_55757651_55757712
35360	chr7	-	2760	12	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	689	junction_6	50.3703638434249	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7990	False	NA	NA	False	NA	NA	NA	126641578	126626903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
35361	chr8	+	4229	2	FSM	ENSMUSG00000046794.10	ENSMUST00000070481.8	4221	2	-13	5	-11	0	multi-exon	FALSE	canonical	2	5	junction_1	0	22	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGAAAACTATTCCTT	NA	False	NA	NA	False	NA	NA	NA	35842881	35855288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_35842960_35851137
35362	chr9	-	1564	2	NNC	ENSMUSG00000097195.11	novel	1781	2	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	0	32	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	NA	False	NA	NA	NA	88404941	88403109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88403731_88403998
35363	chrX	+	1226	9	ISM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	9968	863	-3068	25	3prime_fragment	FALSE	canonical	3	3075	junction_1	229.446582835744	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTTGCATTGTCTAGT	NA	False	NA	NA	False	NA	NA	NA	100483128	100491334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
35364	chr5	+	1329	8	NNC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2159.66895611341	13	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094_104588164_104588241
35365	chr7	+	3878	2	NIC	ENSMUSG00000043831.13	novel	3319	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	84	junction_1	0	3	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTCTCCCTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	66872361	66878211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_66873640_66875611
35366	chr8	+	2326	12	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	302.098254499924	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	3038	False	NA	NA	False	NA	NA	NA	13389685	13428448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141_13427932_13428039
35367	chr6	-	1291	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	11	-79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTTTGTTTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	87828030	87820142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820692_87820971_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
35368	chr9	+	3029	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	115	13	-7	-13	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	207	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTGCTAGCACCCGTGG	NA	False	NA	NA	False	NA	NA	NA	122180787	122210576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
35370	chr19	-	4584	3	FSM	ENSMUSG00000038843.19	ENSMUST00000174236.8	4606	3	21	1	21	-1	multi-exon	FALSE	canonical	3	31	junction_2	7	77	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTATGTCTGCACACATT	8055	False	NA	NA	False	NA	NA	NA	17334010	17303505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_17307853_17310473_17310621_17333920
35373	chr9	-	755	3	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2333	4	110	-4	3prime_fragment	FALSE	canonical	3	15409	junction_1	167.5	117	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	9433	False	NA	NA	False	NA	NA	NA	78386673	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559
35374	chr9	-	2935	22	NNC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	98.8315638069901	1	99	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGCAAACTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	61854011	61824569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61824962_61826181_61826253_61826893_61826923_61828309_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852626_61852702_61853893
35375	chr17	-	2509	8	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	47	-41	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	41.1884667828067	25	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGTCCTGTATATAACTG	NA	False	NA	NA	False	NA	NA	NA	22580334	22557010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22558273_22558440_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
35376	chr8	+	724	1	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAATGCCTATGACTCAC	NA	False	NA	NA	False	NA	NA	NA	43748798	43749522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43748800_43749500
35377	chr1	-	3431	4	NIC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	-1493	-207	intron_retention	FALSE	canonical	3	1166	junction_3	50.6644736367495	2	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTGTCTGCGTGGCAC	NA	False	NA	NA	False	NA	NA	NA	92392204	92367207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_92367630_92379732_92379842_92388101_92390880_92392082
35378	chr5	+	3851	22	NNC	ENSMUSG00000036817.15	novel	2608	22	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	253.019721744841	1	196	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCATGTGCGATTTCAAG	NA	False	NA	NA	False	NA	NA	NA	139186432	139235546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139186455_139200912_139201010_139209348_139209545_139211022_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
35379	chr9	-	1085	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	19	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGACTTGTCACTTGTAC	NA	False	NA	NA	False	NA	NA	NA	64085788	64080656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080715_64082104_64082281_64082506_64082588_64082871_64083007_64083375_64083497_64084220_64084259_64085015_64085086_64085177_64085300_64085504
35380	chr4	+	1943	21	NIC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	-2	1	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	203.729544985503	6	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTGTAGTAGTGTGT	3	True	NA	NA	False	NA	NA	NA	34614971	34660164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_34615027_34615468_34615562_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
35381	chr11	-	3038	17	NIC	ENSMUSG00000020792.16	novel	3205	18	NA	NA	0	-3	intron_retention	FALSE	canonical	3	153	junction_13	25.7305751976127	8	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTCCGAGCCGGGTGAG	8920	False	NA	NA	False	NA	NA	NA	116197560	116179937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
35382	chr19	-	4012	4	NIC	ENSMUSG00000024982.11	novel	2168	11	NA	NA	5	1972	intron_retention	FALSE	canonical	3	443	junction_2	15.9652400197707	4	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTCCGAGTCGTTTTATT	7466	False	NA	NA	False	NA	NA	NA	55304437	55296978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_55300217_55301620_55301713_55302732_55303205_55304227
35384	chr11	-	1684	9	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	372.905463053305	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGAGGTTCTCTGACTC	NA	False	NA	NA	False	NA	NA	NA	115977791	115969405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115969626_115969730_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
35385	chr10	+	2404	14	Antisense	novelGene_ENSMUSG00002076243.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAACAAAGAAGTAGGCTT	6013	False	NA	NA	False	NA	NA	NA	116321078	116386762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_116322191_116328195_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334138_116334236_116334368_116335248_116335376_116337102_116337223_116353221_116353289_116363731_116363850_116373121_116373189_116384940_116385011_116386676
35386	chr13	+	3264	10	NNC	ENSMUSG00000093930.3	novel	3245	10	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	212.170790742846	1	167	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120151953	120169618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164228_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
35387	chr1	+	1328	2	Genic_Genomic	ENSMUSG00000101188.2	novel	1218	1	NA	NA	-15	189	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACCGTGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	60743075	60744497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_60743910_60744003
35388	chr13	-	1613	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	-25	8421	4	-59	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	228	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACACACACACACACAT	NA	False	NA	NA	False	NA	NA	NA	100628871	100605146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
35389	chr5	+	3607	20	NNC	ENSMUSG00000029095.18	novel	660	8	NA	NA	28084	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	33.9145087804198	40	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAATGGTGACACACTG	NA	False	NA	NA	False	NA	NA	NA	35943478	36042294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35943629_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35989029_35989087_35990396_35990475_35994291_35994442_35998624_35998746_36000515_36000611_36006147_36006250_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030574_36032174_36032258_36040649
35390	chr9	+	1866	6	Antisense	novelGene_ENSMUSG00000032494.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACTTCGGAGGAATATA	1977	False	NA	NA	False	NA	NA	NA	110768673	110775162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_110769895_110771401_110771506_110771596_110771707_110772213_110772324_110773261_110773312_110774891
35391	chr9	+	2150	11	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	40	-29882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	116.305158956944	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACACTGAGTCTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	114230215	114273563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272920_114273258
35393	chr5	+	2895	8	Antisense	novelGene_ENSMUSG00000029575.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTAGGCACCCGTCCAGGC	1116	False	NA	NA	False	NA	NA	NA	114569118	114582081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_114571419_114573337_114573401_114574540_114574605_114574770_114574869_114575110_114575184_114575878_114575935_114576579_114576675_114581935
35394	chr4	+	2567	10	FSM	ENSMUSG00000066037.15	ENSMUST00000131671.8	2543	10	-27	3	-27	-3	multi-exon	FALSE	canonical	3	289	junction_1	97.5394823509124	139	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTATTTCAAATTCAAT	NA	False	NA	NA	False	NA	NA	NA	136038225	136067989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_136038401_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
35395	chrX	+	2552	11	Antisense	novelGene_ENSMUSG00000031232.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCGGGGCGAAACTTTC	NA	False	NA	NA	False	NA	NA	NA	105012335	105055386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_105012635_105013847_105015086_105017790_105017884_105023012_105023087_105027315_105027380_105027973_105028062_105032576_105032721_105032995_105033136_105035998_105036119_105040424_105040598_105055267
35397	chr5	+	3537	16	Antisense	novelGene_ENSMUSG00000105565.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCGGGAACCGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	23711154	23880972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_23712713_23718942_23719043_23719631_23719701_23723412_23723522_23723616_23723718_23729145_23729612_23730491_23730744_23731787_23731812_23732918_23733059_23745370_23745480_23750520_23750607_23751975_23752066_23753452_23753560_23770109_23770263_23880716_23880773_23880855
35398	chr14	-	2342	10	NNC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	303.54294751757	2	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTTGGTGATAAATTGA	NA	False	NA	NA	False	NA	NA	NA	40688747	40628403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40629946_40630022_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638771_40638907_40640586_40640613_40656144_40656243_40688732
35399	chr10	-	1941	11	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	671.022272357632	1	75	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATACATTTTAATG	NA	False	NA	NA	False	NA	NA	NA	93725643	93696791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697456_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
35400	chr8	-	3348	3	Intergenic	novelGene_1697	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCCATTTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	89779656	89772259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89774422_89775329_89776368_89779508
35401	chr2	+	1914	4	NIC	ENSMUSG00000027229.6	novel	448	5	NA	NA	-88	4	combination_of_known_splicesites	FALSE	canonical	3	63	junction_1	28.5228952870419	127	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTCAAAGTGATTATA	2059	False	NA	NA	False	NA	NA	NA	122016866	122036882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_122017027_122023712_122023787_122028866_122028956_122035291
35403	chr15	-	1567	8	Antisense	novelGene_ENSMUSG00000023051.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCCAGTGCATGCCGG	NA	False	NA	NA	False	NA	NA	NA	102432072	102427188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_102427279_102427555_102427724_102428904_102429011_102429553_102429647_102430156_102430230_102430413_102430533_102430857_102430987_102431283
35404	chr1	-	3337	22	NNC	ENSMUSG00000010453.13	novel	2907	22	NA	NA	9	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	50.43835059639	18	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTTCAGCTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	36408227	36374810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36375376_36376685_36376733_36382331_36382466_36382753_36382977_36383150_36383261_36383996_36384128_36384465_36384548_36384918_36385111_36387605_36387763_36387898_36388100_36388482_36388547_36390713_36390872_36391006_36391082_36392674_36392747_36392852_36392955_36393178_36393296_36393729_36393862_36397120_36397307_36397450_36397542_36404562_36404734_36406830_36407116_36408185
35405	chr1	-	3326	9	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	-13	-2	intron_retention	FALSE	canonical	3	42	junction_6	27.1888649082671	4	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGCTCTTTACTATTC	5176	False	NA	NA	False	NA	NA	NA	171108773	171104566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171106888_171107003_171107830_171107961_171108097_171108247_171108343_171108446
35406	chr11	-	2007	11	NNC	ENSMUSG00000069631.15	novel	2083	12	NA	NA	6137	4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	60.8345296686019	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAATGGCACCAGTGTTTC	5925	False	NA	NA	False	NA	NA	NA	106078225	106054151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061981_106062091_106064078_106064201_106064504_106064608_106075387_106075446_106077926_106078007_106078118
35407	chr5	-	2161	5	ISM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	9	4	9	-4	intron_retention	FALSE	canonical	3	492	junction_3	32.6448694284416	430	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATTCTTTGCCTATTTT	NA	False	NA	NA	False	NA	NA	NA	110928472	110921537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552
35408	chr3	+	2573	7	NIC	ENSMUSG00000028049.16	novel	1489	9	NA	NA	8	-68	intron_retention	FALSE	canonical	3	743	junction_2	142.23425513333	25	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCCTTCTGCTGTGCCAA	NA	False	NA	NA	False	NA	NA	NA	89084787	89090002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89088196_89088481_89088584_89089232_89089351_89089605
35409	chr7	-	2207	6	NNC	ENSMUSG00000042502.11	novel	3284	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	232.992360389778	13	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGTGGTAATTTAATAAA	5461	False	NA	NA	False	NA	NA	NA	126795169	126791196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126792671_126793544_126793814_126793915_126794074_126794194_126794331_126794532_126794634_126795100
35410	chr16	+	2011	5	NNC	ENSMUSG00000022744.13	novel	2147	5	NA	NA	6	-15	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	168.339500712103	27	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAGTGTCTAAATTGTT	NA	False	NA	NA	False	NA	NA	NA	58548293	58554599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_58548448_58549900_58550111_58551664_58551776_58552943_58553082_58553201
35412	chr19	+	2021	3	NIC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	-8	intron_retention	FALSE	canonical	3	444	junction_1	243.5	34	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATGCTATTTATTGTGA	NA	False	NA	NA	False	NA	NA	NA	8700850	8703797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8700871_8701504_8702086_8702377
35413	chr8	-	1996	11	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	1	0	intron_retention	FALSE	canonical	3	157	junction_3	26.4100359711985	25	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	NA	NA	NA	106578632	106571304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106576154_106576257_106576346_106576464_106576556_106578502
35416	chr14	+	1429	10	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	25	5565	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_9	267.103022617413	93	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTTGTGCAATATGTGTA	NA	False	NA	NA	False	NA	NA	NA	62569541	62616006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62615332
35417	chr6	-	1856	8	FSM	ENSMUSG00000029817.12	ENSMUST00000031841.9	1799	8	-53	-4	-50	0	multi-exon	FALSE	canonical	3	256	junction_7	100.796420409392	1081	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4540	False	NA	NA	False	NA	NA	NA	49241017	49220857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
35418	chr17	+	1981	4	NNC	ENSMUSG00000038880.14	novel	1884	6	NA	NA	23	-4	intron_retention	FALSE	canonical	2	6	junction_3	307.040713912667	698	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTGTGCGCTGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	25114131	25116472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25114463_25114635_25114679_25114761_25115534_25115637
35421	chrX	-	2476	21	Antisense	novelGene_ENSMUSG00000031060.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTCATCCTCCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	20517033	20503827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20503894_20505669_20505737_20507415_20507494_20508980_20509068_20510908_20510970_20511101_20511281_20511675_20511834_20512007_20512053_20512205_20512286_20513559_20513742_20513846_20513976_20514094_20514226_20514318_20514410_20514492_20514658_20515379_20515531_20515621_20515691_20515768_20515956_20516037_20516113_20516399_20516509_20516585_20516714_20516795
35422	chr7	+	884	1	Intergenic	novelGene_2893	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAAATGTTTCCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	23968265	23969149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_23968300_23969100
35425	chr7	-	1384	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	10043.1491503981	3	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGAGTCTGTTGTTCATG	NA	False	NA	NA	False	NA	NA	NA	126398353	126394411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395404_126395481_126395789_126395928_126396470_126396721_126396815_126396949_126398216
35426	chr4	+	3581	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	18	-11	18	11	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	541	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGGAATTTTTTAGTGC	NA	False	NA	NA	False	NA	NA	NA	116414872	116451090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
35428	chr19	-	2199	8	Intergenic	novelGene_1299	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACAACCGCAGCCATCTT	NA	False	NA	NA	False	NA	NA	NA	60824673	60800073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_60800110_60803027_60803245_60805966_60806047_60809642_60809793_60814266_60814367_60819221_60819331_60821019_60821115_60823261
35430	chr3	-	3824	4	NNC	ENSMUSG00000053870.8	novel	3518	4	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	13.29995822884	48	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAGAAATTTTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	154798843	154790556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_154793707_154795748_154795842_154797027_154797313_154798547
35431	chr2	+	2307	10	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-19	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	399.431818684713	1	81	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8644	False	NA	NA	False	NA	NA	NA	72306577	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063_72316457_72316497
35432	chr19	-	1725	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	-30	1031	4	450	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	2457	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGACTGTTTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	18609183	18557722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
35433	chr1	+	2106	9	NIC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	4	-8	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	342.71651459333	32	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTGTAGACCAAAGCTGG	NA	False	NA	NA	False	NA	NA	NA	15875873	15914268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
35435	chr6	-	1423	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	143	609	59	-142	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGAAAATGTAATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	87827945	87820205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
35436	chr1	+	2926	10	FSM	ENSMUSG00000026179.15	ENSMUST00000027370.13	2937	10	13	-2	3	0	multi-exon	FALSE	canonical	3	54	junction_2	408.826988068106	74	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTCTGAGCTCTCAAT	NA	False	NA	NA	False	NA	NA	NA	74324216	74392845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74324297_74325000_74325170_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
35437	chr11	-	1838	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	-16	5	-16	-5	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	5	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACCATTGTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	120238933	120236521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
35438	chr10	-	2587	9	NNC	ENSMUSG00000019795.18	novel	2607	9	NA	NA	13	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	365.308409942886	1	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCTGGATCCTTGGTAG	NA	False	NA	NA	False	NA	NA	NA	7539054	7505139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_7506741_7514635_7514760_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524428_7524814_7524920_7538838
35439	chr11	+	3516	3	FSM	ENSMUSG00000037750.17	ENSMUST00000100782.4	2473	3	8	-1051	8	426	multi-exon	FALSE	canonical	3	49	junction_2	46.5	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCAGCAATAAGGGTCC	2654	False	NA	NA	False	NA	NA	NA	77985541	78047952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_77985618_78033918_78034041_78044634
35440	chr6	-	3971	18	FSM	ENSMUSG00000008153.13	ENSMUST00000008297.5	4014	18	29	14	29	-14	multi-exon	FALSE	canonical	2	7	junction_17	12.5334155436701	87	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACTAGAAAAAAGTTCTT	8469	False	NA	NA	False	NA	NA	NA	124441724	124407731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448_124426598_124426732_124426891_124427664_124427719_124428264_124428428_124433835_124433949_124434814_124435097_124435502_124435689_124436116_124436267_124436724_124436934_124438490_124438687_124439068_124439192_124441379
35441	chr5	+	1299	6	NNC	ENSMUSG00000029304.15	novel	1507	6	NA	NA	204	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2419.33012216192	2	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGAGTCTGGTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	104584261	104588912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104584309_104584406_104584443_104585520_104585595_104586091_104586134_104587130_104587413_104588094
35442	chr2	+	1014	8	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	2271	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	637.608446158177	32	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	NA	False	NA	NA	NA	151338501	151353225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151338602_151342634_151342710_151344928_151345100_151346030_151346124_151347272_151347383_151348166_151348176_151351536_151351594_151352826
35443	chr11	+	3303	24	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	-31	-6	intron_retention	FALSE	non_canonical	0	0	junction_23	35.2851200584968	14	49	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGCCTGTGACCACTC	NA	False	NA	NA	False	NA	NA	NA	96941614	96959724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767_96959192_96959492
35444	chr5	-	2322	11	FSM	ENSMUSG00000025534.18	ENSMUST00000201801.4	2272	11	-39	-11	-2	-1	multi-exon	TRUE	canonical	3	14	junction_9	32.1249124512426	10	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTCTTTCGTTACTAT	NA	False	NA	NA	False	NA	NA	NA	130031708	130017852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029597_130029784_130031447
35445	chr11	+	1994	11	NNC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	56	1178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	276.920223169056	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAATTAAAAACCGAACACT	NA	False	NA	NA	False	NA	NA	NA	4110410	4130597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4110551_4111045_4111168_4116495_4116573_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
35449	chr9	-	2140	1	ISM	ENSMUSG00000032803.16	ENSMUST00000035484.11	3387	5	10596	11	9653	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGTGGAATGTGATGCT	NA	False	NA	NA	False	NA	NA	NA	103232443	103230303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_103230300_103232400
35450	chr4	+	1416	8	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-19	-804	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1010.79833068032	4	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGCTCTGACTTTGCC	1317	False	NA	NA	False	NA	NA	NA	40722460	40733096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722634_40723702_40723845_40723972_40724151_40727961_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
35451	chr2	+	1440	4	NIC	ENSMUSG00000032966.15	novel	1658	5	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	3	77	junction_2	964.4585124422	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCTCTGTGTCATGGAG	NA	False	NA	NA	False	NA	NA	NA	151384502	151403607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_151384665_151384737_151384786_151401377_151401541_151402540
35452	chr12	+	1992	1	Genic_Genomic	ENSMUSG00000020608.8	novel	NA	NA	NA	NA	-3689	1417	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCTTTGCATTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	11337080	11339072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_11337100_11339100
35453	chr2	-	1815	5	NIC	ENSMUSG00000027566.16	novel	1157	7	NA	NA	-4	-6	intron_retention	FALSE	canonical	3	4468	junction_3	540.680763020102	44	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAACTCTGTGATGAGAA	NA	False	NA	NA	False	NA	NA	NA	179684207	179678172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179678794_179679175_179679981_179680517_179680643_179681145_179681273_179684070
35456	chr16	-	1934	10	NIC	ENSMUSG00000022540.17	novel	1431	11	NA	NA	4	-1	intron_retention	FALSE	canonical	3	413	junction_6	42.8808282580778	169	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTCTGTCTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	4831413	4826594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4830160_4830290_4830374_4831166_4831239_4831326
35457	chr5	+	1048	8	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-24	-215	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	7682.48605595871	10	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCGGTCTGGATTTAT	NA	False	NA	NA	False	NA	NA	NA	115697571	115701571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341_115701428_115701476
35458	chr12	-	2142	5	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	12102	junction_4	2065.57623618689	14	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTGGTTGTAGTAACT	NA	False	NA	NA	False	NA	NA	NA	28685880	28681085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28681774_28683766_28683832_28684207_28685487_28685578_28685663_28685854
35459	chr5	-	3435	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	33	-1892	0	-48	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	2283	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATGCTTACTACTTTACC	8955	False	NA	NA	False	NA	NA	NA	123662206	123647875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
35460	chr17	-	3925	16	NNC	ENSMUSG00000041168.11	novel	2951	18	NA	NA	320	0	intron_retention	FALSE	canonical	0	0	junction_11	205.67767663669	5	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGCCTGAGTCTCAG	1903	False	NA	NA	False	NA	NA	NA	56933555	56921296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56921564_56921635_56921801_56921873_56922092_56922249_56922416_56922503_56922645_56922925_56923043_56923129_56923253_56923358_56923447_56924753_56924933_56925317_56927070_56927222_56927351_56927513_56927576_56928923_56929159_56929433_56929554_56930136_56930226_56933480
35462	chr5	+	1748	9	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	30	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1147.51061405767	2	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTTGTTTGTTCACTG	NA	False	NA	NA	False	NA	NA	NA	45650745	45670011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650908_45652515_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660840_45668474_45668560_45669222
35463	chr1	+	2160	14	NNC	ENSMUSG00000026353.10	novel	4113	13	NA	NA	123	572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	105.042454082925	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGATCTTATTTTTG	217	False	NA	NA	False	NA	NA	NA	128172021	128205329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693_128205146_128205189
35465	chr10	-	2508	7	NIC	ENSMUSG00000019822.13	novel	1602	10	NA	NA	-12	0	intron_retention	FALSE	canonical	3	6	junction_4	66.5392532436473	176	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTACCTTGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	41366348	41363167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364424_41364820_41364926_41365348_41365459
35466	chr9	+	2113	7	NIC	ENSMUSG00000032469.13	novel	2261	8	NA	NA	-7	-45	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	92.1188845399731	556	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTAATTATTCAATGTTA	6428	False	NA	NA	False	NA	NA	NA	99457873	99466509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99458179_99458628_99458754_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
35467	chr4	+	2152	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	9	128	intron_retention	FALSE	canonical	0	0	junction_11	247.10803755083	1	50	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCTATGTCTTTTATTC	9990	False	NA	NA	False	NA	NA	NA	155954032	155973318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972099_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852
35468	chr7	-	2086	14	NNC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-30	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	171.70171603668	1035	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTGTGCTTAACTGAGT	NA	False	NA	NA	False	NA	NA	NA	27252471	27231442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241563_27242159_27242330_27244612_27244711_27252422
35470	chr12	+	1585	13	NNC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	-2	-25	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_10	295.042887654584	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACATGGATTCCGGT	NA	False	NA	NA	False	NA	NA	NA	105976484	106041643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028978_106029068_106036783_106036875_106041265
35471	chr14	+	1954	1	Intergenic	novelGene_570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACACGTGGGCCTCGGCA	NA	False	NA	NA	False	NA	NA	NA	51040560	51042514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_51040600_51042500
35472	chr4	+	1593	9	FSM	ENSMUSG00000028937.15	ENSMUST00000167926.8	1505	9	-95	7	-95	1	multi-exon	FALSE	canonical	3	33	junction_1	152.008172066504	173	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGAAGCCTAGGTGGTC	NA	False	NA	NA	False	NA	NA	NA	152270495	152356305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152270843_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
35473	chr10	+	4213	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	112	2	112	-2	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	262	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTGTTACATATCATTT	NA	False	NA	NA	False	NA	NA	NA	58159399	58260511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
35474	chr7	+	1172	3	ISM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	8641	0	8576	0	3prime_fragment	FALSE	canonical	3	1694	junction_1	36.5	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115701176	115704445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_115701240_115702445_115702556_115703446
35475	chr4	-	1734	12	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	13453	793	-7826	-793	3prime_fragment	FALSE	canonical	3	810	junction_4	73.2204866783982	1	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTACCAACAATCAGTCC	NA	False	NA	NA	False	NA	NA	NA	122766251	122753632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124
35476	chr16	-	2881	8	NIC	ENSMUSG00000022540.17	novel	1431	11	NA	NA	8	0	intron_retention	FALSE	canonical	3	455	junction_3	33.560180486489	10	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	4831409	4826593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4830160_4830290_4830374_4831166_4831239_4831326
35478	chr14	-	2952	13	NIC	ENSMUSG00000071350.13	novel	2995	14	NA	NA	1	24	combination_of_known_splicesites	FALSE	canonical	3	13	junction_10	30.6467326516584	121	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTATGCTCCAAAGGACC	NA	False	NA	NA	False	NA	NA	NA	59678332	59639433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59668591_59668718_59674885_59675215_59678035
35479	chr7	-	1925	9	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	403.974144438725	4	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	NA	False	NA	NA	NA	78798758	78783515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795458_78798647
35480	chrX	+	3024	24	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12793	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	125.341906690376	1	95	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCTGTTCATTATTTAT	8026	False	NA	NA	False	NA	NA	NA	159932952	160039883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_160004661_160004746_160006152_160006237_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017620_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
35481	chr5	+	2817	20	Antisense	novelGene_ENSMUSG00000098624.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGGAAGAGAAGAGCGGG	424	False	NA	52	True	NA	NA	NA	137293972	137305810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_137294171_137294250_137294362_137294487_137294579_137294726_137294884_137295034_137295233_137295342_137295495_137295604_137295776_137296071_137296251_137296498_137296568_137296650_137296715_137296989_137297146_137297819_137297937_137298017_137298112_137298226_137298414_137298505_137298660_137300401_137300576_137300787_137300942_137301176_137301303_137305307_137305447_137305684
35482	chr15	-	3927	5	NNC	ENSMUSG00000115009.2	novel	2819	5	NA	NA	-115	1249	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_4	3.34477204006491	36	16	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTCATCAAGACGG	NA	False	NA	NA	False	NA	NA	NA	38455493	38435219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38438614_38445370_38445501_38453402_38453648_38455014_38455060_38455380
35483	chr14	+	1502	8	NNC	ENSMUSG00000022033.10	novel	1720	8	NA	NA	-109	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	287.571960825567	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTCAGCATTATCTGTT	NA	False	NA	NA	False	NA	NA	NA	66043176	66055268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_66043260_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
35484	chr15	-	2164	3	NIC	ENSMUSG00000062397.9	novel	4417	4	NA	NA	136	1621	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	3370.5	2	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAACTAGTCTAATTTCT	291	False	NA	NA	False	NA	NA	NA	37007510	36999250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_37001168_37002082_37002191_37007371
35485	chr11	-	2589	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	40	-1257	-2	1257	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	501	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCAGCAGCAGAAGCTT	NA	False	NA	NA	False	NA	NA	NA	115503755	115497486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
35487	chr4	+	1030	5	Intergenic	novelGene_2054	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	35.2526594741446	1	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACAGGAGAGAAACCTTA	2328	False	NA	NA	False	NA	NA	NA	146289386	146318586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289519_146291416_146291510_146312913_146312972_146316363_146316491_146317966
35488	chr11	-	2915	8	FSM	ENSMUSG00000001323.18	ENSMUST00000121738.8	3183	8	272	-4	-1	-2	multi-exon	FALSE	canonical	3	39	junction_7	16.4527771987291	138	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCATTTATTTGGGGGT	NA	False	NA	NA	False	NA	NA	NA	74816502	74797620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816444
35489	chr2	+	2279	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	51.0299476342623	653	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5135	False	NA	NA	False	NA	NA	NA	164339462	164350221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349588_164349847
35490	chr2	-	3137	8	FSM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	40	2	2	1	multi-exon	TRUE	canonical	3	73	junction_1	19.1790702249582	173	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTGCTAATCTTTCTT	3022	False	NA	NA	False	NA	NA	NA	164876747	164842278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
35491	chr3	+	1811	8	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	-11	-10	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	458.217175138424	7	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAATCAATTGTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	122068055	122078910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122068128_122068846_122069072_122069660_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
35492	chr2	+	1526	12	NNC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	571.102515004643	5	25	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACAGTCTTTCTCAGCC	NA	False	NA	NA	False	NA	NA	NA	90884401	90889776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887345_90888109_90888207_90888354_90888501_90889390_90889473_90889598
35493	chr19	-	2680	11	NNC	ENSMUSG00000013662.7	novel	3771	10	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	170.008352735976	1	109	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATTCTTTTTTCCCCAC	NA	False	NA	NA	False	NA	NA	NA	32689737	32650226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32682423_32682516_32684234_32684410_32689665
35494	chr15	-	2639	11	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-89	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1032.21034678015	2	131	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGACCTTCCCCCATT	NA	False	NA	NA	False	NA	NA	NA	81283884	81247870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248582_81248639_81249780_81250547_81250613_81259048_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
35495	chr13	+	2009	12	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	2	16	junction_6	174.354630538115	1193	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	99481256	99552070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99537777_99537901_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
35496	chr7	+	1800	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	337	2355	7	1097	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	2	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTGATAGGTATATTCT	NA	False	NA	NA	False	NA	NA	NA	83541544	83548385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
35497	chrX	+	3266	5	Genic_Genomic	ENSMUSG00000082598.2	novel	466	1	NA	NA	-31187	1758	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	13	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTTTATGTTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	162024720	162058131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_162024768_162025021_162025735_162028183_162028316_162028910_162029022_162055868
35498	chrX	+	2583	7	NIC	ENSMUSG00000009995.18	novel	1851	10	NA	NA	-16	0	intron_retention	FALSE	canonical	3	226	junction_5	12.5266382827424	207	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGTAGGA	NA	False	NA	NA	False	NA	NA	NA	73326339	73333757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332789_73332904
35499	chr7	+	3938	5	FSM	ENSMUSG00000074220.11	ENSMUST00000098596.11	2117	5	13	-1834	13	1834	multi-exon	FALSE	canonical	3	29	junction_4	7.82224392358101	47	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTGTATGAGGTTTACTG	5272	False	NA	NA	False	NA	NA	NA	29821379	29836209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832687
35500	chr2	-	1386	3	NIC	ENSMUSG00000027566.16	novel	914	7	NA	NA	9	-70	intron_retention	FALSE	canonical	3	4551	junction_1	75	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAACAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179684217	179679496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179679981_179680517_179681273_179684070
35501	chr10	-	2604	22	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	54	-953	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	456.848759564526	1	100	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGGGACAACATGACCA	NA	False	NA	NA	False	NA	NA	NA	77845507	77823733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824170_77824488_77824615_77824698_77824802_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826621_77827187_77827276_77827851_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
35502	chr5	-	1711	2	NNC	ENSMUSG00000066551.13	novel	1720	4	NA	NA	-305	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTATTGTTGTCCTTT	9052	False	NA	NA	False	NA	NA	NA	148987562	148985042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985728_148986536
35503	chr12	+	5138	18	NNC	ENSMUSG00000042700.17	novel	7488	21	NA	NA	306	-7128	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	38.3603385143335	1	256	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAATCCCAGAAGAATTTCA	NA	False	NA	NA	False	NA	NA	NA	82217105	82480606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_82217185_82281236_82281303_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462
35504	chr3	-	2684	9	Antisense	novelGene_ENSMUSG00000118506.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89973154	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960429_89960815_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966108_89968944_89969233_89970508_89971861_89972813
35505	chr1	+	2180	6	NIC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	1	0	intron_retention	FALSE	canonical	3	10	junction_1	77.1974092829546	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	NA	False	NA	NA	NA	165957986	165994079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_165958174_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
35506	chr14	-	1450	8	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1464.66970574897	3	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAACTTGCTTTTTACTT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735076_63737565_63737770_63746158
35507	chr4	+	1941	10	Intergenic	novelGene_1938	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCCGGAGCCGGCGTG	NA	False	NA	NA	False	NA	NA	NA	120614634	120682405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_120615494_120616528_120616591_120618826_120618929_120622404_120622568_120625920_120626099_120630870_120630967_120636318_120636433_120638670_120638741_120647573_120647687_120682221
35508	chr8	-	1727	7	Antisense	novelGene_ENSMUSG00000031770.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGAGACCACACAACGAC	NA	False	NA	NA	False	NA	NA	NA	95121979	95113160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_95113366_95115982_95116059_95116143_95116222_95117343_95117475_95118357_95118483_95118801_95119153_95121218
35509	chr14	+	2148	10	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	-46	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	743.228808462371	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	8968	False	NA	NA	False	NA	NA	NA	55777799	55786329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777953_55779862_55780097_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785303_55785507_55785593_55785761
35510	chr10	+	2924	15	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	18	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	36.5510545926754	119	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATTCATTGTATTCATTC	NA	False	NA	NA	False	NA	NA	NA	23672901	23703863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23680935_23681044_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
35512	chr4	-	2941	8	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	2274	20	519	-20	3prime_fragment	FALSE	canonical	3	1168	junction_5	184.331002187226	1	153	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAACATATGTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	141323261	141303392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
35513	chr10	-	2319	13	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	9349	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_12	17.736497211494	90	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	NA	False	NA	NA	NA	42344927	42188580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42344818
35514	chr4	-	3385	7	Antisense	novelGene_ENSMUSG00000028381.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	173	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGTCAGAAGAAGAGAGTA	NA	False	NA	NA	False	NA	NA	NA	59222833	59211875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_59211977_59213156_59213259_59213862_59213974_59217031_59217214_59218493_59218580_59219486_59219676_59220219
35515	chr16	+	3085	6	NIC	ENSMUSG00000022761.13	novel	2214	11	NA	NA	891	-826	intron_retention	FALSE	canonical	3	111	junction_4	9.76933979345585	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGCCCCCTCGCACACCC	271	False	NA	NA	False	NA	NA	NA	17336820	17341255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17341002_17341140
35516	chr14	-	2918	7	NIC	ENSMUSG00000040123.18	novel	5290	8	NA	NA	-30	397	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGATTTATTTTTGTT	8791	False	NA	NA	False	NA	NA	NA	57049203	57030387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
35518	chr13	-	1771	13	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-30	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	674.134645922707	3	59	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTATCCCTGAATCAA	NA	False	NA	NA	False	NA	NA	NA	97334833	97312922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325601_97327711_97327787_97330629_97330776_97334533
35520	chrX	-	4344	20	NIC	ENSMUSG00000031389.18	novel	3208	21	NA	NA	-6	-28	intron_retention	FALSE	canonical	3	19	junction_16	8.48136298041419	5	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACAGTCTTGGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	72954883	72937991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72954768
35521	chr17	-	905	4	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCGGCCCACGATTCCGA	3055	False	NA	NA	False	NA	NA	NA	29261075	29257537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29257597_29259746_29259786_29260178_29260265_29260354
35522	chr2	-	2588	10	NNC	ENSMUSG00000046085.8	novel	1037	5	NA	NA	-33034	-1978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGCCCGCTGCAGCCTT	NA	False	NA	NA	False	NA	NA	NA	103891740	103858204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103858312_103860688_103860775_103863936_103864108_103873249_103873363_103876001_103876207_103878274_103878321_103880611_103880699_103881476_103881599_103883706_103883828_103890210
35523	chr10	-	3450	18	Antisense	novelGene_ENSMUSG00000069601.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTCAGACCGAAACAT	NA	False	NA	NA	False	NA	NA	NA	69841394	69761759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_69762022_69763524_69763647_69768221_69768324_69786778_69786887_69791753_69791976_69794744_69794901_69809549_69809767_69811878_69812083_69813539_69813637_69814297_69814528_69815145_69815272_69816099_69816223_69817943_69818028_69830201_69830275_69833922_69834057_69835184_69835328_69838339_69838430_69840437
35524	chr12	+	1694	3	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	57	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTGCTGAGTCGTTCAT	NA	False	NA	NA	False	NA	NA	NA	86516947	86568391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517337_86566085_86566177_86567177
35526	chr5	-	2494	5	NNC	ENSMUSG00000029524.17	novel	1794	5	NA	NA	4	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	18.8480768249708	2886	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGACTGTGAACTTAC	9383	False	NA	NA	False	NA	NA	NA	115622421	115616064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115617236_115617369_115617872_115618289_115618585_115620682_115621178_115622390
35527	chr9	+	3862	9	NNC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-60	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	70.9449610613749	1	155	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATGGGACTGATATTTG	NA	False	NA	NA	False	NA	NA	NA	19533539	19561025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_19533582_19540392_19540495_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
35528	chr2	+	1574	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	83	1	-19	-1	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	3479	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTCATGGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	151384485	151403611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
35530	chr3	-	2236	2	ISM	ENSMUSG00000052544.10	ENSMUST00000199707.2	416	3	19055	-1899	19055	1899	3prime_fragment	FALSE	canonical	3	111	junction_1	0	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	152912365	152909103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_152911229_152912254
35531	chr15	+	576	5	FSM	ENSMUSG00000033020.8	ENSMUST00000230271.2	885	5	301	8	-41	2	multi-exon	FALSE	canonical	3	2023	junction_4	39.9335385359224	83	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCTCTCCCCGTTACCT	NA	False	NA	NA	False	NA	NA	NA	79025509	79035966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035608_79035788
35532	chr5	+	2268	10	Antisense	novelGene_ENSMUSG00000001467.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGGGCCCTTCACACGC	NA	False	NA	NA	False	NA	NA	NA	4132493	4154435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_4133307_4136462_4136636_4137782_4137874_4141844_4142030_4142380_4142496_4149118_4149301_4150143_4150277_4151179_4151355_4152927_4153017_4154123
35533	chr1	+	1665	3	Antisense	novelGene_ENSMUSG00000033159.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCGCACGCGCGGGCGTC	NA	False	NA	NA	False	NA	NA	NA	75116247	75119316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_75116547_75117541_75117649_75118057
35534	chrX	-	1459	5	Antisense	novelGene_ENSMUSG00000031314.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTTCTTGCAACTCTTTG	NA	False	NA	NA	False	NA	NA	NA	100583666	100571207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100571295_100576460_100576608_100577100_100577214_100577348_100577466_100582671
35536	chr4	+	2470	9	NIC	ENSMUSG00000028757.5	novel	2120	11	NA	NA	145	-15	intron_retention	FALSE	canonical	3	2261	junction_7	68.9524292537979	10	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCTCTAGGTCCTATCA	NA	False	NA	NA	False	NA	NA	NA	138032185	138039924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038842_138038950_138039058_138039144
35537	chr8	+	2141	8	NIC	ENSMUSG00000005481.19	novel	1927	11	NA	NA	19	-7	intron_retention	FALSE	canonical	3	2216	junction_4	111.015902519616	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGAATGCATGGCTC	NA	False	NA	NA	False	NA	NA	NA	84441919	84449896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446569_84447177_84447271_84447585_84447770_84448362_84448991_84449077_84449423_84449515_84449664_84449753
35538	chr5	+	3299	18	FSM	ENSMUSG00000029439.15	ENSMUST00000053737.9	3313	18	10	4	-9	-1	multi-exon	FALSE	canonical	3	56	junction_11	20.649823847033	86	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGCCTGGGGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	129578294	129648444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
35539	chr3	+	4100	23	NNC	ENSMUSG00000027820.13	novel	3782	23	NA	NA	161	575	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	162.752613567772	1	189	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATCCAAAACTATCATAAA	NA	False	NA	NA	False	NA	NA	NA	63203676	63289619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234294_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247446_63247572_63249327_63249374_63250929_63251055_63251162_63251242_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
35540	chr16	+	3809	2	Antisense	novelGene_ENSMUSG00000022674.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	98	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAATGCCGGGATTAAAAA	NA	False	NA	NA	False	NA	NA	NA	15390335	15394447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_15392847_15393149
35541	chr7	+	1550	2	Antisense	novelGene_ENSMUSG00000030654.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCCAAGCCACCGCAGCA	NA	False	NA	NA	False	NA	NA	NA	117718122	117720422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_117719634_117720383
35542	chr17	+	2295	6	NNC	ENSMUSG00000023902.19	novel	2698	6	NA	NA	33	0	intron_retention	FALSE	non_canonical	0	0	junction_5	122.038354626732	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	918	False	NA	NA	False	NA	NA	NA	23819868	23829986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240_23829586_23829684
35543	chr3	+	2682	24	Intergenic	novelGene_3092	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	82	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTCAACCTCCTTTTG	1002	False	NA	NA	False	NA	NA	NA	27155048	27208029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_27155116_27156536_27156626_27169543_27169700_27171926_27172063_27176119_27176220_27176558_27176625_27178051_27178125_27181027_27181125_27181882_27181993_27184201_27184273_27185936_27186054_27191173_27191315_27192658_27192876_27192996_27193060_27193162_27193278_27193679_27193810_27195772_27195848_27199113_27199207_27200102_27200193_27200987_27201168_27202942_27203039_27203143_27203215_27204164_27204330_27207865
35544	chr11	+	3132	21	ISM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	55	0	55	0	intron_retention	FALSE	canonical	3	286	junction_14	46.7074940453885	146	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8237	False	NA	NA	False	NA	NA	NA	120358515	120374805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840
35545	chr15	+	1889	14	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-4052	236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	400.112010944154	1	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTTTCTAAACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	101990406	102003870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992809_101993123_101993231_101994437_101994493_101994939_101995075_101997058_101997168_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001623_102002085_102002149_102003106_102003213_102003411_102003485_102003687
35546	chr7	-	3653	15	FSM	ENSMUSG00000025507.14	ENSMUST00000131980.8	3653	15	-3	3	-1	1	multi-exon	FALSE	canonical	3	36	junction_14	11.4118180776218	3	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATACCTTTGCAGAGATCA	NA	False	NA	NA	False	NA	NA	NA	141023908	141018028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141022478_141022880_141023267_141023881
35547	chr4	-	2320	6	NNC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	62	0	intron_retention	TRUE	non_canonical	0	0	junction_4	387.699574412973	38	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5801	False	NA	NA	False	NA	NA	NA	139079782	139074755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_139075117_139075231_139076061_139076316_139076399_139076924_139077673_139077708_139077806_139079579
35548	chr13	+	5355	12	FSM	ENSMUSG00000021703.10	ENSMUST00000049488.9	5366	12	3	8	3	-8	multi-exon	FALSE	canonical	3	40	junction_8	5.03377025451168	33	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAAATCATGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	92747601	92848447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_92747796_92797525_92797694_92819262_92819445_92819863_92819947_92821652_92821747_92825126_92825339_92827451_92827548_92829979_92830107_92838184_92838252_92842018_92842059_92842647_92842793_92844500
35549	chr11	-	2901	5	NIC	ENSMUSG00000056962.12	novel	1437	5	NA	NA	47	0	intron_retention	FALSE	canonical	3	254	junction_4	31.693847983481	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	116734228	116728258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116728590_116729815_116731372_116731894_116732182_116733157_116733547_116733890
35550	chr7	-	1763	13	NNC	ENSMUSG00000030491.17	novel	1620	12	NA	NA	4	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	205.532033188665	304	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCAGAATTCTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	35237114	35193054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35193363_35193610_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35233172_35233305_35236938
35551	chr6	-	4276	8	Antisense	novelGene_ENSMUSG00000108011.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGGGCGGCGGGTCCC	9859	False	NA	NA	False	NA	NA	NA	128352849	128340044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_128340079_128342618_128343159_128344245_128344400_128346254_128346447_128347917_128348046_128348927_128348976_128349496_128349567_128349739
35552	chrX	+	1282	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-47	-25	47	mono-exon	FALSE	NA	NA	NA	NA	NA	10	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTTCTACTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
35553	chr9	-	2607	7	NIC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	16	-452	intron_retention	FALSE	canonical	3	88	junction_6	46.8772036519055	5	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGGTGAAATTGCTTGC	NA	False	NA	NA	False	NA	NA	NA	27066673	27009131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_27009698_27010007_27010271_27011378_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
35554	chr11	-	2378	10	FSM	ENSMUSG00000018537.17	ENSMUST00000169807.8	2347	10	-33	2	-33	-2	multi-exon	FALSE	canonical	3	83	junction_9	43.2000800182158	857	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGCCTGTGGTTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	97590507	97579650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
35555	chr4	-	2360	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	-2	200	-2	-200	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	1	115	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAACCCCAAGACTGC	NA	False	NA	NA	False	NA	NA	NA	147726967	147696595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
35557	chr6	-	1758	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	2	-4	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCCAGGAACTGGGCC	NA	False	NA	NA	False	NA	NA	NA	124942473	124935782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
35558	chr4	-	1558	3	NNC	ENSMUSG00000055900.15	novel	974	3	NA	NA	-411	102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	301	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGGATTGTCTAAGCCT	NA	False	NA	NA	False	NA	NA	NA	116410723	116408727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116409322_116409689_116410151_116410220
35562	chr4	+	3441	10	Intergenic	novelGene_1915	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCTTCATGAACTAGAACA	NA	False	NA	NA	False	NA	NA	NA	107929111	107969469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_107931663_107942353_107942498_107944206_107944360_107948433_107948518_107950017_107950081_107955214_107955346_107959487_107959552_107962239_107962371_107964811_107964888_107969425
35563	chr6	-	458	3	Antisense	novelGene_ENSMUSG00000042097.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCCAGAAGGCTGCG	NA	False	NA	NA	False	NA	NA	NA	117846392	117840039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_117840102_117843353_117843536_117846178
35566	chr1	+	1925	13	FSM	ENSMUSG00000033793.13	ENSMUST00000192698.3	1811	13	-25	-89	-3	-21	multi-exon	FALSE	canonical	3	60	junction_6	140.296783640966	1293	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAATTGGGAGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	5153351	5232731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
35567	chr4	-	2305	7	NIC	ENSMUSG00000028706.15	novel	2439	6	NA	NA	71	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	61.1655313246131	236	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTGTGCGTGCCTTG	NA	False	NA	NA	False	NA	NA	NA	115911002	115890201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_115891509_115892948_115893074_115897265_115897427_115900297_115900398_115901881_115902037_115905526_115905862_115910880
35571	chr15	-	2819	8	ISM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	1143	24	-169	-24	3prime_fragment	FALSE	canonical	3	62	junction_5	9.89743318610787	116	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATAAAGTTGTCTACA	NA	False	NA	NA	False	NA	NA	NA	89360485	89356702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710
35572	chr11	+	2209	8	NNC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	99	750	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	112.924030811399	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTTTTTGGTGGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	105017403	105031970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105017433_105017601_105017694_105019681_105019902_105021272_105021323_105022398_105022460_105026163_105026271_105028544_105028611_105030386
35573	chr19	+	2905	19	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	289.066932315034	3	108	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTCCAGGCTCAGCTAT	3469	False	NA	NA	False	NA	NA	NA	8919238	8929659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919391_8919605_8919747_8920828_8920897_8921376_8921471_8923126_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
35574	chr8	+	2527	4	NNC	ENSMUSG00000052446.18	novel	2713	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	217.317484084666	1	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	72704914	72724177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719637_72719685_72721732_72723241_72723295
35575	chr10	+	1539	11	Antisense	novelGene_ENSMUSG00000036112.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCGAGAAAGAGAGAGGGAG	6002	False	NA	NA	False	NA	NA	NA	93697097	93725554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_93697464_93698237_93698354_93698790_93698884_93701271_93701366_93704728_93704822_93705976_93706164_93707352_93707509_93715399_93715507_93715936_93716001_93722855_93722966_93725401
35576	chr5	+	1989	11	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	1	-1936	intron_retention	FALSE	non_canonical	0	0	junction_5	61.7680338039022	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGAACCACGTTGTGGA	64	False	NA	NA	False	NA	NA	NA	120649300	120669186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380
35577	chr7	+	2662	19	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	18	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	144.868139277682	1	69	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTGAGAAAACACCTAGCT	951	False	NA	NA	False	NA	NA	NA	97130180	97190588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162731_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179620_97190264
35578	chr6	-	4721	11	FSM	ENSMUSG00000042129.9	ENSMUST00000035842.7	6460	11	109	1630	-34	-1630	multi-exon	FALSE	canonical	3	10	junction_1	5.29528091794949	49	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGACTCTGTTAAGTG	8715	False	NA	NA	False	NA	NA	NA	116650804	116611598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_116615260_116616401_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
35579	chr6	-	1738	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	1	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3282.11612987719	1	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAAGGAAATTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	51446873	51439750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440456_51441083_51441192_51441407_51441578_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
35580	chr11	+	983	5	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3999	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4147.21758381448	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAACACAGGTGTAACTAT	3855	False	NA	NA	False	NA	NA	NA	75646428	75656662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75646507_75647642_75647850_75650117_75650255_75655445_75655547_75656202
35581	chr6	-	1404	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	748	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3019.5703268309	2	30	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAAAGTGCTTCATTTCA	NA	False	NA	NA	False	NA	NA	NA	51446825	51438991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439036_51439318_51439545_51440196_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
35582	chr12	+	1997	15	NIC	ENSMUSG00000021177.17	novel	2036	16	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	128.512367387067	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	NA	False	NA	NA	NA	99850790	99921478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_99850812_99857435_99858005_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
35583	chr17	-	3856	8	NNC	ENSMUSG00000025728.17	novel	3278	10	NA	NA	-4	-6	intron_retention	FALSE	canonical	0	0	junction_7	97.7650244208019	1	203	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGAGTACCAGCTTGGG	NA	False	NA	NA	False	NA	NA	NA	26160913	26145407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26151206_26153731_26153853_26153976_26154109_26155737_26156428_26160774
35584	chr14	-	2662	6	Antisense	novelGene_ENSMUSG00000075592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCTAAGCCACGCCTCC	NA	False	NA	NA	False	NA	NA	NA	56105579	56091609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_56091882_56100407_56101068_56101188_56102591_56103413_56103542_56103666_56103762_56105474
35586	chr15	-	1258	9	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	829	5	6	-1	3prime_fragment	FALSE	canonical	3	23824	junction_4	2715.03229435213	2	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	4347	False	NA	NA	False	NA	NA	NA	79966778	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590
35587	chr15	-	2230	6	NIC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	940	junction_1	78.0579272079396	7	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845065	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
35588	chr2	+	1738	14	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-2	-435	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	278.813695723644	3	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	164675724	164681504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164675771_164675949_164676149_164676608_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
35589	chr3	-	5226	20	NNC	ENSMUSG00000105104.2	novel	499	2	NA	NA	-55816	2745	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	13	29	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCAACTTAAGTGACGTCA	2028	False	NA	NA	False	NA	NA	NA	127407026	127347131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_127347304_127348943_127349036_127349821_127349921_127353217_127353277_127354540_127354686_127355121_127357340_127361274_127361349_127366786_127366968_127377225_127377818_127379665_127379851_127381587_127381785_127383615_127383756_127389525_127389672_127392349_127392464_127394625_127394888_127396045_127396206_127400016_127400094_127402131_127402280_127405430_127405559_127406989
35590	chr2	-	2798	10	NIC	ENSMUSG00000027635.16	novel	2636	11	NA	NA	12	-103	intron_retention	FALSE	canonical	3	12	junction_9	64.026807657148	18	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAATGAGGTGGGAAAGCT	8146	False	NA	NA	False	NA	NA	NA	156848983	156837299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156848283_156848894
35591	chr1	-	3318	2	FSM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	20	3	20	-3	multi-exon	FALSE	canonical	3	113	junction_1	0	351	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATCCAGCCTTAAGTTT	NA	False	NA	NA	False	NA	NA	NA	119840918	119835622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_119838885_119840862
35592	chr5	+	1541	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	156	58	-7	-35	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	111	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTACTCTAATAAACGGAGC	5429	False	NA	NA	False	NA	NA	NA	100666330	100695611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
35594	chrX	-	1440	10	ISM	ENSMUSG00000031387.15	ENSMUST00000155597.2	1310	11	78	-16	63	0	3prime_fragment	FALSE	canonical	3	1767	junction_7	148.332958801025	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	72974284	72965728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013
35595	chr1	+	1893	15	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	61	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	176.073109235676	44	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGCAAATAAAAACTGTAAT	NA	False	NA	NA	False	NA	NA	NA	131080978	131101183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098816_131101030
35596	chr11	-	2824	21	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-39	-80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	183.727209470998	1	109	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTTTGTTGTAGCCT	NA	False	NA	NA	False	NA	NA	NA	106146669	106140047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146500_106146586
35597	chr8	+	2646	8	NIC	ENSMUSG00000003808.19	novel	1708	13	NA	NA	-1	-26	intron_retention	FALSE	canonical	3	23	junction_2	221.499712074259	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCATTTGGTGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	85583616	85595859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85591182_85594005_85594091_85594177
35599	chr15	-	2387	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	8	1	intron_retention	FALSE	canonical	3	334	junction_9	43.2403560931421	1	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCAACTACACTGTCTTC	8674	False	NA	NA	False	NA	NA	NA	76501040	76496589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
35600	chr14	-	2811	14	NNC	ENSMUSG00000022031.7	novel	2851	15	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	131.137310033568	1	77	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3459	False	NA	NA	False	NA	NA	NA	65830509	65767897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65797503_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
35601	chr11	+	2631	8	ISM	ENSMUSG00000020513.16	ENSMUST00000069503.13	1871	9	-23	431	-23	-430	5prime_fragment	FALSE	canonical	3	29	junction_1	9.05313115300278	3	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTAAGTGGCTATGTGAG	NA	False	NA	NA	False	NA	NA	NA	86435793	86457755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510
35602	chr17	+	2605	11	NNC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	12	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	136.387132824178	562	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCAGAAATATTGCTGT	NA	False	NA	NA	False	NA	NA	NA	26780503	26875897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040_26874796_26874895
35603	chr8	+	2849	23	NNC	ENSMUSG00000032939.15	novel	2928	23	NA	NA	6	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	333.14103992054	1	98	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTCTTTTAAACATTCT	NA	False	NA	NA	False	NA	NA	NA	94941210	95041474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94941260_94947064_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
35604	chr7	-	1474	11	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-4	-14	combination_of_known_junctions	FALSE	canonical	3	40	junction_10	722.358671298407	21	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTAATGTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	89629771	89603881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89629619
35605	chr17	+	2557	4	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	0	5	intron_retention	FALSE	canonical	2	34	junction_3	408.635398477529	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTGCACACATGAACGTC	NA	False	NA	NA	False	NA	NA	NA	48717107	48724287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_48717401_48717852_48717933_48718291_48718437_48722248
35606	chr14	-	1784	6	NIC	ENSMUSG00000037722.9	novel	2788	6	NA	NA	2	703	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	483.994628069362	21	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTGTCTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	45626245	45614907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45625918
35607	chr15	-	2330	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	113	1974	113	1627	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	1	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTCTAATTTCTTGTACC	268	False	NA	NA	False	NA	NA	NA	37007533	36999244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
35608	chr7	-	3094	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	68	715	-49	-252	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	1	112	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTCCTATCCCAGGTCC	NA	False	NA	NA	False	NA	NA	NA	28661697	28593387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
35609	SIRV1	-	1170	3	ISM	SIRV1A	SIRV102	1300	4	2598	0	2598	0	3prime_fragment	FALSE	canonical	3	4191	junction_1	920	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	7768	1006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV1_-_1485_6337_6814_7552
35610	chrX	+	1668	9	NNC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	486.599938347715	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGTTGGCATGAGTC	NA	False	NA	NA	False	NA	NA	NA	72235804	72246532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72242067_72243351_72243451_72245455_72245552_72245645
35611	chr5	+	925	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	923	275	-5	0	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	2	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121343466	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
35614	chr11	-	3211	4	FSM	ENSMUSG00000020495.14	ENSMUST00000020801.14	3218	4	3	4	3	0	multi-exon	FALSE	canonical	3	76	junction_2	5.65685424949238	155	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATACTTGGTATCTGTTT	NA	False	NA	NA	False	NA	NA	NA	86977597	86968561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86968977_86970991_86971865_86974425_86974572_86975820
35615	chr18	+	2594	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	2	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	1	108	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAATTAAAGATGTA	6432	False	NA	-90	True	NA	NA	NA	77126250	77240815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
35616	chr9	-	2331	10	NNC	ENSMUSG00000031922.13	novel	2262	10	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	93.6195347347476	1	122	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTAACAGCCAGCTAACAA	NA	False	NA	NA	False	NA	NA	NA	13738351	13719098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738204
35618	chr8	-	1735	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	168	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3334	False	NA	NA	False	NA	NA	NA	105261268	105237659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
35619	chr17	+	1888	5	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3592.95870418796	13	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6697576	6703695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6697638_6699278_6699321_6701054_6702362_6702868_6702947_6703295
35621	chr3	+	1948	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	99	2	51	-2	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACAGGCTGGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	121220244	121251854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
35623	chr4	-	1496	8	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	-32	0	intron_retention	FALSE	canonical	3	2352	junction_7	347.574393739921	56	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	0	True	NA	NA	False	NA	NA	NA	43031402	43028025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43028294_43028937_43029067_43029278_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
35624	chrX	+	2450	7	FSM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	-99	5	-99	1	multi-exon	FALSE	canonical	3	131	junction_5	4.78423336480244	355	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCACGCCTCCTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	55777047	55838701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55837203
35626	chr2	+	1590	12	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	67	-709	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1635.0550323086	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGTCGTTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	121244430	121268459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257188_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265310_121265362_121265399_121266401_121266482_121266837_121266896_121268066
35627	chr2	-	1005	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11395	168	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCGCTGCACCCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426236	11413673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414285_11425842
35628	chr14	-	2155	19	NNC	ENSMUSG00000022040.9	novel	2035	19	NA	NA	2302	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	65.4167315404255	4	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGGCTCCAGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	66359647	66321834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66322292_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66359434
35629	chr15	+	1538	1	FSM	ENSMUSG00000042406.9	ENSMUST00000230434.2	2019	1	473	8	473	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	34	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGTACCTATGTGGGTT	4957	False	NA	NA	False	NA	NA	NA	80140196	80141734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80140200_80141700
35630	chr18	-	1947	10	Antisense	novelGene_ENSMUSG00000009535.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGAACTGACAGCAAAACC	NA	False	NA	NA	False	NA	NA	NA	68454971	68438883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_68439265_68440711_68440837_68442370_68442505_68444670_68444790_68446733_68446918_68447058_68447223_68451062_68451181_68452186_68452288_68453292_68453331_68454388
35631	chr18	-	1835	18	Antisense	novelGene_ENSMUSG00000024474.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	15	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACCACGAAAACCTGTCT	NA	False	NA	NA	False	NA	NA	NA	36890687	36877747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_36877842_36878663_36878730_36880398_36880494_36881216_36881274_36881601_36881772_36881923_36882037_36882264_36882338_36882443_36882490_36884155_36884319_36885407_36885516_36886552_36886720_36887602_36887685_36888477_36888559_36888749_36888806_36889598_36889690_36889874_36889983_36890334_36890371_36890458
35632	chr17	-	2274	21	ISM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	37	3005	8	-68	5prime_fragment	FALSE	canonical	3	500	junction_13	41.5539107666174	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGGCACGAGGCTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	24926597	24919927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
35633	chr8	+	2552	5	NNC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-146	2880	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	87.2707711665252	3	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	NA	False	NA	NA	NA	14938857	14947939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_14939119_14940491_14940624_14942351_14942443_14944571_14945231_14946530
35636	chr12	-	3080	17	NNC	ENSMUSG00000020593.17	novel	4114	20	NA	NA	9742	-558	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	36.0223454955393	1	176	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAGCAGGCATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	16629979	16587746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16623602_16623787_16626948_16627257_16629882
35637	chr9	+	2291	4	FSM	ENSMUSG00000032171.8	ENSMUST00000034689.8	3843	4	32	1520	32	-1520	multi-exon	FALSE	canonical	3	2626	junction_2	73.4892282356174	3941	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGCGTCCCCAGCATATA	NA	False	NA	NA	False	NA	NA	NA	20563422	20576360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20563494_20566657_20566877_20573593_20573705_20574470
35638	chr9	+	1667	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	180	11	-4	4	multi-exon	FALSE	canonical	3	1280	junction_13	396.993628196225	1	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1175	False	NA	NA	False	NA	NA	NA	108437664	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
35639	chr11	-	2801	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	10	-1	10	1	mono-exon	FALSE	NA	NA	NA	NA	NA	102	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGAGATTTGGCTTATT	NA	False	NA	NA	False	NA	NA	NA	73029110	73026309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_73026300_73029100
35643	chr2	-	2747	8	NIC	ENSMUSG00000026851.10	novel	1984	9	NA	NA	6	-663	intron_retention	FALSE	canonical	3	354	junction_3	15.6973935182025	37	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTTGCCTGTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	30871947	30862851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30871555_30871789
35644	chr13	+	3650	2	Intergenic	novelGene_1321	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	72	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGACACTGAGACCATA	2361	False	NA	NA	False	NA	NA	NA	21947473	21951822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_21948398_21949096
35645	chr10	-	2325	4	FSM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	-7	-283	0	283	multi-exon	FALSE	canonical	3	32	junction_1	52.6898683071254	117	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGGGTACTTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	82077114	82060400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_82062428_82063364_82063426_82063632_82063760_82077004
35646	chr2	+	2929	12	NNC	ENSMUSG00000040282.14	novel	2735	11	NA	NA	-104	6	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	114.47061046905	467	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTCTACCTGGAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	115412092	115609255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_115412467_115434044_115434112_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
35647	chr1	+	2884	14	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-8	0	intron_retention	FALSE	non_canonical	0	0	junction_13	98.3951699396653	1	101	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	NA	False	NA	NA	NA	132405220	132433397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501_132432153_132433179
35648	chr2	-	1268	8	ISM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	4425	1017	4425	-1017	internal_fragment	FALSE	canonical	3	11792	junction_7	900.750072926753	3	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	8210	False	NA	-17	True	NA	NA	NA	154730277	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102
35650	chr4	+	3059	6	NIC	ENSMUSG00000028861.14	novel	937	8	NA	NA	-109	-2	intron_retention	FALSE	canonical	3	1282	junction_5	27.9427987145168	14	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTGAAGAATGATGGAAGAT	NA	False	NA	NA	False	NA	NA	NA	125940917	125949323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_125941272_125942427_125942507_125944272_125944322_125945117_125947352_125948753_125948946_125949172
35652	chr4	-	2050	9	FSM	ENSMUSG00000029022.19	ENSMUST00000156374.9	1909	9	-144	3	23	-3	multi-exon	FALSE	canonical	3	219	junction_8	23.8995292840675	750	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCCTGTCTCCATGTA	NA	False	NA	NA	False	NA	NA	NA	147953100	147945250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
35653	chr12	-	1357	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	77	-17	-77	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGGTAGAGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
35654	chr16	+	1965	11	NNC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	5	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	143.759660544953	6	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCGCCTCTAGTTTGATA	NA	False	NA	NA	False	NA	NA	NA	18631075	18654000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18631168_18633579_18633717_18636611_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
35655	chr2	+	2128	7	NNC	ENSMUSG00000027306.16	novel	2960	11	NA	NA	-9966	-12006	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1293	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCCCGCCCACCTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	119438812	119448980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119438852_119439474_119440845_119442231_119442337_119443492_119443575_119446012_119446139_119448337_119448402_119448638
35656	chr8	-	2188	14	NNC	ENSMUSG00000031575.19	novel	2234	15	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1248.59902082009	1	101	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	NA	False	NA	NA	NA	26330091	26306897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309658_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318942_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039
35657	chr6	-	2038	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	255.663771946113	15	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	12	False	NA	NA	False	NA	NA	NA	30509735	30482413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30501990_30505832_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
35658	chr15	-	1693	15	NIC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	9	0	intron_retention	FALSE	canonical	1	1	junction_12	133.913999207228	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	NA	False	NA	NA	NA	102259172	102246690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255470_102255527_102258387_102258516_102258930
35659	chr2	+	1640	11	ISM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	3205	2845	-14	129	3prime_fragment	FALSE	canonical	3	1110	junction_3	155.724628752166	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	7172	False	NA	NA	False	NA	NA	NA	127432346	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
35660	chr11	+	1341	9	NIC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	905.183821110386	104	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACACATTGTGTGACTCTG	NA	False	NA	NA	False	NA	NA	NA	9068620	9086163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_9068868_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
35662	chr15	-	1724	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-25	-84	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	1847.77498900705	1	66	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601911	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594383_31594475_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
35663	chr16	-	2588	15	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	10	2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	191.640660761601	731	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATATTCTTATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30406371	30380186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389859_30390355_30392010_30392188_30393363_30393425_30396616_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
35664	chr10	-	2823	8	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	15	-7155	intron_retention	FALSE	canonical	3	109	junction_1	18.4810990043385	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAAGCAAATACTCAGATA	5731	False	NA	NA	False	NA	NA	NA	4382319	4361138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_4361732_4363308_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
35665	chr7	-	2145	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	0	-30	intron_retention	FALSE	canonical	3	712	junction_7	45.9422191453569	219	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTGTTGTGTAAATACAG	7990	False	NA	NA	False	NA	NA	NA	126641578	126626933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
35666	chr7	-	1805	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	621.456675883364	9	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGGTGTGTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	99002321	98994639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998202_98998442_98998672_99002259
35667	chr3	+	1465	14	NIC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	40	186	combination_of_known_splicesites	FALSE	canonical	3	10	junction_2	92.4469462438997	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATATAGTGTGTTATTAA	NA	False	NA	NA	False	NA	NA	NA	95467028	95495168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95467044_95468538_95468592_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
35668	chr8	-	1926	6	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	1061	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2107.6799946861	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACTAGAAATGAGTTCA	NA	False	NA	NA	False	NA	NA	NA	43758912	43748111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43748731_43748799_43749574_43753664_43753743_43757512_43757647_43758470_43758596_43758716
35669	chr3	-	2824	8	NNC	ENSMUSG00000074513.10	novel	2799	8	NA	NA	-32	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	63.1257248897559	33	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTGCCCTGTCCTTATA	NA	False	NA	NA	False	NA	NA	NA	84489964	84403398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84441955_84455291_84455343_84489720
35670	chr13	-	3385	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	48	5311	27	2194	multi-exon	FALSE	canonical	3	467	junction_2	27.5	1385	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAAGACTTTGCTGTCTA	NA	False	NA	NA	False	NA	NA	NA	18167886	18161225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_18164368_18166212_18166335_18167765
35671	chr12	+	1294	7	ISM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	4767	1689	4456	-1689	3prime_fragment	FALSE	canonical	3	3896	junction_2	443.2126715497	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	1428	False	NA	NA	False	NA	NA	NA	78913359	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
35672	chr15	+	2556	6	NNC	ENSMUSG00000044250.9	novel	1790	2	NA	NA	-11379	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	1.4142135623731	20	27	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAATTGTTTCCAAAAGT	NA	False	NA	NA	False	NA	NA	NA	97133608	97283556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_97134036_97175214_97175298_97177731_97177797_97259080_97259217_97271836_97272031_97281905
35673	chr13	-	2199	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	-19	6	-19	-6	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	686	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCCACCTTAAAGACTGT	7386	False	NA	NA	False	NA	NA	NA	54759176	54740219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
35674	chr19	-	2779	7	NIC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	-21	2	intron_retention	FALSE	canonical	3	2610	junction_6	220.242038574736	1	116	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCCCTGCCTCATGAGA	NA	False	NA	NA	False	NA	NA	NA	8691264	8684948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8687148_8689197_8690268_8690705
35676	chr9	+	1387	7	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	406.90443868582	28	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGACTCTGAGTGGC	636	False	NA	NA	False	NA	NA	NA	45281750	45307448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301931_45301971_45302074_45302150_45302858_45302896_45303512_45303542_45306337
35677	chr1	+	2300	6	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	21682	-6	intron_retention	FALSE	canonical	2	8	junction_1	77.9717897704035	15	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCACTTTTCTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	165979717	165994072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165980032_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
35678	chr5	-	3285	6	Antisense	novelGene_ENSMUSG00000032840.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTTACCTTCCCGCAG	NA	False	NA	NA	False	NA	NA	NA	118401995	118383351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_118383520_118393730_118393891_118397039_118397191_118397437_118397552_118399162_118399987_118400127
35679	chr4	+	3758	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	115	24	17	-24	multi-exon	FALSE	canonical	3	161	junction_8	15.5060472074607	256	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCTGTGATTGTTGAAG	NA	False	NA	NA	False	NA	NA	NA	141521037	141543263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
35680	chr7	+	2804	9	FSM	ENSMUSG00000074071.12	ENSMUST00000210558.2	2815	9	-18	29	-18	-24	multi-exon	FALSE	canonical	3	103	junction_5	20.4328167417025	124	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCTTCCACATGTTAATA	NA	False	NA	NA	False	NA	NA	NA	67925724	68012811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
35681	chr7	-	2191	9	NIC	ENSMUSG00000070426.13	novel	2249	9	NA	NA	1	4	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	120.056692337412	22	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACACGCATTTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	101714364	101668354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684623_101688756_101688899_101691833_101691872_101714272
35683	chr3	+	3810	2	NNC	ENSMUSG00000074480.5	novel	5778	2	NA	NA	4971	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	127	25	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTAAGGCTCTTGTCTT	3552	False	NA	NA	False	NA	NA	NA	88444672	88448693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88445089_88445299
35684	chr17	-	1866	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	27	7972	-20	-41	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	5	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACATCATAGGCTGAAA	NA	False	NA	NA	False	NA	NA	NA	30831606	30811881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
35685	chr10	+	2698	4	Antisense	novelGene_ENSMUSG00000020079.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	48	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCCTGAAACAGAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	62265211	62270390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62265610_62266242_62268244_62268829_62268911_62270172
35686	chr17	-	3583	7	NNC	ENSMUSG00000024228.13	novel	4113	7	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	20.5642624202496	79	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTTTGTTTGTGTATTG	NA	False	NA	NA	False	NA	NA	NA	59320325	59307105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849_59317440_59318037_59318251_59320208
35687	chr16	+	2445	5	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-1380	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	311.529292362693	9	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATGTTATCTTTCATGT	4571	False	NA	NA	False	NA	NA	NA	38401090	38411666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38402487_38405537_38405881_38406582_38406771_38408544_38408670_38411273
35688	chr2	+	1430	12	NNC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	-12	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	633.444016716592	10	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5106	False	NA	NA	False	NA	NA	NA	71219591	71271859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252018_71252068_71252084_71264398_71264551_71269039_71269157_71271511
35689	chr6	-	3041	12	FSM	ENSMUSG00000030353.16	ENSMUST00000006311.13	3076	12	362	-327	287	327	multi-exon	FALSE	canonical	3	52	junction_4	17.0405447474327	99	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTCCTTAACTCAGAGC	1719	False	NA	NA	False	NA	NA	NA	128277414	128203778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128277257
35690	chr7	+	1599	14	NNC	ENSMUSG00000025487.16	novel	1989	13	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	461.948856002621	2	11	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGCTTCTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	140462355	140478556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140475938_140476023_140477329_140477411_140477520_140477638_140478105
35691	chr7	-	3775	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	-48	13	8	-13	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	4	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTAAAATCTCAGCTCACT	NA	False	NA	NA	False	NA	NA	NA	144493654	144483680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
35692	chr5	-	1896	7	FSM	ENSMUSG00000029103.17	ENSMUST00000147028.3	1573	7	-10	-313	-3	87	multi-exon	FALSE	canonical	3	809	junction_2	75.6233356107021	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCCTCGAGTCCTTGCC	NA	False	NA	NA	False	NA	NA	NA	35263043	35250325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255618_35256500_35256623_35259738_35259884_35262822
35693	chr3	+	2818	11	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.1099525101254	154	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	NA	False	NA	NA	NA	103716840	103729341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103717100_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
35694	chr11	-	2076	5	NNC	ENSMUSG00000020737.13	novel	1375	5	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	726.210842317849	7	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	115405211	115388178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115389535_115391197_115391511_115392830_115392929_115393857_115394001_115405045
35695	chr12	+	2490	13	NNC	ENSMUSG00000017843.15	novel	4108	13	NA	NA	-1681	-10	at_least_one_novel_splicesite	FALSE	canonical	1	38	junction_1	268.830130173106	1305	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGAAGATATCAGTGTG	3239	False	NA	NA	False	NA	NA	NA	110450490	110538112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110450715_110452262_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
35696	chr7	+	1467	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2862.36284583637	1	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAACAGTGATGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	46495277	46505039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498510_46499690_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
35697	chr14	-	2367	7	NIC	ENSMUSG00000034190.10	novel	2649	10	NA	NA	-154	-14	intron_retention	FALSE	canonical	3	245	junction_6	11.2200217864712	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAAAACACCAGGTTTT	NA	False	NA	NA	False	NA	NA	NA	69958839	69954462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69957317_69957560_69957610_69958376_69958511_69958655
35698	chr5	-	1993	5	NNC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-25	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	365.563520472161	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTACTAAGCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	130284271	130274584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130283061_130283643
35699	chr13	-	1526	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	2	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.944400230224	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314335	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311587_34311678_34312212_34312300_34312515_34312854_34312966_34313228_34313338_34314159
35700	chr3	+	2041	11	NNC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	-1	-347	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	392.432019590655	2	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGATTTTTAACTTTCTAC	4855	False	NA	NA	False	NA	NA	NA	34074252	34124124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34118388_34118469_34122309_34122402_34123065
35701	chr11	+	2452	11	NIC	ENSMUSG00000057522.16	novel	2881	11	NA	NA	-28	-382	combination_of_known_junctions	FALSE	canonical	3	26	junction_4	92.4878370381749	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGTCTTTTGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	95304877	95383850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365131_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
35702	chr9	+	1440	11	NNC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	4	-31	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	89.6016182889573	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTGCCTCCCCAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	107828169	107845909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107828372_107833063_107833457_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792
35703	chr1	+	413	2	ISM	ENSMUSG00000026622.16	ENSMUST00000126446.8	2044	6	22	5943	22	-3476	5prime_fragment	FALSE	canonical	3	453	junction_1	0	57	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGACCAAGGATAGGTAAG	NA	False	NA	NA	False	NA	NA	NA	191553643	191554461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_191553854_191554258
35704	chr17	+	1594	4	NIC	ENSMUSG00000024181.10	novel	1046	5	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1395	junction_2	20.2703943940144	271	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGGAGTCCTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	26342493	26345585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26342824_26343529_26344366_26344451_26344539_26345244
35705	chr16	-	2260	18	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	6	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	289.795919123242	1	76	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCCCCGTGGCAGACGTT	NA	False	NA	NA	False	NA	NA	NA	3895685	3857845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880236_3883109_3883238_3886119_3886203_3886720_3886886_3895556
35706	chr9	+	2316	24	NNC	ENSMUSG00000032604.17	novel	2800	24	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	237.011808468475	6	86	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCTCTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	108385291	108393136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387527_108388337_108388410_108388534_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390276_108390396_108390484_108390556_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392178_108392223_108392315_108392432_108392994
35707	chr12	-	3485	11	NNC	ENSMUSG00000021190.15	novel	1835	13	NA	NA	1608	-1	intron_retention	FALSE	canonical	0	0	junction_3	192.224452138639	11	103	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTCTGGCTTTGTGGTTT	9965	False	NA	NA	False	NA	NA	NA	102388420	102360343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_102360872_102361100_102361169_102361902_102362069_102364441_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379818_102388239
35708	chr8	-	2027	1	FSM	ENSMUSG00000077563.3	ENSMUST00000104375.3	131	1	-1516	-380	-1516	380	mono-exon	FALSE	NA	NA	NA	NA	NA	41	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	NA	False	NA	NA	NA	71350049	71348022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71348000_71350000
35710	chr3	+	1983	11	ISM	ENSMUSG00000034349.15	ENSMUST00000148385.8	4057	24	22447	0	-2918	0	3prime_fragment	FALSE	canonical	3	677	junction_5	115.144952125571	2	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	68934787	68941956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
35711	chr5	+	2827	15	NNC	ENSMUSG00000079109.12	novel	5477	15	NA	NA	-6	-34	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	36.0490029299688	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGGACAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	143846868	143868226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143846898_143848743_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853176_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
35712	chr8	+	2643	7	Antisense	novelGene_ENSMUSG00000039720.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCCACCCCCAAAGTGA	NA	False	NA	NA	False	NA	NA	NA	27687487	27713856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_27687712_27687957_27688098_27688419_27689446_27689537_27690371_27690747_27690934_27692401_27692490_27713710
35713	chrX	-	2621	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	196	4	43	-2	multi-exon	FALSE	canonical	3	1240	junction_10	166.264514821681	1	120	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTAAGTGTGCTTCTCA	NA	False	NA	NA	False	NA	NA	NA	93585553	93579083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
35714	chr17	-	4449	4	NNC	ENSMUSG00000117654.2	novel	1195	2	NA	NA	37	7553	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.77123616632825	12	34	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAACATAGTGTAATGT	NA	False	NA	NA	False	NA	NA	NA	33096879	33075082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33079037_33083417_33083596_33095981_33096101_33096681
35715	chr5	+	2155	15	NIC	ENSMUSG00000029146.15	novel	2019	16	NA	NA	8	1	intron_retention	FALSE	canonical	2	10	junction_3	136.187464585417	2	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTACCTTTGGTTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	31350593	31356239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31350810_31351212_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355622_31355701
35716	chr3	+	2879	7	FSM	ENSMUSG00000028189.13	ENSMUST00000061937.13	2892	7	5	8	-3	-8	multi-exon	FALSE	canonical	3	19	junction_1	4.91313432432789	185	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGAAACACAGTGACTTA	5959	False	NA	NA	False	NA	NA	NA	146156229	146171596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
35717	chr2	-	3285	5	NIC	ENSMUSG00000027408.8	novel	2366	14	NA	NA	1384	-1487	intron_retention	FALSE	canonical	3	131	junction_2	15.8823801742686	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	130238110	130234182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130236354_130236656_130236746_130236841_130237644_130237748_130237889_130238027
35718	chr17	-	2810	5	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	10	1843	multi-exon	FALSE	canonical	2	3	junction_4	64.8035492855137	233	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTTGGGTATTGATTGT	NA	False	NA	NA	False	NA	NA	NA	37292119	37278243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732_37281958_37292031
35719	chr6	+	868	1	FSM	ENSMUSG00000040078.10	ENSMUST00000160012.2	480	1	-99	-289	-99	289	mono-exon	FALSE	NA	NA	NA	NA	NA	10	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGCAACTGCTCCAGCAG	NA	False	NA	NA	False	NA	NA	NA	85820862	85821730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85820900_85821700
35720	chr12	+	1566	10	NNC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-19	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	277.324697158982	1224	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTCATACAGATGAAATGG	NA	False	NA	NA	False	NA	NA	NA	59060159	59075184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074491
35722	chr1	+	5302	34	ISM	ENSMUSG00000026490.19	ENSMUST00000097450.10	5160	36	70398	-415	40768	-7	3prime_fragment	FALSE	canonical	3	46	junction_6	13.0848751526108	55	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATGTGTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	179859072	179990146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_179859154_179864393_179864490_179867616_179867766_179889354_179889449_179892530_179892732_179894715_179894965_179896861_179896942_179899909_179900077_179902134_179902258_179911936_179912071_179921508_179921752_179921945_179922057_179928589_179928838_179933611_179933718_179936718_179936844_179938828_179938935_179939309_179939459_179941587_179941680_179945231_179945309_179961861_179961946_179964216_179964323_179965294_179965432_179965996_179966137_179967287_179967370_179968906_179969124_179969841_179969905_179971971_179972566_179974509_179974608_179976717_179976803_179977699_179977824_179978724_179978843_179987170_179987289_179989104_179989263_179989599
35723	chr14	-	2537	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	165	149	-27	-123	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	2	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATCTGAACCCAGGTCCT	8143	False	NA	NA	False	NA	NA	NA	20530036	20505476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
35725	chr12	-	3010	3	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-7	79	intron_retention	FALSE	canonical	3	70	junction_2	21.5	15	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACTTGGATATTGTATAG	NA	False	NA	NA	False	NA	NA	NA	73333491	73327175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_73329511_73331408_73332050_73333457
35726	chr11	-	1528	9	NNC	ENSMUSG00000041278.11	novel	1438	8	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	316.180105912753	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGGACTATGTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	43638812	43620832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638519_43638604_43638748
35727	chr11	-	2996	17	NNC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	93	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	199.307306297963	1	129	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATGAAAATGTCTCTCTT	1223	False	NA	NA	False	NA	NA	NA	107080085	107057486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064267_107064415_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070875_107070945_107071738_107071928_107072564_107072710_107074398_107074449_107075567_107075755_107077634_107077749_107079942
35728	chr17	+	2394	8	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	224.828188369951	1	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5626	False	NA	NA	False	NA	NA	NA	34128475	34134564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132637_34132882_34133037_34134316
35729	chr5	+	1584	10	NNC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	-19	-4	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_4	428.962342587347	58	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGCAGTACTTGGTTTT	5388	False	NA	NA	False	NA	NA	NA	100666289	100695642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100677988_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
35730	chr1	+	2206	3	Antisense	novelGene_ENSMUSG00000026112.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATTTTCCTTCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	37457475	37467493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_37458448_37458545_37459709_37467422
35732	chr8	-	2244	17	NNC	ENSMUSG00000031948.15	novel	2189	16	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	647.189005913265	1	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737903	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732454_112734880_112735019_112735113_112735172_112736853_112736913_112737841
35733	chr15	-	1675	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	382	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	765.82332037141	2	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACCCTGCCAGCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	83056411	83037699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038042_83038177_83038287_83038362_83038924_83043026_83043127_83044304_83044355_83045049_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
35735	chr2	-	3659	26	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	-74	-1649	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	59.0661188838407	1	132	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAATGAGAATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	62242649	62162065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62163064_62164599_62164674_62164974_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
35736	chr7	+	2622	12	FSM	ENSMUSG00000030435.17	ENSMUST00000005041.15	2183	12	-442	3	-442	2	multi-exon	FALSE	canonical	3	1559	junction_7	130.155406157663	688	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGATCCTCATCTGTGT	2438	False	NA	NA	False	NA	NA	NA	5064699	5082934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
35737	chr7	-	1696	8	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	3085	10834	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAGTGTTCTAATTCTT	NA	False	NA	NA	False	NA	NA	NA	79965866	79954503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79954511_79959138_79959232_79960485_79960634_79960815_79960935_79961970_79962074_79962777_79962956_79963273_79963315_79964859
35739	chr11	-	4374	19	NNC	ENSMUSG00000020807.16	novel	4390	19	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_18	6.14159065735165	36	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTATTTGAAGTAATT	NA	False	NA	NA	False	NA	NA	NA	72098245	72044922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_72046265_72049617_72049843_72050225_72050347_72056342_72056425_72057463_72057650_72059541_72059629_72060606_72060686_72066028_72066119_72066312_72066403_72067486_72067607_72069230_72069398_72071228_72071453_72080373_72080585_72082244_72082461_72085385_72085449_72086608_72086716_72089188_72089790_72093237_72093377_72098021
35742	chr9	+	1200	6	Antisense	novelGene_ENSMUSG00000004099.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	266	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCCTGGGGCTGCAGCC	6	True	NA	NA	False	NA	NA	NA	20818504	20821535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_20818858_20819166_20819256_20819765_20820051_20820387_20820579_20820984_20821166_20821434
35743	chr6	-	1646	6	NNC	ENSMUSG00000005667.9	novel	1421	9	NA	NA	0	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1236.14228954437	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGCTCATCTGTCGGGTG	NA	False	NA	NA	False	NA	NA	NA	83294535	83282710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83285921_83288214_83288345_83288793_83288917_83290347_83290529_83294410
35744	chr16	-	1984	9	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	-3	580	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	689.282224038166	1	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAAGTGTTGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	22084679	22064617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073297_22073733_22073868_22084490
35745	chr2	+	4991	18	FSM	ENSMUSG00000027007.17	ENSMUST00000111785.9	5168	18	177	0	68	0	multi-exon	FALSE	canonical	3	47	junction_14	7.70386143235054	78	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAAATTTATTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	79465872	79503310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_79466089_79466376_79466423_79469600_79469651_79470489_79470547_79472305_79472346_79472434_79472534_79473747_79473957_79474748_79475453_79481731_79481805_79485430_79485520_79487490_79488694_79490576_79490655_79490736_79490865_79491197_79491349_79491982_79492049_79492652_79493109_79501073_79501192_79502102
35746	chr9	-	3547	16	NNC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	115	0	intron_retention	FALSE	canonical	3	6	junction_12	47.1536495582968	3	89	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTCTGTGCTGGTACT	NA	False	NA	NA	False	NA	NA	NA	107971525	107962612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107964303_107964379_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969379_107969474_107969613_107969752_107969917_107969989_107970082_107970179_107970274_107970820_107970948_107971425
35747	chr3	-	1449	6	Antisense	novelGene_ENSMUSG00000053931.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	22	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATACAAGTTCCGGGAT	NA	False	NA	NA	False	NA	NA	NA	121251586	121243596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
35748	chr12	+	1709	9	FSM	ENSMUSG00000036613.9	ENSMUST00000221877.2	4091	9	8	2374	8	0	multi-exon	FALSE	canonical	3	234	junction_3	17.1641887370187	485	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1106	False	NA	NA	False	NA	NA	NA	28801809	28917490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
35749	chr5	+	2224	12	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	3	459	intron_retention	FALSE	canonical	3	57	junction_1	75.0500659339765	3	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAGGACATGATTAATA	9185	False	NA	NA	False	NA	NA	NA	110987851	111015045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128
35750	chr9	-	4642	24	NNC	ENSMUSG00000097211.3	novel	1022	2	NA	NA	46122	69954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	212	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATGGAGAAGTCACACCA	298	False	NA	NA	False	NA	NA	NA	72271027	72199062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_72199199_72202533_72202603_72203252_72203316_72205981_72206122_72208975_72209047_72209146_72209287_72215230_72215359_72216542_72216689_72219359_72219540_72219939_72220061_72226024_72226122_72226371_72226600_72229735_72229893_72230281_72230381_72231287_72231435_72236307_72236445_72238147_72238463_72238579_72238714_72242326_72242387_72246022_72246145_72246291_72246331_72258806_72258848_72267562_72267630_72269222
35751	chr6	+	1883	17	NIC	ENSMUSG00000030016.15	novel	4366	26	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	87.9887910119806	2	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACTCAGAGGTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	83891351	83946209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83891462_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098
35752	chr18	+	2694	10	Antisense	novelGene_ENSMUSG00000094306.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	116	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGCCTCGGGGCTGCGA	NA	False	NA	NA	False	NA	NA	NA	14758727	14815759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_14760365_14766603_14766721_14769557_14769671_14773308_14773422_14774024_14774180_14784075_14784301_14788082_14788249_14803391_14803451_14812447_14812521_14815723
35753	chr7	+	1777	9	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	31	-12	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	271.883678022422	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATTCCTTCTAGAGGACT	NA	False	NA	NA	False	NA	NA	NA	63835159	63861163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63858023_63858199_63858616_63858741_63859704_63859778_63860585
35754	chr4	+	2466	4	NIC	ENSMUSG00000028797.21	novel	1519	5	NA	NA	-1	2	intron_retention	FALSE	canonical	3	436	junction_1	140.878986683213	7	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGCTTAGCAAATGTTT	3202	False	NA	NA	False	NA	NA	NA	129494498	129502316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129494525_129494775_129496055_129500879_129500973_129501248
35755	chr5	-	2122	4	ISM	ENSMUSG00000047881.15	ENSMUST00000087327.13	3093	8	38086	601	40	-601	3prime_fragment	FALSE	canonical	3	541	junction_1	12.2565175405668	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTATACATTTTGCAAAAAA	5462	False	NA	NA	False	NA	NA	NA	64088080	64067008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820
35756	chr5	-	2656	2	NNC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	12617	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGGCTTCCACAACTC	NA	False	NA	NA	False	NA	NA	NA	148266922	148264236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148266658_148266687
35757	chr6	+	865	1	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGTAGCACAATAGCACA	8794	False	NA	NA	False	NA	NA	NA	122704767	122705632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122704800_122705600
35759	chr6	+	2948	9	NNC	ENSMUSG00000062190.13	novel	2245	10	NA	NA	315	0	intron_retention	FALSE	canonical	1	1	junction_1	24.6361015584853	143	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTATGGAGTCTTAATA	NA	False	NA	NA	False	NA	NA	NA	57680386	57716424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_57680497_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
35760	chr1	-	1799	16	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	531.45784404786	1	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	78465495	78401721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452831_78452993_78456638_78456749_78458944_78459001_78465447
35762	chr3	+	2822	14	NNC	ENSMUSG00000027865.11	novel	3008	14	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_6	26.3712682095922	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTCTATAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	100069842	100114295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093923_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
35763	chr13	-	1675	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	28	1760	-12	-1753	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	342	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATGTGGGAGCCCCAA	NA	False	NA	NA	False	NA	NA	NA	4659145	4642508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
35764	chr2	-	1811	15	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-8	-23	intron_retention	FALSE	non_canonical	0	0	junction_1	153.61381474865	2	29	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGAATCCATCCACCCCC	NA	False	NA	NA	False	NA	NA	NA	164699561	164681460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681725_164682029_164682111_164682240_164682305_164682414_164682458_164686354_164686419_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699464
35765	chr17	-	2491	6	ISM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	39	36	-13	-29	intron_retention	FALSE	canonical	3	1264	junction_4	57.164324538999	28	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTTATACAATAAAGCTG	4335	False	NA	NA	False	NA	NA	NA	36227242	36221306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587
35767	chr9	+	1750	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	2	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	726.685285479369	1	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCCATAATGAATGATGTA	NA	False	NA	NA	False	NA	NA	NA	54493766	54511224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497181_54499482_54499547_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
35768	chr15	+	2671	17	FSM	ENSMUSG00000033128.10	ENSMUST00000041587.8	3034	17	361	2	0	-2	multi-exon	TRUE	canonical	3	379	junction_6	54.6157028701453	188	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGCTGCTCTTGTCACC	NA	False	NA	NA	False	NA	NA	NA	78761750	78778783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773915_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
35769	chr1	+	2356	6	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	610.127986573309	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACTGGGGCAAGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	180720672	180726649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014_180725244_180725287_180725472_180725525
35772	chr3	-	1814	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-58	-6	intron_retention	FALSE	canonical	3	71	junction_2	79.5	146	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAACTGTTCTCATGGTC	NA	False	NA	NA	False	NA	NA	NA	75563096	75554758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75556298_75562696_75562869_75562993
35775	chr3	-	3465	10	Intergenic	novelGene_3197	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGGGCGGGGCGAGTGCC	NA	False	NA	NA	False	NA	NA	NA	152491538	152419742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_152419863_152422696_152422752_152428120_152428212_152443820_152443957_152445763_152445876_152448123_152450198_152450348_152450462_152453237_152453409_152472073_152472158_152491029
35777	chr18	-	3033	5	FSM	ENSMUSG00000040446.5	ENSMUST00000234403.2	2950	5	-91	8	55	-8	multi-exon	FALSE	canonical	3	215	junction_1	46.5886252211846	43	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCTGTATTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	24663206	24638491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24640067_24640161_24641149_24641226_24641334_24642849_24642980_24662972
35778	chr8	+	2098	16	NIC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	7	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	324.831580292858	1	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGGACTAGACATTTTAA	NA	False	NA	NA	False	NA	NA	NA	107620289	107649716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
35779	chr19	-	2057	1	Intergenic	novelGene_1193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	425	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTACAGGTGAGCTACCA	1364	False	NA	NA	False	NA	NA	NA	5071146	5069089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_5069100_5071100
35780	chr1	+	2692	1	FSM	ENSMUSG00000101523.3	ENSMUST00000190422.3	2633	1	-40	-19	-40	19	mono-exon	FALSE	NA	NA	NA	NA	NA	1	124	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	156351541	156354233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_156351500_156354200
35781	chr3	+	1712	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	0	-76	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1090.15055146162	1	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCACTGACACGTATC	3841	False	NA	NA	False	NA	NA	NA	88204459	88228995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206714_88208201_88208299_88210074_88210172_88212319_88212438_88216467_88216646_88218986_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750_88228795_88228913
35782	chr1	-	1304	8	NNC	ENSMUSG00000001674.12	novel	451	3	NA	NA	45	7798	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	234.059734221146	18	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTCAGCTCACTTTCTC	NA	False	NA	NA	False	NA	NA	NA	121495673	121473765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_121473786_121487821_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
35783	chr4	+	1006	4	NNC	ENSMUSG00000015247.11	novel	848	5	NA	NA	-19	-2872	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	267.58716129308	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGCAGCACTGTGCAAAC	-17	True	NA	NA	False	NA	NA	NA	53011930	53018633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_53012048_53015014_53015226_53017048_53017208_53018114
35785	chr4	-	1483	3	NNC	ENSMUSG00000055900.15	novel	974	3	NA	NA	-577	93	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAGCACTTCTGGATTG	NA	False	NA	NA	False	NA	NA	NA	116410889	116408736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116409333_116409669_116410151_116410483
35786	chr18	+	2026	16	Intergenic	novelGene_4547	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.498887651569859	3	42	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGCAGGCCCCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	56659836	56695374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_56660087_56664504_56664881_56665050_56665168_56665557_56665667_56667261_56667351_56670278_56670371_56671772_56671814_56675295_56675395_56678036_56678114_56679974_56680016_56681513_56681651_56683366_56683490_56684229_56684313_56692293_56692359_56693846_56693899_56695099
35788	chr1	-	2176	13	FSM	ENSMUSG00000053483.16	ENSMUST00000065941.12	2219	13	36	7	0	-3	multi-exon	FALSE	non_canonical	0	0	junction_3	116.920794652714	314	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGATGTTCATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	171115528	171109525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
35789	chr11	+	2323	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	174	0	-51	0	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	NA	False	NA	NA	NA	76836503	76878205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
35792	chr7	-	2548	4	NIC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	-1	intron_retention	FALSE	canonical	3	4604	junction_1	442.398764314127	1221	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTTTCTCAATTAGTT	6416	False	NA	NA	False	NA	NA	NA	121701051	121690054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121690187_121690808_121692928_121695831_121695955_121700877
35793	chr7	+	3238	5	NIC	ENSMUSG00000040952.17	novel	593	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	8873	junction_4	6185.21555808688	20	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCTGGTCTGGATCTGG	NA	False	NA	NA	False	NA	NA	NA	24584057	24589228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_24584093_24584560_24584632_24584876_24587891_24588331_24588387_24589165
35794	chrX	+	2691	22	NIC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	81	-103	combination_of_known_splicesites	FALSE	canonical	2	3	junction_14	251.003410371534	1	96	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCCAGCCGCAGCCACA	NA	False	NA	NA	False	NA	NA	NA	143118945	143152664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
35795	chrX	-	2879	10	NNC	ENSMUSG00000031386.15	novel	8262	26	NA	NA	-754	1040	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	174.030506762322	1	47	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGCACATTTTACCATTG	NA	False	NA	NA	False	NA	NA	NA	72993613	72987886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72992025_72992507_72992674_72992803
35796	chr15	-	1749	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-17	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2776.65860523039	2	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGCTTCCACTTATTC	NA	False	NA	NA	False	NA	NA	NA	31601903	31590962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592594_31592791_31592923_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595975_31597556_31597722_31598145_31598207_31601746
35797	chr9	+	1968	18	NNC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	213.020605920443	381	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTGTTTTTTAATTTC	NA	False	NA	NA	False	NA	NA	NA	21914314	21925521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922826_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
35799	chr5	+	2264	11	FSM	ENSMUSG00000058503.12	ENSMUST00000199666.5	1450	11	-9	-805	-4	307	multi-exon	FALSE	canonical	0	0	junction_10	76.7604064606227	422	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCTGTGCTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	3593828	3620545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609137_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
35801	chr9	-	1267	12	Antisense	novelGene_ENSMUSG00000032604.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.287479787288034	3	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGTGACACACATAAGCAA	NA	False	NA	NA	False	NA	NA	NA	108393063	108390083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108390166_108390262_108390394_108390482_108390574_108390863_108391005_108391090_108391177_108391260_108391406_108391486_108391592_108391739_108391835_108391943_108392071_108392163_108392230_108392302_108392429_108392991
35803	chr6	+	1328	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	-16	305	7	-8	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTTTGCATGCTTAAG	5856	False	NA	NA	False	NA	NA	NA	67243978	67260990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
35804	chr18	+	3499	14	NIC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-32	1404	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	52.5754459305187	13	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATATCTCAGTGAGTGAC	NA	False	NA	NA	False	NA	NA	NA	75151819	75285503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75283751
35805	chr12	+	3740	15	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-10	969	combination_of_known_junctions	FALSE	canonical	3	104	junction_7	16.9175672492428	3	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAACTAAACACTGGAAT	NA	False	NA	NA	False	NA	NA	NA	78795670	78885824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
35806	chr5	-	1631	3	NNC	ENSMUSG00000029616.10	novel	5204	3	NA	NA	19	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	410	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAAAAAGTCTGTTTTG	3250	False	NA	NA	False	NA	NA	NA	121590531	121582839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121583636_121585203_121585761_121590253
35808	chr11	+	1943	1	Intergenic	novelGene_2495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCTACCTGCTTATC	NA	False	NA	NA	False	NA	NA	NA	106606658	106608601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_106606700_106608600
35810	chr10	+	3499	9	FSM	ENSMUSG00000040195.12	ENSMUST00000048099.5	6002	9	-17	2520	-15	1589	multi-exon	TRUE	canonical	3	115	junction_7	22.4499443206436	62	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTGTCCTAAAGTGACA	NA	False	NA	NA	False	NA	NA	NA	127512917	127534398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
35811	chr7	-	5228	6	FSM	ENSMUSG00000049516.10	ENSMUST00000061639.10	5223	6	-6	1	-6	-1	multi-exon	FALSE	canonical	3	20	junction_2	5.03587132480567	38	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTACTGGTTTTCATTT	9266	False	NA	NA	False	NA	NA	NA	46658165	46640144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46643135_46644312_46644391_46645764_46645934_46647219_46648753_46649518_46649634_46657822
35813	chr6	+	2674	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	121	6	121	-6	multi-exon	FALSE	canonical	3	116	junction_4	25.1445819213603	202	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAATGTTCACAGGGTGT	NA	False	NA	NA	False	NA	NA	NA	47897530	47909567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
35814	chr8	-	3360	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	3	101	2	0	multi-exon	FALSE	canonical	3	60	junction_1	33.5	104	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTAGATGATTGGGTA	NA	False	NA	NA	False	NA	NA	NA	48166964	48162479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_48165330_48165953_48166054_48166554
35815	chr6	-	2170	2	ISM	ENSMUSG00000030042.16	ENSMUST00000141138.8	890	4	-340	-25	10	25	intron_retention	FALSE	canonical	3	893	junction_1	0	25	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAACTGCTTTTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	82629841	82624271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_82625018_82628417
35816	chr15	-	2612	16	NNC	ENSMUSG00000054277.9	novel	2619	16	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_9	10.2515039547051	184	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGGTTGCCTGTGTTGTC	3534	False	NA	NA	False	NA	NA	NA	83234439	83183940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208355_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
35817	chr17	+	2208	15	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-32	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	346.185275391602	1	99	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAATACTTGGTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	21165716	21186159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177257_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
35818	chr6	-	319	1	Antisense	novelGene_ENSMUSG00000055093.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGGACTCCTTTTGAATG	NA	False	NA	NA	False	NA	NA	NA	122434380	122434061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122434100_122434400
35819	chr14	+	3931	6	FSM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	801	186	4	-186	multi-exon	FALSE	canonical	3	223	junction_4	16.2357629940819	1	151	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGCAATATATTTAATGT	6403	False	NA	NA	False	NA	NA	NA	31217156	31231629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
35820	chr11	-	1553	9	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-11	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1063.41545855794	6	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGACTTGCTGTTTTC	9746	False	NA	NA	False	NA	NA	NA	106890287	106879462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106883477_106883518_106887334_106887473_106888063_106888162_106890184
35821	chr4	+	2960	9	NIC	ENSMUSG00000037366.15	novel	3180	11	NA	NA	-1	-8	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	14.6543508897528	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGAAGTCGCTGGCTGGC	2342	False	NA	NA	False	NA	NA	NA	134130279	134154716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_134130416_134131403_134131555_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
35822	chr17	-	2529	7	Antisense	novelGene_ENSMUSG00000096696.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	132	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGATTCCGGAAGAAACAC	NA	False	NA	NA	False	NA	NA	NA	17310014	17225412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_17225531_17281023_17281160_17305782_17305901_17306141_17306211_17307503_17308920_17309256_17309527_17309612
35823	chr9	+	2443	4	NIC	ENSMUSG00000032555.11	novel	5224	28	NA	NA	400	0	intron_retention	FALSE	canonical	3	636	junction_2	57.1333722286915	6	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	549	False	NA	NA	False	NA	NA	NA	103221534	103227627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_103223079_103223882_103223973_103224125_103224288_103226980
35825	chrX	+	2892	16	Antisense	novelGene_ENSMUSG00000031388.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	91	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCGGCGGCGGAGCTCGC	NA	False	NA	NA	False	NA	NA	NA	72941404	72965383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72941489_72941567_72941655_72941738_72941821_72943164_72943275_72943700_72944075_72944239_72944332_72947837_72948076_72948185_72948315_72949256_72950489_72961456_72961533_72963106_72963153_72963359_72963479_72963571_72963614_72964587_72964651_72964880_72964977_72965361
35826	chr10	-	1479	4	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	2	2	intron_retention	FALSE	canonical	3	2594	junction_3	461.374757292449	169	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663098	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23662779_23662891_23662943_23663053
35827	chr10	-	766	1	FSM	ENSMUSG00000093798.3	ENSMUST00000177767.3	1941	1	1269	-94	1269	94	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGGAGGTAACTGAAG	NA	False	NA	NA	False	NA	NA	NA	14621777	14621011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_14621000_14621800
35828	chr1	-	1816	3	ISM	ENSMUSG00000026202.14	ENSMUST00000079464.13	2083	4	764	604	-426	36	3prime_fragment	FALSE	canonical	3	248	junction_2	2.5	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATAAACAGTCTCCTTGC	NA	False	NA	NA	False	NA	NA	NA	75194504	75192219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_75193238_75193470_75193620_75193855
35829	chr19	+	2609	7	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	2318	-28	intron_retention	FALSE	canonical	1	1	junction_2	122.913248540044	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAATAATAAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	38045854	38062841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38046432_38048528_38048805_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
35830	chr2	-	3087	7	NIC	ENSMUSG00000027233.5	novel	2434	18	NA	NA	60326	-14	intron_retention	FALSE	canonical	3	83	junction_6	11.1865494630332	19	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGGGATGTTGCTTCCG	NA	False	NA	NA	False	NA	NA	NA	121956344	121950602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_121952360_121954198_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199
35831	chr2	+	2721	12	FSM	ENSMUSG00000039787.14	ENSMUST00000047521.7	2715	12	-6	0	-6	0	multi-exon	FALSE	canonical	2	9	junction_10	4.78288961380578	260	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACAGCTGAGCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	29759499	29772852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
35832	chr1	-	3098	4	FSM	ENSMUSG00000001305.6	ENSMUST00000162336.2	3092	4	0	-6	0	6	multi-exon	FALSE	canonical	3	1054	junction_3	20.6774165590278	26	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCTTCCCTGCTCAGA	NA	False	NA	NA	False	NA	NA	NA	186481522	186453282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186472061_186481360
35833	chr11	-	1519	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	403.933633367276	1679	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190888	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186855_119186960_119188630_119188704_119190653
35834	chr11	+	4878	31	ISM	ENSMUSG00000020747.19	ENSMUST00000103033.8	5238	34	1487	2	1487	-2	3prime_fragment	FALSE	canonical	3	50	junction_12	17.6694651871527	144	25	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGTGGTGGATCCATG	NA	False	NA	NA	False	NA	NA	NA	115668068	115689857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_115668204_115676265_115676386_115676640_115676769_115677001_115677139_115678187_115678391_115679064_115679217_115679488_115679592_115679770_115679858_115680069_115680187_115680444_115680502_115680750_115680856_115680995_115681161_115681792_115682003_115682572_115682889_115683142_115683317_115683686_115683790_115683882_115684101_115684833_115685016_115685091_115685231_115685488_115685605_115685806_115685907_115686142_115686252_115686450_115686641_115686891_115686970_115687215_115687302_115687561_115687644_115687955_115688105_115688192_115688288_115688388_115688483_115688633_115688805_115689100
35837	chrX	-	1883	9	NNC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	3	0	intron_retention	FALSE	non_canonical	0	0	junction_3	830.358506911322	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	72974395	72965726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72970310_72971512_72971595_72971884_72971967_72972721_72973460_72973610_72973687_72974013_72974124_72974319
35839	chr4	+	377	1	Antisense	novelGene_ENSMUSG00000062627.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTCTCTGTGTAGCC	9635	False	NA	NA	False	NA	NA	NA	94830412	94830789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_94830400_94830800
35840	chr15	+	2073	5	FSM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	-2	3218	-2	-740	multi-exon	FALSE	canonical	3	110	junction_4	5.2618912949623	283	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGTTAATCCCATGAG	NA	False	NA	NA	False	NA	NA	NA	76423029	76425590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871_76424996_76425113
35841	chr18	+	1612	17	NNC	ENSMUSG00000024474.8	novel	2349	18	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	232.421685399082	13	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	NA	False	NA	NA	NA	36877746	36890688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881663_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
35842	chr7	+	1804	11	NIC	ENSMUSG00000030890.17	novel	1795	13	NA	NA	-1	0	intron_retention	FALSE	canonical	3	270	junction_6	31.8220049651181	776	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGGCTCGTGTGGGGA	NA	False	NA	NA	False	NA	NA	NA	105386306	105392125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
35843	chr1	+	1547	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	30	3	0	-2	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	1593	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTAGTCTCACTGTG	46	False	NA	NA	False	NA	NA	NA	180731887	180735650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
35844	chr10	-	2883	28	NNC	ENSMUSG00000052798.14	novel	3114	28	NA	NA	24	-139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	174.174769929832	1	121	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTGGTTTGTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	117628532	117586667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595227_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
35845	chr17	+	1031	5	ISM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	47	8	0	-7	intron_retention	FALSE	canonical	3	3280	junction_1	2907.57519249288	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGATTATTATGTTTTTT	6237	False	NA	NA	False	NA	NA	NA	24939083	24940892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596
35846	chr18	+	2220	7	Fusion	ENSMUSG00000117461.2_ENSMUSG00000073639.7	novel	729	7	NA	NA	41	983	multi-exon	FALSE	canonical	0	0	junction_2	405.244781993961	453	22	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCTGAGTCATGCTGTC	20	False	NA	NA	False	NA	NA	NA	6765260	6790223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_+_6765333_6770053_6770119_6778476_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
35847	chrX	+	2490	17	NNC	ENSMUSG00000000787.13	novel	4692	17	NA	NA	-224	-125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	128.341341741467	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCTAAAATCAAACCTTGG	NA	False	NA	NA	False	NA	NA	NA	13146984	13158136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156225_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157926
35848	chr4	+	2043	14	NNC	ENSMUSG00000028330.9	novel	3010	23	NA	NA	135	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	102.488157780336	6	26	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	-6	True	NA	NA	False	NA	NA	NA	46138747	46172403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46168480_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
35849	chr6	-	1812	7	NNC	ENSMUSG00000030127.16	novel	795	7	NA	NA	-1218	-58	intron_retention	FALSE	canonical	3	22	junction_6	831.059497803189	2	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATATATATTGACACATG	NA	False	NA	NA	False	NA	NA	NA	124943719	124935836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941749_124941892_124943600
35850	chr2	+	1272	10	NIC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	160	junction_1	558.351166105488	16	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8636	False	NA	NA	False	NA	NA	NA	61542126	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_61542218_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
35851	chr14	+	3795	13	NIC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-34	98	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	15.3622914957372	62	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAATACTACTTGCGGAA	NA	False	NA	NA	False	NA	NA	NA	26836821	27125966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_26836881_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
35852	chr16	-	3256	23	FSM	ENSMUSG00000022680.15	ENSMUST00000154150.8	3178	23	-78	0	-5	0	multi-exon	FALSE	canonical	3	195	junction_15	13.5268328374224	98	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAACTTTTGAATAA	9765	False	NA	NA	False	NA	NA	NA	13720924	13653455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
35853	chr7	-	1183	10	FSM	ENSMUSG00000030751.19	ENSMUST00000135570.8	960	10	-36	-187	5	-2	multi-exon	FALSE	canonical	3	33	junction_9	875.758056108824	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875297	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
35854	chr17	-	1291	9	ISM	ENSMUSG00000038002.10	ENSMUST00000233774.2	7674	21	54	22743	48	19433	5prime_fragment	FALSE	canonical	2	2	junction_5	2	1	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGCACTCCATGAAGTAC	5427	False	NA	NA	False	NA	NA	NA	25234708	25202942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25203000_25203948_25204073_25204495_25204582_25211243_25211293_25213559_25213644_25216426_25216581_25222185_25222380_25232661_25233000_25234503
35856	chrM	+	1016	2	Genic_Genomic	ENSMUSG00000064351.1	novel	1545	1	NA	NA	462	65	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAGATATTAGTAAAAT	12	True	NA	-97	True	NA	NA	NA	5789	6937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_6430_6561
35857	chr7	+	1298	1	Intergenic	novelGene_2964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTGTTCTCTCCTAGA	926	False	NA	NA	False	NA	NA	NA	45560314	45561612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_45560300_45561600
35858	chr11	+	1781	9	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	55	junction_3	157.209205757805	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	NA	False	NA	NA	NA	70538112	70542247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70538779_70538854_70538936_70540046_70540121_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
35860	chr11	-	2552	8	NIC	ENSMUSG00000001034.18	novel	3019	7	NA	NA	8	-12	combination_of_known_junctions	FALSE	canonical	2	2	junction_3	80.0122439609931	4	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAACCTGACTCTGCGT	NA	False	NA	NA	False	NA	NA	NA	61385084	61379649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61380755_61381171_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61384905
35861	chr11	+	2494	12	FSM	ENSMUSG00000020463.16	ENSMUST00000102856.9	2410	12	-85	1	-85	-1	multi-exon	FALSE	canonical	3	259	junction_3	30.8097333552481	37	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTATTTTTTATTCTTACT	NA	False	NA	NA	False	NA	NA	NA	29122804	29159640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316
35862	chr9	-	2453	21	NIC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	1	-9	intron_retention	FALSE	canonical	3	126	junction_20	23.4803641368698	313	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACACAGAGCCTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	107971674	107962621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
35863	chr7	+	2087	11	Antisense	novelGene_ENSMUSG00000030741.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCCACCGCCTACGGAA	NA	False	NA	NA	False	NA	NA	NA	125969446	125976647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_125969584_125969904_125970079_125970349_125970455_125970718_125971007_125971148_125971320_125971583_125971740_125971916_125972058_125972935_125973011_125974240_125974379_125975848_125975911_125976007
35864	chr10	+	1750	16	NNC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	117.033328586348	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATTTTAAAGTGTCATT	NA	False	NA	NA	False	NA	NA	NA	93289307	93320732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310424_93318111_93318195_93318823_93318929_93320524
35865	chr9	+	1964	13	NIC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	1203	junction_9	78.7400787401181	399	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGTTCTCCCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	106354514	106362614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
35867	chr5	-	1631	6	NNC	ENSMUSG00000036980.14	novel	968	7	NA	NA	1	133	intron_retention	FALSE	canonical	0	0	junction_5	290.500946642175	1	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTTTCAACAGTCAATGG	1953	False	NA	NA	False	NA	NA	NA	138185487	138180803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185043
35868	chr15	-	920	9	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	10382.7309359099	10	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79963900_79965133_79965233_79965815_79965985_79966590_79966784_79967524
35869	chr8	+	2196	9	NIC	ENSMUSG00000003808.19	novel	1826	13	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	551	junction_7	64.4903093495449	15	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTCTGTTGTCATTCATT	NA	False	NA	NA	False	NA	NA	NA	85583644	85595883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85583811_85587534_85587673_85587755_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594278_85594378_85594968_85595494
35870	chr8	+	1860	3	NIC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	0	361	intron_retention	FALSE	canonical	3	714	junction_2	71.5	16	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATTTGTTATTTCATAT	NA	False	NA	NA	False	NA	NA	NA	107783508	107785659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_107783623_107783724_107784820_107785008
35872	chr7	-	2908	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	163	-18	-7	18	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	333	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGTGCCTGCCTCCTGTTT	NA	False	NA	NA	False	NA	NA	NA	51655603	51646900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
35873	chr15	-	1627	9	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	-4	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	110.864148285187	271	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACAGAAAACATTCATGA	6879	False	NA	NA	False	NA	NA	NA	81244982	81203126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213333_81222152_81222289_81224174_81224242_81228301_81228363_81244877
35874	chr3	+	1298	3	NIC	ENSMUSG00000038374.11	novel	2620	5	NA	NA	322	465	intron_retention	FALSE	canonical	3	4428	junction_2	32	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCCCTCTGAAGATAGCT	9221	False	NA	NA	False	NA	NA	NA	96537834	96539681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_96538319_96538747_96538885_96539004
35875	chr16	+	3546	11	FSM	ENSMUSG00000022906.16	ENSMUST00000114878.8	3548	11	0	2	0	-2	multi-exon	FALSE	canonical	3	21	junction_5	7.49399759807808	96	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGCTGTGAATCGTGAA	NA	False	NA	NA	False	NA	NA	NA	35758839	35792973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_35759431_35761402_35761506_35763738_35763773_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
35876	chr2	+	4180	20	NNC	ENSMUSG00000026991.21	novel	4614	22	NA	NA	205	-10	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	24.2519097114792	170	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCCTGGAGAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	59096732	59185538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_59096845_59119561_59119597_59135409_59135536_59135648_59135837_59138351_59138902_59140445_59140635_59142037_59142258_59148855_59148989_59152845_59153060_59165091_59165276_59167927_59168046_59169062_59169255_59169424_59169599_59172436_59172588_59175141_59175338_59178063_59178149_59178267_59178386_59180837_59180967_59182605_59182680_59184546
35877	chr4	-	1811	5	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	47	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	592.252638238109	3	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTATTGTATGCATTGCTG	NA	False	NA	NA	False	NA	NA	NA	148172441	148161527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148161655_148163747_148165062_148166019_148166216_148166727_148166834_148172373
35878	chr4	-	2613	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	-4	1055	-4	150	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCAGAAAGTATACAGTGG	-21	True	NA	NA	False	NA	NA	NA	56865192	56811989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
35880	chr9	-	3204	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	19	2	-2	-2	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	193	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCCCTCTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	57375322	57348611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
35881	chr16	-	3601	7	NIC	ENSMUSG00000050312.13	novel	3565	6	NA	NA	1	-1	combination_of_known_junctions	TRUE	canonical	1	1	junction_4	12.3917535302941	5	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGATGCCTTTTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	62607139	62552807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_62555782_62589969_62590092_62591020_62591176_62592061_62592100_62596650_62596747_62606150_62606261_62607033
35884	chr8	-	2666	11	NNC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	60.2100489951636	10	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTATATGTGCCGATTT	NA	False	NA	NA	False	NA	NA	NA	57003881	56984557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56994952_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003579
35885	chr11	-	3511	9	NNC	ENSMUSG00000001036.18	novel	4207	9	NA	NA	-40	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	108.074554706462	3	162	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATGTGGGTTTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	61437239	61408078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437053_61437127
35887	chrX	-	1265	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	54	0	combination_of_known_junctions	FALSE	canonical	3	1072	junction_10	144.485579365652	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72830449	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380
35888	chr13	+	4574	8	FSM	ENSMUSG00000038068.16	ENSMUST00000068891.12	4640	8	58	8	58	-8	multi-exon	FALSE	canonical	1	1	junction_6	2.49079939630896	29	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAACCAAACGTGTTAGC	NA	False	NA	NA	False	NA	NA	NA	47276189	47401459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_47276350_47360835_47361027_47373969_47374075_47382415_47382477_47390878_47391078_47393192_47393338_47396339_47396430_47397836
35889	chr16	+	1468	9	NNC	ENSMUSG00000022871.14	novel	1520	8	NA	NA	-358	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	192.651847577437	47	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGCTTCTTGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	22736725	22758497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22736792_22737218_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
35892	chr9	+	1399	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-148	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5999.94651828016	3	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTGTGTGACTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083022_64083382_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
35893	chr16	-	2804	5	NNC	ENSMUSG00000022814.7	novel	3283	5	NA	NA	5	-471	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	575.065431059806	2	122	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAGTACCCTTGGCCAA	8680	False	NA	NA	False	NA	NA	NA	33787368	33775634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779523_33780534_33780723_33781938_33782611_33787195
35894	chr2	-	3059	18	NNC	ENSMUSG00000006800.15	novel	4580	21	NA	NA	21758	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	215.17256292081	4	65	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTATCTTGGGACTTTTT	8514	False	NA	NA	False	NA	NA	NA	165974585	165915836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165916516_165919469_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507
35895	chr15	-	1968	12	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	158	-2	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	100.554249163292	411	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCAGTGTTTGATTTCT	9574	False	NA	NA	False	NA	NA	NA	98729177	98710679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98728767
35896	chr11	+	1428	12	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	18	819	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	460.989664823822	41	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCACCGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	109541764	109558621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544604_109544788_109550824_109550857_109550908_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
35897	chr6	-	2542	7	NNC	ENSMUSG00000029672.17	novel	1487	9	NA	NA	4533	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	202.755737006105	1	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTGACGTGTAGTAGTT	4336	False	NA	NA	False	NA	NA	NA	22339379	22306526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_22308538_22309325_22309453_22318932_22319018_22322288_22322348_22328555_22328678_22329577_22329608_22339271
35898	chr3	-	1332	11	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	5650	10838	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTATGATCCAAAATGGCC	NA	False	NA	NA	False	NA	NA	NA	32781112	32768707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32768766_32769563_32769663_32772179_32772273_32772514_32772624_32772715_32772804_32774047_32774112_32774334_32774448_32774581_32774665_32776768_32776865_32779395_32779481_32780668
35899	chr1	-	5285	7	ISM	ENSMUSG00000016200.15	ENSMUST00000215093.2	9274	9	48892	3789	48761	964	3prime_fragment	FALSE	canonical	2	2	junction_5	2.7938424357067	10	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCCAAGTCCTCAATGAT	NA	False	NA	NA	False	NA	NA	NA	192669191	192577329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_192579929_192584059_192584250_192612785_192613236_192615421_192615694_192662653_192662870_192665827_192667220_192669025
35900	chr9	-	1019	8	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACGCTCCTCTCTACCCG	NA	False	NA	NA	False	NA	NA	NA	64085792	64080695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080703_64082893_64083007_64083375_64083498_64084225_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
35901	chr7	-	1486	10	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-8	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	8266.83240126575	2	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGGGGGAGTCTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	126398321	126394415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396886_126397145_126397299_126398216
35902	chrX	-	951	1	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTCTTGAAGGTCCGGA	2481	False	NA	NA	False	NA	NA	NA	13070076	13069125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13069100_13070100
35904	chr1	+	1752	5	NNC	ENSMUSG00000008475.14	novel	1914	4	NA	NA	86	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	688.323461390065	43	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTCTTAATTGAATAC	NA	False	NA	NA	False	NA	NA	NA	152642378	152651331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_152642621_152644613_152644685_152647114_152647292_152650010_152650781_152650839
35905	chr4	-	3108	2	ISM	ENSMUSG00000040842.18	ENSMUST00000148204.8	3202	4	20945	12	20945	-12	3prime_fragment	FALSE	canonical	3	458	junction_1	0	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTCCTCATTTCTGGC	NA	False	NA	NA	False	NA	NA	NA	140846093	140840323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_140843176_140845837
35906	chrX	+	2656	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	10	0	-4	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	1	106	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5958	False	NA	NA	False	NA	NA	NA	73348613	73355468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
35907	chr13	+	3913	15	NNC	ENSMUSG00000114138.2	novel	528	3	NA	NA	543	75241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	53	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAAAGTTGGCATCCCCC	NA	False	NA	NA	False	NA	NA	NA	9734871	9814821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_9737021_9739098_9739285_9739487_9739760_9740480_9740553_9740940_9741149_9743467_9743585_9744304_9744383_9745164_9745223_9745776_9745865_9747681_9747772_9748662_9748742_9760181_9760343_9770807_9770966_9785364_9785505_9814764
35908	chr10	+	5018	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	13	29	13	-29	multi-exon	FALSE	canonical	3	746	junction_2	70.5	353	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTTAAGATGTGGCCT	7605	False	NA	NA	False	NA	NA	NA	11157086	11173767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_11157245_11165263_11167317_11170960
35909	chr11	-	2044	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	63	-3103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	987.347996461077	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGCAATTTTTTGGTAT	5264	False	NA	NA	False	NA	NA	NA	88846228	88817948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88818754_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88843231_88843381_88846119
35911	chr13	+	2029	9	Antisense	novelGene_ENSMUSG00000116016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCACAACCAGTCTCAGTC	NA	False	NA	NA	False	NA	NA	NA	111574543	111626356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589774_111589898_111590031_111603384_111603504_111623955_111624907_111626253
35912	chr5	-	2008	15	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	-60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	278.480104078096	12	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8398	False	NA	NA	False	NA	NA	NA	137305795	137293976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298325_137305685
35913	chr5	+	2324	7	NNC	ENSMUSG00000040584.9	novel	494	2	NA	NA	-81	-41	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	78.9460082728837	16	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAATAAGAGGATCTTATA	NA	False	NA	NA	False	NA	NA	NA	8783206	8798529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_8783506_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
35914	chr5	+	2649	16	NNC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	-11	-8	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	46.5873611854355	320	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAGAGGCCGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	24599382	24614935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605798_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
35915	chr6	+	4108	8	NNC	ENSMUSG00000001517.15	novel	4652	8	NA	NA	-2	-264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	67.0689562909636	62	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCTCGTACACAGCCTG	NA	False	NA	NA	False	NA	NA	NA	128342665	128352845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_128343164_128344249_128344402_128346256_128346449_128347919_128348049_128348930_128348976_128349496_128349567_128349739_128349970_128350053
35916	chr1	-	2585	17	NNC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-9	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.900550834255	1	86	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTTATTGAGTATTTAG	NA	False	NA	NA	False	NA	NA	NA	160898237	160869082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160869418_160871211_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896658_160896740_160897562
35918	chr1	-	2864	18	NNC	ENSMUSG00000003458.13	novel	3016	18	NA	NA	105	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	171.188659359858	15	46	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTACTTGTTGTTTG	9101	False	NA	NA	False	NA	NA	NA	171910257	171893588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897245_171897319_171897538_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
35919	chr13	+	1718	5	Intergenic	novelGene_1392	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	72.8903285765677	123	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	61919397	61935101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_61919514_61920220_61920316_61928416_61928544_61928736_61928798_61933782
35920	chr13	+	1662	7	Antisense	novelGene_ENSMUSG00000114027.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTTGAGTCATGGATCT	NA	False	NA	NA	False	NA	NA	NA	66397154	66411380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66398013_66399137_66399258_66400348_66400407_66401559_66401730_66403192_66403335_66408737_66408817_66411145
35921	chr10	+	2547	5	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	7	-5	intron_retention	FALSE	canonical	0	0	junction_2	44.4606567652796	321	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGCTTTTCTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	76869052	76886260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_76869182_76874183_76874414_76877649_76878809_76880594_76880737_76885373
35922	chrUn_JH584304v1	-	1007	1	Intergenic	novelGene_4596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACACTCCCACACCTGAG	NA	False	NA	NA	False	NA	NA	NA	47823	46816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_46800_47800
35923	chr12	+	2860	11	NIC	ENSMUSG00000021065.17	novel	2765	12	NA	NA	-58	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	30.4065782356384	104	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGAAGTTTCTGGAAT	NA	False	NA	NA	False	NA	NA	NA	77284840	77522763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_77284974_77324134_77324230_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
35924	chr15	-	2654	10	NIC	ENSMUSG00000022570.8	novel	1335	11	NA	NA	0	-1	intron_retention	FALSE	canonical	3	182	junction_9	91.671447686767	8	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGGACTCAGAAGCTGG	8932	False	NA	NA	False	NA	NA	NA	75801589	75796532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75800393_75800740_75800899_75801501
35925	chr7	+	1697	1	Intergenic	novelGene_2951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCCCAGAGCCTTAGCC	NA	False	NA	NA	False	NA	NA	NA	42912336	42914033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42912300_42914000
35927	chr10	-	3098	11	Antisense	novelGene_ENSMUSG00000040033.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	67	19	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCGAATTCAGGAAACACAA	NA	False	NA	NA	False	NA	NA	NA	128128721	128118980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128119033_128119103_128119183_128119349_128119450_128119550_128119687_128119793_128119830_128119979_128120061_128120814_128121029_128121134_128121322_128121527_128121585_128126368_128126900_128127096
35928	chr5	+	4546	25	NIC	ENSMUSG00000029004.16	novel	7252	26	NA	NA	17	-1053	combination_of_known_splicesites	FALSE	canonical	1	2	junction_16	8.03281032184046	6	39	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTCCACACCTCACACC	NA	False	NA	NA	False	NA	NA	NA	23639463	23706807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196_23698506_23701401_23701547_23701969_23702221_23702536_23702594_23702725_23703293_23704279_23704591_23705253_23705343_23705448_23705575_23705724_23705811_23706521
35929	chr13	+	2864	11	Antisense	novelGene_ENSMUSG00000034928.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	40	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAAGCCGCCGGCCGCGG	NA	False	NA	NA	False	NA	NA	NA	54828059	54841622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_54829624_54829745_54829844_54829922_54830046_54830137_54830232_54830394_54830515_54830601_54830768_54830857_54831030_54831407_54831578_54831774_54831900_54832150_54832301_54841540
35931	chr18	+	1619	8	NNC	ENSMUSG00000042705.10	novel	1610	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	627.647958001676	3048	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	NA	False	NA	NA	NA	47091927	47221062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47153773_47153828_47219318_47219379_47220094
35932	chr5	-	1590	4	ISM	ENSMUSG00000029623.15	ENSMUST00000123111.8	1017	5	1032	-424	-38	424	3prime_fragment	FALSE	canonical	3	462	junction_1	14.7044966667418	5	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTAATTCCTTGTTTGGCA	NA	False	NA	NA	False	NA	NA	NA	145072474	145066469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874
35933	chr5	+	1737	14	NIC	ENSMUSG00000059447.14	novel	2033	16	NA	NA	-3	-2	combination_of_known_junctions	FALSE	canonical	1	6	junction_6	152.96907681469	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGACTGTTCGTAGTC	NA	False	NA	NA	False	NA	NA	NA	30360252	30389578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
35935	chr12	+	2316	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	-38	221	-38	0	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	2	93	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGGTGCCTGTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	21336320	21364836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
35937	chr8	+	1844	8	FSM	ENSMUSG00000031585.14	ENSMUST00000171010.8	1664	8	-184	4	22	-4	multi-exon	FALSE	canonical	2	96	junction_1	434.890697034723	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGCTTTGTTTTAAA	5347	False	NA	NA	False	NA	NA	NA	34222182	34267197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_34222544_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
35938	chr17	-	4487	2	Genic_Genomic	ENSMUSG00000003929.12	novel	6639	4	NA	NA	7	-17297	multi-exon	FALSE	canonical	0	0	junction_1	0	3	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTCTTCTTTAATTAAA	NA	False	NA	NA	False	NA	NA	NA	33577835	33571580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_33572635_33574402
35939	chr6	-	4232	20	NNC	ENSMUSG00000030064.17	novel	4311	23	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_19	20.6139828293477	57	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACACGTGTTTGGATGC	7420	False	NA	NA	False	NA	NA	NA	97373691	97263832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97300615_97300703_97302393_97302452_97305193_97305260_97306441_97306526_97330142_97330166_97330965_97331023_97373153_97373239_97373639
35940	chrX	+	2685	1	Genic_Genomic	ENSMUSG00000031149.8_ENSMUSG00000109493.2	novel	NA	NA	NA	NA	-72	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	63	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTCAAGCTAGTTTGGC	1098	False	NA	NA	False	NA	NA	NA	7594605	7597290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_7594600_7597300
35941	chrX	+	1032	10	NNC	ENSMUSG00000031201.18	novel	2473	10	NA	NA	0	1670	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	519.51988756952	1317	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAAGATGAAATAAACTCC	NA	False	NA	NA	False	NA	NA	NA	74460315	74499277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74460448_74461997_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74499157
35943	chr11	-	2943	11	FSM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	105	2	105	-2	multi-exon	FALSE	canonical	3	31	junction_9	5.98748695196908	88	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGCCTGCTTGGTGTA	5464	False	NA	NA	False	NA	NA	NA	97944183	97927450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97928897_97930444_97930583_97930923_97930976_97931247_97931346_97931964_97932027_97932129_97932203_97932292_97932406_97933354_97933446_97933582_97933681_97934305_97934613_97943718
35944	chr1	-	1711	15	NIC	ENSMUSG00000026209.16	novel	1571	15	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_14	246.159698039252	72	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	75293983	75285208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293788
35945	chr7	+	4843	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	3	-657	3	657	multi-exon	FALSE	canonical	3	81	junction_1	0	310	99	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCCATATCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	79882615	79892466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79882954_79887961
35946	chr7	+	4206	2	ISM	ENSMUSG00000030523.19	ENSMUST00000206453.2	366	4	3355	-541	3355	3	3prime_fragment	FALSE	canonical	3	892	junction_1	0	15	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTGAGTTTTCAGACTAT	NA	False	NA	NA	False	NA	NA	NA	63856164	63861178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_63859778_63860585
35947	chr15	-	3222	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	73	4	-10	-2	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	1	192	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTTTGAGCTATAATGT	NA	False	NA	NA	False	NA	NA	NA	83033512	83010180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
35950	chr2	-	1885	9	NNC	ENSMUSG00000017664.17	novel	2008	10	NA	NA	15	0	intron_retention	FALSE	non_canonical	0	0	junction_5	92.3971556650961	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5720	False	NA	NA	False	NA	NA	NA	165129729	165118473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123990_165124065_165124702_165124854_165125168_165125524_165129703
35951	chr1	-	3113	7	ISM	ENSMUSG00000055067.16	ENSMUST00000068437.13	3360	9	154438	58	-105057	47	3prime_fragment	FALSE	canonical	3	343	junction_1	12.7758452644912	1311	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCCTGCTTCTCTATCTT	NA	False	NA	NA	False	NA	NA	NA	178921967	178782668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899
35952	chr15	+	3753	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	25	6	2	-6	multi-exon	FALSE	canonical	3	64	junction_4	7.38052994182818	292	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCGGCTGTGCTTTGAT	NA	False	NA	NA	False	NA	NA	NA	84116268	84199883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
35953	chr5	-	1881	5	NIC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	-2	37	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	109.142968165613	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAAATTGTATTTTAAAT	5470	False	NA	NA	False	NA	NA	NA	150589044	150566427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_150566781_150570924_150571014_150574079_150574205_150584743_150585979_150588965
35954	chr10	+	2363	4	FSM	ENSMUSG00000061371.8	ENSMUST00000210325.2	2360	4	0	-3	0	0	multi-exon	FALSE	canonical	3	37	junction_2	1.24721912892465	94	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTTATCTATATTATCA	NA	False	NA	NA	False	NA	NA	NA	81883956	81897418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350
35955	chr6	-	2205	14	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	0	31	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	256.271329030074	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGAAAACTAGTCTAGAC	NA	False	NA	NA	False	NA	NA	NA	148113520	148082776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104624_148106273_148106383_148108030_148108174_148113467
35957	chr13	-	3332	2	FSM	ENSMUSG00000048376.7	ENSMUST00000059193.7	3336	2	13	-9	13	9	multi-exon	FALSE	canonical	3	48	junction_1	0	102	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTCTGGAATAGATT	NA	False	NA	NA	False	NA	NA	NA	95754982	95738301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_95741446_95754794
35960	chr5	-	3774	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	6	10	6	-10	multi-exon	FALSE	canonical	3	72	junction_3	7.3	109	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAGTCCCAATTTAATAG	7632	False	NA	NA	False	NA	NA	NA	35732408	35713556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
35962	chr2	-	2241	8	FSM	ENSMUSG00000052406.15	ENSMUST00000064244.11	2281	8	40	0	-22	0	multi-exon	FALSE	canonical	3	152	junction_5	23.9344342497821	373	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	False	NA	NA	False	NA	NA	NA	26854358	26843574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
35963	chr2	+	3782	6	ISM	ENSMUSG00000026803.18	ENSMUST00000100237.4	4160	12	1	11809	1	-5749	intron_retention	FALSE	canonical	3	53	junction_1	11.1713920350152	5	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCCCAAAGTCCGATTC	NA	False	NA	NA	False	NA	NA	NA	28950274	28965859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28950316_28954630_28955921_28957014_28957242_28959903_28960090_28961309_28961389_28963900
35964	chr17	-	2813	5	NNC	ENSMUSG00000095325.4	novel	754	5	NA	NA	13	-11	intron_retention	FALSE	canonical	0	0	junction_1	70.5916956872407	120	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATACTTCAGAAAGACA	NA	False	NA	NA	False	NA	NA	NA	33110551	33098212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33099382_33101820_33103140_33104676_33104738_33104930_33105058_33110414
35965	chr10	+	3181	5	NIC	ENSMUSG00000019808.9	novel	1466	6	NA	NA	328	604	intron_retention	FALSE	canonical	3	637	junction_3	67.9977021670586	16	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTAAAGAGTATCTAGA	NA	False	NA	NA	False	NA	NA	NA	13428965	13439724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_13429106_13432595_13432701_13435857_13437555_13438380_13438454_13438558
35966	chr11	+	2066	16	FSM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	-3	5	3	-5	multi-exon	FALSE	canonical	3	28	junction_5	25.2651714597168	537	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGACATTGAGTGCATTAT	8657	False	NA	NA	False	NA	NA	NA	83363914	83397564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
35969	chr4	-	1841	15	Fusion	ENSMUSG00000028393.11_ENSMUSG00000028394.10	novel	1247	12	NA	NA	-9	-4	multi-exon	FALSE	canonical	0	0	junction_11	204.422244586133	1145	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGCCCTGTGCCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	62443284	62427409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62441971_62442348_62442554_62442674_62442986_62443073_62443167
35970	chr17	-	2977	15	NNC	ENSMUSG00000005823.10	novel	2405	17	NA	NA	1340	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	95.2556442165085	2	106	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAGTAAACAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	57553323	57541977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57542367_57542924_57543048_57543155_57543240_57543373_57543424_57543700_57543741_57543870_57544002_57544205_57544324_57544423_57544921_57545029_57545164_57549729_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57552471
35971	chr13	-	1741	13	NNC	ENSMUSG00000021546.19	novel	2653	15	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	2937.90730036799	1	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTGGTGGTCTTTTTT	5148	False	NA	NA	False	NA	NA	NA	58549933	58539765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543466_58545553_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
35973	chr2	+	1689	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	223	-1	223	1	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	2	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCTTTGTGTGGTTATT	NA	False	NA	NA	False	NA	NA	NA	143757462	143785245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
35974	chr2	-	2467	5	NNC	ENSMUSG00000027551.16	novel	2438	6	NA	NA	35	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	255.81438583473	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCGTATAGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	168797472	168767290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168768854_168777130_168777244_168782695_168782819_168793464_168793699_168797038
35975	chr14	-	2560	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	-25	-1234	-1	-20	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	1	149	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACCTGTTTAAATAT	8759	False	NA	NA	False	NA	NA	NA	52341451	52311021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
35976	chr7	-	3066	6	NNC	ENSMUSG00000030846.16	novel	2319	13	NA	NA	23	-858	intron_retention	FALSE	canonical	0	0	junction_3	98.5563798036434	1	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTAAAAGTACACAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	128063024	128047393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_128049933_128050065_128050121_128050344_128050444_128053124_128053225_128056659_128056757_128062848
35977	chr18	-	1928	5	NIC	ENSMUSG00000024487.6	novel	3328	6	NA	NA	-15	-1533	combination_of_known_junctions	FALSE	canonical	1	5	junction_4	123.406847459936	24	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTGTGAAGTTTACTT	NA	False	NA	NA	False	NA	NA	NA	40352411	40338481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351956
35978	chr5	-	3736	12	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23541	45630	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	247	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256855	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228887_108229000_108229073_108234847_108234951_108235156_108235255_108235795_108235949_108239923_108240023_108241202_108241259_108248669_108248857_108251891_108252017_108252269_108252382_108254448
35979	chr13	+	2172	5	NNC	ENSMUSG00000021488.9	novel	9905	21	NA	NA	-286	-411	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	105.44311262477	36	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCCAGAGTGCTCGGTTT	NA	False	NA	NA	False	NA	NA	NA	55358261	55388248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55358348_55361016_55361131_55361873_55361964_55381707_55381844_55386502
35980	chr5	+	1352	7	NNC	ENSMUSG00000029304.15	novel	1456	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2907.88203279752	5	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGTCTGGTGGTGTCAA	NA	False	NA	NA	False	NA	NA	NA	104583007	104588914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583115_104584240_104584309_104584406_104584443_104585517_104585602_104586091_104586134_104587130_104587413_104588181
35981	chr1	-	867	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	55	-31	55	31	mono-exon	FALSE	NA	NA	NA	NA	NA	20	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837350	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837400
35983	chr6	-	5302	1	FSM	ENSMUSG00000029817.12	ENSMUST00000204013.2	3788	1	1805	-3319	1785	3319	mono-exon	FALSE	NA	NA	NA	NA	NA	238	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATCCCAAGCCCTAAACA	6398	False	NA	NA	False	NA	NA	NA	49239159	49233857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_49233900_49239200
35984	chr4	+	1985	9	NNC	ENSMUSG00000078502.11	novel	1221	3	NA	NA	-72184	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.4919855325208	1	115	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	3117	False	NA	NA	False	NA	NA	NA	145239551	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145239640_145295273_145295395_145299195_145299462_145322279_145322351_145343687_145343746_145347127_145347255_145348721_145348860_145350107_145350921_145351607
35985	chr10	-	2423	10	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	436.593378073669	1	97	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAAACAGAAACTTAAGT	5280	False	NA	NA	False	NA	NA	NA	62322502	62291063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62291511_62291587_62292638_62294702_62294846_62299469_62299532_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
35986	chr8	+	1404	7	NIC	ENSMUSG00000031585.14	novel	1634	8	NA	NA	52	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	528.464021691375	8	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGCTTTGTTTTAAA	5077	False	NA	NA	False	NA	NA	NA	34221912	34267197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34252037_34252132_34265971_34266088_34266480
35987	chrX	+	2132	3	Antisense	novelGene_ENSMUSG00000034403.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	221	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGCACTAGGGCAGGCG	NA	False	NA	NA	False	NA	NA	NA	98509347	98514321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_98511191_98511730_98511921_98514222
35988	chr5	+	1679	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	55	533	55	-533	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	3	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAATGTTGTTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45650770	45669500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
35990	chr4	+	4047	12	NIC	ENSMUSG00000028522.17	novel	4752	13	NA	NA	53	169	intron_retention	FALSE	canonical	3	89	junction_1	17.9305363062962	2	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTAACTGCACCTTCTC	520	False	NA	NA	False	NA	NA	NA	102976659	103020189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
35991	chr4	-	4038	17	ISM	ENSMUSG00000040296.16	ENSMUST00000037907.13	3874	18	4472	-428	4344	428	3prime_fragment	FALSE	canonical	0	0	junction_16	34.3987985800376	3	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACTGCAGAGATCATCTG	4449	False	NA	NA	False	NA	NA	NA	40235356	40204420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398_40220504_40222034_40222198_40223797_40224057_40225039_40225194_40225597_40225706_40226596_40226720_40227965_40228114_40229494_40229677_40235247
35992	chr8	-	2039	12	NNC	ENSMUSG00000040263.17	novel	2078	12	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	53.7922234694303	541	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTTTCTTTCTTCTACA	433	False	NA	NA	False	NA	NA	NA	122556311	122523070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548041_122548098_122548520_122548613_122556120
35993	chr3	-	2590	13	NNC	ENSMUSG00000027809.15	novel	2377	13	NA	NA	-57	-8	intron_retention	FALSE	canonical	0	0	junction_12	30.1619471446317	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAACGAGAGCATTTA	3651	False	NA	NA	False	NA	NA	NA	79536103	79511117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535521
35994	chr2	-	2616	18	NNC	ENSMUSG00000039195.5	novel	2618	2	NA	NA	3563	14019	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	31	4	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACGGTGACCGGACCGGG	NA	False	NA	NA	False	NA	NA	NA	32268311	32253089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32253169_32253814_32253990_32254228_32254344_32255811_32255890_32257317_32257543_32260041_32260136_32260251_32260355_32260873_32261126_32261264_32261420_32261646_32261769_32262308_32262504_32264349_32264479_32265496_32265583_32266018_32266133_32266275_32266437_32267299_32267374_32267519_32267640_32267972
35995	chr15	+	4753	31	FSM	ENSMUSG00000022488.10	ENSMUST00000047405.9	4725	31	-28	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	3.63027394130097	31	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCGTGGATGTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	103362225	103407237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_103362409_103363397_103363509_103364266_103364360_103368611_103368669_103369965_103370109_103370928_103371020_103371106_103371245_103372792_103372842_103372932_103373090_103379655_103379713_103379953_103380051_103381194_103381305_103381465_103381599_103381943_103382026_103382226_103382286_103382479_103382626_103384028_103384162_103384404_103384525_103386704_103386851_103387150_103387283_103390386_103390606_103391941_103392073_103394758_103394857_103394972_103395067_103395219_103395303_103395535_103395617_103398418_103398513_103399337_103399455_103399892_103400003_103401647_103401738_103405838
35996	chr4	-	2712	19	Genic_Genomic	ENSMUSG00000102912.2	novel	2288	1	NA	NA	-5109	2987	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	29	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGACACCACAGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	108487522	108477138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_108477269_108478706_108478790_108480645_108480792_108481639_108481742_108482039_108482729_108482849_108483010_108483175_108483349_108483495_108483573_108483675_108483786_108483868_108484000_108484242_108484315_108484487_108484614_108485025_108485143_108485227_108485398_108485777_108485907_108486771_108486829_108486912_108487024_108487281_108487361_108487472
35997	chr1	+	1738	2	ISM	ENSMUSG00000100037.2	ENSMUST00000191034.2	598	3	-4	36134	-4	-36134	5prime_fragment	FALSE	canonical	3	31	junction_1	0	1	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCAGTAGCTCATGAACA	NA	False	NA	NA	False	NA	NA	NA	131890687	131906090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_131890791_131904455
35998	chr5	+	1513	6	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	-12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	246.673873768585	1	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATGTATGGTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	143389580	143407654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555_143407114_143407439
35999	chr4	+	2295	2	ISM	ENSMUSG00000028710.19	ENSMUST00000175725.8	996	9	11306	-658	-1335	48	3prime_fragment	FALSE	canonical	3	435	junction_1	0	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAATCTAGATTTGCATG	3926	False	NA	NA	False	NA	NA	NA	115656245	115669116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_115657623_115668198
36000	chr17	-	3708	31	NNC	ENSMUSG00000024242.16	novel	4088	33	NA	NA	-12855	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	73.6194494229163	121	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTGCGTAGTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	80971434	80887945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80937843_80937903_80944148_80944228_80951560_80951654_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961836_80961897_80963285_80963351_80971420
36001	chr15	+	908	7	Antisense	novelGene_ENSMUSG00002075255.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGGAGCAGAGCACAGTT	NA	False	NA	NA	False	NA	NA	NA	79961996	79965233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79962092_79962179_79962308_79962531_79962633_79962910_79963010_79963890_79964051_79964565_79964754_79965096
36002	chr1	-	344	1	Intergenic	novelGene_484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATTATCTAGACTG	NA	False	NA	NA	False	NA	NA	NA	171971813	171971469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_171971500_171971800
36003	chr19	+	1378	9	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	1174	302	-1	-302	3prime_fragment	FALSE	canonical	3	8704	junction_3	383.621700865579	1	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAACTTTTTCCTGTCCTG	2017	False	NA	NA	False	NA	NA	NA	8945578	8955541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
36006	chr12	+	2074	7	NNC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	5	227	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	110.413867889057	5	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGACTTGAACAGTTGGA	NA	False	NA	NA	False	NA	NA	NA	8258154	8335170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8258205_8270599_8270756_8288442_8288616_8318363_8318599_8325807_8325891_8330721_8330828_8333899
36007	chr2	-	1426	12	NNC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	-7	1	intron_retention	FALSE	non_canonical	0	0	junction_9	232.826150869969	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATCTGGTTTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	130126361	130121231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125735_130125923_130125957_130126090_130126169_130126301
36008	chr10	-	3134	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	0	1532	0	-40	multi-exon	FALSE	canonical	3	255	junction_15	80.7788802843912	1	112	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATAAATCCCTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	123032858	122949172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
36009	chr11	+	1738	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	70	292	-22	-292	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	77	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAACCTAAATTAAAAATG	3061	False	NA	NA	False	NA	NA	NA	75623764	75656379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
36010	chr11	+	1267	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-31	multi-exon	FALSE	non_canonical	0	0	junction_2	980	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120653941_120654235
36011	chr1	-	3022	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	55	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	75	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	NA	False	NA	NA	False	NA	NA	NA	183126902	183107681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
36013	chr6	+	2225	12	NIC	ENSMUSG00000034930.17	novel	653	6	NA	NA	-155	-43	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	15.2196045821291	136	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTGATCCCAATATCAACC	1495	False	NA	NA	False	NA	NA	NA	83119217	83129517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83119543_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
36015	chr13	-	4439	1	Antisense	novelGene_ENSMUSG00000113253.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	81	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCCTTAACTCCTTTTCA	9955	False	NA	NA	False	NA	NA	NA	66391919	66387480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_66387500_66391900
36017	chr19	+	1412	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	155	297	155	-297	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	4	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	998	False	NA	NA	False	NA	NA	NA	8944559	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
36018	chr6	+	3389	27	NNC	ENSMUSG00000001376.18	novel	3788	28	NA	NA	5	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	45.007034295704	1	99	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTACACTCTAAAATTACC	11	True	NA	NA	False	NA	NA	NA	3498430	3603297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551107_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594906_3600127_3600318_3602659
36019	chr14	-	2190	13	NIC	ENSMUSG00000042354.8	novel	1765	15	NA	NA	-11	-5	intron_retention	FALSE	canonical	3	37	junction_8	252.191547021086	1	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCATGTGTTTAAGATTT	NA	False	NA	NA	False	NA	NA	NA	30740957	30734395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735753_30736009_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
36020	chr19	-	1375	9	Antisense	novelGene_ENSMUSG00000071644.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTGGGGCTGTCGGTGC	NA	False	NA	NA	False	NA	NA	NA	8955541	8944559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8944589_8945578_8945737_8946523_8946589_8946726_8946866_8947202_8947349_8949867_8950000_8950266_8950478_8954679_8954852_8955218
36021	chr14	-	1594	10	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1488.47558940243	2	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATACTAATTAAAAAAACGAT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733181_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63745755_63745831_63746154
36023	chr4	+	2201	17	NNC	ENSMUSG00000029034.10	novel	481	4	NA	NA	271	136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	315.26109590901	1	55	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	NA	False	NA	NA	False	NA	NA	NA	155954342	155973326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954591_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970608_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
36024	chr10	-	2983	21	FSM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	37	0	-26	0	multi-exon	FALSE	canonical	3	74	junction_1	12.9324205004322	113	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	83484565	83435896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
36025	chr5	-	1669	5	FSM	ENSMUSG00000029433.17	ENSMUST00000139398.8	1663	5	-10	4	-9	-4	multi-exon	FALSE	canonical	3	603	junction_2	57.6649807075317	2250	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGACCAGTTTTCAGAAT	8946	False	NA	NA	False	NA	NA	NA	123662215	123649771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123650771_123655799_123656129_123658103_123658236_123661317_123661445_123662133
36026	chr7	+	1946	10	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	15	157	intron_retention	FALSE	non_canonical	0	0	junction_1	157.516920509873	11	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAAATCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	139717491	139730517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139718297_139720105_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
36027	chr13	+	2007	8	NNC	ENSMUSG00000021420.14	novel	726	5	NA	NA	1815	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116.778003240406	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	36315697	36721567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_36316129_36388491_36389125_36416104_36416265_36423268_36423314_36430345_36430478_36525919_36526081_36594061_36594214_36721274
36028	chr11	-	1931	8	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	349.707107769473	17	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	NA	False	NA	NA	NA	120534552	120530241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120531175_120531875_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
36029	chr10	-	2490	10	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	490.611812553758	1	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAACTTAAGTTTGTAGT	5255	False	NA	NA	False	NA	NA	NA	62322527	62291056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62291361_62291406_62292638_62294702_62294846_62299469_62299532_62300410_62300518_62304064_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
36031	chr15	-	2957	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	62	6	62	-6	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	491	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGAGTTGTGTATGT	NA	False	NA	NA	False	NA	NA	NA	94487698	94475837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
36032	chr6	-	3416	24	Antisense	novelGene_ENSMUSG00000103899.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	173	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCGCAAGCGTGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	28888816	28480357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_28480641_28512832_28512984_28520140_28520262_28523723_28523805_28526051_28526200_28526905_28526998_28527573_28527734_28528910_28529017_28531405_28531501_28545489_28545595_28626095_28626188_28668554_28668658_28707032_28707142_28724905_28724976_28745176_28745325_28795826_28795926_28874852_28875047_28880193_28880335_28883253_28883389_28884202_28884257_28884954_28885082_28886441_28886616_28888076_28888120_28888231
36033	chr13	+	1835	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	2	12	0	-12	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	77	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCCATGTGGGCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	99481295	99552058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
36034	chr3	-	1395	6	NIC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	70	junction_5	718.003509740725	495	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7190	False	NA	NA	False	NA	NA	NA	89906004	89902759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905411_89905834
36035	chr3	+	2772	8	NIC	ENSMUSG00000027680.16	novel	2127	15	NA	NA	2	2584	intron_retention	FALSE	canonical	3	1060	junction_6	94.8453090725167	17	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAAACTTTGTTAAAAG	4851	False	NA	NA	False	NA	NA	NA	34074248	34105848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223
36036	chr14	-	1879	12	Antisense	novelGene_ENSMUSG00000021866.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGATATGAAGGCATCCC	NA	False	NA	NA	False	NA	NA	NA	25887220	25873129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_25873321_25874365_25874455_25874632_25874727_25875092_25875201_25877076_25877178_25877532_25877606_25877767_25877827_25879502_25879599_25883336_25883435_25884349_25884409_25884564_25884687_25886431
36038	chr9	+	2414	13	FSM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	-3	398	-3	-397	multi-exon	FALSE	canonical	3	55	junction_5	89.4905333292609	230	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGGGATCCCATTGTTT	6183	False	NA	NA	False	NA	NA	NA	65201573	65237542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
36039	chr3	+	2131	8	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	11	17	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	42.6375325701836	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTGTAAAGTTTCAATTT	NA	False	NA	NA	False	NA	NA	NA	106455157	106482178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_106455237_106459471_106459597_106462479_106462625_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
36041	chr10	-	1849	9	ISM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	58	9082	4	-7013	5prime_fragment	FALSE	canonical	3	109	junction_1	17.4355957741627	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACACAGAGAAACCCCGTC	5720	False	NA	NA	False	NA	NA	NA	4382330	4360996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
36042	chr13	-	1629	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	1	-513	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	4	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGTAATGGCTAAAATCA	NA	False	NA	NA	False	NA	NA	NA	34314336	34311243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311959_34311997_34312515_34312854_34312966_34313228_34313338_34314159
36043	chr14	-	2867	1	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	1815	-111	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	63732773	63729906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63729900_63732800
36044	chr17	+	1303	5	NNC	ENSMUSG00000046711.17	novel	1030	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2226.4405449057	286	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTCTGGTGTAAGGA	NA	False	NA	NA	False	NA	NA	NA	27775596	27782641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780451_27781736
36045	chr14	+	2286	10	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	5	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	24.6666666666667	24	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAGAGCAGTGTACGT	NA	False	NA	NA	False	NA	NA	NA	70004938	70021853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015160_70015265_70017952_70018023_70019680_70019962_70020035_70020336_70021138
36046	chr17	+	2177	16	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	37	85	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	622.78494950772	2	71	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACACAGTAAATAGACACAC	NA	False	NA	NA	False	NA	NA	NA	71923246	71964872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937281_71938999_71939144_71943454_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
36047	chr6	-	2790	6	NIC	ENSMUSG00000004267.17	novel	1640	10	NA	NA	1320	1	intron_retention	FALSE	canonical	3	37	junction_4	8.7086164228309	5	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCCTTGTCTGAGGACT	5539	False	NA	NA	False	NA	NA	NA	124743973	124737326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740888_124743067_124743291_124743493
36048	chr11	+	3128	2	ISM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	492	3	414	0	3prime_fragment	FALSE	canonical	3	91	junction_1	0	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTGTGTGTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	49141830	49153854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_49142502_49151397
36049	chr16	+	3092	16	NNC	ENSMUSG00000022701.19	novel	3745	16	NA	NA	-14	-617	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_10	17.6199382014303	65	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGCCTGGACTTACG	NA	False	NA	NA	False	NA	NA	NA	43710288	43784060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765184_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
36050	chr13	+	2555	14	NNC	ENSMUSG00000062822.9	novel	2795	13	NA	NA	57	-19	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	45.8870493905976	1	86	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTTTGAAATTTTG	NA	False	NA	NA	False	NA	NA	NA	119599376	119622634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119610648_119610731_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
36051	chr1	-	2275	15	FSM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	0	11	0	-7	multi-exon	FALSE	canonical	3	61	junction_5	44.2795502622663	60	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATCCATGGTTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	36722264	36601783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
36052	chr11	+	1651	8	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2079.42318336365	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	95557834	95571599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519_95570625_95570720
36053	chr6	-	3240	15	FSM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	29	-587	-5	587	multi-exon	FALSE	canonical	2	55	junction_12	11.4653426304081	171	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAGATCACAAGACAAC	5805	False	NA	NA	False	NA	NA	NA	34887782	34856773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
36054	chr4	-	1657	17	Antisense	novelGene_ENSMUSG00000076271.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.484122918275927	23	8	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGAAACACCGCCTGCCG	NA	False	NA	NA	False	NA	NA	NA	124626216	124608646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_124608783_124609060_124609110_124609444_124609497_124609601_124609707_124610241_124610317_124612120_124612211_124615814_124615898_124616668_124616809_124617462_124617531_124618549_124618628_124618870_124618974_124620769_124620836_124621861_124622010_124622141_124622222_124623250_124623343_124625163_124625218_124625978
36055	chr5	+	1647	1	FSM	ENSMUSG00000082645.4	ENSMUST00000120264.4	539	1	-972	-136	-972	136	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATACATGGAGAGACCC	NA	False	NA	NA	False	NA	NA	NA	122390092	122391739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122390100_122391700
36056	chr5	+	1142	5	Antisense	novelGene_ENSMUSG00000038593.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCGCCGGGGAGCTAGGC	181	False	NA	NA	False	NA	NA	NA	122392140	122402447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_122392647_122395532_122395687_122396899_122397028_122399468_122399606_122402230
36057	chr2	-	1782	1	NIC	ENSMUSG00000027341.11	novel	1612	4	NA	NA	-5	-141	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGCCAGCACAGACGATG	4903	False	NA	NA	False	NA	NA	NA	132089694	132087912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132087900_132089700
36058	chr5	+	3339	18	NNC	ENSMUSG00000036435.14	novel	3272	18	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	52.6420963813058	3	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGATAATATTCTTAAG	NA	False	NA	NA	False	NA	NA	NA	76677170	76718134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685738_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
36059	chr15	+	2594	8	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-56	-3	intron_retention	FALSE	canonical	3	245	junction_2	19.8812802938455	41	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACCTTGGGATCCTGGC	4770	False	NA	NA	False	NA	NA	NA	76215487	76219095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216832_76216909_76217012_76217102_76218091_76218213_76218405_76218489_76218661_76218781
36060	chr18	+	2686	4	NNC	ENSMUSG00000024521.9	novel	2727	3	NA	NA	119	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	53.2687108493866	3	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAAGTAACTATTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	66591782	66598606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_66591884_66593913_66594070_66595901_66596065_66596340
36062	chr9	+	1306	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	8118.1127938292	3	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082529_64082865_64083005_64083373_64083492_64084247_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
36064	chr18	-	4921	14	NNC	ENSMUSG00000052026.9	novel	3366	14	NA	NA	94	-3	intron_retention	FALSE	canonical	1	1	junction_8	5.90155931655896	56	94	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTTTACCTGACTCTGC	NA	False	NA	NA	False	NA	NA	NA	61147184	61128454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61129904_61133493_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135511_61136312_61136438_61136558_61136639_61136804_61136973_61137460_61137596_61138783_61140682_61140787_61140920_61142493_61142678_61147048
36065	chr4	-	2599	4	FSM	ENSMUSG00000028992.14	ENSMUST00000119921.8	2657	4	56	2	17	-2	multi-exon	FALSE	canonical	3	41	junction_1	4.98887651569859	825	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCAAGGACGACTACCCT	1704	False	NA	NA	False	NA	NA	NA	149569603	149552030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_149554240_149557741_149557926_149558884_149559053_149569565
36066	chr13	+	1828	3	NNC	ENSMUSG00000071180.6	novel	1918	3	NA	NA	13	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	95.5	19	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAAGAGGTCCTGAGTT	NA	False	NA	NA	False	NA	NA	NA	108182957	108185699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_108183103_108183973_108184280_108184322
36067	chr10	+	2158	13	NNC	ENSMUSG00000020156.17	novel	2640	14	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	1	19	junction_12	165.637384233015	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATAGTCATTGCA	8464	False	NA	NA	False	NA	NA	NA	80062513	80079735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80062539_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80076975_80079504
36068	chr3	+	2055	7	NNC	ENSMUSG00000004897.17	novel	2245	6	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1099.60593951753	1461	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	87813667	87823439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_87813785_87813934_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
36070	chr7	-	1586	12	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-53	-15	combination_of_known_junctions	FALSE	canonical	3	461	junction_2	565.94251087883	61	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGTAATGTTTACTT	NA	False	NA	NA	False	NA	NA	NA	89629820	89603882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
36071	chr13	+	1904	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	-49	-800	-7	-13	multi-exon	FALSE	canonical	3	111	junction_4	292.63455772516	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGCATATATTAGACCAG	NA	False	NA	NA	False	NA	NA	NA	85337546	85361829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
36073	chr3	-	1232	5	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	107	-10	intron_retention	FALSE	canonical	3	3673	junction_1	2734.43754499897	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCGTTTGCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	86049902	86045256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
36074	chr2	-	1106	10	Antisense	novelGene_ENSMUSG00000005881.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCACCTAGAGCATGTCT	NA	False	NA	NA	False	NA	NA	NA	155860193	155850490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_155850572_155850779_155850899_155852358_155852452_155853017_155853184_155853266_155853340_155858609_155858721_155858806_155858872_155859497_155859635_155859714_155859770_155859987
36075	chr5	+	826	2	ISM	ENSMUSG00000000916.16	ENSMUST00000127746.2	415	3	-4	498	-4	-498	5prime_fragment	FALSE	canonical	3	290	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTCGGTCTTTAGAGACA	NA	False	NA	NA	False	NA	NA	NA	135398819	135399759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135398931_135399044
36077	chr15	-	3468	14	FSM	ENSMUSG00000023055.11	ENSMUST00000171838.2	2968	14	42	-542	42	-60	multi-exon	FALSE	canonical	3	88	junction_13	14.4115338424578	11	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGTACACACACACACACA	NA	False	NA	NA	False	NA	NA	NA	102630524	102615477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
36078	chr6	+	1566	7	Antisense	novelGene_ENSMUSG00000030357.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	454	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATAGCCTTCACCCCG	7165	False	NA	NA	False	NA	NA	NA	128407065	128411740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_128407846_128409386_128409624_128410067_128410254_128410487_128410575_128410667_128410765_128411271_128411425_128411714
36079	chr7	-	2378	17	NNC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	5207	-1247	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_9	52.3936049890633	1	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGGAGGGTTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	29974614	29950493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962201_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526
36080	chr4	+	2541	13	FSM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	0	2	0	-2	multi-exon	TRUE	canonical	3	99	junction_1	27.9607860325055	310	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	115696394	115736445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
36082	chr13	+	1755	4	FSM	ENSMUSG00000062382.10_ENSMUSG00000076033.3	ENSMUST00000221435.2	491	4	-1	-1263	-1	612	multi-exon	FALSE	canonical	1	5	junction_3	41.4085337420521	2	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAATTATGAGTAAAAT	1246	False	NA	NA	False	NA	NA	NA	74547811	74556077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74547912_74553897_74554023_74554221_74554283_74554608
36083	chr10	-	3727	31	NNC	ENSMUSG00000025366.9	novel	3981	31	NA	NA	-56	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	45.8410902526931	294	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGCTTCATGAACTTGCA	8262	False	NA	NA	False	NA	NA	NA	128361796	128346116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128348195_128348334_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357510_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
36084	chr16	+	1568	8	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_3	208.929145298357	1593	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGGCTTTTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	48104094	48114601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48108984_48109070_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
36085	chr9	+	2491	14	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	871.25381324881	7	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGTCTCAGGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	21279249	21316658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298999_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306757_21307315_21307428_21307512_21307617_21314507_21314798_21315355_21315488_21315991
36086	chr2	-	1239	8	FSM	ENSMUSG00000027404.17	ENSMUST00000147570.3	1133	8	37	-143	-32	-9	multi-exon	FALSE	canonical	3	49	junction_6	1649.031750539	30	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTGATATATTCATTT	NA	False	NA	NA	False	NA	NA	NA	130021286	130013563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018548_130018673_130018934_130019087_130021153
36087	chr18	-	3205	9	NNC	ENSMUSG00000006740.15	novel	6032	26	NA	NA	1330	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	519.44874626858	2	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTGAAATGTAATGAC	9636	False	NA	NA	False	NA	NA	NA	6213210	6201035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6202200_6202364_6203708_6208186_6208331_6208999_6209217_6210699_6210781_6211023_6211096_6211194_6211253_6212516_6212619_6213186
36089	chr2	+	2114	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	22	37	22	-37	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	1554	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTACTTAGAAAATTGAAATA	NA	False	NA	NA	False	NA	NA	NA	172282497	172311791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
36090	chr6	+	3573	14	NIC	ENSMUSG00000053460.9	novel	2929	15	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_4	15.7314744998944	2	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCTGGCTTATTAATAG	1285	False	NA	NA	False	NA	NA	NA	72391294	72407695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72396250_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
36091	chr1	+	2262	7	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	7752	-12	intron_retention	FALSE	canonical	0	0	junction_1	75.9363768778399	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGAAATTCACTTTTCT	NA	False	NA	NA	False	NA	NA	NA	165965787	165994066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165965915_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
36093	chr2	+	2757	5	NNC	ENSMUSG00000025817.13	novel	743	8	NA	NA	-13	-1075	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	287.29895144257	292	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGTGGTGTCAAATGAAG	1960	False	NA	NA	False	NA	NA	NA	5850087	5875631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5852918_5853002_5859626_5859730_5860790_5861996_5874374
36094	chr10	+	2241	5	Genic_Genomic	ENSMUSG00000112790.2	novel	2758	1	NA	NA	-17464	-2665	multi-exon	FALSE	non_canonical	0	0	junction_4	27.3358738656733	167	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATGATATTTATACTG	NA	False	NA	NA	False	NA	NA	NA	81832842	81850399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_81832952_81847436_81847564_81847762_81847824_81848374_81848795_81848875
36095	chr10	+	1943	11	NNC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	32	-144	intron_retention	FALSE	non_canonical	0	0	junction_6	203.528892297875	4	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTCTGCTGTGTTCCTGG	9248	False	NA	NA	False	NA	NA	NA	127102287	127117675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112314_127112576_127112719_127113123_127113395_127113563_127114092_127114185_127114278_127117269
36096	chr17	+	2164	15	Antisense	novelGene_ENSMUSG00000041168.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	180	19	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGATGTGTCAGTGGCAG	NA	False	NA	52	True	NA	NA	NA	56921296	56928989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_56921566_56921636_56921803_56921875_56922099_56922258_56922414_56922501_56922647_56922927_56923047_56923133_56923249_56923354_56923449_56924755_56924935_56925320_56925457_56926171_56926395_56926987_56927070_56927222_56927355_56927515_56927575_56928922
36100	chr5	-	2398	17	NNC	ENSMUSG00000029472.14	novel	2413	17	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	905.851188109835	1	81	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCTGAAGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	122959351	122925792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938672_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945468_122952611_122952677_122955883_122956051_122956916_122957027_122957670_122957751_122959042
36101	chr1	+	2791	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	-4	-741	-4	1	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	224	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCATGTCCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	97697892	97721435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
36102	chr13	+	2835	19	NNC	ENSMUSG00000021314.14	novel	3082	20	NA	NA	12541	-2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_17	15.3333333333333	5	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGTTCTTTTTCAAGAG	4422	False	NA	NA	False	NA	NA	NA	19261527	19335089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305502_19309195_19309319_19321705_19321913_19323341_19323466_19326134_19326237_19333905
36104	chr15	+	3550	25	NIC	ENSMUSG00000023007.16	novel	3129	25	NA	NA	-1497	0	intron_retention	FALSE	canonical	2	3	junction_1	42.5293199517175	68	49	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTGTCCTCTTCATGT	NA	False	NA	NA	False	NA	NA	NA	99199666	99214899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_99199866_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
36105	chr1	-	718	5	Intergenic	novelGene_423	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGGCTGCGGCCGGCG	9296	False	NA	NA	False	NA	NA	NA	118581671	118555675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118555832_118559970_118560122_118580028_118580106_118580596_118580703_118581443
36106	chr16	-	2947	7	FSM	ENSMUSG00000022664.12	ENSMUST00000023344.10	4233	7	48	1238	-3	1135	multi-exon	FALSE	canonical	3	47	junction_3	4.7404875511093	84	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCTGTACTATGTC	NA	False	NA	NA	False	NA	NA	NA	44979021	44961173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_44962576_44963983_44964765_44967630_44967699_44971815_44971950_44972939_44973039_44977823_44978010_44978744
36107	chrX	-	2836	8	NNC	ENSMUSG00000031399.16	novel	1899	9	NA	NA	32	-2	intron_retention	FALSE	canonical	0	0	junction_2	45.6123864308629	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGAGAGTCAAGGGTGG	NA	False	NA	NA	False	NA	NA	NA	73436756	73428326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_73430155_73430237_73430398_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
36108	chr5	+	2757	20	NNC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	120	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	56.7504621870937	20	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAAAATCTGCAA	NA	False	NA	NA	False	NA	NA	NA	137016449	137025480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022764_137022841_137022996_137023144_137023786_137023913_137024959
36109	chr11	-	3162	21	ISM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	9	2930	-8	-332	5prime_fragment	FALSE	canonical	3	119	junction_7	16.7955351209778	13	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGACTTGTGACTTACTT	1278	False	NA	NA	False	NA	NA	NA	23845244	23815575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
36110	chr3	-	1918	4	NNC	ENSMUSG00000027506.16	novel	419	4	NA	NA	-17	164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1320.99819160445	9	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	9069555	8994493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8996067_9012551_9012690_9018743_9018860_9069464
36111	chr3	-	1892	4	NIC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	15605	22	intron_retention	FALSE	canonical	3	2563	junction_3	106.402798626519	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCCCCAGACTTGAACCT	NA	False	NA	NA	False	NA	NA	NA	108336854	108333905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108334298_108334575_108335648_108335921_108336052_108336556
36112	chr17	-	1663	2	ISM	ENSMUSG00000067148.16	ENSMUST00000173349.8	516	5	2284	-892	889	-23	intron_retention	FALSE	canonical	3	819	junction_1	0	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTGGCAAGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	46556610	46554868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_46555878_46555956
36113	chr7	+	1431	1	Antisense	novelGene_ENSMUSG00000030528.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCTGCAAAGGGACAGGCA	NA	False	NA	NA	False	NA	NA	NA	80110541	80111972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_80110500_80112000
36115	chr2	+	2292	4	NIC	ENSMUSG00000001403.14	novel	967	6	NA	NA	35	-7	intron_retention	FALSE	canonical	3	1606	junction_1	24.9933324442073	7	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAAATTGTTTTCTCAAG	NA	False	NA	NA	False	NA	NA	NA	164611857	164614820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164612001_164612286_164613979_164614086_164614147_164614423
36116	chr14	-	1747	13	NNC	ENSMUSG00000021814.18	novel	2727	13	NA	NA	4	354	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_12	263.288010340177	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAATTCTGTTTAATGT	8207	False	NA	NA	False	NA	NA	NA	20529972	20506242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529922
36117	chr5	+	2511	6	FSM	ENSMUSG00000049327.18	ENSMUST00000198451.2	1032	6	13	-1492	13	-28	multi-exon	FALSE	canonical	3	722	junction_5	46.3163038248952	4	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAATATTTATTGCCAGG	6115	False	NA	NA	False	NA	NA	NA	124585274	124600343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
36118	chr15	+	3774	14	FSM	ENSMUSG00000035944.18	ENSMUST00000146088.8	3749	14	-18	-7	-18	7	multi-exon	FALSE	canonical	2	10	junction_3	3.06729262113491	53	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATAGCAGTGAGTTAC	NA	False	NA	NA	False	NA	NA	NA	85716488	85743030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85716621_85717347_85717426_85718690_85718773_85720220_85720393_85722906_85723081_85725665_85725742_85728652_85728773_85730531_85730592_85731835_85731875_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
36119	chr8	-	2249	10	Antisense	novelGene_ENSMUSG00000002342.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	298	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGGGCAGCTCTAGTCA	3370	False	NA	NA	False	NA	NA	NA	70635503	70626951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70627054_70629491_70629575_70629889_70629985_70630095_70630257_70631512_70631668_70633187_70633250_70633355_70633700_70633798_70633973_70634078_70634173_70634524
36120	chr2	-	1869	15	NNC	ENSMUSG00000009566.13	novel	2273	15	NA	NA	41	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	99.5416024195155	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGACTCCTATTCTCC	NA	False	NA	NA	False	NA	NA	NA	32584106	32572628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32573176_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
36121	chr12	-	3855	11	NIC	ENSMUSG00000055917.16	novel	2188	12	NA	NA	24	-12	intron_retention	FALSE	canonical	3	359	junction_5	47.5736271478221	90	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAACTTTCCAATACCAT	NA	False	NA	NA	False	NA	NA	NA	40495749	40365056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
36122	chr6	-	1214	6	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	749.193699920121	31	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	NA	False	NA	NA	NA	124791121	124787677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788310_124788841_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
36123	chr7	-	3266	4	NIC	ENSMUSG00000042502.11	novel	2906	7	NA	NA	188	-12	intron_retention	FALSE	canonical	3	578	junction_2	11.6141675934562	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCTGCTTACATTGTGG	5771	False	NA	NA	False	NA	NA	NA	126794859	126791208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126793294_126793374_126793814_126793915_126794331_126794532
36124	chrUn_JH584304v1	+	3070	5	Intergenic	novelGene_4591	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	43	junction_3	6.53356717268599	31	73	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACAGGTAGGAGCTGGC	NA	False	NA	NA	False	NA	NA	NA	14081	29511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_14202_19242_19346_20219_20377_24796_24959_26983
36126	chr1	+	2308	16	NNC	ENSMUSG00000026192.14	novel	2845	16	NA	NA	17	-442	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	163.036792030374	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTTTTCACCCAAAGTGA	NA	False	NA	NA	False	NA	NA	NA	71596388	71618348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_71596434_71596655_71596768_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
36127	chr11	-	524	2	ISM	ENSMUSG00000044847.14	ENSMUST00000062458.6	2126	5	10430	2505	10430	-2505	internal_fragment	FALSE	canonical	3	156	junction_1	0	13	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAGAAATAAAGTGCATGAA	NA	False	NA	NA	False	NA	NA	NA	45825332	45824411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_45824851_45825247
36128	chr11	-	1798	1	Genic_Genomic	ENSMUSG00000044847.14	novel	NA	NA	NA	NA	14871	2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGCTGCTTGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	45820891	45819093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_45819100_45820900
36129	chr1	+	2168	20	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	247.526903319692	4	44	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGAGCCTCCTGCTTGCCG	3046	False	NA	NA	False	NA	NA	NA	171910377	171949887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939810_171949767
36132	chr15	+	1200	8	FSM	ENSMUSG00000009585.19	ENSMUST00000175752.8	1977	8	100	677	93	40	multi-exon	FALSE	canonical	3	31	junction_4	224.554434107971	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCCAACCCCAAGTCTAG	8391	False	NA	NA	False	NA	NA	NA	79776748	79791610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
36133	chr2	-	1432	13	NNC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	228.117050850849	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTATCTGGTTTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	130126377	130121233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130121358_130121446_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
36134	chr11	+	1896	10	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	2	-158	intron_retention	FALSE	canonical	0	0	junction_5	530.049473581895	3	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCCCAAACCCTCATTTT	NA	False	NA	NA	False	NA	NA	NA	4824000	4844042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838326_4838359_4838879_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
36135	chr10	-	1626	11	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-24	-871	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	812.403157305534	5	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8668	False	NA	NA	False	NA	NA	NA	128401880	128394507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395094_128395259_128395901_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
36136	chr17	-	1237	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-216	2940	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGAAGGCGAAGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	35821664	35817033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820142_35820326_35820434_35820875_35821037_35821184
36137	chr14	+	4829	1	ISM	ENSMUSG00000048279.20	ENSMUST00000119943.8	14991	9	62603	14	17182	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	35	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATATAGAAAATCATTTT	NA	False	NA	NA	False	NA	NA	NA	61448103	61452932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_61448100_61452900
36138	chr14	+	2759	12	NNC	ENSMUSG00000022070.8	novel	3834	13	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	92.8183153769852	261	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCGTTTTCCTTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	99283805	99311975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298928_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
36139	chr7	-	2392	9	FSM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	12	-10	12	-7	multi-exon	FALSE	canonical	3	59	junction_7	50.6814500088543	19	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTATGAACACCTTGGC	NA	False	NA	NA	False	NA	NA	NA	112968587	112914839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112968078_112968166_112968405
36140	chr13	+	2190	7	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	-387	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	344.2416786697	2	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCTTACTTGTCCGTG	NA	False	NA	NA	False	NA	NA	NA	54239577	54262365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54239585_54247038_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
36141	chr9	-	2175	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	13	-5	intron_retention	FALSE	canonical	2	7	junction_4	87.625624106194	8	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGTCATGTTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	27066676	27008684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010271_27011378_27011479_27011590_27011764_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
36142	chr14	+	2738	17	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	34	-271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	396.117564619394	1	76	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTATCACTCCCTGC	NA	False	NA	NA	False	NA	NA	NA	122344583	122396745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378576_122378723_122379775_122379856_122380818_122380932_122382508_122382640_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
36143	chr9	-	2721	8	ISM	ENSMUSG00000025646.10	ENSMUST00000161521.8	2381	12	-53	4453	15	3227	5prime_fragment	FALSE	canonical	3	126	junction_6	12.2407816210354	50	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGTTCCTAATTTGGG	NA	False	NA	NA	False	NA	NA	NA	108903173	108893305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
36144	chr11	-	1313	4	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	1678	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1531.57029076551	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGATTGTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	120470528	120468937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469672_120469776_120470257_120470341_120470406_120470493
36145	chr11	+	1879	4	NIC	ENSMUSG00000017404.13	novel	751	6	NA	NA	4	-20	intron_retention	FALSE	canonical	3	9068	junction_1	2918.31690457969	5	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGCCCTCTTGTTTAGC	NA	False	NA	NA	False	NA	NA	NA	97917786	97921298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97917817_97918648_97918756_97919171_97920712_97921096
36146	chr3	+	3596	17	Genic_Genomic	ENSMUSG00000003617.17	novel	4092	20	NA	NA	6795	26148	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAAGCTTAGAGAGCTGCT	NA	False	NA	NA	False	NA	NA	NA	20050110	20089457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_20051196_20056488_20056578_20057388_20057596_20062978_20063087_20064963_20065151_20065550_20065739_20066860_20067094_20068185_20068367_20069988_20070169_20072971_20073084_20073966_20074121_20076920_20077004_20079894_20080083_20083121_20083212_20083312_20083481_20084475_20084574_20089212
36147	chrX	+	1812	4	NIC	ENSMUSG00000008682.14	novel	799	7	NA	NA	0	-12	intron_retention	FALSE	canonical	3	2920	junction_1	3061.76989483026	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTCGCTTATGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	73314462	73316729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73314481_73314584_73315514_73315784_73316441_73316520
36148	chr10	-	3572	11	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	0	-6	intron_retention	FALSE	canonical	3	4	junction_8	173.330464719852	1	118	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCACTGCAGTGTTGGC	NA	False	NA	NA	False	NA	NA	NA	116417405	116321076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116363731_116363855_116384937_116385081_116417357
36149	chr9	-	2176	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	17	-1	-1	1	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	711	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTGCCTCTTTTCACGG	NA	False	NA	NA	False	NA	NA	NA	107215532	107204281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
36150	chr15	-	1720	15	NIC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	4	-1	intron_retention	FALSE	canonical	0	0	junction_3	133.920933115516	19	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTACCAGGATGTAACTC	NA	False	NA	NA	False	NA	NA	NA	102259177	102246692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
36152	chr13	-	1539	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-24	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	236	24	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314473	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312368_34313276_34313338_34314159
36153	chr2	-	1884	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	94	-1	81	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5385	False	NA	NA	False	NA	NA	NA	84508306	84501659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
36154	chr15	-	1659	14	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	-23	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	1153.48005987131	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTGCTTGAATTTCCT	2640	False	NA	NA	False	NA	NA	NA	43146138	43113449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43128938_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43144414_43144625_43145998
36155	chr9	+	1619	11	ISM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	16568	6	348	-6	3prime_fragment	FALSE	canonical	3	694	junction_1	50.986370727872	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAGACTCTTGAGTTTC	NA	False	NA	NA	False	NA	NA	NA	98462351	98470429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
36156	chr5	-	1832	7	FSM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	17	36	17	-36	multi-exon	FALSE	canonical	3	208	junction_1	161.447015732372	991	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTACCTGGAATTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	121045567	121034354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
36157	chr2	-	4311	21	NIC	ENSMUSG00000050211.15	novel	4477	20	NA	NA	-182	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_19	8.08949936646267	65	13	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAATATTGGTTCATCTG	NA	False	NA	NA	False	NA	NA	NA	120075998	119996898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202_120007426_120011897_120012035_120013184_120013321_120015051_120015090_120015480_120015568_120015669_120015831_120016827_120016892_120017676_120017720_120018990_120019032_120019884_120020017_120021674_120021812_120030693_120030767_120075166_120075555_120075896
36158	chr1	+	3750	3	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-53	11779	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	9	87	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTGTGTGTGCG	NA	False	NA	NA	False	NA	NA	NA	88387351	88405059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_88388039_88398642_88398830_88402183
36159	chr18	-	2575	14	FSM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	1	1005	1	821	multi-exon	FALSE	canonical	3	538	junction_1	125.2370060817	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTATTTAAATGCTTTT	NA	False	NA	NA	False	NA	NA	NA	66135709	66114813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
36160	chr4	-	1393	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	729.869946558213	195	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093136_41093507_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
36161	chr11	+	1371	7	ISM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	0	18747	0	-3032	5prime_fragment	FALSE	canonical	3	94	junction_2	3.73050488093323	9	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAGAACAAATAAATTTT	NA	False	NA	NA	False	NA	NA	NA	110289947	110385720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120
36162	chr14	+	1918	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1288	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2369.69959548452	2	92	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTGTGCTGCAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	63359964	63380600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63359990_63370738_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
36164	chr9	-	2424	12	FSM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	22	1518	-6	138	multi-exon	TRUE	canonical	3	139	junction_7	15.3563726777577	368	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCCAAGTATTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	15191205	15173164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
36165	chr12	-	2971	10	NNC	ENSMUSG00000021238.12	novel	3471	12	NA	NA	6500	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	74.6990670442674	1	71	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCTTAGGAAAAATACAGTA	NA	False	NA	NA	False	NA	NA	NA	84488591	84477519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484868_84486186_84486239_84486277_84486490_84487008_84487088_84488536
36166	chr9	-	2034	1	FSM	ENSMUSG00000119666.1	ENSMUST00000240226.1	72	1	-1288	-674	-1288	674	mono-exon	FALSE	NA	NA	NA	NA	NA	516	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGGGGGGGGGGGTTCTA	NA	False	NA	NA	False	NA	NA	NA	88404941	88402907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88402900_88404900
36167	chr14	-	1607	9	NNC	ENSMUSG00000021273.12	novel	3698	10	NA	NA	-61	-1250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	281.570567309511	8	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCCTTGTCTTTCTCAT	4246	False	NA	NA	False	NA	NA	NA	63415307	63383851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63384418_63388598_63388627_63388694_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980_63402079_63415131
36168	chr9	-	3054	18	Intergenic	novelGene_1164	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.470588235294118	1	67	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCAGCCGGCCCGGACAT	1131	False	NA	NA	False	NA	NA	NA	108262795	108225101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_108225217_108228107_108228232_108233604_108233743_108237291_108237420_108239758_108239901_108240031_108240097_108243957_108244072_108245008_108245190_108248097_108248267_108249771_108249990_108250808_108250890_108251422_108251518_108255634_108255825_108256461_108256551_108258524_108258750_108261281_108261356_108261597_108261712_108262003
36169	chr9	+	2597	6	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	2	0	intron_retention	FALSE	canonical	3	785	junction_1	68.5291178988902	10	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	NA	False	NA	NA	NA	20799564	20803474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799874_20800633_20800736_20800929_20800981_20801066_20802012_20802200_20803044_20803127
36170	chr3	+	3008	16	NNC	ENSMUSG00000028256.17	novel	913	7	NA	NA	-56	-1	intron_retention	FALSE	canonical	2	3	junction_1	28.2210323458705	115	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAACAGTATAAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	144824678	144859653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_144825479_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
36171	chr11	-	1000	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	50	1	3	-1	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTTCTCTTTATTCTGA	NA	False	NA	NA	False	NA	NA	NA	115427052	115413928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
36172	chr17	+	770	1	Antisense	novelGene_ENSMUSG00000043801.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACCACCGAGGCCCCGG	NA	False	NA	NA	False	NA	NA	NA	17565429	17566199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_17565400_17566200
36173	chr15	+	5355	20	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	69	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	97.4993998134805	2	224	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAAGCTGAACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	57775703	57833456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57779365_57779513_57783326_57783443_57795947_57796080_57799486_57799647_57801297_57803543_57803711_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817039_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
36174	chr12	-	1775	6	NIC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-10	-4	intron_retention	FALSE	canonical	3	9641	junction_1	450.341648085096	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGACTGACTTATTTA	NA	False	NA	NA	False	NA	NA	NA	65120713	65109213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_65109515_65110451_65110550_65112510_65113552_65115775_65115884_65116724_65116827_65120588
36176	chr5	-	596	1	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	1335	-251	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTCTTCCTTCGCTTCA	NA	False	NA	NA	False	NA	NA	NA	124715720	124715124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_124715100_124715700
36177	chr14	-	2063	17	NNC	ENSMUSG00000021830.15	novel	4069	24	NA	NA	-7	-10056	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	9.4406037942496	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCACTACTGGAAGCATT	NA	False	NA	NA	False	NA	NA	NA	45456889	45382419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442838_45448609_45448696_45450742_45450982_45456452_45456507_45456673
36178	chr2	-	1473	7	NNC	ENSMUSG00000027071.15	novel	1764	13	NA	NA	-3774	-5390	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATGGATTCGCCCATT	NA	False	NA	NA	False	NA	NA	NA	84871580	84867787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84868313_84868695_84868881_84870215_84870322_84870606_84870798_84870900_84871133_84871261_84871367_84871451
36179	chr12	-	1735	6	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-22	0	intron_retention	FALSE	canonical	3	12102	junction_5	2256.80290676878	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685899	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28685487_28685578_28685663_28685854
36180	chr3	+	4367	19	FSM	ENSMUSG00000025757.14	ENSMUST00000204702.3	9479	19	47	5065	-7	1454	multi-exon	FALSE	canonical	3	15	junction_16	4.58930587290297	38	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAGTAGATATCAGTTA	NA	False	NA	NA	False	NA	NA	NA	40699908	40745473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_40700217_40705106_40705165_40707581_40707723_40711432_40711556_40714795_40714896_40715213_40715348_40721243_40721489_40721634_40721712_40722401_40722554_40723183_40723291_40724942_40725077_40726978_40727176_40733766_40733866_40735991_40736130_40738660_40738787_40739051_40739160_40739710_40739831_40741155_40741318_40743635
36183	chr3	-	2571	13	NNC	ENSMUSG00000089911.5	novel	2782	12	NA	NA	-37	-21	intron_retention	FALSE	non_canonical	0	0	junction_1	267.037086479679	2	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTTTCTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	116456177	116424833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116425161_116425201_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
36184	chr9	-	1326	8	NNC	ENSMUSG00000062270.15	novel	4640	10	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2376.97242692618	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996704	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977190_89984352_89984440_89989287_89989356_89992178_89992226_89996588
36185	chr16	-	3786	9	Antisense	novelGene_ENSMUSG00000022800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	169	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGCAGCGCAGAGCGCG	NA	False	NA	NA	False	NA	NA	NA	32728750	32698183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32698366_32704492_32704620_32711628_32711781_32715451_32715568_32718743_32718839_32719245_32719318_32721011_32721078_32722788_32722914_32725899
36186	chr6	+	1249	5	NIC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	7	-251	intron_retention	FALSE	canonical	0	0	junction_2	388.333941344302	122	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTTTAAGAAGTTAGAGCA	1351	False	NA	NA	False	NA	NA	NA	124807186	124810244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
36187	chr15	+	2184	13	Antisense	novelGene_ENSMUSG00000003360.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACCCAGGCCGCGCGGC	4671	False	NA	NA	False	NA	NA	NA	98546057	98560781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98546611_98547595_98547776_98548026_98548170_98548472_98548700_98548793_98548939_98549126_98549237_98549344_98549486_98549802_98549938_98550358_98550425_98550773_98550863_98554482_98554593_98556109_98556317_98560703
36188	chr7	-	1770	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	621.456675883364	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGAGGTTCCCATATCA	NA	False	NA	NA	False	NA	NA	NA	99002321	98994612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98994923_98995225_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
36189	chr4	-	2771	11	Antisense	novelGene_ENSMUSG00000028248.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGATGCTTCTACTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	21875248	21848082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_21848138_21854345_21854446_21857179_21857367_21859081_21859301_21860811_21860991_21861984_21862184_21865876_21866014_21869514_21869608_21871429_21871607_21873583_21874671_21874910
36190	chr11	+	3689	18	Antisense	novelGene_ENSMUSG00000032782.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	31	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACATCACTGGGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	69190340	69214691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69190817_69191068_69191142_69193677_69193795_69193922_69194094_69195086_69195144_69196309_69196456_69198768_69199027_69200172_69200342_69200808_69200927_69202157_69202292_69206097_69206252_69209770_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212245_69212673_69212759_69213514
36191	chr2	-	1597	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	-6	-45	-6	45	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	741	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGTGTGCACATTTTTT	7037	False	NA	NA	False	NA	NA	NA	13276232	13081777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
36193	chr12	+	2278	1	ISM	ENSMUSG00000021255.18	ENSMUST00000116402.10	4300	7	158216	18	14924	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	1	97	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAAAGGTCTGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	86566106	86568384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_86566100_86568400
36194	chr17	+	2644	17	FSM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	-83	6	-12	-6	multi-exon	FALSE	canonical	3	89	junction_2	111.513574706176	371	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGCCCCAGACTCTTT	NA	False	NA	NA	False	NA	NA	NA	56980281	57018758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56980412_56993005_56993062_56999520_56999722_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
36195	chr2	+	1694	5	NIC	ENSMUSG00000062647.17	novel	920	7	NA	NA	-11	-6	intron_retention	FALSE	canonical	3	4686	junction_4	321.467338931967	6	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801139_26801433_26802458_26802682_26802814_26802999_26803070_26803176
36196	chr17	-	1908	8	ISM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	4779	7	-2656	2	3prime_fragment	FALSE	canonical	1	168	junction_4	157.628340971892	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	34104856	34094639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822
36197	chr2	+	1796	12	Antisense	novelGene_ENSMUSG00000027195.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAATGAA	NA	False	NA	NA	False	NA	NA	NA	93863038	93988255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_93863791_93863840_93864003_93864267_93864422_93874217_93874283_93875701_93875788_93882598_93882632_93895896_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
36198	chr8	-	2509	2	Intergenic	novelGene_1587	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	40	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTCCCAAACCGCTCGG	NA	False	NA	NA	False	NA	NA	NA	20160195	20016572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_20016683_20157796
36199	chrX	-	1726	5	NNC	ENSMUSG00000031422.17	novel	1825	4	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1545.33823158556	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135644435	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135633856_135633949_135635251_135636294_135636372_135640553_135640644_135644341
36200	chr12	-	1431	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	0	-14	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	111638731	111635794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
36201	chr3	+	2125	7	NNC	ENSMUSG00000028156.13	novel	856	8	NA	NA	-4493	993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	730.969599611062	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTACGTCAAGAATGT	NA	False	NA	NA	False	NA	NA	NA	138252122	138262968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150_138261307_138261479
36204	chr6	-	1998	8	NIC	ENSMUSG00000030304.12	novel	1661	13	NA	NA	192	898	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	411.708238282145	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTTAAATTTTATAGTT	NA	False	NA	NA	False	NA	NA	NA	148097549	148081815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148083238_148083385_148083469_148084586_148084707_148089530_148089599_148090983_148091083_148092327_148092384_148096692_148096789_148097495
36207	chr6	+	1760	10	NNC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	37	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	157.76854433076	7	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTGATTAGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	72575584	72584462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72575780_72577955_72578139_72578458_72578682_72580609_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
36208	chr16	+	1105	10	Antisense	novelGene_ENSMUSG00000025613.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGCCGAGGAAGCAAGGGG	NA	False	NA	NA	False	NA	NA	NA	87283351	87292714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592_87290674_87291223_87291316_87292616
36209	chr2	-	3259	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	78	0	51	0	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	440	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	NA	NA	NA	106804691	106792871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
36210	chrX	+	1527	5	NIC	ENSMUSG00000001964.15	novel	1595	6	NA	NA	-5	-142	intron_retention	FALSE	canonical	3	248	junction_2	19.4855715851499	188	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGTTGATTCTTCCTA	NA	False	NA	NA	False	NA	NA	NA	73298430	73301351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73298640_73298813_73298922_73299058_73299483_73300483_73300531_73300612
36211	chrX	-	1124	2	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCAGGTGTCTTTATAG	2476	False	NA	NA	False	NA	NA	NA	13070081	13068786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13069015_13069185
36214	chr11	+	1310	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-31	-17540	intron_retention	FALSE	non_canonical	0	0	junction_2	527	1161	34	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9400	False	NA	NA	False	NA	NA	NA	88861046	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861306_88861723_88861851_88863316
36215	chr17	-	2850	9	FSM	ENSMUSG00000058704.10	ENSMUST00000233514.3	3163	9	27	286	5	-286	multi-exon	FALSE	canonical	3	239	junction_3	25.6502923959942	452	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTAGGATATAATCATGA	NA	False	NA	NA	False	NA	NA	NA	74601831	74506316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
36217	chr7	+	4257	13	FSM	ENSMUSG00000030770.16	ENSMUST00000033030.14	4454	13	191	6	-8	-6	multi-exon	FALSE	canonical	2	13	junction_2	5.24603024517905	142	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAACTCTTCGCTGTTTC	3520	False	NA	NA	False	NA	NA	NA	112027103	112190893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_112027308_112143383_112143474_112143939_112144011_112146717_112146821_112159135_112159277_112166969_112167086_112172077_112172137_112174561_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
36218	chr8	+	2368	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	179	junction_1	102.688395968905	2	58	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGTTGTCATTTTGAA	NA	False	NA	NA	False	NA	NA	NA	85415906	85426412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
36219	chr9	+	1787	8	ISM	ENSMUSG00000032387.16	ENSMUST00000169003.8	1803	9	980	19	69	-17	3prime_fragment	FALSE	canonical	3	8	junction_5	575.471093619685	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACCTGAAGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	65537909	65567791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558942_65558987_65566416_65566487_65566719
36221	chr18	-	3395	6	NIC	ENSMUSG00000117679.2	novel	2258	12	NA	NA	118	-2	intron_retention	FALSE	canonical	3	9	junction_5	22.2207110597298	23	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTAGTGATGAGTATATT	NA	False	NA	NA	False	NA	NA	NA	36811504	36804209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36809309_36809415_36810049_36810162
36223	chr16	-	1986	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	84	1333	-3	566	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1	80	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAACTTGTTTTTACAAAG	NA	False	NA	NA	False	NA	NA	NA	22084671	22064631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
36224	chr3	+	2015	15	ISM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-6	4625	-3	-4617	5prime_fragment	FALSE	canonical	3	1060	junction_7	79.2243005391551	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGATGGTGGTTGTTTC	4853	False	NA	NA	False	NA	NA	NA	34074250	34118869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267
36225	chr6	+	4090	12	Antisense	novelGene_ENSMUSG00000038784.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCGGCCTCCGCTGCG	NA	False	NA	NA	False	NA	NA	NA	35021219	35110643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_35023296_35027998_35028497_35029778_35030027_35033145_35033204_35041832_35041957_35045521_35045651_35046306_35046406_35047150_35047237_35054913_35055115_35056896_35057160_35105744_35105844_35110434
36226	SIRV3	+	2019	3	FSM	SIRV3A	SIRV303	2018	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	1857	junction_1	482	3	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1962	7822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4568_4780_6057
36227	chr4	+	2694	6	NNC	ENSMUSG00000046862.15	novel	3886	5	NA	NA	-8	-107	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	63.8260135054666	8	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATAGGTGTCCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	143139570	143147554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_143139662_143141918_143141984_143143209_143143523_143143942_143144531_143145407_143146975_143147484
36228	chr19	+	1917	6	NNC	ENSMUSG00000071653.10	novel	500	5	NA	NA	2	1746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1570.15094815753	16	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8866280	8869991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774_8868258_8868456_8869471_8869842
36229	chr15	-	2075	12	NNC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	47	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	124.948319895179	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACACTGTCTTCTTGTA	8713	False	NA	NA	False	NA	NA	NA	76501001	76496584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498046_76498254_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
36231	chr11	-	2052	9	ISM	ENSMUSG00000020432.13	ENSMUST00000109992.8	1945	10	28	2	28	-2	intron_retention	FALSE	canonical	3	136	junction_3	10.0304224736548	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	3881761	3867193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392
36232	chr1	+	3065	22	NNC	ENSMUSG00000036104.13	novel	4243	24	NA	NA	-3	-286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	33.2956249296478	3	76	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAGTATATATATATAT	3065	False	NA	NA	False	NA	NA	NA	127796545	127871319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_127796567_127796661_127796718_127801816_127801893_127816892_127817026_127818754_127818834_127829315_127829436_127831408_127831575_127837587_127837688_127843375_127843458_127845957_127846027_127847304_127847379_127852464_127852558_127853011_127853179_127855196_127855287_127855685_127855859_127858126_127858182_127858443_127858816_127862153_127862292_127865074_127865303_127865725_127865823_127865934_127866039_127870747
36233	chr14	-	3417	22	NNC	ENSMUSG00000022021.15	novel	2090	16	NA	NA	8	-51370	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	46.8041221511539	8	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCAAGCCTGCCGCCCA	NA	False	NA	NA	False	NA	NA	NA	87378652	87099212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_87099984_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
36234	chr5	+	2551	18	Antisense	novelGene_ENSMUSG00000098624.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	108	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCGAGATTAAAAGAATGAC	1007	False	NA	NA	False	NA	NA	NA	137294555	137305933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_137294582_137294728_137294884_137295034_137295233_137295342_137295493_137295599_137295776_137296060_137296250_137296489_137296555_137296650_137296716_137296989_137297157_137297896_137297937_137298018_137298113_137298226_137298433_137298515_137298674_137300385_137300570_137300779_137300942_137301176_137301303_137305307_137305457_137305692
36235	chr18	+	1645	5	NNC	ENSMUSG00000001473.8	novel	1758	4	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	282.15952934466	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCATCGGTCTCTTGAACT	NA	False	NA	NA	False	NA	NA	NA	67523777	67535817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379_67534563_67534682
36237	chr10	-	1319	5	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	3435	-1	-171	1	3prime_fragment	FALSE	canonical	3	1924	junction_2	87.0125709308718	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCTTCTGTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	127354820	127352990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660
36239	chr11	-	2381	16	NNC	ENSMUSG00000020780.16	novel	2526	16	NA	NA	8	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	221.260630629732	6	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGGAGACTGTGTCTGG	9907	False	NA	NA	False	NA	NA	NA	116164953	116135999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159144_116159208_116162734_116162806_116164751
36240	chrX	+	1551	9	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	7254	9	2726	-9	3prime_fragment	FALSE	canonical	3	3907	junction_8	373.621047988467	1	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGAAGTTTTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	105237959	105247296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
36242	chr14	-	3176	17	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	779	-7205	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_3	86.1712502810537	1	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTGTGGTTTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	62997782	62930457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938109_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62981357_62981448_62996649_62996800_62997614
36243	chr10	-	2375	7	NIC	ENSMUSG00000000901.18	novel	1793	9	NA	NA	0	-5	intron_retention	FALSE	canonical	3	207	junction_2	11.9303534454489	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTAAGCGCCTGTCTGTTT	5083	False	NA	NA	False	NA	NA	NA	75768309	75759061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75759950_75761253_75761512_75762244_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
36244	chr7	-	1695	16	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	53	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	783.648345170772	1	46	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGAGGCATGGGGGCTCA	NA	False	NA	NA	False	NA	NA	NA	33929614	33901591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907729_33915396_33915435_33917722_33917768_33918455_33918528_33920036_33920186_33920267_33920352_33926542_33926639_33929516
36246	chr7	+	1501	8	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	4	319	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	164.421931105833	14	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTTCTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	100142564	100148828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100142673_100143420_100143576_100145992_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
36247	chr17	-	1777	7	NNC	ENSMUSG00000024026.14	novel	2024	7	NA	NA	28	1	intron_retention	FALSE	non_canonical	0	0	junction_1	1204.05135549389	2	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTCTGGGCAGCAAGT	NA	False	NA	NA	False	NA	NA	NA	30831515	30811838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30811981_30812021_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
36248	chr5	+	952	6	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	162	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8684.88731993686	10	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697843	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115699001_115699217_115699305_115699391_115699578_115700484_115700626_115701341
36249	chr2	+	1436	5	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-7	-18	intron_retention	FALSE	canonical	3	4686	junction_4	175.043566005723	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTACAAAATTATCTTGACT	NA	False	NA	NA	False	NA	NA	NA	26800821	26803312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801139_26801433_26801584_26802030_26802172_26802377_26803070_26803176
36250	chr6	-	1845	5	Antisense	novelGene_ENSMUSG00000007458.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	62	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTGAGCCCTGGCC	NA	False	NA	45	True	NA	NA	NA	122294632	122290253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122290385_122292015_122292125_122292261_122292394_122293008_122293136_122293286
36251	chr1	+	2784	8	NIC	ENSMUSG00000026020.10	novel	1713	13	NA	NA	3	-1319	intron_retention	FALSE	canonical	3	1434	junction_3	204.846283832536	13	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGGAAAGGTGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	59724146	59744904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59743910_59744751
36254	chr5	-	2318	7	FSM	ENSMUSG00000063015.13	ENSMUST00000058550.15	2804	7	482	4	415	-4	multi-exon	FALSE	canonical	3	340	junction_6	48.6052694902746	416	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGTTTGTGTAGGAGTT	NA	False	NA	NA	False	NA	NA	NA	93353872	93329795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_93331280_93335446_93335678_93335938_93336080_93337005_93337081_93337422_93337552_93350163_93350322_93353772
36256	chr13	-	2834	4	Antisense	novelGene_ENSMUSG00000055763.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	172	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAGAGCAGGACACAGAGA	NA	False	NA	NA	False	NA	NA	NA	66271624	66098449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_66098503_66267449_66267569_66267774_66267837_66269024
36257	chr8	-	2174	9	Fusion	ENSMUSG00000053226.8_ENSMUSG00000003813.16	novel	429	4	NA	NA	0	-6	multi-exon	TRUE	canonical	3	11	junction_1	442.171912269425	54	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCAGCTGTGCGTGCTT	NA	False	NA	NA	False	NA	NA	NA	85567270	85542039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_85543163_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
36258	chr1	-	4056	13	NNC	ENSMUSG00000026571.13	novel	4110	19	NA	NA	-15953	-9	intron_retention	FALSE	canonical	1	1	junction_12	12.4863814703149	4	82	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGATATCCTAAATTTGAC	4702	False	NA	NA	False	NA	NA	NA	165232283	165157082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165232135
36259	chr18	-	2589	7	NNC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	8	5	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	150.093766988802	1633	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATGGTGGCTTCCTGCCT	6773	False	NA	NA	False	NA	NA	NA	74340842	74328364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339833_74339956_74340664
36260	chr12	+	5346	25	ISM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	7	36045	7	-10636	5prime_fragment	TRUE	canonical	3	133	junction_1	24.5049598154242	25	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTACATTACTTGGATT	6478	False	NA	NA	False	NA	NA	NA	110567892	110597334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_110568289_110578778_110578867_110580478_110580653_110580786_110581043_110581324_110581512_110582773_110583046_110583131_110583360_110584053_110585131_110585622_110585803_110586732_110586883_110587960_110588108_110590942_110591084_110591860_110592038_110592164_110592276_110592355_110592476_110593292_110593533_110594373_110594530_110594666_110594781_110595157_110595269_110595341_110595552_110595710_110595858_110596010_110596178_110596256_110596431_110596931_110597098_110597177
36264	chr7	-	3169	24	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-9	-11	intron_retention	FALSE	canonical	3	8	junction_20	47.6394778389863	1	100	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTATTGATTTCTGAGC	NA	False	NA	NA	False	NA	NA	NA	140697695	140681148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140689583_140689685_140690288_140690426_140690543_140690670_140691067_140691143_140697626
36265	chr2	+	1347	11	NNC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	599.70275970684	1	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	90884421	90889777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90884540_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
36266	chr15	-	1295	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	51	5	-2	-1	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	7	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3569	False	NA	NA	False	NA	NA	NA	79967556	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
36267	chr6	-	3605	26	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	1610	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	192.488337309043	1	166	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCATCCTGTCCTGGCTG	5216	False	NA	NA	False	NA	NA	NA	125166843	125144972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145146_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154884_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161023_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725
36268	chr6	-	2270	12	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTGTTGTTGCATGA	NA	False	NA	NA	False	NA	NA	NA	37943108	37908336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37908435_37922454_37922621_37926154_37926336_37928391_37928472_37930421_37930562_37933334_37933409_37933936_37934108_37934443_37934771_37935494_37935629_37937714_37937791_37941637_37941786_37942433
36269	chr6	+	1793	3	ISM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	4018	4	4018	-4	3prime_fragment	FALSE	canonical	3	4116	junction_2	222.5	1	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGGTCTTATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	122688544	122691588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122688763_122689587_122689675_122690100
36271	chr13	-	3915	7	NNC	ENSMUSG00000094870.9	novel	2966	8	NA	NA	422	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	57.1596205570175	1	65	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTTATGTGTATGGGT	NA	False	NA	NA	False	NA	NA	NA	120251815	120226725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_120229551_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684
36272	chr3	+	2649	9	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	51	-2802	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	55.9797675504284	3	115	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGACCTTATGCCTAC	NA	False	NA	NA	False	NA	NA	NA	63202919	63249238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
36273	chr5	-	1848	9	NNC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	6	-440	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	296.833286543137	108	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	NA	False	NA	NA	NA	124717089	124708715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124716683
36274	chr3	+	2358	14	NNC	ENSMUSG00000027710.15	novel	2905	17	NA	NA	-20	-20	intron_retention	FALSE	canonical	0	0	junction_13	69.5275689222389	2	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACTCCGTTTTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	36120195	36143021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141908_36141949_36142636_36142764_36142968
36275	chr1	+	1547	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113819.2	1313	11	-15	-219	-15	-2	multi-exon	FALSE	canonical	3	31	junction_2	696.999605451825	1344	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGAGAATTTGTTGATT	7866	False	NA	NA	False	NA	NA	NA	74275693	74307366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74275770_74275976_74276207_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
36276	chr6	-	3045	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	10	4	10	-4	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	1	109	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATCGGAGTGTTACT	NA	False	NA	NA	False	NA	NA	NA	146479323	146451133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
36278	chr14	-	1584	10	NIC	ENSMUSG00000060373.16	novel	1683	9	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_8	1560.5251964928	2	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8732	False	NA	NA	False	NA	NA	NA	52341478	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52335772_52336002_52341345
36279	chrX	-	1658	15	Antisense	novelGene_ENSMUSG00000025287.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGCGCTGCCCGGGGT	NA	False	NA	NA	False	NA	NA	NA	154080637	154045459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_154045669_154052652_154052748_154054945_154054992_154056026_154056137_154056385_154056424_154064604_154064690_154065045_154065149_154069282_154069361_154076903_154076973_154078158_154078269_154078415_154078512_154078680_154078764_154079319_154079407_154079574_154079726_154080339
36281	chr4	+	4182	17	Antisense	novelGene_ENSMUSG00000028678.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	177	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAACGCCTAAACCGCTGC	NA	False	NA	NA	False	NA	NA	NA	117016846	117039764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_117017583_117019208_117019311_117019408_117019513_117019798_117019868_117022338_117022452_117022556_117022759_117023508_117023654_117024079_117024588_117027037_117027189_117027276_117027337_117028913_117029012_117029483_117029583_117030800_117032206_117035116_117035162_117035333_117035435_117037759_117037868_117039628
36282	chr17	+	1346	4	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	-128	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1955.35316503183	3	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	2908	False	NA	NA	False	NA	NA	NA	35816786	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820453_35821184
36283	chr6	+	2537	3	ISM	ENSMUSG00000046679.17	ENSMUST00000141972.8	2630	11	14	22809	-2	1758	intron_retention	FALSE	canonical	3	14	junction_1	10.5	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTCCAGAAGAGGGAGTC	1785	False	NA	NA	False	NA	NA	NA	86415687	86424561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_86415830_86420708_86420958_86422415
36285	chr2	+	1809	6	NIC	ENSMUSG00000032966.15	novel	894	6	NA	NA	-19	-1	combination_of_known_junctions	FALSE	canonical	2	41	junction_3	1074.30989942381	597	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTCATGGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	151384485	151403611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_151384665_151384737_151384786_151385825_151386061_151399305_151399419_151401377_151401541_151402540
36286	chr17	+	3541	27	NNC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	-1	64	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	38.0067729871849	3	115	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTCCGTGTTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	66430564	66458448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447105_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
36287	chr2	+	3962	4	FSM	ENSMUSG00000038375.16	ENSMUST00000043237.14	3979	4	8	9	8	-9	multi-exon	FALSE	canonical	3	61	junction_1	13.490737563232	61	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACATTATGCTTTCTGCC	4049	False	NA	NA	False	NA	NA	NA	155223741	155231761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_155223938_155227209_155227385_155227800_155228090_155228459
36289	chr5	+	1440	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	77	3478	10	-1	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	2239	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTGCTATGCTTAATTG	NA	False	NA	NA	False	NA	NA	NA	134611620	134627181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
36290	chr2	-	3421	7	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	80	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	32.0646049233246	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATATTCTGGTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	35351381	35290197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35312191_35312281_35313243_35313425_35322525_35322645_35351206
36292	chr2	+	3804	10	NNC	ENSMUSG00000033943.16	novel	6995	21	NA	NA	1	5228	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	45.188767313991	1	146	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCAATCCTGTGGTAAG	NA	False	NA	NA	False	NA	NA	NA	119727713	119762400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119727828_119733086_119734211_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859_119757203_119762191
36293	chr10	-	2151	11	NIC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	-19	-20	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	61.0777373516734	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATACTTTTTGCCTTTC	348	False	NA	NA	False	NA	NA	NA	41685645	41594861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41685568
36294	chr15	+	1950	7	NIC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	-11	-892	intron_retention	FALSE	canonical	3	1189	junction_4	79.3251046152618	935	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCAGTCTGCTTTATT	621	False	NA	NA	False	NA	NA	NA	78915062	78921661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78920303_78920466_78920639_78920952_78921075_78921342
36296	chr10	-	1931	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	50	0	-29	0	multi-exon	FALSE	canonical	3	72	junction_2	11.040380428228	380	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGATTTTACTATAAT	NA	False	NA	NA	False	NA	NA	NA	43777691	43750183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
36297	chr2	+	2012	12	NIC	ENSMUSG00000005881.14	novel	1349	14	NA	NA	-15	-2	intron_retention	FALSE	canonical	3	758	junction_4	75.8357293842399	32	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGACTGGTCTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	155850010	155860195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
36298	chr11	-	2521	6	FSM	ENSMUSG00000019590.17	ENSMUST00000184086.8	1130	6	-14	-1377	-14	-5	multi-exon	FALSE	canonical	3	6	junction_2	71.4898594207598	204	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACCGCTTGCCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	105834979	105824532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_105826394_105826577_105826780_105827007_105827112_105827380_105827480_105828454_105828667_105834936
36299	chr1	-	3533	11	Antisense	novelGene_ENSMUSG00000026280.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	93	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGTCGCTCCGACGGACT	NA	False	NA	NA	False	NA	NA	NA	93715706	93682739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_93682775_93695772_93695873_93695966_93696046_93701489_93701589_93702852_93702955_93703347_93703423_93706006_93706084_93708434_93708628_93712127_93712212_93712473_93713687_93714230
36300	chr4	+	2883	26	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	190.822573088196	1	111	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACCAGAAGAAAGATGGTT	NA	False	NA	NA	False	NA	NA	NA	148642885	148666845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645473_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648043_148648154_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
36301	chr15	+	3037	10	Antisense	novelGene_ENSMUSG00000022614.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTCACCGCTAACCACC	NA	False	NA	NA	False	NA	NA	NA	89235345	89239779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89236090_89236184_89236285_89236356_89236470_89236563_89237157_89237234_89237343_89237412_89237548_89237659_89237807_89238036_89238661_89238768_89239023_89239560
36302	chr1	+	382	1	NIC	ENSMUSG00000073702.12	novel	1049	5	NA	NA	1122	-11	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGAACTGCCTTCAGGG	NA	False	NA	NA	False	NA	NA	NA	39410052	39410434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_39410100_39410400
36305	chr18	-	2434	4	NNC	ENSMUSG00000032905.6	novel	4765	4	NA	NA	3	-2282	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	152.788161263307	8	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACCAGAATAACTTATTG	NA	False	NA	NA	False	NA	NA	NA	46874621	46865492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_46867577_46868321_46868385_46870461_46870575_46874447
36306	chr9	-	2241	1	Intergenic	novelGene_1003	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACTTGAACATTGCAAAT	NA	False	NA	NA	False	NA	NA	NA	30956045	30953804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_30953800_30956000
36307	chr16	-	2147	14	ISM	ENSMUSG00000022962.16	ENSMUST00000023684.14	3518	22	6	8520	6	3699	5prime_fragment	FALSE	canonical	3	1247	junction_13	275.868011489759	10	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTAACCAGGTGGTGATA	NA	False	NA	NA	False	NA	NA	NA	91443834	91426593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
36308	chr8	-	1998	3	Antisense	novelGene_ENSMUSG00000002342.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCGCAACAGGCACAGCG	2552	False	NA	NA	False	NA	NA	NA	70636321	70633865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70633973_70634078_70634173_70634524
36310	chr13	-	3197	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	-33	-813	-2	-2	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	282	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTGTCAACTGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	13568182	13532206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
36311	chr14	-	2932	17	NIC	ENSMUSG00000046753.11	novel	4262	18	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_15	19.957767911267	119	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATCTCTTGTC	7508	False	NA	NA	False	NA	NA	NA	27230435	27204368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27228607_27228673_27230378
36312	chr8	-	3838	2	NNC	ENSMUSG00000096188.2	novel	7734	4	NA	NA	43705	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	89	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAACAAACAAAAGCGCT	NA	False	NA	NA	False	NA	NA	NA	105078734	105074837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_105076861_105076919
36313	chr17	-	2318	5	NNC	ENSMUSG00000095325.4	novel	754	5	NA	NA	-13	1859	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.5916956872407	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTTCCTTTGTCATG	NA	False	NA	NA	False	NA	NA	NA	33110577	33100976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33102251_33102446_33103140_33104676_33104738_33104930_33105058_33110414
36315	chr3	+	4319	13	NNC	ENSMUSG00000028161.18	novel	441	2	NA	NA	50680	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	61.2574258537055	111	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGCAGTCGATGTGAGTA	NA	False	NA	NA	False	NA	NA	NA	136427210	136643481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_136427484_136503413_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136640789
36316	chr6	+	2736	3	ISM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	40207	0	22933	0	3prime_fragment	FALSE	canonical	3	825	junction_2	8.5	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	NA	False	NA	NA	NA	56849250	56856343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_56850498_56852653_56852818_56855018
36317	chr18	-	1712	13	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	-963	143	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1772.58142541386	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCATACTGTTCTGTCAC	5469	False	NA	NA	False	NA	NA	NA	35082140	35071176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075140_35076178_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069
36318	chr14	-	2331	10	ISM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	10	664	6	2	5prime_fragment	FALSE	canonical	3	126	junction_6	20.5666636652858	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCATATTATTTGCTC	NA	False	NA	NA	False	NA	NA	NA	52542575	52532961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
36319	chr11	+	1848	10	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	530.301125730106	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4823979	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833422_4833496_4833725_4833772_4834021_4834122_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
36320	chr2	+	1616	12	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-444	intron_retention	FALSE	non_canonical	0	0	junction_9	306.167755021452	4	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCAACTGGGCTCTTC	NA	False	NA	NA	False	NA	NA	NA	164675725	164681495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679147_164680597_164680651_164680764_164680870_164681070
36321	chr1	+	1608	4	Fusion	ENSMUSG00000053332.14_ENSMUSG00000065228.3	novel	539	9	NA	NA	-41	-2	intron_retention	FALSE	canonical	3	5177	junction_3	264.804749873479	1	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGAACTGTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	160863548	160866100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_160863585_160863777_160863815_160864118_160865118_160865564
36322	chr19	+	2751	7	FSM	ENSMUSG00000034445.9	ENSMUST00000168445.2	1474	7	5	-1282	5	1	multi-exon	FALSE	canonical	3	16	junction_1	29.6516816086748	33	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCTCTTTTGTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	10554822	10567194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
36323	chr8	-	3146	18	FSM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	166	-6	166	6	multi-exon	FALSE	canonical	1	110	junction_3	53.6212528231601	192	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCTGTGGCAAGCAACTG	NA	False	NA	NA	False	NA	NA	NA	86567384	86444200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_86445557_86449259_86449378_86452142_86452226_86452794_86452920_86459001_86459081_86462753_86462798_86464745_86464855_86466856_86467008_86490863_86491037_86493586_86493682_86502768_86502851_86507144_86507207_86537173_86537269_86557811_86557887_86561649_86561708_86562974_86563121_86565556_86565630_86567162
36324	chr17	-	3320	19	NNC	ENSMUSG00000024135.11	novel	3530	21	NA	NA	5957	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	43.9115272135031	1	100	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGGTGTGCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	86446646	86292095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_86292912_86295752_86295944_86307768_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410430_86416654_86416746_86422620_86422718_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437545_86437709_86443591_86443964_86446496
36325	chr16	-	2114	2	Antisense	novelGene_ENSMUSG00000058550.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACATTAAGTAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	48110768	48108532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48109567_48109688
36326	chrX	-	1380	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	-63	1	-5	0	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	2146	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	NA	False	NA	NA	NA	72974461	72965727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
36327	chr16	-	3406	5	FSM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	27	7	27	-7	multi-exon	FALSE	canonical	3	117	junction_1	14.2894191624432	1	90	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTGGATAATTGTATGG	NA	False	NA	NA	False	NA	NA	NA	10131805	10099619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
36328	chr12	-	1300	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2750.28261998579	2	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCCTTAGCCTCGCTGT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111637990_111638199_111638408_111638663
36329	chr1	+	3036	17	FSM	ENSMUSG00000026289.16	ENSMUST00000113186.8	3004	17	-29	-3	-9	0	multi-exon	FALSE	canonical	3	160	junction_8	19.4867743610891	125	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGCGTCTTGATTGTC	7279	False	NA	NA	False	NA	NA	NA	87683768	87720147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
36330	chr9	+	1218	8	NNC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	6539	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	1117.19935918495	14	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACTCTCAGGATTTGA	NA	False	NA	NA	False	NA	NA	NA	64195427	64212070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64203992_64204088_64208323_64208531_64211588
36331	chr2	-	3514	4	ISM	ENSMUSG00000038914.16	ENSMUST00000103055.8	4613	6	-69	4402	-69	-436	5prime_fragment	FALSE	canonical	3	159	junction_3	16.1107279647928	13	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTATTATTAGAGCCATC	NA	False	NA	NA	False	NA	NA	NA	180351861	180327252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_180329591_180330616_180331449_180333656_180333842_180351702
36332	chr10	+	1998	6	FSM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	34	-1	-4	1	multi-exon	FALSE	canonical	3	276	junction_5	14.0427917452336	377	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTTGTGTGGTGCTCAC	124	False	NA	NA	False	NA	NA	NA	77458142	77481828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
36333	chrX	+	2189	5	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.9283223311695	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAGAAGGAAAAAAAGCACT	NA	False	NA	NA	False	NA	NA	NA	133618746	133622651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619115_133619211_133619668_133619742_133620375_133620475_133620782
36334	chr2	-	3920	2	FSM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	41	6	41	-6	multi-exon	FALSE	canonical	3	58	junction_1	0	46	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTACATTCCGGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	163314508	163308304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_163312039_163314322
36335	chr3	-	1357	10	NNC	ENSMUSG00000005625.16	novel	1276	10	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	683.423246117173	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTGCTTCAAATAGTGA	NA	False	NA	NA	False	NA	NA	NA	94949868	94940012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943340_94943938_94944057_94949818
36337	chr2	-	1838	1	Intergenic	novelGene_2612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCGGAGGCCGAAGCCGG	NA	False	NA	NA	False	NA	NA	NA	34694215	34692377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_34692400_34694200
36338	chr14	-	1052	5	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	1022	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1461.06442363094	2	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGCTTTTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	63733566	63729799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731355_63731805_63731897_63733168_63733342_63733438
36339	chr15	+	3129	8	Antisense	novelGene_ENSMUSG00000041815.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGGCCGGAGTCAAGAGCG	NA	False	NA	NA	False	NA	NA	NA	83010185	83033511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83012259_83013396_83013460_83015680_83015811_83016776_83016862_83017352_83017528_83019494_83019591_83022332_83022723_83033394
36341	chr17	-	601	1	Intergenic	novelGene_121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCCCGCAGACCATCTT	NA	False	NA	NA	False	NA	NA	NA	31872155	31871554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_31871600_31872200
36344	chr8	+	3166	23	Antisense	novelGene_ENSMUSG00000110558.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	89	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTACGAAGGAGGGATGCG	NA	False	NA	NA	False	NA	NA	NA	73094839	73175342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_73095369_73099809_73100011_73112151_73112292_73121749_73121833_73122557_73122617_73125529_73125667_73126869_73126919_73127664_73127795_73132839_73132997_73133949_73134151_73134737_73134899_73135259_73135334_73136170_73136256_73136522_73136684_73138613_73138769_73140704_73140935_73143252_73143310_73145731_73145867_73150085_73150160_73150752_73150844_73153489_73153609_73154033_73154078_73175248
36345	chr12	-	2588	3	FSM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	81	5	-8	-2	multi-exon	FALSE	canonical	3	794	junction_2	66.5	556	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGCGATGTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	12991834	12986098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_12987612_12989610_12990488_12991636
36346	chr14	+	2070	10	Fusion	ENSMUSG00000114619.2_ENSMUSG00000094151.2	novel	1761	5	NA	NA	-574554	-338	multi-exon	TRUE	non_canonical	0	0	junction_1	10.4668789787384	41	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	42451530	43045107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_42451655_42452047_42452111_42661890_42662066_43034798_43034871_43035898_43036158_43037369_43037480_43038207_43038371_43039360_43039493_43040175_43040358_43044317
36347	chr12	-	2985	2	FSM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	5	0	5	0	multi-exon	FALSE	canonical	3	257	junction_1	0	200	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGTCTATAGGTTTTT	9172	False	NA	NA	False	NA	NA	NA	80159782	80154527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80157323_80159592
36350	chr3	+	1761	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-2	-15	intron_retention	FALSE	canonical	3	329	junction_1	60.1405760605009	1195	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTTTTTCTGTATAT	7030	False	NA	NA	False	NA	NA	NA	108291152	108295480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291243_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
36351	chr4	+	3306	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	61	366	9	-363	multi-exon	FALSE	canonical	3	201	junction_3	1.24721912892465	507	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGTTGGTATTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	138162042	138169210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
36352	chr11	+	3084	2	FSM	ENSMUSG00000072582.10	ENSMUST00000108022.8	3038	2	-76	30	-76	-30	multi-exon	FALSE	canonical	3	249	junction_1	0	1784	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTGCAATTAAAATCTTA	NA	False	NA	NA	False	NA	NA	NA	86574734	86583253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_86574950_86580384
36353	chrX	-	1918	5	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	16	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	6643.63915241489	4	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTACTTTTGGTTTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	101232926	101228551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101230174_101230960_101231079_101231451_101231978_101232903
36356	chrX	-	2934	14	NNC	ENSMUSG00000031109.17	novel	3167	15	NA	NA	33	-59	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	18.5204189250612	1	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGATGGACTGGGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	48377056	48099393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_48100512_48102373_48102460_48107659_48107769_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
36357	chr16	-	2507	9	NNC	ENSMUSG00000044626.14	novel	2051	9	NA	NA	-16	404	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	63.72781476718	5	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGTGCAATCCATACTT	NA	False	NA	NA	False	NA	NA	NA	21814217	21773732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786939_21794982_21795085_21800085_21800195_21802650_21803019_21814070
36359	chr6	-	1095	8	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1960.00622656237	21	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441374_125449396_125449475_125471536
36360	chr9	-	3766	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	23	-196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	74.7007065264818	1	145	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTATAATAGTATGAG	6437	False	NA	NA	False	NA	NA	NA	44272908	44259420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272010
36361	chr11	+	1501	4	NNC	ENSMUSG00000048277.16	novel	1520	4	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	306.128876274175	2166	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTTGTGCTGGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	117700515	117705108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117700630_117703284_117703523_117703871_117704016_117704103
36362	chr8	-	1591	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	70	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTGATAAGATTA	NA	False	NA	NA	False	NA	NA	NA	14140270	14077559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
36363	chr6	-	1610	9	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	182	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1859.0021138705	17	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9451	False	NA	NA	False	NA	NA	NA	128415458	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407844_128409384_128409416_128410518_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
36364	chr7	-	2799	13	NNC	ENSMUSG00000025512.16	novel	4222	13	NA	NA	0	305	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	61.4265595831496	230	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCTTCTCAGCATCACCC	NA	False	NA	NA	False	NA	NA	NA	141119732	141075655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141111278_141112575_141112887_141119685
36365	chr1	-	1731	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	17	2	combination_of_known_junctions	FALSE	canonical	2	9	junction_9	78.5028111472748	447	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAGGTGTGTGGTTCAT	NA	False	NA	NA	False	NA	NA	NA	194813825	194786101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813367
36366	chr8	+	5443	2	Antisense	novelGene_ENSMUSG00000031523.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	57	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTACGCCTACGTGGAAA	NA	False	NA	NA	False	NA	NA	NA	37055127	37063122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_37059024_37061575
36367	chr5	+	2374	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	15	-5	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	67.6591457232502	37	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTCTAAAACAATGTTAGTA	9214	False	NA	NA	False	NA	NA	NA	110987880	111021994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
36369	chr6	-	1845	12	NNC	ENSMUSG00000029782.21	novel	1718	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	431.683825988228	11	35	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	5	True	NA	NA	False	NA	NA	NA	30509714	30482413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482982_30487369_30487448_30489297_30489390_30489474_30489590_30491085_30491184_30492595_30492682_30501894_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
36372	chr11	+	1462	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	59	-31	multi-exon	FALSE	canonical	0	0	junction_2	980	3	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653678	120655214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120654425_120654465
36373	chr8	+	1431	6	Antisense	novelGene_ENSMUSG00000003814.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	149	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGCGGCCACCGCCGCTT	NA	False	NA	NA	False	NA	NA	NA	85568719	85573498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85569421_85571245_85571412_85571498_85571593_85572488_85572697_85572880_85572981_85573336
36376	chr13	-	3757	5	FSM	ENSMUSG00000021147.18	ENSMUST00000176922.8	3780	5	3	20	3	-20	multi-exon	FALSE	canonical	3	80	junction_4	6.36396103067893	41	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGCTCTTTGACAAACCT	NA	False	NA	NA	False	NA	NA	NA	8921056	8900535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
36377	chr8	-	2299	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	67	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	208.866133512341	27	107	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCACTGTCTGCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	96614953	96590764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597548_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
36378	chr6	-	2696	20	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-50	45	combination_of_known_junctions	TRUE	canonical	3	63	junction_19	266.283459656109	428	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTGTCCTAGAACATCA	NA	False	NA	NA	False	NA	NA	NA	47572325	47507207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47572117
36379	chr7	-	1987	10	Antisense	novelGene_ENSMUSG00000001918.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	576	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTGGCGCCAAGGAGAA	NA	False	NA	NA	False	NA	NA	NA	16532168	16515340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_16515633_16516307_16516399_16519598_16519644_16520273_16520318_16520794_16520836_16523699_16523867_16527575_16527802_16529673_16529878_16529948_16530084_16531426
36380	chr5	-	2057	9	ISM	ENSMUSG00000029512.12	ENSMUST00000200299.2	3581	28	20532	-712	-55	618	3prime_fragment	FALSE	canonical	3	636	junction_8	189.432705729502	2	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCACCCTCCCAACTCAGT	NA	False	NA	NA	False	NA	NA	NA	110937387	110933247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207
36381	chr15	+	2604	4	FSM	ENSMUSG00000022200.9	ENSMUST00000059680.7	2652	4	376	-328	191	2	multi-exon	TRUE	canonical	3	392	junction_2	32.4174164437712	374	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTATTTTATGAGTAT	291	False	NA	NA	False	NA	NA	NA	12321911	12351679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12322043_12339713_12339846_12343122_12343238_12349453
36382	chr10	-	2145	8	Antisense	novelGene_ENSMUSG00000019978.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTAGCTTTTGTTGGGC	NA	False	NA	NA	False	NA	NA	NA	25399417	25364973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_25364990_25377719_25377976_25378050_25378284_25380029_25380156_25382070_25382170_25383672_25383754_25388868_25388978_25398192
36383	chr11	-	1755	7	ISM	ENSMUSG00000020832.15	ENSMUST00000139731.8	2131	9	2421	9	-1991	-9	3prime_fragment	FALSE	canonical	3	182	junction_5	16.1451747177498	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTTATTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	77968788	77964210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_77965001_77965105_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642
36384	chr2	+	3195	14	Antisense	novelGene_ENSMUSG00000101645.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	117	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCCTACCCTAGCTTT	NA	False	NA	NA	False	NA	NA	NA	84432707	84481084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_84433141_84439949_84440066_84440850_84441003_84441106_84441229_84442362_84442436_84443278_84443434_84444231_84444349_84445430_84445619_84446826_84447287_84450261_84450793_84451178_84451331_84452353_84452427_84454613_84454903_84480750
36385	chr14	+	2184	11	NNC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	84	-135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	500.418824585966	4	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACGGTGGTCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	73790289	73833088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73818484_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
36386	chr15	+	1846	11	NNC	ENSMUSG00000023010.16	novel	1148	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	561.48674071611	12	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTGTCTCAGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	99290866	99307928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355_99306428_99306927
36387	chrX	-	2992	6	NNC	ENSMUSG00000071745.2	novel	2862	5	NA	NA	566	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	24.5878018537648	38	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGTAGATGTCTAAGACA	NA	False	NA	NA	False	NA	NA	NA	72192490	72180833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72183280_72185114_72185281_72186333_72186406_72186572_72186670_72186962_72187031_72192347
36388	chr4	+	2924	14	NNC	ENSMUSG00000006215.13	novel	3478	15	NA	NA	-3	-5	intron_retention	FALSE	non_canonical	0	0	junction_2	76.9450737779764	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAATGTTGCCTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	141171991	141194531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174643_141189079_141189287_141189845_141190035_141190577_141190719_141190908_141191107_141191547_141192403_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194157
36389	chrX	+	1080	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-15	68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068794	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13068895_13069107
36390	chr12	+	2167	20	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	63.939159100523	35	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	17398460	17480096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17479864
36391	chr8	+	2387	16	Antisense	novelGene_ENSMUSG00000036550.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	47	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGGGATGCAGTCTAT	NA	False	NA	NA	False	NA	NA	NA	96448231	96467681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_96448266_96449911_96450087_96451139_96451301_96452648_96452822_96454217_96454306_96455236_96455364_96455714_96455874_96457038_96457287_96459695_96459955_96460607_96460777_96460868_96460975_96462310_96462456_96462880_96463076_96466437_96466554_96467355_96467462_96467555
36392	chr1	+	2433	12	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	0	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	308.802699855452	28	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAACCTTTTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	42890435	42944855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934380_42934578_42935252_42935329_42935720_42936637_42937599_42937769_42938600_42938710_42942454_42942625_42944564
36393	chr4	+	2223	5	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	2995	-8	multi-exon	TRUE	non_canonical	0	0	junction_1	197.886804764744	1	131	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAAGTTTGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	147393125	147669647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147393259_147413421_147413566_147596801_147597025_147599034_147599201_147668090
36394	chr4	+	1646	8	FSM	ENSMUSG00000029076.15	ENSMUST00000105579.8	1670	8	22	2	-17	-2	multi-exon	FALSE	canonical	3	37	junction_1	241.738769445576	2255	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTCCTCTCCAGCATG	NA	False	NA	NA	False	NA	NA	NA	156077350	156094665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_156077464_156077609_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
36397	chr9	+	2561	12	NIC	ENSMUSG00000032435.10	novel	2601	13	NA	NA	-6	-1	combination_of_known_splicesites	FALSE	canonical	3	8	junction_9	128.648537811324	479	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTCAGGGTCAAATAACGT	2120	False	NA	NA	False	NA	NA	NA	114517851	114553369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114549616_114549738_114550772_114550926_114552320
36398	chr14	-	1857	10	NNC	ENSMUSG00000006288.9	novel	1842	10	NA	NA	-2	-12	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	267.158065756521	1347	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAATTTACCCTATAG	NA	False	NA	NA	False	NA	NA	NA	51022958	51002883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51003480_51004599_51004745_51009572_51009833_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
36399	chr5	+	2230	11	ISM	ENSMUSG00000029407.11	ENSMUST00000201642.2	2427	12	14474	0	14474	0	3prime_fragment	FALSE	canonical	1	2	junction_1	146.047560746491	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCTCTGTCATTGTTCC	NA	False	NA	NA	False	NA	NA	NA	92300298	92350655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_92300360_92335563_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
36400	chr13	-	2092	7	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	-9	6084	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	62.547093368828	61	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGATTATGATCCAGTGT	NA	False	NA	NA	False	NA	NA	NA	62564866	62544222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62544505_62549971_62551194_62555228_62555290_62555482_62555610_62559530_62559782_62559978_62560013_62564751
36401	chr13	-	1776	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-30	-89	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	648.581583924426	1	55	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334833	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327728_97327787_97330629_97330776_97334533
36402	chr5	-	3417	18	ISM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	579	-3	579	3	3prime_fragment	FALSE	canonical	3	157	junction_7	27.0347719193923	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGTTCAAGCCAGACCT	1528	False	NA	NA	False	NA	NA	NA	36987418	36964261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971
36403	chr15	+	1190	12	ISM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	6	9369	6	7	5prime_fragment	FALSE	canonical	3	1573	junction_6	130.8457548805	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGTGAGCTTAGACTT	NA	False	NA	NA	False	NA	NA	NA	84076447	84092099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033
36404	chr19	-	1549	3	NNC	ENSMUSG00000024742.16	novel	2100	2	NA	NA	-15	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	221.5	13	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2189	False	NA	NA	False	NA	NA	NA	10181273	10176501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177439_10177955_10178462_10181167
36406	chr17	+	3248	13	NIC	ENSMUSG00000002835.10	novel	5535	14	NA	NA	-52	-844	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	134.66406247482	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGCAAATGTGGACATGT	NA	False	NA	NA	False	NA	NA	NA	56347386	56374988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56347552_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
36407	chr10	-	1925	1	NIC	ENSMUSG00000025362.7	novel	681	4	NA	NA	-38	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	76	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGCATCGGAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	128462331	128460406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128460400_128462300
36408	chr8	-	3090	10	NNC	ENSMUSG00000031949.18	novel	3159	10	NA	NA	33	-11	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_9	16.2784413971666	99	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAAATGTGAAGTAGTAA	NA	False	NA	NA	False	NA	NA	NA	112718901	112693550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112695177_112698736_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717020_112718812
36409	chr7	+	859	6	Antisense	novelGene_ENSMUSG00000030541.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCGGCCATTTCTTCTGG	1450	False	NA	NA	False	NA	NA	NA	79744628	79747959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_79744952_79745368_79745460_79745544_79745644_79745769_79745883_79747550_79747700_79747875
36411	chr1	+	3172	8	FSM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	54	1	-12	-1	multi-exon	FALSE	canonical	3	373	junction_7	41.1061344049071	907	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGATGTTTGTATTC	NA	False	NA	NA	False	NA	NA	NA	191553609	191565161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248
36413	chr3	-	2534	14	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_12	211.688953461798	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	NA	False	NA	NA	NA	95662183	95647287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658870_95660318_95660443_95662069
36414	chr14	-	2120	15	NIC	ENSMUSG00000004558.16	novel	2103	15	NA	NA	-16	-7	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	33.5830526988156	266	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACTGAACAGCATTGTTA	9357	False	NA	NA	False	NA	NA	NA	52151570	52142746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52151380
36415	chr13	-	1590	2	NNC	ENSMUSG00000021678.10	novel	2741	2	NA	NA	11847	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACAAGTTCTTTCAGG	9760	False	NA	NA	False	NA	NA	NA	95649888	95648231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_95649358_95649424
36416	chr8	+	2526	14	FSM	ENSMUSG00000031785.17	ENSMUST00000179619.9	3616	14	196	894	194	-873	multi-exon	FALSE	canonical	3	57	junction_6	9.58857801774418	2	72	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTGACACATCCGGCCT	875	False	NA	NA	False	NA	NA	NA	95703930	95739951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95704046_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
36417	chr7	-	3845	12	ISM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	2	37922	2	-18777	5prime_fragment	FALSE	canonical	3	354	junction_8	28.1424945589406	18	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTAGAAATTTGTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	80184865	80142662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336_80164439_80184790
36419	chr17	-	1762	7	NIC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	37	junction_6	25.5907969568923	430	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	NA	False	NA	NA	NA	34219257	34215006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218978_34219167
36420	chr5	+	2038	7	ISM	ENSMUSG00000029221.16	ENSMUST00000202521.4	3272	15	37405	7	12271	-7	3prime_fragment	FALSE	canonical	3	211	junction_1	21.3027123990246	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATTTGTTACGGTAGTT	NA	False	NA	NA	False	NA	NA	NA	67501712	67513122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994_67510109_67511874
36421	chr11	-	1877	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	-2	6	-2	-6	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	21	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCACTCTGTAGGCTCCC	NA	False	NA	NA	False	NA	NA	NA	120508764	120500918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
36422	chr6	-	2464	10	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	0	-24	intron_retention	FALSE	non_canonical	0	0	junction_1	321.033554647916	3	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	9172	False	NA	NA	False	NA	NA	NA	88495810	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482011_88484226_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
36423	chr1	-	3076	12	FSM	ENSMUSG00000025920.20	ENSMUST00000128957.9	3907	12	22	809	3	-4	multi-exon	FALSE	canonical	3	38	junction_10	22.8368268627019	101	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACTTTGATTCATATA	NA	False	NA	NA	False	NA	NA	NA	16589449	16414518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16556243_16556375_16579565_16579633_16589396
36424	chr2	+	2239	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	21	0	-3	0	multi-exon	FALSE	canonical	3	95	junction_2	4.49691252107735	243	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	69620000	69627567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
36425	chr12	-	1317	1	Intergenic	novelGene_4465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTTCCATCACACAGAC	NA	False	NA	NA	False	NA	NA	NA	108644951	108643634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_108643600_108645000
36426	chr10	-	1590	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	-7	0	-7	0	multi-exon	FALSE	canonical	3	299	junction_1	0	838	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGTCTATAAAATTGC	NA	False	NA	NA	False	NA	NA	NA	128047683	128045776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128047261_128047577
36427	chr1	+	2422	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	55	30	-18	-30	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	1	103	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAATAAAATTTAATTTTG	NA	False	NA	NA	False	NA	NA	NA	4878100	4916932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
36428	chr8	+	2859	7	NNC	ENSMUSG00000031641.15	novel	4309	5	NA	NA	6	-939	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	80.7439368208743	623	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATCTTAGAATGATAATG	2573	False	NA	NA	False	NA	NA	NA	61940774	61958789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066_61956879_61957312_61958655_61958724
36429	chrX	+	1658	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	41	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2115.45848694792	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTTTTCCTGTCATAC	NA	False	NA	NA	False	NA	NA	NA	105230809	105247301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235657_105237968_105238118_105238255_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246212_105246458_105246542_105246844
36431	chr9	-	2020	8	NIC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	88	junction_7	43.5097924703891	509	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTCATGTTTGTATTTTT	NA	False	NA	NA	False	NA	NA	NA	27066692	27008682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_27009698_27010007_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
36432	chr10	-	2679	17	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	83	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1739.5262600418	2	151	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCAGTGCTTATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	86541290	86526705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527613_86528003_86528156_86528249_86528329_86529240_86529374_86529777_86530024_86530213_86530492_86531488_86531602_86531703_86531824_86532582_86532700_86534182_86534299_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540165_86540261_86541170
36433	chr11	-	3587	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-12	-20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	302.859239805891	1	228	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAGTAATATAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	40624230	40592241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596722_40596896_40598179_40598277_40598391_40598545_40598841_40598989_40600631_40601099_40604804_40605020_40605537_40605674_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
36434	chr15	-	2945	16	NIC	ENSMUSG00000005125.14	novel	2889	16	NA	NA	0	-6	intron_retention	FALSE	canonical	1	1	junction_15	12.2245654319489	247	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGGCTTGTGTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	66841488	66801172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832465_66841352
36435	chr3	-	2601	20	NNC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	10	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	92.59565691041	3	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTGAGCTGTAGTTTT	NA	False	NA	NA	False	NA	NA	NA	36054748	36013984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030495_36030726_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044344_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
36436	chr6	+	4013	29	FSM	ENSMUSG00000030323.14	ENSMUST00000112925.8	4122	29	88	21	-22	-12	multi-exon	FALSE	canonical	3	30	junction_5	9.69483346522091	60	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCTACTCGTTTTCATCA	NA	False	NA	NA	False	NA	NA	NA	115830518	115903639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893933_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
36437	chr3	-	2611	20	NNC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-402	15705	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	24	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCGGCCGGAGTCCCGGC	-21	True	NA	NA	False	NA	NA	NA	89090002	89072356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89072413_89074340_89074510_89075999_89076230_89076919_89077010_89077355_89077421_89077597_89077717_89080683_89080851_89081503_89081597_89082249_89082378_89082459_89082545_89082695_89082777_89082949_89083037_89085293_89085373_89086396_89086529_89086621_89086744_89087556_89087688_89088035_89088195_89088480_89088582_89089230_89089350_89089604
36438	chr18	-	1632	14	NNC	ENSMUSG00000024370.18	novel	2031	11	NA	NA	2	85	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	303.798126681433	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAATCCTAGCAACCACA	NA	False	NA	NA	False	NA	NA	NA	34784769	34769021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34769221_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
36439	chr16	+	1718	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	4	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1067.59667009597	1	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTGGCTAAATGTTAAT	3491	False	NA	NA	False	NA	NA	NA	20356365	20362657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060_20362363_20362460
36440	chr6	-	1872	11	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	11	0	intron_retention	FALSE	canonical	3	163	junction_10	101.098170112025	160	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	7009	False	NA	NA	False	NA	NA	NA	88818837	88812895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817883_88818750
36441	chr2	+	2483	7	NNC	ENSMUSG00000027479.15	novel	7336	7	NA	NA	62	-4752	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	434.894910677664	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTCCTGTCTTCTGAAAT	NA	False	NA	NA	False	NA	NA	NA	153583255	153610478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153583340_153588175_153588300_153597850_153597997_153599883_153600053_153603455_153603578_153606866_153607020_153608793
36442	chr3	-	2359	18	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	205.465763403044	1	55	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	NA	False	NA	NA	NA	95662185	95647287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653340_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655870_95657650_95657730_95658012_95658078_95658149_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
36443	chr18	+	825	7	ISM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	22	17685	-21	87	5prime_fragment	FALSE	canonical	3	861	junction_5	68.4178339323893	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCATGACATCTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	53309409	53336252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112
36444	chr14	+	1876	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	-33	0	-33	0	multi-exon	FALSE	canonical	3	385	junction_1	0	1307	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	NA	NA	NA	54923639	54928198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_54924578_54927260
36446	chr7	-	3199	15	NIC	ENSMUSG00000025507.14	novel	3263	15	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	20.3766823519794	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACAGAATACCTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	141023269	141018034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021230_141021387_141021443_141021524_141021698_141022063_141022478_141022880
36447	chr2	+	3889	16	Antisense	novelGene_ENSMUSG00000026773.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	81	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCATTCTTTGCGTCCCAGC	NA	False	NA	NA	False	NA	NA	NA	11477489	11506921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_11479355_11485008_11485182_11486056_11486144_11486680_11486746_11486863_11486928_11487255_11487380_11488726_11488847_11489017_11489163_11489465_11489676_11491031_11491154_11493535_11493593_11494480_11494553_11495094_11495166_11497364_11497465_11498711_11498840_11506435
36448	chr5	+	2482	11	FSM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	-191	460	-191	-460	multi-exon	FALSE	canonical	3	226	junction_7	29.6310647800581	649	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGAGACTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	122560315	122582515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352_122579504_122581866
36449	chr2	+	2298	13	FSM	ENSMUSG00000023393.16	ENSMUST00000094218.4	2275	13	-23	0	-23	0	multi-exon	TRUE	canonical	3	124	junction_2	30.6879455161143	493	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	NA	False	NA	NA	NA	180367032	180384073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
36450	chr10	+	2067	8	NIC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	4	72	intron_retention	FALSE	canonical	3	1673	junction_5	37.7272704919864	20	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTAAATTGTGCGCCTT	2293	False	NA	NA	False	NA	NA	NA	79795992	79803517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79803223_79803304
36452	chr3	+	4202	25	NNC	ENSMUSG00000028030.13	novel	6578	26	NA	NA	32	948	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	23.2772764133225	6	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAAAAAGGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	132389992	132545215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_132390156_132392532_132392754_132400143_132400217_132411273_132411389_132413545_132413620_132421349_132421492_132424380_132424442_132426281_132426344_132428066_132428129_132428428_132428578_132430536_132430676_132431421_132431522_132432417_132432468_132432811_132432942_132437926_132438026_132440107_132440171_132440478_132440606_132441834_132441886_132443265_132443350_132448762_132448849_132456947_132456985_132458268_132458431_132480181_132480358_132507264_132507490_132543664
36453	chr3	+	3290	12	FSM	ENSMUSG00000038861.15	ENSMUST00000107251.9	2895	12	80	-475	80	-160	multi-exon	FALSE	canonical	2	3	junction_2	12.4389417848655	90	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTCTTGTTGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	94882266	94913932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94882397_94891293_94892231_94896613_94896659_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
36454	chr5	-	837	3	NIC	ENSMUSG00000029145.13	novel	512	5	NA	NA	-24	176	intron_retention	FALSE	canonical	3	570	junction_2	82.5	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATCTCTCTCCTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	31350382	31348885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31349633_31349925_31349970_31350336
36455	chr18	+	3172	4	Antisense	novelGene_ENSMUSG00000024592.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	150	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATAAAGCCGTGCAAAAA	NA	False	NA	NA	False	NA	NA	NA	57088099	57106558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_57090994_57091594_57091651_57095471_57095591_57106455
36456	chr1	+	2555	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-14	-3	at_least_one_novel_splicesite	FALSE	canonical	3	330	junction_4	508.177450294338	1	130	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATACATGTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	4928022	4968125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959682_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
36457	chr5	+	1757	7	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1557.56283982381	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATATTCTCGCTGTGTGG	764	False	NA	NA	False	NA	NA	NA	77099631	77115350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109093_77112288_77112470_77114093_77114250_77114494
36458	chr3	+	1339	9	NNC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	20	70	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	722.865651418021	14	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGTGTGTGAGTTGAA	4963	False	NA	NA	False	NA	NA	NA	138148892	138161074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160885
36459	chrX	-	1802	8	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-15	0	intron_retention	FALSE	canonical	3	1962	junction_4	96.4504737030929	2323	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	72974438	72965726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72974124_72974319
36460	chr2	+	3016	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	39	975	37	-975	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	5	92	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAAGCTTGAGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	29825476	29849408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
36461	chr13	+	2395	7	FSM	ENSMUSG00000021532.12	ENSMUST00000051784.10	2421	7	24	2	-4	0	multi-exon	FALSE	canonical	3	43	junction_1	41.7053154086303	205	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGTGTGTACTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	68730390	68740455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
36464	chrX	+	2361	19	FSM	ENSMUSG00000031360.15	ENSMUST00000112301.8	3099	19	-289	1027	-24	-21	multi-exon	FALSE	canonical	2	41	junction_1	44.8724185955837	253	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACGCAATTCAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	161684576	161814294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161684911_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
36465	chrX	+	1281	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-17	-54	-17	54	mono-exon	FALSE	NA	NA	NA	NA	NA	5	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068792	13070073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
36466	chr8	-	1844	4	FSM	ENSMUSG00000051176.7	ENSMUST00000209356.2	1744	4	-107	7	-77	-3	multi-exon	FALSE	canonical	3	204	junction_3	1933.09774426667	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43760094	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757595_43759877
36467	chr6	+	2270	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	13	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	175.389309030574	263	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAGAGTTGACAAGAT	-1	True	NA	NA	False	NA	NA	NA	30048013	30145198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
36468	chr3	+	2559	11	ISM	ENSMUSG00000050150.17	ENSMUST00000078568.12	2248	13	-10	3089	-5	1655	5prime_fragment	FALSE	canonical	3	12	junction_9	35.3950561519543	90	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGCAACAGCCTCAAAATA	NA	False	NA	NA	False	NA	NA	NA	135053784	135100499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720
36469	chr8	-	3788	12	NNC	ENSMUSG00000031523.17	novel	6159	14	NA	NA	-16	-633	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.4237977900234	47	91	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCCTATATCTGTACAG	NA	False	NA	NA	False	NA	NA	NA	37081044	37035537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_37036459_37041302_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694_37052122_37053829_37053894_37060530_37060613_37066522_37066595_37080712
36470	chr10	+	2629	13	NIC	ENSMUSG00000019878.9	novel	2430	14	NA	NA	-7	-7	combination_of_known_junctions	FALSE	canonical	3	28	junction_11	71.7650487509221	167	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGAGAAAAATTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	57362513	57389224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57385156_57385211_57387539_57387625_57387998
36471	chr11	+	3611	4	Antisense	novelGene_ENSMUSG00000038615.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	203	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCCCTTGGTAGCTCCG	NA	False	NA	NA	False	NA	NA	NA	96708314	96714609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_96711343_96712079_96712236_96712937_96713147_96714391
36472	chr6	-	2504	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	318.225039272265	1	100	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATTCTTTGTAAGCGTG	3050	False	NA	NA	False	NA	NA	NA	71885732	71857626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858506_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880413_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
36473	chr13	+	1832	9	NIC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	4	-2	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	310.456921327259	42	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGACCAGTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85337557	85361840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345649_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
36474	chr12	+	2529	13	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	8	junction_10	75.9171240381393	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCACCTCTTTGGCTCTT	1849	False	NA	NA	False	NA	NA	NA	84363891	84390492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84385824_84386028_84386875_84387004_84389768
36475	chr10	+	3069	12	NNC	ENSMUSG00000037608.17	novel	3231	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	310.961664879762	1	124	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	2793	False	NA	NA	False	NA	NA	NA	20188217	20216010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205053_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
36478	chr11	-	2615	9	NIC	ENSMUSG00000041654.16	novel	2664	10	NA	NA	2	-8	combination_of_known_splicesites	FALSE	canonical	3	49	junction_7	164.810497238495	1	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCGCATGAGCTGTGTTCC	7771	False	NA	NA	False	NA	NA	NA	113456580	113135686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113452831_113452951_113456501
36479	chr11	-	1936	9	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-419	-3	intron_retention	FALSE	non_canonical	0	0	junction_3	1826.4786988903	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	NA	False	NA	55	True	NA	NA	NA	106677295	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106675186_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676954_106677051
36480	chr9	-	1477	3	ISM	ENSMUSG00000032579.15	ENSMUST00000194260.2	700	4	20	-4	20	2	intron_retention	FALSE	canonical	3	184	junction_2	3	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGGTGAGCCAGTATT	NA	False	NA	NA	False	NA	NA	NA	107206631	107204906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107205272_107205374_107205489_107205633
36481	chr17	+	1579	6	NNC	ENSMUSG00000046711.17	novel	1595	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2204.54993139189	2	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	27775596	27782643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781414_27781926_27781970
36482	chr4	-	1602	4	NIC	ENSMUSG00000003038.16	novel	711	5	NA	NA	3	-14	intron_retention	FALSE	canonical	3	2248	junction_2	397.824081724573	28	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGGCTTGGAATGCTGCC	NA	False	NA	NA	False	NA	NA	NA	133695216	133692062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133692885_133693261_133693358_133693739_133694313_133695105
36484	chr1	+	1715	4	NIC	ENSMUSG00000025967.17	novel	681	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	2982	junction_1	250.515912113826	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216288	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_63216451_63216912_63217725_63217990_63218533_63218616
36485	chr10	-	1284	7	NIC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	-5	18	intron_retention	FALSE	canonical	3	2056	junction_1	109.808419025541	7455	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATGTCACTGTGGTGGCT	NA	False	NA	NA	False	NA	NA	NA	69188745	69174135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_69174427_69176310_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
36486	chr17	-	1027	6	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-217	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821665	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184_35821246_35821461
36490	chr19	+	1141	2	ISM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	-52	2821	15	-2813	intron_retention	FALSE	canonical	3	1451	junction_1	0	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACGCCTTTAATCCCAGC	5961	False	NA	NA	False	NA	NA	NA	8848971	8850207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8849277_8849371
36491	chr19	+	838	5	ISM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	1708	5	1708	3	3prime_fragment	FALSE	canonical	3	1340	junction_4	26.9583011334171	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATATGCCTGGCTCCTT	189	False	NA	NA	False	NA	NA	NA	8850731	8853023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
36492	chrX	+	1446	4	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	999.35123399578	49	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357373	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366055_139374527_139374688_139375917
36493	chr5	+	1384	2	ISM	ENSMUSG00000029432.13	ENSMUST00000137604.2	871	3	2130	-1122	1558	-3	3prime_fragment	FALSE	canonical	3	290	junction_1	0	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGTTGCACGATTGAG	NA	False	NA	NA	False	NA	NA	NA	129831851	129835388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129831990_129834142
36494	chr7	-	3167	8	NIC	ENSMUSG00000019082.19	novel	2546	10	NA	NA	9	0	intron_retention	TRUE	canonical	2	3	junction_7	44.7852016375307	6	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	3514	False	NA	NA	False	NA	NA	NA	141014498	141009661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141014443
36497	chr7	-	1925	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	196	6	15	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8880	False	NA	NA	False	NA	NA	NA	141941579	141929653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
36498	chr9	-	1860	7	NNC	ENSMUSG00000104208.2	novel	347	2	NA	NA	339	30688	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	77	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAACGAGGGCGGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	108215133	108183599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108183742_108192509_108192578_108204778_108204934_108208067_108208189_108212247_108212299_108212344_108212378_108213843
36499	chr4	-	1599	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	798.476950199566	2	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAACTTCTTTTTGTGT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093540_41093777_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
36500	chr7	+	1875	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	255	2362	-75	1090	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	2	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCTTCCAGTGATAGGT	NA	False	NA	NA	False	NA	NA	NA	83541462	83548378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
36501	chr8	-	3562	8	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1130.75851370951	1	113	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAATTGTTTGGGATAT	NA	False	NA	NA	False	NA	NA	NA	94763636	94742123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94743929_94745332_94746321_94749402_94749518_94751169_94751246_94755467_94755553_94757771_94757836_94758929_94759123_94763400
36502	chr3	-	2799	8	NIC	ENSMUSG00000037174.19	novel	2656	9	NA	NA	17914	-2	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	99.0468864441771	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTTGTGGTTTTGGTCT	9116	False	NA	NA	False	NA	NA	NA	51215494	51162653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51207203_51207307_51215470
36504	chr9	-	2982	6	NNC	ENSMUSG00000040722.8	novel	675	6	NA	NA	37	-11	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	60.067961510276	20	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCCTGTATGTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	57375241	57348620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57351148_57352654_57352798_57353354_57353457_57358638_57358768_57359262_57359318_57375215
36505	chr3	+	2184	9	NIC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	0	-288	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	54.2964950526275	77	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATTGTTCTGGTGAA	NA	False	NA	NA	False	NA	NA	NA	57643495	57742252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_57643622_57671677_57671804_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
36509	chr5	-	1548	9	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	6	-440	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	226.339761199839	2500	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	NA	False	NA	NA	NA	124717118	124708715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711869_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124717063
36510	chr11	+	1415	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	73	-27	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GTCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653692	120655218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654599_120654666_120654711_120654753
36511	chr12	-	3438	16	FSM	ENSMUSG00000020954.17	ENSMUST00000169503.4	2791	16	375	-1022	365	1009	multi-exon	FALSE	canonical	3	154	junction_9	54.1091078798713	181	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTGCTCTTGGCCAC	NA	False	NA	NA	False	NA	NA	NA	51738305	51655405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_51657056_51657142_51657230_51666596_51666705_51668562_51668704_51669958_51670127_51673892_51674015_51674295_51674344_51674487_51674664_51676156_51676291_51694776_51694919_51696886_51697014_51699454_51699629_51702184_51702267_51707933_51708008_51708392_51708497_51738204
36512	chr14	-	1575	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-142	-120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1065.57906792504	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTATCACTCCTGAGACT	NA	False	NA	NA	False	NA	NA	NA	63746347	63729915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733160_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
36513	chr2	+	4167	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	44	2	-1	-2	multi-exon	FALSE	canonical	3	103	junction_4	11.7997616501351	189	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGCGTGATGTGCTTGC	1104	False	NA	NA	False	NA	NA	NA	167774290	167821303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
36514	chr19	+	2727	6	Antisense	novelGene_ENSMUSG00000025007.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTCCAGCTCTCCGGAGT	NA	False	NA	NA	False	NA	NA	NA	40560741	40576825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40562816_40566029_40566126_40566214_40566364_40568301_40568523_40573934_40574052_40576755
36515	chr17	+	1994	10	Fusion	ENSMUSG00000072761.11_ENSMUSG00000116564.2	novel	526	4	NA	NA	18	-7	multi-exon	FALSE	canonical	0	0	junction_1	198.734949736863	2	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATTGAAACAAATTTGTC	NA	False	NA	NA	False	NA	NA	NA	17514722	17608009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_17514852_17590167_17590371_17593719_17593892_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
36518	chr3	+	1757	6	NIC	ENSMUSG00000038374.11	novel	2604	6	NA	NA	0	-884	combination_of_known_splicesites	FALSE	canonical	3	54	junction_1	1739.9437462171	1364	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATTGGCCCTTCTCTTC	8642	False	NA	-70	True	NA	NA	NA	96537255	96540223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_96537382_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538885_96539004
36519	chr14	+	1203	8	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	732.930210782412	113	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30288994_30294191_30294288_30295293
36520	chr2	-	2370	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	102	3	-50	-3	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	1	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534883	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
36521	chr4	+	2159	2	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-25378	-19141	at_least_one_novel_splicesite	FALSE	canonical	3	176	junction_1	0	2	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGATGCTTTTCTTGCTGT	6082	False	NA	NA	False	NA	NA	NA	146508101	146535608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146508139_146533486
36522	chr13	-	3117	7	NNC	ENSMUSG00000094870.9	novel	3067	7	NA	NA	426	1	intron_retention	FALSE	canonical	2	8	junction_4	74.3026842643581	21	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120251811	120226721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_120228563_120230241_120230373_120237302_120237986_120239968_120240057_120244307_120244453_120250395_120250498_120251684
36523	chr1	-	2080	1	Antisense	novelGene_ENSMUSG00000046101.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	9993562	9991482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_9991500_9993600
36524	chr1	-	1588	10	Antisense	novelGene_ENSMUSG00000046101.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAACTGTCGGGCGCGCGCG	475	False	NA	NA	False	NA	NA	NA	9991467	9978860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_9978913_9981896_9982036_9982132_9982265_9982336_9982394_9985693_9985893_9986538_9986663_9986773_9986876_9989240_9989369_9990657_9990896_9991050
36525	chr14	+	2028	14	NNC	ENSMUSG00000015971.6	novel	2328	14	NA	NA	1	82	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_13	89.4443068264752	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAACGTGTCATGTAGCC	NA	False	NA	NA	False	NA	NA	NA	29700362	29715258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917_29715103_29715206
36527	chr17	-	1869	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-149	-3	-149	3	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	1882	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGCGAGTCATCACTG	NA	False	NA	NA	False	NA	NA	NA	57318437	57310401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
36528	chrX	-	2210	4	NNC	ENSMUSG00000016534.16	novel	3604	9	NA	NA	17723	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	450.191317355435	1	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	NA	False	NA	NA	NA	37514304	37508383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37509311_37509670_37510724_37513143_37513309_37514239
36529	chr16	+	2628	8	NNC	ENSMUSG00000022721.20	novel	2553	9	NA	NA	1	-3	intron_retention	FALSE	canonical	2	9	junction_4	93.2094415818484	3	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACATTTCTGTGGTGAA	389	False	NA	NA	False	NA	NA	NA	18066866	18071359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18069525_18070005_18070113_18070265_18070342_18070582_18070885_18070963
36530	chr5	+	4013	6	NNC	ENSMUSG00000029177.10	novel	993	7	NA	NA	-3	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	840.543490843871	1	130	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCGTGGCAGTCCCGCCA	9229	False	NA	NA	False	NA	NA	NA	30824283	30831751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30825491_30825654_30827755_30829807_30829915_30830325_30830404_30830636_30830788_30831381
36531	chr17	+	1708	2	ISM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	331	45	331	-45	3prime_fragment	FALSE	canonical	3	385	junction_1	0	4814	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATAAGATATTAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	80532200	80535881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_80533194_80535166
36532	chr4	+	3288	17	FSM	ENSMUSG00000000085.17	ENSMUST00000000087.13	3353	17	63	2	4	-2	multi-exon	FALSE	canonical	3	47	junction_13	8.94776508408664	101	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCCGTGTCTTTTTAACC	NA	False	NA	NA	False	NA	NA	NA	120262566	120387379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_120262654_120304229_120304359_120310440_120310504_120310948_120310973_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385496_120386330
36533	chr11	-	2803	19	NIC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-32	3	combination_of_known_junctions	FALSE	canonical	1	2	junction_17	78.7252606643298	6	6	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGCTTCAGGATGAGC	NA	False	NA	NA	False	NA	NA	NA	117671516	117656810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669988_117670118_117671361
36534	chr6	-	2666	10	ISM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	114	5	44	5	intron_retention	FALSE	canonical	3	189	junction_9	88.6308755387502	3	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGACCTGAGCCTGTTGTT	7078	False	NA	NA	False	NA	NA	NA	88818768	88812900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691
36535	chr1	+	1697	14	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	67	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	182.264454463691	9	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTACTGAAAGCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	131080984	131101204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095919_131101040
36536	chr2	-	4634	11	FSM	ENSMUSG00000027339.16	ENSMUST00000028814.15	8233	11	155	3444	155	-7	multi-exon	FALSE	canonical	1	8	junction_10	8.85494212290515	71	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCGAGCCCCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	131871766	131834778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_131838374_131840164_131840263_131842352_131842475_131843605_131843658_131844801_131844904_131846218_131846380_131847227_131847317_131849285_131849438_131851605_131851682_131854481_131854573_131871670
36538	chr4	+	1264	1	ISM	ENSMUSG00000028284.14	ENSMUST00000037607.11	5773	17	57023	1084	28647	-1084	mono-exon	FALSE	NA	NA	NA	NA	NA	26	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGATTGTTATTTCAGG	5572	False	NA	NA	False	NA	NA	NA	32021119	32022383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_32021100_32022400
36540	chr6	-	4793	5	Antisense	novelGene_ENSMUSG00000034023.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	71	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGCTTCTTGCTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	113540210	113532513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113534260_113534455_113537155_113538664_113538726_113539326_113539450_113540046
36541	chr9	+	3043	14	FSM	ENSMUSG00000009828.16	ENSMUST00000118869.8	2540	14	-503	0	-503	0	multi-exon	FALSE	canonical	2	4	junction_1	29.6118879054586	213	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGGTCTCATTATTT	NA	False	NA	NA	False	NA	NA	NA	78015970	78075220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78016764_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
36542	chr14	+	2080	15	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	0	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	114.179504218899	4	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAACATTCTGGAAATGT	2	True	NA	NA	False	NA	NA	NA	25842606	25887207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25869287_25869351_25870492_25870606_25873201_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
36543	chr3	+	3225	19	NIC	ENSMUSG00000027550.15	novel	3359	19	NA	NA	-24	-19	combination_of_known_junctions	FALSE	canonical	2	3	junction_18	23.3999050330457	11	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAAAAGTCTACATTTAT	NA	False	NA	NA	False	NA	NA	NA	14598914	14637699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605127_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14637463
36544	chr5	-	4880	25	NNC	ENSMUSG00000066621.13	novel	5106	25	NA	NA	-9	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	24.0707507499593	1	178	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAAAATTTATACCACA	NA	False	NA	NA	False	NA	NA	NA	144160385	144131282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144153803_144154160_144154227_144155328_144155567_144160312
36545	chr6	-	2867	11	NIC	ENSMUSG00000004267.17	novel	2795	12	NA	NA	1	-13	intron_retention	FALSE	canonical	3	32	junction_10	9.17660067781093	115	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTACCACCACACTTGG	9954	False	NA	NA	False	NA	NA	NA	124746478	124737030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124738326_124738610_124738670_124739615_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
36546	chr7	-	1821	12	NIC	ENSMUSG00000041560.13	novel	3176	13	NA	NA	-13	3	intron_retention	FALSE	canonical	3	1683	junction_10	114.507858187885	907	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGGGGTCTTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	15680012	15671759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
36547	chr13	-	2078	3	Antisense	novelGene_ENSMUSG00000062822.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACAAACAAAACACAAAG	NA	False	NA	NA	False	NA	NA	NA	119603455	119599370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_119599654_119601098_119602841_119603402
36548	chr11	+	2903	16	NNC	ENSMUSG00000034121.13	novel	688	4	NA	NA	-5012	-5	intron_retention	FALSE	canonical	3	13	junction_1	43.8860139705376	10	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCCTCTGTGGACTCT	1444	False	NA	NA	False	NA	NA	NA	87739028	87754624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87739055_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752945_87753393_87753477_87753566_87753665_87753762
36550	chrX	+	3061	4	NIC	ENSMUSG00000109493.2	novel	744	5	NA	NA	-2216	-2258	intron_retention	FALSE	canonical	3	196	junction_1	12.7540843131393	6	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATTTATGACTTGACCT	6556	False	NA	NA	False	NA	NA	NA	7591005	7594422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7592276_7592436_7593005_7593116_7593326_7593408
36551	chr17	-	1829	4	FSM	ENSMUSG00000024150.13	ENSMUST00000024963.11	2038	4	-6	215	-6	0	multi-exon	FALSE	canonical	3	165	junction_3	69.8108555710038	634	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	NA	False	NA	NA	NA	87573369	87562085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87573262
36552	chr6	+	1613	8	NIC	ENSMUSG00000030225.12	novel	1729	9	NA	NA	-15	-14	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	215.145418311449	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTGCTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	137731528	137814878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137807190_137807304_137813731_137813882_137814113
36554	chr19	+	960	2	NNC	ENSMUSG00000117720.2	novel	545	2	NA	NA	-237	145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACATGAGTATGCTTG	NA	False	NA	NA	False	NA	NA	NA	25470963	25472072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_25471564_25471712
36555	chr4	+	2229	9	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1241.48960426578	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTGTCACTGCAG	19	False	NA	NA	False	NA	NA	NA	40722555	40733898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722634_40723702_40723845_40723981_40724151_40726104_40726210_40727955_40728188_40730172_40730288_40731683_40731800_40732075_40732177_40732727
36556	chr2	+	2951	22	FSM	ENSMUSG00000027655.15	ENSMUST00000109478.9	3284	22	55	278	0	-278	multi-exon	FALSE	canonical	3	62	junction_9	12.5862106454921	13	51	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGAACACAGGCAGCTC	NA	False	NA	NA	False	NA	NA	NA	158636781	158699856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657349_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
36557	chr5	-	2156	16	NIC	ENSMUSG00000029472.14	novel	2404	17	NA	NA	-117	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	549.722289484022	1	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTCTGAAGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	122959198	122925792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
36559	chr11	-	1538	11	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	1167	junction_4	106.079262817951	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190844	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
36560	chr13	+	3110	4	NNC	ENSMUSG00000114516.2	novel	1475	2	NA	NA	-21048	-12762	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	35	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCCCAGAGTCCCTGT	NA	False	NA	NA	False	NA	NA	NA	67187520	67209236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_67190299_67192823_67192916_67200348_67200480_67209127
36561	chr2	+	2780	17	NIC	ENSMUSG00000039205.17	novel	2666	16	NA	NA	23	-16	intron_retention	FALSE	canonical	3	33	junction_3	18.9699598049126	164	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCAGTAGTTTGGCTATG	NA	False	NA	NA	False	NA	NA	NA	32253044	32268293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32253171_32253816_32253992_32254230_32254347_32255814_32255887_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
36562	chr7	-	3920	4	NIC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	28	-1145	combination_of_known_splicesites	FALSE	canonical	1	50	junction_2	3923.91168209593	5	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCCAACTTGCTTCGT	NA	False	NA	NA	False	NA	NA	NA	117715383	117704745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_117708417_117709155_117709242_117714331_117714470_117715358
36563	chr11	-	1995	12	FSM	ENSMUSG00000020863.16	ENSMUST00000166312.8	5244	12	0	3249	0	0	multi-exon	FALSE	canonical	3	40	junction_1	82.4268270539502	697	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	94212784	94181964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94182405_94183752_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
36564	chr8	+	3683	18	FSM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	22	0	-16	0	multi-exon	FALSE	canonical	3	173	junction_3	41.8252254144417	175	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGGTCCTGGTAATGT	961	False	NA	NA	False	NA	NA	NA	123103403	123144099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
36565	chr3	-	1122	9	NNC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-177	3209	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	26	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTACGGCGGTGGCGGC	5081	False	NA	NA	False	NA	NA	NA	89089777	89084852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89084958_89085289_89085373_89086399_89086529_89086621_89086744_89087556_89087688_89088035_89088195_89088480_89088582_89089230_89089350_89089604
36566	chr11	-	3210	9	NNC	ENSMUSG00000010392.9	novel	4289	9	NA	NA	0	-1108	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	87.2273430467763	224	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGTTTCCCATGTGTCC	NA	False	NA	NA	False	NA	NA	NA	76654393	76618535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_76621101_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
36567	chr6	-	3571	8	ISM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	31156	5	-5780	-5	3prime_fragment	FALSE	canonical	3	160	junction_7	13.988333331307	135	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATAGTGTGTCTCATTT	NA	False	NA	NA	False	NA	NA	NA	24633852	24613808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_24616346_24618271_24618381_24619183_24619702_24624234_24624389_24625052_24625096_24626692_24626862_24629923_24629948_24633835
36569	chr8	-	2754	6	Antisense	novelGene_ENSMUSG00000031641.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	61	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCGCGAGGATTAGACGT	NA	False	NA	NA	False	NA	NA	NA	61959725	61940767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_61941024_61942972_61943093_61944576_61944712_61948100_61948235_61956064_61957156_61958707
36571	chr1	+	3626	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	4	-876	4	-6	multi-exon	FALSE	canonical	3	418	junction_1	55.9704063816991	1	171	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTGCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	171975688	172023950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
36574	chrX	+	3463	10	NNC	ENSMUSG00000016409.5	novel	4230	9	NA	NA	-7	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	133.605370632054	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTTGTGTGCCATGAG	NA	False	NA	NA	False	NA	NA	NA	36390440	36414340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443_36413553_36414267
36576	chr16	-	2462	9	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	1646	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	429.548527526285	1	88	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCGGTCCTAAACGTAACC	7912	False	NA	NA	False	NA	NA	NA	38368938	38345516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355181_38358262_38358329_38363199_38363322_38366110_38366241_38368799
36578	chr4	-	2753	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	44	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	186.323038541556	1	102	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAGAAAGGAATA	NA	False	NA	NA	False	NA	NA	NA	115980812	115954186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967950_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980182_115980258_115980514_115980724
36579	chr13	-	1765	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	27	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	865.943730492171	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGAATCTTTCTATCCC	NA	False	NA	NA	False	NA	NA	NA	97334838	97312930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313658_97314409_97314557_97315847_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
36580	chr5	+	4604	18	ISM	ENSMUSG00000037210.17	ENSMUST00000180376.8	5536	21	50865	25	-5539	-25	3prime_fragment	FALSE	canonical	3	55	junction_1	12.6069130264059	100	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAATACATTAGTACAG	4263	False	NA	NA	False	NA	NA	NA	34578141	34643775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_34578296_34583610_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34597691_34597935_34600644_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
36581	chr5	+	3218	5	NIC	ENSMUSG00000029464.11	novel	1592	8	NA	NA	6	-13	intron_retention	FALSE	canonical	3	429	junction_4	35.1176593753057	3	151	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAGAAGAAAACTGTGTT	8121	False	NA	NA	False	NA	NA	NA	122510595	122520952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122519369_122519460
36582	chr11	+	1656	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-401	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4060.57933797629	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACTTGAAGCTAATTTGT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646395_75646507_75647642_75647850_75650117_75650255_75655445
36583	chr19	-	1959	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	10	-708	10	690	multi-exon	FALSE	canonical	3	269	junction_5	15.3310143173894	1457	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCCCTCACTCTTCACTG	3912	False	NA	NA	False	NA	NA	NA	4171565	4163755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
36584	chr16	-	1759	7	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	-3	709	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	784.733164132171	2	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGAATGAATGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	22084679	22064488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067811_22073157_22073321_22073733_22073868_22084490
36585	chr4	+	1777	6	NIC	ENSMUSG00000028797.21	novel	1366	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	299.030834530488	793	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3164	False	NA	NA	False	NA	NA	NA	129494460	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129494525_129494775_129495037_129495199_129495419_129495987_129496055_129500879_129500973_129501248
36586	chr7	+	1422	8	Antisense	novelGene_ENSMUSG00000030697.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	528	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCGAACCCCGCGGGC	NA	False	NA	NA	False	NA	NA	NA	126385037	126391532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126385464_126385543_126385734_126386391_126386519_126386608_126386781_126387286_126387389_126387553_126387605_126388193_126388248_126391232
36587	chr18	-	1824	5	NNC	ENSMUSG00000024587.11	novel	1784	15	NA	NA	-320	2	intron_retention	FALSE	non_canonical	0	0	junction_2	2075.15136496112	1	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTATGGTCTGACATCCA	NA	False	NA	NA	False	NA	NA	NA	64638441	64633286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64634506_64634814_64634886_64637424_64637545_64637918_64638119_64638227
36588	chr8	+	2843	19	FSM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	226	0	213	0	multi-exon	FALSE	canonical	3	368	junction_15	41.1869046070606	173	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7587	False	NA	NA	False	NA	NA	NA	111345456	111447030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
36590	chr12	+	3759	12	NNC	ENSMUSG00000035142.19	novel	2987	11	NA	NA	-1	1063	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	70.6605200299934	664	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAGAAATCTGTATAT	NA	False	NA	NA	False	NA	NA	NA	52144542	52360590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484_52357820_52358087
36591	chr11	-	1848	13	FSM	ENSMUSG00000018697.15	ENSMUST00000018841.3	1822	13	-35	9	-35	-9	multi-exon	FALSE	canonical	3	481	junction_8	26.3136793744665	834	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTTGTCACTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	84404383	84313689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
36593	chr10	+	2155	8	ISM	ENSMUSG00000006724.13	ENSMUST00000165764.8	2380	9	811	3	390	-3	3prime_fragment	FALSE	canonical	0	0	junction_1	1.49829835452879	10	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTCTTTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	126884929	126888835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_126885125_126885548_126885752_126885837_126886039_126886110_126886284_126886546_126886717_126886918_126886998_126887381_126887580_126887899
36594	chr5	+	2030	14	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-6	555	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	274.210237660576	289	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTTGTGGTAAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	31652104	31668758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31660859_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
36595	chr11	-	2755	12	NNC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	31	-17	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_9	27.8256080402552	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATATTAAGGCACAATCT	NA	False	NA	NA	False	NA	NA	NA	121563948	121507039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121561695_121561796_121561882_121562000_121563806
36596	chr12	-	1718	9	NIC	ENSMUSG00000021266.17	novel	2764	10	NA	NA	29	-907	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	645.452058153818	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTGCGTGTGCCCGGTT	NA	False	NA	NA	False	NA	NA	NA	108854314	108826866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854237
36597	chr4	+	2211	6	NNC	ENSMUSG00000034042.17	novel	3588	12	NA	NA	-515	-137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	139.750635061169	3	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGTGGATTCTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	116414339	116450942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116414477_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431756_116450351
36599	chr3	+	626	4	ISM	ENSMUSG00000015714.12	ENSMUST00000154055.8	624	5	7	120	7	-120	intron_retention	FALSE	canonical	3	434	junction_2	26.0810701893581	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACCTAATTGCCTTTGTT	4508	False	NA	NA	False	NA	NA	NA	95222584	95228514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252
36600	chr17	+	2011	5	NIC	ENSMUSG00000038880.14	novel	1884	6	NA	NA	23	-11	intron_retention	FALSE	canonical	3	183	junction_4	205.257612526308	801	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAAACCCTTGTGCGCT	NA	False	NA	NA	False	NA	NA	NA	25114131	25116465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25114679_25114761_25115733_25115825_25115928_25116001_25116115_25116187
36601	chr1	+	1826	13	NIC	ENSMUSG00000033793.13	novel	2049	14	NA	NA	0	29	combination_of_known_splicesites	FALSE	canonical	2	7	junction_3	155.225284309255	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCTTAAATTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	5153354	5232671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_5153502_5154639_5154787_5159231_5159335_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
36602	chr4	-	2498	13	NNC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	330.65952613258	1	114	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122779657	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122753963_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779625
36603	chr19	+	2377	1	Intergenic	novelGene_1247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAAAAGTGGTTGTGCC	5809	False	NA	-99	True	NA	NA	NA	31091356	31093733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_31091400_31093700
36604	chr11	-	4007	6	NNC	ENSMUSG00000041920.15	novel	4219	6	NA	NA	-1382	-6	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	8.20731381147328	93	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAAGAGTCTGATGTTCT	1188	False	NA	NA	False	NA	NA	NA	109365806	109341686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
36605	chr8	+	1780	12	NIC	ENSMUSG00000003808.19	novel	1826	13	NA	NA	6	0	intron_retention	FALSE	canonical	3	23	junction_2	188.21475337611	2	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	NA	False	NA	NA	NA	85583654	85595886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
36606	chr11	-	3683	11	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	65	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	363.10137702851	2	198	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGAGTCCATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	88755347	88721619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723192_88723965_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731999_88732129_88735084_88736692_88755222
36608	chr7	-	1446	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	37	642	8	-272	multi-exon	FALSE	canonical	3	296	junction_6	379.595691346581	21	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTCAGTCCTGCCAGCC	NA	False	NA	NA	False	NA	NA	NA	78798771	78784158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
36609	chr13	-	1438	4	ISM	ENSMUSG00000041431.17	ENSMUST00000134080.2	1075	5	735	-868	155	6	3prime_fragment	FALSE	canonical	3	3468	junction_3	262.216619525833	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAATTCTCATTTGCCC	NA	False	NA	NA	False	NA	NA	NA	100917806	100915248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665
36610	chr17	+	3935	8	NNC	ENSMUSG00000036552.20	novel	1342	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	36.9390010140822	1	85	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	15273102	15284485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15273346_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15281587
36611	chr8	-	1208	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	-48	-2	-38	0	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	29	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321154	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
36612	chr11	+	2374	1	Antisense	novelGene_ENSMUSG00000020740.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAGAGGCCCAGGACCA	3339	False	NA	NA	False	NA	NA	NA	115479313	115481687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115479300_115481700
36614	chr16	-	2243	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	52	0	-1	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	4	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	55850050	55835868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
36615	chr2	-	1997	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_10	14.3488675511345	125	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	59712927	59682707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
36616	chr11	+	3184	14	FSM	ENSMUSG00000025372.17	ENSMUST00000075180.12	3518	14	329	5	-24	-5	multi-exon	FALSE	canonical	2	3	junction_13	10.9230769230769	39	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCACTGAGTTGGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	119833917	119893442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119891899
36617	chr5	+	3685	7	NNC	ENSMUSG00000029438.10	novel	4718	6	NA	NA	-10	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	11.852097798374	4	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCATGAGTTTGGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	123482552	123512137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_123482785_123489929_123490012_123494003_123494101_123499253_123499422_123507395_123507518_123509080_123509227_123509299
36618	chr10	-	1827	8	NIC	ENSMUSG00000019813.17	novel	1949	10	NA	NA	23	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_7	71.247771178888	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	NA	False	NA	NA	False	NA	NA	NA	41621904	41594841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41621766
36620	chr3	-	3675	4	FSM	ENSMUSG00000053870.8	ENSMUST00000194095.2	875	4	-5	-2795	-5	-6	multi-exon	FALSE	canonical	3	7	junction_3	10.0332779621949	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAGTAGAAATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	154798839	154790560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_154793707_154795748_154795842_154797027_154797196_154798571
36621	chr14	-	1777	15	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	324.743383775748	1	53	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30740989	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735660_30735970_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740881
36622	chr13	+	3911	7	Intergenic	novelGene_1461	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	147	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGGAAAAGGACTCGCTA	NA	False	NA	NA	False	NA	NA	NA	67217488	67256623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_67219595_67222151_67222244_67222894_67223023_67245855_67247115_67250108_67250202_67250765_67250888_67256512
36623	chr1	-	1353	10	Antisense	novelGene_ENSMUSG00000116048.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCGAACAGATGGCGTCAT	NA	False	NA	NA	False	NA	NA	NA	93431581	93406726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_93406789_93416843_93416875_93418876_93418999_93423299_93423386_93425060_93425186_93426732_93426868_93426993_93427112_93428178_93428280_93429226_93429375_93431156
36624	chrX	-	1744	10	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	7	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	637.756677932041	263	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72830221	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823733_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826276_72826323_72830133
36625	chr8	-	2012	9	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38822	-1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_8	76.9487451164735	118	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	43633345	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43597362_43597564_43633233
36626	chr7	+	2350	17	Antisense	novelGene_ENSMUSG00000078762.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCAGCTTCCCGCACTC	NA	False	NA	NA	False	NA	NA	NA	30353179	30364375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30353484_30353597_30353728_30355276_30355361_30356371_30356504_30356587_30356695_30357017_30357172_30357264_30357343_30357926_30358415_30358491_30358554_30358715_30358842_30358966_30359025_30359520_30359601_30359682_30359751_30361052_30361216_30361294_30361420_30362636_30362711_30364258
36627	chr10	+	1286	15	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	663.243529626816	18	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	NA	False	NA	NA	NA	111309118	111332745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111326260_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
36630	chr9	+	3177	20	NIC	ENSMUSG00000032212.11	novel	3755	21	NA	NA	18	1	combination_of_known_splicesites	FALSE	canonical	3	20	junction_6	70.7250930092244	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTGCTAATGTATTGAGAA	NA	False	NA	NA	False	NA	NA	NA	70450197	70499515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
36631	chr9	+	1855	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	248	94	-62	-94	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTGGGGGGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	108183575	108215039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
36632	chr17	+	2109	8	Antisense	novelGene_ENSMUSG00000024197.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTGATCTGTGAACCTT	975	False	NA	NA	False	NA	NA	NA	56585977	56594952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_56586142_56586199_56587073_56587737_56587868_56588406_56588613_56591136_56591429_56593210_56593298_56593448_56593649_56594795
36633	chr7	-	1961	18	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	4	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	477.376538868001	1	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACACCTAGAGGAGGCA	NA	False	NA	NA	False	NA	NA	NA	33929710	33901601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920327_33926542_33926663_33928352_33928422_33928707_33928799_33929516
36634	chr14	-	2096	9	ISM	ENSMUSG00000042354.8	ENSMUST00000226740.2	1765	15	2739	0	651	0	3prime_fragment	FALSE	canonical	3	793	junction_8	94.0743555651592	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30738236	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231
36636	chr4	-	2150	7	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	21	-10	intron_retention	FALSE	canonical	2	10	junction_6	42.93276397138	22	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATTTGACCAACTTCA	1994	False	NA	NA	False	NA	NA	NA	116664782	116661218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116664002_116664664
36637	chr4	+	4548	18	FSM	ENSMUSG00000059810.19	ENSMUST00000098031.10	2072	18	-80	-2396	-80	-5	multi-exon	FALSE	canonical	3	19	junction_17	16.975863182644	29	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCCCTCCGACTCCTGT	NA	False	NA	NA	False	NA	NA	NA	62501757	62578072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525845_62525915_62533537_62533599_62534710_62534802_62535311_62535368_62542081_62542164_62543333_62543440_62543978_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62575339
36639	chr4	+	1234	8	NNC	ENSMUSG00000040945.14	novel	3767	13	NA	NA	-902	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1637.88826211792	6	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGCTTTCATGATTCCT	NA	False	NA	NA	False	NA	NA	NA	140440759	140450531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410_140448572_140450128
36640	chr19	-	5248	23	NNC	ENSMUSG00000025006.19	novel	2582	24	NA	NA	-2	2709	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	20.7665099110153	62	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCTCTGTGTTCTCTTC	9901	False	NA	NA	False	NA	NA	NA	40502182	40280487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353599_40358129_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
36641	chr11	-	2233	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-4	-8	intron_retention	FALSE	canonical	3	184	junction_6	81.3758000472704	110	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAGCACTCTGTAGGCTC	NA	False	NA	NA	False	NA	NA	NA	120508743	120500920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
36642	chr14	-	2076	9	ISM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	38	3	-31	-3	intron_retention	FALSE	canonical	3	118	junction_2	9.25928587959136	327	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGAGAGTCTGAGGTGT	NA	False	NA	NA	False	NA	NA	NA	56026276	56022456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694
36643	chr2	+	1432	12	NNC	ENSMUSG00000027374.13	novel	718	5	NA	NA	-99	129	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	399.254304923566	27	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	7087	False	NA	NA	False	NA	NA	NA	127432261	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127432322_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
36644	chr5	-	1879	1	NIC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	-80	1291	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGGAATACAGACATAG	8193	False	NA	NA	False	NA	NA	NA	122944494	122942615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122942600_122944500
36645	chr7	+	1949	1	FSM	ENSMUSG00000077711.3	ENSMUST00000104523.3	125	1	-759	-1065	-759	1065	mono-exon	FALSE	NA	NA	NA	NA	NA	48	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTTGTGTTGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	28050173	28052122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28050200_28052100
36646	chr9	-	242	1	FSM	ENSMUSG00000076138.3	ENSMUST00000102184.3	108	1	-59	-75	-59	75	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	NA	False	NA	NA	False	NA	NA	NA	78385976	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78385700_78386000
36647	chr5	+	1362	1	FSM	ENSMUSG00000061118.9	ENSMUST00000071263.7	1661	1	40	259	40	-259	mono-exon	FALSE	NA	NA	NA	NA	NA	504	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACAAAGGC	3172	False	NA	NA	False	NA	NA	NA	135093095	135094457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135093100_135094500
36648	chr7	+	3367	32	FSM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	-642	-1	136	0	multi-exon	FALSE	canonical	3	103	junction_17	22.4346431975332	388	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	NA	False	NA	NA	False	NA	NA	NA	28681610	28702704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
36650	chr7	-	3351	3	FSM	ENSMUSG00000030669.14	ENSMUST00000205933.2	458	3	-32	-2861	19	-2	multi-exon	FALSE	canonical	3	87	junction_2	4	24	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGAGTCTTTGCTGTTA	2053	False	NA	NA	False	NA	NA	NA	114235573	114230714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114233844_114234361_114234457_114235446
36652	chr3	-	3051	4	NNC	ENSMUSG00000038256.16	novel	4652	7	NA	NA	5019	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.391054470859	6	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTGCCTTTTTGTGCC	NA	False	NA	NA	False	NA	NA	NA	97116306	97110978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_97112716_97112753_97113294_97114462_97114724_97115793
36653	chr13	-	2325	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	10	0	10	0	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	549	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGTCTAAAGTTACTA	NA	False	NA	NA	False	NA	NA	NA	54616652	54606649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
36654	chr13	+	2343	21	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	7	33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	240.878076005269	1	75	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGCTGCCC	1316	False	NA	NA	False	NA	NA	NA	59733214	59782599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59755998_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780847_59782231
36655	chr13	+	2595	6	Antisense	novelGene_ENSMUSG00000025871.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATCCACCTGCCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	54700463	54711434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_54700634_54700713_54700851_54701010_54701118_54704339_54704465_54707010_54707140_54709507
36657	chr12	-	4056	12	ISM	ENSMUSG00000036523.17	ENSMUST00000048064.16	7940	33	60482	66	-5957	-66	3prime_fragment	FALSE	canonical	1	2	junction_2	3.11222595793158	8	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAGTTAATTTAAATGAA	6554	False	NA	NA	False	NA	NA	NA	16746760	16720681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_16722545_16723746_16723886_16724610_16724812_16727688_16727825_16730200_16730420_16731330_16731506_16732128_16732334_16734362_16734525_16738497_16738641_16740759_16740919_16742685_16742789_16746209
36658	chr7	-	1490	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	85	1334	7	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	2380	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGTCTTGAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	99508099	99488109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
36660	chr8	+	2863	3	FSM	ENSMUSG00000089857.10	ENSMUST00000110002.8	3152	3	-2	291	-2	-291	multi-exon	FALSE	canonical	2	4	junction_2	2.5	17	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGGCACATTTGTAGG	NA	False	NA	NA	False	NA	NA	NA	72662449	72669907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72662583_72666965_72667093_72667304
36661	chr12	+	3070	10	NIC	ENSMUSG00000021235.14	novel	1583	12	NA	NA	0	-3	intron_retention	FALSE	canonical	2	3	junction_5	73.4166193719106	4	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGAACTTGTGTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	84408816	84420559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84409012_84413658_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418177_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
36663	chr9	+	1287	8	FSM	ENSMUSG00000032279.12	ENSMUST00000214136.2	1570	8	99	184	99	-184	multi-exon	FALSE	canonical	3	1827	junction_2	68.917874817697	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAACTGGGAATAAA	NA	False	NA	NA	False	NA	NA	NA	54502476	54511036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
36664	chr16	+	1720	8	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	9	-4	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_4	224.997687062942	83	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	48104158	48114596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48110169_48110476_48111376_48111678_48113273_48113470_48114061
36665	chr11	-	3002	7	NIC	ENSMUSG00000001034.18	novel	3019	7	NA	NA	36	-5	intron_retention	FALSE	canonical	3	13	junction_4	77.5234731477434	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCTGCGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	61385056	61379642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383675_61383896_61384472_61384781_61384905
36666	chr15	-	1240	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	12082.7250278555	8	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3576	False	NA	NA	False	NA	NA	NA	79967549	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964574_79964754_79965096_79965233_79965815_79965967_79966612_79966784_79967524
36668	chr1	+	2197	6	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	610.127986573309	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGCGAGTCATCGAGT	NA	False	NA	NA	False	NA	NA	NA	180720672	180726670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014_180725606_180725817_180726307_180726372
36669	chr6	-	2459	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	102	-5	102	5	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	1	139	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8587	False	NA	NA	False	NA	NA	NA	145021808	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
36672	chrX	-	4049	20	NIC	ENSMUSG00000103436.2	novel	5727	17	NA	NA	1	-365	combination_of_known_splicesites	TRUE	canonical	1	3	junction_3	82.9390190828574	14	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGGTCGTGCATATTT	NA	False	NA	NA	False	NA	NA	NA	7471619	7425205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7427123_7430100_7430181_7430474_7430528_7460264_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
36673	chr9	-	2536	1	Genic_Genomic	ENSMUSG00000032311.18	novel	NA	NA	NA	NA	20866	1162	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTAAGAGCTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	55128879	55126343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_55126300_55128900
36674	chr9	+	1018	1	NIC	ENSMUSG00000000088.8	novel	1818	4	NA	NA	6692	-1603	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACATTGATGCCTGGGAA	7123	False	NA	NA	False	NA	NA	NA	57435307	57436325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57435300_57436300
36675	chr6	-	2634	20	NNC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-22	42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	312.240300954515	73	56	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCACTTGTCCTAGAACA	NA	False	NA	NA	False	NA	NA	NA	47572297	47507210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509912_47510700_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47572117
36676	chr7	-	1008	9	Antisense	novelGene_ENSMUSG00000030512.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5318	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCGCCAGTGCCGTGTC	NA	False	NA	NA	False	NA	NA	NA	65724325	65710315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_65710439_65711869_65712019_65713513_65713593_65718913_65718960_65719169_65719275_65719866_65719947_65720337_65720412_65720977_65721070_65724065
36677	chr9	-	3251	9	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	29.0376910239089	266	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGATTGTTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	114762908	114728408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114730448_114731440_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
36678	chr4	+	2231	9	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	26	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1224.31736081786	1	100	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGTCTAATATACTGATT	19	True	NA	NA	False	NA	NA	NA	40722505	40733870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722591_40723680_40723845_40723972_40724151_40726104_40726210_40727955_40728180_40730172_40730288_40731683_40731800_40732075_40732177_40732727
36679	chr1	-	632	1	FSM	ENSMUSG00000100690.2	ENSMUST00000191094.2	336	1	-67	-229	-67	229	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCAAAAAAAAAAATTAGCAG	NA	False	NA	NA	False	NA	NA	NA	150145079	150144447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_150144400_150145100
36680	chr2	+	3561	11	NNC	ENSMUSG00000026977.18	novel	2271	11	NA	NA	17	77	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	111.343118332477	1	124	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACAATGGTTCTATTTTC	NA	False	NA	NA	False	NA	NA	NA	60040273	60079632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233_60078339_60078405
36681	chr13	-	2979	9	NNC	ENSMUSG00000035834.12	novel	3054	8	NA	NA	18	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	90.9996565927586	64	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGATTTGCAGTGAACATT	NA	False	NA	NA	False	NA	NA	NA	81859103	81821959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81822640_81822687_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
36683	chr4	+	2720	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	21	51	21	-51	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTACCAAGCCAGGATTATA	NA	False	NA	NA	False	NA	NA	NA	99082404	99147969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
36684	chr8	-	414	1	NIC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	727	-1180	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAACCAAGTGCCTTCATT	NA	False	NA	NA	False	NA	NA	NA	85570818	85570404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85570400_85570800
36685	chr15	+	2618	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	65.1689163199833	183	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	84921382	84947031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_84921446_84922972_84923166_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
36686	chr15	-	2893	19	FSM	ENSMUSG00000078937.9	ENSMUST00000109313.9	2895	19	2	0	2	0	multi-exon	FALSE	canonical	3	54	junction_15	11.4655953418569	119	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCTCCATGGGACTAC	5218	False	NA	NA	False	NA	NA	NA	89310064	89300607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89301183_89301347_89301441_89302034_89302149_89302934_89303088_89303178_89303314_89303393_89303559_89304094_89304212_89304290_89304397_89304894_89305081_89305547_89305744_89306327_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919_89309060_89309390_89309551_89310000
36687	chr11	-	2031	9	NNC	ENSMUSG00000018428.16	novel	3721	11	NA	NA	246	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	299.643094989689	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGAGTCCATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	88732120	88721619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730658_88731994
36688	chr7	-	3072	6	FSM	ENSMUSG00000030452.17	ENSMUST00000117812.8	3039	6	-32	-1	-3	1	multi-exon	FALSE	canonical	3	17	junction_5	82.412620392753	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGGTTTCCCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	55612219	55581033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611947
36690	chr11	-	953	1	Intergenic	novelGene_2477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	407	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGCCAACGCAGACCAAGC	6139	False	NA	NA	False	NA	NA	NA	98581084	98580131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_98580100_98581100
36692	chr11	+	2699	3	NNC	ENSMUSG00000020346.17	novel	3151	4	NA	NA	234	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	45.5	134	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATAAGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	49136291	49153849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_49136445_49142407_49142502_49151397
36694	chr8	-	2381	7	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	-101	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	194.263280684287	62	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	NA	False	NA	NA	NA	11685137	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
36695	chr7	-	2621	6	NIC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	9	-19013	intron_retention	FALSE	canonical	3	155	junction_1	19.179155351579	10	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGTCTCTTCAGCCGTAA	NA	False	NA	NA	False	NA	NA	NA	29979835	29968259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
36696	chr10	+	3532	21	Antisense	novelGene_ENSMUSG00000032834.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCACTTCCGGAATACAAA	NA	False	NA	NA	False	NA	NA	NA	78007058	78020952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_78007969_78009214_78009289_78009405_78009558_78009666_78009888_78010765_78010827_78011315_78011428_78012085_78012234_78012788_78012971_78013583_78013733_78013997_78014144_78014254_78014409_78014792_78014934_78015550_78015620_78015959_78016100_78016878_78017113_78017344_78017478_78018213_78018364_78018456_78018556_78018778_78018875_78019891_78020005_78020904
36697	chr9	-	2237	5	Antisense	novelGene_ENSMUSG00000111424.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTTCTAAATCCACCCC	NA	False	NA	NA	False	NA	NA	NA	22151294	22137018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_22137128_22146314_22146439_22147317_22147589_22148968_22149245_22149837
36698	chr7	+	1109	3	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATCGCTGGGTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	110671142	110673409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673243
36699	chr4	+	2106	7	NIC	ENSMUSG00000009863.15	novel	1142	8	NA	NA	-5	-4	intron_retention	FALSE	canonical	3	2820	junction_2	217.490038086039	46	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAGGCGTTACTCTCCA	NA	False	NA	NA	False	NA	NA	NA	140688706	140706500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140704812_140706335
36701	chr13	+	2332	17	NNC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	51	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	56.2943922051744	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTAGTTTGCATTCT	4840	False	NA	NA	False	NA	NA	NA	38221322	38245404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243964_38244069_38244730
36702	chr16	+	2617	3	FSM	ENSMUSG00000086965.2	ENSMUST00000146673.2	865	3	-21	-1731	-21	1731	multi-exon	FALSE	canonical	3	20	junction_2	96	173	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTACTGCATACTTTGG	NA	False	NA	NA	False	NA	NA	NA	18317629	18322139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18317702_18317795_18317891_18319689
36703	chr9	+	728	3	NIC	ENSMUSG00000041506.16	novel	1611	14	NA	NA	181	-2	intron_retention	FALSE	canonical	3	1393	junction_1	40	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCCCTTGTTCCTCTG	NA	False	NA	NA	False	NA	NA	NA	106361233	106362619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_106361719_106362275_106362350_106362450
36704	chr18	+	1819	2	NNC	ENSMUSG00000057561.11	novel	2165	3	NA	NA	-15	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTATATCATGAGAGGCT	NA	False	NA	NA	False	NA	NA	NA	46730806	46742310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730879_46740563
36705	chr2	+	1883	4	NNC	ENSMUSG00000074578.15	novel	525	4	NA	NA	1	-9	intron_retention	TRUE	non_canonical	0	0	junction_2	427.112007167519	53	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATATTTATCTGCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	166905141	166907773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166905218_166905555_166906362_166906566_166907401_166907606
36706	chr5	+	2422	12	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	12	768	intron_retention	FALSE	canonical	0	0	junction_10	297.639445755131	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGGTCCATTCCGTC	NA	False	NA	NA	False	NA	NA	NA	31652122	31668971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31666592_31666751_31668175
36707	chr7	+	1880	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	256	2356	-74	1096	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	2	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	NA	False	NA	NA	NA	83541463	83548384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
36708	chr5	-	3023	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	40	178	-18	-10	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	4	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGCTTGAATGAGCGACA	NA	False	NA	NA	False	NA	NA	NA	64126200	64066417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
36709	chr6	+	1651	11	NNC	ENSMUSG00000068328.11	novel	1265	11	NA	NA	-3	0	intron_retention	FALSE	canonical	3	56	junction_7	319.708367109777	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5403	False	NA	NA	False	NA	NA	NA	83031691	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83031814_83031891_83032030_83032109_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033767_83033860_83033958_83034075_83034256_83034376_83034478
36710	chr15	-	4464	16	NIC	ENSMUSG00000022335.18	novel	4388	16	NA	NA	-24	31	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	5.94194132137525	41	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTGGGTGAAATAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	68130729	67955581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_67956411_67973319_67973451_67976804_67976929_67982325_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565_68053008_68056269_68056421_68058899_68059086_68084441_68084694_68096615_68096793_68130516
36711	chr15	+	828	3	FSM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	19	24	-1	-24	multi-exon	FALSE	canonical	3	479	junction_2	8	966	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAAGGTCTGTATTGTA	NA	False	NA	NA	False	NA	NA	NA	72962259	72965900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_72962433_72964681_72964809_72965372
36712	chr6	-	2066	9	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-799	-1	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	314.816116963538	2	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAATTCTTTGTAAGCGT	NA	False	NA	NA	False	NA	NA	NA	71867462	71857627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573
36713	chr5	-	1815	6	NNC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	6	11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	751.358130321353	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAGAAATATACCTGTTA	NA	False	NA	NA	False	NA	NA	NA	30278606	30266966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30267696_30267922_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
36715	chr16	-	2833	4	ISM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	33054	36	-1432	-36	3prime_fragment	FALSE	canonical	3	126	junction_3	20.6074420214316	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAAGATCTTACAT	5393	False	NA	NA	False	NA	NA	NA	10961203	10954491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526
36717	chrX	-	1289	12	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	210	junction_11	355.941284971423	540	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72830226	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830133
36718	chr11	-	1732	1	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	26433	3	2774	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTTTGCTGCTTCGTTC	NA	False	NA	78	True	NA	NA	NA	97052274	97050542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97050500_97052300
36720	chr6	-	1479	6	NNC	ENSMUSG00000030057.16	novel	1661	5	NA	NA	13	-91	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4542.52878471893	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGACTAAAGTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	87828028	87820154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820735_87820791_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
36721	chr19	+	2479	11	FSM	ENSMUSG00000024927.9	ENSMUST00000025867.6	2716	11	237	0	1	0	multi-exon	FALSE	canonical	3	73	junction_5	8.59069263796581	213	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGAGTAGCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	5687747	5698158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5687870_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
36723	chr10	-	1583	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	16	884	16	-884	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	4	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGAGTCAAAATCCACCG	2	True	NA	NA	False	NA	NA	NA	128401840	128394520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
36724	chr10	+	1732	9	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	-19	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	375.039997866894	1837	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTATCCAGTGTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	72490707	72510790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797_72510470_72510534
36725	chr17	+	923	5	ISM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	126	1991	120	-1990	5prime_fragment	FALSE	canonical	3	256	junction_2	12.1732288239399	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTGTACGAACCTGCTCC	9370	False	NA	NA	False	NA	NA	NA	57071903	57074850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782
36727	chr19	-	1902	11	NNC	ENSMUSG00000010095.14	novel	2813	10	NA	NA	-32	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1202.64419093928	2	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	9168	False	NA	NA	False	NA	NA	NA	8700594	8684933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685254_8685337_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
36728	chr4	-	1283	8	NIC	ENSMUSG00000028692.15	novel	1420	9	NA	NA	8	-8	combination_of_known_splicesites	FALSE	canonical	3	54	junction_6	574.994374417911	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTGTATACGTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	116508869	116493715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116502700_116502791_116508535
36729	chr16	+	4631	8	NNC	ENSMUSG00000005615.16	novel	4789	9	NA	NA	-11200	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	38.9866539173788	1	153	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAATTTCCTGTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	32270557	32293884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288873_32289052_32290114
36730	chr16	+	1127	9	Antisense	novelGene_ENSMUSG00000022889.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCGTCCCGGTCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	84517157	84532130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_84517205_84520724_84520883_84522015_84522075_84524364_84524485_84527305_84527378_84527718_84527815_84529228_84529370_84531156_84531501_84532040
36731	chr18	+	1748	4	FSM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	0	7	0	2	multi-exon	FALSE	canonical	3	221	junction_1	451.424658411813	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACACGTTTGTTGTGGGAA	NA	False	NA	NA	False	NA	NA	NA	80250109	80255949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80250277_80250368_80250559_80253276_80253346_80254627
36732	chr17	-	3582	11	FSM	ENSMUSG00000024037.14	ENSMUST00000172284.9	3633	11	3	48	-2	-48	multi-exon	FALSE	canonical	3	14	junction_8	141.425033144772	524	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCTAAACCCCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	31731254	31713344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722641_31728794_31728887_31729551_31729621_31731140
36733	chr1	-	1728	6	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	1	817	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	804.309890527277	15	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTCTCGTGAGATCT	2339	False	NA	NA	False	NA	NA	NA	93729627	93719480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720557_93720619_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
36734	chr4	+	2723	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-2	2	combination_of_known_splicesites	FALSE	canonical	3	84	junction_13	71.5348220745028	7	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTGTATCCTTAAGT	-27	True	NA	NA	False	NA	NA	NA	11558919	11615807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11615442
36735	chr3	+	2805	9	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	-7	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	24.4335834457412	7	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAAGTTGGTGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	103716828	103729334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103727567_103727778_103727993_103728276_103728651
36736	chr10	-	3162	1	NIC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	17	-1002	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGATTAGAAGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	90959800	90956638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90956600_90959800
36739	chr2	-	2064	1	Intergenic	novelGene_2854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTCCTGCCTCCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	177466654	177464590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_177464600_177466700
36741	chr4	-	1411	1	ISM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	2516	0	2516	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127220438	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_127219000_127220400
36742	chr14	+	2850	6	NNC	ENSMUSG00000063277.8	novel	615	5	NA	NA	-14765	4528	intron_retention	FALSE	canonical	0	0	junction_1	1.6	5	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGTGTATGCTTCTG	6897	False	NA	NA	False	NA	NA	NA	14811035	14833406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_14811253_14815931_14816083_14825795_14826826_14827775_14827908_14828576_14828760_14832269
36743	chr2	+	3087	19	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	170	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATACAAATCAGCATTAGA	1365	False	NA	NA	False	NA	NA	NA	4995836	5015588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4996945_4997684_4997835_4998553_4998668_4999384_4999496_5000533_5000673_5001910_5002144_5003344_5003459_5003546_5003646_5004484_5004594_5005672_5005875_5006078_5006194_5008820_5008992_5009764_5009934_5011165_5011390_5011877_5012010_5012136_5012219_5013279_5013624_5015499
36744	chr1	+	2896	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-5	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	166.852556199191	1	127	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTTTATATTTTCATAG	9780	False	NA	NA	False	NA	NA	NA	175708373	175736245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708921_175710460_175710624_175714255_175714372_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735997
36745	chr5	+	3783	3	ISM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	780	0	432	0	3prime_fragment	FALSE	canonical	3	206	junction_2	10	164	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATGTTTCCTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	124940534	124965694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_124940573_124961771_124961837_124962014
36746	chr9	-	1798	7	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1696.49855093759	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTAGTGCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	110775162	110768671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769157_110769225_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
36747	chr2	+	2621	15	NIC	ENSMUSG00000001855.16	novel	6605	36	NA	NA	11	-13	combination_of_known_junctions	FALSE	canonical	3	5	junction_14	34.0507574311153	124	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAACAAATCTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31864458	31888696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884989_31886387_31886564_31887964_31888063_31888214
36748	chr2	+	1944	4	NNC	ENSMUSG00000074578.15	novel	659	4	NA	NA	1	-22	intron_retention	TRUE	non_canonical	0	0	junction_2	412.007551171362	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCTGACTAATGATATT	NA	False	NA	NA	False	NA	NA	NA	166905141	166907760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166905218_166905555_166906362_166906568_166907187_166907316
36749	chrX	-	2698	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	194	-153	7	-3	multi-exon	FALSE	canonical	3	37	junction_1	23.3939595569027	306	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATATGTGCTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	10082965	10024457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
36750	chr5	-	2169	10	FSM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	138	0	16	0	multi-exon	FALSE	canonical	3	595	junction_8	38.6382398699386	476	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	NA	False	NA	NA	NA	31377893	31360011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
36751	chr11	-	2753	7	NIC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	64.1320252811859	242	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	105834971	105824527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105834936
36753	chr9	+	3148	3	NIC	ENSMUSG00000056267.15	novel	2120	16	NA	NA	-13349	-4749	intron_retention	FALSE	canonical	3	188	junction_1	13	7	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAACGGCAATAAAGATAT	NA	False	NA	NA	False	NA	NA	NA	99160191	99173655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99163156_99171248_99171355_99173577
36754	chr15	+	1753	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	282	7	15	-5	3prime_fragment	FALSE	canonical	3	312	junction_2	30.5647522750088	49	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAACCCCTTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	102427175	102432104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
36755	chr11	-	2426	10	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-57	-2	intron_retention	FALSE	canonical	3	202	junction_7	25.4199299665867	3	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTGCAGCTTCTT	8970	False	NA	NA	False	NA	NA	NA	82798570	82791599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378
36756	chr12	+	1982	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	4	66	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.071061071468	327	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTCATATTTCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	72132566	72148301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_72132646_72132685_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
36757	chr15	+	2383	16	NNC	ENSMUSG00000022558.17	novel	4260	25	NA	NA	834	24196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	91	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTACCGATCTACTGCCGC	5662	False	NA	-41	True	NA	NA	NA	76337187	76361434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76337581_76337663_76337767_76337842_76337926_76338016_76338298_76338373_76338558_76338650_76338783_76338871_76338942_76339015_76339097_76339167_76339332_76339407_76339618_76339692_76339798_76339881_76340003_76340074_76340193_76350988_76351055_76358949_76359120_76361332
36758	chr15	-	1258	9	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	824	10	1	-6	3prime_fragment	FALSE	canonical	3	23824	junction_4	2715.03229435213	7	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	4342	False	NA	NA	False	NA	NA	NA	79966783	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590
36759	chr3	+	1716	11	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	21	-5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	481.635764868017	2	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAGCATCATGTTGAG	NA	False	NA	NA	False	NA	NA	NA	97066113	97083829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075131_97075176_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
36760	chr17	-	5959	41	NNC	ENSMUSG00000073434.13	novel	5962	41	NA	NA	8	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	18.7118779121712	53	28	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCGATACATTGTTTTATT	9816	False	NA	NA	False	NA	NA	NA	26080467	26063751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26064200_26064348_26064434_26064552_26064673_26064744_26064889_26064972_26065115_26065213_26065389_26065497_26065621_26066773_26066946_26067300_26067413_26067501_26067671_26067946_26068138_26068227_26068388_26068536_26068659_26068841_26068945_26069391_26069490_26069720_26069913_26070369_26070502_26070691_26070733_26070805_26070922_26071129_26071259_26071371_26071534_26071799_26071931_26072695_26072827_26073011_26073152_26073503_26073740_26074091_26074209_26074274_26074406_26074481_26074644_26074732_26074852_26075935_26075994_26076072_26076219_26076298_26076410_26077709_26077779_26078073_26078293_26078362_26078467_26078831_26078900_26078992_26079108_26079345_26079517_26079682_26079792_26079880_26080058_26080158
36761	chr5	+	3169	18	NNC	ENSMUSG00000014668.16	novel	3159	18	NA	NA	-20	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	112.121659085059	2	71	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTTCTTGTGTTGTAC	NA	False	NA	NA	False	NA	NA	NA	110283687	110319830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299555_110300208_110300324_110300955_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
36762	chr16	-	2198	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	113	9	61	-9	multi-exon	FALSE	canonical	3	963	junction_15	112.803285922348	1	82	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCGTGGCAGACGTTTT	0	True	NA	NA	False	NA	NA	NA	3895578	3857843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
36763	chr9	-	4689	39	NIC	ENSMUSG00000041528.16	novel	4727	39	NA	NA	17	2	combination_of_known_junctions	FALSE	canonical	3	15	junction_38	16.5285784572411	53	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCCTGGGCCCGCTCTT	NA	False	NA	NA	False	NA	NA	NA	107956483	107928873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107929160_107929233_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920_107955097_107955998
36764	chr5	-	1460	5	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5084	junction_4	3410.41855019292	62	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548743	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65546495_65546820_65546954_65547730_65548198_65548288_65548336_65548718
36765	chr7	-	1907	14	NNC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	222.108241643387	13	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGTGTGTGTACGAAG	NA	False	NA	NA	False	NA	NA	NA	28038171	28014324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018315_28030863_28030955_28037776_28037861_28038119
36766	chr6	-	1624	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-12	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	3110.20472340449	2	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATCCAAATTACTTGGT	NA	False	NA	NA	False	NA	NA	NA	51446886	51438111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438962_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442194_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
36767	chr11	-	2614	9	NNC	ENSMUSG00000020740.14	novel	966	8	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	144.324287630322	10	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTTGGCATCTTTCAAT	3548	False	NA	NA	False	NA	NA	NA	115494710	115475084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478511_115483308_115483357_115485531_115485608_115485734_115485820_115494653
36768	chr13	+	2457	25	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	15	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	177.397075010334	2	87	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTCATTGTGAATCCTTT	NA	False	NA	NA	False	NA	NA	NA	18901474	19050967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013391_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026320_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037607_19050592
36769	chr14	-	3194	13	ISM	ENSMUSG00000021910.16	ENSMUST00000022469.13	5559	21	101	12387	0	-4	5prime_fragment	FALSE	canonical	3	931	junction_2	79.5558853189938	9	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGCACATCTTTTTC	9422	False	NA	NA	False	NA	NA	NA	30928657	30905273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
36770	chr9	+	1363	12	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	930.567222382081	1	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1146	False	NA	NA	False	NA	NA	NA	108437635	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437646_108438981_108439057_108439372_108439580_108439990_108440079_108440331_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
36771	chr3	+	1694	10	FSM	ENSMUSG00000074182.9	ENSMUST00000098534.9	2339	10	20	625	5	57	multi-exon	FALSE	canonical	3	657	junction_9	57.8243402122986	307	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGAGCTCCTGGTTCAC	NA	False	NA	NA	False	NA	NA	NA	145282006	145309925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
36772	chr8	+	1947	18	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-13	0	intron_retention	FALSE	canonical	3	307	junction_10	32.4168353031672	600	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4571	False	NA	NA	False	NA	NA	NA	3681138	3692795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
36773	chr2	-	2141	11	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	38	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.609633024806	1	55	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAACTCCCCTTTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	165740898	165669110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
36775	chr12	+	1920	8	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	4	-935	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	190.122302205497	10	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATCTTTTTTAACTACC	NA	False	NA	NA	False	NA	NA	NA	59113732	59119849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59116970_59118525
36776	chr7	+	3586	10	FSM	ENSMUSG00000034690.14	ENSMUST00000037728.13	3615	10	29	0	29	0	multi-exon	FALSE	canonical	2	7	junction_4	4.84067131350933	36	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGATGACTTCTAATTTC	3006	False	NA	NA	False	NA	NA	NA	6048188	6108149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6048221_6063527_6063871_6068377_6069951_6075560_6075720_6076110_6076276_6087542_6087711_6095465_6095637_6101828_6102000_6103751_6103923_6107516
36778	chr8	+	2398	5	NNC	ENSMUSG00000031903.8	novel	2706	6	NA	NA	-3586	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	53.361971477823	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGATGTTGTAAGGTGCC	NA	False	NA	NA	False	NA	NA	NA	106881548	106891333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106881657_106886794_106886884_106887212_106887312_106887715_106887941_106889456
36779	chrX	-	1886	9	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	3	-5	intron_retention	FALSE	canonical	3	1767	junction_6	152.948469671978	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCACATGCTTGTGTGCGC	NA	False	NA	NA	False	NA	NA	NA	72974395	72965733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72973460_72973610_72973687_72973792_72973869_72974013
36780	chr11	+	1575	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	48	3	48	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	66	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATTTACAAGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	120653667	120655242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653700_120655200
36782	chr10	+	4433	7	NNC	ENSMUSG00000019817.19	novel	5260	6	NA	NA	0	-43	intron_retention	TRUE	non_canonical	0	0	junction_5	60.4522309118714	2	110	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCATATATACCTACATAT	2934	False	NA	NA	False	NA	NA	NA	12966455	13007395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_12966769_12981598_12981638_12992439_12992526_13000599_13000913_13002885_13003946_13004657_13006408_13006523
36783	chr8	+	3873	5	NIC	ENSMUSG00000046295.14	novel	2136	9	NA	NA	0	624	intron_retention	FALSE	canonical	3	99	junction_2	7.39509972887452	21	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTAAGTAGTGCATTAAT	NA	False	NA	NA	False	NA	NA	NA	71858653	71863172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514_71861469_71861565
36784	chr11	-	1886	10	NIC	ENSMUSG00000069631.15	novel	1517	11	NA	NA	3	4	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	39.0520387226462	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAATGGCACCAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	106084359	106054151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
36785	chr1	+	2055	7	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	21743	0	intron_retention	FALSE	non_canonical	0	0	junction_6	92.6152435257465	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCTTTGTTCACCCAT	NA	False	NA	NA	False	NA	NA	NA	165979778	165994078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165980032_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165993547_165993736
36786	chr16	-	1302	3	Antisense	novelGene_ENSMUSG00000095834.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	33	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGGATGGGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	3550149	3548165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_3548446_3548547_3549122_3549701
36787	chr4	+	2447	13	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	8	-2	combination_of_known_splicesites	FALSE	canonical	3	33	junction_11	86.901724506607	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTCTTGTGTGTATCCTT	-17	True	NA	NA	False	NA	NA	NA	11558929	11615803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11612371_11612439_11615442
36788	chr1	+	2600	2	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	15	-23	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	0	3	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATCTTGCTTTCCACAT	NA	False	NA	NA	False	NA	NA	NA	155911486	155929459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_155911667_155927039
36789	chr3	-	2139	8	NIC	ENSMUSG00000068921.15	novel	1375	12	NA	NA	0	1407	intron_retention	FALSE	canonical	3	827	junction_3	42.6772414616445	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAGAGGAACTCTCCCTT	NA	False	NA	NA	False	NA	NA	NA	88857258	88834373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
36790	chr10	-	3156	16	NNC	ENSMUSG00000006342.16	novel	3151	15	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	19.5770841092902	153	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTTCCCGTCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	75479874	75472539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477350_75477393_75477435_75477958_75478111_75478296_75478505_75479707
36791	chr18	-	1832	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	84	73	-1	-73	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	10	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCTTCATTGAAAAACCACA	NA	False	NA	NA	False	NA	NA	NA	36916174	36899653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
36792	chr3	+	3670	16	NIC	ENSMUSG00000027710.15	novel	2905	17	NA	NA	-12	72	intron_retention	FALSE	canonical	3	170	junction_2	14.024740045125	5	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTAAACTTCAAATTGT	NA	False	NA	NA	False	NA	NA	NA	36120203	36145593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143610_36144230_36144304_36144979
36793	chr11	-	3427	10	NNC	ENSMUSG00000018428.16	novel	3721	11	NA	NA	-1369	-139	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	376.769012644205	1	176	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	88736693	88721756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723973_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730571_88731985_88732129_88735084
36794	chr16	+	4142	1	Intergenic	novelGene_3581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATTACAATGTACAGAT	NA	False	NA	NA	False	NA	NA	NA	8665406	8669548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_8665400_8669500
36795	chr14	+	3577	16	Antisense	novelGene_ENSMUSG00000098433.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	15	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACATGGACAGCACTGCTG	NA	False	NA	NA	False	NA	NA	NA	118720186	118891660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_118721855_118727912_118728042_118737370_118737484_118738119_118738295_118836840_118836935_118841567_118841663_118848845_118848935_118849128_118849229_118852546_118852735_118853777_118853864_118856295_118856403_118864863_118865113_118867028_118867155_118868389_118868547_118869502_118869596_118891552
36796	chr17	+	1750	1	ISM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	8819	177	1753	-177	mono-exon	FALSE	NA	NA	NA	NA	NA	2	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCACTGGCTTAGTGC	NA	False	NA	NA	False	NA	NA	NA	29260420	29262170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29260400_29262200
36798	chrX	-	2736	20	NNC	ENSMUSG00000025059.17	novel	4245	20	NA	NA	87	-1362	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	36.2904564578196	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTGAGCTCCTATTGAA	NA	False	NA	NA	False	NA	NA	NA	84820143	84746904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773861_84774507_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
36799	chr9	+	3146	8	NNC	ENSMUSG00000032519.12	novel	961	8	NA	NA	1	1572	intron_retention	TRUE	non_canonical	0	0	junction_7	67.8187861517887	300	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTTATTTCTCCAATAA	1792	False	NA	NA	False	NA	NA	NA	119939471	119955142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949503_119949738_119949914_119951159_119951327_119952707_119953790_119954348
36801	chr6	-	2250	2	ISM	ENSMUSG00000029826.15	ENSMUST00000114900.8	4944	13	43014	3	43014	-3	3prime_fragment	FALSE	canonical	3	17	junction_1	0	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGGTCTGTTTATGGT	NA	False	NA	NA	False	NA	NA	NA	38288194	38282223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_38284392_38288112
36802	chr14	-	3000	14	FSM	ENSMUSG00000071350.13	ENSMUST00000161459.8	2995	14	-5	0	-5	0	multi-exon	FALSE	canonical	3	96	junction_12	10.965249034588	141	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTGTGATTATTAT	NA	False	NA	NA	False	NA	NA	NA	59678338	59639457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
36803	chr13	-	3476	5	Antisense	novelGene_ENSMUSG00000114013.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	111	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAAAGGCACCCGGAAGA	NA	False	NA	NA	False	NA	NA	NA	66123847	66044985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_66045091_66052246_66052380_66104168_66104258_66120560_66121467_66121604
36804	chr5	-	2921	6	NNC	ENSMUSG00000029213.12	novel	3360	6	NA	NA	-25	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	137.207288436147	974	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTGGGTGGGGATAGCT	NA	False	NA	NA	False	NA	NA	NA	72325557	72314064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_72314280_72315131_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
36805	chr10	-	3573	11	FSM	ENSMUSG00000035365.16	ENSMUST00000048518.16	3594	11	21	0	13	0	multi-exon	FALSE	canonical	3	41	junction_10	14.3666279968544	226	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	NA	False	NA	NA	NA	87982782	87927293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357
36806	chr16	-	3637	21	NNC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	58.0639948677319	2	143	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTCATAGTTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	10994206	10954466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964300_10965128_10965305_10966300_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
36807	chr17	-	2978	16	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-1042	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	338.259400789131	1	166	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCCCAATATTACTGTG	8756	False	NA	NA	False	NA	NA	NA	24470302	24442213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444037_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458825_24458899_24459752_24459858_24461071_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
36808	chr6	-	1948	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3745.31229429779	1	96	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1568	False	NA	NA	False	NA	NA	NA	7693253	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675517_7676008_7676149_7676234_7676317_7677230_7677332_7677939_7678052_7680088_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685401_7689274_7689524_7693108
36809	chr19	+	3103	6	NNC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	-10	-17	intron_retention	FALSE	non_canonical	0	0	junction_2	478.275067299143	17	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAGCCCAACGCGCGTA	953	False	NA	NA	False	NA	NA	NA	8713180	8717964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8713270_8713350_8713902_8714110_8715619_8716629_8717329_8717459_8717517_8717765
36810	chr11	-	909	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7899.66008586586	2544	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9938	False	NA	NA	False	NA	NA	NA	69812215	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807603_69808039_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
36811	chr7	+	3243	1	FSM	ENSMUSG00000040824.4	ENSMUST00000206766.2	1234	1	-38	-1971	-38	-479	mono-exon	FALSE	NA	NA	NA	NA	NA	24	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCCTGGATGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	18883745	18886988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18883700_18887000
36813	chr2	-	1158	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-14	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	467.543313501541	15	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTGATATGTGAAACATC	NA	False	NA	NA	False	NA	NA	NA	152185966	152179357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179679_152180387_152180608_152181634_152181904_152185089_152185248_152185776
36814	chr8	-	3824	13	Antisense	novelGene_ENSMUSG00000031785.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	196	55	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGGGAGGCCGGGATCAC	3803	False	NA	NA	False	NA	NA	NA	95740829	95703763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_95704044_95729064_95729140_95729876_95730302_95731841_95731973_95732377_95732527_95732825_95732958_95733447_95733566_95733895_95734296_95734997_95735116_95736131_95736406_95737130_95737239_95738172_95738440_95739482
36816	chr3	+	2112	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	201	-398	-14	398	multi-exon	FALSE	canonical	3	1297	junction_3	204.272758829953	1069	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGCCTTGTGCCATTTT	NA	False	NA	NA	False	NA	NA	NA	96079848	96085278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
36817	chr12	-	2317	8	ISM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	1676	-2	1676	1	3prime_fragment	FALSE	canonical	3	805	junction_5	28.1598933207627	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGGGTGTTGCAGTGT	1192	False	NA	NA	False	NA	NA	NA	103390363	103374239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130
36818	chr17	-	3373	6	FSM	ENSMUSG00000002617.15	ENSMUST00000037057.14	4103	6	64	666	22	341	multi-exon	FALSE	canonical	3	8	junction_3	2.41660919471891	23	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGGATTTCAGTGGCAA	NA	False	NA	NA	False	NA	NA	NA	23412162	23393508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23396339_23397248_23397376_23401121_23401207_23410318_23410410_23410650_23410777_23412048
36819	chr1	+	2526	5	NIC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	2179	-14	intron_retention	FALSE	canonical	3	409	junction_3	16.4525833837729	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCTGAGCAAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	171956518	171962836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171956888_171957468_171958341_171960696_171960874_171961566_171961612_171961773
36820	chr9	+	1630	9	ISM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	8	1	0	-1	intron_retention	FALSE	canonical	3	687	junction_5	67.9264307909668	89	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAAGCTCTTGTGTCTGT	2377	False	NA	NA	False	NA	NA	NA	21323140	21331569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920
36821	chr11	+	3758	5	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	93	-15	intron_retention	FALSE	canonical	1	1	junction_1	7.59522876548166	5	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACATGTCACTAACCC	NA	False	NA	NA	False	NA	NA	NA	22958557	22973709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22958627_22963538_22963648_22965654_22965885_22969999_22971134_22971493
36822	chr4	-	2292	13	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	31	-8	intron_retention	FALSE	non_canonical	0	0	junction_3	549.718128528916	2	101	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	8861	False	NA	NA	False	NA	NA	NA	129436453	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411201_129411627_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
36823	chr10	+	2681	4	NIC	ENSMUSG00000025410.11	novel	882	5	NA	NA	-1077	-152	intron_retention	FALSE	canonical	3	641	junction_3	32.6019767635168	1	142	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGTGGAGTCTCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	127111731	127117667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127113395_127113563_127114092_127114185_127114278_127117269
36824	chr1	-	3592	15	NNC	ENSMUSG00000026028.13	novel	6189	16	NA	NA	-3	1028	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	14.1797858421985	4	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTTGCTTTGAAAGTGT	1544	False	NA	NA	False	NA	NA	NA	59012592	58941634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58943342_58945864_58945971_58947681_58947842_58950961_58950996_58951344_58951422_58954844_58954983_58957930_58958006_58958379_58958511_58960232_58960312_58960838_58961049_58962680_58962798_58965809_58965887_58974904_58975100_58985405_58985695_59012395
36825	chr5	-	2973	21	Antisense	novelGene_ENSMUSG00000039178.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCCTGGCCGCTGACACT	NA	False	NA	NA	False	NA	NA	NA	54061078	53967034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_53967197_53986687_53986763_53987794_53988829_53990309_53990385_53992510_53992587_53993935_53994000_53995263_53995320_53995473_53995579_54003541_54003613_54005497_54005541_54007177_54007291_54014187_54014265_54017485_54017545_54029590_54029678_54032226_54032273_54041002_54041036_54044694_54044806_54046657_54046750_54054330_54054446_54058915_54058990_54060673
36826	chr6	+	2327	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	21	3	-12	1	multi-exon	FALSE	canonical	3	46	junction_2	7.5	222	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAATGGTTATTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	49296228	49318513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_49296415_49310844_49311232_49316759
36827	chr17	+	1838	1	NIC	ENSMUSG00000024014.9	novel	2698	6	NA	NA	867	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGTTTTCCATTCAT	NA	False	NA	NA	False	NA	NA	NA	29713247	29715085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29713200_29715100
36828	chr10	+	2006	5	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-1078	613	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.3777809579979	579	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTATTAGAAACTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	95728226	95733732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95728602_95729113_95729296_95729415_95729523_95729968_95730152_95732573
36829	chr6	-	2796	16	NIC	ENSMUSG00000058486.12	novel	2682	15	NA	NA	-5	-8	combination_of_known_junctions	FALSE	canonical	2	8	junction_14	24.5335144920848	17	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGTCACTTGGTGTCTCT	5805	False	NA	NA	False	NA	NA	NA	34887782	34857368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34886611_34886763_34887631
36831	chr9	-	1716	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	-2	0	-2	0	multi-exon	FALSE	canonical	3	370	junction_1	100.853500541273	494	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	NA	False	NA	NA	NA	66951191	66929871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
36832	chr8	-	1261	12	NIC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	-4	1	intron_retention	FALSE	canonical	3	3555	junction_3	315.250392414277	55	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAACTGACTGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	84321120	84298332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
36833	chr3	-	2493	21	NNC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	4955	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	201.063540951611	1	88	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	100064693	100045495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051693_100054049_100054087_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639
36834	chr3	+	2592	6	Antisense	novelGene_ENSMUSG00000000001.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	69	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCAAATCATTTAGGTAG	NA	False	NA	NA	False	NA	NA	NA	108014595	108023187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_108014938_108014985_108016633_108016718_108016927_108019248_108019405_108019788_108019923_108023082
36836	chr4	+	1895	11	FSM	ENSMUSG00000028252.21	ENSMUST00000133712.2	1247	11	17	-665	17	665	multi-exon	FALSE	canonical	1	3	junction_2	147.192425076836	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTGTGTAGTTTTGCA	24	True	NA	NA	False	NA	NA	NA	21727783	21749219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_21727916_21730396_21730504_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
36837	chr6	+	2282	1	FSM	ENSMUSG00000108125.2	ENSMUST00000204935.2	318	1	-582	-1382	-582	1382	mono-exon	FALSE	NA	NA	NA	NA	NA	26	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGAGAACACGAGA	NA	False	NA	NA	False	NA	NA	NA	120885051	120887333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_120885100_120887300
36838	chr1	+	2030	8	FSM	ENSMUSG00000026617.17	ENSMUST00000110965.2	1046	8	0	-984	0	-12	multi-exon	FALSE	canonical	3	19	junction_1	90.255872102482	23	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAAGCTGGGTAATTGC	NA	False	NA	NA	False	NA	NA	NA	185064376	185089962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
36839	chr16	+	1602	4	NNC	ENSMUSG00000022774.14	novel	2070	4	NA	NA	-6	-287	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	202.040150025242	11	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCGGAGTCTCGCTAGTT	NA	False	NA	NA	False	NA	NA	NA	31767412	31777003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_31767546_31772942_31773106_31775188_31775248_31775756
36840	chr6	-	1456	11	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3146.27897682326	10	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443164_51443542_51443686_51443885_51444033_51444164_51444276_51446650
36842	chr18	+	1698	2	Antisense	novelGene_ENSMUSG00000025420.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATGCAACGTTGAGGG	NA	False	NA	NA	False	NA	NA	NA	77130621	77132449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_77131800_77131929
36843	chr14	+	1812	7	NNC	ENSMUSG00000090440.3	novel	1757	5	NA	NA	-235842	-338	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	8.72576007513895	32	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	41059325	41302924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41059451_41147549_41147898_41292646_41292723_41296051_41296215_41297159_41297292_41297971_41298154_41302138
36844	chr15	+	1395	11	NNC	ENSMUSG00000097057.2	novel	4343	2	NA	NA	-2654	-388	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGATCTTTGTCTCTGCG	2946	False	NA	NA	False	NA	NA	NA	77843219	77850938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_77843323_77843711_77843986_77844144_77844297_77845813_77845944_77846045_77846134_77846640_77846771_77847377_77847526_77848219_77848353_77849102_77849212_77850334_77850412_77850887
36846	chr7	-	1725	10	FSM	ENSMUSG00000001794.14	ENSMUST00000129761.8	1157	10	-31	-537	-31	-3	multi-exon	FALSE	canonical	3	18	junction_9	497.427331996628	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATAGAGTAACTTGGTTA	NA	False	NA	NA	False	NA	NA	NA	29893237	29886370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892671
36847	chr12	+	1598	5	NIC	ENSMUSG00000021243.15	novel	749	8	NA	NA	2041	1	intron_retention	FALSE	canonical	3	1987	junction_4	145.814951222431	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAAATGCTATGTTGT	6754	False	NA	NA	False	NA	NA	NA	85019795	85030066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
36850	chr2	+	1839	11	NNC	ENSMUSG00000027207.16	novel	1928	10	NA	NA	51	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.5333986415382	6	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGTGTGTTGCTCTTGA	NA	False	NA	NA	False	NA	NA	NA	125708238	125825504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_125708306_125710767_125710894_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
36851	chr7	-	3277	4	NIC	ENSMUSG00000050855.17	novel	3712	4	NA	NA	-5	-2	intron_retention	FALSE	canonical	2	6	junction_3	21.2289111041209	72	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGTGTGACTTTGTGG	3418	False	NA	NA	False	NA	NA	NA	29553099	29543362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29545674_29545893_29546386_29550366_29550443_29552701
36852	chr19	-	1426	10	Antisense	novelGene_ENSMUSG00000071644.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	53	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGGGGTGGGGCCCGCA	NA	False	NA	NA	False	NA	NA	NA	8955414	8944403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8944585_8945581_8945734_8946523_8946589_8946726_8946866_8947202_8947349_8949867_8950000_8950266_8950478_8954684_8954852_8954947_8955073_8955306
36853	chrM	+	1900	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	504	-580	504	580	mono-exon	FALSE	NA	NA	NA	NA	NA	3	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	174	False	NA	-63	True	NA	NA	NA	12245	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12200_14100
36854	chr7	+	1533	3	NNC	ENSMUSG00000038503.16	novel	4492	3	NA	NA	-75	1096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	662.5	5	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	NA	False	NA	NA	NA	83541462	83548384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544737_83544760_83547094
36855	chr7	-	1934	4	NIC	ENSMUSG00000090862.4	novel	1317	5	NA	NA	13	0	intron_retention	FALSE	canonical	3	8384	junction_1	1224.48419979825	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	115933388	115930744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_115931715_115932163_115933010_115933134_115933184_115933319
36856	chr15	-	2081	13	FSM	ENSMUSG00000037458.16	ENSMUST00000110329.8	4217	13	0	2136	0	1100	multi-exon	FALSE	canonical	0	0	junction_10	173.208669112015	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAAGCTTAAACAGGCA	NA	False	NA	NA	False	NA	NA	NA	38519507	38490617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
36857	chr15	+	1297	10	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	0	-423	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	4224.96752854788	6	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTAATAGTCTGATCA	NA	False	NA	NA	False	NA	NA	NA	103148880	103152959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152699
36858	chr11	-	1645	9	NNC	ENSMUSG00000020457.14	novel	1546	9	NA	NA	321	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	643.840818836457	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCATGTGTCGTTATTCAT	NA	False	NA	NA	False	NA	NA	NA	3216071	3199921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3215832
36859	chr6	-	2274	5	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	977.86885623789	1	79	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847910	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148824351_148830023_148830134_148832048_148832149_148834499_148834647_148847789
36861	chr12	-	2839	19	NIC	ENSMUSG00000021038.18	novel	2524	20	NA	NA	-21	-1	intron_retention	FALSE	canonical	3	87	junction_1	7.62650511354405	371	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTCTTCCCCATCTGGTT	NA	False	NA	NA	False	NA	NA	NA	87313051	87285647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
36862	chr7	+	1023	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	38	-9	multi-exon	FALSE	canonical	0	0	junction_1	0	4	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCTGCACCCACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396432	51397617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_51396568_51396729
36863	chr8	+	2390	14	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	-28	-409	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_6	140.533135346001	7	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCCAATGCTCACCTGT	2129	False	NA	NA	False	NA	NA	NA	70495434	70524588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513095_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
36864	chr10	+	2076	14	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	-9	-3	intron_retention	FALSE	canonical	0	0	junction_10	580.414726241392	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGGATGCTGTCTCGGT	NA	False	NA	NA	False	NA	NA	NA	111309132	111332742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329318_111330031_111330155_111330655_111330686_111331185_111331237_111331900
36865	chr9	+	1477	7	ISM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	19802	9	19545	-5	3prime_fragment	FALSE	canonical	3	728	junction_1	122.825983497883	114	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGACTCTGAGTGGC	1864	False	NA	NA	False	NA	NA	NA	45301284	45307448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
36866	chrX	+	977	10	ISM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	167	11456	72	1420	5prime_fragment	FALSE	canonical	3	1167	junction_1	597.038989979344	1	19	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGATGACTGACTTTGCC	NA	False	NA	NA	False	NA	NA	NA	20524731	20537962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928
36868	chr8	+	1947	3	ISM	ENSMUSG00000031917.13	ENSMUST00000170962.3	606	4	-17	-359	7	359	intron_retention	FALSE	canonical	3	802	junction_2	27.5	9	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATTTGTTATTTCAT	NA	False	NA	NA	False	NA	NA	NA	107783515	107785657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107783623_107783724_107783812_107783904
36869	chr9	+	3675	16	FSM	ENSMUSG00000032512.8	ENSMUST00000217472.2	2997	16	-5	-673	-5	-48	multi-exon	FALSE	canonical	3	238	junction_12	21.7864381872964	11	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAACAAAATTCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	119723955	119751697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622
36870	chr2	+	1795	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	67	-708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1763.71949930317	2	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTGTCGTTTTTTTCCCC	NA	False	NA	NA	False	NA	NA	NA	121244430	121268460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264096_121264465_121264575_121265269_121265399_121266406_121266482_121266837_121266900_121268072
36871	chr14	+	1656	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-24	1293	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2344.2559955857	8	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTGCAGTTTCAAGGCT	NA	False	NA	NA	False	NA	NA	NA	63359938	63380605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379972
36872	chrX	-	2058	10	NNC	ENSMUSG00000031134.17	novel	2108	9	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.906330431405	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAACCCTGAAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	56438397	56431724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_56432468_56432512_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
36873	chr16	+	5483	3	Antisense	novelGene_ENSMUSG00000039789.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACTCACCAGCCCCGGA	NA	False	NA	NA	False	NA	NA	NA	3679422	3690108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_3684592_3689012_3689141_3689922
36874	chr5	-	2295	11	NNC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	15	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	243.361870472759	1	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92583063	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92564190_92565315_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92572102_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
36875	chr4	-	1212	5	ISM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	6755	0	-921	0	3prime_fragment	FALSE	canonical	3	666	junction_4	58.243025333511	49	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	132998348	132993355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273
36876	chr2	+	2678	1	NIC	ENSMUSG00000026810.13	novel	869	4	NA	NA	24	5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	23	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTTTGTCTCTCTGCCA	4806	False	NA	NA	False	NA	NA	NA	32460902	32463580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32460900_32463600
36877	chr19	-	1478	7	FSM	ENSMUSG00000024997.8	ENSMUST00000025961.7	1478	7	-19	19	-19	-19	multi-exon	FALSE	canonical	3	658	junction_4	52.5148127251308	3505	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGCGTTTTTGACTTAT	1428	False	NA	NA	False	NA	NA	NA	60863013	60852507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
36878	chr4	+	3470	27	FSM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	77	2194	10	6	multi-exon	FALSE	canonical	3	237	junction_13	294.548307788895	5	102	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAAGGACGTGTTTCAGA	580	False	NA	NA	False	NA	NA	NA	137321527	137383648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
36879	chr17	+	1891	2	ISM	ENSMUSG00000024180.15	ENSMUST00000236993.2	3356	6	251	3199	-85	-2292	internal_fragment	FALSE	canonical	3	294	junction_1	0	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGCTATGGATACACG	NA	False	NA	NA	False	NA	NA	NA	26337053	26339024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26337927_26338006
36880	chr14	+	3030	12	NIC	ENSMUSG00000034327.18	novel	2528	11	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	8	junction_4	38.6107936778015	95	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCTGTTTCTGCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	67953597	67979609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_67953631_67962006_67962129_67963775_67963820_67966098_67966196_67966672_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
36881	chr17	-	3470	21	NNC	ENSMUSG00000024170.16	novel	3530	21	NA	NA	36	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_15	22.1909891622703	1	99	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACAGGCTGCTTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	25334843	25318549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326414_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334386
36882	chr9	+	1235	12	ISM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	21	1071	21	-1063	5prime_fragment	FALSE	canonical	3	1203	junction_11	71.5059958186482	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGGTGGGTGCTCGGT	NA	False	NA	NA	False	NA	NA	NA	106354488	106361552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409
36883	chr8	-	3858	23	NIC	ENSMUSG00000017765.18	novel	3755	24	NA	NA	11	-27	intron_retention	FALSE	canonical	3	126	junction_14	19.6526132260209	3	40	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAATAAAACATTGTGTA	NA	False	NA	NA	False	NA	NA	NA	106692695	106670251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106670806_106670906_106671041_106671153_106671339_106671766_106671875_106671971_106672104_106672192_106672673_106673322_106673492_106673688_106673794_106674124_106674245_106674484_106674584_106675769_106675889_106676285_106676461_106676828_106676887_106677136_106677236_106677327_106677493_106678053_106678269_106678411_106678654_106680439_106680571_106682058_106682114_106682212_106682360_106685989_106686122_106687307_106687403_106692556
36884	chr17	+	1886	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	0	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1039.68335135001	2	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTTTGGTCCTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	13135328	13143461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142111_13142298_13142416_13142581_13143146
36885	chr9	+	4309	11	FSM	ENSMUSG00000038708.11	ENSMUST00000211840.2	4461	11	147	5	147	-5	multi-exon	FALSE	canonical	3	74	junction_10	60.3685348505329	98	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATAATAGTGTTCATTG	NA	False	NA	NA	False	NA	NA	NA	118385994	118411582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118408609_118408675_118410916
36886	chr7	-	1449	13	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	-1	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	2215.63025112996	9	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGATGTAGTTGTACATG	NA	False	NA	NA	False	NA	NA	NA	110682227	110671144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671241_110676235_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677748_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
36887	chr12	+	2673	13	Antisense	novelGene_ENSMUSG00000056770.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	170	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGCGGTGGCGGCGGCGG	NA	False	NA	NA	False	NA	NA	NA	108072696	108145496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_108073937_108074814_108074977_108077480_108077567_108078388_108078556_108079577_108079657_108084503_108084618_108085366_108085424_108124012_108124269_108124533_108124607_108126490_108126639_108129229_108129327_108131322_108131432_108145411
36888	chr14	+	2734	4	NNC	ENSMUSG00000022125.8	novel	2445	4	NA	NA	102	-20	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_2	119.973145143218	7	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAACTCAAGAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	103307753	103315044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_103307904_103309069_103309236_103310211_103310849_103313263
36889	chr12	+	1790	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	-17	0	-17	0	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	4022	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTCATGTTTATGCTA	NA	False	NA	NA	False	NA	NA	NA	8971646	8988742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
36890	chr5	+	2092	16	NNC	ENSMUSG00000059447.14	novel	425	5	NA	NA	107	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	146.097988426337	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGACTGTTCGTAGTC	NA	False	NA	NA	False	NA	NA	NA	30360407	30389578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30360572_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
36891	chr4	+	2145	20	FSM	ENSMUSG00000028576.13	ENSMUST00000030311.11	2139	20	-2	-4	-2	4	multi-exon	FALSE	canonical	3	154	junction_8	18.5526129152575	478	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTTCCTGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	94502725	94581470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
36892	chr5	+	3358	11	FSM	ENSMUSG00000079109.12	ENSMUST00000126331.2	2826	11	-43	-489	-8	489	multi-exon	FALSE	canonical	3	72	junction_4	12.2723265927859	17	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTAAAGATTTATG	NA	False	NA	NA	False	NA	NA	NA	143846799	143864177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038
36893	chr11	+	813	2	Genic_Genomic	ENSMUSG00000080776.2	novel	813	1	NA	NA	-26	60	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTGAAAAAAAAAAGAATATT	NA	False	NA	NA	False	NA	NA	NA	46618618	46619517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_46618829_46618914
36894	chr11	-	3104	17	NIC	ENSMUSG00000020918.15	novel	3043	18	NA	NA	-2	-28	intron_retention	FALSE	canonical	3	387	junction_11	56.9428167111533	117	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACAATAAAGCTTTTTTT	6777	False	NA	NA	False	NA	NA	NA	100603293	100595599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
36895	chr9	+	2531	5	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	32	-1526	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1356.08561215729	3701	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCACTCAGCGTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	20563422	20576354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20563494_20566657_20566877_20573073_20573320_20573593_20573705_20574470
36896	chr11	+	2369	16	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	3	-4	intron_retention	FALSE	canonical	1	2	junction_5	334.475682557375	7	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTCAAAGCTGAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	120564202	120600264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120578371_120578446_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
36898	chrX	-	3858	10	NNC	ENSMUSG00000036551.7	novel	1792	6	NA	NA	18112	23907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	52	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAACAGGAAGGGATTTGT	NA	False	NA	NA	False	NA	NA	NA	36414383	36390443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36391029_36394630_36394712_36400164_36400234_36400402_36400545_36403328_36403393_36405289_36405401_36405489_36405566_36406557_36406705_36411440_36413904_36414263
36899	chr12	+	1588	11	NNC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	0	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	734.210112978567	5986	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTGTAATGAGTACCATG	3973	False	NA	NA	False	NA	NA	NA	100076412	100089624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100076471_100078589_100078644_100079277_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
36901	chr8	+	2692	11	NIC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	-8	-4	intron_retention	FALSE	canonical	3	221	junction_1	43.3192797724062	13	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATTATCAGTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	117648460	117668238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117664014_117667182_117667310_117667573
36902	chr13	-	3119	4	ISM	ENSMUSG00000021377.16	ENSMUST00000138401.2	1946	5	8230	136	8129	-129	3prime_fragment	FALSE	canonical	3	1428	junction_1	83.4279462903302	2	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATTTTCACATACTTGA	NA	False	NA	NA	False	NA	NA	NA	47243684	47238386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952
36903	chr16	+	1706	13	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-3	-163	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	852.990751545538	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCAATCACTTGGGTGAG	NA	False	NA	NA	False	NA	NA	NA	20470450	20478303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475614_20475725_20476231_20476360_20476723_20476812_20478155
36904	chr3	-	1880	13	ISM	ENSMUSG00000015748.14	ENSMUST00000161476.8	2732	16	6789	-4	610	0	3prime_fragment	FALSE	canonical	3	400	junction_5	23.1960245636091	3	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTATGATATTTTTCATA	5607	False	NA	NA	False	NA	NA	NA	95756276	95737929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226
36905	chr16	-	2659	6	NIC	ENSMUSG00000022956.12	novel	838	7	NA	NA	-44	2	intron_retention	FALSE	canonical	3	5653	junction_5	366.596453883558	27	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGTGAGGAGCCTTGTCC	903	False	NA	NA	False	NA	NA	NA	91728483	91722104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91725898_91727241_91727293_91728407
36906	chr6	-	2023	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	828	-109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	3044.74898475478	1	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAAAATGCTGATTGTAA	NA	False	NA	NA	False	NA	NA	NA	51445924	51438233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444305_51445287
36907	chr9	-	4320	18	Antisense	novelGene_ENSMUSG00000103624.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	190	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCATTTTCCACACGCCA	NA	False	NA	NA	False	NA	NA	NA	100840593	100525687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_100525848_100587203_100587308_100594490_100594594_100620030_100620194_100639740_100639838_100658806_100658884_100668542_100668743_100678737_100678926_100813629_100813778_100824688_100824790_100826818_100826971_100827908_100828038_100829133_100829339_100833657_100833835_100835538_100835650_100836270_100836388_100838420_100838503_100838587
36909	chr18	+	1639	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	22	-11	-6	2	multi-exon	FALSE	canonical	3	109	junction_1	503.796475661441	1176	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACACGTTTGTTGTGGGAA	NA	False	NA	NA	False	NA	NA	NA	80250103	80255949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
36910	chr15	+	3752	10	NNC	ENSMUSG00000000532.12	novel	4418	9	NA	NA	63	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5.78204970278119	113	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAACTGCTCTGATCCCG	NA	False	NA	NA	False	NA	NA	NA	101072010	101111557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101072117_101091812_101092053_101092689_101092939_101096664_101096896_101099858_101100027_101100818_101100976_101102333_101102459_101106960_101107092_101108617_101109832_101110426
36911	chr8	+	1204	2	ISM	ENSMUSG00000036054.16	ENSMUST00000131489.8	4609	11	26119	4	-97	-4	3prime_fragment	FALSE	canonical	3	132	junction_1	0	32	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCTGCCCGGCTCCTGTGC	8939	False	NA	NA	False	NA	NA	NA	70712994	70715751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70713968_70715520
36912	chr2	+	1778	7	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	23544	-1564	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.0299232718155	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAGTGTTGGAATTCTTT	NA	False	NA	NA	False	NA	NA	NA	152092376	152122208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152092384_152102678_152102687_152114547_152114650_152116012_152116114_152117313_152117467_152118866_152118954_152120888
36913	chr15	-	1913	3	FSM	ENSMUSG00000005354.17	ENSMUST00000109748.9	2049	3	294	-158	294	-5	multi-exon	FALSE	canonical	3	1083	junction_2	38	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCACTGGCTGCTGTTCTG	3047	False	NA	NA	False	NA	NA	NA	77812874	77799251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77800058_77808742_77808867_77811891
36914	chr14	+	1748	9	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1269	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3245.23137657394	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGGCAGGGTGCACG	NA	False	NA	NA	False	NA	NA	NA	63359964	63380581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371519_63373913_63373979_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
36915	chr13	-	2540	7	NNC	ENSMUSG00000060739.9	novel	2700	6	NA	NA	-28	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	340.561790771269	4048	50	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTTTTAAAGGAGCTTT	NA	False	NA	NA	False	NA	NA	NA	97274409	97265972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97266673_97266755_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
36916	chr13	+	2695	10	Antisense	novelGene_ENSMUSG00000116016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	107	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAGATGATGATCTTCAT	NA	False	NA	NA	False	NA	NA	NA	111562698	111624867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111563186_111570081_111570188_111572938_111573118_111574489_111574659_111575641_111575779_111577165_111577369_111589522_111589774_111589898_111590031_111603384_111603504_111623955
36917	chr16	+	2613	9	NIC	ENSMUSG00000002845.15	novel	2667	9	NA	NA	5	1	combination_of_known_junctions	FALSE	canonical	1	7	junction_7	302.963591046845	1	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATCTATTTTTTCTTGCGA	NA	False	NA	NA	False	NA	NA	NA	38383227	38411553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38407742_38408544_38408666_38411273
36918	chr7	-	3614	5	FSM	ENSMUSG00000048012.20	ENSMUST00000120074.8	3624	5	-78	88	-78	-88	multi-exon	FALSE	canonical	1	2	junction_4	25.0499500997507	3	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATACCTGGCACACAGGAA	NA	False	NA	NA	False	NA	NA	NA	44397551	44381026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397359
36919	chr11	-	1649	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	79	528	12	-528	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	1121	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTAGCCCAGGAAAAAGC	6435	False	NA	NA	False	NA	NA	NA	102076043	102053850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
36920	chr15	+	1737	10	NNC	ENSMUSG00000023010.16	novel	944	10	NA	NA	102	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	782.831817391825	7	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTGTCTCAGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	99291201	99307928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99291388_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99307095
36921	chr17	+	4418	6	NIC	ENSMUSG00000054469.15	novel	4467	6	NA	NA	28	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	15.992498241363	137	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGATTCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	73415016	73550363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_73415152_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
36923	chr13	-	682	6	NNC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	39	5546	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	165.125406888219	3	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGTATATATAGTGAGTT	NA	False	NA	NA	False	NA	NA	NA	100912368	100903154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100903390_100907702_100907778_100907981_100908075_100908162_100908212_100909233_100909290_100912194
36925	chr8	-	1085	3	ISM	ENSMUSG00000032815.17	ENSMUST00000211934.2	701	4	46	-219	46	0	intron_retention	FALSE	canonical	3	169	junction_2	13.5	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTGGCCTTATTGT	NA	False	NA	NA	False	NA	NA	NA	123996423	123995038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_123995289_123995483_123995577_123995681
36926	chr2	+	1084	1	FSM	ENSMUSG00000084013.2	ENSMUST00000118388.2	846	1	-72	-166	-72	166	mono-exon	FALSE	NA	NA	NA	NA	NA	26	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	170126882	170127966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_170126900_170128000
36928	chr2	+	2910	21	Antisense	novelGene_ENSMUSG00000034032.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGACTGGCACTTCCGCCGC	196	False	NA	NA	False	NA	NA	NA	119600157	119617994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_119600214_119600367_119600453_119600850_119600911_119601370_119601573_119601676_119601840_119602227_119602371_119602963_119603142_119603621_119603753_119603869_119604053_119604270_119604439_119604597_119604701_119605433_119605533_119605776_119605893_119607146_119607381_119608601_119608817_119610533_119610659_119613129_119613219_119613563_119613718_119614221_119614451_119617700_119617779_119617895
36929	chr8	+	1782	7	NIC	ENSMUSG00000031770.17	novel	1952	8	NA	NA	-28	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	176.685848015309	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGACTCCCATTGTCCT	NA	False	NA	NA	False	NA	NA	NA	95113094	95121987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_95113367_95115983_95116062_95116148_95116224_95117345_95117477_95118801_95119153_95120423_95120530_95121218
36931	chr16	-	2984	3	NNC	ENSMUSG00000059305.13	novel	406	3	NA	NA	-10851	-1850	intron_retention	TRUE	non_canonical	0	0	junction_1	0	8	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCGGCTCTGTCCGTCT	NA	False	NA	NA	False	NA	NA	NA	16699558	16688632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16688693_16695694_16695873_16696812
36932	chr11	+	2577	2	NNC	ENSMUSG00000018599.6	novel	716	3	NA	NA	1836	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATGTGTAATTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	60621106	60623776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60623534_60623626
36933	chr1	-	684	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	-19	226	-19	-226	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTTACTTCAAGAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	86837424	86836740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836700_86837400
36934	chr12	-	3537	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	30.7224310332864	152	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTATAGTTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	83968665	83840809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_83842929_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83902213_83902299_83923441_83923587_83968591
36935	chr11	-	2381	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	199	8	0	1	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	703	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTCATCCTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	5049067	5019696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
36936	chrX	-	3361	5	NNC	ENSMUSG00000054737.12	novel	3160	5	NA	NA	-3	161	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	19.3261480900877	113	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACCTCAAATGAATCTG	3242	False	NA	NA	False	NA	NA	NA	20928285	20895016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_20897892_20902575_20902753_20902866_20903012_20926741_20926797_20928176
36937	chrX	-	5917	5	FSM	ENSMUSG00000054737.12	ENSMUST00000115334.8	3160	5	-3	-2754	-3	2750	multi-exon	FALSE	canonical	3	41	junction_2	3.67423461417477	123	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGGTATCTCAAGATCAT	3233	False	NA	NA	False	NA	NA	NA	20928294	20892427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_20897892_20902575_20902711_20902866_20903012_20926741_20926797_20928176
36938	chr7	+	3741	14	FSM	ENSMUSG00000018995.13	ENSMUST00000044466.12	3778	14	37	0	-20	0	multi-exon	FALSE	canonical	3	94	junction_6	11.3976017408833	110	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATACTGTTTGCGCTTCTT	7379	False	NA	NA	False	NA	NA	NA	96600748	96713965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
36941	chr9	-	3332	15	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	172	-181	intron_retention	FALSE	non_canonical	0	0	junction_8	80.4089356898567	1	135	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAGGACTGAAAAAGACTT	6586	False	NA	NA	False	NA	NA	NA	44272759	44259405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265841_44266253_44266448_44266995_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271276_44272740
36942	chr11	+	3094	21	FSM	ENSMUSG00000020694.18	ENSMUST00000015107.13	3212	21	119	-1	37	0	multi-exon	FALSE	canonical	3	73	junction_5	74.0480249567806	161	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCCTGGATTCTCTGAT	NA	False	NA	NA	False	NA	NA	NA	105072861	105173003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_105072878_105075037_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170052_105171910
36943	chr12	+	2328	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	-77	2	17	0	multi-exon	FALSE	canonical	3	17	junction_1	17.7822945651004	134	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	NA	False	NA	NA	NA	88327340	88428488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
36945	chr17	-	3318	4	NNC	ENSMUSG00000002668.9	novel	460	3	NA	NA	-178	3635	intron_retention	FALSE	non_canonical	0	0	junction_1	0	347	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCGCCCGCTCACGTGAC	NA	False	NA	NA	False	NA	NA	NA	57375070	57369269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57369371_57369591_57369765_57370634_57370696_57372087
36946	chr3	+	2537	23	NNC	ENSMUSG00000027820.13	novel	3782	23	NA	NA	122	-588	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	106.889656938034	1	81	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGGAGCCTACGATCT	NA	False	NA	NA	False	NA	NA	NA	63203637	63287929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235275_63235388_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
36948	chr10	+	1688	4	NNC	ENSMUSG00000020265.17	novel	1874	4	NA	NA	22	-8	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	609.405356793726	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTGTCTCTTGGCCTA	NA	False	NA	NA	False	NA	NA	NA	77442426	77453248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77442647_77445645_77445775_77449813_77449886_77451981
36950	chr13	+	1971	7	Fusion	ENSMUSG00000113626.2_ENSMUSG00000074867.5_ENSMUSG00000113836.2	novel	419	3	NA	NA	-2504	519	multi-exon	TRUE	non_canonical	0	0	junction_2	28.6962057112473	3	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62006125	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_62006156_62007517_62008159_62198625_62198679_62319820_62320193_62320444_62320952_62321035_62321175_62321523
36951	chr18	+	1665	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	18	0	-14	0	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	1460	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGTTTGTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	80250030	80255947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
36952	chr9	+	1796	7	NNC	ENSMUSG00000032249.15	novel	2113	7	NA	NA	17	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	202.512551051369	44	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGGAGATGGCTTCC	NA	False	NA	NA	False	NA	NA	NA	62248627	62286084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284629_62285108
36954	chr5	-	1856	4	NNC	ENSMUSG00000029627.13	novel	1967	3	NA	NA	21	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.9938250421547	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACATGACTTTTGTTGTGA	1623	False	NA	NA	False	NA	NA	NA	145138646	145131777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_145132593_145132649_145133010_145135486_145135611_145138089
36955	chr15	+	2893	13	FSM	ENSMUSG00000051934.6	ENSMUST00000063517.6	3096	13	196	7	-42	-7	multi-exon	FALSE	canonical	3	296	junction_2	25.9147909289056	191	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGACTCCTTAGCGCCG	NA	False	NA	NA	False	NA	NA	NA	99024632	99111089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99024769_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
36956	chr12	+	1398	6	ISM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	1056	6	265	0	intron_retention	FALSE	canonical	3	1780	junction_4	86.8792265158939	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80993414	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267
36958	chr4	+	3395	9	FSM	ENSMUSG00000042202.16	ENSMUST00000118607.2	2166	9	35	-1264	35	493	multi-exon	FALSE	canonical	2	8	junction_6	4.43705983732471	26	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAGTACTTTCATAGAATA	NA	False	NA	NA	False	NA	NA	NA	155686435	155705040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155686620_155694295_155694777_155694957_155695094_155696072_155696201_155697073_155697195_155700025_155700080_155700639_155700713_155702071_155702218_155702968
36959	chr4	+	768	1	ISM	ENSMUSG00000042202.16	ENSMUST00000105608.9	6291	9	21149	8	12362	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	22	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTAATCCTGCAGTAGC	1658	False	NA	NA	False	NA	NA	NA	155707021	155707789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_155707000_155707800
36960	chr8	-	2292	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	-6	-1	-3	0	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	675	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	NA	False	NA	NA	NA	11685760	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
36961	chrX	+	2144	19	NIC	ENSMUSG00000031360.15	novel	592	3	NA	NA	428	18	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	51.3054577993414	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTTGTGTTTTCTCCA	NA	False	NA	NA	False	NA	NA	NA	161685594	161814333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_161685673_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
36962	chr9	+	1932	8	NNC	ENSMUSG00000032249.15	novel	2113	7	NA	NA	17	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	189.466490494779	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTTGGGAGATGGCTT	NA	False	NA	NA	False	NA	NA	NA	62248627	62286082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835_62284944_62285095
36963	chr2	-	3146	10	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	4902	-55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	450.432987849702	1	139	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTTTGTTTTGTGTCT	7541	False	NA	NA	False	NA	NA	NA	94257431	94242081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251865_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277
36965	chr6	+	2752	3	FSM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	37	3	37	-3	multi-exon	FALSE	canonical	3	134	junction_1	12	166	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTACTGTGTTGTGTTA	195	False	NA	NA	False	NA	NA	NA	113600956	113608591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113601340_113605052_113605176_113606345
36967	chr4	-	3029	8	ISM	ENSMUSG00000012117.14	ENSMUST00000012262.12	3133	9	494	-5	0	5	3prime_fragment	FALSE	canonical	3	65	junction_4	5.473498303048	17	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTTTGTGTGGTAACTG	NA	False	NA	NA	False	NA	NA	NA	133727704	133696362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579
36968	chr7	+	3166	14	NIC	ENSMUSG00000008373.17	novel	1798	13	NA	NA	3	-31	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	241.003081322834	1683	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACCAAAATAAAGCCAAAAC	3010	False	NA	NA	False	NA	NA	NA	3633060	3645453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3633187_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
36969	chr16	+	1537	7	Genic_Genomic	ENSMUSG00000086083.2	novel	869	2	NA	NA	-9643	-309	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGCCGAGGGGCTTGGGG	NA	False	NA	NA	False	NA	NA	NA	33776965	33787373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_33777094_33777191_33777305_33779421_33779536_33780544_33780721_33781936_33782607_33784137_33784298_33787197
36970	chr4	-	1950	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	85	3	63	-3	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	1	80	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGCCCTGGTTGGTTTAA	8893	False	NA	NA	False	NA	NA	NA	129436421	129409899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
36972	chr1	+	1843	8	NIC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	2	0	intron_retention	FALSE	canonical	3	337	junction_4	39.0227563122351	145	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	8220	False	NA	NA	False	NA	NA	NA	134333767	134339474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
36973	chr9	+	1801	8	ISM	ENSMUSG00000004100.13	ENSMUST00000147780.2	1834	9	121	1	121	-1	3prime_fragment	FALSE	canonical	3	766	junction_6	75.7754469953621	16	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799701	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802662_20802746_20803044_20803127
36975	chr13	-	2846	17	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	48.3211505838799	3	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGTGAGTCCTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	63579508	63459951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509571_63535056_63535139_63545837_63545992_63548047_63548133_63550655_63550853_63553910_63554070_63579263
36976	chr7	+	1223	5	NNC	ENSMUSG00000030682.5	novel	805	5	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	184.117319934872	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTCAGAGCATG	NA	False	NA	NA	False	NA	NA	NA	126577451	126579671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126577588_126578086_126578169_126578493_126578576_126578706_126578949_126578990
36977	chr6	-	1321	8	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	3349.67744411187	286	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGTGTAATTATAGACT	NA	False	NA	NA	False	NA	NA	NA	51446825	51439742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440443_51443287_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
36978	chr10	+	2062	8	FSM	ENSMUSG00000019923.15	ENSMUST00000105431.8	2676	8	-10	624	-10	0	multi-exon	FALSE	canonical	3	29	junction_7	390.63955932051	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	72490716	72504997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72503730
36979	chr16	-	3339	22	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	74	0	intron_retention	FALSE	canonical	3	159	junction_8	39.5153175042327	62	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACACCTAATTAGCCAC	NA	False	NA	NA	False	NA	NA	NA	20534787	20521747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
36980	chr9	+	2026	13	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	167.884612325119	30	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	NA	False	NA	NA	NA	114230171	114303445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114293981_114294117_114302905
36981	chr2	-	2412	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	-28	0	-28	0	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	139	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	NA	False	NA	NA	NA	152174360	152158253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
36982	chr9	+	1732	9	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	2	-9	intron_retention	FALSE	canonical	3	785	junction_2	63.5491935432701	38	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTTTTTGAGTC	NA	False	NA	NA	False	NA	NA	NA	20799564	20803465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20803044_20803127
36983	chr5	-	2384	6	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	129	-4	intron_retention	FALSE	canonical	3	315	junction_5	48.8032785783906	4	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAAGTGCCTTTCCGTCT	NA	False	NA	NA	False	NA	NA	NA	34794022	34790996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34793469_34793753_34793851_34793937
36984	chr14	+	1614	6	Antisense	novelGene_ENSMUSG00000021792.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	908	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCGCCTACGCCACCAC	NA	False	NA	NA	False	NA	NA	NA	40715691	40735784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_40716594_40719668_40719834_40720800_40720944_40724393_40724485_40725997_40726181_40735654
36985	chr19	+	3377	10	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	581	-105	combination_of_known_junctions	FALSE	canonical	3	43	junction_2	84.2049234653323	1	143	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCCCAATCCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	10503348	10524912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10503425_10509144_10509364_10509621_10509699_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
36986	chr7	-	413	1	FSM	ENSMUSG00000086477.4	ENSMUST00000208646.2	3664	1	1388	1863	934	784	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTAAGACACCCAGCAGTA	9745	False	NA	NA	False	NA	NA	NA	98350707	98350294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98350300_98350700
36987	chr1	-	2623	12	FSM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	79	2868	14	483	multi-exon	FALSE	canonical	3	56	junction_4	6.18449140061635	4	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGCTTTGCCTGCGTTT	NA	False	NA	NA	False	NA	NA	NA	192812501	192789577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
36988	chr11	-	1988	9	NNC	ENSMUSG00000007646.14	novel	3944	9	NA	NA	204	33	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	49.5700262255327	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTGTGTGTATATGTA	NA	False	NA	NA	False	NA	NA	NA	87295045	87269383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87294868
36990	chr8	-	1643	8	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	-10	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	284.663137832801	2	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	NA	False	NA	NA	NA	31658740	31649490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_31650606_31650786_31650835_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
36991	chr8	-	2199	11	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-12	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.069434878567	1	81	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATAGACCCAGCCACT	NA	False	NA	NA	False	NA	NA	NA	96615032	96590776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591182_96591350_96591872_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
36993	chr4	-	2654	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	17	-32	-2	32	multi-exon	FALSE	canonical	3	109	junction_1	14.396180048888	181	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATATGTGTATGTATATA	NA	False	NA	NA	False	NA	NA	NA	129512875	129508886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
36994	chr6	+	2388	9	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	93	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGAGCCTGGGAGGCTAT	1078	False	NA	NA	False	NA	NA	NA	122295257	122302684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296503_122296854_122297007_122297170_122297283_122297896_122298011_122298830_122299043_122299283_122299436_122299972_122300777_122302418
36995	chr9	+	2371	11	NNC	ENSMUSG00000055720.11	novel	880	9	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	100.532034695414	11	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	57818968	57837251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57828032_57828155_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
36996	chr1	+	2236	5	Antisense	novelGene_ENSMUSG00000026193.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGACATCTAATTCTGA	NA	False	NA	NA	False	NA	NA	NA	71679226	71686015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_71679607_71680313_71680488_71681110_71681291_71682118_71682310_71684704
36997	chr11	+	1494	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	63	-36	multi-exon	FALSE	canonical	3	1960	junction_1	0	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTGGACAGTCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653682	120655209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
36998	chr6	-	2218	7	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	-2	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	833.564967807282	2	86	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAAATAAAAGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	148847910	148822567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148822928_148823316_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
37001	chr19	-	777	3	NNC	ENSMUSG00000007338.11	novel	1311	3	NA	NA	1894	-343	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	455.5	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTATTGTTTGCTGTTC	NA	False	NA	NA	False	NA	NA	NA	6105215	6104269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6104520_6104595_6105013_6105105
37002	chr16	+	2394	10	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	-3	3	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	33.4265363645911	68	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTACTGTCTTTTATGA	NA	False	NA	NA	False	NA	NA	NA	10010807	10060918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_10010890_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
37003	chr17	+	3384	6	NIC	ENSMUSG00000005936.20	novel	2534	8	NA	NA	4662	-3	intron_retention	FALSE	canonical	3	151	junction_1	154.680832684596	2	96	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCCCTCTCTCCAGTA	NA	False	NA	NA	False	NA	NA	NA	29176851	29186900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29177032_29180387_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
37004	chr10	-	1746	11	NIC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	5	-4	combination_of_known_junctions	FALSE	canonical	2	8	junction_7	88.8560633834293	790	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATATATCTGTTTAATG	NA	False	NA	NA	False	NA	NA	NA	89568152	89547836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561816_89562498_89562623_89564015_89564085_89564761_89564880_89568035
37005	chr9	-	2130	11	NNC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	53.3310416174295	690	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACCATGGACTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	107215532	107204289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214237_107214578_107215479
37006	chrX	-	3176	9	Antisense	novelGene_ENSMUSG00000000134.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACCGGCTTCGGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	7640770	7628795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_7628868_7631743_7631858_7632791_7633093_7633675_7633922_7634129_7634235_7635666_7635786_7637011_7637070_7637233_7637310_7638685
37007	chrX	+	1409	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	98	-205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1870.2328330986	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATCCCATTTAAATTCCT	NA	False	NA	NA	False	NA	NA	NA	105230866	105247062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240535_105241432_105241603_105243296_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
37008	chr19	+	1218	9	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	1174	462	-1	-462	3prime_fragment	FALSE	canonical	3	8704	junction_3	383.621700865579	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCTGGTTCGAGAGTACT	2017	False	NA	NA	False	NA	NA	NA	8945578	8955381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
37009	chr15	-	2543	10	NIC	ENSMUSG00000023021.16	novel	2096	10	NA	NA	26	-8	intron_retention	FALSE	canonical	3	38	junction_2	75.4335616434901	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCTAAGTTGCCTTAGTT	NA	False	NA	NA	False	NA	NA	NA	99670317	99632769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99634318_99636545_99636612_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
37010	chr2	+	2351	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	48	25	-46	-25	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	1	108	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAATAAAACATTTTGTT	8617	False	NA	NA	False	NA	NA	NA	72306550	72317212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
37011	chr11	+	2881	16	NNC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	8	1098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	227.612438636868	1	140	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCAGACTGGGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	4110362	4130517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123229_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
37012	chr4	+	3565	8	NNC	ENSMUSG00000028278.15	novel	5055	8	NA	NA	-67	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	46.2561634062016	16	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTCTTGAAGTGGGGT	7	True	NA	NA	False	NA	NA	NA	32983386	33022176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646_33019342_33020430
37014	chr4	-	2553	16	NNC	ENSMUSG00000040359.15	novel	628	8	NA	NA	-20	-3004	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	55.1988727743199	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCCCAGACAGAAGTGCA	-7	True	NA	NA	False	NA	NA	NA	25281783	25253150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_25253858_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
37016	chr14	+	2911	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	12246	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	37.0706272533751	129	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	NA	False	NA	NA	NA	121504565	121521156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121504809_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
37018	chr2	+	1774	9	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	95.7378419173944	2	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	80	False	NA	NA	False	NA	NA	NA	13579121	13587637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584342_13584872_13585050_13585450_13585495_13586423_13586510_13587283
37019	chr5	-	2201	7	NNC	ENSMUSG00000040731.14	novel	2726	7	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	801.478720172213	5	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGCTTGTCTTTCTGGC	2199	False	NA	NA	False	NA	NA	NA	134668182	134648729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_134650287_134650434_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
37020	chr4	-	1610	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	30	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	323.722409399021	2	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATAGCCCCATGCTGGT	2522	False	NA	NA	False	NA	NA	NA	129229133	129203314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222463_129228289_129228438_129229010
37021	chr2	+	2885	22	NNC	ENSMUSG00000027303.19	novel	3066	22	NA	NA	-2	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	52.0751680674359	109	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGATTCCCTGAGGAAAT	157	False	NA	NA	False	NA	NA	NA	130292461	130395927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130292479_130345393_130345473_130345913_130346256_130359650_130359736_130360869_130360944_130361291_130361429_130374008_130374100_130375003_130375081_130377242_130377280_130379471_130379570_130381554_130381675_130382402_130382447_130382505_130382570_130383214_130383351_130384226_130384377_130385989_130386084_130386340_130386418_130386868_130387004_130391404_130391531_130391610_130391763_130394116_130394253_130395313
37022	chr9	-	3032	12	NNC	ENSMUSG00000049624.15	novel	3236	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.2615145664076	52	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78495313	78443769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78445282_78445475_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
37023	chrX	+	1987	4	NNC	ENSMUSG00000045427.14	novel	2364	4	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	371.760675704142	18	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	NA	NA	NA	133501988	133507803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133502083_133503440_133503512_133505603_133506521_133506898
37024	chr4	-	1745	2	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	55812	-398	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAAATGAAAAATAGT	NA	False	NA	NA	False	NA	NA	NA	134944313	134941677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134941920_134942810
37025	chr7	+	2623	6	NNC	ENSMUSG00000109398.3	novel	2950	5	NA	NA	2281	-344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.7086164228309	16	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGTTTGTGTGTGTG	5303	False	NA	NA	False	NA	NA	NA	6349048	6358611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6349257_6349343_6349432_6351435_6351563_6352716_6352813_6356420_6358337_6358423
37026	chr16	-	3185	6	NNC	ENSMUSG00000022505.10	novel	3440	5	NA	NA	19	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.6164810290813	1	89	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTTGGATAATTGTAT	NA	False	NA	NA	False	NA	NA	NA	10131716	10099621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10100382_10100511_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
37028	chr13	-	2939	17	FSM	ENSMUSG00000021635.15	ENSMUST00000177848.3	2392	17	-235	-312	-231	-3	multi-exon	FALSE	canonical	3	174	junction_16	17.1335516968899	306	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTTGTTCTTCTTATCC	NA	False	NA	NA	False	NA	NA	NA	100787790	100753674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
37029	chr15	-	3504	15	NIC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	4448	-7	intron_retention	FALSE	canonical	3	15	junction_5	5.44405686065464	1	142	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAAGCTGTGTCAGCCCC	8149	False	NA	NA	False	NA	NA	NA	98556291	98543021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98550420_98550768_98550863_98554482_98554594_98556110
37030	chr11	-	1155	1	FSM	ENSMUSG00000101841.2	ENSMUST00000121861.2	820	1	-16	-319	-16	319	mono-exon	FALSE	NA	NA	NA	NA	NA	1031	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCATCT	NA	False	NA	NA	False	NA	NA	NA	9100613	9099458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_9099500_9100600
37031	chr12	+	1731	5	NIC	ENSMUSG00000021037.8	novel	1933	6	NA	NA	1068	1	intron_retention	FALSE	canonical	3	2699	junction_3	143.312595399009	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	NA	False	NA	NA	NA	87317143	87320754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
37032	chr7	-	1400	6	NNC	ENSMUSG00000030641.11	novel	840	7	NA	NA	-2	-463	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	87.9236032018706	5	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTAGTACCATCATTTA	NA	False	NA	NA	False	NA	NA	NA	92523386	92509819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_92510726_92511532_92511695_92515778_92515908_92517319_92517410_92521977_92522053_92523348
37033	chr4	+	1608	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	10	0	10	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1524	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTTGAAATAATTTGC	NA	False	NA	NA	False	NA	NA	NA	86493914	86495522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_86493900_86495500
37034	chr5	+	2526	16	FSM	ENSMUSG00000005514.15	ENSMUST00000005651.13	2636	16	110	0	-12	0	multi-exon	FALSE	canonical	3	231	junction_9	23.2776478384069	586	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	2011	False	NA	NA	False	NA	NA	NA	135717999	135764180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
37037	chr5	+	1155	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	37	0	14	0	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	1235	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	124254198	124256259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
37041	chr8	-	1988	12	NNC	ENSMUSG00000057788.14	novel	2137	13	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	84.5538607746614	13	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGAATCCAATAGCTAC	9949	False	NA	NA	False	NA	NA	NA	70755121	70745515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750739_70750817_70753628_70753753_70754972
37043	chr17	+	2592	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	-14	-4	-14	4	multi-exon	FALSE	canonical	3	80	junction_1	22.3271135617661	202	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCTCTCTCTCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	21670621	21685853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
37044	chr2	+	1050	4	ISM	ENSMUSG00000090077.10	ENSMUST00000048077.12	1959	5	999	7	-252	-2	intron_retention	FALSE	canonical	3	53	junction_2	12.0369800568452	7	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATAAGGTTGGCTCTTGG	NA	False	NA	NA	False	NA	NA	NA	181024026	181025414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_181024108_181024279_181024338_181024408_181024497_181024591
37045	chr12	-	1591	4	NNC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-167	-71	intron_retention	FALSE	canonical	0	0	junction_3	28.9865869364129	1	53	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCACCCTACCAGCTCCT	NA	False	NA	NA	False	NA	NA	NA	77009142	76985035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76986289_76986740_76986865_76999942_77000051_77009036
37046	chr9	+	2303	3	FSM	ENSMUSG00000032103.11	ENSMUST00000121246.2	2016	3	17	-304	17	5	multi-exon	FALSE	canonical	3	99	junction_2	2.5	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTCTTTTTCAAGGC	NA	False	NA	NA	False	NA	NA	NA	35470778	35478439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_35470814_35476079_35476494_35476585
37047	chrX	-	1659	9	NNC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	600.897960867733	4697	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGTTGGCATGAGTC	NA	False	NA	NA	False	NA	NA	NA	72140662	72129902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72130980_72132965_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
37048	chr14	-	1495	10	NNC	ENSMUSG00000060373.16	novel	1683	9	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	1562.49337776374	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATCAACTGTCTCCAA	8750	False	NA	NA	False	NA	NA	NA	52341460	52312261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52335837_52336002_52341345
37049	chr6	-	1780	12	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	132.928800926295	11	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGAGCCTGTTGTTGGG	6992	False	NA	NA	False	NA	NA	NA	88818854	88812897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
37050	chr14	-	822	3	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	931.5	5	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8642	False	NA	NA	False	NA	NA	NA	54855461	54851575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54851939_54853971_54854220_54855250
37051	chr7	-	2811	18	NNC	ENSMUSG00000001248.16	novel	2735	19	NA	NA	11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	106.006071511173	21	34	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTATGGCTTGTACCTGTG	4710	False	NA	NA	False	NA	NA	NA	30851483	30829554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30834950_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30851261
37052	chr12	+	2113	20	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	63.939159100523	26	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	17398486	17480096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466934_17479863
37053	chr15	+	1741	13	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	108	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	480.817244098236	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGACTGGGACCCTTGAT	NA	False	NA	NA	False	NA	NA	NA	85220553	85347409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220651_85220728_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260898_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
37054	chr8	-	1774	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	10	-1375	0	-2	multi-exon	FALSE	canonical	3	281	junction_1	12.1928941054479	1351	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTGTGTGTGTGTGTGT	7429	False	NA	NA	False	NA	NA	NA	84169124	84161125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
37055	chr6	-	3821	8	NNC	ENSMUSG00000037826.6	novel	5560	7	NA	NA	-16	-1528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.52545131594678	24	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCAAACATTAAAAATGACA	NA	False	NA	NA	False	NA	NA	NA	57512469	57485014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_57485299_57485567_57487835_57490926_57491062_57491958_57492104_57492577_57492744_57499733_57499835_57501721_57502240_57512264
37056	chr6	-	1330	5	NNC	ENSMUSG00000030057.16	novel	2178	5	NA	NA	11	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4842.2987051606	7	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGACAGTTTGGACTTT	NA	False	NA	NA	False	NA	NA	NA	87828030	87820062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87820914_87822206_87822306_87822442_87822540_87822637_87822776_87827885
37057	chrX	+	2609	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	22	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	209.742817723937	1	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCTGCAACTTTTT	NA	False	NA	NA	False	NA	NA	NA	158315736	158375220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342957_158350080_158350362_158350914_158351011_158357940_158358094_158375066
37058	chr15	+	2460	9	FSM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	58	0	22	0	multi-exon	FALSE	canonical	3	157	junction_8	15.0742951742362	215	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	84921347	84947031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
37059	chrX	+	3056	21	NNC	ENSMUSG00000041229.16	novel	6359	22	NA	NA	-159	-3468	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	22.6141548592911	4	52	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGGCAAATCGCAGCAC	NA	False	NA	NA	False	NA	NA	NA	150304005	150413385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150304085_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145
37060	chr4	+	1288	8	NNC	ENSMUSG00000054405.15	novel	1837	8	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1096.40605840079	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGATGGTCTCCTCCT	2350	False	NA	NA	False	NA	NA	NA	132262879	132281048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132262975_132265497_132265600_132269092_132269140_132271979_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
37061	chr17	+	1887	5	NIC	ENSMUSG00000002767.14	novel	1031	7	NA	NA	-6	-3	intron_retention	FALSE	canonical	3	984	junction_3	85.9109277100416	6	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTCTTACTACCTTTT	NA	False	NA	NA	False	NA	NA	NA	46957162	46961054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46957325_46958315_46958485_46959162_46959514_46959584_46959696_46959960
37062	chr17	+	2441	16	ISM	ENSMUSG00000023809.11	ENSMUST00000024575.8	5406	21	81438	2263	-4308	-2263	3prime_fragment	FALSE	canonical	3	147	junction_14	15.2359224641416	1	38	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCCTTAACCCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	7518951	7568451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_7519046_7521810_7521849_7523229_7523373_7528402_7528474_7529526_7529616_7538990_7539056_7544861_7544965_7549167_7549299_7550142_7550269_7556313_7556404_7558028_7558188_7560144_7560307_7562601_7562679_7563413_7563532_7566681_7566820_7567614
37063	chr1	-	1762	15	NIC	ENSMUSG00000026209.16	novel	1571	15	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	248.176831706584	66	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	75293971	75285208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293725
37065	chr13	+	1162	4	Antisense	novelGene_ENSMUSG00000045136.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGAGGGCCGGGTGGGTTC	NA	False	NA	NA	False	NA	NA	NA	34311750	34314337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34312514_34312853_34312969_34313231_34313340_34314161
37067	chr15	-	3318	9	FSM	ENSMUSG00000009035.16	ENSMUST00000074991.10	3627	9	309	0	-4	0	multi-exon	FALSE	canonical	3	271	junction_8	29.0298876160415	135	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGCCAGCGAGGTT	NA	False	NA	NA	False	NA	NA	NA	79287460	79244883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79247086_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
37068	chr8	+	2715	3	ISM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	181	15	-26	-15	intron_retention	FALSE	canonical	3	543	junction_2	1	7	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTTCATCTAGATTGTT	5897	False	NA	NA	False	NA	NA	NA	84682316	84696811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84682567_84691659_84691776_84694462
37069	chr8	-	1554	4	NIC	ENSMUSG00000031604.11	novel	2044	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	338.098933581413	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	65186612	65171172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_65172216_65173375_65173531_65180657_65180943_65186541
37070	chr19	+	2028	11	NNC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	54.6512579910106	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6891	False	NA	NA	False	NA	NA	NA	8719118	8733006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8719486_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
37071	chr2	+	1488	11	ISM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	10813	709	-42	-709	3prime_fragment	FALSE	canonical	3	3731	junction_2	254.318619058849	1	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGTCGTTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	121255068	121268459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
37072	chr7	+	2144	7	NIC	ENSMUSG00000058454.16	novel	2556	9	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	154.04265282346	9	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	143383950	143402147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_143384003_143390374_143390467_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
37073	chr4	-	3491	22	NIC	ENSMUSG00000029016.14	novel	3306	23	NA	NA	37	139	combination_of_known_splicesites	FALSE	canonical	2	5	junction_21	39.6908689671199	3	100	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTTGGATTCATTCCC	7710	False	NA	NA	False	NA	NA	NA	148122982	148090451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095234_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148122602
37074	chr12	+	3894	4	FSM	ENSMUSG00000020653.13	ENSMUST00000020982.7	4086	4	185	7	185	-7	multi-exon	FALSE	canonical	3	234	junction_3	19.258475767539	134	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGAGTGATGTGTTATA	NA	False	NA	NA	False	NA	NA	NA	24701457	24712781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24701566_24703557_24703810_24704841_24705776_24710181
37075	chr4	-	3527	7	Intergenic	novelGene_2019	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	253	52	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTCCTCAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	145599361	145241410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_145241569_145311872_145312274_145453853_145453960_145468542_145468624_145509338_145511532_145511699_145512114_145599187
37077	chr1	+	3355	6	Antisense	novelGene_ENSMUSG00000026107.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	218	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGAACGCTCCCTCAGGCC	NA	False	NA	NA	False	NA	NA	NA	51508134	51517558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_51510570_51511486_51511536_51512155_51512241_51513692_51513762_51516633_51516778_51516985
37078	chr9	-	3619	3	NNC	ENSMUSG00000051705.14	novel	3792	3	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19	151	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGTCTCTGTCTCCT	6438	False	NA	NA	False	NA	NA	NA	59657912	59641543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_59643946_59643986_59645152_59657860
37079	chr14	-	2307	6	NIC	ENSMUSG00000002320.16	novel	2517	6	NA	NA	-16	-8	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	134.620057940858	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAAGGATCCTGTCGT	4724	False	NA	NA	False	NA	NA	NA	55881279	55873432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55881053
37080	chr14	+	1137	4	NNC	ENSMUSG00000079184.11	novel	416	2	NA	NA	13	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	420.021428024809	3	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATTAAAAACCTTTTGA	1791	False	NA	NA	False	NA	NA	NA	56905717	56934860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56905926_56909921_56910018_56911347_56912148_56934827
37082	chr9	-	1516	9	NNC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	19	1522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	569.715375757931	92	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	21061219	21050726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21051148_21051214_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
37083	chr1	+	2580	21	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	143.893111370906	1	84	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	45834665	45862779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845975_45846885_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
37085	chr13	-	1055	1	Antisense	novelGene_ENSMUSG00000021488.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTAATGGACTGGGACTG	NA	False	NA	NA	False	NA	NA	NA	55362962	55361907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55361900_55363000
37086	chr9	-	2256	21	NIC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	1	-3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_19	42.4109360896456	2	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCTGGTCTGTGCTGGT	NA	False	NA	NA	False	NA	NA	NA	107971674	107962615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107971425_107971559_107971633
37090	chr7	-	1680	11	Antisense	novelGene_ENSMUSG00000030539.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCATCCTCCAGAATGAC	8470	False	NA	NA	False	NA	NA	NA	79876142	79866138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_79866188_79866476_79866593_79866697_79866846_79868628_79868812_79868932_79869084_79869867_79870077_79870186_79870305_79870534_79870699_79873677_79873763_79874341_79874547_79875890
37091	chr11	+	1376	9	FSM	ENSMUSG00000020407.14	ENSMUST00000020677.8	1277	9	-97	-2	-97	-1	multi-exon	FALSE	canonical	3	18	junction_1	932.389931506663	46	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTGTGTGACTCTGCGG	NA	False	NA	NA	False	NA	NA	NA	9068005	9086166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_9068285_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
37092	chr1	-	2982	8	FSM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	15	1544	2	8	multi-exon	FALSE	canonical	3	51	junction_6	17.6704526812185	121	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTTTATCTCAAGTATT	NA	False	NA	NA	False	NA	NA	NA	162376105	162361239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373336_162374097_162375672
37093	chr9	-	1854	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	730	-88	-9	3	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	791	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGTGGAAAGCCAAGTGT	9798	False	NA	NA	False	NA	NA	NA	57672413	57657903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
37094	chr15	+	1662	9	FSM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-142	3	-40	-1	multi-exon	TRUE	canonical	3	312	junction_3	28.7706447616316	1102	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCCCTTGTTCTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	102426751	102432108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
37095	chr1	+	3759	9	NIC	ENSMUSG00000026349.15	novel	4511	10	NA	NA	39	-1198	intron_retention	FALSE	canonical	3	163	junction_8	111.086396556914	1	133	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGACTGTGCATTGTACCT	NA	False	NA	NA	False	NA	NA	NA	127701939	127732471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127731031_127731128
37096	chr8	-	1930	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-11	0	intron_retention	FALSE	canonical	3	12	junction_10	64.1737053847596	723	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	NA	NA	NA	106578651	106571304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576182_106576257_106576556_106578502
37097	chr7	-	1240	6	NNC	ENSMUSG00000030654.10	novel	2171	6	NA	NA	1932	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	948.691519936802	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCACTTTCTTTGTTAAC	NA	False	NA	NA	False	NA	NA	NA	117726401	117718118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_117718365_117719007_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356
37098	chr5	+	2223	3	NIC	ENSMUSG00000041453.13	novel	1067	6	NA	NA	7	-2	intron_retention	FALSE	canonical	3	8667	junction_2	2651.5	78	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGTGAAGTGTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	146769962	146772793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_146771915_146772373_146772525_146772673
37099	chr9	-	4252	9	NNC	ENSMUSG00000036943.10	novel	4733	8	NA	NA	-8	-442	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.1779399272855	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTGTGCCATATGCCAA	7743	False	NA	NA	False	NA	NA	NA	66826977	66751387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_66752477_66752523_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
37100	chr11	-	1971	11	NIC	ENSMUSG00000035086.14	novel	4365	12	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	144.198509007548	6	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	NA	False	NA	NA	NA	101193096	101179087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101192553_101192683_101192957
37101	chr13	-	2480	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9921	345	intron_retention	FALSE	canonical	3	18	junction_2	15.0598804776134	165	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTACTGCTTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	66846337	66830557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66832305_66833395_66833621_66834628_66834801_66836256_66836399_66841838_66841917_66846221
37102	chr14	-	1966	19	NNC	ENSMUSG00000022040.9	novel	2035	19	NA	NA	15	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	50.5050113636212	7	25	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTTTCTTGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	66361934	66321826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324457_66325741_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
37105	chr19	-	780	3	ISM	ENSMUSG00000060803.7	ENSMUST00000237273.2	532	4	-27	-33	2	33	intron_retention	FALSE	canonical	3	2720	junction_1	363	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGACCTTCGCGGCAAAT	NA	False	NA	NA	False	NA	NA	NA	4087923	4086733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4086792_4087103_4087192_4087289
37106	chr5	-	1474	6	NNC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	-1	intron_retention	TRUE	non_canonical	0	0	junction_2	328.107665256391	27	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGCTTGCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	130284373	130274572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_130275303_130277126_130277184_130277258_130277292_130279654_130279856_130282779_130282910_130284050
37107	chr7	+	1738	7	ISM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	924	-2	68	2	3prime_fragment	FALSE	canonical	3	276	junction_3	12.6359276140166	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATAAGCACTCGAATCAG	234	False	NA	NA	False	NA	NA	NA	141048258	141051378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
37108	chr2	-	2772	22	NNC	ENSMUSG00000037773.15	novel	3349	4	NA	NA	-19016	-2538	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	103	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGGATTCCAGTTCGCAG	NA	False	NA	NA	False	NA	NA	NA	130285637	130266347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130266366_130279539_130279642_130279840_130279930_130280016_130280146_130280226_130280370_130280486_130280604_130280701_130280824_130280963_130281021_130281354_130281446_130281539_130281633_130281758_130281836_130282148_130282660_130282816_130282947_130283082_130283216_130283312_130283422_130283525_130283622_130283709_130283824_130284103_130284159_130284243_130284427_130284508_130284603_130285214_130285318_130285431
37109	chr9	-	5901	6	NNC	ENSMUSG00000025786.18	novel	600	7	NA	NA	5262	39	intron_retention	FALSE	non_canonical	0	0	junction_5	109.232962058163	135	69	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATCCTTTCAATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	122924152	122907065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122922404_122923189
37112	chr17	-	2119	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	-19	0	-9	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	983	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	NA	False	NA	NA	NA	46991849	46985475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
37113	chr4	+	2540	10	NIC	ENSMUSG00000066037.15	novel	21452	11	NA	NA	0	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	209.322953269421	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACATCACCTATTTCAA	NA	False	NA	NA	False	NA	NA	NA	136038278	136067982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_136038401_136041397_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136059708_136059915_136063608_136063759_136066486_136066609_136066729
37115	chrX	+	2901	6	NIC	ENSMUSG00000023092.17	novel	2356	7	NA	NA	1	-4	intron_retention	FALSE	canonical	3	131	junction_4	5.23832034148352	2	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAAAGAGCACGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	55777147	55838694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55835407_55835823_55836011_55837203
37117	chr14	-	2837	18	NNC	ENSMUSG00000046753.11	novel	4262	18	NA	NA	-18	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	24.3114167151765	4	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTTGTCATGTTAGG	7508	False	NA	NA	False	NA	NA	NA	27230435	27204360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215351_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
37118	chr9	+	1666	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	7	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	713.768132341002	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1155	False	NA	NA	False	NA	NA	NA	108437644	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440526_108440631_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
37119	chr7	-	3041	20	FSM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	11	13	-8	-5	multi-exon	FALSE	canonical	3	140	junction_17	13.3084023611853	228	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTAAAAAAAATGTGCTT	NA	False	NA	NA	False	NA	NA	NA	35017854	34975973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_34976237_34980756_34980906_34982995_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
37120	chr6	-	5030	8	FSM	ENSMUSG00000030020.14	ENSMUST00000113446.8	7860	8	-2	2832	-2	1642	multi-exon	FALSE	canonical	2	9	junction_7	6.08779307218929	18	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGAGGGAAAATAGATC	NA	False	NA	NA	False	NA	NA	NA	92511844	92350722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_92353802_92387737_92388614_92393716_92393904_92397123_92397328_92399311_92399450_92402560_92402675_92435455_92435640_92511596
37121	chr2	-	3270	16	NNC	ENSMUSG00000027291.16	novel	4339	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	77.1240270963307	4	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCTTGAGCCTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	120183602	120146941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120148591_120149946_120150039_120151132_120151268_120151367_120151518_120152090_120152137_120152338_120152442_120153513_120153643_120154063_120154182_120154671_120154771_120155111_120155186_120155666_120155754_120155866_120156009_120156486_120156631_120159053_120159108_120180669_120180711_120183395
37122	chr11	+	1193	4	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	8	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5317.44299452284	3	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3043	False	NA	NA	False	NA	NA	NA	75623746	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642837_75655456_75656190_75656245
37123	chr5	+	3681	13	FSM	ENSMUSG00000018001.19	ENSMUST00000116456.10	3738	13	52	5	-2	-5	multi-exon	FALSE	canonical	3	61	junction_12	7.06468132488807	61	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACTGCCTAAGACTCAA	NA	False	NA	NA	False	NA	NA	NA	143608253	143696000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143683470_143683552_143687073_143687187_143687351_143687501_143688568_143688681_143692838_143692916_143692993_143693066_143693149_143693305_143693587
37124	chr13	-	2806	5	NNC	ENSMUSG00000055560.9	novel	3334	4	NA	NA	-18	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.6339261751398	236	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAGTTTAAAATAACCTT	NA	False	NA	NA	False	NA	NA	NA	67569555	67553843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67554743_67555272_67556862_67561226_67561323_67561952_67562080_67569460
37125	chr1	-	1930	9	NNC	ENSMUSG00000003051.14	novel	2095	9	NA	NA	-16	-42	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	213.500841625976	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATGGAGGCTCCAATAAA	NA	False	NA	NA	False	NA	NA	NA	135186192	135181358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184324_135184516_135184613_135184742_135185025_135185352_135185521_135186086
37128	chr3	-	3306	27	NNC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	11	-83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	212.717932105061	1	122	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTGAGTCTGCATGTAAG	NA	False	NA	NA	False	NA	NA	NA	100069702	100045578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100046159_100046374_100046469_100047503_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051735_100051870_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069664
37129	chr9	-	1814	8	Antisense	novelGene_ENSMUSG00000089571.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCGCTTCCGGCGCACACC	NA	False	NA	NA	False	NA	NA	NA	20803473	20799564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_20799876_20800635_20800735_20800928_20800979_20801064_20801237_20801933_20802012_20802200_20802660_20802744_20803042_20803125
37130	chr1	+	1592	6	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	-270	0	intron_retention	FALSE	canonical	3	3085	junction_3	1087.14407508849	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGTGAAGTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	160863319	160866105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863375_160863552_160863585_160863777_160864886_160865074_160865118_160865564_160865608_160865794
37131	chr5	+	2188	12	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1494	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	705.133045297303	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCAGTGCTTCCAGAT	NA	False	NA	NA	False	NA	NA	NA	21991774	22008780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006963_22007338_22007605_22008067_22008271_22008363_22008461_22008544
37132	chr5	+	1694	1	Antisense	novelGene_ENSMUSG00000029500.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACCACATGGTGGCTCAC	NA	False	NA	NA	False	NA	NA	NA	110407041	110408735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_110407000_110408700
37134	chr9	+	1907	6	NNC	ENSMUSG00000032249.15	novel	2113	7	NA	NA	53	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	220.838945840628	322	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATACAATTTTTTGGG	NA	False	NA	NA	False	NA	NA	NA	62248663	62286073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62281996_62284865
37135	chr17	-	1847	10	FSM	ENSMUSG00000024246.10	ENSMUST00000025093.6	1833	10	-12	-2	3	2	multi-exon	FALSE	canonical	3	99	junction_3	16.3940669785982	235	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGCTTATAGACTCTT	8152	False	NA	NA	False	NA	NA	NA	81372508	81333758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
37138	chrX	+	1766	13	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-5	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.352867931896	1	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543392	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543452_161543637_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
37139	chr5	-	3584	28	NNC	ENSMUSG00000029086.16	novel	3966	28	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.37463018449312	31	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACAGAGCTTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	44259028	44150972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_44151236_44151311_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
37140	chr1	+	2983	8	FSM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	136	4	43	-1	multi-exon	FALSE	canonical	3	879	junction_4	75.4485904170407	281	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGATGTCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	134343251	134361085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134343324_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
37141	chr7	+	2090	7	NIC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	5	-1	intron_retention	FALSE	canonical	3	5787	junction_3	294.804266515184	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAGGCATGCTAATGGGA	NA	False	NA	NA	False	NA	NA	NA	142606535	142621652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_142606804_142616229_142616345_142618945_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
37142	chr10	+	2184	8	NNC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	72	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	135.451625524181	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATGTGGTGGCTCAAG	NA	False	NA	NA	False	NA	NA	NA	44144482	44240289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_44144581_44150636_44150691_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44222952_44223071_44238911
37143	chr19	-	2514	10	NIC	ENSMUSG00000024826.16	novel	3314	11	NA	NA	-7	343	intron_retention	FALSE	canonical	3	642	junction_2	68.264192663504	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTTCCAGGGTTTT	1359	False	NA	NA	False	NA	NA	NA	5962812	5948227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5956660_5957028_5957190_5962768
37144	chr7	+	1970	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-22	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	493	1	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	348	False	NA	NA	False	NA	NA	NA	44465784	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478166_44478639
37145	chr14	-	1269	8	ISM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	1336	1129	1336	-1129	3prime_fragment	FALSE	canonical	3	4955	junction_4	363.961031778213	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATATATTTTCATCTCT	NA	False	NA	NA	False	NA	NA	NA	36855760	36843909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589
37146	chr5	+	296	1	Intergenic	novelGene_865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGTAAGCCGAATAAACCC	NA	False	NA	NA	False	NA	NA	NA	135615525	135615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_135615500_135615800
37149	chr1	+	3146	8	FSM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	299	1	191	-1	multi-exon	FALSE	canonical	3	124	junction_1	322.905874956825	312	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGATGTCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	134343492	134361085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
37150	chr15	+	2138	8	NNC	ENSMUSG00000023010.16	novel	2452	10	NA	NA	1042	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	641.164660948324	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	4762	False	NA	NA	False	NA	NA	NA	99300007	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99300051_99302298_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
37153	chr2	+	3487	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	96	-2202	90	2202	multi-exon	FALSE	canonical	3	71	junction_2	178.5	4	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCCTACCTCTAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	119424873	119433429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119424916_119426739_119426824_119430068
37155	chr5	+	2508	13	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_6	45.4357757964164	3	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	NA	NA	NA	146168007	146239684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_146168145_146196314_146196391_146205024_146205097_146208404_146208546_146220438_146220497_146222917_146223050_146229463_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
37156	chrUn_JH584304v1	-	1905	8	Intergenic	novelGene_4624	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_6	357.665046816551	1	37	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCGAGAGAATGGCCAACAAT	NA	False	NA	NA	False	NA	NA	NA	59721	52202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_54480_54720_54868_55111_55249_55511_55702_56985_57010_58671_58836_59587
37157	chr8	-	1372	6	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-243	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	498.999559118042	1	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTATTGTGTCTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	85573498	85568721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569402_85571283_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
37158	chr16	+	2937	23	Antisense	novelGene_ENSMUSG00000064565.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTTCCCTGGGCGACCC	NA	False	NA	NA	False	NA	NA	NA	10955201	10994173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_10955352_10956886_10957055_10958582_10958715_10959526_10959638_10963107_10963147_10963507_10963642_10964228_10964304_10965128_10965313_10966306_10966410_10967074_10967272_10968458_10968620_10969001_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974425_10976416_10976457_10976546_10976627_10976828_10976988_10978866_10979064_10980501_10980542_10982453_10982563_10994087
37159	chr18	-	2881	2	ISM	ENSMUSG00000033184.15	ENSMUST00000151189.2	1348	3	4154	-2091	3933	-2	3prime_fragment	FALSE	canonical	3	571	junction_1	0	321	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATTGCCTTCACTTGTT	1907	False	NA	NA	False	NA	NA	NA	46726448	46719007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_46721756_46726315
37160	chr17	-	2071	6	NIC	ENSMUSG00000024459.19	novel	2459	4	NA	NA	11	1	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	104.148739790744	3	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAGAGTTTTTAATACGG	NA	False	NA	NA	False	NA	NA	NA	37300418	37294951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396_37299673_37299826_37300097_37300320
37161	chr11	-	3626	19	FSM	ENSMUSG00000020806.16	ENSMUST00000103029.10	3593	19	-44	11	3	-7	multi-exon	FALSE	canonical	2	65	junction_12	15.7409586041568	132	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTATTAAAATGCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	116515070	116489001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116490265_116490886_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495203_116495333_116495786_116495991_116496068_116496265_116496933_116497059_116498053_116498254_116501129_116501306_116515003
37162	chr15	-	1724	5	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	23648	-364	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	331.141491661797	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	51831258	51825999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51827201_51827429_51827644_51828350_51828435_51829977_51830128_51831183
37164	chr5	+	3374	7	NNC	ENSMUSG00000053094.16	novel	3570	7	NA	NA	32	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	202.438468017651	210	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTGCCGTTTTAATT	9049	False	NA	NA	False	NA	NA	NA	130251207	130272506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130251264_130258302_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
37165	chr6	+	2652	14	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	-9	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	668.168972003287	1	129	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAAACTGAGTACTCTA	NA	False	NA	NA	False	NA	NA	NA	71808353	71852230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833901_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71845549_71845791_71848410_71848553_71849789_71849908_71851300
37166	chr15	+	2581	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	7	-10	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	65.1689163199833	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTCAACCCTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	84921409	84947021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_84921446_84922972_84923166_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
37167	chr18	-	1305	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	8	772	8	361	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAAGAACCTGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	38472021	38461374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
37168	chr13	+	1763	5	ISM	ENSMUSG00000021361.8	ENSMUST00000021790.7	914	6	44	6	44	-6	intron_retention	FALSE	canonical	3	613	junction_2	48.6492548761027	40	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTCTCTGGTGTCGTCTT	NA	False	NA	NA	False	NA	NA	NA	41169811	41176056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594
37169	chr18	-	2124	5	NNC	ENSMUSG00000024487.6	novel	3328	6	NA	NA	20	-971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	131.296182351202	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTCCAGTTTTTGCTAG	NA	False	NA	NA	False	NA	NA	NA	40352371	40337919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_40339454_40340739_40340936_40345085_40345269_40351798_40351919_40352280
37170	chr2	+	1447	9	NIC	ENSMUSG00000059005.14	novel	1074	10	NA	NA	-1025	-74	intron_retention	TRUE	canonical	0	0	junction_6	3414.99442715504	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATATTTGTGTAGTTCAGT	9678	False	NA	NA	False	NA	NA	NA	75491807	75496109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75494016_75494059_75495371_75495495_75495577
37171	chr3	-	4003	10	NNC	ENSMUSG00000033439.13	novel	1723	11	NA	NA	10	4	intron_retention	FALSE	canonical	0	0	junction_8	49.3243235015838	3	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGTGAGGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	116388499	116374737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116375260_116376142_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386100_116386160_116388287
37172	chr19	-	382	2	ISM	ENSMUSG00000024792.10	ENSMUST00000160712.8	706	6	30	1939	1	-1594	5prime_fragment	FALSE	canonical	3	381	junction_1	0	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCAATAAATGGTCACTCA	6469	False	NA	NA	False	NA	NA	NA	6134944	6134229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6134492_6134824
37174	chr14	-	2454	4	ISM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	10680	10	241	0	3prime_fragment	FALSE	canonical	3	133	junction_2	4.18993502999218	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTTTATTTCATGTGT	NA	False	NA	NA	False	NA	NA	NA	52506322	52499225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098
37175	chrX	+	2855	7	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	104	-7	intron_retention	FALSE	canonical	3	157	junction_5	15.0959891656323	15	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAGGAGACACTGCCCAG	NA	False	NA	NA	False	NA	NA	NA	101846672	101853541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
37176	chr1	+	3065	4	NIC	ENSMUSG00000018196.19	novel	3337	4	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	251.93958711476	14	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTCCCGATTGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	143615343	143622511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_143615497_143617385_143617450_143618379_143620962_143622245
37177	chrX	-	3130	4	NIC	ENSMUSG00000045010.15	novel	1190	7	NA	NA	22	0	intron_retention	FALSE	canonical	3	142	junction_3	69.5317673201729	76	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCCGGCTCTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	100838007	100833658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100834130_100834212_100835250_100835786_100835944_100836542
37183	chrX	-	1890	10	NNC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.982283165902	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	138963307	138907553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_138907748_138907843_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
37184	chr1	+	1959	6	NIC	ENSMUSG00000053332.14	novel	1066	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	3576	junction_1	899.295146211743	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863815_160864118_160865608_160865794_160865843_160866026
37185	chr7	-	966	7	ISM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	1789	4	399	-4	3prime_fragment	FALSE	canonical	3	19253	junction_4	576.144874720471	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGAGTCTGTTGTTCATG	214	False	NA	NA	False	NA	NA	NA	126396524	126394411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508
37186	chr7	+	2542	5	NIC	ENSMUSG00000025464.16	novel	4655	7	NA	NA	307	0	intron_retention	FALSE	canonical	3	250	junction_4	15.1554445662277	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	NA	False	NA	NA	NA	139705927	139714247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
37187	chr5	-	1685	3	NNC	ENSMUSG00000029600.11	novel	733	3	NA	NA	1	-336	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.5	983	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTCTGTTTATGTGG	6335	False	NA	NA	False	NA	NA	NA	120750634	120748311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_120748987_120749080_120749795_120750338
37188	chrX	+	3734	5	NNC	ENSMUSG00000054994.3	novel	3698	5	NA	NA	33	72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	92.0787706260243	1	182	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATAACATATATTATTCTC	NA	False	NA	NA	False	NA	NA	NA	134395369	134405415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134395469_134395666_134395783_134400016_134400317_134401619_134402205_134402781
37189	chr12	-	1430	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	333	347	27	-344	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTCGTAGCTCTGGTAT	NA	False	NA	NA	False	NA	NA	NA	21467104	21440676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
37191	chr8	-	1915	8	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	26	-31	intron_retention	FALSE	canonical	3	350	junction_7	44.9107959385796	130	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTGCAAATAAACACATAT	NA	False	NA	NA	False	NA	NA	NA	110335026	110320139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110320764_110321251_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
37193	chr14	-	4060	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-44	1373	-44	-1373	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	233	92	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATCTTAAAAGTAAAAATA	NA	False	NA	NA	False	NA	NA	NA	76348244	76325048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
37194	chr11	+	2393	11	NIC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	2	-15	intron_retention	FALSE	canonical	3	1019	junction_3	100.383066301045	73	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTCTCCAGAGCTCCT	NA	False	NA	NA	False	NA	NA	NA	98573381	98586790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
37195	chr3	-	2374	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	-13	16	-13	-1	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	217	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAGAGCATTTATTTATTT	3571	False	NA	NA	False	NA	NA	NA	79536183	79511110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
37196	chrX	+	2110	8	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-3102	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	1240.70955669795	1	113	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100483094	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100489724_100489835_100491199
37197	chr10	+	2563	11	NIC	ENSMUSG00000019970.16	novel	2476	12	NA	NA	0	-19	intron_retention	FALSE	canonical	3	40	junction_1	278.452168244386	1	114	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAATAAAATCTTGAAAACT	NA	False	NA	NA	False	NA	NA	NA	21868121	21875771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
37198	chr19	+	971	6	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	2845	300	1670	-300	3prime_fragment	FALSE	canonical	3	8905	junction_3	360.182953511129	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTCCTGTCCTGCC	3688	False	NA	NA	False	NA	NA	NA	8947249	8955543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
37199	chr5	-	2604	17	FSM	ENSMUSG00000041740.17	ENSMUST00000112096.9	3112	17	502	6	-92	-1	multi-exon	FALSE	canonical	3	1263	junction_14	135.987361545108	660	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGAGCCGCCTTCCCGAC	NA	False	NA	NA	False	NA	NA	NA	115410452	115379834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398375_115410315
37200	chr10	+	3722	16	ISM	ENSMUSG00000069601.15	ENSMUST00000182029.8	3825	19	39	15075	25	1027	5prime_fragment	FALSE	canonical	3	68	junction_4	11.2853887837327	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGTGGCATTTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	69761673	69836560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184
37201	chr13	+	1792	4	NNC	ENSMUSG00000113081.2	novel	452	3	NA	NA	20	557	at_least_one_novel_splicesite	FALSE	canonical	3	125	junction_3	193.294823750893	250	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGGTAAAAGGCTTAA	NA	False	NA	NA	False	NA	NA	NA	62411399	62423624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62411510_62420579_62420707_62420906_62420968_62422130
37202	chr2	-	3689	2	FSM	ENSMUSG00000074825.5	ENSMUST00000110386.2	1898	2	-160	-1631	-24	-6	multi-exon	FALSE	canonical	3	11	junction_1	0	64	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCTGTATGAACTGGAAT	NA	False	NA	NA	False	NA	NA	NA	126985386	126980697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126984135_126985134
37203	chr17	-	4028	34	FSM	ENSMUSG00000024242.16	ENSMUST00000025089.9	4220	34	192	0	123	0	multi-exon	TRUE	canonical	3	139	junction_19	37.8671982269756	125	19	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTGCGTAGTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	81035330	80887945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981_80905154_80909621_80909726_80911411_80911471_80913195_80913314_80913388_80913450_80917180_80917261_80919459_80919545_80920896_80920939_80921343_80921457_80922445_80922606_80923914_80923958_80925722_80925777_80925985_80926025_80931484_80931544_80936714_80936778_80937843_80937903_80944148_80944228_80951560_80951672_80951755_80951838_80951920_80951984_80952142_80952275_80956955_80957029_80958513_80958557_80961290_80961339_80961840_80961897_80963285_80963351_80971420_80971512_80988296_80988355_81035222
37205	chrX	-	2086	8	NNC	ENSMUSG00000085396.8	novel	3850	12	NA	NA	-8255	-1314	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	53.4560662638784	1	79	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAAGCAGGGAGGATGA	NA	False	NA	NA	False	NA	NA	NA	49667331	49653315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49655398_49655669_49656416_49656571_49658411_49658549_49659014_49659169_49661891_49662022_49662100_49662229_49666747
37206	chr8	+	2139	7	NNC	ENSMUSG00000031467.11	novel	10779	8	NA	NA	258	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	259.797143085823	16	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAATTTGCTTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	18896552	18933432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928124_18932003
37207	chr11	+	2739	2	Genic_Genomic	ENSMUSG00000044068.8	novel	4492	1	NA	NA	32	394	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATATTGTCTGAATCTGT	NA	False	NA	NA	False	NA	NA	NA	22922036	22924908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_22922420_22922552
37208	chr6	-	2117	6	NIC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	-56	-4	intron_retention	FALSE	canonical	3	6	junction_2	96.092871743954	285	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACATTGTGTCTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	120508336	120486458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120487781_120491358_120491534_120495404_120495499_120498154_120498268_120500366_120500571_120508127
37209	chr4	+	3947	12	NNC	ENSMUSG00000029009.18	novel	2104	6	NA	NA	16	388	intron_retention	FALSE	non_canonical	0	0	junction_11	35.3915524309273	17	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGAGGTCCTTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	148123631	148141051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148123867_148126040_148126287_148127881_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140077_148140128
37210	chr12	-	3358	12	NNC	ENSMUSG00000021238.12	novel	3399	12	NA	NA	18	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	69.611080147767	3	97	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGTACTGAAAAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	84497759	84477506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487084_84488536_84488699_84488844_84488920_84490502_84490563_84497665
37211	chr8	+	2489	14	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	58	-24	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	141.938981806314	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATGATAAATCTGAGTAC	2451	False	NA	NA	False	NA	NA	NA	70495756	70524973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70495857_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
37212	chr5	-	1753	14	NNC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-1	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	254.875581667169	1	23	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGGTTTTTTAGTGTGG	8909	False	NA	NA	False	NA	NA	NA	110801215	110796452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798438_110798984_110799078_110799177_110799287_110799533_110799653_110800178_110800286_110800876_110800998_110801088
37214	chr15	-	1953	14	NNC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	28	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	169.977826608242	21	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTTGACCCTGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	76361449	76337196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76337579_76337662_76337771_76337843_76337911_76338665_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
37215	chr8	+	2528	11	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	3	-14	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_6	473.730313575139	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGGCATTTTAAACAA	3016	False	NA	NA	False	NA	NA	NA	13389663	13428428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13415088_13415196_13419458_13419581_13420171_13420275_13420480_13420647_13420878_13421079_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
37217	chrX	+	3053	23	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-12853	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	123.385206126622	1	112	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTCTTCAGTTATTTT	7966	False	NA	NA	False	NA	NA	NA	159932892	160039898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933142_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992199_159992266_159992604_159992680_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
37218	chr12	+	1372	8	NNC	ENSMUSG00000021134.18	novel	1491	8	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	671.152922140669	32	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992309	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992362_80993383_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
37220	chr10	-	1166	8	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-7	-869	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	726.966186789106	2	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTCGTCAAGCCCCTCT	8738	False	NA	NA	False	NA	NA	NA	128401810	128394505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396538_128399445_128399575_128401608
37221	chr8	+	3760	7	NNC	ENSMUSG00000071113.5	novel	1836	3	NA	NA	-252	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2.7938424357067	42	34	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAAAGTTTCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	34581931	34592327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_34581994_34582140_34582367_34582671_34582790_34584690_34585592_34585956_34586766_34587223_34587449_34590908
37224	chr11	-	2653	18	FSM	ENSMUSG00000018160.16	ENSMUST00000092735.12	2627	18	-26	0	7	0	multi-exon	FALSE	canonical	3	35	junction_1	53.6447367918524	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCTGTGTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	98084112	98042979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_98043790_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
37226	chr8	-	1947	19	Antisense	novelGene_ENSMUSG00000004626.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	339	10	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGCTGCTTCCGGGTCGGT	1390	False	NA	NA	False	NA	NA	NA	3692785	3681152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3681277_3682217_3682268_3682497_3682596_3683288_3683366_3683845_3683927_3684019_3684122_3684472_3684624_3685445_3685529_3685613_3685744_3685828_3685940_3686180_3686237_3686350_3686420_3686491_3686581_3687118_3687254_3689506_3689617_3691109_3691205_3691732_3691818_3691894_3692054_3692643
37227	chr6	+	3032	1	ISM	ENSMUSG00000029638.18	ENSMUST00000064285.15	6200	8	84900	17	14795	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	13	62	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAGTAAAACTGGAATAG	216	False	NA	NA	False	NA	NA	NA	8594499	8597531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_8594500_8597500
37228	chr11	+	1872	3	NIC	ENSMUSG00000048277.16	novel	1520	4	NA	NA	-9	-6	intron_retention	FALSE	canonical	3	588	junction_1	17	1511	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCAGCGTGTTGTGCTGGG	NA	False	NA	NA	False	NA	NA	NA	117700484	117705103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_117700630_117703284_117704012_117704103
37229	chr8	-	4531	2	ISM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	9367	31	9009	-31	3prime_fragment	FALSE	canonical	3	1204	junction_1	0	14	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAATAAAACATTCAACTG	NA	False	NA	NA	False	NA	NA	NA	121385493	121380683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_121384988_121385266
37230	chr6	-	1403	6	NNC	ENSMUSG00000067702.6	novel	1509	5	NA	NA	-4	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	266.448794330168	1	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAATTTCTAGACTGAG	3457	False	NA	NA	False	NA	NA	NA	125263009	125255254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125255618_125257932_125258244_125258335_125258614_125259315_125259465_125259718_125259942_125262930
37232	chr9	-	4544	8	ISM	ENSMUSG00000032402.13	ENSMUST00000034973.10	5090	9	90094	1	-1353	-1	3prime_fragment	FALSE	canonical	3	17	junction_3	5.49582401762038	66	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCCCTGCTGCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	63575182	63554049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_63557668_63559762_63559908_63561967_63562106_63562832_63563046_63570946_63570998_63573429_63573505_63574756_63574889_63575010
37233	chr2	-	1744	14	NNC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	-1	108	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_7	127.896315254277	827	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGCATGGTCCATAAAATG	NA	False	NA	NA	False	NA	NA	NA	48839254	48795219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819596_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
37234	chrX	+	1315	9	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	40	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1137.62735550794	24	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52077053	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52080618_52080679_52087967_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
37236	chr2	+	1742	14	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	0	-435	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	258.285906443723	25	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCTCTTCTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	164675766	164681504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164675913_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
37237	chr13	-	4212	11	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	16	-2	intron_retention	FALSE	canonical	3	27	junction_4	30.0348131340949	25	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTCTGGTTCACTCTTT	NA	False	NA	NA	False	NA	NA	NA	74210402	74185753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
37238	chr8	+	3520	12	NNC	ENSMUSG00000005698.16	novel	3782	12	NA	NA	6505	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	136.335451632731	4	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATAACGGATTAACAGGC	NA	False	NA	NA	False	NA	NA	NA	106370202	106409533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406705_106406892_106408066_106409146_106409186
37239	chr6	-	2528	12	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	0	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	79.9579434907672	5	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGCATTTGTCATAAAAT	NA	False	NA	NA	False	NA	NA	NA	112673631	112596867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112597866_112621548_112621712_112626534_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
37240	chr8	+	1864	12	NIC	ENSMUSG00000003808.19	novel	1826	13	NA	NA	0	-7	intron_retention	FALSE	canonical	3	551	junction_8	58.5182037086688	750	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGGACTCTGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	85583648	85595878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
37241	chr2	-	2537	24	NNC	ENSMUSG00000035000.9	novel	1012	8	NA	NA	-41	-7200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	75.7429490376662	10	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGAGCCTGTGCTTTTG	NA	False	NA	NA	False	NA	NA	NA	62242244	62172016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62172477_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195403_62203159_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
37242	chr14	+	1875	11	NNC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	16	2	intron_retention	FALSE	non_canonical	0	0	junction_3	654.041474220099	3	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGTTATGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73790221	73833584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_73790338_73806073_73806174_73806301_73806356_73806413_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
37243	chr2	+	3638	4	Antisense	novelGene_ENSMUSG00000023224.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	60	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCACCCCATTCCCGGGCC	NA	False	NA	NA	False	NA	NA	NA	84597778	84605209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_84600641_84601768_84601903_84603473_84603991_84605084
37244	chr2	-	2178	15	FSM	ENSMUSG00000027487.12	ENSMUST00000109731.8	2160	15	-22	4	-22	2	multi-exon	FALSE	canonical	2	7	junction_14	23.0212856251934	409	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTCCTTGTCTACTTTT	5367	False	NA	NA	False	NA	NA	NA	154214952	154177303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600_154214775_154214881
37245	chr8	+	1930	4	NNC	ENSMUSG00000087153.9	novel	862	5	NA	NA	-179	9543	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9.89949493661167	8	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	2718	False	NA	NA	False	NA	NA	NA	19732285	19757295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_19732505_19737619_19737864_19755608_19756785_19757004
37246	chr7	-	1653	13	NNC	ENSMUSG00000030491.17	novel	1620	12	NA	NA	7	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	180.072824774373	311	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACATTGCAGAATTCTTGC	NA	False	NA	NA	False	NA	NA	NA	35237111	35193057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35228796_35228910_35236938
37247	chr15	-	2776	15	NNC	ENSMUSG00000023055.11	novel	2824	15	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	31.0522929581566	15	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCATGACGTATGTT	NA	False	NA	NA	False	NA	NA	NA	102630528	102615211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619311_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
37248	chr8	+	3676	4	FSM	ENSMUSG00000031907.10	ENSMUST00000034382.8	2632	4	3	-1047	3	338	multi-exon	FALSE	canonical	2	13	junction_1	5.09901951359278	39	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAAATGTGATGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	107141973	107153568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107142403_107145702_107145830_107146146_107146243_107150544
37249	chr1	-	1364	11	Antisense	novelGene_ENSMUSG00000006304.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1177	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCGCCGCCGCCTTACT	NA	False	NA	NA	False	NA	NA	NA	74307368	74275729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_74275762_74275969_74276057_74285236_74285272_74287288_74287402_74290410_74290456_74293983_74294174_74295116_74295209_74301615_74301740_74302896_74302998_74303506_74303613_74306929
37251	chr1	+	2013	12	Antisense	novelGene_ENSMUSG00000064823.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCGCGAGCCTTAACGCG	NA	False	NA	NA	False	NA	NA	NA	86278219	86287191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86278334_86279950_86280045_86280238_86280354_86280845_86281002_86281452_86281579_86282744_86282866_86283772_86283920_86284102_86284180_86284277_86284464_86284678_86285173_86285826_86285945_86286926
37253	chr10	-	2335	7	FSM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	160	69	0	-69	multi-exon	FALSE	canonical	3	50	junction_5	5.07991688470939	149	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTGTTTGTCTGATTTT	NA	False	NA	NA	False	NA	NA	NA	100425097	100408195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
37254	chr8	-	3001	8	NIC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-22	-14	intron_retention	FALSE	canonical	3	1341	junction_7	180.507787157479	32	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTTATGTCTCCCTT	NA	False	NA	NA	False	NA	NA	NA	95564915	95549202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_95549836_95550280_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
37257	chr6	-	2147	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	70	0	70	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	96	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9339	False	NA	NA	False	NA	NA	NA	128415570	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
37258	chr4	+	2592	16	NNC	ENSMUSG00000011257.20	novel	3019	15	NA	NA	-39	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.664130849758	740	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGTTTTATGTTACAAT	NA	False	NA	-66	True	NA	NA	NA	123176578	123192630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_123176843_123177399_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
37260	chr14	+	3230	16	NNC	ENSMUSG00000021901.11	novel	3855	16	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	100.044301298086	15	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGGTTGCTATCTCGA	NA	False	NA	NA	False	NA	NA	NA	30973452	30981887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978264_30979295_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
37261	chr15	-	2495	14	NNC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	175	0	intron_retention	FALSE	non_canonical	0	0	junction_11	85.6563935236553	3	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	89239602	89235345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238501_89238629_89238659_89238766_89238901_89238987_89239021_89239558
37262	chrX	+	2626	5	NNC	ENSMUSG00000031383.9	novel	2722	4	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	256.911828260203	470	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGAGGTTGTTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	72683012	72687120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72683248_72683798_72684114_72684221_72684411_72684952_72685409_72685689
37263	chr17	+	2758	2	FSM	ENSMUSG00000092417.4	ENSMUST00000052167.9	1295	2	-1455	-8	14	0	multi-exon	FALSE	canonical	3	88	junction_1	0	27	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4603	False	NA	NA	False	NA	NA	NA	35340472	35343790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35342636_35343195
37264	chr7	-	762	7	NNC	ENSMUSG00000042502.11	novel	2906	7	NA	NA	0	-190	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	271.217010282664	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCATTGATTTTGAGCTGT	5520	False	NA	NA	False	NA	NA	NA	126795110	126793019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126793103_126793186_126793294_126793374_126793526_126793913_126794074_126794194_126794331_126794532_126794634_126795086
37265	chr2	-	2509	8	NIC	ENSMUSG00000027361.16	novel	4153	9	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	2	20	junction_7	140.161568577561	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCATGCAGACTCATGTT	NA	False	NA	NA	False	NA	NA	NA	126517422	126470831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_126472303_126481148_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126517275
37266	chr5	-	1609	5	Antisense	novelGene_ENSMUSG00000039623.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCGGGGGTGAACAAGACA	NA	False	NA	NA	False	NA	NA	NA	142463559	142459662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_142459817_142460134_142460269_142460629_142460737_142461452_142461554_142462446
37267	chr17	+	2882	8	NIC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	-5	-15	intron_retention	FALSE	canonical	3	397	junction_1	39.3550038309058	8	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAGTAACATAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	79244582	79254587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79251374_79252369_79252514_79253724_79253899_79254303
37268	chr7	-	1720	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	-128	2	combination_of_known_junctions	FALSE	canonical	3	210	junction_7	116.504882966775	1376	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGCTGTCTTGCATTGT	NA	False	NA	NA	False	NA	NA	NA	4688195	4663517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687566_4687892
37269	chr12	+	1858	10	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_3	145.012983667321	115	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGCAGTGATGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	109506881	109538155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
37270	chr13	-	3588	9	FSM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	548	123	548	-123	multi-exon	FALSE	canonical	3	91	junction_5	9.45300878027732	1	81	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTTTGTATAATTTTA	NA	False	NA	NA	False	NA	NA	NA	94421789	94337940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94421727
37271	chr5	-	1853	2	ISM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	1112	9	1112	0	3prime_fragment	FALSE	canonical	3	557	junction_1	0	11	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGTATTTGGGGGGGG	9132	False	NA	NA	False	NA	NA	NA	114265125	114261995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_114262316_114263592
37272	chr9	-	1100	1	Antisense	novelGene_ENSMUSG00000032397.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGCACCCACATGGTGG	NA	False	NA	NA	False	NA	NA	NA	64197329	64196229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64196200_64197300
37273	chr9	-	637	1	Antisense	novelGene_ENSMUSG00000032397.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCCTCCAGGAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64196031	64195394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64195400_64196000
37275	chr7	-	2073	6	ISM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	-10	20	-4	-17	intron_retention	FALSE	canonical	3	447	junction_1	31.9899984370115	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCCCCAGACACCAAGCT	8624	False	NA	NA	False	NA	NA	NA	45480223	45474670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715
37276	chr7	-	4429	5	NNC	ENSMUSG00000044452.11	novel	6693	7	NA	NA	-803	149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	29.1890390386528	1	159	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAACCCCCTACCATTTC	NA	False	NA	NA	False	NA	NA	NA	35494272	35473002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35475753_35475862_35475998_35487142_35487247_35491072_35491188_35492947
37278	chr11	-	2684	11	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-26059	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	225.853691579305	1	101	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	NA	False	NA	NA	False	NA	NA	NA	113482664	113135679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196723_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113476290_113476328_113482607
37280	chr7	+	2186	2	NIC	ENSMUSG00000042289.12	novel	2286	5	NA	NA	549	-5	intron_retention	FALSE	canonical	3	93	junction_1	0	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTCCTTGTCTACCTTTT	2770	False	NA	NA	False	NA	NA	NA	127400661	127402969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127401286_127401407
37281	chr13	+	4496	13	NNC	ENSMUSG00000041817.15	novel	6013	13	NA	NA	317	-11	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	74.1676029903443	58	57	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGACTTAGAATGTCAGT	9034	False	NA	NA	False	NA	NA	NA	97208467	97266012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97208497_97228325_97228461_97230098_97230199_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199_97259401_97263003
37282	chr11	+	2871	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	29	0	29	0	multi-exon	FALSE	canonical	3	286	junction_14	47.8204313112466	235	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8211	False	NA	NA	False	NA	NA	NA	120358489	120374805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
37283	chr10	-	2464	10	NNC	ENSMUSG00000039480.15	novel	2727	12	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.5825018385477	7	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	NA	False	NA	NA	NA	34294518	34179604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_34180981_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
37284	chr4	-	2389	10	NNC	ENSMUSG00000028790.14	novel	3738	9	NA	NA	47	-1037	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	213.812020819489	494	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATGTGATGAATTGTCA	5028	False	NA	NA	False	NA	NA	NA	129636042	129608648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129609980_129612875_129612935_129613831_129613900_129614444_129614647_129616437_129616572_129619368_129619516_129621347_129621465_129623993_129624119_129635571_129635717_129635981
37286	chr14	+	2116	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	-20	5	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	776	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTAGTTTTTATACTTCT	8866	False	NA	NA	False	NA	NA	NA	122116011	122258451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
37287	chr4	-	2186	10	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	17	-30	intron_retention	FALSE	canonical	3	207	junction_9	455.91221810485	1	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATCTTAGTTTGCCATG	NA	False	NA	NA	False	NA	NA	NA	124830693	124812287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381_124830522_124830609
37289	chr7	-	3121	8	NNC	ENSMUSG00000011382.9	novel	5323	7	NA	NA	22	-1970	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.9095228575236	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCTTGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	45138207	45122380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45122630_45122839_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
37291	chr4	+	1614	14	NIC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	50	136	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	253.614533023931	9	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	NA	False	NA	NA	False	NA	NA	NA	155954121	155973326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155954178_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
37292	chr11	+	2071	16	FSM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	-3	0	3	0	multi-exon	FALSE	canonical	3	28	junction_5	25.2651714597168	571	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8657	False	NA	NA	False	NA	NA	NA	83363914	83397569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
37293	chr9	-	1844	12	NIC	ENSMUSG00000056131.14	novel	2666	13	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	141.503146593522	5	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTTTCGATTGCTTACC	NA	False	NA	NA	False	NA	NA	NA	86453878	86437053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
37294	chr4	-	1692	1	FSM	ENSMUSG00000065353.3	ENSMUST00000083419.3	205	1	-1107	-380	-1107	380	mono-exon	FALSE	NA	NA	NA	NA	NA	621	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTCTTTTCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	132080944	132079252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132079300_132080900
37295	chr13	-	1004	5	NNC	ENSMUSG00000021485.15	novel	1327	6	NA	NA	4085	3034	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGGGGACGTGGCTAGG	9713	False	NA	-107	True	NA	NA	NA	55473080	55469946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55470093_55470663_55470891_55472142_55472250_55472332_55472417_55472640
37297	chr5	+	1349	12	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1464	-5	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_10	474.994371432507	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCAGTGCTTCCAGAT	NA	False	NA	NA	False	NA	NA	NA	21991744	22008780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008172_22008363_22008461_22008544
37298	chr5	-	1222	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	469	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2031.74392087192	9	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTTACACAAACAGCTTG	4130	False	NA	NA	False	NA	NA	NA	142891107	142888884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142888945_142889117_142889256_142889409_142889697_142889821_142890004_142890098_142890538_142890991
37299	chr5	-	1915	14	NNC	ENSMUSG00000029703.11	novel	2473	15	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	100.918503648727	24	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGTGGGAAATGAGTGT	6733	False	NA	NA	False	NA	NA	NA	136164879	136151919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159131_136159884_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
37300	chr5	+	1408	9	NNC	ENSMUSG00000029131.15	novel	1018	9	NA	NA	-4	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	653.772597601796	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTGCAGCCTTCTTGTG	4591	False	NA	NA	False	NA	NA	NA	29940982	29972093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971470_29971613
37301	chr11	+	726	1	Genic_Genomic	ENSMUSG00000020458.17	novel	NA	NA	NA	NA	-3	-48442	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCAGGGGCTCGGGCTCA	NA	False	NA	NA	False	NA	NA	NA	29642943	29643669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_29642900_29643700
37302	chr19	+	4177	15	NNC	ENSMUSG00000025026.16	novel	4054	15	NA	NA	2	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.4561056949795	1	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTATTTTAAATATATGCA	2525	False	NA	NA	False	NA	NA	NA	53131228	53235502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53131482_53205229_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
37303	chr7	-	2368	10	NNC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	74.3481964877942	5	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAACACCTTGGCTAGA	NA	False	NA	NA	False	NA	NA	NA	112968548	112914835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927599_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
37304	chr18	+	3063	1	NIC	ENSMUSG00000024317.16	novel	2422	8	NA	NA	13738	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	114	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGATGTGCAGTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	21157518	21160581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_21157500_21160600
37306	chr12	-	1921	14	Antisense	novelGene_ENSMUSG00000113223.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCGAGACTCCGCCCCG	NA	False	NA	NA	False	NA	NA	NA	99885565	99850787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_99850810_99854101_99854212_99857435_99858004_99859875_99859919_99860966_99861020_99864517_99864654_99872294_99872387_99875936_99876106_99876541_99876619_99877851_99878039_99878532_99878582_99880308_99880377_99881708_99881815_99885324
37307	chr2	-	1604	3	FSM	ENSMUSG00000078923.11	ENSMUST00000060645.13	1586	3	-20	2	-5	-2	multi-exon	FALSE	canonical	3	27	junction_1	1070	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTCGGTGGTTTTATTTT	9421	False	NA	NA	False	NA	NA	NA	167473912	167449765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_167451168_167459748_167459898_167473859
37308	chr10	+	3019	4	NNC	ENSMUSG00000061371.8	novel	2360	4	NA	NA	0	1548	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	18.4028983224563	48	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAGACTCAAACTGTATG	NA	False	NA	NA	False	NA	NA	NA	81883956	81898968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81884064_81894203_81894331_81895350_81897671_81898503
37309	chrX	-	3164	20	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	14	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.9821249760769	6	46	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGGAACATTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	134985977	134972857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975512_134976073_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982182_134985845
37310	chr8	-	2714	3	FSM	ENSMUSG00000117748.2	ENSMUST00000176437.9	369	3	70	-2415	70	0	multi-exon	FALSE	canonical	3	66	junction_1	124	4	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGCTCCATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	107620153	107610521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107613159_107613932_107613989_107620132
37313	chr8	-	1626	2	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	2377	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43757596	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749655_43757525
37314	chr4	-	1893	11	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-52	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	326.309439029888	2	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATATAGCCCCATGCTGG	2561	False	NA	NA	False	NA	NA	NA	129229094	129203315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216063_129216424_129216663_129222380_129222527_129228289_129228438_129229010
37315	chr5	+	1752	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	1584.85758210495	1	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	759	False	NA	NA	False	NA	NA	NA	77099626	77115356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110286_77110336_77112410_77112470_77114093_77114253_77114494_77114788_77114891
37316	chr11	-	1581	2	FSM	ENSMUSG00000020460.16	ENSMUST00000147782.2	565	2	-1025	9	164	-9	multi-exon	FALSE	canonical	3	16484	junction_1	0	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCGTACTTAGTATTGT	NA	False	NA	NA	False	NA	NA	NA	29497696	29495854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29496030_29496290
37317	chr17	+	1375	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	905.190035296456	4	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTGAAAGCCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	29251645	29261079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29258814_29258884_29259748_29259788_29260180_29260268_29260357
37318	chr7	+	2712	14	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	42	9674	16	-351	intron_retention	FALSE	canonical	3	83	junction_7	5.82384407099929	13	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGTAAATTAATAAATAAAC	NA	False	NA	NA	False	NA	NA	NA	55443954	55467173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205
37320	chr1	+	2694	4	NNC	ENSMUSG00000052423.16	novel	1758	8	NA	NA	-4	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	97.3664327282366	3	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	NA	False	NA	NA	NA	171097904	171104466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171099572_171100090_171100327_171101522_171101657_171103809
37321	chr3	+	2791	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	-3	7	0	-7	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	1	130	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATGACAAAAATAAATGTT	NA	False	NA	NA	False	NA	NA	NA	96465272	96469166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
37323	chr14	-	1452	8	NIC	ENSMUSG00000060373.16	novel	1691	9	NA	NA	-10	4	intron_retention	FALSE	canonical	3	1620	junction_1	817.133566380749	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCTCCAAAATAATCTCT	8736	False	NA	NA	False	NA	NA	NA	52341474	52312251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
37324	chr2	+	2257	15	FSM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	23	-1	23	1	multi-exon	FALSE	canonical	3	502	junction_12	51.3083913254758	884	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATTTTACTCATTTCTTA	NA	False	NA	NA	False	NA	NA	NA	174257619	174269296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
37325	chr12	+	3156	10	NNC	ENSMUSG00000041712.8	novel	3261	11	NA	NA	35	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	265.448932569843	1	153	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTAAACCTATTCAAAAT	NA	False	NA	NA	False	NA	NA	NA	102724260	102743945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_102724438_102727629_102727751_102729677_102729813_102732066_102732121_102732504_102732615_102734346_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
37326	chr15	-	2462	16	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	281.540713456035	1	101	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81614082	81588812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593805_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597170_81600845_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
37327	chr3	+	3563	11	FSM	ENSMUSG00000028086.16	ENSMUST00000029727.8	2221	11	205	-1547	205	-5	multi-exon	FALSE	canonical	2	9	junction_1	26.0516794084374	64	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTATTGCGCCTGTTTCT	834	False	NA	NA	False	NA	NA	NA	84859657	84886499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_84859947_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
37328	chr5	-	2998	7	NIC	ENSMUSG00000029718.15	novel	1585	10	NA	NA	-20	0	intron_retention	FALSE	canonical	3	231	junction_6	131.361354878654	4	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGATCGTGTCTGAGGT	4082	False	NA	NA	False	NA	NA	NA	137609690	137603369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_137603580_137603718_137603890_137603984_137605370_137605669_137606342_137607152_137607412_137608658_137608768_137609498
37329	chr3	+	3334	8	Genic_Genomic	ENSMUSG00000086189.2	novel	4580	4	NA	NA	-7179	7499	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGCGTACCAGAGTGCA	704	False	NA	NA	False	NA	NA	NA	30733054	30754014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_30735263_30739007_30739176_30741563_30741732_30743287_30743454_30743996_30744170_30745309_30745453_30749638_30749780_30753847
37330	chr11	-	2862	2	Intergenic	novelGene_2416	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	104	junction_1	0	228	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAGATTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	79867140	79863325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_79865963_79866915
37331	chr8	+	2009	17	NNC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	21	junction_6	176.304955971181	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	NA	False	NA	NA	NA	85415903	85426415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422080_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
37334	chr9	+	1165	6	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	19546	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	438.933434588891	2	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTAGTGACTCTGAGTG	1865	False	NA	NA	False	NA	NA	NA	45301285	45307446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45301346_45301934_45301975_45302074_45302150_45302858_45302877_45306280_45306640_45306833
37335	chr6	-	1542	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	0	8	0	-1	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	3509	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCATTTTCTGACTAA	NA	False	NA	NA	False	NA	NA	NA	33037195	32769159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
37336	chr4	-	2157	14	Antisense	novelGene_ENSMUSG00000028672.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTCCTACATCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	135687559	135648086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_135648462_135650277_135650411_135652857_135652995_135657206_135657314_135660207_135660409_135661998_135662199_135664237_135664332_135666382_135666512_135677855_135677943_135679679_135679785_135681162_135681263_135682896_135683045_135686031_135686093_135687279
37337	chr9	+	1378	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6158.95862610106	5	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084607_64084760_64085002_64085087_64085178_64085300_64085504
37338	chrX	+	1299	8	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1062.95435423337	13	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	False	NA	NA	False	NA	NA	NA	52076977	52110536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087998_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
37339	chr15	-	2963	7	NNC	ENSMUSG00000063354.8	novel	2063	11	NA	NA	21	0	intron_retention	FALSE	canonical	0	0	junction_1	155.875662700186	1	131	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8687	False	NA	NA	False	NA	NA	NA	76501027	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76496864_76496962_76497143_76497403_76497557_76497656_76498430_76498686_76499114_76499243_76499440_76500074
37340	chr7	+	3949	7	NNC	ENSMUSG00000015165.17	novel	1850	13	NA	NA	395	1	intron_retention	FALSE	non_canonical	0	0	junction_1	2161.2675807395	13	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTATTTGCTGGGGCTC	NA	False	NA	NA	False	NA	NA	NA	28514925	28521670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28517915_28518265_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
37341	chr6	+	4487	1	NIC	ENSMUSG00000001517.15	novel	4652	8	NA	NA	441	-260	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	69	63	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGTACACAGCCTGGAGG	NA	False	NA	NA	False	NA	NA	NA	128348362	128352849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_128348400_128352800
37342	chr2	-	700	1	ISM	ENSMUSG00000056486.19	ENSMUST00000112024.10	4050	13	163930	57	14253	28	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCATTTGACATGTTCC	NA	False	NA	NA	False	NA	NA	NA	73441760	73441060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_73441100_73441800
37343	chr16	-	2738	3	NNC	ENSMUSG00000022505.10	novel	3440	5	NA	NA	28390	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.5	1	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAATTATTTTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	10103345	10099648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10101806_10101925_10102480_10103318
37344	chr10	-	1484	12	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	26	-880	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	792.378728630935	3	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCAAAATCCACCGTCGT	8771	False	NA	NA	False	NA	NA	NA	128401777	128394516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398780_128398930_128399005_128399092_128399238_128399519_128399575_128401608
37345	chr10	+	1577	12	NIC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	-2	5	intron_retention	FALSE	canonical	2	393	junction_6	93.7160296580902	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGAAGTTTGTAAAATGT	1006	False	NA	NA	False	NA	NA	NA	127851062	127865857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127851221_127851832_127851991_127853844_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
37346	chr1	+	1716	10	NIC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	2	9	junction_4	161.054932734222	1527	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTCAAGGAATCATTGT	8185	False	NA	NA	False	NA	NA	NA	134333732	134339465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334598_134334705_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
37348	chr15	-	1924	12	NNC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	-3	-153	intron_retention	FALSE	non_canonical	0	0	junction_4	247.873901559604	19	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGCTCCAAGTGGCGCCT	NA	False	NA	NA	False	NA	NA	NA	99149801	99141240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99141649_99141805_99141889_99142025_99142119_99142228_99142595_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
37349	chr7	-	1971	6	FSM	ENSMUSG00000030591.18	ENSMUST00000209034.2	1983	6	-51	63	20	-63	multi-exon	FALSE	canonical	3	1581	junction_4	157.590101211973	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAACTGACTTTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	28879957	28873675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
37350	chr7	+	2352	10	NIC	ENSMUSG00000030763.8	novel	1369	11	NA	NA	-8	-4	intron_retention	FALSE	canonical	0	0	junction_5	92.2352065825915	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTCAGACTCTGCTAC	6890	False	NA	NA	False	NA	NA	NA	122977270	123029563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003708_123009946_123010050_123017440_123017562_123020760_123022022_123027316_123027415_123029355
37351	chr9	+	1949	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	37	1	37	-1	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	131	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTCTGATTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	65537877	65567807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
37353	chr17	-	151	2	Intergenic	novelGene_151	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCACAGGGAATGTTTGA	NA	False	NA	NA	False	NA	NA	NA	35387904	35335793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35335931_35387890
37355	chr2	+	2284	14	NNC	ENSMUSG00000000194.14	novel	6134	18	NA	NA	-29	-1632	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	129.118815976035	13	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTTGGTCATGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	31042298	31080493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078821_31079535
37356	chr8	-	3387	3	FSM	ENSMUSG00000038069.7	ENSMUST00000212175.2	3393	3	2	4	2	-4	multi-exon	FALSE	canonical	3	65	junction_1	31	103	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATCTTATTAGATGATTG	NA	False	NA	NA	False	NA	NA	NA	48166964	48162483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_48165330_48165922_48166054_48166554
37358	chr8	+	2218	5	NNC	ENSMUSG00000052446.18	novel	781	5	NA	NA	13	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	174.168560595763	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTCCAGTTTGTAGAG	NA	False	NA	NA	False	NA	NA	NA	72704894	72724171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742_72722393_72722901
37359	chr6	-	5222	9	NNC	ENSMUSG00000036667.15	novel	5257	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	3.903123748999	27	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGAGGCTTCACATTCA	6082	False	NA	NA	False	NA	NA	NA	42687013	42644935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_42647258_42650312_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42686892
37362	chr10	-	1044	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	364	75	364	-75	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGTCTGTTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	90959453	90952744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
37363	chr2	+	2316	9	NNC	ENSMUSG00000026864.14	novel	2613	8	NA	NA	128	-86	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1134.54977303775	1	105	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTATTTACACTGGTCT	NA	False	NA	NA	False	NA	NA	NA	34662238	34666457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662291_34662365_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665242_34665562
37365	chr7	+	2579	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	-32	15	-32	-15	multi-exon	FALSE	canonical	3	128	junction_2	8.2192186706253	247	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAACTCTCAAAATGTTT	7110	False	NA	NA	False	NA	NA	NA	128125307	128148690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
37368	chr10	-	1286	9	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1546.15409969382	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959868	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952859_90952914_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
37369	chrX	-	2832	4	Antisense	novelGene_ENSMUSG00000046774.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTCCTTAAGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	100842244	100838218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100839695_100840283_100840443_100840964_100841990_100842072
37370	chr18	+	2248	18	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-23	-4752	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	266.230537245331	1	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTAGTGTTCTTGA	9027	False	NA	NA	False	NA	NA	NA	32970340	32994701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978703_32979889_32980016_32980194_32980371_32980641_32980819_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994171_32994547
37371	chrX	+	4021	16	FSM	ENSMUSG00000000838.18	ENSMUST00000114657.9	4076	16	-13	68	-4	-68	multi-exon	FALSE	canonical	3	289	junction_11	161.476190195335	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAGATTGTTTATCTTA	NA	False	NA	NA	False	NA	NA	NA	67722403	67761501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
37372	chr9	+	2812	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	22	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	273.680396052902	3	149	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTAGGTTCATATTATT	5534	False	NA	NA	False	NA	NA	NA	35122472	35128309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127614
37373	chr14	-	2876	10	NNC	ENSMUSG00000022180.8	novel	4084	11	NA	NA	27183	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.80656320908194	30	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGGAGATGGAGTGATG	2345	False	NA	NA	False	NA	NA	NA	54992204	54959679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54960093_54960249_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54992133
37374	chr11	+	1564	10	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	13	138	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	900.375408673077	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTTTCCCACTCTCT	NA	False	NA	NA	False	NA	NA	NA	107370322	107388697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385691_107388356
37375	chr6	+	3712	13	NIC	ENSMUSG00000030347.7	novel	2501	14	NA	NA	0	34	intron_retention	FALSE	canonical	3	74	junction_9	14.147045235274	5	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGTATACCAGACAAATG	NA	False	NA	NA	False	NA	NA	NA	126916937	126952611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_126916990_126919274_126919470_126921754_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
37377	chr8	+	2288	11	NNC	ENSMUSG00000038482.12	novel	1700	11	NA	NA	-8127	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	314.777635800258	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTAAACAAGCTCTGTGT	1923	False	NA	NA	False	NA	NA	NA	13407042	13428437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141_13428047_13428127
37378	chr13	-	2985	16	NNC	ENSMUSG00000042167.7	novel	2990	15	NA	NA	-9	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	130.15477965356	255	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTATATCTGGACATTG	NA	False	NA	NA	False	NA	NA	NA	93328902	93282804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601_93328641_93328742
37379	chr13	-	1792	1	Intergenic	novelGene_1493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCCCGTAAAAGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	86192473	86190681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_86190700_86192500
37380	chr9	+	3672	14	NNC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	53	-1	intron_retention	FALSE	non_canonical	0	0	junction_11	15.4314671212686	60	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGGTGTAGAAGTTT	1689	False	NA	NA	False	NA	NA	NA	59587479	59626156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621557_59623205_59623311_59623490_59625225_59625281_59625422_59625505_59625744_59625803
37381	chr6	+	3945	18	NIC	ENSMUSG00000042810.15	novel	4000	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	18.3299252363328	81	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGGCCATTGGCTTC	NA	False	NA	NA	False	NA	NA	NA	48372565	48393833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_48372822_48379817_48379945_48380356_48380432_48380924_48381075_48382167_48382324_48383230_48383366_48383767_48383942_48384606_48384757_48385462_48385661_48386103_48386278_48386651_48386829_48388575_48388729_48389207_48389361_48390011_48390207_48390296_48390438_48390989_48391086_48391423_48391535_48392509
37382	chr16	+	1381	7	NNC	ENSMUSG00000022849.6	novel	1703	8	NA	NA	22528	-103	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	215.038304081441	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATATGATATACGTGTAT	923	False	NA	NA	False	NA	NA	NA	35613304	35645815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_35613437_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
37383	chr1	-	2102	12	NNC	ENSMUSG00000026301.17	novel	2060	12	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	23.8985458944215	503	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTGACTCAGTAATTT	NA	False	NA	NA	False	NA	NA	NA	90017867	89969862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017320_90017653
37384	chr9	-	2463	19	NIC	ENSMUSG00000032498.10	novel	2754	19	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	91.190277259512	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGATTTTTTTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	111100607	111057323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_111057695_111058907_111059022_111059310_111059366_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
37386	chr18	-	1888	7	NIC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	740	-6	intron_retention	FALSE	canonical	3	1190	junction_5	89.2499610955409	314	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCATTTCTTGTTATC	NA	False	NA	NA	False	NA	NA	NA	77854740	77845274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77849817_77851772_77851909_77854563
37387	chr11	+	2796	6	Antisense	novelGene_ENSMUSG00000049321.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTCCCACAAGACCATG	NA	False	NA	NA	False	NA	NA	NA	50789866	50806996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_50792118_50796911_50796993_50801266_50801352_50801531_50801703_50803105_50803252_50806934
37389	chr15	-	1021	1	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	2114	6	1987	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTTTGTTTCTGGATA	2145	False	NA	NA	False	NA	NA	NA	98830332	98829311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98829300_98830300
37390	chr11	-	1872	13	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	-9	0	intron_retention	FALSE	canonical	3	831	junction_12	108.139923504484	2	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	96807227	96798641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
37391	chr3	+	734	1	Antisense	novelGene_ENSMUSG00000047676.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACGCTGACATCAGCAGG	NA	False	NA	NA	False	NA	NA	NA	149778215	149778949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_149778200_149778900
37392	chr5	-	3466	21	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	130	1918	at_least_one_novel_splicesite	FALSE	non_canonical	3	600	junction_14	73.16930708979	2	68	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAATTATGGCTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	27996251	27947164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_27947498_27949108_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996196
37393	chrX	+	3306	5	NIC	ENSMUSG00000031154.16	novel	4259	9	NA	NA	11939	-8	intron_retention	FALSE	canonical	3	377	junction_4	60.6480626236321	232	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGCTTACTTATCTTGT	4020	False	NA	NA	False	NA	NA	NA	7733904	7742851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
37394	chr5	-	1661	13	FSM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	348	16	57	-5	multi-exon	FALSE	canonical	3	556	junction_3	56.1372326436643	1001	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCTACTCCCATGACTCT	NA	False	NA	NA	False	NA	NA	NA	31350426	31344917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
37395	chr8	+	2655	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	244	-8	-12	0	multi-exon	FALSE	canonical	3	129	junction_5	26.6578318698277	283	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	4005	False	NA	NA	False	NA	NA	NA	105897564	105944621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
37396	chr5	+	1468	1	Intergenic	novelGene_684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	544	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGCGTGCGTG	NA	False	NA	NA	False	NA	NA	NA	31777631	31779099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_31777600_31779100
37397	chr5	+	802	1	NIC	ENSMUSG00000106918.4	novel	367	2	NA	NA	7687	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTCTTGTCTCTTAGAG	NA	False	NA	NA	False	NA	NA	NA	31779182	31779984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31779200_31780000
37399	chr11	+	1876	3	NNC	ENSMUSG00000000581.9	novel	625	4	NA	NA	0	-996	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	370	28	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGTTCTATTTTATTA	7329	False	NA	NA	False	NA	NA	NA	17207591	17218180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_17207659_17212647_17212795_17216518
37400	chr8	+	2281	14	NNC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-8	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	70.7307587735802	12	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTCAGTGTTGTTGCAC	NA	False	NA	NA	False	NA	NA	NA	122677305	122752919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122723966_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
37401	chr8	+	1893	10	NIC	ENSMUSG00000019139.11	novel	1836	11	NA	NA	14	-4	intron_retention	FALSE	canonical	3	300	junction_1	50.7888390578039	149	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAAGCCTCCTTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	71047153	71049934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049562_71049646
37402	chr10	-	2039	10	NNC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-1402	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	140.73221221723	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGAGCCTCCAGGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	81329291	81322293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81327771_81327892_81328661_81328757_81328896_81329042_81329182
37403	chr11	+	3285	22	NNC	ENSMUSG00000017119.21	novel	4654	24	NA	NA	4	20	intron_retention	FALSE	non_canonical	0	0	junction_5	73.8827900574056	1	146	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCATTGAGTGTGGGTG	982	False	NA	NA	False	NA	NA	NA	101443687	101471634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101455424_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468858_101471410
37405	chr5	-	1599	10	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	5418	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	643.613774990891	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTCCTTCCTGGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	24777047	24770346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773740_24773842_24774068_24774165_24776141_24776245_24777000
37406	chr14	+	2308	9	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	314	4	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_4	273.383430368411	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATAGTTTTGTTGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	62585061	62610445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_62586078_62587848_62587926_62590971_62591087_62597911_62598063_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
37407	chr3	+	2961	13	NIC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	12	5	intron_retention	FALSE	canonical	3	8	junction_2	270.983740287125	1	96	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	69629376	69656380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_69629456_69629741_69629800_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69654169_69655630_69655702_69656104
37408	chr18	+	2464	12	NIC	ENSMUSG00000024442.7	novel	2394	13	NA	NA	4	-9	intron_retention	FALSE	canonical	3	315	junction_6	28.9099485293029	2	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATCTCTCGGTCTTGCCC	3971	False	NA	NA	False	NA	NA	NA	38383315	38395673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391416_38392949_38393110_38394116_38394339_38394932
37409	chr12	-	2454	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	-40	8	-8	-8	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	176	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGTATCAACACTTGC	NA	False	NA	NA	False	NA	NA	NA	111780315	111769634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
37410	chr4	-	3255	5	ISM	ENSMUSG00000028413.14	ENSMUST00000030121.13	3983	6	30444	0	30444	0	3prime_fragment	FALSE	canonical	3	127	junction_2	16.6883192682786	153	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTCTTTTCTTTTTTG	168	False	NA	NA	False	NA	NA	NA	40823561	40804601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_40807318_40807732_40807838_40809678_40809802_40812684_40812873_40823438
37411	chr6	+	1852	12	FSM	ENSMUSG00000042389.14	ENSMUST00000040234.9	2106	12	-5	259	-5	-259	multi-exon	FALSE	canonical	3	175	junction_1	38.6343314973604	572	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAACATGACATCATTGC	NA	False	NA	NA	False	NA	NA	NA	115521619	115555330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
37412	chr5	-	2329	15	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	-34	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	879.355402251779	1	133	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCCTCTTGCTTGTT	2286	False	NA	-123	True	NA	NA	NA	138170114	138162870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164310_138164925_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138168006_138168600_138168653_138170003
37413	chr3	+	1888	14	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	63	-5826	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	437.988152010731	2	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	NA	False	NA	NA	NA	63883589	63924174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883725_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63900572_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
37414	chr11	+	1091	5	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATTTTAAGAGGCTTCG	6761	False	NA	NA	False	NA	NA	NA	69807545	69810135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69808164_69808250_69808331_69808425_69808555_69808742_69808850_69809978
37415	chr9	+	2314	19	NIC	ENSMUSG00000038379.16	novel	2711	21	NA	NA	-14	-14	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	63.5917971649384	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAATTAACTTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	83716756	83751532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_83716813_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
37416	chr6	-	1828	8	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	336.054295904573	2	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCCTCACAGTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	95695784	95451126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95563920_95564011_95572698_95572735_95632438_95632581_95695669
37417	chrX	+	3593	20	NIC	ENSMUSG00000079487.12	novel	6816	45	NA	NA	68	90	intron_retention	FALSE	canonical	3	86	junction_13	11.2734827246234	4	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCTTCTCCCAAGGTC	NA	False	NA	NA	False	NA	NA	NA	100317703	100327624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273
37418	chr4	+	2584	10	NNC	ENSMUSG00000028550.16	novel	3178	11	NA	NA	-5515	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	28.5038442284978	1	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACATAAGACACTTTTG	NA	False	NA	NA	False	NA	NA	NA	99100812	99148014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99100949_99104114_99104199_99106261_99106430_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
37419	chr5	+	876	1	FSM	ENSMUSG00000106926.2	ENSMUST00000200912.2	799	1	-4	-73	-4	73	mono-exon	FALSE	NA	NA	NA	NA	NA	21	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATTACATAGAATCTAC	NA	False	NA	NA	False	NA	NA	NA	82484693	82485569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_82484700_82485600
37420	chr13	+	1373	7	NNC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	425	-3369	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	528.781513376639	22	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTCCTCATCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	92491658	92522192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232_92521476_92521655
37422	chr18	-	2082	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	18	-15	18	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	1	98	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	NA	False	NA	NA	NA	38472011	38460587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
37423	chr16	-	3067	16	NNC	ENSMUSG00000022843.18	novel	2730	23	NA	NA	-156	-5	intron_retention	FALSE	canonical	0	0	junction_10	88.6851108635992	4	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTAATTAGCCACTCATG	NA	False	NA	NA	False	NA	NA	NA	20531294	20521742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20528700_20529021_20529169_20529304_20529390_20530483_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221
37425	chr13	+	1319	4	ISM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	185	4228	-16	388	5prime_fragment	FALSE	canonical	3	1314	junction_2	35.311313893551	21	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGACGGTGGCTTTGC	NA	False	NA	NA	False	NA	NA	NA	81931380	81941046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074
37426	chr13	+	1290	1	NIC	ENSMUSG00000021537.10	novel	1226	5	NA	NA	3884	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATGACAATAGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	81943979	81945269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_81944000_81945300
37428	chr5	-	4117	4	ISM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	9757	38198	9739	7600	internal_fragment	FALSE	canonical	3	94	junction_2	12.2565175405668	2	158	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCCCACAAAAGCACACAGA	NA	False	NA	NA	False	NA	NA	NA	33001843	32985361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_32988896_32989148_32989203_32992959_32993033_33001387
37429	chr5	-	1466	10	Antisense	novelGene_ENSMUSG00000029247.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGGCGGGAAAGGGAGGT	NA	False	NA	NA	False	NA	NA	NA	77115341	77099588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77099681_77104390_77104588_77107158_77107339_77108954_77109135_77109237_77109352_77110271_77110356_77112286_77112468_77114091_77114262_77114502_77114607_77115177
37431	chr1	+	3005	2	NNC	ENSMUSG00000045216.8	novel	3719	2	NA	NA	1385	158440	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCAACAAGGCCACACCT	NA	False	NA	NA	False	NA	NA	NA	36142155	36303967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_36144926_36303732
37432	chr6	+	2542	9	NNC	ENSMUSG00000029781.8	novel	3009	10	NA	NA	373	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	258.495527040605	23	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	NA	False	NA	NA	NA	56826690	56856343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_56826769_56827547_56827698_56828336_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
37434	chr7	-	1988	15	NNC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-26	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	171.296630773304	2	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGGTATGAGATGGTA	NA	False	NA	NA	False	NA	NA	NA	27252467	27231428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27231508_27231590_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237041_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
37435	chr10	+	2233	9	ISM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	226	2404	1	-1022	intron_retention	FALSE	canonical	3	966	junction_8	258.010658694559	12	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCTTTATTCTCTTCGG	1609	False	NA	NA	False	NA	NA	NA	79690486	79697862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657
37436	chr11	+	3365	8	NNC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_1	228.499988835797	4	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68936476	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68938020_68938381_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
37437	chr2	-	2630	14	NIC	ENSMUSG00000040434.17	novel	2445	15	NA	NA	-8	0	intron_retention	FALSE	canonical	3	78	junction_9	20.7327314612946	164	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	92201389	92195390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
37438	chr4	-	1374	9	Antisense	novelGene_ENSMUSG00000065452.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCCACCACCCACCGAG	NA	False	NA	NA	False	NA	NA	NA	40733050	40722568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40722633_40723701_40723843_40723970_40724149_40726102_40726208_40727953_40728182_40730170_40730286_40731681_40731798_40732073_40732182_40732731
37440	chr4	+	3626	1	Intergenic	novelGene_1935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	71	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTTAACACGATCAAACC	NA	False	NA	NA	False	NA	NA	NA	116955353	116958979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_116955400_116959000
37441	chr12	+	2050	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	2	0	2	0	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	355	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	NA	False	NA	NA	NA	98594417	98636074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
37442	chr15	-	1449	9	NNC	ENSMUSG00000018042.19	novel	1982	9	NA	NA	3970	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	536.279763160051	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCGACCCTGCCAGCGTT	2473	False	NA	NA	False	NA	NA	NA	83050408	83037702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038237_83038721_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275
37443	chr2	+	2424	14	NNC	ENSMUSG00000033068.17	novel	2540	14	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	43.7362996300035	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTTTTGCCTCATTAG	NA	False	NA	NA	False	NA	NA	NA	150591009	150613593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150591154_150594929_150595254_150597962_150598040_150600728_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
37444	chr11	+	1992	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	14	0	14	0	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	630	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2331	False	NA	NA	False	NA	NA	NA	69886616	69890835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
37445	chr9	-	2022	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4315	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	178	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	27033531	27008679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
37447	chr2	+	1580	6	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	-3	-75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1190.8276113695	1	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGTCTAATTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	34662103	34666468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662159_34662240_34662459_34662570_34662640_34664627_34664792_34665077_34665246_34665562
37448	chr7	-	1907	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	214	6	-5	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8898	False	NA	NA	False	NA	NA	NA	141941561	141929653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
37449	chr6	-	2058	10	NNC	ENSMUSG00000086429.10	novel	551	3	NA	NA	8906	21038	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	25	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGCAAGCACAGACCCTT	938	False	NA	NA	False	NA	NA	NA	113045232	113023350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_113023396_113024361_113024664_113026297_113026376_113032597_113033072_113036911_113037042_113040055_113040132_113042503_113042619_113043714_113043827_113044226_113044356_113044635
37452	chr11	+	1927	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	14	-859	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	297.73153398075	2	67	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGTGCTCAGGATGCTG	NA	False	NA	NA	False	NA	NA	NA	3914022	3929145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919509_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
37453	chr13	-	1952	3	Antisense	novelGene_ENSMUSG00000021474.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATAAAGACAGAGCCAC	NA	False	NA	NA	False	NA	NA	NA	54262354	54250748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_54250798_54258818_54258865_54260497
37455	chr2	-	5847	33	NIC	ENSMUSG00000040687.17	novel	5905	35	NA	NA	-1	-1	intron_retention	TRUE	canonical	0	0	junction_32	5.39531046372681	27	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTGGGCTCCTGTGCACT	NA	False	NA	NA	False	NA	NA	NA	91013385	90967706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_90968747_90969053_90969101_90970901_90970972_90973100_90973208_90973359_90973433_90973866_90974032_90977183_90977292_90982798_90982910_90984779_90984886_90984989_90985111_90985890_90985994_90988329_90988489_90988749_90988834_90989549_90989651_90992372_90992580_90992826_90992978_90993071_90993259_90993843_90993947_90995710_90995813_90996890_90997031_90997258_90997513_90997872_90998064_90998155_90998260_91000045_91000203_91000361_91000598_91000913_91001093_91003457_91003539_91005987_91006102_91006500_91006633_91007150_91007455_91008244_91008842_91009523_91009667_91013315
37456	chr2	-	1466	8	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-50	-1005	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4472.16761122134	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGTCCTTCAGTTTTCT	3686	False	NA	NA	False	NA	NA	NA	154734801	154714342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719826_154726230_154726367_154729623_154729728_154730102_154730281_154734609
37457	chr9	+	2472	5	ISM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	-26	1	-7	-1	intron_retention	FALSE	canonical	3	228	junction_1	61.0384100382702	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTGTTCTTGGTCATCA	NA	False	NA	NA	False	NA	NA	NA	99125487	99146980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878
37459	chr19	-	1991	5	Antisense	novelGene_ENSMUSG00000065087.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAGAAAGACA	9583	False	NA	NA	False	NA	NA	NA	8703800	8700940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8701554_8701766_8702084_8702375_8702618_8702845_8703465_8703600
37460	chr9	-	1566	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	30	9	30	4	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	1738	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTCTGAGACCTTTCTG	1438	False	NA	NA	False	NA	NA	NA	44255495	44247644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
37461	chr5	-	2024	3	NNC	ENSMUSG00000029427.12	novel	1868	3	NA	NA	-97	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	224	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACACATGAACCAAGACTT	NA	False	NA	NA	False	NA	NA	NA	123841578	123837836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123839220_123840625_123840744_123841055
37462	chrX	+	2046	7	FSM	ENSMUSG00000094378.8	ENSMUST00000101180.8	2029	7	-17	0	-17	0	multi-exon	FALSE	canonical	1	1	junction_6	4.6785562825394	620	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	148567451	148609690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_148567561_148582582_148582709_148583428_148583509_148587159_148588119_148601122_148601205_148602010_148602061_148609050
37463	chr9	-	1269	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6511.23180230387	12	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78386995_78387616_78387684_78387788_78387971_78388920
37464	chr1	+	2270	5	ISM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	24	3	-7	-3	intron_retention	FALSE	canonical	3	315	junction_1	77.3413699128739	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGCTGTGACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	37469243	37478062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457
37465	chr16	-	2855	10	NNC	ENSMUSG00000022704.17	novel	1457	9	NA	NA	2	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.9794199466591	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAAAAAAAACCCCGCTG	NA	False	NA	NA	False	NA	NA	NA	43710046	43681781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_43682359_43682565_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701330_43701577_43709929
37466	chr17	+	1642	6	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	-139	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1008.85610470473	2	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTGAAAGCCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	29255213	29261079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29255423_29257463_29257599_29258427_29258884_29259748_29259794_29260192_29260268_29260357
37467	chr15	+	2235	11	NNC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	26	2	intron_retention	FALSE	non_canonical	0	0	junction_1	87.4853702055378	29	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGGATCCTGGCCCGCT	4739	False	NA	NA	False	NA	NA	NA	76215456	76219100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76215513_76215605_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217574_76217663_76218091_76218213_76218405_76218489_76218661_76218781
37469	chr11	+	2373	18	NIC	ENSMUSG00000018372.14	novel	2696	20	NA	NA	20	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	16.1345982136393	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTGCTTTTGAATTTA	5151	False	NA	NA	False	NA	NA	NA	106680132	106709682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061_106697256_106700017_106700128_106700453_106700584_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
37470	chr8	+	2073	15	NNC	ENSMUSG00000001909.17	novel	2138	17	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_11	175.949044687746	1	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTTGTCATTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	85415885	85426414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424287_85424977_85425099_85425767_85425888_85425969_85426100_85426231
37471	chr15	+	2174	13	NIC	ENSMUSG00000022550.19	novel	2058	14	NA	NA	-9	0	intron_retention	FALSE	canonical	3	114	junction_9	19.2070227318609	1	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAATCGTTTTCTTTG	3114	False	NA	NA	False	NA	NA	NA	76460569	76480008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478648_76478728_76478811_76478873_76478953_76479046_76479467_76479536_76479654_76479738
37472	chrX	-	1227	6	Antisense	novelGene_ENSMUSG00000031221.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCTCCAGAAGTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	99559594	99538050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_99538160_99538507_99538803_99546598_99546795_99548793_99548876_99549545_99549657_99559160
37473	chr8	+	3584	11	FSM	ENSMUSG00000037656.10	ENSMUST00000067786.9	3566	11	-18	0	-18	0	multi-exon	FALSE	canonical	3	459	junction_6	45.0493063209635	163	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTTCTGACGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	22966785	23059628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_22966942_23025034_23025589_23028819_23028961_23030375_23030462_23035519_23035617_23048957_23049075_23050512_23050717_23050902_23051495_23054044_23054231_23055629_23055715_23058262
37475	chr17	-	1972	11	NNC	ENSMUSG00000097379.3	novel	2529	5	NA	NA	18033	15367	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAGACGCAAAGTTGCT	NA	False	NA	NA	False	NA	NA	NA	17614222	17594837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_17594932_17597979_17598120_17598744_17598859_17601070_17601248_17603545_17603635_17605139_17605336_17605840_17605938_17607326_17607834_17610227_17610327_17613716_17614121_17614167
37477	chr2	+	2892	20	FSM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	26	0	26	0	multi-exon	FALSE	canonical	3	126	junction_15	17.3977423950124	135	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	NA	False	NA	NA	NA	32126627	32145017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
37478	chrX	-	2029	11	NIC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	1	-35	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	433.790375642429	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCTTTGAAAAAAATGTTA	NA	False	NA	NA	False	NA	NA	NA	100128977	100122862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123199_100123305_100123415_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
37479	chr3	-	3436	4	FSM	ENSMUSG00000050144.14	ENSMUST00000193433.6	3429	4	-13	6	-9	-5	multi-exon	FALSE	canonical	0	0	junction_3	28.7672653471886	33	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTAAACTCTGGCTTTT	4084	False	NA	NA	False	NA	NA	NA	88332428	88317810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332152
37480	chr14	+	1915	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-20	1276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2294.59022942826	1	94	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGGGTGCACGGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	63359942	63380588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370904_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
37482	chr16	+	2511	7	NNC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	217.938064596344	1	81	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	17577526	17611246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602275_17607059_17607226_17610289
37483	chr13	+	4371	4	FSM	ENSMUSG00000045312.13	ENSMUST00000054274.8	4348	4	-22	-1	-22	1	multi-exon	FALSE	canonical	3	77	junction_1	5.35412613473634	81	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTCAAGTTTGTTGGCT	2204	False	NA	NA	False	NA	NA	NA	94194281	94331918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_94194415_94257284_94257344_94310530_94311147_94328355
37484	chr14	-	1780	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	5090	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	95.8524256344095	125	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTTTTTCTTTTTTCTTT	1962	False	NA	NA	False	NA	NA	NA	51040099	51026714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51027470_51029429_51029764_51031014_51031332_51036514_51036656_51039866
37485	chr13	-	1124	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	73	8136	13	8125	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	3	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTTTTTAAAAAAC	5919	False	NA	NA	False	NA	NA	NA	38178120	38163512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
37486	chr9	+	5378	1	NIC	ENSMUSG00000032086.13	novel	4041	8	NA	NA	2185	-30	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	23	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGCTTTTTCCCCATTTC	NA	False	NA	NA	False	NA	NA	NA	45768109	45773487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_45768100_45773500
37487	chr10	-	1585	7	NIC	ENSMUSG00000036112.16	novel	1984	11	NA	NA	0	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1012.56084865169	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGATCTGAGAGATACAT	NA	False	NA	NA	False	NA	NA	NA	93725646	93696798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_93697465_93698238_93698355_93698791_93698896_93705978_93706161_93707349_93707512_93722855_93722964_93725399
37489	chr3	-	2235	3	NNC	ENSMUSG00000027944.14	novel	837	2	NA	NA	-18	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	13.5	1	68	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGGTCTTAGTCTTGG	7249	False	NA	NA	False	NA	NA	NA	89905945	89902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903706_89904120_89905305_89905834
37490	chr17	+	2361	15	NNC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	19	-245	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_14	45.028562364031	5	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTGTAATTAAAATTCTT	NA	False	NA	NA	False	NA	NA	NA	64203035	64345338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64344940
37491	chr9	-	367	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	382	19	382	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	50255886	50255519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50255900
37492	chr14	+	2371	2	ISM	ENSMUSG00000075592.11	ENSMUST00000100529.10	6990	9	8919	8845	8919	2306	internal_fragment	FALSE	canonical	3	85	junction_1	0	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCTAATAGAAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	56100411	56102903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_56101069_56101189
37493	chr11	+	2456	3	FSM	ENSMUSG00000036275.14	ENSMUST00000109057.8	2472	3	16	0	16	0	multi-exon	FALSE	canonical	3	140	junction_1	2	222	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCTGTTAGTGTGTT	4574	False	NA	NA	False	NA	NA	NA	52287270	52299555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52287431_52293872_52294385_52297771
37494	chr16	-	3128	24	FSM	ENSMUSG00000022843.18	ENSMUST00000007207.15	3128	24	-8	8	-8	-8	multi-exon	FALSE	canonical	3	159	junction_10	37.9003269459341	127	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAACACTTGTGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	20534875	20521721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
37495	chrX	+	1950	2	FSM	ENSMUSG00000079435.10	ENSMUST00000152266.2	553	2	-1395	-2	-3	2	multi-exon	FALSE	canonical	3	10431	junction_1	0	36	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTGATTGCAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	133486434	133488747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133488323_133488685
37497	chrX	-	1682	6	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-9	intron_retention	FALSE	canonical	3	11043	junction_5	2216.47873890096	6	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACTACTTTTGGTTTGC	NA	False	NA	NA	False	NA	NA	NA	101232929	101228555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101229267_101230001_101231059_101231427_101231609_101231899_101231978_101232903
37498	chr17	+	4082	8	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	12	3	intron_retention	FALSE	canonical	3	24	junction_3	48.6671326042368	7	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTCCCCTCCCATTTC	NA	False	NA	NA	False	NA	NA	NA	95057551	95082563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95074376_95078561_95078667_95079284_95079389_95082319
37500	chr5	+	1813	8	Antisense	novelGene_ENSMUSG00000029328.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCGGCCGCCGCCTGCGCC	NA	False	NA	NA	False	NA	NA	NA	100182598	100186769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100182843_100183492_100183599_100183962_100184509_100184718_100184838_100184945_100185076_100185426_100185587_100185669_100185841_100186432
37501	chrX	-	2644	16	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	68	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	195.082478283759	1	77	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800250	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766797_149768921_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786647_149797016_149797086_149800196
37502	chr12	+	2421	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	35	0	-9	0	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	605	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGTTTCATAATTCGT	NA	False	NA	NA	False	NA	NA	NA	36207147	36247290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
37503	chr7	-	3167	7	NNC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	-5	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	49.7474175767502	11	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAAGATAGAAACTGCC	NA	False	NA	NA	False	NA	NA	NA	25418421	25410551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_25412539_25412861_25412975_25413777_25413908_25414175_25414446_25415159_25415613_25417569_25417705_25418342
37504	chr2	-	3648	15	NNC	ENSMUSG00000043909.17	novel	3983	18	NA	NA	-59	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	69.6959870598365	1	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGGGATGTCTTCATC	NA	False	NA	NA	False	NA	NA	NA	121066546	121028735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030870_121033018_121033240_121034813_121035030_121035400_121035593_121038179_121038609_121039561_121039834_121041750_121041904_121046147_121046653_121054185_121054244_121058125_121058330_121059068_121059189_121066053
37505	chr5	-	1966	16	FSM	ENSMUSG00000025533.16	ENSMUST00000160129.8	2413	16	688	-241	14	-5	multi-exon	FALSE	canonical	1	102	junction_3	47.1472398155207	222	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATGATGGAGAGATGTG	NA	False	NA	NA	False	NA	NA	NA	130053172	130040103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882
37506	chr14	-	4561	18	FSM	ENSMUSG00000061244.15	ENSMUST00000162175.9	12699	18	300	7838	43	1827	multi-exon	FALSE	canonical	3	137	junction_14	16.0953043938104	59	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAACTAGTATTTATTCT	NA	False	NA	NA	False	NA	NA	NA	49303810	49249384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_49251807_49252873_49253090_49253654_49253764_49254930_49255018_49256858_49256980_49260655_49260765_49270727_49270876_49272264_49272475_49273455_49273539_49274215_49274357_49274460_49274506_49275129_49275240_49276811_49276841_49279941_49280007_49286160_49286356_49288776_49288925_49289754_49289850_49303582
37507	chr5	+	3165	22	NNC	ENSMUSG00000013629.17	novel	7137	44	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	288.863289464065	4	49	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	7073	False	NA	NA	False	NA	NA	NA	31212143	31235823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216397_31230168_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31232814_31232866_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
37508	chr13	+	1719	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4966	17059	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	50	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCATGACTGCTCCGCGA	NA	False	NA	NA	False	NA	NA	NA	97312922	97334762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97313100_97313306_97313409_97313562_97313656_97314389_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322177_97325469_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
37511	chr12	-	1967	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	31	-8	31	-6	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	1002	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGACTCTGGCTTTGT	7520	False	NA	NA	False	NA	NA	NA	102406041	102360348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
37512	chr2	+	1505	12	NIC	ENSMUSG00000027374.13	novel	718	5	NA	NA	-96	125	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	397.120336904912	98	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGCACATGGTATATA	7090	False	NA	NA	False	NA	NA	NA	127432264	127445900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_127432402_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
37513	chr14	+	2047	6	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-61789	-336	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_4	8.12403840463596	157	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	40938972	41010436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40939274_40986925_40987404_41001646_41001810_41002809_41002942_41003619_41003802_41009645
37514	chr11	+	2061	15	FSM	ENSMUSG00000018167.11	ENSMUST00000018311.5	2070	15	22	-13	22	0	multi-exon	TRUE	canonical	3	120	junction_11	11.573412528335	363	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGATGGTGCATTCCT	897	False	NA	NA	False	NA	NA	NA	98249215	98271938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
37515	chr3	+	1892	7	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	-1	-102	intron_retention	FALSE	non_canonical	0	0	junction_4	2324.25663146067	2	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGAGTCGCTCTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	121220144	121251746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245165_121245566_121245641_121248595_121248743_121250730
37516	chr2	-	2051	7	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-7	-605	intron_retention	FALSE	canonical	1	1	junction_4	105.660488778393	96	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTAGATGGTGGTTCCC	6112	False	NA	NA	False	NA	NA	NA	181007161	181000282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003349_181005806_181006192_181006397_181006505_181007011
37517	chr17	+	1753	13	NNC	ENSMUSG00000055817.19	novel	882	8	NA	NA	-18	70	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	397.799886877812	9	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTTGTTGAATTAAA	NA	False	NA	NA	False	NA	NA	NA	84036574	84107739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_84036738_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478
37518	chr4	-	2904	7	NNC	ENSMUSG00000043085.15	novel	2898	6	NA	NA	-52	165468	intron_retention	FALSE	non_canonical	0	0	junction_1	44.209413276159	258	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCCAGGATAGCCAGGG	NA	False	NA	NA	False	NA	NA	NA	141345344	141175218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141175238_141340099_141342018_141342255_141342422_141343514_141343933_141344605_141344781_141344950_141345024_141345209
37519	chr4	+	3087	12	FSM	ENSMUSG00000028759.14	ENSMUST00000097836.10	3113	12	11	15	3	7	multi-exon	FALSE	canonical	3	37	junction_1	20.9126479187884	127	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACAGCTTAGTGAAAAGTT	4576	False	NA	NA	False	NA	NA	NA	137943948	137970466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_137944052_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
37520	chr1	-	2475	8	FSM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	-26	0	-26	0	multi-exon	FALSE	canonical	3	69	junction_1	6.92820323027551	165	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTGTATATGTGTGT	7852	False	NA	NA	False	NA	NA	NA	179373858	179355619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
37521	chr8	+	1548	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	35	474	5	-474	multi-exon	FALSE	canonical	3	271	junction_6	38.5873603010105	407	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCAGGTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	13835649	13848719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
37523	chr19	+	5046	11	NIC	ENSMUSG00000024843.16	novel	744	8	NA	NA	-2366	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	67.2533270552469	109	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGACTGTTACCCTTC	9247	False	NA	NA	False	NA	NA	NA	3922297	3944367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_3925472_3925734_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
37524	chr15	+	2173	7	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-5	-5	intron_retention	FALSE	canonical	3	98	junction_1	107.370076526625	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAACCCCTTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	102427155	102432104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427280_102427556_102427727_102428909_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
37525	chr2	-	4300	5	Antisense	novelGene_ENSMUSG00000053164.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTCATGAACAGCACTTT	4607	False	NA	NA	False	NA	NA	NA	37426259	37381943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_37382090_37385592_37385768_37392877_37392973_37398938_37399089_37422525
37526	chr19	-	1791	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	-91	-703	-1	0	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	16	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	NA	NA	NA	10502547	10479004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
37527	chr7	+	1283	1	NIC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	2363	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	NA	False	NA	NA	NA	25366174	25367457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_25366200_25367500
37528	chr4	-	2523	5	NNC	ENSMUSG00000043257.16	novel	3979	4	NA	NA	22	824	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.945278472209	49	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCACAGGGTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	133399936	133388740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133389250_133389640_133390103_133391968_133393091_133397048_133397172_133399629
37529	chr2	-	3596	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-8	2335	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	66.810833702327	11	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATCAAGATGGTCTTTCG	NA	False	NA	NA	False	NA	NA	NA	156681728	156672633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156675347_156676378_156676959_156679742_156679834_156680337_156680457_156681635
37530	chrX	+	1316	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	72	130	8	-130	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	1231	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACAAATGTGGGTATCC	NA	False	NA	NA	False	NA	NA	NA	99537968	99559601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
37531	chr8	+	2570	7	NIC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	19	-3	intron_retention	FALSE	canonical	0	0	junction_1	514.790140629062	7	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTACTGCTTTCTAGGCCT	NA	False	NA	NA	False	NA	NA	NA	70980430	70987973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70980487_70982040_70982326_70983589_70983924_70984171_70985400_70986766_70986845_70987132_70987265_70987516
37532	chr1	+	1651	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	177	9	-37	-5	multi-exon	TRUE	canonical	3	291	junction_1	53.3666562565053	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGGAATCATTGTCGTC	8148	False	NA	NA	False	NA	NA	NA	134333695	134339469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
37533	chr9	+	2001	8	NIC	ENSMUSG00000032123.6	novel	2205	9	NA	NA	36	-299	intron_retention	FALSE	canonical	3	223	junction_1	29.3910995829329	23	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCCTCTAGTGTAGCAT	3838	False	NA	NA	False	NA	NA	NA	44238205	44244892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44244269_44244353
37534	chr2	+	1533	10	FSM	ENSMUSG00000000308.15	ENSMUST00000078222.9	1518	10	-15	0	-15	0	multi-exon	FALSE	canonical	3	125	junction_1	32.5602954456217	408	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	786	False	NA	NA	False	NA	NA	NA	121188241	121194218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121188341_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
37535	chr3	+	1755	17	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	1	1339	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	352.334690848063	1	43	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTAACTACGGTAATGAA	NA	False	NA	NA	False	NA	NA	NA	151916158	151931842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927723_151927882_151928465_151928618_151928922_151929003_151931716
37536	chr14	+	1887	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	54	2802	2	1258	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	1	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTCTGCTTGACATTGG	NA	False	NA	NA	False	NA	NA	NA	63359964	63380570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
37537	chr6	+	1919	8	Antisense	novelGene_ENSMUSG00000108053.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGCGCGCGCGCGGGCC	5340	False	NA	NA	False	NA	NA	NA	83282735	83294536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_83283791_83285913_83286031_83286434_83286527_83287394_83287473_83288186_83288345_83288793_83288912_83290342_83290509_83294401
37538	chr11	-	2524	8	NIC	ENSMUSG00000017747.14	novel	2462	9	NA	NA	-1	6	intron_retention	FALSE	canonical	3	37	junction_6	6.0810847582265	102	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTATTTTATGTTATC	NA	False	NA	NA	False	NA	NA	NA	100661769	100656851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100657851_100658109_100658196_100658839_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
37539	chr1	-	3325	12	FSM	ENSMUSG00000033684.15	ENSMUST00000035325.15	3348	12	18	5	18	-1	multi-exon	FALSE	canonical	3	21	junction_6	6.25887799202127	30	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCAGAACGTGTTTGACTT	NA	False	NA	NA	False	NA	NA	NA	155688617	155653908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
37541	chr7	+	1970	10	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	-11	-5	combination_of_known_junctions	FALSE	canonical	3	5	junction_3	261.52010521583	1667	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGAGGACTGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	63835195	63861170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851584_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
37542	chr14	-	2841	1	Intergenic	novelGene_587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCTTAACTGCTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	63745281	63742440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_63742400_63745300
37543	chr11	-	1763	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	-23	4	-23	-2	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	3577	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCACTGAATTCCACTTG	8170	False	NA	NA	False	NA	NA	NA	102908017	102884876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
37544	chr19	+	2244	9	FSM	ENSMUSG00000025227.15	ENSMUST00000086969.13	2278	9	36	-2	-19	2	multi-exon	FALSE	canonical	3	169	junction_1	30.2561977122044	297	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGGGTCTGTGCCGTG	4234	False	NA	NA	False	NA	NA	NA	46345354	46363693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
37545	chr18	+	1728	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	20	-1	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	1	94	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTCCACCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181400
37546	chr7	-	3233	26	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-4962	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	553.252038044145	1	140	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACTGGCTGTGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	44192804	44182176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183304_44183442_44183808_44183912_44183987_44184141_44184438_44184617_44185122_44185261_44185354_44185449_44187031_44187180_44187419_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191139_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192667
37547	chrX	+	1829	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	4	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	755.657869889893	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCATGTGTGCAGTT	NA	False	NA	NA	False	NA	NA	NA	139357365	139376872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917_139376148_139376262
37548	chr3	+	3361	5	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-6	-29	intron_retention	FALSE	non_canonical	0	0	junction_2	1495.49231024436	1	155	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTTTGAAATAAAGAACCA	NA	False	NA	NA	False	NA	NA	NA	89986954	90008174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993891_89995569_89997167_89997316_89997387_90006834
37549	chr7	+	662	3	NNC	ENSMUSG00000039187.17	novel	2864	22	NA	NA	-1572	3939	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	161	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTATTTATTGTTAGAT	7617	False	NA	NA	False	NA	NA	NA	79060911	79063269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79061002_79062366_79062785_79063115
37550	chr11	+	2430	11	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1352	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	24.272618317767	11	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGACCATGCTGTGTTCCTT	5761	False	NA	NA	False	NA	NA	NA	70546675	70553335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70547607_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549982_70551478_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
37551	chr12	+	2762	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	-46	-1683	0	-20	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	1132	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAAGGATACTAAAAA	NA	False	NA	NA	False	NA	NA	NA	105750969	105777651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
37553	chr11	+	3889	6	FSM	ENSMUSG00000047821.17	ENSMUST00000055006.12	3906	6	6	11	6	-11	multi-exon	TRUE	canonical	3	37	junction_4	2.33238075793812	77	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAAAATATATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	62711062	62733751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
37555	chr10	-	3477	4	Antisense	novelGene_ENSMUSG00000020255.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCAGCGCCACTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	83204699	83196116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_83196236_83197908_83197998_83200242_83200379_83201566
37556	chr10	-	2496	11	NIC	ENSMUSG00000004937.7	novel	1969	12	NA	NA	41	0	intron_retention	FALSE	canonical	3	99	junction_10	272.385829293669	2	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTCTGCTTCCTGTGT	4876	False	NA	NA	False	NA	NA	NA	80895908	80879908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
37557	chr4	-	1733	3	Antisense	novelGene_ENSMUSG00000078521.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	968	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTGCAGGAGGCAGGGC	2375	False	NA	NA	False	NA	NA	NA	134251727	134238340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_134238478_134248779_134248911_134250262
37558	chr9	-	2392	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	9	3	9	-3	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	286	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACCTGCTTTGAGATTC	NA	False	NA	NA	False	NA	NA	NA	103940324	103923800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
37559	chr16	-	2782	3	ISM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	7763	3	7763	-3	3prime_fragment	FALSE	canonical	3	357	junction_2	26	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGACTGTAAAAGGTT	NA	False	NA	NA	False	NA	NA	NA	8482256	8476446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_8478968_8481450_8481574_8482118
37561	chr7	-	1559	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	40	21	-12	8	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	61	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACATTGCAGAATTCTTGC	NA	False	NA	NA	False	NA	NA	NA	35237130	35193057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
37562	chr10	+	1886	5	NIC	ENSMUSG00000006732.15	novel	1791	6	NA	NA	9	0	intron_retention	FALSE	canonical	3	381	junction_2	22.792542640083	853	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGAGTGTTTGCCTG	NA	False	NA	NA	False	NA	NA	NA	126877809	126882234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126877940_126878928_126879093_126880335_126880739_126880894_126880997_126881147
37564	chr3	+	1988	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	36	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	347.33435700425	1	76	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGTTATTTTGTTTTC	4895	False	NA	NA	False	NA	NA	NA	34074292	34123489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101788_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
37565	chr11	+	3863	26	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	0	-29	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	51.6468624410041	1	158	19	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATTTAGAACCATCT	NA	False	NA	NA	False	NA	NA	NA	84771135	84801919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771342_84772016_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785483_84786093_84786191_84786303_84786384_84787953_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218
37566	chr15	-	3961	28	Antisense	novelGene_ENSMUSG00000064481.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	86	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCCACAGCCCCGCCCATG	NA	False	NA	NA	False	NA	NA	NA	88939329	88867118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_88867263_88869715_88869902_88872587_88872751_88878006_88878120_88879041_88879219_88880251_88880400_88880871_88881103_88881486_88881607_88882970_88883170_88888125_88888228_88889451_88889630_88889895_88889969_88891782_88891876_88895564_88895621_88896098_88896200_88896262_88896331_88902348_88902453_88904463_88904641_88905364_88905513_88906205_88906324_88907813_88907914_88908867_88909026_88910663_88910839_88931008_88931158_88937578_88937687_88938425_88938568_88938713_88938831_88939016
37568	chr19	+	3277	1	ISM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	38212	2751	2362	-2751	mono-exon	FALSE	NA	NA	NA	NA	NA	23	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCAAGCGCTATGTGT	NA	False	NA	NA	False	NA	NA	NA	23703004	23706281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_23703000_23706300
37570	chr17	-	2423	17	FSM	ENSMUSG00000024039.16	ENSMUST00000236853.2	6226	17	55	3748	21	-1	multi-exon	FALSE	canonical	3	120	junction_2	62.6156118212543	3	51	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCGTGTCGACCTTAT	1966	False	NA	NA	False	NA	NA	NA	31856118	31831615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
37571	chr14	-	2205	9	NNC	ENSMUSG00000021965.4	novel	2260	9	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	72.2253418129676	5	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATGTTGCCAACTCT	NA	False	NA	NA	False	NA	NA	NA	58063652	58044016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58044989_58045431_58045536_58047399_58047513_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
37572	chr19	+	2248	5	ISM	ENSMUSG00000024750.12	ENSMUST00000025659.12	2467	6	3028	274	234	-274	3prime_fragment	FALSE	canonical	3	378	junction_4	0.707106781186548	263	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAGAGGGAGACTTCTTG	NA	False	NA	NA	False	NA	NA	NA	21253637	21259380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_21253950_21254341_21254454_21255018_21255123_21256988_21257115_21257786
37573	chrX	+	1895	6	NIC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	17	-4254	intron_retention	FALSE	canonical	3	2276	junction_5	148.270833274788	26	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACCATTTGCCTTGTGC	5364	False	NA	NA	False	NA	NA	NA	158155190	158168670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_158155412_158159376_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
37574	chrX	+	2754	4	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-157	93	intron_retention	FALSE	canonical	3	590	junction_1	25.6298437156548	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAACAGATGACTCAATGT	NA	False	NA	NA	False	NA	NA	NA	37689297	37702396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_37691551_37694815_37694950_37700642_37700711_37702097
37575	chr14	-	1661	12	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5061	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	138.802195900414	10	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACCACTGAAGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	59607980	59586188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59599720_59600075_59607902
37576	chr14	-	3493	21	NNC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	100	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	59.6379912471907	1	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	70391160	70375616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388588_70388816_70388853_70389009_70389076_70389347_70389421_70389821_70389914_70390112_70390207_70391075
37577	chr16	+	1291	6	ISM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	3937	2239	-2009	-2239	intron_retention	FALSE	canonical	3	2657	junction_1	128.37133636447	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGATGGCCTGCTTGACCCA	NA	False	NA	NA	False	NA	NA	NA	20321503	20325834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130
37578	chr17	+	2274	7	NNC	ENSMUSG00000035473.11	novel	2314	7	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	52.2741172410719	337	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGACTCTTGTTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	80434896	80492531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457604_80489037_80489132_80490620_80490796_80491412
37579	chr17	+	5549	24	ISM	ENSMUSG00000032855.7	ENSMUST00000035565.5	14164	46	30088	73	878	-72	3prime_fragment	FALSE	canonical	2	8	junction_9	8.8118325673328	37	47	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCCCAAACAGACAAGACA	NA	False	NA	NA	False	NA	NA	NA	24799011	24815409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24799550_24799848_24800006_24800164_24800418_24800536_24800733_24804650_24804822_24804896_24805041_24805137_24805349_24805435_24805563_24806152_24806267_24806373_24806424_24806623_24806809_24806901_24806996_24809792_24809912_24809988_24810192_24810260_24810456_24810811_24810952_24811584_24811698_24812178_24812321_24812449_24812576_24812772_24812948_24813061_24813353_24813434_24813570_24813645_24813952_24814045
37580	chr9	+	1340	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-156	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6276.93498054584	2	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084764_64085141_64085300_64085504
37581	chr5	+	3468	16	NNC	ENSMUSG00000079659.6	novel	1040	5	NA	NA	5620	734	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	171	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCGCAACCAGCCACCGGA	6981	False	NA	NA	False	NA	NA	NA	9168867	9211720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_9170141_9170344_9170510_9171103_9171465_9171781_9171938_9174441_9174530_9177959_9178108_9179146_9179374_9180364_9180493_9182445_9182613_9186064_9186142_9187124_9187234_9190379_9190481_9198899_9199023_9200375_9200495_9201799_9201911_9211605
37582	chr13	-	2092	4	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9915	354	intron_retention	FALSE	canonical	3	9	junction_3	19.1543438647449	45	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTGAGATTCCTTT	NA	False	NA	NA	False	NA	NA	NA	66846331	66830548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66846221
37583	chr3	+	2920	2	FSM	ENSMUSG00000027739.10	ENSMUST00000054387.8	3492	2	245	327	245	-327	multi-exon	FALSE	canonical	3	63	junction_1	0	110	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAAGCGTTTCTTTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	51391631	51403326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_51392002_51400776
37584	chr7	-	2571	15	NIC	ENSMUSG00000038520.16	novel	2411	16	NA	NA	-2	-5	intron_retention	FALSE	canonical	3	201	junction_7	25.1253997835998	3	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGACTGCGCTGGCTGGC	7890	False	NA	NA	False	NA	NA	NA	44498312	44490461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44490845_44490966_44491054_44491406_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
37585	chr16	+	2273	6	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	-17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	59.3349812505237	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCTGTCTCTAGTTATTG	NA	False	NA	NA	False	NA	NA	NA	3702505	3722632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3702671_3715114_3715245_3717735_3717833_3718506_3718744_3719648_3719990_3721329
37586	chr5	+	1896	14	NNC	ENSMUSG00000029387.11	novel	2672	13	NA	NA	0	254	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	271.182486212518	972	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTTTCCTTAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	124717228	124734904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124717265_124720510_124720591_124721585_124721675_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
37587	chr6	-	1831	13	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	187.861355496251	29	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3540	False	NA	NA	False	NA	NA	NA	125168519	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148533_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
37588	chr4	+	2733	10	ISM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	70	6180	17	-727	5prime_fragment	FALSE	canonical	3	755	junction_7	68.4756422404851	2	100	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGTTTAAAAGATTTAT	9140	False	NA	NA	False	NA	NA	NA	152018217	152060414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653
37589	chr7	+	1928	11	NNC	ENSMUSG00000030523.19	novel	2575	11	NA	NA	-14	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	330.701678253982	1	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCTTCTAGAGGACTGA	NA	False	NA	NA	False	NA	NA	NA	63835283	63861165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63847024_63847105_63848910_63849107_63850091_63850193_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
37590	chrX	+	1195	10	Antisense	novelGene_ENSMUSG00000031171.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	3	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGTGGATAGCACATG	NA	False	NA	NA	False	NA	NA	NA	8106666	8116721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_8107070_8111298_8111339_8111520_8111714_8111792_8111891_8112575_8112661_8112771_8112876_8112967_8113019_8113106_8113163_8115218_8115297_8116634
37591	chr5	+	4088	11	FSM	ENSMUSG00000051674.16	ENSMUST00000063882.12	4116	11	28	0	-6	0	multi-exon	FALSE	canonical	3	110	junction_1	17.7721692542019	102	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	73648403	73718133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_73648535_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
37592	chr19	+	3302	10	NNC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	31	-94	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	102.385015300212	1	149	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCAAAAGGTCAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	10502660	10524923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510676_10510834_10512524_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
37593	chr5	-	3884	18	NNC	ENSMUSG00000035266.17	novel	3689	18	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_16	19.7491185033889	81	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGCGCTCTGGGTGATT	NA	False	NA	NA	False	NA	NA	NA	100946465	100910017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100910503_100912806_100912942_100914553_100914668_100916147_100916322_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100937991_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944031_100944929_100946159
37594	chr11	+	3860	4	NNC	ENSMUSG00000046311.14	novel	2992	4	NA	NA	11	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	56.5685424949238	1	115	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGATAAGGGGTAAAAACAA	4736	False	NA	NA	False	NA	NA	NA	49103525	49109573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_49103604_49104416_49104470_49105024_49105071_49105890
37595	chr7	-	2917	17	NNC	ENSMUSG00000031078.16	novel	2913	17	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	300.044345680768	1	131	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGATCTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	144024488	143989469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143990839_143991685_143991756_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
37596	chr4	-	1352	10	NIC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	-4	-14	intron_retention	FALSE	canonical	3	822	junction_9	189.380862578855	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6405	False	NA	NA	False	NA	NA	NA	129494413	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129485928_129486059_129486153_129486789_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
37597	chr8	+	1073	1	FSM	ENSMUSG00000071041.5	ENSMUST00000120826.2	1545	1	-65	537	-65	-537	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCCTGTGGGCGGCCCCA	NA	False	NA	NA	False	NA	NA	NA	100757124	100758197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_100757100_100758200
37598	chr10	-	1873	15	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	628.631214689211	1	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCCCTTAATGTCTTACT	NA	False	NA	NA	False	NA	NA	NA	116899669	116886912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890091_116890982_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
37599	chr16	+	1705	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-76	-660	-76	660	mono-exon	FALSE	NA	NA	NA	NA	NA	3	69	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATCTACCAA	NA	False	NA	NA	False	NA	NA	NA	24348067	24349772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24349800
37600	chr14	+	1638	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6575	False	NA	NA	False	NA	NA	NA	76741953	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744430_76744515
37601	chr16	-	1849	5	NIC	ENSMUSG00000022843.18	novel	3944	24	NA	NA	-1258	-79	intron_retention	FALSE	canonical	3	237	junction_4	16.9908063375462	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAACCCTACGATGACTCT	NA	False	NA	NA	False	NA	NA	NA	20529134	20526534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20526667_20526826_20526942_20527043_20527217_20527383_20528700_20529021
37602	chr2	-	1857	13	NIC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	11	3	combination_of_known_junctions	FALSE	canonical	2	18	junction_3	290.295347687297	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAATGACTCATTGTTTCA	8361	False	NA	NA	False	NA	NA	NA	155434719	155405105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155405640_155406679_155406870_155408722_155408805_155409702_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
37604	chr5	-	2464	11	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	-14	-969	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	294.782987975901	1	106	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTACTGGCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	4154435	4132113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4132780_4132970_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151173_4151355_4152927_4153027_4154133
37605	chr16	+	2958	6	NNC	ENSMUSG00000022883.12	novel	6601	29	NA	NA	17387	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.2727787306346	78	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCCTTCCTTGTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	72820695	72842983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_72820840_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
37606	chr11	+	2890	14	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	44	166	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	81.0948746729709	2	130	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATGGTAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	29476500	29495445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490613_29490862_29491340_29491482_29492344_29492510_29494268_29494411_29494912
37607	chr14	+	1707	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	73	1	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	265	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCAGTAGTTTTTATAC	2083	False	NA	NA	False	NA	NA	NA	122183798	122258447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
37608	chr19	+	3679	6	ISM	ENSMUSG00000033478.6	ENSMUST00000237170.2	5110	15	21250	-3	21250	3	3prime_fragment	FALSE	canonical	3	86	junction_4	8.07465169527454	65	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACATTGTCGTATATTT	9482	False	NA	NA	False	NA	NA	NA	57370711	57378021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_57370792_57371598_57371690_57372551_57372696_57373685_57373827_57374711_57374816_57374902
37609	chr11	-	3002	6	FSM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	49	0	-4	0	multi-exon	FALSE	canonical	3	31	junction_3	11.4262854856686	93	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGGTTTTTAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	62680239	62669212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
37610	chr11	-	1796	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	-62	0	-12	0	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	767	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	230	False	NA	NA	False	NA	NA	NA	61652900	61620479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
37611	chr14	+	1242	11	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-8	160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	703.754680268629	143	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAACAAGTGTACATAACT	NA	False	NA	NA	False	NA	NA	NA	21881625	21895747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213_21895438_21895660
37612	chr9	+	2145	10	ISM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	82	4	-2	-4	intron_retention	FALSE	canonical	3	651	junction_3	29.5108266385218	1	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGTGGCCTTTATCCTG	NA	False	NA	NA	False	NA	NA	NA	107464922	107470233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273
37613	chr10	-	2103	10	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-23	-11	combination_of_known_splicesites	FALSE	canonical	3	19	junction_9	86.1510301737594	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCCTTTCTAAAAGCCT	103	False	NA	NA	False	NA	NA	NA	41685890	41594852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41685783
37615	chr8	-	2194	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-7	0	intron_retention	FALSE	canonical	3	38	junction_10	43.2676553559353	130	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	NA	False	NA	NA	NA	57003914	56984556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097
37616	chr5	+	1623	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	9	0	9	0	multi-exon	FALSE	canonical	3	332	junction_5	31.8084545015595	2792	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	NA	False	NA	NA	NA	145020648	145045571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
37617	chr14	-	1871	10	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-4873	0	intron_retention	FALSE	canonical	3	15	junction_9	112.674555936802	2	27	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607792	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607693
37618	chr10	-	2601	12	Antisense	novelGene_ENSMUSG00000019878.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	269	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGGGGAACGCACACCACG	NA	False	NA	NA	False	NA	NA	NA	57389236	57362499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_57362696_57371991_57372103_57372250_57372374_57373587_57373716_57375509_57375586_57377463_57377526_57378716_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57387539_57387623_57387996
37619	chr3	-	4460	3	ISM	ENSMUSG00000027957.14	ENSMUST00000029569.9	5725	8	34709	2	-1513	-2	3prime_fragment	FALSE	canonical	3	122	junction_1	32.5	77	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGCTCAGTAGTTCCTCA	NA	False	NA	NA	False	NA	NA	NA	116471590	116463120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_116467368_116468819_116468954_116471511
37620	chr2	+	1473	9	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	460.561189610023	2602	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	NA	False	NA	NA	NA	151336108	151353225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151336333_151338503_151338602_151342634_151342710_151344928_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
37622	chr11	-	2988	7	NIC	ENSMUSG00000001034.18	novel	3069	7	NA	NA	52	-12	intron_retention	FALSE	canonical	3	31	junction_5	75.7840499196382	1	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAACCTGACTCTGCGT	NA	False	NA	NA	False	NA	NA	NA	61384962	61379649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384331_61384781_61384905
37623	chr2	-	1850	11	NNC	ENSMUSG00000017707.10	novel	3683	10	NA	NA	37	-1389	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.952253886333	63	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGTTTGTGTATTTG	NA	False	NA	NA	False	NA	NA	NA	163487008	163466580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163466829_163467229_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
37624	chr10	+	2570	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	38	5	-17	-5	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	710	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAACTTGCCTCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	61516126	61529071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
37625	chr8	+	2285	5	FSM	ENSMUSG00000036810.17	ENSMUST00000128290.2	1616	5	-43	-626	-12	0	multi-exon	FALSE	canonical	3	147	junction_2	25.4656631564937	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTAGTGGTTAGAGATT	NA	False	NA	NA	False	NA	NA	NA	88845384	88861734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88857030_88860415
37626	chr2	-	2801	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110907.8	3718	13	907	10	115	-10	multi-exon	FALSE	canonical	0	0	junction_3	17.8535710713571	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGTTAGGCTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	115895413	115693554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_115694995_115697290_115697386_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
37627	chr1	+	4267	25	Antisense	novelGene_ENSMUSG00000025982.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.799305253885453	1	228	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACGTACTTCAACTGCCA	NA	False	NA	NA	False	NA	NA	NA	55026229	55066640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_55026640_55027088_55027317_55029465_55029734_55033488_55033625_55034531_55034641_55035970_55036096_55036184_55036360_55037204_55037419_55038785_55038910_55039171_55039326_55039401_55039532_55039797_55040073_55040169_55040258_55040541_55040721_55042261_55042363_55042449_55042646_55044957_55045078_55045325_55045543_55046638_55046879_55051262_55051425_55053634_55053719_55055532_55055650_55055937_55056042_55058391_55058562_55066499
37628	chr15	-	1313	9	FSM	ENSMUSG00000022474.16	ENSMUST00000229385.2	1291	9	-22	0	5	0	multi-exon	FALSE	canonical	3	23	junction_4	470.161341988046	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845065	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
37629	chr13	+	3264	29	NNC	ENSMUSG00000101308.2	novel	1613	4	NA	NA	7395	140120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	109	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAAACGACGAGGGCGC	NA	False	NA	NA	False	NA	NA	NA	106931972	107073424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_106932304_106948715_106948801_106959463_106959560_106978596_106978718_106983845_106983959_106984738_106984844_106993251_106993327_106993736_106993817_106997368_106997449_107002373_107002487_107007181_107007297_107011998_107012150_107013441_107013478_107016118_107016252_107019348_107019459_107020036_107020080_107023172_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032383_107033722_107033772_107035425_107035486_107037189_107037326_107046707_107046912_107047251_107047327_107056032_107056135_107061523_107061663_107073265
37630	chr13	-	2282	15	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	-13	-7	intron_retention	FALSE	canonical	3	642	junction_9	45.1293492448684	20	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGACCAGTTCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	55684347	55678235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683433_55683542_55683859_55684108_55684220_55684293
37631	chr8	+	3832	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	68	938	1	-938	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCTTGCTAAATAAAATGT	NA	False	NA	NA	False	NA	NA	NA	27513894	27529418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
37632	chr9	+	3843	21	Antisense	novelGene_ENSMUSG00000102670.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	196	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGCGCTGGGCCCGCCGG	NA	False	NA	NA	False	NA	NA	NA	107650829	107749973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_107650990_107651782_107651923_107655130_107655229_107656774_107656848_107659808_107660057_107660882_107660985_107664450_107664600_107664986_107665064_107665306_107665388_107665527_107665582_107666826_107666904_107668202_107668367_107668951_107669220_107673677_107673737_107677897_107677975_107710634_107710705_107724464_107724537_107728113_107728206_107729328_107730873_107737546_107737655_107749843
37633	chr2	+	2728	18	NIC	ENSMUSG00000027263.13	novel	2915	19	NA	NA	48	-1	combination_of_known_junctions	FALSE	canonical	3	47	junction_17	69.0773098816422	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTCTGGCCTTGTAGAAC	NA	False	NA	NA	False	NA	NA	NA	121001821	121029249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_121001953_121004038_121004168_121005820_121005944_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
37634	chr5	-	2637	9	NIC	ENSMUSG00000001082.13	novel	1906	13	NA	NA	-11	0	intron_retention	FALSE	canonical	3	25	junction_5	152.184458388496	1	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794495	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34791989_34792194_34792307_34792394_34793851_34793937_34794131_34794270
37635	chr10	-	3002	11	ISM	ENSMUSG00000020190.14	ENSMUST00000003433.11	3065	12	157	-4	157	-1	3prime_fragment	FALSE	canonical	3	433	junction_2	29.8035232816525	247	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGTGCAGTGACAGCA	NA	False	NA	NA	False	NA	NA	NA	80507653	80501161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_80503167_80503446_80503491_80503799_80503965_80504355_80504551_80504778_80504875_80504988_80505045_80505131_80505237_80505463_80505538_80505729_80505810_80507392_80507491_80507569
37636	chr13	-	2436	4	FSM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	-26	6	7	-5	multi-exon	FALSE	canonical	1	2	junction_1	6.68331255192114	72	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTATCGTCAGTGTCGTG	NA	False	NA	NA	False	NA	NA	NA	67229602	67217468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67229513
37637	chr9	+	2195	14	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	35	-48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	485.66204432895	1	76	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTTTGTATTGTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25163906	25219812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808_25219633_25219738
37638	chr10	+	1400	5	ISM	ENSMUSG00000006728.13	ENSMUST00000140254.8	2038	7	-53	1480	27	-360	5prime_fragment	FALSE	canonical	3	4641	junction_3	473.882105591676	69	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAACCACCGTGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	126899429	126901686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023
37640	chr11	+	2943	12	NNC	ENSMUSG00000000056.8	novel	4395	11	NA	NA	-35	-1302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	30.4761117669192	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTCTTGAGTGTGGCATT	NA	False	NA	NA	False	NA	NA	NA	121128043	121145380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_121128178_121129244_121129344_121133326_121133471_121135419_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118_121141257_121141585_121141744_121143506_121145098_121145282
37642	chr11	-	2423	18	Antisense	novelGene_ENSMUSG00000020280.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTAAAGACAGCGCACC	NA	False	NA	NA	False	NA	NA	NA	23682061	23616394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_23616452_23617275_23617413_23622505_23622755_23623235_23623323_23649927_23649964_23652888_23653000_23656882_23656947_23657522_23657606_23658768_23658822_23661194_23661279_23662196_23662323_23667559_23667618_23668574_23668648_23668743_23668803_23670101_23670222_23675430_23675568_23678926_23679073_23681318
37643	chr8	-	1886	13	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-2	0	intron_retention	FALSE	canonical	3	26	junction_3	56.8391370448215	43	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	NA	NA	NA	106578603	106571304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572796_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
37644	chr9	-	1881	6	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	6423	70585	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCGAGACCTCCGCTGGCG	NA	False	NA	3	True	NA	NA	NA	58560152	58489547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58489808_58530967_58531136_58535113_58535210_58547949_58548084_58550809_58551043_58559162
37645	chr1	-	4370	8	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	-168	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	356.599357880544	836	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGAATTCAACTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	167112621	167050470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112344_167112513_167112586
37646	chr5	+	2822	20	NNC	ENSMUSG00000013629.17	novel	6489	43	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	228.38191515305	6	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTCCTGGTTCGTCATGA	7092	False	NA	NA	False	NA	NA	NA	31212162	31235818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216387_31230585_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
37647	chr1	-	2330	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	46	2	2	-2	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	319	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTTGAGTTGCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	74343518	74327407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
37648	chr13	+	2441	6	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	90716	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	80.650852444348	187	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	36037510	36058046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_36037615_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
37649	SIRV1	-	1194	4	NNC	SIRV1A	novel	1300	4	NA	NA	-1	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2769.50155964731	3	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAATCGATGCATACTT	NA	False	NA	NA	False	NA	NA	NA	10367	1004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1430_6567_6988_7550_7815_10282
37650	chr17	+	1243	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	60	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1843.54175095114	3	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3096	False	NA	NA	False	NA	NA	NA	35816974	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820382_35820875_35821037_35821184
37651	chr17	-	2348	4	NIC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-7	-15	intron_retention	FALSE	canonical	3	702	junction_3	16.3367343397905	5	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGTTCTTTTCAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	46558901	46554860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46555147_46555231_46557141_46558654_46558727_46558820
37652	chr15	-	2547	6	NNC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-100	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1645.44588485918	1	126	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCATGAGTCTCAGTGGT	658	False	NA	NA	False	NA	NA	NA	36793863	36771015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772733_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
37653	chr3	-	1820	13	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.910335207467	19	11	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	178	False	NA	NA	False	NA	NA	NA	153650083	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628358_153628398_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
37654	chr5	-	3220	9	NNC	ENSMUSG00000025534.18	novel	2687	12	NA	NA	1902	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	40.2856984549108	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTCTTTCGTTACTAT	NA	False	NA	NA	False	NA	NA	NA	130029767	130017852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130028362_130028767_130028911_130029201_130029384_130029597
37655	chr17	-	2716	4	FSM	ENSMUSG00000055240.18	ENSMUST00000167107.10	2659	4	24	-81	6	81	multi-exon	FALSE	canonical	3	35	junction_1	5.79271573232759	81	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCATAAATTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	33613591	33599147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33601561_33605395_33605442_33605658_33605786_33613461
37656	chr2	-	1661	8	NNC	ENSMUSG00000018322.11	novel	1923	7	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.70982138013	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5894	False	NA	NA	False	NA	NA	NA	163913076	163895459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163896130_163896378_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
37658	chr7	-	2065	1	ISM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	10388	2828	509	1354	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAACTTTACGCACATTG	NA	False	NA	NA	False	NA	NA	NA	110671849	110669784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_110669800_110671800
37659	chr9	+	1215	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6747.89979723094	249	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083012_64084531_64084760_64085002_64085087_64085178_64085300_64085504
37660	chr12	-	1795	13	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1820	-3	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_11	88.7722976684356	283	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	9492	False	NA	NA	False	NA	NA	NA	110805541	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110796401_110796541_110800559_110800675_110805381
37661	chr9	-	2281	11	NIC	ENSMUSG00000032316.9	novel	2363	12	NA	NA	-8	0	intron_retention	FALSE	canonical	3	36	junction_8	95.4897376685055	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9799	False	NA	NA	False	NA	NA	NA	57672412	57657993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
37663	chrX	+	1739	6	FSM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	7	1	7	-1	multi-exon	FALSE	canonical	3	254	junction_1	50.9768574943572	658	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGGCATTTGGTCCACTC	NA	False	NA	NA	False	NA	NA	NA	47783887	47799599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
37664	chr7	-	5196	15	Fusion	ENSMUSG00000092187.2_ENSMUSG00000033458.18	novel	3460	14	NA	NA	6	1839	multi-exon	TRUE	non_canonical	0	0	junction_1	6.86011840202455	28	104	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAATAAATAAAAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	64023783	63994666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_63996282_63996339_63996644_63998595_63998725_63999064_63999260_63999782_63999887_64003323_64003475_64004118_64004284_64011687_64011808_64012879_64012989_64014277_64014410_64016302_64016537_64018767_64018970_64021266_64021408_64022008_64023503_64023682
37665	chr19	+	3677	22	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	492.718936223664	2	217	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	1851	False	NA	NA	False	NA	NA	NA	8875422	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889101_8889227_8889325_8889852_8889934_8890074_8890319_8891664_8891730_8892261_8892399_8892521_8892635_8892767_8892869_8892988
37667	chr3	-	3017	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	9	0	-8	0	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	239	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	6859	False	NA	NA	False	NA	NA	NA	108819034	108810122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
37668	chrX	+	1295	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-60	-25	60	mono-exon	FALSE	NA	NA	NA	NA	NA	12	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
37669	chr7	+	1419	11	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	4	164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	150.393783116191	1951	3	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCTCTCTCTGGCTTCT	NA	False	NA	NA	False	NA	NA	NA	139717480	139730524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139717687_139718231_139718297_139720105_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
37670	chr7	-	1072	1	NIC	ENSMUSG00000045659.19	novel	1713	4	NA	NA	2481	56	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCAACCCCCTCCAGG	NA	False	NA	NA	False	NA	NA	NA	115726279	115725207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_115725200_115726300
37673	chr6	+	1103	1	Antisense	novelGene_ENSMUSG00000030268.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTCGATTGTCCAGTCAC	NA	False	NA	NA	False	NA	NA	NA	144944891	144945994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144944900_144946000
37674	chr17	+	1867	10	NNC	ENSMUSG00000024151.14	novel	3283	16	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	760.077335246589	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTGGGGGTACCTTGT	4925	False	NA	NA	False	NA	NA	NA	87980021	88031138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_87980235_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024966_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
37675	chr5	+	2981	19	Antisense	novelGene_ENSMUSG00000105815.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	100	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCACTTCCTCTGGCTCG	5355	False	NA	NA	False	NA	NA	NA	122688256	122752600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_122689267_122693559_122693605_122697216_122697304_122697759_122697831_122698720_122698808_122705322_122705412_122706971_122707103_122710702_122710853_122729142_122729289_122731111_122731207_122732585_122732750_122738500_122738588_122740330_122740440_122740745_122740813_122745029_122745121_122747235_122747411_122748132_122748245_122749005_122749171_122752500
37676	chr3	+	719	7	NIC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	633	1	combination_of_known_junctions	FALSE	canonical	3	133	junction_1	2160.26220759323	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGACTCCAGAGGGTGTC	531	False	NA	NA	False	NA	NA	NA	88483888	88495341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
37677	chr11	+	923	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	174	350	160	-4	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTGGCTTCTATATGTG	NA	False	NA	NA	False	NA	NA	NA	48691360	48696911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
37678	chr11	-	2091	16	FSM	ENSMUSG00000020541.13	ENSMUST00000020849.9	4308	16	-8	2225	-8	0	multi-exon	FALSE	canonical	3	215	junction_9	19.1849478034792	643	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTGTTGTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	90578441	90536515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
37679	chr17	-	1686	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3172	7267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACTACGGCCGCAGACAA	NA	False	NA	NA	False	NA	NA	NA	13143397	13135432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141100_13141453_13141620_13142104_13142282_13142411_13142573_13143142
37681	chr18	+	2328	8	NNC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	-41	3	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_6	199.907019202755	49	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTTTTGTAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	21135006	21160587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21158468_21158573_21159142
37682	chr11	+	2268	10	ISM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	201	0	201	0	intron_retention	FALSE	canonical	3	373	junction_8	109.142561658741	35	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1431	False	NA	NA	False	NA	NA	NA	101010964	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028
37683	chr5	-	2140	11	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	12	-577	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88.5507763941119	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCCTCTGGTGGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	5609501	5588030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5589167_5589384_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
37684	chr12	+	1507	1	Intergenic	novelGene_4288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCCCCTTCTTGCTCTGG	NA	False	NA	NA	False	NA	NA	NA	4893460	4894967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_4893500_4895000
37685	chr12	+	1299	2	Intergenic	novelGene_4289	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGGGCATCAGATCT	NA	False	NA	NA	False	NA	NA	NA	4895457	4898013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_4895649_4896905
37686	chr14	+	4225	1	FSM	ENSMUSG00000065442.3	ENSMUST00000083508.3	107	1	-1656	-2462	-1656	2462	mono-exon	FALSE	NA	NA	NA	NA	NA	110	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGATCTTGTATCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	115279932	115284157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_115279900_115284200
37688	chr2	+	1625	6	NNC	ENSMUSG00000026864.14	novel	3672	9	NA	NA	-3	-73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	935.172796866975	24	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTCTAATTTTTGTGAAA	NA	False	NA	NA	False	NA	NA	NA	34662103	34666470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663897_34665552
37689	chr17	-	3291	7	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	273	1827	multi-exon	FALSE	canonical	3	36	junction_4	70.2558815252423	58	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTTTAAGTGGCTCAT	NA	False	NA	NA	False	NA	NA	NA	37299664	37278259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546_37298823_37299396
37690	chr11	+	2388	2	Antisense	novelGene_ENSMUSG00000052298.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAGCCAACAGGAACAGAA	NA	False	NA	NA	False	NA	NA	NA	54608276	54611183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_54610552_54611070
37691	chr14	-	2115	11	NNC	ENSMUSG00000022221.15	novel	1892	10	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	52.5510228254408	269	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	False	NA	NA	False	NA	NA	NA	56026310	56022453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_56022809_56022939_56023177_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025839_56026073
37692	chr2	+	3012	3	NNC	ENSMUSG00000036186.6	novel	1622	5	NA	NA	1102	3722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	151	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGCCGCCATGGCTGCC	9283	False	NA	NA	False	NA	NA	NA	26525316	26530231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26528110_26529426_26529483_26530068
37693	chr4	+	2962	4	Fusion	ENSMUSG00000046667.15_ENSMUSG00000052137.12	novel	3069	3	NA	NA	-50	0	multi-exon	FALSE	canonical	3	13	junction_1	20.4124145231932	48	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTGGAAGAGAATTTCCT	4	True	NA	NA	False	NA	NA	NA	12089388	12146731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_12089506_12140540_12140606_12143409_12143460_12144001
37694	chr4	-	5322	2	FSM	ENSMUSG00000049657.10	ENSMUST00000107817.3	3867	2	284	-1739	17	0	multi-exon	FALSE	canonical	3	12	junction_1	0	31	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACGGTCTCCTTTGCTTC	-2	True	NA	NA	False	NA	NA	NA	45012128	44991241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_44995387_45010951
37695	chrX	-	2189	14	NNC	ENSMUSG00000031297.15	novel	2371	13	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_13	563.990431745603	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAAAACCTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	100128960	100122820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127531_100127701_100127881_100128426_100128566_100128877
37696	chr5	-	3027	13	Antisense	novelGene_ENSMUSG00000029179.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	16	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCCGAAGTCCCGAAAGC	NA	False	NA	NA	False	NA	NA	NA	52982007	52940429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_52940556_52941329_52941448_52942437_52942527_52953322_52953593_52953921_52954000_52961718_52961792_52964296_52964448_52965599_52965701_52973140_52973263_52973501_52973578_52975946_52976001_52976460_52978047_52981824
37697	chr2	-	3336	17	Antisense	novelGene_ENSMUSG00000033059.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	106	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAAGCAGGCTGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150673659	150650727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_150650820_150653171_150653308_150655309_150655421_150655835_150655926_150656904_150657052_150657539_150657629_150658667_150658817_150659557_150659722_150660765_150660879_150661789_150661896_150662653_150662803_150665895_150665955_150668247_150668389_150669022_150669237_150670367_150670496_150671544_150671613_150672279
37698	chr13	-	1333	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	813	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311928_34312300_34312515_34312854_34312966_34313228_34313338_34314159
37699	chr1	+	1387	8	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_4	1035.56152568034	295	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
37700	chr19	-	2249	3	NIC	ENSMUSG00000060803.7	novel	821	7	NA	NA	3	0	intron_retention	FALSE	canonical	3	3446	junction_2	512	14	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGAAGAGGTGTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	4087922	4085413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4085662_4085823_4087192_4087289
37701	chr9	-	1352	4	NNC	ENSMUSG00000104208.2	novel	347	2	NA	NA	686	30654	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGAGGACCGCGGGCGGCG	NA	False	NA	NA	False	NA	NA	NA	108214786	108183633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108183806_108204831_108204939_108208067_108208201_108213846
37703	chr3	+	2958	14	FSM	ENSMUSG00000040213.14	ENSMUST00000106218.8	1888	14	-36	-1034	-36	1034	multi-exon	FALSE	canonical	3	81	junction_2	10.4835740777555	325	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACGGAAATAAATCGCCT	NA	False	NA	NA	False	NA	NA	NA	142406775	142451322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_142406937_142412449_142412553_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
37705	chrX	+	2304	7	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-3	294	intron_retention	FALSE	canonical	3	74	junction_1	116.525271460267	3	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCCCACATTCCAAGTT	1120	False	NA	NA	False	NA	NA	NA	20664049	20719983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20719699_20719798
37707	chr8	-	2596	5	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCCCGGGCTGGGCGCCT	NA	False	NA	NA	False	NA	NA	NA	20048157	20016498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20016683_20030544_20030923_20039779_20039901_20045729_20046276_20046790
37708	chr3	+	2660	6	FSM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	22	1728	-3	-728	multi-exon	FALSE	canonical	3	38	junction_2	3.66606055596467	153	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTGAGTTCACCTCGA	NA	False	NA	NA	False	NA	NA	NA	99048405	99125791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99123774
37709	chr7	-	1899	5	FSM	ENSMUSG00000059772.13	ENSMUST00000142337.7	1390	5	-59	-450	1	10	multi-exon	FALSE	canonical	3	27	junction_4	31.8276609256791	385	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTAGCCGGGCGTGGTGG	4988	False	NA	NA	False	NA	NA	NA	126294955	126289839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126294596
37712	chr2	+	3361	3	NNC	ENSMUSG00000007476.19	novel	4301	4	NA	NA	18151	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	24	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTTGGAGGTCTCCAT	NA	False	NA	NA	False	NA	NA	NA	30145884	30153800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30147345_30151859_30152754_30152793
37713	chr17	+	2340	16	FSM	ENSMUSG00000002833.12	ENSMUST00000226053.2	2270	16	-57	-13	-57	-2	multi-exon	FALSE	canonical	3	507	junction_6	104.875926694356	530	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTTTATTGGCTTAGGT	NA	False	NA	NA	False	NA	NA	NA	56386576	56407605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403847_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
37714	chr19	+	552	1	ISM	ENSMUSG00000033760.18	ENSMUST00000182065.2	4194	2	2098	2128	1758	-1487	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4808690	4809242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_4808700_4809200
37716	chr5	-	3217	21	NNC	ENSMUSG00000015882.19	novel	10477	8	NA	NA	27467	27215	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	159	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCCCGCGGCTTCCGAC	39	False	NA	NA	False	NA	NA	NA	45857453	45827307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_45827455_45828351_45828569_45829615_45829844_45831700_45831838_45832101_45832192_45833288_45833482_45833930_45834093_45835692_45835827_45837187_45837323_45838718_45838796_45839066_45839241_45844650_45844764_45845901_45846021_45848941_45849167_45850496_45850679_45851091_45851267_45852993_45853152_45853368_45853522_45853824_45853883_45856179_45856246_45857179
37717	chr9	-	1862	1	NIC	ENSMUSG00000037681.14	novel	4483	23	NA	NA	10873	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACTTGTGTGTATATT	NA	False	NA	NA	False	NA	NA	NA	99193883	99192021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_99192000_99193900
37718	chr4	+	3369	3	NNC	ENSMUSG00000029066.13	novel	579	3	NA	NA	164	-4	intron_retention	FALSE	canonical	0	0	junction_2	618	3	83	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTTGTGAGTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	155888379	155893284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155891443_155892935_155893112_155893154
37719	chr15	-	2770	22	Genic_Genomic	ENSMUSG00000115976.2	novel	544	2	NA	NA	-5655	27600	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGCACTGCTGCCCTTCTG	629	False	NA	NA	False	NA	NA	NA	80896266	80862007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_80862065_80886767_80886864_80887558_80887645_80888002_80888067_80890602_80890811_80890903_80891013_80891645_80891790_80892048_80892247_80892488_80892634_80892882_80893108_80893422_80893479_80893606_80893735_80893833_80893990_80894140_80894195_80894427_80894478_80894608_80894762_80894915_80894986_80895058_80895110_80895185_80895273_80895438_80895561_80895661_80895722_80895815
37720	chr19	-	2181	8	NIC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-4	-391	intron_retention	FALSE	canonical	3	1256	junction_7	110.319017917518	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACCTCGATCAGTAAGT	NA	False	NA	NA	False	NA	NA	NA	27407229	27396208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_27396274_27397417_27397522_27398696_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
37721	chr4	+	3126	15	NIC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	2	-5	intron_retention	FALSE	canonical	3	129	junction_3	18.7258688253791	1	90	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAATGTTGCCTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	141171996	141194531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
37722	chr10	+	866	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	204	-7	-19	0	multi-exon	FALSE	canonical	3	3700	junction_1	227.971623726484	12167	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	558	False	NA	NA	False	NA	NA	NA	128745771	128748691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
37723	chr2	-	2020	6	Antisense	novelGene_ENSMUSG00000006418.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	96	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCATCTCGGGACTCCG	9177	False	NA	NA	False	NA	NA	NA	167358086	167345414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_167345491_167349004_167349118_167352795_167352901_167353129_167353245_167354434_167354544_167356584
37724	chr15	+	3624	11	Genic_Genomic	ENSMUSG00000115546.2	novel	1266	1	NA	NA	-30592	-1127	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	188	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTCGGGTAAAGCGTCT	NA	False	NA	NA	False	NA	NA	NA	38488437	38519168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_38490643_38492480_38492602_38493723_38493879_38494533_38494594_38495495_38495594_38497507_38497797_38498913_38499086_38500541_38500716_38501647_38501845_38514716_38514853_38519151
37726	chr6	-	2087	7	NIC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-3	-240	combination_of_known_splicesites	FALSE	canonical	3	32	junction_5	439.124507780348	1642	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCTAGTACATCAGAAGG	NA	False	NA	NA	False	NA	NA	NA	120893817	120870054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120883389_120883525_120893694
37727	chrX	-	2272	16	NNC	ENSMUSG00000031333.8	novel	593	3	NA	NA	-52	-9936	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	76.8979121230797	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCATTTTTGTCCTAAAA	9990	False	NA	NA	False	NA	NA	NA	103457514	103334198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_103334344_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
37729	chr9	-	1091	8	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	344	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAGACTTGTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	64085794	64080658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080715_64082104_64082276_64082473_64082581_64082863_64083007_64083375_64083496_64084220_64084350_64085224_64085300_64085504
37730	chr11	-	1708	7	NIC	ENSMUSG00000014606.15	novel	1711	8	NA	NA	-6	-9	intron_retention	FALSE	canonical	3	687	junction_4	57.3255808712151	1385	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGAAAATGCTGTGTAAA	NA	False	NA	NA	False	NA	NA	NA	70537810	70535030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70535748_70535864_70535917_70535995_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
37731	chr19	-	2692	22	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-21047	-6606	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	138	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGAACCCCCACCCTCAC	1826	False	NA	NA	False	NA	NA	NA	10604065	10583001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583139_10584229_10584366_10585171_10585261_10585627_10585835_10588060_10588177_10589003_10589095_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596673_10598889_10599079_10599180_10599339_10599423_10599531_10599650_10599868_10600716_10600784_10600895_10600998_10602105_10602204_10602522_10602697_10603268_10603362_10603986
37732	chr16	-	1894	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	797	6185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGCGGACGGCGCCGCCC	NA	False	NA	-31	True	NA	NA	NA	22932697	22926507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22926571_22927335_22927382_22927466_22927600_22927867_22928008_22928732_22928904_22928983_22929092_22929327_22929469_22929871_22930011_22930249_22930342_22930565_22930644_22931914
37733	chr5	-	2054	12	NIC	ENSMUSG00000001082.13	novel	1906	13	NA	NA	4	-6	intron_retention	FALSE	canonical	3	69	junction_11	95.0557904905594	17	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCAAGTGCCTTTCCGT	NA	False	NA	NA	False	NA	NA	NA	34794480	34790998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
37734	chr11	-	3707	5	NNC	ENSMUSG00000017176.18	novel	1344	8	NA	NA	3695	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	240.981845789263	6	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	100328047	100320179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100320776_100321902_100323348_100323397_100323907_100325520_100325611_100326980
37735	chr12	+	3726	6	NIC	ENSMUSG00000021286.9	novel	1308	7	NA	NA	16	0	intron_retention	FALSE	canonical	3	728	junction_1	25.6935789644028	7	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	111780619	111794820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111794120_111794251
37736	chr12	+	2172	3	NNC	ENSMUSG00000037957.15	novel	2384	3	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	66.5	5	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5373	False	NA	NA	False	NA	NA	NA	110704452	110761462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110704527_110745729_110745913_110759547
37737	chr15	+	5087	10	NNC	ENSMUSG00000033039.11	novel	1907	9	NA	NA	368	-6	intron_retention	FALSE	canonical	0	0	junction_1	14.8955209109946	28	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACTGAATCTGCAGTGT	4137	False	NA	NA	False	NA	NA	NA	79009619	79021090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79009688_79009742_79009875_79011126_79011534_79014008_79014144_79014662_79014790_79014908_79015000_79015137_79015212_79015973_79016089_79016252_79016300_79017199
37738	chr8	-	1846	3	NNC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	6307	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	265.5	660	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	70969433	70966045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70966819_70968044_70968619_70968934
37739	chr12	+	2371	13	ISM	ENSMUSG00000035293.14	ENSMUST00000054308.13	6803	15	227	7225	0	-3506	5prime_fragment	FALSE	canonical	3	106	junction_10	21.5952348138812	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGTGCTGACCCACAAC	NA	False	NA	NA	False	NA	NA	NA	51395070	51416544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51412037_51412343_51414557_51414740_51415828
37740	chr12	+	1179	2	FSM	ENSMUSG00000035293.14	ENSMUST00000152236.2	2724	2	834	711	834	-4	multi-exon	FALSE	canonical	3	179	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAAATATCTCTAGAACC	NA	False	NA	NA	False	NA	NA	NA	51418291	51420149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_51418534_51419212
37742	chr10	-	1367	12	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	666.509645420092	2	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAATGTCTTACTGATCT	NA	False	NA	NA	False	NA	NA	NA	116899675	116886907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116888970_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
37744	chr8	-	1911	6	NNC	ENSMUSG00000015341.18	novel	1945	5	NA	NA	0	8	intron_retention	FALSE	canonical	0	0	junction_3	518.716647120564	1699	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTAGTCTATGTGATTT	NA	False	NA	NA	False	NA	NA	NA	23747037	23731353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_23732648_23734746_23734810_23735878_23735920_23735968_23735981_23740264_23740418_23746689
37746	chr8	+	5513	5	ISM	ENSMUSG00000031568.17	ENSMUST00000033973.14	2921	8	8787	8	-5457	-8	intron_retention	FALSE	canonical	2	108	junction_4	35.9330975564312	3	105	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTGATTTTTTTCTATA	NA	False	NA	NA	False	NA	NA	NA	47995485	48005852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48001006
37748	chr9	+	1910	15	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	-5	3	combination_of_known_junctions	FALSE	canonical	1	5	junction_2	88.7409667722494	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCTCTGGCTGTATAAAT	NA	False	NA	NA	False	NA	NA	NA	107828160	107848727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107828372_107833063_107833122_107833592_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
37749	chr17	-	2219	2	NIC	ENSMUSG00000052146.17	novel	753	4	NA	NA	-27	-373	intron_retention	FALSE	canonical	3	4719	junction_1	0	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGGAGGCTGACAGAGA	NA	False	NA	NA	False	NA	NA	NA	27854245	27851298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27853450_27854177
37750	chr1	-	2605	6	NNC	ENSMUSG00000026484.14	novel	3160	7	NA	NA	-821	-37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269.878046532133	2	91	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTATGGGAGCACATAAAC	NA	False	NA	NA	False	NA	NA	NA	151352734	151345193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151345816_151345940_151347169_151347402_151347561_151348822_151349096_151351890_151352107_151352626
37751	chr15	-	1646	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	153	4	153	-4	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	1	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGTCTTGTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	98851431	98847721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
37753	chr19	-	1920	9	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-53	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	282.798072836432	1	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAAATGGAGTTTGTG	8384	False	NA	NA	False	NA	NA	NA	43512977	43488199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495842_43496338_43496433_43504119_43504302_43512776
37754	chr19	-	2349	18	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	37	junction_17	91.7598792094124	267	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTTTAATCTTTTTTTT	1665	False	NA	NA	False	NA	NA	NA	6014191	5990573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
37755	chr14	-	2034	15	FSM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	69	0	11	0	multi-exon	FALSE	canonical	3	127	junction_6	11.1385064766607	4	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATTGTTAATCCGGG	NA	False	NA	NA	False	NA	NA	NA	52150876	52142739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
37756	chr3	-	1916	6	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_1	884.733767864661	5	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7200	False	NA	NA	False	NA	NA	NA	89905994	89902763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903123_89903212_89903317_89903710_89904125_89904882_89905044_89905311_89905834
37757	chr9	-	1529	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239284.2	1533	3	2	2	0	0	multi-exon	FALSE	canonical	3	405	junction_1	392.5	405	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	NA	False	NA	NA	NA	88404941	88403109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403770_88403970_88404435_88404536
37758	chr2	-	3796	6	FSM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	36	1	9	-1	multi-exon	FALSE	canonical	3	53	junction_4	7.56306816047562	62	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCGTGTGAATGGTTC	NA	False	NA	NA	False	NA	NA	NA	102016694	101780548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943877_101944025_102016624
37759	chr1	+	3663	8	FSM	ENSMUSG00000026305.16	ENSMUST00000097649.10	3645	8	-19	1	-9	-1	multi-exon	FALSE	canonical	3	45	junction_4	18.7823190848223	94	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTACTGGTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	90981156	91045036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91042317
37760	chr11	-	2026	13	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	9	-1	intron_retention	FALSE	canonical	3	831	junction_12	109.66473529201	4	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCGTGGCTGGCAGTCAC	NA	False	NA	NA	False	NA	NA	NA	96807313	96798642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
37761	chr18	-	1030	6	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	208	21563	62	-1096	5prime_fragment	FALSE	canonical	3	215	junction_1	43.046951111548	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATAAATTGTTTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	24663053	24639579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
37763	chr13	-	2150	12	NIC	ENSMUSG00000021569.11	novel	3399	13	NA	NA	88	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	146.291625424771	134	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTATTTTTATTCTAA	NA	False	NA	NA	False	NA	NA	NA	74085815	74060576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068568_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
37764	chr17	+	3131	3	NNC	ENSMUSG00000048731.16	novel	1605	3	NA	NA	4	-1292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	29.5	320	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCAAGTCCAGGGACCAG	NA	False	NA	NA	False	NA	NA	NA	27236990	27244375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27237145_27241224_27243557_27243730
37765	chr1	+	3068	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	3	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	41.2301938982694	1	92	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATTTAATGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	180468933	180518241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180468963_180469414_180469558_180475865_180475899_180478311_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
37766	chr9	-	2044	15	NNC	ENSMUSG00000000168.11	novel	4035	14	NA	NA	231	176	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	438.389358438177	3	16	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCACTAGTTAATTTTAT	NA	False	NA	NA	False	NA	NA	NA	50570849	50547651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569213_50569257_50569299_50569464_50569590_50569983_50570090_50570490
37768	chr3	+	3485	7	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16444	6269	intron_retention	FALSE	non_canonical	0	0	junction_1	0	30	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCGCCTGCGCAGCCC	NA	False	NA	-47	True	NA	NA	NA	54636102	54642456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54636313_54636612_54639637_54640118_54640166_54641077_54641151_54641521_54641588_54641716_54641754_54642428
37770	chr7	-	3289	5	NIC	ENSMUSG00000062040.15	novel	3845	5	NA	NA	-19	-136	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	15.9902313929474	6	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGGAACATTGTCATCAAG	NA	False	NA	NA	False	NA	NA	NA	29605976	29593276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605634
37771	chr4	-	2671	3	NIC	ENSMUSG00000028540.7	novel	2558	4	NA	NA	36	-2	intron_retention	FALSE	canonical	2	6	junction_2	30	6	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTTTCTCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	117749147	117746105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117746874_117746951_117748625_117748917
37772	chr11	+	2407	5	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	13	-10	intron_retention	FALSE	non_canonical	0	0	junction_2	484.150286584651	15	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGTAAATAGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	101518780	101526916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101519279_101521063_101522322_101524504_101524727_101525613_101525700_101526573
37773	chr5	+	1553	12	Fusion	ENSMUSG00000106918.4_ENSMUSG00000052139.19	novel	842	7	NA	NA	2259	-18	multi-exon	FALSE	canonical	1	10	junction_1	199.551770452956	23	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACCCTTCTTTCAAGT	NA	False	NA	NA	False	NA	NA	NA	31773754	32242288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_31773832_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
37776	chr6	+	2310	17	NNC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-41	-60	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.0890108409278	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTTCTTTTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	58572918	58669436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_58573003_58573921_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
37777	chr2	-	2894	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5281	415	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	42.8478412525065	3	116	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTGCATGGAGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	71164465	71104618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145322_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71164384
37778	chr2	+	1405	9	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	58	-707	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1337.49726635235	151	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	121244421	121268461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264125_121268126
37779	chrX	-	1833	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	36	-10	33	-1	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	2	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642065	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
37780	chr3	+	3108	15	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-1	-3599	intron_retention	FALSE	non_canonical	0	0	junction_2	556.882159703396	1	156	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACCCCTTTCAAACCAA	4855	False	NA	NA	False	NA	NA	NA	34074252	34119887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093262_34093380_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101788_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34115945_34116181_34118267
37781	chr5	-	1849	9	ISM	ENSMUSG00000029012.12	ENSMUST00000135906.8	2117	13	16194	22	-11444	-18	3prime_fragment	FALSE	canonical	3	560	junction_8	32.4420155816497	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATTCTTCCTCTTACA	NA	False	NA	NA	False	NA	NA	NA	22739108	22691504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731582_22734152_22734284_22738760
37782	chr14	+	3159	8	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	19.7556501863572	220	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCAGTGTACGTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	70004947	70021859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015161_70015265_70017952_70018023_70019680
37785	chr6	+	2793	1	NIC	ENSMUSG00000030087.12	novel	2373	3	NA	NA	5303	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAGGAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	90449402	90452195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_90449400_90452200
37786	chr9	+	1595	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	40	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2305.05305283607	2	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGTTGTCCTTCCTTAG	NA	False	NA	NA	False	NA	NA	NA	108765740	108778690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773944_108774427_108774504_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
37788	chr8	-	1467	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	909.417822296333	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTCCTAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	108315063	108307011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307741_108307822_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
37789	chr3	+	1676	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	3	-483	3	244	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	440	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTACTGATTGCCAGTG	NA	False	NA	NA	False	NA	NA	NA	135053809	135064311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
37792	chr4	+	2917	11	FSM	ENSMUSG00000028550.16	ENSMUST00000030279.15	3178	11	261	0	48	0	multi-exon	FALSE	canonical	3	33	junction_1	14.1265707091282	40	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99082431	99148024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99082690_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
37793	chr12	+	1928	11	NIC	ENSMUSG00000021235.14	novel	1602	12	NA	NA	-15	-3	intron_retention	FALSE	canonical	3	205	junction_5	16.4	803	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGAACTTGTGTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	84408788	84420559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84409012_84413658_84413794_84414916_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
37794	chr5	+	965	4	FSM	ENSMUSG00000037720.17	ENSMUST00000162543.8	664	4	52	-353	-1	353	multi-exon	FALSE	canonical	3	347	junction_1	54.4691553898983	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAGAAAAGATCTTTG	NA	False	NA	NA	False	NA	NA	NA	67418045	67422308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612
37796	chr19	+	2245	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237955.2	2193	4	-45	-7	-7	0	multi-exon	FALSE	canonical	3	38	junction_1	122.806984962402	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	3758325	3767880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_3758437_3764046_3764626_3765637_3765803_3766490
37797	chr4	-	2177	2	ISM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	24	12	-6	-12	intron_retention	FALSE	canonical	3	327	junction_1	0	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTAAAATGATGACTCAT	NA	False	NA	NA	False	NA	NA	NA	62443281	62440897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_62442348_62442554
37799	chr9	+	1388	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1	149	1	-149	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	2	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64080657	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
37800	chr4	+	1805	8	NNC	ENSMUSG00000028249.16	novel	2745	9	NA	NA	274	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	162.99931137954	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTCCGTCTGTCTGTGC	9150	False	NA	NA	False	NA	NA	NA	6377114	6395652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_6377143_6378965_6379048_6380989_6381100_6385025_6385145_6386649_6386709_6392945_6393118_6393636_6393729_6394509
37801	chr19	-	1676	3	NNC	ENSMUSG00000024742.16	novel	2373	3	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	416	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAATAAAATTATAAAAG	2155	False	NA	NA	False	NA	NA	NA	10181307	10176524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177439_10177955_10178462_10181051
37804	chr14	+	1651	9	NIC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	0	-6	intron_retention	FALSE	canonical	3	499	junction_4	30.7530486293636	1970	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTAAACCCCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	54598297	54606088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
37806	chr1	+	3255	10	NIC	ENSMUSG00000018189.13	novel	1696	11	NA	NA	-10	-5	intron_retention	FALSE	canonical	3	615	junction_7	228.682269200989	5	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTAAACTCCATTCTTC	NA	False	NA	NA	False	NA	NA	NA	143653032	143682674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
37807	chr7	+	2054	2	FSM	ENSMUSG00000045165.7	ENSMUST00000056288.7	1932	2	-122	0	-122	0	multi-exon	FALSE	canonical	3	90	junction_1	0	474	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTGTATGACCTCTG	NA	False	NA	NA	False	NA	NA	NA	126690408	126693158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126690645_126691340
37808	chr1	-	2758	10	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-46	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	18.9912260443255	99	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	NA	NA	NA	130390234	130366763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
37812	chr3	-	3996	1	ISM	ENSMUSG00000008730.18	ENSMUST00000118317.8	7939	16	47753	0	7204	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGCTGGTTTCAATTCT	NA	False	NA	NA	False	NA	NA	NA	103651126	103647130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_103647100_103651100
37813	chr17	-	2595	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-13	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	172.315008696928	1	109	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2367	False	NA	NA	False	NA	NA	NA	45744480	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703065_45703998_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
37814	chrX	-	3292	21	Antisense	novelGene_ENSMUSG00000031066.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATAGGAAGACGACCCT	NA	False	NA	NA	False	NA	NA	NA	20586771	20570172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20570356_20577984_20578096_20578266_20578398_20578562_20578681_20579073_20579218_20579349_20579416_20579535_20579630_20579981_20580159_20580250_20580409_20580742_20580968_20581088_20581174_20581264_20581362_20582983_20583193_20583991_20584070_20584402_20584512_20584592_20584662_20584915_20585028_20585299_20585452_20585535_20585654_20585831_20585919_20586002
37816	chr1	-	1748	14	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	48	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGAGTCTCCTTCTCTAAG	NA	False	NA	NA	False	NA	NA	NA	59750655	59724149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724382_59729641_59729722_59731495_59731546_59731765_59731885_59735133_59735257_59737479_59737616_59740040_59740109_59741969_59742067_59744788_59744914_59745789_59745926_59746160_59746222_59748159_59748294_59749650_59749812_59750429
37818	chr3	+	1959	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	11	0	11	0	multi-exon	FALSE	canonical	3	150	junction_1	0	248	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4380	False	NA	NA	False	NA	NA	NA	79536396	79540127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_79536664_79538435
37819	chr11	+	3342	25	NNC	ENSMUSG00000020782.19	novel	791	6	NA	NA	2352	-50	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	180.272633037359	2	47	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCAAGTAAAACTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	115727500	115746554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115727579_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
37820	chr17	-	4820	21	FSM	ENSMUSG00000032842.14	ENSMUST00000167360.8	4866	21	29	17	3	-5	multi-exon	TRUE	canonical	3	24	junction_18	9.45832966226067	59	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTACATTCTGTGTTTTA	7141	False	NA	NA	False	NA	NA	NA	46638920	46614163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46614579_46614838_46614952_46615082_46615181_46615255_46615402_46616326_46616593_46616886_46617048_46617474_46617645_46617882_46618227_46620963_46621160_46621302_46621457_46623215_46623414_46623760_46623839_46624556_46624747_46625141_46625241_46626309_46626482_46627482_46627563_46632478_46632589_46633062_46633220_46634277_46634506_46634618_46635841_46638697
37821	chr13	+	4136	3	FSM	ENSMUSG00000021732.15	ENSMUST00000022246.9	4114	3	-36	14	-36	-14	multi-exon	FALSE	canonical	3	7	junction_2	4	29	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGGGAAAAGAGAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	118851198	118928637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_118852248_118918041_118918146_118925654
37822	chr11	+	2705	10	NIC	ENSMUSG00000001100.11	novel	2054	11	NA	NA	86	-6	intron_retention	FALSE	canonical	3	1074	junction_8	51.6729984172788	20	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTCCTTCTGAGTATTGT	1721	False	NA	NA	False	NA	NA	NA	78403104	78413556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409806_78410005_78410132_78411977_78412058_78412619
37823	chr9	-	2152	10	Intergenic	novelGene_1021	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCACGTGGCTGACACCG	6294	False	NA	NA	False	NA	NA	NA	44245184	44237859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_44238116_44238441_44238503_44238848_44238970_44239249_44239463_44240286_44240432_44242411_44242497_44243196_44243387_44243856_44243946_44244110_44244263_44244344
37825	chr17	-	2392	8	NIC	ENSMUSG00000023980.8	novel	2793	8	NA	NA	0	-15	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	67.8948767265564	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGTAAATGACTCAGACA	NA	False	NA	NA	False	NA	NA	NA	47813212	47799221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_47800822_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
37826	chr15	-	1844	6	NNC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-1	938	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	350.006514225093	99	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTCACTGTTGCTTGCTT	NA	False	NA	NA	False	NA	NA	NA	97065126	97057875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97057892_97057994_97059277_97059835_97059964_97063549_97063775_97064383_97064508_97065057
37827	chr2	+	2227	8	FSM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	22	2	22	0	multi-exon	FALSE	canonical	3	287	junction_6	27.7995742149158	420	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	NA	False	NA	NA	NA	30282287	30290539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
37828	chr18	+	2499	6	NIC	ENSMUSG00000060450.15	novel	2886	8	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	90.4486594704421	35	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGACACGGTGTCCTGT	978	False	NA	NA	False	NA	NA	NA	38429739	38450900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_38429852_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
37829	chr15	-	956	6	Antisense	novelGene_ENSMUSG00000022551.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	808	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCCCAACGCTGACAGCA	4827	False	NA	NA	False	NA	NA	NA	76230135	76228570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76228697_76228779_76228907_76229009_76229166_76229248_76229413_76229675_76229776_76229852
37830	chr17	+	2230	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	57	-396	-15	396	multi-exon	FALSE	canonical	3	123	junction_2	77.8728932299295	662	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTATGTGTAATCAGAAGG	NA	False	NA	NA	False	NA	NA	NA	15720206	15738085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
37831	chr17	+	2887	13	FSM	ENSMUSG00000042345.16	ENSMUST00000151620.9	2539	13	-37	-311	-37	311	multi-exon	FALSE	canonical	3	21	junction_1	6.05300659911163	79	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACACACACTTCGCTCAGG	NA	False	NA	NA	False	NA	NA	NA	31431049	31461375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31431206_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
37832	chr7	+	3392	6	NIC	ENSMUSG00000033961.17	novel	4615	6	NA	NA	-2	43	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	4.88262224629348	45	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGTTTTCAACACTGTC	NA	False	NA	NA	False	NA	NA	NA	12711772	12718310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772_12715855_12716045
37833	chr11	-	2811	9	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	-5457	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	157.332400906488	1	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTTGGCATCTTTCAAT	6026	False	NA	NA	False	NA	NA	NA	115485804	115475084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477817_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479765_115485762
37834	chr3	-	2261	6	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	0	-25	intron_retention	FALSE	canonical	3	72	junction_5	388.841150085739	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAATAAATATGTTGTAT	6154	False	NA	NA	False	NA	NA	NA	153618592	153613115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
37835	chr4	+	1459	7	Intergenic	novelGene_2111	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_3	176.831998109945	1	44	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146797292	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146797381_146800390_146800518_146802050_146802609_146802693_146802945_146803701_146803931_146804434_146804537_146805900
37836	chrX	-	2163	13	NIC	ENSMUSG00000025268.16	novel	2183	13	NA	NA	1	1	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	48	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGCCATTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	149595963	149589415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
37837	chr17	+	2811	7	NIC	ENSMUSG00000024308.16	novel	2589	8	NA	NA	-37	-13	intron_retention	FALSE	canonical	3	105	junction_5	43.2614788877537	3	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCGAGTTTCCATGCGGG	560	False	NA	NA	False	NA	NA	NA	34138573	34148252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34138699_34138844_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
37838	chr2	+	3415	20	FSM	ENSMUSG00000027412.13	ENSMUST00000040872.13	3458	20	40	3	-23	2	multi-exon	TRUE	canonical	3	25	junction_3	8.54837950981163	96	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTTGAGAACCACGGTC	NA	False	NA	NA	False	NA	NA	NA	160730067	160747919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_160730138_160733915_160734309_160735913_160736010_160737242_160737494_160737670_160737752_160738669_160738791_160738934_160739287_160740549_160740650_160740788_160740950_160741489_160741584_160741679_160741750_160743577_160743671_160743752_160743797_160744482_160744622_160745522_160745672_160745843_160745931_160746402_160746556_160746719_160746835_160746922_160747027_160747177
37839	chr15	-	2794	9	FSM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	43	3	-11	-3	multi-exon	FALSE	canonical	3	33	junction_8	4.64858849544676	106	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCGAATTGTCTCTATGT	NA	False	NA	NA	False	NA	NA	NA	94441385	94420571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394_94434555_94437933_94438856_94441340
37840	chr5	-	3046	11	NNC	ENSMUSG00000029512.12	novel	5213	28	NA	NA	1236	-285	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	340.760385021499	2	139	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGACCTCCCTTGCATGT	NA	False	NA	NA	False	NA	NA	NA	110938822	110932638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938725
37841	chr19	-	3248	5	NNC	ENSMUSG00000024764.11	novel	1569	6	NA	NA	5927	-2	intron_retention	FALSE	canonical	0	0	junction_3	235.055711481342	1	131	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGCTGGGATGGCATCC	5120	False	NA	NA	False	NA	NA	NA	7212472	7203039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7205457_7205716_7205795_7207086_7207749_7211468_7211515_7212427
37842	chr19	-	4478	31	NNC	ENSMUSG00000048612.17	novel	6902	53	NA	NA	12647	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	37.0240312349815	5	28	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTTGTACACATGGATGT	NA	False	NA	NA	False	NA	NA	NA	37942927	37887688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913153_37919429_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814
37843	chr11	-	1994	5	NIC	ENSMUSG00000025384.16	novel	3766	9	NA	NA	124	-16	intron_retention	FALSE	canonical	3	47	junction_4	11.6404467268228	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTTCTACCCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	120264869	120260403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120264070_120264707
37844	chr9	-	3317	8	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	-5937	0	intron_retention	FALSE	canonical	3	8	junction_4	70.3805979757814	18	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	NA	False	NA	NA	False	NA	NA	NA	21721234	21711475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21713165_21713648_21713886_21714109_21714200_21714288_21714420_21715217_21715921_21716014_21716147_21720816_21720961_21721043
37845	chr14	-	2694	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	-232	-80	-12	-12	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	253	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAGAAAAAGGATCCTG	4974	False	NA	NA	False	NA	NA	NA	55881029	55873436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
37846	chr3	-	1533	3	NNC	ENSMUSG00000092607.10	novel	686	2	NA	NA	-1097	-68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCAGAAGCCCCTGCTCC	2886	False	NA	NA	False	NA	NA	NA	95039674	95037671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95037972_95038186_95039071_95039325
37847	chr17	-	2922	17	NNC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-1134	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	210.248801646407	1	148	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCATTCTTTGCCTGTCTT	8756	False	NA	NA	False	NA	NA	NA	24470302	24442305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470264
37848	chr16	-	2507	15	Antisense	novelGene_ENSMUSG00000039456.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTACGAGTCCGCCGCGG	NA	False	NA	NA	False	NA	NA	NA	93667392	93629147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_93629236_93638257_93638330_93641079_93641936_93642026_93642243_93644170_93644317_93646015_93646165_93649975_93650106_93650666_93650785_93652301_93652400_93657378_93657486_93659301_93659389_93659526_93659604_93661847_93661904_93663260_93663425_93667249
37849	chr2	+	2333	1	Antisense	novelGene_ENSMUSG00000026988.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	470	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTACCACAATGAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	59705912	59708245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_59705900_59708200
37850	chr5	+	4123	24	FSM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	280	152	-25	119	multi-exon	FALSE	canonical	3	55	junction_8	11.5830199691965	1	146	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAATGATATTACGTCA	NA	False	NA	NA	False	NA	NA	NA	3646345	3687080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
37851	chr1	-	5443	30	NIC	ENSMUSG00000056536.15	novel	6759	31	NA	NA	0	-1207	combination_of_known_junctions	FALSE	canonical	3	20	junction_28	13.8006014103214	2	54	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAAGGCTGAGGAGGAGG	NA	False	NA	NA	False	NA	NA	NA	105591398	105447357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_105449853_105474388_105474442_105476789_105476833_105480096_105480171_105481788_105481865_105482168_105482225_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105587017_105587092_105591224
37852	chrX	-	2195	2	Genic_Genomic	ENSMUSG00000083327.2	novel	2406	1	NA	NA	-256	565	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAATAAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	103392096	103388869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_103388961_103389992
37853	chr2	+	3416	16	NNC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	-11493	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	179.140243012749	2	150	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGGGTGCGGATTGAAG	6219	False	NA	NA	False	NA	NA	NA	153020825	153052386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032790_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037484_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
37855	chr10	+	1655	1	NIC	ENSMUSG00000063457.15	novel	500	4	NA	NA	0	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	62	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGATTCTGGGTTTTTG	6342	False	NA	NA	False	NA	NA	NA	80128286	80129941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80128300_80129900
37856	chr11	-	2094	19	FSM	ENSMUSG00000018574.15	ENSMUST00000018718.8	2020	19	-18	-56	3	1	multi-exon	FALSE	canonical	3	15	junction_17	40.1080331229001	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGCCGTGAATGTCAC	NA	False	NA	NA	False	NA	NA	NA	69906231	69901013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905942_69906022_69906088
37857	chr6	-	2323	16	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	-7140	-545	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	176.689482803401	1	88	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGTATATATTTATAAAAA	NA	False	NA	NA	False	NA	NA	NA	6181091	6041763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180966
37858	chr4	+	910	10	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	249.473717658733	1	33	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	9547	False	NA	NA	False	NA	NA	NA	148652839	148666858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148652973_148653107_148653159_148654843_148654882_148660265_148660362_148660606_148660682_148662874_148662963_148664815_148664988_148665558_148665621_148666214_148666292_148666740
37859	chr12	+	1667	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	-11	0	-11	0	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	1684	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	NA	False	NA	NA	NA	87194480	87211497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
37860	chr11	+	2454	11	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	4	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	99.2493828696179	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCATTTGCCAGCCTC	NA	False	NA	NA	False	NA	NA	NA	102139711	102155998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102139919_102141504_102141556_102145779_102145848_102145921_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
37861	chr4	+	2556	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	32	23	32	-22	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	168	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGAATTTATCTTTTTT	0	True	NA	NA	False	NA	NA	NA	59581594	59618666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
37862	chr4	+	2781	15	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_7	82.4728774216353	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	32	True	NA	NA	False	NA	NA	NA	11558978	11615805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601632_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
37863	chr11	-	2343	10	NIC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-81	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_1	287.717453994945	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8449	False	NA	NA	False	NA	NA	NA	69572753	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69564463_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
37864	chr4	-	3033	24	NNC	ENSMUSG00000036940.16	novel	3028	20	NA	NA	-17864	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	650.038236478969	12	18	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTAATTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	136347898	136277854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_136278345_136279182_136279330_136279771_136279900_136281106_136281222_136281523_136281712_136282483_136282617_136284952_136285065_136285808_136285883_136286483_136286619_136287633_136287725_136288328_136288472_136295883_136295979_136297768_136297851_136299528_136299636_136300383_136300477_136301335_136301415_136304381_136304516_136309350_136309411_136320275_136320442_136322195_136322328_136340028_136340102_136347251_136347277_136347556_136347728_136347838
37865	chr5	-	2046	13	NNC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	165.957825967925	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	22755356	22691486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738915_22751402_22751597_22752921_22753015_22755189
37866	chr2	+	2798	15	NNC	ENSMUSG00000052533.15	novel	985	2	NA	NA	-7347	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	322.674134288411	3	65	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATAGAGCCTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	30225604	30234267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30226097_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
37868	chr5	-	3419	17	NNC	ENSMUSG00000042508.17	novel	3498	17	NA	NA	-13	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.2948570538075	1	142	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAAATGCAAGATTTTGA	NA	False	NA	NA	False	NA	NA	NA	9211684	9168879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201909_9211609
37869	chr18	-	1748	18	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	6808	34849	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	30	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGCGCCGGCGTCGGAG	NA	False	NA	NA	False	NA	NA	NA	9993724	9958216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9958252_9959098_9959170_9959252_9959316_9960485_9960553_9962372_9962492_9963262_9963311_9963821_9963917_9968748_9968832_9970252_9970328_9975597_9975706_9977844_9977977_9984431_9984533_9986286_9986354_9986550_9986602_9986688_9986696_9992128_9992276_9992833_9992892_9993303
37871	chr15	+	1892	12	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	0	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	529.208125097699	2	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGGGTCTTTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	78959378	78978580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78963137_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
37873	chr1	-	757	1	Antisense	novelGene_ENSMUSG00000103046.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACACTTAGTTGATCCT	NA	False	NA	NA	False	NA	NA	NA	39033018	39032261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_39032300_39033000
37875	chr1	-	3142	1	ISM	ENSMUSG00000026667.15	ENSMUST00000150821.8	7676	8	18173	0	18173	0	mono-exon	FALSE	NA	NA	NA	NA	NA	119	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCTCTTATTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	170024130	170020988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_170021000_170024100
37876	chr7	+	1359	2	FSM	ENSMUSG00000030432.13	ENSMUST00000129888.2	478	2	-885	4	-25	-4	multi-exon	FALSE	canonical	3	6649	junction_1	0	186	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTTTTGTGCTCATTG	2784	False	NA	NA	False	NA	NA	NA	4795963	4797557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4797182_4797416
37877	chrX	-	1419	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	-3	1432	-3	-1432	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	6	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGTATTTGGTGTAT	NA	False	NA	NA	False	NA	NA	NA	158921412	158906636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
37878	chr16	+	3873	19	NNC	ENSMUSG00000022770.18	novel	4663	26	NA	NA	-11230	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.3352720748458	1	74	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATATGTTAAATGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	31561937	31692165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_31562193_31608994_31609120_31610532_31610703_31612321_31612459_31615683_31615784_31624431_31624553_31631485_31631643_31648283_31648387_31655007_31655123_31656867_31657045_31661587_31661658_31665651_31665752_31672660_31672703_31675258_31675310_31676364_31676467_31676709_31676883_31681990_31682101_31686648_31686741_31690492
37880	chr10	+	4247	1	Genic_Genomic	ENSMUSG00000038214.16	novel	NA	NA	NA	NA	18000	15	mono-exon	FALSE	NA	NA	NA	NA	NA	88	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCTCTTTAACGCTTCA	NA	False	NA	NA	False	NA	NA	NA	43387160	43391407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_43387200_43391400
37881	chr14	+	2845	16	NIC	ENSMUSG00000022214.16	novel	2593	15	NA	NA	-1	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_1	41.5654771281275	205	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	55797476	55807521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55797579_55797897_55798085_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
37882	chr1	+	2648	2	ISM	ENSMUSG00000026142.16	ENSMUST00000140020.2	3687	7	38512	0	38512	0	3prime_fragment	FALSE	canonical	3	189	junction_1	0	6	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	NA	False	NA	NA	NA	82355281	82423087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_82355426_82420583
37883	chr19	+	2267	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	-17	1	-17	-1	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	282	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTTGGAAGCAGGTGAAT	6532	False	NA	NA	False	NA	NA	NA	8718759	8733432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
37885	chr1	-	2892	11	FSM	ENSMUSG00000026277.15	ENSMUST00000151068.8	2821	11	-74	3	19	-3	multi-exon	FALSE	canonical	3	161	junction_5	14.8354305633507	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGATGTACAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	93563425	93549626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
37886	chr2	-	1436	3	Genic_Genomic	ENSMUSG00002075873.1	novel	97	1	NA	NA	-223	5357	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTCGCCAATGACCCAC	5277	False	NA	NA	False	NA	NA	NA	29821758	29816081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_29816113_29816713_29816842_29820481
37888	chr13	-	5182	2	Antisense	novelGene_ENSMUSG00000017756.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCAGCCGCCGGACTCCG	123	False	NA	NA	False	NA	NA	NA	73937651	73911841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_73912008_73932635
37889	chr11	+	3137	9	FSM	ENSMUSG00000037992.17	ENSMUST00000107474.8	2380	9	10	-767	10	-13	multi-exon	FALSE	canonical	3	15	junction_1	86.2060576467803	49	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTCTATAATGCCTCT	8816	False	NA	NA	False	NA	NA	NA	98818653	98865755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98818737_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
37890	chr11	-	2592	20	Antisense	novelGene_ENSMUSG00000098942.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.446593756538872	1	63	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGCTCCGCCCCTAGCCC	NA	False	NA	NA	False	NA	NA	NA	46031020	45946819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_45947038_45951749_45951822_45955836_45955910_45984689_45984771_45990685_45990755_46003581_46003810_46009247_46009317_46012244_46012414_46013919_46014003_46015832_46015985_46018076_46018250_46019612_46019699_46022445_46022643_46025250_46025359_46027069_46027289_46028190_46028268_46028365_46028476_46029667_46029800_46030516_46030603_46030830
37891	chr17	+	2908	6	FSM	ENSMUSG00000061130.14	ENSMUST00000112304.10	3323	6	343	72	-24	-72	multi-exon	FALSE	canonical	3	708	junction_5	340.544857544494	259	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTGTGACATATTACTCTT	NA	False	NA	NA	False	NA	NA	NA	85265779	85324553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
37892	chrX	+	1398	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	57	140	-8	-140	multi-exon	FALSE	canonical	3	248	junction_2	18.1592951405059	3569	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTGATTCTTCCTACT	NA	False	NA	NA	False	NA	NA	NA	73298349	73301353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
37893	chr11	-	1734	1	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	26433	1	2774	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGCTGCTTCGTTCTT	NA	False	NA	78	True	NA	NA	NA	97052274	97050540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97050500_97052300
37894	chr5	-	2603	11	NNC	ENSMUSG00000029560.13	novel	2627	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	62.5291132193637	20	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTTTCCACGCTGCAGT	7739	False	NA	NA	False	NA	NA	NA	140374998	140326055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338010_140338785_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
37895	chr5	+	1983	16	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-13	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	249.472634883178	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815916	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33821663_33821879_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
37896	chr2	-	2579	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	-40	47	-40	-47	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	3	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGACTTTTTACAGATTA	5874	False	NA	NA	False	NA	NA	NA	156834016	156769311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
37897	chr19	+	2812	10	ISM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	17474	121	17430	-121	3prime_fragment	FALSE	canonical	3	252	junction_7	17.3297717138548	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCTTTATACCTTTCT	NA	False	NA	NA	False	NA	NA	NA	11907236	11922334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
37898	chrX	+	2732	9	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	256	10	-27	-10	3prime_fragment	FALSE	canonical	3	455	junction_5	31.3996417177012	377	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCTGAAATGTGGACTTG	NA	False	NA	NA	False	NA	NA	NA	56099230	56112533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
37899	chr11	-	2156	10	NIC	ENSMUSG00000041231.16	novel	2088	11	NA	NA	5	-2	intron_retention	FALSE	canonical	2	61	junction_8	53.0739060760826	860	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTGGTTATCTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	44361320	44345401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356471_44356822_44356915_44357641_44357839_44361254
37900	chr6	-	1596	12	NNC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	212	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	204.943007598787	2	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAACTTAAAGTATATC	NA	False	NA	NA	False	NA	NA	NA	97182308	97160970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166724_97178897_97178959_97180434_97180556_97182266
37904	chr11	-	2367	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	29	-1105	-7	1105	multi-exon	FALSE	canonical	3	316	junction_7	41.1021624139417	1306	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAACTCACTAAAACGT	NA	False	NA	NA	False	NA	NA	NA	100986233	100981543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
37905	chrX	-	1741	8	ISM	ENSMUSG00000031387.15	ENSMUST00000155597.2	1310	11	13	-1	-2	1	intron_retention	FALSE	canonical	3	1767	junction_7	142.48752183104	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACCCTGTTCCACATGC	NA	False	NA	NA	False	NA	NA	NA	72974349	72965743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610
37906	chr14	+	1657	8	NNC	ENSMUSG00000022110.14	novel	435	2	NA	NA	5727	-6	intron_retention	FALSE	canonical	3	7	junction_1	588.264448377165	70	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTAATTTGGAGTTATG	NA	False	NA	NA	False	NA	NA	NA	73811820	73833576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_73811932_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
37907	chr11	+	1747	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	19	5	19	-5	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATATGGTTTTGAGAG	NA	False	NA	NA	False	NA	NA	NA	69471203	69482693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
37908	chr17	-	2574	15	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-4993	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	35.5883493891596	224	16	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTAGATAGACCCCCCC	3131	False	NA	NA	False	NA	NA	NA	29408070	29376894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29378215_29378652_29378805_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29408003
37909	chr9	+	1779	5	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-54	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	654.992748051457	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGTTTTCTAAATTTCC	NA	False	NA	NA	False	NA	NA	NA	108183583	108215118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108204854_108204941_108208069_108208191_108212249_108212381_108213846
37910	chr7	-	1626	13	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-17	-1	intron_retention	FALSE	canonical	3	31	junction_11	679.703468841785	4	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTCTGCTGTGTCCTCA	9511	False	NA	NA	False	NA	NA	NA	45083718	45071322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45071430_45071515_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45080743_45080799_45083675
37911	chr5	+	2649	13	NNC	ENSMUSG00000033773.15	novel	2268	13	NA	NA	0	-932	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	42.9279111482909	15	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATTTAAATCCATTTGT	NA	False	NA	NA	False	NA	NA	NA	107745586	107808772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107808047
37912	chr12	+	2802	8	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	9	-556	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	183.445148338624	1	115	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAACCGTACGATTTGG	NA	False	NA	NA	False	NA	NA	NA	59113737	59120228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115501_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
37913	chr13	-	2274	16	NNC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	-14	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	48.0872355435642	224	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGTTTCACTCATAAGC	NA	False	NA	NA	False	NA	NA	NA	55248081	55176025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223272_55223568_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
37914	chr8	+	1781	13	NNC	ENSMUSG00000003808.19	novel	1826	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	186.519193978052	1282	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	NA	False	NA	NA	NA	85583617	85595886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594072_85594203_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
37915	chr19	+	1253	9	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	1301	300	126	-300	3prime_fragment	FALSE	canonical	3	8704	junction_3	383.621700865579	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTCCTGTCCTGCC	2144	False	NA	NA	False	NA	NA	NA	8945705	8955543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
37916	chr13	+	3341	13	ISM	ENSMUSG00000021608.16	ENSMUST00000223060.2	2141	14	12519	-1293	12519	-4	3prime_fragment	FALSE	canonical	3	461	junction_9	77.5320722167428	265	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACAGGCTCGAGTGTGTT	5197	False	NA	NA	False	NA	NA	NA	73632388	73664537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_73632523_73637005_73637221_73642920_73643034_73644298_73644360_73647417_73647477_73649474_73649510_73651159_73651215_73653620_73653704_73658114_73658241_73658966_73659121_73659418_73659518_73661938_73662081_73662472
37917	chr17	-	1502	9	ISM	ENSMUSG00000019214.15	ENSMUST00000168914.2	3812	19	4454	9	-2011	7	intron_retention	FALSE	canonical	3	681	junction_4	46.6898008134539	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGCTCATAGGATGGTGC	-1	True	NA	NA	False	NA	NA	NA	25941886	25938012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619
37918	chr12	+	2863	23	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	20	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	94.2167472084738	1	96	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAACGCTACTGGCTATTT	NA	False	NA	NA	False	NA	NA	NA	17398478	17480086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17478805_17478960_17479115_17479584_17479865
37919	chr4	-	2684	5	Antisense	novelGene_ENSMUSG00000028837.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGCTGGGGGTGACGCAA	NA	False	NA	NA	False	NA	NA	NA	126603494	126571461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_126571638_126577913_126578037_126580818_126580892_126599849_126600014_126601346
37920	chr2	-	2779	20	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-10	-112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	275.009100831529	1	145	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGCCTTACTCCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	5017536	4996182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003450_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011388_5011877_5012013_5012133_5012244_5013290_5013624_5015499_5015587_5017515
37921	chr2	+	2037	6	FSM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	-6	3	-6	-3	multi-exon	FALSE	canonical	3	94	junction_1	85.0895998345274	516	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTATAAGAAGTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	32519509	32525061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
37922	chr11	-	3326	14	NNC	ENSMUSG00000020451.18	novel	3693	15	NA	NA	-4348	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	105.488494563185	2	157	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	NA	False	NA	NA	False	NA	NA	NA	3311108	3294255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3295885_3296234_3296395_3297051_3297094_3297573_3297764_3300375_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3311020
37923	chr5	-	2746	7	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	13	-8	intron_retention	FALSE	canonical	3	174	junction_6	91.3061090812414	4	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTACCAAGTGCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	34794456	34791000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34792504_34792713_34793851_34793937_34794128_34794270
37924	chr13	-	3292	10	NIC	ENSMUSG00000034928.17	novel	3797	11	NA	NA	3	-842	intron_retention	FALSE	canonical	3	163	junction_8	179.43560349738	2	108	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAGTCTTACTGTATATA	NA	False	NA	NA	False	NA	NA	NA	54841622	54828068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831576_54831773_54831964_54832150_54832302_54841541
37926	chr4	-	1541	14	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	530.006765614962	19	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	8837	False	NA	NA	False	NA	NA	NA	129436477	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129409991_129410716_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
37927	chr9	-	2230	11	NIC	ENSMUSG00000039048.16	novel	2212	11	NA	NA	-1	-21	combination_of_known_junctions	FALSE	canonical	3	10	junction_10	60.6555026357873	19	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35122251	35115524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122040
37928	SIRV3	+	1524	4	NNC	SIRV3A	novel	2373	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1363.38899641869	2	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1943	8292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2006_4003_4081_6057_7143_7992
37929	chr1	+	3024	2	Antisense	novelGene_ENSMUSG00000026656.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGAAAGGAGGGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	170791919	170796222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_170794273_170795551
37930	chr13	-	1776	1	ISM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	11704	16	11704	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATGCATGAACTTTAAAA	9617	False	NA	NA	False	NA	NA	NA	95650031	95648255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_95648300_95650000
37931	chr1	-	4647	4	ISM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	18053	3422	-4082	3243	3prime_fragment	FALSE	canonical	3	2230	junction_2	161.742593854144	7	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGATACTTGTAATCCG	NA	False	NA	NA	False	NA	NA	NA	13712717	13696975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454
37932	chr13	-	2210	16	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	-4	-3	intron_retention	FALSE	canonical	3	642	junction_8	42.4879590786221	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCAGTTCTTCCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	55684338	55678231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
37933	chr5	+	1979	7	FSM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	0	6	0	-1	multi-exon	FALSE	canonical	3	427	junction_1	117.255656106172	508	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGCGGTGTGCCGACTAT	NA	False	NA	NA	False	NA	NA	NA	114268446	114277378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_114268687_114269379_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
37934	chr2	+	2435	4	NNC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	30	15	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	21.6384431561566	15	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTACTTCTGGACTGCTC	3472	False	NA	NA	False	NA	NA	NA	91541296	91551905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_91541597_91542424_91543211_91548987_91549130_91550698
37935	chr4	+	2377	13	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	110.079863684912	1	32	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTGTGTATCCTTAAG	-17	True	NA	NA	False	NA	NA	NA	11558929	11615806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11559001_11563326_11563430_11569832_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11612371_11612439_11615442
37937	chr10	+	2428	9	NNC	ENSMUSG00000020211.16	novel	727	5	NA	NA	784	-6	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	460.497675754178	185	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTCTCCCTGTCTGCTGT	5907	False	NA	NA	False	NA	NA	NA	80635586	80640752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80636416_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639653_80639723_80639805
37938	chr6	-	1697	12	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3215.3341072877	4	59	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446856	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441482_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444034_51444167_51444272_51444370_51444407_51446650
37939	chr7	-	1271	5	Antisense	novelGene_ENSMUSG00000030663.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTCACCCCGTGCGGG	NA	False	NA	NA	False	NA	NA	NA	115704441	115692740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_115692761_115698674_115698757_115701176_115701236_115702441_115702562_115703451
37940	chr4	+	4077	5	NIC	ENSMUSG00000062157.7	novel	4182	7	NA	NA	4320	-6	intron_retention	FALSE	canonical	3	21	junction_4	3.24037034920393	2	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGCTAATGTGCACGC	NA	False	NA	NA	False	NA	NA	NA	135417917	135435486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_135417957_135426100_135426283_135428538_135428682_135431020_135431611_135432363
37942	chr11	-	4208	3	FSM	ENSMUSG00000003518.14	ENSMUST00000003612.13	4212	3	4	0	4	0	multi-exon	FALSE	canonical	3	8	junction_1	3.5	113	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTCTGTTTTGTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	101875621	101861968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101865766_101872442_101872670_101875437
37943	chr6	-	1515	7	FSM	ENSMUSG00000059900.15	ENSMUST00000151849.2	927	7	-186	-402	-186	0	multi-exon	FALSE	canonical	3	40	junction_5	15.4344492037203	219	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	115712440	115706091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770
37945	chr2	+	2348	12	Antisense	novelGene_ENSMUSG00000027206.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTAGTAGGAGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	125673044	125691773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_125674258_125675643_125675702_125676672_125676757_125678061_125678160_125681068_125681120_125681223_125681407_125682245_125682433_125684365_125684433_125684543_125684632_125686729_125686858_125690127_125690202_125691656
37946	chr19	+	2263	15	NIC	ENSMUSG00000025217.16	novel	361	4	NA	NA	20	-23	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	170.829264925838	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTATAAATATATTTAGTG	NA	False	NA	NA	False	NA	NA	NA	45352545	45517705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_45352714_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
37947	chr2	-	1711	12	ISM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	54	5	-8	-5	intron_retention	FALSE	canonical	3	250	junction_10	27.0884684684635	75	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCTTGTCTAGTAGGAT	9055	False	NA	NA	False	NA	NA	NA	25246317	25242306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040
37948	chr2	+	1297	6	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-11	-6	intron_retention	FALSE	canonical	3	2861	junction_1	925.883577994555	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802814_26802999_26803070_26803176
37949	chr9	-	3103	1	ISM	ENSMUSG00000079259.3	ENSMUST00000111816.3	9332	4	53770	364	53770	-364	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAACCTCAAGGCAAAAGT	NA	False	NA	NA	False	NA	NA	NA	114339667	114336564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_114336600_114339700
37950	chr9	+	1303	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9552.29991538527	6	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082331_64082865_64083005_64083373_64083499_64084222_64084353_64084599_64084760_64085131_64085300_64085504
37951	chr1	-	552	5	Antisense	novelGene_ENSMUSG00000026174.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCAGCGGCTCTGATGC	NA	False	NA	NA	False	NA	NA	NA	74562728	74545541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_74545620_74556227_74556409_74558058_74558173_74561473_74561586_74562661
37952	chr9	+	2315	12	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	176	0	intron_retention	FALSE	canonical	3	32	junction_9	362.946140393373	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	59446998	59472392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59470149_59470334_59470506_59471271_59472103
37953	chr17	+	1987	12	NNC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	29	-59	intron_retention	FALSE	canonical	1	1	junction_3	111.85572171033	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCACAAGGCCAATGCCTA	9279	False	NA	NA	False	NA	NA	NA	57071812	57076781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57071890_57072524_57072793_57073781_57074294_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
37954	chr8	-	2855	9	Antisense	novelGene_ENSMUSG00000001482.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTCTTCGATGGCCTG	NA	False	NA	NA	False	NA	NA	NA	124190009	124179539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_124179641_124180973_124181107_124182147_124182388_124183142_124183271_124183407_124183522_124185087_124185165_124186247_124186395_124186553_124186657_124188197
37955	chr7	+	2210	7	NIC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	152	0	intron_retention	FALSE	canonical	3	3512	junction_1	359.064254540728	4	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTCATGCCTCAGCTGT	NA	False	NA	NA	False	NA	NA	NA	12762203	12764959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12762706_12762807_12762915_12763014_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
37956	chr17	-	2049	7	NIC	ENSMUSG00000024026.14	novel	1764	8	NA	NA	-20	2	intron_retention	FALSE	canonical	3	13	junction_3	1361.55764557444	15	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTCTGGGCAGCAAGTC	NA	False	NA	NA	False	NA	NA	NA	30831606	30811837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_30812049_30813088_30813201_30815347_30816617_30816778_30816847_30819012_30819154_30822993_30823077_30831441
37957	chr9	-	697	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	-23	-59	-23	59	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTGACTGTAACAT	NA	False	NA	NA	False	NA	NA	NA	22097540	22096843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22096800_22097500
37958	chrX	+	2880	10	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	9	-5	intron_retention	FALSE	non_canonical	0	0	junction_4	254.032709082808	1	136	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTAAGCCTGGCTCTT	5971	False	NA	NA	False	NA	NA	NA	73348626	73355459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350810_73351256_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
37959	chr6	-	1385	6	ISM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	50	1096	50	754	5prime_fragment	FALSE	canonical	3	5197	junction_2	501.750376183217	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCTAACGTGAGAACTGT	NA	False	NA	NA	False	NA	NA	NA	125471704	125438324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
37960	chr12	+	1678	6	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	25	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	264.780210740909	40	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516915	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561169_86567636
37961	chr4	+	3594	24	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	5	-9	intron_retention	FALSE	canonical	0	0	junction_1	76.653887869565	1	152	14	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGGAAAAAAGAAAAAGAAAA	3538	False	NA	NA	False	NA	NA	NA	108477141	108491293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108477280_108478716_108478792_108480647_108480793_108481640_108481745_108482042_108482206_108482510_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485910_108486773_108486834_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367
37962	chr14	+	3565	1	Antisense	novelGene_ENSMUSG00000021273.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	65	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGGCTCCACCTAGACTC	NA	False	NA	NA	False	NA	NA	NA	63396496	63400061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_63396500_63400100
37963	chr11	+	1812	14	NNC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	318.433090516822	3	39	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1400	False	NA	NA	False	NA	NA	NA	120675106	120679928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120675169_120675946_120676040_120676525_120676669_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
37966	chr2	-	4496	9	NIC	ENSMUSG00000026860.17	novel	1851	13	NA	NA	-9	-60	intron_retention	FALSE	canonical	3	236	junction_2	45.3782712319454	8	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAATGGCCCCAGGCCCC	NA	False	NA	NA	False	NA	NA	NA	30249286	30235212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
37968	chr1	-	4256	25	NNC	ENSMUSG00000018417.15	novel	4767	31	NA	NA	7498	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	104.659160757936	1	115	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGTTCTGATAAAGAA	5879	False	NA	NA	False	NA	NA	NA	51852207	51788944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_51790456_51794801_51794930_51796259_51796417_51797067_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812552_51813477_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161
37969	chr8	+	2642	3	FSM	ENSMUSG00000052446.18	ENSMUST00000136516.9	601	3	10	-2051	0	-4	multi-exon	FALSE	canonical	3	96	junction_2	182.5	1	96	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTCCAGTTTGTAGAGAC	NA	False	NA	NA	False	NA	NA	NA	72704920	72724173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72705005_72719637_72719765_72721742
37970	chr10	+	2124	12	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	32	598	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	202.232089891338	1	107	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCAGATGTGGTCAAGT	1040	False	NA	NA	False	NA	NA	NA	127851096	127866504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859794_127862857_127863008_127865054_127865154_127865634
37972	chr10	+	3321	14	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	19	-4	intron_retention	FALSE	canonical	0	0	junction_9	850.76486992901	1	137	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACACTGGTGATATTTGA	NA	False	NA	NA	False	NA	NA	NA	111309121	111334007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329164_111329304_111329410_111329458_111330062_111330159_111331185_111331237_111331900
37973	chr7	-	1422	9	FSM	ENSMUSG00000052833.10	ENSMUST00000211741.2	1663	9	-9	250	-9	-250	multi-exon	FALSE	canonical	3	51	junction_1	1013.32101743475	95	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAAGGAATCAATAGTT	NA	False	NA	NA	False	NA	NA	NA	16121740	16054408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_16054806_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
37974	chr5	-	1528	5	NIC	ENSMUSG00000047215.15	novel	680	7	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	5084	junction_4	3071.29715063522	76	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTGTGTGTCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	65548743	65545709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
37975	chr9	+	1756	9	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	21	-1	intron_retention	FALSE	canonical	0	0	junction_3	377.925897994567	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTTGTTTTCATTTAA	2455	False	NA	NA	False	NA	NA	NA	21323218	21331555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21323394_21323528_21323598_21323688_21323828_21326210_21326316_21328360_21328440_21328567_21328684_21329579_21329719_21330549_21330663_21330734
37976	chr10	-	3440	5	ISM	ENSMUSG00000069520.7	ENSMUST00000219890.2	2949	7	0	1662	0	1339	intron_retention	FALSE	canonical	3	189	junction_4	18.07449860992	3	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGCTCCTCCCGTGTTC	NA	False	NA	NA	False	NA	NA	NA	115198129	115178308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558
37978	chr2	+	3119	13	NNC	ENSMUSG00000027242.15	novel	2789	13	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	21.7114920926428	1	149	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTAAATAATGTCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	121337253	121375334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357523_121359291_121359446_121361766_121361923_121364588_121364804_121365904_121366029_121372743_121373740_121374759
37979	chr7	-	1808	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	-7	414	-7	-408	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	3	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACAATCGAGTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	99002453	98995009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
37980	chr11	+	2260	4	ISM	ENSMUSG00000020812.19	ENSMUST00000153405.3	1151	5	-8	31	0	-31	intron_retention	FALSE	canonical	3	135	junction_1	21.6999743983464	127	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATTTTGAAGCACAAATAA	NA	False	NA	NA	False	NA	NA	NA	116562494	116566588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_116562583_116562989_116563565_116564763_116564898_116565125
37981	chr7	+	3372	3	FSM	ENSMUSG00000055652.15	ENSMUST00000171155.4	3403	3	30	1	-1	0	multi-exon	FALSE	canonical	3	36	junction_1	5	79	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTGGGTTCTGATT	NA	False	NA	NA	False	NA	NA	NA	75498087	75523878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_75498222_75515084_75516890_75522445
37983	chr7	+	3094	22	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	53.0771910392475	1	100	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGCCTGTGTGTCCTCT	543	False	NA	NA	False	NA	NA	NA	110628201	110655584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642945_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650732_110655282
37984	chr6	+	1485	5	Genic_Genomic	ENSMUSG00000108129.3	novel	3458	4	NA	NA	12666	-1256	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	37	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCCTCTGGTCTGCGCGCT	NA	False	NA	NA	False	NA	NA	NA	125255247	125262993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_125255610_125257926_125258616_125259318_125259465_125259718_125259943_125262929
37986	chr4	+	2184	13	ISM	ENSMUSG00000039953.14	ENSMUST00000039144.7	3319	19	40751	2254	259	-2254	internal_fragment	FALSE	canonical	3	455	junction_7	58.2210228353986	1	40	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTCTGTGAACGAGCC	8931	False	NA	NA	False	NA	NA	NA	149711845	149730102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778
37987	chr19	-	1936	16	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	-16	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	385.483038969723	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTTGGTTTAATGTCAA	NA	False	NA	-57	True	NA	NA	NA	27404525	27367454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400977_27403195_27403415_27404436
37988	chr5	+	2370	6	NNC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-1	40	intron_retention	FALSE	canonical	2	4	junction_1	44.5439109194512	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGAAATGGGGTGATCT	3416	False	NA	NA	False	NA	NA	NA	134961225	134970617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_134961265_134961462_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
37989	chrX	-	2951	19	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_18	19.3735214489605	1	28	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGTGTTTATATGTAT	NA	False	NA	NA	False	NA	NA	NA	134985985	134972848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979846_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981866_134985845
37990	chr1	+	2283	4	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	110	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	607.115767836379	1	55	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGGAGAGAGCGAGTCA	NA	False	NA	NA	False	NA	NA	NA	180720782	180726664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722363_180725046
37991	chr5	+	2695	7	Antisense	novelGene_ENSMUSG00000025747.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGCCTCTTCCTGCTGGG	2556	False	NA	NA	False	NA	NA	NA	30266099	30278619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30266132_30266965_30267038_30268233_30268410_30269082_30269187_30273465_30273638_30274830_30276705_30278354
37992	chr15	-	3203	17	NIC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-10	-8	combination_of_known_junctions	FALSE	canonical	2	2	junction_16	8.39270516579726	1	121	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCTGTGTCAGCCC	7020	False	NA	NA	False	NA	NA	NA	98560749	98543022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560658
37993	chr14	+	1657	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	2	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6575	False	NA	NA	False	NA	NA	NA	76741953	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744015_76744081
37994	chr2	-	3165	7	ISM	ENSMUSG00000036327.19	ENSMUST00000091263.12	4011	9	3029	508	3029	-20	3prime_fragment	FALSE	canonical	3	117	junction_2	7.09459888459759	114	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATTTGACATTTAGTAAA	NA	False	NA	NA	False	NA	NA	NA	26112354	26099156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_26101472_26103992_26104182_26107644_26107796_26108620_26108744_26110641_26110772_26110920_26111056_26112232
37995	chr4	-	2594	6	Antisense	novelGene_ENSMUSG00000006392.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGCGCAACCACTTCCC	NA	False	NA	NA	False	NA	NA	NA	118272955	118266566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_118266575_118268074_118268198_118268891_118268998_118269546_118269688_118269858_118269941_118270821
37996	chr8	+	2965	13	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-33	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	361.161282839429	1	120	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGAGGCTCACTTGA	5016	False	NA	NA	False	NA	NA	NA	107329949	107396874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384824_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390454_107395876
37998	chr7	-	2263	11	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	-16	997	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	705.847547279156	23	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTTCATAGTGCTAATT	NA	False	NA	NA	False	NA	NA	NA	27749497	27740134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746814_27748238_27748405_27748528_27748628_27749407
37999	chr2	-	2630	3	Intergenic	novelGene_2846	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCCAAAAGCACAGGATTA	NA	False	NA	NA	False	NA	NA	NA	177021619	177017772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_177018283_177019203_177020826_177021121
38000	chr6	-	3853	4	ISM	ENSMUSG00000042742.8	ENSMUST00000045235.8	4143	5	14624	2	14596	-2	3prime_fragment	FALSE	canonical	3	46	junction_2	10.077477638554	65	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTTGTCTGTTACTTG	NA	False	NA	NA	False	NA	NA	NA	13663341	13625673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_13629100_13630588_13630704_13641685_13641857_13663200
38002	chr14	+	2647	5	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4473	0	intron_retention	FALSE	canonical	1	6	junction_4	79.6629619082796	2	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	41761478	41825778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41818127_41819378_41825013
38003	chr6	-	1910	3	NIC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	-62	-17	intron_retention	FALSE	canonical	3	974	junction_1	37	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGTACTAAAATACTC	8783	False	NA	NA	False	NA	NA	NA	72339040	72336713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72337626_72337857_72338210_72338394
38005	chr8	+	1524	9	NNC	ENSMUSG00000003037.17	novel	4550	8	NA	NA	-16	-2627	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	337.136100113886	206	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACCTGCCCTCCCCTGG	NA	False	NA	NA	False	NA	NA	NA	72915186	72935121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888_72934334_72934589
38006	chr3	-	2310	1	Genic_Genomic	ENSMUSG00000104444.2	novel	NA	NA	NA	NA	6165	1694	mono-exon	FALSE	NA	NA	NA	NA	NA	91	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGGCTTGCGCCGCACGC	NA	False	NA	NA	False	NA	NA	NA	28861969	28859659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_28859700_28862000
38007	chr10	-	1270	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	16	678	16	-678	multi-exon	FALSE	canonical	3	688	junction_11	105.465203223192	28	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTCACTGAGTGACAGC	4788	False	NA	NA	False	NA	NA	NA	80895996	80880588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
38008	chr9	-	2690	18	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	584.641492489615	1	125	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGACCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	36678915	36643721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661002_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676356_36676477_36678845
38009	chr13	-	1601	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	13	-557	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	224.388551896531	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACCGATAACATCAATGTA	NA	False	NA	NA	False	NA	NA	NA	34314324	34311287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312510_34312850_34312966_34313228_34313321_34314152
38010	chr3	+	1791	16	NNC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	0	336	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	124.92120183006	26	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTTCCTTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	95466988	95493445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467035_95467121_95467381_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95493077
38011	chr16	-	1878	21	NNC	ENSMUSG00000022771.18	novel	3088	20	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_13	222.155187875503	854	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATCTGGTGCCGTGGTC	NA	False	NA	NA	False	NA	NA	NA	16929100	16906470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16914759_16914847_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
38012	chr14	+	2742	2	NNC	ENSMUSG00000115092.2	novel	3733	2	NA	NA	-10651	-1439	intron_retention	FALSE	canonical	3	21	junction_1	0	15	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGATGAAGTCCCCAGA	NA	False	NA	NA	False	NA	NA	NA	76753380	76766617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76753538_76764032
38013	chr2	-	1483	6	NIC	ENSMUSG00000027566.16	novel	914	7	NA	NA	-2	5	intron_retention	FALSE	canonical	3	3926	junction_1	616.459114621562	29	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAGAACCTGTCGTCAT	NA	False	NA	NA	False	NA	NA	NA	179684228	179678161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179678367_179678730_179678794_179679175_179679981_179680517_179680643_179681145_179681273_179684070
38015	chr14	+	1515	14	ISM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	27	2598	0	-2598	5prime_fragment	FALSE	canonical	3	387	junction_6	26.421257355332	2	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATATCCGAGCAGAGTATA	2	True	NA	NA	False	NA	NA	NA	25842606	25884630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565
38016	chr9	-	4545	2	NNC	ENSMUSG00000061536.14	novel	707	5	NA	NA	5812	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	39	50	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAATGTGTGTGTTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	121513727	121509114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_121510048_121510115
38018	chr4	+	3174	3	NNC	ENSMUSG00000028709.4	novel	2884	4	NA	NA	3670	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	30	5	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAAAGCAACCACTGGTG	NA	False	NA	NA	False	NA	NA	NA	115689524	115693371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115690443_115690829_115691033_115691318
38019	chr19	+	1388	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	153	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2978.23859618441	3	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	996	False	NA	NA	False	NA	NA	NA	8944557	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947326_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
38020	chr2	-	3150	11	NNC	ENSMUSG00000027408.8	novel	2366	14	NA	NA	25	0	intron_retention	FALSE	canonical	0	0	junction_4	52.5129507835924	3	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTCTTGAGTTCCTATT	NA	False	NA	NA	False	NA	NA	NA	130239469	130232695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130233063_130233157_130233261_130234990_130235602_130235685_130235859_130235951_130236354_130236656_130236746_130236841_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
38021	chr19	+	1955	3	NIC	ENSMUSG00000108414.2	novel	744	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	781	junction_1	138	56	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	8701503	8703807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8703467_8703602
38022	chr19	+	2411	14	NIC	ENSMUSG00000024735.14	novel	2134	16	NA	NA	4	-20	intron_retention	FALSE	canonical	3	125	junction_6	10.8202090126265	4	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCAGCGATCTAGTTTC	NA	False	NA	NA	False	NA	NA	NA	10872649	10882850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10880136_10880331_10880418_10880654_10881108_10882398
38023	chr1	+	1974	7	Genic_Genomic	ENSMUSG00000102457.2	novel	2980	1	NA	NA	-48688	-2252	multi-exon	FALSE	non_canonical	0	0	junction_1	0	207	16	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCAGGGGGCGGAGCCGCC	NA	False	NA	NA	False	NA	NA	NA	16640095	16689511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_16641507_16652150_16652227_16655499_16655654_16659446_16659536_16668176_16668275_16672482_16672578_16689460
38024	chr4	+	1781	12	NNC	ENSMUSG00000028601.19	novel	1319	10	NA	NA	-13	-9	intron_retention	FALSE	canonical	0	0	junction_6	383.505686490107	1	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAACTGTTAGCTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	108022701	108036494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030633_108030744_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108035858_108036024_108036103
38025	chr13	-	2547	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	56	-65	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	360.876000211076	1	121	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTATGGGATACTGTC	NA	False	NA	NA	False	NA	NA	NA	6698705	6631282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636520_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675260_6685976_6686035_6698606
38026	chr15	-	3178	4	FSM	ENSMUSG00000089715.13	ENSMUST00000129614.2	576	4	47	-2649	-1	-1819	multi-exon	FALSE	canonical	3	140	junction_1	9.89949493661167	52	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGTGCTGCCACCTAGT	NA	False	NA	NA	False	NA	NA	NA	79718428	79714796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79717780_79717902_79717969_79718115_79718160_79718343
38027	chr17	+	1885	10	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	-2	-14	combination_of_known_junctions	FALSE	canonical	3	42	junction_2	107.763229258625	712	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGAGACCATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	15720187	15737675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15720287_15721415_15721465_15721573_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
38028	chr10	-	2689	4	NNC	ENSMUSG00000061032.10	novel	600	3	NA	NA	-825	-1383	intron_retention	FALSE	non_canonical	0	0	junction_3	477.131242135979	6	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAGGCATCCATGTCTA	2242	False	NA	NA	False	NA	NA	NA	78242397	78239341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78241121_78241248_78241314_78241399_78241754_78241906
38032	chr17	-	2468	3	ISM	ENSMUSG00000012296.17	ENSMUST00000225413.2	2189	8	2910	9	2910	-6	3prime_fragment	FALSE	canonical	3	312	junction_1	2.5	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGGTAAGGCTTAATTTC	305	False	NA	NA	False	NA	NA	NA	46571803	46568808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_46570410_46570862_46570947_46571020
38033	chr5	-	1646	2	Genic_Genomic	ENSMUSG00000047501.4	novel	1816	1	NA	NA	7	-16	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATACAGGAAAGGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	134975781	134973988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_134974873_134975019
38034	SIRV6	+	1922	2	NNC	SIRV6A	novel	783	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	NA	NA	NA	8993	10968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_10135_10187
38035	chr3	-	2298	10	NNC	ENSMUSG00000055436.19	novel	3106	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.29459932461	4	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	157742200	157716555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717847_157721925_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088_157737286_157742152
38036	chr7	+	3301	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208998.2	2110	3	5	-1196	5	0	multi-exon	FALSE	canonical	3	29	junction_1	27.5	76	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTCTCCCTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	66872368	66878211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_66872787_66873356_66873640_66875611
38037	chr11	+	1567	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	42.6686920815557	614	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7072	False	NA	NA	False	NA	NA	NA	4168178	4172409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
38038	chr2	-	1913	11	NIC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	299	junction_5	40.5585995813465	830	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGCTCTCTAGACCCT	NA	False	NA	NA	False	NA	NA	NA	30068463	30063485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067734_30067931_30067978_30068401
38039	chr8	+	762	6	FSM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	13	26	13	-23	multi-exon	FALSE	canonical	3	25	junction_4	152.856010676715	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAATAAATAGTTTCGAAT	272	False	NA	NA	False	NA	NA	NA	106053006	106055661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
38040	chr17	+	1609	6	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1354.15287172461	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313445	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310_37320846_37320936
38041	chr1	+	2768	19	Antisense	novelGene_ENSMUSG00000099519.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	59	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCGCTACCACGCATACT	1056	False	NA	107	True	NA	NA	NA	75148364	75156930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_75148632_75148756_75148826_75148908_75149004_75149197_75149314_75149436_75149509_75150179_75150297_75150508_75150566_75150783_75150866_75150965_75151033_75151120_75151201_75151347_75151471_75151615_75151681_75152149_75152262_75152733_75152856_75153946_75154129_75154306_75154413_75154566_75154752_75155578_75155711_75156211
38042	chr8	+	2057	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	36	3	-19	-1	multi-exon	FALSE	canonical	3	319	junction_1	42.4480859403578	635	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACGTGTTTGCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	48563028	48594697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
38043	chr5	+	922	1	Intergenic	novelGene_659	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTATAAGCCTTTTACT	NA	False	NA	NA	False	NA	NA	NA	12914438	12915360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_12914400_12915400
38044	chr4	-	2377	9	NIC	ENSMUSG00000028896.14	novel	2285	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	372	junction_8	34.0330721504833	1	100	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGCTTTGTTTTTATGCG	5482	False	NA	NA	False	NA	NA	NA	132073015	132059234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
38045	chr3	+	2570	22	NNC	ENSMUSG00000015522.19	novel	2603	22	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	110.998130768106	1	51	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGGATCCTCTGAAATT	NA	False	NA	NA	False	NA	NA	NA	95341849	95402882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95400843_95400907_95401008_95401172_95401757_95401925_95402614
38051	chr15	+	3079	3	ISM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	239	14	239	-14	intron_retention	FALSE	canonical	0	0	junction_1	674.5	3	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTACACCTCACGCCAG	NA	False	NA	NA	False	NA	NA	NA	100513468	100518628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_100513606_100514793_100514913_100515805
38052	chr4	+	3761	13	NNC	ENSMUSG00000028580.16	novel	4614	18	NA	NA	83659	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	243.841934229715	1	167	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAACTTTGGAATCTGA	NA	False	NA	NA	False	NA	NA	NA	130474375	130508854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130474441_130476722_130476862_130478736_130478885_130479886_130480184_130481252_130481490_130490067_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
38053	chr11	+	1619	7	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	473.457378112211	24	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTTGTGGTGTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	4823997	4844199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839190_4843119
38054	chr17	-	3404	7	ISM	ENSMUSG00000024002.19	ENSMUST00000120276.9	4486	13	62599	-9	-20502	9	3prime_fragment	FALSE	canonical	3	11	junction_1	92.6078950318072	40	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTTCTAGAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	32440484	32423874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_32425968_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119
38055	chr9	+	1440	8	NNC	ENSMUSG00000032602.7	novel	1783	9	NA	NA	148	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	310.866859091851	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5225	False	NA	NA	False	NA	NA	NA	108539444	108561840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108539505_108549692_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
38056	chr3	+	1693	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10295	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	44	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGTGTTGTACTTTC	NA	False	NA	NA	False	NA	NA	NA	142418580	142450099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
38057	chrX	-	1211	4	FSM	ENSMUSG00000031146.7	ENSMUST00000136155.2	1212	4	17	-16	17	-3	multi-exon	FALSE	canonical	3	2052	junction_3	118.4229707447	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537594	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535998_7537381
38058	chr5	+	2631	16	NNC	ENSMUSG00000056310.15	novel	4698	9	NA	NA	6	-406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	96.8804532515317	423	14	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	3518	False	NA	NA	False	NA	NA	NA	130284465	130369998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316334_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
38059	chr13	-	1872	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	22	24	1	-24	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	536	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTGTGGATTTTTAAGT	4891	False	NA	NA	False	NA	NA	NA	33035146	33026098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
38060	chr7	+	1200	6	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	1845	155	-11	33	3prime_fragment	FALSE	canonical	3	7665	junction_2	464.880801926687	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGCATATCTTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	46498399	46504895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
38061	chr7	-	2197	6	NNC	ENSMUSG00000062116.11	novel	2042	5	NA	NA	17	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	26.9962960422351	203	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGACTCTTGAGGTTT	6253	False	NA	NA	False	NA	NA	NA	7124470	7117686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_7119200_7119611_7119711_7120784_7120912_7122030_7122201_7122370_7122410_7124221
38062	chr17	+	2697	1	Antisense	novelGene_ENSMUSG00000117294.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGCCTGCCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	28677363	28680060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_28677400_28680100
38064	chr8	+	2089	8	NIC	ENSMUSG00000019139.11	novel	1916	10	NA	NA	2	-4	intron_retention	FALSE	canonical	3	300	junction_1	50.4744833493891	162	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAAGCCTCCTTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	71047141	71049934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048816_71048897_71049063_71049145_71049562_71049646
38065	chr7	-	2222	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	2	0	2	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	2290	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTACCTTGACAGTGG	NA	False	NA	NA	False	NA	NA	NA	89590410	89566736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
38066	chr14	-	1958	10	NIC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	6	-2	intron_retention	FALSE	canonical	2	7	junction_4	50.0017283651893	503	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATTTCTGAAGTGAAATT	NA	False	NA	NA	False	NA	NA	NA	52542575	52532315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
38067	chr15	+	2443	8	Antisense	novelGene_ENSMUSG00000038736.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	32	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCGGCGCCACGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	44238631	44291281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_44239830_44259941_44260049_44263409_44263621_44264677_44264863_44268746_44268926_44269205_44269393_44284117_44284270_44291057
38068	chr13	-	2447	12	NNC	ENSMUSG00000021377.16	novel	2556	11	NA	NA	-5	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	610.722820628445	1	63	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGTTTTAAGTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	47259671	47238269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_47238500_47238553_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259166_47259548
38072	chr11	+	2697	12	ISM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	2083	9102	1993	-9102	3prime_fragment	FALSE	canonical	3	251	junction_9	29.8453313208765	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTTTGTGTCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72940691	72971041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
38073	chr10	-	2382	16	NNC	ENSMUSG00000034667.9	novel	5992	25	NA	NA	2041	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	327.413866535918	1	42	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATAGTGAAATACACCAAG	NA	False	NA	NA	False	NA	NA	NA	121447457	121425539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429638_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380
38074	chr11	+	1956	5	NIC	ENSMUSG00000017837.13	novel	988	6	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	52	junction_3	123.71413621733	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTCCCGTCCCCTAC	NA	False	NA	NA	False	NA	NA	NA	100513746	100518429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100513835_100515017_100515126_100515768_100515843_100515934_100516011_100516819
38075	chr15	+	1656	1	Intergenic	novelGene_3292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACTTTGTAAATGAGTTC	NA	False	NA	NA	False	NA	NA	NA	55452555	55454211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_55452600_55454200
38076	chr2	-	4495	2	NNC	ENSMUSG00000027189.17	novel	516	4	NA	NA	42740	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	72	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACCATTTGTCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	102187862	102130471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_102134850_102187745
38077	chr12	+	2257	18	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.368171382812	1	88	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGGTGCCTGTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	21336376	21364836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21336552_21340255_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351574_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
38078	chrX	+	3006	21	NNC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	-16	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	132.32266434742	1	104	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATCTTCCATTTCTACT	539	False	NA	NA	False	NA	NA	NA	20484005	20517123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512103_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
38082	chr13	+	1715	9	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	145.098027209194	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	99481297	99552070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_99481384_99484839_99484918_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
38083	chr3	+	1842	5	ISM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	6775	4	-865	-4	3prime_fragment	FALSE	canonical	3	2720	junction_4	188.179435645875	34	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTCTGACTAATTCTTT	NA	False	NA	NA	False	NA	NA	NA	87820402	87823435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
38084	chr17	+	1461	2	Genic_Genomic	ENSMUSG00000061062.6	novel	1444	1	NA	NA	23	526	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAGAAAATATCTAATA	NA	False	NA	NA	False	NA	NA	NA	78799033	78800980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_78799680_78800165
38085	chr18	-	2027	15	NNC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	67.5182515007186	260	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2769	False	NA	NA	False	NA	NA	NA	34884609	34866045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877121_34877923_34878078_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
38086	chr17	+	2575	9	NIC	ENSMUSG00000007603.10	novel	2749	10	NA	NA	-45	-88	intron_retention	FALSE	canonical	3	256	junction_2	24.2019498181448	1	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTACCTCCTGGCTTCGTC	9178	False	NA	NA	False	NA	NA	NA	57071711	57076752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076663_57076735
38087	chr11	-	2164	10	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	2	intron_retention	FALSE	non_canonical	0	0	junction_6	1770.70476308861	1	103	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674989_106675239_106675351_106675705_106675879_106675961_106676135_106676235_106676318_106677273_106677371_106677734_106677901_106679098
38088	chr1	-	2440	14	NNC	ENSMUSG00000026341.17	novel	2554	13	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	915.532431504256	1	98	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGATGGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	125363462	125320645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125320966_125321045_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363414
38090	chr16	-	1720	6	NIC	ENSMUSG00000058240.15	novel	1187	11	NA	NA	1	-335	intron_retention	FALSE	canonical	3	1178	junction_1	174.398394488023	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAATAAGAAATGATAATTA	9048	False	NA	NA	False	NA	NA	NA	91505760	91489409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91489593_91491069_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716
38092	chr4	-	3141	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	52	0	6	0	multi-exon	FALSE	canonical	3	67	junction_8	10.8355895086516	121	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	-5	True	NA	NA	False	NA	NA	NA	35225828	35191286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
38093	chr3	-	1757	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-6	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	1075.42116865905	1	63	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCACAAGGCTTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	108352491	108333932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334696_108335493_108335648_108335921_108336052_108336556_108336779_108338780_108338913_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
38094	chr3	-	3511	4	FSM	ENSMUSG00000050144.14	ENSMUST00000195657.6	3504	4	-3	-4	-3	3	multi-exon	FALSE	canonical	3	7	junction_3	25.4689353265241	70	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCTTTTGGGTTTTGT	4090	False	NA	NA	False	NA	NA	NA	88332422	88317801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332080
38095	chr17	-	2872	8	NNC	ENSMUSG00000045409.17	novel	3204	7	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.8744096130242	2	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGAGTTGCGTGGTAA	NA	False	NA	NA	False	NA	NA	NA	36582267	36569763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36570939_36571079_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
38097	chr17	-	2931	12	NNC	ENSMUSG00000023953.10	novel	3238	11	NA	NA	137	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.09346231420181	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATACTTTTACTACCCTAA	7283	False	NA	NA	False	NA	NA	NA	46513411	46482270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46482676_46482832_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
38098	chr4	-	3802	7	NIC	ENSMUSG00000028546.18	novel	4107	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	10.286182749473	36	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTTCCCAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	110209108	110060933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_110063857_110066936_110066976_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
38099	chr5	+	3630	18	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	-32	-18	intron_retention	FALSE	non_canonical	0	0	junction_6	168.973677850215	1	158	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGAGAAACTGCATCATT	NA	False	NA	NA	False	NA	NA	NA	45827228	45857451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833940_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45851093_45851269_45852995_45853887_45856182_45856253_45857189
38100	chr4	-	5323	2	NNC	ENSMUSG00000086810.2	novel	3414	2	NA	NA	-294	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	43	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACTCAAATGCTGAA	NA	False	NA	NA	False	NA	NA	NA	154740069	154730206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_154733095_154737634
38101	chr4	+	2500	18	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	24	-385	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	109.85725245497	3	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTAAGTAGAGACTATTTG	NA	False	NA	NA	False	NA	NA	NA	44300899	44364290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340696_44344908_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
38102	chr19	-	2056	1	NIC	ENSMUSG00000054237.7	novel	1402	14	NA	NA	14786	-2754	mono-exon	FALSE	NA	NA	NA	NA	NA	3	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGCGAATAGAAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	38197800	38195744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_38195700_38197800
38103	chr12	+	2071	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	47	-45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3016.56423808099	1	97	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGCATACAAGTATTAAA	NA	False	NA	NA	False	NA	NA	NA	24758286	24764100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758575_24758634_24758942_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763086
38106	chr1	-	3307	16	NIC	ENSMUSG00000003458.13	novel	2901	17	NA	NA	99	-46	intron_retention	FALSE	canonical	3	465	junction_8	32.4704309932728	6	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATATAAATAGCAAGTTTC	9095	False	NA	NA	False	NA	NA	NA	171910263	171893625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
38109	chr6	-	1309	5	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-14	0	intron_retention	FALSE	canonical	3	1245	junction_4	117.50957407803	581	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	NA	False	NA	NA	NA	124689118	124681343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124681622_124681901_124682052_124682120_124682620_124682703_124682806_124688838
38110	chr3	-	2607	5	NNC	ENSMUSG00000092607.10	novel	666	6	NA	NA	90	-16	intron_retention	FALSE	canonical	0	0	junction_2	216.042819829774	72	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGGGTCCTGGGAGCA	1566	False	NA	NA	False	NA	NA	NA	95040994	95037055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95037972_95038180_95039071_95039836_95040423_95040510_95040600_95040868
38111	chr18	+	2950	3	NIC	ENSMUSG00000024608.12	novel	667	4	NA	NA	0	-7	intron_retention	FALSE	canonical	3	24831	junction_2	1601	42	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTAAGCTATTTTGGTT	NA	False	NA	-16	True	NA	NA	NA	60907737	60911606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_60909624_60910001_60910962_60911502
38112	chr11	-	1409	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-73	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	4165.61858071523	1	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACCGTGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	69563141	69558120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558851_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
38113	chr14	-	1557	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	324	0	-12	0	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	9	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
38114	chr5	-	2780	14	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	342	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	320.589508774218	1	98	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGATTGTGGATCACT	NA	False	NA	NA	False	NA	NA	NA	38718544	38684163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692680_38694478_38694570_38697364_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422
38115	chr15	+	1734	11	NNC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	14.8121571690284	124	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGTACAAAGGAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	75734187	75739235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_75734331_75735253_75735478_75736092_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738002_75738144_75738321_75738394_75738540_75738638_75738713_75738845
38116	chr13	+	2601	8	Antisense	novelGene_ENSMUSG00000021196.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGGAGCCGCCCACGCCC	NA	False	NA	NA	False	NA	NA	NA	6663106	6698812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675249_6685959_6686037_6698608
38117	chr3	+	2462	11	FSM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	5	-496	5	0	multi-exon	FALSE	canonical	3	16	junction_7	17.3262806164508	113	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTATTTTTTTCAATC	NA	False	NA	NA	False	NA	NA	NA	159201099	159235592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
38118	chr3	+	2291	3	NIC	ENSMUSG00000001418.14	novel	861	4	NA	NA	-5	75	intron_retention	FALSE	canonical	3	936	junction_1	35.5	16	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGTATGTATTTTATTA	4022	False	NA	NA	False	NA	NA	NA	88232356	88235963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88233937_88235163_88235421_88235509
38119	chr7	+	1266	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	1	0	1	0	multi-exon	TRUE	canonical	3	645	junction_5	36.3137901908447	3075	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28524642	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
38120	chr5	+	3267	6	ISM	ENSMUSG00000029152.14	ENSMUST00000202237.4	774	7	-38	1065	-4	-14	5prime_fragment	FALSE	canonical	2	10	junction_1	386.31210180371	1	102	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCTACTTAATTCTCG	NA	False	NA	NA	False	NA	NA	NA	73450145	73466694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_73450320_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
38121	chr8	-	2134	15	NNC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	107.711064749114	8	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	13154820	13127188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_13128010_13128097_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145876_13147604_13147669_13148562_13148637_13150324_13150415_13154774
38122	chr2	-	459	1	FSM	ENSMUSG00000082321.4	ENSMUST00000122112.2	639	1	-191	371	-191	-371	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACATGATTGAGCGGCCA	6591	False	NA	NA	False	NA	NA	NA	156189951	156189492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156189500_156190000
38123	chr2	-	5408	14	NIC	ENSMUSG00000002107.19	novel	1721	14	NA	NA	145	-26	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	6.4284868971619	19	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATATTAAACCATTTTC	7998	False	NA	NA	False	NA	NA	NA	6877263	6546705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_6550487_6551852_6552025_6554642_6554787_6558595_6558776_6565469_6565602_6590784_6590920_6604844_6604909_6608834_6608994_6612692_6612773_6620498_6620634_6629481_6629531_6668925_6669009_6726227_6726425_6877166
38124	chr11	+	1862	9	FSM	ENSMUSG00000020897.13	ENSMUST00000108666.8	1831	9	-31	0	-31	0	multi-exon	FALSE	canonical	3	35	junction_1	202.492592457107	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68936441	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68936637_68936760_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
38125	chr12	-	2460	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	-40	2	-8	-2	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	191	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCAACACTTGCAAATTA	NA	False	NA	NA	False	NA	NA	NA	111780315	111769628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
38126	chr17	-	2644	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	112.156620125682	257	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5828	False	NA	NA	False	NA	NA	NA	46593930	46568799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46582725_46582856_46593271_46593366_46593885
38128	chr9	+	1253	9	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-156	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	6509.08873110323	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084602_64084760_64085002_64085087_64085178_64085300_64085504
38129	chrX	+	1069	10	ISM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	95	11436	0	1440	5prime_fragment	FALSE	canonical	3	1167	junction_1	597.038989979344	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTCTCGCCCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	20524659	20537982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928
38131	chr11	-	3472	18	NNC	ENSMUSG00000018849.7	novel	4531	23	NA	NA	-15866	-1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_16	63.4276963507257	251	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTCTTGTCATTTGTCC	NA	False	NA	NA	False	NA	NA	NA	35782405	35729227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35730072_35731136_35731259_35732580_35732815_35734981_35735075_35743020_35743186_35744186_35744305_35750922_35751015_35752635_35752777_35758061_35758255_35759923_35760011_35761300_35761382_35761742_35761852_35766440_35766980_35767355_35767446_35774074_35774318_35778889_35778964_35780116_35780234_35782275
38132	chr14	-	1544	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-16	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1043.90932915651	1	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCGCTTGCAACTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	63746221	63729807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730291_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
38134	chr4	-	1766	3	NIC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	2	-5	intron_retention	FALSE	canonical	3	515	junction_1	44.5	1684	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTCGTTTCCTTATGTG	3749	False	NA	NA	False	NA	NA	NA	41741357	41738497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41739581_41740549_41740977_41741101
38135	chr12	+	4216	11	ISM	ENSMUSG00000048285.10	ENSMUST00000057859.9	4662	14	51656	19	5645	-19	3prime_fragment	FALSE	canonical	0	0	junction_9	44.8630137195441	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTTTTTTGCCTTTAAG	NA	False	NA	NA	False	NA	NA	NA	70923943	70948989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_70924038_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
38136	chr16	-	1594	6	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	-33	-3	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	6009.22002925504	54	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACCAGCTGACAAGGCTAT	7398	False	NA	NA	False	NA	NA	NA	18066331	18057650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18058058_18058757_18058824_18059252_18059738_18063064_18063223_18065152_18065290_18065990
38137	chr11	-	1942	15	NIC	ENSMUSG00000020541.13	novel	4308	16	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	63.368093754842	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTGTTGTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	90578397	90536515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
38138	chr9	+	1118	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6509.08873110323	431	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGGTGACAAACCCTTGT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083491_64084724_64084760_64085002_64085087_64085178_64085300_64085504
38141	chr19	+	1729	11	FSM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	11	-4	11	0	multi-exon	FALSE	canonical	3	159	junction_6	16.3612346722367	562	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	5985	False	NA	NA	False	NA	NA	NA	46695907	46729538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
38142	chr1	-	3655	31	NNC	ENSMUSG00000018417.15	novel	4767	31	NA	NA	226	-1029	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	81.8820018210487	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAATTATCAGAATAGTT	NA	False	NA	NA	False	NA	NA	NA	51954845	51790181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852157_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954764
38143	chr19	+	3905	8	NNC	ENSMUSG00000024780.8	novel	5179	7	NA	NA	54	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	83.6711249049345	2	133	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAAGCTGTAGTTATGA	4023	False	NA	NA	False	NA	NA	NA	28967953	28997630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_28968070_28972440_28972723_28976660_28976752_28984363_28984488_28984972_28985096_28989288_28989454_28993405_28995945_28997165
38144	chr7	-	2445	3	FSM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	-199	-7	-197	7	multi-exon	FALSE	canonical	3	228	junction_1	10	719	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTTTTGATACATG	1959	False	NA	NA	False	NA	NA	NA	19093605	19089931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19091942_19093014_19093157_19093312
38145	chr10	+	4176	17	FSM	ENSMUSG00000034902.18	ENSMUST00000163075.8	4208	17	29	3	4	-3	multi-exon	FALSE	canonical	3	97	junction_16	27.8766815636295	184	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGCTCCTCTCCGGTGA	5004	False	NA	NA	False	NA	NA	NA	81128825	81155803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81128987_81140517_81140550_81141019_81141113_81141532_81141664_81142141_81142260_81143317_81143471_81144781_81145082_81146512_81146719_81147476_81147561_81147807_81147857_81148335_81148421_81148741_81148904_81149196_81149336_81149453_81149487_81149828_81149928_81150825_81150953_81153599
38146	chr5	-	2396	11	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	14	-54	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	553.020288958733	1	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGATGTTGAGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	117527073	117516523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522665_117523452_117523533_117524786_117524924_117525933_117525999_117526981
38147	chr5	-	1294	9	NNC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	446.440768047677	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	NA	False	NA	NA	NA	100186739	100182579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185764_100186578
38149	chr7	-	1758	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	-25	-77	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	759.84166771769	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTTTTTTTTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	99002346	98994678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995222_98995261_98995630_98996131_98996365_98996472_98996572_98998243_98998672_99002259
38150	chr11	-	1769	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	49	-126	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1157.60031962677	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTAGGTTTTTTTTGT	9730	False	NA	NA	False	NA	NA	NA	106679244	106672499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106672864_106673432_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
38151	chr11	-	2076	7	NNC	ENSMUSG00000020451.18	novel	3693	15	NA	NA	19	438	intron_retention	FALSE	canonical	2	6	junction_6	89.3582054927744	1	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGCTGTGATGAGGAAACC	9833	False	NA	NA	False	NA	NA	NA	3321357	3302331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3321151
38152	chr9	+	3164	11	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	-42	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.1106826671993	1	133	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACTGGTGAATAAGACTG	NA	False	NA	NA	False	NA	NA	NA	75375855	75393912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_75375966_75377587_75377649_75379458_75379554_75380085_75380262_75380603_75380662_75383697_75383793_75385260_75385396_75386953_75387087_75388729_75388947_75390380_75390484_75391931
38153	chr2	-	1587	11	NNC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	-7	-1	intron_retention	FALSE	non_canonical	0	0	junction_8	242.97785907362	42	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTATCTGGTTTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	130126361	130121233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123829_130125628_130125755_130125857_130125957_130126090_130126169_130126301
38154	chr10	+	3241	19	ISM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	-148	8836	1	2	5prime_fragment	FALSE	canonical	3	64	junction_16	12.9177120246047	37	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGCAGATGTATATATG	NA	False	NA	NA	False	NA	NA	NA	69761635	69851637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397
38155	chr4	-	2401	7	Antisense	novelGene_ENSMUSG00000039768.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAGCACTGCAATGGAAA	NA	False	NA	NA	False	NA	NA	NA	152060412	152037306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_152037371_152041557_152041660_152052953_152053083_152055311_152055387_152057935_152058116_152058210_152058301_152058651
38156	chr2	+	1671	4	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	229	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	754.542392594493	2	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCTTTCTTTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	143757468	143785241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780613_143781879_143781949_143784046
38158	chr3	+	1626	10	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	31	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	384.555732126191	11	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTATATAAAAGAGCATCA	NA	False	NA	NA	False	NA	NA	NA	97066123	97083822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079035_97081123_97081215_97082943_97083110_97083646
38159	chrX	+	2305	4	NNC	ENSMUSG00000045427.14	novel	2364	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	371.760675704142	8	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	133502006	133507809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133502083_133503440_133503512_133505603_133507048_133507095
38160	chr12	+	1215	6	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-23	-1689	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1794.15968074193	51	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908835	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78931580
38161	chr12	-	1260	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	171	-14	-171	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	3	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTAACTTATTAACCGGG	NA	False	NA	NA	False	NA	NA	NA	111638731	111635965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
38162	chr8	-	2020	1	Intergenic	novelGene_1664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTAACCTCCCTGAGCAC	NA	False	NA	NA	False	NA	NA	NA	73131110	73129090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_73129100_73131100
38163	chr8	-	2069	6	ISM	ENSMUSG00000006276.11	ENSMUST00000212121.2	2686	22	46412	4	-725	-4	3prime_fragment	FALSE	canonical	3	75	junction_1	78.1009603013945	8	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATACAAAACATGAGACTA	NA	False	NA	NA	False	NA	NA	NA	73128883	73094848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666
38164	chr2	+	2891	10	Antisense	novelGene_ENSMUSG00000027452.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGCAAAGCCACAAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	150460031	150480045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_150461716_150463436_150463553_150466718_150466785_150466910_150467036_150467683_150467812_150468131_150468246_150469196_150469290_150470413_150470550_150471663_150471814_150479766
38165	chr2	-	1938	12	NIC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-35	2	intron_retention	FALSE	canonical	3	980	junction_4	86.4216073379571	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCCTACTGTGATGGTT	NA	False	NA	NA	False	NA	NA	NA	5849787	5799473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
38167	chr5	+	1531	6	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	26	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	246.673873768585	1419	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	NA	False	NA	NA	False	NA	NA	NA	143389618	143407659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555_143407060_143407334
38168	chr3	+	2136	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	18	2	18	-2	multi-exon	FALSE	canonical	3	304	junction_1	72.6321455791344	234	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACGTCCTTTTGCTCAC	NA	False	NA	NA	False	NA	NA	NA	68401558	68533794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_68401703_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
38169	chr16	-	2550	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	96	-1	-27	1	multi-exon	FALSE	canonical	3	49	junction_7	25.2214680179325	74	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTACTGTGCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	22676321	22631968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
38170	chr16	-	3715	7	NNC	ENSMUSG00000050312.13	novel	3565	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	12.6326297077581	3	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	NA	NA	NA	62607151	62552806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_62555782_62589969_62590092_62591020_62591176_62592061_62592201_62596650_62596747_62606150_62606261_62607033
38171	chr3	-	3045	16	NNC	ENSMUSG00000028078.15	novel	4012	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	68.5161457046602	221	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGGGTGGGTGAAATT	NA	False	NA	NA	False	NA	NA	NA	86827686	86693459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813410_86827433
38172	chr11	-	2024	7	FSM	ENSMUSG00000018659.13	ENSMUST00000018803.12	1994	7	-37	7	-37	-7	multi-exon	FALSE	canonical	3	181	junction_4	10.434983894999	488	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATTAATGTTTAACTTG	NA	False	NA	NA	False	NA	NA	NA	96834849	96828657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556
38173	chr1	+	3141	5	NIC	ENSMUSG00000026435.16	novel	3212	5	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	12.3895116933639	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATATGTGTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	131890728	131910702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_131890791_131904455_131904851_131905192_131905937_131906485_131906752_131909028
38175	chr11	-	1607	4	ISM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	314	-1	314	0	3prime_fragment	FALSE	canonical	3	6267	junction_3	216.839930722078	2	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120238603	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461
38176	chr12	+	2707	20	NNC	ENSMUSG00000021144.15	novel	717	3	NA	NA	-2821	13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	157.733689798682	78	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCATAAAAAGGAAAACCCCA	6502	False	NA	NA	False	NA	NA	NA	113059076	113100806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_113059182_113075765_113075834_113080607_113080702_113083830_113083882_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
38178	chr5	-	4277	23	FSM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	82	1678	-2	0	multi-exon	FALSE	canonical	3	8	junction_2	7.69995170103989	26	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCCTTTGGCAGGTG	4493	False	NA	NA	False	NA	NA	NA	140688051	140649259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_140651249_140651762_140651964_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
38179	chrX	-	1978	11	NIC	ENSMUSG00000035232.9	novel	2115	12	NA	NA	26	3	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	155.054474298551	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTTGGTTTGAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	92875781	92808209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_92808862_92812494_92812635_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
38180	chr9	-	1830	11	NNC	ENSMUSG00000004099.17	novel	5870	39	NA	NA	-8	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	306.503197373208	1	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGTGATTGAGTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	20848493	20818500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823522_20847864_20847918_20848457
38182	chr10	-	364	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	13	167	13	-70	multi-exon	FALSE	canonical	3	12818	junction_1	2119	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGCTGCCAACGTGGGCT	NA	False	NA	NA	False	NA	NA	NA	75696061	75695353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75695378_75695520_75695694_75695894
38183	chrX	-	3621	5	Antisense	novelGene_ENSMUSG00000094004.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	163	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGCGACGGCTCCTGTA	NA	False	NA	NA	False	NA	NA	NA	134283956	134274066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_134274159_134274356_134274483_134278673_134278974_134280274_134280857_134281435
38184	chr19	-	1686	3	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-18	0	intron_retention	FALSE	canonical	3	3274	junction_2	290.5	24	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	NA	NA	NA	4092236	4090284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4090540_4090707_4091486_4091583
38188	chrX	-	2802	16	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	65	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.369651761134	1	109	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTAAAAATCCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	149800253	149766149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766913_149767586_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
38189	chr16	-	1268	18	ISM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	3280	65084	3092	44241	internal_fragment	FALSE	canonical	3	318	junction_15	24.4182131809045	2	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAAGTACAAATTGGTTA	NA	False	NA	NA	False	NA	NA	NA	13482754	13420907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684
38190	chr18	+	3016	3	Antisense	novelGene_ENSMUSG00000024592.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTGCGGCTTCCGCCCGC	NA	False	NA	NA	False	NA	NA	NA	57088099	57108426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_57090994_57106455_57106556_57108404
38191	chr4	-	2053	12	NNC	ENSMUSG00000028809.17	novel	3740	18	NA	NA	14	24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	457.3618564863	1	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAACACAAGAAGGATAA	3757	False	NA	NA	False	NA	NA	NA	135069815	135049762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065387_135067813_135067919_135068157_135068347_135069521
38192	chr12	+	1473	7	NNC	ENSMUSG00000021134.18	novel	1498	8	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	807.965294221643	5	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992307	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992447_80993349_80993513_80994239_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
38193	chr2	-	3975	26	NIC	ENSMUSG00000026792.17	novel	4030	26	NA	NA	-17	1	combination_of_known_splicesites	TRUE	canonical	1	3	junction_25	6.16389487256231	41	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTTGCATAGATTCTT	NA	False	NA	NA	False	NA	NA	NA	32851643	32815226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32816914_32817996_32818143_32818663_32818746_32819585_32819718_32822102_32822202_32823826_32823923_32825179_32825261_32826447_32826523_32828808_32828897_32830252_32830353_32831814_32831886_32834716_32834762_32835453_32835594_32835862_32835986_32836103_32836134_32837802_32837934_32841104_32841196_32843375_32843498_32844213_32844299_32845192_32845262_32846486_32846565_32847260_32847306_32848169_32848227_32849528_32849626_32851055_32851191_32851573
38194	chr17	+	3692	5	NIC	ENSMUSG00000025737.6	novel	3139	8	NA	NA	27	-31	intron_retention	FALSE	canonical	3	89	junction_2	17.6405073623181	1	116	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACTTTTTAACCCAATAA	NA	False	NA	NA	False	NA	NA	NA	26042649	26047664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26043661_26044627_26044806_26044925_26046968_26047127_26047313_26047388
38195	chr1	+	1985	17	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	5002	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	169.364333151198	1	57	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	5324	False	NA	NA	False	NA	NA	NA	72351587	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378193_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
38196	chr7	+	2806	7	NIC	ENSMUSG00000109378.2	novel	2890	11	NA	NA	572	-3	intron_retention	FALSE	canonical	1	1	junction_5	245.395202796541	2	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCAGTATCTGCCTGTC	179	False	NA	NA	False	NA	NA	NA	30263355	30267377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30263727_30263898_30264033_30264127_30264224_30264519_30265807_30266173_30266362_30266567_30266926_30267005
38199	chr15	+	2119	13	FSM	ENSMUSG00000022556.12	ENSMUST00000227478.2	2084	13	-33	-2	-10	2	multi-exon	FALSE	canonical	3	205	junction_11	40.4687808343941	384	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATACATACATATATA	7111	False	NA	NA	False	NA	NA	NA	76361611	76385174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
38200	chr3	+	1573	8	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	0	-9	intron_retention	FALSE	non_canonical	0	0	junction_7	1799.22883707528	66	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAACATTCATATGAACCA	NA	False	NA	NA	False	NA	NA	NA	121220145	121251839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730_121251297_121251755
38201	chr2	-	1212	8	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	52	-936	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4686.11925079303	20	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGATTCCTGGGCTGTGGC	3684	False	NA	NA	False	NA	NA	NA	154734803	154714273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726286_154730251_154730281_154734609
38202	chr16	-	1418	12	NNC	ENSMUSG00000025613.14	novel	1567	14	NA	NA	105	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1437.13145185726	1	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87288231	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287375_87287554_87288189
38203	chr6	+	3199	11	NNC	ENSMUSG00000030213.13	novel	8059	15	NA	NA	-1	8845	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	62.7169036225482	14	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCCGAACAATGATTCTT	7091	False	NA	NA	False	NA	NA	NA	136495842	136573511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_136495962_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573408
38205	chr7	+	2732	5	Intergenic	novelGene_2915	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTGATAAAGCAAGCCTA	8314	False	NA	NA	False	NA	NA	NA	29543360	29553041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_29545674_29545893_29545989_29546257_29546386_29550366_29550443_29552921
38207	chr17	+	2002	4	NNC	ENSMUSG00000060149.8	novel	1598	4	NA	NA	28	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.9967317119759	3	78	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCAAGTGGCCTACTCGT	NA	False	NA	NA	False	NA	NA	NA	17171841	17194421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17171921_17191161_17191289_17191432_17191494_17192686
38208	chr14	+	2833	12	NIC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	1	0	intron_retention	FALSE	canonical	3	48	junction_6	39.4031923865051	7	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	52122392	52129325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52122762_52122844_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
38209	chr3	-	2864	3	FSM	ENSMUSG00000034317.15	ENSMUST00000136512.3	1553	3	238	-1549	238	0	multi-exon	FALSE	canonical	3	60	junction_2	267.5	399	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGACATAGTTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	68951810	68942620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_68945342_68951100_68951176_68951742
38210	chr11	-	1923	14	NNC	ENSMUSG00000018697.15	novel	1822	13	NA	NA	-2	-39	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_2	181.946510118712	27	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCACCTGCTGCCTCCAA	NA	False	NA	NA	False	NA	NA	NA	84404350	84313747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_84313846_84326559_84326726_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
38212	chr12	+	2436	19	Antisense	novelGene_ENSMUSG00000020964.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	9	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCTTCGCCCCTTCCC	NA	False	NA	NA	False	NA	NA	NA	91780319	91815911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_91780777_91781390_91781467_91781746_91781916_91782541_91782689_91782994_91783085_91784055_91784121_91784993_91785070_91786812_91786887_91790309_91790363_91791591_91791749_91792070_91792155_91793279_91793341_91793427_91793485_91797462_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810040_91815733
38213	chr12	+	2784	7	ISM	ENSMUSG00000040877.17	ENSMUST00000047115.9	4356	8	2574	0	2574	0	3prime_fragment	FALSE	canonical	3	8	junction_1	21.3203085239298	149	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	7469	False	NA	NA	False	NA	NA	NA	108862816	108994378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_108862986_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
38214	chr18	+	2178	3	FSM	ENSMUSG00000102543.6	ENSMUST00000192875.2	5777	3	5308	-1709	5308	0	multi-exon	FALSE	canonical	3	212	junction_1	9.5	27	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	2325	False	NA	NA	False	NA	NA	NA	37958014	37974926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_37958133_37966317_37966407_37972955
38215	chr3	-	1799	14	NIC	ENSMUSG00000028107.15	novel	2157	16	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	1	19	junction_7	207.375113911536	1	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662183	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95662069
38217	chr10	+	2097	7	FSM	ENSMUSG00000113949.2	ENSMUST00000180350.3	1271	7	-5	-821	-5	1	multi-exon	FALSE	canonical	3	35	junction_1	236.742945453972	27	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	80438785	80451618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80439148_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
38218	chr3	+	1937	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	104	8	56	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	1	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	121220249	121251848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
38219	chr16	-	1795	11	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-17894	12179	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGGGGGAGAGACTCAG	NA	False	NA	NA	False	NA	NA	NA	38411556	38377505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38377590_38384472_38384668_38393409_38393639_38396105_38396187_38399003_38399054_38402327_38402487_38405535_38405879_38405978_38406041_38406580_38406771_38408544_38408662_38411271
38220	chr5	-	2123	13	NNC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	-1298	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	229.628489207144	2	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTGTTAATTTAAGTTAC	6868	False	NA	NA	False	NA	NA	NA	123884930	123866782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123867420_123868517_123868608_123869099_123869336_123871618_123871699_123873884_123873960_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123884834
38222	chr8	-	1580	8	FSM	ENSMUSG00000031711.8	ENSMUST00000211462.2	761	8	-44	-775	2	-2	multi-exon	FALSE	canonical	2	30	junction_6	164.077259054311	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTACTTTTGGTACTGAG	NA	False	NA	NA	False	NA	NA	NA	83500787	83490251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83499508_83499641_83500685
38223	chr4	-	1918	4	NNC	ENSMUSG00000035201.16	novel	1976	4	NA	NA	-29791	4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	1.69967317119759	51	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTACTCTTTACTTCTC	NA	False	NA	NA	False	NA	NA	NA	101731011	101692161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101693139_101694021_101694595_101695022_101695337_101730957
38224	chr5	+	2699	1	Genic_Genomic	ENSMUSG00000006638.16	novel	NA	NA	NA	NA	3562	1275	mono-exon	FALSE	NA	NA	NA	NA	NA	4	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATACAACAGAGGATTCA	2687	False	NA	NA	False	NA	NA	NA	31111011	31113710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_31111000_31113700
38225	chr12	+	2111	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	39	43	39	-43	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	1	127	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCATACAAGTATTAAATG	NA	False	NA	NA	False	NA	NA	NA	24758278	24764102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
38226	chr2	+	1504	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	97	95	44	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	1	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGCCTACAAAAGTGGTC	NA	False	NA	NA	False	NA	NA	NA	31360313	31410587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
38227	chr5	-	2961	6	Antisense	novelGene_ENSMUSG00000106665.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCTGAATTCTAGTCAG	8164	False	NA	NA	False	NA	NA	NA	24365786	24342543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_24343477_24346146_24346290_24354120_24354362_24361885_24362090_24363536_24363633_24364442
38228	chr11	+	1947	3	Antisense	novelGene_ENSMUSG00000007646.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGAAACCCAAACCCCGC	NA	False	NA	NA	False	NA	NA	NA	87288299	87295323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_87288586_87292215_87293683_87295129
38229	chr12	+	1548	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	56	1086	20	-1086	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACGGATTACCTTGTGCAG	3401	False	NA	NA	False	NA	NA	NA	83734981	83780783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
38231	chr7	+	2555	21	ISM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	-4	16533	-4	-4851	5prime_fragment	FALSE	canonical	3	207	junction_17	29.5584167370311	8	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCAAGCTCTTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	35285664	35322118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729
38232	chr11	+	1398	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-33	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGACAGTCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653920_120654114
38233	chr13	-	1779	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000113450.2	novel	633	4	NA	NA	2	392	multi-exon	FALSE	canonical	1	2	junction_3	54.6355195820448	12	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTTCACAGTCCATTAA	9514	False	NA	NA	False	NA	NA	NA	62614644	62549914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62551194_62555228_62555290_62555482_62555610_62604500_62604562_62604746_62604874_62614520
38234	chr8	+	3247	16	FSM	ENSMUSG00000061048.9	ENSMUST00000080797.8	4384	16	-33	1170	-33	-1170	multi-exon	FALSE	canonical	3	35	junction_1	6.02218122167265	84	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTAGGGGAGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	107237489	107282759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107237639_107237855_107237974_107262039_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
38235	chr11	+	1026	8	NNC	ENSMUSG00000020372.16	novel	1447	8	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2301.09798104456	21	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCTTTCTGAAACTG	NA	False	NA	NA	False	NA	NA	NA	48691186	48696898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_48691400_48692489_48692604_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
38236	chr10	+	1653	3	NIC	ENSMUSG00000074781.6	novel	3867	4	NA	NA	-12	279	intron_retention	FALSE	canonical	3	1883	junction_2	187	37	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTGATCCTTGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	95351034	95379147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_95351100_95377066_95377641_95378133
38239	chr5	-	3137	18	FSM	ENSMUSG00000006641.13	ENSMUST00000114668.7	3436	18	299	0	-184	0	multi-exon	FALSE	canonical	3	19	junction_17	28.8754634169437	162	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	549	False	NA	NA	False	NA	NA	NA	31205607	31193379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205515
38240	chr10	-	2435	5	Antisense	novelGene_ENSMUSG00000006732.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGGAGAGCCGAGCTCGC	NA	False	NA	NA	False	NA	NA	NA	126882758	126877835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_126877940_126878928_126879093_126880333_126880521_126880622_126880738_126880893
38243	chrX	-	2233	5	NNC	ENSMUSG00000039201.11	novel	2184	5	NA	NA	8308	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	65.4064217030713	143	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAAGGTCACTGTGGTA	5190	False	NA	NA	False	NA	NA	NA	8033822	8020728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_8022306_8022554_8022744_8022889_8023018_8033429_8033628_8033681
38244	chr2	-	3025	18	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-80	38209	-8	-38209	5prime_fragment	FALSE	canonical	0	0	junction_2	143.926884552143	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGACCATGCAAGGTAGTA	NA	False	NA	NA	False	NA	NA	NA	60213655	60162312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_60162839_60163268_60163305_60164793_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
38245	chr8	-	1910	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	124	739	-14	-275	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	17	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAACCCACAAACTCAT	7625	False	NA	NA	False	NA	NA	NA	41827686	41793972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
38246	chrX	+	1173	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	57	10	54	-10	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCAGTTTTGTTCG	NA	False	NA	NA	False	NA	NA	NA	36059360	36062450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
38247	chr11	-	2948	2	NNC	ENSMUSG00000041598.8	novel	3008	2	NA	NA	-437	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	164	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTCTGACTCTTC	6926	False	NA	NA	False	NA	NA	NA	113643144	113617677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113620492_113643010
38248	chr12	+	1830	14	NNC	ENSMUSG00000059669.9	novel	1840	14	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	70.1136862109163	20	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	NA	False	NA	NA	NA	24548612	24608538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24548649_24550434_24550534_24554945_24555008_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
38249	chr5	-	2230	11	NNC	ENSMUSG00000029422.16	novel	2270	11	NA	NA	-3	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	205.954363877049	2	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCCTTATAACAAGTCCA	4343	False	NA	NA	False	NA	NA	NA	123887455	123866503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123867420_123868517_123868621_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123887351
38251	chr18	+	2373	15	NNC	ENSMUSG00000003779.17	novel	3107	19	NA	NA	-1286	0	intron_retention	FALSE	non_canonical	0	0	junction_6	438.793615193628	1	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	1135	False	NA	NA	False	NA	NA	NA	34760689	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34761993_34762193_34762338_34762484_34762640_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
38253	chrX	-	3682	5	Antisense	novelGene_ENSMUSG00000054994.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	163	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGCACCATAGTCATAAT	NA	False	NA	NA	False	NA	NA	NA	134405506	134395391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_134395468_134395665_134395785_134400015_134400180_134401607_134402204_134402779
38254	chr11	+	2045	2	NNC	ENSMUSG00000059552.14	novel	3275	5	NA	NA	7	-6827	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	0	17	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGTAACCTCCTGGGAA	NA	False	NA	NA	False	NA	NA	NA	69471237	69473820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69471879
38255	chr3	-	2667	12	NNC	ENSMUSG00000005813.13	novel	2686	11	NA	NA	-31	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	142.776656193227	979	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCTAGTTGTATTTGT	NA	False	NA	NA	False	NA	NA	NA	138195190	138164711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184130_138184189_138184626_138184692_138186448_138186562_138188827_138188880_138195018
38256	chr1	-	3563	19	NNC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	51	-64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	45.158021586206	1	169	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTGATATTCTATAATG	NA	False	NA	NA	False	NA	NA	NA	151304136	151243513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273206_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
38257	chr1	-	3173	8	NNC	ENSMUSG00000026705.17	novel	4072	12	NA	NA	-5025	0	intron_retention	FALSE	non_canonical	0	0	junction_7	29.8704686598517	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAATGTTTTAATTTTT	NA	False	NA	NA	False	NA	NA	NA	160936951	160915967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160925967_160926711_160926856_160929020_160929205_160930548_160930670_160936791
38260	chr6	-	2068	17	NNC	ENSMUSG00000030061.17	novel	2465	17	NA	NA	1997	54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	228.190290314356	2	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATGTTTACCAGTT	NA	False	NA	NA	False	NA	NA	NA	97180523	97160913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97161345_97161434_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180398
38261	chr1	+	1166	6	Antisense	novelGene_ENSMUSG00000064823.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGCCTGCCCAGTAATC	NA	False	NA	NA	False	NA	NA	NA	86283804	86287096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86283915_86284091_86284180_86284277_86284464_86284678_86285173_86285826_86285945_86286926
38262	chr17	+	2011	5	Intergenic	novelGene_50	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	98.7253133699762	1	76	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCCCAAGTATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	17399610	17426649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17422956_17423084_17423325_17423387_17424679_17425100_17425349
38263	chr7	+	1850	11	NIC	ENSMUSG00000030802.15	novel	3405	12	NA	NA	-6	-3	intron_retention	FALSE	canonical	3	550	junction_8	39.8121840646805	903	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCTTGGGCCCCAAATG	NA	False	NA	NA	False	NA	NA	NA	127503268	127507777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
38264	chr11	+	1236	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	93	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAAATATATCATGCCTC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655662_75656204
38266	chr5	+	2236	10	NNC	ENSMUSG00000036817.15	novel	2454	19	NA	NA	1103	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	289.621379062176	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTTTAAAAGTGCATG	4678	False	NA	NA	False	NA	NA	NA	139222434	139235534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172_139235290_139235344
38267	chr15	+	2012	6	ISM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	4986	17	54	-17	3prime_fragment	FALSE	canonical	3	290	junction_2	25.4369809529354	117	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACATTTGATAAGATTA	NA	False	NA	NA	False	NA	NA	NA	100130685	100159108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
38268	chr8	+	3436	10	NNC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	22	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	124.495227733416	1	110	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATTATCAGTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	117649087	117668238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_117649185_117652827_117653002_117655274_117655321_117657816_117657877_117658332_117660203_117661433_117661536_117662932_117662991_117663776_117664014_117667182_117667310_117667573
38269	chr1	+	1210	1	ISM	ENSMUSG00000026074.16	ENSMUST00000168431.7	5632	30	124172	16	1875	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	86	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATAATTTGCTTCATGGC	4895	False	NA	NA	False	NA	NA	NA	40064244	40065454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_40064200_40065500
38270	chr15	-	4963	27	Intergenic	novelGene_3277	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	67	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGCGGCTCGGGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	39545498	39061706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_39061934_39155496_39155706_39208703_39209015_39300390_39301319_39305551_39305610_39315435_39315503_39317754_39317874_39320071_39320172_39321155_39321283_39322983_39323032_39325893_39326007_39335729_39335859_39339773_39339946_39341950_39342107_39370361_39370428_39373035_39373196_39374657_39374766_39398230_39398412_39399265_39399378_39430338_39430438_39448983_39449157_39479662_39479905_39538333_39538478_39542643_39542756_39543022_39543126_39544382_39544523_39544939
38271	chr10	-	2186	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-14	-7	intron_retention	FALSE	canonical	3	380	junction_3	53.1859943970215	30	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACTGAAAGCATTTGTAG	NA	False	NA	NA	False	NA	NA	NA	88520891	88511140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_88511933_88513361_88514499_88515720_88515818_88516340_88516437_88520827
38272	chr14	+	949	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	79	-692	79	692	mono-exon	FALSE	NA	NA	NA	NA	NA	3	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATATTT	NA	False	NA	NA	False	NA	NA	NA	13669516	13670465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669500_13670500
38273	chrX	-	3069	21	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_19	15.6232999075099	101	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGTGTTTATATGTAT	NA	False	NA	NA	False	NA	NA	NA	134985984	134972848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982182_134985845
38274	chr2	-	2716	10	NNC	ENSMUSG00000037376.15	novel	2828	11	NA	NA	28	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	122.176658173602	1	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCATAAGTCATTAATGATA	NA	False	NA	NA	False	NA	NA	NA	132657905	132646133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132647533_132648630_132648718_132648816_132648905_132650515_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
38275	chr4	+	2500	9	NNC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.4255996272056	223	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTTATTGTTACAAAAG	11	True	NA	NA	False	NA	NA	NA	44756588	44932215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44756693_44761849_44762479_44893530_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
38276	chr2	-	1740	5	NIC	ENSMUSG00000026958.14	novel	3017	8	NA	NA	0	193	intron_retention	FALSE	canonical	3	252	junction_2	21.4592637338749	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGGGCCAGAGGATC	9007	False	NA	NA	False	NA	NA	NA	25246365	25244286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25244647_25244752_25244835_25244904_25245966_25246040_25246155_25246242
38277	chr18	+	1940	10	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	454.329488312851	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	68433435	68454978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440868_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452295_68453296_68453331_68454388
38278	chr11	-	2462	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	161	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGTATGTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	100661783	100656857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
38279	chr8	-	1259	10	Antisense	novelGene_ENSMUSG00000055681.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4060	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTCACATTCCTCCGCCA	1022	False	NA	NA	False	NA	NA	NA	70765640	70755213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70755581_70757281_70757345_70758282_70758384_70759146_70759300_70760597_70760653_70761143_70761225_70762983_70763140_70764275_70764352_70765358_70765429_70765503
38281	chr13	+	3900	5	FSM	ENSMUSG00000021319.8	ENSMUST00000222464.2	4049	5	-22	171	-22	-2	multi-exon	FALSE	canonical	3	8	junction_1	1.80277563773199	47	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCTTCATGTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	19807251	19816993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_19808048_19809197_19809279_19809363_19809430_19811275_19811475_19814235
38283	chrX	-	2314	11	Antisense	novelGene_ENSMUSG00000031360.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATAGCACAGGCAGCTCC	NA	False	NA	NA	False	NA	NA	NA	161720775	161684630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_161684742_161686427_161686634_161693003_161693174_161696201_161696303_161704192_161704310_161704443_161704527_161705383_161705464_161710397_161710550_161714619_161714755_161717281_161717372_161719706
38284	chr2	+	2170	4	FSM	ENSMUSG00000026960.7	ENSMUST00000155517.2	582	4	60	-1648	60	-38	multi-exon	FALSE	canonical	3	23	junction_1	228.30583776057	22	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATTATCACCCCAATTA	NA	False	NA	NA	False	NA	NA	NA	53081797	53109194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_53081893_53084295_53084350_53092930_53093064_53107306
38285	chr6	-	3338	25	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	54	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	157.30803446847	1	153	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3547	False	NA	NA	False	NA	NA	NA	125168512	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145132_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161023_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
38286	chrX	+	1293	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-58	-25	58	mono-exon	FALSE	NA	NA	NA	NA	NA	3	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
38287	chr3	+	1099	1	Antisense	novelGene_ENSMUSG00000028187.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGCAAATGACTCAAAATAA	NA	False	NA	NA	False	NA	NA	NA	146212854	146213953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_146212900_146214000
38290	chr19	-	1101	4	Antisense	novelGene_ENSMUSG00000024735.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAGAGAAGGCCCAGTAC	NA	False	NA	NA	False	NA	NA	NA	10882890	10880084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10880411_10880648_10880824_10880999_10881105_10882395
38293	chr14	-	1663	13	NNC	ENSMUSG00000021814.18	novel	2727	13	NA	NA	33	361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	334.591500522984	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8236	False	NA	NA	False	NA	NA	NA	20529943	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510469_20512676_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
38295	chr7	+	2649	13	NNC	ENSMUSG00000038943.17	novel	3026	14	NA	NA	36	-159	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	284.18773137957	1	149	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCATCACTACTCTTCC	NA	False	NA	NA	False	NA	NA	NA	79944296	79965840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962142_79964861
38296	chr2	+	1682	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	229	0	229	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143757468	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
38297	chr11	-	3092	16	NNC	ENSMUSG00000076435.4	novel	3154	16	NA	NA	20	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	17.2544358225807	106	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCTGATTGGACTGTAA	7305	False	NA	NA	False	NA	NA	NA	94492677	94447930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94449184_94449465_94449535_94449690_94449802_94450288_94450431_94452065_94452218_94453636_94453745_94460135_94460213_94460766_94460859_94461128_94461287_94461439_94461536_94462096_94462263_94462387_94462468_94463051_94463106_94463347_94463477_94463858_94464055_94492468
38298	chr7	+	2463	3	Genic_Genomic	ENSMUSG00000077886.3_ENSMUSG00000077815.3_ENSMUSG00000077903.3	novel	84	1	NA	NA	-787	174	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGCTTTCTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	3266512	3269689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_3266594_3267223_3268627_3268710
38299	chr4	+	1700	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	42.7719534274506	3	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147596801_147597378_147597462_147597596_147597930_147598250_147600045
38302	chr4	-	3821	9	NNC	ENSMUSG00000041261.10	novel	3853	9	NA	NA	0	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11.0559655842446	233	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTCCATCAATAAAACTTTA	-1	True	NA	NA	False	NA	NA	NA	8239041	8143397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_8146217_8169591_8169766_8183252_8183366_8184583_8184633_8185575_8185639_8189296_8189393_8221549_8221675_8237918_8238111_8238851
38303	chr17	+	843	2	NIC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	10244	-10	intron_retention	FALSE	canonical	3	2637	junction_1	0	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATGACCATTTTTCC	NA	False	NA	NA	False	NA	NA	NA	88297374	88298310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_88298059_88298151
38304	chr3	+	1972	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	-2	0	-2	0	multi-exon	FALSE	canonical	3	150	junction_1	0	263	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4367	False	NA	NA	False	NA	NA	NA	79536383	79540127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_79536664_79538435
38305	chr7	-	2206	15	NNC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	34	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	426.652854394841	1	93	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAGTTGTGAAACACAA	NA	False	NA	NA	False	NA	NA	NA	143102795	143067340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143072586_143072623_143074120_143074180_143077877_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089468_143089634_143089777_143091953_143092058_143093933_143093984_143095484_143095516_143102778
38306	chr3	+	1755	1	ISM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	7842	33	7139	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	4	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAAACTGGAAGTTCT	NA	False	NA	NA	False	NA	NA	NA	102973442	102975197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_102973400_102975200
38307	chr17	+	1793	6	ISM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	13	0	-1	0	intron_retention	FALSE	canonical	3	984	junction_4	76.8754837383154	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	NA	False	NA	NA	NA	46957167	46961058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960
38308	chr15	+	1624	4	ISM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	13192	0	13192	0	3prime_fragment	FALSE	canonical	3	576	junction_1	61.8834029086601	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	85757338	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_85758078_85759175_85759420_85759736_85759953_85760349
38309	chr18	+	2749	4	NNC	ENSMUSG00000057561.11	novel	1905	4	NA	NA	2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	761.070007000378	1	130	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAATATCTAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	46730823	46743269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46730868_46731707_46731768_46740570_46742512_46742565
38310	chrX	-	420	2	Genic_Genomic	ENSMUSG00000048709.7	novel	292	1	NA	NA	-100	736	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTCGGTACATGTAATA	NA	False	NA	NA	False	NA	NA	NA	74519229	74518101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_74518163_74518870
38311	chr12	-	1918	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	4	6	2	-6	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	503	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGAATTCTTAAGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	17050115	17038654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
38312	chr3	+	3362	21	NNC	ENSMUSG00000034349.15	novel	4316	24	NA	NA	-12	-162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	327.309624056489	1	148	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAACATATAATAGTACAA	NA	False	NA	NA	False	NA	NA	NA	68912290	68941789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_68912424_68913408_68913547_68923413_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928726_68929558_68929793_68931515_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935936_68936743_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
38313	chrX	+	1458	5	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	79	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	804.895490110362	2	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTGTTGCCTGACAAT	NA	False	NA	NA	False	NA	NA	NA	74558001	74578539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560820_74564968_74565040_74574626_74574830_74577513
38314	chr11	-	4536	10	FSM	ENSMUSG00000057181.16	ENSMUST00000103225.11	4554	10	19	-1	0	0	multi-exon	FALSE	canonical	2	53	junction_6	17.0105268787113	216	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGGCTTAAATAGTGTT	NA	False	NA	NA	False	NA	NA	NA	80268841	80251317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156_80261277_80264465_80264524_80264899_80265044_80266332_80266459_80267628_80267710_80268667
38316	chr14	-	1484	2	Genic_Genomic	ENSMUSG00000057886.6	novel	552	1	NA	NA	-75	1083	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74193066	74191356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_74192344_74192569
38318	chr18	-	2089	14	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-3	0	intron_retention	FALSE	canonical	3	155	junction_13	20.7081723569914	360	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2798	False	NA	NA	False	NA	NA	NA	34884580	34866045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884265_34884366
38319	chr11	-	5330	16	NNC	ENSMUSG00000034354.18	novel	5466	17	NA	NA	501	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	70.4072597266945	112	64	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTCCGCACGGTGGC	NA	False	NA	NA	False	NA	NA	NA	4477905	4430892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4432940_4435362_4435452_4435878_4435990_4437233_4438633_4439621_4439768_4440977_4441149_4441806_4441993_4442718_4442915_4447337_4447450_4447930_4448063_4448887_4449094_4454031_4454146_4457589_4457687_4467740_4467908_4470831_4470915_4477831
38320	chr11	-	1692	3	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	-2	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	487	49	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAACCATCACTGATG	6393	False	NA	NA	False	NA	NA	NA	102076085	102053336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054771_102073736_102073818_102075908
38321	chr7	-	1475	9	NNC	ENSMUSG00000030697.8	novel	1359	9	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	858.12568281109	461	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAGGTTCTGTCAGGTT	5042	False	NA	NA	False	NA	NA	NA	126391696	126385039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388105_126388248_126391232_126391396_126391594
38324	chr2	-	1118	7	FSM	ENSMUSG00000002109.15	ENSMUST00000152277.8	2297	7	1172	7	1172	-7	multi-exon	FALSE	canonical	3	12	junction_6	33.2214789957742	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAAAGCCCAACAGGGTT	5820	False	NA	NA	False	NA	NA	NA	91064504	91041923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91064452
38325	chr7	-	1699	5	NNC	ENSMUSG00000090862.4	novel	1317	5	NA	NA	-15	-5	intron_retention	FALSE	canonical	0	0	junction_1	4566.5944915221	115	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAACTTGGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	115933385	115930751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_115931441_115931517_115932334_115932930_115933010_115933134_115933184_115933319
38326	chr19	-	1917	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-43	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.93458700951	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCATCTAAGCCATTCA	NA	False	NA	NA	False	NA	NA	NA	15902337	15882505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883000_15883149_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
38327	chr15	-	1543	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	390	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	1	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056403	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038048_83038535_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
38328	chr7	-	2212	6	FSM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	67	4494	4	472	multi-exon	FALSE	canonical	3	85	junction_5	3.61109401705356	268	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATTACGTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	130964421	130944442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
38329	chrX	-	2507	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	61	-43	-2	43	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	1232	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTAAAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	74174561	74153295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
38330	chr7	-	1740	10	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	834	-617	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_9	633.044671058493	23	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAATTGGGGTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	59654025	59632866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59653517
38331	chr13	+	1465	10	NNC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	82.812297053094	6	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	NA	False	NA	NA	NA	43519180	43548679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_43519217_43521870_43521941_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
38332	chr14	+	2845	7	NIC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-1	-11	intron_retention	FALSE	canonical	3	1151	junction_1	39.6988664825584	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTAATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	8348828	8357578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8357238_8357376
38333	chr2	+	2636	20	NNC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	162.446206736576	8	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	NA	NA	NA	144398199	144432669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_144398263_144401126_144401243_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
38334	chr11	-	2061	5	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	12	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	419.463049624159	2	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCATCACTGATGTCTC	6435	False	NA	NA	False	NA	NA	NA	102076043	102053332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054981_102056278_102056313_102057912_102058023_102073683_102073818_102075908
38335	chrX	+	2948	2	ISM	ENSMUSG00000002014.13	ENSMUST00000141721.2	2568	3	-161	10	-5	5	intron_retention	FALSE	canonical	3	1656	junction_1	0	19	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACATTCAAGACACGGGGC	5427	False	NA	NA	False	NA	NA	NA	72830628	72834422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_72832560_72833405
38336	chr2	-	2772	13	NNC	ENSMUSG00000039536.17	novel	3569	12	NA	NA	19	1	intron_retention	FALSE	non_canonical	0	0	junction_1	82.2054928551344	4	96	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTGTTAATTTATTT	NA	False	NA	NA	False	NA	NA	NA	166838166	166790191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166790746_166790787_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
38339	chr7	+	4408	4	NNC	ENSMUSG00000057093.15	novel	4612	6	NA	NA	196	-14	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	24.7116706571342	7	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTGGCTAAAACTGTGT	NA	False	NA	NA	False	NA	NA	NA	27392122	27405895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27392214_27392906_27393034_27398077_27398177_27401804
38340	chr13	-	1611	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	94	477	94	-477	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAACGGTGTCCTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314243	34311207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
38341	chr15	-	1646	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	49	617	0	-22	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	61	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTATATCCTTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	75781155	75766670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
38342	chr11	-	2996	1	Antisense	novelGene_ENSMUSG00000020492.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTCGCGGATGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	87006911	87003915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_87003900_87006900
38343	chr4	+	3424	12	NNC	ENSMUSG00000042608.16	novel	3492	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.66830726373	246	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTGTAGCCTGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	125997763	126034822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125997808_125997876_125997940_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602
38344	chrX	+	2332	11	ISM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	-14	94729	13	1046	5prime_fragment	FALSE	canonical	2	133	junction_1	30.9451126997463	6	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTATGTGCTAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	161684613	161720775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706
38345	chr2	+	2067	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	9	-6	9	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	1302	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCATTTTTTTTAGAAGT	NA	False	NA	NA	False	NA	NA	NA	109848170	109875667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
38346	chr19	+	2466	12	FSM	ENSMUSG00000024891.7	ENSMUST00000236152.2	2619	12	146	7	-65	1	multi-exon	FALSE	canonical	3	72	junction_1	10.4311992290135	329	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACGGATTCCTGGAGTGTT	4204	False	NA	NA	False	NA	NA	NA	5074033	5081993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
38347	chr13	-	1235	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	31	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	236	18	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTAACGGTGTCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	34314306	34311210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312190_34313228_34313338_34314159
38348	chr11	+	2376	17	Antisense	novelGene_ENSMUSG00000020516.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCGCCATCACCGGCTGC	NA	False	NA	NA	False	NA	NA	NA	86392945	86435563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_86393789_86395091_86395208_86397619_86397725_86402414_86402492_86402649_86402714_86403631_86403740_86404125_86404216_86404371_86404462_86406914_86407018_86408175_86408218_86408407_86408469_86410716_86410865_86423596_86423669_86424852_86424973_86426236_86426289_86434757_86434871_86435391
38349	chr11	-	3241	5	NNC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	94	-126	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	325.625551822949	1	173	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTCTTCCTAAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	40646044	40639504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40641874_40642087_40642234_40642930_40643179_40644634_40644896_40645827
38350	chr2	-	3027	15	FSM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	203	0	138	0	multi-exon	FALSE	canonical	3	258	junction_7	28.5093074669466	197	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGTGTGACTCTTTT	3421	False	NA	NA	False	NA	NA	NA	25498330	25473029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25474001_25474114_25474174_25474787_25474957_25475319_25475549_25475635_25475846_25476879_25477031_25477286_25477640_25478620_25478725_25482309_25482416_25482778_25482920_25486444_25486537_25488156_25488210_25491362_25491411_25492432_25492568_25498124
38351	chr4	-	1679	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-54	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	364.499725084638	1	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGCTGGTGGGTTT	2559	False	NA	NA	False	NA	NA	NA	129229096	129203308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215810_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
38353	chr8	+	4801	5	NNC	ENSMUSG00000091514.3	novel	2322	2	NA	NA	10064	15512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	241	16	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCGCAGGCGCCTGCGGG	NA	False	NA	NA	False	NA	NA	NA	26254571	26275244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_26258442_26259314_26259565_26261106_26261368_26267454_26267552_26274921
38355	chrX	-	2415	11	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	15	380	combination_of_known_splicesites	FALSE	canonical	3	11	junction_8	95.1716344295925	1	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGTACCCAAAGCTAAGC	NA	False	NA	NA	False	NA	NA	NA	104972168	104919733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104954179_104954250_104955075_104955261_104972093
38356	chr10	-	3579	26	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2483	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	482.790130802194	1	140	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTCTTTTCCGGAGTTA	9368	False	NA	NA	False	NA	NA	NA	121464720	121425524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429578_121429629_121432088_121432161_121435491_121435540_121436696_121436819_121437160_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447459_121447578_121447618_121449127_121449297_121449391_121449574_121450914_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
38357	chr5	-	2141	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	39	776	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	1	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAACAGCTTCTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	74226370	74161683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
38358	chr2	+	1853	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	143	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	742.209411150249	1	66	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116554	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118764_130118907_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
38360	chr16	-	3156	11	Antisense	novelGene_ENSMUSG00000005262.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGCTTCTTTTCCTGAAC	NA	False	NA	NA	False	NA	NA	NA	18648110	18631145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18631167_18633578_18633685_18634076_18634112_18636652_18636774_18639787_18639920_18641972_18642044_18643735_18643807_18644502_18644569_18645004_18645855_18646383_18647849_18647892
38362	chr4	+	1824	6	NNC	ENSMUSG00000028779.17	novel	1551	5	NA	NA	520	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	92.1767866656242	1255	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCATGTTTTCCACCATG	4800	False	NA	NA	False	NA	NA	NA	129996870	130021910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129997068_130001255_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
38363	chr5	-	2298	8	NIC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	234	junction_6	22.518926280272	363	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGCAGTCCTCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	31117606	31112385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116757_31117314
38364	chr17	-	1589	4	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	-303	-13	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	714.950969569864	10	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTGGTTGAAATCACTGT	9386	False	NA	NA	False	NA	NA	NA	29483463	29469818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29470700_29471223_29471293_29480710_29480866_29482979
38365	chr15	-	1333	9	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-24	-696	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1991.16341227309	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCCTGGCAGTCAGCCAA	NA	False	NA	NA	False	NA	NA	NA	31601910	31592823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31592930_31593023_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
38366	chr15	-	2015	15	NIC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_14	227.949611779016	1365	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	99149801	99140697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149602
38367	chr12	+	1867	14	NIC	ENSMUSG00000059669.9	novel	2209	15	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	1	10	junction_7	69.4833001093273	192	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	NA	False	NA	NA	NA	24548599	24608538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
38368	chr11	-	3618	13	NNC	ENSMUSG00000018412.17	novel	5510	14	NA	NA	-655	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	71.5779974728423	4	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTCAGGCTTTTCT	7514	False	NA	NA	False	NA	NA	NA	104333772	104224328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_104226032_104226272_104226526_104227046_104227160_104227374_104227433_104228951_104229074_104233188_104233338_104234316_104234500_104241312_104241479_104247509_104247703_104248306_104248423_104259505_104259605_104269510_104269653_104333451
38369	chr11	+	2654	16	Antisense	novelGene_ENSMUSG00000020330.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	117	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAGGAAAAACAAAACAGC	NA	False	NA	NA	False	NA	NA	NA	40593322	40620048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_40593681_40594605_40594765_40596719_40596903_40598184_40598279_40598397_40598544_40598840_40598989_40600734_40601104_40604802_40605016_40605533_40605689_40606069_40606246_40606721_40606771_40612465_40612567_40612656_40612744_40614224_40614415_40619207_40619334_40619948
38370	chr2	-	1823	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	24	942	4	-942	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	482	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACATTAAAGAACATGTAAA	NA	False	NA	NA	False	NA	NA	NA	154445604	154428619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
38371	chr15	-	3841	22	NNC	ENSMUSG00000047921.18	novel	4048	22	NA	NA	53	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	45.8683416083987	1	127	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTGTTGATTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	72932841	72461469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_72462012_72462464_72462689_72557131_72557222_72565351_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808981_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72922443_72922573_72924010_72924157_72929770_72930364_72932809
38372	chr16	-	3684	21	NNC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	170	-9	intron_retention	FALSE	canonical	3	33	junction_14	52.9054817575646	4	68	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGAACACTTGTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	20534691	20521722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530887_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
38373	chr2	-	1527	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-30	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.273512661999	98	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGTTTGGGGAT	NA	False	NA	NA	False	NA	NA	NA	73044707	72923542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72923903_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
38374	chr9	+	1664	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	94	4	-26	-3	multi-exon	TRUE	canonical	3	245	junction_2	23.8777880116768	417	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTGCTTGTCATTTCC	7822	False	NA	NA	False	NA	NA	NA	119170453	119179361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
38375	chr11	-	1539	5	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACTTCCGCCTGCGCACG	NA	False	NA	NA	False	NA	NA	NA	75656399	75623741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642797_75647669_75647844_75650109_75650253_75655443
38377	chr13	-	1695	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	7	2	7	-2	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	887	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCGGGTTGTGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	99481206	99456156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
38378	chr2	-	2330	7	NIC	ENSMUSG00000070953.14	novel	1431	8	NA	NA	11	-7	intron_retention	FALSE	canonical	3	85	junction_6	126.641773869797	10	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTACTTGTGACTTTTT	2806	False	NA	NA	False	NA	NA	NA	34689755	34669235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_34669542_34670608_34670759_34674557_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
38379	chr1	+	2058	5	NNC	ENSMUSG00000026097.10	novel	1910	4	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	101.96414811099	582	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTAAAAATGTTCCTCTGT	NA	False	NA	NA	False	NA	NA	NA	53336247	53349464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_53336348_53338130_53338312_53338510_53338657_53344613_53344766_53347985
38380	chr12	-	1268	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	454	6	-340	-6	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTATTTCTGAGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	111638318	111635800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
38381	chrX	+	3516	22	NNC	ENSMUSG00000041229.16	novel	5728	22	NA	NA	13	-1998	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	28.6231278289431	1	67	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCACCCATTCCTACCCC	NA	False	NA	NA	False	NA	NA	NA	150304195	150414855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150304316_150305180_150305285_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269_150382581_150403859_150403956_150408187_150408298_150413145_150413483_150414334
38382	chr9	+	3609	15	NIC	ENSMUSG00000038535.18	novel	4200	21	NA	NA	54	-6	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	21.6584102531529	1	117	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGATTCCTGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	72219476	72271053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_72219531_72219932_72220043_72226005_72226124_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
38384	chr14	-	1964	5	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-44	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2355.05021177893	1	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTAATTTCTGAAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	36857273	36842808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36855103_36855228_36855589_36855761_36857151
38385	chr16	-	1871	20	NNC	ENSMUSG00000022771.18	novel	3088	20	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	172.822102823617	773	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGTCCAGTTTGAGCCC	NA	False	NA	NA	False	NA	NA	NA	16929094	16906512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921620_16923856_16923920_16925042_16925089_16927508_16927559_16929006
38386	chr5	+	1654	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	13	1008	13	7	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCCTTGCCTTTCAAAC	NA	False	NA	NA	False	NA	NA	NA	142946110	142957932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
38387	chr5	+	2579	11	NIC	ENSMUSG00000029516.20	novel	1671	11	NA	NA	-45	878	intron_retention	FALSE	canonical	3	20	junction_1	11.3507708989302	11	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACAGAATGCAGTGTGAG	8436	False	NA	NA	False	NA	NA	NA	115983291	116064646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115983361_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
38389	chr2	-	3042	8	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	250	junction_5	30.9825494003792	1	90	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTCTAGTAGGATCCA	9060	False	NA	NA	False	NA	NA	NA	25246312	25242303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25243529_25243619_25244647_25244752_25245734_25245825_25245966_25246040_25246155_25246242
38390	chr3	-	1630	14	NNC	ENSMUSG00000068921.15	novel	1409	13	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	321.706948863007	100	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88858459	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858132_88858190_88858267
38391	chr7	-	2492	2	NIC	ENSMUSG00000074227.13	novel	1211	6	NA	NA	6134	-4	intron_retention	FALSE	canonical	0	0	junction_1	0	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTACTATGTAGTTTG	3850	False	NA	NA	False	NA	NA	NA	28958481	28955769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28957632_28957851
38392	chr4	+	2794	11	NNC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_3	73.2636335435255	34	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8292	False	NA	NA	False	NA	NA	NA	156194475	156211722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156194631_156198345_156198459_156201152_156201306_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
38393	chr8	-	2036	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-11	1	intron_retention	FALSE	canonical	3	26	junction_3	59.2787225077326	629	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTAGCGATATTGTATT	NA	False	NA	NA	False	NA	NA	NA	106578651	106571303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572796_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106576154_106576257_106576346_106576464_106576556_106578502
38394	chr3	+	1493	14	NIC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-21	-2	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	260.373218702983	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTAAAGTGTTGTGAAGGT	NA	False	NA	NA	False	NA	NA	NA	69629394	69656373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_69629456_69629741_69629800_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
38395	chr4	+	809	2	NNC	ENSMUSG00000028426.11	novel	2176	2	NA	NA	16	-1476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	34	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATTGCATGTTTGCTTTT	7	True	NA	NA	False	NA	NA	NA	55350067	55390761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_55350231_55390115
38396	chr11	-	2796	7	Antisense	novelGene_ENSMUSG00000038366.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAGGTCAGCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	97729063	97697391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_97697467_97697646_97697746_97706521_97706606_97715664_97715774_97724369_97724528_97724908_97725012_97726895
38397	chr9	+	1243	5	ISM	ENSMUSG00000032518.7	ENSMUST00000217356.2	1101	7	992	27	-25	-27	3prime_fragment	FALSE	canonical	1	2	junction_1	2423.31993347969	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAAATAAAGTTGCTA	NA	False	NA	NA	False	NA	NA	NA	119957846	119960598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119958343_119959110_119959430_119959833_119959963_119960065_119960232_119960465
38398	chr13	-	1282	1	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	1844	481	1844	-481	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTAACGGTGTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	34312493	34311211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_34311200_34312500
38399	chr9	+	2497	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	35	250	-35	-250	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	1	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTAGCCTTGTGGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	77824680	77891551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
38401	chrX	+	2016	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	7	301	7	-301	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	2	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGCAATTCTGAATT	NA	False	NA	NA	False	NA	NA	NA	12454046	12482987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
38403	chr7	-	3559	23	FSM	ENSMUSG00000040907.16	ENSMUST00000080882.11	3621	23	49	13	-2	-10	multi-exon	FALSE	canonical	2	6	junction_18	15.2038490124504	97	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGAGAGAAAAGATGTGT	NA	False	NA	NA	False	NA	NA	NA	24705334	24677604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098_24698234_24698324_24698439_24700001_24700206_24700344_24700405_24700496_24700584_24705179
38404	chr17	+	3945	8	NNC	ENSMUSG00000005936.20	novel	4196	8	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	215.455284437019	1	196	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTCTTGTTATTTAATA	NA	False	NA	NA	False	NA	NA	NA	29171469	29188520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183957_29184059_29185625
38405	chr7	+	3456	7	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	69	-250	intron_retention	TRUE	non_canonical	0	0	junction_3	279.697256968236	1	198	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGATGGAGTCTTCTTACT	NA	False	NA	NA	False	NA	NA	NA	103868704	103884109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868745_103874713_103875188_103876015_103876116_103877358_103877584_103880995_103881097_103881547_103882792_103882837
38406	chr14	+	3943	13	NNC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	3694	-356	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	84.8542868687257	10	35	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTAGGCAAGACGCTC	NA	False	NA	NA	False	NA	NA	NA	57179551	57199802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_57179585_57180709_57180826_57181522_57181695_57182142_57182221_57183947_57184074_57185403_57185492_57186966_57187140_57187642_57187786_57193636_57193752_57194308_57194377_57194474_57194561_57195638_57195760_57197178
38408	chr6	-	1741	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	-108	5	4	-5	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	2	57	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446860	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
38409	chr12	+	3518	3	FSM	ENSMUSG00000060950.13	ENSMUST00000221089.2	601	3	0	-2917	0	0	multi-exon	FALSE	canonical	3	64	junction_1	75.5	13	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	NA	False	NA	NA	NA	111644538	111650336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_111644596_111645036_111645397_111647235
38410	chr7	-	4252	12	ISM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	759	0	-3	0	3prime_fragment	FALSE	canonical	2	21	junction_11	8.98943365042381	36	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCTTTGGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	7301773	7285307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690
38412	chr11	-	709	2	NNC	ENSMUSG00000025132.14	novel	2150	6	NA	NA	2400	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120469806	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469215_120469377
38413	chr5	+	2496	12	NNC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	53	-5	intron_retention	FALSE	non_canonical	0	0	junction_11	20.2125073789833	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTATGGTGGTGCATTC	8196	False	NA	NA	False	NA	NA	NA	138170382	138178686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175102_138177117
38415	chr13	-	3696	5	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18647	3063	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	30.2200264725232	1	206	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTTTTATGAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	74739506	74724413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74727579_74728971_74729033_74729232_74729360_74731765_74731993_74739390
38416	chr4	-	1618	3	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	214	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8	4	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224423	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219976_127220260_127220802_127224294
38417	chr8	+	2039	8	Genic_Genomic	ENSMUSG00000110711.2	novel	1782	1	NA	NA	-6677	15762	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGCTGGAACCGAGGCGC	NA	False	NA	NA	False	NA	NA	NA	96590764	96614985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_96591878_96593446_96593602_96596100_96596264_96597400_96597557_96598519_96598623_96598803_96598875_96604358_96604501_96614849
38418	chr10	-	2033	10	NNC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	17	235	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	239.228131216695	1	80	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACAGAAGTACTTGATTT	NA	False	NA	NA	False	NA	NA	NA	117546180	117525778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117526691_117527057_117527128_117528486_117528643_117530819_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538220_117541042_117541135_117545850
38419	chr11	-	1051	10	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	8523.05865082672	2	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113072	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106056_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110376_33111117_33111226_33111547_33111628_33112921
38420	chr13	+	2999	8	NIC	ENSMUSG00000021692.10	novel	3338	10	NA	NA	7	-845	intron_retention	FALSE	canonical	1	7	junction_6	214.601957120619	2	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGACCTAGTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	107083692	107095423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_107083792_107084093_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107093601_107093709_107095162
38421	chr10	+	1872	4	NNC	ENSMUSG00000061759.16	novel	5044	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	90.5428075553216	12	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	4382605	4405140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4382712_4384827_4384934_4389491_4389720_4403708
38422	chr18	-	5031	26	Antisense	novelGene_ENSMUSG00000024542.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	161	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACGTCCGCTAAAGGGGC	NA	False	NA	NA	False	NA	NA	NA	67984801	67933215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_67933256_67933723_67933896_67936058_67936225_67937433_67937561_67940323_67940475_67943144_67943199_67945396_67945521_67946943_67947071_67948924_67949067_67949803_67949932_67951840_67952202_67953359_67953504_67956345_67956413_67957653_67957865_67961423_67961540_67962893_67963036_67967571_67968389_67968478_67968594_67970986_67971154_67974048_67974931_67976205_67976354_67980420_67980658_67983185_67983307_67983478_67983623_67983743_67983803_67984732
38423	chr10	+	2879	11	NNC	ENSMUSG00000034453.9	novel	4975	28	NA	NA	41282	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	65.953316823341	4	64	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGATGTGGCAGTCAGA	NA	False	NA	NA	False	NA	NA	NA	84516241	84563016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549570_84550108_84550276_84554273_84554388_84556207_84556382_84561514
38424	chr15	+	3114	13	FSM	ENSMUSG00000023018.6	ENSMUST00000023759.6	3307	13	181	12	19	-12	multi-exon	FALSE	canonical	3	247	junction_12	25.0281785638153	238	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAAAGAGCAGGTCCCTG	7722	False	NA	NA	False	NA	NA	NA	99600190	99611860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99600380_99600986_99601175_99601471_99601515_99601618_99601742_99602211_99602335_99603507_99603625_99605191_99605294_99605520_99605683_99605765_99605864_99607161_99607298_99608973_99609097_99610039_99610142_99610252
38425	chr4	+	1449	5	FSM	ENSMUSG00000028797.21	ENSMUST00000102591.10	1437	5	-12	0	0	0	multi-exon	FALSE	canonical	3	325	junction_2	181.287582310538	649	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3164	False	NA	NA	False	NA	NA	NA	129494460	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501248
38426	chr6	-	1539	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	70	566	-6	-99	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	3	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGTTTTGACTAAA	NA	False	NA	NA	False	NA	NA	NA	87828018	87820162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
38427	chr6	-	3757	10	FSM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	127	2369	-14	974	multi-exon	FALSE	canonical	3	204	junction_2	11.5223882983853	299	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGACAGAGCATATCGTT	NA	False	NA	NA	False	NA	NA	NA	34153919	34132683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
38428	chr17	-	2423	16	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_1	734.480393808364	1	99	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5767	False	NA	NA	False	NA	NA	NA	33904366	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867782_33867839_33868568_33868974_33869017_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
38429	chr1	+	3221	3	NNC	ENSMUSG00000079144.8	novel	2257	2	NA	NA	48	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8	2	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATAAGTTCTTCAGCACT	1015	False	NA	NA	False	NA	NA	NA	192855941	192859984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_192856089_192856552_192858970_192859327
38430	chr14	-	2553	23	NNC	ENSMUSG00000025557.11	novel	3121	23	NA	NA	-24	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.0157933136861	21	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATATGTGTTTGTGTGTCT	3114	False	NA	NA	False	NA	NA	NA	121742688	121697030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_121697622_121699908_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
38432	chr3	+	2745	1	Antisense	novelGene_ENSMUSG00000052539.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGACTATTAGTATCCC	985	False	NA	NA	False	NA	NA	NA	103920613	103923358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_103920600_103923400
38433	chr3	+	2574	17	Antisense	novelGene_ENSMUSG00000106371.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGTCATTGTTGAAAA	4364	False	NA	NA	False	NA	NA	NA	103923992	103992697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_103924007_103924814_103924954_103927591_103927738_103928252_103928382_103929092_103929196_103935115_103935302_103941323_103941505_103945852_103946048_103950529_103950620_103954171_103954329_103956460_103956490_103958106_103958713_103961655_103961847_103963828_103963926_103968948_103969008_103987454_103987533_103992523
38434	chr15	-	1685	14	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	622.95456538382	1	59	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2757	False	NA	NA	False	NA	NA	NA	77855001	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846758_77848255_77848353_77849102_77849216_77850337_77850409_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
38435	chr9	+	1879	2	FSM	ENSMUSG00000009927.10	ENSMUST00000217620.2	743	2	-315	-821	1	-13	multi-exon	FALSE	canonical	3	12064	junction_1	0	16	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTATTGAATCAAATGAA	NA	False	NA	NA	False	NA	NA	NA	44318992	44321473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44319381_44319982
38436	chr17	+	1791	4	NIC	ENSMUSG00000023952.14	novel	857	7	NA	NA	51	186	intron_retention	FALSE	canonical	3	48	junction_2	5.31245915016974	1	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCAGTCACCCAAGTGA	NA	False	NA	NA	False	NA	NA	NA	46474009	46476907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46474436_46475119_46475760_46475911_46476110_46476380
38437	chr17	+	2625	2	ISM	ENSMUSG00000023952.14	ENSMUST00000166252.8	382	5	-92	-874	-92	-228	intron_retention	FALSE	canonical	3	69	junction_1	0	1	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGCTCTTACATAAACCT	NA	False	NA	NA	False	NA	NA	NA	46477264	46480034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_46477373_46477517
38438	chr13	-	2119	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000113450.2	novel	633	4	NA	NA	4	810	multi-exon	FALSE	canonical	1	2	junction_3	52.6459875014231	1	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCATGTGTCTAGGC	9516	False	NA	NA	False	NA	NA	NA	62614642	62549496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62551118_62555228_62555290_62555482_62555610_62604500_62604562_62604746_62604874_62614520
38440	chr3	+	2222	7	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	46	-7	intron_retention	FALSE	canonical	0	0	junction_1	485.157935338815	1	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAATTGTGTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	122068112	122078913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122068128_122068970_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
38441	chr7	+	3054	15	Antisense	novelGene_ENSMUSG00002076275.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTCCTTGTGGATTTGC	NA	False	NA	NA	False	NA	NA	NA	140682619	140697723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_140683161_140683916_140684496_140684585_140684642_140686683_140687233_140687308_140687413_140687512_140687597_140687709_140687771_140687958_140688058_140688165_140688604_140688696_140688757_140688853_140688901_140690288_140690428_140690544_140690670_140691067_140691142_140697625
38442	chr6	+	1504	6	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGGCTTCACAATGGCC	538	False	NA	84	True	NA	NA	NA	122294717	122298886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122296975_122297170_122297293_122297910_122298009_122298841
38444	chr19	+	2033	11	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.2485293921929	304	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6919	False	NA	NA	False	NA	NA	NA	8719146	8733006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8719519_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
38445	chr2	+	2420	2	FSM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	281	4	-46	-4	multi-exon	FALSE	canonical	3	571	junction_1	0	888	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTCGTGTCTTGTCTGG	8808	False	NA	NA	False	NA	NA	NA	164664886	164668787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164665121_164666601
38446	chr11	-	1850	6	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	25	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	2629.17728576831	1	115	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120239270	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120237360_120237462_120237645_120237736_120238172_120238461_120238702_120238794_120238924_120239250
38447	chr1	-	1516	8	Antisense	novelGene_ENSMUSG00000026456.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGAGCTCTCCGGGGCGTG	5232	False	NA	NA	False	NA	NA	NA	134339461	134333707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_134333790_134334048_134334200_134334335_134334409_134334782_134334893_134336129_134336228_134337339_134337422_134338227_134338329_134338642
38448	chr15	-	2726	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	188	0	51	0	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	18	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCGTTGTTGTTATTGT	11	True	NA	NA	False	NA	NA	NA	35155764	34875641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
38449	chr18	+	2931	11	NNC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	105.846870525302	1	93	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAGATCATCCTGTAAT	969	False	NA	NA	False	NA	NA	NA	38429730	38450878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_38429852_38430518_38430629_38431361_38431449_38432806_38432950_38433464_38433644_38440917_38440972_38441045_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
38450	chr10	+	1695	14	NNC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	182.432219722557	6	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAGAGTTTCAAAATATT	9205	False	NA	NA	False	NA	NA	NA	127102244	127117821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112312_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
38451	chr8	+	2281	14	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-8	-12	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_9	78.84986858041	28	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTATGGCCACAGAGGC	NA	False	NA	NA	False	NA	NA	NA	122677305	122752904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705340_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
38452	chr7	-	1387	10	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	5696	-613	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	821.687558895986	14	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGGGTTTTTCTTTGTCT	2512	False	NA	NA	False	NA	NA	NA	59649163	59632862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59648013_59648163_59649065
38453	chr11	+	3431	12	ISM	ENSMUSG00000078676.10	ENSMUST00000169695.2	3741	14	1089	-1	736	1	3prime_fragment	FALSE	canonical	3	273	junction_10	14.6682318223223	194	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGGCCAGTTATTGTG	378	False	NA	NA	False	NA	NA	NA	98701722	98724633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98701762_98712256_98712410_98712485_98712638_98713186_98713364_98713545_98714226_98718397_98718463_98719380_98719496_98719685_98719785_98720039_98720255_98722113_98722237_98722368_98722435_98723086
38454	chr5	+	1784	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	-18	-2346	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	69	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	605	False	NA	NA	False	NA	NA	NA	122988201	123007008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
38455	chr12	+	1456	11	NIC	ENSMUSG00000021115.16	novel	1509	13	NA	NA	5833	-2	intron_retention	FALSE	canonical	3	439	junction_10	174.525184429067	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGAAGGGTAATTTATAA	NA	False	NA	NA	False	NA	NA	NA	106002808	106041457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
38456	chr2	+	1873	13	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	32	-713	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1169.10571235738	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTATACTGTCGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121244395	121268455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121264041_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
38457	SIRV6	+	1929	2	NNC	SIRV6A	novel	783	3	NA	NA	-6	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	154	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATCATGGAAGATTTC	NA	False	NA	NA	False	NA	NA	NA	8993	10961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_10742_10780
38458	chr7	-	2068	8	NNC	ENSMUSG00000070426.13	novel	2249	9	NA	NA	13	4	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	115.151896135815	14	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACACGCATTTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	101714352	101668354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101669700_101672518_101672598_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
38459	chr15	+	622	4	ISM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	199	348	-2	-348	5prime_fragment	FALSE	canonical	3	10804	junction_2	277.709680541869	7	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATGTAAGTAACCAAGAA	NA	False	NA	NA	False	NA	NA	NA	76788500	76790166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055
38461	chr6	-	1606	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	-94	6	18	-6	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	1	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAATTGTGTAATTATAG	NA	False	NA	NA	False	NA	NA	NA	51446846	51439745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
38463	chr14	+	2052	9	NNC	ENSMUSG00000090440.3	novel	1757	5	NA	NA	-209826	-336	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	12.73528562695	196	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	41085341	41302926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41085450_41089611_41089926_41257607_41257738_41292619_41292723_41295191_41295324_41296051_41296215_41297159_41297292_41297971_41298154_41302138
38464	chr18	+	718	1	Intergenic	novelGene_4577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGCAGCTGTGACTTGG	NA	False	NA	NA	False	NA	NA	NA	82992086	82992804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_82992100_82992800
38465	chr11	-	2428	4	FSM	ENSMUSG00000034566.11	ENSMUST00000137563.8	510	4	-1922	4	18	-4	multi-exon	FALSE	canonical	3	2984	junction_1	272.998575494859	53	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCGTCTCTGAGTAGAT	NA	False	NA	NA	False	NA	NA	NA	115310770	115306518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664
38468	chr3	+	2794	10	Intergenic	novelGene_3093	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	126	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCCTGCACGCCGGACG	NA	False	NA	NA	False	NA	NA	NA	32637634	32670684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_32639373_32641706_32641927_32643857_32644062_32644146_32644212_32645258_32645423_32647306_32647370_32650424_32650533_32652274_32652313_32656192_32656290_32670587
38469	chr14	-	2013	8	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	5	258	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	107.347043532191	1	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAACCTTTGCCATTCTC	NA	False	NA	NA	False	NA	NA	NA	21102285	21085823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21095555_21095832_21102207
38470	chr13	-	3851	6	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-19	4629	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	102.955135860238	97	93	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCAGTCTCAGCATGCTG	NA	False	NA	NA	False	NA	NA	NA	65768076	65759008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65761711_65761786_65762285_65763699_65763903_65764103_65764190_65765670_65765887_65767930
38471	chrX	+	2706	22	NNC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	87	-109	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	326.210927408935	1	108	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCCCAGCCCCAGCCGCA	NA	False	NA	NA	False	NA	NA	NA	143118951	143152658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135751_143136537_143136625_143138579_143138649_143139908_143139958_143146860_143147104_143150894_143150936_143152556
38472	chr11	+	3599	5	NNC	ENSMUSG00000020455.17	novel	2251	6	NA	NA	18	0	intron_retention	FALSE	non_canonical	0	0	junction_1	25.1147367097487	81	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTCTGCTTATCCTGT	1707	False	NA	NA	False	NA	NA	NA	58868959	58882283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_58869471_58871019_58871126_58872066_58872163_58872818_58873050_58879628
38473	chr17	-	1651	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	10	8204	10	-273	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTTATGTTCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	30831623	30812113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
38474	chr11	+	1888	9	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	43	junction_1	163.42768852003	59	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTTAAGATCATCTTTAC	9188	False	NA	NA	False	NA	NA	NA	70538110	70542245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70538140_70538230_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540844_70540951_70541046_70541589_70541671_70541747
38475	chr11	-	2831	2	FSM	ENSMUSG00000034520.15	ENSMUST00000155089.2	3413	2	1724	-1142	837	-10	multi-exon	FALSE	canonical	3	782	junction_1	0	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAAATAATGTCTGTTAA	2843	False	NA	NA	False	NA	NA	NA	102694890	102690414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102692022_102693666
38476	chrX	-	2435	12	ISM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	1346	0	-33	0	3prime_fragment	TRUE	canonical	3	23	junction_11	7.54928708800971	77	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	167455548	167437112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258
38477	chr7	+	947	1	Intergenic	novelGene_2969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGCTGAATTCATGTGAT	2740	False	NA	NA	False	NA	NA	NA	49510055	49511002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_49510100_49511000
38479	chr3	+	1510	11	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	364.875924116678	10	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATCATGTTGAGATCAA	NA	False	NA	NA	False	NA	NA	NA	97066147	97083834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066241_97066373_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
38481	chr7	+	2744	22	NIC	ENSMUSG00000030534.14	novel	2574	23	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	97	junction_6	15.0759227482771	8	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79919419	79941317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
38483	chr6	-	2422	15	ISM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	17145	-2	-27	2	3prime_fragment	TRUE	canonical	3	496	junction_10	69.5407676643488	1	61	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGTCCTGGCTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	125151519	125144967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187
38484	chr15	+	1197	10	Antisense	novelGene_ENSMUSG00000022336.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGAGCGCTTGTTCGCT	NA	False	NA	NA	False	NA	NA	NA	43113453	43146098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_43113633_43114874_43115010_43115599_43115704_43124455_43124564_43125992_43126096_43126603_43126729_43128893_43129022_43129529_43129654_43134272_43134365_43145999
38485	chr13	-	3505	17	NNC	ENSMUSG00000025453.19	novel	3464	17	NA	NA	-201	-85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	82.4311976362712	1	181	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGATGTAGCTTCGTCTC	NA	False	NA	NA	False	NA	NA	NA	119545734	119472068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491199_119491277_119494038_119494199_119502867_119503043_119505011_119505173_119506447_119506682_119508931_119509128_119511164_119511246_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
38487	chr7	-	2906	18	NNC	ENSMUSG00000025474.10	novel	2960	18	NA	NA	47	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	122.758969960986	1	124	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGGCTGTTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	139616128	139575915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587795_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
38488	chr5	+	2465	13	FSM	ENSMUSG00000029179.15	ENSMUST00000113904.9	2485	13	20	0	-12	0	multi-exon	FALSE	canonical	3	81	junction_12	14.4327944472148	121	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCAGTTGTTATTCC	NA	False	NA	NA	False	NA	NA	NA	52940415	52982007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
38489	chrX	-	2079	1	Antisense	novelGene_ENSMUSG00000033361.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGTGTGTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	71016328	71014249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_71014200_71016300
38490	chr18	-	1510	7	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	13	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3052.73875215173	9	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTCCTTTGTGAATGGTG	212	False	NA	NA	False	NA	NA	NA	35087397	35070687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071763_35072416_35072538_35084276_35084459_35085448_35085537_35085729_35085789_35087222
38491	chr2	-	2262	7	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	0	8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	110.885326150738	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTGACATTGACTGCAAG	6129	False	NA	NA	False	NA	NA	NA	181007144	180999669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006397_181006505_181007011
38492	chr7	-	3396	12	FSM	ENSMUSG00000044465.20	ENSMUST00000179474.9	10853	12	47	7410	1	-9	multi-exon	FALSE	canonical	3	88	junction_4	97.1164419950871	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATCTCTATTCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	105049214	105027827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
38493	chr11	-	2375	9	NNC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	16	-6	intron_retention	FALSE	non_canonical	0	0	junction_5	87.1341458614245	19	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTATTCTTATCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	77971193	77964207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966655_77966815_77966878_77967058_77967128_77968642_77969216_77970902
38494	chr17	+	3369	20	FSM	ENSMUSG00000024036.17	ENSMUST00000165149.3	3389	20	-14	34	-3	-2	multi-exon	TRUE	canonical	3	70	junction_8	17.4641698891444	134	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAAAAAAAGCCC	NA	False	NA	NA	False	NA	NA	NA	31515174	31569667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31515890_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
38495	chr2	+	3344	8	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-19	-3	intron_retention	FALSE	canonical	3	227	junction_5	21.7649784220956	34	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACATGCCATCTAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	25390851	25395480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
38496	chr2	+	2040	16	NNC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	-2	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	494.407371394166	1	43	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGGTGTGCCAAACCC	7217	False	NA	NA	False	NA	NA	NA	29779820	29812534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804259_29804315_29804405_29804523_29804745_29804895_29805199_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812236
38498	chr3	-	2892	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20572	2284	intron_retention	TRUE	non_canonical	0	0	junction_1	0	1051	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGTTTCTATCTGCAA	NA	False	NA	NA	False	NA	NA	NA	103126863	103103257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103105611_103105688_103106156_103126791
38499	chr11	+	2020	15	NIC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	7	-6	intron_retention	FALSE	canonical	0	0	junction_7	28.8479476156044	25	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGACATTGAGTGCATTA	8667	False	NA	NA	False	NA	NA	NA	83363924	83397563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
38500	chr18	-	4774	17	NNC	ENSMUSG00000057440.9	novel	4981	17	NA	NA	-2	-161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	26.9672834189875	1	185	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTCAAACAATATATCTG	-13	True	NA	NA	False	NA	NA	NA	7626857	7348124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_7351145_7353153_7353298_7355053_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626728
38501	chr6	-	4099	18	FSM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	296	29	-3	-29	multi-exon	FALSE	canonical	3	33	junction_9	6.4238957016875	1	141	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATAAAGTTTTCTATATT	NA	False	NA	NA	False	NA	NA	NA	97125847	97087013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97125220_97125792
38502	chr15	+	1582	11	FSM	ENSMUSG00000022300.11	ENSMUST00000022909.10	1551	11	-31	0	-31	0	multi-exon	FALSE	canonical	2	478	junction_2	96.4514903980234	2931	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	38976228	39010251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
38504	chr11	-	1332	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	108	0	108	0	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	2731	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	NA	False	NA	NA	NA	117716810	117706351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
38507	chr2	-	2290	6	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5543	22101	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	22.7631280802969	20	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAGAAAATATTCAATAA	NA	False	NA	NA	False	NA	NA	NA	177021643	176984211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176984672_176989087_176990532_177007618_177007703_177008856_177008918_177009124_177009252_177021529
38508	chr10	+	564	3	NNC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3876	48	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	80662562	80665119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80662740_80664070_80664101_80664762
38510	chr8	+	3999	15	FSM	ENSMUSG00000002190.14	ENSMUST00000109831.3	2293	15	14	-1720	14	-1	multi-exon	FALSE	canonical	3	23	junction_5	6.81834260787527	66	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGTGTGTGTCTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	84116520	84155180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84116730_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
38511	chr8	-	2751	4	ISM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	1708	11	1673	-8	3prime_fragment	FALSE	canonical	3	21	junction_1	3.2659863237109	94	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACTAAAGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	3515972	3507115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_3509435_3510271_3510335_3513921_3514101_3515782
38513	chr19	+	1334	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	153	377	153	-377	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	6	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCTTGCCAGTCGCCT	996	False	NA	NA	False	NA	NA	NA	8944557	8955466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
38514	chr13	-	4004	9	FSM	ENSMUSG00000021638.13	ENSMUST00000069756.11	4052	9	35	13	-3	-13	multi-exon	FALSE	canonical	3	42	junction_8	12.8640730330638	79	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTATTTACAGTAAATACT	NA	False	NA	NA	False	NA	NA	NA	100688971	100633027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688894
38515	chr4	+	1663	11	NNC	ENSMUSG00000028601.19	novel	1319	10	NA	NA	-5	-3	intron_retention	FALSE	canonical	2	6	junction_7	348.080450470865	351	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGCTTGTGCTGGAATT	NA	False	NA	NA	False	NA	NA	NA	108022709	108036500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108032455_108032615_108034269_108034321_108035567_108035616_108036103
38516	chr15	+	3693	17	ISM	ENSMUSG00000022436.17	ENSMUST00000061239.14	1917	18	46	14	46	-10	intron_retention	FALSE	canonical	3	401	junction_16	46.1503995107301	171	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAACAAAACAGGAGTAAC	4444	False	NA	NA	False	NA	NA	NA	78784013	78796237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207
38517	chr14	+	2175	4	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-7	-1890	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	262.339474726927	4	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTTTTAAATGTGCATT	NA	False	NA	NA	False	NA	NA	NA	52517066	52531968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52529022_52529676_52529976_52530141_52530657
38518	chr2	+	1413	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACCCCGCCCTCCTCTCA	NA	False	NA	NA	False	NA	NA	NA	154714355	154734754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714824_154715472_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726361_154729617_154729729_154730104_154730283_154734611
38520	chr2	-	2790	6	ISM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	10483	3	-1921	-1	3prime_fragment	FALSE	canonical	3	1349	junction_3	66.9489357645064	6	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGCTCTCTGGTTGTT	7446	False	NA	NA	False	NA	NA	NA	11597590	11590250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499
38521	chrX	-	2914	1	Intergenic	novelGene_4098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGCATGGAATGCATGC	NA	False	NA	NA	False	NA	NA	NA	158305344	158302430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_158302400_158305300
38523	chr2	+	2068	11	Antisense	novelGene_ENSMUSG00000027635.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	203	9	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGCGTGCGCAGCCTCCG	NA	False	NA	NA	False	NA	NA	NA	156837196	156848993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_156838202_156838652_156838741_156839526_156839675_156840639_156840720_156841056_156841116_156842753_156842845_156843602_156843680_156844610_156844683_156847087_156847412_156847767_156847788_156848889
38524	chr5	+	782	4	ISM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	70	24320	70	2425	5prime_fragment	FALSE	canonical	3	62	junction_3	4.10960933531265	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATTACATTTTATTTA	7147	False	NA	NA	False	NA	NA	NA	137786129	137796563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159
38527	chr10	-	1410	8	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	22	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	964.469463974249	6	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTAATGTGTATGGTT	NA	False	NA	NA	False	NA	NA	NA	93725568	93696782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704735_93704824_93715954_93716001_93722855_93722964_93725399
38529	chr1	+	4655	11	FSM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	44	10	44	-10	multi-exon	FALSE	canonical	3	32	junction_8	8.09691299199886	62	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAACAAAATGTCTCCGAG	NA	False	NA	NA	False	NA	NA	NA	179373978	179455033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_179374182_179406902_179407334_179420249_179420432_179429266_179429298_179432083_179432171_179432517_179432633_179433812_179433835_179434001_179434099_179437350_179438232_179450331_179450468_179452563
38530	chr14	+	4308	21	NIC	ENSMUSG00000006527.17	novel	2960	19	NA	NA	10	1042	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	24.2978908549693	64	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTAAGCATTTTTCCTC	NA	False	NA	NA	False	NA	NA	NA	30437133	30541345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30437199_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
38531	chr4	+	1613	8	ISM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	144	269	103	-269	3prime_fragment	FALSE	canonical	3	1317	junction_6	60.4871381167188	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGAAATGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	132495789	132505794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
38532	chr14	+	1704	11	NNC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	16	-7	intron_retention	FALSE	canonical	3	12	junction_6	493.082346064022	19	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAAGATAAAGCTTTATT	NA	False	NA	NA	False	NA	NA	NA	73790221	73833216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828238_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
38533	chr2	+	2755	14	FSM	ENSMUSG00000026748.14	ENSMUST00000028081.13	6947	14	36	4156	36	-6	multi-exon	FALSE	canonical	3	34	junction_8	9.12179261942059	90	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGACACTTTTGGTTCAA	135	False	NA	NA	False	NA	NA	NA	16361150	16756494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708195_16716892_16717041_16718480_16718520_16734063_16734225_16756001
38534	chr4	+	2333	6	NIC	ENSMUSG00000028221.4	novel	2339	7	NA	NA	220	321	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	113.296778418453	16	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTTTGTAACAGCTCTC	28	True	NA	NA	False	NA	NA	NA	14864295	14915497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_14864438_14886533_14886683_14893500_14893625_14902486_14902540_14912431_14912523_14913723
38535	chr9	+	665	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	31	-206	31	206	mono-exon	FALSE	NA	NA	NA	NA	NA	206	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	96777741	96778406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
38536	chr16	-	2838	5	NNC	ENSMUSG00000013089.16	novel	3773	13	NA	NA	-9865	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	473.498680040399	1	126	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGCATTCCTGCAACCTG	NA	False	NA	NA	False	NA	NA	NA	22230444	22200065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22202442_22205506_22205609_22211404_22211550_22220528_22220682_22230382
38537	chr14	-	1371	9	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5079	0	intron_retention	FALSE	canonical	2	8	junction_2	120.257471181628	61	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607998	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
38538	chr1	-	2150	9	FSM	ENSMUSG00000026047.14	ENSMUST00000141125.8	2085	9	-65	0	-10	0	multi-exon	FALSE	canonical	3	275	junction_5	36.3145976158349	713	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGTTTTGTTACAGTT	NA	False	NA	NA	False	NA	NA	NA	44157978	44146044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
38539	chr2	+	3413	2	FSM	ENSMUSG00000039164.3	ENSMUST00000048431.3	4650	2	1759	-522	1759	522	multi-exon	FALSE	canonical	3	24	junction_1	0	84	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCAAAAGTTATGGTAGT	NA	False	NA	NA	False	NA	NA	NA	32342227	32347487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32342962_32344808
38540	chr5	-	1819	13	NNC	ENSMUSG00000041740.17	novel	3112	17	NA	NA	-1880	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	448.01068780654	13	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCTTCCCGACAAGCAT	NA	False	NA	NA	False	NA	NA	NA	115389426	115379828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115380121_115380451_115380551_115380704_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335
38541	chr4	+	2230	6	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-104084	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	40.4504635325728	1	143	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATAAAGCTGAAAGATTC	NA	False	NA	NA	False	NA	NA	NA	147533649	147669630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147545579_147545694_147665698_147665826_147667290_147667435_147668014
38542	chr7	+	3250	14	ISM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	3143	34	3110	-34	3prime_fragment	FALSE	canonical	3	93	junction_6	62.4571805982629	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATACACCTGTA	4170	False	NA	NA	False	NA	NA	NA	45087410	45106009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
38543	chr5	-	3669	11	Antisense	novelGene_ENSMUSG00000029528.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGGAGTCTATATGTGTC	NA	False	NA	NA	False	NA	NA	NA	115694046	115680971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115681119_115682400_115682625_115682935_115683054_115683428_115683566_115683660_115683861_115684859_115685006_115689907_115690079_115690160_115690335_115690820_115690903_115691034_115691185_115691926
38545	chr13	+	2528	6	NIC	ENSMUSG00000021431.16	novel	1785	9	NA	NA	-4869	67	intron_retention	FALSE	canonical	1	67	junction_3	66.8831817424979	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTCAAAATTGTACAC	NA	False	NA	NA	False	NA	NA	NA	38395042	38411023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_38395118_38398580_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
38546	chr11	-	2172	6	NNC	ENSMUSG00000000782.17	novel	813	9	NA	NA	17099	69	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	78.0117939801412	3	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGTTTTTCAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	52148605	52143128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_52144813_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510
38549	chr10	-	1322	6	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-10	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	865.165279007428	81	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATACATTTTAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	93725656	93696787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93715940_93716001_93722855_93722964_93725399
38550	chr4	+	1596	10	NNC	ENSMUSG00000028601.19	novel	1319	10	NA	NA	52	-9	intron_retention	FALSE	canonical	0	0	junction_1	313.776912180109	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAACTGTTAGCTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	108022766	108036494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108022859_108026756_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
38551	chr4	-	2182	10	Fusion	ENSMUSG00000085241.8_ENSMUSG00000028896.14	novel	2285	10	NA	NA	0	-26	multi-exon	FALSE	non_canonical	0	0	junction_4	182.858779754578	1	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAATAAACTTAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	132080944	132059259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062204_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132080907
38552	chr1	+	2976	15	NNC	ENSMUSG00000050122.20	novel	665	5	NA	NA	6742	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	19.0016111024775	191	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAAATGTTGCAGATTTC	NA	False	NA	NA	False	NA	NA	NA	37081530	37180410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37082066_37083844_37084290_37090797_37090961_37099410_37099581_37102514_37102631_37124313_37124440_37139716_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
38553	chr10	-	1513	10	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	34	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	468.569454118953	19	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTCTTCTCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	85793653	85774502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_85774984_85777762_85777883_85778351_85778463_85782149_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
38554	chr8	+	2048	1	Genic_Genomic	ENSMUSG00000031910.15	novel	NA	NA	NA	NA	13023	1395	mono-exon	FALSE	NA	NA	NA	NA	NA	4	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCCCAACAGGCCTCCTGG	NA	False	NA	NA	False	NA	NA	NA	107610545	107612593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_107610500_107612600
38555	chr17	+	2010	8	ISM	ENSMUSG00000025736.16	ENSMUST00000026832.14	2091	9	79	77	1	-2	intron_retention	FALSE	canonical	3	70	junction_1	9.46960766810089	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCAGTGTCTGCTGGGGG	NA	False	NA	NA	False	NA	NA	NA	26048095	26050739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273
38556	chr7	-	2519	6	NIC	ENSMUSG00000030423.8	novel	2113	7	NA	NA	-2	-828	intron_retention	FALSE	canonical	3	243	junction_2	19.394844675841	19	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCATAAATGGCTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	37970775	37962247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37968379_37970570
38557	chr2	+	4539	7	FSM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	18	10	18	-10	multi-exon	FALSE	canonical	3	70	junction_4	11.1118055338555	176	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTGTCCTTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	128907879	128938193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
38558	chr2	-	1095	7	ISM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	4973	1017	4973	-1017	internal_fragment	FALSE	canonical	3	12105	junction_2	804.091913624031	3	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	8758	False	NA	NA	False	NA	NA	NA	154729729	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623
38559	chr18	-	1921	13	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	0	-11	intron_retention	FALSE	canonical	1	8	junction_5	53.1822730490778	1	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATTAAACCAAAACCTCT	2801	False	NA	NA	False	NA	NA	NA	34884577	34866060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166
38560	chr7	-	958	2	Genic_Genomic	ENSMUSG00000086583.4	novel	1019	1	NA	NA	0	5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	114305470	114304446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_114304580_114304645
38561	chr11	-	1802	13	FSM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	14	-330	-1	0	multi-exon	FALSE	canonical	3	99	junction_7	91.5034911295131	38	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	NA	False	NA	NA	NA	120508737	120500912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
38562	chr18	-	1737	4	NIC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	89	-2	intron_retention	FALSE	canonical	3	375	junction_3	11.7756811551038	132	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTTTTTTGCAAGACTT	NA	False	NA	NA	False	NA	NA	NA	53551098	53539405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_53540138_53542196_53542382_53544058_53544692_53550911
38563	chr5	-	2127	10	Genic_Genomic	ENSMUSG00000104559.2	novel	775	1	NA	NA	343	56767	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	63	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCGCCTCCCAATCGTC	NA	False	NA	NA	False	NA	NA	NA	111535812	111478613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_111478717_111486128_111486293_111494346_111494446_111495642_111495719_111497354_111497440_111519175_111519259_111528058_111528166_111530850_111530974_111534366_111534829_111534987
38564	chr5	+	1121	8	ISM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	4835	3	4593	-3	3prime_fragment	FALSE	canonical	3	4657	junction_7	219.143136524314	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTCTCTGTAGATTTCC	5288	False	NA	NA	False	NA	NA	NA	135812168	135819242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
38565	chr10	-	2483	7	Antisense	novelGene_ENSMUSG00000099283.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	73	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGGGGCACCACGGGAGCG	NA	False	NA	NA	False	NA	NA	NA	80450722	80438716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_80438786_80444639_80444681_80445159_80445255_80445470_80445643_80446868_80446963_80448174_80449908_80450443
38566	chrX	+	2175	3	NNC	ENSMUSG00000002014.13	novel	619	4	NA	NA	-5	0	intron_retention	FALSE	canonical	3	147	junction_2	517	27	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5427	False	NA	NA	False	NA	NA	NA	72830628	72834432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72830913_72832440_72832560_72832660
38567	chr8	+	4236	2	ISM	ENSMUSG00000046794.10	ENSMUST00000211648.2	4386	3	906	5	4	0	3prime_fragment	FALSE	canonical	3	26	junction_1	0	30	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAATGAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	35843817	35855283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_35843908_35851137
38568	chr16	-	2517	3	NNC	ENSMUSG00000043140.11	novel	3391	2	NA	NA	174	-655	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAAAGTGTTTGTGGGTT	NA	False	NA	NA	False	NA	NA	NA	8455402	8451747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_8452783_8452827_8454257_8455349
38569	chr11	+	1371	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	47	682	3	540	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGGGTGTTAGCTTGAG	3038	False	NA	NA	False	NA	NA	NA	75623741	75655989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
38571	chr9	+	1340	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	26	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6139.92890737786	2	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64080700	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083494_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
38572	chr5	+	1609	13	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-6	511	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	371.920494416033	1	61	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAATACTGTTAGGATGG	NA	False	NA	NA	False	NA	NA	NA	31652104	31668714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652251_31652861_31652956_31655647_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
38573	chr11	-	2240	10	Fusion	ENSMUSG00000020743.16_ENSMUSG00000020744.14	novel	2614	8	NA	NA	-1545	-18	intron_retention	FALSE	canonical	1	1	junction_4	127.328970256838	3	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTTCTGAAACCAAACT	NA	False	NA	NA	False	NA	NA	NA	115515196	115498761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115506286_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024
38574	chr4	+	1321	14	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	112	-17408	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	165.266755857662	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGAGCCGAAGATTCC	16	True	NA	NA	False	NA	NA	NA	44300987	44347267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332919_44340631_44340746_44344912_44344999_44347142
38575	chr12	-	1361	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	-57	-5	20	-3	multi-exon	FALSE	canonical	0	0	junction_1	973.5	82	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105189032	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_105183961_105184917_105185089_105188791
38576	chr2	-	1582	13	NNC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	4	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	81.7088326518825	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTCCTTGTCTAGTAGG	9033	False	NA	NA	False	NA	NA	NA	25246339	25242308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243678_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
38577	chr2	+	2400	5	NNC	ENSMUSG00000026960.7	novel	2548	4	NA	NA	22	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	219.364280364876	8	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTTCTTTGTGTGTAA	NA	False	NA	NA	False	NA	NA	NA	53082121	53109224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_53082275_53082392_53082535_53084295_53084350_53092930_53093064_53107306
38578	chr11	-	1046	3	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-69	154	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCAATAAAGTTCGCTGC	4392	False	NA	NA	False	NA	NA	NA	20286082	20284857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285018_20285151_20285488_20285532
38581	chr7	-	2911	19	NNC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	97.3625653719255	197	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	823	False	NA	NA	False	NA	NA	NA	30855370	30829551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30854291_30854572_30855260
38582	chr1	+	2831	9	NNC	ENSMUSG00000026174.10	novel	3268	8	NA	NA	290	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.195668751818	15	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTTTTTGTTTTGTTTT	1152	False	NA	NA	False	NA	NA	NA	74545508	74569986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844_74569301_74569430
38583	chr8	-	2264	3	Antisense	novelGene_ENSMUSG00000005483.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	726	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCGTGACGCAGCACATC	NA	False	NA	NA	False	NA	NA	NA	84338532	84334803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_84335170_84336440_84337022_84337215
38584	chr6	+	2632	14	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	-5	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	603.594665905903	1	121	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAACTGAATAAAGCAACA	NA	False	NA	NA	False	NA	NA	NA	71808388	71852209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821624_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830158_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
38585	chr12	-	1857	9	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	-36	20	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	344.127315647857	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTCTTTTTCTTTTT	76	False	NA	NA	False	NA	NA	NA	78908305	78889755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78907638
38586	chr6	+	2566	16	NNC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-47	68	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.1985935145888	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCATATCCAGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	58573608	58669428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_58574094_58632626_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648955_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
38587	chr2	-	3252	2	Antisense	novelGene_ENSMUSG00000052033.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	51	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGAGGACTCCCTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	170360960	170355726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_170358609_170360590
38588	chr9	-	2143	10	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4346	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	89.6347871182188	327	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	27033500	27008679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27011611_27011764_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
38589	chr5	+	2114	13	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	270.487471469978	1	97	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815954	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825653_33826821_33826992_33828747_33828855_33829008_33829130_33829325
38590	chr5	-	1455	1	ISM	ENSMUSG00000029238.12	ENSMUST00000202651.4	9744	23	93470	0	62690	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACATTTTCCTTTCTTTA	4620	False	NA	NA	False	NA	NA	NA	76359169	76357714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_76357700_76359200
38591	chr9	+	1839	16	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-4	1699	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	317.628462200729	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGAGACCTCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	44290876	44299066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44290893_44291809_44291912_44292112_44292207_44292350_44292430_44292550_44292706_44292814_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44296992_44298546_44298627_44298984
38592	chr9	+	3577	11	NNC	ENSMUSG00000032531.16	novel	4427	11	NA	NA	140	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	85.4131137472461	2	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAGATGTCTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	102595006	102610609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_102595102_102597279_102597346_102597950_102598076_102600767_102601063_102601885_102602031_102602299_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
38593	chr2	+	4473	5	FSM	ENSMUSG00000017679.17	ENSMUST00000109408.10	1999	5	27	-2501	0	-11	multi-exon	FALSE	canonical	3	17	junction_1	3.8405728739343	32	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAAAGCGGAGTGCATTG	5726	False	NA	NA	False	NA	NA	NA	163444268	163460921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_163444335_163449131_163449595_163453678_163453873_163455654_163455766_163457282
38594	chr17	+	620	1	NIC	ENSMUSG00000024462.18	novel	5248	23	NA	NA	-127	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTACGAGCTCAAGCTTAT	NA	False	NA	NA	False	NA	NA	NA	37361395	37362015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_37361400_37362000
38595	chrX	-	1260	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	-188	-73	188	mono-exon	FALSE	NA	NA	NA	NA	NA	12	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79238531	79237271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237300_79238500
38596	chr2	-	1726	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	67	-308	intron_retention	TRUE	non_canonical	0	0	junction_1	147.078210486802	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAACAAGAACATAAGCGA	NA	False	NA	NA	False	NA	NA	NA	177482044	177473891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177473917_177474590_177476105_177476312_177476485_177482029
38597	chr4	-	1946	12	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-3	-8	combination_of_known_junctions	FALSE	canonical	1	2	junction_10	108.826345862199	55	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTACACTTCCTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	147952943	147945255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952525_147952641_147952825
38598	chr1	-	3428	19	Antisense	novelGene_ENSMUSG00000103390.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	39	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGATCGAGCCTGGGGCC	NA	False	NA	NA	False	NA	NA	NA	127411598	127133024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127133162_127177523_127177575_127234368_127234749_127248336_127248499_127292880_127292960_127294137_127294228_127310655_127310729_127312503_127312667_127315079_127315250_127318480_127318616_127325243_127325378_127339863_127339996_127373976_127374127_127387570_127387718_127396926_127397050_127399241_127399311_127407199_127407360_127410263_127411237_127411498
38599	chr17	-	1832	3	NIC	ENSMUSG00000092203.8	novel	520	4	NA	NA	-1	0	intron_retention	FALSE	canonical	3	94	junction_2	48	32	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6006	False	NA	NA	False	NA	NA	NA	35171448	35169216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35169452_35169673_35171150_35171327
38600	chr7	-	2763	5	Fusion	ENSMUSG00000074166.8_ENSMUSG00000056383.11	novel	1701	5	NA	NA	8	0	intron_retention	TRUE	non_canonical	0	0	junction_4	36.698092593485	6	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTTCTGACTTTT	NA	False	NA	NA	False	NA	NA	NA	41148843	41022346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_41024799_41025914_41025973_41026169_41026297_41042650_41042749_41148815
38601	chr5	-	1761	2	Antisense	novelGene_ENSMUSG00000036323.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTCCTTTTCCAATCT	NA	False	NA	NA	False	NA	NA	NA	77147770	77145400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77145430_77146038
38602	chr7	-	1627	9	FSM	ENSMUSG00000036427.6	ENSMUST00000206603.2	1601	9	-29	3	-3	-3	multi-exon	FALSE	canonical	3	1600	junction_6	111.622060431619	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCTAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	33929717	33914636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
38603	chr15	-	1506	5	NIC	ENSMUSG00000055762.17	novel	713	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	2715	junction_2	162.376683978951	30	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	75781146	75767336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75768314_75768488_75768769_75772539_75772612_75772980_75773105_75781093
38604	chr2	-	2311	11	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	11	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	200.391142518825	2	75	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGCTTTATAGGAATCT	NA	False	NA	NA	False	NA	NA	NA	165740925	165669065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
38605	chrX	-	1714	3	FSM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	-1301	6	-1301	-6	multi-exon	FALSE	canonical	3	2951	junction_1	110	570	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAAGTCATTTTTATTTT	1011	False	NA	NA	False	NA	NA	NA	36456117	36451246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36451395_36453526_36453617_36454641
38607	chr9	+	1994	4	FSM	ENSMUSG00000032103.11	ENSMUST00000034615.10	2019	4	6	19	0	-19	multi-exon	FALSE	canonical	3	88	junction_3	6.68331255192114	343	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGATATATTGAACTCAT	NA	False	NA	NA	False	NA	NA	NA	35470761	35478678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_35470814_35476079_35476494_35476585_35477152_35477716
38609	chr5	-	3593	28	NNC	ENSMUSG00000029086.16	novel	3966	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.1352823507781	3	57	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTGGTGTTTGGTCCTT	NA	False	NA	NA	False	NA	NA	NA	44252110	44150963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_44151475_44151538_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44215967_44215995_44220467_44220527_44251736
38610	chr7	-	3393	5	NIC	ENSMUSG00000030881.16	novel	1772	8	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	119	junction_2	6.89202437604511	4	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCAGTGAGGTCAATTT	NA	False	NA	NA	False	NA	NA	NA	105289522	105284828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105286193_105286327_105287248_105287415_105288313_105288531_105288673_105289451
38612	chr11	+	1920	13	NIC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	22	0	intron_retention	FALSE	canonical	3	22	junction_10	267.655082252431	70	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120563945	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120600073_120600169
38615	chr4	-	4674	1	ISM	ENSMUSG00000028403.16	ENSMUST00000030110.15	8763	9	56255	7	47396	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	74	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATAGGAATGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	82721655	82716981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_82717000_82721700
38616	chr13	+	3694	2	FSM	ENSMUSG00000067586.5	ENSMUST00000087978.5	4463	2	102	667	102	-667	multi-exon	FALSE	canonical	3	36	junction_1	0	48	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGAGGCCTGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	51562776	51576166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_51562982_51572677
38619	chr15	+	1293	4	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	630.303630535845	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141068_80141186
38620	chr7	+	2025	2	ISM	ENSMUSG00000046364.15	ENSMUST00000053298.8	760	4	55	0	-2	0	intron_retention	FALSE	canonical	3	17247	junction_1	0	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	NA	False	NA	NA	NA	109118474	109120973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109119201_109119674
38621	chr3	-	2610	8	NNC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	-7	-187	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.5736937101462	6	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCATAAATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	35986992	35947841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_35948794_35948946_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
38622	chr13	+	2931	10	Genic_Genomic	ENSMUSG00000085962.9	novel	982	5	NA	NA	13704	3678	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGCCAGAGGTGCGCTC	NA	False	NA	NA	False	NA	NA	NA	35161744	35178113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_35162049_35162631_35162776_35164243_35164334_35170048_35170168_35171445_35171551_35172264_35173684_35174165_35174352_35174699_35174802_35177052_35177214_35177812
38624	chr4	+	960	1	FSM	ENSMUSG00002075410.1	ENSMUST00020182042.1	84	1	75	-951	75	951	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	103421474	103422434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_103421500_103422400
38625	chr17	+	2897	10	NIC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	-6	-17	intron_retention	FALSE	canonical	3	256	junction_1	26.4701089281224	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTATTCTTCTATCATT	9238	False	NA	NA	False	NA	NA	NA	57071771	57076823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
38626	chr7	+	2611	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	105	6	105	2	multi-exon	FALSE	canonical	3	986	junction_1	0	2	146	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACTTGCTGTGAGTAT	180	False	NA	NA	False	NA	NA	NA	44465616	44480230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
38627	chr11	+	1426	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	-27	3	1	-3	multi-exon	FALSE	canonical	3	55	junction_1	286.604256772296	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCGTGTTGTGCTGGGTGG	NA	False	NA	NA	False	NA	NA	NA	117700494	117705106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
38628	chr6	+	1513	11	NIC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	2	0	intron_retention	FALSE	canonical	3	960	junction_9	81.0392497497355	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5442	False	NA	NA	False	NA	NA	NA	83031730	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83034075_83034256_83034376_83034478
38630	chr1	+	5735	11	ISM	ENSMUSG00000048960.14	ENSMUST00000027056.12	11053	40	193278	1313	46052	-1313	3prime_fragment	TRUE	canonical	3	21	junction_4	5.25452186216786	27	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTAAACAAAGGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	11256966	11372592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_11256990_11263736_11263779_11270058_11270277_11274289_11274393_11278735_11278880_11301905_11302021_11335902_11335970_11336192_11336384_11355280_11355384_11359476_11359545_11367931
38631	chr8	-	2304	8	NNC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	-4	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	32.2256077664699	320	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGTGAGTGTAATTTTAA	4681	False	NA	NA	False	NA	NA	NA	70687103	70672842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676118_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
38632	chr13	-	1368	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-8	-137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3068.19263916168	1	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTCTAAGACTAGTGAA	4743	False	NA	NA	False	NA	NA	NA	58550338	58540209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541932_58542137_58542179_58542291_58542578_58543413_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
38633	chr7	-	2632	17	NNC	ENSMUSG00000030720.17	novel	2487	17	NA	NA	-83	0	intron_retention	FALSE	canonical	3	8	junction_16	52.3649677145895	3	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	126184041	126171257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345_126183453_126183991
38634	chr4	-	6105	5	Antisense	novelGene_ENSMUSG00000028309.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	122	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTTTACCCGAGGCACGG	NA	False	NA	NA	False	NA	NA	NA	49643787	49632042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_49632509_49633249_49633410_49637904_49638072_49638184_49638334_49638624
38636	chr14	-	3113	8	FSM	ENSMUSG00000036242.16	ENSMUST00000036972.14	8831	8	0	5718	0	-2	multi-exon	FALSE	canonical	3	15	junction_3	7.71693076346829	62	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAATTTATGCTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	50020840	49919126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_49919874_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
38637	chr17	-	2904	4	ISM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	33	9960	-14	2814	5prime_fragment	FALSE	canonical	3	305	junction_2	72.0755776174488	7	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGTGCCCAGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	53996328	53991773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_53994309_53994738_53994887_53995017_53995149_53996238
38638	chr5	+	3225	3	ISM	ENSMUSG00000029651.17	ENSMUST00000110514.8	1532	8	37878	-2014	49	-13	3prime_fragment	FALSE	canonical	3	103	junction_2	5.5	234	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCCATGATATCCATGT	NA	False	NA	NA	False	NA	NA	NA	148240032	148252862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_148240413_148243439_148243538_148250115
38639	chr11	-	3217	9	NNC	ENSMUSG00000025162.19	novel	3675	9	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	192.429207762231	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTTCTTCCCTCCCCTT	1116	False	NA	NA	False	NA	NA	NA	120881816	120852581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864751_120874124_120874170_120881760
38640	chr13	-	1559	4	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	-21	433	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	48.0300831655421	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	62564878	62549873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62551118_62555228_62555290_62555482_62555610_62564751
38641	chr7	+	1845	5	NIC	ENSMUSG00000006333.15	novel	1347	5	NA	NA	-2	1	intron_retention	FALSE	canonical	3	206	junction_3	5942.55889221975	49	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1307	False	NA	NA	False	NA	NA	NA	3707034	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3707448_3707644_3708919_3709006_3709181_3709649
38642	chr1	+	2217	8	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	7752	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.0920164530211	4	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	NA	False	NA	NA	NA	165965787	165994079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165965915_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992854_165992911
38643	chr10	+	1970	8	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	287.865402221105	1246	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	80438725	80451618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80449725_80449903_80450437
38644	chr6	+	1749	11	FSM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	199	1079	46	-35	multi-exon	FALSE	canonical	3	404	junction_1	54.9894535342915	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTCAAAGGTCAAGGCACAA	NA	False	NA	NA	False	NA	NA	NA	72575656	72584329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
38645	chr18	+	1813	17	Intergenic	novelGene_4546	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.484122918275927	3	13	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCCTGCCCCCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56659822	56695388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_56660080_56661348_56661424_56664560_56664638_56664783_56664879_56665050_56665168_56667259_56667351_56670278_56670371_56671772_56671814_56675295_56675395_56678036_56678114_56679974_56680016_56681513_56681651_56683366_56683490_56684229_56684313_56692293_56692359_56693846_56693901_56695099
38646	chr10	+	4048	3	ISM	ENSMUSG00000058297.17	ENSMUST00000121820.9	5238	11	23478	0	23229	0	3prime_fragment	FALSE	canonical	2	6	junction_2	2.5	51	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTGAGAAACCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	59965518	59971020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_59965566_59966905_59967044_59967157
38647	chr3	-	1852	5	FSM	ENSMUSG00000001017.16	ENSMUST00000107346.8	1321	5	7	-538	-5	0	multi-exon	FALSE	canonical	3	97	junction_1	566.644233624591	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	90416774	90406262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90407415_90410402_90410590_90413414_90413569_90414851_90414934_90416497
38649	chr15	-	2896	12	NNC	ENSMUSG00000016664.17	novel	3186	11	NA	NA	-19	-14	intron_retention	FALSE	non_canonical	0	0	junction_1	229.357240569494	1	77	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGACAGTCCCTTTG	NA	False	NA	NA	False	NA	NA	NA	83317044	83260336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83260664_83260963_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316864
38650	chr11	+	1298	1	Intergenic	novelGene_2431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTTTTTACCGTCTGTA	3669	False	NA	NA	False	NA	NA	NA	83668274	83669572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_83668300_83669600
38651	chr3	+	1904	11	NNC	ENSMUSG00000028180.19	novel	2737	11	NA	NA	-2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	254.012676849011	61	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTATCAAGTGTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	157239993	157253972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311_157252541_157253288
38652	chr3	-	2552	18	Antisense	novelGene_ENSMUSG00000001415.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACACAGACACACACGT	NA	False	NA	NA	False	NA	NA	NA	88266380	88247954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88248066_88249159_88249269_88249752_88249828_88250184_88250343_88252668_88252760_88253751_88253841_88254823_88254901_88256445_88256574_88256681_88256747_88257318_88257530_88258001_88258139_88258282_88258885_88260265_88260443_88261179_88261256_88261834_88262013_88262882_88263043_88265958_88266017_88266330
38653	chrX	+	1507	7	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	702.017667552289	3	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGCCTGACAATTTTT	NA	False	NA	NA	False	NA	NA	NA	74557925	74578543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513_74577571_74577632
38654	chr15	-	1528	4	NNC	ENSMUSG00000022329.16	novel	2914	11	NA	NA	-25	-40672	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	124.022399410572	16	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCTCTTCCATAGGATT	NA	False	NA	NA	False	NA	NA	NA	35155921	35113296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_35114366_35114674_35114804_35115710_35115792_35155672
38656	chr19	+	3448	6	Antisense	novelGene_ENSMUSG00000037071.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	167	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCCCAGTGCTGAGATC	5616	False	NA	NA	False	NA	NA	NA	44383986	44395871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_44386557_44388579_44388810_44390127_44390340_44391606_44391721_44394925_44395183_44395806
38657	chr11	-	1252	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-177	-73	177	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
38658	chr2	-	955	1	Intergenic	novelGene_2669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTAGTAGCACGCCTAC	NA	False	NA	NA	False	NA	NA	NA	92264003	92263048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_92263000_92264000
38659	chr2	-	5432	1	NIC	ENSMUSG00000068742.12	novel	3976	12	NA	NA	911	854	mono-exon	FALSE	NA	NA	NA	NA	NA	2	123	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCATTTGTTAGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	92261826	92256394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_92256400_92261800
38660	chr11	+	2226	3	NIC	ENSMUSG00000018286.7	novel	798	6	NA	NA	-3	-19	intron_retention	FALSE	canonical	3	5742	junction_2	139.5	22	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGTTTGTTTTATGTGC	NA	False	NA	NA	False	NA	NA	NA	70416208	70418665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70417252_70417369_70418150_70418262
38661	chr2	+	2698	2	FSM	ENSMUSG00000045822.5	ENSMUST00000052107.5	2708	2	3	7	3	-7	multi-exon	FALSE	canonical	3	86	junction_1	0	67	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCACGTTTGTGTTTTT	3066	False	NA	NA	False	NA	NA	NA	164647020	164664043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164647352_164661676
38662	chr6	+	2468	7	FSM	ENSMUSG00000038301.16	ENSMUST00000179365.8	2464	7	0	-4	0	4	multi-exon	FALSE	canonical	3	50	junction_1	112.931272118144	369	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACTTTGTTCGATTTCT	NA	False	NA	NA	False	NA	NA	NA	51521502	51567654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_51521630_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
38663	chr12	-	1783	13	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-23	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	278.951745627965	197	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87519067	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497184_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
38664	chr17	-	820	2	Fusion	ENSMUSG00000116657.2_ENSMUSG00000062753.15	novel	862	5	NA	NA	1454	8260	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGAGGGGCGTTCCCAA	NA	False	NA	NA	False	NA	NA	NA	27782643	27774286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_27774306_27781842
38666	chr17	+	2225	11	NIC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	-6	-4	intron_retention	FALSE	canonical	3	220	junction_6	28.6532720644606	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATTTCTTTTATTTTGT	9238	False	NA	NA	False	NA	NA	NA	57071771	57076836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075629_57075805_57075903_57076049_57076126_57076249_57076663_57076735
38669	chr4	-	1577	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTCTTTTTGTGTGTGT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41092900_41093084_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
38670	chr8	-	2462	5	ISM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	46069	-80	46069	80	3prime_fragment	FALSE	canonical	3	49	junction_2	2.1650635094611	18	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATCTTTTGCTATTCCA	NA	False	NA	NA	False	NA	NA	NA	127155735	127151987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_127153880_127154161_127154299_127154556_127154682_127154813_127155006_127155619
38673	chr19	-	2084	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-58	-5	at_least_one_novel_splicesite	FALSE	canonical	2	89	junction_1	1058.79500347093	1	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCCATTCATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	15902352	15882498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883511_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
38674	chr3	+	2576	9	NIC	ENSMUSG00000004127.13	novel	588	5	NA	NA	-2	-1541	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	78.3194579909744	132	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCTAAAATTCAGGTTT	NA	False	NA	NA	False	NA	NA	NA	137849619	137864038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_137849757_137852047_137852155_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
38675	chr10	+	2148	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	-14	-7	-14	7	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	238	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGCCTTTCTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	43097467	43316605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
38676	chr17	+	2239	1	Antisense	novelGene_ENSMUSG00000024039.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGGGTGTCAGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	31831618	31833857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_31831600_31833900
38677	chr11	+	4317	1	NIC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	1169	2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	93	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGTCTCAGCCAGAATT	NA	False	NA	NA	False	NA	NA	NA	32177707	32182024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_32177700_32182000
38678	chr7	-	2685	7	FSM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	62	801	-38	-1	multi-exon	FALSE	canonical	3	70	junction_6	23.5141801189552	230	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCGACATCCCTTTCAGT	3224	False	NA	NA	False	NA	NA	NA	45367364	45359691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416_45366488_45367124
38680	chr9	-	1892	15	NIC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	46	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_14	103.740477802514	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	NA	False	NA	NA	NA	66033823	65995414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66033724
38681	chr2	-	1954	7	ISM	ENSMUSG00000038671.16	ENSMUST00000108808.8	1133	8	288	-608	204	-607	3prime_fragment	FALSE	canonical	3	258	junction_2	24.0537592349581	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAGTTAGATGGTGGTTC	6417	False	NA	NA	False	NA	NA	NA	181006856	181000284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397
38683	chr17	+	1949	7	FSM	ENSMUSG00000014767.18	ENSMUST00000118001.8	1652	7	27	-324	9	324	multi-exon	FALSE	canonical	2	10	junction_5	125.630963097832	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAAAGCCTTGAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	15720198	15738013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15735877_15735973_15736965
38684	chr6	-	1380	4	Antisense	novelGene_ENSMUSG00000067338.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGGCATTGCCAATCTG	NA	False	NA	NA	False	NA	NA	NA	145567199	145564017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_145564181_145564456_145564604_145564903_145565596_145566821
38685	chr8	-	1786	9	NNC	ENSMUSG00000031774.9	novel	828	9	NA	NA	-10	717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	229.797975132506	827	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3933	False	NA	NA	False	NA	NA	NA	95328282	95301567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309641_95313949_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95323678_95323737_95328124
38686	chr15	+	1266	9	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	584	-390	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	4438.80483456696	4	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTCTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	103149504	103152992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152213_103152398_103152456_103152682
38687	chr7	-	2675	9	NIC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	6	-3	intron_retention	FALSE	canonical	3	32	junction_7	103.443145616324	14	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCTTGAGTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	105401397	105395128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105399195_105399386_105399538_105401188_105401261_105401377
38689	chr2	-	2263	2	NIC	ENSMUSG00000015335.17	novel	1483	4	NA	NA	62	-2	intron_retention	FALSE	canonical	3	682	junction_1	0	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACCCATGCTGCCGTGG	NA	False	NA	NA	False	NA	NA	NA	29983566	29980964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_29982078_29982416
38690	chr6	-	1362	4	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	1245	junction_3	125.603432366406	7983	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	NA	False	NA	NA	NA	124689102	124681343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124681622_124681901_124682620_124682703_124682806_124688838
38691	chr9	-	4209	15	NIC	ENSMUSG00000042790.17	novel	3294	15	NA	NA	0	1011	combination_of_known_junctions	FALSE	canonical	3	5	junction_12	18.0899114967206	76	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGCTGTTGTCAAGATT	9610	False	NA	NA	False	NA	NA	NA	45817685	45773711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_45776297_45777863_45777960_45778244_45778350_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811508_45811555_45816103_45816218_45817649
38694	chr7	+	1437	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-4	-416	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	2	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTGGCAGAACTCATCC	366	False	NA	NA	False	NA	NA	NA	44465802	44479812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478053_44478622
38695	chr12	+	1596	13	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	-4	-12	intron_retention	FALSE	canonical	3	514	junction_11	176.537688768024	3	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTACTTTACTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	105976537	106041447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
38696	chr9	+	2435	7	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	3	-45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	197.580082217031	1	83	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCTTTCCTTTGAATCA	NA	False	NA	NA	False	NA	NA	NA	20927283	20940068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20927398_20930214_20930471_20936839_20937155_20937607_20937896_20938373_20938630_20938772_20938977_20939066
38697	chr7	+	1994	5	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	29	junction_1	60.6150765074169	50	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	632	False	NA	NA	False	NA	NA	NA	101872272	101887771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101872358_101875477_101875653_101885300_101885762_101886328_101886438_101886607
38698	chr10	+	1446	12	Antisense	novelGene_ENSMUSG00002076354.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCAGAGAGAGCGAGAAGC	3371	False	NA	NA	False	NA	NA	NA	128394636	128401827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128394840_128394929_128394984_128395097_128395224_128395299_128395401_128395947_128396163_128396526_128396605_128396785_128396852_128398695_128398791_128398936_128399001_128399086_128399183_128399442_128399571_128401607
38699	chr2	+	3802	30	NNC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	2850	-7	intron_retention	FALSE	non_canonical	0	0	junction_5	109.052813133448	1	204	19	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGGATGGTGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	180964605	180998400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976706_180976771_180977685_180977973_180980972_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988882_180990967_180991101_180991255_180991359_180991444_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997209_180997346_180997443_180997606_180997716
38700	chr13	+	1740	4	NNC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	419	-3381	intron_retention	FALSE	canonical	0	0	junction_2	726.018518282343	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCATTAAAATGGCTTTC	NA	False	NA	NA	False	NA	NA	NA	92491652	92522180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_92492208_92494434_92494545_92502172_92502300_92521232
38703	chr9	+	2130	12	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-7	-1	intron_retention	FALSE	canonical	0	0	junction_7	1767.66967109687	4	66	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAACTGTGTTGTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	108765774	108778686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776625_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
38705	chr12	-	1431	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	0	-14	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	3	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	111638731	111635794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
38706	chr11	+	3745	4	Genic_Genomic	ENSMUSG00000020829.10	novel	1834	1	NA	NA	1724	11723	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACACTCCAAACTGAGC	2022	False	NA	30	True	NA	NA	NA	78362775	78374608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_78365861_78366033_78366154_78373981_78374173_78374259
38708	chr11	-	1840	12	NNC	ENSMUSG00000020863.16	novel	2050	11	NA	NA	30	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	77.5417775958694	1	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTTGCAGAGTTGATT	NA	False	NA	NA	False	NA	NA	NA	94212754	94181975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515_94212628_94212688
38710	chr2	-	2475	7	NIC	ENSMUSG00000027496.16	novel	1905	9	NA	NA	1476	0	intron_retention	FALSE	canonical	3	1117	junction_4	131.805096006692	1	99	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	False	NA	NA	False	NA	NA	NA	172210950	172198115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172205710_172206361_172206417_172208841_172209092_172210905
38711	chr11	-	2812	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	64	1794	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_1	159.281665262794	2	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAAAAGAGAAGCTGATAG	NA	False	NA	NA	False	NA	NA	NA	95896702	95852467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95853343_95854365_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
38712	chr16	-	2745	14	NNC	ENSMUSG00000003526.13	novel	2386	14	NA	NA	0	-9	intron_retention	FALSE	canonical	0	0	junction_2	54.8805049401443	6	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGTCATCACCTTTCT	8072	False	NA	NA	False	NA	NA	NA	17907027	17889598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17890228_17890313_17890403_17890690_17890779_17891418_17891518_17894105_17894282_17895307_17895455_17895642_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898940_17899394_17899430_17902410_17902620_17906751
38713	chr7	-	3363	4	NNC	ENSMUSG00000035239.7	novel	3341	3	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	2.05480466765633	108	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTGGAGTGAGTTAGAT	6075	False	NA	NA	False	NA	NA	NA	99477574	99460645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99463515_99472528_99472741_99474883_99474956_99477364
38714	chr1	-	2058	6	NNC	ENSMUSG00000026095.16	novel	2442	6	NA	NA	59	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	226.534412396881	42	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGGGTGTAGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	53391852	53383802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53384139_53385738_53385881_53386431_53387718_53389145_53389222_53390038_53390093_53391688
38715	chr16	+	3216	11	NNC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_10	36.5383360321731	5	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGGTTTTACTGTC	NA	False	NA	NA	False	NA	NA	NA	10010811	10060910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10058730
38716	chr7	-	1394	8	ISM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	520	1864	-17	1162	5prime_fragment	FALSE	canonical	3	441	junction_7	122.995603040706	11	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTCCAAGATAGGGTT	NA	False	NA	NA	False	NA	NA	NA	140748619	140742104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
38717	chr7	-	722	2	ISM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	7542	16	6981	-14	3prime_fragment	FALSE	canonical	3	767	junction_1	0	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACTTTGATGGCAAGAAA	NA	False	NA	NA	False	NA	NA	NA	140741060	140740254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_140740479_140740562
38718	chrX	+	1945	1	NIC	ENSMUSG00000031231.5	novel	1001	3	NA	NA	49	1580	mono-exon	FALSE	NA	NA	NA	NA	NA	44	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTACCTTTAAAGACCT	NA	False	NA	NA	False	NA	NA	NA	105059370	105061315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_105059400_105061300
38719	chr12	+	1296	8	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-10	-1684	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1998.52464971293	2	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCTTCCTTCTTGTCAC	NA	False	NA	NA	False	NA	NA	NA	78908848	78932100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908948_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930155_78931705
38720	chr13	-	1501	5	NNC	ENSMUSG00000058672.8	novel	1610	4	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	137.838673818345	5	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATGGTCCTTTTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	34261990	34258260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34259200_34259304_34259512_34260160_34260272_34260531_34260641_34261855
38722	chr5	-	1872	10	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	0	-17	intron_retention	FALSE	canonical	3	14	junction_9	388.340279702616	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAACCCCTTTCCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	24650195	24646057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649394_24650063
38723	chr7	+	1657	4	NIC	ENSMUSG00000030802.15	novel	3405	12	NA	NA	-862	-4	intron_retention	FALSE	canonical	3	550	junction_1	50.4402837246404	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTCTTGGGCCCCAAAT	NA	False	NA	NA	False	NA	NA	NA	127505549	127507776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127506520_127506613_127506704_127507092_127507252_127507338
38724	chr9	-	1095	5	NNC	ENSMUSG00000032040.16	novel	1274	6	NA	NA	-4	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	286.731908757989	54	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTGATTGGTGAGGAC	NA	False	NA	NA	False	NA	NA	NA	35087293	35035722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35036141_35037602_35037732_35047639_35047786_35082372_35082548_35087066
38725	chr15	-	3471	10	NNC	ENSMUSG00000022195.8	novel	3966	9	NA	NA	16	-234	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	104.452836542281	2	111	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAATTTTTTATTATTT	NA	False	NA	NA	False	NA	NA	NA	12824681	12808496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_12809871_12810077_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
38726	chr2	-	1649	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	467.543313501541	4	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	152185913	152179341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179963_152180222_152180608_152181634_152181914_152185020_152185248_152185776
38727	chr2	-	1264	10	NNC	ENSMUSG00000025781.15	novel	1735	10	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	2	77	junction_9	1411.26731418919	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9553	False	NA	NA	False	NA	NA	NA	10085272	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085011
38728	chr8	-	1442	10	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	417.113360557482	520	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85573498	85568719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85568796_85569231_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
38729	chr2	+	1459	11	NIC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	16	-14	combination_of_known_splicesites	FALSE	canonical	2	57	junction_2	578.951846011393	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTACAATCCATGTCTC	8563	False	NA	NA	False	NA	NA	NA	61542053	61630706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_61542218_61550787_61550916_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
38730	chr1	+	4397	7	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	15	-329	intron_retention	FALSE	canonical	1	2	junction_3	43.8915962596739	1	230	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTTTGAGATATCATTC	NA	False	NA	NA	False	NA	NA	NA	173248178	173293269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_173248253_173255324_173255465_173280393_173283089_173287263_173287416_173289472_173289887_173291424_173291614_173292536
38731	chr4	+	1664	6	Antisense	novelGene_ENSMUSG00000028719.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGCCGGCGCGGCGGCGC	NA	False	NA	NA	False	NA	NA	NA	114817947	114844346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_114818955_114820262_114820359_114820552_114820630_114822079_114822232_114826413_114826562_114844162
38732	chr8	+	1467	11	NNC	ENSMUSG00000005481.19	novel	1656	11	NA	NA	-19	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	722.89075938208	6	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGTGAATGCATGGCT	NA	False	NA	NA	False	NA	NA	NA	84441877	84449895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449428_84449555_84449664_84449753
38736	chr2	-	2382	10	NNC	ENSMUSG00000041975.18	novel	2347	10	NA	NA	-32	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	33.5132183245527	199	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGCTTTTGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	70885959	70794907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812546_70823827_70823920_70848563_70848719_70885714
38737	chr3	-	3009	13	NIC	ENSMUSG00000028134.12	novel	3777	14	NA	NA	-9	-261	combination_of_known_junctions	TRUE	canonical	3	6	junction_5	29.4376695560109	106	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAACAAAGTTGGGAGGTT	NA	False	NA	NA	False	NA	NA	NA	119576965	119512651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119519714_119519870_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
38738	chr11	-	2770	13	NNC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	35	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	31.2805406318724	9	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAAGGCACAATCTTGA	NA	False	NA	NA	False	NA	NA	NA	121563944	121507036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121525262_121525314_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
38739	chr6	+	1226	1	NIC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	5021	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	51459458	51460684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_51459500_51460700
38741	chr4	+	2548	13	NNC	ENSMUSG00000028737.16	novel	3382	15	NA	NA	32	-41	intron_retention	FALSE	non_canonical	1	3	junction_12	60.2381846413792	11	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTTTTATGATGGTGC	NA	False	NA	NA	False	NA	NA	NA	139350451	139376957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370760_139375648
38742	chr16	-	1765	3	NNC	ENSMUSG00000044763.9	novel	3002	2	NA	NA	44	-1109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	202	5	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGATTCTTTGAATATCAGA	7430	False	NA	NA	False	NA	NA	NA	55858138	55854080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55854364_55854447_55855655_55857863
38743	chr7	+	1885	8	FSM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	-18	-2	-17	2	multi-exon	FALSE	canonical	3	98	junction_1	68.1968938187848	1860	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATCAGCTTGCTGACA	NA	False	NA	NA	False	NA	NA	NA	141047287	141051388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
38744	chr19	+	2775	2	NNC	ENSMUSG00000108414.2	novel	2728	2	NA	NA	0	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATGCTATTTATTGTGA	NA	False	NA	NA	False	NA	NA	NA	8700850	8703797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8700922_8701093
38745	chr14	+	2113	1	NIC	ENSMUSG00000035960.15	novel	1239	5	NA	NA	22	-27	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	258	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAGAAATAAAAGGCCCT	211	False	NA	NA	False	NA	NA	NA	51162456	51164569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_51162500_51164600
38746	chr2	+	1414	13	NNC	ENSMUSG00000027374.13	novel	718	5	NA	NA	-76	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	512.938179890022	3	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	7110	False	NA	NA	False	NA	NA	NA	127432284	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127432402_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437682_127437756_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
38747	chr9	-	4972	1	Genic_Genomic	ENSMUSG00000031922.13	novel	NA	NA	NA	NA	-277	-8966	mono-exon	FALSE	NA	NA	NA	NA	NA	29	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCACCCCCTACTCCCAA	NA	False	NA	NA	False	NA	NA	NA	13738680	13733708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_13733700_13738700
38749	chr5	+	1923	14	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-5	2813	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_13	74.978971410964	9	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACGGAGGCAGACACACT	9194	False	NA	NA	False	NA	NA	NA	110987860	111017399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111017010
38752	chr9	-	2421	18	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	3	-255	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	692.264230410529	1	102	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTTATTTGTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	36678912	36643976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645735_36646660_36646838_36652784_36652888_36653009_36653117_36654711_36654901_36655291_36655448_36657881_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
38754	chr14	-	1594	10	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAGTACCCGCGCAGCT	NA	False	NA	NA	False	NA	NA	NA	63380275	63359942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63360011_63370760_63370926_63371425_63371498_63373054_63373164_63373853_63373974_63375480_63375566_63375797_63375942_63376445_63376562_63379190_63379311_63379680
38755	chr2	+	2544	13	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	151	968	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1154.60663094503	2	122	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGCCGCCCCGACTCTG	NA	False	NA	NA	False	NA	NA	NA	162901419	162925587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916796_162917555_162917696_162919706_162919814_162921513_162921628_162922637_162922743_162924469_162924620_162925085
38756	chr1	+	2826	2	ISM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	39582	820	6480	-12	3prime_fragment	FALSE	canonical	3	579	junction_1	0	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATTAATAATAATAACAG	2366	False	NA	NA	False	NA	NA	NA	87643542	87647404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87646007_87647042
38757	chr7	-	2809	7	NNC	ENSMUSG00000092574.5	novel	1179	5	NA	NA	33	1383	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	16.9156403629567	66	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTCTCTGTGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	8096007	8087941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8093374_8093465_8095258_8095449_8095759
38758	chr14	+	1703	8	ISM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	11500	2788	-1556	1272	3prime_fragment	FALSE	canonical	3	6334	junction_2	420.491791761475	2	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	795	False	NA	NA	False	NA	NA	NA	63371410	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
38760	chr11	+	2984	23	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	-9	108	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	107.252116664081	1	120	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATCTCCCTTCTTACCCG	NA	False	NA	NA	False	NA	NA	NA	45946809	46034792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030862_46031058_46033745_46033899_46034618
38761	chr6	-	1602	12	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2093.46237780208	4	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446820	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439938_51440041_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
38763	chr10	+	1062	7	Antisense	novelGene_ENSMUSG00000117965.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTCAGCTTCGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	76268853	76278567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_76268975_76269440_76269616_76269818_76269875_76272259_76272516_76272978_76273050_76275975_76276190_76278398
38765	chr15	+	2207	16	Antisense	novelGene_ENSMUSG00000022391.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGATTATGGCGGCGGAGG	188	False	NA	NA	False	NA	NA	NA	81589142	81614072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_81589462_81589654_81589767_81589854_81589950_81590601_81590705_81593687_81593808_81594560_81594758_81595678_81595759_81595841_81595944_81596228_81596342_81597024_81597181_81600768_81600905_81602945_81603127_81604810_81604870_81606101_81606232_81608689_81608834_81613912
38766	chr2	-	5134	8	FSM	ENSMUSG00000034723.12	ENSMUST00000038228.11	5488	8	7	347	-6	-347	multi-exon	FALSE	canonical	3	29	junction_5	5.36808406515884	1	96	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGTTGAAAATATTACTT	2699	False	NA	NA	False	NA	NA	NA	134486058	134436451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_134440786_134441929_134441994_134442807_134442910_134451450_134451497_134462474_134462604_134463307_134463354_134481641_134481758_134485761
38767	chr2	+	282	1	ISM	ENSMUSG00000085028.3	ENSMUST00000127559.2	2976	3	3045	10	2884	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAAATTTTGAGGATTG	NA	False	NA	NA	False	NA	NA	NA	181029087	181029369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_181029100_181029400
38768	chr13	+	2369	16	NIC	ENSMUSG00000057649.7	novel	1111	11	NA	NA	-13	-5	combination_of_known_junctions	FALSE	canonical	2	15	junction_1	48.9185263701005	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAATGTTTTGCTGAGTAC	NA	False	NA	NA	False	NA	NA	NA	74086257	74108927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_74086355_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
38769	chr11	-	2000	10	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.25707872210942	1	66	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGCCGACACCCTCGT	NA	False	NA	NA	False	NA	NA	NA	80287058	80274150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274319_80276725_80276854_80278625_80278765_80279801_80279966_80280076_80280153_80280597_80280648_80282156_80282225_80282657_80282849_80285062_80285347_80286326
38770	chr14	+	1516	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	193	11	93	-11	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACCAGGCACCTCAGCAT	NA	False	NA	NA	False	NA	NA	NA	66043478	66055260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
38772	chr19	+	2069	16	NNC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	5	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	180.781931250517	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTTTGCCAGAATCTCT	NA	False	NA	NA	False	NA	NA	NA	45352254	45517721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515748_45515860_45515896_45517411
38773	chr6	-	1893	11	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	9	1	intron_retention	FALSE	canonical	3	139	junction_9	110.801624536827	211	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGGGACCTGAGCCTGT	7007	False	NA	NA	False	NA	NA	NA	88818839	88812904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
38775	chr17	-	2754	1	ISM	ENSMUSG00000036568.8	ENSMUST00000040624.7	6575	11	30537	3	11309	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTGTCACTGTGATTGT	NA	False	NA	NA	False	NA	NA	NA	47111802	47109048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_47109000_47111800
38778	chr11	-	1440	1	Intergenic	novelGene_2478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACAAAACAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	100479422	100477982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_100478000_100479400
38780	chr12	+	2300	12	FSM	ENSMUSG00000042472.12	ENSMUST00000222606.2	2284	12	-12	-4	0	1	multi-exon	FALSE	canonical	3	6	junction_3	61.2357590123466	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGCTCTTGTTTTA	1849	False	NA	NA	False	NA	NA	NA	84363891	84390498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372376_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
38783	chr3	+	3691	4	ISM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	61955	1853	61858	-853	3prime_fragment	FALSE	canonical	3	38	junction_3	3.39934634239519	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCCTCAACGTTGTACT	NA	False	NA	NA	False	NA	NA	NA	99110338	99125666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_99111933_99112540_99112627_99121971_99122091_99123774
38784	chr10	-	2426	5	NNC	ENSMUSG00000020107.11	novel	1379	5	NA	NA	5	832	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	149.016777578902	1690	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAATGTTTGGCGTGAAT	NA	False	NA	NA	False	NA	NA	NA	59838952	59822398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_59822807_59823059_59824661_59826654_59826730_59832269_59832437_59838777
38785	chr18	-	1720	9	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	6136	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	451.45111515534	13	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60955963	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948133_60949160_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875
38786	chr18	-	6175	3	ISM	ENSMUSG00000042680.9	ENSMUST00000049260.7	4923	6	151554	-2333	151539	2333	3prime_fragment	FALSE	canonical	1	3	junction_2	6	42	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTGAAGTCTTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	21281641	21257924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_21263080_21264389_21264557_21280788
38787	chr9	-	2209	13	NNC	ENSMUSG00000032113.17	novel	3397	13	NA	NA	-14	-166	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	130.406708885019	3	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTAACTCTGAACTTATT	707	False	NA	NA	False	NA	NA	NA	36637895	36620901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625152_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
38788	chr4	+	2418	8	NIC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	-11	360	intron_retention	FALSE	canonical	3	2261	junction_5	115.990675205785	4	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATACTCTTGGGTTAAA	NA	False	NA	NA	False	NA	NA	NA	118478033	118483175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118482883_118483016
38789	chr17	+	3315	21	Antisense	novelGene_ENSMUSG00000077931.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	147	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTCCTCCAGCGGCGCC	NA	False	NA	NA	False	NA	NA	NA	36267731	36280623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36268483_36268569_36268646_36268734_36268801_36268969_36269137_36269219_36269250_36269960_36270032_36270120_36270189_36270318_36270613_36270759_36271098_36271480_36271839_36271928_36272123_36272595_36272716_36272877_36272970_36274006_36274134_36274221_36274284_36274459_36274570_36274644_36274688_36274808_36274939_36275145_36275233_36275968_36276017_36280540
38790	chr7	+	1986	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	7	-1	7	1	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTGAGTTTTCAGACT	NA	False	NA	NA	False	NA	NA	NA	63835135	63861176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
38791	chr15	-	1684	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	79	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1846.06830859532	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAACTGCTTCCACTTAT	-8	True	NA	NA	False	NA	NA	NA	31601807	31590964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595797_31595990_31597556_31597722_31598145_31598207_31601746
38792	chrX	-	2642	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112247.9	2479	15	-31	-132	0	-17	multi-exon	FALSE	canonical	1	3	junction_1	17.508598470699	84	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATCATCAGGAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	163763324	163719181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_163720300_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
38793	chr11	-	2049	16	ISM	ENSMUSG00000020929.15	ENSMUST00000173679.8	2889	27	22846	-189	5353	-135	3prime_fragment	FALSE	canonical	3	1277	junction_11	91.1522292041664	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGCCCAGAGAAGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	102745694	102729437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604
38796	chr8	-	1761	1	Antisense	novelGene_ENSMUSG00000009630.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAATAAATGAAGTAACTT	4374	False	NA	NA	False	NA	NA	NA	34107358	34105597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_34105600_34107400
38797	chr2	+	1604	6	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-10	-9	intron_retention	FALSE	canonical	3	2861	junction_1	902.413342099949	36	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTTGACTGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	26800818	26803321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26800843_26801017_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
38798	chr6	-	1333	8	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	13	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3601.46862900599	1	18	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGTGTAATTATAGACT	NA	False	NA	NA	False	NA	NA	NA	51446851	51439742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441488_51443584_51443688_51443885_51444033_51444167_51444272_51446650
38799	chr12	+	2833	13	NIC	ENSMUSG00000021115.16	novel	2520	14	NA	NA	-19	-25	intron_retention	FALSE	canonical	3	129	junction_11	258.926134361821	1	100	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACATGGATTCCGGT	NA	False	NA	NA	False	NA	NA	NA	105976522	106041643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106037901_106039877_106039938_106041265
38800	chr13	-	1700	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	208.621667139346	967	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTCACAGTTTATTCC	NA	False	NA	NA	False	NA	NA	NA	34314337	34310482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311589_34312318_34312515_34312854_34312966_34313228_34313338_34314159
38801	chr8	-	2104	9	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	8	-4	intron_retention	FALSE	canonical	3	36	junction_8	29.3297523855896	26	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAACTATTCATTGCTAT	NA	False	NA	NA	False	NA	NA	NA	27713848	27687495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
38802	chr8	-	2192	8	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	26	junction_4	32.6271453278539	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTATTCATTGCTATGT	NA	False	NA	NA	False	NA	NA	NA	27713856	27687493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27690260_27690373_27690749_27690932_27692399_27692680_27713715
38803	chr13	+	1986	1	NIC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-25	-4162	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGAGCTAAAATGTCCCG	NA	False	NA	NA	False	NA	NA	NA	49835641	49837627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_49835600_49837600
38804	chrX	+	1012	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	164	2	164	-2	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTGTTTCACGTTAAC	NA	False	NA	NA	False	NA	NA	NA	138234595	138238916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
38805	chr7	-	2909	4	FSM	ENSMUSG00000074093.5	ENSMUST00000098414.5	3053	4	162	-18	-8	18	multi-exon	FALSE	canonical	3	84	junction_2	8.05536398239638	344	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGTGCCTGCCTCCTGTTT	NA	False	NA	NA	False	NA	NA	NA	51655604	51646900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_51649526_51653093_51653208_51653682_51653734_51655485
38807	chr6	-	1874	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	2	0	intron_retention	FALSE	non_canonical	0	0	junction_1	2948.4246641215	3	92	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446823	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440474_51441095_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
38809	chr10	+	3792	2	FSM	ENSMUSG00000019878.9	ENSMUST00000220162.2	2304	2	-1497	9	-1497	-8	multi-exon	FALSE	canonical	3	192	junction_1	0	9	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGTCGAGTACTATTGT	NA	False	NA	NA	False	NA	NA	NA	57384786	57388952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_57387625_57387998
38811	chrX	+	1278	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-43	-25	43	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATATTTCTACTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
38812	chr7	+	1229	7	NNC	ENSMUSG00000063229.16	novel	1277	7	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3021.28082202823	3	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGGCTCTGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	46495267	46505046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500314_46503468_46503531_46504400
38813	chr19	-	1897	15	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-1	437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	592.730903082831	3	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCCCTGGACTGAAT	3912	False	NA	NA	False	NA	NA	NA	5345437	5333705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336964_5337087_5337313_5337567_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
38814	chr18	-	4277	12	FSM	ENSMUSG00000073542.4	ENSMUST00000097542.4	3576	12	134	-835	134	835	multi-exon	FALSE	canonical	3	66	junction_4	9.14800253679584	94	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGAGTCTTGTATTAGT	964	False	NA	NA	False	NA	NA	NA	67774272	67750034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_67752443_67752605_67752824_67756206_67756541_67757999_67758167_67759589_67759779_67762888_67763018_67766520_67766619_67767824_67768011_67770208_67770434_67771335_67771412_67773077_67773234_67774181
38815	chr9	+	3471	17	Antisense	novelGene_ENSMUSG00000031996.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	156	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCCCGTTCGCCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	31060897	31123111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_31062263_31063125_31063280_31063602_31063682_31064707_31064798_31067483_31067522_31068990_31069144_31069794_31069893_31072517_31072652_31073054_31073214_31074641_31074713_31075833_31075970_31080003_31080211_31081731_31081929_31083228_31083340_31088312_31088440_31089203_31089377_31122932
38816	chr6	-	1702	9	NNC	ENSMUSG00000029776.12	novel	1825	8	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	340.254110004567	18	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGGAGCTTTTTGTT	2907	False	NA	NA	False	NA	NA	NA	52617306	52523214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_52523386_52523438_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
38817	chr18	+	1831	5	NIC	ENSMUSG00000037058.17	novel	1569	7	NA	NA	82	-11	intron_retention	FALSE	canonical	3	6	junction_1	1462.74989318065	20	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGTAGAACCGAGCTGGT	5342	False	NA	NA	False	NA	NA	NA	35732371	35750225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35732812_35733097_35733171_35743923_35744088_35746375_35746556_35749251
38818	chr8	+	1852	14	NIC	ENSMUSG00000001909.17	novel	2114	15	NA	NA	-3	172	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	135.61946413865	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCCAGCATTCCGAATTC	NA	False	NA	NA	False	NA	NA	NA	85412964	85425062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85413329_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021
38820	chr17	+	1741	14	ISM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	153	640	-23	-629	5prime_fragment	FALSE	canonical	3	1213	junction_1	74.8124281672773	2	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCCAGGACCAGGATGTG	NA	False	NA	NA	False	NA	NA	NA	21165725	21185538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500
38821	chr17	-	1447	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	137	1065	39	619	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	2	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGGCAGAGAGCCCTGCA	NA	False	NA	NA	False	NA	NA	NA	36149061	36145877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
38823	chr2	-	706	1	Intergenic	novelGene_2556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGACTTCTTTTACTCTG	NA	False	NA	NA	False	NA	NA	NA	5024608	5023902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_5023900_5024600
38824	chr7	+	1951	2	ISM	ENSMUSG00000039018.16	ENSMUST00000036977.9	1595	11	10796	182	-599	157	3prime_fragment	FALSE	canonical	3	514	junction_1	0	26	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAAATCTCTCTCT	8915	False	NA	NA	False	NA	NA	NA	139728272	139730517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_139729774_139730067
38825	chrX	-	3696	11	NNC	ENSMUSG00000031166.14	novel	1749	10	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.9010066774027	57	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGGGCCTCTCTTCAT	6898	False	NA	NA	False	NA	NA	NA	7999070	7989542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7991383_7991486_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623_7997865_7998525_7998606_7999008
38826	chr5	+	978	5	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1830	2698	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCCCTCTAAAGTCAGTT	682	False	NA	NA	False	NA	NA	NA	138162868	138165606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165027_138165305
38827	chr1	+	1294	4	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	29	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	545.968863581065	6	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTCTGGCTGTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	172327840	172334943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_172327900_172332686_172332895_172333327_172333527_172334115
38828	chr5	+	3020	17	FSM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	-13	-77	-13	77	multi-exon	FALSE	canonical	0	0	junction_16	61.5435567301728	196	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACCACAAGATGGGTTTC	7972	False	NA	NA	False	NA	NA	NA	3853170	3891436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
38829	chr9	-	3152	11	FSM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	85	-1	59	1	multi-exon	FALSE	canonical	3	37	junction_3	5.61782876207526	73	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	78495238	78443768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
38831	chr19	+	3313	3	Intergenic	novelGene_1190	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGCGACCGAGAACCCC	856	False	NA	NA	False	NA	NA	NA	4840301	4861627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_4842848_4843698_4844033_4861194
38832	chr11	+	2222	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	262	13	27	-13	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTAACTGAGAGCAAGCC	NA	False	NA	NA	False	NA	NA	NA	76836591	76878192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
38834	chr11	-	951	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	98	2	-2	-2	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTTCTCTTTATTCTG	NA	False	NA	NA	False	NA	NA	NA	115427004	115413929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
38835	chr10	+	2597	11	Antisense	novelGene_ENSMUSG00000020228.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAACCAATCAACTCGACC	NA	False	NA	NA	False	NA	NA	NA	119919971	119948829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_119920877_119925310_119925780_119927512_119927657_119928387_119928594_119930131_119930191_119931004_119931097_119934086_119934242_119937302_119937441_119938670_119938852_119941065_119941110_119948625
38836	chr9	-	1669	12	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	-16	-4	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	91.1213884772205	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAACCCCCTGGTACCA	9791	False	NA	NA	False	NA	NA	NA	57672420	57657998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
38838	chr8	+	2015	3	NNC	ENSMUSG00000045969.9	novel	2814	2	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	224	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTATTTCCTTATG	NA	False	NA	NA	False	NA	NA	NA	11606066	11613251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_11606205_11607002_11607046_11611417
38839	chr14	+	2534	6	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-71	-1889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	226.269220178088	23	27	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52516950	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523313_52529045_52529676_52529976_52530141_52530657
38841	chr11	-	2562	12	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	43	-247	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	454.786263484887	1	140	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAGGCTTTATATTCCAC	NA	False	NA	NA	False	NA	NA	NA	60702048	60679176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680533_60680969_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695227_60697771_60697869_60701729
38842	chr8	+	2943	12	FSM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	29	219	29	-219	multi-exon	FALSE	canonical	3	18	junction_1	79.5842502795747	2	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATCAGGAGTCCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	124170075	124189782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124170185_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
38844	chr1	+	1422	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	17	0	-3	0	multi-exon	FALSE	canonical	3	1389	junction_1	306.215936881149	2047	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7845	False	NA	NA	False	NA	NA	NA	74275672	74307368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
38846	chr12	-	1837	14	NNC	ENSMUSG00000005656.10	novel	1928	14	NA	NA	-4	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	305.491881955689	23	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTTCTTTATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	54842453	54793123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_54793794_54798581_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
38847	chr6	-	1905	9	NNC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	85.1909619619358	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAAATGTGCATGCCTCG	5276	False	NA	NA	False	NA	NA	NA	126916539	126900384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_126901304_126901880_126902083_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
38848	chr6	-	2382	15	FSM	ENSMUSG00000004266.16	ENSMUST00000004377.15	2308	15	-78	4	11	-4	multi-exon	FALSE	canonical	3	18	junction_14	38.4405185889545	34	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAAGTCTGTGCCCCTTG	8931	False	NA	NA	False	NA	NA	NA	124715666	124697673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
38849	chr8	-	1163	6	NNC	ENSMUSG00000033732.11	novel	4525	26	NA	NA	24005	-256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	441.138345646805	1	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCCTGCGTGTGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	111541223	111537126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111537714_111538022_111538128_111538610_111538755_111539597_111539682_111540290_111540468_111541157
38851	chr7	+	1763	13	ISM	ENSMUSG00000066232.5	ENSMUST00000207277.2	3784	21	71	5431	71	-2819	5prime_fragment	FALSE	canonical	0	0	junction_2	227.520496634674	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAAAGAGCTTAGTTGG	7310	False	NA	NA	False	NA	NA	NA	109617592	109645757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368
38852	chrX	-	2072	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	29	6	29	-3	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	284	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTTTATTGCCATTT	NA	False	NA	NA	False	NA	NA	NA	149596674	149589422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
38853	chr6	-	1591	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	-21	-100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5036.30107320839	1	57	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGGGGAGTTTTGACTAA	NA	False	NA	NA	False	NA	NA	NA	87828109	87820163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822284_87822453_87822540_87822637_87822764_87827885
38855	chr5	-	6336	29	ISM	ENSMUSG00000037685.16	ENSMUST00000135930.8	8069	36	71200	1021	589	0	3prime_fragment	TRUE	canonical	3	27	junction_2	6.77819131856135	26	34	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATACTTTGCTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	67933513	67776503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_67780040_67781352_67781445_67788033_67788127_67788829_67788919_67805035_67805144_67805867_67805925_67808930_67808993_67813248_67813328_67817212_67817336_67817436_67817512_67824663_67824775_67824866_67825051_67840100_67840274_67860322_67860388_67863248_67863388_67887134_67887275_67889511_67889597_67895755_67895826_67902922_67902973_67904620_67904704_67906393_67906500_67908355_67908429_67918456_67918546_67919858_67919937_67922206_67922335_67924362_67924529_67926394_67926507_67932065_67932194_67933471
38856	chr11	+	3815	15	NNC	ENSMUSG00000037791.16	novel	4410	15	NA	NA	524	-16	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	34.2661402458307	173	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACTTCAAATTATGTT	NA	False	NA	NA	False	NA	NA	NA	77874151	77921349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_77874204_77874841_77874969_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142
38857	chr1	-	4231	20	NIC	ENSMUSG00000026463.18	novel	4579	21	NA	NA	187	-125	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	6.1926594021401	13	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAAATCTCCACAGCACT	8875	False	NA	NA	False	NA	NA	NA	133681232	133634173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133634735_133639379_133639561_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133665727_133665857_133666275_133666402_133666900_133667159_133667651_133667850_133680826
38858	chr4	-	1964	8	NIC	ENSMUSG00000029022.19	novel	1909	9	NA	NA	2	-5	intron_retention	FALSE	canonical	3	219	junction_7	24.6915667665654	94	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTTCCTGTCTCCATG	NA	False	NA	NA	False	NA	NA	NA	147952938	147945252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
38859	chr4	-	1623	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	9	False	NA	NA	False	NA	NA	NA	41098173	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093402_41093533_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
38860	chrX	+	1804	13	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-4	30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1302.16768793424	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATAAAGTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	161543393	161561782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543482_161543546_161543648_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554148_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
38861	chr3	+	2022	9	FSM	ENSMUSG00000028199.19	ENSMUST00000192462.6	2505	9	478	5	-8	-5	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	14	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAAGCCCTTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	154302825	154328812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
38862	chr6	-	2568	16	Antisense	novelGene_ENSMUSG00000038279.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	122	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACACCGCGAAAGTGAATC	NA	False	NA	NA	False	NA	NA	NA	125121711	125108871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_125108961_125109164_125109280_125110479_125110527_125110675_125110765_125111509_125111693_125113873_125113928_125114027_125114179_125114273_125114472_125114595_125114683_125116597_125116712_125116785_125116902_125117498_125117633_125117750_125117841_125117996_125118124_125118239_125118461_125120958
38863	chr19	+	1362	9	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	1190	302	15	-302	3prime_fragment	FALSE	canonical	3	8704	junction_3	383.621700865579	6	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAACTTTTTCCTGTCCTG	2033	False	NA	NA	False	NA	NA	NA	8945594	8955541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
38864	chr13	-	2520	4	NNC	ENSMUSG00000097333.8	novel	2656	4	NA	NA	-12	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.5612821717283	1	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAGTAAAGTCATTCCT	9266	False	NA	NA	False	NA	NA	NA	67674252	67663926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67666167_67668744_67668841_67669311_67669439_67674195
38865	chr17	+	2421	17	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	43	225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	682.081301857594	1	97	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAATGCTGGTCTGACTCA	NA	False	NA	NA	False	NA	NA	NA	71923252	71965198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923462_71932413_71932486_71933767_71933890_71937155_71937268_71938999_71939137_71940618_71940736_71945303_71945476_71947228_71947316_71948294_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
38866	chr10	+	2229	4	ISM	ENSMUSG00000019891.16	ENSMUST00000218582.2	2795	10	79107	2	79107	0	3prime_fragment	FALSE	canonical	3	177	junction_2	7.54247233265651	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCTGACTTCTATTTG	NA	False	NA	NA	False	NA	NA	NA	52188839	52197472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_52188998_52190450_52190501_52193127_52193248_52195571
38867	chr10	-	2873	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	-137	-1542	-137	1542	mono-exon	FALSE	NA	NA	NA	NA	NA	1	101	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATACTGAGATTTAAAAAAA	2325	False	NA	NA	False	NA	NA	NA	41931439	41928566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41928600_41931400
38868	chr2	-	3468	20	Antisense	novelGene_ENSMUSG00000033059.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	101	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGTCTCTGGCGCCAAG	NA	False	NA	NA	False	NA	NA	NA	150673351	150628717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_150629029_150643455_150643552_150648108_150648189_150650713_150650818_150653170_150653277_150655300_150655421_150655853_150655924_150656905_150657044_150657532_150657629_150658669_150658818_150659560_150659718_150660765_150660879_150661791_150661893_150662651_150662803_150665895_150665953_150668246_150668389_150669022_150669237_150670367_150670496_150671544_150671609_150672279
38869	chr16	+	1993	9	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGCCGGATGTGACGC	5620	False	NA	NA	False	NA	NA	NA	22064631	22084676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065615_22065937_22066011_22067185_22067248_22067799_22067886_22069615_22069730_22071355_22071545_22073156_22073327_22073737_22073867_22084489
38872	chr15	-	999	6	NNC	ENSMUSG00000011960.13	novel	2015	3	NA	NA	-15	-2544	intron_retention	FALSE	canonical	3	14	junction_1	12.5123938556936	32	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGGATGGTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	98465576	98449076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98449521_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
38873	chrX	+	3397	18	NIC	ENSMUSG00000031351.16	novel	3557	19	NA	NA	12	-40	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	19.1768314653882	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTTACACAGCAGTAT	NA	False	NA	NA	False	NA	NA	NA	72030977	72075109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
38874	chr11	+	2345	20	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	4865	2544	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	115.152698814753	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCATGCCCCCTGCACCT	NA	False	NA	NA	False	NA	NA	NA	45951749	46031019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022615_46025299_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832
38875	chr2	+	3085	17	NNC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	-4	-193	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	57.7510822409416	2	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAGTAAGAAGAGTAAATT	NA	False	NA	NA	False	NA	NA	NA	132658056	132685622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132658386_132658993_132659166_132659624_132659973_132661519_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
38876	chr7	+	3342	4	NNC	ENSMUSG00000058402.15	novel	2537	4	NA	NA	-8	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.1334630345285	67	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGTTTTATCTGGAAATG	NA	False	NA	NA	False	NA	NA	NA	29559395	29576725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29559519_29560438_29560494_29572316_29572359_29573603
38877	chr5	+	605	1	Intergenic	novelGene_687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTCTCTCTCCCAGGGT	NA	False	NA	NA	False	NA	NA	NA	32774759	32775364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_32774800_32775400
38878	chr6	+	2303	11	FSM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	-2	1400	-2	-1400	multi-exon	FALSE	canonical	3	59	junction_4	6.96347614342147	242	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTGTGTGATTATTATA	NA	False	NA	NA	False	NA	NA	NA	49013546	49033716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_49013727_49019700_49019854_49020930_49021075_49022238_49022413_49024227_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
38879	chr17	+	1490	10	ISM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	25	342	-7	-311	5prime_fragment	FALSE	canonical	3	2129	junction_1	121.76845057549	1	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	35460746	35472341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182
38880	chrX	-	1791	5	NIC	ENSMUSG00000031167.17	novel	1183	7	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	391	junction_1	351.99884587879	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATACTGATAATGCTTTT	6528	False	NA	NA	False	NA	NA	NA	8011969	8008601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009195_8009485_8009991_8010086_8010187_8010811_8011312_8011876
38881	chr18	+	1138	4	ISM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	2	1266	2	-1012	5prime_fragment	FALSE	canonical	3	833	junction_3	58.1969835033474	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAATTTTATTAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	34464199	34468386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509
38882	chr7	-	3795	17	NNC	ENSMUSG00000001248.16	novel	3722	18	NA	NA	38	0	intron_retention	FALSE	canonical	0	0	junction_15	93.7759963956662	21	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	4737	False	NA	NA	False	NA	NA	NA	30851456	30829551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30851261
38883	chr1	+	2559	16	ISM	ENSMUSG00000026083.13	ENSMUST00000027252.8	7797	24	150	10218	31	-79	5prime_fragment	FALSE	canonical	3	450	junction_9	63.3391576269284	11	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCACTTTCGTGTCCTTGG	1439	False	NA	NA	False	NA	NA	NA	38037240	38084442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404
38884	chr10	+	3425	8	NNC	ENSMUSG00000020260.10	novel	2290	9	NA	NA	-10	-2	intron_retention	FALSE	canonical	0	0	junction_5	48.2366614744852	37	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAAAGCTGCAGTCCTA	NA	False	NA	NA	False	NA	NA	NA	77095141	77105401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101655_77101796_77102746_77102928_77103017
38885	chr5	+	1484	11	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	6	98	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	739.28692670708	11	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCACTCG	8081	False	NA	NA	False	NA	NA	NA	145051073	145064996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060606_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630_145064823_145064885
38886	chr6	-	1922	14	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	22	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	184.974586452129	11	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3515	False	NA	NA	False	NA	NA	NA	125168544	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150052_125164048_125164116_125166725_125166872_125168460
38888	chr8	+	1794	4	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCGCCGGCGCCACCA	NA	False	NA	NA	False	NA	NA	NA	43748104	43758878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43749573_43753663_43753745_43757514_43757600_43758718
38889	chr8	+	1783	11	NNC	ENSMUSG00000019139.11	novel	1836	11	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	125.801589815073	1	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCTCCTTGTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	71047131	71049936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047912_71048050_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
38890	chr11	+	2686	17	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	13.6358901432946	245	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGTGTGGATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	119246389	119271899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119246466_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
38891	chr18	-	2516	11	Antisense	novelGene_ENSMUSG00000024590.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	218	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGCGGGGGGCGGAGGT	NA	False	NA	NA	False	NA	NA	NA	56886494	56840877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_56841210_56861470_56861628_56862356_56862483_56864039_56864211_56866281_56866408_56872890_56873113_56873754_56873982_56876279_56876388_56881048_56881167_56882768_56882879_56885675
38892	chr9	-	2602	4	NIC	ENSMUSG00000032299.11	novel	1941	7	NA	NA	8	-3	intron_retention	FALSE	canonical	3	898	junction_3	131.141992596659	54	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAATGTGTATGGGTCTTG	6300	False	NA	NA	False	NA	NA	NA	57065592	57062327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57062565_57062695_57062873_57063185_57063840_57064058
38893	chr14	-	1525	4	ISM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	37	232	3	-232	intron_retention	FALSE	canonical	3	896	junction_2	71.6147098483731	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGACAAAGGTCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	20438941	20434937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367
38894	chr17	+	1546	5	NNC	ENSMUSG00000046711.17	novel	917	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2352.70688516441	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	27775626	27782643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778645_27779949_27779986_27780434_27780478_27781411
38895	chr3	+	3296	6	NNC	ENSMUSG00000105355.2	novel	369	3	NA	NA	9429	48952	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	66	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCCTCCCAGGACCCGC	2176	False	NA	NA	False	NA	NA	NA	104910776	104960273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_104913445_104915263_104915374_104918510_104918739_104939967_104940077_104946180_104946304_104960215
38896	chr18	+	1547	2	Genic_Genomic	ENSMUSG00000058625.7	novel	1355	1	NA	NA	-95	161	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAGAAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	82356491	82358102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_82356862_82356925
38897	chrX	-	2323	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	-29	-207	-29	207	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	211	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAATTGTACGTATTTA	NA	False	NA	NA	False	NA	NA	NA	161671472	161639845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
38898	chr9	+	1655	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	891.204145189174	3	80	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1178	False	NA	NA	False	NA	NA	NA	108437667	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440529_108440619_108440711_108440797_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
38899	chr11	-	2876	21	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	181.228109022855	1	133	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTCTGATAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	106146632	106139966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145607_106145659_106146145_106146252_106146410_106146504_106146586
38900	chr5	-	1593	9	FSM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	26	7	26	-2	multi-exon	FALSE	canonical	3	231	junction_8	116.165560731225	1279	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGGGATCGTGTCTGAG	4049	False	NA	NA	False	NA	NA	NA	137609723	137603371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
38901	chr15	+	1223	2	ISM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	1023	0	684	0	3prime_fragment	FALSE	canonical	3	1292	junction_1	0	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	5168	False	NA	NA	False	NA	NA	NA	80140407	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_80140723_80140834
38902	chr2	-	2294	9	FSM	ENSMUSG00000002109.15	ENSMUST00000111352.8	2228	9	-47	-19	-25	4	multi-exon	FALSE	canonical	3	65	junction_7	15.7594217850783	147	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCCAAAAGCCCAACA	3047	False	NA	NA	False	NA	NA	NA	91067277	91041928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
38903	chr3	-	3611	8	NNC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	-17	-239	intron_retention	FALSE	canonical	3	21	junction_4	112.779720278614	443	62	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTGTTGGGGACTGAAC	3720	False	NA	NA	False	NA	NA	NA	89319194	89308549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313230_89314715_89314864_89315728_89316474_89318464_89318688_89319090
38904	chr4	+	3419	27	NNC	ENSMUSG00000043411.16	novel	3392	11	NA	NA	731	10	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	336.414843230144	2	33	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACGTGTTTCAGATTTT	1322	False	NA	NA	False	NA	NA	NA	137322269	137383652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137322521_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
38906	chr1	-	3409	10	Antisense	novelGene_ENSMUSG00000041684.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGCCGCGATGAATGATT	NA	False	NA	NA	False	NA	NA	NA	44183654	44159015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_44159433_44165423_44166025_44166795_44166929_44167891_44167984_44168419_44168523_44168740_44168837_44176142_44176275_44177730_44177818_44180932_44181033_44182006
38907	chr13	+	3316	6	Intergenic	novelGene_1374	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGCGCGAGGCGGCAGGG	387	False	NA	NA	False	NA	NA	NA	55221048	55248095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_55223810_55224116_55224221_55225215_55225343_55233424_55233510_55240941_55241093_55248007
38908	chr15	+	1874	8	Antisense	novelGene_ENSMUSG00000018169.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	339	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTCAGCCCTCCCTCCG	NA	False	NA	NA	False	NA	NA	NA	78640081	78657678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_78640845_78641496_78641578_78643383_78643559_78645005_78645092_78648512_78648671_78651019_78651125_78651345_78651393_78657219
38909	chr14	+	4094	20	NNC	ENSMUSG00000084925.9	novel	485	3	NA	NA	-3151	70263	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	67	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATAGCTACAGGGAGCCA	NA	False	NA	NA	False	NA	NA	NA	20611662	20691018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20612311_20614935_20615121_20615997_20616129_20620315_20620489_20623840_20623969_20626539_20626773_20627002_20627380_20627521_20627654_20631523_20631698_20631903_20631960_20633387_20633559_20636067_20636218_20638142_20638290_20638400_20638507_20639251_20639335_20639441_20639555_20641545_20641684_20654121_20654211_20657147_20657974_20690984
38910	chr12	-	1895	13	NNC	ENSMUSG00000021190.15	novel	1835	13	NA	NA	1546	2	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_12	132.695348658329	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCTTTGTGGTTTGTG	9903	False	NA	NA	False	NA	NA	NA	102388482	102360340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102388239
38912	chrX	+	3562	22	NNC	ENSMUSG00000031153.17	novel	2867	24	NA	NA	2	-4	intron_retention	FALSE	canonical	0	0	junction_16	21.0070714797231	9	62	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGACTGTCTGGTCTCA	3262	False	NA	NA	False	NA	NA	NA	7656235	7686798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7656308_7658308_7658376_7658514_7658577_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678804_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7685561_7686240
38914	chr11	+	1935	11	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	360.013333086429	6	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	98573390	98586804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581383_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
38915	chr19	+	1412	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	155	297	155	-297	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	4	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	998	False	NA	NA	False	NA	NA	NA	8944559	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
38917	chr17	-	2887	7	NNC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	204.007080487146	547	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	NA	False	NA	NA	NA	28637488	28618070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637414
38918	chr11	-	1276	3	ISM	ENSMUSG00000020415.17	ENSMUST00000020685.10	634	5	541	963	277	921	internal_fragment	FALSE	canonical	3	9157	junction_1	311	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTCTGTAGTTCAGCG	NA	False	NA	NA	False	NA	NA	NA	43316513	43312820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_43313814_43315545_43315725_43316409
38919	chr11	-	1070	1	NIC	ENSMUSG00000020415.17	novel	741	6	NA	NA	1641	2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATATGTTCAGATTGTGA	NA	False	NA	NA	False	NA	NA	NA	43312172	43311102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_43311100_43312200
38921	chr2	+	2886	16	ISM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	96	2	14	-2	3prime_fragment	FALSE	canonical	3	1260	junction_6	129.702223059848	1	158	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGATGTCCTTATGTC	NA	False	NA	NA	False	NA	NA	NA	84867890	84877448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
38922	chr17	-	848	3	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGCAGAAACAGTAAAAT	3054	False	NA	NA	False	NA	NA	NA	29261076	29259746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29259786_29260178_29260267_29260355
38923	chr3	+	2761	1	ISM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	132840	2	81036	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCAGTAGTGTCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	145597269	145600030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_145597300_145600000
38924	chr4	-	1066	5	Genic_Genomic	ENSMUSG00000096221.4	novel	2183	1	NA	NA	850	27441	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1036	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGAGCGGTGTGAGCCG	NA	False	NA	NA	False	NA	NA	NA	155818234	155789560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_155789916_155799915_155800063_155815781_155815920_155816381_155816503_155817929
38925	chr4	+	2788	5	FSM	ENSMUSG00000073988.14	ENSMUST00000098244.2	3053	5	-50	315	21	0	multi-exon	FALSE	canonical	3	28	junction_1	18.1934053986603	90	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTGTTTATATTTTTC	388	False	NA	NA	False	NA	NA	NA	20008377	20030470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_20008644_20014630_20014785_20021191_20021386_20023784_20023896_20028407
38926	chr1	-	3810	9	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	28	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.2294265253357	2	123	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTAGTGGGGGTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	171854807	171828531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171829639_171831466_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
38927	chr5	-	1593	10	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	40	472	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	580.274988025845	7	7	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	NA	False	NA	NA	NA	117527047	117517209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518831_117518869_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
38930	chr1	+	2349	17	Intergenic	novelGene_420	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACGCTTGACCTCCCCCC	4127	False	NA	NA	False	NA	NA	NA	93347813	93406528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_93348013_93348808_93348939_93349066_93349147_93350977_93351098_93351489_93351596_93352987_93353129_93355279_93355359_93355869_93355973_93357097_93357208_93357818_93358029_93358678_93358890_93359026_93359243_93364817_93365034_93365949_93366106_93368401_93368517_93369910_93369976_93406436
38931	chr11	-	2015	1	FSM	ENSMUSG00000018293.5	ENSMUST00000177669.2	1997	1	744	-762	734	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	70544690	70542675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70542700_70544700
38932	chr12	-	2674	13	Antisense	novelGene_ENSMUSG00000004789.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	118	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCGGATACAGGGCCCGG	7005	False	NA	NA	False	NA	NA	NA	85180849	85157640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_85157778_85165131_85165180_85165296_85165374_85165553_85165606_85166002_85166118_85168759_85168911_85169550_85169630_85170546_85170644_85175082_85175201_85176553_85176639_85177228_85177317_85177668_85177837_85179390
38933	chr9	+	3587	23	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	3	-7	combination_of_known_junctions	FALSE	canonical	3	36	junction_22	56.9185477184737	1	138	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACAGAGACTGACCTGGT	6633	False	NA	NA	False	NA	NA	NA	21232046	21266314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296_21264469_21264977
38936	chr11	-	1811	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	2946	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	991.971632159037	1	72	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGACGGCTGAAAATTC	8147	False	NA	NA	False	NA	NA	NA	88843345	88814849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88832100_88832183_88834622_88834698_88835200_88835254_88835299_88835357_88837970_88838061_88843231
38937	chr9	-	1488	7	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-24	-51	intron_retention	FALSE	canonical	3	198	junction_6	113.861636305747	39	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGGCCATGCCTCACG	NA	False	NA	NA	False	NA	NA	NA	106315425	106312345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106312724_106312813_106312904_106312982_106313060_106313324_106314000_106314087_106314153_106314827_106314937_106315331
38939	chr10	-	2616	5	NNC	ENSMUSG00000062931.16	novel	2124	4	NA	NA	-25	283	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	55.6012589785519	222	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGGGTACTTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	82077139	82060400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_82062428_82063278_82063426_82063632_82063760_82072440_82072621_82077004
38940	chr19	+	1860	6	Antisense	novelGene_ENSMUSG00000024799.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTCTTGTTCATTGAT	458	False	NA	NA	False	NA	NA	NA	6113401	6117856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_6113481_6113559_6113638_6113851_6114020_6114107_6114227_6116335_6117059_6117163
38941	chr9	+	3818	7	FSM	ENSMUSG00000042787.16	ENSMUST00000164213.5	2571	7	1	-1248	1	-31	multi-exon	FALSE	canonical	3	15	junction_2	23.8706002345051	111	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATAAATCCTTCCCGA	NA	False	NA	NA	False	NA	NA	NA	119274026	119294552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119274217_119274352_119274388_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
38942	chr3	-	1824	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	545.731596305924	1	86	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	NA	False	NA	NA	NA	98247240	98220485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241950_98246988
38944	chr8	-	336	1	ISM	ENSMUSG00000096188.2	ENSMUST00000179802.2	7734	4	43361	3920	43361	-3920	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGAGAAGTTCTGCTTA	NA	False	NA	NA	False	NA	NA	NA	105079078	105078742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_105078700_105079100
38945	chr3	-	1376	9	ISM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	11650	0	273	0	3prime_fragment	FALSE	canonical	3	1070	junction_1	271.702962810493	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	NA	False	NA	NA	NA	98235656	98220485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604
38946	chr5	-	2387	17	NNC	ENSMUSG00000041740.17	novel	3112	17	NA	NA	-185	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	393.757618973906	615	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGCCGCCTTCCCGACA	NA	False	NA	NA	False	NA	NA	NA	115410545	115379833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395233_115398177_115398209_115410460
38947	chr19	+	2238	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-4	-4	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	24.5063257139866	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACGACGGATTCCTGGA	4345	False	NA	NA	False	NA	NA	NA	5074174	5081988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5074306_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
38949	chr2	+	2337	14	NNC	ENSMUSG00000000194.14	novel	6134	18	NA	NA	-2	-1637	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_13	125.749539742944	35	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	31042342	31080488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31079438
38950	chr2	-	1710	12	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	47	-5	intron_retention	FALSE	canonical	3	250	junction_9	28.194425332585	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCTTGTCTAGTAGGAT	9110	False	NA	NA	False	NA	NA	NA	25246262	25242306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
38951	chr12	+	2551	4	NNC	ENSMUSG00000037957.15	novel	2384	3	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	63.1682057859982	238	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5373	False	NA	NA	False	NA	NA	NA	110704452	110761462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110704712_110708563_110708758_110745729_110745913_110759547
38952	chr11	+	555	1	ISM	ENSMUSG00000042569.14	ENSMUST00000108718.2	3277	7	28938	24	28938	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATTAACCCTCTCAGCT	NA	False	NA	NA	False	NA	NA	NA	60750442	60750997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_60750400_60751000
38953	chr4	-	1559	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	29	0	29	0	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	675	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	12	True	NA	NA	False	NA	NA	NA	21767183	21757381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
38954	chr4	-	1646	12	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	549.159989634056	2	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	8861	False	NA	NA	False	NA	NA	NA	129436453	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412633_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
38956	chr10	+	1303	7	ISM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	103	6539	34	2024	intron_retention	FALSE	canonical	3	3777	junction_3	142.177119584458	1	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATTAGTGACTAAGAAAAC	2155	False	NA	NA	False	NA	NA	NA	61484433	61503408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689
38957	chr8	+	1546	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	25	-5	25	-4	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	3270	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGCTTTGTTTTAAA	5259	False	NA	NA	False	NA	NA	NA	34222094	34267197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
38958	chr8	-	1515	13	ISM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	25	2755	25	-2645	5prime_fragment	FALSE	canonical	3	3119	junction_9	146.271342222445	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGTGAGTCACAGTCAT	NA	False	NA	NA	False	NA	NA	NA	26337697	26309658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
38959	chrX	-	2100	4	NNC	ENSMUSG00000031431.14	novel	1552	4	NA	NA	1223	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	110.816164083685	55	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	NA	NA	NA	139500185	139440276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_139441857_139442853_139442906_139498876_139499308_139500148
38960	chr7	+	2751	10	Intergenic	novelGene_3035	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	89	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTCGAGCTAGAGGCGGA	3451	False	NA	NA	False	NA	NA	NA	126626916	126635052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_126627015_126627104_126628149_126628506_126628675_126630102_126630274_126631798_126631937_126632053_126632562_126632637_126632846_126633045_126633205_126633294_126633430_126634930
38961	chr17	-	2133	17	FSM	ENSMUSG00000005823.10	ENSMUST00000233568.2	2405	17	-7	279	-7	30	multi-exon	FALSE	canonical	3	119	junction_12	26.3293443708726	388	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCGGAGCCCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	57554679	57541913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
38962	chr11	-	2434	11	NNC	ENSMUSG00000005949.10	novel	2570	11	NA	NA	-9	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	25.7635401294154	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTACACTCGGAACGTT	4477	False	NA	NA	False	NA	NA	NA	73089856	73074428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_73075878_73076063_73076182_73077060_73077115_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
38963	chr11	-	929	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	419	-5	-42	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAAACTCCCTGCCTCTTC	9936	False	NA	NA	False	NA	NA	NA	69812217	69807964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
38964	chr3	+	2395	4	FSM	ENSMUSG00000028102.16	ENSMUST00000118557.8	2424	4	40	-11	-30	11	multi-exon	FALSE	canonical	3	279	junction_3	9.46337971105226	565	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCAAAATTTGTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	96542785	96552693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890
38965	chr12	-	1777	5	NNC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-22	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.119915773218	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008997	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76985307_76985479_76985530_76986740_76986865_76999942_77000051_77008763
38967	chr18	+	2908	12	NIC	ENSMUSG00000019143.16	novel	3336	13	NA	NA	-6	171	intron_retention	FALSE	canonical	3	111	junction_7	14.63664596001	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGCAGAGGACCTGAGT	NA	False	NA	NA	False	NA	NA	NA	36916315	36924918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36923304_36923521_36923669_36924122
38968	chr14	+	3072	10	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	-3	-1889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	172.544429776546	5	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52517018	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657_52530735_52530862
38969	chr2	+	728	4	ISM	ENSMUSG00000026856.15	ENSMUST00000156059.8	767	6	-137	843	37	316	intron_retention	FALSE	canonical	3	314	junction_1	24.7969532178631	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCACGTGCTGTCTCTA	NA	False	NA	NA	False	NA	NA	NA	30282302	30286484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164
38971	chr16	-	1602	13	FSM	ENSMUSG00000058240.15	ENSMUST00000073466.13	1965	13	362	1	-5	-1	multi-exon	FALSE	canonical	1	405	junction_2	358.43629334777	683	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCACTCTGAATTTCTCCG	9190	False	NA	NA	False	NA	NA	NA	91525501	91486210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
38972	chr11	-	4849	19	FSM	ENSMUSG00000020919.12	ENSMUST00000004143.3	5062	19	206	7	20	-7	multi-exon	TRUE	canonical	3	41	junction_6	7.16386680880661	54	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAATATTGAGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	100741344	100671563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100674049_100674497_100674603_100675078_100675131_100678034_100678206_100679194_100679326_100679492_100679588_100681572_100681780_100685369_100685463_100687244_100687368_100687443_100687532_100687889_100688070_100688471_100688628_100689059_100689212_100689416_100689548_100692232_100692408_100693264_100693355_100695695_100695853_100699221_100699360_100741224
38973	chr1	+	1506	11	NNC	ENSMUSG00000006304.15	novel	1439	11	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	685.104145367695	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7872	False	NA	NA	False	NA	NA	NA	74275699	74307368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74275765_74275860_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
38974	chr3	+	2005	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	234	6	234	-6	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	1399	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGATTCTGACTAATTCT	NA	False	NA	NA	False	NA	NA	NA	87813861	87823433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
38975	chr2	+	1231	6	NIC	ENSMUSG00000062647.17	novel	914	8	NA	NA	57	-6	intron_retention	FALSE	canonical	3	4686	junction_5	287.579832394415	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26801074	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801139_26801433_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
38976	chr2	+	2261	19	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-109	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	993.650620467554	1	88	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGTGTTGATGGAGCCT	NA	False	NA	NA	False	NA	NA	NA	157121236	157167972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132625_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144393_157152132_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157164321_157164363_157165142_157165191_157167630
38978	chr5	-	2655	18	NNC	ENSMUSG00000036693.13	novel	2702	18	NA	NA	42	-3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_17	161.182438704447	1	88	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCAAGGCTGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	34817450	34795882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815352_34817194
38979	chr19	+	767	6	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	49	5852	49	-9	5prime_fragment	FALSE	canonical	3	5201	junction_1	1472.44889894353	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTGATGGTAAGTCTGAA	892	False	NA	NA	False	NA	NA	NA	8944453	8949991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870
38981	chr1	-	1968	15	ISM	ENSMUSG00000042772.16	ENSMUST00000111836.4	3928	23	119	7111	95	-55	5prime_fragment	FALSE	canonical	3	190	junction_1	33.1866244263608	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCTGTAGTTAACACACT	NA	False	NA	NA	False	NA	NA	NA	152778278	152721731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
38982	chr5	-	1767	12	NNC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	-21	165	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	189.916728163592	14	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAAAGCCACGGGGTCAG	NA	False	NA	NA	False	NA	NA	NA	121731666	121705775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121706087_121708744_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
38983	chr8	-	2268	4	Fusion	ENSMUSG00000004996.10_ENSMUSG00000019362.9	novel	616	3	NA	NA	-2474	1	multi-exon	FALSE	canonical	0	0	junction_3	854.068433375739	5705	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTGTGTGCTGTTTGGTG	7360	False	NA	NA	False	NA	NA	NA	84978822	84972865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_84973323_84976102_84976159_84976244_84976719_84977541
38984	chr4	-	1996	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	257	0	intron_retention	FALSE	canonical	2	4	junction_7	42.0500188065672	15	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2288	False	NA	NA	False	NA	NA	NA	116664488	116661198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664409
38985	chr4	-	3441	3	NIC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-1279	24	intron_retention	FALSE	canonical	3	684	junction_1	31.5	3	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGCGTGGCAGGTAAGT	6020	False	NA	NA	False	NA	NA	NA	155835079	155830499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155833666_155834588_155834714_155834929
38986	chr1	-	2527	10	FSM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	4	2	4	-2	multi-exon	FALSE	canonical	3	38	junction_3	13.0705587551887	156	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACTGTTGTCTCCTGTAA	NA	False	NA	NA	False	NA	NA	NA	130390477	130366765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
38987	chrX	-	3557	8	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGCCGCTGGCTGGCGGG	NA	False	NA	NA	False	NA	NA	NA	84187950	84091917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_84092065_84097575_84097633_84133416_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84185443_84187633
38989	chr11	+	3521	23	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	3	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	37.8460343239498	2	67	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGACTTTGGCCTGTGACC	NA	False	NA	NA	False	NA	NA	NA	96941648	96959720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96941780_96943054_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951374_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
38990	chr4	-	4977	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	101	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.0078105935821	23	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGAGCAGTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	135161033	135139618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135143910_135145690_135145863_135147556_135147731_135152524_135152754_135160922
38991	chr2	-	1465	12	NNC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	-11	-1	intron_retention	FALSE	canonical	0	0	junction_8	237.70427491749	30	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATACTATCTGGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	130126365	130121237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125668_130125750_130125857_130125957_130126090_130126169_130126301
38995	chr2	+	1529	13	NNC	ENSMUSG00000027374.13	novel	718	5	NA	NA	-96	131	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	602.375090786463	15	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACATGGTATATAGCTGTG	7090	False	NA	NA	False	NA	NA	NA	127432264	127445906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127432322_127432614_127432702_127433733_127433872_127436363_127436490_127437278_127437377_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
38996	chr14	-	3096	4	NNC	ENSMUSG00000023243.10	novel	3392	5	NA	NA	67	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	58.6912827144429	16	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGGTATGTTTG	NA	False	NA	NA	False	NA	NA	NA	20231810	20190124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20192526_20194702_20194872_20195023_20195063_20231323
38997	chr7	-	2088	17	NNC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-1061	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	347.010424014899	1	60	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTACTGGCTGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	44188903	44182177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184131_44184436_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785
38998	chr11	+	4244	6	Antisense	novelGene_ENSMUSG00000086646.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	67	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGCCCGTCTCTCTTTCCC	NA	False	NA	NA	False	NA	NA	NA	51074445	51111243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_51077851_51080755_51081137_51089400_51089544_51104871_51105044_51110286_51110383_51111196
38999	chr8	+	3250	7	NIC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	-242	-8	intron_retention	FALSE	canonical	3	424	junction_1	48.9810053887105	42	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGACTTAATGTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	43633335	43646910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_43633650_43636158_43636403_43636739_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
39000	chr4	+	3231	13	FSM	ENSMUSG00000042228.15	ENSMUST00000041377.13	3463	13	9	223	-3	-222	multi-exon	FALSE	canonical	3	29	junction_2	7.08823359911026	201	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAGTATCATTTCAAA	2	True	NA	NA	False	NA	NA	NA	3678123	3791390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_3678365_3738724_3738862_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
39001	chr11	-	5872	13	ISM	ENSMUSG00000020715.10	ENSMUST00000001059.9	6946	22	68821	13	68821	-13	3prime_fragment	FALSE	canonical	2	5	junction_11	4.76969600708473	19	40	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAGATTTGGGAGTTGC	4734	False	NA	NA	False	NA	NA	NA	106309801	106285488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106289581_106290597_106290666_106291020_106291145_106294273_106294402_106296547_106296696_106297866_106298067_106298321_106298422_106298885_106299076_106299715_106299807_106300720_106300989_106302448_106302641_106305176_106305296_106309649
39002	chr12	+	3138	9	NNC	ENSMUSG00000032705.10	novel	3310	9	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	70.0214252925489	1	99	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTCAAAGCACAAAGCTC	2788	False	NA	NA	False	NA	NA	NA	80509993	80544880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537899_80538005_80539315_80539673_80543554
39003	chr4	-	1546	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTTTGTGTGTGTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093391_41093608_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
39004	chr14	+	1894	3	NIC	ENSMUSG00000035960.15	novel	1239	5	NA	NA	-7	0	intron_retention	FALSE	canonical	3	716	junction_1	252	16	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	172	False	NA	NA	False	NA	NA	NA	51162417	51164596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_51162487_51162669_51163811_51163912
39005	chr2	-	1014	6	Antisense	novelGene_ENSMUSG00000065124.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGTTGCCTCCTCCGAGC	NA	False	NA	NA	False	NA	NA	NA	32854038	32851759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_32851851_32852059_32852132_32852583_32852682_32852993_32853593_32853747_32853864_32854000
39006	chr11	-	2726	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	184	903	184	-903	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	2	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCAAGGCCTTCTTAT	8711	False	NA	NA	False	NA	NA	NA	86698388	86660574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
39007	chr15	-	1198	9	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	61	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	12802.7240363135	4	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACTGGTTTTCCCACAT	4402	False	NA	NA	False	NA	NA	NA	79966723	79961997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965231_79965815_79965983_79966590
39008	chr8	-	1841	9	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38809	-1	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_7	57.3389047680543	290	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	43633332	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43618053_43618097_43633233
39009	chr2	+	2260	20	ISM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	114	434	-3	-390	5prime_fragment	FALSE	canonical	3	666	junction_12	60.6004123112968	2	27	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGAGAGGGAACTTCAAA	NA	False	NA	NA	False	NA	NA	NA	166857226	166876433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392
39010	chr17	-	1878	15	NNC	ENSMUSG00000059208.16	novel	2428	17	NA	NA	7973	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	829.561477467438	1	61	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	7686	False	NA	9	True	NA	NA	NA	33896372	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33868632_33868837_33869372_33871246_33871306_33877361_33877440_33877843_33877887_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33896283
39011	chr11	-	2978	2	NNC	ENSMUSG00000007777.10	novel	813	2	NA	NA	22	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	7	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5206	False	NA	NA	False	NA	NA	NA	51579458	51576212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51577868_51578135
39012	chr1	-	1768	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	26	1355	0	230	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGATTTTGTATTTTGGG	NA	False	NA	NA	False	NA	NA	NA	134289691	134275189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
39013	chr13	-	1765	4	FSM	ENSMUSG00000069206.15	ENSMUST00000075255.6	3238	4	-2	1475	-2	347	multi-exon	FALSE	canonical	3	47	junction_1	29.1699998095456	184	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGAGCTTACATTCCA	9936	False	NA	NA	False	NA	NA	NA	67599745	67590026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67591454_67596939_67597036_67597468_67597596_67599630
39014	chr6	-	666	2	Genic_Genomic	ENSMUSG00000084319.4	novel	519	1	NA	NA	-97	197	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAATTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	99855392	99854579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_99854793_99854939
39015	chr6	+	3104	3	FSM	ENSMUSG00000052751.17	ENSMUST00000118229.2	3138	3	34	0	-15	0	multi-exon	FALSE	canonical	3	41	junction_2	5	68	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTGGTGGTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	48570858	48576016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48570987_48571724_48571911_48573226
39016	chr13	-	2894	22	FSM	ENSMUSG00000021758.15	ENSMUST00000099166.10	3012	22	112	6	-62	-6	multi-exon	FALSE	canonical	3	36	junction_3	9.06389513461723	100	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCTAAGTTTTCCAACAG	NA	False	NA	NA	False	NA	NA	NA	112788897	112734874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777762_112781042_112781101_112787865_112787953_112788809
39017	chr12	-	3494	12	NNC	ENSMUSG00000021238.12	novel	3399	12	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	67.1150486259685	3	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	84497757	84477490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484844_84486186_84486632_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
39018	chr9	+	2021	15	NIC	ENSMUSG00000032872.17	novel	2644	16	NA	NA	-18	-10	combination_of_known_splicesites	FALSE	canonical	3	36	junction_14	224.417534056136	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTTTACTCCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	86904121	86959424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86958880
39019	chr2	+	1298	1	Genic_Genomic	ENSMUSG00000039356.16	novel	NA	NA	NA	NA	1996	228	mono-exon	FALSE	NA	NA	NA	NA	NA	10	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGGTTTCTGATGCTC	NA	False	NA	NA	False	NA	NA	NA	31570291	31571589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_31570300_31571600
39020	chr3	-	2491	16	ISM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	14123	10	-1522	-10	3prime_fragment	FALSE	canonical	3	313	junction_11	47.0874363993907	377	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAATTTGCTTTTGAGTC	NA	False	NA	NA	False	NA	NA	NA	101497877	101483544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762
39022	chr16	-	3567	8	FSM	ENSMUSG00000005251.16	ENSMUST00000019386.10	3591	8	21	3	21	-3	multi-exon	FALSE	canonical	3	41	junction_1	9.512612465478	48	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCGCAGACTATTATTT	NA	False	NA	NA	False	NA	NA	NA	97564966	97543135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_97545445_97547059_97547325_97548492_97548597_97549222_97549382_97551292_97551343_97552693_97552843_97556267_97556560_97564727
39023	chr15	+	1204	12	ISM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	-8	9369	-8	7	5prime_fragment	FALSE	canonical	3	1573	junction_6	130.8457548805	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGTGAGCTTAGACTT	NA	False	NA	NA	False	NA	NA	NA	84076433	84092099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033
39024	chr3	-	3553	19	NNC	ENSMUSG00000027889.18	novel	3586	19	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	78.6163720265524	1	144	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107993932	107981377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983669_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988438_107993527_107993669_107993754
39025	chr4	-	2277	7	NNC	ENSMUSG00000028622.12	novel	1498	7	NA	NA	4	966	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	230.404535545635	12	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATCTTAAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	106924061	106912104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_106913302_106914568_106914704_106917793_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
39026	chrX	-	1955	9	NIC	ENSMUSG00000031134.17	novel	2019	9	NA	NA	80	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	19.0028780714922	2	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGAAGCTGCAAACCGAT	NA	False	NA	NA	False	NA	NA	NA	56438242	56431717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
39027	chr3	-	3280	10	Antisense	novelGene_ENSMUSG00000105272.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	355	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTGCCGAGCGCCAGGC	4192	False	NA	NA	False	NA	NA	NA	106482142	106455282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_106456301_106457813_106457992_106459471_106459594_106462476_106462621_106469060_106469131_106473358_106473498_106478005_106478187_106478926_106479010_106480288_106480379_106480887
39028	chr4	-	1254	4	NIC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-12	-7	intron_retention	FALSE	canonical	3	14010	junction_1	2293.58191482232	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCATTGGCTTTCATTA	NA	False	NA	NA	False	NA	NA	NA	86775661	86772903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_86773193_86774103_86774251_86774382_86775097_86775557
39030	chr5	-	2888	23	FSM	ENSMUSG00000029705.18	ENSMUST00000176745.8	2831	23	-57	0	-43	0	multi-exon	FALSE	canonical	3	74	junction_13	14.4244970693081	138	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	NA	False	NA	NA	NA	136596175	136276988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355787_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
39031	chr3	-	2156	12	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	290.435352901254	3	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	157737159	157716555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717609_157717942_157718086_157718416_157718511_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727701_157728512_157728588_157732361_157732496_157737088
39033	chr11	+	1591	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	-1	36	-1	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTGGACAGTCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653618	120655209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120655200
39034	chr5	-	2427	11	NNC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	14	0	intron_retention	FALSE	canonical	0	0	junction_8	128.184866501471	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	NA	False	NA	NA	NA	34794519	34790989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792872_34792948_34793851_34793937_34794128_34794270
39035	chr8	-	4042	13	FSM	ENSMUSG00000031974.9	ENSMUST00000075578.7	4306	13	264	0	264	0	multi-exon	FALSE	canonical	3	39	junction_3	9.48536885008813	105	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCTGTGTGTTATGA	7141	False	NA	NA	False	NA	NA	NA	124709597	124679197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_124681315_124681461_124681497_124682511_124682556_124685237_124685419_124686948_124687029_124688734_124688945_124689731_124689828_124691729_124691866_124693204_124693352_124694739_124694875_124696458_124696662_124697709_124697911_124709140
39036	chr9	+	1551	13	ISM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	14596	5	14596	-5	3prime_fragment	FALSE	canonical	3	1100	junction_7	87.814988596607	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAATGAGTTTGGGTTGCT	NA	False	NA	NA	False	NA	NA	NA	59461418	59472387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
39037	chr6	-	1235	8	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2478.47532954913	1	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGTGTAATTATAGACT	NA	False	NA	NA	False	NA	NA	NA	51446754	51439742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440179_51442178_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
39038	chr18	-	4220	10	NNC	ENSMUSG00000003778.15	novel	3869	21	NA	NA	15815	-1	intron_retention	FALSE	non_canonical	0	0	junction_7	242.404671348054	21	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAACTCTGGCCTTTGGTG	9760	False	NA	NA	False	NA	NA	NA	34741791	34732883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739727_34739822_34740097_34740545_34740827_34741109_34741470
39039	chr10	+	2109	10	NNC	ENSMUSG00000001786.15	novel	5388	9	NA	NA	-84	-4	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_4	100.668628874671	627	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATGGCAGACTTGACTT	NA	False	NA	NA	False	NA	NA	NA	85857751	85884183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85868823_85869015_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
39041	chr11	+	4690	3	Antisense	novelGene_ENSMUSG00000018848.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	114	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTAGTTTGGGCCGGAAAC	7462	False	NA	NA	False	NA	NA	NA	35715174	35725352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_35719641_35723998_35724136_35725265
39042	chr14	-	473	3	FSM	ENSMUSG00000043681.6	ENSMUST00000052126.6	408	3	-74	9	-74	-9	multi-exon	FALSE	canonical	3	2248	junction_2	168.5	8076	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAACAGAGTCCTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	34077464	34073846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_34074035_34075654_34075718_34077242
39045	chr14	-	2584	14	NNC	ENSMUSG00000022031.7	novel	2771	15	NA	NA	24	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	207.062806696808	1	101	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTTAACATAAAAGAGTC	3493	False	NA	NA	False	NA	NA	NA	65830475	65767912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65768947_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800707_65800828_65802760_65802923_65815373_65815562_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
39046	chr6	-	1682	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	56	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1112.46167556093	3	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTGTGTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	83294479	83282964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286529_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294404
39048	chr1	-	1989	6	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	162	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	419.874933760042	3	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCAGGATTTCGCCCT	NA	False	NA	NA	False	NA	NA	NA	119432362	119398045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_119399372_119399498_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
39049	chr7	+	2475	18	NNC	ENSMUSG00000038563.15	novel	3610	20	NA	NA	2	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	34.6068377346599	68	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAACTTCCAAACCGTTTG	NA	False	NA	NA	False	NA	NA	NA	82297838	82427050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347117_82412388_82412623_82421664_82421850_82426698
39050	chr9	+	1789	16	NNC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	294.007664299192	10	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21914308	21925518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917833_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21923577_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
39051	chr8	-	1928	6	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	238.891942099352	5	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGTCTCAGACTTTTTTT	9736	False	NA	NA	False	NA	NA	NA	123939508	123931005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_123932328_123932947_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123939379
39052	chr5	+	1805	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50937	0	-210	0	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	438	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5174	False	NA	NA	False	NA	NA	NA	8899122	8916315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
39055	chr2	-	1743	12	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	2	-1	intron_retention	FALSE	canonical	3	252	junction_8	26.779479006653	896	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTCTAGTAGGATCCAT	9031	False	NA	NA	False	NA	NA	NA	25246341	25242302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245966_25246040_25246155_25246242
39059	chr11	-	2001	1	Antisense	novelGene_ENSMUSG00000084941.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTCTACCAAGTGAGTT	4647	False	NA	NA	False	NA	NA	NA	3261753	3259752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_3259800_3261800
39061	chr3	-	1295	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199014.5	1280	6	-11	-4	0	0	multi-exon	FALSE	canonical	3	1706	junction_4	119.761429517186	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7190	False	NA	NA	False	NA	NA	NA	89906004	89902759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
39063	chr3	-	2671	10	Antisense	novelGene_ENSMUSG00000065431.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	106	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGGAGCCGCGGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	157254015	157240016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_157240110_157241969_157242022_157242112_157242224_157243223_157243306_157246269_157246345_157246689_157246825_157247334_157247501_157248787_157248879_157250597_157250758_157252309
39064	chr9	-	1079	8	Fusion	ENSMUSG00000060461.6_ENSMUSG00000032346.8	novel	619	3	NA	NA	180	-15	multi-exon	FALSE	canonical	1	3	junction_4	62606.604114054	11	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTGATTAAAATGTGC	NA	False	NA	NA	False	NA	NA	NA	78285827	78274348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_78274577_78274796_78274849_78275002_78275186_78275266_78275383_78277829_78277889_78284907_78284974_78285256_78285440_78285635
39065	chr14	+	2525	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	35.7694573852142	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGTCTGTGTCACTTT	NA	False	NA	NA	False	NA	NA	NA	55797955	55807522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55798085_55798692_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
39066	chr15	+	1598	4	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	281	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	635.924698547102	74	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCACGCCAGCATTCTTT	NA	False	NA	NA	False	NA	NA	NA	100513510	100518636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100515935_100517381
39067	chr17	-	1773	11	NIC	ENSMUSG00000001524.15	novel	1679	14	NA	NA	515	-4	intron_retention	FALSE	canonical	3	150	junction_7	13.9154590294392	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATGGAAAAAAATCTACGC	NA	False	NA	NA	False	NA	NA	NA	35983675	35978636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35981151_35981256_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577
39068	chr17	-	923	2	FSM	ENSMUSG00000024170.16	ENSMUST00000143390.2	425	2	-255	-243	-255	-4	multi-exon	FALSE	canonical	3	105	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGACACACAGGCTGCTTC	NA	False	NA	NA	False	NA	NA	NA	25320655	25318554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25319095_25320272
39069	chr7	-	1155	1	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTCACACCGACCTTCACC	NA	False	NA	NA	False	NA	NA	NA	51397621	51396466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51396500_51397600
39070	chr1	-	1951	17	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCACGTTGCTCAGCCG	NA	False	NA	NA	False	NA	NA	NA	59750633	59724200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729722_59731495_59731546_59731765_59731884_59735131_59735257_59737479_59737622_59740045_59740108_59741973_59742106_59743220_59743366_59743777_59743908_59744749_59744914_59745789_59745926_59746164_59746222_59748162_59748290_59749650_59749812_59750429_59750470_59750533
39071	chr14	-	1473	1	NIC	ENSMUSG00000114575.2	novel	378	3	NA	NA	5926	-18	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGTTGTCTCTGGAGC	1208	False	NA	NA	False	NA	NA	NA	24490545	24489072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_24489100_24490500
39072	chr17	+	2957	13	NNC	ENSMUSG00000042345.16	novel	2539	13	NA	NA	-35	314	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	10.119768881858	86	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACACTTCGCTCAGGTCG	NA	False	NA	NA	False	NA	NA	NA	31431051	31461378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_31431334_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456910_31458149_31458260_31460214
39073	chr7	+	2921	3	FSM	ENSMUSG00000006024.14	ENSMUST00000132828.2	476	3	-35	-2410	-5	-1415	multi-exon	FALSE	canonical	3	1229	junction_2	60	12	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCCAGGCAGCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	15832527	15845644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_15832700_15841477_15841558_15842975
39075	chr11	-	1476	10	NNC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	922.356456094261	4	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACCCATTGTCACTGCTG	3747	False	NA	NA	False	NA	NA	NA	120463699	120451132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120451410_120451846_120452087_120452986_120453074_120453187_120453219_120454514_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
39077	chr11	-	2637	12	NNC	ENSMUSG00000000384.16	novel	2324	13	NA	NA	-266	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	230.948171352881	1	103	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGGGCCACTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	6575725	6565600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575343
39078	chr10	+	3491	8	NNC	ENSMUSG00000020260.10	novel	2290	9	NA	NA	-10	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	58.1103805402323	262	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGCAGTCCTAGAAATGG	NA	False	NA	NA	False	NA	NA	NA	77095141	77105408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77095288_77096407_77096659_77098270_77098407_77099087_77099210_77100789_77100857_77101669_77101867_77102746_77102928_77103017
39079	chr7	-	2630	2	ISM	ENSMUSG00000025466.20	ENSMUST00000155777.8	408	3	109	-1694	9	0	3prime_fragment	FALSE	canonical	3	483	junction_1	0	21	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1615	False	NA	NA	False	NA	NA	NA	139682210	139679382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139681316_139681513
39080	chr9	-	3125	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	-8	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	92.4712567954677	1	128	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTTATGGAGACTTT	6396	False	NA	NA	False	NA	NA	NA	44272949	44259393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260393_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265281_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
39081	chr11	-	2289	11	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	292.506478560732	1	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8492	False	NA	NA	False	NA	NA	NA	69572710	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571615_69572488
39084	chr13	-	1326	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.944400230224	2	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311455_34311601_34312101_34312333_34312515_34312854_34312966_34313228_34313338_34314159
39085	chrX	+	1771	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	3	83	3	-83	multi-exon	FALSE	canonical	3	454	junction_1	42	758	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCTGTGTTTAATGGT	1671	False	NA	NA	False	NA	NA	NA	35861861	35869649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_35862268_35865773_35865930_35868440
39086	chr14	+	2486	9	NNC	ENSMUSG00000002326.7	novel	545	3	NA	NA	-749	2620	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCGCGCGGCTTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	55913664	55919277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55914741_55916972_55917063_55917322_55917387_55917470_55917914_55918067_55918167_55918253_55918362_55918458_55918547_55918681_55918766_55918843
39087	chr1	+	2211	15	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	320.892322521218	1	57	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3126	False	NA	NA	False	NA	NA	NA	171910457	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910520_171940711_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948996_171949266
39088	chr10	-	3087	6	NIC	ENSMUSG00000000901.18	novel	2288	8	NA	NA	80	-2	intron_retention	FALSE	canonical	3	207	junction_2	13.0690474021636	4	109	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCGCCTGTCTGTTTTTC	5163	False	NA	NA	False	NA	NA	NA	75768229	75759058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75759950_75761253_75761512_75762244_75762824_75762962_75763097_75763180_75764344_75768167
39089	chr7	-	3500	4	Antisense	novelGene_ENSMUSG00000030779.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGAGTCCTCTGTGATC	NA	False	NA	NA	False	NA	NA	NA	122601134	122596217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_122596529_122596815_122596919_122597745_122599507_122599809
39090	chr15	-	2734	11	FSM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	-671	0	-135	0	multi-exon	FALSE	canonical	3	24	junction_5	124.203099800287	4	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	7995	False	NA	NA	False	NA	NA	NA	76501719	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
39093	chr14	+	1717	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	39	6	-13	-3	multi-exon	FALSE	canonical	3	2255	junction_1	40	3	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACACACGTGTTTCTATA	6578	False	NA	NA	False	NA	NA	NA	76741956	76745199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
39095	chr11	+	3313	18	ISM	ENSMUSG00000020893.18	ENSMUST00000021271.14	4671	23	4	3666	4	-2	5prime_fragment	FALSE	canonical	3	10	junction_1	5.84636047433339	79	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGATTCTTCCCCG	NA	False	NA	NA	False	NA	NA	NA	68989777	68997120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_68989835_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215
39096	chr1	+	2331	4	ISM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	38	3	0	-3	intron_retention	FALSE	canonical	3	315	junction_1	76.4475128583149	58	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGCTGTGACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	37469257	37478062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242
39097	chr11	+	2243	5	FSM	ENSMUSG00000062421.14	ENSMUST00000057921.10	2242	5	-10	9	-10	-9	multi-exon	FALSE	canonical	3	72	junction_4	7.43303437365925	218	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTAGACATGGTCATGT	NA	False	NA	NA	False	NA	NA	NA	103857554	103876154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_103857654_103859904_103860072_103863778_103863890_103872519_103872645_103874413
39098	chr12	+	1488	4	FSM	ENSMUSG00000021040.16	ENSMUST00000161023.8	2701	4	16	1197	0	1085	multi-exon	FALSE	canonical	3	3495	junction_2	126.36015546401	29	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAAGCTGGATCTGAAT	NA	False	NA	NA	False	NA	NA	NA	87490681	87497779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87490797_87494333_87494393_87496062_87496171_87496573
39101	chr10	+	561	4	NNC	ENSMUSG00000063457.15	novel	500	4	NA	NA	29	-17	at_least_one_novel_splicesite	FALSE	canonical	3	409	junction_1	3639.28063709788	79	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCAAGTAGCCGAGGCCAA	6371	False	NA	NA	False	NA	NA	NA	80128315	80129904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80128452_80128608_80128695_80129475_80129711_80129800
39102	chr5	-	1478	4	ISM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	69	7428	69	-7428	5prime_fragment	FALSE	canonical	3	1197	junction_3	154.559589371435	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTATCCTGATGACTGCC	NA	False	NA	NA	False	NA	NA	NA	24782396	24777770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24778775_24779164_24779378_24781516_24781726_24782344
39103	chr14	-	1568	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-4938	-3	intron_retention	FALSE	canonical	3	15	junction_9	112.089690718782	59	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGAAGTGTGCACCGTT	NA	False	NA	NA	False	NA	NA	NA	59607857	59586183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607693
39104	chrX	+	2994	22	NNC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	53	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	104.828333917108	1	106	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTCTACTTTCTC	610	False	NA	NA	False	NA	NA	NA	20484076	20517128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515584_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
39105	chr17	+	3241	18	FSM	ENSMUSG00000002365.11	ENSMUST00000002436.11	3331	18	90	0	67	0	multi-exon	FALSE	canonical	3	159	junction_6	26.0644662593364	117	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGCAGATTCCCAAAGTA	NA	False	NA	NA	False	NA	NA	NA	5891693	5982229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_5891822_5937271_5937359_5940349_5940425_5942048_5942175_5949601_5949771_5952638_5952790_5955163_5955249_5958628_5958755_5958856_5958975_5968654_5968786_5970345_5970450_5970844_5970949_5972404_5972483_5974879_5974957_5976346_5976437_5977480_5977596_5978479_5978572_5980844
39106	chr9	+	3018	9	FSM	ENSMUSG00000034563.17	ENSMUST00000085350.11	2969	9	-54	5	-27	-5	multi-exon	FALSE	canonical	3	41	junction_8	47.1963981676568	38	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGGTCTCTCTCAAGTC	NA	False	NA	NA	False	NA	NA	NA	72892832	72923277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613
39107	chr13	-	2026	17	NNC	ENSMUSG00000021646.10	novel	2123	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	2	51	junction_3	69.7078725826574	3	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTAGGGTTGTTGAGAT	669	False	NA	NA	False	NA	NA	NA	100152147	100085039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100085465_100088663_100088750_100090643_100090759_100091220_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
39109	chr15	-	2338	3	FSM	ENSMUSG00000058600.14_ENSMUSG00000065899.3	ENSMUST00000140527.2	388	3	37	-1987	0	-24	multi-exon	FALSE	canonical	3	3551	junction_2	1055.5	33	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTTGCCAGAGCTCCT	361	False	NA	NA	False	NA	NA	NA	34443368	34440679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34442927_34443170_34443224_34443330
39110	chr17	+	2001	9	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	3	-18	intron_retention	TRUE	canonical	3	87	junction_2	86.7564839075443	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGCCTGAGACCATTGT	NA	False	NA	NA	False	NA	NA	NA	15720176	15737671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15720287_15721415_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
39111	chr16	+	2198	2	Genic_Genomic	ENSMUSG00000092029.2	novel	661	1	NA	NA	-20	1808	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAAAAAAGATAA	NA	False	NA	NA	False	NA	NA	NA	61197598	61200087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_61199669_61199959
39112	chr17	-	2318	9	NNC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	-11	-1209	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	150.202311483545	8	39	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAAGCCTATGGTGACCG	NA	False	NA	NA	False	NA	NA	NA	53996325	53983022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_53983740_53983934_53984060_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
39113	chr7	-	3732	25	NIC	ENSMUSG00000078671.12	novel	9085	39	NA	NA	2	5978	combination_of_known_junctions	FALSE	canonical	2	3	junction_20	15.0323724748365	4	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGAGGCAGGCCCAGAGG	NA	False	NA	NA	False	NA	NA	NA	73191491	73118345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_73118380_73119305_73119477_73121544_73121638_73122759_73122857_73124253_73124403_73125091_73125242_73128406_73128479_73130148_73130302_73130708_73130872_73134156_73134346_73140226_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224_73169457_73190519_73190653_73190993
39114	chr4	+	2189	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	597	5	NA	NA	47	1	multi-exon	TRUE	non_canonical	0	0	junction_2	17.8437664185564	1	109	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	973	False	NA	NA	False	NA	NA	NA	145237407	145351912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145343687_145343750_145347136_145347255_145348721_145349433_145350527_145351516_145351690
39115	chr19	-	1919	10	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	266.796820089514	1	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8412	False	NA	NA	False	NA	NA	NA	43512949	43488190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488568_43488611_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
39116	chr5	-	3457	5	FSM	ENSMUSG00000061898.11	ENSMUST00000165318.4	3480	5	21	2	21	-1	multi-exon	FALSE	canonical	1	1	junction_4	15.5724115023974	31	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCTGTTTATGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	143166509	143157942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165398_143166303
39117	chrX	+	1207	3	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-25	68	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13068914_13068966_13069474_13069516
39118	chr11	-	2053	9	NNC	ENSMUSG00000014606.15	novel	770	6	NA	NA	-3933	-1420	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCTGCCCTGTTTACAAA	NA	False	NA	NA	False	NA	NA	NA	70542238	70538160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70538778_70538853_70538940_70539243_70539416_70540043_70540177_70540272_70540357_70540498_70540843_70540950_70541044_70541587_70541619_70541745
39120	chr6	+	1401	10	NNC	ENSMUSG00000052738.15	novel	1519	9	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	611.053633660644	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAACTTGGCTGTGAAGA	2585	False	NA	NA	False	NA	NA	NA	73225634	73253884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_73225737_73226204_73226367_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
39122	chr14	-	4192	24	NNC	ENSMUSG00000022021.15	novel	4582	28	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.9103712662495	1	192	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGACGTATGTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	87378559	86892803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_86894019_87066427_87066597_87072416_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328628_87378433
39123	chr11	+	1684	15	NIC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	2	57	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	359.20998917977	14	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAAGCTGTGCTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	80319442	80362792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80319582_80322530_80322633_80329076_80329202_80329346_80329457_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
39125	chr5	+	2898	15	NNC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	37.1247208468856	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATGTCTGCAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	143846819	143868262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143850487_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865116_143865759_143865861_143865998_143866169_143867833
39126	chr18	+	2614	8	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26633	-15626	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	473.351101515696	1	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACCCTCACCAGAAGCA	6452	False	NA	-70	True	NA	NA	NA	77126270	77219007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184942_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745
39127	chr12	-	3709	9	Antisense	novelGene_ENSMUSG00000012076.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCCGGCCTCAGCCTCAC	NA	False	NA	NA	False	NA	NA	NA	55915587	55883160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_55883429_55888353_55888447_55891180_55891306_55892065_55892152_55906876_55906970_55907869_55907957_55908174_55908238_55909916_55909959_55912735
39128	chr4	+	2558	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	48	5	-34	-4	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	203	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATTCTATGTGCCTTTT	16	False	NA	NA	False	NA	NA	NA	59581610	59618684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
39129	chr7	-	4293	19	FSM	ENSMUSG00000043671.15	ENSMUST00000051377.15	8006	19	35	3678	-20	1882	multi-exon	FALSE	canonical	3	11	junction_12	3.52591814502721	42	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTATTTAAATAGTT	NA	False	NA	NA	False	NA	NA	NA	35453844	35388267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35390368_35392201_35392361_35394706_35394840_35402913_35402997_35406805_35406863_35407484_35407597_35407959_35408083_35411285_35411445_35411569_35411644_35413550_35413653_35416011_35416144_35420969_35421105_35422131_35422256_35424715_35424862_35426714_35426837_35429110_35429202_35449164_35449299_35452039_35452182_35453679
39130	chrX	-	5114	34	Antisense	novelGene_ENSMUSG00000025862.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	50	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTTCGGGATTGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	41365041	41238224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_41238560_41290729_41290872_41294922_41295001_41299952_41300118_41306209_41306307_41309852_41309925_41312119_41312320_41313799_41313955_41315663_41315738_41317085_41317210_41317998_41318098_41318193_41318276_41322747_41322858_41323523_41323633_41325163_41325282_41325825_41325931_41335841_41335936_41336055_41336144_41336724_41336929_41338879_41338951_41339206_41339295_41339395_41339476_41341927_41342021_41342550_41342726_41345728_41345870_41346900_41347003_41348229_41348379_41349478_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358381_41360116_41360200_41364139
39131	chr11	-	1933	10	ISM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	6085	13	-919	-13	3prime_fragment	FALSE	canonical	3	208	junction_2	23.5251375929118	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACCCAAGGACACATTT	NA	False	NA	NA	False	NA	NA	NA	75075260	75068481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993
39132	chr15	+	2205	7	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	22	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	141.705876926666	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTTTCGGAATGCAAAAC	NA	False	NA	NA	False	NA	NA	NA	100125721	100159127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100125964_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158219
39133	chr10	+	3847	15	ISM	ENSMUSG00000020042.16	ENSMUST00000105307.8	5788	17	174817	0	-36770	0	3prime_fragment	TRUE	canonical	3	31	junction_1	6.30192714288937	72	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCATCCTCTTTATGGT	NA	False	NA	NA	False	NA	NA	NA	85397494	85496156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_85397574_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
39134	chr15	+	1305	11	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	1	-382	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	5955.85543478013	2	31	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	103148881	103153000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149621_103149872_103150020_103150329_103150475_103150632_103150726_103150806_103150900_103151070_103151113_103151454_103151508_103152051_103152208_103152385_103152456_103152682
39135	chr10	-	2317	13	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	9308	-3	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	15.99717857068	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCATTGAGCTTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	42344968	42188586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42344855
39136	chr8	+	2204	13	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-2	1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_9	80.1271125566538	34	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGCTCAGTGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	122677316	122752917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122750741_122750886_122752302
39137	chr10	+	1955	5	NIC	ENSMUSG00000020265.17	novel	1874	4	NA	NA	29	2	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	587.132172087342	102	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGGCCTATGTTAAACAC	NA	False	NA	NA	False	NA	NA	NA	77442433	77453258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_77442803_77445645_77445775_77449813_77449886_77451760_77451869_77451981
39138	chr3	-	2770	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	-106	-5	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	7.5809679052325	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTATTTCTTTTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	79749142	79719875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79748973
39139	chr11	+	2465	12	NNC	ENSMUSG00000017499.16	novel	4614	12	NA	NA	-9	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	322.533386060989	1	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCGTTTGTCTGGGCTGC	7	False	NA	NA	False	NA	NA	NA	98798665	98812714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803082_98804700_98804841_98805928_98806015_98807779_98807867_98810072_98810217_98811498_98811640_98811941
39140	chr11	+	2482	3	FSM	ENSMUSG00000036275.14	ENSMUST00000109057.8	2472	3	-10	0	-10	0	multi-exon	FALSE	canonical	3	140	junction_1	2	120	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCTGTTAGTGTGTT	4548	False	NA	NA	False	NA	NA	NA	52287244	52299555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52287431_52293872_52294385_52297771
39142	chr13	+	2990	14	Antisense	novelGene_ENSMUSG00000116016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	133	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGTCTCAGTCCCAAAAT	NA	False	NA	NA	False	NA	NA	NA	111562691	111626363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111563186_111570081_111570182_111572930_111573116_111574489_111574657_111575637_111575762_111577166_111577352_111579856_111579940_111584428_111584490_111585465_111585534_111589557_111589769_111589898_111590031_111603384_111603504_111623955_111624907_111626253
39143	chr2	+	2888	14	FSM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	312	1	-50	-1	multi-exon	FALSE	canonical	3	195	junction_1	49.9501526672271	28	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTGGCTGTTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	91480516	91502670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91480598_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
39144	chr9	+	1640	10	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	8	-1	intron_retention	FALSE	canonical	3	766	junction_8	68.2725113238786	4	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799588	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
39145	chr1	+	3221	16	NIC	ENSMUSG00000026289.16	novel	3344	18	NA	NA	11	1	intron_retention	FALSE	canonical	3	160	junction_8	19.8422668955832	93	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGCGTCTTGATTG	7336	False	NA	NA	False	NA	NA	NA	87683825	87720145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
39147	chr5	+	4750	9	NNC	ENSMUSG00000029636.12	novel	5196	10	NA	NA	315	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	44.0617464474571	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTCTGCTTATTTATA	NA	False	NA	NA	False	NA	NA	NA	146322109	146410425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_146322149_146358727_146358828_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029
39148	chr17	-	1511	1	FSM	ENSMUSG00000079710.11	ENSMUST00000232299.2	2253	1	16	726	16	-726	mono-exon	FALSE	NA	NA	NA	NA	NA	43	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTTTACCTACCCTGTA	8894	False	NA	NA	False	NA	NA	NA	15230415	15228904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15228900_15230400
39149	chr5	-	2200	11	NNC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	184.953534705342	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATTCTGTCTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92582947	92563403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570468_92572126_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
39150	chr4	-	3489	4	NNC	ENSMUSG00000057236.11	novel	722	4	NA	NA	24305	13944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	99	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTAGCTGCAGCAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	129204132	129186948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129188169_129200133_129200259_129201832_129203635_129203790
39151	chr11	+	3286	3	FSM	ENSMUSG00000017776.16	ENSMUST00000108425.8	4290	3	172	832	-86	11	multi-exon	FALSE	canonical	3	229	junction_2	118.5	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGGTGATCTTTTGAGAA	2295	False	NA	NA	False	NA	NA	NA	75570281	75596902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75570491_75583022_75583389_75594191
39152	chr6	-	2326	6	NNC	ENSMUSG00000039985.15	novel	2697	6	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1097.39958082733	1	112	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTTGTCTCATGACTT	NA	False	NA	NA	False	NA	NA	NA	148847904	148822559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148823496_148823607_148824509_148830006_148830134_148832048_148832149_148834499_148834647_148847789
39153	chrX	+	1152	7	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	10953	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	879.954244391276	2	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATGCAAATAAATAAATT	NA	False	NA	NA	False	NA	NA	NA	52087966	52110507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
39154	chr11	+	1882	6	FSM	ENSMUSG00000036309.15	ENSMUST00000109072.2	1754	6	-152	24	0	-24	multi-exon	FALSE	canonical	2	5	junction_1	1986.48266038242	17	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAACAGTTGCTTTTGTG	439	False	NA	NA	False	NA	NA	NA	52122863	52137661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52123440_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
39156	chr10	-	2217	10	FSM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	-49	0	-49	0	multi-exon	FALSE	canonical	3	179	junction_6	104.074166337115	930	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5732	False	NA	NA	False	NA	NA	NA	62859722	62850442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
39158	chr4	+	1794	9	NIC	ENSMUSG00000053510.13	novel	4311	31	NA	NA	53	3050	intron_retention	FALSE	canonical	1	202	junction_3	126.039118431541	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAGATAAAGTAGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	108889662	108904913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108890561_108891877_108891948_108895171_108895250_108896854_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793
39159	chrX	+	2453	14	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	964.99231992529	1	133	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCCTATTTTGAATTTGC	NA	False	NA	-15	True	NA	NA	NA	74139709	74153375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142558_74144045_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149265_74149383_74149892_74149988_74150777_74150857_74151798_74151911_74152301
39161	chr11	+	1435	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	177	14	177	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	120653796	120655231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653800_120655200
39163	chr5	-	3620	3	FSM	ENSMUSG00000051034.8	ENSMUST00000049778.7	3929	3	17	292	17	-292	multi-exon	TRUE	canonical	3	10	junction_2	2	1059	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCAAGTCATTTATACAT	NA	False	NA	NA	False	NA	NA	NA	129747146	129731948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129735450_129737833_129737930_129747123
39164	chr19	-	2565	21	NNC	ENSMUSG00000024942.20	novel	3062	22	NA	NA	30	-462	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	51.2800887284724	7	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGGCAGGGGCAGGCAC	2627	False	NA	NA	False	NA	NA	NA	6065203	6039035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6047709_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
39165	chr6	-	1888	4	NIC	ENSMUSG00000032641.19	novel	429	3	NA	NA	-133	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_1	13.9124245031395	33	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	134874180	134846119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134847446_134863853_134863900_134864592_134864749_134873820
39167	chr7	+	1413	7	NNC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2352.15145605512	2	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGCATGCTAATGGGACT	NA	False	NA	NA	False	NA	NA	NA	142606524	142621654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_142606804_142616229_142616345_142619635_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
39168	chr4	+	2600	19	Antisense	novelGene_ENSMUSG00000082711.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	435	8	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGGGCCCCGCCTGGG	6833	False	NA	NA	False	NA	NA	NA	136277854	136329626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_136278348_136279183_136279330_136279771_136279900_136281106_136281219_136281520_136281711_136282482_136282616_136284951_136285065_136285808_136285882_136286482_136286619_136287633_136287727_136288329_136288470_136295881_136295978_136297767_136297850_136299527_136299636_136300383_136300479_136301336_136301415_136304381_136304520_136320278_136320443_136329544
39169	chr4	+	429	1	NIC	ENSMUSG00000039105.7	novel	1135	3	NA	NA	70	-5480	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTGCGAACCTAGGTCA	NA	False	NA	NA	False	NA	NA	NA	63463078	63463507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_63463100_63463500
39170	chr15	-	2476	1	Antisense	novelGene_ENSMUSG00000044250.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCAGTGGTGGCGCACACC	NA	False	NA	NA	False	NA	NA	NA	97283545	97281069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_97281100_97283500
39172	chr18	-	2945	13	NIC	ENSMUSG00000024454.17	novel	2032	15	NA	NA	-4	-108	intron_retention	FALSE	canonical	3	500	junction_2	41.528019322969	6	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTACCTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	38088031	38070132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
39173	chr11	-	2460	10	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-41	0	intron_retention	FALSE	non_canonical	0	0	junction_5	400.025955947984	1	100	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8489	False	NA	NA	False	NA	NA	NA	69572713	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567984_69568794_69569083_69569423_69569560_69569647_69569888_69570968_69571677_69572488
39174	chr7	+	2853	3	FSM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	416	4	24	1	multi-exon	FALSE	canonical	3	351	junction_1	22.5	1445	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTGTTTCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	105289678	105292840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_105289830_105289968_105290065_105290234
39176	chr4	-	2180	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	15	-81	15	81	multi-exon	FALSE	canonical	3	1281	junction_1	0	2344	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTAAGCATGGGCGATT	-16	True	NA	NA	False	NA	NA	NA	49521078	49512514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_49514578_49520961
39177	chr11	-	2325	2	ISM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	-2	3	-2	-3	intron_retention	FALSE	canonical	3	10703	junction_1	0	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAAACCATGTGCCTGTG	3528	False	NA	NA	False	NA	NA	NA	95966447	95963818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_95964045_95964348
39178	chr16	+	1750	9	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	250.283339437526	2	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATGTTATCTTTCATGT	7073	False	NA	NA	False	NA	NA	NA	38379062	38411666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405875_38406582_38406771_38408544_38408666_38411273
39179	chr8	-	1394	6	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-36	-243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	498.999559118042	5	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTATTGTGTCTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	85573495	85568721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569402_85571258_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
39180	chr2	+	1875	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	2	20	2	-20	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	220	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATCCATTTTATTATTA	NA	False	NA	NA	False	NA	NA	NA	73142999	73151120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
39181	chr13	-	1683	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	-29	2	-11	-2	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	919	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCAGTTTTTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	100629098	100605089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
39182	chr3	+	2059	6	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-4	-16	intron_retention	FALSE	canonical	3	403	junction_3	39.4735354383161	54	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTCTGTATA	7040	False	NA	NA	False	NA	NA	NA	108291162	108295479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
39183	chr4	-	1542	3	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	492	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127222927	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220254_127220307_127220565_127222868
39185	chr1	+	2087	13	NNC	ENSMUSG00000073652.11	novel	826	3	NA	NA	-20736	-4044	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	51	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACAGTACCTTCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	71671259	71692360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_71671321_71676409_71676555_71677615_71677747_71679457_71679607_71680313_71680488_71681110_71681291_71682118_71682303_71684703_71684862_71687167_71687308_71688358_71688485_71689720_71689861_71690679_71690809_71691990
39186	chr15	-	1714	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	374	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	1	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83056419	83037697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038164_83038494_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
39189	chr11	+	1626	9	FSM	ENSMUSG00000017390.16	ENSMUST00000017534.15	2786	9	137	1023	-63	-2	multi-exon	FALSE	canonical	3	130	junction_5	18.6547581061776	523	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACACCGCTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	78213930	78217584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
39190	chr9	+	3459	11	NNC	ENSMUSG00000032394.7	novel	762	2	NA	NA	-2563	1154	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	38.742741255621	1	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAACAGTGAGGTTTTTTT	2958	False	NA	NA	False	NA	NA	NA	65085456	65094308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65085563_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091114_65091194_65091314_65091523_65092415
39191	chr13	+	1687	4	NNC	ENSMUSG00000071180.6	novel	1918	3	NA	NA	14	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	77.9786295510935	34	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGAGGTCCTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	108180997	108185700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_108181021_108182958_108183103_108183973_108184640_108184846
39192	chr11	-	1889	3	NIC	ENSMUSG00000020460.16	novel	928	5	NA	NA	-1	388	intron_retention	FALSE	canonical	3	7569	junction_2	207.5	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCATTTTTTTAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	29497861	29495457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_29497261_29497680_29497746_29497840
39193	chr3	-	2745	2	Genic_Genomic	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-3901	-6499	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGAGTTTTTCCCTATCT	NA	False	NA	NA	False	NA	NA	NA	89938646	89935838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_89938074_89938136
39194	chr8	+	1391	8	FSM	ENSMUSG00000019478.18	ENSMUST00000118535.9	1419	8	30	-2	30	2	multi-exon	FALSE	canonical	0	0	junction_5	133.326360361884	613	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTACACTGTCCTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	124532753	124562028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753_124560887_124561432
39195	chr5	+	2476	1	NIC	ENSMUSG00000056014.16	novel	2264	5	NA	NA	23468	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGGACACTCTCCTTA	NA	False	NA	NA	False	NA	NA	NA	138644623	138647099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_138644600_138647100
39196	chr13	+	1505	9	NNC	ENSMUSG00000035493.11	novel	3003	17	NA	NA	-800	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	19.6468827043885	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGTGTGCTAGCTGCGT	NA	False	NA	NA	False	NA	NA	NA	56773114	56787170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56786812
39198	chr9	+	2497	10	ISM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	32	29914	0	-29914	5prime_fragment	FALSE	canonical	3	295	junction_2	41.9046536795139	28	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGCCTCCAGCCCAATAC	NA	False	NA	NA	False	NA	NA	NA	114230175	114273531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076
39199	chr17	+	3437	17	ISM	ENSMUSG00000024462.18	ENSMUST00000173823.8	4204	21	5046	-1	392	1	3prime_fragment	FALSE	canonical	3	39	junction_4	20.2623419179521	114	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCAGCACCTCATCCACT	NA	False	NA	NA	False	NA	NA	NA	37361957	37385183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
39200	chr9	-	2753	12	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	2	-14	at_least_one_novel_splicesite	TRUE	canonical	3	142	junction_1	26.8365114556165	136	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTTAACATTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	107167074	107132147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107132548_107132586_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
39201	chr17	-	2710	12	NNC	ENSMUSG00000079553.12	novel	2260	12	NA	NA	-6	2	intron_retention	FALSE	canonical	1	2	junction_11	216.957169098282	1	78	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTCTTGTTTGTTTTG	9744	False	NA	NA	False	NA	NA	NA	34109584	34094639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34108705_34109117_34109451
39202	chr6	+	2528	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-40	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	356.900073160853	1	128	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGCTGTTGTGTTTTTT	5521	False	NA	NA	False	NA	NA	NA	125108955	125121714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108993_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114692_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118453_125120963
39203	chr1	-	2094	6	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	149	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	419.874933760042	18	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTTCGCCCTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	119432375	119398037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_119399368_119399410_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
39206	chr15	+	1553	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	432	-3	2	3	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	5	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	98928203	98935994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
39207	chr7	+	1870	10	NIC	ENSMUSG00000030826.20	novel	1772	11	NA	NA	-5	2	intron_retention	FALSE	canonical	3	349	junction_3	49.6657966615325	8	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTGGCTATCATGCTCT	2447	False	NA	NA	False	NA	NA	NA	45219768	45239132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45219824_45224854_45225427_45234340_45234452_45234534_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
39208	chr15	-	1630	10	NIC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	3	3	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	452.536554692915	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTCCCTGTGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	75952758	75942035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
39209	chr9	+	3594	14	ISM	ENSMUSG00000038535.18	ENSMUST00000183410.8	4200	21	37078	0	-19	0	3prime_fragment	FALSE	canonical	3	22	junction_12	12.0413488795997	1	121	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTATATTCAGATT	NA	False	NA	NA	False	NA	NA	NA	72219363	72271043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72267567_72267624_72269215
39210	chr12	+	1439	7	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-35	-1689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1723.092181709	2	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908823	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913584_78923873_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
39211	chr5	+	2787	1	NIC	ENSMUSG00000029613.16	novel	4325	15	NA	NA	34581	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGACACTGTTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	143838282	143841069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_143838300_143841100
39212	chr6	-	4692	8	FSM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	116	2	116	-2	multi-exon	FALSE	canonical	3	46	junction_2	7.92824967172092	149	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTAGGAGCCTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	54543358	54482876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397_54511580_54525208_54525369_54543224
39213	chr11	-	772	1	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCACACTGCTGCTGCTA	5960	False	NA	NA	False	NA	NA	NA	120655231	120654459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120654500_120655200
39216	chr11	-	3501	19	NIC	ENSMUSG00000034329.17	novel	6931	20	NA	NA	18	-6150	combination_of_known_junctions	FALSE	canonical	3	7	junction_18	20.1001351263808	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAAGCCACAATTACACC	NA	False	NA	NA	False	NA	NA	NA	86091972	85955113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091899
39219	chr9	-	1269	3	NIC	ENSMUSG00000097195.11	novel	1408	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	461	junction_1	364.5	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	88404944	88403104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88403502_88403970_88404435_88404536
39220	chr2	+	2341	13	NNC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-58	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	64.9247427582291	4	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGTTGTTTTATTCA	NA	False	NA	NA	False	NA	NA	NA	180367113	180384070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379257_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
39222	chr17	-	2088	11	NNC	ENSMUSG00000023942.16	novel	1996	13	NA	NA	205	0	intron_retention	FALSE	canonical	0	0	junction_4	968.929662049831	1	87	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45904355	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898651_45899921_45900001_45900133_45900232_45900339_45900747_45900848_45901052_45901182_45901265_45903104_45903178_45904253
39223	chr12	+	575	4	ISM	ENSMUSG00000057265.14	ENSMUST00000081828.13	2187	12	-2	19114	-2	-13755	5prime_fragment	FALSE	canonical	2	2	junction_3	1.63299316185545	16	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACAATTCCAGAAGAG	4341	False	NA	NA	False	NA	NA	NA	84455842	84461440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_84456030_84457810_84458040_84460037_84460104_84461347
39224	chr12	+	1331	1	FSM	ENSMUSG00000098134.2	ENSMUST00000183146.2	1383	1	52	0	52	0	mono-exon	FALSE	NA	NA	NA	NA	NA	746	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCTGGTGTGATCTTTC	NA	False	NA	NA	False	NA	NA	NA	84464021	84465352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84464000_84465400
39225	chr5	-	2365	10	NNC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_9	106.06915982823	311	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGCAGTCCTCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	31117606	31112385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31116847_31117201_31117314
39226	chr8	+	1766	11	NIC	ENSMUSG00000005481.19	novel	1551	12	NA	NA	0	2	intron_retention	FALSE	canonical	3	43	junction_4	944.136303718907	10	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCTCCAGCCCCATC	NA	False	NA	NA	False	NA	NA	NA	84441896	84449906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
39227	chr4	+	1493	8	NNC	ENSMUSG00000028618.12	novel	1775	8	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	588.558737727257	4	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGAGTGTTGGGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	107035854	107058193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047862_107049658_107049741_107050495_107050578_107054702_107054812_107057564
39228	chr18	+	2941	3	FSM	ENSMUSG00000024571.16	ENSMUST00000145116.8	968	3	-18	-1955	14	-1	multi-exon	FALSE	canonical	3	1244	junction_2	916.5	27	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAAAAGGAGTACACGT	NA	False	NA	NA	False	NA	NA	NA	80250026	80255937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80250117_80250368_80250559_80253276
39229	chr19	+	2786	10	NIC	ENSMUSG00000024927.9	novel	2716	11	NA	NA	27	-19	intron_retention	FALSE	canonical	3	75	junction_9	7.81893870478186	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTCTTATCACGCTGG	NA	False	NA	NA	False	NA	NA	NA	5687773	5698139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5687870_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
39231	chr3	-	1810	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	7	1753	7	-6	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	2	74	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGCACAAGGCTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	108352507	108333933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
39232	chr14	+	1558	11	NIC	ENSMUSG00000021932.14	novel	362	5	NA	NA	-103	4	combination_of_known_junctions	TRUE	canonical	2	10	junction_1	256.284704966957	94	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATAGTTTTGTTGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	62529934	62610445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_62530104_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
39233	chr5	+	1723	7	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1282.52468029101	1	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	728	False	NA	NA	False	NA	NA	NA	77099595	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109093_77112363_77112470_77114093_77114253_77114494
39234	chr5	-	1700	2	Genic_Genomic	ENSMUSG00000047501.4	novel	1816	1	NA	NA	4	-18	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCATACAGGAAAGGTTTG	NA	False	NA	NA	False	NA	NA	NA	134975784	134973990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_134975513_134975606
39235	chr16	+	1298	6	Antisense	novelGene_ENSMUSG00000005846.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTGAGGGCAAATGCC	1963	False	NA	NA	False	NA	NA	NA	11010903	11017460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_11011602_11012323_11012575_11014136_11014261_11014336_11014431_11017248_11017353_11017433
39236	chr12	+	1329	9	NIC	ENSMUSG00000021037.8	novel	1933	6	NA	NA	5	1	combination_of_known_junctions	FALSE	canonical	3	287	junction_1	889.533691042672	80	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	NA	False	NA	NA	NA	87313257	87320754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_87313433_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
39237	chr11	+	1460	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACAAGAGTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653949_120654114
39238	chr1	+	1933	9	NIC	ENSMUSG00000025903.15	novel	1136	10	NA	NA	8	947	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	270.330700254337	10	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCAGCTTTGTAGAAG	NA	False	NA	NA	False	NA	NA	NA	4878060	4919580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4918362
39239	chr11	+	2631	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	-37	-169	3	169	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	1	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGTAAATATTTTCCC	NA	False	NA	NA	False	NA	NA	NA	29476410	29495448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
39240	chr13	+	1808	6	NNC	ENSMUSG00000021218.11	novel	2077	10	NA	NA	2417	387	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	937.372839376094	2	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTTTTGTAGTGCAGCA	NA	False	NA	NA	False	NA	NA	NA	3606455	3616207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3606513_3606925_3607058_3609991_3610115_3611900_3612071_3614799_3614914_3614995
39242	chr10	-	3308	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	218	8	-1	-8	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	1	133	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGAAAGTGCTGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	40759089	40707624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
39243	chrX	-	1516	9	NNC	ENSMUSG00000057836.13	novel	1645	9	NA	NA	0	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	490.550647232271	1	31	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGTTGGCATGAGTC	NA	False	NA	NA	False	NA	NA	NA	72140625	72129902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72130980_72133005_72133054_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
39244	chr16	+	2884	25	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	100	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	345.276939471138	2	143	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	48251699	48451263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48266675_48266745_48269664_48269756_48270362_48270472_48272801_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407500_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443033_48447258_48447471_48451067
39247	chr2	-	2939	13	Antisense	novelGene_ENSMUSG00000026965.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCCGCCCAGTAGAGCGC	NA	False	NA	NA	False	NA	NA	NA	25175928	25162512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_25162687_25162923_25163548_25163807_25163943_25164675_25164851_25166325_25166446_25167645_25167761_25168328_25168509_25169174_25169324_25170136_25170213_25170292_25170497_25174571_25174702_25174946_25175134_25175258
39248	chrX	-	768	4	NNC	ENSMUSG00000031059.10	novel	908	3	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	3	226	junction_3	964.303317887525	9164	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	20483806	20481564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_20481782_20481952_20482084_20483298_20483521_20483608
39249	chr2	-	2957	5	FSM	ENSMUSG00000038848.15	ENSMUST00000037299.15	3184	5	227	0	227	0	multi-exon	FALSE	canonical	3	557	junction_4	33.5885024971343	277	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTTCTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	180562515	180546169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_180547462_180552479_180554001_180560927_180561008_180562104_180562130_180562476
39252	chr10	-	4253	18	NIC	ENSMUSG00000020263.15	novel	3020	21	NA	NA	25	0	intron_retention	FALSE	canonical	3	19	junction_1	22.4374563256797	5	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	83484504	83435896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_83436692_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
39253	chr2	+	2271	5	ISM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	5073	20	1848	-20	3prime_fragment	FALSE	canonical	3	455	junction_1	3.89711431702997	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAATCTGTTTTCACAA	7495	False	NA	NA	False	NA	NA	NA	150756586	150773180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
39254	chr7	-	3130	20	NNC	ENSMUSG00000063550.9	novel	3748	23	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	37.2595151356542	5	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGATGTGCAGTCTGATC	9976	False	NA	NA	False	NA	NA	NA	101859349	101794530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101802999_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829634_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
39255	chr12	+	1467	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	8	130	8	5	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	1064	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGTTTATTGTTCTGAGC	NA	False	NA	NA	False	NA	NA	NA	85266262	85273272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
39256	chr7	-	1918	5	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	105	991	1	-5	intron_retention	FALSE	canonical	3	4974	junction_1	4071.30251731556	9	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8440	False	NA	NA	False	NA	NA	NA	99132840	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467
39257	chrX	-	2235	6	FSM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	-57	-405	-57	-5	multi-exon	FALSE	canonical	3	89	junction_3	3.77359245282264	139	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAAGCTCTGTTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	52459436	52433479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_52434867_52436580_52436743_52444532_52444751_52446286_52446363_52446450_52446705_52459298
39258	chr11	+	1701	9	Antisense	novelGene_ENSMUSG00000034341.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGATCTGGACTGTCA	NA	False	NA	NA	False	NA	NA	NA	115969398	115977876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115970049_115970229_115970423_115970533_115970613_115971049_115971171_115971371_115971507_115972057_115972147_115973097_115973240_115974665_115974776_115977694
39259	chr1	-	1948	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	80	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2012.57048744687	1	102	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCAGACTTAATACTTC	NA	False	NA	NA	False	NA	NA	NA	86287006	86278218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279102_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
39260	chr13	+	1126	9	NNC	ENSMUSG00000021666.17	novel	4416	21	NA	NA	9653	17103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	27	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTCCAGTCTGGGTCGC	NA	False	NA	NA	False	NA	NA	NA	97317609	97334806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
39261	chr13	+	2624	23	NNC	ENSMUSG00000021555.16	novel	1207	14	NA	NA	-98	35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	267.58943820341	1	94	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAAGCTGCCCTG	1076	False	NA	NA	False	NA	NA	NA	59732974	59782601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59733107_59733966_59734096_59743162_59743197_59745857_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775688_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
39262	chr13	+	2052	5	FSM	ENSMUSG00000021458.18	ENSMUST00000223007.2	918	5	-456	-678	-14	3	multi-exon	FALSE	canonical	2	25	junction_1	45.3231453012696	241	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCACTCTGGCCTTGCTT	NA	False	NA	NA	False	NA	NA	NA	63420615	63450688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525_63446671_63449592
39263	chr4	-	1276	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	128	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	169	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGAGTCTTGTTTTTCT	2	True	NA	NA	False	NA	NA	NA	41098180	41092593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41092959_41093572_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
39264	chrX	+	3013	26	FSM	ENSMUSG00000031153.17	ENSMUST00000115675.9	3015	26	2	0	2	0	multi-exon	FALSE	canonical	2	9	junction_12	17.6906755099968	52	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3262	False	NA	NA	False	NA	NA	NA	7656235	7686802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
39265	chr9	+	2384	5	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-13	-34	intron_retention	FALSE	canonical	3	967	junction_4	54.7106022631811	10	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCACATTAAAAATAAACCC	NA	False	NA	NA	False	NA	NA	NA	20914197	20920093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20919196_20919789
39266	chr4	+	3605	1	NIC	ENSMUSG00000070737.11	novel	1762	3	NA	NA	-6	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	19	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	NA	False	NA	NA	NA	127019832	127023437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_127019800_127023400
39267	chr15	-	1720	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	31	130	0	-122	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	2	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTTGCACTTGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	75952731	75942160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
39268	chr17	+	1736	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	330	-7	48	7	multi-exon	TRUE	canonical	3	226	junction_1	6.47216261298253	745	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTATTGCCTCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	79359664	79397814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
39269	chr7	-	3178	4	NNC	ENSMUSG00000036835.8	novel	488	4	NA	NA	-3597	-1190	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAGTAAAAAGAGCAGT	NA	False	NA	NA	False	NA	NA	NA	30266649	30262981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30263042_30263351_30263422_30263506_30264032_30264126
39273	chr19	+	3252	12	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	354.20676130202	2	172	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10160416	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10160629_10162290_10162369_10163048_10163253_10163747_10163848_10164132_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
39274	chr16	-	1564	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1760	0	139	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGCTAGTATTAGAACA	NA	False	NA	NA	False	NA	NA	NA	22084676	22065058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
39275	chr14	-	4154	16	NIC	ENSMUSG00000021803.11	novel	4332	17	NA	NA	83	1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_15	5.55937646383717	23	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGACCTCCCGGTCCTC	NA	False	NA	NA	False	NA	NA	NA	36820221	36799812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36801899_36802418_36802677_36803289_36803519_36804100_36804169_36804720_36804886_36806880_36807034_36807468_36807673_36809333_36809435_36810894_36810974_36811323_36811468_36812539_36812657_36813899_36813987_36815958_36816049_36817011_36817063_36818153_36818300_36820045
39276	chr3	-	1396	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	47	junction_7	309.908230144201	805	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6143	False	NA	NA	False	NA	NA	NA	153618603	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153615964_153616327_153616526_153617561_153617670_153618570
39277	chr1	-	1877	13	NIC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	102.566611147206	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	NA	False	NA	NA	NA	33708861	33492890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_33493386_33503133_33503203_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
39278	chr14	+	3457	26	FSM	ENSMUSG00000058997.9	ENSMUST00000227255.2	3406	26	-55	4	7	-4	multi-exon	FALSE	canonical	2	39	junction_16	9.45524193238862	62	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATCAGTCTCCGTCCT	9353	False	NA	NA	False	NA	NA	NA	79086638	79302704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293
39279	chr12	+	2103	3	NIC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	17880	-1481	intron_retention	FALSE	canonical	3	4448	junction_2	99	5	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACTTGAAAGCAGTGATA	NA	False	NA	NA	False	NA	NA	NA	78926783	78932303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_78928004_78930031_78930176_78931564
39280	chr12	-	2043	4	NIC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	9	739	intron_retention	FALSE	canonical	3	716	junction_3	70.2961987276379	738	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTACCTGTGAAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	85871309	85861482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_85863209_85866252_85866344_85868861_85869023_85871244
39281	chr2	+	2396	13	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5.44416099035369	1	81	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCGTGTCGGTGCTGTGC	2756	False	NA	NA	False	NA	NA	NA	30023816	30042020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027348_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711_30040641_30041720
39282	chr1	+	3494	8	NIC	ENSMUSG00000026305.16	novel	2050	13	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.1163762288972	4	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTACTGGTTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	90926496	91045037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90926616_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91042317
39284	chr11	+	1799	17	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	323.253576933033	411	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120563798	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120579985_120580026_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599828_120599896_120600073_120600169
39285	chr15	-	2243	17	NNC	ENSMUSG00000023169.16	novel	7266	16	NA	NA	-372	-272	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_16	134.355274715026	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAAAAAAAAAAAGGTTTC	NA	False	NA	NA	False	NA	NA	NA	96541166	96474139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371_96540516_96541069
39286	chr6	+	1018	3	Genic_Genomic	ENSMUSG00000012396.13	novel	1995	5	NA	NA	-45624	-4	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGGTCTTATCTTTTG	3233	False	NA	NA	False	NA	NA	NA	122638823	122691588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_122638870_122660301_122660371_122690685
39287	chr15	+	1359	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	306	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	644.5	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4790	False	NA	NA	False	NA	NA	NA	80140029	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80140166_80140407_80140723_80140834
39288	chr14	+	1602	5	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1147.84853094823	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACACGTGTTTCTATATG	6575	False	NA	NA	False	NA	NA	NA	76741953	76745201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744341_76744414_76744560_76744605
39289	chr14	-	1584	7	NNC	ENSMUSG00000037722.9	novel	710	7	NA	NA	-29	688	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	571.091182639768	401	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCTTTCATGTTAGAATC	NA	False	NA	NA	False	NA	NA	NA	45626279	45614922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45625263_45625331_45626204
39290	chr7	+	1946	1	FSM	ENSMUSG00000077711.3	ENSMUST00000104523.3	125	1	-757	-1064	-757	1064	mono-exon	FALSE	NA	NA	NA	NA	NA	50	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050175	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28050200_28052100
39291	chr5	+	2127	12	FSM	ENSMUSG00000056367.15	ENSMUST00000088244.6	1712	12	-71	-344	-42	-2	multi-exon	TRUE	canonical	3	90	junction_4	20.0016528242663	173	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAACTGTTCCTTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	25964952	26055684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
39293	chr6	-	3620	10	Antisense	novelGene_ENSMUSG00000035158.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCGCAACTTAAGCAACTTAA	NA	False	NA	NA	False	NA	NA	NA	97995839	97933987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_97934145_97934284_97935823_97970086_97970314_97971339_97971424_97973332_97973435_97980851_97980974_97983099_97983159_97987355_97987432_97990627_97990776_97994732
39294	chr15	+	3132	13	FSM	ENSMUSG00000023018.6	ENSMUST00000023759.6	3307	13	175	0	13	0	multi-exon	FALSE	canonical	3	247	junction_12	25.0281785638153	264	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTGCTGTCTGGAGGG	7716	False	NA	NA	False	NA	NA	NA	99600184	99611872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99600380_99600986_99601175_99601471_99601515_99601618_99601742_99602211_99602335_99603507_99603625_99605191_99605294_99605520_99605683_99605765_99605864_99607161_99607298_99608973_99609097_99610039_99610142_99610252
39295	chr10	+	1508	8	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	-19	2658	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	400.663276610784	3	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTTTTCTTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	72490707	72495878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72495174
39296	chr3	+	2431	6	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	60	-290	intron_retention	FALSE	canonical	3	403	junction_3	38.5538584320688	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACCTATCTGTCTCCTT	7190	False	NA	NA	False	NA	NA	NA	108291312	108295205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291602_108291689_108291748_108292285_108293724_108293815_108294053_108294593_108294712_108294914
39297	chr6	-	2184	4	ISM	ENSMUSG00000029922.16	ENSMUST00000114823.8	2992	8	18254	10	3208	-10	3prime_fragment	FALSE	canonical	3	1453	junction_3	55.6496980125579	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAATTGGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	39378456	39374747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143
39299	chr2	-	2785	11	NNC	ENSMUSG00000027408.8	novel	2366	14	NA	NA	-2	-1536	intron_retention	FALSE	canonical	1	1	junction_3	48.7237108603193	1	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAAGGACAGACCCTGCC	NA	False	NA	NA	False	NA	NA	NA	130239496	130234231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130235602_130235685_130235866_130235951_130236149_130236273_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
39300	chr11	+	1182	10	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	816.345757055017	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4545	False	NA	NA	False	NA	NA	NA	106146988	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147750_106152069_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
39301	chr9	+	1858	16	NIC	ENSMUSG00000003402.15	novel	2228	18	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	278.614397011752	8	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21914305	21925518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21914389_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
39302	chr14	+	1993	12	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	5	1176	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3556.72571822888	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAAAAAAACTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	63359967	63380488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63362642_63362753_63367097_63367180_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376571_63379189_63379312_63379680
39303	chr2	+	1405	12	ISM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	57	1164	10	390	5prime_fragment	FALSE	canonical	3	511	junction_7	49.3913366111042	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCCCCAGGTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	174257653	174268131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109
39304	chr15	+	1887	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	50	5	-19	-5	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	4	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959428	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
39305	chr17	-	2154	5	NNC	ENSMUSG00000062101.13	novel	2078	4	NA	NA	-4980	7	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	18.0346887968714	134	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATGTTGTCATTATT	9776	False	NA	NA	False	NA	NA	NA	56261480	56245373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56246994_56247928_56247990_56248185_56248313_56256223_56256498_56261408
39307	chr2	-	2696	8	NIC	ENSMUSG00000026851.10	novel	1984	9	NA	NA	62	-658	intron_retention	FALSE	canonical	3	354	junction_3	15.6973935182025	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTCTTCTAATGTT	NA	False	NA	NA	False	NA	NA	NA	30871891	30862846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30871555_30871789
39308	chr4	-	2090	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	3	15	3	-15	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	5	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTCACAAGTGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	137085028	137047021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
39309	chr19	-	3305	7	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	1436	intron_retention	FALSE	canonical	3	31	junction_5	103.870779764517	1	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCAGTGTTGCCCGAAG	9773	False	NA	NA	False	NA	NA	NA	60215129	60185581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214741
39310	chr3	+	1867	4	NNC	ENSMUSG00000028180.19	novel	2924	10	NA	NA	1909	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	358.759901140953	5	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGTGTTGTTTATTAG	NA	False	NA	NA	False	NA	NA	NA	157241970	157253976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157242024_157242114_157242183_157250678_157250760_157252311
39311	chr19	-	1779	1	Antisense	novelGene_ENSMUSG00000055491.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTTTCCTGCTAGG	NA	False	NA	NA	False	NA	NA	NA	46058812	46057033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46057000_46058800
39312	chrX	+	2225	19	NIC	ENSMUSG00000031360.15	novel	1665	15	NA	NA	-2	18	combination_of_known_junctions	TRUE	canonical	2	23	junction_1	48.2283982220199	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTTGTGTTTTCTCCA	NA	False	NA	NA	False	NA	NA	NA	161684231	161814333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_161684391_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
39313	chr16	-	1737	11	NNC	ENSMUSG00000022962.16	novel	1865	11	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	761.095979492731	2	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGTGTTTTGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	91443800	91430296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434883_91434944_91435614_91435684_91436227_91436340_91438099_91438260_91438501_91438578_91439844_91440035_91443771
39315	chr2	+	3664	24	NNC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	248	225	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	82.2780108990533	1	108	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATCTTATTGGGATAGAG	5095	False	NA	NA	False	NA	NA	NA	18069899	18216006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18140422_18140482_18144078_18144148_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
39316	chr17	+	2224	18	NNC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	39	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	380.751569642815	1	84	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGACACACTTTCTGCAA	NA	False	NA	NA	False	NA	NA	NA	71923248	71964881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940680_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
39317	chr11	+	1022	2	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17540	intron_retention	FALSE	canonical	3	1774	junction_1	0	1383	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9431	False	NA	NA	False	NA	NA	NA	88861077	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88861306_88863446
39319	chr5	+	1893	4	NIC	ENSMUSG00000067274.11	novel	854	6	NA	NA	253	301	intron_retention	FALSE	canonical	3	7201	junction_1	4272.06853357429	5	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAAGCTGATCTTAAGC	NA	False	NA	NA	False	NA	NA	NA	115697934	115700915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115699064_115699157_115699305_115699391_115699578_115700484
39320	chr4	-	4464	19	FSM	ENSMUSG00000029020.14	ENSMUST00000105716.9	4241	19	-223	0	-206	0	multi-exon	FALSE	canonical	2	51	junction_4	9.87139526330723	87	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTCTCTGCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	147989367	147958055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147959916_147961407_147961543_147963170_147963368_147964398_147964555_147966473_147966695_147967337_147967441_147967674_147967780_147968083_147968211_147969909_147970032_147970137_147970206_147970727_147970882_147971662_147971771_147971871_147971981_147973076_147973202_147974570_147974734_147979019_147979156_147982920_147983100_147987811_147987955_147989114
39321	chr7	+	2443	3	Antisense	novelGene_ENSMUSG00000002980.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	60	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCCTCAGGCATGTAT	1787	False	NA	NA	False	NA	NA	NA	19490875	19493676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_19491368_19491634_19492496_19492586
39322	chr11	-	1768	10	Antisense	novelGene_ENSMUSG00000034708.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	55	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTTGGCCGCACGATGG	NA	False	NA	NA	False	NA	NA	NA	102327635	102321313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_102321365_102323788_102323933_102324049_102324172_102324304_102324380_102325555_102325651_102325882_102325987_102326075_102326316_102326532_102326767_102326847_102327069_102327153
39323	chr7	+	3527	15	NNC	ENSMUSG00000030852.19	novel	2557	15	NA	NA	5089	0	intron_retention	FALSE	non_canonical	0	0	junction_6	123.733997109995	1	154	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGTGTGGCTGTGAGTTA	NA	False	NA	NA	False	NA	NA	NA	130203136	130366515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130203462_130203566_130203668_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335285_130342572_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
39324	chr17	+	2078	15	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	17	-80	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	547.843229475032	1	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTTGTGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	21165765	21186087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178987_21179097_21179201_21179273_21179653_21179786_21180727_21180863_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
39325	chr19	-	1600	2	NNC	ENSMUSG00000024742.16	novel	2100	2	NA	NA	3002	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATTATAAAAGTGACCA	5206	False	NA	NA	False	NA	NA	NA	10178256	10176518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177234_10177371
39326	chr11	+	1577	11	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	179	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_5	218.460614299237	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1409	False	NA	NA	False	NA	NA	NA	101010942	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014784_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
39328	chr13	-	4090	4	Antisense	novelGene_ENSMUSG00000021712.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACATTCCTCTCCACCTTC	NA	False	NA	NA	False	NA	NA	NA	104328518	104320075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_104321354_104323906_104324186_104324566_104324750_104326168
39329	chr10	-	4872	23	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	113	74127	67	1080	5prime_fragment	FALSE	canonical	3	63	junction_21	9.9474860813596	6	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTCATTGGGCCTTATGA	NA	False	NA	NA	False	NA	NA	NA	75600037	75556072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
39330	chr19	+	4051	9	ISM	ENSMUSG00000024883.9	ENSMUST00000025818.8	4184	10	261	4	261	-4	3prime_fragment	FALSE	canonical	3	23	junction_2	5.58877222652704	46	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTGAAGCTTGATAACT	NA	False	NA	NA	False	NA	NA	NA	5101121	5107095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5101283_5101381_5101497_5101585_5101659_5101768_5101861_5102003_5102745_5102997_5103304_5103626_5103759_5103883_5104036_5104816
39331	chr11	+	1576	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	8	42	8	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	2	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTTTCTGGACAGTCAA	NA	False	NA	NA	False	NA	NA	NA	120653627	120655203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120655200
39332	chr6	-	1008	6	ISM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	46	7329	-20	3543	5prime_fragment	FALSE	canonical	3	1547	junction_3	286.175889969788	1	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGGTGACCCGGCCTAC	8936	False	NA	NA	False	NA	NA	NA	47790318	47780403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
39334	chr7	-	2716	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	31	475	-3	1	multi-exon	FALSE	canonical	3	290	junction_21	336.211639490553	1	133	14	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153796	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
39335	chr13	-	4347	10	Antisense	novelGene_ENSMUSG00000039087.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	129	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGCACAAGGTGAAACCC	NA	False	NA	NA	False	NA	NA	NA	38116666	38021636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_38021717_38072844_38072949_38076530_38076633_38077745_38077959_38082385_38082475_38083596_38083762_38099995_38100129_38100431_38100567_38112094_38112284_38113529
39336	chr7	+	1133	7	NNC	ENSMUSG00000025503.6	novel	1229	8	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1380.22648101277	5	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3804	False	NA	NA	False	NA	NA	NA	140972075	140982881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140972232_140975961_140976082_140980220_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
39338	chrX	+	1118	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	151	-59	151	59	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068960	13070078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13069000_13070100
39339	chr4	+	1970	4	NNC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	275.740215903786	3	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACACTGAAGGAGAGTTG	8215	False	NA	NA	False	NA	NA	NA	101504914	101516550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_101505023_101509595_101509746_101513296_101513493_101515034
39342	chr11	+	1440	13	NNC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	330.699878624444	4	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGGCTCCTTTCCTTTCT	1431	False	NA	NA	False	NA	NA	NA	120675137	120679929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120675169_120675946_120676040_120676525_120676588_120677473_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
39343	chr2	-	3189	20	NNC	ENSMUSG00000015647.10	novel	11388	79	NA	NA	-1740	0	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_4	75.9558480877263	203	39	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTGTGTTGATTTATA	NA	False	NA	NA	False	NA	NA	NA	179823176	179818165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_179818558_179818680_179818801_179818895_179818987_179819066_179819227_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398_179821548_179821628_179821752_179821866_179822030_179822102_179822237_179822401_179822556_179822634_179822772_179822885_179823063_179823142
39344	chr9	-	1204	7	NNC	ENSMUSG00000062270.15	novel	4640	10	NA	NA	4115	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2524.86624508221	2	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTGTGTGGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	89992227	89973723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977184_89984352_89984440_89989287_89989356_89992178
39345	chr9	+	1317	9	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	15	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.514274957871	103	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGTGACTCTGAGTGGCT	640	False	NA	NA	False	NA	NA	NA	45281754	45307449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306768_45306959
39346	chr8	-	1928	5	FSM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	-91	0	-47	0	multi-exon	FALSE	canonical	3	65	junction_3	1844.21519555067	2	95	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760064	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
39347	chr11	-	1178	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7838.60734123097	3	29	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTAGCACTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	33113075	33102518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106041_33106695_33106748_33106990_33107049_33109929_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
39348	chrX	-	591	1	FSM	ENSMUSG00000095597.3	ENSMUST00000187973.2	582	1	42	-51	42	17	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	151693074	151692483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693100
39349	chr4	+	4454	6	ISM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	8023	5139	8023	-5139	3prime_fragment	FALSE	canonical	3	124	junction_5	11.7915223783869	5	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGTACCACAAAATATATT	8013	False	NA	NA	False	NA	NA	NA	6199120	6216549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
39351	chr19	+	2391	13	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-11271	-606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGAAGCTCGGGTCAGCCG	5897	False	NA	NA	False	NA	NA	NA	5333952	5345450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5334746_5336213_5336438_5336597_5336685_5336837_5336977_5337104_5337315_5337565_5337652_5337937_5338035_5338331_5338444_5341333_5341450_5343106_5343348_5344326_5344405_5345068_5345115_5345288
39352	chr7	-	1778	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	5	0	-1	0	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAAGTCCTCTGAGCTT	8633	False	NA	NA	False	NA	NA	NA	45480214	45474653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
39353	chrX	+	1547	5	NNC	ENSMUSG00000015217.12	novel	847	4	NA	NA	422	-22	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	365.186253848635	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTATTACAACGGCCTA	NA	False	NA	NA	False	NA	NA	NA	70600017	70604260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70600107_70601658_70601814_70602038_70602179_70602703_70602879_70603272
39355	chr5	-	2277	2	NIC	ENSMUSG00000028998.7	novel	1125	3	NA	NA	16	-713	intron_retention	FALSE	canonical	3	3790	junction_1	0	12	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATATTTTGCCTTTCAT	NA	False	NA	NA	False	NA	NA	NA	24049143	24044654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24046757_24048968
39356	chr1	+	2963	6	NIC	ENSMUSG00000052423.16	novel	1758	8	NA	NA	74	-1	intron_retention	FALSE	canonical	3	204	junction_1	13.1848397790796	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTGCTTGTGATTTCTG	NA	False	NA	NA	False	NA	NA	NA	171098051	171104466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
39357	chr2	-	1537	14	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	1762	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	138.594508801115	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	164696954	164681440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164694967_164695059_164696185_164696342_164696846
39358	chr1	-	3043	11	FSM	ENSMUSG00000025920.20	ENSMUST00000162007.8	2964	11	15	-94	3	1	multi-exon	FALSE	canonical	3	67	junction_9	11.3207773584679	90	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACTGCTCATTTATAAAT	NA	False	NA	NA	False	NA	NA	NA	16589449	16414420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16589396
39359	chr17	-	2248	12	NNC	ENSMUSG00000063011.8	novel	2054	17	NA	NA	15	-2	intron_retention	FALSE	non_canonical	0	0	junction_5	19.5917000473109	5	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGATGTCCTGTAGTGT	6607	False	NA	NA	False	NA	NA	NA	25973336	25967591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969641_25970587_25970738_25970829_25970960_25971262_25971349_25971915_25972399_25972747_25972792_25973105_25973197_25973316
39361	chr2	-	1821	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-28	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	23	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAAACATCCTTGGTGAC	NA	False	NA	NA	False	NA	NA	NA	152185980	152179348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180150_152180375_152180608_152181634_152181928_152184956_152185248_152185776
39362	chr5	+	3336	16	NNC	ENSMUSG00000029095.18	novel	2953	19	NA	NA	-15	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	24.7246166131381	38	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAATAAATGGTGACACA	1542	False	NA	NA	False	NA	NA	NA	35915252	36042291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169_36015313_36032174_36032258_36040649
39363	chr10	-	1823	9	NNC	ENSMUSG00000019813.17	novel	1949	10	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	79.0363840265988	4	19	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTAAAAGCCTGTGGAAA	367	False	NA	NA	False	NA	NA	NA	41685626	41594845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41598931_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41621766_41621918_41685568
39364	chr4	+	1577	3	ISM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	18	0	0	0	intron_retention	FALSE	canonical	3	743	junction_1	52	2000	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	154041711	154046382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_154041780_154044205_154044320_154044987
39365	chr14	-	1671	9	NIC	ENSMUSG00000006288.9	novel	1842	10	NA	NA	-5	-11	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	271.544080215349	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATTTACCCTATAGT	NA	False	NA	NA	False	NA	NA	NA	51022961	51002882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_51003480_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
39366	chr15	-	1128	8	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	6707	6	72	-6	3prime_fragment	FALSE	canonical	3	1612	junction_5	100.894165604663	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTTCGTCCTGTGCT	9452	False	NA	NA	False	NA	NA	NA	77848306	77843203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219
39367	chr4	-	1997	4	NIC	ENSMUSG00000059291.16	novel	807	5	NA	NA	22	-8	intron_retention	FALSE	canonical	3	383	junction_1	4956.68574307022	38	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGCATGTTACAGTTGT	NA	False	NA	NA	False	NA	NA	NA	135780682	135777265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135777328_135777590_135778614_135778924_135779032_135779877
39369	chr7	-	3194	14	NIC	ENSMUSG00000019734.17	novel	2310	15	NA	NA	9	-2	intron_retention	FALSE	canonical	3	9	junction_11	9.97037030524286	106	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTTTGCGTTTTGAAACC	5407	False	NA	NA	False	NA	NA	NA	3680543	3668791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
39370	chr5	-	2625	10	NNC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	109	1087	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	126.632549011444	1	104	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGGGTCTTGGTTTTCC	NA	False	NA	NA	False	NA	NA	NA	74228972	74161372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166567_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74209326_74209503_74228910
39371	chr8	-	1850	9	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	-16	717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	237.045585014781	191	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3927	False	NA	NA	False	NA	NA	NA	95328288	95301567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309641_95313949_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95317800_95317917_95328124
39372	chrX	-	2437	14	NNC	ENSMUSG00000057421.13	novel	2581	14	NA	NA	-10	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	341.759214867347	1	86	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTCATGGTGTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	95000502	94978938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984158_94984239_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994911_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
39374	chr2	-	1485	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-6	-944	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4417.94592401265	4	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAAACTTGATTCCTGG	3730	False	NA	NA	False	NA	NA	NA	154734757	154714281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718542_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
39375	chr19	-	1086	8	ISM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	7	7935	7	-7935	5prime_fragment	FALSE	canonical	3	2912	junction_3	218.079558596286	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAGCAGGTGGGTCTGAA	3770	False	NA	NA	False	NA	NA	NA	7017328	7006004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
39376	chr3	-	1881	13	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	-47	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	393.93322897274	1	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTATCAAGTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	157630700	157599931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157626896_157627024_157630502
39377	chr15	+	1510	4	Antisense	novelGene_ENSMUSG00000072235.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.471404520791032	1	64	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGCGGCACTTGGGCG	NA	False	NA	NA	False	NA	NA	NA	98847849	98851424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98848898_98849071_98849212_98849344_98849575_98851332
39378	chr15	+	4458	16	FSM	ENSMUSG00000039458.16	ENSMUST00000174418.8	4359	16	3	-102	3	-19	multi-exon	FALSE	canonical	3	72	junction_5	54.8326747680817	178	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAACTTTGAAACAGCGC	51	False	NA	NA	False	NA	NA	NA	12205192	12272307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12205366_12230359_12230421_12232841_12232988_12233939_12234013_12236103_12236207_12238014_12238106_12245069_12245200_12251438_12251515_12257712_12257820_12258503_12258629_12259653_12259733_12261926_12261998_12263810_12263984_12265629_12265798_12266692_12266855_12269587
39379	chr11	+	811	5	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	120	12693	120	48	5prime_fragment	FALSE	canonical	2	8	junction_1	4.74341649025257	13	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGCCTACAACAGGGAG	1062	False	NA	NA	False	NA	NA	NA	98754583	98783173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98754729_98775799_98775931_98781525_98781659_98782321_98782439_98782888
39381	chr17	-	2114	12	Antisense	novelGene_ENSMUSG00000024151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	86	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTTCATGTACTGGC	NA	False	NA	NA	False	NA	NA	NA	88031141	87992981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_87993041_87993743_87993856_87996367_87996576_88003930_88004031_88014607_88014733_88015878_88016028_88020053_88020153_88024880_88025126_88026022_88026233_88026715_88026962_88028308_88028485_88030756
39384	chr4	-	1678	1	NIC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	37	-12	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTACAGGAACTTCTTTT	3771	False	NA	NA	False	NA	NA	NA	41094411	41092733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41092700_41094400
39385	chr9	+	2329	13	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	142	-23	intron_retention	FALSE	canonical	3	1100	junction_8	86.9189836699798	1	103	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTATGTGGCATTTTCTC	NA	False	NA	NA	False	NA	NA	NA	59446964	59472369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59470334_59470506_59470598_59471165_59471271_59472103
39386	chr17	+	1400	5	NNC	ENSMUSG00000046711.17	novel	1898	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	894.210545677023	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACAGTCTCTGGTGTA	NA	False	NA	NA	False	NA	NA	NA	27775600	27782637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778645_27779901_27779972_27781478_27781553_27781642
39387	chr6	+	4176	4	Antisense	novelGene_ENSMUSG00000059486.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTTTAAAAAAAAAAAAA	7957	False	NA	NA	False	NA	NA	NA	56754510	56774207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_56757396_56758782_56758951_56766202_56766686_56773567
39388	chr13	-	1900	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3000.30104271868	1	89	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5715	False	NA	NA	False	NA	NA	NA	58549366	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541147_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549348
39389	chr3	-	2268	10	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-4308	185	intron_retention	FALSE	canonical	3	42	junction_3	272.05350780887	15	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCAATTCCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	88850136	88830756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88833669_88834317_88834378_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081
39390	chr5	+	355	2	ISM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	8694	24279	7240	-27	internal_fragment	FALSE	canonical	3	215	junction_1	0	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGTGTTGGGATAAG	5876	False	NA	NA	False	NA	NA	NA	110996559	110997732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_110996644_110997461
39392	chr15	+	2455	6	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	28	-15	intron_retention	FALSE	canonical	3	98	junction_1	114.604362918695	5	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTCTCCTTTTGAACCC	NA	False	NA	NA	False	NA	NA	NA	102427188	102432094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427280_102427556_102427727_102428909_102429649_102430158_102430232_102430415_102430987_102431283
39393	chrX	-	3229	3	FSM	ENSMUSG00000031325.16	ENSMUST00000182224.8	373	3	-47	-2809	-47	2743	multi-exon	FALSE	canonical	2	8	junction_2	0.5	620	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTTTTATGTTTGTACT	NA	False	NA	NA	False	NA	NA	NA	102296700	102270890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_102273781_102277627_102277876_102296609
39395	chr7	-	2618	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	430.944362288718	1	123	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153793	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111649_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
39396	chr5	+	4786	2	Intergenic	novelGene_780	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	90	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATAATGCAAATTGTCAG	NA	False	NA	NA	False	NA	NA	NA	104841120	104849489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104841162_104844744
39398	chrX	-	2216	12	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	-4	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	419.771011956923	1	86	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGAAAATTGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100128982	100122838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125805_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
39399	chr10	+	1518	7	NIC	ENSMUSG00000040034.16	novel	1286	8	NA	NA	48	-3	intron_retention	FALSE	canonical	3	1090	junction_1	90.8087122594645	40	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCCAATGTTGGCTTGCT	NA	False	NA	NA	False	NA	NA	NA	7543351	7554642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
39400	chr1	-	1881	12	NIC	ENSMUSG00000025968.17	novel	1775	12	NA	NA	52	6	combination_of_known_junctions	FALSE	canonical	3	123	junction_11	248.948101066856	5	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAAGAATGTAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	63215770	63195835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215586
39401	chrX	+	3365	9	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	-3	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	73.7892903814639	23	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCATTTATGACTTGAC	4026	False	NA	NA	False	NA	NA	NA	7588475	7594420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7588619_7590087_7590160_7590262_7590338_7590425_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
39402	chr18	-	2132	9	Antisense	novelGene_ENSMUSG00000089296.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACGGTCCCCGGGGCGT	NA	False	NA	NA	False	NA	NA	NA	38449925	38430026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_38430258_38432805_38432977_38433478_38433643_38434707_38434856_38440912_38441452_38442539_38442765_38446262_38446435_38447722_38447854_38449574
39403	chr18	-	1968	15	FSM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	-23	0	-23	0	multi-exon	FALSE	canonical	3	155	junction_14	20.2922524674833	419	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2769	False	NA	NA	False	NA	NA	NA	34884609	34866045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
39404	chr13	+	2825	14	Antisense	novelGene_ENSMUSG00000116207.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	59	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCGGCGACCACGTGAC	1746	False	NA	NA	False	NA	NA	NA	119490632	119545564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_119491279_119494040_119494198_119502861_119503042_119505010_119505170_119506444_119506681_119508930_119509128_119511164_119511268_119518206_119518400_119523114_119523204_119525729_119525818_119531146_119531363_119533280_119533512_119541086_119541291_119545438
39405	chr9	-	2648	14	NIC	ENSMUSG00000032527.14	novel	2320	15	NA	NA	-28	-4	intron_retention	FALSE	canonical	3	67	junction_11	13.0764705804065	15	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACTTGGGTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100916979	100864088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_100864860_100866425_100866526_100867180_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
39406	chr17	+	2600	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	91	-7	91	7	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	1	146	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17341767	17367100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
39407	chr11	-	2307	24	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	11833	-67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	134.122422422939	1	99	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACATAACCCTGCCTGAC	6259	False	NA	NA	False	NA	NA	NA	54912408	54870000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885856_54889358_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362
39408	chr17	-	1857	13	NNC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	11	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	701.478062538111	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCATAGCTCTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	45906456	45896134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45898127_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
39409	chr19	-	1808	4	Antisense	novelGene_ENSMUSG00000024911.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCCGAACAAAGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	5514171	5511452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_5512658_5513195_5513332_5513630_5513739_5513812
39410	chr3	-	6346	6	NNC	ENSMUSG00000068921.15	novel	388	2	NA	NA	-72029	-92	intron_retention	FALSE	non_canonical	0	0	junction_1	0	17	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGGGAGCGGCAGCGGCG	NA	False	NA	NA	False	NA	NA	NA	88930517	88858042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88858295_88873117_88873635_88888538_88893095_88909076_88909180_88914446_88915183_88930335
39411	chr14	+	4413	23	FSM	ENSMUSG00000039367.12	ENSMUST00000048657.10	4461	23	-8	56	-8	-54	multi-exon	FALSE	canonical	3	291	junction_9	29.806850674089	1	237	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTTCAATGCATCTT	NA	False	NA	NA	False	NA	NA	NA	20724367	20744864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
39412	chr6	+	1925	7	NIC	ENSMUSG00000030120.15	novel	1475	9	NA	NA	3	-13	intron_retention	FALSE	canonical	3	3577	junction_4	229.285423774726	4	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATGGAAAAAAGTGAAGA	NA	False	NA	NA	False	NA	NA	NA	124908390	124913094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124911383_124911548_124911709_124912195
39414	chr5	-	1776	7	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	342	-140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	332.630926603846	2	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATTGGCAGTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	38718544	38684295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692703_38718422
39415	chr17	+	2762	6	FSM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	-113	3	-113	-3	multi-exon	FALSE	canonical	3	80	junction_2	15.6025638918737	97	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCATGGAAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	21787156	21808958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
39416	chr11	+	3373	7	NNC	ENSMUSG00000038366.16	novel	3540	7	NA	NA	99	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	242.501374566551	1	165	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAGTCAAATAAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	97697426	97729556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897_97729388_97729446
39417	chr19	+	3587	11	NNC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	33	65	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	98.0938326297836	1	185	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCTGTTTACGGATTC	NA	False	NA	NA	False	NA	NA	NA	10502662	10525082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10502692_10503315_10503425_10509144_10509364_10509621_10509699_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517137_10518050_10518213_10523055
39420	chr10	+	1180	10	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1267.38930653568	41	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2087	False	NA	NA	False	NA	NA	NA	61484365	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61484571_61487338_61487377_61496764_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
39421	chr5	-	1530	9	Antisense	novelGene_ENSMUSG00000035297.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	131	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCGCTGCCAAGAAGAAAACG	NA	False	NA	NA	False	NA	NA	NA	100695657	100666308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_100666414_100676401_100676555_100677910_100678017_100681107_100681255_100681371_100681527_100685161_100685334_100689401_100689514_100691697_100691790_100695169
39422	chr9	-	1362	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239344.2	1437	3	74	1	72	-1	multi-exon	FALSE	canonical	3	405	junction_2	214.5	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATTCAATTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	88404869	88403105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403502_88403702_88403770_88403970
39423	chr3	+	3950	6	FSM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-146	0	-2	0	multi-exon	FALSE	canonical	3	40	junction_5	13.6	18	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTTATGTATGTGCAT	NA	False	NA	NA	False	NA	NA	NA	127347135	127358487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123
39425	chr5	-	2338	13	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	72	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	649.792076787302	1	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAAAGAGGAAGCTACA	NA	False	NA	NA	False	NA	NA	NA	24782393	24770369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773564_24773655_24773735_24773856_24774084_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781717_24782340
39426	chr17	-	2326	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	-16	3	-16	-3	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	141	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTCGGAGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	46956964	46941552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
39427	chr16	-	2089	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	-12	-504	-12	504	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	580	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTGCTCAGTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	38343037	38318204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
39429	chr4	-	4769	3	FSM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	301	7064	10	2502	multi-exon	FALSE	canonical	3	36	junction_2	8.5	66	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAATAAGCTACTCAGAT	-19	True	NA	NA	False	NA	NA	NA	25799845	25616395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_25620821_25709027_25709115_25799588
39431	chr5	-	3672	9	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	-4	638	intron_retention	FALSE	non_canonical	0	0	junction_2	238.098686210151	1	114	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCGGCCAGATGTGGACAA	1969	False	NA	NA	False	NA	NA	NA	138185471	138180298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138180353_138180462_138180549_138180663_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593
39433	chrX	-	3429	9	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	8	-33	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	100.20720720088	1	119	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACAAATGTAATAAACCAG	NA	False	NA	NA	False	NA	NA	NA	156381631	156330852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333178_156337955_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374556_156381479
39434	chr12	+	3802	3	ISM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	4289	4	239	0	intron_retention	FALSE	canonical	3	234	junction_2	6.5	1	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACACATCTAGTTTGA	NA	False	NA	NA	False	NA	NA	NA	28703889	28709584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_28705684_28707270_28707326_28707631
39435	chr19	+	1871	8	NIC	ENSMUSG00000071655.13	novel	1291	9	NA	NA	52	2	intron_retention	FALSE	canonical	3	1115	junction_4	113.72379716144	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTATATGCCTGGCTCCT	6065	False	NA	NA	False	NA	NA	NA	8849075	8853022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8852717_8852885
39436	chr12	-	3782	6	NIC	ENSMUSG00000021124.14	novel	1490	6	NA	NA	11	-13	intron_retention	FALSE	canonical	3	7	junction_3	282.345603826233	5	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAACCTCGAAAATGTGA	NA	False	NA	NA	False	NA	NA	NA	79219211	79203115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_79203346_79204621_79204684_79207182_79207357_79208874_79211914_79213124_79213184_79218993
39437	chr10	-	2010	7	NIC	ENSMUSG00000025358.17	novel	2240	7	NA	NA	29	2	intron_retention	FALSE	canonical	3	12	junction_6	451.038215922135	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAGTGAATCTCTTTCA	8726	False	NA	NA	False	NA	NA	NA	128540421	128533810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540356
39438	chr15	+	2808	8	NIC	ENSMUSG00000022561.14	novel	2237	12	NA	NA	56	-13	intron_retention	FALSE	canonical	3	245	junction_1	18.8376522650022	19	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTGTTTCTGTACCTTG	4888	False	NA	NA	False	NA	NA	NA	76215605	76219085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76216276_76216359_76216832_76216909_76217012_76217102_76217574_76217663_76218091_76218213_76218405_76218489_76218661_76218781
39439	chr5	-	1414	7	NNC	ENSMUSG00000029433.17	novel	3386	7	NA	NA	-2	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	250.348701259308	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACCAGTTTTCAGAATTG	8960	False	NA	NA	False	NA	NA	NA	123662201	123649769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123650075_123650196_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
39440	chr5	-	4165	23	NIC	ENSMUSG00000036555.15	novel	2494	23	NA	NA	45	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	9.06860901249401	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCCTTTGGCAGGTG	4569	False	NA	NA	False	NA	NA	NA	140687975	140649259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_140651249_140651762_140651964_140654776_140654876_140656221_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140679169_140679299_140682762_140682809_140685439_140685488_140687936
39441	chr12	-	1832	13	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1839	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	99.4312646449239	111	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9511	False	NA	NA	False	NA	NA	NA	110805522	110774231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110785664_110785812_110792875_110792947_110794474_110794610_110800559_110800675_110805381
39442	chr5	-	2966	2	NNC	ENSMUSG00000046000.6	novel	3424	2	NA	NA	59	-229	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTATGTAATGCTGATAC	NA	False	NA	NA	False	NA	NA	NA	97540179	97530285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_97532559_97539486
39443	chr5	+	1625	10	NNC	ENSMUSG00000035297.15	novel	897	7	NA	NA	-19	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	569.08347366621	29	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGAGGTGTTCTATTCC	5682	False	NA	NA	False	NA	NA	NA	100666583	100695665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100666802_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689451_100691738_100691790_100695169
39445	SIRV7	+	2087	5	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTCTCTCTTCCGCGA	NA	False	NA	NA	False	NA	NA	NA	1000	114916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_1810_1858_2679_2999_3113_4132_4238_114676
39446	chr1	+	2702	11	ISM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	37	3	-13	-3	intron_retention	FALSE	canonical	3	160	junction_9	16.8949696655543	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTTTCCCCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	179495811	179514751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260
39447	chr2	+	995	1	NIC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	14986	-11691	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGACACTCCAGAAGAGGG	NA	False	NA	NA	False	NA	NA	NA	132673129	132674124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_132673100_132674100
39449	chr2	+	1634	8	ISM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	16541	44	16458	-44	3prime_fragment	FALSE	canonical	3	148	junction_3	23.1507922904049	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGGTGAACTTTTACTT	NA	False	NA	NA	False	NA	NA	NA	132674601	132685771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
39450	chrX	-	2017	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	508.811670026893	1	74	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	47602263	47563820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_47564066_47564439_47564637_47566576_47566680_47569001_47569145_47570844_47570964_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583694_47585942_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
39451	chr12	-	2088	15	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	1232	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_14	59.0086901244561	7	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84660929	84649306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84660678
39452	chr18	+	1674	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	-9	93	-9	-93	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	14	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGATAAAAACTAAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	67523777	67535726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
39453	chrX	+	1769	9	NNC	ENSMUSG00000031007.3	novel	2324	9	NA	NA	0	-308	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	349.540390191177	2	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTGTGTCACTGCAATT	NA	False	NA	NA	False	NA	NA	NA	12454039	12482980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475155_12482128
39454	chr11	+	216	1	Intergenic	novelGene_2386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCACCTAATTGCTTAAC	NA	False	NA	NA	False	NA	NA	NA	66804853	66805069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_66804900_66805100
39455	chr19	+	1680	10	NNC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	4	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	201.403286841643	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAAGCCAGGTTTGACCT	3579	False	NA	NA	False	NA	NA	NA	4198621	4204024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4198736_4199340_4199544_4199861_4199985_4200502_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
39456	chr15	-	2738	11	NNC	ENSMUSG00000022329.16	novel	2914	11	NA	NA	29	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	83.5942581760255	1	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATAAATTCCATTGTGC	NA	False	NA	NA	False	NA	NA	NA	35155867	34875670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073306_35099579_35099695_35114674_35114804_35115710_35115792_35155672
39457	chr15	-	2572	6	ISM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	13997	2	577	-2	3prime_fragment	FALSE	canonical	3	588	junction_3	36.0388679067476	1	129	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTTTGAGCTATAATGT	3520	False	NA	NA	False	NA	NA	NA	83019535	83010180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494
39458	chr5	+	1775	13	NNC	ENSMUSG00000029387.11	novel	2672	13	NA	NA	10	236	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_2	193.045097638407	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTATTTTTATATTTACT	NA	False	NA	NA	False	NA	NA	NA	124717214	124734886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124717265_124720510_124720591_124722024_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
39459	chr19	-	2166	5	NNC	ENSMUSG00000024944.7	novel	1286	5	NA	NA	4	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	315.493264587376	12	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCACTCTTCACCCAGTT	NA	False	NA	NA	False	NA	NA	NA	6191166	6184432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6184832_6186008_6186504_6186609_6187671_6187759_6187871_6191066
39460	chr9	-	2348	5	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	52	0	intron_retention	FALSE	canonical	0	0	junction_2	1948.7037358203	1	117	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775091	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771994_110772040_110772322_110773258_110773312_110774891
39461	chr1	+	4202	12	NNC	ENSMUSG00000048865.17	novel	4494	12	NA	NA	262	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	11.0123897167112	510	34	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTATGTACTTTGTCTT	2799	False	NA	NA	False	NA	NA	NA	171216828	171237808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171216932_171225042_171225146_171228123_171228269_171229492_171229576_171229724_171229833_171230780_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377_171232747_171234910_171235204_171235295
39464	chr12	+	1640	9	NNC	ENSMUSG00000021134.18	novel	1568	8	NA	NA	0	-10	intron_retention	FALSE	canonical	0	0	junction_6	848.655701683551	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAGTATTATAAAACTGC	NA	False	NA	NA	False	NA	NA	NA	80992307	80997261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80994902_80994940_80995868_80995943_80996267_80996379_80996493
39466	chr9	-	4116	37	NIC	ENSMUSG00000040936.16	novel	4103	37	NA	NA	-10	0	combination_of_known_junctions	TRUE	canonical	2	8	junction_10	8.02772971919486	43	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATGTGTCAAACCCTCT	NA	False	NA	NA	False	NA	NA	NA	121106273	120793519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_120793675_120795462_120795549_120873751_120873938_120902983_120903083_120910629_120910797_120932612_120932719_120955515_120955565_120970899_120970993_120974052_120974198_120974400_120974453_120981155_120981251_120981343_120981396_120986038_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086488_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
39467	chr2	+	3600	2	FSM	ENSMUSG00000057738.15	ENSMUST00000201758.2	719	2	-2613	-268	99	-2	multi-exon	FALSE	canonical	3	543	junction_1	0	12	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTAAAGGCTTTGCTCCT	3260	False	NA	NA	False	NA	NA	NA	29917707	29921455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29920835_29920982
39468	chr11	+	1673	8	ISM	ENSMUSG00000018372.14	ENSMUST00000018516.11	2696	20	-77	11818	-54	-6804	5prime_fragment	FALSE	canonical	3	42	junction_4	4.69041575982343	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAATAAACTAAATTTA	5042	False	NA	NA	False	NA	NA	NA	106680023	106697861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061
39469	chr9	+	1240	11	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	962.510472670298	1	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1150	False	NA	NA	False	NA	NA	NA	108437639	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438279_108438795_108438830_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
39470	chr17	+	2697	11	NNC	ENSMUSG00000002768.9	novel	706	4	NA	NA	-3652	-925	intron_retention	FALSE	non_canonical	0	0	junction_1	0	14	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCCGGTTTGTGCGCAT	NA	False	NA	NA	False	NA	NA	NA	46986066	46991854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46987323_46987430_46987506_46987624_46987736_46987872_46987957_46988030_46988243_46988351_46988429_46988613_46988727_46988857_46989037_46989209_46989422_46989969_46990121_46991627
39471	chr9	+	2511	14	FSM	ENSMUSG00000032097.11	ENSMUST00000170489.2	6065	14	1	3553	1	-3553	multi-exon	FALSE	canonical	2	6	junction_1	9.15352294193447	28	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAACAATACC	NA	False	NA	NA	False	NA	NA	NA	44516189	44548475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44516282_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
39472	chr2	-	2150	3	ISM	ENSMUSG00000015335.17	ENSMUST00000137001.2	846	4	22	-379	22	-1	intron_retention	FALSE	canonical	3	682	junction_2	2.5	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCATGCTGCCGTGGA	NA	False	NA	NA	False	NA	NA	NA	29983606	29980963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_29981846_29981999_29982078_29982416
39473	chr15	-	1771	4	NIC	ENSMUSG00000058600.14	novel	886	5	NA	NA	0	-1	intron_retention	FALSE	canonical	3	3551	junction_3	873.300381057718	62	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAACATGGTGTCTGTTT	324	False	NA	NA	False	NA	NA	NA	34443405	34440656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_34440751_34441377_34442927_34443170_34443224_34443330
39474	chr5	-	591	1	Intergenic	novelGene_657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAACAAGACCCAAACAAT	3473	False	NA	NA	False	NA	NA	NA	3939708	3939117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_3939100_3939700
39475	chr4	-	3166	14	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-7	-28	intron_retention	FALSE	canonical	0	0	junction_4	216.725086950287	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCGAATAAAACTGTGACTG	NA	False	NA	NA	False	NA	NA	NA	155845557	155825125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833188_155833609_155833666_155834588_155834714_155834929_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
39476	chr6	-	3930	6	NIC	ENSMUSG00000039841.15	novel	4311	6	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	11.0381157812373	47	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGTGTTATCTTTTTGT	2	True	NA	NA	False	NA	NA	NA	28261923	28239929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_28241657_28242975_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
39477	chr15	+	1496	16	NNC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	174.944105359398	41	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGACTGGAGCTTTTTC	2219	False	NA	NA	False	NA	NA	NA	102379183	102407312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391592_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923_102407057_102407131
39478	chr17	-	1921	5	FSM	ENSMUSG00000024150.13	ENSMUST00000151155.8	603	5	-6	-1312	3	0	multi-exon	FALSE	canonical	3	42	junction_4	129.331695651143	647	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	NA	False	NA	NA	NA	87573329	87562085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573262
39479	chr2	-	1542	14	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	257	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	100.554910078168	25	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGGGTTTCTCTAGCTC	NA	False	NA	NA	False	NA	NA	NA	164698459	164681439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698385
39480	chrX	+	903	5	ISM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	831	132	767	-132	3prime_fragment	FALSE	canonical	3	351	junction_4	22.0496598613221	1650	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTACAAATGTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	99538727	99559599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
39481	chr14	+	1376	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	-31	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	669.287535783803	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAACATGATTGTGTG	1928	False	NA	NA	False	NA	NA	NA	26359470	26377988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050_26377665_26377786
39483	chr15	+	2855	9	FSM	ENSMUSG00000037353.10	ENSMUST00000229648.2	1222	9	-76	-1557	-4	468	multi-exon	FALSE	canonical	3	74	junction_1	16.3587705833904	141	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAAAGAACCTAAAGAGCA	2343	False	NA	NA	False	NA	NA	NA	100366911	100377513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100367020_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
39484	chr2	+	1642	7	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-304	969	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1159.9047015452	8	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCGCCCCGACTCTGC	NA	False	NA	NA	False	NA	NA	NA	162916360	162925588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162916725_162917555_162917746_162919593_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
39485	chr12	+	1934	10	ISM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	9884	2249	9418	-2249	3prime_fragment	FALSE	canonical	3	823	junction_4	66.5382095741487	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTGGTGTTGTACA	NA	False	NA	NA	False	NA	NA	NA	32880217	32901099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
39486	chr15	-	2575	8	NNC	ENSMUSG00000022387.18	novel	3259	12	NA	NA	-7464	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_7	224.216549845211	298	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTCCCGTGTTTGGC	7678	False	NA	NA	False	NA	NA	NA	88592531	88571236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585081_88591236_88591498_88592298
39488	chr7	-	2289	11	Antisense	novelGene_ENSMUSG00000030924.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGAGGGGCTCCCGGTCCTC	NA	False	NA	NA	False	NA	NA	NA	119427429	119393364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_119393724_119398785_119398899_119400450_119400580_119401963_119402059_119404363_119404508_119417603_119417694_119418653_119418769_119422976_119423118_119423267_119423363_119424757_119424860_119426523
39489	chr17	+	3162	17	ISM	ENSMUSG00000035842.11	ENSMUST00000225687.2	4480	25	12766	270	-2076	45	3prime_fragment	FALSE	canonical	3	152	junction_1	16.6159514849436	1	133	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGTCATTGGGCAAAAG	NA	False	NA	NA	False	NA	NA	NA	66443331	66458429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66457048_66457325_66457405_66457568_66457724_66457797
39490	chr7	-	2025	4	Antisense	novelGene_ENSMUSG00000059070.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCGCGCCGGAGTGGGC	348	False	NA	NA	False	NA	NA	NA	45370240	45367525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_45368762_45368950_45369441_45369715_45369910_45370135
39491	chr17	-	1915	7	NNC	ENSMUSG00000057789.15	novel	1974	7	NA	NA	-12	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	49.5190760100478	2	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACACCTCGCCTGGCAT	NA	False	NA	NA	False	NA	NA	NA	27247573	27238790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241772_27241826_27241852_27244766_27244868_27247384
39492	chr12	+	1123	6	NNC	ENSMUSG00000021134.18	novel	1491	8	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	770.782874744892	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992309	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992317_80994291_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
39493	chr3	-	1996	13	NNC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	258.403108856427	7	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	NA	False	NA	NA	NA	127347001	127330362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_127330684_127334193_127334286_127334447_127334519_127336719_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
39494	chr14	+	1481	4	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	27	25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	838.872391302091	27	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGATTGTGTGTTCTTT	1713	False	NA	NA	False	NA	NA	NA	26359255	26377994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368170_26377081
39495	chr13	-	1882	18	NNC	ENSMUSG00000039233.13	novel	1844	17	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	51.7462533956269	9	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTCTGCCCTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	14214170	14172532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14177144_14177254_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202304_14202368_14203860_14203992_14214122
39496	chr9	-	1005	7	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACGACACATCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	64085768	64082877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085002_64085074_64085168_64085300_64085504
39497	chr5	+	882	1	NIC	ENSMUSG00000019054.14	novel	948	5	NA	NA	6	-11795	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTGCCTCCCAAGTGCA	4057	False	NA	NA	False	NA	NA	NA	136982134	136983016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_136982100_136983000
39498	chr14	+	2488	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	-12	116	3	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	219	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	122771738	123127240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
39499	chr8	-	1218	4	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	71	-376	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3594.30169388529	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATCTCCCTGCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	46663996	46660209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661576_46662058_46662540_46663848
39501	chr2	+	1902	17	NIC	ENSMUSG00000000194.14	novel	6134	18	NA	NA	-8	30	combination_of_known_splicesites	FALSE	canonical	1	3	junction_13	118.362773259797	2	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTACCTTGCTAATTGGG	NA	False	NA	NA	False	NA	NA	NA	31042336	31104608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31097690_31097741_31099078_31099163_31100460_31100583_31104255
39507	chr13	-	2911	9	NNC	ENSMUSG00000035936.7	novel	5647	10	NA	NA	10050	-2284	intron_retention	FALSE	canonical	0	0	junction_6	17.2150914897366	31	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTCCCATAAATTCAAAACA	NA	False	NA	NA	False	NA	NA	NA	25111594	25093845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_25095750_25096230_25096290_25097726_25097897_25099744_25099904_25102483_25102628_25103661_25103778_25107949_25108067_25109960_25110132_25111523
39508	chr13	-	1165	1	ISM	ENSMUSG00000035936.7	ENSMUST00000037615.7	5647	10	28898	20	28898	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTTATTTCTGGGTTA	NA	False	NA	NA	False	NA	NA	NA	25092746	25091581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_25091600_25092700
39509	chr11	-	1601	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_9	949.795393755939	9	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGGTCTGAACCTTGTT	9579	False	NA	NA	False	NA	NA	NA	5828218	5822192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825214_5826712_5826990_5828187
39510	chr9	+	980	7	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	2282	147	-1478	-147	3prime_fragment	FALSE	canonical	3	17449	junction_3	1267.49627437541	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082938	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
39512	chr12	-	2692	13	Antisense	novelGene_ENSMUSG00000021192.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	116	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGGAGACGTGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	102464166	102435534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_102435621_102438254_102438822_102440802_102441031_102442426_102442648_102443054_102443178_102445854_102446059_102450660_102450832_102453376_102453505_102455674_102455773_102458264_102458504_102460016_102460117_102461956_102462022_102463704
39513	chr17	-	1508	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234968.2	1502	7	-6	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	246.820953999723	1957	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	25105313	25101590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25102384_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
39514	chr10	+	2772	6	Fusion	ENSMUSG00000020307.16_ENSMUSG00000054206.3	novel	1287	5	NA	NA	51	0	intron_retention	FALSE	canonical	2	4	junction_2	653.912348866421	2	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTCTGCCTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	79520887	79531095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_79521202_79523682_79525300_79528654_79528815_79529957_79530097_79530184_79530452_79530820
39516	chr6	-	2527	11	Antisense	novelGene_ENSMUSG00000029670.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21974904	21949640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_21949793_21952127_21952229_21953761_21953826_21965730_21965830_21967625_21967698_21968883_21969002_21969274_21969433_21969907_21970107_21971105_21971305_21971806_21971849_21973581
39517	chr4	+	1870	9	ISM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	164002	1913	-195	-1913	3prime_fragment	FALSE	canonical	3	1161	junction_3	118.987853896942	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCATCCATGAGTATAT	NA	False	NA	NA	False	NA	NA	NA	109697786	109819244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
39518	chr17	+	2532	9	NNC	ENSMUSG00000024308.16	novel	2898	8	NA	NA	-38	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	75.2336984003844	3	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAATAAAGTCTTTCCGA	434	False	NA	NA	False	NA	NA	NA	34138447	34148239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113_34147333_34147529
39519	chr2	+	3264	18	Antisense	novelGene_ENSMUSG00000006800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	143	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCTGCTCCATGATACG	NA	False	NA	NA	False	NA	NA	NA	165915839	165958982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165916765_165917675_165917730_165919441_165919562_165920956_165921102_165921387_165921557_165921943_165921997_165922714_165922812_165923206_165923301_165923394_165923629_165924494_165924707_165925777_165925907_165926308_165926361_165927599_165927722_165928892_165929082_165931117_165931266_165935368_165935542_165936392_165936550_165958791
39520	chr12	+	1455	9	NNC	ENSMUSG00000021103.13	novel	2505	8	NA	NA	16	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	142.906820603497	982	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTGGGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73170506	73319626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73274036_73274139_73319187
39521	chrX	-	2062	8	NNC	ENSMUSG00000031266.8	novel	3172	7	NA	NA	39	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.1131015933434	618	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTACACTGCGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	133501715	133488911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_133489334_133490270_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
39522	chr17	-	2079	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	1	86	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906477	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
39523	chr9	+	1479	13	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	555	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	894.574025723976	1	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1744	False	NA	NA	False	NA	NA	NA	108438233	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108438279_108438795_108438898_108438988_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
39524	chr6	-	1823	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	0	2	0	-2	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	1104	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGGAGCTTTTTGTT	2839	False	NA	NA	False	NA	NA	NA	52617374	52523214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
39525	chr11	+	1673	4	FSM	ENSMUSG00000020328.11	ENSMUST00000141839.2	577	4	-533	-563	5	0	multi-exon	FALSE	canonical	3	90	junction_1	492.487788906712	3186	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	40624498	40630873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_40625083_40626844_40626894_40627319_40627472_40629985
39526	chr4	+	2377	12	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	-3	-182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	256.640340677006	1	58	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACTTCTGTCCATCTGT	9107	False	NA	NA	False	NA	NA	NA	152018184	152066412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058236_152063987_152064044_152064374_152064505_152065159
39528	chr11	-	2686	5	NNC	ENSMUSG00000020303.3	novel	3940	4	NA	NA	2	87	intron_retention	FALSE	non_canonical	0	0	junction_1	66.8818921682095	41	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCATGGCTCCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	31320072	31307898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_31309214_31309873_31310529_31315331_31315544_31317725_31317869_31319711
39532	chr1	-	3289	8	FSM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	17	72	3	-72	multi-exon	FALSE	canonical	3	121	junction_1	29.2707278728098	112	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCCAACCCCCAAGTCT	NA	False	NA	NA	False	NA	NA	NA	36484335	36461217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
39533	chr10	+	1779	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	-10	-631	-9	7	multi-exon	FALSE	canonical	3	212	junction_7	327.562862014955	549	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGTTTAGTTGCTATTTT	NA	False	NA	NA	False	NA	NA	NA	72490717	72505628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
39534	chr15	-	1292	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	54	5	1	-1	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	4	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
39535	chr11	-	3956	22	ISM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	65255	5	-39560	-5	3prime_fragment	FALSE	canonical	3	205	junction_16	29.4934559788817	253	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAGCTTCTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	35806099	35729231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_35730072_35731136_35731259_35732580_35732815_35734981_35735075_35743020_35743186_35744186_35744305_35750922_35751015_35752635_35752777_35758061_35758255_35759923_35760011_35761300_35761382_35761742_35761852_35766440_35766980_35767355_35767446_35774074_35774318_35778889_35778964_35780086_35780234_35782275_35782406_35788202_35788283_35789445_35789523_35801002_35801207_35806002
39536	chr4	+	2676	15	NNC	ENSMUSG00000006215.13	novel	3478	15	NA	NA	-2	-5	intron_retention	FALSE	canonical	0	0	junction_8	60.0997470197399	2	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAATGTTGCCTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	141172014	141194531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141192014_141192099_141192403_141192659_141192748_141192834_141192878_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
39537	chrX	-	2677	22	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCCGGAAAGCTACTTCA	NA	False	NA	NA	False	NA	NA	NA	143152652	143118951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_143119458_143120085_143120172_143121959_143122008_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127334_143128609_143128715_143129675_143129739_143130951_143131054_143132281_143132399_143133261_143133518_143134257_143134371_143134766_143134908_143135623_143135762_143136563_143136624_143138578_143138647_143139906_143139947_143146852_143147102_143150892_143150933_143152553
39539	chr11	-	1731	14	NNC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	-5	-213	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	371.202794699743	6	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGCTTTCTGCTCTGTTT	4484	False	NA	NA	False	NA	NA	NA	6217777	6209131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6209259_6209546_6209621_6211615_6211709_6212456_6212547_6212666_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
39540	chr17	-	2420	17	FSM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	6	857	1	-854	multi-exon	FALSE	canonical	3	178	junction_12	29.2883695986991	1	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACCCTGGGCTGTCCCC	NA	False	NA	NA	False	NA	NA	NA	57138007	57083753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
39542	chr15	+	2219	12	NIC	ENSMUSG00000022550.19	novel	2058	14	NA	NA	-2	-26	intron_retention	FALSE	canonical	3	114	junction_7	19.2555669743618	38	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACACAATGACCACACAC	3147	False	NA	NA	False	NA	NA	NA	76460602	76479982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
39543	chr19	+	4476	12	FSM	ENSMUSG00000025231.18	ENSMUST00000039922.13	4522	12	41	5	19	-5	multi-exon	FALSE	canonical	3	63	junction_6	14.4473967456865	63	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTGAGTTGTGTGCTTC	NA	False	NA	NA	False	NA	NA	NA	46385375	46477238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
39544	chr17	+	1849	10	NNC	ENSMUSG00000002279.20	novel	1858	11	NA	NA	0	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	39.1949858219166	424	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTCAGCCTCCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	25798150	25881798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25798354_25804516_25804831_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
39545	chr2	-	1518	7	NIC	ENSMUSG00000016257.16	novel	1553	6	NA	NA	-1	-16	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	410.852366022963	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAGAACACTGAGACAGAA	NA	False	NA	NA	False	NA	NA	NA	174314725	174306875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174312641_174312772_174314624
39546	chr8	+	1381	11	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAGTGAGATGTCCACGT	NA	False	NA	NA	False	NA	NA	NA	112720081	112729976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112720338_112721494_112721639_112723090_112723218_112724206_112724294_112724921_112725010_112725155_112725239_112726702_112726822_112728115_112728241_112728331_112728524_112729146_112729236_112729905
39547	chr10	-	1200	10	Antisense	novelGene_ENSMUSG00000020089.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3238	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTAATGCGTGGGGCT	NA	False	NA	NA	False	NA	NA	NA	61509947	61484377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_61484570_61487336_61487397_61496753_61496809_61499466_61499554_61501116_61501244_61502687_61502816_61503361_61503449_61506195_61506267_61508169_61508211_61509595
39548	chr3	-	2501	8	NNC	ENSMUSG00000074513.10	novel	2799	8	NA	NA	-45	-280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.9035542943095	42	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTCTCCGTGAACTCTG	NA	False	NA	NA	False	NA	NA	NA	84489977	84403679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_84405145_84417214_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
39549	chr2	+	1900	4	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-12	-6	intron_retention	FALSE	canonical	3	4686	junction_3	202.001650158276	1	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800816	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801139_26801433_26802172_26802377_26803070_26803176
39550	chr19	-	1567	3	FSM	ENSMUSG00000007338.11	ENSMUST00000235520.2	1311	3	3	-259	3	-16	multi-exon	FALSE	canonical	3	20	junction_2	445.5	76	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCATCTGAAACTCTCCA	NA	False	NA	NA	False	NA	NA	NA	6107785	6103667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6105013_6105105_6105231_6107688
39551	chr4	-	4208	13	NNC	ENSMUSG00000029060.18	novel	3282	17	NA	NA	-1428	0	intron_retention	FALSE	canonical	0	0	junction_3	93.298319325103	7	92	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	NA	False	NA	NA	False	NA	NA	NA	155745468	155739138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155739451_155739561_155739628_155739708_155739893_155739978_155740763_155740850_155740978_155741102_155741264_155741369_155741772_155741845_155741980_155742054_155742218_155742311_155743723_155743844_155744040_155744134_155744242_155745306
39552	chr2	-	1840	12	NNC	ENSMUSG00000027206.14	novel	2073	13	NA	NA	-8	-89	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	280.01682357959	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTAGTAAAGGTTAGACAA	NA	False	NA	NA	False	NA	NA	NA	125700924	125673610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_125674298_125676663_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
39554	chr2	-	1742	16	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-39	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_15	91.9865690679291	1	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	164699501	164681440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699437
39555	chr3	-	1790	3	FSM	ENSMUSG00000001018.16	ENSMUST00000107351.2	958	3	-195	-637	6	7	multi-exon	FALSE	canonical	3	694	junction_2	10	31	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATTATGGTTTCA	NA	False	NA	NA	False	NA	NA	NA	90398294	90395669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90396901_90397460_90397580_90397854
39556	chr7	+	2751	4	NIC	ENSMUSG00000042831.14	novel	479	5	NA	NA	1	-8	intron_retention	FALSE	canonical	3	431	junction_1	16.7597401199687	11	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCTTTACTCGTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	30008202	30013720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30008260_30008905_30009480_30011264_30011326_30011661
39560	chr11	-	2480	20	NIC	ENSMUSG00000020792.16	novel	3449	20	NA	NA	0	175	combination_of_known_splicesites	FALSE	canonical	2	4	junction_13	70.0554983793963	336	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGTCTGCTTTCATCCC	8920	False	NA	NA	False	NA	NA	NA	116197560	116179713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116187555_116187625_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
39561	chr13	+	1748	3	NNC	ENSMUSG00000078941.10	novel	1298	5	NA	NA	155	516	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	627	38	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATGACTTACACAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	100787641	100793083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_100787755_100790698_100790792_100791541
39562	chr2	+	1752	10	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	93.1034205256727	4	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGTTTTGGTGTGTTA	79	False	NA	NA	False	NA	NA	NA	13579120	13587632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579415_13579492_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
39563	chr16	-	2114	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	80	1209	1	690	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATATTGGCCAAGTAGA	NA	False	NA	NA	False	NA	NA	NA	22084675	22064507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
39564	chr11	+	1768	8	NNC	ENSMUSG00000020458.17	novel	2257	8	NA	NA	29	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	328.327238453047	74	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTTGTGTTTAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	29642976	29692914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29643236_29643635_29643694_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
39567	chr11	-	1046	5	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-23	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9032.9801387748	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAGCCCCCAACTCAGTT	6444	False	NA	NA	False	NA	NA	NA	69812039	69807550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808148_69808447_69808555_69808742_69808848_69809976_69810163_69811988
39569	chr2	-	3485	11	NNC	ENSMUSG00000034278.4	novel	1008	11	NA	NA	-54	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	103.574369416376	6	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACAGTCTACTTTTCT	NA	False	NA	NA	False	NA	NA	NA	119039330	119002988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119012408_119012605_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
39570	chr2	-	1920	9	NNC	ENSMUSG00000027496.16	novel	1905	9	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	433.437261175132	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGGAGTACGTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	172212427	172198117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212298
39571	chr11	+	3806	5	FSM	ENSMUSG00000020491.16	ENSMUST00000073924.10	3866	5	28	32	-23	-32	multi-exon	FALSE	canonical	3	20	junction_3	8.74642784226795	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATTATTCATTAAAATG	NA	False	NA	NA	False	NA	NA	NA	58758069	58774082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58758136_58759640_58759833_58767519_58767647_58769601_58769695_58770754
39572	chr8	-	2536	8	NIC	ENSMUSG00000008892.13	novel	1354	9	NA	NA	10	-5	intron_retention	FALSE	canonical	3	2053	junction_7	125.617820131914	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAATTGTTCATCTGACTT	NA	False	NA	NA	False	NA	NA	NA	23083764	23067106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23067619_23068058_23068117_23069007_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
39573	chr2	-	2595	10	NNC	ENSMUSG00000046085.8	novel	1037	5	NA	NA	-33044	-1962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGCACCACCCCGGCCC	NA	False	NA	NA	False	NA	NA	NA	103891750	103858188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103858312_103860688_103860775_103863936_103864104_103873246_103873363_103876001_103876207_103878274_103878321_103880611_103880699_103881476_103881599_103883706_103883825_103890225
39574	chr13	+	1656	8	Antisense	novelGene_ENSMUSG00000021519.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCTGGGCAGCGCAGCC	NA	False	NA	NA	False	NA	NA	NA	67060194	67080801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_67060443_67062690_67062851_67064674_67064749_67065089_67065238_67070819_67071009_67076232_67076387_67077948_67078288_67080457
39575	chr17	+	1791	12	NIC	ENSMUSG00000055817.19	novel	882	8	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	326.775531418563	76	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGCCTTTGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84036603	84100302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_84036957_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
39576	chr14	+	1480	2	Genic_Genomic	ENSMUSG00000114902.2	novel	864	1	NA	NA	-1764	203	multi-exon	FALSE	canonical	2	2	junction_1	0	52	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAATTGGTCACATCTTT	NA	False	NA	NA	False	NA	NA	NA	61794482	61797313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_61794890_61796240
39577	chr4	-	1160	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	95	10	2	-10	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	54	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGGAATGCTGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	133695217	133692058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
39578	chr6	-	2750	7	NIC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	28	-6	intron_retention	FALSE	canonical	3	942	junction_6	58.4921647174503	3	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTACTGTCATCCCACAC	2221	False	NA	NA	False	NA	NA	NA	113717660	113705028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113706704_113707295_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
39579	chrX	+	2751	3	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-26	-2	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	31	170	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAAACATTGTTCCAGT	NA	False	NA	NA	False	NA	NA	NA	134643455	134648069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_134643728_134645247_134645325_134645667
39580	chr14	+	1518	15	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	461.969171380648	297	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGGACTAACCATAAATG	NA	False	NA	NA	False	NA	NA	NA	45567286	45587151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039_45586234_45586896
39581	chr9	-	539	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	243	-14	-243	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCAAAGAAGTGGGGCTT	NA	False	NA	NA	False	NA	NA	NA	50256282	50255743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255700_50256300
39583	chr12	+	1196	9	FSM	ENSMUSG00000021111.16	ENSMUST00000163805.2	1170	9	-29	3	-29	-3	multi-exon	FALSE	canonical	3	944	junction_8	273.366512213914	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCCTGTATATTTTTTT	4462	False	NA	NA	False	NA	NA	NA	105765914	105777668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295
39584	chr10	+	1713	12	NNC	ENSMUSG00000019794.14	novel	1774	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	118.468603086874	1192	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTGTTTCAATTTAGCA	NA	False	NA	NA	False	NA	NA	NA	7601771	7638912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553_7638618_7638669
39585	chr17	-	1321	8	ISM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	79	8	-7	-8	intron_retention	FALSE	canonical	3	712	junction_2	52.5458012070403	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCAGGCTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46558901	46554853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654
39586	chr7	+	2771	16	NIC	ENSMUSG00000035064.18	novel	6580	18	NA	NA	26	-10	combination_of_known_junctions	FALSE	canonical	3	5	junction_13	22.1493917649121	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAAACAGGTTTGGCCT	NA	False	NA	NA	False	NA	NA	NA	120442079	120503214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120494406_120494532_120498590_120498770_120502504
39589	chr7	+	2284	13	ISM	ENSMUSG00000030852.19	ENSMUST00000207282.2	3464	15	36575	3	-43	-3	3prime_fragment	FALSE	canonical	3	280	junction_9	29.1046960701075	2	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCGAGTGTGGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	130331069	130366511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
39590	chr11	+	4010	1	NIC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	8	-5160	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTATGTTGTCAGGTCT	NA	False	NA	NA	False	NA	NA	NA	105017312	105021322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_105017300_105021300
39592	chr11	-	804	3	NNC	ENSMUSG00000041278.11	novel	1965	8	NA	NA	-2	-177	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	388.5	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATGTGCTAGCCACCAAA	NA	False	NA	NA	False	NA	NA	NA	43638821	43621012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_43621381_43635911_43636275_43638748
39593	chr13	-	1384	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	8	-50	8	50	mono-exon	FALSE	NA	NA	NA	NA	NA	1	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCAGGCACTGATGCTTC	NA	False	NA	NA	False	NA	NA	NA	112731610	112730226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112730200_112731600
39594	chr2	+	2932	6	FSM	ENSMUSG00000037902.19	ENSMUST00000160276.2	876	6	-24	-2032	21	-4	multi-exon	FALSE	canonical	3	15	junction_2	39.9729908813439	86	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTAACAATAATGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	129435508	129474136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_129435615_129450823_129451181_129460376_129460491_129463122_129463148_129469865_129469906_129471846
39595	chr8	+	812	1	Antisense	novelGene_ENSMUSG00000031858.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGCAAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	70468871	70469683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_70468900_70469700
39596	chr6	-	2504	18	NNC	ENSMUSG00000015112.16	novel	3121	18	NA	NA	-16	-576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	195.958296530764	1	94	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTGAGTATGTTTAAAG	4	True	NA	NA	False	NA	NA	NA	6217134	6041794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109182_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
39598	chr19	+	2790	7	FSM	ENSMUSG00000034445.9	ENSMUST00000168445.2	1474	7	-34	-1282	-28	1	multi-exon	FALSE	canonical	3	16	junction_1	29.6516816086748	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCTCTTTTGTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	10554783	10567194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
39599	chr9	-	1138	7	NNC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3133.1283975534	2	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAAGAGATTGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	89996673	89973728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976417_89985707_89985825_89989287_89989356_89992178_89992226_89996588
39600	chr12	+	2192	9	NNC	ENSMUSG00000033373.17	novel	2613	12	NA	NA	-11991	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	107.295663355981	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	1090	False	NA	NA	False	NA	NA	NA	76921840	76968186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76921898_76934515_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
39601	chr8	-	5265	30	NNC	ENSMUSG00000079146.3	novel	702	3	NA	NA	-136757	5954	intron_retention	FALSE	non_canonical	0	0	junction_1	0	25	17	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCCACTGAGACTGGGAG	NA	False	NA	NA	False	NA	NA	NA	13070483	12923923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_12924014_12929878_12930146_13013157_13013245_13022975_13023091_13034856_13034951_13043828_13043947_13046607_13046727_13047245_13047394_13048366_13048492_13049946_13050062_13050740_13050863_13051281_13051473_13051809_13052000_13052634_13052796_13053572_13053647_13053882_13053960_13055447_13055515_13056722_13056839_13057682_13057754_13059465_13059557_13059650_13059745_13060413_13060542_13061378_13061601_13061728_13061826_13062802_13062878_13062995_13063062_13063531_13063649_13067344_13067466_13068054_13068171_13068692
39603	chr8	-	1237	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	27	-62	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	909.417822296333	37	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGGTCCAAGGCCATG	NA	False	NA	NA	False	NA	NA	NA	108315063	108307074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307127_108307375_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
39604	chr19	+	2798	10	FSM	ENSMUSG00000025212.18	ENSMUST00000111954.11	2867	10	49	20	49	-19	multi-exon	TRUE	canonical	0	0	junction_3	32.4961536185439	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGCAATCCTGTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	45036063	45044802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_45036330_45037542_45037707_45038182_45038354_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
39606	chr14	-	2290	5	FSM	ENSMUSG00000033111.17	ENSMUST00000163392.3	2452	5	61	101	-1	7	multi-exon	FALSE	canonical	3	65	junction_4	38.2295697072306	456	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAAGCTTTGTGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	10185529	10166632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185505
39607	chr2	-	2100	10	ISM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	65	354	65	-354	intron_retention	FALSE	canonical	3	287	junction_6	14.4435897183012	498	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAGGTTTTACATGCT	NA	False	NA	NA	False	NA	NA	NA	155571330	155543950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810
39608	chr9	-	2105	5	NNC	ENSMUSG00000032199.14	novel	2200	4	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1012.76660070324	1131	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCCGAGCTCATGGCGA	2485	False	NA	NA	False	NA	NA	NA	71393202	71385751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_71386823_71388623_71388829_71390448_71391088_71392965_71393084_71393130
39609	chr18	+	1728	2	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	716	-119	intron_retention	FALSE	canonical	3	8261	junction_1	0	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAAGTTAAAGGTCTTC	NA	False	NA	NA	False	NA	NA	NA	75134263	75136332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_75135924_75136264
39610	chr7	-	2870	6	NNC	ENSMUSG00000066838.8	novel	2777	5	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	23.1119016958796	105	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGACTATTGTGTCACT	NA	False	NA	NA	False	NA	NA	NA	7212997	7205112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7210638_7210729_7212716
39611	chr10	-	1947	12	FSM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	0	14	0	-14	multi-exon	FALSE	canonical	2	10	junction_11	40.2069029063706	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAACTATTTTAATAAA	NA	False	NA	NA	False	NA	NA	NA	13428864	13399899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428692
39612	chr11	-	1719	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139378.2	773	3	451	-1397	451	-151	multi-exon	FALSE	canonical	3	13934	junction_1	171	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTCATGGGTGGGCTTA	NA	False	NA	NA	False	NA	NA	NA	115914848	115912937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707
39613	chr2	+	3529	17	NNC	ENSMUSG00000068040.11	novel	3896	18	NA	NA	-11477	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	130.662718836514	1	208	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTTCTGGTCCAATT	6235	False	NA	NA	False	NA	NA	NA	153020841	153052328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037237_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
39614	chrX	+	3112	21	NNC	ENSMUSG00000031066.11	novel	3467	21	NA	NA	0	-289	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	89.6598572383427	2	121	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTGTTAAGTATCCATAAA	NA	False	NA	NA	False	NA	NA	NA	20570172	20586487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20580007_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584597_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586014
39618	chr7	+	2001	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	3	3	3	0	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	531	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	78545684	78558126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
39619	chr16	-	1441	5	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	-3	634	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	900.615761576489	19	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGTGACTGATGCAATAT	NA	False	NA	NA	False	NA	NA	NA	22084679	22064563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22065939_22065963_22073278_22073321_22073733_22073868_22084490
39620	chr10	-	2227	13	Antisense	novelGene_ENSMUSG00000006345.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAAGGCTAAGTCCCCATC	NA	False	NA	NA	False	NA	NA	NA	75422028	75404496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_75404601_75409444_75409576_75410055_75410230_75411782_75411913_75412047_75412135_75414560_75414755_75415058_75415215_75416332_75416486_75417128_75417265_75420650_75420842_75420991_75421331_75421421_75421544_75421718
39621	chr5	-	2774	11	NNC	ENSMUSG00000039753.17	novel	2858	11	NA	NA	9	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	169.180495329692	1	98	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAACTTTACCAAGCAAT	8887	False	NA	NA	False	NA	NA	NA	43939433	43901976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939312
39622	chr8	-	1029	2	Genic_Genomic	ENSMUSG00000063696.8	novel	954	1	NA	NA	-73	67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592503	103591409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_103592140_103592204
39623	chr13	-	5298	4	FSM	ENSMUSG00000057842.15	ENSMUST00000168892.9	4040	4	9	-1267	-1	0	multi-exon	FALSE	canonical	2	3	junction_1	2.05480466765633	55	90	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACACAAAACTCAGTT	3622	False	NA	NA	False	NA	NA	NA	67480625	67461061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67466042_67468335_67468432_67468891_67469019_67480530
39624	chr12	+	1454	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	43	1	-4	-1	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	3	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTTTTGGTCTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	80992348	80997276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
39626	chr4	+	1727	7	NIC	ENSMUSG00000028797.21	novel	1366	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	320.101372831934	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3197	False	NA	NA	False	NA	NA	NA	129494493	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129494525_129494775_129494928_129495199_129495419_129495662_129495755_129495987_129496055_129500879_129500973_129501248
39627	chr17	-	1575	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	2070	0	-2070	multi-exon	FALSE	canonical	3	548	junction_7	40.8821102534533	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTTTTTTTCCTAAAA	NA	False	NA	NA	False	NA	NA	NA	56597511	56586545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
39628	chr9	+	1605	9	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	21	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.514274957871	42	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCTAGTGACTCTGAGT	389	False	NA	NA	False	NA	NA	NA	45281503	45307445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306784_45306934
39629	chr8	+	3274	10	NNC	ENSMUSG00000002948.20	novel	3525	12	NA	NA	-13	0	intron_retention	FALSE	non_canonical	0	0	junction_9	99.7842116213226	7	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4288815	4297897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4294956_4295748
39630	chr17	+	2698	6	NNC	ENSMUSG00000035868.10	novel	4354	6	NA	NA	29	815	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	8.84533775499839	29	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCATGTCTTGCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	21869573	21882271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21869695_21871186_21871266_21875011_21875249_21876434_21876528_21877828_21877956_21880230
39631	chr8	-	2437	5	Intergenic	novelGene_1698	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	69	junction_1	27.8511669414407	224	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCCATTTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	89779697	89772259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89774095_89774349_89774422_89775330_89775532_89776215_89776356_89779508
39632	chr7	-	1565	6	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	0	3114	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	132.315683121843	8	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATACATCATAGTGACACT	NA	False	NA	NA	False	NA	NA	NA	81439213	81428815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81429382_81429793_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
39633	chr9	+	3308	21	FSM	ENSMUSG00000023259.18	ENSMUST00000239562.1	2659	21	-654	5	0	0	multi-exon	TRUE	canonical	3	10	junction_1	9.81121806912883	58	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGGCTCTGCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	108731241	108742112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108732034_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
39634	chr1	-	2964	7	NNC	ENSMUSG00000026484.14	novel	3160	7	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	249.880415843704	1	134	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGTTATTAGATGTGTA	NA	False	NA	NA	False	NA	NA	NA	151376549	151345158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151347169_151347388_151347496_151348791_151349096_151351890_151352107_151352622_151352781_151354287_151354377_151376469
39635	chr14	-	768	1	Antisense	novelGene_ENSMUSG00000022010.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCACAGAGCTCCTCGG	NA	False	NA	NA	False	NA	NA	NA	76745187	76744419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76744400_76745200
39636	chr14	+	4400	9	FSM	ENSMUSG00000022139.18	ENSMUST00000227594.2	2334	9	6	-2072	2	1	multi-exon	FALSE	canonical	1	1	junction_1	11.1292126855407	35	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTTGCGGTCTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	120543869	120669110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_120543954_120562205_120562825_120616561_120616727_120622802_120623004_120626311_120626576_120633123_120633178_120633862_120634017_120642049_120642145_120666346
39637	chr17	+	2156	7	NIC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	2	-2	intron_retention	FALSE	canonical	3	70	junction_1	8.17856276425687	15	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCAGTGTCTGCTGGGGG	NA	False	NA	NA	False	NA	NA	NA	26048039	26050739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26049181_26049273_26049409_26049483
39638	chr3	-	1121	7	FSM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	0	18	0	-7	multi-exon	FALSE	canonical	3	1573	junction_5	145.593040126695	20	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGCTAAAGGTCTTAGT	7190	False	NA	NA	False	NA	NA	NA	89906004	89902770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
39639	chr15	+	2324	10	NNC	ENSMUSG00000023010.16	novel	1148	11	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	589.988888784262	1	92	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAACCTTTGCTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	99290866	99307919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306368
39640	chr4	-	2729	18	Antisense	novelGene_ENSMUSG00000028886.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACCAGTCAATCGTCT	NA	False	NA	NA	False	NA	NA	NA	132449445	132366297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_132366464_132383999_132384098_132389203_132389248_132394463_132394546_132397499_132397567_132400206_132400343_132408065_132408203_132417013_132417100_132420270_132420455_132422055_132422195_132426340_132426429_132428334_132428420_132431660_132431720_132434271_132434434_132437254_132437367_132439148_132439274_132446521_132446628_132448592
39641	chr9	+	2058	8	FSM	ENSMUSG00000032123.6	ENSMUST00000215050.2	2050	8	-20	12	8	-12	multi-exon	FALSE	canonical	3	5	junction_1	96.7247303919104	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTGTGATAGCATAAAAGA	3782	False	NA	NA	False	NA	NA	NA	44238149	44245179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44238503_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
39642	chr11	-	2408	25	NNC	ENSMUSG00000018340.14	novel	2471	25	NA	NA	-11	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	137.111243359382	2	94	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAACCTCTGTCTATGAAA	NA	False	NA	NA	False	NA	NA	NA	54924282	54869953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885764_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
39643	chr11	-	2745	2	FSM	ENSMUSG00000035455.13	ENSMUST00000171080.8	2844	2	17	82	3	-82	multi-exon	FALSE	canonical	3	48	junction_1	0	1	117	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTGCTTCATTTTGCT	NA	False	NA	NA	False	NA	NA	NA	11758945	11750369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11753064_11758894
39645	chr5	-	1518	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	29	1	-9	-1	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	2114	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGCTTGCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	130284342	130274572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
39646	chr13	-	1303	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.816642312352	2	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAACGGTGTCCTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312144_34312215_34312515_34312854_34312861_34314275
39647	chr7	-	2039	10	NNC	ENSMUSG00000030605.16	novel	2125	10	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	446.964687753703	2	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACCCTCTGTGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	78798730	78783520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793029_78793137_78794994_78795127_78795369_78795493_78798642
39648	chr14	-	1703	4	NIC	ENSMUSG00000021811.8	novel	1631	5	NA	NA	-7	-222	intron_retention	FALSE	canonical	3	896	junction_1	23.9768406778059	774	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGGTGGATTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	20438951	20434927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20435955_20438024_20438280_20438367_20438509_20438671
39649	chr2	+	3550	1	Antisense	novelGene_ENSMUSG00000005510.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGCCACGGAGCCCCAAG	NA	False	NA	NA	False	NA	NA	NA	90731479	90735029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_90731500_90735000
39650	chr7	+	3320	4	NNC	ENSMUSG00000035585.17	novel	480	3	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.9705627484771	12	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTATTTTGAGTCCTT	2715	False	NA	NA	False	NA	NA	NA	3697303	3704009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3697403_3698506_3698621_3700823_3701288_3701366
39651	chr9	+	2009	6	NIC	ENSMUSG00000045594.11	novel	2806	15	NA	NA	40	-29885	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	150.774798955263	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATACACTGAGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	114230215	114273560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_114230338_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076
39652	chr12	-	2703	9	FSM	ENSMUSG00000002996.18	ENSMUST00000167458.9	2733	9	4	26	2	-26	multi-exon	FALSE	canonical	3	134	junction_8	33.3164280048147	37	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGATGTGTTGGACTT	NA	False	NA	NA	False	NA	NA	NA	32000218	31979407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
39654	chr11	+	2616	2	ISM	ENSMUSG00000020346.17	ENSMUST00000081794.7	2976	3	1213	0	228	0	3prime_fragment	FALSE	canonical	3	29	junction_1	0	62	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTGTGTGTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	49136285	49153854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_49136445_49151397
39656	chr8	+	2327	14	NNC	ENSMUSG00000025316.17	novel	1521	12	NA	NA	-1678	-5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	85.4764578821034	3	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCACAGAGGCTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	122674810	122752911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_122674876_122676524_122676660_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
39657	chr18	-	2065	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	19	0	2	0	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	136	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTACTGTTCTTTCTA	NA	False	NA	NA	False	NA	NA	NA	34784769	34764003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
39658	chr11	+	2082	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	15	0	15	0	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	744	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	NA	False	NA	NA	NA	100513716	100518433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
39659	chr19	-	1760	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	56	801	56	-349	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACTTTGTGCATGACTG	NA	False	NA	NA	False	NA	NA	NA	15902367	15882842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
39660	chr14	-	3859	20	NNC	ENSMUSG00000022020.16	novel	13223	20	NA	NA	0	-305	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	50.2671533270098	1	54	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCTTGTTTATATCTT	NA	False	NA	NA	False	NA	NA	NA	79628132	79571948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620796_79622093_79622199_79624461_79624547_79628001
39661	chr1	+	1748	10	NNC	ENSMUSG00000026617.17	novel	1226	10	NA	NA	3	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	107.148333781253	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAAGCTGGGTAATTGC	NA	False	NA	NA	False	NA	NA	NA	185064406	185089962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674_185088904_185089200
39662	chr7	-	1642	3	NNC	ENSMUSG00000054753.10	novel	3361	10	NA	NA	6423	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	67	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGACTTTATTTTTCT	9088	False	NA	NA	False	NA	NA	NA	3207908	3204500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205935_3206163_3206208_3207744
39665	chr10	+	1653	6	NNC	ENSMUSG00000060904.15	novel	2080	6	NA	NA	305	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	489.878107287925	7	19	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	88567234	88579956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577826_88578884
39666	chr7	-	1845	12	NIC	ENSMUSG00000038371.16	novel	733	6	NA	NA	-13474	-6595	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	26.7745407627816	1	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGTAAACCCATCCAATA	9195	False	NA	NA	False	NA	NA	NA	109977267	109947128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_109947190_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170
39667	chrX	-	1898	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	134	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	467.530029932719	1	60	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGGTTGTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	47602169	47563823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_47564066_47564439_47564637_47566658_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574322_47574412_47575022_47575108_47583615_47583707_47585956_47586093_47586210_47586336_47588648_47588749_47593686_47593830_47602112
39668	chr5	+	817	4	NNC	ENSMUSG00000066613.15	novel	749	4	NA	NA	-4	-718	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	107.591821250502	16	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8366	False	NA	NA	False	NA	NA	NA	110144382	110156251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110144497_110154809_110154937_110155121_110155183_110155736
39669	chr11	+	1888	9	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	10	787	intron_retention	FALSE	canonical	0	0	junction_2	517.817520343798	1	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCATTCACAAATAAATAGA	NA	False	NA	NA	False	NA	NA	NA	109541756	109558589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544604_109544778_109551873_109551953_109552113_109552176_109553101_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
39670	chr2	+	4267	10	FSM	ENSMUSG00000027540.14	ENSMUST00000126839.8	4292	10	25	0	2	0	multi-exon	FALSE	canonical	1	2	junction_2	47.9021636666927	193	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGTGATGTGCTTGCCT	1130	False	NA	NA	False	NA	NA	NA	167774316	167821305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167774477_167793875_167794000_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
39671	chr4	-	2070	14	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	-8	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	128.166589079264	1	50	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCGTCCCACTTGTAATAA	NA	False	NA	NA	False	NA	NA	NA	149251125	149234483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235038_149235109_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244516_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
39674	chr6	-	2243	6	Antisense	novelGene_ENSMUSG00000030120.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGTCACGACGGACGGCCC	7106	False	NA	NA	False	NA	NA	NA	124913000	124908348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_124908548_124909059_124909140_124909373_124909499_124909737_124909775_124910915_124910970_124911252
39675	chr2	-	4278	6	ISM	ENSMUSG00000025314.17	ENSMUST00000111493.8	7124	22	24881	26	-16010	-26	3prime_fragment	FALSE	canonical	3	61	junction_3	6.54217089351845	42	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAATATAAAAATATGTC	NA	False	NA	NA	False	NA	NA	NA	90276799	90263258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_90266913_90270200_90270337_90270968_90271130_90274763_90274884_90276499_90276635_90276727
39676	chr2	+	2094	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	-26	-7	-26	7	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	3197	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTCTGACAGATAACTGG	1962	False	NA	NA	False	NA	NA	NA	142904932	142914780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
39677	chr2	-	3239	9	ISM	ENSMUSG00000039671.19	ENSMUST00000109269.8	6188	24	70171	-1155	43856	1	3prime_fragment	FALSE	canonical	3	58	junction_8	38.060601348376	1	138	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	165650186	165626073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438
39678	chr8	-	1946	12	NNC	ENSMUSG00000040263.17	novel	2078	12	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	56.1909377711683	3	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTTTTCTTTCTTCTAC	476	False	NA	NA	False	NA	NA	NA	122556268	122523071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556192
39679	chr7	+	1483	10	NIC	ENSMUSG00000066979.7	novel	2128	9	NA	NA	0	13	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	664.271716679438	3842	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTGTTTGTAAACATT	NA	False	NA	NA	False	NA	NA	NA	131162108	131172906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131164092_131165062_131165215_131165361_131165435_131167921_131168081_131169912_131170091_131170233_131170451_131172607
39680	chr8	-	2316	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	162	52	7	-52	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	1	95	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGTACTGCCGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	96615013	96590813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
39681	chr11	+	2064	11	NNC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	196	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	291.191706612671	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAAGCCGGCGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	76837089	76878203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859535_76862730_76862829_76877336
39684	chr7	-	1152	6	Genic_Genomic	ENSMUSG00000108688.2	novel	1016	1	NA	NA	-1833	2876	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGGGAGACGGGCGGGG	NA	False	NA	NA	False	NA	NA	NA	121769100	121763375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_121763461_121766817_121766974_121767783_121767863_121768048_121768204_121768300_121768485_121768607
39685	chr10	-	1717	4	Antisense	novelGene_ENSMUSG00000001436.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGGAGGGGTGCACCAGG	NA	False	NA	NA	False	NA	NA	NA	76886254	76877905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_76878400_76878608_76878809_76880594_76880733_76885369
39686	chr10	-	2259	14	Antisense	novelGene_ENSMUSG00000006345.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	59	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTCCAGCCCTTCAGAAG	NA	False	NA	NA	False	NA	NA	NA	75422025	75399932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_75400089_75400651_75400738_75409442_75409576_75410055_75410230_75411782_75411913_75412047_75412135_75414560_75414755_75415058_75415215_75416332_75416486_75417128_75417263_75420755_75420844_75420992_75421331_75421421_75421544_75421717
39687	chr11	+	1542	2	Antisense	novelGene_ENSMUSG00000018727.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGCTGGTCCAGTAAA	NA	False	NA	NA	False	NA	NA	NA	113588999	113591710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_113589492_113590660
39688	chr10	-	2252	11	FSM	ENSMUSG00000019813.17	ENSMUST00000189770.7	2232	11	-20	0	-17	0	multi-exon	FALSE	canonical	3	12	junction_10	72.0486641097529	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	109	False	NA	NA	False	NA	NA	NA	41685884	41594836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
39690	chr7	+	2718	7	Antisense	novelGene_ENSMUSG00000047554.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCGCTCCCGCACGCCCAG	NA	False	NA	NA	False	NA	NA	NA	109573054	109585501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_109574163_109575805_109575937_109577912_109578690_109580195_109580324_109581861_109581984_109582724_109582843_109585167
39691	chr9	+	3192	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	43	195	1	-195	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	2	128	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACCAAATTGTGTAAA	30	False	NA	NA	False	NA	NA	NA	50768279	50792536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
39693	chr1	-	1395	12	NNC	ENSMUSG00000013593.13	novel	1845	12	NA	NA	19	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	417.010969592324	10	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGCTTGTAATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	171074672	171062426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064790_171065890_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
39695	chr11	-	1896	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	50	6	-3	-5	multi-exon	FALSE	canonical	3	5636	junction_4	454.292680988809	3	104	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACCATTGTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	120239318	120236521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
39699	chr12	+	2029	8	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	-3	-130	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	190.122302205497	13	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTACTTGTATTAAAGTT	NA	False	NA	NA	False	NA	NA	NA	59113704	59120654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117028_59119307
39700	SIRV6	+	1158	6	FSM	SIRV6A	SIRV613	1311	6	0	153	0	-19	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTGGAAATTAAAGTGGT	NA	False	NA	NA	False	NA	NA	NA	3105	11671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
39702	chr1	+	1937	7	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	0	-344	intron_retention	FALSE	canonical	2	5	junction_1	74.126955660917	3	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACTTGGGACACCTGG	NA	False	NA	NA	False	NA	NA	NA	165957806	165993734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165957941_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
39703	chr14	+	2411	9	NIC	ENSMUSG00000036291.7	novel	2544	9	NA	NA	7	-16	intron_retention	FALSE	canonical	3	13	junction_8	38.1042976578758	128	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAACTCAAAGGCATACA	NA	False	NA	NA	False	NA	NA	NA	49304005	49328320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701_49323817_49327656
39704	chr14	+	1403	4	FSM	ENSMUSG00000035960.15	ENSMUST00000154288.3	935	4	9	-477	9	0	multi-exon	FALSE	canonical	3	1054	junction_2	68.6310587286997	354	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	198	False	NA	NA	False	NA	NA	NA	51162443	51164596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_51162782_51162973_51163162_51163617_51163811_51163912
39705	chr4	+	1972	9	NNC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	2	4652	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	112.81372921768	3	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATACAAGACACAAAGGGA	-29	True	NA	NA	False	NA	NA	NA	44981396	44995386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44994334
39708	chr17	-	1936	6	NNC	ENSMUSG00000024026.14	novel	9865	6	NA	NA	-13	-2	intron_retention	FALSE	non_canonical	0	0	junction_2	1293.55531771935	3	77	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATAAAGGTCTGGGCAGC	NA	False	NA	NA	False	NA	NA	NA	30831646	30811842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30813201_30815347_30815425_30816774_30816847_30819012_30819154_30822993_30823077_30831441
39709	chr5	-	2740	19	NNC	ENSMUSG00000037364.13	novel	3001	19	NA	NA	233	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	338.009062812242	1	114	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTGTGTGCTGTATGTC	8743	False	NA	NA	False	NA	NA	NA	137305450	137293974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295038_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297140_137297826_137297918_137298008_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301301_137305307
39710	chr12	-	1807	5	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-2	0	intron_retention	FALSE	canonical	3	12102	junction_4	2451.83017101511	16	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685879	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28685663_28685854
39711	chrX	+	630	6	NNC	ENSMUSG00000008682.14	novel	855	6	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4731.21874362199	10	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGCTTATGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73314583	73316732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73314591_73315265_73315325_73315405_73315484_73315812_73315924_73316277_73316441_73316520
39712	chr9	+	1038	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	8	-155	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6758.66541891948	3	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAAACCCTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	64080664	64085793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082510_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
39713	chr4	-	2376	9	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	24	junction_8	12.1140414395857	198	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTCAGTGTCTGTTCCT	8657	False	NA	NA	False	NA	NA	NA	152112140	152104233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104736_152105000_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
39714	chr8	-	3953	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21249	-5	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	1	210	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGTGAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	81585876	81491073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
39715	chr5	-	3683	18	FSM	ENSMUSG00000035266.17	ENSMUST00000044684.14	3689	18	-1	7	-1	-1	multi-exon	FALSE	canonical	3	40	junction_16	11.2714232774287	76	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGCGCTCTGGGTGATT	NA	False	NA	NA	False	NA	NA	NA	100946465	100910017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100910503_100912806_100912942_100914553_100914668_100916147_100916322_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944219_100944929_100946159
39716	chr8	+	1971	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	48	1552	29	-6	multi-exon	TRUE	canonical	3	53	junction_4	8.56504524214554	222	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATACTCAGTGTTAACTA	NA	False	NA	NA	False	NA	NA	NA	57004172	57045422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
39717	chr7	-	2534	5	FSM	ENSMUSG00000030869.12	ENSMUST00000033157.10	3479	5	54	891	-4	-891	multi-exon	FALSE	canonical	3	149	junction_1	2248.42489311963	362	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGGAGATCAGCCTCTG	6412	False	NA	NA	False	NA	NA	NA	121701055	121685516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121687562_121690808_121690909_121692839_121692928_121695831_121695955_121700877
39718	chr4	+	2504	1	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	41803	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTTGCGTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	99649191	99651695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99649200_99651700
39719	chr5	+	3154	3	Genic_Genomic	ENSMUSG00000106834.2	novel	1155	1	NA	NA	1128	3675	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGCAGCTGCTTCACACC	NA	False	NA	NA	False	NA	NA	NA	33810572	33814274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_33811958_33812055_33812216_33812665
39720	chr6	-	1060	1	FSM	ENSMUSG00000051695.7	ENSMUST00000053015.7	1830	1	768	2	768	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCGTATTTGAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	86502535	86501475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86501500_86502500
39722	chr17	-	2816	15	NIC	ENSMUSG00000025733.18	novel	3189	19	NA	NA	-30	0	intron_retention	FALSE	canonical	3	133	junction_14	12.1808230009138	3	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCTTGGATTTTGATCT	6045	False	NA	NA	False	NA	NA	NA	26063467	26057813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26060111_26060335_26060457_26060532_26060642_26060730_26061066_26061153_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
39723	chr19	-	1924	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-34	-37	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1448.31520654173	1	90	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTGCATGGAAAACATTAA	NA	False	NA	NA	False	NA	NA	NA	15902328	15882530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892407_15894533_15894598_15895578_15895776_15896818_15896889_15898299_15898361_15902227
39724	chr17	+	3106	13	FSM	ENSMUSG00000069135.12	ENSMUST00000097419.10	3505	13	57	342	18	-13	multi-exon	FALSE	canonical	3	46	junction_7	116.477107908235	24	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAGTATCCTCCATTTTA	NA	False	NA	NA	False	NA	NA	NA	8384389	8415294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8394350_8394411_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
39725	chr2	+	1780	10	Antisense	novelGene_ENSMUSG00000027195.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	168	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATGAATGGGACGAGG	NA	False	NA	NA	False	NA	NA	NA	93863038	93988265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_93864006_93864270_93864422_93874217_93874283_93875701_93875788_93882598_93882632_93895896_93895944_93896753_93896819_93913511_93913620_93947774_93947822_93988054
39726	chr15	+	1178	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	-44	-12	-6	0	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	3391	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59246089	59473533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
39728	chr2	+	1992	16	Antisense	novelGene_ENSMUSG00000104406.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAACTAGGAGTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	12352338	12424239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_12352853_12352900_12353012_12355736_12355811_12360086_12360176_12361715_12361789_12369257_12369330_12386912_12386993_12391414_12391491_12400989_12401070_12402303_12402377_12404832_12404949_12405835_12405888_12408808_12408980_12410670_12410731_12414810_12414891_12423968
39729	chr15	+	2283	3	FSM	ENSMUSG00000022560.10	ENSMUST00000230994.2	2889	3	-134	740	-2	-740	multi-exon	FALSE	canonical	3	120	junction_1	0.5	289	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGTTAATCCCATGAG	NA	False	NA	NA	False	NA	NA	NA	76423029	76425590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76423396_76423582_76423803_76423893
39730	chr6	-	3629	6	FSM	ENSMUSG00000030145.15	ENSMUST00000069292.14	3683	6	43	11	13	-11	multi-exon	FALSE	canonical	3	13	junction_5	4.48998886412873	34	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTGGAATTTCATTGT	NA	False	NA	NA	False	NA	NA	NA	118432446	118404290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_118407356_118409817_118409908_118410265_118410393_118430806_118430849_118431637_118431873_118432376
39731	chr4	+	1591	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	0	-7	0	7	multi-exon	FALSE	canonical	3	1067	junction_7	51.5407066738946	1516	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGACTTGGATTTATT	NA	False	NA	NA	False	NA	NA	NA	130253924	130283826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
39732	chr2	-	1427	3	ISM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	468	4	420	-4	3prime_fragment	FALSE	canonical	3	1343	junction_2	31.5	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	NA	False	NA	NA	NA	25114246	25112175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25113381_25113945_25114057_25114135
39733	chr17	+	1651	5	NNC	ENSMUSG00000046711.17	novel	1681	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2226.4405449057	1	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAAGGAGCATTCA	NA	False	NA	NA	False	NA	NA	NA	27775606	27782648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781420
39734	chrX	+	4407	22	NNC	ENSMUSG00000025332.15	novel	6449	26	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	121.392823869761	8	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGCGCTCCTTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	151016241	151057524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053506_151056710
39735	chr11	+	2857	12	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	46	-7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	152.87595576558	5	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCAGCCTCCGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	102139753	102156006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102139919_102141504_102141556_102145155_102145446_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102154746_102154820_102155460
39736	chr8	-	1645	19	NIC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	-3	3	combination_of_known_splicesites	FALSE	canonical	3	7	junction_7	178.873265363297	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATATAGTCTTGTTGTCTG	3359	False	NA	NA	False	NA	NA	NA	105261243	105237662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
39738	chr9	+	3123	8	NNC	ENSMUSG00000032531.16	novel	4328	10	NA	NA	73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	75.1900992179699	179	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGATGTCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	102594939	102610612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_102595102_102597279_102597382_102602294_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
39740	chr18	-	3088	25	Antisense	novelGene_ENSMUSG00000033628.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	102	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCGCCCATCTGCCATAG	NA	False	NA	NA	False	NA	NA	NA	30481127	30405911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_30406072_30407321_30407511_30410024_30410168_30415008_30415138_30421801_30421889_30423521_30423618_30426109_30426189_30426674_30426777_30427388_30427482_30431625_30431810_30435970_30436126_30436616_30436704_30438023_30438095_30444271_30444357_30445591_30445720_30449890_30450026_30452551_30452680_30453283_30453358_30455225_30455288_30456573_30456655_30457592_30457668_30466209_30466391_30469154_30469233_30476992_30477130_30480778
39741	chr17	+	1811	5	NNC	ENSMUSG00000092558.4	novel	2054	4	NA	NA	-10	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	102.056356979857	766	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTTTTGGCCTTCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	47922522	47935176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809_47934113_47934172
39742	chr11	-	2938	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	205	143	200	-74	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	1	126	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTTTTTTTATATAT	9366	False	NA	NA	False	NA	NA	NA	102207301	102196892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
39743	chr11	+	1267	9	NNC	ENSMUSG00000020407.14	novel	430	5	NA	NA	206	-5	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	933.373551960843	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATAACACATTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	9068992	9086159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9069170_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
39744	chr8	-	2963	22	FSM	ENSMUSG00000057672.17	ENSMUST00000144258.8	2995	22	33	-1	33	1	multi-exon	FALSE	canonical	3	45	junction_21	57.6705790816251	195	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAGCCTCTGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	84420656	84396718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535_84398599_84398784_84398962_84399930_84400023_84400109_84400186_84400259_84400340_84404152_84404247_84404334_84404477_84404559_84404636_84407582_84407727_84407808_84407919_84410027_84410223_84410631_84410846_84411264_84411411_84413668_84413814_84417677_84417830_84419264_84419566_84420588
39745	chr18	+	2754	2	ISM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	702	27	154	-27	intron_retention	FALSE	canonical	3	28033	junction_1	0	1	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTGTTAATAAATTGCT	NA	False	NA	NA	False	NA	NA	NA	60908454	60911586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_60909624_60910001
39746	chr3	-	1822	3	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-24	5	intron_retention	FALSE	canonical	3	25	junction_2	102.5	817	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGGTCATGGTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	75563062	75554747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75556298_75562696_75562869_75562962
39748	chr10	-	1634	3	NIC	ENSMUSG00000004667.19	novel	1238	5	NA	NA	36	-7	intron_retention	FALSE	canonical	3	2974	junction_1	17.5	2	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAGTTACTGTGGTGCAA	5696	False	NA	NA	False	NA	NA	NA	79875448	79871791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79873219_79874272_79874448_79875416
39749	chr17	-	3316	7	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-30	1080	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	40.2202270837282	81	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGATACAAAAAGATGT	4793	False	NA	NA	False	NA	NA	NA	23805236	23793737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_23796086_23796327_23796430_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
39750	chr16	-	696	2	NNC	ENSMUSG00000004071.14	novel	3953	6	NA	NA	3848	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCAATGACTTTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	4584113	4583329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4583758_4583845
39751	chr2	-	3103	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	5	2343	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	55.3915356550279	115	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	156681807	156672625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681635
39752	chr12	+	1299	9	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	989.562900666249	23	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	NA	False	NA	NA	NA	87313463	87320754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318157_87319387_87319475_87319896_87319999_87320220_87320273_87320364
39753	chr1	-	2648	19	NNC	ENSMUSG00000025968.17	novel	2590	19	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	305.240023952008	1	109	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGATATTAAAGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	63215826	63182756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195487_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208396_63208496_63209208_63209301_63210007_63210074_63215586
39755	chr17	-	1620	5	NIC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-7	-14	intron_retention	FALSE	canonical	3	723	junction_4	23.3385410855092	337	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTCTTTTCAGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	46558901	46554859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46555147_46555231_46556077_46556541_46556675_46557032_46557141_46558654
39756	chr7	-	755	6	ISM	ENSMUSG00000038406.18	ENSMUST00000211735.2	4209	11	811	5757	-32	1555	internal_fragment	FALSE	canonical	3	182	junction_1	6.48074069840786	25	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTGAGCCCACGGGCT	7824	False	NA	NA	False	NA	NA	NA	44663017	44658128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903
39757	chr7	-	3204	5	ISM	ENSMUSG00000038406.18	ENSMUST00000211735.2	4209	11	5750	0	4907	0	3prime_fragment	FALSE	canonical	3	212	junction_4	19.904459299363	66	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGTAGTGGTGTACC	7185	False	NA	NA	False	NA	NA	NA	44658078	44652371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729
39758	chrX	+	2126	2	NNC	ENSMUSG00000031381.17	novel	1086	4	NA	NA	50	-7205	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	6	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATTAAATTATTCAATACA	NA	False	NA	NA	False	NA	NA	NA	163202852	163207627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_163202931_163205579
39759	chr16	-	2755	11	ISM	ENSMUSG00000022948.17	ENSMUST00000123756.8	2408	12	2	20	2	-14	intron_retention	FALSE	canonical	2	8	junction_5	41.8460272905326	1	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACTTTTATATGAAATCA	NA	False	NA	NA	False	NA	NA	NA	93400677	93380364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024
39760	chr13	-	2864	16	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	42	-5	intron_retention	FALSE	canonical	0	0	junction_12	46.064399365333	1	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTATATTCAGACCTTC	NA	False	NA	NA	False	NA	NA	NA	63579434	63459573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63533562_63533602_63545896_63545992_63548047_63548133_63550655_63550892_63579263
39761	chr7	+	1000	8	FSM	ENSMUSG00000030588.13	ENSMUST00000108238.8	1126	8	0	126	0	-126	multi-exon	FALSE	canonical	3	755	junction_1	273.775194535329	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCAGCTCCCACACTCA	6037	False	NA	NA	False	NA	NA	NA	28937753	28946828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
39762	chr5	-	1818	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	-56	7	-32	-7	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	498	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATACTGGTTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	143951727	143924733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
39763	chr13	+	1785	9	FSM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_6	66.7082032062025	726	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGAAGTGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	38388920	38411641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
39765	chr6	+	1393	9	NNC	ENSMUSG00000052738.15	novel	485	3	NA	NA	3630	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	495.88935257777	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTGTGAAGACTTTTT	6231	False	NA	NA	False	NA	NA	NA	73229280	73253890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_73229531_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
39768	chr5	-	3219	2	ISM	ENSMUSG00000046572.11	ENSMUST00000180214.8	1124	3	1388	-1587	1312	1587	3prime_fragment	FALSE	canonical	3	284	junction_1	0	2	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTTCCATAGGTCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	38840781	38829931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_38832197_38839827
39769	chr17	-	2316	12	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	29	-576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	353.631315691946	1	96	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTAAGAACCATGTAAC	NA	False	NA	NA	False	NA	NA	NA	7050154	7006015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007282_7008361_7008455_7008819_7008878_7010098_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
39770	chr19	-	1174	1	NIC	ENSMUSG00000057506.6	novel	778	4	NA	NA	2159	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTTTGGTTTTTG	6990	False	NA	NA	False	NA	NA	NA	44128858	44127684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44127700_44128900
39771	chr19	-	2368	7	NNC	ENSMUSG00000024799.17	novel	1498	10	NA	NA	2	0	intron_retention	TRUE	non_canonical	0	0	junction_1	96.5867485734974	7	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9963	False	NA	NA	False	NA	NA	NA	6117870	6112850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6113132_6113185_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6117053_6117152
39772	chr17	-	1936	12	ISM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	-145	12	-145	-12	intron_retention	FALSE	canonical	3	510	junction_7	62.1588208403639	293	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGCAGGCCCAGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	57318433	57310416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975
39773	chr11	-	1672	8	NIC	ENSMUSG00000040904.11	novel	1688	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	193.976013665481	4997	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	70130640	70126031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130481
39774	chr11	+	2138	6	FSM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	27	355	27	-355	multi-exon	FALSE	canonical	3	26	junction_4	7.30479294709987	3	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTCTTTCTTTCTTTCT	3884	False	NA	NA	False	NA	NA	NA	121312253	121321759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_121312430_121315751_121315904_121316380_121316473_121317446_121317530_121319870_121319994_121320247
39775	chr12	-	3231	6	FSM	ENSMUSG00000084883.3	ENSMUST00000222310.2	4298	6	1064	3	772	-3	multi-exon	TRUE	canonical	3	57	junction_4	9.83056458195561	135	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGAGCCGAGTGTGTAGT	NA	False	NA	NA	False	NA	NA	NA	108240620	108169863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_108172694_108173380_108173480_108174092_108174189_108177773_108177882_108187967_108188042_108240596
39778	chr15	-	1530	7	NNC	ENSMUSG00000018042.19	novel	1982	9	NA	NA	8311	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	762.030055546076	1	78	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGACCCTGCCAGCGTTT	6814	False	NA	NA	False	NA	NA	NA	83046067	83037701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038599_83038694_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045134_83046045
39779	chr15	+	2381	10	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	197	junction_5	32.7549826574353	1	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGATCCTGGCCCGCTGT	4823	False	NA	NA	False	NA	NA	NA	76215540	76219102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76218091_76218213_76218405_76218489_76218661_76218781
39781	chr2	+	734	5	Antisense	novelGene_ENSMUSG00000027239.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCGCTAAGGCCGCTAAG	NA	False	NA	NA	False	NA	NA	NA	91760165	91762079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_91760461_91761162_91761325_91761440_91761600_91761716_91761793_91762037
39782	chr17	-	1782	11	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3150	7347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	71	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGAGCGATGCCGCGGG	NA	False	NA	NA	False	NA	NA	NA	13143419	13135352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136769_13136928_13137057_13138235_13138334_13138699_13138813_13139162_13139339_13139626_13139751_13140985_13141160_13141487_13141620_13142107_13142304_13143026
39783	chr8	+	1423	2	Genic_Genomic	ENSMUSG00000071041.5	novel	1545	1	NA	NA	-63	54	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAATAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	100757126	100758788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_100757287_100757525
39784	chr8	-	1762	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	17	-1370	7	-7	multi-exon	FALSE	canonical	3	281	junction_1	12.1928941054479	1201	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGGTTTTGTGTGTGTG	7436	False	NA	NA	False	NA	NA	NA	84169117	84161130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
39786	chr4	+	1931	16	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	4	0	intron_retention	FALSE	canonical	3	57	junction_1	44.8184485824011	565	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	NA	False	NA	NA	NA	116664938	116676628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675480_116676451
39787	chr3	+	4119	15	FSM	ENSMUSG00000040389.16	ENSMUST00000051145.15	4222	15	90	13	17	-13	multi-exon	FALSE	canonical	3	33	junction_5	8.19064922297845	45	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGACACTCAATCTGTCC	NA	False	NA	NA	False	NA	NA	NA	108498684	108553022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648_108521734_108525805_108526609_108530638_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
39788	chr2	-	1477	5	NIC	ENSMUSG00000027327.17	novel	1241	6	NA	NA	18	7	intron_retention	FALSE	canonical	3	675	junction_3	26.9849495089392	2644	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTAGCGGGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	131001983	130988236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
39789	chr17	+	2137	1	Antisense	novelGene_ENSMUSG00000012296.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGCCAGGTTGCAGTCCA	NA	False	NA	NA	False	NA	NA	NA	46568776	46570913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_46568800_46570900
39792	chr2	+	1764	9	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-154	1	intron_retention	FALSE	canonical	3	25	junction_5	815.904865777867	1	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116596	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118779_130119395_130119545_130119768_130119891_130120075_130120211_130120816
39793	chr18	-	2125	11	NNC	ENSMUSG00000044252.19	novel	2522	12	NA	NA	44	-11	intron_retention	FALSE	canonical	0	0	junction_5	114.544707429021	1	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAGAATATCAAATAAAAA	3153	False	NA	NA	False	NA	NA	NA	12952611	12888405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895781_12896512_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561
39794	chr10	-	6502	21	Antisense	novelGene_ENSMUSG00000036499.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGAAACACACATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	95880968	95832797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_95832953_95838746_95838863_95846633_95846974_95847944_95848095_95849165_95849286_95853865_95854069_95855689_95855892_95857466_95857580_95859755_95859913_95861891_95862034_95862418_95862749_95862912_95863014_95864252_95864448_95867370_95867552_95872437_95872626_95873273_95873406_95874552_95874738_95875379_95875622_95876111_95876233_95877299_95877401_95877940
39795	chr6	-	2004	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	55	26	2	-26	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	1	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGGTGTGGAATGCGTTT	NA	False	NA	NA	False	NA	NA	NA	83294533	83282698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
39796	chr8	+	1895	2	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	1295	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	NA	False	NA	NA	NA	107784832	107787563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107786110_107786945
39798	chr19	-	1968	13	FSM	ENSMUSG00000024926.11	ENSMUST00000236229.2	1386	13	-185	-397	23	-4	multi-exon	FALSE	canonical	3	222	junction_9	61.0948147463342	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGAGCTATCAGGAGTT	3463	False	NA	NA	False	NA	NA	NA	5660242	5653048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
39799	chrX	-	2262	7	NNC	ENSMUSG00000023074.12	novel	1782	7	NA	NA	26	0	intron_retention	FALSE	canonical	0	0	junction_3	44.2056431792242	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTCTCTCTCCGTTC	NA	False	NA	NA	False	NA	NA	NA	52459353	52433474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_52434867_52436580_52436743_52438112_52438218_52444532_52444751_52446286_52446363_52446450_52446705_52459298
39800	chr5	+	2354	2	Antisense	novelGene_ENSMUSG00000051391.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	103	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCAATGCGTGCCGCGG	3320	False	NA	NA	False	NA	NA	NA	135938424	135963453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135940491_135963165
39801	chr6	+	1333	1	ISM	ENSMUSG00000012396.13	ENSMUST00000112581.8	1995	5	5812	0	5733	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122690259	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122690300_122691600
39802	chr1	-	2813	1	Antisense	novelGene_ENSMUSG00000066652.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	60	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCCAGTGCCCACAGAAG	7459	False	NA	NA	False	NA	NA	NA	180726976	180724163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180724200_180727000
39803	chr8	+	2031	16	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	15	-66	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	321.136689484919	1	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	107620297	107649653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625130_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
39804	chr11	+	650	2	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	266	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCAACAGCTGCCTCCTC	6763	False	NA	NA	False	NA	NA	NA	69807547	69808283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69808161_69808246
39805	chr5	+	1481	5	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	-2	intron_retention	FALSE	canonical	3	7748	junction_1	3603.48463296293	25	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121345259_121346453
39806	chr12	+	1485	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	230	1690	-36	-1690	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTAGGCTTCTTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	78908822	78932094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
39807	chr5	-	997	4	Antisense	novelGene_ENSMUSG00000039682.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	92	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTGATGATGACCTTGGG	NA	False	NA	NA	False	NA	NA	NA	45670016	45664537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_45664545_45666773_45666858_45668447_45668557_45669219
39810	chr9	+	1772	13	NIC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	152	-6	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	352.088609427924	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAATGAGTTTGGGTTGC	NA	False	NA	NA	False	NA	NA	NA	59446974	59472386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59447260_59461415_59461509_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
39811	chr14	-	2124	3	ISM	ENSMUSG00000021848.17	ENSMUST00000119070.8	1708	5	4772	-494	131	0	3prime_fragment	FALSE	canonical	3	9	junction_2	17.5	141	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTCTAGTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	48900198	48895133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_48896784_48898755_48898932_48899900
39812	chr11	-	1631	4	NNC	ENSMUSG00000025132.14	novel	2150	6	NA	NA	1012	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1531.57029076551	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120471194	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120470257_120470341_120470406_120470493_120470593_120471048
39813	chr1	-	2768	5	FSM	ENSMUSG00000026389.17	ENSMUST00000112640.8	2752	5	-1	-15	-1	15	multi-exon	FALSE	canonical	3	36	junction_4	6.57647321898295	122	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCCTTTGTTTATTATT	NA	False	NA	NA	False	NA	NA	NA	120193015	120154137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120192961
39814	chr7	-	3273	7	ISM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	628	5	628	-5	3prime_fragment	FALSE	canonical	3	37	junction_5	9.03234926989282	69	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTCCATGGTATGGGT	NA	False	NA	NA	False	NA	NA	NA	111757636	111715228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389
39815	chr9	+	2502	7	NNC	ENSMUSG00000010048.11	novel	2054	11	NA	NA	0	-10	intron_retention	FALSE	canonical	1	2	junction_4	267.696812333157	2	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCCCCCTGTGGCCTTT	NA	False	NA	NA	False	NA	NA	NA	107464924	107470227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107465146_107467101_107467222_107467307_107468310_107468400_107468571_107468766_107468905_107469273_107469571_107469673
39816	chr7	+	2475	11	NNC	ENSMUSG00000030727.13	novel	2234	13	NA	NA	0	2	intron_retention	FALSE	non_canonical	0	0	junction_9	57.8782342508823	357	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGCCTTGTGCCTGCAA	NA	False	NA	NA	False	NA	NA	NA	126028237	126045075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043490_126043694_126044109_126044468
39817	chr4	+	2294	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-31	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	324.116165732117	1	77	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATGCCATTAGGAAC	NA	False	NA	NA	False	NA	NA	NA	124923819	124949158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936414_124936474_124937357_124937517_124938016_124938122_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946644_124947247_124947328_124947938_124948021_124948976
39819	chr9	-	2620	10	NNC	ENSMUSG00000056167.9	novel	3466	16	NA	NA	-2	-139	intron_retention	FALSE	non_canonical	0	0	junction_7	227.305961206476	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTTGTTGTTGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	114469254	114415172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114425672_114425740_114426546_114427904_114430409_114430524_114439712_114439794_114460901_114461052_114461744_114461840_114468986
39820	chr7	-	2674	3	FSM	ENSMUSG00000054381.6	ENSMUST00000067425.6	2684	3	15	-5	15	5	multi-exon	FALSE	canonical	3	22	junction_2	4	94	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTCTGCTCCTCATTTG	930	False	NA	NA	False	NA	NA	NA	126975207	126971703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126973871_126974560_126974675_126974814
39821	chr11	+	2005	8	NIC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	24	-2	intron_retention	FALSE	canonical	3	525	junction_7	8.51649060616507	1136	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTTAAGATCATCTTTAC	9162	False	NA	NA	False	NA	NA	NA	70538084	70542245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540844_70540951_70541046_70541589_70541671_70541747
39822	chr15	-	2795	18	NNC	ENSMUSG00000078937.9	novel	2895	19	NA	NA	450	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	20.8835956548208	91	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGCTCCATGGGACTA	5734	False	NA	NA	False	NA	NA	NA	89309548	89300608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89301183_89301347_89301441_89302034_89302149_89302934_89303088_89303178_89303314_89303393_89303559_89304094_89304212_89304290_89304397_89304894_89305076_89305573_89305744_89306327_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919_89309060_89309390
39823	chr16	+	1958	6	NNC	ENSMUSG00000022744.13	novel	1540	6	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	156.329139957975	434	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGTAGAGTGTCTAAATT	NA	False	NA	NA	False	NA	NA	NA	58548401	58554596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201_58553395_58553436
39824	chr12	+	1234	2	NIC	ENSMUSG00000020630.10	novel	1970	6	NA	NA	3997	-4	intron_retention	FALSE	canonical	3	247	junction_1	0	18	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGACACAGAACACATCTA	NA	False	NA	NA	False	NA	NA	NA	28707647	28709578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_28708295_28708991
39825	chr19	+	4060	24	Genic_Genomic	ENSMUSG00000114796.2	novel	422	2	NA	NA	-4543	214187	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	60	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCTGCTACTCCGAG	5824	False	NA	NA	False	NA	NA	NA	40281871	40502186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_40283560_40284974_40285087_40287904_40287966_40300112_40300310_40302809_40302938_40303063_40303175_40306464_40306513_40313190_40313277_40315893_40316067_40325429_40325482_40338343_40338460_40340722_40340851_40340961_40341013_40351647_40351710_40353437_40353624_40361906_40362061_40365087_40365254_40370968_40371078_40371199_40371229_40381833_40381961_40386985_40387058_40390704_40390755_40439758_40439845_40502118
39826	chr7	-	3331	6	NNC	ENSMUSG00000038930.12	novel	2595	7	NA	NA	-2	236	intron_retention	TRUE	non_canonical	0	0	junction_1	17.9710878913882	33	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTATTCTGAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	79973870	79966107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79966287_79966439_79966799_79967200_79967231_79968606_79970930_79971024_79971092_79973497
39827	chr12	+	2407	13	NIC	ENSMUSG00000021115.16	novel	2520	14	NA	NA	4	-12	intron_retention	FALSE	canonical	2	11	junction_4	349.266572819228	1	61	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTACTTTACTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	105976554	106041447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106037901_106039877_106039938_106041265
39828	chr2	+	1052	7	NIC	ENSMUSG00000019188.17	novel	5204	12	NA	NA	-3148	-3	intron_retention	FALSE	canonical	3	117	junction_2	18.006171781426	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGGGAGCTCTCAGCAG	NA	False	NA	NA	False	NA	NA	NA	152530610	152546953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
39829	chr2	+	2611	7	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	142	-7	intron_retention	FALSE	canonical	3	2327	junction_4	135.603281671204	1	134	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAATGATAAAACCCCAAT	NA	False	NA	NA	False	NA	NA	NA	130116553	130121191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119891_130120075_130120211_130120816
39830	chr8	-	1812	4	NIC	ENSMUSG00000006589.9	novel	929	5	NA	NA	14	-2	intron_retention	FALSE	canonical	3	1410	junction_2	17.9876500843094	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCTGCTTCTCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	123303615	123301377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_123301767_123301875_123301955_123302140_123303361_123303491
39831	chr8	-	1871	5	ISM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	26	5818	4	3459	5prime_fragment	FALSE	canonical	3	650	junction_3	118.797095924101	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCCCAGAGCATTCCTA	NA	False	NA	NA	False	NA	NA	NA	66939145	66931587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
39832	chr5	-	507	4	Antisense	novelGene_ENSMUSG00000029614.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTCAGCAGCTTCCGAG	NA	False	NA	NA	False	NA	NA	NA	121347018	121344777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121344872_121345207_121345256_121346447_121346637_121346842
39833	chr10	+	1429	13	NNC	ENSMUSG00000078427.4	novel	918	11	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_6	1713.19572039767	22	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGAAAAGAAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	128657792	128713483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128678855_128679347_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
39835	chr2	-	2952	4	Antisense	novelGene_ENSMUSG00000032679.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	724	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGACAGTACACAGCAATG	NA	False	NA	NA	False	NA	NA	NA	103947012	103926197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_103926270_103934512_103934593_103941082_103941188_103944317
39836	chr1	+	579	1	Antisense	novelGene_ENSMUSG00000084416.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTCCACCGTCTCCAGA	3247	False	NA	NA	False	NA	NA	NA	65033081	65033660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_65033100_65033700
39837	chr10	-	1221	12	ISM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	25133	121	-7617	96	3prime_fragment	FALSE	canonical	3	274	junction_9	22.0866063898052	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTTCTTGCTTTGTATT	4060	False	NA	NA	False	NA	NA	NA	127987215	127969096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051
39838	chr6	+	3237	13	FSM	ENSMUSG00000030134.12	ENSMUST00000203482.2	2227	13	-35	-975	-35	0	multi-exon	FALSE	canonical	3	24	junction_10	5.92780641459291	64	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	118043344	118068507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066395_118066469_118066776
39839	chr12	+	1718	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	NA	NA	NA	109506895	109538160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
39840	chr5	+	2604	26	NNC	ENSMUSG00000029176.14	novel	3854	28	NA	NA	28	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	142.484839895338	1	105	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATTTTATTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	52991495	53024064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000938_53002665_53002750_53003973_53004061_53005332_53005398_53006071_53006174_53007799_53007901_53012892_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
39841	chr15	+	2894	13	NIC	ENSMUSG00000051934.6	novel	1275	8	NA	NA	96	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	101.953795362845	174	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCACGTGACTCCTTAGCG	NA	False	NA	NA	False	NA	NA	NA	99023897	99111086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_99024038_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
39842	chr8	-	2732	10	FSM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	-51	-3	-6	3	multi-exon	FALSE	canonical	3	71	junction_5	10.9927024053615	141	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTTACGTGTCTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	78337333	78322607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731
39843	chr15	-	2562	16	NNC	ENSMUSG00000023055.11	novel	2824	15	NA	NA	320	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	39.0153246245056	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGATATGTGTAACCATT	NA	False	NA	NA	False	NA	NA	NA	102630246	102615226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102615248_102615417_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630191
39844	chr1	+	2146	1	FSM	ENSMUSG00000098923.2	ENSMUST00000183952.2	2824	1	-35	713	-35	-713	mono-exon	FALSE	NA	NA	NA	NA	NA	435	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATGAGATGCTAATATG	NA	False	NA	NA	False	NA	NA	NA	119453854	119456000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_119453900_119456000
39847	chr11	+	2321	6	NIC	ENSMUSG00000020407.14	novel	1157	9	NA	NA	-86	168	intron_retention	FALSE	canonical	3	102	junction_1	1089.71042024934	1	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTTCTATGAGGGTGAGA	NA	False	NA	NA	False	NA	NA	NA	9068016	9084917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9083349_9084721
39848	chr7	-	3188	12	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	8	-101	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	78.7162494907138	1	146	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTACAGATCTATAGT	9612	False	NA	NA	False	NA	NA	NA	3218923	3204598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211195_3212041_3212201_3213722_3214128_3218840
39849	chr15	-	1152	7	Antisense	novelGene_ENSMUSG00000009585.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	665	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGCGAAAGGGGAACTCT	NA	False	NA	NA	False	NA	NA	NA	79791625	79781892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79782172_79782310_79782425_79783218_79783318_79789639_79789802_79790539_79790804_79791051_79791163_79791502
39850	chr12	-	1712	12	NNC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	13	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	314.251623137619	2	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAATCCTTGTGTATAT	NA	False	NA	NA	False	NA	NA	NA	36206737	36141846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36180049_36180168_36184889_36184955_36206666
39851	chr13	-	2401	4	FSM	ENSMUSG00000021519.12	ENSMUST00000174011.8	2353	4	-45	-3	5	3	multi-exon	FALSE	canonical	3	328	junction_2	10.2306728354819	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTCATTACTGTTTTT	382	False	NA	NA	False	NA	NA	NA	67081147	67069249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67071010_67076233_67076387_67077948_67078288_67080998
39852	chr13	+	2011	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	7	896	7	-3	multi-exon	FALSE	canonical	3	129	junction_1	0	286	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGAGGCCTGTTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	14804839	14812785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14804950_14810884
39854	chr2	+	2318	15	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-7	1	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	145.444936631829	2	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATTTTACTCATTTCTTA	NA	False	NA	NA	False	NA	NA	NA	174257636	174269296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257828_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
39855	chr1	-	4485	3	ISM	ENSMUSG00000058407.13	ENSMUST00000194747.2	2605	4	19	524	19	-277	5prime_fragment	FALSE	canonical	3	765	junction_2	75.5	4	113	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACCAAGAAACTCAAACGT	NA	False	NA	NA	False	NA	NA	NA	38036286	38027000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_38029539_38033072_38034923_38036189
39856	chr6	+	1728	13	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-9	-437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	308.719791594615	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAAGGAGGCTGCTGTCC	5428	False	NA	NA	False	NA	NA	NA	125108862	125121279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110489_125114089_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
39857	chr8	-	3443	18	ISM	ENSMUSG00000033703.10	ENSMUST00000041382.7	3838	24	7481	2	4522	-2	3prime_fragment	FALSE	canonical	3	101	junction_7	11.9852850956299	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTCAGAAAACTGTTTT	8724	False	NA	NA	False	NA	NA	NA	111621610	111609096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_111609719_111609859_111610084_111610472_111610573_111610662_111610851_111612924_111613045_111613174_111613319_111613682_111613905_111613986_111614154_111614299_111614511_111615550_111615922_111616307_111616373_111616807_111616979_111617099_111617202_111618688_111618802_111619920_111620093_111620270_111620391_111620897_111620979_111621360
39858	chr9	-	823	4	ISM	ENSMUSG00000037410.14	ENSMUST00000144348.8	655	5	118	-116	83	116	intron_retention	FALSE	canonical	3	61	junction_1	8.60232526704263	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTTCCTGTGCCCT	NA	False	NA	NA	False	NA	NA	NA	90152739	90110989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_90111155_90123062_90123232_90131843_90131998_90152404
39859	chr9	-	4394	9	NNC	ENSMUSG00000037410.14	novel	5956	13	NA	NA	29838	-42	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.2823283500655	23	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTACATTCTGCCTCAA	6674	False	NA	NA	False	NA	NA	NA	90108142	90084121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_90086446_90086500_90087276_90089825_90089948_90091720_90091907_90097530_90097649_90100712_90101208_90104359_90104554_90105491_90105603_90108073
39860	chr4	+	2648	4	NIC	ENSMUSG00000006392.17	novel	1145	7	NA	NA	207	-7	intron_retention	FALSE	canonical	3	653	junction_2	34.7083083233203	5	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTCAACCCTGCCATTC	NA	False	NA	NA	False	NA	NA	NA	118267751	118272299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118269690_118269860_118269943_118270823_118271073_118271920
39861	chr5	-	1964	6	NNC	ENSMUSG00000029500.17	novel	2098	6	NA	NA	3	-7	intron_retention	FALSE	non_canonical	0	0	junction_1	272.319958871912	8	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTTGTTTATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	110417717	110407027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110408268_110413381_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
39862	chr5	+	2867	19	NNC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	-114	-108	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_16	43.3148108561745	287	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAGTCCGTGAGTCCAA	NA	False	NA	NA	False	NA	NA	NA	137016117	137025394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137023056_137023144_137023786_137023913_137024959
39864	chr6	-	1405	3	Antisense	novelGene_ENSMUSG00000030016.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAACCAAAAAACCTAAA	NA	False	NA	NA	False	NA	NA	NA	83963723	83959954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83961055_83961756_83961876_83963537
39865	chr7	+	4601	20	FSM	ENSMUSG00000042105.19	ENSMUST00000043138.13	4734	20	-18	151	14	0	multi-exon	TRUE	canonical	3	45	junction_6	8.64088073894081	69	10	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAGCGTATGAGAATTTC	7158	False	NA	NA	False	NA	NA	NA	128213065	128297998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654_128271723_128277021_128277147_128278452_128278531_128279720_128279842_128281440_128281570_128283971_128284090_128286809_128287009_128292350_128292423_128293475_128293550_128293977_128294107_128295368_128295457_128295899
39868	chr5	-	465	1	FSM	ENSMUSG00000059244.7	ENSMUST00000196473.2	350	1	-143	28	-143	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTAAATAAATGGTTATA	NA	False	NA	NA	False	NA	NA	NA	25865296	25864831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_25864800_25865300
39869	chr10	-	1217	7	NIC	ENSMUSG00000019868.17	novel	1219	7	NA	NA	-2344	19	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	268.946504387438	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGGGTTGGAGATCCTGA	5218	False	NA	NA	False	NA	NA	NA	14562181	14531079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14562051
39870	chr11	+	3659	5	FSM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	-15	23	-15	-23	multi-exon	FALSE	canonical	3	20	junction_1	7.21110255092798	33	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGGGGTTACTGCCTC	913	False	NA	NA	False	NA	NA	NA	114742652	114763420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321_114759472_114761146
39871	chr5	-	2833	15	ISM	ENSMUSG00000028771.14	ENSMUST00000030556.8	3280	18	36601	0	-9704	0	3prime_fragment	FALSE	canonical	3	47	junction_13	12.2865448224254	107	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTGTATTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	21224308	21191642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210
39872	chr3	+	2140	11	Antisense	novelGene_ENSMUSG00000055436.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAAACCACATGTATGCC	NA	False	NA	NA	False	NA	NA	NA	157717263	157729501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157717841_157717946_157718086_157718416_157718534_157719588_157719679_157721958_157722090_157723445_157723524_157724943_157725077_157727012_157727063_157727596_157727690_157728477_157728587_157728878
39873	chr5	-	3863	6	FSM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	25	5	25	-5	multi-exon	FALSE	canonical	3	446	junction_2	42.6164287569946	1855	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAAGTCACTTTTGGTTAG	NA	False	NA	NA	False	NA	NA	NA	136227792	136206985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
39874	chr15	-	1743	8	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	371	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	733.085038361436	2	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83056422	83037697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038379_83038445_83038924_83043026_83043121_83045083_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
39876	chr5	-	2213	11	NNC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-7	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	184.953534705342	1	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTAATTCTGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	92582957	92563407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92572086_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
39877	chr1	-	2185	14	FSM	ENSMUSG00000026209.16	ENSMUST00000185419.7	2833	14	1	647	1	-22	multi-exon	FALSE	canonical	3	252	junction_13	192.021017094268	21	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAGTAGATTTTCACTC	NA	False	NA	NA	False	NA	NA	NA	75293636	75285230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
39878	chr6	-	5072	1	Antisense	novelGene_ENSMUSG00000013736.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCCGGGCCGCACGCG	NA	False	NA	NA	False	NA	NA	NA	106751219	106746147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_106746100_106751200
39881	chr7	-	1460	10	NNC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	-2	223	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	374.425485837228	140	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGACTTGAGATAAGATG	NA	False	NA	NA	False	NA	NA	NA	46569687	46539110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563170_46563211_46569568
39882	chr4	+	3276	2	ISM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	145	8	145	-8	intron_retention	FALSE	canonical	3	4700	junction_1	0	15	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACCCAGTTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	130202532	130209248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_130202644_130206083
39883	chr14	-	3168	24	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	248	-27	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	471.061837977232	1	193	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	52434625	52397897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52398337_52401941_52402009_52408283_52408454_52408878_52408959_52409494_52409608_52409908_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414185_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420486_52420640_52421384_52421478_52434541
39884	chr15	-	1143	8	ISM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	9728	3	517	-3	3prime_fragment	FALSE	canonical	3	5838	junction_6	322.899112316361	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGATGGTTATGCTTTTA	9647	False	NA	NA	False	NA	NA	NA	36599489	36595907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448
39888	chr5	+	2603	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	42	-1029	42	1028	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	453	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCGTCAGTGTTTGCAGT	NA	False	NA	NA	False	NA	NA	NA	48529712	48547216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
39889	chr19	-	2207	10	ISM	ENSMUSG00000024826.16	ENSMUST00000136983.8	3314	11	5827	859	15	12	3prime_fragment	FALSE	canonical	3	642	junction_2	69.8630052758457	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTGTCTCTTGACTCCT	7099	False	NA	NA	False	NA	NA	NA	5957072	5947402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028
39890	chr14	+	2011	6	NNC	ENSMUSG00000079271.5	novel	1761	5	NA	NA	-37823	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.47112743381895	169	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAATTTAAAAGCTCTAGA	NA	False	NA	NA	False	NA	NA	NA	41709082	41754996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41709388_41744357_41744461_41747789_41747953_41748897_41749030_41749709_41749892_41753870
39891	chr7	+	1657	4	NIC	ENSMUSG00000006333.15	novel	751	5	NA	NA	2	-4	intron_retention	FALSE	canonical	3	8457	junction_1	2935.87719240586	24	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTTTATTGGTGTGC	1315	False	NA	NA	False	NA	NA	NA	3707042	3709889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3707448_3707644_3708919_3709649
39892	chr17	-	2159	6	NNC	ENSMUSG00000023971.10	novel	537	6	NA	NA	-14	0	intron_retention	FALSE	non_canonical	0	0	junction_1	222.773786608748	6	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTGCATCAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	46985227	46977249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46978168_46978366_46979013_46980830_46981112_46983450_46983518_46983631_46983774_46985122
39893	chr9	-	2958	12	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	3419	-5	intron_retention	FALSE	non_canonical	0	0	junction_5	66.4308501468984	3	37	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAACCTGTGTGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	21725792	21711480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714422_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764
39895	chr10	+	1912	5	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	5324	1271	5324	-1271	internal_fragment	FALSE	canonical	3	69	junction_2	5.93717104351896	1642	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAACACCCAAACACTAA	1214	False	NA	NA	False	NA	NA	NA	79862900	79866025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806
39896	chr8	+	2831	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	85	0	24	0	multi-exon	FALSE	canonical	3	239	junction_9	14.7126551724093	1	85	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	105951861	105979685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
39897	chr2	-	1208	5	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-3	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	594.803538994179	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAAAGCAATTCATAGTG	NA	False	NA	NA	False	NA	NA	NA	25114669	25112195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25112557_25112877_25113381_25113945_25114057_25114135_25114245_25114545
39899	chr11	-	2381	7	Antisense	novelGene_ENSMUSG00000020897.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1047	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTAGGTCCATTGGCTGA	5067	False	NA	NA	False	NA	NA	NA	68942490	68936467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_68936834_68938609_68938712_68938795_68938868_68938999_68939192_68939331_68939469_68939554_68939701_68941124
39901	chrX	+	1055	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	198	-43	198	43	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATATTTCTACTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13069007	13070062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13069000_13070100
39902	chr7	+	2287	7	NIC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	85	0	intron_retention	FALSE	canonical	3	3512	junction_1	348.470307997045	40	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	12762136	12764962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12762706_12762807_12762915_12763014_12763523_12763602_12764134_12764215_12764303_12764381_12764520_12764615
39903	chr7	-	2167	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	119	4	119	-4	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	1502	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTCTGGACTCTTCCG	NA	False	NA	NA	False	NA	NA	NA	16657920	16649307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
39904	chr8	-	4478	4	NNC	ENSMUSG00000031665.8	novel	5265	4	NA	NA	372	-760	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	121.663470277647	1	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTCTGTATATAAATG	NA	False	NA	NA	False	NA	NA	NA	89770418	89754622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_89755447_89756571_89760027_89768979_89769073_89770312
39905	chr9	+	1422	9	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.514274957871	72	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGACTCTGAGTGGC	636	False	NA	NA	False	NA	NA	NA	45281750	45307448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306826_45306915
39907	chr6	-	671	4	NIC	ENSMUSG00000030042.16	novel	457	4	NA	NA	29	179	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	385.203842140755	262	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAATAATTATTTAAGAT	NA	False	NA	NA	False	NA	NA	NA	82629822	82595793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_82596120_82628417_82628460_82629063_82629149_82629604
39908	chr1	+	3278	6	ISM	ENSMUSG00000026429.10	ENSMUST00000027687.8	1116	7	2767	11	2714	-8	3prime_fragment	FALSE	canonical	3	687	junction_5	56.6568618968612	5	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATGTTAAGTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	134893069	134901889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
39909	chr7	-	2788	2	FSM	ENSMUSG00000054381.6	ENSMUST00000206942.2	750	2	7	-2045	4	5	multi-exon	FALSE	canonical	3	30	junction_1	0	36	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTCTGCTCCTCATTTG	956	False	NA	NA	False	NA	NA	NA	126975181	126971703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126973871_126974560
39911	chr3	+	4543	7	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	0	-239	intron_retention	FALSE	canonical	3	940	junction_3	45.8609008003792	4	117	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAACCCTGGACCTGACA	NA	False	NA	NA	False	NA	NA	NA	105866823	105874604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105871829_105871938_105871994_105872396_105873742_105874478
39912	chr7	+	1481	3	FSM	ENSMUSG00000025487.16	ENSMUST00000125668.2	719	3	41	-803	41	0	multi-exon	FALSE	canonical	3	1065	junction_2	71	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGCTTCTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	140470342	140478556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140470534_140474393_140474457_140477329
39915	chr2	+	1319	11	NNC	ENSMUSG00000027374.13	novel	3228	11	NA	NA	-2	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	559.395781178228	1	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCACATGGTATATAGC	4162	False	NA	NA	False	NA	NA	NA	127429336	127445902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437771_127440081_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444454_127445622
39916	chr15	+	1667	11	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	163	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	512.457110400471	10	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGGGACCCTTGATTGG	NA	False	NA	NA	False	NA	NA	NA	85220608	85347412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275952_85277605_85277741_85346491_85346669_85347121
39917	chr7	-	289	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	9	1044	9	-1044	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCAGCTCAGGTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	116425077	116424788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_116424800_116425100
39918	chr2	-	3079	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	143	-1149	0	-149	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	1	144	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTATTTTCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	125700916	125672372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
39919	chr3	-	1296	9	NNC	ENSMUSG00000027679.14	novel	2499	6	NA	NA	10856	6782	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGCGTTCCTATCGCC	NA	False	NA	NA	False	NA	NA	NA	34123473	34103386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_34103471_34104221_34104302_34108369_34108479_34110476_34110564_34112170_34112230_34112314_34112385_34115980_34116180_34118266_34118465_34123063
39920	chr15	-	3568	9	ISM	ENSMUSG00000022614.9	ENSMUST00000231107.2	3049	10	-390	0	37	0	intron_retention	FALSE	canonical	3	214	junction_2	18.0190871022924	2	129	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	89239740	89235345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285
39922	chr6	-	2316	15	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	325	-30	combination_of_known_splicesites	FALSE	canonical	3	10	junction_13	87.0551373485535	2	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGCCAAATAAAACTATT	NA	False	NA	NA	False	NA	NA	NA	146478953	146451168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146477722_146477959_146478798
39923	chr9	-	3938	17	NNC	ENSMUSG00000032498.10	novel	2394	17	NA	NA	0	-17	intron_retention	FALSE	non_canonical	0	0	junction_1	95.3878390768446	12	111	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCACGTGTATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	111100602	111057339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_111059356_111059964_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
39924	chr3	-	2998	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	152	0	50	0	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	115	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	63872037	63849750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
39925	chr4	+	1521	10	FSM	ENSMUSG00000028601.19	ENSMUST00000052999.13	1307	10	-214	0	-214	0	multi-exon	TRUE	canonical	3	713	junction_3	43.9463758530471	3580	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	NA	False	NA	NA	NA	108022419	108036505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
39927	chr8	-	2016	14	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	14	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1257.88189584926	1	70	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTACTTGGCTTCACTGGA	NA	False	NA	NA	False	NA	NA	NA	26337708	26306902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329766_26329917_26330039_26330104_26337606
39928	chr1	+	1870	10	Fusion	ENSMUSG00000026096.15_ENSMUSG00000100679.2	novel	1067	5	NA	NA	-8	-6	multi-exon	FALSE	canonical	2	9	junction_3	51.218486246016	62	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTCAAGAATCATTTCGT	NA	False	NA	NA	False	NA	NA	NA	53336261	53365320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_53336348_53338130_53338312_53344613_53344766_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
39930	chr17	-	1640	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-1	0	intron_retention	FALSE	canonical	3	306	junction_7	21.6127534365964	1023	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	24382741	24374806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
39932	chr11	-	3016	6	NNC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	-8	-9	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	255.016391630028	370	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTAGTCTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	54678480	54608290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647254_54647386_54678385
39933	chr7	-	1999	9	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-64	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	705.305563213562	1	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8801	False	NA	NA	False	NA	NA	NA	141941658	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937273_141939195_141939356_141941473
39934	chr15	-	1822	8	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	23	2	intron_retention	FALSE	non_canonical	0	0	junction_2	323.560863908263	41	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTCTCCTGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	83006979	83000046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83001173_83001749_83001799_83001903_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
39935	chr2	+	1113	10	NNC	ENSMUSG00000027132.4	novel	2886	10	NA	NA	11	-1726	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	163.99488098003	8	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAATTTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	112209581	112242859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240568_112242734
39937	chr17	-	3056	10	NNC	ENSMUSG00000024142.16	novel	3358	9	NA	NA	-1	-2	intron_retention	TRUE	non_canonical	0	0	junction_1	25.399037602065	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCAGTGTGAGGCCGATT	9617	False	NA	NA	False	NA	NA	NA	24698022	24692530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24693061_24693328_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697453_24697985
39938	chr5	+	2082	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	30	0	-6	0	multi-exon	FALSE	canonical	3	290	junction_9	37.917389085507	490	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGCACGATTGAGACC	7797	False	NA	NA	False	NA	NA	NA	129802156	129835391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
39939	chr15	+	1453	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	17	10	6	-10	multi-exon	FALSE	canonical	3	485	junction_2	12.1620995994387	1702	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAGAAACCACCCTAGG	5944	False	NA	NA	False	NA	NA	NA	102240160	102246564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
39940	chr6	+	3243	6	FSM	ENSMUSG00000015053.15	ENSMUST00000015197.9	3571	6	330	-2	330	0	multi-exon	FALSE	canonical	3	138	junction_4	9.31665175908169	120	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGCCTGTTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	88175645	88184014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88175864_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
39941	chr5	+	2840	16	NNC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-6	922	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	278.03951757499	14	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGACTTGGAGTAATAAGA	NA	False	NA	NA	False	NA	NA	NA	74696157	74757728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733254_74747663_74747719_74752395_74752522_74755734_74755873_74756499
39942	chr3	-	1094	6	NNC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-469	1437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTACCCAGCATATGAGAGG	4789	False	NA	NA	False	NA	NA	NA	89090069	89086624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89086744_89087556_89087688_89088035_89088195_89088480_89088582_89089230_89089350_89089604
39943	chrX	+	1303	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-68	-25	68	mono-exon	FALSE	NA	NA	NA	NA	NA	3	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
39944	chr17	-	2991	4	Antisense	novelGene_ENSMUSG00000053390.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	80	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGCAAGTGAGGAACCCT	NA	False	NA	NA	False	NA	NA	NA	33224417	33212115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_33212232_33220596_33220722_33220928_33220991_33221729
39945	chr8	-	2565	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-3	849	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1788.73909655812	1	93	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTCATTTTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	43759976	43747250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749555_43753664_43753743_43757512_43757597_43759877
39947	chr9	-	1971	3	NNC	ENSMUSG00000032346.8	novel	2138	3	NA	NA	143	31	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	1038	35	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAAGGGTGGTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	78285864	78283359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78284974_78285256_78285440_78285690
39948	chr7	-	2164	18	NIC	ENSMUSG00000078762.11	novel	2070	19	NA	NA	1	-20	intron_retention	FALSE	canonical	1	1	junction_3	59.3865409472108	1	57	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTCAATAAAGCATTTCAA	NA	False	NA	NA	False	NA	NA	NA	30364384	30353160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30353481_30353594_30353728_30356373_30356443_30356586_30356699_30357023_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
39949	chr11	-	2672	12	Antisense	novelGene_ENSMUSG00000061981.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGCCCGCCTGCGCCCC	2447	False	NA	NA	False	NA	NA	NA	77951250	77928789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_77928934_77940298_77940386_77944186_77944277_77945607_77945700_77946580_77946703_77948082_77948205_77948311_77948427_77948526_77948646_77948723_77948941_77949332_77949515_77949768_77949919_77950018
39950	chrX	+	1726	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	94	5	31	-5	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	1	86	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105230799	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
39951	chr18	-	2229	14	NIC	ENSMUSG00000024454.17	novel	2032	15	NA	NA	-3	-13	intron_retention	FALSE	canonical	3	500	junction_2	39.0381394454314	703	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTCACTCAGTACTTTAT	NA	False	NA	NA	False	NA	NA	NA	38088030	38070037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_38070737_38074005_38074164_38074431_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
39952	chr9	+	1769	10	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	2	-1	intron_retention	FALSE	canonical	3	766	junction_8	68.7216608258755	928	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799564	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
39953	chr3	+	5663	11	NIC	ENSMUSG00000027763.14	novel	5151	9	NA	NA	158	-20	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	39.6162845304806	28	96	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGAAATTGCCCTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	60435706	60537132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_60435945_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60528843_60528880_60529566_60529662_60532544_60532620_60533800
39955	chr4	-	2434	8	FSM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	20	236	20	-236	multi-exon	FALSE	canonical	3	50	junction_4	11.6233403467474	129	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCTAGTAAAAATGTTAT	-2	True	NA	NA	False	NA	NA	NA	3574833	3549276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
39956	chr16	+	3538	3	NNC	ENSMUSG00000044117.13	novel	493	4	NA	NA	-3198	-108758	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGATGCTTGAGGGCGCAG	NA	False	NA	NA	False	NA	NA	NA	13801269	13805093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13801854_13802049_13803477_13803566
39957	chr15	+	1136	4	ISM	ENSMUSG00000022587.15	ENSMUST00000185863.7	617	6	2142	-733	828	-5	3prime_fragment	FALSE	canonical	2	42	junction_1	257.454634623051	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCCTGCTATGTCCTG	NA	False	NA	NA	False	NA	NA	NA	74829231	74831175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_74829313_74829625_74829727_74830117_74830238_74830341
39958	chr15	-	2039	18	NNC	ENSMUSG00000039828.8	novel	2126	18	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_14	101.173084758669	12	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGTCCTTTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	8128675	7902537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108757_8111945_8112067_8123159_8123244_8128439_8128506_8128602
39959	chr8	+	1165	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	122	0	-10	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	5321	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	NA	False	NA	NA	NA	86026541	86034700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
39960	chr11	-	2945	14	FSM	ENSMUSG00000017405.15	ENSMUST00000152611.8	2882	14	-64	1	0	-1	multi-exon	FALSE	canonical	3	30	junction_7	9.26148734971841	106	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGGCTTATGATCTCT	6248	False	NA	NA	False	NA	NA	NA	78067501	78056932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
39961	chrX	-	2589	11	NNC	ENSMUSG00000031232.18	novel	4115	11	NA	NA	14817	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	103.757409373982	1	129	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105040569	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012798_105014044_105014633_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040440
39962	chr2	+	4162	10	NIC	ENSMUSG00000027075.17	novel	3927	13	NA	NA	-2	-3202	intron_retention	FALSE	canonical	3	43	junction_1	14.575474072717	3	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTACCTCCCCAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	84669758	84689530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84685994_84687100_84687248_84687404_84687441_84687627
39964	chr2	+	4451	18	FSM	ENSMUSG00000050199.14	ENSMUST00000046548.14	5060	18	609	0	609	0	multi-exon	FALSE	canonical	3	53	junction_13	11.7799900717261	92	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTGAAAACTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	109748600	109844602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_109748651_109801036_109801109_109820049_109820122_109821448_109821521_109826898_109827115_109827937_109828010_109829750_109829820_109830640_109830713_109830904_109830977_109831274_109831344_109832810_109832883_109833798_109833865_109834895_109834968_109836848_109836921_109837489_109837616_109838429_109838546_109838926_109839011_109841595
39968	chr11	-	3788	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	0	-11	intron_retention	FALSE	non_canonical	0	0	junction_4	212.659061747225	1	224	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGACACAAAACTACTACATT	977	False	NA	NA	False	NA	NA	NA	79145495	79130224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79134392_79135276_79135390_79136995_79137128_79139216_79139481_79141806_79141976_79145178_79145211_79145285
39969	chr6	+	2522	14	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	7	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	348.855610083012	1	138	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATATTACCACTCCTAG	5444	False	NA	NA	False	NA	NA	NA	125108878	125121697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110534_125111454_125111695_125113875_125113932_125114017_125114179_125114273_125114543_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
39971	chr16	-	1012	1	FSM	ENSMUSG00000084838.4	ENSMUST00000117664.2	286	1	-117	-609	-117	609	mono-exon	FALSE	NA	NA	NA	NA	NA	5	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGATAATGCTTG	NA	False	NA	NA	False	NA	NA	NA	19995879	19994867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_19994900_19995900
39972	chr7	+	1990	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	17	32	17	-32	multi-exon	FALSE	canonical	3	93	junction_8	19.8289560996034	288	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATAGCAAAGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	97020829	97041360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
39973	chr17	+	3198	9	ISM	ENSMUSG00000024182.18	ENSMUST00020183805.1	2890	10	3784	-516	116	-1	3prime_fragment	FALSE	canonical	3	227	junction_7	45.5382737375935	163	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGATATGTGATATACTA	1316	False	NA	NA	False	NA	NA	NA	26361707	26414784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26362551_26392613_26392755_26401463_26401561_26403150_26403289_26406677_26407196_26407547_26407719_26408959_26409206_26412912_26413081_26413908
39975	chr4	-	1369	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-268	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	902.658742579695	1	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGGAGCTATGACCCTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093474_41093515_41093703_41093781_41094000_41094265_41094328_41094729_41094839_41095144_41095272_41098001
39976	chr4	-	2534	4	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	10658	3	-1154	-3	intron_retention	FALSE	canonical	3	9851	junction_2	447.097304845377	4	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTAGTTTTGTCATA	NA	False	NA	NA	False	NA	NA	NA	119141143	119135180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342
39977	chr7	+	4881	15	NNC	ENSMUSG00000033904.17	novel	5073	16	NA	NA	100	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	27.6995542585517	1	190	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTGGATCTCTTTTAG	NA	False	NA	NA	False	NA	NA	NA	118311874	118336247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118311972_118313328_118313472_118314582_118314738_118317189_118317319_118320616_118322262_118323677_118323809_118324525_118324683_118325225_118325366_118325722_118325834_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616_118331677_118334490
39978	chr4	-	2324	9	Fusion	ENSMUSG00000028885.9_ENSMUSG00000037752.5	novel	4245	3	NA	NA	27	877	multi-exon	FALSE	canonical	1	2	junction_2	28.950118738962	4	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACCCCATCCCATCCATT	NA	False	NA	NA	False	NA	NA	NA	132484536	132454939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_132455882_132458186_132458384_132465329_132465464_132465547_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
39979	chr1	-	636	5	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1382	0	-432	0	3prime_fragment	FALSE	canonical	3	5309	junction_1	708.503484465673	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16173504	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391
39980	chr12	+	2184	15	NNC	ENSMUSG00000112449.2	novel	3646	16	NA	NA	-50	-1233	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	372.921812946667	2	78	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2570	False	NA	NA	False	NA	NA	NA	55202104	55235125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55202366_55211014_55211209_55213093_55213173_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227111_55227461_55227571_55230346_55230518_55232930_55233027_55234644
39981	chr6	+	2161	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	43	-626	6	5	multi-exon	FALSE	canonical	3	57	junction_3	10	243	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGCCTGTAACCCAAGC	NA	False	NA	NA	False	NA	NA	NA	134391433	134415704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
39982	chr11	-	1753	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	14	4	-12	0	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	62	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	230	False	NA	NA	False	NA	NA	NA	61652900	61620479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
39983	chrX	-	3108	15	FSM	ENSMUSG00000031109.17	ENSMUST00000114912.8	3167	15	2	57	2	-57	multi-exon	FALSE	canonical	2	12	junction_13	14.647560220329	132	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGACTGGGCTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	48377117	48099391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_48100512_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
39984	chr5	-	482	2	NIC	ENSMUSG00000049606.17	novel	1484	3	NA	NA	15	-146	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	0	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCTAGCACCATCATAGA	NA	False	NA	NA	False	NA	NA	NA	106844017	106838615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_106838744_106843663
39985	chr5	-	3386	4	NIC	ENSMUSG00000049606.17	novel	5785	6	NA	NA	13044	1593	intron_retention	FALSE	canonical	2	8	junction_3	38.4447655734822	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGACCGTTTGTAGCTC	NA	False	NA	NA	False	NA	NA	NA	106829845	106783079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_106783303_106783475_106786502_106814650_106814712_106829769
39986	chr4	+	1794	13	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	4137	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	237.671736154442	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGAGAACAATGGGTTTG	7112	False	NA	NA	False	NA	NA	NA	152034925	152065670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152034933_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
39987	chr8	-	2184	8	NNC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_7	30.9258494348224	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAACAAATAAATAAGTGA	4666	False	NA	NA	False	NA	NA	NA	70687118	70672854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686807
39988	chr5	-	2103	16	NIC	ENSMUSG00000003623.5	novel	2996	18	NA	NA	-140	-2653	intron_retention	FALSE	canonical	3	171	junction_7	19.5441380811059	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGATATGGATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	9047182	9018685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
39990	chrX	-	2286	12	FSM	ENSMUSG00000031358.18	ENSMUST00000112137.2	2316	12	26	4	26	1	multi-exon	FALSE	canonical	3	28	junction_9	6.17646827325928	141	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAAGCAAGAGGAGTTT	NA	False	NA	NA	False	NA	NA	NA	167456868	167437116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
39991	chr8	-	2510	4	FSM	ENSMUSG00000031796.8	ENSMUST00000213086.2	2544	4	32	2	-16	-2	multi-exon	FALSE	canonical	3	502	junction_2	10.6562449087639	29	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTTATCTTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	96161440	96146881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96148875_96149410_96149523_96151244_96151325_96161115
39992	chr18	-	1242	1	FSM	ENSMUSG00000044982.8	ENSMUST00000054984.8	2727	1	2530	-1045	2530	1045	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACAGGGTTTCTCCGT	NA	False	NA	NA	False	NA	NA	NA	32042347	32041105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_32041100_32042300
39993	chr19	-	1388	6	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	8	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	343.113159176386	2	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAAATGGAGTTTGTGA	8445	False	NA	NA	False	NA	NA	NA	43512916	43488198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488997_43491346_43491378_43495760_43495874_43496308_43496433_43504119_43504302_43512776
39994	chr15	-	2183	4	NNC	ENSMUSG00000062397.9	novel	4417	4	NA	NA	-2404	1614	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3122.70683862575	5	76	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTAAAACGAAACTAGTCT	NA	False	NA	NA	False	NA	NA	NA	37010421	36999257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_37001168_37002082_37002191_37003929_37004067_37010393
39995	chr19	+	2655	9	NIC	ENSMUSG00000010110.18	novel	2251	11	NA	NA	-22	-6	intron_retention	FALSE	canonical	3	140	junction_1	20.1121853611188	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCACTAGTGTTGATGTC	6584	False	NA	NA	False	NA	NA	NA	8718811	8733000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8727137_8727269_8727392_8732272
39996	chr9	-	1449	12	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	4116	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2075.65946903748	2	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGATTGTGTGGCCGT	NA	False	NA	NA	False	NA	NA	NA	89992226	89973725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974232_89974360_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178
39997	chr4	+	1029	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	0	-87	0	87	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	339	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCAGCCTATTTCTAACT	NA	False	NA	NA	False	NA	NA	NA	83335967	83360410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
39999	chrX	+	3663	23	NIC	ENSMUSG00000031153.17	novel	3156	25	NA	NA	1	-8	intron_retention	FALSE	canonical	0	0	junction_3	17.306486148549	3	90	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCACTGACTGTCTGGT	3261	False	NA	NA	False	NA	NA	NA	7656234	7686794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7656308_7658308_7658376_7658514_7658577_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7685561_7686240
40000	chr3	-	2074	7	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	643.854473723165	902	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	90416774	90406262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_90407415_90409422_90409561_90410402_90410590_90412701_90412786_90413414_90413569_90414851_90414934_90416497
40001	chr17	-	2564	11	FSM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	18	-23	2	0	multi-exon	FALSE	canonical	3	131	junction_7	88.074059745194	235	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAATCCCCTTTTTGCT	5837	False	NA	NA	False	NA	NA	NA	46593921	46568776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
40003	chr10	+	2358	4	NIC	ENSMUSG00000020153.15	novel	758	8	NA	NA	-239	0	intron_retention	FALSE	canonical	3	2162	junction_3	117.405280971513	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTGTGTTCTGTGTGGA	NA	False	NA	NA	False	NA	NA	NA	80088909	80092626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80088992_80089493_80090854_80090923_80090971_80091757
40004	chr13	+	2602	22	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	32	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.495836044228	1	110	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTGAATCCTTTATT	NA	False	NA	NA	False	NA	NA	NA	18901491	19050970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901499_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
40005	chr11	-	1407	4	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGGGAGGGAAAACATCCAA	NA	False	NA	NA	False	NA	NA	NA	75656399	75646398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75646506_75647640_75647847_75650114_75650253_75655443
40006	chr15	+	3891	6	FSM	ENSMUSG00000022455.5	ENSMUST00000023089.5	1413	6	20	-2498	20	2498	multi-exon	FALSE	canonical	3	14	junction_3	3.32264954516723	69	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGCATGGTCAGTAATTTC	2020	False	NA	NA	False	NA	NA	NA	82183174	82201322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82183270_82189871_82189981_82190244_82190387_82190546_82190640_82192723_82192829_82197975
40008	chr2	+	1305	11	NIC	ENSMUSG00000061186.16	novel	659	7	NA	NA	1	22342	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	23.4222116803687	1	36	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGTGAAAATATGTGGGG	2765	False	NA	NA	False	NA	NA	NA	10375322	10466290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_10375364_10384995_10385047_10385833_10385878_10398075_10398218_10406799_10406895_10409248_10409490_10442757_10442847_10444677_10444925_10450495_10450594_10461715_10461818_10466135
40009	chr13	-	908	2	ISM	ENSMUSG00000021621.16	ENSMUST00000178084.2	931	4	-35	6511	9	-4855	5prime_fragment	FALSE	canonical	3	139	junction_1	0	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGTTATTATGTATAAA	NA	False	NA	NA	False	NA	NA	NA	91955815	91953458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_91954280_91955728
40010	chr14	-	2381	1	NIC	ENSMUSG00000021905.15	novel	1057	4	NA	NA	26	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTCAATCCTGAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	31807217	31804836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_31804800_31807200
40011	chr11	-	3041	6	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	8786	11860	8786	-9518	internal_fragment	FALSE	canonical	3	46	junction_1	16.5963851485798	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTGTATTGGACAACAT	NA	False	NA	NA	False	NA	NA	NA	103294727	103266960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_103268340_103270859_103271179_103277783_103278175_103285513_103286141_103287852_103288101_103294650
40012	chr8	+	2016	4	NNC	ENSMUSG00000005483.11	novel	2996	3	NA	NA	125	-750	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	288.777884656472	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGCAGTCCTTCGACTC	NA	False	NA	NA	False	NA	NA	NA	84334946	84338532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84335010_84335114_84335172_84336442_84337024_84337217
40013	chr1	-	1806	13	FSM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	-6	-4	-6	4	multi-exon	FALSE	canonical	3	45	junction_9	59.1577458063514	816	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTATAGCTTGGTGTACG	NA	False	NA	NA	False	NA	NA	NA	58463231	58451154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
40014	chr5	-	2146	11	NNC	ENSMUSG00000029147.12	novel	2307	10	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	195.303993814771	450	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	NA	False	NA	NA	NA	31377940	31360011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646_31377815_31377884
40015	chrX	-	4777	23	NIC	ENSMUSG00000031099.17	novel	4798	23	NA	NA	0	-6	intron_retention	FALSE	canonical	2	9	junction_16	5.32517023357272	28	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGACTTTCTCACTTCTT	NA	False	NA	NA	False	NA	NA	NA	46981429	46898515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_46900146_46912241_46912455_46912566_46912686_46915369_46915503_46917735_46917859_46930413_46930528_46930785_46930897_46938792_46938913_46940521_46940671_46941471_46941605_46943442_46943596_46947132_46947255_46949297_46949525_46950155_46950266_46963031_46963101_46964040_46964173_46965261_46965418_46968322_46968503_46972224_46972326_46972452_46972554_46972913_46973081_46975988_46976076_46981102
40016	chrX	+	1696	5	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-1793	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	1174.51724125276	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74147761	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74148067_74149883_74149988_74150777_74150857_74151784_74151911_74152301
40017	chr12	+	2107	10	NNC	ENSMUSG00000021007.15	novel	1913	11	NA	NA	4580	7	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	28.5427987069364	10	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTATTGCTCTCATA	NA	False	NA	NA	False	NA	NA	NA	98603848	98636081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_98603873_98612278_98612700_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
40019	chr11	+	2363	14	NIC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	3	-7	intron_retention	FALSE	canonical	3	887	junction_2	60.0937137966179	16	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTCTCAAAGCTGAGTT	NA	False	NA	NA	False	NA	NA	NA	120564202	120600261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120600073_120600169
40022	chr14	-	2531	7	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-3632	-794	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	111.450661729754	1	51	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACAGGAATGCTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	58084395	58070953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58073012_58075047_58075125_58076546_58076663_58077007_58077053_58078285_58078376_58080644_58080772_58084377
40024	chr6	+	2305	12	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-34	685	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	146.870663290996	1	56	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGCTCTGAGTGGATT	5692	False	NA	NA	False	NA	NA	NA	83254340	83281143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273682_83274188_83274366_83276407_83276493_83277452_83277521_83280307
40025	chr4	-	876	9	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	31	262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	660.281900024527	12	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGGACCCTGACAAACG	8861	False	NA	NA	False	NA	NA	NA	129436453	129411613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129411621_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
40026	chr11	+	2445	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	91	5	91	-5	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	396	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATACTGTCTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	5905783	5917775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
40027	chr2	-	1872	11	NNC	ENSMUSG00000017707.10	novel	3683	10	NA	NA	34	-1399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.952253886333	64	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTAGTTTCTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	163487011	163466590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163466804_163467175_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
40028	chr3	-	2505	5	Antisense	novelGene_ENSMUSG00000007379.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGATGTAGGTGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	103077030	103065033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_103065140_103070270_103070411_103072321_103072559_103073726_103073805_103075086
40030	chr2	+	1603	12	NNC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	-2	-450	intron_retention	FALSE	non_canonical	0	0	junction_10	396.866195158399	1	36	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATAGCTTCCAACTGGG	NA	False	NA	NA	False	NA	NA	NA	164675947	164681489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677157_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679311_164680569_164680870_164681070
40031	chr2	-	1800	8	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-7	598	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	103.469407881494	1038	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCCTTCAATCAGTTAG	6153	False	NA	NA	False	NA	NA	NA	181007120	181000294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005989_181006103_181006192_181006397_181006505_181007011
40032	chr2	+	210	1	NIC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	3724	99	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAATCCATCATCCCA	NA	False	NA	NA	False	NA	NA	NA	145757543	145757753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_145757500_145757800
40033	chr9	+	2973	2	NNC	ENSMUSG00000032249.15	novel	629	4	NA	NA	16	-838	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGCCTAGGCTTGGCT	NA	False	NA	NA	False	NA	NA	NA	62280736	62283751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_62282468_62282509
40036	chr9	-	1864	6	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-22	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1840.40045642246	1	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAAATGGGAACTCTGAA	NA	False	NA	NA	False	NA	NA	NA	110775184	110768695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772328_110773265_110773312_110774891
40037	chr14	-	1729	6	NNC	ENSMUSG00000022108.9	novel	1796	6	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	317.900235923159	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATCAGATTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	73622729	73599675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_73600584_73601981_73602133_73603191_73603282_73603796_73603968_73605738_73605868_73622449
40040	chr1	+	3375	6	FSM	ENSMUSG00000040918.13	ENSMUST00000044021.12	3571	6	169	27	-38	-11	multi-exon	FALSE	canonical	3	256	junction_3	19.417517864032	128	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGTAAATTTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	164076783	164092927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_164077026_164084315_164084919_164088360_164088587_164089615_164089809_164090188_164090331_164090958
40041	chr9	-	2489	10	ISM	ENSMUSG00000032423.13	ENSMUST00000172828.8	1925	11	-40	1543	7	97	5prime_fragment	FALSE	canonical	0	0	junction_6	372.094671346479	2	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTGTGGAATATGTCT	NA	False	NA	NA	False	NA	NA	NA	88364242	88337533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359152_88359241_88361623_88361732_88361846_88361966_88364108
40042	chr10	-	1526	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	4	-5	4	-1	multi-exon	TRUE	canonical	3	252	junction_3	35.482102415679	761	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTGCTTTATTTTTAAT	7493	False	NA	NA	False	NA	NA	NA	7656651	7643714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
40044	chr4	+	3985	7	FSM	ENSMUSG00000062157.7	ENSMUST00000074408.7	4182	7	196	1	196	-1	multi-exon	TRUE	canonical	3	21	junction_5	3.02305952453618	47	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAATGTGCACGCAGTTG	NA	False	NA	NA	False	NA	NA	NA	135413793	135435491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135413911_135417832_135417957_135426100_135426283_135428538_135428682_135431020_135431181_135431479_135431611_135432363
40047	chr4	+	2496	13	ISM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	6386	10	6359	-10	3prime_fragment	FALSE	canonical	3	17	junction_1	44.6623132206811	270	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTCTGCCTGTGGCAG	NA	False	NA	NA	False	NA	NA	NA	115702815	115736437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
40048	chr17	+	2626	3	FSM	ENSMUSG00000034345.15	ENSMUST00000100955.3	879	3	-19	-1728	-19	343	multi-exon	FALSE	canonical	2	11	junction_1	535	34	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAAGGGGTCCTCCCTC	1815	False	NA	NA	False	NA	NA	NA	6130185	6137135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_6130350_6131076_6131150_6134746
40049	chr10	-	1538	6	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	183	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	312.210441849724	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTAGAGGTGTAATG	NA	False	NA	NA	False	NA	NA	NA	5755417	5749175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5751966_5752168_5752533_5755258
40050	chr2	+	1319	11	ISM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	7507	7	7507	-7	3prime_fragment	FALSE	canonical	3	183	junction_1	24.682179806492	4	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAAGTCTGAAGTACAT	3860	False	NA	NA	False	NA	NA	NA	127274625	127278005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
40051	chr8	-	1811	19	NNC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	181.135683404649	1370	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3351	False	NA	NA	False	NA	NA	NA	105261251	105237659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254126_105256679_105256749_105257024_105257129_105261143
40054	chr3	-	2256	4	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	14360	-168	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	273.40364949202	1	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTCTAAAATTGTGT	NA	False	NA	NA	False	NA	NA	NA	104735917	104730262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104731522_104731581_104732441_104732722_104732786_104735842
40055	chr15	-	3113	17	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-10	-72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	10.2116278697375	1	150	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGAATTTCTGTTTTCTA	6984	False	NA	NA	False	NA	NA	NA	98560785	98543086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547604_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556118_98556317_98560703
40056	chr18	+	2317	9	NIC	ENSMUSG00000036880.11	novel	1516	10	NA	NA	-247	-3	intron_retention	FALSE	canonical	3	191	junction_7	16.7779617355625	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTAACCTTTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	74912020	74939276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74932246_74934367_74934439_74937071_74937227_74938925
40057	chr1	-	2327	12	NIC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	87	-6	combination_of_known_splicesites	FALSE	canonical	2	5	junction_5	312.217078540286	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTATGCTTTGTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	177623980	177590747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
40058	chr19	-	2517	15	ISM	ENSMUSG00000024941.10	ENSMUST00000235599.2	2719	16	546	12	92	-9	3prime_fragment	FALSE	canonical	3	227	junction_11	20.5073406469041	8	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCACATCCTGGGTCCC	8893	False	NA	NA	False	NA	NA	NA	5820883	5808463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5808725_5808827_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750
40060	chr5	+	3097	18	NNC	ENSMUSG00000014668.16	novel	3201	19	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	103.983862202824	6	116	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTCTTGTGTTGTACTCC	NA	False	NA	NA	False	NA	NA	NA	110283743	110319833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110283801_110283916_110284061_110288241_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318734
40062	chr5	+	1512	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	3	-2	intron_retention	FALSE	canonical	3	449	junction_3	34.4211610282194	67	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCAGCTGGTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	66833587	66844570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_66833666_66833778_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
40063	chr4	+	2824	7	ISM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	59	269	18	-269	intron_retention	FALSE	canonical	3	1348	junction_4	89.3353544547485	4	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGAAATGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	132495704	132505794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558
40064	chr19	+	2747	12	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-51	74	intron_retention	FALSE	non_canonical	0	0	junction_2	414.173078365766	1	133	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGGTAATAATTTTCCC	86	False	NA	NA	False	NA	NA	NA	46064250	46072974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067187_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071807_46071964_46072025_46072189_46072279_46072450
40066	chr7	+	2364	8	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	588	3	-20	-2	3prime_fragment	FALSE	canonical	3	394	junction_5	16.39686381163	673	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTATGTTGTACTGTCT	NA	False	NA	NA	False	NA	NA	NA	143383950	143402144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
40068	chr17	-	1736	4	NNC	ENSMUSG00000047407.18	novel	1714	3	NA	NA	165	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	360.644176747972	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTGCAATGAAGAGCATT	NA	False	NA	NA	False	NA	NA	NA	71158564	71151208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71152268_71153166_71153394_71157866_71158057_71158304
40069	chr9	+	2703	22	NNC	ENSMUSG00000032295.16	novel	3820	26	NA	NA	-9	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	75.4187704070095	17	73	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTAGATTAGCAGCACTA	NA	False	NA	NA	False	NA	NA	NA	57038042	57049474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045116_57046560_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047916_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
40070	chrX	+	2111	19	NNC	ENSMUSG00000031360.15	novel	3289	19	NA	NA	16	2	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	50.5288390945895	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGCCCGGCAGAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	161684643	161814317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161684705_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
40071	chr4	-	1799	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	4	0	-4	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	1156	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGCCTTCGTCTACACG	NA	False	NA	NA	False	NA	NA	NA	155170828	155158570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
40072	chr10	+	1549	11	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	11	-1258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	458.308640546957	1	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGACTTAAGATTAAACT	NA	False	NA	NA	False	NA	NA	NA	128173613	128197090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194357_128195100_128195169_128195302_128195405_128195812_128196023_128196836
40073	chr11	-	2542	11	FSM	ENSMUSG00000005949.10	ENSMUST00000006103.9	2570	11	23	5	2	-4	multi-exon	FALSE	canonical	3	46	junction_10	9.23525852372309	134	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTACACTCGGAACGTTTA	4488	False	NA	NA	False	NA	NA	NA	73089845	73074426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
40074	chr16	+	1130	6	ISM	ENSMUSG00000022517.18	ENSMUST00000229038.2	2250	17	38165	2690	-2860	-358	internal_fragment	FALSE	canonical	3	137	junction_5	120.58789325633	1	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCCAAACATACTTATAATA	684	False	NA	NA	False	NA	NA	NA	4742296	4752595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058
40075	chr5	+	2400	5	NNC	ENSMUSG00000029464.11	novel	2198	7	NA	NA	-13	10	intron_retention	FALSE	canonical	1	3	junction_2	209.756257356008	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAAATAAAGAAAATATCT	8102	False	NA	NA	False	NA	NA	NA	122510576	122520914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122510720_122511973_122512276_122516529_122516698_122518043_122518169_122519252
40076	chr5	+	2872	7	FSM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	32	10	-5	-10	multi-exon	TRUE	canonical	3	52	junction_5	7.43116560320265	96	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATAAACATGGACTGTCT	5178	False	NA	NA	False	NA	NA	NA	24369992	24389001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24380451_24380529_24382997_24383085_24386078_24386164_24386905
40077	chr10	+	2247	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	6	-20	5	-1	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTATACTGGTTT	5899	False	NA	NA	False	NA	NA	NA	78410833	78420333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
40078	chr16	-	1975	6	NIC	ENSMUSG00000022540.17	novel	1431	11	NA	NA	-471	0	intron_retention	FALSE	canonical	3	413	junction_5	36.6442355630459	31	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	4830160	4826593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828807_4829475
40079	chr6	-	1793	6	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	229	6808	6	2468	5prime_fragment	FALSE	canonical	3	8555	junction_3	795.266596808894	2	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCGCAGACAACTGAGGT	8919	False	NA	NA	False	NA	NA	NA	122719475	122711575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
40080	chr1	+	1512	11	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	0	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	310.349480424891	23	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGTTTGTTCTATTCCAT	NA	False	NA	NA	False	NA	NA	NA	15875887	15913655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144_15913200_15913316
40083	chr5	+	3345	4	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	-13	429	intron_retention	FALSE	canonical	3	15	junction_1	87.2098363463409	11	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATTTGTGCTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	123366307	123387019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_123366508_123377604_123379997_123384256_123384346_123386355
40085	chrX	-	632	2	ISM	ENSMUSG00000031387.15	ENSMUST00000135213.8	416	3	3553	8	3553	-7	3prime_fragment	FALSE	canonical	3	1965	junction_1	0	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCACATGCTTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	72966454	72965735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72965870_72965956
40087	chr9	-	2042	5	NNC	ENSMUSG00000032199.14	novel	2200	4	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1012.76660070324	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACCAATCAGAGCAGCTC	2470	False	NA	NA	False	NA	NA	NA	71393217	71385767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_71386823_71388623_71388829_71390448_71391088_71392965_71393037_71393145
40088	chr7	-	2550	12	NIC	ENSMUSG00000030846.16	novel	2319	13	NA	NA	36	-2	intron_retention	FALSE	canonical	3	16	junction_7	81.0345299321364	405	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGACTATAAATTTTG	NA	False	NA	NA	False	NA	NA	NA	128063340	128044005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128048454_128048832_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
40089	chr1	-	2479	10	FSM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	49	5	36	-5	multi-exon	FALSE	canonical	3	38	junction_3	13.0705587551887	52	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACACTGTTGTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	130390432	130366768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
40090	chr7	-	2313	15	NIC	ENSMUSG00000037032.17	novel	2690	15	NA	NA	-19	-48	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	53.8097555831502	3	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATCCCAGACCCCATGA	NA	False	NA	NA	False	NA	NA	NA	105230418	105208109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105224636_105224752_105230341
40091	chr17	+	2104	7	NNC	ENSMUSG00000005936.20	novel	3853	7	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	196.672033825068	1	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGTATTGAAGAACAAGT	NA	False	NA	NA	False	NA	NA	NA	29171459	29186913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29171544_29180387_29180594_29181790_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
40092	chr11	-	1346	6	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	45	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	10358.5947579776	6	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTTGTTTATTTGTTGA	9986	False	NA	NA	False	NA	NA	NA	69812167	69807537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808606_69809976_69810163_69811166_69811261_69811988
40093	chr3	-	2263	3	ISM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	35961	164	14417	-164	3prime_fragment	FALSE	canonical	3	308	junction_2	180.5	1	96	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTAAAATTGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	104735860	104730258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104732441_104732722_104732786_104735842
40094	chr9	-	1225	5	NIC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-8	-16	combination_of_known_junctions	FALSE	canonical	3	158	junction_4	926.927552454883	222	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATACTCTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	21671607	21666753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671547
40095	chr4	-	1220	12	NNC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	542.61052497918	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6377	False	NA	NA	False	NA	NA	NA	129494441	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490003_129490115_129490666_129490733_129492747_129492836_129494201_129494295_129494386
40096	chr15	+	2558	8	FSM	ENSMUSG00000023034.8	ENSMUST00000228985.2	2553	8	-15	10	-15	-10	multi-exon	FALSE	canonical	3	104	junction_1	37.8897433754997	188	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTGAAATTGAGTCTTT	502	False	NA	NA	False	NA	NA	NA	101152134	101172666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101152233_101156188_101156308_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
40098	chr13	+	2696	7	Antisense	novelGene_ENSMUSG00000114524.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	118	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTAGGTTGCTCAAGG	NA	False	NA	NA	False	NA	NA	NA	58323977	58339968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_58325845_58327043_58327206_58327364_58327483_58328635_58328720_58330995_58331139_58339535_58339782_58339892
40099	chr1	-	3001	12	FSM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	37	2532	9	819	multi-exon	FALSE	canonical	3	56	junction_4	6.18449140061635	127	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGAAGAGTACGTTTATT	NA	False	NA	NA	False	NA	NA	NA	192812543	192789241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
40100	chr19	+	3907	12	ISM	ENSMUSG00000024687.12	ENSMUST00000025590.11	4488	14	7735	-2	7735	2	3prime_fragment	FALSE	canonical	3	144	junction_1	15.7595569850055	88	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTGATTTGCTTCTA	7601	False	NA	NA	False	NA	NA	NA	11951039	11971478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_11951273_11955165_11955365_11955600_11955704_11955994_11956050_11956232_11956365_11961267_11961514_11961755_11961877_11965712_11965817_11966568_11966665_11967964_11968147_11968958_11969180_11969263
40101	chr11	+	3769	4	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	-16	-4	intron_retention	TRUE	canonical	3	14	junction_1	2.49443825784929	4	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAACCCCATGTACCTCA	NA	False	NA	NA	False	NA	NA	NA	22958448	22973720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22958627_22965654_22965885_22969999_22971134_22971493
40102	chr5	+	2491	6	Antisense	novelGene_ENSMUSG00000025747.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAGGACCTTCCTGGC	2562	False	NA	NA	False	NA	NA	NA	30266105	30278579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30266132_30266965_30267700_30267926_30269187_30273465_30273638_30276630_30276705_30278354
40104	chr17	-	4540	4	FSM	ENSMUSG00000023961.17	ENSMUST00000024757.14	4560	4	19	1	19	-1	multi-exon	FALSE	canonical	3	12	junction_3	10.2740233382816	63	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCAGCCTTCTTAATTT	NA	False	NA	NA	False	NA	NA	NA	44416681	44407199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416539
40105	chr3	-	1204	8	NNC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	222	-7	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	91.0066155926736	20	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTTGTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	107876377	107871018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876298
40106	chr3	-	2671	14	NIC	ENSMUSG00000028078.15	novel	3486	16	NA	NA	14004	-24	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	85.0835301371054	2	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAATAAACTCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	86813473	86693489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86694720_86699375_86699419_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191
40108	chr17	+	2142	3	Intergenic	novelGene_55	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	115	junction_2	52.5	1	90	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCCCAAGTATGCTGCTC	NA	False	NA	NA	False	NA	NA	NA	17422973	17426650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17423084_17423325_17423387_17424679
40109	chr1	+	2317	7	NNC	ENSMUSG00000026240.13	novel	2231	7	NA	NA	2016	-159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	137.621461504617	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCCATATCCTCACT	NA	False	NA	NA	False	NA	NA	NA	86516879	86534541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779_86532902_86533004
40110	chr8	-	1605	10	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	-16	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	158.993361147215	5	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTGGTACTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83500805	83490248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493928_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
40112	chr19	+	2767	10	NNC	ENSMUSG00000045098.20	novel	3290	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	115.291900072044	95	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAACTTTGTTTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	3818164	3858829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854900_3855054_3857224_3857465_3857530
40113	chr7	+	2555	1	Intergenic	novelGene_3030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCCAAATGGTTGTATAC	NA	False	NA	NA	False	NA	NA	NA	123023265	123025820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_123023300_123025800
40114	chr2	-	2561	19	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5256	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	45.4111532501232	107	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	NA	False	NA	NA	NA	71164440	71105086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71159421_71159480_71160268_71160375_71163948_71164065_71164384
40115	chr18	-	2053	14	NIC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	2	-74	intron_retention	FALSE	canonical	1	11	junction_4	301.429316981767	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAATCCCTTTTACAAC	NA	False	NA	NA	False	NA	NA	NA	34784769	34766804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442
40116	chr1	-	1634	7	NNC	ENSMUSG00000040843.11	novel	4380	7	NA	NA	-4	660	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	206.750050382904	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATAGTTTGCTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	165064505	165042490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056004_165064388
40117	chr6	-	3638	18	ISM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	34649	-4	-34052	4	3prime_fragment	TRUE	canonical	3	100	junction_17	14.3808792701043	94	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAGTGAGTGTATAATA	NA	False	NA	NA	False	NA	NA	NA	39500152	39439307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589
40118	chr5	-	2281	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	200.074526930668	1	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTAAGTTTGTGAGCCT	1958	False	NA	NA	False	NA	NA	NA	138185482	138176889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181000_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
40119	chr13	-	2240	6	NNC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	218.358787320318	10	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGTCTAAAGTTACTA	NA	False	NA	NA	False	NA	NA	NA	54616621	54606649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615734_54616345
40120	chrX	-	3534	2	FSM	ENSMUSG00000045284.10	ENSMUST00000060481.9	3509	2	-28	3	-28	-3	multi-exon	FALSE	canonical	3	37	junction_1	0	96	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCACCTCTGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	43879102	43875449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_43877171_43877289
40121	chr13	+	2047	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	-15	3	-15	-3	multi-exon	FALSE	canonical	3	36	junction_1	0	186	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGAGGCCTGTTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	14804723	14812785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14804870_14810884
40124	chr17	+	2757	2	NNC	ENSMUSG00000079605.6	novel	2796	2	NA	NA	20	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	80	10	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACAGTAGACTGGCTTGA	NA	False	NA	NA	False	NA	NA	NA	27192160	27195173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27192274_27192529
40126	chr6	-	1855	4	NNC	ENSMUSG00000032641.19	novel	1610	4	NA	NA	-119	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	16.9705627484771	4	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTGATTTACTTAGTTTT	NA	False	NA	NA	False	NA	NA	NA	134874166	134846115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_134847446_134864592_134864749_134867129_134867457_134874124
40127	chr15	-	2868	16	FSM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	10	11	9	-11	multi-exon	FALSE	canonical	2	22	junction_13	7.67854152818099	1	92	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGCAGTGGCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	66841479	66801177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
40128	chr8	-	3145	5	FSM	ENSMUSG00000034189.6	ENSMUST00000036049.6	3141	5	-7	3	-7	-3	multi-exon	TRUE	canonical	3	107	junction_4	18.9274932307477	67	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGTCCCGCCACCAGAG	NA	False	NA	NA	False	NA	NA	NA	120301929	120288730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294731_120301830
40129	chr17	-	2452	13	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-1451	2	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_12	27.4969695299925	12	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGACCCCCCCTCTCCTT	6673	False	NA	NA	False	NA	NA	NA	29404528	29376887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29404334
40130	chr9	+	1658	7	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	10	-3	intron_retention	FALSE	canonical	3	918	junction_5	64.2668049791043	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTTGAAAATGAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	20914223	20920124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918837_20918926_20919196_20919789
40132	chr9	+	1909	10	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	91	-2	intron_retention	FALSE	non_canonical	0	0	junction_8	80.958761030875	1	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGGTCTCTAGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	108174211	108179499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108178578_108178668_108178718_108178756
40133	chr10	-	3433	11	NIC	ENSMUSG00000062075.14	novel	3531	12	NA	NA	3	-3	intron_retention	FALSE	canonical	3	226	junction_7	23.5501592351305	160	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGCCTCAGAGTAGATCT	3114	False	NA	NA	False	NA	NA	NA	80754076	80737200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
40134	chr10	-	2726	12	ISM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	2329	9	2318	-7	3prime_fragment	FALSE	canonical	3	52	junction_6	12.2197509814884	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATCTTTCCTGGTTCCCG	NA	False	NA	NA	False	NA	NA	NA	75477496	75472548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266
40135	chr9	-	2391	12	NNC	ENSMUSG00000031935.10	novel	3964	12	NA	NA	5	127	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	51.8572420566213	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTAAAAAAATCTCCCCAA	NA	False	NA	NA	False	NA	NA	NA	15191222	15173175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187180_15187362_15188852_15189020_15190845
40136	chr5	+	2901	16	ISM	ENSMUSG00000035851.15	ENSMUST00000120498.8	3269	17	11405	0	-17	0	3prime_fragment	FALSE	canonical	3	183	junction_12	35.3738132898712	186	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	86963496	86984518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_86963590_86964322_86964652_86964765_86965193_86967944_86968035_86968491_86968546_86969110_86969206_86970454_86970564_86970649_86970768_86974585_86974671_86975813_86975981_86978412_86978496_86979522_86979560_86979655_86979696_86979806_86979870_86981366_86981502_86983542
40137	chr6	+	2473	10	NNC	ENSMUSG00000047515.9	novel	323	2	NA	NA	-13081	-5000	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	36	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCTGTTCCCGCTGGCC	NA	False	NA	NA	False	NA	NA	NA	136791542	136805162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_136791637_136793045_136793231_136793940_136795028_136797502_136797697_136798174_136798377_136798527_136798661_136799791_136799989_136801327_136801424_136802964_136803105_136805017
40138	chrX	-	3358	7	NIC	ENSMUSG00000031167.17	novel	2792	7	NA	NA	605	0	intron_retention	FALSE	canonical	2	12	junction_5	493.460372156558	1	128	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGTGTGTTACACGTA	7184	False	NA	NA	False	NA	NA	NA	8011313	8005216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8007448_8009065_8009195_8009489_8009569_8009896_8009991_8010086_8010685_8010811_8010919_8011193
40140	chr19	-	1573	7	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-36	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	445.799437963855	9	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCGCTGCCTCTGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	7183635	7175578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176594_7176807_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
40143	chr10	+	1617	6	NIC	ENSMUSG00000075706.12	novel	959	7	NA	NA	141	-4	intron_retention	FALSE	canonical	3	7423	junction_4	778.071050740226	27	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGCTGTGTGTCTTTG	796	False	NA	NA	False	NA	NA	NA	79889462	79892269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79891782_79891873_79891934_79892019
40144	chr19	+	1253	8	Antisense	novelGene_ENSMUSG00000024982.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGGGGCCAACAGGAGGA	333	False	NA	NA	False	NA	NA	NA	55286746	55300116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_55287317_55290985_55291037_55291122_55291267_55292126_55292171_55292841_55293012_55297337_55297390_55298174_55298337_55300056
40146	chr11	+	1900	4	NNC	ENSMUSG00000018286.7	novel	798	6	NA	NA	4	-19	intron_retention	FALSE	non_canonical	0	0	junction_1	2774.90432267493	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGTTTGTTTTATGTGC	NA	False	NA	NA	False	NA	NA	NA	70416196	70418665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70416739_70417076_70417252_70417369_70418150_70418262
40147	chr11	+	2505	6	FSM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	11	4	11	-4	multi-exon	TRUE	canonical	3	26	junction_4	7.30479294709987	94	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGCCTAAGACTGGTAT	3868	False	NA	NA	False	NA	NA	NA	121312237	121322110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_121312430_121315751_121315904_121316380_121316473_121317446_121317530_121319870_121319994_121320247
40148	chr4	-	2415	8	NIC	ENSMUSG00000025413.14	novel	2121	10	NA	NA	-5	2	intron_retention	FALSE	canonical	1	3	junction_4	104.413229281445	3	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTGTGTTGTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	106536103	106519454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_106520429_106522852_106522936_106524692_106525452_106527645_106527733_106531607_106531686_106533794_106533957_106535381_106535500_106535949
40149	chr3	-	884	6	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-13	-1660	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	166.639011038832	53	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGTGTTGGGATTAAAG	1297	False	NA	NA	False	NA	NA	NA	95041263	95039263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95039346_95039785_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
40150	chr9	-	1806	11	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	2440	-1	intron_retention	FALSE	canonical	3	232	junction_9	46.626601849159	39	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACCCCCTGGTACCAGTG	8052	False	NA	NA	False	NA	NA	NA	57669151	57657995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998
40153	chr12	-	1851	3	NNC	ENSMUSG00000041716.8	novel	2795	2	NA	NA	892	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	48	6	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATCTTTGTATACATTG	6382	False	NA	NA	False	NA	NA	NA	102724039	102707988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_102709428_102709481_102709654_102723799
40154	chr16	-	2479	15	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	10	-7	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	199.470280636347	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCACTAGTTGATATTCT	NA	False	NA	NA	False	NA	NA	NA	30406371	30380195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389859_30390355_30392010_30392188_30393363_30393425_30396716_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
40155	chrX	-	1447	11	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	23	-11	intron_retention	FALSE	canonical	3	210	junction_10	373.20476953008	297	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCCAGAACTTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	72830205	72822579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830133
40156	chr7	-	2254	7	FSM	ENSMUSG00000051007.16	ENSMUST00000156353.8	2348	7	14	80	0	-16	multi-exon	FALSE	canonical	3	166	junction_4	10.4721853816033	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCATGTGCCATCACCTG	5497	False	NA	NA	False	NA	NA	NA	140993989	140988127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140990799_140990898_140991005_140991710_140991788_140993914
40157	chr11	-	3455	17	NIC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	-841	-98	intron_retention	FALSE	canonical	3	32	junction_11	6.84624669070579	9	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTGAGCCGTCGCAGTC	NA	False	NA	NA	False	NA	NA	NA	69782158	69772490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781319_69781414_69781469_69781689
40158	chr15	-	2380	16	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	91	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	207.034768953322	1	95	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAAAAAAAACCTCTG	NA	False	NA	NA	False	NA	NA	NA	81613972	81588805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596332_81597083_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
40159	chr2	-	2432	15	FSM	ENSMUSG00000075023.12	ENSMUST00000099690.4	2224	15	-218	10	-218	-4	multi-exon	FALSE	canonical	3	27	junction_14	17.5243271145093	97	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCCAGCTCCAGGCCT	NA	False	NA	NA	False	NA	NA	NA	93699720	93685715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93699366
40160	chr5	-	1683	9	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-41	-259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	203.434725403506	9	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34093635	34055518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056166_34057812_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
40161	chr10	+	986	7	ISM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	24	0	24	0	intron_retention	FALSE	canonical	3	9741	junction_1	903.91592529394	20	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4936	False	NA	NA	False	NA	NA	NA	127871467	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113
40162	chr18	+	3264	18	NNC	ENSMUSG00000024498.17	novel	4417	22	NA	NA	-5642	-6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	176.517915222404	1	41	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATGTGGATTGTAAAT	NA	False	NA	NA	False	NA	NA	NA	42663715	42708613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_42663956_42668149_42668246_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
40163	chrX	-	3967	29	NNC	ENSMUSG00000031161.16	novel	4069	29	NA	NA	-21	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.076362025808	1	212	21	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGCTACAAAACCTGAAGA	NA	False	NA	NA	False	NA	NA	NA	7814098	7796376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7796664_7796700_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803705_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806318_7808246_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
40164	chr11	-	3641	29	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	-7	-1425	combination_of_known_junctions	FALSE	canonical	1	9	junction_14	49.5636058051486	78	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTATTCAAAGCAGCACAT	NA	False	NA	NA	False	NA	NA	NA	33463649	33163219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33354037_33354200_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
40165	chr10	+	2927	7	NNC	ENSMUSG00000035621.14	novel	3597	8	NA	NA	-189	-3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	6.23832242407097	271	12	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACCTCTTGCCCCTGGCT	1444	False	NA	NA	False	NA	NA	NA	79986101	79994198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79986148_79987211_79987300_79987494_79987558_79989649_79989968_79990167_79990307_79990967_79991241_79992198
40166	chr1	-	2519	6	NNC	ENSMUSG00000039246.9	novel	1578	5	NA	NA	-4	-156	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	61.9593415071529	20	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAATTTACTGACTTTC	NA	False	NA	NA	False	NA	NA	NA	185849511	185820083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_185820966_185821640_185821757_185832389_185832560_185833788_185834882_185846460_185846561_185849353
40167	chr7	-	2874	23	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-11	-5	combination_of_known_splicesites	FALSE	canonical	3	14	junction_12	41.3015518088386	1	93	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATTTCTGAGCCTCATG	NA	False	NA	NA	False	NA	NA	NA	140697697	140681142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
40168	chr9	+	2556	8	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	785	junction_2	69.7131147442641	7	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	NA	False	NA	NA	NA	20799560	20803474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20802012_20802200_20802309_20802378_20802503_20802582_20803044_20803127
40169	chr14	-	1670	8	NNC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-14	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1493.44729278489	2	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACCAGGAATTTGAAGG	8711	False	NA	NA	False	NA	NA	NA	52341499	52311918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312562_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
40170	chrX	-	2512	13	NNC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	13	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	355.136466336847	1	107	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATTTTTGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	95000506	94978944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990673_94991363_94991462_94993948_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
40171	chr15	+	1898	10	Antisense	novelGene_ENSMUSG00000059323.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTGGGTTATCCTCATC	NA	False	NA	NA	False	NA	NA	NA	76510436	76517459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_76510685_76512950_76513083_76513456_76513530_76513864_76514044_76514678_76514849_76515030_76515328_76515988_76516069_76516156_76516312_76516806_76516884_76516972
40172	chr1	+	2294	5	Antisense	novelGene_ENSMUSG00000016481.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	66	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCATTATGGGAACTCGG	NA	False	NA	NA	False	NA	NA	NA	194796405	194813868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_194797146_194799780_194800188_194805996_194806084_194811453_194812316_194813670
40173	chr5	+	2737	1	Antisense	novelGene_ENSMUSG00000015882.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTGTATCTTCTAAAC	NA	False	NA	NA	False	NA	NA	NA	45880603	45883340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_45880600_45883300
40174	chr16	-	302	1	ISM	ENSMUSG00000012114.18	ENSMUST00000231494.2	467	2	19952	13	19877	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAGTAGCTCAGAGGTCT	9930	False	NA	NA	False	NA	NA	NA	17520808	17520506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_17520500_17520800
40176	chr8	-	3845	17	Antisense	novelGene_ENSMUSG00000109652.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGAGCTCCGACTGGGG	NA	False	NA	NA	False	NA	NA	NA	23428092	23349566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_23349646_23351900_23352816_23393121_23393232_23397660_23397778_23398258_23398339_23400145_23400284_23401675_23401991_23404282_23404402_23409338_23409455_23413528_23413671_23415294_23415459_23416389_23416487_23419231_23419464_23420180_23420393_23422128_23422727_23425491_23425813_23428002
40178	chr5	-	1740	13	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-6	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	115.528135101368	5	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCAAGTGCCTTTCCGTC	NA	False	NA	NA	False	NA	NA	NA	34794490	34790997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793000_34793364_34793469_34793753_34793851_34793937_34794128_34794270
40179	chr15	-	1479	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1030.18776605691	1	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2691	False	NA	NA	False	NA	NA	NA	43146087	43113453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124559_43125990_43126097_43126604_43126732_43128892_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
40180	chr6	-	1292	6	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-12	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2940.68974222035	5	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATAATTCTAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	51446886	51439760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440461_51443431_51443686_51443885_51444033_51444164_51444276_51446650
40181	chr6	-	1898	9	NNC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	86.8920846510199	558	4	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5286	False	NA	NA	False	NA	NA	NA	126916529	126900377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905239_126906955_126907066_126911676_126911813_126912915_126912972_126916456
40182	chr5	+	2946	13	NIC	ENSMUSG00000079109.12	novel	2116	15	NA	NA	-1399	1	intron_retention	FALSE	canonical	3	5	junction_10	31.6081696542032	2	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCATGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	143848736	143868261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862320_143864916_143865861_143865998_143866169_143867833
40183	chr7	-	2126	12	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	479.854351180759	1	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102819	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143074120_143074178_143077880_143078036_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088151_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
40184	chr2	-	3094	3	NNC	ENSMUSG00000079043.4	novel	3015	2	NA	NA	17	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	107	1	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGATCCACAAAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	130471930	130455765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130458663_130470453_130470556_130471835
40185	chr8	-	1821	20	NNC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	176.271683407152	2030	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3356	False	NA	NA	False	NA	NA	NA	105261246	105237659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243403_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
40186	chr4	-	2376	3	NIC	ENSMUSG00000028741.14	novel	756	4	NA	NA	-5	-4	intron_retention	FALSE	canonical	3	908	junction_1	47	9	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGAGACTCTTTCTTTT	5956	False	NA	NA	False	NA	NA	NA	139079627	139074759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_139077029_139077746_139077806_139079579
40187	chr17	+	1757	8	NNC	ENSMUSG00000034681.18	novel	1920	9	NA	NA	365	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	628.635418820733	1	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGATTAGAATGCAAATTG	1297	False	NA	NA	False	NA	NA	NA	24634032	24644855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24634124_24637011_24637193_24637430_24637587_24639179_24639347_24640755_24640826_24641123_24641278_24643375_24643518_24644059
40188	chr10	+	3556	14	ISM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	50	2	-7	2	intron_retention	FALSE	canonical	3	19	junction_5	6.4925993372336	38	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGCCTCCTGTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	80691158	80704540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333
40189	chr8	-	1815	9	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38785	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	73.5049955785319	7	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTTTATTGCTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	43633308	43582842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43588240_43588280_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
40190	chr5	+	2871	13	FSM	ENSMUSG00000025857.11	ENSMUST00000026975.11	3450	13	577	2	571	-2	multi-exon	FALSE	canonical	3	278	junction_3	24.0323855569012	133	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGGCCATCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	139136554	139172263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139136591_139137237_139137423_139138594_139138720_139139112_139139232_139147455_139147689_139148953_139149167_139151814_139151959_139155928_139156098_139159880_139160029_139163669_139163821_139167171_139167329_139170282_139170475_139171264
40191	chr6	-	2091	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	66	2	-6	-2	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	1	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGCTGTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	88022186	87976089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
40192	chr5	+	1788	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	40	5	-19	-5	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCATACAGTTTCATACA	NA	False	NA	NA	False	NA	NA	NA	100187883	100216614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
40193	chr6	+	3574	11	ISM	ENSMUSG00000030276.20	ENSMUST00000203524.3	2745	13	-100	-3	-100	-1	intron_retention	FALSE	canonical	3	13	junction_6	3.96106046406767	56	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAAAGTTCTCTGGGCTTG	NA	False	NA	NA	False	NA	NA	NA	113370020	113391547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_113370156_113371652_113371822_113371958_113372057_113374890_113375020_113375730_113375846_113376627_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865_113386302_113389749
40194	chr14	-	2234	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	0	-32	0	32	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	193	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGTTGTTGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	59835393	59801392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
40195	chr15	+	2142	10	Antisense	novelGene_ENSMUSG00000035845.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCCAAGTCTTTGCCCG	NA	False	NA	NA	False	NA	NA	NA	88689447	88703534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_88690256_88690599_88690678_88690760_88690925_88695499_88695724_88696258_88696367_88698660_88698852_88699496_88699671_88700060_88700194_88700269_88700457_88703459
40196	chr5	+	3172	21	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	66	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	187.287239287678	1	139	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTTTGAGAAACTGCATCA	NA	False	NA	NA	False	NA	NA	NA	45827326	45857449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837318_45838720_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850517_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853818_45853887_45856182_45856253_45857189
40197	chr2	-	3018	15	NNC	ENSMUSG00000034101.15	novel	5380	19	NA	NA	-6	641	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	85.1062061575454	1	108	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCGGAATCAAAAATCAGGTA	NA	False	NA	NA	False	NA	NA	NA	84481095	84438689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441151_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
40198	chr1	-	3243	18	NNC	ENSMUSG00000026235.15	novel	6328	18	NA	NA	1	184	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	41.6127309505472	1	132	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCGATGCTGTATTTCCC	NA	False	NA	NA	False	NA	NA	NA	77491715	77350065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483658_77483726_77483849_77488319_77488388_77491577
40199	chr17	+	2571	8	NNC	ENSMUSG00000024308.16	novel	2898	8	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	79.1111334046696	5	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGCCTCTCATTCTCCC	564	False	NA	NA	False	NA	NA	NA	34138577	34148266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34138699_34138844_34139025_34139222_34139484_34144438_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
40200	chr10	+	2151	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	21	5	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	114.93186387305	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTGGCTCAAGTGA	NA	False	NA	NA	False	NA	NA	NA	44144431	44240292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_44144581_44162027_44162194_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
40201	chrX	-	1592	1	ISM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	22408	3	22350	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93233907	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_93232300_93233900
40202	chr15	-	4647	5	FSM	ENSMUSG00000022361.15	ENSMUST00000110168.8	5212	5	66	499	46	-197	multi-exon	FALSE	canonical	1	2	junction_2	17.7816619020833	31	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTTGCTGATTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	57939819	57910897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_57912182_57915619_57918479_57927450_57927577_57932714_57932826_57939552
40203	chr15	-	1553	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	412	1381	-37	400	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGACATACGGTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	81283832	81249250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
40205	chr5	-	1318	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	-21	0	8	0	multi-exon	FALSE	canonical	3	68	junction_4	339.384075967639	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	NA	False	NA	NA	NA	135378889	135320557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
40206	chr11	-	1872	2	Antisense	novelGene_ENSMUSG00000080951.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17553	40	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATGCTCTGAGTGACAG	9046	False	NA	NA	False	NA	NA	NA	52297671	52295440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_52296670_52297028
40208	chr1	+	1599	4	NIC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	31	-8	intron_retention	FALSE	canonical	3	984	junction_3	136.477104306913	9	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGATTCTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	172327842	172334939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_172327900_172332686_172332895_172333327_172333856_172334133
40210	chr8	-	607	2	NNC	ENSMUSG00000051176.7	novel	1744	4	NA	NA	10457	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATGAGTTCAATTTCT	NA	False	NA	NA	False	NA	NA	NA	43749516	43748105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43748651_43749454
40211	chr4	+	2193	10	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	-239	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	195.995527789744	1	72	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTGCTCTGTCTCATGT	NA	False	NA	NA	False	NA	NA	NA	130640196	130663444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130640218_130640512_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662950_130663292
40215	chr3	+	2510	7	NNC	ENSMUSG00000037730.14	novel	5555	8	NA	NA	5015	63	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	70.4264786063373	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCAGCTAATCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	30661807	30672580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699_30671104_30671156
40216	chr12	-	700	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	25	229	25	0	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	7	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685927	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
40217	chrX	+	1463	5	NNC	ENSMUSG00000015217.12	novel	1571	5	NA	NA	5	-25	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	347.83140671883	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTCTGTATTACAACGGC	NA	False	NA	NA	False	NA	NA	NA	70599538	70604257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70599615_70601726_70601814_70602038_70602179_70602703_70602879_70603272
40218	chr9	-	4405	28	ISM	ENSMUSG00000052698.16	ENSMUST00000215267.2	4999	33	9413	-253	9413	-4	3prime_fragment	TRUE	canonical	3	58	junction_25	13.4357180127643	55	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGCAAAGCTGTTTCAG	NA	False	NA	NA	False	NA	NA	NA	67225533	67127939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_67128801_67131257_67131384_67134389_67134573_67134663_67134727_67136613_67136740_67147961_67148087_67149608_67149715_67157824_67157933_67163140_67163327_67165469_67165587_67165743_67165870_67169172_67169357_67170095_67170263_67174058_67174206_67179891_67180012_67182602_67182705_67185264_67185412_67193739_67193911_67197263_67197366_67201086_67201220_67202916_67203099_67203583_67203725_67209755_67209918_67212117_67212262_67213701_67213825_67216151_67216242_67219082_67219177_67225464
40220	chr7	-	2485	10	Antisense	novelGene_ENSMUSG00000031016.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	205	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGGAGTTTAACAGAGCCG	9763	False	NA	NA	False	NA	NA	NA	109742487	109723714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109723869_109725013_109725073_109725200_109725376_109725907_109726029_109730034_109730182_109733959_109734055_109734838_109734929_109738353_109738527_109738768_109738915_109741162
40221	chr16	+	3226	28	NNC	ENSMUSG00000038084.17	novel	3153	29	NA	NA	0	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	103.315888611124	1	146	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCAAATACTTGAATGTG	NA	False	NA	NA	False	NA	NA	NA	29398209	29449165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432851_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901
40222	chr17	+	2046	6	NNC	ENSMUSG00000007039.13	novel	1342	7	NA	NA	7	-4	intron_retention	FALSE	canonical	3	33	junction_4	177.711451516215	2	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGATAAGGGCTGTGACTG	NA	False	NA	NA	False	NA	NA	NA	35278083	35281063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280500_35280602_35280766
40223	chr11	-	1734	12	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	8527	6005	8496	-6005	internal_fragment	FALSE	canonical	3	534	junction_7	62.8751879217736	1	25	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCGTCTCCTATATGAA	NA	False	NA	NA	False	NA	NA	NA	40615722	40598226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699
40224	chr2	+	3465	16	Antisense	novelGene_ENSMUSG00000103285.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	171	10	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGCCCGCTCCGGCGCTC	NA	False	NA	NA	False	NA	NA	NA	155913772	155953851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_155915581_155915717_155915956_155916095_155916227_155918153_155918207_155919316_155919376_155919475_155919611_155919696_155919753_155919846_155919939_155920067_155920143_155920239_155920339_155920489_155920574_155920670_155920742_155920817_155920897_155920982_155921165_155921260_155921404_155953691
40225	chr3	+	2047	7	NIC	ENSMUSG00000004897.17	novel	2245	6	NA	NA	262	-6	combination_of_known_junctions	FALSE	canonical	3	39	junction_3	1324.72848371112	1363	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGATTCTGACTAATTCT	NA	False	NA	NA	False	NA	NA	NA	87813889	87823433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_87814022_87820397_87820475_87820619_87820759_87821147_87821218_87821358_87821545_87821779_87821998_87822208
40227	chr11	+	1419	3	NNC	ENSMUSG00000020328.11	novel	1577	4	NA	NA	99	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	573.5	1	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGACATGTTGTCACC	NA	False	NA	NA	False	NA	NA	NA	40624669	40630849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_40625073_40627319_40627472_40629985
40228	chr5	-	2234	6	NNC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_1	402.017213561808	12	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	114046769	113980496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982037_113988750_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
40229	chr5	-	2190	7	NNC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	-3	205	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	118.950970291685	50	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTATAAAACCGAGCATT	5469	False	NA	NA	False	NA	NA	NA	150589045	150566259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150579823_150579887_150584743_150585979_150588965
40230	chr11	+	2235	17	NNC	ENSMUSG00000034121.13	novel	688	4	NA	NA	-5037	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	58.3636230883587	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACTGATCCTCTGTGGA	1419	False	NA	NA	False	NA	NA	NA	87739003	87754620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87739055_87745803_87745875_87746297_87746382_87747397_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
40231	chr5	+	3203	7	NIC	ENSMUSG00000029625.17	novel	1756	8	NA	NA	3	-5	intron_retention	FALSE	canonical	3	673	junction_6	62.6243207991556	5	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGCCTGTGTTTCATT	NA	False	NA	NA	False	NA	NA	NA	145104059	145118845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145115739_145117945
40233	chr17	-	2615	7	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-4	388	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	37.0929762743419	187	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTGTGGTTGTTGTTGGT	4819	False	NA	NA	False	NA	NA	NA	23805210	23794429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23803793_23803913_23804411_23804549_23804934
40234	chr11	+	2865	9	Antisense	novelGene_ENSMUSG00000020740.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	98	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGATCAAAGAGCTCCTGA	6782	False	NA	NA	False	NA	NA	NA	115475080	115479946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115476669_115476913_115477023_115477141_115477314_115477822_115478028_115478231_115478545_115478763_115478832_115479145_115479370_115479680_115479804_115479883
40235	chr9	+	1654	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	713.768132341002	1	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1176	False	NA	NA	False	NA	NA	NA	108437665	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440523_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
40236	chr11	-	1099	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	6485.6089922227	25	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113076	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110388_33111136_33111226_33111547_33111628_33112921
40237	chr17	+	5010	2	ISM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	26775	5536	-358	-2986	intron_retention	FALSE	canonical	3	815	junction_1	0	4	116	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACATTTACAGTCAACTG	NA	False	NA	NA	False	NA	NA	NA	6347519	6353053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_6347603_6348126
40238	chr15	-	2121	10	NNC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	394	0	intron_retention	TRUE	non_canonical	0	0	junction_1	154.142390481042	4	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	4538	False	NA	NA	False	NA	NA	NA	98723615	98710677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98711147_98711196_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712833_98712982_98713437_98713539_98713622_98713756_98713867_98723568
40239	chr15	-	1814	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	13	-13	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	17	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTTCTAATCAACCAGG	1258	False	NA	NA	False	NA	NA	NA	82223113	82213745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
40240	chr5	+	1498	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	-3	-3	-3	3	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	984	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCACCATACCTGGTAT	NA	False	NA	NA	False	NA	NA	NA	130058127	130089633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
40241	chr8	+	1679	7	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	-7	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	483.20354579273	9	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCTCTGTGTTTCTGTA	2136	False	NA	NA	False	NA	NA	NA	13388783	13428444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420479_13420647_13427326
40242	chr18	+	1748	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	89	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	48179712	48181460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
40243	chr9	+	891	3	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAATAGTATTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	78385744	78386816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555
40244	chr4	+	2751	8	NIC	ENSMUSG00000028601.19	novel	1307	10	NA	NA	1	0	intron_retention	FALSE	canonical	3	713	junction_3	45.1369797258912	2	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	NA	False	NA	NA	NA	108022715	108036505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
40246	chr4	+	2580	8	NIC	ENSMUSG00000028672.14	novel	1418	9	NA	NA	0	-11	intron_retention	FALSE	canonical	3	659	junction_3	85.4006165441588	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAATATAACATTCAAACGT	NA	False	NA	NA	False	NA	NA	NA	135673775	135689917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135687477_135688093_135688220_135689419
40247	chr4	-	2034	14	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.541379635126	12	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGCTTCTTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	149251113	149234451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149234973_149235101_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
40248	chr6	+	1416	10	NIC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	1294.25618087317	5616	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	NA	False	NA	NA	NA	86986210	87005441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86993157_86993377_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
40249	chr2	+	2642	7	NNC	ENSMUSG00000028640.12	novel	2985	7	NA	NA	60	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	287.842356546465	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGAAAGTCTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	172392970	172400533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_172393142_172393326_172393810_172393915_172393968_172395403_172395553_172395960_172396080_172397984_172398130_172399010
40251	chr16	-	3716	1	Genic_Genomic	ENSMUSG00000097397.3_ENSMUSG00000022515.7	novel	NA	NA	NA	NA	-172	2319	mono-exon	FALSE	NA	NA	NA	NA	NA	24	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACGAGCATGCGCGACC	9036	False	NA	NA	False	NA	NA	NA	4760696	4756980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_4757000_4760700
40253	chr2	-	2885	7	NIC	ENSMUSG00000027233.5	novel	2434	18	NA	NA	60374	-19	intron_retention	FALSE	canonical	3	89	junction_6	10.5422430672456	19	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTAATCTGGGATGTTGC	NA	False	NA	NA	False	NA	NA	NA	121956296	121950607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750
40255	chr14	+	3673	5	NNC	ENSMUSG00000021890.7	novel	4918	6	NA	NA	-13044	-5445	intron_retention	FALSE	non_canonical	0	0	junction_1	0	17	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGGAGACGGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	31203311	31216987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31204888_31209525_31209699_31211125_31211279_31214279_31215922_31216858
40256	chr18	-	3277	17	NNC	ENSMUSG00000024527.11	novel	3094	17	NA	NA	949	-122	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	180.145730937483	4	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAATGGAATGGTTTTC	NA	False	NA	NA	False	NA	NA	NA	67581228	67537955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_67538585_67540335_67540531_67542467_67542669_67547147_67547264_67548568_67548680_67554055_67554182_67554277_67554386_67556014_67556169_67558958_67559097_67562050_67562325_67564723_67564849_67567224_67567300_67573251_67573405_67573511_67573616_67575379_67575458_67575820_67575921_67580638
40257	chr9	+	3771	13	FSM	ENSMUSG00000032010.16	ENSMUST00000034508.14	3867	13	94	2	37	-2	multi-exon	FALSE	canonical	3	29	junction_2	11.1654228162962	67	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGTGTGACGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	43978411	44006922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_43978518_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
40260	chr1	-	2819	13	Antisense	novelGene_ENSMUSG00000026280.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	87	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGCACGCGGGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	93715901	93682637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_93682775_93695772_93695875_93695972_93696045_93701489_93701589_93702852_93702955_93703347_93703423_93705711_93705790_93706006_93706087_93708439_93708628_93712127_93712212_93712473_93713687_93714230_93714323_93715404
40262	chr19	-	1452	4	Antisense	novelGene_ENSMUSG00000011752.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATCGCCGAGATTCTCT	9931	False	NA	NA	False	NA	NA	NA	41907096	41900457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41900622_41904041_41904115_41905099_41905262_41906043
40268	chr11	+	1698	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	17	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3052	False	NA	NA	False	NA	NA	NA	75623755	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75656113_75656186
40270	chr4	-	1682	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	41	573	41	-573	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	2545	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGGTGATTTGTGAGAC	-1	True	NA	NA	False	NA	NA	NA	58987078	58966011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
40271	chr2	-	1990	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-26	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACATCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	152185978	152179350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180477_152180529_152180608_152181634_152181928_152184956_152185248_152185776
40272	chr6	-	899	1	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGGCTCACAACCATA	7472	False	NA	NA	False	NA	NA	NA	122691592	122690693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122690700_122691600
40274	chrX	-	3194	15	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-60	-56495	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	142.023011213978	1	122	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTCTACCATCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	59224509	59157813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205646_59223941
40275	chr3	+	1725	15	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	378.448713264332	3	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	32762881	32781122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766338_32766396_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
40277	chr8	-	2020	14	NNC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	431.322584149767	1	80	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112738007	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729946_112730073_112732263_112732421_112737841
40278	chr14	+	1731	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	16	418	16	26	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	18	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGATTGTGTGTTCTTTT	1702	False	NA	NA	False	NA	NA	NA	26359244	26377995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
40280	chr5	+	2198	12	Intergenic	novelGene_748	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAGATGGCCCCGGGCTC	8351	False	NA	NA	False	NA	NA	NA	92563403	92582943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_92564203_92565332_92565429_92565648_92565765_92567379_92567484_92570340_92570433_92570833_92570893_92572130_92572329_92573480_92573672_92575960_92576186_92578659_92578812_92578896_92578979_92582859
40281	chr10	-	2736	15	NNC	ENSMUSG00000020130.10	novel	3752	17	NA	NA	52	-586	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	123.812069570897	4	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTTTCAGTTACA	NA	False	NA	NA	False	NA	NA	NA	115087320	115034362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065117_115076793_115076853_115087286
40282	chr1	-	1688	5	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-19	5	intron_retention	FALSE	canonical	3	5309	junction_1	792.366510839523	6	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174645	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16171584_16171950_16172161_16172713_16173054_16173391_16173559_16173733
40285	chr13	-	2871	6	FSM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	112	28	-5	-7	multi-exon	TRUE	canonical	3	150	junction_1	21.3672646822189	134	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAATTAAAATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	64460412	64437638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_64440043_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
40286	chr11	+	1738	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	4	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5116.58225771853	2	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3039	False	NA	NA	False	NA	NA	NA	75623742	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623912_75642706_75642907_75646399_75646500_75647642_75647850_75650117_75650229_75655453
40287	chr1	-	2211	11	NNC	ENSMUSG00000026341.17	novel	2554	13	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1103.39376924106	2	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGATGGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	125363440	125320645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333587_125333726_125335028_125335110_125344067_125344118_125345985_125346042_125363021_125363195_125363386
40288	chr5	-	2944	6	NNC	ENSMUSG00000106028.2	novel	489	6	NA	NA	950	3842	intron_retention	FALSE	non_canonical	0	0	junction_3	26.6278050165612	136	35	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACATGCATTTTATTTAG	NA	False	NA	NA	False	NA	NA	NA	109701072	109695915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109698395_109699328_109699436_109699526_109699648_109699757_109699783_109700490_109700560_109700929
40289	chr8	+	2160	16	ISM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	938	12	0	-11	3prime_fragment	FALSE	canonical	3	1116	junction_3	91.8083995189014	1	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATTCTTTAGGACTAGA	NA	False	NA	NA	False	NA	NA	NA	107621220	107649708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
40290	chr4	+	3716	11	Antisense	novelGene_ENSMUSG00002075696.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	186	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACACAGAGAATAAATACT	NA	False	NA	NA	False	NA	NA	NA	56759894	56774993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_56762304_56762837_56762900_56767813_56767869_56769005_56769218_56770982_56771078_56771432_56771556_56772380_56772532_56773017_56773102_56773197_56773335_56774521_56774601_56774684
40291	chr17	-	2445	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	135.013925207736	12	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAGGCTTAATTTCTTTC	5828	False	NA	NA	False	NA	NA	NA	46593930	46568804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46571805_46571836_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593271_46593366_46593885
40292	chr5	+	3946	25	ISM	ENSMUSG00000037890.14	ENSMUST00000204647.3	3381	26	24	65	1	-65	intron_retention	FALSE	canonical	3	27	junction_5	5.76974267671926	19	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTTCTGAATGTGAATA	8595	False	NA	NA	False	NA	NA	NA	65357083	65401864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661
40294	chr2	+	1507	13	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-14	-442	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	294.238423731504	5	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCAACTGGGCTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	164675752	164681497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164680623_164680651_164680764_164680870_164681070
40295	chr11	+	1248	4	ISM	ENSMUSG00000017421.19	ENSMUST00000165565.8	2311	11	9809	103	3957	-103	3prime_fragment	FALSE	canonical	3	261	junction_1	336.802942716097	50	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	NA	False	NA	NA	NA	80283913	80286968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_80284003_80285111_80285358_80285927_80286088_80286215
40296	chr9	+	1649	4	FSM	ENSMUSG00000007656.14	ENSMUST00000168166.8	3944	4	75	2220	10	-2	multi-exon	FALSE	canonical	3	3551	junction_1	1114.80232428096	13	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGGTTTTTTGTTATGCT	NA	False	NA	NA	False	NA	NA	NA	74944970	74965356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_74945002_74945188_74945244_74959514_74959638_74963916
40297	chr11	-	1836	3	Antisense	novelGene_ENSMUSG00000020290.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCCACCTTAAACAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	23219262	23206614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_23206717_23211833_23211965_23217659
40298	chr17	+	1532	1	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	35	-1062	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTTCCTGGACCTGAACC	4638	False	NA	NA	False	NA	NA	NA	25459178	25460710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25459200_25460700
40299	chrX	+	2332	11	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	-653	-26	combination_of_known_junctions	FALSE	canonical	2	4	junction_6	82.5632484826027	2	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTATATGAATAAAAGGC	3109	False	NA	NA	False	NA	NA	NA	7587558	7594395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7588470_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592556_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
40300	chr9	+	1363	1	NIC	ENSMUSG00000032103.11	novel	2144	4	NA	NA	23	-5988	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCCTAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35470784	35472147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_35470800_35472100
40302	chr18	+	1548	6	ISM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	54	90	54	-90	intron_retention	FALSE	canonical	3	263	junction_5	27.9499552772451	938	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATGTAAGCCCAAACCAG	NA	False	NA	NA	False	NA	NA	NA	36893326	36896773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901
40304	chr4	+	2499	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	293	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	255.268166316707	1	106	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTCAGATGATCAGATTA	5341	False	NA	NA	False	NA	NA	NA	89055651	89099311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074855_89089364_89089466_89090381_89090622_89095039_89095163_89097704
40305	chr14	+	1847	9	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-2202	1272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2497.2260985942	1	81	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	149	False	NA	NA	False	NA	NA	NA	63370764	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375564_63375799_63375944_63376447_63376565_63379182_63379312_63379680
40306	chr3	+	1874	5	NNC	ENSMUSG00000037661.15	novel	2523	2	NA	NA	-147	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	86.5144496601579	31	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30909951	30951339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30910035_30931383_30931482_30944090_30944191_30948277_30948390_30949858
40307	chr5	+	1595	8	ISM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	156	4	0	-4	intron_retention	FALSE	canonical	3	4702	junction_3	266.770481492834	11104	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGTCTCTGTAGATTTC	609	False	NA	NA	False	NA	NA	NA	135807489	135819241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479
40308	chr18	+	2692	4	NNC	ENSMUSG00000024521.9	novel	2727	3	NA	NA	119	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	53.2687108493866	3	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATTGAAAAATGCCACTGG	NA	False	NA	NA	False	NA	NA	NA	66591782	66598615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_66591884_66593913_66594070_66595904_66596065_66596340
40309	chr6	+	3656	12	NNC	ENSMUSG00000029670.13	novel	3800	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	46.8999286330494	4	76	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAGCTGAGTGTTCGAT	-21	True	NA	NA	False	NA	NA	NA	21949637	21976037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969988_21970107_21971105_21971308_21971809_21971849_21973581
40310	chr8	+	1083	1	Antisense	novelGene_ENSMUSG00000037070.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCCTCCACTTCCTCCT	5977	False	NA	NA	False	NA	NA	NA	79231909	79232992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_79231900_79233000
40311	chr12	+	1390	6	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	43	-60	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2459.00293615115	13	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTTGAACTTTCATGG	NA	False	NA	NA	False	NA	NA	NA	24758282	24764085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760481_24763321
40313	chr11	-	3162	2	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	2683	21	1395	-4	3prime_fragment	FALSE	canonical	3	1322	junction_1	0	1	163	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGATTCAGCTTAAGTG	1260	False	NA	NA	False	NA	NA	NA	96712156	96708260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_96711343_96712076
40315	chr15	+	2061	8	NNC	ENSMUSG00000032783.10	novel	2639	14	NA	NA	3233	0	intron_retention	FALSE	canonical	1	2	junction_1	38.3027680568432	3	42	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	98976143	98981290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98976205_98976516_98976579_98976664_98976784_98978746_98978831_98979071_98979851_98980006_98980587_98980789_98980984_98981108
40316	chr6	+	2691	14	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	649.601962788885	2	135	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTCTATCCCTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	71808323	71852241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829749_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839330_71839465_71840124_71840255_71845547_71845788_71848414_71848543_71849777_71849908_71851300
40317	chr12	-	1657	7	NIC	ENSMUSG00000020650.16	novel	6155	8	NA	NA	-2	7	combination_of_known_splicesites	FALSE	canonical	3	7	junction_3	144.180153511732	22	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGGAGTTTTTATTCTC	NA	False	NA	NA	False	NA	NA	NA	31684659	31645352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_31646377_31650642_31650744_31667073_31667180_31676724_31676876_31680791_31680893_31684261_31684380_31684603
40318	chr9	-	2771	1	NIC	ENSMUSG00000032366.16	novel	1208	10	NA	NA	2070	4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTACGCTATTCCTGTTT	NA	False	NA	NA	False	NA	NA	NA	66938037	66935266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_66935300_66938000
40319	chr7	+	2850	10	NNC	ENSMUSG00000049643.16	novel	2701	10	NA	NA	11	175	intron_retention	FALSE	non_canonical	0	0	junction_7	107.765978735589	410	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTGAGTTTTTAATCC	460	False	NA	NA	False	NA	NA	NA	27252721	27281699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271165_27274015_27274166_27278137_27278209_27279761
40320	chr2	-	1406	2	FSM	ENSMUSG00000027613.16	ENSMUST00000109638.2	1382	2	-52	28	51	-28	multi-exon	FALSE	canonical	3	1052	junction_1	0	3	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTGATAATAAAACATCCT	NA	False	NA	NA	False	NA	NA	NA	155668635	155667113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155668131_155668246
40322	chr7	-	2319	2	FSM	ENSMUSG00000061787.16	ENSMUST00000138936.2	328	2	-17	-1974	-7	2	multi-exon	FALSE	canonical	3	8882	junction_1	0	14	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTATTGTTCTTGCTG	NA	False	NA	NA	False	NA	NA	NA	80994989	80992477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80994757_80994949
40323	chr12	+	1728	16	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	324	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	369.563526338842	1	47	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7755	False	NA	NA	False	NA	NA	NA	76340162	76366577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348076_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
40324	chr8	+	2738	11	NNC	ENSMUSG00000031904.6	novel	2672	11	NA	NA	46	172	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	150.38048410615	2	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAAGAGGCCTGGAATGT	1907	False	NA	NA	False	NA	NA	NA	106895563	106924649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106895587_106905733_106905920_106906118_106906293_106916248_106916375_106918970_106919067_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
40325	chr15	-	1607	9	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_6	109.401496790492	2	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCATGAAAGTTGCTCTT	6880	False	NA	NA	False	NA	NA	NA	81244981	81203115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222208_81224174_81224242_81228301_81228363_81244877
40328	chrX	-	1518	1	ISM	ENSMUSG00000034551.13	ENSMUST00000113422.9	9534	10	125625	6	125625	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGACCTCTCTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	110481151	110479633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_110479600_110481200
40330	chr13	+	2253	6	NIC	ENSMUSG00000015536.15	novel	1193	7	NA	NA	1	-10	intron_retention	TRUE	canonical	3	133	junction_2	18.6010752377383	22	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATTTATACTAAGCATC	NA	False	NA	NA	False	NA	NA	NA	114954780	114965532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114962818_114964824
40331	chr12	+	3031	10	NIC	ENSMUSG00000021235.14	novel	1602	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	205	junction_4	16.9115345252878	5	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGTGTCTCTTTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	84408814	84420565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84409012_84413658_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
40332	chr3	-	1530	11	ISM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	66	1007	66	-1007	5prime_fragment	FALSE	canonical	3	1537	junction_5	137.52003490401	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGATTGGTGAGAAGGCT	NA	False	NA	NA	False	NA	NA	NA	98247240	98221492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
40333	chr13	+	3516	6	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-4	-9	intron_retention	FALSE	canonical	3	140	junction_3	7.47261667690776	2	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAACAAGTAAATGTTAAT	NA	False	NA	NA	False	NA	NA	NA	68730390	68740388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
40334	chr3	+	1442	2	Genic_Genomic	ENSMUSG00000069014.5	novel	1488	1	NA	NA	-7	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	5433	False	NA	NA	False	NA	NA	NA	54388851	54390346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_54390058_54390110
40335	chr17	+	2125	6	ISM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	11309	164	11027	-7	3prime_fragment	FALSE	canonical	3	227	junction_1	6.11228271597445	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATATTGTGAATTTATT	NA	False	NA	NA	False	NA	NA	NA	79370643	79397643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
40336	chr6	-	1653	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	58	464	11	3	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	8	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828030	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
40337	chr11	-	2135	3	ISM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	0	12200	0	-12200	5prime_fragment	FALSE	canonical	3	250	junction_2	4.5	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCTGCCATCTTCATTC	NA	False	NA	NA	False	NA	NA	NA	98084102	98072936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_98074747_98080007_98080115_98083884
40338	chr10	+	3284	13	Antisense	novelGene_ENSMUSG00000020238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	129	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCGGGCAGCGGCGGCGCC	1038	False	NA	NA	False	NA	NA	NA	81322300	81331979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_81323443_81323516_81323592_81323679_81323737_81324029_81324303_81324384_81324469_81325633_81325971_81326073_81326156_81326461_81327110_81327811_81327894_81328663_81328754_81328892_81329037_81329176_81329370_81331902
40339	chr15	-	1282	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	9979.59910993732	2	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACACTGGTTTTCCCAC	3572	False	NA	NA	False	NA	NA	NA	79967553	79961999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965226_79965815_79965985_79966590_79966784_79967524
40343	chr14	-	1810	15	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	242.915875251042	1	59	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30740976	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736550_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
40344	chr17	-	1889	17	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10089	98	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	309.373535350068	1	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTACTTTTTCTTTCCTTT	2379	False	NA	NA	False	NA	NA	NA	6744510	6708484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716279_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
40345	chr1	-	562	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	119	-27	119	27	mono-exon	FALSE	NA	NA	NA	NA	NA	51	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033644	65033082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033600
40346	chr14	+	1325	15	NNC	ENSMUSG00000021832.9	novel	844	9	NA	NA	194	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	615.338072832773	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCAAAGGACTAACCATAA	NA	False	NA	NA	False	NA	NA	NA	45567511	45587148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567612_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039_45586230_45587079
40349	chr17	-	1244	5	ISM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	613	-2	613	0	3prime_fragment	FALSE	canonical	3	1486	junction_1	54.1219687372882	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCATGTGCTGGTGCAGT	7400	False	NA	NA	False	NA	NA	NA	26051280	26049607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019
40350	chr10	+	1567	12	NNC	ENSMUSG00000006498.17	novel	3169	13	NA	NA	6	-36	intron_retention	FALSE	non_canonical	0	0	junction_6	622.436043380501	42	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTGGGCCTGGATTCAA	1567	False	NA	NA	False	NA	NA	NA	79690444	79700230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695539_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698614_79700047
40351	chrX	+	1623	16	NNC	ENSMUSG00000025287.16	novel	1740	16	NA	NA	66	-138	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	343.487499368204	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTTCACTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	154045566	154080504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_154045671_154047031_154047177_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
40352	chr7	+	2663	14	Antisense	novelGene_ENSMUSG00000037032.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	241	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGGCTGGCAGCCGGCTG	NA	False	NA	105	True	NA	NA	NA	105207690	105230811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105208260_105208339_105208518_105208651_105208765_105214177_105214265_105214509_105214593_105214739_105214857_105215259_105215385_105215753_105215905_105216289_105216354_105216460_105216546_105216633_105216692_105216784_105216961_105222888_105223626_105230691
40354	chr17	+	2122	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	21350	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	115.066285244636	1	123	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17363026	17367100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17363125_17363366_17363428_17364720_17366130_17366462_17366719_17366802
40355	chr14	-	3387	26	Antisense	novelGene_ENSMUSG00000088761.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	137	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACTCTCCACTAGGTGAC	NA	False	NA	NA	False	NA	NA	NA	56726892	56640214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_56640291_56643038_56643122_56658525_56658636_56661976_56662026_56663055_56663129_56665344_56665445_56668934_56669098_56671766_56671851_56672047_56672127_56676058_56676365_56678987_56679073_56697418_56697582_56699335_56699536_56700492_56700650_56703083_56703273_56705119_56705261_56708744_56708901_56712853_56712980_56715063_56715163_56718146_56718274_56719429_56719644_56720524_56720684_56720823_56720938_56722608_56722699_56724415_56724533_56726765
40356	chr5	-	1805	5	NIC	ENSMUSG00000029500.17	novel	2044	6	NA	NA	20	-7	intron_retention	FALSE	canonical	0	0	junction_4	244.835659167532	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTTGTTTATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	110417700	110407027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110417517
40357	chr1	-	3762	17	NNC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	-81	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.275044584903	1	93	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCCTTGGATGTCAGT	NA	False	NA	NA	False	NA	NA	NA	14374933	14239178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253705_14254561_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344340_14353344_14353423_14372993_14373122_14374648_14374699_14374796
40358	chr2	+	2076	13	NNC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	-2	-450	intron_retention	FALSE	non_canonical	0	0	junction_5	287.902278945864	1	58	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATAGCTTCCAACTGGG	NA	False	NA	NA	False	NA	NA	NA	164675947	164681489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677638_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
40360	chr2	-	4031	8	ISM	ENSMUSG00000027438.15	ENSMUST00000028926.13	4412	11	25237	7	25161	-7	3prime_fragment	FALSE	canonical	1	1	junction_7	5.19418827505653	25	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGTAACCTTTTGACTGTT	NA	False	NA	NA	False	NA	NA	NA	148549150	148535911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_148539427_148540102_148540154_148540850_148540920_148542292_148542398_148544980_148545066_148545189_148545246_148548865_148548944_148549078
40361	chr13	-	2108	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	36	-157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.296184862358	1	79	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAAACATAGTTTGATG	NA	False	NA	NA	False	NA	NA	NA	9046050	9022672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9022961_9023156_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9042680_9042852_9045984
40362	chr17	+	2403	5	FSM	ENSMUSG00000057409.8	ENSMUST00000233158.2	3065	5	-12	674	-12	35	multi-exon	FALSE	canonical	3	42	junction_4	50.8527285403645	94	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAATTATAACTGTGGAA	1463	False	NA	NA	False	NA	NA	NA	21709247	21730061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21728248
40363	chrX	+	4612	6	ISM	ENSMUSG00000047045.18	ENSMUST00000112889.8	1742	7	14	5132	2	124	5prime_fragment	FALSE	canonical	3	60	junction_1	22.0599184042009	58	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAGAATTCAGGAGTCC	NA	False	NA	NA	False	NA	NA	NA	141464415	141621358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_141464553_141535035_141535086_141553962_141554030_141588985_141589065_141615496_141615598_141617180
40364	chr6	+	2160	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	-42	60	-24	-60	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	207	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTTCTTTTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	58617506	58669436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
40366	chr2	+	1781	3	ISM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	31	14	26	-14	intron_retention	FALSE	canonical	3	1606	junction_1	65	61	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTGTATAAATTGTTT	NA	False	NA	NA	False	NA	NA	NA	164611848	164614813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164612001_164612286_164612315_164613212
40367	chr13	-	1614	12	NIC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	43	-200	combination_of_known_splicesites	FALSE	canonical	1	14	junction_1	192.165390198346	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTTAAATGTTAACCATT	NA	False	NA	NA	False	NA	NA	NA	104953418	104767847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_104768247_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
40368	chr14	-	3471	1	NIC	ENSMUSG00000021928.10	novel	10092	4	NA	NA	18140	1055	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTTGAGTGTCCCTGAC	NA	False	NA	NA	False	NA	NA	NA	61579629	61576158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_61576200_61579600
40369	chr11	-	3068	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	16	2373	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.1068669888635	85	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATACTGGACTCGGGTGG	2906	False	NA	NA	False	NA	NA	NA	95805701	95754395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95755631_95756641_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
40370	chr11	+	2391	4	NIC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	20	-4	intron_retention	FALSE	canonical	3	210	junction_3	15.7691682300198	20	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGGCATGTTTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	71933300	71938192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_71934164_71935806_71936601_71937165_71937220_71937512
40371	chr8	-	3732	11	NIC	ENSMUSG00000036534.7	novel	3315	12	NA	NA	20	0	intron_retention	FALSE	canonical	3	212	junction_10	48.716013794234	247	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTGTCTCCTTTATC	NA	False	NA	NA	False	NA	NA	NA	96580130	96562551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_96564300_96567041_96567097_96568149_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
40372	chr14	-	2641	13	NIC	ENSMUSG00000071350.13	novel	2995	14	NA	NA	-3	-19	combination_of_known_junctions	FALSE	canonical	1	1	junction_12	33.2498955721	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATATAAAATTATACTAGA	NA	False	NA	NA	False	NA	NA	NA	59678329	59639478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59678035
40373	chr1	+	4639	8	NNC	ENSMUSG00000026782.16	novel	1671	10	NA	NA	5104	-467	intron_retention	FALSE	non_canonical	0	0	junction_7	60.3949585678156	1	145	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATGCTCTTTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	60483204	60519850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60503687_60503775_60509824_60509999_60515898_60519736_60519777
40375	chr9	-	1851	2	Intergenic	novelGene_1099	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	62	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	64980798	64978618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_64979443_64979771
40376	chr12	-	2472	20	NNC	ENSMUSG00000021038.18	novel	2524	20	NA	NA	10	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	23.1545452123103	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCCTCTTCCCCATC	NA	False	NA	NA	False	NA	NA	NA	87313017	87285652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299972_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
40377	chr2	-	1184	7	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-37	-1017	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6226.95485815945	3	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3699	False	NA	NA	False	NA	NA	NA	154734788	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714819_154715468_154715497_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
40378	chr8	+	1618	7	FSM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	-1	-95	-1	95	multi-exon	FALSE	canonical	3	964	junction_1	101.245027312731	701	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTGCTCTCCCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	84379304	84391418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
40379	chr3	-	1610	7	NIC	ENSMUSG00000059743.13	novel	1237	10	NA	NA	26	-19	intron_retention	FALSE	canonical	3	1662	junction_6	255.462108518835	6	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATTATTGTTCAACAT	NA	False	NA	NA	False	NA	NA	NA	89009240	89000913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89001151_89001537_89001837_89002166_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
40380	chr10	+	2204	8	NIC	ENSMUSG00000112241.2	novel	512	6	NA	NA	28	4447	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	535.279480691143	24	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACAGTGTTGTGTGGTGC	NA	False	NA	NA	False	NA	NA	NA	77442058	77481824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_77442176_77445645_77445775_77449813_77449886_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
40381	chr9	+	1667	4	FSM	ENSMUSG00000032068.15	ENSMUST00000114474.8	1689	4	0	22	0	-22	multi-exon	FALSE	canonical	3	38	junction_1	3.39934634239519	270	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGTTTTCCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	50405824	50416760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_50406047_50410394_50410600_50412372_50412429_50415576
40382	chr10	+	2287	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	2	5	-1	-5	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	1	101	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTGATTTCTTTGT	1293	False	NA	NA	False	NA	NA	NA	77417555	77434561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
40383	chr9	-	1445	10	NIC	ENSMUSG00000090626.10	novel	2054	13	NA	NA	2	5665	combination_of_known_junctions	FALSE	canonical	2	9	junction_5	82.404153077648	72	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGCATGCTTTTAATCCC	7878	False	NA	NA	False	NA	NA	NA	72399241	72379353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_72379924_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
40384	chr9	+	1934	8	NIC	ENSMUSG00000004100.13	novel	1834	9	NA	NA	2	-1	intron_retention	FALSE	canonical	3	785	junction_2	67.8166796652293	166	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799564	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20803044_20803127
40385	chr7	-	1799	17	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-355	26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	490.550038063142	2	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTCAGTACTTTTATCT	NA	False	NA	NA	False	NA	NA	NA	33928777	33901557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920283_33920352_33926542_33926663_33928352_33928422_33928707
40386	chr4	-	3054	21	NNC	ENSMUSG00000038172.15	novel	8831	20	NA	NA	-4	312	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	68.8371084517646	24	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAGACACTTTCAACAATG	NA	False	NA	NA	False	NA	NA	NA	83242430	83144343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_83145462_83148644_83148762_83150200_83150293_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
40387	chr8	-	1254	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	909.417822296333	47	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTCCTAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	108315063	108307011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307200_108307494_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
40388	chr12	+	2409	6	ISM	ENSMUSG00000021103.13	ENSMUST00000187549.7	3688	7	36	43646	36	-43646	5prime_fragment	FALSE	canonical	3	229	junction_3	43.2832531124914	16	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCTAGTATTTATTAATA	NA	False	NA	NA	False	NA	NA	NA	73170526	73236676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913
40390	chr19	-	3530	3	NIC	ENSMUSG00000024944.7	novel	2305	4	NA	NA	-63	-3	intron_retention	FALSE	canonical	3	728	junction_2	28	134	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTCCTGGCTGAGCCAT	NA	False	NA	NA	False	NA	NA	NA	6191233	6184418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6187671_6187759_6187871_6191066
40391	chr15	+	1492	14	NNC	ENSMUSG00000056851.15	novel	1215	14	NA	NA	21	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	185.424253662119	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTAAAAGATGGACTG	2168	False	NA	NA	False	NA	NA	NA	102379132	102407302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392639_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
40392	chr8	+	2778	14	FSM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	-40	0	-14	0	multi-exon	FALSE	canonical	3	13	junction_5	6.1711295754251	71	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCGTGTTTCCTATC	NA	False	NA	NA	False	NA	NA	NA	96429650	96441584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_96429806_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
40393	chr13	-	5995	24	FSM	ENSMUSG00000021709.15	ENSMUST00000188997.7	5084	24	-90	-821	-90	1	multi-exon	FALSE	canonical	3	24	junction_3	14.3384686218459	86	40	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGGTGTTGCCTTTATT	NA	False	NA	NA	False	NA	NA	NA	104056893	103955293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_103957315_103959318_103959394_103959821_103959915_103970005_103971537_103975814_103975999_103977661_103977777_103979964_103980142_103981321_103981496_103982011_103982134_103987252_103987353_103991326_103991397_103993502_103993619_103993918_103994049_103994358_103994432_103995883_103996029_103996578_103996654_103998787_103998852_104003156_104003214_104004550_104004641_104005327_104005407_104020650_104020769_104022648_104022847_104025745_104025794_104056753
40394	chr2	-	1747	9	FSM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	54	0	54	0	multi-exon	FALSE	canonical	3	114	junction_7	14.7394029729837	362	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	False	NA	NA	False	NA	NA	NA	104573169	104552128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104558427_104558556_104560528_104560920_104573026
40395	chr5	-	2188	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	19	-2	0	2	multi-exon	FALSE	canonical	3	116	junction_1	21.3386701313649	266	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTTATGTATATGAGT	NA	False	NA	NA	False	NA	NA	NA	25113448	25067743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
40396	chr12	+	1038	8	Antisense	novelGene_ENSMUSG00000001270.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGGCTGCTCGCTGCTCCC	7775	False	NA	NA	False	NA	NA	NA	111635827	111638731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_111635913_111636355_111636455_111636600_111636716_111637302_111637477_111637647_111637781_111637857_111638013_111638198_111638408_111638663
40397	chr1	-	2235	15	FSM	ENSMUSG00000057363.13	ENSMUST00000126008.8	4620	15	56	2329	-3	217	multi-exon	FALSE	canonical	3	170	junction_12	17.2527726254451	570	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTCAGGATTGATTTTG	NA	False	NA	NA	False	NA	NA	NA	43866904	43788454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
40399	chr7	-	2073	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	-178	3	-23	0	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	1244	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAAGTCCTCTGAGCTT	8456	False	NA	NA	False	NA	NA	NA	45480391	45474653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
40401	chr7	+	1835	15	NNC	ENSMUSG00000004056.16	novel	2865	15	NA	NA	-32	55	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_13	179.56672627097	5	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTTGTGTTCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	27291138	27337650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27336752_27336807_27337486
40403	chr11	-	1914	6	NNC	ENSMUSG00000004394.13	novel	2003	5	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	196.8	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	5369	False	NA	NA	False	NA	NA	NA	6224839	6220368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6221362_6221419_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
40404	chrX	-	1222	7	FSM	ENSMUSG00000025283.16	ENSMUST00000152463.8	1272	7	44	6	44	-6	multi-exon	FALSE	canonical	3	28	junction_4	540.496993516153	820	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGCCTGAGCATTTTT	NA	False	NA	NA	False	NA	NA	NA	153999401	153996133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998116_153998227_153998596_153998681_153998780_153998833_153999098
40405	chr17	-	1915	1	Intergenic	novelGene_15	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGAAGGACTGGTGGTCA	NA	False	NA	NA	False	NA	NA	NA	13413745	13411830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_13411800_13413700
40406	chr17	-	1975	1	NIC	ENSMUSG00000117042.2	novel	796	3	NA	NA	3039	-6050	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCAATCATAGCTCAGTAA	NA	False	NA	NA	False	NA	NA	NA	13717559	13715584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_13715600_13717600
40407	chr9	+	3640	19	FSM	ENSMUSG00000032374.15	ENSMUST00000070522.14	3649	19	8	1	8	-1	multi-exon	TRUE	canonical	3	58	junction_10	9.44264688775947	67	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTGTGCCTCTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	92424283	92490480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
40408	chr19	-	2951	25	NIC	ENSMUSG00000024960.10	novel	4558	30	NA	NA	195	-1353	combination_of_known_junctions	FALSE	canonical	3	20	junction_24	139.585174117215	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCGGGAGTTGCATAAGA	4612	False	NA	NA	False	NA	NA	NA	6946881	6933198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946752
40409	chr4	-	1938	9	NNC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	47.0372193055669	4	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	-10	True	NA	NA	False	NA	NA	NA	34687371	34663256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34663609_34663642_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
40410	chr1	+	3115	1	Antisense	novelGene_ENSMUSG00000005674.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGATCTCTGCCCTTC	NA	False	NA	NA	False	NA	NA	NA	171049439	171052554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_171049400_171052600
40412	chr5	+	1862	2	ISM	ENSMUSG00000029522.13	ENSMUST00000202822.2	371	3	4202	-21	4196	-5	3prime_fragment	FALSE	canonical	3	2118	junction_1	0	8	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTGGTGATTGTT	2880	False	NA	NA	False	NA	NA	NA	115608526	115612776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115610180_115612567
40413	chr4	-	1941	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	-21	12	-20	-12	multi-exon	FALSE	canonical	3	393	junction_8	23.5424491839793	674	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGGTACTTGAGAATCTGT	NA	False	NA	NA	False	NA	NA	NA	120682924	120614646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
40415	chr3	-	1253	4	NNC	ENSMUSG00000068739.14	novel	1801	3	NA	NA	5	-532	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1269.57744501424	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGTCCCTACGTGCA	NA	False	NA	NA	False	NA	NA	NA	108352509	108342244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108343283_108344824_108344896_108352312_108352351_108352403
40416	chr3	-	1920	2	ISM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	10345	5406	10319	2379	internal_fragment	FALSE	canonical	3	2549	junction_1	0	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATGCCAGCCCAGCATT	NA	False	NA	NA	False	NA	NA	NA	108342140	108339333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_108340478_108341364
40417	chr16	+	1825	10	NNC	ENSMUSG00000004460.18	novel	2513	11	NA	NA	0	-26	intron_retention	FALSE	non_canonical	0	0	junction_1	327.847186624772	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTATTTTACTGTTTAG	NA	False	NA	NA	False	NA	NA	NA	22676615	22691112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22676860_22681346_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
40419	chr3	+	3210	4	FSM	ENSMUSG00000056260.16	ENSMUST00000098750.5	3103	4	-104	-3	-61	0	multi-exon	FALSE	canonical	2	11	junction_1	11.8415464455544	125	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGGCTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	106629147	106643893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_106629423_106638978_106640459_106641673_106641956_106642720
40421	chr19	-	2698	11	FSM	ENSMUSG00000041488.17	ENSMUST00000069285.6	2810	11	110	2	18	-2	multi-exon	FALSE	canonical	3	392	junction_5	58.7316779940774	151	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTCTGGGGCCATCTCTC	7247	False	NA	NA	False	NA	NA	NA	11796196	11754850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_11756538_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
40424	chr7	-	3831	20	ISM	ENSMUSG00000035901.15	ENSMUST00000106722.2	4862	22	26713	11	-8637	-11	3prime_fragment	FALSE	canonical	3	123	junction_12	18.9176667785298	112	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAAACAAATCTCACTGG	1968	False	NA	NA	False	NA	NA	NA	109532894	109492997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_109494023_109495449_109495619_109496153_109496278_109497110_109497194_109497714_109497897_109498250_109498370_109498930_109499077_109500266_109500389_109504376_109504506_109504902_109504988_109507537_109507623_109511121_109511275_109513927_109514060_109515417_109515512_109516591_109516743_109517800_109518036_109518468_109518685_109520400_109520719_109526033_109526222_109532819
40425	chr10	+	4178	29	NNC	ENSMUSG00000039994.16	novel	4341	29	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	138.853812974477	1	205	19	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	6606	False	NA	NA	False	NA	NA	NA	128067948	128088808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077541_128077583_128078148_128078313_128078499_128078588_128079063_128079235_128080091_128080157_128080306_128080411_128080528_128080699_128081954_128082071_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086327_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
40426	chr7	+	1346	6	NNC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	702.694414379394	345	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTGATTGTGATGCCT	NA	False	NA	NA	False	NA	NA	NA	115692574	115704441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446_115703919_115704008
40427	chr9	-	3594	6	NIC	ENSMUSG00000032122.16	novel	2945	19	NA	NA	-360	1	intron_retention	FALSE	canonical	3	66	junction_2	7.5736384915046	6	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAACAAAGATTGGTGT	480	False	NA	NA	False	NA	NA	NA	37146810	37141806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380
40428	chr4	+	3327	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	38	0	-3	0	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	1	134	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	4	True	NA	NA	False	NA	NA	NA	21727763	21750546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
40429	chr8	+	1712	5	NIC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	218	-7490	intron_retention	FALSE	canonical	3	1509	junction_1	79.3095202355934	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTAGAGAGCTCATGCT	NA	False	NA	NA	False	NA	NA	NA	75836469	75843358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479
40430	chr11	+	1256	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	260	7	46	-7	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAAGTGCGAGACCCTG	NA	False	NA	NA	False	NA	NA	NA	95275777	95282595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
40431	chr14	-	2766	18	FSM	ENSMUSG00000033885.16	ENSMUST00000036682.9	2812	18	43	3	-1	-3	multi-exon	TRUE	canonical	3	68	junction_2	18.5091392369855	99	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTTGTAGCTTTGCTAG	NA	False	NA	NA	False	NA	NA	NA	14371519	14304658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
40432	chr12	-	2878	10	FSM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	40	0	24	0	multi-exon	TRUE	canonical	3	205	junction_5	27.4851250454756	254	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTACGTGGTCACAGTC	2447	False	NA	NA	False	NA	NA	NA	102671149	102534840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
40433	chr5	-	5726	11	FSM	ENSMUSG00000028995.15	ENSMUST00000115109.2	2195	11	2	-3533	2	-17	multi-exon	TRUE	canonical	3	50	junction_1	6.65131565932636	26	42	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACTAAAAGAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	24205015	24165945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24170357_24171131_24171430_24184485_24184646_24185484_24185573_24188147_24188265_24190742_24190839_24191135_24191252_24191731_24191813_24192882_24193063_24196733_24196836_24204938
40435	chr15	+	1683	5	NIC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	11	-3	intron_retention	FALSE	canonical	3	683	junction_1	74.1598779664584	910	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGACTTACTGTACTGTCCT	15	False	NA	NA	False	NA	NA	NA	10486114	10493767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
40436	chr7	-	2736	5	Fusion	ENSMUSG00000074166.8_ENSMUSG00000056383.11	novel	2071	5	NA	NA	-2	-18	intron_retention	TRUE	non_canonical	0	0	junction_4	36.698092593485	24	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAATTTTCATGATAAATT	NA	False	NA	NA	False	NA	NA	NA	41148834	41022364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_41024799_41025914_41025973_41026169_41026297_41042650_41042729_41148795
40437	chr3	-	2545	7	NIC	ENSMUSG00000027534.17	novel	2288	8	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	47.5558151602468	213	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGAGTGTTATCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	10505145	10482876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10484284_10485256_10485377_10485799_10485937_10499417_10499567_10500505_10500593_10502870_10503345_10504974
40439	chr9	+	3012	21	NNC	ENSMUSG00000032458.7	novel	3050	22	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	276.338488090241	1	159	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAGACTCTTGAGTTTC	NA	False	NA	NA	False	NA	NA	NA	98445780	98470429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98462048_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467042_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469671_98469813_98469883_98470097
40440	chr19	-	1814	3	NNC	ENSMUSG00000024640.10	novel	1572	3	NA	NA	1522	-354	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1780.5	159	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCATGACTTTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	15885554	15882847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884927_15885041
40441	chr15	+	1015	8	ISM	ENSMUSG00000058655.10	ENSMUST00000229400.2	1548	9	53	1315	53	3	5prime_fragment	FALSE	canonical	3	620	junction_1	97.4779933301536	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCATCTCTTTCTTCATGG	NA	False	NA	-41	True	NA	NA	NA	101982351	101997467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291
40442	chr7	-	3350	17	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	-133	intron_retention	FALSE	non_canonical	0	0	junction_5	43.4683343797528	1	106	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGGAGGGCCTAGACTAT	NA	False	NA	NA	False	NA	NA	NA	140697703	140681632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683907_140684494_140684581_140684640_140686675_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
40443	chr10	+	1630	13	ISM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	1034	-1	1034	1	3prime_fragment	FALSE	canonical	3	604	junction_7	35.2099851683518	32	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAGAGTTTCAAAATAT	NA	False	NA	NA	False	NA	NA	NA	127103289	127117820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
40444	chr8	-	3218	8	NNC	ENSMUSG00000014837.16	novel	3552	8	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	14.059639731791	6	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTGTGTGGCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	106016122	106007043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015694_106015798_106016035
40445	chrX	+	2388	14	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	3	-96	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	887.153802799991	1	125	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAAGTATTCCTGTTA	NA	False	NA	-15	True	NA	NA	NA	74139709	74153287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140893_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
40446	chr2	-	2818	2	NNC	ENSMUSG00000075415.14	novel	8469	14	NA	NA	22881	-1420	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTGTATTTTAAGTGA	9471	False	NA	NA	False	NA	NA	NA	30922575	30919626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30922262_30922392
40448	chr11	+	1885	10	NIC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	54	-10	intron_retention	FALSE	canonical	3	2261	junction_5	185.481621997344	6	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATGATAAACACTACAACT	4590	False	NA	NA	False	NA	NA	NA	106147033	106153936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
40449	chr1	+	2017	6	NIC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	19	479	intron_retention	FALSE	canonical	3	439	junction_1	54.5915744414832	12	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTGTTTGTTTTGTGA	5632	False	NA	NA	False	NA	NA	NA	34478950	34484074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_34479009_34479121_34479231_34481990_34482777_34482849_34483005_34483077_34483351_34483438
40450	chr15	+	1541	11	NNC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	111	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	607.526205196122	1	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTCTGCCTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	81791670	81799330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828_81799151_81799243
40451	chr11	-	2540	4	NNC	ENSMUSG00000015869.17	novel	912	4	NA	NA	1856	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	410.220266036024	577	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGGGTCTTCAGTCGG	NA	False	NA	NA	False	NA	NA	NA	116366709	116361685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116362382_116363002_116363150_116363769_116364604_116365846
40452	chr3	+	1648	12	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-182	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	447.973379521965	1	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGTTATTTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	34100598	34123489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112319_34112381_34115976_34116181_34118361_34118469_34123065
40453	chr8	+	1202	1	Antisense	novelGene_ENSMUSG00000052825.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTCTTCATCTAACATAA	NA	False	NA	NA	False	NA	NA	NA	52648802	52650004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_52648800_52650000
40454	chr2	-	2045	14	NIC	ENSMUSG00000027487.12	novel	1970	14	NA	NA	-2	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_13	25.3818180276853	393	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTCCTTGTCTACTTTT	5706	False	NA	NA	False	NA	NA	NA	154214613	154177303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214501
40455	chr2	-	3321	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	27	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	238.995289208572	1	174	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATACCCATGTGACCTAG	NA	False	NA	NA	False	NA	NA	NA	127673752	127643050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649928_127650881_127650924_127652494_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659357_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
40456	chrX	+	1513	6	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	11	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	888.626265648276	3	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAACCTGTTGCCTGACA	NA	False	NA	NA	False	NA	NA	NA	74557933	74578537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560815_74564987_74565036_74566865_74566947_74574690_74574830_74577513
40457	chr17	-	1808	9	ISM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	7	10	7	-3	intron_retention	FALSE	canonical	3	306	junction_8	20.2098367138381	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGACTTGCCTTGTCTGCG	NA	False	NA	NA	False	NA	NA	NA	24382733	24374816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949
40459	chr18	-	4448	18	ISM	ENSMUSG00000036501.8	ENSMUST00000040506.8	3344	21	9297	-1778	12	1778	3prime_fragment	FALSE	canonical	3	19	junction_15	7.00222406586023	58	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCATTGTAAATGTATGT	NA	False	NA	NA	False	NA	NA	NA	34630579	34573625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_34575819_34576953_34577056_34578329_34578494_34578584_34578669_34581078_34581175_34581420_34581505_34584260_34584491_34587086_34587169_34587706_34587837_34590716_34590928_34595113_34595262_34596013_34596063_34598208_34598274_34606602_34606739_34620031_34620193_34627209_34627352_34627651_34627830_34630386
40460	chr7	-	1594	13	NNC	ENSMUSG00000006763.15	novel	1849	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	181.075241420675	69	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATCGGGATGATGGT	NA	False	NA	NA	False	NA	NA	NA	46360085	46338727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351606_46351713_46351825_46351917_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
40461	chr4	-	3757	6	FSM	ENSMUSG00000028546.18	ENSMUST00000106603.9	3761	6	9	-5	9	5	multi-exon	FALSE	canonical	3	15	junction_1	6.48074069840786	34	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCCCAAATTTTTAAATG	NA	False	NA	NA	False	NA	NA	NA	110209097	110060928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
40462	chr14	+	2219	5	ISM	ENSMUSG00000025290.18	ENSMUST00000223999.2	525	7	-10	1	2	-1	intron_retention	FALSE	canonical	3	88	junction_4	5211.03993340101	14	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGCTCCTACACGTCT	NA	False	NA	NA	False	NA	NA	NA	24540787	24545912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24544119
40463	chr14	+	1789	11	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	-3	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	532.769556187288	5	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCCAGCTAGGTATGTAA	NA	False	NA	NA	False	NA	NA	NA	45567298	45587169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572402_45578775_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
40464	chr2	+	1310	3	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	3018	456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	374	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAAATTTTAAAAGAATTC	NA	False	NA	NA	False	NA	NA	NA	174855129	174859861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174855276_174858430_174858566_174858832
40466	chr6	-	2409	1	Intergenic	novelGene_4277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTTCTGGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	149222667	149220258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_149220300_149222700
40467	chr17	-	2952	8	ISM	ENSMUSG00000024037.14	ENSMUST00000236665.2	1897	11	7239	8	-1491	-4	3prime_fragment	FALSE	canonical	3	400	junction_7	22.1608222053318	3	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATAGCTTTCTGGAATG	5507	False	NA	NA	False	NA	NA	NA	31724044	31715103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483
40468	chr4	-	2701	7	NNC	ENSMUSG00000028706.15	novel	2439	6	NA	NA	69	-12	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	54.5122310434395	2	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTATGGTCAACTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	115911004	115890213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115907838_115908345_115910880
40469	chr4	+	2280	15	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-2	133	intron_retention	FALSE	non_canonical	0	0	junction_14	251.319791809364	1	67	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTCTTTTATTCCTACT	9979	False	NA	NA	False	NA	NA	NA	155954021	155973323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972567_155972640_155972784_155972852_155972983_155973080
40470	chr11	-	2069	4	NIC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	31	-1	intron_retention	FALSE	canonical	3	479	junction_3	42.6249796350554	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATCTTTGGTCTTAA	1662	False	NA	NA	False	NA	NA	NA	78402967	78397881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_78398632_78399144_78399522_78400550_78401248_78402722
40471	chr1	-	1032	4	FSM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	75	1734	-10	131	multi-exon	FALSE	canonical	3	2337	junction_3	156.5907617539	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCTTCTGGTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	180641122	180630130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035
40472	chr17	+	1829	6	NIC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	-63	-5	intron_retention	FALSE	canonical	3	1011	junction_1	75.6782663649214	17	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGAAAACCTGCCTTATG	7319	False	NA	NA	False	NA	NA	NA	36198764	36203553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36198890_36198975_36199095_36199246_36200253_36200330_36200493_36201806_36201981_36203310
40473	chr13	-	1674	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	237.004219371723	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATTTTCTTCCTTTAGA	NA	False	NA	NA	False	NA	NA	NA	34314327	34311125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311760_34311855_34312515_34312861_34312966_34313228_34313338_34314159
40474	chr1	+	2665	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	56	119	0	-118	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	12	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACACTTTGTGAATATAT	NA	False	NA	NA	False	NA	NA	NA	55170445	55193939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
40475	chr10	+	1986	9	ISM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	-97	34075	4	-5418	5prime_fragment	FALSE	canonical	3	265	junction_7	22.4318412084251	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTGTTATCACATTGTT	NA	False	NA	NA	False	NA	NA	NA	63079592	63119578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959
40476	chr3	+	1962	10	NIC	ENSMUSG00000027900.16	novel	3271	9	NA	NA	-12	-387	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	49.8998997994986	46	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACATTGTTCAGTAGTGT	NA	False	NA	NA	False	NA	NA	NA	106455167	106481774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_106455237_106457814_106457992_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
40477	chr3	-	3074	9	FSM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	0	9	0	-8	multi-exon	FALSE	canonical	3	16	junction_1	5.49431524395898	87	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGTACATGTCCAACT	NA	False	NA	NA	False	NA	NA	NA	137687306	137636776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_137638951_137641342_137641431_137643497_137643584_137644897_137644961_137646621_137646670_137655407_137655539_137667202_137667337_137671641_137671765_137687079
40478	chr11	-	1851	12	NNC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	89.4389306401278	180	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	264	False	NA	NA	False	NA	NA	NA	61652866	61620479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652311_61652401_61652779
40479	chr4	+	2686	17	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	12	3610	12	451	5prime_fragment	FALSE	canonical	3	46	junction_1	14.3013056659174	2	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTGAGAGTTCTCCATT	-1	True	NA	NA	False	NA	NA	NA	49632077	49653277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064
40480	chr18	-	1952	7	Antisense	novelGene_ENSMUSG00000024581.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACCCCTTTTTGTAAGT	NA	False	NA	NA	False	NA	NA	NA	63130171	63118120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_63119360_63119481_63119549_63120024_63120094_63124869_63124949_63127378_63127461_63128031_63128162_63129885
40481	chr4	-	4378	12	ISM	ENSMUSG00000066043.14	ENSMUST00000084170.12	4483	13	9325	1	9320	-1	3prime_fragment	FALSE	canonical	3	61	junction_10	12.3167560395927	60	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAAACTGAATTTGTGT	8492	False	NA	NA	False	NA	NA	NA	132140432	132083241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132114202_132114377_132140380
40482	chr4	+	1646	11	NIC	ENSMUSG00000074088.7	novel	1584	10	NA	NA	0	-15	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	443.970956257276	1405	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATAACCTTTTTACAAA	NA	False	NA	NA	False	NA	NA	NA	130253924	130283804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130267134_130267212_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
40483	chr7	+	1537	4	NIC	ENSMUSG00000006333.15	novel	1347	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	206	junction_3	6046.37086744327	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1318	False	NA	NA	False	NA	NA	NA	3707045	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3707768_3708731_3708919_3709006
40484	chr9	-	2621	9	FSM	ENSMUSG00000031938.16	ENSMUST00000178977.9	2650	9	29	0	-1	0	multi-exon	FALSE	canonical	3	15	junction_1	3.64005494464026	110	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	15217434	15194634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662_15212810_15217332
40486	chr14	-	1752	5	NIC	ENSMUSG00000037722.9	novel	2788	6	NA	NA	-30	-835	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	515.322896347523	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTTTTCCCCAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	45626280	45614625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_45615944_45618393_45618456_45619012_45619141_45622037_45622206_45626204
40487	chr2	-	2831	11	NNC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	-28	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	58.2722060677301	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGGGGATGTTTTTG	5026	False	NA	NA	False	NA	NA	NA	150480063	150460030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479910_150479987
40488	chr4	+	4330	7	FSM	ENSMUSG00000018983.10	ENSMUST00000061721.6	4739	7	404	5	404	-5	multi-exon	FALSE	canonical	1	25	junction_4	12.2395079784914	64	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAACTTTGTCTTGGTGTG	1460	False	NA	NA	False	NA	NA	NA	135900108	135923363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135900350_135905746_135905853_135907668_135907889_135908596_135908756_135911733_135911849_135914109_135914303_135920067
40489	chr10	+	1690	10	ISM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	6	5015	6	-701	5prime_fragment	FALSE	canonical	3	135	junction_2	34.1579483004873	1	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCCAATCAGGTCAGACT	9099	False	NA	NA	False	NA	NA	NA	41352315	41358011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896
40491	chr14	+	1513	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	-63	25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	669.287535783803	33	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGATTGTGTGTTCTTT	1775	False	NA	NA	False	NA	NA	NA	26359317	26377994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050_26377421_26377564
40492	chr17	+	1547	6	NNC	ENSMUSG00000046711.17	novel	2001	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2255.93217983165	2	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	27775625	27782643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27782001_27782089
40493	chr11	-	2012	14	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	1158	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	399.628777446412	1	73	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTTCACAGCTATGCCA	NA	False	NA	NA	False	NA	NA	NA	35724130	35699222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708181_35708356_35710700_35710798_35711922_35712053_35715222_35715344_35716813_35716936_35717299_35717405_35718184_35718294_35719451_35719641_35723998
40494	chrX	+	1129	4	NIC	ENSMUSG00000008682.14	novel	600	5	NA	NA	-22	-4	intron_retention	FALSE	canonical	3	7516	junction_1	1024.43773196162	13	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTTTTTGTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	73314539	73316737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73314631_73315265_73315924_73316277_73316441_73316520
40495	chr9	+	3684	13	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	2	-15	intron_retention	FALSE	canonical	3	271	junction_2	36.9334047833244	3	114	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTCTCCCCTAAGTTGG	NA	False	NA	NA	False	NA	NA	NA	107828167	107849454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
40496	chr1	+	2805	18	NNC	ENSMUSG00000026074.16	novel	4082	31	NA	NA	10	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	40.2739752145821	1	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCAGCTGGTGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	40039063	40064102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_40039135_40039690_40039910_40042922_40043148_40043966_40044074_40045830_40045983_40046592_40046702_40048847_40049024_40049716_40049838_40050809_40051002_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
40497	chr7	+	3014	14	NNC	ENSMUSG00000038943.17	novel	3026	14	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	368.992487215257	1	192	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACACTGTTTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	79944230	79966003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954341_79954436_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962992_79964861
40498	chr7	-	2153	4	NIC	ENSMUSG00000003873.12	novel	867	6	NA	NA	15	-12	intron_retention	FALSE	canonical	3	105	junction_3	1463.62343365893	68	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGATTGTATGGTCC	9997	False	NA	NA	False	NA	NA	NA	45116240	45111132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45112928_45114612_45114749_45115400_45115548_45116165
40499	chr17	+	1561	11	FSM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	49	-3	32	0	multi-exon	FALSE	canonical	3	52	junction_1	144.013228559046	1108	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	6	True	NA	NA	False	NA	NA	NA	35069415	35075348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
40500	chr13	+	3868	11	NNC	ENSMUSG00000062822.9	novel	3406	14	NA	NA	76	-6948	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	60.4318624568199	2	136	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGGTGTGTTTGTATGTA	NA	False	NA	NA	False	NA	NA	NA	119599395	119615705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119599656_119601100_119601227_119601815_119602486_119602609_119602841_119603402_119603493_119606050_119606698_119608702_119608777_119610368_119610493_119611370_119611461_119612472_119612543_119614219
40501	chr10	-	1865	9	NIC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	6	-5	intron_retention	FALSE	canonical	3	350	junction_8	61.8120892301821	180	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCAAACCACTGATGTTG	5787	False	NA	NA	False	NA	NA	NA	62859667	62851214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62854005_62854538_62854678_62855171_62855307_62859498
40502	chr12	+	2944	9	NNC	ENSMUSG00000040877.17	novel	4356	8	NA	NA	2574	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	29.2999040100817	138	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCGTGGTCAT	7469	False	NA	NA	False	NA	NA	NA	108862816	108994374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_108862986_108863370_108863469_108863834_108864652_108865464_108865531_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
40504	chr19	+	2262	4	FSM	ENSMUSG00000018820.14	ENSMUST00000164460.8	876	4	-409	-977	-409	-226	multi-exon	FALSE	canonical	3	143	junction_3	2.49443825784929	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCCAGTCATGGGTGT	2747	False	NA	NA	False	NA	NA	NA	42173364	42179930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_42174389_42177635_42177683_42177960_42178043_42178821
40505	chr1	-	2081	8	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	384.910697302581	5	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624072	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601190_177612477_177612565_177623777
40506	chr3	+	2850	4	NNC	ENSMUSG00000105961.2	novel	1027	3	NA	NA	9084	6598	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.942809041582063	46	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATTTCATTGGTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	108143186	108154161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108143301_108145985_108146078_108146699_108149297_108154114
40507	chr8	+	1779	5	NNC	ENSMUSG00000031562.17	novel	2096	6	NA	NA	1494	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	177.602787140292	1	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACGTGTTTGCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	48564739	48594697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_48564826_48565002_48565139_48575074_48575195_48590292_48590410_48593377
40509	chr9	+	3408	6	FSM	ENSMUSG00000032425.16	ENSMUST00000162827.8	3472	6	56	8	-9	-8	multi-exon	FALSE	canonical	3	7	junction_1	5.88557558782486	78	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATCCACTTCAGTTTGA	NA	False	NA	NA	False	NA	NA	NA	88430128	88453106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_88430562_88434768_88434915_88436428_88436598_88449211_88449339_88449560_88449654_88450666
40510	chr8	+	1805	5	ISM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	64	0	64	0	intron_retention	FALSE	canonical	3	20484	junction_1	2022.99505684023	49	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	123829152	123831983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636
40511	chr3	-	1811	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-3	33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	822.986050914595	2	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAACCTTGTCTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	108352475	108333894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338925_108340327_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
40512	chr6	+	3031	3	FSM	ENSMUSG00000085412.8	ENSMUST00000155758.2	408	3	-20	-2603	-11	1107	multi-exon	FALSE	canonical	3	43	junction_2	88.5	49	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGGAGAAGATGTCCCA	812	False	NA	NA	False	NA	NA	NA	52079962	52091771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_52080017_52083750_52083877_52088920
40513	chr17	-	5421	31	NNC	ENSMUSG00000024163.18	novel	5418	33	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	14.0296907386522	80	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTTTTGTCTTGAAACT	NA	False	NA	NA	False	NA	NA	NA	25155912	25116510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25118044_25118118_25118269_25118369_25118550_25118648_25118688_25118809_25118924_25119135_25119308_25119471_25119621_25119761_25119830_25119912_25119994_25120079_25120200_25120313_25120504_25120578_25120762_25121251_25121418_25121977_25122137_25122262_25122359_25122898_25123026_25123622_25123794_25123880_25123938_25124141_25124273_25125120_25125203_25125782_25125936_25126302_25126368_25131717_25131841_25132503_25132607_25133432_25133680_25137061_25137114_25139445_25139470_25142789_25142882_25143120_25143192_25146802_25146924_25155510
40514	chr16	-	2932	1	Antisense	novelGene_ENSMUSG00000116667.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTAACAACAGCCACAGT	NA	False	NA	NA	False	NA	NA	NA	94903856	94900924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_94900900_94903900
40515	chrX	-	2975	1	FSM	ENSMUSG00000065642.3	ENSMUST00000083708.3	131	1	-2139	-705	-2139	705	mono-exon	FALSE	NA	NA	NA	NA	NA	65	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCAAGACGGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	36348834	36345859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36345900_36348800
40516	chr13	+	2426	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	310	2	9	-2	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	385	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGTTTGCATTCTTGC	4798	False	NA	NA	False	NA	NA	NA	38221280	38245407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
40518	chr1	-	2562	8	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	-1404	-89	intron_retention	FALSE	canonical	3	121	junction_3	9.8685234509546	18	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAAATGGAGTTGCATGT	9835	False	NA	NA	False	NA	NA	NA	150259629	150238373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150258160_150258808
40519	chr6	+	1842	11	NNC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	197.5318708462	1	54	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATTAGTGTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	72575584	72584464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72575780_72577955_72578129_72578559_72578701_72579637_72579840_72580636_72580832_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
40520	chr8	-	3512	7	NNC	ENSMUSG00000031482.10	novel	3430	7	NA	NA	302	-45	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	86.8192566965033	64	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAACTGTAAGCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	22888258	22865611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22887973
40521	chr6	-	4128	12	FSM	ENSMUSG00000038058.15	ENSMUST00000060655.15	4315	12	181	6	181	-6	multi-exon	FALSE	canonical	2	6	junction_10	5.88175495258975	40	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTTCACTGTTTCTAATG	NA	False	NA	NA	False	NA	NA	NA	54949416	54900939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_54901995_54905019_54905104_54907160_54907245_54910544_54910629_54911379_54911464_54914338_54914423_54915122_54915207_54916288_54916373_54920115_54921941_54924933_54925109_54926416_54926739_54949253
40522	chr11	-	3207	11	ISM	ENSMUSG00000020387.16	ENSMUST00000109091.2	6099	13	8345	2718	8074	-2718	3prime_fragment	FALSE	canonical	2	12	junction_7	2.45153013442625	46	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCCGTGTACAGGTGGA	NA	False	NA	NA	False	NA	NA	NA	51739878	51707004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51708528_51709323_51709456_51711905_51712024_51715769_51716235_51717385_51717503_51719092_51719261_51721242_51721455_51722079_51722241_51726399_51726558_51737432_51737528_51739820
40523	chr16	-	2290	3	ISM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	17016	5	17003	-5	3prime_fragment	FALSE	canonical	3	294	junction_2	14	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGAGGTGGTTATACTC	NA	False	NA	NA	False	NA	NA	NA	37343135	37330156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_37332182_37336080_37336323_37343112
40524	chr17	-	2058	17	NNC	ENSMUSG00000005823.10	novel	2405	17	NA	NA	304	30	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_16	50.81338406365	46	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCGGAGCCCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	57554359	57541913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554265
40525	chr5	-	1120	5	NNC	ENSMUSG00000032959.13	novel	779	5	NA	NA	-2	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1352.16576276727	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCGGGTATTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	117425635	117420717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117420978_117421043_117421531_117423785_117423887_117424199_117424310_117425473
40526	chr4	-	3374	4	NNC	ENSMUSG00000078584.10	novel	7151	5	NA	NA	5843	-1110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	176.776695296637	1	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGTGTCTGCAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	119084032	119078148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119079104_119079306_119080694_119082727_119083725_119083997
40527	chr15	+	2407	10	NNC	ENSMUSG00000037353.10	novel	2502	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	46.1326589546085	107	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2427	False	NA	NA	False	NA	NA	NA	100366995	100377045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100367020_100367565_100367718_100367835_100367940_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
40529	chr13	-	1396	10	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	27	-88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	964.933132718161	4	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCTTTCTATCCCTGAA	NA	False	NA	NA	False	NA	NA	NA	97334838	97312926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318517_97320184_97320269_97330646_97330776_97334533
40530	chr8	-	1864	3	Antisense	novelGene_ENSMUSG00000056820.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAGCTCTTGGGCTACCT	NA	False	NA	NA	False	NA	NA	NA	125760931	125751336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_125751375_125755504_125755635_125759235
40532	chr5	-	2106	1	Antisense	novelGene_ENSMUSG00000048439.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAAACATCCACTGTCCC	7156	False	NA	NA	False	NA	NA	NA	24376458	24374352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_24374400_24376500
40533	chr16	-	3129	8	NNC	ENSMUSG00000004462.8	novel	2980	8	NA	NA	1	-435	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	50.1853706628877	1	64	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCACATAGAGCATTATTA	NA	False	NA	NA	False	NA	NA	NA	22676289	22636597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22637279_22640831_22641330_22641452_22641640_22642116_22642198_22644515_22644883_22652632_22652784_22660478_22660858_22675504
40534	chr4	-	2831	25	Intergenic	novelGene_2161	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	121	12	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCGGCTGCCCGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	148666847	148642890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148643034_148644002_148644141_148645468_148645596_148646766_148646868_148647166_148647332_148647475_148647588_148648296_148648372_148648564_148648679_148649054_148649199_148649658_148649851_148650734_148650887_148652818_148652972_148653106_148653155_148654839_148654954_148657373_148657480_148657559_148657646_148657733_148657842_148660265_148660361_148660605_148660682_148662876_148662961_148663835_148663914_148664814_148664985_148665552_148665619_148666212_148666301_148666751
40535	chr17	-	1230	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	19	23	19	-23	multi-exon	FALSE	canonical	3	95	junction_1	3.5	527	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGTATGAAATTTTCC	NA	False	NA	NA	False	NA	NA	NA	46464460	46458335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46459211_46463704_46463968_46464368
40536	chr9	+	4198	24	NNC	ENSMUSG00000032267.9	novel	4133	24	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	173.427398013845	1	220	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTGGTATGTAGCATGA	NA	False	NA	NA	False	NA	NA	NA	48896691	48953804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948478_48948557_48949067_48949192_48950281_48950478_48952673
40537	chr11	-	1875	10	NIC	ENSMUSG00000020863.16	novel	2050	11	NA	NA	-5	-32	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	85.7217721598324	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAATAAAGTATCTCTGA	NA	False	NA	NA	False	NA	NA	NA	94212789	94181996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94200450_94200518_94212515
40538	chr2	+	1890	7	NNC	ENSMUSG00000026817.15	novel	2085	7	NA	NA	41	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	112.542831352729	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTTATAAGAAGTGAGTG	NA	False	NA	NA	False	NA	NA	NA	32518442	32525060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652_32523823_32523907
40539	chr11	+	3070	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	25	-1093	25	1093	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	704	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTAAGGGTCTCACT	2496	False	NA	NA	False	NA	NA	NA	17161942	17184889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
40540	chr7	-	1361	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9768.86061677614	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTAAGGGGGAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	126398343	126394419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394679_126394791_126394985_126395121_126395297_126395388_126395445_126395766_126395928_126396035_126396081_126396508_126396721_126396815_126396949_126398216
40541	chr11	+	3700	5	FSM	ENSMUSG00000025577.8	ENSMUST00000026662.8	3807	5	107	0	107	0	multi-exon	TRUE	canonical	3	204	junction_1	10.9630059746403	162	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGCTGTTCTCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	118913894	118922096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_118914007_118914083_118914128_118915000_118915067_118917275_118917382_118918724
40542	chrX	-	1357	3	NNC	ENSMUSG00000079316.11	novel	1447	3	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	280.5	1941	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGCAATGCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	165262653	165240249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_165241340_165245310_165245339_165262414
40543	chr14	-	1452	7	NIC	ENSMUSG00000067995.5	novel	1467	8	NA	NA	-61	6	combination_of_known_splicesites	FALSE	canonical	1	9	junction_3	198.810979464303	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAACTGTTATCACTGGC	NA	False	NA	NA	False	NA	NA	NA	76248366	76134370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_76135094_76144222_76144367_76155073_76155174_76232860_76233006_76234348_76234368_76245144_76245219_76248119
40544	chr9	+	2567	12	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	166	-7	intron_retention	FALSE	non_canonical	0	0	junction_11	370.64177087054	1	87	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTAATGAGTTTGGGTTG	NA	False	NA	NA	False	NA	NA	NA	59446988	59472385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59470334_59470506_59470598_59471165_59471248_59472103
40545	chr4	-	1520	13	NNC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-1	17	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	262.178731974964	536	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCCCTGACTCAATTG	19	True	NA	NA	False	NA	NA	NA	48279559	48194472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48276741_48276787_48279383
40546	chr11	+	3054	14	NIC	ENSMUSG00000020818.17	novel	2952	14	NA	NA	3	-25	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	8.80424857096892	127	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTACATTAAGATACACA	NA	False	NA	NA	False	NA	NA	NA	116744590	116766258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116744730_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
40547	chr9	+	4672	8	FSM	ENSMUSG00000032549.8	ENSMUST00000035155.8	5007	8	314	21	314	-21	multi-exon	FALSE	canonical	3	16	junction_5	2.35606035749581	46	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCTAATTCTCGACACAA	547	False	NA	NA	False	NA	NA	NA	102989319	103062454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_102989426_103017580_103017640_103038018_103038073_103038262_103038369_103039740_103039853_103041008_103041103_103044304_103044372_103058380
40548	chr5	+	2104	6	NIC	ENSMUSG00000029464.11	novel	2198	7	NA	NA	49	-8	intron_retention	FALSE	canonical	3	424	junction_4	33.4998507459362	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAAACTGTGTTTGAGG	8164	False	NA	NA	False	NA	NA	NA	122510638	122520957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122520240_122520323
40549	chr15	+	2510	9	NIC	ENSMUSG00000022561.14	novel	2237	12	NA	NA	-11	-3	intron_retention	FALSE	canonical	3	245	junction_1	20.7270204081532	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACCTTGGGATCCTGGC	4984	False	NA	NA	False	NA	NA	NA	76215701	76219095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217574_76217663_76218091_76218213_76218405_76218489_76218661_76218781
40550	chr18	+	2345	11	NNC	ENSMUSG00000019143.16	novel	3336	13	NA	NA	-6	177	intron_retention	FALSE	canonical	0	0	junction_9	39.7699635403403	6	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGACCTGAGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	36916315	36924924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922468_36923525_36923669_36924122
40551	chr10	-	1688	14	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	362	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	990.854451662149	1	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTACAAGTTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	116898918	116886964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890954_116891141_116891944_116892074_116893105_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897309_116897403_116897487_116897929_116898042_116898721_116898788_116898880
40555	chr13	-	2136	17	NNC	ENSMUSG00000021646.10	novel	2123	17	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	82.1161287065458	498	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTAGGGTTGTTGAGAT	661	False	NA	NA	False	NA	NA	NA	100152155	100085039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100085465_100088663_100088750_100090643_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127715_100127822_100130074_100130160_100136757_100136825_100151893
40556	chr3	-	1189	4	NNC	ENSMUSG00000004896.17	novel	3254	5	NA	NA	1841	1103	intron_retention	FALSE	non_canonical	0	0	junction_1	0	114	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATCCTTCTCCTTCGCTC	1574	False	NA	NA	False	NA	NA	NA	87830741	87828804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_87829532_87829692_87829796_87830238_87830370_87830513
40557	chr14	-	2088	10	Intergenic	novelGene_649	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCGCTCCGGAGCCGCCA	NA	False	NA	NA	False	NA	NA	NA	122258442	122116041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_122116187_122142534_122142656_122144692_122144823_122145622_122145733_122211020_122211143_122220677_122220728_122231636_122231881_122246200_122246322_122257357_122258265_122258304
40558	chr3	+	2186	13	Antisense	novelGene_ENSMUSG00000015748.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGACTACGGAAGGCGGG	5233	False	NA	NA	False	NA	NA	NA	95741409	95763180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_95741515_95742665_95743056_95743725_95743872_95747983_95748062_95751497_95751662_95752233_95752543_95754685_95754908_95755076_95755163_95756228_95756373_95757005_95757102_95758873_95759009_95760758_95760947_95763057
40559	chr1	+	2182	2	Antisense	novelGene_ENSMUSG00000041303.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGATCCTACAGTAAGAT	NA	False	NA	NA	False	NA	NA	NA	54435173	54437701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_54435786_54436131
40560	chr7	-	912	2	Antisense	novelGene_ENSMUSG00000063902.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	3	1625	junction_1	0	18	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACCTCGACCAGGAGGTG	NA	False	NA	NA	False	NA	NA	NA	83406978	83406006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83406472_83406531
40561	chr4	-	1949	5	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	24	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	763.249426793103	1	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCACAAGTGAGCCTGAAG	NA	False	NA	NA	False	NA	NA	NA	137084986	137047018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048504_137056023_137056222_137056325_137056423_137063301_137063441_137084956
40562	chrX	+	4342	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	157	3	20	-3	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	1	243	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCACCCTACTTAGAAAT	NA	False	NA	NA	False	NA	NA	NA	132960102	132987565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
40563	chr8	-	1564	10	NIC	ENSMUSG00000038000.11	novel	3154	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	179	junction_6	14.4179243724565	687	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGAGAGAGATTCAGGGG	NA	False	NA	NA	False	NA	NA	NA	106427734	106424788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
40564	chr8	-	3268	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	9	1656	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	512	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATGTAGTTTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	14140292	14075904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
40565	chr3	-	1571	7	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	-34	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	285.373439548953	10	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATAAAATCCTTAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	131065707	131027093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027937_131029191_131029252_131036183_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
40566	chr11	+	3888	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	365	30	365	-30	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	217	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCAATAAAGGTATTT	NA	False	NA	NA	False	NA	NA	NA	60308452	60336073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
40567	chr16	-	2501	12	Antisense	novelGene_ENSMUSG00000005262.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACCGCGAGAGGCTCGC	NA	False	NA	NA	False	NA	NA	NA	18648094	18631068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18631167_18633578_18633685_18634076_18634112_18636652_18636774_18639787_18639920_18641972_18642044_18643735_18643807_18644502_18644569_18645004_18645053_18645767_18645855_18646383_18647865_18647909
40568	chr16	+	2565	10	ISM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	-6	540	-6	-52	intron_retention	FALSE	canonical	3	136	junction_3	21.4740727964943	12	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGACCTCTTGACTAATA	NA	False	NA	NA	False	NA	NA	NA	8288645	8308008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522
40569	chr9	-	3880	10	NNC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	-9	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	75.1720659964381	2	171	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTATGGGATCCTTTC	NA	False	NA	NA	False	NA	NA	NA	57744062	57697636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57703860_57704017_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
40570	chr4	+	2566	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	-8814	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	61.363443695919	169	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	115705414	115736445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115705560_115709112_115709220_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
40571	chr11	-	2390	14	ISM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	9	8563	9	-2290	5prime_fragment	FALSE	canonical	3	452	junction_4	72.4485534666379	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATTGTATCTGTTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	95896757	95856551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
40572	chr15	+	3372	2	FSM	ENSMUSG00000037075.8	ENSMUST00000036904.7	4348	2	149	827	149	-827	multi-exon	FALSE	canonical	3	140	junction_1	0	62	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAGGGCCAAAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	58761226	58773412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_58761344_58770157
40574	chr9	-	1642	14	ISM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	193	11989	2	-1740	5prime_fragment	FALSE	canonical	3	273	junction_11	344.699783621055	3	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	64080193	64056414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
40575	chrX	+	1681	3	NIC	ENSMUSG00000079435.10	novel	483	5	NA	NA	-3	0	intron_retention	FALSE	canonical	3	10431	junction_2	1717	55	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAAGTTTTTCTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	133486434	133488805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_133486933_133487259_133488323_133488685
40576	chr19	+	1669	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-19	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2845.56922639781	4	72	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTACTGTTTGTCTTGT	4156	False	NA	NA	False	NA	NA	NA	41900457	41907097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904319_41905089_41905263_41906044
40577	chr9	+	1642	4	NIC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-40	-6	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	695.560365620571	2	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAATTTCCTGTATTCTC	NA	False	NA	NA	False	NA	NA	NA	108183597	108215127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108183753_108192506_108192582_108212249_108212381_108213846
40578	chr4	+	977	4	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	0	-156	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	189.78291692235	17	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAAGACGAAGGCTTTCA	NA	False	NA	NA	False	NA	NA	NA	98615029	98626197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615078_98615631_98615708_98621379_98621880_98625844
40580	chr7	+	2412	16	FSM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	84	11	-7	-11	multi-exon	FALSE	canonical	3	379	junction_1	68.5528506579656	266	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTGCATCACACTGAAT	NA	False	NA	NA	False	NA	NA	NA	49428177	49508002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242_49498294_49498484_49498573_49507114
40581	chr16	+	2401	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233566.2	2415	4	13	1	8	-1	multi-exon	FALSE	canonical	3	18	junction_2	163.242832069963	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGGTACTGTGGAAAGC	NA	False	NA	NA	False	NA	NA	NA	95946625	95959045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_95946779_95953012_95953179_95955280_95955396_95957078
40582	chr2	+	5377	1	Intergenic	novelGene_2803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCATATCCCAACTGAACA	NA	False	NA	NA	False	NA	NA	NA	168847939	168853316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168847900_168853300
40583	chr13	-	2328	14	FSM	ENSMUSG00000021461.18	ENSMUST00000099444.10	2288	14	-40	0	-9	0	multi-exon	FALSE	canonical	3	11	junction_13	30.2197082916227	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGTCCTTGTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	63579548	63459948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63579263
40585	chr9	-	1326	2	Genic_Genomic	ENSMUSG00000058922.8	novel	960	1	NA	NA	-61	350	multi-exon	FALSE	canonical	0	0	junction_1	0	2	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	123519318	123517947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_123518267_123518311
40586	chr11	-	1810	6	NIC	ENSMUSG00000018761.15	novel	1321	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	628	junction_2	17.9844377170931	53	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6816	False	NA	NA	False	NA	NA	NA	69553413	69547522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69549525_69549636_69549703_69553294
40588	chrX_GL456233v2_random	-	1988	5	Intergenic	novelGene_4788	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_4	155.365697629818	5	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTGTGCATGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	134051	105840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_GL456233v2_random_-_107510_109039_109133_116592_116661_119836_119928_133984
40589	chr11	+	5100	23	NNC	ENSMUSG00000020532.19	novel	9026	54	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	56.2368993008612	17	67	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACCGTTTGTCATTTCAA	NA	False	NA	NA	False	NA	NA	NA	84070685	84292477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84070753_84086263_84086514_84104983_84105117_84106659_84106799_84113967_84114000_84206668_84206804_84211351_84211508_84213308_84213456_84229139_84229410_84232752_84232851_84236791_84236913_84237530_84237642_84254489_84254634_84255152_84255274_84259496_84259594_84262326_84262424_84263404_84263541_84271327_84271506_84273257_84273371_84282335_84282491_84283041_84283213_84288884_84289022_84290385
40590	SIRV3	+	1978	3	FSM	SIRV3A	SIRV303	2018	3	18	22	18	-22	multi-exon	FALSE	canonical	3	1857	junction_1	482	2	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACCGCTGTACGAACCA	NA	False	NA	NA	False	NA	NA	NA	1981	7800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4568_4780_6057
40591	chr1	+	1389	8	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	-1	0	intron_retention	FALSE	canonical	3	3576	junction_1	804.941676173384	201	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862734	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160865118_160865564_160865608_160865794_160865843_160866026
40592	chr15	-	2547	4	ISM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	2213	701	1905	-701	3prime_fragment	FALSE	canonical	3	7728	junction_1	254.309959607475	2	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCTCCCAGGAAGAAGG	3022	False	NA	-57	True	NA	NA	NA	11993931	11982125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874
40594	chr6	-	3090	2	FSM	ENSMUSG00000032757.7	ENSMUST00000204806.2	295	2	-1831	-964	-1831	-10	multi-exon	FALSE	canonical	3	308	junction_1	0	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTTAAGTGTTGTGTG	5015	False	NA	NA	False	NA	NA	NA	4081922	4076908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_4078037_4079960
40595	chrX	+	3299	24	NNC	ENSMUSG00000031060.17	novel	3564	24	NA	NA	39	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	149.26891782909	1	161	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTGCATCTTCCATTTC	596	False	NA	NA	False	NA	NA	NA	20484062	20517119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510954_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513984_20514104_20514226_20514338_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
40597	chr6	+	2972	2	FSM	ENSMUSG00000107761.2_ENSMUSG00000067714.14	ENSMUST00000088292.7	1393	2	-16	-1563	-16	6	multi-exon	FALSE	canonical	2	17	junction_1	0	72	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAATACAGAAGCACACAT	5022	False	NA	NA	False	NA	NA	NA	125044866	125060998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125044940_125058099
40598	chr5	-	2869	12	FSM	ENSMUSG00000029722.16	ENSMUST00000031736.16	2893	12	2	22	2	0	multi-exon	FALSE	canonical	3	93	junction_6	17.5678142969908	157	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	1766	False	NA	NA	False	NA	NA	NA	137682986	137648746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
40601	chr5	+	2716	14	NNC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	111.667511551457	3	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7198	False	NA	NA	False	NA	NA	NA	31609830	31639098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31609922_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313_31637377_31637848
40602	chr5	-	4780	7	ISM	ENSMUSG00000070780.12	ENSMUST00000167950.8	4895	8	255	13	113	-13	3prime_fragment	FALSE	canonical	3	18	junction_6	10.0235833025033	45	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTTTAAAGCAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	66309012	66173912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308881
40603	chr12	+	1591	8	FSM	ENSMUSG00000021033.12	ENSMUST00000220574.2	971	8	-59	-561	-5	-2	multi-exon	FALSE	canonical	3	19	junction_2	172.56918163154	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCTTTTGTCATGGAC	NA	False	NA	NA	False	NA	NA	NA	87194486	87211495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87194619_87204666_87204719_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
40604	chr17	-	2101	9	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	279	1841	multi-exon	FALSE	canonical	3	13	junction_6	85.4063814945932	157	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATGTTGGGTATTGATT	NA	False	NA	NA	False	NA	NA	NA	37299658	37278245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37278611_37278969_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281958_37298307_37298416_37298546_37298823_37299396
40606	chr17	-	1752	14	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-110	-1	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_13	167.868256318132	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTGTGTGCGAGTCATC	NA	False	NA	NA	False	NA	NA	NA	57318398	57310405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108_57318269_57318342
40607	chrX	+	2174	17	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	30	478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	753.704175638559	1	105	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAAAGGATAATTACCC	NA	False	NA	NA	False	NA	NA	NA	20529166	20548922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542167_20548736
40608	chr9	+	1459	5	NNC	ENSMUSG00000032215.16	novel	1543	6	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	394.67233244807	9	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTACATATCTCTTATTT	8609	False	NA	NA	False	NA	NA	NA	73020758	73030615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_73020866_73022169_73022288_73025149_73025228_73028483_73028570_73029545
40609	chr8	+	3002	5	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	21	7	1	-7	intron_retention	FALSE	canonical	3	83	junction_2	14.0890028036054	91	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGTAACTAAGGTTGTC	NA	False	NA	NA	False	NA	NA	NA	125448898	125460855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535
40610	chr1	-	2362	6	FSM	ENSMUSG00000026107.12	ENSMUST00000185534.2	708	6	0	-1654	0	0	multi-exon	FALSE	canonical	1	1	junction_5	22.105203007437	106	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	NA	False	NA	NA	NA	51517558	51508646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517459
40611	chr7	+	1566	8	FSM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	27	2395	0	323	multi-exon	FALSE	canonical	3	366	junction_1	56.4938140012529	2798	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	NA	False	NA	NA	NA	100142570	100148832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148124_100148442
40612	chr16	+	4109	25	NNC	ENSMUSG00000022702.17	novel	4218	25	NA	NA	17379	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	40.6903747491003	75	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGCCTTCCCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	18713540	18789059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18713587_18714652_18714797_18715203_18715524_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768044_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
40613	chr13	-	2333	4	FSM	ENSMUSG00000071291.11	ENSMUST00000076123.12	2391	4	55	3	3	-3	multi-exon	FALSE	canonical	3	37	junction_3	4.08248290463863	71	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGTCTTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	67648619	67638289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648489
40615	chr17	-	2758	2	ISM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	2	0	2	0	intron_retention	FALSE	canonical	3	75	junction_1	0	6	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTGCGTTGAATCTAAG	9374	False	NA	NA	False	NA	NA	NA	35827680	35823633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_35824082_35825370
40616	chr16	+	4605	9	NNC	ENSMUSG00000022774.14	novel	574	4	NA	NA	11036	41312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGCCACCGGGGCTCCG	NA	False	NA	NA	False	NA	NA	NA	31778499	31821911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_31782356_31783087_31783139_31784562_31784647_31787617_31787754_31796492_31796574_31802079_31802126_31802306_31802450_31802585_31802691_31821808
40617	chr13	-	2521	3	NNC	ENSMUSG00000094499.4	novel	3029	10	NA	NA	29	-22972	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	6	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACGGTCTTCAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	66549903	66522184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66524440_66528836_66529024_66549824
40619	chr18	-	2832	10	FSM	ENSMUSG00000038425.19	ENSMUST00000161542.8	2736	10	-101	5	29	0	multi-exon	FALSE	canonical	3	36	junction_9	94.1501296524877	328	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	NA	False	NA	NA	NA	70663310	70641755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70662821
40620	chr14	+	2650	15	NIC	ENSMUSG00000022214.16	novel	2593	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	36.2303430166213	7	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	55797481	55807518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55797579_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
40622	chr9	+	1655	10	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	2	-1	intron_retention	FALSE	canonical	3	766	junction_8	67.5113159239085	939	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799564	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802662_20802746_20803044_20803127
40623	chr6	-	1492	5	NNC	ENSMUSG00000030057.16	novel	1661	5	NA	NA	2	-95	at_least_one_novel_splicesite	FALSE	canonical	3	855	junction_1	3893.28171341351	4	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGTTTTGACTAAAGTTC	NA	False	NA	NA	False	NA	NA	NA	87828002	87820158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822117_87822303_87822446_87822540_87822658_87822776_87827885
40625	chr6	-	2671	10	NNC	ENSMUSG00000029735.18	novel	2671	9	NA	NA	-22	-11	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	16.5178541636872	115	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGACTTCAGATAGCAAT	NA	False	NA	NA	False	NA	NA	NA	43643131	43321945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43496094_43496187_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
40626	chr4	-	2003	19	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	78	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	111.637046928489	2	44	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTGTGGCAGTTACAA	NA	False	NA	NA	False	NA	NA	NA	108975141	108919283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922948_108923318_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
40628	chr6	-	1778	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	11	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	884.031004165878	1	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTGTGTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	83294577	83282964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290525_83294410
40629	chr19	-	3491	4	FSM	ENSMUSG00000071660.11	ENSMUST00000096751.11	3509	4	6	12	6	-12	multi-exon	FALSE	canonical	3	197	junction_3	24.7116706571342	104	184	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGATATTCACAAATGC	1891	False	NA	NA	False	NA	NA	NA	8796691	8786450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8789203_8793217_8793401_8795799_8796049_8796384
40630	chr5	+	2902	3	NIC	ENSMUSG00000040557.15	novel	1387	6	NA	NA	-1	10	intron_retention	FALSE	canonical	3	98	junction_2	6	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATACAACAACACA	3416	False	NA	NA	False	NA	NA	NA	134961225	134970066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_134963279_134964632_134964726_134969310
40631	chr10	-	2663	5	NIC	ENSMUSG00000019822.13	novel	2365	7	NA	NA	-8	-17	intron_retention	FALSE	canonical	3	172	junction_1	13.7181449183189	8	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACTTGCTTGACACACT	NA	False	NA	NA	False	NA	NA	NA	41366344	41363190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41363579_41363667_41363822_41363988_41364306_41364428_41365348_41365459
40632	chr10	-	3075	12	FSM	ENSMUSG00000020184.16	ENSMUST00000105263.9	3145	12	42	28	-2	-8	multi-exon	FALSE	canonical	3	51	junction_9	142.979973168527	1	153	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGTGAAAGAGATTTGT	NA	False	NA	NA	False	NA	NA	NA	117546621	117524807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545558_117545690_117545850_117545934_117546456
40633	chr7	+	1467	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	49	17	-6	1	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGCATGCTAATGGGACT	NA	False	NA	NA	False	NA	NA	NA	142606524	142621654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
40634	chr9	-	1335	12	NNC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1144	5062	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGAGGCCTCTGCCGTCCG	10004	False	NA	NA	False	NA	NA	NA	108442772	108437673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108437825_108438226_108438281_108438794_108438897_108438980_108439055_108439370_108439578_108439988_108440078_108440333_108440540_108440622_108440629_108442063_108442204_108442298_108442443_108442523_108442614_108442700
40635	chr11	+	2713	5	ISM	ENSMUSG00000034175.14	ENSMUST00000036320.12	1790	9	235	0	66	0	intron_retention	FALSE	canonical	3	72	junction_1	65.6010670644922	8	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	NA	False	NA	NA	NA	5049673	5056091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020
40636	chr7	+	1623	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	-35	0	-35	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	3	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495227	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
40637	chr2	-	3034	15	NIC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-228	0	intron_retention	FALSE	canonical	1	2	junction_14	23.4539279161056	19	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	93699730	93685706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93698783
40639	chr2	-	4859	8	ISM	ENSMUSG00000055485.7	ENSMUST00000069098.7	7864	15	48315	10	-3467	-10	3prime_fragment	FALSE	canonical	2	9	junction_5	4.7723694538543	33	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTTTCTTCAAATGCCT	8404	False	NA	NA	False	NA	NA	NA	156872859	156857728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_156860420_156862109_156863458_156864736_156864808_156865716_156865789_156869306_156869559_156871399_156871568_156872438_156872544_156872707
40640	chr4	-	1108	4	FSM	ENSMUSG00000028857.17	ENSMUST00000132713.2	587	4	320	-841	320	-16	multi-exon	FALSE	canonical	3	766	junction_1	21.6692306175267	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTTAAGTCTAAGTGG	NA	False	NA	NA	False	NA	NA	NA	132997107	132993371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088
40641	chr4	+	1843	10	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	14	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	763.586566437915	4	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTTGGTCATGATGTCT	NA	False	NA	NA	False	NA	NA	NA	118478060	118484970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016_118483102_118484150
40642	chr11	+	3344	1	Antisense	novelGene_ENSMUSG00000038909.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	44	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCGCAAGCGCCGCGGG	NA	False	NA	NA	False	NA	NA	NA	95197680	95201024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_95197700_95201000
40643	chr7	+	2336	5	ISM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	-12	-1	-1	0	intron_retention	FALSE	canonical	3	431	junction_1	14.8576579581036	31	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30008200	30013729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661
40644	chr14	-	2960	2	NNC	ENSMUSG00000061244.15	novel	12699	18	NA	NA	-9530	-31693	intron_retention	FALSE	non_canonical	0	0	junction_1	0	50	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTTCCGGGACGGCGG	NA	False	NA	NA	False	NA	NA	NA	49313640	49303996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_49304317_49311000
40645	chr2	-	1100	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1419.22545386168	3	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9602	False	NA	NA	False	NA	NA	NA	10085223	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068430_10068917_10069123_10073420_10073553_10074503_10074539_10085158
40646	chr17	-	2286	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	2	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	4	101	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	80514732	80507508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
40647	chr11	+	3332	4	NNC	ENSMUSG00000057322.13	novel	371	5	NA	NA	30	-25	intron_retention	FALSE	canonical	0	0	junction_3	7986.38847595638	39	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTATTAAAAACCCTGAA	NA	False	NA	NA	False	NA	NA	NA	114559403	114563132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_114559436_114559606_114559641_114559731_114561428_114561562
40649	chr6	+	2029	10	NNC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.253754496229	1	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	113023302	113045234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113023339_113024379_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
40650	chr10	+	3473	21	ISM	ENSMUSG00000025404.16	ENSMUST00000105249.9	3654	22	7684	13	-7470	4	3prime_fragment	TRUE	canonical	3	158	junction_7	24.6383846873126	191	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGGCCATCAGTCGCTG	NA	False	NA	NA	False	NA	NA	NA	127287863	127335240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127287903_127288560_127288648_127290498_127290626_127293518_127293598_127294007_127294068_127294678_127294820_127295335_127295445_127298056_127298153_127300850_127300883_127307636_127307870_127312388_127312568_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328437_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
40651	chr6	-	2255	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	616.247785662012	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGTTTGCCTTTTAT	8958	False	NA	NA	False	NA	NA	NA	47790296	47773077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778015_47780428_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
40654	chrX	+	2326	10	NIC	ENSMUSG00000001962.9	novel	1918	11	NA	NA	16	-39	intron_retention	FALSE	canonical	3	747	junction_4	56.7106583054023	5	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTCCCTTTTACAATA	215	False	NA	NA	False	NA	NA	NA	73356654	73363701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73356932_73358282_73358368_73358469_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362705_73362796_73362868_73362997_73363109_73363565
40655	chr2	-	1582	10	NIC	ENSMUSG00000026727.11	novel	1546	9	NA	NA	3	45	combination_of_known_junctions	FALSE	canonical	3	4	junction_6	135.725212592699	725	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGTGTGCACATTTTTT	7153	False	NA	NA	False	NA	NA	NA	13276116	13081777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13229361_13229463_13246555_13246607_13275721_13275834_13276010
40656	chr1	+	1518	9	NNC	ENSMUSG00000034432.12	novel	2287	8	NA	NA	-10	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	245.689558945837	12	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCATCTAAAGCTGGCTC	NA	False	NA	NA	False	NA	NA	NA	90531187	90540837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895_90539989_90540046
40657	chr1	+	2656	2	NIC	ENSMUSG00000073676.5	novel	774	4	NA	NA	70	-1	intron_retention	FALSE	canonical	3	8111	junction_1	0	11	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGACAGTCTTTGGTAAT	NA	False	NA	NA	False	NA	NA	NA	55127542	55130465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_55129962_55130228
40658	chr4	-	1950	5	FSM	ENSMUSG00000046671.19	ENSMUST00000130187.8	4085	5	2504	-369	2290	369	multi-exon	FALSE	canonical	3	510	junction_3	19.4036079119323	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	134260065	134255326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937
40659	chr3	-	1864	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	27	1918	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	36	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAATGTCAATCCTTTATA	NA	False	NA	NA	False	NA	NA	NA	53771224	53763324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764301_53764771_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
40661	chr11	+	3363	20	NNC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	44	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	144.647264146028	1	145	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGATATTGTTTGGAAGCA	NA	False	NA	NA	False	NA	NA	NA	119158897	119176261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119159049_119160913_119161505_119163695_119163850_119164813_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168590_119169136_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
40663	chr12	-	2612	8	ISM	ENSMUSG00000041645.15	ENSMUST00000110001.4	3063	9	1297	82	1297	-82	3prime_fragment	FALSE	canonical	3	805	junction_5	28.1598933207627	1	126	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCTGTGTGTCTGTAGTC	813	False	NA	NA	False	NA	NA	NA	103390742	103374323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130
40664	chr3	+	3261	11	FSM	ENSMUSG00000038861.15	ENSMUST00000072287.12	3692	11	209	222	64	-160	multi-exon	FALSE	canonical	3	26	junction_8	4.61410879802373	103	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTCTTGTTGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	94882250	94913932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94882397_94891293_94892231_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944_94912066_94913069
40665	chrX	+	1237	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	3	0	-3	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	1	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059303	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
40666	chr10	+	3222	5	NNC	ENSMUSG00000096856.8	novel	4735	4	NA	NA	48	-605	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	20.4129248271775	1	98	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTATTGTTGTGATAGAG	NA	False	NA	NA	False	NA	NA	NA	81484940	81502590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81485001_81497831_81497959_81498158_81498220_81498756_81500305_81501164
40668	chr4	-	1142	3	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	74	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	978.5	3	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAACTTCTTTTTGTGT	73	False	NA	NA	False	NA	NA	NA	41098109	41092728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093636_41095144_41095272_41098001
40669	chr18	+	4202	10	NIC	ENSMUSG00000032688.10	novel	1649	14	NA	NA	-1	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	11.916375287813	39	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACACACCTTTTTCATG	3556	False	NA	NA	False	NA	NA	NA	65586744	65612131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_65586776_65589827_65589907_65591239_65591444_65595806_65595985_65597111_65597187_65597784_65597913_65603459_65603610_65606070_65606229_65608203_65608330_65609058
40671	chrX	-	2062	10	Antisense	novelGene_ENSMUSG00000031262.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGCTCCGCCCCGCGCAT	NA	False	NA	NA	False	NA	NA	NA	133239786	133208915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_133209594_133210885_133211120_133212737_133212877_133218358_133218482_133218777_133218879_133236832_133236922_133237257_133237388_133237957_133238119_133238349_133238471_133239500
40672	chr11	-	650	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	361	1	-115	-1	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCAGTGTTCAGTACTC	NA	False	NA	NA	False	NA	NA	NA	93846724	93840640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
40673	chr17	-	4150	20	FSM	ENSMUSG00000023972.11	ENSMUST00000044442.10	4235	20	70	15	70	-15	multi-exon	FALSE	canonical	3	399	junction_15	41.2008794247642	106	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTTTTTTACAGCCTG	NA	False	NA	NA	False	NA	NA	NA	46940360	46875411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46876422_46877028_46877208_46878850_46879003_46882528_46882610_46883447_46883681_46884345_46884502_46885197_46885402_46887189_46887318_46887417_46887569_46887686_46887837_46889975_46890096_46890218_46890355_46890492_46890627_46897126_46897394_46897639_46897789_46900937_46901089_46901186_46901378_46901684_46901788_46902440_46902729_46940193
40674	chr2	+	2627	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	35	-1103	19	1099	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	1307	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGCTAAGATTCTCAGA	NA	False	NA	NA	False	NA	NA	NA	80469194	80490349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
40676	chr13	+	2386	3	NNC	ENSMUSG00000058900.6	novel	2591	4	NA	NA	3322	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8	4	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACAGAACATTGTATCTC	NA	False	NA	NA	False	NA	NA	NA	67324584	67332102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_67324639_67325128_67325171_67329812
40677	chr6	+	1284	9	Antisense	novelGene_ENSMUSG00000030357.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	99	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACTGGAGTCAAACTTTG	7725	False	NA	NA	False	NA	NA	NA	128407625	128413569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_128407846_128409386_128409624_128410067_128410254_128410487_128410575_128410667_128410765_128411271_128411425_128411714_128411832_128412669_128412822_128413534
40678	chrX	+	2802	6	NIC	ENSMUSG00000009995.18	novel	1851	10	NA	NA	3	0	intron_retention	FALSE	canonical	3	226	junction_4	13.4551105532433	17	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGTAGGA	NA	False	NA	NA	False	NA	NA	NA	73326358	73333757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327624_73331624_73331706_73331783_73332789_73332904
40679	chr12	+	2690	23	NIC	ENSMUSG00000021000.18	novel	2291	23	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	1	13	junction_1	125.21934474162	267	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCTTGTTTGGTATTAA	NA	False	NA	NA	False	NA	NA	NA	59177848	59236959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_59177906_59182849_59182982_59184366_59184389_59184483_59184573_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
40680	chr5	+	2423	14	NNC	ENSMUSG00000056310.15	novel	3044	16	NA	NA	18	-406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	85.0894412824028	4	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	4946	False	NA	NA	False	NA	NA	NA	130285893	130369998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130316109_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
40681	chr8	+	1458	10	NIC	ENSMUSG00000005481.19	novel	1656	11	NA	NA	34	2	combination_of_known_splicesites	FALSE	canonical	2	14	junction_3	739.758986444025	4	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCTCCAGCCCCATC	NA	False	NA	NA	False	NA	NA	NA	84441839	84449906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
40682	chr3	-	1482	9	NNC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	9183	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	907.454647627087	1	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	108343276	108333927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341501_108343240
40684	chr5	-	2863	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	0	-644	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.3110265396406	61	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTCATGTGGCCCTAAG	NA	False	NA	NA	False	NA	NA	NA	121757001	121735611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756943
40685	chr5	+	2781	2	NNC	ENSMUSG00000029313.19	novel	8323	20	NA	NA	67147	-505	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTGGTATTAAAATTG	NA	False	NA	NA	False	NA	NA	NA	103999371	104002683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104001847_104002377
40686	chr15	+	1898	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	-869	-9	12	1	multi-exon	FALSE	canonical	3	623	junction_2	60	1315	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTGTGCCATTACCTTG	2417	False	NA	NA	False	NA	NA	NA	102367648	102371220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102368582_102368804_102369155_102370605
40687	chr2	+	2680	12	NIC	ENSMUSG00000039787.14	novel	599	4	NA	NA	-23	-8	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	6.67547627297666	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTCACTTAACAGCTGA	NA	False	NA	NA	False	NA	NA	NA	29759152	29772844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29759358_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29763025_29765616_29765737_29765999_29766077_29766172_29766280_29768015_29768149_29770624_29770753_29770926_29771131_29771707
40688	chr7	+	2903	9	Antisense	novelGene_ENSMUSG00000035401.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	39	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTTTTGTACAACAATC	NA	False	NA	NA	False	NA	NA	NA	98238707	98264750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98240091_98243957_98244524_98246242_98246395_98248962_98249001_98249877_98250035_98251789_98251957_98259875_98260071_98262185_98262362_98264681
40689	chr4	-	1499	12	ISM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	180	5731	180	1173	5prime_fragment	FALSE	canonical	3	306	junction_2	31.2216813837716	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTCACCAGCTAAAGC	29	False	41124289	NA	False	NA	NA	NA	41124275	41120157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
40690	chr5	+	2134	13	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1903.89779283331	1	120	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAGCTACTGGATCATT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864705_129866167_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868850_129869006_129869086_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
40694	chr18	+	2693	3	FSM	ENSMUSG00000024521.9	ENSMUST00000025399.9	2727	3	11	23	11	-23	multi-exon	FALSE	canonical	3	99	junction_2	7	171	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTAACTATTGAAAAATG	NA	False	NA	NA	False	NA	NA	NA	66591614	66598608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_66591884_66593913_66594070_66596340
40695	chr17	-	1493	6	NIC	ENSMUSG00000039183.7	novel	1427	7	NA	NA	4	-5	intron_retention	FALSE	canonical	3	605	junction_4	60.398675482166	1667	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGAAGATGTGGTCAAGG	NA	False	NA	NA	False	NA	NA	NA	25105299	25101597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104812_25105252
40698	chr13	+	2865	26	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	26	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	211.927217695132	1	142	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATCCTTTATTGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	18901485	19050977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013441_19025335_19025421_19026322_19026451_19027642_19027773_19029481_19029520_19030056_19030108_19033055_19033194_19036510_19036573_19037525_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048287_19050299
40699	chr5	+	1504	11	NIC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	0	-23	combination_of_known_junctions	FALSE	canonical	1	7	junction_5	219.40148130767	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGCACACACCCTTCTTT	5838	False	NA	NA	False	NA	NA	NA	31855313	32242283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
40700	chrX	+	2257	10	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-5347	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1484.40995468915	1	115	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGTGCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100480849	100492195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100480988_100483098_100483287_100485121_100485424_100486535_100486634_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
40701	chr17	-	2763	8	FSM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	38	16	-35	-7	multi-exon	FALSE	canonical	3	156	junction_4	28.1765570527511	193	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCACATTCTCTCCTTGCTC	NA	False	NA	NA	False	NA	NA	NA	75858903	75844096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
40702	chr10	+	2316	16	FSM	ENSMUSG00000032763.12	ENSMUST00000105384.5	2329	16	10	3	10	-1	multi-exon	FALSE	canonical	3	14	junction_1	41.9345521815444	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTATACTGGTTT	5409	False	NA	NA	False	NA	NA	NA	78410343	78420333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_78410500_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
40703	chr11	-	1520	4	NIC	ENSMUSG00000020390.13	novel	1792	6	NA	NA	92	-59	combination_of_known_splicesites	FALSE	canonical	2	15	junction_2	341.18062990478	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCAGTCTCTCTAGTAG	NA	False	NA	NA	False	NA	NA	NA	51891214	51876382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_51877638_51879438_51879528_51888644_51888726_51891119
40704	chr13	-	2322	9	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	7	-6715	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.416072243844	2	79	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTCTCAAAAAAACATTT	5913	False	NA	NA	False	NA	NA	NA	38178126	38162091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38162465_38162693_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
40706	chr6	-	2855	4	NIC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	1822	-51	intron_retention	FALSE	canonical	3	569	junction_3	76.1810708480496	3	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACCAGAAAA	4866	False	NA	NA	False	NA	NA	NA	29555242	29540876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_29543360_29551850_29551964_29554793_29554962_29555151
40707	chr2	-	2015	10	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	22	-2	intron_retention	FALSE	canonical	3	44	junction_2	78.3010965976535	11	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTCTAGTAGGATCCA	9085	False	NA	NA	False	NA	NA	NA	25246287	25242303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25243529_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
40708	chr5	+	2540	13	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	39.3594546032674	246	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	NA	NA	NA	146168005	146239684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_146168145_146196314_146196391_146205024_146205097_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
40709	chr19	-	3434	10	FSM	ENSMUSG00000042694.18	ENSMUST00000182808.8	1618	10	27	-1843	15	1843	multi-exon	FALSE	canonical	1	1	junction_1	42.2937989792684	16	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGCACCCCAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	47525448	47493800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_47496038_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
40710	chr11	-	4641	1	FSM	ENSMUSG00000094483.3	ENSMUST00000179343.3	8319	1	3668	10	3668	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	127	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAATGACAGTCTTGTGCC	NA	False	NA	NA	False	NA	NA	NA	6422249	6417608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6417600_6422200
40711	chrX	-	2226	9	NIC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	39	-31	intron_retention	FALSE	canonical	3	1120	junction_7	112.478261788667	1	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCCAGAATAAAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	72830464	72822599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72826323_72830380
40712	chr14	+	2491	15	FSM	ENSMUSG00000022214.16	ENSMUST00000117236.8	2538	15	43	4	-13	0	multi-exon	FALSE	canonical	3	9	junction_1	36.2303430166213	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	55797505	55807518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55797579_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
40713	chr2	-	3412	6	NIC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	57	-2	intron_retention	FALSE	canonical	2	2	junction_4	113.133549400697	2	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGTTTTCATACTTGA	NA	False	NA	NA	False	NA	NA	NA	128785940	128768189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128777231_128777467_128785767
40714	chr12	+	1476	5	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	-2	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2334.85035655393	21	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758237	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758460_24758558_24758638_24758937_24759024_24762902_24762974_24763078
40715	chr11	+	2714	9	ISM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	19134	42	-1701	-26	3prime_fragment	FALSE	canonical	3	610	junction_8	24.1062102994228	1	135	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCCTGAAATAAATGTT	628	False	NA	NA	False	NA	NA	NA	117242304	117253108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
40716	chr3	+	2499	19	NIC	ENSMUSG00000028034.16	novel	2552	20	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	1	7	junction_17	475.062832101654	2	111	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	NA	False	NA	NA	NA	151916087	151938409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151937513_151937660_151937891
40717	chr17	-	1470	10	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-110	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	193.177395605282	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCCCAGAGTGTGTGCG	NA	False	NA	NA	False	NA	NA	NA	57318398	57310412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57310632_57310720_57310812_57310914_57311054_57311758_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
40720	chr19	+	4033	4	Fusion	ENSMUSG00000025036.8_ENSMUSG00000047731.18	novel	1655	12	NA	NA	-1178	1	multi-exon	FALSE	canonical	0	0	junction_1	71.4718281718204	77	64	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATCTCCTGCCGCTCCTTG	NA	False	NA	NA	False	NA	NA	NA	46586344	46645825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_46586691_46632791_46632895_46640912_46641075_46642403
40721	chr8	+	2919	25	FSM	ENSMUSG00000031691.15	ENSMUST00000093360.12	4863	25	31	1913	31	-3	multi-exon	FALSE	canonical	3	89	junction_1	89.272513111384	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCTGTGCATCTGTCCA	NA	False	NA	NA	False	NA	NA	NA	85763574	85782296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85763607_85764963_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781320_85781427_85781630_85781731_85781807_85781883_85781968_85782097_85782179
40722	chr11	-	1123	6	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-5	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	8388.86127194865	20	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCCAACTCAGTTGTT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807964_69808272_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
40724	chrX	-	2250	12	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	735	0	-4	0	3prime_fragment	FALSE	canonical	3	154	junction_9	18.0545546095372	336	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	149595968	149589416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
40725	chr5	+	2586	11	FSM	ENSMUSG00000029470.16	ENSMUST00000081554.13	1887	11	-5	-694	-1	0	multi-exon	FALSE	canonical	3	9	junction_5	30.411182153938	170	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGGGCTGTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	122845641	122867801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
40726	chr3	+	1310	3	Intergenic	novelGene_3177	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCTGCGCGCTGACCTGG	NA	False	NA	NA	False	NA	NA	NA	108342239	108352508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_108343285_108344826_108344895_108352311
40727	chr3	+	2910	10	FSM	ENSMUSG00000032952.12	ENSMUST00000047285.7	2799	10	-114	3	-6	-1	multi-exon	FALSE	canonical	3	54	junction_7	8.73053390247253	158	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTGGTGCCTGTCGTCA	NA	False	NA	NA	False	NA	NA	NA	103716829	103729338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
40728	chr7	-	2552	6	ISM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	95	30119	95	-22901	5prime_fragment	FALSE	canonical	3	2941	junction_3	120.037660756947	4	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGCCACCATATCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	16121615	16091093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
40730	chr3	-	3213	21	FSM	ENSMUSG00000014601.14	ENSMUST00000064759.7	3215	21	2	0	2	0	multi-exon	FALSE	canonical	3	175	junction_2	23.6893963620857	111	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	False	NA	NA	False	NA	NA	NA	107539008	107519847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
40732	chr1	-	1480	3	ISM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	1148	4	-30	-4	intron_retention	FALSE	canonical	3	139	junction_2	6.5	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAATGTCTGGACATGT	2027	False	NA	NA	False	NA	NA	NA	171172065	171169815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_171170366_171171005_171171132_171171261
40733	chr17	+	2074	4	NIC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	-4	-2	intron_retention	FALSE	canonical	0	0	junction_3	403.526950772808	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGAGGTTTGCACACAT	NA	False	NA	NA	False	NA	NA	NA	48717103	48724280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_48718437_48721253_48721313_48722248_48722362_48723711
40734	chr11	+	2064	3	NNC	ENSMUSG00000078695.9	novel	737	3	NA	NA	-4	-8	intron_retention	FALSE	canonical	3	8	junction_2	466	20	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTAACTAACTGTTTCT	2321	False	NA	NA	False	NA	NA	NA	97576647	97579439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97577042_97577326_97577447_97577889
40735	chr1	+	4479	1	Antisense	novelGene_ENSMUSG00000099141.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAGAAAGAAAGAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	77471343	77475822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77471300_77475800
40737	chr9	-	1122	8	NNC	ENSMUSG00000062270.15	novel	4640	10	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3036.8611547895	1	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGATTGTGTGGCCGT	NA	False	NA	NA	False	NA	NA	NA	89996649	89973725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976417_89979424_89979489_89984381_89984440_89989287_89989356_89992178_89992226_89996588
40738	chr10	+	2847	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	-31	113	16	-113	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	374	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATACTCAAGAAATGAGT	NA	False	NA	NA	False	NA	NA	NA	39009987	39026941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
40739	chr2	+	1392	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTTGCATCAGCGAAAGG	NA	False	NA	NA	False	NA	NA	NA	154714354	154734730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102_154730283_154734611
40740	chr5	-	1903	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	53	147	-18	-147	multi-exon	FALSE	canonical	3	527	junction_10	41.6678895284064	2	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCACACAGCAGCTTCATG	NA	False	NA	NA	False	NA	NA	NA	22755320	22691633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
40741	chr9	-	3713	11	Antisense	novelGene_ENSMUSG00000037808.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	174	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCGGTCTCGCGTCC	NA	False	NA	NA	False	NA	NA	NA	13757815	13739036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_13739356_13740053_13740119_13741018_13741076_13742277_13742434_13744267_13744468_13747180_13747227_13747396_13747478_13747952_13748011_13748130_13748267_13750933_13751036_13755322
40742	chr7	-	2014	1	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	89814	6	16646	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTTGTGTTTATTTTTC	8137	False	NA	NA	False	NA	NA	NA	80363350	80361336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_80361300_80363400
40743	chr6	+	2635	12	NNC	ENSMUSG00000033706.14	novel	2486	13	NA	NA	-32	-6	intron_retention	FALSE	non_canonical	0	0	junction_3	151.992714048953	1	84	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTTTGCAACAATGCCTT	NA	False	NA	NA	False	NA	NA	NA	85409022	85423411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85409083_85415089_85415199_85415731_85415822_85416683_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
40744	chr9	+	2178	13	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	-2	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	501.128060812137	1	96	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCACATAATAAACAATGTT	NA	False	NA	NA	False	NA	NA	NA	25163941	25219833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212822_25215109_25215149_25217421_25217562_25218808
40746	chr9	-	2218	12	NNC	ENSMUSG00000031935.10	novel	3964	12	NA	NA	8	127	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	52.4713223525145	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTAAAAAAATCTCCCCAA	NA	False	NA	NA	False	NA	NA	NA	15191191	15173175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15191026
40747	chr8	-	1884	14	NNC	ENSMUSG00000031948.15	novel	2131	15	NA	NA	11	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	662.291887598435	1	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTCTCTTTACCCATG	NA	False	NA	NA	False	NA	NA	NA	112737887	112720088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724920_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729225_112732308_112732421_112734838_112735019_112737841
40748	chr2	+	1070	1	Genic_Genomic	ENSMUSG00000061186.16	novel	NA	NA	NA	NA	66061	443	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGCAATTTTATTTGGG	3444	False	NA	NA	False	NA	NA	NA	10443321	10444391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_10443300_10444400
40750	chr13	-	2165	2	ISM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	12	3182	12	-3182	intron_retention	FALSE	canonical	3	221	junction_1	0	7	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTTTTAGTTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	23608024	23605712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_23606506_23606652
40751	chr5	-	3243	6	Antisense	novelGene_ENSMUSG00000000600.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAGGGGTAATTACTCC	NA	False	NA	NA	False	NA	NA	NA	3862788	3853999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_3856569_3857298_3857457_3859633_3859727_3861253_3861386_3862331_3862575_3862740
40752	chr14	-	2921	4	Antisense	novelGene_ENSMUSG00000022214.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	116	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTCCCATTTTCCTAAC	NA	False	NA	NA	False	NA	NA	NA	55802211	55798461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55800477_55800822_55801242_55801509_55801614_55801828
40753	chrX	-	2082	15	Antisense	novelGene_ENSMUSG00000079584.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.515078753637713	1	68	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGCAAATGAGCCACCA	NA	False	NA	NA	False	NA	NA	NA	56534131	56454513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_56454732_56459617_56459685_56461123_56461219_56463016_56463146_56463507_56463639_56467202_56467328_56468622_56468747_56481715_56481877_56482741_56482867_56484916_56485001_56508387_56508599_56509623_56509774_56513776_56513888_56517711_56517883_56533951
40754	chr10	+	1692	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	43	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3385.75991069058	1	75	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTGATTGAAGATGTGA	NA	False	NA	NA	False	NA	NA	NA	127919174	127926072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127919323_127919760_127919948_127920172_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
40756	chr10	-	2087	14	NNC	ENSMUSG00000034758.13	novel	2015	14	NA	NA	9	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	21.9426363489173	172	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	NA	False	NA	NA	NA	81436700	81426737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436526
40757	chr14	+	3018	4	FSM	ENSMUSG00000037536.15	ENSMUST00000163324.8	3132	4	105	9	15	-1	multi-exon	FALSE	canonical	3	23	junction_2	28.4526897771644	77	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATGAGGTCTGGTCTTA	NA	False	NA	NA	False	NA	NA	NA	47710122	47769410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47710175_47738250_47738328_47763661_47763772_47766631
40758	chr3	-	1503	9	NIC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-8	-6	combination_of_known_splicesites	FALSE	canonical	3	7	junction_8	351.024838864716	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTACCTGGCCCTGATCC	NA	False	NA	NA	False	NA	NA	NA	157630696	157599890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157630502
40759	chr10	+	2916	4	FSM	ENSMUSG00000035504.17	ENSMUST00000153167.2	848	4	-62	-2006	-9	-2	multi-exon	FALSE	canonical	3	516	junction_3	38.0029238641216	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGAGTGTGTCCGCTAAG	7210	False	NA	NA	False	NA	NA	NA	80165969	80172272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799
40760	chr18	+	3238	8	Antisense	novelGene_ENSMUSG00000044906.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGGTGGCAGCGTCC	4220	False	NA	NA	False	NA	NA	NA	70585282	70605030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_70585339_70585376_70586465_70589548_70589614_70591385_70591520_70597043_70597136_70600401_70601589_70602519_70602849_70604743
40761	chr15	-	2644	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	114	-8	114	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	5	97	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8244	False	NA	NA	False	NA	NA	NA	76501470	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
40762	chr19	-	1502	6	FSM	ENSMUSG00000024953.18	ENSMUST00000025904.12	1262	6	-241	1	-241	-1	multi-exon	FALSE	canonical	3	493	junction_5	11.3912246927185	1480	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGGTACAGGGTTGTC	NA	False	NA	NA	False	NA	NA	NA	6887715	6884074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
40763	chr8	+	2365	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	-10	1205	-10	-1205	multi-exon	FALSE	canonical	3	135	junction_1	1.5	104	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATACCTGCACAAAACAC	NA	False	NA	NA	False	NA	NA	NA	112738019	112745955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_112738775_112741968_112742094_112744470
40767	chr1	-	3423	5	ISM	ENSMUSG00000026393.11	ENSMUST00000187407.7	4336	10	103503	279	103036	-4	3prime_fragment	TRUE	canonical	3	136	junction_1	4.65698400254929	45	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTTTTAGTATCTATCA	NA	False	NA	NA	False	NA	NA	NA	138444376	138411853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_138414849_138426313_138426428_138430308_138430404_138443362_138443471_138444265
40768	chr2	-	2707	17	NNC	ENSMUSG00000027620.17	novel	2711	17	NA	NA	1	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	713.064118785962	1	125	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAAAGGCCACAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	156022103	155989178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019265_156019306_156021096_156021161_156021806
40769	chrX	-	1919	12	Antisense	novelGene_ENSMUSG00000031353.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGCAGCCGCCCTGGGAAA	NA	False	NA	NA	False	NA	NA	NA	161561709	161543390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_161543704_161544570_161544714_161551845_161551992_161552754_161552933_161554045_161554165_161555200_161555362_161556191_161556317_161556434_161556513_161557546_161557624_161558729_161558789_161560724_161560878_161561342
40771	chr17	+	2727	20	NIC	ENSMUSG00000024036.17	novel	1288	12	NA	NA	1	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	29.9874396605666	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTATTTAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	31515967	31569664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_31516044_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
40772	chr11	-	1858	10	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	31	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304.663424895631	2	32	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCCTGTCCCGGGTGATG	3889	False	NA	NA	False	NA	NA	NA	55310693	55285326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286399_55286663_55286776_55289373_55289523_55290017_55290054_55292828_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
40773	chr11	-	2327	7	NNC	ENSMUSG00000020744.14	novel	2614	8	NA	NA	147	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	57.531875222929	12	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGAGGAGAAGCTGACTG	NA	False	NA	NA	False	NA	NA	NA	115518627	115505012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518517
40774	chr8	-	2216	8	NIC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	18	-4	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	91.2323787850317	16	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTTCATTGATTGACT	NA	False	NA	NA	False	NA	NA	NA	22675817	22658464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_22658991_22659728_22659964_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
40775	chr11	-	2204	13	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAGAGATTGGACGCATG	1331	False	NA	NA	False	NA	NA	NA	50277350	50268504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50268628_50269115_50269237_50270284_50270450_50270645_50270802_50272296_50272423_50273361_50273541_50273624_50273697_50273752_50273889_50274005_50274142_50274506_50274566_50274656_50274749_50275471_50275562_50276601
40776	chr4	+	1696	8	Antisense	novelGene_ENSMUSG00000028494.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAAGCCTCCGAGCCACG	NA	False	NA	NA	False	NA	NA	NA	86574946	86588278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_86575642_86576817_86576955_86578327_86578507_86580170_86580453_86582667_86582753_86586634_86586800_86586886_86586942_86588180
40778	chrX	-	2529	17	NIC	ENSMUSG00000031174.18	novel	3313	18	NA	NA	1	258	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	30.3489471604865	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTCAATGCTATCCCAAA	NA	False	NA	NA	False	NA	NA	NA	10082996	10026588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_10027020_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
40779	chr10	+	3588	12	ISM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	9201	5	-52	-5	3prime_fragment	FALSE	canonical	3	144	junction_2	10.1655714534504	110	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTGGCAATGTGTCC	7445	False	NA	NA	False	NA	NA	NA	121210195	121233145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_121210470_121212112_121212179_121212540_121212640_121213926_121214095_121216022_121216106_121217077_121217197_121219244_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585_121228747_121230952
40780	chr5	-	1069	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	610	137	610	-137	multi-exon	FALSE	canonical	3	315	junction_2	24.5	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTAGTGGCATTGTGTG	NA	False	NA	NA	False	NA	NA	NA	116560313	116546686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_116547550_116553465_116553530_116560171
40781	chr1	-	1748	14	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	468.7402858954	2	69	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	78465476	78401721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431611_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78465421
40782	chr7	+	2290	9	NIC	ENSMUSG00000030763.8	novel	1369	11	NA	NA	29	0	intron_retention	FALSE	canonical	0	0	junction_5	97.8187098667734	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGACTCTGCTACATCT	6853	False	NA	NA	False	NA	NA	NA	122977233	123029567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003708_123017440_123017562_123020760_123022022_123027316_123027415_123029355
40784	chr3	+	3080	17	NNC	ENSMUSG00000028256.17	novel	913	7	NA	NA	-55	-7	intron_retention	FALSE	canonical	0	0	junction_1	35.4292869671406	15	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAATTTAATTTTAATAA	NA	False	NA	NA	False	NA	NA	NA	144824679	144859639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_144825487_144827477_144827557_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
40785	chr14	-	2028	16	FSM	ENSMUSG00000004558.16	ENSMUST00000004673.15	2099	16	61	10	-11	2	multi-exon	FALSE	canonical	3	23	junction_14	42.8779145429854	319	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATTGTTAATCCGGGTC	NA	False	NA	NA	False	NA	NA	NA	52150826	52142737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148542_52148585_52148922_52149004_52150779
40786	chr14	+	2680	14	FSM	ENSMUSG00000022019.17	ENSMUST00000168275.9	2657	14	-23	0	-23	0	multi-exon	FALSE	canonical	3	57	junction_12	16.6232175269033	93	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCTGGTTCACTTGTC	NA	False	NA	NA	False	NA	NA	NA	87654051	87782940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080_87749207_87776832_87776958_87782692
40787	chr16	-	2177	2	Antisense	novelGene_ENSMUSG00000052917.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_1	0	161	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGCATCATCTAACT	4111	False	NA	NA	False	NA	NA	NA	55936622	55932345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_55934491_55936590
40789	chr2	+	2274	11	FSM	ENSMUSG00000027315.14	ENSMUST00000028783.14	2273	11	-1	0	-1	0	multi-exon	TRUE	canonical	3	163	junction_1	46.3102580429002	259	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	NA	False	NA	NA	NA	119067841	119079995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
40790	chr8	-	2907	3	NIC	ENSMUSG00000031487.6	novel	620	4	NA	NA	31	-17	intron_retention	FALSE	canonical	2	6	junction_2	44.5	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACATTCTATTGTATA	NA	False	NA	NA	False	NA	NA	NA	27618610	27613408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27616170_27617487_27617548_27618524
40791	chr1	+	189	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	-36	378	-36	-378	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGATGAAGAAGTCATC	NA	False	NA	NA	False	NA	NA	NA	95426309	95426498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_95426300_95426500
40792	chr17	+	1526	7	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	6747	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	997.850467532864	2	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAATGACCATTTTTC	NA	False	NA	NA	False	NA	NA	NA	88293877	88298309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297781_88297858_88298059_88298151
40793	chr16	-	2179	10	NNC	ENSMUSG00000022889.8	novel	2294	10	NA	NA	-4	-705	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	317.758740688515	44	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTGTCCCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	84532122	84515168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_84516371_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294_84531502_84532041
40794	chr6	+	1578	11	FSM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	75	22	75	-22	multi-exon	FALSE	canonical	3	1160	junction_1	83.5499850388975	5	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTATTTTGATGATACTTC	NA	False	NA	NA	False	NA	NA	NA	88442465	88474532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497_88468601_88473389_88473482_88474209
40795	chr11	-	1378	10	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	-4743	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	204.828443723094	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCATCCTTATCGCCTG	NA	False	NA	NA	False	NA	NA	NA	95873437	95859004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
40797	chr4	+	4190	6	Antisense	novelGene_ENSMUSG00000066151.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	57	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTCCTAAAGGGGCAAAGC	5886	False	NA	NA	False	NA	NA	NA	62236880	62247392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_62239302_62240421_62240513_62241432_62241539_62242345_62242458_62244294_62244419_62246056
40798	chr16	-	1266	8	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	890.435917092847	7	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTCTTTCTAAATATCAA	NA	False	NA	NA	False	NA	NA	NA	22084674	22065209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065617_22067208_22067246_22067847_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
40799	chr11	+	1599	6	NNC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	34	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	188.843850839788	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCATTAGATGTGTGGTCC	9310	False	NA	NA	False	NA	NA	NA	62770349	62786007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62770422_62772762_62772846_62775868_62775992_62777014_62777147_62782767_62782897_62784947
40800	chr12	+	3863	20	NNC	ENSMUSG00000021244.16	novel	4893	20	NA	NA	838	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	39.7641941416404	84	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTCATAGGCTGTACA	NA	False	NA	NA	False	NA	NA	NA	85044101	85117266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85044116_85059670_85059900_85060677_85060897_85061423_85062368_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85107036_85107089_85111744_85111876_85116392_85116574_85116878
40803	chr13	-	2547	8	NNC	ENSMUSG00000021484.9	novel	4315	8	NA	NA	-10	1181	at_least_one_novel_splicesite	FALSE	canonical	3	138	junction_3	802.618647850616	8	78	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGTCTGACAGTACTG	3001	False	NA	NA	False	NA	NA	NA	55510434	55493224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55494851_55496127_55496248_55498968_55499084_55499219_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
40804	chr4	+	1261	1	Intergenic	novelGene_1817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAACTATGTTTTCTACAT	NA	False	NA	NA	False	NA	NA	NA	34816492	34817753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_34816500_34817800
40805	chr10	-	1069	1	Genic_Genomic	ENSMUSG00000090860.2	novel	NA	NA	NA	NA	9	580	mono-exon	FALSE	NA	NA	NA	NA	NA	18	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCTGTAAGGTCACTTC	NA	False	NA	NA	False	NA	NA	NA	79700259	79699190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_79699200_79700300
40806	chr11	-	4006	5	Antisense	novelGene_ENSMUSG00000046311.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	172	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGACAAAAGCGCGGACTGC	NA	False	NA	NA	False	NA	NA	NA	49109596	49094329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_49094366_49103521_49103602_49104414_49104470_49105352_49105476_49105884
40807	chr4	-	3682	14	NIC	ENSMUSG00000040728.16	novel	3696	14	NA	NA	26	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	2.77776462850274	48	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGCACTCTTCTTCTTG	9	True	NA	NA	False	NA	NA	NA	11386757	11331932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_11333474_11353294_11353464_11357459_11357659_11359737_11359957_11360953_11361256_11365003_11365047_11365143_11365277_11365373_11365485_11366907_11366963_11367084_11367184_11379290_11379406_11384348_11384463_11385646_11385776_11386304
40808	chr8	-	1390	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	27	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	909.417822296333	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTATGTCTGTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	108315063	108307018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307741_108307892_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
40809	chr9	+	1505	11	NNC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	264.391452206761	1	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799564	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20799614_20799702_20799832_20800661_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
40810	chr16	-	2836	3	NIC	ENSMUSG00000046962.17	novel	1452	3	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	8	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTTTGGGATGAATT	NA	False	NA	NA	False	NA	NA	NA	97763818	97750963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_97752070_97752669_97754294_97763712
40812	chr8	-	1977	16	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	74	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCGACAGCGCCGTCCC	NA	False	NA	NA	False	NA	NA	NA	107648889	107620277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107620343_107621220_107621384_107624693_107624882_107625073_107625159_107627477_107627564_107630857_107631077_107632756_107632927_107633019_107633114_107634836_107634932_107637571_107637637_107638855_107638972_107639973_107640135_107642785_107642889_107644209_107644307_107645248_107645437_107648807
40816	chr5	+	3102	20	FSM	ENSMUSG00000004952.14	ENSMUST00000135344.8	3057	20	-48	3	-4	-3	multi-exon	TRUE	canonical	3	36	junction_7	10.66669552166	110	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGCAATGCTGAGGTGTT	2186	False	NA	NA	False	NA	NA	NA	136112803	136140706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
40818	chr14	-	1569	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	18	0	18	0	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	755	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGTCATTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	54791800	54779241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
40820	chr19	+	3559	14	Antisense	novelGene_ENSMUSG00000025008.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	110	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTACTTCGTCATCAGCTT	NA	False	NA	NA	False	NA	NA	NA	40584062	40600666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40585989_40591250_40591386_40593748_40593904_40594146_40594242_40594669_40594777_40595720_40595846_40596067_40596151_40596663_40596698_40597133_40597250_40597343_40597454_40597644_40597777_40599737_40599859_40600096_40600221_40600370
40821	chr10	-	3436	8	FSM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	99	1895	0	588	multi-exon	FALSE	canonical	3	113	junction_7	23.5068379109447	79	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCTCCCCCCCCCCCACT	NA	False	NA	NA	False	NA	NA	NA	66932625	66846862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
40822	chr17	-	3363	8	Antisense	novelGene_ENSMUSG00000007603.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	108	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGCTGCTAAGGCGCGC	4965	False	NA	NA	False	NA	NA	NA	57076751	57071755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_57072791_57073779_57074675_57074785_57074923_57075021_57075902_57076048_57076125_57076248_57076437_57076531_57076666_57076733
40823	chr10	-	1731	11	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	43	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	619.27331607296	1	58	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358190	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354712_127355259_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
40824	chr15	-	1953	20	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	101	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	130.088995746775	6	36	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	76491588	76480007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480645_76485152_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
40825	chr10	-	1615	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-1	869	-1	-869	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	14	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTCGTCAAGCCCCTCT	8691	False	NA	NA	False	NA	NA	NA	128401857	128394505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
40826	chr11	+	4479	13	NNC	ENSMUSG00000019368.14	novel	2956	12	NA	NA	13	4625	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	5.18009008930668	24	26	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTACAAAATGGCTGTAA	NA	False	NA	NA	False	NA	NA	NA	3981795	4002649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3981900_3985122_3985199_3989435_3989480_3989770_3989831_3989936_3990126_3991736_3991833_3992190_3992252_3993286_3993371_3993652_3993760_3993832_3993973_3994063_3994234_3996212_3998944_4002032
40827	chr4	-	2041	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	-1	-1	-1	1	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	518	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGCAGTTACTTTGTT	21	False	34687460	NA	False	NA	NA	NA	34687439	34663255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
40828	chr8	-	2123	13	Antisense	novelGene_ENSMUSG00000011306.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCACAATGCTCCGGCG	3446	False	NA	NA	False	NA	NA	NA	70524517	70495694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70495728_70501155_70501331_70505240_70505337_70509030_70509251_70511927_70512056_70512402_70512500_70513181_70513307_70517483_70517847_70522099_70522207_70522643_70522823_70522979_70523086_70523761_70523908_70524169
40829	chr19	+	2900	20	NNC	ENSMUSG00000025001.12	novel	5868	22	NA	NA	27	-2777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	573.72830347211	1	134	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGATCTGGTCACATTAT	NA	False	NA	NA	False	NA	NA	NA	38919860	38956718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929138_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945638_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
40830	chr6	+	2384	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-15	679	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	174.780735653434	5	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCACATCTGGCTCTGAG	5711	False	NA	NA	False	NA	NA	NA	83254359	83281137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83254554_83254699_83254770_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
40831	chr17	-	797	1	NIC	ENSMUSG00000024426.18	novel	1452	13	NA	NA	177	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	NA	False	NA	NA	NA	36209297	36208500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36208500_36209300
40832	chr17	+	2351	15	Antisense	novelGene_ENSMUSG00000024039.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCCAGCCACACACAACAG	NA	False	NA	NA	False	NA	NA	NA	31831617	31856160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_31832268_31834447_31834535_31835020_31835128_31836099_31836239_31836364_31836435_31838109_31838220_31839903_31839990_31840412_31840545_31841407_31841482_31843988_31844110_31844466_31844548_31844857_31844992_31846449_31846556_31851800_31852150_31856055
40833	chr5	+	2790	17	NNC	ENSMUSG00000038828.14	novel	6110	17	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	98.4858611362565	10	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGCTTTCCTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	31026961	31034807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031877_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
40834	chr7	+	1751	11	FSM	ENSMUSG00000030826.20	ENSMUST00000033098.16	1772	11	18	3	18	2	multi-exon	TRUE	canonical	3	349	junction_4	47.8895604490164	1554	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTGGCTATCATGCTCT	2273	False	NA	NA	False	NA	NA	NA	45219594	45239132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
40835	chr15	+	1897	3	FSM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	-120	-213	-120	213	multi-exon	FALSE	canonical	3	51	junction_1	3.5	224	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAGGAAGAAAGCCGGG	3903	False	NA	NA	False	NA	NA	NA	98997172	99002831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98997482_98998703_98999657_99002196
40836	chr15	+	1756	8	ISM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	54	3414	18	-2333	5prime_fragment	FALSE	canonical	3	162	junction_1	14.5054528803932	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGTCTAGATACAGGGTAAA	NA	False	NA	NA	False	NA	NA	NA	84921343	84943617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942
40837	chr3	-	2927	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	115	151	10	-151	multi-exon	FALSE	canonical	3	308	junction_2	396.900211360208	1	160	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCCTTTCTGTCCTG	9288	False	NA	NA	False	NA	NA	NA	104771706	104730245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
40838	chr2	+	2116	4	NIC	ENSMUSG00000001403.14	novel	967	6	NA	NA	26	-4	intron_retention	FALSE	canonical	3	1632	junction_3	15.121728296285	12	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGTTTTCTCAAGTTA	NA	False	NA	NA	False	NA	NA	NA	164611848	164614823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164613300_164613773_164613979_164614086_164614147_164614423
40839	chr7	+	1334	7	NNC	ENSMUSG00000025503.6	novel	1229	8	NA	NA	-20	-2	intron_retention	FALSE	canonical	0	0	junction_1	1342.00927302642	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGCTGTTTCATTTCAC	3820	False	NA	NA	False	NA	NA	NA	140972091	140982877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140972207_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140982243_140982656
40841	chr2	-	1038	1	ISM	ENSMUSG00000042272.18	ENSMUST00000102660.8	8990	18	79991	4400	13650	1815	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACTGACTTTCCTCATG	NA	False	NA	NA	False	NA	NA	NA	77016121	77015083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_77015100_77016100
40843	chr2	+	2697	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	4	-35	combination_of_known_junctions	FALSE	canonical	3	371	junction_1	64.9806278398403	1	98	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGAGGACGGCATTGG	NA	False	NA	NA	False	NA	NA	NA	144398204	144432634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
40845	chr8	-	1924	10	FSM	ENSMUSG00000006517.6	ENSMUST00000006692.6	1756	10	-168	0	-168	0	multi-exon	FALSE	canonical	3	183	junction_4	22.2211110833319	624	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	123170329	123160339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164229_123164565_123164766_123166115_123166263_123166376_123166492_123166920_123166992_123170032
40846	chr7	-	2745	6	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	25	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	19.4072151531331	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTGTCACGTGGTGTGA	3476	False	NA	NA	False	NA	NA	NA	29553041	29543370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29545262_29545309_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552850
40847	chr16	+	2426	21	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	21193	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416.771412167389	1	101	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTTAGAAAACATTTCCT	NA	False	NA	NA	False	NA	NA	NA	48272792	48451262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48272860_48272916_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320523_48330528_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
40848	chr3	-	2679	21	NNC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	-12	2153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	100.769278552543	1	97	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGAGTTGCCACTGTC	NA	False	NA	NA	False	NA	NA	NA	36054770	36011307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_36011429_36014037_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030495_36030726_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044978_36048088_36048161_36049929_36050067_36051673_36051721_36054629
40849	chr10	-	3570	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-2386	-54	intron_retention	FALSE	non_canonical	0	0	junction_19	329.353594075661	1	145	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTGTCACACATTTTT	9465	False	NA	NA	False	NA	NA	NA	121464623	121425577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450910_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121464536
40850	chr15	+	3288	7	NNC	ENSMUSG00000022364.15	novel	3468	18	NA	NA	11	-13318	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	111.453527933794	2	100	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAAATCCACAGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	57775645	57803982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57779365_57779513_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57803535_57803711
40852	chr18	+	2469	6	Antisense	novelGene_ENSMUSG00000024592.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	179	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCGCCCGCCGCACTTC	NA	False	NA	NA	False	NA	NA	NA	57088899	57108434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_57090994_57091189_57091256_57091590_57091651_57095471_57095591_57106455_57106556_57108404
40853	chr4	+	3138	24	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	110	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	46.7349846492981	1	134	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAGAAAAAAAGGAAAAAAGA	3643	False	NA	NA	False	NA	NA	NA	108477246	108491284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487403_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
40854	chr5	-	1673	2	ISM	ENSMUSG00000029718.15	ENSMUST00000197912.5	799	5	-218	2668	10	-52	5prime_fragment	FALSE	canonical	3	490	junction_1	0	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTCTCCAAAGGATGCT	4818	False	NA	NA	False	NA	NA	NA	137608954	137606034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137607412_137608658
40855	chr13	-	1223	1	Intergenic	novelGene_1501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGGTGTACCTGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	93288952	93287729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_93287700_93289000
40857	chr6	-	1614	8	NIC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	33	-5	intron_retention	FALSE	canonical	3	942	junction_7	83.0657472568985	3585	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTACTGTCATCCCACACA	2226	False	NA	NA	False	NA	NA	NA	113717655	113705027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113705425_113706556_113706704_113707295_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
40858	chr4	-	2844	8	NIC	ENSMUSG00000028952.13	novel	2709	10	NA	NA	375	-9	intron_retention	FALSE	canonical	3	16	junction_6	13.9970842444753	7	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGCACTTGTTCAGTGT	9078	False	NA	NA	False	NA	NA	NA	152111719	152104241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105373_152105745_152105901_152105998_152106086_152106483_152106692_152107152_152107265_152110234
40859	chr1	+	1716	1	Intergenic	novelGene_338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGTAATAGGATCCGATG	NA	False	NA	NA	False	NA	NA	NA	13140119	13141835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_13140100_13141800
40860	chr1	+	1607	1	Intergenic	novelGene_339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGTCTCACACTCACTG	NA	False	NA	NA	False	NA	NA	NA	13142028	13143635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_13142000_13143600
40862	chr9	+	3068	8	Antisense	novelGene_ENSMUSG00000088577.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCGAGGTGAGGCCCCACC	NA	False	NA	NA	False	NA	NA	NA	108280690	108309031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108283054_108283809_108283914_108289691_108289780_108290161_108290211_108294520_108294678_108298582_108298760_108305613_108305676_108308963
40863	chr2	+	4599	5	Antisense	novelGene_ENSMUSG00000040093.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATCCCGCAAACAGCTGA	NA	False	NA	NA	False	NA	NA	NA	118359251	118380138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_118363143_118375563_118375726_118377195_118377496_118379523_118379652_118380020
40864	chr17	+	2119	7	FSM	ENSMUSG00000034254.18	ENSMUST00000037489.15	2190	7	29	42	29	-11	multi-exon	FALSE	canonical	3	118	junction_1	5.07991688470939	410	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGAGAGACGTGGGGTT	NA	False	NA	NA	False	NA	NA	NA	34824863	34832381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
40865	chr15	-	2592	11	Antisense	novelGene_ENSMUSG00000022351.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	104	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGCGCTTCAGCCGCCC	NA	False	NA	NA	False	NA	NA	NA	59202912	59186932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_59187977_59189642_59189895_59193160_59193341_59194680_59194780_59195460_59195575_59195653_59195825_59196307_59196411_59197921_59198025_59198416_59198515_59201587_59201675_59202571
40866	chr2	-	1674	11	FSM	ENSMUSG00000027246.13	ENSMUST00000116432.2	1674	11	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	7.95235814082842	230	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	NA	False	NA	NA	NA	121273082	121269507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270640_121270714_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
40868	chr9	-	1410	9	NNC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_7	543.684981744944	23	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTTATTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	37568533	37560482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565658_37566317_37566389_37568293
40870	chr17	+	2194	3	Antisense	novelGene_ENSMUSG00000024248.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCCCCTTAGGCCCGCC	5057	False	NA	NA	False	NA	NA	NA	83809362	83821763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_83810231_83810462_83811657_83821631
40871	chr16	-	3086	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	-31	0	-31	0	multi-exon	FALSE	canonical	3	119	junction_1	0	130	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4766	False	NA	NA	False	NA	NA	NA	28748456	28644927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_28647762_28748204
40872	chr5	+	2644	11	FSM	ENSMUSG00000054099.12	ENSMUST00000170496.6	2602	11	-20	-22	6	4	multi-exon	FALSE	canonical	2	9	junction_1	12.7342059037853	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGTTGGTTTACATTA	NA	False	NA	NA	False	NA	NA	NA	8472878	8504758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_8473040_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
40873	chr10	+	1503	16	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	-14	-4	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_15	588.098593397022	1879	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGGGATGCTGTCTCGG	NA	False	NA	NA	False	NA	NA	NA	111309127	111332741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111332032_111332614
40874	chr3	+	1416	13	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-13	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	274.657501364073	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	69629351	69656380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69629456_69629741_69629800_69631589_69631685_69638909_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
40875	chr3	+	2005	4	FSM	ENSMUSG00000037661.15	ENSMUST00000046748.13	1977	4	-43	15	-4	-15	multi-exon	FALSE	canonical	3	100	junction_2	83.6341238171756	213	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGGGAGATTAGCTCA	NA	False	NA	NA	False	NA	NA	NA	30910094	30951324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30910207_30931383_30931711_30944090_30944191_30949858
40876	chr17	+	2219	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	8	2	8	-2	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	280	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTCTGGACCATCCTG	1987	False	NA	NA	False	NA	NA	NA	34159641	34168669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
40877	chr5	-	1100	3	NIC	ENSMUSG00000001844.11	novel	820	6	NA	NA	1	514	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	19	12	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAATGCTGTGACCTCTT	5337	False	NA	NA	False	NA	NA	NA	143314943	143313535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143314326_143314432_143314653_143314853
40878	chr15	-	1445	6	NNC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	-36	-19	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_4	316.693795329179	3811	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATATTGTTTATACAAAAC	NA	False	NA	NA	False	NA	NA	NA	57897757	57885684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895291_57895476_57897479
40880	chr8	+	2096	6	NIC	ENSMUSG00000031562.17	novel	2072	6	NA	NA	9	-4	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	132.43775896624	116	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAAGACGTGTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	48563254	48594694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
40881	chr14	+	4768	19	NNC	ENSMUSG00000021823.11	novel	5267	21	NA	NA	20	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	67.8739072394585	1	175	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAATGCTCTAATTGAG	NA	False	NA	NA	False	NA	NA	NA	20979485	21083737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20979757_21017605_21017677_21032641_21032793_21033435_21033545_21035694_21035818_21037025_21037187_21045079_21045171_21045912_21046061_21051198_21051353_21053162_21053339_21057181_21057373_21058928_21059129_21060105_21060235_21064978_21065129_21069347_21069413_21074173_21074360_21079243_21079448_21079849_21079955_21081654
40882	chr7	-	2772	5	NIC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	-10	-12	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	40.4992283877113	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAACTGCCATCCATTCA	NA	False	NA	NA	False	NA	NA	NA	25418441	25410542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_25412539_25413777_25413908_25414175_25414270_25415159_25415613_25418342
40883	chr10	+	1196	3	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	7082	junction_2	335	57	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	80662519	80665124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80662740_80664070_80664217_80664294
40884	chr3	-	2534	1	NIC	ENSMUSG00000027829.16	novel	896	11	NA	NA	-1901	-927	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTTCATTTATATTTTT	NA	False	NA	NA	False	NA	NA	NA	65862315	65859781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_65859800_65862300
40885	chr3	-	2289	8	ISM	ENSMUSG00000027829.16	ENSMUST00000135719.8	1981	12	5722	-35	-442	-9	3prime_fragment	FALSE	canonical	3	162	junction_6	19.7907420120559	141	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATAAACTGTTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	65859731	65853580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854
40886	chr6	-	1424	7	Antisense	novelGene_ENSMUSG00000030060.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1851	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTCCCGCTCCTCGGTA	NA	False	NA	NA	False	NA	NA	NA	87913596	87890941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_87890993_87891471_87891676_87894818_87894963_87898505_87898632_87902611_87902790_87910220_87910415_87913069
40887	chr2	+	1511	7	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	109.48008443954	17	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	80	False	NA	NA	False	NA	NA	NA	13579121	13587637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580351_13580413_13583223_13583315_13584858_13585050_13585450_13585495_13586423_13586510_13587283
40888	chr15	+	1441	5	NNC	ENSMUSG00000043091.10	novel	1982	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4835.66439980071	1	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	98928201	98935994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915_98935251_98935364
40889	chr4	+	6302	8	NNC	ENSMUSG00000032890.18	novel	6505	8	NA	NA	5	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.7135922166671	50	25	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTTTTATGTATGGCTT	NA	False	NA	NA	False	NA	NA	NA	120712020	120753767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_120712131_120729673_120729848_120735034_120735283_120740271_120740414_120744130_120744241_120746184_120746287_120746551_120746692_120748491
40890	chr18	+	3148	8	NIC	ENSMUSG00000024498.17	novel	4101	21	NA	NA	199	42	intron_retention	FALSE	canonical	3	632	junction_2	55.1435973303394	4	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCGTAGACCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	42686105	42708661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704973_42706324_42706426_42707582
40891	chrX	+	2252	5	NNC	ENSMUSG00000045427.14	novel	2364	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	344.272693514894	1	81	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	NA	NA	NA	133502033	133507803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603_133507032_133507144
40892	chr4	-	2450	10	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	380.603906093111	3	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6827	False	NA	NA	False	NA	NA	NA	126096400	126057874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126058030_126061317_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126071979_126072019_126072351_126073704_126074608_126096362
40893	chr13	+	1692	7	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-74	695	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	126.590437588662	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAAGCTTGTGTGTGGACC	NA	False	NA	NA	False	NA	NA	NA	62163723	62199495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729_62197203_62197789_62198017_62198226_62198666_62199273
40894	chr15	+	2993	9	NNC	ENSMUSG00000059883.17	novel	3437	12	NA	NA	34273	8024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	34	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAGTAGCGGCTCCGCCT	NA	False	NA	NA	False	NA	NA	NA	94475825	94487720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_94477872_94478824_94478949_94479099_94479248_94480629_94480761_94482263_94482369_94483330_94483423_94484236_94484418_94486108_94486189_94487634
40895	chr11	+	1973	17	NNC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	27.3723600325219	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGAGTGCATTATTTGT	8676	False	NA	NA	False	NA	NA	NA	83363933	83397568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395537_83395614_83395931_83397243
40896	chr9	+	3681	14	NNC	ENSMUSG00000089702.2	novel	1910	2	NA	NA	2772	22364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	68	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCATGACCCGGCTCTC	5530	False	NA	NA	False	NA	NA	NA	15244640	15269005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15246600_15246864_15246963_15247142_15247284_15247614_15247716_15247848_15247944_15249492_15249716_15252169_15252276_15252734_15252920_15255419_15255561_15258236_15258333_15262110_15262206_15264168_15264394_15265899_15266030_15268919
40898	chr11	+	4329	21	NNC	ENSMUSG00000070327.15	novel	16716	67	NA	NA	-12179	1	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	21.5870331449229	3	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGAGTCCTGTTTGGGCT	1122	False	NA	NA	False	NA	NA	NA	119356703	119378245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119356923_119357049_119357241_119358052_119358176_119358795_119358907_119359643_119359887_119360957_119361040_119361680_119361716_119362540_119362636_119364189_119364350_119364991_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
40901	chr19	-	1240	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1087.72606845658	11	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902329	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15882736_15884344_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
40902	chr6	+	3534	9	Genic_Genomic	ENSMUSG00000087356.2	novel	1742	5	NA	NA	3963	2719	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTGAGGGCCGTCTTGA	NA	False	NA	NA	False	NA	NA	NA	34132826	34153889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_34135562_34136367_34136447_34137410_34137486_34138612_34138725_34140267_34140325_34140523_34140606_34144559_34144659_34147391_34147509_34153711
40903	chr2	+	1000	2	Intergenic	novelGene_2705	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTTTGTTTTCAAGA	NA	False	NA	NA	False	NA	NA	NA	129043977	129045014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_129044656_129044692
40904	chr3	-	1801	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	14	0	-12	0	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	3	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	NA	False	NA	NA	NA	157630700	157599884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
40905	chr8	+	1579	5	NNC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	-17	-9	intron_retention	FALSE	non_canonical	0	0	junction_3	399.124902129647	16	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCACACCAACCCACATGT	NA	False	NA	NA	False	NA	NA	NA	71819568	71822364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71819723_71819878_71820493_71820602_71820763_71821490_71821948_71822170
40908	chr12	+	1463	8	NIC	ENSMUSG00000021037.8	novel	739	6	NA	NA	-43	-5	intron_retention	TRUE	canonical	3	287	junction_1	942.812877748803	59	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCATGCATTTCTTACAA	NA	False	NA	NA	False	NA	NA	NA	87313209	87320748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_87313433_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220
40909	chr10	+	1476	1	NIC	ENSMUSG00000020265.17	novel	2630	4	NA	NA	816	2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGGCCTATGTTAAACAC	2695	False	NA	NA	False	NA	NA	NA	77451782	77453258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_77451800_77453300
40910	chr8	+	2149	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	16	67	16	-66	multi-exon	FALSE	canonical	3	1046	junction_1	100.936996902771	1	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	107620298	107649653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
40911	chr3	+	1657	8	NNC	ENSMUSG00000000561.15	novel	1095	8	NA	NA	0	660	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	447.456621999752	1	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTCCCTCCCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	105866823	105875503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105873034_105873091_105874597
40912	chr8	-	2098	6	Antisense	novelGene_ENSMUSG00000031562.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	759	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCTCTCCCCTCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	48594700	48562992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_48563283_48564692_48564822_48564998_48565139_48590290_48590407_48591813_48591912_48593375
40913	chr10	+	1787	9	NNC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-22	-652	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	129.254351957681	27	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATACAGTTTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	44144331	44239635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44223212_44223278_44238911
40914	chr14	-	3402	11	FSM	ENSMUSG00000021972.15	ENSMUST00000022544.14	3396	11	-12	6	-6	-6	multi-exon	FALSE	canonical	3	23	junction_3	9.87167665596883	81	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGCAAGGCTGTCCGGG	7673	False	NA	NA	False	NA	NA	NA	65187311	65049054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_65050869_65054465_65054586_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
40916	chr9	-	1604	11	Antisense	novelGene_ENSMUSG00000089571.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1059	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGTGCAGGAGACGCAAAGA	NA	False	NA	NA	False	NA	NA	NA	20803474	20799536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_20799613_20799701_20799876_20800635_20800735_20800928_20800979_20801064_20801237_20801933_20802012_20802200_20802307_20802376_20802501_20802580_20802660_20802744_20803042_20803125
40917	chr16	+	3285	17	NNC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	77	80	intron_retention	FALSE	canonical	0	0	junction_1	48.1325886873956	2	109	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTTCAGAAAAACGTGAT	6478	False	NA	NA	False	NA	NA	NA	44167853	44207586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_44167874_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205036_44205137_44205981_44206070_44207148
40918	chrX	-	2956	10	FSM	ENSMUSG00000036985.13	ENSMUST00000037960.11	2982	10	26	0	-3	0	multi-exon	FALSE	canonical	3	96	junction_4	12.3107902084129	76	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGCCTGCCTCCTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	47297538	47260845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_47262519_47266916_47267014_47267385_47267490_47270123_47270227_47270975_47271025_47271897_47272036_47280097_47280257_47283436_47283598_47295544_47295835_47297356
40919	chr4	-	1731	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	69	5	39	-5	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATGACTCATACAATGT	NA	False	NA	NA	False	NA	NA	NA	62443236	62440890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
40920	chr1	+	3960	25	NNC	ENSMUSG00000041763.15	novel	4649	30	NA	NA	-16783	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	145.041175906476	1	199	22	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGCTATTCACAATTGG	8702	False	NA	NA	False	NA	NA	NA	43993746	44042151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_43993901_43995630_43995786_43996595_43996673_43999243_43999376_44000027_44000132_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019472_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
40922	chr8	-	3563	1	Antisense	novelGene_ENSMUSG00000031533.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCTCCTGCCTTAGTCTC	NA	False	NA	NA	False	NA	NA	NA	22920177	22916614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_22916600_22920200
40924	chr5	-	2556	11	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	636.29722614514	1	110	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTTGTTCTTCAGTTA	NA	False	NA	NA	False	NA	NA	NA	92231578	92201577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92204178_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
40925	chr12	+	1675	14	NNC	ENSMUSG00000059669.9	novel	2209	15	NA	NA	7	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	90.2180789816982	309	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATACACAAGTAAATGACA	NA	False	NA	NA	False	NA	NA	NA	24548616	24608523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24548649_24550434_24550525_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564893_24573158_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
40927	chr2	+	2475	21	NNC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	99	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	177.476054722884	19	120	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGCAGACCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	166857328	166876846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876470_166876565
40928	chr6	+	1600	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	5	12	0	-7	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	2	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTACCAGTTTAAAGCTTT	5877	False	NA	NA	False	NA	NA	NA	67243999	67261283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
40929	chr9	-	3459	27	NIC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	-3	-9	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	170.982697487894	1	94	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAACTATAATGTTGTT	8305	False	NA	NA	False	NA	NA	NA	95393935	95343039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
40930	chr14	-	4292	17	FSM	ENSMUSG00000021803.11	ENSMUST00000022337.11	4332	17	36	4	36	-4	multi-exon	TRUE	canonical	2	4	junction_16	5.32351798625683	39	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATAAACTGACCTCCCGG	NA	False	NA	NA	False	NA	NA	NA	36820268	36799817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36801899_36802418_36802677_36803289_36803519_36804100_36804169_36804720_36804886_36806880_36807034_36807468_36807673_36809333_36809435_36810894_36810974_36811323_36811468_36812539_36812657_36813899_36813987_36815958_36816049_36817011_36817063_36818153_36818300_36819218_36819315_36820045
40931	chr11	-	1596	7	NIC	ENSMUSG00000040904.11	novel	1688	8	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	264	junction_1	166.574974777793	1130	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	70130665	70126031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130481
40932	chr11	+	2184	7	ISM	ENSMUSG00000034773.17	ENSMUST00000133930.8	2813	11	-14	4603	-14	-30	intron_retention	FALSE	canonical	3	289	junction_3	23.3428552000155	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCTCGAGCCACCTCAG	NA	False	NA	NA	False	NA	NA	NA	102139693	102151410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904
40933	chr2	+	1187	6	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	310	junction_1	2525.09163398083	670	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
40934	chr12	-	2655	4	FSM	ENSMUSG00000021079.17	ENSMUST00000221815.2	1193	4	9	-1471	0	-1	multi-exon	FALSE	canonical	3	163	junction_3	67.9607729993315	29	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGTTGTCTTTACTGT	NA	False	NA	NA	False	NA	NA	NA	71183449	71169948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_71172332_71173106_71173172_71178774_71178861_71183328
40935	chr4	+	2331	7	NNC	ENSMUSG00000028419.6	novel	1519	8	NA	NA	141	-2	intron_retention	FALSE	canonical	2	3	junction_2	214.831264536199	6	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTAATTGTAGTATCGCT	-15	True	NA	NA	False	NA	NA	NA	40948547	40965301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40949559_40950513_40950739_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
40936	chr11	-	2738	2	FSM	ENSMUSG00000051650.12	ENSMUST00000055549.4	2602	2	-11	-125	-11	7	multi-exon	FALSE	canonical	3	85	junction_1	0	162	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAGTGATACTCTTTCT	3571	False	NA	NA	False	NA	NA	NA	22810499	22784739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_22787196_22810217
40937	chr15	-	3968	2	FSM	ENSMUSG00000048546.9	ENSMUST00000050467.9	4151	2	183	0	21	0	multi-exon	FALSE	canonical	3	45	junction_1	0	70	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCTGCCTACTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	81742503	81732472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81736074_81742136
40938	chr17	+	998	7	FSM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	32	1	-9	0	multi-exon	FALSE	canonical	3	984	junction_4	70.4430423975443	3836	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTTACTACCTTTTCAC	NA	False	NA	NA	False	NA	NA	NA	46957186	46961057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
40940	chr17	+	1592	6	NNC	ENSMUSG00000046711.17	novel	1030	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2255.93217983165	2	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775626	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27781926_27781970
40941	chr8	+	976	1	Antisense	novelGene_ENSMUSG00000037070.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTTCGTGGTGGTGGTCCT	5970	False	NA	NA	False	NA	NA	NA	79231902	79232878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_79231900_79232900
40942	chr3	-	2298	15	NNC	ENSMUSG00000015748.14	novel	2933	16	NA	NA	10	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.611288405348	1	87	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGATATTTTTCATATGG	NA	False	NA	NA	False	NA	NA	NA	95763083	95737926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95738314_95741064_95741149_95741395_95741513_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760944_95763056
40943	chr6	-	1238	7	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3598.7481349615	341	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446825	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441116_51443503_51443686_51443885_51444033_51444164_51444274_51446650
40944	chr2	+	1674	4	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-1	-13	intron_retention	FALSE	canonical	3	4686	junction_3	204.682409817964	3	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTATCTTGACTGCCTT	NA	False	NA	NA	False	NA	NA	NA	26801016	26803317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801139_26801433_26802458_26802682_26803070_26803176
40945	chr9	+	2782	6	NNC	ENSMUSG00000047412.17	novel	8861	6	NA	NA	243	292	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_3	140.661864057036	3	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTTGGACAAAATAAAAGA	NA	False	NA	NA	False	NA	NA	NA	30942184	30981179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_30942255_30964535_30965610_30973336_30973422_30975525_30975639_30977954_30978256_30980040
40946	chr15	-	2593	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-24	343	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	758.899896211046	1	145	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGACCTCTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	11399711	11383747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389818_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
40948	chr5	-	2109	11	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	39	729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	223.58776800174	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCTTATGTATGTTACT	NA	False	NA	NA	False	NA	NA	NA	4154382	4132550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133_4154220_4154271
40949	chr17	+	2782	2	Antisense	novelGene_ENSMUSG00000048905.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTACTTCCGGATCTAGAA	863	False	NA	NA	False	NA	NA	NA	29115365	29118706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_29117897_29118455
40950	chr5	+	2889	17	ISM	ENSMUSG00000037426.19	ENSMUST00000119705.8	7929	43	74408	2566	4192	4	3prime_fragment	FALSE	canonical	3	129	junction_6	22.906655010062	3	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTCCCTCCCTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	33095485	33149009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
40951	chr3	+	2348	3	ISM	ENSMUSG00000048100.14	ENSMUST00000131814.8	596	4	74	-699	61	0	3prime_fragment	FALSE	canonical	3	169	junction_1	2	4	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	108479087	108489385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_108480275_108485431_108485530_108488322
40952	chr17	-	1363	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-216	3066	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	46	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTTGACCTCTGGCCCC	NA	False	NA	NA	False	NA	NA	NA	35821664	35816907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820874_35821036_35821185
40954	chr2	-	2924	8	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	14	-843	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	159.593616567141	2	147	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAACAAACTCAGATTTAT	NA	False	NA	NA	False	NA	NA	NA	121337132	121323234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121323365_121323781_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
40955	chr14	+	4975	27	NNC	ENSMUSG00000033060.17	novel	6092	31	NA	NA	-14	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	7.40871468302282	37	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAACTCTTTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	101967378	102172134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_101967662_102031676_102031748_102044889_102044960_102078307_102078415_102112887_102112919_102114241_102114356_102118238_102118438_102121597_102121851_102126112_102126143_102133902_102134021_102135992_102136136_102137506_102138081_102139499_102139806_102148201_102148317_102149434_102149597_102150675_102150783_102151712_102151774_102153123_102153181_102155357_102155481_102156047_102156141_102156644_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005_102170109_102171331
40956	chr7	+	2515	17	ISM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	24	8242	4	-2129	5prime_fragment	FALSE	canonical	2	50	junction_16	33.5018073206506	152	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGTGTCGTGATATTGTC	NA	False	NA	NA	False	NA	NA	NA	35096483	35129870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
40958	chr7	+	1774	9	FSM	ENSMUSG00000063065.14	ENSMUST00000057669.16	1800	9	23	3	23	-3	multi-exon	FALSE	canonical	3	189	junction_5	18.155147341732	325	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCTGCCTCTGTCTGTG	5239	False	NA	NA	False	NA	NA	NA	126358795	126364988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
40959	chr7	+	2751	12	NNC	ENSMUSG00000004056.16	novel	4544	14	NA	NA	2	-5	intron_retention	FALSE	non_canonical	0	0	junction_4	232.727876419672	1	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGACCAGGGCCCAGTCCA	NA	False	NA	NA	False	NA	NA	NA	27291172	27338868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328266_27328416_27328720_27328805_27333986_27334110_27335463_27335567_27335688_27335904_27336347_27336436_27336516_27336620_27337486
40960	chr5	-	1566	17	NIC	ENSMUSG00000025533.16	novel	1824	17	NA	NA	18	1	combination_of_known_junctions	FALSE	canonical	1	7	junction_16	77.2141654345237	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGCATATGCTTCTGCC	NA	False	NA	NA	False	NA	NA	NA	130053123	130040343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053048
40961	chr2	+	2533	5	NNC	ENSMUSG00000026960.7	novel	2548	4	NA	NA	48	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	250.515967554964	568	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGTGTGTAATGGCAAG	NA	False	NA	NA	False	NA	NA	NA	53082147	53109231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_53082535_53084295_53084350_53092930_53093064_53098950_53098985_53107306
40962	chr11	+	2077	16	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	62.8255432836747	13	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCACTTTGTGATTGAG	NA	False	NA	NA	False	NA	NA	NA	51154012	51172587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51159595_51159674_51161363_51161423_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
40963	chr11	-	1641	6	NNC	ENSMUSG00000019173.12	novel	1915	6	NA	NA	10124	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.1290114918218	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGATTGTTGGTGTCT	9270	False	NA	NA	False	NA	NA	NA	100610917	100605834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100606765_100606823_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740
40966	chr1	+	3623	4	ISM	ENSMUSG00000050565.17	ENSMUST00000060404.5	5135	5	18532	1388	-3791	-1388	3prime_fragment	FALSE	canonical	3	36	junction_1	4.96655480858378	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCGCGTAAAACCACATC	NA	False	NA	NA	False	NA	NA	NA	155935167	155943219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_155935334_155937333_155937916_155939338_155939441_155940446
40967	chr18	-	2620	8	Antisense	novelGene_ENSMUSG00000025423.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	74	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGTGGAACCCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	77218998	77126250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77126674_77184940_77185418_77193498_77193584_77207605_77207657_77207749_77207841_77214555_77214688_77216649_77216758_77217745
40969	chr6	+	1303	3	NNC	ENSMUSG00000007458.15	novel	2976	6	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	688.5	189	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2952	False	NA	NA	False	NA	NA	NA	122285966	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122293673
40970	chr5	+	2919	2	ISM	ENSMUSG00000029521.8	ENSMUST00000200630.2	634	4	-1352	28	102	-28	intron_retention	FALSE	canonical	3	312	junction_1	0	50	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAGTGTTGGGATAA	9301	False	NA	NA	False	NA	NA	NA	110987967	110997731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_110989410_110996254
40971	chr13	-	1918	10	NIC	ENSMUSG00000021713.10	novel	2342	11	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	104.615462823277	4	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACGTGTCAAATGACTGG	NA	False	NA	NA	False	NA	NA	NA	104365351	104341628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104359345_104359467_104359599_104359701_104361857_104361961_104365113
40972	chr8	+	729	8	ISM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	15	11757	0	-3930	intron_retention	FALSE	canonical	3	173	junction_4	12.6248863401633	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTGGCATTTCAGCCATT	NA	False	NA	NA	False	NA	NA	NA	106738153	106768694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455
40973	chr2	-	993	9	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	3	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1515.24115242426	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAATCAGTCTCATTAT	9573	False	NA	NA	False	NA	NA	NA	10085252	10060847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10060973_10061580_10061618_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
40975	chr17	-	647	1	Intergenic	novelGene_120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGAGGCCAGCCTGATCT	NA	False	NA	NA	False	NA	NA	NA	31742335	31741688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_31741700_31742300
40976	chr17	-	1050	2	Antisense	novelGene_ENSMUSG00000024038.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTGTGCACACGCACCA	NA	False	NA	NA	False	NA	NA	NA	31741502	31739145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_31739234_31740540
40977	chr5	-	2906	3	NIC	ENSMUSG00000038690.16	novel	540	5	NA	NA	-19	0	intron_retention	FALSE	canonical	3	4948	junction_2	246	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACTGCTTGCCTGGTGT	8612	False	NA	NA	False	NA	NA	NA	145128357	145120518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_145120678_145121341_145124044_145128312
40978	chr14	-	2382	2	FSM	ENSMUSG00000021811.8	ENSMUST00000223844.2	713	2	-19	-1650	-19	1091	multi-exon	FALSE	canonical	3	933	junction_1	0	2	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCCCTCAGAGCTGTTGA	NA	False	NA	NA	False	NA	NA	NA	20438908	20436438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20438280_20438367
40979	chr5	+	1772	11	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	236.534754317415	11	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAAGGTTTATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	64250318	64285694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260770_64265066_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
40980	chrX	+	2114	16	Antisense	novelGene_ENSMUSG00000036932.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	49	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGGACATTGGATAGAGGA	NA	False	NA	NA	False	NA	NA	NA	47563820	47602352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_47564066_47564439_47564639_47566578_47566704_47569004_47569144_47570879_47570980_47571595_47571690_47572033_47572138_47573402_47573513_47574334_47574411_47575021_47575111_47583617_47583709_47585958_47586090_47586211_47586338_47588649_47588751_47593688_47593829_47602108
40981	chr3	-	1840	6	ISM	ENSMUSG00000005968.15	ENSMUST00000196733.5	2555	12	36164	0	-7407	0	3prime_fragment	FALSE	canonical	3	78	junction_4	10.590561835899	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	94530015	94520065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994
40982	chr2	-	2776	14	Antisense	novelGene_ENSMUSG00000039050.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	114	6	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCTCGCCGCGCCCCGCG	2217	False	NA	NA	False	NA	NA	NA	179804474	179761134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_179761262_179778770_179778904_179780003_179780156_179782900_179782970_179786620_179786755_179786876_179786978_179790216_179790400_179791969_179792078_179792806_179792899_179794991_179795115_179797058_179797203_179799623_179799745_179800817_179800918_179803285
40983	chr11	+	1218	10	ISM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	2985	1861	2985	819	3prime_fragment	FALSE	canonical	3	1417	junction_8	117.311551008415	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTCACCGCTTCTC	1016	False	NA	NA	False	NA	NA	NA	109544731	109558621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
40984	chr5	+	2144	2	ISM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	9995	3	764	-3	3prime_fragment	FALSE	canonical	3	1076	junction_1	0	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTTGAAGTTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	119819077	119822786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_119819131_119820695
40985	chrX	+	2319	8	NIC	ENSMUSG00000009995.18	novel	1742	9	NA	NA	0	-14	intron_retention	FALSE	canonical	3	118	junction_6	47.1151433691321	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGCCACCATACCT	NA	False	NA	NA	False	NA	NA	NA	73326355	73333740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332789_73332904
40986	chr15	-	886	3	ISM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	4	5212	4	-4046	5prime_fragment	FALSE	canonical	3	1228	junction_2	27.5	17	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGAAAGTGCACCACTG	NA	False	NA	NA	False	NA	NA	NA	81756108	81753932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_81754700_81755366_81755391_81756013
40987	chr15	+	1747	11	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	1571	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	705.443753959166	1	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGGTTTGTGGTCTCA	1076	False	NA	NA	False	NA	NA	NA	78961028	78978598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78961242_78962283_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970827_78973702_78974162_78977536_78977618_78978400
40988	chr7	+	4703	16	FSM	ENSMUSG00000030522.15	ENSMUST00000032736.11	5205	16	103	399	-9	-399	multi-exon	FALSE	canonical	3	34	junction_5	5.98739416515139	43	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTCGTCACCAGTATGA	830	False	NA	NA	False	NA	NA	NA	63937520	63990155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_63937590_63938086_63938148_63947207_63947345_63949286_63949360_63950287_63950431_63957875_63957967_63963831_63964013_63967838_63967927_63968006_63968096_63969162_63969294_63970312_63970383_63970910_63970982_63976399_63976570_63983059_63983231_63986459_63986643_63987180
40989	chr5	+	2142	20	NNC	ENSMUSG00000029414.12	novel	6961	64	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.748194147836	4	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGATGTTGGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	123887775	123959651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_123887888_123891885_123891927_123940114_123940174_123940284_123940502_123941044_123941119_123941366_123941578_123941690_123941801_123945323_123945371_123947097_123947177_123948875_123948995_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954729_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
40990	chr10	-	2892	21	NNC	ENSMUSG00000020115.4	novel	3024	21	NA	NA	15	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	58.1665496655939	1	55	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAAGGCTTGTGTGCTTT	3939	False	NA	NA	False	NA	NA	NA	121422631	121382365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388198_121388312_121388415_121388933_121388974_121389649_121389727_121389830_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403946_121404045_121406535_121406672_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
40991	chr8	+	1074	9	FSM	ENSMUSG00000031813.9	ENSMUST00000034272.9	1062	9	-12	0	-4	0	multi-exon	FALSE	canonical	3	346	junction_1	32.3177582762171	1516	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGAGTGTATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	71995561	72000670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
40992	chr16	-	1740	3	ISM	ENSMUSG00000022500.16	ENSMUST00000117360.8	763	4	9097	-1297	9097	-252	3prime_fragment	FALSE	canonical	3	340	junction_2	14	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCACTCAGTGAACAATCCA	8803	False	NA	NA	False	NA	NA	NA	10784346	10777390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_10778916_10781120_10781278_10784288
40993	chr15	-	1876	7	NNC	ENSMUSG00000018042.19	novel	1982	9	NA	NA	3973	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	608.655827760375	1	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	2476	False	NA	NA	False	NA	NA	NA	83050405	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038856_83044198_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275
40994	chr17	+	2355	1	Intergenic	novelGene_35	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	98	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGTATGCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	17259462	17261817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17259500_17261800
40995	chr13	-	1204	2	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-476	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	39	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312305_34314231
40996	chr17	+	1607	7	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	39	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	107.570777733649	1	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGTCACCTTCTAAGGGA	NA	False	NA	NA	False	NA	NA	NA	17284413	17309877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308107_17308694_17308915_17309250_17309519_17309602
40997	chr11	+	2388	17	NIC	ENSMUSG00000034121.13	novel	2499	18	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	47.7820573018785	2	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	6469	False	NA	NA	False	NA	NA	NA	87744053	87754629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
40998	chr7	-	891	2	NIC	ENSMUSG00000030888.15	novel	3053	7	NA	NA	-115	335	intron_retention	FALSE	canonical	3	316	junction_1	0	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGCGGAACCGGCAGAAAA	9872	False	NA	NA	False	NA	NA	NA	105385695	105383563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105384264_105385504
41000	chr7	+	1074	5	NIC	ENSMUSG00000030890.17	novel	1795	13	NA	NA	-184	-1	intron_retention	FALSE	canonical	3	302	junction_1	26.0096136072799	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCGTGTGGGGACAGAGG	NA	False	NA	NA	False	NA	NA	NA	105390605	105392131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
41001	chr19	+	2148	10	NNC	ENSMUSG00000024891.7	novel	2362	12	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_6	26.1226924670562	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	6149	False	NA	NA	False	NA	NA	NA	5075978	5081992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079279_5079349_5079436_5079523_5080315_5080519_5081029
41002	chr16	+	2965	17	NNC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	22	82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.2053052399874	1	95	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTCAGAAAAACGTGATAC	6423	False	NA	NA	False	NA	NA	NA	44167798	44207588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_44167870_44175802_44175863_44178113_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190385_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197162_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
41004	chr10	-	1238	1	Intergenic	novelGene_3516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATGCACAGATGGCCCC	3965	False	NA	NA	False	NA	NA	NA	95294674	95293436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_95293400_95294700
41005	chr15	+	2980	5	Antisense	novelGene_ENSMUSG00000115127.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	9.12071817347735	57	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGTCTGCTCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	36668116	36681711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36668981_36669505_36669695_36673470_36673619_36679828_36679873_36679976
41006	chr17	-	2513	11	NNC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	128.371492162396	135	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5833	False	NA	NA	False	NA	NA	NA	46593925	46568799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575015_46575117_46575808_46575905_46593271_46593366_46593885
41007	chr8	+	1701	15	NNC	ENSMUSG00000031629.15	novel	3010	14	NA	NA	0	257	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	124.05347760592	581	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGCATAGAATGATCCTG	NA	False	NA	NA	False	NA	NA	NA	47005103	47031670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012057_47012135_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
41008	chr17	+	1886	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	28	6	9	-6	multi-exon	FALSE	canonical	3	410	junction_1	446.592917963328	2	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCAAATTGAGTGCTGG	941	False	NA	NA	False	NA	NA	NA	24633676	24644863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
41010	chr8	-	2619	11	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-11	0	intron_retention	FALSE	canonical	1	2	junction_6	68.8102463300343	1	98	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	NA	NA	NA	106578651	106571304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
41014	chr2	-	2163	6	NNC	ENSMUSG00000005973.7	novel	2208	5	NA	NA	-679	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	665.609495124581	6	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCCATGTGTCTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	105226372	105217275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225508_105226229
41015	chr5	+	3051	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	12	-2054	12	-11	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	264	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCATGATATCCATGTGG	NA	False	NA	NA	False	NA	NA	NA	148239995	148252864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
41017	chrX	-	1169	5	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	950.813960509626	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537614	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7534746_7535165_7535257_7535653_7535780_7535841_7535998_7537381
41018	chr11	-	2624	7	NNC	ENSMUSG00000034993.8	novel	2766	6	NA	NA	85	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	161.621385411158	5	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATGTTGTATCTGAGAG	NA	False	NA	NA	False	NA	NA	NA	101356971	101349563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_101349768_101349834_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353939_101356526
41019	chr17	+	4555	25	NNC	ENSMUSG00000117440.2	novel	1964	2	NA	NA	-8791	39458	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	16	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGCAGCAGCCGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	80545739	80597572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_80546034_80546218_80546358_80549378_80549584_80553105_80553237_80554535_80554615_80555701_80555834_80557280_80557365_80557447_80557543_80558658_80558938_80560515_80560717_80561693_80561864_80562978_80563077_80565501_80565619_80567647_80567857_80571373_80571431_80572503_80572639_80574943_80575069_80576180_80576379_80577796_80577917_80580357_80580539_80582191_80583030_80583276_80583465_80585651_80585810_80588623_80588856_80597482
41020	chr13	+	1317	11	Genic_Genomic	ENSMUSG00000021666.17	novel	4416	21	NA	NA	6508	17103	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTCCAGTCTGGGTCGC	NA	False	NA	NA	False	NA	NA	NA	97314464	97334806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
41021	chr10	-	2911	6	NNC	ENSMUSG00000020029.7	novel	3210	5	NA	NA	-33	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	296.277167530676	301	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTATGTTTATTTTTAG	NA	False	NA	NA	False	NA	NA	NA	95400041	95382871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95385353_95385637_95385726_95387310_95387356_95388347_95388459_95399523_95399635_95399966
41022	chr5	-	1861	10	FSM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	9	0	9	0	multi-exon	FALSE	canonical	3	425	junction_3	13.7822573362984	607	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9783	False	NA	NA	False	NA	NA	NA	115257396	115248357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
41023	chr5	-	2661	4	NNC	ENSMUSG00000044968.17	novel	3954	5	NA	NA	25750	197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.3127305053477	4	53	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAAAAAATTTTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	21880642	21867701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_21869874_21870176_21870361_21875486_21875602_21880452
41024	chr9	+	3263	14	NNC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	40	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	13.6750106822541	10	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTCCTGTGGTGTAGA	1676	False	NA	NA	False	NA	NA	NA	59587466	59626151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490_59625142_59625435_59625714_59625801
41025	chr1	-	1132	6	Antisense	novelGene_ENSMUSG00000041763.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGCGAGGACACCCGGCTA	NA	False	NA	NA	False	NA	NA	NA	43994188	43973188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_43973412_43979267_43979397_43988469_43988565_43990263_43990372_43992416_43992540_43993734
41026	chr10	+	3255	14	FSM	ENSMUSG00000043259.16	ENSMUST00000062883.7	3262	14	6	1	6	-1	multi-exon	FALSE	canonical	3	12	junction_11	8.57062549069641	56	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATTATGTTGAAAGCA	9950	False	NA	NA	False	NA	NA	NA	70276761	70394560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_70276906_70284587_70284645_70286856_70287059_70312983_70313103_70334715_70334780_70356607_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388858_70389056_70390317_70390420_70393069
41027	chr2	-	2669	9	NIC	ENSMUSG00000041777.13	novel	2821	10	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	29.521178838251	337	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTTTTTTGCCTATTG	NA	False	NA	NA	False	NA	NA	NA	73142909	73113453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73137198_73137273_73140800_73140896_73142760
41029	chr5	+	3582	11	NNC	ENSMUSG00000018001.19	novel	3738	13	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	27.3205051197814	53	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCTAAGACTCAATTCTT	NA	False	NA	NA	False	NA	NA	NA	143608250	143696005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143687073_143687187_143687351_143687501_143688568_143688681_143692838_143692962_143693149_143693305_143693587
41030	chr2	+	1166	11	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	10865	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	887.627602094482	3	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTAGTCTTTTATTTGTC	NA	False	NA	NA	False	NA	NA	NA	31371083	31410670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31371152_31378551_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
41031	chr5	+	2800	13	NIC	ENSMUSG00000054099.12	novel	4467	12	NA	NA	24	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	13.6829171678492	112	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTATTTGTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	8472922	8504795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_8473040_8474796_8474888_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
41032	chr13	-	1951	17	NNC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	-11	426	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	104.333899093248	2	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100629098	100596299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628992
41033	chr11	-	1669	6	NNC	ENSMUSG00000020390.13	novel	1792	6	NA	NA	90	-58	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	274.754435814966	1333	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTCTCTCTAGTAGT	NA	False	NA	NA	False	NA	NA	NA	51891216	51876381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888614_51888726_51891119
41034	chr7	+	2117	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	86	-4	18	4	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTCTCTTTTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	121758747	121769100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
41035	chr8	+	1871	4	FSM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	-64	4	-38	-1	multi-exon	FALSE	canonical	3	44	junction_2	17.3076733143296	366	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATGAGTGTTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	112370073	112397639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_112370245_112385017_112385074_112392709_112392837_112396122
41036	chr12	+	5533	9	NNC	ENSMUSG00000042523.13	novel	3021	9	NA	NA	-24	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	6.21992765231236	64	64	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGTCCTTTGGTTACT	9888	False	NA	NA	False	NA	NA	NA	84161115	84190288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84161174_84168056_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127_84187388_84187602
41037	chr16	-	1800	18	NNC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	126.285144479717	3	25	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTGGGTCTGTGATC	NA	False	NA	NA	False	NA	NA	NA	18630364	18599201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18626047_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
41038	chr16	-	564	1	Intergenic	novelGene_3730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
41040	chr4	+	3258	2	NNC	ENSMUSG00000001985.10	novel	8973	16	NA	NA	219345	-268	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	26	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACACACTGGTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	125603837	125607698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125605250_125605852
41041	chr5	-	2994	20	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	332.841564299304	1	138	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8285	False	NA	NA	False	NA	NA	NA	137305908	137293976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294399_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296069_137296250_137296489_137296569_137296652_137296715_137296987_137297143_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301301_137305307_137305448_137305685
41042	chr8	+	2295	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	65	1112	-22	-1112	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	2	92	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGACTCTGAATGGCTTGT	1884	False	NA	NA	False	NA	NA	NA	106937632	106978314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
41043	chr1	-	603	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	92	-41	92	41	mono-exon	FALSE	NA	NA	NA	NA	NA	6	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033671	65033068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033700
41044	chr13	+	1157	1	Intergenic	novelGene_1388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCATGCTTGACATTGAGA	NA	False	NA	NA	False	NA	NA	NA	59795647	59796804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_59795600_59796800
41045	chr13	+	943	4	Antisense	novelGene_ENSMUSG00000021556.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAAAACGCATGAGT	NA	False	NA	NA	False	NA	NA	NA	59796925	59813494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_59797480_59798509_59798564_59812010_59812192_59813340
41047	chr13	-	2913	2	NNC	ENSMUSG00000042364.12	novel	4447	2	NA	NA	7340	-7	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	260	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTCCAAGCCATCGCTTG	NA	False	NA	NA	False	NA	NA	NA	113742837	113728727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113731399_113742595
41048	chr8	+	1912	16	NNC	ENSMUSG00000031901.13	novel	1860	16	NA	NA	-5	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	53.5609310349749	18	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCTGCTTCAACCTTACA	NA	False	NA	NA	False	NA	NA	NA	106738148	106780455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758432_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
41049	chr4	+	2977	2	FSM	ENSMUSG00000074088.7	ENSMUST00000181560.2	1048	2	-537	-1392	-537	-6	multi-exon	FALSE	canonical	3	1085	junction_1	0	12	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTACAAAAACCTTGTG	NA	False	NA	NA	False	NA	NA	NA	130278277	130283813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_130279809_130282367
41050	chr17	+	1310	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	43	-3	at_least_one_novel_splicesite	FALSE	canonical	1	61	junction_1	1772.12772888977	1	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAGCTGAATTTTGTTTT	3079	False	NA	NA	False	NA	NA	NA	35816957	35821666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35820005_35820121_35820304_35820436_35820877_35821037_35821184
41051	chr11	-	4669	23	NNC	ENSMUSG00000042302.15	novel	4971	25	NA	NA	-242	-10	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	6.15250402560811	37	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACCTTAAACCCTGCT	9650	False	NA	NA	False	NA	NA	NA	22237037	21955837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_21956872_21957082_21957198_21963483_21963558_21964854_21964955_22003431_22003556_22006529_22006628_22006782_22006922_22009136_22009262_22018358_22018507_22039524_22039669_22045317_22046200_22050421_22050471_22051051_22051231_22087837_22088058_22096462_22096626_22101066_22101190_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487_22235875_22237002
41052	chr5	-	1559	9	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	11289	0	-354	0	3prime_fragment	FALSE	canonical	3	608	junction_5	64.907506307052	15	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	34806203	34795879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735
41053	chr7	+	1788	16	Antisense	novelGene_ENSMUSG00000036427.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	74	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAAGATGGAGACGCTGC	NA	False	NA	NA	False	NA	NA	NA	33901561	33928801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_33901988_33902215_33902313_33903450_33903583_33904992_33905072_33905232_33905367_33907043_33907183_33907280_33907328_33907676_33907736_33915380_33915434_33917721_33917768_33918455_33918530_33920045_33920182_33920264_33920354_33926546_33926661_33928353_33928426_33928710
41054	chr8	-	1777	8	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	-2	717	intron_retention	FALSE	non_canonical	0	0	junction_3	171.915855070118	914	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3884	False	NA	NA	False	NA	NA	NA	95328331	95301567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309641_95313949_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
41055	chr1	-	1925	6	FSM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	178	3455	48	0	multi-exon	FALSE	canonical	3	370	junction_4	24.3770383763081	342	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTAGACTGTACAT	NA	False	NA	NA	False	NA	NA	NA	93682324	93633111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568_93678708_93682178
41056	chr8	+	2340	11	NIC	ENSMUSG00000015016.9	novel	2206	10	NA	NA	1	-12	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	14.7566933965574	6	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTTCTCTGACTGTGAC	9535	False	NA	NA	False	NA	NA	NA	123502244	123544607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123502330_123504815_123504963_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
41057	chr3	+	3233	13	NNC	ENSMUSG00000028161.18	novel	441	2	NA	NA	50696	-878	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	59.1629106789042	2	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCGCATCCTTTCACTG	NA	False	NA	NA	False	NA	NA	NA	136427226	136642610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_136427358_136503486_136503688_136574362_136574488_136581849_136581962_136583390_136583537_136587161_136587302_136593707_136593786_136596196_136596292_136608863_136608990_136611059_136611135_136627593_136627679_136634282_136634381_136640789
41058	chr7	+	1808	2	ISM	ENSMUSG00000037563.16	ENSMUST00000152918.8	628	4	-14	0	-14	0	intron_retention	FALSE	canonical	3	20881	junction_1	0	46	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050173	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28050277_28050416
41059	chrX	+	1176	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5605.09585605416	6	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACCAGTTTTGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	36059301	36062452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060925_36061388_36061530_36062039
41060	chr19	+	3172	8	NNC	ENSMUSG00000025184.11	novel	4112	7	NA	NA	4	360	intron_retention	FALSE	canonical	0	0	junction_6	40.3899361075938	136	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTATGGTGTTTATAAAT	NA	False	NA	NA	False	NA	NA	NA	42507240	42579809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_42507297_42550990_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42572086_42572163_42579043
41061	chr11	+	1931	14	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	0	-41	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	176.054557170758	14	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGGGTGCGGGGAA	NA	False	NA	NA	False	NA	NA	NA	60345449	60359539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60345570_60347047_60347265_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
41062	chr8	+	4006	16	NNC	ENSMUSG00000002190.14	novel	3902	15	NA	NA	31	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.2604675634006	27	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGTGTGTGTCTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	84116537	84155180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84116607_84120688_84120836_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
41063	chr15	+	1419	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	282	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	596.354078966515	419	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACACCTCACGCCAGCAT	NA	False	NA	NA	False	NA	NA	NA	100513511	100518631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248_100517976_100518398
41064	chrX	-	2867	7	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	48	310	intron_retention	FALSE	canonical	3	293	junction_4	77.2307149606511	5	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCTTTCATTTCTCATG	NA	False	NA	NA	False	NA	NA	NA	72161260	72151704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72152123_72152218_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158878_72161207
41065	chr1	-	1964	5	NNC	ENSMUSG00000058407.13	novel	3472	4	NA	NA	19	-698	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	386.652621871364	190	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTTTATTGATTAATG	NA	False	NA	NA	False	NA	NA	NA	38036286	38027421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_38027593_38028170_38029539_38033072_38033192_38034713_38034923_38036189
41066	chr4	-	4139	14	FSM	ENSMUSG00000066043.14	ENSMUST00000102568.10	4614	14	105	370	57	-363	multi-exon	FALSE	canonical	2	21	junction_11	24.1391430016078	5	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCCACCATACCTGCCGG	NA	False	NA	NA	False	NA	NA	NA	132149695	132083603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132110592_132110674_132114202_132114377_132140380_132140435_132149655
41069	chr16	-	2536	10	NIC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	241	0	intron_retention	FALSE	canonical	2	3	junction_8	86.9901370881624	12	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	38253266	38216478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38237421_38237624_38253165
41070	chr1	+	2232	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	-15	-991	8	-5	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	506	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGTAATTGCCTTTATT	NA	False	NA	NA	False	NA	NA	NA	185064353	185089969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
41072	chr15	-	1517	9	NIC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	-11	-1402	intron_retention	FALSE	canonical	3	2074	junction_1	201.112375302963	24	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTTTATTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	10486006	10476266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479738_10481801_10481846_10483380_10483493_10485820
41073	chr9	+	2588	5	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-51	-12	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	17.0953209972788	133	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAATCACAAGGGCTTTA	NA	False	NA	NA	False	NA	NA	NA	75375846	75393951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_75375966_75386953_75387087_75388729_75388947_75390380_75390480_75391931
41074	chr4	-	1773	5	FSM	ENSMUSG00000028583.15	ENSMUST00000119654.2	762	5	-102	-909	-1	-6	multi-exon	FALSE	canonical	1	7	junction_2	239.080530365816	55	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAATGAGGCCAACATTT	NA	False	NA	NA	False	NA	NA	NA	143026135	142994006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_142994997_142995757_142995870_143000469_143000627_143002640_143002778_143025758
41075	chr13	-	2318	19	NNC	ENSMUSG00000009470.18	novel	8453	24	NA	NA	11	-3694	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	130.217114518715	1	60	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCAGCTTGTGGAGATCA	NA	False	NA	NA	False	NA	NA	NA	99062851	98989424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993448_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
41076	chrUn_JH584304v1	-	2117	5	Intergenic	novelGene_4662	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_4	404.649848634594	1	77	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	59654	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53833_54318_54480_54720_54868_55111_55702_59591
41077	chr2	-	3416	1	ISM	ENSMUSG00000026915.17	ENSMUST00000028279.10	16348	17	73981	21	13214	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	11	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGCTGTGTCAAATAGGA	NA	False	NA	NA	False	NA	NA	NA	37463316	37459900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_37459900_37463300
41078	chr3	-	2015	9	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	10	-9	intron_retention	FALSE	canonical	3	9	junction_8	311.097553027985	6	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAAATCAGTGGCTGTTG	6164	False	NA	NA	False	NA	NA	NA	153618582	153612938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618254
41080	chr7	+	2269	9	NIC	ENSMUSG00000005566.15	novel	3245	17	NA	NA	-69	-2	intron_retention	FALSE	canonical	3	3333	junction_1	450.337095962569	4	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGCTCATGCCTCAGCT	NA	False	NA	NA	False	NA	NA	NA	12761799	12764957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12761877_12761947_12762063_12762334_12762706_12762807_12762915_12763014_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
41081	chr10	+	2921	8	NNC	ENSMUSG00000019826.12	novel	2844	7	NA	NA	6	2	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_7	38.0542040907387	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATACTTGATCTTTATCA	NA	False	NA	NA	False	NA	NA	NA	41326384	41341572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41339957_41340039_41340272
41082	chr7	-	1593	10	NNC	ENSMUSG00000038650.16	novel	1656	10	NA	NA	18	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	268.780556689506	7	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCTTGTCGTTCTTTGTG	8010	False	NA	NA	False	NA	NA	NA	140752752	140740234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140740479_140740562_140740734_140742336_140742485_140742792_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
41083	chr17	+	2248	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233886.2	704	3	56	-1600	56	-3	multi-exon	FALSE	canonical	3	29	junction_1	156.5	422	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTGGTACAGAACTGCT	1884	False	NA	NA	False	NA	NA	NA	73144586	73157429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_73144815_73153273_73153439_73155574
41084	chr10	+	2969	4	FSM	ENSMUSG00000078435.6	ENSMUST00000201286.4	2634	4	-1	-334	-1	334	multi-exon	FALSE	canonical	1	5	junction_2	1.24721912892465	69	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGAACAAGCATATCTCCT	NA	False	NA	NA	False	NA	NA	NA	81963845	81989233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81963933_81974086_81974214_81986050_81986112_81986539
41085	chrX	+	897	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	45	59	multi-exon	FALSE	canonical	0	0	junction_1	0	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068854	13070078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069009_13069335
41086	chr2	+	1595	4	NNC	ENSMUSG00000074578.15	novel	738	5	NA	NA	403	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	440.292579491814	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTGCTGTGTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	166905555	166907778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166906362_166906567_166907138_166907353_166907401_166907606
41087	chr11	-	1851	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	-1	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	183	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCATCACTGATGTCTC	6422	False	NA	NA	False	NA	NA	NA	102076056	102053332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054364_102054692_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
41089	chr1	-	1697	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	17	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	80.7258735887489	253	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGATCTAGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	194813825	194786107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813395
41090	chr3	+	3079	13	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-3	-2225	intron_retention	FALSE	canonical	1	21	junction_2	168.21827751136	2	66	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTGGAGACAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	54600240	54617948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600979_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821
41091	chr7	-	2241	1	Genic_Genomic	ENSMUSG00000030717.10	novel	NA	NA	NA	NA	-13	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGGCGTGTGTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	126224660	126222419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_126222400_126224700
41093	chr5	-	2080	12	NNC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-3	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	175.87674121149	2	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTGTAATTTTATGTA	NA	False	NA	NA	False	NA	NA	NA	92582953	92563419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576074_92578673_92578813_92578897_92578982_92582862
41094	chr4	+	1992	19	NIC	ENSMUSG00000028576.13	novel	2139	20	NA	NA	21	9	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	43.9934408691361	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTGTTTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	94502748	94581475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_94502889_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
41095	chr15	-	1518	12	Antisense	novelGene_ENSMUSG00000046434.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATACGATAACGAACGTG	9939	False	NA	NA	False	NA	NA	NA	103153376	103148881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_103148954_103149501_103149622_103149870_103150021_103150332_103150538_103150636_103150726_103150805_103150900_103151068_103151155_103151377_103151504_103152050_103152206_103152383_103152454_103152680_103152966_103153310
41096	chr11	+	2524	4	FSM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	-3	1	-3	-1	multi-exon	FALSE	canonical	3	91	junction_2	26.4701089281224	243	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATGTGTAATTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	60619220	60623776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60619394_60621108_60621262_60621455_60621619_60621741
41097	chr7	-	2362	4	NIC	ENSMUSG00000003873.12	novel	1100	5	NA	NA	256	-28	intron_retention	FALSE	canonical	3	3184	junction_2	23.3666428910958	33	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACCTCAGGTCCACT	9960	False	NA	NA	False	NA	NA	NA	45115943	45111148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45112928_45114612_45114749_45115400_45115548_45115643
41098	chr9	-	1805	9	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	118.892743155333	22	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	NA	False	NA	NA	NA	53159376	53009934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115663_53149401_53149479_53151776_53151838_53159117
41099	chr7	-	2083	2	NNC	ENSMUSG00000038886.11	novel	4610	13	NA	NA	8519	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	51	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGATGTGCAGTGAAGT	NA	False	NA	NA	False	NA	NA	NA	80000974	79998847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79999222_79999265
41100	chr11	+	2970	2	Antisense	novelGene_ENSMUSG00000044807.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAACAGCAAACCCATTC	NA	False	NA	NA	False	NA	NA	NA	50704666	50708762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_50706824_50707949
41101	chr5	+	1277	5	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-179	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1632.15026881718	22	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATATATTCTCGCTGTG	577	False	NA	NA	False	NA	NA	NA	77099444	77115347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107238_77114482
41102	chr15	+	3072	1	Antisense	novelGene_ENSMUSG00000037525.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCACATTTTAAAAATTAT	NA	False	NA	NA	False	NA	NA	NA	99367527	99370599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99367500_99370600
41103	chr1	-	2132	15	ISM	ENSMUSG00000053024.15	ENSMUST00000086521.11	7177	23	84	10006	10	-4787	5prime_fragment	FALSE	canonical	1	1	junction_8	3.76408917893011	1	58	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATTGCCAAGTACACCCT	NA	False	NA	NA	False	NA	NA	NA	132470593	132449525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_132449618_132450070_132450192_132450672_132450849_132451095_132451224_132451330_132451482_132453044_132453175_132453555_132453693_132454025_132454202_132455432_132455533_132455813_132456024_132456349_132456446_132456647_132456824_132456924_132457070_132461394_132461556_132470460
41104	chr19	+	2502	9	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	-12	2	intron_retention	FALSE	canonical	3	42	junction_1	85.2961751780231	2	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGGGTCTGTGCCGTG	4241	False	NA	NA	False	NA	NA	NA	46345361	46363693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360815_46362884
41105	chr7	-	2398	3	NIC	ENSMUSG00000059772.13	novel	2062	5	NA	NA	-4	0	intron_retention	FALSE	canonical	3	82	junction_1	3	357	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAAAGTTCTAGCCG	4983	False	NA	NA	False	NA	NA	NA	126294960	126289849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126291832_126291924_126291977_126294596
41106	chr7	+	2163	1	ISM	ENSMUSG00000053877.13	ENSMUST00000187040.7	10654	34	46027	12	25285	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTACAAGCATCCGTGTA	NA	False	NA	NA	False	NA	NA	NA	127158216	127160379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127158200_127160400
41107	chr8	-	2048	12	FSM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	6	24	6	-4	multi-exon	FALSE	canonical	3	124	junction_5	29.2453287927892	577	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTAAGGTTTTCTTTCTT	442	False	NA	NA	False	NA	NA	NA	122556302	122523075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
41108	chr12	+	1384	8	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	7	-1689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1575.67135027633	1	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908865	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930139_78931586
41109	chr17	+	1607	9	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-7	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1174.99316487374	2	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCGTGTCTGTGGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35460746	35472660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463266_35465869_35466174_35470222_35470337_35471722_35471833_35471939_35472085_35472182_35472331_35472448
41110	chr5	-	1991	11	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-14	0	intron_retention	FALSE	canonical	2	34	junction_7	119.623618069343	1	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	NA	False	NA	NA	NA	34794418	34790989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34792307_34792394_34792504_34792713_34792876_34792952_34793087_34793364_34793469_34793753_34793851_34793937_34794128_34794270
41112	chr11	+	2171	10	FSM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	-34	-1	-34	1	multi-exon	FALSE	canonical	3	46	junction_1	9.82940913537621	265	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGTGGCTTTTTATTTAG	NA	False	NA	NA	False	NA	NA	NA	53660806	53668150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_53661105_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
41113	chrX	+	1565	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	25	5	7	-5	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	2	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGCCTGACAATTTTT	NA	False	NA	NA	False	NA	NA	NA	74557929	74578543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
41115	chr5	-	3230	4	NNC	ENSMUSG00000063919.12	novel	6555	5	NA	NA	2226	550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGGTTCTCCCCCATCC	NA	False	NA	NA	False	NA	NA	NA	116603421	116576783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116576898_116577427_116577495_116599781_116599862_116600452
41116	chr3	+	3601	11	ISM	ENSMUSG00000028086.16	ENSMUST00000107678.8	4073	13	39456	158	-21879	-157	3prime_fragment	FALSE	canonical	3	58	junction_10	14.0499110317468	3	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAACAATCAGATTCAA	NA	False	NA	NA	False	NA	NA	NA	84810907	84886347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_84811387_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883692_84884579
41117	chr17	+	2163	4	NIC	ENSMUSG00000024014.9	novel	1578	5	NA	NA	30	-1	combination_of_known_junctions	FALSE	canonical	1	64	junction_1	812.184844861207	14	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGTTTTCCATTCAT	NA	False	NA	NA	False	NA	NA	NA	29710308	29715085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29710406_29710638_29711006_29712695_29712873_29713563
41118	chr17	+	1953	1	Antisense	novelGene_ENSMUSG00000066878.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	98	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCTCAAAGTTTTAACCC	NA	False	NA	NA	False	NA	NA	NA	90215917	90217870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_90215900_90217900
41119	chrX	+	1638	10	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	18	-731	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	228.871520376621	4	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAGGAGCCTAATCTA	NA	False	NA	NA	False	NA	NA	NA	150799441	150844959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812330_150844887
41120	chr13	-	1095	1	NIC	ENSMUSG00000021302.11	novel	1340	7	NA	NA	-975	-243	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTGACAACACTAACCATC	NA	False	NA	NA	False	NA	NA	NA	14235022	14233927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14233900_14235000
41122	chr2	+	2468	18	NNC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	2879	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	192.570806642477	1	75	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATACTAATGCAGATTTT	NA	False	NA	NA	False	NA	NA	NA	144401132	144432659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_144401362_144404051_144404110_144406485_144406573_144408684_144408920_144409020_144409046_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
41123	chr3	+	1930	3	NIC	ENSMUSG00000028102.16	novel	2424	4	NA	NA	-26	2	intron_retention	FALSE	canonical	3	279	junction_2	10.5	173	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTTTTATTCAATTCAAG	NA	False	NA	NA	False	NA	NA	NA	96542942	96552044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_96543060_96543989_96544649_96550890
41124	chr12	+	2736	22	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	-10	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	82.9351849214746	1	99	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAACGCTACTGGCTATTT	NA	False	NA	NA	False	NA	NA	NA	17398448	17480086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409161_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115_17479575_17479863
41125	chr18	+	2276	19	NIC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-10	-3381	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	165.307840403187	1	90	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAACCCAGCAGTGACCCCC	9040	False	NA	NA	False	NA	NA	NA	32970353	32996072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977
41126	chr5	+	2830	9	Antisense	novelGene_ENSMUSG00000029575.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGACTGACCCGGCTAGGC	1292	False	NA	NA	False	NA	NA	NA	114569294	114582069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_114571419_114573337_114573401_114574479_114574605_114574770_114574869_114575110_114575184_114575878_114575935_114576579_114576675_114580820_114580883_114581935
41128	chr7	+	3040	9	NIC	ENSMUSG00000099481.7	novel	3131	10	NA	NA	17	25	intron_retention	FALSE	canonical	2	6	junction_1	32.628352318191	3	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAGATGAGTGAATGAG	NA	False	NA	NA	False	NA	NA	NA	101714981	101731823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101715012_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101729812_101730689_101730818_101731247
41129	chr4	-	1548	4	NIC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	247.10906274131	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTCGTTTCCTTATGT	3	True	NA	NA	False	NA	NA	NA	41741320	41738498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41739581_41740549_41740643_41740822_41740977_41741101
41130	chr6	-	2399	12	NNC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	108.281008766561	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120334317	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319029_120325348_120325492_120327167_120327270_120330961_120331016_120334287
41131	chr2	-	2929	10	NIC	ENSMUSG00000027408.8	novel	2366	14	NA	NA	31	-1487	intron_retention	FALSE	canonical	3	131	junction_4	15.2096460620664	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	130239463	130234182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
41132	chr7	+	2140	7	NIC	ENSMUSG00000030990.19	novel	841	6	NA	NA	69	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	61.4638556840974	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTGAGGTAGGTATGTT	75	False	NA	NA	False	NA	NA	NA	101871715	101887769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101871938_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
41133	chr5	+	1949	2	NNC	ENSMUSG00000036599.11	novel	2331	2	NA	NA	-2291	-486	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	134	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCATTCCTGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	140489013	140510993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_140489265_140509295
41135	chr13	-	2722	17	NNC	ENSMUSG00000021635.15	novel	2839	17	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_16	50.5899184003098	207	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTCTTCTTATCCTTT	NA	False	NA	NA	False	NA	NA	NA	100787519	100753671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787406
41136	chr2	+	1638	13	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	-1	-438	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	293.125814379347	3	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	164675725	164681501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679446_164680806_164680870_164681070
41137	chr7	-	3788	14	FSM	ENSMUSG00000059146.13	ENSMUST00000039438.9	3977	14	182	7	-11	-7	multi-exon	FALSE	canonical	3	25	junction_10	6.48804088737217	42	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAAATGACTGCATCAGA	NA	False	NA	NA	False	NA	NA	NA	78227548	77950444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_77952496_77954039_77954175_78005774_78005964_78100634_78100738_78101638_78101704_78103070_78103095_78110028_78110326_78110792_78110935_78111333_78111477_78112532_78112691_78127611_78127681_78166476_78166549_78167166_78167242_78227283
41138	chr8	-	2307	9	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	68	junction_5	19.8899314981224	50	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCATTGCTATGTTCTCC	NA	False	NA	NA	False	NA	NA	NA	27713856	27687488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
41140	chr14	-	2599	8	NIC	ENSMUSG00000007589.10	novel	2001	9	NA	NA	3	406	intron_retention	FALSE	canonical	3	16	junction_1	115.741090369842	11	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGCTTTTTGTTGTTAG	NA	False	NA	NA	False	NA	NA	NA	55919240	55913668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55914739_55916970_55917063_55917322_55917388_55917471_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
41141	chr15	-	749	5	NNC	ENSMUSG00000022570.8	novel	1431	10	NA	NA	350	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	204.185424308397	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTGGACTCAGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	75798020	75796533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797858_75797977
41142	chr4	-	1932	10	NNC	ENSMUSG00000028879.5	novel	2934	9	NA	NA	47	-860	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	72.0649569811247	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTTGTCTACTGCC	6140	False	NA	NA	False	NA	NA	NA	132611773	132581671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132582712_132582806_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
41143	chr10	+	1746	3	NNC	ENSMUSG00000037171.7	novel	2095	3	NA	NA	999	-18	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	142	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTGTGACAATTCACC	NA	False	NA	NA	False	NA	NA	NA	61254749	61261099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61254943_61258760_61259477_61260262
41146	chr14	+	3798	4	NNC	ENSMUSG00000021840.18	novel	4542	4	NA	NA	15	-691	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.494107593803	1	226	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTAAAGGCATGTGGC	9645	False	NA	NA	False	NA	NA	NA	47535740	47559861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47535863_47547849_47548571_47556868_47557354_47557391
41147	chr15	-	1558	4	NNC	ENSMUSG00000072235.7	novel	1803	4	NA	NA	219	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	597.740932363028	1	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTCTTAAAAGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	98851365	98847730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98848880_98849068_98849218_98849346_98849573_98851331
41149	chr5	+	3484	10	ISM	ENSMUSG00000037210.17	ENSMUST00000094867.8	3696	17	16964	9186	-421	-1128	internal_fragment	FALSE	canonical	3	56	junction_7	13.1214648384307	23	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGTGTCTTAAATGTG	NA	False	NA	NA	False	NA	NA	NA	34600644	34633905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069
41150	chr7	+	1008	6	ISM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	37	2138	-24	-2138	5prime_fragment	FALSE	canonical	3	1088	junction_4	63.8842703644645	65	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGGCACATAGAACACATA	NA	False	NA	NA	False	NA	NA	NA	97345877	97365948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657
41152	chr2	-	1309	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	111	1122	7	-1114	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	2	42	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCAGAGAAACGTGATGG	3743	False	NA	NA	False	NA	NA	NA	154734744	154714451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
41153	chr14	+	3837	9	FSM	ENSMUSG00000036461.17	ENSMUST00000040131.13	4235	9	376	22	376	-22	multi-exon	FALSE	canonical	3	19	junction_5	6.51440711039769	39	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTGTTTTCAAGCA	NA	False	NA	NA	False	NA	NA	NA	79719009	79819912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_79719078_79773562_79773863_79798186_79798368_79802901_79803013_79804589_79804755_79806660_79806745_79808162_79808356_79810611_79811059_79817624
41154	chr5	-	1779	10	Antisense	novelGene_ENSMUSG00000038828.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGTCAGGGCAGAGACT	5501	False	NA	NA	False	NA	NA	NA	31032768	31028766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_31029198_31029413_31029497_31029842_31029949_31030028_31030111_31030382_31030487_31030836_31030979_31031297_31031389_31031653_31031704_31031878_31031993_31032192
41155	chr13	-	1213	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-479	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	222.502933813367	12	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTAACGGTGTCCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311589_34311661_34312219_34313228_34313338_34314159
41156	chr16	-	3242	22	NNC	ENSMUSG00000022962.16	novel	3276	22	NA	NA	13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	486.977321406886	1	178	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAACTTATCTAGCAT	NA	False	NA	NA	False	NA	NA	NA	91443787	91418290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421361_91422212_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
41157	chrX	-	2538	6	Antisense	novelGene_ENSMUSG00000072966.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	86	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGGCTGCGCAGGATGC	7388	False	NA	NA	False	NA	NA	NA	134744009	134739851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_134740010_134740491_134740620_134741139_134741256_134741365_134741730_134741963_134742051_134742324
41159	chr15	-	1490	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	18	-2	18	2	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	3	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTTGCTTGAATTTC	2681	False	NA	NA	False	NA	NA	NA	43146097	43113451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
41162	chr18	+	2310	6	NNC	ENSMUSG00000073568.3	novel	2257	5	NA	NA	31	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	143.662660423647	2	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTTCAGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	47054912	47067293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47054960_47057229_47057320_47059048_47059157_47059378_47059483_47061585_47061726_47065472
41163	chrX	-	3829	24	ISM	ENSMUSG00000031012.18	ENSMUST00000033321.11	4057	25	60525	-339	-1	339	3prime_fragment	FALSE	canonical	3	68	junction_7	23.69999960119	66	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAATGCCTTTGGGTCCTT	NA	False	NA	NA	False	NA	NA	NA	13652270	13387230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433_13492537_13543823_13543897_13549209_13549288_13580904_13581011_13652175
41164	chr9	+	1948	7	NIC	ENSMUSG00000032123.6	novel	2205	9	NA	NA	124	-294	intron_retention	FALSE	canonical	2	12	junction_3	96.4774009231638	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTAGTGTAGCATCCCCT	3926	False	NA	NA	False	NA	NA	NA	44238293	44244897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44238503_44238848_44239464_44240287_44240435_44243200_44243390_44243859_44243948_44244112_44244269_44244353
41165	chrX	-	1684	9	NIC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	0	-20	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	496.010190797528	460	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAACATGAAATAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	72140623	72129920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138429_72138689_72140586
41166	chr12	+	2886	6	NIC	ENSMUSG00000021203.16	novel	2791	6	NA	NA	72	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	32.5047688808888	71	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8316	False	NA	NA	False	NA	NA	NA	103355096	103372604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_103355368_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
41168	chr18	+	2612	15	FSM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	-6	14	1	-14	multi-exon	TRUE	canonical	3	205	junction_6	27.3663729300567	135	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGAAGAACCAACAAGGC	NA	False	NA	NA	False	NA	NA	NA	74349195	74354550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
41169	chr7	-	2173	1	NIC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	8904	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGGTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	143069493	143067320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143067300_143069500
41170	chr7	-	3723	2	Antisense	novelGene_ENSMUSG00000043831.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	107	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATCAGACCTGGAGTTA	NA	False	NA	NA	False	NA	NA	NA	66878211	66873354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_66873640_66874773
41173	chr6	+	2992	1	ISM	ENSMUSG00000038538.18	ENSMUST00000160583.8	14644	17	75043	779	17989	-779	mono-exon	FALSE	NA	NA	NA	NA	NA	28	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTATTATTTTAGTAAA	NA	False	NA	NA	False	NA	NA	NA	38485927	38488919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_38485900_38488900
41175	chr5	+	1887	8	NNC	ENSMUSG00000040584.9	novel	494	2	NA	NA	-1365	-572	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.7959130136838	3	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTACATAATTTTAGCC	NA	False	NA	NA	False	NA	NA	NA	8781922	8797998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_8782215_8782291_8782393_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
41176	chr7	-	2331	18	FSM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	25	2	25	-2	multi-exon	FALSE	canonical	3	272	junction_5	29.8825845289775	265	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTATAGTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	27055419	27041559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
41179	chr6	-	2830	3	Intergenic	novelGene_4204	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	2	98	14	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTGTACACTGAAGATTT	NA	False	NA	NA	False	NA	NA	NA	88670433	88644041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_88646658_88653637_88653742_88670323
41180	chr9	+	1744	6	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	-74	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	383.456177417968	21	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGAGTGGCTTTTC	294	False	NA	NA	False	NA	NA	NA	45281408	45307453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45306295
41182	chr10	-	3562	25	NNC	ENSMUSG00000034667.9	novel	6005	25	NA	NA	-152	-21	intron_retention	FALSE	non_canonical	0	0	junction_8	523.283118610014	1	137	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTACATAGTGAAATACA	NA	False	NA	NA	False	NA	NA	NA	121462389	121425544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439211_121440250_121440490_121441486_121441557_121442141_121442241_121442625_121442746_121442907_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447614_121449123_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462335
41183	chr10	+	3492	22	FSM	ENSMUSG00000035697.15	ENSMUST00000043311.7	3499	22	4	3	4	3	multi-exon	FALSE	canonical	3	46	junction_7	15.7468637773006	158	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACAGCCCGATCTTGTT	824	False	NA	NA	False	NA	NA	NA	79855490	79867299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79855633_79856523_79856668_79856784_79856870_79856955_79857029_79857222_79857290_79857379_79857518_79857628_79857694_79857910_79858022_79858108_79858190_79860496_79860686_79861242_79861381_79861989_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
41184	chr15	+	3270	17	ISM	ENSMUSG00000022142.9	ENSMUST00000230017.2	4391	34	-4	21031	-4	1071	intron_retention	TRUE	canonical	3	205	junction_4	23.8143043935782	3	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTAGTTTTTTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	8138815	8165489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146
41185	chr4	-	3576	18	FSM	ENSMUSG00000029053.17	ENSMUST00000030922.15	2641	18	-25	-910	-25	-682	multi-exon	FALSE	canonical	3	142	junction_14	28.8196876191202	178	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAAATAGAGCCTAAGAG	NA	False	NA	NA	False	NA	NA	NA	155445843	155345267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155440883_155440974_155441937_155442060_155445608
41187	chr14	+	1707	8	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-24	1288	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2591.85870583649	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTGTGCTGCAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	63359938	63380600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63379157_63379312_63379680
41188	chr11	+	2189	5	Antisense	novelGene_ENSMUSG00000020922.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.433012701892219	1	89	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCCCAGCAAGCGCCGC	3142	False	NA	NA	False	NA	NA	NA	102053323	102076085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102054994_102056187_102056299_102057922_102058024_102073686_102073821_102075912
41189	chrX	-	2308	11	Antisense	novelGene_ENSMUSG00000015291.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	92	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGCTTCTGTCACTGCC	NA	False	NA	NA	False	NA	NA	NA	73355418	73348889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73349047_73350183_73350291_73350448_73350578_73350758_73350841_73351276_73351477_73351735_73351866_73352676_73352780_73353566_73353736_73353990_73354141_73354243_73354297_73354390
41190	chr6	+	2901	11	Intergenic	novelGene_4258	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGCAGGAATGCACGGAATG	NA	False	NA	NA	False	NA	NA	NA	128203791	128277414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_128205449_128205536_128205686_128207556_128207695_128219362_128219540_128220333_128220472_128223282_128223340_128223780_128223827_128228504_128228568_128228886_128228952_128247831_128248084_128277255
41191	chr14	+	2044	17	Antisense	novelGene_ENSMUSG00000035726.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	47	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAATCCCGCACTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	52411317	52434679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52411363_52411455_52411591_52412700_52412829_52413818_52413971_52414066_52414183_52414405_52414502_52414611_52414677_52415499_52415613_52415739_52415815_52416930_52417020_52417555_52417731_52418473_52418626_52418993_52419143_52419614_52419770_52420471_52420563_52421306_52421478_52434542
41192	chr2	-	2239	13	NNC	ENSMUSG00000027187.11	novel	2613	13	NA	NA	94	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	258.26402296014	2	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACCGTGTTTGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	103315376	103284346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103285218_103287190_103287303_103290586_103290718_103293631_103293771_103297435_103297575_103298038_103298155_103298203_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
41193	chr2	+	1598	4	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	292	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	754.542392594493	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCTTTCTTTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	143757531	143785241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780622_143781898_143781949_143784046
41194	chr5	-	1900	5	NIC	ENSMUSG00000047215.15	novel	675	7	NA	NA	42	2	intron_retention	FALSE	canonical	3	9546	junction_4	1999.44146888575	2	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATATATTGATTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	65548681	65545718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65546023_65546413_65546495_65546820_65547827_65548081_65548198_65548288
41195	chr2	+	826	1	FSM	ENSMUSG00000084013.2	ENSMUST00000118388.2	846	1	196	-176	196	176	mono-exon	FALSE	NA	NA	NA	NA	NA	50	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	170127150	170127976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_170127200_170128000
41196	chr14	+	2658	17	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	-57	-274	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	264.632498712838	1	103	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATTGTATCACTCCC	NA	False	NA	NA	False	NA	NA	NA	122344622	122396742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382640_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
41197	chr13	+	1076	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1568	0	49	0	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	119	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	5602	False	NA	NA	False	NA	NA	NA	55469880	55473085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
41200	chr7	-	351	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26821.9744239681	14	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGTGTTTTTTCTATA	NA	False	NA	NA	False	NA	NA	NA	45109262	45107369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107451_45107546_45107708_45107958_45107980_45109174
41201	chr1	+	1935	2	Antisense	novelGene_ENSMUSG00000043716.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAAGGTGGCGCATGCGC	NA	False	NA	NA	False	NA	NA	NA	16172596	16174623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_16172822_16172913
41202	chr2	+	1503	10	NNC	ENSMUSG00000026664.8	novel	1438	9	NA	NA	-139	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	181.222051910813	2	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTATAATGTAGGCATATT	852	False	NA	NA	False	NA	NA	NA	4923690	4943529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940910_4942486_4942532_4942573_4942622_4943117
41203	chr8	+	2232	19	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_15	87.7483072890797	581	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4576	False	NA	NA	False	NA	NA	NA	3681143	3692795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3690748_3691207_3691734_3691821_3691897_3692056_3692645
41204	chr7	-	1108	2	Intergenic	novelGene_2916	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	34	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATTCTAATTGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	29623124	29621935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_29622358_29622438
41205	chr2	+	1186	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	3108	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	495.211963596286	1	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174855219	174859862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174855276_174858430_174858558_174858749_174858894_174859003
41206	chr2	-	2366	14	FSM	ENSMUSG00000027408.8	ENSMUST00000028897.8	2366	14	-2	2	-2	-1	multi-exon	FALSE	canonical	3	131	junction_8	18.681383322448	246	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCCTCTTGAGTTCCTAT	NA	False	NA	NA	False	NA	NA	NA	130239496	130232696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130233063_130233157_130233261_130234990_130235131_130235303_130235602_130235685_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
41207	chr13	-	2619	4	FSM	ENSMUSG00000046351.12	ENSMUST00000050101.9	4844	4	-23	2248	-23	1680	multi-exon	FALSE	canonical	3	31	junction_1	41.5772373621272	3	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTGTAATCTTGTGTATA	8983	False	NA	NA	False	NA	NA	NA	23553401	23539520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553304
41209	chr9	-	2836	3	FSM	ENSMUSG00000074284.7	ENSMUST00000128125.2	1241	3	-159	-1436	0	1436	multi-exon	FALSE	canonical	1	2	junction_1	0	99	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAAGTTGGAATCC	NA	False	NA	NA	False	NA	NA	NA	56979250	56962477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_56964423_56964552_56965086_56978892
41210	chr10	-	2805	7	FSM	ENSMUSG00000069520.7	ENSMUST00000217884.2	2799	7	-6	0	-6	0	multi-exon	FALSE	canonical	2	3	junction_6	78.0590944235342	2	94	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	115198412	115176646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197753_115198291
41211	chr17	-	3460	15	NNC	ENSMUSG00000003546.11	novel	2313	16	NA	NA	3	-3	intron_retention	FALSE	canonical	3	13	junction_14	29.2595702118058	4	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTCGGAGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	46956945	46941552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951631_46953039_46953271_46955174_46956080_46956900
41212	chr15	-	1390	13	NIC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	102	28	combination_of_known_junctions	FALSE	canonical	2	19	junction_12	706.153208706628	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAGCTCACTTCCTGGAT	NA	False	NA	NA	False	NA	NA	NA	81284142	81249622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685_81283889_81283989
41213	chr9	+	4592	6	Antisense	novelGene_ENSMUSG00000057969.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	70	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCAGGCTCTGAGGGG	NA	False	NA	NA	False	NA	NA	NA	107472839	107478373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_107476377_107476777_107476916_107477001_107477058_107477148_107477570_107477651_107477745_107478026
41214	chr19	+	518	1	ISM	ENSMUSG00000024924.15	ENSMUST00000167487.8	7971	19	33124	3233	11707	1136	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCGAGTATTGTTGAGT	NA	False	NA	NA	False	NA	NA	NA	27227880	27228398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_27227900_27228400
41215	chr14	-	4884	27	NNC	ENSMUSG00000033004.17	novel	14620	83	NA	NA	402	-15	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_15	8.39493014092469	63	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGATAAAGTCTAATATTT	NA	False	NA	NA	False	NA	NA	NA	103392297	103350861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_103351672_103354490_103354657_103355476_103355585_103357941_103358152_103359950_103360059_103360747_103360937_103361834_103361939_103364057_103364191_103364499_103364629_103365348_103365451_103367366_103367487_103368678_103368776_103371217_103371502_103372469_103372737_103373994_103374076_103376164_103376255_103376672_103376913_103378306_103378373_103380179_103380405_103380578_103380736_103381689_103381851_103383335_103383486_103384268_103384469_103385943_103386102_103389555_103389724_103391361_103391607_103392181
41216	chr3	-	2048	12	NIC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	-33	-26	intron_retention	FALSE	canonical	3	466	junction_6	119.095697336079	2	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAATAAATGTGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	127346879	127330388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
41217	chr9	+	3696	21	FSM	ENSMUSG00000032212.11	ENSMUST00000216816.2	3755	21	57	2	17	0	multi-exon	FALSE	canonical	3	66	junction_6	63.2220491600834	179	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGCTAATGTATTGAGA	NA	False	NA	NA	False	NA	NA	NA	70450092	70499514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480792_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
41218	chr2	+	1129	5	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	189	0	intron_retention	FALSE	canonical	3	310	junction_1	2554.7315416693	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	6011	False	NA	NA	False	NA	NA	NA	32851940	32854057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853866_32854002
41221	chr17	+	2729	14	NNC	ENSMUSG00000061126.6	novel	1599	12	NA	NA	-1531	-13	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	22.6347379252941	66	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCATATTAATTCAATGTC	NA	False	NA	NA	False	NA	NA	NA	32670165	32712281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32670364_32684452_32684556_32687434_32687658_32689777_32689923_32700047_32700102_32700753_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
41224	chrX	-	1731	7	Antisense	novelGene_ENSMUSG00000031432.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTCCCGCCCAGCGCGCG	NA	False	NA	NA	False	NA	NA	NA	139376712	139357373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_139357612_139365978_139366169_139368458_139368507_139369582_139369707_139372743_139372920_139374527_139374686_139375915
41226	chr15	-	2048	14	Antisense	novelGene_ENSMUSG00000022556.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCGCTAGGGCCAGACCT	NA	False	NA	NA	False	NA	NA	NA	76385172	76361642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76361916_76380167_76380279_76380650_76380790_76381035_76381161_76381818_76381893_76381965_76382030_76382151_76382249_76382353_76382489_76382619_76382662_76382703_76382892_76384147_76384254_76384330_76384397_76384464_76384535_76384614
41227	chr7	+	2446	5	NIC	ENSMUSG00000019737.15	novel	1006	7	NA	NA	-11	-9	intron_retention	FALSE	canonical	3	156	junction_2	33.5335652742144	3	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTTTCAAGAGATGTCT	NA	False	NA	NA	False	NA	NA	NA	30014284	30018456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30014512_30014686_30014826_30015654_30017468_30018097_30018157_30018248
41229	chrX	+	1120	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	49	74	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACACT	NA	False	NA	NA	False	NA	NA	NA	13068858	13070093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13068995_13069109
41231	chr14	-	3602	19	FSM	ENSMUSG00000021820.19	ENSMUST00000100837.11	3564	19	-38	0	-1	0	multi-exon	FALSE	canonical	3	16	junction_6	6.2610396328366	75	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTATTGCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	20844157	20784942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
41232	chr1	-	812	6	ISM	ENSMUSG00000025900.14	ENSMUST00000208660.2	4170	30	202402	148303	153475	142986	internal_fragment	FALSE	canonical	2	3	junction_5	2.82842712474619	10	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACTGTTGCACAGATCCAA	NA	False	NA	NA	False	NA	NA	NA	4277062	4218082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_4218187_4218834_4218968_4234077_4234165_4240427_4240628_4267756_4267865_4276882
41235	chr2	-	777	5	NNC	ENSMUSG00000050043.17	novel	2282	9	NA	NA	-7330	-2329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGGTTACCCGGGATC	NA	False	NA	NA	False	NA	NA	NA	84516814	84508778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84509004_84515532_84515791_84515945_84516042_84516532_84516628_84516711
41236	chr19	-	1577	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.93458700951	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902356	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15882625_15883145_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
41237	chr6	+	4319	13	ISM	ENSMUSG00000029772.18	ENSMUST00000149816.8	4903	15	8301	-1	1911	0	3prime_fragment	FALSE	canonical	3	103	junction_4	11.8110118110177	67	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCCTGAGAATACCA	1880	False	NA	NA	False	NA	NA	NA	29878588	29912309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_29878631_29880547_29880643_29883621_29883729_29886116_29886234_29890679_29890744_29891199_29891289_29894817_29894889_29896320_29896416_29903187_29903287_29906506_29906576_29906679_29906759_29908345_29908467_29909038
41238	chr5	-	1879	10	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-35	-259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	271.037922725872	12	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34093629	34055518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056247_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34085642_34085708_34093369
41239	chr5	+	3939	9	Antisense	novelGene_ENSMUSG00000029640.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	109	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAGACTGTCATTAGGAT	5017	False	NA	NA	False	NA	NA	NA	146671638	146731446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_146674593_146675910_146675989_146677103_146677301_146688503_146688591_146688704_146688782_146691181_146691410_146700010_146700225_146705746_146705830_146731425
41240	chr6	+	3848	13	NNC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	2	-438	intron_retention	FALSE	non_canonical	0	0	junction_4	69.7726466620138	1	134	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATGACCTGTGGGGTCT	9746	False	NA	NA	False	NA	NA	NA	86381265	86409771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86381505_86390785_86390883_86393284_86393379_86395859_86395928_86397294_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
41241	chr5	+	2474	8	NIC	ENSMUSG00000025340.15	novel	2690	9	NA	NA	14	-4	intron_retention	FALSE	canonical	1	2	junction_3	62.0388291840732	8	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTGATTGGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130200678	130243174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_130200736_130216241_130216428_130219717_130219885_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
41242	chr2	+	3651	6	NIC	ENSMUSG00000047909.12	novel	1485	7	NA	NA	-10	0	intron_retention	FALSE	canonical	3	29	junction_2	16.4	28	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGTTTATTCAAGCTCT	4758	False	NA	NA	False	NA	NA	NA	11783291	11795112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_11783714_11784487_11784635_11786287_11788561_11789101_11789264_11791034_11791114_11794544
41243	chr15	+	1731	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	-287	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	423.486422450591	1	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513527	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513604_100514793_100514934_100515775_100516052_100517248_100517418_100517567
41244	chr13	+	4277	17	NNC	ENSMUSG00000021611.10	novel	3730	17	NA	NA	0	-3	intron_retention	FALSE	non_canonical	0	0	junction_16	8.80318656794232	35	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTCTGTCATACTAAT	2123	False	NA	NA	False	NA	NA	NA	73775029	73797959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_73775368_73775469_73776794_73782270_73782467_73783538_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028_73797669_73797706
41245	chr15	+	2039	13	NNC	ENSMUSG00000022556.12	novel	2084	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	85.5025584412537	11	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATACATACATATATA	7148	False	NA	NA	False	NA	NA	NA	76361648	76385174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76361918_76380212_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
41246	chr9	+	2613	13	NIC	ENSMUSG00000032078.18	novel	2984	14	NA	NA	-17	117	intron_retention	FALSE	canonical	3	619	junction_8	53.3423820448827	5	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCCGCCTCTGCGTTCAT	NA	False	NA	NA	False	NA	NA	NA	46184473	46192899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
41247	chr1	+	1550	1	Antisense	novelGene_ENSMUSG00000025937.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTCCCACCATGATGAT	NA	False	NA	NA	False	NA	NA	NA	13695090	13696640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13695100_13696600
41248	chr2	-	2695	12	NIC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	6	1	intron_retention	TRUE	canonical	3	228	junction_1	23.6758411581395	4	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTCCTGATCCTTGA	3118	False	NA	NA	False	NA	NA	NA	155986094	155965568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
41249	chr14	-	2516	6	NNC	ENSMUSG00000021824.14	novel	764	6	NA	NA	3	1207	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	151.68045358582	1	57	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	NA	False	NA	NA	NA	21102260	21084874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21086772_21087180_21087319_21088040_21088249_21089195_21089330_21090119_21090206_21102207
41250	chr6	+	3661	26	NNC	ENSMUSG00000031865.17	novel	4118	28	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	127.143673063193	104	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGTGGCTCT	535	False	NA	NA	False	NA	NA	NA	83142943	83177098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83142977_83159505_83159752_83160040_83160120_83160282_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172589_83174765_83174931_83175563_83175644_83176169_83176260_83176655
41253	chr6	-	3291	12	NNC	ENSMUSG00000001521.13	novel	3374	11	NA	NA	0	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	12.2136625841313	70	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTCGCTTTCCCAGAAT	7517	False	NA	NA	False	NA	NA	NA	128332788	128298126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128299898_128299951_128300176_128300960_128301133_128301942_128302042_128302839_128302955_128303734_128303848_128304502_128304701_128304918_128305041_128310795_128310973_128311400_128311561_128314696_128314749_128332700
41254	chr6	-	2422	15	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	-4	280	combination_of_known_junctions	FALSE	canonical	3	16	junction_14	102.741601772086	1	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGCCCTTTAGAAGATTG	NA	False	NA	NA	False	NA	NA	NA	39354577	39313259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39354552
41255	chr1	+	2473	13	Antisense	novelGene_ENSMUSG00000026341.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	125	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGATCGCTCCCACTTCCGG	NA	False	NA	NA	False	NA	NA	NA	125320708	125363452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_125321828_125322803_125322890_125324842_125324975_125325195_125325282_125331129_125331300_125333576_125333725_125335027_125335136_125336255_125336356_125339006_125339112_125343992_125344115_125345982_125346044_125363021_125363197_125363391
41256	chr6	-	2876	8	NIC	ENSMUSG00000029922.16	novel	2992	8	NA	NA	28	-6	combination_of_known_junctions	FALSE	canonical	3	157	junction_7	1165.4745726921	1	92	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGTCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39396973	39374743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396773
41257	chr4	+	2207	8	ISM	ENSMUSG00000028614.15	ENSMUST00000030357.15	2354	17	20562	-1	6980	1	3prime_fragment	FALSE	canonical	3	529	junction_1	56.5349810438869	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACAGGAGCGTCTATGG	NA	False	NA	NA	False	NA	NA	NA	107245638	107271531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
41260	chr8	-	2606	5	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	341	333	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	46.3215662515852	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGTATGTGCCACCAG	NA	False	NA	NA	False	NA	NA	NA	70077855	70063174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70077727
41261	chr17	-	1360	5	ISM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	40	10823	40	-10823	5prime_fragment	FALSE	canonical	3	301	junction_4	30.5971812427223	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTTTAAAAAAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	87332794	87315506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
41263	chrX	-	1264	9	NNC	ENSMUSG00000002015.6	novel	1219	8	NA	NA	15	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	1216.6725563499	333	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGGTGTTTGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	72759766	72729789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72741751_72741818_72750602_72750751_72756050_72756152_72758398_72758535_72759723
41264	chr2	-	4418	4	FSM	ENSMUSG00000068134.14	ENSMUST00000122859.8	4181	4	-4	-233	-4	233	multi-exon	FALSE	canonical	2	3	junction_1	24.3903441732356	85	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATTTCACTAATCTTATA	NA	False	NA	NA	False	NA	NA	NA	149978602	149956092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_149960121_149961400_149961549_149961744_149961872_149978487
41265	chr7	+	1463	2	FSM	ENSMUSG00000038503.16	ENSMUST00000207373.2	815	2	675	-1323	675	1097	multi-exon	FALSE	canonical	3	1312	junction_1	0	21	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTGATAGGTATATTCT	NA	False	NA	NA	False	NA	NA	NA	83544935	83548385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83544971_83546957
41266	chr18	+	2082	3	NNC	ENSMUSG00000024317.16	novel	2769	6	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	236	6	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	21135027	21161281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141844_21159460
41267	chr16	-	3752	6	NIC	ENSMUSG00000022519.15	novel	5000	7	NA	NA	5	4	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	3.76297754444536	52	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTTGGCCTTCTTGATTG	NA	False	NA	NA	False	NA	NA	NA	4359673	4298075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4301149_4304140_4304375_4305356_4305474_4310157_4310254_4311642_4311745_4359543
41269	chr6	+	1515	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	260	0	260	0	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	3	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCTTCCCTGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	145561742	145567205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
41270	chrX	-	938	1	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTCCATTGTTGCAGCT	NA	False	NA	NA	False	NA	NA	NA	100492186	100491248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100491200_100492200
41271	chrX	+	3297	5	Antisense	novelGene_ENSMUSG00000054737.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAACGGCCTGGAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	20895006	20928215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_20897892_20902575_20902710_20902865_20903014_20926743_20926811_20928152
41272	chr15	-	1453	9	Antisense	novelGene_ENSMUSG00000023051.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	64	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCGCGGCCGGTAGGGC	NA	False	NA	NA	False	NA	NA	NA	102432041	102426895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_102427030_102427548_102427724_102428904_102429011_102429553_102429647_102430156_102430230_102430413_102430533_102430857_102430987_102431283_102431485_102431618
41273	chr19	+	2163	16	NNC	ENSMUSG00000032946.17	novel	2219	17	NA	NA	-24	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	90.6540677520871	680	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCAGCCTAAAACCCTCT	NA	False	NA	NA	False	NA	NA	NA	6451700	6465243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461_6453594_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458969_6463106_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
41274	chr9	+	1217	5	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCCAGGGTGTAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	78385739	78387320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386815_78386906_78387061_78387151
41275	chr1	-	2170	15	NNC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	80	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	54.4660538354686	3	34	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGGTTCTGGAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	36722184	36601778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36602102_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
41276	chr18	+	4385	12	NIC	ENSMUSG00000024561.12	novel	2838	16	NA	NA	19	-1567	intron_retention	FALSE	canonical	3	50	junction_11	13.8253569888003	1	116	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTTGCTTGTTTCCTGC	NA	False	NA	NA	False	NA	NA	NA	74401264	74412738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74410501_74410587_74410650_74411749
41277	chr17	+	960	5	ISM	ENSMUSG00000036552.20	ENSMUST00000226599.2	788	6	-15	342	4	-87	5prime_fragment	FALSE	canonical	3	116	junction_1	56.3488021168152	28	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTATTATTATTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	15261880	15265829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308
41278	chr17	+	2113	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	303	3	80	-3	multi-exon	FALSE	canonical	3	101	junction_1	120.5	367	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTGGTACAGAACTGCT	1908	False	NA	NA	False	NA	NA	NA	73144610	73157429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_73144704_73153273_73153439_73155574
41279	chr2	+	1719	2	ISM	ENSMUSG00000027575.20	ENSMUST00000132627.2	632	5	3787	-314	11	314	intron_retention	FALSE	canonical	3	252	junction_1	0	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGAACCCTGACTGCCAT	7866	False	NA	NA	False	NA	NA	NA	180612858	180615036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_180612908_180613366
41280	chr5	+	1385	11	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1344.23099205457	3	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	759	False	NA	NA	False	NA	NA	NA	77099626	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109029_77109072_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114619_77115198
41282	chr11	+	1767	9	NNC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	57.0294605883661	6	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3587	False	NA	NA	False	NA	NA	NA	100973466	100977445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975608_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
41283	chr12	+	2956	18	NNC	ENSMUSG00000007411.17	novel	2807	18	NA	NA	-25	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	152.205652173739	167	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCACTGTCTCCTACTG	711	False	NA	NA	False	NA	NA	NA	111540931	111622657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111540990_111541411_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111621703
41284	chr9	-	1450	10	NIC	ENSMUSG00000061559.16	novel	1290	11	NA	NA	1	2	intron_retention	FALSE	canonical	3	544	junction_9	195.079724126912	2581	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGCATTTGTGAACGT	5444	False	NA	NA	False	NA	NA	NA	54641780	54624445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
41285	chr14	+	3186	5	ISM	ENSMUSG00000022214.16	ENSMUST00000153638.8	4413	12	-456	5294	-5	-73	intron_retention	FALSE	canonical	3	125	junction_1	10.7354552767919	2	101	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGCCCTGGATTTAAGGT	NA	False	NA	NA	False	NA	NA	NA	55797984	55802227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827
41286	chr11	+	3644	5	ISM	ENSMUSG00000000282.13	ENSMUST00000000291.9	4590	6	5907	0	501	0	3prime_fragment	FALSE	canonical	3	77	junction_1	4.15331193145904	145	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCAGCATCTGGGTCAT	NA	False	NA	NA	False	NA	NA	NA	74727652	74736551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_74727775_74728256_74728299_74728437_74728550_74732986_74733180_74733376
41288	chr10	+	1257	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	107	0	38	0	multi-exon	FALSE	canonical	3	3777	junction_3	128.102654148929	40	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2159	False	NA	NA	False	NA	NA	NA	61484437	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
41289	chr15	+	3642	24	NNC	ENSMUSG00000023032.13	novel	374	2	NA	NA	-1006	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	9.13643695054198	35	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTTTCTCTGATACTCT	3509	False	NA	NA	False	NA	NA	NA	100678128	100713817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100678323_100680826_100680977_100681667_100681804_100682595_100682757_100685044_100685234_100686040_100686127_100686890_100687049_100687715_100687804_100688786_100688934_100689477_100689579_100693643_100693819_100694385_100694520_100695873_100696120_100697527_100697634_100698360_100698523_100701115_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330_100712427_100713499
41291	chr3	-	3816	2	FSM	ENSMUSG00000027881.15	ENSMUST00000125208.2	977	2	-1385	-1454	-852	0	multi-exon	FALSE	canonical	3	536	junction_1	0	8	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	4089	False	NA	NA	False	NA	NA	NA	108814286	108810122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108812079_108812426
41292	chr13	-	2524	10	FSM	ENSMUSG00000038991.18	ENSMUST00000035988.16	2843	10	132	187	132	7	multi-exon	FALSE	canonical	3	973	junction_6	103.236992125933	234	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTTTGCTTAAATG	NA	False	NA	NA	False	NA	NA	NA	38712334	38684241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043_38697141_38702958_38703065_38707304_38707455_38712163
41293	chr3	+	1736	16	FSM	ENSMUSG00000028109.15	ENSMUST00000107154.4	1444	16	-27	-265	-26	190	multi-exon	FALSE	canonical	3	12	junction_15	107.711260114974	44	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTGTGTTATTAACAAC	NA	False	NA	NA	False	NA	NA	NA	95466961	95495172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
41294	chr5	-	3392	5	FSM	ENSMUSG00000061898.11	ENSMUST00000049861.11	3335	5	-56	-1	-11	1	multi-exon	FALSE	canonical	3	25	junction_4	6.20483682299543	44	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTTATGTGTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	143166541	143157939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165298_143166303
41295	chr16	+	2953	21	Antisense	novelGene_ENSMUSG00000064565.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	93	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCCCGCGACGCTCGGG	NA	False	NA	NA	False	NA	NA	NA	10955207	10994202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_10955352_10956886_10957055_10958582_10958715_10959526_10959638_10963045_10963089_10963491_10963642_10964228_10964304_10965128_10965313_10966306_10966409_10967074_10967272_10968458_10968620_10969001_10969190_10969729_10969795_10970922_10971128_10973883_10974184_10976411_10976459_10976551_10976633_10976834_10976995_10978875_10979069_10982430_10982560_10994084
41296	chr7	-	1539	1	Intergenic	novelGene_3027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACTTGCTTTTCTCTAG	NA	False	NA	NA	False	NA	NA	NA	117723384	117721845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_117721800_117723400
41297	chr7	+	1772	7	NIC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_2	229.285423774726	18	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	138448326	138484786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_138448434_138470138_138470237_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
41298	chr1	+	2182	8	NIC	ENSMUSG00000052423.16	novel	583	4	NA	NA	10	0	combination_of_known_junctions	FALSE	non_canonical	1	52	junction_1	72.6585528766053	2	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097987	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
41300	chr7	+	822	1	NIC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	825	158	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAAAATCTCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	139729696	139730518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_139729700_139730500
41301	chr15	-	1977	15	NNC	ENSMUSG00000000934.10	novel	1903	14	NA	NA	52	19	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	32.3075147636596	183	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAGAACAAAGGCCCCAAC	NA	False	NA	NA	False	NA	NA	NA	75550597	75528864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547305_75547413_75547867_75547981_75550501
41302	chr10	-	4274	6	ISM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	7417	142	7374	114	3prime_fragment	FALSE	canonical	3	1125	junction_3	61.1738506226312	14	139	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACCACCATATACAGCATA	NA	False	NA	NA	False	NA	NA	NA	40115615	40099564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118
41303	chr4	+	3194	25	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	55	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	70.7393494142797	1	147	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAACTATCAGTTTTAT	3588	False	NA	NA	False	NA	NA	NA	108477191	108491307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482611_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484598_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488867_108489021_108489123_108490367_108490501_108490719
41304	chr15	-	3197	15	NNC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	5	-81	intron_retention	FALSE	non_canonical	0	0	junction_3	69.8363977377097	1	117	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGCATGTGCTCTTCT	NA	False	NA	NA	False	NA	NA	NA	79212371	79170512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79171096_79171815_79171984_79173330_79173481_79173778_79173916_79181498_79181650_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
41305	chr17	+	1474	6	NNC	ENSMUSG00000046711.17	novel	1030	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2255.93217983165	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775626	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27781878_27782040
41307	chr9	-	4726	1	Genic_Genomic	ENSMUSG00000037112.17	novel	NA	NA	NA	NA	114466	3056	mono-exon	FALSE	NA	NA	NA	NA	NA	14	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATTGTAATGTAAATGGG	3438	False	NA	NA	False	NA	NA	NA	50805770	50801044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_50801000_50805800
41308	chr7	+	1791	3	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	48.5	2	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	2715	False	NA	NA	False	NA	NA	NA	3341543	3347865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3341614_3341727_3341816_3346232
41309	chr11	-	1598	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	66	0	-55	0	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	637	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTTTTCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	29197343	29171531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
41310	chr3	+	2335	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	29	0	29	0	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	460	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATGGTATCTGATTCT	NA	False	NA	NA	False	NA	NA	NA	90155507	90160919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
41311	chr7	-	2199	1	NIC	ENSMUSG00000025486.18	novel	1606	8	NA	NA	7877	-1951	mono-exon	FALSE	NA	NA	NA	NA	NA	7	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTCTTTTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	140449082	140446883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140446900_140449100
41312	chr7	-	2175	2	ISM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	15137	-3	10314	-1	3prime_fragment	FALSE	canonical	3	237	junction_1	0	4	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCCTGTCTCTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	140446645	140443579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_140443997_140444887
41313	chr6	-	2365	11	NIC	ENSMUSG00000001518.13	novel	2320	12	NA	NA	1	-10	intron_retention	FALSE	canonical	3	237	junction_2	19.4216374180963	487	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATCTGATGCAGCTCTC	NA	False	NA	NA	False	NA	NA	NA	128401874	128386416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
41317	chr2	+	1270	6	NIC	ENSMUSG00000027332.12	novel	606	6	NA	NA	106	1	intron_retention	FALSE	canonical	0	0	junction_2	109.92906803935	2	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAAGCGAAGTAGTTGCT	NA	False	NA	NA	False	NA	NA	NA	118701964	118707448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_118702029_118702662_118702889_118703365_118703460_118703648_118703786_118705145_118705243_118706796
41318	chr10	-	3521	21	Antisense	novelGene_ENSMUSG00000036875.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	169	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGCTAGAGAAGCGCCAGC	NA	False	NA	NA	False	NA	NA	NA	62809392	62782829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_62782949_62784961_62785142_62786510_62786691_62789960_62790117_62791098_62791223_62792710_62792927_62793829_62793948_62794672_62794835_62794950_62795147_62795985_62796220_62797197_62797317_62797393_62797501_62798172_62798282_62799583_62799809_62800678_62800871_62802193_62802283_62802375_62802582_62803429_62803520_62805552_62805747_62807627_62807770_62809029
41319	chr15	-	1668	10	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	19	-97	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1928.24851121106	1	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGTGTCTGTTGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	31601867	31591042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593314_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
41320	chr2	+	1950	10	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-14	0	combination_of_known_splicesites	TRUE	canonical	3	19	junction_6	78.6625862093016	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	NA	False	NA	NA	NA	180367157	180384073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180377635_180377767_180378479_180378577_180378799_180378897_180381611_180381728_180382318_180382375_180382505_180382536_180383075
41321	chr7	+	1931	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	378	-335	-86	-2	multi-exon	FALSE	canonical	3	352	junction_2	28.9344085821708	418	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGGTTTTCTCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	126575463	126579669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
41322	chr17	-	2133	6	NIC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	0	-21	intron_retention	FALSE	canonical	3	702	junction_5	64.2040497165093	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGCAAGTTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	46558894	46554866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46555147_46555231_46555602_46555724_46555878_46555956_46557141_46558654_46558727_46558820
41323	chr19	+	4029	3	Antisense	novelGene_ENSMUSG00000025204.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	96	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTCACTCTGCACATGC	NA	False	NA	NA	False	NA	NA	NA	44538753	44543853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_44541295_44542108_44543497_44543753
41324	chr11	-	1937	9	NIC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	59	2	intron_retention	FALSE	canonical	3	103	junction_5	28.1236110768159	400	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCATTGTGTCTGTTCGG	NA	False	NA	NA	False	NA	NA	NA	69470091	69452581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
41325	chr4	-	2146	19	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	78	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.797308240746	11	51	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	108975141	108918846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919245_108919723_108919798_108920562_108920655_108921759_108921839_108922820_108922977_108923294_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
41326	chrX	+	1883	4	ISM	ENSMUSG00000015217.12	ENSMUST00000072699.13	1571	5	72	10	0	-10	intron_retention	FALSE	canonical	3	598	junction_1	145.112217113362	900	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCCTAAATTTCTGACTC	NA	False	NA	NA	False	NA	NA	NA	70599595	70604272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_70599615_70601658_70601814_70602038_70602179_70602703
41327	chr7	-	2938	5	NIC	ENSMUSG00000030741.16	novel	1100	9	NA	NA	-3	97	intron_retention	FALSE	canonical	3	390	junction_1	27.2889629704025	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCAGCTGGGTGACACT	NA	False	NA	NA	False	NA	NA	NA	125976586	125970938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125971320_125971583_125972063_125972941_125974376_125975845_125975912_125976008
41328	chr7	+	1529	11	NNC	ENSMUSG00000030826.20	novel	1772	11	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	129.85391792318	9	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTGGCTATCATGCTCT	2447	False	NA	NA	False	NA	NA	NA	45219768	45239132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234628_45234858_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
41329	chr9	-	2322	10	Antisense	novelGene_ENSMUSG00000037257.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGCGCTGCTTCCGCCTT	NA	False	NA	NA	False	NA	NA	NA	63549173	63509957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_63510054_63523967_63524157_63524267_63524366_63524788_63524878_63526427_63526513_63542585_63542668_63543663_63543765_63546320_63546425_63546872_63546904_63547726
41330	chr18	+	1845	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	55	965	4	-3	multi-exon	FALSE	canonical	3	1498	junction_1	106	3	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATATCATGAGAGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	46730825	46742313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46730868_46731707_46731768_46740570
41332	chr10	-	379	1	Intergenic	novelGene_3544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCACCTCCCTCTCTCTC	4102	False	NA	NA	False	NA	NA	NA	120359636	120359257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_120359300_120359600
41333	chr17	+	5609	20	NIC	ENSMUSG00000024052.18	novel	1112	11	NA	NA	-54	-4	combination_of_known_junctions	FALSE	canonical	3	15	junction_7	6.20606440967734	36	87	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGCATTGGGCTCCTT	NA	False	NA	NA	False	NA	NA	NA	71490663	71556808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_71490740_71521958_71522160_71529049_71529146_71531934_71532237_71536302_71536411_71537266_71537391_71538177_71538515_71540822_71540923_71544380_71544569_71545602_71545697_71546078_71546149_71547806_71547897_71548638_71548722_71549620_71549766_71550282_71550432_71550919_71551007_71551766_71551920_71552113_71552229_71553410_71553515_71553821
41334	chr4	+	2265	8	ISM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	1668	23	-577	-7	3prime_fragment	FALSE	canonical	3	348	junction_1	142.213550259991	4	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTCCTAGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	117409229	117531471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
41335	chr5	-	2538	13	NNC	ENSMUSG00000029169.12	novel	3010	14	NA	NA	2713	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	306.649456038795	2	120	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAATCTTGGCCCAAGTC	NA	False	NA	NA	False	NA	NA	NA	52342043	52307561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_52308121_52309151_52309314_52311374_52311570_52314796_52314920_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341823
41337	chr10	-	3018	11	NNC	ENSMUSG00000020184.16	novel	3099	12	NA	NA	35	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	206.45689622776	1	137	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGTGAAAGAGATTTGT	NA	False	NA	NA	False	NA	NA	NA	117546162	117524807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117525486_117525537_117526691_117528431_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850
41338	chr14	+	2904	13	NNC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	-2	1	intron_retention	FALSE	canonical	0	0	junction_7	50.0871462774854	4	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATAGAGGTGGATGTTC	NA	False	NA	NA	False	NA	NA	NA	52122389	52129318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52122481_52122607_52122762_52122844_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126679_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
41341	chr12	-	1360	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	71	-14	-71	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGAGTTTATTTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	111638731	111635865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
41342	chr19	-	1753	10	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	13	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	981.770333456008	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGTTTTTGTCTTCAA	NA	False	NA	NA	False	NA	NA	NA	8691230	8684976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685028_8685084_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
41343	chr2	+	2273	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	6	669	6	-669	multi-exon	FALSE	canonical	3	712	junction_2	38.5	1858	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTCTAGAGTTTTGA	8902	False	NA	NA	False	NA	NA	NA	181506135	181511954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181506363_181507738_181507827_181509996
41344	chr5	-	1737	2	NIC	ENSMUSG00000106864.4	novel	581	4	NA	NA	-1567	369	intron_retention	FALSE	canonical	3	656	junction_1	0	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTATTTTACCTGATATG	NA	False	NA	NA	False	NA	NA	NA	31318292	31316469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31317206_31317291
41345	chr2	-	2802	8	NNC	ENSMUSG00000039660.17	novel	2424	10	NA	NA	79	1	intron_retention	FALSE	canonical	0	0	junction_2	139.324316994997	2	105	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCACCTATGCTCACGTG	NA	False	NA	NA	False	NA	NA	NA	30067898	30063463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30064198_30064933_30065082_30065196_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30067495_30067604
41346	chr11	+	2319	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1352	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	17.6985781751385	12	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	5761	False	NA	NA	False	NA	NA	NA	70546675	70553339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70547607_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
41347	chr8	-	2633	3	NNC	ENSMUSG00000031803.9	novel	3055	3	NA	NA	-1753	-455	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	75.5	26	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCGGTAATATTTCTGTT	6768	False	NA	NA	False	NA	NA	NA	72156186	72143854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_72145800_72145960_72146544_72156081
41348	chr10	+	1816	12	Genic_Genomic	ENSMUSG00000085111.4	novel	483	3	NA	NA	9902	11517	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGATAGCTCCTGGCTACGC	NA	False	NA	NA	False	NA	NA	NA	85774539	85793587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_85774984_85777761_85777882_85778350_85778463_85779072_85779261_85779677_85779855_85782109_85782217_85783042_85783198_85785329_85785485_85787216_85787319_85789300_85789367_85791580_85791660_85793476
41349	chrX	+	1569	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	21	5	3	-5	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	3	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGCCTGACAATTTTT	NA	False	NA	NA	False	NA	NA	NA	74557925	74578543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
41350	chr5	-	1350	8	ISM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	1005	2	-8	0	3prime_fragment	FALSE	canonical	3	423	junction_6	64.4265124789793	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	5028	False	NA	NA	False	NA	NA	NA	137608744	137603366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658
41351	chr3	+	4628	26	Antisense	novelGene_ENSMUSG00000060671.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	144	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAAGAAAGTAACAGACAC	NA	False	NA	NA	False	NA	NA	NA	89847688	89868449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_89849112_89850635_89850776_89850920_89851169_89851417_89851500_89852303_89852528_89852788_89852981_89853230_89853375_89853487_89853595_89853740_89853847_89853931_89854096_89855109_89855229_89855355_89855538_89855688_89855854_89856263_89856318_89857113_89857325_89859981_89860183_89861512_89861588_89861737_89861905_89864316_89864398_89864605_89864675_89865114_89865189_89865284_89865344_89865593_89865695_89865815_89865930_89866297_89866359_89868384
41352	chr10	+	1346	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	55	0	55	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	3416	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	NA	False	NA	NA	NA	42378081	42411366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
41353	chr13	-	4145	1	ISM	ENSMUSG00000021339.5	ENSMUST00000021772.4	7035	11	28741	11	3161	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	39	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAATCAGCAGTCTGG	NA	False	NA	NA	False	NA	NA	NA	25175621	25171476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_25171500_25175600
41355	chr18	+	2997	15	NIC	ENSMUSG00000025429.10	novel	1056	14	NA	NA	9	872	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	7.97860659923186	64	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAATTTAATTTGTATTC	2219	False	NA	NA	False	NA	NA	NA	77877622	77971451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_77877687_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
41356	chr9	-	415	2	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	1818	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAAAAGTGTGTGT	NA	False	NA	6	True	NA	NA	NA	21667297	21666741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21667014_21667154
41357	chr2	-	3279	3	NIC	ENSMUSG00000027472.15	novel	1273	5	NA	NA	4	0	intron_retention	FALSE	canonical	3	235	junction_1	18	5	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8708	False	NA	NA	False	NA	NA	NA	152857278	152850809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152852259_152854300_152856006_152857153
41358	chr7	+	3048	21	FSM	ENSMUSG00000032812.19	ENSMUST00000098243.4	3693	21	24	621	24	71	multi-exon	FALSE	canonical	3	23	junction_1	25.1838738084513	109	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGAATGCTGGGGCTT	NA	False	NA	NA	False	NA	NA	NA	101043598	101061172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101043675_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
41360	chr5	+	3679	13	NNC	ENSMUSG00000018001.19	novel	3738	13	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	19.8676174269141	64	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAACTGCCTAAGACTC	NA	False	NA	NA	False	NA	NA	NA	143608255	143695998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143683468_143683552_143687073_143687187_143687351_143687501_143688568_143688681_143692838_143692916_143692993_143693066_143693149_143693305_143693587
41361	chr8	+	3098	7	Antisense	novelGene_ENSMUSG00000031955.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCTGCCCGCAGCCGGTC	NA	False	NA	NA	False	NA	NA	NA	112437105	112458747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112438029_112439234_112439322_112439969_112441067_112441912_112442029_112442243_112442407_112447328_112447967_112458673
41362	chr4	-	4216	6	NIC	ENSMUSG00000040928.16	novel	1053	7	NA	NA	4	-3	intron_retention	FALSE	canonical	3	52	junction_5	57.9931030382062	199	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCATATGTACTGTGGCC	1108	False	NA	NA	False	NA	NA	NA	129083415	129041800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129083334
41364	chr15	+	2115	11	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-43	1	intron_retention	FALSE	non_canonical	3	245	junction_2	20.9035882087263	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGCCCGCTGTCTTCTC	4783	False	NA	NA	False	NA	NA	NA	76215500	76219108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
41365	chr1	-	1902	15	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	68	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCCTTCTCTAAGAATT	NA	False	NA	NA	False	NA	NA	NA	59750656	59724145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729721_59731493_59731548_59731771_59731885_59735133_59735257_59737479_59737548_59742024_59742106_59743220_59743385_59743803_59743908_59744749_59744914_59745789_59745923_59746160_59746222_59748159_59748293_59749650_59749812_59750429
41366	chr2	-	2428	4	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5539	740	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	18.4451137763426	2	106	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCCGCCATACCCACCC	NA	False	NA	NA	False	NA	NA	NA	177021639	177005572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177007703_177008856_177008918_177009124_177009252_177021529
41367	chr2	-	3454	6	NNC	ENSMUSG00000027109.17	novel	3808	6	NA	NA	-264	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	209.343163251156	1	153	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTTTTTTTTCTTTTGA	3781	False	NA	NA	False	NA	NA	NA	72809894	72767009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801367_72801447_72801859_72809826
41368	chr13	-	2257	15	NNC	ENSMUSG00000021494.10	novel	2199	17	NA	NA	-13	0	intron_retention	FALSE	non_canonical	0	0	junction_1	188.134070735283	6	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTTCCTCTCTCACC	NA	False	NA	NA	False	NA	NA	NA	55684347	55678228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55678547_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682302_55683101_55683239_55683371_55683433_55683542_55683859_55684108_55684220_55684293
41369	chr11	-	3019	13	NNC	ENSMUSG00000017405.15	novel	2882	14	NA	NA	-10	-1	intron_retention	FALSE	canonical	0	0	junction_9	16.8745370306862	3	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGGCTTATGATCTCT	6279	False	NA	NA	False	NA	NA	NA	78067470	78056932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78057604_78057975_78058135_78058288_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78062125_78062932_78063069_78063276_78063510_78063750_78063957_78067385
41370	chr4	+	2317	14	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	7372	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	263.144840535762	1	83	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTATGGTTTGGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	108452590	108472033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108452842_108454326_108454503_108454551_108454676_108456519_108456636_108457165_108457282_108459152_108459251_108460584_108460691_108461170_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471502
41371	chr1	+	2824	25	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	316.360419348811	1	128	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	3046	False	NA	NA	False	NA	NA	NA	171910377	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915198_171916631_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925333_171927221_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944538_171949680
41372	chr10	-	2632	15	FSM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	-3	-2	-3	0	multi-exon	FALSE	canonical	3	78	junction_3	48.7011398265807	168	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCAGGCTCTGTGGGGA	NA	False	NA	NA	False	NA	NA	NA	126957003	126931518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
41373	chr1	+	1952	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	5	-30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	526.483409626785	1	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAATAAAATATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	59724148	59750639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743358_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
41374	chr1	-	2468	6	NNC	ENSMUSG00000039246.9	novel	1578	5	NA	NA	-17	-149	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	61.9593415071529	22	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTGACTTTCAGATTTA	NA	False	NA	NA	False	NA	NA	NA	185849524	185820076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_185820966_185821640_185821757_185832389_185832560_185833859_185834882_185846460_185846561_185849353
41376	chr18	-	931	1	Antisense	novelGene_ENSMUSG00000037815.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	122	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTCACGTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	35387834	35386903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_35386900_35387800
41378	chr10	-	2295	8	NIC	ENSMUSG00000019822.13	novel	1602	10	NA	NA	6	-2	intron_retention	FALSE	canonical	3	152	junction_6	16.0572953729412	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGCTCTACCTTGTTCC	NA	False	NA	NA	False	NA	NA	NA	41366359	41363169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365348_41365459
41379	chr2	-	2181	1	NIC	ENSMUSG00000038848.15	novel	3184	5	NA	NA	13822	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCAAGCTTGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	180548358	180546177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_180546200_180548400
41380	chr3	+	1915	10	NIC	ENSMUSG00000028048.12	novel	1779	11	NA	NA	9	-12	intron_retention	FALSE	canonical	3	268	junction_1	26.9187162389037	158	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGAAAGAGTTCGCTCCT	NA	False	NA	NA	False	NA	NA	NA	89110255	89115974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
41381	chr11	+	1150	5	NIC	ENSMUSG00000018286.7	novel	798	6	NA	NA	-7	4	intron_retention	FALSE	canonical	3	5742	junction_4	316.813332263653	456	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTGTGTGAAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	70416204	70418479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70416322_70416710_70417252_70417369_70417500_70418004_70418150_70418262
41382	chr11	+	3485	25	NNC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-3	-22	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_22	177.134713134445	39	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTTTCGTCTTCACT	6797	False	NA	NA	False	NA	NA	NA	115714871	115746582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745885_115745932_115746017_115746080_115746291
41384	chr8	+	2233	9	Intergenic	novelGene_1627	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATCCAATCTGTCTGGGC	NA	False	NA	NA	False	NA	NA	NA	43583058	43633311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43583726_43589312_43589419_43589530_43589596_43591602_43591834_43593678_43593775_43594002_43594358_43596972_43597564_43618052_43618099_43633235
41385	chr7	-	2254	12	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-21	-12	intron_retention	FALSE	canonical	3	1050	junction_5	58.5383959607102	763	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	NA	False	NA	NA	NA	16761755	16738576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
41386	chr7	-	1713	9	NIC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	2548	junction_5	202.535182128933	4	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875291	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_113864192_113865668_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
41387	chr18	+	1276	1	Intergenic	novelGene_4533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGGTGGTTGTCCTAA	2240	False	NA	NA	False	NA	NA	NA	35912572	35913848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_35912600_35913800
41388	chr4	+	2002	5	NNC	ENSMUSG00000028480.15	novel	2320	5	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	107.627540620419	636	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTAACTTCTTCCTCTAA	-23	True	NA	NA	False	NA	NA	NA	43957683	43979111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_43957774_43968111_43968193_43968571_43968676_43970499_43970578_43977462
41389	chr15	+	1929	12	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	-10	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	371.622842664552	2	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCGGCAAAGACTGGGACC	NA	False	NA	NA	False	NA	NA	NA	85220435	85347403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243662_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
41390	chr8	-	3307	28	NIC	ENSMUSG00000036686.17	novel	3471	29	NA	NA	19	-9	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	20.7894269846098	1	21	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACACTTGCCTCAGC	NA	False	NA	NA	False	NA	NA	NA	84874546	84859474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84859887_84859960_84860009_84860092_84860170_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
41391	chr13	-	1414	2	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	-236162	424	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATAAAACTTTGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	62801019	62549882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62551194_62800916
41392	chr15	-	2261	14	Antisense	novelGene_ENSMUSG00000098698.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	217	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTCCTGATTGGCTG	8580	False	NA	NA	False	NA	NA	NA	98981290	98972858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_98972973_98973229_98973379_98973487_98973676_98975165_98975323_98975405_98975545_98975709_98975789_98976123_98976202_98976661_98976783_98978745_98978829_98979069_98979131_98979714_98979849_98980004_98980582_98980784_98980981_98981105
41393	chr2	+	1507	1	ISM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	1579	27	1555	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	16	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTTACAGTAAACCACCT	NA	False	NA	NA	False	NA	NA	NA	28359656	28361163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28359700_28361200
41394	chr11	-	1960	12	NNC	ENSMUSG00000041231.16	novel	2088	11	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.0363541961666	9	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGTTATCTGTTTTATA	NA	False	NA	NA	False	NA	NA	NA	44361295	44345399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_44346301_44346396_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
41395	chr9	+	976	6	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGTCCAAGGCGACTGCC	NA	False	NA	NA	False	NA	NA	NA	78385743	78388952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386130_78386233_78386471_78386555_78386613_78387618_78387710_78387797_78387968_78388917
41396	chr4	-	1931	6	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	5	2	combination_of_known_splicesites	FALSE	canonical	3	25	junction_5	110.937099295051	111	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTCCAGGCTGATGCCC	NA	False	NA	NA	False	NA	NA	NA	130253731	130209173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130253668
41397	chr16	-	655	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	45	-85	45	85	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGGAAGGAAGGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	33827782	33827127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33827100_33827800
41398	chr17	-	3366	5	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	24	-1867	intron_retention	FALSE	canonical	3	53	junction_2	18.6329680942141	29	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTGTGTTCTATCATT	NA	False	NA	NA	False	NA	NA	NA	22580357	22558836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22559089_22559947_22562675_22577803_22577897_22578420_22578506_22580148
41399	chr13	+	1414	1	ISM	ENSMUSG00000078952.10	ENSMUST00000109431.10	2726	2	60624	0	12639	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	NA	False	NA	NA	NA	97632101	97633515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_97632100_97633500
41401	chr19	+	1297	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	-1	-300	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4338.40103104506	1	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTCCTGTCCTGCC	2017	False	NA	NA	False	NA	NA	NA	8945578	8955543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8945739_8946525_8946590_8946727_8946871_8947228_8947352_8949870_8950001_8950267_8950473_8954690_8954855_8954948_8955074_8955307_8955428_8955480
41402	chr4	-	1822	4	FSM	ENSMUSG00000003038.16	ENSMUST00000136859.2	927	4	-45	-850	2	-11	multi-exon	FALSE	canonical	3	1835	junction_2	320.62057880859	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTGGAATGCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	133695217	133692059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133693358_133693739_133694107_133694267_133694313_133695105
41403	chr7	-	4962	16	FSM	ENSMUSG00000059981.13	ENSMUST00000117394.2	4985	16	25	-2	25	2	multi-exon	TRUE	canonical	3	97	junction_14	9.03228776236797	82	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCCCAGGCTGCCTC	8458	False	NA	NA	False	NA	NA	NA	126483850	126468672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126470814_126471077_126471282_126471368_126471735_126473469_126473629_126473820_126474106_126474228_126474397_126475024_126475107_126475197_126475292_126477894_126477987_126478091_126478206_126478362_126478460_126478578_126478625_126479223_126479326_126479419_126479492_126479668_126479836_126483077
41404	chr8	+	1600	1	Antisense	novelGene_ENSMUSG00000031516.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGTCTCAGGAAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	34574003	34575603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_34574000_34575600
41405	chrX	-	3785	1	ISM	ENSMUSG00000031103.13	ENSMUST00000114958.8	6088	9	39323	16	39323	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	4	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTGAAAGGCTGAAGGTG	NA	False	NA	NA	False	NA	NA	NA	47503723	47499938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_47499900_47503700
41406	chr9	+	4052	16	Antisense	novelGene_ENSMUSG00000049493.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	48	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGGCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	95634698	95687495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_95636491_95636713_95636838_95643364_95643492_95643987_95644121_95647743_95647859_95651146_95651225_95655569_95655766_95657359_95657461_95658520_95658662_95658741_95658907_95664421_95664508_95666155_95666286_95667542_95667673_95668985_95669152_95677816_95677920_95687030
41409	chr11	-	1470	2	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCTTGGAGCCGCGCCA	5979	False	NA	NA	False	NA	NA	NA	120655212	120653678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120654167_120654230
41410	chr15	-	1407	13	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	66	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	486.62996436946	1	29	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTTCGTCCTGTGCT	2827	False	NA	NA	False	NA	NA	NA	77854931	77843203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846648_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
41411	chr11	+	1715	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	47	164	-1	-164	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	3	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGTCCCCCAAACCCT	NA	False	NA	NA	False	NA	NA	NA	4823997	4844036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
41413	chr16	+	2147	4	ISM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	127	3	-19	-3	intron_retention	FALSE	canonical	3	9815	junction_1	1814.47813127877	4	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTGGTGCTGATTGATT	NA	False	NA	NA	False	NA	NA	NA	55786764	55791795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872
41416	chr1	+	2171	13	NNC	ENSMUSG00000026353.10	novel	4113	13	NA	NA	155	569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	109.310973323308	1	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAGAATGATCTTATTT	249	False	NA	NA	False	NA	NA	NA	128172053	128205326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190527_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
41417	chr14	+	1918	10	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	-4	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	656.756583428399	3	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTTGGAAGGCCAAGC	9027	False	NA	NA	False	NA	NA	NA	55777858	55786311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782499_55782834_55782883_55785153_55785303_55785513_55785593_55785761
41418	chr2	+	618	5	ISM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	83	3456	-11	940	5prime_fragment	FALSE	canonical	3	1115	junction_3	116.267740581814	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTCCCGGATCCTGGGCT	8652	False	NA	NA	False	NA	NA	NA	72306585	72313781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698
41419	chr4	+	3225	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	-18	3	13	-3	multi-exon	FALSE	canonical	3	35	junction_1	17	96	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTGTGCTGATTTCTTT	-4	True	NA	NA	False	NA	NA	NA	5644102	5801098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_5644411_5729570_5729658_5798268
41421	chr10	+	2957	11	Antisense	novelGene_ENSMUSG00000020184.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	126	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGCCCCCTACCGTCCGC	NA	False	NA	NA	False	NA	NA	NA	117524807	117546634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117526690_117527048_117527131_117528488_117528642_117530808_117530974_117531857_117531959_117532291_117532345_117537469_117537523_117538108_117538241_117541059_117541137_117545852_117545934_117546456
41422	chr4	+	1614	14	Antisense	novelGene_ENSMUSG00000028800.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCGGATTCGGTGAGGCTT	NA	False	NA	NA	False	NA	NA	NA	129409904	129428458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129410037_129410261_129410429_129410691_129410743_129411150_129411302_129411585_129411716_129411804_129411917_129412622_129412762_129412839_129412950_129415207_129415295_129416148_129416294_129416749_129416895_129418038_129418114_129422719_129422842_129428410
41423	chr5	-	1579	8	ISM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	776	2	-9	0	3prime_fragment	FALSE	canonical	3	423	junction_6	64.4265124789793	1437	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	4799	False	NA	NA	False	NA	NA	NA	137608973	137603366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658
41425	chr6	+	1702	10	NIC	ENSMUSG00000068323.13	novel	5039	24	NA	NA	0	281	combination_of_known_junctions	FALSE	canonical	3	17	junction_8	193.365961486836	4	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGCAAGTGGCCAGTGGT	5726	False	NA	NA	False	NA	NA	NA	83254374	83280739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83277452_83277521_83280307
41426	chr9	-	2069	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	-10	-3	-10	0	multi-exon	FALSE	canonical	3	47	junction_2	23	252	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTGCACTTATTTAAC	NA	False	NA	NA	False	NA	NA	NA	20556073	20549081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20550495_20553319_20553393_20555490
41427	chr14	-	1285	6	NNC	ENSMUSG00000015759.12	novel	789	6	NA	NA	27	-104	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	210.694660587306	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCTTTGCTGTGCATTG	NA	False	NA	NA	False	NA	NA	NA	47025764	47013127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47014007_47016345_47016382_47016426_47016490_47017569_47017683_47021568_47021638_47025639
41428	chr16	+	1277	8	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1	132	intron_retention	FALSE	canonical	3	1315	junction_4	309.876670661746	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGGGATGTCTAGCTTTT	6055	False	NA	NA	False	NA	NA	NA	22926509	22930508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22929094_22929329_22929474_22929875_22930014_22930252
41429	chr14	-	1926	2	NIC	ENSMUSG00000021811.8	novel	781	3	NA	NA	21	-222	intron_retention	FALSE	canonical	3	896	junction_1	0	2	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGGTGGATTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	20438923	20434927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20435955_20438024
41430	chr7	+	2050	12	Antisense	novelGene_ENSMUSG00000030741.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGACACCGGAGCCCTA	NA	False	NA	NA	False	NA	NA	NA	125969243	125976590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_125969584_125969904_125970084_125970352_125970455_125970718_125970792_125971270_125971320_125971583_125971740_125971916_125972058_125972935_125973011_125973095_125973246_125974238_125974379_125975848_125975911_125976007
41431	chr2	-	1694	15	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	273.026275180202	50	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3999	False	NA	NA	False	NA	NA	NA	3513794	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492046_3492087_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
41432	chr2	-	1703	3	FSM	ENSMUSG00000018770.10	ENSMUST00000155474.2	770	3	-68	-865	-33	-6	multi-exon	FALSE	canonical	3	2058	junction_2	1124.5	33	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAATTCTTGCTGTGATT	NA	False	NA	NA	False	NA	NA	NA	73741703	73738796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73740286_73741298_73741405_73741595
41433	chr6	+	2254	18	NNC	ENSMUSG00000029777.11	novel	2380	17	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	973.120265898884	1582	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTGTGTTTCCATT	NA	False	NA	NA	False	NA	NA	NA	55014993	55056486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_55015054_55015178_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045153_55046324_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
41436	chr12	-	3281	20	FSM	ENSMUSG00000033530.9	ENSMUST00000062957.8	3446	20	165	0	30	0	multi-exon	FALSE	canonical	3	208	junction_10	15.649378488982	144	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGCTTTTGTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	100486920	100267028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_100268030_100291802_100292006_100298837_100298979_100314194_100314293_100321261_100321379_100339802_100339964_100342434_100342508_100348379_100348438_100350405_100350524_100352114_100352220_100353369_100353454_100369615_100369754_100373258_100373323_100381393_100381567_100385750_100385830_100413118_100413241_100432438_100432570_100461530_100461700_100466334_100466490_100486829
41437	chr11	+	1183	11	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	791.595256428435	30	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	NA	False	NA	NA	NA	106146979	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152817_106153034_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
41438	chr4	-	1369	9	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	31	2	intron_retention	FALSE	canonical	3	2352	junction_8	339.680272462208	137	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACTGTCCTCATTGATT	-3	True	NA	NA	False	NA	NA	NA	43031405	43028023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43028294_43028937_43029067_43029278_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
41439	chr19	+	2866	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	168	11	-15	-11	multi-exon	FALSE	canonical	3	572	junction_2	14.5859521458148	3408	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTGTATAATCTATTATATA	3711	False	NA	NA	False	NA	NA	NA	5012342	5017016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
41440	chr15	-	1508	9	NIC	ENSMUSG00000063354.8	novel	2063	11	NA	NA	72	-2	combination_of_known_splicesites	FALSE	canonical	3	24	junction_5	177.580791472501	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACACTGTCTTCTTGTA	8738	False	NA	NA	False	NA	NA	NA	76500976	76496584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76500772
41441	chr10	+	2589	5	NIC	ENSMUSG00000006732.15	novel	1791	6	NA	NA	2	49	intron_retention	FALSE	canonical	3	356	junction_2	31.2119768678628	5	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTAGGCTGTGTGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	126877828	126881817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126877940_126878928_126880521_126880624_126880739_126880894_126880997_126881147
41442	chr17	-	2770	8	NIC	ENSMUSG00000024118.15	novel	2160	9	NA	NA	-12	-13	intron_retention	FALSE	canonical	3	185	junction_7	22.454489119832	17	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATTCAAAAGTACCGG	3362	False	NA	NA	False	NA	NA	NA	24439739	24434040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24439285_24439490_24439590_24439664
41443	chr4	+	5923	6	ISM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	7	13100	7	-752	intron_retention	FALSE	canonical	3	46	junction_1	3.38230690505755	9	120	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCTACTCCGTAAGATG	-6	True	NA	NA	False	NA	NA	NA	49632072	49643787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624
41444	chr4	-	1705	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-57	-64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	351.560173449092	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTGTTACTCTCCATGA	2556	False	NA	NA	False	NA	NA	NA	129229099	129203373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215656_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
41445	chr15	+	1486	9	NIC	ENSMUSG00000032783.10	novel	2255	14	NA	NA	7	-1279	intron_retention	FALSE	canonical	3	79	junction_6	4.39992897669951	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGGTAGGTGTCTTCGC	NA	False	NA	NA	False	NA	NA	NA	98972874	98979206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071
41447	chr2	-	2119	14	NNC	ENSMUSG00000070730.12	novel	2249	13	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	96.3185051683726	1	35	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTTGACTGTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	118987429	118967480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_118967887_118967933_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973106_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
41448	chr19	+	1279	11	ISM	ENSMUSG00000024807.19	ENSMUST00000156550.8	3363	16	396	2938	-3	1120	5prime_fragment	FALSE	canonical	3	101	junction_1	11.9285372112426	6	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGAGAAGCTCATTCTGGG	1221	False	NA	NA	False	NA	NA	NA	6097087	6100801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6097159_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551
41449	chr12	+	2115	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10187	-512	intron_retention	FALSE	canonical	0	0	junction_2	38.7900330841141	1	109	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATACTGGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	17942202	17954164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17942310_17950660_17950833_17950987_17951049_17952389
41450	chr9	+	2184	9	NIC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	-3	2	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	220.716305469261	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	1167	False	NA	NA	False	NA	NA	NA	108394305	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108394440_108405787_108406118_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
41452	chr14	+	2975	12	NNC	ENSMUSG00000021981.11	novel	3037	11	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	95.8193030812435	2	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACCACATACTTTTGGTC	NA	False	NA	NA	False	NA	NA	NA	59678429	59786342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434_59784890_59784941
41453	chr6	+	2050	6	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGCTGGGCGCGCTCCGC	NA	False	NA	NA	False	NA	NA	NA	144963657	145021736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144965084_144978513_144978637_144980272_144980378_144985160_144985364_144993018_144993089_145021613
41454	chr19	-	2414	9	ISM	ENSMUSG00000025223.16	ENSMUST00000137771.2	2014	10	3117	-828	-364	-3	3prime_fragment	TRUE	canonical	3	657	junction_1	56.5486516196452	329	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCACTCATGTTCCCC	8410	False	NA	NA	False	NA	NA	NA	46024803	46021035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701
41455	chrX	-	2406	7	ISM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	-10	-1	0	1	intron_retention	FALSE	canonical	3	257	junction_1	21.338541031039	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGTGGCAAATAGTCCT	NA	False	NA	NA	False	NA	NA	NA	52799673	52785713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109
41456	chr7	+	3012	10	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	-2	-2	intron_retention	FALSE	canonical	1	6	junction_7	38.9884439986017	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATGTGTTGCCGATCTG	NA	False	NA	NA	False	NA	NA	NA	101714724	101732967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_101715012_101719103_101719199_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101729735_101729812_101730689_101730818_101731247
41458	chr7	-	1607	2	Antisense	novelGene_ENSMUSG00000108878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGATAGGTGCTGAGGGTC	NA	False	NA	NA	False	NA	NA	NA	83548394	83544800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83544969_83546955
41459	chr17	-	1949	16	NNC	ENSMUSG00000005823.10	novel	2405	17	NA	NA	0	30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	54.9878370389509	3	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCGGAGCCCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	57554663	57541913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545103_57549942_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
41460	chr2	+	2708	8	NIC	ENSMUSG00000068735.15	novel	2703	8	NA	NA	-7	-17	combination_of_known_splicesites	FALSE	canonical	3	62	junction_2	86.7591082085498	180	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAACAACCAATGAGA	NA	False	NA	NA	False	NA	NA	NA	93018007	93032077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_93018093_93027241_93027324_93027806_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
41461	chr2	+	1483	16	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	93	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1151.11574087443	1	44	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360311	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31368992_31371023_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390934_31391499_31391565_31400121_31400199_31404690_31404848_31408737_31408804_31410383
41462	chr8	-	4068	2	FSM	ENSMUSG00000049717.10	ENSMUST00000095476.6	5028	2	-11	971	-11	857	multi-exon	FALSE	canonical	2	7	junction_1	0	41	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAACTTTATGTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	10026310	10020019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_10023808_10026030
41463	chr11	-	3388	26	FSM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	16	6	-1	-6	multi-exon	FALSE	canonical	3	102	junction_19	25.7353919729232	358	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTGCTTGTGTGGGG	NA	False	NA	NA	False	NA	NA	NA	98620245	98595422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
41464	chr5	+	2909	10	NIC	ENSMUSG00000051674.16	novel	1243	8	NA	NA	-34	-1394	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	61.8261201742635	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGACCAACAACCCGAT	NA	False	NA	NA	False	NA	NA	NA	73649964	73716739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_73650420_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73712701_73712807_73714596_73714700_73714974
41465	chr4	-	1976	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	1	17	1	1	multi-exon	FALSE	canonical	3	614	junction_2	27	1218	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCAGTGTGCATGTATT	7669	False	NA	NA	False	NA	NA	NA	133972902	133970616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133972242_133972335_133972399_133972614
41467	chr9	+	1669	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	888.898766874766	5	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTGATCTTTGAGTTCAA	1178	False	NA	NA	False	NA	NA	NA	108437667	108442776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439054_108439372_108439584_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
41468	chr8	+	1689	6	NNC	ENSMUSG00000003037.17	novel	4550	8	NA	NA	-16	-2626	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	420.475635441579	7	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCTGCCCTCCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	72915186	72935122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72933863
41469	chr6	+	1774	6	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	956.616746665037	4	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	51447621	51460684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458796_51459459
41470	chr5	-	1936	6	NNC	ENSMUSG00000029500.17	novel	2044	6	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	256.315898843595	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTTTATTTGTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	110417738	110407022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417608
41471	chr6	+	2612	3	FSM	ENSMUSG00000042097.18	ENSMUST00000079405.15	3158	3	18	528	11	-2	multi-exon	FALSE	canonical	3	13	junction_1	2	37	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCGTCCAATGTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	117840055	117849724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117840104_117846178_117846235_117847216
41472	chr10	+	2284	3	ISM	ENSMUSG00000020284.17	ENSMUST00000149074.8	2238	6	2	2309	2	52	intron_retention	FALSE	canonical	3	56	junction_1	1.5	8	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAATGGCTGTCCCAAGCC	NA	False	NA	NA	False	NA	NA	NA	77814489	77818780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_77814616_77815586_77816382_77817417
41473	chr9	+	997	7	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-148	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7205.73498448747	556	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTGTGTGACTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64084245_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
41474	chr5	+	3348	10	Fusion	ENSMUSG00000087250.3_ENSMUSG00000086234.4	novel	831	2	NA	NA	-14173	28355	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	158	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGAGGCCGGGTGGCGGCG	NA	False	NA	NA	False	NA	NA	NA	74160702	74229019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_74162797_74163340_74163423_74163814_74164013_74166483_74166571_74177322_74177391_74189794_74190028_74192962_74193179_74197693_74197776_74209329_74209506_74228907
41475	chr4	+	3589	4	NNC	ENSMUSG00000029066.13	novel	764	4	NA	NA	-37	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	608.124987153134	8	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGAGTTATTTCCTG	NA	False	NA	NA	False	NA	NA	NA	155888066	155893286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155888200_155888289_155891258_155891305_155891443_155892935
41476	chrX	+	3471	20	NNC	ENSMUSG00000079487.12	novel	6816	45	NA	NA	43	84	intron_retention	FALSE	canonical	0	0	junction_7	35.2671639515512	1	96	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCCCTTTTTCTTCTCCC	NA	False	NA	NA	False	NA	NA	NA	100317678	100327618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321062_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100325140_100325343_100325489_100325660_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273
41477	chr15	+	1502	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	0	12	0	3	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	782	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	4	True	NA	NA	False	NA	NA	NA	10486103	10493763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
41478	chr5	+	4200	1	NIC	ENSMUSG00000092354.8	novel	461	4	NA	NA	-26	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTCAATTTCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	101987994	101992194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_101988000_101992200
41479	chr10	+	2647	13	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	29	-4	combination_of_known_junctions	FALSE	canonical	3	35	junction_5	23.1336695460678	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATTCATTGTATTCATT	NA	False	NA	NA	False	NA	NA	NA	23672912	23703862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
41480	chr10	-	2273	13	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	3116	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	18.7475924380231	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	NA	False	NA	NA	NA	42351160	42188580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42351097
41481	chr7	-	511	1	Intergenic	novelGene_3052	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCCTGGAACTCACTCT	NA	False	NA	NA	False	NA	NA	NA	140465359	140464848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_140464800_140465400
41482	chr17	+	3717	19	Antisense	novelGene_ENSMUSG00000001229.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	12	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTCTTGGGCGCGGCCC	NA	False	NA	NA	False	NA	NA	NA	56495267	56525597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_56495379_56496321_56496464_56496987_56497145_56497685_56497828_56498009_56498160_56501415_56501552_56501907_56502061_56503087_56503170_56505973_56506137_56506257_56506434_56507582_56507684_56509840_56509905_56511173_56511300_56512192_56512306_56512450_56512619_56512693_56512870_56513775_56513889_56518578_56518836_56524410
41483	chr5	-	1863	5	NNC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	465.72819326298	44	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184779_100186635
41484	SIRV6	-	1272	10	Genic_Genomic	SIRV6C_SIRV6B	novel	276	1	NA	NA	-9278	545	multi-exon	TRUE	non_canonical	0	0	junction_1	0	66	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTCCCTCTTCGGAAAGA	NA	False	NA	NA	False	NA	NA	NA	11825	999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV6_-_1185_1466_1535_1640_1735_2469_2619_2738_2828_3105_3164_10723_10825_11035_11109_11205_11399_11563
41485	chr7	-	2252	12	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	712	junction_7	46.793197216958	2	94	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAGCCTGGTTTTTGA	7990	False	NA	NA	False	NA	NA	NA	126641578	126626902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
41486	chr14	+	3036	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	-9	10	0	-10	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	1	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACCACATACTTTTGGTC	NA	False	NA	NA	False	NA	NA	NA	59678420	59786342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
41488	chr16	-	3262	17	FSM	ENSMUSG00000022892.12	ENSMUST00000226232.2	3120	17	54	-196	23	2	multi-exon	FALSE	canonical	3	10	junction_10	13.879925927396	72	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGGCAAGACGTTTCTT	7408	False	NA	NA	False	NA	NA	NA	84970569	84751335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
41489	chr4	-	1478	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	12	8	12	3	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	1375	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTGAGATTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	106924053	106913078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
41490	chr3	+	1325	11	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-59	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	433.882299708112	36	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCGTGCTGGATTTGTC	NA	False	NA	NA	False	NA	NA	NA	32762854	32781118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766299_32772578_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
41491	chr11	+	2744	5	NIC	ENSMUSG00000020877.12	novel	1552	7	NA	NA	-9	-4	intron_retention	FALSE	canonical	3	106	junction_1	11.4017542509914	4	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAACTGGATCTCAAGTC	NA	False	NA	NA	False	NA	NA	NA	96920754	96924780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_96920882_96921241_96921416_96921705_96923115_96923580_96924326_96924491
41492	chr15	-	2187	3	NIC	ENSMUSG00000014313.16	novel	503	4	NA	NA	14	0	intron_retention	FALSE	canonical	3	8539	junction_2	141	55	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTGCTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	35938339	35932125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_35932244_35935430_35937431_35938270
41494	chr8	+	397	1	Intergenic	novelGene_1725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAGGGAAAGACACACGT	NA	False	NA	NA	False	NA	NA	NA	108130489	108130886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_108130500_108130900
41495	chr2	-	3325	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-9	-2	intron_retention	FALSE	canonical	3	71	junction_3	34.703881267086	4	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAGATGATTTGATCCAA	8842	False	NA	NA	False	NA	NA	NA	93841108	93810983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93837227_93838383_93838488_93838787_93838938_93841027
41498	chr17	-	2123	11	NNC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	1	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	969.975546083508	1	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGTGCATCCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	45906440	45896126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899261_45899313_45899927_45900001_45900133_45900232_45900339_45901052_45901182_45901265_45903104_45903142_45906359
41499	chr5	+	3521	9	NNC	ENSMUSG00000041264.17	novel	3757	9	NA	NA	-13	0	intron_retention	FALSE	canonical	0	0	junction_4	132.984961555809	1	150	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	149121577	149152244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131262_149135493_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
41500	chr6	+	2865	5	NNC	ENSMUSG00000042097.18	novel	2812	4	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	9.98436277385793	70	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGTGACCGTCCAATG	NA	False	NA	NA	False	NA	NA	NA	117840050	117849717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117840104_117843355_117843536_117846178_117846235_117846362_117846438_117847216
41503	chr7	+	2570	8	FSM	ENSMUSG00000030704.15	ENSMUST00000107048.8	2617	8	45	2	45	-2	multi-exon	FALSE	canonical	0	0	junction_1	284.236032988394	352	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGGTTCACATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100256661	100290473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100256728_100275758_100275818_100277610_100277665_100278872_100278979_100280948_100281061_100283851_100283946_100285901_100285969_100288461
41504	chr6	-	1572	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	-8	-91	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	4842.2987051606	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGACTAAAGTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	87828050	87820154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821116_87822091_87822303_87822442_87822540_87822637_87822776_87827885
41505	chr7	-	1697	1	NIC	ENSMUSG00000030872.15	novel	4251	18	NA	NA	9086	498	mono-exon	FALSE	NA	NA	NA	NA	NA	7	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAATTCACCATGTAGACC	672	False	NA	NA	False	NA	NA	NA	121589186	121587489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121587500_121589200
41506	chr7	-	834	1	ISM	ENSMUSG00000030872.15	ENSMUST00000124566.2	4251	18	33551	61	11433	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	24	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTTCAACTTCATTTCC	3019	False	NA	NA	False	NA	NA	NA	121586839	121586005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_121586000_121586800
41507	chr8	-	1889	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	29	1001	29	-1001	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	4	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATTATTCTGTGTCACA	NA	False	NA	NA	False	NA	NA	NA	86281944	86265262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
41508	chr15	+	2565	10	NIC	ENSMUSG00000022434.9	novel	2518	9	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	67.2724330384562	212	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	84921343	84947031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84944289_84944391_84945732
41509	chr13	+	2704	5	NNC	ENSMUSG00000000078.8	novel	1115	5	NA	NA	29	-1379	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	82.5602053049773	14	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAATGTCAATATCTTGCT	NA	False	NA	NA	False	NA	NA	NA	5911509	5919014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_5911842_5914766_5914820_5914932_5915344_5916637_5916762_5917230
41510	chr11	-	871	7	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7335.59361378932	2	10	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGTTTCTATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	33113074	33102510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106010_33110827_33110922_33111105_33111226_33111547_33111628_33112921
41511	chr3	+	2797	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	138	18	-17	-18	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	1	134	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGACAATACTATTATC	NA	False	NA	NA	False	NA	NA	NA	19242411	19274963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
41512	chr11	+	2419	11	NNC	ENSMUSG00000057522.16	novel	2881	11	NA	NA	-38	-394	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	96.3124602530742	4	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTGTGGTATCTCTGGT	NA	False	NA	NA	False	NA	NA	NA	95304867	95383838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381222_95382596
41513	chr15	-	1503	9	NNC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	472.636074982645	73	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	NA	False	NA	NA	NA	75952755	75942030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942597_75942822_75943569_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
41514	chr12	-	572	2	ISM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	-53	8113	-53	-4331	5prime_fragment	FALSE	canonical	3	97	junction_1	0	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAGAAAGTCTGTTGGCT	7616	False	NA	NA	False	NA	NA	NA	87346532	87333524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_87333912_87346347
41515	chr4	+	1298	8	NNC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	51	1	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_3	161.236041952442	6	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGAAGCCTAGGTGGTC	NA	False	NA	NA	False	NA	NA	NA	152262641	152356305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152262798_152291220_152291339_152302192_152302350_152314243_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
41516	chr8	-	2761	6	NIC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	2719	-14	intron_retention	FALSE	canonical	3	75	junction_1	10.762899237659	23	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAACAAACAAACAAATAAA	7727	False	NA	NA	False	NA	NA	NA	70684057	70672861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70673528_70674755_70674894_70675167_70676340_70677549_70678124_70682177_70682261_70683929
41517	chr16	+	3036	20	NNC	ENSMUSG00000022842.19	novel	3152	19	NA	NA	166	1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	10.668513228901	39	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCCTGTCTCTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	20448766	20464666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20452968_20453041_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
41518	chr13	-	1206	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	997	-477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.248046156705	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAACGGTGTCCTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	34313340	34311207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311870_34312193_34312515_34312854_34312966_34313228
41519	chr4	+	1426	10	NNC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	55	-3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	192.007008616937	2294	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACCCATGAAGCCTAGGT	NA	False	NA	NA	False	NA	NA	NA	152262645	152356301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152344020_152344053_152345302_152345488_152355930
41520	chr2	-	2413	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	247	-27	-3	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	977	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	NA	False	NA	NA	NA	155771983	155688813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
41521	chr2	+	3389	26	NIC	ENSMUSG00000042359.19	novel	8037	27	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	8.49621092016906	41	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTTCTTATAGCTACG	NA	False	NA	NA	False	NA	NA	NA	76236904	76426386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76390529_76390605_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
41522	chr12	-	5745	6	FSM	ENSMUSG00000025323.11	ENSMUST00000222314.2	2677	6	-50	-3018	22	-3	multi-exon	FALSE	canonical	2	11	junction_4	4.07921561087423	32	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAACCTTCTCATCACGGT	NA	False	NA	NA	False	NA	NA	NA	118265153	118198670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_118202130_118218144_118218345_118225461_118225691_118262372_118263928_118264433_118264544_118264961
41524	chr7	+	872	6	ISM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	13	3349	2	-40	intron_retention	FALSE	canonical	3	164	junction_5	24.0449578914167	1	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCCCAGAAATCGGT	582	False	NA	NA	False	NA	NA	NA	28092388	28095464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195
41526	chr11	-	1631	7	NIC	ENSMUSG00000040904.11	novel	1688	8	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	53	junction_1	228.10042866149	4483	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	70130673	70126031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70126295_70126822_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130481
41527	chr4	-	2177	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	28	936	-22	-936	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	1905	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACAAAAGAGGAGATATTT	NA	False	NA	NA	False	NA	NA	NA	108690783	108672427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
41528	chr3	+	1305	9	NNC	ENSMUSG00000041355.14	novel	495	5	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2198.53468246466	2	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGATGTGTTTGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	88483255	88495721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88483288_88483545_88483689_88483806_88483911_88484401_88484504_88487186_88487342_88488331_88488380_88491083_88491193_88494171_88494250_88495187
41529	chr5	+	2677	6	FSM	ENSMUSG00000040557.15	ENSMUST00000047196.14	2808	6	-23	154	-23	-154	multi-exon	FALSE	canonical	3	37	junction_1	28.2460616723819	348	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGTAGAGCACTTTGGG	3389	False	NA	NA	False	NA	NA	NA	134961198	134971337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
41531	chr13	-	2015	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_14	2569.66919672791	1	88	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5358	False	NA	NA	False	NA	NA	NA	58549723	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549623
41532	chr11	-	1704	6	NNC	ENSMUSG00000025132.14	novel	2150	6	NA	NA	1171	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1653.31308589753	2	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120471035	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469318_120469363_120469883_120469929_120470257_120470341_120470406_120470493_120470877_120471007
41533	chr15	+	2041	4	Antisense	novelGene_ENSMUSG00000022234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGCATGCGCAGTGCAGAC	NA	False	NA	NA	False	NA	NA	NA	31594378	31601950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_31595990_31597556_31597721_31598144_31598207_31601746
41534	chr1	+	5199	27	NIC	ENSMUSG00000033276.19	novel	5245	27	NA	NA	-8	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	4.85713042611904	31	77	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAAATGAAAGATGAGT	NA	False	NA	NA	False	NA	NA	NA	74640630	74676040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74640773_74641187_74641361_74642296_74642438_74642555_74642634_74644547_74644679_74648170_74648421_74649930_74650025_74650247_74650418_74650559_74650748_74651844_74651945_74655734_74655879_74661354_74661535_74662443_74662542_74662988_74663095_74664651_74664803_74665171_74665300_74665701_74665807_74666553_74666653_74666743_74666833_74667076_74667141_74667300_74667412_74670744_74670820_74671887_74672060_74672300_74672449_74672665_74672814_74673168_74673916_74674873
41535	chr12	+	2638	19	NNC	ENSMUSG00000021144.15	novel	717	3	NA	NA	-15787	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	162.054946100252	440	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACCCCACCAAGCCCT	4344	False	NA	NA	False	NA	NA	NA	113079164	113100815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_113079260_113080607_113080702_113083830_113083882_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
41536	chr7	+	3339	4	FSM	ENSMUSG00000030469.11	ENSMUST00000058104.8	4494	4	-29	1184	-29	-1184	multi-exon	FALSE	canonical	3	26	junction_1	1.24721912892465	42	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTGGCTGGATAGTAATA	7238	False	NA	NA	False	NA	NA	NA	43229004	43241475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43229191_43233491_43233721_43235777_43235905_43238678
41537	chr2	-	737	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	63	-50	63	50	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75022103	75021366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75021400_75022100
41538	chr12	-	1527	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	51	0	51	0	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	474	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	False	NA	NA	False	NA	NA	NA	55539381	55536194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
41539	chr9	-	1811	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	758	-73	1	-12	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTAGCAGCTCAGCTTG	9826	False	NA	NA	False	NA	NA	NA	57672385	57657918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
41540	chr5	-	2596	6	NNC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	273	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	394.209385986686	1	93	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTCGTGTGCTGTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	114020219	113980498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982409_113987659_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018
41541	chr6	+	2096	4	NNC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	31	-11	intron_retention	FALSE	non_canonical	0	0	junction_2	71.1867653117878	2	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTGCTTTATATGTGTG	NA	False	NA	NA	False	NA	NA	NA	125020947	125026216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125020989_125023866_125024277_125024441_125025201_125025330
41542	chr15	+	1230	4	NNC	ENSMUSG00000042406.9	novel	659	4	NA	NA	28	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	649.595429650042	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATGTGGGTTTTCAGT	4512	False	NA	NA	False	NA	NA	NA	80139751	80141740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140660_80140834_80141082_80141144
41544	chr9	-	6224	10	Antisense	novelGene_ENSMUSG00000102330.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	66	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGGAGGTCTTAGGGGCA	NA	False	NA	NA	False	NA	NA	NA	72823962	72764076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72764366_72798060_72798155_72799090_72799276_72799507_72799636_72801103_72801275_72811984_72812172_72813430_72813546_72814971_72815145_72817918_72818022_72819183
41545	chr11	-	4351	17	FSM	ENSMUSG00000052921.14	ENSMUST00000108671.2	4372	17	15	6	15	-6	multi-exon	FALSE	canonical	2	6	junction_4	3.00974978195863	31	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGCAGTGGTCTAAAA	6000	False	NA	NA	False	NA	NA	NA	68848291	68833988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_68835656_68837191_68837297_68837386_68837470_68837809_68837963_68838061_68838223_68838401_68838495_68838591_68838667_68840796_68840927_68841825_68841979_68842157_68842319_68842444_68842657_68842736_68842796_68844312_68844368_68844637_68844989_68845243_68845900_68847671_68847804_68848186
41546	chr8	+	1904	10	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	56	0	intron_retention	FALSE	canonical	3	307	junction_3	29.6964062339179	4	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	8904	False	NA	NA	False	NA	NA	NA	3685471	3692795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897
41547	chr13	+	2107	12	FSM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	-12	0	4	0	multi-exon	FALSE	canonical	0	0	junction_7	31.8161038282489	196	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	108295275	108331519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
41548	chr7	+	3946	4	NNC	ENSMUSG00000054715.12	novel	2620	3	NA	NA	62	-138	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1.69967317119759	11	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCCATGTCTCCTCTTG	NA	False	NA	NA	False	NA	NA	NA	12631855	12642872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12631871_12631962_12632059_12637527_12638013_12639522
41549	chr8	-	2236	8	FSM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	-2	29	-2	-3	multi-exon	FALSE	canonical	3	72	junction_3	11.6741472616082	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATAAATAAGTGAGTGT	4666	False	NA	NA	False	NA	NA	NA	70687118	70672850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
41550	chr17	+	2360	6	NIC	ENSMUSG00000034254.18	novel	2190	7	NA	NA	-41	4	intron_retention	FALSE	canonical	3	118	junction_1	5.38887743412299	29	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTCTCTGCGGCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	34824905	34832396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34825146_34829418_34829619_34829845_34830424_34830578_34830675_34830764_34830841_34831226
41551	chr10	+	2276	13	NNC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	0	4	intron_retention	FALSE	canonical	1	7	junction_9	125.429484394841	34	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACTTTAGTGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	75404467	75422029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75404601_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420631_75420842_75420991_75421334_75421424_75421539_75421714
41553	chr15	-	1881	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	374	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	2	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACCCTGCCAGCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	83056419	83037699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038593_83038754_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
41554	chrX	+	1652	11	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-1	36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	918.535486521887	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTGTTTTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	161543456	161561788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544695_161552825_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
41556	chr10	-	2070	10	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_7	73.8257875920078	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	367	False	NA	NA	False	NA	NA	NA	41685626	41594836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41685568
41557	chr11	+	3181	6	Antisense	novelGene_ENSMUSG00000020775.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGAGGTGGCCGGAGAG	NA	False	NA	NA	False	NA	NA	NA	116022646	116029639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_116022960_116023249_116023383_116023568_116025128_116025258_116026152_116029267_116029448_116029536
41558	chr5	+	930	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	287	-12	-11	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	4	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCATAGGTTCTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
41559	chr7	+	2585	17	Antisense	novelGene_ENSMUSG00000052997.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	124	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCAGCTTCCGCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	33840124	33868013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_33840889_33842153_33842299_33843913_33844018_33845626_33845722_33846939_33847100_33850214_33850326_33850419_33850530_33853928_33854069_33855308_33855409_33856667_33856801_33857409_33857497_33858265_33858364_33860960_33861063_33862578_33862644_33863809_33863879_33864824_33864911_33867797
41560	chr15	-	1432	3	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	14063	-877	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78	2	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGCCTGTACAATTTGA	2070	False	NA	NA	False	NA	NA	NA	79802654	79800890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79801779_79801884_79802252_79802477
41561	chr14	-	619	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	253	6	63	-6	multi-exon	FALSE	canonical	3	1530	junction_1	8	6213	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATTCGTTCCTTCATG	NA	False	NA	NA	False	NA	NA	NA	54491308	54472941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54473171_54480155_54480326_54491088
41562	chr14	-	2408	10	NNC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-73	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	203.869663035413	1	88	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATTTTGGTGATAAATT	NA	False	NA	NA	False	NA	NA	NA	40688837	40628405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40628932_40629067_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
41563	chr1	-	1764	13	FSM	ENSMUSG00000026019.16	ENSMUST00000027173.15	10012	13	-110	8358	107	-1275	multi-exon	FALSE	canonical	3	863	junction_12	56.5618515923547	2	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTGTTGGGTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	60137177	60117301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
41564	chr8	+	3132	1	Antisense	novelGene_ENSMUSG00000055553.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	373	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTTGGGAGGTAGAGGC	NA	False	NA	NA	False	NA	NA	NA	70971154	70974286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_70971200_70974300
41566	chr16	-	2109	9	NIC	ENSMUSG00000033918.17	novel	1348	10	NA	NA	5	-13	intron_retention	FALSE	canonical	3	1528	junction_5	111.151923060287	11	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTTTGTAAACAGTGTT	NA	False	NA	NA	False	NA	NA	NA	20121124	20098582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
41567	chr16	+	2363	21	NIC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	13	-22	combination_of_known_junctions	FALSE	canonical	2	11	junction_12	69.9972142302821	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATTAAATCCCCTCCTG	NA	False	NA	NA	False	NA	NA	NA	20367406	20379546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371072_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
41568	chr16	-	2819	3	FSM	ENSMUSG00000022978.12	ENSMUST00000147546.2	493	3	-206	-2120	59	-15	multi-exon	FALSE	canonical	3	279	junction_2	16	34	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTGAACGTTCATTTG	NA	False	NA	NA	False	NA	NA	NA	90524233	90516214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_90518647_90523180_90523248_90523913
41570	chr3	+	1130	4	NNC	ENSMUSG00000078578.10	novel	2515	7	NA	NA	150	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1267.23171607336	1	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	NA	False	NA	NA	NA	135164558	135171821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135164637_135165735_135165828_135168710_135168805_135170955
41572	chr9	+	1997	3	Antisense	novelGene_ENSMUSG00000038412.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGAGGCCGGGCCAGAGAC	2374	False	NA	NA	False	NA	NA	NA	121677625	121686692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_121679388_121681555_121681675_121686576
41573	chr2	-	1659	14	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	0	146	combination_of_known_junctions	FALSE	canonical	3	25	junction_13	161.5542849393	428	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGTGGTCCATTAGAA	NA	False	NA	NA	False	NA	NA	NA	48839253	48795181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800258_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839105
41574	chr8	+	3206	2	NNC	ENSMUSG00000071793.13	novel	948	5	NA	NA	-64	-7027	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	1	101	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGGATTTTAAGATGTT	NA	False	NA	NA	False	NA	NA	NA	20030650	20038861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20030856_20035860
41575	chr17	+	2024	4	NNC	ENSMUSG00000024038.18	novel	2021	3	NA	NA	-14	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1743.49081506678	4	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCTCACTATGTGGTT	NA	False	NA	NA	False	NA	NA	NA	31739074	31750295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_31739236_31740542_31740667_31746587_31748115_31750083
41576	chr5	+	3227	14	NNC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	-15	3	intron_retention	FALSE	non_canonical	0	0	junction_2	26.3560060186371	3	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGGTGGCACATGCCTT	8675	False	NA	NA	False	NA	NA	NA	142449783	142463560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142449891_142452012_142452148_142452285_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456312_142457957_142458140_142459662_142460270_142460629_142460742_142461457_142461556_142462448_142462867_142462970
41577	chr17	-	1193	4	FSM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	142	808	142	85	multi-exon	FALSE	canonical	3	1955	junction_2	187.919013289118	4874	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGGAGTATAAAACAAACG	3186	False	NA	NA	False	NA	NA	NA	71297743	71280935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71297467
41579	chr2	+	2143	11	Intergenic	novelGene_2775	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	72	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGGGTAGGAGGGAGCA	4516	False	NA	NA	False	NA	NA	NA	165669102	165740921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_165669643_165669856_165670608_165675218_165675345_165676809_165676890_165679202_165679256_165680730_165680820_165681917_165682013_165684684_165684798_165687940_165688136_165706679_165706695_165740835
41580	chr13	-	1594	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-3	-89	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	649.951905366805	1	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334806	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313641_97314536_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
41581	chrX	+	2095	4	NIC	ENSMUSG00000079317.11	novel	1613	5	NA	NA	9	-1	combination_of_known_junctions	FALSE	canonical	3	200	junction_3	21.9291789378647	7	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAATGTGGTCATTTGAT	NA	False	NA	NA	False	NA	NA	NA	165223780	165236133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_165223836_165229786_165229899_165232783_165233711_165235132
41583	chr14	-	814	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	-9	-4	-9	4	multi-exon	TRUE	canonical	3	91	junction_2	790	305	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTCCTCTGGCATAGCCTG	8669	False	NA	NA	False	NA	NA	NA	20443560	20441290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20441529_20441960_20442222_20443245
41585	chr7	-	2994	8	NNC	ENSMUSG00000011382.9	novel	5323	7	NA	NA	9	-1970	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.9095228575236	93	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCTTGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	45138220	45122380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45122822_45123171_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
41586	chr11	+	1165	6	NNC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	0	-196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2054.41382394103	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTACTTCATGTGGTAT	439	False	NA	NA	False	NA	NA	NA	52122863	52137489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52122946_52127663_52127710_52133413_52133488_52134441_52134586_52135807_52135949_52136811
41587	chrX	+	2823	4	FSM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	55	4	55	-4	multi-exon	FALSE	canonical	3	20	junction_1	2.86744175568088	133	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTGATTACTTTTA	NA	False	NA	NA	False	NA	NA	NA	108139025	108206073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_108139244_108193520_108193707_108197911_108197993_108203735
41588	chr3	+	1722	13	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	540.1245419654	1	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	32762861	32781122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772505_32772624_32772715_32772806_32774049_32774112_32774334_32774452_32774583_32774665_32776768_32776865_32779395_32779483_32780670
41589	chr16	-	1465	12	NIC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	-35	62	combination_of_known_splicesites	FALSE	canonical	1	28	junction_3	532.163399998084	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAAACGTCATTTGATTT	9067	False	NA	NA	False	NA	NA	NA	91525624	91486351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91486804_91487591_91487638_91489486_91489593_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
41590	chr17	+	1727	1	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-13	-429	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGAGCAGCATTGTAAAG	NA	False	NA	NA	False	NA	NA	NA	6869177	6870904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_6869200_6870900
41591	chr12	+	3510	19	Antisense	novelGene_ENSMUSG00000020964.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	140	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCAGGTTCCTTCTTCGCC	NA	False	NA	NA	False	NA	NA	NA	91775368	91815904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_91776828_91778650_91778771_91780600_91780777_91781390_91781467_91781746_91781916_91782541_91782689_91782994_91783085_91784055_91784121_91784993_91785065_91786812_91786887_91790309_91790363_91791591_91791749_91792070_91792147_91793275_91793341_91793427_91793485_91797462_91797611_91798338_91798449_91808433_91808662_91815735
41592	chr5	-	2007	5	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	246	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	32.9165611812656	81	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGGTATC	6377	False	NA	NA	False	NA	NA	NA	109838661	109822410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109823784_109824871_109825258_109826379_109826441_109826628_109826756_109838601
41593	chr14	+	3319	5	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	2	-81	combination_of_known_junctions	FALSE	canonical	3	107	junction_1	9.33742469849155	2	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGATTGATAAAACAAACAAT	NA	False	NA	NA	False	NA	NA	NA	21531503	21671388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285
41594	chr11	+	1222	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	190	0	-190	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	20	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATGTGGTATGTCATC	439	False	NA	NA	False	NA	NA	NA	52122863	52137495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
41596	chr11	+	2476	3	NNC	ENSMUSG00000018415.15	novel	1717	8	NA	NA	31278	3574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGTATCTGCTCTCCAC	NA	False	NA	NA	False	NA	NA	NA	60339365	60345327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60341108_60343160_60343197_60344629
41597	chr3	-	2417	11	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	-86	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	258.724563967166	2	78	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTCATGCTTCTGTAGAG	NA	False	NA	NA	False	NA	NA	NA	157737294	157716558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718515_157719588_157719679_157721958_157722046_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
41598	chr7	-	2092	15	NNC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	5	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	319.806231193521	1	99	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATACAGTTTTTATTCC	7995	False	NA	NA	False	NA	NA	NA	126641573	126626923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628671_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634767_126634838_126634919_126635113_126641515
41599	chr9	-	2169	19	NNC	ENSMUSG00000032582.15	novel	3999	21	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	141.485428731053	2	44	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAATAAATTTTGTTAAAG	7590	False	NA	NA	False	NA	NA	NA	107749943	107650766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107659971_107660029_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107738821_107738929_107749847
41600	chr7	+	2618	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	0	-14	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	44.7788215247215	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTAATAGCTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	67925742	68012821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67999981_68000165_68003356_68003492_68007932_68008037_68010989
41601	chr2	+	1960	1	Genic_Genomic	ENSMUSG00000059540.16	novel	NA	NA	NA	NA	284	1688	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCGTTCTTGGTTCCTA	9782	False	NA	NA	False	NA	NA	NA	181329592	181331552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_181329600_181331600
41602	chr2	+	4889	4	ISM	ENSMUSG00000041921.17	ENSMUST00000139045.8	2770	9	53558	6566	-3349	1476	internal_fragment	FALSE	canonical	3	59	junction_1	9.41629792788369	2	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGTTTCTAAAACTTGAAA	2620	False	NA	NA	False	NA	NA	NA	71337252	71348972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_71337287_71340084_71341905_71342469_71342513_71345980
41603	chrX	+	1629	12	NNC	ENSMUSG00000025037.7	novel	4167	15	NA	NA	38868	-2086	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	97.9725885091006	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTACTGTGACTTTTGTG	1886	False	NA	NA	False	NA	NA	NA	16524804	16551971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_16524912_16525683_16525776_16528555_16528707_16530905_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547111_16548439_16548538_16550202_16550315_16551218_16551284_16551470
41604	chr6	-	928	1	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGAAAATATTTGGAAGAA	7552	False	NA	NA	False	NA	NA	NA	122691512	122690584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122690600_122691500
41605	chr7	-	1635	11	NNC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	734.681162137699	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAAAACTGTCTTGATGTG	NA	False	NA	NA	False	NA	NA	NA	79765059	79744600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79744936_79745364_79745452_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
41606	chr9	+	2111	10	NNC	ENSMUSG00000010048.11	novel	2054	11	NA	NA	145	-4	intron_retention	FALSE	non_canonical	0	0	junction_7	224.080342734475	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGTGGCCTTTATCCTG	NA	False	NA	NA	False	NA	NA	NA	107465100	107470233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107465146_107467101_107467222_107467307_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107469038_107469273_107469403_107469474_107469571_107469673
41607	chr8	+	2109	17	NNC	ENSMUSG00000038416.16	novel	2301	18	NA	NA	37	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	175.952363936947	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTATCTTTTTCATTGTGT	NA	False	NA	NA	False	NA	NA	NA	13807713	13831882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821445_13825735_13825770_13827471_13827608_13829227_13829319_13831371
41608	chr13	-	1280	2	Genic_Genomic	ENSMUSG00000114547.2	novel	1342	1	NA	NA	3	155	multi-exon	FALSE	canonical	0	0	junction_1	0	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAAATACTATA	NA	False	NA	NA	False	NA	NA	NA	112731615	112730121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_112730220_112730433
41609	chr5	-	1965	19	NNC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	31	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	79.6744339929614	559	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCATAATTCTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	107745474	107696827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710640_107718012_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
41610	chr9	+	1738	7	NNC	ENSMUSG00000032044.5	novel	1821	7	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	58.042369581769	39	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTTTAATTTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	35179173	35187260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184835_35186401
41611	chr13	+	1583	11	Antisense	novelGene_ENSMUSG00000065434.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCGTTTACCTAGAAATT	NA	False	NA	NA	False	NA	NA	NA	58539769	58547793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_58540289_58541009_58541180_58541505_58541604_58541885_58541976_58542322_58542584_58543383_58543504_58544003_58544057_58544629_58544714_58545566_58545611_58546969_58547027_58547706
41612	chr7	+	1464	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	51	18	-4	0	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	1	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGCATGCTAATGGGAC	NA	False	NA	NA	False	NA	NA	NA	142606526	142621653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
41613	chr6	+	2962	6	FSM	ENSMUSG00000038527.10	ENSMUST00000049124.10	3010	6	12	36	12	-36	multi-exon	TRUE	canonical	2	10	junction_3	3.13687742827162	50	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAACAAATAAATTA	NA	False	NA	NA	False	NA	NA	NA	124470083	124487566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124470190_124470773_124471003_124482189_124482380_124483850_124483953_124484048_124484124_124485306
41614	chr8	-	1473	11	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	14	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.384972834162	73	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTGGTACTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83500760	83490248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_83490734_83490907_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
41615	chr15	-	2889	18	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-15	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.7776399489951	1	118	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCGAGCTCCATTCTCCT	6979	False	NA	NA	False	NA	NA	NA	98560790	98543006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543423_98543749_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549797_98549930_98550345_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
41616	chr4	-	3891	11	NNC	ENSMUSG00000028599.11	novel	3818	10	NA	NA	-2699	-21	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	25.4874478910698	2	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTATCTTTTAATCATT	7324	False	NA	NA	False	NA	NA	NA	144976139	144940053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144975363_144975473_144976007
41617	chr7	-	2543	5	FSM	ENSMUSG00000030443.17	ENSMUST00000062765.14	2550	5	7	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.61248608016091	106	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATTATTTTAATCAT	NA	False	NA	NA	False	NA	NA	NA	6334277	6318658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_6320779_6326645_6326742_6328451_6328579_6332253_6332316_6334139
41618	chr16	-	1369	10	FSM	ENSMUSG00000033918.17	ENSMUST00000136252.8	1362	10	-16	9	0	-9	multi-exon	FALSE	canonical	3	76	junction_6	534.615126360388	2347	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAAACAGTGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	20121111	20098578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112047_20112153_20116342_20116484_20116880_20117077_20120958
41619	chr7	-	1507	2	FSM	ENSMUSG00000060538.15	ENSMUST00000137875.8	509	2	-999	1	-999	-1	multi-exon	FALSE	canonical	3	60	junction_1	0	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTGTGTAAGGTACTTA	7002	False	NA	NA	False	NA	NA	NA	126489474	126485392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126485488_126488062
41620	chr17	-	2307	14	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	688.893581668392	3	96	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5760	False	NA	NA	False	NA	NA	NA	33904373	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33879148_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33888991_33889108_33896247_33896415_33904240
41622	chr2	-	1416	6	NIC	ENSMUSG00000027404.17	novel	1161	7	NA	NA	31	-21	intron_retention	FALSE	canonical	3	3295	junction_3	225.940346109322	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGTTATACATACAGTTG	NA	False	NA	NA	False	NA	NA	NA	130021292	130013575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130013864_130014522_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
41623	chr14	+	1465	7	NNC	ENSMUSG00000040618.8	novel	2631	8	NA	NA	28	-4	at_least_one_novel_splicesite	FALSE	non_canonical	2	21	junction_4	615.596571537634	35	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCACAGGACTCCCCA	8919	False	NA	NA	False	NA	NA	NA	55777750	55786325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781434_55785254_55785292_55785496_55785593_55785761
41624	chr2	-	3490	12	Antisense	novelGene_ENSMUSG00000027242.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	173	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTAGCCCTTTAAGCGA	5631	False	NA	NA	False	NA	NA	NA	121375336	121337236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_121337343_121341017_121341404_121348183_121348277_121349896_121349947_121355924_121356062_121357283_121357408_121359279_121359445_121361765_121361925_121364594_121364802_121365902_121366058_121372778_121374107_121374756
41625	chr4	+	2605	5	ISM	ENSMUSG00000028700.15	ENSMUST00000106494.3	2226	21	4848	-377	330	-30	3prime_fragment	FALSE	canonical	3	347	junction_4	45.7739008606433	7	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGTCATTGATTAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	116013475	116017011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
41627	chr6	-	2700	14	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	10686	1216	5941	0	3prime_fragment	FALSE	canonical	3	223	junction_9	28.2738091530602	1	55	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCCCTGCTTAAGCTT	3507	False	NA	NA	False	NA	NA	NA	39343923	39312922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822
41628	chr11	+	1690	10	NIC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	-20	-36	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	892.738953729573	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	107370382	107388963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
41629	chr3	-	2652	7	Antisense	novelGene_ENSMUSG00000118506.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	73	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89973178	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960900_89963511_89963632_89963835_89963887_89968941_89969424_89970513_89971861_89972813
41631	chr16	+	1775	7	FSM	ENSMUSG00000058550.16	ENSMUST00000096045.9	1479	7	0	-296	0	296	multi-exon	FALSE	canonical	3	369	junction_4	76.5188792971309	1576	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGGACTGAGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	48104097	48114896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
41632	chr9	+	1310	6	Antisense	novelGene_ENSMUSG00000074476.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGCGCCGAGTCCGAACC	6114	False	NA	NA	False	NA	NA	NA	21666729	21671578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_21667447_21667492_21667592_21668412_21668486_21668578_21668691_21668980_21669126_21671414
41633	chr4	+	3027	9	NIC	ENSMUSG00000029029.15	novel	1598	12	NA	NA	0	-10	intron_retention	FALSE	canonical	3	51	junction_4	6.17960354715414	10	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAATCCATTGAACAGTG	NA	False	NA	NA	False	NA	NA	NA	154226865	154241263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154237153_154237249_154237328_154238991_154239098_154239697_154240750_154240988
41634	chr3	+	1599	6	NNC	ENSMUSG00000027879.10	novel	2810	5	NA	NA	2	6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	167.192583567573	649	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGAAATTATATAGTATT	NA	False	NA	NA	False	NA	NA	NA	97808533	97829173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815_97821963_97827952_97828189_97828431
41635	chr6	-	1671	4	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	11	-79	intron_retention	FALSE	non_canonical	0	0	junction_1	4506.024189904	1	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTTTGTTTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	87828030	87820142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821129_87822091_87822303_87822446_87822776_87827885
41636	chr9	-	3025	6	FSM	ENSMUSG00000032262.14	ENSMUST00000034796.14	3001	6	-38	14	-13	-14	multi-exon	FALSE	canonical	3	34	junction_4	3.49857113690718	72	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGAAAAGTGACTCTGT	NA	False	NA	NA	False	NA	NA	NA	83688343	83660758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_83662863_83665188_83665317_83667087_83667260_83670321_83670403_83672029_83672218_83687991
41637	chr2	+	1101	1	Intergenic	novelGene_2595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACGTTGGAAGCGACCAG	NA	False	NA	NA	False	NA	NA	NA	29816890	29817991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_29816900_29818000
41638	chr2	+	1907	1	Intergenic	novelGene_2596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAGCAACTAACTTCCCC	NA	False	NA	NA	False	NA	NA	NA	29818406	29820313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_29818400_29820300
41639	chr7	-	2563	4	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-2563	1247	intron_retention	FALSE	canonical	3	712	junction_2	44.4322205412044	2	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACGAATGGTGCTCATGA	NA	False	NA	NA	False	NA	NA	NA	126634439	126630152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126630270_126631800_126631937_126632053_126632565_126632640
41640	chr8	+	2113	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	65	0	65	0	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	360	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTGGAGTCGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	107757918	107772387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
41643	chr10	-	2278	9	NNC	ENSMUSG00000020248.19	novel	2554	8	NA	NA	-21	-83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	297.540307143419	1040	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGAATCTTGTGTACAT	NA	False	NA	NA	False	NA	NA	NA	82599956	82584617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_82585412_82585582_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
41644	chr17	+	1916	14	NIC	ENSMUSG00000024069.15	novel	2148	14	NA	NA	2	-53	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	52.3530346463927	466	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGCCCTCCCAAATCAT	NA	False	NA	NA	False	NA	NA	NA	74702617	74730951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717280_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
41645	chr6	-	1360	5	NIC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_4	391.378652969219	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	NA	NA	NA	72339376	72336696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339258
41646	chr16	+	3057	16	FSM	ENSMUSG00000022701.19	ENSMUST00000178400.9	3745	16	71	617	-28	-617	multi-exon	FALSE	canonical	1	27	junction_10	16.0949957716331	109	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGCCTGGACTTACG	NA	False	NA	NA	False	NA	NA	NA	43710233	43784060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
41648	chr1	+	2174	18	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	-6	-930	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	154.693289579188	28	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTACTGAGGTGAGTGAT	NA	False	NA	NA	False	NA	NA	NA	45834656	45861743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858846_45861607
41650	chr7	-	4176	13	NIC	ENSMUSG00000025507.14	novel	2900	15	NA	NA	7	-16	intron_retention	FALSE	canonical	3	7	junction_9	17.1243410254397	1	132	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTATTTATTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	141023898	141018053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021230_141021387_141021443_141021524_141021735_141022063_141022478_141022880
41651	chr19	+	774	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	70	1510	9	112	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCAAACTGCTTTTGATC	NA	False	NA	NA	False	NA	NA	NA	5540552	5543719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
41652	chr19	+	2174	13	NNC	ENSMUSG00000024829.13	novel	1138	7	NA	NA	-17459	-2343	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	49	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCTGCTCCAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	3315441	3332982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3315664_3316333_3316457_3317238_3317336_3318296_3318416_3318658_3318845_3321527_3321698_3322884_3323035_3324354_3324555_3326753_3326920_3329532_3329633_3329807_3330000_3331421_3331587_3332698
41653	chr17	-	2570	14	ISM	ENSMUSG00000024008.17	ENSMUST00000024805.15	5708	21	35455	2358	-18609	2	3prime_fragment	FALSE	canonical	3	19	junction_13	23.8741770823823	11	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGACCCCCCCTCTCCTT	8861	False	NA	NA	False	NA	NA	NA	29421686	29376887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478
41654	chr10	-	2958	13	NNC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	10	-14	intron_retention	FALSE	non_canonical	0	0	junction_6	157.976439874924	2	110	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTGAAGGACCGAGCCT	NA	False	NA	NA	False	NA	NA	NA	81332216	81322304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324301_81324382_81324471_81325635_81325955_81326059_81326150_81327003_81327108_81327810_81327894_81328661_81328757_81328896_81329042_81329182_81329374_81331913
41655	chr15	-	3888	10	Intergenic	novelGene_3331	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	139	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCGTCGCCAGGAAACCAG	NA	False	NA	NA	False	NA	NA	NA	81339543	81284368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_81284484_81298627_81298748_81311474_81311883_81314888_81315092_81320912_81320976_81322265_81322380_81326577_81326664_81332517_81332696_81335099_81335220_81337062
41656	chr11	+	1931	6	FSM	ENSMUSG00000020733.4	ENSMUST00000021077.4	1925	6	-9	3	-9	-3	multi-exon	FALSE	canonical	3	130	junction_1	12.6964561984831	406	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGCCTCTGTGTCCTCC	NA	False	NA	NA	False	NA	NA	NA	115054157	115072004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115054778_115067176_115067339_115068049_115068204_115069875_115069917_115070832_115070923_115071140
41657	chr4	-	2360	10	NNC	ENSMUSG00000028790.14	novel	3738	9	NA	NA	2	-1055	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	213.812020819489	455	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCTTTTTTAATCAAAGT	4983	False	NA	NA	False	NA	NA	NA	129636087	129608666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129609980_129612875_129612935_129613831_129613900_129614444_129614647_129616437_129616572_129619368_129619516_129621347_129621465_129623993_129624119_129635571_129635677_129635997
41658	chr2	+	2996	3	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	-72	-7	intron_retention	FALSE	canonical	3	499	junction_1	30	18	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATAACACCTGCTTGCCT	41	False	NA	NA	False	NA	NA	NA	164404426	164410423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164405372_164405976_164407859_164410254
41659	chr10	+	2767	16	NNC	ENSMUSG00000052291.9	novel	2229	4	NA	NA	-23882	-1768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	122	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGCGACGTATCCACCG	6009	False	NA	NA	False	NA	NA	NA	116321074	116417386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_116322191_116328195_116328342_116329599_116329699_116330727_116330778_116330864_116330930_116333994_116334146_116334240_116334368_116335248_116335376_116337102_116337222_116339940_116340024_116342136_116342295_116342920_116343102_116353238_116353289_116363731_116363853_116384935_116385078_116417354
41662	chr11	+	1833	15	NIC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	-6	0	intron_retention	FALSE	canonical	3	887	junction_3	60.5904619691305	600	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120563875	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120600073_120600169
41663	chr7	-	1944	2	Antisense	novelGene_ENSMUSG00000100153.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	357	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATCGCCGTCCCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	119341450	119339354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_119339948_119340099
41664	chr17	-	2125	5	NIC	ENSMUSG00000039183.7	novel	1502	7	NA	NA	0	-2	intron_retention	FALSE	canonical	3	605	junction_2	61.0793541223219	9	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGATGTGGTCAAGGTGT	NA	False	NA	NA	False	NA	NA	NA	25105289	25101594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
41665	chr18	+	1779	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	6	-205	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1584.86061644352	6	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGGTTACTCTTGTATT	NA	False	NA	NA	False	NA	NA	NA	77861697	77870150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867675_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
41666	chr4	+	1578	10	NIC	ENSMUSG00000028601.19	novel	1319	10	NA	NA	53	0	intron_retention	FALSE	canonical	1	1	junction_4	314.240884248586	192	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTGCTGGAATTGTT	NA	False	NA	NA	False	NA	NA	NA	108022767	108036503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108029947_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
41667	chr17	-	3988	10	ISM	ENSMUSG00000063239.18	ENSMUST00000118161.3	4607	11	9872	5	-210	3	3prime_fragment	FALSE	canonical	2	11	junction_6	4.15739709641549	87	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCCTGCGTGTCCACTG	6572	False	NA	NA	False	NA	NA	NA	27722508	27644877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27645808_27650305_27650553_27653506_27654443_27657269_27657407_27657635_27657837_27669098_27669240_27670878_27671034_27673460_27673597_27691881_27692099_27721620
41668	chr2	-	3183	11	FSM	ENSMUSG00000082163.3_ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	29	-1132	-16	40	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	245	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAATAAATAATTATGCC	8163	False	NA	NA	False	NA	NA	NA	156848966	156836052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
41669	chr18	-	1607	7	ISM	ENSMUSG00000024644.18	ENSMUST00000236415.2	1956	10	5490	-2	-42	0	3prime_fragment	FALSE	canonical	3	559	junction_3	38.2404672216924	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCCGTGGTCTGACT	NA	False	NA	NA	False	NA	NA	NA	84693375	84685593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101
41670	chr5	+	2310	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	35	-94	0	94	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	657	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCAGTCACTTCATGAGT	NA	False	NA	NA	False	NA	NA	NA	8106561	8119245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
41671	chr11	-	1853	10	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1977.9451614563	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9684	False	NA	NA	False	NA	NA	NA	106679290	106672373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673073_106673294_106673511_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676299_106677799_106677901_106679098
41672	chr16	-	5290	2	FSM	ENSMUSG00000052316.10	ENSMUST00000064606.8	5310	2	8	12	8	-12	multi-exon	FALSE	canonical	3	13	junction_1	0	21	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATACAAAGGGCGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	30102066	30088131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_30093341_30101985
41673	chrX	-	2382	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	257	9	-33	2	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	197	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGGTATGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	8042163	8020719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
41675	chr6	-	3615	6	ISM	ENSMUSG00000030051.11	ENSMUST00000032130.8	1889	11	32	21357	-14	-15	5prime_fragment	FALSE	canonical	3	57	junction_1	10.2489023802552	39	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTATGATTTCCAACTT	NA	False	NA	NA	False	NA	NA	NA	87649143	87628087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
41676	chr2	+	2312	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	51.0299476342623	735	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGGTCGTTGCTTCCTTCC	5135	False	NA	NA	False	NA	NA	NA	164339462	164350218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349527_164349750
41677	chr10	-	3790	21	NNC	ENSMUSG00000032834.12	novel	3872	21	NA	NA	58	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	68.015145372189	1	198	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTTACTGGTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	78020925	78006750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78007969_78009214_78009290_78009412_78009558_78009666_78009886_78010764_78010831_78011319_78011412_78012079_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
41678	chr2	-	2573	13	NNC	ENSMUSG00000013465.20	novel	2637	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	176.879824237312	1	62	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGTGAGGAATCTGTT	NA	False	NA	NA	False	NA	NA	NA	25101393	25089727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25090479_25090670_25090828_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
41679	chr7	+	1888	14	ISM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	27	4429	16	-3538	5prime_fragment	FALSE	canonical	3	472	junction_5	48.9200531237767	34	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGCTGGCCTTTGCTG	4733	False	NA	NA	False	NA	NA	NA	46445553	46468795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545
41680	chr8	-	2560	8	NNC	ENSMUSG00000031586.18	novel	2547	9	NA	NA	15072	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	546.563400732622	176	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGATTTGTCTGACAACT	NA	False	NA	NA	False	NA	NA	NA	34404232	34272671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34403749
41681	chr2	-	2585	10	NIC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	-1	-13	intron_retention	FALSE	canonical	3	340	junction_1	34.188294870801	5	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCAGCTAGAGGAATGAGC	NA	False	NA	NA	False	NA	NA	NA	30068463	30063497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30064198_30064933_30065082_30065198_30065825_30065930_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
41682	chr15	-	1397	8	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	-5	-81	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_4	114.989263030271	3	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGATGTTGTATGTCCA	NA	False	NA	NA	False	NA	NA	NA	81228363	81203192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211453_81213250_81213368_81222136_81222289_81224174_81224242_81228301
41683	chr5	+	1673	5	Antisense	novelGene_ENSMUSG00000118744.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCGCCAGGGCGGGAC	NA	False	NA	NA	False	NA	NA	NA	23903289	23917662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_23904337_23904945_23905463_23915355_23915407_23916113_23916152_23917642
41685	chr5	+	876	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	18	5	18	-5	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACACACACTGTACCGT	4506	False	NA	NA	False	NA	NA	NA	122529958	122544237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
41686	chr8	-	1966	3	FSM	ENSMUSG00000079042.11	ENSMUST00000124790.8	945	3	-14	-1007	-14	1004	multi-exon	FALSE	canonical	3	429	junction_2	5	2393	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATGGCATTTTATATTA	NA	False	NA	NA	False	NA	NA	NA	65489838	65480064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_65481644_65488316_65488407_65489541
41687	chr14	-	2898	9	NIC	ENSMUSG00000022177.10	novel	1587	10	NA	NA	60	-4	intron_retention	FALSE	canonical	3	401	junction_4	35.5387112878337	3	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGAGTTTTAGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	54791758	54779245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
41688	chr12	+	1761	13	NIC	ENSMUSG00000059669.9	novel	1840	14	NA	NA	-7	-5	combination_of_known_splicesites	FALSE	canonical	1	10	junction_6	86.1930568871737	1	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATGACACCTGGAAACT	NA	False	NA	NA	False	NA	NA	NA	24548602	24608533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452_24559549_24564783_24564935_24566857_24567009_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
41692	chr9	+	2189	2	ISM	ENSMUSG00000010051.16	ENSMUST00000010195.14	3014	4	1945	-242	-694	242	3prime_fragment	FALSE	canonical	3	13	junction_1	0	2	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAACCCTGGCGCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	107456101	107458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_107456170_107456298
41694	chr18	-	1728	11	NNC	ENSMUSG00000024357.11	novel	1703	10	NA	NA	7	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	58.2731499062819	209	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35631940	35399448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35563293_35563361_35571319_35571434_35631843
41695	chr11	+	1544	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-49	multi-exon	FALSE	canonical	3	1960	junction_1	0	1	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAATAGCCTTTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
41696	chr19	+	1407	10	Antisense	novelGene_ENSMUSG00000025154.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	56	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCGCCTCAGGCACCGC	NA	False	NA	NA	False	NA	NA	NA	41762524	41790488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_41762613_41767542_41767650_41769592_41769788_41770768_41770836_41772763_41772850_41773208_41773441_41774999_41775207_41776744_41776826_41780185_41780452_41790410
41697	chr7	-	1357	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	-12	0	-12	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	3718	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1373	False	NA	NA	False	NA	NA	NA	80597540	80565124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
41698	chr4	+	2203	1	Genic_Genomic	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	NA	NA	NA	NA	2723	777	mono-exon	FALSE	NA	NA	NA	NA	NA	1	130	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145176032	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_145176000_145178200
41699	chr5	+	2167	14	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	28	-17	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	209.506549021362	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTTTCTAAAAAGTAGAT	NA	False	NA	NA	False	NA	NA	NA	64250320	64285490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64264981_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
41700	chr4	+	2918	5	NNC	ENSMUSG00000028278.15	novel	5008	7	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	58.311126725523	9	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGTTTTAAAAATAACCT	13	True	NA	NA	False	NA	NA	NA	32983036	33022163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005253_33020431
41701	chr3	+	1233	2	Genic_Genomic	ENSMUSG00000069014.5	novel	1488	1	NA	NA	95	17	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCAACATGCTTAGTCAT	5557	False	NA	NA	False	NA	NA	NA	54388975	54390363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_54389085_54389239
41702	chr8	-	962	7	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-36	-83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	484.416057399697	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCCTGGCCAAGCCAAG	NA	False	NA	NA	False	NA	NA	NA	85573495	85569307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569629_85571232_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
41703	chr6	-	1202	6	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	3918	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2248.90474676008	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGGAAACAACAAAACCTG	3009	False	NA	NA	False	NA	NA	NA	128410698	128407081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407140_128407242_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665
41704	chrX	-	3141	14	FSM	ENSMUSG00000067369.13	ENSMUST00000113252.8	3128	14	-16	3	-9	-3	multi-exon	FALSE	canonical	1	5	junction_12	15.8476474277441	121	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTATTCACTATCTCT	NA	False	NA	NA	False	NA	NA	NA	133177685	133123851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133171258_133171335_133177594
41705	chr1	-	3109	18	NNC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	-541	-172	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	21.8927868862568	3	58	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTCTTCCTGACCACCT	NA	False	NA	NA	False	NA	NA	NA	14375393	14240061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253705_14254561_14254736_14254849_14254909_14279118_14279209_14299716_14299797_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14375186
41707	chr6	+	1777	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-11	-92	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1772.09005330564	2	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5177	False	NA	NA	False	NA	NA	NA	85429062	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441931_85442890_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
41708	chr5	+	1836	8	NNC	ENSMUSG00000029464.11	novel	1592	8	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	168.532077731481	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	7988	False	NA	NA	False	NA	NA	NA	122510462	122520965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122510720_122511973_122512276_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
41709	chrX	+	2490	8	NNC	ENSMUSG00000031303.9	novel	4348	29	NA	NA	133807	8811	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	136	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGTACTTGAGCCCATC	3562	False	NA	NA	False	NA	NA	NA	158905235	158915158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158906943_158907514_158907626_158909191_158909257_158910528_158910725_158911458_158911552_158912401_158912505_158913111_158913234_158915065
41710	chr17	+	1355	6	ISM	ENSMUSG00000024069.15	ENSMUST00000179074.9	1938	14	16327	353	2122	-10	3prime_fragment	FALSE	canonical	3	170	junction_1	2.03960780543711	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAAAATGTTCTTGT	1143	False	NA	NA	False	NA	NA	NA	74718942	74730651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
41711	chr9	+	1764	10	ISM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	1	8249	1	1087	5prime_fragment	FALSE	canonical	3	353	junction_2	40.6338665537887	14	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACGACGAGGAGGAGGAA	927	False	NA	NA	False	NA	NA	NA	75348818	75365465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356
41712	chr17	-	1916	13	NNC	ENSMUSG00000023942.16	novel	2033	13	NA	NA	240	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	883.696918097803	1	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45904320	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899315_45899927_45900001_45900133_45900238_45900396_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257
41713	chr5	-	1490	5	NIC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	21	junction_4	356.535411985962	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGCTTGCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	130284373	130274572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282851_130284050
41716	chr2	+	533	1	Genic_Genomic	ENSMUSG00000001999.16	novel	NA	NA	NA	NA	7494	433	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCATTGGTGTTTGCCT	663	False	NA	NA	False	NA	NA	NA	126929690	126930223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_126929700_126930200
41717	chr2	+	3734	23	NNC	ENSMUSG00000027006.14	novel	4042	23	NA	NA	291	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	84.3617383211251	1	117	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTCTTTTGAAGATGAT	NA	False	NA	NA	False	NA	NA	NA	80146100	80184387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155357_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175265_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
41718	chr11	+	3524	7	NNC	ENSMUSG00000036819.15	novel	4351	6	NA	NA	-21	1277	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	21.5921796542689	98	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAACAGTGTGGAAATGT	9536	False	NA	NA	False	NA	NA	NA	59340925	59350670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_59341339_59341500_59341667_59344336_59344506_59344617_59344886_59345758_59345906_59346132_59347021_59349197
41719	chr9	+	1719	5	NNC	ENSMUSG00000010047.13	novel	2062	5	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	94.7532980956336	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGCTTCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	107446321	107449970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256_107449669_107449831
41720	chr8	+	1875	5	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	20	-3389	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28.6792607994	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGTCTCAGAGCCCCCGG	NA	False	NA	NA	False	NA	NA	NA	73197743	73209106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73198120_73198330_73199315_73203293_73203586_73205202_73205277_73208957
41721	chr9	-	1364	7	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	25	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1696.49855093759	106	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGGAACTCTGAACAAAAT	NA	False	NA	NA	False	NA	NA	NA	110775201	110768689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769165_110769688_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
41722	chr6	-	4841	1	NIC	ENSMUSG00000033769.17	novel	5439	22	NA	NA	270652	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	101	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAAGCCACTGTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	84600318	84595477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_84595500_84600300
41723	chrX	-	2298	6	FSM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	-12	-295	-12	0	multi-exon	FALSE	canonical	3	142	junction_5	73.271003814606	164	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCCGGCTCTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	100838041	100833658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_100834130_100834212_100834255_100834844_100834891_100835166_100835250_100835786_100835944_100836542
41724	chr4	-	1474	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	16	-1	16	1	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	1315	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGGCTCCTTTGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	116851594	116847160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
41726	chr7	+	2291	6	NIC	ENSMUSG00000019737.15	novel	1006	7	NA	NA	11	0	intron_retention	FALSE	canonical	3	156	junction_2	32.932658562588	73	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGTCTGAGAATATCAG	NA	False	NA	NA	False	NA	NA	NA	30014251	30018467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30017468_30018097_30018157_30018248
41727	chr2	-	3183	7	ISM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	56	77	56	-2	intron_retention	FALSE	canonical	0	0	junction_6	148.454257825994	9	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGCTTGTTGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	130506523	130495956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996
41728	chr19	-	2959	11	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35135	-2	intron_retention	FALSE	canonical	3	31	junction_8	12.458330546265	99	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGTCTTTGCATTTCCTT	694	False	NA	NA	False	NA	NA	NA	44145746	44136078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490
41729	chr11	-	1022	4	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAAGGCGAATGTAATAG	NA	False	NA	NA	False	NA	NA	NA	72342355	72340542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72340658_72340816_72340919_72341449_72341600_72341700
41731	chr7	-	1966	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	0	3103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	126.089254102005	947	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAACGAAAGATACATC	NA	False	NA	NA	False	NA	NA	NA	81439213	81428826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
41734	chr6	-	3184	4	ISM	ENSMUSG00000030316.14	ENSMUST00000154621.3	724	6	7	13373	7	1702	5prime_fragment	FALSE	canonical	3	21	junction_2	197.90626288445	31	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTTGATGATGATATG	NA	False	NA	NA	False	NA	NA	NA	115014779	115006536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_115009274_115011116_115011212_115011911_115012095_115014610
41735	chr17	-	2408	10	FSM	ENSMUSG00000012296.17	ENSMUST00000225080.2	2412	10	0	4	0	-4	multi-exon	FALSE	canonical	3	131	junction_7	91.006850915633	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAAGGCTTAATTTCTT	5833	False	NA	NA	False	NA	NA	NA	46593925	46568806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593271_46593366_46593885
41736	chr2	+	2764	9	FSM	ENSMUSG00000041921.17	ENSMUST00000139045.8	2770	9	-13	19	5	-16	multi-exon	FALSE	canonical	3	42	junction_5	11.7147076361299	23	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAACTCTCAAAC	NA	False	NA	NA	False	NA	NA	NA	71283681	71355519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71283743_71337128_71337287_71340084_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
41741	chr8	+	2125	17	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	1	-66	at_least_one_novel_splicesite	FALSE	canonical	2	74	junction_1	296.727140810796	1	85	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	107620268	107649653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620345_107621276_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
41743	chr14	+	2398	17	NNC	ENSMUSG00000021975.10	novel	2674	17	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	61.699593546068	153	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCAGTTCTATTGCACT	NA	False	NA	NA	False	NA	NA	NA	65187757	65277281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274806_65274933_65276721
41744	chr11	+	1911	14	NIC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	-7093	-7	intron_retention	FALSE	canonical	0	0	junction_6	29.817392962446	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGACATTGAGTGCATT	NA	False	NA	NA	False	NA	NA	NA	83372759	83397562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
41745	chr7	+	1785	3	NNC	ENSMUSG00000038503.16	novel	4492	3	NA	NA	-50	1029	at_least_one_novel_splicesite	FALSE	canonical	1	17	junction_1	647.5	1	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTACTTTGTCCCAGTGAA	NA	False	NA	NA	False	NA	NA	NA	83541487	83548317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544741_83544971_83546957
41746	chr4	+	1362	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	56	1958	-23	743	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	1	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAGCTCACTACTTGGC	-1	True	NA	NA	False	NA	NA	NA	40722535	40733006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
41747	chr7	-	2065	17	NNC	ENSMUSG00000030720.17	novel	2487	17	NA	NA	-82	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_16	45.8405865472945	76	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGCTTATTTTAACAG	NA	False	NA	NA	False	NA	NA	NA	126183561	126171279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182797_126183345
41748	chr1	+	1813	1	Antisense	novelGene_ENSMUSG00000026034.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGCTCTTAACCGCTA	4234	False	NA	NA	False	NA	NA	NA	58453763	58455576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_58453800_58455600
41750	chrX	-	2258	10	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	121	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTACCCTAAAGGAAAATGT	NA	False	NA	NA	False	NA	NA	NA	100492188	100480820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100480982_100483090_100483287_100485120_100485420_100486531_100486631_100486904_100487085_100487879_100487966_100488291_100488389_100488901_100488938_100489719_100489834_100491198
41751	chr12	-	2693	4	ISM	ENSMUSG00000050671.13	ENSMUST00000051601.6	1350	5	1203	-1038	1139	-6	3prime_fragment	FALSE	canonical	3	77	junction_1	6.16441400296898	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACAGTTTGATAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	87332708	87325417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799
41752	chr6	+	2310	18	Fusion	ENSMUSG00000025609.16_ENSMUSG00000086855.2	novel	888	6	NA	NA	1807	-3	multi-exon	FALSE	non_canonical	0	0	junction_3	246.125491945607	1	47	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGTATATTTTTC	NA	False	NA	NA	False	NA	NA	NA	31351636	31484900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_+_31351696_31395865_31395936_31403648_31403792_31405066_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428510_31435962_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
41753	chr16	+	3718	7	NNC	ENSMUSG00000014074.18	novel	4460	6	NA	NA	41	-30	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	8.47873156131794	144	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTCTTAAAAAAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	32096319	32120222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936_32108059_32110720_32110800_32117205_32118510_32119180
41755	chr4	-	3138	2	Antisense	novelGene_ENSMUSG00000038729.25_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTCAGCCGGGACAAAT	NA	False	NA	NA	False	NA	NA	NA	57857642	57845249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_57845305_57854559
41756	chr19	+	3298	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	154	8	3	-8	multi-exon	FALSE	canonical	3	652	junction_7	60.0436480355873	1	200	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCAAAAGAATGTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	10160405	10174230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
41759	chr11	+	4290	30	NNC	ENSMUSG00000017774.20	novel	4652	32	NA	NA	101	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	93.8581037445652	1	190	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATATGTATTTGCCAACA	7938	False	NA	NA	False	NA	NA	NA	75541430	75564718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75541591_75548317_75548474_75548578_75548695_75549177_75549377_75549464_75549546_75550996_75551177_75551258_75551358_75551724_75551839_75551922_75551995_75552320_75552441_75552559_75552643_75552847_75552954_75553060_75553142_75553397_75553490_75556343_75556439_75556518_75556566_75556662_75556744_75559006_75559113_75559235_75559354_75559833_75559948_75560023_75560101_75560606_75560676_75560772_75560858_75560956_75561115_75561368_75561419_75562469_75562549_75562630_75562702_75562783_75562882_75562977_75563078_75563435
41760	chr9	+	1348	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8916.54151002506	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082272_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085106_64085275_64085504
41764	chr6	+	2394	5	ISM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	8602	23	8046	-23	3prime_fragment	FALSE	canonical	3	336	junction_4	28.0835806121655	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAACCCTGCTTCTCAA	NA	False	NA	NA	False	NA	NA	NA	71529382	71558540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
41765	chr6	-	2517	8	NIC	ENSMUSG00000029735.18	novel	2671	9	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	14.7496108561604	66	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGCAATGCTGTGGTATT	NA	False	NA	NA	False	NA	NA	NA	43643131	43321934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43536876_43536947_43588247_43588320_43642693_43642752_43643069
41766	chr18	+	4142	4	NNC	ENSMUSG00000104225.2	novel	482	2	NA	NA	49	4071	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAGTAGCATTTGGTCA	381	False	NA	NA	False	NA	NA	NA	37752007	37756890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_37752216_37752328_37752983_37753026_37753245_37753828
41767	chr10	-	4495	17	NIC	ENSMUSG00000035798.15	novel	3635	17	NA	NA	-9	1	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	8.47030659126339	41	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGTCTGCTCAGTTCA	NA	False	NA	NA	False	NA	NA	NA	110845873	110777639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_110780393_110781329_110781425_110782027_110782186_110783159_110783244_110784051_110784146_110785481_110785545_110786421_110786545_110790924_110791028_110792146_110792290_110796872_110796999_110803544_110803708_110804289_110804355_110809608_110809754_110810204_110810283_110817856_110817980_110821800_110821905_110845798
41768	chr4	-	2319	14	NNC	ENSMUSG00000028677.20	novel	1675	14	NA	NA	2281	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	473.471567724808	272	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACAAGCTGCTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	117230373	117128667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135187_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117230057
41769	chr8	-	1663	19	NIC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	176.182083490944	5	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3363	False	NA	NA	False	NA	NA	NA	105261239	105237659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105237900_105239831_105239882_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
41770	chr11	+	2367	27	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	31	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.781926418815	1	81	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCATGTGCCTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	29080778	29111591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29082849_29082912_29083855_29083927_29084599_29084706_29085510_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
41772	chr3	-	1486	15	Antisense	novelGene_ENSMUSG00000001016.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	29	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCACACAACCGCTCTTC	NA	False	NA	NA	False	NA	NA	NA	90395268	90383523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_90383551_90384309_90384371_90384625_90384669_90387909_90388013_90388296_90388376_90388668_90388774_90390083_90390148_90391758_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394291_90394402_90394530_90394623_90394761_90394886_90394938
41773	chr17	+	2060	18	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	26	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	287.418964057096	2	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTTCTTTCCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	6320770	6356041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354519_6354611_6354851_6354919_6355305_6355534_6355643
41774	chr4	-	1669	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	81	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	769.39914218824	2	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAACTTCTTTTTGTGT	80	False	NA	NA	False	NA	NA	NA	41098102	41092728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41094000_41094265_41094385_41094708_41094839_41095144_41095272_41098001
41775	chr11	-	1959	13	NNC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	5	55	intron_retention	FALSE	canonical	2	9	junction_2	309.074514568179	2	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCACATGTTTTCTTAAT	NA	False	NA	NA	False	NA	NA	NA	96807213	96798586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96798949_96799055_96799194_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976
41776	chr5	+	1378	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-50	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1410.14502800244	2	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAATATATTCTCGCTGT	706	False	NA	NA	False	NA	NA	NA	77099573	77115346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112466_77114093_77114250_77115165
41777	chr11	-	3100	9	FSM	ENSMUSG00000017802.15	ENSMUST00000017946.6	3165	9	61	4	11	-4	multi-exon	FALSE	canonical	3	80	junction_5	11.6162601554889	209	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTGCTGTTTCGTTGTG	9856	False	NA	NA	False	NA	NA	NA	101010658	100987342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
41778	chr5	-	597	5	Antisense	novelGene_ENSMUSG00000029614.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	132	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCTTGTCCCCACCAACT	NA	False	NA	NA	False	NA	NA	NA	121347028	121343886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121343918_121344728_121344872_121345207_121345256_121346447_121346637_121346842
41780	chr10	+	3242	6	NNC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-71	-236	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	53.5925367938485	138	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAGCATTTTGAATTAAC	NA	False	NA	NA	False	NA	NA	NA	103203572	103232783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_103204015_103223939_103224077_103224757_103225203_103229251_103229410_103229761_103229889_103230850
41781	chr14	+	1892	14	FSM	ENSMUSG00000004561.15	ENSMUST00000047899.13	1623	14	-274	5	-274	3	multi-exon	FALSE	canonical	0	0	junction_8	48.1261901412816	446	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATAGAGGTGGATGTTCTG	NA	False	NA	NA	False	NA	NA	NA	52122024	52129320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
41782	chr2	-	5567	27	NNC	ENSMUSG00000068394.5	novel	5768	28	NA	NA	19	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	14.5766693706357	1	156	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCGAAGATTTGTCATGA	NA	False	NA	NA	False	NA	NA	NA	125467014	125405015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_125406315_125408128_125408242_125408452_125408610_125410743_125410848_125411474_125411572_125418633_125418776_125421293_125421945_125423615_125423748_125425711_125425985_125428250_125428395_125429520_125429648_125429812_125429942_125431375_125431486_125432029_125432153_125436792_125436982_125443061_125443233_125444761_125444854_125447255_125447404_125452927_125453129_125454856_125454997_125456207_125456349_125460292_125460462_125461585_125461811_125461916_125461990_125462206_125462311_125463092_125463187_125466795
41785	chr7	-	1486	3	FSM	ENSMUSG00000002985.17	ENSMUST00000174710.2	514	3	-2	-970	0	2	multi-exon	FALSE	canonical	3	8700	junction_2	860.5	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTCTCTGTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	19432977	19430194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19431573_19432112_19432179_19432935
41787	chr2	-	2378	12	NNC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	29	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	87.2010122012676	1	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGCAGTTGTGATGAAA	NA	False	NA	NA	False	NA	NA	NA	5900214	5875832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887634_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
41788	chr1	+	2521	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	26	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	595.509678995881	1	123	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATACATGTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	4928062	4968125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962134_4962293_4963639_4963787_4965156_4965229_4966578
41789	chr7	+	4220	30	NNC	ENSMUSG00000032812.19	novel	4926	33	NA	NA	-520	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.8191605390187	1	167	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTGTATATTTTACCCT	NA	False	NA	NA	False	NA	NA	NA	101034083	101061080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101034181_101035355_101035481_101035598_101035749_101035996_101036067_101036312_101036434_101037193_101037397_101037820_101037928_101039270_101039471_101041042_101041129_101042653_101042837_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057255_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
41791	chr14	-	1527	9	NNC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1466.39165982353	2	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGAATTTGAAGGAAAGA	8768	False	NA	NA	False	NA	NA	NA	52341442	52311913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312191_52312340_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
41792	chr3	+	2126	7	ISM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	232	2	232	-2	3prime_fragment	FALSE	canonical	3	341	junction_1	53.0830062784273	51	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATACGTCCTTTTGCTCAC	NA	False	NA	NA	False	NA	NA	NA	68401772	68533794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
41793	chr19	+	1396	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	155	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2978.23859618441	12	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	998	False	NA	NA	False	NA	NA	NA	8944559	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947336_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
41794	chr10	+	2013	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	0	16	0	-16	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	1	65	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGCTGTCATTGTATTT	NA	False	NA	NA	False	NA	NA	NA	93289272	93320720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
41795	chr7	-	2867	16	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	-59	intron_retention	FALSE	canonical	3	82	junction_4	33.9106014232849	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTCCCTTCACTCTCCC	NA	False	NA	NA	False	NA	NA	NA	140697703	140682613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140683148_140683904_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
41797	chr1	+	455	1	NIC	ENSMUSG00000025962.16	novel	4486	12	NA	NA	106	427	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTACTTCATGACCTT	NA	False	NA	NA	False	NA	NA	NA	63776978	63777433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_63777000_63777400
41798	chr7	+	1155	2	ISM	ENSMUSG00000048078.17	ENSMUST00000107165.8	10930	33	683567	5585	98597	-5585	internal_fragment	FALSE	canonical	3	20	junction_1	0	1	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGGACAACAGCAAGGT	NA	False	NA	NA	False	NA	NA	NA	96544444	96552176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_96545475_96552051
41800	chr7	-	1704	9	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	28	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	705.305563213562	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8931	False	NA	NA	False	NA	NA	NA	141941528	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937198_141939285_141939356_141941473
41801	chr8	+	1959	11	NNC	ENSMUSG00000003033.16	novel	2084	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	178.669079585697	69	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTGCCTGTCTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	72993939	73011224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006826_73007292_73007478_73009540_73009667_73009950_73010027_73010578
41802	chr7	-	394	1	Genic_Genomic	ENSMUSG00000048170.15	novel	NA	NA	NA	NA	2531	146	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTCTCATACGCTGATG	NA	False	NA	NA	False	NA	NA	NA	128298412	128298018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_128298000_128298400
41803	chr14	+	1471	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	64	19	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	844.203256857547	23	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAACATGATTGTGTG	1750	False	NA	NA	False	NA	NA	NA	26359292	26377988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374301_26375025_26375118_26377050_26377161_26377299
41804	chr16	-	1409	10	NIC	ENSMUSG00000022751.10	novel	1286	10	NA	NA	-23	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	228.91909185842	2985	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTTTGATGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	56987727	56977029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_56977530_56977846_56977996_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
41805	chr13	+	1786	11	NNC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	142.996363590128	74	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	99481295	99552070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541583_99546348_99546420_99547785_99547929_99548702_99548874_99551246
41806	chr17	-	1592	3	FSM	ENSMUSG00000047407.18	ENSMUST00000186358.6	1455	3	-141	4	-3	-4	multi-exon	FALSE	canonical	3	94	junction_1	139.5	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTGCAATGAAGAGCAT	NA	False	NA	NA	False	NA	NA	NA	71158205	71151209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71152236_71153166_71153394_71157866
41810	chr15	-	3944	22	FSM	ENSMUSG00000033762.9	ENSMUST00000036852.9	3896	22	-49	1	-34	-1	multi-exon	FALSE	canonical	3	37	junction_12	16.3579572820053	82	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCTTTCTGGTAACATA	NA	False	NA	NA	False	NA	NA	NA	76594782	76587753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76588066_76588153_76588263_76588442_76588597_76588675_76588857_76588933_76589104_76589186_76589317_76589390_76589644_76589793_76590057_76590145_76590288_76590358_76590539_76590616_76590806_76590882_76590967_76591236_76591374_76591451_76591545_76592324_76592424_76592526_76592635_76592734_76592862_76593001_76593752_76593967_76594109_76594300_76594399_76594477_76594512_76594592
41811	chr3	+	1674	5	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	-8975	-288	intron_retention	TRUE	non_canonical	0	0	junction_4	282.181679065102	1	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTACTTATTATTTAGAC	8004	False	NA	-30	True	NA	NA	NA	30864024	30873893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872644
41812	chr6	+	3669	8	NIC	ENSMUSG00000037997.13	novel	3746	9	NA	NA	-8	-18	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	15.8513502933488	51	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTCTGTATCAGGTCT	NA	False	NA	NA	False	NA	NA	NA	127430602	127471185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_127430786_127444994_127445116_127447664_127447794_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
41813	chr4	-	1683	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	980.426927414787	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACAGGAACTTCTTTTTGT	2	True	NA	NA	False	NA	NA	NA	41098180	41092730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093814_41094000_41094265_41094354_41094708_41094841_41095144_41095272_41098001
41814	chr9	-	2122	15	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	0	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	222.231447654311	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGCTATTTGACTTAGAA	NA	False	NA	NA	False	NA	NA	NA	108526517	108481872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485967_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
41815	chr9	+	1571	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1709.79146511107	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGAACTGTGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	108765774	108778682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777611_108777702_108778006_108778083_108778502
41816	chr10	-	3495	6	NIC	ENSMUSG00000059554.13	novel	1190	6	NA	NA	-199	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	20.4782811778723	45	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCATCTCTGTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	18110945	18089429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_18089927_18092007_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
41817	chr2	-	1993	10	Antisense	novelGene_ENSMUSG00000039678.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGACACAGCAGGCAAAG	8198	False	NA	NA	False	NA	NA	NA	30040661	30026683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30026724_30027130_30027193_30027291_30027392_30030484_30030568_30032271_30032431_30036661_30036873_30037371_30037535_30038631_30038796_30038942_30039010_30039717
41819	chr3	-	1843	8	NNC	ENSMUSG00000097032.3	novel	511	3	NA	NA	-27850	-2149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	67	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGGCCCCCCGTTTCCTC	NA	False	NA	NA	False	NA	NA	NA	135172276	135144135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_135144189_135145407_135145560_135160950_135161011_135161106_135161139_135164556_135164632_135165729_135165836_135168760_135168803_135170953
41820	chr3	-	2010	15	FSM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	624	3	-12	-3	multi-exon	TRUE	canonical	3	42	junction_11	13.9571136130707	201	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGGCTTCAGTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	95965154	95907146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291_95964427_95964993
41821	chrX	-	4641	11	Antisense	novelGene_ENSMUSG00000004221.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	65	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCAAGGAAAAAGCCTAGA	-9	True	NA	NA	False	NA	NA	NA	73494656	73472900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73473428_73475103_73475273_73476410_73476611_73477406_73477619_73480767_73480887_73482510_73482664_73483478_73483555_73486948_73487091_73487373_73487519_73491462_73491524_73491819
41822	chr7	-	2502	4	NNC	ENSMUSG00000061374.15	novel	2637	3	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.586220720504	172	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	4249	False	NA	NA	False	NA	NA	NA	5016260	5010057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_5010959_5011001_5012205_5015676_5016022_5016207
41824	chr10	+	2699	19	NNC	ENSMUSG00000019977.17	novel	2793	18	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	370.457058373525	1	110	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTGCAAAAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171907	21244784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212874_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227863_21227896_21227944_21228440_21228510_21230537_21230631_21234216_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
41826	chr17	-	2716	10	Antisense	novelGene_ENSMUSG00000024462.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTTACTTTAAAAGGAAT	NA	False	NA	NA	False	NA	NA	NA	37385180	37373940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_37374285_37375550_37375629_37378666_37378799_37380001_37380119_37380200_37380317_37380874_37380963_37381541_37381673_37382743_37382872_37383033_37383178_37383742
41827	chr8	+	2460	5	NNC	ENSMUSG00000052446.18	novel	781	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	174.168560595763	3	93	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGTTTGTAGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	72704909	72724176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742_72723603_72723859
41828	chr18	+	1823	17	NNC	ENSMUSG00000024474.8	novel	1996	20	NA	NA	4	-572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	260.58383218026	1	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGCCTCTGCCTCCTG	NA	False	NA	NA	False	NA	NA	NA	36877751	36890115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884325_36885415_36885519_36886314_36886355_36886479_36886733_36887605_36887685_36888477_36888559_36888749_36888808_36889600_36889690_36889874
41830	chr1	+	1850	9	NIC	ENSMUSG00000026641.14	novel	1115	10	NA	NA	-15	2	intron_retention	FALSE	canonical	3	42	junction_4	52.4183889489175	44	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTCCTCCTTT	6783	False	NA	NA	False	NA	NA	NA	171238926	171246327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171245100_171245208_171245433_171245599
41831	chr7	+	300	1	FSM	ENSMUSG00000091955.3	ENSMUST00000170837.3	485	1	-8	193	-8	-193	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCGAGCCACAAGCTGCAC	NA	False	NA	NA	False	NA	NA	NA	24561629	24561929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24561600_24561900
41832	chr9	-	1337	8	NIC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	-2	-8	combination_of_known_splicesites	FALSE	canonical	3	40	junction_4	581.714671624907	49	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTTCGGTTATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	37568535	37560485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37564328_37564466_37565511_37565733_37566317_37566389_37568293
41833	chr2	-	3772	1	NIC	ENSMUSG00000027447.7	novel	860	3	NA	NA	-45	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCTGTTTGAGTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	148717416	148713644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_148713600_148717400
41835	chr1	+	1456	4	NIC	ENSMUSG00000025967.17	novel	681	5	NA	NA	-5	0	intron_retention	FALSE	canonical	3	2982	junction_1	241.446106247796	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_63216451_63216912_63217725_63217990_63218058_63218406
41836	chr10	-	3190	5	FSM	ENSMUSG00000040521.12	ENSMUST00000120547.2	1271	5	-27	-1892	14	-11	multi-exon	FALSE	canonical	3	855	junction_4	84.2388716686068	15	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATAGTGCTTAATGTG	NA	False	NA	NA	False	NA	NA	NA	126866695	126858211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
41837	chr16	-	3086	4	FSM	ENSMUSG00000046962.17	ENSMUST00000052089.9	3072	4	-12	-2	0	2	multi-exon	FALSE	canonical	3	41	junction_1	18.4451137763426	103	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTGGGATGAATTAATAC	NA	False	NA	NA	False	NA	NA	NA	97763821	97750958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_97752070_97752669_97754294_97757957_97758101_97763613
41838	chr10	+	1526	9	Genic_Genomic	ENSMUSG00000085111.4	novel	483	3	NA	NA	9929	11580	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCTCTCAGGGCGCAGG	NA	False	NA	NA	False	NA	NA	NA	85774566	85793650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_85774983_85777761_85777882_85778350_85778463_85779072_85779261_85779677_85779855_85782054_85782217_85783045_85783153_85791587_85791647_85793465
41839	chr19	-	1753	6	NIC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-36	-2	intron_retention	FALSE	canonical	3	1089	junction_1	76.6018276544366	2474	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCTGCCTCTGCTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	7183635	7175576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7176605_7176736_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
41840	chr7	-	1520	7	NIC	ENSMUSG00000030697.8	novel	1400	8	NA	NA	-44	-4	intron_retention	FALSE	canonical	3	2469	junction_6	137.311891530033	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGACTTAGGTTCTGTCA	5182	False	NA	NA	False	NA	NA	NA	126391556	126385043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
41843	chr4	+	3131	1	FSM	ENSMUSG00000081593.2	ENSMUST00000117060.2	1963	1	-828	-340	-828	340	mono-exon	FALSE	NA	NA	NA	NA	NA	19	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAACTGAACAACTCTA	61	False	NA	-34	True	NA	NA	NA	12124461	12127592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_12124500_12127600
41844	chr3	+	4879	27	FSM	ENSMUSG00000027695.17	ENSMUST00000120834.8	4849	27	-35	5	-35	0	multi-exon	TRUE	canonical	1	4	junction_2	5.02258214078643	31	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAGGATGGTGAAATCAT	8171	False	NA	NA	False	NA	NA	NA	27992808	28187383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_27992900_28006661_28006812_28078311_28078503_28079361_28079490_28082744_28082891_28083315_28083422_28085385_28085452_28093924_28093984_28095333_28095427_28099092_28099246_28102161_28102312_28103357_28103442_28110611_28110694_28125314_28125426_28130539_28130741_28132352_28132567_28139934_28140064_28141320_28141440_28142794_28142909_28149919_28150031_28153808_28153898_28163883_28163998_28166391_28166442_28174842_28174978_28178721_28178876_28184461_28184580_28185662
41846	chr6	+	3193	10	NIC	ENSMUSG00000030347.7	novel	4107	11	NA	NA	0	-2440	intron_retention	FALSE	canonical	3	74	junction_9	15.8542746504329	4	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTGCTCAGAAAATTATA	NA	False	NA	NA	False	NA	NA	NA	126916937	126944190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_126916990_126919274_126919470_126921754_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842
41847	chr7	-	1772	10	NIC	ENSMUSG00000003438.18	novel	1515	11	NA	NA	-9	-15	intron_retention	FALSE	canonical	3	2125	junction_8	157.858586504926	1877	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCTGTCAGCCTAGCTGC	2682	False	NA	NA	False	NA	NA	NA	28011471	28004955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
41848	chr1	-	2171	15	NNC	ENSMUSG00000025982.14	novel	6195	25	NA	NA	-10	2884	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	375.169050331355	1	37	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTATCCGCCAACACAGAG	NA	False	NA	NA	False	NA	NA	NA	55066542	55039425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042355_55042485_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
41849	chr8	+	2102	18	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	0	0	intron_retention	FALSE	canonical	3	310	junction_14	29.1854824791925	431	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4585	False	NA	NA	False	NA	NA	NA	3681152	3692795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
41851	chr11	-	1014	11	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	7708.7680624079	9	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113076	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102600_33102736_33102853_33103985_33104061_33106002_33106075_33107005_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
41852	chr8	-	2573	7	NNC	ENSMUSG00000014837.16	novel	3492	7	NA	NA	12	-7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	14.1037819986934	29	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATGATGTGTGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	106016124	106007048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106011963_106016035
41853	chr4	+	3237	11	ISM	ENSMUSG00000028948.17	ENSMUST00000084116.13	3722	12	1738	-14	1702	-4	3prime_fragment	FALSE	canonical	3	617	junction_4	41.8173409006359	241	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGATTGTGAATACAGCT	393	False	NA	NA	False	NA	NA	NA	152125521	152144495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
41854	chr1	-	3268	6	FSM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	17	0	-4	0	multi-exon	FALSE	canonical	3	42	junction_5	7.96492310069595	74	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGATGGTTCTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	156501909	156481186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940_156497207_156501099_156501217_156501655
41855	chr1	+	1544	9	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-3	0	intron_retention	FALSE	non_canonical	0	0	junction_7	811.526792148602	15	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724126	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742103_59749690_59749812_59750429
41856	chr13	+	5058	3	FSM	ENSMUSG00000091387.3	ENSMUST00000171324.3	5087	3	23	6	23	-6	multi-exon	FALSE	canonical	3	6	junction_1	3	19	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTCAAATCCAACTCCTC	NA	False	NA	NA	False	NA	NA	NA	97061219	97087408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_97061457_97072387_97072505_97082704
41857	chr15	-	3327	21	NNC	ENSMUSG00000047921.18	novel	4048	22	NA	NA	5	-1011	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	34.8287237779394	3	65	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACCTTGACACGGTGAG	NA	False	NA	NA	False	NA	NA	NA	72932889	72462479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_72462689_72557131_72557222_72565350_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72922443_72922573_72924010_72924157_72929770_72930364_72932809
41858	chr12	-	1491	5	NNC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.119915773218	12	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGGTAGTAGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	77008975	76984046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76984675_76985110_76985530_76986740_76986865_76999942_77000051_77008763
41859	chr1	+	5036	31	ISM	ENSMUSG00000025949.17	ENSMUST00000097707.5	6641	42	-43	13921	3	13193	5prime_fragment	FALSE	canonical	3	51	junction_11	16.2285413871844	91	77	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCTACAATCCCATTCCA	NA	False	NA	NA	False	NA	NA	NA	65225865	65299250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092_65255232_65258912_65259071_65261428_65261541_65262663_65262812_65263320_65263489_65269952_65270013_65272888_65273019_65273412_65273594_65274168_65274244_65277593_65277702_65283554_65283696_65284868_65284996_65285220_65286378_65289344_65289446_65290763_65290836_65291570_65291743_65292510_65292690_65294200_65294315_65294680_65294790_65295097_65295253_65295706_65295798_65297067_65297129_65297941_65298080_65299157
41860	chr17	-	2282	5	NIC	ENSMUSG00000052146.17	novel	887	6	NA	NA	0	-13	intron_retention	FALSE	canonical	3	4719	junction_4	682.855905370965	6	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTAAAGAAAAACATGTCC	NA	False	NA	NA	False	NA	NA	NA	27854218	27849410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27849481_27850173_27850230_27851252_27853218_27853299_27853450_27854177
41861	chr15	+	2354	13	ISM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	410	0	-2	0	intron_retention	FALSE	canonical	3	25	junction_1	18.3490462967425	110	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	98972865	98981290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_98972949_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789
41862	chr4	+	2363	11	NIC	ENSMUSG00000095567.9	novel	2945	18	NA	NA	-971	-186	intron_retention	FALSE	canonical	3	1505	junction_1	194.147083418732	88	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	156324711	156331874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156324825_156325056_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
41863	chr5	+	1520	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	33	10	-17	0	multi-exon	FALSE	canonical	3	2026	junction_5	151.553981719386	888	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	False	NA	NA	False	NA	NA	NA	38377846	38391640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
41866	chr7	-	2092	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	22	1	22	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	1	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7947	False	NA	NA	False	NA	NA	NA	126641621	126626903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
41867	chr19	-	1256	2	Antisense	novelGene_ENSMUSG00000025019.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGTAGACTCTTAATTG	NA	False	NA	NA	False	NA	NA	NA	41515408	41513702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41514138_41514587
41868	chr2	-	4557	2	ISM	ENSMUSG00000063972.14	ENSMUST00000168098.8	5877	9	55016	2	10965	-2	3prime_fragment	FALSE	canonical	3	108	junction_1	0	88	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGCCATCTGTCTGTGA	4405	False	NA	NA	False	NA	NA	NA	38619511	38613387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_38617928_38619494
41869	chr11	+	2022	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	-55	2160	-55	-2160	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	64	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTGGCAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	54988885	55001695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
41870	chr2	-	2095	1	ISM	ENSMUSG00000035392.18	ENSMUST00000102787.10	4342	22	486247	43	51312	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	74	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAAAATTGATTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	37691140	37689045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_37689000_37691100
41871	chr1	+	1489	7	NNC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	-7	intron_retention	FALSE	canonical	0	0	junction_3	2039.73571953711	174	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTATAACATGAACTGTGA	NA	False	NA	NA	False	NA	NA	NA	160862735	160866095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160864742_160865059_160865118_160865564_160865608_160865794_160865843_160866026
41872	chr18	+	2944	5	NNC	ENSMUSG00000024581.14	novel	826	8	NA	NA	-27	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	116.578299867514	1	96	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATAAAACCCAAGACTC	NA	False	NA	NA	False	NA	NA	NA	63111009	63132495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_63111096_63124871_63124951_63127382_63127463_63128033_63128125_63129887
41873	chrX	-	1640	7	NIC	ENSMUSG00000031167.17	novel	1338	7	NA	NA	1	-2	intron_retention	FALSE	canonical	2	12	junction_4	428.038160292592	62	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACAAATCAATACTGATAA	6563	False	NA	NA	False	NA	NA	NA	8011934	8008608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010685_8010811_8010919_8011193_8011312_8011876
41874	chr12	-	2022	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	6	1	-6	-1	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	868	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTTTTCCTGTCTCAGCC	3355	False	NA	NA	False	NA	NA	NA	110855573	110839044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
41875	chr2	-	2802	9	FSM	ENSMUSG00000027551.16	ENSMUST00000109162.9	2848	9	43	3	43	-3	multi-exon	FALSE	canonical	3	7	junction_4	271.408824469655	67	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGATGTGAGCGTCATT	NA	False	NA	NA	False	NA	NA	NA	168797464	168735253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168736454_168741704_168741957_168748003_168748067_168748759_168748910_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
41876	chr19	+	1702	9	NNC	ENSMUSG00000024785.8	novel	1803	9	NA	NA	55	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	130.529690109186	6	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCACTGTAGTGTAAATCA	NA	False	NA	NA	False	NA	NA	NA	29078829	29121246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_29078992_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
41877	chr1	+	3087	18	NNC	ENSMUSG00000026289.16	novel	3130	18	NA	NA	10	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	73.0968452734271	3	91	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATACTTTTCAAACTCC	7335	False	NA	NA	False	NA	NA	NA	87683824	87720131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87702534_87702592_87703886_87704056_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
41878	chr4	-	2659	3	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	52	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	60	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGATGTGTGGTTC	499	False	58553269	NA	False	NA	NA	NA	58553259	58435261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_58437635_58504621_58504782_58553133
41879	chr17	+	1565	5	NNC	ENSMUSG00000046711.17	novel	1631	5	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1959.14271749151	5	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGTCTCTGGTGTAAGG	NA	False	NA	NA	False	NA	NA	NA	27775624	27782640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778645_27779901_27779986_27780432_27780486_27781411
41880	chr5	+	1823	11	NNC	ENSMUSG00000056310.15	novel	3044	16	NA	NA	12	-406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	91.8797583801786	16	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	4940	False	NA	NA	False	NA	NA	NA	130285887	130369998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295882_130316071_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
41881	chr11	-	3917	19	NNC	ENSMUSG00000057897.15	novel	1872	19	NA	NA	26653	-10	intron_retention	FALSE	canonical	2	5	junction_18	32.9330128189532	61	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAACTGCAAATAAAAAA	779	False	NA	NA	False	NA	NA	NA	5988885	5919681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_5988561
41882	chr15	-	992	5	NNC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	-204	0	intron_retention	FALSE	canonical	0	0	junction_4	66.2886679606703	8	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	-5	True	NA	NA	False	NA	NA	NA	76232599	76231239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285_76232381_76232500
41883	chr7	-	2083	11	FSM	ENSMUSG00000030846.16	ENSMUST00000141079.8	4266	11	128	2055	128	0	multi-exon	FALSE	canonical	3	163	junction_6	28.929051142407	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	NA	NA	NA	128063248	128044003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
41884	chr17	-	1441	8	NNC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	13	-7	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	2397.61379675029	1	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTATATAAAGGTTTTTG	4760	False	NA	NA	False	NA	NA	NA	25492344	25480901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484378_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
41885	chr6	+	1281	8	NNC	ENSMUSG00000030007.9	novel	1561	11	NA	NA	8	89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2837.75775238559	4	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTAAGGTTATTTGCTTG	5196	False	NA	NA	False	NA	NA	NA	85429081	85445353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429090_85439014_85439180_85441764_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
41886	chr8	+	726	2	FSM	ENSMUSG00000054400.17	ENSMUST00000212433.2	1304	2	18	560	-3	-560	multi-exon	FALSE	canonical	3	282	junction_1	0	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAATTCCAGCACTCGGG	4831	False	NA	NA	False	NA	NA	NA	104977531	104984446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_104977728_104983916
41887	chr8	+	2629	1	NIC	ENSMUSG00000054400.17	novel	667	4	NA	NA	1490	-773	mono-exon	FALSE	NA	NA	NA	NA	NA	5	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCAGTTAGCTCACTTTC	NA	False	NA	NA	False	NA	NA	NA	104986673	104989302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_104986700_104989300
41888	chr8	+	513	1	NIC	ENSMUSG00000054400.17	novel	667	4	NA	NA	779	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCATATATTTTCTGCA	NA	False	NA	NA	False	NA	NA	NA	104989557	104990070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_104989600_104990100
41889	chr7	+	1710	2	FSM	ENSMUSG00000047084.9	ENSMUST00000138005.2	1709	2	0	-1	0	1	multi-exon	FALSE	canonical	3	448	junction_1	0	59	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTGCTTGGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	79910967	79915123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79911680_79914125
41890	chr10	+	1114	4	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	7082	junction_2	297.278021761149	45	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	80662519	80665119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544
41891	chr14	-	1506	8	ISM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	8764	0	-69	0	3prime_fragment	FALSE	canonical	3	2964	junction_2	198.16711150348	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63737777	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569
41892	chr5	-	2203	2	Genic_Genomic	ENSMUSG00000080935.4	novel	1293	1	NA	NA	-53	1002	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	104	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAGGGTGAACATGAC	1742	False	NA	NA	False	NA	NA	NA	138363867	138361519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_138362096_138362240
41893	chr1	-	571	5	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1439	8	-375	3	3prime_fragment	FALSE	canonical	3	5309	junction_1	708.503484465673	11	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAAATGTGTCGGAGTC	NA	False	NA	NA	False	NA	NA	NA	16173447	16171526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391
41894	chr16	-	2030	3	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	10	794	combination_of_known_splicesites	FALSE	canonical	3	8	junction_1	152	10	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAGTGGAAGCTACACA	NA	False	NA	NA	False	NA	NA	NA	14135229	14116313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_14118074_14131679_14131878_14135157
41896	chr1	+	1292	2	ISM	ENSMUSG00000026020.10	ENSMUST00000188390.2	585	7	4883	-221	4883	-9	3prime_fragment	FALSE	canonical	3	2320	junction_1	0	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTATAAGGCAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	59748750	59750660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_59749812_59750429
41897	chr16	+	2315	7	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	64.9805526463281	24	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	NA	False	NA	NA	NA	3702531	3722634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718556_3718744_3719648_3719990_3721329
41899	chr10	-	1441	9	NNC	ENSMUSG00000000902.14	novel	1622	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	365.303790529198	13	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGTGCAGTAGCATAAA	6886	False	NA	NA	False	NA	NA	NA	75757426	75732606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75732923_75733278_75733411_75740217_75740286_75741903_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
41900	chr6	+	2104	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	0	685	combination_of_known_splicesites	FALSE	canonical	2	20	junction_1	140.564575907303	7	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGCTCTGAGTGGATT	5726	False	NA	NA	False	NA	NA	NA	83254374	83281143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83254554_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
41901	chr12	-	1707	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	-312	3	-256	-3	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	4277	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105189308	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
41902	chr18	+	3814	18	Antisense	novelGene_ENSMUSG00000041225.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	179	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCGACGGGCAGCTCCCT	NA	False	NA	NA	False	NA	NA	NA	6025226	6135817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_6026732_6027576_6027670_6027953_6028092_6028193_6028270_6031727_6031829_6033140_6033263_6034451_6034555_6037019_6037117_6039353_6039456_6049276_6049362_6052864_6052923_6057517_6057591_6061845_6061975_6064340_6064413_6069825_6070094_6111698_6112440_6115813_6115849_6135801
41903	chr5	-	1916	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	-53	104	-53	-7	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	443	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACTGAAATACTGTTTTA	1282	False	NA	NA	False	NA	NA	NA	92110980	92096866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
41904	SIRV4	+	1331	3	NNC	SIRV4C	novel	1567	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	509.5	2	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	999	3403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV4_+_1239_1807_1886_2389
41905	chr7	-	3118	13	Antisense	novelGene_ENSMUSG00000062031.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	163	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGCGAGCTGCCCCTGG	NA	False	NA	NA	False	NA	NA	NA	140527571	140521508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_140521556_140522196_140522484_140522901_140523114_140523193_140523633_140524563_140524676_140524861_140525260_140525364_140525438_140525535_140525675_140525791_140525926_140526018_140526114_140526241_140526340_140526412_140526624_140526698
41906	chr19	+	1868	11	NIC	ENSMUSG00000010110.18	novel	2251	11	NA	NA	24	-11	combination_of_known_junctions	FALSE	canonical	2	12	junction_5	57.3436134194559	58	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTCACTAGTGTTG	6573	False	NA	NA	False	NA	NA	NA	8718800	8732995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720867_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
41907	chr7	-	3690	9	FSM	ENSMUSG00000074272.11	ENSMUST00000098669.8	2873	9	-10	-807	0	1	multi-exon	FALSE	canonical	1	2	junction_6	10.3440804327886	29	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTTGTGGGGTTTTCT	2868	False	NA	NA	False	NA	NA	NA	25177008	25161130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_25163326_25164273_25164306_25164892_25164946_25165741_25165863_25171222_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
41910	chr17	-	938	7	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	1	intron_retention	FALSE	non_canonical	0	0	junction_1	4783.22586406566	69	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884199	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878888_45881418_45881493_45881591_45881726_45881943_45882104_45882338_45882453_45882676_45882838_45884092
41911	chr17	+	4120	25	NNC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	9	51	intron_retention	FALSE	non_canonical	0	0	junction_5	71.2582841187995	2	179	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGGCAAAAGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	66430592	66458435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437762_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66446070_66446392_66446475_66447183_66447229_66447345_66447432_66450420_66450542_66450644_66450768_66451176_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457725_66457797
41912	chr11	+	3859	21	NNC	ENSMUSG00000020473.14	novel	3831	21	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_16	4.12886182863995	30	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCCCTGTTCTGACTGG	8647	False	NA	NA	False	NA	NA	NA	5811921	5822088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_5812399_5813938_5814278_5814823_5814896_5815016_5815089_5815199_5815311_5815384_5815454_5816432_5816511_5816919_5817001_5817094_5817152_5817639_5817750_5817819_5817960_5818296_5818382_5818474_5818620_5818730_5818817_5819064_5819189_5819413_5819611_5819706_5819887_5820075_5820428_5820513_5820654_5820752_5820853_5821244
41913	chr8	-	2717	6	NIC	ENSMUSG00000039720.8	novel	872	6	NA	NA	49	-1	intron_retention	FALSE	canonical	3	26	junction_2	36.2745089560148	5	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATTGCTATGTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	27713807	27687487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27689446_27689537_27689631_27690260_27690373_27690749_27690932_27692399_27692680_27713715
41914	chr3	-	2432	19	FSM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	-13	0	2	0	multi-exon	FALSE	canonical	1	38	junction_10	22.0233461984726	1	20	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGAGTTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	108747840	108700491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
41915	chr5	-	3503	2	Antisense	novelGene_ENSMUSG00000040557.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGTGGGAGATGGCAGGA	191	False	NA	NA	False	NA	NA	NA	134966318	134961461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_134963275_134964628
41916	chr10	-	1482	2	FSM	ENSMUSG00000061983.8_ENSMUSG00000077440.3	ENSMUST00000219783.2	488	2	-993	-1	102	1	multi-exon	FALSE	canonical	3	3174	junction_1	0	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTGATTTTTCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	23662885	23661101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_23661172_23661473
41917	chr2	+	2375	1	FSM	ENSMUSG00000065258.3	ENSMUST00000083324.3	74	1	-323	-1978	-323	1978	mono-exon	FALSE	NA	NA	NA	NA	NA	1	103	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26800949	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26800900_26803300
41919	chr5	+	3079	18	FSM	ENSMUSG00000093445.8	ENSMUST00000031734.16	3078	18	1	-2	1	2	multi-exon	FALSE	canonical	3	234	junction_8	20.6479805391719	160	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGGTGTGTGCCTGCCTG	2185	False	NA	NA	False	NA	NA	NA	137627383	137639358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209
41921	chr8	-	3037	13	FSM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	-15	2496	-15	-2496	multi-exon	FALSE	canonical	3	189	junction_11	21.3085793884894	2	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTAAATAAAACTGGATGG	NA	False	NA	NA	False	NA	NA	NA	23698377	23663776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
41922	chr1	+	2665	13	NNC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	-12	-30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	44.6121402261263	1	58	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATCATAATAAAGTTT	64	False	NA	NA	False	NA	NA	NA	75168823	75176001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75169267_75170821_75170929_75171484_75171588_75171706_75171901_75172212_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
41923	chr18	+	3244	10	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	419.128460816808	1	187	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13105328	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107808_13107899_13109035_13109089_13109525_13109572_13115156_13115233_13117295_13117379_13118275_13118374_13119380_13119433_13122749_13122937_13123549
41924	chr17	+	3049	10	ISM	ENSMUSG00000024182.18	ENSMUST00000074370.11	3777	11	4291	13	361	-13	3prime_fragment	FALSE	canonical	3	153	junction_8	77.4883503789082	144	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAACCTTCCTTGGATA	1561	False	NA	NA	False	NA	NA	NA	26361952	26414772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26362551_26392613_26392755_26401463_26401561_26403150_26403289_26406677_26407196_26407547_26407719_26408959_26409206_26411489_26411598_26412912_26413081_26413908
41926	chr4	-	1208	8	NIC	ENSMUSG00000028692.15	novel	1420	9	NA	NA	53	-71	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	585.899030097668	98	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAGTTCTCCTGCTAAG	NA	False	NA	NA	False	NA	NA	NA	116508824	116493778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116493867_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
41928	chr2	+	3954	22	ISM	ENSMUSG00000016933.18	ENSMUST00000017077.14	4180	32	11374	-787	-126	7	3prime_fragment	FALSE	canonical	3	165	junction_3	24.4783211968627	91	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTTGTTTGTTTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	160594280	160605213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_160594301_160594373_160594495_160595104_160595274_160595361_160595485_160595562_160595665_160595743_160595932_160596204_160596406_160596482_160596603_160596680_160596862_160597660_160597739_160598460_160598565_160598789_160598887_160599133_160599204_160599891_160600050_160601373_160601471_160601601_160601827_160601902_160602052_160602999_160603115_160603224_160603387_160603479_160603569_160603658_160603844_160604013
41930	chr11	-	1585	10	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	1150	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1008.25173223534	1	50	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACTTGCTGTTTTCTT	8979	False	NA	NA	False	NA	NA	NA	106888163	106879460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879598_106880223_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063
41931	chr10	-	1610	11	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	191.418807853356	6	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCACTGATGTTGCTACTT	5786	False	NA	NA	False	NA	NA	NA	62859668	62851208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62855993_62856080_62859416
41932	chr13	+	2969	25	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	2	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	365.656819603057	1	146	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTTTAAATATAAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	6598211	6630047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605509_6605591_6605685_6606577_6606739_6607797_6607929_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617400_6617519_6618699_6618735_6620705_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
41933	chr10	+	2123	1	ISM	ENSMUSG00000019564.13	ENSMUST00000019708.12	5361	9	25850	3	6614	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAGTGGCTTTTTTGATT	7570	False	NA	NA	False	NA	NA	NA	79788726	79790849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79788700_79790800
41934	chrX	-	284	1	NIC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	3995	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	72966012	72965728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72965700_72966000
41935	chr10	+	1750	2	ISM	ENSMUSG00000038587.11	ENSMUST00000215696.2	5931	3	9414	1	9414	-1	3prime_fragment	FALSE	canonical	3	1663	junction_1	0	13	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCACTGTTTTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	4307181	4309469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_4307940_4308477
41936	chr3	+	2722	9	NNC	ENSMUSG00000038393.15	novel	2795	8	NA	NA	6	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	211.943241222739	1	133	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATGACAAAAATAAATGTT	NA	False	NA	NA	False	NA	NA	NA	96465281	96469166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96465802_96466207_96466271_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794_96468373_96468422
41937	chr13	-	3162	12	NNC	ENSMUSG00000039233.13	novel	1853	17	NA	NA	-7	1954	intron_retention	FALSE	canonical	1	3	junction_9	53.0116157550275	1	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAGTCCTTTCAGATTT	NA	False	NA	NA	False	NA	NA	NA	14214188	14175694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_14175764_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14185227_14189319_14189409_14194286_14194473_14202304_14202368_14203860_14203992_14214122
41938	chr2	-	2424	8	NIC	ENSMUSG00000041777.13	novel	2821	10	NA	NA	3	-762	intron_retention	FALSE	canonical	3	42	junction_4	18.3758937031034	12	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTCCTTAAGACTTTAA	NA	False	NA	NA	False	NA	NA	NA	73142908	73114210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73137273_73140800_73140896_73142760
41939	chr14	+	5377	10	NNC	ENSMUSG00000021990.17	novel	3161	5	NA	NA	-8978	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	5.51764845241562	32	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGCTGGTTCTAGTGAT	NA	False	NA	NA	False	NA	NA	NA	60961376	61001995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_60961589_60983093_60983231_60984162_60984343_60984889_60985076_60987411_60987592_60989083_60989317_60991229_60991360_60993660_60994034_60997031_60997107_60998324
41941	chr16	-	2023	19	NIC	ENSMUSG00000022771.18	novel	3088	20	NA	NA	1	-7	intron_retention	FALSE	canonical	3	631	junction_6	49.8522817933141	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTAAGACCTGGGTCCAG	NA	False	NA	NA	False	NA	NA	NA	16929105	16906521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
41942	chr1	+	4265	30	NNC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	11	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	53.3913824003972	1	154	16	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTAACTACCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	10110020	10206984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_10110113_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135549_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156119_10158310_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617_10182768_10183100_10183248_10183827_10183933_10186242_10186310_10186840_10186957_10196564_10196705_10197647_10197789_10200210_10200311_10202678_10202743_10203388_10203499_10204316_10204456_10206158
41943	chr6	+	3060	3	Antisense	novelGene_ENSMUSG00000056305.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGTTCAAATCCCAGCA	NA	False	NA	NA	False	NA	NA	NA	72294725	72299714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_72296225_72296724_72296809_72298237
41945	chr8	-	2347	15	NNC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	134.692109218448	25	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	13154817	13127188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135293_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145876_13147604_13147669_13147966_13148066_13148562_13148637_13150324_13150415_13154774
41947	chr5	-	2094	5	FSM	ENSMUSG00000016510.12	ENSMUST00000016654.9	2131	5	35	2	-3	-2	multi-exon	FALSE	canonical	3	7	junction_4	53.5863788662753	247	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGCTGTGCATTTGTGC	NA	False	NA	NA	False	NA	NA	NA	146900562	146891331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900532
41948	chr8	-	1853	5	NNC	ENSMUSG00000063253.12	novel	409	4	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	146.226707546877	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGTTTTGTGTGTGTGT	7429	False	NA	NA	False	NA	NA	NA	84169124	84161129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84162670_84164181_84164266_84164613_84164686_84165758_84165842_84169050
41949	chr7	-	977	2	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATCCGTTCACACCGACC	NA	False	NA	NA	False	NA	NA	NA	51397615	51396472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51396581_51396746
41950	chr11	+	1559	15	NIC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_14	423.555480306842	61	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	80319466	80364074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80319582_80322530_80322633_80329076_80329202_80329346_80329457_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80363918
41951	chr16	-	3458	6	NNC	ENSMUSG00000022847.16	novel	1558	6	NA	NA	-12	2160	intron_retention	TRUE	non_canonical	0	0	junction_1	11.8760262714428	82	22	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCCGCAATGACAATGGA	NA	False	NA	NA	False	NA	NA	NA	20549313	20541043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20541893_20542992_20545224_20547131_20547219_20547468_20547545_20547813_20547968_20549252
41952	chr4	-	1479	2	Antisense	novelGene_ENSMUSG00000060989.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAGAGCAGTTCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	12234334	12232789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_12232835_12232900
41953	chr16	-	1878	6	NNC	ENSMUSG00000022828.11	novel	3084	5	NA	NA	73	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.426907292349	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTAAAGAGGTGGTTATAC	NA	False	NA	NA	False	NA	NA	NA	37360065	37330158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_37330486_37331598_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
41954	chr4	+	4270	7	NNC	ENSMUSG00000028519.17	novel	641	7	NA	NA	108467	-71	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	2.26691175145591	6	206	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATTTTCCATTAATTT	NA	False	NA	NA	False	NA	NA	NA	104570959	104601970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_104571009_104575406_104575470_104577718_104577828_104584756_104585306_104588821_104588950_104589266_104589378_104598709
41957	chr4	+	1621	16	ISM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	43850	12	-1690	-12	3prime_fragment	FALSE	canonical	3	536	junction_1	51.0544807044396	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAACGTGTATTTAAAG	NA	False	NA	NA	False	NA	NA	NA	108901816	108918346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
41958	chr8	+	2508	17	NIC	ENSMUSG00000001472.18	novel	2582	18	NA	NA	7	5	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	152.624936015548	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGATATGGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	124100569	124130554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_124100804_124108138_124108301_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
41959	chr15	+	2148	13	NIC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	0	-9	intron_retention	FALSE	canonical	3	114	junction_8	18.5801566791624	452	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCGTCTGAAAGAAATCG	3156	False	NA	NA	False	NA	NA	NA	76460611	76479999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
41960	chr14	-	1444	8	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1479.55595931168	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGCTTTTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	63746217	63729799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733358_63733489_63733589_63734393_63734465_63737600_63737770_63746158
41962	chr9	+	2161	14	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	5	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	125.444770845757	8	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGTCCTGTCATTAAT	NA	False	NA	NA	False	NA	NA	NA	114230148	114303446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_114230338_114249420_114249572_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
41963	chr17	+	1583	4	FSM	ENSMUSG00000036036.16	ENSMUST00000173588.8	762	4	-32	-789	-5	-20	multi-exon	FALSE	canonical	1	4	junction_2	1482.71065582226	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313455	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_37313670_37314177_37314208_37316941_37317087_37320310
41964	chr9	-	2617	9	NIC	ENSMUSG00000032366.16	novel	1259	10	NA	NA	0	-9	intron_retention	FALSE	canonical	3	24	junction_7	235.545643135253	61	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGTTTGCTATTCTTT	NA	False	NA	NA	False	NA	NA	NA	66956491	66935256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
41965	chr5	-	2193	4	NIC	ENSMUSG00000047215.15	novel	680	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	5084	junction_3	3219.39414590178	1	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAGAAGATTTTACATGT	NA	False	NA	NA	False	NA	NA	NA	65548741	65545819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65547827_65548081_65548198_65548288_65548336_65548718
41966	chr5	-	2593	11	Antisense	novelGene_ENSMUSG00000036323.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTCAAAGACATTTTGG	NA	False	NA	NA	False	NA	NA	NA	77147673	77135735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_77135844_77137145_77137275_77138117_77138191_77139834_77139901_77141987_77142090_77142512_77142579_77142682_77142761_77143624_77143762_77144497_77144535_77145267_77145430_77146038
41967	chr9	-	3561	10	Antisense	novelGene_ENSMUSG00000111264.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	50	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGGCGGCGGCTCCTTC	5837	False	NA	NA	False	NA	NA	NA	44545413	44516192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_44516249_44518418_44518890_44524124_44524188_44525507_44525612_44534913_44535044_44535769_44535917_44537682_44540066_44541319_44541435_44542676_44542744_44545388
41968	chr11	+	2526	1	ISM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	36667	7	2808	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	72	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGGACTAGGCTTCTTC	242	False	NA	NA	False	NA	NA	NA	97727057	97729583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97727100_97729600
41969	chr11	+	2454	8	NNC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	12	745	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	92.6003041384347	1	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATATCTTTTTGGTGGT	NA	False	NA	NA	False	NA	NA	NA	105017316	105031965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021311_105023285_105023407_105026163_105026271_105028544_105028611_105030386
41970	chr9	-	2957	5	NNC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	-10	-513	intron_retention	FALSE	canonical	1	3	junction_3	119.198101914418	12	96	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGCCCAAGGATCTGC	9438	False	NA	NA	False	NA	NA	NA	57459559	57452051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57452222_57452477_57452687_57453676_57453879_57455810_57458057_57459429
41971	chr2	+	2101	3	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-11	-10	intron_retention	FALSE	canonical	3	4686	junction_2	240.5	1	93	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATCTTGACTGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	26800817	26803320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801139_26801433_26803070_26803176
41972	chr17	-	1484	8	NNC	ENSMUSG00000024436.17	novel	1079	7	NA	NA	-356	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	596.125757174899	6159	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTCTTGACTCCCTTTG	3940	False	NA	NA	False	NA	NA	NA	36227637	36221276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36221849_36222310_36222371_36223229_36223297_36224763_36224819_36225225_36225295_36225383_36225482_36225587_36225697_36227183
41973	chr6	-	3758	12	NNC	ENSMUSG00000030353.16	novel	3076	12	NA	NA	3655	967	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_11	28.0695711838689	108	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCACTGTGCCCTGCTTTCC	5087	False	NA	NA	False	NA	NA	NA	128274046	128203138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128273812
41974	chr18	+	1544	3	Genic_Genomic	ENSMUSG00000059040.6	novel	1791	2	NA	NA	2	-4	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	48179715	48181456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_48179777_48179827_48180913_48181058
41975	chr11	-	2354	16	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	287.277674423583	1	104	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTGACTTTGCTTTAC	NA	False	NA	NA	False	NA	NA	NA	70860753	70833906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834821_70834937_70835065_70835307_70835389_70835630_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
41976	chr7	-	3200	20	NIC	ENSMUSG00000030533.17	novel	3932	22	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	31	junction_19	16.1947975641576	144	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGTTTGTTGTTGTAG	NA	False	NA	NA	False	NA	NA	NA	79989949	79975039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989861
41977	chr7	-	1084	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	885.062974672313	11	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875297	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113869014_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
41978	chr1	-	2722	17	NNC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	154.591788571547	2	107	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTCTTTATTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	160898213	160869086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160869501_160871182_160871261_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878941_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897489
41979	chr4	-	2202	6	NNC	ENSMUSG00000028807.3	novel	2321	5	NA	NA	226	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	69.812892792091	363	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	NA	False	NA	NA	NA	129271683	129247420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129248298_129251497_129251668_129253690_129254494_129261322_129261430_129263021_129263116_129271532
41980	chr13	+	2657	4	FSM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	32	-1643	0	1643	multi-exon	FALSE	canonical	3	59	junction_3	14.6363322667334	190	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGACTTTACTTGAGGCTA	2706	False	NA	NA	False	NA	NA	NA	54722859	54730584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533
41981	chr17	+	3647	9	NIC	ENSMUSG00000023952.14	novel	2966	12	NA	NA	-2	-5	intron_retention	TRUE	canonical	3	39	junction_1	12.5691835454814	36	70	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACACTCTGCTTATTCT	NA	False	NA	NA	False	NA	NA	NA	46472034	46480289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46472253_46474408_46474436_46475119_46475760_46475911_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
41982	chr16	-	1848	15	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-24	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2212.97263486313	2	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCGTCTGTTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	87292785	87280763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280954_87281691_87281812_87282467_87282633_87282727_87282794_87283123_87283240_87283320_87283409_87283491_87283550_87284421_87284603_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292623
41983	chr17	+	2387	13	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	668	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	21.5062975273136	6	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTGATGGCTCGCACCC	NA	False	NA	NA	False	NA	NA	NA	57183170	57195898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57183397_57184362_57184590_57187447_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
41984	chr16	+	2828	18	NIC	ENSMUSG00000022779.17	novel	2950	19	NA	NA	0	-21	combination_of_known_junctions	TRUE	canonical	3	15	junction_12	104.204118296237	14	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAAATGCTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	16688599	16710816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705721_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
41985	chr19	+	1451	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	104	-297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4125.77333117646	6	66	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	947	False	NA	NA	False	NA	NA	NA	8944508	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949877_8950001_8950275_8950473_8954681_8954855_8954948_8955074_8955304
41986	chr4	+	2090	21	NNC	ENSMUSG00000028292.15	novel	526	6	NA	NA	1548	-7	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	219.580480689883	15	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCCCAGAATGTGTGTAG	1557	False	NA	NA	False	NA	NA	NA	34616525	34660156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_34616726_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34640873_34640977_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
41987	chr8	-	2219	13	Antisense	novelGene_ENSMUSG00000005410.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	96	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCGACTTTCGCGGGAA	NA	False	NA	NA	False	NA	NA	NA	75854320	75836209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_75836492_75840832_75840946_75842475_75842644_75844145_75844320_75845882_75845996_75847406_75847550_75847837_75847901_75848160_75848339_75849615_75849733_75850468_75850596_75851426_75851570_75852862_75852989_75853848
41988	chr4	+	2617	3	ISM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	8	0	-6	0	intron_retention	FALSE	canonical	3	4243	junction_1	779.5	21	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	152410317	152416937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152410353_152411937_152412043_152414460
41989	chr1	-	898	1	Intergenic	novelGene_481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGAAGCCAGTGCTCTT	7783	False	NA	NA	False	NA	NA	NA	170965080	170964182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_170964200_170965100
41990	chr19	+	2514	3	FSM	ENSMUSG00000006463.14	ENSMUST00000006632.8	2558	3	40	4	8	-2	multi-exon	FALSE	canonical	3	97	junction_1	34	121	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATCATGTCTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	4928739	4935421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4929058_4930148_4930427_4933503
41991	chr11	+	3594	8	NIC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	8	-10	intron_retention	FALSE	canonical	3	82	junction_1	28.4174421862377	3	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTATGCTTTGGTG	7681	False	NA	NA	False	NA	NA	NA	58197902	58205429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58200267_58200353_58201160_58201243_58202397_58204791_58204892_58205002
41992	chr12	-	2618	10	NIC	ENSMUSG00000041846.16	novel	4516	15	NA	NA	-2149	-19	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	233.005007099275	268	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTGAAGAGTAAGAGAAAT	9259	False	NA	NA	False	NA	NA	NA	101019814	101005789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101011784_101011941_101015918_101016078_101017592_101017696_101017789_101017922_101019726
41993	chr5	+	1481	2	Antisense	novelGene_ENSMUSG00000046000.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGAGCGCTTGACGGCC	NA	False	NA	NA	False	NA	NA	NA	97531673	97539912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_97532731_97539488
41995	chr19	-	2478	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-5	-6	intron_retention	FALSE	canonical	3	822	junction_6	56.9524655597397	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGCTATGACTGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41921742	41912010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41916553_41919794_41919870_41921487_41921604_41921690
41996	chr1	-	2326	8	NIC	ENSMUSG00000026656.16	novel	1578	10	NA	NA	-587	0	intron_retention	FALSE	canonical	2	6	junction_7	25.2271314910218	211	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	170804703	170788126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469_170803617_170803759
41998	chr3	+	2051	5	ISM	ENSMUSG00000001016.13	ENSMUST00000196769.5	1702	13	8521	2	3968	-2	3prime_fragment	FALSE	canonical	3	1281	junction_2	80.5263931888173	2	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGGGCTTTTGGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	90391953	90395268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_90393076_90393491_90393580_90394157_90394405_90394533_90394625_90394765
41999	chr13	+	3176	8	Antisense	novelGene_ENSMUSG00000021592.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	62	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCACCTAGAAACTACACCT	NA	False	NA	NA	False	NA	NA	NA	76208990	76246748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_76210722_76213398_76213624_76214753_76214983_76220222_76220388_76222890_76223171_76239776_76239937_76242006_76242136_76246491
42000	chr7	-	1531	7	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	76	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCAGCACGCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	46505026	46495266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46495341_46497018_46497168_46498394_46498513_46499599_46499775_46500309_46500482_46501299_46501441_46504324
42001	chr11	+	3127	18	NNC	ENSMUSG00000020280.13	novel	3559	18	NA	NA	-96	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	41.0684296869873	2	103	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAAGTCTTTGAGCATTG	NA	False	NA	NA	False	NA	NA	NA	23616414	23682867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23616454_23617277_23617415_23622510_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670228_23675449_23675575_23678974_23679075_23681320
42002	chr7	+	2155	4	Antisense	novelGene_ENSMUSG00000061787.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGGAAACAGGAAACACAA	NA	False	NA	NA	False	NA	NA	NA	80991673	80994971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_80993554_80994063_80994165_80994604_80994756_80994948
42003	chr19	-	1973	3	NNC	ENSMUSG00000056185.6	novel	3023	10	NA	NA	2401	-261	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	87	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGGGACAAATCAAAAATA	NA	False	NA	NA	False	NA	NA	NA	5544992	5542523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5542830_5543176_5543253_5543401
42004	chr7	-	4010	5	NNC	ENSMUSG00000070709.13	novel	603	4	NA	NA	0	-1309	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.7863589374094	10	90	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTAAACTGCATTTGA	NA	False	NA	NA	False	NA	NA	NA	27628885	27608125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27611687_27620121_27620221_27625708_27625836_27626825_27626879_27628715
42005	chr17	+	3011	13	NIC	ENSMUSG00000042345.16	novel	2539	13	NA	NA	-37	307	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	6.05300659911163	91	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCTACACACACTTCGCT	NA	False	NA	NA	False	NA	NA	NA	31431049	31461371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_31431334_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
42006	chr11	-	1530	8	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	351	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	97.4486782771279	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	77784571	77771440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77772081_77772326_77772403_77772943_77773009_77773465_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
42007	chr4	-	1672	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	6	-3	6	3	multi-exon	FALSE	canonical	3	250	junction_2	8.5	614	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGATTCTGATTCTTAC	1053	False	NA	NA	False	NA	NA	NA	132191226	132186038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132187425_132190175_132190320_132191084
42009	chr16	-	1290	5	NNC	ENSMUSG00000003526.13	novel	863	7	NA	NA	1554	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	59.384341370432	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATCACCTTTCTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	17895532	17889592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17890228_17890313_17890403_17891418_17891584_17894105_17894282_17895307
42010	chr13	+	2204	12	NIC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	51	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	39.2994437745846	1	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119599370	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119599656_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
42011	chr16	-	1255	4	NNC	ENSMUSG00000002844.10	novel	2966	4	NA	NA	4	-1374	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	591.765907170132	39	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGTCTGACTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	38273061	38265765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38266467_38267609_38267862_38270714_38270846_38272890
42012	chr13	-	2078	8	NNC	ENSMUSG00000041431.17	novel	2140	8	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1785.80120931297	1	95	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGGAAAGCTTTCACAATT	NA	False	NA	NA	False	NA	NA	NA	100922979	100915259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916294_100916529_100916641_100917291_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240_100922393_100922889
42013	chr15	-	2382	4	NIC	ENSMUSG00000022571.10	novel	1339	6	NA	NA	24	-12	intron_retention	FALSE	canonical	3	262	junction_2	6.23609564462324	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGTTCTCTAAGTTGG	NA	False	NA	NA	False	NA	NA	NA	75793385	75788337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75790314_75790521_75790702_75791077_75791143_75793224
42014	chr1	-	1770	6	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	-7	-35	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	937.815632200701	6	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACAGAATAAAAATTTACC	2331	False	NA	NA	False	NA	NA	NA	93729635	93720332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93727321_93728523_93728633_93729419
42016	chr8	-	1844	14	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-11	4	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	76.1652672088405	620	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578651	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572796_106572854_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
42017	chr15	+	3001	4	NNC	ENSMUSG00000033669.9	novel	2772	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.6637929966641	1	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	NA	NA	NA	76763521	76776595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76763840_76765311_76765439_76772430_76772598_76774206
42018	chrX	-	2299	7	NNC	ENSMUSG00000023074.12	novel	1782	7	NA	NA	7	0	intron_retention	FALSE	canonical	1	3	junction_2	42.1056871323683	256	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTCTCTCTCCGTTC	NA	False	NA	NA	False	NA	NA	NA	52459372	52433474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_52434867_52436580_52436743_52440547_52440671_52444532_52444751_52446286_52446363_52446450_52446705_52459298
42019	chr16	+	2857	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	-96	-919	-96	919	multi-exon	FALSE	canonical	3	143	junction_5	22.2528088114737	450	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCAGCTTCCGGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	8455441	8476314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
42020	chr12	+	1228	7	NNC	ENSMUSG00000020585.5	novel	1773	7	NA	NA	423	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	380.616349564171	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGCTCATAAATTTTACC	NA	False	NA	NA	False	NA	NA	NA	8972086	8988710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986772_8988182
42021	chr4	+	2304	16	ISM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	26472	2194	-547	6	3prime_fragment	FALSE	canonical	3	237	junction_2	351.948796780946	1	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAAGGACGTGTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	137347922	137383648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
42022	chr15	+	1743	9	Antisense	novelGene_ENSMUSG00000105167.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	107	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGACCAGGAGCCAGTGCA	NA	False	NA	NA	False	NA	NA	NA	79961994	79967553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79962098_79962190_79962308_79962531_79963010_79963890_79964051_79964565_79964755_79965099_79965419_79965830_79965987_79966591_79966784_79967524
42023	chr10	+	2852	7	FSM	ENSMUSG00000019826.12	ENSMUST00000080771.10	2844	7	-8	0	-8	0	multi-exon	FALSE	canonical	3	58	junction_6	14.3807355707403	124	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGATACTTGATCTTTAT	NA	False	NA	NA	False	NA	NA	NA	41326370	41341570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41340272
42025	chr4	-	2821	2	NNC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	-9	0	intron_retention	FALSE	non_canonical	0	0	junction_1	0	18	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTTCTGTTGGCCCC	NA	False	NA	NA	False	NA	NA	NA	117744493	117741522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117744291_117744440
42027	chr15	-	2793	3	NIC	ENSMUSG00000022362.14	novel	400	4	NA	NA	41892	-369	intron_retention	FALSE	canonical	3	653	junction_1	25	3	49	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGGGGAACACATGGCA	NA	False	NA	NA	False	NA	NA	NA	57897687	57892007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_57894497_57895379_57895476_57897479
42028	chr1	+	1373	1	Antisense	novelGene_ENSMUSG00000104524.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGATTATTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	135452840	135454213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_135452800_135454200
42029	chr7	-	1603	15	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.257539376818856	1	37	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCCCTTGATAATGTCC	9273	False	NA	NA	False	NA	NA	NA	13045351	13030682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13030719_13032658_13032746_13032963_13033018_13034143_13034269_13034851_13034971_13035307_13035405_13037107_13037219_13037723_13037805_13039845_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
42030	chr11	-	2274	11	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	24	-4	intron_retention	FALSE	canonical	3	35	junction_2	72.0513705629532	28	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCATGTTGCAGCTTC	8327	False	NA	NA	False	NA	NA	NA	82799213	82791601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
42031	chr13	+	2776	13	NNC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_9	38.6738499074849	140	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCTATAGAGTTTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	49574723	49616465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49595428_49595488_49596897_49596971_49599778_49600053_49602774_49602864_49603456_49603560_49612088_49612169_49615009
42032	chr8	+	1562	5	NNC	ENSMUSG00000062380.5	novel	1868	4	NA	NA	-37	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	43.4424907204916	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTCTGCCTGGTATTGGA	NA	False	NA	NA	False	NA	NA	NA	124138291	124148747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345_124147426_124147595
42033	chr8	-	2136	8	NNC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	19	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	40.1974717450473	31	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGCTTCTCATTTTT	5027	False	NA	NA	False	NA	NA	NA	70686757	70672828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676118_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686595
42034	chr14	-	1673	4	NIC	ENSMUSG00000002329.8	novel	1733	6	NA	NA	199	-2	intron_retention	FALSE	canonical	3	347	junction_3	42.166337284616	14	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAAAGGAAAGACAATTT	2562	False	NA	NA	False	NA	NA	NA	55897688	55895352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55896743_55896826_55896935_55897444_55897556_55897624
42036	chr11	+	1085	4	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5894.19558171898	18	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAACGCCTGATGTCCAG	4058	False	NA	NA	False	NA	NA	NA	100210811	100212915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100210960_100211593_100211656_100211773_100211876_100212142
42037	chr5	+	1514	10	NNC	ENSMUSG00000029621.15	novel	1632	10	NA	NA	20	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	115.814986556624	8	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAAGTGTTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	145020659	145045564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038017_145041279_145041328_145041507_145041702_145043854_145043946_145045186
42038	chr19	-	2333	10	NNC	ENSMUSG00000024826.16	novel	3314	11	NA	NA	15	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	301.431031359856	3	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCTGGACAGTTTGTC	1287	False	NA	NA	False	NA	NA	NA	5962884	5947413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952511_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955602_5957028_5957190_5962768
42039	chr10	+	1189	8	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	23	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1936.81599644407	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTCTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	126899507	126903154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900187_126900441_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
42040	chr18	+	1419	8	NNC	ENSMUSG00000024317.16	novel	2422	8	NA	NA	-33	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	166.308540406814	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGACTTTTCTACAATGAA	NA	False	NA	NA	False	NA	NA	NA	21135118	21160528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142_21159808_21160441
42041	chr9	+	1395	9	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	2	5	intron_retention	FALSE	canonical	3	687	junction_5	69.0261499360931	1804	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGTCTGTCTTCTT	2371	False	NA	NA	False	NA	NA	NA	21323134	21331575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21331009_21331331
42042	chr3	+	1359	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	211	345	-4	-345	multi-exon	FALSE	canonical	3	1297	junction_3	204.272758829953	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCAGAGATGCTGTAGC	NA	False	NA	NA	False	NA	NA	NA	96079858	96084535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
42044	chr16	+	1894	11	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-3	-151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1067.59667009597	1	76	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGCTGGCTAAATGTTA	1391	False	NA	NA	False	NA	NA	NA	20354265	20362655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356371_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
42045	chr13	+	2798	14	FSM	ENSMUSG00000021701.9	ENSMUST00000022212.9	2800	14	2	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	11.0769230769231	107	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGTCTCCTGTCCTTGC	NA	False	NA	NA	False	NA	NA	NA	110531581	110537378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_110531972_110532548_110532657_110532809_110532927_110533124_110533255_110533440_110533529_110534004_110534101_110534221_110534421_110534507_110534656_110534906_110535005_110535212_110535343_110535554_110535796_110535913_110536044_110536296_110536408_110536566
42046	chr15	+	2614	1	NIC	ENSMUSG00000022385.12	novel	2692	11	NA	NA	14012	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTGGACGTGTAGAGC	NA	False	NA	NA	False	NA	NA	NA	85758158	85760772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_85758200_85760800
42047	chr10	-	1642	7	ISM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	2293	709	1795	-123	3prime_fragment	FALSE	canonical	3	756	junction_4	66.4540359112138	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAAGATTTCTATTTT	NA	False	NA	NA	False	NA	NA	NA	82597685	82585243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666
42048	chr10	+	1950	18	NNC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	112.25036894692	2	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	NA	False	NA	NA	NA	93289283	93320737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93304966_93307117_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
42049	chr2	-	3060	12	FSM	ENSMUSG00000026836.16	ENSMUST00000112601.9	3050	12	-7	-3	-7	3	multi-exon	FALSE	canonical	3	10	junction_10	14.1281034036818	105	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGATTTTCCTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	58456847	58336449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58406035_58406313_58427789_58427886_58456798
42050	chr1	-	2573	7	NIC	ENSMUSG00000001143.14	novel	3378	8	NA	NA	0	-4	intron_retention	FALSE	canonical	3	153	junction_5	19.8997487421324	93	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGAGTTCTGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	36484338	36462270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
42051	chr12	-	961	4	Antisense	novelGene_ENSMUSG00000020994.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCAGGCTTCGCGACCGC	NA	False	NA	NA	False	NA	NA	NA	59115939	59113779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_59113902_59114562_59114635_59115068_59115582_59115685
42052	chr2	+	912	8	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-11	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1797.80921100757	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTTGACTGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	26800817	26803321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26800843_26801017_26801139_26801384_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
42054	chr17	-	2644	16	ISM	ENSMUSG00000005823.10	ENSMUST00000005975.8	2064	17	143	-96	117	68	intron_retention	FALSE	canonical	3	88	junction_12	31.8032842468964	5	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCCCACTCCCATCCCA	NA	False	NA	NA	False	NA	NA	NA	57554546	57541875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763
42055	chr17	-	1252	3	NNC	ENSMUSG00000024248.15	novel	1076	3	NA	NA	-4	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	53	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATGTTTTTAGTTTGT	9943	False	NA	NA	False	NA	NA	NA	83821763	83809360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_83810167_83811528_83811658_83821446
42058	chr2	-	2814	7	FSM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	-34	7	-34	-7	multi-exon	FALSE	canonical	3	37	junction_2	5.5876848714134	92	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCCGACTCTGTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	35227022	35204004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_35206068_35210342_35210478_35211494_35211699_35213675_35213759_35215325_35215399_35216432_35216537_35226870
42059	chr9	+	2680	13	FSM	ENSMUSG00000032307.17	ENSMUST00000059555.15	3456	13	776	0	235	0	multi-exon	TRUE	canonical	3	762	junction_1	63.2035402489449	161	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCACCTTTCCCTCTT	NA	False	NA	NA	False	NA	NA	NA	55056913	55114813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55057111_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
42060	chr3	+	3058	1	ISM	ENSMUSG00000005774.13	ENSMUST00000137088.8	4333	10	4181	215	2818	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTGAGCCTTATGTTTC	1440	False	NA	NA	False	NA	NA	NA	94865599	94868657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_94865600_94868700
42061	chr17	+	3645	5	NIC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	71	-1	intron_retention	FALSE	canonical	3	194	junction_2	29.2147223159831	5	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTCTTGGCCCGTTGGC	1016	False	NA	NA	False	NA	NA	NA	24851763	24857809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24857504_24857581
42062	chr2	+	1792	6	NNC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	243	-1367	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	157.225188821639	22	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTTCCTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	172212896	172223001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219931_172222332
42064	chr2	+	2761	7	NNC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	235.663189507587	2	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGAAAGTCTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	172391512	172400533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_172391803_172393326_172393810_172393915_172393968_172395403_172395553_172395960_172396080_172397984_172398130_172399010
42065	chr1	-	2398	9	NNC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	6928	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	65.1402333431498	2	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAAAACATTTCA	NA	False	NA	NA	False	NA	NA	NA	151271850	151244127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270692_151270736
42066	chr3	-	2135	9	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	21	-8	intron_retention	FALSE	canonical	3	1645	junction_8	201.288932569578	59	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGAAAGATATTTCTAGT	NA	False	NA	NA	False	NA	NA	NA	54642767	54636110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
42067	chr17	-	1975	8	NIC	ENSMUSG00000060475.14	novel	2051	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	239.599069876563	336	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGTTTGTTTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	13213056	13185685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13212949
42068	chr1	-	5989	2	Genic_Genomic	ENSMUSG00000009418.17	novel	12767	30	NA	NA	-67	-2957	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	116	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACAGGGACTGGGCATG	NA	False	NA	NA	False	NA	NA	NA	135395478	135389374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_135389596_135389710
42069	chr17	+	2885	9	Antisense	novelGene_ENSMUSG00000024459.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	132	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCGCAGCCATACACACAC	2176	False	NA	NA	False	NA	NA	NA	37278250	37299636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_37278780_37278996_37279194_37279356_37280207_37280327_37280612_37281214_37281458_37281728_37281893_37298312_37298416_37298547_37298823_37299396
42070	chr12	+	2585	13	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-11364	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	117.524465538032	3	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTGAAATAATAAAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	76872823	76968158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76872943_76878078_76878198_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
42072	chr2	-	1776	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-10786	829	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	236.173664916307	25	57	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGGATCTAAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	176969615	176955617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176956832_176956999_176957402_176958542_176958604_176969516
42073	chr13	-	3288	28	NNC	ENSMUSG00000021357.15	novel	4256	28	NA	NA	12	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	46.7129400212842	1	82	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCACAATAAATAGTGGAG	NA	False	NA	NA	False	NA	NA	NA	31158025	30997932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_30998063_30998870_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090565_31090714_31090861_31095152_31095234_31109705_31109831_31119477_31119605_31122098_31122276_31124592_31124754_31157978
42074	chr5	+	3919	10	NNC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	13684	23436	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	203	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGCTCTGTGATTGCA	NA	False	NA	NA	False	NA	NA	NA	4131156	4154746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_4133303_4136462_4136627_4137771_4137874_4141844_4142037_4142380_4142507_4149122_4149292_4150140_4150272_4151177_4151355_4152927_4153035_4154141
42076	chr7	-	4004	12	NIC	ENSMUSG00000000605.10	novel	2445	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	11.8732980511554	23	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCTTTGGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	7301773	7285307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294726_7294818_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7301690
42077	chr12	+	2472	4	NNC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	30845	-3	intron_retention	FALSE	canonical	2	3	junction_1	90.3191870842268	4	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCATGTTGTCACCTGTC	7585	False	NA	NA	False	NA	NA	NA	117838467	117842438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_117839460_117839577_117839684_117840640_117840778_117841201
42078	chr8	+	2534	6	ISM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	78	192	41	-192	intron_retention	FALSE	canonical	3	683	junction_2	51.1523215504438	7	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAAATTCTCCTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	22901454	22919489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763
42079	chr7	+	2682	4	FSM	ENSMUSG00000034538.9	ENSMUST00000051435.8	2725	4	31	12	7	-12	multi-exon	FALSE	canonical	3	16	junction_3	9.89949493661167	77	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCATGTATTTTTAAT	3000	False	NA	NA	False	NA	NA	NA	7174359	7186549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_7174558_7175135_7175175_7177553_7177681_7184231
42081	chr7	+	1174	10	Antisense	novelGene_ENSMUSG00000001794.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	302	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCAGTCCCATGCCTC	8520	False	NA	NA	False	NA	NA	NA	29886414	29893361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_29886959_29887095_29887152_29889473_29889593_29889902_29889982_29890082_29890153_29891586_29891652_29891744_29891802_29891926_29892018_29892291_29892326_29893302
42083	chr7	-	2989	10	NNC	ENSMUSG00000039194.17	novel	2142	9	NA	NA	-862	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	7.48001452431415	91	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTTTCATGATGAACTT	NA	False	NA	NA	False	NA	NA	NA	79037658	79024617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79025467_79025644_79025756_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033793_79034406_79034528_79036436_79037545_79037641
42084	chr5	+	1198	5	NNC	ENSMUSG00000029131.15	novel	1605	8	NA	NA	-17	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	867.693890436022	19	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTCATGAGTGGGGTCT	4578	False	NA	NA	False	NA	NA	NA	29940969	29972079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29970550_29970646_29971322
42085	chr15	-	222	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	199	-43	199	43	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTGG	NA	False	NA	NA	False	NA	NA	NA	90648660	90648438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_90648400_90648700
42086	chr11	+	1507	2	FSM	ENSMUSG00000056938.17	ENSMUST00000162338.2	605	2	21	-923	21	-28	multi-exon	FALSE	canonical	3	68	junction_1	0	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGATGAAGCTGGTGGCA	NA	False	NA	NA	False	NA	NA	NA	102992572	102994972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102992615_102993507
42087	chr3	-	2242	5	NIC	ENSMUSG00000028076.13	novel	1946	6	NA	NA	17	-10	intron_retention	FALSE	canonical	3	57	junction_3	14.2894191624432	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAATGTATCCAGA	NA	False	NA	NA	False	NA	NA	NA	86906599	86903150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86903909_86903996_86904094_86904644_86905658_86905939_86906213_86906498
42088	chr4	+	1574	7	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	258	749	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	213.211684065912	1	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTGAGGAGCTTACT	5306	False	NA	NA	False	NA	NA	NA	89055616	89098460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066484_89074701_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
42089	chr10	+	1775	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	334	-643	334	643	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	3053	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGTGTTTGAGTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	13428971	13439763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
42090	chr4	+	954	3	Genic_Genomic	ENSMUSG00000059195.11	novel	1128	1	NA	NA	-75	694	multi-exon	FALSE	non_canonical	0	0	junction_1	0	61	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACTGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103420523	103422420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_103420973_103421771_103421939_103422082
42091	chr17	-	2451	2	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	2454	intron_retention	FALSE	canonical	3	37	junction_1	0	30	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCCACAGCCAATTCATT	NA	False	NA	NA	False	NA	NA	NA	69584203	69579902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_69580313_69582162
42092	chr8	-	3952	22	NNC	ENSMUSG00000031555.16	novel	4044	22	NA	NA	-46	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	31.0462313449736	81	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTTGTCGTCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	25506881	25439629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_25441027_25445947_25446016_25452902_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
42094	chr11	-	1909	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	9	-3	9	3	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	1131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTGTTGGTGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	100629032	100605831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
42095	chr1	-	2993	13	Antisense	novelGene_ENSMUSG00000026159.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	215	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGGCCGCCATGGCCGCG	NA	False	NA	NA	False	NA	NA	NA	82874099	82817456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_82817611_82836076_82836171_82848405_82848521_82853007_82853170_82853889_82854044_82857726_82857847_82859946_82860157_82860899_82861080_82863828_82863908_82864094_82864186_82871141_82871301_82872193_82872287_82872717
42097	chr11	-	1837	7	NIC	ENSMUSG00000020775.14	novel	1411	9	NA	NA	36	-7	intron_retention	FALSE	canonical	3	763	junction_6	34.4722110305291	820	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGATGCCAATATGTCT	446	False	NA	NA	False	NA	NA	NA	116029655	116022653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116026152_116029267_116029448_116029536
42099	chr12	-	626	2	Genic_Genomic	ENSMUSG00000043483.5	novel	636	1	NA	NA	11	138	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	96889821	96889058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_96889397_96889533
42101	chr3	-	2846	1	FSM	ENSMUSG00000048109.11	ENSMUST00000197769.2	5967	1	4315	-1194	4315	-520	mono-exon	FALSE	NA	NA	NA	NA	NA	76	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCTGCCTGGAAGTG	3462	False	NA	NA	False	NA	NA	NA	107236102	107233256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107233300_107236100
42103	chr4	+	2861	5	Antisense	novelGene_ENSMUSG00000066149.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	933	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACACCTCCCAGGCTG	NA	False	NA	NA	False	NA	NA	NA	62310587	62326855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_62312653_62312819_62313265_62320966_62321155_62322693_62322792_62326790
42105	chr6	-	4472	22	FSM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	-27	4442	-27	-4439	multi-exon	TRUE	canonical	3	12	junction_1	6.19450418404635	23	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATACGCATATGTGTACG	6426	False	NA	NA	False	NA	NA	NA	112924254	112699373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_112700163_112704173_112704502_112706609_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726384_112731531_112731635_112736709_112736738_112743828_112743914_112748327_112748526_112750558_112750661_112752459_112752682_112753980_112754110_112757833_112758020_112772733_112772797_112793551_112793715_112806399_112806593_112923390
42106	chr6	+	4410	1	ISM	ENSMUSG00000005893.15	ENSMUST00000113460.8	7647	15	77255	3	4468	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	94	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGTATGTGTGCTGCTCA	8774	False	NA	NA	False	NA	NA	NA	92145625	92150035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_92145600_92150000
42107	chr7	+	3082	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	76	208	27	-208	multi-exon	FALSE	canonical	3	147	junction_1	0	1	112	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGAGCCTTCACATGGT	3309	False	NA	NA	False	NA	NA	NA	18962334	18981585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18962510_18978678
42108	chr7	-	2286	8	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	67	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	45.3332332932069	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGTGTGTATGAGT	NA	False	NA	NA	False	NA	NA	NA	80550900	80540470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550643
42109	chr18	+	918	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	45	656	45	11	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCGCTAGCCCTATCCC	NA	False	NA	NA	False	NA	NA	NA	36893317	36896207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
42110	chr4	-	1943	6	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	22	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	727.67069475141	1	71	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCCTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137084988	137047013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048504_137056023_137056126_137056344_137056436_137059717_137059791_137063285_137063441_137084956
42111	chr1	-	1915	9	NNC	ENSMUSG00000003051.14	novel	2095	9	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	205.173364194771	2	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTTGGCCTGAGCTCTC	NA	False	NA	NA	False	NA	NA	NA	135186195	135181319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184963_135185352_135185521_135186086
42112	chr2	-	2013	14	NIC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	1	111	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	41.2504258539969	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTATGTGGGAACTTCTA	NA	False	NA	NA	False	NA	NA	NA	12424280	12352331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_12353015_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
42113	chr14	-	3966	11	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-35	-73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	92.301733461512	5	124	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCTTGTTTTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	58127768	58070232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58073012_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111464_58127515
42114	chr2	-	1837	13	NNC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	1	37	junction_11	282.365257935336	8	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAATGACTCATTGTTTCA	8443	False	NA	NA	False	NA	NA	NA	155434637	155405105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429389_155429497_155434613
42115	chr5	+	1593	12	NNC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_5	502.73133320734	1059	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCTATGCTTAATTGC	NA	False	NA	NA	False	NA	NA	NA	134611596	134627182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619491_134619620_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
42116	chr8	-	2111	6	NIC	ENSMUSG00000038000.11	novel	1182	9	NA	NA	3	-1	intron_retention	FALSE	canonical	3	202	junction_4	10.4307238483242	506	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGAGAGAGATTCAGG	NA	False	NA	NA	False	NA	NA	NA	106427713	106424790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426528_106426635_106427472_106427551
42117	chr11	+	3444	1	Genic_Genomic	ENSMUSG00000020300.15	novel	NA	NA	NA	NA	58917	1	mono-exon	FALSE	NA	NA	NA	NA	NA	56	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTTACTATACTTATT	7859	False	NA	NA	False	NA	NA	NA	31882191	31885635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_31882200_31885600
42118	chr10	-	3275	9	NNC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	20	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	189.211356688757	2	153	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTCACAGAAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	127047404	127032939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127035014_127035181_127035275_127035451_127035726_127036052_127036167_127036875_127037055_127041543_127041688_127042482_127042580_127044734_127044837_127047206
42119	chr19	-	2628	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	32	-1546	-5	1546	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	514	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACATGCCTATGGGTGTC	NA	False	NA	NA	False	NA	NA	NA	24257937	24237270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
42120	chr11	-	3100	21	Antisense	novelGene_ENSMUSG00000020536.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	20	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTGGGGAAGCCATGCT	NA	False	NA	NA	False	NA	NA	NA	60603889	60593636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_60593707_60595176_60595248_60595489_60595578_60595675_60595806_60596789_60596941_60597009_60597180_60597261_60597395_60597571_60597632_60597783_60597938_60598012_60598235_60598401_60598473_60599367_60599522_60599612_60599716_60600256_60600550_60600802_60600950_60601109_60601265_60602159_60602456_60602823_60603089_60603202_60603318_60603445_60603552_60603743
42121	chr7	+	2868	3	NNC	ENSMUSG00000045252.12	novel	4140	2	NA	NA	-27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	112	2	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTGTCAGGCCTAGC	5007	False	NA	NA	False	NA	NA	NA	24776681	24781906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24776812_24778959_24780575_24780783
42124	chr1	-	2368	7	ISM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	87	21753	-6	1459	5prime_fragment	FALSE	canonical	3	1166	junction_2	99.1878128714522	20	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCAGGCTCCTCTG	NA	False	NA	NA	False	NA	NA	NA	92401495	92388484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
42126	chr12	+	2244	3	ISM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	22845	4	18666	-4	3prime_fragment	FALSE	canonical	3	152	junction_1	3	13	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTTCAGTGTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	8386276	8393820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_8386396_8387632_8387769_8391831
42127	chr8	+	2485	16	NNC	ENSMUSG00000031657.17	novel	3251	15	NA	NA	12	-2	intron_retention	FALSE	canonical	0	0	junction_15	71.3409341744898	36	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTGTGTCATACAGA	NA	False	NA	NA	False	NA	NA	NA	88864495	88898653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486_88897784_88898534
42128	chr19	-	2349	20	NNC	ENSMUSG00000025027.19	novel	2956	20	NA	NA	-5063	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_19	437.182030078802	1	104	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTCTGCTTTGTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	53013790	52979614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53005858_53005945_53013689
42129	chr10	+	1852	12	NNC	ENSMUSG00000058799.17	novel	1365	13	NA	NA	0	-9	intron_retention	FALSE	non_canonical	0	0	junction_10	814.175189789901	1	82	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTCATGGGATGCTGT	NA	False	NA	NA	False	NA	NA	NA	111309141	111332736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111330018_111330058_111331930
42130	chr8	+	2820	7	Genic_Genomic	ENSMUSG00000088420.3	novel	103	1	NA	NA	-258	17867	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCCTTCCCCTGCCCGGG	NA	False	NA	NA	False	NA	NA	NA	18982746	19000974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_18984621_18987241_18987357_18989084_18989252_18990626_18990838_18991959_18992145_18998573_18998758_19000890
42131	chr7	-	1934	16	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-1	30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	781.041686182982	1	87	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTACTTTTATCTGTTA	NA	False	NA	NA	False	NA	NA	NA	33929715	33901553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903550_33904996_33905070_33905230_33905361_33907030_33907178_33907678_33907736_33915380_33915466_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
42132	chr12	+	1420	13	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	-20	-6	combination_of_known_splicesites	FALSE	canonical	2	11	junction_4	301.400469567576	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTACTGAAGGGTAATTT	NA	False	NA	NA	False	NA	NA	NA	105976521	106041453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
42133	chr13	-	2345	18	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	44	-154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	249.33797465596	1	113	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACATAGTTTGATGACT	NA	False	NA	NA	False	NA	NA	NA	9046042	9022669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9022759_9022817_9023311_9024198_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
42134	chr11	+	1306	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATATATCATGCCTCCAT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655683_75656158
42135	chr7	-	2176	4	NIC	ENSMUSG00000059772.13	novel	1567	5	NA	NA	-55	-8	intron_retention	FALSE	canonical	3	82	junction_2	8.83176086632785	312	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTAAATTAAAAACAAAAGT	4932	False	NA	NA	False	NA	NA	NA	126295011	126289857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126291228_126291492_126291832_126291924_126291977_126294596
42136	chr2	-	3226	19	NNC	ENSMUSG00000098950.8	novel	5505	17	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	135.516524435442	1	140	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	155953864	155913764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155914894_155915314_155915582_155915718_155915989_155916147_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920338_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155940149_155940293_155945268_155945350_155953705
42137	chr18	+	2063	19	NIC	ENSMUSG00000024410.16	novel	2170	20	NA	NA	-7	8	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	65.1417258325602	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACCTACAACATCCTCAA	NA	False	NA	NA	False	NA	NA	NA	12301788	12323039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_12301960_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
42138	chrX	+	2789	5	Antisense	novelGene_ENSMUSG00000031200.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGTGTTCAGACCAAACC	237	False	NA	NA	False	NA	NA	NA	74448751	74456145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_74448825_74453151_74454741_74454826_74454874_74454955_74455127_74455236
42140	chr1	+	4845	32	NIC	ENSMUSG00000041642.19	novel	9115	35	NA	NA	4	6	combination_of_known_splicesites	FALSE	canonical	3	14	junction_27	13.309413160168	1	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCAGCAGGAGCTCAT	6219	False	NA	NA	False	NA	NA	NA	136059171	136100043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841_136082034_136083834_136084035_136085200_136085309_136086018_136086088_136086981_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896
42141	chr2	-	2719	14	FSM	ENSMUSG00000026853.16	ENSMUST00000028207.13	3833	14	278	836	-11	561	multi-exon	TRUE	canonical	3	47	junction_2	7.8897731722819	157	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGATTCAGCTGAGGGGC	NA	False	NA	NA	False	NA	NA	NA	30305547	30291948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30292806_30293500_30293639_30294539_30294603_30294949_30295086_30295177_30295301_30295396_30295517_30296379_30296481_30296967_30297147_30297717_30297893_30298067_30298234_30298752_30298807_30299968_30300088_30302994_30303259_30305323
42142	chr12	-	2640	4	NNC	ENSMUSG00000071456.7	novel	3569	3	NA	NA	9	-185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.6333157709821	9	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTAAAATAGAAATTTA	NA	False	NA	NA	False	NA	NA	NA	3476705	3454062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_3454417_3454854_3456712_3457700_3457925_3476500
42145	chr8	-	1484	1	Antisense	novelGene_ENSMUSG00000071041.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGAGGAAGACAGACGCGT	NA	False	NA	NA	False	NA	NA	NA	100758669	100757185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_100757200_100758700
42146	chr8	-	3327	4	NIC	ENSMUSG00000054648.9	novel	3180	5	NA	NA	-9	0	intron_retention	FALSE	canonical	3	68	junction_3	10.6770782520313	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	NA	False	NA	NA	NA	70169532	70157786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70160345_70160760_70161116_70163335_70163635_70169417
42147	chr6	+	1513	12	FSM	ENSMUSG00000068328.11	ENSMUST00000203915.4	1491	12	-18	-4	-1	0	multi-exon	FALSE	canonical	3	25	junction_10	313.3608012109	472	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5405	False	NA	NA	False	NA	NA	NA	83031693	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034194_83034376_83034478
42148	chr7	+	2009	11	FSM	ENSMUSG00000049643.16	ENSMUST00000187960.7	1989	11	-20	0	-1	0	multi-exon	FALSE	canonical	3	17	junction_10	97.3365296278843	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	429	False	NA	NA	False	NA	NA	NA	27252690	27281524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761_27280117_27280775
42149	chr18	+	1420	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234280.2	600	6	-25	-795	-4	0	multi-exon	FALSE	canonical	3	187	junction_3	477.712298355401	45	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	NA	False	NA	NA	NA	47091916	47221062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47123545_47123657_47219318_47219379_47220094
42150	chr12	-	1555	13	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	3553	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	284.373824783896	7	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87515486	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87496889_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379
42151	chr6	-	2598	9	FSM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	77	-4	18	4	multi-exon	FALSE	canonical	3	33	junction_1	3.903123748999	128	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATGCTGTGGTATTAAGT	NA	False	NA	NA	False	NA	NA	NA	43643135	43321930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
42153	chr1	+	2768	13	NIC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	33.1268605347517	8	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	NA	False	NA	NA	NA	180468906	180518252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180468963_180475865_180475899_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
42154	chr10	+	2672	2	FSM	ENSMUSG00000098811.3_ENSMUSG00000078440.11	ENSMUST00000145416.2	495	2	74	-2251	74	0	multi-exon	FALSE	canonical	3	792	junction_1	0	6	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	81220374	81224186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81220413_81221552
42155	chr10	-	2023	14	NNC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_13	66.0214238135385	15	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	NA	False	NA	NA	NA	30476678	30410710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30475369_30475591_30476585
42156	chr17	-	478	1	ISM	ENSMUSG00000085912.3	ENSMUST00000133221.3	3218	2	18830	2442	11993	-407	mono-exon	FALSE	NA	NA	NA	NA	NA	24	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCATTGACACTTATGTT	NA	False	NA	NA	False	NA	NA	NA	29279323	29278845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_29278800_29279300
42157	chr17	-	1217	1	ISM	ENSMUSG00000085912.3	ENSMUST00000133221.3	3218	2	19459	1074	12622	547	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGACTTCTCAACATCTC	NA	False	NA	NA	False	NA	NA	NA	29278694	29277477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_29277500_29278700
42158	chr8	+	1798	8	NIC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	65	0	intron_retention	FALSE	canonical	3	1342	junction_4	24.2705835218232	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	795	False	NA	NA	False	NA	NA	NA	70755510	70765640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70757347_70758284_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355
42159	chr11	-	1721	3	NNC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	0	-8	intron_retention	FALSE	non_canonical	0	0	junction_2	929	871	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTTGAGAATGTGTCC	6003	False	NA	NA	False	NA	NA	NA	116743920	116740739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116741788_116742846_116743152_116743552
42160	chr10	-	3353	9	NNC	ENSMUSG00000019873.9	novel	2925	9	NA	NA	26	578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	56.3869167005964	64	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCCCCATACCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	66932599	66846872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_66848265_66848311_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
42161	chr7	-	2254	5	FSM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	15	0	15	0	multi-exon	FALSE	canonical	3	86	junction_2	8.89873586527884	151	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACACTGTCTCTTCCTTGA	NA	False	NA	NA	False	NA	NA	NA	78496996	78477221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
42162	chr12	+	2408	3	FSM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	25	0	14	0	multi-exon	FALSE	canonical	3	213	junction_2	1	252	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	NA	False	NA	NA	NA	111644563	111650336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_111645397_111647235_111647503_111649028
42163	chr11	+	2665	14	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	35	173	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	96.0176265869169	6	115	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	NA	False	NA	NA	NA	29476491	29495452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476566_29476692_29476838_29479928_29480155_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
42164	chr1	-	939	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	3076.00092110953	11	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16174626	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173597_16173733_16173907_16174588
42165	chr17	-	2801	14	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_11	153.624917850638	6	35	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5833	False	NA	NA	False	NA	NA	NA	46593925	46568799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46571805_46571836_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575019_46575117_46575808_46575905_46582725_46582856_46591341_46591471_46593271_46593366_46593885
42166	chr14	-	1813	19	NNC	ENSMUSG00000115232.2	novel	3275	23	NA	NA	2240	-70	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	129.143426822111	1	21	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGAAGCGCTGGGACAGTT	9774	False	NA	NA	False	NA	NA	NA	55873112	55866602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869766_55871168_55871235_55871471_55871652_55871736_55871867_55872463_55872504_55872588_55872669_55872819_55872907_55872986
42167	chr2	+	1939	11	NNC	ENSMUSG00000035437.16	novel	4247	19	NA	NA	-18572	291	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	76.4418733417752	7	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCTAAGCACTGGGATTAA	NA	False	NA	NA	False	NA	NA	NA	37362304	37399441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_37362527_37363590_37363796_37365303_37365479_37373782_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594_37385770_37392879_37392974_37398939
42168	chr15	-	2033	11	FSM	ENSMUSG00000023021.16	ENSMUST00000109035.11	2775	11	31	711	31	0	multi-exon	FALSE	canonical	2	12	junction_1	103.150569557322	228	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	99670312	99633472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99634318_99635427_99635535_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
42169	chr8	+	2394	14	NNC	ENSMUSG00000047866.21	novel	2859	15	NA	NA	12	-2581	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	71.1187023397166	1	73	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCATGACTGGGGAAATTA	NA	False	NA	NA	False	NA	NA	NA	87350683	87440678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368401_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530
42170	chr9	+	2335	8	NNC	ENSMUSG00000042195.10	novel	1685	2	NA	NA	-13293	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	62.0296176788778	13	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	NA	False	NA	NA	NA	53704707	53725438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_53704842_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
42172	chr10	+	811	5	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	3300	15	-1430	5prime_fragment	FALSE	canonical	3	6189	junction_1	376.411012059956	47	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGCAGCCGAGCGTGCC	2196	False	NA	NA	False	NA	NA	NA	81012479	81015032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914
42173	chr7	+	1564	4	NIC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	58	0	intron_retention	FALSE	canonical	3	19383	junction_2	612.04702070638	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050245	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28050277_28050416_28051699_28051787_28051836_28051918
42174	chrX	+	1589	8	NNC	ENSMUSG00000031349.5	novel	2168	8	NA	NA	24	-382	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	134.879689398534	13	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAGACTCTGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	71962186	72001738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_71962300_71969899_71970017_71973229_71973281_71992835_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
42175	chr11	+	2265	4	FSM	ENSMUSG00000018986.11	ENSMUST00000214041.2	1966	4	35	-334	35	320	multi-exon	FALSE	canonical	2	3	junction_1	4.49691252107735	6	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCTCTCCTTATCTGCA	3832	False	NA	NA	False	NA	NA	NA	83082193	83106300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83082235_83084868_83085036_83103369_83104440_83105313
42176	chr11	+	672	1	Intergenic	novelGene_2426	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTTGTCCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	83108430	83109102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_83108400_83109100
42177	chr10	-	2358	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	155	0	5	0	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	102	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	NA	False	NA	NA	NA	42354406	42188580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
42179	chrX	+	3585	4	NIC	ENSMUSG00000071723.8	novel	1925	5	NA	NA	1	-9	intron_retention	FALSE	canonical	2	4	junction_1	4.71404520791032	28	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCTGTAAGTTATGTT	4264	False	NA	NA	False	NA	NA	NA	93679682	93686841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_93681987_93682698_93682841_93684531_93685195_93686365
42180	chr4	-	3114	28	NNC	ENSMUSG00000040738.11	novel	3220	27	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	90.2662727711741	5	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTACAATTTAGTGGT	-8	True	NA	NA	False	NA	NA	NA	11254228	11204382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980_11254053_11254128
42181	chr6	+	644	1	ISM	ENSMUSG00000030180.16	ENSMUST00000005108.10	10944	28	76991	2816	10911	2047	mono-exon	FALSE	NA	NA	NA	NA	NA	152	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCGGCTCTTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	120418075	120418719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_120418100_120418700
42182	chr1	+	1966	15	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	0	-83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	858.986211312201	2	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCTTATGCCTAAATTAA	NA	False	NA	NA	False	NA	NA	NA	185095254	185160474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099730_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185160387
42184	chr4	+	3083	12	NIC	ENSMUSG00000028759.14	novel	3361	13	NA	NA	44	-14	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.9615581863273	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTTTAAAAGCTGCTGA	5113	False	NA	NA	False	NA	NA	NA	137944485	137970445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137944606_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
42185	chr5	+	1430	7	NNC	ENSMUSG00000029304.15	novel	1456	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2841.03880160448	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583115_104584250_104584309_104584406_104584443_104585520_104585592_104586100_104586134_104587130_104587413_104588094
42186	chr5	-	1921	13	NNC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	49	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	218.172125600153	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCTTACATTAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	22755253	22691495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727392_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738899_22751395_22751597_22752921_22753015_22755189
42187	chr5	+	1806	3	Intergenic	novelGene_833	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	32	292	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGAGCATGCCATCTGT	663	False	NA	NA	False	NA	NA	NA	115341982	115344405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_115342214_115342747_115344084_115344166
42188	chr17	+	2385	6	NIC	ENSMUSG00000034254.18	novel	2190	7	NA	NA	32	-10	intron_retention	FALSE	canonical	3	118	junction_1	5.38887743412299	407	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAGAGACGTGGGGTTC	NA	False	NA	NA	False	NA	NA	NA	34824866	34832382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34825146_34829418_34829619_34829845_34830424_34830578_34830675_34830764_34830841_34831226
42189	chr13	+	1608	4	NIC	ENSMUSG00000021486.8	novel	2644	5	NA	NA	88	0	intron_retention	FALSE	canonical	3	1299	junction_1	66.594961437701	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	5641	False	NA	NA	False	NA	NA	NA	55469919	55473085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_55470892_55472143_55472258_55472339_55472419_55472642
42191	chr9	+	3164	12	NNC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	3	-13	intron_retention	FALSE	non_canonical	0	0	junction_8	96.518571843681	1	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCATCTTTTCTTCTAGG	NA	False	NA	NA	False	NA	NA	NA	107828157	107848711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840615_107845792_107845949_107847202_107847252_107847667_107847818_107847906
42192	chr8	+	3402	1	NIC	ENSMUSG00000004677.18	novel	6316	40	NA	NA	-3715	-5505	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	81	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGAATACGAGCCAGGAC	2149	False	NA	NA	False	NA	NA	NA	71782745	71786147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71782700_71786100
42195	chr16	-	2489	1	Intergenic	novelGene_3575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCCAGAGTGTATGATT	NA	False	NA	NA	False	NA	NA	NA	7764182	7761693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_7761700_7764200
42196	chr2	-	2545	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61366	0	intron_retention	FALSE	canonical	2	7	junction_1	23.1600465263358	111	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	93760868	93685706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_93686326_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
42197	chr15	-	1037	9	NIC	ENSMUSG00000055762.17	novel	2842	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_5	1349.65903101487	309	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	75781155	75767336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772539_75772612_75772980_75773105_75781093
42198	chr15	-	1599	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2236.04000162987	2	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGAGTTTTGTTTCTGG	158	False	NA	NA	False	NA	NA	NA	98832319	98829314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830444_98830572_98830722_98830853_98831047_98832191
42199	chr5	-	1682	4	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.287183481998	100	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTTGTGCTTCATTTA	NA	False	NA	NA	False	NA	NA	NA	116560925	116546553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116546761_116546892_116547550_116553465_116553530_116560171
42200	chr6	+	1769	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	112	8	-21	-8	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	3	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTATGTGATGACTTT	NA	False	NA	NA	False	NA	NA	NA	51447621	51460676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
42201	chrX	+	2194	7	Antisense	novelGene_ENSMUSG00000031229.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACAAAGCAAGGCCTATG	NA	False	NA	NA	False	NA	NA	NA	104919742	104972912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_104921184_104921978_104922041_104923514_104923625_104931320_104931445_104932597_104932651_104934521_104934582_104972568
42202	chr8	+	1492	6	ISM	ENSMUSG00000031505.12	ENSMUST00000180269.2	749	7	31	-105	31	105	intron_retention	FALSE	canonical	3	77	junction_1	81.4729402930814	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGGTGAGTGAGGACTC	NA	False	NA	NA	False	NA	NA	NA	11547663	11560341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321
42203	chr9	+	2464	4	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-48	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	3.2659863237109	140	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTATGTGTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	75375849	75393963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_75375966_75388729_75388947_75390380_75390480_75391931
42206	chr11	+	1804	7	NIC	ENSMUSG00000020708.13	novel	1394	10	NA	NA	0	-10	intron_retention	FALSE	canonical	3	2411	junction_3	148.657791214887	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATGATAAACACTACAACT	4536	False	NA	NA	False	NA	NA	NA	106146979	106153936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106153135_106153229_106153518_106153622_106153710_106153834
42207	chr11	+	391	4	ISM	ENSMUSG00000020372.16	ENSMUST00000125166.2	637	6	791	-19	791	-1	3prime_fragment	FALSE	canonical	3	5433	junction_3	652.991577281055	243	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATATGTGAGTCCTGG	NA	False	NA	NA	False	NA	NA	NA	48694769	48696919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48694796_48694982_48695124_48696371_48696483_48696806
42208	chr7	+	2049	11	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	21	548	combination_of_known_junctions	FALSE	canonical	2	8	junction_2	93.4751838725124	477	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCATAGCCTCTGGCTGC	6846	False	NA	NA	False	NA	NA	NA	140711234	140736063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140711431_140715221_140715324_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
42209	chr10	-	1282	7	FSM	ENSMUSG00000019795.18	ENSMUST00000163085.8	1132	7	-29	-121	13	121	multi-exon	FALSE	canonical	3	667	junction_3	37.7491721763537	926	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGTCCCAGAGAGGTTGA	NA	False	NA	NA	False	NA	NA	NA	7539054	7513372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
42210	chr2	+	2571	8	NNC	ENSMUSG00000027287.15	novel	2723	8	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	133.653527099446	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTTATTCACAGACCAG	NA	False	NA	NA	False	NA	NA	NA	120398184	120431728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416694_120425328_120425438_120427123_120427269_120429756
42211	chr2	-	2430	3	Antisense	novelGene_ENSMUSG00000052368.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCTCTCTTCTCAAG	NA	False	NA	NA	False	NA	NA	NA	168863208	168848008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_168848074_168859866_168859990_168860966
42212	chr18	+	1948	11	Intergenic	novelGene_4522	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCGGAGATGGCCTGAAGG	1385	False	NA	NA	False	NA	NA	NA	34866045	34884559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_34866449_34866628_34866744_34867773_34867909_34868426_34868521_34871266_34871329_34873377_34873482_34880275_34880363_34880658_34880696_34881966_34882012_34882567_34882665_34883790
42216	chr15	-	1439	5	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2236.25282280426	19	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTTAAACAGTAGATGGT	377	False	NA	NA	False	NA	NA	NA	36609217	36595917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596302_36603144_36603230_36605685_36605802_36605987_36606182_36608557
42217	chr4	+	2933	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	219	7	219	-7	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCAAGGCACTGGTGCCT	NA	False	NA	NA	False	NA	NA	NA	105014762	105089954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
42218	chr8	-	2244	10	NNC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	23	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	261.615824265607	1	102	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGATCCCATGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	110419856	110397979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_110399274_110402007_110402057_110403385_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410312_110410411_110419815
42219	chr7	+	2308	5	NNC	ENSMUSG00000025485.14	novel	2272	8	NA	NA	336	-3	intron_retention	FALSE	canonical	0	0	junction_1	112.090365330835	5	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCTGTTTAACATTCAT	NA	False	NA	NA	False	NA	NA	NA	140438803	140443053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140438875_140439351_140439503_140440789_140440886_140440985_140441131_140441208
42220	chr11	-	375	2	FSM	ENSMUSG00000075528.14	ENSMUST00000125472.2	544	2	7	162	7	-162	multi-exon	FALSE	canonical	3	448	junction_1	0	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAAGACAGTACCTCCAA	NA	False	NA	NA	False	NA	NA	NA	101308225	101307735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101308061_101308175
42222	chr2	+	2953	21	FSM	ENSMUSG00000027303.19	ENSMUST00000028769.14	5325	21	255	2117	-11	-16	multi-exon	FALSE	canonical	3	182	junction_14	22.4438744427071	115	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGATTCCCTGAGGAAAT	148	False	NA	NA	False	NA	NA	NA	130292452	130395927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130292479_130345393_130345473_130345913_130346256_130359650_130359736_130360869_130360944_130361291_130361429_130374008_130374100_130375003_130375081_130377242_130377280_130379471_130379570_130381554_130381675_130382402_130382570_130383214_130383351_130384226_130384377_130385989_130386084_130386340_130386418_130386868_130387004_130391404_130391531_130391610_130391763_130394116_130394253_130395313
42223	chr19	-	1913	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_4	34.0258725090188	304	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGTGTTATGAACT	4140	False	NA	NA	False	NA	NA	NA	42074796	42063382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067100_42067216_42074635
42224	chr10	+	2388	12	NNC	ENSMUSG00000037846.19	novel	3970	12	NA	NA	-5	190	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	26.0155706713378	4	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAAACTCTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	67815539	67878318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_67815643_67823136_67823343_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871680_67871782_67875860_67875969_67877208
42225	chr6	-	2517	11	NNC	ENSMUSG00000029672.17	novel	1617	11	NA	NA	18	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	126.948060245125	15	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTTAACACTGACGTGTA	129	False	NA	NA	False	NA	NA	NA	22356054	22306532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_22306870_22307053_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355993
42227	chr4	-	1718	5	ISM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	11952	2	5244	-2	3prime_fragment	FALSE	canonical	3	359	junction_3	10.8253175473055	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	8109	False	NA	NA	False	NA	NA	NA	149239212	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622
42229	chr9	+	1290	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1451	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	6693.29342075533	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082125	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084750_64085106_64085300_64085504
42230	chr18	+	1975	15	NNC	ENSMUSG00000024271.9	novel	3466	22	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	297.024916497603	1	66	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	NA	False	NA	NA	NA	24737015	24771869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24737203_24745098_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752605_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
42231	chr9	+	1430	9	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	-3	6	intron_retention	FALSE	canonical	2	4	junction_6	347.229391037107	1380	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCATTTAAGCTCTTG	2366	False	NA	NA	False	NA	NA	NA	21323129	21331562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328694_21329579_21329719_21330549_21330845_21330920_21331009_21331331
42232	chr7	-	4041	8	Genic_Genomic	ENSMUSG00000108880.2	novel	3115	1	NA	NA	-17557	10274	multi-exon	TRUE	non_canonical	0	0	junction_1	0	79	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATCACATCTAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	58956471	58925525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_58926761_58934425_58934572_58935800_58936008_58936615_58936779_58938151_58938309_58938453_58938524_58953410_58953558_58954555
42233	chr19	+	3220	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	54	0	54	0	multi-exon	FALSE	canonical	3	204	junction_1	0	2	116	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCAGTGTTTCTATCTG	NA	False	NA	NA	False	NA	NA	NA	8870422	8875252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8870513_8872122
42234	chr5	+	2815	14	NIC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	2	-19	combination_of_known_splicesites	FALSE	canonical	2	8	junction_8	30.6120987799918	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATTTTTGAAGCCTTT	NA	False	NA	NA	False	NA	NA	NA	143846818	143868241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_143846898_143848738_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
42235	chr6	+	1506	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	263	6	263	-6	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	81	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGACATTTGCTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	145561745	145567199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
42236	chr7	-	2358	13	NNC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	8	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	93.863486866122	2	45	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTTTAAATTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	105401434	105395140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398633_105398814_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
42237	chr1	+	2512	8	Antisense	novelGene_ENSMUSG00000026694.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAACCTAGAAACCATATC	NA	False	NA	NA	False	NA	NA	NA	162361239	162376090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162362119_162363409_162363545_162364684_162364903_162366402_162366569_162369826_162370021_162371752_162371955_162373796_162374095_162375670
42238	chr8	-	1838	2	Antisense	novelGene_ENSMUSG00000059897.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATATTACCAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	69682271	69679320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69679380_69680492
42239	chr11	+	1043	2	Antisense	novelGene_ENSMUSG00000005198.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGCGTGGCTCATAGGCT	1959	False	NA	NA	False	NA	NA	NA	69624031	69626335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69624040_69625300
42240	chr19	-	2036	5	NNC	ENSMUSG00000024668.9	novel	2025	5	NA	NA	-26	-19	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	100.446503174575	444	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGACGAAAGCTGGAAT	NA	False	NA	NA	False	NA	NA	NA	10502572	10479023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498401_10502422
42241	chr5	-	1870	4	NNC	ENSMUSG00000037221.14	novel	1318	5	NA	NA	1903	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	129.636243217534	73	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9861	False	NA	NA	False	NA	NA	NA	137597050	137594906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595925_137596039
42242	chr7	-	1966	5	ISM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	2394	12	1842	-12	3prime_fragment	FALSE	canonical	3	2173	junction_1	172.914718864532	1	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTGTCTCACTTTCTT	NA	False	NA	NA	False	NA	NA	NA	117726491	117718125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356
42243	chr17	-	2915	22	NIC	ENSMUSG00000001229.10	novel	3374	21	NA	NA	33	-545	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	37.462241005228	1	47	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGACTCCTGACGCCACCG	NA	False	NA	NA	False	NA	NA	NA	56525856	56494361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56494462_56495267_56495380_56496322_56496466_56496761_56496881_56496989_56497143_56497684_56497832_56498013_56498160_56501415_56501552_56501907_56502061_56503087_56503168_56505971_56506135_56506255_56506434_56507582_56507684_56509840_56509903_56511171_56511301_56512193_56512308_56512452_56512622_56512696_56512871_56513776_56513890_56518579_56518834_56524408_56524462_56525740
42244	chr2	+	1587	11	NNC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	0	-71	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3409.59919052079	1	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTAGTTCAGTTTT	7475	False	NA	NA	False	NA	NA	NA	75489604	75496112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491937_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
42245	chr7	+	1856	8	NIC	ENSMUSG00000073838.11	novel	1754	9	NA	NA	0	-5	intron_retention	FALSE	canonical	3	611	junction_6	25.6053247013434	68	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACTCAGCTTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126086549	126089894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126089084_126089492
42246	chr17	-	3653	18	NNC	ENSMUSG00000007670.11	novel	3978	18	NA	NA	307	-20	intron_retention	FALSE	canonical	0	0	junction_10	169.028406121943	624	27	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATGGTATCAAAAACC	NA	False	NA	NA	False	NA	NA	NA	57338181	57328070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57329971_57330058_57330137_57330212_57330414_57330504_57330594_57330826_57330937_57331010_57331172_57331246_57331493_57331788_57331892_57331979_57332079_57332307_57332407_57332493_57332671_57332879_57332938_57333842_57333915_57334048_57334099_57334816_57334857_57334955_57334995_57336041_57336139_57338147
42247	chr17	-	328	3	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	849	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5465	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATTAAAAGTATGCAAAA	NA	False	NA	0	True	NA	NA	NA	45879813	45878742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878885_45879332_45879489_45879783
42248	chr11	+	1924	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	26	0	7	0	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	1108	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68936503	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
42249	chr1	+	1826	6	FSM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	-6	3	-6	-3	multi-exon	FALSE	canonical	3	392	junction_1	35.0884596413123	841	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCTGCTTTCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	135656878	135679967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
42250	chr8	+	892	1	ISM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	19191	2622	19032	-2622	mono-exon	FALSE	NA	NA	NA	NA	NA	28	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCCTCCCCTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	72934234	72935126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_72934200_72935100
42251	chr2	+	2389	13	NIC	ENSMUSG00000027255.15	novel	3068	16	NA	NA	14	-24	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	70.0885848210835	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCAAGGGGCCCTGTGG	5835	False	NA	NA	False	NA	NA	NA	91095651	91107252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
42252	chr10	-	3811	21	Antisense	novelGene_ENSMUSG00000069601.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	79	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTCAGACCGAAACAT	NA	False	NA	NA	False	NA	NA	NA	69860503	69761759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_69762020_69763518_69763647_69768221_69768327_69786780_69786888_69789268_69789303_69791753_69791978_69794744_69794901_69809549_69809767_69811878_69812083_69813539_69813637_69814297_69814528_69815145_69815272_69816099_69816223_69817943_69817992_69830201_69830275_69833922_69834057_69835184_69835328_69838339_69838430_69840437_69840820_69851395_69851481_69859658
42253	chr6	+	3042	23	NNC	ENSMUSG00000030088.16	novel	653	5	NA	NA	-2607	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	47.2324128797829	1	128	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTTTGTGTCACTGCT	NA	False	NA	NA	False	NA	NA	NA	90525163	90576148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90525250_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
42254	chr2	+	3903	4	NIC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-15	132	intron_retention	FALSE	canonical	3	240	junction_1	24.4449494897321	11	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACCCCAACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	25390855	25395089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_25393058_25393136_25393286_25393448_25394340_25394428
42255	chr4	-	1488	3	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	38	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	492	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTCGGTTCTTCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	127222916	127219030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219605_127219698_127220565_127222868
42256	chr5	+	2093	12	Fusion	ENSMUSG00000063646.19_ENSMUSG00000113373.2	novel	516	2	NA	NA	2843	-2	multi-exon	FALSE	canonical	3	13	junction_1	47.5912346954217	275	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCCTTTTTTATTTG	3224	False	NA	NA	False	NA	NA	NA	37245556	37282641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_37245651_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
42257	chr7	-	3003	6	NNC	ENSMUSG00000078630.9	novel	2796	4	NA	NA	1937	1940	intron_retention	FALSE	non_canonical	0	0	junction_1	0	16	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCGACCCGGAAGCGTTT	9809	False	NA	NA	False	NA	NA	NA	101551055	101545636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101545656_101546937_101547020_101547143_101547277_101547758_101547818_101548103_101548276_101548517
42258	chr3	-	1071	7	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	115	-43	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	86.6033422501054	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAACACACTTGAAACACAA	NA	False	NA	NA	False	NA	NA	NA	107876484	107871054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876420
42259	chr13	-	3928	21	ISM	ENSMUSG00000021557.16	ENSMUST00000022040.14	8174	26	26141	3802	2020	-7	3prime_fragment	FALSE	canonical	3	10	junction_8	6.79411510058521	40	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTGCATTTCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	59678984	59597357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59630330_59630419_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870
42260	chr12	-	2433	13	NNC	ENSMUSG00000020986.14	novel	2529	18	NA	NA	-9479	-460	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	181.424839044223	1	79	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAATTGAACTGTGCTAG	7155	False	NA	NA	False	NA	NA	NA	59038969	59005628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_59006766_59013749_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910
42261	chr14	+	2050	10	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	650.133794397187	2	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAAAATGTGTGAGTGT	8887	False	NA	NA	False	NA	NA	NA	55777718	55786298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782051_55782359_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785932
42262	chr11	-	2196	8	NIC	ENSMUSG00000018537.17	novel	2347	10	NA	NA	-1163	325	intron_retention	FALSE	canonical	3	189	junction_5	16.9945969805292	27	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCTTTCACAAATGCAGT	NA	False	NA	NA	False	NA	NA	NA	97584398	97580292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241
42264	chr2	+	4564	17	FSM	ENSMUSG00000026979.17	ENSMUST00000056641.15	4748	17	-9	193	-9	-193	multi-exon	FALSE	canonical	2	7	junction_1	5.02338282435253	35	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTGCAATAAATAGAACCT	NA	False	NA	NA	False	NA	NA	NA	24275334	24298548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_24275475_24284033_24285053_24286316_24286446_24286688_24286798_24287222_24287578_24290432_24290613_24291025_24291107_24291232_24291346_24291535_24291595_24291743_24291834_24292882_24292927_24293211_24293373_24294393_24294465_24294748_24294913_24295318_24295464_24295698_24295843_24296988
42265	chr4	+	1366	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174819.8	652	4	-16	-698	-1	2	multi-exon	FALSE	canonical	3	97	junction_2	255.064697674923	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGCTTAGCAAATGTTT	3175	False	NA	NA	False	NA	NA	NA	129494471	129502316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129494525_129494775_129494928_129500879_129500973_129501248
42267	chr5	-	1838	15	NNC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-6	-167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	185.531847202928	1290	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTTTTTAGTGTGGTT	8872	False	NA	NA	False	NA	NA	NA	110801252	110796450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798274_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
42268	chr7	+	2171	15	NIC	ENSMUSG00000002963.18	novel	2184	16	NA	NA	2	-71	intron_retention	FALSE	canonical	3	182	junction_8	25.480284495256	16	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAACTAGCCTGATGAGC	9520	False	NA	NA	False	NA	NA	NA	44506767	44512345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44506979_44507586_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
42269	chr1	+	453	1	Antisense	novelGene_ENSMUSG00000026466.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATGGACCACCACTCCC	NA	False	NA	NA	False	NA	NA	NA	155880449	155880902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_155880400_155880900
42270	chr17	+	2064	4	NIC	ENSMUSG00000024038.18	novel	1582	4	NA	NA	-14	-3	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	1724.13688551692	58	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTCACTATGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	31739109	31750297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_31739236_31740542_31740667_31745775_31747376_31750083
42271	chr14	-	2407	18	NNC	ENSMUSG00000021948.18	novel	2777	18	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	28.9716482338179	4	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATAATAGGCTGTATATA	5421	False	NA	NA	False	NA	NA	NA	30348167	30317547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30348069
42272	chr14	+	1507	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	0	3236	0	824	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	2	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAAAGAACGAACACTTC	NA	False	NA	NA	False	NA	NA	NA	63359910	63380136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
42273	chr2	+	3881	22	FSM	ENSMUSG00000027478.16	ENSMUST00000088976.12	4130	22	249	0	86	0	multi-exon	FALSE	canonical	3	28	junction_1	27.8880983888474	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGTGTGTTTTTTATC	NA	False	NA	NA	False	NA	NA	NA	153491622	153529650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
42275	chr10	-	1677	5	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	159	-44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	339.359230757025	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATACACATAATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	5755441	5749203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752436_5755221
42276	chr17	-	2110	9	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	-10	-1490	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.024037072642	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAAGTGGATGGTGTATA	NA	False	NA	NA	False	NA	NA	NA	56597521	56585965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56586552_56586606_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
42277	chr15	-	3359	1	Genic_Genomic	ENSMUSG00000044636.7	novel	NA	NA	NA	NA	15889	3329	mono-exon	FALSE	NA	NA	NA	NA	NA	4	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACCCCAAAAACCAAAAACC	NA	False	NA	-28	True	NA	NA	NA	100377480	100374121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_100374100_100377500
42278	chrX	+	2843	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	75	1312	75	-1312	multi-exon	FALSE	canonical	3	360	junction_3	33.4381425171914	1	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTAGGTTCCAAAGTTGAA	NA	False	NA	NA	False	NA	NA	NA	36390522	36413087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
42279	chr11	+	3320	11	NNC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	102	-22	intron_retention	FALSE	canonical	3	6	junction_4	22.7473075329807	4	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTCTTCCTGGGATG	NA	False	NA	NA	False	NA	NA	NA	75239422	75296509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278316_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
42280	chr19	-	2882	6	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-9	1	intron_retention	FALSE	canonical	3	822	junction_5	60.9163360684144	11	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTGGAAAAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	41921746	41912003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41912528_41913149_41913679_41914970_41916553_41919794_41919870_41921487_41921604_41921690
42281	chr9	-	3311	2	NNC	ENSMUSG00000062794.9	novel	3574	5	NA	NA	10128	3254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGCTTGCATCAGAGTT	NA	False	NA	NA	False	NA	NA	NA	22161063	22155471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_22157861_22160141
42282	chr17	-	1931	20	Antisense	novelGene_ENSMUSG00000007036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	153	6	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCCTCAGGTCCCCGCCG	NA	False	NA	NA	False	NA	NA	NA	35321957	35308276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35308432_35309343_35309399_35309994_35310063_35310544_35310632_35313224_35313311_35315277_35315353_35315456_35315579_35317667_35317783_35317872_35317974_35319307_35319373_35319612_35319664_35319936_35320059_35320213_35320318_35320512_35320580_35320801_35320861_35320945_35321014_35321125_35321197_35321271_35321372_35321449_35321495_35321642
42283	chr9	+	1836	9	NNC	ENSMUSG00000032336.18	novel	2024	8	NA	NA	-28	0	intron_retention	FALSE	non_canonical	0	0	junction_8	126.778103393291	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	591	False	NA	NA	False	NA	NA	NA	58489628	58560161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141_58559848_58559981
42284	chrX	+	1946	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	80	-7	2	7	multi-exon	FALSE	canonical	3	265	junction_1	0	479	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACAAGTGTGTGTTGCT	1559	False	NA	NA	False	NA	NA	NA	10583708	10585936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_10583944_10584225
42285	chr5	-	3352	27	ISM	ENSMUSG00000029086.16	ENSMUST00000074113.13	3966	28	7486	7	245	-2	3prime_fragment	FALSE	canonical	2	5	junction_24	9.49719672125044	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGCTTTTGGTGTTTGG	NA	False	NA	NA	False	NA	NA	NA	44251810	44150968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44215967_44215995_44220467_44220527_44251736
42286	chr6	-	1844	7	ISM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	103	407	13	-4	5prime_fragment	FALSE	canonical	3	1332	junction_6	190.502333027417	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCCAGGAACTGGGCC	NA	False	NA	NA	False	NA	NA	NA	124942398	124935782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
42289	chrX	-	3413	11	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	5	-544	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.7834036883752	1	118	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAATGTCTTATGTCCCTG	NA	False	NA	NA	False	NA	NA	NA	156381670	156331363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333176_156333818_156334147_156335911_156335988_156337885_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
42290	chr17	+	3534	1	NIC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	528	-55	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAAGCCCTCCCTACAGCA	3564	False	NA	NA	False	NA	NA	NA	35817442	35820976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35817400_35821000
42291	chr5	+	3328	13	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	47217	6	47210	-6	3prime_fragment	FALSE	canonical	3	14	junction_1	14.247806848775	88	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTAACTAGAGTCTTGAGC	NA	False	NA	NA	False	NA	NA	NA	129221030	129281657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129221173_129239658_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
42292	chr4	-	2612	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	54	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	236.476743042524	1	170	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726899	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147703015_147725368_147725463_147726761
42293	chr15	-	1575	14	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	11	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	988.414940535885	2	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	2674	False	NA	NA	False	NA	NA	NA	43146104	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43131456_43131532_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
42295	chrX	+	1918	1	NIC	ENSMUSG00000031231.5	novel	1001	3	NA	NA	635	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	22	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTTAACCTTCATTCTA	NA	False	NA	NA	False	NA	NA	NA	105063631	105065549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_105063600_105065500
42296	chr15	+	1094	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	0	643	0	-643	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAGATTTGTGAACTCAG	NA	False	NA	NA	False	NA	NA	NA	103148880	103152739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
42297	chr15	+	624	5	ISM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	7	369	7	-369	5prime_fragment	FALSE	canonical	3	5295	junction_1	2513.91123301918	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGTGTGCGGGGTGTGGCC	NA	False	NA	NA	False	NA	NA	NA	76788284	76790145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055
42300	chr9	+	1911	9	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	63.057389535248	2	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174057	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178411_108178678
42302	chr13	-	1247	1	Antisense	novelGene_ENSMUSG00000021361.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCGTCCTAGCGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	41171006	41169759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_41169800_41171000
42303	chr17	-	2274	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	41	5	41	-1	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	1	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGCAGCCTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	34250553	34247247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
42304	chr15	-	2197	11	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	86	0	intron_retention	FALSE	canonical	3	23	junction_10	105.439840667558	378	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9502	False	NA	NA	False	NA	NA	NA	98729249	98710677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98728767
42305	chr4	-	2184	1	Antisense	novelGene_ENSMUSG00000085101.8_AS_novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	140	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGATTTCCTGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145178228	145176044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145176000_145178200
42306	chr11	-	2372	12	NIC	ENSMUSG00000018669.15	novel	2250	14	NA	NA	-6	0	intron_retention	FALSE	canonical	3	18	junction_10	317.457643429641	1	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGGCTGGCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	96807246	96798641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806876_96807023_96807209
42307	chr7	+	2863	13	NIC	ENSMUSG00000030589.16	novel	2296	17	NA	NA	2562	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	16.1081414887697	53	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCGCACTGACTGCCAGT	415	False	NA	NA	False	NA	NA	NA	28837059	28851038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28849482_28849603_28849717_28850870
42309	chr11	+	2049	15	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	58.4743533525596	369	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	NA	False	NA	NA	NA	51153966	51172591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51161363_51161423_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
42310	chr8	-	2634	12	NNC	ENSMUSG00000038000.11	novel	2722	12	NA	NA	-2	1	intron_retention	TRUE	canonical	0	0	junction_1	61.6682674202184	75	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGTTTCTCCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	106427736	106422490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106422611_106423710_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
42311	chr1	+	3499	7	NNC	ENSMUSG00000026039.10	novel	4939	9	NA	NA	46	-7992	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.2489183035441	1	86	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGGTGATGCCGCTCATG	5185	False	NA	NA	False	NA	NA	NA	58035175	58057065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58035413_58037242_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517
42312	chr3	+	2074	6	NIC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	13	-16	intron_retention	FALSE	canonical	3	4254	junction_2	529.439930492591	2	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCATGATCAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	121220206	121251580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245649_121248595_121248743_121250730
42313	chr19	-	4141	3	Antisense	novelGene_ENSMUSG00000080626.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	477	27	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTCTCCCCCTGCCAGT	NA	False	NA	NA	False	NA	NA	NA	23145493	23118492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_23118619_23119055_23119622_23142044
42314	chr7	-	3217	6	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	-5	-158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.4072151531331	43	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGTCCAAAGAAAATGGAA	3418	False	NA	NA	False	NA	NA	NA	29553099	29542832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29543082_29543253_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552850
42315	chr4	-	2793	15	FSM	ENSMUSG00000028677.20	ENSMUST00000030439.15	3029	15	235	1	132	0	multi-exon	FALSE	canonical	0	0	junction_5	470.113273367088	30	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	117354014	117128660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117346785_117347528_117353879
42316	chr9	+	2573	1	NIC	ENSMUSG00000039285.13	novel	3396	8	NA	NA	1936	-275	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTTAAAATGGAATTGG	NA	False	NA	NA	False	NA	NA	NA	117890059	117892632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_117890100_117892600
42317	chr1	-	2217	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	-51	5	-34	-5	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	336	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATGGTGTTGTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	165462141	165419813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
42319	chr2	+	2297	14	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	4	-7	intron_retention	FALSE	canonical	3	511	junction_7	48.5259645011743	694	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCCAGATATTTTACTC	NA	False	NA	NA	False	NA	NA	NA	174257647	174269288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268423_174268609_174268740_174268823
42320	chr11	-	1774	13	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	-3550	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	270.070978324835	1	50	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	35719510	35699207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712074_35715243_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451
42321	chr13	-	883	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	1299	0	414	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAACATGGTGCCATTCCC	NA	False	NA	NA	False	NA	NA	NA	34314337	34312029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
42322	chr8	+	1217	1	Intergenic	novelGene_1660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGACAGAAATTGTGGAG	NA	False	NA	NA	False	NA	NA	NA	71127802	71129019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_71127800_71129000
42323	chr1	-	2948	13	NNC	ENSMUSG00000026608.14	novel	3706	18	NA	NA	1243	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.580606859267	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAGCAGTGTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	188728670	188703297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_188703463_188703522_188704881_188706262_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596
42324	chr11	-	1991	12	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	84	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	341.772143901617	2	86	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCTGCTTACTCGGTGGG	NA	False	NA	NA	False	NA	NA	NA	60702007	60679722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692243_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
42325	chr14	-	2821	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	75	17	-11	-17	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	1	147	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTTTTACTAGCATTT	6419	False	NA	NA	False	NA	NA	NA	66071368	66056503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
42326	chr1	-	4800	8	ISM	ENSMUSG00000053024.15	ENSMUST00000188065.7	4287	13	2161	2393	-2075	-28	internal_fragment	FALSE	canonical	2	6	junction_3	2.91372543633873	15	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAAAGATGTGTTCTGA	NA	False	NA	NA	False	NA	NA	NA	132448970	132439557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_132443376_132443758_132443928_132444261_132444375_132444638_132444826_132446034_132446148_132446399_132446635_132446906_132446978_132448876
42327	chr14	+	1417	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	54	3272	2	788	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCCGAGGACCCAAGGG	NA	False	NA	NA	False	NA	NA	NA	63359964	63380100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
42328	chr12	+	1069	12	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	1509.62149489574	1251	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGGTAATTGAAGCTAT	4765	False	NA	NA	False	NA	NA	NA	71021439	71041281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71021542_71025506_71025590_71025674_71025783_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
42329	chr12	-	2045	14	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	3549	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	273.490369571802	1	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87515490	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497154_87497265_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379
42330	chr4	-	2462	16	Antisense	novelGene_ENSMUSG00000065778.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	38	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTTTTTCTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	123192621	123176657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_123176842_123177398_123177599_123180470_123180665_123182749_123182868_123183991_123184131_123184662_123184757_123185523_123185660_123186652_123186751_123188362_123188636_123188783_123188872_123188992_123189114_123189541_123189627_123189719_123189849_123191469_123191565_123191652_123191843_123192303
42332	chr8	-	1777	6	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	1780.64691615154	2	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43759998	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749173_43749261_43749574_43753664_43753743_43755911_43756021_43757512_43757597_43759877
42334	chrX	+	2089	14	NNC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	-8	4492	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_13	93.3887339099411	18	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGCCACTAAAAACATGGA	NA	False	NA	NA	False	NA	NA	NA	70258625	70346959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70346408
42335	chr2	-	2659	1	Genic_Genomic	ENSMUSG00000015335.17	novel	NA	NA	NA	NA	15	1	mono-exon	FALSE	NA	NA	NA	NA	NA	22	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCGTGGACTCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	29983613	29980954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_29981000_29983600
42337	chr18	-	2150	10	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	24	-1347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	356.629731559357	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTCAAAGATGATTTT	NA	False	NA	NA	False	NA	NA	NA	35065036	35037184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047210_35064951
42338	chr7	+	2504	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	8	254	8	205	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	272	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAATTGGTCCCAAACCG	1484	False	NA	NA	False	NA	NA	NA	126461151	126464295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
42339	chr15	+	1121	2	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98464	-144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	181	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATAGTGCTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	98829307	98935847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98829987_98935405
42340	chr7	-	2559	10	FSM	ENSMUSG00000019082.19	ENSMUST00000019226.14	2811	10	247	5	-7	0	multi-exon	FALSE	canonical	3	72	junction_9	20.9708792800344	262	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	2	True	NA	NA	False	NA	NA	NA	141017558	141009661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
42341	chr5	-	4101	4	ISM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	45900	-4	16477	4	3prime_fragment	FALSE	canonical	3	50	junction_3	4.96655480858378	61	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTTACCTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	21110920	21098021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_21101703_21101790_21101900_21107285_21107454_21110777
42342	chr5	+	4971	35	NIC	ENSMUSG00000039765.16	novel	4512	34	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_9	5.72140097054418	38	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTAGTCTGTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	43829636	43898314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_43829747_43831033_43831158_43838630_43838720_43839040_43839146_43840441_43840544_43841381_43841556_43842599_43842763_43845465_43845603_43846259_43846392_43852426_43852637_43853867_43853975_43857280_43857422_43860532_43860690_43861202_43861445_43863398_43863577_43864084_43864242_43866385_43866534_43867846_43867986_43869581_43869786_43871850_43871944_43873095_43873188_43875894_43876063_43877682_43877789_43879730_43879841_43881042_43881140_43881615_43881715_43883537_43883715_43887198_43887403_43889719_43889810_43891169_43891284_43892657_43892793_43893375_43893499_43894837_43894897_43896639_43896818_43898007
42343	chr7	+	2657	19	NIC	ENSMUSG00000030924.17	novel	2492	20	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_12	9.76703955804394	65	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTCCTCTTAGATGT	NA	False	NA	NA	False	NA	NA	NA	119393352	119448166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_119393726_119398787_119398901_119400452_119400580_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525_119426600_119427314_119427430_119431893_119431999_119433486_119433625_119442464_119442558_119443070_119443288_119443481_119443670_119444605_119444725_119447954
42344	chr7	-	2033	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	47	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	621.456675883364	1	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGGTGTGTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	99002399	98994639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995498_98995588_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
42345	chr12	-	917	2	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	3875	6	766	-6	3prime_fragment	FALSE	canonical	3	16426	junction_1	0	6	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTGTGGAATGTGTC	NA	False	NA	NA	False	NA	NA	NA	110658848	110657467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110658084_110658547
42347	chr7	-	4697	12	FSM	ENSMUSG00000030850.18	ENSMUST00000033139.15	4735	12	38	0	-12	0	multi-exon	FALSE	canonical	3	115	junction_5	49.9651117950737	3	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCGGCCGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	130121272	129993222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
42348	chr1	+	1858	8	NIC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	74.0904025842892	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097915	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171097985_171098772_171098944_171099397_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
42350	chr8	-	1184	4	NIC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	16	-163	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	974.020647739165	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATTGTGATTTTTATT	NA	False	NA	NA	False	NA	NA	NA	117720260	117708711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_117709466_117710546_117710679_117714051_117714116_117720026
42353	chr2	+	195	1	Antisense	novelGene_ENSMUSG00002075987.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATCGCCCTCACGCCAG	NA	False	NA	NA	False	NA	NA	NA	7081011	7081206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_7081000_7081200
42354	chr9	+	3449	12	NNC	ENSMUSG00000074259.11	novel	3705	12	NA	NA	235	-2	intron_retention	TRUE	non_canonical	0	0	junction_10	14.518156201947	1	81	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGGTGTAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	59615281	59626155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621557_59623205_59623311_59623490_59625202_59625481_59625714_59625801
42355	chr9	-	1527	9	NNC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	18	1520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.831051237375	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCCGCTGGTTCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	21061260	21050728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21051122_21051181_21051260_21052053_21052132_21052289_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
42356	chr16	+	3839	5	ISM	ENSMUSG00000053414.9	ENSMUST00000231719.2	3068	11	75353	-1671	14000	-24	3prime_fragment	FALSE	canonical	3	109	junction_1	10.1365674663566	62	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAATACACTTTTTCCTC	NA	False	NA	NA	False	NA	NA	NA	90272784	90296417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_90272871_90278137_90278222_90284746_90284795_90290300_90290482_90292977
42357	chr13	+	3167	17	NIC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	-10	-17	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	37.006703362364	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTATTTAATTTCATCT	5528	False	NA	NA	False	NA	NA	NA	51805766	51838063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_51805857_51806642_51806792_51808531_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
42358	chr2	+	3538	10	FSM	ENSMUSG00000060227.16	ENSMUST00000078752.10	4215	10	349	328	189	-15	multi-exon	TRUE	canonical	3	136	junction_8	32.2490309931942	16	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGTTAAACTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	121697799	121766373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121698013_121729278_121729334_121731662_121731766_121733542_121733634_121736410_121736553_121737178_121737260_121741279_121741379_121742351_121742523_121756041_121756210_121763958
42359	chr10	+	4237	7	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	1	-15	intron_retention	TRUE	canonical	0	0	junction_2	294.692872137907	42	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTCTTTCTGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	80438758	80451602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80438784_80442147_80444689_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
42360	chr7	+	1905	6	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	55.9692772867401	39	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	620	False	NA	NA	False	NA	NA	NA	101872260	101887771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
42361	chr7	+	3250	15	NNC	ENSMUSG00000030852.19	novel	2934	13	NA	NA	2865	-5	intron_retention	TRUE	canonical	2	7	junction_1	81.8501929236129	1	146	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATGCATGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	130318271	130366449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130318346_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
42362	chr10	+	3309	16	Antisense	novelGene_ENSMUSG00000037012.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	154	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCCTCCTCCCTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	62104890	62175950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62105756_62107492_62107604_62110227_62110386_62111467_62111644_62116814_62116909_62117585_62117696_62121996_62122430_62125936_62126172_62128091_62128246_62131479_62131665_62131773_62131874_62132454_62132551_62134927_62135049_62140498_62140648_62151163_62151329_62175793
42363	chr12	+	3329	2	NNC	ENSMUSG00000033454.7	novel	12190	2	NA	NA	874	-8501	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	82	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATCTGGTTGTTCTAT	294	False	NA	NA	False	NA	NA	NA	76417913	76435223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76418019_76431999
42364	chr7	+	2245	8	NNC	ENSMUSG00000030990.19	novel	2141	7	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	71.7435910527404	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTGAGGTAGGTATGT	NA	False	NA	NA	False	NA	NA	NA	101859738	101887768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101859799_101870089_101870343_101872570_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
42365	chr7	-	3100	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	340	1942	26	-374	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	2	147	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCACCTTTCTCTAAGAAT	NA	False	NA	NA	False	NA	NA	NA	118454881	118443386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
42367	chr8	+	1434	10	NNC	ENSMUSG00000005481.19	novel	1656	11	NA	NA	-35	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	751.613983536039	2	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTTTATTGTGAATGC	NA	False	NA	NA	False	NA	NA	NA	84441861	84449889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84441967_84446015_84446285_84447184_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
42369	chr17	-	1913	5	FSM	ENSMUSG00000024150.13	ENSMUST00000129616.8	813	5	30	-1130	13	0	multi-exon	FALSE	canonical	2	8	junction_4	139.054620563288	106	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	NA	False	NA	NA	NA	87573278	87562085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573219
42370	chr9	-	2242	4	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1817	1	1817	-1	3prime_fragment	FALSE	canonical	3	97	junction_3	15.9652400197707	182	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTGTGTCTGTCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	20789206	20785104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687
42371	chr11	-	1971	14	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.06587742004239	1	69	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCACCAGCGCGTCCCGC	NA	False	NA	NA	False	NA	NA	NA	80293798	80274183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274319_80276725_80276863_80278641_80278765_80279803_80279970_80280078_80280153_80280597_80280643_80282151_80282225_80282657_80282811_80285104_80285355_80285924_80286091_80286215_80286397_80286614_80286700_80289239_80289292_80293467
42372	chr19	-	1322	9	ISM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	-1	0	-1	0	intron_retention	FALSE	canonical	3	415	junction_8	247.19526694498	1570	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5857	False	NA	NA	False	NA	NA	NA	46327064	46318982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751
42373	chr11	+	1595	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	0	31	0	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	2	82	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120655200
42374	chr19	+	1275	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	158	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3893.13469255496	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	1001	False	NA	NA	False	NA	NA	NA	8944562	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946731_8946871_8947207_8947352_8950267_8950473_8954681_8954855_8954948_8955074_8955307
42376	chr2	+	1687	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	224	0	224	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143757463	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
42377	chr1	-	2566	5	NIC	ENSMUSG00000026095.16	novel	2442	6	NA	NA	-86	-5	intron_retention	FALSE	canonical	3	502	junction_1	48.7410248148313	62	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTACTGTGGGGTGTAG	NA	False	NA	NA	False	NA	NA	NA	53391815	53383808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_53384139_53385738_53387718_53389145_53389222_53390038_53390093_53391688
42378	chr10	-	2137	9	FSM	ENSMUSG00000020069.17	ENSMUST00000140743.8	1633	9	274	-778	-49	14	multi-exon	FALSE	canonical	3	177	junction_7	118.49762655851	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATGTTGTGTTAGTTAT	5732	False	NA	NA	False	NA	NA	NA	62859722	62850428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859498
42379	chr9	+	3872	19	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	23	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	107.963885708527	1	230	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGGGCCAACTCCAACT	NA	False	NA	NA	False	NA	NA	NA	109760890	109911166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893522_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908965_109910494_109910679_109910802
42380	chr11	-	1991	12	NNC	ENSMUSG00000035086.14	novel	4365	12	NA	NA	10	-8	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_8	132.301621336492	397	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATTACCAAGTGGTACG	NA	False	NA	NA	False	NA	NA	NA	101193102	101179095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186405_101187083_101187143_101189834_101189903_101192553_101192683_101192957
42381	chr3	+	1574	4	ISM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	970	175	755	-175	3prime_fragment	FALSE	canonical	3	1297	junction_1	245.092272873345	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTCTGGTGAAGTAACT	NA	False	NA	NA	False	NA	NA	NA	96080617	96084705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96081400_96081638_96081846_96083950_96084125_96084294
42383	chr7	-	2422	3	NIC	ENSMUSG00000030615.13	novel	799	5	NA	NA	2	2	intron_retention	FALSE	canonical	3	739	junction_2	40	17	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATCTTGTCTGCAACAT	1668	False	NA	NA	False	NA	NA	NA	90106414	90099917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_90102109_90104631_90104728_90106279
42384	chr17	+	2387	2	Intergenic	novelGene_62	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGATCCCCACCCCAACTA	NA	False	NA	NA	False	NA	NA	NA	17724949	17727711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17725604_17725978
42385	chr6	+	2791	4	NIC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	44	intron_retention	FALSE	canonical	0	0	junction_2	238.685287914163	6	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGTGTTGTTAAGTCAA	NA	False	NA	NA	False	NA	NA	NA	72575584	72584469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72575780_72577955_72578139_72581848_72584017_72584224
42386	chr18	-	2845	11	NNC	ENSMUSG00000037013.18	novel	3098	11	NA	NA	25	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	354.09181012839	1	150	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGCTATTTAAAACTGTA	NA	False	NA	NA	False	NA	NA	NA	14815788	14758743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14760363_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
42389	chr7	+	2617	7	ISM	ENSMUSG00000030539.14	ENSMUST00000205822.2	3760	14	20523	28	20428	-28	3prime_fragment	FALSE	canonical	3	56	junction_5	14.9740516301441	6	78	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGACAAATTATAGTTATT	9490	False	NA	NA	False	NA	NA	NA	79868711	79876131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343
42390	chr2	-	1665	1	ISM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	211334	1	10463	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	104	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTCCTGTCGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	60582202	60580537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_60580500_60582200
42391	chr12	+	1523	15	NNC	ENSMUSG00000021115.16	novel	1742	15	NA	NA	-9	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	370.266644129743	1	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTTGTGTACTTTACT	NA	False	NA	NA	False	NA	NA	NA	105976532	106041441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976618_106002798_106002964_106009095_106009126_106017201_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
42392	chr11	-	1707	10	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	77.5972508104078	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	223	False	NA	NA	False	NA	NA	NA	61652907	61620479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61652779
42393	chr14	-	2353	15	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	2	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	345.641941958461	1	108	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAACAAATAAAGTGAAGTT	4861	False	NA	NA	False	NA	NA	NA	54754816	54744679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748809_54748859_54748953_54749037_54749449_54749612_54750747_54750912_54752199_54752375_54752783_54752895_54753562_54753649_54754703
42396	chr6	+	2184	15	FSM	ENSMUSG00000029913.15	ENSMUST00000031976.14	2155	15	-30	1	-30	-1	multi-exon	FALSE	canonical	3	106	junction_5	23.473389188611	257	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACGGCTCTTGACTTTCT	NA	False	NA	NA	False	NA	NA	NA	65755941	65913359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
42398	chr10	-	2858	9	Antisense	novelGene_ENSMUSG00000019823.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTGCGCCCATTCAC	NA	False	NA	NA	False	NA	NA	NA	41361065	41355690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_41355768_41356277_41356380_41357127_41358284_41358597_41359623_41359709_41359797_41360158_41360249_41360369_41360528_41360727_41360802_41360976
42399	chr1	+	1814	10	NIC	ENSMUSG00000026641.14	novel	1115	10	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	69.9292411329631	535	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTCTGTCTTCCTCCTT	6739	False	NA	NA	False	NA	NA	NA	171238882	171246326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171239009_171241940_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
42400	chr2	+	1916	10	NNC	ENSMUSG00000038685.19	novel	4322	34	NA	NA	-507	-11	intron_retention	FALSE	non_canonical	0	0	junction_4	105.924617966543	1	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTATCAGGATGGTGTC	8316	False	NA	NA	False	NA	NA	NA	180993367	180998396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180993493_180993595_180993747_180993833_180993974_180994545_180994630_180995826_180995969_180996145_180996236_180996801_180996919_180997120_180997346_180997443_180997606_180997716
42401	chr6	-	1761	12	NNC	ENSMUSG00000029782.21	novel	2273	15	NA	NA	901	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	384.408228255345	3	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCATCTTGAAAGGTC	945	False	NA	-49	True	NA	NA	NA	30508802	30482415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30502013_30502102_30505731_30505913_30506798_30506917_30508452_30508512_30508664
42402	chr3	+	3856	5	FSM	ENSMUSG00000027955.17	ENSMUST00000118853.8	6729	5	-29	2902	-29	-2900	multi-exon	FALSE	canonical	0	0	junction_1	2.77263412660235	33	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATACTTCTCATCTCCT	NA	False	NA	NA	False	NA	NA	NA	79791810	79850685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_79791998_79793294_79794438_79815895_79816111_79843901_79844129_79848601
42403	chr4	-	3349	4	NNC	ENSMUSG00000039911.14	novel	3092	3	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	27.8128667266709	2	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGAGTCCTTTCGTGC	NA	False	NA	NA	False	NA	NA	NA	150039499	149980739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149982799_149990872_149991715_150011257_150011516_150039309
42405	chr16	+	1603	6	FSM	ENSMUSG00000058550.16	ENSMUST00000050705.4	1271	6	-55	-277	-1	277	multi-exon	FALSE	canonical	2	17	junction_3	211.400094607358	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCACTTGCTTGGCTCCT	NA	False	NA	NA	False	NA	NA	NA	48104094	48114877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_48104205_48108240_48108359_48109401_48109464_48111376_48111678_48113273_48113470_48114061
42406	chr7	-	1645	12	FSM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	120	-262	-23	-15	multi-exon	FALSE	canonical	3	1777	junction_2	230.503903625897	3397	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGTAATGTTTACTT	NA	False	NA	NA	False	NA	NA	NA	89629790	89603882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620814_89621438_89621532_89626104_89626258_89629619
42408	chr15	-	1015	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4701.41214822738	211	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTCTGGATACTTTG	158	False	NA	NA	False	NA	NA	NA	98832319	98829306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829517_98830116_98830444_98830572_98830722_98830853_98831077_98832213
42410	chr1	-	2226	3	FSM	ENSMUSG00000026273.14	ENSMUST00000112942.2	1525	3	-18	-683	-3	-29	multi-exon	FALSE	canonical	3	72	junction_2	5	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAAAATCCAGGGGGTGC	NA	False	NA	NA	False	NA	NA	NA	93233604	93228955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93230625_93232329_93232829_93233546
42413	chr6	-	1512	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3166.11158994752	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446823	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439933_51440007_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51446650
42414	chr18	+	2343	11	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	-8	-48	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	840.98692617662	1	86	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCTTTTTGTTTACAAG	420	False	NA	NA	False	NA	NA	NA	61688336	61721327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705019_61708473_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713499_61720496
42415	chr6	+	2463	6	NNC	ENSMUSG00000085412.8	novel	511	3	NA	NA	10	1292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	60.2813403965108	15	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGTACATTTCAGAT	788	False	NA	NA	False	NA	NA	NA	52079938	52091956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52089331_52089742_52090322
42417	chr4	-	1625	7	FSM	ENSMUSG00000028857.17	ENSMUST00000134781.8	613	7	-170	-842	4	0	multi-exon	FALSE	canonical	3	22	junction_5	347.535609686259	1369	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	133005099	132993355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132997980_132998126_132998273_132998359_133004841
42418	chr4	+	1776	3	FSM	ENSMUSG00000086290.10_ENSMUSG00002075525.1	ENSMUST00000128131.2	614	3	-1142	-20	0	-7	multi-exon	FALSE	canonical	3	202	junction_1	0	110	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAAGTGTCCTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	132035986	132038326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132037527_132037761_132037816_132038144
42419	chr11	-	1687	9	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	-43	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	1408.24455772959	1	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCAATGCATGGCCTTC	9654	False	NA	NA	False	NA	NA	NA	106679320	106672416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676024_106677794_106677901_106679098
42420	chr10	-	2290	2	NNC	ENSMUSG00000063320.12	novel	586	2	NA	NA	2077	1742	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGTGTCATGCAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	82456683	82453942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_82454699_82455149
42421	chr10	+	2102	11	FSM	ENSMUSG00000025359.11	ENSMUST00000054125.9	2130	11	-86	114	-86	-114	multi-exon	FALSE	canonical	3	48	junction_3	12.3385574521497	209	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	128542040	128555993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
42422	chr17	-	2249	8	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	1	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	80514728	80507508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
42423	chrX	+	3173	5	ISM	ENSMUSG00000031381.17	ENSMUST00000112255.8	3597	6	2674	365	-1	-363	3prime_fragment	FALSE	canonical	3	160	junction_1	42.1337157155644	1	130	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATTAAATGCTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	163205578	163216544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
42424	chr7	-	2918	4	NNC	ENSMUSG00000060314.14	novel	3851	3	NA	NA	9	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	25.6645020732269	75	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAATAGTAAAAATGTTC	NA	False	NA	NA	False	NA	NA	NA	140402082	140389616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140390077_140391031_140393228_140398500_140398628_140401947
42426	chrX	-	1960	13	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	7	-13	at_least_one_novel_splicesite	FALSE	canonical	2	43	junction_11	392.230763992605	1	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGAAAATTGTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100128971	100122840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127531_100127782_100127881_100128877
42427	chr7	+	1371	1	ISM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	4223	4	980	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	43900368	43901739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43900400_43901700
42430	chr11	-	1778	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	12	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	382.999216709382	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGATGTCTCAGGTTTGT	6407	False	NA	NA	False	NA	NA	NA	102076071	102053324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054548_102054972_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
42432	chr17	+	2472	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	13	-11	13	11	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	331	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATATTAAGGTC	7936	False	NA	NA	False	NA	NA	NA	35150241	35154908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
42433	chr7	+	1464	7	NNC	ENSMUSG00000033685.14	novel	742	4	NA	NA	-80	316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	212.486077975319	21	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGTTGGTGTCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	100145205	100148825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100145415_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147942_100148091_100148449
42434	chr1	-	2148	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	228	2	38	-2	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	381	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTTGAGTTGCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	74343336	74327407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
42435	chr1	-	2020	4	FSM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	-36	0	-36	0	multi-exon	FALSE	canonical	3	64	junction_2	6.37704215656966	314	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTAGTGTGGCACTGGTTT	NA	False	NA	NA	False	NA	NA	NA	190915573	190902492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_190903877_190904571_190904680_190909427_190909672_190915289
42436	chr15	-	1185	1	NIC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	4334	-267	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTTATATTTTTATTT	9319	False	NA	NA	False	NA	NA	NA	81927386	81926201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81926200_81927400
42437	chr13	-	2022	9	NIC	ENSMUSG00000021713.10	novel	2342	11	NA	NA	5	-258	intron_retention	FALSE	canonical	1	1	junction_4	109.832756384423	3	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTAAAGGCCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	104365325	104341889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104353596_104353788_104356544_104356993_104359345_104359701_104361857_104361961_104365113
42438	chrX	-	1765	6	NNC	ENSMUSG00000031402.13	novel	2525	12	NA	NA	8106	5577	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGAACCGGGAAAATGGCG	NA	False	NA	NA	False	NA	NA	NA	74153348	74147761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74148066_74149258_74149377_74149881_74149982_74150774_74150871_74151809_74151907_74152298
42440	chr10	+	2601	10	FSM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	-6	5	-6	-5	multi-exon	FALSE	canonical	3	34	junction_1	20.085619202938	97	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACAGTTTGCTTTATTAAT	NA	False	NA	NA	False	NA	NA	NA	41763428	41784415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41763592_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
42441	chr3	+	2252	4	ISM	ENSMUSG00000002233.14	ENSMUST00000106787.8	959	5	1601	-107	-1348	-8	3prime_fragment	FALSE	canonical	3	201	junction_2	25.9615099714943	6	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCGTGTGTGGCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	104697950	104701767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104699369_104699880_104700002_104700215_104700347_104701185
42442	chr5	-	1724	11	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	-7	468	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	552.842735323528	1	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACCGTGCTGGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	117527094	117517213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520914_117521455_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
42443	chrX	-	2145	6	NIC	ENSMUSG00000025283.16	novel	1272	7	NA	NA	2	-7	intron_retention	FALSE	canonical	3	28	junction_3	473.356271744655	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCAGCCTGAGCATTTT	NA	False	NA	NA	False	NA	NA	NA	153999339	153996134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_153996664_153996892_153996934_153997028_153998227_153998596_153998681_153998780_153998833_153999098
42444	chr11	-	1832	14	NNC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	964.366113050433	3	86	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGACCGTTCTTTGGT	5926	False	NA	NA	False	NA	NA	NA	100510450	100473656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475945_100480719_100480816_100481712_100481878_100482237_100482392_100483688_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
42445	chr8	+	3074	5	FSM	ENSMUSG00000044676.11	ENSMUST00000212754.2	4863	5	-34	1823	-18	-92	multi-exon	FALSE	canonical	3	11	junction_2	6.21992765231236	52	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAACATCAGATCCAAA	917	False	NA	NA	False	NA	NA	NA	110806359	110817550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_110806637_110809309_110809375_110810288_110810416_110810975_110811084_110815053
42446	chr2	-	2026	11	NNC	ENSMUSG00000027635.16	novel	2080	11	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	62.0822035691389	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTTGAAGTGTAC	8129	False	NA	NA	False	NA	NA	NA	156849000	156837201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156838202_156838652_156838741_156839568_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
42447	chr4	-	1175	6	NNC	ENSMUSG00000059291.16	novel	833	6	NA	NA	20	380	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4570.86129301689	158	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGTCACTAGTGATCAAA	NA	False	NA	NA	False	NA	NA	NA	135780684	135776661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135777328_135777590_135777702_135778481_135778596_135778924_135779032_135779877_135780029_135780658
42450	chr5	-	2341	10	NIC	ENSMUSG00000001082.13	novel	1906	13	NA	NA	-18	-12	intron_retention	FALSE	canonical	3	69	junction_9	104.484389524565	1	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTTGTACCAAGTGCCT	NA	False	NA	NA	False	NA	NA	NA	34794502	34791004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34792307_34792394_34792504_34792713_34792876_34792952_34793469_34793753_34793851_34793937_34794131_34794270
42451	chr11	-	2149	12	NIC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	-59	430	combination_of_known_junctions	TRUE	canonical	3	8	junction_11	1375.04181754592	42	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCCTCTGGTTTTTATT	8218	False	NA	NA	False	NA	NA	NA	102297840	102293380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102297651
42452	chr2	+	1432	4	FSM	ENSMUSG00000038900.18	ENSMUST00000154340.8	1417	4	-15	0	-6	0	multi-exon	FALSE	canonical	3	2580	junction_3	1756.95310757636	697	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32852135_32852585_32852685_32852996_32853866_32854002
42453	chr2	-	1900	1	NIC	ENSMUSG00000058835.15	novel	3360	10	NA	NA	4939	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAATTTGGATATTGT	NA	False	NA	NA	False	NA	NA	NA	22832283	22830383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_22830400_22832300
42454	chr5	-	2251	11	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	-5	-9	intron_retention	FALSE	canonical	3	174	junction_10	71.3145146516472	101	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTACCAAGTGCCTTTC	NA	False	NA	NA	False	NA	NA	NA	34794489	34791001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792307_34792394_34792504_34792713_34792876_34792952_34793469_34793753_34793851_34793937_34794128_34794270
42455	chr1	+	2329	7	NIC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	1	0	intron_retention	FALSE	canonical	3	409	junction_5	19.2440466984814	11	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	NA	False	NA	NA	NA	171954323	171962850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171954416_171956197_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
42456	chr8	+	2319	6	Antisense	novelGene_ENSMUSG00000031651.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTCTTCAGTCACAGCT	NA	False	NA	NA	False	NA	NA	NA	43583052	43594465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43583729_43584108_43584611_43589312_43589408_43589570_43589596_43591602_43591838_43593679
42457	chr6	+	2251	10	NNC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	28	566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	779.331923453403	1	109	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAACATTTGCTTTTGCT	565	False	NA	NA	False	NA	NA	NA	88061491	88080935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077747_88077843_88077964_88078956_88079203_88080346
42460	chr9	+	2480	10	NNC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_6	56.3303746757565	144	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTATGGTAACTTGGGT	NA	False	NA	NA	False	NA	NA	NA	107926487	107929998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107926594_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927811_107927892_107927972_107928047_107928442_107928524_107929363_107929503
42461	chr17	-	2332	12	NNC	ENSMUSG00000079553.12	novel	2260	12	NA	NA	-20	-3	intron_retention	FALSE	canonical	0	0	junction_1	204.125103432282	1	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAATCTTTTTCTTGTTTG	9795	False	NA	NA	False	NA	NA	NA	34109533	34094644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34094844_34095424_34095514_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
42462	chr5	+	2554	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	484	2924	105	-157	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	2	104	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGACACATTATATTACT	3179	False	NA	NA	False	NA	NA	NA	32616670	32649943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
42463	chr1	-	1745	16	NNC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	30	225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	138.429605054539	7	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTCTCTGGAGACTTCT	NA	False	NA	NA	False	NA	NA	NA	58544054	58503137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58503331_58508920_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
42465	chr9	+	3422	6	FSM	ENSMUSG00000070305.11	ENSMUST00000114664.8	3424	6	-5	7	-5	-7	multi-exon	FALSE	canonical	3	16	junction_2	3.70944739819828	52	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGCTACCCTTTTCGTG	NA	False	NA	NA	False	NA	NA	NA	44966478	44988727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44966617_44973338_44973506_44977636_44977848_44979504_44979671_44981953_44982018_44986051
42466	chr1	-	3176	13	NNC	ENSMUSG00000001674.12	novel	2258	13	NA	NA	361	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	214.133136155991	3	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTTTTTTATACCTTT	NA	False	NA	NA	False	NA	NA	NA	121495090	121481567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121494740_121494811
42467	chr2	-	2488	14	NIC	ENSMUSG00000040434.17	novel	2291	14	NA	NA	0	-25	intron_retention	FALSE	canonical	0	0	junction_9	35.4661268514924	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGTCTAATTCTCTTATA	NA	False	NA	NA	False	NA	NA	NA	92201378	92195440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
42468	chr3	+	1573	15	NIC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-15	-51	combination_of_known_splicesites	FALSE	canonical	2	45	junction_3	244.19793744637	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAAATTTGACCTTAA	NA	False	NA	NA	False	NA	NA	NA	69629400	69656324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_69629456_69629741_69629800_69631589_69631725_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
42471	chr15	+	2347	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	104	1	0	-1	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	2	127	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTGTCTCAGTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	99290866	99307929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
42474	chr18	+	1669	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	9	-298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2139.37706620524	1	77	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGCTGGGTTTGAAC	NA	False	NA	NA	False	NA	NA	NA	77861700	77870057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866316_77866417_77866599_77866790_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
42476	chr3	+	545	1	ISM	ENSMUSG00000053965.11	ENSMUST00000066728.10	6939	21	127400	2483	61113	-2481	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTCTCTCTTGCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	122649995	122650540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_122650000_122650500
42477	chrX	+	1826	1	ISM	ENSMUSG00000108981.2	ENSMUST00000207320.2	5010	15	65981	67	65981	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGCTTTTGATAAGTACA	NA	False	NA	NA	False	NA	NA	NA	160147355	160149181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_160147400_160149200
42478	chr12	+	3238	14	FSM	ENSMUSG00000035293.14	ENSMUST00000121521.2	2594	14	-73	-571	11	-136	multi-exon	FALSE	canonical	0	0	junction_10	45.3807038731625	3	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGATATGTACAGTCTCA	NA	False	NA	NA	False	NA	NA	NA	51395081	51420724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51414534_51414740_51415828_51416002_51418342_51418534_51419212
42479	chr3	+	2667	1	NIC	ENSMUSG00000052310.10	novel	2364	4	NA	NA	2772	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCTATGGTATCTGATT	NA	False	NA	NA	False	NA	NA	NA	90158250	90160917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90158200_90160900
42480	chr1	-	1644	14	Antisense	novelGene_ENSMUSG00000026427.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	10	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCCCCTTTGTGAACATA	NA	False	NA	NA	False	NA	NA	NA	131101215	131082088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_131082155_131082902_131082987_131083367_131083464_131085929_131086036_131088145_131088361_131089020_131089137_131091252_131091301_131092137_131092242_131092354_131092507_131092856_131092947_131094063_131094158_131095854_131095976_131098671_131098848_131101039
42481	chr8	-	2481	1	Genic_Genomic	ENSMUSG00000039814.16	novel	NA	NA	NA	NA	15664	2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAGTGTTAGTATCTAAT	5830	False	NA	NA	False	NA	NA	NA	18985223	18982742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_18982700_18985200
42482	chr7	-	2159	19	Intergenic	novelGene_2970	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAAGGAAGCCGGGATTT	NA	False	NA	NA	False	NA	NA	NA	55553976	55491777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_55491814_55521605_55521718_55521808_55521904_55523192_55523267_55523399_55523502_55524649_55524835_55527436_55527536_55527626_55527756_55528824_55528928_55536471_55536565_55537568_55537686_55541734_55541859_55542866_55542992_55544726_55544894_55546413_55546562_55547983_55548139_55549661_55549820_55550251_55550347_55553934
42483	chr8	-	1534	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-15	253	-15	-253	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	6	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTATGCAGTTCCTAAT	NA	False	NA	NA	False	NA	NA	NA	43760032	43748356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
42484	chr4	-	1606	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	10	10	10	-10	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	46	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAAGTCAGTCCTCGGT	NA	False	NA	NA	False	NA	NA	NA	124830700	124812267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
42485	chr10	+	2829	15	FSM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	38	2	-19	2	multi-exon	FALSE	canonical	3	19	junction_5	7.35298079221021	80	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGCCTCCTGTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	80691146	80704540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
42486	chr1	+	2713	16	FSM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	20	0	20	0	multi-exon	FALSE	canonical	3	89	junction_1	11.5808270669912	98	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTAAGCGATGACAT	NA	False	NA	NA	False	NA	NA	NA	125488772	125523557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_125489022_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
42487	chr5	-	3293	4	NNC	ENSMUSG00000063919.12	novel	6555	5	NA	NA	2227	553	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	816	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCTCCCCCATCCCAA	NA	False	NA	NA	False	NA	NA	NA	116603420	116576780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116576898_116577427_116577495_116599781_116599923_116600452
42488	chrX	+	2019	6	NNC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	-18	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.6719040271741	85	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGACTGGATTTGATCTA	NA	False	NA	NA	False	NA	NA	NA	164953469	164973507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_164953547_164959840_164959999_164960055_164960076_164961787_164961827_164963348_164963806_164972239
42489	chr3	+	1445	9	NNC	ENSMUSG00000078578.10	novel	787	9	NA	NA	6	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1197.3460169788	2	31	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACCAATGAGTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	135144520	135171812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164641_135165735_135165842_135168710_135168805_135170955_135171460_135171509
42490	chr11	-	664	3	NNC	ENSMUSG00000046909.10	novel	894	3	NA	NA	-8	-1894	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	13	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGAACTTACTCTGGAAA	NA	False	NA	NA	False	NA	NA	NA	80032977	80030665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_80031150_80031291_80031397_80032902
42491	chr4	-	828	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	13	-30	1	4	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTGTCACCAACAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	148236369	148230544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
42492	chr2	+	2227	9	NNC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	82.9034641917936	177	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	25390864	25395483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25390899_25392005_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
42493	chr2	-	2119	6	FSM	ENSMUSG00000039483.11	ENSMUST00000041726.4	4147	6	2025	3	-17	-3	multi-exon	FALSE	canonical	3	80	junction_2	13.3356664625357	283	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTGTGTCTTTGTATG	1707	False	NA	NA	False	NA	NA	NA	30718320	30713111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934_30717111_30718085
42494	chr9	+	999	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2028.1482249141	6	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956857	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957663_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
42495	chr9	+	2433	1	Intergenic	novelGene_1086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTCCTGGAACTCACTCT	6487	False	NA	NA	False	NA	NA	NA	59551318	59553751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_59551300_59553800
42496	chr9	+	1671	4	ISM	ENSMUSG00000025237.17	ENSMUST00000214956.2	514	5	9957	14	-609	-14	3prime_fragment	FALSE	canonical	3	52	junction_2	6.59966329107444	9	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGGGCAAAAAAAGTATAGA	695	False	NA	NA	False	NA	NA	NA	59554870	59557406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59556193_59556572_59556637_59556801_59556887_59557206
42498	chr6	-	1336	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	2	-150	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4019.71419226542	1	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTAGAAAATAGAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	87828002	87820213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821003_87822103_87822303_87822446_87822540_87822637_87822776_87827885
42499	chr9	+	1628	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	-51	9	-51	-1	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	1683	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGTTCTCCCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	106354416	106362614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
42503	chr6	+	1989	10	NNC	ENSMUSG00000029781.8	novel	549	2	NA	NA	5499	-841	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	244.203062639413	16	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGTAGCTGTCATGGA	NA	False	NA	NA	False	NA	NA	NA	56814542	56855502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_56814733_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
42504	chr13	-	1865	9	NNC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	-4775	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	413.379951588124	483	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	-10	True	NA	NA	False	NA	NA	NA	56288949	56221434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56288838
42505	chr15	+	1845	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	679.560085439266	1	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGTTTGTGGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	78959433	78978599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966057_78966128_78968311_78968499_78969803_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
42506	chr17	-	1494	8	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	-1	-599	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1026.11024987472	156	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGATTTTTGCGTGTG	NA	False	NA	NA	False	NA	NA	NA	47093564	47085431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47085794_47086293_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
42507	chr8	-	2398	8	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	8	0	intron_retention	FALSE	canonical	3	36	junction_7	28.8097205817759	6	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	27713848	27687486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27690373_27690749_27690932_27692399_27692492_27713715
42508	chr5	+	1434	12	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1508	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	517.724215810274	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCAGTGCTTCCAGAT	NA	False	NA	NA	False	NA	NA	NA	21991788	22008780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005668_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
42509	chr6	+	2154	10	FSM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	1	1	1	-1	multi-exon	TRUE	canonical	3	24	junction_1	4.54062594260057	243	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTGACCCTGGAAAGAGT	3777	False	NA	NA	False	NA	NA	NA	125326686	125339446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
42510	chr7	+	2504	10	ISM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	-12	0	-12	0	intron_retention	FALSE	canonical	3	203	junction_3	16.1229841308596	298	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	127070649	127075930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393
42511	chr11	-	1931	15	ISM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	4129	-25	-4034	0	3prime_fragment	FALSE	canonical	3	409	junction_6	124.314692844985	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	NA	False	NA	NA	NA	70856651	70833902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532
42512	chr2	+	1998	11	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-4541	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	64.8759585670994	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGTTGTTTTATTCA	NA	False	NA	NA	False	NA	NA	NA	180373669	180384070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
42513	chr8	-	2215	2	ISM	ENSMUSG00000050052.13	ENSMUST00000193921.2	722	3	6166	-1748	-2419	0	3prime_fragment	FALSE	canonical	3	296	junction_1	0	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	NA	False	NA	NA	False	NA	NA	NA	14005806	14002007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_14004136_14005719
42514	chr7	+	2759	14	NIC	ENSMUSG00000030589.16	novel	2296	17	NA	NA	2572	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	15.6541769006828	55	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCGCACTGACTGCCAGT	425	False	NA	NA	False	NA	NA	NA	28837069	28851038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28849482_28849603_28849717_28850870
42515	chr11	+	2110	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	-48	0	-13	0	multi-exon	TRUE	canonical	3	249	junction_1	30.335622624235	248	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	113575224	113585473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
42517	chr6	+	1501	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	131	257	-2	-257	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	171	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTGGAGCTGACGTTGG	NA	False	NA	NA	False	NA	NA	NA	51447640	51460427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
42518	chr7	+	4150	12	Antisense	novelGene_ENSMUSG00000074006.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCGCAGGCAGGCCCGC	NA	False	NA	NA	False	NA	NA	NA	97770784	97811217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_97773261_97774446_97774585_97775034_97775151_97775451_97775652_97777681_97777803_97778450_97778651_97780400_97780474_97780880_97781076_97782038_97782232_97784965_97785180_97801019_97801154_97811127
42519	chrX	+	2373	5	NNC	ENSMUSG00000045427.14	novel	2364	4	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	344.272693514894	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAATCTTGCATAGTTT	NA	False	NA	NA	False	NA	NA	NA	133501976	133507802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603_133507048_133507095
42520	chr15	+	1637	4	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	281	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	635.924698547102	71	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	100513510	100518642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100515941_100517354
42521	chr17	+	3077	9	FSM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	16	6	-6	3	multi-exon	FALSE	canonical	3	89	junction_2	16.5529453572468	219	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	26042616	26047698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
42522	chr7	-	2613	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	221	1006	19	111	multi-exon	FALSE	canonical	3	346	junction_6	24.644133852366	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATGTATATATTAATT	NA	False	NA	NA	False	NA	NA	NA	109585437	109572399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
42523	chr2	+	1955	3	Genic_Genomic	ENSMUSG00000052368.3	novel	1361	1	NA	NA	-14010	4	multi-exon	FALSE	non_canonical	0	0	junction_1	0	118	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTATTTCTCCATTTCT	NA	False	NA	NA	False	NA	NA	NA	168847934	168863290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_168848074_168861030_168861370_168861813
42524	chr18	+	1491	8	NNC	ENSMUSG00000042705.10	novel	1610	7	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	484.581915317794	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAACTCAAGCGTACAAT	NA	False	NA	NA	False	NA	NA	NA	47091928	47221056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094_47220273_47220339
42525	chr19	-	2029	8	NNC	ENSMUSG00000024758.16	novel	4956	8	NA	NA	5	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	315.837855584805	9	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCTGCAACTTTATTCT	8979	False	NA	NA	False	NA	NA	NA	7460627	7403262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7403838_7403884_7404492_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
42526	chr11	+	1464	4	NNC	ENSMUSG00000084936.2	novel	466	2	NA	NA	549	3092	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	32	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATAAGCTTCCAAGCAGC	1497	False	NA	NA	False	NA	NA	NA	97052364	97055593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97053508_97054178_97054343_97054740_97054855_97055550
42527	chr16	+	3153	10	NIC	ENSMUSG00000022833.8	novel	4107	13	NA	NA	10	-3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_5	45.3352396113364	63	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATACGTGAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	34511111	34545561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34529893_34530036_34535707_34535779_34541808_34542028_34542106_34542240_34543379
42528	chr15	-	1193	9	NNC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	57	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	10103.8451150725	880	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	4398	False	NA	NA	False	NA	NA	NA	79966727	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965246_79965842_79965985_79966590
42530	chr18	-	2357	6	FSM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	10	8	10	-8	multi-exon	FALSE	canonical	3	29	junction_4	10.9068785635488	254	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCCATGTTCTGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	36648848	36637987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139_36648314_36648520
42532	chr11	+	1347	1	NIC	ENSMUSG00000010342.17	novel	4763	31	NA	NA	-3184	-20071	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTGAGTGCTGGGAA	1499	False	NA	NA	False	NA	NA	NA	87424365	87425712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87424400_87425700
42533	chr12	+	3417	13	FSM	ENSMUSG00000004151.18	ENSMUST00000095767.11	6576	13	224	2935	-13	250	multi-exon	FALSE	non_canonical	0	0	junction_8	7.23225798458238	36	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAAGCAGTTCACCAGCA	549	False	NA	NA	False	NA	NA	NA	38830304	38917548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_38830421_38830846_38830979_38831797_38831886_38833236_38833285_38843169_38843224_38877776_38877907_38881079_38881269_38885067_38885316_38902218_38902288_38904158_38904228_38906939_38907110_38911285_38911388_38915546
42534	chr12	+	382	1	ISM	ENSMUSG00000004151.18	ENSMUST00000095767.11	6576	13	89147	874	31831	-874	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCTAAAAACTGACTTGA	NA	False	NA	NA	False	NA	NA	NA	38919227	38919609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_38919200_38919600
42535	chr4	+	1911	7	NIC	ENSMUSG00000036073.19	novel	1859	10	NA	NA	-203	-31	intron_retention	FALSE	canonical	3	43	junction_2	105.016533089901	21	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTCTCACATTTTAACC	6	True	NA	NA	False	NA	NA	NA	41755554	41758664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41757279_41757459_41757593_41757694_41757779_41758083
42536	chr17	+	1275	14	ISM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	27	5011	27	-2461	5prime_fragment	FALSE	canonical	3	471	junction_10	148.060038997459	1	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCCTTGTCTCGGAGAGC	NA	False	NA	NA	False	NA	NA	NA	6320771	6353578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495
42538	chr9	-	2720	15	FSM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	-14	0	-14	0	multi-exon	TRUE	canonical	3	27	junction_4	6.31163486696415	58	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	8065	False	NA	NA	False	NA	NA	NA	118917343	118900594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118917135
42540	chr12	+	1212	8	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1051.7928522678	33	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	NA	False	NA	NA	NA	87313463	87320754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318166_87319905_87319999_87320220_87320273_87320364
42542	chr15	-	2006	11	FSM	ENSMUSG00000098112.9	ENSMUST00000183211.8	2036	11	20	10	-6	-4	multi-exon	FALSE	canonical	2	83	junction_1	21.2593508837876	238	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCGAGGTGTCTTGCCC	NA	False	NA	NA	False	NA	NA	NA	100567414	100538967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
42543	chr16	-	438	2	FSM	ENSMUSG00000033918.17	ENSMUST00000153275.2	356	2	28	-110	7	110	multi-exon	FALSE	canonical	3	1878	junction_1	0	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTATGAGTTCAGATTAAA	NA	False	NA	NA	False	NA	NA	NA	20121083	20116763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20117077_20120958
42544	chr10	+	4306	7	Genic_Genomic	ENSMUSG00000112894.2	novel	597	2	NA	NA	-28980	91	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGGAATCTTTGTCTAGG	NA	False	NA	NA	False	NA	NA	NA	119975573	120006341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_119979095_119981548_119981720_119981805_119981862_119982331_119982541_120001003_120001119_120002309_120002423_120006220
42545	chr4	+	2431	20	NNC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	5	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	170.004904605802	1	98	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGAGGGAAAGAAGTGT	4008	False	NA	NA	False	NA	NA	NA	155709371	155734379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155709399_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732954_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
42546	chr2	-	2970	19	NNC	ENSMUSG00000027014.15	novel	3388	20	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	64.6264909563666	1	132	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGAATCATTGTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	77776517	77726115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755010_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
42547	chr7	+	2535	11	NIC	ENSMUSG00000030727.13	novel	2782	12	NA	NA	-11	-11	intron_retention	FALSE	canonical	3	161	junction_4	16.1186227699515	2	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATCAGCTAGTCAGTTGC	NA	False	NA	NA	False	NA	NA	NA	126028259	126045062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126044109_126044468
42548	chr8	+	3881	9	NNC	ENSMUSG00000055932.16	novel	4707	8	NA	NA	4	-905	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	123.382978465427	2	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGGGTTTCCTTCCCCAAA	NA	False	NA	NA	False	NA	NA	NA	92040189	92251953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_92040249_92109555_92109639_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399
42549	chr6	-	4818	24	Intergenic	novelGene_4177	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	16	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGCGGGGCGCGGCGG	9742	False	NA	NA	False	NA	NA	NA	58897383	58808464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_58808626_58820586_58820841_58831854_58832016_58832720_58832797_58833574_58833798_58834677_58834770_58835935_58836067_58837234_58837396_58839955_58840033_58845624_58845752_58847138_58847198_58850718_58850829_58851193_58851384_58853471_58853635_58853749_58853878_58862042_58862147_58864396_58864564_58865604_58865749_58867052_58867217_58871029_58871099_58871525_58871607_58893393_58893579_58893764_58893870_58895697
42550	chr17	-	3976	1	ISM	ENSMUSG00000024077.16	ENSMUST00000145910.9	8629	18	83302	6	30458	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	139	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATAGTTCATGTGCTCCT	5019	False	NA	NA	False	NA	NA	NA	78961323	78957347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_78957300_78961300
42553	chr6	-	2626	18	NNC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	334	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	77.3980409791155	1	110	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAATAAAACTATTAAAAT	NA	False	NA	NA	False	NA	NA	NA	146478944	146451163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455703_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
42554	chr4	+	1811	18	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	68.8289087892661	520	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTCCTTTGGAGAACTT	NA	False	NA	NA	False	NA	NA	NA	116664945	116676624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116664969_116668045_116668141_116668996_116669089_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
42556	chr1	-	4065	6	NIC	ENSMUSG00000042699.12	novel	2346	19	NA	NA	0	2087	intron_retention	FALSE	canonical	3	83	junction_2	16.7403703662733	18	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTTTAAGTGTAGTCT	NA	False	NA	NA	False	NA	NA	NA	153363397	153350497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
42557	chr12	+	2683	14	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-11	1	intron_retention	FALSE	non_canonical	0	0	junction_1	145.354982735086	1	134	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGGATCTGTGCTCCTT	NA	False	NA	NA	False	NA	NA	NA	85157655	85180865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157744_85162046_85162100_85165141_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168766_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
42558	chr17	+	2928	11	NNC	ENSMUSG00000069135.12	novel	3077	12	NA	NA	116	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	145.700549072404	2	106	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTACAGTGTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	8384487	8415307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405351_8405434_8411022_8411114_8413352
42559	chr9	+	3781	9	NNC	ENSMUSG00000031993.8	novel	5762	11	NA	NA	33	-12898	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	12.8549601321824	6	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTCGTCTTTAAATATT	NA	False	NA	NA	False	NA	NA	NA	30338436	30363071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_30340553_30343530_30343670_30344625_30344727_30344831_30344952_30347107_30347239_30348070_30348168_30348645_30348827_30351391_30351522_30362305
42560	chr5	-	2177	3	Antisense	novelGene_ENSMUSG00000106820.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	51	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGAAGCCGAGAACAGGAA	NA	False	NA	NA	False	NA	NA	NA	147359815	147355420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_147355512_147357439_147358096_147358385
42561	chr14	+	1562	7	NIC	ENSMUSG00000040618.8	novel	2417	9	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	604.460273485547	21	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	NA	False	NA	NA	False	NA	NA	NA	55781056	55786329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55781231_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
42562	chr13	-	1755	16	NIC	ENSMUSG00000039233.13	novel	1844	17	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_14	32.9265850036107	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTTCTCTGCCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	14214218	14172535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14203860_14203992_14214122
42563	chr8	-	3045	3	FSM	ENSMUSG00000055707.14	ENSMUST00000066597.13	2991	3	-54	0	-9	0	multi-exon	FALSE	canonical	3	54	junction_2	2	67	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGAGCAGACCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	70929609	70902917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70905670_70908115_70908299_70929499
42564	chr4	-	3132	15	NIC	ENSMUSG00000038578.16	novel	3295	17	NA	NA	341	481	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	22.6805679661094	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTCAACTCCAAGG	5	True	NA	NA	False	NA	NA	NA	59438292	59314201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
42565	chr17	+	1559	6	NNC	ENSMUSG00000046711.17	novel	1030	5	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2255.93217983165	2	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGTCTCTGGTGTAAGG	NA	False	NA	NA	False	NA	NA	NA	27775627	27782640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27781807_27781878
42566	chr19	-	2951	10	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35321	-2	intron_retention	FALSE	canonical	3	31	junction_7	13.1242871646519	3	71	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGTCTTTGCATTTCCTT	880	False	NA	NA	False	NA	NA	NA	44145560	44136078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44143034_44143886_44144116_44144279_44144505_44145490
42567	chr13	+	2778	3	Antisense	novelGene_ENSMUSG00000035248.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCAAAAAATGGTCGCTAT	NA	False	NA	NA	False	NA	NA	NA	59946810	59950877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_59946963_59947454_59950016_59950812
42570	chr2	+	521	1	NIC	ENSMUSG00000099041.2	novel	4238	13	NA	NA	41052	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATATATTTTATATGTA	70	False	NA	NA	False	NA	NA	NA	30171630	30172151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30171600_30172200
42571	chr11	+	2846	6	Antisense	novelGene_ENSMUSG00000017453.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGGACAGTCTTATATA	563	False	NA	NA	False	NA	NA	NA	77771446	77784446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_77772087_77772950_77773103_77773442_77773590_77773954_77774145_77774610_77774821_77782939
42572	chr2	-	1920	13	NNC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	1	111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	43.306722598486	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTATGTGGGAACTTCTA	NA	False	NA	NA	False	NA	NA	NA	12424258	12352331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369340_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
42573	chr9	-	2289	13	Intergenic	novelGene_1000	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	90	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCGCACTGACCGACATCC	NA	False	NA	NA	False	NA	NA	NA	25219858	25163952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_25164002_25176688_25176790_25188836_25188945_25197961_25198054_25199470_25199623_25204996_25205091_25207687_25207766_25209095_25209203_25210785_25210838_25212705_25212834_25215012_25215147_25217419_25217566_25218810
42574	chr15	+	2510	6	NIC	ENSMUSG00000023051.12	novel	1523	9	NA	NA	7	-26	intron_retention	FALSE	canonical	3	365	junction_3	16.2849623886578	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGAGCTTGTTCTC	NA	False	NA	NA	False	NA	NA	NA	102426880	102432083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427038_102427556_102427727_102428909_102429649_102430158_102430232_102430415_102430987_102431283
42575	chr2	+	1351	11	NIC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	-5	127	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	437.508045640306	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCACATGGTATATAGC	4159	False	NA	NA	False	NA	NA	NA	127429333	127445902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
42577	chr16	+	1670	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-41	-660	-41	660	mono-exon	FALSE	NA	NA	NA	NA	NA	6	75	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATCTACCAA	NA	False	NA	NA	False	NA	NA	NA	24348102	24349772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24349800
42578	chr17	-	4234	9	NIC	ENSMUSG00000041168.11	novel	4362	16	NA	NA	6298	0	intron_retention	FALSE	canonical	3	702	junction_7	69.3783782961234	4	94	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTAAGCCTGAGTCTCAG	7881	False	NA	NA	False	NA	NA	NA	56927577	56921296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56921564_56921635_56921801_56921873_56922416_56922503_56923043_56923129_56923253_56923358_56923447_56924753_56927070_56927222_56927353_56927513
42579	chr7	-	2338	6	Fusion	ENSMUSG00000062116.11_ENSMUSG00000063535.8	novel	2042	5	NA	NA	6001	-6	multi-exon	FALSE	canonical	0	0	junction_5	21.7200368323813	229	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAATCTTTAATGACTCT	3023	False	NA	NA	False	NA	NA	NA	7133722	7117694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370_7122410_7124221_7124611_7133543
42580	chr6	-	1488	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2867.37584038089	2	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446825	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439909_51440285_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51446650
42581	chr4	-	1284	9	NIC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	0	-14	intron_retention	FALSE	canonical	3	1341	junction_2	43.5997419717135	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6426	False	NA	NA	False	NA	NA	NA	129494392	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
42582	chr5	+	2988	16	Antisense	novelGene_ENSMUSG00000105565.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGCACCGGGATGCAGCC	NA	False	NA	NA	False	NA	NA	NA	23711744	23880931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_23712713_23718942_23719043_23719631_23719701_23723412_23723522_23723616_23723718_23729145_23729612_23730491_23730744_23732876_23733059_23745370_23745480_23750520_23750607_23751975_23752066_23753452_23753560_23770109_23770259_23821318_23821388_23880717_23880773_23880855
42583	chr13	+	3578	1	Antisense	novelGene_ENSMUSG00000113204.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCGGAAGACCCCGCCTCA	NA	False	NA	NA	False	NA	NA	NA	74761858	74765436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_74761900_74765400
42584	chr7	-	3558	20	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	53.818768415814	1	151	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGAGCCTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	140697703	140681138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684303_140684407_140684494_140684581_140684640_140686675_140687001_140687079_140687414_140687513_140687597_140687709_140687771_140687958_140688051_140688163_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
42586	chr9	+	3065	3	ISM	ENSMUSG00000032536.13	ENSMUST00000045903.8	4827	16	93278	4	5998	-2	3prime_fragment	FALSE	canonical	3	114	junction_1	62	109	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAAGCTTTTGTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121289359	121303980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_121289644_121298050_121298154_121301302
42587	chr19	+	1095	2	Intergenic	novelGene_1265	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	184	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTACATACAGATGCCA	NA	False	NA	NA	False	NA	NA	NA	41513738	41515412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41513984_41514562
42588	chr6	-	1163	7	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2086.18096051134	6	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125449307_125449475_125471536
42589	chrX	-	1262	6	ISM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	637	4	436	-2	3prime_fragment	FALSE	canonical	3	764	junction_2	197.930694941437	70	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATACTGATAATGCTTTT	7015	False	NA	NA	False	NA	NA	NA	8011482	8008601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193
42590	chr17	-	2000	7	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	-7	1836	multi-exon	FALSE	canonical	3	16	junction_6	60.2430263368485	271	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCATGTTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	37292116	37278250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37292031
42591	chr4	+	2643	10	NNC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	-9	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	50.4618178599265	199	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATGTGTAAATAAATGTG	-19	True	NA	NA	False	NA	NA	NA	44756558	44932199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44756693_44761849_44762479_44893530_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44916183_44916313_44925974_44926071_44929117_44929236_44931035
42593	chr11	-	1842	23	Antisense	novelGene_ENSMUSG00000020464.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAAGGCCTGGGCAGCGC	NA	False	NA	NA	False	NA	NA	NA	29106912	29080745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_29080916_29082842_29082904_29083849_29083925_29084594_29084704_29085511_29085545_29087083_29087159_29087251_29087295_29088157_29088267_29088414_29088605_29089223_29089276_29089947_29090005_29091222_29091335_29091689_29091750_29095439_29095500_29096795_29096831_29097423_29097533_29098276_29098330_29103229_29103336_29104173_29104214_29104299_29104364_29104813_29104911_29105741_29105798_29106836
42594	chr11	-	1177	6	ISM	ENSMUSG00000020805.15	ENSMUST00000137701.3	1746	11	9	13682	-2	1997	5prime_fragment	FALSE	canonical	3	49	junction_1	4.40908153700972	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	72157430	72147895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_72148309_72149783_72149953_72151020_72151209_72152438_72152576_72152848_72152978_72157289
42595	chr11	-	1090	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8035.23243534373	5	26	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCACTGTTTCTATTTG	NA	False	NA	NA	False	NA	NA	NA	33113082	33102513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102765_33104018_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111155_33111547_33111628_33112921
42596	chr7	-	569	1	Genic_Genomic	ENSMUSG00000000486.14	novel	NA	NA	NA	NA	111	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGCCGGAGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	126814186	126813617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_126813600_126814200
42597	chr9	+	1900	11	NNC	ENSMUSG00000010048.11	novel	2056	12	NA	NA	-1	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	214.93117503052	1	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGATACTTAGCCCCCTG	NA	False	NA	NA	False	NA	NA	NA	107464923	107470219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469632
42598	chr3	+	1031	11	NNC	ENSMUSG00000027680.16	novel	2127	15	NA	NA	0	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	479.390665324222	2	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCCTTGAGAATAGTATA	4849	False	NA	NA	False	NA	NA	NA	34074246	34123440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095300_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108458_34123385
42599	chr3	-	1793	5	NNC	ENSMUSG00000005968.15	novel	2156	11	NA	NA	-7407	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.4039832985348	1	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCCCGTGGGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	94530015	94520064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94521499_94523023_94523161_94523928_94524035_94529357_94529453_94529994
42600	chr5	+	1196	10	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	0	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1586.40796988466	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATAATGACAGTAAAGCAG	609	False	NA	NA	False	NA	NA	NA	135807489	135819205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930_135819085_135819148
42601	chr3	-	1493	4	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	122	-5	intron_retention	FALSE	canonical	3	3673	junction_1	3096.61883709026	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049887	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86045900_86046346_86046556_86048545_86049109_86049814
42602	chr8	-	2052	5	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	28	-1	intron_retention	FALSE	canonical	3	83	junction_4	61.3488997456352	3	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	9300	False	NA	NA	False	NA	NA	NA	43594495	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591838_43593679
42604	chr4	-	3099	13	Antisense	novelGene_ENSMUSG00000028522.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGAGGTGGAGCCACGG	5365	False	NA	NA	False	NA	NA	NA	103021365	102972127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_102972188_102972754_102972855_102988136_102988309_102996557_102996714_102997307_102997441_102998033_102998099_103000329_103000402_103005493_103005646_103006318_103006397_103007728_103007824_103012681_103012812_103016878_103017018_103019618
42606	chr5	-	4099	21	NNC	ENSMUSG00000036555.15	novel	6037	23	NA	NA	8	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	10.9081391630287	1	110	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGGTGAAGCCTGAAGCC	4503	False	NA	NA	False	NA	NA	NA	140688041	140649276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_140651249_140651762_140651964_140656221_140656323_140657098_140657221_140657561_140657682_140660814_140660994_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140679169_140679299_140682762_140682809_140685439_140685488_140687936
42607	chr5	-	4736	15	NNC	ENSMUSG00000029192.18	novel	2765	15	NA	NA	1113	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	39.681191246931	1	123	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTATGTTCACTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	36749482	36647953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671432_36676616_36676724_36677787_36677889_36680257_36680354_36682273_36682393_36700520_36700642_36728643_36729382_36742125_36742181_36749302
42608	chr11	+	2215	9	NIC	ENSMUSG00000018899.18	novel	2136	10	NA	NA	0	-14	intron_retention	FALSE	canonical	3	46	junction_1	10.3289641300568	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTTGTTTACAGCGTG	NA	False	NA	NA	False	NA	NA	NA	53660840	53668135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_53661105_53662109_53662202_53663664_53663765_53664481_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
42609	chr5	+	1049	9	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	1666	-536	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	885.967188655991	1	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGAATGTTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	45652533	45669497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45652541_45657808_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
42610	chr7	-	988	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	28	3	28	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114305442	114304454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114304500_114305400
42611	chr9	+	857	1	ISM	ENSMUSG00000032410.14	ENSMUST00000185633.7	10256	42	101426	754	38730	-754	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCTGCCTTTCCTTTAC	NA	False	NA	NA	False	NA	NA	NA	95938245	95939102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_95938200_95939100
42612	chr11	-	4578	21	NNC	ENSMUSG00000018501.18	novel	7243	45	NA	NA	-1945	-367	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	182.974151179887	2	259	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCAACAAAGCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	62244161	62207882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212257_62216312_62216453_62217931_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231449_62233822_62234178_62235457_62235715_62236060_62236130_62240204_62240265_62242199_62242352_62244059
42613	chr4	-	2408	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	-5	10	-5	-10	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	631	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTCTGATTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	155845555	155825107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
42614	chr14	-	1445	7	NNC	ENSMUSG00000021273.12	novel	2860	8	NA	NA	-80	-1254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	318.236503597909	22	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACTGGTCCTTGTCTTTC	4227	False	NA	NA	False	NA	NA	NA	63415326	63383855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63402041_63402079_63415131
42615	chr11	-	2694	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	-1293	10	-1293	-10	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	641	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGGCATCTCCTTTTC	NA	False	NA	NA	False	NA	NA	NA	4046738	4041489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
42616	chr14	+	1534	1	Intergenic	novelGene_627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGACTGGGCGAAGTG	NA	False	NA	NA	False	NA	NA	NA	88121144	88122678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_88121100_88122700
42617	chr2	-	2314	8	NIC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	141	-4	intron_retention	FALSE	canonical	3	222	junction_7	21.296737318382	12	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGTGTTTTCATACTT	NA	False	NA	NA	False	NA	NA	NA	128785856	128768191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_128768732_128770806_128770849_128771766_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
42618	chr14	-	1777	14	NNC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-17	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	252.89827690504	1	79	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCATGTGTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	30741018	30734398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737353_30738731_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
42619	chr2	+	1689	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-165	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1091.52206116047	1	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGGGGCATACCTTGTG	NA	False	NA	NA	False	NA	NA	NA	130116585	130121158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117891_130118095_130118355_130118544_130118626_130118779_130118955_130119053_130119429_130119545_130119768_130119891_130120075_130120211_130120816
42621	chr7	+	1384	5	NNC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	740.677856763654	17	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115692551	115704445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_115692738_115698730_115698759_115701178_115701240_115702445_115702556_115703446
42622	chr2	-	2984	1	FSM	ENSMUSG00000097052.4	ENSMUST00000181621.4	139	1	-2233	-612	-2233	612	mono-exon	FALSE	NA	NA	NA	NA	NA	4	94	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGGAGAGGGGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	26530230	26527246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26527200_26530200
42623	chr11	-	1598	2	NIC	ENSMUSG00000020460.16	novel	637	5	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	0	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	NA	False	NA	NA	NA	29497860	29495845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_29496789_29497205
42624	chr19	-	2441	5	NIC	ENSMUSG00000059734.8	novel	780	7	NA	NA	-15	1	intron_retention	FALSE	canonical	3	1174	junction_4	345.316159482872	29	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTACCTGTTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	3962749	3958868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_3959075_3959152_3961071_3961160_3961257_3961565_3961747_3962709
42625	chr15	-	1692	14	ISM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	45	3428	1	2175	5prime_fragment	FALSE	canonical	3	453	junction_13	71.1533056112524	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTTCATGGTGTGCACAC	NA	False	NA	NA	False	NA	NA	NA	99549492	99521805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
42626	chr7	-	2780	8	NNC	ENSMUSG00000057342.16	novel	3548	7	NA	NA	-10	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	51.6511058419263	205	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCCTTCACCCCTTCCA	3252	False	NA	NA	False	NA	NA	NA	45367336	45359709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416_45366479_45366682_45366833_45367124
42627	chr4	+	1514	12	NNC	ENSMUSG00000028757.5	novel	2120	11	NA	NA	144	-395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	671.341595009636	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCCCCATGACACTGAT	NA	False	NA	NA	False	NA	NA	NA	138032184	138039544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144_138039285_138039351
42628	chr11	+	2994	7	FSM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	-18	1	8	-1	multi-exon	FALSE	canonical	3	78	junction_1	22.1716786313832	91	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTTTACTGTCTGTTA	451	False	NA	NA	False	NA	NA	NA	58221557	58238550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58221619_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
42629	chr2	+	2023	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	24	-6	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	46.4439447075719	174	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACAAATGTTTCTCAA	1969	False	NA	NA	False	NA	NA	NA	122016776	122036872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_122016834_122016944_122017027_122018390_122018531_122023712_122023787_122028866_122028956_122035291
42631	chr2	+	2139	11	FSM	ENSMUSG00000027306.16	ENSMUST00000068225.15	2960	11	405	416	9	-416	multi-exon	FALSE	canonical	3	927	junction_3	141.2501327433	1266	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAATGTTCATAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	119449183	119480225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
42633	chr2	+	2658	8	FSM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	456	2	-19	-2	multi-exon	FALSE	canonical	3	326	junction_5	27.592515992122	171	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGAAGAGTGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	127112604	127140850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_127112801_127126014_127126224_127126451_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
42634	chr6	+	2401	18	NNC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-2	-65	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.0153220996642	9	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATATCCAGTGTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	58572957	58669431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_58573003_58573921_58574089_58612502_58612643_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
42635	chr19	-	1746	3	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138243	0	intron_retention	FALSE	non_canonical	0	0	junction_2	7	374	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	21768583	21574675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_21576233_21581652_21581683_21768424
42636	chr18	+	1650	5	ISM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	44	89	44	-89	intron_retention	FALSE	canonical	3	317	junction_1	11.4673449411797	260	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTAAGCCCAAACCAGG	NA	False	NA	NA	False	NA	NA	NA	36893316	36896774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710
42637	chr9	+	1533	12	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-20	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1782.34764860727	1	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTATTGAGAACTGTGTT	NA	False	NA	NA	False	NA	NA	NA	108765761	108778678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108775971_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
42638	chr11	-	2012	2	Intergenic	novelGene_2372	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	3	junction_1	0	4	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGTTTTGGAAAACAGG	NA	False	NA	NA	False	NA	NA	NA	58827500	58825250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_58826084_58826321
42639	chr4	-	2555	4	FSM	ENSMUSG00000028540.7	ENSMUST00000139332.2	2558	4	-3	6	0	3	multi-exon	FALSE	canonical	3	66	junction_1	7.78888096369861	207	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTCCTGTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	117749220	117746109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117746874_117746951_117748316_117748511_117748625_117748906
42642	chr14	+	1328	9	NNC	ENSMUSG00000021771.15	novel	893	9	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	968.999967750257	6	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	NA	False	NA	NA	NA	21881368	21895947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881513_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890527_21895415
42644	chr2	+	3579	13	FSM	ENSMUSG00000026781.18	ENSMUST00000227809.2	1986	13	15	-1608	15	0	multi-exon	FALSE	canonical	3	36	junction_1	25.6850583457041	123	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAACTGTATTGACTGTG	NA	False	NA	NA	False	NA	NA	NA	22958227	23004525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_22958299_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
42645	chr11	+	1446	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	1	-36	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTGGACAGTCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653620	120655209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653906_120653993_120654180_120654234
42646	chr17	-	2625	15	NNC	ENSMUSG00000063011.8	novel	2054	17	NA	NA	-6	0	intron_retention	FALSE	canonical	0	0	junction_6	17.9689357798737	12	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6585	False	NA	NA	False	NA	NA	NA	25973358	25967586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969826_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972399_25972747_25972792_25973105_25973197_25973316
42647	chr17	+	3195	8	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	-2	-31	intron_retention	FALSE	canonical	3	87	junction_2	91.4154008370804	2	96	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTTTAGATATAATGC	NA	False	NA	NA	False	NA	NA	NA	15720187	15737658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15720287_15721415_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15735973_15736965
42648	chr2	-	3147	23	ISM	ENSMUSG00000027422.16	ENSMUST00000016072.12	5177	24	22762	0	-5336	0	3prime_fragment	FALSE	canonical	3	237	junction_15	46.7493757416225	152	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTTCTGTCTGATCTT	NA	False	NA	NA	False	NA	NA	NA	143830421	143789314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_143789850_143790255_143790400_143791189_143791289_143791591_143791676_143792347_143792444_143794111_143794196_143795153_143795250_143795861_143795934_143796035_143796129_143796654_143796745_143796876_143796958_143797033_143797127_143798687_143798781_143799474_143799566_143805023_143805059_143805165_143805336_143806681_143806821_143809359_143809514_143810436_143810556_143811329_143811483_143815388_143815512_143816380_143816530_143830067
42649	chr6	+	4559	43	NNC	ENSMUSG00000034023.17	novel	5512	44	NA	NA	4	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	74.5922095960852	5	121	14	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAATTTAGGCTTATAAT	NA	False	NA	NA	False	NA	NA	NA	113508668	113573192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539330_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113563170_113563210_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
42650	chr16	+	3406	7	FSM	ENSMUSG00000014303.14	ENSMUST00000014447.13	3619	7	201	12	201	3	multi-exon	FALSE	canonical	3	65	junction_1	16.3978318349985	105	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCACGTGCCAGGGCT	NA	False	NA	NA	False	NA	NA	NA	4412777	4433809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4412800_4426461_4426683_4428121_4428295_4429143_4429321_4429396_4429531_4429614_4429734_4431249
42651	chr18	+	2052	11	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	341.590397991513	1	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	68433430	68454978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433501_68438860_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
42652	chr4	+	3312	12	NNC	ENSMUSG00000028252.21	novel	3365	12	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	180.872175310778	1	171	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTTTCTTGTTTCTTT	-2	True	NA	NA	False	NA	NA	NA	21727757	21750539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21727911_21730396_21730504_21732226_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
42653	chr4	-	1426	3	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	978.5	2	65	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093608_41094910_41095272_41098001
42654	chr13	+	5016	24	ISM	ENSMUSG00000019726.13	ENSMUST00000110559.3	13181	53	106249	6	12555	-6	3prime_fragment	FALSE	canonical	1	3	junction_12	4.53968012663601	25	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAACCTGTATAAATGAC	866	False	NA	NA	False	NA	NA	NA	13871230	13953382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_13871374_13872911_13873119_13881086_13881264_13882203_13882281_13882606_13882796_13883872_13884019_13884098_13884196_13885308_13885371_13886202_13886259_13887292_13887446_13900398_13900644_13903149_13903217_13904909_13905067_13915049_13915191_13917824_13918043_13921156_13921388_13926527_13926718_13931895_13932033_13933962_13934062_13935290_13935431_13935688_13935787_13950054_13950212_13950598_13950671_13951625
42655	chr10	-	1299	6	NIC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	37	-24	intron_retention	FALSE	canonical	3	2552	junction_2	164.388077426558	7	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAAGGATACTTTGAT	5552	False	NA	NA	False	NA	NA	NA	79875592	79871808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79873219_79874272_79874448_79875416
42656	chr15	-	1518	10	NNC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	446.086217653322	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGCCCTGAAGTCCCTG	NA	False	NA	NA	False	NA	NA	NA	75952734	75942043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942597_75942830_75943445_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
42657	chr1	-	1521	12	ISM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	254	3669	16	2548	internal_fragment	FALSE	canonical	3	863	junction_11	58.2425819062603	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGGACAGACACAGGGGT	NA	False	NA	NA	False	NA	NA	NA	60137051	60119695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
42658	chr12	-	4043	8	NNC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	130.864004810727	1	236	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTCTTTCATGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	87490606	87472953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87476041_87478169_87478351_87480888_87480980_87485166_87485330_87487075_87487185_87488034_87488114_87488412_87488551_87490411
42659	chr1	+	3750	15	NNC	ENSMUSG00000026048.17	novel	3907	15	NA	NA	9	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	38.3661202582887	1	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAATGTATAGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	44187077	44220331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218303_44218392_44219690
42660	chr6	+	5154	20	Antisense	novelGene_ENSMUSG00000091313.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	16	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAGACTGCCACACTAGT	NA	False	NA	NA	False	NA	NA	NA	39584328	39682666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_39587341_39591067_39591222_39592595_39592730_39600512_39600647_39604656_39604775_39605542_39605590_39616523_39616700_39617383_39617468_39620031_39620152_39621171_39621314_39625382_39625420_39628537_39628698_39637805_39637926_39638938_39639083_39641933_39642041_39643179_39643280_39654307_39654407_39654505_39654575_39665176_39665277_39682569
42661	chr13	-	1464	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	2	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314327	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312091_34312322_34312515_34312854_34312966_34313228_34313338_34314159
42662	chr11	-	840	5	ISM	ENSMUSG00000020530.15	ENSMUST00000018547.9	2478	15	469	21415	25	-306	internal_fragment	FALSE	canonical	3	23	junction_1	238.040962861437	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTCCAGGGAACAGCCA	NA	False	NA	NA	False	NA	NA	NA	84761003	84745101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_84745207_84749265_84749365_84751370_84751625_84753063_84753145_84760702
42663	chr14	-	3885	18	NNC	ENSMUSG00000022095.10	novel	4033	17	NA	NA	15	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.8496142792766	69	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGCTGACTCTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	70837260	70820736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70821113_70821244_70822624_70822778_70822880_70823058_70823200_70823514_70823659_70823796_70823888_70824009_70824139_70824245_70824392_70824990_70825181_70825401_70825479_70825701_70825811_70826042_70826240_70826315_70826562_70827568_70827692_70827779_70827885_70829014_70829188_70831408_70831488_70837181
42664	chr7	+	1768	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	-3	2890	-3	0	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	485	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	NA	False	NA	NA	NA	139705566	139714247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
42665	chr4	+	2484	1	Antisense	novelGene_ENSMUSG00000029016.14_AS_novelGene_ENSMUSG00000086806.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGGTGGGATTTAATG	2263	False	NA	NA	False	NA	NA	NA	148088127	148090611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_148088100_148090600
42666	chr12	+	1574	4	FSM	ENSMUSG00000071379.3	ENSMUST00000071858.5	1526	4	-52	4	-52	-4	multi-exon	FALSE	canonical	3	71	junction_1	8.52447456836295	327	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	8572	False	NA	NA	False	NA	NA	NA	17740804	17841930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_17741048_17836147_17836550_17837545_17837652_17841107
42668	chr3	+	2620	21	Genic_Genomic	ENSMUSG00000027867.11	novel	7862	49	NA	NA	110575	19057	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	43	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGAGACCCGCCACTTCCG	NA	False	NA	NA	False	NA	NA	NA	100045498	100069695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_100046158_100046373_100046485_100049515_100049575_100049766_100049861_100050269_100050335_100050716_100050770_100051008_100051143_100051633_100051747_100051874_100051975_100052949_100053008_100053747_100053884_100054016_100054103_100055420_100055521_100057174_100057275_100058276_100058510_100059223_100059331_100060122_100060220_100060860_100060964_100061177_100061296_100068480_100068541_100069661
42669	chr6	-	1711	12	Antisense	novelGene_ENSMUSG00000030007.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTCCGCCTCGGGGCCG	6603	False	NA	NA	False	NA	NA	NA	85445369	85429070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_85429109_85436095_85436249_85436927_85437029_85438024_85438152_85438488_85438543_85439012_85439156_85441758_85441917_85442887_85443070_85443604_85443710_85444012_85444145_85444574_85444777_85445053
42670	chr7	-	1908	17	FSM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	-109	688	-82	-2	multi-exon	FALSE	canonical	3	21	junction_16	42.5708508694623	258	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTGTGCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	126183561	126171259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345
42671	chrX	-	1184	2	Antisense	novelGene_ENSMUSG00000084349.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGTGTCTTTATAGTG	2471	False	NA	NA	False	NA	NA	NA	13070086	13068784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13069004_13069121
42672	chr2	+	1530	1	Intergenic	novelGene_2805	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACTACATTGACAGCTAA	NA	False	NA	NA	False	NA	NA	NA	168858696	168860226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168858700_168860200
42673	chr8	+	1348	9	Antisense	novelGene_ENSMUSG00000008892.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCGCGACCTCGCTCCC	4655	False	NA	NA	False	NA	NA	NA	23067107	23083773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_23067618_23068057_23068116_23069006_23069158_23070354_23070586_23072099_23072154_23073601_23073752_23077567_23077618_23078740_23078811_23083699
42675	chr1	-	2735	21	NNC	ENSMUSG00000042699.12	novel	4616	28	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	34.5743763501238	10	25	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATTGATTGTGTCATT	NA	False	NA	NA	False	NA	NA	NA	153363397	153331511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_153331768_153338319_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
42676	chr3	+	2194	14	NNC	ENSMUSG00000028085.13	novel	3469	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	62.0754456024728	335	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGCCGTGGGTGCTT	NA	False	NA	NA	False	NA	NA	NA	85481433	85561467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_85481627_85483170_85483322_85497219_85497415_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
42677	chr6	-	823	1	FSM	ENSMUSG00000084319.4	ENSMUST00000121046.2	519	1	-99	-205	-99	205	mono-exon	FALSE	NA	NA	NA	NA	NA	44	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTCAGAATCACACCCA	NA	False	NA	NA	False	NA	NA	NA	99855394	99854571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_99854600_99855400
42678	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	235	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	NA	False	NA	NA	NA	75768309	75759055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
42679	chr10	+	1149	1	ISM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	8855	2	1265	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	34	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	4519	False	NA	NA	False	NA	NA	NA	79699115	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79699100_79700300
42680	chr17	-	1665	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	443	279	12	-277	multi-exon	FALSE	canonical	3	126	junction_3	5.45527267879434	64	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGGTGGGCACTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	27247540	27239062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
42682	chr15	+	4738	9	ISM	ENSMUSG00000022456.19	ENSMUST00000023095.14	4992	10	4176	6	-3118	-6	3prime_fragment	FALSE	canonical	3	32	junction_6	6.12372435695795	29	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAATGGCCTGGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	82163615	82178769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_82163808_82167259_82167389_82167877_82167960_82168572_82168711_82169987_82170106_82170637_82170734_82173395_82173496_82174604_82174657_82174938
42685	chr8	+	1975	13	Antisense	novelGene_ENSMUSG00000031696.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCCATATCTTTTAATTA	NA	False	NA	NA	False	NA	NA	NA	85988627	86014438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85988768_85989939_85990183_85990773_85990952_85997320_85997445_86000100_86000254_86001445_86001629_86005326_86005482_86005588_86005686_86007864_86007973_86008467_86008556_86010628_86010836_86012969_86013157_86014326
42686	chr7	+	2149	9	NIC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	1	389	intron_retention	FALSE	canonical	3	1130	junction_6	71.7459711412425	38	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGAGCTGTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	15832533	15851053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15848151_15849127_15849197_15849524_15849576_15850388
42689	chr4	-	2782	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	195	1152	-3	226	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	1	135	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGTACCACTTAGTATT	NA	False	NA	NA	False	NA	NA	NA	131939419	131913374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
42690	chr19	-	2237	16	FSM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	79	-249	-12	-238	multi-exon	FALSE	canonical	3	74	junction_15	11.5573930163049	183	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATTAAAGGTGTGGGGCA	NA	False	NA	NA	False	NA	NA	NA	5538351	5532610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
42691	chr4	-	3747	2	FSM	ENSMUSG00000086810.2	ENSMUST00000138077.2	3414	2	-316	-17	-316	17	multi-exon	FALSE	canonical	3	15	junction_1	0	39	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGAATAGTGATTTGTAA	NA	False	NA	NA	False	NA	NA	NA	154740091	154730193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_154733095_154739245
42692	chr11	+	2025	11	NNC	ENSMUSG00000020623.12	novel	2068	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	31.1070731506518	9	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGTGGCATAGTATTA	NA	False	NA	NA	False	NA	NA	NA	110289947	110404464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383843_110387156_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
42693	chr3	+	1780	4	FSM	ENSMUSG00000037661.15	ENSMUST00000194979.6	346	4	-36	-1398	7	0	multi-exon	FALSE	canonical	3	233	junction_2	25.3026129524645	183	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30910105	30951339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30910207_30931383_30931482_30944090_30944191_30949858
42697	chr11	-	1892	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	43.1225643434566	560	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	3882046	3867193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3881975
42698	chr8	+	2696	15	NIC	ENSMUSG00000036564.18	novel	3101	17	NA	NA	-5789	-9	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	7.54476436926662	45	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTAAGTCTACGTGTGT	NA	False	NA	NA	False	NA	NA	NA	96423875	96441571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_96423917_96426740_96426786_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
42699	chr4	-	1311	3	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	209	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224428	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220152_127220511_127220565_127224294
42701	chr4	-	1193	1	Intergenic	novelGene_1904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGCACATGCCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	98631587	98630394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_98630400_98631600
42702	chrX	+	1424	10	NIC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	-3	-3	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	130.820015835536	331	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTCGACTACCTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	47345735	47371327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47367243_47367438_47367544_47367645_47370938
42703	chr10	+	3779	9	Antisense	novelGene_ENSMUSG00000055531.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGTGGGGGCGGGGCGCC	NA	False	NA	NA	False	NA	NA	NA	117189288	117212875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117192033_117194897_117195055_117196347_117196459_117196759_117196863_117198020_117198093_117198879_117199026_117201985_117202090_117203683_117203893_117212742
42704	chr19	-	939	2	NNC	ENSMUSG00000035171.10	novel	541	6	NA	NA	-13	-15286	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCGCGAACCATCTCAAGG	499	False	NA	NA	False	NA	NA	NA	21630294	21607914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_21608530_21629970
42705	chr3	-	3271	9	Intergenic	novelGene_3125	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	350	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGAGAAGGGACCACAACAG	NA	False	NA	NA	False	NA	NA	NA	57742842	57643520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_57643620_57671675_57671804_57676460_57676540_57686801_57686928_57703616_57703707_57709867_57709958_57714441_57714548_57727926_57728021_57740383
42706	chr14	+	1156	14	NIC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_11	663.831241476148	1383	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGCGTGTGTTCGAGAGA	NA	False	NA	NA	False	NA	NA	NA	79825253	79866415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79859543_79859652_79862280_79862463_79866291
42707	chr4	+	2995	3	Antisense	novelGene_ENSMUSG00000039740.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTACTGAAAGCCGAGCCA	NA	False	NA	NA	False	NA	NA	NA	47469840	47474360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_47471597_47471641_47472456_47473935
42708	chr12	+	2917	7	NNC	ENSMUSG00000020605.10	novel	2959	7	NA	NA	7	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	54.5394862054599	2	162	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTGTGATAAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	8363438	8393802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8363498_8367784_8367951_8371518_8371714_8373869_8374102_8386237_8386396_8387632_8387769_8391831
42709	chr7	-	1827	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-65	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	621.456675883364	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTGAATAAAACTTTTCC	NA	False	NA	NA	False	NA	NA	NA	99002321	98994666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98994872_98995063_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
42710	chr17	-	3313	12	NNC	ENSMUSG00000023931.6	novel	2661	13	NA	NA	-2364	-4	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_3	7.6763024845762	35	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTTCTGGACTTAAATT	NA	False	NA	NA	False	NA	NA	NA	53772713	53706179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53772533
42711	chr5	+	3236	2	Intergenic	novelGene_767	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGTGGGCATTTTACCA	NA	False	NA	NA	False	NA	NA	NA	104719645	104726274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104721815_104725207
42712	chr15	-	1292	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	6	0	-3	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	4229	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	2721	False	NA	NA	False	NA	NA	NA	77813200	77799246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
42713	chr7	-	787	3	FSM	ENSMUSG00000078768.3	ENSMUST00000182248.2	382	3	-43	-362	21	362	multi-exon	FALSE	canonical	3	124	junction_2	0.5	8	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCAGGGCTATAGTGGG	9944	False	NA	NA	False	NA	NA	NA	29789931	29780134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29780643_29786524_29786585_29789712
42714	chr11	-	1927	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	2	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	3	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAACCATCACTGATGT	6425	False	NA	NA	False	NA	NA	NA	102076053	102053335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054477_102054723_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
42715	chr10	+	2494	10	NNC	ENSMUSG00000019864.15	novel	2981	9	NA	NA	-19	-452	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	49.3400896274464	1	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCCATCTTATGTTAATGT	NA	False	NA	NA	False	NA	NA	NA	43777783	43823406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_43778424_43778477_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
42716	chr10	+	2308	12	FSM	ENSMUSG00000020111.16	ENSMUST00000165563.8	2442	12	127	7	5	2	multi-exon	FALSE	canonical	2	105	junction_7	32.1836157690049	371	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCAAGAGCTCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	59538425	59699947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000
42719	chrX	-	771	1	NIC	ENSMUSG00000001128.8	novel	1636	9	NA	NA	-483	-1676	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGTCCGCCAGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	20794336	20793565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_20793600_20794300
42720	chr6	-	671	1	Intergenic	novelGene_4186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAACCTGGGCTGGTGAG	NA	False	NA	NA	False	NA	NA	NA	71855705	71855034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_71855000_71855700
42721	chr8	+	1927	15	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	446.73233665389	2	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGGACTAGACATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	107620287	107649717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632856_107637612_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644314_107645251_107645438_107648803_107648915_107649496
42723	chr11	-	2128	3	NIC	ENSMUSG00000020857.12	novel	1012	5	NA	NA	-93	-1138	intron_retention	FALSE	canonical	3	5665	junction_2	525	568	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGGACTGGCTCTAAAC	NA	False	NA	NA	False	NA	NA	NA	93846702	93841780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_93843728_93846320_93846451_93846651
42724	chr9	-	2892	2	FSM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	-91	3593	-91	2295	multi-exon	FALSE	canonical	3	250	junction_1	0	161	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGGTGGTTATGTGTG	8003	False	NA	NA	False	NA	NA	NA	20888168	20877249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20879867_20887893
42725	chr2	+	4352	19	Antisense	novelGene_ENSMUSG00002076855.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	108	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCCGGTGCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	33025164	33261442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_33027718_33031002_33031098_33033054_33033162_33033311_33033412_33035418_33035516_33036581_33036666_33045299_33045351_33048920_33049048_33058191_33058259_33062427_33062524_33064422_33064566_33150493_33150617_33163572_33163666_33166157_33166250_33174838_33174919_33214662_33214716_33226524_33226632_33230723_33230848_33261282
42726	chr19	-	1574	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	82	5	-16	0	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	4167	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTCTGGAACTTTGC	6508	False	NA	NA	False	NA	NA	NA	4062724	4057501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
42727	chr11	-	2321	2	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	2791	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	109	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGCACATGACAAAATAAAA	2656	False	NA	NA	False	NA	NA	NA	96710760	96708290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96709593_96709741
42728	chr2	-	1955	14	NIC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	337	-14	intron_retention	FALSE	canonical	3	336	junction_13	23.8662446383191	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCACCCCCCTCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	164699125	164681451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
42729	chr8	-	1179	1	NIC	ENSMUSG00000031586.18	novel	2466	8	NA	NA	908	8811	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCACTTCCCAGGGCTGGA	NA	False	NA	NA	False	NA	NA	NA	34286334	34285155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_34285200_34286300
42730	chr5	-	3667	5	NIC	ENSMUSG00000035505.15	novel	1333	6	NA	NA	7	0	intron_retention	FALSE	canonical	3	158	junction_2	54.9795416495991	8	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	NA	False	NA	NA	NA	90371853	90362582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_90365484_90366770_90366893_90367218_90367383_90370089_90370191_90371474
42731	chr7	-	1475	8	NIC	ENSMUSG00000030697.8	novel	1359	9	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	916.339367666092	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5212	False	NA	NA	False	NA	NA	NA	126391526	126385037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388307_126391232
42732	chr10	+	2260	9	NNC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	76	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	142.732649996418	1	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCTTATAAAAATTATG	NA	False	NA	NA	False	NA	NA	NA	44144486	44240277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_44144581_44162031_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195459_44195551_44222103_44222163_44222952_44223071_44238911
42735	chr17	+	2278	14	FSM	ENSMUSG00000019487.12	ENSMUST00000019631.11	2224	14	-22	-32	5	32	multi-exon	FALSE	canonical	3	302	junction_12	30.2353686068634	367	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCGCTCTGGCAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	57556459	57570697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
42737	chr11	+	2498	11	NNC	ENSMUSG00000059248.14	novel	2932	10	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	207.63720764834	1	104	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117223245	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248_117252165_117252512
42739	chr9	-	4021	5	NNC	ENSMUSG00000020258.17	novel	4081	5	NA	NA	-1987	-3	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	3.53553390593274	30	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCACATGTGTCTTACT	3468	False	NA	NA	False	NA	NA	NA	106037324	106030058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_106033307_106033607_106033784_106034343_106034496_106034687_106035104_106037295
42740	chr11	-	2624	5	NIC	ENSMUSG00000047342.18	novel	679	6	NA	NA	0	-267	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	17.8535710713571	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTTTCATGCTTGCTC	NA	False	NA	NA	False	NA	NA	NA	62680243	62669479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_62671726_62674497_62674588_62678784_62678871_62679755_62679916_62680201
42741	chr2	+	1921	16	NNC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	21	1067	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	142.1037179903	40	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGGTGTAATACTGTG	NA	False	NA	NA	False	NA	NA	NA	69553218	69580959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69553302_69561834_69561925_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615_69580078_69580906
42742	chr10	-	1717	8	NIC	ENSMUSG00000020069.17	novel	1633	9	NA	NA	23	0	intron_retention	FALSE	canonical	3	177	junction_6	114.573031695232	38	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5804	False	NA	NA	False	NA	NA	NA	62859650	62851206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62854005_62855171_62855307_62859498
42743	chr19	+	1925	11	NNC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-39	-9	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	54.6512579910106	3	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTCACTAGTGTTGAT	6985	False	NA	NA	False	NA	NA	NA	8719212	8732997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8719486_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
42744	chr9	+	3281	8	Antisense	novelGene_ENSMUSG00000111808.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	7	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCCGGACCGCCAAAGC	NA	False	NA	NA	False	NA	NA	NA	22188043	22218973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_22190576_22191747_22191854_22194461_22194559_22195313_22195436_22201828_22201942_22209714_22209805_22216806_22216899_22218844
42747	chr2	-	3316	14	NNC	ENSMUSG00000045624.16	novel	3396	14	NA	NA	24	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	145.644375187196	1	183	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGTGAAATGAAATTACCC	7001	False	NA	NA	False	NA	NA	NA	140012460	139961816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009723_140010376_140012406
42748	chr6	+	2749	5	FSM	ENSMUSG00000030208.16	ENSMUST00000032330.16	2721	5	-28	0	-28	0	multi-exon	FALSE	canonical	3	40	junction_2	1.6393596310755	101	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGACTGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	135339900	135360171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_135340101_135354175_135354287_135356898_135356996_135357098_135357240_135357971
42749	chr4	+	2850	3	ISM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	64488	7170	-490	1230	3prime_fragment	FALSE	canonical	3	63	junction_1	1.5	1	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAATTAAAGCCCCAATG	NA	False	NA	NA	False	NA	NA	NA	59690698	59754269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_59691339_59737561_59737735_59752232
42750	chrX	+	1936	4	NNC	ENSMUSG00000002014.13	novel	619	4	NA	NA	2	-2	intron_retention	FALSE	canonical	3	48	junction_2	630.368322667171	2	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATGAGTACATTCAAGAC	5468	False	NA	NA	False	NA	NA	NA	72830669	72834415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72830913_72832440_72832560_72832685_72833481_72833636
42751	chr4	+	2823	4	NNC	ENSMUSG00000028709.4	novel	2884	4	NA	NA	2357	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.9443825784929	4	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCAACCACTGGTGGGA	NA	False	NA	NA	False	NA	NA	NA	115688211	115693374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115688309_115688419_115688887_115690829_115691033_115691318
42752	chr2	+	2419	14	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-22	-6	intron_retention	FALSE	canonical	3	502	junction_11	50.824794769026	1	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCAGATATTTTACTCA	NA	False	NA	NA	False	NA	NA	NA	174257621	174269289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
42754	chr14	+	1199	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-18	-125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTTCCCAGTAGGGGTTT	6573	False	NA	NA	False	NA	NA	NA	76741951	76745077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744205_76744605
42755	chr2	+	2397	15	FSM	ENSMUSG00000027075.17	ENSMUST00000111624.8	2556	15	159	0	159	0	multi-exon	FALSE	canonical	3	14	junction_1	20.7551321413303	20	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	466	False	NA	NA	False	NA	NA	NA	84670701	84693925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_84670839_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
42756	chrX	+	1220	6	Antisense	novelGene_ENSMUSG00000057836.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGTAGAGATACCGGGAA	NA	False	NA	NA	False	NA	NA	NA	72130058	72138690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72130791_72130883_72130967_72132994_72133105_72134464_72134567_72137804_72137861_72138553
42757	chr17	-	1744	5	ISM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	8557	7929	-1747	1	3prime_fragment	FALSE	canonical	3	2881	junction_3	114.272426682905	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTCTGGGCAGCAAGT	NA	False	NA	NA	False	NA	NA	NA	30823076	30811838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993
42758	chr10	+	2367	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	-26	6	-26	-6	multi-exon	FALSE	canonical	0	0	junction_2	40.1875602643405	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGGGCTTTTCTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	76869019	76886259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
42759	chr2	+	2523	8	NNC	ENSMUSG00000028640.12	novel	2724	7	NA	NA	-50	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	290.451794447821	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAAAGTCTGGTTCTGA	NA	False	NA	NA	False	NA	NA	NA	172392633	172400534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_172392804_172393460_172393636_172393688_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
42760	chr5	-	2982	8	NIC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	17	473	intron_retention	FALSE	canonical	3	1613	junction_4	128.202804897839	1	117	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGGGCTGTCTACCTG	NA	False	NA	NA	False	NA	NA	NA	117527070	117517208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_117517972_117518831_117518887_117519900_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
42761	chr3	+	1733	3	NIC	ENSMUSG00000019710.14	novel	1234	5	NA	NA	-215	-231	intron_retention	FALSE	canonical	3	982	junction_1	35	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCGTTGTCCACACTAC	NA	False	NA	NA	False	NA	NA	NA	87828700	87830738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_87829534_87829694_87830373_87830516
42763	chr2	-	3278	6	ISM	ENSMUSG00000074994.7	ENSMUST00000117237.2	8973	12	27895	15185	27895	-15185	internal_fragment	FALSE	canonical	3	39	junction_1	22.5920339943087	48	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTTATTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	104619146	104600324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_104600526_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864
42765	chr11	-	1371	8	NIC	ENSMUSG00000020457.14	novel	1546	9	NA	NA	-3	-32	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	666.583705722465	25	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGGTGGGCCCGCTGGC	NA	False	NA	NA	False	NA	NA	NA	3216418	3199938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_3200366_3202159_3202283_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
42766	chr14	-	2839	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112211.9	2851	18	-2	14	0	-12	multi-exon	FALSE	canonical	3	7	junction_8	28.1631431086409	252	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGAATGGTACCAACCTG	5421	False	NA	NA	False	NA	NA	NA	30348167	30317326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324615_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
42768	chr13	-	5786	25	NIC	ENSMUSG00000034751.18	novel	7647	26	NA	NA	-6	-1635	combination_of_known_junctions	FALSE	canonical	1	4	junction_9	3.81312608702565	13	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTACCCGGTGCCC	4572	False	NA	NA	False	NA	NA	NA	103042589	102873144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_102875406_102875705_102875888_102878453_102878591_102887021_102887145_102887888_102888119_102895009_102895246_102895530_102895659_102897467_102897581_102897802_102897926_102904378_102904481_102906276_102906443_102907230_102907364_102908962_102909102_102910693_102910903_102917667_102917754_102919852_102919921_102923824_102923958_102925470_102925573_102930476_102930687_102932593_102932670_102934553_102934712_102941149_102941229_102947008_102947079_102990338_102990428_103042156
42769	chr1	-	290	1	FSM	ENSMUSG00000103653.2	ENSMUST00000195526.2	631	1	415	-74	415	74	mono-exon	FALSE	NA	NA	NA	NA	NA	26	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAACCAGCTA	NA	False	NA	NA	False	NA	NA	NA	191758335	191758045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_191758000_191758300
42770	chr9	+	2569	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	286.438365970762	1	116	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGTGTCTTCTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	77824696	77891799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887279_77889884_77890765_77890829_77891046_77891114
42771	chr15	+	1457	4	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	239	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	635.924698547102	68	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513468	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100515870_100517500
42772	chr10	+	2912	4	Antisense	novelGene_ENSMUSG00000112051.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	11.0855260988773	187	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAACCAAACAACCATCTCT	2318	False	NA	NA	False	NA	NA	NA	81814491	81827928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_81814609_81824424_81824552_81824751_81824813_81825321
42773	chr11	+	2123	16	NNC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	-3	-29	intron_retention	FALSE	canonical	0	0	junction_7	28.0377523270956	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATAAAAGCTGCTTGTT	8676	False	NA	NA	False	NA	NA	NA	83363933	83397540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83387987_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
42774	chr17	-	1903	7	FSM	ENSMUSG00000002289.17	ENSMUST00000002360.17	3308	7	255	1150	-32	8	multi-exon	FALSE	canonical	3	124	junction_1	6.14862224856557	300	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCTCTGTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34000549	33993873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999622_33999756_33999868_34000036
42775	chr11	-	1335	7	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	67	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	707.457046202964	1	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	17161501	17153197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_17154002_17154500_17154572_17158788_17158847_17159066_17159138_17159310_17159395_17160987_17161138_17161404
42776	chr2	-	3521	2	Antisense	novelGene_ENSMUSG00000085929.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	24	21	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTCCCCCGCACTTTCA	NA	False	NA	NA	False	NA	NA	NA	27436102	27430369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_27430575_27432786
42777	chr8	+	4085	7	NIC	ENSMUSG00000001482.16	novel	3127	12	NA	NA	7085	-123	intron_retention	FALSE	canonical	3	222	junction_6	32.2473082425323	1	209	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCATACCCCCAAATCTG	NA	False	NA	NA	False	NA	NA	NA	124181005	124189878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_124181110_124182152_124182318_124183144_124183273_124183409_124185171_124186255_124186397_124186555_124186666_124188202
42778	chr9	-	1495	7	Antisense	novelGene_ENSMUSG00000066705.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1196	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGCGGTGGGCGCGGCTTG	NA	False	NA	NA	False	NA	NA	NA	45307453	45281708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_45281783_45301279_45301345_45301933_45301970_45302073_45302150_45302858_45302886_45303979_45304022_45306278
42780	chr17	+	2809	4	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-1985	-121	intron_retention	FALSE	canonical	3	2277	junction_3	136.557680120893	2	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGAGATCCCAGACCCCA	9541	False	NA	NA	False	NA	NA	NA	56623040	56629218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56625385_56627161_56627283_56627396_56627543_56629020
42782	chr17	+	2907	9	NIC	ENSMUSG00000023952.14	novel	2929	12	NA	NA	877	-5	intron_retention	FALSE	canonical	3	41	junction_4	11.6833214455479	1	56	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACACTCTGCTTATTCT	NA	False	NA	NA	False	NA	NA	NA	46475120	46480289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46475305_46475650_46475760_46475911_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
42783	chr1	-	1787	9	NNC	ENSMUSG00000026047.14	novel	2359	10	NA	NA	-11	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	103.098254107429	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACTGCCTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	44157936	44146064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_44146265_44146924_44147033_44149985_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
42784	chr2	-	371	3	Antisense	novelGene_ENSMUSG00000043241.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCCCCTCCCCCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	5962397	5956303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_5956361_5957234_5957431_5962279
42785	chr9	+	1454	9	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	2	5	intron_retention	FALSE	canonical	3	687	junction_4	68.1651257975807	1300	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGTCTGTCTTCTT	2371	False	NA	NA	False	NA	NA	NA	21323134	21331575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
42787	chr11	+	1335	4	NNC	ENSMUSG00000020843.16	novel	2817	4	NA	NA	-1	-1850	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	118.592673560479	19	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGACCCAAGGCCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	76298015	76303058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_76298269_76300467_76300665_76301952_76302242_76302462
42788	chr7	+	1857	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	274	2361	-56	1091	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	2	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTTCCAGTGATAGGTA	NA	False	NA	NA	False	NA	NA	NA	83541481	83548379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
42789	chr9	+	1499	12	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	382	0	123	0	3prime_fragment	FALSE	canonical	3	5755	junction_2	199.673576594608	1	53	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108766082	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
42790	chr17	-	2294	8	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	-14	-1	intron_retention	FALSE	canonical	3	585	junction_1	46.4533999546528	1	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGTCCCATCTTCAT	NA	False	NA	NA	False	NA	NA	NA	56343590	56323750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325963_56326039_56326460_56326925_56326999_56327122_56327192_56343414
42791	chr6	-	1123	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	105	0	105	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471649	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
42793	chr15	-	960	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4701.41214822738	478	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	158	False	NA	NA	False	NA	NA	NA	98832319	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829449_98830100_98830444_98830572_98830722_98830853_98831077_98832213
42794	chr5	+	3617	4	NIC	ENSMUSG00000015880.14	novel	3975	14	NA	NA	1577	-3	intron_retention	FALSE	canonical	3	566	junction_2	16.739839372653	15	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCCTATACTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	45850968	45857466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45851269_45852995_45853158_45853374_45856253_45857189
42795	chr5	+	2779	6	ISM	ENSMUSG00000034663.14	ENSMUST00000035635.10	7387	16	63765	3102	63765	-3102	3prime_fragment	TRUE	canonical	0	0	junction_3	4.62168800331654	11	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACAATGTGGAATGCC	NA	False	NA	NA	False	NA	NA	NA	97209312	97236624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_97209516_97211303_97211403_97212687_97212873_97216257_97216416_97222491_97222603_97234601
42796	chr5	+	522	1	ISM	ENSMUSG00000034663.14	ENSMUST00000035635.10	7387	16	93614	43	93614	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAATGCAATAAATCCCA	NA	False	NA	NA	False	NA	NA	NA	97239161	97239683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_97239200_97239700
42798	chr7	-	1673	12	NNC	ENSMUSG00000030491.17	novel	1620	12	NA	NA	16	13	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	137.361139499598	1196	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGAATTCTTGCTTCTA	NA	False	NA	NA	False	NA	NA	NA	35237154	35193052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35193363_35193610_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
42799	chr5	+	2425	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	0	-1	0	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	12	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTGAGGTGATGATCAT	NA	False	NA	NA	False	NA	NA	NA	31684338	31711382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
42800	chr1	-	4576	9	FSM	ENSMUSG00000026675.13	ENSMUST00000027989.13	4612	9	31	5	31	-5	multi-exon	TRUE	canonical	3	45	junction_1	8.48528137423857	34	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGTTTTAGACTCAGTT	NA	False	NA	NA	False	NA	NA	NA	169796779	169777108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_169780704_169783503_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
42802	chr16	+	4288	8	FSM	ENSMUSG00000022885.17	ENSMUST00000023601.14	4506	8	211	7	211	-7	multi-exon	FALSE	canonical	2	4	junction_2	3.46410161513775	23	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAATCTGCTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	23043700	23179091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_23043980_23075708_23075852_23136313_23136449_23139782_23140429_23147091_23147190_23173615_23173715_23174958_23175134_23176378
42803	chr19	-	3452	31	NNC	ENSMUSG00000025159.9	novel	6607	31	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	101.968453727393	1	158	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCACACTCACGTGTACTG	NA	False	NA	NA	False	NA	NA	NA	41969566	41932644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41933020_41933095_41933197_41933770_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938203_41938277_41938419_41938523_41939190_41939293_41940845_41941002_41942107_41942258_41942359_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944943_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951510_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
42804	chr2	+	2329	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	-750	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	581.797090201272	2	80	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGTACTTTGCCCCCC	651	False	NA	NA	False	NA	NA	NA	26279357	26286384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283000_26283097_26283179_26283308_26283400_26283529_26283593_26285036_26285182_26285430
42805	chr2	-	2902	17	NIC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5	403	combination_of_known_junctions	FALSE	canonical	2	3	junction_16	36.5893064125299	1	95	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCACACCAAAATGTCTGC	NA	False	NA	NA	False	NA	NA	NA	71178177	71104630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71174233_71174377_71178111
42806	chr4	-	1819	16	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	9503	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	90.3302582502428	1	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCCCTTTTCTCCTCTGT	NA	False	NA	NA	False	NA	NA	NA	108955725	108919294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925555_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699
42807	chr15	-	2622	8	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-7	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	166.514692616426	1	86	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACATTAAAATGTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	79855327	79800028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79801384_79801692_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
42808	chr6	-	1756	6	NNC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	-2385	-9	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	451.986105981146	280	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTCCAGTCTTTCTTGA	3724	False	NA	NA	False	NA	NA	NA	82684731	82623690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82682163_82682295_82683088_82683236_82684707
42809	chr2	-	1831	12	NNC	ENSMUSG00000039536.17	novel	3569	12	NA	NA	68	50	intron_retention	FALSE	canonical	0	0	junction_7	83.3006106552479	1	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGCCCTGGTTGTGCTGGG	NA	False	NA	NA	False	NA	NA	NA	166838117	166791115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795262_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
42810	chr12	+	1928	13	FSM	ENSMUSG00000021222.10	ENSMUST00000223291.2	2005	13	61	16	-13	-11	multi-exon	FALSE	canonical	3	216	junction_8	22.5331545850898	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTCTTCAATTTTCTA	NA	False	NA	NA	False	NA	NA	NA	83572834	83588678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
42811	chr3	-	1568	11	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	392.189036052769	9	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	143	False	NA	NA	False	NA	NA	NA	153650118	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628640_153631301_153631364_153635909_153635995_153638652_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
42812	chr18	+	2282	19	NNC	ENSMUSG00000024410.16	novel	2297	19	NA	NA	5	-3	intron_retention	FALSE	non_canonical	0	0	junction_11	72.2569147445078	16	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAAAAAAATGTAATAAAG	NA	False	NA	NA	False	NA	NA	NA	12301800	12323021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317320_12317961_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
42813	chr19	+	2110	13	NNC	ENSMUSG00000025036.8	novel	3205	12	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	14.6657196663966	149	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGTCTGCAAACTAAGCT	NA	False	NA	NA	False	NA	NA	NA	46561816	46585340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110_46583769_46584858
42815	chr16	-	992	1	Antisense	novelGene_ENSMUSG00000055447.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCATCAAATAGAATTCC	NA	False	NA	NA	False	NA	NA	NA	49733658	49732666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_49732700_49733700
42817	chr17	-	982	4	NIC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	69	4	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	486.85749683272	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTACTGTGTTGTGCTCT	NA	False	NA	NA	False	NA	NA	NA	13135163	13130231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_13130637_13132656_13132889_13134524_13134712_13135005
42818	chr14	+	2988	12	NIC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_6	52.2316834912544	6	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	52122391	52129325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
42819	chr1	+	2205	20	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	90	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.429541203041	1	91	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTCTGATTGGTATAT	412	False	NA	NA	False	NA	NA	NA	72346675	72434090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346719_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379202_72385440_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
42820	chrX	-	2627	4	Antisense	novelGene_ENSMUSG00000031156.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	219	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGTAACCACCTGTCCAA	5538	False	NA	NA	False	NA	NA	NA	7760266	7750271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_7750672_7751986_7752170_7755846_7755997_7758372
42821	chr1	-	2437	10	FSM	ENSMUSG00000033159.15	ENSMUST00000041213.12	2429	10	-13	5	1	-5	multi-exon	FALSE	canonical	3	17	junction_9	47.8820567438857	267	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCATGGCCTGGCCTTTT	9295	False	NA	NA	False	NA	NA	NA	75119354	75112419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701_75119205_75119286
42822	chr7	-	3294	3	FSM	ENSMUSG00000035239.7	ENSMUST00000036331.7	3341	3	47	0	47	0	multi-exon	FALSE	canonical	2	4	junction_1	0	111	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTGGAGTGAGTTAGAT	6072	False	NA	NA	False	NA	NA	NA	99477577	99460645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99463515_99472528_99472741_99477364
42823	chr1	+	4277	3	ISM	ENSMUSG00000043019.13	ENSMUST00000059498.12	6327	20	52902	-255	52816	255	3prime_fragment	FALSE	canonical	3	114	junction_2	1.5	68	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTCTTTTAATATTATCA	6022	False	NA	NA	False	NA	NA	NA	151684026	151698057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_151684121_151687269_151687456_151694060
42824	chr6	-	1534	1	FSM	ENSMUSG00000096403.3	ENSMUST00000178598.3	843	1	12	-703	12	703	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAGAATGCAAAAAAAAAA	63	False	NA	NA	False	NA	NA	NA	7983371	7981837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7981800_7983400
42826	chr11	+	1647	1	ISM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	20543	2	3345	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGCCCTCCATTATCCTCA	9399	False	NA	NA	False	NA	NA	NA	4130892	4132539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_4130900_4132500
42827	chr13	+	2122	20	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	9	36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	246.171145114493	1	79	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAAGCTGCCCTGT	1318	False	NA	NA	False	NA	NA	NA	59733216	59782602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775724_59778394_59778518_59780761_59780843_59782231
42828	chr10	+	4093	2	Antisense	novelGene_ENSMUSG00000004359.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	71	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGGACAAACTCCTCTG	NA	False	NA	NA	False	NA	NA	NA	88516715	88520855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_88520292_88520338
42830	chr11	-	819	1	NIC	ENSMUSG00000017146.13	novel	6572	23	NA	NA	-852	4299	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGAATCAGCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	101399856	101399037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101399000_101399900
42832	chr5	+	2709	13	NNC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	32.7849686085966	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCATGTCTGCAGTTAC	NA	False	NA	NA	False	NA	NA	NA	143846842	143868260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143846898_143850395_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
42833	chr3	+	1557	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	0	-317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1523.56000933367	4	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAAAAAACTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	89986960	90007886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994759_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997324_90007010
42834	chr11	+	964	7	FSM	ENSMUSG00000025792.10	ENSMUST00000123373.2	813	7	0	-151	0	151	multi-exon	FALSE	canonical	3	78	junction_5	9.51606828241346	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAACATATTCACCCACTT	NA	False	NA	NA	False	NA	NA	NA	120382740	120387893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461
42835	chr11	-	2165	6	NNC	ENSMUSG00000000782.17	novel	813	9	NA	NA	17099	85	at_least_one_novel_splicesite	FALSE	canonical	3	108	junction_1	55.7422640372635	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	52148605	52143112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_52144790_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510
42837	chr4	-	2303	5	NNC	ENSMUSG00000051517.15	novel	775	5	NA	NA	55	-2	intron_retention	FALSE	canonical	0	0	junction_1	56.4490921096168	3	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAAAAGCCTTCCTGTCT	9193	False	NA	NA	False	NA	NA	NA	43499553	43496149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_43498030_43498581_43498705_43498895_43499017_43499242_43499338_43499469
42838	chr5	-	1988	16	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	68	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGCTACGCCCGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	33829512	33815925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816064_33818550_33818730_33818866_33818989_33821164_33821247_33821609_33821807_33821980_33822198_33824034_33824086_33824401_33824508_33825309_33825396_33825475_33825579_33826004_33826083_33826160_33826205_33826820_33826990_33828745_33828853_33829007_33829128_33829323
42839	chr9	+	3215	12	FSM	ENSMUSG00000032010.16	ENSMUST00000065461.9	2057	12	-8	-1150	-8	0	multi-exon	FALSE	canonical	3	22	junction_1	11.7473401244707	73	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGACGGTCTTGAT	2240	False	NA	NA	False	NA	NA	NA	43996227	44006924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_43996633_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
42840	chr12	+	1303	1	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	48	1429	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGCCACCCAGCTGC	NA	False	NA	NA	False	NA	NA	NA	109511328	109512631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109511300_109512600
42841	chr2	+	1554	8	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-44	-3	combination_of_known_junctions	FALSE	canonical	3	83	junction_7	905.559315268408	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATAGTATGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	130118175	130121224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
42842	chr16	-	2431	5	NNC	ENSMUSG00000117129.2	novel	699	2	NA	NA	-10257	29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	68	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGCCATGGTGACCGCGC	NA	False	NA	NA	False	NA	NA	NA	95959041	95946646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95946787_95953031_95953178_95954171_95954239_95955280_95955393_95957075
42844	chr12	+	2809	4	Intergenic	novelGene_4305	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_3	34.2150064542836	1	157	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGTCAATAAATGGTGAT	NA	False	NA	NA	False	NA	NA	NA	19116413	19127611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_19116514_19123371_19123499_19123700_19123762_19125090
42845	chr12	-	1209	2	Antisense	novelGene_ENSMUSG00000091905.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTATATTAAAATCTTAATG	NA	False	NA	NA	False	NA	NA	NA	64834466	64832966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_64833255_64833545
42846	chr13	-	3526	11	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-1	-8	intron_retention	FALSE	canonical	3	100	junction_7	14.9946657181812	8	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCCCACTTCTGGTTCA	NA	False	NA	NA	False	NA	NA	NA	74210419	74185759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
42847	chr11	-	2015	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	39	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1119.31890252758	1	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5240	False	NA	NA	False	NA	NA	NA	88846252	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824374_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834690_88835209_88835357_88837970_88838052_88843231_88843381_88846119
42849	chr1	-	3247	25	NIC	ENSMUSG00000026383.15	novel	6442	25	NA	NA	17	-133	combination_of_known_junctions	FALSE	canonical	2	7	junction_24	18.7778959151445	5	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCAGAAATGGGGAATGC	NA	False	NA	NA	False	NA	NA	NA	119576330	119475993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576146
42850	chr14	-	1285	10	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-19	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1539.24678549824	3	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACGATCGCTTGCAAC	NA	False	NA	NA	False	NA	NA	NA	63746217	63729814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730036_63730137_63730296_63731190_63731342_63731843_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746152
42851	chr2	+	2102	10	Intergenic	novelGene_2774	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACAATGAGGTAAGATCAA	4483	False	NA	NA	False	NA	NA	NA	165669069	165703519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_165669644_165669865_165670610_165676809_165676890_165679202_165679256_165680730_165680820_165681917_165682013_165684685_165684798_165687939_165688090_165693922_165694069_165703460
42852	chr1	-	2197	11	NNC	ENSMUSG00000090322.2	novel	490	3	NA	NA	21	6746	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	157	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGGCGGAGCCTCGGGT	2588	False	NA	NA	False	NA	NA	NA	91248802	91226067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_91226168_91228246_91228357_91230484_91230590_91232993_91233174_91236032_91236163_91236371_91236536_91237516_91237658_91244782_91244864_91245307_91245412_91246757_91246835_91247797
42853	chr15	+	1456	6	ISM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	8851	0	8851	0	3prime_fragment	FALSE	canonical	3	556	junction_1	62.5127187058762	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	6108	False	NA	NA	False	NA	NA	NA	85752997	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
42854	chr6	+	1630	8	NNC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	108.464420951042	481	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACGCAGTGAAGAGTG	2322	False	NA	NA	False	NA	NA	NA	113303946	113311143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113304324_113304622_113304724_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
42855	chr15	-	1845	12	NNC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	611.709837766105	1	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	NA	False	NA	NA	NA	75952749	75942030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942597_75942822_75943026_75943130_75943292_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
42856	chr3	-	3659	16	NIC	ENSMUSG00000027615.15	novel	4016	17	NA	NA	0	-14	intron_retention	FALSE	canonical	3	6	junction_3	13.8490272422129	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATGATGTTCAAATCT	NA	False	NA	NA	False	NA	NA	NA	20089466	20050344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_20051194_20056486_20056578_20057388_20057596_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
42857	chr10	+	1690	4	NIC	ENSMUSG00000020224.16	novel	1463	3	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	7.93025150224688	115	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	NA	False	NA	NA	NA	120063016	120067976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_120063455_120063878_120064109_120066314_120066468_120067107
42858	chr9	-	2512	6	ISM	ENSMUSG00000032217.14	ENSMUST00000113595.2	4735	15	60236	457	10728	-457	3prime_fragment	TRUE	canonical	3	68	junction_2	103.897256941654	4	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCTCTTGTTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	70350400	70333168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_70334390_70336833_70336962_70338212_70338309_70339218_70339312_70348036_70348164_70349553
42859	chr2	-	1826	14	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	311	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.474907815791	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	164699151	164681440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681759_164682259_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
42860	chr9	-	1707	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	24	-57	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	123.097936785376	2	3	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGTGTTCTCATTGCTT	NA	False	NA	NA	False	NA	NA	NA	103079304	103066345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103066696_103066841_103067621_103068267_103068323_103069475_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
42861	chr11	-	2038	4	FSM	ENSMUSG00000051232.14	ENSMUST00000135946.8	501	4	-86	-1451	41	-2	multi-exon	FALSE	canonical	3	479	junction_3	27.8248490062789	6	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATCTTTGGTCTTA	1672	False	NA	NA	False	NA	NA	NA	78402957	78397882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78399522_78400550_78400641_78401173_78401248_78402722
42862	chr1	+	2506	4	NNC	ENSMUSG00000042207.18	novel	8714	27	NA	NA	4541	1704	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	462.931480411038	2	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACCACCGAGTTCCC	NA	False	NA	NA	False	NA	NA	NA	134555078	134560964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134555119_134556335_134556491_134558170_134558492_134558974
42863	chr10	+	1944	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	183	0	-9	0	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	364	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7210	False	NA	NA	False	NA	NA	NA	80165969	80172275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
42864	chr9	-	1279	11	FSM	ENSMUSG00000061559.16	ENSMUST00000121204.8	1290	11	16	-5	-1	0	multi-exon	FALSE	canonical	3	544	junction_10	185.351584832717	2969	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5437	False	NA	NA	False	NA	NA	NA	54641787	54624442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
42865	chr4	-	2243	20	NNC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	-6	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	152.959919070668	1	93	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCCTTTATATGTTATC	-11	True	NA	NA	False	NA	NA	NA	34614919	34570819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578019_34579736_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
42866	chr5	+	873	1	FSM	ENSMUSG00000106926.2	ENSMUST00000200912.2	799	1	-4	-70	-4	70	mono-exon	FALSE	NA	NA	NA	NA	NA	8	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAATTACATAGAATC	NA	False	NA	NA	False	NA	NA	NA	82484693	82485566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_82484700_82485600
42867	chr6	-	1583	8	NNC	ENSMUSG00000029817.12	novel	1799	8	NA	NA	11167	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	218.72077064194	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAATTTGAAAATGGGATT	6832	False	NA	12	True	NA	NA	NA	49229777	49220870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49221666_49221801_49221870_49222409_49222495_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229741
42868	chr2	+	3309	1	Intergenic	novelGene_2796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	78	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTCCAGGTCCTCCCAG	NA	False	NA	NA	False	NA	NA	NA	168800619	168803928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168800600_168803900
42869	chr7	-	2451	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	12	4	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGACCAACTTTATGAACAC	NA	False	NA	NA	False	NA	NA	NA	112968587	112914845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
42870	chr14	-	2286	4	NIC	ENSMUSG00000002320.16	novel	2382	5	NA	NA	-6	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	166.85589258066	5	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAAGGATCCTGTCGT	5200	False	NA	NA	False	NA	NA	NA	55880803	55873432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55874070_55875315_55875590_55878423_55879046_55880050
42871	chr4	-	1255	9	NNC	ENSMUSG00000028692.15	novel	1420	9	NA	NA	53	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	567.427404497703	89	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGCCATTGAAGTGTA	NA	False	NA	NA	False	NA	NA	NA	116508824	116493726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116493867_116494958_116495046_116495172_116495246_116496249_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
42872	chr4	-	1566	10	NNC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.0609529557146	61	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	NA	False	NA	NA	NA	147952979	147945247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147945506_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
42873	chr15	+	1978	5	Antisense	novelGene_ENSMUSG00000036678.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCCAGCCTGGTCTACA	9056	False	NA	NA	False	NA	NA	NA	102252548	102256806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_102252668_102254011_102254399_102254924_102254969_102255112_102255207_102255472
42874	chr15	+	846	1	Antisense	novelGene_ENSMUSG00000036678.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGAATCGACAGGCTCCC	NA	False	NA	NA	False	NA	NA	NA	102258226	102259072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_102258200_102259100
42876	chr5	-	1508	7	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	-45	-464	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	226.213026444839	1194	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTGTGAACTCTGAGG	NA	False	NA	NA	False	NA	NA	NA	121045629	121034782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121035088_121035242_121035312_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
42877	chr15	-	937	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4701.41214822738	483	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTTTGTTTCTGGATAC	158	False	NA	NA	False	NA	NA	NA	98832319	98829310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829443_98830116_98830444_98830572_98830722_98830853_98831077_98832213
42878	chr8	-	3607	26	NNC	ENSMUSG00000039509.9	novel	5808	26	NA	NA	-12	-2180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	115.757677931099	1	116	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTAGGTCTGGATCAAC	NA	False	NA	NA	False	NA	NA	NA	124676016	124626041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_124626250_124629337_124629427_124631290_124631353_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644247_124645495_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
42879	chr6	-	2682	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	969	0	-969	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	83	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAATGGTTAGGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	127086513	127063047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
42880	chr10	+	2476	14	NIC	ENSMUSG00000038010.10	novel	2750	4	NA	NA	9	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	23.4656995049037	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAATATAGTAGAGTCCCT	1209	False	NA	NA	False	NA	NA	NA	58334035	58412061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_58334498_58334990_58335036_58335183_58335242_58343342_58343464_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58397722_58397900_58409410_58409550_58411510
42881	chr6	-	1249	5	ISM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	6334	260	321	-260	3prime_fragment	FALSE	canonical	3	2445	junction_1	123.51998826101	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGAGGCCTATTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	83288254	83282932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191
42882	chr9	-	1878	15	NNC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	9	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.652201846919	4	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACAGGACTGGGCATGG	NA	False	NA	NA	False	NA	NA	NA	66032070	65995419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_65995747_65996386_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
42884	chr17	+	845	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	310	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTTGTTTTCCTTCAGT	3346	False	NA	NA	False	NA	NA	NA	35817224	35821674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821245_35821456
42885	chr1	+	1580	11	NNC	ENSMUSG00000026617.17	novel	1226	10	NA	NA	-21	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	89.3647022039463	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAAGCTGGGTAATTGC	NA	False	NA	NA	False	NA	NA	NA	185064324	185089962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674_185088964_185089637
42886	chr5	+	2807	15	ISM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	2202	906	2182	2	intron_retention	FALSE	canonical	3	53	junction_7	14.8105381676807	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGGTGGCACATGCCT	NA	False	NA	NA	False	NA	NA	NA	142452010	142463559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651
42887	chr2	+	3093	19	NNC	ENSMUSG00000070544.7	novel	3856	21	NA	NA	72	-333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	160.859084486169	1	123	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCACAGGTCAATAAATTT	NA	False	NA	NA	False	NA	NA	NA	160487971	160564351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544737_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557031_160557632_160557748_160559306_160559425_160563371
42888	chr12	+	1319	7	NNC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	225	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	706.066490416369	1	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80993374	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80993495_80994084_80994156_80994269_80994373_80994577_80994640_80995868_80995943_80996267_80996379_80996493
42889	chr6	-	2249	18	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-47	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.190316741869	1	72	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAGGAGCTGTTGGACG	3559	False	NA	NA	False	NA	NA	NA	125168500	125148815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125148886_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
42890	chr15	-	969	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	12734.6566764348	8	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	3572	False	NA	NA	False	NA	NA	NA	79967553	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79962945_79963935_79964052_79964566_79964616_79965166_79965233_79965815_79965985_79966590_79966784_79967524
42891	chr19	-	775	3	NIC	ENSMUSG00000079478.10	novel	705	4	NA	NA	-10	-20	intron_retention	FALSE	canonical	3	476	junction_2	13.5	1436	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAACAGTTTTTCCTCCG	NA	False	NA	NA	False	NA	NA	NA	5781737	5780354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5780741_5781268_5781624_5781703
42893	chr15	-	2632	4	NNC	ENSMUSG00000023755.11	novel	1604	8	NA	NA	20	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	102.779159149876	18	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTGTGTCTGGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	98779195	98775659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98776179_98776330_98777197_98777285_98777726_98778388
42894	chr6	+	1179	4	ISM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	38	12136	-12	-2305	5prime_fragment	FALSE	canonical	3	70	junction_1	2.05480466765633	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAACATAGATACTGTT	NA	False	NA	NA	False	NA	NA	NA	49013586	49022980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_49013727_49019700_49019854_49020930_49021075_49022238
42896	chrX	-	3151	20	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	30	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_19	17.6732422125854	3	36	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACATTTGTGTTTATATG	NA	False	NA	NA	False	NA	NA	NA	134985961	134972851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134982051_134985845
42897	chr2	-	2982	16	NNC	ENSMUSG00000040272.15	novel	3950	15	NA	NA	2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9.08087122594645	68	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTAGTGTCATTGCTATG	NA	False	NA	NA	False	NA	NA	NA	93680282	93663812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_93664702_93665650_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678535_93680105
42899	chrX	+	2340	8	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	-10	32051	-10	8454	5prime_fragment	FALSE	canonical	3	421	junction_5	81.1237402027902	2	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTAGAACAAGTGGAAGG	NA	False	NA	NA	False	NA	NA	NA	158315704	158343339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833
42900	chr2	-	1792	11	NNC	ENSMUSG00000017707.10	novel	3683	10	NA	NA	31	-1389	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.952253886333	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGTTTGTGTATTTG	NA	False	NA	NA	False	NA	NA	NA	163487014	163466580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163466703_163467167_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
42901	chr4	+	2997	17	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	-6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	145.629546602844	1	149	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAAAGAACTGGTATG	5266	False	NA	NA	False	NA	NA	NA	108436644	108472021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470340_108471477
42902	chr13	+	2924	5	NIC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	-47	-25	intron_retention	FALSE	canonical	3	1274	junction_1	107.655410918356	8	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATATTTTGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	43551818	43555445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_43552135_43552210_43554411_43554772_43554895_43554975_43555054_43555237
42903	chr10	+	3025	4	NNC	ENSMUSG00000060935.7	novel	1200	4	NA	NA	40	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	85.985786939212	6	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAAGATGGAATGTTTCA	NA	False	NA	NA	False	NA	NA	NA	84938646	84953444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_84938862_84946662_84946730_84950271_84951009_84951438
42904	chr17	-	1796	2	FSM	ENSMUSG00000024177.10	ENSMUST00000150280.3	995	2	11	-812	-1	-647	multi-exon	FALSE	canonical	3	319	junction_1	0	65	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTGTGTGTGCATATG	NA	False	NA	NA	False	NA	NA	NA	26314448	26311558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26313245_26314338
42905	chr14	-	1448	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	29	0	29	0	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	688	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	NA	False	NA	NA	NA	55983118	55976476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
42906	chr19	-	1479	9	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	467.266770030782	27	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGCTTGTCTGGAACTT	6528	False	NA	NA	False	NA	NA	NA	4062704	4057504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4057666_4057769_4057926_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
42907	chr9	+	1590	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1704.28320506175	1	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108765760	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776545_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
42909	chr11	+	1897	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-10	4	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	39.9666527661916	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTGAGTATTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	51153966	51172597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
42910	chr2	-	1920	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	43	650	8	96	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	1	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGACTACATTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	103315462	103284843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
42911	chr19	-	2896	16	FSM	ENSMUSG00000024862.17	ENSMUST00000116563.8	3169	16	273	0	10	0	multi-exon	FALSE	canonical	3	42	junction_15	16.0036107036992	162	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	NA	False	NA	NA	NA	5168315	5157773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167461_5168149
42912	chr3	+	1387	10	NNC	ENSMUSG00000028049.16	novel	1489	9	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	354.654448411095	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	89084811	89090072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605_89089855_89089924
42913	chr15	+	1618	15	NNC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	2	-2967	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	487.298739198543	2	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGCGGTGTCCTGGATGT	NA	False	NA	NA	False	NA	NA	NA	84076443	84098501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086518_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
42915	chr17	+	2415	5	NIC	ENSMUSG00000023902.19	novel	2698	6	NA	NA	13	1	intron_retention	FALSE	canonical	3	18	junction_2	109.005733794145	1	80	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTAGTCCTGATTTTTTT	898	False	NA	NA	False	NA	NA	NA	23819848	23829987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240
42916	chr5	+	2099	6	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	128	2	52	-2	intron_retention	FALSE	canonical	3	424	junction_4	40.9028116392993	4	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGTTTGAGGTTTGTA	8167	False	NA	NA	False	NA	NA	NA	122510641	122520963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460
42918	chr4	-	4000	13	NNC	ENSMUSG00000028521.18	novel	4021	12	NA	NA	-30	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	14.7221960167482	45	23	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAAAATGTGTGTTAGAA	5628	False	NA	NA	False	NA	NA	NA	103072030	103027853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_103030054_103030103_103030978_103042018_103042102_103046983_103047063_103048028_103048097_103062302_103062396_103065306_103065410_103067725_103067795_103068499_103068572_103070361_103070430_103071067_103071155_103071255_103071290_103071860
42919	chr6	+	1656	12	NNC	ENSMUSG00000030204.11	novel	1764	12	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	212.521812200906	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGTCTGTGTGTG	6633	False	NA	NA	False	NA	NA	NA	134988633	135000735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_134988692_134989273_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997620_134998417_134998542_135000241
42920	chrX	+	1580	5	FSM	ENSMUSG00000015217.12	ENSMUST00000072699.13	1571	5	0	-9	0	9	multi-exon	FALSE	canonical	3	598	junction_1	126.240593708997	1317	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGTCTTTGTCAACTTG	NA	False	NA	NA	False	NA	NA	NA	70599523	70604291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_70599615_70601658_70601814_70602038_70602179_70602703_70602879_70603272
42921	chr11	-	534	6	NNC	ENSMUSG00000078812.11	novel	1409	6	NA	NA	-881	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8485.60234750604	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCCAACTCAGTTGTT	8472	False	NA	NA	False	NA	NA	NA	69810011	69807547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807600_69808031_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976
42924	chr2	+	1692	10	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	103	junction_3	39.9749921826134	198	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATGGATGTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	179712386	179727689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
42925	chrM	+	931	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	4	22	4	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	46	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGTACCACCATACATAT	2	True	NA	113	True	NA	NA	NA	2754	3685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
42926	chr7	-	2202	6	Antisense	novelGene_ENSMUSG00000019737.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGCTACTGAGGGGCCC	NA	False	NA	NA	False	NA	NA	NA	30018410	30014278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_30014510_30014684_30014824_30015652_30015796_30015994_30017466_30018100_30018156_30018247
42927	chr7	-	2877	17	NNC	ENSMUSG00000045659.19	novel	5149	27	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	103.588107878028	2	69	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTGTCCTGGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	115907574	115722727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_115723379_115742601_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776189_115779628_115779734_115780408_115780521_115788500_115788589_115907159_115907218_115907306_115907384_115907485
42929	chr9	+	2510	5	ISM	ENSMUSG00000056267.15	ENSMUST00000185799.7	740	6	73	-1164	-2	-2	intron_retention	FALSE	canonical	3	66	junction_1	131.040785635618	18	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTGTTCTTGGTCATC	NA	False	NA	NA	False	NA	NA	NA	99125492	99146979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878
42930	chr10	-	1908	14	NNC	ENSMUSG00000020166.16	novel	2268	14	NA	NA	2	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	153.379060157098	2	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTGTGCATTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	116417393	116321702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343036_116384937_116385081_116417357
42931	chr11	-	1540	9	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	-39	-45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	372.905463053305	28	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTTTGCTACAACTGTG	NA	False	NA	NA	False	NA	NA	NA	115977860	115969443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115969650_115969929_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
42932	chr11	+	2661	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108633.9	2785	8	6	118	6	-118	multi-exon	FALSE	canonical	3	60	junction_1	4.6246897303539	208	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGAACATAAAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	69737448	69742766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
42933	chr2	-	2430	7	NNC	ENSMUSG00000081590.2	novel	408	4	NA	NA	-144	848963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.05480466765633	12	67	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAACAATTCTTTGGCAAG	NA	False	NA	NA	False	NA	NA	NA	176864807	176010119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176011939_176016804_176016875_176018279_176018394_176050712_176050805_176860529_176860591_176860783_176860911_176864660
42934	chr19	+	2190	21	NNC	ENSMUSG00000010097.16	novel	2326	21	NA	NA	12	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	180.710791044697	29	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTCCCATTACTGGC	8581	False	NA	NA	False	NA	NA	NA	8734448	8748274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8748049
42935	chr8	+	1752	4	NIC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	-2	373	intron_retention	FALSE	canonical	3	714	junction_3	58.8953874820997	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATATGTGTGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	107783535	107785671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_107783623_107783724_107783812_107783904_107784820_107785008
42936	chr2	+	1624	5	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	178	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	772.925610909614	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTTCTTTGTGTGGTTA	NA	False	NA	NA	False	NA	NA	NA	143757417	143785243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780383_143780452_143780613_143781871_143781919_143784054
42937	chr17	-	2661	12	Genic_Genomic	ENSMUSG00000118071.2	novel	2911	1	NA	NA	-40608	-2046	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGCGTCCAACCGTCACG	NA	False	NA	NA	False	NA	NA	NA	31825274	31783801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_31783868_31802673_31802777_31807431_31807559_31809596_31809746_31811072_31811247_31814195_31814297_31815767_31815866_31818486_31818617_31821758_31821834_31822158_31822332_31823724_31823952_31824036
42938	chr6	-	2653	4	NIC	ENSMUSG00000030316.14	novel	531	2	NA	NA	-11	1705	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	196.862614248843	39	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGATGATGATATGTGA	NA	False	NA	NA	False	NA	NA	NA	115014797	115006533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_115008724_115009180_115009274_115011911_115012095_115014610
42939	chr19	+	2206	21	NNC	ENSMUSG00000010097.16	novel	2326	21	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	182.408086443557	17	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTCCCATTACTGGC	8617	False	NA	NA	False	NA	NA	NA	8734484	8748274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746008_8746406_8746548_8747623_8747685_8747937
42940	chr17	+	1874	9	NNC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	-7	-14	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_5	85.7274022702193	17	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTGGGTTGTCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	12338163	12438518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432375_12432445_12434162_12434239_12435580_12435780_12437871
42943	chr5	-	2542	10	NIC	ENSMUSG00000029560.13	novel	2627	11	NA	NA	-8	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	63.0572931723383	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGATGGTTTCCACGCT	7733	False	NA	NA	False	NA	NA	NA	140375004	140326060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_140327398_140330040_140330191_140330463_140330611_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
42944	chr19	+	1933	7	NNC	ENSMUSG00000071655.13	novel	1127	8	NA	NA	18	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	641.638527521532	1	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTGTATATGCCTGGCT	5867	False	NA	NA	False	NA	NA	NA	8848877	8853019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8849083_8849371_8849479_8849581_8849652_8850918_8851070_8851158_8851211_8851502_8852717_8852885
42946	chr7	+	3591	5	NNC	ENSMUSG00000100490.2	novel	1290	3	NA	NA	-2000	1682	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_4	2.44948974278318	54	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATTGGGGGCTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	39136861	39149907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_39136985_39138848_39138976_39143154_39143248_39145691_39145802_39146769
42947	chr2	+	1255	1	ISM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	1548	310	1524	-297	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTAAATGTTTGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	28359625	28360880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28359600_28360900
42948	chr7	+	2385	8	FSM	ENSMUSG00000030752.9	ENSMUST00000033010.9	2389	8	0	4	0	-4	multi-exon	FALSE	canonical	3	41	junction_7	4.74664220738176	104	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAACAAAAAGAAACATTTC	NA	False	NA	NA	False	NA	NA	NA	125043847	125061437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_125043965_125051399_125051901_125054262_125054430_125055604_125055738_125056135_125056181_125059046_125059197_125060086_125060180_125060258
42949	chr1	+	3063	10	Antisense	novelGene_ENSMUSG00000026034.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCGGACAGACGCAGTG	1659	False	NA	NA	False	NA	NA	NA	58451188	58463177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_58451499_58451804_58451896_58452104_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456542_58458824_58460468_58460932_58461094_58463078
42951	chr7	+	2104	5	ISM	ENSMUSG00000051735.8	ENSMUST00000059857.8	2871	12	7014	4	-955	-4	3prime_fragment	FALSE	canonical	3	40	junction_1	3.11247489949718	101	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAATGGAGGTGCAGACC	NA	False	NA	NA	False	NA	NA	NA	28495407	28498384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28495772_28496077_28496372_28496534_28496667_28496984_28497149_28497234
42953	chr17	+	1022	7	FSM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	9	0	-5	0	multi-exon	FALSE	canonical	3	984	junction_4	70.4430423975443	4038	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	NA	False	NA	NA	NA	46957163	46961058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
42954	chrX	+	3115	24	NNC	ENSMUSG00000031060.17	novel	2790	23	NA	NA	-93	-84	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	146.469233270663	1	151	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTAGACTTGGAGTTGG	182	False	NA	NA	False	NA	NA	NA	20483648	20517043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20483734_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512104_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516507_20516585_20516716_20516797
42955	chr4	+	2836	9	NIC	ENSMUSG00000037366.15	novel	2248	11	NA	NA	-7	-5	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	11.6270159542335	8	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGTCGCTGGCTGGCTTT	1859	False	NA	NA	False	NA	NA	NA	134123710	134154719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_134123736_134130280_134130416_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
42956	chr1	-	3063	7	NIC	ENSMUSG00000048495.17	novel	1398	8	NA	NA	7	-14	intron_retention	FALSE	canonical	3	102	junction_5	16.86877457184	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACACTACATAAAGTCTAT	NA	False	NA	NA	False	NA	NA	NA	57445623	57427412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
42960	chr9	-	3832	3	Antisense	novelGene_ENSMUSG00000079260.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCAGCCGCTGCACCTCC	NA	False	NA	NA	False	NA	NA	NA	114237492	114230216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_114230338_114233588_114236491_114236683
42961	chr4	-	2014	9	NIC	ENSMUSG00000028896.14	novel	2285	10	NA	NA	1	-36	combination_of_known_splicesites	FALSE	canonical	2	34	junction_7	128.195590310275	1	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTGTAACACTTTAATAAA	5482	False	NA	NA	False	NA	NA	NA	132073015	132059269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132067235_132067318_132072956
42962	chr7	+	2911	10	NIC	ENSMUSG00000109378.2	novel	3007	10	NA	NA	-18	-148	intron_retention	FALSE	canonical	0	0	junction_8	277.364091955272	29	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCAAGGGAGCCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	30262750	30267232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30265807_30266173_30266362_30266570_30266926_30267005
42963	chr9	-	2412	9	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	6435	92	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	165.087098223938	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACCCCAGACCTAGACCT	8749	False	NA	NA	False	NA	NA	NA	58150471	58126941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58127853_58127999_58128116_58128993_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58150367
42964	chr16	+	2504	1	NIC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	6459	-1488	mono-exon	FALSE	NA	NA	NA	NA	NA	7	66	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAAAGCCTGGAGGTTTC	NA	False	NA	NA	False	NA	NA	NA	48110608	48113112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48110600_48113100
42965	chr4	+	1842	5	NNC	ENSMUSG00000039693.12	novel	1589	3	NA	NA	17	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	131.635861375235	9	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTGTATGTTTTTAAAG	35	False	NA	NA	False	NA	NA	NA	48539951	48561926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_48539998_48549924_48549998_48552111_48552301_48552379_48552831_48560843
42967	chrX	+	1693	4	NNC	ENSMUSG00000001127.13	novel	879	3	NA	NA	-855	211	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	163.71519986448	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTACTTTTATTTCACTT	8005	False	NA	NA	False	NA	NA	NA	20716513	20718664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20716758_20717009_20717808_20717896_20718052_20718168
42968	chr17	+	1573	4	NIC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	-8	-7	intron_retention	FALSE	canonical	3	1395	junction_2	20.2703943940144	255	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGAAGTCTGGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	26342509	26345580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26342824_26343529_26344366_26344451_26344539_26345244
42969	chr2	-	2452	13	ISM	ENSMUSG00000027010.17	ENSMUST00000184169.8	2392	17	52401	-415	13708	415	3prime_fragment	FALSE	canonical	3	108	junction_12	10.467874134173	1	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCTGCATGGAGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	71145476	71104618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326
42970	chr10	+	2630	1	FSM	ENSMUSG00000047514.7	ENSMUST00000061372.7	3086	1	49	407	49	-407	mono-exon	FALSE	NA	NA	NA	NA	NA	152	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATGGCATCCTGTTAGA	NA	False	NA	NA	False	NA	NA	NA	34158234	34160864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_34158200_34160900
42972	chr4	+	2609	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	31	2583	31	1076	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	1	106	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGCCTCCTTCCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	62327064	62342644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
42974	chr18	+	356	1	Intergenic	novelGene_4514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAACAATAAATTCCTCT	NA	False	NA	NA	False	NA	NA	NA	20901794	20902150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_20901800_20902200
42975	chr10	-	1198	4	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	73	3	intron_retention	FALSE	canonical	3	3174	junction_1	643.821058645611	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTTGCTGGTATAAAAT	NA	False	NA	NA	False	NA	NA	NA	23662914	23661077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23661576_23661799_23662779_23662891
42976	chr7	+	1569	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	27	0	27	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	1093	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	92210383	92231502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
42977	chr8	-	1791	9	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38789	-1	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_7	75.7706242550502	62	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	43633312	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43593679_43593776_43594003_43594341_43595725_43595759_43597362_43597564_43618053_43618097_43633233
42978	chr18	+	1408	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	-15	9	-15	-2	multi-exon	FALSE	canonical	3	1641	junction_2	78	3179	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATATTAAGCGTCTGAT	NA	False	NA	NA	False	NA	NA	NA	77017697	77029299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
42979	chr17	+	3119	23	NNC	ENSMUSG00000034709.9	novel	1112	5	NA	NA	-20263	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.1274317461657	6	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGTCAATAAATTCGT	NA	False	NA	NA	False	NA	NA	NA	88817282	88895764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88817439_88828895_88828950_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
42980	chr8	-	1500	8	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	320	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	564.111618713306	2	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCAGGAGAAGGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	85573498	85568904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569430_85569572_85569666_85570693_85570838_85571237_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
42983	chrX	-	1792	14	Antisense	novelGene_ENSMUSG00000079584.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGCAAATGAGCCACCA	NA	False	NA	NA	False	NA	NA	NA	56534131	56454513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_56454732_56459617_56459685_56461123_56461219_56463016_56463146_56463507_56463639_56467202_56467329_56468622_56468758_56481736_56481790_56485247_56485305_56508439_56508599_56509623_56509774_56513776_56513888_56517711_56517883_56533941
42984	chr13	+	3712	3	ISM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	19	2469	7	-4	intron_retention	FALSE	canonical	3	44	junction_1	9.5	121	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCCCTCTGTATACTGT	NA	False	NA	NA	False	NA	NA	NA	21547008	21553990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_21547043_21547749_21548222_21550784
42985	chr11	-	2109	8	NIC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	-12	-6	intron_retention	FALSE	canonical	3	103	junction_4	28.9869780756667	524	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACACTGGAGTCATTGTG	NA	False	NA	NA	False	NA	NA	NA	69470162	69452590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69453086_69453219_69453324_69453474_69453684_69454129_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
42986	chr11	-	2913	5	NIC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	281.130196706081	2	120	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	54678460	54608281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54610551_54614399_54614502_54631063_54631377_54647231_54647386_54678385
42987	chr11	-	1971	4	NNC	ENSMUSG00000038909.17	novel	3248	13	NA	NA	1408	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	377.037870187539	2	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTCTGACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	95171312	95165089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167369_95168290_95168442_95171216
42988	chr14	+	1558	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-4	1288	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	2344.2559955857	2	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTGTGCTGCAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	63359958	63380600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379303_63380036
42991	chr12	-	1785	8	NNC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	19	-13	intron_retention	FALSE	canonical	3	94	junction_1	80.1327979426804	815	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTATAAACTTTTTCATG	NA	False	NA	NA	False	NA	NA	NA	56392660	56375100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_56375582_56377013_56377053_56382582_56382681_56384087_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
42992	chr17	+	1170	5	Antisense	novelGene_ENSMUSG00000064308.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTCAGGTTCCTGAGC	3860	False	NA	NA	False	NA	NA	NA	37279934	37292123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_37280210_37280331_37280612_37281211_37281462_37281732_37282004_37292029
42993	chr9	+	2093	1	Intergenic	novelGene_1055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACTTCGGCCAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	57384746	57386839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_57384700_57386800
42995	chr2	-	2469	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	309	0	-167	0	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	329	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTCTCACTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	127498306	127475145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
42996	chr12	+	2203	6	FSM	ENSMUSG00000085793.4	ENSMUST00000137170.4	2270	6	65	2	65	-2	multi-exon	FALSE	canonical	3	123	junction_1	15.7810012356631	263	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGAGGCCCAGGTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	84498260	84578345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84498318_84503014_84503090_84504722_84504761_84506392_84506460_84509142_84509227_84576463
42998	chr6	-	1028	9	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1930.50511120147	72	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCGGGCTGATTGCTGGT	9997	False	NA	NA	False	NA	NA	NA	125471723	125437229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437455_125437622_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
43001	chr1	-	4838	7	ISM	ENSMUSG00000041570.15	ENSMUST00000048309.12	7823	19	64445	207	91	-78	3prime_fragment	FALSE	canonical	3	44	junction_3	5.93717104351896	51	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTTCCCCTTTCATCTG	3424	False	NA	NA	False	NA	NA	NA	136209397	136196067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_136198886_136199268_136199388_136201487_136201604_136202538_136202612_136204275_136204497_136204931_136205069_136208043
43003	chr17	-	826	3	Genic_Genomic	ENSMUSG00000051639.4	novel	957	1	NA	NA	-64	125	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6172503	6171357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_6171771_6171908_6172146_6172327
43006	chr13	+	3636	6	Antisense	novelGene_ENSMUSG00000034928.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	130	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGTGTACCTGAGGAAC	NA	False	NA	NA	False	NA	NA	NA	54829758	54834015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_54829844_54829922_54830046_54830137_54830232_54830394_54830768_54830857_54831578_54831774
43008	chr4	-	1310	4	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	245	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	461.976430375211	19	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224392	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219551_127219604_127220034_127220304_127220565_127224294
43010	chr5	-	2099	4	NNC	ENSMUSG00000028933.12	novel	3247	3	NA	NA	-4890	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.4142135623731	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCTATATTTCATATTT	NA	False	NA	NA	False	NA	NA	NA	25903326	25894811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25895487_25896692_25897827_25901377_25901590_25903248
43011	chr2	+	2200	9	NNC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	16	-66	intron_retention	FALSE	canonical	0	0	junction_4	855.732580891951	3	82	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACCTCTAGTCTGTCCGC	NA	False	NA	NA	False	NA	NA	NA	90884415	90889711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90886282_90886388_90887044_90887147_90887256_90888207_90888354_90888501_90889390
43012	chr5	-	2797	1	FSM	ENSMUSG00000055204.16	ENSMUST00000197037.2	8281	1	2040	3444	2040	-3444	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGCAAGTCGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	90421319	90418522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_90418500_90421300
43014	chr16	+	3000	18	NNC	ENSMUSG00000043065.13	novel	4627	18	NA	NA	41	69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.9148444266967	1	133	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGTTCTGGCTTTCAG	6442	False	NA	NA	False	NA	NA	NA	44167817	44207575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_44167870_44175802_44175899_44176507_44176560_44178132_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192898_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
43015	chr11	+	1298	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	-1	329	-1	328	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGATGTTCATCCTCCTG	NA	False	NA	NA	False	NA	NA	NA	120653618	120654916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120654900
43016	chr4	+	2170	6	ISM	ENSMUSG00000029063.17	ENSMUST00000105612.2	2737	10	4318	4	36	0	3prime_fragment	FALSE	canonical	3	675	junction_1	26.1380948043273	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	717	False	NA	NA	False	NA	NA	NA	155671269	155675454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
43017	chr2	+	3504	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	68	22	42	-22	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	1	177	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACTGATTGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	60040298	60079533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
43018	chr13	-	2295	12	FSM	ENSMUSG00000033114.12	ENSMUST00000099441.6	2303	12	8	0	8	0	multi-exon	FALSE	canonical	3	80	junction_8	14.1169846708972	294	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTATGGTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	64277161	64244121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
43019	chr4	+	3041	12	FSM	ENSMUSG00000028759.14	ENSMUST00000097836.10	3113	12	16	56	8	-34	multi-exon	FALSE	canonical	3	37	junction_1	20.9126479187884	1	76	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAAATATGAATAAACAT	4581	False	NA	NA	False	NA	NA	NA	137943953	137970425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_137944052_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
43020	chr15	-	2873	1	Intergenic	novelGene_3212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	112	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTGCTTAACAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	8269479	8266606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_8266600_8269500
43021	chr1	+	3583	15	NNC	ENSMUSG00000026048.17	novel	3907	15	NA	NA	-13	-93	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	43.8369544041163	40	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATTTTGAATGTATAGTT	NA	False	NA	NA	False	NA	NA	NA	44187055	44220327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_44187126_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218303_44218392_44219690
43022	chr11	+	3655	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	24	8	-5	-8	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	294	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGTTATACACTTTTCA	NA	False	NA	NA	False	NA	NA	NA	80099933	80158304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
43023	chr1	+	2524	4	ISM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	17	151	1	-11	intron_retention	FALSE	canonical	3	180	junction_1	139.943639448966	39	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTAAACTAAAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	37469267	37478054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242
43025	chr16	+	825	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-77	221	-77	-221	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGATGCGCCCATGTCCCAG	NA	False	NA	NA	False	NA	NA	NA	24348066	24348891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24348900
43026	chr11	-	1819	13	FSM	ENSMUSG00000018697.15	ENSMUST00000018841.3	1822	13	-2	5	-2	-5	multi-exon	TRUE	canonical	3	481	junction_8	26.3136793744665	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTCACTGTCTTCACTG	NA	False	NA	NA	False	NA	NA	NA	84404350	84313685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
43028	chr2	+	1480	12	NNC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	584.470361357858	6	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8563	False	NA	NA	False	NA	NA	NA	61542053	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615822_61615904_61627738_61627802_61630325
43029	chr15	+	2430	18	NNC	ENSMUSG00000022436.17	novel	2375	18	NA	NA	27	-10	intron_retention	FALSE	canonical	0	0	junction_14	116.959638736727	2	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAACAAAACAGGAGTAAC	4425	False	NA	NA	False	NA	NA	NA	78783994	78796237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792203_78792259_78792552_78792713_78794207_78794300_78795538
43030	chr11	+	1525	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	4	28	4	-28	multi-exon	FALSE	canonical	3	311	junction_5	11.6303613925986	470	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTGCATGGTCTTTGGC	NA	False	NA	NA	False	NA	NA	NA	119804639	119810346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
43031	chr4	-	1825	16	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	47	-387	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	274.112304640918	1	38	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTACAGGGGACTAGGT	NA	False	NA	NA	False	NA	NA	NA	120427426	120397451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405249_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416008_120424446_120424625_120427347
43032	chr15	-	2837	12	NNC	ENSMUSG00000016664.17	novel	3083	12	NA	NA	-3	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	181.549073574344	2	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGACAGTCCCTTTGCC	7140	False	NA	NA	False	NA	NA	NA	83348774	83260334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83260668_83260963_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
43033	chr14	-	1163	8	NNC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1537.42788116904	1	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8741	False	NA	NA	False	NA	NA	NA	52341469	52312258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312754_52313146_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
43034	chr7	+	3196	19	ISM	ENSMUSG00000055629.6	ENSMUST00000048002.7	3556	20	2738	34	-652	-34	3prime_fragment	FALSE	canonical	3	132	junction_13	21.5715862498179	132	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGAATGAAATGAAATATT	NA	False	NA	NA	False	NA	NA	NA	140643754	140652279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_140643854_140644190_140644287_140644372_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785_140648675_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
43035	chr17	-	1223	6	FSM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	5	10	5	-10	multi-exon	FALSE	canonical	3	1022	junction_5	40.2124358874217	1827	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGGGAAGTCTCCCC	800	False	NA	NA	False	NA	NA	NA	34822659	34820074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822307
43036	chr17	-	1830	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	62	7973	0	-42	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	3	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACACATCATAGGCTGAA	NA	False	NA	NA	False	NA	NA	NA	30831571	30811882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
43037	chr13	-	2508	5	NNC	ENSMUSG00000069184.5	novel	4153	5	NA	NA	13	511	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	13.7181449183189	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCATTGTTGTATATTAG	NA	False	NA	NA	False	NA	NA	NA	74538942	74519033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74520947_74523086_74523183_74524554_74524639_74526730_74526986_74538782
43038	chr6	-	1588	10	NIC	ENSMUSG00000030056.9	novel	5837	11	NA	NA	19	3052	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	90.9278645037366	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGGAAACATCTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	87815761	87795437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87811409_87811476_87811924_87811977_87812709_87812733_87815625
43039	chr13	-	1751	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	65	89	3	-89	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334800	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
43040	chrX	+	2228	9	NNC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-4	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	557.782663767887	1	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGTTTGATTTAATAAACA	NA	False	NA	NA	False	NA	NA	NA	72235808	72246501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72235856_72237775_72237913_72238612_72238676_72239547_72239583_72240958_72241077_72241214_72241992_72243351_72243451_72245455_72245552_72245645
43041	chr6	+	3066	4	NNC	ENSMUSG00000085412.8	novel	408	3	NA	NA	-8	1258	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	95.2062089478529	2	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTAATGAAAACAAATAATG	815	False	NA	NA	False	NA	NA	NA	52079965	52091922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52080017_52083750_52083877_52088920_52089574_52089686
43042	chr16	-	2977	3	NNC	ENSMUSG00000051065.10	novel	3055	2	NA	NA	34	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.5	1	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCTGTTGTCATTATTA	4831	False	NA	NA	False	NA	NA	NA	28748391	28644930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_28645612_28645652_28647762_28748204
43044	chrX	-	2812	13	NNC	ENSMUSG00000031358.18	novel	2399	13	NA	NA	405	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	12.7287404456738	9	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	167456489	167437112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258_167455342_167455905
43046	chr3	-	1639	8	NIC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	3	0	intron_retention	FALSE	canonical	3	355	junction_4	256.974071589699	87	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTATATAGCTTTTT	6157	False	NA	NA	False	NA	NA	NA	153618589	153612923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
43047	chr14	-	2373	9	FSM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	0	1741	0	1535	multi-exon	FALSE	canonical	3	306	junction_8	29.8556422640679	252	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAATGTTTGAAAG	NA	False	NA	NA	False	NA	NA	NA	57015773	56959907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247
43048	chr14	+	1473	10	FSM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	64	456	41	428	multi-exon	TRUE	canonical	3	97	junction_1	15.6828127988557	534	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTAGACGTTCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	55909755	55916201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
43049	chr6	-	2365	2	ISM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	424	2	391	-2	intron_retention	FALSE	canonical	3	1416	junction_1	0	3	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTGGTCAATTGTT	376	False	NA	NA	False	NA	NA	NA	8258749	8255937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_8256248_8256694
43050	chr2	+	2840	9	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	1	0	intron_retention	FALSE	canonical	3	26	junction_7	59.5911853800543	7	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	179712385	179727695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179725254_179725856_179726106_179726243_179726383_179727172
43051	chr4	-	2546	9	NNC	ENSMUSG00000028232.14	novel	2690	8	NA	NA	20	-237	intron_retention	FALSE	non_canonical	0	0	junction_4	33.9926462635671	135	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTCTAGTAAAAATGTTA	-2	True	NA	NA	False	NA	NA	NA	3574833	3549277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3550580_3551751_3551892_3554353_3554415_3555805_3555927_3560498_3560693_3564092_3564258_3569363_3569753_3570328_3570373_3574703
43052	chr7	-	1728	14	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	542.929441730898	2	79	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33929735	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907112_33918480_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
43053	chr17	-	1661	7	NNC	ENSMUSG00000024327.17	novel	2433	6	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	231.179163324802	111	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACATGCAGCCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	34250667	34247250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249629_34250441
43054	chr15	-	2714	15	NNC	ENSMUSG00000042632.18	novel	2963	16	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	82.1971559664907	2	96	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	79212378	79170427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79171096_79171309_79171377_79171824_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
43055	chr10	+	2287	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	-35	-2	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	74	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGTGTATACTGGTT	5340	False	NA	NA	False	NA	NA	NA	78410274	78420332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
43056	chrX	+	1845	5	ISM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	0	16	0	-16	intron_retention	FALSE	canonical	3	578	junction_1	100.528602894898	87	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTATCAGACAGCAGCAA	NA	False	NA	NA	False	NA	NA	NA	20736404	20740956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606
43059	chr18	+	2995	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	39	6	39	-6	multi-exon	FALSE	canonical	3	128	junction_1	18.5	487	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTAAGAAAATTTCTTACT	1098	False	NA	NA	False	NA	NA	NA	24122727	24138427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_24122789_24123234_24123448_24135706
43066	chr18	+	1994	19	Intergenic	novelGene_4544	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.458122847290851	1	26	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATACAGCTCCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	56659815	56695339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_56660080_56661106_56661234_56661348_56661419_56664560_56664638_56664783_56664880_56665051_56665168_56665557_56665667_56667261_56667351_56670278_56670371_56671772_56671814_56675295_56675395_56678037_56678114_56679974_56680016_56681513_56681651_56683366_56683490_56684229_56684313_56692293_56692359_56693846_56693901_56695104
43067	chr9	+	3191	19	FSM	ENSMUSG00000035769.10	ENSMUST00000039610.10	3383	19	205	-13	-1	4	multi-exon	FALSE	canonical	3	51	junction_3	12.9909750249458	99	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTCTCCTTGCTTCCC	NA	False	NA	NA	False	NA	NA	NA	119186651	119222399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119186774_119188297_119188381_119190179_119190250_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
43068	chr17	-	1870	5	ISM	ENSMUSG00000039183.7	ENSMUST00000234579.2	1445	7	89	2	57	-1	intron_retention	TRUE	canonical	3	605	junction_4	67.1355904122396	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCAAGGTGTCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	25105224	25101586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392
43070	chr3	+	2159	17	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	69	-5830	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	402.401230117404	1	99	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTGTGTGTAACTGAGG	NA	False	NA	NA	False	NA	NA	NA	63883595	63924170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887731_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901330_63901368_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
43071	chr3	-	1860	4	NNC	ENSMUSG00000027808.9	novel	4611	3	NA	NA	144	-2152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	417.550795313177	75	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTGCAGAGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	58433169	58429389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_58429745_58430199_58431290_58432503_58432580_58432830
43072	chr8	+	589	5	Antisense	novelGene_ENSMUSG00000093904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCTGCAGTCAGTAAGT	NA	False	NA	NA	False	NA	NA	NA	127661568	127670422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_127661810_127663789_127663931_127666619_127666704_127667928_127667975_127670345
43073	chr5	+	1939	2	ISM	ENSMUSG00000004455.17	ENSMUST00000128309.8	2492	6	14196	5	-180	-1	3prime_fragment	FALSE	canonical	3	2938	junction_1	0	6	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAACTTGTTCGTGTCTTT	1452	False	NA	NA	False	NA	NA	NA	122310614	122313327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122311344_122312117
43074	chr9	+	1778	6	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-17	-3	intron_retention	FALSE	canonical	3	966	junction_4	56.2800142146393	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTTGAAAATGAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	20914193	20920124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20919196_20919789
43075	chr1	-	1453	10	NNC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	29	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	279.12022278121	3	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAACAAGACCTTTTTAA	821	False	NA	NA	False	NA	NA	NA	175453172	175428952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442443_175442480_175444094_175444206_175446616_175446752_175453016
43076	chr19	-	1726	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-64	-350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1449.7135708477	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGACTTTGTGCATGACT	NA	False	NA	NA	False	NA	NA	NA	15902358	15882843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892383_15894440_15894614_15895569_15895776_15896818_15896889_15898308_15898361_15902227
43077	chr9	+	491	2	NNC	ENSMUSG00000032115.15	novel	2015	14	NA	NA	-5045	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGTATGTGTTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	44296912	44303658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44296976_44303230
43078	chr4	-	4742	23	NNC	ENSMUSG00000039936.19	novel	4335	25	NA	NA	2176	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	5.73448319560369	27	66	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTTCTTAAGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	149756475	149733637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149756359
43079	chr15	-	1284	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	9979.59910993732	4	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	3572	False	NA	NA	False	NA	NA	NA	79967553	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965230_79965815_79965985_79966590_79966784_79967524
43080	chr5	+	2879	21	FSM	ENSMUSG00000004952.14	ENSMUST00000042135.14	2914	21	34	1	-4	-1	multi-exon	FALSE	canonical	3	36	junction_7	10.6273232754067	99	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGAGGTGTTGGGTTGG	2186	False	NA	NA	False	NA	NA	NA	136112803	136140713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
43081	chr7	+	2319	13	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	40	11398	14	-2075	5prime_fragment	FALSE	canonical	3	83	junction_7	5.69356361751291	12	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTGTAGATAATAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	55443952	55465449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607
43082	chr2	+	3504	10	NIC	ENSMUSG00000033955.14	novel	5747	12	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_4	75.5348010710262	4	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	NA	False	NA	NA	NA	84881207	84903382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84881318_84882268_84882900_84884626_84884697_84888469_84889832_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
43083	chr2	+	1379	6	NNC	ENSMUSG00000032966.15	novel	783	6	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	948.646066770953	83	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTCATGGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	151384493	151403611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540_151402937_151403123
43084	chr7	+	1322	8	NNC	ENSMUSG00000066979.7	novel	2218	8	NA	NA	-9	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	478.238562277217	8	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTGTTTGTAAACATT	NA	False	NA	NA	False	NA	NA	NA	131162099	131172906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165205_131167943_131168081_131169912_131170091_131170233_131170451_131172607
43086	chr7	-	2648	21	FSM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	-7	0	1	0	multi-exon	FALSE	canonical	3	51	junction_5	7.20416546173115	138	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTATTGATGTGTACG	NA	False	NA	NA	False	NA	NA	NA	143376585	143349320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322_143369413_143369910_143369965_143372829_143372947_143374908_143374970_143376395
43087	chr11	+	1785	7	NNC	ENSMUSG00000069844.13	novel	2412	6	NA	NA	-27	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	109.193126564308	33	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTGGTACTTACATGAA	NA	False	NA	NA	False	NA	NA	NA	66943468	66956388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731_66955458_66956101
43088	chr18	+	1554	4	ISM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	16871	12	-220	-12	3prime_fragment	FALSE	canonical	3	1085	junction_3	97.7991138337494	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTGCTAATACACTGCA	8012	False	NA	NA	False	NA	NA	NA	68450341	68454965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_68451183_68452188_68452291_68453296_68453331_68454388
43089	chr14	+	3745	8	ISM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	44	246	11	-246	intron_retention	FALSE	canonical	3	54	junction_3	8.9511143987546	16	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACAGTGTACTTTAACTG	NA	False	NA	NA	False	NA	NA	NA	70337597	70375409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184
43090	chr1	+	1316	9	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1206	junction_4	1568.3870247407	270	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
43091	chr9	+	3872	4	ISM	ENSMUSG00000032594.12	ENSMUST00000176566.2	786	5	7764	-3175	-57	0	3prime_fragment	FALSE	canonical	3	206	junction_3	40.5407887880287	160	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	2322	False	NA	NA	False	NA	NA	NA	107909214	107925981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_107909409_107918103_107918286_107921923_107922100_107922661
43093	chr2	+	2068	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	29	-17	5	17	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	5	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCGTACCAACTAAGTCA	NA	False	NA	NA	False	NA	NA	NA	28358106	28361207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
43094	chr3	+	1857	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	188	12	188	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	8	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACACTGAAATTATGCCT	4795	False	NA	NA	False	NA	NA	NA	34704741	34706598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34704700_34706600
43095	chr2	-	3381	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	19	151	19	-150	multi-exon	FALSE	canonical	3	217	junction_4	20.2170445141937	2	145	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTACACAATGGAAGGATG	NA	False	NA	NA	False	NA	NA	NA	91540902	91505113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
43096	chr7	+	4215	4	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-160	291	intron_retention	FALSE	canonical	3	27	junction_1	2.82842712474619	3	86	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTATTAAAGTAGAGACTT	2994	False	NA	NA	False	NA	NA	NA	6980084	6994377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6980472_6984231_6984357_6987994_6989202_6991881
43097	chr15	+	1116	9	Antisense	novelGene_ENSMUSG00000036606.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGATCACAGCATCAGG	NA	False	NA	NA	False	NA	NA	NA	89047480	89050969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89047576_89048216_89048316_89048414_89048521_89048615_89048738_89049449_89049600_89049901_89050033_89050108_89050208_89050566_89050695_89050783
43098	chr18	-	2340	6	NNC	ENSMUSG00000047989.12	novel	2498	5	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	293.661710136	518	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGGGTGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	24254902	24237813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24238493_24238542_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
43100	chrX	+	2771	4	ISM	ENSMUSG00000039382.13	ENSMUST00000208517.2	755	7	462	-331	462	-9	intron_retention	FALSE	canonical	3	222	junction_3	7.11805216802087	21	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTTTGAGTGGCATTTAT	6604	False	NA	NA	False	NA	NA	NA	7591053	7594412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_7592532_7592924_7593005_7593116_7593326_7593408
43101	chr12	-	2151	5	ISM	ENSMUSG00000020650.16	ENSMUST00000020979.9	1949	7	6254	829	6254	-829	3prime_fragment	FALSE	canonical	3	313	junction_3	48.2564762493077	2	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTCAGCTCTTTTGGAA	NA	False	NA	NA	False	NA	NA	NA	31678344	31646188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724
43102	chr4	-	1752	5	NNC	ENSMUSG00000040842.18	novel	3244	4	NA	NA	19356	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.8785680461808	64	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTCCTCATTTCTG	NA	False	NA	NA	False	NA	NA	NA	140847682	140840325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_140840871_140842375_140843176_140843847_140843952_140845837_140846093_140847634
43103	chr8	-	2676	7	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	74	-2	intron_retention	FALSE	canonical	3	350	junction_6	48.3517206404166	8	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCTAGAATATATTGTTA	NA	False	NA	NA	False	NA	NA	NA	110335181	110320110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110320764_110321251_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
43104	chr11	-	3230	22	NIC	ENSMUSG00000017146.13	novel	6572	23	NA	NA	27	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_13	76.2771530776592	25	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGACAAAGAATGACTGA	NA	False	NA	NA	False	NA	NA	NA	101442678	101379589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
43107	chr10	-	2261	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	27	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	483	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	NA	False	NA	NA	NA	75768309	75759055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
43108	chr4	+	2473	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	315	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	259.999686028068	2	132	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACTTCTCAGATGATCAG	5363	False	NA	NA	False	NA	NA	NA	89055673	89099307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066517_89070245_89070305_89074682_89074851_89089364_89089466_89090381_89090622_89095039_89095163_89097704
43110	chr14	-	3211	5	NIC	ENSMUSG00000037722.9	novel	2788	6	NA	NA	-18	683	intron_retention	FALSE	canonical	3	1091	junction_1	68.0753259265059	5	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATAGTCTTTCATGTTA	NA	False	NA	NA	False	NA	NA	NA	45626268	45614927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_45615944_45618393_45618456_45619012_45620914_45622037_45622206_45626204
43111	chr12	-	3923	1	FSM	ENSMUSG00000070129.4	ENSMUST00000093621.4	80	1	-3912	69	-3912	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	29	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTCATTTGAGACGATGA	NA	False	NA	NA	False	NA	NA	NA	109565743	109561820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_109561800_109565700
43112	chr5	+	1374	10	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-16	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	584.73174180691	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAAGAAACAAAAACCCAA	8102	False	NA	NA	False	NA	NA	NA	145051094	145064917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061477_145062428_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
43113	chr2	+	2344	4	FSM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	-1	0	-1	0	multi-exon	FALSE	canonical	3	7	junction_1	29.2726645334669	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2334	False	NA	NA	False	NA	NA	NA	90735082	90740905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90735157_90736009_90736628_90737888_90737996_90739360
43114	chr16	+	2459	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	33	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	344.590966590907	1	97	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTCCGTGACTACTGT	NA	False	NA	NA	False	NA	NA	NA	13598609	13632692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606650_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629510_13632059
43115	chr5	+	1429	9	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_7	316.122602798345	5671	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	NA	False	NA	NA	NA	73450145	73471284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73467616_73467770_73470785
43116	chr16	+	2470	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	25	-464	5	464	multi-exon	FALSE	canonical	3	98	junction_4	11.0896163971859	401	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAAAAATACATACATT	NA	False	NA	NA	False	NA	NA	NA	37360271	37393211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
43117	chr7	-	2452	22	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	316.466854253759	1	132	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153788	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124285_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
43118	chr8	+	2123	8	FSM	ENSMUSG00000031799.11	ENSMUST00000003575.11	2158	8	30	5	1	-3	multi-exon	FALSE	canonical	3	688	junction_1	35.3714978074559	1276	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTGTCTGGATTTATTC	NA	False	NA	NA	False	NA	NA	NA	72889102	72906981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
43119	chr8	-	3290	15	FSM	ENSMUSG00000031832.16	ENSMUST00000147964.8	3309	15	18	1	2	-1	multi-exon	FALSE	canonical	2	19	junction_9	11.7969643276115	73	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGGTGTGTAAAGCCCA	1082	False	NA	NA	False	NA	NA	NA	120331943	120324714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329496_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
43120	chr12	+	1673	12	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	1	-414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1280.66356121535	1	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATTTTGGACAATGCTG	NA	False	NA	NA	False	NA	NA	NA	17316596	17334357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17316653_17320396_17320543_17323951_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330397_17330521_17330911_17331071_17333200_17333298_17333938
43122	chr9	+	1944	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	250	3	-60	-3	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1	96	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTCCTGTATTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	108183577	108215130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
43123	chr19	-	2334	9	FSM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	-10	0	-10	0	multi-exon	FALSE	canonical	3	33	junction_8	11.9973955507018	108	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	45548980	45540713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
43124	chr6	-	2582	6	Antisense	novelGene_ENSMUSG00000007458.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGGGGGCGCAGACCCCA	1096	False	NA	NA	False	NA	NA	NA	122293385	122286040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122286127_122289145_122289371_122290215_122292120_122292254_122292390_122293002_122293136_122293286
43125	chr7	-	3425	5	Antisense	novelGene_ENSMUSG00000054893.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTCCCGCGCCTGCGCA	NA	False	NA	NA	False	NA	NA	NA	6310658	6289600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_6289652_6292354_6292435_6293532_6293661_6296846_6296938_6307583
43126	chr15	-	2029	10	NIC	ENSMUSG00000022992.18	novel	2324	10	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	387.907205398405	36	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	NA	False	NA	NA	NA	98432181	98416700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
43127	chr15	+	3067	9	NNC	ENSMUSG00000041653.6	novel	1313	8	NA	NA	-63	2287	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	14.5425023637612	103	26	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTGTCTCTTCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	84051974	84073724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84052262_84055282_84055516_84056916_84056983_84058468_84058679_84061016_84061078_84063380_84063537_84065120_84065254_84070177_84070283_84071908
43128	chr16	-	2004	7	NNC	ENSMUSG00000044626.14	novel	3923	10	NA	NA	-4685	476	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	70.2766359151856	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGCCTGTTAGAGGAAT	NA	False	NA	NA	False	NA	NA	NA	21800188	21773660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21774928_21777530_21777705_21784699_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085
43129	chr9	-	1678	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	295	0	-6	0	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	543	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGAACCTTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	35481399	35472115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
43130	chr12	+	1159	3	NIC	ENSMUSG00000021268.18	novel	797	5	NA	NA	-96	-4	intron_retention	FALSE	canonical	3	415	junction_1	2	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAACTAAAGCAGTGATG	NA	False	NA	NA	False	NA	NA	NA	109515495	109538149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109516246_109524670_109524755_109537824
43131	chr9	+	1247	9	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.514274957871	121	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGAGTGGCTTTTC	641	False	NA	NA	False	NA	NA	NA	45281755	45307453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306818_45307082
43132	chr4	+	4227	8	NIC	ENSMUSG00000059810.19	novel	4084	11	NA	NA	1491	-5	intron_retention	FALSE	canonical	3	19	junction_7	17.8314100304342	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCCCTCCGACTCCTGT	109	False	NA	NA	False	NA	NA	NA	62543436	62578072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_62544331_62544728_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62575339
43133	chr13	+	2172	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	409.299805251007	3	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	NA	NA	NA	54225909	54262361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54225945_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247876_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525_54260657_54261234
43134	chr11	+	1014	2	ISM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	20065	-52	16706	52	3prime_fragment	FALSE	canonical	2	3	junction_1	0	61	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	5732214	5734762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_5732358_5733891
43135	chr9	-	1674	12	Antisense	novelGene_ENSMUSG00000032279.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	51	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCGCATAGCCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	54511226	54493756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_54493826_54497139_54497205_54499677_54499762_54502449_54502563_54503283_54503473_54504117_54504251_54505674_54505797_54505889_54505943_54506871_54506960_54508343_54508497_54510563_54511012_54511069
43136	chr1	+	1608	10	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	0	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	319.266559167209	18	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGTTCTATTCCATGTC	NA	False	NA	NA	False	NA	NA	NA	15875869	15913658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877918_15883263_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
43137	chr18	+	2912	16	FSM	ENSMUSG00000024561.12	ENSMUST00000224047.2	2838	16	-67	-7	49	7	multi-exon	FALSE	canonical	3	24	junction_11	21.6794833886788	43	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	74401294	74415763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
43138	chr5	+	3737	16	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	57	9587	49	-1560	5prime_fragment	FALSE	canonical	3	18	junction_10	3.53396220818629	27	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAAGTTGAGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	23639495	23699646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196
43139	chr16	-	3191	17	NIC	ENSMUSG00000022843.18	novel	2730	23	NA	NA	-310	-8	intron_retention	TRUE	canonical	3	164	junction_14	32.6649061494136	9	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGAACACTTGTGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	20531448	20521721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403
43140	chr2	-	4590	22	NNC	ENSMUSG00000027276.8	novel	5612	26	NA	NA	-12424	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	30.2333329583211	57	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGGAACAGTGTGGAGT	NA	False	NA	NA	False	NA	NA	NA	136940293	136923381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_136925402_136926201_136926353_136926494_136926627_136926841_136927076_136927165_136927276_136927837_136927952_136928996_136929083_136929535_136929564_136930031_136930149_136930315_136930430_136930516_136930631_136931131_136931246_136931684_136931850_136932774_136932926_136933355_136933530_136933869_136933917_136934416_136934531_136935126_136935241_136936372_136936487_136937366_136937487_136938112_136938244_136940167
43141	chr9	-	4403	20	NNC	ENSMUSG00000032228.17	novel	3489	21	NA	NA	-343	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	23.7040852282828	88	39	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAACATAGTAAACTAGTGA	NA	False	NA	NA	False	NA	NA	NA	72018106	71751562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71776280_71776353_71777355_71777430_71783270_71783350_71789998_71790043_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957_72017031_72018019
43142	chr13	-	2898	16	NNC	ENSMUSG00000021461.18	novel	2995	16	NA	NA	4	-23	intron_retention	FALSE	non_canonical	0	0	junction_13	40.828856897488	55	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAAAGTTGTACTTAA	NA	False	NA	NA	False	NA	NA	NA	63579504	63459591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63547889_63547950_63548047_63548133_63550655_63550853_63579263
43143	chr11	-	1940	1	NIC	ENSMUSG00000017615.13	novel	3720	7	NA	NA	9827	-1655	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTCTATCATTCAGGGG	4961	False	NA	NA	False	NA	NA	NA	78417270	78415330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_78415300_78417300
43144	chr2	-	757	5	FSM	ENSMUSG00000027239.15	ENSMUST00000069423.13	773	5	23	-7	23	7	multi-exon	FALSE	canonical	3	1617	junction_4	477.436121381699	5607	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCTTTTTTAATATATAA	NA	False	NA	NA	False	NA	NA	NA	91762102	91760165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762038
43146	chrX	+	2424	18	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	24	-732	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	303.280928842069	1	123	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAAAGGAGCCTAATCT	NA	False	NA	NA	False	NA	NA	NA	150799447	150844958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809328_150819200_150819245_150819336_150819484_150820371_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830858_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
43148	chr7	+	2320	19	NNC	ENSMUSG00000040811.16	novel	596	6	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	42.9437257378411	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGATGTCTGGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	18915157	18940400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_18915281_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920182_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
43149	chr11	-	2847	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	26	0	-3	0	multi-exon	FALSE	canonical	3	81	junction_4	37.662979170533	191	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTCTTGTCTATGTTGGC	9018	False	NA	NA	False	NA	NA	NA	118309852	118297114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309755
43151	chr6	-	2542	11	Antisense	novelGene_ENSMUSG00000030204.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCGGAAGTGGGGCCGAG	NA	False	NA	NA	False	NA	NA	NA	135000723	134988593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_134988699_134989272_134989357_134992155_134992346_134992537_134992608_134992781_134992902_134993542_134993615_134994081_134995157_134995932_134996073_134997576_134997650_134998411_134998542_135000240
43152	chr19	+	4075	7	NNC	ENSMUSG00000025086.14	novel	1564	7	NA	NA	1	1893	intron_retention	FALSE	canonical	2	2	junction_6	76.1498887428968	62	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCCTGCCTGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	57441366	57477342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57473979
43153	chr9	-	4449	10	FSM	ENSMUSG00000054792.16	ENSMUST00000068025.13	4530	10	78	3	-26	-1	multi-exon	FALSE	canonical	1	6	junction_9	1.68508343201146	33	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTCTTGCAGTTTCCTGA	2036	False	NA	NA	False	NA	NA	NA	110305684	110254996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110258086_110259013_110259126_110261501_110261607_110265078_110265302_110266414_110266552_110267965_110268127_110275741_110275941_110279787_110279929_110284424_110284556_110305533
43154	chr7	-	2993	23	NNC	ENSMUSG00000054662.9	novel	3088	23	NA	NA	26	-3	intron_retention	FALSE	non_canonical	0	0	junction_4	50.0881041946906	1	98	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCTGAGCCTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140697660	140681140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682434_140683009_140683148_140683904_140684058_140684168_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
43155	chr8	+	2200	7	NNC	ENSMUSG00000031562.17	novel	2096	6	NA	NA	-24	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	167.145312693942	3	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	NA	False	NA	NA	NA	48563023	48594700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_48563284_48564693_48564826_48565002_48565139_48582706_48582842_48590292_48590410_48591816_48591914_48593377
43157	chr8	+	1104	6	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	-69	1280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2672.65533879698	39	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57964871	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999_57967178_57967260
43158	chr13	+	1976	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	-25	6	-25	-5	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	707	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGACTACGACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	25015636	25026130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
43160	chr2	-	1866	11	NNC	ENSMUSG00000051730.16	novel	968	7	NA	NA	2240	7971	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGGTAGGAAGGTTATT	3366	False	NA	NA	False	NA	NA	NA	69702154	69693570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_69693658_69696531_69696635_69696828_69697007_69697613_69697719_69697793_69697903_69699132_69699195_69699485_69699526_69700223_69700363_69700726_69700923_69701019_69701177_69701464
43161	chr19	-	2048	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1224.44908515225	1	89	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3777	False	NA	NA	False	NA	NA	NA	7017321	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999475_6999626_6999677_7002682_7002808_7003694_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
43162	chr15	+	1653	2	Genic_Genomic	ENSMUSG00000022191.17	novel	4570	35	NA	NA	52994	-45	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGGTTGTTGTCTTAAT	7689	False	NA	NA	False	NA	NA	NA	12931787	12935331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_12932367_12934257
43163	chr12	-	2566	12	NNC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	5	-202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.0420385369549	1	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGATTTCTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	32000228	31976454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31977404_31977471_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
43164	chr11	+	2503	22	ISM	ENSMUSG00000059439.16	ENSMUST00000092821.10	2769	24	-48	241353	-3	-19047	5prime_fragment	FALSE	canonical	3	82	junction_16	16.0315731563836	1	101	15	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTACACAGCATTTC	3475	False	NA	NA	False	NA	NA	NA	85243989	85474823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256454_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
43165	chr11	-	4186	25	NNC	ENSMUSG00000020380.17	novel	5153	25	NA	NA	148	-760	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	118.125925922297	1	165	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGACATTTAAACACATT	NA	False	NA	NA	False	NA	NA	NA	53597974	53541105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_53541483_53543060_53543195_53545706_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565817_53566728_53566840_53569696_53569879_53570216_53570341_53570859_53571050_53574039_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
43166	chr4	+	1835	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	-15	0	-15	0	multi-exon	FALSE	canonical	3	73	junction_3	15.369522511198	332	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGTTGGTCCGTTTC	NA	False	NA	NA	False	NA	NA	NA	62204670	62216648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
43167	chr8	-	2162	2	FSM	ENSMUSG00000031516.12	ENSMUST00000123113.2	651	2	-1337	-174	776	-10	multi-exon	FALSE	canonical	3	388	junction_1	0	6	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTTCCCAAATAGCTGC	NA	False	NA	NA	False	NA	NA	NA	34561416	34557586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_34557997_34559664
43168	chr4	+	3500	29	NNC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	42	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	440.986787714525	5	75	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAAGGACGTGTTTCAG	160	False	NA	NA	False	NA	NA	NA	137321107	137383647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137321194_137321614_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362324_137364258_137364299_137365070_137365202_137365466_137365574_137366525_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
43170	chr7	+	2186	16	NIC	ENSMUSG00000051768.10	novel	2155	17	NA	NA	0	-12	intron_retention	FALSE	canonical	3	337	junction_4	31.193731564032	85	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTGTTTGAAGCAACG	NA	False	NA	NA	False	NA	NA	NA	24246622	24272847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
43171	chr11	+	2493	9	NNC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-10	-2	intron_retention	FALSE	canonical	2	12	junction_8	42.8689864587443	5	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGTCTGCTGTCTGGGA	NA	False	NA	NA	False	NA	NA	NA	102992524	103003021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102992615_102993507_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002364
43172	chr6	+	2145	12	NIC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	19	-10	combination_of_known_junctions	TRUE	canonical	2	20	junction_2	241.916589682552	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAACAACTATACA	NA	False	NA	NA	False	NA	NA	NA	124640008	124681371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124640323_124675032_124675141_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
43173	chrX	-	4172	1	FSM	ENSMUSG00000071722.5	ENSMUST00000096367.5	4173	1	-11	12	-11	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	35	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACTATAACCAATAATAG	NA	False	NA	NA	False	NA	NA	NA	94070299	94066127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_94066100_94070300
43174	chr13	-	3774	9	NNC	ENSMUSG00000021464.16	novel	3730	9	NA	NA	115196	-7	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_8	35.4788669492136	144	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTGTGTGTATTAT	NA	False	NA	NA	False	NA	NA	NA	53314498	53263359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_53265705_53267083_53267287_53271170_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53314358
43175	chrX	-	3343	18	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	37	-60	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	216.735547563972	1	169	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTGGATTACATTCTTT	NA	False	NA	NA	False	NA	NA	NA	149800281	149766196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766745_149766913_149767564_149768821_149769183_149770834_149771058_149774131_149774254_149776640_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
43176	chrX	-	2818	6	FSM	ENSMUSG00000041096.14	ENSMUST00000149685.8	2804	6	-20	6	-20	-3	multi-exon	FALSE	canonical	3	155	junction_2	17.9844377170931	113	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGCCTCTTGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	151125441	151119853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123377_151124535
43177	chr8	-	1982	7	NIC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	243.988160004174	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	NA	False	NA	NA	NA	110419916	110397959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110399274_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
43180	chr5	-	2050	15	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	-55	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	277.053851687165	1	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTTGGTAGTGTGTGTT	9045	False	NA	NA	False	NA	NA	NA	137298635	137293992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294583_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295800_137296136_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505
43181	chr10	+	1519	8	NIC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	47	86	intron_retention	FALSE	canonical	3	1673	junction_5	37.0228831609725	82	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTTGGTTGTTCTGTCCC	2336	False	NA	NA	False	NA	NA	NA	79796035	79803531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802561_79803153_79803223_79803304
43182	chr8	+	875	2	FSM	ENSMUSG00000031839.8	ENSMUST00000213037.2	711	2	-14	-150	14	150	multi-exon	FALSE	canonical	3	2011	junction_1	0	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACCCTGAAAACAAGATTC	NA	False	NA	NA	False	NA	NA	NA	120071240	120072430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120071360_120071674
43183	chr8	+	1496	9	NIC	ENSMUSG00000005481.19	novel	1551	12	NA	NA	-210	0	intron_retention	FALSE	canonical	3	2216	junction_4	104.280571057125	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	84446031	84449904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449423_84449515_84449664_84449753
43184	chr2	+	2202	7	NNC	ENSMUSG00000027285.14	novel	3154	6	NA	NA	25	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	104.533354591835	22	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTAATGACTCAAGCTGT	NA	False	NA	NA	False	NA	NA	NA	120439888	120451997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455_120450877_120451759
43185	chr11	-	1684	12	FSM	ENSMUSG00000041895.16	ENSMUST00000047186.10	3338	12	64	1590	64	-1590	multi-exon	FALSE	canonical	1	33	junction_4	24.2817484087354	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTCCCAAAGCGCCTAAG	NA	False	NA	NA	False	NA	NA	NA	109502194	109467547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
43186	chr11	-	1604	1	Genic_Genomic	ENSMUSG00000041895.16	novel	NA	NA	NA	NA	35723	-775	mono-exon	FALSE	NA	NA	NA	NA	NA	7	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTGTGGTCATATATAAA	7238	False	NA	NA	False	NA	NA	NA	109466535	109464931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_109464900_109466500
43187	chr1	+	3652	15	Antisense	novelGene_ENSMUSG00000026709.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	92	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGACACAAACCACATCCA	NA	False	NA	NA	False	NA	NA	NA	160869094	160898181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_160869503_160871184_160871265_160872534_160873047_160874346_160874499_160877506_160877571_160878900_160879009_160881510_160881691_160884030_160884103_160885016_160885120_160887609_160887661_160888304_160888430_160890351_160890448_160890816_160890919_160892794_160892861_160896648
43190	chr9	-	2799	11	FSM	ENSMUSG00000032577.17	ENSMUST00000035194.8	2816	11	2	15	2	-7	multi-exon	FALSE	canonical	3	157	junction_10	23.3752005338992	147	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTTTTCAATGATTCC	NA	False	NA	NA	False	NA	NA	NA	107167074	107132140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
43191	chr9	-	3129	15	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	12	-202	intron_retention	FALSE	non_canonical	0	0	junction_2	90.7996224032426	1	145	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAAATAAAAGTATAATAG	6426	False	NA	NA	False	NA	NA	NA	44272919	44259426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260407_44263888_44264066_44264205_44264409_44264511_44264652_44265133_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267591_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271291_44272751
43192	chr9	+	2984	11	NNC	ENSMUSG00000046603.17	novel	2909	11	NA	NA	22	-1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7.24499827467198	5	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCGTTCCAGGATTTCC	NA	False	NA	NA	False	NA	NA	NA	122634689	122665398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_122634852_122637831_122637902_122640822_122640959_122643496_122643654_122647914_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
43193	chr11	-	1546	11	NIC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	-11	-18	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	205.229627490769	11	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAACCCCTTGAATG	NA	False	NA	NA	False	NA	NA	NA	59730675	59708638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59723709_59723760_59723857_59723971_59727716_59727847_59730495
43195	chr5	+	2371	2	Intergenic	novelGene_831	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGTCTAATTTGAGCATG	651	False	NA	NA	False	NA	NA	NA	115341970	115344397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_115344095_115344150
43196	chr4	+	2944	7	NIC	ENSMUSG00000028861.14	novel	937	8	NA	NA	35	4	intron_retention	FALSE	canonical	3	1282	junction_6	49.8745648825353	23	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGATGGAAGATGGCCTT	NA	False	NA	NA	False	NA	NA	NA	125940804	125949329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125947352_125948753_125948946_125949172
43197	chr1	+	1502	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	36	1	-1	0	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	NA	False	NA	NA	NA	75412609	75419817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
43198	chr14	-	1878	9	NNC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	7	-13	intron_retention	FALSE	non_canonical	0	0	junction_3	1644.32512277074	1	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGTATGGTTTTTATCAA	8732	False	NA	NA	False	NA	NA	NA	52341478	52312271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312870_52313069_52313180_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52336002_52341345
43199	chr11	-	1371	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	191	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6401	False	NA	NA	False	NA	NA	NA	102076077	102053322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102053470_102054309_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
43200	chr10	-	1409	11	Antisense	novelGene_ENSMUSG00000035754.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCGCCCCTGAATCCCA	3720	False	NA	NA	False	NA	NA	NA	79803402	79795985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79796205_79796833_79796945_79800757_79800891_79801040_79801184_79801788_79801954_79802033_79802102_79802175_79802302_79802391_79802555_79802663_79802776_79803151_79803221_79803302
43201	chr8	-	3220	8	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	57539	8	238	-8	3prime_fragment	FALSE	canonical	3	101	junction_4	7.79848232226067	127	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGATGACAGTTGGCCC	NA	False	NA	NA	False	NA	NA	NA	61986637	61964474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387
43202	chr4	-	2747	4	NIC	ENSMUSG00000040025.18	novel	4129	5	NA	NA	5	224	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	439.377590082456	1	100	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCCAGTACCACTTAGTA	NA	False	NA	NA	False	NA	NA	NA	131939411	131913376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_131914259_131931442_131933027_131938062_131938143_131939210
43203	chr3	-	1344	1	NIC	ENSMUSG00000027905.16	novel	2905	11	NA	NA	5545	933	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGGTAAGGAACAGGAA	NA	False	NA	NA	False	NA	NA	NA	105589215	105587871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_105587900_105589200
43205	chr1	-	1903	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	0	13	0	-13	multi-exon	FALSE	canonical	3	107	junction_4	12.5315601582564	216	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGACCGTGTGAGGCC	NA	False	NA	NA	False	NA	NA	NA	66902436	66870010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
43207	chr17	-	2530	9	NNC	ENSMUSG00000060475.14	novel	2060	8	NA	NA	-18	-22	intron_retention	FALSE	non_canonical	0	0	junction_8	260.732022390806	5	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAACATTTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	13211451	13185707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13186939_13188291_13188447_13193623_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195_13211261_13211391
43208	chrX	-	3308	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	27	5	19	2	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	2	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAACTAGCTTGTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	36127872	36112200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
43211	chr17	+	2172	4	ISM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	705	8	153	-4	3prime_fragment	FALSE	canonical	3	1677	junction_2	137.349513609947	8	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTAAACCTTTGAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	29710431	29715078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29710545_29710638_29711006_29712695_29712873_29713563
43212	chr6	-	1523	12	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-1	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3402.01239424234	4	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAATTCTAAAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	51446875	51439758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439929_51440161_51440235_51440390_51440477_51441074_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443294_51443385_51443474_51443686_51443885_51444033_51444164_51444305_51446650
43213	chr7	-	2294	5	NIC	ENSMUSG00000074227.13	novel	1211	6	NA	NA	245	-2	intron_retention	FALSE	canonical	0	0	junction_1	445.694612374886	36	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTACTATGTAGTTTGGT	714	False	NA	NA	False	NA	NA	NA	28981090	28955767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
43214	chr15	-	1808	6	Antisense	novelGene_ENSMUSG00000022386.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGCGTCCAAGCTACGC	NA	False	NA	NA	False	NA	NA	NA	85779221	85763556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_85763658_85766872_85767038_85769283_85769393_85774404_85774529_85776826_85776939_85778024
43215	chr11	+	1322	5	NIC	ENSMUSG00000018286.7	novel	798	6	NA	NA	4	4	intron_retention	FALSE	canonical	3	5742	junction_4	109.33206300075	97	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTGTGTGAAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	70416196	70418479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70418150_70418262
43216	chr11	-	1828	14	NNC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	731.82835799259	2	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTCTTTGGTCCTTGGCTT	5883	False	NA	NA	False	NA	NA	NA	100510493	100473647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480819_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
43217	chr2	+	1513	9	NNC	ENSMUSG00000027469.17	novel	4365	18	NA	NA	-1221	-639	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	286.085842667896	1	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTTGTGGTTTCAGTCA	NA	False	NA	NA	False	NA	NA	NA	152722967	152735935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152722976_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
43218	chr7	-	2294	17	ISM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	313	-5	37	5	3prime_fragment	FALSE	canonical	3	272	junction_5	30.5848588970098	208	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTCTTGGTTTGTTCGG	NA	False	NA	NA	False	NA	NA	NA	27055131	27041552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997
43219	chr12	+	2223	10	NIC	ENSMUSG00000021235.14	novel	1583	12	NA	NA	-1	-5	intron_retention	FALSE	canonical	2	3	junction_7	74.1196896584283	6	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTAGAACTTGTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	84408811	84420557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418177_84419309_84419424_84419592_84420452
43220	chr11	-	2134	9	NIC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	22	-11	combination_of_known_junctions	FALSE	canonical	2	16	junction_7	163.22300695674	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATCTGTAAAGAGCAGAGC	NA	False	NA	NA	False	NA	NA	NA	121245197	121218060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121240057_121240133_121245052
43221	chr6	-	3799	13	NNC	ENSMUSG00000030064.17	novel	4913	24	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_12	12.9871731591854	68	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTTTGGATGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	97289361	97263827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97289287
43222	chr11	+	2337	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	20	0	20	0	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	211	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCTATCACTCTTG	NA	False	NA	NA	False	NA	NA	NA	100465749	100472554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
43223	chr10	+	2919	12	NNC	ENSMUSG00000019952.16	novel	2862	12	NA	NA	-10	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	25.2472075208983	162	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAGATCAATGTCT	NA	False	NA	NA	False	NA	NA	NA	98942954	99033925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028604_99028860_99032487
43224	chr11	-	2360	1	ISM	ENSMUSG00000020846.7	ENSMUST00000021207.7	3512	3	6139	90	6139	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	4	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTTTTAAAATTATCTT	NA	False	NA	NA	False	NA	NA	NA	75912469	75910109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75910100_75912500
43225	chr17	-	1631	6	NNC	ENSMUSG00000077450.14	novel	6109	5	NA	NA	-71	149	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	237.691733133485	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACCACTCAGCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	33979351	33965574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33966420_33966627_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
43226	chr2	-	1568	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	44	0	-4	0	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	917	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4914	False	NA	NA	False	NA	NA	NA	132089683	132081411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
43227	chr2	+	2248	5	NNC	ENSMUSG00000069020.10	novel	2084	2	NA	NA	66	-11	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	142.276798881617	90	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCGAAGCATTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	29717472	29735003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29717630_29722703_29722775_29731413_29731496_29732732_29732782_29733114
43229	chr2	+	1062	5	ISM	ENSMUSG00000027160.17	ENSMUST00000127630.8	2240	8	19448	679	-599	-21	3prime_fragment	FALSE	canonical	2	3	junction_1	226.508691886206	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAACAGTCTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	109867772	109874988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_109867880_109868424_109868622_109870918_109871078_109871605_109871748_109874531
43232	chr7	+	1984	9	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	27003	2	27003	-2	3prime_fragment	FALSE	canonical	3	108	junction_1	7.38135319572231	522	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTTGTGTGTACAGTG	NA	False	NA	NA	False	NA	NA	NA	80791600	80820162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
43233	chr9	+	4142	21	NIC	ENSMUSG00000057193.9	novel	3478	22	NA	NA	45	-16	intron_retention	FALSE	canonical	3	72	junction_20	47.6858469569326	1	177	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCCTCTTGTACAGAGAC	6675	False	NA	NA	False	NA	NA	NA	21232088	21266305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264296
43234	chr17	-	2453	2	NIC	ENSMUSG00000047407.18	novel	1631	3	NA	NA	-2	3	intron_retention	FALSE	canonical	3	373	junction_1	0	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGAAGAGCATTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	71158128	71151202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_71153394_71157866
43235	SIRV6	+	1970	1	FSM	SIRV6A	SIRV603	1969	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	NA	NA	NA	8998	10968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_9000_11000
43236	chr12	+	4528	10	ISM	ENSMUSG00000072825.12	ENSMUST00000179041.8	6565	20	15068	4	24	-4	3prime_fragment	FALSE	canonical	3	42	junction_3	16.9771087709958	67	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGTGACTGCCGCCTCG	NA	False	NA	NA	False	NA	NA	NA	112703695	112713017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_112703766_112704007_112704099_112704272_112705944_112707207_112707446_112709386_112709547_112709836_112709981_112710103_112710193_112710503_112710598_112710956_112711009_112711098
43237	chr11	-	3049	4	FSM	ENSMUSG00000020396.9	ENSMUST00000093369.5	3994	4	938	7	938	-7	multi-exon	FALSE	canonical	3	23	junction_2	3.09120616516523	38	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAACTGTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	4897126	4888760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_4891416_4893850_4893976_4895110_4895311_4897057
43238	chr6	+	2697	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	52	12	-3	-9	multi-exon	FALSE	canonical	3	26	junction_2	2.77263412660235	69	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGTGTAAAGTCCCTGT	9765	False	NA	NA	False	NA	NA	NA	47930375	47942222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
43239	chr10	-	1589	3	NIC	ENSMUSG00000061983.8	novel	494	5	NA	NA	3	2	intron_retention	FALSE	canonical	3	3174	junction_1	275	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663097	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23662779_23662891
43240	chr17	-	577	1	Intergenic	novelGene_142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTCTGTTTCTTTTATC	3326	False	NA	NA	False	NA	NA	NA	35216277	35215700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35215700_35216300
43243	chr11	-	1641	6	FSM	ENSMUSG00000044788.11	ENSMUST00000056153.8	4951	6	-10	3320	-10	-3320	multi-exon	FALSE	canonical	2	4	junction_5	1.6	35	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAGAAGGCACTGCCAGC	419	False	NA	NA	False	NA	NA	NA	115188350	115173767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115174482_115175025_115175206_115176124_115176313_115176943_115177125_115187363_115187531_115188139
43244	chr11	-	2182	1	ISM	ENSMUSG00000044788.11	ENSMUST00000056153.8	4951	6	15683	28	15683	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	26	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAATAAAAATATATTTA	NA	False	NA	NA	False	NA	NA	NA	115172657	115170475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_115170500_115172700
43245	chr1	-	1761	9	ISM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	1	2799	1	-2793	5prime_fragment	FALSE	canonical	3	104	junction_8	55.7492993229511	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAACATAACAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	194813868	194788896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
43246	chr5	+	1170	6	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	1807	2978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGTTTCCTGGCAAATG	659	False	NA	NA	False	NA	NA	NA	138162845	138165886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138163187_138163317_138163429_138164174_138164343_138164946_138165027_138165305_138165700_138165810
43248	chr9	+	1237	11	Antisense	novelGene_ENSMUSG00000023262.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGCAGAGTCAGGACAGG	NA	False	NA	NA	False	NA	NA	NA	106310189	106313997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_106310440_106310555_106310621_106310764_106310846_106311728_106311797_106311882_106312028_106312162_106312368_106312665_106312723_106312812_106312902_106312980_106313058_106313322_106313419_106313893
43249	chr8	+	2288	6	NNC	ENSMUSG00000056820.8	novel	2391	6	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	175.789647021661	1	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCCTCTGGTTAAGCTT	5284	False	NA	NA	False	NA	NA	NA	125739825	125760931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755622_125759235
43251	chr11	-	1094	1	Intergenic	novelGene_2376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGAGCCAGCCTATCTC	NA	False	NA	NA	False	NA	NA	NA	60963764	60962670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_60962700_60963800
43252	chr7	-	2676	3	ISM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	12743	-1386	12709	1386	3prime_fragment	FALSE	canonical	3	230	junction_1	4.5	1	129	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTAGTCGTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	41197510	41193711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_41196224_41197139_41197201_41197407
43253	chr15	+	1135	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	689	104	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140508_80140896
43256	chr14	+	2087	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	17	15	17	-15	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATGTTAAAGTATGACA	NA	False	NA	NA	False	NA	NA	NA	29700310	29715161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
43257	chr15	-	1848	14	NNC	ENSMUSG00000023169.16	novel	3183	16	NA	NA	419	-101	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	152.427846933262	5	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACAGGAGTCACGTCTGC	NA	False	NA	NA	False	NA	NA	NA	96539424	96476515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488331_96490402_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96538934
43258	chr7	-	1134	10	NNC	ENSMUSG00000030751.19	novel	960	10	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	1160.04541205277	2	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875304	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869030_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
43259	chr2	+	1509	12	ISM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	81	5	20	-3	intron_retention	FALSE	canonical	3	758	junction_4	76.2069821750698	78	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATGACTGGTCTCAGTG	NA	False	NA	NA	False	NA	NA	NA	155850045	155860194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716
43260	chrX	+	2401	5	NIC	ENSMUSG00000001131.12	novel	883	6	NA	NA	21	-20	intron_retention	FALSE	canonical	3	578	junction_1	73.7478813254998	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAACTATCAGACAGCA	NA	False	NA	NA	False	NA	NA	NA	20736480	20740952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20736564_20737272_20739096_20739288_20739416_20739606_20739732_20740709
43261	chr11	+	3783	6	ISM	ENSMUSG00000018398.19	ENSMUST00000117061.8	4563	10	16183	1	3932	0	3prime_fragment	FALSE	canonical	3	41	junction_5	24.968780506865	71	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATGGTGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	53426809	53434922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53431856
43262	chr7	-	2777	15	NIC	ENSMUSG00000035401.10	novel	3564	20	NA	NA	-5	324	combination_of_known_splicesites	FALSE	canonical	2	3	junction_12	29.2463149606153	1	74	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGCCAGATGGCACTCC	3729	False	NA	NA	False	NA	NA	NA	98305763	98244007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98297011_98297112_98303950_98304060_98305680
43263	chr5	+	2314	13	FSM	ENSMUSG00000063646.19	ENSMUST00000043794.11	2383	13	62	7	3	-7	multi-exon	FALSE	canonical	3	5	junction_1	48.883080463035	27	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATATTTTGCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37208262	37282636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_37208320_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
43264	chr7	+	1666	2	FSM	ENSMUSG00000038503.16	ENSMUST00000207373.2	815	2	478	-1329	478	1103	multi-exon	FALSE	canonical	3	1312	junction_1	0	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGGTATATTCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	83544738	83548391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83544971_83546957
43265	chr6	-	1999	6	NNC	ENSMUSG00000079477.10	novel	2159	6	NA	NA	5	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	701.370372912914	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACAGCTGCTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	88022175	87976094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87977513_87981152_87981282_87981974_87982118_87989288_87989416_87990619_87990681_88022054
43266	chr5	+	1285	1	FSM	ENSMUSG00000029110.14	ENSMUST00000183265.2	4514	1	1036	2193	1036	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34509495	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_34509500_34510800
43267	chr13	-	1825	15	NNC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	45	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.357959260937	57	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGTTCTTCCTCTCTCA	NA	False	NA	NA	False	NA	NA	NA	55684192	55678230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55678514_55679215_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108
43268	chr6	+	1186	2	FSM	ENSMUSG00000051256.11	ENSMUST00000101070.5	1201	2	8	7	8	-7	multi-exon	FALSE	canonical	3	705	junction_1	0	2481	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGCCTCGTGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	113419537	113425183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113419759_113424218
43269	chr19	-	3204	25	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	-52	-174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	308.120892467551	1	171	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAATAAACTTATAAAATCT	NA	False	NA	NA	False	NA	NA	NA	37340062	37248002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262612_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281403_37287191_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302545_37302717_37306379_37306590_37307869_37308012_37339912
43271	chr12	+	3372	3	NNC	ENSMUSG00000079104.5	novel	1720	2	NA	NA	114	2269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	158.5	1	142	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATATATTATCTTTAACGG	NA	False	NA	NA	False	NA	NA	NA	57277311	57288937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_57277398_57285148_57285406_57285908
43273	chr3	-	2328	18	NIC	ENSMUSG00000027882.19	novel	2419	19	NA	NA	-22	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	29.8268358765777	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTCTGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108747864	108700494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
43274	chr4	-	4704	23	ISM	ENSMUSG00000039936.19	ENSMUST00000105688.10	4335	25	24458	-642	47	-4	3prime_fragment	TRUE	canonical	2	8	junction_22	4.63814582502695	37	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAAGTTCTTGGCTCAA	NA	False	NA	NA	False	NA	NA	NA	149758604	149733631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_149735235_149736221_149736355_149736683_149736830_149737067_149737192_149737767_149737936_149738263_149738343_149738479_149738593_149738681_149738861_149738974_149739075_149739272_149739417_149739583_149739706_149739792_149739961_149740037_149740089_149740837_149740969_149741060_149741158_149741702_149741925_149742838_149742929_149743168_149743319_149743427_149743608_149744149_149744380_149744458_149744688_149747600_149747774_149758532
43275	chr10	+	1250	7	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	25	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2634.85418108015	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTCTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	126899509	126903154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900273_126900446_126900590_126900703_126900872_126901023_126901134_126901936_126902106_126902797
43276	chr5	-	2684	8	Intergenic	novelGene_686	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGACTCTCCTCCCTAAA	NA	False	NA	NA	False	NA	NA	NA	32650093	32616690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_32616752_32635412_32635541_32638032_32638265_32640703_32640821_32642611_32642673_32643222_32643375_32644912_32645048_32648295
43277	chr10	+	1424	9	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	2534.75643553774	1	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTTATTTTTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	126899473	126903157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900869_126901023_126901134_126901821_126901873_126901969_126902106_126902456_126902534_126902797
43278	chr1	-	1629	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	39	-347	6	347	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	1570	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAGCCGTAAGGTGCGT	NA	False	NA	NA	False	NA	NA	NA	186481516	186452827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
43279	chr3	-	1699	10	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	10	39	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	861.8286902616	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTCTCTGCTGGGTCTC	NA	False	NA	NA	False	NA	NA	NA	108352504	108333888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341452_108344824_108344896_108352312
43280	chr9	-	2776	13	NNC	ENSMUSG00000032015.17	novel	2522	13	NA	NA	5513	2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	21.2895057611856	114	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGTTCAGAGGAGTGTT	5134	False	NA	NA	False	NA	NA	NA	43111539	43035231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43111185
43281	chr7	-	1694	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	27	14	-6	-4	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	664	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGATAGTGGGCATGTGA	9068	False	NA	NA	False	NA	NA	NA	45045139	45025890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
43282	chr3	+	1882	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	-9	1035	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	33.6964389809962	91	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	135053780	135099879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
43283	chr3	+	2577	19	Fusion	ENSMUSG00000068917.13_ENSMUSG00000028049.16	novel	2154	13	NA	NA	82	-3	multi-exon	FALSE	canonical	3	36	junction_11	358.64515717549	2	58	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACTCACCCATTTCCTG	NA	False	NA	NA	False	NA	NA	NA	89072367	89090067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_89072414_89074341_89074512_89076001_89076231_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
43284	chr15	-	1266	11	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	829.504695586469	12	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2656	False	NA	NA	False	NA	NA	NA	43146122	43113453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43134270_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
43285	chr9	+	1270	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-12	-188	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8216.50854986472	2	60	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGACCGCATATTTCAATA	NA	False	NA	NA	False	NA	NA	NA	64080644	64085760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080691_64082093_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084765_64085178_64085300_64085504
43286	chr8	+	1931	5	FSM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	-5	7	-5	-7	multi-exon	FALSE	canonical	2	515	junction_4	131.476946648452	538	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCGCCCATCCTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	71921837	71928735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926481_71927131
43287	chr7	+	2711	11	FSM	ENSMUSG00000031016.10	ENSMUST00000033326.10	3419	11	702	6	702	-6	multi-exon	TRUE	canonical	3	352	junction_6	26.6084573021436	16	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTAATTGTCTAAATCTTC	NA	False	NA	NA	False	NA	NA	NA	109721954	109742487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109722133_109723662_109723869_109725013_109725075_109725202_109725376_109725907_109726030_109730035_109730183_109733961_109734058_109734844_109734931_109738355_109738527_109738768_109738915_109741162
43289	chr18	+	2301	16	NNC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-40	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	69.2439808856256	10	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACATGTGACTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	75151811	75420033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75238937_75239010_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
43290	chr17	-	1848	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	73	7944	11	-13	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	2	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTGTTTAGTACATAAAG	NA	False	NA	NA	False	NA	NA	NA	30831560	30811853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
43291	chr5	-	1555	13	NNC	ENSMUSG00000029145.13	novel	2025	13	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	181.34196900393	3	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGACTCTGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	31350373	31344910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348944_31349092_31349496_31349633_31349925_31349970_31350336
43292	chrX	-	2622	4	NIC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-195	-2355	intron_retention	FALSE	canonical	3	1261	junction_3	107.715675120507	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAGAATGGTGAACAGCAA	NA	False	NA	NA	False	NA	NA	NA	158912156	158907559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_158909258_158910286_158910359_158910568_158910725_158911460
43293	chr19	+	2284	9	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	81.7288772405445	270	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGGGTCTGTGCCGTG	4257	False	NA	NA	False	NA	NA	NA	46345377	46363693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360311_46360547_46360620_46360815_46362884
43294	chr8	-	1556	11	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	4	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.384972834162	71	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTTAGTATTATACTT	NA	False	NA	NA	False	NA	NA	NA	83500770	83490270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_83490734_83490812_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
43296	chr5	-	2978	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	86	177	12	-9	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	5	112	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTTGAATGAGCGACAT	NA	False	NA	NA	False	NA	NA	NA	64126154	64066416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
43298	chr12	+	2342	10	NNC	ENSMUSG00000055884.9	novel	563	3	NA	NA	-5102	224	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	38.5140666943045	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTGATGGAGTGGCCCC	NA	False	NA	NA	False	NA	NA	NA	65159903	65177564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_65159959_65160547_65160634_65160729_65160793_65163106_65163239_65165057_65165215_65167250_65167358_65168303_65168865_65171587_65171961_65173288_65173581_65177048
43299	chr1	-	1790	15	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	6432	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	466.381949102857	1	73	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACTCCTTGCGTAGCTG	NA	False	NA	NA	False	NA	NA	NA	78459000	78401726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435285_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444703_78447697_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944
43300	chr9	+	2232	8	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	1	0	intron_retention	FALSE	canonical	3	128	junction_5	19.5740352800044	51	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGAGTGAGGCGTGTT	NA	False	NA	NA	False	NA	NA	NA	108447109	108449972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448719_108448811_108448874_108448980_108449661_108449749
43301	chr6	+	1961	14	NNC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-1	-50	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	183.699007737622	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCGTTTAAAAAAAAAAAAAA	12	True	NA	NA	False	NA	NA	NA	30048026	30140853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214_30140271_30140583
43303	chr19	+	1665	1	Intergenic	novelGene_1267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	84	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGTCTACATACAGAT	NA	False	NA	NA	False	NA	NA	NA	41513743	41515408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41513700_41515400
43304	chr2	-	2066	15	NNC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-1	29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	43.9844592221074	2	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACCCTGGCTATTTGGTA	NA	False	NA	NA	False	NA	NA	NA	12424222	12352413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410853_12414811_12414892_12423969
43305	SIRV6	+	901	9	FSM	SIRV6A	SIRV605	1088	9	-43	230	0	133	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAGTCTTGTAATTAT	NA	False	NA	NA	False	NA	NA	NA	1087	11101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
43306	chrX	-	3092	2	NNC	ENSMUSG00000055780.11	novel	4120	8	NA	NA	46897	2877	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCATTGACTCAATAGTT	NA	False	NA	NA	False	NA	NA	NA	50843124	50839958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_50842494_50842567
43307	chr2	+	3527	5	FSM	ENSMUSG00000026730.13	ENSMUST00000134794.8	3571	5	42	2	33	-2	multi-exon	FALSE	canonical	2	8	junction_1	18.3490462967425	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAGAGTCTAAATGTATT	4805	False	NA	NA	False	NA	NA	NA	12928944	13008264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_12929010_12982970_12983429_12985103_12985370_12999560_12999702_13005667
43309	chr11	+	1426	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	-25	3	-2	-3	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	999	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTGGCTCTCTATTTGT	NA	False	NA	NA	False	NA	NA	NA	88095211	88102330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
43310	chrX	+	1076	5	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5140.90018260421	1	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060623_36060786_36060983_36061388_36061530_36062039
43311	chr10	-	1320	9	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2117	3699	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGGCGCGCGGAAACCC	2820	False	NA	-4	True	NA	NA	NA	126903152	126899449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_126899627_126900086_126900322_126900452_126900588_126900701_126900871_126901022_126901134_126901821_126901870_126901967_126902109_126902799_126902929_126902977
43312	chr13	-	2654	6	NIC	ENSMUSG00000074863.6	novel	559	6	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	87.9377052236411	44	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCTGGTTCCTGGGAAA	6808	False	NA	NA	False	NA	NA	NA	62860567	62819601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_62821755_62823062_62823124_62823332_62823469_62853514_62853576_62853943_62854071_62860451
43313	chr9	+	4036	18	NNC	ENSMUSG00000038535.18	novel	4200	21	NA	NA	-10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	25.5130063851693	1	170	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGATTCCTGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	72202559	72271053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72202605_72203256_72203295_72205967_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238149_72238456_72238574_72238716_72242328_72242392_72246027_72246151_72269266
43314	chr9	-	1616	11	FSM	ENSMUSG00000062270.15	ENSMUST00000191189.7	1223	11	93	-486	8	2	multi-exon	FALSE	canonical	3	6	junction_7	2089.62901970661	2	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996704	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89984352_89984440_89989287_89989356_89992178_89992226_89996588
43315	chr4	+	1824	4	NIC	ENSMUSG00000038827.12	novel	522	6	NA	NA	-35	-47	intron_retention	FALSE	canonical	3	125	junction_2	12.7104506432917	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTGAATGAAAACATTCTT	-9	True	NA	NA	False	NA	NA	NA	56802582	56805900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_56802727_56803595_56803648_56804153_56805759_56805877
43318	chr4	-	2745	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	-1300	0	1300	multi-exon	FALSE	canonical	3	55	junction_1	0	180	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGGGCTGTGAGCCTCG	4504	False	NA	NA	False	NA	NA	NA	127247874	127243578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127246275_127247825
43320	chr2	-	2483	2	ISM	ENSMUSG00000039483.11	ENSMUST00000148036.7	2792	5	2536	3	1776	-3	intron_retention	FALSE	canonical	3	107	junction_1	0	18	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTGTGTCTTTGTATG	4297	False	NA	NA	False	NA	NA	NA	30715730	30713111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_30714517_30714652
43321	chr15	-	1717	13	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	-67	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	647.464327631689	1	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATAAAATTTCATTCCC	4968	False	NA	NA	False	NA	NA	NA	77852790	77843229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846127_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851635_77852620
43322	chr5	-	2161	5	NIC	ENSMUSG00000004849.15	novel	1353	5	NA	NA	122	-5	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	330.446194561233	1213	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTTTGCCTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	137074774	137063851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137073833
43323	chr6	-	1760	12	NNC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_5	138.697363629183	1	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACCTGAGCCTGTTGTTG	6988	False	NA	NA	False	NA	NA	NA	88818858	88812899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815682_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
43324	chr14	-	1256	6	NNC	ENSMUSG00000015759.12	novel	789	6	NA	NA	18	-103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	210.694660587306	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGCTGTGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47025773	47013126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47013871_47013954_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
43325	chr5	-	1835	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	30	3	25	-2	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	84	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTCTTTGCCTATTTTCC	NA	False	NA	NA	False	NA	NA	NA	110928432	110921535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
43326	chr1	+	2848	9	FSM	ENSMUSG00000026179.15	ENSMUST00000087225.6	2859	9	11	0	11	0	multi-exon	FALSE	canonical	3	63	junction_1	11.428445869846	82	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTCTGAGCTCTCAAT	9374	False	NA	NA	False	NA	NA	NA	74371779	74392845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
43328	chr19	-	2849	17	NIC	ENSMUSG00000025041.18	novel	3728	18	NA	NA	0	348	intron_retention	FALSE	canonical	3	118	junction_5	16.2788205960997	3	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCAGTTTTGTGTATCT	7192	False	NA	NA	False	NA	NA	NA	46950747	46877098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
43329	chr11	+	2497	4	NNC	ENSMUSG00000018599.6	novel	2522	4	NA	NA	79	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	65.576079649688	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATGTGTAATTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	60619349	60623776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60619394_60621108_60621619_60621741_60623535_60623626
43331	chr17	-	5091	1	ISM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	17693	8	16953	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	106	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCAAATTGGTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	32989568	32984477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_32984500_32989600
43333	chr3	+	841	1	Genic_Genomic	ENSMUSG00000054199.19	novel	NA	NA	NA	NA	10034	810	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATATATATATCTCTTAT	NA	False	NA	NA	False	NA	NA	NA	88807775	88808616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_88807800_88808600
43334	chr10	-	1550	10	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_9	143.298789980504	1102	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5762	False	NA	NA	False	NA	NA	NA	62859692	62851206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859416
43335	chr5	+	2668	12	FSM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	34	0	-2	0	multi-exon	FALSE	canonical	3	87	junction_5	9.63207451716048	187	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGGGCTGTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	122845640	122867801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
43336	chr14	-	1007	2	Intergenic	novelGene_511	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	178	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTCTGACAAGGTACATC	5700	False	NA	NA	False	NA	NA	NA	7802612	7799399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_7799485_7801690
43337	chr14	-	1517	3	Intergenic	novelGene_510	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	1.5	18	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAATCGAAAAAAAA	9149	False	NA	NA	False	NA	NA	NA	7799163	7785982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_7787204_7788384_7788522_7799004
43338	chrX	+	2321	5	FSM	ENSMUSG00000002014.13	ENSMUST00000130738.8	2119	5	-212	10	-16	-10	multi-exon	FALSE	canonical	3	1319	junction_4	120.079921302439	6	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATTTGACATGAGTACA	5416	False	NA	NA	False	NA	NA	NA	72830617	72834407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
43339	chrX	+	1661	8	NNC	ENSMUSG00000031349.5	novel	2168	8	NA	NA	7	-382	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	135.568342581165	8	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAGACTCTGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	71962169	72001738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_71962300_71969899_71970021_71973351_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
43340	chr10	+	2309	3	ISM	ENSMUSG00000038280.13	ENSMUST00000040718.6	3006	6	17336	0	17286	0	3prime_fragment	FALSE	canonical	3	214	junction_2	4	85	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATGTTGTAATTGAAT	NA	False	NA	NA	False	NA	NA	NA	42572247	42578455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_42572414_42574103_42574270_42576478
43341	chr19	-	2427	4	NNC	ENSMUSG00000006456.11	novel	3165	3	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	180.743526086613	4	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTGTCATTGTCTTGA	7769	False	NA	NA	False	NA	NA	NA	4861658	4850949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4851834_4852578_4853465_4853845_4854044_4861199
43342	chr4	+	1778	7	FSM	ENSMUSG00000006392.17	ENSMUST00000084319.11	1134	7	20	-664	1	-7	multi-exon	FALSE	canonical	3	157	junction_2	198.998673920763	72	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATGTTCCCTGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	118266553	118272972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
43343	chr11	+	1952	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	52	2	-47	1	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	16	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCTCCTTGTCCTATTT	2369	False	NA	NA	False	NA	NA	NA	69886654	69890833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
43344	chr10	+	1575	9	NIC	ENSMUSG00000035351.17	novel	1277	10	NA	NA	-5	4	intron_retention	FALSE	canonical	3	51	junction_1	176.002086280248	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCCTATTGTGTTGGTG	NA	False	NA	NA	False	NA	NA	NA	87982961	88014256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010796_88012934_88013029_88013995
43345	chr1	+	2083	14	NNC	ENSMUSG00000073652.11	novel	426	3	NA	NA	-23049	-4097	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	63	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCAGCGCAGCGGGTGC	NA	False	NA	NA	False	NA	NA	NA	71668946	71692307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_71669002_71671199_71671321_71676409_71676555_71677615_71677747_71679467_71679607_71680313_71680488_71681110_71681291_71682118_71682295_71684703_71684862_71687167_71687307_71688392_71688485_71689720_71689861_71690682_71690799_71691990
43346	chr5	+	1616	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	490	-466	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1575.77811717139	1	80	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGATTGGAGAAAAGAAACG	NA	False	NA	NA	False	NA	NA	NA	129864551	129874746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867741_129868532_129868644_129868850_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
43348	chr5	+	1401	11	NNC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	401.194915222015	788	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTGCTATGCTTAATTG	NA	False	NA	NA	False	NA	NA	NA	134611620	134627181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_134611741_134615751_134615822_134617785_134617818_134618237_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
43349	chr13	+	2534	13	NNC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	35.5296237901088	1	57	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119599306	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608702_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
43351	chr17	-	3261	8	NIC	ENSMUSG00000040097.17	novel	2943	7	NA	NA	10	-9	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	24.7831410768016	57	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTACAGAGCTGCTGTGTG	7615	False	NA	NA	False	NA	NA	NA	23990486	23971775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_23972838_23974627_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
43352	chr11	-	1831	10	NNC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	9	38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	61.8889886294828	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGTATATGTATCTGT	NA	False	NA	NA	False	NA	NA	NA	87295323	87269378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87270011_87270193_87270314_87271657_87271719_87279440_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
43353	chr10	+	1987	11	NNC	ENSMUSG00000044475.15	novel	1473	11	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	72.0639299511205	8	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	59839091	59935808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_59839698_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
43354	chr6	+	2115	7	NNC	ENSMUSG00000004264.18	novel	2373	8	NA	NA	-45	-8	intron_retention	FALSE	non_canonical	0	0	junction_6	1001.99850299289	23	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAAAATTTTGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	124689253	124693905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124692127_124692544_124692623_124692916_124692999_124693568
43355	chr14	-	2178	5	NNC	ENSMUSG00000021848.17	novel	1033	5	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	19.6389281784928	4	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTTGGGTCTAGTTTA	NA	False	NA	NA	False	NA	NA	NA	48904979	48895137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_48896784_48898755_48898908_48899900_48900117_48904656_48904726_48904884
43356	chr7	+	1316	9	NIC	ENSMUSG00000053898.13	novel	1267	10	NA	NA	-17	-92	intron_retention	FALSE	canonical	3	645	junction_5	36.0104151600617	11	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATGGGGTGTCCCAGT	NA	False	NA	NA	False	NA	NA	NA	28524756	28531580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28531293_28531428
43358	chr10	-	2109	3	FSM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	12	1600	12	1235	multi-exon	FALSE	canonical	3	75	junction_2	17	229	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAATTTCTTTGATGGC	NA	False	NA	NA	False	NA	NA	NA	128383631	128379431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128381408_128382696_128382761_128383562
43359	chr4	-	1889	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	26	282	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	27.6204433144888	463	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGTTTGTCTAAGTGTA	NA	False	NA	NA	False	NA	NA	NA	116413106	116408547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116409420_116410082_116410927_116411964_116412101_116413069
43360	chr14	+	3185	3	NIC	ENSMUSG00000007817.16	novel	7482	24	NA	NA	92	-855	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	28	1	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACGGAAGCCCTAAATCCC	421	False	NA	NA	False	NA	NA	NA	25657345	25666312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_25657415_25658530_25658698_25663363
43361	chr5	+	1625	3	NIC	ENSMUSG00000040532.15	novel	1466	4	NA	NA	-17	0	intron_retention	FALSE	canonical	3	552	junction_2	18.5	1622	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	NA	False	NA	NA	NA	135038527	135041024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135038972_135039740_135040235_135040337
43364	chr6	+	3306	11	Antisense	novelGene_ENSMUSG00000030064.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAATAGCTAAAAGAAAT	5557	False	NA	NA	False	NA	NA	NA	97268118	97287691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_97269457_97272537_97273352_97275000_97275118_97277171_97277317_97279249_97279309_97282109_97282336_97283438_97283552_97283628_97283779_97284991_97285127_97285572_97285713_97287622
43365	chr13	-	2620	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	105	11	95	-11	multi-exon	FALSE	canonical	0	0	junction_5	22.4152725712726	66	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTTATATTAAATTGGAA	NA	False	NA	NA	False	NA	NA	NA	12476279	12454315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
43369	chr11	+	2005	1	ISM	ENSMUSG00000085208.4	ENSMUST00000128960.2	4423	2	6166	1652	6153	-1652	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCGATCTCCGTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	86098361	86100366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_86098400_86100400
43370	chr14	-	2052	6	NIC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_5	133.851260733696	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5201	False	NA	NA	False	NA	NA	NA	55880802	55873421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880207_55880636
43371	chr7	+	1444	8	NNC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2234.80068964751	1	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTGCCAGACCTCTTC	NA	False	NA	NA	False	NA	NA	NA	142606544	142621667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_142606804_142616229_142616345_142618945_142619028_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
43372	chr4	-	2475	3	NIC	ENSMUSG00000059291.16	novel	397	4	NA	NA	20	-11	intron_retention	FALSE	canonical	3	6976	junction_2	1799	25	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAATGCATGTTACAGT	NA	False	NA	NA	False	NA	NA	NA	135780684	135777268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135778614_135778924_135780029_135780658
43373	chr15	+	2536	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	39	2	39	-2	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	399	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTGGAATCACCAATGCC	88	False	NA	NA	False	NA	NA	NA	10981880	10996710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
43374	chr8	-	2368	8	NIC	ENSMUSG00000031816.16	novel	1366	10	NA	NA	0	-7	intron_retention	FALSE	canonical	2	6	junction_7	25.6117001324291	3	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTAAGCTGCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	121835049	121824302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121834932
43375	chr7	+	2962	14	NNC	ENSMUSG00000004056.16	novel	4544	14	NA	NA	-22	-1	intron_retention	FALSE	non_canonical	0	0	junction_7	237.648863343633	1	139	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCAGTCCACATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	27291148	27338877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331903_27332623_27332693_27333986_27334110_27335463_27335577_27335688_27335894_27336347_27336436_27336516_27336616_27337486
43376	chr4	+	1482	4	FSM	ENSMUSG00000028797.21	ENSMUST00000173937.8	756	4	-14	-712	-3	0	multi-exon	FALSE	canonical	3	12	junction_2	291.296336323606	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3173	False	NA	NA	False	NA	NA	NA	129494469	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129494525_129494775_129495037_129500879_129500973_129501248
43377	chr7	-	1390	8	NIC	ENSMUSG00000001794.14	novel	1600	12	NA	NA	-30	0	intron_retention	FALSE	canonical	3	1491	junction_7	76.3271690467679	474	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	29892427	29886366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29892018_29892291
43378	chr10	+	4562	5	FSM	ENSMUSG00000020044.14	ENSMUST00000020234.14	4722	5	157	3	-25	-3	multi-exon	FALSE	canonical	2	3	junction_1	4.15331193145904	44	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACCTGCTGTCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	86136392	86185367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_86136839_86174236_86174320_86179796_86179909_86180417_86180540_86181568
43379	chr2	-	3691	13	NIC	ENSMUSG00000027071.15	novel	1812	12	NA	NA	49	1898	combination_of_known_junctions	FALSE	canonical	2	3	junction_11	7.59751421336099	37	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATACTGTGGTTTACTC	NA	False	NA	NA	False	NA	NA	NA	84863605	84827028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84862864_84862892_84863344
43382	chr11	-	2106	14	NNC	ENSMUSG00000020717.20	novel	2977	16	NA	NA	-8282	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	552.65401612443	1	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCCCAATTTGTCCAGG	NA	False	NA	NA	False	NA	NA	NA	106590455	106552636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106572781_106572860_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417
43386	chr5	+	2022	4	FSM	ENSMUSG00000014956.16	ENSMUST00000202078.2	383	4	75	-1714	75	-3	multi-exon	FALSE	canonical	0	0	junction_1	632.928291532479	27	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGTCTGAGTGATTATTC	3149	False	NA	NA	False	NA	NA	NA	32616640	32650097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_32616752_32640769_32640809_32642602_32642675_32648297
43387	chr15	+	1449	11	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-22	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	556.374343405589	38	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959425	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968459_78973753_78974162_78977536_78977618_78978400
43388	chr8	+	885	1	Intergenic	novelGene_1757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGCCCTAGTCTCGAA	NA	False	NA	NA	False	NA	NA	NA	111764732	111765617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_111764700_111765600
43389	chr8	+	958	1	Intergenic	novelGene_1756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAAGGTTTTATATAT	NA	False	NA	NA	False	NA	NA	NA	111763729	111764687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_111763700_111764700
43392	chr2	-	3440	9	NIC	ENSMUSG00000035778.18	novel	3606	9	NA	NA	800	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_8	26.4548554144603	1	99	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGGTCTGGTATGGAT	NA	False	NA	NA	False	NA	NA	NA	35352443	35290192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35352356
43393	chr11	-	1244	5	NIC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-3	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	9293.80711818359	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCAGTTGTTTATTT	9938	False	NA	NA	False	NA	NA	NA	69812215	69807542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69808168_69808253_69808328_69808422_69808555_69809976_69810163_69811988
43395	chr2	-	3807	6	FSM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	21	5	-6	-5	multi-exon	FALSE	canonical	3	53	junction_4	7.56306816047562	74	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTCTGTCGTGTGAATG	NA	False	NA	NA	False	NA	NA	NA	102016709	101780552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943877_101944025_102016624
43396	chr14	+	2277	2	FSM	ENSMUSG00000021967.5	ENSMUST00000022538.5	2877	2	20	580	20	-580	multi-exon	FALSE	canonical	3	956	junction_1	0	2921	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAAGTAAAATAATTTATA	NA	False	NA	NA	False	NA	NA	NA	58063710	58066173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_58063780_58063965
43398	chr8	-	3508	1	Intergenic	novelGene_1595	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1134	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCTGTCCCCAGCAGG	NA	False	NA	NA	False	NA	NA	NA	21132974	21129466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_21129500_21133000
43399	chr12	-	831	5	NNC	ENSMUSG00000056458.17	novel	1132	7	NA	NA	1	-4166	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.7424413289906	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCAGAGACTTTCCGACC	7673	False	NA	NA	False	NA	NA	NA	110807360	110785441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110785812_110792871_110792947_110794474_110794565_110800559_110800675_110807179
43400	chr3	+	1511	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-24	1	-24	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	5416	False	NA	NA	False	NA	NA	NA	54388834	54390345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54388800_54390300
43402	chr5	+	2538	5	NNC	ENSMUSG00000041264.17	novel	3604	9	NA	NA	0	1	intron_retention	FALSE	non_canonical	0	0	junction_3	171.273720984861	2	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTTTGTTGGTTTCATT	NA	False	NA	NA	False	NA	NA	NA	149121476	149152239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149121617_149125154_149125284_149130649_149130763_149146532_149146611_149150161
43403	chr17	+	1784	8	NIC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	-21	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	85.9679579606167	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTGGCAAGTGTTTAC	NA	False	NA	NA	False	NA	NA	NA	12338194	12438528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12434162_12434239_12435580_12435780_12437871
43404	chr18	-	2638	17	NNC	ENSMUSG00000024613.17	novel	3229	20	NA	NA	2	-3720	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	376.092611392128	1	107	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGACGCCCGCAGCCCTC	NA	False	NA	NA	False	NA	NA	NA	60981999	60954821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971928_60972643_60972706_60976297_60976444_60978882_60978939_60981822
43406	chr11	+	2780	28	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-2	78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	166.48262266325	1	121	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATTTAATTGGGAGGAG	NA	False	NA	NA	False	NA	NA	NA	29080745	29111906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29089999_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
43409	chr1	-	1726	13	NNC	ENSMUSG00000026034.18	novel	1796	13	NA	NA	38	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	72.8148336535901	6	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGGTCTATAGCTTGG	NA	False	NA	NA	False	NA	NA	NA	58463187	58451160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453814_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
43410	chr16	+	1858	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	28	-2	-14	2	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	304	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGCCTTTGTGTAGCGT	NA	False	NA	NA	False	NA	NA	NA	87151100	87165632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
43411	chr4	+	1656	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	807.381312226963	202	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2947	False	NA	NA	False	NA	NA	NA	128887094	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892926_128893053_128895943_128896008_128896166_128896262_128901505_128901579_128901826_128902023_128904355
43412	chr6	+	1183	10	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	54	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1130.9025675468	5	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAAAATTTTGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	124689352	124693905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124690976_124691047_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692999_124693568
43413	chr11	-	1903	7	NIC	ENSMUSG00000007646.14	novel	3944	9	NA	NA	0	33	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	54.6595523826043	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTGTGTGTATATGTA	NA	False	NA	NA	False	NA	NA	NA	87295349	87269383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_87270314_87271657_87271719_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
43415	chr7	+	1995	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	20	0	-16	0	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	356	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCTGTCTGGGATCATT	NA	False	NA	NA	False	NA	NA	NA	144468891	144474871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
43416	chr18	-	3517	16	NNC	ENSMUSG00000052026.9	novel	3366	14	NA	NA	94	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	7.09177927838517	65	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCGTCATCTTTACCTGA	NA	False	NA	NA	False	NA	NA	NA	61147184	61128460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61129904_61133493_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135511_61136312_61136438_61136558_61136639_61136804_61136973_61137460_61137596_61138783_61138901_61140446_61140682_61140787_61140920_61141020_61141169_61142493_61142678_61147048
43417	chr16	+	1955	12	NIC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	52	junction_2	122.971810248132	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTAGTTTGATATGGTA	NA	False	NA	NA	False	NA	NA	NA	18631052	18654005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
43421	chr1	-	5880	1	ISM	ENSMUSG00000026384.14	ENSMUST00000064091.12	10874	27	179264	3	29288	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	37	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGACTTCGTTTCAAGGT	NA	False	NA	NA	False	NA	NA	NA	119586079	119580199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_119580200_119586100
43422	chr12	+	2391	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	25	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	311.25592363841	3	97	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGGAAAGGTCTGCTGAG	NA	False	NA	NA	False	NA	NA	NA	86516915	86568383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561177_86566103_86566952_86567766
43423	chr8	-	2989	12	NNC	ENSMUSG00000069920.11	novel	2325	2	NA	NA	2200	13474	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	62	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCCTATGCTAGCAAATAC	9819	False	NA	NA	False	NA	NA	NA	105979583	105965795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_105966381_105966607_105966703_105967470_105967571_105967658_105967766_105973046_105973185_105973467_105973554_105974726_105974809_105975370_105975419_105976049_105976093_105976226_105976285_105977130_105977421_105978226
43424	chr16	-	3325	11	Antisense	novelGene_ENSMUSG00000053774.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	57	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTCCCTCCCCCACTCC	NA	False	NA	NA	False	NA	NA	NA	32205560	32151059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32151178_32171615_32171765_32178825_32178892_32186159_32186228_32188132_32188245_32191209_32191357_32194042_32194134_32194712_32194842_32200077_32200473_32200582_32200663_32203590
43427	chr19	-	1430	8	NNC	ENSMUSG00000010095.14	novel	1393	8	NA	NA	8	17	at_least_one_novel_splicesite	FALSE	canonical	3	127	junction_7	1064.97494461281	246	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	8690341	8684933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689321_8690093
43428	chr7	-	1615	8	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-104	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.291128560247	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGCTTTCAAAACGAGAA	NA	False	NA	NA	False	NA	NA	NA	99002321	98994705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995246_98995296_98995396_98995592_98995630_98996131_98996365_98996472_98996572_98998009_98998492_98998608_98998672_99002259
43429	chr11	-	3100	24	ISM	ENSMUSG00000008855.18	ENSMUST00000124077.8	3872	28	23206	-2	-6117	0	3prime_fragment	TRUE	canonical	1	78	junction_13	38.1393326587156	111	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACGTGTGCCGTGTGGGTC	3560	False	NA	NA	False	NA	NA	NA	102097759	102086572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102086695_102086777_102086944_102087063_102087149_102087364_102087499_102087884_102088004_102088164_102088263_102088491_102088612_102089622_102089711_102089830_102089887_102090191_102090300_102090461_102090512_102090794_102090916_102091225_102091360_102092058_102092231_102092878_102093161_102093369_102093582_102095256_102095480_102095657_102095790_102096109_102096223_102096310_102096458_102096615_102096747_102097247_102097363_102097455_102097601_102097732
43430	chr19	-	1711	12	ISM	ENSMUSG00000025041.18	ENSMUST00000236727.2	2920	17	4915	3161	4915	-1823	internal_fragment	FALSE	canonical	3	118	junction_1	14.1987078913936	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACGACACAGTCAGAACGG	NA	False	NA	NA	False	NA	NA	NA	46912749	46879269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700
43431	chr10	+	3345	3	Antisense	novelGene_ENSMUSG00002076916.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAGCCGCGCGCAGGTCG	NA	False	NA	NA	False	NA	NA	NA	86536189	86541324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_86537893_86538772_86540260_86541169
43432	chr2	+	2016	12	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	106.160567612002	8	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	NA	False	NA	NA	NA	162859375	162888061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_162859454_162864294_162864420_162865269_162865358_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
43433	chr6	-	3955	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	21	6	-7	-6	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	416	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATACTACCTGGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	83808702	83782388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
43435	chr15	+	3213	17	NNC	ENSMUSG00000022142.9	novel	4391	34	NA	NA	0	1061	intron_retention	FALSE	canonical	0	0	junction_2	63.8853648635585	1	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTTTACTTGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	8138819	8165479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_8139087_8141766_8141905_8143170_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146
43436	chr4	-	2420	8	NNC	ENSMUSG00000028232.14	novel	2690	8	NA	NA	4152	-236	intron_retention	FALSE	non_canonical	0	0	junction_4	33.6427813162627	2	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCTAGTAAAAATGTTAT	4758	False	NA	NA	False	NA	NA	NA	3570375	3549276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3550580_3551751_3551892_3554353_3554415_3555805_3555927_3560498_3560693_3564092_3564258_3569363_3569753_3570328
43438	chr2	+	2683	23	NNC	ENSMUSG00000027411.18	novel	655	6	NA	NA	615	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	134.776130571778	1	134	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGTTGTTGTATGCTGT	NA	False	NA	NA	False	NA	NA	NA	130266938	130285651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130267087_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282523_130282811_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
43439	chr15	+	1203	6	ISM	ENSMUSG00000022546.6	ENSMUST00000023203.6	1792	11	-274	1319	-273	323	5prime_fragment	FALSE	canonical	1	2	junction_1	2.65329983228432	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATGGCTGATGAGGTACA	4237	False	NA	NA	False	NA	NA	NA	76580658	76582567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76581220_76581358_76581449_76581521_76581631_76581741_76581876_76582039_76582284_76582502
43440	chr19	-	1014	2	ISM	ENSMUSG00000036748.17	ENSMUST00000236046.2	1167	10	6962	4	410	-2	intron_retention	FALSE	canonical	3	995	junction_1	0	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGTATATGCTCATTCT	8357	False	NA	NA	False	NA	NA	NA	46320085	46318986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_46319274_46319358
43442	chr19	+	1588	10	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	6	junction_9	212.641993227938	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3611	False	NA	NA	False	NA	NA	NA	4198653	4204034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203595
43445	chr10	+	2382	14	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-56	-5	intron_retention	FALSE	canonical	0	0	junction_2	122.486806438405	1	85	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGCTGCGGGAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	75399925	75421987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411917_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75421120_75421220_75421334_75421424_75421539_75421714
43446	chr9	+	994	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6734.01236489897	130	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGGTGACAAACCCTTGT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082231_64083464_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
43448	chr2	+	2100	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	19	18	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGGACTGCTCTTG	3392	False	NA	NA	False	NA	NA	NA	91541216	91551908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91541321_91542424_91543211_91550698
43449	chr2	+	1265	4	NNC	ENSMUSG00000017723.12	novel	849	5	NA	NA	-70	-1142	intron_retention	FALSE	canonical	3	47	junction_3	208.301597582821	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAGTTCCTAGGACAGA	43	False	NA	NA	False	NA	NA	NA	164404428	164409288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164405372_164405976_164406133_164407711_164407859_164409269
43451	chr6	-	1617	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-1	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2760.60902881955	1	52	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTAAAAATTTTAAGTGC	NA	False	NA	NA	False	NA	NA	NA	51446828	51439819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443291_51443385_51443474_51443686_51443885_51444025_51444164_51444276_51446650
43452	chr6	+	2144	6	NIC	ENSMUSG00000054226.14	novel	2103	6	NA	NA	5624	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	91.1491086078191	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	9093	False	NA	NA	False	NA	NA	NA	85898403	85907264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_85898494_85900114_85900199_85901341_85901505_85904222_85904346_85904789_85904967_85905757
43453	chr3	+	1587	8	NNC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-14	-10	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	153.526571521888	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTCTGTATATCTGAA	7018	False	NA	NA	False	NA	NA	NA	108291140	108295485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108291243_108291551_108291602_108291689_108291748_108292388_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
43454	chrX	-	1657	5	NNC	ENSMUSG00000046032.17	novel	1002	5	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	198.383939622138	40	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	NA	False	NA	NA	NA	100266135	100255564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100255791_100256528_100257471_100258006_100258132_100259088_100259185_100265867
43455	chrX	+	1298	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-63	-25	63	mono-exon	FALSE	NA	NA	NA	NA	NA	3	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
43456	chr4	+	2088	2	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	3506	175079	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	106	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTTTGGTGTCTGGTC	NA	False	NA	NA	False	NA	NA	NA	145176815	145352537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145178856_145352489
43457	chr13	+	3949	15	NIC	ENSMUSG00000047789.6	novel	8910	15	NA	NA	1	-6958	intron_retention	TRUE	canonical	1	3	junction_2	12.2582750059888	4	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAATGATGGTCTCTCAT	NA	False	NA	NA	False	NA	NA	NA	112797300	112868319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_112797407_112806120_112806266_112820595_112822733_112825806_112825929_112826055_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112862730_112865731_112865822_112868032
43458	chr9	+	2464	3	ISM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	294	5	16	-1	3prime_fragment	FALSE	canonical	3	208	junction_2	7.5	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGCTTCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	107446609	107449970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_107448270_107448690_107448781_107449256
43461	chr19	-	2394	11	NNC	ENSMUSG00000024926.11	novel	1386	13	NA	NA	-1	-4	intron_retention	FALSE	non_canonical	0	0	junction_9	118.95713513699	4	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGAGCTATCAGGAGTT	3628	False	NA	NA	False	NA	NA	NA	5660077	5653048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657993_5658282_5658358_5658665_5659401_5659490_5659553_5659879_5659947_5660045
43462	chr9	-	1360	2	FSM	ENSMUSG00000097195.11	ENSMUST00000182517.3	442	2	-923	5	0	-3	multi-exon	FALSE	canonical	3	461	junction_1	0	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGCAAATATTTATTCAAT	NA	False	NA	NA	False	NA	NA	NA	88404941	88403112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403502_88403970
43463	chr11	+	1636	10	NNC	ENSMUSG00000059552.14	novel	1771	11	NA	NA	2	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	889.420257843124	1	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTATCACTTATATGG	NA	False	NA	NA	False	NA	NA	NA	69471232	69482684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69477716_69477791_69478173_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480470_69480614_69480689_69481481_69481589_69482175
43464	chr11	-	1657	6	FSM	ENSMUSG00000019173.12	ENSMUST00000019317.12	1967	6	55	255	16	-255	multi-exon	FALSE	canonical	1	1	junction_2	59.308009577122	606	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTTGTCTTCCTCGTCCTT	NA	False	NA	NA	False	NA	NA	NA	100628986	100606091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100606989_100607583_100607732_100608667_100608791_100609256_100609409_100610740_100610995_100628903
43465	chr3	-	1663	7	NNC	ENSMUSG00000028029.12	novel	1126	7	NA	NA	-2	-9	intron_retention	FALSE	canonical	0	0	junction_6	349.99654760202	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATAAAATATGTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	132389600	132366268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132388962
43466	chr11	+	1712	10	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	4	-140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	533.996416504368	1	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAGAAACACTAGGTCTG	NA	False	NA	NA	False	NA	NA	NA	4823954	4844060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824094_4833422_4833496_4833725_4833772_4834021_4834117_4838884_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
43467	chrX	+	4076	20	FSM	ENSMUSG00000036769.15	ENSMUST00000035766.13	4167	20	62	29	17	-29	multi-exon	FALSE	canonical	3	33	junction_8	9.86248944541599	57	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGATGACATTATTAAATC	NA	False	NA	NA	False	NA	NA	NA	23559351	23672200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
43468	chr19	+	2077	9	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	178.857441486229	2	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTGATGTCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	60800048	60824673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806045_60809642_60809794_60810732_60810796_60819224_60819333_60821021_60821117_60823263_60823624_60823709
43469	chr12	+	2727	14	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	94.185075263371	1	151	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157631	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165422_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
43470	chr19	+	1111	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	73	1170	12	2	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	24	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540555	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
43472	chr12	-	1934	6	NNC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-14	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.9847953763884	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008989	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76984606_76984640_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
43474	chr5	+	1956	8	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	335	intron_retention	FALSE	non_canonical	0	0	junction_3	747.286683780129	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTGATTCTTACTATT	NA	False	NA	NA	False	NA	NA	NA	108208603	108242370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235201_108235804_108235956_108239926_108240023_108241203
43475	chr7	-	717	1	FSM	ENSMUSG00000002985.17	ENSMUST00000207525.2	897	1	640	-460	640	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	35	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATTCTGAGTCTCTGTG	NA	False	NA	72	True	NA	NA	NA	19430916	19430199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19430200_19430900
43476	chr12	+	1769	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	187	junction_2	97.0602261485105	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGATGGGTGTGCTACT	NA	False	NA	NA	False	NA	NA	NA	109506881	109538160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
43477	chr10	+	3192	5	FSM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	24	0	24	0	multi-exon	FALSE	canonical	3	23	junction_1	4.84767985741633	84	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGCTGGTGCTTGGTGTCT	1798	False	NA	NA	False	NA	NA	NA	61311603	61418570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61311669_61318114_61318262_61362838_61362989_61383826_61383995_61415908
43479	chr4	+	2033	4	NNC	ENSMUSG00000028261.14	novel	673	4	NA	NA	11	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	222.15460082264	1591	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCACTTTTCTGGTTTTTT	-26	True	NA	NA	False	NA	NA	NA	24898093	24903500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_24898303_24898572_24898677_24901693_24903132_24903218
43480	chr19	+	3872	10	Antisense	novelGene_ENSMUSG00000024982.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	163	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCTCCGCCACAGCCAC	2564	False	NA	NA	False	NA	NA	NA	55288977	55304444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_55291033_55291113_55291267_55292126_55292173_55292841_55293012_55297337_55297390_55298174_55298338_55300059_55300217_55301620_55301712_55302731_55303205_55303932
43481	chr7	-	1728	8	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	426.128561610705	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	NA	False	NA	NA	NA	78798694	78783515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792312_78794994_78795127_78795369_78795493_78798642
43482	chr4	-	2245	4	Antisense	novelGene_ENSMUSG00000035683.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATCCTCATCGAGGTGAG	NA	False	NA	NA	False	NA	NA	NA	44349073	44332903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_44332966_44340624_44340749_44344914_44345022_44347121
43483	chr9	-	1642	4	NIC	ENSMUSG00000001348.16	novel	1447	6	NA	NA	-90	-1	intron_retention	FALSE	canonical	3	21	junction_3	110.605404730309	92	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAATGGGTGTGTCATCAA	9989	False	NA	NA	False	NA	NA	NA	22041984	22038027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_22038559_22038970_22039317_22040826_22041426_22041818
43484	chr2	+	1312	12	ISM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	201	0	23	0	3prime_fragment	FALSE	canonical	3	758	junction_3	70.826875414575	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	155850165	155860199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
43485	chr9	-	2241	12	NNC	ENSMUSG00000000168.11	novel	4035	14	NA	NA	266	748	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	372.819057435074	10	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTTGTAGAAGTGGAGCT	NA	False	NA	NA	False	NA	NA	NA	50570814	50547079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562188_50569513_50569590_50569987_50570090_50570490
43486	chr10	-	2233	10	NNC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-5603	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	91.2673457215763	1	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAAAGCCTGTGGAAATA	5909	False	NA	NA	False	NA	NA	NA	41628237	41594843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597554_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41628007
43489	chr14	-	2373	9	FSM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	0	1741	0	1535	multi-exon	FALSE	canonical	3	306	junction_8	29.8556422640679	251	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAATGTTTGAAAG	NA	False	NA	NA	False	NA	NA	NA	57015773	56959907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247
43490	chr10	+	1331	5	NIC	ENSMUSG00000006728.13	novel	714	7	NA	NA	26	-23	intron_retention	FALSE	canonical	3	131	junction_1	2303.20139968262	3	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGACAAAGAGTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	126899510	126903143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126899629_126900453_126901134_126901821_126901873_126901969_126902106_126902797
43491	chr19	-	1935	4	FSM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	253	0	-17	0	multi-exon	TRUE	canonical	3	149	junction_2	8.28653526310404	433	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGCTGACAAACTCTC	NA	False	NA	NA	False	NA	NA	NA	10859112	10848023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10849514_10849950_10850054_10851605_10851851_10859015
43492	chr7	+	3899	14	ISM	ENSMUSG00000030671.10	ENSMUST00000032909.9	6573	16	79328	1318	-11569	-1318	3prime_fragment	FALSE	canonical	3	54	junction_12	10.9344469534364	36	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTGAACTTGCGTTTAT	5610	False	NA	NA	False	NA	NA	NA	114093843	114137168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_114093970_114097146_114097287_114105421_114105529_114107329_114107541_114108073_114108148_114117515_114117656_114118746_114118885_114120898_114121011_114122567_114122682_114126015_114126216_114129894_114130099_114131481_114131644_114133799_114134068_114135265
43493	chr2	-	3353	14	NNC	ENSMUSG00000045624.16	novel	3396	14	NA	NA	19	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	171.543463190276	1	163	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTACCCGTTTGTATA	6996	False	NA	NA	False	NA	NA	NA	140012465	139961807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_139962815_139965445_139965598_139966854_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996856_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
43497	chr6	-	1817	4	NIC	ENSMUSG00000030357.11	novel	2678	9	NA	NA	56	202	intron_retention	FALSE	canonical	3	5250	junction_1	252.825807402822	1	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGTGAAAGAGAGGGGCA	9325	False	NA	NA	False	NA	NA	NA	128415584	128410522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_128411836_128412676_128412820_128413532_128413678_128415368
43498	chr14	+	2827	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	-101	0	54	0	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	463	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	99283711	99311976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
43499	chr10	+	2961	13	NIC	ENSMUSG00000020212.15	novel	3074	14	NA	NA	1	2	combination_of_known_junctions	FALSE	canonical	3	32	junction_3	21.2053452380919	81	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGATGCTTCTGTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	117977716	118004904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_117977868_117978754_117978870_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
43500	chr1	+	1703	6	Antisense	novelGene_ENSMUSG00000102982.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.8	2	62	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACGACAGGGAAGACAA	NA	False	NA	NA	False	NA	NA	NA	13696127	13721110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13697129_13697579_13697661_13700287_13700437_13708453_13708638_13717613_13717734_13720942
43502	chr7	-	2843	4	NIC	ENSMUSG00000030652.12	novel	914	6	NA	NA	-11	-7	intron_retention	FALSE	canonical	3	940	junction_1	43.3615292883245	12	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGGATTCCTTGGTTTTC	6656	False	NA	NA	False	NA	NA	NA	118132548	118124291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_118124518_118125046_118125116_118126559_118128961_118132401
43504	chr2	-	363	1	FSM	ENSMUSG00000087701.5	ENSMUST00000120318.2	493	1	333	-203	333	203	mono-exon	FALSE	NA	NA	NA	NA	NA	201	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	51761297	51760934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_51760900_51761300
43505	chr9	+	1841	8	NNC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	573.407323971079	3	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACTCTGCTCTGATTTT	NA	False	NA	NA	False	NA	NA	NA	65537841	65567802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65538041_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
43506	chr14	-	4282	17	NNC	ENSMUSG00000064128.9	novel	4756	18	NA	NA	-1	-11	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_16	15.1471944597011	69	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATACTGCATCTGTTTTA	2391	False	NA	NA	False	NA	NA	NA	56809304	56764228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_56764569_56767144_56767266_56767346_56767432_56767506_56767648_56769692_56769807_56770032_56770098_56772212_56772298_56772807_56773051_56780221_56780388_56786880_56787014_56789379_56791007_56791116_56791220_56792546_56792659_56796029_56796294_56801409_56801534_56802125_56802625_56809244
43508	chr5	-	2099	14	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10660	-8030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	117	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAACGTGCTCTCTGCGGG	3893	False	NA	NA	False	NA	NA	NA	129875173	129864474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864639_129865295_129865360_129866114_129866252_129866880_129867056_129867650_129867747_129868531_129868641_129868843_129869004_129869083_129869150_129870690_129870793_129871410_129871554_129872178_129872314_129873808_129873929_129874452_129874494_129874586
43510	chr5	-	1908	6	NNC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	-4	35	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	96.6821596779882	63	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATAAAATTGTATTTTAA	5468	False	NA	NA	False	NA	NA	NA	150589046	150566429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_150566781_150570465_150570543_150570924_150571014_150574129_150574205_150584743_150585979_150588965
43511	chr6	-	1092	9	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1930.50511120147	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437448_125437552_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
43512	chr8	-	2777	7	NNC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	20	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	125.344081985903	1	107	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGAACGTTTCCCTTGG	NA	False	NA	NA	False	NA	NA	NA	112660411	112638650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112640739_112641114_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660073_112660270
43513	chr2	-	3056	12	Intergenic	novelGene_2644	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTCAGGAAAGGCGCTAA	7670	False	NA	NA	False	NA	NA	NA	69578359	69553241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_69553300_69562087_69562156_69562538_69562616_69562720_69562796_69563158_69563267_69563529_69563576_69564632_69564723_69566211_69566241_69566331_69566472_69571828_69572035_69573953_69574124_69576370
43514	chr7	-	1590	5	NNC	ENSMUSG00000038650.16	novel	1658	10	NA	NA	3965	-5	intron_retention	FALSE	non_canonical	0	0	junction_2	328.953264157692	1	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGCAAGAAAGGTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	140744076	140740245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140740479_140740562_140740742_140742340_140743192_140743266_140743438_140743920
43515	chr9	+	2839	17	Antisense	novelGene_ENSMUSG00000057969.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGAGAAGAGTCCGCAG	NA	False	NA	NA	False	NA	NA	NA	107475551	107482355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_107476377_107476688_107476916_107477001_107477058_107477148_107477307_107477528_107477570_107477651_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480192_107480319_107480414_107480494_107480619_107481005_107481069_107481241_107481400_107482167
43516	chr8	+	1601	10	ISM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	2330	-4	400	4	3prime_fragment	FALSE	canonical	3	205	junction_7	22.7210676153267	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTTTGGCAATCCTTTA	4479	False	NA	NA	False	NA	NA	NA	123953934	123958993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
43517	chr3	-	1950	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	-8	1722	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	130.148632980399	529	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTTAGGCATGGTATTTA	NA	False	NA	NA	False	NA	NA	NA	53771195	53763520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764308_53764467_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
43518	chr11	+	1514	7	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4324	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2714.12800095271	10	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGGGGGAACTGTAGA	NA	False	NA	NA	False	NA	NA	NA	55360559	55391340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55379881_55388818_55388868_55389383_55389494_55390284
43519	chr5	+	1403	11	NIC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	5	-14	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	219.541704466372	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTCTTTCAAGTCTTT	5869	False	NA	NA	False	NA	NA	NA	31855344	32242292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32241924
43520	chr7	-	1563	2	ISM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	34	6053	34	-2118	5prime_fragment	FALSE	canonical	3	37	junction_1	0	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGTATCTCTGACATCC	NA	False	NA	NA	False	NA	NA	NA	12514547	12508071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_12509586_12514498
43521	chr17	+	1843	11	NNC	ENSMUSG00000024101.16	novel	2905	11	NA	NA	5	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	43.859890560739	293	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTGTCCTTTTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	66418552	66426448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66418645_66420857_66421012_66422665_66422778_66422948_66423097_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
43522	chr8	-	3110	5	NNC	ENSMUSG00000071302.11	novel	413	5	NA	NA	36	191	intron_retention	FALSE	canonical	0	0	junction_4	29.7699512932084	2	122	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGCTTCCTGCTATGA	NA	False	NA	NA	False	NA	NA	NA	129960813	129943832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_129946633_129948024_129948086_129948304_129948432_129960615_129960714_129960789
43523	chr7	+	2000	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	169	49	0	-49	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	3640	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCACCCTCTCAATTTG	NA	False	NA	NA	False	NA	NA	NA	131162119	131173572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
43524	chr6	+	1439	11	NNC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	12	junction_2	329.326342705833	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTCTGTTGCCTCTT	5423	False	NA	NA	False	NA	NA	NA	83031711	83034660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83032030_83032109_83032192_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
43525	chr3	+	2123	12	NIC	ENSMUSG00000050150.17	novel	2248	13	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	36.7153445976695	161	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTGCTATGTCTCATGA	NA	False	NA	NA	False	NA	NA	NA	135053777	135103583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720_135099830_135103356
43526	chr13	+	3203	17	NIC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	37.006703362364	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGCTATTGTGATCTT	5509	False	NA	NA	False	NA	NA	NA	51805747	51838080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_51805857_51806642_51806792_51808531_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
43527	chr12	-	1658	14	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	16	-2513	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_9	89.6424191641963	12	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATATCTTGCTTACTAG	NA	False	NA	NA	False	NA	NA	NA	55349767	55328288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344591_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
43528	chrX	-	1926	1	Antisense	novelGene_ENSMUSG00000016409.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAACAATGGTAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	36414340	36412414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36412400_36414300
43529	chr5	+	2064	17	NIC	ENSMUSG00000029227.16	novel	4673	17	NA	NA	-8	8	combination_of_known_junctions	TRUE	canonical	3	110	junction_9	220.557452478374	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	NA	False	NA	NA	NA	74696123	74756814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
43530	chr12	-	1684	12	FSM	ENSMUSG00000056458.17	ENSMUST00000070565.15	1693	12	9	0	0	0	multi-exon	FALSE	canonical	3	80	junction_11	66.0974737267458	490	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7669	False	NA	NA	False	NA	NA	NA	110807364	110774231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
43531	chr8	+	2945	7	NIC	ENSMUSG00000031813.9	novel	1062	9	NA	NA	-3	-23	intron_retention	FALSE	canonical	3	346	junction_1	34.1906419945575	5	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACGCTACCTGGGACC	NA	False	NA	NA	False	NA	NA	NA	71995562	72000647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71995702_71995776_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
43532	chr2	-	1293	1	Antisense	novelGene_ENSMUSG00000027285.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTCGCGCCACCACACC	NA	False	NA	NA	False	NA	NA	NA	120452041	120450748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_120450700_120452000
43533	chr8	-	2639	17	FSM	ENSMUSG00000031755.7	ENSMUST00000034206.6	3064	17	423	2	423	-2	multi-exon	FALSE	canonical	1	2	junction_15	7.54569413639329	105	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTTGTTGTTTATAAA	NA	False	NA	NA	False	NA	NA	NA	94825133	94794583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
43534	chr7	+	283	1	Intergenic	novelGene_2931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGGGATTTTTTTTTACA	NA	False	NA	NA	False	NA	NA	NA	39150042	39150325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_39150000_39150300
43535	chr6	-	3699	11	FSM	ENSMUSG00000019577.7	ENSMUST00000019721.7	3484	11	-230	15	-230	-15	multi-exon	FALSE	canonical	2	10	junction_7	4.42831796509691	31	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATTATAATAGTAATGT	NA	False	NA	NA	False	NA	NA	NA	5496539	5483365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_5485593_5486677_5486792_5487063_5487175_5487378_5487478_5489134_5489212_5491069_5491148_5491590_5491678_5491829_5492015_5492705_5492778_5494889_5495032_5496032
43536	chr7	+	2633	7	NNC	ENSMUSG00000109378.2	novel	2721	11	NA	NA	461	33	intron_retention	FALSE	canonical	0	0	junction_6	262.390770925097	1	47	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTACCCTGGAGGTATTGG	68	False	NA	NA	False	NA	NA	NA	30263244	30266857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30265807_30266173_30266378_30266567
43537	chr4	-	2343	6	NIC	ENSMUSG00000051517.15	novel	1508	8	NA	NA	13	-2	intron_retention	FALSE	canonical	3	106	junction_4	10.8185026690388	291	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAAAAGCCTTCCTGTCT	-1	True	NA	NA	False	NA	NA	NA	43499648	43496149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43496721_43496820_43496910_43497086_43498030_43498585_43498705_43498895_43499338_43499469
43538	chr10	+	1548	1	NIC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	798	-1097	mono-exon	FALSE	NA	NA	NA	NA	NA	55	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCCTTCAGTTTCC	5298	False	NA	NA	False	NA	NA	NA	79979001	79980549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79979000_79980500
43539	chr10	+	933	2	ISM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	2451	5	2396	0	3prime_fragment	FALSE	canonical	3	2420	junction_1	0	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	6896	False	NA	NA	False	NA	NA	NA	79980599	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79981142_79981256
43541	chr3	-	2963	2	NIC	ENSMUSG00000027679.14	novel	1695	5	NA	NA	42	-1	intron_retention	FALSE	canonical	3	3616	junction_1	0	11	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATCAGTGTCTTGGTAT	NA	False	NA	NA	False	NA	NA	NA	34135369	34131503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_34134432_34135334
43542	chr18	-	1470	3	NNC	ENSMUSG00000051316.9	novel	3302	2	NA	NA	36	-1609	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	630	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTTCCATGTTACAGAAA	NA	False	NA	NA	False	NA	NA	NA	37777221	37775152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_37775255_37775441_37776586_37776997
43544	chr1	-	2782	23	Intergenic	novelGene_365	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTCCTTCCGCCTCAGCC	NA	False	NA	NA	False	NA	NA	NA	52194523	52158604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_52158780_52159067_52159232_52161749_52161880_52162271_52162416_52165676_52165776_52171700_52171792_52174760_52174839_52176035_52176128_52176435_52176587_52178349_52178510_52179733_52179827_52182057_52182118_52183242_52183274_52183361_52183454_52184306_52184349_52186450_52186535_52187057_52187158_52188060_52188194_52189773_52189826_52190394_52190491_52191387_52191537_52193001_52193187_52194142
43545	chr6	-	1229	10	NNC	ENSMUSG00000001642.19	novel	1387	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	343.589584343204	8	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	False	NA	NA	False	NA	NA	NA	34294376	34280868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288915_34289636_34289743_34294274
43546	chrX	-	2910	12	FSM	ENSMUSG00000045802.14	ENSMUST00000059003.5	1479	12	-98	-1333	-98	-12	multi-exon	FALSE	canonical	2	9	junction_1	7.96998501611043	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTTGAGCATACTTTT	NA	False	NA	NA	False	NA	NA	NA	95411623	95349795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_95351419_95355322_95355384_95356633_95356734_95358396_95358613_95363891_95364023_95364209_95364292_95365602_95365665_95365900_95365977_95373119_95373245_95382022_95382151_95400740_95400850_95411426
43549	chrX	+	2931	4	NIC	ENSMUSG00000001127.13	novel	2854	5	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	348	junction_2	27.6325090347503	34	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAACTATCTTTGTCCTTC	6302	False	NA	NA	False	NA	NA	NA	20714810	20719137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20716322_20716483_20716588_20717704_20718052_20718168
43550	chr11	-	3690	20	ISM	ENSMUSG00000033389.17	ENSMUST00000047463.15	4074	21	87757	2	-15370	0	3prime_fragment	FALSE	canonical	3	13	junction_17	3.76380193237497	91	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGGCACATGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	64966030	64892866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_64894277_64896279_64896332_64898888_64899267_64900707_64900866_64902696_64902925_64912766_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996
43551	chr14	-	1568	7	FSM	ENSMUSG00000037722.9	ENSMUST00000226276.2	710	7	-18	-840	-18	684	multi-exon	FALSE	canonical	1	3	junction_4	556.682260260635	480	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAGTCTTTCATGTTAG	NA	False	NA	NA	False	NA	NA	NA	45626268	45614926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45619469_45619536_45620850_45620914_45622037_45622206_45626204
43553	chr2	-	2236	11	FSM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	50	4	50	-4	multi-exon	TRUE	canonical	3	287	junction_6	17.8672885463911	650	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTATGGAGTGCATTAGCG	NA	False	NA	NA	False	NA	NA	NA	155571345	155543600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
43555	chr4	-	4056	7	ISM	ENSMUSG00000035696.16	ENSMUST00000107836.8	1694	12	16585	-3179	-2692	-26	3prime_fragment	FALSE	canonical	3	42	junction_6	13.4339950209244	92	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGTATGATGTACAC	6737	False	NA	NA	False	NA	NA	NA	44142358	44126240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_44129657_44131543_44131644_44133639_44133762_44134889_44134975_44137554_44137662_44138669_44138832_44142294
43556	chr1	+	1584	6	NIC	ENSMUSG00000026520.9	novel	1580	7	NA	NA	72	-2	intron_retention	FALSE	canonical	3	1107	junction_1	28.9205809070288	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTAGTCTCACTGTG	118	False	NA	NA	False	NA	NA	NA	180731959	180735650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180732096_180732308_180732380_180733438_180733950_180734159_180734253_180734354_180734519_180735041
43558	chr17	-	1024	1	FSM	ENSMUSG00000116864.2	ENSMUST00000231447.2	1031	1	398	-391	398	391	mono-exon	FALSE	NA	NA	NA	NA	NA	11	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	16890050	16889026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_16889000_16890000
43559	chrX	+	2101	4	NIC	ENSMUSG00000079317.11	novel	1294	4	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	200	junction_3	21.9291789378647	21	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAAGAATGTGGTCATTT	NA	False	NA	NA	False	NA	NA	NA	165223771	165236130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_165223836_165229786_165229899_165232783_165233711_165235132
43561	chr6	-	1600	4	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	-2272	-24	intron_retention	FALSE	non_canonical	0	0	junction_1	459.148003250465	4	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTCGTCATCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	88485625	88480584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88481667_88481718_88482030_88484226_88484352_88485543
43563	chr6	+	2597	3	ISM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	46	1	-16	-1	intron_retention	FALSE	canonical	3	968	junction_1	11.5	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTCTTTTCTTTCC	-25	True	NA	NA	False	NA	NA	NA	18848623	18854051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_18848763_18849624_18849666_18851634
43564	chr2	-	1555	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	-382	0	-382	0	multi-exon	FALSE	canonical	3	328	junction_4	27.1834048639974	32	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	NA	False	NA	NA	NA	26806924	26803394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
43566	chr9	+	1732	9	NIC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	-6	-4	intron_retention	FALSE	canonical	3	766	junction_7	67.7269333426518	85	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTTTTGAGTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	20799554	20803470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802662_20802746_20803044_20803127
43567	chr11	+	2318	9	NNC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	107	727	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	81.7370020247868	1	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCAAAATAAAATAATTTT	NA	False	NA	NA	False	NA	NA	NA	105017411	105031947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105017433_105017601_105017694_105019681_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
43568	chr3	-	2072	2	FSM	ENSMUSG00000001018.16	ENSMUST00000107352.2	1843	2	-566	337	-1	7	multi-exon	FALSE	canonical	3	714	junction_1	0	48	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATTATGGTTTCA	NA	False	NA	NA	False	NA	NA	NA	90398301	90395669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90396901_90397460
43569	chr6	-	2251	4	NNC	ENSMUSG00000045896.15	novel	3982	5	NA	NA	-4	-665	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.863940416834	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTAAATGTTTTCCAGGT	NA	False	NA	NA	False	NA	NA	NA	83808727	83783047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83785068_83791789_83791852_83808252_83808311_83808616
43571	chr17	-	2542	13	NNC	ENSMUSG00000024095.16	novel	3116	13	NA	NA	344	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	159.429974178843	163	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGGTTTGTTTCTTTCT	4006	False	NA	NA	False	NA	NA	NA	80369220	80336946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356289_80357233_80357322_80358056_80358295_80360951_80361071_80369085
43572	chr17	-	5062	2	ISM	ENSMUSG00000116560.2	ENSMUST00000231996.2	3159	6	14177	-4317	14177	4317	3prime_fragment	FALSE	canonical	3	32	junction_1	0	47	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTATTGCTTAATAAAATTT	3515	False	NA	NA	False	NA	NA	NA	6781935	6774872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_6779304_6781304
43573	chr9	+	4328	10	ISM	ENSMUSG00000032816.16	ENSMUST00000213533.2	6220	20	26935	8	26886	-8	3prime_fragment	FALSE	canonical	3	6	junction_3	2.94811092476036	27	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCAGACATGTTGCTCT	2924	False	NA	NA	False	NA	NA	NA	65035702	65045214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_65035987_65036061_65036164_65037844_65038029_65038625_65038754_65038890_65039062_65039207_65039346_65040332_65040439_65040921_65041151_65041754_65041920_65042393
43574	chr5	+	2147	14	FSM	ENSMUSG00000029521.8	ENSMUST00000199937.5	2190	14	-6	49	-2	-49	multi-exon	FALSE	canonical	2	3	junction_4	77.8046408010314	1	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTGTTCATGTACACAG	9176	False	NA	NA	False	NA	NA	NA	110987842	111021950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
43576	chr11	+	2431	8	Antisense	novelGene_ENSMUSG00000017747.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	59	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGATGACTTTAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	100656941	100661766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100657851_100658109_100658196_100658839_100659113_100659207_100659403_100659852_100660355_100660480_100660606_100660897_100661176_100661703
43577	chr8	-	1633	6	Antisense	novelGene_ENSMUSG00000002395.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	70	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATACCTGGCCTTTTTCGT	NA	False	NA	NA	False	NA	NA	NA	71822371	71819728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_71820015_71820177_71820336_71820411_71820492_71820601_71820754_71821191_71821946_71822168
43578	chr17	-	3003	12	NNC	ENSMUSG00000023953.10	novel	3238	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.09346231420181	5	60	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGCTTGCATACTTT	7146	False	NA	NA	False	NA	NA	NA	46513548	46482281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46482549_46482759_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
43579	chr6	-	1425	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	138	38	0	-38	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	5	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACAGGTTGTGACAAT	NA	False	NA	NA	False	NA	NA	NA	124791121	124787592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
43582	chr7	+	3082	13	NIC	ENSMUSG00000051768.10	novel	2155	17	NA	NA	0	-3	intron_retention	FALSE	canonical	3	337	junction_4	34.5843373348238	25	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGCAACGGTTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	24246622	24272856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24266393_24266463_24266570_24266738_24267352_24269640_24269735_24269873_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
43583	chr2	-	1545	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	48	5	0	-5	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	2	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTCGCCTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	25114666	25112176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
43584	chr5	+	2610	28	NNC	ENSMUSG00000029176.14	novel	3854	28	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	90.8662171004763	1	48	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCATACTCTGTTCCA	NA	False	NA	NA	False	NA	NA	NA	52991471	53024076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006140_53007828_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
43585	chr13	-	2663	10	NIC	ENSMUSG00000057554.14	novel	2736	10	NA	NA	95	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_9	18.0664069955372	11	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATGAATACTCTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	12476279	12454299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468138_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
43586	chr7	-	3098	10	NIC	ENSMUSG00000054662.9	novel	3088	23	NA	NA	843	-24	intron_retention	FALSE	canonical	3	132	junction_7	13.6137185711081	1	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAATAAACCTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	140687744	140681161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709
43587	chr3	+	2481	1	Intergenic	novelGene_3110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGGACAGGTGAGTGAT	NA	False	NA	NA	False	NA	NA	NA	41465150	41467631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_41465200_41467600
43588	chr4	-	1677	7	NIC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	12	-3	intron_retention	FALSE	canonical	3	1259	junction_3	145.347189706425	49	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAATCCTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	124587381	124571955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_124572780_124573494_124573606_124575985_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
43589	chr19	+	1715	12	NNC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.39500826771	3	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGTTTGACCTACTGTT	3607	False	NA	NA	False	NA	NA	NA	4198649	4204030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4198715_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203253_4203368_4203490_4203595
43590	chr10	-	1927	10	NNC	ENSMUSG00000020238.15	novel	2841	14	NA	NA	9	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	198.377866148867	1	46	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCAGGTGTCCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	81327880	81322288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323440_81323503_81323593_81323680_81323735_81324028_81324190_81324261_81324301_81324382_81324390_81325787_81325955_81326064_81326150_81327003_81327108_81327810
43591	chr3	+	2635	15	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	222.851602495234	1	108	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTATAGTGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	157742336	157772727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754151_157757394_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
43593	chrX	+	1386	9	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1132.5164457967	54	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCACTTTTTGAATTC	NA	False	NA	NA	False	NA	NA	NA	52077023	52110533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52106305_52106411_52108981_52109029_52109199_52109277_52109943
43594	chr15	+	2331	2	NNC	ENSMUSG00000050846.10	novel	2486	2	NA	NA	5311	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCAAGTCTGTGTAATT	NA	False	NA	NA	False	NA	NA	NA	75818111	75821243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_75818171_75818971
43595	chr14	-	1973	18	NNC	ENSMUSG00000022040.9	novel	2035	19	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	80.1817571948334	2	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTTTCTTGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	66361942	66321826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66322210_66322379_66322439_66322744_66322817_66323710_66323755_66324413_66324532_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
43596	chr8	-	2658	19	NNC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	108.195938514859	2	123	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATCCCGGTCTTGACCT	1031	False	NA	NA	False	NA	NA	NA	3671296	3660091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666165_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
43597	chr7	-	2033	11	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-2	0	intron_retention	FALSE	canonical	3	13	junction_8	135.864785724631	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976595	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125974238_125974376_125975845_125975912_125976008
43598	chr3	-	2824	4	ISM	ENSMUSG00000028134.12	ENSMUST00000029780.12	3364	14	58233	252	-768	-252	intron_retention	TRUE	canonical	3	41	junction_1	29.7806797922561	4	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGAGGTTTGATGGTTG	NA	False	NA	NA	False	NA	NA	NA	119518804	119512642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_119514110_119514255_119514334_119514437_119514655_119517742
43599	chr9	+	1867	18	NNC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	279.146611030525	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATTGTGTGGCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	21914314	21925514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921454_21921538_21921819_21921899_21922462_21922550_21922733_21922772_21923007_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
43600	chr10	+	2411	4	Antisense	novelGene_ENSMUSG00000062931.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	210	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGACCGGAAGTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	82060405	82077119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_82062425_82063275_82063425_82063631_82063759_82077003
43602	chr7	-	1572	2	ISM	ENSMUSG00000070822.6	ENSMUST00000211392.2	3709	7	25	6053	25	-2118	5prime_fragment	FALSE	canonical	3	37	junction_1	0	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGTATCTCTGACATCC	NA	False	NA	NA	False	NA	NA	NA	12514556	12508071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_12509586_12514498
43603	chr18	+	1699	4	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	0	-111	intron_retention	FALSE	canonical	3	6761	junction_1	1869.49244448861	13	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGGTCTTCTGGTGGTC	NA	False	NA	NA	False	NA	NA	NA	75133547	75136340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_75133615_75134261_75134315_75134420_75135924_75136264
43604	chrX	-	1280	6	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	11	5	intron_retention	FALSE	canonical	3	11043	junction_5	2209.1086528281	44	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGCTGTTGCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	101232931	101228541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231609_101231899_101231978_101232903
43605	chr9	-	2545	14	Antisense	novelGene_ENSMUSG00000111030.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCCCTCGCCCGCCGCCG	2725	False	NA	NA	False	NA	NA	NA	44548525	44515969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_44516041_44518417_44518890_44524124_44524188_44525507_44525612_44534913_44535044_44535769_44535917_44537682_44537778_44538932_44539056_44539932_44540066_44541319_44541435_44542676_44542741_44545386_44545490_44546977_44547163_44547785
43606	chr9	+	1793	14	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	169	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	345.466788237521	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAATGAGTTTGGGTTGC	NA	False	NA	NA	False	NA	NA	NA	59446991	59472386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469282_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
43607	chr14	+	2180	7	NIC	ENSMUSG00000021996.17	novel	1988	9	NA	NA	-140	-12	intron_retention	FALSE	canonical	3	1233	junction_6	72.430809896219	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCAAACTTTCTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	74973266	74987276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_74973475_74975868_74975958_74978596_74978696_74979453_74980779_74982087_74982187_74982989_74983158_74987084
43608	chr13	+	1327	8	Antisense	novelGene_ENSMUSG00000021477.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGAACAGCGCCGGGCTC	1349	False	NA	NA	False	NA	NA	NA	64511619	64518120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_64512015_64513018_64513136_64514291_64514455_64514680_64514906_64515672_64515811_64515971_64516053_64516841_64516976_64518046
43609	chr6	+	2502	3	FSM	ENSMUSG00000007216.7	ENSMUST00000204095.3	4143	3	-38	1679	-38	-1679	multi-exon	FALSE	canonical	3	52	junction_2	4.5	141	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGTCACTGTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	48578958	48598482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48579055_48590111_48590194_48596158
43610	chr12	+	1597	2	FSM	ENSMUSG00000021241.8	ENSMUST00000223089.2	843	2	-2	-752	-2	0	multi-exon	FALSE	canonical	3	319	junction_1	0	217	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	84820062	84821862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84820146_84820348
43611	chr10	+	1038	1	Genic_Genomic	ENSMUSG00000096856.8	novel	NA	NA	NA	NA	-6	-14141	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATATATTCATCACTTGGG	NA	False	NA	NA	False	NA	NA	NA	81484886	81485924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_81484900_81485900
43612	chr19	-	2226	18	NNC	ENSMUSG00000025027.19	novel	2956	20	NA	NA	82	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	529.865517964726	1	95	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTCTGCTTTGTCTGCCT	7879	False	NA	NA	False	NA	NA	NA	53020494	52979614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986389_52988832_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000199_53000341_53000619_53000713_53001829_53001935_53013678_53013815_53020439
43613	chr18	+	2553	10	NNC	ENSMUSG00000000420.16	novel	3796	12	NA	NA	-15648	-170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	256.647522133536	5	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTTTTATTCCTTAT	NA	False	NA	NA	False	NA	NA	NA	24397403	24419697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766_24418377_24418713_24419558_24419628
43614	chr4	+	2665	1	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	86	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTCACCCCAGCACAAGT	257	False	NA	NA	False	NA	NA	NA	137469056	137471721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137469100_137471700
43615	chr19	+	2404	11	NNC	ENSMUSG00000024892.18	novel	4044	20	NA	NA	23175	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	32.199378875997	1	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATGTACAGTCTACCGC	NA	False	NA	NA	False	NA	NA	NA	4667610	4671710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670449_4670604_4670644_4670847_4670989_4671067
43616	chr11	-	3009	20	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	153	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATGTAGGTTGCTCGGG	NA	False	NA	NA	False	NA	NA	NA	78213202	78195287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78195866_78195967_78196146_78203939_78204014_78204171_78204265_78204336_78204473_78204640_78204763_78204986_78205083_78205168_78205281_78205528_78205623_78205784_78205993_78206336_78206464_78206720_78206867_78210296_78210414_78211104_78211279_78211386_78211497_78211866_78211950_78212087_78212242_78212321_78212399_78212511_78212591_78212951
43617	chr9	-	3642	19	NNC	ENSMUSG00000036395.16	novel	3701	20	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	7.20532210707243	26	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGATAATTATCTGTTT	NA	False	NA	NA	False	NA	NA	NA	26717728	26674352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_26676120_26676397_26676515_26676875_26676988_26677280_26677369_26678372_26678452_26678690_26678763_26679015_26679157_26679714_26679822_26680331_26680413_26681035_26681174_26682323_26682409_26685268_26685340_26689314_26689397_26691969_26692063_26703077_26703189_26705378_26705475_26706081_26706151_26707701_26707900_26717593
43618	chrX	-	3067	7	ISM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	958	473	958	301	intron_retention	FALSE	canonical	3	269	junction_2	87.6059675795865	6	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTGCATGCTTTCA	NA	False	NA	NA	False	NA	NA	NA	72160350	72151713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152
43619	chr7	-	3501	5	NIC	ENSMUSG00000062040.15	novel	3150	5	NA	NA	-6	-22	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	18.1245689603919	62	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAACATGTCTCCTACC	NA	False	NA	NA	False	NA	NA	NA	29605535	29592779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603469_29605478
43620	chr17	+	1480	6	NNC	ENSMUSG00000046711.17	novel	1717	6	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2094.81898024626	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTGGACAGTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	27775626	27782633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778552_27778625_27778645_27779901_27779986_27780434_27780486_27781411
43624	chr11	-	776	1	NIC	ENSMUSG00000015542.18	novel	1158	7	NA	NA	-10	-1589	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAATATAATAAGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	115078168	115077392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115077400_115078200
43625	chrX	+	2189	1	Intergenic	novelGene_4063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCCACCTAACAAGCT	NA	False	NA	NA	False	NA	NA	NA	139854801	139856990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_139854800_139857000
43627	chr16	-	1911	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1301.71319205691	2	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	961	False	NA	NA	False	NA	NA	NA	11021188	11010833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011590_11012323_11012576_11014137_11014261_11014336_11014416_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
43628	chr1	+	3970	2	ISM	ENSMUSG00000042751.15	ENSMUST00000190960.2	539	3	557	-3506	557	3506	3prime_fragment	FALSE	canonical	3	57	junction_1	0	304	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTAAGTTCAAAATCTG	NA	False	NA	NA	False	NA	NA	NA	152969782	152973849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_152969860_152969956
43631	chr15	-	3306	7	NIC	ENSMUSG00000018169.13	novel	1865	8	NA	NA	4	-2	intron_retention	FALSE	canonical	3	144	junction_4	12.3017613914973	6	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTGTCCAGCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	78657671	78640083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_78640845_78641496_78641583_78643392_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
43632	chrX	-	1645	9	FSM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	5	0	5	0	multi-exon	TRUE	canonical	3	269	junction_2	77.2438306598009	2248	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	NA	NA	NA	72161303	72151240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
43634	chr7	+	2404	11	NNC	ENSMUSG00000030727.13	novel	2782	12	NA	NA	1	-7	intron_retention	FALSE	non_canonical	0	0	junction_9	73.7688281051014	1	67	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCTAGTCAGTTGCCTTG	NA	False	NA	NA	False	NA	NA	NA	126028271	126045066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043490_126043694_126044109_126044496
43635	chr15	-	2295	4	NIC	ENSMUSG00000022617.16	novel	808	8	NA	NA	74	3	intron_retention	FALSE	canonical	3	387	junction_3	9.20144916122817	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATACAGACTTAAGTGAC	1723	False	NA	NA	False	NA	NA	NA	89313559	89310566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89312219_89312336
43637	chr6	-	1628	7	NNC	ENSMUSG00000038028.10	novel	3651	6	NA	NA	20	-972	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	395.729986508759	187	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACACAATGGTTAGGCTG	NA	False	NA	NA	False	NA	NA	NA	127086493	127063050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_127063257_127064287_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
43638	chr19	-	3383	2	ISM	ENSMUSG00000024764.11	ENSMUST00000236769.2	3324	7	10700	-31	10678	-9	intron_retention	FALSE	canonical	3	496	junction_1	0	1	157	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGCAGATGCTGGGAT	9871	False	NA	NA	False	NA	NA	NA	7207721	7203046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_7205795_7207086
43639	chr11	+	1777	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	8	-265	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4268.40042170366	1	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGCCTCCATCCTTTA	3043	False	NA	NA	False	NA	NA	NA	75623746	75656406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650249_75655445
43640	chr7	-	380	3	ISM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	1199	8	288	6	3prime_fragment	FALSE	canonical	3	29497	junction_1	199.5	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAACAGGCTTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	44772664	44771810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44771983_44772252_44772383_44772586
43641	chr3	-	2581	3	FSM	ENSMUSG00000028076.13	ENSMUST00000107620.3	1475	3	-1108	2	-101	-2	multi-exon	FALSE	canonical	3	84	junction_1	1.5	80	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTATCCAGAGGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	86906362	86903142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86903909_86903996_86904094_86904644
43643	chr6	+	2015	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	21	275	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	204.306193820289	31	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAATAAGGCAAGTGGCC	5747	False	NA	NA	False	NA	NA	NA	83254395	83280733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83254554_83256945_83257147_83262747_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83276591_83276676_83277452_83277521_83280307
43644	chr1	-	1465	1	FSM	ENSMUSG00000064823.3	ENSMUST00000082889.3	70	1	-639	-756	-639	756	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGATCTCAGCTCGCTCT	NA	False	NA	2	True	NA	NA	NA	86284691	86283226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86283200_86284700
43646	chr1	+	1293	7	NNC	ENSMUSG00000053332.14	novel	665	10	NA	NA	-270	0	intron_retention	FALSE	non_canonical	0	0	junction_3	2051.01076030549	84	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGTGAAGTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	160863319	160866105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863375_160863552_160863815_160864118_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
43647	chr16	-	2223	18	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	11	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	384.019300985526	1	113	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCCCCGTGGCAGACG	NA	False	NA	NA	False	NA	NA	NA	3895628	3857847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861947_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873665_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
43649	chr9	+	2688	17	NNC	ENSMUSG00000057193.9	novel	3456	22	NA	NA	56	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	60.2175418275273	14	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	5792	False	NA	NA	False	NA	NA	NA	21249179	21266324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256223_21259220_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
43651	chr7	-	2238	8	NNC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	5294	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	116.864826851804	1	80	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAATGAGGTTTGAAC	7959	False	NA	NA	False	NA	NA	NA	3209037	3204520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3204655_3204712_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208489_3208594_3208735_3208891
43652	chr9	+	3286	22	NNC	ENSMUSG00000032612.15	novel	3662	22	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	156.773259439496	1	129	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTAAACCAAGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	108225079	108269437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248140_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
43653	chr11	-	1324	7	Antisense	novelGene_ENSMUSG00000020149.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGAAGCCTAGGCCAAGGG	NA	False	NA	NA	False	NA	NA	NA	20175455	20151411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_20151653_20165629_20165703_20168812_20168909_20173083_20173178_20174364_20174497_20174645_20175046_20175167
43654	chr7	+	3265	9	NIC	ENSMUSG00000109378.2	novel	3007	10	NA	NA	-5	-15	intron_retention	FALSE	canonical	3	13	junction_7	262.855919421648	11	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTTCCCTTGAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	30262763	30267365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30265807_30266173_30266926_30267005
43655	chr11	+	1377	1	ISM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	8296	1	8065	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	18	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTAGGTTCAAGTTGTG	NA	False	NA	NA	False	NA	NA	NA	51866783	51868160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_51866800_51868200
43656	chr8	+	3480	23	ISM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	-43	732	2	-732	intron_retention	FALSE	canonical	3	158	junction_7	30.5902336815889	10	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCATTCACAAAAATCATTAA	NA	False	NA	NA	False	NA	NA	NA	85809900	85824179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580
43657	chr5	+	2928	13	NNC	ENSMUSG00000029179.15	novel	2485	13	NA	NA	3	1454	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	39.940580867083	2	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATTAAATGCATTTTAT	NA	False	NA	NA	False	NA	NA	NA	52940460	52977980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52959956_52960140_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462
43658	chr19	-	1955	1	Genic_Genomic	ENSMUSG00000071660.11	novel	NA	NA	NA	NA	7900	5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	93	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATCTTAGAAATTTATTT	10002	False	NA	NA	False	NA	NA	NA	8788388	8786433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_8786400_8788400
43659	chr7	-	2432	9	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-102	-11	intron_retention	FALSE	canonical	3	5	junction_8	47.4590283823847	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGGTTCCTGCCCGGGC	NA	False	NA	NA	False	NA	NA	NA	140676754	140671100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140675231_140676532
43660	chr5	+	1545	6	FSM	ENSMUSG00000025532.14	ENSMUST00000156729.2	669	6	-9	-867	6	10	multi-exon	FALSE	canonical	3	25	junction_1	131.765549367048	496	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATACCTGGTATGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	130058174	130089640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_130058336_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
43661	chr5	+	2168	5	NNC	ENSMUSG00000029175.18	novel	3088	6	NA	NA	3	378	intron_retention	FALSE	non_canonical	0	0	junction_3	50.3338852066876	2	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATGTTTTGACTTCCTT	6715	False	NA	NA	False	NA	NA	NA	30805313	30815966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30805443_30812091_30812165_30812838_30813445_30814087_30814202_30814720
43662	chr11	-	2668	2	ISM	ENSMUSG00000109408.2	ENSMUST00000208476.2	2853	4	25959	-61	15202	61	3prime_fragment	FALSE	canonical	1	1	junction_1	0	10	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTATTTTCTGAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	119356056	119351965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_119354496_119355918
43663	chrX	+	1491	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	78	30	-2	-30	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	1276	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAGCACCTATAAAAATT	NA	False	NA	NA	False	NA	NA	NA	163052504	163155977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
43664	chr5	-	758	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	1279	-96	1279	96	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5832276	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5832300
43666	chr8	+	1898	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	15	651	15	337	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	2847	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAGTAAGGAGGAGCCG	NA	False	NA	NA	False	NA	NA	NA	72973588	72977611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
43668	chr17	+	1932	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	-21	4	-21	-4	multi-exon	FALSE	canonical	3	218	junction_3	26.473748790075	835	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTGGCAAGTGTTTAC	NA	False	NA	NA	False	NA	NA	NA	12338149	12438528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
43670	chr10	+	3731	6	FSM	ENSMUSG00000015889.9	ENSMUST00000214527.2	690	6	-1216	-1825	-1216	8	multi-exon	FALSE	canonical	3	428	junction_1	24.3507700083591	4	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGAACCTATTA	NA	False	NA	NA	False	NA	NA	NA	93308880	93320688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823
43671	chr17	-	757	2	Genic_Genomic	ENSMUSG00000043801.8	novel	685	1	NA	NA	53	164	multi-exon	FALSE	canonical	0	0	junction_1	0	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTTTTATTGCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	17566349	17565553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_17566128_17566166
43672	chr4	+	2059	8	NIC	ENSMUSG00000028483.14	novel	1405	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	309	junction_5	47.1181753570699	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGATTCTTTTCTCCAA	NA	False	NA	NA	False	NA	NA	NA	83335957	83371577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
43673	chr4	+	2457	15	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	2582	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	45.5503757909183	1	73	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAATGTTGCCTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	141174598	141194531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192245_141192577_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
43674	chr3	+	1842	2	Antisense	novelGene_ENSMUSG00000069083.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACCCTTCAGCCCTCAGA	NA	False	NA	NA	False	NA	NA	NA	25264936	25266869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_25265912_25266002
43675	chr3	+	1873	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	115	0	-14	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	410	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3297	False	NA	NA	False	NA	NA	NA	32564798	32574892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
43676	chr4	+	1992	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	7	127	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	327.455482979493	1	57	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTATGTCTTTTATT	9988	False	NA	NA	False	NA	NA	NA	155954030	155973317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972318_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
43677	chr12	-	1782	7	FSM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	-9	0	-9	0	multi-exon	FALSE	canonical	2	86	junction_6	14.7016627933336	390	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9051	False	NA	NA	False	NA	NA	NA	31704834	31690048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
43678	chr13	+	634	4	ISM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	25	189618	25	-187433	5prime_fragment	FALSE	canonical	3	349	junction_1	12.0277457017791	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTGTCAAGTCTAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	113931065	114104379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117
43679	chr5	-	2399	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	55	7	-1	-7	multi-exon	FALSE	canonical	3	183	junction_2	1.5	1224	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAACTCACTGCGTTGAG	NA	False	NA	NA	False	NA	NA	NA	139330933	139321950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_139324131_139328317_139328430_139330826
43680	chr11	+	1171	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	73	8	32	-5	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATAACACATTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	9068579	9086159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
43681	chr11	+	2998	9	NNC	ENSMUSG00000078676.10	novel	3741	14	NA	NA	12246	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	94.905215873523	1	59	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAGACTGTAGACTTGAC	NA	False	NA	NA	False	NA	NA	NA	98713232	98724614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98713364_98713545_98714226_98718397_98718463_98719380_98719496_98719685_98719778_98720056_98720255_98722113_98722237_98722368_98722435_98723086
43683	chr2	+	1789	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1134.47062690304	1	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116373	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116614_130116951_130117067_130117582_130117745_130117895_130118095_130118363_130118544_130118626_130118789_130118983_130119053_130119395_130119545_130119768_130119891_130120075_130120212_130120816
43684	chr16	+	4914	22	Intergenic	novelGene_3877	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	146	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAGATACAAAAAGAGCCC	NA	False	NA	NA	False	NA	NA	NA	97593719	97641171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_97595859_97596851_97597062_97598898_97598980_97600255_97600430_97600753_97600837_97604908_97605044_97607245_97607363_97607672_97607751_97608204_97608368_97608921_97609056_97609853_97609982_97612248_97612347_97613752_97613928_97617307_97617390_97617734_97617826_97618145_97618242_97619404_97619544_97622969_97623211_97636777_97637028_97638770_97638926_97640452_97640548_97641121
43685	chr12	+	2289	11	FSM	ENSMUSG00000021044.16	ENSMUST00000166940.3	2199	11	-83	-7	-9	1	multi-exon	FALSE	canonical	2	6	junction_1	20.9752234791432	114	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCCTTCTCAATCATTG	NA	False	NA	NA	False	NA	NA	NA	88327575	88428495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_88327743_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
43686	chr5	+	4299	36	NNC	ENSMUSG00000041638.19	novel	8555	58	NA	NA	-1	-7989	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_29	126.345364063776	2	208	21	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGAGGGTGGGTCCCCTGA	NA	False	NA	NA	False	NA	NA	NA	115703329	115740684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115703366_115709467_115709571_115712637_115712702_115713223_115713356_115714178_115714288_115716950_115717050_115717134_115717270_115717693_115717763_115717845_115717955_115718563_115718639_115719061_115719191_115719548_115719600_115719839_115719939_115720322_115720497_115721456_115721610_115723864_115723958_115725847_115725924_115726034_115726195_115726992_115727183_115727259_115727385_115728303_115728483_115729032_115729127_115730123_115730238_115730367_115730567_115731635_115731792_115732091_115732274_115732521_115732578_115733051_115733133_115733351_115733383_115733459_115733496_115734914_115735043_115735124_115735315_115735432_115735504_115736759_115736926_115737130_115737326_115740444
43687	chr1	+	1675	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	-101	-1	-101	1	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	2494	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTCTCCTGTTCAAAA	NA	False	NA	NA	False	NA	NA	NA	167135845	167158355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
43688	chr12	-	1326	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-3	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	850.691777320082	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATAAAGCTTTGTAGAA	NA	False	NA	NA	False	NA	NA	NA	105188999	105183039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183739_105183782_105183961_105184481_105184552_105184917_105185089_105188791
43689	chr17	-	1140	4	Fusion	ENSMUSG00000024048.16_ENSMUSG00000034868.10	novel	1937	4	NA	NA	412	69	multi-exon	FALSE	canonical	0	0	junction_1	1388.00920586124	6123	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGATGCTGACTCAAGTG	7586	False	NA	NA	False	NA	NA	NA	71303890	71280951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_71281514_71301562_71301780_71303104_71303267_71303691
43690	chr2	+	3138	18	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	3	-19	intron_retention	FALSE	non_canonical	0	0	junction_2	236.74555275106	1	160	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTCTTGTGGGCAAAGT	637	False	NA	NA	False	NA	NA	NA	31462806	31507511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473292_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502916_31503042_31503120_31504722_31504795_31505509_31505699_31506190
43691	chr5	+	1787	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	-318	4	-14	-4	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	277	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCCCTGGATCCGTTTT	NA	False	NA	NA	False	NA	NA	NA	135037991	135041020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
43692	chr4	-	2426	10	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	-8589	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	507.126204858634	1	152	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137483047	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482656_137482854
43693	chr18	+	2854	10	Antisense	novelGene_ENSMUSG00000024477.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCGGAAGTGACACCCAC	NA	False	NA	NA	False	NA	NA	NA	46372923	46413889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_46374772_46378271_46378319_46379627_46379738_46381937_46382122_46387344_46387392_46391151_46391285_46392670_46392823_46395956_46396024_46407655_46407775_46413742
43695	chr5	+	1241	4	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	4	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1568.61644628493	16	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	760	False	NA	NA	False	NA	NA	NA	77099627	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107290_77114494
43697	chr11	+	2125	15	NIC	ENSMUSG00000018167.11	novel	2070	15	NA	NA	30	-4	combination_of_known_junctions	FALSE	canonical	3	5	junction_2	37.1593370033779	338	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGGTGTGATGGTGCAT	905	False	NA	NA	False	NA	NA	NA	98249223	98271934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_98249335_98262895_98263169_98265829_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
43698	chr7	-	517	1	FSM	ENSMUSG00000066724.4	ENSMUST00000086013.4	645	1	128	0	70	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAAAATAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	23646587	23646070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_23646100_23646600
43700	chr15	-	3531	3	NNC	ENSMUSG00000075511.10	novel	2270	4	NA	NA	2	202	intron_retention	FALSE	canonical	2	3	junction_1	2	3	90	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGAAGTAAGCTCAC	247	False	NA	NA	False	NA	NA	NA	83251481	83237845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83240049_83242114_83243152_83251190
43701	chr17	-	1367	8	NNC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_5	931.409224163656	9	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGATGTTTTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	80514732	80508743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80512166_80512690_80512868_80513276_80513458_80514603
43702	chr14	-	3455	20	NNC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	100	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	71.8974723992167	1	130	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACCAAGTGTGAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	70391160	70375620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377312_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379387_70379620_70379808_70379981_70380373_70380538_70380847_70380940_70381032_70381260_70383291_70383381_70388718_70388853_70389009_70389125_70389328_70389393_70389812_70389914_70390112_70390207_70391075
43703	chr11	-	2393	10	NIC	ENSMUSG00000018736.15	novel	2382	9	NA	NA	7	-17	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	74.7099742130432	151	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	68743954	68712276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_68713492_68716995_68717031_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
43706	chr15	-	2232	1	NIC	ENSMUSG00000014313.16	novel	503	4	NA	NA	127	1507	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAATTACAGTTACTTTT	530	False	NA	NA	False	NA	NA	NA	35937664	35935432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_35935400_35937700
43707	chr1	-	4787	9	ISM	ENSMUSG00000038331.16	ENSMUST00000114415.10	5805	11	23644	2	21626	0	3prime_fragment	FALSE	canonical	1	1	junction_2	2.44948974278318	24	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGACTTTGTTTGTCAA	NA	False	NA	NA	False	NA	NA	NA	56987373	56833146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_56836404_56870597_56870796_56884734_56884891_56889329_56889543_56910470_56910944_56930321_56930425_56937104_56937229_56938149_56938277_56987237
43708	chr9	+	3119	18	FSM	ENSMUSG00000035769.10	ENSMUST00000215822.2	3134	18	19	-4	1	4	multi-exon	FALSE	canonical	3	22	junction_2	17.3265002945415	72	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTCTCCTTGCTTCCC	NA	False	NA	NA	False	NA	NA	NA	119186653	119222399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119186774_119188297_119188381_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
43709	chr4	+	1499	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	22	1855	22	-791	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	4	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCCCTGTATGTATGAT	15	True	NA	NA	False	NA	NA	NA	40722501	40733109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
43710	chr2	+	3139	7	ISM	ENSMUSG00000027465.14	ENSMUST00000028963.14	3386	8	8351	7	-6020	-7	3prime_fragment	FALSE	canonical	3	152	junction_3	23.3523731841827	153	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAATCACTTGTCTTTGTA	543	False	NA	NA	False	NA	NA	NA	152144098	152155909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_152144258_152146865_152146947_152149908_152150096_152150249_152150352_152152305_152152448_152153236_152153425_152153629
43711	chr9	-	2750	4	Fusion	ENSMUSG00000079427.11_ENSMUSG00000102533.2	novel	801	3	NA	NA	20	-2723	multi-exon	TRUE	canonical	1	2	junction_1	215.864669539866	1261	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTATAGTTGTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	88601846	88567707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_88569512_88570489_88571039_88597540_88597803_88601711
43712	chr4	-	2470	9	NIC	ENSMUSG00000028232.14	novel	2773	9	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	7	junction_6	22.1722658968361	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATAAAATGAACAAGAAAAC	-11	True	NA	NA	False	NA	NA	NA	3574809	3549049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569464_3569630_3569753_3570320_3570373_3574703
43713	chr3	+	3089	12	NNC	ENSMUSG00000028121.9	novel	3311	12	NA	NA	170	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	47.3253203941951	129	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTATCCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	122213641	122323830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122213833_122220093_122220404_122248701_122248742_122298575_122298705_122301774_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323227
43714	chrX	+	1220	6	Antisense	novelGene_ENSMUSG00000031320.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTAGGGTCGGAGGCTGCG	NA	False	NA	NA	False	NA	NA	NA	101228551	101232955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_101228735_101229102_101229271_101230004_101230174_101230960_101231059_101231427_101231977_101232902
43715	chr16	+	471	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	53	281	53	0	multi-exon	FALSE	canonical	3	487	junction_1	5	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	NA	False	NA	NA	NA	9988144	9992494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_9988189_9988278_9988356_9992144
43717	chr2	+	1989	10	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-4190	-4	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	51.1086955950951	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGATTGTTGTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	180374020	180384069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180374366_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
43718	chr10	+	2277	7	FSM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	57	-343	8	343	multi-exon	FALSE	canonical	3	158	junction_5	12.6150263134442	174	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCAGGGCCTCCATTTTG	NA	False	NA	NA	False	NA	NA	NA	20223572	20237393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_20223670_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20230012_20233000_20233513_20236280
43719	chr17	-	1863	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	-10	55	-10	-4	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	554	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAATTTTGCTACTGCTA	NA	False	NA	NA	False	NA	NA	NA	47063150	47046685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
43720	chr12	-	4805	26	FSM	ENSMUSG00000061533.17	ENSMUST00000141429.8	4807	26	2	0	2	0	multi-exon	FALSE	canonical	3	41	junction_10	9.02405673741029	62	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAATGATGCGTCTGTT	6154	False	NA	NA	False	NA	NA	NA	91351181	90965265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_90966434_90975606_90975710_90986065_90986180_90989173_90989252_91029915_91029940_91050447_91050498_91180338_91180532_91197568_91197629_91200817_91200995_91222348_91222514_91226759_91227411_91233509_91233861_91256262_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336835_91336971_91348421_91348563_91351007
43721	chr6	-	3101	1	Antisense	novelGene_ENSMUSG00000029916.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTCAAATAGAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	40337105	40334004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_40334000_40337100
43722	chr19	+	1632	10	Antisense	novelGene_ENSMUSG00000024966.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCCCTTCTCCTTTAGCT	1852	False	NA	NA	False	NA	NA	NA	6998074	7013046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_6998549_6999018_6999187_6999389_6999499_6999639_6999650_7006261_7006373_7006475_7006601_7009846_7010022_7011538_7011671_7012014_7012155_7012858
43723	chr1	+	4710	1	ISM	ENSMUSG00000026596.14	ENSMUST00000166172.9	10151	13	85852	20	28916	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	58	34	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGCCATGTCTCACAA	1638	False	NA	NA	False	NA	NA	NA	156472408	156477118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_156472400_156477100
43725	chr4	-	1827	8	NIC	ENSMUSG00000029022.19	novel	1909	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	19	junction_4	85.7195236494807	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	NA	False	NA	NA	NA	147952983	147945247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147949645_147949728_147950111_147950472_147950691_147950877_147952825
43726	chr19	-	3247	2	Intergenic	novelGene_1252	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCATCTTTGTTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	38314441	38311060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_38312951_38313084
43727	chr11	-	3229	13	NNC	ENSMUSG00000001552.15	novel	3205	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	217.12456422268	1	202	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	100288593	100261444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100262276_100263121_100263288_100264850_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270441_100271363_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100277000_100277215_100288461
43728	chr9	+	3213	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	47	26	-1	-26	multi-exon	FALSE	canonical	3	154	junction_1	46.9081733954962	90	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAATGTTATCCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	14695996	14745916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
43729	chr8	+	1920	8	Antisense	novelGene_ENSMUSG00000022322.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCTCTTCCTCATCCCA	8195	False	NA	NA	False	NA	NA	NA	4786003	4804264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_4786408_4789124_4789269_4789596_4789681_4791846_4791969_4794447_4794578_4798703_4799461_4799551_4799783_4804216
43730	chr8	+	973	4	Intergenic	novelGene_1571	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACCAGAACGCGATGAC	NA	False	NA	NA	False	NA	NA	NA	4814527	4829547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_4815088_4817904_4818023_4818143_4818310_4829418
43732	chr5	-	2724	11	NNC	ENSMUSG00000029097.12	novel	3790	11	NA	NA	-640	-1137	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	31.6924281177697	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAGGAGCACTCACTA	6986	False	NA	NA	False	NA	NA	NA	35733054	35714683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730238_35731423_35731539_35732442
43735	chr15	-	1480	8	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	394	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	577.7606665005	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTGCAAATCCCGACC	NA	False	NA	NA	False	NA	NA	NA	83056399	83037713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038534_83044343_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
43736	chr15	-	4026	7	FSM	ENSMUSG00000022305.14	ENSMUST00000022916.13	4109	7	67	16	-15	-2	multi-exon	FALSE	canonical	3	34	junction_6	6.95221787153807	51	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGTACTTTTTAAATCAA	NA	False	NA	NA	False	NA	NA	NA	39807117	39734000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_39736275_39739482_39739616_39741190_39742296_39743515_39743719_39748401_39748538_39767934_39767992_39806999
43737	chr6	+	1090	3	NNC	ENSMUSG00000055912.9	novel	1478	7	NA	NA	3488	1440	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	106	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCACACGGGGCACTTG	NA	False	NA	-39	True	NA	NA	NA	72336696	72338185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72337624_72337855_72337933_72338099
43738	chr6	+	1964	7	NIC	ENSMUSG00000000439.10	novel	6230	8	NA	NA	22	-3939	combination_of_known_junctions	FALSE	canonical	1	4	junction_3	187.80168322521	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTATTCCTGGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	115578884	115595646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_115578975_115586541_115586671_115587479_115587662_115590287_115590503_115591535_115591647_115594258_115594404_115594554
43739	chr15	-	1085	1	NIC	ENSMUSG00000022350.8	novel	2618	19	NA	NA	18891	-557	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCATGTGCACAGTAAGG	NA	False	NA	NA	False	NA	NA	NA	59205487	59204402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_59204400_59205500
43740	chr6	-	1951	8	NIC	ENSMUSG00000030002.16	novel	6435	9	NA	NA	-7	1091	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	95.4484581502777	5	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTGCCCAAACTTTAG	7373	False	NA	NA	False	NA	NA	NA	85938596	85923633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_85924759_85926599_85926780_85926999_85927076_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
43741	chr11	-	1116	5	NNC	ENSMUSG00000020857.12	novel	1012	5	NA	NA	-121	0	at_least_one_novel_splicesite	FALSE	canonical	1	44	junction_3	3086.14924906428	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	NA	False	NA	NA	False	NA	NA	NA	93846730	93840639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_93840873_93842725_93842839_93843625_93843728_93845861_93846451_93846651
43742	chr17	-	1472	13	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	-3	-89	intron_retention	FALSE	non_canonical	0	0	junction_7	684.674674368946	1	22	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCGTGTGGGCCAAACCA	5753	False	NA	NA	False	NA	NA	NA	33904380	33869043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884519_33884620_33885467_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
43745	chr11	+	2850	10	NNC	ENSMUSG00000059248.14	novel	647	4	NA	NA	1517	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	202.139360312766	1	138	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTTTTTTTCTGGAGTT	NA	False	NA	NA	False	NA	NA	NA	117224770	117253135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117224830_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
43747	chr8	+	1221	9	NNC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	7	170	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	671.62861761542	16	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCGTCATCGTGCCA	NA	False	NA	NA	False	NA	NA	NA	95584135	95590539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589407_95589513_95590079
43748	chr13	-	2567	13	NNC	ENSMUSG00000025453.19	novel	3122	15	NA	NA	19	-83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	79.5831151829471	1	80	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGTAGCTTCGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	119545514	119472066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502862_119503043_119505011_119505145_119518199_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119545438
43751	chr19	-	2634	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	3	1	intron_retention	FALSE	canonical	3	822	junction_6	66.7799038300862	8	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTGGAAAAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	41921732	41912003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41921604_41921690
43752	chr2	-	1891	6	NIC	ENSMUSG00000003662.11	novel	3075	7	NA	NA	49	59	intron_retention	FALSE	canonical	3	164	junction_2	21.6055548412902	47	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAATAAGAGCTTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	127089687	127084480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_127084958_127086832_127086921_127087642_127088422_127088521_127088634_127088929_127089079_127089401
43754	chr5	-	3665	21	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	29	-1969	at_least_one_novel_splicesite	FALSE	non_canonical	3	6	junction_20	174.668793721145	225	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGGGTGATTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	27996660	27947046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_27947498_27949108_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001_27977623_27980563_27980678_27986419_27986484_27988727_27988772_27993640_27993776_27996524
43755	chr10	-	2373	1	FSM	ENSMUSG00000085666.4	ENSMUST00000121229.2	1194	1	370	-1549	370	1549	mono-exon	FALSE	NA	NA	NA	NA	NA	1	74	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGATTTAAAAAAAAAAAAAA	2832	False	NA	NA	False	NA	NA	NA	41930932	41928559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41928600_41930900
43756	chr15	-	1780	14	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	-9	69	at_least_one_novel_splicesite	FALSE	canonical	1	29	junction_9	456.620866129238	1	80	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGGCAGAGCAGGCCTCT	2736	False	NA	NA	False	NA	NA	NA	77855022	77843712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850409_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
43757	chr10	-	2638	24	NNC	ENSMUSG00000025357.9	novel	2834	24	NA	NA	-6357	-5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_23	19.3991015713857	70	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAAGCCCTCCCGCAAG	5214	False	NA	NA	False	NA	NA	NA	128573273	128556009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128573182
43758	chr1	+	3272	6	FSM	ENSMUSG00000040918.13	ENSMUST00000159230.8	3432	6	160	0	-38	0	multi-exon	FALSE	canonical	3	46	junction_2	97.8296478578963	133	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTTTCACTCAGAA	NA	False	NA	NA	False	NA	NA	NA	164076783	164092938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_164077026_164084315_164084805_164088360_164088587_164089615_164089809_164090188_164090331_164090958
43759	chr18	-	1576	8	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	-9	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.375952558535	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTGTCTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	38471999	38460608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38460779_38461436_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
43761	chr6	+	2458	19	FSM	ENSMUSG00000030269.15	ENSMUST00000113146.9	2676	19	28	190	20	6	multi-exon	TRUE	canonical	3	298	junction_17	28.028204489649	370	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATTAGCATTTCATCC	1996	False	NA	NA	False	NA	NA	NA	113214831	113258163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750_113254907_113257563
43762	chr17	+	1325	3	ISM	ENSMUSG00000040312.15	ENSMUST00000045956.14	2748	19	12210	19	494	0	3prime_fragment	FALSE	canonical	3	132	junction_1	12	29	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTGGAGATGTTTGAG	4634	False	NA	NA	False	NA	NA	NA	35840282	35841893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35841197_35841340_35841456_35841597
43763	chr13	+	4452	4	ISM	ENSMUSG00000039087.18	ENSMUST00000037232.8	8395	12	42456	1032	-15689	-1032	3prime_fragment	FALSE	canonical	3	43	junction_1	7.03957069398096	4	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGTCAAACCCAGCTCC	6477	False	NA	NA	False	NA	NA	NA	38115302	38134938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_38116466_38125518_38125681_38130832_38131640_38132618
43764	chr16	-	2287	18	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	289.820825212136	1	110	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCAGACGTTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	3895682	3857838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861986_3862519_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
43765	chr9	+	3852	10	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	-1974	-1	intron_retention	FALSE	canonical	3	282	junction_3	35.3609256344965	5	116	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGGCTCTGGCTGTAT	NA	False	NA	NA	False	NA	NA	NA	107835615	107848723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107847252_107847667_107847818_107847906_107847958_107848172
43766	chr3	+	2115	3	Intergenic	novelGene_3122	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	10.5	5	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTTTTGTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	51519003	51534606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_51519090_51532025_51532159_51532710
43767	chr5	-	3203	5	NNC	ENSMUSG00000066640.12	novel	2831	5	NA	NA	21	0	intron_retention	FALSE	canonical	0	0	junction_3	12.3768937944866	42	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTCTCCAGGATGTT	NA	False	NA	NA	False	NA	NA	NA	142880972	142857543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142858276_142864412_142864632_142871293_142873231_142874423_142874631_142880864
43770	chr11	-	731	4	Antisense	novelGene_ENSMUSG00000020677.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCCTCCCGGCGCCTGCG	NA	False	NA	NA	False	NA	NA	NA	83837223	83832985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_83833094_83834071_83834266_83835359_83835494_83836928
43771	chr17	-	2327	6	NNC	ENSMUSG00000063383.6	novel	2872	5	NA	NA	292	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9.45304183847718	2	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACTTGGCTGTTTCCAT	NA	False	NA	NA	False	NA	NA	NA	22384879	22363340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22364774_22365025_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
43772	chr4	+	1666	9	Antisense	novelGene_ENSMUSG00000028494.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTACAAGAAGAGCAGGAGC	8207	False	NA	NA	False	NA	NA	NA	86566646	86588456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_86566819_86575353_86575642_86576817_86576955_86578327_86578507_86580170_86580453_86582667_86582749_86586603_86586800_86586886_86586942_86588180
43773	chr4	+	1023	8	ISM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	143	9025	1	4	5prime_fragment	FALSE	canonical	3	1488	junction_7	138.160066884873	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCTAGAGAAAGATGAAGAC	856	False	NA	NA	False	NA	NA	NA	129083695	129104375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285
43776	chr10	+	1788	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	0	672	0	-672	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	347	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAGTACATTCCTGAGTT	1769	False	NA	NA	False	NA	NA	NA	79824417	79831224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
43778	chr3	+	1944	12	NNC	ENSMUSG00000028180.19	novel	2737	11	NA	NA	10	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	343.808903292906	171	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTGTTGTTTATTAGAA	NA	False	NA	NA	False	NA	NA	NA	157240034	157253978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311_157252541_157253288
43779	chr19	-	1750	7	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	49	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1239.44848846394	1	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGTGAATTATTCTGC	NA	False	NA	NA	False	NA	NA	NA	15902374	15882485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883511_15892329_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
43780	chr2	-	3251	1	Intergenic	novelGene_2742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTTTGGGCTATTTGTT	NA	False	NA	87	True	NA	NA	NA	154726156	154722905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_154722900_154726200
43782	chr7	+	2097	16	FSM	ENSMUSG00000002963.18	ENSMUST00000003044.14	2184	16	16	71	2	-71	multi-exon	FALSE	canonical	3	182	junction_9	24.7059147214229	720	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAACTAGCCTGATGAGC	9351	False	NA	NA	False	NA	NA	NA	44506598	44512345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
43784	chr16	+	2708	18	NNC	ENSMUSG00000022682.9	novel	3582	18	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	259.956677253043	1	137	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGACTACTGTGTTGAATT	NA	False	NA	NA	False	NA	NA	NA	13598584	13632700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629497_13631839
43785	chr18	+	1730	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	1	16	1	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	3	103	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179714	48181444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181400
43786	chr12	+	2882	13	NNC	ENSMUSG00000037486.19	novel	8887	12	NA	NA	22	-1787	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	31.6635963423824	2	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTCTAATAAGAATGCAC	NA	False	NA	NA	False	NA	NA	NA	3476933	3550679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3477213_3492473_3492562_3501661_3501771_3505546_3505641_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
43787	chr11	-	1750	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	84	1189	-16	-153	multi-exon	TRUE	canonical	3	225	junction_2	27.6394193137265	411	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAAGTGTGCTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	23447946	23439735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
43788	chr4	-	3673	7	FSM	ENSMUSG00000028833.14	ENSMUST00000030637.14	3681	7	0	8	0	-8	multi-exon	FALSE	canonical	3	145	junction_6	31.1216252074913	93	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCCTCCTTTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	126647202	126637550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126646763
43789	chr13	+	3209	5	NNC	ENSMUSG00000110393.3	novel	1597	4	NA	NA	-247	1831	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.7727085208393	37	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAGAAAATCCCAGCGT	NA	False	NA	NA	False	NA	NA	NA	65389319	65399799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_65389830_65395454_65395582_65395782_65395844_65396789_65396883_65397381
43790	chr4	-	1604	4	NIC	ENSMUSG00000003038.16	novel	711	5	NA	NA	2	-13	intron_retention	FALSE	canonical	3	2248	junction_2	397.824081724573	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGCTTGGAATGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	133695217	133692061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133692885_133693261_133693358_133693739_133694313_133695105
43791	chr17	+	3747	7	NIC	ENSMUSG00000005936.20	novel	3853	7	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	196.672033825068	1	169	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTCTTGTTATTTAATA	NA	False	NA	NA	False	NA	NA	NA	29171451	29188520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29171544_29180387_29180615_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
43793	chr9	+	884	7	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1513	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9220.41135500773	1	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64082187	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082195_64083399_64083494_64084226_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
43794	chrX	+	1957	9	NNC	ENSMUSG00000019087.14	novel	2189	10	NA	NA	-3	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	228.052625505606	1	73	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTGTTGCCTTGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	73340764	73348282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73340928_73341228_73341356_73344233_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
43796	chr2	-	3152	21	NNC	ENSMUSG00000074796.11	novel	3196	21	NA	NA	34	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	36.6080592219801	3	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTATGCTTTCACATGC	NA	False	NA	NA	False	NA	NA	NA	130539355	130526047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538410_130538574_130539278
43797	chr1	-	2581	2	FSM	ENSMUSG00000020423.7	ENSMUST00000020692.7	2743	2	-1	163	-1	-163	multi-exon	FALSE	canonical	3	77	junction_1	0	159	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAATGTGTAGAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	134006859	134003070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_134005442_134006649
43798	chr17	-	2871	3	Intergenic	novelGene_148	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	153.5	2	125	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAAAGGTTGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	35219810	35215708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35218446_35219142_35219186_35219719
43799	chr2	-	1852	12	Antisense	novelGene_ENSMUSG00000065272.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTAGCGCGCTCTGGCGCG	NA	False	NA	NA	False	NA	NA	NA	130121215	130116363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_130116396_130116552_130116635_130116942_130117064_130117579_130117743_130117893_130118096_130118353_130118546_130118626_130118778_130118950_130119051_130119393_130119542_130119762_130119888_130120072_130120207_130120813
43800	chr8	+	3445	8	ISM	ENSMUSG00000036054.16	ENSMUST00000164403.8	4099	10	2466	852	304	787	internal_fragment	FALSE	canonical	3	99	junction_5	8.10391691639019	2	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGAGGCAGGGAAATTGT	3558	False	NA	NA	False	NA	NA	NA	70689341	70712840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332
43801	chr8	+	2549	17	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	91549	10	91549	-10	3prime_fragment	FALSE	canonical	3	106	junction_1	28.5097982060554	2	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCGTTAAGCGTTCTGTA	7165	False	NA	NA	False	NA	NA	NA	118316578	118361871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
43802	chr4	+	2700	2	NIC	ENSMUSG00000028703.15	novel	3065	10	NA	NA	6507	1920	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGGCTCGCTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	115953185	115956160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_115955862_115956136
43803	chr12	+	1554	12	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	100.423977249517	77	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTCCGGGATCTGTGC	NA	False	NA	NA	False	NA	NA	NA	85157655	85180860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175120_85180129
43804	chr8	+	2212	14	NNC	ENSMUSG00000031584.17	novel	2673	13	NA	NA	388	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	476.310922270901	186	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTGTCAGTGTATTTT	790	False	NA	NA	False	NA	NA	NA	34143653	34188190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_34143706_34143777_34143808_34159180_34159208_34159920_34160010_34161550_34161621_34164114_34164263_34170290_34170346_34171492_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
43805	chr5	-	2628	20	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	160.046721017918	1	125	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGGCCTGTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	30359973	30324424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324959_30325042_30325119_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337288_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347827_30349148_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
43806	chr10	+	1317	7	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	1	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2104.11483104469	4	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATGGTCTTTATTTTTC	NA	False	NA	NA	False	NA	NA	NA	126899483	126903152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901936_126902106_126902797
43808	chr14	+	3005	9	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	17	-1892	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	180.243195086527	2	130	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATCTTTTAAATGTGCA	NA	False	NA	NA	False	NA	NA	NA	52517038	52531966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52529103_52529676_52529976_52530141_52530657
43809	chr15	+	2377	8	NNC	ENSMUSG00000023034.8	novel	2477	7	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	74.1897732101911	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	101164728	101172676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101164853_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876_101172435_101172532
43810	chr11	+	1511	12	NNC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	7	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	344.149664732565	4	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAAGGCTCCTTTCCTT	1431	False	NA	NA	False	NA	NA	NA	120675137	120679926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120675169_120675946_120676040_120676525_120676576_120677460_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
43811	chr2	+	1941	9	NNC	ENSMUSG00000033411.17	novel	1236	9	NA	NA	15	3994	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_8	129.986958480457	7	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTTTGTTGCTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	121786906	121828671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121827912
43812	chr9	+	1991	5	FSM	ENSMUSG00000025647.17	ENSMUST00000198639.2	2010	5	7	12	7	-12	multi-exon	FALSE	canonical	3	153	junction_2	33.0302891298275	248	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACCCGCTTCCCCTT	NA	False	NA	NA	False	NA	NA	NA	108867676	108886780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885574_108885717
43813	chr19	-	2560	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	107	-1553	70	1553	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTATGGGTGTCCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	24257862	24237263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
43814	chr4	-	1275	3	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	468	103	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224589	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219156_127219712_127220565_127224294
43815	chr7	-	2275	8	NNC	ENSMUSG00000047554.15	novel	2774	9	NA	NA	-6	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	136.64029943092	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGATAATACTGATCAATA	NA	False	NA	NA	False	NA	NA	NA	109585488	109572709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_109573506_109573584_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
43816	chr2	+	2382	6	NIC	ENSMUSG00000008333.13	novel	2061	7	NA	NA	4	-1116	intron_retention	FALSE	canonical	3	784	junction_1	114.700305143448	63	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTCTGTTTACTGGTTTA	2014	False	NA	NA	False	NA	NA	NA	142904984	142913657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142912897_142913315
43817	chr3	-	3935	9	FSM	ENSMUSG00000038766.17	ENSMUST00000107209.8	8357	9	-45	4467	0	1356	multi-exon	FALSE	canonical	3	10	junction_7	6.12244844812923	69	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACCACAAAAATTAGACA	8938	False	NA	NA	False	NA	NA	NA	95125065	95093543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95123524_95123580_95124899
43818	chr17	-	989	7	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-11	intron_retention	FALSE	non_canonical	0	0	junction_1	3733.93302103232	37	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTATACAGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	45884199	45878711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878799_45881345_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
43819	chr8	+	2322	3	ISM	ENSMUSG00000031783.11	ENSMUST00000211957.2	855	5	-938	158	-938	-144	intron_retention	FALSE	canonical	3	1933	junction_1	27.5	1	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGAAGCCGGAGCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	95587074	95590025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_95588468_95588809_95588862_95589148
43822	chr16	-	1718	9	Antisense	novelGene_ENSMUSG00000022800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTCGCCCTCCCACCTCC	NA	False	NA	NA	False	NA	NA	NA	32726831	32698147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32698366_32704492_32704620_32711628_32711781_32715451_32715568_32718743_32718839_32719245_32719310_32721002_32721078_32722788_32722904_32726075
43823	chrX	-	1993	1	Intergenic	novelGene_3994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCGGATTTCTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	100571437	100569444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_100569400_100571400
43825	chr8	+	2204	4	NIC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	0	-8	intron_retention	FALSE	canonical	3	65	junction_2	17.9691092959247	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATAGACACAGGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	126460976	126474966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_126461089_126462806_126464159_126471974_126472185_126474436
43826	chr13	+	4315	16	FSM	ENSMUSG00000021611.10	ENSMUST00000022104.9	4313	16	-5	3	0	-3	multi-exon	FALSE	canonical	3	21	junction_2	5.35163526410386	36	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTCTGTCATACTAAT	2123	False	NA	NA	False	NA	NA	NA	73775029	73797959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_73775368_73775469_73776794_73782270_73782467_73783538_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028
43827	chr6	+	2270	3	ISM	ENSMUSG00000030120.15	ENSMUST00000203060.2	593	5	-189	-835	-189	-16	intron_retention	FALSE	canonical	3	3577	junction_1	148.5	5	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAGAATGGAAAAAAGTGA	NA	False	NA	NA	False	NA	NA	NA	124909397	124913091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_124909776_124910916_124910971_124911253
43829	chr12	-	1867	3	NNC	ENSMUSG00000020973.8	novel	3390	3	NA	NA	1376	-20	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	137.5	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATTCATTGAGTTAA	NA	False	NA	NA	False	NA	NA	NA	69243827	69235880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_69237169_69239581_69239726_69243392
43830	chr3	-	3597	19	NNC	ENSMUSG00000027889.18	novel	3586	19	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	62.217584152535	1	152	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGCATGTGAAGGTGT	NA	False	NA	NA	False	NA	NA	NA	107993978	107981379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983404_107983669_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
43834	chr12	+	1900	10	FSM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	-4	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	140.228473183437	863	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGCAGTGATGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	109506883	109538155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
43835	chr10	+	1164	9	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	20	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	1329.44572566916	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2072	False	NA	NA	False	NA	NA	NA	61484350	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61484571_61487338_61487398_61499474_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
43836	chr13	-	2384	13	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-12	5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_12	43.4360161617062	19	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAAGAATTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	74210392	74185818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74208498_74208708_74210302
43838	chr18	+	1540	3	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	19	-160	intron_retention	FALSE	canonical	3	6761	junction_1	1890.5	23	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCATGGCCCGGGAATA	NA	False	NA	NA	False	NA	NA	NA	75133566	75136291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_75133615_75134261_75135194_75135731
43839	chr10	+	2104	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	23	0	-8	0	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	NA	NA	NA	43097504	43316598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
43840	chr12	+	2493	6	ISM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	111	1	89	-1	intron_retention	FALSE	canonical	3	155	junction_3	35.625833323587	9	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACATCTAGTTTGAGTT	NA	False	NA	NA	False	NA	NA	NA	28699711	28709587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631
43841	chr3	+	1645	5	NIC	ENSMUSG00000001418.14	novel	4219	6	NA	NA	15	75	intron_retention	FALSE	canonical	3	936	junction_3	69.2549637210215	2266	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGTATGTATTTTATTA	4010	False	NA	NA	False	NA	NA	NA	88232344	88235963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88232509_88232983_88233239_88233421_88233937_88235163_88235421_88235509
43842	chr5	+	1034	4	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-15	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1307.04305803426	88	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650830	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652588_45668472_45668560_45669222
43844	chr2	-	3201	18	FSM	ENSMUSG00000042272.18	ENSMUST00000102659.2	2720	18	-5	-476	-5	476	multi-exon	FALSE	canonical	3	86	junction_17	13.2907335619941	72	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGCTTTTATGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	77110941	77016422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_77017605_77018843_77018966_77021304_77021497_77022042_77022166_77022842_77022925_77027166_77027327_77028632_77028748_77029209_77029405_77036549_77036673_77042703_77042916_77045405_77045462_77047266_77047365_77048432_77048547_77061007_77061122_77064992_77065084_77071956_77072066_77075360_77075431_77110898
43845	chr2	-	2240	6	ISM	ENSMUSG00000038671.16	ENSMUST00000048269.12	1087	7	277	-923	224	595	3prime_fragment	FALSE	canonical	3	258	junction_2	25.0790749430676	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCATCCCTTCAATCAGT	6437	False	NA	NA	False	NA	NA	NA	181006836	181000297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_181001355_181001431_181001533_181002793_181003266_181005806_181005890_181006103_181006192_181006397
43847	chr17	-	453	1	Intergenic	novelGene_136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGACTAAGATCTGTGT	NA	False	NA	NA	False	NA	NA	NA	33093732	33093279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_33093300_33093700
43848	chr16	-	2659	13	NNC	ENSMUSG00000003526.13	novel	2386	14	NA	NA	1	-6	intron_retention	FALSE	canonical	0	0	junction_5	37.4198216932625	196	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCATCACCTTTCTCTT	8073	False	NA	NA	False	NA	NA	NA	17907026	17889595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895642_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898940_17899394_17899430_17902410_17902620_17906751
43849	chr2	-	1883	13	NNC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	-10	8	at_least_one_novel_splicesite	TRUE	canonical	3	27	junction_6	11.513277359447	130	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTGTCTCTTGTCTGTC	7301	False	NA	NA	False	NA	NA	NA	154400796	154386310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388837_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
43851	chr9	+	1568	7	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	46	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	369.143151997523	65	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATTGCCTCTTAGGTT	5558	False	NA	NA	False	NA	NA	NA	35122496	35128300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124777_35127601
43852	chr5	-	465	2	ISM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	21	3485	-16	186	5prime_fragment	FALSE	canonical	3	267	junction_1	0	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTTAGGTTAGGTTA	7999	False	NA	NA	False	NA	NA	NA	114266258	114265480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_114265831_114266143
43854	chr8	+	1787	7	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-9	622	multi-exon	FALSE	canonical	0	0	junction_4	500.079243720433	18	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCTCTGCCTGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	19834752	20056120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036156_20045732_20045996_20052877_20053142_20055368_20055417_20055523
43855	chr2	+	1026	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	42	1128	-11	-190	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGCAGCCTAACCGTAGG	NA	False	NA	NA	False	NA	NA	NA	29717395	29733886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
43856	chr11	+	1510	6	ISM	ENSMUSG00000017499.16	ENSMUST00000093937.3	2559	12	5641	1	5641	-1	3prime_fragment	FALSE	canonical	3	564	junction_3	57.0473487552226	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTGTCTGGGCTGCATTT	5410	False	NA	NA	False	NA	NA	NA	98804617	98812718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
43859	chr2	+	2802	19	NIC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	23	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_11	38.3467367871403	126	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	NA	False	NA	NA	NA	32126624	32145017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
43860	chr11	-	1289	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	401.071704806876	1	43	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTGAGTGCAGATCTT	NA	False	NA	NA	False	NA	NA	NA	119190847	119179191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179702_119183692_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
43862	chr16	+	3297	20	FSM	ENSMUSG00000005899.15	ENSMUST00000006053.13	4623	20	-7	1333	-7	148	multi-exon	FALSE	canonical	2	4	junction_11	83.2673829522215	1	115	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGATTGTCTGGGCTGAA	NA	False	NA	NA	False	NA	NA	NA	17437210	17461359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17453345_17453433_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
43863	chr1	-	1721	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	-16	0	-16	0	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	656	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTCTCATTTTATTTT	7188	False	NA	NA	False	NA	NA	NA	34478769	34475750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
43864	chr7	+	2540	1	Antisense	novelGene_ENSMUSG00000019429.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATATAAAGTAGAGTCTG	455	False	NA	NA	False	NA	NA	NA	30553756	30556296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30553800_30556300
43865	chr6	-	1127	7	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2185.89687288511	6	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9991	False	NA	NA	False	NA	NA	NA	125471729	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438274_125439276_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
43866	chr10	+	2267	9	NNC	ENSMUSG00000020260.10	novel	2290	9	NA	NA	-18	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	56.1716120473678	560	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAAAGCTGCAGTCCTAG	NA	False	NA	NA	False	NA	NA	NA	77095133	77105402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101867_77102746_77102928_77103022_77103142_77104360
43867	chr8	-	3317	7	FSM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	102	11	49	-11	multi-exon	FALSE	canonical	3	211	junction_4	26.1002341411379	107	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTCTAAGACTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	22888511	22865577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22888455
43868	chr9	+	1484	6	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	28	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	399.861275944546	57	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5540	False	NA	NA	False	NA	NA	NA	35122478	35128306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35127611
43870	chr10	+	1710	1	Intergenic	novelGene_3552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACCTACAAAGTTACT	3129	False	NA	NA	False	NA	NA	NA	120367284	120368994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120367300_120369000
43871	chr15	+	1755	10	NNC	ENSMUSG00000022295.9	novel	2071	13	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	479.953469966968	11	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTGCTAGTCATTTA	223	False	NA	NA	False	NA	NA	NA	38662215	38692686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681393_38689368_38689467_38690776_38690904_38691855
43873	chr1	+	1913	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-5	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	525.058869391357	1	86	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTATTATAAGGCAGT	NA	False	NA	NA	False	NA	NA	NA	59724156	59750655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743278_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
43874	chr2	+	6163	21	NIC	ENSMUSG00000001998.16	novel	4600	21	NA	NA	1	1590	combination_of_known_junctions	TRUE	canonical	3	6	junction_1	12.6218065268011	72	75	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTCAGTCTGTATGTTT	NA	False	NA	NA	False	NA	NA	NA	126850672	126911419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_126850821_126853714_126853783_126856089_126856214_126861205_126861280_126870091_126870214_126875449_126875610_126876963_126877131_126879705_126879780_126885340_126885464_126885566_126885677_126888067_126888208_126888765_126888879_126888962_126889082_126891179_126891483_126894099_126894215_126898100_126898225_126902181_126902441_126903445_126903959_126905189_126905381_126906791_126906950_126908461
43875	chr16	+	2138	6	FSM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	40	216	-13	-216	multi-exon	TRUE	canonical	3	47	junction_1	4.9152822909778	175	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAATGGTTGCTTAGTA	NA	False	NA	NA	False	NA	NA	NA	13804507	13919148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
43876	chr19	-	2404	1	NIC	ENSMUSG00000035885.6	novel	550	2	NA	NA	-27	-14	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGCTCCAGAAATGCATC	7412	False	NA	NA	False	NA	NA	NA	7194935	7192531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7192500_7194900
43877	chr11	-	1620	9	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	26	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	372.905463053305	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGATTTGTTTGCTAC	NA	False	NA	NA	False	NA	NA	NA	115977772	115969450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115969965_115970069_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
43878	chr16	-	1672	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	80	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	100.640311119463	5	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGAGTTATTCTTTTC	3968	False	NA	NA	False	NA	NA	NA	18245274	18225627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18226075_18226294_18226791_18229432_18229565_18229876_18229993_18230026_18230071_18230439_18230708_18245105
43879	chr11	+	2271	16	NIC	ENSMUSG00000018906.15	novel	2230	16	NA	NA	13	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	21.6234440673389	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGAAGCCTTAAATAGCC	NA	False	NA	NA	False	NA	NA	NA	53991829	54022471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001998_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
43880	chrX	-	1706	4	Antisense	novelGene_ENSMUSG00000001131.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTGGCGGGGAAATCAC	NA	False	NA	NA	False	NA	NA	NA	20740972	20736480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20736559_20737266_20737401_20739287_20739414_20739604
43881	chr7	+	3142	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	37	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	129.782788974693	1	172	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTAGCTGTTCTAGTTTC	1027	False	NA	NA	False	NA	NA	NA	97130256	97190599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97130358_97134126_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175931_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
43882	chr5	+	2796	18	NIC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	119	-109	intron_retention	FALSE	canonical	3	142	junction_1	18.8994791308831	2	83	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGAGTCCGTGAGTCCA	NA	False	NA	NA	False	NA	NA	NA	137016448	137025393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
43883	chr17	-	2522	7	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-5	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	36.6272515424725	2	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTTGGACTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	22181437	22145944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22146996_22147668_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22172964_22181236
43884	chr12	+	1188	6	ISM	ENSMUSG00000072946.13	ENSMUST00000147363.8	1869	9	27	3483	1	391	5prime_fragment	FALSE	canonical	3	204	junction_5	25.5656018900397	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAACCCTGAGTTGAGTAG	NA	False	NA	NA	False	NA	NA	NA	84332174	84353244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699
43886	chr17	-	3421	2	NIC	ENSMUSG00000100572.2	novel	764	3	NA	NA	11	2449	intron_retention	FALSE	canonical	3	57	junction_1	0	90	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACATCCCACAGCCAAT	NA	False	NA	NA	False	NA	NA	NA	69584192	69579907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_69583191_69584054
43888	chr8	-	1061	11	NNC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	3	0	intron_retention	FALSE	non_canonical	0	0	junction_5	1223.6428400477	25	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321103	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299345_84299696_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
43889	chr18	-	2202	2	Antisense	novelGene_ENSMUSG00000117732.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGTCCAGCTACGGAAGCC	NA	False	NA	NA	False	NA	NA	NA	77029299	77017747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77017912_77027261
43890	chr10	+	1566	11	FSM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	-95	2	-95	0	multi-exon	FALSE	canonical	3	28	junction_1	64.3808201252516	700	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	59839053	59935808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
43893	chr9	+	2601	15	FSM	ENSMUSG00000032547.13	ENSMUST00000035142.8	2852	15	227	24	217	-24	multi-exon	TRUE	canonical	3	312	junction_7	39.7877019252155	244	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATATGCTGGTATTCAA	NA	False	NA	NA	False	NA	NA	NA	102712397	102785128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_102712439_102739072_102739195_102744753_102744854_102746472_102746608_102748926_102748981_102752937_102753083_102758852_102758954_102763201_102763328_102765668_102765756_102768414_102768485_102774400_102774534_102775657_102775768_102775889_102776050_102783235_102783373_102784048
43894	chr16	-	2954	17	Antisense	novelGene_ENSMUSG00000043065.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	122	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTCCGGGCCGTTGCCT	NA	False	NA	NA	False	NA	NA	NA	44207595	44167784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_44167870_44175807_44175899_44176507_44176556_44178122_44178258_44185938_44186047_44186891_44187014_44188003_44188108_44190240_44190384_44190995_44191307_44192894_44193027_44196002_44196154_44197158_44197384_44199216_44199685_44202367_44202560_44205032_44205135_44205979_44206068_44207146
43897	chr11	-	1619	12	NNC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	28	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	256.522226897713	20	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTGAATGTTAATGTGT	NA	False	NA	NA	False	NA	NA	NA	59730550	59708629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721134_59723709_59723760_59723857_59723971_59727688_59727847_59730495
43900	chr12	+	1337	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	41	-1	29	1	multi-exon	FALSE	canonical	3	2699	junction_7	143.152890295656	125	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	NA	False	NA	NA	NA	87313512	87320754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
43901	chr16	+	2582	9	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	-17	-5	intron_retention	FALSE	canonical	3	39	junction_3	52.6721878698806	4	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCAGCCATCTTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	8288634	8308055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522
43902	chr12	-	570	5	NNC	ENSMUSG00000020648.4	novel	1773	7	NA	NA	0	-40	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_1	50.6260802353886	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAATGGAATAGATATTAA	9080	False	NA	NA	False	NA	NA	NA	31704805	31696657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31696738_31697520_31697621_31698764_31698887_31702289_31702441_31704688
43903	chr5	+	3049	17	NNC	ENSMUSG00000014668.16	novel	3159	18	NA	NA	129	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.238116788253	1	133	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTGTTGTACTCCTGT	NA	False	NA	NA	False	NA	NA	NA	110283919	110319836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110284051_110288227_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306783_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
43906	chr1	-	1790	17	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	8	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	455.071418673762	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATCTGACTCCTTGCGT	NA	False	NA	NA	False	NA	NA	NA	78465466	78401731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420389_78431412_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452831_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
43907	chr2	-	1302	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	114	1126	10	-1118	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTGTCAGAGAAACGTG	3746	False	NA	NA	False	NA	NA	NA	154734741	154714455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
43908	chr6	-	1648	9	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	-23	125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1355.61535266277	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTTTTTTGTAACATGAA	NA	False	NA	NA	False	NA	NA	NA	39397255	39375951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032_39397075_39397117
43909	chr6	+	2268	17	NIC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-37	-60	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	52.6289710496985	190	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTTCTTTTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	58572922	58669436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_58573003_58573959_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
43910	chr5	+	1803	5	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	-12	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	264.617058218097	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	NA	False	NA	NA	False	NA	NA	NA	143389580	143407659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143389808_143398245_143398347_143403804_143403964_143405235_143405448_143406555
43911	chr7	-	1492	3	NNC	ENSMUSG00000110215.2	novel	986	6	NA	NA	-631	-1695	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCTAGCACTCACTATC	NA	False	NA	NA	False	NA	NA	NA	11122142	11118877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_11120262_11121477_11121512_11122068
43913	chr4	+	1838	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	-29	-664	0	-7	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	1858	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATGTTCCCTGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	118266533	118272972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
43914	chr5	+	1249	11	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	1477	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	547.560124552546	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTGCTTCCAGATCTC	NA	False	NA	NA	False	NA	NA	NA	21991757	22008783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004466_22005570_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
43915	chr18	+	1295	5	FSM	ENSMUSG00000042705.10	ENSMUST00000234085.2	494	5	-20	-781	0	-6	multi-exon	FALSE	canonical	3	159	junction_2	523.690271057235	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAACTCAAGCGTACAAT	NA	False	NA	NA	False	NA	NA	NA	47091924	47221056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_47091996_47093482_47093574_47123545_47123657_47219318_47219379_47220094
43916	chr3	-	1426	9	NNC	ENSMUSG00000027835.12	novel	1927	8	NA	NA	7	151	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	624.200776493429	104	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAACATTTCTTTACTTG	NA	False	NA	NA	False	NA	NA	NA	75464137	75424431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75424909_75425616_75425777_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
43919	chr14	-	1742	9	ISM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	3415	14	3415	1	3prime_fragment	FALSE	canonical	3	193	junction_5	15.0312175155574	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTTAGTAGTCCTG	4217	False	NA	NA	False	NA	NA	NA	55947130	55937489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850
43920	chr13	-	1438	13	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	69	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1041.72795819681	1	35	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334734	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97314387_97314469_97315851_97315925_97317589_97317682_97318407_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
43921	chr5	+	2643	14	NNC	ENSMUSG00000029179.15	novel	2485	13	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	38.4016456747956	4	70	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTTTCAGTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	52940417	52982004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52959956_52960140_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
43922	chr7	+	2468	5	FSM	ENSMUSG00000030868.7	ENSMUST00000123602.2	2506	5	22	16	4	-16	multi-exon	FALSE	canonical	3	258	junction_4	38.4740172064213	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACGTAAAACATCCTGG	NA	False	NA	NA	False	NA	NA	NA	121732298	121748251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
43923	chr16	+	4716	8	FSM	ENSMUSG00000026181.14	ENSMUST00000027373.12	4922	8	124	82	19	-82	multi-exon	FALSE	canonical	3	74	junction_7	6.62093155786084	2	217	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAACTCCCAAGGTGATGA	NA	False	NA	NA	False	NA	NA	NA	16714456	16745146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_16714489_16721187_16721456_16728802_16728946_16731897_16732101_16733023_16733213_16735523_16735668_16740326_16740421_16741503
43924	chr17	-	2974	10	FSM	ENSMUSG00000039316.15	ENSMUST00000044503.14	4029	10	355	700	178	303	multi-exon	FALSE	canonical	3	80	junction_4	9.91071249821234	95	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAAGCCTTGTTCAGCCA	NA	False	NA	NA	False	NA	NA	NA	50497347	50299984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_50301510_50309659_50309742_50311281_50311386_50343968_50344085_50354324_50354529_50362264_50362656_50393595_50393705_50414097_50414285_50476030_50476188_50497248
43926	chr9	-	2436	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	325	1274	325	621	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	6	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAAAGATATAAGCCCGCT	NA	False	NA	NA	False	NA	NA	NA	50570755	50547206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
43927	chr18	+	2129	5	NIC	ENSMUSG00000001383.10	novel	2310	6	NA	NA	55	585	intron_retention	FALSE	canonical	3	554	junction_4	83.184659042398	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAACCTCGTTTCTTCT	6671	False	NA	NA	False	NA	NA	NA	36926983	36931721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36927013_36927349_36927444_36928093_36929164_36929551_36929698_36930931
43928	chr11	-	1574	10	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	67	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	487.177535008834	1	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTCTGCTTACTCGGTG	NA	False	NA	NA	False	NA	NA	NA	60702024	60679724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60679952_60683781_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695084_60695235_60697771_60697869_60701729
43929	chr9	-	1225	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	-12	19	-12	-19	multi-exon	FALSE	canonical	3	1085	junction_1	10	3258	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAATTTGAAAAAATTAAT	3701	False	NA	NA	False	NA	NA	NA	96360740	96353008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96353906_96356010_96356059_96360460
43930	chr10	-	1361	11	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-4	-871	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	829.052688313596	1	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	9	True	NA	NA	False	NA	NA	NA	128401860	128394507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394702_128395094_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401674
43931	chr7	+	3033	18	Antisense	novelGene_ENSMUSG00000085228.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	168	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTTCCGGTTCCGCGG	NA	False	NA	NA	False	NA	NA	NA	143989471	144024478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_143990843_143991688_143991760_143992504_143992646_143993721_143993835_143995434_143995587_143999532_143999610_144003296_144003351_144004712_144004824_144005759_144005873_144006280_144006396_144008412_144008524_144010177_144010235_144011407_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019783_144024423
43932	chr2	+	2187	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	-186	1367	-172	715	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTCCTGTGGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	118943101	118966404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
43935	chr8	+	2643	1	Antisense	novelGene_ENSMUSG00000053693.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTAATTTTCCAAACTGA	NA	False	NA	NA	False	NA	NA	NA	85642571	85645214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85642600_85645200
43937	chr9	+	2881	14	NNC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	5	3	intron_retention	FALSE	canonical	2	11	junction_2	89.9088953744601	1	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCTCTGGCTGTATAAAT	NA	False	NA	NA	False	NA	NA	NA	107828170	107848727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107828372_107833063_107833457_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
43938	chr18	-	1745	3	NNC	ENSMUSG00000051316.9	novel	3302	2	NA	NA	-15	-1531	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	630	4	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGTTGTTCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	37777272	37775074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_37776432_37776472_37776586_37776997
43939	chr19	-	1721	7	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-42	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1257.91239096105	2	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCCATTCATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	15902336	15882498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886806_15895590_15895776_15896818_15896889_15898299_15898361_15902227
43940	chrUn_JH584304v1	+	3438	22	Intergenic	novelGene_4590	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_3	23.9731520276452	1	149	11	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAGTCTCCTACTTTTC	NA	False	NA	NA	False	NA	NA	NA	4980	52726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_5089_14083_14202_19242_19350_20226_20377_31432_31500_38114_38246_39083_39164_39432_39612_40110_40187_41049_41127_41974_42078_44213_44311_47516_47678_47923_47999_48581_48647_48768_48946_49051_49969_50092_50277_51408_51553_51661_51730_52288_52401_52484
43941	chr1	+	2656	19	ISM	ENSMUSG00000056763.17	ENSMUST00000071087.12	4355	30	15	23997	6	-3960	5prime_fragment	FALSE	canonical	2	35	junction_1	32.2430966867424	6	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTATCTTTTATATATTCA	NA	False	NA	-87	True	NA	NA	NA	10108456	10182996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174590_10178593_10178707_10182617
43942	chr8	+	2378	10	NNC	ENSMUSG00000038482.12	novel	1700	11	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	435.58747048606	1	112	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACAAGCTCTGTGTTTC	3016	False	NA	NA	False	NA	NA	NA	13389663	13428440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421079_13422465_13422618_13422935_13423057_13423855_13423924_13427141
43943	chr7	+	1725	3	NIC	ENSMUSG00000037563.16	novel	628	4	NA	NA	-14	0	intron_retention	FALSE	canonical	3	20184	junction_2	348.5	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050173	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28050277_28050416_28051836_28051918
43944	chr16	+	1445	3	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	-60	648	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24348083	24349760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_24348139_24348244_24348982_24349107
43945	chrX	+	1120	9	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	49	1179	-14	-1141	5prime_fragment	FALSE	canonical	3	4366	junction_7	274.128049458643	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGGTATTTGAATGGGAA	NA	False	NA	NA	False	NA	NA	NA	105230754	105246126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044
43946	chr17	-	2454	13	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	76	-576	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	265.349599061733	1	84	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTAAGAACCATGTAAC	NA	False	NA	NA	False	NA	NA	NA	7050107	7006015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009826_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
43948	chrX	+	1734	4	NNC	ENSMUSG00000006373.11	novel	1857	3	NA	NA	74	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	236.31805310264	19	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGAGGCTTTCATTTTTT	1742	False	NA	NA	False	NA	NA	NA	35861932	35869734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_35862268_35865773_35865930_35868440_35869125_35869175
43949	chr5	+	2110	10	NIC	ENSMUSG00000029199.12	novel	1668	11	NA	NA	15	-21	intron_retention	FALSE	canonical	3	315	junction_9	34.5289286480228	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTAAAAAGATTTATTTT	6969	False	NA	NA	False	NA	NA	NA	65548922	65566529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
43951	chr4	-	2198	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	26	-1438	26	1438	multi-exon	FALSE	canonical	3	160	junction_2	5.5	705	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCCCAGAAAGACAAACATG	NA	False	NA	NA	False	NA	NA	NA	34778397	34767225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_34769148_34771257_34771415_34778278
43954	chr2	+	1962	10	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-4150	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_5	64.6914805389472	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGTTGTTTTATTCA	NA	False	NA	NA	False	NA	NA	NA	180374060	180384070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
43956	chr2	+	1602	5	NNC	ENSMUSG00000027405.17	novel	946	5	NA	NA	-19	1	intron_retention	FALSE	canonical	0	0	junction_4	976.668924201031	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130118565	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130119545_130119768_130119891_130120075_130120211_130120816_130121007_130121052
43957	chr11	+	3412	4	FSM	ENSMUSG00000052563.14	ENSMUST00000064493.6	3426	4	13	1	13	-1	multi-exon	FALSE	canonical	3	9	junction_2	4.64279609239471	41	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTCGTTCCTGACTAC	NA	False	NA	NA	False	NA	NA	NA	51541795	51548506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51542041_51544560_51544699_51544818_51544941_51545599
43958	chr12	+	1315	10	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-6	-409	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	928.032805933545	12	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTGGACAATGCTGATAAA	NA	False	NA	NA	False	NA	NA	NA	17316589	17334362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328844_17330911_17331071_17333200_17333298_17333938
43959	chr11	-	2524	9	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-201	80	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	74.0688024744561	246	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTCTGACTGAGTAGC	NA	False	NA	NA	False	NA	NA	NA	52173599	52143117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_52144813_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538
43960	chr10	+	1763	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4399.30714241838	4	92	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTATGTCTGTTTATGTT	NA	False	NA	NA	False	NA	NA	NA	127919174	127926140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921086_127921310_127921496_127921910_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
43961	chr7	-	2916	7	NIC	ENSMUSG00000030750.14	novel	1120	8	NA	NA	-44	-18	intron_retention	FALSE	canonical	3	553	junction_6	191.750199188655	23	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCTCTGTAATCCAGG	NA	False	NA	NA	False	NA	NA	NA	125090615	125066829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125067016_125067450_125067572_125068200_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
43962	chr16	+	2945	18	FSM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	128	0	-56	0	multi-exon	FALSE	canonical	3	41	junction_1	94.325542449951	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	NA	NA	NA	16688772	16710854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
43963	chr18	+	3894	2	NIC	ENSMUSG00000024561.12	novel	3920	12	NA	NA	20	-600	intron_retention	FALSE	canonical	3	76	junction_1	0	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTAACAACCGTCCACTG	NA	False	NA	NA	False	NA	NA	NA	74409724	74413705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_74410501_74410587
43964	chr8	-	3138	4	NNC	ENSMUSG00000055707.14	novel	2991	3	NA	NA	-16	1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	22.4251842554055	52	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAGCAGACCTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	70929571	70902916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70905670_70908115_70908299_70928456_70928587_70929499
43965	chr12	+	1326	9	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	-11	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	989.562900666249	27	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	NA	False	NA	NA	NA	87313460	87320754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319408_87319475_87319896_87319999_87320220_87320273_87320364
43966	chr2	-	1558	13	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	13	110	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	168.62802175861	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGTCCATAAAATGAT	NA	False	NA	NA	False	NA	NA	NA	48839230	48795217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48827463_48827541_48830344_48830413_48839105
43968	chr7	-	1956	6	NNC	ENSMUSG00000030614.9	novel	2259	5	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.229244786277	633	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAATGCATGGAGGTCC	6027	False	NA	NA	False	NA	NA	NA	90125202	90116648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_90117348_90117640_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
43969	chr5	+	2043	14	ISM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	55	0	-12	0	intron_retention	FALSE	canonical	3	351	junction_8	24.9475188791361	1161	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	NA	False	NA	NA	NA	31350625	31356244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579
43970	chr6	-	1848	7	ISM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	41	465	15	-62	5prime_fragment	FALSE	canonical	3	1332	junction_6	190.502333027417	1	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGTCTATATATATTGACA	NA	False	NA	NA	False	NA	NA	NA	124942460	124935840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
43972	chr1	+	5077	19	NIC	ENSMUSG00000033257.15	novel	10019	20	NA	NA	11	-9	intron_retention	FALSE	canonical	3	108	junction_14	13.9013277632119	5	134	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTACACTGAGAGCCATGT	NA	False	NA	NA	False	NA	NA	NA	74700919	74737127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74701049_74712002_74712170_74718056_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
43973	chr14	+	2425	14	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	33	-271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	291.402606868814	2	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTATCACTCCCTGC	NA	False	NA	NA	False	NA	NA	NA	122344482	122396745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378695_122384104_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
43974	chr11	+	2900	6	NIC	ENSMUSG00000020873.16	novel	1523	9	NA	NA	0	-112	intron_retention	FALSE	canonical	3	274	junction_2	8.56504524214554	6	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATCAAAGGAAGCAAGA	NA	False	NA	NA	False	NA	NA	NA	95275731	95282490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_95275940_95276626_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
43975	chr19	-	2521	25	NNC	ENSMUSG00000025159.9	novel	3412	30	NA	NA	-1665	1035	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	55.6551884373775	1	104	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTTTACCAGAGCTGCC	9871	False	NA	NA	False	NA	NA	NA	41954731	41934195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951510_41951839_41951910_41952301_41952377_41952756_41952843_41954652
43976	chr1	+	364	2	Genic_Genomic	ENSMUSG00000081051.5	novel	531	1	NA	NA	-35	62	multi-exon	FALSE	non_canonical	0	0	junction_1	0	678	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGGAACCAAGACATTAG	NA	False	NA	NA	False	NA	NA	NA	95426310	95426938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_95426511_95426774
43977	chr8	+	1442	3	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCTCTAGTGAAATGAG	NA	False	NA	NA	False	NA	NA	NA	43748286	43757589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43749573_43753663_43753745_43757514
43978	chr4	+	3139	11	FSM	ENSMUSG00000037366.15	ENSMUST00000105869.9	2248	11	22	-913	22	-8	multi-exon	FALSE	canonical	3	35	junction_4	4.79687398208458	121	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGAAGTCGCTGGCTGGC	1801	False	NA	NA	False	NA	NA	NA	134123652	134154716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_134123736_134130280_134130416_134131403_134131555_134132316_134132414_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
43979	chr2	-	2667	6	NIC	ENSMUSG00000027404.17	novel	1161	7	NA	NA	-11	-9	intron_retention	FALSE	canonical	3	3295	junction_4	279.281506727531	8	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTGATATATTCATTT	NA	False	NA	NA	False	NA	NA	NA	130021265	130013563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130019087_130021153
43980	chr9	+	1351	7	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-60	-364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	713.725826599791	4	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTCATTTTTAAAATTC	NA	False	NA	NA	False	NA	NA	NA	108183577	108214769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213843_108213999_108214233
43982	chr10	-	1450	8	NIC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	-1353	110	intron_retention	FALSE	canonical	3	1924	junction_2	89.3993562502504	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTAGCTGAGATTTCT	NA	False	NA	NA	False	NA	NA	NA	127356002	127353491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355581_127355839
43983	chr15	+	1453	4	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	281	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	635.924698547102	68	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATGAAGTTGCATTACAC	NA	False	NA	NA	False	NA	NA	NA	100513510	100518618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100515883_100517456
43984	chr11	-	651	4	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	50	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	550.14361761271	47	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTAAAATGTCCACTGAAT	8243	False	NA	NA	False	NA	NA	NA	102907944	102884884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885056_102890469_102890674_102890975_102891183_102907875
43986	chr5	-	2233	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	2	3	intron_retention	FALSE	canonical	2	6	junction_5	120.105225973404	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTTGTTTTCTCAT	5316	False	NA	NA	False	NA	NA	NA	143314964	143302248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311087_143311979_143314145_143314326_143314853
43987	chr2	-	1382	7	FSM	ENSMUSG00000027327.17	ENSMUST00000184535.8	1358	7	-10	-14	-2	14	multi-exon	FALSE	canonical	2	7	junction_4	320.450724241133	2321	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGGGGTTTTTTGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	131001964	130988229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130991360_130991463_130993537_130993681_130995513_130995631_131001872
43989	chr8	-	2383	1	NIC	ENSMUSG00000015341.18	novel	1792	6	NA	NA	1450	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	NA	False	NA	NA	NA	23733744	23731361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23731400_23733700
43990	chr16	-	1160	4	NNC	ENSMUSG00000040681.17	novel	261	5	NA	NA	-4	641	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3210.85391895815	14	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTATTTGGAAATGCCTGA	NA	False	NA	NA	False	NA	NA	NA	95928933	95922792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928772
43992	chr1	+	808	1	Intergenic	novelGene_487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGTGAGAAACATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179290546	179291354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_179290500_179291400
43993	chr8	-	3219	15	FSM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	16	1	0	-1	multi-exon	FALSE	canonical	1	17	junction_9	12.1866856085832	74	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGGTGTGTAAAGCCCA	1080	False	NA	NA	False	NA	NA	NA	120331945	120324714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329569_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
43996	chr1	+	2025	4	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	-320	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	586.2189579557	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGGGCAAGAGAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	180721702	180726652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180721947_180722160_180722407_180725014_180725155_180725257
43997	chr7	-	1854	9	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-44	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927.924262803813	1	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8821	False	NA	NA	False	NA	NA	NA	141941638	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930467_141930559_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937207_141939255_141939356_141941473
43999	chr12	-	912	8	Intergenic	novelGene_4358	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	70	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAATTCTGTAACAGAAAT	1136	False	NA	NA	False	NA	NA	NA	55465232	55434238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_55434246_55445689_55445775_55454251_55454349_55454786_55454867_55456909_55457068_55458971_55459151_55461188_55461282_55465019
44000	chr7	-	1343	8	NIC	ENSMUSG00000061479.16	novel	1365	7	NA	NA	26	-1	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	997.468939724083	2897	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTGTCTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	26895552	26886432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26893506_26893630_26894868_26894982_26895415
44001	chr17	+	1626	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	-36	6	-36	-6	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	98	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTGAAACAAATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	17594797	17608010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
44002	chr13	+	2605	12	NIC	ENSMUSG00000062822.9	novel	2795	13	NA	NA	18	-6	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	49.5034851431928	6	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGAACTATTTCATTT	NA	False	NA	NA	False	NA	NA	NA	119599337	119622647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610731_119611368_119611461_119612472_119612543_119614219_119614391_119617470_119617567_119620988_119621030_119622262
44004	chr8	+	1403	1	NIC	ENSMUSG00000110505.2	novel	753	4	NA	NA	55	-9904	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTGGCAATCCTTTAAT	3567	False	NA	NA	False	NA	NA	NA	123957592	123958995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123957600_123959000
44006	chr5	+	2052	2	Intergenic	novelGene_891	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	36	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCATTGGAAATGTAATT	NA	False	NA	NA	False	NA	NA	NA	145196984	145199094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_145198981_145199038
44008	chr9	+	2038	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	74	0	11	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	NA	False	NA	NA	NA	55116282	55131717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
44009	chr10	-	2759	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	54	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	841.395553535108	1	150	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCAAATACTCAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	86541319	86526713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527607_86527999_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
44010	chr6	-	3659	1	Antisense	novelGene_ENSMUSG00000107310.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	163	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCGCTACTTCCGGCGCG	NA	False	NA	NA	False	NA	NA	NA	36937315	36933656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_36933700_36937300
44011	chr16	+	3104	4	ISM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	-29	14347	-15	-189	5prime_fragment	FALSE	canonical	0	0	junction_1	225.875088390809	2	102	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAATTAGTTGATAAAGA	NA	False	NA	NA	False	NA	NA	NA	17577511	17596881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265
44012	chr11	-	2783	22	FSM	ENSMUSG00000017288.16	ENSMUST00000056601.11	2833	22	51	-1	-9	1	multi-exon	FALSE	canonical	3	37	junction_11	13.2142642642469	151	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATCCCTGAAGCTGGG	NA	False	NA	NA	False	NA	NA	NA	76070422	75937050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76029133_76029221_76054623_76054691_76057024_76057075_76065452_76065534_76070238
44013	chr19	+	2747	11	Antisense	novelGene_ENSMUSG00000118513.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGTCCCCTGGAGGATAA	NA	False	NA	NA	False	NA	NA	NA	33532567	33567621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_33533880_33534506_33534576_33535661_33535737_33536911_33537056_33556761_33556899_33557864_33557975_33559452_33559652_33560446_33560563_33562264_33562374_33565598_33565744_33567290
44014	chr8	+	1166	8	ISM	ENSMUSG00000004637.16	ENSMUST00000160862.8	1715	9	-33	6428	7	5927	5prime_fragment	FALSE	canonical	3	58	junction_7	25.2303671905787	180	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTGCGGCTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	115166401	115438991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726
44015	chr15	+	1415	14	NNC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-8	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	168.031977796282	5	20	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTTTTTCTTTGTGA	2219	False	NA	NA	False	NA	NA	NA	102379183	102407319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391674_102392618_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
44016	chr15	+	1244	8	Antisense	novelGene_ENSMUSG00000022234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCGCACCTCCCTCTCGC	NA	False	NA	NA	False	NA	NA	NA	31591145	31601913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_31591153_31593019_31593201_31593662_31593783_31594244_31594393_31594479_31594672_31595789_31595989_31597554_31597735_31601696
44017	chr2	-	1397	6	NIC	ENSMUSG00000027566.16	novel	914	7	NA	NA	2	-18	intron_retention	FALSE	canonical	3	3926	junction_1	615.404127382974	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTACATTTTTTAACT	NA	False	NA	NA	False	NA	NA	NA	179684224	179678184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179681273_179684070
44023	chr17	+	2061	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	3	3340	3	2	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	393	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCAGCTGGGCTTCGG	NA	False	NA	NA	False	NA	NA	NA	29833766	29860625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
44024	chr7	-	1850	7	NIC	ENSMUSG00000008140.19	novel	1662	8	NA	NA	8	-18	intron_retention	FALSE	canonical	3	278	junction_1	282.765509447905	475	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCACTCTTCAGCTCACT	NA	False	NA	NA	False	NA	NA	NA	44145844	44139552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
44025	chr10	-	1250	5	FSM	ENSMUSG00000004667.19	ENSMUST00000131743.8	1238	5	-14	2	-14	-2	multi-exon	FALSE	canonical	3	2815	junction_1	73.6562964043129	434	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTGTGGTGCAATCCTA	5646	False	NA	NA	False	NA	NA	NA	79875498	79871786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_79872136_79872360_79872808_79873021_79873219_79874272_79874448_79875416
44026	chr8	-	1984	10	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38751	-1	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_8	71.0164300238567	134	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	43633274	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43597362_43597564_43618053_43618097_43633233
44029	chr11	-	2146	17	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	17	-454	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	257.284011357099	1	90	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGGTAAGAGGTTTGTAC	NA	False	NA	NA	False	NA	NA	NA	106146888	106141178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143079_106143287_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146502_106146586
44030	chr11	+	880	1	FSM	ENSMUSG00000080776.2	ENSMUST00000119853.2	813	1	-26	-41	-26	41	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTCACAGCTTGGCAAAT	NA	False	NA	NA	False	NA	NA	NA	46618618	46619498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_46618600_46619500
44032	chr13	-	1439	1	FSM	ENSMUSG00000007836.7	ENSMUST00000007980.7	2678	1	1239	0	1239	0	mono-exon	FALSE	NA	NA	NA	NA	NA	768	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGATTGAGTGAGAGTATG	570	False	NA	NA	False	NA	NA	NA	58275131	58273692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_58273700_58275100
44033	chr9	+	3450	15	NNC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	38	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	15.0983172464175	57	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGGTGTAGAAGTT	1674	False	NA	NA	False	NA	NA	NA	59587464	59626155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619430_59621078_59621224_59621459_59621557_59623205_59623311_59623490_59625225_59625281_59625422_59625505_59625744_59625803
44034	chr11	-	2032	15	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	208	-135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	332.867289851468	1	61	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTGGGGATAAAACCCG	NA	False	NA	NA	False	NA	NA	NA	35725080	35699342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717308_35717405_35718184_35718294_35719451_35719641_35723998_35724129_35724942
44036	chr1	+	3195	1	ISM	ENSMUSG00000067336.7	ENSMUST00000087435.7	12899	13	110940	1480	22863	-1480	mono-exon	FALSE	NA	NA	NA	NA	NA	28	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGCAGTTCTTTAGGTG	-11	True	NA	NA	False	NA	NA	NA	59913498	59916693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_59913500_59916700
44038	chr4	-	2268	5	NIC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-6	135	intron_retention	FALSE	canonical	1	3	junction_4	49.8967684324346	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATTTCACGCCTTTA	NA	False	NA	NA	False	NA	NA	NA	129512879	129509416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512666
44039	chr1	-	1296	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	4	-6	4	6	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	41	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTGTCATGTTTTAAAGT	NA	False	NA	NA	False	NA	NA	NA	161078752	161068578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
44041	chr6	-	4796	7	ISM	ENSMUSG00000025608.10	ENSMUST00000026698.8	5379	8	35117	8	-4553	-8	3prime_fragment	FALSE	canonical	3	33	junction_2	8.24115687671741	45	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTGGTTCAGGCCCTAG	NA	False	NA	NA	False	NA	NA	NA	31505799	31496430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_31500155_31501239_31501408_31501604_31501667_31501873_31502028_31503136_31503209_31503481_31503691_31505392
44042	chr9	-	2115	11	FSM	ENSMUSG00000062762.18	ENSMUST00000238932.2	2220	11	109	-4	-11	4	multi-exon	TRUE	canonical	3	488	junction_2	34.4551882885582	350	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTATAATGTTTGATTTC	NA	False	NA	NA	False	NA	NA	NA	36708580	36690450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708508
44043	chr5	+	3411	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	358	23	-8	-23	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	1	174	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGCAAATTAAAGACCTC	NA	False	NA	NA	False	NA	NA	NA	149121517	149152215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
44044	chr9	+	2037	14	FSM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	46	910	46	-910	multi-exon	FALSE	canonical	3	518	junction_4	138.528744373691	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCCTATTCCTATATCAA	5558	False	NA	NA	False	NA	NA	NA	35122496	35127400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
44045	chr15	-	1077	7	NNC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	414.390616850012	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81844982	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840544_81840640_81841993_81842112_81844915
44046	chr15	-	1576	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	222	5	222	-5	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	1	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGTTGTCTTGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	98851362	98847722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
44047	chr10	+	2109	7	NIC	ENSMUSG00000009293.18	novel	2031	6	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	140.939407784575	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCACAGTGTTGTGTGG	132	False	NA	NA	False	NA	NA	NA	77458150	77481821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_77458251_77466559_77466596_77466682_77466729_77470493_77470620_77477293_77477413_77479302_77479444_77480280
44048	chr4	+	2045	1	Genic_Genomic	ENSMUSG00000043333.13	novel	NA	NA	NA	NA	876	1336	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCATATTTCCAGTTCCAA	NA	False	NA	NA	False	NA	NA	NA	123704582	123706627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_123704600_123706600
44050	chrX	+	999	8	ISM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	51	3400	-12	-3362	5prime_fragment	FALSE	canonical	3	4366	junction_7	268.388007274877	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTACTGTGGCCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	105230756	105243905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762
44051	chr9	+	1284	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	19	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6010.40116571594	2	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080693	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084690_64085002_64085087_64085178_64085300_64085504
44052	chr7	-	1451	9	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	1	207	combination_of_known_splicesites	FALSE	canonical	3	15	junction_4	396.88718485232	73	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAATTTTTCTCTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	46569716	46539126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
44054	chr3	+	1583	4	ISM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	223	269	-4	-269	internal_fragment	FALSE	canonical	3	741	junction_3	47.3380279362046	21	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATCAGAAAAGAGCCAC	NA	False	NA	NA	False	NA	NA	NA	102965905	102971446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_102966349_102967516_102967696_102969689_102969850_102970645
44055	chr12	+	1367	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	1	1137	1	0	multi-exon	FALSE	non_canonical	0	0	junction_6	110.46488037344	1180	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	73170491	73319625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
44057	chr4	+	1935	12	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	-5	146	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	631.393277660113	1	72	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATGGTCCCTGTAATTG	850	False	NA	NA	False	NA	NA	NA	129083689	129112602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103576_129107674_129107878_129108465_129108549_129109018_129109213_129110470_129110613_129112223
44058	chr19	+	3821	5	NIC	ENSMUSG00000025068.9	novel	1182	6	NA	NA	-108	-3	intron_retention	FALSE	canonical	3	277	junction_3	33.5959446957516	8	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTGAGTCCAAACCACC	8360	False	NA	NA	False	NA	NA	NA	47843300	47853225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_47843562_47843653_47846521_47847870_47847970_47851817_47851922_47852735
44060	chr16	+	3461	4	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	754	intron_retention	FALSE	non_canonical	0	0	junction_2	652.177889842948	11	69	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAACCAAGCTCATTTGG	NA	False	NA	NA	False	NA	NA	NA	34842799	34923155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_34843006_34846194_34846313_34895957_34896065_34920125
44061	chr19	-	1672	2	Genic_Genomic	ENSMUSG00000095690.3	novel	654	1	NA	NA	-84	982	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATCCCACTCTGCTGCCT	6520	False	NA	NA	False	NA	NA	NA	7376526	7374806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_7376269_7376316
44064	chr7	+	1323	10	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	23	168	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	151.630480013538	2	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTCTGGCTTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	139717499	139730528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139717687_139720121_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
44065	chr3	-	1517	8	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	-25	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_5	243.662948872128	10	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCTTCCTGTAACAAAGC	NA	False	NA	NA	False	NA	NA	NA	10416374	10405039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411235_10412224_10412265_10413569_10413613_10416301
44066	chr11	+	1686	12	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	286	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	344.996466624618	1	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	98573702	98586804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578621_98581406_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
44067	chr12	-	1467	6	NNC	ENSMUSG00000076432.14	novel	2197	6	NA	NA	53	-361	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1348.972735084	2	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCACTTACACCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	21467536	21440693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466804_21467133_21467504
44068	chr2	-	4245	2	NIC	ENSMUSG00000047030.16	novel	4012	3	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	52	junction_1	0	1	207	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGATTTAAAAAAAAAAAATA	4621	False	NA	NA	False	NA	NA	NA	167334768	167323358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_167327514_167334678
44069	chr7	-	2557	10	ISM	ENSMUSG00000030970.17	ENSMUST00000033269.15	2321	11	41512	-468	29936	410	3prime_fragment	FALSE	canonical	3	550	junction_8	134.684817258665	1	118	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTAAACTGTCCCAAAC	NA	False	NA	NA	False	NA	NA	NA	132683584	132588881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485
44070	chr6	+	1688	10	NNC	ENSMUSG00000030225.12	novel	1729	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	195.182535648613	9	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTATTTTGTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	137731555	137814891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813771_137813810_137813882_137814113
44072	chr12	+	2542	1	FSM	ENSMUSG00000059970.8	ENSMUST00000219555.2	2526	1	-12	-4	-12	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTCTGGCGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	76451170	76453712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_76451200_76453700
44073	chr13	-	2814	12	NNC	ENSMUSG00000032745.19	novel	3299	12	NA	NA	508	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	447.66241339165	1	145	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGCTTCTGTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	111626054	111562696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585462_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626001
44074	chr13	-	1360	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-10	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	7	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314459	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311829_34312299_34312515_34312854_34312966_34313228_34313338_34314159
44075	chr14	+	3081	3	FSM	ENSMUSG00000037536.15	ENSMUST00000168833.9	2993	3	-93	5	-35	-1	multi-exon	FALSE	canonical	3	71	junction_1	10.5	85	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATGAGGTCTGGTCTTA	NA	False	NA	NA	False	NA	NA	NA	47709982	47769410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47710175_47763661_47763772_47766631
44076	chr19	-	1373	4	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	intron_retention	FALSE	canonical	3	2570	junction_2	525.399530516222	513	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	NA	NA	NA	4092237	4090286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4090540_4090707_4091086_4091397_4091486_4091583
44077	chr10	-	1228	7	NNC	ENSMUSG00000061904.13	novel	1483	7	NA	NA	247	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1541.11107105664	2	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959570	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955557_90957796_90957906_90959419
44078	chr15	-	1191	8	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	-12	-2238	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	53.0733031778133	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATAGTTTCTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	100567420	100549255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100549321_100549361_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
44079	chr10	-	2044	11	NNC	ENSMUSG00000020166.16	novel	2618	14	NA	NA	37	68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	214.024414495169	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAGGTGTGCATGGATGC	NA	False	NA	NA	False	NA	NA	NA	116385031	116321345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116322192_116328196_116328342_116329597_116329654_116333996_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343063_116384937
44080	chr17	+	1080	8	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1256.14824290896	258	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135328	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139692_13143223
44081	chr17	-	1427	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	-39	0	-39	0	multi-exon	FALSE	canonical	3	296	junction_2	292	1309	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	NA	False	NA	NA	NA	71160580	71151205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71152268_71153166_71153394_71160442
44082	chr7	+	1954	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	776	34	-282	-34	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	207	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTGACCATGGCCCTAGA	NA	False	NA	NA	False	NA	NA	NA	16516040	16532165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
44083	chr2	-	1381	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110802.8	1308	5	-73	0	-67	0	multi-exon	FALSE	canonical	3	109	junction_4	88.8453712919249	567	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119493375	119485926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493260
44084	chrX	-	2529	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	-40	10	-40	-10	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	85	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAGAAAAGGAAAACTTC	NA	False	NA	NA	False	NA	NA	NA	58179836	58107514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
44085	chr2	+	2538	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	1	-70	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	135.216791037624	1	123	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTTAAGGGGACTAGTT	NA	False	NA	NA	False	NA	NA	NA	130266285	130285584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283419_130283521_130283626_130283713_130283822_130284092_130284171_130284254_130284429_130285140_130285320_130285433
44086	chr7	+	1838	15	NNC	ENSMUSG00000002205.17	novel	735	4	NA	NA	-1215	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	40.9663874165051	563	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	44400323	44426939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44400432_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
44087	chr18	+	2366	10	NNC	ENSMUSG00000038773.12	novel	6363	24	NA	NA	1720	331	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	111.530541684308	1	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATCTCTTTGGAGTAGAC	5936	False	NA	NA	False	NA	NA	NA	34960608	34972044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642_34970765_34970816
44088	chr10	-	2440	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-26	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	600.338127865118	1	143	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	8719	False	NA	NA	False	NA	NA	NA	128401829	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399552_128401604
44089	chr17	+	2171	6	NNC	ENSMUSG00000017831.9	novel	2366	6	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	370.3029030402	501	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTTTCTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	53786246	53814708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_53786440_53790861_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
44090	chr1	+	2884	11	NNC	ENSMUSG00000026349.15	novel	4511	10	NA	NA	85	-2043	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	215.881472109118	1	171	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTTTTGTGTATTTAT	NA	False	NA	NA	False	NA	NA	NA	127701985	127731626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_127702121_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723059_127725267_127725457_127725577_127725934_127727126_127727291_127729342_127729414_127729898_127731031_127731128
44091	chr14	+	2617	13	NNC	ENSMUSG00000022019.17	novel	2657	14	NA	NA	13	1800	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	28.009918878061	5	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATACTAATGGAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	87654087	87754002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080_87749207_87753656
44094	chr17	+	1203	9	FSM	ENSMUSG00000024158.18	ENSMUST00000024974.16	1101	9	-101	-1	-10	1	multi-exon	FALSE	canonical	0	0	junction_1	126.378152779664	401	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTTATGGACTCTTTA	NA	False	NA	NA	False	NA	NA	NA	25069539	25083425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25069730_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
44095	chr1	-	2650	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	44	3	44	-3	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	356	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGTTAGTCCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	121255709	121232084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
44096	chr4	+	1165	6	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000078497.10	novel	454	2	NA	NA	-78	-448	multi-exon	TRUE	non_canonical	0	0	junction_5	208.368519695275	2680	28	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTCATACAGGAGAGAAAC	NA	False	NA	NA	False	NA	NA	NA	147209634	147597429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147469676_147469759_147472778_147472906_147474656_147475284_147597344
44097	chr7	+	2211	11	FSM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	9	4657	9	-4657	multi-exon	FALSE	canonical	3	33	junction_5	6.39140047250992	17	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCCCAGGGAATTCTCAT	2731	False	NA	NA	False	NA	NA	NA	78922955	79010599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78923088_78944255_78944356_78946755_78946956_78973216_78973393_78975181_78975350_78998007_78998192_79000498_79000592_79003737_79003849_79005549_79005620_79007812_79007898_79009707
44099	chr10	-	2158	10	NNC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-9172	-9	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_9	75.7375259663674	1	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTTTCTAAAAGCCTGT	2340	False	NA	NA	False	NA	NA	NA	41631806	41594850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41631694
44103	chr1	+	2766	8	FSM	ENSMUSG00000026240.13	ENSMUST00000121534.8	5383	8	56	2561	22	-164	multi-exon	FALSE	canonical	3	5	junction_1	127.599500990643	299	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCTGCATTCCATATCC	6063	False	NA	NA	False	NA	NA	NA	86510681	86534536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86510819_86514737_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
44104	chr6	-	3015	13	NNC	ENSMUSG00000030082.15	novel	3172	12	NA	NA	2	-42	intron_retention	FALSE	non_canonical	0	0	junction_1	371.124529863854	1	165	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCAACTTTTTACAAGC	9174	False	NA	NA	False	NA	NA	NA	88495808	88480602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88482014_88482052_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492322_88492405_88492485_88492552_88495352_88495421_88495667
44105	chr15	-	1616	14	NNC	ENSMUSG00000036678.9	novel	1811	16	NA	NA	-25	0	intron_retention	TRUE	non_canonical	0	0	junction_10	138.687721243334	1	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	NA	False	NA	NA	NA	102259155	102246690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102255118_102255205_102255470_102255527_102258387_102258516_102258930
44106	chr19	+	2260	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	1	-4	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	23.4795655837156	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACGACGGATTCCTGGA	4270	False	NA	NA	False	NA	NA	NA	5074099	5081988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
44107	chr7	-	1504	1	NIC	ENSMUSG00000030726.17	novel	3069	12	NA	NA	16	-20428	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTGATCAGTCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	99770646	99769142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99769100_99770600
44109	chr7	-	3079	6	ISM	ENSMUSG00000030726.17	ENSMUST00000208670.2	1716	13	1745	13633	1357	-735	internal_fragment	FALSE	canonical	3	561	junction_1	39.2754376169127	11	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAAAAGTTGCTGCGAAT	NA	False	NA	NA	False	NA	NA	NA	99768928	99746250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880
44110	chr5	-	2972	1	Intergenic	novelGene_802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	465	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATAAAATTTCAA	NA	False	NA	NA	False	NA	NA	NA	109914783	109911811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_109911800_109914800
44111	chr13	-	2206	1	Genic_Genomic	ENSMUSG00000021520.5	novel	NA	NA	NA	NA	-16	20	mono-exon	FALSE	NA	NA	NA	NA	NA	40	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAACGCCTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	67050866	67048660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_67048700_67050900
44112	chr8	+	1955	16	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	62	-66	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	498.586330427228	1	62	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	107621282	107649653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107621384_107624740_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632890_107633015_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642793_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
44113	chr1	-	3389	2	ISM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	141271	-7	3799	3	3prime_fragment	FALSE	canonical	3	243	junction_1	0	1	165	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTGTCTTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	77350445	77343818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_77346309_77349546
44114	chr9	-	1023	2	Antisense	novelGene_ENSMUSG00000032012.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGGGATCCTAGATCCT	NA	False	NA	NA	False	NA	NA	NA	43718750	43717616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_43717782_43717892
44115	chr4	-	2925	13	Antisense	novelGene_ENSMUSG00000073792.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	143	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGGGAGAAAAACAGGAAGA	4388	False	NA	NA	False	NA	NA	NA	99651649	99607266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_99607463_99615094_99615185_99626359_99626424_99627456_99627523_99629753_99629852_99630589_99630656_99631989_99632172_99632719_99632854_99634561_99634653_99636936_99637034_99641024_99641123_99641227_99641427_99650105
44116	chr3	-	3647	2	FSM	ENSMUSG00000027805.17	ENSMUST00000120289.3	905	2	9	-2751	9	-5	multi-exon	FALSE	canonical	3	36	junction_1	0	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCAAATACTCCATTGGA	NA	False	NA	NA	False	NA	NA	NA	57754961	57749330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_57752788_57754771
44117	chr15	-	4007	4	FSM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	29	0	2	0	multi-exon	FALSE	canonical	3	11	junction_3	4.24264068711928	29	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTCTGTAGTGATGGT	NA	False	NA	NA	False	NA	NA	NA	76755606	76735808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76738815_76754006_76754121_76754481_76754615_76754852
44118	chr1	+	2829	1	FSM	ENSMUSG00000046994.10	ENSMUST00000061334.10	11294	1	42	8423	42	-8423	mono-exon	FALSE	NA	NA	NA	NA	NA	197	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTCTTTACAGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	55276377	55279206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55276400_55279200
44119	chr13	-	2095	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	8	-81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.897430087446	1	80	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTTTCAATTTCATTGAG	6816	False	NA	NA	False	NA	NA	NA	62860559	62847300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62848420_62848496_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62860451
44120	chr5	-	1778	17	FSM	ENSMUSG00000025533.16	ENSMUST00000161094.8	1824	17	36	10	0	-10	multi-exon	FALSE	canonical	1	102	junction_3	46.3975686324187	562	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAAGGAATGATGGAGAG	NA	False	NA	NA	False	NA	NA	NA	130053186	130040108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053134
44121	chr14	+	1325	6	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3028.98785735433	23	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTGCTTGACATTGGC	NA	False	NA	NA	False	NA	NA	NA	63359964	63380571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373144_63379251_63379312_63379680
44123	chr9	+	1844	11	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	-28	-455	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	596.812198266758	6	69	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	25163915	25219405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199584_25204955_25205099_25207690_25207891_25212700_25212834_25215012_25215149_25217421_25217562_25218808
44124	chr3	-	1506	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	-18	559	-18	-559	multi-exon	FALSE	canonical	3	875	junction_11	59.2580851965116	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATGCATCACCCTCGTG	NA	False	NA	NA	False	NA	NA	NA	153650287	153628552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
44125	chrX	+	351	3	NNC	ENSMUSG00000031231.5	novel	526	2	NA	NA	94	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4713.5	51	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGGCTTTGTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	105059415	105065564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105059443_105063198_105063310_105065351
44126	chr17	-	2015	9	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	10	0	intron_retention	FALSE	canonical	3	306	junction_7	18.9270804668866	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	24382694	24374806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382307_24382555
44128	chr2	+	3896	5	FSM	ENSMUSG00000034216.13	ENSMUST00000037280.5	4054	5	13	145	13	-18	multi-exon	FALSE	canonical	3	64	junction_3	7.17635004720366	37	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAATTAAATTAAATTA	6390	False	NA	NA	False	NA	NA	NA	119119235	119128789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399_119125271_119127374
44129	chr16	-	1712	1	Antisense	novelGene_ENSMUSG00000039456.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTGTTCTAGTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	93652391	93650679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_93650700_93652400
44130	chr19	+	1906	8	ISM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	-22	16	-10	-9	intron_retention	FALSE	canonical	3	1028	junction_5	39.7199379328286	3	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACGCGCGTACTGATCCT	953	False	NA	NA	False	NA	NA	NA	8713180	8717972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810
44132	chr17	+	1643	3	NIC	ENSMUSG00000024181.10	novel	1134	4	NA	NA	-1	-16	intron_retention	FALSE	canonical	3	1408	junction_2	17.5	36	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTTGCTTGGAAGTCT	NA	False	NA	NA	False	NA	NA	NA	26342516	26345571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26342824_26343529_26344539_26345244
44133	chr11	-	2110	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	-1	0	-1	0	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	1	87	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	35725334	35699207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
44134	chr12	+	1875	6	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9689	-8	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	39.1734604036968	392	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGAGCACATCTGCTCTC	665	False	NA	NA	False	NA	NA	NA	104343733	104360507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_104343932_104347004_104347092_104355322_104355972_104357714_104357989_104358900_104359052_104359991
44136	chr1	+	1838	10	NIC	ENSMUSG00000026641.14	novel	2167	10	NA	NA	-3	2	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	55.998015837865	856	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTCCTCCTTT	6747	False	NA	NA	False	NA	NA	NA	171238890	171246327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171239009_171241940_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
44137	chr11	+	1810	16	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	250.062516627787	5	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGCTGAGTTTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	120563897	120600269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569171_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
44138	chr12	-	2922	3	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	67	3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	83.5	29	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACAGCACTCTATGCCA	NA	False	NA	NA	False	NA	NA	NA	52053217	52044286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_52046657_52051661_52051732_52052735
44139	chr18	+	1539	7	NIC	ENSMUSG00000024560.8	novel	2620	15	NA	NA	91	-496	intron_retention	FALSE	canonical	3	205	junction_5	20.7558559340625	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAAGAAGTCCGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	74349292	74352287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_74349554_74350237_74350357_74350459_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201
44140	chr18	+	1478	6	NIC	ENSMUSG00000024560.8	novel	2620	15	NA	NA	573	0	intron_retention	FALSE	canonical	3	217	junction_4	27.7805687486776	67	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	NA	False	NA	NA	NA	74352484	74354564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
44142	chr3	-	2679	7	NIC	ENSMUSG00000028107.15	novel	3614	12	NA	NA	414	-16	intron_retention	FALSE	canonical	1	178	junction_4	135.659704981087	1	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACTTGAAGCCAAGG	4139	False	NA	NA	False	NA	NA	NA	95655430	95647303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649991_95653096_95653175_95653344_95653483_95653846
44143	chr6	-	2199	9	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	2635	533	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	176.409989442208	2	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCCAGGGTTTGATTGAG	9882	False	NA	NA	False	NA	NA	NA	125160923	125152278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157813_125158140_125160876
44145	chr7	+	2668	10	NNC	ENSMUSG00000030852.19	novel	3464	15	NA	NA	2961	-7510	intron_retention	FALSE	canonical	0	0	junction_9	93.2725992871314	4	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCATAGAATTAAAACCCCC	NA	False	NA	NA	False	NA	NA	NA	130318367	130355669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353645_130355347
44146	chr17	-	1200	4	NNC	ENSMUSG00000023988.9	novel	3854	7	NA	NA	7552	-1905	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	209.606509652942	2	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGTGTTTTGGTCCCT	9893	False	NA	NA	False	NA	NA	NA	47914865	47912160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47912824_47913316_47913420_47913562_47913877_47914745
44147	chr9	+	1096	8	NIC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	1	7	junction_2	658.025277102728	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTATGGTGAAAGGATACT	NA	False	NA	NA	False	NA	NA	NA	54858098	54865313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_54858188_54859365_54859393_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
44149	chr9	+	2418	16	ISM	ENSMUSG00000032187.17	ENSMUST00000098948.10	6376	34	51214	865	31616	-1	3prime_fragment	FALSE	non_canonical	0	0	junction_10	192.512672021581	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACTGGCTCCCTGGACT	NA	False	NA	NA	False	NA	NA	NA	21578678	21614661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597308_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
44150	chr5	-	3119	4	FSM	ENSMUSG00000000149.11	ENSMUST00000000153.9	3416	4	262	35	-12	-35	multi-exon	FALSE	canonical	3	201	junction_1	26.9938264547038	116	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAATAAATGTAACAATAA	NA	False	NA	NA	False	NA	NA	NA	140815924	140744197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_140746874_140748344_140748396_140771151_140771368_140815748
44151	chrX	+	1114	5	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5140.90018260421	4	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCAGTTTTGTTCG	NA	False	NA	NA	False	NA	NA	NA	36059306	36062450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060563_36060675_36060983_36061388_36061530_36062039
44153	chr4	-	2188	8	NNC	ENSMUSG00000029027.10	novel	2093	7	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	16.0433087329902	65	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGTCAAAATTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	154059503	154048905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154056342_154056518_154057236_154057426_154059025_154059153_154059323
44154	chr3	+	2690	5	NIC	ENSMUSG00000001418.14	novel	4219	6	NA	NA	-7	1	intron_retention	FALSE	canonical	3	949	junction_3	65.807959245064	2	101	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGGCTGCCCTAAGGGG	4020	False	NA	NA	False	NA	NA	NA	88232354	88235889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88232509_88232983_88233239_88233421_88233620_88233717_88235421_88235509
44155	chr12	-	1668	11	NIC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	-19	-6	combination_of_known_junctions	FALSE	canonical	3	9	junction_9	325.254377372542	9	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGTATATGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	36206804	36141839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36184889_36184955_36206666
44156	chr11	-	2389	9	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-4	4296	intron_retention	FALSE	canonical	3	477	junction_8	67.9811554770879	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCTCCCAGCAGTGTCA	NA	False	NA	NA	False	NA	NA	NA	95896770	95859673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
44157	chr4	+	3235	9	NNC	ENSMUSG00000028414.18	novel	3370	9	NA	NA	0	-104	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	14.972892172189	1	102	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCCAAATAACAGATCAT	5834	False	NA	NA	False	NA	NA	NA	53720004	53763167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748466_53761173
44158	chr9	-	3742	5	FSM	ENSMUSG00000019066.14	ENSMUST00000115351.10	3835	5	52	41	-1	-22	multi-exon	FALSE	canonical	3	21	junction_4	8.45576726264388	46	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATGTATAATAAAATA	2285	False	NA	NA	False	NA	NA	NA	21829436	21818827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827240_21829317
44159	chr11	+	2705	3	NNC	ENSMUSG00000020346.17	novel	3151	4	NA	NA	85	-4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	42.5	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAAAAATAAGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	49141501	49153845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_49141634_49142376_49142502_49151397
44160	chr3	-	3694	11	Fusion	ENSMUSG00000086288.2_ENSMUSG00000084846.2	novel	814	2	NA	NA	-1145	19456	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	91	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGGCCCCGGCTGCGGGG	NA	False	NA	NA	False	NA	NA	NA	94913325	94882264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_94882395_94891291_94892229_94896611_94896659_94900276_94900503_94901467_94901698_94903143_94903255_94903889_94903997_94904160_94904285_94906156_94906422_94911547_94911684_94911944
44161	chr9	-	3896	25	NNC	ENSMUSG00000035941.16	novel	5650	29	NA	NA	44	-9651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	74.8412092180653	1	176	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCGTTCCTGGCTATGG	NA	False	NA	NA	False	NA	NA	NA	85631323	85579260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600531_85601061_85601149_85601915_85602003_85602796_85603400_85604327_85604503_85606099_85606278_85608666_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85625893_85631183
44162	chr1	-	3195	22	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	189	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCTCTGCAGAGACTCC	3244	False	NA	NA	False	NA	NA	NA	87647418	87604051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87604088_87609206_87609286_87609406_87609474_87611456_87611588_87619346_87619449_87623049_87623161_87625079_87625266_87625831_87625949_87626743_87626845_87627359_87627496_87628884_87628981_87629133_87629215_87630832_87630917_87633653_87633745_87635816_87635930_87637337_87637417_87638787_87638875_87639751_87639898_87640907_87641012_87642757_87643035_87645411_87646005_87647040
44163	chr6	+	2681	7	NNC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	20	-21511	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	272.612922576234	6	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGATAAGATAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	82923902	82985293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82982486_82982650_82983298_82983359_82983519
44164	chr12	+	1772	10	FSM	ENSMUSG00000036613.9	ENSMUST00000035657.9	1747	10	-25	0	-9	0	multi-exon	FALSE	canonical	2	6	junction_3	106.926188918072	469	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1125	False	NA	NA	False	NA	NA	NA	28801828	28917490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28843853_28843936_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
44166	chr5	+	2129	6	ISM	ENSMUSG00000029176.14	ENSMUST00000142035.6	739	7	-1205	1700	-1205	493	5prime_fragment	FALSE	canonical	3	336	junction_1	34.137369553028	2	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGCCTTTTTAGTAAG	3266	False	NA	NA	False	NA	NA	NA	53006279	53014808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512
44167	chr6	+	2882	5	NNC	ENSMUSG00000042097.18	novel	2812	4	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	9.98436277385793	2	49	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACCGTCCAATGTGTTCA	NA	False	NA	NA	False	NA	NA	NA	117840039	117849723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117840104_117843355_117843536_117846178_117846235_117846362_117846438_117847216
44169	chr7	+	2798	3	Antisense	novelGene_ENSMUSG00000030823.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTCCTGCCCAGGGTTGC	3461	False	NA	NA	False	NA	NA	NA	126982512	126986338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126984803_126985691_126985808_126985946
44170	chr19	+	2160	10	NIC	ENSMUSG00000003559.9	novel	1736	11	NA	NA	8	0	intron_retention	FALSE	canonical	3	159	junction_5	17.1917292776368	22	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	5982	False	NA	NA	False	NA	NA	NA	46695904	46729538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
44171	chr5	+	585	3	FSM	ENSMUSG00000061882.13	ENSMUST00000166983.3	622	3	25	12	25	-12	multi-exon	FALSE	canonical	3	8	junction_1	0	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGAGGCATGAAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	124068776	124074696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124068924_124072134_124072328_124074451
44172	chr9	+	1311	2	Genic_Genomic	ENSMUSG00000049932.4	novel	1384	1	NA	NA	1	0	multi-exon	FALSE	canonical	0	0	junction_1	0	27	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTAATGTTGAATGCT	5254	False	NA	NA	False	NA	NA	NA	44245991	44247374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_44246401_44246472
44173	chrX	+	1349	10	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	35	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1059.6258249443	9	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529171	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537064_20548383_20548449_20548616
44175	chr11	+	2075	10	FSM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	-5	-1	3	1	multi-exon	FALSE	canonical	1	2	junction_1	21.2573879677132	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGTGGCTTTTTATTTAG	NA	False	NA	NA	False	NA	NA	NA	53661315	53668150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_53661518_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
44176	chr17	-	1478	9	NIC	ENSMUSG00000024097.12	novel	1991	9	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	75	junction_6	980.170488996685	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGATGTTTTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	80514732	80508743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512050_80512511_80512690_80512868_80513276_80513458_80514603
44177	chr17	+	1063	4	NNC	ENSMUSG00000071172.14	novel	4010	4	NA	NA	0	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	847.695437970239	1	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTAACTTGAAAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	29251646	29261075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257505_29260375
44178	chr11	-	4076	12	FSM	ENSMUSG00000017314.13	ENSMUST00000100398.5	3577	12	5	-504	5	-5	multi-exon	TRUE	canonical	2	2	junction_2	3.33773813648833	36	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTCTGGCTCTGTTTGT	679	False	NA	NA	False	NA	NA	NA	101973305	101947845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076_101953209_101954013_101954242_101955119_101955270_101955394_101955548_101971478_101971598_101973154
44180	chr6	-	2653	4	FSM	ENSMUSG00000029569.10	ENSMUST00000149123.3	3337	4	66	618	-7	-618	multi-exon	FALSE	canonical	3	13	junction_3	103.721850264167	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATACAAAATGCCTTTGC	-3	True	NA	NA	False	NA	NA	NA	13608033	13581303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13607828
44181	chr9	+	2015	4	FSM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	-10	5	-10	-5	multi-exon	FALSE	canonical	3	61	junction_1	7.71722460186015	189	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTTTGTTTTAAC	4864	False	NA	NA	False	NA	NA	NA	122752126	122760088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_122752284_122754072_122754362_122755374_122755520_122758664
44182	chrX	+	1483	5	NIC	ENSMUSG00000095180.11	novel	893	6	NA	NA	11	-9	intron_retention	FALSE	canonical	3	2792	junction_1	540.640534458895	30	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATACAAATATCTTAGTGA	8516	False	NA	NA	False	NA	NA	NA	36891646	36897299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36894547_36897041
44183	chr14	-	1827	12	Antisense	novelGene_ENSMUSG00000004561.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	30	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTCTCTGCGAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	52129316	52122246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_52122481_52122607_52122978_52124349_52124435_52124677_52124760_52125427_52125501_52126195_52126292_52126601_52126673_52126982_52127090_52127316_52127388_52128133_52128186_52128565_52128655_52128819
44184	chr17	-	3349	9	FSM	ENSMUSG00000024142.16	ENSMUST00000070888.14	3358	9	11	-2	-7	0	multi-exon	FALSE	canonical	3	60	junction_8	10.0374299499424	245	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGGCCGATTGCTTTC	9598	False	NA	NA	False	NA	NA	NA	24698041	24692524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697453_24697985
44185	chr7	+	1441	13	ISM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	2537	257	2198	-257	3prime_fragment	FALSE	canonical	3	1087	junction_8	72.4033838988206	2	18	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAAATGTTCTTCTTGCA	NA	False	NA	NA	False	NA	NA	NA	120236935	120258490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
44187	chr14	+	1669	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	71	425	71	19	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAACATGATTGTGTG	1757	False	NA	NA	False	NA	NA	NA	26359299	26377988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
44188	chr18	-	1183	5	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	-1231	-242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2887.15122352467	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTCTGAAAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	35075146	35070708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072402_35074941
44190	chr6	+	869	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	72	9	19	-4	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATATAAATACATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	86986889	87005432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
44191	chr15	+	1571	4	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	284	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	635.924698547102	78	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513513	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100515936_100517407
44192	chr8	+	3853	15	Fusion	ENSMUSG00000031629.15_ENSMUSG00000110270.2	novel	3010	14	NA	NA	2419	11207	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	180	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCCAGAGATGGCGGGAA	NA	False	NA	NA	False	NA	NA	NA	47028626	47070205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_47029767_47031064_47032201_47034471_47034518_47034604_47034692_47039385_47039486_47039640_47039739_47043255_47043305_47045625_47045795_47046508_47046744_47052756_47052902_47058119_47058257_47060845_47060937_47063474_47063653_47065400_47065478_47070040
44194	chr5	-	1528	12	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	-7	164	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	702.218927036009	2	22	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGACATGCCTATAACC	NA	False	NA	NA	False	NA	NA	NA	117527094	117517517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521205_117521306_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
44195	chr9	-	1778	7	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1696.49855093759	1	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTAGTGCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	110775161	110768671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769761_110769848_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
44196	chr11	-	3063	10	FSM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	-11	10	-11	-10	multi-exon	FALSE	canonical	3	28	junction_7	3.67507453523138	48	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAATAATACCAATTGAAT	NA	False	NA	NA	False	NA	NA	NA	53782497	53755377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
44197	chrX	-	1827	4	NIC	ENSMUSG00000015668.14	novel	1497	6	NA	NA	14	-1	intron_retention	FALSE	canonical	3	545	junction_3	24.6576560118759	52	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAATAAACGTGGCTTGA	NA	False	NA	NA	False	NA	NA	NA	99669527	99666514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_99667567_99668138_99668196_99668400_99668485_99668893
44198	chr2	+	4816	5	FSM	ENSMUSG00000027381.17	ENSMUST00000103210.2	3538	5	30	-1308	30	-11	multi-exon	FALSE	canonical	3	10	junction_1	9.78199877325692	24	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGCTTTCATGAACTGTT	NA	False	NA	NA	False	NA	NA	NA	127967999	128004456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_127968173_127970539_127970677_127970844_127970935_127989004_127989115_128000150
44199	chr12	-	3162	20	FSM	ENSMUSG00000072919.5_ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	32	-670	-15	665	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	7	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGGGATCTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	87312998	87284976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
44200	chr5	-	4422	2	Intergenic	novelGene_699	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTTCTCTAGTCCAGT	NA	False	NA	NA	False	NA	NA	NA	33686120	33681645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_33681883_33681935
44201	chr1	+	2671	16	Antisense	novelGene_ENSMUSG00002076189.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTCCCTAAGGAGACTC	NA	False	NA	NA	False	NA	NA	NA	131238273	131455061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_131238437_131244866_131244973_131247262_131247398_131248181_131248250_131252824_131252891_131264107_131264215_131272086_131272282_131273496_131273601_131277188_131277417_131283250_131283378_131284427_131284646_131291741_131291805_131339538_131339700_131364411_131364606_131452675_131453346_131454995
44202	chr13	+	3875	27	NNC	ENSMUSG00000021686.7	novel	4021	27	NA	NA	31	-99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	111.795889933026	1	184	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATTCTTTGATTTTCCT	NA	False	NA	NA	False	NA	NA	NA	94495498	94702722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585025_94587460_94587594_94591916_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
44203	chr7	-	5064	11	NIC	ENSMUSG00000030630.17	novel	1585	14	NA	NA	83	-16	intron_retention	FALSE	canonical	3	98	junction_9	7.53657747256671	1	179	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGCCACAGAAATCTC	NA	False	NA	NA	False	NA	NA	NA	84255029	84234382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84250363_84251288_84251400_84254850
44207	chr11	+	2754	25	FSM	ENSMUSG00000020549.15	ENSMUST00000071891.12	2771	25	18	-1	-15	1	multi-exon	FALSE	canonical	3	56	junction_24	61.5767221304718	89	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGACAACAGTTTGTAC	NA	False	NA	NA	False	NA	NA	NA	64869881	64892896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820_64892040_64892657
44208	chr13	-	1265	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311865_34312305_34312515_34312854_34312966_34313228_34313338_34314159
44209	chr17	+	2058	3	ISM	ENSMUSG00000024014.9	ENSMUST00000024811.9	2698	6	916	5	364	-1	3prime_fragment	FALSE	canonical	3	1677	junction_1	101	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCTTTGAGTTTTCCAT	NA	False	NA	NA	False	NA	NA	NA	29710642	29715081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29711006_29712695_29712873_29713563
44210	chrX	-	3272	24	Antisense	novelGene_ENSMUSG00000080645.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCAGCCGCAGCTTCTGCGG	NA	False	NA	NA	False	NA	NA	NA	7686364	7656234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_7656306_7658306_7658375_7658511_7658581_7660502_7660521_7661225_7661337_7665526_7665666_7666393_7666579_7666772_7666818_7667410_7667448_7667541_7667595_7667730_7667827_7669559_7669637_7670595_7670732_7676129_7676226_7676489_7676703_7676844_7676959_7678518_7678597_7678701_7678798_7678918_7678973_7679060_7679167_7680800_7680937_7684264_7684387_7684532_7685559_7686238
44211	chr15	+	754	1	Intergenic	novelGene_3296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTACTACACTTTGGACT	NA	False	NA	NA	False	NA	NA	NA	58791294	58792048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_58791300_58792000
44212	chr17	+	2044	4	FSM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	-12	-4	-12	4	multi-exon	FALSE	canonical	3	9	junction_1	17.3781471969828	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATTTATGTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	56199107	56205932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56199187_56202820_56202948_56203140_56203202_56204155
44213	chr12	+	2504	11	NNC	ENSMUSG00000012076.9	novel	2609	10	NA	NA	13	0	intron_retention	FALSE	non_canonical	0	0	junction_3	59.7987458062458	1	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTAGTGTTGTGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	55883167	55916521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55883431_55888355_55888447_55891180_55891225_55891270_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55914946
44214	chr7	-	1995	9	NNC	ENSMUSG00000030605.16	novel	2125	10	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	408.647158316316	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTCTGTGCCTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	78798805	78783517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784555_78786424_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
44215	chr7	+	1825	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	144	0	-27	0	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	603	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	44397980	44426939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
44216	chr10	-	3921	28	FSM	ENSMUSG00000074657.6	ENSMUST00000217895.2	3996	28	-60	135	-45	-135	multi-exon	FALSE	canonical	3	28	junction_13	6.98675996544999	43	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCCAAATCTCATTCATA	NA	False	NA	NA	False	NA	NA	NA	127099009	127065053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127065726_127066017_127066046_127066437_127066506_127066792_127066947_127067160_127067378_127069685_127069791_127069915_127069988_127071485_127071547_127071922_127072025_127072589_127072700_127072800_127072866_127073165_127073284_127073585_127073775_127074613_127074761_127075042_127075250_127075697_127075767_127077799_127077976_127078526_127078676_127079228_127079378_127079516_127079622_127081218_127081344_127081573_127081662_127081815_127081872_127082900_127082950_127083391_127083497_127083898_127083973_127084060_127084149_127098636
44217	chr12	+	1149	9	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-15	-1689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1493.08417692205	12	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908843	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564_78931670_78931985
44218	chr4	+	2080	4	NIC	ENSMUSG00000028847.9	novel	1336	5	NA	NA	-10	-6	intron_retention	FALSE	canonical	3	373	junction_3	14.0554457615387	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAATCCTGTCCTGTTTT	7690	False	NA	NA	False	NA	NA	NA	126156182	126169670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126156331_126166470_126166569_126166767_126167866_126168934
44220	chr9	+	2812	16	NNC	ENSMUSG00000032308.10	novel	2826	16	NA	NA	41	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	16.3184966627853	50	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGCATTTCTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	57496775	57503511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57496970_57497606_57497748_57497943_57498060_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501227_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225
44221	chr16	+	2446	5	Antisense	novelGene_ENSMUSG00000022828.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATCCCAATAATGAGCGC	NA	False	NA	NA	False	NA	NA	NA	37330737	37359420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_37332180_37336078_37336325_37343114_37343314_37356081_37356556_37359335
44223	chr7	+	1421	3	ISM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	-11	50	2	42	intron_retention	FALSE	canonical	3	18474	junction_2	193.5	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGATTTCCCAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	12656246	12660561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_12656316_12656899_12657009_12659318
44225	chr5	+	2450	12	NIC	ENSMUSG00000029635.16	novel	2973	13	NA	NA	-49	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	37.5886830164225	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGTGTCAACTATATT	NA	False	NA	NA	False	NA	NA	NA	146167990	146239684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
44226	chr8	-	1688	20	NNC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	23	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	232.914724090301	1	51	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATATAGTCTTGTTGTCTG	3385	False	NA	NA	False	NA	NA	NA	105261217	105237662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_105237900_105239831_105239882_105239972_105240020_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254085_105254818_105254850_105256687_105256749_105257024_105257129_105261143
44227	chr11	-	2094	16	NNC	ENSMUSG00000090758.2	novel	357	3	NA	NA	0	15793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	605	7	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGATGGGGCGGACAGCC	NA	False	NA	NA	False	NA	NA	NA	120600273	120564178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120564627_120564863_120564922_120568336_120568452_120569245_120569343_120577465_120577526_120579352_120579426_120579734_120580166_120591967_120592108_120592304_120592387_120593307_120593375_120594426_120594490_120594895_120594954_120599486_120599534_120599753_120599823_120599890_120600071_120600167
44228	chr9	-	888	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	3	-3	3	1	multi-exon	FALSE	canonical	3	357	junction_2	52.5	2192	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCGCTGTACTTCTTGGA	7947	False	NA	NA	False	NA	NA	NA	22028465	22024283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22024976_22025103_22025240_22028405
44229	chr6	+	1591	8	NNC	ENSMUSG00000007458.15	novel	2539	8	NA	NA	-16	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	465.928478351319	2	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2927	False	NA	NA	False	NA	NA	NA	122285941	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286_122293695_122294353
44231	chr4	-	1425	1	Antisense	novelGene_ENSMUSG00000028423.16_AS_novelGene_ENSMUSG00000092862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTTATACAGAGAACAAT	NA	False	NA	NA	False	NA	NA	NA	40993843	40992418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40992400_40993800
44233	chr7	+	2247	8	NNC	ENSMUSG00000045411.17	novel	970	6	NA	NA	121	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	345.539507177411	1	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAACTTCTGCCTTCGTG	NA	False	NA	NA	False	NA	NA	NA	43896362	43901687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896470_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
44237	chr11	-	1307	10	NNC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	213.030398340903	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTTAATGTGTGTTCTC	NA	False	NA	NA	False	NA	NA	NA	59730661	59708623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59708935_59709244_59709326_59710830_59710948_59717190_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
44239	chr1	-	962	7	ISM	ENSMUSG00000055067.16	ENSMUST00000068437.13	3360	9	154438	2209	-105057	-5	3prime_fragment	FALSE	canonical	3	343	junction_1	12.7758452644912	1119	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACTGGCGACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	178921967	178784819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899
44240	chr2	+	2305	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	83	0	15	0	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	190	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	25390844	25395483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
44241	chr8	-	1611	10	NNC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	165.538179550486	7	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	NA	NA	NA	110335013	110320108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_110320279_110320464_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
44242	chr8	+	1873	13	NNC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	111.088647034699	757	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGTTCCTTTGGATGA	NA	False	NA	NA	False	NA	NA	NA	117648480	117668243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117655711_117655818_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
44244	chr2	-	1735	14	NNC	ENSMUSG00000027620.17	novel	2810	17	NA	NA	6	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1139.16395690439	1	56	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTGAAAAATAAAAATGTTA	NA	False	NA	NA	False	NA	NA	NA	156022056	155989886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000368_156000956_156001162_156003487_156003554_156003799_156003886_156004648_156004802_156006725_156006831_156014743_156014943_156021080_156021161_156021806
44246	chr13	-	1282	8	NNC	ENSMUSG00000021477.10	novel	1971	8	NA	NA	0	-582	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	478.439342113117	155	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGACTTCAGTGTGTAA	NA	False	NA	NA	False	NA	NA	NA	64518120	64511609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515759_64515974_64516053_64516841_64516979_64518049
44247	chr12	+	4193	2	ISM	ENSMUSG00000037896.18	ENSMUST00000084968.14	5684	12	70458	37	70011	-37	3prime_fragment	FALSE	canonical	3	95	junction_1	0	63	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATTGATGTAATAAAATAC	8340	False	NA	NA	False	NA	NA	NA	111076242	111082298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_111076445_111078307
44248	chr11	+	2434	18	NNC	ENSMUSG00000034121.13	novel	2194	7	NA	NA	-5040	-4	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	31.5170080957562	249	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCCTCTGTGGACTCTC	1416	False	NA	NA	False	NA	NA	NA	87739000	87754625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87739055_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
44249	chr5	-	2637	5	FSM	ENSMUSG00000053134.14	ENSMUST00000065388.11	2693	5	51	5	9	1	multi-exon	FALSE	canonical	3	72	junction_3	3.34477204006491	152	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTATTCCAATTCTT	NA	False	NA	NA	False	NA	NA	NA	31684066	31671912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680606_31683958
44250	chr12	+	1342	9	ISM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	10603	399	-43	-399	3prime_fragment	FALSE	canonical	3	2590	junction_2	167.632783189924	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGATAAATGTATGAAAT	NA	False	NA	NA	False	NA	NA	NA	17327198	17334372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
44251	chr4	+	1273	10	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	-71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7679.98629917759	2	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGTGCCCACCATCAAGA	NA	False	NA	NA	False	NA	NA	NA	150321696	150333259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328536_150328697_150328707_150331026_150331209_150331907_150332110_150332438_150332577_150332941
44252	chr4	-	1724	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	798.476950199566	2	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	7	True	NA	NA	False	NA	NA	NA	41098175	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093814_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
44253	chr5	+	3047	2	NNC	ENSMUSG00000040557.15	novel	1796	5	NA	NA	4	-152	intron_retention	FALSE	canonical	0	0	junction_1	0	2	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTAGAGCACTTTGGGAT	3454	False	NA	NA	False	NA	NA	NA	134961263	134971339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_134962282_134969310
44254	chr13	-	656	3	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	58641	5127	58570	-5127	3prime_fragment	FALSE	canonical	1	1	junction_2	2	4	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGACTGCAGAGAGAACAAGC	NA	False	NA	NA	False	NA	NA	NA	93577675	93571735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_93571928_93575946_93576258_93577522
44255	chr13	-	3332	1	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	64684	1692	64613	-1692	mono-exon	FALSE	NA	NA	NA	NA	NA	15	44	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGACATTTCAGACTATTG	NA	False	NA	NA	False	NA	NA	NA	93571632	93568300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_93568300_93571600
44256	chr2	-	1562	5	ISM	ENSMUSG00000026932.15	ENSMUST00000114159.9	6675	6	2066	4315	264	1214	3prime_fragment	FALSE	canonical	3	39	junction_4	3.89711431702997	12	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGTGATTTTTATT	3140	False	NA	NA	False	NA	NA	NA	25980123	25949861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25950486_25951584_25951683_25952203_25952310_25954465_25954631_25979554
44257	chr2	-	3398	1	ISM	ENSMUSG00000026932.15	ENSMUST00000114159.9	6675	6	33230	15	3543	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	18	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAATTCAAACCCAGCTTT	NA	False	NA	NA	False	NA	NA	NA	25948959	25945561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25945600_25949000
44258	chr9	-	1718	1	Intergenic	novelGene_980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAATGCTTGAGTGAATG	NA	False	NA	NA	False	NA	NA	NA	3493596	3491878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_3491900_3493600
44259	chr8	+	687	5	FSM	ENSMUSG00000031782.16	ENSMUST00000159424.8	726	5	4	35	4	-35	multi-exon	FALSE	canonical	3	153	junction_1	12.5797456254091	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACATTAGCTCTCGAGC	NA	False	NA	NA	False	NA	NA	NA	95565036	95577310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142
44261	chr4	-	3130	1	ISM	ENSMUSG00000055296.15	ENSMUST00000068792.13	15981	18	77269	116	53290	-116	mono-exon	FALSE	NA	NA	NA	NA	NA	58	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTATTACACAAATGCCG	4449	False	NA	NA	False	NA	NA	NA	56870168	56867038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_56867000_56870200
44263	chr6	+	1343	5	Antisense	novelGene_ENSMUSG00000002870.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGATTAAGAGGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	88860455	88864057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_88861092_88861356_88861516_88861665_88861846_88862824_88863077_88863941
44264	chr10	-	583	1	Intergenic	novelGene_3445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTCTGCATGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	60074974	60074391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_60074400_60075000
44265	chr15	-	3690	28	FSM	ENSMUSG00000022469.18	ENSMUST00000126854.9	4005	28	128	187	-52	-1	multi-exon	FALSE	canonical	3	28	junction_8	8.12572672702261	74	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACGTGTGTGTTCTACCG	307	False	NA	NA	False	NA	NA	NA	97665599	97642837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648069_97648149_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642_97664856_97665275
44266	chr4	+	1380	8	NNC	ENSMUSG00000028618.12	novel	1775	8	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	565.36201153034	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTTGAGTGTTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	107035942	107058190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_107036115_107042974_107043081_107044815_107044896_107047761_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
44267	chr7	-	1152	6	Antisense	novelGene_ENSMUSG00000033685.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	371	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGAACTTCACAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	100148832	100146084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100146153_100146298_100146513_100147282_100147478_100147552_100147654_100147939_100148123_100148441
44268	chr2	+	2816	21	NIC	ENSMUSG00000026806.16	novel	3271	20	NA	NA	203	-361	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	37.1276177528265	2	56	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTTATTTTCTTAGTCC	NA	False	NA	NA	False	NA	NA	NA	28730673	28795222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_28730873_28734849_28735107_28735209_28735286_28736005_28736050_28736774_28736884_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765701_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
44269	chr6	+	1570	7	NNC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34134	-1303	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	66	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCACGAACGACTGGGAC	2923	False	NA	NA	False	NA	NA	NA	125437252	125471629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125438273_125439076_125439167_125439289_125439387_125440645_125440727_125441361_125441452_125449375_125449475_125471536
44270	chr7	+	3317	11	FSM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	26	2738	26	-3	multi-exon	FALSE	canonical	3	100	junction_4	19.6022957839127	335	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGAATTCTCCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	131012355	131047935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130_131039221_131042930_131043069_131045197_131045298_131045965
44271	chr2	-	3599	30	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	32	-6	combination_of_known_junctions	FALSE	canonical	2	2	junction_29	24.5422298573981	47	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCCCTGTTACTGCCT	NA	False	NA	NA	False	NA	NA	NA	33021630	32876241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32876843_32879517_32879645_32880575_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33021602
44272	chr14	-	1856	3	NNC	ENSMUSG00000075486.11	novel	519	3	NA	NA	5	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	218.5	1799	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACCACTCCTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	101878117	101870424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_101871829_101874389_101874545_101877820
44274	chrX	-	1309	11	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCGCGACCGCCGGAAAC	NA	False	NA	NA	False	NA	NA	NA	100489740	100473301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100473368_100474100_100474157_100480812_100480954_100483079_100483286_100485120_100485420_100486531_100486633_100486903_100487097_100487881_100487963_100488289_100488396_100488899_100488939_100489719
44275	chr3	+	2586	11	NNC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	86.934515585008	5	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTATGCCTTCATAGT	NA	False	NA	NA	False	NA	NA	NA	116306775	116343629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116306841_116313885_116314010_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681_116342426_116343006
44276	chr7	-	2888	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	17	-3	0	3	multi-exon	TRUE	canonical	3	174	junction_8	14.1585607937389	228	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGTTTCCTTCTTCTCTG	8941	False	NA	NA	False	NA	NA	NA	121580917	121522058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
44277	chr10	-	2445	3	FSM	ENSMUSG00000020228.12	ENSMUST00000148241.8	1335	3	-469	-641	-469	-459	multi-exon	FALSE	canonical	3	71	junction_2	2.5	1	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGAGTTTTTTTTTGGGG	NA	False	NA	NA	False	NA	NA	NA	119928583	119919971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_119920879_119925312_119925781_119927513
44278	chr2	-	1973	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	6	-2	-1	1	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGCTGTTTTTCCTTT	5297	False	NA	NA	False	NA	NA	NA	84508394	84501658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
44279	chr7	-	2844	4	Fusion	ENSMUSG00000074166.8_ENSMUSG00000056383.11	novel	2071	5	NA	NA	-9	-7	intron_retention	FALSE	canonical	0	0	junction_3	26.8824602048746	1	110	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAAATTTCCTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	41148841	41022353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_41024799_41026169_41026297_41037531_41037680_41148717
44280	chr6	-	1412	6	NNC	ENSMUSG00000067702.6	novel	1509	5	NA	NA	8	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	266.448794330168	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGATATATTATTAAAATT	3469	False	NA	NA	False	NA	NA	NA	125262997	125255265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125255467_125255526_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
44281	chr11	-	2729	13	FSM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	41	0	10	0	multi-exon	FALSE	canonical	3	76	junction_11	8.42944574426786	88	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	119989516	119981356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334_119988408_119989451
44283	chr2	-	3364	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	7	-2	intron_retention	FALSE	canonical	3	37	junction_3	52.2636046881575	9	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAGATGATTTGATCCAA	8860	False	NA	NA	False	NA	NA	NA	93841090	93810983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
44284	chr5	+	2047	8	ISM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	22935	5	-4127	-5	3prime_fragment	FALSE	canonical	3	507	junction_3	41.8071373654533	1	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGTGTGAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	33515787	33530635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
44285	chr11	+	3038	18	NIC	ENSMUSG00000020900.16	novel	7791	41	NA	NA	-322	-5863	intron_retention	FALSE	canonical	3	142	junction_8	20.3444388905574	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGAAACAGCGGGCACTGG	NA	False	NA	NA	False	NA	NA	NA	68673935	68697982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68674331_68675752_68675823_68676021_68676183_68676443_68676553_68676650_68676783_68678163_68678371_68680930_68681069_68681442_68681567_68682688_68682861_68683881_68684095_68688157_68688303_68689075_68689283_68691640_68691746_68692402_68692556_68692933_68693183_68693665_68693879_68695452_68695666_68697950
44286	chr16	+	2960	9	Antisense	novelGene_ENSMUSG00000119162.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCACGGTCTCCGCCGCA	NA	False	NA	NA	False	NA	NA	NA	43681781	43710019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_43683661_43687769_43687891_43689308_43689463_43691985_43692190_43697040_43697205_43698319_43698399_43700669_43700720_43701357_43701577_43709929
44289	chrX	+	2280	7	NNC	ENSMUSG00000009995.18	novel	2368	9	NA	NA	15	1	intron_retention	FALSE	canonical	3	13	junction_1	88.6917257821846	3	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	73326409	73333755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73326492_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73332789_73332904
44290	chr5	+	563	5	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	405	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7001.63200618256	485	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	58	True	NA	NA	NA	121343876	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343919_121344729_121344874_121345209_121345217_121346453_121346639_121346844
44291	chr7	-	1198	14	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	7	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	663.10709372731	2	24	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTGAAAACTGGACCTC	-6	True	NA	NA	False	NA	NA	NA	45083694	45071335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45071343_45071875_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
44292	chr13	+	3270	11	NIC	ENSMUSG00000062822.9	novel	2795	13	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_4	45.3766459756558	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119599309	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119610368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
44296	chr2	+	1794	9	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	28	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	143.149397483887	1	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTGCTTCAATAAATCT	19	False	NA	NA	False	NA	NA	NA	13578790	13587607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13578872_13579204_13579806_13583166_13583316_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
44297	chr8	-	2446	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	2	-1	2	0	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	NA	False	NA	NA	NA	11685752	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
44298	chrX	+	1185	6	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	4	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1194.5192505774	88	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543401	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552815_161560789_161560879_161561343
44299	chr19	+	2624	7	Antisense	novelGene_ENSMUSG00000036098.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGACGATGGGGCAGGGC	2357	False	NA	NA	False	NA	NA	NA	10185891	10192216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_10187831_10187965_10188037_10189070_10189178_10189509_10189584_10189804_10189898_10191426_10191672_10192121
44301	chr6	+	1745	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	6	1	6	-1	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	383	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGAGGAACTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	91855039	91876823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
44302	chr19	+	1106	2	Intergenic	novelGene_1271	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAAAGAGTC	NA	False	NA	NA	False	NA	NA	NA	41513794	41515397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41514224_41514720
44303	chr19	-	4782	8	ISM	ENSMUSG00000039982.9	ENSMUST00000045521.9	5226	9	8902	-2	8902	2	3prime_fragment	TRUE	canonical	3	5	junction_1	4.80645824036021	21	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAAATTGTCGTTACTCC	7056	False	NA	NA	False	NA	NA	NA	12469916	12443699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_12447074_12450593_12450684_12455489_12455652_12459437_12459591_12460409_12460472_12462627_12462790_12463792_12463855_12469199
44304	chrX	-	2697	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	-14	13	-14	-13	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	109	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAAATTCAAAGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	151125435	151119863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
44305	chr8	-	1709	8	FSM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	-80	0	-80	0	multi-exon	FALSE	canonical	3	556	junction_1	38.5115938016444	1540	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	False	NA	NA	False	NA	NA	NA	106292759	106251096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
44306	chr11	+	3231	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	138	-2407	138	-15	multi-exon	FALSE	canonical	3	1006	junction_1	419	4101	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTTTCCTCCCCAAGTC	4149	False	NA	NA	False	NA	NA	NA	120489495	120499009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120489697_120490067_120490195_120496106
44307	chr9	+	1295	8	NNC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	13	1	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	248.007899808347	49	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9085	False	NA	NA	False	NA	NA	NA	15217522	15223401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15218218_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223113
44308	chr7	+	2104	7	ISM	ENSMUSG00000045411.17	ENSMUST00000146155.8	988	8	525	-1214	81	-24	3prime_fragment	FALSE	canonical	0	0	junction_2	315.509508573038	1	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTAAATGGCTGGTTCAT	NA	False	NA	NA	False	NA	NA	NA	43896735	43901712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
44309	chr15	-	577	1	ISM	ENSMUSG00000022283.16	ENSMUST00000146327.2	2916	3	4323	578	816	-578	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACCCAAGACTATAGCC	4700	False	NA	NA	False	NA	NA	NA	36604894	36604317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36604300_36604900
44310	chr18	+	1763	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	-247	0	-247	0	multi-exon	FALSE	canonical	3	191	junction_8	17.7325814376939	776	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	74912020	74939279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
44312	chr3	-	3827	17	ISM	ENSMUSG00000068876.17	ENSMUST00000107272.7	4963	21	8401	6	8389	-6	3prime_fragment	FALSE	canonical	3	13	junction_12	7.85190064570356	34	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAATTCTTGTCTTCATT	NA	False	NA	NA	False	NA	NA	NA	94685373	94667381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_94668809_94669080_94669245_94669865_94669975_94670288_94670408_94670494_94670579_94671768_94671859_94672805_94672968_94674426_94674598_94676469_94676728_94677271_94677479_94677802_94678013_94680437_94680571_94680806_94680956_94681512_94681726_94682209_94682343_94683418_94683547_94685303
44313	chr6	+	1365	6	NNC	ENSMUSG00000079426.14	novel	2270	6	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	512.673541349659	2	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTGCTCTGTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	113355140	113366614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362495_113362622_113365731
44314	chr9	+	2859	16	ISM	ENSMUSG00000034252.15	ENSMUST00000176607.8	3319	18	10734	-455	-116	-1	3prime_fragment	FALSE	canonical	3	313	junction_3	30.8216374213528	178	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATGATTAATTTGATATT	NA	False	NA	NA	False	NA	NA	NA	80021187	80051449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_80021397_80023813_80024047_80025759_80025925_80028608_80028643_80029145_80029341_80031001_80031229_80033424_80033535_80033617_80033735_80038020_80038141_80040170_80040264_80043739_80044165_80046325_80046430_80048099_80048189_80049364_80049434_80049526_80049678_80050931
44315	chr2	+	2285	5	NNC	ENSMUSG00000027463.15	novel	2590	5	NA	NA	-492	-238	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	42.0743389728229	6	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGATGGGCTGTGTACA	NA	False	NA	NA	False	NA	NA	NA	151841292	151850904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151841859_151845971_151846214_151847625_151847940_151849400_151849525_151849865
44316	chr7	+	2260	5	Antisense	novelGene_ENSMUSG00000048012.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTCGCTAGACTAGAACA	7951	False	NA	NA	False	NA	NA	NA	44382261	44394636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44384073_44387392_44387459_44388926_44389059_44391111_44391292_44394565
44317	chr5	+	1282	9	NNC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	-19	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	461.375643456609	7	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGCCAAATAAAGGCAGT	5388	False	NA	NA	False	NA	NA	NA	100666289	100695632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100695405
44318	chrX	+	2580	11	ISM	ENSMUSG00000031256.12	ENSMUST00000113287.8	3661	14	87	10183	-37	0	5prime_fragment	FALSE	canonical	3	157	junction_8	166.206979396173	137	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	132960022	132976612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261
44319	chr12	-	1892	5	FSM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	4100	17	-1024	-17	multi-exon	FALSE	canonical	3	499	junction_2	77.0632856813152	7	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAAGAGTAAGAGAAATTG	5307	False	NA	NA	False	NA	NA	NA	101010828	101005787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748
44320	chr5	-	2433	7	NIC	ENSMUSG00000023348.12	novel	2168	9	NA	NA	8	-249	intron_retention	FALSE	canonical	3	95	junction_4	16.9057846773096	6	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCACTTCCAAGTCTGTTC	1732	False	NA	NA	False	NA	NA	NA	137312461	137308164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_137308437_137308546_137309094_137310135_137310306_137310401_137311352_137311612_137311739_137311842_137311971_137312221
44321	chr5	+	1683	12	NNC	ENSMUSG00000029387.11	novel	2672	13	NA	NA	-1367	254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	222.707457374575	1	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTTTCCTTAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	124720542	124734904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124720591_124721996_124722053_124722203_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
44322	chr1	+	737	1	Intergenic	novelGene_488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATCACCTCGCTGGCATT	NA	False	NA	NA	False	NA	NA	NA	180412402	180413139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_180412400_180413100
44323	chr1	+	3052	4	NIC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	8381	5638	intron_retention	FALSE	canonical	3	1402	junction_3	187.386113561159	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCCTGCACTGACACAAC	3119	False	NA	NA	False	NA	NA	NA	180405171	180412364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180406934_180408097_180408201_180410322_180410440_180411294
44324	chr5	+	4813	16	NNC	ENSMUSG00000042744.17	novel	15482	76	NA	NA	29316	-18	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	5.25948877955094	34	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGACTGACCTAAGAGT	3611	False	NA	NA	False	NA	NA	NA	121487401	121506622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121487789_121488492_121488701_121491553_121491778_121491876_121492029_121493628_121493733_121494265_121494390_121496206_121496398_121497359_121497507_121498167_121498288_121498694_121498851_121500503_121500608_121500780_121501003_121501805_121501970_121502598_121502795_121502929_121503153_121504531
44325	chr9	-	1855	10	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	5198	-226	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	87.9681479953306	16	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTTTCAAAACGTATT	NA	False	NA	NA	False	NA	NA	NA	27032648	27008905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27011590_27011764_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27032579
44326	chr11	+	2115	10	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-10	0	intron_retention	FALSE	canonical	3	44	junction_2	34.5350063944784	152	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	NA	False	NA	NA	NA	102992524	103003026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102992615_102993507_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
44327	chr9	+	2488	2	ISM	ENSMUSG00000055720.11	ENSMUST00000215751.2	471	3	-2189	552	-2189	-12	5prime_fragment	FALSE	canonical	3	307	junction_1	0	117	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGCTCTAGGTAAGTAC	NA	False	NA	NA	False	NA	NA	NA	57824259	57827394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_57826675_57827321
44328	chr14	-	3297	4	ISM	ENSMUSG00000022119.16	ENSMUST00000172122.8	3664	6	5704	7	5704	-7	3prime_fragment	FALSE	canonical	3	18	junction_1	102.125195498249	2	22	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACAGTTGTTAATGT	NA	False	NA	NA	False	NA	NA	NA	105362069	105344193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_105347239_105354421_105354536_105358417_105358505_105362018
44329	chr5	-	1642	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	4	170	4	-170	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGAAGGAAGGTACGGGG	NA	False	NA	NA	False	NA	NA	NA	134975784	134974142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134974100_134975800
44331	chr1	-	1994	7	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	410.834381337406	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624059	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599773_177612482_177612565_177623777
44332	chr16	+	3572	1	Antisense	novelGene_ENSMUSG00000046962.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	76	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATGAGCACCTCCTTTC	5440	False	NA	NA	False	NA	NA	NA	97751242	97754814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_97751200_97754800
44333	chr14	-	2388	9	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	intron_retention	FALSE	canonical	3	19	junction_2	116.29374177057	1	46	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607998	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59593900_59596924_59597033_59599182_59599305_59607902
44334	chr11	+	1448	9	NNC	ENSMUSG00000025156.18	novel	1925	13	NA	NA	-5	-22	intron_retention	FALSE	non_canonical	0	0	junction_6	400.332908340046	2	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATTAAAGTACAAGTTGA	1419	False	NA	NA	False	NA	NA	NA	120675125	120679901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677604_120678897_120678969_120679069_120679208_120679287
44335	chr7	+	2927	12	NNC	ENSMUSG00000031015.9	novel	4027	12	NA	NA	-9	-1038	intron_retention	FALSE	non_canonical	0	0	junction_11	99.2804692285846	3	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGCTGCTTAATAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	109820952	109881675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880464
44336	chr11	+	2046	5	ISM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	-13	2890	8	-56	5prime_fragment	FALSE	canonical	3	13	junction_2	33.1313673125635	100	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACGTGTGTCCTGCTGGT	NA	False	NA	NA	False	NA	NA	NA	5712136	5731820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205
44337	chr16	+	3616	11	FSM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	172	1	-10	-1	multi-exon	FALSE	canonical	3	116	junction_9	10.1607086367044	92	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATAATAGTTGGTTT	5323	False	NA	NA	False	NA	NA	NA	37597406	37656875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_37597515_37597655_37597713_37636067_37636173_37639265_37639396_37641517_37641551_37642962_37643094_37647087_37647207_37649068_37649182_37649475_37649587_37651918_37651996_37654243
44339	chr4	-	1263	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	968.310198231951	53	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093458_41093828_41093859_41094331_41094385_41094700_41094839_41095144_41095272_41098001
44340	chr9	-	1118	11	NNC	ENSMUSG00000061559.16	novel	1187	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	35	junction_6	363.182116850486	8	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5441	False	NA	NA	False	NA	NA	NA	54641783	54624442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631708_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641758
44341	chrX	-	2054	10	NNC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	-4	-801	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	16.9538225414044	141	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGAGTCTTGATTCATA	NA	False	NA	NA	False	NA	NA	NA	36253148	36179484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205734_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
44342	chr17	+	2285	5	FSM	ENSMUSG00000024014.9	ENSMUST00000234294.2	1578	5	-41	-666	-41	-1	multi-exon	FALSE	canonical	3	1677	junction_3	119.340636415263	908	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGTTTTCCATTCAT	NA	False	NA	NA	False	NA	NA	NA	29710237	29715085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29710406_29710493_29710545_29710638_29711006_29712695_29712873_29713563
44343	chr8	+	4802	15	NIC	ENSMUSG00000071064.16	novel	7581	15	NA	NA	-210	-118	combination_of_known_junctions	TRUE	canonical	2	3	junction_2	2.89704282723904	21	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGCCTCCCCAGCCATCA	4836	False	NA	NA	False	NA	NA	NA	79754855	79917365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_79755359_79786878_79787920_79796999_79797173_79802686_79803168_79818461_79818696_79844803_79845044_79847111_79847170_79863188_79863293_79902461_79902600_79905518_79905709_79906673_79906841_79912226_79912419_79912804_79912983_79914777_79914811_79916295
44344	chr11	-	799	7	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGGAGTGACCTCTCAGA	NA	False	NA	NA	False	NA	NA	NA	48696910	48692573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48692662_48693099_48693246_48694228_48694325_48694682_48694794_48694980_48695123_48696370_48696481_48696804
44347	chr14	-	1063	7	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1220.96901407584	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733448_63737697_63737770_63746158
44348	chr5	+	1462	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	13	-444	-2	-8	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	3156	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAGAATTGAAGTAAAGT	9199	False	NA	NA	False	NA	NA	NA	30824253	30832166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
44349	chr4	-	2089	6	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	746.392497282763	3	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTGAAGGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	137085014	137047010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063443_137084956
44350	chr5	+	2764	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-13	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	374.982999614649	1	162	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAAATTCCACCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	111478615	111536215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
44351	chr7	-	1265	5	ISM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	460	5	359	-2	intron_retention	FALSE	canonical	3	20	junction_3	4.33012701892219	3	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGGAACTGTGTGTCTG	7377	False	NA	NA	False	NA	NA	NA	4525067	4521308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343
44352	chr5	-	2694	3	ISM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	12161	929	12161	-929	3prime_fragment	FALSE	canonical	3	219	junction_1	1	1	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAGCAAAGACTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	135411239	135405923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_135407029_135407488_135407612_135409773
44353	chr5	-	1450	5	NNC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	11	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	350.334393829667	26	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGCTTGCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	130284308	130274572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_130275303_130277126_130277292_130279654_130279831_130282788_130282910_130284050
44355	chr4	-	2033	13	NNC	ENSMUSG00000000409.15	novel	2074	13	NA	NA	-196	-12	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_12	60.3522069926932	15	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAGGTTGTACATTTTTC	NA	False	NA	NA	False	NA	NA	NA	129452380	129442153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873_129451984_129452319
44356	chr14	+	3830	2	NIC	ENSMUSG00000022109.7	novel	2103	6	NA	NA	4120	-3	intron_retention	FALSE	canonical	3	317	junction_1	0	5	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTAATTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	73751597	73755982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_73754779_73755333
44357	chr10	-	785	5	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	5616	-869	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	915.137250635117	3	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTCGTCAAGCCCCTCT	5747	False	NA	NA	False	NA	NA	NA	128396122	128394505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395394_128395941
44358	chr4	+	2844	17	NIC	ENSMUSG00000028894.19	novel	3809	24	NA	NA	9769	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_3	42.9363173054001	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGTTCTCTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	124645439	124695304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124645486_124671133_124671231_124674163_124674332_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
44359	chr3	+	3421	2	ISM	ENSMUSG00000038861.15	ENSMUST00000133297.2	923	5	4011	-442	-1374	-160	intron_retention	FALSE	canonical	3	33	junction_1	0	36	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTCTTGTTGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	94910250	94913932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_94911684_94911944
44360	chr13	-	1142	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	107	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_4	463.256408482387	6163	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTATTTCTCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	100881584	100872355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881156_100881238
44361	chr2	-	1786	10	NNC	ENSMUSG00000017664.17	novel	1991	10	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	81.2874794847746	9	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTACCAGCCTCTGGAGAC	9929	False	NA	NA	False	NA	NA	NA	165125520	165118478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125201_165125328
44362	chr10	+	2559	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	120	2344	-9	-806	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	1	115	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAATGCAATTAAAGTA	NA	False	NA	NA	False	NA	NA	NA	111808688	111821993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
44363	chr2	+	3683	6	FSM	ENSMUSG00000026730.13	ENSMUST00000154269.7	1232	6	22	-2473	1	-2	multi-exon	FALSE	canonical	3	36	junction_1	7.33212111192934	154	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAGAGTCTAAATGTATT	4734	False	NA	NA	False	NA	NA	NA	12928873	13008264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_12929010_12979179_12979265_12982970_12983429_12985103_12985370_12999560_12999702_13005667
44366	chr7	-	2306	7	NNC	ENSMUSG00000030610.14	novel	2269	5	NA	NA	44	-1431	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	44.8209400466642	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGGAGTTGAAGCACTT	NA	False	NA	NA	False	NA	NA	NA	78496967	78472725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78473009_78477319_78477413_78477516_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
44367	chr18	+	2304	21	NNC	ENSMUSG00000024507.7	novel	2684	24	NA	NA	-2922	-85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	110.959722422147	1	84	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGGTTTCTTTAGACT	NA	False	NA	NA	False	NA	NA	NA	50272513	50329251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_50272623_50273406_50273467_50275636_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295274_50297695_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316341_50324778_50324907_50328921
44368	chr6	-	2729	9	NNC	ENSMUSG00000030322.13	novel	3614	8	NA	NA	7	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	45.8530260724415	54	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTAAGGTCCCTTTGGC	7894	False	NA	NA	False	NA	NA	NA	115830319	115817665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_115818441_115819304_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
44369	chr15	-	3321	4	ISM	ENSMUSG00000036061.11	ENSMUST00000229371.2	3882	7	3765	20	0	-3	3prime_fragment	TRUE	canonical	3	65	junction_3	17.3781471969828	93	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGTGTTTTCCCCCCTGA	NA	False	NA	NA	False	NA	NA	NA	103071754	103061736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_103064629_103066043_103066346_103066583_103066655_103071698
44370	chrX	+	2372	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	283	11	14	-7	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	1	110	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAACTTAAGCCTGGCTC	6231	False	NA	NA	False	NA	NA	NA	73348886	73355457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
44371	chr4	-	2041	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	11	-3	combination_of_known_splicesites	FALSE	canonical	3	73	junction_5	86.0503728444373	34	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACTGGGTCCAGGCTGA	NA	False	NA	NA	False	NA	NA	NA	130253725	130209178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130247928_130248050_130253668
44372	chr11	-	1791	9	NNC	ENSMUSG00000007646.14	novel	3944	9	NA	NA	21	33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	65.3677099185829	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTGTGTGTATATGTA	NA	False	NA	NA	False	NA	NA	NA	87295311	87269383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286240_87288449_87288584_87292215_87292259_87293517_87293683_87295129
44373	chr6	+	3632	2	ISM	ENSMUSG00000107476.4	ENSMUST00000204484.3	6065	7	25213	6	17163	-6	3prime_fragment	FALSE	canonical	2	6	junction_1	0	14	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATTGTTGTCTTTATA	2166	False	NA	NA	False	NA	NA	NA	48506534	48511760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_48507375_48508968
44374	chr11	-	1947	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	0	2	0	-2	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	592	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGACGTAGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	3882044	3867193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
44375	chr2	+	1481	8	NIC	ENSMUSG00000026999.15	novel	1559	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_5	110.771874423363	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTTTGGAAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	80469171	80489250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80486292_80486422_80487532_80487698_80488664
44377	chr14	-	259	1	Intergenic	novelGene_569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTCTAGCTTTGTAAGA	1962	False	NA	NA	False	NA	NA	NA	51040099	51039840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_51039800_51040100
44378	chr5	+	1382	9	NNC	ENSMUSG00000029621.15	novel	1632	10	NA	NA	8	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	122.025612065664	8	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	NA	False	NA	NA	NA	145020647	145045571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041675_145045310
44379	chr13	+	3257	10	NNC	ENSMUSG00000093930.3	novel	3245	10	NA	NA	-30	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	309.327745798833	1	197	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAATATTTCAGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	120151951	120169610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120161199_120161658_120162043_120162170_120162609_120162777_120164070_120164237_120165055_120165227_120165960_120166046_120166578_120166719_120166887_120167048_120167924
44380	chr7	+	2561	2	NNC	ENSMUSG00000040189.19	novel	1078	5	NA	NA	48	2986	intron_retention	FALSE	canonical	3	12	junction_1	0	75	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTAAGAGTTGCCTTGG	3208	False	NA	NA	False	NA	NA	NA	45573714	45577477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45574014_45575215
44381	chr11	-	1421	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	525.70179775733	8	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190882	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183695_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185526_119186298_119186362_119186892_119186960_119188630_119188704_119190653
44382	chr17	+	2704	6	FSM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	1	-7	1	0	multi-exon	FALSE	canonical	3	153	junction_1	55.9335319821661	3	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	880	False	NA	NA	False	NA	NA	NA	23819830	23829993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
44384	chr9	+	1071	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1923.12694588787	21	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956744	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959416_119959886_119959963_119960065_119960232_119960465
44387	chr14	-	3686	20	NIC	ENSMUSG00000021820.19	novel	1937	22	NA	NA	13	-8	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	10.4229131778775	72	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTTTAAACAGTCCATT	NA	False	NA	NA	False	NA	NA	NA	20844143	20784958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20791445_20791560_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
44388	chr8	-	3068	9	Antisense	novelGene_ENSMUSG00000019428.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	67	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTGCGACCCTCACCTG	NA	False	NA	NA	False	NA	NA	NA	70987968	70980702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70981914_70982037_70982322_70983586_70983755_70983829_70983921_70984168_70984646_70985224_70985398_70986764_70986843_70987130_70987263_70987514
44389	chr2	-	1607	10	NIC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-6	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	135.312350133923	49	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGTTTGGGGAT	NA	False	NA	NA	False	NA	NA	NA	73044762	72923542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_72924069_72927488_72927612_72929635_72929733_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
44390	chr19	-	2462	9	NNC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	20.2113829314077	127	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	45548955	45540713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_45541763_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
44391	chr3	+	2656	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	66	0	66	0	multi-exon	FALSE	canonical	3	67	junction_2	6.5	223	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTGGCCTCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	137329498	137334094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137329645_137329892_137330035_137331726
44392	chr9	+	1345	8	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	13	1	combination_of_known_junctions	FALSE	canonical	3	29	junction_7	238.474231697417	149	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9085	False	NA	NA	False	NA	NA	NA	15217522	15223401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223113
44394	chr14	+	1904	1	NIC	ENSMUSG00000021794.17	novel	3390	13	NA	NA	7627	-363	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAATGTATGTTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	34064955	34066859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_34065000_34066900
44396	chr5	+	828	8	ISM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	227	700	-15	-700	5prime_fragment	FALSE	canonical	3	4702	junction_3	266.770481492834	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGGAAGGAAGGAGTCGTT	680	False	NA	NA	False	NA	NA	NA	135807560	135818545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479
44397	chr1	+	1346	1	NIC	ENSMUSG00000026131.21	novel	23201	103	NA	NA	8786	1114	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCCCAAACTCCTACTTG	NA	False	NA	NA	False	NA	NA	NA	34342312	34343658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_34342300_34343700
44398	chr7	-	1777	6	FSM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	3	0	3	0	multi-exon	FALSE	canonical	3	105	junction_3	4.4	321	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTTTTCTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	98887823	98868290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664_98881844_98887681
44402	chr15	-	1870	7	NNC	ENSMUSG00000018040.10	novel	4363	7	NA	NA	-23	-21	intron_retention	FALSE	canonical	3	9	junction_4	343.775928315071	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAATAAAATTCTTCCACC	NA	False	NA	NA	False	NA	NA	NA	83006975	83000069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003474_83004092_83004219_83006032_83006176_83006862
44403	chr7	+	3851	5	FSM	ENSMUSG00000037640.16	ENSMUST00000042641.14	2727	5	73	-1197	73	1197	multi-exon	FALSE	canonical	3	15	junction_1	62.997519792449	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGGAATAAAGACTTTCA	NA	False	NA	NA	False	NA	NA	NA	27431008	27451083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27431090_27436360_27436414_27437727_27437855_27440381_27440481_27447592
44404	chr7	-	1412	8	NNC	ENSMUSG00000025465.14	novel	1557	8	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	7	junction_4	602.701164655877	114	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGTAACTATTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	139696333	139685630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690492_139691624_139691709_139692331_139692460_139692848_139693047_139696219
44405	chrX	-	3497	1	FSM	ENSMUSG00000087522.4	ENSMUST00000142240.2	1245	1	-362	-1890	-362	1890	mono-exon	FALSE	NA	NA	NA	NA	NA	33	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTGGTGGGAGATGAG	NA	False	NA	NA	False	NA	NA	NA	94042651	94039154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_94039200_94042700
44406	chr14	-	1989	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	10	26	6	-10	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	568	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAATTGGAATTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	52542575	52532323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
44408	chr5	+	858	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6417.42345805542	27	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121343466	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343693_121343849_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
44409	chr4	+	3130	15	FSM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	244	8	1	-5	multi-exon	FALSE	canonical	3	190	junction_3	22.7807876447301	1	128	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTTATATTTTGATCG	NA	False	NA	NA	False	NA	NA	NA	139350420	139376993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
44410	chr10	-	2157	5	Antisense	novelGene_ENSMUSG00000096856.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTTCCCTCAGACTCGC	7737	False	NA	NA	False	NA	NA	NA	81501546	81484922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81485000_81497830_81497956_81498155_81498218_81498754_81500270_81501168
44411	chr18	-	2660	6	FSM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	21	-664	-1	664	multi-exon	FALSE	canonical	3	53	junction_4	12.1061967603372	189	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAGCATTGAGTAC	NA	False	NA	NA	False	NA	NA	NA	61840685	61829243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61831048_61831434_61831576_61832363_61832576_61835266_61835442_61836582_61836790_61840564
44412	chr13	-	2004	16	NNC	ENSMUSG00000009470.18	novel	8453	24	NA	NA	-6	-6215	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	141.160838132331	7	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGATAAAGATTTTATGAT	NA	False	NA	NA	False	NA	NA	NA	99062868	98991945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98992087_98993396_98993484_98994893_98995066_98996290_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
44413	chr7	+	1112	5	FSM	ENSMUSG00000006333.15	ENSMUST00000146927.2	813	5	-297	-2	15	1	multi-exon	FALSE	canonical	3	206	junction_3	7209.4740229437	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1338	False	NA	NA	False	NA	NA	NA	3707065	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
44414	chr19	+	1425	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	16	47	1	-47	multi-exon	FALSE	canonical	3	484	junction_7	32.2509294281512	1787	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTCAAGCCTTCCAGAA	NA	False	NA	NA	False	NA	NA	NA	5138588	5142862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
44416	chr8	+	1832	6	FSM	ENSMUSG00000031532.8	ENSMUST00000239436.2	1897	6	67	-2	-51	2	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	236	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTTTCGTGTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	34621783	34638001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
44417	chr14	-	3837	21	FSM	ENSMUSG00000021830.15	ENSMUST00000139526.9	5045	21	25	1183	2	-200	multi-exon	FALSE	canonical	3	25	junction_19	5.21152568831815	47	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGACTTACAATGTATGT	NA	False	NA	NA	False	NA	NA	NA	45456857	45372104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_45373431_45377874_45378066_45379429_45379591_45382398_45382538_45385285_45385371_45388794_45388932_45389214_45389384_45398790_45398851_45399696_45399841_45400388_45400513_45402803_45402865_45403183_45403351_45406694_45406846_45409970_45410062_45420502_45420625_45442798_45442874_45444185_45444260_45448612_45448696_45450742_45450982_45456452_45456507_45456673
44419	chr2	-	4622	23	ISM	ENSMUSG00000027276.8	ENSMUST00000028735.8	5612	26	14973	0	14973	0	3prime_fragment	TRUE	canonical	3	87	junction_14	17.0706480484306	59	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGTGTGGAGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	136943591	136923375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_136925402_136926201_136926353_136926494_136926627_136926841_136927076_136927165_136927276_136927837_136927952_136928996_136929083_136929535_136929564_136930031_136930149_136930315_136930430_136930516_136930631_136931131_136931246_136931684_136931850_136932774_136932926_136933355_136933530_136933869_136933917_136934416_136934531_136935126_136935241_136936372_136936487_136937366_136937487_136938112_136938244_136941975_136942037_136943500
44420	chr9	-	1589	7	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2181.46088283364	1	64	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775162	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110768866_110769139_110769888_110771396_110771507_110771597_110771708_110772219_110772322_110773258_110773312_110774891
44421	chr17	-	1895	7	NNC	ENSMUSG00000057789.15	novel	1974	7	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	49.5190760100478	43	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACACCTCGCCTGGCAT	NA	False	NA	NA	False	NA	NA	NA	27247549	27238790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27240010_27240140_27240240_27240290_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
44422	chr15	-	3189	17	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	0	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	8.71779788708135	1	196	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	6994	False	NA	NA	False	NA	NA	NA	98560775	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548694_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
44424	chr13	-	4152	3	NNC	ENSMUSG00000021650.8	novel	1704	10	NA	NA	19528	-23	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	181	5	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATAAAAGGTTCCTGTGC	8666	False	NA	NA	False	NA	NA	NA	99461685	99456177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_99456902_99458068_99459233_99459421
44426	chr14	+	1748	2	NNC	ENSMUSG00000036023.7	novel	342	3	NA	NA	-9	-692	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTTAATTGGGCTGAAT	NA	False	NA	NA	False	NA	NA	NA	51045393	51047335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_51046371_51046564
44427	chr2	+	3594	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	21	2	21	-2	multi-exon	FALSE	canonical	3	138	junction_1	7.5	262	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGGTCTGCCGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	172187505	172197667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172187768_172193374_172193545_172194505
44428	chr19	-	1809	12	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	981.261643611499	1	84	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTACGGTCTCCAGTGAC	3764	False	NA	NA	False	NA	NA	NA	7017334	6998072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7006068_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
44429	chr11	+	1105	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	3	-17550	intron_retention	FALSE	canonical	3	287	junction_2	383.5	1393	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGAAAATCTTCCTATT	9434	False	NA	NA	False	NA	NA	NA	88861080	88864230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861306_88861723_88861820_88863446
44430	chr9	-	4056	19	Intergenic	novelGene_998	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	69	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGAGGCTACTGCGCAAG	NA	False	NA	NA	False	NA	NA	NA	22591777	22387017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_22387484_22387862_22387924_22402115_22402235_22408002_22408156_22415338_22415404_22425273_22425388_22478998_22479182_22486410_22486492_22489932_22490112_22490753_22490889_22540235_22540415_22546904_22546984_22550025_22550078_22555038_22555143_22557258_22557362_22566517_22566659_22570342_22570442_22582080_22582252_22590205
44431	chr5	-	2330	1	FSM	ENSMUSG00000080935.4	ENSMUST00000121655.2	1293	1	-52	-985	-52	985	mono-exon	FALSE	NA	NA	NA	NA	NA	1	117	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAGCCAGAAAAAAAAAAAA	1743	False	NA	NA	False	NA	NA	NA	138363866	138361536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138361500_138363900
44432	chr7	+	2029	7	FSM	ENSMUSG00000030990.19	ENSMUST00000033292.14	1201	7	-39	-789	2	-8	multi-exon	FALSE	canonical	3	107	junction_5	27.0657635317306	97	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGCCAACAGTCTGAGG	596	False	NA	NA	False	NA	NA	NA	101872236	101887759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
44433	chr11	+	1867	4	NNC	ENSMUSG00000017837.13	novel	2097	4	NA	NA	1193	-32	intron_retention	FALSE	non_canonical	0	0	junction_3	161.171406341889	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAATAAAACCACAACTGC	NA	False	NA	NA	False	NA	NA	NA	100515029	100518401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100515126_100515768_100516011_100516819_100517011_100517063
44434	chr8	-	3183	13	Antisense	novelGene_ENSMUSG00000001482.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTACCGGCTCCTCCGCC	NA	False	NA	NA	False	NA	NA	NA	124189889	124169729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_124169790_124174055_124174258_124174526_124174646_124176034_124176138_124179487_124179632_124180965_124181102_124182147_124182314_124183142_124183257_124183398_124183530_124185102_124185169_124186257_124186395_124186553_124186667_124188197
44435	chr6	+	2316	11	NIC	ENSMUSG00000030204.11	novel	1764	12	NA	NA	35	-9	intron_retention	FALSE	canonical	3	514	junction_10	25.2792404949199	3	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTACCTGTGTGTGT	6650	False	NA	NA	False	NA	NA	NA	134988650	135000726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
44436	chr6	-	4164	18	FSM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	258	2	0	-2	multi-exon	FALSE	canonical	3	33	junction_9	6.4238957016875	77	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATCTGAACATCTTCAGG	NA	False	NA	NA	False	NA	NA	NA	97125885	97086986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97125220_97125792
44437	chr5	-	1331	12	NIC	ENSMUSG00000005378.18	novel	1516	13	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_10	298.632475414013	1234	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	False	NA	NA	False	NA	NA	NA	135092951	135081810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092701_135092776_135092867
44438	chr7	+	1336	4	ISM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	-13	2	0	-2	intron_retention	FALSE	canonical	3	17973	junction_3	363.518912850487	43	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACCTTCCTGTGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	12656244	12660609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663
44439	chr16	+	1949	8	FSM	ENSMUSG00000022827.15	ENSMUST00000130028.2	1960	8	12	-1	7	1	multi-exon	FALSE	canonical	3	12	junction_4	38.0767216904748	375	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGTGTCATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	37360273	37392745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37384030_37384129_37387681_37387754_37390749_37390789_37391391
44441	chr14	-	3436	11	FSM	ENSMUSG00000041471.10	ENSMUST00000111917.3	3317	11	-122	3	5	-3	multi-exon	FALSE	canonical	3	23	junction_8	23.9376272842569	53	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGTGAAGCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	34032445	33958992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_34030996_34031052_34032123
44444	chr1	+	2600	23	NNC	ENSMUSG00000062939.12	novel	2982	24	NA	NA	-10	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	8.55089285367565	91	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAAACATTTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	52047774	52146338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_52047888_52050941_52051071_52052948_52053094_52104473_52104573_52107904_52107998_52111019_52111099_52113835_52113922_52115691_52115844_52117652_52117812_52118899_52118993_52121676_52121737_52122122_52122231_52123237_52123283_52135943_52136028_52137545_52137645_52139482_52139619_52141010_52141061_52141275_52141371_52141639_52141777_52142006_52142199_52144364_52144432_52144826_52144936_52146068
44445	chr9	+	1293	4	NNC	ENSMUSG00000032336.18	novel	594	3	NA	NA	-6186	-6	intron_retention	FALSE	canonical	1	2	junction_1	171.215264117037	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTGCTTGGAATAATAC	NA	False	NA	NA	False	NA	NA	NA	58551295	58560155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_58551478_58557779_58557802_58558540_58558616_58559141
44446	chr6	-	2767	10	FSM	ENSMUSG00000029672.17	ENSMUST00000165576.8	2826	10	53	6	-15	-6	multi-exon	FALSE	canonical	3	400	junction_3	15.4416464292006	231	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGACGTGTAGTAGTTGC	9	True	NA	NA	False	NA	NA	NA	22356112	22306524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355993
44448	chr2	+	2565	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-51	0	intron_retention	FALSE	canonical	3	182	junction_6	18.7713514794124	300	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	NA	False	NA	NA	NA	180367120	180384073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180367245_180373672_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
44449	chr17	+	2299	10	NIC	ENSMUSG00000002280.12	novel	2062	11	NA	NA	0	23	intron_retention	FALSE	canonical	3	241	junction_4	18.6368809979925	410	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCCTTTCAAAGTTTTA	6951	False	NA	NA	False	NA	NA	NA	25992780	26001793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_26000353_26000661_26000820_26000989
44451	chr10	+	1249	8	Antisense	novelGene_ENSMUSG00002076354.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	42	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGCGAGAAGCTGCG	3242	False	NA	NA	False	NA	NA	NA	128394507	128401831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128394840_128394929_128394985_128395097_128395220_128395299_128395401_128395947_128396141_128399104_128399201_128399447_128399574_128401607
44453	chr18	+	1902	1	NIC	ENSMUSG00000003779.17	novel	3146	19	NA	NA	-242	-47	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAGGAATCACTGACAAC	2179	False	NA	NA	False	NA	NA	NA	34761733	34763635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34761700_34763600
44454	chr9	+	1236	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9078.28326893973	1	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCCTTGTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080710_64082111_64082266_64082483_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085236_64085559
44455	chr8	+	2331	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	49	11	-3	-11	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	384	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAATACAGCAGCCCTC	5243	False	NA	NA	False	NA	NA	NA	125739784	125760920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
44456	chr11	+	1491	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGGACAGTCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654139_120654239
44457	chr12	-	1859	4	NNC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.3986531642978	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008973	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76985513_76986797_76986872_76999942_77000051_77008763
44458	chr17	+	2391	12	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1657	2	1631	-2	3prime_fragment	TRUE	canonical	3	15	junction_6	15.5260378474249	288	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGGCTCGCACCCCGAG	NA	False	NA	NA	False	NA	NA	NA	57184133	57195902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
44460	chr16	-	1354	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	37	39	37	-39	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	1149	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTTTAGGACAGCTGT	NA	False	NA	NA	False	NA	NA	NA	90731965	90722735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
44462	chr12	-	1712	13	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	1	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	368.354298045902	2	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAACGTGTAGAAAA	NA	False	NA	NA	False	NA	NA	NA	87519043	87496705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87496761_87496943_87497487_87497575_87497712_87502426_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
44463	chr10	+	1095	9	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1345.65065581673	4	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2116	False	NA	NA	False	NA	NA	NA	61484394	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502769_61508169_61508213_61509597
44464	chrX	-	4867	6	NNC	ENSMUSG00000046449.16	novel	10891	5	NA	NA	446	2752	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	9.86711710683521	36	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTCTATGAGTATAATGT	NA	False	NA	NA	False	NA	NA	NA	103244277	103124567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_103124709_103126759_103126890_103127461_103131837_103132486_103132613_103143231_103143288_103244238
44465	chr17	-	1751	13	NIC	ENSMUSG00000001524.15	novel	1679	14	NA	NA	19	0	intron_retention	FALSE	canonical	3	150	junction_8	14.8230301295728	3	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATCTACGCGGCTTC	NA	False	NA	NA	False	NA	NA	NA	35984532	35978630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
44466	chr5	+	4966	17	ISM	ENSMUSG00000029174.19	ENSMUST00000119756.6	4760	19	26334	3948	-18687	-3943	internal_fragment	FALSE	canonical	3	216	junction_11	25.8115163250825	2	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAGTATAATAGATGTG	NA	False	NA	NA	False	NA	NA	NA	64414075	64504881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_64414499_64417695_64417786_64420811_64420923_64421668_64421802_64428432_64428525_64432737_64432849_64435258_64435388_64436673_64436761_64439107_64439389_64443287_64443428_64468401_64468588_64473696_64473859_64481793_64481953_64490689_64490935_64492620_64492781_64496904_64497075_64502594
44467	chr7	+	1709	13	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	503.363437289599	61	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	124	False	NA	NA	False	NA	NA	NA	5065193	5082932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180_5082233_5082649
44468	chrX	-	2492	7	NNC	ENSMUSG00000031352.11	novel	2473	7	NA	NA	154	-6	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_6	205.927711156663	168	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAACTTCTTAGAGTGAT	NA	False	NA	NA	False	NA	NA	NA	168103122	168094531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168102778
44469	chr15	+	1746	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-17	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	506.738070626455	1	67	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959430	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961159_78962329_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
44471	chr13	+	6521	3	Intergenic	novelGene_1348	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	2	8	56	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCAGTTATTTGACCAT	NA	False	NA	NA	False	NA	NA	NA	38882769	38889740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_38883550_38883667_38884671_38885002
44472	chr8	+	1897	5	NIC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	-41	-5	intron_retention	FALSE	canonical	3	188	junction_1	296.607906165699	146	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACCCACATGTCTTC	NA	False	NA	NA	False	NA	NA	NA	71819544	71822368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71819723_71819878_71820493_71820602_71820756_71821193_71821948_71822170
44473	chr14	+	1678	4	NIC	ENSMUSG00000035960.15	novel	1239	5	NA	NA	3	-4	intron_retention	FALSE	canonical	3	716	junction_1	224.784341091634	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGCTTGGCTTTCTTTGT	192	False	NA	NA	False	NA	NA	NA	51162437	51164592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_51162487_51162669_51162782_51162973_51163811_51163912
44474	chr3	-	5015	34	FSM	ENSMUSG00000033400.15	ENSMUST00000040603.14	9625	34	41	4569	4	-1517	multi-exon	TRUE	canonical	3	13	junction_28	10.2172903022423	36	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAATTATTGATCTCTT	NA	False	NA	NA	False	NA	NA	NA	116601774	116538216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_116538585_116540028_116540163_116540265_116540354_116544046_116544145_116545633_116545846_116546899_116547013_116548521_116548658_116551887_116552000_116552339_116552566_116562434_116562538_116564988_116565165_116566035_116566170_116566412_116566550_116570177_116570309_116572267_116572403_116572703_116572817_116572904_116573030_116574374_116574526_116574640_116574797_116574891_116574994_116575236_116575401_116576168_116576293_116578101_116578290_116578708_116578849_116580178_116580277_116580367_116580471_116580878_116581003_116581919_116582032_116582174_116582357_116584654_116584859_116585666_116585834_116587260_116587472_116600916_116601067_116601676
44475	chr12	-	1952	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	840	3	840	-3	multi-exon	FALSE	canonical	3	96	junction_1	0	371	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTGATCTTTGTATA	6330	False	NA	NA	False	NA	NA	NA	102724091	102707993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_102709654_102723799
44476	chr14	+	1678	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	82	2	30	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	1	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6621	False	NA	NA	False	NA	NA	NA	76741999	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
44477	chr2	-	2278	9	FSM	ENSMUSG00000041975.18	ENSMUST00000112179.9	2297	9	16	3	5	-3	multi-exon	FALSE	canonical	2	6	junction_5	32.9393381840012	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGCTTTTGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	70885911	70794907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70812198_70812540_70823827_70823920_70848563_70848719_70885714
44478	chr7	-	2705	14	ISM	ENSMUSG00000025507.14	ENSMUST00000106005.9	2900	15	999	-401	-67	-1	3prime_fragment	FALSE	canonical	3	24	junction_13	13.58471121144	3	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTTTGCAGAGATCATT	NA	False	NA	NA	False	NA	NA	NA	141022269	141018026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021735_141022063
44479	chr1	-	1863	3	NNC	ENSMUSG00000058407.13	novel	3472	4	NA	NA	1113	-794	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	458	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGCTTATATAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	38033813	38027517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_38027593_38028491_38029539_38033072
44480	chr16	-	2234	6	NIC	ENSMUSG00000022822.17	novel	5811	30	NA	NA	1542	0	intron_retention	FALSE	canonical	3	13	junction_4	190.501863507946	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	NA	False	NA	NA	NA	20181214	20150052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20176118_20176309_20180931
44481	chrX	-	3003	15	NIC	ENSMUSG00000031109.17	novel	3226	16	NA	NA	4	-44	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	15.3278790950027	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTTCCTGCAGATG	NA	False	NA	NA	False	NA	NA	NA	48377085	48099378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_48100512_48102009_48102058_48102373_48102460_48112003_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
44483	chr19	-	2059	4	NIC	ENSMUSG00000060803.7	novel	821	7	NA	NA	10	0	intron_retention	FALSE	canonical	3	2272	junction_3	898.025983291501	8	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	4087915	4085408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4085662_4085823_4087192_4087289_4087397_4087584
44484	chr19	+	3497	22	FSM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	-371	1117	-371	925	multi-exon	TRUE	canonical	3	56	junction_1	11.2473730871055	105	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAATAAACTATTACAGA	NA	False	NA	NA	False	NA	NA	NA	55241429	55285035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_55242599_55257075_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
44485	chr19	-	3573	17	FSM	ENSMUSG00000006464.10	ENSMUST00000053506.8	5602	17	20	2009	10	1596	multi-exon	FALSE	canonical	2	6	junction_3	3.75832409459323	23	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGGTGCAGAGTGTCCAG	5093	False	NA	NA	False	NA	NA	NA	4956636	4938914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4940787_4941017_4941105_4941680_4941816_4942915_4943050_4944288_4944448_4944989_4945060_4947307_4947467_4947601_4947723_4949227_4949335_4950518_4950651_4952870_4952944_4953041_4953081_4953173_4953221_4953729_4954003_4956012_4956048_4956169_4956247_4956583
44486	chr6	+	3123	4	Antisense	novelGene_ENSMUSG00000030042.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2536	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGCGCGCACGCGATTTC	NA	False	NA	NA	False	NA	NA	NA	82622272	82629855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_82625017_82628416_82628460_82629063_82629148_82629603
44487	chr9	-	3276	8	FSM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	-39	1	-29	-1	multi-exon	FALSE	canonical	3	16	junction_6	8.19407451411428	43	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAGTGTAAATTAAGCAT	NA	False	NA	NA	False	NA	NA	NA	22218973	22188044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807_22216899_22218844
44488	chr2	-	2855	1	FSM	ENSMUSG00000075271.5	ENSMUST00000099994.5	3721	1	-8	874	-8	-874	mono-exon	FALSE	NA	NA	NA	NA	NA	70	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTTACTGTTCATAA	NA	False	NA	NA	False	NA	NA	NA	75812319	75809464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75809500_75812300
44489	chr10	-	3643	26	Antisense	novelGene_ENSMUSG00000035722.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	67	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGCCCCGCCCCCTAAC	9462	False	NA	NA	False	NA	NA	NA	79843002	79832295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79832422_79833440_79833514_79833601_79833697_79833847_79833990_79834077_79834189_79834282_79834357_79834588_79834670_79835212_79835426_79835514_79835650_79836539_79836660_79836753_79836925_79837321_79837554_79837868_79838002_79838342_79838561_79838663_79838882_79838959_79839165_79839627_79839740_79840212_79840385_79840550_79840683_79840785_79840933_79841478_79841613_79841819_79842005_79842077_79842142_79842264_79842543_79842717_79842755_79842967
44490	chr1	+	341	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	124	-51	124	51	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACAGCCC	NA	False	NA	NA	False	NA	NA	NA	127966429	127966770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127966400_127966800
44491	chr2	-	1757	6	NIC	ENSMUSG00000018322.11	novel	1923	7	NA	NA	0	-18	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	238.364930306453	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTTTTCTTCTATACA	5881	False	NA	NA	False	NA	NA	NA	163913089	163895477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_163896428_163896620_163896748_163902758_163902929_163906811_163906965_163908489_163908590_163912832
44492	chr19	+	1161	7	ISM	ENSMUSG00000033478.6	ENSMUST00000036407.6	5951	17	12597	7704	12247	-7704	internal_fragment	FALSE	canonical	3	95	junction_1	13.3218700722617	1	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCGCCGTGTAAGTGTC	479	False	NA	NA	False	NA	NA	NA	57361708	57370314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_57361835_57366980_57367275_57367410_57367608_57369031_57369147_57369503_57369581_57369663_57369857_57370155
44493	chr6	+	1857	4	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	8083	-12	intron_retention	FALSE	canonical	3	779	junction_3	48.3942145302514	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCACTCCTAGTTGCTGT	3102	False	NA	NA	False	NA	NA	NA	125117078	125121704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125117638_125117752_125117843_125117998_125118466_125120963
44494	chr1	-	2572	1	Antisense	novelGene_ENSMUSG00000055013.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTAGCAAAGCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	89822971	89820399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_89820400_89823000
44495	chr6	-	2230	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112586.8	2265	8	30	5	-27	2	multi-exon	FALSE	canonical	2	5	junction_5	14.3099793921613	143	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTTGTGTTTGTGGTG	8681	False	NA	NA	False	NA	NA	NA	122579373	122554755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568220_122573590_122573737_122577016_122577085_122579215
44496	chr4	+	772	2	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGAAGATGCGGCTGTC	NA	False	NA	NA	False	NA	NA	NA	91739991	91740933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91740617_91740786
44497	chr13	+	2982	5	FSM	ENSMUSG00000069237.9	ENSMUST00000099547.4	3664	5	682	0	682	0	multi-exon	FALSE	canonical	3	172	junction_4	10.8972473588517	141	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCAACAGTGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	46823679	46831532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_46823732_46824684_46824806_46827021_46827146_46827728_46827869_46828987
44498	chr18	-	2918	17	FSM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	176	0	111	0	multi-exon	FALSE	canonical	3	685	junction_14	36.0532917186489	274	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGGGTTGCCATGTTGTG	NA	False	NA	NA	False	NA	NA	NA	67582066	67537833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_67538585_67540335_67540531_67542467_67542669_67547147_67547264_67548568_67548680_67554055_67554182_67554277_67554386_67556014_67556169_67558958_67559097_67562050_67562325_67564723_67564849_67567224_67567300_67573251_67573405_67573511_67573616_67575379_67575458_67575820_67575921_67581957
44499	chrX	-	2041	4	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	6039	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	272.471813017216	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTTTTCATTTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	149770929	149766127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766723_149766806_149767564_149768588_149769183_149770834
44503	chr4	-	2028	6	Antisense	novelGene_ENSMUSG00000028979.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGCCTATCACCTTTGAT	NA	False	NA	NA	False	NA	NA	NA	148693259	148687017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_148687046_148687122_148687352_148687446_148687626_148688142_148688271_148690031_148690632_148692395
44504	chr5	-	711	2	FSM	ENSMUSG00000029499.12	ENSMUST00000126882.2	466	2	-70	-175	-3	175	multi-exon	FALSE	canonical	3	476	junction_1	0	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAATAATTGTTTAAG	NA	False	NA	NA	False	NA	NA	NA	110434055	110431214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110431620_110433749
44505	chr8	-	4051	14	Antisense	novelGene_ENSMUSG00000003847.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	8	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCGGCACCTCCTCTCCG	NA	False	NA	NA	False	NA	NA	NA	108095696	108020404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_108020529_108022210_108022265_108051268_108051394_108064923_108064986_108065435_108065999_108071416_108071609_108074296_108074490_108078058_108078231_108082144_108082279_108082398_108082453_108085263_108085396_108088375_108088455_108092808_108092958_108093678
44506	chr1	-	1951	8	FSM	ENSMUSG00000033159.15	ENSMUST00000190679.7	2062	8	108	3	108	0	multi-exon	FALSE	canonical	3	148	junction_4	12.6426553656215	172	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	7014	False	NA	NA	False	NA	NA	NA	75118227	75112414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059
44507	chr9	-	1197	4	ISM	ENSMUSG00000097195.11	ENSMUST00000183045.3	939	5	0	6	0	-1	intron_retention	FALSE	canonical	3	834	junction_1	148.153823965349	11	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAATATTTATTCAATTC	NA	False	NA	NA	False	NA	NA	NA	88404941	88403110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_88403502_88403702_88404029_88404359_88404435_88404536
44508	chr13	+	1608	7	Antisense	novelGene_ENSMUSG00002076824.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	19	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCGCCGCCCGAGCCGC	NA	False	NA	NA	False	NA	NA	NA	74060581	74085823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_74061458_74062605_74062679_74063578_74063690_74066529_74066633_74081042_74081109_74084227_74084392_74085608
44509	chr17	+	2978	16	ISM	ENSMUSG00000002365.11	ENSMUST00000002436.11	3331	18	48796	-2	48773	2	3prime_fragment	FALSE	canonical	3	159	junction_4	26.1248285480817	112	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGATTCCCAAAGTATG	NA	False	NA	NA	False	NA	NA	NA	5940399	5982231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_5940425_5942048_5942175_5949601_5949771_5952638_5952790_5955163_5955249_5958628_5958755_5958856_5958975_5968654_5968786_5970345_5970450_5970844_5970949_5972404_5972483_5974879_5974957_5976346_5976437_5977480_5977596_5978479_5978572_5980844
44510	chr5	+	1808	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	24	1	24	-1	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAGTTTCATACAGACG	NA	False	NA	NA	False	NA	NA	NA	100187867	100216618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
44511	chrX	-	1594	5	NIC	ENSMUSG00000031167.17	novel	1183	7	NA	NA	1	-16	intron_retention	FALSE	canonical	3	764	junction_1	213.533369757516	3	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGCTTCTTTAAAATGT	6563	False	NA	NA	False	NA	NA	NA	8011934	8008726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009569_8009896_8009991_8010086_8010187_8010811_8011312_8011876
44513	chr6	+	1651	6	FSM	ENSMUSG00000030060.15	ENSMUST00000113606.2	1572	6	-94	15	-94	-15	multi-exon	FALSE	canonical	0	0	junction_4	461.093656430014	27	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGCTGGCAAGAGTTCT	3241	False	NA	NA	False	NA	NA	NA	87891193	87913596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
44514	chr7	-	2676	9	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	1	249	intron_retention	FALSE	non_canonical	0	0	junction_1	15.5759229261062	52	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTTGAAACTTCTAAAT	NA	False	NA	NA	False	NA	NA	NA	79974201	79966094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79966287_79966437_79966799_79967200_79967231_79968606_79969090_79969839_79969962_79970049_79970447_79970609_79970930_79971024_79971092_79973497
44515	chr3	+	2695	15	NNC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	220.32949583452	1	141	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATTGGTATAGTGT	NA	False	NA	NA	False	NA	NA	NA	157742336	157772719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758570_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
44516	chr12	+	2013	5	Antisense	novelGene_ENSMUSG00000112008.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGATCAACGGCGGCACG	NA	False	NA	NA	False	NA	NA	NA	76984049	77008978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_76985530_76986203_76986291_76986742_76986864_76999941_77000045_77008756
44517	chr17	+	2079	11	NNC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	55	-301	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	134.099552571961	1	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTAATCCTTTTCTTAAT	NA	False	NA	NA	False	NA	NA	NA	27136201	27151256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27136260_27139770_27139803_27139856_27139906_27139993_27140094_27141649_27141698_27141878_27142277_27142982_27143767_27144425_27144707_27144799_27144874_27145193_27145270_27151077
44518	chr10	-	2798	14	NIC	ENSMUSG00000040462.14	novel	2627	15	NA	NA	-3	-4	intron_retention	FALSE	canonical	3	78	junction_2	41.2699297381485	133	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCAAGCCATCAGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	126957003	126931524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_126932242_126932498_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
44519	chr13	-	1886	6	Intergenic	novelGene_1369	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	2	junction_4	2.92574776766556	59	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTTTCCTCCATAAGGT	8330	False	NA	NA	False	NA	NA	NA	52727272	52708407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_52709757_52709963_52710015_52714215_52714317_52715084_52715256_52717060_52717163_52727160
44520	chr5	+	1072	2	Genic_Genomic	ENSMUSG00000079067.6	novel	279	1	NA	NA	-21	810	multi-exon	FALSE	canonical	0	0	junction_1	0	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTCAATTTATTACATTAA	NA	False	NA	NA	False	NA	NA	NA	84271150	84272260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_84271252_84271289
44521	chr19	-	2323	18	NIC	ENSMUSG00000024833.16	novel	2391	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	120.985772276849	27	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1665	False	NA	NA	False	NA	NA	NA	6014191	5991134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5991581_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
44522	chr18	-	1747	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	447.309456640478	58	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTATCTGTTGCTC	NA	False	NA	NA	False	NA	NA	NA	77855462	77845266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77845454_77846169_77846587_77846744_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
44523	chr2	-	1605	1	NIC	ENSMUSG00000002550.17	novel	2005	7	NA	NA	60	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAATTTGTCCTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	32146621	32145016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32145000_32146600
44524	chr7	-	1685	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	61	-1	1	1	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGATGTGTTTGTCCC	NA	False	NA	NA	False	NA	NA	NA	79765079	79744592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
44525	chr19	+	1889	7	NNC	ENSMUSG00000012443.5	novel	4819	22	NA	NA	-54	-16208	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	128.029618968945	25	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGATATTTATGCTTAAT	NA	False	NA	NA	False	NA	NA	NA	37364796	37378011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37377062
44526	chr8	+	2007	16	NNC	ENSMUSG00000031901.13	novel	758	6	NA	NA	60	-1	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	52.6354337769614	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCCACCTGCTTCAACC	NA	False	NA	NA	False	NA	NA	NA	106738213	106780450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106738434_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
44527	chr11	-	1673	7	NNC	ENSMUSG00000025132.14	novel	2150	6	NA	NA	333	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1586.30486946516	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACACCCCTGAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	120471873	120468955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469663_120469785_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
44528	chr10	+	2303	12	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	-2	-144	intron_retention	FALSE	canonical	3	604	junction_7	38.1172614419597	1	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTCTGCTGTGTTCCTGG	9195	False	NA	NA	False	NA	NA	NA	127102234	127117675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127114092_127114185_127114278_127117269
44529	chr8	-	2277	6	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	54663	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	221.858874061868	1	63	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGTTACTTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	81502850	81491060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492013_81492193_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81502789
44530	chr5	-	1893	9	FSM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	31	244	31	-244	multi-exon	FALSE	canonical	3	95	junction_6	14.9248115565993	346	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCAAGTCTGTTCTTTAT	1558	False	NA	NA	False	NA	NA	NA	137312635	137308159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612_137311739_137311842_137311971_137312221
44532	chr6	+	1970	8	NNC	ENSMUSG00000000439.10	novel	6230	8	NA	NA	10	-4165	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	175.378657394187	6	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTTTTATAAGAAAACCT	NA	False	NA	NA	False	NA	NA	NA	115578872	115595420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588883_115590354_115590503_115591535_115591647_115594258_115594404_115594554
44533	chr2	+	2357	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	32	35	32	-35	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	1	132	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTTTATTTTAATAATAAA	8601	False	NA	NA	False	NA	NA	NA	72306534	72317202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
44535	chr1	+	937	1	Antisense	novelGene_ENSMUSG00000084106.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGCCAACTGGTGATTG	NA	False	NA	NA	False	NA	NA	NA	86836481	86837418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86836500_86837400
44536	chr5	-	1742	11	NNC	ENSMUSG00000029730.17	novel	2962	15	NA	NA	489	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	666.158389574131	1	70	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTGCTTGTTAATAAC	4984	False	NA	NA	False	NA	NA	NA	138167416	138162864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165687_138165806_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359
44537	chr14	+	1815	12	NNC	ENSMUSG00000015971.6	novel	2119	13	NA	NA	464	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	97.7920715405822	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGACACTGATTTGAG	NA	False	NA	NA	False	NA	NA	NA	29704624	29715171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_29704727_29705986_29706120_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
44538	chr3	-	2904	3	FSM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	110	0	110	0	multi-exon	FALSE	canonical	3	25	junction_2	5.5	93	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGGTTTCTCTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	83748964	83743578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_83746097_83748195_83748444_83748826
44539	chr11	-	2140	12	NNC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-26	-1	intron_retention	FALSE	canonical	0	0	junction_10	74.569397485311	11	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTGTTCATGTTGCA	8346	False	NA	NA	False	NA	NA	NA	82799194	82791606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798594_82798917_82799062_82799164
44540	chr2	+	1448	10	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	-107	-709	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1714.00298197588	1	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGTCGTTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	121255003	121268459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121255124_121257075_121257184_121259944_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265340_121266793_121266896_121268066
44541	chr17	+	2619	7	Antisense	novelGene_ENSMUSG00000062012.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	63	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGAGGCTGGGATTAGGG	3801	False	NA	NA	False	NA	NA	NA	23794448	23805210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_23796143_23799091_23799207_23799744_23799839_23800063_23800237_23803783_23803916_23804413_23804547_23804932
44544	chr8	+	245	1	FSM	ENSMUSG00000070025.9	ENSMUST00000145057.2	1005	1	938	-178	938	178	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAAAAAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	58004270	58004515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_58004300_58004500
44545	chr7	+	1418	6	ISM	ENSMUSG00000070837.7	ENSMUST00000207711.2	1320	7	335	0	169	0	3prime_fragment	FALSE	canonical	2	56	junction_5	137.89706305792	57	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	3249	False	NA	NA	False	NA	NA	NA	6998836	7006090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
44546	chr11	+	1404	8	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	-52	-809	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1013.09277936023	17	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTCTGTACATTTT	NA	False	NA	NA	False	NA	NA	NA	97206681	97219937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219059_97219358
44547	chr12	-	1731	8	NIC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	0	-16	intron_retention	FALSE	canonical	3	215	junction_1	41.3481978977047	72	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTGTATAAACTTTTTC	NA	False	NA	NA	False	NA	NA	NA	56392606	56375103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
44548	chr1	+	1551	1	FSM	ENSMUSG00000070960.5	ENSMUST00000095050.5	1513	1	155	-193	155	193	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGATAAATAAACTGAG	NA	False	NA	NA	False	NA	NA	NA	31654384	31655935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_31654400_31655900
44552	chr7	-	1912	11	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-25	-26	intron_retention	FALSE	non_canonical	0	0	junction_1	346.186149347428	8	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTAAGTCAAACCTCAT	NA	False	NA	NA	False	NA	NA	NA	16761759	16738590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16738659_16739188_16739268_16739984_16740164_16740256_16740298_16740831_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
44553	chr7	-	2178	12	NNC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	2	0	intron_retention	FALSE	non_canonical	0	0	junction_2	132.45638608567	1	73	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976591	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125969586_125969906_125970081_125970354_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
44555	chr3	-	2683	7	NIC	ENSMUSG00000074513.10	novel	2799	8	NA	NA	-46	-31	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	66.9421391949794	24	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTTCTTATTAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	84489978	84403430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_84405199_84417114_84417290_84422939_84423098_84434992_84435106_84441893_84442003_84455240_84455343_84489720
44556	chr7	-	3767	8	ISM	ENSMUSG00000030894.6	ENSMUST00000210840.2	3687	12	173	455	52	-455	intron_retention	FALSE	canonical	3	309	junction_7	16.2455645438051	7	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCCTTCCTCTTTCCAG	NA	False	NA	NA	False	NA	NA	NA	105401247	105395580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743
44557	chr7	+	2111	6	NIC	ENSMUSG00000025510.15	novel	1708	8	NA	NA	5	-9	intron_retention	FALSE	canonical	3	214	junction_1	30.2125801612507	409	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATGTAAATGTATAAGC	NA	False	NA	NA	False	NA	NA	NA	141047310	141051367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141050139_141050222_141050382_141050463
44558	chr17	+	2410	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	11	-1348	3	-20	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	24	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATACCATTGCACCCAGC	479	False	NA	NA	False	NA	NA	NA	29487929	29521844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
44559	chr6	+	1808	12	NNC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	-7	-299	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	84.8370338593328	279	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAAGGTTTTTGAGAGA	NA	False	NA	NA	False	NA	NA	NA	115521655	115555290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553824_115553947_115554891
44560	chr3	-	1405	5	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	83	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.925225100195	1	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTATTTTATTATGGT	NA	False	NA	NA	False	NA	NA	NA	90398217	90395673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90396007_90396073_90396901_90397460_90397580_90397854_90397902_90398138
44561	chr8	+	752	1	Intergenic	novelGene_1742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACATTCACATTCACACA	NA	False	NA	NA	False	NA	NA	NA	111756420	111757172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_111756400_111757200
44562	chr1	+	3853	20	FSM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	88	5	88	-5	multi-exon	FALSE	canonical	3	150	junction_2	20.2454468052323	1	147	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGTCCAACTCTCATTT	NA	False	NA	NA	False	NA	NA	NA	163607239	163744673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163743293
44563	chr17	-	3912	4	ISM	ENSMUSG00000024098.7	ENSMUST00000024906.6	4086	5	2418	8	2307	-8	3prime_fragment	FALSE	canonical	3	222	junction_1	26.8369562771605	86	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGAGTCATGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	66255803	66230067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_66233462_66236541_66236809_66244795_66244896_66255652
44564	chr7	-	2140	8	NNC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	12	0	intron_retention	FALSE	canonical	1	3	junction_4	51.8152132730399	8	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	140676640	140671087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140672219_140672293_140672397_140672498_140672643_140672890_140673051_140673112_140673244_140673639_140673839_140674694_140674859_140676532
44565	chr5	-	2610	2	ISM	ENSMUSG00000028959.15	ENSMUST00000139307.2	811	4	558	-98	506	-49	intron_retention	FALSE	canonical	3	1155	junction_1	0	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTCCCACAGCCCCTC	NA	False	NA	NA	False	NA	NA	NA	24649678	24646970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24647082_24647179
44566	chr2	-	1873	4	FSM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	4	-7	4	7	multi-exon	FALSE	canonical	3	33	junction_3	9.0921211313239	271	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGATTTTCTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	118859870	118848252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_118849646_118852549_118852707_118857618_118857869_118859797
44569	chr5	-	2306	10	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	1088	468	intron_retention	FALSE	canonical	3	14	junction_8	728.384988421662	2	91	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACCGTGCTGGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	117525999	117517213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525494_117525759_117525933
44570	chr16	+	1405	6	NIC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	19	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	217.67076055364	28	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	48104116	48114596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48104205_48108240_48108359_48109401_48109569_48111376_48111678_48113273_48113470_48114061
44572	chr11	+	1399	5	NNC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-3	-230	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	218.404870595873	1	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTTTTATTTTTTAAGA	905	False	NA	NA	False	NA	NA	NA	96932417	96939809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96932479_96935353_96935480_96937858_96938021_96938238_96938384_96938904
44573	chr10	+	3712	1	Intergenic	novelGene_3551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGGAGAAGACTGACTT	NA	False	NA	NA	False	NA	NA	NA	120362799	120366511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120362800_120366500
44574	chr11	+	1940	4	NIC	ENSMUSG00000041623.18	novel	2062	5	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_2	111.645271582216	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	113575289	113585473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_113575538_113578599_113580048_113583220_113583329_113585337
44575	chr7	-	2144	17	NIC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-30	-3	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	85.4033627850801	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAACACTGTTTATAGTC	NA	False	NA	NA	False	NA	NA	NA	27055409	27041565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
44576	chr6	+	2490	3	FSM	ENSMUSG00000057278.9	ENSMUST00000203782.3	357	3	15	-2148	-14	-4	multi-exon	FALSE	canonical	3	2623	junction_2	41	11	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGCGTTTCTGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	86348538	86355885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86348597_86352658_86352682_86353476
44577	chr5	+	1751	6	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	7748	junction_1	3619.80267970507	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTGGTGTCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	121342596	121347027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121342616_121343468_121343727_121343816_121344874_121345209_121345259_121346453_121346639_121346844
44578	chr14	-	1442	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	-345	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	1819.95631815711	104	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTATTGTTTTCAGTAAC	NA	False	NA	NA	False	NA	NA	NA	36857252	36842393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36842740_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
44579	chr13	-	1814	1	ISM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	6152	444	2416	-429	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGGCCCAGCGCCTGT	NA	False	NA	NA	False	NA	NA	NA	54829469	54827655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_54827700_54829500
44580	chr4	+	3232	4	NNC	ENSMUSG00000049119.15	novel	618	4	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6.59966329107444	85	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTGTGCTGATTTCTTT	6	True	NA	NA	False	NA	NA	NA	5644178	5801098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_5644411_5678902_5678999_5747096_5747171_5798268
44581	chr10	-	618	1	Antisense	novelGene_ENSMUSG00000110841.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCCTGTACTTATCCA	NA	False	NA	NA	False	NA	NA	NA	45752151	45751533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_45751500_45752200
44582	chr16	-	1847	5	Antisense	novelGene_ENSMUSG00000043065.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGACAGTATTCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	44197305	44187309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_44188110_44190240_44190740_44191040_44191307_44192894_44193027_44197155
44583	chr17	-	354	1	Intergenic	novelGene_254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCCCAGACGCTCACAT	NA	False	NA	NA	False	NA	NA	NA	47094069	47093715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_47093700_47094100
44584	chr1	-	1435	5	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	-10	-555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1925.24991884171	4	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAGTTCTGCAATCTGT	7356	False	NA	NA	False	NA	NA	NA	160040385	160030491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160031337_160033658_160033766_160034182_160034280_160035948_160036166_160040216
44586	chr18	+	4857	25	FSM	ENSMUSG00000034295.11	ENSMUST00000234834.2	4956	25	47	52	47	-52	multi-exon	TRUE	canonical	3	28	junction_12	8.53414302799187	45	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATAAATGTACACTGTGT	NA	False	NA	NA	False	NA	NA	NA	24842548	25266506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_24842831_24887275_24887383_24903539_24903605_25030693_25030762_25036949_25037056_25102216_25102312_25118270_25118383_25123029_25123125_25127472_25127617_25134847_25135090_25161121_25161227_25189316_25189452_25193382_25193434_25199273_25199483_25218390_25218670_25223086_25223965_25234582_25234742_25243111_25243295_25245602_25245723_25246566_25246729_25248755_25248947_25253175_25253369_25258799_25258975_25263589_25263752_25265967
44587	chr17	-	994	7	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-4	-24	intron_retention	FALSE	non_canonical	0	0	junction_1	3733.93302103232	93	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGAAGATGCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	45884185	45878724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878817_45881331_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
44588	chr10	-	1953	12	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	32	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	425.436110711727	3	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTTCCTTTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	85793655	85774508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_85774984_85777762_85777883_85778367_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
44590	chr4	+	1718	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-6888	36614	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	7	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTGTGTCACCACTGCCCA	NA	False	NA	NA	False	NA	NA	NA	145166421	145214072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145167023_145173234_145174312_145214032
44591	chr18	+	3351	17	NNC	ENSMUSG00000025429.10	novel	2267	15	NA	NA	-1005	878	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	9.66873181963384	65	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTGTATTCTTGTGT	1703	False	NA	NA	False	NA	NA	NA	77881239	77971457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77881341_77882004_77882171_77882305_77882451_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
44592	chr2	-	1986	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109298.8	1991	10	5	0	5	0	multi-exon	TRUE	canonical	2	10	junction_9	78.2020175926143	681	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5779	False	NA	NA	False	NA	NA	NA	165129670	165118473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129603
44594	chr16	+	2858	18	NNC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	137.124700149183	3	99	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATTCTCTGGAACAAAGA	NA	False	NA	NA	False	NA	NA	NA	16688678	16710836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_16688763_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709224_16709421_16710278
44596	chr4	+	1979	9	ISM	ENSMUSG00000028274.18	ENSMUST00000029942.8	2379	16	14747	120542	177	22316	internal_fragment	FALSE	canonical	3	221	junction_8	35.599991221909	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATAAGCTAGATGCTAG	NA	False	NA	NA	False	NA	NA	NA	33325074	33380372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368
44597	chr9	+	3481	20	NNC	ENSMUSG00000025240.11	novel	3558	20	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	64.2023722173718	2	109	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGTTGGTACTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	123358890	123421665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415636_123415720_123416609_123416668_123419865
44598	chr12	+	4121	12	NNC	ENSMUSG00000048285.10	novel	4662	14	NA	NA	23	-407	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	55.6519585986672	1	189	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACAGTTTCTCATTTCTG	810	False	NA	NA	False	NA	NA	NA	70872310	70948601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924038_70927392_70927580_70930439_70930630_70934582_70934652_70936705_70936881_70940382_70940717_70941650_70941783_70944115_70944208_70946157
44599	chr1	-	2185	6	NNC	ENSMUSG00000026566.16	novel	2285	6	NA	NA	-2	59	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	298.332968342421	12	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGCAGCTGCACAAGCC	NA	False	NA	NA	False	NA	NA	NA	165462084	165419749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165462016
44600	chr5	-	2953	10	ISM	ENSMUSG00000032867.9	ENSMUST00000049474.9	5000	11	12706	1632	12668	-1632	3prime_fragment	FALSE	canonical	3	339	junction_8	27.5698887453704	133	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAAGGACTCGTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	118280823	118204661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_118206295_118206669_118206781_118208410_118208585_118215641_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732
44601	chr15	-	2777	12	NIC	ENSMUSG00000000934.10	novel	1903	14	NA	NA	2	0	intron_retention	FALSE	canonical	3	74	junction_6	11.1191889828514	4	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	False	NA	NA	False	NA	NA	NA	75550647	75528883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
44602	chr4	+	3084	3	FSM	ENSMUSG00000035649.18	ENSMUST00000147272.8	4251	3	1153	14	1153	-2	multi-exon	FALSE	canonical	3	133	junction_2	10.5	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTGTAAATAAATGTGTT	101	False	NA	NA	False	NA	NA	NA	44924270	44932201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_44926071_44929117_44929236_44931035
44603	chr2	-	1233	1	ISM	ENSMUSG00000038914.16	ENSMUST00000087517.10	8723	16	43152	2	16757	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	48	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTCTCTCTCTTCACT	NA	False	NA	NA	False	NA	NA	NA	180300991	180299758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_180299800_180301000
44604	chr4	-	1718	5	NNC	ENSMUSG00000066000.13	novel	2558	5	NA	NA	-6	-851	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	81.6593534140456	1	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTTTATGAAGAAATATC	NA	False	NA	NA	False	NA	NA	NA	147726976	147697246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699740_147699864_147702869_147702956_147725368_147725463_147726820
44605	chr1	-	1752	4	ISM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	-21	3171	8	0	5prime_fragment	FALSE	canonical	3	2115	junction_1	94.2667609617633	11	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTGCTCAGGTCTTTTG	1628	False	NA	NA	False	NA	NA	NA	4855954	4846599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_4847872_4852790_4852957_4854173_4854329_4855795
44606	chr8	+	1855	7	NNC	ENSMUSG00000006273.15	novel	2825	14	NA	NA	52	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	496.216238706026	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTGAAATGACTCTGTG	NA	False	NA	NA	False	NA	NA	NA	69541492	69566360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69541581_69548871_69548928_69558497_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
44607	chr3	-	2090	1	Antisense	novelGene_ENSMUSG00000015749.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGGCCTGGTCCTGGAGG	1201	False	NA	NA	False	NA	NA	NA	95854673	95852583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95852600_95854700
44608	chr10	+	1784	8	NIC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	-19	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	399.613027100683	2048	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTATCCAGTGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	72490707	72510789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492889_72493018_72493097_72493221_72509797
44609	chr1	+	1835	1	FSM	ENSMUSG00000098923.2	ENSMUST00000183952.2	2824	1	28	961	15	793	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGGTGTTTCTAGTGCT	NA	False	NA	NA	False	NA	NA	NA	119453917	119455752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_119453900_119455800
44610	chr2	+	2323	4	ISM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	109	4	109	-1	intron_retention	FALSE	canonical	3	169	junction_3	8.65383665716478	12	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACAATGGCTTCTAAAAAG	NA	False	NA	NA	False	NA	NA	NA	180352018	180360522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651
44611	chr2	-	3583	19	NNC	ENSMUSG00000034032.16	novel	4546	24	NA	NA	3405	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	138.314780103436	1	170	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGATCTGGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	119607278	119594446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604344_119604594_119604701_119605433_119605533_119605776_119605868_119607146
44612	chr11	-	2090	15	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	248.389917308268	3	96	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	35725329	35699207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700613_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
44613	chrX	-	1140	8	NNC	ENSMUSG00000031167.17	novel	1338	7	NA	NA	6	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	400.461060809275	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGATGAAACCTGAACACA	6505	False	NA	NA	False	NA	NA	NA	8011992	8008623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010112_8010156_8010187_8010811_8010919_8011193_8011312_8011876
44614	chr10	-	1637	7	ISM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	4281	873	4216	-871	3prime_fragment	FALSE	canonical	3	2020	junction_1	56.8235573214725	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	4347	False	NA	NA	False	NA	NA	NA	128397522	128394507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787
44615	chr8	+	2317	17	NNC	ENSMUSG00000031864.17	novel	4201	17	NA	NA	15	130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	221.292227608653	1	92	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGAAAGATTTGAAGTTT	NA	False	NA	NA	False	NA	NA	NA	69246680	69280283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263232_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272024_69273313_69273470_69274808_69274903_69279928
44616	chr16	+	1695	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118310.8	1700	5	7	-2	7	2	multi-exon	FALSE	canonical	3	22	junction_4	45.8768732587564	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGCCTTTGTGTAGCGT	NA	False	NA	NA	False	NA	NA	NA	87151121	87165632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164352
44618	chr16	-	2882	4	NNC	ENSMUSG00000047434.15	novel	3470	4	NA	NA	53090	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	87.2098363463409	127	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGCTACAGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	30827155	30773966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30776553_30826531_30826665_30826905_30827045_30827131
44619	chr1	+	2441	21	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	101	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	199.324383857069	1	114	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	423	False	NA	NA	False	NA	NA	NA	72346686	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364236_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420781_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
44620	chr18	-	3397	19	FSM	ENSMUSG00000033032.16	ENSMUST00000120472.2	3444	19	38	9	-4	-9	multi-exon	FALSE	canonical	1	2	junction_17	8.65740245593045	39	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCTGAGAGGTCAGAGG	NA	False	NA	NA	False	NA	NA	NA	61919735	61863340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870566_61870679_61871754_61871828_61872194_61872341_61874700_61874913_61876348_61876502_61876737_61876832_61879848_61879942_61881766_61881947_61884736_61884949_61885579_61885679_61888633_61888746_61889910_61890006_61890722_61890807_61891670_61891800_61919646
44621	chr11	+	2651	6	FSM	ENSMUSG00000033953.11	ENSMUST00000102880.5	2859	6	209	-1	209	1	multi-exon	FALSE	canonical	3	579	junction_5	55.0962793662149	249	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAATGTATTGTGTCAGC	NA	False	NA	NA	False	NA	NA	NA	17109471	17150376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_17109543_17132106_17132147_17142956_17143134_17144216_17144277_17144668_17144854_17148258
44622	chr1	-	1489	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	60	549	-10	-549	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGCAATCTGTTTTGAG	7356	False	NA	NA	False	NA	NA	NA	160040385	160030485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
44623	chr10	-	1658	5	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	177	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	337.37840402136	3	54	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTTGTTTAGTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	5755423	5749193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749823_5750255_5750436_5751151_5751243_5751939_5752533_5755258
44624	chr17	+	2968	11	FSM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	54	1398	8	-1398	multi-exon	TRUE	canonical	2	12	junction_2	12.6526677028997	61	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTAGTCTTTGAACTCA	NA	False	NA	NA	False	NA	NA	NA	15616517	15652302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_15616823_15622006_15623392_15626016_15626198_15627858_15627961_15634940_15635114_15637894_15637988_15643139_15643347_15644531_15644641_15646450_15646538_15651838_15651891_15652028
44625	chr11	+	2000	11	NNC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	40	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	52.7962119853309	5	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTGTGTGGTTTTCTG	3611	False	NA	NA	False	NA	NA	NA	100973490	100977443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100973517_100973824_100974422_100974457_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
44626	chr14	-	2005	7	FSM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	-43	-4	17	3	multi-exon	FALSE	canonical	3	174	junction_3	17.7333646616265	529	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGCGTCCAAGTGCGG	NA	False	NA	NA	False	NA	NA	NA	69944985	69934752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502
44627	chr2	+	4069	24	FSM	ENSMUSG00000027478.16	ENSMUST00000056495.14	4318	24	249	0	86	0	multi-exon	FALSE	canonical	3	28	junction_1	26.7017412684545	83	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAACGTGCTGTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	153491622	153529646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_153491661_153492704_153492820_153503344_153503523_153504062_153504125_153504633_153504754_153507171_153507298_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514256_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517645_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153525527_153525598_153526278_153526398_153528177
44628	chr16	-	2919	6	NNC	ENSMUSG00000004071.14	novel	3953	6	NA	NA	50	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	196.67292645405	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTATTTTAGACCATG	NA	False	NA	NA	False	NA	NA	NA	4607744	4584703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607239
44631	chr12	-	2952	2	FSM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	0	38	0	-38	multi-exon	FALSE	canonical	3	257	junction_1	0	1	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAGTTTAAAAATCAATAA	9167	False	NA	NA	False	NA	NA	NA	80159787	80154565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80157323_80159592
44633	chr3	-	3053	10	ISM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	24705	2089	6326	543	3prime_fragment	FALSE	canonical	3	432	junction_4	74.939152271759	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTACAATGTATAAATCTCA	NA	False	NA	NA	False	NA	NA	NA	62389720	62377522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_62378169_62378742_62378896_62379419_62379541_62380148_62380240_62380350_62380451_62382690_62382775_62384703_62384791_62384926_62385101_62386740_62386840_62388222
44634	chr7	+	1728	1	Antisense	novelGene_ENSMUSG00000042502.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAAGTTCAAGAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	126791211	126792939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126791200_126792900
44635	chr10	+	2287	9	NNC	ENSMUSG00000020260.10	novel	2290	9	NA	NA	-18	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	63.2949445058608	508	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTTTCAAGAAAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	77095133	77105395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77095288_77096407_77096659_77098270_77098419_77099098_77099210_77100789_77100857_77101669_77101867_77102746_77102928_77102998_77103142_77104360
44636	chr1	-	1400	5	NNC	ENSMUSG00000026202.14	novel	2840	4	NA	NA	-10	57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.340898270459	7	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTCTTGTCCCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	75195897	75192198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75193093_75193164_75193238_75193470_75193620_75193855_75194079_75195836
44637	chr4	+	3200	13	FSM	ENSMUSG00000028759.14	ENSMUST00000165861.8	3361	13	126	35	-11	-13	multi-exon	FALSE	canonical	3	21	junction_1	26.2752524039045	20	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTAAAAGCTGCTGAA	5195	False	NA	NA	False	NA	NA	NA	137944567	137970446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_137944606_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
44638	chr5	-	2511	20	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	0	-196	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	102.633657198931	1	117	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTTAAGGGGGAGCC	NA	False	NA	NA	False	NA	NA	NA	30359974	30324619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340094_30345942_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
44639	chr1	-	1033	4	FSM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	75	1733	-10	132	multi-exon	FALSE	canonical	3	2337	junction_3	156.5907617539	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	NA	NA	NA	180641122	180630129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035
44640	chr15	+	2853	19	ISM	ENSMUSG00000023007.16	ENSMUST00000118287.9	3129	25	2269	0	2269	0	intron_retention	FALSE	canonical	3	106	junction_15	26.8861913247417	1	57	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCTACAACTCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	99203433	99214888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123
44641	chr3	-	1727	9	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	907.454647627087	1	81	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACAAGGCTTCCCCAGTC	NA	False	NA	NA	False	NA	NA	NA	108352475	108333930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341622_108352312
44642	chr19	+	3099	9	NNC	ENSMUSG00000025227.15	novel	2234	6	NA	NA	4651	-21	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	65.4942745589261	2	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTAAAGCCAGTCATTC	955	False	NA	NA	False	NA	NA	NA	46350028	46363670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
44643	chr11	-	776	6	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	69	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7952.27521153538	25	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113003	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104042_33110823_33110922_33111105_33111226_33111547_33111628_33112921
44644	chr11	+	2122	13	NNC	ENSMUSG00000034708.13	novel	2340	13	NA	NA	-41	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.594945777708	2	76	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCGCGTGTGCGTGTGTTG	4293	False	NA	NA	False	NA	NA	NA	102321302	102327587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102321367_102323794_102323936_102324050_102324177_102324311_102324393_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
44645	chr14	+	1371	1	NIC	ENSMUSG00000063787.5	novel	616	3	NA	NA	-7	2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	57	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGTTGGCCATTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	20753118	20754489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20753100_20754500
44646	chr2	+	2926	13	NNC	ENSMUSG00000027298.18	novel	3989	19	NA	NA	-1374	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	77.01713373587	1	196	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATTGAAACATAAA	NA	False	NA	NA	False	NA	NA	NA	119638314	119648557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119638494_119639213_119639360_119639883_119640029_119640385_119640524_119640612_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
44650	chr4	+	1868	14	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	2576	132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	426.978554953914	1	60	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTCTTTTATTCCTAC	NA	False	NA	NA	False	NA	NA	NA	155956647	155973322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970025_155970223_155971254_155971517_155971888_155971979_155972061_155972225_155972311_155972413_155972501_155972567_155972640_155972784_155972852_155972983_155973076
44651	chr1	-	3740	17	NNC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	96	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	20.9872543166084	1	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAATAAACTTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	14374698	14239207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344435_14344757_14344795_14373003_14373122_14374235_14374332_14374648
44652	chr9	-	952	4	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2038	13	30	-13	3prime_fragment	FALSE	canonical	3	11573	junction_3	1892.21686565432	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGAAATCTGTGTTGGT	9138	False	NA	NA	False	NA	NA	NA	78386968	78385743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905
44653	chr7	-	1698	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	-41	5	16	-5	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	495	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTTCCTGCCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	44145871	44139539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
44654	chr7	+	549	4	Antisense	novelGene_ENSMUSG00000064966.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAGAAAGCAAAGTACAT	NA	False	NA	NA	False	NA	NA	NA	99128094	99131000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99128156_99128474_99128676_99129080_99129270_99130902
44655	chr3	-	2251	4	NNC	ENSMUSG00000074513.10	novel	2799	8	NA	NA	63716	-6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	82.3825763671475	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAATCCAGTTGCCCTGT	NA	False	NA	NA	False	NA	NA	NA	84426076	84403405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_84405199_84417114_84417290_84422939_84423098_84425951
44657	chr19	-	937	6	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-19	0	intron_retention	FALSE	canonical	3	1174	junction_5	1038.62948157656	350	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	NA	NA	NA	4092237	4090284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4090540_4090707_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
44658	chr6	+	3032	8	FSM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	43	3155	-16	-3155	multi-exon	FALSE	canonical	2	438	junction_3	36.5396066911353	1035	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGCTTGTGGAGGTCCTC	NA	False	NA	NA	False	NA	NA	NA	115578905	115596430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
44659	chr12	+	2055	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	-11	738	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	287	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGTGTTCACAGAGC	NA	False	NA	NA	False	NA	NA	NA	104214152	104220666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
44661	chr1	-	2099	1	Antisense	novelGene_ENSMUSG00000026123.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGGGGTCTAGAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	34918654	34916555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_34916600_34918700
44662	chr4	-	1501	7	ISM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	5748	0	-4257	0	3prime_fragment	FALSE	canonical	3	194	junction_4	8.78761755097604	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	NA	False	NA	NA	NA	107104981	107090710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490
44663	chr19	+	2455	3	ISM	ENSMUSG00000071657.13	ENSMUST00000171649.8	1962	12	10	5718	10	2722	5prime_fragment	FALSE	canonical	3	57	junction_1	25	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGGCACCTCACAAAGC	NA	False	NA	NA	False	NA	NA	NA	8814840	8820329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8815229_8816939_8817149_8818471
44664	chr8	+	3163	13	NNC	ENSMUSG00000031592.11	novel	6624	38	NA	NA	4	0	intron_retention	TRUE	non_canonical	0	0	junction_3	65.2513835528072	40	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCTTTTGGGAAATGTT	NA	False	NA	NA	False	NA	NA	NA	41692792	41785381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_41693001_41709032_41709148_41710827_41710876_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783842
44668	chr19	-	2574	14	NNC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	-4991	-9	intron_retention	FALSE	canonical	1	1	junction_7	112.40148875596	10	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAACTGATTTTAATCTTT	6975	False	NA	NA	False	NA	NA	NA	6008881	5990578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997896_5998429_5998555_6000473_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845
44669	chr11	+	2124	7	NNC	ENSMUSG00000020873.16	novel	1299	9	NA	NA	-13	-7	intron_retention	FALSE	canonical	0	0	junction_3	121.72053601956	3	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAAGTGCGAGACCCTG	NA	False	NA	NA	False	NA	NA	NA	95275703	95282595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95275940_95276626_95276731_95277336_95277484_95278595_95278754_95279905_95280033_95281103_95281211_95281350
44670	chr5	-	1696	6	Antisense	novelGene_ENSMUSG00000029233.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	44	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCATGAATTTCCACGAC	1655	False	NA	NA	False	NA	NA	NA	76303319	76288596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_76288831_76295532_76295674_76297047_76297083_76297596_76297797_76301369_76301504_76302367
44671	chr2	+	1760	11	NIC	ENSMUSG00000027323.11	novel	3368	10	NA	NA	57	491	combination_of_known_junctions	FALSE	canonical	1	2	junction_9	313.435942418862	1	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGCTAATAAAGTAGTTGT	NA	False	NA	NA	False	NA	NA	NA	118943354	118966180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965362_118965413_118965529
44673	chr9	-	1570	5	FSM	ENSMUSG00000001348.16	ENSMUST00000069330.14	1356	5	-215	1	-199	-1	multi-exon	FALSE	canonical	3	129	junction_4	52.4374627532645	610	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTGTGTCATCAAGGTT	8697	False	NA	NA	False	NA	NA	NA	22043326	22038023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032
44674	chr3	-	1495	9	NNC	ENSMUSG00000038975.15	novel	1271	9	NA	NA	343	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	333.587858554534	2	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	7419	False	NA	NA	False	NA	NA	NA	153617327	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617111
44675	chr9	+	1522	15	NNC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	353.748216985483	11	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCCTTGTTCCTCTGGT	NA	False	NA	NA	False	NA	NA	NA	106354488	106362621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361670_106362267_106362350_106362450
44676	chr14	+	1078	1	Intergenic	novelGene_609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCAAACAATTATTGTGC	NA	False	NA	NA	False	NA	NA	NA	74191350	74192428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_74191400_74192400
44677	chr9	-	1487	5	NNC	ENSMUSG00000086728.3	novel	452	2	NA	NA	2748	10640	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCCGTGGCTCCGTTAT	NA	False	NA	NA	False	NA	NA	NA	57035434	57024749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57024837_57025352_57025445_57026374_57026470_57032450_57032659_57034429
44679	chr12	-	3790	6	NNC	ENSMUSG00000021182.17	novel	7542	30	NA	NA	-658	-136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	62.4583060929449	5	119	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGTGCTGAAGAAGAAAC	9758	False	NA	NA	False	NA	NA	NA	100889804	100877917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100888450_100889102_100889243
44680	chr11	-	2361	7	NIC	ENSMUSG00000039294.15	novel	2417	7	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	17.7709188157381	217	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	NA	False	NA	NA	NA	121120099	121113413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119884
44681	chr8	-	272	2	Antisense	novelGene_ENSMUSG00000034656.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCAGAGGAGAATGCGG	7781	False	NA	NA	False	NA	NA	NA	85328639	85328117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_85328125_85328374
44682	chr3	-	2819	6	ISM	ENSMUSG00000028126.17	ENSMUST00000005768.8	3480	15	40065	6	11802	-6	3prime_fragment	FALSE	canonical	3	47	junction_2	4.45421149026402	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTAAAGTTCTAGCA	5872	False	NA	NA	False	NA	NA	NA	94974025	94965885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122
44683	chr17	+	1194	4	ISM	ENSMUSG00000024151.14	ENSMUST00000173097.8	2502	10	-40	26404	-19	-2562	5prime_fragment	FALSE	canonical	3	1646	junction_2	25.7725090401036	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTGACTATGCATGGCA	4852	False	NA	NA	False	NA	NA	NA	87979948	87990432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958
44684	chr16	+	1661	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-32	-660	-32	660	mono-exon	FALSE	NA	NA	NA	NA	NA	1	81	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATCTACCAA	NA	False	NA	NA	False	NA	NA	NA	24348111	24349772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24349800
44685	chr6	-	3455	16	FSM	ENSMUSG00000029843.5	ENSMUST00000031868.5	3427	16	-32	4	-32	-4	multi-exon	FALSE	canonical	2	6	junction_8	3.05213950460256	43	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTGCAGAGTGAGGTCT	NA	False	NA	NA	False	NA	NA	NA	35285098	35244895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_35245904_35247278_35247417_35248543_35248706_35251850_35251976_35252575_35252674_35253383_35253486_35255171_35255274_35256345_35256466_35257243_35257432_35260173_35260255_35261564_35261605_35264281_35264337_35264688_35264853_35266728_35266866_35278659_35278789_35284292
44686	chr10	+	1281	12	NIC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	75	9	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	204.658958406903	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTTTGTAAAATGTATTA	1083	False	NA	NA	False	NA	NA	NA	127851139	127865861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127851221_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
44687	chr10	-	511	4	NNC	ENSMUSG00000025353.6	novel	724	4	NA	NA	12	-48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	306.352012488176	1	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCTATCTAAACTCCAA	NA	False	NA	NA	False	NA	NA	NA	128657448	128654639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128654857_128655893_128655975_128656129_128656305_128657410
44689	chr9	+	2289	15	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	10	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	132.448603816957	1	78	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCAAGTTGTGGGGGT	NA	False	NA	NA	False	NA	NA	NA	114230185	114303434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259568_114263468_114263528_114266806_114266910_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
44690	chr7	+	1508	11	NNC	ENSMUSG00000015165.17	novel	1898	13	NA	NA	545	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1767.3907887052	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	NA	False	NA	NA	NA	28513347	28521674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517971_28518231_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
44691	chr2	-	2681	12	NIC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	0	-1149	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	13.1840123565697	137	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATATTACTCTTTTTGTT	9034	False	NA	NA	False	NA	NA	NA	13549474	13514973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13529761_13529809_13530428_13530506_13538194_13538305_13549379
44693	chr13	+	3279	10	NNC	ENSMUSG00000093930.3	novel	3245	10	NA	NA	26	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	212.784943308415	1	161	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCAGCTCTTTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	120151940	120169616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166714_120166883_120167048_120167924
44694	chr12	+	1794	10	Antisense	novelGene_ENSMUSG00000020664.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCCATATGGTAATAATGA	NA	False	NA	NA	False	NA	NA	NA	31381608	31392775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_31382242_31382337_31382427_31383422_31383561_31383864_31384056_31384611_31384783_31385464_31385655_31390277_31390381_31390862_31391003_31391372_31391480_31392743
44695	chr6	+	3619	1	ISM	ENSMUSG00000038538.18	ENSMUST00000160583.8	14644	17	75181	14	18127	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	70	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGTAAATATTACTCTGT	NA	False	NA	NA	False	NA	NA	NA	38486065	38489684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_38486100_38489700
44696	chr15	+	2181	8	FSM	ENSMUSG00000037353.10	ENSMUST00000230294.2	2266	8	86	-1	6	0	multi-exon	FALSE	canonical	3	29	junction_2	31.1808418417333	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2433	False	NA	NA	False	NA	NA	NA	100367001	100377045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100367020_100367565_100367718_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
44697	chr11	-	2742	1	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	3841	17	2553	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	159	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	2418	False	NA	NA	False	NA	NA	NA	96710998	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_96708300_96711000
44698	chr19	+	3596	1	FSM	ENSMUSG00000053536.8	ENSMUST00000066039.8	4233	1	151	486	151	-486	mono-exon	FALSE	NA	NA	NA	NA	NA	193	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTAAGGTATTTTGTA	NA	False	NA	NA	False	NA	NA	NA	31060387	31063983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_31060400_31064000
44699	chr7	-	2729	19	FSM	ENSMUSG00000007783.11	ENSMUST00000063761.8	2793	19	65	-1	-8	0	multi-exon	FALSE	canonical	3	39	junction_13	17.8819862459058	102	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACTGTGCTTTTCTGCGG	2729	False	NA	NA	False	NA	NA	NA	44624210	44608795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622574_44623150_44623305_44624018
44700	chr13	+	2116	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	-9	4	-2	4	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	328	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATTGTTCTTTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	108295262	108331515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
44701	chr5	-	2638	14	NNC	ENSMUSG00000001847.15	novel	4159	6	NA	NA	13417	38955	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCTCCCACCGCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	143489946	143450433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143450530_143452705_143452858_143460365_143460625_143464164_143464287_143467379_143467510_143469974_143470106_143472900_143472985_143475679_143475758_143479910_143479993_143480295_143480422_143486721_143486792_143486877_143486951_143488614_143488862_143488958
44702	chr3	-	1062	7	NIC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	0	-2	combination_of_known_splicesites	FALSE	canonical	3	12	junction_5	686.660376184779	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGGTCTTAGTCTTGG	7190	False	NA	NA	False	NA	NA	NA	89906004	89902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905108_89905311_89905834
44703	chr1	+	3742	11	NIC	ENSMUSG00000033964.13	novel	3803	11	NA	NA	-48	-842	intron_retention	TRUE	canonical	3	36	junction_4	7.92464510246358	24	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCTAATTGAGTATATC	NA	False	NA	NA	False	NA	NA	NA	139349977	139376079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_139350065_139350771_139352006_139356863_139357072_139358018_139358089_139359666_139359815_139365178_139365309_139366695_139366792_139368082_139368190_139369500_139369607_139370546_139370636_139374612
44704	chr8	+	2048	9	FSM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	625	127	0	-127	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	169	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTTGTGTAGTAGCAT	NA	False	NA	NA	False	NA	NA	NA	71941371	71945917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
44705	chr19	+	2701	5	FSM	ENSMUSG00000048832.10	ENSMUST00000087951.7	2686	5	-13	-2	3	1	multi-exon	TRUE	canonical	3	85	junction_1	17.2699160391705	119	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTCCATGATGAGTT	NA	False	NA	NA	False	NA	NA	NA	10666101	10691992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10666344_10683573_10683673_10687633_10687806_10688634_10688718_10689887
44706	chr12	-	1391	9	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_8	74.9615526453395	309	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7686	False	NA	NA	False	NA	NA	NA	110807347	110774231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
44708	chr8	-	1528	5	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	17703	-712	273	712	3prime_fragment	FALSE	canonical	0	0	junction_4	39.219733553404	56	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	NA	NA	NA	122653940	122642152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505_122650602_122653821
44710	chr1	-	2866	15	FSM	ENSMUSG00000026409.15	ENSMUST00000169659.8	2849	15	-1	-16	-1	16	multi-exon	FALSE	canonical	3	18	junction_5	4.50679758695639	34	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAAGCTAAGTTTTTACA	3954	False	NA	NA	False	NA	NA	NA	130643516	130624391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_130625823_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202_130642314_130643457
44711	chr11	-	2271	9	NIC	ENSMUSG00000018566.15	novel	1776	10	NA	NA	-5	-45	intron_retention	FALSE	canonical	3	17	junction_5	1.98431348329844	10	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAGTCTTCTAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	69839006	69834662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
44714	chr2	-	3088	2	FSM	ENSMUSG00000109865.2	ENSMUST00000129505.2	559	2	-2405	-124	-525	-2	multi-exon	FALSE	canonical	3	1115	junction_1	0	7	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	4501	False	NA	NA	False	NA	NA	NA	3493604	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_3490107_3490734
44715	chr4	-	2231	6	Antisense	novelGene_ENSMUSG00000028221.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	223	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCACAAGGCAGGAGGCG	NA	False	NA	NA	False	NA	NA	NA	14915265	14864218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_14864436_14886531_14886678_14892388_14892497_14893497_14893622_14912428_14912523_14913723
44716	chr10	-	2889	10	NNC	ENSMUSG00000055531.13	novel	3819	9	NA	NA	0	-340	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	286.691859358131	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTTTGTACATTAAT	4516	False	NA	NA	False	NA	NA	NA	117212833	117190049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117191758_117191839_117192033_117194897_117195052_117196350_117196461_117196760_117196857_117198014_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
44717	chr11	+	2713	1	NIC	ENSMUSG00000020407.14	novel	1277	9	NA	NA	639	2465	mono-exon	FALSE	NA	NA	NA	NA	NA	51	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTGCAAATGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	9069425	9072138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_9069400_9072100
44718	chr19	-	1380	12	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	5723	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1310.18024121218	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	9486	False	NA	NA	False	NA	NA	NA	7011612	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998138_6998354_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009858_7010018_7011530
44719	chr12	+	3030	3	FSM	ENSMUSG00000097929.10	ENSMUST00000180458.9	3282	3	250	2	-149	0	multi-exon	FALSE	canonical	3	14	junction_1	9	106	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATTTTATCTAATTTA	NA	False	NA	NA	False	NA	NA	NA	105303102	105350189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105303217_105303488_105303819_105347603
44720	chr14	+	1956	13	NNC	ENSMUSG00000015971.6	novel	2119	13	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	93.780180327307	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGACACTGATTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	29700372	29715173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_29700465_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
44721	chr1	+	2708	3	NNC	ENSMUSG00000010290.8	novel	3458	4	NA	NA	42	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	105.5	6	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATCTTGAGCAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	43137911	43155101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_43138023_43139874_43139977_43152606
44722	chr18	+	3944	4	NNC	ENSMUSG00000024544.10	novel	3031	6	NA	NA	37714	31587	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	289	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGACCCTCCGTGCCCGCT	719	False	NA	NA	False	NA	NA	NA	68398851	68433288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68402024_68405633_68405746_68408832_68409344_68433139
44723	chr4	-	1894	13	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	-5728	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	540.37147716486	3	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	129428520	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416891_129418038_129418114_129422719_129422838_129428406
44725	chr2	+	2481	3	FSM	ENSMUSG00000036992.11	ENSMUST00000109961.8	1116	3	48	-1413	23	1413	multi-exon	FALSE	canonical	3	22	junction_1	28	1030	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAATCTTCATTTGTAG	NA	False	NA	NA	False	NA	NA	NA	148514568	148519360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_148514756_148516383_148516519_148517201
44726	chr14	-	1605	3	FSM	ENSMUSG00000021811.8	ENSMUST00000223889.2	781	3	-454	-370	21	-222	multi-exon	FALSE	canonical	3	896	junction_2	83.5	1255	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGGTGGATTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	20438923	20434927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20435547_20435867_20435955_20438024
44727	chr17	+	1689	5	NNC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	-6	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1138.05459007905	3	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313410	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37313632_37314177_37314208_37315688_37315796_37316941_37317087_37320318
44729	chr11	+	2152	11	NIC	ENSMUSG00000056938.17	novel	2075	11	NA	NA	17	-2	intron_retention	FALSE	canonical	3	19	junction_2	40.6811995889993	196	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGTCTGCTGTCTGGGA	NA	False	NA	NA	False	NA	NA	NA	102992568	103003021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102992615_102993507_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
44732	chr16	-	2216	14	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	-2	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	208.490772857851	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATATTCTTATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30406383	30380186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30380681_30383463_30383638_30384272_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390341_30392010_30392188_30393363_30393402_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
44733	chr7	+	1675	13	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-48	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	503.363437289599	45	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTTTATGGATCCTCAT	126	False	NA	NA	False	NA	NA	NA	5065195	5082928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180_5082213_5082657
44734	chr14	+	1292	8	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-4	-11	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	429.131348523636	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTAATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	8348825	8357578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8348988_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
44735	chr13	+	2986	7	FSM	ENSMUSG00000069255.14	ENSMUST00000095914.7	3015	7	15	14	15	-14	multi-exon	FALSE	canonical	3	22	junction_6	5.61001089323561	21	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCAAGCCTGACATCAT	NA	False	NA	NA	False	NA	NA	NA	30844098	30895200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659
44736	chr16	+	2171	19	Antisense	novelGene_ENSMUSG00000022685.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	97	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGCAGAGAAACCAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	13380566	13485475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_13381309_13384435_13384603_13420891_13420965_13424009_13424099_13425114_13425169_13443370_13443439_13443973_13444089_13446237_13446324_13449358_13449444_13458125_13458198_13465114_13465163_13466281_13466385_13469644_13469699_13470506_13470581_13472317_13472369_13482536_13482601_13482684_13482753_13483765_13483840_13485391
44737	chr2	+	1980	13	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	74	11122	74	-5499	5prime_fragment	FALSE	canonical	3	30	junction_9	6.72629582724069	1	55	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGTTTTGAGCCCAGAT	NA	False	NA	NA	False	NA	NA	NA	25318788	25327430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_25318848_25322007_25322102_25323109_25323222_25323305_25323470_25323693_25323822_25323975_25324087_25324320_25324540_25324901_25325270_25325510_25325671_25326379_25326509_25326600_25326766_25326841_25326939_25327256
44738	chr8	+	1333	1	NIC	ENSMUSG00000003037.17	novel	4550	8	NA	NA	14963	1597	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGGACAAAAAATTGGTGA	NA	False	NA	NA	False	NA	NA	NA	72930165	72931498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72930200_72931500
44739	chr9	-	2909	6	FSM	ENSMUSG00000043587.16	ENSMUST00000078478.8	2908	6	0	-1	0	1	multi-exon	FALSE	canonical	3	26	junction_2	3.9293765408777	58	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTACAGCTTACGGTGT	NA	False	NA	NA	False	NA	NA	NA	96771482	96705395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96771411
44740	chr4	-	2148	6	FSM	ENSMUSG00000041193.16	ENSMUST00000030524.14	2131	6	-22	5	-9	-5	multi-exon	FALSE	canonical	3	70	junction_2	8.52291030106501	204	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGAATTCACATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	138590802	138526564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310_138546427_138590480
44742	chr1	+	2164	4	NNC	ENSMUSG00000042207.18	novel	8714	27	NA	NA	4463	1358	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	403.661849682242	2	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCAGTGGTCTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	134555000	134560618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134555115_134556335_134556491_134558170_134558492_134559044
44743	chr6	+	1538	1	NIC	ENSMUSG00000029777.11	novel	2380	17	NA	NA	23832	-4036	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCGAGAGGGAGATGAACA	NA	False	NA	NA	False	NA	NA	NA	55050911	55052449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_55050900_55052400
44744	chr15	+	1513	4	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	286	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	635.924698547102	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAAGTGATGAAGTTG	NA	False	NA	NA	False	NA	NA	NA	100513515	100518610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100515924_100517424
44746	chr7	-	2690	16	NIC	ENSMUSG00000007833.16	novel	3537	17	NA	NA	12	-10	intron_retention	FALSE	canonical	3	349	junction_14	42.446620072222	4	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAACTGTGCATTTGAGGA	9352	False	NA	NA	False	NA	NA	NA	44803978	44791268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
44748	chr18	-	4293	3	FSM	ENSMUSG00000024565.11	ENSMUST00000235746.2	4254	3	2235	-2274	2235	-636	multi-exon	FALSE	canonical	3	26	junction_2	11.5	56	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTCCTATTATTTCT	NA	False	NA	NA	False	NA	NA	NA	81016011	81010226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_81013120_81014395_81014737_81014952
44749	chr6	-	2745	1	NIC	ENSMUSG00000029826.15	novel	3400	9	NA	NA	46	-36145	mono-exon	FALSE	NA	NA	NA	NA	NA	28	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCAGTGTTTTATGTTAA	9710	False	NA	NA	False	NA	NA	NA	38331492	38328747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_38328700_38331500
44750	chr19	+	1675	1	Intergenic	novelGene_1264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	79	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGTCTACATACAGAT	NA	False	NA	NA	False	NA	NA	NA	41513733	41515408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41513700_41515400
44751	chr1	-	2653	3	FSM	ENSMUSG00000025956.11	ENSMUST00000053469.2	2666	3	12	1	12	-1	multi-exon	FALSE	canonical	3	51	junction_1	2	157	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGTACCTGTCAGTGTT	NA	False	NA	NA	False	NA	NA	NA	64656315	64645639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_64647297_64654256_64654369_64655431
44752	chr13	+	3233	5	NNC	ENSMUSG00000113566.2	novel	886	4	NA	NA	-10	2176	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	236.283066469013	1	137	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGCTTGCTATGCAATGT	NA	False	NA	NA	False	NA	NA	NA	62245573	62262037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62245653_62246347_62246443_62254561_62254689_62254881_62254943_62259166
44754	chr16	-	2645	24	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	108	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGTCTGACCGGAAACT	NA	False	NA	NA	False	NA	NA	NA	48451144	48251669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48251746_48266644_48266747_48269671_48269754_48270360_48270467_48272791_48272941_48281040_48281149_48300190_48300321_48319116_48319189_48320455_48320511_48322651_48322721_48330551_48330702_48334950_48335106_48378737_48378860_48381896_48382004_48385939_48386078_48402777_48402846_48407253_48407499_48432648_48432723_48436053_48436125_48438865_48439028_48442936_48443013_48444650_48444705_48447272_48447470_48451067
44755	chr11	+	2002	12	NNC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	9	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	404.576178608579	145	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCAGACCCTGGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	101207047	101214357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617_101213080_101213726
44756	chr13	+	2193	6	NIC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	1274	junction_1	98.7048124459998	50	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGTCACATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	43551857	43555468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_43552135_43552210_43552272_43552986_43554411_43554772_43554895_43554975_43555054_43555237
44758	chr2	+	1424	10	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_8	546.932252558659	1830	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	NA	False	NA	NA	NA	151336202	151353225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352674_151352725_151352826
44759	chr7	-	3128	6	FSM	ENSMUSG00000074272.11	ENSMUST00000206687.2	1061	6	-80	-1987	-11	1	multi-exon	FALSE	canonical	3	9	junction_2	9.62081077664455	37	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACTTTGTGGGGTTTTCT	2837	False	NA	NA	False	NA	NA	NA	25177039	25161130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_25163326_25164273_25164306_25165741_25165863_25171222_25171499_25175768_25176129_25176895
44760	chr2	+	3051	13	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-1	-31	intron_retention	FALSE	canonical	3	502	junction_10	50.4090903398275	1	147	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGTAAATAAAGTACACAAG	NA	False	NA	NA	False	NA	NA	NA	174257642	174269264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265942_174266398_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
44764	chr4	+	1743	17	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_16	59.4809580874417	33	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTATGTGTGTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	116664948	116675968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116675766
44765	chr15	-	1116	7	NIC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	1	-25	intron_retention	FALSE	canonical	3	2715	junction_4	260.292570432239	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCTGAGATTAAAGACTGA	NA	False	NA	NA	False	NA	NA	NA	75781145	75767365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75767441_75767580_75767776_75768091_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
44766	chr11	-	1641	7	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	138.080894164737	28	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATCTGCGGTGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	77775381	77771444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77772081_77772326_77772470_77772943_77773119_77773442_77773590_77773954_77774138_77774604_77774819_77775238
44767	chr3	-	2764	23	Antisense	novelGene_ENSMUSG00000105395.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGGCGGACGCCCACCC	NA	False	NA	NA	False	NA	NA	NA	95402897	95341719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95341871_95355680_95355794_95359894_95359939_95367685_95367731_95374101_95374146_95377484_95377699_95381846_95382056_95383380_95383492_95387503_95387570_95388062_95388149_95391080_95391158_95392167_95392303_95394557_95394632_95395662_95395818_95396902_95397012_95397189_95397266_95397563_95397684_95397857_95397965_95398331_95398480_95400841_95400905_95401005_95401167_95401752_95401924_95402612
44769	chr19	-	2908	11	NNC	ENSMUSG00000024781.17	novel	2969	10	NA	NA	6	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.3495318269968	139	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTGAACATCGGTGTGGT	5921	False	NA	NA	False	NA	NA	NA	34504868	34469723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_34471340_34471388_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821_34500940_34502137_34502247_34504765
44770	chr7	+	2805	6	NIC	ENSMUSG00000042606.10	novel	2766	7	NA	NA	9	-49	intron_retention	FALSE	canonical	3	200	junction_2	32.121021154378	306	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGTATGCCTAGCATGAA	1485	False	NA	NA	False	NA	NA	NA	126461152	126464500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126461689_126461771_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
44771	chr17	+	2645	1	ISM	ENSMUSG00000034377.11	ENSMUST00000149756.8	8784	14	129556	1537	3795	-1537	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGATTTATTTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	6286721	6289366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_6286700_6289400
44772	chr16	-	2935	5	ISM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	47649	1587	12307	-1587	3prime_fragment	FALSE	canonical	3	195	junction_1	32.2906720276925	1	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTGAAAGACAATTGTAT	NA	False	NA	NA	False	NA	NA	NA	31850511	31836694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_31839085_31840591_31840730_31841906_31842104_31846529_31846630_31850401
44773	chr11	+	3606	25	NNC	ENSMUSG00000020782.19	novel	847	7	NA	NA	698	-22	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_22	215.276372755272	1	111	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTTTCGTCTTCACT	NA	False	NA	NA	False	NA	NA	NA	115723491	115746582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115723745_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745885_115745932_115746017_115746080_115746291
44774	chr9	+	2441	7	Intergenic	novelGene_1081	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTGGGGCACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	58127772	58154649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58128120_58129000_58129152_58136640_58136691_58137110_58137914_58140437_58140531_58141635_58142241_58154257
44775	chr3	-	1850	1	NIC	ENSMUSG00000054414.5	novel	1326	2	NA	NA	2165	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	11	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAATTTCTGTGTAAAAG	NA	False	NA	NA	False	NA	NA	NA	115734493	115732643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_115732600_115734500
44776	chr4	-	3305	19	NIC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	515	0	intron_retention	FALSE	canonical	3	72	junction_12	72.017744726946	6	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	7940	False	NA	NA	False	NA	NA	NA	155753135	155739138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155742218_155742311_155742417_155743350_155743459_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
44777	chr11	+	2063	14	FSM	ENSMUSG00000025372.17	ENSMUST00000026436.10	2394	14	329	2	-24	-2	multi-exon	FALSE	canonical	3	19	junction_13	8.07215976759687	164	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTAGTGTGTGGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	119833917	119897606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119897184
44778	chr8	+	1876	8	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	-7	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	90.2784807228869	29	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTATCAGTGTATTTG	NA	False	NA	NA	False	NA	NA	NA	47070469	47092716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953_47091966_47092538
44779	chr1	-	2789	19	NNC	ENSMUSG00000026198.16	novel	2966	19	NA	NA	-4	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	48.6028564419931	1	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCGCAAGGACGGCTGT	NA	False	NA	NA	False	NA	NA	NA	75157024	75148372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75154070_75154131_75154308_75154411_75154594_75154747_75155574_75155713_75156213
44781	chr6	+	2321	17	NNC	ENSMUSG00000025609.16	novel	11395	18	NA	NA	-11751	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	206.162244588455	1	105	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATTTAATTATGTAT	NA	False	NA	NA	False	NA	NA	NA	31395865	31484893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31435999_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473600_31473707_31476821_31476877_31484559
44782	chr4	+	2971	14	NNC	ENSMUSG00000028542.18	novel	3479	14	NA	NA	5	-98	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	29.5774982438824	1	93	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCCTCTGTAGCAATAAC	NA	False	NA	NA	False	NA	NA	NA	117692639	117726395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721028_117721125_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
44783	chr2	+	2781	3	Antisense	novelGene_ENSMUSG00000017670.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	60	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATGGAGTGCGGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	165131710	165136606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165132973_165133029_165134102_165136159
44784	chr3	-	1339	8	NNC	ENSMUSG00000027835.12	novel	1927	8	NA	NA	2	290	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	512.303322141826	9	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGAATTCCTATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	75464116	75424292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75424909_75428008_75428092_75428337_75428424_75434946_75435022_75436116_75436235_75440847_75440902_75448466_75448686_75464028
44785	chr17	-	1881	3	Antisense	novelGene_ENSMUSG00000067722.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCACGCTGAGGCGCACCG	2638	False	NA	NA	False	NA	NA	NA	25405568	25403570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_25403614_25403692_25403886_25403923
44787	chr15	+	1951	11	Antisense	novelGene_ENSMUSG00000063354.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCTAGCTCCAAGACCTC	NA	False	NA	NA	False	NA	NA	NA	76496590	76501070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_76496864_76496954_76497138_76497398_76497559_76497658_76497710_76497795_76497920_76497988_76498144_76498254_76498432_76498688_76498859_76498949_76499114_76499243_76499442_76500774
44788	chr6	-	2706	2	Intergenic	novelGene_4203	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	79	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACACTGAAGATTTATTAG	NA	False	NA	NA	False	NA	NA	NA	88670419	88644036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_88646658_88670334
44789	chr2	-	748	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	108	4	-17	-4	multi-exon	FALSE	canonical	3	2071	junction_1	68	10909	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGTTTGAGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148717388	148713645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_148713964_148714736_148714851_148717072
44790	chr6	+	1603	5	FSM	ENSMUSG00000030120.15	ENSMUST00000203060.2	593	5	-176	-834	-176	-17	multi-exon	FALSE	canonical	3	3577	junction_1	125.631405309341	2	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAGAATGGAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	124909410	124913090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195
44791	chrX	+	1556	6	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	11	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	751.60777005031	2	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCAACCTGTTGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	74557933	74578536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560692_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
44792	chr6	+	2301	7	NIC	ENSMUSG00000030327.9	novel	2476	8	NA	NA	-6	-24	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	203.737917160476	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTAATTAAAGATATTTAAA	857	False	NA	NA	False	NA	NA	NA	122851501	122865876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_122851623_122857371_122857473_122857616_122857722_122859226_122859336_122859772_122859957_122863710_122863814_122864298
44794	chr2	+	1536	10	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	10	-7	intron_retention	FALSE	canonical	3	66	junction_2	270.133209023408	805	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCAAGCAAAAGAAGACTTG	1946	False	NA	NA	False	NA	NA	NA	5850073	5873540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871043_5871219_5872899
44795	chr10	+	3303	16	ISM	ENSMUSG00000020015.11	ENSMUST00000069965.9	3615	17	47281	2	-129	-2	3prime_fragment	FALSE	canonical	3	213	junction_15	20.9998941796276	79	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGATTTTTGTGGAGTC	NA	False	NA	NA	False	NA	NA	NA	93044032	93077188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_93044181_93047772_93047938_93052204_93052339_93053825_93053952_93057448_93057506_93060797_93060913_93061885_93061981_93062574_93062638_93064506_93064631_93068241_93068363_93071299_93071398_93071888_93071995_93072782_93072826_93073655_93073747_93074827_93074906_93075449
44796	chr5	-	1524	12	NNC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	7	-174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	200.081388398499	4	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTTGGTTTTTTAG	8848	False	NA	NA	False	NA	NA	NA	110801276	110796457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110796850_110796931_110797046_110797197_110797275_110798231_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
44797	chr6	+	2586	15	NNC	ENSMUSG00000052337.16	novel	2299	15	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	614.1601408195	1	126	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTACTCTATCCCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	71808360	71852240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830158_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845558_71845788_71848410_71848543_71849777_71849908_71851300_71851647_71851713
44798	chr17	+	2091	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	-66	0	-45	0	multi-exon	FALSE	canonical	3	220	junction_6	33.8230690505755	1	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9178	False	NA	NA	False	NA	NA	NA	57071711	57076841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
44799	chr15	-	1825	6	NIC	ENSMUSG00000023755.11	novel	1604	8	NA	NA	-40	-6	intron_retention	FALSE	canonical	3	177	junction_1	15.509996776273	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGACGTTTGTGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	98779255	98775664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98776179_98776333_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
44801	chr2	+	3129	10	FSM	ENSMUSG00000002103.17	ENSMUST00000124131.2	3124	10	-10	5	2	-5	multi-exon	FALSE	canonical	3	45	junction_6	11.063230167017	65	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGATACCACTGTCTCCA	5062	False	NA	NA	False	NA	NA	NA	91033258	91042482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
44802	chr2	-	2632	9	NIC	ENSMUSG00000027233.5	novel	2434	18	NA	NA	60064	-26	intron_retention	FALSE	canonical	3	37	junction_8	24.456274757207	20	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAAAGTCTAATCTGGG	NA	False	NA	NA	False	NA	NA	NA	121956606	121950614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199_121956354_121956581
44803	chr2	-	1996	15	NNC	ENSMUSG00000027423.16	novel	2512	14	NA	NA	28	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	363.077267314846	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAACAAAGTCTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	144112676	144092051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_144092750_144093106_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
44804	chr5	-	1382	3	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	42	-52	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	839	8	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGATCAGCCCGGAGAG	NA	False	NA	NA	False	NA	NA	NA	36954074	36952262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36953289_36953546_36953596_36953767
44806	chr11	+	3110	5	Antisense	novelGene_ENSMUSG00000119469.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	31	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCAGAGCGCGCGGAGGT	1553	False	NA	NA	False	NA	NA	NA	82871974	82910914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_82872324_82894226_82895607_82904190_82904328_82907480_82908548_82910737
44807	chr14	-	1900	3	NIC	ENSMUSG00000042354.8	novel	1765	15	NA	NA	-384	-12	intron_retention	FALSE	canonical	3	862	junction_2	109.5	1	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTGCTTGCATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	30736647	30734402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30734592_30734679_30735753_30736009
44808	chr4	+	2138	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	34	388	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	672.814920068414	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAAACTGAATTTAGCGT	4740	False	NA	NA	False	NA	NA	NA	135583476	135596081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350_135590514_135590833_135590888_135594436_135595317_135595376
44809	chr19	+	1659	13	NNC	ENSMUSG00000024949.18	novel	4353	13	NA	NA	71	239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	437.192010639109	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATATTATATACATAGA	946	False	NA	NA	False	NA	NA	NA	6414063	6426049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424060_6424314_6424578_6424639_6424748_6424781_6425857
44810	chr7	-	3905	7	FSM	ENSMUSG00000034825.15	ENSMUST00000033331.7	3910	7	1	4	1	-4	multi-exon	FALSE	canonical	2	8	junction_6	3.54338193757822	22	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTGTGCTTGTCTGAG	NA	False	NA	NA	False	NA	NA	NA	109380751	109357269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_109360397_109360853_109360949_109361027_109361081_109362690_109362831_109364672_109364756_109365679_109365842_109380506
44812	chr11	+	3110	6	NIC	ENSMUSG00000049811.18	novel	2034	5	NA	NA	92	-2	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	6.41872261435249	15	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGTTTGGTTGGTAATT	NA	False	NA	NA	False	NA	NA	NA	22958556	22980786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22958627_22965654_22965885_22969999_22971134_22973429_22973530_22978855_22979011_22979365
44813	chr11	+	3182	11	ISM	ENSMUSG00000006169.21	ENSMUST00000109261.11	3452	12	31787	0	1354	0	3prime_fragment	FALSE	canonical	3	124	junction_9	118.307058115735	216	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGCCCGCCTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	45774577	45801452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798666_45798872_45799767
44814	chr8	+	1592	2	Antisense	novelGene_ENSMUSG00000037070.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	50	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCGTCTGCCGCCGCCGCT	5965	False	NA	NA	False	NA	NA	NA	79231897	79235482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_79233462_79235454
44815	chr4	+	847	1	Antisense	novelGene_ENSMUSG00000006699.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTAGGGAGTGGAATGT	NA	False	NA	NA	False	NA	NA	NA	137047013	137047860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137047000_137047900
44816	chr1	-	1472	12	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	19	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTAGCTTCTTGTCTC	5034	False	NA	NA	False	NA	NA	NA	87645628	87627425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87627496_87628877_87628990_87629135_87629225_87630838_87630921_87633654_87633745_87635816_87635931_87637337_87637421_87638784_87638874_87639751_87639898_87640907_87641010_87642757_87643034_87645409
44817	chr11	-	3107	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	60	1065	at_least_one_novel_splicesite	FALSE	canonical	3	191	junction_5	125.171983727207	1	169	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGTGCTTTGACAAGGGCT	NA	False	NA	NA	False	NA	NA	NA	95896706	95853196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
44818	chr17	-	3649	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	15	-880	15	880	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	132	167	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTATTTGAAACACAG	NA	False	NA	NA	False	NA	NA	NA	22580366	22556089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
44820	chr11	-	1367	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	-27	4	26	-1	multi-exon	FALSE	canonical	3	21	junction_7	183.081112836772	35	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGATGCACGCGTCTT	NA	False	NA	NA	False	NA	NA	NA	100331873	100320185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
44821	chr10	-	1668	5	FSM	ENSMUSG00000090841.3	ENSMUST00000217733.2	1668	5	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_2	245.142305610435	202	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8245	False	NA	NA	False	NA	NA	NA	128329723	128326729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
44823	chr14	+	2031	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-3	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	896.273607052124	1	105	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGGTAAATATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	30271134	30295547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282547_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292285_30292919_30293004_30293108_30293203_30294169_30294288_30295293
44824	chr10	-	1252	6	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1051.19349313055	1	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATACATTTTAATG	NA	False	NA	NA	False	NA	NA	NA	93725656	93696791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697412_93698830_93698896_93701268_93701366_93704728_93704824_93722845_93722964_93725399
44825	chr7	+	3121	5	FSM	ENSMUSG00000045411.17	ENSMUST00000107950.9	3336	5	166	49	137	-49	multi-exon	FALSE	canonical	3	709	junction_3	44.6933999601731	1	180	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAACTTCTGCCTTCGTG	NA	False	NA	NA	False	NA	NA	NA	43896378	43901687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
44826	chr15	+	1370	3	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	259	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	68	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACACCTCACGCCAGCATT	NA	False	NA	NA	False	NA	NA	NA	100513488	100518632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100517498
44827	chr2	-	3939	4	FSM	ENSMUSG00000085385.8	ENSMUST00000149667.8	3896	4	-37	-6	-8	6	multi-exon	FALSE	canonical	3	64	junction_3	13.8884444373331	1	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTTTTAAATCTGTG	8319	False	NA	NA	False	NA	NA	NA	158203470	158197698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_158197962_158199117_158202520_158202862_158202991_158203324
44828	chr7	-	1618	7	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	450.528732589708	14	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	NA	False	NA	NA	NA	78798794	78783515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78792701_78792799_78794994_78795127_78795369_78795493_78798642
44829	chr16	-	1573	8	FSM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	-249	372	-25	7	multi-exon	FALSE	canonical	3	88	junction_5	9.94064014692275	614	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGAGTGTTCTGTTCATGC	NA	False	NA	NA	False	NA	NA	NA	59459779	59433683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
44830	chr11	-	1853	2	NNC	ENSMUSG00000085156.9	novel	1540	2	NA	NA	12	-7	intron_retention	FALSE	non_canonical	0	0	junction_1	0	33	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTCCAGCTGTGTTGATC	NA	False	NA	NA	False	NA	NA	NA	6478751	6475598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6475669_6476968
44834	chr1	+	2445	21	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	284.852817258317	1	107	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATTTCTTGTGTGAAGT	321	False	NA	NA	False	NA	NA	NA	72346584	72434107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346711_72349603_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378131_72378257_72379147_72379239_72382180_72382302_72385419_72385584_72393401_72393496_72395975_72396046_72420777_72420872_72422516_72422614_72422860_72422929_72433054_72433127_72433866
44835	chr9	+	1103	1	FSM	ENSMUSG00000063856.9	ENSMUST00000192401.2	900	1	317	-520	-23	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	81	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGTGCTGAATATCAGAA	NA	False	NA	NA	False	NA	NA	NA	108216418	108217521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108216400_108217500
44837	chr14	+	2275	5	Antisense	novelGene_ENSMUSG00000002320.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGCCGGAGCGGTAGGCT	NA	False	NA	NA	False	NA	NA	NA	55873619	55880796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_55874072_55875326_55875593_55877844_55878035_55878426_55879048_55880050
44838	chr15	-	1166	10	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	-7	-1404	at_least_one_novel_splicesite	FALSE	canonical	2	46	junction_2	755.343842887234	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGCTACTTTATTCTTT	NA	False	NA	NA	False	NA	NA	NA	10486002	10476268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_10476683_10476892_10476959_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
44839	chrX	-	3398	10	ISM	ENSMUSG00000031290.15	ENSMUST00000112819.9	4892	21	57232	-7	1347	0	3prime_fragment	TRUE	canonical	1	2	junction_9	2.09644025156813	46	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGCCTGGAACTCATTT	NA	False	NA	NA	False	NA	NA	NA	146279814	146253375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_146256073_146263252_146263331_146263463_146263602_146263779_146263893_146264610_146264669_146267749_146267801_146271229_146271275_146274830_146274948_146275034_146275084_146279762
44840	chr4	+	2301	16	NNC	ENSMUSG00000028869.14	novel	2366	16	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	189.186562830333	1	102	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTAGGAACTGTGTTCG	NA	False	NA	NA	False	NA	NA	NA	124923843	124949166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941398_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
44841	chr14	-	1745	12	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	0	1452	intron_retention	FALSE	canonical	0	0	junction_6	226.617929454872	1	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGTAGGTTCACGCGTG	4859	False	NA	NA	False	NA	NA	NA	54754818	54747005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54747095_54747290_54747401_54748335_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752057_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
44843	chr17	+	1856	10	NIC	ENSMUSG00000014767.18	novel	1891	9	NA	NA	12	-22	combination_of_known_junctions	FALSE	canonical	3	12	junction_5	127.046020630418	651	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATAATGCCTGAGACCA	NA	False	NA	NA	False	NA	NA	NA	15720201	15737667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15726633_15726673_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
44844	chrX	+	1447	1	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGGAGGTTAAAATTCA	NA	False	NA	NA	False	NA	NA	NA	49696214	49697661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49696200_49697700
44845	chr15	+	4217	4	ISM	ENSMUSG00000036167.17	ENSMUST00000109256.11	1154	8	8	43849	8	444	5prime_fragment	FALSE	canonical	3	129	junction_2	21.3124898175277	9	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTCCCCCCCCCCCCCCA	NA	False	NA	NA	False	NA	NA	NA	93296238	93343340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381
44846	chr13	-	1313	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	236	4	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312311_34313309_34313338_34314159
44847	chr11	-	1398	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	-2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	173	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCATCACTGATGTCTCA	6393	False	NA	NA	False	NA	NA	NA	102076085	102053331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102053469_102054280_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
44848	chr14	+	3077	3	NNC	ENSMUSG00000037536.15	novel	338	2	NA	NA	8512	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	46	74	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	NA	False	NA	NA	NA	47753320	47769415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47753504_47763661_47763772_47766631
44850	chr19	-	2274	9	ISM	ENSMUSG00000024812.12	ENSMUST00000233027.2	4668	23	63092	6	31985	-6	3prime_fragment	FALSE	canonical	3	372	junction_8	21.6300572121296	4	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGACATAAAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	24088461	24071874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384
44851	chr16	+	1228	5	NIC	ENSMUSG00000058550.16	novel	1271	6	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	233.720318971201	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	48104130	48114600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48104205_48108240_48108359_48111376_48111678_48113273_48113470_48114061
44852	chr17	-	867	2	ISM	ENSMUSG00000038500.16	ENSMUST00000174849.8	581	4	1064	-553	-185	149	3prime_fragment	FALSE	canonical	3	147	junction_1	0	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCACGTCTTTGATCCCA	NA	False	NA	NA	False	NA	NA	NA	36289636	36288502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_36289336_36289602
44853	chr4	+	1947	9	NNC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	60	-23	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	31.8313426515439	5	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATGCATTTCACTGTCA	102	False	NA	NA	False	NA	NA	NA	103171068	103223617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_103171196_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
44855	chr9	+	2439	2	ISM	ENSMUSG00000032103.11	ENSMUST00000034615.10	2019	4	21	216	15	47	intron_retention	FALSE	canonical	3	104	junction_1	0	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATCTTTGCCAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	35470776	35478481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_35470814_35476079
44856	chr9	-	1459	9	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-16	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	2879.84461115092	2	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGTGGCCGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	89996728	89973719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976579_89977185_89977230_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
44857	chr16	+	2801	5	Fusion	ENSMUSG00000039427.15_ENSMUSG00000087168.2	novel	4814	2	NA	NA	4761	11038	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTTGCCTGGAAACGGGC	NA	False	NA	-52	True	NA	NA	NA	5062698	5073814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_5063254_5065320_5067313_5068338_5068420_5070888_5070954_5073706
44858	chr15	-	1302	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	380	-419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	514.932238140654	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCCTGGCCTGTGCCCCT	NA	False	NA	NA	False	NA	NA	NA	83056413	83038113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038123_83038443_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
44860	chr3	-	2539	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	27	-1333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	428	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACATCGTGTAGTACGG	NA	False	NA	NA	False	NA	NA	NA	53771224	53762129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764301_53765291_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
44861	chr17	+	691	1	Intergenic	novelGene_97	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAAGAACGGGAGGGA	NA	False	NA	NA	False	NA	NA	NA	23781875	23782566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23781900_23782600
44862	chr4	+	1675	16	FSM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	-21	0	-21	0	multi-exon	FALSE	canonical	3	103	junction_1	29.5893374188894	61	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	NA	False	NA	NA	NA	116664898	116676628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
44864	chr8	-	3081	8	FSM	ENSMUSG00000034105.10	ENSMUST00000049156.7	3085	8	1	3	1	-3	multi-exon	TRUE	canonical	3	25	junction_5	4.74664220738176	51	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATTGGTAGCAGGCT	NA	False	NA	NA	False	NA	NA	NA	120505154	120486817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_120488570_120489030_120489211_120490674_120490794_120494804_120495234_120497979_120498125_120499112_120499344_120500010_120500180_120505098
44866	chr2	-	1463	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-21	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	437.466443157517	101	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGATATGTGAAACATCCT	NA	False	NA	NA	False	NA	NA	NA	152185973	152179355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180133_152181729_152181928_152184956_152185248_152185776
44867	chr10	-	1744	2	Antisense	novelGene_ENSMUSG00000004207.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTCAATTTCCATCTG	NA	False	NA	NA	False	NA	NA	NA	60132430	60129849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_60130889_60131725
44869	chr11	+	3650	11	ISM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	17309	4	-2761	-4	3prime_fragment	FALSE	canonical	3	440	junction_4	38.9075828084963	1	128	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTATCTCTTTTATCTTTT	NA	False	NA	NA	False	NA	NA	NA	106125060	106139961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
44870	chr18	-	3025	19	Intergenic	novelGene_4509	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	11	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAGAGACATAAACACCAC	NA	False	NA	NA	False	NA	NA	NA	12716069	12672726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_12672876_12673016_12673180_12673589_12673724_12675362_12675509_12680398_12680518_12682247_12682381_12685832_12685951_12686219_12686361_12689681_12689824_12690726_12690858_12694751_12694906_12700720_12700888_12704954_12705148_12707276_12707410_12710806_12710967_12711068_12711200_12713340_12713434_12714746_12714867_12715571
44871	chr4	-	1450	3	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	22	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	492	4	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACAATTCGGTTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	127222932	127219034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220034_127220177_127220565_127222868
44873	chr8	-	1669	7	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	717	intron_retention	FALSE	non_canonical	0	0	junction_3	218.907451271587	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3895	False	NA	NA	False	NA	NA	NA	95328320	95301567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309641_95313949_95314074_95314630_95314730_95315403_95315542_95328124
44874	chr6	-	730	1	Antisense	novelGene_ENSMUSG00000080242.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCACCCAGTTGAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	37784035	37783305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37783300_37784000
44875	chr8	+	3114	24	NNC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	0	-701	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	82.0429137558055	1	149	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACTCAGGTCACCCAGT	NA	False	NA	NA	False	NA	NA	NA	85809943	85824210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85810118_85811029_85811133_85811269_85811434_85811975_85812178_85813439_85813575_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820664_85820759_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
44876	chr2	-	1586	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	229	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	152185951	152179341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179767_152180205_152180608_152181634_152181928_152184956_152185248_152185776
44877	chr5	+	3097	24	NNC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	2	201	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	168.607809940046	1	143	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAACCAGAAGCAGGACC	NA	False	NA	NA	False	NA	NA	NA	121536059	121578195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121536126_121545255_121545334_121546253_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555441_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564211_121564789_121564890_121568667_121568820_121569522_121569649_121572887_121573128_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
44880	chr13	-	1958	1	FSM	ENSMUSG00000064917.2	ENSMUST00000082983.2	60	1	-1742	-156	-1742	156	mono-exon	FALSE	NA	NA	NA	NA	NA	76	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTAATGACATAAAGATTC	NA	False	NA	NA	False	NA	NA	NA	86194909	86192951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_86193000_86194900
44881	chr1	+	3476	13	NNC	ENSMUSG00000042251.13	novel	6900	13	NA	NA	26	1733	intron_retention	FALSE	canonical	3	7	junction_3	17.7153417503963	1	120	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGTTTGTGGTATTGTGT	NA	False	NA	NA	False	NA	NA	NA	131725161	131745847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131725325_131726333_131726421_131728831_131729036_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
44882	chr2	-	1617	13	NNC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	81.5101817089265	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTCCTTGTCTAGTAGG	9009	False	NA	NA	False	NA	NA	NA	25246363	25242308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25242579_25242697_25242769_25243164_25243214_25243405_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
44883	chr13	+	2181	4	FSM	ENSMUSG00000063200.5	ENSMUST00000222305.2	683	4	-1506	8	544	-8	multi-exon	FALSE	canonical	3	1402	junction_3	73.1619208787376	13	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACAGCTGGTCACATT	NA	False	NA	NA	False	NA	NA	NA	43552654	43555462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_43554411_43554772_43554895_43554975_43555054_43555237
44884	chr16	+	2809	11	Antisense	novelGene_ENSMUSG00000093246.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAAGCGCTCGGCTCTTG	NA	False	NA	NA	False	NA	NA	NA	18076910	18107061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096007_18096184_18096381_18098083_18098369_18098478_18098619_18100985_18101147_18101559_18102559_18107029
44886	chr7	+	2815	9	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	-52	28	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	15.4008928312614	77	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCTTTCCTTTACAACTG	965	False	NA	NA	False	NA	NA	NA	51512122	51644751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_51512394_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
44887	chr10	+	1864	15	NNC	ENSMUSG00000019777.17	novel	2005	14	NA	NA	-7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	328.146899657915	590	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTGTCTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	36850532	36877885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_36850588_36850735_36850800_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409_36874566_36876364_36876423_36877524
44888	chr7	+	1909	14	NNC	ENSMUSG00000015165.17	novel	1850	13	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2437.84205914277	1500	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCAAGGGTGGGTTGTC	NA	False	NA	NA	False	NA	NA	NA	28510365	28521685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28510421_28512776_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28516759_28516830_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
44889	chr6	-	2187	16	FSM	ENSMUSG00000004266.16	ENSMUST00000112484.10	2219	16	16	16	16	-3	multi-exon	FALSE	canonical	3	99	junction_10	22.1017847444248	213	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTATTGCCTCCAAGT	8746	False	NA	NA	False	NA	NA	NA	124710101	124697685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
44890	chr1	+	3395	12	FSM	ENSMUSG00000026455.15	ENSMUST00000027725.11	3408	12	7	6	7	-6	multi-exon	FALSE	canonical	3	104	junction_1	24.9889231659096	205	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCAAATTTGTTGGATT	NA	False	NA	NA	False	NA	NA	NA	134383275	134418750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134383404_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
44891	chr14	+	1392	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	59	-251	59	251	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	1350	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCAGCGTTTGTTGACCT	NA	False	NA	NA	False	NA	NA	NA	55252969	55261845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
44892	chr15	+	2253	11	ISM	ENSMUSG00000022561.14	ENSMUST00000164972.8	2237	12	161	3	-8	-3	3prime_fragment	FALSE	non_canonical	3	197	junction_5	30.9497980607305	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACCTTGGGATCCTGGC	4987	False	NA	NA	False	NA	NA	NA	76215704	76219095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
44894	chr19	-	2447	13	NIC	ENSMUSG00000024906.11	novel	1954	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	74	junction_12	11.7553179455087	6	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAATGCCAAGGTCCT	NA	False	NA	NA	False	NA	NA	NA	5538313	5532867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5533058_5533135_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
44895	chr15	+	1943	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	-12	6	-12	-6	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	2	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAAGACTGGGACCCTTG	NA	False	NA	NA	False	NA	NA	NA	85220433	85347407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
44896	chr11	+	1668	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-2	2	intron_retention	FALSE	non_canonical	0	0	junction_9	167.544871454238	10	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGGTTAAGATCATC	9188	False	NA	NA	False	NA	NA	NA	70538110	70542240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747_70541819_70541978
44897	chr14	-	2989	8	NNC	ENSMUSG00000022177.10	novel	1587	10	NA	NA	97	-2	intron_retention	FALSE	non_canonical	0	0	junction_5	157.606588487582	3	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTTTTAGTCATTTTTC	NA	False	NA	NA	False	NA	NA	NA	54791721	54779243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54779909_54781235_54781367_54781661_54783280_54786322_54786458_54787125_54787259_54787350_54787494_54789593_54789668_54791631
44898	chr1	-	2415	6	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	-12	-3	combination_of_known_splicesites	FALSE	canonical	3	13	junction_4	72.0316597059932	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTGTTAGTCCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	121255506	121232084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247357_121247702_121255419
44900	chr5	-	2012	19	FSM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	8	-5	8	5	multi-exon	FALSE	canonical	3	217	junction_15	25.8010551033179	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCATAATTCTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	107745497	107696827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
44901	chr1	-	1691	7	NNC	ENSMUSG00000040843.11	novel	4380	7	NA	NA	-4	656	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	216.539449831511	9	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTCATAGTTTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	165064495	165042494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055105_165055174_165055836_165056017_165064298
44902	chr4	-	3768	18	NNC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	-54	0	intron_retention	FALSE	canonical	0	0	junction_13	92.5600151327996	103	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	7366	False	NA	NA	False	NA	NA	NA	155753709	155739138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155742218_155742311_155742417_155743579_155743723_155743844_155744037_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
44903	chr13	+	620	4	ISM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	1533	715	14	-712	5prime_fragment	FALSE	canonical	3	1299	junction_2	7.58653778449403	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACCAAGACAATGAAGGGC	5567	False	NA	NA	False	NA	NA	NA	55469845	55472370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339
44904	chr9	-	1433	5	FSM	ENSMUSG00000001348.16	ENSMUST00000213815.2	1419	5	-6	-8	-6	1	multi-exon	FALSE	canonical	3	35	junction_4	92.7425873048623	386	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGGTGTGTCATCAAGG	9068	False	NA	NA	False	NA	NA	NA	22042955	22038025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
44905	chr8	+	971	5	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	31	1279	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	2872.6159136752	8	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCATTGTGTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	57964971	57967522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966489_57967104
44906	chr8	-	1293	7	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	canonical	1	109	junction_5	750.461950327189	189	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCTGTGTTTGTCAGTG	8424	False	NA	NA	False	NA	NA	NA	85751886	85744563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746603_85750806_85750955_85751733
44907	chr8	+	2825	18	NNC	ENSMUSG00000031979.18	novel	2825	18	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	90.3911530717095	9	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAGTTATGTATCCAG	NA	False	NA	NA	False	NA	NA	NA	125247548	125278747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_125247691_125252369_125252532_125253838_125253905_125255722_125255796_125256636_125256741_125259167_125259277_125259952_125260137_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273242_125273433_125275255_125275396_125276905_125277090_125278129
44909	chr15	+	3888	3	ISM	ENSMUSG00000022389.16	ENSMUST00000023024.8	4079	4	3576	-162	2831	-3	3prime_fragment	FALSE	canonical	3	69	junction_2	3.5	43	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTGGCAGTGGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	81699190	81711061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81699463_81705399_81705621_81707666
44910	chr6	+	3243	2	Fusion	ENSMUSG00000107761.2_ENSMUSG00000067714.14	novel	1393	2	NA	NA	94	-4	multi-exon	FALSE	canonical	3	12	junction_1	0	64	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAGACATGGAAATACAG	5132	False	NA	NA	False	NA	NA	NA	125044976	125060988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_+_125045331_125058099
44911	chr6	-	1542	8	ISM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	2313	4	2	-4	3prime_fragment	FALSE	canonical	3	333	junction_3	29.2665442484229	716	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACCTGAGCCTGTTGTTG	9277	False	NA	NA	False	NA	NA	NA	88816569	88812899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312
44912	chr7	+	1477	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	49	7	-6	-7	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGGACTGCCAGACCTC	NA	False	NA	NA	False	NA	NA	NA	142606524	142621664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
44913	chr6	-	1233	11	NNC	ENSMUSG00000000399.11	novel	1445	11	NA	NA	0	38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	386.994005121526	3727	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGCAAGTGTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	126826088	126798920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_126799178_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
44915	chr17	+	1515	9	NNC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-915	1443	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	37	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGAGAGGCAGGGGTGGT	NA	False	NA	NA	False	NA	NA	NA	45896130	45900746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45896708_45897018_45897232_45898153_45898241_45898492_45898601_45899223_45899312_45899926_45899996_45900133_45900229_45900336_45900475_45900606
44916	chrX	-	730	7	Antisense	novelGene_ENSMUSG00000067194.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCAGCGTGTGGGACCG	NA	False	NA	NA	False	NA	NA	NA	158168690	158155381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158155409_158159373_158159459_158160452_158160557_158161532_158161584_158162723_158162807_158165682_158165776_158168403
44917	chr8	+	1301	8	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-40	4	combination_of_known_junctions	TRUE	canonical	2	3	junction_2	466.842804465949	90	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTATGAGTATTTTG	NA	False	NA	NA	False	NA	NA	NA	86026511	86034704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86026622_86027737_86027868_86028251_86028354_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
44918	chr4	-	1665	7	NNC	ENSMUSG00000046671.19	novel	1969	7	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	199.902267787703	13	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGAATTTTTTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	134262577	134252872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134253824_134256399_134256544_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
44919	chr19	+	615	2	FSM	ENSMUSG00000024911.8	ENSMUST00000225796.2	2277	2	40	1622	27	-1622	multi-exon	FALSE	canonical	3	159	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAAGACCTGGATGACA	NA	False	NA	NA	False	NA	NA	NA	5510683	5511480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5510807_5510988
44920	chr19	+	1620	5	NIC	ENSMUSG00000024911.8	novel	1209	10	NA	NA	518	245	intron_retention	FALSE	canonical	3	126	junction_2	10.8943792847505	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTGAGCAGTCCTGTCC	515	False	NA	NA	False	NA	NA	NA	5511430	5514239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156
44921	chr19	+	638	1	NIC	ENSMUSG00000024911.8	novel	1569	9	NA	NA	-116	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAAAAAGG	3276	False	NA	NA	False	NA	NA	NA	5514191	5514829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5514200_5514800
44922	chr4	-	1729	1	ISM	ENSMUSG00000063077.16	ENSMUST00000238956.2	10434	50	129638	7	8146	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	35	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCACACCATGCGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	149262511	149260782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_149260800_149262500
44923	chr1	-	1278	6	NNC	ENSMUSG00000026021.16	novel	1215	5	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1870.89555026463	459	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGAAGCTCCTTTTATT	620	False	NA	NA	False	NA	NA	NA	59709962	59678595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_59679428_59680550_59680648_59681576_59681649_59683675_59683754_59694616_59694692_59709838
44924	chr12	-	5030	17	Antisense	novelGene_ENSMUSG00000042700.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	218	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCTTCAGTCTCGGGT	NA	False	NA	NA	False	NA	NA	NA	82479767	82216152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_82216275_82216804_82216852_82358072_82358184_82387437_82389273_82404005_82404136_82409714_82409882_82419144_82419317_82431424_82431512_82434323_82434462_82442944_82443538_82444115_82444385_82449674_82449952_82463675_82463823_82467309_82467436_82469147_82469268_82471786_82472238_82479529
44925	chr5	-	2084	11	ISM	ENSMUSG00000038780.15	ENSMUST00000085684.11	5343	18	71306	2229	3453	380	3prime_fragment	FALSE	canonical	3	174	junction_5	36.6907345252177	53	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAAAAGAATGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	144831351	144815540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_144816267_144817434_144817520_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144829970_144830118_144831283
44926	chr5	-	1930	1	ISM	ENSMUSG00000038780.15	ENSMUST00000126822.2	4710	6	8050	2	8050	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	26	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTTCCTTCCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	144815236	144813306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_144813300_144815200
44927	chr5	-	1830	11	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	527.879579070833	1	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGGACATGCCCACTG	NA	False	NA	NA	False	NA	NA	NA	92231573	92202364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204132_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
44928	chr14	+	2278	8	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-46002	322	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	10.4315064363021	189	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGGTAGAAAACACAGAC	NA	False	NA	NA	False	NA	NA	NA	43735030	43788992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_43735407_43778540_43778627_43779598_43779685_43781120_43781231_43781959_43782123_43783111_43783244_43783926_43784109_43787849
44929	chr11	+	2926	1	FSM	ENSMUSG00000044068.8	ENSMUST00000049506.8	4492	1	-22	1588	-22	394	mono-exon	FALSE	NA	NA	NA	NA	NA	301	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATATTGTCTGAATCTGT	NA	False	NA	NA	False	NA	NA	NA	22921982	22924908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22922000_22924900
44930	chr9	-	1340	10	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	73	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAAAGGAAAGACTTGTC	NA	False	NA	NA	False	NA	NA	NA	64085767	64080664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080715_64082104_64082277_64082476_64082583_64082863_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085002_64085068_64085168_64085300_64085504
44931	chr2	+	1606	9	NNC	ENSMUSG00000026999.15	novel	496	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.769184833438	16	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTTTGGAAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	80469606	80489250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_80469749_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488646
44932	chr1	+	1678	3	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACATGTTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	4928045	4968126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928182_4948168_4948356_4966771
44933	chr17	-	1788	7	NNC	ENSMUSG00000057789.15	novel	1974	7	NA	NA	98	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.5190760100478	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGCCCCCAACACCTCGC	NA	False	NA	NA	False	NA	NA	NA	27247454	27238797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27239834_27239889_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
44934	chr18	+	1568	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	42	0	0	0	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	3058	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	NA	False	NA	NA	NA	47091924	47221062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
44936	chr9	-	2626	16	NIC	ENSMUSG00000032312.8	novel	2390	15	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	2	5	junction_13	51.2720846725259	127	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCCACCCAGCCTCGGCG	NA	False	NA	NA	False	NA	NA	NA	57560754	57533935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57541277_57541329_57559114_57559276_57559849_57559986_57560559
44937	chr7	-	1945	13	NNC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-3197	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	214.397783855669	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	126635073	126626903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628671_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919
44938	chr1	+	3037	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	8	-7	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	31.7940595429747	195	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTAATGCTGTCTGAGAA	NA	False	NA	NA	False	NA	NA	NA	180468906	180518245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180468963_180469481_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
44941	chr12	+	5091	26	ISM	ENSMUSG00000052632.17	ENSMUST00000050990.10	3345	27	56279	-1991	56279	-1	3prime_fragment	FALSE	canonical	3	55	junction_3	9.4584565337057	52	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGTTCATCTGTAAAGT	3357	False	NA	NA	False	NA	NA	NA	21218233	21320171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_21218278_21235098_21235245_21249544_21249620_21250880_21250931_21253960_21254091_21256303_21256390_21262809_21262886_21263139_21263227_21267975_21268080_21268188_21268259_21274305_21274394_21279239_21279289_21279374_21279542_21280823_21280958_21289555_21289651_21294686_21294877_21297288_21297375_21299302_21299419_21301139_21301208_21302741_21302856_21304215_21304469_21308010_21308177_21315131_21315182_21315463_21315535_21315888_21316012_21317718
44942	chr4	-	1502	5	NNC	ENSMUSG00000078552.11	novel	864	7	NA	NA	728	7613	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAAACGCCAGGCCCTTC	NA	False	NA	NA	False	NA	NA	NA	129502313	129494510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129494524_129494774_129495035_129495983_129496052_129500876_129500971_129501246
44943	chr17	+	3760	26	NNC	ENSMUSG00000033826.11	novel	13856	91	NA	NA	-595	-394	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_24	20.1096991523991	1	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGGAGCATCCTGGGAC	NA	False	NA	NA	False	NA	NA	NA	30998111	31093843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_30998149_30998696_30998913_31001357_31001496_31003036_31003165_31003980_31004153_31006118_31006275_31009800_31009957_31013606_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31092301_31092469_31093815
44945	chr10	+	1207	7	NIC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-37	-26	combination_of_known_junctions	FALSE	canonical	3	131	junction_1	1988.62057858093	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAAGACAAAGAGTATGG	NA	False	NA	NA	False	NA	NA	NA	126899365	126903140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126899629_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
44946	chr18	-	2877	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	-25	0	-25	0	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	2489	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTAAAATGTTGTTTT	5536	False	NA	NA	False	NA	NA	NA	34506447	34477937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
44947	chr4	+	2110	6	NNC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	44.7991071339597	4	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATAAATGTGTTTATT	-6	True	NA	NA	False	NA	NA	NA	44756639	44932205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44756693_44761849_44762475_44893532_44893571_44894915_44895042_44929137_44929236_44931035
44948	chr11	-	2005	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	84	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	743.174528738229	1	95	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5285	False	NA	NA	False	NA	NA	NA	88846207	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826808_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
44949	chr11	+	1822	7	FSM	ENSMUSG00000020794.14	ENSMUST00000138247.8	3931	7	232	1877	196	-1877	multi-exon	FALSE	canonical	3	19	junction_1	366.180017963236	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAATAATTGTCAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	72498340	72575430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72498462_72536362_72536479_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
44952	chr1	-	2450	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-3	-5	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	21.5982493503525	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACACTGTTGTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	130390484	130366768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
44953	chr4	+	1562	6	NNC	ENSMUSG00000029076.15	novel	5177	7	NA	NA	18	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	288.408044270613	9	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTCCTCTCCAGCATG	NA	False	NA	NA	False	NA	NA	NA	156077385	156094665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085194_156093589_156093777_156094230
44955	chr15	+	1262	5	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	668.192150507622	4	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4461	False	NA	NA	False	NA	NA	NA	80139700	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80140953_80141044_80141248_80141302
44957	chr10	-	1672	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	9	-32	9	32	multi-exon	FALSE	canonical	3	349	junction_1	0	827	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATCAGAAGCCAGGCAGG	8726	False	NA	NA	False	NA	NA	NA	80156362	80154055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80155382_80156016
44958	chr18	-	1821	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	-50	1531	-50	-1531	multi-exon	FALSE	canonical	3	1260	junction_1	0	3	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGTTGTTCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	37777307	37775074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
44959	chr4	-	2153	13	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	157.840284957787	1	73	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149251117	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238751_149241063_149241254_149242417_149242553_149244515_149244586_149245298_149245411_149246085_149246152_149249506_149249687_149250463_149250538_149251047
44960	chr8	+	2921	6	NIC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	-4	-26	intron_retention	FALSE	canonical	3	182	junction_5	20.4215572373901	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTCAACAAATAAAATCTGC	NA	False	NA	NA	False	NA	NA	NA	96058948	96074109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96072001_96073154
44961	chr7	+	3888	2	NNC	ENSMUSG00000108333.2	novel	254	2	NA	NA	-8571	-316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	68	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTACTCCATCCCTTCC	2932	False	NA	NA	False	NA	NA	NA	34746880	34755488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_34750354_34755073
44962	chr10	-	2891	12	Antisense	novelGene_ENSMUSG00000020156.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGAAATGTGTTTTAG	667	False	NA	NA	False	NA	NA	NA	80079860	80064154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_80064271_80064824_80064915_80065890_80065960_80068069_80068880_80070054_80070161_80071943_80072014_80074146_80074225_80074692_80074754_80075752_80076277_80076597_80077033_80077628_80077719_80079418
44963	chr6	+	2992	3	NIC	ENSMUSG00000034192.6	novel	743	4	NA	NA	11	-5	intron_retention	FALSE	canonical	3	1484	junction_1	171.5	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTATTACTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	91493040	91499597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_91493061_91494029_91496627_91499222
44964	chr9	+	1480	14	Antisense	novelGene_ENSMUSG00000023262.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	492	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGAGGTCGCTCCCAATCT	NA	False	NA	NA	False	NA	NA	NA	106310192	106315394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_106310440_106310555_106310621_106310764_106310846_106311728_106311797_106311882_106312028_106312162_106312214_106312294_106312368_106312665_106312906_106312985_106313058_106313322_106313419_106313893_106313997_106314081_106314152_106314826_106314933_106315331
44965	chr3	-	1766	10	NIC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-7	36	combination_of_known_splicesites	FALSE	canonical	2	5	junction_9	859.934364420396	1	69	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTTGTCTCTGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	108352492	108333891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108352312
44966	chr2	-	4593	17	Antisense	novelGene_ENSMUSG00000057110.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	96	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGCTTGTTATCGCCAC	790	False	NA	NA	False	NA	NA	NA	35035215	34999505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_34999640_35001564_35001818_35003337_35003466_35006682_35006813_35008064_35008208_35009947_35010134_35012669_35012865_35015986_35016106_35017314_35017538_35017934_35019828_35023969_35024123_35025478_35025699_35027641_35027819_35030496_35030632_35033659_35033806_35034223_35034433_35035066
44967	chr12	+	2623	18	NNC	ENSMUSG00000021144.15	novel	717	3	NA	NA	-15821	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	148.463922661972	88	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCCCACCAAGCCCTTC	4310	False	NA	NA	False	NA	NA	NA	113079130	113100817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_113079260_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
44968	chr1	+	2349	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	-10	-6	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	21.1101871142821	101	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATTTTTAGTAGTATT	NA	False	NA	NA	False	NA	NA	NA	183170314	183191014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189544_183190053
44969	chr7	-	2799	2	FSM	ENSMUSG00000037029.9	ENSMUST00000062181.9	2029	2	4	-774	4	774	multi-exon	FALSE	canonical	3	29	junction_1	0	80	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCATATTCTTAAATCCT	NA	False	NA	NA	False	NA	NA	NA	29869148	29859919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29862654_29869083
44970	chr4	+	2090	5	NNC	ENSMUSG00000028936.16	novel	2051	4	NA	NA	-2	-17	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	2501.17717285281	4	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCTGACACATGGCTACT	NA	False	NA	NA	False	NA	NA	NA	152410321	152418510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152410353_152411937_152412043_152413716_152413772_152414460_152414586_152416736
44971	chr6	-	1895	11	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	2	-2	intron_retention	FALSE	canonical	3	139	junction_9	112.395907398802	240	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGAGCCTGTTGTTGGG	6984	False	NA	NA	False	NA	NA	NA	88818862	88812897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
44973	chr7	+	1061	3	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	714	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTTTTTCCTGCTCTAA	NA	False	NA	NA	False	NA	NA	NA	110671138	110673357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673243
44974	chr12	-	1434	11	Antisense	novelGene_ENSMUSG00000021178.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCGACCCGGACAGAACG	NA	False	NA	NA	False	NA	NA	NA	100089624	100076422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_100076470_100078588_100078641_100079311_100079410_100081094_100081220_100081676_100081853_100082142_100082173_100082955_100083053_100085329_100085518_100086241_100086394_100087245_100087405_100089314
44977	chr8	-	1910	7	Antisense	novelGene_ENSMUSG00000031562.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGAGGGAGGCGGGTCCG	NA	False	NA	NA	False	NA	NA	NA	48594700	48563209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_48563282_48563990_48564035_48564693_48564822_48564998_48565143_48590297_48590407_48591813_48591898_48593371
44978	chr7	+	1278	1	Antisense	novelGene_ENSMUSG00000040511.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCCCCCAGCTTGCTGA	8566	False	NA	NA	False	NA	NA	NA	19637554	19638832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_19637600_19638800
44979	chr11	-	1737	14	NNC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	966.713660695424	3	101	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5948	False	NA	NA	False	NA	NA	NA	100510428	100473643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480811_100481738_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490006_100490136_100492553_100492643_100510353
44980	chr4	+	1365	2	ISM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	8137	10702	5642	3748	internal_fragment	FALSE	canonical	3	1166	junction_1	0	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTACTTGCTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	130262061	130273117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_130262148_130271838
44981	chr8	-	1392	3	ISM	ENSMUSG00000031949.18	ENSMUST00000139820.8	2762	9	64	17929	64	-17241	5prime_fragment	FALSE	canonical	3	40	junction_2	13	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGACCCTGCCTGTCAC	NA	False	NA	NA	False	NA	NA	NA	112718870	112715425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_112716552_112716836_112717045_112718812
44982	chr2	+	4354	35	NIC	ENSMUSG00000036833.17	novel	2018	13	NA	NA	2013	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	8.53285934381406	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGCTATTTTACTCTG	NA	False	NA	NA	False	NA	NA	NA	24868172	24944069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_24868234_24870045_24870121_24870214_24870303_24870724_24870805_24871788_24871881_24872043_24872185_24873501_24873662_24877130_24877212_24885289_24885419_24886168_24886250_24887238_24887363_24888633_24888772_24892626_24892728_24892900_24893045_24900725_24900804_24901517_24901724_24905161_24905294_24906518_24906643_24909415_24909530_24911953_24912024_24919518_24919669_24928848_24928913_24929614_24929784_24930957_24931141_24932100_24932220_24937619_24937777_24940010_24940128_24940269_24940340_24940866_24940984_24941612_24941762_24942043_24942197_24942319_24942431_24942564_24942650_24943406_24943511_24943682
44983	chr10	-	1164	4	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	-1	2	intron_retention	FALSE	canonical	3	98	junction_1	1514.91811293181	471	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663101	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661903_23662522_23662779_23662891_23662943_23663053
44984	chr4	+	1598	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	-364	multi-exon	TRUE	non_canonical	0	0	junction_2	29.0118510267787	2	82	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTCATTGAGACAGAAAT	NA	False	NA	NA	False	NA	NA	NA	145159006	145265394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159032_145160315_145160389_145176036_145177038_145177379_145177844_145265359
44985	chr12	-	1590	7	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAAGGTCCACCTGAAGT	3622	False	NA	NA	False	NA	NA	NA	24763982	24759336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24759438_24760352_24760488_24761443_24761540_24761666_24761800_24762657_24762763_24762857_24762972_24763076
44986	chr14	-	4226	23	Antisense	novelGene_ENSMUSG00000114246.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	54	junction_21	11.9530763010135	48	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGGACAGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	10359762	10231198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_10232037_10232598_10232735_10243308_10243452_10244146_10244294_10249042_10249172_10249677_10249755_10250730_10250825_10253754_10253902_10254439_10254576_10255956_10256130_10258043_10258179_10259088_10259224_10259412_10259496_10262382_10262480_10269949_10270042_10278989_10279082_10302885_10303019_10315336_10316106_10317697_10317748_10324278_10324388_10327194_10327380_10347592_10347786_10359629
44988	chr7	-	1174	8	NNC	ENSMUSG00000030697.8	novel	1400	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_3	910.294211241843	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAGGTTCTGTCAGGTT	5413	False	NA	NA	False	NA	NA	NA	126391325	126385039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126385464_126385543_126385734_126386391_126386480_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
44989	chr9	-	2252	14	NNC	ENSMUSG00000032557.14	novel	2404	12	NA	NA	26	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	152.222586945339	261	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTTTGAGATTCTAGTG	NA	False	NA	NA	False	NA	NA	NA	103940307	103923795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103924188_103924254_103924354_103924414_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
44991	chr6	+	2739	19	NIC	ENSMUSG00000030263.14	novel	2319	19	NA	NA	11	0	intron_retention	FALSE	canonical	3	7	junction_2	14.613540144522	124	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	NA	False	NA	NA	NA	145067517	145120654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_145067833_145083185_145083813_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
44992	chr14	-	1704	7	Antisense	novelGene_ENSMUSG00000054051.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTAGGCCTGTGCTAAGC	4489	False	NA	NA	False	NA	NA	NA	32263257	32235477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_32235556_32238902_32239336_32240899_32241015_32242896_32243014_32248102_32248834_32257473_32257624_32263177
44993	chr17	+	2519	8	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	224.475533869779	1	117	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTATTCTTTCCTTTACT	5627	False	NA	NA	False	NA	NA	NA	34128476	34134558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128573_34129404_34129646_34130209_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
44994	chr1	+	2705	15	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-32	5	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_14	160.432006069327	1	121	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAGTTTAAATGCTAAT	NA	False	NA	NA	False	NA	NA	NA	175708716	175736303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720538_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175734171_175734227_175735995
44995	chr19	-	1587	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1040.41397259697	2	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGATTGTGACTTTCATC	NA	False	NA	NA	False	NA	NA	NA	8691236	8684934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690211_8690919
44996	chr14	-	3587	5	ISM	ENSMUSG00000036242.16	ENSMUST00000118129.2	3100	8	-12	68363	0	-21142	5prime_fragment	FALSE	canonical	3	28	junction_3	3.57071421427143	4	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTGATTTGTGAACACAT	NA	False	NA	NA	False	NA	NA	NA	50020840	49987487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
44999	chr7	-	1141	4	NNC	ENSMUSG00000002985.17	novel	1408	4	NA	NA	-57	0	intron_retention	FALSE	canonical	0	0	junction_1	4561.29954679098	18	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	19433034	19430196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19431000_19431399_19431573_19432112_19432179_19432935
45000	chr2	-	3329	13	NIC	ENSMUSG00000027210.21	novel	3718	13	NA	NA	583	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	21.4644408783975	6	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTAGGCTTTGGTGTTTTT	186	False	NA	NA	False	NA	NA	NA	115894366	115693549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_115694995_115697290_115697386_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115872419_115872609_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668
45001	chr11	+	2220	16	FSM	ENSMUSG00000018906.15	ENSMUST00000093107.12	2263	16	51	-8	0	-2	multi-exon	FALSE	canonical	3	31	junction_12	14.6945190084225	146	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTTATTTTGGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	53991800	54022486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
45002	chr6	-	1543	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	91	-562	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1756.62783708579	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGTTTGGATGATGGCT	9360	False	NA	NA	False	NA	NA	NA	128415549	128407627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412786_128413519_128413678_128415368
45003	chr15	+	3349	25	NIC	ENSMUSG00000023007.16	novel	3129	25	NA	NA	-34	3	intron_retention	TRUE	canonical	3	106	junction_20	27.9458802370264	81	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAACTCCTTTGTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	99193085	99214894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207917_99212458_99212576_99212723_99212862_99213071_99213168_99213360_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
45004	chr2	-	1752	4	NNC	ENSMUSG00000027079.16	novel	1912	3	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	128.998708003866	2	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGTTGGTATGATTCTT	NA	False	NA	NA	False	NA	NA	NA	84557596	84553470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84554183_84554239_84554562_84555872_84556501_84557506
45005	chr11	-	1769	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	548	13	0	-2	multi-exon	FALSE	canonical	3	2240	junction_1	249.671049855795	5	39	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGACCGTTCTTTGGT	5930	False	NA	NA	False	NA	NA	NA	100510446	100473656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
45006	chr7	+	1354	8	NNC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	-7	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2214.746514265	2	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATTTAATAAAGGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	142606523	142621631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_142606728_142616244_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
45007	chrX	-	2166	12	Antisense	novelGene_ENSMUSG00000015291.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	102	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGGCGTCTGTCGGTT	NA	False	NA	NA	False	NA	NA	NA	73355316	73348856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73349048_73350184_73350293_73350448_73350549_73350706_73350844_73351277_73351477_73351735_73351866_73352676_73352780_73353566_73353736_73353990_73354107_73354241_73354297_73354390_73354798_73354865
45008	chr11	+	726	7	NNC	ENSMUSG00000020372.16	novel	1542	7	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2443.06697615927	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691188	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_48691199_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
45009	chr6	-	1654	7	NNC	ENSMUSG00000079343.5	novel	2662	11	NA	NA	-867	89037	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1.37436854187255	2	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTTCCCTTCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	124613911	124512546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124512966_124607630_124608177_124609020_124609147_124611973_124612152_124612440_124612649_124612985_124613126_124613874
45010	chr6	-	2163	6	ISM	ENSMUSG00000038521.18	ENSMUST00000160505.8	2946	12	6717	4	4773	-1	3prime_fragment	FALSE	canonical	1	3	junction_4	4.58693797647189	4	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTGGTCTGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	124512563	124507307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124508700_124509499_124509575_124510232_124510362_124510854_124510934_124511316_124511433_124512191
45011	chr1	+	1615	7	Antisense	novelGene_ENSMUSG00000015961.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTATACTGGTTAGCTA	NA	False	NA	NA	False	NA	NA	NA	177590948	177603197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_177591864_177595220_177595371_177597490_177597587_177598704_177598831_177599636_177599793_177601143_177601269_177603150
45012	chr2	+	3959	12	Genic_Genomic	ENSMUSG00000084781.2	novel	1190	4	NA	NA	-5236	1728	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTCTCGGTCTGCCGCTCC	3167	False	NA	NA	False	NA	NA	NA	92234000	92264381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_92236166_92241970_92242115_92242960_92243050_92243291_92243496_92243610_92243762_92243978_92244289_92246494_92246639_92252505_92252594_92253220_92253408_92254889_92255032_92257245_92257354_92264154
45013	chr7	+	2151	15	FSM	ENSMUSG00000003762.14	ENSMUST00000003860.13	2181	15	25	5	25	0	multi-exon	TRUE	canonical	3	74	junction_1	14.7544528041883	194	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTCTTTTCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	26932472	26957370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_26932599_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
45014	chr8	-	2084	10	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	4	intron_retention	FALSE	canonical	0	0	junction_5	73.6221585001569	2	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578640	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573836_106575382_106575532_106575644_106575688_106575818_106576346_106576464_106576556_106578502
45015	chr3	-	1506	4	NIC	ENSMUSG00000028066.16	novel	1007	5	NA	NA	-21	3	intron_retention	FALSE	canonical	0	0	junction_1	407.613378910294	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGAGGAGGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	88317659	88301446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88301878_88303211_88303408_88306441_88307124_88317462
45016	chr13	+	1186	2	ISM	ENSMUSG00000021326.14	ENSMUST00000139287.4	683	4	1041	-389	1035	1	3prime_fragment	FALSE	canonical	3	769	junction_1	0	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTTTTGTTTTTGTTATG	NA	False	NA	NA	False	NA	NA	NA	21375065	21377034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_21375417_21376199
45017	chr17	+	2123	4	Intergenic	novelGene_44	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	115	junction_3	58.5168541723	2	118	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17399584	17426485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17422956_17423084_17423325_17423387_17424679
45018	chr6	-	2170	10	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	4	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	245.759945103518	2	113	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTAGCCTCACAGTTCTT	NA	False	NA	NA	False	NA	NA	NA	95695777	95451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452213_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
45019	chr7	-	1921	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	775.057778491385	1	80	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002204	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995234_98995410_98995630_98996131_98996365_98996472_98996572_98998009_98998670_99002093
45020	chr5	+	3547	5	NIC	ENSMUSG00000029120.11	novel	453	2	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	87.2936853386314	171	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGCTCGCAAGGCTGC	5240	False	NA	NA	False	NA	NA	NA	37096743	37112422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_37097136_37097440_37097606_37104411_37104582_37106896_37106989_37109694
45021	chr9	+	3927	8	Fusion	ENSMUSG00000111521.2_ENSMUSG00000035382.10	novel	3893	18	NA	NA	-3320	1162	intron_retention	FALSE	canonical	2	4	junction_3	14.4786965249371	3	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCCCAAAGCCATTAGAG	NA	False	NA	NA	False	NA	NA	NA	45826570	45842186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_45827387_45830059_45830228_45830543_45830652_45837215_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
45022	chr6	-	1141	9	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1930.50511120147	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437591_125437646_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
45023	chrX	+	2306	12	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	89.8311547495431	39	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATTTATGACTTGACCT	3762	False	NA	NA	False	NA	NA	NA	7588211	7594422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7588470_7589553_7589993_7590087_7590160_7590262_7590338_7590425_7590531_7591984_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
45024	chrX	-	2181	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68056	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	31.5471428535489	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	NA	False	NA	NA	NA	17117551	16998287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_16998612_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
45025	chr11	-	1081	10	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	11	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8045.04558373938	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTATTTTAATAAAGTAG	NA	False	NA	NA	False	NA	NA	NA	33113061	33102528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104055_33105998_33106049_33107013_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
45026	chr17	+	1922	5	ISM	ENSMUSG00000007041.10	ENSMUST00000007257.10	1466	6	1462	30	-1022	-30	3prime_fragment	FALSE	canonical	3	1087	junction_3	70.9520084282327	46	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAAATCTAGTGTTGTT	3138	False	NA	NA	False	NA	NA	NA	35270403	35277695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
45027	chr19	+	2165	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	15	-4	15	4	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	450	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGACCAATCATTTATGG	9086	False	NA	NA	False	NA	NA	NA	46678359	46691825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
45028	chr14	+	1365	10	NIC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	25	4	combination_of_known_splicesites	FALSE	canonical	3	239	junction_2	190.414168473765	202	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATAGTTTTGTTGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	62569541	62610445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
45029	chr2	-	2454	11	NIC	ENSMUSG00000027210.21	novel	2810	12	NA	NA	-5	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	21.2746327817897	2	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTTTTGTTAGGCTTTG	1536	False	NA	NA	False	NA	NA	NA	115893016	115693557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_115694995_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115892880
45030	chr18	+	1855	11	NNC	ENSMUSG00000024563.17	novel	8089	11	NA	NA	-141	-151	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	108.43172967356	3	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCCACTTCTCCGTTATT	NA	False	NA	NA	False	NA	NA	NA	76374975	76438214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_76375055_76395515_76395799_76419930_76420021_76420998_76421105_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
45032	chr7	-	2240	9	FSM	ENSMUSG00000060601.14	ENSMUST00000123358.9	1853	9	-46	-341	-6	8	multi-exon	FALSE	canonical	0	0	junction_8	201.405336014218	306	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAATAAAGTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	44203381	44199067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203232
45033	chr3	+	2803	11	NNC	ENSMUSG00000036503.14	novel	3244	10	NA	NA	0	56	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	62.7914006851257	413	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACTAGGAAAAGAAATTTTA	NA	False	NA	NA	False	NA	NA	NA	57643502	57742596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709138_57709340_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
45035	chr11	+	724	1	Antisense	novelGene_ENSMUSG00000062825.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGACTCATCATACTCCT	13	True	NA	NA	False	NA	NA	NA	120236521	120237245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120236500_120237200
45036	chr5	+	3008	23	Antisense	novelGene_ENSMUSG00000107109.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAGCCCGACGGGCGC	NA	False	NA	NA	False	NA	NA	NA	73255585	73413917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_73255769_73257284_73257378_73257630_73257815_73258796_73259037_73262019_73262125_73265304_73265438_73265811_73265985_73267528_73267615_73269704_73269815_73270091_73270198_73275828_73275932_73277163_73277264_73279208_73279299_73279554_73279727_73282026_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293661_73293721_73305360_73305572_73352333_73352457_73378250_73378419_73413745
45037	chr13	-	2833	1	NIC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	42	252	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	29	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACAGAACCTCTCCAGCA	NA	False	NA	NA	False	NA	NA	NA	68730171	68727338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_68727300_68730200
45038	chr12	-	1091	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2683.04605298697	11	27	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTCTGAGTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111635922_111636343_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
45039	chr1	-	3078	17	Antisense	novelGene_ENSMUSG00000039354.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	287	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAGTACGGCCGCAGATC	NA	False	NA	NA	False	NA	NA	NA	72672293	72622399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_72622594_72624787_72625563_72626208_72626260_72630219_72630434_72630982_72631035_72634946_72635132_72636535_72636685_72637925_72638089_72640527_72640592_72650451_72650594_72651966_72652182_72655664_72655738_72659190_72659292_72665619_72665806_72667257_72667359_72668531_72668628_72671976
45040	chr1	+	1592	10	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	-2	-48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	323.932472767983	2	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTATTTACGGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	15875878	15913646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903696_15908424_15908513_15913144
45042	chr18	+	1416	5	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	8	-111	intron_retention	FALSE	canonical	3	6761	junction_1	2326.99946282761	30	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGGTCTTCTGGTGGTC	NA	False	NA	NA	False	NA	NA	NA	75133555	75136340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75135924_75136264
45043	chr19	+	1301	10	NIC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	1012	junction_7	81.959038248489	87	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTGGACCTTTTGTGAT	958	False	NA	NA	False	NA	NA	NA	8713185	8717986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8713270_8713350_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
45044	chr1	-	1827	12	NNC	ENSMUSG00000038079.15	novel	1869	13	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	73.814711069325	26	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTTTATTAACTGAAGG	4043	False	NA	NA	False	NA	NA	NA	59159262	59139751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155097_59157133_59157166_59159155
45045	chr6	-	2146	7	NIC	ENSMUSG00000040613.15	novel	2127	8	NA	NA	-27	2	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	14.0919598826186	140	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTTGTGTTTGTGGTG	8681	False	NA	NA	False	NA	NA	NA	122579373	122554755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122555895_122557646_122557766_122558311_122558710_122568045_122568164_122573590_122573737_122577016_122577085_122579215
45046	chr1	-	2065	14	NNC	ENSMUSG00000026134.12	novel	2132	6	NA	NA	22	-8851	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	103.310985685519	2	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTACGTTTGTGGAACCCT	NA	False	NA	NA	False	NA	NA	NA	33708854	33501741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_33502349_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
45048	chr14	-	2031	9	FSM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	-18	3	-18	-3	multi-exon	FALSE	canonical	3	137	junction_3	16.2244992218558	199	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAGAAGTAAGTGGTTCT	1713	False	NA	NA	False	NA	NA	NA	70680905	70676199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
45049	chr5	+	2027	6	FSM	ENSMUSG00000038525.17	ENSMUST00000148873.8	1167	6	214	-1074	10	-4	multi-exon	FALSE	canonical	1	1	junction_1	154.901775328755	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTCCAATTTGTT	NA	False	NA	NA	False	NA	NA	NA	21851024	21867688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_21851234_21853659_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
45050	chr1	-	2415	3	Antisense	novelGene_ENSMUSG00000065228.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	155	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAATGTTAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	160866105	160863319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160865608_160865794_160865841_160866024
45051	chr9	+	1717	9	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	372.686195075696	7	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGAGTGGCTTTTC	385	False	NA	NA	False	NA	NA	NA	45281499	45307453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301931_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306635_45306688
45052	chr6	-	2731	12	NNC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	-2	-13	intron_retention	FALSE	non_canonical	0	0	junction_1	24.981315331713	106	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTATTATCAGTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	87649131	87605418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87605575_87605982_87606199_87606310_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
45055	chrX	+	1084	3	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6303	3	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTTGTTCGTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36061009_36062078
45056	chr7	-	2299	15	NNC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	390.056929387577	2	121	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143102860	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078026_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089385_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
45058	chr7	-	2332	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	67	-1	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTTTCTGACCAACTTT	NA	False	NA	NA	False	NA	NA	NA	112968476	112914853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
45059	chr9	+	1253	11	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	776.612361477719	7	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1145	False	NA	NA	False	NA	NA	NA	108437634	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438265_108440033_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
45061	chr19	-	2128	15	NIC	ENSMUSG00000024906.11	novel	2067	16	NA	NA	-12	0	intron_retention	FALSE	canonical	3	74	junction_14	11.3560197108613	189	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTCGGCTGTTAAGG	NA	False	NA	NA	False	NA	NA	NA	5538351	5532885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
45064	chr6	+	1454	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	61	4	61	3	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTGTGAAGACTTTTT	2376	False	NA	NA	False	NA	NA	NA	73225425	73253890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
45065	chr11	+	3873	1	Antisense	novelGene_ENSMUSG00000013415.10_AS_novelGene_ENSMUSG00000093358.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	196	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCACTCAAGAGGCAGAG	7228	False	NA	NA	False	NA	NA	NA	95851098	95854971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_95851100_95855000
45066	chr14	-	1751	8	NNC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-6	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1396.76661600707	1	75	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGACAATTTTTTTTTT	8719	False	NA	NA	False	NA	NA	NA	52341491	52311900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312609_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
45069	chr6	+	2717	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-8	-463	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_11	174.270144698779	11	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTCCAACACAAAACTGT	5718	False	NA	NA	False	NA	NA	NA	83254366	83281463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83276591_83276676_83277452_83277521_83280307
45070	chr14	+	1664	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	63	438	63	6	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	30	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAAATGATTTTAAAAA	1749	False	NA	NA	False	NA	NA	NA	26359291	26377975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
45071	chr6	-	2308	8	FSM	ENSMUSG00000035378.18	ENSMUST00000089245.7	1638	8	3	-673	-3	672	multi-exon	FALSE	canonical	1	7	junction_2	71.8828411871905	22	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGCCTCTGTGTGCACA	NA	False	NA	NA	False	NA	NA	NA	100648097	100549370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_100550750_100588696_100588818_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
45072	chr3	-	1628	7	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	10	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	288.47727620887	9	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTATATAACTTAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	131065740	131027109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131042046_131042223_131043451_131043581_131065524
45073	chr1	+	2309	7	NNC	ENSMUSG00000025903.15	novel	2507	9	NA	NA	0	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	290.569794637288	1	125	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAATTTAATTTTGGC	NA	False	NA	NA	False	NA	NA	NA	4878133	4916934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878726_4902517_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
45075	chr10	-	4193	21	Antisense	novelGene_ENSMUSG00000069601.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	173	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTCAGACCGAAACAT	NA	False	NA	NA	False	NA	NA	NA	69860282	69761759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_69762022_69763524_69763647_69768221_69768326_69786784_69786888_69789268_69789301_69791753_69791976_69794744_69794901_69809549_69809767_69811878_69812099_69813549_69813635_69814297_69814528_69815145_69815272_69816099_69816223_69817943_69818028_69830201_69830283_69833935_69834057_69835184_69835323_69837747_69838430_69840437_69840817_69851399_69851484_69859660
45076	chr12	-	4194	26	Antisense	novelGene_ENSMUSG00000113571.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	16	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCCATCTTGGAAGAGCG	NA	False	NA	NA	False	NA	NA	NA	35195447	35097218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_35097409_35128896_35129010_35132868_35132966_35135932_35136028_35136861_35136980_35141358_35141487_35141571_35141668_35142821_35142910_35148226_35148312_35150536_35150676_35151018_35151109_35153039_35153139_35155104_35155298_35156709_35156820_35157425_35157554_35160620_35160660_35162432_35162501_35169728_35169903_35172914_35173023_35174426_35174538_35182017_35182179_35183305_35183380_35188024_35188175_35188400_35188466_35190164_35190277_35194084
45077	chrX	+	2955	14	NIC	ENSMUSG00000025592.18	novel	2520	13	NA	NA	-21	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.6794648440312	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAGATACAAGAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	112207927	112741598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_112208633_112362154_112362194_112465944_112466058_112549590_112549723_112614405_112614565_112633941_112634115_112659967_112660104_112662516_112662601_112675482_112675573_112724539_112724689_112724813_112724962_112727319_112727467_112729645_112729712_112740784
45078	chr2	-	1727	8	FSM	ENSMUSG00000003418.12	ENSMUST00000003509.10	7618	8	526	5365	-245	768	multi-exon	FALSE	canonical	3	67	junction_4	4.91146098219174	10	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCCATTCTCCCTCCT	NA	False	NA	NA	False	NA	NA	NA	13798349	13661196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_13662102_13670230_13670324_13673595_13673709_13677293_13677439_13701638_13701726_13728253_13728344_13797564_13797664_13798154
45079	chr13	-	1888	10	NNC	ENSMUSG00000034152.7	novel	4922	13	NA	NA	16	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	83.0996724154527	39	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGGTGTGATGTCAG	7189	False	NA	NA	False	NA	NA	NA	74356812	74320110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74320364_74321414_74321473_74330403_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
45080	chr5	+	1353	10	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	736.951545386068	3	34	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	8083	False	NA	NA	False	NA	NA	NA	145051075	145064879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059440_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063694_145064460_145064537_145064630
45081	chr2	-	1663	1	NIC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-2	529	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACCCACTTACGGTGAC	NA	False	NA	NA	False	NA	NA	NA	25114668	25113005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25113000_25114700
45082	chr18	-	1715	10	FSM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	-12	0	-12	0	multi-exon	FALSE	canonical	3	128	junction_3	10.8423039781937	534	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35631994	35399448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
45083	chr8	+	2066	10	NNC	ENSMUSG00000031813.9	novel	1062	9	NA	NA	0	-62	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	188.217237242134	16	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGAAGTCTGTGTCTAG	NA	False	NA	NA	False	NA	NA	NA	71995586	72000608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71995702_71995776_71995876_71996030_71996128_71996600_71996768_71997867_71997995_71998190_71998311_71998393_71998915_71999118_71999679_72000221_72000279_72000405
45084	chr18	+	2939	3	ISM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	91	7	68	2	intron_retention	FALSE	canonical	3	221	junction_1	511.5	19	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACACGTTTGTTGTGGGAA	NA	False	NA	NA	False	NA	NA	NA	80250200	80255949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_80250277_80250368_80250559_80253276
45085	chr8	-	2127	13	NNC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	5	-1	intron_retention	FALSE	non_canonical	0	0	junction_12	68.4450306612702	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTATATGTGCCGATTT	NA	False	NA	NA	False	NA	NA	NA	57003873	56984557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57002259_57002420_57003097_57003633_57003817
45086	chrX	-	2447	3	ISM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	2885	1	2885	-1	intron_retention	FALSE	canonical	3	522	junction_1	47	2	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTCCCAATTTCTCATT	NA	False	NA	NA	False	NA	NA	NA	139854553	139849178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_139850059_139852895_139853063_139853153
45088	chr1	-	4122	5	ISM	ENSMUSG00000038331.16	ENSMUST00000177424.2	4694	7	98269	-6	98237	-1	3prime_fragment	FALSE	canonical	1	1	junction_2	3.24037034920393	20	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGTTTGTCAAATAGTT	NA	False	NA	NA	False	NA	NA	NA	56910762	56833140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_56836404_56870597_56870796_56884734_56884891_56889329_56889543_56910470
45089	chr1	+	674	5	ISM	ENSMUSG00000060679.15	ENSMUST00000185376.7	2088	8	-10	11734	-10	6014	5prime_fragment	FALSE	canonical	3	624	junction_3	34.2454376523355	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAAGTCCTGTCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	42890425	42927105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866
45090	chr6	+	1894	12	NNC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-1058	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_11	144.891238777161	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	8886	False	NA	NA	False	NA	NA	NA	30088829	30140903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214_30140271_30140583
45091	chr1	-	3673	1	Antisense	novelGene_ENSMUSG00000026096.15_AS_novelGene_ENSMUSG00000100679.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	53	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGGAAAGACGTGCGCGG	NA	False	NA	NA	False	NA	NA	NA	53356542	53352869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_53352900_53356500
45092	chr14	-	1418	3	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGGAGTCCACAGTTAT	8629	False	NA	NA	False	NA	NA	NA	54855474	54851576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54852071_54853578_54854279_54855250
45093	chr6	-	1621	7	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	1	-271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.385579403125	8	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGATGTTTGGGAGAGCT	NA	False	NA	NA	False	NA	NA	NA	120893763	120870085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120870425_120870670_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
45094	chr6	-	2345	1	NIC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	446	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTGGGGACCTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	88815251	88812906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88812900_88815300
45096	chr8	+	2589	3	ISM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	287	35	80	-35	intron_retention	FALSE	canonical	3	543	junction_2	1	3	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGTTGTCTTAAGAATAAA	6003	False	NA	NA	False	NA	NA	NA	84682422	84696791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84682567_84691659_84691776_84694462
45097	chr11	+	1642	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	63	-270	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4245.84773160791	1	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATATCATGCCTCCATC	3146	False	NA	NA	False	NA	NA	NA	75623849	75656401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647780_75650080_75650255_75655445
45098	chr8	-	2804	11	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	-4391	-921	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	175.416646872525	1	128	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATTCAAGATTACTACTC	NA	False	NA	NA	False	NA	NA	NA	81561904	81491989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492284_81492519_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81561848
45099	chr12	+	2599	19	NIC	ENSMUSG00000021144.15	novel	2789	20	NA	NA	12	-4	combination_of_known_junctions	FALSE	canonical	3	225	junction_3	92.1761598486531	510	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACCAAGCCCTTCTGCG	9458	False	NA	NA	False	NA	NA	NA	113062032	113100821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_113062066_113075765_113075834_113080607_113080702_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
45100	chr14	+	3635	9	NNC	ENSMUSG00000006526.14	novel	3822	9	NA	NA	29	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	72.9001886142965	83	12	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGGAGACATGGTGGTTGC	NA	False	NA	NA	False	NA	NA	NA	30547579	30599161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30547604_30547671_30547848_30584836_30584886_30586385_30586482_30588579_30588702_30592707_30592821_30593437_30593516_30594506_30594657_30596334
45103	chr15	+	1678	8	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	-28	7	4	-5	intron_retention	FALSE	canonical	3	312	junction_3	28	826	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAACCCCTTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	102426865	102432104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
45105	chr19	+	2629	9	NNC	ENSMUSG00000034445.9	novel	3130	8	NA	NA	28	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	32.8669191589355	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTTTTGTTCAGACTG	NA	False	NA	NA	False	NA	NA	NA	10554563	10567196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10554622_10555097_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
45106	chr15	+	3767	24	FSM	ENSMUSG00000023032.13	ENSMUST00000162049.2	3532	24	-239	4	-239	-4	multi-exon	FALSE	canonical	3	7	junction_1	9.00556433744809	32	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGACATTTTCTCTGAT	4276	False	NA	NA	False	NA	NA	NA	100678895	100713812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100679220_100680826_100680977_100681667_100681804_100682595_100682757_100685044_100685234_100686040_100686127_100686890_100687049_100687715_100687804_100688786_100688934_100689477_100689579_100693643_100693819_100694385_100694520_100695873_100696120_100697527_100697634_100698360_100698523_100701115_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330_100712427_100713499
45107	chr15	+	919	1	ISM	ENSMUSG00000023032.13	ENSMUST00000023776.13	11790	25	54138	7165	1531	773	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGAGCAAGTGTAGACCTC	NA	False	NA	-40	True	NA	NA	NA	100713765	100714684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_100713800_100714700
45108	chr15	+	1971	4	NIC	ENSMUSG00000022338.9	novel	3000	5	NA	NA	-6	0	intron_retention	FALSE	canonical	3	627	junction_1	155.701280948131	53	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9665	False	NA	NA	False	NA	NA	NA	44291536	44299263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_44291639_44292955_44293033_44295833_44297370_44299007
45109	chr3	-	2104	17	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	3	-15	combination_of_known_splicesites	FALSE	canonical	1	19	junction_7	186.606496068599	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATACTTGAAGCCAAGGC	NA	False	NA	NA	False	NA	NA	NA	95662144	95647302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95654750_95654969_95655353_95655453_95655798_95655867_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
45110	chr6	-	1049	1	ISM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	48611	5318	32642	5	mono-exon	FALSE	NA	NA	NA	NA	NA	12	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	NA	False	NA	NA	NA	144945927	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_144944900_144945900
45111	chr1	+	1324	5	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	14	-8	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_2	443.679712743326	3	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGATTCTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	172327825	172334939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_172327900_172332686_172332895_172333369_172333503_172333752_172333856_172334133
45112	chr8	+	2166	3	FSM	ENSMUSG00000033998.10	ENSMUST00000046765.10	2235	3	69	0	69	0	multi-exon	FALSE	canonical	3	118	junction_2	9	156	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGGTTTATTACAACT	NA	False	NA	NA	False	NA	NA	NA	126721977	126757424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_126722554_126751750_126752147_126756230
45113	chr12	+	1986	13	NNC	ENSMUSG00000017843.15	novel	2790	13	NA	NA	18451	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_12	316.615916986005	8	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	NA	False	NA	NA	False	NA	NA	NA	110432191	110538122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537203_110537631
45115	chr13	-	2827	29	NNC	ENSMUSG00000021585.11	novel	2910	31	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	51.9624447391124	1	51	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCTACTTTCTTAGGAA	NA	False	NA	NA	False	NA	NA	NA	74956048	74842362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883442_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894780_74902429_74902490_74928621_74928691_74946774_74946838_74955937
45116	chr14	+	2099	10	NNC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	-7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	131.034158208018	54	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCAGTAGTTTTTATAC	8879	False	NA	NA	False	NA	NA	NA	122116024	122258447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122116092_122116139_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
45117	chr3	+	2271	5	FSM	ENSMUSG00000037661.15	ENSMUST00000147697.2	754	5	-148	-1369	2	0	multi-exon	FALSE	canonical	3	39	junction_4	24.6018292002851	22	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30910143	30951339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30948277_30948390_30949858
45118	chr10	+	1567	9	NIC	ENSMUSG00000035351.17	novel	1267	10	NA	NA	-13	7	intron_retention	FALSE	canonical	3	484	junction_1	61.7474695837813	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTATTGTGTTGGTGTAC	NA	False	NA	NA	False	NA	NA	NA	87982875	88014259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010796_88012934_88013029_88013995
45119	chr4	-	2872	26	ISM	ENSMUSG00000040738.11	ENSMUST00000108319.9	3220	27	211	4379	211	-7	5prime_fragment	FALSE	canonical	3	373	junction_21	32.4407151585781	7	37	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATTGTGCAAAGATCTTG	210	False	NA	NA	False	NA	NA	NA	11254047	11208761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
45120	chr7	+	1852	2	FSM	ENSMUSG00000043964.15	ENSMUST00000061587.13	1996	2	2	142	2	-142	multi-exon	FALSE	canonical	3	68	junction_1	0	162	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCTATGGCTATGAATG	NA	False	NA	NA	False	NA	NA	NA	127368988	127374180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127369389_127372728
45121	chr5	-	2096	12	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-40	-3	at_least_one_novel_splicesite	TRUE	non_canonical	2	111	junction_3	23.9707121571787	634	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTGGGAAGCCAACCAT	NA	False	NA	-100	True	NA	NA	NA	24628568	24623241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24624461_24624597_24624679_24624780_24624841_24625255_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
45122	chr18	-	2300	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	NA	False	NA	NA	NA	70663341	70641755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
45123	chr8	+	3555	11	Antisense	novelGene_ENSMUSG00000036534.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCAAGTAACACGTGAGC	NA	False	NA	NA	False	NA	NA	NA	96562804	96580136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_96564302_96567043_96567096_96568148_96568954_96570389_96570505_96570733_96570792_96571517_96571618_96572359_96572572_96572760_96572959_96575007_96575395_96579427_96579536_96580113
45124	chr6	+	2787	9	NIC	ENSMUSG00000030166.15	novel	1693	12	NA	NA	-8	0	intron_retention	FALSE	canonical	3	31	junction_8	11.4209237805004	7	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTTTGGCTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	119879680	119899784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_119879797_119888008_119888103_119889962_119891199_119892194_119892314_119892927_119893004_119895547_119896039_119897070_119897152_119897767_119897990_119899432
45128	chr3	-	1650	7	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-3709	-14	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	493.906423885695	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATCAAATGTACCTGGC	NA	False	NA	NA	False	NA	NA	NA	157615071	157599898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157609356_157609438_157610781_157610835_157611819_157611942_157612956_157613110_157614535
45129	chr11	+	2653	1	NIC	ENSMUSG00000044950.8	novel	3277	2	NA	NA	-713	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	69	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAATCCAAATTATTTGT	800	False	NA	NA	False	NA	NA	NA	43595356	43598009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_43595400_43598000
45130	chr3	+	2417	3	Antisense	novelGene_ENSMUSG00000002227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACACCAACCTGGGAGTGT	NA	False	NA	NA	False	NA	NA	NA	104704127	104707101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104704477_104704589_104705879_104706322
45131	chr8	+	1335	2	ISM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	61	1292	61	311	intron_retention	FALSE	canonical	3	20484	junction_1	0	4	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAAGTGGACACTGCTGT	NA	False	NA	NA	False	NA	NA	NA	123829149	123830691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123829185_123829391
45132	chr19	+	2573	3	Antisense	novelGene_ENSMUSG00000024640.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	62	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACAGGGCCTGGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	15882503	15888087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_15883514_15884291_15884432_15886664
45133	chrX	+	3074	17	ISM	ENSMUSG00000031093.15	ENSMUST00000033419.13	6665	53	17	92931	17	-208	intron_retention	FALSE	canonical	3	106	junction_16	9.87559333660515	7	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTACTGCCCCTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	35152501	35247284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_35152686_35208063_35208181_35208264_35208355_35209368_35209452_35210537_35210608_35210959_35211056_35224254_35224390_35226891_35227070_35227434_35227515_35228698_35228783_35232342_35232484_35233689_35233903_35239699_35239823_35241139_35241223_35243959_35244083_35244267_35244345_35246087
45136	chr4	-	4317	1	ISM	ENSMUSG00000045589.8	ENSMUST00000053681.6	6817	5	28679	223	28424	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	169	75	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGATATGAGTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	56961712	56957395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_56957400_56961700
45137	chr13	+	2484	22	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	857	1145	-18	25	3prime_fragment	FALSE	canonical	3	649	junction_5	69.0952216861915	1	109	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	304	False	NA	NA	False	NA	NA	NA	59733965	59782591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
45138	chr19	-	2618	19	NNC	ENSMUSG00000024943.10	novel	3448	24	NA	NA	-27	-3727	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	147.955782517098	1	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAGGCAAGTATGCAACCT	NA	False	NA	NA	False	NA	NA	NA	23251209	23195825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23195895_23199863_23199998_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243085_23246101_23246233_23250997
45142	chr3	+	2875	4	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	10776	1204	10776	-1204	3prime_fragment	FALSE	canonical	3	470	junction_1	22.4499443206436	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTCTTCCGCATGTTTAT	NA	False	NA	NA	False	NA	NA	NA	104556759	104564574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104556834_104558201_104558346_104560057_104560904_104562763
45143	chr9	+	1514	15	NNC	ENSMUSG00000041506.16	novel	725	7	NA	NA	-908	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	355.234680980656	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGTTCTCCCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	106352253	106362614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_106352357_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
45144	chr1	+	1819	14	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-25	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	544.511278619992	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGGCAGTTTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	59724104	59750663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742090_59743830_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
45145	chr19	-	2552	1	NIC	ENSMUSG00000040018.10	novel	4798	9	NA	NA	5998	-6414	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTACTTCCCAAAGG	5096	False	NA	NA	False	NA	NA	NA	43735441	43732889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_43732900_43735400
45147	chr8	+	2246	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	750	0	-750	multi-exon	FALSE	canonical	3	562	junction_2	45.5	484	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGCAGTCCTTCGACTC	NA	False	NA	NA	False	NA	NA	NA	84334821	84338532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84335172_84336442_84337024_84337217
45148	chr7	-	2013	13	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	18	junction_9	161.274352166321	1	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976595	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973146_125974238_125974376_125975845_125975912_125976008_125976218_125976289
45149	chr10	-	1445	2	Antisense	novelGene_ENSMUSG00000046687.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	50	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACGGCGGAGCAGGCTTG	NA	False	NA	NA	False	NA	NA	NA	61908359	61906810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_61908172_61908275
45150	chr15	+	3392	12	FSM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	50	7	50	-7	multi-exon	TRUE	canonical	3	199	junction_6	19.3826198026279	124	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGACAGTGTCATGTTC	NA	False	NA	NA	False	NA	NA	NA	79575095	79605673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79575300_79578356_79578469_79591192_79591374_79591895_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795_79601975_79603228_79603430_79604210
45151	chr4	+	2559	17	NNC	ENSMUSG00000095567.9	novel	2785	19	NA	NA	-195	-190	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	607.756835497348	1	31	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	156321480	156331870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325879_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
45152	chr5	+	2657	25	NNC	ENSMUSG00000029176.14	novel	3854	28	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	123.643746472139	1	62	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCATACTCTGTTCCA	NA	False	NA	NA	False	NA	NA	NA	52991370	53024076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999143_52999357_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
45153	chr14	+	1414	9	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19437	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	295.938654960787	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAAGCTTATGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	122514889	122639640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122514996_122517493_122517655_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
45154	SIRV3	+	2079	7	NNC	SIRV3A	novel	1083	8	NA	NA	-8	-124	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTATTTATGTTGATTCGGT	NA	False	NA	NA	False	NA	NA	NA	1955	8813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2016_4617_4757_6057_6959_7020_7720_7833_7981_8124_8200_8755
45155	chr2	-	2919	3	Antisense	novelGene_ENSMUSG00000001998.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTGATACTTCTTCCC	597	False	NA	NA	False	NA	NA	NA	126912515	126901129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_126903942_126904431_126904450_126912426
45156	chr2	-	3030	8	NIC	ENSMUSG00000027082.16	novel	3614	8	NA	NA	149	-11	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	86.9949564571395	7	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCTTTTGATTTTAT	NA	False	NA	NA	False	NA	NA	NA	84304369	84271077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84273270_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
45157	chr7	-	2325	11	NNC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	81.6041665602927	133	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCTTTGGGGGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	19362376	19340149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361842_19361896_19362000
45158	chr8	-	1538	2	Genic_Genomic	ENSMUSG00000053560.6	novel	1524	1	NA	NA	-49768	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	763	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCGGCTTGTCTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	85439251	85387962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_85389484_85439234
45159	chrX	+	1131	8	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1031.92427739913	21	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52077015	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088057_52091108_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
45160	chr14	+	2140	12	NIC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	-1	0	intron_retention	FALSE	canonical	3	141	junction_9	16.6465443265721	191	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	52122401	52129325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
45161	chr16	+	3976	7	NNC	ENSMUSG00000022885.17	novel	4506	8	NA	NA	-358	-7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	3.77123616632825	16	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAATCTGCTGCTTCTC	8056	False	NA	NA	False	NA	NA	NA	23088020	23179091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_23088131_23136313_23136449_23139782_23140429_23147091_23147190_23173615_23173715_23174958_23175134_23176378
45162	chr1	-	3197	13	ISM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	111	8095	10	7903	5prime_fragment	FALSE	canonical	3	234	junction_5	31.6503247306494	45	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGCTGTCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	33853497	33808720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
45163	chrX	-	1137	7	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	670.491527827823	1	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGATATTGACTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	52759802	52744872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748911_52749009_52749789_52749908_52753460_52753824_52759728
45164	chr4	-	878	6	FSM	ENSMUSG00000055401.15	ENSMUST00000152098.8	952	6	1	73	1	10	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCAACAGCAGCATCATTA	NA	False	NA	NA	False	NA	NA	NA	148236596	148230538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
45165	SIRV1	-	1301	6	FSM	SIRV1A	SIRV103	1363	6	62	0	57	0	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10729	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
45166	chr9	+	4504	13	Intergenic	novelGene_1104	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	104	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTCCATTGAGACATGG	NA	False	NA	NA	False	NA	NA	NA	70332724	70383913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_70334389_70336829_70336940_70338214_70338308_70339217_70339310_70348034_70348167_70349556_70349707_70350683_70351033_70357567_70357828_70360786_70361100_70365105_70365301_70366271_70366434_70376634_70376768_70383062
45167	chr16	-	2484	18	NIC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8	58	intron_retention	FALSE	canonical	3	419	junction_17	130.844819469503	8	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTAAGTGCCCACGAGCC	NA	False	NA	NA	False	NA	NA	NA	8610164	8515456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
45168	chr5	+	3443	4	FSM	ENSMUSG00000056014.16	ENSMUST00000069862.11	3038	4	-32	-373	3	373	multi-exon	FALSE	canonical	3	19	junction_3	4.92160768674447	50	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTTTTAGTTTGTTTA	1810	False	NA	NA	False	NA	NA	NA	138621123	138647471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375
45169	chr10	-	2916	6	FSM	ENSMUSG00000033416.16	ENSMUST00000039796.14	3500	6	45	539	-38	3	multi-exon	FALSE	canonical	3	66	junction_3	9.3893556754444	86	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTAGCACCCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	75353170	75342655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75352987
45170	chr17	-	1066	5	ISM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	1600	6	1414	1	intron_retention	FALSE	canonical	3	1264	junction_4	61.2249948958757	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTCTTGACTCCCTTTG	5896	False	NA	NA	False	NA	NA	NA	36225681	36221276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383
45171	chr2	+	2462	15	NIC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	1	-739	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	288.726231462771	2	114	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATACTGCTGTCTTCAGCC	7220	False	NA	NA	False	NA	NA	NA	29779823	29811809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015
45173	chr7	+	2815	11	NIC	ENSMUSG00000109378.2	novel	2890	11	NA	NA	-14	0	intron_retention	FALSE	canonical	1	1	junction_9	250.990119327435	1164	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCTGCCTGTCCTCATT	NA	False	NA	NA	False	NA	NA	NA	30262754	30267383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519_30265807_30266173_30266362_30266567_30266926_30267005
45174	chr14	-	2001	2	ISM	ENSMUSG00000021953.15	ENSMUST00000168669.8	1041	7	4900	-188	1780	-117	3prime_fragment	FALSE	canonical	3	3611	junction_1	0	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCACTCCTGAGACTTAT	NA	False	NA	NA	False	NA	NA	NA	63732808	63729912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63730296_63731190
45175	chr7	+	1302	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	23	-6	23	-2	multi-exon	FALSE	canonical	3	1035	junction_3	83.107694522763	625	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTATTTTGAGTCCTT	2956	False	NA	NA	False	NA	NA	NA	3697544	3704009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
45177	chr1	+	2249	12	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	0	-42	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	266.524183697967	4	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATGATTGCCATTGAAAA	NA	False	NA	NA	False	NA	NA	NA	42890435	42944800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42935720_42936637_42937599_42937769_42938600_42938710_42942454_42942625_42944564
45178	chr9	+	2203	11	NNC	ENSMUSG00000001833.18	novel	2533	14	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	600.5479164896	1	93	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATGTTGTGATGTAAC	NA	False	NA	NA	False	NA	NA	NA	25176689	25219843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25176793_25188839_25188947_25197963_25198065_25199482_25199619_25204980_25205099_25207690_25207784_25209107_25209182_25212673_25212834_25215012_25215149_25217421_25217562_25218808
45179	chr6	+	3073	2	FSM	ENSMUSG00000107761.2_ENSMUSG00000067714.14	ENSMUST00000171989.3	1458	2	-47	-1568	-47	11	multi-exon	FALSE	canonical	1	2	junction_1	0	57	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAAGCACACATTCCAT	8348	False	NA	NA	False	NA	NA	NA	125048192	125061003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125048362_125058099
45180	chrX	+	918	7	NNC	ENSMUSG00000008682.14	novel	799	7	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	1	185	junction_4	3732.38086436348	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGCTTATGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73314462	73316732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315687_73315784_73315924_73316277_73316441_73316520
45181	chr2	+	2693	18	NNC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	-39	-205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.0492862697598	4	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTTATCCAGAAGAGTAA	NA	False	NA	NA	False	NA	NA	NA	132658104	132685610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132658228_132658292_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
45184	chr10	+	1871	11	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	24	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	215.526912472665	17	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTGCAGAAGTTTGTAAA	1032	False	NA	NA	False	NA	NA	NA	127851088	127865853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851897_127855334_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
45185	chr1	+	1687	9	NNC	ENSMUSG00000038235.5	novel	2518	10	NA	NA	14	360	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	106.999707943527	5	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACTTCTTTTTTGTTGA	NA	False	NA	NA	False	NA	NA	NA	171265116	171291573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289485_171290452_171290498_171290829
45186	chr17	-	2575	5	NIC	ENSMUSG00000024459.19	novel	2459	4	NA	NA	8	278	intron_retention	FALSE	canonical	3	8	junction_4	96.6394717493841	587	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTAAGTGAGACTGGAAA	NA	False	NA	NA	False	NA	NA	NA	37300421	37294674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_37295995_37298307_37298416_37298546_37298823_37299396_37299673_37299826
45187	chr15	+	1353	5	NNC	ENSMUSG00000063236.7	novel	1043	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	105.762410619274	477	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	NA	False	NA	NA	NA	76832704	76834929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76832745_76832828_76833120_76833267_76833483_76833564_76833891_76834448
45188	chr2	-	2138	10	NIC	ENSMUSG00000041975.18	novel	2347	10	NA	NA	-22	-3	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	29.4505234814822	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGCTTTTGTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	70885949	70794907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812312_70823827_70823920_70848563_70848719_70885714
45189	chr7	-	1486	10	NNC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	1	-263	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_2	371.517940679738	49	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCAGTTCAGTATTCTGT	NA	False	NA	NA	False	NA	NA	NA	46569716	46539037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46539453_46540669_46540789_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
45190	chr6	+	1466	5	Antisense	novelGene_ENSMUSG00000030057.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACACGCCGCTGCGCA	9250	False	NA	NA	False	NA	NA	NA	87820224	87828009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_87821116_87822085_87822295_87822441_87822539_87822636_87822790_87827893
45191	chr4	-	1748	8	NNC	ENSMUSG00000029022.19	novel	1909	9	NA	NA	-21	-25	intron_retention	FALSE	non_canonical	0	0	junction_2	111.016086350454	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAATAAAGCTCAGGGTC	NA	False	NA	NA	False	NA	NA	NA	147953001	147945272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147945543_147945810_147945913_147946738_147946800_147946894_147947407_147949645_147949728_147950111_147950472_147950691_147950877_147952825
45193	chr2	-	1104	5	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	594.803538994179	15	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	NA	False	NA	NA	NA	25114668	25112175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25112443_25112886_25113381_25113945_25114057_25114135_25114245_25114545
45194	chr17	+	1902	6	NIC	ENSMUSG00000038880.14	novel	1884	6	NA	NA	-17	-11	intron_retention	FALSE	canonical	3	182	junction_3	226.582788401944	1669	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAAACCCTTGTGCGCT	NA	False	NA	NA	False	NA	NA	NA	25114072	25116465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25114463_25114635_25114679_25114761_25115534_25115601_25115733_25115825_25115928_25116001
45195	chr9	-	241	2	ISM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	369	90	369	-90	3prime_fragment	FALSE	canonical	3	178157	junction_1	0	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGATATTCCTGGATCC	NA	False	NA	NA	False	NA	NA	NA	78275090	78274423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78274577_78275002
45196	chr7	-	579	4	NIC	ENSMUSG00000030697.8	novel	865	5	NA	NA	-34	-515	intron_retention	FALSE	canonical	3	1828	junction_3	360.342738082633	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTTTGTGGACCGTGGT	5036	False	NA	NA	False	NA	NA	NA	126391702	126387350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126387607_126388195_126388248_126391232_126391396_126391594
45199	chr17	+	3284	13	FSM	ENSMUSG00000024180.15	ENSMUST00000025010.14	3464	13	180	0	153	0	multi-exon	FALSE	canonical	3	294	junction_7	42.026446699932	247	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGTCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	26332469	26342228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339512_26339660_26340513_26340631_26340911
45200	chr9	-	2056	9	NNC	ENSMUSG00000032113.17	novel	3797	12	NA	NA	-1103	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	201.667695417486	2	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGGTCCTGTATTCCTTT	3458	False	NA	91	True	NA	NA	NA	36635144	36620732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629715_36630787_36631040_36635039
45201	chr4	-	2722	10	NNC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	20	-2	intron_retention	FALSE	canonical	1	1	junction_9	16.9538225414044	2	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTCAGTGTCTGTTCC	8723	False	NA	NA	False	NA	NA	NA	152112074	152104234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152107265_152110234_152110477_152110844_152111517_152112023
45202	chr5	-	4169	17	NIC	ENSMUSG00000036553.17	novel	4549	18	NA	NA	-20	-6	combination_of_known_splicesites	FALSE	canonical	2	4	junction_9	31.8442866735934	1	149	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCAACTCTGGTATC	NA	False	NA	NA	False	NA	NA	NA	35886376	35854534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871456_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35881257_35881489_35886290
45203	chr2	-	2707	16	Antisense	novelGene_ENSMUSG00000098904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	135	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCCACCGGAGCGCTCTG	NA	False	NA	NA	False	NA	NA	NA	31507530	31462922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_31462964_31473164_31473278_31484832_31484905_31485261_31485332_31486603_31486664_31488549_31488711_31490462_31490554_31493220_31493333_31494634_31494727_31495252_31495353_31498093_31498238_31501588_31501752_31502494_31502569_31502846_31502919_31503040_31503090_31506237
45204	chr9	-	1332	4	FSM	ENSMUSG00000097195.11	ENSMUST00000190033.4	1408	4	75	1	0	-1	multi-exon	FALSE	canonical	3	405	junction_2	320.936476926856	641	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATTCAATTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	88404941	88403105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404435_88404536
45205	chr1	+	2547	11	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	20	-265	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	207.40658138063	1	117	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAAATCTTTCTCAAAC	NA	False	NA	NA	False	NA	NA	NA	167177579	167195836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181998_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
45206	chr14	-	1806	1	NIC	ENSMUSG00000021917.17	novel	1008	4	NA	NA	23	-10	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAACTTGTACTACATTT	NA	False	NA	NA	False	NA	NA	NA	30723600	30721794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30721800_30723600
45207	chr2	-	1811	5	NIC	ENSMUSG00000027566.16	novel	1157	7	NA	NA	2	-4	intron_retention	FALSE	canonical	3	4468	junction_3	540.680763020102	34	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTCTGTGATGAGAACC	NA	False	NA	NA	False	NA	NA	NA	179684201	179678170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179678794_179679175_179679981_179680517_179680643_179681145_179681273_179684070
45208	chr7	+	2603	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	-211	10	-170	-7	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	298	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAATATATGTTTCTGAC	NA	False	NA	NA	False	NA	NA	NA	127070450	127075920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
45209	chr17	-	1356	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	466	565	35	291	multi-exon	FALSE	canonical	3	126	junction_3	5.45527267879434	53	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTATCTCCTACCCCA	NA	False	NA	NA	False	NA	NA	NA	27247517	27239348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
45210	chr11	-	1780	7	NIC	ENSMUSG00000042032.14	novel	2053	7	NA	NA	19	-10	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	204.398032171436	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCATGTAACACTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	40585795	40570150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576141_40578427_40578623_40585629
45211	chr8	-	1989	2	ISM	ENSMUSG00000003848.15	ENSMUST00000170796.8	2137	6	4166	0	1270	0	3prime_fragment	FALSE	canonical	3	543	junction_1	0	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	NA	False	NA	NA	NA	108144028	108139117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_108139816_108142737
45212	chr4	-	1801	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	9	0	9	0	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	308	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	10001	False	NA	NA	False	NA	NA	NA	129590622	129570147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
45213	chr10	+	2505	6	ISM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	4570	4	-199	-4	3prime_fragment	FALSE	canonical	3	1130	junction_4	103.567176267387	1	116	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACTTGCCTCTCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	61520658	61529072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
45214	chrX	-	1963	4	FSM	ENSMUSG00000025040.14	ENSMUST00000177213.8	1032	4	21	-952	4	-8	multi-exon	TRUE	canonical	3	209	junction_3	16.9901932498329	675	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGAAGTGATTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	17437859	17422810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541
45216	chr11	+	1016	1	Genic_Genomic	ENSMUSG00000083899.3	novel	NA	NA	NA	NA	1944	505	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77186213	77187229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_77186200_77187200
45218	chr3	+	2020	5	NIC	ENSMUSG00000001418.14	novel	4219	6	NA	NA	0	95	intron_retention	FALSE	canonical	3	936	junction_3	27.9676152004421	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTTGTGAGTCTTTTGT	4032	False	NA	NA	False	NA	NA	NA	88232366	88235983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
45220	chr14	-	3876	11	FSM	ENSMUSG00000022180.8	ENSMUST00000022787.8	4084	11	202	6	202	-6	multi-exon	FALSE	canonical	0	0	junction_10	10.5375518978556	5	108	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGAGTGATGGAGTTAAT	NA	False	NA	NA	False	NA	NA	NA	55019185	54959671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54995895_54996048_54996997_54997203_55018636
45221	chr12	+	975	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_3	1245.16007404671	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTATAAACATTGTTGGG	4769	False	NA	NA	False	NA	NA	NA	71021443	71041268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031235_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
45222	chr11	+	2462	2	ISM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	33	3409	-20	-3086	5prime_fragment	FALSE	canonical	3	60	junction_1	0	6	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGTCCCTCCTGGGTTGT	8370	False	NA	NA	False	NA	NA	NA	78356555	78359362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_78356832_78357176
45223	chr18	-	1766	3	NIC	ENSMUSG00000006050.13	novel	1979	5	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	1172	junction_2	197	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCCATTCTGATGTCAG	NA	False	NA	NA	False	NA	NA	NA	36803341	36800302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_36801902_36803056_36803183_36803300
45225	chr15	-	1408	5	ISM	ENSMUSG00000036606.18	ENSMUST00000109331.9	6497	38	75	11045	75	-1703	5prime_fragment	FALSE	canonical	0	0	junction_4	124.373429638327	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCTTAAGGTACTGGTCG	9218	False	NA	NA	False	NA	NA	NA	89064916	89050796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_89050970_89051143_89052231_89054771_89054821_89055269_89055320_89064867
45228	chr8	-	1739	14	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-14	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.4310270305933	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578654	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571424_106571474_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
45229	chr11	-	2192	2	FSM	ENSMUSG00000020910.17	ENSMUST00000148379.2	428	2	0	-1764	0	-1704	multi-exon	FALSE	canonical	2	8	junction_1	0	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGCAGACAGTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	66943417	66930798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_66932934_66943360
45230	chr5	-	2829	14	NNC	ENSMUSG00000086697.3	novel	2515	5	NA	NA	11604	27897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	15	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGACTTCCTATCACCGACT	5387	False	NA	NA	False	NA	NA	NA	24025291	23992718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23992880_23993286_23993334_23999300_23999490_24005596_24005833_24010305_24010480_24010566_24010719_24012036_24012192_24014779_24014892_24014965_24015193_24015894_24016030_24016704_24016908_24020649_24020704_24022074_24022151_24024383
45231	chr4	+	1771	4	NIC	ENSMUSG00000039693.12	novel	1378	3	NA	NA	24	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	136.514549489138	457	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	26	False	NA	NA	False	NA	NA	NA	48540102	48561918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_48540272_48549921_48549998_48552379_48552831_48560843
45233	chr13	-	1217	7	Fusion	ENSMUSG00000060147.16_ENSMUSG00000052180.16	novel	930	7	NA	NA	0	-101	multi-exon	FALSE	canonical	0	0	junction_1	163.208881158131	91	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCAGTATTTCATCCTTT	8477	False	NA	NA	False	NA	NA	NA	34119961	34063900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_34064316_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
45234	chr8	+	2538	5	NNC	ENSMUSG00000059897.6	novel	3001	4	NA	NA	52	-141	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	46.0217339960154	1	108	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGTCTTTCTGTGAGTA	7262	False	NA	NA	False	NA	NA	NA	69661751	69683047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69661812_69678994_69679122_69679323_69679374_69680494_69680664_69680915
45235	chr3	-	3604	15	FSM	ENSMUSG00000028149.13	ENSMUST00000098574.9	3669	15	52	13	-1	-5	multi-exon	FALSE	canonical	3	58	junction_10	10.7892614791424	67	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACTACAGTGAGATTAC	NA	False	NA	NA	False	NA	NA	NA	138780910	138631675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138689482_138689630_138721306_138721433_138727573_138727697_138756241_138756350_138780796
45236	chr1	+	3238	10	NNC	ENSMUSG00000041684.12	novel	3570	10	NA	NA	65	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	22.6813677816053	1	77	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCCTATGAATTTTAATG	NA	False	NA	NA	False	NA	NA	NA	44159203	44183674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_44159435_44165425_44166027_44166797_44166929_44167887_44167984_44168419_44168525_44168742_44168834_44176143_44176277_44177732_44177820_44180937_44181035_44182008
45237	chr7	+	1844	11	NNC	ENSMUSG00000030523.19	novel	2575	11	NA	NA	-7	16	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	345.477698267196	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTATGTTTCATGAAGCT	NA	False	NA	NA	False	NA	NA	NA	63835290	63861191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849019_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
45238	chr17	-	3159	10	FSM	ENSMUSG00000046329.15	ENSMUST00000040280.14	3362	10	194	9	150	-9	multi-exon	FALSE	canonical	3	34	junction_6	5.45916377623922	46	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTATTACTGTTGATTTT	NA	False	NA	NA	False	NA	NA	NA	57366669	57350719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_57352664_57354185_57354337_57359681_57359850_57360240_57360349_57360546_57360700_57360783_57360943_57362273_57362386_57363581_57363670_57365107_57365235_57366520
45239	chr2	+	1504	10	FSM	ENSMUSG00000027331.16	ENSMUST00000123104.2	839	10	-90	-575	-26	1	multi-exon	FALSE	canonical	2	5	junction_7	167.506403046953	1222	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATATTCTGACTAACACT	NA	False	NA	NA	False	NA	NA	NA	118644686	118665124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118661292_118661451_118662033_118662109_118664480
45240	chr15	+	1411	9	NNC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	-2	-892	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	426.040472695964	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCAGTCTGCTTTATT	630	False	NA	NA	False	NA	NA	NA	78915071	78921661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78915321_78918130_78918193_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
45241	chr5	+	1887	9	Antisense	novelGene_ENSMUSG00000029545.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGCCTGGGCCACGCCCA	NA	False	NA	NA	False	NA	NA	NA	115248404	115257384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_115249065_115249151_115249209_115249373_115249474_115249695_115250086_115250297_115250448_115250820_115250936_115251122_115251271_115255621_115255788_115257283
45244	chr10	+	1912	13	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	38	0	intron_retention	FALSE	canonical	3	611	junction_4	32.9497723816114	2	60	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCAGAGTTTCAAAATA	9254	False	NA	NA	False	NA	NA	NA	127102293	127117819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
45245	chr12	-	1743	6	FSM	ENSMUSG00000045679.15	ENSMUST00000222203.2	1706	6	6	-43	6	-7	multi-exon	FALSE	canonical	3	14	junction_2	66.9943281181325	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGAATTCTTAAGCTGTC	NA	False	NA	NA	False	NA	NA	NA	17050062	17038655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_17039897_17042278_17042321_17045614_17045673_17047634_17047705_17047774_17047858_17049813
45246	chr6	-	1817	7	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	9	-4	intron_retention	FALSE	canonical	3	429	junction_6	64.9095524557056	58	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGGGGGTTGGATCTT	2035	False	NA	NA	False	NA	NA	NA	83031414	83028250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83030052_83030309_83030505_83030593_83030799_83030901
45247	chr1	+	1338	9	NNC	ENSMUSG00000053332.14	novel	904	10	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_6	1869.76893208091	62	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864882_160865074_160865608_160865794_160865843_160866026
45248	chr7	+	1640	8	NNC	ENSMUSG00000025510.15	novel	1865	8	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_3	112.036619377919	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCGAATCAGCTTGCTG	NA	False	NA	NA	False	NA	NA	NA	141047313	141051385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141047498_141048331_141048460_141049167_141049199_141049534_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
45250	chr4	+	1793	10	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	12	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	243.028119086386	7	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAGAAAATGCTGAGCCC	6636	False	NA	NA	False	NA	NA	NA	135975295	136002204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135975429_135981056_135981120_135981775_135982600_135985234_135985298_135991757_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
45252	chr10	-	2222	7	NIC	ENSMUSG00000019795.18	novel	2491	8	NA	NA	10	0	combination_of_known_splicesites	TRUE	canonical	2	2	junction_1	278.754023389001	2	88	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	NA	False	NA	NA	NA	7539015	7505144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_7506741_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
45253	chr11	+	2462	8	NNC	ENSMUSG00000018347.17	novel	2302	8	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	18.4446220246622	159	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTGTAGCTGCCTTG	NA	False	NA	NA	False	NA	NA	NA	65698044	65720065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_65698088_65698655_65698891_65705190_65705678_65706743_65706952_65707314_65707407_65712755_65712841_65713650_65713765_65718867
45254	chr17	+	2228	13	FSM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	-4	3	-4	-2	multi-exon	FALSE	canonical	3	62	junction_12	10.7625895273086	195	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTAGCATGTCTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	32755538	32770768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
45255	chr7	-	3095	10	NNC	ENSMUSG00000039194.17	novel	2142	9	NA	NA	-1058	-7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_9	6.28539361054709	89	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCACACTCTTTCATG	NA	False	NA	NA	False	NA	NA	NA	79037854	79024625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79025467_79025644_79025756_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033711_79034406_79034528_79036436_79037545_79037641
45256	chr1	+	1220	1	ISM	ENSMUSG00000037434.8	ENSMUST00000044954.7	5244	2	5248	13	4759	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	80	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATTCTAATTTCTATTTT	NA	False	NA	NA	False	NA	NA	NA	191644126	191645346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_191644100_191645300
45257	chr19	-	4534	16	NNC	ENSMUSG00000035173.15	novel	6445	16	NA	NA	134	1289	intron_retention	FALSE	non_canonical	0	0	junction_3	26.9999176953478	2	135	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAAACTCTGCATTATT	5331	False	NA	NA	False	NA	NA	NA	56810488	56777673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_56779479_56780372_56780593_56781727_56781939_56783525_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790328_56790422_56795397_56795518_56796409_56796623_56797624_56797750_56798670_56798798_56801422_56802122_56810419
45258	chr9	+	1931	4	NIC	ENSMUSG00000032383.8	novel	892	5	NA	NA	21	-6	intron_retention	FALSE	canonical	3	2090	junction_3	92.167721512951	7	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATAGCTTGGGTGTGGG	1595	False	NA	NA	False	NA	NA	NA	65967533	65973899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65968863_65970270_65970365_65972768_65972954_65973576
45259	chr9	+	912	7	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	7040.97357535795	238	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084370_64085639
45260	chr7	+	4962	24	Antisense	novelGene_ENSMUSG00000108493.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	94	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTGAGCCCCGCCTT	NA	False	NA	NA	False	NA	NA	NA	71728618	71956393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_71730608_71732836_71732933_71739917_71740031_71752892_71753001_71771444_71771487_71776884_71777007_71810885_71811010_71812948_71813019_71814355_71814460_71833552_71833651_71835507_71835622_71850105_71850190_71852038_71852219_71861340_71861474_71863691_71863857_71873768_71873805_71877727_71877839_71878219_71878295_71879073_71879219_71895207_71895306_71896846_71896919_71908846_71909380_71953627_71953805_71956220
45262	chr6	-	2283	5	FSM	ENSMUSG00000030222.14	ENSMUST00000117919.8	2262	5	-18	-3	-18	-3	multi-exon	FALSE	canonical	3	37	junction_2	7.44983221287567	158	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTGGAATTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	137146748	137031825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_137033539_137034810_137034885_137043996_137044054_137141932_137142101_137146477
45263	chr15	+	1584	4	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2887	-5024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	82	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCGCCCGCTCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	98829318	98832319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98830446_98830575_98830722_98830872_98831079_98832214
45264	chr1	-	3741	19	ISM	ENSMUSG00000003134.11	ENSMUST00000054462.11	4451	20	52601	370	-33523	5	3prime_fragment	TRUE	canonical	3	38	junction_12	8.01079518563375	26	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTTTAAAATGTCATTTT	2690	False	NA	NA	False	NA	NA	NA	39465235	39410942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_39411868_39412807_39412906_39413162_39413253_39415504_39415571_39415958_39416200_39418535_39418605_39419075_39419175_39419308_39419439_39420357_39420644_39424201_39424320_39425078_39425294_39428388_39428540_39430197_39430369_39431137_39431336_39433145_39433354_39441763_39442005_39444371_39444601_39445832_39445952_39465148
45265	chr13	+	5031	3	NNC	ENSMUSG00000091387.3	novel	5087	3	NA	NA	-285	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	5.5	17	65	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTCAAATCCAACTCCTC	NA	False	NA	NA	False	NA	NA	NA	97060911	97087408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97061122_97072387_97072505_97082704
45266	chr11	-	2910	18	ISM	ENSMUSG00000034471.13	ENSMUST00000041684.11	4929	20	80	2304	80	-1487	5prime_fragment	FALSE	canonical	3	37	junction_7	8.36287727178725	17	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCCACGCTTACTCGGA	4200	False	NA	NA	False	NA	NA	NA	115704376	115692312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_115692968_115693106_115693246_115693373_115693476_115693554_115693666_115693824_115693914_115694037_115694099_115694183_115694306_115694407_115694670_115695301_115695397_115695524_115695634_115695906_115696016_115697129_115697261_115697359_115697456_115697544_115697691_115698089_115698188_115698664_115698717_115702712_115703209_115704339
45270	chr7	+	3016	12	ISM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	28085	490	16293	4	3prime_fragment	FALSE	canonical	3	710	junction_2	96.4500470204547	1	164	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTGATCTGATTGCAA	NA	False	NA	NA	False	NA	NA	NA	109645565	109655326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
45271	chrX	+	2621	1	FSM	ENSMUSG00000050148.10	ENSMUST00000060714.10	3344	1	719	4	719	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	225	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCTCTTTTATTTTGCC	8051	False	NA	NA	False	NA	NA	NA	152281941	152284562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_152281900_152284600
45272	chr12	+	1536	11	NNC	ENSMUSG00000021115.16	novel	1742	15	NA	NA	-10	-12	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_8	420.568234654021	19	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGTCTTTTACACAAGC	NA	False	NA	NA	False	NA	NA	NA	105976564	106041656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976618_106002798_106002964_106009095_106009152_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037672_106037901_106039877_106039938_106041265
45273	chr4	+	1978	15	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	352.109850669895	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGGTTTGGAAACTAGT	9173	False	NA	NA	False	NA	NA	NA	152018250	152065679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152055313_152055388_152057936_152058115_152058240_152058303_152058653_152058775_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
45274	chr15	-	1630	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	155	18	155	-18	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	4	89	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTCCCTGTCTTAAAAGT	NA	False	NA	NA	False	NA	NA	NA	98851429	98847735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
45275	chr15	-	1957	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	199.638995176448	7	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	NA	False	NA	NA	NA	83033525	83010178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83010892_83012171_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
45276	chr2	+	2008	15	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	45	-73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	824.94774417065	1	90	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATGTTGTATTTGAAAAG	NA	False	NA	NA	False	NA	NA	NA	157125547	157167903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157125683_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157163662_157163793_157167630
45277	chr17	-	463	3	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	610	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5465	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTATACAGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	45880052	45878711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878784_45879366_45879489_45879783
45278	chr5	+	3876	6	ISM	ENSMUSG00000036087.19	ENSMUST00000144843.8	4833	8	34347	9	152	-9	3prime_fragment	FALSE	canonical	3	204	junction_2	24.9367199126108	140	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATCTATATTTATCTTC	NA	False	NA	NA	False	NA	NA	NA	73105993	73136163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_73106070_73112669_73112832_73114635_73114996_73115491_73115630_73131873_73132190_73133339
45280	chr10	+	1887	8	NNC	ENSMUSG00000019810.16	novel	2007	8	NA	NA	-28	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	57.5719602953113	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCCCTCATATTCATTT	NA	False	NA	NA	False	NA	NA	NA	13376799	13391290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390551_13390860
45282	chr15	-	2090	8	ISM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	19	1785	0	-583	5prime_fragment	FALSE	canonical	3	267	junction_4	10.9916480352408	63	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTAGAAGGCCCTTTTGAA	1363	False	NA	NA	False	NA	NA	NA	82223008	82215517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
45283	chr13	-	1428	9	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-10	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1497.81774592238	1	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACATAGCTTAACTCATT	NA	False	NA	NA	False	NA	NA	NA	100923004	100916078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916281_100916578_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922123_100922240_100922412_100922889
45284	chr8	-	2220	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	-23	2	-18	-2	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	180	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCTGGTGTCCTGTTCT	9239	False	NA	NA	False	NA	NA	NA	84831415	84823702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
45285	chr1	-	1263	7	NIC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	1224	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	NA	False	NA	NA	NA	44141598	44125772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
45288	chr8	-	1903	9	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	-5	-3	combination_of_known_junctions	FALSE	canonical	1	23	junction_8	169.433615318803	45	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGCTAGAATATATTGTT	NA	False	NA	NA	False	NA	NA	NA	110335310	110320111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110335171
45291	chr17	+	1502	6	NNC	ENSMUSG00000046711.17	novel	1717	6	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2094.81898024626	2	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAAGGAGCATTCA	NA	False	NA	NA	False	NA	NA	NA	27775595	27782648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781411_27781864_27781961
45292	chr2	-	2587	1	ISM	ENSMUSG00000075376.11	ENSMUST00000112934.8	8948	22	50248	0	4916	0	mono-exon	FALSE	NA	NA	NA	NA	NA	78	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTTTCTTAGTGTCAAT	NA	False	NA	NA	False	NA	NA	NA	37262667	37260080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_37260100_37262700
45294	chr5	+	3203	13	NNC	ENSMUSG00000029345.14	novel	3560	14	NA	NA	-22	-4	intron_retention	FALSE	canonical	0	0	junction_11	34.1470472125092	3	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATTAGGAAGTATATGGG	NA	False	NA	NA	False	NA	NA	NA	112474264	112485935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_112474340_112475350_112475537_112475827_112476049_112477231_112477386_112477612_112477770_112478956_112479085_112479733_112479887_112480829_112481358_112481440_112481548_112482182_112482352_112482725_112482801_112483880_112484047_112484851
45296	chr11	-	2486	9	NNC	ENSMUSG00000025384.16	novel	3193	10	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	23.895606290697	30	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTCTGTGTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	120269558	120260390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120265242_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
45297	chr4	+	1326	6	NNC	ENSMUSG00000028797.21	novel	1519	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	279.690257248979	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3197	False	NA	NA	False	NA	NA	NA	129494493	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248_129501943_129502141
45298	chr4	+	1556	11	NNC	ENSMUSG00000028757.5	novel	2120	11	NA	NA	159	-357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	702.849799032482	14	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGGACACTGTGCCAGAGC	NA	False	NA	NA	False	NA	NA	NA	138032199	138039582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038281_138038749_138038842_138038950_138039058_138039144
45299	chr4	-	1402	5	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	4	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	945.605097278986	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCCTTTTATATATAAAAAA	3	True	NA	NA	False	NA	NA	NA	41098179	41092768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41093993_41094260_41094385_41094700_41094727_41098072
45300	chr15	+	1492	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-5	-9	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	485	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTTGAACCCCTTGTT	NA	False	NA	NA	False	NA	NA	NA	102427155	102432100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
45301	chrX	+	3315	12	FSM	ENSMUSG00000031112.11	ENSMUST00000033444.11	3639	12	325	-1	-69	1	multi-exon	TRUE	canonical	3	20	junction_11	5.29618605950164	39	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCTCGATGTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	49930248	49981975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_49930424_49930555_49930713_49959132_49959364_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
45302	chr4	+	1352	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174819.8	652	4	3	-703	-2	0	multi-exon	FALSE	canonical	3	97	junction_2	255.064697674923	11	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3194	False	NA	NA	False	NA	NA	NA	129494490	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129494525_129494775_129494928_129500879_129500973_129501248
45303	chr6	+	4708	3	ISM	ENSMUSG00000030259.13	ENSMUST00000032388.5	1733	4	7008	-3493	-4553	-2	3prime_fragment	FALSE	canonical	2	4	junction_2	7	37	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACAATTGTTGCTTGCTT	NA	False	NA	NA	False	NA	NA	NA	145761116	145766803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_145761669_145762223_145762369_145762792
45304	chr15	+	2498	13	NIC	ENSMUSG00000032783.10	novel	2255	14	NA	NA	7	2	intron_retention	FALSE	canonical	3	68	junction_9	8.01387685344754	22	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGGGGCAGCCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	98972874	98981286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
45306	chr17	-	1719	13	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-3	-1323	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	210.587669787827	1	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTCCCGTTTGCCAGCT	NA	False	NA	NA	False	NA	NA	NA	28841428	28811191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28821627_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
45308	chr1	-	816	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-1	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2482.96572782541	22	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174627	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16172972_16173391_16173559_16173733_16173909_16174588
45309	chr11	+	1280	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	49	-17540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9480	False	NA	NA	False	NA	NA	NA	88861126	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861466_88861719_88861846_88863425
45310	chr10	+	2852	4	NNC	ENSMUSG00000061371.8	novel	2360	4	NA	NA	-2	410	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	18.1536650722535	2251	45	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCTGTGTGTTCATTCT	NA	False	NA	NA	False	NA	NA	NA	81883954	81900989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81884064_81894203_81894331_81895350_81897000_81900022
45311	chr5	+	2343	13	NNC	ENSMUSG00000004952.14	novel	3057	20	NA	NA	3138	0	intron_retention	FALSE	canonical	0	0	junction_1	19.8976548031839	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAATGCTGAGGTGTTGGG	NA	False	NA	NA	False	NA	NA	NA	136127581	136140709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_136127717_136129755_136129874_136130097_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
45312	chrX	-	2356	4	NNC	ENSMUSG00000035427.19	novel	2403	3	NA	NA	-35	5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	13.589211407093	85	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTCTTTGCTCA	NA	False	NA	NA	False	NA	NA	NA	85299860	85293854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_85294720_85294806_85296089_85298945_85299028_85299733
45313	chr11	+	1934	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	21	-6	-15	4	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	344	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTGAGTATTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	51153961	51172597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
45314	chr15	+	2072	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	40	2	40	-1	multi-exon	FALSE	canonical	3	579	junction_9	64.3868516598433	1	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGCACTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	81900609	81924284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
45315	chr7	+	3578	11	NIC	ENSMUSG00000060508.17	novel	3346	10	NA	NA	-21	14	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	7.39256383131049	26	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGAATGTGTTGTAGTGG	NA	False	NA	NA	False	NA	NA	NA	19725368	19796879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_19725614_19741948_19742019_19753060_19753368_19757035_19758615_19760440_19760606_19762379_19762545_19776275_19776444_19779686_19779858_19782606_19782778_19783348_19783520_19796513
45316	chr11	+	2630	11	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	-17	-7	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_10	128.136645812195	19	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCAGCCTCCGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	102139690	102156006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102154746_102154820_102155460
45317	chr11	+	2118	15	FSM	ENSMUSG00000025372.17	ENSMUST00000106233.2	2442	15	324	0	-29	0	multi-exon	TRUE	canonical	2	2	junction_13	13.1158495799579	166	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	119833912	119897608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119893863_119893912_119897184
45318	chr18	+	1617	11	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	540.749147017358	3	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAATTAAAGATGTAATCA	6432	False	NA	-90	True	NA	NA	NA	77126250	77240819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126411_77207765_77207843_77214552_77214688_77216651_77216762_77217756_77217820_77220786_77220948_77221629_77221764_77223475_77223649_77232781_77232839_77237756_77237795_77240310
45319	chr15	+	4647	28	FSM	ENSMUSG00000037003.17	ENSMUST00000230474.2	4637	28	-18	8	-18	1	multi-exon	FALSE	canonical	2	5	junction_10	3.82361444641615	27	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTTTGAGGAGTTGAT	NA	False	NA	NA	False	NA	NA	NA	102012841	102024827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102013074_102013773_102013812_102014678_102014718_102015025_102015065_102015223_102015274_102015449_102015622_102015916_102015968_102016236_102016360_102016445_102016511_102017289_102017374_102017755_102017869_102017947_102018009_102018134_102018211_102018905_102019036_102019113_102019180_102019305_102019420_102019516_102020729_102020863_102021012_102021101_102021668_102021770_102021861_102022144_102022271_102022475_102022569_102022695_102022774_102022905_102022984_102023424_102023594_102023995_102024065_102024171_102024202_102024292
45320	chr6	+	2971	3	FSM	ENSMUSG00000052751.17	ENSMUST00000135151.3	3057	3	84	2	44	-2	multi-exon	FALSE	canonical	3	22	junction_1	9.5	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGCTGGTGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	48570917	48576013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48570987_48571795_48571911_48573226
45321	chr9	-	2357	5	Antisense	novelGene_ENSMUSG00000032349.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAGGGGAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	77891789	77883064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_77883143_77884027_77884202_77887106_77887229_77888751_77888885_77889939
45322	chr6	+	2121	15	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-15	-414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	405.713782695865	1	104	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGAGCGCCCCTTCCAGG	5422	False	NA	NA	False	NA	NA	NA	125108856	125121302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125108967_125109170_125109282_125110481_125110534_125110681_125110766_125111509_125111710_125114017_125114179_125114273_125114474_125114597_125114662_125116602_125116687_125116768_125116910_125117497_125117631_125117752_125117843_125117998_125118122_125118236_125118466_125120963
45324	chr14	+	1707	5	ISM	ENSMUSG00000021806.5	ENSMUST00000225791.2	3976	17	-4	27984	-4	-27984	5prime_fragment	FALSE	canonical	3	1333	junction_3	86.1608234640315	2	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGACAGGCCGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	19801347	19828214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063
45325	chr4	-	1474	6	Antisense	novelGene_ENSMUSG00000015247.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1284	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCCTCGCTTCCTGGTG	9761	False	NA	NA	False	NA	NA	NA	53022040	53011937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_53012046_53015012_53015225_53017047_53017206_53020179_53020330_53021108_53021195_53021280
45326	chr6	-	2985	18	FSM	ENSMUSG00000030309.17	ENSMUST00000072324.12	2952	18	-32	-1	-20	0	multi-exon	FALSE	canonical	3	19	junction_10	17.2566621205624	64	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	148797680	148743989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
45327	chr3	-	1385	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	-4	0	-4	0	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	25	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6096	False	NA	NA	False	NA	NA	NA	153618650	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
45328	chr1	+	1684	13	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-2	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	735.756238883202	1	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTTCTTTGTATTATA	NA	False	NA	NA	False	NA	NA	NA	59724141	59750648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731523_59740047_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744911_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
45329	chr14	+	926	4	ISM	ENSMUSG00000021770.12	ENSMUST00000022292.10	1574	6	45	9592	28	-9265	5prime_fragment	FALSE	canonical	3	20	junction_1	2.94392028877595	7	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCACTGTATTCTTGCTT	2659	False	NA	NA	False	NA	NA	NA	21800643	21833778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746
45330	chr14	+	1119	4	ISM	ENSMUSG00000021770.12	ENSMUST00000144061.2	1613	6	29613	-463	-11711	463	3prime_fragment	FALSE	canonical	3	27	junction_1	6.16441400296898	4	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGTGTGAGGTGACACGC	NA	False	NA	NA	False	NA	NA	NA	21830228	21843833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_21830250_21833746_21833865_21842471_21842623_21843004
45331	chr6	+	2180	10	FSM	ENSMUSG00000030284.12	ENSMUST00000032422.6	2306	10	124	2	-2	1	multi-exon	TRUE	canonical	3	165	junction_1	17.0945085399441	234	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAAAGCTTCAGTCTTAA	1581	False	NA	NA	False	NA	NA	NA	113460381	113470297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113461038_113461455_113461539_113465031_113465143_113465439_113465532_113466394_113466572_113466655_113466752_113468613_113468698_113468854_113468951_113469084_113469220_113469647
45333	chr4	-	3363	1	ISM	ENSMUSG00000041530.18	ENSMUST00000239428.2	7065	19	30036	11	4976	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	154	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTCTAAAGTGCAGTCT	6436	False	NA	NA	False	NA	NA	NA	126332178	126328815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_126328800_126332200
45334	chr18	+	3657	14	NNC	ENSMUSG00000033628.16	novel	3084	22	NA	NA	-44	-24012	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	48.6155063289616	5	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATCCTTGAGGGGCCAC	NA	False	NA	NA	False	NA	NA	NA	30405878	30440009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415140_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435196_30435331_30435972_30436128_30436618_30436710_30438027
45335	chr11	+	3033	1	NIC	ENSMUSG00000063316.14	novel	614	5	NA	NA	35	-16	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	105	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAAATACA	2424	False	NA	NA	False	NA	NA	NA	101333306	101336339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101333300_101336300
45337	chr18	+	2821	5	FSM	ENSMUSG00000024516.14	ENSMUST00000139538.9	2829	5	0	8	0	0	multi-exon	FALSE	canonical	3	355	junction_1	12.6565200588471	30	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGATGGCTTCCTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	65933620	65950728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65948029_65949891_65949950_65950530
45338	chr4	+	1303	1	Intergenic	novelGene_2144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAAAGACCACTTTGGG	6842	False	NA	NA	False	NA	NA	NA	147560141	147561444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_147560100_147561400
45339	chr7	+	1266	10	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	-8	166	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	199.728952135106	3	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTCTCTCTGGCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	139717553	139730526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139717687_139718231_139718297_139720105_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139729660_139729774_139730067
45340	chr12	+	1284	11	NNC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-6	-404	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	871.177272430818	32	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATGCTGATAAATGTAT	NA	False	NA	NA	False	NA	NA	NA	17316589	17334367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330603_17334087
45341	chr18	+	1601	7	FSM	ENSMUSG00000025421.16	ENSMUST00000150990.9	3126	7	24	1501	24	-4	multi-exon	FALSE	canonical	0	0	junction_2	156.505235979148	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATGTTTTAATTAGACAT	NA	False	NA	NA	False	NA	NA	NA	77032103	77059097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77032228_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
45342	chr1	-	2646	11	FSM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	153	2860	153	-2860	multi-exon	FALSE	canonical	3	27	junction_8	5.88642506110457	99	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTTTGATGCCTAAACT	NA	False	NA	NA	False	NA	NA	NA	71142152	71069516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71106266_71106348_71113701_71114640_71127267_71127411_71128629_71128687_71141826
45343	chr9	-	2966	2	NNC	ENSMUSG00000039542.17	novel	6050	18	NA	NA	37865	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAACTCTAGTCCAACTG	NA	False	NA	NA	False	NA	NA	NA	49416465	49413439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_49416294_49416353
45344	chrX	-	894	7	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	14	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5950.03962638532	6	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTGGTTTGCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	101232928	101228549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231905_101231978_101232903
45345	chr6	-	1555	9	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	23	-25	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	379.024735340584	5	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAAATCTATTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	33037129	32769183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_32769862_32778112_32778212_32780820_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
45346	chr11	-	1784	9	NIC	ENSMUSG00000001323.18	novel	3699	9	NA	NA	-1	-1368	combination_of_known_junctions	FALSE	canonical	3	5	junction_8	27.485223302713	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCAAGCAGTGAACTTACA	NA	False	NA	NA	False	NA	NA	NA	74816502	74799012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816409
45347	chr17	+	2512	4	NIC	ENSMUSG00000023952.14	novel	2929	12	NA	NA	-240	-3	intron_retention	FALSE	canonical	2	6	junction_1	27.8208554864871	4	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACACTCTGCTTATTCTTA	NA	False	NA	NA	False	NA	NA	NA	46476381	46480291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46476556_46477236_46477373_46477517_46477577_46478148
45348	chr3	-	2558	2	Antisense	novelGene_ENSMUSG00000097532.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	124	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGAGCTTGCAGACACA	1582	False	NA	NA	False	NA	NA	NA	95338397	95334685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95334709_95335862
45350	chr1	+	4011	25	FSM	ENSMUSG00000026213.16	ENSMUST00000027414.16	4458	25	40	407	17	-4	multi-exon	FALSE	canonical	3	17	junction_1	11.130538571376	64	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCATTGCTGACTCTGG	2780	False	NA	NA	False	NA	NA	NA	75498212	75513572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75498287_75498407_75498494_75501326_75501533_75501731_75501807_75502062_75502159_75502495_75502604_75502730_75502803_75503701_75503829_75504006_75504111_75504219_75504316_75504445_75504488_75504612_75504763_75504952_75505038_75505554_75505906_75506054_75506261_75506577_75506695_75506816_75506995_75508946_75509160_75509270_75509375_75510203_75510302_75510396_75510576_75510815_75510898_75511047_75511119_75511821_75512070_75512729
45351	chr4	-	3458	28	FSM	ENSMUSG00000049488.15	ENSMUST00000050686.10	3456	28	-2	0	-2	0	multi-exon	FALSE	canonical	3	27	junction_10	5.81280927905584	45	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGCGTTATTGAT	2	True	NA	NA	False	NA	NA	NA	12087959	12039354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047315_12047809_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075530_12075622_12075693_12077335_12077436_12079874_12079969_12085911_12086001_12087714
45352	chr17	+	2670	4	FSM	ENSMUSG00000034595.18	ENSMUST00000122899.8	2743	4	69	4	69	1	multi-exon	FALSE	canonical	3	22	junction_1	29.4089933334837	142	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGCTGCCTTCCTTTG	9396	False	NA	NA	False	NA	NA	NA	36177016	36186484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36177121_36178121_36179678_36184617_36184832_36185688
45353	chr17	+	2005	9	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	3	-14	intron_retention	FALSE	canonical	3	87	junction_2	86.7564839075443	2	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGAGACCATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	15720176	15737675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15720287_15721415_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
45354	chr9	+	3352	13	NIC	ENSMUSG00000041064.15	novel	3309	13	NA	NA	2	-13	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	35.8817502360183	1	92	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTGAACCGTGTAACT	NA	False	NA	NA	False	NA	NA	NA	65494488	65503231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65494581_65494893_65495677_65496286_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
45355	chr19	-	4323	23	NNC	ENSMUSG00000118021.2	novel	837	2	NA	NA	-18619	53046	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	30	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGCTAGGGTCCCTCTAA	NA	False	NA	NA	False	NA	NA	NA	21829739	21755768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_21756151_21757532_21757610_21769999_21770344_21774689_21774830_21775228_21775791_21779223_21779396_21784721_21784909_21786629_21786802_21789129_21789341_21789574_21789781_21789914_21789983_21792792_21792922_21795284_21795374_21801149_21801284_21802451_21802486_21803399_21803558_21807161_21807339_21809387_21809605_21812779_21812991_21819404_21819586_21821981_21822202_21825298_21825400_21829588
45356	chr9	+	1810	5	NIC	ENSMUSG00000040652.17	novel	1843	6	NA	NA	0	-3	intron_retention	FALSE	canonical	3	365	junction_4	22.3983816379666	359	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGGTCTGTCTTTTTA	4635	False	NA	NA	False	NA	NA	NA	65583860	65597579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65584048_65593477_65593636_65595079_65595256_65596102_65596189_65596376
45359	chr17	+	1254	3	NNC	ENSMUSG00000036552.20	novel	793	3	NA	NA	4	471	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	135	3	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAATCATTATAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	15261880	15264329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15261903_15262509_15262679_15263266
45360	chr17	+	2684	1	NIC	ENSMUSG00000116953.2	novel	1844	12	NA	NA	1927	-5265	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	26	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGGGCTGGCTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	15201687	15204371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15201700_15204400
45361	chr13	+	3755	12	Antisense	novelGene_ENSMUSG00000032621.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	102	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCGGCCTCGCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	103878125	103910964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_103880225_103881291_103881438_103885266_103885362_103888900_103889210_103889531_103889670_103894706_103894809_103895676_103895809_103896925_103897103_103897537_103897692_103900382_103900506_103905836_103905959_103910806
45362	chr14	+	2989	13	FSM	ENSMUSG00000022066.17	ENSMUST00000185072.8	3589	13	7	593	7	461	multi-exon	FALSE	canonical	3	83	junction_8	35.9663229826026	92	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTGAAAACAGACTTGACA	NA	False	NA	NA	False	NA	NA	NA	69792879	69822376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812849_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
45363	chr16	+	3719	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231523.2	506	3	-8	-3205	-4	3205	multi-exon	FALSE	canonical	3	859	junction_1	36	28	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCCATGCTTCACGGAA	NA	False	NA	NA	False	NA	NA	NA	35892445	35908917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_35892508_35903060_35903187_35905386
45364	chr3	-	1708	10	Antisense	novelGene_ENSMUSG00000118506.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCGCTAGTTAAGCATCG	NA	False	NA	NA	False	NA	NA	NA	89973307	89960177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966108_89968944_89969238_89970513_89970555_89971729_89971861_89972813
45365	chr11	+	3443	22	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	2438	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	69.8006230926844	1	161	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTCCAGTCCACTGAAT	105	False	NA	NA	False	NA	NA	NA	78194918	78213280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78195867_78195968_78196108_78203940_78204016_78204173_78204267_78204338_78204464_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211411_78211499_78211880_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
45366	chr15	-	2952	18	NNC	ENSMUSG00000062906.13	novel	2895	18	NA	NA	1	-1	intron_retention	FALSE	canonical	0	0	junction_16	9.00826225902286	65	29	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATCTCTGTCTCCGTTA	NA	False	NA	NA	False	NA	NA	NA	89012881	89007510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89012277_89012387_89012523_89012592
45368	chr7	+	791	4	ISM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	1278	11	-4	-11	3prime_fragment	FALSE	canonical	3	145	junction_2	415.474026464551	4027	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTCGAAAATGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	15631326	15637934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_15631478_15632369_15632542_15636774_15636933_15637624
45369	chr12	-	1803	7	NNC	ENSMUSG00000020650.16	novel	1949	7	NA	NA	3280	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	147.241770190693	16	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGCAAAATAATAATTGGAG	NA	False	NA	NA	False	NA	NA	NA	31681318	31645363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31681123
45370	chr2	+	3037	8	ISM	ENSMUSG00000027646.16	ENSMUST00000109531.8	3586	12	7309	1	5895	-1	3prime_fragment	FALSE	canonical	3	131	junction_1	13.1366444943687	147	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTCAGCAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	157304899	157313757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_157305003_157306548_157306699_157307792_157307949_157309350_157309531_157310402_157310480_157311044_157311199_157311309_157311442_157311672
45371	chr9	-	974	3	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2111	7	103	-7	3prime_fragment	FALSE	canonical	3	15409	junction_1	167.5	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTGTTGGTCAATGC	9211	False	NA	NA	False	NA	NA	NA	78386895	78385737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559
45372	chr4	-	2080	6	ISM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	1837	-953	1385	-3	3prime_fragment	FALSE	canonical	3	25	junction_2	2.28035085019828	122	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTTTAATGTCAGCATT	9392	False	NA	NA	False	NA	NA	NA	116980978	116976418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925
45373	chr12	+	1230	9	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	3889	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	372.968748690825	2	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGGTGCCTGTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	21355160	21364836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21359575_21359764_21360197_21360286_21362298_21362369_21363767_21363865_21364648
45374	chr8	-	1630	3	NIC	ENSMUSG00000063253.12	novel	1764	4	NA	NA	10	-7	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	153.5	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGGTTTTGTGTGTGTG	7484	False	NA	NA	False	NA	NA	NA	84169069	84161130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84162670_84164613_84164686_84169050
45376	chr5	+	4110	23	FSM	ENSMUSG00000028962.15	ENSMUST00000080067.13	4179	23	63	6	10	-3	multi-exon	FALSE	canonical	3	23	junction_2	8.13471288485391	32	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTAGGCTTGGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	24630292	24645942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_24630434_24632520_24632635_24634413_24634577_24634701_24634947_24635028_24635148_24636206_24636440_24636520_24636664_24637759_24637941_24639101_24639238_24639335_24639502_24639632_24639748_24639830_24640016_24640112_24640339_24640542_24640759_24640839_24640989_24641074_24641270_24643692_24643948_24644053_24644144_24644229_24644397_24644734_24644989_24645078_24645249_24645401_24645576_24645669
45377	chr9	-	1685	14	NNC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1148	5101	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTATTCCGTCACACGTT	10008	False	NA	NA	False	NA	NA	NA	108442768	108437634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108437825_108438226_108438281_108438794_108438897_108438980_108439055_108439370_108439578_108439988_108440076_108440332_108440532_108440618_108440708_108440794_108440889_108441831_108441975_108442061_108442206_108442298_108442443_108442523_108442614_108442700
45378	chr5	-	2911	5	NNC	ENSMUSG00000029169.12	novel	2550	12	NA	NA	-26	282	intron_retention	FALSE	non_canonical	0	0	junction_2	351.78011598156	7	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTCTCCCAAAAGAAAACAA	NA	False	NA	NA	False	NA	NA	NA	52347882	52323820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_52324211_52327262_52328926_52338356_52338518_52341809_52342246_52347621
45379	chr17	-	2113	11	NIC	ENSMUSG00000063576.13	novel	2100	12	NA	NA	-26	-18	intron_retention	FALSE	canonical	3	322	junction_10	44.5915911355493	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACCTAAAACCTCCAA	NA	False	NA	NA	False	NA	NA	NA	46991755	46985496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
45380	chr8	-	3611	26	NNC	ENSMUSG00000039509.9	novel	5808	26	NA	NA	3	-2177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	90.123524121064	1	187	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGGTCTGGATCAACCTG	NA	False	NA	NA	False	NA	NA	NA	124675991	124626038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657601_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
45381	chr14	-	3064	6	ISM	ENSMUSG00000061244.15	ENSMUST00000161504.8	2582	17	43089	-1827	-37	1827	3prime_fragment	FALSE	canonical	3	148	junction_5	17.5795335546766	50	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAACTAGTATTTATTCT	NA	False	NA	NA	False	NA	NA	NA	49260764	49249384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_49251807_49252873_49253090_49253654_49253764_49254930_49255018_49256858_49256980_49260655
45383	chr14	+	2983	12	NNC	ENSMUSG00000047098.19	novel	3485	21	NA	NA	94	83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	43.6636278462316	1	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAGGGTTATTTTTGAAG	4304	False	NA	NA	False	NA	NA	NA	55829294	55835196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55829530_55829625_55829666_55829721_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108
45384	chr15	-	4408	13	NNC	ENSMUSG00000022246.15	novel	4732	17	NA	NA	-33157	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	63.4649947258767	1	246	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCATTTTGCATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	10633330	10569075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583876_10583950_10592153_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221
45385	chr6	+	880	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	72	-2	19	0	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	80	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	NA	False	NA	NA	NA	86986889	87005443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
45387	chr5	-	1879	9	NIC	ENSMUSG00000028944.15	novel	2205	12	NA	NA	79	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	55.5730094110441	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTATGTATATGA	NA	False	NA	NA	False	NA	NA	NA	25113369	25067745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25083702_25083762_25085681_25085764_25094079_25094184_25113320
45388	chr19	+	1292	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	4	-6	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	308.862186096	28	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATATGGATTTTTAAATT	NA	False	NA	NA	False	NA	NA	NA	36061119	36082171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_36061361_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
45389	chr11	-	1893	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	52	3	52	-3	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	310	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCCATGGCTGATAGCTA	NA	False	NA	NA	False	NA	NA	NA	115167824	115158852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
45390	chr11	-	1442	10	Antisense	novelGene_ENSMUSG00000035198.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	90	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCGCCAGACAATGCGCTC	3269	False	NA	NA	False	NA	NA	NA	101017245	101010942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_101011069_101011372_101011484_101011654_101011749_101014274_101014323_101014742_101014865_101015057_101015143_101015245_101015399_101015795_101015944_101016023_101016190_101016856
45391	chr11	-	2079	7	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	231	-2	intron_retention	FALSE	canonical	0	0	junction_6	104.831611008639	672	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTGCGGTGGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	77784691	77771442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77772081_77772326_77772403_77772943_77773590_77773954_77774138_77774604_77774819_77782937_77783061_77784492
45393	chr11	-	1665	9	NNC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	153	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	4646.30182073604	1	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69561556	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559151_69559224_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440
45396	chr17	-	2886	1	Genic_Genomic	ENSMUSG00000055240.18	novel	NA	NA	NA	NA	11298	81	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCATAAATTTCTGGT	5722	False	NA	NA	False	NA	NA	NA	33602033	33599147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_33599100_33602000
45397	chr9	-	2597	5	NNC	ENSMUSG00000036986.17	novel	4343	8	NA	NA	-1158	1	intron_retention	FALSE	canonical	3	13	junction_1	139.736358904903	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTCTGTAATTTTGC	NA	False	NA	NA	False	NA	NA	NA	58138568	58125823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58126012_58127105_58127853_58128997_58129149_58136637_58136691_58137110
45398	chr19	-	758	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	60	3	0	-1	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	70	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGGTGTCTTTGGTGCT	NA	False	NA	NA	False	NA	NA	NA	4087925	4085409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
45399	chr10	+	4748	3	FSM	ENSMUSG00000049764.9	ENSMUST00000218627.2	378	3	37	-4407	33	-439	multi-exon	FALSE	canonical	3	22	junction_2	4	1	261	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAATAAAAAAGCATTTTG	NA	False	NA	NA	False	NA	NA	NA	75868520	75878629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_75868584_75868786_75868910_75874067
45402	chr7	-	1383	7	NIC	ENSMUSG00000053565.11	novel	774	8	NA	NA	-16	0	intron_retention	FALSE	canonical	3	2641	junction_1	359.585718416192	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	28681255	28670797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28677416_28679868_28679968_28681098
45403	chrX	+	1017	4	Antisense	novelGene_ENSMUSG00000002015.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCATTTTCCAGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	72729806	72733552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72730201_72731441_72731544_72732265_72732386_72733151
45405	chr4	-	3789	20	NNC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	-54	-2	intron_retention	FALSE	canonical	3	119	junction_13	62.6646971262766	107	9	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTTTGCTTCCTGTTCCT	7366	False	NA	NA	False	NA	NA	NA	155753709	155739141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743350_155743447_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
45406	chr2	-	1650	11	NNC	ENSMUSG00000038383.17	novel	1636	12	NA	NA	-70	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	59.2291313459855	695	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTTGTTCTGATGAC	NA	False	NA	NA	False	NA	NA	NA	155199420	155120166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155187559_155187633_155199185
45408	chr5	-	2042	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	47	0	-18	0	multi-exon	FALSE	canonical	3	213	junction_6	10.0788557551606	235	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACTCGGCACATTTT	NA	False	NA	NA	False	NA	NA	NA	116162474	116151644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
45409	chr4	+	2386	12	NIC	ENSMUSG00000034401.17	novel	2466	13	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	34.6829798447177	162	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACCTCTGGTATTTTCA	NA	False	NA	NA	False	NA	NA	NA	111577206	111686334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_111577455_111603337_111603476_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
45410	chr2	+	2093	16	Fusion	ENSMUSG00000027470.10_ENSMUSG00000027469.17	novel	4365	18	NA	NA	15	-10619	multi-exon	FALSE	canonical	0	0	junction_14	301.541786306457	1	107	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCAGGAAGAAGGGGCTC	2740	False	NA	NA	False	NA	NA	NA	152689929	152754369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_152690030_152696840_152696936_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732425_152732558_152754354
45411	chr3	-	1422	12	ISM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	8352	-233	-4308	40	3prime_fragment	FALSE	canonical	3	805	junction_4	48.5854448836836	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGACTCTGTCAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	88850136	88830901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081
45412	chr7	+	2029	13	NIC	ENSMUSG00000003437.15	novel	2003	14	NA	NA	6	-28	intron_retention	FALSE	canonical	3	164	junction_5	17.6562469272367	310	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTGTTAATAAACCTAACT	586	False	NA	NA	False	NA	NA	NA	28092392	28098780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
45414	chr15	+	2077	14	NIC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	5	-12	intron_retention	FALSE	canonical	3	116	junction_9	17.5296874138817	44	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACTCGTCTGAAAGAAA	3108	False	NA	NA	False	NA	NA	NA	76460563	76479996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
45415	chr10	+	2917	10	NNC	ENSMUSG00000019864.15	novel	2981	9	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.3400896274464	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGGCTGGTTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	43777808	43823855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_43778159_43778213_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
45416	chr12	-	1706	19	FSM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_1	34.9372011570955	1015	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	69274969	69248546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
45418	chr10	+	3275	17	FSM	ENSMUSG00000020015.11	ENSMUST00000069965.9	3615	17	290	50	290	-50	multi-exon	FALSE	canonical	3	213	junction_16	22.6329405955126	3	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTTGTTTTGAAATTT	NA	False	NA	NA	False	NA	NA	NA	92997041	93077140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_92997063_93044033_93044181_93047772_93047938_93052204_93052339_93053825_93053952_93057448_93057506_93060797_93060913_93061885_93061981_93062574_93062638_93064506_93064631_93068241_93068363_93071299_93071398_93071888_93071995_93072782_93072826_93073655_93073747_93074827_93074906_93075449
45419	chr4	+	2377	11	NNC	ENSMUSG00000028820.14	novel	3465	10	NA	NA	-3	-446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	285.68914925142	7	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAGCCTTTTCATGTAT	NA	False	NA	NA	False	NA	NA	NA	126915113	126924583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126915339_126915983_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126923619
45420	chr4	+	1308	10	FSM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	14	-1	-7	0	multi-exon	FALSE	canonical	3	322	junction_9	32.5261528202145	925	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	107171573	107217020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
45421	chr9	-	3098	22	Antisense	novelGene_ENSMUSG00000057193.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	119	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACCGGTCAGACAGGCC	NA	False	NA	NA	False	NA	NA	NA	21265704	21249136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21249258_21249735_21249783_21253071_21253147_21253232_21253320_21253479_21253559_21253684_21253802_21253893_21253952_21254036_21254344_21254430_21254543_21256123_21256259_21256586_21256689_21256773_21256872_21257208_21257288_21257982_21258241_21258320_21258423_21259176_21259281_21259365_21259443_21259621_21259692_21259829_21259920_21263759_21263846_21264296_21264467_21264980
45422	chr11	-	2844	6	ISM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	288	12	180	-12	3prime_fragment	FALSE	canonical	3	175	junction_5	27.8107892732299	2	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAACCTGACTCTGCGT	NA	False	NA	NA	False	NA	NA	NA	61384834	61379649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472
45424	chr18	-	2858	23	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-28907	-178	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_22	58.1173648677704	6	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAACCAAATCCAAGGAT	NA	False	NA	NA	False	NA	NA	NA	34053934	33929557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34051345_34051486_34053910
45425	chr3	-	1620	1	FSM	ENSMUSG00000047674.3	ENSMUST00000057860.3	2352	1	526	206	526	-206	mono-exon	FALSE	NA	NA	NA	NA	NA	215	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGATTTTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	140917590	140915970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_140916000_140917600
45426	chrX	+	3884	16	Antisense	novelGene_ENSMUSG00000081399.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	10	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAGCTGCAGAGTAGACA	NA	False	NA	NA	False	NA	NA	NA	111548124	111608344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_111550139_111552674_111552786_111554025_111554112_111554942_111555073_111556408_111556526_111556812_111556971_111557757_111557871_111558714_111558814_111565791_111565863_111571425_111571577_111573843_111574019_111578729_111578836_111587069_111587151_111593092_111593168_111607868_111608203_111608281
45427	chr1	-	1485	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	318.204272730071	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCTGACTGGCCTGAGT	NA	False	NA	NA	False	NA	NA	NA	10108388	10094825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10108143
45428	chr4	+	2002	6	NNC	ENSMUSG00000028334.11	novel	2179	6	NA	NA	25	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	361.736146935857	32	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGACCTGTACTTACTT	NA	False	NA	NA	False	NA	NA	NA	46489272	46503620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500924_46502518
45431	chr1	-	2423	5	NIC	ENSMUSG00000026709.11	novel	2126	14	NA	NA	184	2393	intron_retention	FALSE	canonical	3	329	junction_1	45.256905550424	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATGTATATTACTTACCA	NA	False	NA	NA	False	NA	NA	NA	160897993	160887615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649
45432	chr11	+	1145	4	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	-6	at_least_one_novel_splicesite	FALSE	canonical	2	164	junction_1	5816.94148347929	4	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACGCCTGATGTCCAGA	4058	False	NA	NA	False	NA	NA	NA	100210811	100212916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100210987_100211561_100211656_100211773_100211876_100212142
45433	chr5	-	1574	3	ISM	ENSMUSG00000047215.15	ENSMUST00000147660.8	1586	4	388	-289	-2	-10	intron_retention	FALSE	canonical	3	12167	junction_1	389.5	5	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAATAAAAGACTTATATA	NA	False	NA	NA	False	NA	NA	NA	65548336	65545730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_65546954_65547730_65547827_65548081
45434	chr2	-	2720	4	NIC	ENSMUSG00000027472.15	novel	1273	5	NA	NA	-2	-24	intron_retention	FALSE	canonical	3	235	junction_2	15.7480157480236	8	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAACATGAACTGAACAAAC	8722	False	NA	NA	False	NA	NA	NA	152857264	152850833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152851657_152852177_152852259_152854300_152856006_152857153
45435	chr3	-	1801	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	3	-7	combination_of_known_junctions	FALSE	canonical	3	120	junction_6	235.712813848219	176	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAGACAATTATTGCATTT	NA	False	NA	NA	False	NA	NA	NA	10416370	10405021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416301
45436	chr8	-	1705	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	71	-4	27	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	2	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43759946	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
45437	chr4	+	2130	6	NNC	ENSMUSG00000059482.16	novel	2116	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	56.3773003965248	203	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCTCTGTGCAATTAT	NA	False	NA	NA	False	NA	NA	NA	10874494	10899425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882480_10893262_10893359_10897898
45438	chr1	+	2502	8	NNC	ENSMUSG00000026455.15	novel	3408	12	NA	NA	-2888	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	57.5251497794039	1	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGAGAATTTGTGGGTA	NA	False	NA	NA	False	NA	NA	NA	134400129	134418613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415438_134415481_134416672_134416860_134417069
45439	chr10	+	2150	12	NIC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	-7	-114	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	18.002295537739	249	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	128541041	128555993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128541154_128542104_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
45440	chr10	-	2924	25	NNC	ENSMUSG00000025357.9	novel	2834	24	NA	NA	-22	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	20.8556130867022	1	63	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAGCAACAAAAGCCCTC	9189	False	NA	NA	False	NA	NA	NA	128580746	128556016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572444_128572588_128572877_128573014_128579664_128579910_128580676
45441	chr4	-	1633	1	NIC	ENSMUSG00000060288.14	novel	757	10	NA	NA	9572	-2053	mono-exon	FALSE	NA	NA	NA	NA	NA	13	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCATTACAGATGGTTGT	8780	False	NA	NA	False	NA	NA	NA	119168042	119166409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_119166400_119168000
45442	chr8	-	1482	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	45	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	977.642515896731	1	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTCTGTGTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	108315045	108307016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307952_108309013_108309080_108310822_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
45443	chr19	+	1410	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	157	297	157	-297	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	3	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	1000	False	NA	NA	False	NA	NA	NA	8944561	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
45444	chr17	+	1280	7	NNC	ENSMUSG00000007039.13	novel	1342	7	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	162.253659434849	41	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAAGGGCTGTGACTGGTT	NA	False	NA	NA	False	NA	NA	NA	35278022	35281066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280500_35280602_35280766
45445	chr6	-	2114	5	FSM	ENSMUSG00000030222.14	ENSMUST00000032347.11	2075	5	-39	0	-39	0	multi-exon	FALSE	canonical	1	2	junction_4	19.3697573552174	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAATTCTTTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	137147534	137031822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_137033539_137034810_137034885_137043996_137044054_137141932_137142101_137147435
45446	chr13	-	1688	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	56.5674512702303	430	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	NA	NA	NA	35178107	35161730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177812
45447	chr18	+	1659	13	NNC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-11	22913	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	85.5613408938614	2	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTCCAGTCTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	75151840	75307012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75238937_75239010_75247867_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75306875
45448	chr11	-	2181	20	FSM	ENSMUSG00000018574.15	ENSMUST00000102574.10	2168	20	-20	7	-17	-1	multi-exon	FALSE	canonical	3	125	junction_10	16.9960073525513	373	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTCTGCCGTGAATGTC	NA	False	NA	NA	False	NA	NA	NA	69906254	69901015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905618_69905685_69905942_69906022_69906088
45449	chr8	-	2805	9	NIC	ENSMUSG00000004994.13	novel	2119	10	NA	NA	-11	-10	intron_retention	FALSE	canonical	3	143	junction_8	31.6501875981802	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTCTTTGTCCCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	84997020	84984940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
45450	chr1	+	3553	4	Antisense	novelGene_ENSMUSG00000117809.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	75	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCCAGCAGCCCCGGCA	NA	False	NA	NA	False	NA	NA	NA	53384431	53391823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_53387718_53389145_53389224_53390038_53390093_53391688
45451	chr5	+	3362	18	NNC	ENSMUSG00000029095.18	novel	3564	20	NA	NA	-7	-68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	26.7032908822983	30	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATGAGGTGTCATGTCA	1592	False	NA	NA	False	NA	NA	NA	35915302	36042249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030574_36032174_36032258_36040649
45454	chr1	-	1834	12	NNC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	20	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	59.5276170368229	244	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTCTGCGCCAGTTAT	4360	False	NA	NA	False	NA	NA	NA	59158945	59139721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155097_59157133_59157166_59158861
45455	chr8	+	2423	11	NIC	ENSMUSG00000031808.8	novel	2730	13	NA	NA	71	-499	intron_retention	FALSE	canonical	3	121	junction_2	15.5399485198633	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTATGCATCCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	72023369	72038850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72038137_72038545
45456	chr8	-	3268	8	Genic_Genomic	ENSMUSG00000091154.3	novel	666	1	NA	NA	-13017	-238	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTCCCAAGAGGATGCC	NA	False	NA	NA	False	NA	NA	NA	27546087	27532647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_27532741_27535054_27535164_27535425_27535460_27535949_27536027_27539200_27539337_27541286_27542361_27543311_27544057_27545087
45457	chr6	+	3623	4	Antisense	novelGene_ENSMUSG00000004267.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCAGTGGTAGAGCACAA	NA	False	NA	NA	False	NA	NA	NA	124737329	124744280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124738666_124739610_124740888_124743067_124743290_124743492
45459	chr8	+	2318	17	NNC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	14	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	122.62147994438	1	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGGGCTCACCTCATTT	4616	False	NA	NA	False	NA	NA	NA	3681183	3692793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3681205_3682219_3682270_3682499_3682578_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691734_3691821_3691897
45460	chr9	-	1561	15	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-49	-3	combination_of_known_junctions	FALSE	canonical	3	284	junction_14	59.3909565025326	1223	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATGTTCTTAATACTGTG	NA	False	NA	NA	False	NA	NA	NA	106315567	106310192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
45461	chr4	+	1389	9	NIC	ENSMUSG00000028601.19	novel	1307	10	NA	NA	-8	-8	intron_retention	FALSE	canonical	3	713	junction_3	41.6555818588578	172	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTGTTAGCTTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	108022676	108036495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031372_108034269_108034321_108035567_108035616_108036103
45462	chr19	-	2373	6	NIC	ENSMUSG00000059734.8	novel	780	7	NA	NA	-16	1	intron_retention	FALSE	canonical	3	1174	junction_5	332.450898630159	46	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTGTTGTGTTGTTCCA	NA	False	NA	NA	False	NA	NA	NA	3962750	3958865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_3959075_3959152_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
45463	chr11	-	1730	5	ISM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	987	29	987	-29	3prime_fragment	FALSE	canonical	3	3182	junction_2	152.739975121119	2	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGGGAAATAAACACCCCT	NA	False	NA	NA	False	NA	NA	NA	120471219	120468963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007
45464	chrX	-	868	6	ISM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	1022	11	964	-11	3prime_fragment	FALSE	canonical	3	14744	junction_4	846.047185445351	5	27	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAAACTACTTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	101231978	101228557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899
45465	chr17	-	4034	12	NIC	ENSMUSG00000023931.6	novel	2661	13	NA	NA	239	1	intron_retention	TRUE	canonical	2	16	junction_3	7.09440473277333	51	61	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTCCTGGTTTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	53770095	53705915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
45466	chr8	-	1105	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-74	-77	-74	77	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592504	103591399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592500
45467	chr10	-	2353	13	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	3203	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	15.7524248574272	19	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	NA	False	NA	NA	NA	42351073	42188580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42350930
45468	chr11	+	3307	14	FSM	ENSMUSG00000038178.17	ENSMUST00000169547.9	7145	14	70	3768	44	-81	multi-exon	FALSE	canonical	3	23	junction_1	7.15095061334898	50	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAATTACTGTATGTGCCT	7359	False	NA	NA	False	NA	NA	NA	75423007	75464628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75423241_75423413_75423615_75433983_75434192_75435507_75435564_75436579_75436657_75451724_75451818_75453597_75453732_75453816_75454020_75454387_75454535_75457804_75457944_75459186_75459317_75461396_75461471_75462582_75462707_75463140
45470	chr19	+	2317	13	NNC	ENSMUSG00000025036.8	novel	3205	12	NA	NA	11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	14.6657196663966	66	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACACTGTCTGCAAACT	NA	False	NA	NA	False	NA	NA	NA	46561816	46585335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110_46583262_46584139
45471	chr17	+	1368	8	NNC	ENSMUSG00000024188.17	novel	1700	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	203.715287515068	28	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	NA	False	NA	NA	NA	26471930	26499694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496556_26499123
45472	chr7	+	3379	22	FSM	ENSMUSG00000025584.18	ENSMUST00000026672.8	3802	22	423	0	423	0	multi-exon	FALSE	canonical	3	151	junction_8	20.0953509362663	87	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTTGTTGCCATTTCTT	1530	False	NA	NA	False	NA	NA	NA	80863766	80984281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_80863837_80930925_80930983_80932570_80932762_80941984_80942042_80942879_80942935_80945425_80945515_80950387_80950467_80951902_80952041_80956442_80956532_80958552_80958605_80958686_80958730_80964857_80964936_80966709_80966781_80967033_80967196_80968815_80968865_80969070_80969207_80970399_80970599_80973763_80973982_80975998_80976129_80977775_80977944_80982617_80982748_80983163
45474	chr9	-	1047	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6385.40221912449	2	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386764_78387801_78387971_78388920
45475	chr5	-	2975	11	FSM	ENSMUSG00000032867.9	ENSMUST00000049474.9	5000	11	372	1653	334	-1653	multi-exon	FALSE	canonical	3	339	junction_8	26.290682760248	127	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGAGCGTGTGTGCTGCT	NA	False	NA	NA	False	NA	NA	NA	118293157	118204682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_118206295_118206669_118206781_118208410_118208585_118215641_118215770_118230560_118230768_118233597_118233795_118251676_118251835_118263000_118263090_118266873_118267039_118280732_118280838_118293128
45476	chr2	+	3210	8	NNC	ENSMUSG00000037523.14	novel	3057	7	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	79.2778631891446	1	145	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAATCTTGTGAGTTCCA	7257	False	NA	NA	False	NA	NA	NA	131075979	131089939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_131076276_131079346_131079461_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
45477	chr2	+	4542	12	ISM	ENSMUSG00000001768.17	ENSMUST00000147976.8	4657	13	254	3	208	-3	3prime_fragment	TRUE	canonical	2	2	junction_2	3.67479689661959	27	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCAGTTGTCTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	145628289	145729533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_145628335_145664184_145664286_145664529_145664682_145686630_145686824_145690684_145690797_145693098_145693172_145700360_145700453_145701933_145703095_145718310_145718617_145720763_145720896_145725241_145725406_145727522
45478	chr2	-	2572	18	NNC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	-25	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	195.329656582108	1	101	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTCTGAGTGCCCAGTA	NA	False	NA	NA	False	NA	NA	NA	126975847	126945750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126946192_126947797_126947842_126948023_126948116_126949280_126949378_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967483_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
45479	chr4	-	2359	9	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	8	-7	intron_retention	FALSE	canonical	3	100	junction_8	324.369388198085	33	40	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTACTGTTGCCTCCTG	NA	False	NA	NA	False	NA	NA	NA	123033736	123020914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123030692_123031318_123031363_123032658_123032758_123033702
45480	chrX	+	4712	38	ISM	ENSMUSG00000031093.15	ENSMUST00000115266.8	6047	49	35131	-1	7640	1	3prime_fragment	TRUE	canonical	1	53	junction_37	26.1078283237205	66	33	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTAATTCGAAGTGAAGG	NA	False	NA	NA	False	NA	NA	NA	35246180	35340210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_35246273_35246359_35246426_35248452_35248546_35251145_35251270_35256685_35256808_35257250_35257338_35258076_35258167_35263740_35263860_35266162_35266233_35266318_35266445_35267653_35267726_35270252_35270400_35271726_35271811_35272991_35273104_35273595_35273635_35275284_35275464_35277562_35277680_35279866_35279943_35280450_35280561_35283644_35283757_35291952_35292020_35293633_35293682_35295933_35296077_35297955_35298072_35301191_35301330_35304764_35304948_35308518_35308633_35310706_35310923_35311010_35311069_35316133_35316241_35323200_35323324_35324846_35324961_35325933_35326081_35330522_35330734_35331312_35331504_35331982_35332084_35333500_35333640_35339751
45481	chr6	-	3267	3	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5477	-2	intron_retention	FALSE	canonical	3	122	junction_1	7	11	62	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGATTTAGGCGGACTTT	2761	False	NA	NA	False	NA	NA	NA	83675048	83669789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566
45482	chr5	-	2756	26	NIC	ENSMUSG00000023079.15	novel	3572	31	NA	NA	-2780	2	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	63.3898919386995	1	71	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAACAAAAGCGTCACTT	546	False	NA	NA	False	NA	NA	NA	134433822	134386520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395750_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509
45483	chr15	-	2153	7	Antisense	novelGene_ENSMUSG00000023027.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGTCCCAGGGGTCGGCGG	NA	False	NA	NA	False	NA	NA	NA	100159104	100125855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_100125963_100130612_100130711_100143123_100143221_100149947_100150085_100151981_100152154_100152232_100152381_100157710
45485	chr18	+	1681	3	NIC	ENSMUSG00000024317.16	novel	1769	5	NA	NA	-35	55	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	97.5	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTATATTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	21135012	21160497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_21135227_21153944_21154057_21159142
45486	chrX	-	3108	21	Antisense	novelGene_ENSMUSG00000031066.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGACGCAACTGAAGATAG	NA	False	NA	NA	False	NA	NA	NA	20586525	20570184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20570360_20577989_20578096_20578266_20578398_20578562_20578677_20579066_20579218_20579349_20579416_20579535_20579630_20579981_20580159_20580250_20580409_20580742_20580968_20581088_20581174_20581264_20581389_20583066_20583193_20583991_20584042_20584230_20584521_20584603_20584659_20584915_20585028_20585307_20585447_20585531_20585654_20585831_20585930_20586015
45487	chr9	-	3221	5	NIC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	24	-250	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	306.107824140449	4	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTTCATGGTAGATAAT	NA	False	NA	NA	False	NA	NA	NA	96993186	96972004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_96974659_96975129_96975231_96979155_96979234_96982127_96982293_96992963
45488	chr5	-	2396	9	FSM	ENSMUSG00000062110.15	ENSMUST00000072857.13	3672	9	3	1273	3	0	multi-exon	FALSE	canonical	3	48	junction_1	6.19979838381862	168	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCAAGCTGTCGCTAGC	NA	False	NA	NA	False	NA	NA	NA	74692407	74366749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74691442
45490	chr19	-	1223	8	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1162.82800946307	13	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCCATTCATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	15902290	15882498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15882891_15886705_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
45492	chr13	+	3789	5	FSM	ENSMUSG00000054728.18	ENSMUST00000136576.8	716	5	22	-3095	7	-7	multi-exon	FALSE	canonical	3	6	junction_4	2.29128784747792	9	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTTAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	43276354	43291982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_43276531_43281613_43281676_43286395_43286537_43287402_43287480_43288649
45494	chr7	-	2091	9	NIC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	-125	-3	intron_retention	FALSE	canonical	3	90	junction_8	21.1527185014125	314	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCCGGGCTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	140676777	140671092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
45495	chr9	+	3414	1	FSM	ENSMUSG00000063058.3	ENSMUST00000071302.3	881	1	49	-2582	49	2582	mono-exon	FALSE	NA	NA	NA	NA	NA	1376	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAATCAACAAGACTCTA	NA	False	NA	NA	False	NA	NA	NA	98738595	98742009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_98738600_98742000
45496	chr11	+	2252	11	ISM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	3878	4	-62	-4	3prime_fragment	FALSE	canonical	3	16	junction_2	6.19354502688081	92	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATCTTGAGTGACACT	NA	False	NA	NA	False	NA	NA	NA	100440310	100462785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
45497	chr1	+	1612	10	FSM	ENSMUSG00000006304.15	ENSMUST00000006467.14	1404	10	14	-222	14	0	multi-exon	FALSE	canonical	3	1867	junction_3	197.32307280632	1460	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7862	False	NA	NA	False	NA	NA	NA	74275689	74307368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
45498	chr12	+	3108	20	NNC	ENSMUSG00000018707.14	novel	14342	77	NA	NA	-1131	-26	intron_retention	FALSE	canonical	0	0	junction_10	141.729014578551	1	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCTCCCGCCTCTTGCCG	8926	False	NA	NA	False	NA	NA	NA	110624394	110633353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627985_110628211_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
45499	chr11	+	1882	14	NIC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	5	-2	intron_retention	FALSE	canonical	0	0	junction_6	29.6532225814911	6	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTGAGTGCATTATTTG	8688	False	NA	NA	False	NA	NA	NA	83363945	83397567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
45500	chr9	+	5044	17	NNC	ENSMUSG00000032536.13	novel	736	3	NA	NA	-4617	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	89.913652154442	125	95	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTTTTTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	121138686	121303985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_121138789_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271766_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289644_121298050_121298154_121301302
45501	chr13	+	3137	27	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	22149	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	146.314264189536	1	156	17	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGAATCCTTTATTGTG	NA	False	NA	NA	False	NA	NA	NA	18923608	19050973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994738_18995720_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036513_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
45502	chr4	+	3859	23	NNC	ENSMUSG00000029033.17	novel	4301	23	NA	NA	2	-17	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	17.9093216413379	86	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTCTGCCGCTTGCACC	NA	False	NA	NA	False	NA	NA	NA	155976770	155991690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155976899_155980567_155980626_155981023_155981144_155981340_155981395_155983327_155983387_155983873_155984058_155984415_155984461_155984545_155984642_155984743_155984819_155986116_155986245_155986332_155986385_155986588_155986690_155986761_155986874_155987114_155987324_155987416_155987487_155987595_155987691_155987767_155987971_155988207_155988316_155989284_155989384_155989469_155989691_155989866_155989977_155990064_155990176_155990269
45503	chr17	-	1820	3	NIC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	14	-18	intron_retention	FALSE	canonical	3	1955	junction_1	13	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAGGACAATATATCCGG	3418	False	NA	NA	False	NA	NA	NA	71297511	71281038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_71282616_71284042_71284242_71297467
45504	chr7	-	1386	12	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-2	-4	intron_retention	FALSE	canonical	0	0	junction_5	726.940048911011	37	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGACCTCTGCTGTGTCC	-15	True	NA	NA	False	NA	NA	NA	45083703	45071325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073674_45074406_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
45505	chr4	-	1246	1	FSM	ENSMUSG00000095042.2	ENSMUST00000119266.2	1002	1	-73	-171	-73	171	mono-exon	FALSE	NA	NA	NA	NA	NA	4	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGCACCCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57372027	57370781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_57370800_57372000
45506	chr13	+	4932	14	FSM	ENSMUSG00000021587.6	ENSMUST00000022075.6	5040	14	104	4	14	-4	multi-exon	FALSE	canonical	1	7	junction_5	4.93268293596351	53	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTCTTCATGAGAATAA	NA	False	NA	NA	False	NA	NA	NA	75238048	75282976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_75238361_75241201_75241307_75244408_75244520_75246019_75246167_75247395_75247473_75254069_75254159_75258936_75259110_75260660_75260874_75263355_75263457_75273968_75274203_75274842_75275001_75275928_75276063_75278160_75278323_75280060
45507	chr10	+	850	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	28	7	28	-7	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	3	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGACTCAGCAGGTGCT	4940	False	NA	NA	False	NA	NA	NA	127871471	127884495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
45509	chr14	-	1262	4	NIC	ENSMUSG00000015759.12	novel	1538	5	NA	NA	27	-103	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	246.856233463933	3	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGCTGTGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47025764	47013126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_47014007_47016345_47016490_47017569_47017683_47025639
45511	chr9	+	3344	1	Antisense	novelGene_ENSMUSG00000032244.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTGTTGGCAATGCTGA	NA	False	NA	NA	False	NA	NA	NA	62701455	62704799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_62701500_62704800
45512	chr9	+	1095	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	-1	649	-1	-253	5prime_fragment	FALSE	canonical	3	16882	junction_3	1479.39201511128	2	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCAGTTTGGCGTGTC	NA	False	NA	NA	False	NA	NA	NA	64080655	64085299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178
45513	chr8	+	2048	10	NNC	ENSMUSG00000008167.15	novel	1907	10	NA	NA	28	0	intron_retention	FALSE	canonical	1	1	junction_5	34.3665786541963	181	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	85786753	85793750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791302_85791918_85792046_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
45514	chr12	+	1517	8	NIC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	7	-6	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	181.023281849127	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAAGTTGCTTTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	87194498	87211491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87208248_87208328_87208813_87208867_87209761_87209812_87210477
45515	chr2	-	1404	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-51	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	290	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACATCCTTGGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	152186003	152179345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179679_152180347_152180608_152181634_152181928_152184956_152185248_152185776
45516	chr7	-	1966	18	NNC	ENSMUSG00000030720.17	novel	3203	18	NA	NA	-83	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	73.5592880480194	11	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTGTGCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	126184041	126171259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174585_126174659_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179535_126179585_126179964_126180037_126180571_126180629_126180817_126180915_126181935_126182015_126182171_126182273_126182474_126182620_126183345_126183453_126183991
45517	chr9	+	1376	8	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	39	1	intron_retention	FALSE	canonical	3	687	junction_4	70.5401897314356	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTCTTGTGTCTGTCT	2473	False	NA	NA	False	NA	NA	NA	21323236	21331571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21323394_21323528_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330845_21330920_21331009_21331331
45518	chr7	-	985	6	ISM	ENSMUSG00000057143.16	ENSMUST00000130139.3	2484	8	-43	2019	-19	-2019	5prime_fragment	FALSE	canonical	0	0	junction_1	2.22710574513201	4	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCAAGTGCTGCAAGGTG	NA	False	NA	NA	False	NA	NA	NA	104002588	103991101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_103991183_103992262_103992286_103994105_103994337_103995855_103995952_103997134_103997611_104002510
45522	chr6	+	2721	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	25	15	25	-12	multi-exon	FALSE	canonical	3	26	junction_2	2.77263412660235	4	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGACGTGTAAAGTCCC	9738	False	NA	NA	False	NA	NA	NA	47930348	47942219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
45524	chr18	-	1930	15	NNC	ENSMUSG00000024556.5	novel	715	4	NA	NA	0	-3411	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	146.095789096869	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATTTTCTGTTTCTCCA	360	False	NA	NA	False	NA	NA	NA	73948520	73906384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_73906671_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
45526	chr17	+	2757	6	Antisense	novelGene_ENSMUSG00000071267.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	135	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACGGTTCCGGTCACGTG	NA	False	NA	NA	False	NA	NA	NA	22146494	22181479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_22148471_22149346_22149472_22151971_22152095_22160706_22160834_22172871_22173033_22181234
45527	chr5	-	3805	11	Antisense	novelGene_ENSMUSG00000051674.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCCCCAAACCTTAGCTC	NA	False	NA	NA	False	NA	NA	NA	73717896	73648446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_73648534_73668226_73668297_73668467_73668508_73677456_73677572_73679993_73680085_73688843_73688924_73691953_73692041_73701389_73701493_73712699_73712804_73714593_73714700_73714974
45529	chr4	-	448	3	NIC	ENSMUSG00000029060.18	novel	1558	6	NA	NA	1126	-9	combination_of_known_splicesites	FALSE	canonical	3	10	junction_2	185	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTATCGGACTTTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	155740058	155739148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155739451_155739561_155739628_155739978
45530	chr19	-	1471	11	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	30	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1327.79329716639	1	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3793	False	NA	NA	False	NA	NA	NA	7017305	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998306_7002734_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011671_7012014_7012157_7012863_7013074_7017247
45531	chr10	+	1488	5	NNC	ENSMUSG00000020265.17	novel	772	4	NA	NA	9	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	702.035611632345	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTATGTTAAACACTGTA	NA	False	NA	NA	False	NA	NA	NA	77442067	77453262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77442176_77445645_77445775_77449813_77449869_77452023_77453100_77453142
45532	chr17	-	3625	9	NIC	ENSMUSG00000024070.16	novel	5884	19	NA	NA	-16	-547	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	42.4941172399192	63	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGTATGAAGTGTTTAATA	NA	False	NA	NA	False	NA	NA	NA	79328261	79277594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
45533	chr12	-	2111	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	1277	2	1277	-2	multi-exon	FALSE	canonical	3	240	junction_2	19	671	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTTTGTTACCTACATTC	NA	False	NA	NA	False	NA	NA	NA	69243926	69235862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69237169_69239581_69239726_69243265
45534	chr12	-	2381	9	FSM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	-29	3712	-29	-286	multi-exon	FALSE	canonical	3	931	junction_7	74.7277349783867	30	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAAACCCCAAATGGGC	1216	False	NA	NA	False	NA	NA	NA	91556812	91525747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308
45535	chr7	-	1579	3	ISM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	29911	104	16731	-104	3prime_fragment	FALSE	canonical	3	1077	junction_2	22.5	23	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTCTAACCGGACCTT	NA	False	NA	NA	False	NA	NA	NA	25424271	25420693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_25421789_25422230_25422423_25423979
45536	chr16	-	1669	7	Antisense	novelGene_ENSMUSG00000072419.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	74	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGACTGCTTCCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	48139873	48130805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48130901_48131935_48132071_48134242_48134379_48135982_48136278_48137643_48137845_48138993_48139249_48139321
45537	chr11	+	2206	11	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4338	combination_of_known_splicesites	FALSE	canonical	3	13	junction_10	2183.19729067256	1	122	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCAGATTCAAAGTATGT	NA	False	NA	NA	False	NA	NA	NA	55360559	55391326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55390284
45538	chr4	-	1886	10	FSM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	-35	0	7	0	multi-exon	FALSE	canonical	2	5	junction_7	9.25896295822207	306	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	9999	False	NA	NA	False	NA	NA	NA	129590624	129570147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586428_129586512_129586858_129587079_129587678_129587806_129590507
45539	chr9	+	3215	10	FSM	ENSMUSG00000006673.15	ENSMUST00000112155.9	3040	10	-24	-151	-1	-20	multi-exon	FALSE	canonical	3	392	junction_1	89.886485340754	1	173	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAGCACGTCTTTTCAAC	1146	False	NA	NA	False	NA	NA	NA	108394284	108437342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
45540	chr18	-	4333	16	FSM	ENSMUSG00000024331.12	ENSMUST00000075214.9	4508	16	156	19	156	-19	multi-exon	FALSE	canonical	2	8	junction_1	3.07245829914744	15	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTATATATAAAATGGTC	NA	False	NA	NA	False	NA	NA	NA	20192379	20163708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_20165461_20166118_20166380_20167641_20167767_20168332_20168570_20171109_20171335_20174491_20174635_20174753_20175011_20176782_20176969_20177197_20177333_20178460_20178628_20179291_20179437_20180121_20180278_20181331_20181452_20183062_20183263_20184232_20184318_20192240
45541	chr7	-	2807	4	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	0	-5	intron_retention	FALSE	canonical	3	87	junction_3	3.77123616632825	31	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTGGAGTCTTTGCTG	2084	False	NA	NA	False	NA	NA	NA	114235542	114230717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_114231141_114231650_114233844_114234361_114234457_114235446
45542	chr10	-	2502	9	NNC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	446.896502979157	1	119	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5270	False	NA	NA	False	NA	NA	NA	62322512	62291050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62292608_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304236_62305679_62305837_62306838_62306915_62316336_62316487_62322436
45543	chr8	-	3427	4	NNC	ENSMUSG00000019731.14	novel	4383	6	NA	NA	4070	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.428210256732	2	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGGTGGTCTCCAGGG	NA	False	NA	NA	False	NA	NA	NA	73241991	73234503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73235933_73236112_73237838_73238504_73238751_73241964
45544	chr2	+	2222	4	Intergenic	novelGene_2820	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	18.8738502225228	31	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCTGGAATTAGAGAATT	NA	False	NA	NA	False	NA	NA	NA	172419586	172468651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172419745_172420215_172420303_172449327_172449895_172467241
45545	chr7	+	1755	14	NNC	ENSMUSG00000004056.16	novel	1392	12	NA	NA	-6518	50	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	143.262989022527	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTTGGTTTGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	27284458	27337645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27284604_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
45546	chr1	+	3682	1	Intergenic	novelGene_334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCACCAAAGGCACATCT	NA	False	NA	NA	False	NA	NA	NA	9007057	9010739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_9007100_9010700
45547	chr2	+	1708	3	Intergenic	novelGene_2819	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	23	junction_2	11.5	56	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATTTATATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	172419572	172468690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172419745_172420215_172420303_172467241
45548	chr2	+	3838	25	NIC	ENSMUSG00000042359.19	novel	8037	27	NA	NA	6	-24	combination_of_known_junctions	FALSE	canonical	3	6	junction_11	10.767427733679	35	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGTGCTCATAGGTGTA	NA	False	NA	NA	False	NA	NA	NA	76236910	76426916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
45549	chr3	-	2240	1	NIC	ENSMUSG00000028062.16	novel	668	4	NA	NA	6	-958	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	45	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGCCATTACGAGGGTG	983	False	NA	NA	False	NA	NA	NA	88460325	88458085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88458100_88460300
45550	chr15	-	4032	16	Antisense	novelGene_ENSMUSG00000054263.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTCCCAGGTGGCATT	NA	False	NA	NA	False	NA	NA	NA	7221913	7194136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_7194174_7196362_7196537_7198488_7198748_7202336_7202465_7202869_7203040_7205038_7205186_7206911_7207076_7207384_7207454_7208277_7208493_7211332_7211511_7214195_7214296_7215044_7215215_7216346_7216509_7217555_7217649_7219594_7219674_7220026
45551	chr4	+	2156	14	ISM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	15	658	0	1	intron_retention	FALSE	canonical	3	103	junction_1	30.7634609974947	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGTGTGTGTGTGTATA	NA	False	NA	NA	False	NA	NA	NA	116664934	116675970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084
45552	chr19	+	2315	5	FSM	ENSMUSG00000024837.16	ENSMUST00000025755.11	2340	5	25	0	25	0	multi-exon	FALSE	canonical	3	122	junction_3	4.08503365959205	181	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTGTGTATATTTG	NA	False	NA	NA	False	NA	NA	NA	25483006	25581693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_25483566_25487043_25487228_25523182_25523467_25537230_25537376_25580550
45554	chr4	+	1102	5	ISM	ENSMUSG00000028850.3	ENSMUST00000030662.3	2004	7	5090	-41	131	41	3prime_fragment	FALSE	canonical	3	33	junction_1	10.5593560409714	15	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCGGTTGCGTGACCAC	NA	False	NA	NA	False	NA	NA	NA	133307145	133311595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929
45555	chrX	-	2413	12	NIC	ENSMUSG00000025268.16	novel	2107	13	NA	NA	17	0	intron_retention	FALSE	canonical	3	63	junction_11	37.6960440303381	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTATTGCCATTTTTG	NA	False	NA	NA	False	NA	NA	NA	149596686	149589419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
45556	chr15	-	1840	3	NIC	ENSMUSG00000058600.14	novel	570	4	NA	NA	0	-2	intron_retention	FALSE	canonical	3	4307	junction_1	677.5	68	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAACATGGTGTCTGTT	361	False	NA	NA	False	NA	NA	NA	34443368	34440657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_34440751_34441377_34442927_34443170
45557	chr2	-	1604	9	FSM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	19	1	19	-1	multi-exon	FALSE	canonical	2	159	junction_3	33.6115214621415	658	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTTTTCATACTTGAT	NA	False	NA	NA	False	NA	NA	NA	128785978	128768188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
45558	chr12	-	4164	2	Genic_Genomic	ENSMUSG00000099759.2	novel	1735	2	NA	NA	50	-6978	multi-exon	FALSE	canonical	3	19	junction_1	0	26	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGGCCATGAGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	20865730	20861359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_20865068_20865274
45559	chr17	+	2084	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234308.2	2084	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	27	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	906	False	NA	NA	False	NA	NA	NA	24851653	24857810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24852833_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
45560	chr6	-	1692	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4630.48644177909	3	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828065	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822303_87822442_87822540_87822637_87822776_87827885
45561	chr9	-	2519	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	3	1	3	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	1	113	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGCTAACAAAGGCTTTA	NA	False	NA	NA	False	NA	NA	NA	13738400	13719090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
45562	chr9	-	3649	16	FSM	ENSMUSG00000049493.14	ENSMUST00000093800.9	3704	16	52	3	52	-3	multi-exon	FALSE	canonical	3	26	junction_4	11.5231168623	27	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGTGTTTATTTCATT	NA	False	NA	NA	False	NA	NA	NA	95727287	95634697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_95636491_95636713_95636839_95643365_95643490_95643986_95644121_95647743_95647859_95651146_95651226_95655570_95655767_95657360_95657457_95658518_95658662_95658741_95658908_95664422_95664505_95666152_95666286_95667542_95667673_95668985_95669150_95677814_95677920_95727223
45564	chr3	-	1971	15	NNC	ENSMUSG00000027679.14	novel	2499	6	NA	NA	10848	35918	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCTGCTGGGAAGAGAT	NA	False	NA	NA	False	NA	NA	NA	34123481	34074250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_34074313_34093674_34093728_34095211_34095304_34100178_34100251_34100583_34100735_34101114_34101208_34101779_34101898_34103301_34103471_34104221_34104302_34108370_34108479_34110476_34110564_34112170_34112264_34115980_34116146_34118257_34118468_34123063
45565	chr11	-	2397	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	217	5	217	-5	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	767	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTATGATGCCTAATTGGT	NA	False	NA	NA	False	NA	NA	NA	113574764	113552149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_113554370_113568129_113568230_113574687
45566	chr17	-	1071	1	ISM	ENSMUSG00000117231.2	ENSMUST00000233879.2	3157	3	6332	31	6270	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGGAGTAAAAACCCTTGC	NA	False	NA	NA	False	NA	NA	NA	71106722	71105651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_71105700_71106700
45567	chr11	-	2443	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	0	19	0	-19	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	169	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATTAAATATATATAAAT	NA	False	NA	NA	False	NA	NA	NA	100661783	100656876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
45569	chr11	+	2609	14	NIC	ENSMUSG00000020818.17	novel	3298	13	NA	NA	42	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	23.8406941640727	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAGAAGGAAAGAGTATTT	NA	False	NA	NA	False	NA	NA	NA	116744162	116765531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116744584_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
45570	chr19	+	4500	2	Antisense	novelGene_ENSMUSG00000010095.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	179	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCTTCCTAACTGCTT	NA	False	NA	NA	False	NA	NA	NA	8685973	8691214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_8688006_8688746
45571	chr18	+	1849	12	ISM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	13124	12	-2672	-12	intron_retention	FALSE	canonical	3	650	junction_4	69.3480859490252	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAAGAAATCAGTGGG	3251	False	NA	NA	False	NA	NA	NA	32983487	32999441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
45572	chr11	-	1457	3	FSM	ENSMUSG00000078812.11	ENSMUST00000153652.8	840	3	-155	-462	-155	0	multi-exon	FALSE	canonical	3	20384	junction_2	449	1	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9198	False	NA	NA	False	NA	NA	NA	69809285	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808328_69808422_69808555_69808742
45573	chr19	-	2698	11	NIC	ENSMUSG00000037578.5	novel	3321	15	NA	NA	35333	-65	intron_retention	FALSE	canonical	3	31	junction_8	12.458330546265	1	91	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTCTTCGTCATAGGACA	892	False	NA	NA	False	NA	NA	NA	44145548	44136141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490
45574	chr1	-	2292	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	-18	9	3	-9	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	1	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTTTGAAGTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	65225656	65197785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
45576	chr2	+	3484	2	Antisense	novelGene_ENSMUSG00000089824.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	146	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAGCAGAGGCCAAGTC	6736	False	NA	NA	False	NA	NA	NA	155936831	155945293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_155940296_155945273
45577	chr17	+	2160	6	Antisense	novelGene_ENSMUSG00000062012.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	157	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGAGGCTGGGATTAGGG	4171	False	NA	NA	False	NA	NA	NA	23794818	23805210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_23796137_23799085_23799207_23799744_23799839_23800032_23800242_23804406_23804547_23804932
45578	chr8	-	1607	1	FSM	ENSMUSG00000030735.7	ENSMUST00000032981.7	1356	1	-26	-225	-26	225	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCATGGATAAAAAAAAAAAA	6313	False	NA	NA	False	NA	NA	NA	67968268	67966661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_67966700_67968300
45579	chr10	+	2663	15	NNC	ENSMUSG00000052291.9	novel	2229	4	NA	NA	-23883	-1749	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	139	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAGGCTGCTGGGAGCAA	6008	False	NA	NA	False	NA	NA	NA	116321073	116417405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_116322191_116328195_116328343_116329599_116329699_116330727_116330778_116330864_116330927_116333990_116334146_116334240_116334368_116335248_116335364_116337090_116337223_116339939_116340024_116342143_116342316_116342944_116343092_116353219_116353296_116384944_116385086_116417366
45582	chr7	-	4262	20	ISM	ENSMUSG00000032875.9	ENSMUST00000209041.2	4516	21	4193	5	4193	-5	3prime_fragment	FALSE	canonical	2	6	junction_5	4.14087121321494	36	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTAAATGATGGCTCCCC	NA	False	NA	NA	False	NA	NA	NA	100539704	100521346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_100522804_100525619_100525890_100525972_100526148_100526914_100527064_100527302_100527371_100527700_100527788_100528011_100528262_100528658_100528964_100529139_100529340_100529807_100529882_100530385_100530600_100530899_100531019_100531426_100531513_100531616_100531727_100531979_100532031_100532322_100532500_100532676_100532770_100532974_100533092_100534883_100535067_100539627
45583	chr2	+	3287	17	Antisense	novelGene_ENSMUSG00000081236.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGCAACTAAACCACTTT	NA	False	NA	NA	False	NA	NA	NA	59765240	59880966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_59765627_59767031_59767098_59773107_59773170_59773283_59773375_59778430_59778647_59787977_59788083_59788775_59788833_59790160_59790450_59792364_59792978_59798973_59799365_59799559_59799763_59807702_59807894_59808883_59809050_59814123_59814318_59831852_59831903_59836387_59836534_59880905
45585	chr1	-	3341	1	ISM	ENSMUSG00000045005.10	ENSMUST00000063982.7	6915	2	3842	11	3840	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	153	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATGTAATGGAGGCGT	NA	False	NA	NA	False	NA	NA	NA	64773068	64769727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_64769700_64773100
45586	chr10	-	2370	1	FSM	ENSMUSG00000111080.2	ENSMUST00000214634.2	3440	1	-1351	2421	-1351	-2421	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGGGACCTTCCCTGTCC	NA	False	NA	NA	False	NA	NA	NA	30483981	30481611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_30481600_30484000
45587	chr2	+	1386	10	FSM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	149	0	20	0	multi-exon	FALSE	canonical	3	1931	junction_6	170.679108342794	1782	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	179813426	179818079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
45588	chr14	+	1475	1	NIC	ENSMUSG00000012405.17	novel	1922	4	NA	NA	192	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	4199261	4200736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_4199300_4200700
45590	chr9	+	2146	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	-73	9	-56	-9	multi-exon	TRUE	canonical	3	166	junction_5	15.4029218007494	1	84	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTTGCTATGGTCTCTA	NA	False	NA	NA	False	NA	NA	NA	108173995	108179492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
45592	chrX	+	2783	7	Genic_Genomic	ENSMUSG00000033343.2	novel	948	1	NA	NA	-4059	383	multi-exon	FALSE	canonical	1	2	junction_6	3.54729944229879	30	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTAGTGTGTGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	71261563	71266953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_71261614_71262220_71262501_71263739_71263837_71264233_71264433_71264562_71264653_71264786_71264860_71264959
45593	chr7	+	2236	14	FSM	ENSMUSG00000002210.12	ENSMUST00000002280.11	2242	14	0	6	0	-6	multi-exon	TRUE	canonical	3	128	junction_3	14.7828462881374	170	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCTCTGGGGTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	24099043	24122197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
45594	chr5	-	2035	10	Antisense	novelGene_ENSMUSG00000106115.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAACCTCAGTGCGCAAG	8565	False	NA	NA	False	NA	NA	NA	121560430	121536057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121536125_121545254_121545346_121546261_121546407_121551050_121551143_121552549_121552655_121552857_121552942_121555437_121555552_121555989_121556080_121558525_121558695_121559352
45595	chr8	-	1997	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	30	426	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	20.0831604418561	267	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCGAAGTTAAAATGTTG	NA	False	NA	NA	False	NA	NA	NA	27713826	27687060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
45596	chr1	-	3246	14	FSM	ENSMUSG00000070643.12	ENSMUST00000153799.8	3693	14	446	1	446	-1	multi-exon	FALSE	canonical	3	38	junction_8	19.9582404271205	113	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGACGTGCCCTTTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	133351669	133310041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_133311663_133312194_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666_133316736_133317061_133317235_133318296_133318384_133318466_133318579_133320810_133321010_133351613
45597	chr3	+	4400	5	ISM	ENSMUSG00000027796.3	ENSMUST00000029371.3	5368	6	26565	863	26565	-863	3prime_fragment	FALSE	canonical	2	9	junction_1	3.04138126514911	68	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCCACATCGTCTTACCT	NA	False	NA	NA	False	NA	NA	NA	54689567	54707815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_54690194_54693484_54693743_54696606_54696829_54701652_54701910_54704778
45598	chr9	-	1999	2	NIC	ENSMUSG00000066892.15	novel	2056	3	NA	NA	-13	0	intron_retention	FALSE	canonical	1	1	junction_1	0	245	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTGCACTTATTTAAC	NA	False	NA	NA	False	NA	NA	NA	20556076	20549081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_20550495_20555490
45600	chr7	+	2815	2	NIC	ENSMUSG00000036854.15	novel	1980	3	NA	NA	16	-1	intron_retention	FALSE	canonical	3	35	junction_1	0	5	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACTGCCTTATGTCTGG	NA	False	NA	NA	False	NA	NA	NA	30251964	30254863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30253810_30253893
45601	chr8	-	3950	2	FSM	ENSMUSG00000046556.8	ENSMUST00000057717.8	7232	2	146	3136	146	-3136	multi-exon	FALSE	canonical	3	26	junction_1	0	36	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCGGTGCAGCCCACAGC	NA	False	NA	NA	False	NA	NA	NA	96058432	96052774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96056441_96058148
45602	chr8	-	2094	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	58	152	45	-148	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	1	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGGTTAGCTTTGGCAT	NA	False	NA	NA	False	NA	NA	NA	110419834	110398108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
45603	chr12	+	1202	7	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-44	-1689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1723.092181709	1	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908814	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913395_78923930_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
45604	chr4	+	3445	27	NNC	ENSMUSG00000043411.16	novel	3392	11	NA	NA	764	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	490.585268149629	1	160	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGTGTTTCAGATTTTCT	1355	False	NA	NA	False	NA	NA	NA	137322302	137383654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137322521_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362212_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380346_137383432
45605	chr8	+	2917	13	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	9	-196	intron_retention	FALSE	canonical	3	325	junction_11	46.5464970635696	18	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGTAAGATAAAAATCAGAAT	3265	False	NA	NA	False	NA	NA	NA	106607521	106615149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106607791_106611132_106612166_106612414_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019
45606	chr6	+	2113	16	NNC	ENSMUSG00000004535.13	novel	3285	18	NA	NA	17	-1711	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	211.594727932642	1	103	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGGAGCAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	52690764	52742054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52690841_52698282_52698418_52704181_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005
45607	chr2	-	2933	18	ISM	ENSMUSG00000038324.14	ENSMUST00000041059.12	3204	19	19272	19	-61	18	3prime_fragment	TRUE	canonical	3	309	junction_12	27.5163367643176	129	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAGACTGATGTGGAC	NA	False	NA	NA	False	NA	NA	NA	155515032	155476209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492506_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909
45608	chr15	+	791	3	Antisense	novelGene_ENSMUSG00000002524.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTCCAGCCACTGCTTCC	983	False	NA	NA	False	NA	NA	NA	75942040	75943147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_75942479_75942599_75942830_75943024
45609	chr2	-	1026	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	21	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	1419.22545386168	16	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9525	False	NA	NA	False	NA	NA	NA	10085300	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068307_10068945_10069123_10073420_10073553_10074503_10074539_10085158
45610	chr13	+	1516	8	FSM	ENSMUSG00000025875.15	ENSMUST00000026993.14	1585	8	66	3	-20	-2	multi-exon	FALSE	canonical	3	352	junction_3	20.9606044468071	286	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGGTTTATGTTCAC	NA	False	NA	NA	False	NA	NA	NA	54937255	54944586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
45611	chr9	+	2816	6	NIC	ENSMUSG00000003299.11	novel	846	8	NA	NA	-4	-15	intron_retention	FALSE	canonical	3	918	junction_4	65.0710381045208	2	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTTTCACAAGACTTGA	NA	False	NA	NA	False	NA	NA	NA	20914206	20920112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20918837_20918926_20919037_20919118
45612	chr8	-	1202	6	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	17	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1062.1115948901	50	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTCTGTGTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	108315073	108307016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307692_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
45613	chr1	-	690	1	FSM	ENSMUSG00000067106.7	ENSMUST00000165691.3	891	1	460	-259	460	259	mono-exon	FALSE	NA	NA	NA	NA	NA	10	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCTGTCTAGAAGACAAA	NA	False	NA	NA	False	NA	NA	NA	79900683	79899993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_79900000_79900700
45615	chr11	+	1759	15	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	-9	0	intron_retention	FALSE	canonical	2	19	junction_8	250.946382190885	1	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120563899	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592060_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120600073_120600169
45616	chr6	-	1610	8	NIC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	-3	344	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	695.556714335461	28	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTGGTTATAGACAAAT	NA	False	NA	NA	False	NA	NA	NA	124942256	124935031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
45617	chr4	+	1590	9	Fusion	ENSMUSG00000084350.2_ENSMUSG00000078502.11	novel	2498	5	NA	NA	-72184	154	multi-exon	TRUE	non_canonical	0	0	junction_1	40.5886375726015	2	78	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	3117	False	NA	NA	False	NA	NA	NA	145239551	145556666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145239640_145311773_145311905_145314001_145314095_145321950_145321988_145322185_145322189_145347127_145347255_145554256_145554373_145555057_145555421_145556034
45618	chr7	+	1933	5	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	7	junction_2	64.227622562259	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	630	False	NA	NA	False	NA	NA	NA	101872270	101887771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101872358_101872585_101872698_101885300_101885762_101886328_101886438_101886607
45619	chr7	+	1961	8	NIC	ENSMUSG00000041769.14	novel	700	6	NA	NA	1665	-8	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	236.409882731372	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAACCCAAATGCCACTGC	NA	False	NA	NA	False	NA	NA	NA	138450253	138484775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_138450395_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
45620	chr18	-	2561	5	Antisense	novelGene_ENSMUSG00000019143.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCGGAAGTGTTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	36921311	36916294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_36916545_36918614_36918694_36918919_36919042_36919163_36919546_36919583
45621	chr16	-	1696	9	NNC	ENSMUSG00000022858.17	novel	3403	9	NA	NA	129	573	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	967.817486667812	1	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTTACAAAGAAGTGTT	2247	False	NA	NA	False	NA	NA	NA	22073868	22064624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065410_22065534_22065617_22065939_22066014_22067185_22067246_22067795_22067884_22069610_22069731_22071356_22071546_22073157_22073321_22073733
45622	chr17	+	2749	15	Antisense	novelGene_ENSMUSG00000025733.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	59	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGCGGGGAGAGGGAACAG	NA	False	NA	NA	False	NA	NA	NA	26057723	26063288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_26058471_26058662_26058866_26058958_26059082_26059228_26059312_26059412_26059543_26059624_26060113_26060335_26060459_26060534_26060651_26060733_26061066_26061153_26061257_26061333_26061393_26062080_26062134_26062913_26062959_26063062_26063147_26063228
45624	chr9	-	2339	4	NIC	ENSMUSG00000032254.11	novel	1946	12	NA	NA	2498	-6358	intron_retention	FALSE	canonical	3	264	junction_2	13.9124245031395	3	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTCTTACTATGCAGGCT	NA	False	NA	NA	False	NA	NA	NA	61851520	61841191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61842833_61843944_61844501_61844711_61844818_61851484
45625	chr8	+	3294	3	FSM	ENSMUSG00000048310.9	ENSMUST00000049699.9	3255	3	-12	-27	-12	27	multi-exon	FALSE	canonical	3	44	junction_1	10	71	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGACTGTGCCATGGGAC	NA	False	NA	NA	False	NA	NA	NA	106627060	106658437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106627173_106639251_106640279_106656282
45627	chr2	-	3545	4	NIC	ENSMUSG00000017307.17	novel	1152	6	NA	NA	-9	-2	intron_retention	FALSE	canonical	3	284	junction_2	30.4740326617051	15	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTGACCTTTAATAG	8217	False	NA	NA	False	NA	NA	NA	164646751	164634689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164637730_164641639_164641866_164644916_164645054_164646609
45628	chr9	+	1627	9	NNC	ENSMUSG00000032336.18	novel	2024	8	NA	NA	-1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	126.778103393291	6	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGTGCTTGGAATAATAC	53	False	NA	NA	False	NA	NA	NA	58489725	58560155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141_58559405_58559644
45629	chr10	+	1465	6	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	-19	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	461.958612864832	14	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGATTATCCAGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	72490707	72510787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492440_72493140_72493221_72509797
45631	chr14	-	1563	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	80.7971998277168	736	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTTCTTTTCTTTTTG	8890	False	NA	NA	False	NA	NA	NA	51033171	51026706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51027470_51027592_51027663_51029429_51029764_51031014_51031332_51033092
45632	chrX	-	1100	6	ISM	ENSMUSG00000031433.16	ENSMUST00000033810.8	2787	7	18	10672	3	-10672	5prime_fragment	FALSE	canonical	3	21	junction_5	5.11468474101777	23	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGTAACTTCATCTAGG	NA	False	NA	NA	False	NA	NA	NA	138899282	138855656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_138855804_138868944_138869349_138894046_138894252_138894660_138894854_138895860_138895978_138899248
45633	chr11	+	1792	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-93	5	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	76.5709434119758	6	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTGAGTGTCAGTTGTC	NA	False	NA	NA	False	NA	NA	NA	5049179	5056098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_5049273_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
45634	chrX	+	2373	22	NNC	ENSMUSG00000031262.13	novel	3085	22	NA	NA	11	-653	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	66.5898196546038	1	86	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGGAAAACACAGAGTGAA	NA	False	NA	NA	False	NA	NA	NA	133208914	133262732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240689_133241132_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
45635	chr15	+	1040	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-23	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	689	113	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATGTGGGTTTTCAGTG	4461	False	NA	NA	False	NA	NA	NA	80139700	80141741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140652_80141131
45636	chr15	+	1978	13	NNC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.6582903867629	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCTTGGGATCCTGGCCC	4739	False	NA	NA	False	NA	NA	NA	76215456	76219097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76215513_76215605_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
45637	chr4	+	1727	11	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	-13	146	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	639.149317452503	1	70	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATGGTCCCTGTAATTG	842	False	NA	NA	False	NA	NA	NA	129083681	129112602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083877_129090632_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101793_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
45638	chr2	-	3719	1	NIC	ENSMUSG00000039826.14	novel	3930	7	NA	NA	6	-717	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCACCCCCGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	29677666	29673947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_29673900_29677700
45639	chr15	+	2528	15	Antisense	novelGene_ENSMUSG00000023169.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCACCACCACCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	96473763	96540237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96474692_96476408_96476511_96476603_96476742_96477193_96477315_96482224_96482324_96483434_96483523_96484755_96484857_96486812_96486892_96487940_96488009_96488292_96488385_96490382_96490462_96507738_96507853_96514022_96514099_96521836_96522050_96540007
45640	chr14	+	2280	3	NIC	ENSMUSG00000039367.12	novel	4461	23	NA	NA	96	-3	intron_retention	FALSE	canonical	3	366	junction_1	10	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATCCCTCTCATTACTC	NA	False	NA	NA	False	NA	NA	NA	20741986	20744915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20742980_20743211_20743302_20743718
45642	chr5	+	2815	20	Antisense	novelGene_ENSMUSG00000098624.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	135	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGGGGGGCAAGGAGGC	438	False	NA	66	True	NA	NA	NA	137293986	137305840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_137294176_137294267_137294339_137294517_137294582_137294728_137294884_137295034_137295233_137295342_137295482_137295584_137295776_137296060_137296252_137296491_137296567_137296650_137296715_137296989_137297146_137297819_137297937_137298018_137298114_137298228_137298417_137298515_137298673_137300385_137300576_137300787_137300942_137301176_137301303_137305307_137305447_137305684
45643	chrX	+	3655	17	Antisense	novelGene_ENSMUSG00000057000.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGCAGGCTTCAAACATC	NA	False	NA	NA	False	NA	NA	NA	134973880	134985946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_134974061_134974168_134974234_134974605_134974779_134975448_134975547_134976213_134976351_134976579_134976638_134976755_134976862_134977006_134977066_134977134_134977209_134977487_134979057_134979531_134979619_134979739_134979999_134980109_134980214_134980310_134980393_134981370_134981527_134981713_134982053_134985837
45644	chr7	+	1495	4	NIC	ENSMUSG00000059070.17	novel	1027	6	NA	NA	8	-1	intron_retention	FALSE	canonical	2	4	junction_3	3864.33783317257	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGATGGTCCTCTGTGTTC	6016	False	NA	NA	False	NA	NA	NA	45367588	45370250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45368764_45368952_45369061_45369343_45369443_45370137
45645	chr8	-	1508	10	NNC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.10780515702	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	NA	False	NA	NA	NA	108151672	108139117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108139633_108139776_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
45646	chr11	-	1939	10	FSM	ENSMUSG00000018593.14	ENSMUST00000018737.13	2300	10	227	134	45	-134	multi-exon	FALSE	canonical	3	577	junction_9	66.8521493786341	1	86	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACAGGCTGAGAAATTGT	3903	False	NA	NA	False	NA	NA	NA	55310679	55285459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
45647	chr5	-	3588	4	ISM	ENSMUSG00000046798.15	ENSMUST00000179804.8	3752	5	458	94	118	0	3prime_fragment	FALSE	canonical	2	3	junction_3	30.169889330626	3	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	5564331	5555108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564231
45648	chr8	-	1374	7	NIC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	1	47	junction_5	768.619704405241	3008	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8424	False	NA	NA	False	NA	NA	NA	85751886	85744559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746680_85750806_85750955_85751733
45649	chr1	-	2794	2	FSM	ENSMUSG00000044783.17	ENSMUST00000126739.2	2780	2	-43	29	11	-29	multi-exon	FALSE	canonical	3	259	junction_1	0	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCATTTCCTTTAAGAAA	8602	False	NA	NA	False	NA	NA	NA	88205344	88202462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_88205008_88205095
45650	chr15	+	1713	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	31	-1	-2	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	616	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	76235524	76238573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
45651	chr13	+	2455	4	Intergenic	novelGene_1390	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_2	9.0921211313239	66	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTACTTGGTCCTCCGAC	NA	False	NA	NA	False	NA	NA	NA	61765167	61783722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_61765281_61776870_61776998_61779171_61779363_61781698
45652	chr4	-	1654	6	FSM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	13	5	13	0	multi-exon	FALSE	canonical	3	286	junction_3	41.9218320210365	180	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCATGTCCTGTTCCT	7089	False	NA	NA	False	NA	NA	NA	126215483	126209844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776_126211985_126212191_126212289_126215234
45653	chr7	+	1720	17	NIC	ENSMUSG00000002963.18	novel	1770	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	58.1882384485903	50	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9315	False	NA	NA	False	NA	NA	NA	44506562	44512074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44506677_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
45654	chr7	-	3892	1	ISM	ENSMUSG00000058761.6	ENSMUST00000080817.6	7147	6	56295	8	41581	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	37	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCAAACAGACTATTTCT	NA	False	NA	NA	False	NA	NA	NA	99573360	99569468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_99569500_99573400
45655	chrX	-	995	4	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	-28	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	995.280864881868	19	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537580	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7534746_7535165_7535243_7535841_7535998_7537381
45656	chr11	+	2133	4	NNC	ENSMUSG00000017837.13	novel	1727	4	NA	NA	437	-7	intron_retention	FALSE	canonical	2	2	junction_1	160.229696234985	7	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAAGTTTCCCGTCCCC	NA	False	NA	NA	False	NA	NA	NA	100514273	100518426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100514450_100515017_100515126_100515768_100516011_100516819
45657	chrX	-	2908	19	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	58	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	24.8682950514391	1	69	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACATTTGTGTTTATATG	NA	False	NA	NA	False	NA	NA	NA	134985933	134972851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975444_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979846_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982182_134985845
45658	chrX	+	1149	5	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-50	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1722.54905590523	123	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTTCATTTTCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	100473290	100492188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483232_100491485
45659	chr8	+	1529	9	NIC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	5	-2	intron_retention	FALSE	canonical	3	1246	junction_3	52.0672641877793	172	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTCTGCCTGATACCCAC	712	False	NA	NA	False	NA	NA	NA	70755427	70765638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
45660	chr3	+	1842	7	ISM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	137	16	39	-16	3prime_fragment	FALSE	canonical	3	403	junction_4	36.7090663944965	363	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTCTGTATA	7169	False	NA	NA	False	NA	NA	NA	108291291	108295479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
45661	chr10	-	1194	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1612.18023249289	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959829	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955554_90957877_90957906_90959419_90959569_90959777
45663	chr16	+	4251	17	Antisense	novelGene_ENSMUSG00000033149.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTCCGGGCGCCCCTCCC	NA	False	NA	NA	False	NA	NA	NA	45567690	45664721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45568295_45569089_45569184_45571716_45571929_45577460_45577608_45578478_45578571_45583272_45583476_45591032_45591134_45592496_45592639_45595306_45595450_45598074_45598165_45600617_45600732_45601665_45601821_45621853_45621993_45623058_45623205_45628490_45628872_45645120_45646461_45664573
45664	chr3	-	1858	6	FSM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	88	0	-12	0	multi-exon	FALSE	canonical	3	57	junction_4	13.2	106	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	NA	NA	NA	86906660	86903140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939_86906213_86906498
45665	chr3	-	1834	13	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-10	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	412.32197336817	1	73	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTAACTTATTTTTCTC	147	False	NA	NA	False	NA	NA	NA	153650114	153628005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628640_153631301_153631450_153631497_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642060_153643341_153643421_153644190_153644279_153644513_153644604_153644706_153644805_153647519_153647608_153650032
45666	chr13	-	3734	8	FSM	ENSMUSG00000021364.17	ENSMUST00000021793.15	3840	8	-19	125	-19	-7	multi-exon	FALSE	canonical	3	52	junction_4	7.79848232226067	8	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACACTAAAACATCTTGCA	7540	False	NA	NA	False	NA	NA	NA	41373900	41335981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373830
45667	chr6	-	4709	2	Antisense	novelGene_ENSMUSG00000030016.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	71	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATAGCCCTGGCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	83963838	83958427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83961055_83961756
45668	chr3	+	1729	16	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-9	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	246.791103747459	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTGTGAAGGTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	69629355	69656380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69629456_69629741_69629788_69631619_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
45669	chr11	+	1511	1	NIC	ENSMUSG00000018470.9	novel	2538	14	NA	NA	18	-4357	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTCAAATCCCACTAC	NA	False	NA	NA	False	NA	NA	NA	69217101	69218612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69217100_69218600
45670	chr16	-	1893	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	-36	15	-36	-15	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	552	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTTGTCAGAAATGACT	NA	False	NA	NA	False	NA	NA	NA	65359648	65336028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
45673	chr19	-	1883	12	NIC	ENSMUSG00000024926.11	novel	1386	13	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	222	junction_8	63.8080800085707	23	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGCTATCAGGAGTTCTT	3632	False	NA	NA	False	NA	NA	NA	5660073	5653045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
45674	chr10	-	2880	25	NNC	ENSMUSG00000025357.9	novel	2834	24	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_24	20.1007445273939	93	8	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	9199	False	NA	NA	False	NA	NA	NA	128580736	128556002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572444_128572588_128572877_128573014_128579664_128579862_128580676
45675	chr17	-	2358	12	NNC	ENSMUSG00000059208.16	novel	2550	16	NA	NA	0	-61	intron_retention	FALSE	non_canonical	0	0	junction_1	859.512912224704	1	142	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTAGTTGTGGCATCTTG	5756	False	NA	NA	False	NA	NA	NA	33904377	33865273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865647_33868568_33869372_33871246_33871301_33877361_33877431_33879129_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33896206_33896415_33904236
45677	chr4	-	1931	10	NIC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	148	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	415.422081951405	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTGTCTGTGTTTGAA	8668	False	NA	NA	False	NA	NA	NA	117145821	117128661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117145559
45678	chr12	-	2511	1	FSM	ENSMUSG00000020648.4	ENSMUST00000219855.2	296	1	-59	-2156	-9	2156	mono-exon	FALSE	NA	NA	NA	NA	NA	19	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGTCTGTGCCCCGATG	9051	False	NA	NA	False	NA	NA	NA	31704834	31702323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_31702300_31704800
45680	chr10	-	1001	6	ISM	ENSMUSG00000019813.17	ENSMUST00000191498.2	759	7	-8	9189	0	-512	5prime_fragment	FALSE	canonical	3	131	junction_5	31.5442546274278	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTAAAGGGTTTTTTGT	367	False	NA	NA	False	NA	NA	NA	41685626	41605031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
45682	chr16	-	2496	16	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	0	-5	intron_retention	FALSE	canonical	0	0	junction_2	24.4763831750799	96	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGTTGGTGGGGGCTCA	8192	False	NA	NA	False	NA	NA	NA	4782068	4759304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4759852_4760074_4760130_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
45683	chr14	+	1152	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	333	469	36	-109	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTTATCAGTGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	21881669	21895478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
45684	chr14	+	1552	11	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	-25	4	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	250.336753194572	147	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATAGTTTTGTTGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	62569548	62610445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62598063_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
45685	chr12	-	1076	1	ISM	ENSMUSG00000097832.2	ENSMUST00000180988.2	1483	2	41	1824	41	-1824	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGAAGGCAGGTTTCCCTA	3424	False	NA	NA	False	NA	NA	NA	110811609	110810533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110810500_110811600
45686	chr6	-	4009	12	Antisense	novelGene_ENSMUSG00000030207.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	178	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGCGCGCGCCGCGTCCT	NA	False	NA	NA	False	NA	NA	NA	135213203	135175045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_135175099_135186029_135186414_135193868_135194074_135195674_135195802_135202129_135202283_135202650_135202794_135203845_135203984_135204144_135204250_135205431_135205567_135208618_135208736_135210252_135210468_135210969
45687	chr11	-	2429	11	NNC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	-13816	-1115	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	109	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGATCCGGAGGGGATGG	NA	False	NA	NA	False	NA	NA	NA	117730734	117716774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_117716831_117718902_117718995_117723169_117723274_117723351_117723401_117725590_117725677_117725769_117725845_117725970_117726062_117726320_117726408_117726491_117726758_117727231_117727336_117729315
45688	chr11	-	1866	3	ISM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	7373	0	7338	0	3prime_fragment	FALSE	canonical	3	88	junction_1	11.5	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	8887	False	NA	NA	False	NA	NA	NA	20192045	20188385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_20188589_20189195_20190699_20191885
45689	chr14	+	1852	8	NNC	ENSMUSG00000040997.15	novel	2401	7	NA	NA	16	-3	intron_retention	FALSE	non_canonical	0	0	junction_7	131.104880900439	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTGATGACACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	54496704	54506618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224_54505825_54506354
45690	chr13	+	2652	5	NNC	ENSMUSG00000025870.11	novel	556	2	NA	NA	-5887	1635	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	30.0083321762473	4	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGAAGTGACTTTACT	NA	False	NA	NA	False	NA	NA	NA	54716940	54730576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54717069_54722361_54722468_54723562_54723762_54726605_54726782_54728533
45691	chr10	+	1782	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	41	11	-9	-11	multi-exon	FALSE	canonical	3	928	junction_7	94.1772102940808	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAAGATTATCCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	72490717	72510785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
45692	chr3	+	3839	2	ISM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	76965	3477	76965	-3477	3prime_fragment	FALSE	canonical	3	61	junction_1	0	40	74	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCCCCCCCCCCCA	NA	False	NA	NA	False	NA	NA	NA	52252721	52257165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_52253812_52254416
45693	chr3	+	300	1	ISM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	81457	3129	81457	-3129	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCATCTTAAGTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	52257213	52257513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_52257200_52257500
45694	chr7	-	2688	18	NNC	ENSMUSG00000001248.16	novel	2735	19	NA	NA	18	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	92.7901229679928	8	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTATGGCTTGTACCTGTG	5774	False	NA	NA	False	NA	NA	NA	30850419	30829554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30834950_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30850320
45695	chr6	-	1979	13	FSM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	20	3	0	3	multi-exon	FALSE	canonical	3	139	junction_5	17.8737858950537	479	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATTCTTTCTCT	4626	False	NA	NA	False	NA	NA	NA	86770546	86713825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
45696	chr9	-	2461	16	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	4	-1082	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	481.383266108087	1	117	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAAAGAAAAAGATCTATT	8719	False	NA	NA	False	NA	NA	NA	31123107	31061936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064851_31068990_31069144_31069790_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
45698	chr2	-	2777	12	NIC	ENSMUSG00000027210.21	novel	2831	12	NA	NA	-898	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	22.3299820683661	3	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTAGGCTTTGGTGTTTTT	643	False	NA	NA	False	NA	NA	NA	115893909	115693549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_115694995_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115872419_115872609_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668
45700	chr10	+	1165	9	NIC	ENSMUSG00000035351.17	novel	1267	10	NA	NA	13	5	combination_of_known_junctions	FALSE	canonical	3	12	junction_8	178.136885568374	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTATTGTGTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	87982866	88014257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88013995
45701	chr4	+	692	4	ISM	ENSMUSG00000011257.20	ENSMUST00000078734.12	2700	14	12871	47	1002	-37	3prime_fragment	FALSE	canonical	3	415	junction_3	18.8325958557674	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGTTTCTCAAATAAAGGA	6028	False	NA	NA	False	NA	NA	NA	123189758	123192578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_123189851_123191471_123191566_123191653_123191887_123192305
45702	chr1	+	1889	15	NNC	ENSMUSG00000026427.17	novel	2504	16	NA	NA	44	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	236.526792286599	1	76	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTTTACTGAAAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	131080961	131101201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088199_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095969_131098673_131098849_131101040
45703	chr1	+	2866	5	FSM	ENSMUSG00000043015.16	ENSMUST00000185790.7	1571	5	-83	-1212	11	-5	multi-exon	FALSE	canonical	1	5	junction_2	17.1537167984084	57	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCCCTGGGCTCCGAGT	NA	False	NA	NA	False	NA	NA	NA	52669872	52691073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_52670011_52676523_52676640_52684419_52684646_52687908_52688086_52688864
45704	chr1	-	1364	10	NNC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	0	-210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	412.994604335065	14	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCTGTGTCTGCGTGG	NA	False	NA	NA	False	NA	NA	NA	92401489	92367210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_92367552_92379738_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
45706	chr8	-	320	1	Intergenic	novelGene_1653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATTTTAAAAATTAAACA	9936	False	NA	NA	False	NA	NA	NA	70032765	70032445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_70032400_70032800
45709	chr11	+	1928	5	NNC	ENSMUSG00000000581.9	novel	2981	5	NA	NA	5	-988	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	289.944283440802	26	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATTTTATTATAGAGTTT	7336	False	NA	NA	False	NA	NA	NA	17207598	17218188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_17207659_17212647_17212769_17213642_17213676_17213950_17214007_17216530
45710	chr13	-	1361	7	NNC	ENSMUSG00000021477.10	novel	1971	8	NA	NA	-44	-585	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	633.027382240821	2	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGGGACTTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	64518164	64511612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64512039_64514238_64514456_64514681_64514878_64515673_64515821_64515929_64516053_64516841_64516979_64518049
45711	chr13	+	3276	9	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	-27	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	7.40671148351277	28	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACGTCGTGCATCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	56586140	56622049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56619742_56620252_56620373
45712	chr1	+	2556	16	NIC	ENSMUSG00000026342.11	novel	756	6	NA	NA	131	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	24.987107786928	56	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTAAGCGATGACAT	NA	False	NA	NA	False	NA	NA	NA	125488462	125523557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_125488555_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
45713	chr19	+	872	6	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	1691	-308	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4627.96407073348	2	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACATTGAACTTTTTCCT	3709	False	NA	NA	False	NA	NA	NA	8947270	8955535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8947352_8949877_8950001_8950330_8950473_8954681_8954855_8954948_8955074_8955307
45714	chr2	-	2425	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	20	13	20	-13	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	425	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGATTGTCAGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	164285086	164266179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
45715	chr5	-	1990	4	NNC	ENSMUSG00000028933.12	novel	3247	3	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.5322083904833	130	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATTTCTATATTTCAT	NA	False	NA	NA	False	NA	NA	NA	25910778	25894815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25895487_25896692_25897827_25903248_25903331_25910675
45716	chr19	-	1159	5	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-15	0	intron_retention	FALSE	canonical	3	1402	junction_4	914.132751573862	477	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	NA	NA	NA	4092233	4090284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4090540_4090707_4091086_4091397_4091486_4091583_4091691_4091902
45717	chr11	-	2935	13	FSM	ENSMUSG00000017405.15	ENSMUST00000131015.8	2561	13	-1	-373	-1	-38	multi-exon	FALSE	canonical	3	30	junction_7	9.49085817452189	2	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAAGGTTTCAAAGTATC	6295	False	NA	NA	False	NA	NA	NA	78067454	78056973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
45718	chr9	+	1580	4	NNC	ENSMUSG00000009927.10	novel	577	4	NA	NA	-8	-9	intron_retention	TRUE	canonical	0	0	junction_3	5501.62547697395	9	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGAATCAAATGAATGGG	NA	False	NA	NA	False	NA	NA	NA	44318948	44321477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44319055_44319284_44319381_44319982_44320414_44320530
45720	chr4	-	2289	6	FSM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	0	266	0	-2	multi-exon	FALSE	canonical	3	66	junction_1	6.70522184569608	216	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTTTCTCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	117749229	117746105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
45721	chr13	+	297	2	FSM	ENSMUSG00000049517.9	ENSMUST00000224430.2	450	2	155	-2	155	2	multi-exon	FALSE	canonical	3	19809	junction_1	0	7	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATTTTGTGTCTTACT	NA	False	NA	NA	False	NA	NA	NA	91072458	91072845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_91072566_91072655
45722	chr11	+	2815	18	NNC	ENSMUSG00000020549.15	novel	3329	24	NA	NA	-1879	0	intron_retention	FALSE	canonical	0	0	junction_12	84.3910817046462	1	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTCTTGACAACAGTTTG	NA	False	NA	NA	False	NA	NA	NA	64874419	64892893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889297_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
45723	chr4	+	2519	16	NNC	ENSMUSG00000028224.15	novel	2533	16	NA	NA	16	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	61.9789928568991	259	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-29	True	NA	NA	False	NA	NA	NA	15957940	15992589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981304_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
45724	chr15	-	1774	1	FSM	ENSMUSG00000068226.4	ENSMUST00000180449.2	441	1	-255	-1078	-255	1078	mono-exon	FALSE	NA	NA	NA	NA	NA	4552	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGCTATCCTTTTAATG	NA	False	NA	NA	False	NA	NA	NA	78439303	78437529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_78437500_78439300
45725	chr7	-	1197	13	ISM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	51	4543	4	-1835	5prime_fragment	FALSE	canonical	3	1600	junction_10	98.7226755445104	1	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCATCGTGTGGGGGGA	NA	False	NA	NA	False	NA	NA	NA	33929710	33905297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
45726	chr19	-	1566	1	Genic_Genomic	ENSMUSG00000071654.7	novel	NA	NA	NA	NA	26	682	mono-exon	FALSE	NA	NA	NA	NA	NA	2241	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCTCTGAGTTAGGTGG	NA	False	NA	NA	False	NA	NA	NA	8858261	8856695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_8856700_8858300
45727	chr10	-	2725	13	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	402	0	intron_retention	FALSE	canonical	3	9	junction_12	61.2582760848597	139	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTGTCTCATGGATTCCA	NA	False	NA	NA	False	NA	NA	NA	79386241	79376078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385688_79386149
45728	chr10	-	1814	8	FSM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	84	0	-3	0	multi-exon	FALSE	canonical	3	145	junction_7	14.1608831731957	311	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCCCCGTGTTTGTC	9766	False	NA	NA	False	NA	NA	NA	79752756	79745885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
45729	chr3	-	926	5	Antisense	novelGene_ENSMUSG00000068744.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCTCCCGCCGAGGACT	NA	False	NA	NA	False	NA	NA	NA	108295210	108292564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_108292723_108293606_108293722_108293813_108294051_108294591_108294718_108294920
45730	chr7	+	2320	18	Intergenic	novelGene_2921	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	48	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCTACCAGGGGCACTGT	NA	False	NA	NA	False	NA	NA	NA	29940759	29969727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_29941259_29941445_29941489_29941567_29941709_29941828_29941938_29942170_29942303_29942467_29942567_29942855_29942959_29943256_29943383_29943894_29943966_29944713_29944937_29947043_29947084_29951795_29951816_29953406_29953528_29953609_29953682_29955232_29955358_29957482_29957594_29967236_29967374_29969579
45731	chr1	+	1989	2	FSM	ENSMUSG00000046330.11	ENSMUST00000211963.2	449	2	-491	-1049	0	2	multi-exon	FALSE	canonical	2	15690	junction_1	0	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTTTGCCTTGT	NA	False	NA	NA	False	NA	NA	NA	72750448	72752778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_72750960_72751300
45732	chr5	-	2376	4	NNC	ENSMUSG00000044968.17	novel	3954	5	NA	NA	28051	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.055530687352	32	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAAGATACCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	21878341	21867898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_21869874_21870176_21870361_21875486_21875602_21878239
45733	chr9	-	1304	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7046.88005826377	17	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386742_78387234_78387431_78387520_78387560_78387757_78387971_78388920
45734	chr6	+	2412	8	Antisense	novelGene_ENSMUSG00000030298.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCGGTGCCGGCCCGCA	2754	False	NA	NA	False	NA	NA	NA	113705051	113717660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_113706703_113707294_113707419_113707733_113707869_113711506_113711643_113712019_113712172_113713333_113713449_113714914_113714964_113717610
45736	chr11	+	1729	11	FSM	ENSMUSG00000059552.14	ENSMUST00000005371.12	1772	11	43	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	1	79	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69471227	69482699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
45737	chr13	-	2163	9	NIC	ENSMUSG00000039233.13	novel	1855	13	NA	NA	-7	-473	intron_retention	FALSE	canonical	3	105	junction_3	18.2718191486234	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTAAACTAGGGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	14214188	14180299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14180593_14181026_14181123_14183199_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
45738	chr12	+	4485	4	ISM	ENSMUSG00000021133.10	ENSMUST00000068519.7	4977	6	77867	18	-282	-18	3prime_fragment	FALSE	canonical	3	47	junction_1	4.54606056566195	47	78	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTTATGAAGGCAGATG	NA	False	NA	NA	False	NA	NA	NA	80915199	80927591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_80915399_80916848_80916985_80920922_80921351_80923869
45740	chr3	+	3755	3	ISM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	72281	-2088	68216	2088	3prime_fragment	FALSE	canonical	3	388	junction_2	31	1	129	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTTGTGCTTTGCAT	8979	False	NA	NA	False	NA	NA	NA	63275796	63291132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_63275996_63276300_63276378_63287653
45741	chr7	+	1273	1	Antisense	novelGene_ENSMUSG00000043432.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGAGGCCAAAGGACCAG	80	False	NA	NA	False	NA	NA	NA	4151481	4152754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_4151500_4152800
45743	chr16	-	725	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	1368	0	-1368	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGATGTGGGCAAGGG	NA	False	NA	NA	False	NA	NA	NA	45975440	45974715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45974700_45975400
45744	chr9	+	1679	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	705.174350005249	1	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	1145	False	NA	NA	False	NA	NA	NA	108437634	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438988_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
45745	chr12	+	4455	8	NIC	ENSMUSG00000042700.17	novel	7488	21	NA	NA	-24012	-7119	intron_retention	FALSE	canonical	3	123	junction_3	21.7612274563767	4	75	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAATTTCAAGGTAGAAG	NA	False	NA	NA	False	NA	NA	NA	82443376	82480615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82472230_82479526_82479767_82480462
45746	chr8	+	4474	5	ISM	ENSMUSG00000036054.16	ENSMUST00000136758.2	3517	6	2052	-994	287	994	3prime_fragment	FALSE	canonical	3	113	junction_2	4.30116263352131	209	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTCTTTGTACCAGCCA	3541	False	NA	NA	False	NA	NA	NA	70689324	70708407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228
45747	chr7	+	1389	6	NNC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	702.694414379394	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115692548	115704445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446_115703481_115703557
45748	chr12	+	980	5	ISM	ENSMUSG00000021222.10	ENSMUST00000223291.2	2005	13	11775	3	308	2	3prime_fragment	FALSE	canonical	3	253	junction_3	11.409973707244	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTAATTTTGCCAAAGT	NA	False	NA	NA	False	NA	NA	NA	83584548	83588691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
45749	chr16	+	2232	11	NNC	ENSMUSG00000022808.6	novel	2457	13	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	169.693252664919	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGATTTGTATTATTTT	9283	False	NA	NA	False	NA	NA	NA	33071813	33119930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33108080_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
45750	chr11	+	2635	5	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	-6	0	intron_retention	TRUE	canonical	3	43	junction_1	113.778293184597	127	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	113575259	113585473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_113576098_113578599_113580048_113582554_113582660_113583220_113583329_113585337
45751	chr2	+	2107	8	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	589	1	intron_retention	FALSE	canonical	3	48	junction_6	257.437846669753	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTAGTCTGTTTTGTTTGC	2980	False	NA	NA	False	NA	NA	NA	31495306	31507533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31505509_31505699_31506190
45752	chr13	-	1632	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	208.621667139346	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312051_34312127_34312515_34312854_34312966_34313228_34313338_34314159
45753	chr15	-	2794	16	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	0	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	331.483507214998	1	164	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCACAAATAAACGTCATC	NA	False	NA	NA	False	NA	NA	NA	81614081	81588485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593738_81594566_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602939_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613925
45755	chr1	+	2174	8	NNC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	36	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	23.1252137331546	109	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCGTTATTTATTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	136343044	136367894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367444
45757	chr14	+	1616	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	49	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	669.287535783803	27	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAACATGATTGTGTG	1735	False	NA	NA	False	NA	NA	NA	26359277	26377988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050_26377733_26377807
45758	chr7	-	1965	5	ISM	ENSMUSG00000066568.13	ENSMUST00000206388.2	1598	10	35817	-1069	-3942	0	3prime_fragment	FALSE	canonical	3	46	junction_1	241.719879199043	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTAACTATTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	34056923	34044070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_34045384_34050710_34050943_34052814_34052987_34053089_34053273_34056858
45760	chr11	-	1995	9	FSM	ENSMUSG00000007646.14	ENSMUST00000067692.13	3944	9	26	1923	9	23	multi-exon	FALSE	canonical	3	130	junction_1	12.5940213990607	635	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATATGTTTGAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	87295323	87269393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
45761	chr19	-	4455	20	ISM	ENSMUSG00000036098.16	ENSMUST00000189897.2	3339	26	17360	-2103	-5716	-10	3prime_fragment	FALSE	canonical	2	6	junction_18	4.34521419801059	52	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTATCTGCACTTGCCTCT	3793	False	NA	NA	False	NA	NA	NA	10200608	10185645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_10187830_10187962_10188038_10189071_10189178_10189509_10189585_10189805_10189894_10191422_10191675_10192123_10192292_10192380_10192470_10193105_10193175_10193424_10193514_10193783_10193857_10193981_10194143_10194783_10194894_10195511_10195624_10195827_10196029_10196401_10196493_10196885_10196997_10197158_10197236_10198541_10198738_10200480
45762	chr4	+	973	2	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	88	382	multi-exon	FALSE	canonical	0	0	junction_1	0	1	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATATTTGTGTAGTTCAG	116	False	NA	NA	False	NA	NA	NA	12232920	12234333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12233710_12234149
45764	chr6	+	4260	11	NIC	ENSMUSG00000001632.17	novel	4826	13	NA	NA	2852	-7	intron_retention	FALSE	canonical	3	111	junction_5	26.3142546920866	62	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAATAAAGTCTATTTA	3376	False	NA	NA	False	NA	NA	NA	113287241	113301795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113287370_113291551_113292512_113293488_113293652_113294020_113294153_113294508_113294638_113295372_113296323_113296628_113296914_113297394_113297543_113298689_113299048_113299373_113299529_113300943
45765	chr1	+	2189	7	FSM	ENSMUSG00000026036.18	ENSMUST00000087521.13	3769	7	370	1210	-107	-20	multi-exon	FALSE	canonical	3	215	junction_3	28.6787765119473	23	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACATTAAATAAACCTT	NA	False	NA	NA	False	NA	NA	NA	58484679	58501405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
45766	chr6	-	1631	9	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-61	-58	intron_retention	FALSE	canonical	3	134	junction_8	102.009114176136	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTATCCCCCTGGCCTGGC	NA	False	NA	NA	False	NA	NA	NA	113354398	113343934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113352221_113352800_113353026_113353852_113353907_113354276
45767	chr8	-	1636	3	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20973	-721	3543	721	intron_retention	FALSE	canonical	3	94	junction_1	2	207	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTGACTGTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	122650670	122642143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122643247_122644726_122644883_122650293
45768	chr17	+	3611	10	NIC	ENSMUSG00000023952.14	novel	2929	12	NA	NA	27	-5	intron_retention	FALSE	canonical	1	1	junction_1	20.2947417625817	33	45	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACACTCTGCTTATTCT	NA	False	NA	NA	False	NA	NA	NA	46472113	46480289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46472218_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476556_46476703_46476924_46477236_46477373_46477517_46478321_46478651_46478817_46479071
45769	chr7	-	2533	15	NNC	ENSMUSG00000030718.10	novel	2772	14	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	142.261131697441	16	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATTTGTCTGAGGAGC	NA	False	NA	NA	False	NA	NA	NA	100021138	99975949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99992935_99993079_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004008_100004473_100004569_100020929
45770	chr1	-	1738	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	6	2636	-5	660	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	1401	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATAGTTTGCTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	165064506	165042490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
45771	chr11	+	1127	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-1	-36	multi-exon	FALSE	canonical	0	0	junction_1	0	106	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTGGACAGTCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653618	120655209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654125_120654588
45772	chrX	+	1995	8	NNC	ENSMUSG00000096834.8	novel	2026	7	NA	NA	-17	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	4.91146098219174	16	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	147446576	147486845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_147446686_147463739_147463866_147464585_147464666_147468313_147469041_147469088_147469273_147478430_147478513_147479317_147479368_147486208
45773	chr10	-	2217	8	NNC	ENSMUSG00000000901.18	novel	2288	8	NA	NA	4	-1	intron_retention	FALSE	canonical	0	0	junction_1	75.1434003239466	2	71	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCGCCTGTCTGTTTTTCT	5087	False	NA	NA	False	NA	NA	NA	75768305	75759057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75759912_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
45774	chr10	+	3061	10	Antisense	novelGene_ENSMUSG00000055531.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	143	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCGAGGCAGCAGCAGCGG	NA	False	NA	NA	False	NA	NA	NA	117183992	117212851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117185375_117191841_117192028_117194895_117195057_117196365_117196456_117196756_117197251_117197912_117198093_117198879_117199026_117201985_117202090_117203683_117203893_117212742
45775	chr16	+	2211	12	NNC	ENSMUSG00000033031.14	novel	3974	21	NA	NA	-2650	-398	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	71.0006402019792	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTGTTCTTTGCTTTT	7237	False	NA	NA	False	NA	NA	NA	48826123	48839616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48826211_48827412_48827555_48829440_48829541_48831071_48831176_48833554_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
45777	SIRV3	+	1964	3	NNC	SIRV3A	novel	2467	5	NA	NA	2228	-53	intron_retention	FALSE	canonical	0	0	junction_1	1116	1	87	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTAAGCATGCAAACAT	NA	False	NA	NA	False	NA	NA	NA	6231	8884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_7987_8127_8208_8755
45778	chr2	-	1694	9	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	394	-349	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	227.150796553743	1	28	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTAGCCTTCCCACCTCTA	NA	False	NA	NA	False	NA	NA	NA	165703531	165669450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165687945_165688160_165693919_165694069_165703460
45779	chr2	+	1872	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	708.850320490514	1	90	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGATAGTATGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	130116346	130121221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118947_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
45781	chr6	+	1221	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.04724481692	5	4	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	124689310	124693913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124689443_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692999_124693568
45782	chr5	-	418	1	Antisense	novelGene_ENSMUSG00000057406.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATCAACAGTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	34029863	34029445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_34029400_34029900
45783	chr5	-	2026	1	Antisense	novelGene_ENSMUSG00000057406.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTATCTGCAGACTTTAG	NA	False	NA	NA	False	NA	NA	NA	34028936	34026910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_34026900_34028900
45784	chr9	+	1847	3	ISM	ENSMUSG00000032103.11	ENSMUST00000135768.2	2144	4	871	-5	0	5	3prime_fragment	FALSE	canonical	3	88	junction_2	8	405	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTCTTTTTCAAGGC	NA	False	NA	NA	False	NA	NA	NA	35470761	35478439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_35470814_35476079_35477152_35477716
45785	chr4	+	2230	5	Intergenic	novelGene_2165	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	254	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCGAATCCAGCGGAAGTG	6922	False	NA	NA	False	NA	NA	NA	149552041	149569675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_149553667_149554094_149554240_149557741_149557930_149558890_149559053_149569565
45786	chr11	-	1384	5	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	393	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2841.43505776571	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120238524	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238176_120238461
45787	chr6	+	1455	9	NNC	ENSMUSG00000030007.9	novel	1561	11	NA	NA	305	-92	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2050.78288404697	3	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5996	False	NA	NA	False	NA	NA	NA	85438024	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443626_85443704_85444008_85444142_85444560_85444768_85445034
45788	chr5	+	1510	12	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-6	554	combination_of_known_splicesites	FALSE	canonical	1	15	junction_9	291.172324086699	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTTTGTGGTAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	31652104	31668757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31664817_31664909_31666642_31666751_31668175
45789	chr10	-	4192	6	FSM	ENSMUSG00000060301.7	ENSMUST00000039271.7	4229	6	27	10	6	-10	multi-exon	FALSE	canonical	1	4	junction_1	2.33238075793812	18	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATTTGCTGTGTCAGGA	NA	False	NA	NA	False	NA	NA	NA	78933407	78900217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_78903886_78904467_78904563_78924120_78924214_78928245_78928339_78930264_78930392_78933291
45790	chr6	-	2378	4	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5454	-12	intron_retention	FALSE	canonical	3	98	junction_3	15.6914697279198	14	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCACCAAGGTAGATTTA	2738	False	NA	NA	False	NA	NA	NA	83675071	83669799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83674051_83674952
45791	chr7	+	2678	5	FSM	ENSMUSG00000109398.3	ENSMUST00000207173.3	2950	5	0	272	0	-272	multi-exon	FALSE	canonical	3	12	junction_1	2.6809513236909	68	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACGCATGTGTGTCTGTA	3012	False	NA	NA	False	NA	NA	NA	6346757	6358683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6346862_6349343_6349432_6351435_6351563_6352716_6352813_6356420
45793	chr9	-	3760	20	NNC	ENSMUSG00000036395.16	novel	3701	20	NA	NA	5	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	8.00173111464169	24	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAATTATCTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	26717723	26674348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_26676120_26676397_26676515_26676875_26676988_26677280_26677369_26678372_26678452_26678690_26678763_26679015_26679157_26679714_26679822_26680331_26680413_26681035_26681175_26682323_26682409_26685268_26685340_26689314_26689397_26691969_26692063_26703077_26703187_26705378_26705475_26706081_26706151_26707701_26707900_26708064_26708185_26717593
45794	chr11	-	1193	8	NIC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	119	-461	combination_of_known_splicesites	FALSE	canonical	2	35	junction_1	475.273111602418	31	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATCTCTCAGACTCTG	NA	False	NA	NA	False	NA	NA	NA	21521815	21507247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_21507569_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
45795	chr11	+	1744	7	NNC	ENSMUSG00000010362.10	novel	985	7	NA	NA	6	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	530.417052893287	4	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGGTGTCTTGTAAATAG	NA	False	NA	NA	False	NA	NA	NA	101518026	101526909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101518147_101519098_101519279_101521063_101521187_101521645_101522329_101524510_101524727_101525613_101525700_101526573
45796	chr4	+	2440	9	NNC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.4255996272056	5	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATAAATGTGTTTATT	-7	True	NA	NA	False	NA	NA	NA	44756638	44932205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44756693_44761849_44762479_44893530_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
45797	chr6	-	1847	4	NIC	ENSMUSG00000032641.19	novel	2075	5	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	2	13	junction_2	34.4512538072113	30	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTATAAAGTGAGAATTGAT	NA	False	NA	NA	False	NA	NA	NA	134874850	134846127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134847407_134864592_134864749_134873820_134874177_134874794
45798	chr6	+	1300	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	935.045821069748	5675	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGATATAAATACATTTG	NA	False	NA	NA	False	NA	NA	NA	86986215	87005429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86986492_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
45799	chr6	-	2715	16	NNC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	26	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	100.059626667747	1	111	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGTATCGGAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	146479252	146451135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465014_146467125_146467201_146467990_146468194_146476199_146476275_146477722_146477959_146478798
45800	chr8	+	3283	13	NIC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	-19	-14	combination_of_known_junctions	FALSE	canonical	1	37	junction_11	40.1631222502545	126	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCTGAGCCTCGACGCC	NA	False	NA	NA	False	NA	NA	NA	72022372	72039931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72022486_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
45802	chr2	-	3551	9	Antisense	novelGene_ENSMUSG00000087739.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	160	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCAGTAACCAGATTCAG	NA	False	NA	NA	False	NA	NA	NA	103887795	103860688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_103860788_103863950_103864108_103873250_103873355_103876001_103876204_103878274_103878321_103880611_103880699_103881476_103881599_103883706_103883825_103885179
45803	chr3	-	1308	5	FSM	ENSMUSG00000005779.13	ENSMUST00000133412.8	666	5	-72	-570	27	-6	multi-exon	FALSE	canonical	3	1712	junction_2	94.1604348970416	35	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGCTGAGTTGGATTTT	NA	False	NA	NA	False	NA	NA	NA	94794245	94791638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
45804	chr5	-	1421	8	Antisense	novelGene_ENSMUSG00000029131.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCACAGCTGCGCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	29972079	29941058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_29941114_29953341_29953390_29955925_29956048_29957398_29957455_29958537_29958659_29969401_29969514_29970495_29970644_29971320
45805	chr16	+	3953	25	NIC	ENSMUSG00000022702.17	novel	4218	25	NA	NA	-11	0	combination_of_known_junctions	TRUE	canonical	2	5	junction_1	34.7319097596944	77	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTGCCTTCCCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	18695775	18789059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18695965_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187_18746274_18751617_18751813_18753767_18753930_18765095_18765298_18766163_18766269_18767885_18768035_18769924_18770087_18770406_18770466_18770813_18770920_18772744_18772868_18773359_18773524_18774918_18775008_18788189
45806	chr5	+	2541	14	NNC	ENSMUSG00000029141.17	novel	2499	14	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	33.8648549733623	197	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAACTGAGGTGATGATC	NA	False	NA	NA	False	NA	NA	NA	31684340	31711380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31700980_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
45807	chrX	-	1335	4	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	104	-10675	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	118.838826427505	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATAAACAGTTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	12539803	12531792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_12532634_12535765_12535886_12539264_12539400_12539564
45809	chr11	-	1523	1	NIC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-906	19	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTTTTCCAATATCAGCT	NA	False	NA	NA	False	NA	NA	NA	97670367	97668844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97668800_97670400
45810	chr10	+	1766	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	3318.14612824617	3	102	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTATGTCTGTTTATG	NA	False	NA	NA	False	NA	NA	NA	127919174	127926138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925033_127925887
45811	chr5	-	2895	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	12	-33	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	88.3860778937051	2	151	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAGTTTGATAAAATATT	NA	False	NA	NA	False	NA	NA	NA	5609501	5587486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606071_5606157_5607212_5607407_5609432
45812	chr8	+	2052	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	-40	0	-40	0	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	273	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTTTCTGCAACAAT	NA	False	NA	NA	False	NA	NA	NA	13957762	13990522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
45813	chr1	-	2936	12	NIC	ENSMUSG00000026098.14	novel	3054	13	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	2	22	junction_9	42.6571959185829	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6067	False	NA	NA	False	NA	NA	NA	53336162	53228345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53314228_53314412_53321099_53321252_53336044
45814	chr11	-	1160	5	ISM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	4017	1191	531	2	3prime_fragment	FALSE	canonical	3	4151	junction_3	141.088624630053	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	NA	False	NA	-84	True	NA	NA	NA	106675341	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239
45815	chr10	+	2659	1	ISM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	32565	23	22532	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	36	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAAACTTCAAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	7589542	7592201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_7589500_7592200
45816	chr17	+	1337	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	-8	-5	-8	5	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	2673	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTGCACACATGAACGTC	NA	False	NA	NA	False	NA	NA	NA	48717033	48724287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
45819	chr12	+	1927	17	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	14	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	432.933669861793	2	77	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGCCGTTGATAGACCTA	8040	False	NA	NA	False	NA	NA	NA	76302200	76366597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337897_76340874_76341022_76341128_76341204_76344255_76344337_76364439_76364475_76366354
45820	chr2	-	1637	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	0	-25	intron_retention	FALSE	canonical	3	75	junction_2	4.41273409829124	60	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATAAATAAAGCGCTTTA	9395	False	NA	NA	False	NA	NA	NA	24825186	24815391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_24815689_24815767_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
45821	chr15	-	1679	13	NIC	ENSMUSG00000033565.19	novel	1694	13	NA	NA	-141	-4	combination_of_known_junctions	FALSE	canonical	3	20	junction_12	50.3412659311976	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAGTGCATTTCCACGT	NA	False	NA	NA	False	NA	NA	NA	77087777	76968005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77087561
45822	chr17	+	1896	1	NIC	ENSMUSG00000041057.11	novel	3450	18	NA	NA	32	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCCAGCGCGTGTCTCGT	NA	False	NA	NA	False	NA	NA	NA	71964122	71966018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_71964100_71966000
45823	chr17	+	1742	4	NIC	ENSMUSG00000024181.10	novel	1068	5	NA	NA	7	-5	intron_retention	FALSE	canonical	0	0	junction_1	660.694752178005	216	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGTCTGGAGTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	26342500	26345582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26343683_26344230_26344366_26344451_26344539_26345244
45824	chr2	+	2648	7	NNC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	-3914	6	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	238.451078141129	234	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGAAAGTCTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	172387598	172400533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_172387708_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
45825	chr7	-	1344	11	ISM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	1704	3200	-59	-4	3prime_fragment	FALSE	canonical	3	340	junction_6	41.987617222224	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGTTGGCATCGGGATGA	NA	False	NA	NA	False	NA	NA	NA	46358400	46338731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287
45826	chr10	+	1965	4	FSM	ENSMUSG00000009291.14	ENSMUST00000162895.8	773	4	289	-1481	289	-19	multi-exon	FALSE	canonical	3	637	junction_2	19.2930615046504	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATGGTTGAATATGAC	9254	False	NA	NA	False	NA	NA	NA	77425516	77434547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77425577_77428679_77428852_77429697_77429745_77432861
45827	chr11	-	1834	3	ISM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	36	7	-13	-7	intron_retention	FALSE	canonical	3	272	junction_1	16	39	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACATTGTGTCTTTGCT	4501	False	NA	NA	False	NA	NA	NA	102047194	102043378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102044421_102045382_102045530_102046549
45828	chr4	+	2011	4	NNC	ENSMUSG00000028936.16	novel	2051	4	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2687.85035959139	4	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTCACTGTGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	152410331	152418525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152410357_152411970_152412043_152414460_152414586_152416736
45829	chr16	-	2330	11	NIC	ENSMUSG00000022948.17	novel	2408	12	NA	NA	15	0	intron_retention	FALSE	canonical	2	8	junction_5	37.6591290393179	4	24	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	NA	False	NA	NA	NA	93400664	93380347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
45830	chr10	+	1321	8	Antisense	novelGene_ENSMUSG00000077167.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	46	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCGTCACCGTGACGCAC	NA	False	NA	NA	False	NA	NA	NA	90952653	90959868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_90952984_90953071_90953186_90953905_90954044_90954544_90954742_90955388_90955567_90957781_90957908_90959421_90959568_90959776
45831	chr4	-	734	4	ISM	ENSMUSG00000035696.16	ENSMUST00000143337.2	1028	5	15454	-87	6392	-11	3prime_fragment	FALSE	canonical	3	58	junction_1	2.49443825784929	1	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACGATCGGTAGGTATT	1438	False	NA	NA	False	NA	NA	NA	44152551	44142305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_44142466_44143447_44143616_44149024_44149239_44152359
45833	chr6	-	2346	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	156	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2076.54694384692	1	143	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8641	False	NA	NA	False	NA	NA	NA	145021754	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953354_144953469_144955771_144955862_144961174_144961318_144964917_144965054_144978500_144978646_144980297_144980378_144985160_144985362_144993017_144993082_145021608
45834	chr10	-	4957	12	FSM	ENSMUSG00000020227.11	ENSMUST00000020448.11	3097	12	119	-1979	-42	1979	multi-exon	FALSE	canonical	2	13	junction_2	3.60440501847255	55	73	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATTAGAATGACTCCCAG	NA	False	NA	NA	False	NA	NA	NA	120037445	119975573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_119979097_119981550_119981716_119981802_119981866_119982335_119982535_120000997_120001117_120002309_120002425_120006222_120006288_120012135_120012288_120013972_120014028_120014600_120014705_120018430_120018614_120037231
45836	chr17	+	1938	5	Intergenic	novelGene_59	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	11.6404467268228	23	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGGTTCTTGGGAATA	NA	False	NA	NA	False	NA	NA	NA	17713679	17734327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17713761_17730736_17730807_17731412_17731489_17732495_17733768_17733888
45837	chr3	+	915	5	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	263	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1993.34685579304	3	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3883	False	NA	NA	False	NA	NA	NA	88487240	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494242_88495187
45838	chr5	-	1956	9	NIC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	-20	-2	intron_retention	FALSE	canonical	3	1073	junction_8	125.284675838668	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATGCTAAGTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	24650256	24646042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
45839	chr3	-	1695	11	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	312.988817691623	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	NA	False	NA	NA	NA	157630622	157599884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157611794_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
45840	chr3	-	1862	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	-10	1718	1	29	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	3	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGAACCTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	108352524	108333898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
45841	chr12	+	1807	1	FSM	ENSMUSG00000021241.8	ENSMUST00000222136.2	416	1	-3	-1388	-2	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	52	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTAAGTTCTTATCGTGT	NA	False	NA	NA	False	NA	NA	NA	84820048	84821855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84820000_84821900
45842	chr7	-	2828	6	Fusion	ENSMUSG00000062116.11_ENSMUSG00000063535.8	novel	2042	5	NA	NA	5986	-13	multi-exon	FALSE	canonical	3	3	junction_5	20.5270553173123	227	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTCTGGAATCTTTAA	3008	False	NA	NA	False	NA	NA	NA	7133737	7117701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370_7122410_7124221_7125093_7133543
45844	chrX	-	965	7	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5853.22229630825	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101229939_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
45845	chr15	-	2030	10	NNC	ENSMUSG00000038736.11	novel	2600	10	NA	NA	242	-81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	132.305296031658	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAACCTGAGATCGAATC	NA	False	NA	NA	False	NA	NA	NA	44290939	44239547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264888_44268744_44268926_44269205_44269389_44284114_44284270_44290809
45846	chr12	+	1503	3	Antisense	novelGene_ENSMUSG00000054302.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTTCGCTTTTGGTCTG	6118	False	NA	NA	False	NA	NA	NA	54735858	54739683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_54737141_54738783_54738880_54739558
45848	chr8	+	1134	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-20	-177	multi-exon	FALSE	non_canonical	0	0	junction_5	531.296677949336	158	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	19834741	20045711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20041980_20045495
45849	chrX	+	1791	2	Genic_Genomic	ENSMUSG00000051582.3	novel	873	1	NA	NA	-101	1368	multi-exon	TRUE	non_canonical	0	0	junction_1	0	42	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTTTGCATTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	99472517	99474859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_99473762_99474312
45850	chr5	+	1371	7	NNC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2835.94579559546	5	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586097_104586134_104587130_104587390_104588101
45851	chr11	+	2071	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	57	783	-17	-783	multi-exon	FALSE	canonical	3	864	junction_12	97.3847042006336	1	103	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCTGTGTTCAGAAG	NA	False	NA	NA	False	NA	NA	NA	3914031	3929221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
45853	chr7	-	1347	9	NIC	ENSMUSG00000001794.14	novel	1192	10	NA	NA	-203	0	intron_retention	FALSE	canonical	3	1106	junction_8	177.342888213765	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	NA	False	NA	NA	NA	29893409	29886414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29892018_29892291_29892326_29893302
45854	chr10	+	3045	18	FSM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	62	1008	62	82	multi-exon	FALSE	canonical	3	273	junction_1	40.1674694938122	1	102	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACCACTTCTAGACACCC	NA	False	NA	NA	False	NA	NA	NA	25235815	25398403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
45855	chrX	-	502	6	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	14	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	810.780611509673	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCACATGCTTGTGTGCGC	NA	False	NA	NA	False	NA	NA	NA	72974384	72965733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72969859_72973802_72973869_72974013_72974124_72974319
45857	chr4	-	2606	19	ISM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	2004	-4	-1891	4	3prime_fragment	FALSE	canonical	3	415	junction_14	30.4854245683263	1	113	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGATTCTGTGTGATTAT	NA	False	NA	NA	False	NA	NA	NA	117037832	117016831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768
45858	chr14	-	2255	6	FSM	ENSMUSG00000002320.16	ENSMUST00000120041.8	2164	6	-91	0	-2	0	multi-exon	FALSE	canonical	3	29	junction_5	125.802384715076	154	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5204	False	NA	NA	False	NA	NA	NA	55880799	55873421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880636
45859	chrX	+	1382	5	NNC	ENSMUSG00000031403.15	novel	610	3	NA	NA	-1800	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1257.58824243073	1	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74147754	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74147807_74147945_74148067_74149259_74149379_74149883_74149892_74152301
45860	chr4	+	1691	10	NNC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	2	455	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	107.74455387113	1591	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCGCATCCCTGCTCTGTT	-29	True	NA	NA	False	NA	NA	NA	44981396	44991189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376_44991087_44991128
45861	chr13	+	2800	3	ISM	ENSMUSG00000021696.10	ENSMUST00000225550.2	2351	8	22	14285	22	-14285	5prime_fragment	FALSE	canonical	3	95	junction_1	6.5	3	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTTGACCAGTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	108350965	108406322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_108351035_108393200_108393333_108403723
45862	chr10	-	1430	12	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	5	-896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	895.062156759412	1	58	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATAATAAAATCAGGAGT	8750	False	NA	NA	False	NA	NA	NA	128401798	128394532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395119_128395227_128395306_128395402_128395950_128396127_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399158_128399445_128399575_128401608
45864	chr17	+	2370	9	NNC	ENSMUSG00000024457.17	novel	3203	10	NA	NA	12	-535	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	106.929883568626	2	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGAGCAGTCCTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	37148087	37169737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163607_37167547_37167664_37167880_37167914_37168291_37168480_37168702
45865	chr1	-	2507	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	-485	8	-485	-1	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	183	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGTACCTGTCAGTGTT	NA	False	NA	NA	False	NA	NA	NA	64656886	64645639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
45866	chr3	+	1687	3	ISM	ENSMUSG00000027680.16	ENSMUST00000200086.5	2158	15	43683	-601	17149	-350	3prime_fragment	FALSE	canonical	3	754	junction_1	13	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	NA	False	NA	NA	False	NA	NA	NA	34117929	34124121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_34118469_34122309_34122402_34123065
45867	chr11	-	2210	7	NNC	ENSMUSG00000020744.14	novel	2307	7	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_5	56.1654302534536	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGACTGCAGACCATT	NA	False	NA	NA	False	NA	NA	NA	115518934	115505003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514794_115515024_115515195_115518890
45869	chr16	-	1870	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	64	11	-3	-11	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	1	96	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGTAAAGTCGCTGTA	1018	False	NA	NA	False	NA	NA	NA	11021131	11010844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
45870	chr7	+	1989	7	NNC	ENSMUSG00000030990.19	novel	902	4	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	61.8079462708657	26	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAGGTAGGTATGTTGC	-1	True	NA	NA	False	NA	NA	NA	101871639	101887771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101871703_101872579_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
45871	chr19	+	1402	4	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	6444	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	623.196776485744	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	3116	False	NA	NA	False	NA	NA	NA	8892065	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8892141_8892288_8892469_8892767_8892873_8892988
45872	chrX	+	1151	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-25	66	multi-exon	FALSE	canonical	0	0	junction_1	0	3	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069474_13069623
45873	chr17	-	2486	15	NIC	ENSMUSG00000005823.10	novel	2064	17	NA	NA	17	30	intron_retention	FALSE	canonical	3	88	junction_10	34.0822085372341	53	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCGGAGCCCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	57554646	57541913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57542367_57542922_57543048_57543155_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
45874	chr6	+	3445	1	Antisense	novelGene_ENSMUSG00000030201.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTTTTGATTATGCAAAA	8945	False	NA	NA	False	NA	NA	NA	134423446	134426891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_134423400_134426900
45875	chr15	-	1795	9	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	385	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.608934471385	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAATCCCGACCCTGCCAG	NA	False	NA	NA	False	NA	NA	NA	83056408	83037706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038707_83043039_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
45876	chr4	-	1697	10	ISM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	1666	1	1555	-1	3prime_fragment	FALSE	canonical	3	205	junction_9	25.540575319564	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGTGTCTGGGAGTCTTC	NA	False	NA	NA	False	NA	NA	NA	130066929	130059395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724
45877	chr1	-	1736	2	ISM	ENSMUSG00000043467.20	ENSMUST00000159250.9	2473	5	4244	375	3655	-211	3prime_fragment	FALSE	canonical	3	7	junction_1	0	1	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAATGACTCATTTATCAA	NA	False	NA	NA	False	NA	NA	NA	160858174	160847203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_160847977_160857211
45878	chr13	+	2909	28	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	16	-209	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	189.931877181851	1	146	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCCTCCTAAAGCGCATT	NA	False	NA	NA	False	NA	NA	NA	18901475	19050772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_18901536_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007957_19008048_19011773_19011904_19013403_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033124_19036476_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
45879	chr16	+	2374	18	NNC	ENSMUSG00000022779.17	novel	2950	19	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	107.208137634633	4	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGAGCCTGGGACCTTTT	NA	False	NA	NA	False	NA	NA	NA	16688632	16710850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709360_16710698
45880	chr11	+	3390	11	NNC	ENSMUSG00000019189.14	novel	614	2	NA	NA	-221	-1	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_1	109.849169318662	124	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGTTGTATTCCTGTGATG	9506	False	NA	NA	False	NA	NA	NA	44409569	44456346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_44409702_44415754_44415971_44422102_44422212_44433455_44433548_44439590_44439827_44442470_44442647_44445964_44446106_44448082_44448266_44450798_44450947_44452291_44452649_44454746
45882	chr10	+	1837	9	NIC	ENSMUSG00000019970.16	novel	2456	12	NA	NA	-6	9	intron_retention	FALSE	canonical	3	717	junction_1	97.3007579621043	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTATCTGTGTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	21870603	21874148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872571_21872877_21873002_21873240_21873953_21874058
45884	chr15	+	1141	4	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	630.303630535845	2	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4533	False	NA	NA	False	NA	NA	NA	80139772	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141175_80141370
45886	chr4	+	741	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	1095	-708	1095	708	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	103421693	103422434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_103421700_103422400
45887	chr17	+	2530	12	FSM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	259	59	259	-59	multi-exon	FALSE	canonical	3	575	junction_1	37.9601792225955	341	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTAATGAAACGTGTG	NA	False	NA	NA	False	NA	NA	NA	36291001	36300295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36291140_36291508_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
45889	chr5	+	2145	11	ISM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	4340	839	-367	254	3prime_fragment	FALSE	canonical	3	664	junction_9	63.5311734505196	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTTTCCTTAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	124721542	124734904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
45890	chr7	-	1455	5	NNC	ENSMUSG00000070436.13	novel	2215	5	NA	NA	-4	-85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	679.675841854041	4	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTTGTACAAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99002314	98994686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995296_98996334_98996365_98996472_98996572_98998009_98998672_99002259
45891	chr14	+	1968	10	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	-40	-271	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	347.457253787968	40	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGTATCACTCCCTGC	NA	False	NA	NA	False	NA	NA	NA	122344509	122396745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378727_122389375_122389488_122392739_122392912_122396060
45892	chr2	-	1155	7	FSM	ENSMUSG00000027566.16	ENSMUST00000129529.9	1157	7	-4	6	-4	-6	multi-exon	FALSE	canonical	1	1	junction_1	1848.62763662369	31	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAACTCTGTGATGAGAA	NA	False	NA	NA	False	NA	NA	NA	179684207	179678172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_179678633_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
45894	chr5	-	2742	10	Antisense	novelGene_ENSMUSG00000036435.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	19	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGAAGTTGACCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	76703375	76677156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_76677309_76680600_76680734_76683398_76683532_76685544_76685702_76689894_76690085_76691300_76691529_76691723_76691856_76693098_76693209_76697370_76697446_76701943
45895	chr6	-	1351	3	NNC	ENSMUSG00000034203.9	novel	3472	3	NA	NA	82	-2108	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_2	491.5	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTTTGAATGGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	91450349	91441261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_91442296_91444664_91444764_91450131
45896	chr16	-	1970	4	NIC	ENSMUSG00000022978.12	novel	1333	5	NA	NA	33	-5	intron_retention	FALSE	canonical	3	279	junction_3	14.0554457615387	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCATTTGTTTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	90524259	90516204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_90517639_90518523_90518647_90523180_90523248_90523913
45897	chr1	+	544	1	Antisense	novelGene_ENSMUSG00000103653.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGGAAGCTGCCCATACAG	NA	False	NA	NA	False	NA	NA	NA	191758044	191758588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_191758000_191758600
45898	chr11	+	3648	19	ISM	ENSMUSG00000004043.15	ENSMUST00000107356.8	3738	20	828	10	0	-9	3prime_fragment	FALSE	canonical	3	9	junction_8	10.9994388184574	70	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAATCTACCAGTCTGCT	NA	False	NA	NA	False	NA	NA	NA	100751309	100775985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_100751403_100752153_100752292_100752546_100752704_100753956_100754047_100756156_100756332_100764828_100764960_100765164_100765317_100765748_100765905_100766308_100766489_100767602_100767691_100767767_100767891_100770104_100770198_100770436_100770644_100771102_100771198_100771293_100771425_100771855_100772012_100772563_100772616_100772887_100772993_100774659
45899	chr18	-	3106	4	Antisense	novelGene_ENSMUSG00000024273.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	727	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTCGGCTTTCTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	24612891	24603913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_24604047_24605999_24606206_24608580_24608778_24610321
45900	chr3	-	541	4	ISM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	543	10	543	-10	3prime_fragment	FALSE	canonical	3	839	junction_3	23.4426012966897	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGAAATTGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	87965259	87963836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227
45901	chr13	-	1753	5	NNC	ENSMUSG00000074863.6	novel	2458	4	NA	NA	6	235	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.6234284141595	1	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTCATCTTTGAACAT	NA	False	NA	NA	False	NA	NA	NA	62832753	62820245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62820940_62820990_62821755_62823062_62823124_62823332_62823460_62832646
45903	chr18	-	1892	8	NIC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	15	-46	intron_retention	FALSE	canonical	3	1190	junction_5	84.227582859095	37	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTTTAAACTTTGTGGC	NA	False	NA	NA	False	NA	NA	NA	77855465	77845314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77849817_77851772_77851909_77854563_77854739_77855419
45904	chr9	+	2383	4	FSM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	0	-857	0	857	multi-exon	FALSE	canonical	3	70	junction_1	5.71547606649408	386	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTGTTGATACCCCTGAA	NA	False	NA	NA	False	NA	NA	NA	108911560	108922414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108911636_108918404_108918716_108919908_108920074_108920582
45905	chr10	-	1972	13	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_12	29.0128084741129	209	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5775	False	NA	NA	False	NA	NA	NA	4382275	4353170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382063
45907	chr9	-	3249	1	ISM	ENSMUSG00000059495.15	ENSMUST00000165665.9	10752	41	138888	8	59562	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	89	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGAGTATGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	42878394	42875145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_42875100_42878400
45909	chrX	-	1606	10	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_5	600.2778986066	13	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	NA	NA	NA	72308987	72298144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303202_72303233_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
45910	chr15	+	2009	12	NNC	ENSMUSG00000022471.15	novel	3296	13	NA	NA	60	79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304.881144705103	1	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGGCTGGGTGTGGATA	NA	False	NA	NA	False	NA	NA	NA	81900775	81921771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81901135_81901274_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915371_81915464_81919877_81919988_81921657
45911	chr11	+	1338	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	-6	0	-6	0	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	1090	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	88095207	88102333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
45912	chr15	+	2022	7	FSM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	13	11	8	-7	multi-exon	FALSE	canonical	3	36	junction_2	6.64371047599825	204	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTCTAAACTATGTCTT	NA	False	NA	NA	False	NA	NA	NA	82012135	82026393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015945_82016031_82018781_82018964_82019270_82019343_82025066
45913	chr10	-	2691	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	95	94	-7	-94	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	9	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTCATCTTCATGTTCCA	NA	False	NA	NA	False	NA	NA	NA	57408531	57391963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
45914	chr15	+	2767	6	NIC	ENSMUSG00000022385.12	novel	2641	12	NA	NA	-18	-7624	intron_retention	FALSE	canonical	3	528	junction_1	60.9931143654757	4	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCAAAGAGGACCAAGGCT	7119	False	NA	NA	False	NA	NA	NA	85743927	85753107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85748464_85751675_85751803_85752880
45915	chr11	-	981	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9391.46421879142	2	21	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113063	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102765_33103960_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111117_33111130_33112953
45916	chr15	-	1471	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	11	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1033.93935186419	3	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	2674	False	NA	NA	False	NA	NA	NA	43146104	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124538_43125990_43126097_43126609_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
45917	chrX	-	1515	3	Antisense	novelGene_ENSMUSG00000001131.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGAATCCTCTTGCCTT	NA	False	NA	NA	False	NA	NA	NA	20739799	20737900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20739094_20739286_20739414_20739604
45918	chr1	+	1700	8	NNC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	30	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	189.015818364064	1	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATCTCAAGGAATCAT	8533	False	NA	NA	False	NA	NA	NA	134334080	134339462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134334205_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336230_134337164_134337425_134338230_134338331_134338644
45919	chr10	+	1350	10	NIC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	69.3265666213622	40	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	59838662	59935808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_59838730_59840616_59840750_59843548_59843649_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
45920	chr13	-	2561	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	236	-5	1	3	multi-exon	FALSE	canonical	0	0	junction_5	18.5718491337539	122	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCTCTGGAATAGTTTT	NA	False	NA	NA	False	NA	NA	NA	12476383	12454292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
45921	chr1	+	1920	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	24	4	24	-4	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	337	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACTTTTTCCCCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	179495798	179514750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
45922	chr6	-	3551	19	NNC	ENSMUSG00000030309.17	novel	3697	19	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_13	20.1913684039664	1	77	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	148797619	148743989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777980_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
45923	chr10	-	2219	12	NIC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_11	84.2623804572988	2	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	367	False	NA	NA	False	NA	NA	NA	41685626	41594841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616910_41619037_41619218_41621766_41621918_41657479_41657547_41685568
45924	chr1	+	2839	14	NNC	ENSMUSG00000026554.16	novel	2859	14	NA	NA	-15	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	185.070880392434	1	128	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGTTAAAATTATTGTC	NA	False	NA	NA	False	NA	NA	NA	171975729	172023038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003053_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
45925	chr2	+	2127	11	NNC	ENSMUSG00000026858.19	novel	2196	11	NA	NA	-1	-74	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	18.1096659273439	9	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAAGACAGCCAGGGCT	NA	False	NA	NA	False	NA	NA	NA	30254264	30269032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30254318_30257563_30257800_30258888_30259104_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185
45926	chr7	+	2029	8	NNC	ENSMUSG00000030867.8	novel	2199	10	NA	NA	-33	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	408.96659211895	1	81	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATATTAAAATGTGTACA	NA	False	NA	NA	False	NA	NA	NA	121758696	121769072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_121759174_121759758_121759928_121763114_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
45927	chr5	-	1719	11	NNC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_9	338.558414457535	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	24650195	24646036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24648990_24649073_24649304_24650063
45928	chr11	-	1270	2	Genic_Genomic	ENSMUSG00000082087.5	novel	951	1	NA	NA	-39	352	multi-exon	FALSE	canonical	0	0	junction_1	0	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTGTGAAAAAAAAAAAAGA	5817	False	NA	NA	False	NA	NA	NA	40564722	40563380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_40564471_40564542
45929	chr4	-	1284	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	-86	6	-86	-6	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	1904	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGAGTTCTTTCTCGTTA	NA	False	NA	NA	False	NA	NA	NA	134642421	134625165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
45930	chr8	-	2724	4	Antisense	novelGene_ENSMUSG00000031533.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCGAGGGCGTAGAAATGC	NA	False	NA	NA	False	NA	NA	NA	22913521	22901519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_22901599_22904729_22905018_22909740_22909898_22911321
45931	chr4	+	2352	3	Intergenic	novelGene_2024	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTACTTTTGGGATTGA	NA	False	NA	NA	False	NA	NA	NA	145483824	145488664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_145483881_145483921_145486088_145488534
45933	chr3	-	2502	6	NIC	ENSMUSG00000038975.15	novel	1271	9	NA	NA	0	-2	intron_retention	FALSE	canonical	3	638	junction_2	165.135580660256	5	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGGCTGTTGTGTATAT	7076	False	NA	NA	False	NA	NA	NA	153617670	153612931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
45934	chr2	+	3668	23	ISM	ENSMUSG00000005102.14	ENSMUST00000005233.12	5212	39	8	23470	8	-526	5prime_fragment	FALSE	canonical	3	67	junction_22	11.6185943873254	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCCAAATGTCGCTGTC	NA	False	NA	NA	False	NA	NA	NA	118219106	118282245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363_118241445_118243415_118243565_118247707_118247824_118251198_118251354_118252443_118252980_118257045_118257153_118258308_118258467_118261276_118261705_118262691_118262762_118265103_118265188_118266643_118266767_118269446_118269552_118271642_118271701_118272495_118272576_118273605_118273708_118276740_118276795_118278756_118278994_118280790_118280867_118281892
45935	chr3	-	1375	9	Antisense	novelGene_ENSMUSG00000027804.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATGCGTGGGACATCTTC	5390	False	NA	NA	False	NA	NA	NA	79510947	79498795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_79498863_79500914_79501025_79505036_79505179_79506096_79506220_79506356_79506481_79507620_79507680_79509568_79509665_79509748_79509791_79510335
45936	chr8	+	2085	17	NNC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	195.391873871459	1	71	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	NA	False	NA	NA	NA	85415917	85426415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85416006_85416260_85416538_85417145_85417202_85417428_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424891_85425037_85425099_85425767_85425888_85425969_85426100_85426231
45937	chr9	+	2098	12	ISM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	13	3623	13	-3622	5prime_fragment	FALSE	canonical	3	55	junction_5	93.4016475689537	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTGTGACTCATTTTG	6199	False	NA	NA	False	NA	NA	NA	65201589	65234317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063
45938	chr8	+	4601	29	FSM	ENSMUSG00000071176.11	ENSMUST00000084207.12	5528	29	74	853	-1	-842	multi-exon	TRUE	canonical	3	14	junction_9	8.00541908296359	18	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTATTTATATTCTCTAT	NA	False	NA	NA	False	NA	NA	NA	14961736	15050232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_14961764_14975049_14975221_14978771_14978937_14979963_14980246_14982356_14982421_14984769_14984847_14986740_14986798_14990208_14990373_14992609_14992727_14995279_14995395_14997156_14997264_15004434_15004513_15004748_15004929_15006862_15006980_15008563_15008657_15011114_15011286_15012517_15012664_15014086_15014263_15024975_15025092_15025569_15025698_15025887_15025989_15027547_15027670_15028436_15028524_15029799_15030027_15030551_15030710_15033769_15033913_15041059_15041235_15047541_15047665_15049318
45939	chr13	-	4509	15	NNC	ENSMUSG00000021147.18	novel	4526	14	NA	NA	105	0	intron_retention	TRUE	non_canonical	0	0	junction_1	24.1594406273939	1	165	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATTATAAAGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	8920910	8853030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_8854379_8854458_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920672
45942	chr1	-	1583	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	22	-27	0	27	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	715	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTCACACATGTGTA	NA	False	NA	NA	False	NA	NA	NA	185849485	185819900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
45943	chr5	+	1632	8	NIC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	0	-4	intron_retention	FALSE	canonical	3	1600	junction_4	149.531103856048	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	8075	False	NA	NA	False	NA	NA	NA	145051067	145064879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062777_145063536_145063743_145064445
45944	chr18	+	2430	11	FSM	ENSMUSG00000024590.9	ENSMUST00000025486.9	2843	11	413	0	413	0	multi-exon	FALSE	canonical	3	1085	junction_1	118.73230394463	595	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTGTTCTTTTTAACCC	NA	False	NA	NA	False	NA	NA	NA	56841297	56886496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_56841547_56861472_56861630_56862358_56862485_56864041_56864213_56866283_56866410_56872892_56873114_56873758_56873985_56876282_56876388_56881048_56881169_56882770_56882882_56885678
45945	chr11	-	1248	6	ISM	ENSMUSG00000042988.11	ENSMUST00000055439.4	1433	7	532	-57	532	0	3prime_fragment	FALSE	canonical	3	110	junction_3	7.35934779718964	45	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	2882	False	NA	NA	False	NA	NA	NA	120548338	120544613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120547385_120547578_120548318
45948	chr1	+	1619	6	NIC	ENSMUSG00000053332.14	novel	1066	9	NA	NA	0	-13	intron_retention	FALSE	canonical	3	3576	junction_1	715.394324830719	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTGTATTATAACATGAA	NA	False	NA	NA	False	NA	NA	NA	160862735	160866089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863815_160864118_160864150_160864389_160865118_160865564_160865608_160865794
45950	chr17	+	970	6	ISM	ENSMUSG00000024392.18	ENSMUST00000174281.9	3611	24	7663	960	1416	-960	internal_fragment	FALSE	canonical	3	624	junction_1	76.2275540733139	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAACCTCCACTGCTTGG	3389	False	NA	NA	False	NA	NA	NA	35362368	35364365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304
45951	chr17	+	902	8	NNC	ENSMUSG00000024392.18	novel	3787	24	NA	NA	948	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	278.062025087782	1	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATAAAAGTCGGATTTT	2921	False	NA	NA	False	NA	NA	NA	35361900	35366257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35361977_35364350_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
45952	chr19	-	2142	8	NNC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	9	0	intron_retention	FALSE	canonical	2	8	junction_5	91.1081438596519	6	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	3	True	NA	NA	False	NA	NA	NA	6117848	6112851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116267_6116445_6116528_6117053_6117152
45954	chr9	+	1429	6	ISM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	14234	8	-984	-8	3prime_fragment	FALSE	canonical	3	15738	junction_4	737.014680993533	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTGTTGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	59577884	59586650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
45955	chr17	+	2766	4	NNC	ENSMUSG00000049672.16	novel	3625	3	NA	NA	63	-209	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	83.8424448328861	15	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTTGTTCTTGATCAT	NA	False	NA	NA	False	NA	NA	NA	69690376	69697536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_69690416_69692415_69692500_69694306_69696104_69696690
45956	chr6	+	2794	1	FSM	ENSMUSG00000030019.7	ENSMUST00000032094.7	2963	1	422	-253	422	253	mono-exon	FALSE	NA	NA	NA	NA	NA	241	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGAAACTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	119457050	119459844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_119457000_119459800
45958	chr4	+	1480	3	NIC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	4816	-45	intron_retention	FALSE	canonical	3	340	junction_2	23	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACACAGTGTCTGGGCC	4834	False	NA	NA	False	NA	NA	NA	44986315	44990689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_44987352_44988919_44989051_44990376
45959	chr3	-	2236	2	ISM	ENSMUSG00000052544.10	ENSMUST00000199707.2	416	3	19055	-1899	19055	1899	3prime_fragment	FALSE	canonical	3	111	junction_1	0	1	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	152912365	152909103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_152911229_152912254
45960	chr17	+	3454	20	ISM	ENSMUSG00000033826.11	ENSMUST00000235507.2	13457	83	18	131705	1	57	5prime_fragment	FALSE	canonical	3	31	junction_2	9.07494190819529	48	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGATTTGGGTCCTTTCC	218	False	NA	NA	False	NA	NA	NA	30845927	30903582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104
45961	chr17	+	1293	6	NNC	ENSMUSG00000046711.17	novel	1717	6	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2094.81898024626	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775623	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781411_27781523_27781798
45962	chr14	-	2178	16	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	68	-271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	265.953345950417	1	114	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAACTAGAGGA	4927	False	NA	NA	False	NA	NA	NA	54754750	54744914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745408_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752194_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
45963	chr8	-	1214	7	NNC	ENSMUSG00000008892.13	novel	1354	9	NA	NA	-1482	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	798.636702971591	2	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAATTGTTCATCTGACTT	NA	False	NA	NA	False	NA	NA	NA	23077619	23067106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_23067619_23068058_23068117_23068999_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568
45965	chr16	-	1773	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-14	-113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	907.175424049836	1	96	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACTAGGGGTTTGAGACA	1007	False	NA	NA	False	NA	NA	NA	11021142	11010946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021020
45966	chr19	+	1236	7	NIC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	444	junction_1	214.46477307215	125	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	8700850	8703807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702888_8703145_8703467_8703602
45969	chr9	-	3369	18	Antisense	novelGene_ENSMUSG00000032193.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCACGCCCAGAGTCATT	NA	False	NA	NA	False	NA	NA	NA	21660111	21634934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21635139_21643040_21643166_21643607_21643731_21644786_21645170_21646531_21646654_21648513_21648636_21649165_21649288_21650148_21650276_21650680_21650848_21650939_21651169_21653481_21653598_21653948_21654086_21655209_21655358_21655523_21655679_21657024_21657200_21657655_21657734_21658442_21658602_21659434
45970	chr11	-	2344	8	FSM	ENSMUSG00000045667.15	ENSMUST00000050226.7	2624	8	245	35	243	-35	multi-exon	FALSE	canonical	3	500	junction_3	27.0237990350305	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAATATATTATGATAAAAA	NA	False	NA	NA	False	NA	NA	NA	72302294	72280974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72302069
45973	chr2	-	1033	3	NNC	ENSMUSG00000062997.7	novel	296	2	NA	NA	-29	-1038	at_least_one_novel_splicesite	FALSE	canonical	3	229	junction_1	19972	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCTCTGCAGGCAGAAGG	NA	False	NA	NA	False	NA	NA	NA	38895084	38892668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_38893279_38894118_38894201_38894743
45976	chrX	-	3839	25	FSM	ENSMUSG00000031214.14	ENSMUST00000033560.9	7170	25	-36	3367	4	607	multi-exon	TRUE	canonical	1	4	junction_23	4.90959944055181	48	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATTTCTGTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97934627	97601249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_97602012_97603191_97603234_97607235_97607287_97608321_97608488_97621989_97622314_97640633_97640782_97670519_97670680_97684513_97684620_97685356_97685416_97688515_97688601_97739604_97739680_97741892_97741956_97742461_97742496_97745470_97745550_97748635_97748728_97753683_97753785_97755946_97756077_97757712_97757818_97769610_97769722_97775970_97776073_97807310_97807383_97824561_97824624_97846690_97846787_97933687_97933861_97933986
45977	chr4	-	3825	10	NNC	ENSMUSG00000029060.18	novel	3642	19	NA	NA	10	262	intron_retention	FALSE	non_canonical	0	0	junction_2	94.208725448428	3	155	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTACACCATGCATCCCT	7435	False	NA	NA	False	NA	NA	NA	155753640	155741137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155741264_155741369_155741772_155741840_155742218_155742311_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
45978	chr3	-	3431	2	ISM	ENSMUSG00000068923.15	ENSMUST00000107503.8	3575	3	3151	2	3151	-1	3prime_fragment	FALSE	canonical	1	2	junction_1	0	44	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGTGCTACAGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	88656207	88652008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88655318_88656085
45979	chr4	-	2362	9	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	375	-8	intron_retention	FALSE	canonical	3	32	junction_6	9.6557948921878	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCACTTGTTCAGTGTC	9078	False	NA	NA	False	NA	NA	NA	152111719	152104240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844
45980	chr1	+	1880	12	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-41	0	intron_retention	FALSE	canonical	3	82	junction_1	60.0854763050932	365	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	NA	False	NA	NA	NA	75412689	75419817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418676_75418828_75418922_75419087_75419257_75419544
45981	chr9	-	3730	1	ISM	ENSMUSG00000025786.18	ENSMUST00000140497.8	5380	7	42616	642	29818	-642	mono-exon	FALSE	NA	NA	NA	NA	NA	43	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGGGTCCAGCTTTCA	3536	False	NA	NA	False	NA	NA	NA	122899596	122895866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_122895900_122899600
45982	chr9	+	4345	11	NIC	ENSMUSG00000032598.9	novel	3360	13	NA	NA	-19	-469	intron_retention	FALSE	canonical	3	72	junction_5	8.03803458564343	3	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATAGGCCAAAAGCC	3184	False	NA	NA	False	NA	NA	NA	108685600	108695574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
45983	chr3	+	2302	19	NIC	ENSMUSG00000025437.16	novel	4183	24	NA	NA	0	-1274	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	128.68911721233	1	36	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTATAGCAGGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	152052151	152088617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547
45984	chr12	-	3858	3	NNC	ENSMUSG00000034460.10	novel	6817	3	NA	NA	0	-1149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.5	2	80	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAAGGGCCCAGCCTCGG	NA	False	NA	NA	False	NA	NA	NA	73160230	73147531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_73150616_73159250_73159932_73160137
45985	chr2	+	2261	8	NNC	ENSMUSG00000079484.13	novel	1390	11	NA	NA	3	-97	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	28.2611726145788	233	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCACAACCATCTGTAATG	NA	False	NA	NA	False	NA	NA	NA	30156833	30169441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30168156_30168223
45987	chr17	+	2866	9	NNC	ENSMUSG00000034729.17	novel	1017	7	NA	NA	0	-33	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_8	744.417725474078	80	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCAAGTAAAGGCACTGG	7137	False	NA	NA	False	NA	NA	NA	47679811	47692309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126_47689322_47690002_47691991_47692168
45989	chr14	+	4347	24	Antisense	novelGene_ENSMUSG00000025558.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	70	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTGTTAAGGAGTAGTCA	NA	False	NA	NA	False	NA	NA	NA	121779609	121844661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_121781038_121783377_121783521_121783971_121784072_121787608_121787803_121792534_121792737_121796396_121796548_121798003_121798116_121799466_121799589_121813323_121813431_121814757_121814837_121815566_121815627_121817899_121818110_121818742_121818860_121820766_121820953_121821073_121821212_121823638_121823750_121829217_121829363_121831749_121831795_121832952_121833021_121835053_121835169_121837099_121837234_121842583_121842702_121844222_121844337_121844513
45990	chr13	-	1820	11	NNC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	43	-2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	77.7830958499339	154	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGCCTTAAGAATTCATG	NA	False	NA	NA	False	NA	NA	NA	35178062	35161734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35173402_35173682_35174163_35174353_35174700_35174800_35177050_35177214_35177812
45993	chr16	-	2416	5	NIC	ENSMUSG00000033809.16	novel	1275	8	NA	NA	3	-532	intron_retention	FALSE	canonical	3	32	junction_4	112.885727618685	7	75	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTGCCCTCCATTTCTAC	NA	False	NA	NA	False	NA	NA	NA	20429502	20424800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429329
45994	chr16	-	489	1	NIC	ENSMUSG00000033809.16	novel	1309	8	NA	NA	4766	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCACCTTTGTGCAGCATA	1678	False	NA	NA	False	NA	NA	NA	20424715	20424226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20424200_20424700
45995	chr10	+	1141	4	NIC	ENSMUSG00000003072.16	novel	931	4	NA	NA	-940	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1142.26247226964	57	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	2647	False	NA	NA	False	NA	NA	NA	79976350	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79976381_79977874_79978441_79979665_79979820_79981256
45996	chr2	-	2474	14	NNC	ENSMUSG00000027086.17	novel	2865	14	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	77.5812610815648	21	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTATGGCCCACCATATA	7090	False	NA	NA	False	NA	NA	NA	69543825	69517158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69543736
45997	chrX	-	1174	11	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	58	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	545.480054630781	3	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72830445	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72825295_72825396_72825619_72825710_72826280_72826323_72830380
45998	chr4	-	1612	1	NIC	ENSMUSG00000041459.16	novel	6495	7	NA	NA	-109	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTTTGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	148702933	148701321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148701300_148702900
45999	chr6	+	838	3	NNC	ENSMUSG00000046323.9	novel	833	4	NA	NA	16	-995	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1225	7	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTTGTTTTTCTTTTA	696	False	NA	NA	False	NA	NA	NA	122603384	122606236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122603570_122605535_122605820_122605867
46000	chr16	+	852	5	Antisense	novelGene_ENSMUSG00000080364.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGGAAGTATCATGGT	4751	False	NA	NA	False	NA	NA	NA	18057663	18065256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_18058057_18058756_18058826_18059609_18059738_18063064_18063225_18065154
46001	chr19	+	1990	7	FSM	ENSMUSG00000042729.12	ENSMUST00000210592.3	846	7	-16	-1128	2	-2	multi-exon	FALSE	canonical	3	1028	junction_4	42.4918292799399	4	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCTGGACCTTTTGTGAT	965	False	NA	NA	False	NA	NA	NA	8713192	8717986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8713270_8713350_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810
46004	chrX	-	1444	5	Antisense	novelGene_ENSMUSG00000031197.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAATATGAAAAATCATAC	NA	False	NA	NA	False	NA	NA	NA	74578538	74560693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_74560804_74564966_74565046_74566873_74566964_74574689_74574830_74577513
46005	chr15	+	2058	5	NIC	ENSMUSG00000022338.9	novel	767	6	NA	NA	34	-4	intron_retention	FALSE	canonical	3	35	junction_2	404.448003456563	52	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGGGACTCTGTTTATT	9705	False	NA	NA	False	NA	NA	NA	44291576	44299286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_44291639_44292955_44293033_44294086_44294191_44295833_44297370_44299007
46006	chr3	-	4392	2	FSM	ENSMUSG00000090919.7	ENSMUST00000166505.7	5218	2	4	822	4	-822	multi-exon	FALSE	canonical	2	3	junction_1	0	27	43	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACAGAAATGCCTTCAGC	NA	False	NA	NA	False	NA	NA	NA	46402372	46397453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_46401725_46402251
46007	chr8	+	2599	22	FSM	ENSMUSG00000052566.9	ENSMUST00000064495.8	2580	22	-19	0	-5	0	multi-exon	FALSE	canonical	3	335	junction_11	39.7071479254288	149	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	NA	False	NA	NA	NA	85717226	85729978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
46008	chr13	-	1706	12	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	23	-97	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.85377331604	1	76	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGATTGAATCTTTCT	NA	False	NA	NA	False	NA	NA	NA	97334780	97312935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313087_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322174_97325469_97325656_97330593_97330776_97334533
46009	chr18	-	3165	9	NNC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-323	-42	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	87.7296094542772	1	113	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCAACTGTTAATATTC	NA	False	NA	NA	False	NA	NA	NA	70605903	70585325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600543_70601124_70601589_70602573_70602849_70604743_70605051_70605361
46011	chr11	+	1769	16	NIC	ENSMUSG00000025142.19	novel	920	7	NA	NA	37	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	315.444631521216	1	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGCTGAGTTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	120564266	120600268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599937_120600073_120600169
46012	chr7	+	1257	3	NIC	ENSMUSG00000046364.15	novel	760	4	NA	NA	0	6	intron_retention	FALSE	canonical	3	7451	junction_1	2757	39	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCATCCTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	109118402	109120979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_109118430_109118791_109119850_109120807
46014	chr8	-	2186	10	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	50	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	115.229347256399	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTCCAATGACATTTCA	NA	False	NA	NA	False	NA	NA	NA	22675785	22658474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667215_22667265_22667596_22667682_22667756_22669529_22669605_22675699
46015	chr5	-	1690	10	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	4	473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	572.867920485157	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCTGGGCTGTCTACCTG	NA	False	NA	NA	False	NA	NA	NA	117527083	117517208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117521413_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
46016	chr4	+	2445	4	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078497.10	novel	2813	7	NA	NA	13	62783	multi-exon	FALSE	non_canonical	0	0	junction_1	44.783429475148	14	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGCAAGAAATTTCTTAT	NA	False	NA	NA	False	NA	NA	NA	147216507	147538244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216648_147217303_147217441_147447267_147447362_147536170
46018	chr10	-	2712	14	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	0	-4	intron_retention	FALSE	canonical	3	15	junction_13	58.4279255596765	134	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCGGGGTGTCTCATGGA	NA	False	NA	NA	False	NA	NA	NA	79390911	79376083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390744
46021	chr6	+	3892	28	NNC	ENSMUSG00000024104.12	novel	4307	31	NA	NA	18	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	130.988077866689	1	244	18	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACGCTTCACAGAGGT	NA	False	NA	NA	False	NA	NA	NA	116185184	116239615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116185289_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201941_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215087_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116235602_116236218_116237451_116237630_116239293
46022	chrX	-	2070	10	Antisense	novelGene_ENSMUSG00000019087.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	91	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGGCCTCTGAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	73348296	73340764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73340927_73341222_73341344_73343858_73343925_73344177_73344376_73344927_73344970_73345540_73345637_73345978_73346207_73346835_73346872_73346959_73347165_73347380
46023	chr4	+	1237	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	63	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	804.775417257648	194	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTGTTGTGGAGTTTTT	2932	False	NA	NA	False	NA	NA	NA	128887079	128905321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128901998_128904810
46024	chr11	+	3710	16	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	-7	-40	intron_retention	FALSE	non_canonical	0	0	junction_15	20.5940660277556	1	125	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTATTTACCTTATTAA	NA	False	NA	NA	False	NA	NA	NA	119246406	119271835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119246466_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271008
46025	chr4	+	2912	4	NNC	ENSMUSG00000070890.4	novel	1452	3	NA	NA	-1930	1375	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_3	2.94392028877595	43	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTCTTTGTTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	101795673	101801755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_101795732_101797576_101797891_101798317_101798903_101799800
46026	chr7	+	1841	14	NIC	ENSMUSG00000002963.18	novel	2184	16	NA	NA	2	-1	intron_retention	FALSE	canonical	0	0	junction_6	66.1201166248609	1	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCACTCTGTGCACAGCCA	9520	False	NA	NA	False	NA	NA	NA	44506767	44512064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44506979_44507586_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
46028	chr2	-	2531	12	NIC	ENSMUSG00000006471.19	novel	2336	14	NA	NA	4	-1	intron_retention	FALSE	canonical	3	158	junction_2	17.43796561036	144	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTAGCCGCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	25145376	25137241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25137867_25137971_25138067_25138133_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
46029	chr18	-	3779	17	ISM	ENSMUSG00000024622.9	ENSMUST00000091884.6	5103	21	11488	21	2067	-5	3prime_fragment	FALSE	canonical	3	70	junction_14	24.1916178665256	94	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATCTGGTTTTGATGA	NA	False	NA	NA	False	NA	NA	NA	61298634	61264369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_61265668_61266923_61267134_61268542_61268660_61269298_61269433_61270474_61270695_61273862_61274048_61274730_61274863_61279500_61279629_61280318_61280621_61283440_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290591_61290686_61290834_61295968_61296101_61298556
46030	chr9	+	1665	3	ISM	ENSMUSG00000009927.10	ENSMUST00000216867.2	577	4	-1	-3	1	0	intron_retention	FALSE	canonical	3	11233	junction_1	415.5	26	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGGGTGCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	44318992	44321489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_44319055_44319284_44319381_44319982
46032	chr8	-	1610	3	ISM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	32237	2468	4118	-2468	3prime_fragment	FALSE	canonical	3	250	junction_2	13	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGGACTTTGCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	23666125	23663748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_23664677_23665355_23665436_23665523
46035	chr7	+	1796	15	FSM	ENSMUSG00000015149.15	ENSMUST00000122915.8	1828	15	28	4	-4	-4	multi-exon	FALSE	canonical	3	61	junction_1	14.0365775815931	405	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACCATGACTTGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	28466187	28488081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
46036	chr7	+	3490	6	ISM	ENSMUSG00000015165.17	ENSMUST00000174477.8	2180	12	5376	-7	1207	-2	3prime_fragment	FALSE	canonical	3	4757	junction_1	533.031931501294	22	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTATTTGCTGGGGCTCCA	NA	False	NA	NA	False	NA	NA	NA	28515737	28521672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
46037	chr14	+	1609	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4479	0	intron_retention	TRUE	canonical	3	21	junction_4	63.2262252198845	141	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	41761472	41825778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41761595_41761988_41762060_41766111_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
46038	chr17	-	2617	14	NIC	ENSMUSG00000024137.10	novel	2574	14	NA	NA	35	-3	combination_of_known_junctions	FALSE	canonical	3	73	junction_6	16.2546306556464	136	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCAGTTTGTTGTGATT	NA	False	NA	NA	False	NA	NA	NA	24674331	24662758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
46039	chr16	+	2744	6	NNC	ENSMUSG00000022961.19	novel	7529	7	NA	NA	-31	-13	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	201.190854662929	2	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTAACTTGTTG	NA	False	NA	NA	False	NA	NA	NA	91444735	91462583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91444873_91448517_91448685_91451498_91452827_91461085_91461233_91461521_91461711_91461807
46040	chr9	-	2684	9	NNC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	5	-137	intron_retention	FALSE	canonical	0	0	junction_4	83.492140348658	2	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAGCCATGCCCAAAGAA	9253	False	NA	NA	False	NA	NA	NA	26910840	26886808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_26887057_26888851_26889760_26890280_26890379_26890471_26890590_26896740_26896897_26901415_26901493_26901878_26902706_26903455_26903557_26910689
46042	chr13	+	1801	11	NNC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	8	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	171.17990536275	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGAGGCTGACTTAGGT	NA	False	NA	NA	False	NA	NA	NA	54769604	54809402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799894_54800034_54803218_54803391_54804094_54804239_54808766
46043	chr14	-	1605	11	NNC	ENSMUSG00000022177.10	novel	1587	10	NA	NA	58	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	182.4209691894	26	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCTTAGAGTTTTAGTCA	NA	False	NA	NA	False	NA	NA	NA	54791760	54779249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786137_54786222_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
46044	chr4	+	2474	8	NIC	ENSMUSG00000028550.16	novel	2792	11	NA	NA	28	-14	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	24.0577536400239	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACATGAAAACATAAGA	NA	False	NA	NA	False	NA	NA	NA	99082411	99148006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99146633
46046	chr6	-	1145	10	NIC	ENSMUSG00000000399.11	novel	1445	11	NA	NA	0	42	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	399.05669636479	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAAGTGTCTTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	126826088	126798916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_126799153_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
46047	chr11	-	1338	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	10	-5	10	-1	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	8	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCAGTTGTTTATTTGT	9951	False	NA	NA	False	NA	NA	NA	69812202	69807540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
46048	chr9	+	718	5	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	3638	146	-122	-146	3prime_fragment	FALSE	canonical	3	17449	junction_1	1251.29452967717	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTGTGACTCTTAAATT	NA	False	NA	NA	False	NA	NA	NA	64084294	64085802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
46050	chr12	-	2128	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	7	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.2181880477452	2	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCAGATTCTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	4283931	4263479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4264581_4265252_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
46051	chr5	+	1211	8	NIC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1785.87927237823	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAGGTCTCTGTAGATTT	609	False	NA	NA	False	NA	NA	NA	135807489	135819240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135807656_135812158_135812328_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
46052	chr10	+	2317	13	NNC	ENSMUSG00000020156.17	novel	2640	14	NA	NA	1571	-4	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	149.606613787255	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCATATGTGTCATAGT	NA	False	NA	NA	False	NA	NA	NA	80064155	80079728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80064230_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
46053	chr4	-	3499	2	NIC	ENSMUSG00000043085.15	novel	1671	6	NA	NA	64	0	intron_retention	FALSE	canonical	3	109	junction_1	0	13	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	NA	False	NA	NA	NA	141345228	141341543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141345024_141345209
46054	chr9	-	1973	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	13	-15	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	76.1655269790737	493	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTCCAATCTAGTCAT	NA	False	NA	NA	False	NA	NA	NA	27066676	27008694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011319_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
46055	chr15	-	1741	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_9	124.308258816044	50	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	NA	False	NA	NA	NA	76501048	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76500772
46056	chr7	-	3553	10	NNC	ENSMUSG00000109799.2	novel	2141	4	NA	NA	-1886	22003	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACACATTCTATTGAATTC	NA	False	NA	NA	False	NA	NA	NA	109882620	109854985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_109855114_109863084_109863312_109865038_109865188_109866986_109867097_109869105_109869287_109872464_109872572_109873838_109874007_109878384_109878590_109879775_109879869_109880435
46058	chr8	+	1975	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	81	122	81	-122	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	14	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGTTTCCATCAGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	107757934	107772265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
46059	chr6	+	2167	6	NIC	ENSMUSG00000030271.15	novel	1601	7	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	238	junction_4	8.77724330299668	12	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACGCAGTGAAGAGTG	2300	False	NA	NA	False	NA	NA	NA	113303924	113311143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113304324_113305325_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
46060	chr10	+	1617	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	4976.51906456712	2	70	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	127919173	127926142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127919323_127919760_127919882_127920251_127920337_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924186_127924403_127924825_127925028_127925887
46061	chr17	+	2553	24	NNC	ENSMUSG00000035842.11	novel	4141	27	NA	NA	-11	1114	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	38.0451428207272	1	71	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTACTTGAATCAGACACT	NA	False	NA	NA	False	NA	NA	NA	66430596	66457026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456179_66456309_66456962
46063	chr3	-	3030	2	Antisense	novelGene_ENSMUSG00000015522.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGATGGCGGACGCCCAC	NA	False	NA	NA	False	NA	NA	NA	95358561	95341721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95341871_95355680
46064	chrX	+	1128	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	-2	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5758.35290879451	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCAGTTTTGTTCG	NA	False	NA	NA	False	NA	NA	NA	36059301	36062450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060983_36061388_36061530_36062143
46065	chr15	+	1427	4	NNC	ENSMUSG00000022427.5	novel	1569	4	NA	NA	6	187	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	458.553038250636	31	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTATTGCTGTGTTTGTG	8184	False	NA	NA	False	NA	NA	NA	79555067	79557068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79555210_79555373_79555640_79555847_79556216_79556417
46067	chrX	+	1518	9	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	2753	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2047.02740272328	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105237986	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243386_105243790_105243964_105246065_105246223_105246442_105246542_105246844
46068	chr14	+	1328	3	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACACGTGTTTCTATATG	6575	False	NA	NA	False	NA	NA	NA	76741953	76745201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742338_76743856_76744205_76744605
46069	chr7	+	1528	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	4	0	4	0	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	1001	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	NA	False	NA	NA	NA	121732267	121748267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
46070	chr11	+	1929	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-9	-791	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	396.247790182469	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCAATTGGATTCTGTG	NA	False	NA	NA	False	NA	NA	NA	3913999	3929213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919534_3920649_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927133_3927645_3927784_3927870_3928033_3928826
46071	chrX	-	1008	1	Antisense	novelGene_ENSMUSG00000031432.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTCTCCAGACTGCAGA	NA	False	NA	NA	False	NA	NA	NA	139369613	139368605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_139368600_139369600
46073	chr17	+	2142	6	NNC	ENSMUSG00000017831.9	novel	2366	6	NA	NA	-9	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	453.560580297715	465	19	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAACACTGAGTTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	53786252	53814703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_53786440_53790827_53791052_53804554_53804707_53805415_53805539_53807403_53807498_53813341
46075	chr11	+	1296	11	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAAGGACGCGGGCTCTCC	NA	False	NA	NA	False	NA	NA	NA	33102514	33113074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102874_33103981_33104056_33105999_33106107_33106664_33106748_33106990_33107049_33109933_33109993_33110333_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
46076	chr13	-	2294	5	ISM	ENSMUSG00000021577.15	ENSMUST00000221594.2	722	6	-25	14326	9	90	5prime_fragment	FALSE	canonical	3	1612	junction_1	108.845073384145	39	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGCTTTTATTGTATTT	NA	False	NA	NA	False	NA	NA	NA	74498345	74485510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
46077	chr11	-	1897	5	NIC	ENSMUSG00000018761.15	novel	971	7	NA	NA	0	-25	intron_retention	FALSE	canonical	3	628	junction_2	19.0328663106743	57	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACATGGTTTTAATTGTA	6816	False	NA	NA	False	NA	NA	NA	69553413	69547547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69549703_69553294
46080	chr3	-	1771	3	NIC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	55	-1	intron_retention	FALSE	canonical	3	599	junction_2	57.5	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAAATTTATTTTATTA	NA	False	NA	NA	False	NA	NA	NA	90398245	90395677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_90396901_90397460_90397902_90398138
46082	chr6	-	2211	7	NNC	ENSMUSG00000079477.10	novel	1657	8	NA	NA	10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	891.60691388576	1	112	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGCTGCTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	88022242	87976092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87977513_87981167_87981261_87981958_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
46085	chr13	-	1567	7	NNC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	71.8091606660011	808	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	NA	NA	NA	91955804	91944651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_91945374_91946941_91947011_91947438_91947485_91948729_91948823_91948984_91949136_91953869_91954280_91955728
46086	chr15	+	1667	6	FSM	ENSMUSG00000022257.5	ENSMUST00000226437.2	1662	6	2	-7	2	0	multi-exon	FALSE	canonical	1	2	junction_1	166.723003811712	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	113	False	NA	NA	False	NA	NA	NA	34238296	34284448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_34238569_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
46088	chr14	-	1912	7	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	183	1002	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.86338998124982	1	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCTCTCATTAAATCAAAG	NA	False	NA	NA	False	NA	NA	NA	17614014	17592919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_17594008_17596548_17596732_17597407_17597540_17598489_17598653_17609286_17609438_17612629_17612744_17613933
46090	chr14	-	1802	8	NNC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	-8	2	intron_retention	FALSE	canonical	0	0	junction_2	56.570346309994	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGAAGTGAAATTATGG	NA	False	NA	NA	False	NA	NA	NA	52542572	52532311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52532551_52533530_52533644_52534909_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
46091	chr3	+	2300	15	NNC	ENSMUSG00000028256.17	novel	2239	15	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_3	24.2331363624105	8	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	NA	NA	NA	144824323	144859650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_144824548_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
46092	chr4	-	3111	1	ISM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	187698	6	187407	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	42	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACAACCTTTTTGGTTC	3236	False	NA	NA	False	NA	NA	NA	25612448	25609337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_25609300_25612400
46094	chr9	-	3761	2	NNC	ENSMUSG00000032423.13	novel	3176	9	NA	NA	27097	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	128	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTAGGATCTCCAGGAG	NA	False	NA	NA	False	NA	NA	NA	88335700	88331793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88335480_88335625
46095	chr10	-	505	4	ISM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	6	5340	6	44	5prime_fragment	FALSE	canonical	3	1853	junction_3	153.588917424258	4	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCCAATGTGGCTCACAC	-8	True	NA	NA	False	NA	NA	NA	128401850	128398976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128399005_128399092_128399199_128399445_128399575_128401608
46097	chrX	+	1109	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-29	67	multi-exon	FALSE	canonical	0	0	junction_1	0	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068780	13070086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069176_13069372
46098	chr2	-	2620	3	ISM	ENSMUSG00000050619.15	ENSMUST00000163766.8	3611	6	-17	4941	-17	-496	5prime_fragment	FALSE	canonical	3	33	junction_1	2	116	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCATTATCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	121001623	120996117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_120997200_120999679_120999885_121000290
46100	chr1	-	1285	6	NNC	ENSMUSG00000026021.16	novel	1215	5	NA	NA	-18	-3	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_4	1439.42688595149	613	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGAAGCTCCTTTTATT	613	False	NA	NA	False	NA	NA	NA	59709969	59678595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_59679428_59681576_59681649_59683675_59683754_59691930_59692028_59694616_59694692_59709838
46101	chr17	+	3522	7	ISM	ENSMUSG00000024085.14	ENSMUST00000086723.10	6991	22	113877	0	994	0	3prime_fragment	FALSE	canonical	3	63	junction_4	4.74926894959167	70	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTCTTCTGGAGTAATT	NA	False	NA	NA	False	NA	NA	NA	65021607	65062105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_65021708_65038198_65038333_65040718_65040861_65041928_65042063_65047674_65047879_65057778_65057890_65059408
46102	chr5	+	2046	8	NNC	ENSMUSG00000079562.8	novel	2193	9	NA	NA	-4126	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	264.089116065941	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTGAGGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	33515788	33530638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33515967_33517695_33517900_33520038_33520164_33523065_33523143_33525981_33526086_33527774_33527909_33528957_33529154_33529610
46103	chr6	-	1564	9	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-13	-28	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	141.419975162634	23	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCATTTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	113354350	113343643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113344142_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
46104	chr18	+	2200	10	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	1	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	809.257608270203	1	64	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGCTTTTTGTTTACAA	468	False	NA	NA	False	NA	NA	NA	61688384	61721326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701425_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713516_61720489
46105	chr1	-	2172	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	121	9	121	-7	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	1	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGAAGTGTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	65218219	65197783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
46107	chr14	+	774	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2181.31156875858	53	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1084	False	NA	NA	False	NA	NA	NA	76082778	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084165_76084240_76084683_76084801_76085538
46108	chr14	+	3745	19	ISM	ENSMUSG00000040818.11	ENSMUST00000037585.9	6638	20	12653	2610	-12440	1129	3prime_fragment	TRUE	canonical	3	24	junction_10	139.317383457102	58	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTTGGATTTTAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	26313385	26352867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_26313427_26313549_26313593_26320770_26320884_26321598_26321680_26324202_26324309_26325828_26325909_26327030_26327094_26328059_26328116_26329244_26329368_26329690_26329787_26333121_26333217_26337745_26337812_26338048_26338114_26340469_26340560_26347860_26347915_26348019_26348130_26348473_26348577_26349826_26349902_26350582
46109	chr17	+	2775	13	ISM	ENSMUSG00000024073.17	ENSMUST00000183249.2	4094	18	8286	273	3529	5	3prime_fragment	FALSE	canonical	1	3	junction_4	11.8611761642765	1	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGGCCTCTGAATGTAT	NA	False	NA	NA	False	NA	NA	NA	74969669	75010069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74993115_74993289_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
46110	chr11	-	1865	5	NNC	ENSMUSG00000057594.13	novel	911	5	NA	NA	-8	541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	70.9048658414922	407	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGGTATATGAGGTCCCA	NA	False	NA	NA	False	NA	NA	NA	120358267	120355150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358065_120358186
46111	chr15	-	1787	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	124	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	851.737120506662	1	79	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGGTTTCTTCCTTCG	3037	False	NA	NA	False	NA	NA	NA	77854721	77843212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843317_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848342_77849102_77849208_77850334_77850409_77850881_77850968_77851502_77851635_77852375_77852422_77852656_77852790_77854658
46112	chr5	+	1781	1	Antisense	novelGene_ENSMUSG00000034826.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTGGGACATCAGCTCA	8558	False	NA	NA	False	NA	NA	NA	92563610	92565391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92563600_92565400
46113	chr6	-	1701	10	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2267	-1586	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	81	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGGGGGCCCCTGGGAAG	NA	False	NA	NA	False	NA	NA	NA	83034521	83031713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83031812_83031889_83032027_83032106_83032669_83032874_83032951_83033045_83033125_83033350_83033414_83033520_83033625_83033737_83033859_83033957_83034374_83034476
46114	chr9	-	2442	15	NNC	ENSMUSG00000032312.8	novel	2390	15	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_14	48.9283107396601	132	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	57560701	57533928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57559114_57559276_57559849_57559899_57560559
46115	chr5	-	1214	1	Intergenic	novelGene_871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTGACTTTTAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	140343790	140342576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_140342600_140343800
46116	chr19	+	1130	3	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3136.5	27	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACTGTTTGTCTTGTGT	4156	False	NA	NA	False	NA	NA	NA	41900457	41907099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904135_41906228
46117	chr6	-	1772	10	NNC	ENSMUSG00000053907.11	novel	2804	9	NA	NA	-4	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	339.954608444229	23	50	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCTATTACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	72416535	72409778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72410306_72411322_72411379_72411963_72412098_72412188_72412372_72412793_72413001_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
46118	chr11	+	3749	1	Antisense	novelGene_ENSMUSG00000025574.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	46	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCACTTGTACTGGGCGA	NA	False	NA	NA	False	NA	NA	NA	117711803	117715552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_117711800_117715600
46119	chrX	+	2045	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	-43	-11	-43	7	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCAACTGTTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	100838218	100842255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
46120	chr7	-	2666	4	NNC	ENSMUSG00000030612.7	novel	768	4	NA	NA	-9458	-7718	intron_retention	FALSE	non_canonical	0	0	junction_1	0	20	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCACCATGAGCCTCTGTG	8969	False	NA	NA	False	NA	NA	NA	78442737	78433065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78433168_78433316_78433426_78438419_78438522_78440384
46121	chr8	+	1756	8	NIC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	-1	-3	intron_retention	FALSE	canonical	0	0	junction_1	477.3509811278	1236	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTACTGCTTTCTAGGCCT	NA	False	NA	NA	False	NA	NA	NA	70980410	70987973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70980487_70982040_70982326_70983589_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
46122	chr6	-	3659	3	NIC	ENSMUSG00000014551.9	novel	6073	4	NA	NA	13	-1	intron_retention	FALSE	canonical	3	830	junction_1	7.5	75	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATAGTAAGTGTGGCC	NA	False	NA	NA	False	NA	NA	NA	92161001	92151819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_92152190_92152689_92155798_92160820
46123	chr10	-	1212	8	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	8553	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	480.785326951899	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGAATGTTTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	85783090	85774513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779117_85779180_85779262_85779678_85779855_85782054_85782215_85783040
46124	chr6	-	1463	11	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2265	-1593	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCAGGGCCGCGGGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	83034519	83031720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83031812_83031889_83032027_83032106_83032261_83032486_83032670_83032876_83032951_83033046_83033125_83033350_83033414_83033520_83033624_83033737_83033859_83033957_83034374_83034476
46125	chr8	-	2097	5	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	1167	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	1857.40316032896	1	99	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	43758806	43748103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43756745_43756865_43757512_43757597_43758460
46126	chr4	-	2437	5	NIC	ENSMUSG00000028540.7	novel	2555	6	NA	NA	-5	5	intron_retention	TRUE	canonical	2	6	junction_4	30.7926533445885	3	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTCTTTATTCACTAAAG	NA	False	NA	NA	False	NA	NA	NA	117749188	117746098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117746874_117746951_117747129_117747214_117748316_117748511_117748625_117748917
46127	chr15	-	1514	10	FSM	ENSMUSG00000022422.14	ENSMUST00000110231.2	1499	10	-25	10	-14	-10	multi-exon	FALSE	canonical	3	26	junction_5	97.4314573887145	740	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTTTGCATATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	54953901	54939507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54946800_54946990_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
46128	chr5	+	1301	9	NNC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	435.367355660711	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTGCTATGCTTAATTG	NA	False	NA	NA	False	NA	NA	NA	134611616	134627181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_134611741_134615751_134615822_134619723_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
46129	chr5	-	3369	7	NNC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	-18594	-858	intron_retention	FALSE	canonical	0	0	junction_5	32.1580299286024	78	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAACCCTATATTACAAA	NA	False	NA	NA	False	NA	NA	NA	73823727	73790949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_73793042_73796725_73797324_73798025_73798212_73801614_73801825_73817744_73817831_73823363_73823482_73823648
46130	chr4	-	1283	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	29	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	2	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGCTACAGGAACTTCT	28	False	NA	NA	False	NA	NA	NA	41098154	41092736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41092960_41093397_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
46131	chr5	+	2481	7	Antisense	novelGene_ENSMUSG00000029153.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	500	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTTGCCAAGCTTTTA	NA	False	NA	NA	False	NA	NA	NA	73479555	73496279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_73481190_73483622_73483744_73485007_73485052_73486607_73486666_73489448_73489546_73493164_73493290_73495877
46132	chr7	-	1816	6	Fusion	ENSMUSG00000062116.11_ENSMUSG00000109885.2	novel	2042	5	NA	NA	-6408	-3	multi-exon	TRUE	non_canonical	0	0	junction_1	1.85472369909914	1	36	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCTTTAATGACTCTTGA	NA	False	NA	NA	False	NA	NA	NA	7544371	7117691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_7118806_7537806_7538198_7539350_7539449_7540595_7540722_7541866_7541905_7544322
46133	chr16	-	1441	9	Antisense	novelGene_ENSMUSG00000065208.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGGCGGACGGCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	22932559	22926508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_22926568_22927334_22927382_22927466_22927600_22928732_22928903_22928983_22929093_22930252_22930349_22930569_22930645_22931098_22931206_22931914
46134	chr13	+	1962	7	NIC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	-8	-2	intron_retention	FALSE	canonical	3	1274	junction_1	93.6614767245436	76	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGTCACATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	43551857	43555468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_43552135_43552210_43552272_43552986_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
46135	chr17	-	2183	11	NNC	ENSMUSG00000024039.16	novel	1826	9	NA	NA	-1002	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	136.4566231445	4	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACTCTTCCTATAAATG	7030	False	NA	NA	False	NA	NA	NA	31843034	31831647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31836973_31837055_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841863_31842735
46137	chr18	-	1726	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	39	1537	39	-1537	multi-exon	FALSE	canonical	3	1260	junction_1	0	1	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTTATGATGTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	37777218	37775080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
46138	chr12	-	1929	7	NNC	ENSMUSG00000021098.15	novel	2051	18	NA	NA	1	-1604	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11.6999525165228	19	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTCTTTAAATAAGGTA	NA	False	NA	NA	False	NA	NA	NA	72964679	72954611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_72955824_72956677_72956866_72959958_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
46139	chr6	-	2990	11	NNC	ENSMUSG00000029790.17	novel	3447	11	NA	NA	-12	-379	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	26.0624250598443	1	74	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACCCAATTCTGTTTTGG	-4	True	NA	NA	False	NA	NA	NA	30693711	30653836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30655850_30656477_30656694_30657335_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
46140	chr19	+	1987	4	FSM	ENSMUSG00000035372.3	ENSMUST00000235837.2	1875	4	-112	0	6	0	multi-exon	FALSE	canonical	2	2	junction_1	139.776806214606	535	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGTGGGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	3758298	3767880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_3758509_3764403_3764626_3765637_3765803_3766490
46141	chr19	-	3005	8	NIC	ENSMUSG00000025218.7	novel	2324	9	NA	NA	21	0	intron_retention	FALSE	canonical	3	33	junction_7	12.7775312999988	13	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	45548949	45540713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_45541610_45541947_45542117_45543529_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
46142	chr14	+	1286	13	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	-5	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	496.689876415187	15	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCAAAGGACTAACCATAA	NA	False	NA	NA	False	NA	NA	NA	45567279	45587148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581178_45586859
46143	chr2	-	1354	7	ISM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	321	0	27	0	3prime_fragment	FALSE	canonical	3	533	junction_6	61.03664655125	19	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	NA	False	NA	NA	NA	50186408	50169892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263
46144	chr7	-	2536	6	FSM	ENSMUSG00000039043.6	ENSMUST00000048731.6	2277	6	65	-324	65	324	multi-exon	FALSE	canonical	3	36	junction_1	5.76194411635517	149	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCACATCCTCTTGTTC	9958	False	NA	NA	False	NA	NA	NA	79585042	79574784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79576599_79577373_79577538_79577919_79578127_79579320_79579454_79581550_79581627_79584900
46146	chr14	+	1762	8	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	0	19	intron_retention	TRUE	canonical	3	13	junction_4	246.028370688572	1	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTTGATGTTTGTTAAG	NA	False	NA	NA	False	NA	NA	NA	54598290	54606113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54598375_54598778_54598926_54600738_54600877_54604165_54604308_54604481_54605150_54605249_54605413_54605609_54605691_54605774
46147	chr14	+	3610	1	NIC	ENSMUSG00000040822.8	novel	1843	2	NA	NA	88	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	100	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	NA	NA	NA	54924588	54928198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_54924600_54928200
46148	chr12	-	1860	6	NNC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	24.9847953763884	5	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATTTTATCCTTGTCGG	NA	False	NA	NA	False	NA	NA	NA	77008975	76984060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76985323_76985402_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
46149	chr11	-	1836	11	NNC	ENSMUSG00000020419.12	novel	1969	11	NA	NA	-165	10	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	71.3108687368202	41	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTATGTAACATGGGGT	NA	False	NA	NA	False	NA	NA	NA	4390910	4295803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390790
46150	chr15	-	2207	12	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	9.82827763762879	3	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAAAAAAAAAAGCCGG	6979	False	NA	NA	False	NA	NA	NA	98560790	98545886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550865_98556162_98556317_98560703
46151	chrX	-	3537	13	FSM	ENSMUSG00000067276.6	ENSMUST00000087316.6	3561	13	19	5	19	-5	multi-exon	FALSE	canonical	3	10	junction_3	5.06348584365444	23	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCAGTCTTGACTAGTT	NA	False	NA	NA	False	NA	NA	NA	142610391	142585231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_142586823_142587352_142587490_142587670_142587793_142588390_142588594_142588758_142588882_142590241_142590429_142590522_142590601_142590836_142591031_142591613_142591807_142592290_142592500_142593840_142593973_142603291_142603473_142610204
46152	chr9	+	3465	26	Antisense	novelGene_ENSMUSG00000032407.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	199	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTTCAGCGGAGGCAGCA	NA	False	NA	NA	False	NA	NA	NA	95343047	95393928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_95343599_95344757_95344932_95346414_95346552_95348607_95348712_95354097_95354252_95356470_95356537_95357254_95357351_95358159_95358323_95359458_95359576_95361321_95361407_95363705_95363788_95364146_95364308_95366222_95366385_95366459_95366526_95367611_95367724_95370805_95370845_95371754_95371964_95372141_95372313_95373146_95373250_95373437_95373532_95374378_95374441_95375154_95375285_95375755_95375873_95377888_95377987_95382740_95382884_95393859
46153	chr13	-	2643	7	NIC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	10	-5	intron_retention	TRUE	canonical	3	323	junction_2	16.4079926323186	25	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACTTGCAGGACTGGAG	NA	False	NA	NA	False	NA	NA	NA	100912397	100896186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100909290_100912194
46154	chr11	-	1478	9	ISM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	31	16554	7	-16	5prime_fragment	FALSE	canonical	3	124	junction_8	17.856633921319	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTAGCTTTTTTCAGAC	2649	False	NA	NA	False	NA	NA	NA	101117245	101098495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
46155	chr17	+	1293	5	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	858.014677904755	4	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGTTTAACTTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257634_29260180_29260268_29260357
46156	chr13	+	1293	4	NNC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	446	-3369	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	732.566720510835	10	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTCCTCATCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	92491679	92522192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_92491853_92492157_92492208_92494434_92494545_92521232
46157	chr2	-	1790	10	Antisense	novelGene_ENSMUSG00000017721.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	71	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTGCTGGACCACTCTA	6130	False	NA	NA	False	NA	NA	NA	164350161	164342056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_164342210_164342349_164342438_164342998_164343087_164343191_164343287_164343399_164343570_164344396_164344599_164348302_164348467_164348567_164348654_164349194_164349508_164349730
46158	chr15	+	3054	2	FSM	ENSMUSG00000050328.3	ENSMUST00000055562.3	1031	2	222	-2245	222	2245	multi-exon	FALSE	canonical	3	24	junction_1	0	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGATGTTTTGAGAACCA	NA	False	NA	NA	False	NA	NA	NA	102845413	102849289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102845892_102846713
46160	chr1	+	2025	16	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-4	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	891.478547133917	1	86	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATAAAATATTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724157	59750640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731710_59731888_59735136_59735250_59737571_59737619_59740043_59740109_59741971_59742107_59743221_59743358_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748158_59748296_59749653_59749812_59750429
46161	chr6	-	1102	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	109	17	109	-17	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	3	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGATTATAACAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	125471645	125437245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
46162	chr12	+	2832	9	NIC	ENSMUSG00000072946.13	novel	3168	10	NA	NA	1	-12	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	82.8657611743234	1	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTATGACTTATGAC	NA	False	NA	NA	False	NA	NA	NA	84332158	84362594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
46163	chr10	+	1627	10	NNC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	14	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4287.61291036584	1	94	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATATACCCCTCATTTA	NA	False	NA	NA	False	NA	NA	NA	127919188	127926126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127919268_127919802_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924200_127924403_127924825_127925028_127925887
46164	chr4	-	1251	11	Antisense	novelGene_ENSMUSG00000001604.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCAGGGCAGCAGCGGGCG	8335	False	NA	NA	False	NA	NA	NA	136002204	135975329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_135975427_135981054_135981118_135981773_135981953_135982459_135982596_135985231_135985296_135991755_135991920_135992180_135992240_135995319_135995473_135998541_135998689_136000952_136001029_136002091
46165	chr2	-	1425	5	ISM	ENSMUSG00000017664.17	ENSMUST00000109299.8	1926	10	6655	0	1123	0	3prime_fragment	FALSE	canonical	3	229	junction_4	10.1334840997556	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	NA	False	NA	NA	False	NA	NA	NA	165123020	165118473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705
46166	chr2	+	3137	3	FSM	ENSMUSG00000044641.8	ENSMUST00000052125.7	3399	3	256	6	256	-6	multi-exon	FALSE	canonical	3	144	junction_1	5.5	70	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTACTTTCTTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	167923179	167943117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167923280_167929261_167929485_167940303
46167	chr3	+	3671	5	ISM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	-5	4568	0	-2862	intron_retention	FALSE	canonical	3	56	junction_2	63.0371914031709	4	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCTGACAACCTAAATTC	8787	False	NA	NA	False	NA	NA	NA	30656787	30668082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589
46168	chr8	-	2759	16	NNC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	-5750	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	86.5785706101047	1	170	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	NA	False	NA	NA	NA	84460709	84449992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84450532_84450607_84450693_84450820_84451033_84451242_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455796_84456010_84456155_84456739_84456887_84458531_84458685_84460060_84460196_84460637
46169	chr10	+	1248	12	NNC	ENSMUSG00000058799.17	novel	1365	13	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	681.800036122174	141	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACATTTTTTTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	111309089	111330866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111326260_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
46170	chrX	+	2926	5	NNC	ENSMUSG00000067771.10	novel	2773	4	NA	NA	514	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	25.2339057618911	39	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTAGATGTCTAAGAC	NA	False	NA	NA	False	NA	NA	NA	72161166	72172869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72161363_72166673_72166746_72167084_72167132_72168423_72168590_72170424
46171	chr11	-	2714	19	NNC	ENSMUSG00000018425.19	novel	3813	18	NA	NA	152	-909	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	41.569219381653	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATCTCTTCAAGGCCT	8679	False	NA	NA	False	NA	NA	NA	86698420	86660580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263_86698307_86698344
46173	chr9	+	1065	9	NNC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	0	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	627.534859589489	20	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATACTTTCTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	54858073	54865325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864227_54865037
46174	chr1	-	2769	7	ISM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	-3	21350	-3	-10166	5prime_fragment	FALSE	canonical	3	1722	junction_3	108.096793045246	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAGCCTAAATGTGATAA	NA	False	NA	NA	False	NA	NA	NA	128345099	128312793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
46175	chr4	+	2249	2	Intergenic	novelGene_1794	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	52	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTACCCCTCCCACTGAT	NA	False	NA	NA	False	NA	NA	NA	8117544	8124215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_8117614_8122035
46176	chr4	-	1489	4	NNC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	266.241744785949	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGTTTCCTTATGTGTC	3	True	NA	NA	False	NA	NA	NA	41741320	41738495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41739581_41740549_41740643_41740884_41740977_41741101
46177	chr11	-	1852	12	NNC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	69.1590572999052	845	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	231	False	NA	NA	False	NA	NA	NA	61652899	61620479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643688_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
46178	chrX	-	3681	4	FSM	ENSMUSG00000031357.4	ENSMUST00000134629.2	720	4	-1902	-1059	-1902	207	multi-exon	FALSE	canonical	3	113	junction_1	18.3847763108502	5	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGAATTGTACGTATTTA	NA	False	NA	NA	False	NA	NA	NA	161648370	161639845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055
46179	chr2	-	2273	5	ISM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	3500	5	3494	-5	3prime_fragment	FALSE	canonical	3	382	junction_1	79.8561206170197	5	107	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTATAGTTTGTATTGTAT	NA	False	NA	NA	False	NA	NA	NA	168793692	168767285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464
46180	chr4	+	2638	10	NNC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	327.099184565186	1	107	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAATTGAGTTAA	9712	False	NA	NA	False	NA	NA	NA	155648296	155675443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155648437_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671958_155672141_155672242_155673066_155673150_155673784
46182	chr7	+	744	3	Antisense	novelGene_ENSMUSG00000030697.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAGGGAAAGTAGTATCAG	NA	False	NA	NA	False	NA	NA	NA	126385038	126386520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126385464_126385543_126385734_126386391
46183	chr6	+	1419	9	NNC	ENSMUSG00000030120.15	novel	1475	9	NA	NA	0	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1288.37765595923	3	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATGGAATAAAGGAGAATG	NA	False	NA	NA	False	NA	NA	NA	124908348	124913080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124908550_124909061_124909140_124909373_124909443_124909755_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
46184	chr4	+	3884	1	NIC	ENSMUSG00000028672.14	novel	1418	9	NA	NA	-1005	-12	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	75	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAATATAACATTCAAACG	NA	False	NA	NA	False	NA	NA	NA	135686032	135689916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_135686000_135689900
46185	chr2	+	2578	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	2	6	2	-5	multi-exon	TRUE	canonical	3	440	junction_4	51.3501655905104	976	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTCCCCTGTGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	30306052	30337811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
46186	chr1	-	3421	8	NIC	ENSMUSG00000026632.18	novel	1196	10	NA	NA	0	-4	intron_retention	FALSE	canonical	3	19	junction_2	9.0846360546198	9	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAAACTGTATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	190795101	190778045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_190778518_190781478_190781557_190785056_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
46187	chr18	-	2229	7	Antisense	novelGene_ENSMUSG00000117461.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	56	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTCTGTGACCACCGCC	NA	False	NA	NA	False	NA	NA	NA	6790183	6765186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_6765331_6770051_6770115_6778497_6778556_6783118_6783191_6784567_6784687_6784936_6785003_6788476
46188	chr19	+	2020	1	NIC	ENSMUSG00000024772.10	novel	3353	5	NA	NA	1470	-207	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTCCCAAGCCTGCGTAA	1893	False	NA	NA	False	NA	NA	NA	6345680	6347700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6345700_6347700
46189	chr6	+	2497	18	Antisense	novelGene_ENSMUSG00000015112.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	108	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCCACGCCCTCCTGG	NA	False	NA	NA	False	NA	NA	NA	6041783	6217143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_6042332_6042557_6042653_6042743_6042897_6052767_6052906_6073403_6073529_6095138_6095226_6096667_6096725_6109187_6109334_6109931_6110022_6113937_6114014_6114216_6114321_6114970_6115108_6117097_6117245_6131627_6131770_6152411_6152522_6180968_6181116_6191270_6191316_6216993
46190	chr14	+	2197	9	NNC	ENSMUSG00000022074.7	novel	3179	8	NA	NA	19	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	23.1179043167844	5	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAGAGAGCAGTGTAC	NA	False	NA	NA	False	NA	NA	NA	70004952	70021851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015161_70015265_70017952_70018023_70019680_70020203_70021151
46191	chr15	-	2056	15	NNC	ENSMUSG00000022429.12	novel	2219	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.6742744268838	99	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGATTCTGCATTCA	NA	False	NA	NA	False	NA	NA	NA	79489300	79445697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79446007_79446160_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
46192	chr1	+	1266	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	59	187	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTATTCTTATTACCTGG	4220	False	NA	NA	False	NA	NA	NA	135159791	135161150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_135160718_135160810
46193	chr5	+	1914	15	ISM	ENSMUSG00000028973.19	ENSMUST00000073076.12	2939	16	265	1295	12	-1274	5prime_fragment	FALSE	canonical	3	156	junction_4	17.2852715409651	3	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGGACGAGGCCACCAG	NA	False	NA	NA	False	NA	NA	NA	24599417	24613648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565
46195	chr19	+	1715	10	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	-4	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	78.2190655928733	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGGGTCTGTGCCGTG	4249	False	NA	NA	False	NA	NA	NA	46345369	46363693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884_46362936_46363449
46196	chr9	+	2043	11	NNC	ENSMUSG00000032077.6	novel	2539	10	NA	NA	8	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	39.716998879573	4	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATCATTTCCTAACTGG	NA	False	NA	NA	False	NA	NA	NA	46194313	46210076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199154_46199309_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
46197	chr4	-	2290	3	FSM	ENSMUSG00000050890.16	ENSMUST00000061234.14	4686	3	112	2284	112	1259	multi-exon	FALSE	canonical	3	10	junction_2	24	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAATGGGACTGGTAATCA	3761	False	NA	NA	False	NA	NA	NA	134015094	134004596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134006428_134011556_134011859_134014937
46198	chr13	+	1881	19	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	62	6937	-37	38	5prime_fragment	FALSE	canonical	3	649	junction_6	73.4657054450797	1	47	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGTGAGAATCGAGG	1272	False	NA	NA	False	NA	NA	NA	59733170	59776799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731
46199	chr4	+	2259	3	FSM	ENSMUSG00000085843.2	ENSMUST00000133455.2	2251	3	-3	-5	-3	5	multi-exon	FALSE	canonical	3	22	junction_2	4	121	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTGCCTTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	98682001	98687142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_98682120_98684245_98684324_98685079
46200	chr9	-	687	1	NIC	ENSMUSG00000032112.11	novel	935	4	NA	NA	2591	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTGTTTTCTCTCCTA	4622	False	NA	NA	False	NA	NA	NA	44315748	44315061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44315100_44315700
46201	chr6	-	1038	5	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	0	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	802.821742356297	2	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	NA	False	NA	NA	NA	124791117	124787677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124788479_124788489_124789583_124789669_124789752_124789877_124790970
46202	chr15	-	2034	11	NNC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	306	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	344.755797630729	3	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	NA	False	NA	NA	NA	98431819	98416700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98417279_98417352_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
46203	chr8	-	2307	12	NIC	ENSMUSG00000037103.9	novel	2199	13	NA	NA	-18	-2	intron_retention	FALSE	canonical	3	169	junction_6	21.1695243293414	180	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCTGGTGTCCTGTTCT	9239	False	NA	NA	False	NA	NA	NA	84831415	84823702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
46204	chr4	+	2199	19	Intergenic	novelGene_2153	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTAGGCCAACCCCCCT	9564	False	NA	NA	False	NA	NA	NA	148095428	148123249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_148095587_148097073_148097260_148098131_148098237_148098320_148098511_148098588_148098739_148098953_148099080_148101302_148101436_148101952_148102125_148102363_148102476_148103298_148103431_148104174_148104232_148105914_148105984_148107822_148107951_148108565_148108673_148110989_148111056_148113009_148113073_148113843_148113910_148122364_148122435_148123140
46205	chr7	-	2545	3	FSM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	-23	-216	-23	0	multi-exon	FALSE	canonical	3	199	junction_2	122.5	175	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	4249	False	NA	NA	False	NA	NA	NA	5016260	5010057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_5012205_5015676_5016022_5016207
46208	chr17	+	2640	11	FSM	ENSMUSG00000064120.15	ENSMUST00000024797.16	2646	11	4	2	4	-2	multi-exon	FALSE	canonical	3	15	junction_10	7.06328535456412	70	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGGATTGGGGACTCTT	NA	False	NA	NA	False	NA	NA	NA	49735395	49762458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759886_49761057
46209	chr7	-	3403	3	Intergenic	novelGene_2917	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	44	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGTTTAAGCAACCAATT	NA	False	NA	NA	False	NA	NA	NA	29625727	29621948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_29622161_29622340_29623485_29623680
46210	chr1	-	3087	13	NIC	ENSMUSG00000046836.14	novel	3430	14	NA	NA	26	-1353	intron_retention	FALSE	canonical	3	98	junction_3	13.4130429889053	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGACGTGAAACCTGTAAA	NA	False	NA	NA	False	NA	NA	NA	183078510	183059984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183076015_183076340_183076429_183078446
46211	chr2	+	3255	3	ISM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	44413	-1457	37993	0	3prime_fragment	FALSE	canonical	3	56	junction_1	1	68	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCAGTTGCCTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	4608979	4618852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_4609063_4610780_4610878_4615777
46212	chr3	-	2327	16	Antisense	novelGene_ENSMUSG00000105395.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	62	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGGGCAGGGATTAATTC	3806	False	NA	NA	False	NA	NA	NA	95399017	95367680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95367741_95374107_95374146_95377484_95377699_95381846_95382061_95383387_95383502_95387512_95387570_95388062_95388149_95391080_95391158_95392167_95392303_95394557_95394632_95395662_95395819_95396900_95397014_95397190_95397266_95397563_95397684_95397857_95397964_95398329
46213	chr14	-	1246	6	NNC	ENSMUSG00000015759.12	novel	789	6	NA	NA	48	-103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	210.694660587306	174	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGCTGTGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47025743	47013126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47013292_47013355_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
46214	chr17	+	2616	4	NNC	ENSMUSG00000071037.7	novel	741	4	NA	NA	44	-37879	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_3	37.6769897358528	14	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAATTCAACCTCTGACTT	2271	False	NA	NA	False	NA	NA	NA	85398077	85436057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_85398292_85403917_85404091_85421210_85421276_85433893
46215	chr11	+	1486	10	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	0	24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1196.04094855372	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAATTGGAGGTCATTAAA	NA	False	NA	NA	False	NA	NA	NA	107370353	107388583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107383071_107385395_107385633_107386513_107386592_107388349
46216	chrX	+	1970	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	17.7330827049958	62	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	NA	False	NA	NA	NA	149371246	149426874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_149371410_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
46217	chr3	+	2327	17	NNC	ENSMUSG00000027774.17	novel	4078	18	NA	NA	1531	258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	182.151111288814	1	95	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGATGTATATATAATAT	NA	False	NA	NA	False	NA	NA	NA	67338979	67382395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357105_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381925_67382051
46218	chr4	+	2039	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-1	134	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	248.238111497812	1	70	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTTTTATTCCTACTC	NA	False	NA	NA	False	NA	NA	NA	155954070	155973324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969664_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
46219	chr11	+	1492	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	20	1	20	-1	multi-exon	FALSE	canonical	0	0	junction_3	92.1316449435263	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCATGTTTTTAGATATC	NA	False	NA	NA	False	NA	NA	NA	71933300	71938195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
46220	chr2	-	2155	8	NIC	ENSMUSG00000002109.15	novel	2228	9	NA	NA	20	0	intron_retention	FALSE	canonical	1	4	junction_3	33.8857624668412	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAAAAACCCAAAAGCCC	3039	False	NA	NA	False	NA	NA	NA	91067285	91041932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_91042358_91042624_91042671_91042794_91042960_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
46221	chr11	+	938	6	Intergenic	novelGene_2388	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCATGTCGGTGTGCGAG	NA	False	NA	NA	False	NA	NA	NA	68104075	68276312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_68104163_68117362_68117437_68148280_68148335_68151322_68151475_68168250_68168438_68275928
46222	chr3	-	1095	8	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	19555	-1390	at_least_one_novel_splicesite	FALSE	canonical	3	232	junction_4	27.4560873886626	3	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGGCATAATTACTATAAA	NA	False	NA	NA	False	NA	NA	NA	97497953	97479740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869
46223	chr15	+	1586	10	Antisense	novelGene_ENSMUSG00000022234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGGGGACCACTCGGGAAG	NA	False	NA	NA	False	NA	NA	NA	31590962	31601887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_31591206_31592796_31592930_31593012_31593201_31593662_31593783_31594244_31594393_31594479_31594672_31595789_31595987_31597553_31597722_31598147_31598210_31601752
46224	chr10	-	4160	8	NIC	ENSMUSG00000001151.11	novel	6762	30	NA	NA	-3068	-32	intron_retention	FALSE	canonical	3	177	junction_6	23.3832313892687	4	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTGGCAAAACAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	76207735	76187132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192989_76203141_76203316_76204564_76204668_76205668
46225	chr5	+	1761	4	FSM	ENSMUSG00000029177.10	ENSMUST00000134372.2	1010	4	-555	-196	-555	-11	multi-exon	FALSE	canonical	3	1620	junction_2	71.7263317524789	342	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATGTGAGCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	30828743	30831742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_30829915_30830325_30830404_30830636_30830788_30831381
46226	chr4	+	1465	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	49	1862	-30	-798	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	3	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGACTTTGCCCTGTAT	-8	True	NA	NA	False	NA	NA	NA	40722528	40733102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
46227	chr11	-	2308	10	NIC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-49	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	306.999135399112	1	100	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	8481	False	NA	NA	False	NA	NA	NA	69572721	69563946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
46229	chr8	+	1403	7	FSM	ENSMUSG00000091490.4	ENSMUST00000209872.2	1395	7	-7	-1	-7	1	multi-exon	FALSE	canonical	3	6	junction_4	183.817542386163	29	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGGCTCTCTGCATGTG	NA	False	NA	NA	False	NA	NA	NA	43633570	43646919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43643105_43643129_43643305_43643407_43646239
46230	chr8	-	2228	1	NIC	ENSMUSG00000031974.9	novel	4306	13	NA	NA	28431	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAATCTGTGTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	124681430	124679202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_124679200_124681400
46231	chr5	+	3190	21	FSM	ENSMUSG00000029602.12	ENSMUST00000156722.2	3251	21	51	10	51	-10	multi-exon	TRUE	canonical	3	12	junction_7	7.30479294709987	52	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGCTTAGCCGTGACGT	NA	False	NA	NA	False	NA	NA	NA	120787303	120817652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_120787600_120790878_120790936_120792870_120792985_120793132_120793195_120797567_120797698_120800075_120800158_120800248_120800381_120800983_120801070_120801790_120801909_120802035_120802190_120802510_120802576_120802810_120802924_120804307_120804501_120808340_120808479_120809605_120809751_120812631_120812805_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
46234	chr4	+	1416	2	FSM	ENSMUSG00000086290.10	ENSMUST00000137343.9	1416	2	-1	1	0	-1	multi-exon	FALSE	canonical	3	139	junction_1	0	269	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCTCTTTTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	132035986	132038332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132036219_132037148
46235	chr1	-	2835	11	ISM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-2	2076	-2	-1585	5prime_fragment	FALSE	canonical	3	59	junction_7	12.5463141997959	7	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCTTTGAATACATATAAT	NA	False	NA	NA	False	NA	NA	NA	90017868	89971932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
46236	chr11	+	2031	6	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	13	11	intron_retention	FALSE	non_canonical	0	0	junction_2	571.849980327009	6	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGGTGTCTTGTAAATAG	NA	False	NA	NA	False	NA	NA	NA	101518780	101526909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101518891_101519098_101519283_101521063_101522163_101524510_101524727_101525613_101525700_101526573
46237	chr11	+	1893	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	442	-2	-65	0	multi-exon	FALSE	canonical	3	72	junction_2	51.4605431374369	320	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	5049367	5056093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
46238	chr16	-	1714	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	24	-104	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1194.85699981211	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTTTGAGACAATAAAATAT	1074	False	NA	NA	False	NA	NA	NA	11021075	11010937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011602_11012323_11012582_11014154_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021010
46239	chr15	-	1666	11	NNC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_2	671.23037029026	3	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCTGAAGTCCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	75952731	75942040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942597_75942822_75942943_75943167_75943314_75943354_75943718_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947682_75949449_75949500_75952718
46241	chr10	-	2199	8	NNC	ENSMUSG00000000901.18	novel	2288	8	NA	NA	7	-13	intron_retention	FALSE	non_canonical	0	0	junction_1	98.0491338720604	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTTCTAAGCGCCT	5090	False	NA	NA	False	NA	NA	NA	75768302	75759069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75759937_75761253_75761512_75762244_75762446_75762593_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
46244	chr16	-	2687	2	Genic_Genomic	ENSMUSG00000022718.13	novel	1246	6	NA	NA	-1103	-3899	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACCCTGCCTACCCCAG	4925	False	NA	NA	False	NA	NA	NA	18084236	18081335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_18082778_18082991
46246	chr4	+	1761	12	NNC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_11	206.229111138539	30	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9693	False	NA	NA	False	NA	NA	NA	155648277	155675454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155675050
46247	chr17	+	1827	10	NNC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	82.474238402061	6	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGGCAAGTGTTTACA	NA	False	NA	NA	False	NA	NA	NA	12338213	12438529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429596_12429637_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
46248	chr8	-	2908	19	NIC	ENSMUSG00000037300.20	novel	3148	21	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	125	junction_15	88.9418592170619	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCGTGGTCAGTTTGGTCG	NA	False	NA	NA	False	NA	NA	NA	125448709	125398072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
46250	chr10	-	1714	2	NNC	ENSMUSG00000038510.13	novel	479	5	NA	NA	-7099	-7789	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAAAAAATCTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	40110893	40109124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40110541_40110595
46253	chr14	-	1139	5	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1563.6088665328	1	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63737756	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731490_63733132_63733196_63734393_63734465_63737550
46254	chr11	-	1186	1	ISM	ENSMUSG00000041961.15	ENSMUST00000109867.8	6311	9	167328	10	104221	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	36	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATGTGTCACATGTGGT	2282	False	NA	NA	False	NA	NA	NA	5227519	5226333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5226300_5227500
46255	chr13	-	1738	11	NNC	ENSMUSG00000021417.16	novel	1426	10	NA	NA	43	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_6	80.3893027709533	150	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	NA	NA	NA	35178062	35161730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35173402_35173682_35174163_35174353_35174700_35174800_35177050_35177312_35177996
46256	chr12	-	2707	1	Intergenic	novelGene_4309	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACTCTCAGCAGTC	NA	False	NA	NA	False	NA	NA	NA	20129097	20126390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_20126400_20129100
46257	chr8	+	6512	9	Antisense	novelGene_ENSMUSG00000031561.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	75	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGGAGAGAGACAAAGGG	NA	False	NA	NA	False	NA	NA	NA	48783828	48870284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_48788812_48793988_48794193_48795293_48795489_48795651_48795752_48796266_48796478_48802233_48802448_48820344_48820469_48848470_48848712_48870044
46258	chr7	+	2198	4	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	0	-14	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	35.6121078036982	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGAAGTACAAATACCCA	2892	False	NA	NA	False	NA	NA	NA	43256648	43267695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43256742_43261406_43261534_43261970_43262064_43265810
46259	chr4	-	1928	11	Antisense	novelGene_ENSMUSG00000028252.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTGGCTGGGCTGAACT	NA	False	NA	NA	False	NA	NA	NA	21749210	21727790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_21727913_21730392_21730503_21732216_21732302_21732488_21732557_21735414_21735469_21740591_21740678_21742642_21742703_21743244_21743312_21746346_21746428_21746653_21746773_21748134
46260	chr9	+	1990	18	NNC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	294.192837447713	2	52	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21914303	21925518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917837_21917954_21919539_21919619_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
46261	chr10	-	2467	14	FSM	ENSMUSG00000040462.14	ENSMUST00000080975.6	2458	14	-9	0	-3	0	multi-exon	FALSE	canonical	3	172	junction_9	22.2351605990131	142	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCAGGCTCTGTGGGGA	NA	False	NA	NA	False	NA	NA	NA	126957003	126931518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_126932242_126932498_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
46262	chr8	+	1657	5	NIC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	7	-2	intron_retention	FALSE	canonical	3	844	junction_2	28.3240180765371	33	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCACATGTCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	71819867	71822371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71820338_71820413_71820493_71820602_71820756_71821193_71821948_71822170
46263	chr12	-	2169	4	NNC	ENSMUSG00000054302.16	novel	590	3	NA	NA	0	356	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	207.004562483267	29	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGTTCATGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	54742647	54718083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_54718660_54719217_54720576_54739658_54739742_54742495
46264	chr5	+	2884	12	FSM	ENSMUSG00000029283.18	ENSMUST00000031221.12	2961	12	64	13	5	-12	multi-exon	FALSE	canonical	3	169	junction_8	37.8828119074671	1	139	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGATGCTTATATCAGA	NA	False	NA	NA	False	NA	NA	NA	107112251	107132285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
46266	chr16	-	1780	10	Antisense	novelGene_ENSMUSG00000022841.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAGAACAGACCTAGGTA	9523	False	NA	NA	False	NA	NA	NA	20362648	20356380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20356484_20358056_20358322_20359080_20359166_20359717_20359860_20359956_20360112_20360515_20360609_20360698_20360849_20360953_20361046_20361392_20361496_20362056
46268	chr2	-	2121	2	Antisense	novelGene_ENSMUSG00000026810.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATACATCCGGTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	32463576	32460896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_32462410_32462968
46269	chr11	+	2305	12	NIC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	11	-41	intron_retention	FALSE	canonical	3	378	junction_9	45.3352981262762	8	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGGGTGCGGGGAA	NA	False	NA	NA	False	NA	NA	NA	60345427	60359539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
46271	chr5	-	2094	2	ISM	ENSMUSG00000047881.15	ENSMUST00000087327.13	3093	8	44073	9	6027	-9	3prime_fragment	FALSE	canonical	3	541	junction_1	0	5	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTTGAATGAGCGACAT	NA	False	NA	NA	False	NA	NA	NA	64082093	64066416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_64068495_64082077
46272	chr10	-	1150	9	NNC	ENSMUSG00000019942.14	novel	1253	9	NA	NA	-5	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.545257235823	7050	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCACTGTGGTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	69188745	69174133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_69174288_69174331_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
46273	chr10	+	1880	1	FSM	ENSMUSG00000087993.3	ENSMUST00000157368.3	74	1	-1414	-392	-1414	392	mono-exon	FALSE	NA	NA	NA	NA	NA	14	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAATAAAGTGATCTCGT	NA	False	NA	NA	False	NA	NA	NA	80663216	80665096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80663200_80665100
46274	chr17	+	3067	4	NIC	ENSMUSG00000007038.6	novel	3619	5	NA	NA	-11	-628	intron_retention	FALSE	canonical	3	122	junction_1	26.5120517668642	26	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACTTAAAATTTTTGATG	7973	False	NA	NA	False	NA	NA	NA	35150278	35154269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35150524_35150891_35151085_35151541_35153482_35153580
46275	chr11	-	4060	15	Antisense	novelGene_ENSMUSG00000059474.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	127	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCCTTCCCTGAGGAACTC	NA	False	NA	NA	False	NA	NA	NA	93836594	93776689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_93776944_93795980_93796184_93799628_93799758_93801102_93801230_93803198_93803287_93812196_93812308_93813970_93814107_93814616_93814702_93815247_93815494_93817008_93817149_93820435_93820592_93822643_93822720_93823043_93823281_93824706_93824783_93834598
46276	chr6	-	2096	4	ISM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	39	0	0	0	intron_retention	FALSE	canonical	3	875	junction_2	70.8723421998235	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	NA	NA	NA	72339376	72336696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394
46277	chr10	-	1867	9	NIC	ENSMUSG00000019822.13	novel	1602	10	NA	NA	7	-1	intron_retention	FALSE	canonical	3	150	junction_8	17.8465682975747	246	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTAGTGGCTCTACCTT	NA	False	NA	NA	False	NA	NA	NA	41366358	41363174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365348_41365459_41365557_41365978
46278	chr11	-	1686	13	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_4	66.8112494686004	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8332	False	NA	NA	False	NA	NA	NA	82799208	82791597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
46279	chr11	-	1901	5	ISM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	4463	-411	4461	411	3prime_fragment	FALSE	canonical	3	408	junction_2	31.4722099637124	16	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTCCTAGTGAATCACAG	8674	False	NA	NA	False	NA	NA	NA	95998327	95989740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256
46280	chr8	+	1832	4	FSM	ENSMUSG00000055835.11	ENSMUST00000211926.2	1409	4	-95	-328	-38	-1	multi-exon	FALSE	canonical	3	27	junction_2	24.1430919496424	316	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGTGTTTTTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	112370073	112397642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_112370245_112385017_112385074_112392751_112392837_112396122
46281	chr17	+	2067	2	FSM	ENSMUSG00000034165.17	ENSMUST00000182281.2	3858	2	91	1700	-2	-991	multi-exon	FALSE	canonical	3	3645	junction_1	0	19	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTGGGGTAGGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	47904451	47907399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47904778_47905658
46282	chr15	-	3842	6	NNC	ENSMUSG00000023044.3	novel	691	4	NA	NA	-10866	-2280	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4	2	91	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTCGGTGTCCTCCA	NA	False	NA	NA	False	NA	NA	NA	102124025	102113158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102113519_102116201_102116354_102116704_102116795_102117185_102117309_102117586_102117707_102121028
46283	chr8	-	935	8	Antisense	novelGene_ENSMUSG00000031813.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGGACGCACAGGTCATC	8956	False	NA	NA	False	NA	NA	NA	72000670	71995775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_71995874_71996028_71996128_71997867_71997994_71998189_71998306_71998388_71998498_71999613_71999678_72000220_72000277_72000403
46284	chr2	+	845	6	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	2580	junction_5	1584.70918467711	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
46289	chr8	-	1578	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	-147	0	-143	0	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	764	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	7469	False	NA	NA	False	NA	NA	NA	110894985	110869169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
46292	chr9	+	1158	7	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1438	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9121.17797125642	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082112	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083511_64084575_64084760_64085170_64085300_64085504
46296	chrX	+	4650	12	ISM	ENSMUSG00000041115.17	ENSMUST00000112605.8	6017	15	59810	17	25118	-16	3prime_fragment	TRUE	canonical	1	2	junction_9	2.42234774444986	26	22	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACCTTGTGCTCACCT	NA	False	NA	NA	False	NA	NA	NA	150987077	151008215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150987330_150991765_150992662_150994205_150994368_150995017_150995141_150996282_150996450_150998496_150998637_150999336_150999463_151001872_151001973_151002727_151002890_151004642_151004817_151005278_151005329_151005917
46297	chr17	+	1126	8	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1256.14824290896	213	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135318	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139702_13143196
46298	chr11	+	1249	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	-50	2	-50	-2	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	2603	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCAGTGTTGGGCAGCT	3515	False	NA	NA	False	NA	NA	NA	51654463	51682750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
46299	chr15	-	1552	1	FSM	ENSMUSG00002076288.1	ENSMUST00020182350.1	138	1	-535	-879	-535	879	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGTTAAAATGCTATCA	NA	False	NA	NA	False	NA	NA	NA	98418269	98416717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98416700_98418300
46300	chr15	+	1423	10	NNC	ENSMUSG00000016541.11	novel	1937	12	NA	NA	212	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	524.640005911167	1	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	NA	False	NA	NA	NA	85220657	85347413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85220782_85243662_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271367_85322326_85322367_85346480_85346669_85347121
46301	chr3	-	3658	4	NNC	ENSMUSG00000027708.15	novel	621	5	NA	NA	12000	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88.9281857580724	1	150	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCCTTTTATTGCTTCCA	NA	False	NA	NA	False	NA	NA	NA	35951994	35946254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_35948367_35948452_35949849_35951612_35951710_35951941
46302	chr7	-	1618	11	NIC	ENSMUSG00000109926.2	novel	789	6	NA	NA	-1966	4289	combination_of_known_splicesites	FALSE	canonical	1	15	junction_5	1537.7938223312	8	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCCCTTGTCCGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	45138201	45111118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
46303	chr5	-	3079	3	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	11830	6291	-1972	2661	internal_fragment	FALSE	canonical	3	182	junction_1	5	101	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTGTGCTGCCTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	97247602	97241129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_97243920_97245337_97245429_97247404
46304	chr13	-	1093	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.451709921107	56	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311959_34312914_34312966_34313228_34313338_34314159
46305	chr17	+	4180	36	Antisense	novelGene_ENSMUSG00000024120.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	308	23	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATCTGGCTTGGCTCAGA	NA	False	NA	NA	False	NA	NA	NA	85012674	85084536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_85012903_85013328_85013470_85014521_85014603_85015511_85015591_85017718_85017835_85017962_85018105_85020121_85020322_85024053_85024144_85030124_85030252_85033730_85033840_85033957_85034101_85038572_85038660_85039172_85039246_85047497_85047605_85047971_85048096_85056387_85056597_85057935_85058022_85058651_85058783_85059736_85059851_85060156_85060201_85060540_85060622_85060833_85060942_85061969_85062036_85069365_85069447_85071879_85071973_85074419_85074542_85077024_85077131_85077424_85077536_85077781_85077928_85078270_85078416_85078851_85078981_85079521_85079608_85080471_85080526_85080627_85080756_85082814_85082942_85084370
46306	chr9	+	880	3	ISM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	13642	10	13642	-10	3prime_fragment	FALSE	canonical	3	2950	junction_1	203	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAAACTATTCTCGTTGG	3634	False	NA	NA	False	NA	NA	NA	78112870	78116621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_78113336_78115082_78115215_78116338
46307	chr7	+	1805	9	NNC	ENSMUSG00000025510.15	novel	1865	8	NA	NA	-6	-15	intron_retention	TRUE	non_canonical	0	0	junction_8	107.750580044842	1	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTCAATAAATGTAAATGT	NA	False	NA	NA	False	NA	NA	NA	141047298	141051361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463_141050639_141050680
46308	chr19	+	1724	10	NNC	ENSMUSG00000003559.9	novel	1719	9	NA	NA	35	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_9	69.2980679544691	24	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACAATGGATGTCTGTAGT	6519	False	NA	NA	False	NA	NA	NA	46696441	46729532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46726951_46726998_46728899
46309	chr11	-	2088	15	NNC	ENSMUSG00000018848.5	novel	2109	15	NA	NA	-1	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	327.135098161264	1	73	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACAGCTATGCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	35725334	35699218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716821_35716929_35717299_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
46310	chr2	-	1779	5	ISM	ENSMUSG00000041777.13	ENSMUST00000058615.10	2821	10	6402	873	6268	-873	intron_retention	FALSE	canonical	3	42	junction_4	20.6321957144653	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGAATAATTATCAATTCA	NA	False	NA	NA	False	NA	NA	NA	73136643	73114321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233
46311	chr8	-	2935	6	NNC	ENSMUSG00000031916.18	novel	2954	6	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	49.4748420917136	96	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCTACTGGTAGCCACT	NA	False	NA	NA	False	NA	NA	NA	107783315	107772921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_107773904_107775437_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
46312	chr12	+	1812	1	NIC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	2627	-134	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGTAAATTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	59116376	59118188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_59116400_59118200
46313	chr17	-	2426	20	NNC	ENSMUSG00000040688.17	novel	5226	22	NA	NA	8	-196	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	135.58783478553	2	111	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTTTCTCATGTGA	NA	False	NA	NA	False	NA	NA	NA	24926597	24919627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921703_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
46315	chr16	+	1239	8	NNC	ENSMUSG00000022871.14	novel	1520	8	NA	NA	-70	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	205.671622560164	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCCGAGGAGTCCAAGG	NA	False	NA	NA	False	NA	NA	NA	22737013	22758165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754474_22756615_22756708_22758025
46316	chr8	+	2188	14	NNC	ENSMUSG00000042870.16	novel	2267	15	NA	NA	-2	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	116.858231005976	4	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCAAATAAAAGTAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	75760330	75796715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794156_75794210_75795877
46317	chr11	-	2307	3	FSM	ENSMUSG00000020801.9	ENSMUST00000129264.2	837	3	11	-1481	11	-3	multi-exon	FALSE	canonical	3	203	junction_1	10.5	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCAGGATTGCTCCACTT	NA	False	NA	NA	False	NA	NA	NA	72105868	72102552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72104700_72104963_72105042_72105786
46318	chr12	+	2165	14	ISM	ENSMUSG00000020608.8	ENSMUST00000218022.2	5272	26	21	27694	-3	-3558	5prime_fragment	FALSE	canonical	3	71	junction_3	163.45352016533	3	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAATTTGTGTAGAAACA	4557	False	NA	NA	False	NA	NA	NA	11316126	11342086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_11316290_11321729_11321873_11323994_11324113_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526
46319	chr2	+	2705	10	Antisense	novelGene_ENSMUSG00000026723.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGGCCTACCGGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	13514790	13549472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_13516501_13520824_13520958_13521471_13521525_13524563_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530505_13549378
46320	chr13	-	1564	11	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	8	-1003	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	525.106360654677	1	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAGGAGCAAACACAGTGA	NA	False	NA	NA	False	NA	NA	NA	74498346	74476416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482421_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
46322	chr12	+	1707	14	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	-1515	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	289.832700161387	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTAGTTTCTCCGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	21340271	21364824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352504_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21358909_21364648
46323	chr15	+	1257	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	-181	-74	181	mono-exon	FALSE	NA	NA	NA	NA	NA	8	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	88	False	NA	NA	False	NA	NA	NA	12574900	12576157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12576200
46324	chr17	+	1678	9	Fusion	ENSMUSG00000067931.7_ENSMUSG00000117013.2	novel	2652	6	NA	NA	15	380	multi-exon	FALSE	non_canonical	0	0	junction_5	50.5364967127719	2	39	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGCACATTATGAATGCA	NA	False	NA	NA	False	NA	NA	NA	21787284	21852477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21831552_21831674_21848176_21848248_21849785_21849913_21851760
46326	chr10	-	3016	2	FSM	ENSMUSG00000049038.4	ENSMUST00000214607.2	477	2	-1432	-1107	-14	-8	multi-exon	FALSE	canonical	3	50	junction_1	0	138	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGGAACTATTATTCCAA	NA	False	NA	NA	False	NA	NA	NA	84963873	84955304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_84956679_84962231
46327	chr2	-	1245	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	39	-1017	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5761.90989928687	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3824	False	NA	NA	False	NA	NA	NA	154734663	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715558_154718542_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730205_154734609
46328	chr1	+	1576	6	NNC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	81.3864853645862	8	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097903	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101663_171103814
46329	chr11	+	2883	1	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	2507	2262	mono-exon	FALSE	NA	NA	NA	NA	NA	1	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAATCCCCAGGAACCAC	NA	False	NA	NA	False	NA	NA	NA	113578418	113581301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_113578400_113581300
46330	chr9	+	2052	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	18	531	18	-531	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	9	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTGAAAAAAAAAAAAATGT	2144	False	NA	NA	False	NA	NA	NA	114517875	114552839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
46331	chr10	+	2504	16	FSM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-49	0	-49	0	multi-exon	FALSE	canonical	3	28	junction_12	10.0598210719674	114	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTAGAGTCCCTTCTTT	894	False	NA	NA	False	NA	NA	NA	58333720	58412066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58380738_58380932_58397722_58397900_58409410_58409550_58411510
46333	chr11	+	2134	3	FSM	ENSMUSG00000063316.14	ENSMUST00000139939.2	536	3	-18	-1580	-18	-15	multi-exon	FALSE	canonical	3	8909	junction_1	1362	11	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAATACAA	2363	False	NA	NA	False	NA	NA	NA	101333245	101336340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101333283_101333548_101333632_101334326
46334	chr17	+	1570	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	80	31	1	-20	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAACAAATAGCCTTT	NA	False	NA	NA	False	NA	NA	NA	27775627	27782617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
46335	chr15	+	2594	8	NIC	ENSMUSG00000023272.5	novel	1366	10	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	902	junction_1	111.406591238708	3	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGACGTGTTGGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	88703846	88710885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_88704038_88704133_88704217_88704731_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
46337	chr14	+	4369	5	FSM	ENSMUSG00000094021.8	ENSMUST00000169215.8	984	5	-3381	-4	-3381	4	multi-exon	FALSE	canonical	0	0	junction_3	8	159	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAACACAGCAGTGTA	NA	False	NA	NA	False	NA	NA	NA	15421421	15433242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_15424996_15425726_15425890_15426844_15426977_15427652_15427837_15432926
46338	chr15	+	1955	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	112	4	57	-1	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	1	66	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAGTGCTAGTCATTTA	296	False	NA	NA	False	NA	NA	NA	38662288	38692686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
46340	chr16	-	2104	17	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	8756	-73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.14184307767	1	114	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAAACAGTGCCACCAACT	8695	False	NA	NA	False	NA	NA	NA	3886883	3857907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3858089_3858222_3858296_3861816_3861963_3862482_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720
46341	chr6	+	812	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	187	-534	187	534	mono-exon	FALSE	NA	NA	NA	NA	NA	18	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGATGTGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37783207	37784019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37783200_37784000
46342	chr16	+	2639	14	FSM	ENSMUSG00000035506.17	ENSMUST00000121925.8	2656	14	12	5	12	-3	multi-exon	FALSE	canonical	3	33	junction_5	11.5650974613248	87	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTTTTATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	33337709	33483773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
46343	chr19	+	3287	16	FSM	ENSMUSG00000024817.14	ENSMUST00000025739.14	3536	16	253	-4	177	4	multi-exon	FALSE	canonical	3	216	junction_4	27.709124048868	113	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACGCATCCAGCTTTACTT	4338	False	NA	NA	False	NA	NA	NA	30008165	30071126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_30008332_30016463_30016698_30033634_30033895_30048642_30048862_30051293_30051404_30052483_30052671_30055413_30055538_30055939_30056048_30057238_30057344_30060133_30060241_30063645_30063809_30064575_30064717_30065878_30065976_30066585_30066744_30069440_30069540_30070117
46344	chr4	+	1782	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	1	3377	1	-261	multi-exon	FALSE	canonical	3	62	junction_15	5.48542101848163	9	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTCTCTTTACCTCCA	NA	False	NA	NA	False	NA	NA	NA	132366357	132448699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
46346	chr1	+	4919	5	NNC	ENSMUSG00000086836.2	novel	378	4	NA	NA	-46742	31493	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACAATGGCAGAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	64071070	64161434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_64074922_64081470_64081595_64117863_64118496_64160060_64160299_64161360
46347	chr13	+	3701	16	Antisense	novelGene_ENSMUSG00000102635.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCCCGGGCCCGCCCCTGC	NA	False	NA	NA	False	NA	NA	NA	101820488	101904730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_101821577_101822714_101822880_101823472_101823548_101823636_101823815_101824007_101824151_101825139_101825266_101825485_101825670_101825908_101826005_101826987_101827092_101837954_101838035_101838218_101838421_101839216_101839349_101845427_101845502_101846156_101846251_101893833_101894546_101904482
46348	chr18	+	3288	1	Intergenic	novelGene_4527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAGGTGTTCACTATAAA	NA	False	NA	NA	False	NA	NA	NA	35065219	35068507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_35065200_35068500
46349	chr5	+	1079	1	Antisense	novelGene_ENSMUSG00000040731.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCAGGAGCAGCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	134648730	134649809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_134648700_134649800
46350	chr14	+	1082	9	NIC	ENSMUSG00000022111.10	novel	935	8	NA	NA	-2	-16	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2079.10599402123	5499	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCTACCTGTATTT	115	False	NA	NA	False	NA	NA	NA	101891427	101933544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101923006_101923199_101928007_101928084_101932594_101932654_101933337
46351	chr14	+	2116	3	NNC	ENSMUSG00000101009.7	novel	210	2	NA	NA	409	141	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.5	44	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGCTGCTGCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	76915502	76924750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76915742_76917949_76919350_76924273
46352	chr11	-	881	3	NNC	ENSMUSG00000020738.17	novel	1051	4	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2054.5	6	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTTCTCTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	115427052	115413930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115414551_115425377_115425510_115426923
46354	chr2	+	2900	20	NNC	ENSMUSG00000002455.15	novel	3054	21	NA	NA	29	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	171.616237471834	1	149	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGGGCTTGGGCCTCAC	2577	False	NA	NA	False	NA	NA	NA	181243194	181297454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264115_181273227_181273323_181273723_181273881_181274549_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287379_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181293019_181296628_181296756_181297214
46356	chr11	-	1537	6	NIC	ENSMUSG00000014606.15	novel	1711	8	NA	NA	-318	0	intron_retention	FALSE	canonical	3	687	junction_4	41.5595957631929	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	NA	False	NA	NA	NA	70537054	70535021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901
46358	chr8	+	1741	12	NNC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	-22	-120	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_9	89.2471727912973	8	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAGGAGAGTCAGAGGGAA	NA	False	NA	NA	False	NA	NA	NA	117648446	117668059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663776_117664014_117667182_117667310_117667573
46359	chr6	-	1873	9	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1047.87022097204	1	74	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTATCCCTTTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	88875656	88860461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864853_88874268_88874499_88875626
46360	chr15	-	2248	13	NNC	ENSMUSG00000000555.9	novel	4382	30	NA	NA	-216	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	61.7769284513959	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTGCCCCCACTGACCA	142	False	NA	NA	False	NA	NA	NA	103260021	103252734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_103253780_103254378_103254502_103255007_103255104_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967
46361	chr13	+	1717	15	ISM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	104	12629	5	-1224	5prime_fragment	FALSE	canonical	3	649	junction_6	76.785149499584	2	14	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTAAATAAAGTTGCAAAC	1314	False	NA	NA	False	NA	NA	NA	59733212	59771107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679
46362	chr7	-	1580	4	NIC	ENSMUSG00000090862.4	novel	1150	5	NA	NA	-10	0	intron_retention	FALSE	canonical	3	42	junction_1	4861.61722063759	38	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	115933380	115930744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_115930819_115931613_115933010_115933134_115933184_115933319
46363	chr7	-	3262	20	FSM	ENSMUSG00000030533.17	ENSMUST00000032748.15	3260	20	0	-2	0	-1	multi-exon	FALSE	canonical	3	61	junction_19	11.9833679753749	153	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATCTGTTTGTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	79989967	79975040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79975626_79975760_79975917_79976056_79976175_79977330_79977447_79977665_79977780_79978200_79978268_79978440_79978569_79978769_79978911_79979253_79979396_79980085_79980181_79981300_79981602_79982724_79982897_79983767_79983939_79984442_79984612_79986053_79986222_79986672_79986766_79988588_79988765_79989061_79989099_79989298_79989461_79989816
46365	chr7	+	1050	8	NNC	ENSMUSG00000015165.17	novel	1898	13	NA	NA	213	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2025.10825107485	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	NA	False	NA	NA	NA	28514743	28521674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28514778_28517885_28517946_28518273_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
46366	chr1	-	3757	11	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	5	-651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.763747657559	1	190	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCATTACCAATGTCGGT	8596	False	NA	NA	False	NA	NA	NA	88205350	88190843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88191771_88192106_88194001_88194052_88194246_88194318_88194373_88195665_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
46368	chr1	+	1335	4	FSM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	86	3	-12	-3	multi-exon	FALSE	canonical	3	315	junction_2	2.44948974278318	1801	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGATGTCTTTCCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	79753820	79759159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_79754029_79755574_79756044_79757204_79757384_79758680
46369	chr6	-	2191	13	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-43006	-267	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	109	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGGCCACCGGCACCAC	NA	False	NA	NA	False	NA	NA	NA	71851700	71808335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808524_71823232_71823459_71828753_71828863_71829711_71829840_71830149_71830253_71833895_71834028_71837984_71838089_71839326_71839463_71840122_71840283_71845544_71845786_71848408_71848540_71849774_71849908_71851300
46370	chr1	+	1528	9	NNC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	-1	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	134.706161700198	1	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGCCGAGGCCCTAATGA	8209	False	NA	NA	False	NA	NA	NA	134333756	134339448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134333792_134334050_134334201_134334336_134334406_134334820_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
46371	chr3	-	1580	9	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	-22	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	253.907432689553	8	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATAAAATCCTTAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	131065695	131027093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027747_131027874_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
46372	chr12	-	1943	19	Antisense	novelGene_ENSMUSG00000112391.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	32	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCCGGGAGCGCGCTTG	NA	False	NA	NA	False	NA	NA	NA	78716651	78273493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_78273614_78390123_78390205_78423132_78423190_78501528_78501622_78528069_78528140_78538810_78539082_78540718_78540831_78551389_78551526_78609629_78609673_78637307_78637444_78655916_78656010_78659743_78659799_78670071_78670198_78672907_78672966_78673879_78674033_78684229_78684354_78701580_78701667_78711262_78711336_78716595
46373	chr5	+	1021	6	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	162	-215	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9992.25062535963	10	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCGGTCTGGATTTAT	NA	False	NA	NA	False	NA	NA	NA	115697843	115701571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115699064_115699191_115699309_115699412_115699578_115700484_115700626_115701341
46374	chr10	+	2519	12	NNC	ENSMUSG00000025404.16	novel	3739	23	NA	NA	-9428	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_7	64.0529223338337	1	37	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCACTGGCCATCAGTC	NA	False	NA	NA	False	NA	NA	NA	127307754	127335236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127307870_127312388_127312568_127319844_127320088_127320374_127320502_127320730_127320892_127321284_127321440_127323643_127323745_127328499_127328608_127330889_127331038_127333030_127333129_127333409_127333495_127334237
46377	chr11	+	3752	15	Antisense	novelGene_ENSMUSG00000047804.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	128	14	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGGAGGCCCCGGCCCCG	NA	False	NA	NA	False	NA	NA	NA	61762253	61821075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_61763848_61768132_61768228_61768798_61768856_61777527_61777605_61781058_61781174_61784205_61784378_61787471_61787617_61791133_61791277_61794737_61794856_61795599_61795688_61800674_61800770_61805846_61806412_61806913_61807093_61813607_61813656_61820814
46378	chrX	-	1169	12	NNC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	93	junction_4	704.15816921536	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	72974349	72965728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971446_72971543_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
46379	chr7	-	3165	8	NIC	ENSMUSG00000019082.19	novel	3264	9	NA	NA	8	1	intron_retention	FALSE	canonical	3	72	junction_7	23.6246153191876	3	111	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTGCTTTAAGAGTCT	476	False	NA	NA	False	NA	NA	NA	141017536	141009663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
46380	chr12	-	710	1	FSM	ENSMUSG00000043483.5	ENSMUST00000052882.5	636	1	23	-97	23	97	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATAAAGTTGTGGCTTC	NA	False	NA	NA	False	NA	NA	NA	96889809	96889099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_96889100_96889800
46382	chr14	-	2556	20	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	16	1	intron_retention	FALSE	non_canonical	0	0	junction_2	146.140656262186	9	79	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAAGGAAGCAGCTGTGA	9814	False	NA	NA	False	NA	NA	NA	55873072	55863177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863887_55867136_55867325_55867434_55867547_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872455_55872504_55872588_55872669_55872819_55872907_55872986
46383	chr17	-	1380	10	NNC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	108.451730174201	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCCTTGTCTGCGTCAT	NA	False	NA	NA	False	NA	NA	NA	24382709	24374812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377059_24377295_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
46384	chr13	-	1329	9	NNC	ENSMUSG00000021477.10	novel	6168	9	NA	NA	-1	-585	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	448.115620543404	4	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGGGACTTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	64518121	64511612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64511895_64511952_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
46385	chr9	+	3784	14	NNC	ENSMUSG00000032308.10	novel	2826	16	NA	NA	49	-8	intron_retention	FALSE	non_canonical	0	0	junction_13	17.5165179863711	26	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTTATGCATTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	57496783	57503508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57496970_57497606_57497748_57497943_57498602_57499276_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501227_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225_57503175_57503226
46387	chr10	-	2334	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	70	2	19	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	1	109	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGTAGAGTGAATCTCT	8318	False	NA	NA	False	NA	NA	NA	128540829	128533814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
46389	chr7	-	2800	4	Intergenic	novelGene_3043	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTTTTTTTTTTTAA	8890	False	NA	NA	False	NA	NA	NA	130989561	130973577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_130975991_130985651_130985728_130986226_130986321_130989344
46391	chr8	-	1564	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	38.0914688611505	183	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTATATGTGCCGATT	NA	False	NA	NA	False	NA	NA	NA	57003911	56984558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003722
46393	chr17	+	2283	14	NIC	ENSMUSG00000024312.11	novel	2229	15	NA	NA	17	-7	intron_retention	FALSE	canonical	3	240	junction_7	26.0484300881871	249	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGACGTGTCTGGACCA	1996	False	NA	NA	False	NA	NA	NA	34159650	34168664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
46394	chr19	-	2604	12	NNC	ENSMUSG00000024816.13	novel	4504	11	NA	NA	-9	-1584	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	60.9968160664795	12	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTCTTTCCTATCACTG	4361	False	NA	NA	False	NA	NA	NA	5925276	5901313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5902414_5902703_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
46396	chr18	+	2936	6	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15032	896	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	100.192614498275	1	53	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTGAATGAAAACGTTCT	NA	False	NA	NA	False	NA	NA	NA	82990900	83020721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_82990971_83004868_83005682_83005782_83006324_83011194_83011315_83012594_83012663_83019397
46397	chr16	-	3571	6	FSM	ENSMUSG00000050312.13	ENSMUST00000143314.8	3565	6	-6	0	-6	0	multi-exon	TRUE	canonical	3	19	junction_4	5.49181208709839	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	NA	NA	NA	62607146	62552806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596747_62606150_62606261_62607033
46401	chr4	+	2235	11	NNC	ENSMUSG00000029068.17	novel	2442	11	NA	NA	-2	58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	312.668978314127	254	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGCTGTCATTCTGGT	4653	False	NA	NA	False	NA	NA	NA	155896973	155908818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906265_155906378_155906461_155906555_155907799
46403	chr17	+	3596	25	Antisense	novelGene_ENSMUSG00000002496.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	83	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCGAGTCAGCCCGCAGT	NA	False	NA	93	True	NA	NA	NA	24815538	24833724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24815741_24815828_24815928_24816019_24816114_24816180_24816257_24816864_24817008_24817159_24817347_24818000_24818086_24818253_24818334_24818534_24819022_24819308_24819440_24820362_24820432_24821067_24821268_24822056_24822273_24823278_24823393_24823479_24823631_24823799_24823967_24825197_24825325_24826401_24826511_24826677_24826779_24827071_24827165_24827920_24828108_24829410_24829548_24832164_24832287_24833324_24833479_24833659
46404	chr10	-	1218	7	ISM	ENSMUSG00000006342.16	ENSMUST00000077610.6	2275	13	3387	854	3387	-854	internal_fragment	FALSE	canonical	3	52	junction_3	6.82519840981442	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATCCTTGATGTGATGAG	NA	False	NA	NA	False	NA	NA	NA	75476427	75473898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289
46405	chr1	-	3305	15	NNC	ENSMUSG00000073656.5	novel	1661	3	NA	NA	-111560	146954	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGCCGAGAGCCCGCG	NA	False	NA	NA	False	NA	NA	NA	66479515	66214480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_66214652_66232274_66232341_66290820_66290870_66361560_66361626_66401359_66401439_66419646_66419929_66438543_66438658_66440596_66440679_66459291_66459356_66460804_66460948_66464350_66464686_66470683_66470777_66472670_66472753_66477410_66477524_66477948
46406	chrX	+	2485	4	NNC	ENSMUSG00000031197.12	novel	632	5	NA	NA	3	1396	intron_retention	FALSE	non_canonical	0	0	junction_3	890.035704652097	13	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACCTAGCTAAATACAGGA	NA	False	NA	NA	False	NA	NA	NA	74557925	74569048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560820_74564968_74565036_74566864
46409	chr8	-	3118	15	FSM	ENSMUSG00000031605.9	ENSMUST00000034017.9	3412	15	289	5	196	-5	multi-exon	FALSE	canonical	1	64	junction_10	38.1758150815782	117	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATAACACTGGGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	65302380	65192713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_65194009_65195988_65196133_65202065_65202207_65202728_65202858_65204762_65204865_65205682_65205881_65207318_65207437_65211125_65211276_65212766_65212884_65217156_65217267_65232731_65232895_65264331_65264454_65275642_65275750_65287094_65287221_65302284
46410	chr13	+	2005	8	FSM	ENSMUSG00000021483.9	ENSMUST00000021939.8	4118	8	58	2055	17	-2	multi-exon	TRUE	canonical	3	37	junction_1	3.65892813567591	124	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCAGCTTGTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	64580185	64587532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64584429_64584579_64584643_64585202_64585327_64585690_64585847_64586594
46411	chr5	+	2491	7	ISM	ENSMUSG00000029501.15	ENSMUST00000197188.5	4077	13	12659	817	6142	-817	3prime_fragment	FALSE	canonical	3	209	junction_3	28.6278807381119	1	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGTTCTGAGTATAATT	NA	False	NA	NA	False	NA	NA	NA	110391528	110402518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_110392437_110397196_110397367_110398566_110398674_110399362_110399554_110400577_110401209_110401648_110401781_110402166
46412	chr19	-	1181	2	FSM	ENSMUSG00000025204.11	ENSMUST00000164543.2	341	2	-850	10	-850	-10	multi-exon	FALSE	canonical	3	4404	junction_1	0	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAATAAAGCTCAGTGCTC	3684	False	NA	NA	False	NA	NA	NA	44542169	44538703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44538852_44541136
46413	chr11	+	2144	7	NIC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	10	junction_1	238.594961295404	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68936482	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68936835_68938551_68938714_68938797_68938868_68938999_68939471_68939556_68939706_68941127_68941303_68941725
46414	chr2	-	3022	11	Antisense	novelGene_ENSMUSG00000026977.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	91	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCGGATGCGCCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	60079544	60040290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_60040427_60059259_60059424_60060024_60060218_60062537_60062712_60064242_60065340_60067095_60067268_60071283_60071397_60073900_60074015_60075555_60075621_60078231_60078701_60079219
46415	chr13	+	2335	13	NIC	ENSMUSG00000039242.11	novel	2439	13	NA	NA	3	-15	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	55.6334107249312	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTTTAGAATAAACTAGC	NA	False	NA	NA	False	NA	NA	NA	14129241	14173644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171610_14172963
46417	chr18	-	2407	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	63	28	-55	-28	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTGTAATAAACTTAACAA	NA	False	NA	NA	False	NA	NA	NA	24254947	24237841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
46418	chr9	+	1134	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8310.20565987238	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082545_64083408_64083516_64084285_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
46419	chr12	+	1535	5	NNC	ENSMUSG00000020629.13	novel	1652	4	NA	NA	62	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	141.947173272313	271	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAAACTTGGTCTCTCG	NA	False	NA	NA	False	NA	NA	NA	28725291	28732166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964_28731856_28731902
46420	chr10	+	2443	16	NNC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	55.5087981014421	1	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGACTCAGTCACAGAAT	5399	False	NA	NA	False	NA	NA	NA	78410333	78420317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412980_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
46421	chr17	-	3481	5	FSM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	394	17	221	-6	multi-exon	FALSE	canonical	3	33	junction_4	5.43139024560011	327	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACCCCGCCTTTATCC	NA	False	NA	NA	False	NA	NA	NA	28039205	27970225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27972970_27986884_27987214_28005044_28005243_28012882_28013038_28039150
46422	chr19	+	2430	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	114.328960071852	1	87	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTTTTACTGTGTCTAG	NA	False	NA	NA	False	NA	NA	NA	38043484	38062862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38043530_38045857_38045926_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
46423	chr10	+	4589	21	FSM	ENSMUSG00000020021.5	ENSMUST00000020208.5	8044	21	110	3345	110	2123	multi-exon	FALSE	canonical	3	10	junction_10	4.04474968323134	39	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGGTCATAACTGTTT	NA	False	NA	NA	False	NA	NA	NA	93871972	93977856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93872173_93879163_93881496_93910044_93910193_93925438_93925507_93925593_93925625_93936263_93936416_93939103_93939261_93941846_93941935_93956314_93956366_93959100_93959160_93959405_93959478_93960751_93960821_93961410_93961495_93963230_93963311_93969141_93969245_93969862_93970007_93970878_93970982_93973297_93973426_93974145_93974275_93975600_93975750_93977614
46424	chr10	-	2935	12	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	-12	0	intron_retention	FALSE	canonical	3	107	junction_3	18.2630005771955	3	76	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5737	False	NA	NA	False	NA	NA	NA	4382313	4353170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
46427	chr17	-	1833	1	Intergenic	novelGene_20	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCACCTTGATGATAATG	NA	False	NA	NA	False	NA	NA	NA	15730229	15728396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_15728400_15730200
46428	chr17	-	2497	14	NIC	ENSMUSG00000024137.10	novel	2552	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	26.3685755236784	120	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGTTGTGATTGGG	NA	False	NA	NA	False	NA	NA	NA	24674301	24662755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665816_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
46429	chr19	+	3272	5	Antisense	novelGene_ENSMUSG00000024764.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	140	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGCGACAGCGAAGCGGCC	NA	False	NA	NA	False	NA	NA	NA	7203960	7218386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_7205455_7205714_7205792_7207085_7207647_7211466_7212524_7218303
46430	chr8	-	3255	7	NNC	ENSMUSG00000014837.16	novel	3492	7	NA	NA	30	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.8033404638578	78	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGTTACAATGATGTGT	NA	False	NA	NA	False	NA	NA	NA	106016106	106007055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012670_106016035
46433	chr11	+	1915	16	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	694	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	263.549025588957	1	84	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	NA	False	NA	NA	NA	115456044	115474732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115456074_115457426_115457623_115460487_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
46434	chr15	+	2410	9	FSM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	86	6	2	-5	multi-exon	FALSE	canonical	3	44	junction_1	24.1761116600664	171	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTCTGGGAATTA	2421	False	NA	NA	False	NA	NA	NA	100366989	100377039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100367127_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
46435	chr4	-	2429	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	68	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	462.517312608739	1	124	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137523627	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486028_137523552
46437	chr4	+	3309	2	Genic_Genomic	ENSMUSG00000081593.2	novel	1963	1	NA	NA	-11882	447	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCCCCCCCCCGAAACT	47	False	NA	NA	False	NA	NA	NA	12113407	12127699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12113540_12124522
46439	chr14	+	1132	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	77	304	-11	-54	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCCTTGTTGGGACTTC	NA	False	NA	NA	False	NA	NA	NA	14296824	14303473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
46440	chr4	+	1835	1	NIC	ENSMUSG00000028710.19	novel	896	7	NA	NA	12084	7	mono-exon	FALSE	NA	NA	NA	NA	NA	60	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTCTTATTGACTT	NA	False	NA	NA	False	NA	NA	NA	115669664	115671499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_115669700_115671500
46442	chr15	-	1888	1	NIC	ENSMUSG00000116461.2	novel	4296	27	NA	NA	447	-10957	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACGGGAAGAAGAATT	1830	False	NA	NA	False	NA	NA	NA	89313452	89311564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89311600_89313500
46445	chr11	+	1930	12	NNC	ENSMUSG00000001100.11	novel	2054	11	NA	NA	69	-13	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	334.92816548188	1212	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTTCTAGTCCTTCTGA	1704	False	NA	NA	False	NA	NA	NA	78403087	78413549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78403229_78403270_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
46446	chr6	-	2525	13	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTGCTGTTGTTGCAT	NA	False	NA	NA	False	NA	NA	NA	37943083	37908338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37908433_37920343_37920466_37922457_37922723_37926154_37926331_37928381_37928547_37930426_37930564_37933337_37933409_37933936_37934108_37934443_37934771_37935494_37935638_37937731_37937789_37941640_37941788_37942433
46448	chr3	-	2572	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	0	0	intron_retention	TRUE	canonical	3	20	junction_4	10.0249688278817	46	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGCTGGAGTCTGTC	7128	False	NA	NA	False	NA	NA	NA	88280050	88275926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88278787_88279845
46450	chr14	+	1417	9	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	50	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	530.691471101619	11	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTAATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	8348879	8357578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8356613_8356756_8357159_8357238_8357376
46452	chr11	+	2144	14	NNC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	148.623665958152	1	100	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50268591	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273507_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
46453	chr6	-	2932	14	NNC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	7	-960	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	262.717005258645	2	170	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAGCAAACTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	148113598	148081536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089621_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
46454	chr13	-	1860	8	NNC	ENSMUSG00000021477.10	novel	1971	8	NA	NA	-53	-582	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	463.663275074769	5	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGACTTCAGTGTGTAA	NA	False	NA	NA	False	NA	NA	NA	64518173	64511609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516313_64516683_64516979_64518049
46456	chr7	-	3492	11	NIC	ENSMUSG00000019734.17	novel	2204	14	NA	NA	22	-2	intron_retention	FALSE	canonical	3	10	junction_7	10.7	4	102	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTTTGCGTTTTGAAACC	6180	False	NA	NA	False	NA	NA	NA	3679770	3668791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3669008_3669100_3669180_3669817_3670178_3670439_3670624_3672572_3672671_3672913_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678571_3679562
46459	chr11	+	4094	5	FSM	ENSMUSG00000072915.4	ENSMUST00000139337.3	4100	5	7	-1	7	1	multi-exon	FALSE	canonical	2	9	junction_4	6.04152298679729	32	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCCGAGTGGGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	58737990	58752783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58738086_58739471_58739529_58745085_58745213_58746886_58746980_58749061
46460	chr5	+	2105	17	NNC	ENSMUSG00000038828.14	novel	6110	17	NA	NA	76	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	98.5183794718021	25	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTAGCTTTCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	31027054	31034806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033779_31034521
46461	chr2	-	2148	8	NIC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	2975	-4	intron_retention	FALSE	canonical	3	78	junction_6	8.24126005820341	2	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCCAGCTCCAGGCCT	NA	False	NA	NA	False	NA	NA	NA	93692186	93685715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118
46462	chr18	+	1735	15	NIC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	-1	-427	intron_retention	FALSE	canonical	3	693	junction_8	55.3216937188149	2	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATGATCAAAGCTTAAAAG	9	True	NA	NA	False	NA	NA	NA	9958175	9987728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986762_9987069_9987166_9987598
46463	chr1	-	3124	1	FSM	ENSMUSG00000081402.5	ENSMUST00000117459.3	2557	1	-368	-199	-368	199	mono-exon	FALSE	NA	NA	NA	NA	NA	1	131	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGTATAAG	9467	False	NA	NA	False	NA	NA	NA	33878129	33875005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_33875000_33878100
46465	chr13	-	3437	11	FSM	ENSMUSG00000005312.16	ENSMUST00000058735.12	3686	11	231	18	197	-11	multi-exon	FALSE	canonical	3	817	junction_3	227.671803260746	366	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGCTTTTACACTTGGT	1958	False	NA	NA	False	NA	NA	NA	58363236	58323987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58328635_58328720_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
46466	chr9	-	2035	21	NIC	ENSMUSG00000058444.9	novel	2310	22	NA	NA	179	-3	combination_of_known_splicesites	FALSE	canonical	3	8	junction_19	18.5973116336744	154	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGCGTTTGTCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	63284980	63071052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63279018_63279068_63284404
46467	chr10	-	2322	17	NNC	ENSMUSG00000020124.11	novel	2603	17	NA	NA	6	-226	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	188.240859256831	1	93	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCTGGTAAGAGCCGGAC	NA	False	NA	NA	False	NA	NA	NA	123032852	122960425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966878_122967071_122967156_122967316_122968863_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
46468	chr14	+	3129	14	NNC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	10	-4	intron_retention	FALSE	canonical	1	2	junction_6	50.8766927956455	1	110	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACTGGCTCTGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	55798000	55807514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802275_55802380_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
46469	chr8	+	2095	12	Intergenic	novelGene_1568	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1121	5	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTCCTGCGTCGCTCAT	NA	False	NA	NA	False	NA	NA	NA	4309718	4325904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_4310258_4310512_4310623_4311907_4311998_4315225_4315276_4316554_4316688_4316773_4316862_4317253_4317777_4317862_4318014_4318299_4318381_4319854_4320030_4324139_4324233_4325842
46471	chr2	-	1945	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	57	24	-5	-24	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	1	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTGTGGTTTGATATGT	NA	False	NA	NA	False	NA	NA	NA	152185895	152179365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
46472	chr7	-	1332	8	NIC	ENSMUSG00000001794.14	novel	1241	9	NA	NA	-10	-5	intron_retention	FALSE	canonical	3	1474	junction_6	87.7540626421597	1182	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTATAGAGTAACTTGGT	NA	False	NA	NA	False	NA	NA	NA	29892407	29886372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891803_29891927_29892018_29892291
46473	chr3	-	2059	7	FSM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	27	13	27	-13	multi-exon	FALSE	canonical	3	312	junction_5	35.6401770789964	311	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATGCTGCCTACAAGGTG	2326	False	NA	NA	False	NA	NA	NA	87792888	87766222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889_87777457_87779516_87779565_87792181
46475	chr1	-	1673	14	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTCCTTCTCTAAGAAT	NA	False	NA	NA	False	NA	NA	NA	59750656	59724146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729722_59731495_59731549_59735138_59735251_59737473_59737616_59740040_59740109_59741969_59742107_59743226_59743366_59743777_59743908_59744749_59744817_59746176_59746215_59748212_59748300_59749654_59749812_59750429
46476	chr4	+	2256	1	NIC	ENSMUSG00000066152.12	novel	1820	4	NA	NA	4606	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTTGTTGGTCCGT	6352	False	NA	NA	False	NA	NA	NA	62214389	62216645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_62214400_62216600
46477	chr5	+	1334	12	NNC	ENSMUSG00000028932.9	novel	1775	13	NA	NA	1512	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	524.930613281728	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTAAAAACTGTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	21991792	22008770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004497_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
46478	chr3	-	3350	17	Antisense	novelGene_ENSMUSG00000083045.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.242061459137964	1	138	10	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGTAGCTAGGACCTGC	NA	False	NA	NA	False	NA	NA	NA	135276996	135191515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_135191617_135212667_135212760_135216730_135216842_135217563_135217733_135223661_135223790_135228751_135228930_135230280_135230387_135248070_135248245_135250503_135250603_135253308_135253391_135254953_135255129_135256823_135257015_135260509_135260681_135268961_135269121_135272253_135272400_135273234_135273477_135275970
46479	chr4	+	2320	13	FSM	ENSMUSG00000034401.17	ENSMUST00000084354.4	2239	13	-150	69	-4	-19	multi-exon	FALSE	canonical	3	19	junction_11	28.7691964897643	14	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAGAATTATATTGT	NA	False	NA	NA	False	NA	NA	NA	111577251	111686312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663180_111679937_111680030_111685382
46480	chr3	-	2812	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	9	-152	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	17	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGTCTTTCCTGAATTCT	NA	False	NA	NA	False	NA	NA	NA	97517499	97468209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
46481	chr8	+	2122	11	NNC	ENSMUSG00000002342.18	novel	2093	11	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	64.8709488137795	366	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAATGCTGCCTTACCAT	7763	False	NA	NA	False	NA	NA	NA	70626951	70635496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70627057_70629494_70629576_70629890_70629989_70630127_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
46482	chr11	+	1498	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	8	7	8	-7	multi-exon	TRUE	canonical	0	0	junction_3	92.1316449435263	1019	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTTGGCATGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	71933288	71938189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
46484	chr9	+	1882	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	6	5	6	-1	multi-exon	FALSE	canonical	3	208	junction_3	7.31816613336672	572	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGCTTCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	107446321	107449970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
46485	chr3	-	1836	12	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	282.273063972863	1	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	152	False	NA	NA	False	NA	NA	NA	153650109	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628589_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
46486	chr11	+	1139	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	18	-38	multi-exon	FALSE	non_canonical	0	0	junction_2	980	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCTGGACAGTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653637	120655207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120653918_120654315
46487	chr6	+	2485	2	ISM	ENSMUSG00000041671.14	ENSMUST00000123289.2	914	8	1674	4007	1674	-1178	internal_fragment	FALSE	canonical	3	62	junction_1	0	4	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAACACAGGAATTTCAG	NA	False	NA	NA	False	NA	NA	NA	142294335	142299239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_142294369_142296787
46488	chr17	+	3636	8	Antisense	novelGene_ENSMUSG00000024070.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAACTGCCTAGTCAGTG	NA	False	NA	NA	False	NA	NA	NA	79256853	79269269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_79259459_79260104_79260192_79261902_79262167_79263946_79264052_79264572_79264733_79266460_79266570_79268541_79268610_79269031
46489	chr15	+	2747	13	FSM	ENSMUSG00000078932.9	ENSMUST00000190436.7	2041	13	7	-713	7	713	multi-exon	FALSE	canonical	2	14	junction_9	6.39172642301489	53	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTACTTTATTTCTCTTGA	NA	False	NA	NA	False	NA	NA	NA	91083703	91145810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91124845_91125023_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
46492	chr18	+	2036	4	NNC	ENSMUSG00000063281.10	novel	3040	3	NA	NA	20	-650	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	70.6933911731186	1	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGTCTGTCTCTTGCAT	1079	False	NA	NA	False	NA	NA	NA	24122708	24137783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_24122789_24123234_24123448_24135706_24136533_24136866
46493	chr11	-	2246	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	62	13	10	-13	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	5	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTATCTGTAAAGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	121245209	121218062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
46494	chr12	-	1483	11	Intergenic	novelGene_4475	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACAAACTGAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	110537347	110452220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_110452385_110488922_110489124_110510507_110510618_110512026_110512120_110512202_110512334_110519216_110519325_110521273_110521331_110527731_110527896_110534154_110534290_110535387_110535490_110537129
46497	chr10	-	1729	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	210	1	210	-1	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGATGTGTGCAGGTTTT	NA	False	NA	NA	False	NA	NA	NA	5755390	5749160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
46498	chr15	-	3776	3	NNC	ENSMUSG00000116295.2	novel	593	4	NA	NA	9796	4040	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	14	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACAACAACAACAACCCCC	646	False	NA	NA	False	NA	NA	NA	97055307	97050869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97052507_97052643_97054549_97055073
46499	chr5	-	1935	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	194	4	97	1	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	415	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTATAGTCATCAT	NA	False	NA	NA	False	NA	NA	NA	21990055	21962268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
46500	chr15	-	3461	17	Antisense	novelGene_ENSMUSG00000092495.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCACGCCCGTGACGTCA	NA	False	NA	NA	False	NA	NA	NA	65729769	65658886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_65659096_65687183_65687261_65690281_65690406_65691564_65691720_65696462_65696585_65701575_65701723_65709280_65709422_65714488_65714568_65717755_65717892_65719994_65720160_65721613_65721726_65722971_65723024_65724808_65724981_65725377_65725454_65726475_65726634_65727259_65727395_65728368
46501	chrX	+	4661	19	ISM	ENSMUSG00000042473.9	ENSMUST00000096313.4	5094	21	19620	-7	19620	7	3prime_fragment	FALSE	canonical	0	0	junction_4	1.62920869984613	6	57	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGATAGCATTGTAAATGTA	NA	False	NA	NA	False	NA	NA	NA	138605364	138654161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_138605470_138606704_138606931_138607865_138608107_138613002_138613211_138614003_138614169_138624651_138624802_138625826_138625978_138626412_138626628_138633006_138633125_138634703_138634990_138637037_138637168_138637702_138637802_138642675_138642745_138642900_138643142_138644104_138644171_138645956_138646041_138647099_138647157_138650696_138650795_138652209
46502	chrX	+	654	1	Intergenic	novelGene_4062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGTTTACTAAAAGGCCAA	NA	False	NA	NA	False	NA	NA	NA	138654314	138654968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_138654300_138655000
46503	chr7	+	2451	1	NIC	ENSMUSG00000006333.15	novel	751	5	NA	NA	8	-74	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	142	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGGGCGGGGCTGGAGC	1604	False	NA	NA	False	NA	NA	NA	3707331	3709782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707300_3709800
46504	chr4	-	1641	9	FSM	ENSMUSG00000051517.15	ENSMUST00000054538.13	1659	9	4	14	4	-8	multi-exon	FALSE	canonical	3	105	junction_3	13.833270582187	132	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTTGCAAAAGCCTTC	9055	False	NA	NA	False	NA	NA	NA	43499691	43496155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43496721_43496820_43496910_43497086_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
46506	chr12	-	1531	5	NNC	ENSMUSG00000021276.11	novel	2029	5	NA	NA	14	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.919442037151	15	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATATTAATCCTGTTGAG	8448	False	NA	NA	False	NA	NA	NA	110850480	110839593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110840564_110840646_110840791_110843274_110843405_110846118_110846249_110850323
46507	chr14	+	2799	2	ISM	ENSMUSG00000035067.10	ENSMUST00000176510.2	4315	3	52134	2917	-348	168	3prime_fragment	FALSE	canonical	3	15	junction_1	0	1	67	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCTAAAACAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	63896257	63900714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_63898376_63900033
46508	chr14	+	2765	1	ISM	ENSMUSG00000035067.10	ENSMUST00000176510.2	4315	3	56712	31	4230	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	20	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAATGGCCCAATTAT	1069	False	NA	NA	False	NA	NA	NA	63900835	63903600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_63900800_63903600
46509	chr12	+	2963	12	FSM	ENSMUSG00000021065.17	ENSMUST00000171770.10	2765	12	-91	-107	-68	0	multi-exon	FALSE	canonical	3	35	junction_1	20.7412233753807	115	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGAAGTTTCTGGAAT	NA	False	NA	NA	False	NA	NA	NA	77284830	77522763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_77284974_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
46510	chr1	-	1501	11	NNC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	-22	-218	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	519.217189622994	192	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCCCCTCCTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	92401511	92367218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390671_92390711_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
46511	chr2	+	1583	8	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	18189	1014	-1869	975	3prime_fragment	FALSE	canonical	3	2736	junction_2	181.124942782487	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	NA	NA	NA	162914795	162925594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
46512	chr8	-	1815	2	Intergenic	novelGene_1676	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATCCTCCTCTGCACCT	NA	False	NA	NA	False	NA	NA	NA	81628168	81624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_81625898_81627428
46513	chr7	+	2900	8	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	2	255	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	143.770508741096	1	142	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGATAAAATGTGTAAGTG	NA	False	NA	NA	False	NA	NA	NA	12568965	12584107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12569094_12569383_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582331
46514	chr17	+	2703	8	ISM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	74	8892	28	-8892	5prime_fragment	FALSE	canonical	2	12	junction_2	13.1024222717693	12	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTGAATAAAGAACTCTT	NA	False	NA	NA	False	NA	NA	NA	15616537	15644808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_15616823_15622006_15623392_15626016_15626198_15627858_15627961_15634940_15635114_15637894_15637988_15643139_15643347_15644531
46515	chr2	+	3582	9	NNC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	6	-7845	intron_retention	FALSE	canonical	3	31	junction_7	83.3992655842964	5	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACTAAGAACTGTTTGACT	5687	False	NA	NA	False	NA	NA	NA	22785612	22822409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805541_22819551_22819633_22819755
46516	chr2	-	2527	1	Antisense	novelGene_ENSMUSG00000001403.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCGCGTTTGAATTGCAA	NA	False	NA	NA	False	NA	NA	NA	164614360	164611833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_164611800_164614400
46517	chr9	+	735	6	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	1593	0	868	5prime_fragment	FALSE	canonical	3	16882	junction_3	1438.98567053324	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTTGCACGTGGTTTAA	NA	False	NA	NA	False	NA	NA	NA	64080656	64084355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222
46518	chr17	+	2416	13	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	778	1614	intron_retention	FALSE	canonical	0	0	junction_3	70.0148297783326	1	100	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGGGGTTCCTGTTGCCC	NA	False	NA	NA	False	NA	NA	NA	45818544	45828866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818637_45819406_45819553_45819790_45819959_45820323_45820467_45825417_45825564_45825848_45826210_45826325_45826438_45826870_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837
46522	chr18	+	2218	7	NNC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	210.562738077435	1	104	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTGGATGTGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	21134960	21160577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21143733_21143850_21148712_21148785_21150881_21150933_21153944_21154057_21159142
46523	chr10	-	2373	6	Antisense	novelGene_ENSMUSG00000061759.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGTTCCAGAAAGGAAGCG	4834	False	NA	NA	False	NA	NA	NA	4405140	4382619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_4382699_4384823_4384932_4389489_4389735_4398306_4398421_4400644_4400809_4403477
46524	chr12	+	1730	11	NNC	ENSMUSG00000059060.16	novel	1858	11	NA	NA	2986	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	25.5321366125125	3	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACCGGGGTCTCCAAAG	NA	False	NA	NA	False	NA	NA	NA	79347322	79861147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994_79374179_79536851_79537099_79704597_79704695_79813844_79813949_79849963_79850043_79860715
46525	chr4	+	2145	5	NIC	ENSMUSG00000028837.9	novel	859	6	NA	NA	-12	-10	intron_retention	FALSE	canonical	3	3349	junction_3	116.02370447456	19	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAATTGATCTTTCTGGG	5417	False	NA	NA	False	NA	NA	NA	126571459	126603497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126601397_126603271
46526	chr8	-	1465	10	NIC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	9	1	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	154.696676526663	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGTGTGATGCGTTTGT	621	False	NA	NA	False	NA	NA	NA	71725095	71703767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
46527	chr5	+	1696	2	ISM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	0	0	0	0	intron_retention	FALSE	canonical	3	589	junction_1	0	1216	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	NA	False	NA	NA	NA	135038559	135041024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135038972_135039740
46528	chr7	-	2762	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	705	2301	11	369	multi-exon	FALSE	canonical	3	42	junction_2	4	97	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCTTACTAGAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	127475295	127464519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127466536_127466927_127467597_127475218
46530	chr18	+	605	7	NNC	ENSMUSG00000024614.8	novel	1776	11	NA	NA	32	5215	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	82.1374187295629	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTAATATTTGATTTAA	4892	False	NA	NA	False	NA	NA	NA	90528427	90542485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90541568_90541754_90542404
46532	chr11	-	1112	6	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-40	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8488.43133682543	2	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCAGTTGTTTATTTGT	6427	False	NA	NA	False	NA	NA	NA	69812056	69807540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808765_69809973_69810163_69811988
46533	chr11	+	1503	11	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	21	58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	855.33425629984	1	52	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTGTATATGTTGTT	NA	False	NA	NA	False	NA	NA	NA	107370330	107388617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379791_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
46534	chr19	-	1355	9	ISM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	10731	4	10731	-4	3prime_fragment	FALSE	canonical	3	3068	junction_6	205.380401633165	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTACGGTCTCCAGTGA	7577	False	NA	NA	False	NA	NA	NA	7006604	6998073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475
46539	chr2	+	1478	12	ISM	ENSMUSG00000026790.20	ENSMUST00000113767.8	2249	16	92	7222	1	3	5prime_fragment	FALSE	canonical	3	233	junction_2	314.357379400375	1	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTCTTTGTGTTCAGAG	7220	False	NA	NA	False	NA	NA	NA	29779823	29805329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219
46541	chr18	+	3002	16	FSM	ENSMUSG00000024561.12	ENSMUST00000224047.2	2838	16	-120	-44	-4	-3	multi-exon	FALSE	canonical	3	24	junction_11	21.6794833886788	57	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAGCATAAGGTTGCC	NA	False	NA	NA	False	NA	NA	NA	74401241	74415800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
46542	chr7	-	3761	6	NIC	ENSMUSG00000070822.6	novel	3626	6	NA	NA	19	-9	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	14.3749782608531	2	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTCATATTATGCCTC	NA	False	NA	NA	False	NA	NA	NA	12509566	12502027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12507876
46543	chr16	+	1656	7	NNC	ENSMUSG00000022744.13	novel	1540	6	NA	NA	-13	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	193.103958760272	56	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAGTGTCTAAATTGTT	NA	False	NA	NA	False	NA	NA	NA	58548372	58554599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_58548448_58549520_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201_58553966_58554407
46545	chr11	+	1866	7	Antisense	novelGene_ENSMUSG00000017677.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACGTGCTCAGGAGGCTT	NA	False	NA	NA	False	NA	NA	NA	79130215	79139383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_79131295_79131517_79131622_79132420_79132534_79132808_79132981_79135286_79135388_79136997_79137127_79139215
46546	chr17	-	2345	1	NIC	ENSMUSG00000040048.15	novel	834	3	NA	NA	8	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	59	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	NA	NA	NA	24943378	24941033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24941000_24943400
46547	chr9	-	2810	3	ISM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	-11	0	-11	0	intron_retention	FALSE	canonical	3	1106	junction_1	54	127	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	6320	False	NA	NA	False	NA	NA	NA	57065572	57062318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_57062565_57062695_57062873_57063185
46550	chr16	+	3870	13	FSM	ENSMUSG00000022807.10	ENSMUST00000039733.10	4521	13	651	0	651	0	multi-exon	FALSE	canonical	3	140	junction_5	9.04118662320138	79	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGGCGTCTCTTTCATA	NA	False	NA	NA	False	NA	NA	NA	33006091	33063682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_33006371_33016443_33016513_33025041_33025218_33026292_33026373_33030295_33030473_33034711_33034914_33037083_33037230_33044909_33045051_33047226_33047726_33049331_33049519_33054792_33054976_33056624_33056779_33062105
46551	chr5	-	1419	3	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	42	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	839	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGATCAGCCCGGAGAG	NA	False	NA	NA	False	NA	NA	NA	36954074	36952262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36953289_36953546_36953629_36953763
46552	chr15	+	3512	23	NNC	ENSMUSG00000023007.16	novel	2619	25	NA	NA	-10	-11	intron_retention	FALSE	non_canonical	0	0	junction_5	46.6900276042535	6	102	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTATAACATGATCTAC	NA	False	NA	NA	False	NA	NA	NA	99193109	99214877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203098_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207917_99212458_99212576_99212723_99213168_99213363_99213451_99213603_99213782_99213967_99214030_99214123_99214262_99214341
46553	chr19	-	1338	10	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	76.3254888416287	16	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	9963	False	NA	NA	False	NA	NA	NA	6117870	6112851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116594_6116997_6117053_6117152_6117350_6117698
46554	chr16	-	1515	14	NNC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	-5	-4353	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	212.293477785021	1	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGTCTCTGCCCAGTG	NA	False	NA	NA	False	NA	NA	NA	18630381	18603555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614580_18614695_18616098_18616150_18617425_18617509_18624146_18624188_18626029_18626174_18627481_18627635_18630264
46555	chr2	-	2377	7	FSM	ENSMUSG00000027490.18	ENSMUST00000000894.6	2755	7	356	22	356	-22	multi-exon	FALSE	canonical	0	0	junction_3	459.079392794851	284	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAATGTTTTGATGGTG	9985	False	NA	NA	False	NA	NA	NA	154411284	154401575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154410986
46556	chr17	-	2345	6	NNC	ENSMUSG00000015120.16	novel	824	7	NA	NA	-28	1395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1930.7108121104	2	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACTGCAGCCCTCGGG	4719	False	NA	NA	False	NA	NA	NA	25492385	25479494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488233_25492341
46557	chrX	+	1915	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	61	2526	43	-1753	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATAATGACGTCTGCAT	NA	False	NA	NA	False	NA	NA	NA	132960006	132985042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
46558	chr7	-	1805	3	ISM	ENSMUSG00000002968.10	ENSMUST00000208253.2	3693	18	11968	71	885	-71	3prime_fragment	FALSE	canonical	3	62	junction_1	458	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTATCATCCGTGTTTGT	4458	False	NA	NA	False	NA	NA	NA	44529847	44526259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44527715_44529350_44529529_44529675
46559	chr2	-	2961	14	NNC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-1990	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	54.4814174932243	1	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACCCTTGCACTTTTACA	2460	False	NA	NA	False	NA	NA	NA	12417005	12352077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12387003_12400935_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12416063
46561	chr14	+	560	5	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2715.13590820055	3	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082780_76083064_76083131_76083642_76083834_76084706_76084801_76085538
46563	chr5	+	1681	10	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	20	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	247.856489739875	27	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTTATTTTTTTTAAC	NA	False	NA	NA	False	NA	NA	NA	64250312	64285698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265091_64285141
46566	chr8	-	2851	17	NNC	ENSMUSG00000031755.7	novel	3064	17	NA	NA	526	-4	intron_retention	FALSE	canonical	1	1	junction_6	9.63858619041195	3	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGTTGTTGTTTATA	NA	False	NA	NA	False	NA	NA	NA	94825030	94794585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94805227_94805327_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
46568	chr3	+	1653	1	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	631	640	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTCATCTTTCTCTG	1490	False	NA	NA	False	NA	NA	NA	105872395	105874048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105872400_105874000
46569	chr7	-	1998	1	FSM	ENSMUSG00000108528.2	ENSMUST00000205708.2	641	1	-483	-874	-483	874	mono-exon	FALSE	NA	NA	NA	NA	NA	31	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAATAAATGAAGGTGG	NA	False	NA	NA	False	NA	NA	NA	95853226	95851228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_95851200_95853200
46570	chr8	-	1492	5	Antisense	novelGene_ENSMUSG00000005413.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	258	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCGAGACGGCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	75827218	75820326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_75820399_75822481_75822603_75823475_75823968_75825391_75825492_75826511
46572	chr1	+	1728	6	NNC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	2145.4616659358	31	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863585_160863777_160864427_160865059_160865118_160865564_160865608_160865794_160865843_160866026
46573	chr5	+	2696	18	FSM	ENSMUSG00000118662.2	ENSMUST00000239501.2	2735	18	40	-1	2	1	multi-exon	TRUE	canonical	3	31	junction_8	6.97499240366195	168	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGATGGTGGTGATGGTG	NA	False	NA	NA	False	NA	NA	NA	124736851	124765804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124737020_124737197_124737306_124737769_124737847_124740077_124740274_124741810_124741912_124745798_124745996_124746581_124746706_124748332_124748475_124750706_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
46574	chr15	+	1695	10	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5995.40157120438	1	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	NA	False	NA	NA	NA	103148864	103153382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103149975_103150329_103150541_103150632_103150728_103150813_103150900_103151070_103151146_103152051_103152213_103152398_103152456_103152682
46575	chr4	-	2280	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	4	12	intron_retention	FALSE	canonical	3	24	junction_9	11.5512812607707	11	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTTAGCACTTGTTCAG	8673	False	NA	NA	False	NA	NA	NA	152112124	152104244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
46576	chr5	+	1651	4	Antisense	novelGene_ENSMUSG00000041548.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	340	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGCTGAGGTCTTGAGC	NA	False	NA	NA	False	NA	NA	NA	116546552	116560852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_116547549_116553464_116553529_116560170_116560705_116560795
46577	chr14	-	1814	4	NNC	ENSMUSG00000075486.11	novel	1090	4	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	201.894912158666	57	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCCTGTGGTGAGCTGA	NA	False	NA	NA	False	NA	NA	NA	101877887	101870418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_101871829_101874389_101874543_101877547_101877736_101877824
46578	chr2	+	2304	10	NNC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	-34	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	588.3117297471	1	118	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8629	False	NA	NA	False	NA	NA	NA	72306562	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_72306656_72309255_72309373_72312034_72312129_72312177_72312293_72312776_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
46579	chr8	-	1513	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	0	-267	0	267	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	464	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTACACAGAAGCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	106937565	106927081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
46580	chr8	+	1034	5	Antisense	novelGene_ENSMUSG00000033106.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAGGCGCGGGGCGCGAC	9932	False	NA	NA	False	NA	NA	NA	106927562	106937567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_106927781_106928861_106928987_106930965_106931173_106936996_106937263_106937349
46581	chr16	+	1640	4	NNC	ENSMUSG00000022774.14	novel	2070	4	NA	NA	-15	-287	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	195.632876128278	222	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCGGAGTCTCGCTAGTT	NA	False	NA	NA	False	NA	NA	NA	31767403	31777003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_31767546_31772942_31773125_31775108_31775190_31775768
46583	chr12	+	1418	5	ISM	ENSMUSG00000021271.6	ENSMUST00000222460.2	2385	7	13670	-176	13670	176	3prime_fragment	FALSE	canonical	3	41	junction_2	12.051970793194	7	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	110830409	110835523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_110830491_110831289_110831440_110832673_110832803_110833141_110833260_110834583
46585	chr14	-	1332	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	-1	at_least_one_novel_splicesite	FALSE	canonical	3	278	junction_1	39.5924235176378	1559	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAAGTGTGCACCGTTTA	NA	False	NA	NA	False	NA	NA	NA	59607998	59586181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
46586	chr5	-	1745	7	NNC	ENSMUSG00000029718.15	novel	1585	10	NA	NA	742	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	213.543646332287	8	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGATCGTGTCTGAGGT	5778	False	NA	NA	False	NA	NA	NA	137607994	137603369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606310_137607219
46587	chr4	-	2437	6	FSM	ENSMUSG00000041153.10	ENSMUST00000037198.10	2658	6	95	126	3	-20	multi-exon	FALSE	canonical	3	76	junction_2	19.0305018325844	73	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTGTGGATGGAACTAC	-1	True	NA	NA	False	NA	NA	NA	16013793	15997246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_15999001_16001929_16002022_16005356_16005549_16006356_16006494_16008600_16008756_16013686
46589	chr2	+	1454	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-6	-63	intron_retention	FALSE	canonical	3	2580	junction_5	1481.81753262674	193	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATAATGCTTTGTGACC	5796	False	NA	NA	False	NA	NA	NA	32851725	32854445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
46591	chr2	-	5659	14	ISM	ENSMUSG00000090100.8	ENSMUST00000057135.14	11066	15	27812	5042	27770	-5042	3prime_fragment	FALSE	canonical	3	15	junction_1	8.94890162180177	9	74	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCATTCTGCATTTGTA	NA	False	NA	NA	False	NA	NA	NA	120653075	120568338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_120570676_120575499_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239_120637388_120652953
46595	chr1	-	2745	5	ISM	ENSMUSG00000026049.12	ENSMUST00000152239.8	1046	6	13	-247	13	-4	intron_retention	FALSE	canonical	3	402	junction_1	13.1339255365637	3	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACAATGGTGCCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	44140819	44125779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007
46596	chr11	+	4739	13	NNC	ENSMUSG00000038756.14	novel	3205	15	NA	NA	-9000	-7607	intron_retention	FALSE	canonical	0	0	junction_2	3.37885582211888	29	30	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGTAAAAAAAAAAATGAT	8279	False	NA	NA	False	NA	NA	NA	96015611	96048670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96015697_96024568_96024788_96025693_96025735_96026310_96026430_96026550_96026682_96029552_96029710_96030455_96030600_96031257_96031344_96036223_96036450_96038230_96038407_96042708_96042898_96043886_96045681_96047298
46597	chr17	-	1916	3	FSM	ENSMUSG00000057411.10	ENSMUST00000236842.2	1886	3	-40	10	-40	1	multi-exon	FALSE	canonical	3	227	junction_2	3.5	610	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATCCTGACTTTTGTTTG	9944	False	NA	NA	False	NA	NA	NA	26011915	26009483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26009753_26009906_26009958_26010319
46599	chr11	-	1261	6	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-78	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	8465.07898132085	5	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6389	False	NA	NA	False	NA	NA	NA	69812094	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808364_69808422_69808555_69808742_69808848_69809976_69810163_69811988
46601	chr7	+	1323	12	ISM	ENSMUSG00000030795.19	ENSMUST00000106251.10	5536	15	2104	4447	2053	-195	internal_fragment	FALSE	canonical	3	619	junction_2	192.777480595617	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCCCAGGAGGGGGACC	3254	False	NA	NA	False	NA	NA	NA	127568732	127580426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362
46603	chr17	+	2554	7	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	-4	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	39.6880194629171	72	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCATGGAAAGATTTT	NA	False	NA	NA	False	NA	NA	NA	21787265	21808958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966_21807278_21807376
46604	chr15	+	1258	4	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	630.303630535845	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4460	False	NA	NA	False	NA	NA	NA	80139699	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141097_80141248
46607	chr9	-	2459	16	FSM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	59	0	0	0	multi-exon	TRUE	canonical	3	108	junction_2	13.5581054068119	159	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATCACTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	59260732	59229272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
46608	chr8	-	2342	19	ISM	ENSMUSG00000031833.11	ENSMUST00000211948.2	4251	26	2402	2727	743	-2204	internal_fragment	FALSE	canonical	3	42	junction_14	8.06225774829855	10	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGACACCCAAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	71242679	71234574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71234786_71236108_71236243_71236343_71236454_71236786_71236910_71237157_71237260_71237371_71237538_71238004_71238138_71238800_71238940_71239213_71239423_71239499_71239586_71239950_71240010_71240305_71240439_71240511_71240614_71240773_71240984_71241370_71241447_71241522_71241681_71241849_71241929_71242491_71242565_71242640
46609	chr8	-	1077	1	ISM	ENSMUSG00000031833.11	ENSMUST00000212140.2	3047	8	4235	60	2135	-60	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCCCTCTACCCATC	NA	False	NA	NA	False	NA	NA	NA	71231897	71230820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71230800_71231900
46612	chr7	+	914	6	ISM	ENSMUSG00000030588.13	ENSMUST00000138128.3	816	7	-35	16	-14	-16	intron_retention	FALSE	canonical	3	54	junction_1	599.91452724534	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTTGTATTCATGGTGA	6146	False	NA	NA	False	NA	NA	NA	28937862	28945403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28937989_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090
46616	chr10	+	1612	14	NNC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	5	-145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	241.626392617751	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTCTGCTGTGTTCCTG	9202	False	NA	NA	False	NA	NA	NA	127102241	127117674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127102410_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111777_127112284_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
46617	chr8	+	1275	7	NNC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	-32	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	358.346085044426	1	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	NA	False	NA	NA	NA	71819553	71822375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71819723_71819878_71820338_71820413_71820493_71820602_71820763_71821490_71821522_71821775_71821948_71822170
46618	chr9	+	1439	9	ISM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	180	20	115	-6	intron_retention	FALSE	canonical	3	687	junction_5	67.9264307909668	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTACTTTTTGTTTTCA	2549	False	NA	NA	False	NA	NA	NA	21323312	21331550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920
46621	chr13	-	1323	3	Antisense	novelGene_ENSMUSG00000052293.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	758	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCAACGGTCGCGAGCGC	NA	False	NA	NA	False	NA	NA	NA	100792568	100788091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_100788293_100790696_100790789_100791538
46622	chr8	+	2151	1	ISM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	8751	5	456	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAACCTGCTGGCTCCCTT	NA	False	NA	NA	False	NA	NA	NA	22559487	22561638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_22559500_22561600
46623	chr17	-	1019	4	NNC	ENSMUSG00000024248.15	novel	1129	4	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	607.169022778849	140	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTTAGTTTGTTTGT	9947	False	NA	NA	False	NA	NA	NA	83821759	83809356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_83809892_83809938_83810167_83811528_83811658_83821632
46625	chr19	+	2326	12	NNC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-16	-7	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_8	23.7963119581568	10	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTACGACGGATTCCT	4296	False	NA	NA	False	NA	NA	NA	5074125	5081985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079279_5079349_5079436_5079523_5080315_5080519_5081029
46626	chr8	+	2337	2	NIC	ENSMUSG00000091490.4	novel	1395	7	NA	NA	3664	-2	intron_retention	FALSE	canonical	3	562	junction_1	0	14	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGGCTCTCTGCAT	NA	False	NA	NA	False	NA	NA	NA	43641746	43646916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_43643407_43646239
46627	chr5	+	1154	3	NNC	ENSMUSG00000005672.13	novel	5241	21	NA	NA	-12432	-1198	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	533	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACACTTCGGAACAAGCC	NA	False	NA	NA	False	NA	NA	NA	75758801	75816156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75758812_75813924_75813986_75815073
46628	chr4	-	3020	9	FSM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	33	0	-32	0	multi-exon	FALSE	canonical	3	69	junction_4	24.0676130931175	218	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	132649836	132626523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
46629	chr9	-	3551	14	NNC	ENSMUSG00000035934.17	novel	3632	13	NA	NA	-14	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	8.37154945256172	2	113	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCACCTACCGAAATACTGA	NA	False	NA	NA	False	NA	NA	NA	37058576	36802291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36835916_36835977_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502_36994573_37058536
46630	chr11	+	2159	2	FSM	ENSMUSG00000018286.7	ENSMUST00000148535.2	966	2	-743	-450	0	-6	multi-exon	FALSE	canonical	3	6021	junction_1	0	12	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAGAGACGTTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	70416192	70418469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70417252_70417369
46631	chr2	+	1644	12	NIC	ENSMUSG00000027523.21	novel	3903	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	236.631666212588	379	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	174169492	174188537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174169735_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
46633	chr17	-	3118	4	NNC	ENSMUSG00000057835.8	novel	2018	4	NA	NA	314	968	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	9.67241208569794	57	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTATCAGTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	56185616	56170923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56173651_56175302_56175364_56175558_56175686_56185413
46634	chr6	-	1928	12	NNC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	135.529326520526	707	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	6885	False	NA	NA	False	NA	NA	NA	88818961	88812895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817815_88817883_88818750
46635	chr17	+	2674	17	NIC	ENSMUSG00000041354.17	novel	943	8	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	31.2534373109583	66	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	4514	False	NA	NA	False	NA	NA	NA	34149835	34156661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34149918_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
46636	chr5	+	2573	17	NNC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-16	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	26.2413676282316	6	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATATGAAGACATATATGC	1583	False	NA	NA	False	NA	NA	NA	35915293	36041470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169_36015313_36032174_36032258_36040649
46637	chr10	-	2027	11	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	7	-180	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	621.295267968459	1	103	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGGTTCCTATTACTG	NA	False	NA	NA	False	NA	NA	NA	127358306	127353187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354635_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
46638	chr2	-	2449	15	FSM	ENSMUSG00000040434.17	ENSMUST00000068586.13	2445	15	-12	8	-12	-2	multi-exon	FALSE	canonical	0	0	junction_10	34.8762389144289	165	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTTATGTGTGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	92201414	92195398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
46639	chr4	-	508	1	ISM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	21152	21	21152	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTAAAAGTGTGCATTACC	NA	False	NA	NA	False	NA	NA	NA	58965967	58965459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_58965500_58966000
46640	chr19	-	1462	9	ISM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	10845	7	-202	-7	3prime_fragment	FALSE	canonical	3	1604	junction_8	457.967503623347	2	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGAGTACTGGCTAACT	NA	False	NA	NA	False	NA	NA	NA	5334638	5323966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602
46641	chr4	+	1662	8	NIC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	-11	362	intron_retention	FALSE	canonical	3	2261	junction_4	105.413084421939	32	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATACTCTTGGGTTAAAAC	NA	False	NA	NA	False	NA	NA	NA	118478033	118483177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118478195_118478278_118478363_118478557_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
46642	chr11	-	1537	8	ISM	ENSMUSG00000018565.18	ENSMUST00000108594.8	1454	9	548	13	-8	-5	3prime_fragment	FALSE	canonical	3	471	junction_7	49.073455978081	2214	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCAATCAAAACCTCTGG	9448	False	NA	NA	False	NA	NA	NA	69871530	69859062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824_69870886_69871039
46643	chr1	-	2396	7	NIC	ENSMUSG00000042305.13	novel	1689	9	NA	NA	0	152	intron_retention	FALSE	canonical	0	0	junction_2	231.68009553405	18	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATCTTATAAGATTGATT	NA	False	NA	NA	False	NA	NA	NA	134289679	134275267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134283455_134288494_134288663_134289271_134289362_134289499
46644	chr18	-	2255	7	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	474.624764068065	1	99	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTCTTTTGTGAATTT	NA	False	NA	NA	False	NA	NA	NA	38472026	38460604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471262_38471956
46645	chr15	+	2498	5	NIC	ENSMUSG00000022244.8	novel	2577	5	NA	NA	106	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	54.5452793557793	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTGGAATCACCAATGCC	155	False	NA	NA	False	NA	NA	NA	10981947	10996710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_10982140_10983435_10983580_10984742_10984933_10988844_10989032_10994925
46646	chr3	+	1723	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	65	0	65	0	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	317	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	NA	False	NA	NA	NA	14951552	14965830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
46647	chr8	+	1848	2	ISM	ENSMUSG00000034807.10	ENSMUST00000212706.2	2860	4	2177	3	2177	-3	3prime_fragment	FALSE	canonical	3	971	junction_1	0	4	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGAAGTCTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	72075503	72077547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_72075941_72076136
46649	chr17	+	1636	11	ISM	ENSMUSG00000091586.3	ENSMUST00000165999.2	1693	13	22	557	22	-557	intron_retention	FALSE	canonical	2	16	junction_2	8.26075057122535	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTTTCTGCTGGGCCTA	NA	False	NA	NA	False	NA	NA	NA	32725457	32747311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020
46651	chr9	-	1673	13	NNC	ENSMUSG00000049526.9	novel	1126	4	NA	NA	-25247	-15008	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	55	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCCACCGGCCAGCTCC	NA	False	NA	NA	False	NA	NA	NA	59472377	59447008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_59447256_59461413_59461509_59462621_59462686_59464152_59464200_59464568_59464679_59465310_59465417_59466604_59466738_59468177_59468358_59469225_59469309_59470147_59470333_59470505_59470595_59471159_59471257_59472140
46653	chr9	+	1557	1	ISM	ENSMUSG00000023473.14	ENSMUST00000024238.11	11547	35	25049	44	8116	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAAGCCGCGCTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	108728567	108730124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108728600_108730100
46654	chr3	-	3398	26	NNC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	31	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	136.60795877254	1	181	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGGTTCCCTGAATATT	NA	False	NA	NA	False	NA	NA	NA	100069682	100045494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100053684_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
46655	chr8	-	384	1	Intergenic	novelGene_1665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGCCCCCAAGTTATTT	724	False	NA	NA	False	NA	NA	NA	73206988	73206604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_73206600_73207000
46656	chr8	-	3104	4	Antisense	novelGene_ENSMUSG00000052794.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAGAGACTACATTTCCC	1058	False	NA	NA	False	NA	NA	NA	73206654	73197743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_73198115_73198325_73199314_73203292_73203584_73205200
46657	chr7	+	2375	6	FSM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	30	7	30	-7	multi-exon	FALSE	canonical	3	35	junction_2	5.53534100123922	94	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCACCGTTCCTATTTC	NA	False	NA	NA	False	NA	NA	NA	105203596	105207589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_105204045_105204428_105205202_105205713_105205886_105206124_105206202_105206556_105206703_105206830
46658	chr19	-	1916	11	NNC	ENSMUSG00000042694.18	novel	1992	10	NA	NA	12	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	53.4961680870696	334	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTGGCATTTCAATTCA	NA	False	NA	NA	False	NA	NA	NA	47525451	47489485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47512012_47512058_47513125_47513195_47517075_47517172_47524634_47524811_47525252
46659	chr7	-	918	2	Antisense	novelGene_ENSMUSG00000063902.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	3	1625	junction_1	0	1	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCGGCCACCTCGACCAG	NA	False	NA	NA	False	NA	NA	NA	83406990	83406012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83406472_83406531
46660	chr9	+	4062	3	NNC	ENSMUSG00000031925.18	novel	6404	5	NA	NA	39513	4	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	1	30	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATTCAGAAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	13613268	13620688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_13613418_13613539_13613652_13616887
46661	chr11	-	2460	8	NNC	ENSMUSG00000000782.17	novel	2471	10	NA	NA	333	85	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	77.6599074457973	7	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	52173065	52143112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_52144813_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948
46662	chr14	-	2516	8	NNC	ENSMUSG00000034190.10	novel	3115	8	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	97.7445650662992	2	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGTTTTGTTGTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	69970009	69954451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_69955750_69955963_69956147_69957192_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
46663	chr6	+	1240	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	59	1238	0	48	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	27	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCATGTCTAAAGGGTTT	3	True	NA	NA	False	NA	NA	NA	17637040	17665733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
46664	chr13	-	2324	4	ISM	ENSMUSG00000021519.12	ENSMUST00000173158.8	1415	8	26	9060	0	3	5prime_fragment	FALSE	canonical	3	14	junction_2	156.610628275634	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTCATTACTGTTTTT	424	False	NA	NA	False	NA	NA	NA	67081105	67069249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_67071010_67076233_67076352_67077948_67078288_67080998
46665	chr17	-	2018	13	NNC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	676.268822905014	1	96	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45906468	45896125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899340_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
46667	chrX	-	2299	4	NIC	ENSMUSG00000001134.10	novel	659	6	NA	NA	204	0	intron_retention	FALSE	canonical	3	588	junction_2	26.7706306736817	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	20827950	20818161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_20818511_20825596_20825705_20825973_20826042_20826176
46668	chr1	-	1046	5	Genic_Genomic	ENSMUSG00000101711.2	novel	529	2	NA	NA	-218	-4054	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGCCCATGGACCAACAC	1928	False	NA	NA	False	NA	NA	NA	34484029	34482645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_34482775_34482847_34483004_34483076_34483172_34483275_34483351_34483438
46669	chrX	-	1313	8	NNC	ENSMUSG00000031167.17	novel	1338	7	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	500.151079215887	7921	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATACTGATAATGCTTTT	6557	False	NA	NA	False	NA	NA	NA	8011940	8008601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010526_8010685_8010811_8010919_8011193_8011312_8011876
46670	chr5	+	2091	1	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	2	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGTTCCTGTTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	124254163	124256254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_124254200_124256300
46671	chr2	+	1975	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	168	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1945	False	NA	NA	False	NA	NA	NA	122016752	122036878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
46672	chr16	-	2112	12	Antisense	novelGene_ENSMUSG00000022721.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGCTGGCCAGCGCACAC	2426	False	NA	NA	False	NA	NA	NA	18071303	18066893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18067113_18067345_18067898_18068317_18068425_18068681_18068865_18069018_18069133_18069220_18069335_18069410_18069520_18069984_18070112_18070264_18070341_18070581_18070696_18070783_18070838_18070960
46673	chr14	+	2229	11	FSM	ENSMUSG00000004561.15	ENSMUST00000166408.8	3404	11	-5	1180	-5	-1	multi-exon	FALSE	canonical	3	141	junction_8	17.3885019481265	2	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAATAGAGGTGGATGT	NA	False	NA	NA	False	NA	NA	NA	52122386	52129316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
46674	chr2	-	2030	11	NIC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	0	-10	intron_retention	FALSE	canonical	3	47	junction_10	7.71751255262989	150	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTGGTCTCTCTCTCTC	7333	False	NA	NA	False	NA	NA	NA	154400764	154386328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
46675	chr13	+	2647	4	FSM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	34	-1635	2	1635	multi-exon	FALSE	canonical	3	59	junction_3	14.6363322667334	3	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTGAAGTGACTTTACT	2708	False	NA	NA	False	NA	NA	NA	54722861	54730576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533
46676	chr10	-	1065	9	NNC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	11	-67	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	407.282898456343	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTTTGGATCATACTC	6611	False	NA	NA	False	NA	NA	NA	40122978	40099489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40099917_40101292_40101438_40103554_40103648_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
46677	chr11	+	3386	27	FSM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	67	0	-7	0	multi-exon	TRUE	canonical	3	13	junction_14	12.2793543958426	25	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTTCTTTTTACATT	NA	False	NA	NA	False	NA	NA	NA	108316084	108751441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
46678	chr17	+	2222	3	NIC	ENSMUSG00000042099.17	novel	1640	10	NA	NA	-819	0	intron_retention	FALSE	canonical	3	306	junction_1	5	116	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	5442	False	NA	NA	False	NA	NA	NA	34037803	34041891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34037972_34038065_34038971_34040742
46679	chr15	-	2630	7	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	9	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	207.935887555115	2	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTTAGAGACTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	79855310	79800017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79801180_79801694_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855075
46680	chr17	-	1622	8	FSM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	17	-20	17	0	multi-exon	FALSE	canonical	3	30	junction_6	28.3196045170126	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	NA	False	NA	NA	NA	34219304	34215006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
46681	chr4	-	3249	7	NIC	ENSMUSG00000028952.13	novel	2709	10	NA	NA	17	-9	intron_retention	FALSE	canonical	3	24	junction_6	12.5532200384337	2	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGCACTTGTTCAGTGT	8720	False	NA	NA	False	NA	NA	NA	152112077	152104241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104736_152105000_152105373_152105745_152105901_152105998_152106086_152106483_152107265_152110234_152111517_152111999
46683	chr8	-	4202	23	NNC	ENSMUSG00000031835.17	novel	4336	24	NA	NA	8784	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	212.035315941971	1	263	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCATGTGTCGTGCCCC	NA	False	NA	NA	False	NA	NA	NA	120276396	120234889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235708_120236992_120237121_120240608_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264929_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272984_120274138_120274625_120276296
46684	chr3	+	3600	8	FSM	ENSMUSG00000036580.16	ENSMUST00000107971.9	3567	8	-21	-12	0	1	multi-exon	TRUE	canonical	3	36	junction_3	57.8710741604975	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATGTATTCACTGGACT	NA	False	NA	NA	False	NA	NA	NA	55019528	55044744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
46685	chr13	+	2784	3	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	51	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	97.5	3	131	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTGGAATATTGCGAAC	NA	False	NA	NA	False	NA	NA	NA	97619259	97633505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619634_97630924
46686	chr14	-	2518	22	NNC	ENSMUSG00000025557.11	novel	3121	23	NA	NA	-240	-783	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.5037862746375	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTTAAAAAAATTTTTT	2898	False	NA	NA	False	NA	NA	NA	121742904	121697815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_121698189_121699938_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121742616
46687	chr11	+	2512	13	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	3	-28	intron_retention	FALSE	canonical	2	19	junction_7	269.914029522982	26	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAGCAGGAATAAAGAGTCG	NA	False	NA	NA	False	NA	NA	NA	120564202	120600240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592060_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120600073_120600169
46688	chr17	-	1758	8	NIC	ENSMUSG00000061613.14	novel	975	9	NA	NA	0	-6	intron_retention	FALSE	canonical	3	1293	junction_6	1758.43012081684	4	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTATTGGTGTGACTTC	NA	False	NA	NA	False	NA	NA	NA	31877729	31866061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31871543_31873952_31874041_31877626
46689	chr12	+	2062	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	12	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	245.866946854504	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516902	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565915_86567741
46690	chr4	-	1733	8	NIC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	-2	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	146.72367475869	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGAATCTGTGTCTGGG	NA	False	NA	NA	False	NA	NA	NA	120682895	120614639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120647573_120647687_120682726
46692	chr6	+	940	8	ISM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-34	746	-7	106	5prime_fragment	FALSE	canonical	3	3577	junction_4	212.973122765311	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCGTTATGACTGGTG	NA	False	NA	NA	False	NA	NA	NA	124908360	124912362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195
46694	chr1	+	2071	2	FSM	ENSMUSG00000064602.3_ENSMUSG00000025967.17	ENSMUST00000126469.2	815	2	-23	-1233	-5	0	multi-exon	FALSE	canonical	3	2982	junction_1	0	49	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_63216451_63216912
46695	chrX	+	1816	5	Antisense	novelGene_ENSMUSG00000055746.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	862	13	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATGGCGCAGAGTCCA	NA	False	NA	NA	False	NA	NA	NA	153810173	153816293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_153811647_153812582_153812675_153814606_153814712_153815455_153815559_153816250
46696	chr7	+	2033	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	1	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	387	False	NA	NA	False	NA	NA	NA	44465823	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478097_44478471
46697	chr3	+	1665	13	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	24	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	681.317244387664	1	69	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCGTGCTGGATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32762937	32781119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763058_32766243_32766425_32768665_32768767_32769564_32769663_32772179_32772270_32772516_32772624_32772715_32772806_32774049_32774108_32774336_32774444_32774583_32774665_32776768_32776865_32779395_32779483_32780670
46698	chr5	-	1416	3	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	104	-47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	839	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGCCCGGAGAGTTACT	NA	False	NA	NA	False	NA	NA	NA	36954012	36952257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36953289_36953546_36953647_36953727
46702	chr15	-	4483	9	FSM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	57	21	57	-21	multi-exon	FALSE	canonical	3	32	junction_4	8.71779788708135	92	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGTTTACTGAAATAA	7165	False	NA	NA	False	NA	NA	NA	37961290	37924216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37927642_37929281_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
46704	chr4	-	2469	4	FSM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	25	1011	25	-1011	multi-exon	FALSE	canonical	3	70	junction_1	2.62466929133727	65	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGGGGTTTTATTGTTT	8275	False	NA	NA	False	NA	NA	NA	133746127	133731651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133733633_133735221_133735407_133745363_133745561_133746021
46705	chr10	-	1861	8	NNC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	63.4967458590901	96	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	115198152	115176643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_115177245_115178378_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
46706	chr1	-	1648	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	-1	4	-1	2	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	458	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAGGTGTGTGGTTCAT	NA	False	NA	NA	False	NA	NA	NA	194813870	194786101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
46707	chr7	-	3234	11	NIC	ENSMUSG00000030630.17	novel	1585	14	NA	NA	-87	-16	intron_retention	FALSE	canonical	2	3	junction_3	32.0313908533488	2	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGCCACAGAAATCTC	NA	False	NA	NA	False	NA	NA	NA	84255024	84234382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_84234553_84238038_84238157_84238781_84238884_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84250363_84251288_84251400_84254850
46708	chr6	+	1236	6	NNC	ENSMUSG00000030060.15	novel	1464	7	NA	NA	-3	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	459.267416653958	9	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGCTGGCAAGAGTTCT	2984	False	NA	NA	False	NA	NA	NA	87890936	87913596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87890994_87891472_87891678_87894820_87894965_87898507_87898634_87910237_87910417_87913071
46709	chr2	-	2150	13	FSM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	97	2	11	-2	multi-exon	FALSE	canonical	3	215	junction_12	29.1989107483291	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATATGTTTTGACTGTTTC	NA	False	NA	NA	False	NA	NA	NA	118987418	118967483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
46710	chr4	+	2725	16	NNC	ENSMUSG00000017264.17	novel	2682	24	NA	NA	16	177	intron_retention	FALSE	non_canonical	0	0	junction_13	149.790609407488	1	129	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACATAAATAATATAGTTT	NA	False	NA	NA	False	NA	NA	NA	148642934	148661247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653117_148657595_148657647_148657734_148657842_148660265
46711	chrX	+	3530	1	NIC	ENSMUSG00000045237.6	novel	1094	3	NA	NA	4	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTTTATGAAGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	69429486	69433016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_69429500_69433000
46713	chr9	-	3564	8	NNC	ENSMUSG00000032311.18	novel	1927	8	NA	NA	-8519	1641	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	8.39825054668518	52	32	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCAGGAGGATCTCTGAG	5567	False	NA	NA	False	NA	NA	NA	55199428	55125864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_55128693_55133899_55134039_55135136_55135223_55143723_55143804_55149344_55149489_55188170_55188268_55189834_55189901_55199304
46714	chr8	-	1616	11	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	151.384972834162	66	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTGGTACTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83500774	83490248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_83490823_83490867_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
46716	chr6	+	1544	11	NIC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	960	junction_9	77.7987789107258	4	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGTCTCTGTTGCCTC	5421	False	NA	NA	False	NA	NA	NA	83031709	83034658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033860_83033958_83034075_83034256_83034376_83034478
46717	chr11	-	2491	5	NNC	ENSMUSG00000075611.6	novel	375	3	NA	NA	-3213	1844	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	1.58113883008419	89	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTTTCTCTGTA	2130	False	NA	NA	False	NA	NA	NA	94651802	94645957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94647982_94648187_94648387_94648522_94648622_94649100_94649124_94651656
46718	chr2	+	2461	1	NIC	ENSMUSG00000026755.15	novel	579	4	NA	NA	2519	-329	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCCCCGCTGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	38902548	38905009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_38902500_38905000
46719	chr1	+	4071	8	FSM	ENSMUSG00000026638.16	ENSMUST00000076521.7	4113	8	15	27	15	-27	multi-exon	FALSE	canonical	3	26	junction_1	3.81190401832181	23	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAGAACGTAAAATAAACT	NA	False	NA	NA	False	NA	NA	NA	192835433	192854304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_192835608_192839523_192839701_192843920_192844126_192844909_192845039_192848073_192848233_192849746_192850140_192850824_192850944_192851589
46720	chr3	+	2142	4	NNC	ENSMUSG00000037661.15	novel	2139	4	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	43.5226633171986	26	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGGGAGATTAGCTCA	NA	False	NA	NA	False	NA	NA	NA	30910141	30951324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30910395_30931383_30931711_30944090_30944191_30949862
46721	chr4	-	1035	8	NNC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	51	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	228.444071662083	6	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTAGTGGTCAGAGTTCT	NA	False	NA	NA	False	NA	NA	NA	134642275	134625174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134625338_134625431_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
46722	chr10	-	1347	9	NNC	ENSMUSG00000020069.17	novel	2168	10	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	164.148132413988	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5756	False	NA	NA	False	NA	NA	NA	62859698	62851206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851501_62851854_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
46723	chr14	-	1150	8	NNC	ENSMUSG00000060373.16	novel	1691	9	NA	NA	26	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1360.18033018135	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAACTGTCTCCAAAATA	8810	False	NA	NA	False	NA	NA	NA	52341400	52312257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319302_52321614_52321849_52341345
46724	chr7	-	3466	6	NIC	ENSMUSG00000053985.11	novel	3411	5	NA	NA	4	2	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	3.65513337649941	61	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGCCCAGATTGGTATA	NA	False	NA	NA	False	NA	NA	NA	29750794	29735781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29738842_29742954_29743082_29744144_29744234_29745163_29745265_29749864_29749929_29750769
46725	chr17	+	1832	9	FSM	ENSMUSG00000090083.12	ENSMUST00000234362.2	1780	9	-56	4	22	-4	multi-exon	FALSE	canonical	2	15	junction_3	87.2496418330757	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCAGTTGCTCAGCTGGG	NA	False	NA	NA	False	NA	NA	NA	29833885	29860619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29834053_29840482_29840612_29845479_29845817_29845920_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
46726	chrX	+	2987	7	Antisense	novelGene_ENSMUSG00000088451.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	126	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTAGGGGAGGGGAGGGC	NA	False	NA	NA	False	NA	NA	NA	166130015	166165724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_166131994_166133507_166133666_166135127_166135308_166146542_166146665_166148113_166148204_166156982_166157183_166165465
46727	chr11	-	1698	3	FSM	ENSMUSG00000039337.4	ENSMUST00000039146.4	2046	3	348	0	348	0	multi-exon	FALSE	canonical	3	61	junction_1	13.5	209	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTGCAGTCTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	121009155	121007040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_121008523_121008652_121008727_121009013
46728	chr15	+	1603	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	-3	intron_retention	FALSE	canonical	0	0	junction_5	316.528039832177	86	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAATTATCCGACTTACT	4	True	NA	NA	False	NA	NA	NA	10486103	10493757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
46730	chr1	+	2126	13	NNC	ENSMUSG00000049439.14	novel	2223	13	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	28.4717208627945	208	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGATTGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	60382476	60427219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_60382617_60391279_60391330_60392169_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
46731	chr9	+	1179	5	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGTGGCTCGGTGGAATC	NA	False	NA	NA	False	NA	NA	NA	78385743	78387269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386816_78386904_78387057_78387133
46732	chr9	-	2341	10	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	3	214	intron_retention	FALSE	canonical	3	181	junction_9	24.3584345419268	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGAATATTTGGATTTT	9295	False	NA	NA	False	NA	NA	NA	26910798	26886457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26902706_26903455_26903557_26910689
46733	chr1	-	1710	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-2	352	-2	139	multi-exon	FALSE	canonical	3	59	junction_8	12	6	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCACTGTGTTCTGTTATC	NA	False	NA	NA	False	NA	NA	NA	90017868	89970208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
46734	chrX	+	1864	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	-56	0	-56	0	multi-exon	FALSE	canonical	3	839	junction_1	0	626	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	85235313	85239553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_85236581_85238956
46735	chr4	-	2676	7	Antisense	novelGene_ENSMUSG00000028221.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	778	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAAGGGGAGACGGGA	NA	False	NA	NA	False	NA	NA	NA	14915474	14864034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_14864436_14886531_14886678_14892388_14892497_14893497_14893622_14902484_14902540_14912431_14912523_14913723
46736	chr7	+	3103	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178876.10	3282	3	142	37	-53	-37	multi-exon	FALSE	canonical	3	43	junction_1	1.5	129	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATCAAATTACTAATAAAT	NA	False	NA	NA	False	NA	NA	NA	37883219	37896955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_37883325_37888030_37888202_37894128
46737	chrX	-	2202	9	FSM	ENSMUSG00000087396.8	ENSMUST00000130744.8	3369	9	53	1114	53	-210	multi-exon	FALSE	canonical	1	1	junction_5	1.31695671910659	7	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGACGAAATGCCAGTTC	NA	False	NA	NA	False	NA	NA	NA	74808252	74770184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_74771125_74774625_74774789_74779698_74779862_74785421_74785585_74790282_74790446_74795130_74795294_74798971_74799135_74803837_74804001_74808131
46738	chr19	+	1087	5	NNC	ENSMUSG00000056201.9	novel	1148	6	NA	NA	0	2	intron_retention	FALSE	non_canonical	0	0	junction_2	2714.10412244998	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540512	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542684_5542750_5542833_5543182_5543260_5543408
46739	chr11	+	2783	19	NIC	ENSMUSG00000020893.18	novel	3507	18	NA	NA	33	138	combination_of_known_junctions	FALSE	canonical	2	8	junction_18	6.13555716527807	66	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCCACCCCCACCAGCC	NA	False	NA	NA	False	NA	NA	NA	68986075	68997422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68986130_68991334_68991743_68991830_68991930_68992021_68992177_68992276_68992399_68992500_68992703_68992812_68992865_68992989_68993133_68993499_68993579_68993650_68993758_68993929_68994084_68994178_68994288_68994374_68994507_68994667_68994774_68994856_68995029_68995116_68995248_68995459_68995640_68996215_68996450_68997278
46741	chr9	-	1229	7	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1696.49855093759	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGTGAGTAGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	110775165	110768675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769075_110769711_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
46742	chr2	-	1929	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	0	-3	0	3	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCTGTTTTTCCTTTAC	5229	False	NA	NA	False	NA	NA	NA	84508462	84501656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
46743	chr14	+	2130	9	NNC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	-8110	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	181.826110267475	7	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACTTTTCAGTAGTTTT	776	False	NA	NA	False	NA	NA	NA	122107921	122258442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122108016_122111718_122111823_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
46744	chr3	-	3084	12	FSM	ENSMUSG00000025759.12	ENSMUST00000026859.11	3151	12	49	18	-20	-18	multi-exon	FALSE	canonical	3	17	junction_5	6.38308715692435	78	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCATATTTCCAGTACA	NA	False	NA	NA	False	NA	NA	NA	40801271	40772555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_40774156_40776297_40776546_40776629_40776734_40778261_40778397_40781308_40781418_40785058_40785115_40786447_40786593_40788378_40788493_40789603_40789845_40791523_40791568_40793848_40793941_40801075
46745	chr6	-	2122	9	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	5019	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	646.615225617214	1	106	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTTGCCAAATCATGTT	2904	False	NA	-35	True	NA	NA	NA	47785279	47773090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775549_47776184_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108
46746	chr6	+	1817	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	3	2240	3	-2240	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	969	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTATATGTGTGTGCGGT	7119	False	NA	NA	False	NA	NA	NA	125016810	125026222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
46749	chr16	-	3664	6	NNC	ENSMUSG00000040820.17	novel	682	6	NA	NA	4704	-110	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	18.062115047801	27	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAGTACAACCAAATCTT	NA	False	NA	NA	False	NA	NA	NA	93971155	93929852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_93932825_93933859_93934074_93935507_93935623_93939667_93939829_93942207_93942276_93971021
46750	chr13	+	1229	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	-4	-3	-4	3	multi-exon	TRUE	canonical	3	544	junction_6	97.8154352594722	2515	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGACTTTATAGATATTT	NA	False	NA	NA	False	NA	NA	NA	100261355	100274201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
46751	chr11	+	1087	5	ISM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	34	15	1	-15	intron_retention	FALSE	canonical	3	9068	junction_1	3226.1821089331	345	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97917783	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600
46753	chr14	+	1050	9	NIC	ENSMUSG00000021996.17	novel	794	8	NA	NA	-21	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	441.979337045297	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATTGTTATTTTACCAC	NA	False	NA	NA	False	NA	NA	NA	74973073	74987293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_74973140_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
46754	chr1	-	2085	16	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-8	-25	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	132.616171294789	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAACAAACAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	160898236	160869099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160898112
46755	chr9	-	4122	2	FSM	ENSMUSG00000037419.10	ENSMUST00000167549.2	4470	2	299	49	40	-49	multi-exon	FALSE	canonical	3	20	junction_1	0	28	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGATGCTCAATAAAGTC	NA	False	NA	NA	False	NA	NA	NA	14292239	14265334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_14269184_14291966
46756	chr10	+	1376	8	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1916.39562827764	2	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	126899460	126903166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900876_126901023_126901134_126901821_126901873_126901969_126902106_126902797
46757	chr11	+	1574	9	NIC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	22	-10	intron_retention	FALSE	canonical	3	2261	junction_5	150.758084360342	6	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATGATAAACACTACAACT	4558	False	NA	NA	False	NA	NA	NA	106147001	106153936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152859_106152943_106153329_106153406_106153518_106153622_106153710_106153834
46758	chr8	+	3835	17	NIC	ENSMUSG00000031979.18	novel	2825	18	NA	NA	0	-12	intron_retention	FALSE	canonical	3	176	junction_7	26.9170455984679	7	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTACTGCAAATGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	125247542	125278735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
46759	chr9	-	1494	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	736	2	-13	-2	multi-exon	FALSE	canonical	3	2040	junction_3	82.3825763671475	7284	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATCAGATGTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	121686692	121677630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
46760	chr3	+	481	3	FSM	ENSMUSG00000027907.5	ENSMUST00000029515.5	511	3	31	-1	31	1	multi-exon	FALSE	canonical	3	443	junction_1	9.5	5420	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGAGAGTCAGTAGATTT	NA	False	NA	NA	False	NA	NA	NA	93427825	93433595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_93427861_93431357_93431507_93433298
46761	chr8	-	2527	14	FSM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	33	-3	-26	3	multi-exon	FALSE	canonical	3	11	junction_10	4.2966892442366	75	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGTCTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	123338169	123304977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
46762	chr14	-	3416	18	NNC	ENSMUSG00000035161.8	novel	10883	18	NA	NA	779	-7218	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_14	150.083529222712	2	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTATTTTACTCTTGT	NA	False	NA	NA	False	NA	NA	NA	62997782	62930470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_62931124_62933147_62933242_62934041_62934405_62938079_62938312_62939819_62939963_62940622_62940750_62942132_62942346_62943301_62943413_62945053_62945149_62946339_62946473_62946916_62947070_62951133_62951292_62951741_62951868_62953747_62953932_62971076_62971300_62981357_62981448_62996649_62996800_62997614
46763	chr3	+	2495	6	FSM	ENSMUSG00000028057.15	ENSMUST00000029692.15	1204	6	20	-1311	-18	-3	multi-exon	FALSE	canonical	3	56	junction_4	6.67532770731145	232	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAACAAGGTGTCAGATT	2237	False	NA	NA	False	NA	NA	NA	88624164	88638345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633376_88633586_88633779_88636418
46764	chr19	+	4131	2	NNC	ENSMUSG00000025078.10	novel	8591	11	NA	NA	28515	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	48	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAAGTTGTGTTTCTGT	4888	False	NA	NA	False	NA	NA	NA	56587743	56591928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_56588125_56588178
46765	chr2	+	1791	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	164	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	965.17149253384	1	93	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	NA	False	NA	NA	NA	130116575	130121226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118062_130118336_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119895_130120075_130120211_130120816
46766	chr5	-	1996	16	NIC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	-1	180	combination_of_known_junctions	FALSE	canonical	1	8	junction_4	64.7952673168856	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGAAATTCCTCGGCCTAA	NA	False	NA	NA	False	NA	NA	NA	9211744	9171273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_9171463_9171781_9171938_9174441_9174528_9176539_9176644_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
46770	chr13	-	1408	5	FSM	ENSMUSG00000069206.15	ENSMUST00000225479.2	1092	5	31	-347	28	347	multi-exon	FALSE	canonical	0	0	junction_1	45.4780166673966	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGAGCTTACATTCCA	10010	False	NA	NA	False	NA	NA	NA	67599671	67590026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67591057_67591339_67591454_67596939_67597036_67597468_67597596_67599630
46772	chr5	+	1659	9	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-2	-927	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	399.946793336314	1	51	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCAGACTCTGGCTAAGC	NA	False	NA	NA	False	NA	NA	NA	111478626	111535298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
46773	chr19	-	1658	10	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	58	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.867890317529	2	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAATGGAGTTTGTGATC	8375	False	NA	NA	False	NA	NA	NA	43512986	43488196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43488346_43488627_43488975_43491378_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
46776	chr8	+	2533	5	ISM	ENSMUSG00000002948.20	ENSMUST00000110996.2	1188	10	1283	-2056	-90	0	3prime_fragment	FALSE	canonical	3	271	junction_1	17.5712833908056	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	4294546	4297897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
46779	chr15	+	3090	20	NIC	ENSMUSG00000042303.20	novel	2997	22	NA	NA	-6	179	intron_retention	FALSE	canonical	3	124	junction_4	14.7507453213262	13	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCAAGCCTCCCATCTTT	NA	False	NA	NA	False	NA	NA	NA	80862014	80896269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
46780	chr15	+	1950	11	Intergenic	novelGene_3368	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	247	4	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCGCCACAGCCTCGGA	NA	False	NA	NA	False	NA	NA	NA	99633472	99670280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_99634316_99636543_99636702_99637144_99637203_99637286_99637398_99637488_99637611_99638823_99638918_99639489_99639541_99643769_99643826_99644915_99645049_99649116_99649225_99670064
46781	chr11	+	2776	14	FSM	ENSMUSG00000018661.18	ENSMUST00000018805.15	3935	14	613	546	454	1	multi-exon	FALSE	canonical	3	202	junction_2	35.2900073021332	122	6	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGCCTCTGCTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	113540607	113553227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_113540702_113542670_113542913_113543050_113543233_113543367_113543539_113544729_113544887_113545793_113546005_113546685_113547475_113547828_113547976_113548200_113548363_113549304_113549433_113550094_113550204_113551768_113551879_113551965_113552045_113553032
46783	chr5	+	1554	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	320	14	-2	-14	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	1884	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTCTTTCAAGTCTTT	5872	False	NA	NA	False	NA	NA	NA	31855347	32242292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
46784	chr11	-	4052	22	FSM	ENSMUSG00000042208.16	ENSMUST00000180260.8	4128	22	68	8	-14	-8	multi-exon	TRUE	canonical	3	83	junction_12	9.91208520476776	55	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCAATGACAAAAATTGTG	NA	False	NA	NA	False	NA	NA	NA	23583563	23523795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_23525518_23526730_23526823_23531595_23531685_23532866_23532941_23533097_23533127_23534519_23534612_23538634_23538735_23539950_23539984_23543425_23543526_23545380_23545527_23556613_23556767_23559000_23559125_23561746_23561858_23561961_23562049_23565095_23565257_23567137_23567197_23570228_23570468_23572435_23572530_23574935_23575123_23578872_23579032_23581204_23581335_23583492
46785	chr17	-	4629	1	NIC	ENSMUSG00000096780.8	novel	2426	9	NA	NA	402	-2663	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	104	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACATTTACAGTCAACTGC	NA	False	NA	NA	False	NA	NA	NA	6716092	6711463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_6711500_6716100
46786	chr1	-	1730	8	NIC	ENSMUSG00000026047.14	novel	1765	9	NA	NA	-14	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	110.049895919245	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGGGTCTGTTTTGTTAC	NA	False	NA	NA	False	NA	NA	NA	44157982	44146048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_44146265_44146924_44147033_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
46788	chr17	-	2633	9	NNC	ENSMUSG00000019214.15	novel	3812	19	NA	NA	-2634	-3	intron_retention	FALSE	canonical	0	0	junction_8	257.509192797073	11	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGTGTGGGTCAGGCTCA	9558	False	NA	NA	False	NA	NA	NA	25942509	25938023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941821
46789	chrX	-	2077	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	68	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.784593516168	1	68	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGAGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	149800250	149766138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766370_149769087_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780185_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
46790	chr7	+	1967	11	NIC	ENSMUSG00000030523.19	novel	2575	11	NA	NA	-32	-24	combination_of_known_junctions	FALSE	canonical	3	5	junction_4	355.398086657765	1	80	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAACTGCAGCAATTCC	NA	False	NA	NA	False	NA	NA	NA	63835265	63861151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851584_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
46791	chr16	-	2321	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	990.971523304278	2	100	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	55850037	55835868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55837681_55838834_55838891_55840073_55840217_55842417_55842493_55844586_55844750_55849965
46792	chr15	+	2069	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	30	15	30	-14	multi-exon	FALSE	canonical	3	579	junction_9	64.3868516598433	1	96	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTCTAACTTTATACTG	NA	False	NA	NA	False	NA	NA	NA	81900599	81924271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
46793	chr5	+	1019	6	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	165	-103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8684.88731993686	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTGGGCTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	115697846	115701683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115698975_115699230_115699305_115699391_115699578_115700484_115700626_115701341
46794	chr19	-	1296	9	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	7	0	intron_retention	FALSE	canonical	3	413	junction_5	271.660605121538	14	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5829	False	NA	NA	False	NA	NA	NA	46327092	46318982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751
46795	chrX	-	1099	10	ISM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	4844	5	166	-5	3prime_fragment	FALSE	canonical	3	1120	junction_8	125.305848050103	11	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72825659	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611
46796	chr2	-	2709	13	NIC	ENSMUSG00000040434.17	novel	2445	15	NA	NA	5	0	intron_retention	FALSE	canonical	3	81	junction_9	19.1664855063902	140	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	92201351	92195390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
46798	chr1	-	1633	7	NNC	ENSMUSG00000059498.14	novel	1347	5	NA	NA	-1310	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	70.3980744686166	50	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGGGCTAAGGATCTCCT	NA	False	NA	NA	False	NA	NA	NA	170888282	170878751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_170879422_170881507_170881763_170885259_170885518_170886154_170886176_170886837_170886964_170887195_170887296_170888079
46800	chr2	+	1343	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	48	1499	48	-7	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTGCCTGGGGAAGTT	NA	False	NA	NA	False	NA	NA	NA	27405216	27425048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
46801	chr14	-	1222	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-1	-1120	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1817.11680967405	21	31	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATCTCTTATGCTTTC	NA	False	NA	NA	False	NA	NA	NA	36857212	36843900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36847927_36849539_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
46802	chr9	-	2428	20	NNC	ENSMUSG00000040111.18	novel	7488	20	NA	NA	-12581	-7	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_19	5.57795423136496	72	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGATTTTAAAAAAAGAGATA	7534	False	NA	NA	False	NA	NA	NA	40325746	40209178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_40209376_40210897_40211016_40211284_40211393_40214793_40214885_40215618_40215823_40216361_40216466_40217627_40217771_40218035_40218155_40219151_40219296_40219588_40219779_40221193_40221351_40223053_40223170_40226262_40226344_40226983_40227080_40228160_40228265_40228804_40228890_40238713_40238735_40244740_40244952_40324592_40324671_40325685
46803	chr11	-	1230	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9171.12043373109	1	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113067	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104055_33106017_33106105_33106663_33106748_33106990_33107049_33109933_33109989_33110327_33110441_33110827_33110922_33111105_33111226_33111547_33111614_33112921
46804	chr9	+	1748	9	FSM	ENSMUSG00000010057.9	ENSMUST00000193628.6	1736	9	-11	-1	-7	1	multi-exon	FALSE	canonical	3	98	junction_4	11.1235954169504	290	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGGAATATTGAGTAC	NA	False	NA	NA	False	NA	NA	NA	107419432	107422895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422587_107422689
46805	chr1	-	1697	11	NNC	ENSMUSG00000006299.14	novel	1817	11	NA	NA	6	-10	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	386.951792863142	367	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTCCCATTGGCAGTGT	NA	False	NA	NA	False	NA	NA	NA	74323833	74319014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_74319469_74319941_74320097_74320247_74320339_74320527_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
46806	chr8	-	752	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	98	-1	26	-1	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	141	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTCTCCTCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	123303531	123301374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
46807	chr14	+	1505	10	NIC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	-5	428	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	39.4658783705058	34	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTAGACGTTCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	55909831	55916201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55909950_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
46808	chr2	+	2991	12	FSM	ENSMUSG00000038963.16	ENSMUST00000038259.13	3010	12	4	15	4	0	multi-exon	FALSE	canonical	3	51	junction_3	7.21568539381252	97	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCTTGTGTGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	180098041	180116645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
46809	chr15	+	2804	19	NNC	ENSMUSG00000023007.16	novel	2619	25	NA	NA	0	-3425	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_18	45.4269526238703	11	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCAACGTTTCAAAGTTA	NA	False	NA	NA	False	NA	NA	NA	99193124	99209549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99193155_99201163_99201245_99201921_99202066_99202305_99202372_99203046_99203075_99203288_99203315_99203421_99203533_99203831_99203953_99204042_99204068_99204276_99204481_99204685_99204813_99204893_99204959_99205437_99205603_99205702_99205812_99206071_99206223_99206943_99207078_99207565_99207681_99207824_99207917_99208539
46810	chr7	-	2079	4	NNC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	-51	-11	intron_retention	FALSE	canonical	1	2	junction_3	86.2708911897093	19	27	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCCTGCTCTGTCTGTCT	9938	False	NA	NA	False	NA	NA	NA	44738082	44732347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44732788_44732989_44734389_44736088_44736262_44738015
46811	chr8	-	1760	7	NIC	ENSMUSG00000008892.13	novel	1354	9	NA	NA	-21	-899	intron_retention	FALSE	canonical	3	2053	junction_6	129.98130207414	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAATCTTTGCAACCTC	NA	False	NA	NA	False	NA	NA	NA	23083748	23068000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
46812	chr8	-	698	1	NIC	ENSMUSG00000008892.13	novel	1423	9	NA	NA	8335	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGTTCATCTGACTTCT	NA	False	NA	NA	False	NA	NA	NA	23067802	23067104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23067100_23067800
46813	chr1	-	3065	8	Genic_Genomic	ENSMUSG00000102840.2	novel	1624	1	NA	NA	-11006	-1164	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAACCGGCCACCGGGTC	797	False	NA	NA	False	NA	NA	NA	191565111	191553645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_191553852_191554256_191554475_191554601_191554845_191557594_191557678_191558334_191558460_191559259_191559482_191561503_191561627_191563266
46814	chr17	+	2479	3	FSM	ENSMUSG00000024038.18	ENSMUST00000191598.3	645	3	-38	-1796	-3	-357	multi-exon	FALSE	canonical	3	11	junction_2	1845	24	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTTTTTTAAAAACA	NA	False	NA	NA	False	NA	NA	NA	31739120	31748015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31739236_31740542_31740667_31745775
46815	chr3	-	3974	6	NNC	ENSMUSG00000047583.10	novel	488	4	NA	NA	15	3481	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.3744406335545	8	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAATCAGAAAGGCAATG	NA	False	NA	NA	False	NA	NA	NA	154302717	154289710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_154292913_154292955_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
46816	chr15	-	2363	14	NIC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	647	junction_2	85.7954771845547	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTTCTTTTATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99149844	99140700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99148464_99149742
46817	chr7	-	1007	1	Intergenic	novelGene_3040	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATGTGCATGTACATTAT	5126	False	NA	NA	False	NA	NA	NA	130239456	130238449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_130238400_130239500
46821	chr14	-	1680	13	NNC	ENSMUSG00000021814.18	novel	2851	13	NA	NA	0	361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	273.099328185837	3	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8170	False	NA	NA	False	NA	NA	NA	20530009	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514757_20514967_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
46822	chr19	+	1649	2	Antisense	novelGene_ENSMUSG00000095690.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	141	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGCGGAACCGGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	7374806	7376499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_7376024_7376067
46823	chr15	+	2749	11	ISM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	21300	2	254	-2	3prime_fragment	FALSE	canonical	3	67	junction_10	8.91291198206288	2	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTCTTTTTATTGCA	NA	False	NA	NA	False	NA	NA	NA	86119959	86382702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
46824	chr9	+	1369	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9319.15800582327	4	71	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082110_64082278_64082475_64082583_64082871_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085106_64085300_64085504
46825	chr10	-	3670	28	NNC	ENSMUSG00000018166.9	novel	6016	28	NA	NA	-896	-2187	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	19.9326713076681	2	80	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCAGTGCTTCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	128426417	128405578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407226_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412725_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505_128419572_128420179_128420306_128420880_128421068_128422008_128422161_128426345
46826	chr2	+	2482	7	NNC	ENSMUSG00000014077.14	novel	2609	7	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	70.3548545272859	1	74	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTGGTTGAGTTTTACC	NA	False	NA	NA	False	NA	NA	NA	119378287	119417505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119378399_119391225_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
46827	chr13	-	1794	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	27	84	27	-84	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	1	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTATCCCTGAATCAA	NA	False	NA	NA	False	NA	NA	NA	97334838	97312922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
46828	chr9	-	3456	10	NIC	ENSMUSG00000032786.17	novel	3399	11	NA	NA	0	-38	intron_retention	FALSE	canonical	3	139	junction_6	18.6196497825467	12	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTCTTTATATGTGAAAT	8565	False	NA	NA	False	NA	NA	NA	106125066	106111178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106111397_106112586_106112750_106113638_106115439_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
46829	chr5	-	2447	18	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	-81	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	344.794317104076	1	105	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTGTATGTCCCTT	8377	False	NA	NA	False	NA	NA	NA	137305816	137293970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294580_137294728_137294886_137295036_137295231_137295340_137295484_137295595_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297131_137297813_137297935_137298015_137298109_137300460_137300577_137300788_137300936_137301173_137301301_137305307_137305448_137305685
46830	chr3	+	2335	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	56	4984	-31	1281	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	165	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAGATTTGCTCATTTT	NA	False	NA	NA	False	NA	NA	NA	102903079	102910791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
46831	chr12	-	1604	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1835	-3	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	74.9526572340586	274	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	9507	False	NA	NA	False	NA	NA	NA	110805526	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
46832	chr3	+	2696	10	FSM	ENSMUSG00000032952.12	ENSMUST00000047285.7	2799	10	101	2	101	0	multi-exon	FALSE	canonical	3	54	junction_7	8.73053390247253	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGCCTGTCGTCAC	NA	False	NA	NA	False	NA	NA	NA	103717044	103729339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
46833	chr15	-	1814	8	ISM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	2364	1162	2344	0	3prime_fragment	FALSE	canonical	1	385	junction_5	254.40093697684	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	NA	False	NA	NA	NA	98429781	98416700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600
46834	chr3	+	2115	5	NNC	ENSMUSG00000032902.2	novel	4426	5	NA	NA	10793	-1886	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.319955787143	1	83	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACGGTATGAGAATCTTA	NA	False	NA	NA	False	NA	NA	NA	104556776	104563892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_104556834_104558221_104558346_104560057_104560904_104562763_104563497_104563537
46835	chr3	-	1731	10	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-4	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	861.752019556599	3	81	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTCTCTGCTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	108352518	108333889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335644_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
46836	chr7	+	2443	13	NIC	ENSMUSG00000040268.18	novel	2301	13	NA	NA	15	139	combination_of_known_junctions	FALSE	canonical	3	18	junction_12	74.0793024775177	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTACATGATTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	130467654	130513937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511389_130512561
46838	chr17	-	2310	8	NIC	ENSMUSG00000024118.15	novel	2160	9	NA	NA	-12	-8	intron_retention	FALSE	canonical	3	185	junction_7	20.9888211256587	145	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTGGAGAGATGGCTTG	3362	False	NA	NA	False	NA	NA	NA	24439739	24434220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
46840	chr2	+	2216	14	NIC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-20	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	201.163303204668	1	88	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAGATATTTTACTCATT	NA	False	NA	NA	False	NA	NA	NA	174257623	174269291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174257828_174261819_174261939_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
46842	chr8	-	1386	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	976.359223510145	6	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTCCTAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	108315081	108307011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307825_108309067_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
46845	chr1	-	3088	7	NNC	ENSMUSG00000022995.17	novel	1971	13	NA	NA	-2270	841	intron_retention	FALSE	canonical	0	0	junction_4	146.805615999147	1	167	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACCGACATTGGCTCAT	NA	False	NA	NA	False	NA	NA	NA	181747195	181731123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740974_181745822_181745881_181746002_181746149_181746889
46846	chr11	+	1718	14	NIC	ENSMUSG00000004018.10	novel	2724	14	NA	NA	4	-5	combination_of_known_junctions	FALSE	canonical	2	6	junction_12	67.663367939726	703	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCAAGTCTAGTCATTAA	NA	False	NA	NA	False	NA	NA	NA	26337205	26421871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420806_26420949_26421324
46847	chr8	-	3273	2	NNC	ENSMUSG00000079042.11	novel	945	3	NA	NA	5364	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	33	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATATATTTATGAGTTT	NA	False	NA	NA	False	NA	NA	NA	65484460	65481077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_65483843_65483952
46848	chr6	-	1707	5	NIC	ENSMUSG00000032641.19	novel	498	4	NA	NA	-128	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	26.9478663348325	208	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	NA	False	NA	NA	NA	134874175	134846070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592_134864749_134874124
46849	chr7	-	1879	6	FSM	ENSMUSG00000030689.16	ENSMUST00000206349.2	883	6	0	-996	0	1	multi-exon	FALSE	canonical	1	10	junction_1	371.089423185302	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGTTTTGTGCTTGGAT	9172	False	NA	NA	False	NA	NA	NA	126461032	126450755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126452164_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
46851	chr14	-	1241	6	NNC	ENSMUSG00000015759.12	novel	789	6	NA	NA	28	-110	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	210.694660587306	21	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAGATGCTTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	47025763	47013133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47013476_47013557_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
46852	chr1	-	1982	14	FSM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	46	377	0	0	multi-exon	TRUE	canonical	3	65	junction_13	32.5556419455247	337	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	NA	False	NA	NA	NA	169358987	169325879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
46853	chrX	-	3039	16	FSM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	45	65	-38	-51	multi-exon	FALSE	canonical	3	263	junction_13	28.3953047762008	16	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATGTAATCTGGTAGC	NA	False	NA	NA	False	NA	NA	NA	74918743	74829324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
46855	chr14	+	3170	12	NIC	ENSMUSG00000004561.15	novel	1844	13	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	21	junction_6	46.5385293143628	1	130	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGGTGGATGTTCTGATT	NA	False	NA	NA	False	NA	NA	NA	52122387	52129323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126855_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
46856	chr15	+	1858	8	Antisense	novelGene_ENSMUSG00000018169.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	338	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGGGCCACTTAGCTCCT	NA	False	NA	NA	False	NA	NA	NA	78640081	78657693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_78640845_78641496_78641586_78643422_78643559_78645005_78645092_78648512_78648671_78651019_78651125_78651345_78651393_78657219
46857	chr6	+	1531	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	-57	1	-11	0	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	2169	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGATTCTGGCTGTACT	NA	False	NA	NA	False	NA	NA	NA	124908337	124913107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
46858	chr11	+	2656	11	NNC	ENSMUSG00000057522.16	novel	3063	10	NA	NA	-16	-397	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	82.0241427873526	322	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTACTGTGTGGTATCTCT	NA	False	NA	NA	False	NA	NA	NA	95304889	95383835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95304992_95305035_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
46859	chr17	+	1228	7	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	19	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1958.24672148895	2	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3055	False	NA	NA	False	NA	NA	NA	35816933	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817043_35817098_35817381_35819999_35820121_35820304_35820332_35820383_35820436_35820877_35821037_35821184
46862	chr11	+	1042	4	ISM	ENSMUSG00000040463.17	ENSMUST00000144374.2	856	7	1500	-545	79	-218	3prime_fragment	FALSE	canonical	3	2711	junction_3	155.478472965088	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72340542	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72340660_72340818_72340921_72341451_72341601_72341702
46864	chr3	-	1559	14	NNC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	320.814256201698	2228	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88857256	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88854848_88854945_88857174
46865	chr12	-	1506	5	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	21	-1	intron_retention	FALSE	canonical	3	10789	junction_2	2477.09618303367	21	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTGGTTGTAGTAACT	NA	False	NA	NA	False	NA	NA	NA	28685931	28681085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28681774_28683766_28684352_28685414_28685487_28685578_28685663_28685854
46866	chr11	+	1149	11	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	791.595256428435	16	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4518	False	NA	NA	False	NA	NA	NA	106146961	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152805_106153074_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
46867	chr9	-	5236	37	ISM	ENSMUSG00000041528.16	ENSMUST00000178267.8	4309	39	102	416	-7	132	intron_retention	FALSE	canonical	3	35	junction_16	13.3083098517848	3	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTACGCCCACCCCATC	NA	False	NA	NA	False	NA	NA	NA	107956472	107929291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107929320_107929412_107929508_107929643_107929787_107933235_107933321_107933555_107933632_107933719_107933909_107934014_107934155_107935361_107935447_107935534_107935623_107935707_107935796_107935981_107936057_107936861_107937040_107938952_107939061_107939760_107939845_107940069_107940216_107940681_107940881_107941119_107941227_107942884_107942987_107943483_107943605_107943821_107943894_107944053_107944116_107944293_107944394_107944594_107944713_107945320_107945395_107945465_107945559_107945674_107945801_107946189_107946295_107946370_107946486_107946874_107947001_107947146_107947215_107947415_107947503_107947743_107947830_107947924_107947980_107948349_107948445_107948576_107948657_107954547_107954633_107954920
46868	chrX	-	2249	10	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	17	-18	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	92.9049693683461	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCGTTCCGGTTTGAAGC	NA	False	NA	NA	False	NA	NA	NA	36373958	36355348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36372567_36372675_36372800_36372908_36373728
46869	chr6	-	4488	24	NIC	ENSMUSG00000029822.16	novel	4039	22	NA	NA	34	-89	combination_of_known_junctions	TRUE	canonical	2	5	junction_11	3.96439732175821	32	39	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTTTGACTCGGATGT	NA	False	NA	NA	False	NA	NA	NA	50433107	50272755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50310165_50310274_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50432804
46870	chr5	+	1098	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	212	-22	-212	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	10	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
46871	chrX	-	1745	9	NNC	ENSMUSG00000057836.13	novel	1645	9	NA	NA	-13	-6	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	486.240279465821	139	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAGACTTGTTGGCATG	NA	False	NA	NA	False	NA	NA	NA	72140642	72129906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138401_72138689_72140586
46872	chr9	+	1586	10	NNC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	802.656715208398	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAATGAATGATGTAAT	NA	False	NA	NA	False	NA	NA	NA	54493776	54511226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493784_54499683_54499762_54502449_54502565_54503285_54503471_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
46873	chr16	+	4715	3	Antisense	novelGene_ENSMUSG00000036304.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAACCCGCAGGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	43785552	43794153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_43789779_43791763_43791929_43793829
46877	chr4	-	3981	12	NNC	ENSMUSG00000028838.12	novel	4126	11	NA	NA	15	-12	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	14.4032824541681	1	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCACTCACGCCCGGGC	7038	False	NA	NA	False	NA	NA	NA	134099854	134083694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268_134099674_134099791
46878	chr16	-	1773	19	NIC	ENSMUSG00000022771.18	novel	3088	20	NA	NA	-3	28	combination_of_known_junctions	FALSE	canonical	3	16	junction_18	172.831083238326	37	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGCTGTGTGCACACTC	NA	False	NA	NA	False	NA	NA	NA	16929103	16906441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16929006
46881	chr5	-	2399	17	NNC	ENSMUSG00000029472.14	novel	2404	17	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	593.03030065925	1	134	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCAGTTTGTCTGAAGTGG	NA	False	NA	NA	False	NA	NA	NA	122959348	122925797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940877_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
46882	chr19	-	2736	16	NIC	ENSMUSG00000024862.17	novel	2940	16	NA	NA	10	-195	combination_of_known_junctions	FALSE	canonical	3	36	junction_15	17.0507738501479	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGCCCCTCCCAGGCAT	NA	False	NA	NA	False	NA	NA	NA	5168315	5157970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
46883	chr15	-	1689	5	NNC	ENSMUSG00000022314.11	novel	3956	14	NA	NA	23648	-364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	331.141491661797	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTGGAACATACTCAGT	NA	False	NA	NA	False	NA	NA	NA	51831258	51825999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51827030_51827293_51827644_51828350_51828435_51829977_51830128_51831183
46884	chr7	-	1586	6	FSM	ENSMUSG00000035227.8	ENSMUST00000209032.2	1610	6	25	-1	-10	0	multi-exon	FALSE	canonical	2	16	junction_4	1023.35436677624	2346	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGTCTTGAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	99508093	99488109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99505619_99505722_99507970
46885	chr7	-	1314	3	ISM	ENSMUSG00000066568.13	ENSMUST00000205519.2	647	7	19832	-1213	2187	-62	3prime_fragment	FALSE	canonical	3	635	junction_2	30.5	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAACTATAGTGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	34050733	34044149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_34045384_34047350_34047408_34050710
46886	chr14	-	2103	7	NNC	ENSMUSG00000021891.9	novel	3946	6	NA	NA	0	781	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_4	123.583642391162	503	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGCACACTAACCGGGTGA	NA	False	NA	NA	False	NA	NA	NA	31216987	31200760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31201768_31204747_31204890_31209527_31209699_31211125_31211277_31214278_31214414_31215553_31215922_31216858
46887	chr5	+	2359	22	NNC	ENSMUSG00000039178.10	novel	2273	21	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	26.0989743588715	18	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAGATATCTCTAATAAT	NA	False	NA	NA	False	NA	NA	NA	53966998	54061306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_53967201_53986691_53986765_53987796_53987843_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54021660_54021778_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
46888	chr17	-	1898	12	NIC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-110	3	intron_retention	FALSE	canonical	3	510	junction_6	61.9898685403743	2530	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGCGAGTCATCACTG	NA	False	NA	NA	False	NA	NA	NA	57318398	57310401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57310632_57310720_57310812_57310914_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
46889	chr4	-	1812	8	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-6437	-432	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	393.652286223489	1	98	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAACCTTTGTAAGGGCCT	NA	False	NA	NA	False	NA	NA	NA	126080377	126061272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070041_126072230_126072351_126073700_126074608_126080227
46891	chr8	+	1926	10	FSM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	67	0	13	0	multi-exon	TRUE	canonical	0	0	junction_3	369.398142461925	535	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGATCTGGTTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	106024361	106032002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064_106031110_106031204
46892	chr17	+	2087	12	NIC	ENSMUSG00000048440.17	novel	2227	13	NA	NA	-5	0	combination_of_known_junctions	TRUE	canonical	3	16	junction_2	20.9331876957963	3	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGTCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	32755537	32770771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_32755630_32755971_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
46893	chr7	+	1177	9	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	861.692375502998	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8497	False	NA	NA	False	NA	NA	NA	27869100	27878694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875421_27876591_27876701_27877629_27877743_27878322_27878469_27878555
46894	chr8	-	528	1	Intergenic	novelGene_1610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAGTATTGAGGCTAGC	NA	False	NA	NA	False	NA	NA	NA	27755340	27754812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_27754800_27755300
46895	chr8	-	1231	1	Intergenic	novelGene_1609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCCTGCCCCCCAGGCC	NA	False	NA	NA	False	NA	NA	NA	27752405	27751174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_27751200_27752400
46896	chr19	-	1795	1	NIC	ENSMUSG00000024847.16	novel	1378	7	NA	NA	3655	-562	mono-exon	FALSE	NA	NA	NA	NA	NA	3	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCTTCCACATCGAGAT	7674	False	NA	NA	False	NA	NA	NA	4167803	4166008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4166000_4167800
46897	chr17	+	1900	10	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1794	3522	1768	-3522	internal_fragment	FALSE	canonical	3	15	junction_6	11.0699236617306	28	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGAGGACCTAAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	57184270	57192382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083
46899	chr18	-	1831	12	NIC	ENSMUSG00000024357.11	novel	1703	10	NA	NA	-1	-10	combination_of_known_junctions	FALSE	canonical	2	3	junction_10	63.1377871427979	25	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGACAATGGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	35631923	35399458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35625911_35626020_35626197_35626287_35631843
46901	chr2	-	2320	14	NIC	ENSMUSG00000009566.13	novel	2273	15	NA	NA	-3	0	intron_retention	FALSE	canonical	3	280	junction_7	39.6084385247243	6	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTATTCTCCTAGCTCCC	NA	False	NA	NA	False	NA	NA	NA	32584150	32572620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
46902	chr13	-	1496	10	NIC	ENSMUSG00000021417.16	novel	1426	10	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	51.9781530555072	416	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	NA	NA	NA	35178099	35161730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177996
46903	chr3	-	2911	7	NNC	ENSMUSG00000027881.15	novel	3026	6	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	184.02332279723	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAATCCTTTATCCTGG	6880	False	NA	NA	False	NA	NA	NA	108819013	108810134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818450_108818678_108818779
46904	chr16	-	1278	5	NNC	ENSMUSG00000040681.17	novel	261	5	NA	NA	20	646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2733.31368260213	17	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	NA	False	NA	NA	NA	95928909	95922787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928122_95928240_95928352_95928404_95928752
46905	chr9	+	2936	9	Antisense	novelGene_ENSMUSG00000088577.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	2.64575131106459	28	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCGCCGAAGAAAGCCCG	NA	False	NA	NA	False	NA	NA	NA	108280690	108309013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108280803_108280916_108283054_108283809_108283914_108289691_108289780_108290161_108290211_108294520_108294687_108298590_108298760_108305613_108305682_108308970
46906	chr11	+	1414	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	11	-281	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4922.54099424271	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAATGCCAAATATATC	3046	False	NA	NA	False	NA	NA	NA	75623749	75656390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642933_75647642_75647850_75650117_75650255_75655445_75655997_75656265
46907	chr1	+	2162	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	2	2	2	-2	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	111	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCGTTATTTATTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	136343010	136367894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
46908	chr7	+	884	8	ISM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	15851	407	15776	-407	3prime_fragment	FALSE	canonical	3	3305	junction_1	259.420704726543	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	137055193	137069916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
46909	chr18	+	2198	6	Antisense	novelGene_ENSMUSG00000052102.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	119	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTAGTGTAGAGATAACAA	2835	False	NA	NA	False	NA	NA	NA	38460605	38471275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_38462025_38463536_38463712_38465018_38465222_38466217_38466392_38468074_38468173_38471146
46910	chr5	-	3321	8	NIC	ENSMUSG00000029512.12	novel	5213	28	NA	NA	-868	-1	intron_retention	FALSE	canonical	2	7	junction_7	389.060196800821	1	173	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110938200	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936739_110936813_110936924_110938077
46911	chr2	-	1535	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	49	14	1	-14	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCATAGTGTGTGGCTTCG	NA	False	NA	NA	False	NA	NA	NA	25114665	25112185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
46912	chr12	+	2525	7	NNC	ENSMUSG00000021175.16	novel	2957	10	NA	NA	28210	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	72.8684126048836	3	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCACCTGTCTGTGGCA	4950	False	NA	NA	False	NA	NA	NA	117835832	117842445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117840913
46913	chr17	+	1751	3	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	67173	-5	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	117.5	1	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTACTTGTGTGGTTTTGG	5045	False	NA	NA	False	NA	NA	NA	43394631	43400075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_43394712_43396226_43396456_43398633
46914	chr8	+	2111	2	ISM	ENSMUSG00000031903.8	ENSMUST00000212059.2	556	5	2586	-1832	2586	0	3prime_fragment	FALSE	canonical	3	124	junction_1	0	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGTCCTGCTCTGA	NA	False	NA	NA	False	NA	NA	NA	106887720	106891347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106887941_106889456
46915	chr1	-	2333	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	11	-59	3	59	multi-exon	FALSE	canonical	3	372	junction_2	205.630737002035	477	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGCAGCTGCACAAGCC	NA	False	NA	NA	False	NA	NA	NA	165462087	165419749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
46918	chr2	+	3370	11	ISM	ENSMUSG00000059316.3	ENSMUST00000080065.3	4054	13	3123	49	-1241	-49	3prime_fragment	FALSE	canonical	3	148	junction_2	12.2245654319489	124	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCACCACCCTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	29695768	29707485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_29696023_29697367_29697527_29699673_29699744_29699847_29699940_29700872_29700983_29701197_29701408_29701580_29701708_29702276_29702415_29702563_29702729_29702799_29702947_29705587
46919	chr16	-	813	9	NNC	ENSMUSG00000022881.16	novel	501	6	NA	NA	-3	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	758.314650639825	8	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGCATTATTGTGAATT	NA	False	NA	NA	False	NA	NA	NA	22946490	22933609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22933674_22934188_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22940979_22941051_22943285_22943365_22946149_22946292_22946434
46920	chr1	-	1741	7	ISM	ENSMUSG00000026171.13	ENSMUST00000135140.8	1507	10	2258	7	-517	-2	intron_retention	FALSE	canonical	3	94	junction_3	6.21154838452807	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCTAGCCTATGTGGTAT	NA	False	NA	NA	False	NA	NA	NA	74638273	74632913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688
46923	chr11	+	1310	9	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	192	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	233.502007486017	36	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1422	False	NA	NA	False	NA	NA	NA	101010955	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015858_101015949_101016028_101016191_101016857
46925	chr6	-	2196	4	Antisense	novelGene_ENSMUSG00000053119.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGAGTTCATGTGTGC	NA	False	NA	NA	False	NA	NA	NA	71558560	71538037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_71538060_71551097_71551219_71554712_71554827_71556621
46926	chr11	-	2906	11	FSM	ENSMUSG00000020474.12	ENSMUST00000020767.4	2924	11	15	3	15	-3	multi-exon	FALSE	canonical	3	32	junction_5	4.04969134626332	116	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTATAGTTTTACAAGT	395	False	NA	NA	False	NA	NA	NA	5788001	5777863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785587_5785700_5785800_5786193_5786375_5787560
46927	chr11	-	2489	3	NNC	ENSMUSG00000018442.14	novel	1466	7	NA	NA	-7516	-5071	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	92	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACACCGGCTCCTCCGAA	NA	False	NA	NA	False	NA	NA	NA	70918183	70910462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70910549_70915382_70915536_70915933
46928	chr11	-	1771	1	Antisense	novelGene_ENSMUSG00000020840.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTATGGACAGTTATATT	3707	False	NA	NA	False	NA	NA	NA	76843342	76841571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_76841600_76843300
46929	chr12	+	1833	9	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	141.01418368377	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGCAGTGATGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	109506883	109538155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109516015_109516087_109516246_109524670_109524755_109537824
46930	chr4	-	1764	8	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-12	0	intron_retention	FALSE	canonical	3	19	junction_4	107.346853418139	4	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	NA	False	NA	NA	NA	147952992	147945247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947407_147949645_147949728_147950111_147950472_147950691_147950877_147952825
46931	chr3	+	1935	6	NNC	ENSMUSG00000041355.14	novel	569	6	NA	NA	-1007	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1875.56299814216	2	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCGATGTGTTTGTCTTG	2550	False	NA	NA	False	NA	NA	NA	88485907	88495720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488346_88491174_88491193_88494171_88494250_88495187
46932	chr16	-	2851	17	Antisense	novelGene_ENSMUSG00000043065.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCCGCCACGGGGGAAC	NA	False	NA	NA	False	NA	NA	NA	44207566	44167812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_44167868_44175800_44175899_44176507_44176556_44178122_44178265_44185944_44186047_44186895_44186998_44187993_44188114_44190243_44190384_44190600_44190736_44191044_44191305_44192894_44193026_44197157_44197384_44199216_44199702_44202367_44202565_44205032_44205135_44205979_44206068_44207146
46933	chrX	-	2251	16	NNC	ENSMUSG00000031109.17	novel	636	5	NA	NA	-2	-1008	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	19.0150817335433	30	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTAGGAAGAGTTATTAT	NA	False	NA	NA	False	NA	NA	NA	48377138	48100901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_48101129_48102009_48102058_48102373_48102460_48107659_48107772_48112003_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
46935	chr9	+	4260	6	NNC	ENSMUSG00000035878.14	novel	5110	5	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3.31058907144937	23	25	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTTTACCTTTTGG	NA	False	NA	NA	False	NA	NA	NA	54824594	54857198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54825143_54827757_54828109_54829478_54829619_54844422_54844607_54853349_54854217_54855028
46936	chr8	-	1206	12	NIC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	-17	0	intron_retention	FALSE	canonical	3	3561	junction_9	290.154504296653	7	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321075	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
46937	chr6	+	1235	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	-38	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1180.04724481692	14	4	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAAAATTTTGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	124689260	124693905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124689415_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692999_124693568
46938	chr5	+	3709	4	FSM	ENSMUSG00000038181.17	ENSMUST00000121863.5	3715	4	9	-3	9	3	multi-exon	FALSE	canonical	3	23	junction_2	9.8770215933527	29	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTTTAGGTCTAGGGAG	NA	False	NA	NA	False	NA	NA	NA	24791756	24797485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_24793299_24794094_24794660_24795306_24795490_24796066
46939	chr1	-	4264	5	NIC	ENSMUSG00000016481.16	novel	913	6	NA	NA	1	613	intron_retention	FALSE	canonical	3	121	junction_4	64.161417534216	2	89	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTCAACATGAAAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	194813868	194796349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
46940	chr13	-	1752	12	FSM	ENSMUSG00000006191.18	ENSMUST00000131792.8	2019	12	4	263	0	-263	multi-exon	FALSE	canonical	3	157	junction_8	15.5292313007885	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTGAATAGGCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	30039622	29658113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
46941	chr6	+	990	7	Antisense	novelGene_ENSMUSG00000023456.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.372677996249965	1	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGCTCTCTCCACTGGC	NA	False	NA	NA	False	NA	NA	NA	124788027	124791121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124788353_124788481_124788564_124788840_124788933_124789368_124789502_124789585_124789669_124789752_124789877_124790970
46942	chr4	-	1989	3	NNC	ENSMUSG00000028840.11	novel	1994	3	NA	NA	8	-12	intron_retention	FALSE	canonical	3	7	junction_2	330.5	1181	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTAACTACATTTATCA	7676	False	NA	NA	False	NA	NA	NA	133972895	133970629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133972242_133972335_133972399_133972581
46943	chr18	+	1176	8	NNC	ENSMUSG00000042705.10	novel	1610	7	NA	NA	-4	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	484.581915317794	28	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTAAACTCAAGCGTAC	NA	False	NA	NA	False	NA	NA	NA	47091916	47221053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094_47220231_47220621
46944	chr7	+	2515	21	ISM	ENSMUSG00000040811.16	ENSMUST00000117338.8	2765	22	2933	-218	-1816	-3	3prime_fragment	FALSE	canonical	3	14	junction_1	46.9870992933167	210	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGATGTCTGGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	18913278	18940400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_18913371_18913450_18913575_18913675_18913781_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
46945	chr1	-	2180	1	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	68299	764	3823	443	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGTGTGTGATTTGAA	NA	False	NA	NA	False	NA	NA	NA	30844363	30842183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_30842200_30844400
46946	chr7	-	2173	13	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	-6	-61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	454.673959802211	1	118	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATACGGTGTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	143102835	143067385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143075101_143075189_143077893_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143102763
46947	chr6	-	2210	13	FSM	ENSMUSG00000056698.12	ENSMUST00000114069.8	2164	13	-55	9	-2	3	multi-exon	FALSE	canonical	1	3	junction_12	16.532795690183	121	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGGTATTTTCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	72575380	72542913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72575304
46948	chr16	+	1062	6	ISM	ENSMUSG00000022724.16	ENSMUST00000160571.2	2244	10	8229	616	-7240	7	internal_fragment	FALSE	canonical	3	248	junction_5	27.6217305757623	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAGCTTGTGCAAAATCC	NA	False	NA	NA	False	NA	NA	NA	59300659	59312038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567
46949	chr1	+	1190	2	Genic_Genomic	ENSMUSG00000101188.2	novel	1218	1	NA	NA	-15	556	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	60743075	60744864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_60744009_60744607
46950	chr17	-	1518	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-14	0	intron_retention	TRUE	canonical	3	306	junction_7	19.0930146880094	976	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	24382681	24374806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
46951	chr9	+	3813	20	FSM	ENSMUSG00000023186.15	ENSMUST00000001544.12	4157	20	42	302	38	273	multi-exon	TRUE	canonical	2	10	junction_6	2.97449918967259	32	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGGAAAATAGAAAGTACTA	NA	False	NA	NA	False	NA	NA	NA	38629605	38654331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_38629684_38630553_38630630_38633668_38633727_38633841_38634045_38634322_38634546_38634662_38634839_38635141_38635257_38638238_38638409_38639049_38639139_38639289_38639435_38639917_38639998_38645160_38645276_38645992_38646158_38646854_38646956_38647247_38647502_38649038_38649105_38649198_38649298_38649781_38649913_38652393_38652521_38652989
46954	chr5	+	1541	5	NNC	ENSMUSG00000041453.13	novel	1067	6	NA	NA	-1	-47	intron_retention	FALSE	canonical	3	24	junction_1	5308.41459383119	29	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCATGGCCTAATGTAC	NA	False	NA	NA	False	NA	NA	NA	146769954	146772748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_146769982_146770457_146770551_146770993_146771073_146771257_146772525_146772673
46955	chr5	-	1046	4	NNC	ENSMUSG00000066551.13	novel	604	4	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3577.42312596962	6	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTATTGTTGTCCTTT	6765	False	NA	NA	False	NA	NA	NA	148989849	148985042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985655_148987120_148987251_148987397_148987562_148989709
46956	chr4	+	3279	1	Antisense	novelGene_ENSMUSG00000012117.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTACAGGAAGTAGCCGG	NA	False	NA	NA	False	NA	NA	NA	133697035	133700314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133697000_133700300
46957	chr7	+	2147	7	NIC	ENSMUSG00000037706.18	novel	1533	8	NA	NA	3	-1	intron_retention	FALSE	canonical	3	5787	junction_3	294.804266515184	1	107	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAGGCATGCTAATGGGA	NA	False	NA	NA	False	NA	NA	NA	142606478	142621652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_142606804_142616229_142616345_142618945_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
46958	chr4	-	2292	2	ISM	ENSMUSG00000028857.17	ENSMUST00000132713.2	587	4	506	-857	506	0	intron_retention	FALSE	canonical	3	766	junction_1	0	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	132996921	132993355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132994233_132995506
46959	chr4	-	2559	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	0	-1	intron_retention	FALSE	canonical	3	24	junction_9	11.5512812607707	169	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTCAGTGTCTGTTCCT	8703	False	NA	NA	False	NA	NA	NA	152112094	152104233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152111517_152111999
46960	chr11	-	2414	9	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-1	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	192.745298256533	1	105	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGACACAAAACTACTACATT	974	False	NA	NA	False	NA	NA	NA	79145498	79130224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135313_79135375_79136991_79137128_79139216_79139486_79141806_79141976_79145178
46961	chr11	-	1943	6	FSM	ENSMUSG00000020553.9	ENSMUST00000020864.9	2723	6	21	759	21	-759	multi-exon	FALSE	canonical	3	31	junction_1	5.78273291792038	138	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGTGCTGTCTCCCTC	NA	False	NA	NA	False	NA	NA	NA	89893699	89874249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_89875583_89876918_89876987_89878021_89878194_89879520_89879601_89881896_89882015_89893527
46962	chr2	+	2683	1	NIC	ENSMUSG00000084919.2	novel	630	3	NA	NA	1	-449	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	19	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTACTTCTCCTTCCAC	NA	False	NA	NA	False	NA	NA	NA	162232733	162235416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_162232700_162235400
46964	chr18	+	1408	2	FSM	ENSMUSG00000002477.6	ENSMUST00000234728.2	439	2	-44	-925	25	925	multi-exon	FALSE	canonical	3	1916	junction_1	0	11	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTTCATGTATGCTAAGG	14	True	NA	NA	False	NA	NA	NA	10617820	10624932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_10617927_10623630
46965	chr7	-	1496	10	NIC	ENSMUSG00000095538.2	novel	1690	9	NA	NA	-71	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	289.223011908257	5	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGTTTCGGCCTCTGT	NA	False	NA	NA	False	NA	NA	NA	26880582	26867855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26879593_26879705_26880124_26880259_26880346
46966	chr11	+	2556	21	NNC	ENSMUSG00000020333.18	novel	5804	21	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	14.2832069228167	92	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATATATTGTACTTAATT	NA	False	NA	NA	False	NA	NA	NA	54194652	54252361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215889_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
46967	chrX	+	1037	3	ISM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	1204	0	-424	0	3prime_fragment	FALSE	canonical	3	11014	junction_2	384.5	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36060507	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_36060983_36061388_36061530_36062039
46968	chr12	-	2184	17	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-4	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	72.0533656396424	4	86	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	84664148	84649304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651801_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84664056
46969	chr6	-	1694	7	NNC	ENSMUSG00000038028.10	novel	3651	6	NA	NA	-3	-968	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	395.729986508759	97	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAATGGTTAGGCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	127086523	127063046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_127063273_127064271_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
46970	chr3	+	3438	11	NNC	ENSMUSG00000028086.16	novel	2221	11	NA	NA	244	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	34.4831843077173	52	70	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGCCTGTTTCTTCCACT	873	False	NA	NA	False	NA	NA	NA	84859696	84886505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_84859947_84862181_84862265_84865810_84865953_84872554_84872690_84874746_84874871_84876471_84876609_84878102_84878217_84879681_84879864_84881709_84881936_84883480_84883656_84884635
46971	chr11	-	2262	5	ISM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	10	1020	-1	-1020	intron_retention	FALSE	canonical	3	110	junction_3	8.64580823289529	10	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGAGTCATTTTTAG	6311	False	NA	NA	False	NA	NA	NA	45846311	45838689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882
46972	chr7	-	1332	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-2	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9227.34256524198	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATTTAAGGGGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	126398315	126394421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395302_126395730_126395928_126396025_126396081_126396508_126396721_126396815_126396940_126398216
46973	chr4	-	1799	9	NIC	ENSMUSG00000006398.16	novel	1793	10	NA	NA	61	-8	intron_retention	FALSE	canonical	3	1488	junction_3	110.596606525698	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTTATGTCCCAGCATC	NA	False	NA	NA	False	NA	NA	NA	118294488	118290105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
46975	chr18	+	1255	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	5	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTCCCCCCAGTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	48179718	48181397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180364_48180787
46976	chr6	+	2176	11	FSM	ENSMUSG00000030089.16	ENSMUST00000044019.16	2412	11	236	0	236	0	multi-exon	FALSE	canonical	3	6	junction_2	19.246038553427	173	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGGTGTCCTCCATCCTTC	NA	False	NA	NA	False	NA	NA	NA	90581942	90623394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_90581991_90588860_90589164_90601793_90601902_90603361_90603434_90610592_90610738_90612231_90612379_90613838_90613984_90617865_90617946_90619192_90619328_90621066_90621216_90622550
46978	chr2	-	2059	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	14	31	14	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	144	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTTTTATTTTTGCTG	2262	False	NA	NA	False	NA	NA	NA	30176332	30174273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30174300_30176300
46979	chr7	+	3160	1	ISM	ENSMUSG00000055320.19	ENSMUST00000239442.2	9962	14	223049	1277	62735	-1277	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTTTTCTCTGTGAATC	1562	False	NA	NA	False	NA	NA	NA	112501575	112504735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_112501600_112504700
46980	chr15	+	2205	15	FSM	ENSMUSG00000006369.15	ENSMUST00000109432.4	2273	15	61	7	61	-7	multi-exon	FALSE	canonical	3	356	junction_14	63.5701845785187	54	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCATGCCTCTTGTACC	NA	False	NA	NA	False	NA	NA	NA	85090266	85136079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85135645
46981	chr18	-	2616	7	NIC	ENSMUSG00000063889.17	novel	2931	9	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	28.095076674274	35	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	8	True	NA	NA	False	NA	NA	NA	3337561	3266355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3268130_3273421_3273579_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
46982	chr7	+	2762	20	FSM	ENSMUSG00000055116.9	ENSMUST00000047321.9	2908	20	137	9	45	-9	multi-exon	FALSE	canonical	3	63	junction_10	14.0300429530047	101	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTATAAGTACTGTTCCC	3884	False	NA	NA	False	NA	NA	NA	112806808	112913324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_112806852_112833830_112833904_112873832_112873961_112878663_112878790_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
46983	chr2	-	1521	8	NNC	ENSMUSG00000027496.16	novel	1862	9	NA	NA	1485	-217	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	460.957521616357	1	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATAGACTTTGACTTTTA	NA	False	NA	NA	False	NA	NA	NA	172210941	172198332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205666_172206361_172206417_172208841_172209092_172210905
46985	chrX	+	4195	20	ISM	ENSMUSG00000031209.15	ENSMUST00000113838.8	4611	22	6499	-3	6461	0	3prime_fragment	FALSE	canonical	2	5	junction_3	2.90572078775627	26	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGATTTTTGTGATTC	NA	False	NA	NA	False	NA	NA	NA	95506494	95618091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_95506698_95509415_95509661_95513550_95513764_95514338_95514522_95516417_95516673_95518983_95519153_95527636_95527774_95529832_95529965_95541453_95541663_95542592_95542744_95544112_95544326_95571115_95571330_95573006_95573147_95573899_95574032_95597448_95597556_95598440_95598667_95601115_95601256_95601644_95601808_95614585_95614631_95617173
46986	chr15	-	2424	17	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	166	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_15	30.7405981561843	212	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	7279	False	NA	NA	False	NA	NA	NA	102111681	102085433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102110878_102111010_102111571
46988	chr11	-	2950	6	ISM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	31	0	31	0	intron_retention	FALSE	canonical	3	63	junction_1	5.41848687365763	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	NA	False	NA	NA	NA	121120100	121113413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153
46989	chr7	-	2654	9	FSM	ENSMUSG00000040703.12	ENSMUST00000043314.10	2745	9	93	-2	-2	2	multi-exon	FALSE	canonical	3	20	junction_7	4.7368238303741	62	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACCCCCTCTGCCTGTGT	1697	False	NA	NA	False	NA	NA	NA	25515985	25501897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_25503185_25503340_25503483_25505295_25505484_25507468_25507611_25508603_25508784_25508862_25509024_25511026_25511177_25514309_25514476_25515747
46990	chr8	+	1116	8	NNC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	-34	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	386.835777000198	53	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	NA	False	NA	NA	NA	71819551	71822375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71819723_71819878_71820014_71820174_71820338_71820413_71820493_71820602_71820763_71821490_71821522_71821775_71821948_71822170
46991	chr17	-	1942	9	Antisense	novelGene_ENSMUSG00000089764.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	829	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGCCTGAAGCCCGCACG	9631	False	NA	NA	False	NA	NA	NA	26499933	26471924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_26472065_26472946_26473019_26474004_26474098_26476897_26476999_26485256_26485363_26486183_26486331_26494645_26494824_26496518_26496622_26498931
46992	chr13	+	3575	1	Intergenic	novelGene_1409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACACTGGCCTTGGCCT	NA	False	NA	NA	False	NA	NA	NA	64112966	64116541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_64113000_64116500
46994	chr15	-	2399	4	NIC	ENSMUSG00000023755.11	novel	1604	8	NA	NA	54	-5	intron_retention	FALSE	canonical	3	214	junction_2	2.49443825784929	9	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACGTTTGTGTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	98779103	98775663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98777197_98777285_98777369_98777657_98777726_98778388
46995	chr2	-	3790	15	FSM	ENSMUSG00000026873.10	ENSMUST00000028232.7	3741	15	-50	1	0	-1	multi-exon	FALSE	canonical	3	18	junction_3	4.03871569806491	47	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGCGTGTCCTTGGAG	3637	False	NA	NA	False	NA	NA	NA	34804038	34783769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34786074_34787068_34787165_34788085_34788172_34788935_34789024_34789594_34789757_34791071_34791140_34793147_34793269_34793363_34793433_34794066_34794163_34795461_34795611_34796469_34796571_34797016_34797113_34801175_34801258_34801628_34801815_34803952
46996	chr4	-	1758	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	770.766787037428	1	106	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41093993_41094265_41094385_41094700_41094839_41095144_41095272_41098001
46997	chr9	-	1732	5	NNC	ENSMUSG00000086728.3	novel	452	2	NA	NA	2544	10632	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	51	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGCTGGCCTCCCGTGGC	NA	False	NA	NA	False	NA	NA	NA	57035638	57024757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57024838_57025351_57025445_57026374_57026478_57032455_57032741_57034467
46998	chr15	+	2135	13	NIC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	-2	-5	intron_retention	FALSE	canonical	3	114	junction_9	18.7942071453473	472	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTCTGAAAGAAATCGTTTT	3147	False	NA	NA	False	NA	NA	NA	76460602	76480003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479467_76479536_76479654_76479738
46999	chr9	-	1434	8	NNC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	3	1500	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	601.467728620105	1	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACAGTTCCAGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	21061235	21050748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21051133_21052069_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
47000	chr3	+	3349	8	FSM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	-5	130	0	3	multi-exon	FALSE	canonical	3	56	junction_2	49.6608908662808	1	136	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGTGTGTATGTTAAA	8787	False	NA	NA	False	NA	NA	NA	30656787	30672520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
47001	chr5	-	2386	11	FSM	ENSMUSG00000029413.15	ENSMUST00000113102.10	2414	11	28	0	23	0	multi-exon	FALSE	canonical	3	29	junction_5	5.44885309033011	125	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGTCTGAGTGTCCTAC	9226	False	NA	NA	False	NA	NA	NA	92426001	92405517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777_92424943_92425770
47002	chr6	-	3091	4	FSM	ENSMUSG00000068299.12	ENSMUST00000095757.4	3019	4	-79	7	-79	-7	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	49	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGACTCGGGTGGATC	NA	False	NA	NA	False	NA	NA	NA	85881945	85876039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_85878596_85878934_85879080_85879173_85879312_85881693
47003	chr14	-	1193	6	NNC	ENSMUSG00000022051.16	novel	3238	6	NA	NA	424	121	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	293.262067100401	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGAGCCGCTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	67245881	67224600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67245823
47004	chr1	+	1662	14	NNC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88.7478310427522	430	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTTGGACTCCTACTT	NA	False	NA	NA	False	NA	NA	NA	75412617	75419819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75412656_75412790_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
47005	chr4	-	2488	20	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	87	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.83314808308	1	125	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	108975132	108918851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919518_108919654_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923329_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
47006	chr4	+	2107	15	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	5	119	intron_retention	FALSE	canonical	0	0	junction_5	335.659364808541	1	71	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTTTTGTTCTCTATGT	NA	False	NA	NA	False	NA	NA	NA	155954076	155973309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969677_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155972225_155972311_155972413_155972504_155972567_155972640_155972784_155972852_155972983_155973076
47007	chr7	-	2989	15	NIC	ENSMUSG00000025507.14	novel	2894	15	NA	NA	258	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_13	20.5386643843722	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTTTGCAGAGATCATT	NA	False	NA	NA	False	NA	NA	NA	141022975	141018026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021230_141021387_141021443_141021524_141021774_141022063_141022478_141022880
47009	chr3	-	2183	18	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCGGAGGCACTGTGGAGT	NA	False	NA	NA	False	NA	NA	NA	151938330	151916259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916329_151919610_151919733_151923048_151923152_151923609_151923684_151923848_151923907_151925318_151925478_151925564_151925674_151925786_151925875_151926101_151926202_151926318_151926422_151926901_151927044_151927718_151927881_151928464_151928614_151928916_151929000_151931709_151931850_151933806_151933890_151937519_151937658_151938029
47010	chr15	+	1186	9	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	0	-378	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	4407.66902504884	2	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTAAATGTGC	NA	False	NA	NA	False	NA	NA	NA	103148858	103153004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151135_103152413_103152456_103152682
47011	chr9	+	4767	8	FSM	ENSMUSG00000025239.4	ENSMUST00000026269.4	4848	8	75	6	37	-6	multi-exon	FALSE	canonical	3	33	junction_2	3.69776545872708	20	34	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAACCCCCAAGACTGTC	NA	False	NA	NA	False	NA	NA	NA	123307845	123350611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_123309687_123329195_123329298_123339572_123339641_123340280_123340344_123345839_123345971_123346427_123346480_123347160_123347230_123348170
47012	chr7	-	2379	6	Antisense	novelGene_ENSMUSG00000053091.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAACAGAAAAGGTAATTT	NA	False	NA	NA	False	NA	NA	NA	66364491	66357786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_66358304_66358390_66358475_66359039_66359181_66359974_66360492_66361617_66361795_66363548
47013	chr9	+	1343	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6324.99771615571	2	76	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64082992_64084132_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
47014	chr4	-	1872	8	FSM	ENSMUSG00000028923.15	ENSMUST00000030760.15	1906	8	34	0	19	0	multi-exon	TRUE	canonical	3	362	junction_3	45.6883855200484	968	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8519	False	NA	NA	False	NA	NA	NA	140805634	140793822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
47016	chr2	+	532	4	NIC	ENSMUSG00000079484.13	novel	751	9	NA	NA	-2	-2500	intron_retention	FALSE	canonical	2	39	junction_2	22.0050499254653	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGAGCATCACACATTCT	NA	False	NA	NA	False	NA	NA	NA	30156858	30167038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30156954_30159700_30159860_30164481_30164736_30167014
47018	chr11	-	1103	9	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	444.050391284593	99	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190907	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119184430_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
47019	chr15	-	2301	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	3	0	3	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	135	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTCCCTGTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	98816109	98801797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
47020	chr6	+	3014	2	Antisense	novelGene_ENSMUSG00000029817.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1317	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGACCTGGAATTCAGAGA	NA	False	NA	NA	False	NA	NA	NA	49233847	49237076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_49235378_49235592
47021	chr9	-	3108	6	FSM	ENSMUSG00000032508.9	ENSMUST00000035092.7	1960	6	-1173	25	197	-13	multi-exon	FALSE	canonical	3	36	junction_3	6.61513416341649	111	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTATTCTATTTTGAGAAA	NA	False	NA	NA	False	NA	NA	NA	119170280	119165024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_119165966_119166400_119166577_119166819_119166912_119167071_119167253_119167641_119167777_119168697
47022	chr7	+	2325	11	NIC	ENSMUSG00000030822.16	novel	2402	11	NA	NA	29	11	combination_of_known_junctions	FALSE	canonical	2	49	junction_10	56.3490017657811	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGCCTCCAGCAGAGT	NA	False	NA	NA	False	NA	NA	NA	127070690	127075942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075615
47023	chr3	+	1577	1	NIC	ENSMUSG00000027550.15	novel	3359	19	NA	NA	-2026	-3806	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAATAACAAAATAAATCTA	7401	False	NA	NA	False	NA	NA	NA	14611150	14612727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_14611200_14612700
47024	chr11	-	2291	1	Antisense	novelGene_ENSMUSG00000020894.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGGGAAAGCCTCTACCT	NA	False	NA	NA	False	NA	NA	NA	68983201	68980910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_68980900_68983200
47025	chr13	+	1819	11	NNC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	143.209252494383	6	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	99481288	99552070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540066_99541505_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
47026	chr1	-	1266	8	ISM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	9033	1013	-6889	-3	3prime_fragment	FALSE	canonical	3	699	junction_3	110.97839466145	2	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAACAAGACCTTTTTAA	9825	False	NA	NA	False	NA	NA	NA	175444168	175428952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094
47027	chr6	+	1458	6	NNC	ENSMUSG00000029910.15	novel	1725	5	NA	NA	-12	89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	369.381970323404	117	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTGGATGGATTGTGTT	NA	False	NA	NA	False	NA	NA	NA	66512396	66518093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66517181_66517620
47028	chr8	-	1657	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	77	1	49	-1	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	1	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGTCTTGTTGTCTGGA	3411	False	NA	NA	False	NA	NA	NA	105261191	105237660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
47032	chr8	+	1526	8	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	90.2784807228869	364	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGTGTATTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	47070412	47092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953_47091181_47092165
47033	chr18	-	1989	11	NNC	ENSMUSG00000024644.18	novel	2152	11	NA	NA	131	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	183.283278015208	2	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCCGTGGTCTGACT	NA	False	NA	NA	False	NA	NA	NA	84700053	84685593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690252_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
47034	chr4	+	2432	20	Antisense	novelGene_ENSMUSG00000040964.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.223296878269436	21	21	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCTGCAAACAGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	140290076	140401915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_140290128_140291498_140291629_140292444_140292562_140295653_140295834_140297568_140297714_140302594_140302766_140304361_140304460_140305553_140305671_140306579_140306756_140307695_140307776_140308133_140308238_140311129_140311243_140314091_140314212_140319128_140319298_140320402_140320490_140321457_140321548_140337840_140337878_140338539_140338722_140344220_140344306_140401735
47035	chr6	-	1011	6	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2878.01619175431	3	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471707	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437738_125439076_125439167_125439289_125439389_125441411_125441451_125449371_125449475_125471536
47036	chr12	+	4452	6	Antisense	novelGene_ENSMUSG00000020642.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	34	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGCTAATTGCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	26356887	26377544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_26360786_26364015_26364111_26367649_26367798_26370952_26371151_26377267_26377338_26377501
47037	chr11	+	1892	10	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	-21	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	533.996416504368	1	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTACGTTGTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	4823977	4844193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824099_4833367_4833496_4833725_4833772_4834021_4834122_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
47038	chr12	+	2616	14	NNC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	617	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	93.0497099442554	1	144	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGGGCTCCGGGATCTGT	NA	False	NA	NA	False	NA	NA	NA	85158283	85180858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85158306_85162046_85162096_85165132_85165184_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
47039	chr5	-	1570	11	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	22	472	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	715.456609446024	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGCTGGGCTGTCTACCT	NA	False	NA	NA	False	NA	NA	NA	117527065	117517209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520881_117521494_117521620_117522595_117522670_117523452_117523533_117524786_117524867_117525933_117525999_117526981
47040	chr9	-	2381	5	NNC	ENSMUSG00000074829.11	novel	634	5	NA	NA	150	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.8423695919137	1	93	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCAAAAGAAAATGATATAC	NA	False	NA	NA	False	NA	NA	NA	124074379	124054448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_124055184_124055347_124056732_124057727_124057789_124057987_124058115_124074305
47041	chr16	-	2696	4	NNC	ENSMUSG00000022887.10	novel	3786	11	NA	NA	38283	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.44948974278318	45	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACAACCCTGGCTTGAGA	NA	False	NA	NA	False	NA	NA	NA	23301063	23287117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_23289481_23293623_23293699_23295016_23295155_23300943
47042	chrX	-	1016	5	Antisense	novelGene_ENSMUSG00000016319.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAAGAGGCAGGCG	NA	False	NA	NA	False	NA	NA	NA	36062371	36059374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36059492_36060492_36060978_36061385_36061530_36062039_36062205_36062266
47043	chrX	+	1567	12	NNC	ENSMUSG00000039382.13	novel	955	8	NA	NA	210	-9	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	85.699069881256	11	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTTTGAGTGGCATTTAT	4926	False	NA	NA	False	NA	NA	NA	7589375	7594412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7589401_7589803_7589993_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7594049
47044	chr4	-	3350	13	NNC	ENSMUSG00000028602.13	novel	3414	13	NA	NA	9549	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	4.81028989655394	36	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAAAGGGTCTCTGCTCA	NA	False	NA	NA	False	NA	NA	NA	145032168	144993727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_144995806_145000852_145001067_145004095_145004122_145011715_145011770_145011895_145011995_145014548_145014647_145014995_145015087_145019163_145019331_145019668_145019760_145023419_145023564_145025303_145025421_145029647_145029736_145032085
47045	chr8	-	2748	13	NNC	ENSMUSG00000035569.18	novel	8455	13	NA	NA	27	485	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	107.656346254593	7	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTTGTACATGGCACT	NA	False	NA	NA	False	NA	NA	NA	123768732	123610075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_123611076_123612388_123612482_123614052_123614197_123614266_123614366_123622542_123622896_123623298_123623447_123625312_123625456_123626342_123626547_123626717_123626889_123635406_123635546_123642639_123642785_123701467_123701532_123768687
47046	chr17	-	2249	5	NIC	ENSMUSG00000061046.10	novel	1453	8	NA	NA	35	-4	intron_retention	FALSE	canonical	3	40	junction_2	8.26135582092915	16	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGGATCCTTCCAGAG	4429	False	NA	NA	False	NA	NA	NA	26004471	26001779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634
47047	chr17	+	1442	3	NNC	ENSMUSG00000055760.13	novel	1134	3	NA	NA	10	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	192.5	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGGGTTCTTTTGACTAA	NA	False	NA	NA	False	NA	NA	NA	80531879	80535908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_80532257_80532870_80533194_80535166
47048	chrX	-	2171	3	NNC	ENSMUSG00000035427.19	novel	2401	3	NA	NA	-35	-49172	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	13	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGAGATTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	85348734	85343033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_85344996_85347819_85347902_85348607
47049	chr2	+	1557	5	NIC	ENSMUSG00000027203.16	novel	1950	6	NA	NA	-183	-113	combination_of_known_splicesites	FALSE	canonical	3	111	junction_2	998.653687471288	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAACTTCCCCATTTGGAG	NA	False	NA	NA	False	NA	NA	NA	125089636	125100415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_125089817_125091085_125091178_125098768_125098844_125098989_125099061_125099276
47050	chr7	+	2132	7	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	61.1201003489578	2	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAGTCTGAGGTAGGTAT	647	False	NA	NA	False	NA	NA	NA	101872287	101887766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101872505_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
47051	chr11	+	1762	9	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	26	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	552.092256217201	1	67	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4824030	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4838856_4838938_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
47052	chr19	-	4148	14	NIC	ENSMUSG00000035173.15	novel	6445	16	NA	NA	9	-835	intron_retention	FALSE	canonical	3	43	junction_2	9.1554620422511	4	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAGACACACCAGAAGAGG	5206	False	NA	NA	False	NA	NA	NA	56810613	56780229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_56781939_56783521_56783603_56785875_56786066_56786998_56787255_56788495_56788639_56789344_56789432_56789598_56789698_56790316_56790422_56795397_56795518_56796409_56796623_56797624_56797754_56798670_56798798_56801426_56802122_56810419
47053	chr19	+	3110	3	FSM	ENSMUSG00000049562.7	ENSMUST00000235575.2	2785	3	24	-349	-4	349	multi-exon	FALSE	canonical	0	0	junction_1	2	3	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAACAACCCCCAAACTT	7990	False	NA	NA	False	NA	NA	NA	5618076	5621638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5618112_5618467_5618636_5618731
47054	chr2	+	3040	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	30	960	28	-960	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	1	173	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAAGTTCTGTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	29825467	29849423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
47056	chr7	-	897	7	NIC	ENSMUSG00000074129.15	novel	658	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	11064	junction_6	2342.7579663484	59	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778159	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
47057	chr15	+	2395	8	NNC	ENSMUSG00000023034.8	novel	893	2	NA	NA	189	-272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	68.7726215102184	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTCTGTTGTAAATAAGC	706	False	NA	NA	False	NA	NA	NA	101152338	101172404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101152536_101156188_101156308_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
47058	chr3	-	1459	3	ISM	ENSMUSG00000037152.12	ENSMUST00000038108.12	1249	4	53	352	29	-352	intron_retention	FALSE	canonical	3	5471	junction_1	370	112	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATTATAGACCAATCTC	NA	False	NA	NA	False	NA	NA	NA	51316356	51312449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_51313041_51314756_51314834_51315565
47060	chr11	-	1592	11	Intergenic	novelGene_2491	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	202	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGGCGGAGACTGAGAG	NA	False	NA	NA	False	NA	NA	NA	104219261	104122319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_104122431_104173190_104173304_104185681_104185748_104193183_104193235_104196136_104196234_104197449_104197591_104201099_104201358_104208979_104209076_104212176_104212255_104213249_104213365_104218795
47061	chr2	+	1095	5	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	210	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	668.283435377535	147	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCTTTCTTTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	143757449	143785241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046_143784242_143784844
47062	chr9	+	826	6	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1661.3307437112	3	11	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTTATGGTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	119956852	119960621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957649_119958245_119958343_119959183_119959448_119960065_119960232_119960492
47063	chr3	-	1932	5	FSM	ENSMUSG00000038550.11	ENSMUST00000159739.8	1939	5	-6	13	-6	-11	multi-exon	FALSE	canonical	3	167	junction_2	14.8723737177358	24	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTTTTACTTAAATGCT	NA	False	NA	NA	False	NA	NA	NA	95789523	95785827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492
47064	chr15	+	915	8	ISM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	-19	1971	-19	-1971	5prime_fragment	FALSE	canonical	3	2223	junction_7	3918.35715262279	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTTATGGAAACCAGGGC	NA	False	NA	NA	False	NA	NA	NA	103148839	103151411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348
47065	chr9	-	2490	5	FSM	ENSMUSG00000097177.9	ENSMUST00000181448.3	602	5	3	-1891	-1	804	multi-exon	FALSE	canonical	3	17	junction_4	50.4746223363781	109	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTATCACATGTTATT	NA	False	NA	NA	False	NA	NA	NA	88740920	88737393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740861
47066	chr17	-	2302	15	NNC	ENSMUSG00000059208.16	novel	3934	16	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	884.162283677352	1	134	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAAGTGGCTTGCCTTTT	5756	False	NA	NA	False	NA	NA	NA	33904377	33865215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865627_33867786_33867831_33868577_33869372_33871246_33871291_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885595_33885660_33887958_33888053_33889050_33889108_33896247_33896415_33904240
47067	chr1	+	3057	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	7	-466	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	106	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTACTCATTTATTCCAG	NA	False	NA	NA	False	NA	NA	NA	190661025	190678693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
47068	chr10	+	3496	18	FSM	ENSMUSG00000020070.19	ENSMUST00000119567.8	4130	18	11	623	1	-623	multi-exon	FALSE	canonical	3	50	junction_14	9.76718607764962	35	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTCATTATATATATATA	NA	False	NA	NA	False	NA	NA	NA	62816031	62849111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_62816112_62818449_62818624_62824901_62825020_62826758_62826861_62828895_62829020_62829758_62829821_62830483_62830550_62831088_62831159_62833659_62833762_62833857_62833975_62836011_62836180_62837961_62838060_62840435_62840556_62842403_62842534_62843452_62843548_62845134_62845184_62847196_62847275_62847368
47071	chr3	-	789	3	FSM	ENSMUSG00000044080.10	ENSMUST00000060738.9	677	3	-146	34	-146	-31	multi-exon	FALSE	canonical	3	340	junction_1	21.5	1107	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTTTTAATAAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	90421845	90418374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90418672_90419302_90419457_90421507
47072	chr11	-	3335	4	NNC	ENSMUSG00000011254.17	novel	2250	6	NA	NA	9	-1036	intron_retention	FALSE	canonical	2	11	junction_3	53.6677018533701	2	114	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTATTCATACTTTGCTG	6321	False	NA	NA	False	NA	NA	NA	45846301	45838705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_45839156_45841022_45841131_45842369_45843728_45844882
47074	chr4	-	2638	17	Antisense	novelGene_ENSMUSG00000041143.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTTCTGGCAGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	138786079	138700566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_138700596_138704515_138704633_138710930_138711076_138712441_138712559_138717849_138718030_138723706_138723896_138737762_138737913_138746883_138746981_138747355_138747499_138748167_138748290_138748931_138749094_138750238_138750377_138751983_138752053_138757137_138757222_138779808_138779924_138781204_138781328_138785421
47076	chr11	-	1874	15	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-1661	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.833324955597	3	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTAACTGTATTGAGTAA	3977	False	NA	NA	False	NA	NA	NA	11832290	11764107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11764334_11764373_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11779084_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11832251
47077	chr7	+	1213	10	Antisense	novelGene_ENSMUSG00000030603.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCACGGCTTCCGCTGA	9515	False	NA	NA	False	NA	NA	NA	27741131	27749473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_27741340_27741521_27741582_27741763_27741875_27742270_27742402_27746410_27746505_27746597_27746711_27746793_27746937_27748216_27748405_27748528_27748630_27749409
47078	chr4	+	3110	3	NIC	ENSMUSG00000028522.17	novel	821	9	NA	NA	0	2928	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	56.5	15	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTTTGTTGTGGTATT	3682	False	NA	NA	False	NA	NA	NA	102972756	102991146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_102972858_102984469_102984495_102988162
47079	chr9	-	1079	9	ISM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	351	0	310	0	3prime_fragment	FALSE	canonical	3	2349	junction_1	159.342398626354	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	5490	False	NA	NA	False	NA	NA	NA	20809568	20805644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379
47080	chr4	-	2756	13	FSM	ENSMUSG00000028207.19	ENSMUST00000108337.8	2836	13	78	2	2	-2	multi-exon	FALSE	canonical	0	0	junction_10	142.503411265212	61	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGATTGTCATTATT	6	True	NA	NA	False	NA	NA	NA	9669084	9575268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
47081	chr3	-	1591	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	248	0	-1	0	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTCTAATTTTTCATTA	NA	False	NA	NA	False	NA	NA	NA	113423550	113399112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
47082	chr4	-	3462	8	NNC	ENSMUSG00000040761.17	novel	12082	15	NA	NA	-2284	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	37.6704290457355	2	46	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTCAGGTGTGAAGGTGG	9276	False	NA	NA	False	NA	NA	NA	141201088	141195202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141196349_141196693_141196853_141197126_141197322_141197420_141197622_141197771_141197922_141198680_141199559_141200302_141200461_141200513
47083	chr18	-	2384	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	98	16	-20	-16	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACAAGGACATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	24254912	24237829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
47084	chr13	-	1626	7	NIC	ENSMUSG00000021418.16	novel	4380	8	NA	NA	65	1	intron_retention	FALSE	canonical	3	464	junction_4	46.3381292481928	3	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCACACCTTGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	36090246	36080693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36086092_36087670_36087740_36088401_36088547_36090186
47085	chr5	+	1421	7	NNC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2330.28713657542	5	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582975	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583063_104584240_104584309_104584406_104584443_104585517_104585602_104586091_104586134_104587130_104587413_104588094
47086	chr6	-	1806	1	NIC	ENSMUSG00000072772.4	novel	863	3	NA	NA	74	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGTGTCAGTCATT	9326	False	NA	NA	False	NA	NA	NA	124717954	124716148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124716100_124718000
47087	chr10	-	1748	6	Antisense	novelGene_ENSMUSG00000004207.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGCGCGGGCCCCGCCCA	NA	False	NA	NA	False	NA	NA	NA	60132430	60113472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_60113604_60127419_60127554_60128283_60128356_60129124_60129254_60130311_60130889_60131725
47088	chr11	-	3237	18	NIC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	-779	2	intron_retention	TRUE	canonical	3	32	junction_12	6.72340332340214	9	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTTAGTTCATTTACT	NA	False	NA	NA	False	NA	NA	NA	69782096	69772390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781319_69781414_69781469_69781689
47089	chr6	-	1394	8	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3396.19904587226	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446809	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51443520_51443686_51443885_51444033_51444164_51444272_51446650
47090	chr4	-	2186	8	ISM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	2659	5	2659	-2	3prime_fragment	FALSE	canonical	3	462	junction_7	44.1195037624507	4	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTCTGGCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	108433874	108422071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565
47091	chr8	+	1792	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	12	-73	3	69	multi-exon	FALSE	canonical	3	147	junction_2	26.3256528883901	487	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGATACAAGCTAACTCCAA	NA	False	NA	NA	False	NA	NA	NA	88845408	88861807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
47092	chr7	-	2735	19	NNC	ENSMUSG00000001248.16	novel	3810	19	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	110.689993636995	1	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	896	False	NA	NA	False	NA	NA	NA	30855297	30829551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833932_30835113_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30854291_30854572_30855260
47093	chr12	+	3099	2	Antisense	novelGene_ENSMUSG00000021242.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGCAGCCCGAGCAGTC	2086	False	NA	NA	False	NA	NA	NA	84809172	84819672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_84812158_84819558
47094	chr12	-	1762	14	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-15	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	274.030728635835	1	70	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAAAAAGTCTCAATTCT	NA	False	NA	NA	False	NA	NA	NA	87519059	87496693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497158_87497717_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
47096	chr11	+	1870	2	ISM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	18	0	2	0	intron_retention	FALSE	canonical	3	484	junction_1	0	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	59093332	59096714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_59093486_59094997
47097	chr8	+	3079	15	NIC	ENSMUSG00000031842.16	novel	3380	18	NA	NA	6011	-8	combination_of_known_junctions	TRUE	canonical	1	2	junction_14	1.66598625567009	17	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATCTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71182724	71203813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71182934_71197922_71198115_71198515_71198553_71198636_71198708_71198832_71198886_71199180_71199294_71199435_71199530_71199868_71200030_71200115_71200215_71200463_71200629_71200705_71200806_71201016_71201172_71201559_71201683_71201871_71202055_71202489
47098	chr16	-	2016	1	Intergenic	novelGene_3852	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTAAGATATTATAAGT	8891	False	NA	NA	False	NA	NA	NA	84576171	84574155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_84574200_84576200
47099	chr8	-	2838	4	ISM	ENSMUSG00000040263.17	ENSMUST00000174709.8	2834	11	27494	9	-447	2	3prime_fragment	FALSE	canonical	3	140	junction_3	29.698484809835	8	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCTCTAAGGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	122528785	122523080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122523483_122523656_122524976_122526186_122526396_122527877
47100	chr4	-	2289	15	NNC	ENSMUSG00000084968.2	novel	3700	4	NA	NA	5361	3671	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	102	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGCAATGGCCTGCCAACC	NA	False	NA	NA	False	NA	NA	NA	108471685	108445950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108445958_108450525_108450661_108452519_108452846_108454329_108454674_108456517_108456620_108457123_108457280_108459150_108459246_108460575_108460680_108461157_108461332_108461694_108461803_108462722_108462872_108463431_108463553_108469245_108469418_108470265_108470352_108471475
47101	chr9	-	783	7	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	368.932581917076	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	7514	False	NA	NA	False	NA	NA	NA	57064378	57062322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57062565_57062695_57062873_57063185_57063296_57063455_57063576_57063799_57063840_57064058_57064125_57064350
47102	chr2	-	1263	1	Antisense	novelGene_ENSMUSG00000082809.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCAACGGGTTAGAAGGC	NA	False	NA	NA	False	NA	NA	NA	151302137	151300874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_151300900_151302100
47105	chr15	-	3768	4	ISM	ENSMUSG00000022552.17	ENSMUST00000144816.9	1669	6	15	4	-13	-4	intron_retention	FALSE	canonical	3	127	junction_1	17.5689119374726	14	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTGTTCTGTTC	8164	False	NA	NA	False	NA	NA	NA	76235260	76231244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285
47107	chr5	+	1000	2	Genic_Genomic	ENSMUSG00000067161.7	novel	892	1	NA	NA	-77	271	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	32	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAAAAAAAAAAGCATCC	NA	False	NA	NA	False	NA	NA	NA	97412609	97413849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_97412828_97413067
47108	chrX	-	3897	5	NNC	ENSMUSG00000047996.17	novel	3964	5	NA	NA	10	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4.86698058348295	29	47	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTTAAACCCAACAGCT	NA	False	NA	NA	False	NA	NA	NA	77627448	77493233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_77496779_77527356_77527518_77550519_77550586_77564376_77564428_77627374
47109	chr5	-	1408	8	Antisense	novelGene_ENSMUSG00000067367.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	123	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGCGTGCGCGCAGAGGCC	NA	False	NA	NA	False	NA	NA	NA	38391643	38377848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_38377978_38381968_38382141_38385197_38385305_38385391_38385478_38387904_38388333_38388614_38388710_38390589_38390669_38391331
47110	chr17	-	1587	5	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	2	-3	intron_retention	FALSE	canonical	3	4	junction_4	95.0667528634485	245	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGAATTGGAACATTG	NA	False	NA	NA	False	NA	NA	NA	79202527	79192328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79200136_79200599_79201971
47113	chr4	+	1406	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	47	4	47	1	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	2326	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGAAGCCTAGGTGGTC	NA	False	NA	NA	False	NA	NA	NA	152262637	152356305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
47114	chr19	+	2056	8	ISM	ENSMUSG00000043639.16	ENSMUST00000164202.9	4892	14	135950	21795	19948	-21795	internal_fragment	FALSE	canonical	2	3	junction_5	1.51185789203691	7	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCCAAGTTGGACAAAT	829	False	NA	NA	False	NA	NA	NA	53801686	53832016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_53802772_53803946_53804009_53805576_53805669_53806353_53806452_53821076_53821221_53823078_53823211_53829409_53829490_53831653
47115	chr19	+	2455	6	ISM	ENSMUSG00000043639.16	ENSMUST00000164202.9	4892	14	166231	135	327	-135	3prime_fragment	FALSE	canonical	3	12	junction_2	2.13541565040626	8	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGATTTGTTCTATCCAGG	NA	False	NA	NA	False	NA	NA	NA	53831967	53853676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_53832276_53838532_53838620_53839607_53840248_53841934_53842067_53847822_53847945_53852510
47116	chr9	+	1961	15	NNC	ENSMUSG00000033590.9	novel	6727	41	NA	NA	-12321	4895	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	12.7233114031381	9	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCAGTACATTGCTTGC	5109	False	NA	NA	False	NA	NA	NA	75182791	75199775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_75182919_75183183_75183331_75184213_75184379_75185506_75185601_75186617_75186682_75189117_75189299_75191174_75191269_75191428_75191493_75192214_75192296_75193692_75193874_75195330_75195425_75196174_75196239_75196332_75196510_75198130_75198219_75199435
47117	chr15	-	1358	11	NIC	ENSMUSG00000022570.8	novel	1355	11	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	144.428667514452	1111	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8864	False	NA	NA	False	NA	NA	NA	75801657	75796531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
47118	chr5	-	2127	6	NNC	ENSMUSG00000025856.16	novel	2060	6	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	157.310393807911	528	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCACACTGGATGCATCC	NA	False	NA	NA	False	NA	NA	NA	138980697	138961773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980296
47119	chr7	-	2361	9	FSM	ENSMUSG00000058447.9	ENSMUST00000182746.2	2374	9	10	3	10	-3	multi-exon	FALSE	canonical	3	5	junction_6	43.1955943934101	86	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	9900	False	NA	NA	False	NA	NA	NA	29789825	29755461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29780515_29780643_29786524_29786585_29789712
47120	chr6	+	2194	13	NIC	ENSMUSG00000001630.14	novel	4550	14	NA	NA	-26	-2	combination_of_known_splicesites	FALSE	canonical	2	11	junction_10	42.7787427741084	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCTGATCAGTCAATGG	NA	False	NA	NA	False	NA	NA	NA	146626466	146678052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146674815_146674912_146676897_146676990_146677091
47121	chr9	-	1954	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	-17	4	-17	0	multi-exon	FALSE	canonical	3	898	junction_5	106.241470245851	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	6314	False	NA	NA	False	NA	NA	NA	57065578	57062322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350
47122	chr7	-	3037	21	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	16	0	intron_retention	FALSE	non_canonical	0	0	junction_13	59.6218080906643	1	126	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGATGTAGATCCAG	NA	False	NA	NA	False	NA	NA	NA	140697703	140681130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687657_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140690288_140690426_140690552_140690670_140691067_140691143_140697626
47123	chr1	+	1843	18	NNC	ENSMUSG00000062590.14	novel	764	9	NA	NA	9583	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	23.7233186496086	9	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATTCTCTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	86092123	86180211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86092224_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998
47126	chr4	-	2390	20	NNC	ENSMUSG00000040964.17	novel	4493	28	NA	NA	8727	12660	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_19	57.0764661808153	54	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGCAAGATTTCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	140367334	140290076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_140290126_140291497_140291626_140292442_140292559_140295649_140295832_140297567_140297714_140302594_140302769_140304364_140304458_140305551_140305669_140306578_140306759_140307699_140307778_140308135_140308243_140311134_140311244_140314094_140314212_140319128_140319299_140320403_140320488_140321456_140321549_140337841_140337876_140338537_140338724_140344223_140344304_140367186
47128	chr2	+	3538	8	Antisense	novelGene_ENSMUSG00000106856.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	143	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTAGTGACTGATGGGG	5423	False	NA	NA	False	NA	NA	NA	35290202	35354386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_35292811_35297952_35298094_35303336_35303442_35304231_35304313_35312189_35312283_35313245_35313424_35322524_35322647_35354176
47129	chr4	+	1518	8	NNC	ENSMUSG00000028745.19	novel	1674	9	NA	NA	6	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	574.466389489465	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	138920255	139019079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007902_139015066_139015144_139018313
47130	chr17	-	979	1	Antisense	novelGene_ENSMUSG00000024069.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGGGGCCCACGCCTTT	NA	False	NA	NA	False	NA	NA	NA	74717700	74716721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_74716700_74717700
47131	chr4	+	1881	16	FSM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	2	8	2	-3	multi-exon	FALSE	canonical	3	19	junction_11	4.66476151587624	94	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAACTGGAGTCACTT	NA	False	NA	NA	False	NA	NA	NA	95445745	95815168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
47132	chr4	-	3277	4	NNC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-133	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	120.324561083762	1	153	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAACCTTAATAAATCATT	-3	True	NA	NA	False	NA	NA	NA	58553761	58435290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58437635_58486483_58487225_58504621_58504782_58553729
47133	chr19	+	2382	7	FSM	ENSMUSG00000025076.13	ENSMUST00000026062.10	2350	7	-39	7	-39	-7	multi-exon	FALSE	canonical	3	21	junction_1	6.36177822799744	145	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAAACTCCTGACTGGTC	NA	False	NA	NA	False	NA	NA	NA	56385521	56430769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_56385750_56392847_56392958_56421673_56421811_56422233_56422363_56424658_56424835_56425150_56425281_56429297
47135	chr2	-	2721	4	NIC	ENSMUSG00000063364.11	novel	745	5	NA	NA	0	2067	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	3.29983164553722	14	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCTTATAAAAGAGGTTAA	NA	False	NA	NA	False	NA	NA	NA	150204653	150182688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_150185076_150186228_150186290_150186499_150186627_150204507
47136	chr9	-	1380	1	FSM	ENSMUSG00000038717.10	ENSMUST00000216815.3	6310	1	2674	2256	-1107	-1519	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCGTGACTTACTCGAA	NA	False	NA	NA	False	NA	NA	NA	44827490	44826110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44826100_44827500
47137	chr6	-	1437	2	NNC	ENSMUSG00000030117.6	novel	2125	2	NA	NA	1319	-844	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	23	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCTTATGCTCTCTT	8781	False	NA	NA	False	NA	NA	NA	122585464	122583205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122584095_122584916
47138	chr6	+	2079	12	FSM	ENSMUSG00000034930.17	ENSMUST00000065512.11	2191	12	109	3	109	-3	multi-exon	FALSE	canonical	3	13	junction_1	17.934223251548	147	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGCCTTCTTTCACTTGT	3638	False	NA	NA	False	NA	NA	NA	83112901	83129557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83113041_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
47139	chr5	+	2331	17	Antisense	novelGene_ENSMUSG00000029472.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	93	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACGAGCCGCCTTTACG	NA	False	NA	NA	False	NA	NA	NA	122925792	122959282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_122926082_122926364_122926522_122929664_122929818_122929888_122929997_122931498_122931622_122932474_122932554_122937400_122937542_122938516_122938657_122940192_122940284_122940887_122940968_122944307_122944499_122945362_122945461_122952610_122952679_122955883_122956066_122956914_122957021_122957663_122957755_122959048
47140	chr15	+	1474	13	NNC	ENSMUSG00000056851.15	novel	1499	14	NA	NA	7	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	188.14599827439	2	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTAAAAGATGGACTGG	2242	False	NA	NA	False	NA	NA	NA	102379206	102407303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381719_102381862_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
47141	chr2	-	1380	5	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	4	33	intron_retention	FALSE	canonical	0	0	junction_1	145.566136171845	9	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGACCAGACAGAAAGGC	NA	False	NA	NA	False	NA	NA	NA	26806353	26804209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26804597_26804804_26805527_26805607_26805742_26805966_26806019_26806268
47143	chr10	-	1828	6	NNC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	352	-2	intron_retention	FALSE	canonical	0	0	junction_5	167.214114236807	3	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCTCCAGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	81325750	81322292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324539_81325635
47144	chrX	-	1123	5	NIC	ENSMUSG00000025283.16	novel	1162	6	NA	NA	-12	-10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	545.866512986463	189	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATTCAGCCTGAGCAT	NA	False	NA	NA	False	NA	NA	NA	153999457	153996137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_153996664_153997028_153997131_153998596_153998681_153998780_153998833_153999098
47145	chr10	-	1520	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_2	1564.45921647066	164	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	NA	False	NA	NA	NA	95337800	95316666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95316840_95326107_95326810_95329169_95329578_95332685_95332750_95336244_95336385_95337767
47146	chr17	-	3189	18	NNC	ENSMUSG00000024135.11	novel	809	7	NA	NA	21	-8952	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	30.6186500372535	4	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCTCCTCTTTCAAATAG	NA	False	NA	NA	False	NA	NA	NA	86452582	86301326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_86302373_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427425_86435216_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
47147	chr10	+	2747	12	Antisense	novelGene_ENSMUSG00000110869.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	14	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCAGGAGGGCGGGCAG	NA	False	NA	NA	False	NA	NA	NA	93806707	93871607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_93807572_93809697_93809904_93810305_93810407_93816174_93816370_93820023_93820354_93825999_93826150_93829378_93829529_93832699_93832975_93836211_93836385_93839853_93839945_93842821_93842957_93871530
47148	chr16	-	1980	2	Antisense	novelGene_ENSMUSG00000052917.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	133	junction_1	0	345	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCTTGTCAGAAGCATCA	4072	False	NA	NA	False	NA	NA	NA	55936661	55932352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_55934262_55936590
47151	chr17	-	1592	5	NIC	ENSMUSG00000052146.17	novel	887	6	NA	NA	0	-11	intron_retention	FALSE	canonical	3	4719	junction_4	910.423356192052	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAGAAAAACATGTCCAC	NA	False	NA	NA	False	NA	NA	NA	27854218	27849408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27849481_27850173_27851331_27853045_27853218_27853299_27853450_27854177
47152	chr2	+	872	6	ISM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	19824	707	8969	-707	3prime_fragment	FALSE	canonical	3	4005	junction_4	168.839094998759	2	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTCGTTTTTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	121264079	121268461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
47154	chr13	-	2867	16	NNC	ENSMUSG00000034617.8	novel	3861	15	NA	NA	52	-322	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	177.409457345305	1	147	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACAGCTTAGGGGCATTT	NA	False	NA	NA	False	NA	NA	NA	68730161	68709803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68710545_68712442_68712610_68712718_68712777_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718209_68719188_68719343_68720696_68720817_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68729921_68730020_68730058
47155	chr11	-	3528	6	FSM	ENSMUSG00000049680.18	ENSMUST00000093362.12	5089	6	-5	1566	-5	4	multi-exon	FALSE	canonical	3	47	junction_5	4.96386945839634	47	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTTGAATGTATACTCAA	8842	False	NA	NA	False	NA	NA	NA	5691155	5664982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5691096
47156	chr5	-	2589	19	NNC	ENSMUSG00000037364.13	novel	3024	20	NA	NA	-81	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	286.931816437199	1	115	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTTTGGTAGTGTGTGT	8377	False	NA	NA	False	NA	NA	NA	137305816	137293993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297170_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300872_137305425_137305448_137305685
47157	chr13	+	2044	2	Intergenic	novelGene_1561	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	43	junction_1	0	172	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGATCTTTTGTAACTTAG	1581	False	NA	NA	False	NA	NA	NA	113872260	113876375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113873083_113875153
47158	chr15	-	1376	7	Antisense	novelGene_ENSMUSG00000033047.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCCTGCTTCGGATCTCC	NA	False	NA	NA	False	NA	NA	NA	78978594	78961049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_78961280_78963172_78963218_78969754_78969912_78970633_78970804_78973662_78974160_78977534_78977616_78978398
47159	chr1	-	2407	7	NNC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	10	356	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_3	194.483075527581	786	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATTGTGGACACTGTTT	NA	False	NA	NA	False	NA	NA	NA	16689498	16639649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16641507_16652150_16652227_16655499_16655656_16659448_16659534_16668174_16668278_16672485_16672578_16689460
47162	chr4	+	1729	10	Antisense	novelGene_ENSMUSG00000028677.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	261	4	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCAGGCCCGCCCCGCCCC	1851	False	NA	NA	False	NA	NA	NA	117128660	117146356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_117129576_117130252_117130324_117130442_117130555_117134568_117134649_117134779_117134835_117134939_117135023_117135198_117135303_117142577_117142711_117143127_117143170_117146222
47163	chr5	+	812	1	ISM	ENSMUSG00000029304.15	ENSMUST00000086833.13	1411	8	5115	4	4041	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGGAGTCTGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	104588098	104588910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_104588100_104588900
47164	chr9	+	941	7	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-7	-148	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7205.73498448747	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTGTGTGACTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	64080667	64085800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082211_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
47165	chr18	-	1622	5	NNC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	97	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	169.614820991563	1260	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACTTTTTTTTGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	53551090	53539407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_53540138_53542196_53542382_53544058_53544153_53544257_53544692_53550911
47166	chr7	+	2919	2	FSM	ENSMUSG00000050428.8	ENSMUST00000053109.5	4873	2	16	1938	16	422	multi-exon	FALSE	canonical	3	58	junction_1	0	62	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAATATTTATAACGCT	9353	False	NA	NA	False	NA	NA	NA	18853799	18872159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18853862_18869302
47168	chr19	+	1746	2	NNC	ENSMUSG00000116347.2	novel	802	2	NA	NA	271	-2440	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCCTTTTTTGTTTTT	NA	False	NA	85	True	NA	NA	NA	8868163	8869988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8869091_8869169
47169	chr14	-	1219	8	NNC	ENSMUSG00000060373.16	novel	2617	9	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1303.17868839141	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8821	False	NA	NA	False	NA	NA	NA	52341389	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52314998_52319284_52319361_52321571_52321849_52335471_52335498_52341345
47170	chr11	-	1126	4	FSM	ENSMUSG00000020457.14	ENSMUST00000125424.2	2093	4	17	950	-5	647	multi-exon	FALSE	canonical	3	1874	junction_1	82.9578206078246	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGCCTCTCCATCCTTGG	NA	False	NA	NA	False	NA	NA	NA	3216398	3208679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3209376_3212488_3212665_3214766_3214891_3216268
47171	chr13	-	1683	1	Genic_Genomic	ENSMUSG00000113623.2	novel	NA	NA	NA	NA	4122	419	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACGTATAAAACTTTGG	7061	False	NA	NA	False	NA	NA	NA	62551570	62549887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_62549900_62551600
47172	chr16	+	3716	7	NNC	ENSMUSG00000022865.15	novel	5742	7	NA	NA	-2	-1761	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	27.8088714861523	2	197	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGACAAGTACTAGCAATT	NA	False	NA	NA	False	NA	NA	NA	78098641	78135887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_78098763_78122044_78122212_78125841_78126047_78130249_78130406_78131056_78131173_78131709_78131849_78133075
47176	chr2	-	1286	11	Antisense	novelGene_ENSMUSG00000076441.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGGAGAGCAGCTATGA	NA	False	NA	NA	False	NA	NA	NA	31410676	31370985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_31371141_31376482_31376556_31378587_31378663_31382323_31382413_31388156_31388262_31390856_31390930_31391498_31391560_31400117_31400253_31404686_31404846_31408735_31408802_31410381
47178	chr14	+	2057	1	ISM	ENSMUSG00000021868.8	ENSMUST00000125881.2	3637	4	2109	2145	2069	-2145	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCACGATAAAGACAGAC	2485	False	NA	NA	False	NA	NA	NA	25696686	25698743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_25696700_25698700
47179	chr14	+	1997	1	NIC	ENSMUSG00000021868.8	novel	3637	4	NA	NA	4274	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGGCTGTCTCTGGTTT	4690	False	NA	NA	False	NA	NA	NA	25698891	25700888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_25698900_25700900
47181	chr8	-	1387	5	NIC	ENSMUSG00000003809.15	novel	2114	12	NA	NA	-1	-763	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	107.487208541296	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCCAGCACTTGGGAGG	NA	False	NA	NA	False	NA	NA	NA	85620547	85618328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85619202_85619459_85619523_85619649_85619794_85620183_85620314_85620370
47182	chr11	-	3104	5	NNC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	-35	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	309.618313411852	1	150	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	40644800	40639378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643179_40644630
47183	chr1	-	1417	15	ISM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	52	29734	-3	8194	5prime_fragment	FALSE	canonical	3	979	junction_7	162.664939839725	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACTGTTTGAAATCTCT	NA	False	NA	NA	False	NA	NA	NA	78465482	78431438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
47184	chr2	+	2782	8	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	0	1	intron_retention	FALSE	canonical	3	103	junction_2	39.1897529297376	1	75	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATGGATGTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	179713585	179727689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179725254_179725856_179726076_179726243_179726383_179727172
47185	chr7	+	1156	5	ISM	ENSMUSG00000030826.20	ENSMUST00000211173.2	1684	12	14467	7	1915	-3	3prime_fragment	FALSE	canonical	3	353	junction_3	62.4154428006403	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGACATTGGCTATCAT	NA	False	NA	NA	False	NA	NA	NA	45236759	45239127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
47186	chr1	-	1941	1	Intergenic	novelGene_439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	165	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGGCCAGGCCATGAA	NA	False	NA	NA	False	NA	NA	NA	128087170	128085229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_128085200_128087200
47187	chrX	+	2476	1	FSM	ENSMUSG00000071723.8	ENSMUST00000096368.4	2491	1	8	7	1	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	70	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTGAAATGTGTTTGAA	4264	False	NA	NA	False	NA	NA	NA	93679682	93682158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_93679700_93682200
47188	chr4	-	1384	11	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	602.203528717659	15	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8830	False	NA	NA	False	NA	NA	NA	129436484	129409896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410207_129411881_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
47192	chr1	+	1551	5	NNC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	79.8040569144201	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCACCTTTGCTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	171097903	171104461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100312_171103678
47193	chr5	+	2211	2	ISM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	9217	714	-14	-551	3prime_fragment	FALSE	canonical	3	1076	junction_1	0	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTATGTAATTATTTGAT	NA	False	NA	NA	False	NA	NA	NA	119818299	119822075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_119819131_119820695
47195	chr9	-	915	4	NIC	ENSMUSG00000035047.10	novel	2490	18	NA	NA	2612	187	intron_retention	FALSE	canonical	3	107	junction_1	7.34846922834953	1	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCACCCGTAGTGAGATC	NA	False	NA	NA	False	NA	NA	NA	21196637	21192143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_21192466_21192957_21193036_21193110_21193525_21196536
47196	chr2	+	2531	2	FSM	ENSMUSG00000078887.11	ENSMUST00000149549.2	570	2	-12	-1949	-12	1949	multi-exon	FALSE	canonical	3	82	junction_1	0	59	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAAGAATTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	175661066	175667264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_175661175_175664841
47198	chr13	-	2575	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	40	93	-26	-93	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	580	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAGAAATGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47196646	47177111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
47199	chr6	+	1935	11	NNC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-16	41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	188.369424270501	1	67	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATTAGTGTTGTTAAGT	NA	False	NA	NA	False	NA	NA	NA	72575594	72584466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581855_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583862_72584017_72584224
47201	chr3	-	2466	20	NNC	ENSMUSG00000028041.18	novel	3053	12	NA	NA	17	-1046	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	29.5881236936699	12	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGGGTGTGTATGGAGTC	NA	False	NA	NA	False	NA	NA	NA	89257249	89248426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89248558_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
47202	chr9	-	1412	9	NNC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	747.515792057265	14	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTTATTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	37568533	37560482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562654_37563910_37564058_37564328_37564423_37565511_37565733_37566317_37566389_37568293
47203	chr4	-	2536	9	Antisense	novelGene_ENSMUSG00000103000.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGAGGCCGGGAGGCGGG	NA	False	NA	NA	False	NA	NA	NA	22434091	22357552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_22357681_22375659_22375770_22376494_22377076_22385904_22386251_22390674_22390920_22403529_22403744_22422714_22422788_22427148_22427461_22433564
47204	chr16	+	1309	10	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	-8	5	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	49.6680337868021	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCCTTGAGATGCTGT	NA	False	NA	NA	False	NA	NA	NA	8288643	8308065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
47205	chrY	-	2198	8	Antisense	novelGene_ENSMUSG00000096768.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	32	71	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTCCGTGTCTCTCTAC	NA	False	NA	NA	False	NA	NA	NA	90833666	90749341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrY_-_90749596_90824824_90824862_90826248_90826456_90831173_90831756_90831852_90832050_90832191_90832270_90832321_90832870_90833371
47206	chr7	-	3716	16	NNC	ENSMUSG00000025474.10	novel	3060	18	NA	NA	3	2	intron_retention	FALSE	canonical	0	0	junction_5	124.217264858348	1	196	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGAGTTTCTGTCTTGGC	NA	False	NA	NA	False	NA	NA	NA	139616300	139575878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580925_139581057_139581338_139581512_139584711_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
47207	chr8	+	2834	15	NNC	ENSMUSG00000031889.10	novel	2916	16	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	71.1950826667008	1	125	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAATGTGAGCTGTTGA	NA	False	NA	NA	False	NA	NA	NA	105951840	105979678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105976017_105976095_105976228_105976288_105977350_105977424_105978229
47208	chr7	+	705	7	ISM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	4655	0	-279	0	3prime_fragment	FALSE	canonical	3	645	junction_2	40.7785346584314	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28529296	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
47209	chr11	-	495	1	NIC	ENSMUSG00000020361.14	novel	4618	19	NA	NA	-4236	-6736	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTCAGGATTTGCCCTA	NA	False	NA	NA	False	NA	NA	NA	53162304	53161809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_53161800_53162300
47210	chr11	-	2649	8	NNC	ENSMUSG00000020361.14	novel	4618	19	NA	NA	-3793	1297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	734.193573985521	21	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATAAAGCTTTAAGTTG	NA	False	NA	NA	False	NA	NA	NA	53161861	53152409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_53152643_53153090_53153253_53153706_53154533_53155968_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772
47211	chr15	-	1871	15	NNC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	228.257205890233	44	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTTCTTTTATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	99149833	99140700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146364_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
47212	chr18	+	4184	19	Antisense	novelGene_ENSMUSG00000048799.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	204	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGTCTGCAGGAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	53814850	53877414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_53816509_53818951_53819102_53836138_53836319_53839893_53840044_53842125_53842175_53846468_53846546_53847837_53847992_53848076_53848160_53851537_53851710_53852307_53852447_53854706_53854849_53856163_53856382_53857434_53857654_53860618_53860817_53864162_53864313_53868719_53868827_53871541_53871660_53873117_53873284_53877360
47213	chr15	+	2702	17	FSM	ENSMUSG00000006369.15	ENSMUST00000057410.14	3659	17	105	852	49	-852	multi-exon	TRUE	canonical	3	136	junction_16	137.738202761616	109	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAAAGTGGATTGCAAT	NA	False	NA	NA	False	NA	NA	NA	85090254	85169884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85147459_85147603_85149450_85149583_85169240
47214	chr2	-	2631	11	FSM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	5	1152	0	-1152	multi-exon	FALSE	canonical	3	23	junction_8	5.37028863283902	143	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGATATTACTCTTTTT	9034	False	NA	NA	False	NA	NA	NA	13549474	13514976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
47215	chrX	-	1836	16	Antisense	novelGene_ENSMUSG00000031065.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	10	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCCCAACAGCCGCGCGC	NA	False	NA	NA	False	NA	NA	NA	20565051	20554687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20554846_20559552_20559766_20560271_20560406_20560502_20560634_20560725_20560783_20560865_20560984_20561746_20561843_20561936_20562001_20562256_20562380_20562584_20562706_20562785_20562882_20562966_20563075_20563159_20563198_20563353_20563450_20564689_20564763_20564841
47217	chr11	+	2375	8	NNC	ENSMUSG00000037992.17	novel	2380	9	NA	NA	4440	-196	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	85.0267664938998	6	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGCCCCCTCCTTGCCC	NA	False	NA	NA	False	NA	NA	NA	98855677	98865572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98855733_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
47218	chr2	-	3458	3	NNC	ENSMUSG00000048486.7	novel	3967	2	NA	NA	41	-6	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	26.5	35	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTACATTCCGGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	163314508	163308304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163310338_163310799_163312039_163314322
47219	chr8	+	1484	8	Antisense	novelGene_ENSMUSG00000039067.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCGACACAGGCCGCTCC	NA	False	NA	NA	False	NA	NA	NA	108307011	108315040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_108307744_108307794_108307952_108309013_108309108_108310806_108310883_108311491_108311594_108312330_108312427_108313253_108313353_108314912
47220	chrX	+	1648	1	FSM	ENSMUSG00000083307.2	ENSMUST00000121924.2	1257	1	22	-413	22	413	mono-exon	FALSE	NA	NA	NA	NA	NA	308	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTCTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	12803132	12804780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12803100_12804800
47221	chr10	-	1863	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-14	-52	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	620.191604801828	1	89	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACAAGTTCATTTCTCA	NA	False	NA	NA	False	NA	NA	NA	116899682	116886962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893179_116893693_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
47223	chr10	-	1756	10	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	30	-195	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	969.14842344538	1	84	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGCTAACCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	127358203	127353202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354988_127355130_127355253_127355416_127355829_127355925_127356786_127356985_127358156
47224	chr13	-	1275	1	FSM	ENSMUSG00000061724.6	ENSMUST00000074863.6	733	1	124	-666	124	666	mono-exon	FALSE	NA	NA	NA	NA	NA	3	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTCACTTACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13407354	13406079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_13406100_13407400
47225	chr15	+	1392	15	NNC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	4	-23	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	162.887544154906	1	17	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCAAAAAAAAAAATTAAAA	2231	False	NA	NA	False	NA	NA	NA	102379195	102407293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923_102407025_102407077
47226	chr14	+	1528	1	Genic_Genomic	ENSMUSG00000021774.14	novel	NA	NA	NA	NA	43362	320	mono-exon	FALSE	NA	NA	NA	NA	NA	19	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGTGCACGCCTTTA	NA	False	NA	NA	False	NA	NA	NA	4185766	4187294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_4185800_4187300
47227	chr19	+	1194	6	Antisense	novelGene_ENSMUSG00000024997.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCACGATAGGCGGAGA	NA	False	NA	NA	False	NA	NA	NA	60852513	60862919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_60853158_60853603_60853690_60858441_60858578_60859857_60859998_60861563_60861700_60862867
47228	chr19	-	1516	5	FSM	ENSMUSG00000024666.7	ENSMUST00000236099.2	1529	5	13	0	7	0	multi-exon	FALSE	canonical	3	12	junction_4	65.3543227338483	199	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1798	False	NA	NA	False	NA	NA	NA	10554438	10547841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554233
47230	chr6	+	4206	10	ISM	ENSMUSG00000003154.16	ENSMUST00000177927.4	4620	12	7651	-10	1487	10	3prime_fragment	TRUE	canonical	3	27	junction_5	3.32591767713239	48	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAGAAAAGAATGTTT	NA	False	NA	NA	False	NA	NA	NA	122805120	122822310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122805463_122808394_122808470_122809896_122809966_122810119_122810261_122810639_122810836_122814779_122815164_122815542_122815645_122816419_122816630_122817184_122817284_122819722
47231	chr1	-	2162	3	Antisense	novelGene_ENSMUSG00000065228.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	91	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAATGTTAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	160866104	160863319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160863362_160863537_160865116_160865562
47232	chr7	-	3135	2	Antisense	novelGene_ENSMUSG00000070425.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTCACCCGAGTTCGTA	NA	False	NA	NA	False	NA	NA	NA	101718940	101715020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_101717286_101718070
47233	chr3	+	2981	5	FSM	ENSMUSG00000027963.15	ENSMUST00000029575.12	3000	5	23	-4	0	4	multi-exon	FALSE	canonical	3	53	junction_4	7.08872343937891	124	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCTGGTGACGTGTTCC	17	False	NA	NA	False	NA	NA	NA	115801133	115822670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_115801532_115804270_115804346_115817655_115818084_115818973_115819045_115820661
47235	chr15	-	1518	3	NNC	ENSMUSG00000116295.2	novel	510	4	NA	NA	1261	634	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	359	11	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAGTACATAGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	97063842	97058179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97059277_97059835_97059964_97063549
47237	chrX	+	963	6	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	37	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1096.67216614629	19	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCACTTTTTGAATTC	NA	False	NA	NA	False	NA	NA	NA	52077050	52110533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
47239	chr9	+	2506	7	FSM	ENSMUSG00000032392.12	ENSMUST00000069000.9	2482	7	-22	-2	-22	2	multi-exon	FALSE	canonical	3	27	junction_1	17.0269394392142	73	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTGTCTGTGACTGTC	NA	False	NA	NA	False	NA	NA	NA	65121949	65146502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65122146_65122630_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
47240	chr9	+	1585	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	-3	-198	-3	198	mono-exon	FALSE	NA	NA	NA	NA	NA	2501	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTTTTTTTGA	5250	False	NA	NA	False	NA	NA	NA	44245987	44247572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44246000_44247600
47241	chr11	-	1873	5	NIC	ENSMUSG00000020553.9	novel	2723	6	NA	NA	26	-756	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	18.1435250158287	114	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTGTCTCCCTCTTA	NA	False	NA	NA	False	NA	NA	NA	89893694	89874246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_89875583_89878021_89878194_89879520_89879601_89881896_89882015_89893527
47244	chrX	-	2248	6	NIC	ENSMUSG00000001134.10	novel	636	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	501	junction_1	59.7882931684791	29	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	20828230	20818161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20828026_20828172
47245	chr6	+	1597	11	NIC	ENSMUSG00000068328.11	novel	1491	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	25	junction_9	328.647592414732	1	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGTCTCTGTTGCCTC	5423	False	NA	NA	False	NA	NA	NA	83031711	83034658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033626_83033739_83033860_83033958_83034075_83034194_83034376_83034478
47246	chrX	+	1589	3	NNC	ENSMUSG00000025056.5	novel	1808	2	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	419.5	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	85235388	85239553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_85235555_85235754_85236581_85238956
47247	chr10	+	3558	8	NNC	ENSMUSG00000063334.17	novel	5023	10	NA	NA	2690	-804	intron_retention	FALSE	non_canonical	0	0	junction_4	138.754371139089	1	195	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATGCAATTAAAGTATT	NA	False	NA	NA	False	NA	NA	NA	111811387	111821995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111812782_111813016_111813143_111813219_111813304_111814995_111815047_111815783_111815963_111818705_111818784_111818868_111818963_111820443
47248	chr19	+	3032	8	ISM	ENSMUSG00000025178.10	ENSMUST00000235932.2	1939	10	10211	6	10187	0	intron_retention	FALSE	canonical	3	416	junction_7	30.2263569267159	141	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGACCTCTCTGTCCAGT	NA	False	NA	NA	False	NA	NA	NA	42089119	42110464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_42089277_42093296_42093429_42093768_42093923_42101481_42101544_42103475_42103576_42104323_42104458_42104945_42105006_42108231
47249	chr11	-	3053	4	FSM	ENSMUSG00000020396.9	ENSMUST00000093369.5	3994	4	934	7	934	-7	multi-exon	FALSE	canonical	3	23	junction_2	3.09120616516523	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAACTGTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	4897130	4888760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_4891416_4893850_4893976_4895110_4895311_4897057
47250	chr15	+	1616	8	FSM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	35	0	2	0	multi-exon	FALSE	canonical	3	203	junction_1	163.413086179455	157	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	76235528	76238573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
47251	chr13	+	2828	16	FSM	ENSMUSG00000074886.12	ENSMUST00000224118.2	1997	16	41	-872	41	0	multi-exon	FALSE	canonical	3	104	junction_15	96.0563723376365	127	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCCTTTTATTTC	157	False	NA	NA	False	NA	NA	NA	55593314	55608740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599515_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607596
47252	chr12	-	1607	6	FSM	ENSMUSG00000021276.11	ENSMUST00000220607.2	1579	6	-28	0	-1	0	multi-exon	FALSE	canonical	2	4	junction_3	194.982460749679	1088	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATATTAATCCTGTTG	3369	False	NA	NA	False	NA	NA	NA	110855559	110839595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110840564_110843274_110843405_110843656_110843807_110846118_110846249_110850323_110850493_110855499
47253	chr18	+	577	3	FSM	ENSMUSG00000090264.2	ENSMUST00000036765.8	744	3	161	6	161	-6	multi-exon	FALSE	canonical	2	3	junction_1	104	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTCTTGGCTCCATTG	745	False	NA	NA	False	NA	NA	NA	36797273	36798964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36797356_36798334_36798509_36798643
47255	chr5	+	764	3	Intergenic	novelGene_799	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_2	4	3	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGGAGAGAAATACTCTG	NA	False	NA	NA	False	NA	NA	NA	109624175	109625676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_109624257_109624444_109624506_109625054
47256	chrX	+	3132	21	FSM	ENSMUSG00000037005.17	ENSMUST00000077775.11	3498	21	42	324	42	-13	multi-exon	TRUE	canonical	3	24	junction_11	7.3109506905737	64	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAAACCTCTTAACCTTG	NA	False	NA	NA	False	NA	NA	NA	47197643	47225534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211_47207359_47210677_47210780_47211405_47211488_47211764_47211961_47212715_47212806_47213492_47213603_47214221_47214300_47215745_47215818_47217601_47217663_47218923_47218994_47219555_47219661_47220024_47220085_47220774_47220852_47223961_47224052_47224611
47257	chr5	-	1297	3	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	37	-55	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	839	103	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAAAAGATCAGCCCGGA	NA	False	NA	NA	False	NA	NA	NA	36954079	36952265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36953289_36953546_36953647_36953905
47258	chr2	+	1750	4	FSM	ENSMUSG00000027510.18	ENSMUST00000029014.16	1768	4	27	-9	16	0	multi-exon	FALSE	canonical	3	657	junction_1	63.0766729200793	394	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTTGAGGTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	172863721	172876527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172864064_172864584_172864709_172865119_172865175_172875298
47259	chr9	+	1659	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	29	776	-9	426	multi-exon	FALSE	canonical	3	26	junction_9	104.017354321286	240	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATGTAAGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	69896776	69914823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
47260	chr14	-	1964	8	NIC	ENSMUSG00000006289.15	novel	1308	11	NA	NA	-12	1	intron_retention	FALSE	canonical	3	62	junction_6	197.307901928091	858	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTAGGTTGTGTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	51162312	51153141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_51153356_51153608_51153708_51153798_51154162_51154256_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
47261	chr7	+	992	7	NNC	ENSMUSG00000006333.15	novel	1347	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5568.88027095414	97	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1309	False	NA	NA	False	NA	NA	NA	3707036	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3707064_3707325_3707448_3707644_3707768_3708514_3708628_3708731_3708919_3709006_3709181_3709649
47262	chr1	+	2923	5	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	6	-1942	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	115.165912925657	1	148	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAAGGAAATGTTAA	NA	False	NA	NA	False	NA	NA	NA	190795214	190816729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190812651_190812754_190814373
47263	chr13	-	1443	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	2	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311968_34312233_34312515_34312854_34312966_34313228_34313338_34314159
47264	chrX	+	3780	6	NNC	ENSMUSG00000036959.16	novel	5591	12	NA	NA	17	-237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9.64572444143	30	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGATACCCAGTACCGCAG	NA	False	NA	NA	False	NA	NA	NA	47450430	47467948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_47450540_47456295_47456387_47456645_47459878_47463926_47464066_47465873_47465955_47467820
47266	chr13	+	2444	16	NNC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	58.124922939017	1	111	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGGGTAGTTTGCATT	4765	False	NA	NA	False	NA	NA	NA	38221247	38245402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241237_38243875_38244069_38244730
47267	chr19	+	1319	9	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	1211	324	36	-324	3prime_fragment	FALSE	canonical	3	8704	junction_3	383.621700865579	1	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTCATTAAAGAAAACTGAA	2054	False	NA	NA	False	NA	NA	NA	8945615	8955519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
47268	chr4	-	3183	14	Fusion	ENSMUSG00000091237.2_ENSMUSG00000028541.15	novel	4093	13	NA	NA	-742	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	111	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCTAAGAGTTTGGTGAAA	NA	False	NA	NA	False	NA	NA	NA	117726497	117692496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_117692673_117700213_117700331_117713069_117713221_117713893_117714017_117714397_117714665_117720625_117720759_117720885_117721023_117721112_117721213_117721601_117721828_117721941_117722074_117722190_117722302_117722397_117722493_117724955_117725118_117725244
47269	chrX	-	3740	5	ISM	ENSMUSG00000085396.8	ENSMUST00000203933.3	5555	20	-224	46665	13	5605	5prime_fragment	FALSE	canonical	3	17	junction_3	18.886172190256	6	97	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATCTGACTCCTACAATC	NA	False	NA	NA	False	NA	NA	NA	49724167	49698666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_49701728_49704237_49704393_49715313_49715387_49719767_49719873_49723821
47270	chr17	-	2004	8	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	74	-244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	326.525306079336	1	64	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCAAGGCCTTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	7050109	7005683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007130_7020426_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
47271	chr3	+	2642	16	NIC	ENSMUSG00000028256.17	novel	913	7	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	28.4320632776136	9	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTAATAACAGTATA	NA	False	NA	NA	False	NA	NA	NA	144824678	144859646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_144825120_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
47272	chr7	+	1324	7	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	-12	317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	161.436950196939	48	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTTGGTGTCTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	100142531	100148826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147284_100147449_100148084_100148124_100148442
47273	chr15	+	1241	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	29	0	29	0	multi-exon	FALSE	canonical	3	465	junction_2	16.5	1657	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8059	False	NA	NA	False	NA	NA	NA	101182181	101188826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101182427_101184813_101185132_101188148
47274	chr15	+	3890	28	NNC	ENSMUSG00000087397.2	novel	920	3	NA	NA	-21571	-782	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	30	18	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCGGGTTAGGGGCGGT	NA	False	NA	NA	False	NA	NA	NA	97642858	97665812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_97643546_97644936_97645011_97645103_97645159_97646093_97646159_97646463_97646554_97647379_97647430_97647533_97647625_97647887_97648066_97648146_97648278_97648674_97648772_97651658_97651805_97652118_97652199_97654477_97654520_97655057_97655139_97655226_97655391_97655563_97655645_97655899_97655981_97656262_97656384_97656721_97656869_97657041_97657120_97657205_97657273_97657849_97657931_97658459_97658629_97658988_97659113_97659356_97659462_97659558_97659614_97664642_97664858_97665277
47275	chr8	+	2090	7	FSM	ENSMUSG00000031792.16	ENSMUST00000034245.16	1758	7	-332	0	-332	0	multi-exon	FALSE	canonical	3	182	junction_6	19.6185852927495	295	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	96058579	96074135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
47276	chr5	-	1839	1	Antisense	novelGene_ENSMUSG00000029381.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTGGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	93096336	93094497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_93094500_93096300
47277	chr14	-	3326	8	FSM	ENSMUSG00000022178.12	ENSMUST00000054487.10	3397	8	68	3	68	0	multi-exon	TRUE	canonical	3	297	junction_5	54.835933399886	93	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTGTGAGTGTATTGT	NA	False	NA	NA	False	NA	NA	NA	54814947	54804931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54806514_54806932_54807002_54807701_54807754_54807833_54807965_54809057_54809121_54809222_54809291_54810848_54810951_54813688
47279	chr4	+	2079	15	Genic_Genomic	ENSMUSG00000085885.2	novel	680	5	NA	NA	287798	10672	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGGGAAACGGCAGACA	NA	False	NA	NA	False	NA	NA	NA	25254314	25281771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_25254690_25254770_25254933_25255995_25256118_25259215_25259341_25262208_25262326_25265421_25265603_25267691_25267872_25269031_25269175_25270559_25270618_25275804_25275934_25277985_25278103_25278602_25278700_25279343_25279373_25280620_25280771_25281677
47282	chr17	-	2661	12	NNC	ENSMUSG00000024335.21	novel	4520	14	NA	NA	152	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	131.068589702535	2	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAGTTAGTTTTCTTA	8558	False	NA	NA	False	NA	NA	NA	34336017	34331003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34333961_34334047_34334239_34334335_34334551_34334641_34334781_34335171_34335310_34335881
47283	chr9	+	2273	9	NNC	ENSMUSG00000042195.10	novel	2558	8	NA	NA	242	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	58.2192783792448	25	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	NA	False	NA	NA	NA	53679063	53725438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_53679179_53705121_53705194_53705236_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
47285	chr11	-	2349	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	-44	2	-44	-2	multi-exon	FALSE	canonical	3	102	junction_6	21.3053201493586	498	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGCTGACTGCAGACCA	NA	False	NA	NA	False	NA	NA	NA	115519015	115505005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
47287	chr5	-	4523	13	ISM	ENSMUSG00000029192.18	ENSMUST00000146430.8	4582	14	2308	4	-472	0	3prime_fragment	FALSE	canonical	3	30	junction_12	21.379507322044	131	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGTTCACTGTGTACTT	NA	False	NA	NA	False	NA	NA	NA	36729361	36647951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36700520_36700642_36728639
47288	chr17	+	1460	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-21	333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3758.0696853571	10	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTATTCAAAATTAAAGT	NA	False	NA	NA	False	NA	NA	NA	6869169	6875281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6873123_6873967_6874472_6874551_6874899
47289	chr8	-	1614	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	122	36	78	-36	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	1	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAGATGTTTCAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	43759895	43748139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
47290	chr8	+	2245	10	FSM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	-73	-1	0	1	multi-exon	FALSE	canonical	3	16	junction_1	7.64489662745314	135	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGACCTGTGAGCTGTGA	9534	False	NA	NA	False	NA	NA	NA	123502243	123544620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
47291	chr15	+	1967	4	NIC	ENSMUSG00000022338.9	novel	558	5	NA	NA	0	-8	intron_retention	FALSE	canonical	3	313	junction_1	301.000922848345	48	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAAATGGGACTCTGTT	9616	False	NA	NA	False	NA	NA	NA	44291487	44299282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_44291567_44292955_44293033_44295833_44297370_44299007
47292	chr16	-	3203	23	NNC	ENSMUSG00000022680.15	novel	3178	23	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	75.4515470379052	1	148	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTAAAAGTAACTTTTGAAT	9793	False	NA	NA	False	NA	NA	NA	13720896	13653457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658317_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675360_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702486_13705560_13705635_13720778
47293	chr11	-	1905	1	ISM	ENSMUSG00000045374.19	ENSMUST00000173320.8	6908	10	66	11803	66	-4580	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGTGGACGCTCACACC	2875	False	NA	NA	False	NA	NA	NA	75345477	75343572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75343600_75345500
47294	chr11	-	2919	6	ISM	ENSMUSG00000045374.19	ENSMUST00000132442.2	3088	9	-1293	6400	-1293	817	5prime_fragment	FALSE	canonical	2	11	junction_3	4.04969134626332	8	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGCTTTGTTTTTGTT	5150	False	NA	NA	False	NA	NA	NA	75343202	75338175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75338856_75338948_75339115_75339850_75340042_75340171_75340363_75340621_75340730_75341619
47295	chr10	-	1131	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1081.82864734773	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5587	False	NA	NA	False	NA	NA	NA	79875557	79871782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79872136_79872360_79872488_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
47296	chr8	-	1274	1	Genic_Genomic	ENSMUSG00000031458.9	novel	NA	NA	NA	NA	1468	320	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATGAGTACACTGTTG	NA	False	NA	NA	False	NA	NA	NA	13935747	13934473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_13934500_13935700
47297	chr1	+	2679	11	ISM	ENSMUSG00000036104.13	ENSMUST00000037649.6	4243	24	58686	293	4386	-293	3prime_fragment	FALSE	canonical	3	115	junction_4	7.81600921186765	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAAGAGTATATA	NA	False	NA	NA	False	NA	NA	NA	127855195	127871312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_127855287_127855685_127855859_127858126_127858182_127858443_127858816_127862153_127862292_127865074_127865303_127865725_127865823_127865934_127866039_127866311_127866428_127866782_127866886_127870110
47299	chr5	-	2854	9	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-167	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	119.405231773989	1	137	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTTGAATTTTAATCT	NA	False	NA	NA	False	NA	NA	NA	5607409	5587470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596348_5596406_5597928_5598001_5605237_5605383_5606064_5606157_5607212
47300	chr2	-	2049	12	NNC	ENSMUSG00000026672.12	novel	2614	14	NA	NA	-9003	1550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	44.7767649309991	63	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGACTTCTTTTACTCTG	NA	False	NA	NA	False	NA	NA	NA	5051011	5023902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5024529_5026125_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
47301	chr15	+	4886	26	NIC	ENSMUSG00000037386.17	novel	4760	26	NA	NA	-1	172	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	11.0478233150245	28	53	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGTTATGCCACAGAAAT	NA	False	NA	NA	False	NA	NA	NA	39061731	39545508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_39061934_39155496_39155708_39208705_39209017_39300392_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
47302	chr17	+	2881	15	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	57389	5	8516	-5	3prime_fragment	FALSE	canonical	3	186	junction_4	20.6620029848739	117	25	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCATCCACAGGGTCATAC	8272	False	NA	NA	False	NA	NA	NA	27333666	27341192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
47303	chr19	-	2818	3	ISM	ENSMUSG00000025050.9	ENSMUST00000026032.7	2159	10	9199	0	7782	0	3prime_fragment	FALSE	canonical	3	522	junction_2	60.5	209	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGGTGTGTTGACATA	NA	False	NA	NA	False	NA	NA	NA	47030144	47022055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_47023125_47025676_47025764_47028482
47304	chr2	-	4458	29	FSM	ENSMUSG00000034848.18	ENSMUST00000102718.10	4470	29	7	5	7	-5	multi-exon	TRUE	canonical	1	2	junction_7	6.12653562590721	22	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATCTGGTTTATATTTT	NA	False	NA	NA	False	NA	NA	NA	66086954	66014675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_66015188_66016497_66016566_66018603_66018725_66021902_66022128_66028011_66028208_66031466_66031629_66031816_66031968_66037795_66037878_66038997_66039109_66040335_66040525_66047528_66047636_66052997_66053137_66053858_66053970_66054419_66054493_66056249_66056489_66057074_66057297_66059325_66059484_66061632_66061763_66065386_66065588_66065916_66066015_66066564_66066758_66068130_66068230_66069866_66069952_66072974_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
47305	chr7	-	3042	22	NIC	ENSMUSG00000062444.16	novel	3806	26	NA	NA	26	-2643	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	20.0466575948616	1	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGACTCAACCCAGGCAGC	7666	False	NA	NA	False	NA	NA	NA	81143647	81113023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81143255
47306	chr7	+	1798	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	1	66	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	371	False	NA	NA	False	NA	NA	NA	44465807	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478165_44478790
47307	chr10	-	2654	12	Antisense	novelGene_ENSMUSG00000020185.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCTCTGGCGCCTTGAGA	NA	False	NA	NA	False	NA	NA	NA	110618248	110581327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_110581666_110582188_110582284_110589939_110590215_110595672_110595846_110599785_110600079_110601476_110601636_110602977_110603112_110610501_110610687_110611177_110611250_110614679_110615162_110616625_110616881_110618055
47308	chr5	-	1900	11	NNC	ENSMUSG00000029545.14	novel	1870	10	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	171.377244697188	556	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9799	False	NA	NA	False	NA	NA	NA	115257380	115248357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115256835_115256891_115257283
47309	chr11	-	2185	3	Intergenic	novelGene_2246	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	12	junction_2	7	118	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATCTATTGCATACCAT	NA	False	NA	NA	False	NA	NA	NA	31937016	31930698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_31932543_31934463_31934750_31936961
47310	chr1	+	2844	12	NNC	ENSMUSG00000026199.18	novel	2770	13	NA	NA	22	-14	intron_retention	FALSE	canonical	1	5	junction_5	35.2145724906959	15	48	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGCAAGAAAACTGTGT	98	False	NA	NA	False	NA	NA	NA	75168857	75176017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75172357_75172444_75172593_75172966_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
47311	chr9	-	2802	14	NIC	ENSMUSG00000010660.4	novel	2715	15	NA	NA	88	-9	intron_retention	FALSE	canonical	3	6	junction_13	9.41231724796457	10	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATAAATCCTTCTAGTC	2926	False	NA	NA	False	NA	NA	NA	118922482	118900603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118922425
47312	chr14	+	1066	7	Antisense	novelGene_ENSMUSG00000041028.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTAATTCTTGTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	36843907	36855198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_36844183_36847115_36847287_36847853_36848051_36849546_36849653_36852592_36852746_36853510_36853611_36855134
47314	chr1	+	1944	1	NIC	ENSMUSG00000026254.18	novel	3394	7	NA	NA	21658	-2601	mono-exon	FALSE	NA	NA	NA	NA	NA	3	82	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCACAAGCTGGCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	87163665	87165609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_87163700_87165600
47315	chr13	-	3310	14	NIC	ENSMUSG00000021668.16	novel	4225	15	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	3	4	junction_2	10.888352171828	44	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACACTTATTGACTGTCA	NA	False	NA	NA	False	NA	NA	NA	96678996	96617200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_96618763_96618965_96619000_96623315_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
47316	chr9	-	1186	8	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	63	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGGAAGGAATAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	64085801	64082104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64082588_64082873_64083007_64083375_64083495_64084220_64084350_64084603_64084793_64085147_64085286_64085608
47317	chr11	-	1357	5	NNC	ENSMUSG00000019173.12	novel	1915	6	NA	NA	12	-255	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	62.8987281270456	5	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTTGTCTTCCTCGTCCTT	NA	False	NA	NA	False	NA	NA	NA	100628990	100606091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100628899
47318	chr8	-	1934	11	NNC	ENSMUSG00000040263.17	novel	2078	12	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	67.0558722260773	1	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTAAGGTTTTCTTTCTTC	442	False	NA	NA	False	NA	NA	NA	122556302	122523074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548041_122548098_122556120
47319	chr8	+	1910	5	FSM	ENSMUSG00000074247.11	ENSMUST00000124745.8	1933	5	16	7	4	-7	multi-exon	FALSE	canonical	2	515	junction_4	131.476946648452	326	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCGCCCATCCTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	71921858	71928735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71926418_71926481_71927131
47320	chr7	+	1595	8	ISM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	64	0	64	0	intron_retention	FALSE	canonical	3	645	junction_5	37.0355593053652	2476	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28524705	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813
47322	chr11	-	1108	6	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-94	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8488.43133682543	2	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACAAGTTTAATATGAAG	6373	False	NA	NA	False	NA	NA	NA	69812110	69807564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808850_69810092_69810163_69811988
47324	chr1	+	1366	7	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	-2	intron_retention	FALSE	canonical	3	3085	junction_3	961.050062287195	266	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGAACTGTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
47325	chr7	+	2193	7	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	27	-5	intron_retention	FALSE	canonical	3	130	junction_4	40.3460723683924	1	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCAAGAGATGTCTGAGA	NA	False	NA	NA	False	NA	NA	NA	30014267	30018460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30017468_30018097_30018157_30018248
47326	chr10	-	1020	5	NIC	ENSMUSG00000034758.13	novel	2015	14	NA	NA	-1	-275	intron_retention	FALSE	canonical	3	36	junction_1	3.64005494464026	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAACAGCCTGAGTGAC	NA	False	NA	NA	False	NA	NA	NA	81436710	81431337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
47327	chr17	-	1683	9	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	306	junction_7	21.8288799529431	1183	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	24382704	24374806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24375060_24375544_24375647_24376501_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382307_24382555
47328	chr14	-	679	1	FSM	ENSMUSG00000075581.6	ENSMUST00000100510.6	747	1	109	-41	109	41	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAATAGTAACTA	NA	False	NA	NA	False	NA	NA	NA	74034621	74033942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_74033900_74034600
47329	chr3	-	2862	23	NNC	ENSMUSG00000028041.18	novel	2975	23	NA	NA	39	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	48.1584849161753	119	43	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGCTCCTGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	89257227	89246950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89247261_89247361_89247487_89247707_89247780_89248814_89248885_89249008_89249051_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
47332	chr4	+	3161	3	FSM	ENSMUSG00000028654.14	ENSMUST00000106252.9	3293	3	132	0	-23	0	multi-exon	FALSE	canonical	3	37	junction_1	34.5	61	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGTGGGGGTAGCAT	3603	False	NA	NA	False	NA	NA	NA	122889868	122896278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_122889944_122890306_122890812_122893697
47333	chr3	+	1663	6	NNC	ENSMUSG00000053931.12	novel	2214	6	NA	NA	5	1	intron_retention	FALSE	non_canonical	0	0	junction_2	2128.37220429135	2	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGATTACATGTGTACT	NA	False	NA	NA	False	NA	NA	NA	121220150	121251599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220478_121243597_121243674_121245042_121245170_121245531_121245649_121248595_121248743_121250730
47334	chr3	-	1640	9	Antisense	novelGene_ENSMUSG00000118506.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	24	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89973183	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960915_89963511_89963632_89963835_89963887_89965856_89965958_89966047_89966108_89968944_89969435_89971714_89971861_89972813
47335	chr4	+	1034	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAGTTGAGGTCAATGAA	NA	False	NA	NA	False	NA	NA	NA	91739750	91740784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739800_91740800
47336	chr12	-	3293	20	NNC	ENSMUSG00000033530.9	novel	3446	20	NA	NA	3195	0	intron_retention	FALSE	canonical	0	0	junction_19	54.0071299283946	135	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGCTTTTGTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	100483755	100267028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_100268030_100291802_100292006_100298837_100298979_100314194_100314293_100321261_100321379_100339802_100339964_100342434_100342508_100348379_100348438_100350405_100350524_100352114_100352220_100353369_100353454_100369615_100369754_100373258_100373323_100381393_100381567_100385750_100385830_100413118_100413241_100432438_100432570_100461530_100461700_100466334_100466490_100483652
47337	chr9	-	1655	2	Intergenic	novelGene_1052	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	506	39	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGCTGTCTGACTGAGA	NA	False	NA	NA	False	NA	NA	NA	57119193	57117240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_57118396_57118693
47338	chr8	-	2201	17	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGACAGCGCCGTCCCGG	NA	False	NA	NA	False	NA	NA	NA	107649693	107620275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107620343_107621221_107621384_107624691_107624893_107625080_107625157_107627474_107627564_107630857_107631077_107632756_107632927_107633019_107633110_107634833_107634925_107637567_107637637_107638855_107638981_107639979_107640135_107642785_107642889_107644213_107644307_107645248_107645437_107648802_107648914_107649501
47339	chr7	+	2105	12	ISM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	630	1	-18	0	3prime_fragment	FALSE	canonical	3	60	junction_1	50.8389126685683	284	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	127070172	127075930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
47342	chr7	-	3398	13	FSM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	43	2	43	-2	multi-exon	FALSE	canonical	3	10	junction_1	4.11214326382511	41	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGATTGTTTTTCATTGG	NA	False	NA	NA	False	NA	NA	NA	66077222	66040639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_66042510_66048435_66048511_66049825_66049984_66051718_66051884_66055721_66055907_66057548_66057652_66058913_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
47343	chr7	-	2816	1	NIC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	-608	-71	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTATTTTTATTGTG	NA	False	NA	NA	False	NA	NA	NA	89606754	89603938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_89603900_89606800
47344	chr9	-	3617	21	NNC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	122.062729774489	1	206	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7612	False	NA	NA	False	NA	NA	NA	107749921	107650761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668207_107668365_107668950_107669218_107673675_107673737_107677893_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
47345	chr4	+	2316	6	FSM	ENSMUSG00000066026.15	ENSMUST00000154208.8	2337	6	-551	572	-301	-2	multi-exon	FALSE	canonical	3	137	junction_1	25.4982352330509	152	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGCTTCCTTCGTTCAC	5395	False	NA	NA	False	NA	NA	NA	144619095	144654207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
47346	chr8	-	1469	8	NIC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	3	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	220.836720549045	7	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTGGTACTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83500771	83490248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_83491121_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497967_83497988_83499508_83499641_83500685
47347	chr9	+	2120	11	NNC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	264.391452206761	61	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799573	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20799614_20799702_20800401_20800606_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
47348	chr10	-	1700	10	ISM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	928	457	188	-457	3prime_fragment	FALSE	canonical	3	645	junction_7	44.1926199078646	10	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAATTGGTGTGCTCATTT	NA	False	NA	NA	False	NA	NA	NA	13067984	13054340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851
47349	chr9	-	2937	6	ISM	ENSMUSG00000032217.14	ENSMUST00000213208.2	3293	9	10835	19	10723	-13	3prime_fragment	FALSE	canonical	3	217	junction_2	46.5248320792241	54	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTATATTTCTATTGTCT	NA	False	NA	NA	False	NA	NA	NA	70350405	70332724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_70334390_70336833_70336938_70338212_70338309_70339218_70339312_70348036_70348164_70349553
47351	chr2	-	2151	3	NIC	ENSMUSG00000027566.16	novel	914	7	NA	NA	-4	-144	intron_retention	FALSE	canonical	3	4468	junction_1	116.5	2	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGGCGGGATCAGCCGC	NA	False	NA	NA	False	NA	NA	NA	179684207	179678755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179680643_179681145_179681273_179684070
47352	chr10	+	2561	15	NNC	ENSMUSG00000019849.12	novel	10933	15	NA	NA	32	-8311	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	221.308827069269	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATAGCTCAATGAAGTTA	NA	False	NA	NA	False	NA	NA	NA	44943330	45034983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_44943472_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973582_44983867_44983974_44991158_44991351_44996738_44996937_45002059_45002164_45024080_45024218_45026531_45026627_45029150_45029283_45031611_45031769_45034327
47353	chr6	+	3064	17	NIC	ENSMUSG00000029629.18	novel	727	6	NA	NA	-12	-23	combination_of_known_junctions	FALSE	canonical	3	33	junction_16	37.5349836818934	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATAAAAAAATGATAAAAC	7	True	NA	NA	False	NA	NA	NA	11907870	12007989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_11908017_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12007703
47354	chr14	-	4918	29	ISM	ENSMUSG00000025558.20	ENSMUST00000040700.9	7803	54	77037	8	-16136	-8	3prime_fragment	FALSE	canonical	3	13	junction_10	14.5017592177006	31	68	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACACTGAATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	121858792	121779565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121814758_121814837_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829361_121831747_121831796_121832953_121833021_121835053_121835166_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706
47355	chr5	+	1971	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1113.42927480824	1	108	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATAACAATATATTCTCGC	756	False	NA	NA	False	NA	NA	NA	77099623	77115343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099671_77104412_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
47356	chr15	-	1546	9	NIC	ENSMUSG00000022617.16	novel	1416	10	NA	NA	4	-10	intron_retention	FALSE	canonical	3	62	junction_3	111.432434685777	112	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATAAACTTAAACAAATAC	1653	False	NA	NA	False	NA	NA	NA	89313629	89310579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89313031_89313251_89313361_89313579
47357	chr17	+	1566	5	FSM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	-9	-13	2	-13	multi-exon	FALSE	canonical	3	354	junction_1	35.2233942146409	811	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACCTTTAAAATGACTGG	4919	False	NA	NA	False	NA	NA	NA	33848065	33850677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33850438_33850515
47358	chrX	+	3354	10	NNC	ENSMUSG00000000134.18	novel	3277	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	98.2009780947493	1	149	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	7628806	7641438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7629300_7631745_7631860_7632803_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
47359	chr7	-	2245	5	ISM	ENSMUSG00000039428.12	ENSMUST00000156153.2	696	6	2831	-1829	2831	-313	3prime_fragment	FALSE	canonical	3	153	junction_2	17.5570498660794	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCATTTCTGTGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	88800677	88789234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_88791179_88792988_88793057_88793864_88793964_88797177_88797255_88800620
47360	chr17	+	2525	4	NNC	ENSMUSG00000023902.19	novel	548	4	NA	NA	-662	-1	intron_retention	FALSE	canonical	0	0	junction_3	132.701000582345	1	79	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGATTTTTTTACTTT	1329	False	NA	NA	False	NA	NA	NA	23825801	23829992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_23826619_23827081_23827140_23828240_23828435_23828536
47362	chr4	-	1480	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	4	0	4	0	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	1358	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	133005099	132993355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
47363	chr7	+	630	1	FSM	ENSMUSG00000066543.9	ENSMUST00000119541.2	555	1	-36	-39	-36	39	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAATTC	NA	False	NA	NA	False	NA	NA	NA	35817662	35818292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_35817700_35818300
47364	chr17	-	2160	2	FSM	ENSMUSG00000040048.15	ENSMUST00000141324.8	430	2	-1737	7	8	-7	multi-exon	FALSE	canonical	3	2001	junction_1	0	20	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAACTGTGTTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	24943360	24941040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24941195_24941354
47365	chr8	+	1760	5	NNC	ENSMUSG00000031562.17	novel	799	6	NA	NA	19259	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.364622140646	5	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACGTGTTTGCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	48582504	48594697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_48582596_48582706_48582842_48590292_48590410_48591816_48591914_48593377
47366	chr8	+	1582	7	Antisense	novelGene_ENSMUSG00000003814.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGACGCGGCCACCGCCG	NA	False	NA	NA	False	NA	NA	NA	85568720	85573495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85569414_85571008_85571127_85571207_85571412_85571498_85571599_85572491_85572697_85572877_85572981_85573336
47369	chr10	+	2336	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	60	2	60	-2	multi-exon	FALSE	canonical	3	24	junction_4	4.81534007106456	72	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAAGGCTTGGCTGTTC	NA	False	NA	NA	False	NA	NA	NA	24471399	24474574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
47370	chr9	+	1494	12	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	123	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1782.75507372509	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108766082	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108766225_108771151_108771239_108773111_108773237_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
47371	chr2	-	3339	3	FSM	ENSMUSG00000075040.10	ENSMUST00000155045.2	667	3	58	-2730	58	121	multi-exon	FALSE	canonical	3	16	junction_2	4.5	8	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCCTGAGTATCTATATG	NA	False	NA	NA	False	NA	NA	NA	91478522	91473892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91476819_91477940_91478192_91478360
47372	chr11	+	866	7	NNC	ENSMUSG00000020372.16	novel	1542	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2443.06697615927	41	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691186	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_48691352_48693114_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
47373	chr1	+	2310	5	FSM	ENSMUSG00000026111.16	ENSMUST00000144617.8	808	5	7	-1509	-2	0	multi-exon	FALSE	canonical	3	30	junction_1	199.60774033088	70	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	NA	NA	NA	37469264	37478068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457
47374	chr5	+	1638	10	Antisense	novelGene_ENSMUSG00000001082.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCGCATCCCCTGCCCAG	NA	False	NA	NA	False	NA	NA	NA	34791227	34794086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_34791361_34791476_34791563_34791634_34791688_34791767_34791857_34791933_34791991_34792196_34792306_34792393_34792506_34792714_34793467_34793751_34793848_34793935
47375	chr4	-	2465	13	NIC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	-26	365	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	20.9103576142436	125	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACACACAGGTCTGCAGC	4279	False	NA	NA	False	NA	NA	NA	135221843	135178831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135179884_135182183_135182216_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
47376	chr5	+	1806	3	Intergenic	novelGene_834	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	32	259	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGAGCATGCCATCTGT	694	False	NA	NA	False	NA	NA	NA	115342013	115344405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_115342214_115342747_115344131_115344182
47377	chr10	-	1224	4	FSM	ENSMUSG00000000711.4	ENSMUST00000220593.2	1629	4	-34	439	-27	-439	multi-exon	FALSE	canonical	3	160	junction_3	13.5728487143349	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCCAAATAAAGAAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	128532160	128518110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128518816_128519063_128519216_128522616_128522878_128532054
47378	chr10	-	1426	13	NNC	ENSMUSG00000040043.18	novel	1481	13	NA	NA	-130	82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	86.8208164363056	9	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTTTGCAAAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	128012478	127969110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974078_127979324_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
47379	chr11	-	2777	5	NNC	ENSMUSG00000042826.14	novel	3039	5	NA	NA	1223	0	intron_retention	FALSE	canonical	1	1	junction_4	4.96865172858795	40	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGAGTGTTATCTGACATT	4761	False	NA	NA	False	NA	NA	NA	69691319	69686898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69689099_69689389_69689589_69690177_69690282_69690491_69690603_69691156
47380	chr8	+	2626	5	ISM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	872	-660	-803	624	3prime_fragment	FALSE	canonical	3	94	junction_4	7.75806032459145	53	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTAAGTAGTGCATTAAT	NA	False	NA	NA	False	NA	NA	NA	71859531	71863172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
47381	chr7	+	1681	1	Antisense	novelGene_ENSMUSG00000031026.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTCATTGGCTAACAACAA	NA	False	NA	NA	False	NA	NA	NA	109048253	109049934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_109048300_109049900
47382	chr4	+	2357	4	Antisense	novelGene_ENSMUSG00000078495.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	146	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACAACTGCAGCTTAAGG	NA	False	NA	NA	False	NA	NA	NA	147838625	147860199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147840693_147842159_147842285_147845676_147845787_147860144
47383	chr6	+	1667	6	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	1	0	intron_retention	FALSE	canonical	3	33	junction_2	44.0336235165811	32	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7108	False	NA	NA	False	NA	NA	NA	125016799	125026228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024904_125025138_125025201_125025330
47384	chr4	+	1914	11	NNC	ENSMUSG00000028683.15	novel	1369	10	NA	NA	83	1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	263.167646187749	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTAGGTGTGGCTCAGTG	NA	False	NA	NA	False	NA	NA	NA	116876687	116944043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116877240_116879351_116879510_116885607_116885754_116901632_116901793_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
47385	chr6	+	1490	8	Antisense	novelGene_ENSMUSG00000106676.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGAGCAAGGCCACGACC	NA	False	NA	NA	False	NA	NA	NA	32769157	33037119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_32769862_32780824_32780958_32869220_32869310_32945134_32945254_32975826_32975917_32985416_32985500_33026271_33026360_33036935
47386	chr16	+	1578	5	NNC	ENSMUSG00000044442.12	novel	1700	5	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	55.3821947921893	63	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGAACTTCAGCCTT	NA	False	NA	NA	False	NA	NA	NA	87151121	87165622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164459
47388	chr7	-	2009	15	Antisense	novelGene_ENSMUSG00000030451.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACACTCCCTGCAGGAGCC	NA	False	NA	NA	False	NA	NA	NA	55753498	55699963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_55700048_55700600_55700693_55717727_55717845_55722038_55722176_55734733_55734955_55737085_55737183_55737998_55738161_55740661_55740772_55742284_55742459_55744012_55744185_55747122_55747311_55748074_55748235_55749826_55749984_55750074_55750189_55753474
47390	chr5	-	1872	7	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-15	-2	intron_retention	FALSE	canonical	3	151	junction_2	390.181759639729	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTTTTCCTGCGTCAG	NA	False	NA	NA	False	NA	NA	NA	100186769	100182587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100183599_100183962_100184055_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
47391	chr5	+	1377	7	NNC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2266.00718347395	5	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTGGTGGTGTCAATTA	NA	False	NA	NA	False	NA	NA	NA	104582986	104588917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587398_104588110
47393	chr7	-	2088	9	ISM	ENSMUSG00000060601.14	ENSMUST00000107911.8	1988	10	1	-1	1	0	intron_retention	FALSE	canonical	3	153	junction_6	154.809560428289	309	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	NA	False	NA	NA	NA	44203371	44199039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002
47394	chr13	+	1614	4	NNC	ENSMUSG00000078941.10	novel	1222	3	NA	NA	-9	539	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	750.138801970823	2892	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGACTTCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	100787860	100793106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_100787954_100790698_100790792_100791541_100792630_100792766
47395	chr5	-	1551	6	NIC	ENSMUSG00000029128.13	novel	1635	7	NA	NA	-4	-1	combination_of_known_splicesites	FALSE	canonical	3	38	junction_4	194.631549343882	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTTTTGGGATTTTCA	NA	False	NA	NA	False	NA	NA	NA	41865504	41782320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41860780_41860878_41865247
47396	chr15	+	1431	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	1	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAATTATCCGACTTAC	4	True	NA	NA	False	NA	NA	NA	10486103	10493756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
47397	chr2	+	2844	18	NIC	ENSMUSG00000038241.17	novel	7919	34	NA	NA	0	2114	intron_retention	FALSE	canonical	3	36	junction_1	10.513461464823	25	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGGTGGATGTGATTGG	NA	False	NA	NA	False	NA	NA	NA	155798491	155818479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477_155809575_155810674_155810783_155811205_155811365_155811914_155812157_155812632_155812816_155813867_155814013_155815262_155815410_155816172_155816404_155817590_155817785_155818003_155818132_155818308
47398	chr12	-	2156	7	NNC	ENSMUSG00000021176.7	novel	1122	7	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	38.8186667582606	6	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATATCATATTTATGGTA	NA	False	NA	NA	False	NA	NA	NA	99849682	99683794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_99685363_99820868_99820960_99821412_99821524_99821796_99821899_99844615_99844662_99849020_99849117_99849540
47400	chr6	-	2318	12	NNC	ENSMUSG00000030254.17	novel	2577	12	NA	NA	0	32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	99.0838195962647	1	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATATTGCATTTGTCA	NA	False	NA	NA	False	NA	NA	NA	112673609	112596873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112597866_112621548_112621709_112626555_112626664_112642259_112642300_112649084_112649155_112652701_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
47401	chr4	+	2471	2	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	44232	6	44206	-6	3prime_fragment	FALSE	canonical	3	455	junction_1	0	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAATTTTTGTAGTACTA	NA	False	NA	NA	False	NA	NA	NA	52483474	52488254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_52484188_52486496
47402	chr13	-	1644	11	ISM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	-12	1240	-12	-561	5prime_fragment	FALSE	canonical	3	644	junction_2	45.6219245538809	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGTTCAGCACACCCAGA	NA	False	NA	NA	False	NA	NA	NA	100867459	100840378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
47403	chr3	-	1058	7	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	681.700671523474	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7525	False	NA	NA	False	NA	NA	NA	89905669	89902759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905573
47404	chr6	+	1431	4	ISM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	2489	-2	2489	2	3prime_fragment	FALSE	canonical	3	1181	junction_2	49.8687165354081	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTTCCCTGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	145563971	145567207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_145564182_145564457_145564607_145564908_145565590_145566816
47405	chr2	-	1881	13	FSM	ENSMUSG00000039648.15	ENSMUST00000044038.10	1876	13	-17	12	-17	-5	multi-exon	FALSE	canonical	3	91	junction_12	20.7811011899434	265	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACCCTCAAGGCAGCTT	NA	False	NA	NA	False	NA	NA	NA	30095876	30075147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
47407	chr14	-	2627	12	NNC	ENSMUSG00000000958.11	novel	638	6	NA	NA	-159	6935	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.3648018547195	1	79	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACACAGGCTTCTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	54655396	54599963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54600966_54601165_54601216_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54654045_54654228_54655357
47408	chr13	+	2800	16	NNC	ENSMUSG00000074886.12	novel	2994	16	NA	NA	39	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	163.600651995441	126	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGCCTGCCTCCTTTTA	155	False	NA	NA	False	NA	NA	NA	55593312	55608736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55593374_55597120_55597217_55598077_55598191_55598319_55598398_55598740_55598842_55599141_55599235_55599332_55599397_55599543_55599657_55599947_55600139_55600859_55600898_55600984_55601075_55602129_55602339_55602418_55602557_55606605_55606744_55606825_55606961_55607594
47409	chr10	+	2056	7	ISM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	8878	343	45	-343	3prime_fragment	FALSE	canonical	3	501	junction_1	49.2050697478308	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCCTGCCTGGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	80914746	80918050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
47410	chr4	-	2482	9	Antisense	novelGene_ENSMUSG00000028243.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	25	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCCCCGGACCGCGACT	NA	False	NA	NA	False	NA	NA	NA	6217449	6191111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_6191212_6196408_6196511_6197995_6198094_6202293_6202438_6203770_6203861_6204563_6204673_6208804_6208942_6214636_6214800_6215910
47411	chr19	-	1620	5	NNC	ENSMUSG00000007338.11	novel	1764	4	NA	NA	0	-19	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	396.734798070449	2484	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATCATCTGAAACTCT	NA	False	NA	NA	False	NA	NA	NA	6107788	6103670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6104146_6104243_6105013_6105105_6105231_6106958_6107110_6107688
47413	chr5	+	1830	5	NIC	ENSMUSG00000038722.18	novel	867	6	NA	NA	-5	0	intron_retention	FALSE	canonical	3	705	junction_1	68.3570588893349	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCTACATTCTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	145077212	145084881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145077253_145078114_145079378_145081708_145081832_145083252_145083420_145084644
47414	chr6	+	1676	3	ISM	ENSMUSG00000003031.15	ENSMUST00000204807.2	1757	4	-25	2265	-25	-2265	5prime_fragment	FALSE	canonical	0	0	junction_1	2.5	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAAGTGTGGATTTTTC	NA	False	NA	NA	False	NA	NA	NA	134897450	134900018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_134897513_134897843_134898358_134898918
47415	chr6	-	1247	8	NNC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	32	-51	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_7	726.576063127739	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGATTTGTTGGTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	124942221	124935426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942114
47418	chrX	+	1374	11	NNC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	1	-224	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_8	106.530981409166	1035	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	NA	NA	NA	163052507	163155783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163150434_163150515_163152041_163152109_163155448
47419	chrX	+	1573	4	NIC	ENSMUSG00000031107.7	novel	1747	6	NA	NA	320	-1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	173.190325621522	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGGGCATTTGGTCCACTC	NA	False	NA	NA	False	NA	NA	NA	47784200	47799599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_47784313_47795181_47795312_47797766_47797951_47798452
47420	chr5	-	1238	7	NIC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-4	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	502.780076728937	288	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGTAGTTTTAAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	129856281	129842619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129853893_129854006_129856085
47421	chr1	-	2074	5	NNC	ENSMUSG00000026566.16	novel	2171	5	NA	NA	-607	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	333.806362282087	9	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	165462714	165419808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165462592
47422	chr9	-	1711	10	NIC	ENSMUSG00000070319.7	novel	1101	11	NA	NA	0	-4	intron_retention	FALSE	canonical	3	2112	junction_9	219.675068686615	177	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCACTTTGTCCTGCTTATT	5156	False	NA	NA	False	NA	NA	NA	20809902	20805648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
47423	chr19	-	3211	1	NIC	ENSMUSG00000063904.5	novel	2683	18	NA	NA	4626	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGCAGTGTATGTTTCT	1260	False	NA	NA	False	NA	NA	NA	4960469	4957258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4957300_4960500
47424	chr14	-	3821	20	NNC	ENSMUSG00000022020.16	novel	13223	20	NA	NA	42	-330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	64.331292816615	1	210	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCTACAATAAATTATTTC	NA	False	NA	NA	False	NA	NA	NA	79628088	79571973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612287_79614807_79614964_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
47425	chr6	+	1766	12	NNC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	-38	132	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	247.993335021077	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTGTTCAGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	124640096	124681112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678551_124679436_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
47426	chr1	-	3446	8	NIC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	87	junction_6	17.9261523695273	1	109	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGCTCTTTACTATTC	5188	False	NA	NA	False	NA	NA	NA	171108761	171104566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171106888_171107003_171108097_171108247_171108343_171108446
47427	chr7	-	2576	13	FSM	ENSMUSG00000030780.16	ENSMUST00000033044.16	2627	13	51	0	-10	0	multi-exon	FALSE	canonical	3	141	junction_4	13.6897670623799	101	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGCTTCATACTGCAGGC	1157	False	NA	NA	False	NA	NA	NA	127897291	127870550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
47428	chr7	+	3527	1	FSM	ENSMUSG00000046096.8	ENSMUST00000208534.2	3158	1	2416	-2785	2416	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	59	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGCTTCTATTACTTT	1266	False	NA	NA	False	NA	NA	NA	120329962	120333489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_120330000_120333500
47429	chr15	+	2665	7	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	6	1	intron_retention	FALSE	canonical	3	197	junction_4	38.4360941477322	1	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4838	False	NA	NA	False	NA	NA	NA	76215555	76219099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216832_76216909_76217300_76217376_76218091_76218213_76218405_76218489
47430	chr6	+	1509	8	NIC	ENSMUSG00000030330.16	novel	1487	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	45.7571227866688	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7119	False	NA	NA	False	NA	NA	NA	125016810	125026228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024864_125024904_125025138_125025201_125025330
47431	chr6	+	2510	10	FSM	ENSMUSG00000046679.17	ENSMUST00000050497.14	2534	10	15	9	0	-9	multi-exon	FALSE	canonical	3	15	junction_1	6.73483664919633	58	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCAAATGGTGCCATTG	1468	False	NA	NA	False	NA	NA	NA	86415370	86447361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86415470_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
47432	chr17	-	2520	8	ISM	ENSMUSG00000024174.10	ENSMUST00000233972.2	2185	16	34	31715	-12	8875	5prime_fragment	FALSE	canonical	2	2	junction_3	8.03055389860297	2	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGATAATAGGAGTAGATG	NA	False	NA	NA	False	NA	NA	NA	56019590	55993297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_55994959_55999721_55999878_56002026_56002318_56005456_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
47433	chr4	+	2882	5	FSM	ENSMUSG00000044730.18	ENSMUST00000094769.13	2911	5	15	14	15	-13	multi-exon	FALSE	non_canonical	3	27	junction_4	9.02773504263389	64	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTATATAGGCTATATGAC	NA	False	NA	NA	False	NA	NA	NA	124830881	124838435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124831127_124832232_124832511_124834158_124834339_124836145_124836265_124836375
47434	chr10	-	1587	1	Intergenic	novelGene_3404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGGTCTATCGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	21915915	21914328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_21914300_21915900
47435	chr5	+	2766	12	FSM	ENSMUSG00000054099.12	ENSMUST00000066921.10	2784	12	14	4	6	4	multi-exon	FALSE	canonical	3	29	junction_1	8.37055050175789	137	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTGTATTTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	8472863	8504793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
47436	chr6	+	1509	8	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	0	66	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2253.05257780802	1	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATATTGGACATAATAC	5872	False	NA	NA	False	NA	NA	NA	67243994	67261361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244394_67248181_67248241_67248952_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
47439	chr13	+	688	1	Intergenic	novelGene_1400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACTTACATATAATAAAT	NA	False	NA	NA	False	NA	NA	NA	62446277	62446965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62446300_62447000
47440	chr5	+	1050	10	NNC	ENSMUSG00000029199.12	novel	1668	11	NA	NA	66	-238	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.668083088736	7	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAGAAAAGAAGAAA	7020	False	NA	NA	False	NA	NA	NA	65548973	65566312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_65548982_65551324_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
47441	chr8	-	2226	13	Antisense	novelGene_ENSMUSG00000119577.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	248	18	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGACTCGCCATGGCGCA	NA	False	NA	NA	False	NA	NA	NA	34188190	34143659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_34143710_34143757_34143817_34159914_34160009_34161548_34161619_34164112_34164261_34170286_34170343_34171489_34171600_34172624_34172706_34175569_34175730_34179367_34179478_34183823_34183953_34185019_34185164_34187175
47443	chr3	-	1676	8	FSM	ENSMUSG00000027890.18	ENSMUST00000029489.15	1707	8	31	0	3	0	multi-exon	FALSE	canonical	3	51	junction_7	25.3175747621437	280	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	NA	False	NA	NA	NA	107952179	107947723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107951952
47444	chr9	+	1952	13	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	107.832013129476	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	NA	False	NA	NA	NA	114230227	114303445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259473_114272125_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
47445	chr1	+	1373	5	Antisense	novelGene_ENSMUSG00000041879.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAAGCAGACTCTGAGAC	NA	False	NA	NA	False	NA	NA	NA	135312884	135316491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_135313222_135313670_135313742_135313956_135314545_135315110_135315247_135316250
47446	chr19	+	2486	13	NNC	ENSMUSG00000024935.12	novel	3800	12	NA	NA	-7	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	30.8692358541999	1	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGAAATACGCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	28812527	28890029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_28812733_28856412_28856554_28870234_28870328_28871853_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085_28880194_28881552_28881624_28882011_28882135_28882732_28882928_28886830_28886966_28889053
47447	chr3	-	1333	7	FSM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	-215	8	23	-8	multi-exon	FALSE	canonical	3	854	junction_6	52.4195150259477	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAAATATGTCTTGCTC	NA	False	NA	NA	False	NA	NA	NA	132389860	132366267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
47448	chr6	-	1290	8	FSM	ENSMUSG00000030246.13	ENSMUST00000239397.2	1287	8	0	-3	0	0	multi-exon	FALSE	canonical	3	685	junction_1	65.6636450839754	3532	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	142453669	142435974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
47449	chr11	+	3446	10	Antisense	novelGene_ENSMUSG00000059995.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	166	24	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCACAGCGGGCGGCAACA	NA	False	NA	80	True	NA	NA	NA	102180127	102185862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102182626_102182719_102182882_102182961_102183037_102183269_102183312_102183530_102183602_102184067_102184175_102184669_102184767_102184958_102185132_102185335_102185468_102185773
47450	chr2	+	2241	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	51.0299476342623	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTAGGTCGTTGCTTC	5135	False	NA	NA	False	NA	NA	NA	164339462	164350213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349463_164349752
47453	chrX	+	1219	2	Genic_Genomic	ENSMUSG00000083392.2	novel	1194	1	NA	NA	139	6183	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	NA	False	NA	NA	False	NA	NA	NA	111072389	111079627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_111073542_111079560
47454	chr11	+	2390	5	FSM	ENSMUSG00000018666.14	ENSMUST00000134585.8	2377	5	-13	0	-3	0	multi-exon	FALSE	canonical	3	66	junction_4	281.892155797213	1132	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	96679949	96698975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441
47456	chr9	+	1359	13	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	13	-8	combination_of_known_junctions	FALSE	canonical	3	69	junction_1	171.959055204042	422	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATACAGTAAAAAGAACCTT	9085	False	NA	NA	False	NA	NA	NA	15217522	15228258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
47457	chr1	+	1286	10	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	640.86278649264	187	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724123	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743333_59749727_59749812_59750429
47458	chr16	-	1269	5	FSM	ENSMUSG00000063445.15	ENSMUST00000115851.10	1306	5	37	0	-7	0	multi-exon	FALSE	canonical	1	3	junction_1	76.6811580507233	1253	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4833	False	NA	NA	False	NA	NA	NA	4536983	4529180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4529545_4531503_4531695_4532280_4532531_4534160_4534400_4536758
47459	chr11	-	1502	5	NIC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	-28	-5	intron_retention	FALSE	canonical	3	479	junction_4	36.9425229241318	1101	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATTTTTATCTTTGGTC	1692	False	NA	NA	False	NA	NA	NA	78402937	78397885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_78398632_78399144_78399522_78400550_78400641_78401173_78401248_78402722
47461	chr18	+	1620	3	ISM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	628	20	628	-20	3prime_fragment	FALSE	canonical	3	606	junction_2	42	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAAATGCTAAACCTGA	NA	False	NA	NA	False	NA	NA	NA	67524414	67535799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_67524504_67526015_67526127_67534379
47462	chr1	+	2157	10	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	24	-4	intron_retention	FALSE	canonical	3	5	junction_6	102.525636661469	11	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGAGCCAGCTTGGACTC	NA	False	NA	NA	False	NA	NA	NA	75412651	75419813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417131_75417187_75418118_75418254_75418373_75419257_75419544
47463	chr15	-	578	1	Intergenic	novelGene_3275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATTTTCTTCCCCATT	8058	False	NA	NA	False	NA	NA	NA	38070793	38070215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_38070200_38070800
47464	chr1	-	1683	7	NIC	ENSMUSG00000013997.11	novel	1335	7	NA	NA	9	0	intron_retention	FALSE	canonical	3	10	junction_6	48.6646689087679	57	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	908	False	NA	NA	False	NA	NA	NA	171173184	171169811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171172758
47466	chr8	+	1131	7	NNC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-10	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	383.407818850314	50	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGAGTATTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	86026541	86034707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032907_86034214
47467	chr16	+	2221	1	Antisense	novelGene_ENSMUSG00000071533.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGAGGCAGAGGCAGGAG	NA	False	NA	NA	False	NA	NA	NA	55844613	55846834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_55844600_55846800
47469	chr2	+	1409	11	NNC	ENSMUSG00000027018.12	novel	1899	11	NA	NA	-65	-107	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	663.853116284017	2	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5053	False	NA	NA	False	NA	NA	NA	71219538	71271859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264523_71264551_71269039_71269157_71271511
47470	chr10	+	2714	2	ISM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	8047	6	7810	-6	3prime_fragment	FALSE	canonical	3	160	junction_1	0	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATTTGGTTGAGTATT	1772	False	NA	NA	False	NA	NA	NA	20231562	20237044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_20233513_20236280
47471	chr12	-	2688	10	NNC	ENSMUSG00000020962.15	novel	6064	9	NA	NA	-31	-62	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_7	431.725478619098	25	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGTTTCTTGTGTTTAC	1214	False	NA	NA	False	NA	NA	NA	91556814	91525523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91552148_91552230_91553473_91553576_91556308
47472	chr11	+	1271	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	8	-38	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCTGGACAGTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653627	120655207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653930_120654238
47473	chr12	-	1198	3	FSM	ENSMUSG00000041359.15	ENSMUST00000175652.2	535	3	77	-740	0	0	multi-exon	FALSE	canonical	3	551	junction_2	399	35	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	NA	False	NA	NA	NA	105188975	105183016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_105183961_105184481_105184552_105188791
47474	chr10	+	1840	2	ISM	ENSMUSG00000038240.14	ENSMUST00000160108.8	1671	3	-34	46459	-3	-46056	5prime_fragment	FALSE	canonical	3	76	junction_1	0	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGTAAACGCCGGCTGT	NA	False	NA	NA	False	NA	NA	NA	43097478	43176056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_43098057_43174794
47475	chr15	+	3894	12	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	5	47332	5	12745	intron_retention	FALSE	canonical	3	47	junction_4	7.60382678775509	30	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGCCCCCAGAGAACACA	2912	False	NA	NA	False	NA	NA	NA	88867116	88892019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899
47476	chr6	-	2299	8	NIC	ENSMUSG00000029826.15	novel	3400	9	NA	NA	46	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	29.5047557564013	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGAAAACTTTGCAGTTGG	9710	False	NA	NA	False	NA	NA	NA	38331492	38292610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38313346_38313600_38317154_38317291_38330849
47478	chrX	-	1500	1	Antisense	novelGene_ENSMUSG00000095180.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGTGACGGCACAGGGGG	6201	False	NA	NA	False	NA	NA	NA	36897299	36895799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36895800_36897300
47479	chr5	+	2875	13	FSM	ENSMUSG00000029314.15	ENSMUST00000031255.15	2884	13	0	9	0	-9	multi-exon	FALSE	canonical	3	20	junction_3	3.86939558874797	54	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTAAATGAGTGTTGCA	NA	False	NA	NA	False	NA	NA	NA	100994084	101046956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100994228_100994520_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
47480	chr7	-	1951	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	-89	13	-68	-13	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	2501	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTCTTAAACTTGCTT	NA	False	NA	NA	False	NA	NA	NA	16121799	16060987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
47481	chr11	-	2482	3	ISM	ENSMUSG00000025144.18	ENSMUST00000026137.8	692	4	3	4	3	-4	intron_retention	FALSE	canonical	3	880	junction_2	8.5	59	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGGCCTGCTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	120604561	120601772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120602133_120602215_120602305_120602528
47482	chr4	-	4245	11	NNC	ENSMUSG00000028599.11	novel	3818	10	NA	NA	-14735	352	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_10	25.2934774200781	5	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAACTTCACTTTTCACCT	NA	False	NA	NA	False	NA	NA	NA	144988175	144939680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144975363_144975473_144988062
47484	chr13	+	2391	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	14	2048	14	1288	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	100	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCCCTGTGTCTTATT	NA	False	NA	NA	False	NA	NA	NA	3684045	3701774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
47485	chr14	+	1246	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1272	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	20	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359964	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63379760_63380414
47487	chr12	+	3864	3	FSM	ENSMUSG00000021070.7	ENSMUST00000001652.7	3792	3	-74	2	-74	-2	multi-exon	FALSE	canonical	3	6	junction_1	4.5	29	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATAGTGTTTCCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	105529410	105561494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105529508_105554455_105554560_105557831
47488	chr10	+	3049	2	FSM	ENSMUSG00000050953.11	ENSMUST00000068581.9	3071	2	5	17	3	-17	multi-exon	FALSE	canonical	3	36	junction_1	0	51	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAATTTAGTATAATAAA	NA	False	NA	NA	False	NA	NA	NA	56253430	56266494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_56253615_56263629
47489	chr13	+	1340	3	FSM	ENSMUSG00000021591.9	ENSMUST00000022082.8	1345	3	1	4	1	-4	multi-exon	FALSE	canonical	3	287	junction_1	16	1084	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATGACTTTTGTCCGGTT	NA	False	NA	NA	False	NA	NA	NA	75987987	75998266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_75988295_75995288_75995418_75997362
47490	chr16	+	3026	9	FSM	ENSMUSG00000022971.19	ENSMUST00000023693.14	3047	9	21	0	21	0	multi-exon	FALSE	canonical	1	3	junction_7	21.683807322516	13	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATAGTCTTTTTGAATC	NA	False	NA	NA	False	NA	NA	NA	91169691	91202477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644_91190802_91196105_91196234_91200597
47491	chr19	+	1755	10	NNC	ENSMUSG00000024785.8	novel	1803	9	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	123.335535515875	152	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCACTGTAGTGTAAATCA	NA	False	NA	NA	False	NA	NA	NA	29078772	29121246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541_29120624_29120676
47494	chr7	-	1791	3	NIC	ENSMUSG00000061787.16	novel	383	5	NA	NA	0	-1	intron_retention	FALSE	canonical	3	8882	junction_2	2248	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGTCTGTATTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	80994975	80992481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80993549_80994058_80994757_80994949
47495	chr5	+	3972	6	NNC	ENSMUSG00000029587.17	novel	5265	5	NA	NA	-16	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	23.5762592452662	17	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGAAACAATTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	143220985	143233699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143221032_143222008_143222072_143225708_143225836_143226074_143226171_143229816_143232032_143232274
47496	chr9	+	2730	6	NIC	ENSMUSG00000032567.17	novel	1886	6	NA	NA	-25	-7	intron_retention	FALSE	canonical	3	19	junction_1	19.6916225842362	58	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAATGTCTGTATTTAT	NA	False	NA	NA	False	NA	NA	NA	105272565	105282659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_105273054_105273743_105275058_105278674_105278886_105279916_105279976_105280594_105280791_105282197
47497	chr12	+	1460	8	NNC	ENSMUSG00000021134.18	novel	3482	4	NA	NA	-40	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	841.709291033576	2	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAACTGCTTTTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	80993109	80997271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80993227_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995913_80996242_80996379_80996493
47498	chr19	+	1310	1	Intergenic	novelGene_1290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGACAGAGTCAACTGTG	NA	False	NA	NA	False	NA	NA	NA	55093332	55094642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_55093300_55094600
47499	chr9	+	2911	8	NNC	ENSMUSG00000034487.5	novel	3642	8	NA	NA	-2141	-116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	31.6582516567037	68	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCACATTTTTATAATAAGA	NA	False	NA	NA	False	NA	NA	NA	53299775	53313051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_53299878_53301734_53302022_53303214_53303432_53305235_53305433_53307143_53307339_53309219_53309325_53310986_53311382_53311638
47500	chr1	-	3020	10	NIC	ENSMUSG00000026277.15	novel	2821	11	NA	NA	-38	-13	intron_retention	FALSE	canonical	3	169	junction_6	13.6137185711081	2	113	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTGGAAATGTTCTGATG	NA	False	NA	NA	False	NA	NA	NA	93563389	93549636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
47501	chr15	+	3579	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	57	-109	57	109	multi-exon	FALSE	canonical	3	85	junction_1	11.0227038425243	312	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTCATTACATGTTAAAA	83	False	NA	NA	False	NA	NA	NA	32920925	33035190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
47502	chr1	-	1064	5	FSM	ENSMUSG00000058076.13	ENSMUST00000081560.5	815	5	-6	-243	-6	243	multi-exon	TRUE	canonical	1	3	junction_3	383.770113479411	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACTCTTTGGAATCT	462	False	NA	NA	False	NA	NA	NA	170978166	170956732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170973324_170973382_170978127
47503	chrX	-	2861	2	Fusion	ENSMUSG00000082229.2_ENSMUSG00000031325.16	novel	685	4	NA	NA	-13	0	multi-exon	FALSE	canonical	0	0	junction_1	0	24	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTTAAATGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	102355401	102227781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_102230480_102355238
47504	chrX	-	1350	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	39	1	0	-1	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTCCCAATTTCTCATT	NA	False	NA	NA	False	NA	NA	NA	139857438	139849178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
47505	chr4	+	1642	9	NIC	ENSMUSG00000028601.19	novel	1319	10	NA	NA	12	-13	intron_retention	FALSE	canonical	3	90	junction_3	231.116819757888	154	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGCAACTGTTAGCTTG	NA	False	NA	NA	False	NA	NA	NA	108022696	108036490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031372_108034269_108034321_108035567_108035616_108036103
47506	chr17	-	3469	4	FSM	ENSMUSG00000055202.12	ENSMUST00000200914.5	3536	4	12	55	12	-55	multi-exon	FALSE	canonical	3	5	junction_3	3.09120616516523	25	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTTTTCAAGCAATTGT	4496	False	NA	NA	False	NA	NA	NA	33028893	33014704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33017848_33019360_33019422_33019785_33019913_33028755
47507	chr7	+	1374	9	NNC	ENSMUSG00000073838.11	novel	1679	10	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	217.812957316593	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	126086805	126089899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126086955_126087431_126087599_126087821_126087927_126088008_126088087_126088333_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
47508	chr13	-	1826	9	NIC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	-242	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	412.140885347474	494	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	5663	False	NA	NA	False	NA	NA	NA	56283686	56221434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283614
47509	chr11	+	3973	26	NIC	ENSMUSG00000020758.16	novel	5584	38	NA	NA	-1543	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_5	5.35163526410386	38	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTCTGTCCGTTCTTCA	1698	False	NA	NA	False	NA	NA	NA	115879220	115899238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115879390_115879482_115879582_115879715_115879846_115880547_115880668_115880763_115880871_115881500_115881535_115881709_115881902_115882134_115882239_115882483_115882543_115882711_115882736_115883880_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
47510	chr7	-	1655	11	FSM	ENSMUSG00000000486.14	ENSMUST00000106314.8	1486	11	-149	-20	-149	5	multi-exon	FALSE	canonical	3	221	junction_10	48.9043965303734	797	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCGGAGTCTTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	126817819	126813613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
47511	chr16	+	1827	2	FSM	ENSMUSG00000022516.11	ENSMUST00000230224.2	660	2	-17	-1150	-1	2	multi-exon	FALSE	canonical	3	563	junction_1	0	30	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTTCTGAGTGCCATG	94	False	NA	NA	False	NA	NA	NA	4756974	4758885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4757158_4757241
47512	chr1	-	2191	11	NIC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	-21	-16	intron_retention	FALSE	canonical	3	42	junction_8	27.874002224295	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGGTAGAGCTTGGTTT	5235	False	NA	NA	False	NA	NA	NA	171108714	171104580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107830_171107961_171108097_171108247_171108343_171108446
47513	chr14	+	2245	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	285	2	40	-2	multi-exon	TRUE	canonical	3	271	junction_7	54.1807255433901	151	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCTTGTATTTCTTGTA	NA	False	NA	NA	False	NA	NA	NA	105496292	105546730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
47514	chr4	-	1992	13	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	25	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	152.63345708665	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGCTTCTTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	149251092	149234451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149235073_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244516_149244586_149245291_149245411_149246085_149246152_149249506_149249689_149250466_149250540_149251043
47515	chr16	+	1916	9	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	38	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	287.251631849151	1	84	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATACTTGAATATTATACA	NA	False	NA	NA	False	NA	NA	NA	38383285	38411690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406591_38406771_38408544_38408666_38411273
47517	chr10	-	1707	9	NIC	ENSMUSG00000019822.13	novel	1602	10	NA	NA	5	-2	intron_retention	FALSE	canonical	3	6	junction_3	58.5383154438185	17	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGCTCTACCTTGTTCC	NA	False	NA	NA	False	NA	NA	NA	41366360	41363169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41363579_41363667_41363822_41363988_41364306_41364424_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
47518	chr2	-	3242	17	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	-46	-10181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	52.4785670536077	5	90	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGACTGTCCCTCATAAC	NA	False	NA	NA	False	NA	NA	NA	59955982	59765246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798975_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59907213_59907256_59955806
47519	chr15	+	526	1	ISM	ENSMUSG00000047003.16	ENSMUST00000054555.10	8270	3	12607	11	7580	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAAAGTAAGGCTC	2391	False	NA	NA	False	NA	NA	NA	75501139	75501665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_75501100_75501700
47521	chr7	-	2619	18	NNC	ENSMUSG00000078813.4	novel	2222	4	NA	NA	4769	14578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGCCCGCCCGCCGCCTTT	3145	False	NA	NA	False	NA	NA	NA	3664070	3648518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3648583_3653798_3653873_3653977_3654046_3654264_3654342_3654492_3654581_3654804_3654935_3655030_3655128_3656198_3656419_3656507_3656643_3657140_3657196_3658566_3658952_3659031_3659153_3659781_3659983_3660997_3661098_3661189_3661389_3661605_3661739_3662377_3662503_3663723
47522	chr12	-	3309	22	FSM	ENSMUSG00000042050.9	ENSMUST00000039349.8	3721	22	15	397	15	-2	multi-exon	FALSE	canonical	3	13	junction_13	5.74791690552625	30	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAACAGTGAACATTTTA	NA	False	NA	NA	False	NA	NA	NA	116226627	116171067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_116171404_116175344_116175569_116176993_116177126_116177301_116177402_116180100_116180162_116181723_116181776_116182236_116182299_116182400_116182515_116188506_116188670_116189584_116189758_116193200_116193331_116195308_116195398_116196214_116196327_116196936_116197067_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450_116219872_116221040_116221095_116226470
47523	chr2	-	1794	8	NNC	ENSMUSG00000027496.16	novel	1862	9	NA	NA	1474	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	460.617509215529	1	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACGTGGGTAATCATTT	NA	False	NA	NA	False	NA	NA	NA	172210952	172198111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205707_172206361_172206417_172208841_172209092_172210905
47524	chr14	+	1361	1	NIC	ENSMUSG00000063787.5	novel	616	3	NA	NA	-3	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	42	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAAGAAGTTGGCCATT	NA	False	NA	NA	False	NA	NA	NA	20753122	20754483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20753100_20754500
47525	chr13	+	2332	13	FSM	ENSMUSG00000039242.11	ENSMUST00000221974.2	2439	13	78	29	29	0	multi-exon	FALSE	canonical	2	4	junction_12	57.9839537190151	4	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	NA	NA	NA	14129287	14173659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171638_14172963
47526	chr10	+	1683	2	FSM	ENSMUSG00000049422.8	ENSMUST00000219435.2	405	2	-1280	2	367	-2	multi-exon	FALSE	canonical	3	16591	junction_1	0	64	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTGCTGTGTGCCC	7313	False	NA	NA	False	NA	NA	NA	75771773	75773576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_75773289_75773408
47527	chr11	+	1099	6	FSM	ENSMUSG00000078656.12	ENSMUST00000107280.11	876	6	0	-223	0	1	multi-exon	FALSE	canonical	3	35	junction_2	474.329252734849	3420	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	NA	False	NA	NA	NA	101144560	101150372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101144634_101144856_101145003_101145744_101145823_101146834_101146924_101147703_101147780_101149735
47528	chr2	+	1944	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	141	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1002.05365158816	1	91	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGATAGTATGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	130116552	130121222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118100_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120452_130120816
47529	chrX	-	1776	10	NNC	ENSMUSG00000031387.15	novel	1310	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	803.20773568652	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACCCTGTTCCACATG	NA	False	NA	NA	False	NA	NA	NA	72974362	72965744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72970305_72971223_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72974013_72974124_72974319
47532	chr8	-	3691	12	Antisense	novelGene_ENSMUSG00000031756.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	168	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGCCGCTCGGGCCCCGC	5638	False	NA	NA	False	NA	NA	NA	117668053	117648463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_117648526_117649071_117649180_117652819_117652993_117655271_117655320_117655710_117657875_117658330_117658427_117660043_117660194_117661421_117661533_117662929_117662991_117663902_117664012_117667180_117667309_117667572
47533	chr10	+	1460	11	FSM	ENSMUSG00000044475.15	ENSMUST00000050516.14	1450	11	-14	4	-14	-4	multi-exon	FALSE	canonical	3	221	junction_7	12.5797456254091	1016	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGCTGTGCTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	59838646	59935804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
47534	chr13	+	3295	10	Antisense	novelGene_ENSMUSG00000021215.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAGCGAGCACGCACG	7861	False	NA	NA	False	NA	NA	NA	3932560	3943543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_3934470_3934795_3934989_3936048_3936219_3936537_3936803_3937374_3937448_3937570_3937670_3937979_3938040_3938353_3938524_3938873_3938978_3943291
47535	chr11	+	1734	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	47	145	-1	-145	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	5	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTGCAGAAACACTAG	NA	False	NA	NA	False	NA	NA	NA	4823997	4844055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
47536	chr10	+	1558	1	Antisense	novelGene_ENSMUSG00000020075.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTCCAGAGACTGAGGCA	NA	False	NA	NA	False	NA	NA	NA	62416132	62417690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62416100_62417700
47539	chr2	-	2148	14	NIC	ENSMUSG00000009566.13	novel	2273	15	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_6	103.126165046315	5	28	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTATTCTCCTAGCTCCC	NA	False	NA	NA	False	NA	NA	NA	32584150	32572620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
47540	chr2	-	1272	8	FSM	ENSMUSG00000026766.17	ENSMUST00000134480.8	803	8	0	-469	0	0	multi-exon	FALSE	canonical	3	69	junction_6	199.415574689068	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	NA	False	NA	NA	NA	50186699	50169892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182926_50186263_50186322_50186654
47543	chr8	+	1475	6	NNC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.822578481376	110	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAGTGCATTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	75820249	75827218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513_75826889_75826982
47550	chr6	-	3675	10	NIC	ENSMUSG00000004267.17	novel	2491	10	NA	NA	-2	-2	intron_retention	FALSE	canonical	0	0	junction_3	17.218279118497	4	111	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCACCCCTTGTCTGAGG	9987	False	NA	NA	False	NA	NA	NA	124746515	124737329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124738326_124738610_124738670_124739615_124740141_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200
47551	chr3	+	2280	2	NIC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	3	-2275	intron_retention	TRUE	canonical	3	107	junction_1	0	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCTAACGCAGGTGACAG	NA	False	NA	NA	False	NA	NA	NA	104688374	104691059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_104690038_104690442
47552	chr1	+	1566	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	159	8	60	-8	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	2	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGACCTTGGTTATTT	3718	False	NA	NA	False	NA	NA	NA	55092087	55111853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
47553	chr17	+	1692	9	NNC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	-14	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	111.331641391834	21	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTCTCTGGGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	12338201	12438514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434224_12435585_12435626_12437871
47554	chr2	+	982	8	ISM	ENSMUSG00000026718.18	ENSMUST00000028050.14	3981	13	-51	13247	30	-272	5prime_fragment	FALSE	canonical	3	216	junction_7	13.6993966796993	2	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTACTTTTCAGTCTGT	4722	False	NA	NA	False	NA	NA	NA	14078948	14135929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834
47556	chr11	-	2680	7	Antisense	novelGene_ENSMUSG00000038366.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	118	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCCTTGGGCGAGCTGG	NA	False	NA	NA	False	NA	NA	NA	97728902	97690570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_97690687_97697646_97697746_97706521_97706606_97715664_97715774_97724369_97724533_97724911_97725014_97726895
47557	chr8	+	2707	6	NNC	ENSMUSG00000044676.11	novel	4863	5	NA	NA	2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	9.338094023943	5	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATACTTCCAAATAAGTT	955	False	NA	NA	False	NA	NA	NA	110806397	110817641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_110806637_110809309_110809375_110810288_110810416_110810975_110811084_110815053_110815781_110816200
47559	chr19	+	1641	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-41	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2777.61444408687	8	79	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTACTGTTTGTCTTG	4134	False	NA	NA	False	NA	NA	NA	41900435	41907096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904319_41905081_41905215_41906053
47560	chr3	-	2082	10	NNC	ENSMUSG00000033439.13	novel	1616	11	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_8	46.8071958169565	11	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCTGAGTGTGAGGCTT	NA	False	NA	NA	False	NA	NA	NA	116388528	116374741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383942_116385841_116385909_116386116_116386160_116388287
47561	chr14	+	1328	4	ISM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	13	0	3	0	intron_retention	FALSE	canonical	3	716	junction_1	189.330985900941	311	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	192	False	NA	NA	False	NA	NA	NA	51162437	51164596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617
47562	chr17	-	3029	6	ISM	ENSMUSG00000024050.19	ENSMUST00000169488.10	3578	9	4212	-584	4212	-4	3prime_fragment	FALSE	canonical	3	73	junction_5	51.8096516104866	206	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATCCCAGGGCAAACAGC	NA	False	NA	NA	False	NA	NA	NA	32579225	32573038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_32574158_32575396_32575593_32575862_32576283_32576430_32576959_32577916_32578469_32579011
47563	chrX	-	1549	1	FSM	ENSMUSG00000047238.5	ENSMUST00000051484.5	1410	1	-139	0	-139	0	mono-exon	FALSE	NA	NA	NA	NA	NA	535	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTCATTTATTGTC	NA	False	NA	NA	False	NA	NA	NA	151820710	151819161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151819200_151820700
47565	chr2	+	2108	7	FSM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	11	-4	11	4	multi-exon	FALSE	canonical	3	14	junction_3	42.3910367884533	194	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCTCAAAGTGATTATA	1956	False	NA	NA	False	NA	NA	NA	122016763	122036882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_122016834_122016944_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
47566	chr8	-	2902	1	Antisense	novelGene_ENSMUSG00000031485.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTGCACGCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	27540849	27537947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_27537900_27540800
47567	chr11	+	1217	1	FSM	ENSMUSG00000088752.3	ENSMUST00000158127.3	83	1	-694	-440	-694	440	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGTTGAACCATGTCCTA	NA	False	NA	NA	False	NA	NA	NA	69553174	69554391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69553200_69554400
47568	chr5	-	1386	6	NIC	ENSMUSG00000035325.17	novel	4047	26	NA	NA	-190	-1	combination_of_known_splicesites	FALSE	canonical	3	466	junction_5	127.023462399669	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATACAGTTAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	100521533	100509513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238
47570	chr15	+	2456	9	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	-3	2	intron_retention	FALSE	canonical	3	245	junction_2	20.9030500166842	400	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGGATCCTGGCCCGCT	4823	False	NA	NA	False	NA	NA	NA	76215540	76219100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216832_76216909_76217012_76217102_76217574_76217663_76218091_76218213_76218405_76218489_76218661_76218781
47571	chr18	+	2266	10	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	789.149065078063	1	91	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTTTCTGTAAGGAAGTG	472	False	NA	NA	False	NA	NA	NA	61688388	61721364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710319_61711737_61711845_61713409_61713523_61720496
47572	chr5	-	1912	6	NNC	ENSMUSG00000028945.10	novel	522	6	NA	NA	4281	414	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	644.320230941106	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGCCTTTGAGCTACTT	NA	False	NA	NA	False	NA	NA	NA	25014676	25008250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25014285_25014389
47573	chr16	-	1277	12	NIC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	2	35	junction_8	593.762439626105	2997	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAAGTGAATATACAATT	NA	False	NA	NA	False	NA	NA	NA	22946472	22932699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22940979_22941051_22943285_22943365_22946149_22946292_22946434
47574	chr17	-	2329	14	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	49	-643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	446.248318910198	1	116	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAGTTTTAAAAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	7050134	7006082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006201_7006266_7006867_7007028_7007266_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014678_7014760_7020381_7020523_7021380_7021456_7022009_7022285_7023277_7023343_7026877_7026962_7050030
47575	chr8	+	2202	10	FSM	ENSMUSG00000015016.9	ENSMUST00000015160.6	2206	10	0	4	0	-4	multi-exon	FALSE	canonical	2	11	junction_1	8.97458689169274	123	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACTGTGACCTGTGAGC	9534	False	NA	NA	False	NA	NA	NA	123502243	123544615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123502330_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
47576	chr11	+	1766	11	NNC	ENSMUSG00000034285.16	novel	1566	11	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	511.362933736891	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTTGTGGTGTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	4823987	4844199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833494_4833723_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119_4843834_4843955
47577	chr8	+	3597	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	-6	4	-6	-3	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	3	153	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGAATCTCTGGAAATGTC	NA	False	NA	NA	False	NA	NA	NA	79235990	79460628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
47578	chr14	-	3137	16	NNC	ENSMUSG00000037712.18	novel	3293	15	NA	NA	71	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	96.4551709344813	4	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTTTTATTTAATGTT	NA	False	NA	NA	False	NA	NA	NA	45767504	45696267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45697176_45697244_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
47581	chr10	-	4515	18	ISM	ENSMUSG00000019979.13	ENSMUST00000159110.8	6433	27	24232	0	23999	0	3prime_fragment	TRUE	canonical	3	61	junction_15	12.9942760888271	50	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTTTCGGGATCCTTT	NA	False	NA	NA	False	NA	NA	NA	90894292	90825172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_90827459_90831509_90831657_90833073_90833200_90835513_90835640_90836871_90836992_90844985_90845112_90849921_90850039_90854827_90854948_90856517_90856644_90859581_90859711_90867410_90867573_90872771_90872898_90875646_90875779_90883947_90884074_90885219_90885347_90890241_90890427_90891776_90891891_90894172
47582	chr17	+	1717	9	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	-2	-14	combination_of_known_junctions	FALSE	canonical	2	10	junction_7	132.771361275691	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGAGACCATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	15720187	15737675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15720287_15721415_15721465_15721573_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15735877_15735973_15736965
47583	chr1	+	2159	2	Antisense	novelGene_ENSMUSG00000026034.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	46	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAACTTAATGAGGAAAAA	5948	False	NA	NA	False	NA	NA	NA	58455477	58459919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_58456542_58458824
47585	chr8	+	2863	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	53	0	-8	0	multi-exon	FALSE	canonical	3	239	junction_9	14.7126551724093	1	114	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	105951829	105979685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
47586	chr7	-	4088	3	ISM	ENSMUSG00000044702.14	ENSMUST00000130149.3	3216	4	39	2075	8	-2075	intron_retention	FALSE	canonical	3	129	junction_1	7.5	2	202	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTAAAATCTCCCAGTA	NA	False	NA	NA	False	NA	NA	NA	121732103	121726879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_121727667_121728145_121728240_121728896
47587	chr2	+	2081	9	NIC	ENSMUSG00000064289.16	novel	2227	9	NA	NA	11	17	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	19.9874960913067	145	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAAGTGTTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	61423519	61484451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_61423553_61424340_61424546_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
47588	chrX	-	2569	11	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	13	379	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	96.7597023558878	1	91	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGGTACCCAAAGCTAAG	NA	False	NA	NA	False	NA	NA	NA	104972935	104919734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104954179_104954250_104955075_104955261_104972705
47589	chr17	-	2201	2	FSM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	-46	-6	-46	6	multi-exon	TRUE	canonical	3	72	junction_1	0	223	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGACTTGGGTTTTTTTG	6203	False	NA	NA	False	NA	NA	NA	27461679	27454042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27456112_27461547
47590	chr8	+	4051	4	NNC	ENSMUSG00000056608.15	novel	9213	37	NA	NA	50397	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.1928941054479	2	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGATGTCAGCCTCCCT	9408	False	NA	NA	False	NA	NA	NA	91768587	91781137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_91768908_91769379_91769599_91775733_91775839_91777730
47591	chrX	-	1638	6	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	intron_retention	FALSE	canonical	3	11043	junction_5	2046.70920259816	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
47592	chr8	-	3319	5	NNC	ENSMUSG00000055707.14	novel	2991	3	NA	NA	-5	-10	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	22.9932055181525	2	89	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGAGGAAGGATGGAGCA	NA	False	NA	NA	False	NA	NA	NA	70929560	70902927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70905670_70908115_70908299_70928456_70928587_70929019_70929223_70929499
47594	chr4	+	660	2	ISM	ENSMUSG00000028689.15	ENSMUST00000156206.2	431	3	959	1	959	-1	3prime_fragment	FALSE	canonical	3	73	junction_1	0	28	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATGTGTTCTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	116570945	116572295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116571347_116572036
47595	chr19	+	632	5	Antisense	novelGene_ENSMUSG00000025204.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	664	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCACCTTCTCCGCGGTT	NA	False	NA	NA	False	NA	NA	NA	44538689	44543839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_44538851_44541135_44541295_44542108_44542206_44543367_44543497_44543753
47598	chr2	+	3600	19	NNC	ENSMUSG00000027478.16	novel	4015	21	NA	NA	-4381	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	35.8780943518603	4	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTATAACGTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	153503340	153529639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153503523_153504062_153504125_153504633_153504754_153507826_153508022_153509423_153509583_153511667_153511776_153512222_153512368_153512768_153512829_153514135_153514261_153514415_153514461_153515906_153515987_153516268_153516382_153516777_153516965_153517648_153517734_153518615_153518762_153519090_153519182_153519430_153519580_153520390_153520477_153528177
47600	chr6	+	3624	2	FSM	ENSMUSG00000038871.6	ENSMUST00000135743.2	1861	2	-41	-1722	-41	1722	multi-exon	FALSE	canonical	3	97	junction_1	0	10	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAATCTTTATGTCCAGA	NA	False	NA	NA	False	NA	NA	NA	34453249	34467740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34453358_34464224
47601	chr12	+	1732	15	NNC	ENSMUSG00000021076.7	novel	4022	13	NA	NA	-8	993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	121.235161094933	628	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGCTCTTGTGCTTTCT	9695	False	NA	NA	False	NA	NA	NA	70984680	71009828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640_71008874_71009227_71009570_71009791
47602	chr15	-	1733	10	ISM	ENSMUSG00000042632.18	ENSMUST00000166977.9	3365	16	21865	0	-596	0	3prime_fragment	FALSE	canonical	3	30	junction_8	59.2604629507381	2	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	79190511	79170427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483
47603	chr5	+	2024	2	ISM	ENSMUSG00000066613.15	ENSMUST00000112536.8	2509	3	-1147	2947	-1147	-10	5prime_fragment	FALSE	canonical	3	245	junction_1	0	48	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACGTACATCAAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	110153114	110155323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_110154937_110155121
47606	chr8	-	2635	3	ISM	ENSMUSG00000031508.15	ENSMUST00000209915.2	666	5	-43	7053	-37	1357	5prime_fragment	FALSE	canonical	3	43	junction_2	199	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGACTTTTTCCCCCAAA	NA	False	NA	NA	False	NA	NA	NA	11685073	11676311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_11678531_11682865_11683019_11684810
47609	chr2	-	1338	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	769	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	NA	False	NA	NA	NA	84307107	84263198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
47610	chr12	+	1396	1	FSM	ENSMUSG00000091905.4	ENSMUST00000167639.4	691	1	-16	-689	-16	689	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGTGGGGTCTGCAAAA	NA	False	NA	NA	False	NA	NA	NA	64833068	64834464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_64833100_64834500
47611	chr5	-	1318	6	Antisense	novelGene_ENSMUSG00000005514.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGGAACGGATGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	135764180	135762386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_135762544_135762630_135762775_135762878_135763150_135763234_135763381_135763472_135763555_135763662
47612	chr10	-	2793	9	NNC	ENSMUSG00000009647.14	novel	2872	8	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	38.7941280994946	91	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGCATCTCGTTCTTTA	5647	False	NA	NA	False	NA	NA	NA	59452497	59282805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_59284681_59287027_59287145_59290767_59290972_59292470_59292632_59302275_59302381_59303447_59303619_59326908_59326979_59452345_59452396_59452457
47613	chr3	-	1702	1	NIC	ENSMUSG00000027534.17	novel	2512	7	NA	NA	20239	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGGTGAGTTTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	10484908	10483206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10483200_10484900
47615	chr6	-	2537	10	NNC	ENSMUSG00000029672.17	novel	2826	10	NA	NA	8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	174.811644666799	9	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACGTGTAGTAGTTGCAG	32	True	NA	NA	False	NA	NA	NA	22356089	22306522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_22306894_22307048_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22355993
47616	chr15	-	4648	16	NNC	ENSMUSG00000022246.15	novel	4732	17	NA	NA	-1039	-13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_15	55.5835307342822	2	169	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCCCTTTTATGGATTT	7801	False	NA	NA	False	NA	NA	NA	10715749	10569067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10715628
47617	chr6	-	2187	3	ISM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	-11	52	-6	2	intron_retention	FALSE	canonical	3	36	junction_1	21	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAGAATTGATTTACT	NA	False	NA	NA	False	NA	NA	NA	134874832	134846122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_134847446_134864592_134864749_134874124
47618	chr8	+	2149	9	NNC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_2	448.323543883209	2	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	712	False	NA	NA	False	NA	NA	NA	70755427	70765640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70755583_70757283_70757347_70757938_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
47619	chr7	-	2053	3	NIC	ENSMUSG00000033916.6	novel	888	5	NA	NA	-5	0	intron_retention	FALSE	canonical	3	2610	junction_2	187.5	5	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6998	False	NA	NA	False	NA	NA	NA	12768671	12765940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_12766130_12766215_12767970_12768561
47620	chrX	+	1165	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	71	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5605.09585605416	4	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059377	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060983_36061386_36061530_36062039
47621	chr17	-	2247	5	Antisense	novelGene_ENSMUSG00000023892.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	53	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCAGGTCTGGGTGATC	NA	False	NA	NA	False	NA	NA	NA	21685848	21672726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21672788_21676556_21676650_21681922_21682049_21683632_21685107_21685355
47623	chr6	+	2823	2	ISM	ENSMUSG00000041390.19	ENSMUST00000101663.10	3431	5	49553	4	42415	-4	3prime_fragment	FALSE	canonical	3	144	junction_1	0	92	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGACTGTGCTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	15770212	15802160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_15770492_15799616
47624	chr6	+	1390	5	NIC	ENSMUSG00000029910.15	novel	1725	5	NA	NA	0	291	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	408.756880676032	11	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAAAATACCATGTCTG	NA	False	NA	NA	False	NA	NA	NA	66512451	66518295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66517409
47627	chr12	-	5095	29	NIC	ENSMUSG00000041341.11	novel	7546	42	NA	NA	-11228	-1	combination_of_known_junctions	FALSE	canonical	3	57	junction_22	8.77641784580028	50	23	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGATTGTTGTATACGTC	NA	False	NA	NA	False	NA	NA	NA	105624316	105582398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_105583563_105587465_105587616_105588361_105588517_105588965_105589088_105589679_105589763_105590173_105590244_105592436_105592642_105592986_105593066_105601178_105601281_105601943_105602139_105602705_105602815_105604169_105604397_105605460_105605664_105607410_105607553_105609448_105609620_105610051_105610129_105610551_105610623_105611090_105611184_105611630_105611738_105612782_105612864_105613011_105613212_105614571_105614723_105615247_105615421_105615733_105615892_105617639_105617783_105618317_105618514_105618787_105618891_105620267_105620542_105624225
47628	chr10	+	1368	15	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	666	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	654.335186058556	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCATGGGATGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	111317143	111332738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111317178_111321338_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
47629	chr3	-	1675	2	Genic_Genomic	ENSMUSG00000069008.4	novel	1252	1	NA	NA	-49	436	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTCTCACCTAAGGAA	NA	False	NA	NA	False	NA	NA	NA	58011717	58009980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_58011593_58011654
47630	chr5	+	2694	1	Antisense	novelGene_ENSMUSG00000044221.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	544	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAAAATCAAACTGTGC	NA	False	NA	NA	False	NA	NA	NA	88806246	88808940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_88806200_88808900
47631	chr8	+	1857	6	FSM	ENSMUSG00000031532.8	ENSMUST00000033933.8	1860	6	0	3	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	399	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTATTCTTGTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	34621729	34637972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
47632	chr7	+	3091	2	FSM	ENSMUSG00000045252.12	ENSMUST00000179556.2	4140	2	38	1011	38	1	multi-exon	FALSE	canonical	3	224	junction_1	0	158	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTGTCAGGCCTAGC	4993	False	NA	NA	False	NA	NA	NA	24776667	24781906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24776812_24778959
47634	chr8	-	2348	8	NIC	ENSMUSG00000031816.16	novel	1060	10	NA	NA	-5	-7	intron_retention	FALSE	canonical	3	48	junction_5	13.1413042560859	91	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTAAGCTGCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	121835123	121824302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
47635	chr6	-	1883	12	NIC	ENSMUSG00000030083.12	novel	1774	12	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	1	8	junction_6	151.211744701056	1	27	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGGGGACCTGAGCCTG	7020	False	NA	NA	False	NA	NA	NA	88818826	88812905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816027_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
47636	chr6	+	3644	18	FSM	ENSMUSG00000015189.13	ENSMUST00000015333.12	3961	18	306	11	-1	-11	multi-exon	TRUE	canonical	3	22	junction_3	9.97574914150592	40	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAATCAAGCCATGTGT	0	True	NA	NA	False	NA	NA	NA	4601144	4643344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_4601302_4607982_4608080_4608633_4608755_4613234_4613280_4614648_4614712_4619288_4619334_4619760_4619885_4621071_4621287_4624051_4624475_4625465_4625556_4629961_4630082_4631007_4631165_4631518_4631599_4634001_4634104_4635745_4635887_4636968_4637047_4640914_4641008_4641851
47637	chr7	-	4050	25	FSM	ENSMUSG00000038260.11	ENSMUST00000042194.10	4234	25	-24	208	-13	-5	multi-exon	FALSE	canonical	3	102	junction_19	18.3832181168949	113	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGATTTTCGCACATGCT	3177	False	NA	NA	False	NA	NA	NA	44983217	44952786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954712_44954919_44957667_44957846_44957967_44958143_44958521_44958655_44959700_44960124_44964018_44964097_44964404_44964518_44966198_44966345_44966429_44966560_44967459_44967595_44967762_44968105_44968665_44968779_44971211_44971312_44971422_44971615_44971744_44971807_44975986_44976171_44976400_44976565_44976695_44976877_44977144_44977320_44982805_44982877_44983110
47638	chrX_GL456233v2_random	-	2498	8	Intergenic	novelGene_4785	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_7	117.818088767457	1049	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGTTTCTTCTTTAATAA	NA	False	NA	NA	False	NA	NA	NA	134113	105705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_GL456233v2_random_-_107510_109039_109133_116592_116661_119836_119928_123935_124074_125547_125606_127389_127507_133984
47639	chr4	+	1844	9	FSM	ENSMUSG00000028710.19	ENSMUST00000239030.2	2160	9	37	279	37	164	multi-exon	FALSE	canonical	3	354	junction_5	26.518566609076	274	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTCTGTTACACAGCATA	NA	False	NA	NA	False	NA	NA	NA	115642217	115669232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514_115657623_115668198
47640	chr10	+	2428	15	Genic_Genomic	ENSMUSG00000097129.3	novel	1834	1	NA	NA	-20145	-1620	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	82	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGCCGGGGAAAATCCGG	NA	False	NA	NA	False	NA	NA	NA	62265122	62285481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_62265610_62266245_62266394_62268068_62268244_62268829_62268911_62270172_62270393_62271236_62271335_62271427_62271604_62273210_62273307_62274754_62274831_62276913_62277025_62279172_62279341_62280815_62280935_62282804_62282913_62283475_62283553_62285193
47643	chr4	-	1204	10	NNC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_6	303.134000439116	1869	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTACTGTTGCCTCC	NA	False	NA	NA	False	NA	NA	NA	123033738	123020916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030633_123030692_123031318_123031363_123032658_123032758_123033694
47644	chr3	-	1364	5	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	55	-5	intron_retention	FALSE	canonical	3	6820	junction_1	1471.06398569199	33	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049954	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86045418_86045789_86046556_86048545_86048734_86049004_86049109_86049814
47645	chr14	+	1879	9	ISM	ENSMUSG00000021893.15	ENSMUST00000143472.8	4613	21	26916	8	-1965	-6	3prime_fragment	FALSE	canonical	3	220	junction_1	27.8691137282835	78	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAACTATGTAGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	31085547	31093935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
47647	chr6	+	1665	6	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	-2	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	955.429871837803	1	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTATATTCCTTTATGTG	NA	False	NA	NA	False	NA	NA	NA	51447640	51460668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452354_51455494_51455581_51458703_51458799_51459459
47648	chr9	-	617	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	9979	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGAGGCTGACGAGAAGC	9623	False	NA	NA	False	NA	NA	NA	57439710	57428590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57428698_57436237_57436354_57437521_57437644_57438949_57439075_57439563
47649	chr11	-	1789	5	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1395.71943813934	1	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120472426	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120470257_120470341_120470406_120470493_120470571_120470972_120471220_120472347
47650	chr19	-	2011	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179768.8	962	3	-56	-993	3	-20	multi-exon	FALSE	canonical	3	207	junction_2	1.5	1089	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAAGCTGTGGTTTTGCA	456	False	NA	NA	False	NA	NA	NA	21630337	21574695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_21576233_21596472_21596580_21629970
47651	chr15	+	2670	6	NIC	ENSMUSG00000097039.9	novel	1342	7	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	8.29457654133109	12	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAAGCGTGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	61909854	62122824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_61910051_61978996_61979315_62047315_62047398_62114022_62114151_62114282_62114411_62121006
47652	chr12	-	2593	6	FSM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	-73	6	-73	-6	multi-exon	FALSE	canonical	3	77	junction_1	6.95701085237043	121	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACAGTTTGATAAAGGAT	7596	False	NA	NA	False	NA	NA	NA	87346552	87325417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799_87332161_87333668_87333912_87346347
47653	chr7	-	1535	11	NIC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	96.582658898997	568	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	NA	False	NA	NA	NA	126817622	126813618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817496
47656	chr17	-	1798	13	NIC	ENSMUSG00000001524.15	novel	1679	14	NA	NA	-9	-1	intron_retention	FALSE	canonical	3	142	junction_7	16.8792690073422	254	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAAAAAATCTACGCGGC	NA	False	NA	NA	False	NA	NA	NA	35984604	35978633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
47657	chr16	-	1373	10	NNC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	161.727785315974	29	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	4831423	4826593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4827117_4827341_4827469_4827877_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
47658	chr4	-	3018	2	ISM	ENSMUSG00000028540.7	ENSMUST00000139332.2	2558	4	18	0	-16	0	intron_retention	FALSE	canonical	3	66	junction_1	0	8	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	NA	False	NA	NA	NA	117749199	117746103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_117746874_117746951
47660	chr7	+	3058	3	FSM	ENSMUSG00000030559.9	ENSMUST00000107256.4	1577	3	5	-1486	5	1486	multi-exon	FALSE	canonical	3	30	junction_1	4.5	204	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCCAAATGTGACAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	88079485	88142266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_88079812_88099688_88099970_88139815
47661	chr14	+	1715	14	NIC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_8	42.8658289309892	224	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	52122386	52129325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126855_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
47662	chr3	-	2061	9	NNC	ENSMUSG00000033439.13	novel	1723	11	NA	NA	5	-6	intron_retention	FALSE	canonical	0	0	junction_5	52.5415014536128	3	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGGATCAATCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	116388504	116374749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382144_116383139_116383247_116383382_116383942_116385841_116385909_116388287
47663	chr13	+	2324	4	Antisense	novelGene_ENSMUSG00000097565.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGCCAGACTACAATTC	NA	False	NA	NA	False	NA	NA	NA	67638289	67648650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_67640272_67642127_67642220_67642719_67642848_67648528
47664	chr19	+	948	7	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	-1	-314	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3312.668180217	2	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACTGAACATTGAACTT	2017	False	NA	NA	False	NA	NA	NA	8945578	8955529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950353_8955307
47665	chr14	-	2112	3	FSM	ENSMUSG00000021848.17	ENSMUST00000122009.8	1737	3	119	-494	119	0	multi-exon	FALSE	canonical	3	33	junction_2	5.5	171	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTCTAGTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	48900210	48895133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_48896784_48898755_48898908_48899900
47666	chr19	+	3016	8	ISM	ENSMUSG00000037847.15	ENSMUST00000159572.9	1768	10	-54	4793	-6	-4526	intron_retention	FALSE	canonical	3	69	junction_2	9.77919490864276	9	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCATTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	18609307	18624765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418
47667	chr14	+	1539	8	ISM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	3016	0	-255	0	3prime_fragment	FALSE	canonical	3	1233	junction_7	72.2252711723422	9	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	74972839	74987288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
47669	chr10	-	1829	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	-4	581	-3	-579	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	1	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGGCTTGCACGTCACT	8244	False	NA	NA	False	NA	NA	NA	128540903	128534393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
47671	chr6	+	2012	5	NNC	ENSMUSG00000046733.8	novel	2083	4	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	55.646203823801	3	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	135042662	135061707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_135042774_135055543_135056125_135056181_135056483_135060440_135060497_135060744
47673	chr6	+	2262	10	FSM	ENSMUSG00000029823.17	ENSMUST00000057692.11	2702	10	393	47	15	-4	multi-exon	FALSE	canonical	3	38	junction_9	33.3603594142346	139	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACTGAAACAGCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	38528792	38586358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_38528844_38547444_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211_38580404_38585087
47674	chr9	+	2442	9	NNC	ENSMUSG00000031939.17	novel	3126	10	NA	NA	542	0	intron_retention	FALSE	canonical	0	0	junction_7	214.912627595495	1	109	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9729	False	NA	NA	False	NA	NA	NA	15218166	15228266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225370_15226678_15226737_15228184
47675	chr7	+	1267	10	NNC	ENSMUSG00000030763.8	novel	1369	11	NA	NA	6	3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	92.0315297554909	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTACATCTGTACAATG	6830	False	NA	NA	False	NA	NA	NA	122977210	123029575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003721_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
47677	chr19	+	882	3	Intergenic	novelGene_1269	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAGTCTACA	NA	False	NA	NA	False	NA	NA	NA	41513762	41515401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41513770_41514259_41514468_41514734
47678	chr14	-	1884	5	Antisense	novelGene_ENSMUSG00000092784.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	29.0118510267787	4	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATGGCGCAGGCGTATTT	NA	False	NA	NA	False	NA	NA	NA	58040899	58035616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_58035810_58035942_58036052_58038947_58039073_58039377_58040729_58040793
47679	chr8	-	2343	2	NIC	ENSMUSG00000031489.16	novel	1864	3	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	128	junction_1	0	464	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTGTCCCCTGCTCG	NA	False	NA	NA	False	NA	NA	NA	27718613	27715807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27716822_27717284
47680	chr2	+	1011	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	45	-3	intron_retention	FALSE	canonical	3	2580	junction_5	1583.14577976888	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAATGGGCTTGGCTGCTT	5867	False	NA	NA	False	NA	NA	NA	32851796	32854052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32851852_32852060_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
47681	chr5	-	1281	12	NNC	ENSMUSG00000005378.18	novel	1516	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	398.330109372939	2	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	False	NA	NA	False	NA	NA	NA	135092941	135081810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135082232_135082395_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092701_135092776_135092867
47682	chr14	+	2764	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	11504	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	36.2427536216917	134	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGTGTCTTCTCTTTG	NA	False	NA	NA	False	NA	NA	NA	121503823	121521156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121503920_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
47683	chr18	+	3144	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	-7	2	intron_retention	FALSE	canonical	3	414	junction_3	24.7434839907399	21	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	67774661	67787234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_67774806_67777378_67777551_67779062_67781317_67781842_67782017_67786222_67786344_67786955
47684	chr3	-	2353	8	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	3	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	184.879000694939	63	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGATCCTGGAGTCCGGT	1241	False	NA	NA	False	NA	NA	NA	95041319	95037035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95037195_95037474_95037972_95038180_95039071_95039836_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
47685	chr17	-	842	5	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	3	-50	intron_retention	FALSE	canonical	3	300	junction_4	285.772090134779	35	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTCCTGTTTTAATGCC	9291	False	NA	NA	False	NA	NA	NA	27158504	27157018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27157151_27157391_27157761_27157857_27158067_27158290_27158343_27158424
47686	chr18	-	1968	3	ISM	ENSMUSG00000024527.11	ENSMUST00000025408.10	3094	17	38753	0	25529	0	3prime_fragment	FALSE	canonical	3	752	junction_1	12	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGGGTTGCCATGTTGTG	9242	False	NA	NA	False	NA	NA	NA	67543489	67537833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_67538585_67540335_67540531_67542467
47687	chr2	-	1794	10	NNC	ENSMUSG00000026767.13	novel	1984	12	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	65.9479780013697	7	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	NA	False	NA	NA	NA	12424248	12352073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_12352990_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12410670_12410732_12414811_12414892_12423969
47689	chr7	+	2271	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107471.8	2216	11	-59	4	-44	-1	multi-exon	FALSE	canonical	3	46	junction_1	12.2429571591181	137	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCAGCAGTTTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	67297113	67376320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
47690	chr5	+	195	1	Intergenic	novelGene_689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATAGTTTATGCTCTTT	6961	False	NA	NA	False	NA	NA	NA	32845062	32845257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_32845100_32845300
47692	chr3	+	1845	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	276	90	0	0	multi-exon	FALSE	canonical	3	56	junction_1	65.8012580089131	521	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	NA	False	NA	NA	NA	32564683	32574892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
47693	chr9	-	3213	5	NIC	ENSMUSG00000074269.11	novel	883	6	NA	NA	-25	0	intron_retention	FALSE	canonical	0	0	junction_2	265.629794074385	21	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTTTTATCAATGTTTT	9025	False	NA	NA	False	NA	NA	NA	58648867	58560163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_58560390_58565039_58567655_58573115_58573200_58619298_58619389_58648669
47695	chr7	-	2142	8	NIC	ENSMUSG00000038650.16	novel	2091	10	NA	NA	-24	4	intron_retention	FALSE	canonical	3	441	junction_7	124.543411003914	12	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCCTTGTCGTTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	140748626	140740234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140744092_140744416_140744588_140746595_140746701_140748588
47696	chr19	-	4746	2	ISM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	47	-2	29	2	intron_retention	FALSE	canonical	3	5910	junction_1	0	15	144	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGGTTGTCTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	47079035	47071904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_47072009_47074393
47697	chr5	+	1994	1	NIC	ENSMUSG00000023707.14	novel	1596	7	NA	NA	182	2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCTCTGTTTGCTATTA	NA	False	NA	NA	False	NA	NA	NA	124251547	124253541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_124251500_124253500
47698	chr11	-	2673	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	154.822558728882	1	122	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCATGAGCTGTGTTCCGT	7771	False	NA	NA	False	NA	NA	NA	113456580	113135684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260727_113354782_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
47699	chr11	+	2375	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	-5	-1177	-2	-17	multi-exon	FALSE	canonical	3	177	junction_1	179.5	962	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAATTGAAACTCAATTA	NA	False	NA	NA	False	NA	NA	NA	46327773	46333531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_46327837_46330632_46330803_46331389
47700	chr1	-	1511	13	NNC	ENSMUSG00000013593.13	novel	1623	13	NA	NA	38	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	530.971802975973	1	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCTTTTGGCCCCTAAG	NA	False	NA	NA	False	NA	NA	NA	171074653	171062445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066910_171068515_171068707_171073655_171073767_171074562
47701	chr7	+	3830	18	NNC	ENSMUSG00000030852.19	novel	2934	13	NA	NA	5099	7	intron_retention	FALSE	non_canonical	0	0	junction_1	137.077857804775	1	243	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGAATGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	130203146	130366446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130203458_130203566_130203668_130264745_130264872_130276331_130276461_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342693_130343872_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361052_130361263_130361371_130361644_130361766_130365983
47702	chr8	-	2423	5	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	-9444	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	47.5887329102173	46	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTGTCCCCTGCTCG	NA	False	NA	NA	False	NA	NA	NA	27730296	27715807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_27716411_27716753_27716822_27717284_27718779_27719136_27719313_27730214
47703	chr11	-	1717	2	ISM	ENSMUSG00000005198.16	ENSMUST00000071213.4	5799	28	22427	-413	1552	0	3prime_fragment	FALSE	canonical	3	442	junction_1	0	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	4716	False	NA	NA	False	NA	NA	NA	69626622	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69626393_69626475
47704	chr9	+	1253	8	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	16	3	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	233.748163803767	41	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTAAGTGCTTAGCCCAA	9088	False	NA	NA	False	NA	NA	NA	15217525	15223403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
47706	chr10	+	1248	7	Genic_Genomic	ENSMUSG00000085572.2	novel	815	6	NA	NA	-8887	37180	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATACTTCCGCTTCCGC	8012	False	NA	NA	False	NA	NA	NA	14531076	14581242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_14531589_14543674_14543855_14551678_14551787_14559807_14559884_14560624_14560753_14563357_14563451_14581091
47707	chr5	-	1414	3	ISM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	14644	5	14568	-5	3prime_fragment	FALSE	canonical	3	1397	junction_2	5	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCATGTGTCTGTGGCGC	9082	False	NA	NA	False	NA	NA	NA	114814401	114807463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_114808651_114812114_114812266_114814325
47708	chr5	+	1838	6	Antisense	novelGene_ENSMUSG00000065514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAAGATGCCAGTGACGC	1312	False	NA	NA	False	NA	NA	NA	138163498	138166630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_138164343_138164946_138165027_138165305_138165700_138165810_138165896_138166101_138166252_138166345
47709	chr6	+	4481	1	ISM	ENSMUSG00000005225.16	ENSMUST00000119706.8	6739	14	46233	15	38197	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	84	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTCAAAGGGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	54618328	54622809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_54618300_54622800
47710	chr10	-	2772	14	Antisense	novelGene_ENSMUSG00000037455.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	20	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCACCAGGCCAGGGCT	NA	False	NA	NA	False	NA	NA	NA	23703863	23667672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_23667807_23674643_23674782_23679653_23679752_23680085_23680157_23681790_23681938_23686685_23686843_23692189_23692326_23694955_23695058_23696708_23696802_23698818_23698916_23700581_23700658_23701843_23701939_23702040_23702092_23702486
47711	chr2	+	3216	9	NNC	ENSMUSG00000026893.5	novel	3330	8	NA	NA	62	-131	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	120.577192598766	20	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGAAATGTGCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	62494690	62524322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_62494804_62502620_62502795_62509499_62509570_62516031_62516111_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
47712	chr10	-	1855	4	NNC	ENSMUSG00000075000.12	novel	1813	4	NA	NA	31	-7	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	73.1619208787376	246	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATACCTTTGTTGAGTA	NA	False	NA	NA	False	NA	NA	NA	67121053	67102474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_67103946_67105804_67105926_67111348_67111434_67120875
47713	chr5	-	1579	6	NNC	ENSMUSG00000025856.16	novel	2060	6	NA	NA	518	130	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	158.480787479114	8	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTATTTCTGATGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	138979518	138962140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138979298
47714	chr10	-	3926	16	NNC	ENSMUSG00000020092.10	novel	4282	20	NA	NA	-8711	-73	intron_retention	FALSE	non_canonical	0	0	junction_1	151.872402584099	1	203	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTCTGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	61186817	61155507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61157022_61159006_61159159_61174977_61175119_61176727_61176782_61176990_61177132_61178097_61178281_61178572_61178729_61178819_61178937_61179406_61179979_61182539_61182635_61182812_61182917_61183201_61183354_61184086_61184163_61184312_61184474_61185919_61186085_61186674
47715	chr5	+	865	7	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6114.48852226324	10	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121343466	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343919_121344729_121344771_121344831_121344874_121345209_121345259_121346453_121346639_121346844
47716	chr11	-	1561	7	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	3	4	junction_6	99.5601437434791	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCGGTGGTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	77775381	77771441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_77772081_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77775238
47717	chr13	-	556	5	ISM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	-1	41427	-1	5414	5prime_fragment	FALSE	canonical	3	14	junction_1	62.6592969957372	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCTGTATGCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	55248114	55217534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_55217621_55225215_55225341_55233422_55233508_55240939_55241095_55248009
47718	chr12	-	2784	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	8	354	intron_retention	FALSE	canonical	3	66	junction_1	21.2759645296439	199	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTGGACTTTGGACGC	NA	False	NA	NA	False	NA	NA	NA	73333475	73326430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_73328431_73329385_73329511_73331408_73332050_73333457
47719	chr15	+	3517	3	FSM	ENSMUSG00000047003.16	ENSMUST00000161785.8	3540	3	18	5	13	-5	multi-exon	FALSE	canonical	3	54	junction_1	0	77	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGCTTCCTGTGCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	75488545	75497144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_75488670_75489892_75491541_75495399
47720	chr17	+	1693	9	NNC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	-14	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	87.4167461073678	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTCTGTGGCAAGTG	NA	False	NA	NA	False	NA	NA	NA	12338201	12438523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429190_12429637_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
47721	chr2	-	2964	8	Antisense	novelGene_ENSMUSG00000064289.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	17	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGACTGCAACCGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	61482223	61423498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_61423553_61424340_61424546_61443994_61444141_61457247_61457357_61458062_61458181_61474055_61474128_61474648_61474764_61480078
47722	chr16	+	1405	13	NNC	ENSMUSG00000005262.14	novel	2078	13	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	131.578240348978	46	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTCTAGTTTGATATGGT	NA	False	NA	NA	False	NA	NA	NA	18631075	18654004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985_18653148_18653699
47723	chr1	-	2218	20	Antisense	novelGene_ENSMUSG00000062590.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	86	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCAATCTTGCTGGGCG	NA	False	NA	NA	False	NA	NA	NA	86180206	86082470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86082564_86084637_86084726_86087714_86087843_86090383_86090557_86092416_86092569_86097626_86097730_86101264_86101436_86104534_86104634_86113825_86113862_86116598_86116709_86118729_86118822_86121995_86122087_86124037_86124160_86125958_86126102_86127557_86127635_86130209_86130286_86135673_86135765_86140770_86140826_86172285_86172393_86179995
47724	chr7	+	1423	13	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	39	-250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	566.440910912652	1	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTCTTGCATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	120234524	120258497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250417_120250608_120253203_120253285_120255323_120255401_120256761_120256894_120258243
47725	chr3	-	2040	7	FSM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	45	14	45	-14	multi-exon	FALSE	canonical	3	312	junction_5	35.6401770789964	255	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATGCTGCCTACAAGGT	2344	False	NA	NA	False	NA	NA	NA	87792870	87766223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889_87777457_87779516_87779565_87792181
47726	chr10	-	1162	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1846.12495431343	3	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTCTATGAGTTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	90959825	90952654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955437_90957779_90957906_90959426_90959569_90959777
47727	chr4	+	2334	8	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.576895658967	2	115	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTCATGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	130640702	130663450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130640750_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658078_130658178_130659327_130659417_130661771
47728	chr5	+	3777	1	NIC	ENSMUSG00000107385.4	novel	2764	5	NA	NA	2904	-248	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAACTGTAATTTTGC	NA	False	NA	NA	False	NA	NA	NA	67624149	67627926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_67624100_67627900
47729	chr1	+	1451	10	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	901.596238777524	9	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724141	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731635_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59749685_59749812_59750429
47730	chr13	+	682	1	Antisense	novelGene_ENSMUSG00000114547.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGCATAAGTGGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	112730122	112730804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_112730100_112730800
47731	chr5	+	2389	10	FSM	ENSMUSG00000058503.12	ENSMUST00000196059.5	1961	10	-8	-420	0	-5	multi-exon	FALSE	canonical	0	0	junction_9	63.1977105383095	382	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGTTTGTTGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	3593835	3620233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
47732	chr4	-	1503	5	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	-61	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	426.084498661944	1	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127223015	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219453_127219504_127219677_127219747_127220270_127220327_127220565_127222868
47734	chr13	-	3766	7	ISM	ENSMUSG00000021589.14	ENSMUST00000022078.12	4980	12	33059	10	2642	-10	3prime_fragment	FALSE	canonical	3	85	junction_5	10.2902326936221	43	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACAAGTTCAATGAA	NA	False	NA	NA	False	NA	NA	NA	76058927	76017665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_76020581_76024289_76024387_76025491_76025659_76026915_76027090_76041024_76041146_76050296_76050410_76058748
47735	chr4	-	2226	13	NNC	ENSMUSG00000003644.18	novel	2982	21	NA	NA	-4265	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	330.416267338977	25	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCGCCCGCTCTTCCTT	9280	False	NA	NA	False	NA	NA	NA	133592618	133574604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592531
47737	chr5	+	1257	8	FSM	ENSMUSG00000029152.14	ENSMUST00000071081.13	1311	8	38	16	-10	0	multi-exon	FALSE	canonical	1	2	junction_7	338.614704889417	27	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	NA	False	NA	NA	NA	73450164	73471284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73470785
47738	chr3	-	1674	1	Intergenic	novelGene_3082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	78	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11080253	11078579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_11078600_11080300
47739	chr1	+	2021	8	NIC	ENSMUSG00000026240.13	novel	5383	8	NA	NA	49	-66	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	161.544206371646	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTTGTGTCAATATT	NA	False	NA	NA	False	NA	NA	NA	86514912	86533982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_86514958_86515068_86515190_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
47740	chr6	-	3304	9	FSM	ENSMUSG00000036667.15	ENSMUST00000045054.11	5257	9	-9	1962	-9	-22	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	9	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACCTGAGGAGAGGTAAAA	6064	False	NA	NA	False	NA	NA	NA	42687031	42646897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42686892
47741	chr16	+	1704	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	6	-576	-2	576	multi-exon	FALSE	canonical	3	220	junction_2	23	1417	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATGAGCGGAGCCAGTA	5905	False	NA	NA	False	NA	NA	NA	20430348	20438337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20430571_20436375_20436660_20437139
47742	chr19	+	3957	13	FSM	ENSMUSG00000025192.14	ENSMUST00000081079.6	5911	13	169	1785	1	-1785	multi-exon	FALSE	canonical	2	4	junction_9	3.63623737154524	32	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTTTTCTTCCTTTTCT	2808	False	NA	NA	False	NA	NA	NA	43678279	43720351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_43678344_43678617_43678721_43679456_43679640_43692637_43692844_43693318_43693470_43700173_43700278_43704712_43704770_43705888_43706023_43710187_43710355_43713652_43713978_43715281_43715368_43716428_43716591_43718136
47743	chr2	+	1424	1	Intergenic	novelGene_2618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATGGCCCTCCCCAT	NA	False	NA	NA	False	NA	NA	NA	37842241	37843665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_37842200_37843700
47744	chr19	+	840	5	FSM	ENSMUSG00000071644.11	ENSMUST00000135025.2	1272	5	128	304	128	-304	multi-exon	FALSE	canonical	3	8905	junction_2	398.043025312591	109	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGAACTTTTTCCTGTCC	6334	False	NA	NA	False	NA	NA	NA	8949895	8955539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
47745	chr5	-	2968	16	FSM	ENSMUSG00000042078.15	ENSMUST00000058472.13	3379	16	359	52	156	-52	multi-exon	FALSE	canonical	1	1	junction_9	7.27552976307109	66	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGGATTTAAATCTGGT	NA	False	NA	NA	False	NA	NA	NA	114229272	114165022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866_114180993_114183628_114183693_114192537_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203586_114203748_114229212
47746	chr17	+	1838	10	NNC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	82.474238402061	22	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGGCAAGTGTTTACA	NA	False	NA	NA	False	NA	NA	NA	12338178	12438529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429570_12429635_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
47747	chr18	-	2638	4	NIC	ENSMUSG00000056153.16	novel	1004	4	NA	NA	3	-20	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	91.4925619320439	1	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAACAAATATATACCCAA	NA	False	NA	NA	False	NA	NA	NA	88912337	88886638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_88889043_88905115_88905177_88905336_88905458_88912285
47748	chr7	+	681	1	Intergenic	novelGene_2910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGTCTGGTAAGTTAAC	NA	False	NA	NA	False	NA	NA	NA	28510900	28511581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_28510900_28511600
47749	chr9	-	1390	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	1	0	1	0	multi-exon	FALSE	canonical	3	285	junction_5	67.9187750183997	695	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7881	False	NA	NA	False	NA	NA	NA	106563113	106535950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
47750	chr4	-	2750	18	NNC	ENSMUSG00000062627.10	novel	1995	8	NA	NA	0	-3151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.6888981854374	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAACCATAAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	94867315	94838412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_94839012_94839162_94839296_94840410_94840600_94841099_94841175_94841734_94841786_94842108_94842164_94845286_94845376_94847149_94847228_94848564_94848669_94849939_94850071_94853365_94854110_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
47751	chr7	-	2943	8	NIC	ENSMUSG00000030583.17	novel	3697	10	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_5	17.8004815344176	88	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGCTGGTGTGTTCTCC	1035	False	NA	NA	False	NA	NA	NA	29041279	29019802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29021713_29023594_29023677_29025187_29025324_29028409_29028554_29030722_29030970_29031649_29031816_29038380_29038603_29041243
47752	chr9	-	2974	7	FSM	ENSMUSG00000045519.16	ENSMUST00000068079.14	4751	7	54	1723	54	-1723	multi-exon	FALSE	canonical	1	1	junction_4	13.5113121330075	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACACTAGTTGACTTCAA	NA	False	NA	NA	False	NA	NA	NA	20296419	20258154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20260456_20260876_20260960_20261827_20261909_20263133_20263261_20264048_20264138_20265359_20265546_20296312
47753	chr14	+	1872	12	ISM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	30547	15	30520	-15	3prime_fragment	FALSE	canonical	3	387	junction_3	27.8080789735348	1	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGGAAATGTCTTTCT	263	False	NA	NA	False	NA	NA	NA	25873126	25887213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
47754	chr12	+	3131	5	FSM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	19	7	18	-7	multi-exon	FALSE	canonical	3	214	junction_4	19.0574788468989	276	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGACACTTTGGTGTACT	NA	False	NA	NA	False	NA	NA	NA	8821341	8843708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637
47755	chr6	-	2220	11	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTATCCTCGATTACTA	NA	False	NA	NA	False	NA	NA	NA	37943101	37922481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37922621_37926154_37926330_37928381_37928561_37930432_37930562_37933334_37933409_37933936_37934108_37934443_37934771_37935494_37935629_37937714_37937791_37941637_37941786_37942433
47756	chr18	-	1004	4	NNC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	4	-5602	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_2	171.821612920688	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCTTGACTGCCATCC	6801	False	NA	NA	False	NA	NA	NA	74340814	74335151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_74335759_74337334_74337460_74339833_74339956_74340664
47757	chr11	-	2390	10	FSM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	-75	21	-75	-21	multi-exon	FALSE	canonical	3	37	junction_6	8.73053390247253	133	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGTATTGATTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	86964963	86924713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581_86936701_86947617_86947664_86950250_86950387_86954724_86954768_86964661
47758	chr10	+	1880	10	NNC	ENSMUSG00000001786.15	novel	5388	9	NA	NA	1	4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	112.979622329553	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTGACTTTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	85857836	85884191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_85858009_85860431_85860575_85864872_85865101_85866791_85866934_85868823_85869015_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
47759	chr1	-	2668	21	NNC	ENSMUSG00000042699.12	novel	4616	28	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.5479907688059	2	67	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATTGATTGTGTCATT	NA	False	NA	NA	False	NA	NA	NA	153363389	153331511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_153331696_153338297_153338451_153340085_153340160_153340372_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
47760	chr10	-	911	6	NNC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	0	7484	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	69.5902291992202	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGTGGAAAGTTCTGCAA	5716	False	NA	NA	False	NA	NA	NA	4382334	4368609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_4368632_4369806_4369902_4372081_4372191_4377170_4377692_4379076_4379172_4382265
47762	chr14	+	1572	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	174	16	122	-13	multi-exon	FALSE	canonical	3	2255	junction_1	40	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATGTTGATACACACG	6713	False	NA	NA	False	NA	NA	NA	76742091	76745189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
47763	chr4	-	470	1	Intergenic	novelGene_2163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	148683566	148683096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148683100_148683600
47764	chr10	+	3091	14	FSM	ENSMUSG00000020212.15	ENSMUST00000020437.13	3074	14	-15	-2	6	2	multi-exon	FALSE	canonical	3	66	junction_4	15.3152281412244	98	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGATGCTTCTGTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	117977721	118004904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
47765	chr7	+	1044	5	ISM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	8165	8	8023	-8	3prime_fragment	FALSE	canonical	3	1128	junction_3	24.4578719434051	2	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATCTCTCTCTCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	121766826	121769088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
47766	chr1	+	3649	18	NNC	ENSMUSG00000026604.18	novel	3810	2	NA	NA	10596	151	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.0195759084546	19	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCCCTCTTTGGAATAA	NA	False	NA	NA	False	NA	NA	NA	189529464	189602416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_189529554_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220_189583705_189587121_189587266_189588830_189589050_189592654_189592784_189595400_189595636_189597568_189597733_189602123
47767	chr4	-	2142	7	NIC	ENSMUSG00000051517.15	novel	1508	8	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	106	junction_4	12.5088857306405	410	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTTCCTGTCTAAATCA	-20	True	NA	NA	False	NA	NA	NA	43499667	43496143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43496721_43496820_43496910_43497086_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
47768	chr3	-	3318	26	NNC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	22	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	214.009248398288	1	183	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAAATACAATAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	100069691	100045537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050679_100050770_100051008_100051144_100051638_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057264_100058274_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
47770	chr3	+	1244	9	NNC	ENSMUSG00000033554.18	novel	1558	8	NA	NA	-69	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	118.326811733436	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATATATTGTTTTATAATC	7653	False	NA	NA	False	NA	NA	NA	115681726	115722734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_115681812_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722479
47771	chr1	+	2714	10	NNC	ENSMUSG00000026179.15	novel	2859	9	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	27.8957494881599	2	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTCTGAGCTCTCAAT	9437	False	NA	NA	False	NA	NA	NA	74371842	74392845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916_74391919_74391989
47772	chr17	-	2676	9	NNC	ENSMUSG00000002017.11	novel	2817	8	NA	NA	4	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.5807759011065	122	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGCTCTGGGAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	75858853	75844085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_75845304_75845351_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
47773	chr2	-	2222	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	30	0	30	0	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	68	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	NA	False	NA	NA	NA	152174543	152158253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
47774	chr17	+	1654	6	NIC	ENSMUSG00000073423.11	novel	1211	7	NA	NA	2	13	intron_retention	FALSE	canonical	3	10	junction_1	164.259063676864	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCATCTGCGCTGGCG	4919	False	NA	NA	False	NA	NA	NA	33848065	33850703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_33848673_33848743_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
47775	chr14	+	1599	5	NNC	ENSMUSG00000093948.8	novel	1239	4	NA	NA	-191544	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	29.7016413687863	4	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAACTCTTCACTCTTAAG	NA	False	NA	NA	False	NA	NA	NA	42286350	42485559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_42286471_42477652_42478059_42479014_42479147_42479826_42480008_42484799
47776	chr5	-	551	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	-54	-56	-54	56	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129205635	129205084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129205100_129205600
47777	chrX	-	2460	14	Antisense	novelGene_ENSMUSG00000001127.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	257	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTCCTCTCAGTCCA	NA	False	NA	27	True	NA	NA	NA	20726724	20714812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20714857_20716163_20716320_20716481_20716587_20717703_20717814_20717900_20718052_20718168_20718266_20719554_20719699_20719881_20720053_20720149_20720353_20723848_20724027_20724114_20724168_20724636_20724751_20724979_20725108_20725918
47778	chr14	+	542	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	-2	343	-2	1	multi-exon	FALSE	canonical	3	1636	junction_1	5972.09066315046	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGTGGGGCTTTGAGAG	NA	False	NA	NA	False	NA	NA	NA	4198664	4200393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
47779	chr2	-	2074	18	Antisense	novelGene_ENSMUSG00000027006.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCATTGTGGGAAAGGCG	NA	False	NA	NA	False	NA	NA	NA	80176937	80146017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_80146148_80147590_80147942_80149501_80149666_80151586_80151638_80155002_80155087_80155338_80155470_80155960_80156054_80156999_80157078_80158413_80158459_80161611_80161751_80163274_80163357_80164063_80164185_80165798_80165886_80170828_80170945_80171155_80171271_80174258_80174309_80175268_80175423_80176854
47780	chr15	-	1474	5	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	390	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	720.858299182301	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCGACCCTGCCAGCGTT	NA	False	NA	NA	False	NA	NA	NA	83056403	83037702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038763_83046039_83046158_83046432_83046506_83050275_83050408_83056312
47782	chr4	+	1615	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	794.986041107362	4	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2930	False	NA	NA	False	NA	NA	NA	128887077	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887191_128892992_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
47783	chr8	+	814	5	NNC	ENSMUSG00000008450.9	novel	948	5	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1489.99471475573	2	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAACAGTTTAAATTGT	NA	False	NA	NA	False	NA	NA	NA	106587270	106605960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603168_106605436
47784	chr17	-	4008	24	Antisense	novelGene_ENSMUSG00000036636.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	199	17	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGACCCGCGCCCAGGTC	NA	False	NA	NA	False	NA	NA	NA	25381060	25352398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_25352582_25363400_25363464_25364540_25364624_25364750_25364838_25365321_25365424_25365743_25365852_25366681_25366759_25368006_25368075_25368184_25368267_25369158_25369257_25369518_25369578_25370087_25370204_25370675_25370731_25371319_25371390_25371993_25372123_25372698_25372801_25374343_25374557_25376111_25376240_25376458_25376538_25376834_25376979_25378441_25378500_25378581_25378756_25379096_25379182_25379415
47785	chr4	-	2016	11	NNC	ENSMUSG00000032897.18	novel	2006	10	NA	NA	512	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	187.988004936485	2	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACTTGAGAATCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	120682369	120614643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625289_120625412_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682221
47786	chr12	-	1112	9	FSM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	85	2470	-58	-193	multi-exon	FALSE	canonical	3	904	junction_8	86.5761947650739	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAACATTCATGGTCGCA	54	False	NA	NA	False	NA	NA	NA	78908327	78889968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
47787	chr7	+	1207	1	Antisense	novelGene_ENSMUSG00000107383.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGGAACCTTGCCGGC	NA	False	NA	NA	False	NA	NA	NA	116423669	116424876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_116423700_116424900
47788	chr11	+	1205	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-14	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654531_120654937
47789	chr11	+	3791	3	FSM	ENSMUSG00000034394.15	ENSMUST00000040750.4	3798	3	2	5	2	-5	multi-exon	FALSE	canonical	3	7	junction_1	5	21	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGCCTTCTGGAGTGCA	NA	False	NA	NA	False	NA	NA	NA	4217096	4222509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4217120_4218183_4218366_4218923
47791	chr7	-	2351	5	NNC	ENSMUSG00000062116.11	novel	2042	5	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	23.8890665368072	17	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCTTTAATGACTCTTGA	6264	False	NA	NA	False	NA	NA	NA	7124459	7117691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_7119200_7119611_7119711_7120784_7120912_7122030_7122410_7124221
47792	chrX_GL456233v2_random	-	2427	9	Intergenic	novelGene_4787	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	124.279863111447	2	56	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTACATTGAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	134108	105713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_GL456233v2_random_-_107176_107271_107510_109039_109133_116592_116661_119836_119928_123935_124074_125547_125606_127389_127545_133984
47794	chr7	+	1287	8	ISM	ENSMUSG00000033904.17	ENSMUST00000123178.8	6948	10	3726	4068	-624	486	3prime_fragment	FALSE	canonical	3	69	junction_5	12.7487494384703	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTAACAGAGCGCCTGTG	NA	False	NA	NA	False	NA	NA	NA	118324563	118332171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_118324683_118325225_118325366_118325722_118325840_118328845_118328948_118329180_118329298_118329890_118329965_118330919_118330983_118331616
47796	chr7	-	1653	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	92	0	4	0	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	2	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	79765048	79744593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
47797	chr7	+	958	5	NIC	ENSMUSG00000006333.15	novel	751	5	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	242	junction_4	5911.15982697135	105	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTTTATTGGTGTG	1311	False	NA	NA	False	NA	NA	NA	3707038	3709888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3709181_3709649
47798	chr3	-	2591	4	NIC	ENSMUSG00000028076.13	novel	1946	6	NA	NA	-12	-4	intron_retention	FALSE	canonical	3	57	junction_3	13.490737563232	85	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTATCCAGAGGTTTT	NA	False	NA	NA	False	NA	NA	NA	86906660	86903144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86903909_86903996_86904094_86904644_86906213_86906498
47799	chr4	+	3181	4	Intergenic	novelGene_2040	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCCCTTCTCACCGCTC	2292	False	NA	NA	False	NA	NA	NA	146289350	146300348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289519_146291416_146291510_146293457_146293573_146297543
47800	chr11	-	1944	7	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	560.149508811908	1	89	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	NA	False	NA	NA	NA	60701958	60678929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683889_60685661_60685779_60688350_60688394_60701729
47801	chr19	-	1027	1	NIC	ENSMUSG00000059734.8	novel	983	7	NA	NA	17	-763	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTAGGGCTAGAGGCCTTT	NA	False	NA	NA	False	NA	NA	NA	3962717	3961690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_3961700_3962700
47802	chr19	-	777	5	ISM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	748	8	748	-1	intron_retention	FALSE	canonical	3	1612	junction_1	173.253246722825	6528	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCTACCTGTTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	3961740	3958870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565
47803	chr5	+	1079	11	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-5	-1656	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	418.512138414168	6	14	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGTATGTAAAGCACATA	NA	False	NA	NA	False	NA	NA	NA	111478623	111534569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486179_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
47804	chr2	+	2127	16	NNC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	-1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	472.386546049831	1	90	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCAAACCCTGCGTG	7241	False	NA	NA	False	NA	NA	NA	29779844	29812540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783191_29791088_29791260_29792192_29792331_29793357_29793463_29793987_29794120_29802582_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
47805	chrX	+	1182	7	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	10953	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	879.954244391276	1	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52087966	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
47806	chr6	-	2152	8	NNC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	50	-6	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	78.843425307921	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTACATTGTGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	120508201	120486460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120507818
47807	chr1	+	2097	9	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	non_canonical	1	46	junction_1	80.4478674359986	1	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097904	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
47808	chrX	+	1242	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	-2	0	-2	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	4	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059301	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
47809	chr15	+	1968	11	FSM	ENSMUSG00000022556.12	ENSMUST00000228868.2	2002	11	31	3	-2	-3	multi-exon	FALSE	canonical	3	5	junction_3	91.0601998679994	4	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACATGAGAGTCCCCTTT	7152	False	NA	NA	False	NA	NA	NA	76361652	76385119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384537_76384616
47810	chr7	+	1633	11	Antisense	novelGene_ENSMUSG00000108494.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGGCTGTGCGGTGGGGA	1415	False	NA	NA	False	NA	NA	NA	79744593	79765056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_79744952_79745368_79745465_79745550_79745644_79745769_79745883_79747550_79747700_79747875_79748023_79748520_79748663_79748745_79748909_79750493_79750675_79752919_79752966_79764911
47811	chr9	-	2650	5	NNC	ENSMUSG00000079427.11	novel	725	4	NA	NA	90	-35	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	34.0661121937916	141	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAAGTGTAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	88601533	88570693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88571039_88585978_88586190_88597540_88597803_88598546_88598617_88599771
47813	chr17	+	2797	5	FSM	ENSMUSG00000071068.8	ENSMUST00000233092.2	2094	5	434	-1137	-12	1137	multi-exon	FALSE	canonical	1	2	junction_2	1.6583123951777	18	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGAAAGTGTCTTGTGCT	2002	False	NA	NA	False	NA	NA	NA	48607401	48618186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_48607625_48609639_48609961_48614907_48615302_48616146_48616254_48616434
47814	chr8	-	860	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	46	675	40	-675	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCGCTCTGTGGTCGCCT	NA	False	NA	NA	False	NA	NA	NA	108315050	108307687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
47816	chr15	+	1006	8	ISM	ENSMUSG00000058655.10	ENSMUST00000229400.2	1548	9	55	1322	55	-4	5prime_fragment	FALSE	canonical	3	620	junction_1	97.4779933301536	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGTACTCATCTCTTTC	NA	False	NA	-39	True	NA	NA	NA	101982353	101997460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291
47818	chr7	+	1355	8	NNC	ENSMUSG00000025439.6	novel	1504	7	NA	NA	-30	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	426.523105099446	95	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATATCGCTGTGATTTTGC	NA	False	NA	NA	False	NA	NA	NA	97345871	97368083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425_97367612_97367726
47819	chr9	+	2073	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	96	25	96	-25	multi-exon	FALSE	canonical	3	142	junction_1	0	169	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGGCTCCTGGGCTCCG	NA	False	NA	NA	False	NA	NA	NA	107411239	107415847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107412529_107415063
47820	chr17	+	1385	3	NNC	ENSMUSG00000006818.6	novel	644	3	NA	NA	4	-2019	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1628	6	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCCAGTGGTATGCTGT	NA	False	NA	NA	False	NA	NA	NA	13226886	13237002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227278_13235893
47821	chr16	-	2796	4	NIC	ENSMUSG00000063445.15	novel	1459	6	NA	NA	4	-7	intron_retention	FALSE	canonical	3	167	junction_3	13.5973853695808	4	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACAAATGGTTTCCCAAAA	4852	False	NA	NA	False	NA	NA	NA	4536964	4529187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4529468_4531503_4531695_4532280_4534400_4536758
47822	chr1	+	1764	15	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	21	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	234.644031308217	1	60	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGCTTTTATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	131080938	131101209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082976_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095888_131098788_131098849_131101040
47823	chr13	-	2463	4	ISM	ENSMUSG00000071291.11	ENSMUST00000091523.9	820	5	329	-1479	286	0	3prime_fragment	FALSE	canonical	1	2	junction_3	20.138409955991	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTCTTTGGTCATGCCA	NA	False	NA	NA	False	NA	NA	NA	67648277	67638286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648020
47826	chr1	-	2223	11	FSM	ENSMUSG00000026670.16	ENSMUST00000111351.10	2287	11	63	1	3	0	multi-exon	FALSE	canonical	3	181	junction_3	44.8905335232274	170	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTGTTTCTACCTTA	NA	False	NA	NA	False	NA	NA	NA	170002452	169969571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_169970142_169970965_169971033_169975564_169975616_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
47827	chrX	+	1093	2	ISM	ENSMUSG00000000355.14	ENSMUST00000148938.2	434	3	1238	-120	1238	94	3prime_fragment	FALSE	canonical	3	636	junction_1	0	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGATGACTCAATGTC	NA	False	NA	NA	False	NA	NA	NA	37699917	37702397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_37700711_37702097
47828	chr18	+	2351	23	NNC	ENSMUSG00000024507.7	novel	2684	24	NA	NA	-103	-86	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	105.941976946529	1	111	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTCTGGTTTCTTTAGAC	NA	False	NA	NA	False	NA	NA	NA	50261457	50329250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277898_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295274_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
47829	chr1	+	3041	9	FSM	ENSMUSG00000038576.16	ENSMUST00000153348.8	1898	9	200	-1343	-183	-16	multi-exon	FALSE	canonical	3	16	junction_5	5.55512151082224	57	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATTAAAAAAGAAAACGAC	NA	False	NA	NA	False	NA	NA	NA	182591776	182724140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986_182686176_182714904_182715097_182716332_182716478_182719447_182719831_182722763
47830	chr15	-	3251	27	NNC	ENSMUSG00000022557.12	novel	2491	16	NA	NA	1724	29195	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	91	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCACCTCTCCTCCAGGCT	NA	False	NA	-65	True	NA	NA	NA	76337219	76307993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76308034_76311306_76311417_76311711_76311856_76312100_76312140_76312440_76312585_76312847_76312901_76313351_76313404_76317500_76317596_76317736_76317820_76318026_76318140_76318260_76318357_76318880_76318988_76319969_76320105_76320203_76320317_76321433_76321595_76327453_76327603_76330713_76330881_76331367_76331560_76334279_76334422_76334836_76334961_76335265_76335414_76335551_76335741_76336005_76336161_76336241_76336376_76336444_76336547_76336624_76336693_76337023
47832	chr12	+	1078	4	NNC	ENSMUSG00000073184.5	novel	241	3	NA	NA	-66	8104	at_least_one_novel_splicesite	FALSE	canonical	2	24	junction_3	2.62466929133727	21	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTCTTTTATTATTATTA	NA	False	NA	NA	False	NA	NA	NA	19342747	19359369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_19342877_19350884_19351012_19351214_19351276_19358608
47834	chr5	-	891	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	-97	-114	-33	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	412	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548820	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
47835	ERCC-00162	+	435	1	FSM	ERCC-00162A	DQ516750	507	1	28	44	28	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	37	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAACATTTTTGAGAACC	NA	False	NA	NA	False	NA	NA	NA	28	463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00162_+_0_500
47836	chr9	-	2014	4	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	7	-6	intron_retention	FALSE	canonical	3	126	junction_2	1.88561808316413	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAACCTACTTGGCTCCT	8952	False	NA	NA	False	NA	NA	NA	110453492	110450208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110450806_110450907_110451051_110451139_110452304_110453382
47837	chr4	+	1651	16	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	59.5134345243903	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGAGAACTTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	116664943	116676630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
47838	chr6	-	1410	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	4	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	384.440060347514	32	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTGGGAGAGCTGTAT	NA	False	NA	NA	False	NA	NA	NA	120893793	120870081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120870800_120872616_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
47839	chr9	+	388	1	Intergenic	novelGene_1109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTCTATGAATGCAAG	NA	False	NA	NA	False	NA	NA	NA	72378790	72379178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_72378800_72379200
47840	chr9	+	1525	11	Antisense	novelGene_ENSMUSG00000090626.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1592	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGATGCGGTTGCCGTG	NA	False	NA	NA	False	NA	NA	NA	72379363	72399247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_72379923_72380938_72381077_72385019_72385192_72385620_72385707_72387880_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395357_72399019_72399101_72399207
47841	chr9	-	2975	11	NNC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_3	28.6986062379343	38	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACAGCTGATTGAACCTG	8958	False	NA	NA	False	NA	NA	NA	44329318	44321459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44321662_44321744_44321878_44321987_44322253_44322397_44322483_44323026_44324320_44324433_44324831_44324903_44324971_44328142_44328260_44328407_44328507_44328929_44329094_44329165
47845	chr8	-	1695	11	FSM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	-5	0	-5	0	multi-exon	FALSE	canonical	3	35	junction_10	43.9777216326631	290	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	NA	False	NA	NA	NA	57003897	56984556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003579
47846	chr16	+	1692	4	FSM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	14	12	14	2	multi-exon	FALSE	canonical	3	74	junction_3	4.96655480858378	258	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATAAGTCTTACTGGCTT	6506	False	NA	NA	False	NA	NA	NA	31918631	31926875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_31918930_31921784_31921863_31922701_31922866_31925723
47847	chr16	-	1661	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	25	-1	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	76.5371641753207	475	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGAGTGTTGGCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	18165922	18118691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18165734
47848	chr16	-	1792	5	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	34	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	2959.92832472342	25	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	NA	False	NA	NA	NA	84631859	84624758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_84624884_84625312_84625752_84625795_84626682_84628216_84628396_84631696
47850	chr3	+	3213	10	NNC	ENSMUSG00000000340.11	novel	3301	11	NA	NA	-1	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	67.4231157928042	7	148	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTATCATACTTTGTATG	NA	False	NA	NA	False	NA	NA	NA	116306775	116343619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339875_116341681
47851	chr11	-	2062	11	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	776.68439536275	1	124	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	5210	False	NA	NA	False	NA	NA	NA	88846282	88814847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826837_88834594_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
47852	chr1	+	2229	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	314	292	-7	-292	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	1	119	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTCCCCATATCATACAC	NA	False	NA	NA	False	NA	NA	NA	167177873	167195809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
47854	chr2	-	1515	13	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	-7	108	combination_of_known_splicesites	FALSE	canonical	1	3	junction_12	174.750039739306	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGCATGGTCCATAAAATG	NA	False	NA	NA	False	NA	NA	NA	48840296	48795219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48840129
47855	chr5	-	2189	4	FSM	ENSMUSG00000029726.17	ENSMUST00000031740.16	3128	4	939	0	939	0	multi-exon	FALSE	canonical	3	137	junction_2	12.2474487139159	150	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTCCAGCACTTTCTA	3665	False	NA	NA	False	NA	NA	NA	137783986	137780167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137782722
47857	chr10	-	1567	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	-8	873	-8	-871	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	1	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8737	False	NA	NA	False	NA	NA	NA	128401811	128394507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
47858	chr14	+	1417	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	60	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	832.766207020647	3	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAACATGATTGTGTG	1746	False	NA	NA	False	NA	NA	NA	26359288	26377988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375113_26377050_26377195_26377452
47859	chr7	-	3178	23	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-2556	259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	41.4362998124683	1	133	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTCACCACCGCCCGGCT	NA	False	NA	NA	False	NA	NA	NA	140691143	140680865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688705_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067
47860	chr4	-	1370	5	FSM	ENSMUSG00000028857.17	ENSMUST00000139030.2	546	5	7	-831	7	0	multi-exon	FALSE	canonical	3	79	junction_4	309.884151740614	50	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	133005074	132993355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_133004841
47862	chr10	-	2275	3	FSM	ENSMUSG00000039810.12	ENSMUST00000152539.8	992	3	234	-1517	234	1235	multi-exon	FALSE	canonical	3	17	junction_2	46	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAATTTCTTTGATGGC	NA	False	NA	NA	False	NA	NA	NA	128383274	128379431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128381408_128382696_128382761_128383039
47863	chrX	-	2517	5	FSM	ENSMUSG00000039201.11	ENSMUST00000133093.2	2560	5	54	-11	-13	0	multi-exon	FALSE	canonical	3	121	junction_3	12.051970793194	192	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATTTCTCTATTTC	NA	False	NA	NA	False	NA	NA	NA	8042143	8020710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_8022306_8022554_8023018_8038976_8039132_8040439_8040550_8041949
47864	chr6	-	809	1	Intergenic	novelGene_4264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGTCTTAGCCTATGTC	NA	False	NA	NA	False	NA	NA	NA	136792973	136792164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_136792200_136793000
47865	chr19	-	1331	8	NNC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_3	388.899126525433	3	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5862	False	NA	NA	False	NA	NA	NA	46327059	46318984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46319274_46319358_46319420_46319490_46319523_46319765_46319906_46319984_46320258_46320351_46320496_46321056_46321141_46326751
47866	chr8	+	2236	6	Antisense	novelGene_ENSMUSG00000031651.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAAGTCCAAATCTGTGA	NA	False	NA	NA	False	NA	NA	NA	43582851	43593075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43583726_43589312_43589408_43589570_43589593_43591600_43591889_43592076_43592683_43592724
47867	chr15	-	2321	10	NIC	ENSMUSG00000035845.18	novel	2130	10	NA	NA	65	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	17.9512371044518	22	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTGTCTTGTTGTTGGT	9342	False	NA	NA	False	NA	NA	NA	88703423	88689447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703170
47868	chr17	-	541	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2268.66078557373	13	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	NA	NA	NA	27854217	27849395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849481_27850173_27850230_27851252_27851325_27853079_27853218_27853299_27853450_27854177
47869	chr7	+	2367	8	ISM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	588	0	-20	0	3prime_fragment	FALSE	canonical	3	394	junction_5	16.39686381163	1	82	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	143383950	143402147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
47870	chr8	-	2909	16	NNC	ENSMUSG00000089745.2	novel	829	2	NA	NA	-37715	50007	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	40	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACTAGTAAAGAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	125070961	124981863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_124982417_125022094_125022185_125032247_125032408_125050410_125050506_125050726_125050799_125051009_125051074_125054828_125054948_125056446_125056539_125058746_125058836_125059306_125059410_125061012_125061140_125063311_125063406_125064000_125064083_125065179_125065305_125067553_125067675_125070038
47872	chr15	-	1300	9	NNC	ENSMUSG00000022474.16	novel	1291	9	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	547.234853033869	5	10	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTGTGGTGTTTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	81845058	81835310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835814_81836124_81836270_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842079_81844915
47873	chr4	-	1254	10	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	0	-5	combination_of_known_junctions	TRUE	canonical	3	113	junction_6	304.035816603534	1802	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACTGTTGCCTCCTGCA	NA	False	NA	NA	False	NA	NA	NA	123033744	123020912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030593_123030692_123031318_123031363_123032658_123032758_123033694
47874	chr17	-	1076	4	NNC	ENSMUSG00000073413.10	novel	404	2	NA	NA	-737	-2644	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	752	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAAGCTGTTCCCGGTTC	NA	False	NA	NA	False	NA	NA	NA	35297778	35295832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35295962_35296105_35296181_35296810_35296937_35297032
47876	chr10	-	1726	12	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_11	34.497095338258	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5724	False	NA	NA	False	NA	NA	NA	4382326	4353170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4382265
47877	chr4	+	1354	6	NNC	ENSMUSG00000028797.21	novel	1519	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	279.690257248979	11	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3187	False	NA	NA	False	NA	NA	NA	129494483	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248_129501834_129502014
47878	chr18	+	2196	3	NIC	ENSMUSG00000046668.10	novel	857	2	NA	NA	-4	3	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	135.5	169	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTCCTGGCTTCTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	35963362	35994744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35963453_35991445_35992510_35993702
47879	chr9	+	1631	14	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1105.58872908049	1	80	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1178	False	NA	NA	False	NA	NA	NA	108437667	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440452_108440570_108440711_108440797_108440891_108441833_108441978_108442064_108442210_108442300_108442455_108442527_108442610_108442700
47880	chr6	+	1952	14	NNC	ENSMUSG00000029913.15	novel	2155	15	NA	NA	18422	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	44.7238734019204	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTACGGCTCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	65774506	65913356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_65774598_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
47881	chr4	-	1683	3	NNC	ENSMUSG00000045268.14	novel	1721	2	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	89	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTGTGTACTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	119031391	119026712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119028240_119030859_119030959_119031334
47883	chr2	+	1373	4	Intergenic	novelGene_2818	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	18.7794213613377	3	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCTAATTTATATTTATT	NA	False	NA	NA	False	NA	NA	NA	172419560	172468687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172419745_172420215_172420303_172467241_172468012_172468355
47884	chrX	-	2858	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	21	-1593	21	1593	multi-exon	TRUE	canonical	3	590	junction_4	36.4862987983161	1893	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTTGATGGAGGTGATT	NA	False	NA	NA	False	NA	NA	NA	71961996	71955544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
47885	chr13	-	1479	6	FSM	ENSMUSG00000021576.7	ENSMUST00000022060.7	1131	6	41	-389	4	389	multi-exon	FALSE	canonical	3	601	junction_2	85.1666601435092	3589	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTAGTTTTGGCCGTTTT	NA	False	NA	NA	False	NA	NA	NA	74465399	74451238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74452168_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
47886	chr1	-	4699	1	ISM	ENSMUSG00000040865.16	ENSMUST00000165066.8	13529	12	61747	21	11041	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	67	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATCTTGCTGTGAAGTA	4319	False	NA	NA	False	NA	NA	NA	63091679	63086980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_63087000_63091700
47887	chr19	+	2947	5	NIC	ENSMUSG00000024829.13	novel	802	7	NA	NA	-9	-6	intron_retention	FALSE	canonical	3	1715	junction_4	85.7274022702193	4	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAGACTGAGCCTGTGA	7357	False	NA	NA	False	NA	NA	NA	3333045	3341189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_3333172_3334759_3334818_3335309_3337756_3338983_3339088_3340976
47888	chr11	-	2469	22	FSM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	13	0	13	0	multi-exon	FALSE	canonical	3	20	junction_20	9.40183800238705	62	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	9586	False	NA	NA	False	NA	NA	NA	69786352	69772392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
47890	chr9	+	1366	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	172	0	-172	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	2	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATCAAACATGTGGTG	NA	False	NA	NA	False	NA	NA	NA	64080656	64085776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
47891	chr15	-	1723	5	Antisense	novelGene_ENSMUSG00000000346.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCGGCGTCGCGGACGGT	NA	False	NA	NA	False	NA	NA	NA	100518618	100513572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_100513604_100514791_100514911_100515803_100516050_100517249_100517595_100517636
47892	chr10	-	3241	8	FSM	ENSMUSG00000032714.7	ENSMUST00000040580.7	3288	8	43	4	43	-4	multi-exon	TRUE	canonical	3	17	junction_5	4.14039335605413	36	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTCTGTGACTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	78427755	78420340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_78421746_78421923_78422150_78422792_78422954_78423164_78423292_78424540_78424756_78424934_78425580_78425735_78426078_78427635
47893	chrX	+	540	1	ISM	ENSMUSG00000059327.10	ENSMUST00000134582.2	1877	2	31	335123	31	-335123	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTCACCTAGGAGGGGC	NA	False	NA	NA	False	NA	NA	NA	99019242	99019782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_99019200_99019800
47894	chrX	+	4274	6	ISM	ENSMUSG00000059327.10	ENSMUST00000113779.8	4955	8	405848	5	-3689	-4	3prime_fragment	FALSE	canonical	3	9	junction_5	7.08801805866774	31	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATCCTTGACATTATCT	NA	False	NA	NA	False	NA	NA	NA	99425059	99444361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_99425085_99433307_99433488_99434946_99434982_99435938_99435991_99438624_99438756_99440510
47895	chr8	+	2089	11	NNC	ENSMUSG00000006585.4	novel	2189	10	NA	NA	27	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	295.264102118764	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAACCTGTCACCGTAAA	2624	False	NA	NA	False	NA	NA	NA	123294791	123299869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_123294885_123294948_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
47896	chr14	+	1712	4	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3269	-55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.6333157709821	133	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGGAAATATATCAGTATT	NA	False	NA	NA	False	NA	NA	NA	43129223	43163406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_43129293_43132378_43132821_43157302_43157435_43162337
47897	chr8	-	1597	2	Antisense	novelGene_ENSMUSG00000071041.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	78	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAGGCCTCTAAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	100758788	100757130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_100757370_100757430
47898	chr6	+	1645	3	FSM	ENSMUSG00000038871.6	ENSMUST00000045372.6	2220	3	91	484	-58	-484	multi-exon	FALSE	canonical	3	82	junction_2	7.5	235	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGCAAGGTGCCTCGAGTG	NA	False	NA	NA	False	NA	NA	NA	34453232	34482064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34453358_34464224_34464886_34481205
47899	chr7	+	2677	5	Intergenic	novelGene_2941	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	78	junction_1	56.6629287982893	2	61	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCATACTGCAGAGAA	NA	False	NA	NA	False	NA	NA	NA	42903175	42914969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903292_42906867_42906982_42910109_42910237_42910431_42910493_42912710
47900	chr11	+	4214	21	NNC	ENSMUSG00000020536.13	novel	4268	21	NA	NA	-25	-29	intron_retention	TRUE	non_canonical	0	0	junction_12	107.348253362596	1	246	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGCATTTAATATCT	NA	False	NA	NA	False	NA	NA	NA	60590645	60604983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60590768_60593609_60593708_60595494_60595577_60595676_60595808_60596792_60596949_60597018_60597182_60597263_60597400_60597577_60597633_60597784_60597940_60598014_60598239_60598406_60598475_60599369_60599524_60599619_60599720_60600260_60600554_60600806_60600955_60601118_60601267_60602161_60602458_60602825_60603052_60603204_60603320_60603447_60603555_60603746
47901	chr5	+	1979	19	NNC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	22	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	207.086103640461	1	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTTGTAATATTTA	NA	False	NA	NA	False	NA	NA	NA	74696185	74756814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752550_74752638_74752655_74755734_74755873_74756499
47902	chr11	+	2442	18	NNC	ENSMUSG00000034121.13	novel	2194	7	NA	NA	-4950	-4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	43.1100627307653	6	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCCTCTGTGGACTCTC	1506	False	NA	NA	False	NA	NA	NA	87739090	87754625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87739153_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
47903	chr19	-	1983	15	FSM	ENSMUSG00000024830.18	ENSMUST00000130469.8	1979	15	-8	4	8	-4	multi-exon	FALSE	canonical	1	2	junction_9	32.5877935079116	208	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCAGAGTGGCTTTTGC	2795	False	NA	NA	False	NA	NA	NA	4213307	4206797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4209564_4209705_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
47904	chr17	+	2693	6	FSM	ENSMUSG00000044477.13	ENSMUST00000226208.3	3039	6	534	-188	26	188	multi-exon	FALSE	canonical	3	90	junction_1	13.1301180497359	194	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGGGACCATCTCTTG	NA	False	NA	NA	False	NA	NA	NA	30224240	30429184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30372276_30372343_30411536_30411705_30426991
47908	chr2	-	1980	12	NNC	ENSMUSG00000089917.8	novel	1782	14	NA	NA	6	-11	intron_retention	FALSE	non_canonical	0	0	junction_5	34.4008937035552	283	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATAAAGCTTTATTTAG	4553	False	NA	99	True	NA	NA	NA	181223795	181210968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_181211184_181211260_181211825_181211925_181211989_181212101_181212196_181212292_181212397_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
47911	chr15	-	1714	5	NIC	ENSMUSG00000022241.7	novel	859	6	NA	NA	-384	333	intron_retention	FALSE	canonical	3	3135	junction_4	68.9728207339674	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACCAAAGATATCAAGACC	NA	False	NA	NA	False	NA	NA	NA	11388480	11383757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387454_11387557_11387659_11387786
47912	chr17	-	1443	5	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	-7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	984.079392122404	17	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAAAAGAGCCGTTCGC	NA	False	NA	NA	False	NA	NA	NA	47093570	47084836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47085864_47090228_47090349_47091316_47091478_47092708_47092818_47093544
47913	chr10	+	675	4	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	3624	15	-1754	5prime_fragment	FALSE	canonical	3	6189	junction_1	315.456283289249	124	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGGCAATATCATGGT	2196	False	NA	NA	False	NA	NA	NA	81012479	81014708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514
47915	chr9	+	2739	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	163	5	39	0	multi-exon	FALSE	canonical	3	248	junction_1	14.5086181285469	91	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGTGTTTAGTGTTTTG	-1	True	NA	NA	False	NA	NA	NA	7764204	7794329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
47916	chr2	+	1310	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	67	0	6	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	2708	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	155850031	155860199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
47919	chr16	-	2716	4	FSM	ENSMUSG00000065979.13	ENSMUST00000096272.11	2663	4	-29	-24	-7	24	multi-exon	FALSE	canonical	3	85	junction_3	6.59966329107444	236	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCCCACATGCCTGTGC	NA	False	NA	NA	False	NA	NA	NA	11727316	11621560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_11623448_11646038_11646462_11705441_11705661_11727129
47920	chr9	-	1555	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	-20	-4	-20	4	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	2605	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATCCTGTGTATATTTGT	NA	False	NA	NA	False	NA	NA	NA	70328849	70314969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
47921	chr5	+	2063	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	29	1533	5	63	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	77	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCAGTGACATTAGGAAC	NA	False	NA	NA	False	NA	NA	NA	77122558	77146251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
47922	chr10	-	2570	4	Intergenic	novelGene_3545	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	33	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCACCTCCCTCTCTCTC	3688	False	NA	NA	False	NA	NA	NA	120366511	120359257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_120359469_120360120_120360189_120363519_120363638_120364338
47925	chr18	+	239	1	FSM	ENSMUSG00000058064.7	ENSMUST00000079733.7	534	1	333	-38	333	38	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATGCAAAAAAAAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	15966183	15966422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_15966200_15966400
47926	chr11	-	2693	19	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	17	794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	114.434748780233	1	115	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACTTGGAAGATGAGTGA	NA	False	NA	NA	False	NA	NA	NA	79853176	79825881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847597_79848177_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
47927	chr1	+	2445	21	NNC	ENSMUSG00000025995.17	novel	2953	21	NA	NA	3	-55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	143.675711238887	1	120	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGAGCTGAGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	45834669	45862618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846924_45851207_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
47928	chr1	+	1353	11	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	837.96730843154	6	42	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724148	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737592_59745883_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
47929	chr15	-	1418	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	-20	7	1	0	multi-exon	FALSE	canonical	3	16	junction_6	184.382889661704	1480	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8926	False	NA	NA	False	NA	NA	NA	75801595	75796531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
47930	chr3	-	3834	3	FSM	ENSMUSG00000074489.10	ENSMUST00000140259.2	816	3	-3021	3	0	-1	multi-exon	FALSE	canonical	3	35	junction_2	5	36	102	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTGGGCTGGAGTCT	7128	False	NA	NA	False	NA	NA	NA	88280050	88275929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88276460_88276602_88276636_88276779
47932	chr18	+	2171	18	NIC	ENSMUSG00000024410.16	novel	2170	20	NA	NA	9	125	intron_retention	FALSE	canonical	3	29	junction_1	66.9302689345708	4	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGTATTTTATTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	12301817	12322756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_12301960_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216
47933	chr1	+	3266	1	NIC	ENSMUSG00000026111.16	novel	1414	6	NA	NA	4378	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	36	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	NA	NA	NA	37474802	37478068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_37474800_37478100
47934	chr8	-	1616	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-23575	-1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_7	87.6444580130892	28	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	43618098	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43593679_43593776_43594003_43594341_43595725_43595759_43596978_43597082_43618053
47935	chr1	-	1172	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	0	1999	0	243	multi-exon	FALSE	canonical	3	578	junction_5	147.434866975217	3342	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACTCTTTGGAATCT	456	False	NA	NA	False	NA	NA	NA	170978172	170956732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
47936	chr17	-	2354	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	29	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	1	114	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGTGGTTTCTATGCTC	NA	False	NA	NA	False	NA	NA	NA	28841396	28808565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808619_28808686_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
47938	chr9	-	3978	1	Intergenic	novelGene_1013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	567	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCACGTGGGATGCTGAG	NA	False	NA	NA	False	NA	NA	NA	36618939	36614961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_36615000_36618900
47939	chr9	-	321	1	Intergenic	novelGene_1012	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTCCCTTCTCTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	36614807	36614486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_36614500_36614800
47940	chr13	-	1295	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	32	0	-4	0	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	1367	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	19579933	19541845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
47941	chr14	-	3529	12	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	25.9930060523281	51	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	34032445	33958989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_33995443_33995534_34030996_34031052_34032123
47942	chr15	-	917	8	NNC	ENSMUSG00000060036.15	novel	1781	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13504.8362750656	1	27	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	4341	False	NA	NA	False	NA	NA	NA	79966784	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964042_79964621_79964646_79965853_79965985_79966590
47943	chr8	-	1574	9	NNC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	161.352438391863	3	15	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	NA	False	NA	NA	NA	108151670	108139117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108144977_108145309_108145404_108148113_108148245_108151369_108151503_108151597
47944	chr8	-	1668	12	NNC	ENSMUSG00000002949.16	novel	1790	13	NA	NA	13	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	161.972143304371	54	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCAGTTTGAACGGTTTG	NA	False	NA	NA	False	NA	NA	NA	4325900	4309736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316846_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
47945	chr10	+	3272	16	ISM	ENSMUSG00000020105.10	ENSMUST00000074807.8	4016	19	28178	125	7709	0	3prime_fragment	FALSE	canonical	3	60	junction_1	14.9954067041285	72	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACTGAAGTTTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	125830299	125851103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_125830419_125831302_125831447_125832483_125832628_125832930_125833075_125833472_125833617_125834818_125834900_125835957_125836030_125838269_125838342_125838810_125838975_125842556_125842878_125844338_125844621_125845655_125846109_125846769_125846929_125848878_125849023_125849120_125849391_125850544
47946	chr13	-	395	4	ISM	ENSMUSG00000098692.2	ENSMUST00000166080.2	779	6	13	17160	13	-17160	5prime_fragment	FALSE	canonical	0	0	junction_1	12.7279220613579	1	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCAAGGATGGGCACATC	2318	False	NA	NA	False	NA	NA	NA	67523839	67510469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_67510567_67520295_67520392_67520869_67520997_67523764
47947	chr17	-	1824	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	106	7935	16	-4	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	2	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACATAAAGGTCTGGGCA	NA	False	NA	NA	False	NA	NA	NA	30831527	30811844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
47948	chr17	-	2625	13	NIC	ENSMUSG00000024137.10	novel	2574	14	NA	NA	-10	-4	intron_retention	FALSE	canonical	3	73	junction_5	16.7332005306815	8	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGCAGTTTGTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	24674270	24662759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24663312_24663387_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
47949	chrX	-	3486	23	FSM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	56	911	56	-911	multi-exon	FALSE	canonical	3	107	junction_14	25.8655535317559	80	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAAACTTTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	165223644	165173939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_165174055_165174886_165174955_165175413_165175567_165176172_165176328_165183915_165184030_165186537_165186636_165188421_165188579_165188992_165189605_165191584_165191697_165192483_165192615_165193601_165193792_165194811_165194904_165196296_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
47950	chr5	+	3881	31	Antisense	novelGene_ENSMUSG00000070733.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAGGTTGGGTTGGGGA	NA	False	NA	NA	False	NA	NA	NA	73243931	73313668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_73243969_73244219_73244378_73245712_73245818_73246433_73246599_73247943_73248117_73250465_73250560_73252758_73252817_73253616_73253742_73254716_73254913_73255501_73255769_73257284_73257378_73257630_73257815_73258796_73259037_73262019_73262125_73265304_73265438_73265811_73265985_73267528_73267615_73269704_73269815_73270091_73270198_73272600_73272644_73275826_73275932_73277163_73277264_73279208_73279299_73279554_73279727_73282026_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293661_73293721_73305360_73305566_73313566
47951	chr17	-	3902	9	ISM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	102	2736	102	-7	5prime_fragment	FALSE	canonical	3	797	junction_6	66.6966078597705	47	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTGAATGCCTCTGTCA	NA	False	NA	NA	False	NA	NA	NA	15181433	15168006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
47952	chr17	+	1479	6	NNC	ENSMUSG00000046711.17	novel	584	5	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2145.42337080587	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACAGTCTCTGGTGTA	NA	False	NA	NA	False	NA	NA	NA	27775602	27782637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778678_27779901_27779986_27780438_27780486_27781411_27782111_27782242
47953	chr8	-	1881	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	3	-3	intron_retention	FALSE	canonical	3	157	junction_3	26.0254166931019	2	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGAAGAAAGTTAGCGAT	NA	False	NA	NA	False	NA	NA	NA	106578637	106571311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576556_106578502
47954	chr3	+	1644	8	NNC	ENSMUSG00000027777.16	novel	1730	7	NA	NA	154	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	217.107233920034	372	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATACGTCCTTTTGCTCA	NA	False	NA	NA	False	NA	NA	NA	68479731	68533793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_68479997_68481968_68482041_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
47955	chr8	+	2250	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	42	3	42	-3	multi-exon	FALSE	canonical	3	177	junction_1	13	493	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATCTTGTGGCCCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	26648210	26654176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_26648550_26650802_26650999_26652461
47956	chr12	-	1183	9	NIC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	5167	-2517	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	91.7210444772627	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGCAAATATCTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	55340640	55328292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339500_55340566
47958	chr4	-	2470	11	FSM	ENSMUSG00000028391.17	ENSMUST00000030087.14	1440	11	-12	-1018	-3	16	multi-exon	FALSE	canonical	3	150	junction_2	19.4548194543152	429	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAGAAAAAAGTTAT	NA	False	NA	NA	False	NA	NA	NA	62389136	62370852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
47959	chr7	-	1776	11	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	142	junction_8	402.203443545676	688	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	NA	NA	NA	19005742	18990853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994796_18998450_18998496_18998578_18998751_19005438
47961	chr13	-	1502	5	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	4	409	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	58.243025333511	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAACTCATTCACGTAT	NA	False	NA	NA	False	NA	NA	NA	62564853	62549897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62550642_62550725_62551194_62555228_62555290_62555482_62555610_62564751
47962	chr5	-	2462	9	NIC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	-2	-18	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	85.6037382361308	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAACAATTGAACCGAGAG	NA	False	NA	NA	False	NA	NA	NA	31117608	31112404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31116847
47964	chr8	+	2326	9	NIC	ENSMUSG00000031813.9	novel	1062	9	NA	NA	-4	-15	intron_retention	FALSE	canonical	3	11	junction_3	131.850056882809	7	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTGGGACCCACTGTGT	NA	False	NA	NA	False	NA	NA	NA	71995561	72000655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71995702_71995776_71995876_71996030_71996128_71996600_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
47965	chr3	-	1526	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	17	1227	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	475	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATGTCTTCAGGAAC	NA	False	NA	NA	False	NA	NA	NA	53771234	53764015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764303_53764430_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
47966	chr10	+	1491	12	NNC	ENSMUSG00000019777.17	novel	906	7	NA	NA	573	2430	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	362.593048758887	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGGAGACAGAGGACAA	NA	False	NA	NA	False	NA	NA	NA	36851138	36874537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_36851332_36861122_36861236_36862302_36862421_36864075_36864151_36865145_36865285_36867752_36867895_36869603_36869697_36869771_36869881_36872984_36873126_36873389_36873499_36873962_36874094_36874409
47968	chr1	+	1366	9	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	6	456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	182.150650218439	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCTGCCTAGCTCATTAC	5619	False	NA	NA	False	NA	NA	NA	34478937	34484051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483349_34483514
47969	chr5	+	1837	11	NIC	ENSMUSG00000029470.16	novel	2702	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	28.3167794778997	2	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTGTCTGTGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	122845629	122867107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122845851_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
47970	chr10	-	2203	7	NNC	ENSMUSG00000034748.17	novel	1891	8	NA	NA	457	-9	intron_retention	FALSE	canonical	2	5	junction_6	85.0757832105523	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTTTACATTTTGTTAC	1823	False	NA	NA	False	NA	NA	NA	81462634	81457629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81461733_81462323_81462452_81462586
47971	chr7	-	296	1	ISM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	10471	0	10384	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTTTTTAACT	NA	False	NA	83	True	NA	NA	NA	139685918	139685622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139685600_139685900
47972	chr8	-	3073	23	NNC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	132.799762272017	1	149	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	73175287	73094838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73095369_73099809_73100011_73112152_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143254_73143312_73145733_73145860_73150083_73150141_73150745_73150842_73153505_73153611_73154035_73154078_73175248
47975	chr17	-	1962	13	NNC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1067.58305362575	1	101	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATAGCTCTGTGCATC	NA	False	NA	NA	False	NA	NA	NA	45906474	45896133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899210_45899313_45899927_45899989_45900133_45900214_45900339_45900541_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
47976	chrX	-	4189	12	NNC	ENSMUSG00000035395.12	novel	4182	12	NA	NA	-12	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.16420440680597	19	50	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATGGTGTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	88453307	88447459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_88450288_88450374_88450515_88450602_88450690_88450915_88451066_88451172_88451245_88451489_88451655_88451746_88451836_88452081_88452154_88452396_88452547_88452638_88452806_88452945_88453058_88453150
47977	chr9	-	661	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239290.2	1392	3	2	729	0	-393	multi-exon	FALSE	canonical	3	1073	junction_1	58.5	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATTGCAAAGGACTATTG	NA	False	NA	NA	False	NA	NA	NA	88404941	88403847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88404029_88404359_88404435_88404536
47978	chr9	-	1268	12	Fusion	ENSMUSG00000031938.16_ENSMUSG00000046111.19	novel	4144	13	NA	NA	987	-3574	multi-exon	FALSE	non_canonical	0	0	junction_1	0	833	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACGTTGGTGGGCGTGGCT	NA	False	NA	-56	True	NA	NA	NA	15228266	15217503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_15217578_15219021_15219116_15219818_15220210_15221152_15221331_15221651_15221706_15222822_15222983_15224062_15224133_15225285_15225327_15225524_15225560_15226396_15226427_15226677_15226734_15228181
47979	chr15	-	1813	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	24	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	608.763718782684	1	87	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTTCGTCCTGTGCT	2785	False	NA	NA	False	NA	NA	NA	77854973	77843203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847516_77848219_77848353_77849102_77849216_77850367_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
47980	chr11	-	2055	10	NNC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	5	37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	62.9550103910192	1	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGTGTATATGTATCTG	NA	False	NA	NA	False	NA	NA	NA	87295327	87269379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87282985_87283028_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
47981	chr2	+	2918	15	FSM	ENSMUSG00000026814.17	ENSMUST00000009705.14	3422	15	-33	537	-33	3	multi-exon	FALSE	canonical	3	154	junction_1	26.1475405640955	115	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCCCTCTGGGTTGTATG	522	False	NA	NA	False	NA	NA	NA	32536573	32572133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32537037_32547527_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
47982	chr2	-	2409	14	FSM	ENSMUSG00000039033.12	ENSMUST00000046656.9	2480	14	69	2	69	-2	multi-exon	FALSE	canonical	3	23	junction_13	23.0823070642491	148	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATGGTGTGTGACTGCTT	NA	False	NA	NA	False	NA	NA	NA	139908611	139675401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908406
47983	chr7	-	1371	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	-144	16	-18	-16	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	840	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCCCAGACTGACCCT	NA	False	NA	NA	False	NA	NA	NA	28466083	28458472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
47984	chr11	+	1546	6	FSM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	22	5	22	-5	multi-exon	TRUE	canonical	3	149	junction_4	4.31740662898458	504	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAATTCTTTTCTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	102080516	102084902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
47985	chr12	-	1640	19	NNC	ENSMUSG00000020974.7	novel	1706	19	NA	NA	10	-8	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_9	95.1567420394139	6	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAAAATGTTCTACACAT	NA	False	NA	NA	False	NA	NA	NA	69274943	69248554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256737_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
47986	chr10	+	1366	11	NIC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	-11	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	206.024658718319	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGAAGTTTGTAAAATGTA	997	False	NA	NA	False	NA	NA	NA	127851053	127865858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127865054_127865154_127865634
47987	chr16	-	2506	16	NNC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	7	0	intron_retention	TRUE	canonical	3	17	junction_1	20.690953471398	93	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8211	False	NA	NA	False	NA	NA	NA	4782049	4759299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4759847_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
47989	chr4	+	1942	2	NNC	ENSMUSG00000034926.4	novel	4028	9	NA	NA	26073	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTAGTCTTTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	106444307	106446304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_106444855_106444909
47990	chr12	+	2060	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	-27	3	-7	2	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	851	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTACAGGCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	99850768	99921475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
47992	chr2	-	1430	3	Genic_Genomic	ENSMUSG00002075873.1	novel	97	1	NA	NA	-223	5351	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAACTGCCTCGCCAATG	5277	False	NA	NA	False	NA	NA	NA	29821758	29816087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_29816113_29816713_29816842_29820481
47993	chr15	-	2301	16	NNC	ENSMUSG00000023169.16	novel	3183	16	NA	NA	394	-266	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	120.117609033813	2	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGGTTTCATAAAT	NA	False	NA	NA	False	NA	NA	NA	96539449	96474133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96539156
47994	chr15	-	947	6	Antisense	novelGene_ENSMUSG00000022551.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	713	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGCCAGCATGCCCAACGC	4828	False	NA	NA	False	NA	NA	NA	76230134	76228578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76228697_76228779_76228907_76229009_76229166_76229248_76229413_76229675_76229776_76229852
47995	chr5	-	1113	3	Intergenic	novelGene_725	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCCTTCTTCCTAAGACA	NA	False	NA	NA	False	NA	NA	NA	67653060	67650713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_67650791_67651940_67652352_67652435
47996	chr6	+	1922	10	NNC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	-15	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	335.18102718927	1	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAACCAACAAGCCTAATT	NA	False	NA	NA	False	NA	NA	NA	113023302	113045196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113023352_113024375_113024666_113026299_113026362_113032613_113033077_113036915_113037047_113040077_113040132_113042504_113042621_113043716_113043828_113044228_113044356_113044677
47997	chr10	+	2948	9	ISM	ENSMUSG00000043259.16	ENSMUST00000173042.9	3310	14	79618	4	79572	1	3prime_fragment	FALSE	canonical	3	19	junction_2	6.9462219947249	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATGTTGAAAGCACA	NA	False	NA	NA	False	NA	NA	NA	70356327	70394562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_70356756_70370513_70370725_70372195_70372335_70378473_70378556_70380157_70380361_70387524_70387621_70388861_70389056_70390317_70390420_70393069
47998	chr14	-	2105	3	FSM	ENSMUSG00000021848.17	ENSMUST00000122009.8	1737	3	122	-490	122	-2	multi-exon	FALSE	canonical	3	33	junction_2	5.5	8	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTTGGGTCTAGTTTA	NA	False	NA	NA	False	NA	NA	NA	48900207	48895137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_48896784_48898755_48898908_48899900
47999	chr2	-	2234	11	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	33	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	218.327391776662	1	104	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAACTCCCCTTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	165740903	165669111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679282_165681876_165681996_165684672_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
48002	chr9	-	1748	8	FSM	ENSMUSG00000011114.19	ENSMUST00000142736.9	1761	8	3	10	3	-10	multi-exon	FALSE	canonical	3	1493	junction_5	98.6130346974724	444	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAGTTTCGGTTATTTGT	NA	False	NA	NA	False	NA	NA	NA	37568530	37560487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564466_37565511_37565733_37566317_37566389_37568293
48004	chr2	-	1463	8	NNC	ENSMUSG00000026727.11	novel	1546	9	NA	NA	29424	45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	158.213882617997	2	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGTGTGCACATTTTTT	NA	False	NA	NA	False	NA	NA	NA	13246608	13081777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_13082419_13174808_13174942_13182151_13182350_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555
48005	chr5	+	1961	7	NIC	ENSMUSG00000029131.15	novel	1024	7	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	922.086522814186	63	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCACCATGTTGTATTTG	4597	False	NA	NA	False	NA	NA	NA	29940988	29962961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29959590_29961231_29961337_29962545
48007	chr2	+	1928	13	Antisense	novelGene_ENSMUSG00000098972.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGCCGCCCCGCTTCGCCC	872	False	NA	NA	False	NA	NA	NA	32573221	32584171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_32573483_32574763_32574829_32575325_32575402_32575730_32575881_32576564_32576658_32576751_32576900_32577157_32577678_32577773_32577847_32577928_32578049_32581203_32581267_32582460_32582515_32582602_32582733_32583996
48008	chr9	-	1467	3	NNC	ENSMUSG00000097195.11	novel	1534	3	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_1	595	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	88404941	88403104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88403731_88403998_88404435_88404536
48009	chr9	+	4179	10	ISM	ENSMUSG00000032076.21	ENSMUST00000085909.9	2126	11	257712	-2300	257596	-51	3prime_fragment	FALSE	canonical	3	105	junction_8	78.429019572548	177	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAGTACTATAAAATAT	1846	False	NA	NA	False	NA	NA	NA	47699266	47764627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
48010	chr15	-	2459	2	FSM	ENSMUSG00000033075.18	ENSMUST00000182611.2	853	2	-383	-1223	-19	589	multi-exon	FALSE	canonical	3	12	junction_1	0	32	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGGTCTTGGTGTCTGTT	6442	False	NA	NA	False	NA	NA	NA	97991151	97985848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_97987685_97990528
48012	chr4	+	2228	18	NNC	ENSMUSG00000028582.15	novel	3303	25	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	67.7169459964528	13	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	3582	False	NA	NA	False	NA	NA	NA	108477185	108491320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481666_108484253_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490721
48014	chr7	-	1796	3	FSM	ENSMUSG00000030493.14	ENSMUST00000141001.2	1690	3	-90	-16	33	16	multi-exon	FALSE	canonical	3	148	junction_1	3.5	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAACTCAAACAATGAACA	NA	False	NA	NA	False	NA	NA	NA	35096228	35091713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35092517_35094399_35094802_35095637
48015	chr5	+	1410	8	NNC	ENSMUSG00000029131.15	novel	1605	8	NA	NA	1	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	696.490356233689	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGGGTCTGCAGCCTT	4631	False	NA	NA	False	NA	NA	NA	29941022	29972087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970611_29971383
48016	chr6	-	1209	9	NNC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	15	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	274.833927126911	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGCAATTGCAGCATACT	NA	False	NA	NA	False	NA	NA	NA	142453654	142435992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_142436156_142436203_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
48017	chr9	+	3146	8	ISM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	32987	10	-315	-10	3prime_fragment	FALSE	canonical	3	24	junction_1	2.71052370871575	46	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACTTGAATTTTGGCCAA	NA	False	NA	NA	False	NA	NA	NA	103912731	103921007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_103913092_103913237_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
48018	chr15	+	1738	7	NIC	ENSMUSG00000022553.17	novel	1743	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	425	junction_1	93.4476977898451	600	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	76235524	76238572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76235860_76236619_76236753_76236845_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
48019	chr10	+	1622	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-17	-652	combination_of_known_splicesites	FALSE	canonical	3	39	junction_5	103.891636921468	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATACAGTTTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	44144336	44239635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44222952_44223071_44238911
48020	chr15	-	1307	6	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	390	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	659.045977151822	310	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACCCTGCCAGCGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	83056403	83037698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038545_83045093_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
48021	chr2	-	3673	2	NNC	ENSMUSG00000066798.4	novel	4535	2	NA	NA	137	-1163	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGGGTTTCTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	37320794	37316677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_37319936_37320379
48022	chr17	+	2064	11	NIC	ENSMUSG00000002372.10	novel	2373	16	NA	NA	4285	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_1	112.157211092288	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	NA	NA	NA	57008019	57018764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57008089_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
48023	chr4	+	2944	9	FSM	ENSMUSG00000028468.16	ENSMUST00000107886.9	5888	9	80	2864	60	1493	multi-exon	FALSE	canonical	1	1	junction_1	1.96452920568771	22	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGTGGTCCCCAGATCT	54	False	NA	NA	False	NA	NA	NA	43578794	43584623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_43579004_43579374_43579510_43579886_43580024_43580295_43580380_43580476_43580627_43580863_43581011_43581187_43581316_43581486_43581677_43582859
48025	chr8	-	2202	10	FSM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	50	1	-49	-1	multi-exon	FALSE	canonical	3	23	junction_4	6.19039478985961	85	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTTTGTAAGTTT	NA	False	NA	NA	False	NA	NA	NA	54092050	54039902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_54040363_54041959_54042135_54052133_54052555_54053985_54054156_54058667_54058835_54060362_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
48026	chr11	-	2990	19	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	1	-861	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	152.413991127318	1	159	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATTTTTTTTGATACTG	NA	False	NA	NA	False	NA	NA	NA	79853192	79825639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828572_79831715_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841672_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
48027	chr1	+	1412	9	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	53	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	333.893672259598	1	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGTTTGTTCTATTCCAT	NA	False	NA	NA	False	NA	NA	NA	15875940	15913655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876159_15883309_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
48028	chr10	-	2264	12	NNC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	30.1971483520388	94	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTTTTGGTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	33827244	33795142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33826689_33826862_33827198
48029	chr2	+	698	4	ISM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	1453	0	1448	0	3prime_fragment	FALSE	canonical	3	1632	junction_3	15.121728296285	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	NA	NA	NA	164613270	164614827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164613300_164613773_164613979_164614086_164614147_164614423
48030	chr13	-	1595	8	Intergenic	novelGene_1471	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.699854212223765	2	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCTGAGGCACATGACC	NA	False	NA	NA	False	NA	NA	NA	74109002	74093979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_74094278_74095794_74095890_74098191_74098322_74099648_74099762_74102660_74102701_74103538_74103640_74105827_74105998_74108354
48032	chr15	+	1565	2	FSM	ENSMUSG00000063236.7	ENSMUST00000231058.2	1646	2	78	3	78	0	multi-exon	FALSE	canonical	3	288	junction_1	0	16	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	NA	False	NA	NA	NA	76832806	76834929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76833891_76834448
48033	chrX	+	1213	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-27	68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068782	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069024_13069115
48035	chr11	+	1179	7	ISM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	28090	2807	27851	-2807	3prime_fragment	FALSE	canonical	3	928	junction_1	43.3644119321619	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATATTCTAAATATCT	NA	False	NA	NA	False	NA	NA	NA	102947261	102956931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
48036	chr16	-	1370	12	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	1	64	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	536.561658361032	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACGTCATTTGATTTTG	9196	False	NA	NA	False	NA	NA	NA	91525495	91486349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489486_91489593_91492116_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
48037	chrX	+	1270	7	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	-4	-127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	142.106767373455	12	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAATGTGGGTATCCGCT	NA	False	NA	NA	False	NA	NA	NA	99537956	99559604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99538163_99538510_99538805_99546600_99546669_99546729_99546797_99548795_99548876_99549545_99549659_99559162
48038	chr7	+	2171	3	NIC	ENSMUSG00000033429.11	novel	828	3	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	88	69	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	NA	False	NA	NA	NA	64042521	64061869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_64042592_64048440_64050255_64061582
48039	chr5	-	844	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	180	1702	0	-1546	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCACTGTCCTCCTT	2217	False	NA	NA	False	NA	NA	NA	134668164	134650276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
48040	chr6	-	3352	10	NNC	ENSMUSG00000029826.15	novel	3400	9	NA	NA	-930	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	32.0269947866129	1	172	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCGAAAACTTTGCAGTTG	9394	False	NA	NA	False	NA	NA	NA	38332468	38292611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38293359_38296638_38296752_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849_38331459_38332419
48042	chr2	+	1488	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	47	6	-1	-6	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	2	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCATGTCTCCCGAGGTC	8594	False	NA	NA	False	NA	NA	NA	61542084	61630714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
48044	chr13	+	1738	5	NIC	ENSMUSG00000021537.10	novel	1226	5	NA	NA	3	-11	intron_retention	FALSE	canonical	1	2	junction_2	662.116067997145	31	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAACATCAAATCATGT	NA	False	NA	NA	False	NA	NA	NA	81931952	81945024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_81932896_81934961_81935077_81938289_81938526_81940074_81940267_81944772
48046	chrX	+	1873	2	Genic_Genomic	ENSMUSG00000051582.3	novel	873	1	NA	NA	-105	1360	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAATACCTGGTTTGCAT	NA	False	NA	NA	False	NA	NA	NA	99472513	99474851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_99473174_99473638
48047	chr5	-	1648	4	FSM	ENSMUSG00000029422.16	ENSMUST00000182985.2	572	4	-255	-821	-255	0	multi-exon	FALSE	canonical	3	495	junction_2	18.8325958557674	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	8022	False	NA	NA	False	NA	NA	NA	123872012	123866488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618
48048	chr3	-	1410	3	NNC	ENSMUSG00000027944.14	novel	837	2	NA	NA	10	-414	intron_retention	FALSE	non_canonical	0	0	junction_1	896.5	1	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTACAGTTGGATGATAC	7231	False	NA	NA	False	NA	NA	NA	89905963	89903614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903706_89904120_89905311_89905834
48049	chr16	+	1949	9	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-8	38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	309.979207972083	1	86	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	NA	False	NA	NA	False	NA	NA	NA	38383214	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383410_38384476_38384685_38393456_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
48050	chr9	+	2919	13	FSM	ENSMUSG00000032598.9	ENSMUST00000035218.9	3360	13	50	391	-3	-391	multi-exon	FALSE	canonical	3	52	junction_4	11.5551215196264	64	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGCTTCCCTGTATGAT	3200	False	NA	NA	False	NA	NA	NA	108685616	108695652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108685854_108688244_108688355_108688747_108688953_108689077_108689169_108689417_108689909_108691147_108691319_108691463_108691551_108691628_108691768_108691865_108691947_108692126_108692256_108692358_108692452_108692545_108692719_108694740
48051	chr6	+	2093	16	NIC	ENSMUSG00000029802.14	novel	600	5	NA	NA	-15	57	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	43.6165106353087	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCACTTTGATTACCATAT	NA	False	NA	NA	False	NA	NA	NA	58572944	58669417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_58573003_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
48053	chr7	-	1790	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	108	1	108	-1	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	448	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGCTTCCTTCGTCTCT	9790	False	NA	NA	False	NA	NA	NA	25358298	25329371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
48054	chr11	-	1821	15	NNC	ENSMUSG00000054079.13	novel	2613	14	NA	NA	-15	-706	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	226.737013893603	7	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTACATGATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	93776607	93750774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159_93776238_93776338
48055	chr9	-	2666	19	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	0	-157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	160.436489876682	1	108	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGAATTTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	114469252	114415190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427779_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447051_114448287_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
48057	chr2	+	1822	1	NIC	ENSMUSG00000027509.12	novel	1742	12	NA	NA	-1431	-767	mono-exon	FALSE	NA	NA	NA	NA	NA	2	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCAGCATTGAGGGGAGA	NA	False	NA	NA	False	NA	NA	NA	172852025	172853847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_172852000_172853800
48059	chr10	+	2304	14	FSM	ENSMUSG00000032763.12	ENSMUST00000218215.2	2331	14	37	-10	9	0	multi-exon	FALSE	canonical	3	132	junction_8	17.1491887433841	236	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5931	False	NA	NA	False	NA	NA	NA	78410865	78420336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711
48060	chr1	+	4023	28	NNC	ENSMUSG00000056763.17	novel	1074	10	NA	NA	1	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	48.1605112332672	1	146	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTTTTATTAACTACCA	NA	False	NA	NA	False	NA	NA	NA	10110002	10206979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_10110105_10115300_10115409_10117648_10117752_10128944_10129049_10134546_10134639_10135547_10135647_10136650_10137046_10145084_10145172_10147396_10147468_10152477_10152572_10153725_10153784_10155971_10156178_10158275_10158410_10159106_10159186_10160412_10160543_10166090_10166239_10174436_10174556_10183105_10183248_10183827_10183933_10186242_10186310_10186838_10186957_10196564_10196705_10197647_10197789_10200210_10200258_10202678_10202743_10203388_10203499_10204316_10204456_10206158
48061	chr1	-	1989	2	ISM	ENSMUSG00000098234.8	ENSMUST00000182580.8	473	4	-3	7	-3	-7	intron_retention	FALSE	canonical	3	538	junction_1	0	46	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGAGCTGCGGACTTTT	NA	False	NA	NA	False	NA	NA	NA	10014346	10012190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_10012381_10012547
48062	chr7	-	1461	8	Antisense	novelGene_ENSMUSG00000033685.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	339	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGCGAACCCGCGCCTAC	NA	False	NA	NA	False	NA	NA	NA	100148832	100142564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100142671_100143418_100143581_100145930_100146150_100146408_100146513_100147282_100147478_100147552_100147654_100147939_100148123_100148441
48064	chr11	+	1387	9	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	932.389931506663	45	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	NA	False	NA	NA	NA	9068548	9086170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068835_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
48065	chr19	+	1899	3	NNC	ENSMUSG00000095913.2	novel	663	4	NA	NA	-584	-2056	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTGTGGGCTGACGGG	NA	False	NA	NA	False	NA	NA	NA	4850955	4853756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4851831_4852575_4853445_4853601
48066	chr5	+	2121	11	FSM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	33	597	-4	-597	multi-exon	FALSE	canonical	3	226	junction_7	29.6310647800581	45	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGTCCGGATGCGGGTA	NA	False	NA	NA	False	NA	NA	NA	122560539	122582378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352_122579504_122581866
48067	chr10	+	1237	10	NIC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	-29	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_4	1258.51238853607	4896	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2092	False	NA	NA	False	NA	NA	NA	61484370	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
48068	chr11	+	1478	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	35	391	-9	49	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTTTCATGGTGTA	NA	False	NA	NA	False	NA	NA	NA	107370344	107388608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
48070	chr10	-	1737	15	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-9	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1106.88786234014	1	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899677	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887164_116888912_116889063_116889944_116890045_116890781_116890886_116891011_116891128_116891934_116892065_116893075_116893183_116893695_116893824_116894002_116894104_116896552_116896745_116897409_116897483_116897967_116898042_116898721_116898788_116898880_116898956_116899610
48071	chr5	-	2872	7	NNC	ENSMUSG00000047881.15	novel	3241	7	NA	NA	93	-11	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	223.917891697431	1	145	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGCTTGAATGAGCGAC	NA	False	NA	NA	False	NA	NA	NA	64126073	64066418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_64068495_64082077_64082217_64084339_64084554_64087820_64087879_64093365_64093438_64095148_64095377_64125988
48072	chr17	-	1798	3	Genic_Genomic	ENSMUSG00000117050.2	novel	1046	1	NA	NA	-6214	-372	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	44	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCTCGGCTGCTGCAG	NA	False	NA	NA	False	NA	NA	NA	29319649	29312761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_29312834_29317417_29317810_29318315
48073	chr11	-	1221	4	NIC	ENSMUSG00000020460.16	novel	928	5	NA	NA	3	-15	intron_retention	FALSE	canonical	3	7569	junction_3	4108.24983011825	279	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGGAACTCGTACTTAG	NA	False	NA	NA	False	NA	NA	NA	29497857	29495860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_29496030_29496290_29497261_29497680_29497746_29497840
48074	chr9	+	2523	7	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	163.356886056947	1	120	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCTTGTGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	20927276	20940106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20927398_20930214_20930476_20936839_20937155_20937616_20937896_20938373_20938632_20938727_20938977_20939066
48075	chr1	+	2439	11	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	209.094739292982	20	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCATTCGCCCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	42890436	42944837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42936529_42937769_42938600_42938710_42942454_42942625_42944564
48076	chr15	+	3821	7	NNC	ENSMUSG00000078954.10	novel	2446	7	NA	NA	-7	1357	intron_retention	FALSE	non_canonical	0	0	junction_1	75.7781850754776	15	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGCACCAGATATGT	NA	False	NA	NA	False	NA	NA	NA	84604276	84644458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84604314_84617090_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220
48077	chr9	+	654	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	-53	-121	-53	121	mono-exon	FALSE	NA	NA	NA	NA	NA	24	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	-3	True	NA	NA	False	NA	NA	NA	7751672	7752326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_7751700_7752300
48078	chr17	+	2090	3	NIC	ENSMUSG00000024422.15	novel	462	4	NA	NA	24	691	intron_retention	FALSE	canonical	3	1016	junction_2	92	3	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGCACTCAGAAGGCAGA	7412	False	NA	NA	False	NA	NA	NA	36198857	36201177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36199095_36199246_36200253_36200330
48080	chr12	+	3640	18	NNC	ENSMUSG00000052632.17	novel	3345	27	NA	NA	106237	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	19.7527975330236	29	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGGACATGGTTCATCT	NA	False	NA	NA	False	NA	NA	NA	21268191	21320164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21268259_21274305_21274394_21279239_21279289_21279374_21279542_21280823_21280958_21289555_21289651_21294686_21294877_21297288_21297375_21299302_21299419_21301139_21301208_21302741_21302856_21304215_21304469_21308010_21308177_21315131_21315182_21315463_21315535_21315888_21316012_21317718_21318853_21319495
48081	chr10	+	2076	9	FSM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	309	482	309	0	multi-exon	FALSE	canonical	3	53	junction_2	7.56534037568701	200	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTTTATCTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	39489238	39530821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
48083	chr5	-	2722	2	Antisense	novelGene_ENSMUSG00000029504.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCCCGACCCTGAA	2239	False	NA	NA	False	NA	NA	NA	110807885	110804968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_110805250_110805444
48085	chr7	-	1990	10	FSM	ENSMUSG00000060601.14	ENSMUST00000073488.12	1999	10	9	0	8	0	multi-exon	TRUE	canonical	0	0	junction_9	207.457626195488	335	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGCCCAGTGTGGAG	NA	False	NA	NA	False	NA	NA	NA	44203364	44199039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202179_44203002_44203133_44203232
48086	chr3	+	757	1	Genic_Genomic	ENSMUSG00000027985.15	novel	NA	NA	NA	NA	-146	-6306	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCAAGTCGTGTCCCCT	NA	False	NA	NA	False	NA	NA	NA	130903973	130904730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_130904000_130904700
48088	chr11	+	1955	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	41	2131	41	-2131	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCCTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	54988981	55001724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
48089	chr13	-	917	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	0	at_least_one_novel_splicesite	FALSE	canonical	3	219	junction_3	475.847547948804	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTCTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	100881584	100872462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881238
48091	chr1	+	4284	6	NNC	ENSMUSG00000025969.16	novel	6708	16	NA	NA	67536	-5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	8.47584804016684	10	77	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACATCTGGGTTTTTTT	268	False	NA	NA	False	NA	NA	NA	62810396	62838468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_62810558_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62834867
48094	chr12	-	3723	17	FSM	ENSMUSG00000021003.11	ENSMUST00000021390.9	3832	17	107	2	-5	-2	multi-exon	FALSE	canonical	3	22	junction_3	6.15648793956424	62	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTTTGAGAATTTGCATT	NA	False	NA	NA	False	NA	NA	NA	98225611	98168554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98225393
48095	chr5	-	1190	7	NNC	ENSMUSG00000087601.4	novel	1685	5	NA	NA	-8908	-20465	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGCCGAAAAAACAGCCGG	NA	False	NA	NA	False	NA	NA	NA	66842749	66833599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_66833676_66834287_66834414_66837003_66837156_66839783_66839869_66839949_66839999_66841030_66841095_66842111
48096	chrX	-	3312	8	ISM	ENSMUSG00000031150.14	ENSMUST00000033490.13	3658	10	3151	0	2017	0	3prime_fragment	TRUE	canonical	3	22	junction_6	7.55658923167897	48	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATTGAGTCTCTGTCTG	959	False	NA	NA	False	NA	NA	NA	7604429	7597952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_7600338_7601310_7601410_7601539_7601715_7602012_7602076_7602930_7603217_7603537_7603679_7604132_7604267_7604400
48097	chrX	+	3562	18	ISM	ENSMUSG00000041229.16	ENSMUST00000168501.8	6359	22	527	33481	12	-10	5prime_fragment	FALSE	canonical	2	12	junction_1	21.3705161832305	2	84	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATGTAGGTAACAATAAT	NA	False	NA	NA	False	NA	NA	NA	150304194	150383372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150304434_150305383_150305573_150330390_150330477_150330810_150330920_150333826_150333988_150335481_150335624_150337129_150337317_150338968_150339132_150348367_150348456_150348954_150349062_150350647_150350740_150353337_150353428_150355361_150355665_150356408_150356513_150380296_150380476_150380895_150380982_150381498_150381633_150382269
48098	chr4	-	3047	6	FSM	ENSMUSG00000043085.15	ENSMUST00000053263.9	1671	6	234	-1610	-23	753	multi-exon	FALSE	canonical	3	57	junction_2	22.4535075210979	157	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGCACACACACCACAGCCT	NA	False	NA	NA	False	NA	NA	NA	141345315	141339933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141342018_141342255_141342447_141343514_141343933_141344605_141344781_141344950_141345024_141345209
48099	chr14	+	3727	4	ISM	ENSMUSG00000036282.16	ENSMUST00000153488.9	4446	5	950	7	-129	-7	3prime_fragment	FALSE	canonical	3	313	junction_3	7.58653778449403	173	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTAAGATACAGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	49410632	49428335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_49410851_49415508_49415633_49418162_49418219_49425006
48100	chr5	+	1640	10	NIC	ENSMUSG00000029199.12	novel	1668	11	NA	NA	0	-32	intron_retention	FALSE	canonical	3	315	junction_9	31.8398771633588	406	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTTCTTTTCTTAAAA	6953	False	NA	NA	False	NA	NA	NA	65548906	65566518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
48102	chr5	+	2582	6	NNC	ENSMUSG00000045294.12	novel	2697	5	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	470.18319833869	479	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTATTCCTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	28276375	28283660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_28276480_28276579_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
48103	chr3	+	2954	1	NIC	ENSMUSG00000027533.11	novel	987	4	NA	NA	-14	-791	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACTGAAGGATGGGAAG	NA	False	NA	NA	False	NA	NA	NA	10077650	10080604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_10077600_10080600
48104	chr11	+	911	4	Antisense	novelGene_ENSMUSG00000020738.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCCCTCCCCCCGCCCTG	1141	False	NA	NA	False	NA	NA	NA	115413968	115427083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115414596_115421171_115421243_115425376_115425512_115427005
48105	chr4	+	1621	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	-2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	794.986041107362	4	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGTATCCCTGTTGTG	2996	False	NA	NA	False	NA	NA	NA	128887143	128905313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892950_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
48106	chr11	-	1869	21	NNC	ENSMUSG00000018340.14	novel	2489	26	NA	NA	0	5874	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	136.4148085803	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTACCGGGCACCCGGG	NA	False	NA	NA	False	NA	NA	NA	54924271	54875901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887319_54892020_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
48107	chr1	-	2483	13	FSM	ENSMUSG00000033684.15	ENSMUST00000194632.2	2433	13	-50	0	-5	0	multi-exon	FALSE	canonical	3	21	junction_7	5.99247212944893	82	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGAACGTGTTTGACTTG	NA	False	NA	NA	False	NA	NA	NA	155688640	155653907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
48109	chr6	-	3657	22	NNC	ENSMUSG00000030138.9	novel	4345	23	NA	NA	0	-968	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	154.434804508367	1	201	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAAGGCTCTGCCATTT	8355	False	NA	NA	False	NA	NA	NA	118396365	118361309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369944_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385130_118388468_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396244
48110	chr1	+	3295	1	NIC	ENSMUSG00000026280.18	novel	4173	13	NA	NA	-43	-131	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCTTCCAGAATTCTCCA	NA	False	NA	NA	False	NA	NA	NA	93712475	93715770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93712500_93715800
48111	chr13	+	3102	2	ISM	ENSMUSG00000021763.18	ENSMUST00000078163.14	3546	6	23649	12	14594	-12	intron_retention	FALSE	canonical	3	29	junction_1	0	54	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTGGGCTACACATGG	NA	False	NA	NA	False	NA	NA	NA	113502730	113507034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_113502802_113504003
48112	chr11	-	2594	12	ISM	ENSMUSG00000002814.16	ENSMUST00000102668.10	3542	18	20953	5	-3634	-5	3prime_fragment	FALSE	canonical	3	121	junction_7	19.5452431278206	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCCAAAGCTAAGTAGATC	NA	False	NA	NA	False	NA	NA	NA	60647138	60632721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103
48113	chr18	-	1589	10	NNC	ENSMUSG00000024539.18	novel	1568	10	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	173.963242889247	48	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGACTATGTTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	67857646	67798588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_67798945_67805696_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
48114	chr7	+	2579	14	Antisense	novelGene_ENSMUSG00000030718.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	404	10	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGGCAATGCATGCTGG	NA	False	NA	NA	False	NA	NA	NA	99975945	100021319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99977090_99978241_99978307_99981058_99981129_99983133_99983178_99984252_99984387_99987577_99987699_99990235_99990307_99991054_99991140_99994155_99994314_99997011_99997063_99997327_99997386_100003914_100004009_100004474_100004569_100020929
48116	chr6	+	2118	10	Antisense	novelGene_ENSMUSG00000061838.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	82	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTAGGGAGAGAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	95451114	95632577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_95452145_95474576_95474696_95543361_95543510_95546554_95546715_95556119_95556216_95563919_95564014_95565921_95566074_95571642_95571732_95572634_95572741_95632453
48117	chr7	-	4584	25	NNC	ENSMUSG00000031075.20	novel	4585	25	NA	NA	10	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	7.1820329449413	16	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAACCCTGGTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	144292319	144142292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_144144003_144146437_144146544_144149178_144149364_144150917_144150971_144157177_144157331_144161654_144161801_144162586_144162688_144164579_144164638_144165071_144165184_144165350_144165553_144168586_144168662_144172585_144172660_144175394_144175488_144187332_144187494_144190811_144190947_144192236_144192302_144198444_144198487_144201760_144201817_144204239_144204292_144207940_144207996_144209335_144209488_144210751_144210851_144223079_144223413_144232370_144232517_144292099
48118	chr3	-	777	3	ISM	ENSMUSG00000040374.14	ENSMUST00000195855.6	1587	4	1	2213	1	-2209	5prime_fragment	FALSE	canonical	3	60	junction_1	2	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAGGAAAATAGATCAAGT	NA	False	NA	NA	False	NA	NA	NA	5641204	5627772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_5628333_5628679_5628790_5641097
48119	chr12	+	3996	1	Intergenic	novelGene_4483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGAGGCAGTTTGTTTC	8222	False	NA	NA	False	NA	NA	NA	112793304	112797300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_112793300_112797300
48121	chr5	+	1097	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	213	-22	-213	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	11	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCGGTCTGGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
48122	chrX	+	1617	6	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-1610	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1093.47270656382	1	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74147944	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150842_74151784_74151911_74152301
48123	chr10	-	2026	11	NIC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	2	-1004	intron_retention	FALSE	canonical	3	1853	junction_10	120.792549439111	1	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCACCCACCCACTCC	8694	False	NA	NA	False	NA	NA	NA	128401854	128394640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
48125	chr5	+	1019	8	NNC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	178.588113506231	34	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGGTTTTTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	66833585	66844574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_66833675_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
48126	chr9	-	1802	5	ISM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	9177	11	-963	-6	intron_retention	FALSE	canonical	3	1061	junction_1	65.4002102443104	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGCAACCACCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	54632604	54624453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334
48127	chr2	-	1839	10	FSM	ENSMUSG00000002109.15	ENSMUST00000028696.5	1557	10	26	-308	4	24	multi-exon	FALSE	canonical	3	56	junction_8	17.7888854188351	232	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTACTGACCTGGTAAGA	3023	False	NA	NA	False	NA	NA	NA	91067301	91041892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
48128	chr2	+	2400	11	NIC	ENSMUSG00000038963.16	novel	3002	13	NA	NA	2963	-388	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	28.2233945513292	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTCTGAAAGGGGGTCA	5892	False	NA	NA	False	NA	NA	NA	180105734	180116250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180106622_180107389_180107481_180107997_180108101_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114895_180114961_180115306_180115456_180115896
48129	chr2	+	1540	8	Antisense	novelGene_ENSMUSG00000026878.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGCCGGAGGTTGCAGA	4685	False	NA	NA	False	NA	NA	NA	35071522	35090896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_35072459_35073403_35073435_35073754_35073840_35076681_35076753_35079911_35080090_35081523_35081577_35082631_35082695_35090773
48130	chr3	+	3786	2	ISM	ENSMUSG00000044167.7	ENSMUST00000053764.7	8665	3	76983	3512	76983	-3512	3prime_fragment	FALSE	canonical	3	61	junction_1	0	42	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTTCAATTTGAACTTG	NA	False	NA	NA	False	NA	NA	NA	52252739	52257130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_52253812_52254416
48131	chr19	+	1936	15	Antisense	novelGene_ENSMUSG00000041360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	89	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGAAAAACAAAAGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	27367486	27404528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_27367723_27371662_27371736_27373705_27373783_27376281_27376507_27377080_27377221_27389580_27389654_27394103_27394273_27397437_27397522_27398696_27398872_27399754_27399821_27400052_27400150_27400907_27400982_27401608_27401745_27403195_27403415_27404436
48133	chr14	+	1573	1	Intergenic	novelGene_612	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACAGATCCCTGGCTTCT	NA	False	NA	NA	False	NA	NA	NA	75610782	75612355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_75610800_75612400
48134	chr11	-	2868	1	Intergenic	novelGene_2451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGTTTTTTTTTTTTTTT	7831	False	NA	NA	False	NA	NA	NA	88869258	88866390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_88866400_88869300
48135	chrX	-	897	8	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	-15	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5653.19430381927	25	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232957	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230035_101230068_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
48136	chr18	-	1580	2	Genic_Genomic	ENSMUSG00000043424.11	novel	2379	1	NA	NA	112	-611	multi-exon	FALSE	canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTTTGTGTTATATCC	NA	False	NA	NA	False	NA	NA	NA	43610749	43609093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_43610580_43610655
48139	chr19	-	1845	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1025.85366890215	1	75	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCTCATGAGATTGTG	NA	False	NA	NA	False	NA	NA	NA	8691236	8684943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686767_8686909_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
48140	chr2	-	3684	4	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	78	-99	intron_retention	FALSE	canonical	3	182	junction_3	33.9247533357118	1	212	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAATAAACAATGCAGGC	NA	False	NA	NA	False	NA	NA	NA	106804664	106792970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804616
48142	chr5	+	2898	5	FSM	ENSMUSG00000007987.13	ENSMUST00000200157.5	3071	5	10	163	10	-163	multi-exon	FALSE	canonical	3	57	junction_4	11.0989864402116	281	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCCTCCAATCCCCCA	4065	False	NA	NA	False	NA	NA	NA	136937013	136944095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542_136940746_136941678
48143	chr17	-	1701	13	ISM	ENSMUSG00000024081.10	ENSMUST00000233484.2	2920	16	5152	6	5148	-6	3prime_fragment	FALSE	canonical	3	573	junction_9	40.5020575609026	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTACCCTTAGTTTTTGC	NA	False	NA	NA	False	NA	NA	NA	79239318	79227279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738
48144	chr3	+	1888	5	NIC	ENSMUSG00000037661.15	novel	346	4	NA	NA	10	-1	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	111.904814463007	209	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCATTTTATTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	30910108	30951338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_30910207_30931383_30931482_30944090_30944191_30948277_30948390_30949858
48146	chr5	+	5989	19	NIC	ENSMUSG00000033209.18	novel	10688	23	NA	NA	-124838	-4135	combination_of_known_splicesites	TRUE	canonical	1	3	junction_2	3.93190495093789	6	108	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACCCCCAGGAGCTGGC	NA	False	NA	NA	False	NA	NA	NA	111248485	111433510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_111248833_111249835_111249967_111330789_111331298_111370975_111372318_111373423_111373948_111377213_111377324_111378915_111379046_111381111_111381331_111383341_111383508_111414400_111414542_111419060_111419206_111424027_111424208_111424649_111425371_111426341_111426467_111427824_111428057_111428540_111428618_111430636_111430767_111431810_111431919_111432857
48147	chr6	-	2238	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5542	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	64.6896436842869	1	30	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAGGCGGACTTTGCTTT	2826	False	NA	NA	False	NA	NA	NA	83674983	83669784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672627_83672710_83673859_83674743
48148	chr15	+	1593	7	FSM	ENSMUSG00000023051.12	ENSMUST00000131184.8	1819	7	225	1	-10	-1	multi-exon	FALSE	canonical	3	28	junction_2	131.824904913888	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCCCTTGTTCTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	102426851	102432108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102427038_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
48149	chr11	-	1265	6	ISM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	245	11	0	-11	intron_retention	FALSE	canonical	3	796	junction_5	117.761453795374	3194	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACTAATGAGAACGTGTT	NA	False	NA	NA	False	NA	NA	NA	117716673	117706362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426
48150	chr19	+	1620	3	FSM	ENSMUSG00000035372.3	ENSMUST00000235295.2	1643	3	20	3	-4	2	multi-exon	FALSE	canonical	2	4	junction_1	146.5	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCCAGCTTGTGTGGGTC	NA	False	NA	NA	False	NA	NA	NA	3758366	3767875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_3758437_3765637_3765803_3766490
48151	chr4	-	3774	5	ISM	ENSMUSG00000044700.16	ENSMUST00000105687.9	3697	11	14261	10	6904	-2	3prime_fragment	FALSE	canonical	3	194	junction_3	9.36416040016402	102	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTTGTATCAGGCTGTG	NA	False	NA	NA	False	NA	NA	NA	149808240	149799841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_149801535_149802476_149802615_149803107_149803402_149803968_149804041_149806663
48152	chr5	-	2314	6	NNC	ENSMUSG00000001687.16	novel	2064	6	NA	NA	8	-39	intron_retention	FALSE	non_canonical	0	0	junction_5	164.955024173258	198	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTCTGTAAACTAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	148489591	148441483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762_148489232_148489534
48153	chrX	-	2665	4	Antisense	novelGene_ENSMUSG00000072964.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	64	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCATCACACCCAGCAGC	NA	False	NA	NA	False	NA	NA	NA	134700627	134697296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_134698612_134698769_134698900_134699133_134699221_134699494
48154	chr8	-	1292	5	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	27	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1129.72408135792	5	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTGTGTCCTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	108315063	108307013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307866_108311490_108311593_108312336_108312430_108313256_108313349_108314910
48155	chr3	+	1758	4	ISM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	253	12105	253	-12027	intron_retention	FALSE	canonical	3	2811	junction_2	254.721198350057	27	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGAAGAAGATGCAGATC	NA	False	NA	NA	False	NA	NA	NA	108164494	108175185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748
48156	chr6	-	1144	6	NNC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_3	540.321015693449	7247	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	NA	False	NA	NA	NA	124689102	124681344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124681622_124681901_124682052_124682120_124682180_124682327_124682620_124682703_124682806_124688838
48158	chr7	-	2772	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	53	12	-18	-12	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	245	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGACATTTATGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	126613740	126586043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
48159	chr14	-	1552	8	NNC	ENSMUSG00000060373.16	novel	1301	8	NA	NA	22	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1551.03778293168	1	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAAGGAAAGACAATTTT	8806	False	NA	NA	False	NA	NA	NA	52341404	52311906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312571_52312742_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341343
48161	chr7	+	1265	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	-36	0	-36	0	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3804	False	NA	NA	False	NA	NA	NA	140972075	140982881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
48163	chr2	+	1363	3	ISM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	23071	214	23071	-214	3prime_fragment	FALSE	canonical	3	1386	junction_1	62	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGGGGCCTGGTAGGAT	NA	False	NA	NA	False	NA	NA	NA	143780310	143785030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_143780613_143781871_143781949_143784046
48164	chr11	+	1761	9	NIC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	72.0831767821036	13	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	5049410	5056093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_5049478_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
48165	chrX	-	1357	4	NNC	ENSMUSG00000031059.10	novel	908	3	NA	NA	-581	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1070.67206308312	10933	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	20484439	20481564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_20481782_20481952_20482084_20483298_20483805_20483936
48167	chr1	-	907	2	FSM	ENSMUSG00000048495.17	ENSMUST00000162663.2	478	2	-273	-156	-273	-9	multi-exon	FALSE	canonical	3	123	junction_1	0	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACATAAAGTCTATTGGTG	NA	False	NA	NA	False	NA	NA	NA	57430203	57427407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_57427912_57429800
48169	chr8	+	2340	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	213	-7	2	7	multi-exon	FALSE	canonical	3	198	junction_1	0	1366	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTTATGTATGTCAGT	NA	False	NA	NA	False	NA	NA	NA	3726511	3731262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_3726604_3729014
48170	chr9	-	868	6	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	18	95097	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88058.706154474	22	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACGATGGCCCACAGCTC	NA	False	NA	NA	False	NA	NA	NA	78275441	78179236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78179394_78179509_78179657_78180081_78180196_78274484_78274577_78275002_78275186_78275266
48171	chr11	+	1462	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	39	9	18	-9	multi-exon	FALSE	canonical	3	128	junction_1	6.53197264742181	291	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTTTACCCATATGAGT	589	False	NA	NA	False	NA	NA	NA	76134579	76141436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
48172	chr5	+	813	5	NNC	ENSMUSG00000034173.14	novel	2492	4	NA	NA	-14564	-1328	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1974.97093333041	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGACTTGTCCCTCTGCT	1392	False	NA	NA	False	NA	NA	NA	129909999	129929338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129910236_129911267_129911420_129912773_129912939_129928166_129928274_129929185
48173	chr7	-	1310	1	Antisense	novelGene_ENSMUSG00000058454.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGGGGTGGAGAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	143402144	143400834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_143400800_143402100
48174	chr5	+	4809	4	FSM	ENSMUSG00000034981.10	ENSMUST00000040576.10	5068	4	108	151	108	-151	multi-exon	FALSE	canonical	2	9	junction_1	0.816496580927726	38	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTAGCTGTGGTGATTCA	NA	False	NA	NA	False	NA	NA	NA	91665581	91774602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_91665817_91741676_91742361_91760856_91760936_91770791
48175	chr15	-	783	5	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	17	3556	17	-11	5prime_fragment	FALSE	canonical	3	5733	junction_1	302.21060537314	22	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACCCACAGATGCCGA	NA	False	NA	NA	False	NA	NA	NA	31601933	31594501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
48177	chr10	+	1706	6	ISM	ENSMUSG00000035873.9	ENSMUST00000095313.5	1745	7	1064	-586	368	586	3prime_fragment	FALSE	canonical	3	675	junction_4	49.1634010214916	388	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAATATCCTTGGTATTT	6662	False	NA	NA	False	NA	NA	NA	108169045	108250687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_108169173_108218590_108218723_108227558_108227594_108245323_108245472_108247824_108247930_108249528
48178	chr1	+	1492	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	216	129	2	-125	multi-exon	FALSE	canonical	3	291	junction_1	53.3666562565053	4	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTATCTCAGGCC	8187	False	NA	NA	False	NA	NA	NA	134333734	134339349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
48179	chr3	+	1125	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	15	909	15	-56	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACCAATGGGTCGGAAATC	NA	False	NA	NA	False	NA	NA	NA	121220160	121250947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
48180	chr17	-	1907	4	FSM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	-30	1	-30	-1	multi-exon	FALSE	canonical	3	103	junction_2	20.5101600838869	106	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTCTCTCATTTCTCT	NA	False	NA	NA	False	NA	NA	NA	36289893	36283433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602
48181	chr6	-	1789	5	FSM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	18	0	15	0	multi-exon	FALSE	canonical	3	30	junction_1	5.31507290636732	239	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	NA	False	NA	NA	NA	83010434	83007914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83009042_83009211_83009397_83009515_83009610_83009747_83010048_83010351
48182	chr1	-	1724	11	NNC	ENSMUSG00000006299.14	novel	1817	11	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	386.93390908526	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	74323848	74319004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_74319469_74319941_74320070_74320258_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
48183	chr7	-	3476	4	NIC	ENSMUSG00000092490.8	novel	825	5	NA	NA	33	2142	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	14.6969384566991	3	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTTACAAAGATGCAACAAA	NA	False	NA	NA	False	NA	NA	NA	8865817	8856703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_8859771_8861801_8861928_8863073_8863113_8865573
48184	chr11	+	2743	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	35	0	3	0	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	133	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	243	False	NA	NA	False	NA	NA	NA	120348975	120355184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
48186	chr8	+	2411	11	NNC	ENSMUSG00000015016.9	novel	2171	10	NA	NA	-27	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.9469060343604	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCTTCTCTGACTGTGAC	9580	False	NA	NA	False	NA	NA	NA	123502289	123544607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_123502368_123504815_123505041_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
48187	chr1	+	2458	21	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	97	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	150.652547273519	1	141	15	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGAAGTCTCAT	419	False	NA	NA	False	NA	NA	NA	72346682	72434112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422619_72422860_72422929_72433054_72433127_72433866
48189	chr16	+	1452	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	-504	2	-504	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	5964	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTTCTCCATTGTCATT	400	False	NA	NA	False	NA	NA	NA	20535910	20541015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
48190	chr10	+	1659	7	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	220	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1805.48109931951	1	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCACTCCTGAATTAG	1123	False	NA	NA	False	NA	NA	NA	127895099	127913125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127895156_127904573_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910164_127911935
48191	chr14	+	5282	1	NIC	ENSMUSG00000022010.20	novel	2278	5	NA	NA	-1441	-22	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	25	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAAAAATGCACTTACT	2102	False	NA	NA	False	NA	NA	NA	76673764	76679046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_76673800_76679000
48192	chr1	-	3816	12	FSM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	39	-2011	1	-5	multi-exon	FALSE	canonical	3	28	junction_1	6.62077871128477	39	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTCCATGTCTTCTATT	NA	False	NA	NA	False	NA	NA	NA	191822320	191783075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
48193	chr4	-	1066	1	Antisense	novelGene_ENSMUSG00000028567.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACGGTGGTAGTTGCACAG	NA	False	NA	NA	False	NA	NA	NA	108693026	108691960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108692000_108693000
48194	chr7	-	1444	9	NIC	ENSMUSG00000030697.8	novel	1359	9	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	867.36281336013	2881	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5044	False	NA	NA	False	NA	NA	NA	126391694	126385037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388307_126391232_126391396_126391594
48196	chr7	+	1549	3	FSM	ENSMUSG00000011267.9	ENSMUST00000108453.2	1530	3	-19	0	-19	0	multi-exon	FALSE	canonical	3	235	junction_1	5.5	1104	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGACTTTCTTGGGGT	708	False	NA	NA	False	NA	NA	NA	19311192	19314581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_19311554_19311741_19311886_19313537
48197	chr10	+	911	6	NIC	ENSMUSG00000075706.12	novel	959	7	NA	NA	161	-10	intron_retention	FALSE	canonical	3	7423	junction_4	812.745815123031	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAATGTGCTGCTGTGTG	816	False	NA	NA	False	NA	NA	NA	79889482	79892263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79889550_79890347_79890443_79890533_79890954_79891756_79891782_79891873_79891934_79892019
48200	chr15	+	1996	12	NIC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	20	1	combination_of_known_junctions	FALSE	non_canonical	3	5	junction_6	82.1439977334702	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4733	False	NA	NA	False	NA	NA	NA	76215450	76219099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217217_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
48201	chr14	+	1724	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	36	2	-16	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6575	False	NA	NA	False	NA	NA	NA	76741953	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
48203	chr16	-	1232	14	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	4	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	495.709102995799	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAGCAAAAGCTACACTAT	9184	False	NA	NA	False	NA	NA	NA	91525507	91486404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486465_91486646_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
48204	chr4	+	2148	21	NNC	ENSMUSG00000028576.13	novel	2139	20	NA	NA	53	244	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_20	41.7957832801348	18	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCGGCAAAAAAGAAAACTT	NA	False	NA	NA	False	NA	NA	NA	94502780	94581710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187_94581351_94581532
48205	chr4	+	1165	9	NNC	ENSMUSG00000028601.19	novel	1307	10	NA	NA	8	0	intron_retention	FALSE	canonical	0	0	junction_3	265.254093983486	156	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	NA	False	NA	NA	NA	108022692	108036505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108022859_108026911_108026980_108027057_108027150_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
48207	chr2	+	2230	11	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	975	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5.88302643203309	1	96	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCATGCGTGTCGGTGCTG	3747	False	NA	NA	False	NA	NA	NA	30024807	30042017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30024883_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038697_30038796_30038942_30039001_30039711_30040651_30041737
48208	chr1	-	1467	6	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	-14	-554	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1818.0095709319	2	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7352	False	NA	NA	False	NA	NA	NA	160040389	160030490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160031294_160032537_160032636_160033686_160033766_160034182_160034280_160035948_160036166_160040216
48210	chr5	-	467	1	Intergenic	novelGene_857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAGTGACCCTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	129096638	129096171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_129096200_129096600
48211	chr11	+	2139	10	NIC	ENSMUSG00000006784.15	novel	2240	12	NA	NA	298	-7	intron_retention	FALSE	canonical	3	16	junction_1	5.45690184791497	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATAGATCTTGAGTGAC	NA	False	NA	NA	False	NA	NA	NA	100440670	100462782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
48212	chr10	+	3540	9	Intergenic	novelGene_3547	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_8	31.4880929876676	99	38	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTTGTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	120359263	120376131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120363521_120363638_120364338_120364520_120369971_120370079_120370224_120370312_120372451_120372613_120373440
48213	chr17	-	1131	3	NNC	ENSMUSG00000024248.15	novel	1076	3	NA	NA	-4	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2	142	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTTAGTTTGTTTGT	9943	False	NA	NA	False	NA	NA	NA	83821763	83809356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_83810167_83811528_83811658_83821571
48214	chr3	-	1609	8	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	7	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.498343489282	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTATATAACTTAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	131065666	131027109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027916_131029182_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043493_131043581_131065524
48216	chr4	-	3413	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	2	60	2	-60	multi-exon	FALSE	canonical	3	666	junction_4	59.9637750728526	2	149	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAATCTTGGACCTTGT	NA	False	NA	NA	False	NA	NA	NA	132237810	132219402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
48217	chr5	+	1787	15	NNC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	2544	6791	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	67	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGACAGGAGTAGGTCCTG	5210	False	NA	NA	False	NA	NA	NA	138177374	138185482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138177408_138177672_138177868_138178033_138178218_138179155_138179277_138179377_138179457_138180171_138180350_138180459_138180563_138180673_138180756_138180863_138180999_138181358_138181480_138181578_138181635_138181832_138181980_138182103_138182195_138182598_138182809_138185430
48219	chr5	+	3149	16	NNC	ENSMUSG00000029208.17	novel	3433	17	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	48.1788335267677	39	13	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGTCTTGATACTGGA	NA	False	NA	NA	False	NA	NA	NA	69714328	69730441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_69714396_69715527_69715640_69715784_69715934_69716189_69716271_69716892_69716971_69717774_69717859_69718477_69718543_69718996_69719201_69721866_69721991_69722772_69722906_69723703_69723848_69724470_69724605_69725738_69725841_69726571_69726692_69728103_69728141_69728926
48221	chr15	+	2537	12	Antisense	novelGene_ENSMUSG00000099083.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGCGGAGCAGATACTTT	NA	False	NA	NA	False	NA	NA	NA	102441988	102533870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_102442877_102446621_102446727_102449174_102449375_102454841_102454997_102455591_102455703_102456207_102456308_102459838_102459996_102462217_102462359_102465896_102466016_102471750_102471846_102502106_102502176_102533473
48222	chr8	-	2263	5	NNC	ENSMUSG00000031683.17	novel	3792	5	NA	NA	1067	-145	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	584.578640988533	20	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAAATGGTAAAATTACT	NA	False	NA	NA	False	NA	NA	NA	79546702	79533224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_79534875_79536575_79536690_79539604_79539710_79546114_79546422_79546615
48224	chr11	-	2097	2	NNC	ENSMUSG00000059534.9	novel	389	2	NA	NA	-42	3	intron_retention	FALSE	non_canonical	0	0	junction_1	0	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGACCGGCTTTTGCACG	NA	False	NA	NA	False	NA	NA	NA	4654384	4651978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4652897_4653205
48225	chr9	-	1041	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5771.15775559809	609	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386670_78387623_78387703_78387792_78387971_78388920
48226	chr13	-	2765	8	NNC	ENSMUSG00000021615.14	novel	424	4	NA	NA	3	-89667	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	52.1563583303677	30	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTAATGTGCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	90237724	90086706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_90088478_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
48227	chr1	+	2986	11	FSM	ENSMUSG00000056870.10	ENSMUST00000074525.10	3138	11	147	5	-35	-5	multi-exon	FALSE	canonical	3	15	junction_7	3.104834939252	72	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACTGTATGATATGCTC	NA	False	NA	NA	False	NA	NA	NA	44590817	44835993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_44591033_44728303_44728376_44747776_44747839_44783633_44783706_44793502_44793602_44805173_44805312_44812430_44812548_44813212_44813306_44820127_44820267_44827607_44827703_44834109
48228	chr7	-	1272	2	Genic_Genomic	ENSMUSG00000107383.2	novel	1342	1	NA	NA	9	89	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATGGTG	NA	False	NA	NA	False	NA	NA	NA	116425077	116423655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_116424228_116424377
48230	chr15	+	2053	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	11	7	0	-4	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	37	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGCAGTGCTAGTCAT	195	False	NA	NA	False	NA	NA	NA	38662187	38692683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
48232	chr4	-	1589	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	10	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	912.779842021065	1	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATACATGCTACAGGAACT	9	False	NA	NA	False	NA	NA	NA	41098173	41092739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41093888_41094296_41094380_41094700_41094839_41095144_41095272_41098001
48233	chr7	-	2008	18	NNC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	4	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	83.5110998983271	8	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATAGTCTTGGTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	27055375	27041554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27041680_27042064_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
48234	chr11	-	1419	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	401.071704806876	2	33	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTGTGAGTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	119190844	119179200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183651_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
48235	chr16	-	2253	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	129	4	0	-3	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	229	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATCACCTTTCTCTTGGT	8072	False	NA	NA	False	NA	NA	NA	17907027	17889592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
48236	chr7	+	3703	5	FSM	ENSMUSG00000074165.11	ENSMUST00000140964.8	1169	5	-9	-2525	-7	-8	multi-exon	FALSE	canonical	3	10	junction_2	14.5150783669948	140	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAACAAAAGTGTTCAC	NA	False	NA	NA	False	NA	NA	NA	41282972	41300946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_41283119_41284103_41284135_41296906_41297042_41297242_41297304_41297616
48237	chr7	+	3119	18	FSM	ENSMUSG00000078816.11	ENSMUST00000100301.11	3127	18	2	6	2	-6	multi-exon	TRUE	canonical	3	18	junction_10	8.64845927034781	40	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAATGTTTGGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	3352039	3379609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3367375_3367529_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
48238	chrX	+	642	1	Intergenic	novelGene_4104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAACAGTCTCACATGT	NA	False	NA	NA	False	NA	NA	NA	163772726	163773368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_163772700_163773400
48241	chr11	+	1817	13	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1231	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.613909190781	5	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGACCATGCTGTGTTCCT	5882	False	NA	NA	False	NA	NA	NA	70546796	70553334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70546896_70547271_70547607_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
48242	SIRV2	-	2048	11	NNC	SIRV2A	novel	2051	11	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	927.006305264425	6279	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCAACGTGGCATGCGT	NA	False	NA	NA	False	NA	NA	NA	5908	999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4090_4338_4480_4687_4801_5788
48243	chr15	-	1615	10	NIC	ENSMUSG00000022570.8	novel	1355	11	NA	NA	-7	-2	intron_retention	FALSE	canonical	3	225	junction_9	77.9136907730377	4	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTGGACTCAGAAGCTG	8912	False	NA	NA	False	NA	NA	NA	75801609	75796533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
48245	chr18	+	3198	3	NIC	ENSMUSG00000058881.14	novel	7725	6	NA	NA	-30651	1022	combination_of_known_splicesites	FALSE	canonical	3	27	junction_1	0	1	95	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATAATTTTACATGTAC	2499	False	NA	NA	False	NA	NA	NA	82975281	83020847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_82975575_83004868_83006324_83019397
48246	chr8	-	3056	5	NNC	ENSMUSG00000033732.11	novel	2957	13	NA	NA	-5	2304	intron_retention	FALSE	canonical	0	0	junction_3	293.854024134433	3	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGGAGCAGGGAGATATCT	NA	False	NA	NA	False	NA	NA	NA	111573413	111564895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111564982_111566503_111566617_111567741_111568576_111569315_111571232_111573306
48247	chr19	-	1994	5	NIC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	38	0	intron_retention	FALSE	canonical	3	1098	junction_1	69.4851602862079	10	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTGCTGTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	7183643	7175574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7176932_7177027_7177427_7181422_7181522_7181754_7181817_7183566
48248	chr11	+	2092	3	Intergenic	novelGene_2262	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	89	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCCATCTTCCCTTAAG	9551	False	NA	NA	False	NA	NA	NA	50080763	50085014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_50081093_50083168_50083934_50084016
48249	chr16	+	403	1	NIC	ENSMUSG00000022792.17	novel	1574	5	NA	NA	4623	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTCATTTCTTTACACA	NA	False	NA	NA	False	NA	NA	NA	16127086	16127489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_16127100_16127500
48250	chr17	+	1608	8	FSM	ENSMUSG00000071074.10	ENSMUST00000151488.2	1570	8	-23	-15	-3	-1	multi-exon	FALSE	canonical	3	158	junction_7	7.73542078324622	695	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGTAGCTCCTGTTGG	2622	False	NA	NA	False	NA	NA	NA	46559047	46562942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562414_46562491
48251	chr4	+	1498	8	NNC	ENSMUSG00000028745.19	novel	1674	9	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	574.466389489465	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	NA	False	NA	NA	NA	138920220	139019129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007804_139015073_139015144_139018313
48252	chr2	+	1280	6	FSM	ENSMUSG00000069020.10	ENSMUST00000147325.2	681	6	42	-641	8	-2	multi-exon	FALSE	canonical	3	23	junction_3	146.238708965855	1508	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTGTTTACTAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	29717414	29734074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732473_29732559_29732732_29732782_29733114
48254	chr13	+	3850	7	ISM	ENSMUSG00000091462.3_ENSMUSG00000021408.16	ENSMUST00000171137.2	1792	9	5474	-2384	-72	130	3prime_fragment	FALSE	canonical	3	34	junction_3	5.15320827791344	44	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGCTCATGTTGGCAT	NA	False	NA	NA	False	NA	NA	NA	34199154	34219149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_34199341_34200979_34201130_34205363_34205441_34210724_34210816_34211700_34212235_34214022_34214164_34216478
48255	chr10	-	2781	21	NIC	ENSMUSG00000020263.15	novel	3020	21	NA	NA	25	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	21.7591360122593	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	83484577	83435896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_83436692_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
48256	chr17	-	1823	6	NNC	ENSMUSG00000057789.15	novel	1974	7	NA	NA	22	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	52.973955865123	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCGCCTGGCATCTTTA	NA	False	NA	NA	False	NA	NA	NA	27247530	27238785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27240010_27240140_27240213_27241412_27241557_27241715_27241852_27244766_27244868_27247384
48257	chr10	+	461	1	Genic_Genomic	ENSMUSG00000025381.4	novel	NA	NA	NA	NA	-60	-418	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTTGGAATGAGGGGTG	NA	False	NA	NA	False	NA	NA	NA	128158655	128159116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_128158700_128159100
48258	chr10	+	658	1	NIC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	756	586	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCATCCCCAGTCCGCA	NA	False	NA	NA	False	NA	NA	NA	128159471	128160129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128159500_128160100
48259	chr7	-	1844	7	NNC	ENSMUSG00000053801.19	novel	1898	7	NA	NA	77	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	187.208143222694	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAAGCTACAAGTCCTCT	8711	False	NA	NA	False	NA	NA	NA	45480136	45474659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45475518_45476564_45476763_45476949_45477125_45477203_45477418_45479405_45479569_45479715_45479834_45480018
48260	chr8	+	1851	12	NNC	ENSMUSG00000003808.19	novel	1920	12	NA	NA	11	-7	intron_retention	FALSE	non_canonical	0	0	junction_8	258.304548294105	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGGACTCTGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	85583659	85595878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85583811_85587534_85587662_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594111_85594212_85594548_85594637_85594716_85594852_85594968_85595494
48261	chr4	-	746	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	10	2	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	1	20	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2623	False	NA	NA	False	NA	NA	NA	129229032	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
48262	chr10	-	1956	14	FSM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	-1	6	-1	-3	multi-exon	FALSE	canonical	2	14	junction_8	19.8357158000858	171	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGAGATTTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	81436710	81426743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
48263	chr7	+	1840	11	ISM	ENSMUSG00000040268.18	ENSMUST00000075181.11	2301	13	36	2790	24	378	5prime_fragment	FALSE	canonical	3	88	junction_1	49.3035495679571	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTCCCATTCCTTAATC	NA	False	NA	NA	False	NA	NA	NA	130467663	130511008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_130467731_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065
48265	chr4	-	2713	18	Antisense	novelGene_ENSMUSG00000066036.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	30.5744312743649	1	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGACAAAGAGACCCCAG	9670	False	NA	NA	False	NA	NA	NA	139183021	139167721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_139167852_139167954_139168132_139168500_139168604_139169992_139170134_139170708_139170882_139171902_139172001_139172552_139172661_139173167_139173285_139174167_139174378_139176130_139176281_139177623_139177851_139178553_139178634_139179036_139179293_139179889_139180045_139180439_139180589_139181280_139181369_139182477_139182566_139182758
48266	chr5	+	2196	5	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	2	123	2	-62	intron_retention	FALSE	canonical	3	424	junction_4	37.2718056981413	2	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGAAGGATATACATGTT	8041	False	NA	NA	False	NA	NA	NA	122510515	122520842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252
48267	chr15	+	1173	10	ISM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	653	8	591	-8	3prime_fragment	FALSE	canonical	3	551	junction_8	5205.23449027663	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTAACTCCTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	103149511	103155111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
48268	chr7	+	786	1	Genic_Genomic	ENSMUSG00000046591.11	novel	NA	NA	NA	NA	27206	764	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGTCACAACAGTATCT	NA	False	NA	-6	True	NA	NA	NA	79347874	79348660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_79347900_79348700
48270	chr17	+	4094	15	NIC	ENSMUSG00000024219.17	novel	4517	14	NA	NA	694	-4	combination_of_known_junctions	FALSE	canonical	3	18	junction_13	13.821197857063	62	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCATAGCTCTGGGGTCT	4797	False	NA	NA	False	NA	NA	NA	28227012	28281745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28277721_28277821_28278267_28278366_28279535
48271	chr4	-	1064	6	NIC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	20	-6	combination_of_known_splicesites	FALSE	canonical	2	4	junction_5	246.504685553845	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGAGTTCTTTCTCGTTA	NA	False	NA	NA	False	NA	NA	NA	134642306	134625165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134642199
48272	chr10	-	2586	19	Antisense	novelGene_ENSMUSG00000019889.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	13	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCACGCTTCGTTCGAT	NA	False	NA	NA	False	NA	NA	NA	28472050	28368964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_28369182_28372902_28372940_28427611_28427751_28435998_28436162_28442490_28442674_28444320_28444411_28445892_28445970_28449363_28449399_28450812_28450912_28451582_28451701_28456386_28456538_28461550_28461697_28461922_28462067_28462901_28463076_28464921_28465051_28465250_28465380_28467878_28468045_28468765_28468901_28471796
48274	chr1	+	1388	12	NNC	ENSMUSG00000018189.13	novel	1696	11	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	534.022688099446	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTAAACTCCATTCTTCA	NA	False	NA	NA	False	NA	NA	NA	143653049	143682675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672541_143674155_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
48275	chr8	+	2774	18	FSM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	51	0	-1	0	multi-exon	FALSE	canonical	3	176	junction_7	26.4246660485719	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAGTTATGTATCCAG	NA	False	NA	NA	False	NA	NA	NA	125247556	125278747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
48279	chr13	+	1836	17	NNC	ENSMUSG00000039242.11	novel	3892	12	NA	NA	2800	40499	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCGGAAGTATCTGGAGA	2507	False	NA	NA	False	NA	NA	NA	14172538	14214187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_14172767_14172947_14173040_14174641_14174710_14175698_14175766_14177146_14177260_14178132_14178282_14179727_14179869_14180372_14180437_14180526_14180593_14181026_14181125_14183201_14183275_14184211_14184322_14185131_14185227_14189319_14189411_14194288_14194469_14203855_14203992_14214122
48280	chr15	-	3292	18	NIC	ENSMUSG00000078937.9	novel	2895	19	NA	NA	-31	-228	intron_retention	FALSE	canonical	3	54	junction_14	10.9708642135292	5	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAATTCTTACTTGGCTG	5185	False	NA	NA	False	NA	NA	NA	89310097	89300835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89301183_89301347_89302149_89302934_89303088_89303178_89303314_89303393_89303559_89304094_89304212_89304290_89304397_89304894_89305081_89305547_89305744_89306327_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919_89309060_89309390_89309551_89310000
48281	chr2	+	1399	10	NNC	ENSMUSG00000026664.8	novel	1438	9	NA	NA	-10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	137.343041728044	8	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAGGCATATTAAGTCA	981	False	NA	NA	False	NA	NA	NA	4923819	4943535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117_4943258_4943300
48282	chr12	-	3612	4	FSM	ENSMUSG00000020547.6	ENSMUST00000222842.2	1567	4	-45	-2000	0	-1745	multi-exon	FALSE	canonical	3	931	junction_1	59.7345982008938	7	95	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGATACAAGTATTTGG	NA	False	NA	NA	False	NA	NA	NA	36206765	36170766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_36174038_36179990_36180168_36184889_36184955_36206666
48283	chr3	-	2205	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	152	33	0	0	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	2	95	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	96634792	96618838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
48284	chr7	-	1474	5	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1703	18	38	-18	3prime_fragment	FALSE	canonical	3	257	junction_4	35.4788669492136	901	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCCTTATGAATTATT	3263	False	NA	NA	False	NA	NA	NA	101518187	101507555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604
48285	chr4	+	2443	7	NNC	ENSMUSG00000029047.14	novel	1688	6	NA	NA	-2	1724	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	36.7408340799292	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAGTAAAATGTTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	155151508	155158614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155151632_155152279_155152361_155153119_155153527_155154843_155155020_155155097_155155234_155156161_155156302_155157234
48286	chr18	-	1872	13	NNC	ENSMUSG00000001380.8	novel	1989	13	NA	NA	-26	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	302.058527717174	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTCTACCGCTAACCTG	NA	False	NA	NA	False	NA	NA	NA	36916201	36899596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904386_36904482_36905306_36905437_36906607_36906669_36909229_36909350_36915732_36915823_36916063
48288	chr9	-	2630	13	FSM	ENSMUSG00000037949.9	ENSMUST00000042546.4	2653	13	5	18	5	0	multi-exon	FALSE	canonical	3	21	junction_1	6.44797556515911	72	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGCTTCTCCAAGACTT	NA	False	NA	NA	False	NA	NA	NA	122123484	122004957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_122005545_122030836_122030954_122080212_122080342_122082001_122082194_122086121_122086305_122087982_122088058_122088600_122088657_122090149_122090720_122092735_122092856_122100264_122100400_122101432_122101631_122104576_122104730_122123369
48289	chr1	-	3349	1	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	65	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCCTTCTCTTTTCTGA	30	False	NA	NA	False	NA	NA	NA	87626419	87623070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87623100_87626400
48290	chr10	+	3450	10	Antisense	novelGene_ENSMUSG00000118557.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGAGACCCGCTGGGCG	NA	False	NA	NA	False	NA	NA	NA	58999945	59057297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_59001521_59001785_59002516_59006637_59006773_59012674_59012839_59014582_59014679_59016840_59017000_59019341_59019534_59027987_59028183_59028518_59028638_59057212
48292	chr6	-	1093	10	NNC	ENSMUSG00000019210.11	novel	1312	9	NA	NA	63	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	318.501700675732	3	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	NA	False	NA	NA	NA	120799583	120772204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120772466_120772513_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
48293	chr4	+	1631	8	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-172	-13	intron_retention	FALSE	canonical	3	279	junction_2	19.5875845725744	19	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTTTTCTGACACCAGA	10	False	NA	NA	False	NA	NA	NA	41755585	41758682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
48295	chr2	+	1396	5	NIC	ENSMUSG00000001403.14	novel	967	6	NA	NA	34	-6	intron_retention	FALSE	canonical	3	1606	junction_1	48.7974128412562	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAATTGTTTTCTCAAGT	NA	False	NA	NA	False	NA	NA	NA	164611856	164614821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164612001_164612286_164612315_164613212_164613979_164614086_164614147_164614423
48296	chr7	+	1403	7	NNC	ENSMUSG00000070837.7	novel	1320	7	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	170.358119527332	965	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2885	False	NA	NA	False	NA	NA	NA	6998472	7006090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6998834_6999212_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
48297	chr13	+	1139	9	NNC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	318.490556178672	19	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTATATATTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	85337558	85361019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345520_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
48298	chr1	+	983	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	5	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10797.270406913	4	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454452	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454683_86456916_86456967_86457177_86457227_86457457_86457527_86457686_86457749_86457896
48300	chr6	-	1841	8	NIC	ENSMUSG00000048930.13	novel	2848	9	NA	NA	429	11	intron_retention	FALSE	canonical	3	198	junction_7	71.3416614122577	377	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCGCAAGTTTAGTAT	NA	False	NA	NA	False	NA	NA	NA	113353908	113343604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113352221_113352800_113353026_113353852
48301	chr13	-	3637	16	FSM	ENSMUSG00000041417.16	ENSMUST00000055518.13	7113	16	40	3436	36	-335	multi-exon	FALSE	canonical	2	8	junction_10	7.37443029814658	2	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTTTCAAATACACCTTTG	NA	False	NA	NA	False	NA	NA	NA	101904685	101820506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_101821578_101822715_101822887_101823480_101823550_101823638_101823816_101824008_101824152_101825140_101825267_101825486_101825668_101825906_101826006_101826988_101827092_101837954_101838035_101838218_101838421_101839216_101839349_101845427_101845503_101846157_101846251_101893833_101894548_101904484
48302	chr2	-	1285	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	210	5	51	0	multi-exon	FALSE	canonical	3	1052	junction_5	244.745255316625	2367	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGTGTGCTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	155668635	155661756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
48303	chr12	+	1454	1	FSM	ENSMUSG00000091905.4	ENSMUST00000167639.4	691	1	-117	-646	-117	646	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCTTAAAAAAAAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	64832967	64834421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_64833000_64834400
48304	chr4	-	1788	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-59	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	327.927795236831	1	83	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCATGCTGGTGGGTTTTA	2554	False	NA	NA	False	NA	NA	NA	129229101	129203306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129203807_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216658_129222380_129222527_129228289_129228438_129229010
48305	chr18	+	1735	5	NNC	ENSMUSG00000102918.2	novel	3588	5	NA	NA	18	-1564	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.762772928722	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGGGAGTTGAATATGCAA	NA	False	NA	NA	False	NA	NA	NA	37939486	37973362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_37939542_37940905_37942031_37958073_37958133_37966317_37966407_37972955
48306	chr6	-	1888	9	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-13	-14	intron_retention	FALSE	canonical	3	134	junction_8	102.009114176136	13	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAACAAAAAAAAGTTATA	NA	False	NA	NA	False	NA	NA	NA	113354350	113343629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113352221_113352800_113353026_113353852_113353907_113354276
48307	chr17	+	1181	1	ISM	ENSMUSG00000024030.8	ENSMUST00000024829.8	5832	15	59121	0	5843	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTGCATTTGGTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	31335781	31336962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_31335800_31337000
48308	chr6	+	1395	1	NIC	ENSMUSG00000059659.8	novel	3694	3	NA	NA	-891	-1524	mono-exon	FALSE	NA	NA	NA	NA	NA	1382	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGGGATGAGAAATGAAGA	NA	False	NA	NA	False	NA	NA	NA	128449661	128451056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_128449700_128451100
48309	chr4	+	2245	1	Genic_Genomic	ENSMUSG00000087332.2	novel	NA	NA	NA	NA	2901	1634	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGCGAATGGATTAAGAAG	NA	False	NA	NA	False	NA	NA	NA	99460637	99462882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_99460600_99462900
48310	chr12	-	1795	2	FSM	ENSMUSG00000096458.8	ENSMUST00000178384.2	1284	2	-2	-509	-2	509	multi-exon	FALSE	canonical	3	30	junction_1	0	150	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATACATTGTAATACTAC	NA	False	NA	NA	False	NA	NA	NA	102709922	102707979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_102709654_102709801
48311	chr11	+	2310	3	NIC	ENSMUSG00000018599.6	novel	2522	4	NA	NA	-5	-9	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	76.5	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGTGTATATGTGTAA	NA	False	NA	NA	False	NA	NA	NA	60619263	60623768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_60619394_60621108_60621262_60621741
48312	chr17	-	2963	16	FSM	ENSMUSG00000003546.11	ENSMUST00000003642.7	2322	16	-637	-4	241	-3	multi-exon	FALSE	canonical	3	33	junction_15	25.3531501439608	103	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTCGGAGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	46956707	46941552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006
48313	chr11	-	3245	22	NIC	ENSMUSG00000017146.13	novel	6572	23	NA	NA	16	4	combination_of_known_splicesites	FALSE	canonical	2	7	junction_13	76.2771530776592	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAAGAATGACTGATTGG	NA	False	NA	NA	False	NA	NA	NA	101442689	101379585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
48314	chr8	+	2044	7	NNC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	82.3380565446839	487	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTGTCTTATTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	96058930	96074137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96072851
48315	chr10	+	1912	3	NIC	ENSMUSG00000020224.16	novel	1463	3	NA	NA	19	98	intron_retention	FALSE	canonical	3	22	junction_2	6.5	58	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTATGCTGAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	120063025	120067567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_120063455_120063878_120064109_120066314
48317	chr3	+	1887	6	FSM	ENSMUSG00000028128.14	ENSMUST00000029771.13	1872	6	-20	5	-20	-5	multi-exon	FALSE	canonical	3	41	junction_2	13.6176356244394	146	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAATCGCATTTATATCTT	NA	False	NA	NA	False	NA	NA	NA	121517165	121528692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121517452_121518625_121518732_121522985_121523204_121525172_121525352_121526029_121526190_121527754
48318	chr11	-	1222	4	NNC	ENSMUSG00000034341.18	novel	1012	7	NA	NA	50	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	524.202463006635	16	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGAGGTTCTCTGACTCT	NA	False	NA	NA	False	NA	NA	NA	115977748	115969404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115970423_115970533_115970580_115974671_115974774_115977692
48319	chr18	-	2179	6	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-326	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_5	82.1690939465685	8	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	70605906	70585282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70605361
48320	chr13	+	2855	2	NNC	ENSMUSG00000050002.15	novel	1898	3	NA	NA	3262	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCACCATCGGGCTGTACT	NA	False	NA	NA	False	NA	NA	NA	58308758	58311755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_58311028_58311169
48321	chr14	+	1373	9	NIC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	110	-6	intron_retention	FALSE	canonical	3	1001	junction_1	192.418123821536	1626	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAAGACATTTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	55253020	55261588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
48322	chr9	+	1378	11	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	1	919	combination_of_known_junctions	FALSE	canonical	3	69	junction_1	184.899567333188	46	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTACACTCAAGTAT	9123	False	NA	NA	False	NA	NA	NA	15217560	15226616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397
48323	chr19	+	1442	9	NIC	ENSMUSG00000080268.5	novel	1388	10	NA	NA	-13	-11	intron_retention	FALSE	canonical	3	224	junction_4	16.3611582719562	27	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGACCTTGGTGTGGCTG	2750	False	NA	NA	False	NA	NA	NA	5091401	5099934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
48324	chr7	-	1956	14	NNC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	-2522	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	131.741947869319	1	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGCTTAACTGAGTGGTA	NA	False	NA	NA	False	NA	NA	NA	27244692	27231438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237044_27237145_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612
48325	chr12	+	1363	8	ISM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	105	1	93	-1	intron_retention	FALSE	canonical	3	2699	junction_7	151.414689390644	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATTTCTTACAATCTA	NA	False	NA	NA	False	NA	NA	NA	87313576	87320752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220
48327	chr3	-	1939	11	NNC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	-16	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	532.001964282088	2	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTGCGTGTGTCTCATC	NA	False	NA	NA	False	NA	NA	NA	104725574	104702146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706800_104711843_104712030_104712217_104712424_104725251
48328	chr12	-	1078	4	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	917.824601980139	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTAAAATTTCTCGTGC	NA	False	NA	NA	False	NA	NA	NA	105188977	105183021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183321_105183538_105183961_105184917_105185089_105188791
48329	chr8	-	2071	11	ISM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	1757	8	1756	-8	intron_retention	FALSE	canonical	3	169	junction_7	22.4733175121076	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGACCTGCCTGGTGTCC	9021	False	NA	NA	False	NA	NA	NA	84829635	84823708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374
48330	chr4	-	1924	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	8	0	-2	0	multi-exon	FALSE	canonical	3	393	junction_8	23.5424491839793	1	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	NA	False	NA	NA	NA	120682895	120614634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
48331	chr10	+	2417	10	NNC	ENSMUSG00000019845.9	novel	4192	11	NA	NA	5	-7	intron_retention	FALSE	non_canonical	0	0	junction_2	51.1499852165601	4	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	39010027	39025715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_39010104_39010201_39010276_39010981_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39021710_39023307_39023449_39023758_39023934_39025454
48332	chr5	-	1490	8	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	6237	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	552.12749932439	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCCTGGGTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	24776228	24770343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773864_24776121
48333	chr6	-	2749	13	NNC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	-5	-987	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	342.376366574693	1	141	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAAATTGACTCTTCGG	NA	False	NA	NA	False	NA	NA	NA	148113508	148081563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148083238_148083385_148083474_148084551_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148103993_148104041_148106273_148106383_148108030_148108174_148113467
48334	chr17	-	2899	6	NNC	ENSMUSG00000023994.14	novel	1255	8	NA	NA	-23	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.466252583998	1	107	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGACTGGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	48700274	48693921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_48695021_48695068_48696371_48698276_48698379_48698897_48699078_48699367_48699517_48700207
48336	chr13	+	2834	17	FSM	ENSMUSG00000035493.11	ENSMUST00000045173.10	2714	17	-129	9	-66	-9	multi-exon	FALSE	canonical	3	51	junction_1	6.48917367620871	176	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACAAACACCTGTGTGCT	9296	False	NA	NA	False	NA	NA	NA	56757269	56787162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
48337	chr5	+	853	6	ISM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	370	4803	-39	31	internal_fragment	FALSE	canonical	3	3017	junction_4	145.463947423408	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTCTTCTGTAATAACA	717	False	NA	NA	False	NA	NA	NA	77099584	77110357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273
48338	chr4	+	2030	5	Intergenic	novelGene_1984	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	107	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAAATTAAAGACAAT	NA	False	NA	NA	False	NA	NA	NA	137047011	137063442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_137048504_137056023_137056222_137056325_137056435_137059716_137059789_137063283
48340	chr12	+	2218	11	NNC	ENSMUSG00000017843.15	novel	2367	12	NA	NA	49	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	389.936866684852	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGATATCAGTGTGTAT	4970	False	NA	NA	False	NA	NA	NA	110452221	110538115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517531_110521232_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537131
48341	chr12	+	2113	9	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	-7	-942	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	178.51291094764	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTTGTCATCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	59113700	59119842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117177_59118483
48342	chr10	+	1851	10	NNC	ENSMUSG00000020085.16	novel	1442	10	NA	NA	9	401	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	59.1006674149192	55	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAGCGTGTGATTAAACA	NA	False	NA	NA	False	NA	NA	NA	61551050	61575440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61551132_61561634_61561834_61562143_61562260_61563459_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571233_61571438_61572361_61572538_61574806
48343	chr7	-	1436	11	FSM	ENSMUSG00000030839.13	ENSMUST00000033127.12	1465	11	12	17	9	0	multi-exon	FALSE	canonical	3	75	junction_10	7.18609768928867	348	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATTCCCTGGAGAACCC	NA	False	NA	NA	False	NA	NA	NA	46289219	46092594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
48345	chr6	+	1502	6	NIC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	7646	-138	intron_retention	FALSE	canonical	3	779	junction_5	39.0251201151258	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACAGCCAGCCTCTGTTG	2665	False	NA	NA	False	NA	NA	NA	125116641	125121578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118466_125120963
48346	chr5	+	3596	25	NNC	ENSMUSG00000056602.14	novel	10893	61	NA	NA	-45150	-3342	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	5.26518966631044	5	80	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAGTGGAAATCATTCTC	NA	False	NA	NA	False	NA	NA	NA	150277967	150333811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_150278108_150282263_150282357_150282454_150282554_150284579_150284682_150292933_150293038_150293591_150293701_150295986_150296074_150302273_150302446_150304262_150304396_150305080_150305189_150309449_150309709_150312237_150312421_150314100_150314188_150317442_150317708_150318455_150318643_150319207_150319333_150321662_150321721_150322663_150322756_150322996_150323170_150324257_150324419_150325064_150325176_150326906_150327062_150328407_150328508_150328714_150328887_150333490
48347	chr11	-	694	3	NIC	ENSMUSG00000058546.9	novel	560	5	NA	NA	47	0	intron_retention	FALSE	canonical	3	18151	junction_2	351	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	6517	False	NA	NA	False	NA	NA	NA	78073856	78071760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_78072050_78072242_78072420_78073628
48348	chr3	-	2585	19	FSM	ENSMUSG00000037325.11	ENSMUST00000108156.9	2687	19	97	5	9	-5	multi-exon	FALSE	canonical	3	20	junction_12	6.84754619472471	74	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATATACTTGTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	36667529	36627295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
48349	chr11	-	1462	3	ISM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	0	12	0	-12	intron_retention	FALSE	canonical	3	11093	junction_2	2695.5	49	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAACTCGTACTTAGTAT	NA	False	NA	NA	False	NA	NA	NA	29497860	29495857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_29496030_29496290_29496423_29496702
48351	chr13	-	1931	13	NNC	ENSMUSG00000116207.2	novel	3339	17	NA	NA	14124	-644	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	79.3273807290606	1	56	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCCTCACAAAACAATGGA	NA	False	NA	NA	False	NA	NA	NA	119531364	119472707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472943_119474911_119475028_119476362_119476482_119491190_119491277_119494038_119494199_119502862_119503043_119505011_119505173_119506447_119506682_119508931_119508989_119518211_119518400_119523114_119523204_119525729_119525818_119531146
48352	chr7	-	1863	12	FSM	ENSMUSG00000002068.17	ENSMUST00000108023.10	2000	12	134	3	102	-3	multi-exon	FALSE	canonical	2	563	junction_4	98.4049652714874	380	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGCTGTTCTTAACTC	NA	False	NA	NA	False	NA	NA	NA	37806825	37797411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
48353	chr5	+	2763	13	NNC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	-13	-18	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	42.7150604458063	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTTGAAGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	143846861	143868242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143846898_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143860294_143860451_143862038_143863022_143864916_143865085_143865759_143865861_143865998_143866169_143867833
48354	chr10	+	2253	10	ISM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	29	3458	-9	-3458	5prime_fragment	FALSE	canonical	3	1529	junction_8	1126.46882988006	5	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCAACCAACAAACCAAAAG	NA	False	NA	NA	False	NA	NA	NA	128657791	128710028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289
48355	chr15	-	1911	13	NNC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	451	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3096.92827204994	1	119	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	-8	True	NA	NA	False	NA	NA	NA	36608766	36595904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598227_36598372_36598451_36598557_36599195_36599287_36599448_36599722_36600844_36600933_36601113_36601252_36601570_36601590_36606068_36606194_36608586
48356	chr8	+	1975	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	28	9	28	-8	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	1	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGTTATATAATTTTTC	NA	False	NA	NA	False	NA	NA	NA	13957830	13990513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
48357	chr4	+	847	1	Intergenic	novelGene_1839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACTGATCGATGCACA	7537	False	NA	NA	False	NA	NA	NA	46480109	46480956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_46480100_46481000
48359	chr1	-	2356	1	Intergenic	novelGene_360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCCAAATCCAAAGTCCAAA	NA	False	NA	NA	False	NA	NA	NA	38135091	38132735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_38132700_38135100
48360	chr19	+	678	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	66	1610	5	12	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCCCAGCAGGGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	5540548	5543619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
48362	chr3	-	1826	5	FSM	ENSMUSG00000040374.14	ENSMUST00000059021.10	1749	5	-78	1	-78	-1	multi-exon	FALSE	canonical	3	32	junction_2	14.3592304807744	168	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTGCATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	5641377	5625560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
48363	chr7	-	1254	5	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-76	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	930.890266089403	80	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8789	False	NA	NA	False	NA	NA	NA	141941670	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930823_141939280_141939356_141941473
48364	chr3	+	2073	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	-41	5	-41	-5	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	624	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGAATGCCAGGTATTTT	NA	False	NA	NA	False	NA	NA	NA	121085380	121156738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
48365	chr12	+	1486	6	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	29	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2459.00293615115	15	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCATACAAGTATTAAATG	NA	False	NA	NA	False	NA	NA	NA	24758268	24764102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24761068_24763843
48366	chrX	-	2472	1	Antisense	novelGene_ENSMUSG00000031403.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAACTGTAGACTCCTAT	NA	False	NA	NA	False	NA	NA	NA	74142147	74139675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_74139700_74142100
48367	chr2	-	2442	13	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	17	20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	214.569902492301	1	110	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTCAAAAAAAAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	165740919	165669081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687663_165687842_165688057_165688160_165693919_165694069_165717624_165717696_165740835
48368	chr1	-	2018	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	68	124	7	-124	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	77	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTCGCTGGACACCATTT	NA	False	NA	NA	False	NA	NA	NA	79836345	79772037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
48369	chr3	-	1332	8	NNC	ENSMUSG00000028029.12	novel	1126	7	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	420.184896133566	22	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTGCTCATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	132389613	132366259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132384490_132384725_132389549
48370	chr1	-	3867	11	ISM	ENSMUSG00000026235.15	ENSMUST00000188797.7	3612	17	1	12921	1	10737	5prime_fragment	FALSE	canonical	3	112	junction_8	21.2367605815953	9	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCGAAGCTGCCCAAGCCC	NA	False	NA	NA	False	NA	NA	NA	77491724	77362696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
48371	chrX	+	1589	9	FSM	ENSMUSG00000025333.11	ENSMUST00000026383.4	1586	9	-44	41	21	-41	multi-exon	FALSE	canonical	3	18	junction_8	3.91910385164772	86	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATCCAAATCCATGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	151564937	151591601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_151565289_151568038_151568149_151569121_151569217_151573479_151573573_151576324_151576435_151578551_151578661_151580695_151580814_151581373_151581612_151591236
48373	chr11	-	1809	20	Antisense	novelGene_ENSMUSG00000020464.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTATCTGCTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	29111718	29088509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_29088605_29089223_29089277_29089949_29090005_29091222_29091321_29091665_29091771_29095432_29095500_29096795_29096833_29097298_29097364_29097442_29097533_29098276_29098330_29103229_29103339_29104142_29104214_29104299_29104369_29104818_29104898_29105712_29105797_29106834_29106942_29107022_29107079_29109322_29109389_29110141_29110210_29111336
48374	chr8	+	2007	4	ISM	ENSMUSG00000018796.14	ENSMUST00000110371.8	2100	20	38960	-1552	728	-19	3prime_fragment	FALSE	canonical	3	409	junction_2	13.9124245031395	1	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGGAGTGAGTGGAG	NA	False	NA	NA	False	NA	NA	NA	46984828	46989069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_46984969_46986402_46986505_46986601_46986674_46987376
48375	chr8	+	1600	6	NIC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	-11	-1	intron_retention	FALSE	canonical	3	188	junction_1	267.806945391638	9	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATGTCTTCAGTGCTA	NA	False	NA	NA	False	NA	NA	NA	71819574	71822375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71819723_71819878_71820014_71820287_71820493_71820602_71820756_71821193_71821948_71822170
48376	chr15	-	1199	2	Genic_Genomic	ENSMUSG00000082585.4	novel	648	1	NA	NA	-131	479	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTAAATACAATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73966313	73965055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_73966033_73966091
48377	chr5	-	1995	12	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	46	-2	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	231.272405660154	1	69	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAACTGGTGTTAATTTA	4414	False	NA	NA	False	NA	NA	NA	123887384	123866788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123884834_123884934_123887351
48378	chr12	+	630	1	FSM	ENSMUSG00000043998.11	ENSMUST00000060579.10	2614	1	1917	67	1917	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	66	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCCCTAATCATTTTGC	4211	False	NA	NA	False	NA	NA	NA	69232847	69233477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_69232800_69233500
48380	chr2	+	1770	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	9493	5	intron_retention	FALSE	canonical	2	21	junction_2	153.661605122714	18	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGTTTCTCACCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	156572904	156604880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156572978_156587754_156588117_156589942_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
48381	chr11	-	310	1	Intergenic	novelGene_2420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTCTGCCTCCCTAG	NA	False	NA	NA	False	NA	NA	NA	79914331	79914021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_79914000_79914300
48384	chr3	-	3556	7	NIC	ENSMUSG00000004896.17	novel	1620	7	NA	NA	-9	-9	intron_retention	FALSE	canonical	3	13	junction_2	42.3582603776669	3	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTTTCTATAAATACCAT	9434	False	NA	NA	False	NA	NA	NA	87837460	87830978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_87831220_87831650_87831836_87832198_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230
48385	chr4	-	3061	5	NNC	ENSMUSG00000047777.10	novel	3205	4	NA	NA	59	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	63.7651942677194	104	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGCCTCCTTAGGTG	NA	False	NA	NA	False	NA	NA	NA	152080656	152074087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_152076237_152076526_152077050_152078446_152078549_152080282_152080359_152080445
48386	chrX	-	2038	9	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	32	-5	intron_retention	FALSE	canonical	0	0	junction_7	472.351762460986	2	92	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72830471	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826276_72826323_72830380
48387	chr15	+	1699	10	Intergenic	novelGene_3309	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCAACTTTAGGCTGTGG	2246	False	NA	NA	False	NA	NA	NA	75628534	75711398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_75628819_75629389_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651405_75657300_75657485_75681374_75681528_75709315_75709513_75711104
48388	chr10	-	924	8	Antisense	novelGene_ENSMUSG00000025410.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGGGGGCCCCAGCTG	3461	False	NA	NA	False	NA	NA	NA	127117676	127112652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127112719_127113123_127113187_127113352_127113393_127113560_127113636_127113729_127113805_127113985_127114090_127114183_127114276_127117267
48389	chr11	-	3766	13	NIC	ENSMUSG00000033909.18	novel	3391	19	NA	NA	27	-6493	intron_retention	FALSE	canonical	3	126	junction_5	7.07695791518738	1	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTCCTGGCCAGAGCCA	NA	False	NA	NA	False	NA	NA	NA	118180979	118159706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118178650_118180782
48390	chr7	-	1483	9	Antisense	novelGene_ENSMUSG00000030638.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	222	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGGCCTCCCACTCGA	NA	False	NA	NA	False	NA	NA	NA	81956618	81889370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_81889438_81909338_81909405_81917483_81917559_81919978_81920124_81923067_81923202_81925333_81925492_81933260_81933365_81934226_81934344_81956001
48391	chr11	-	815	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	6	551	6	43	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGATTGAGTTCCGG	NA	False	NA	NA	False	NA	NA	NA	115503789	115499294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
48393	chr5	+	1399	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	3	8	0	-1	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	8	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTAAGGAGTCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	104582986	104588908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
48394	chr17	-	1760	10	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	43	-234	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	285.146139703231	20	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050140	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006246_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
48395	chr18	+	1295	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	7	-2	0	2	multi-exon	FALSE	canonical	1	2	junction_1	156.039168871864	43	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	67774677	67787234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
48397	chr7	-	2350	3	FSM	ENSMUSG00000030960.17	ENSMUST00000154914.2	811	3	94	-1633	40	1633	multi-exon	FALSE	canonical	3	351	junction_1	20.5	235	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGACACCTTCATACAGAC	NA	False	NA	NA	False	NA	NA	NA	132454274	132450201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_132452439_132453154_132453221_132454227
48398	chr17	+	2619	12	NIC	ENSMUSG00000041354.17	novel	3252	18	NA	NA	235	-4	intron_retention	FALSE	canonical	3	99	junction_2	12.8930758532895	55	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTGTCCCCATCCTT	6018	False	NA	NA	False	NA	NA	NA	34151339	34156657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
48399	chr6	-	1548	2	ISM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	10007	49	-19	0	3prime_fragment	FALSE	canonical	3	36	junction_1	0	227	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	134864814	134846119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_134847446_134864592
48400	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	4	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
48402	chr4	-	2336	8	Antisense	novelGene_ENSMUSG00000098569.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	87	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGGCTTCCACAGAACCA	3391	False	NA	NA	False	NA	NA	NA	139376998	139365712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_139365882_139367926_139367992_139369381_139369596_139370687_139370858_139371426_139371545_139372289_139372407_139375466_139375905_139375953
48403	chr5	+	2145	9	NNC	ENSMUSG00000079562.8	novel	2193	9	NA	NA	-22	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	191.44565155678	2	103	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTCATTTGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	33492882	33530629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529147_33529610
48405	chr4	-	2626	6	NNC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	24	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	47.7518586025717	53	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACCCTTGTGTGAACA	-2	True	NA	NA	False	NA	NA	NA	16013772	15997229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_15999001_16001929_16002022_16005356_16005549_16006356_16006494_16008600_16008756_16013493
48406	chr2	-	1426	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACATCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	152185902	152179350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179781_152180321_152180608_152181634_152181928_152184956_152185248_152185776
48409	chr2	-	1340	8	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	3	-1017	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5822.98396399114	1	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3762	False	NA	NA	False	NA	NA	NA	154734725	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719818_154726230_154726367_154729623_154729710_154730114_154730281_154734609
48411	chr7	-	1206	6	NNC	ENSMUSG00000025512.16	novel	6759	11	NA	NA	10511	23	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	86.8299487504167	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAAGGCACCAACAGGTG	4702	False	NA	NA	False	NA	NA	NA	141095869	141075286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141095818
48413	chr3	+	2582	8	NNC	ENSMUSG00000028034.16	novel	4525	22	NA	NA	-385	-9	intron_retention	FALSE	canonical	3	19	junction_5	639.045270026199	1	90	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTACTATGATGAGTGT	NA	False	NA	NA	False	NA	NA	NA	151928549	151942454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151939340_151940160_151940208_151941104_151941242_151942243
48415	chr4	-	3272	11	FSM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	52	2745	-31	3	multi-exon	TRUE	canonical	2	10	junction_9	3.7	41	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAAAGAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	87951549	87690906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_87692384_87700523_87700596_87701885_87701958_87707523_87707624_87710089_87710220_87712172_87712249_87758918_87759627_87792074_87792219_87798302_87798386_87949760_87949942_87951320
48416	chr9	-	1125	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	961.498049920019	12	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAAAAGTGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	21671578	21666739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21667422_21668460_21668490_21668585_21668691_21668980_21669126_21671414
48417	chr8	-	3273	20	NNC	ENSMUSG00000031788.15	novel	3277	20	NA	NA	-1088	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_19	29.2254584878102	55	20	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTACACAAGTGCAATCT	NA	False	NA	NA	False	NA	NA	NA	95870263	95826466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95827081_95827274_95827302_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95861344_95861488_95864542_95864748_95870140
48419	chr6	-	2713	19	NNC	ENSMUSG00000030091.18	novel	7037	40	NA	NA	6	-816	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.548210336051	1	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGACACCCGGGGCGTA	NA	False	NA	NA	False	NA	NA	NA	91093795	91030379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_91030436_91031371_91031479_91032206_91032400_91037543_91037718_91039699_91039922_91042139_91042286_91046145_91046345_91047113_91047270_91048823_91048962_91050174_91050316_91051229_91051337_91052888_91052958_91053539_91053699_91062840_91062974_91064814_91064966_91066816_91066914_91075547_91075680_91078244_91078382_91093599
48420	chr6	+	4072	8	NIC	ENSMUSG00000041477.15	novel	3313	9	NA	NA	-10	-2	intron_retention	FALSE	canonical	3	31	junction_6	11.7038280847223	27	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATGTCTGGGGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	119152238	119197165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119194941_119196963
48421	chr17	-	2359	11	NNC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	4	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	261.690733500443	1	147	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGACAGAATGTGAGGATTT	NA	False	NA	NA	False	NA	NA	NA	32540129	32523957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531216_32531348_32534607_32534759_32535160_32535642_32536040_32536281_32537684_32537784_32540058
48422	chr11	+	1279	5	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-2699	-17553	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	415.259181114638	3	62	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTAAAGAAAATCTTCCT	6732	False	NA	NA	False	NA	NA	NA	88858378	88864227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88858476_88861243_88861351_88861723_88861851_88862193_88862314_88863399
48425	chr17	-	903	6	Antisense	novelGene_ENSMUSG00000000579.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	874	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCGCCCGCCGAGTAGA	NA	False	NA	NA	False	NA	NA	NA	6875299	6869196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_6869234_6870883_6870926_6873121_6873342_6874008_6874134_6874471_6874549_6874897
48426	chr9	+	1419	1	FSM	ENSMUSG00000062309.9	ENSMUST00000080514.9	1423	1	3	1	3	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	711	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTTCAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	57411311	57412730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57411300_57412700
48427	chr5	+	1758	3	Antisense	novelGene_ENSMUSG00000066551.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCTGTGAGAGCGGGAG	NA	False	NA	NA	False	NA	NA	NA	148985067	148989791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148985723_148986535_148987567_148989719
48428	chr14	-	1576	5	FSM	ENSMUSG00000021891.9	ENSMUST00000227595.2	1027	5	8	-557	-5	557	multi-exon	FALSE	canonical	3	12	junction_3	105.354164606816	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGGATTTGTTTGCACA	NA	False	NA	NA	False	NA	NA	NA	31216970	31200984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31215553_31215922_31216858
48429	chr19	+	2660	12	NIC	ENSMUSG00000018820.14	novel	5611	13	NA	NA	31	1	combination_of_known_junctions	FALSE	canonical	3	125	junction_1	17.7223769463382	91	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTGTCAGGTCTCCTA	NA	False	NA	NA	False	NA	NA	NA	42159063	42180157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
48431	chr10	+	1154	13	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	1786.41482016978	475	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	128657786	128713498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128687606_128687802_128689051_128689121_128708289_128708380_128713201
48432	chr3	+	1593	12	FSM	ENSMUSG00000028085.13	ENSMUST00000107672.8	1820	12	19	208	6	-208	multi-exon	FALSE	canonical	0	0	junction_11	47.5594451864851	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGCAGAATAAGTATTGT	NA	False	NA	NA	False	NA	NA	NA	85481444	85553678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85553501
48433	chr13	+	1190	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	422	3735	422	-3735	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGACTGGATTATTGTA	NA	False	NA	NA	False	NA	NA	NA	92491655	92521826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
48434	chr13	-	3762	7	ISM	ENSMUSG00000021589.14	ENSMUST00000022078.12	4980	12	33059	14	2642	-14	3prime_fragment	FALSE	canonical	3	85	junction_5	10.2902326936221	44	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAACAAGTTCAA	NA	False	NA	NA	False	NA	NA	NA	76058927	76017669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_76020581_76024289_76024387_76025491_76025659_76026915_76027090_76041024_76041146_76050296_76050410_76058748
48435	chr5	+	2518	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	297	103	-4	-103	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	4	108	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGCTCTCTTGTGGTCA	4591	False	NA	NA	False	NA	NA	NA	29940982	29991373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
48436	chr19	+	2653	13	NIC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	305	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	24.7229088543849	45	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTGCCCCTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	25214643	25411860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_25214682_25252111_25252199_25295668_25295797_25355774_25355895_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403349_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
48437	chr10	-	2791	4	FSM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	11	-120	11	120	multi-exon	FALSE	canonical	3	56	junction_3	9.97775303139718	93	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATAGAAAGCAGACTCAG	9128	False	NA	NA	False	NA	NA	NA	80537678	80520966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80523008_80525685_80525889_80526902_80527402_80537630
48438	chr3	+	1190	9	NNC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	-4	70	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	719.202292474099	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGTGTGTGAGTTGAA	4938	False	NA	NA	False	NA	NA	NA	138148867	138161074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157119_138159569_138159639_138160428_138160568_138160845
48439	chr5	+	3679	6	NNC	ENSMUSG00000055991.16	novel	3794	6	NA	NA	-54	-6	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	23.6101673013979	1	179	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGCTGACTTGAGGTT	883	False	NA	NA	False	NA	NA	NA	145141317	145158554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155531_145156862
48440	chr18	+	1335	9	ISM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	0	1575	0	1087	5prime_fragment	FALSE	canonical	3	60	junction_6	354.516924842806	23	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTTTTCTGATACATT	NA	False	NA	NA	False	NA	NA	NA	68433470	68453402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296
48441	chr12	-	1517	6	NNC	ENSMUSG00000021276.11	novel	1579	6	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	208.901507893074	1046	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATATTAATCCTGTTG	3384	False	NA	NA	False	NA	NA	NA	110855544	110839595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110840587_110843274_110843405_110845421_110845474_110846118_110846249_110850323_110850493_110855499
48442	chr12	+	2758	6	NIC	ENSMUSG00000021203.16	novel	424	4	NA	NA	-21	-2	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	32.5047688808888	67	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTCAGTCTGGCTTCTT	8442	False	NA	NA	False	NA	NA	NA	103355222	103372602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_103355368_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
48443	chr10	-	3650	5	Antisense	novelGene_ENSMUSG00000019845.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	120	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGCTGAGTGGGAGGGGC	NA	False	NA	NA	False	NA	NA	NA	39026142	39018398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_39018966_39019629_39021705_39023303_39023447_39023756_39023932_39025452
48444	chr6	-	1397	7	NNC	ENSMUSG00000039985.15	novel	2785	7	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	833.564967807282	187	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148847963	148822554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148822728_148824003_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
48445	chr11	-	1099	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7899.66008586586	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	10003	False	NA	NA	False	NA	NA	NA	69812150	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807783_69807964_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
48446	chr5	+	1846	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	-24	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	234.364331757202	1	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAGTTTCATACAGACG	NA	False	NA	NA	False	NA	NA	NA	100187878	100216618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100188162_100206998_100207101_100208837_100209027_100210001_100210135_100211617_100211742_100215603
48447	chr14	-	1294	6	NNC	ENSMUSG00000015759.12	novel	789	6	NA	NA	27	-103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	210.694660587306	210	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGCTGTGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47025764	47013126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47013499_47013535_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
48448	chr17	-	2592	5	ISM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	264	-366	208	366	intron_retention	FALSE	canonical	3	79	junction_1	6.22494979899437	11	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAATAATAATAATAGTTAT	5087	False	NA	NA	False	NA	NA	NA	23804942	23794451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411
48449	chr18	-	2266	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	23	0	0	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	1	107	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATGTGTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	38472033	38460610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
48450	chr12	+	2786	15	NNC	ENSMUSG00000044712.16	novel	3032	16	NA	NA	34	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4.65547735337152	1	34	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTATGCTGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73333715	73400819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_73333807_73335166_73335298_73338933_73339008_73356926_73356972_73376786_73376833_73383793_73383879_73384283_73384343_73388181_73388248_73388480_73388535_73390442_73390523_73391566_73391668_73397287_73397413_73398524_73398670_73398852_73398948_73399230
48451	chr2	-	1320	4	Antisense	novelGene_ENSMUSG00000065124.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCCGGGCGCGGCGAGG	NA	False	NA	NA	False	NA	NA	NA	32854049	32851879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_32851980_32852065_32852132_32852583_32852682_32852993
48452	chr7	+	1559	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	-46	6	-46	0	multi-exon	FALSE	canonical	3	158	junction_2	1	600	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	142622939	142624824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142623251_142623491_142623588_142623672
48453	chr1	-	1020	2	NNC	ENSMUSG00000043629.13	novel	3641	2	NA	NA	-276	383	at_least_one_novel_splicesite	TRUE	canonical	3	24	junction_1	0	20	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCATAGCATGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	52992785	52963958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_52964894_52992700
48454	chr4	+	2491	18	NNC	ENSMUSG00000029056.14	novel	2508	19	NA	NA	80	-140	intron_retention	FALSE	canonical	3	19	junction_8	41.999670455125	1	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATATCCCTCATCAGGA	NA	False	NA	NA	False	NA	NA	NA	155048669	155065188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056886_155057027_155059086_155059243_155060718_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063411_155063483_155063948_155064050_155064182_155064252_155064951
48455	chr5	-	2975	3	ISM	ENSMUSG00000042594.17	ENSMUST00000136960.8	4313	7	18168	-4	10084	4	3prime_fragment	FALSE	canonical	3	46	junction_2	8.5	62	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCATGATCTCTGCATCC	NA	False	NA	NA	False	NA	NA	NA	121956720	121953546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_121956157_121956278_121956451_121956527
48456	chr6	-	1735	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	-76	4178	-76	3061	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	1358	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGCCTAGAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	87815856	87795428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
48457	chr2	+	3000	6	FSM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	110	7	-25	-7	multi-exon	FALSE	canonical	3	20	junction_2	6.46838465151849	133	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTATCAGTGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	31840260	31863447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31840394_31840540_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
48458	chr10	+	1809	13	NNC	ENSMUSG00000020111.16	novel	2294	13	NA	NA	7	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	56.6090393252997	39	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCAAGAGCTCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	59538456	59699947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000_59699326_59699793
48459	chr4	+	1509	11	NIC	ENSMUSG00000028671.17	novel	1430	11	NA	NA	-7	-14	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	47.2699693251434	391	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTATCGAGAGGCAGA	4585	False	NA	NA	False	NA	NA	NA	135691060	135695475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693564_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
48460	chr3	-	1530	4	NIC	ENSMUSG00000005779.13	novel	666	5	NA	NA	28	-2	intron_retention	FALSE	canonical	3	1712	junction_2	108.419965361039	38	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGAGTTGGATTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	94794244	94791634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94792345_94792970_94793053_94793385_94793959_94794079
48462	chr16	-	1678	7	FSM	ENSMUSG00000049916.13	ENSMUST00000231681.2	1156	7	3	-525	3	524	multi-exon	FALSE	canonical	3	255	junction_4	26.8824602048746	810	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGCAAAATTACTATATAA	NA	False	NA	NA	False	NA	NA	NA	16943001	16930737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942853
48463	chr11	+	1461	14	NIC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_13	281.900796684929	65	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	80319454	80364074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80363918
48464	chr8	-	354	1	Intergenic	novelGene_1617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTGCAGTGTCGCTGTC	NA	False	NA	NA	False	NA	NA	NA	34392510	34392156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_34392200_34392500
48465	chr10	+	1710	17	NNC	ENSMUSG00000040675.18	novel	3669	28	NA	NA	32	-7156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	104.917657445017	1	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAGAAAAATAACCATTGG	NA	False	NA	NA	False	NA	NA	NA	3923175	3991795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966817_3968535_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772
48466	chr2	-	1510	5	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	594.803538994179	4	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGCCTGTCCAATTCCTTC	NA	False	NA	NA	False	NA	NA	NA	25114669	25112169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25112929_25112973_25113381_25113945_25114057_25114135_25114245_25114545
48467	chr2	-	3285	3	Antisense	novelGene_ENSMUSG00000027203.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGACGAGCCCACCGCG	6584	False	NA	NA	False	NA	NA	NA	125094306	125089602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_125089809_125091078_125092619_125092767
48468	chr10	-	1150	1	Genic_Genomic	ENSMUSG00000093674.8	novel	NA	NA	NA	NA	0	110	mono-exon	FALSE	NA	NA	NA	NA	NA	541	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGGTTAAGTTACAGAGT	NA	False	NA	NA	False	NA	NA	NA	128385022	128383872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_128383900_128385000
48469	chrX	-	2273	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	27	213	intron_retention	FALSE	canonical	3	293	junction_4	71.5276455759076	5	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTTTGTGGTTGATTC	NA	False	NA	NA	False	NA	NA	NA	72161281	72151801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72152123_72152218_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
48470	chr11	+	2878	16	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	3	-6	intron_retention	FALSE	canonical	3	36	junction_1	13.1656117720877	170	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGTGTGGATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	119246421	119271899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119246466_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
48472	chr12	-	5322	17	FSM	ENSMUSG00000021180.10	ENSMUST00000222731.2	5642	17	295	25	203	-25	multi-exon	TRUE	canonical	3	13	junction_6	9.17196816392207	26	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAAGAAAATCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	100691084	100514722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_100517943_100519259_100519424_100520532_100520693_100524707_100524900_100537087_100537259_100540689_100540784_100541381_100541516_100541893_100542020_100543980_100544143_100547554_100547706_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
48473	chr10	+	2208	9	FSM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	82	0	-18	0	multi-exon	FALSE	canonical	3	83	junction_5	28.5938695352693	571	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAGTCCTAGAAATGGT	NA	False	NA	NA	False	NA	NA	NA	77095133	77105409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017_77103142_77104360
48474	chr6	-	1123	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	105	0	105	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471649	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
48475	chr9	+	1036	7	ISM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	-3	754	-3	154	intron_retention	FALSE	canonical	3	687	junction_5	75.2898104364432	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCCCTGTCCCACC	2366	False	NA	NA	False	NA	NA	NA	21323129	21330816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586
48476	chr16	+	1442	7	NIC	ENSMUSG00000022871.14	novel	1520	8	NA	NA	-138	-3	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	163.643582893501	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTTCTTGGCTTCAAC	NA	False	NA	NA	False	NA	NA	NA	22736945	22758499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22737341_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
48481	chr7	+	3174	29	FSM	ENSMUSG00000040940.19	ENSMUST00000117419.8	3214	29	5	35	5	-32	multi-exon	FALSE	canonical	3	251	junction_1	33.6220742600902	83	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGTTTATTTTTAATATA	9929	False	NA	NA	False	NA	NA	NA	24603836	24625982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616225_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
48482	chr11	+	583	4	Antisense	novelGene_ENSMUSG00000091228.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGGCAAGAAGTGTAG	NA	False	NA	NA	False	NA	NA	NA	93840640	93846451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_93840872_93842724_93842837_93843623_93843732_93846319
48483	chr17	+	2527	15	NNC	ENSMUSG00000024312.11	novel	2229	15	NA	NA	16	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	103.524841739279	23	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGACGTGTCTGGACCA	1995	False	NA	NA	False	NA	NA	NA	34159649	34168664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34159734_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162915_34163091_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
48484	chr11	+	1780	9	NNC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	184.266790279746	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68936449	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68936497_68936694_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
48485	chr18	+	1531	8	NNC	ENSMUSG00000042705.10	novel	1610	7	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	484.581915317794	26	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGCGTACAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	47091916	47221061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094_47220845_47220888
48486	chr2	-	2155	11	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-37	-9	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	199.665119637858	2	79	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAACTCCCCTTTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	165726605	165669110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669852_165670610_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527
48487	chr12	-	2275	2	NNC	ENSMUSG00000021127.8	novel	2990	2	NA	NA	2445	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTCAAGAAATGATTTG	NA	False	NA	NA	False	NA	NA	NA	80157323	80154540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_80155891_80156398
48488	chr19	+	1228	8	Antisense	novelGene_ENSMUSG00000024982.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGGGGCCAACAGGAGG	356	False	NA	NA	False	NA	NA	NA	55286769	55300115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_55287317_55290985_55291037_55291122_55291267_55292126_55292171_55292841_55293012_55297338_55297390_55298174_55298337_55300056
48489	chr1	+	3329	10	NIC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	0	-16670	combination_of_known_splicesites	FALSE	canonical	3	115	junction_5	526.753602763846	6	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCATGCAAAGCGTTCTGC	NA	False	NA	NA	False	NA	NA	NA	118555674	118596228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845
48490	chr11	-	2465	5	FSM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	-1	-97	-1	97	multi-exon	FALSE	canonical	3	337	junction_4	13.2382022948737	145	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAACAATGCCAGGGGAA	NA	False	NA	NA	False	NA	NA	NA	51541670	51533792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51541504
48492	chr11	+	2563	10	FSM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	29	-8	29	8	multi-exon	FALSE	canonical	3	18	junction_4	6.35959467611297	88	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGGACAGATGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	100306551	100315658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100306852_100311225_100311372_100311716_100311907_100312019_100312166_100312469_100312660_100312769_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
48495	chr6	+	1401	10	NIC	ENSMUSG00000030079.16	novel	1675	11	NA	NA	63	-12	combination_of_known_splicesites	FALSE	canonical	3	38	junction_7	404.321318254506	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATACTTCTCTGTAGGTT	NA	False	NA	NA	False	NA	NA	NA	88442453	88474542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88468497_88468601_88473389_88473482_88474209
48496	chr14	-	2417	17	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	49	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	254.984772829673	1	119	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCCTCTGCTGCTTTACC	4908	False	NA	NA	False	NA	NA	NA	54754769	54744659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752234_54752345_54752801_54752895_54753562_54753649_54753953_54754073_54754703
48497	chr4	-	1812	10	ISM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	279	-8	-54	0	3prime_fragment	TRUE	canonical	0	0	junction_5	318.755914977798	363	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9849	False	NA	NA	False	NA	NA	NA	117146364	117128660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222
48498	chr11	-	2384	3	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44254	-14	intron_retention	FALSE	canonical	3	52	junction_2	289.5	339	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCACTTCTGAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	87922613	87870364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87872397_87874697_87874837_87922400
48499	chr14	+	3858	2	NNC	ENSMUSG00000021900.11	novel	2324	4	NA	NA	23175	-397	intron_retention	FALSE	canonical	0	0	junction_1	0	4	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAATCCGCAGAATACTG	NA	False	NA	NA	False	NA	NA	NA	31386188	31390139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31389855_31389947
48500	chr17	-	1088	1	Intergenic	novelGene_155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACTTAGGGTCTTGTAC	NA	False	NA	NA	False	NA	NA	NA	36154875	36153787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_36153800_36154900
48501	chr4	-	2126	3	FSM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	7	529	7	44	multi-exon	FALSE	canonical	3	76	junction_1	2.5	164	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGTCAGGTGCCTAA	NA	False	NA	NA	False	NA	NA	NA	155953890	155949708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155951343_155951569_155951795_155953623
48502	chr1	-	1508	12	FSM	ENSMUSG00000013593.13	ENSMUST00000111318.8	1545	12	26	11	26	-11	multi-exon	FALSE	canonical	1	10	junction_7	412.075336127544	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAGCTCAGCTTGTAAT	NA	False	NA	NA	False	NA	NA	NA	171074665	171062432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
48503	chr15	+	3065	14	Antisense	novelGene_ENSMUSG00000009733.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	40	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTCGGCGCAGACTCGA	NA	False	NA	NA	False	NA	NA	NA	100400684	100449858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_100402325_100404086_100404139_100409575_100409719_100410089_100410217_100410962_100411052_100411908_100412001_100416463_100416562_100418443_100418591_100420261_100420377_100423447_100423554_100425757_100425835_100426274_100426428_100449205_100449365_100449791
48504	chr3	+	3399	8	NNC	ENSMUSG00000037730.14	novel	3474	8	NA	NA	-5	-17	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_4	72.8873886798768	1	122	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAACTGAAAAAGAAATTA	8774	False	NA	NA	False	NA	NA	NA	30656774	30672633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663218_30665589_30665769_30666617_30666702_30667700_30667788_30670699
48505	chr10	-	2426	14	NNC	ENSMUSG00000020076.8	novel	2535	15	NA	NA	-13	-52	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	95.7950845547519	1	124	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGGCTATACCTTTGAA	8138	False	NA	NA	False	NA	NA	NA	62486965	62451845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62452292_62457128_62457303_62460546_62460707_62460923_62460998_62461956_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
48506	chr1	-	1235	6	NIC	ENSMUSG00000058076.13	novel	3171	6	NA	NA	1	243	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	366.673369635702	84	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACTCTTTGGAATCT	472	False	NA	NA	False	NA	NA	NA	170978156	170956732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978048
48507	chr5	-	2858	8	NNC	ENSMUSG00000029575.18	novel	3020	9	NA	NA	57	-24	at_least_one_novel_splicesite	TRUE	canonical	2	7	junction_2	89.2748564826626	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTACATAAATCAGTGCCT	NA	False	NA	NA	False	NA	NA	NA	114581996	114569118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114571420_114573338_114573399_114574479_114574605_114574770_114574869_114575878_114575937_114576581_114576676_114580821_114580884_114581936
48508	chr2	-	1445	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	67	1030	-37	-1022	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	1	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAATTCTTTGAAGTCGAT	3699	False	NA	NA	False	NA	NA	NA	154734788	154714359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
48510	chr17	-	2327	2	NNC	ENSMUSG00000040888.11	novel	1177	4	NA	NA	3	-11	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGACTTAGGGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	24915061	24912174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24912587_24913146
48511	chr9	-	2370	18	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	-3	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	871.318592688919	1	108	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTAAATGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	36678918	36643988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645725_36646648_36646859_36652827_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659242_36659377_36660848_36661030_36662477_36662643_36663639_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674628_36674694_36676349_36676464_36678867
48512	chr16	-	1129	5	NNC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	-16	455	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	143.053311740763	2	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGGCCTGTGAAGGGT	NA	False	NA	NA	False	NA	NA	NA	10810951	10778232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10778850_10781216_10781278_10784288_10784514_10793290_10793475_10810909
48513	chr14	+	4994	15	NNC	ENSMUSG00000034205.17	novel	5316	14	NA	NA	111	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.68426087465023	13	34	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTATTCTGGCTCGTCTC	6148	False	NA	NA	False	NA	NA	NA	69846627	69933277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_69846744_69871332_69871740_69882144_69882321_69898087_69898300_69901348_69901572_69904715_69904900_69910830_69910983_69913124_69913293_69915261_69915425_69919543_69919788_69926476_69926593_69927582_69927720_69929762_69929875_69930488_69932947_69933151
48514	chr8	-	3108	9	FSM	ENSMUSG00000002346.17	ENSMUST00000063788.8	3081	9	-24	-3	-24	3	multi-exon	TRUE	non_canonical	0	0	junction_1	10.6389614154766	45	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCTTACTTCTTCAACT	NA	False	NA	NA	False	NA	NA	NA	70664930	70636986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70637876_70637941_70639427_70640949_70641102_70641482_70641600_70642060_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
48515	chr12	+	2296	17	NIC	ENSMUSG00000021177.17	novel	2036	16	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	153.9589915976	1	92	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	NA	False	NA	NA	NA	99850778	99921478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_99850812_99852736_99852980_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
48519	chr14	-	1370	5	NNC	ENSMUSG00000021792.16	novel	1537	6	NA	NA	330	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	141.345321818587	1	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCTGTGCACAAGTTT	NA	False	NA	NA	False	NA	NA	NA	40726160	40715691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40716595_40719669_40719741_40720800_40720942_40724392_40724485_40725997
48520	chr4	-	1950	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	0	2	0	0	multi-exon	FALSE	canonical	3	185	junction_11	29.3189922368611	469	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	130068595	130059396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
48521	chr17	+	2602	14	NNC	ENSMUSG00000034709.9	novel	279	2	NA	NA	-20305	1162	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	25.3948697237065	11	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTGTCCAGTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	88817240	88874380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88817439_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873375_88873450
48522	chr9	+	1295	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	8	13	0	1	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	1758	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTTTTCATTTAAGC	2377	False	NA	NA	False	NA	NA	NA	21323140	21331557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
48524	chr2	-	1843	10	FSM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	-35	299	-35	-299	multi-exon	FALSE	canonical	3	9	junction_8	29.1890390386528	391	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGCTGTGAAGACTTGCT	5212	False	NA	NA	False	NA	NA	NA	167082559	167045125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
48525	chr18	-	2921	12	ISM	ENSMUSG00000024533.18	ENSMUST00000224799.2	2059	14	18781	-1130	18781	-1086	3prime_fragment	FALSE	canonical	3	74	junction_9	9.52335103186022	28	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTTAGTAGTTCATCT	5684	False	NA	NA	False	NA	NA	NA	67663541	67622929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_67624620_67628209_67628347_67628432_67628461_67629631_67629703_67630246_67630385_67636500_67636644_67638720_67638815_67639623_67639797_67652360_67652491_67652873_67652961_67661933_67662099_67663476
48526	chr3	-	1466	5	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	292.925225100195	2	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTATTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	90398301	90395676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90396018_90396104_90396901_90397460_90397580_90397854_90397902_90398138
48527	chr7	-	1969	5	ISM	ENSMUSG00000036427.6	ENSMUST00000205870.2	933	8	1046	-68	-588	21	intron_retention	FALSE	canonical	3	1947	junction_3	140.360918706027	4	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACTGAGTCAGTACTTT	NA	False	NA	NA	False	NA	NA	NA	33906277	33901562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992
48528	chr17	-	2925	14	NIC	ENSMUSG00000005823.10	novel	2064	17	NA	NA	254	30	intron_retention	FALSE	canonical	3	88	junction_10	33.5624473157499	4	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCGGAGCCCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	57554409	57541913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763
48529	chr8	-	1383	8	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	35	-85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	909.417822296333	2	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTGTAACTAGCATTCTT	NA	False	NA	NA	False	NA	NA	NA	108315055	108307097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307567_108307638_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
48530	chr1	-	1619	6	FSM	ENSMUSG00000026049.12	ENSMUST00000147571.8	1360	6	-69	-190	2	-4	multi-exon	FALSE	canonical	3	149	junction_5	107.444125013888	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACAATGGTGCCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	44141591	44125779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059
48531	chr2	+	2071	4	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-8	0	intron_retention	FALSE	canonical	3	85	junction_1	38.262252939418	47	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	135	True	NA	NA	NA	119857976	119863075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_119858058_119860538_119861354_119861787_119862482_119862594
48533	chr7	+	1398	7	NNC	ENSMUSG00000025439.6	novel	1504	7	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	446.938350210506	30	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	97345868	97368086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97346077_97354873_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
48535	chr9	+	1039	5	FSM	ENSMUSG00000025785.6	ENSMUST00000214741.2	1107	5	68	0	68	0	multi-exon	FALSE	canonical	3	1267	junction_1	78.9600373606801	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGTGTTGTTAGCATCT	5499	False	NA	NA	False	NA	NA	NA	122956577	122965192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
48536	chr17	+	1292	8	Antisense	novelGene_ENSMUSG00000002658.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	9	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGCTGCCACACCGAGA	7366	False	NA	NA	False	NA	NA	NA	57311337	57318327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_57311429_57311509_57311822_57312360_57312544_57313984_57314159_57314713_57314906_57316686_57316760_57317974_57318022_57318107
48537	chr11	-	2581	21	Antisense	novelGene_ENSMUSG00000098942.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.435889894354067	1	96	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGGAGGTTTTCAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	46031020	45946871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_45947037_45951746_45951834_45955836_45955910_45984689_45984767_45990677_45990755_46003581_46003776_46004448_46004514_46009244_46009317_46012244_46012406_46013916_46014003_46015832_46015974_46018071_46018249_46019610_46019701_46022445_46022643_46025250_46025359_46027069_46027289_46028190_46028258_46028358_46028476_46029667_46029800_46030516_46030603_46030830
48538	chr2	+	1478	8	FSM	ENSMUSG00000027331.16	ENSMUST00000110842.8	925	8	-24	-529	-23	45	multi-exon	FALSE	canonical	3	391	junction_2	12.6813377263841	1134	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGTGGTGGCTCATAT	NA	False	NA	NA	False	NA	NA	NA	118644689	118665168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
48539	chr7	+	2806	18	FSM	ENSMUSG00000030374.16	ENSMUST00000108495.9	3082	18	276	0	215	0	multi-exon	FALSE	canonical	3	350	junction_8	55.9168933502007	231	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAGGTTTTCCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	16550517	16574852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_16550560_16556420_16556525_16556930_16557005_16558063_16558143_16560388_16560587_16562599_16562742_16564250_16564411_16564949_16565064_16565410_16565506_16566850_16567027_16567102_16567151_16567799_16567922_16571486_16571658_16571773_16571915_16572194_16572294_16572487_16572575_16573665_16573898_16574130
48540	chr15	+	1314	10	Antisense	novelGene_ENSMUSG00000022466.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTGCCCTGCTGACCA	717	False	NA	NA	False	NA	NA	NA	97572996	97589085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_97573261_97576266_97576367_97576949_97577049_97578215_97578403_97579499_97579721_97581707_97581806_97581912_97581985_97584322_97584445_97585991_97586123_97589065
48541	chr19	+	2906	3	ISM	ENSMUSG00000024829.13	ENSMUST00000154785.2	604	4	-418	5	-418	-5	intron_retention	FALSE	canonical	3	1812	junction_2	30.5	11	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAGACTGAGCCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	3336392	3341190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_3337039_3337702_3337756_3338983
48542	chrX	-	1970	4	ISM	ENSMUSG00000039201.11	ENSMUST00000143984.2	2184	5	1624	-10	1624	2	3prime_fragment	FALSE	canonical	3	5	junction_3	63.2999912234503	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGGTATGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	8040506	8020719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_8022306_8022554_8022744_8022889_8023018_8040439
48543	chr11	+	2657	10	Intergenic	novelGene_2522	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	108	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCAGCACACGTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	113135679	113456592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_113137319_113138545_113138708_113141296_113141392_113196709_113196781_113260553_113260727_113354799_113354925_113414294_113414449_113450334_113450379_113452835_113452953_113456515
48544	chr12	-	1835	7	Antisense	novelGene_ENSMUSG00000060073.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAAGCGCCGCTCCTACG	NA	False	NA	NA	False	NA	NA	NA	71036520	71021485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_71021541_71025505_71025588_71030090_71030216_71031265_71031369_71031445_71031514_71033630_71033710_71035197
48545	chr9	+	1511	9	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	372.686195075696	19	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGAGTGGCTTTTC	603	False	NA	NA	False	NA	NA	NA	45281717	45307453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301931_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306970_45307011
48546	chr11	-	1300	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	3	5	3	-5	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	682	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGTGTGTGATCTGGGC	NA	False	NA	NA	False	NA	NA	NA	121095534	121068421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
48547	chr11	-	1158	6	FSM	ENSMUSG00000018761.15	ENSMUST00000125389.2	646	6	-64	-448	5	-17	multi-exon	FALSE	canonical	3	53	junction_3	239.282761602252	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTAATTGTACAAAATTG	6821	False	NA	NA	False	NA	NA	NA	69553408	69547539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69549391_69549525_69549636_69549703_69553294
48548	chrX	+	1663	8	NNC	ENSMUSG00000031349.5	novel	2168	8	NA	NA	68	-386	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	137.428274427953	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCCACAGACTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	71962230	72001734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992906_71996487_71996578_71998677_71998821_71999942_72000046_72000887
48549	chr16	+	2613	8	FSM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	-12	-779	-12	779	multi-exon	FALSE	canonical	3	61	junction_7	9.64682458064808	10	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAATTTTCTAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	43710249	43760709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276
48550	chr2	+	2385	4	Intergenic	novelGene_2598	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	57	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTAATGAACTTCCGGGAC	140	False	NA	NA	False	NA	NA	NA	30364423	30383835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_30364487_30366380_30366449_30368924_30368978_30381634
48551	chr17	+	2062	7	NNC	ENSMUSG00000034681.18	novel	1816	8	NA	NA	0	-11	intron_retention	FALSE	non_canonical	0	0	junction_6	522.141317610047	1	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAGAATGCAAATTGAGT	932	False	NA	NA	False	NA	NA	NA	24633667	24644858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24641278_24643375_24643514_24644059
48552	chr10	+	1875	3	Antisense	novelGene_ENSMUSG00000090841.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGACGCCCTACCCAACCC	3993	False	NA	NA	False	NA	NA	NA	128326733	128329723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128326905_128327929_128328012_128328101
48553	chr15	+	483	1	ISM	ENSMUSG00000084915.3	ENSMUST00000136218.2	1886	4	10	8119	-6	-1185	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACACAATGTATCAAATT	4680	False	NA	NA	False	NA	NA	NA	89360448	89360931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_89360400_89360900
48554	chr14	-	1413	3	ISM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	2839	-39	-526	0	3prime_fragment	FALSE	canonical	3	187	junction_2	0.5	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTAAGTGGTTCTGCT	4727	False	NA	NA	False	NA	NA	NA	70677891	70676196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70677019_70677157_70677311_70677453
48555	chr11	+	940	1	ISM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	31770	267	13035	-267	mono-exon	FALSE	NA	NA	NA	NA	NA	2	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3243	False	NA	NA	False	NA	NA	NA	75655464	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75655500_75656400
48556	chr16	+	1843	8	NIC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	-80	-2	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	59.2149319282333	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGATTGTGGCCGAATC	NA	False	NA	NA	False	NA	NA	NA	8455457	8475393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_8455693_8460601_8460714_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
48557	chr2	-	2493	17	NNC	ENSMUSG00000027620.17	novel	2810	17	NA	NA	61	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1103.23971074966	1	128	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTCTGAAAAAGGCCACA	NA	False	NA	NA	False	NA	NA	NA	156022001	155989184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990271_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003539_156003747_156003890_156004675_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014787_156014943_156019255_156019306_156021096_156021166_156021854
48559	chr7	+	2688	6	NNC	ENSMUSG00000042178.7	novel	3834	6	NA	NA	1327	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	38.6471214969498	94	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGCTGTGTGGGGTCG	NA	False	NA	NA	False	NA	NA	NA	127837855	127844268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127837947_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
48560	chr17	-	1929	6	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	395	3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	36.4	1	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGCCCTTGGCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	23818066	23794822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_23796137_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23818015
48561	chr19	+	662	6	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	154	5852	154	-9	5prime_fragment	FALSE	canonical	3	5201	junction_1	1472.44889894353	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTGATGGTAAGTCTGAA	997	False	NA	NA	False	NA	NA	NA	8944558	8949991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870
48562	chr4	+	1402	1	Intergenic	novelGene_2143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGTGTATAATGGTATT	NA	False	NA	NA	False	NA	NA	NA	147479721	147481123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_147479700_147481100
48563	chr11	-	1907	3	NNC	ENSMUSG00000020922.12	novel	488	4	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	459.5	1	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCATCACTGATGTCTCA	6396	False	NA	NA	False	NA	NA	NA	102076082	102053331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054994_102056185_102056243_102075894
48564	chr4	-	1324	7	NNC	ENSMUSG00000028857.17	novel	1484	6	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	286.536016739413	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	133005089	132993355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132993981_132994126_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
48565	chr19	+	2592	3	ISM	ENSMUSG00000024948.16	ENSMUST00000137095.8	1458	9	6243	-1736	17	-36	3prime_fragment	FALSE	canonical	3	31	junction_2	2	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCACAAACCACACTGCAAT	1126	False	NA	NA	False	NA	NA	NA	6402821	6405606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6403221_6403307_6403364_6403469
48566	chr15	-	2802	9	FSM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	43	-5	-11	5	multi-exon	FALSE	canonical	3	33	junction_8	4.64858849544676	108	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTCTATGTTTTATGCT	NA	False	NA	NA	False	NA	NA	NA	94441385	94420563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394_94434555_94437933_94438856_94441340
48568	chr4	-	559	4	NIC	ENSMUSG00000073779.8	novel	3078	3	NA	NA	5	-652	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	1.63299316185545	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGCACCTCCAGAGACC	4063	False	NA	NA	False	NA	NA	NA	107680166	107665836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_107666035_107667959_107668144_107673123_107673265_107680130
48569	chr4	-	572	1	ISM	ENSMUSG00000073779.8	ENSMUST00000097930.2	2991	2	4336	8	4336	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACCCCACCTGTGTCCCT	NA	False	NA	NA	False	NA	NA	NA	107663809	107663237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_107663200_107663800
48570	chr11	+	1595	9	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	18	13	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	43.1434743037693	328	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCGTCATGTCTTGGTC	7136	False	NA	NA	False	NA	NA	NA	4168242	4172422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4168453_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
48571	chr17	-	2258	15	NNC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.690806909127	1	106	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTGTTAAGTCCTAAAA	NA	False	NA	NA	False	NA	NA	NA	32540110	32523977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32524681_32525459_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534754_32535160_32535642_32536040_32536200_32536281_32536321_32536819_32536853_32537744_32537784_32540067
48572	chr10	-	2592	14	NNC	ENSMUSG00000038302.15	novel	2552	14	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	23.5452478904948	91	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCATTGAGCTTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	42354411	42188586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42272137_42272373_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
48573	chr11	-	1926	8	NNC	ENSMUSG00000018659.13	novel	1994	7	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	68.3388914281806	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAATGTTTAACTTGAT	NA	False	NA	NA	False	NA	NA	NA	96834822	96828655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556_96834627_96834699
48574	chr13	-	2706	3	FSM	ENSMUSG00000069184.5	ENSMUST00000091481.3	1629	3	-527	-550	-527	550	multi-exon	FALSE	canonical	3	29	junction_1	7	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGTTTTCCACTTTA	NA	False	NA	NA	False	NA	NA	NA	74525212	74518994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74520947_74523086_74523183_74524554
48575	chr7	+	3423	5	NIC	ENSMUSG00000037463.15	novel	1946	6	NA	NA	-20	-6	intron_retention	FALSE	canonical	3	31	junction_1	13.6656503687164	230	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTAAACTGGTTCATAT	8825	False	NA	NA	False	NA	NA	NA	28392253	28398754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28392398_28392694_28393076_28394155_28394268_28394430_28394527_28396064
48576	chr4	+	1171	7	NNC	ENSMUSG00000054405.15	novel	1401	9	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1146.072096336	41	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGATGGTCTCCTCCT	2358	False	NA	NA	False	NA	NA	NA	132262887	132281048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132278879_132278922_132280327
48577	chr12	-	1556	3	ISM	ENSMUSG00000020948.10	ENSMUST00000021331.9	2024	5	11555	-505	11555	505	3prime_fragment	FALSE	canonical	3	14	junction_1	3.5	3	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGATAGTGGATGTAAATA	NA	False	NA	NA	False	NA	NA	NA	64998589	64989480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_64990388_64996787_64996997_64998149
48578	chr12	-	979	1	ISM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	25684	39	23520	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATGTGAAGAGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	64986624	64985645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_64985600_64986600
48579	chr4	+	2326	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14326	664	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	39.6007856263259	1	138	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTGTTTCACATTATAG	NA	False	NA	NA	False	NA	NA	NA	145158983	145178122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145173065_145173342_145176036_145176256_145176339
48580	chr14	-	1427	5	NNC	ENSMUSG00000021811.8	novel	1631	5	NA	NA	17	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	422.006516537363	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAAGTACAGCAGGATT	NA	False	NA	NA	False	NA	NA	NA	20438927	20434721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438414_20438713
48581	chr12	+	1538	14	NNC	ENSMUSG00000021115.16	novel	1742	15	NA	NA	-30	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	380.790955091228	2	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTACTTTACTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	105976456	106041447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976618_106002798_106002964_106009095_106009126_106018023_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
48582	chr10	-	1428	9	NIC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	8	6	combination_of_known_splicesites	FALSE	canonical	3	32	junction_7	393.075374451262	30	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTTTTACCCAGTGTGA	6574	False	NA	NA	False	NA	NA	NA	40123015	40099235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40120580_40120714_40122948
48583	chrX	+	1319	2	Antisense	novelGene_ENSMUSG00000002015.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCCAGGTGAGGGCCT	NA	False	NA	NA	False	NA	NA	NA	72731471	72733556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72732386_72733151
48585	chr2	+	2234	15	NNC	ENSMUSG00000016253.13	novel	2279	15	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	157.154691112851	2	95	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGATATTTTACTCATTT	NA	False	NA	NA	False	NA	NA	NA	174257634	174269292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267051_174267713_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
48586	chr2	+	1894	12	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-18	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	936.674273274801	1	90	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTATTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	130116331	130121230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118783_130118951_130119053_130119395_130119536_130119761_130119891_130120075_130120211_130120816
48587	chr17	-	2619	17	NNC	ENSMUSG00000003546.11	novel	2322	16	NA	NA	248	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_16	32.0511675879366	101	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTCGGAGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	46956700	46941552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006_46956080_46956416
48588	chr2	-	1692	1	ISM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	26990	154	26847	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTATGTGTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	125674069	125672377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_125672400_125674100
48589	chr17	+	2502	1	Genic_Genomic	ENSMUSG00000043311.8	novel	NA	NA	NA	NA	-35	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	49	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGTCTAATGTGAGAGG	2132	False	NA	NA	False	NA	NA	NA	35345313	35347815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_35345300_35347800
48590	chr2	+	3177	19	Antisense	novelGene_ENSMUSG00000081476.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	130	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAGAAAGCAATATATAAG	NA	False	NA	NA	False	NA	NA	NA	94158282	94216528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_94158830_94160861_94161017_94163137_94163397_94172972_94173141_94189093_94189282_94192689_94192909_94193044_94193123_94194610_94194781_94194923_94195038_94196873_94197012_94199655_94199774_94202085_94202240_94204858_94205003_94205426_94205586_94206424_94206485_94207945_94208077_94208337_94208450_94209032_94209206_94216438
48591	chrX	+	1514	10	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-7	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	962.717565598089	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543409	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161552889_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
48592	chr8	-	2879	8	Antisense	novelGene_ENSMUSG00000031842.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	88	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGAGCCAGGTGAGTTA	NA	False	NA	NA	False	NA	NA	NA	71203598	71199181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_71199292_71199433_71199526_71199862_71200021_71200106_71200212_71200460_71200623_71200700_71200805_71201014_71202057_71202492
48593	chr3	-	1640	12	NNC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	1	-144	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	95.5397022747287	1	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCCAGCTCGGCTGCAGA	NA	False	NA	NA	False	NA	NA	NA	96634769	96618982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_96619377_96620796_96620871_96622435_96622587_96622949_96623011_96623744_96623793_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96634664
48594	chr17	+	2371	8	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	225.638594903895	1	105	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTGTATTCTTTCCTTTA	5668	False	NA	NA	False	NA	NA	NA	34128517	34134556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131241_34131561_34131782_34132246_34132701_34132816_34133037_34134316
48596	chr7	-	1256	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	14	72	14	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACTTTTCCTGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	116425072	116423816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_116423800_116425100
48597	chr8	+	793	5	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	61	5	intron_retention	FALSE	canonical	3	17818	junction_4	2064.50448049889	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAAAGCTGGGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	123829149	123831975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123829185_123829391_123829726_123829921_123830096_123830636_123830694_123831782
48598	chr3	+	3377	9	NNC	ENSMUSG00000049504.13	novel	4472	13	NA	NA	6350	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	18.3809514171601	1	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACTATAGAAGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	53377702	53389176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_53377789_53378844_53378939_53379396_53379508_53380904_53380989_53382108_53382188_53382735_53382806_53385129_53386588_53386980_53387132_53387932
48599	chr1	-	2097	12	FSM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	-2	2154	-2	-3	multi-exon	FALSE	canonical	3	133	junction_7	20.1461601451751	373	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGATGTACAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	93563446	93549626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
48601	chrX	+	1229	1	ISM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	11694	0	9761	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	141021459	141022688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_141021500_141022700
48603	chr18	+	1464	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	299	6326	-167	-93	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAACTTCATCTGAATGG	NA	False	NA	NA	False	NA	NA	NA	76374949	76437708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
48605	chr5	+	2621	8	NNC	ENSMUSG00000049327.18	novel	2739	8	NA	NA	-6	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	318.850550367077	400	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGGCAAGGCCACCTATG	NA	False	NA	NA	False	NA	NA	NA	124578041	124600357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124578079_124584031_124584093_124585276_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
48606	chr8	-	1806	10	NNC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	40	426	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	40.0927936014121	185	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCGAAGTTAAAATGTTG	NA	False	NA	NA	False	NA	NA	NA	27713816	27687060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_27687710_27687955_27688099_27688413_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
48607	chr3	+	927	7	NNC	ENSMUSG00000005687.15	novel	1467	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1424.08868520655	31	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTTTATGTGTGGCTAT	5023	False	NA	NA	False	NA	NA	NA	103079064	103086141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084744_103085797
48609	chr2	-	1588	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	-13	39	-13	-39	multi-exon	TRUE	canonical	3	32	junction_1	7.52953368748825	355	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGCTCTGCTCATTTTA	NA	False	NA	NA	False	NA	NA	NA	76478372	76460280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
48610	chr15	+	1549	4	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2898	-5089	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	84	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGACACCGGGTCTCGGTT	NA	False	NA	NA	False	NA	NA	NA	98829307	98832254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98830446_98830575_98830722_98830853_98831079_98832214
48611	chr5	+	1666	3	FSM	ENSMUSG00000047635.7	ENSMUST00000077376.3	1677	3	7	4	7	-4	multi-exon	FALSE	canonical	3	74	junction_1	7.5	332	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTTCATCGAGGAAGCT	5405	False	NA	NA	False	NA	NA	NA	124466167	124479903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124466293_124476689_124476999_124478671
48612	chr2	+	1658	1	Intergenic	novelGene_2689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCTATCTTCAAACTCTC	4581	False	NA	NA	False	NA	NA	NA	119245220	119246878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_119245200_119246900
48613	chr2	+	699	1	Intergenic	novelGene_2690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTGCTTGTTGTTCTGT	9382	False	NA	NA	False	NA	NA	NA	119250021	119250720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_119250000_119250700
48614	chr7	-	1737	7	NNC	ENSMUSG00000019370.11	novel	2290	6	NA	NA	-131	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	904.017453125522	2771	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTCTGGACTCTTCCG	NA	False	NA	NA	False	NA	NA	NA	16657885	16649307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16649935_16650329_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
48618	chr2	-	3925	2	Antisense	novelGene_ENSMUSG00000070544.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	41	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGATGGGAACAATGGAA	NA	False	NA	NA	False	NA	NA	NA	160498150	160490560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_160492942_160496606
48619	chr18	-	2230	7	NNC	ENSMUSG00000052102.16	novel	2289	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	473.12882906127	2	142	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	NA	False	NA	NA	NA	38471993	38460602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_38462027_38463538_38463710_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
48621	chr5	+	3399	26	FSM	ENSMUSG00000037890.14	ENSMUST00000204647.3	3381	26	-20	2	1	-2	multi-exon	FALSE	canonical	3	27	junction_5	5.73606136647787	32	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGATTGCATGCCCCCT	8551	False	NA	NA	False	NA	NA	NA	65357039	65401927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462
48622	chr4	-	3351	18	Antisense	novelGene_ENSMUSG00000028614.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	122	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAAGGCAGGAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	107272546	107225226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_107225346_107225953_107226073_107228456_107228558_107231340_107231517_107232272_107232412_107237792_107237903_107238870_107238925_107240781_107240916_107241980_107242082_107243796_107243875_107246642_107246802_107247416_107247656_107247741_107247861_107250335_107250397_107252197_107252256_107252930_107253028_107268260_107268424_107271222
48623	chr15	+	2473	8	Antisense	novelGene_ENSMUSG00000022195.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	107	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGCGGAAACGCGCGCTCA	NA	False	NA	NA	False	NA	NA	NA	12809526	12824716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_12810929_12812016_12812153_12814272_12814347_12815939_12815948_12817978_12818365_12821481_12821638_12823645_12823795_12824554
48624	chr2	-	402	3	FSM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	16	3	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1326.5	23515	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGGTTTTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	174305882	174302867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_174303015_174304292_174304423_174305757
48625	chr2	-	1034	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-2	-1019	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4408.33670270035	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGAAGTCGATCTG	3757	False	NA	NA	False	NA	NA	NA	154734730	154714356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714500_154715503_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
48626	chr11	+	913	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-36	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTGGACAGTCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653942_120654412_120654957_120655162
48627	chr3	-	1844	5	ISM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	386	2	-101	-2	3prime_fragment	FALSE	canonical	3	57	junction_4	12.9687123493429	81	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTATCCAGAGGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	86906362	86903142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939
48628	chr10	+	3047	6	NNC	ENSMUSG00000019845.9	novel	3525	4	NA	NA	-749	94	intron_retention	FALSE	non_canonical	0	0	junction_1	65.9860591337291	5	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAGCAAATGTGTAAAC	NA	False	NA	NA	False	NA	NA	NA	39018390	39026187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_39018961_39019640_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
48629	chr13	+	1081	5	NIC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	415	-3735	combination_of_known_splicesites	TRUE	canonical	3	22	junction_4	636.728896391549	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGACTGGATTATTGTA	NA	False	NA	NA	False	NA	NA	NA	92491648	92521826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92521232
48632	chr7	-	3251	5	Antisense	novelGene_ENSMUSG00000109257.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	111	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGCGGGGGGGCGGGGGG	NA	False	NA	NA	False	NA	NA	NA	92487600	92390872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_92391048_92469187_92469287_92473000_92473088_92478731_92478916_92484894
48633	chr19	-	457	3	Intergenic	novelGene_1197	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGAGTGCATAGCGGCA	NA	False	NA	NA	False	NA	NA	NA	5543731	5542778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_5542830_5543176_5543253_5543401
48635	chr14	+	2252	5	NNC	ENSMUSG00000021806.5	novel	3976	17	NA	NA	-13	-35607	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	630.287434429721	23	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTTTCGCCTTGATGA	NA	False	NA	NA	False	NA	NA	NA	19801319	19820591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19819923
48636	chr3	-	1605	11	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	-3178	-124	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	256.409048202282	1	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAACTTTCTGACACGGT	NA	False	NA	NA	False	NA	NA	NA	157732484	157717263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727712_157728512_157728588_157732363
48637	chr15	-	1388	5	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	393	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	720.858299182301	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACCCTGCCAGCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	83056400	83037699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038686_83046048_83046158_83046432_83046506_83050275_83050408_83056312
48639	chr9	+	633	6	FSM	ENSMUSG00000059412.8	ENSMUST00000213158.2	711	6	78	0	35	0	multi-exon	FALSE	canonical	0	0	junction_1	87.0461946325053	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	NA	False	NA	NA	NA	45317300	45321576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_45317465_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
48641	chr4	-	1325	7	Antisense	novelGene_ENSMUSG00000028333.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	232	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGGAGCGCGGCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	46472527	46451083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_46451350_46460087_46460238_46463804_46463929_46468557_46468724_46469899_46470006_46471395_46471463_46472081
48642	chr4	-	1748	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-6	-53	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	323.722409399021	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCATGACTAACTGTGTA	2607	False	NA	NA	False	NA	NA	NA	129229048	129203362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203951_129211450_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222463_129228289_129228438_129229010
48643	chr7	-	1796	11	NIC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_10	573.136842298591	727	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	9050	False	NA	NA	False	NA	NA	NA	45045157	45025886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044516_45044597_45044932
48645	chr10	+	1151	10	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1272.09166724594	169	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2119	False	NA	NA	False	NA	NA	NA	61484397	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503374_61508169_61508213_61509597
48646	chr4	+	4294	9	NNC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	56	-20	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	30.59998978758	272	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCATTTCACTGTCATCT	98	False	NA	NA	False	NA	NA	NA	103171064	103223620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_103173536_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
48647	chr7	-	1481	12	NIC	ENSMUSG00000006763.15	novel	4728	12	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	119.649557161427	50	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCGAAGTTGGCATCGGGA	NA	False	NA	NA	False	NA	NA	NA	46360085	46338734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351917_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
48649	chr14	-	2579	5	FSM	ENSMUSG00000021982.15	ENSMUST00000225103.2	2579	5	2	-2	0	2	multi-exon	FALSE	canonical	3	110	junction_3	7.29297607290741	208	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATAGGGTCGTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	59835393	59822019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
48651	chr19	+	1771	12	NNC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.54506760099	6	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGGTTTGACCTACTGTT	3610	False	NA	NA	False	NA	NA	NA	4198652	4204030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595_4203767_4203837
48652	chr5	-	894	5	NNC	ENSMUSG00000070493.4	novel	915	4	NA	NA	-13027	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	3126.33550462838	45	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	NA	False	NA	NA	False	NA	NA	NA	129929338	129909999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129910238_129911269_129911421_129912774_129912930_129928076_129928271_129929182
48653	chr12	-	3985	1	ISM	ENSMUSG00000033713.13	ENSMUST00000046859.12	7705	6	199725	10	97205	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	56	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAAATAAGTATTGTGTG	2334	False	NA	NA	False	NA	NA	NA	99160331	99156346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_99156300_99160300
48654	chr14	+	3346	21	FSM	ENSMUSG00000006527.17	ENSMUST00000054230.12	7837	21	98	4393	98	-17	multi-exon	FALSE	canonical	3	68	junction_1	13.3913218167588	59	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTCATTTGGGGATAAT	NA	False	NA	NA	False	NA	NA	NA	30437669	30540285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30437833_30487919_30488059_30491755_30491851_30495841_30496083_30499860_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532_30519647_30521697_30521741_30523814_30523877_30524488_30524629_30532252_30532363_30533345_30533522_30537030_30537210_30537364_30537611_30538704_30538834_30539664
48655	chr6	+	1272	6	NNC	ENSMUSG00000079426.14	novel	2270	6	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	506.713568004647	7	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGTGCTCTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	113355152	113366612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113355170_113357686_113357806_113358923_113358973_113361103_113361139_113362450_113362622_113365731
48656	chr2	-	1552	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	102	2461	-29	-38	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGGTCTAAAGGGCTGC	NA	False	NA	NA	False	NA	NA	NA	39116361	39086826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
48657	chr15	-	2086	18	NNC	ENSMUSG00000039828.8	novel	2126	18	NA	NA	5	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	102.37274994253	1	60	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATTTTGTCCTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	8128670	7902539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916868_7918572_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
48658	chr8	+	1951	16	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	2	11	junction_4	163.585329415568	1	60	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGAAGCCATCTGCATGG	NA	False	NA	NA	False	NA	NA	NA	85415917	85426432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
48659	chr2	-	1890	17	NNC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	54	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1016.27773447702	1	68	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATGCAGTGTGCTCATT	NA	False	NA	NA	False	NA	NA	NA	156022008	155989864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_156000290_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021921
48660	chr12	+	3267	9	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	1	-167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	178.456533573305	1	201	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATAAATGTGACTTAGA	NA	False	NA	NA	False	NA	NA	NA	59113708	59120617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116939_59117084_59117164_59117304_59118211
48662	chrX	-	2824	20	Antisense	novelGene_ENSMUSG00000031262.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	123	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGATGAGATCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	133263388	133209311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_133209381_133209473_133209594_133210885_133211121_133212737_133212877_133218358_133218482_133218777_133218879_133225507_133225558_133225838_133225887_133236832_133236922_133237257_133237386_133237956_133238119_133238349_133238471_133239500_133239592_133240579_133240698_133241092_133241160_133243822_133243920_133251815_133251863_133251991_133252211_133261961_133262005_133262631
48665	chr16	-	1174	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	23	646	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2886.14405392385	6	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	NA	False	NA	NA	NA	95928906	95922787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928766
48667	chr3	-	1183	8	NNC	ENSMUSG00000028029.12	novel	1126	7	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	420.18387617318	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATAAAATATGTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	132389598	132366268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132383016_132383130_132389553
48668	chr15	+	1003	2	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98459	-257	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCAAGCGTGCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	98829312	98935734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98829987_98935405
48669	chr11	+	1677	10	Antisense	novelGene_ENSMUSG00000020528.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCATTCGACTCCAGAAC	2610	False	NA	NA	False	NA	NA	NA	61620483	61652389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_61621131_61622252_61622397_61627740_61627890_61631770_61631830_61635772_61635885_61639735_61639910_61643691_61643760_61647020_61647171_61647406_61647505_61652313
48670	chr11	+	1824	3	Antisense	novelGene_ENSMUSG00000089542.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTCCTAATGCCATAACC	NA	False	NA	NA	False	NA	NA	NA	69558026	69560041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69558935_69559029_69559368_69559463
48671	chr17	+	1636	3	NIC	ENSMUSG00000024181.10	novel	1134	4	NA	NA	14	-8	intron_retention	FALSE	canonical	3	1408	junction_2	17.5	1	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGAAGTCTGGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	26342531	26345579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26342824_26343529_26344539_26345244
48672	chr5	+	2157	14	NNC	ENSMUSG00000029389.18	novel	2799	14	NA	NA	0	-691	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	38.8698328440636	1	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTGTGTGTAATTC	NA	False	NA	NA	False	NA	NA	NA	124690931	124707032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695092_124696084_124696235_124697190_124697381_124698780_124698864_124699918_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
48673	chr15	+	1276	1	NIC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	-641	-876	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTCGGAACATCATTTT	NA	False	NA	NA	False	NA	NA	NA	12169720	12170996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_12169700_12171000
48676	chr4	-	4204	20	Antisense	novelGene_ENSMUSG00000028309.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	183	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGGACTCCAAGGGATTC	NA	False	NA	NA	False	NA	NA	NA	49656886	49632147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_49632494_49633247_49633410_49637904_49638072_49638184_49638333_49638622_49638806_49642063_49642183_49644481_49644630_49645617_49645695_49645883_49646003_49648282_49648464_49649267_49649403_49649722_49649853_49649964_49650334_49651438_49651562_49652537_49652673_49653062_49653273_49654186_49654309_49654442_49654583_49655405_49655506_49655796
48678	chr11	+	1189	1	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	-1756	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACCAGGCAAAGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	116737970	116739159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116738000_116739200
48679	chr15	-	1415	9	NIC	ENSMUSG00000115987.2	novel	941	10	NA	NA	4	0	intron_retention	FALSE	canonical	3	892	junction_8	90.8033589687078	40	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9612	False	NA	NA	False	NA	NA	NA	76510265	76506308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76509406_76510188
48680	chr6	+	4468	35	NNC	ENSMUSG00000030111.10	novel	4605	36	NA	NA	56	-24	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	19.3067793819634	1	198	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCTTTCATATCTATCC	NA	False	NA	NA	False	NA	NA	NA	121613242	121656162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_121613355_121615234_121615419_121616164_121616322_121616473_121616527_121618213_121618400_121618947_121619033_121621073_121621195_121621852_121621968_121622110_121622221_121623757_121623920_121624907_121625136_121625563_121625628_121626725_121626869_121631423_121631574_121634338_121634491_121634897_121634968_121636245_121636373_121636878_121637108_121637801_121637929_121638385_121638508_121639351_121639395_121644073_121644158_121645004_121645182_121645487_121645576_121646478_121646628_121646898_121646970_121647860_121648032_121650425_121650650_121651689_121651909_121652077_121652206_121653009_121653101_121653862_121653932_121654940_121655044_121655477_121655520_121656050
48681	chr3	+	3678	1	Intergenic	novelGene_3088	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	89	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGCTTCTATGAGGAT	NA	False	NA	NA	False	NA	NA	NA	22184854	22188532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_22184900_22188500
48684	chr13	-	3732	5	Antisense	novelGene_ENSMUSG00000021322.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTATTCTTCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	21183054	21120570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_21120621_21125978_21126075_21163632_21163716_21178799_21178836_21179587
48685	chr15	-	2567	3	NNC	ENSMUSG00000033075.18	novel	518	2	NA	NA	2468	6118	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	105	13	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGCTTATCAAGAACACAA	NA	False	NA	NA	False	NA	NA	NA	97982957	97976804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97979180_97980123_97980209_97982850
48686	chr15	-	863	1	NIC	ENSMUSG00000033075.18	novel	3882	19	NA	NA	9727	8087	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGCTGTGGCAGGCT	2213	False	NA	NA	False	NA	NA	NA	97975698	97974835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_97974800_97975700
48687	chr11	+	2691	24	NNC	ENSMUSG00000020549.15	novel	697	7	NA	NA	-72	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.6368753681785	3	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGTGTGGGGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	64869791	64892431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_64869852_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
48688	chr7	+	1834	6	NIC	ENSMUSG00000030990.19	novel	1201	7	NA	NA	3	-2	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	60.9950817689426	2	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACAGTCTGAGGTAGGTA	622	False	NA	NA	False	NA	NA	NA	101872262	101887765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101872358_101872585_101872698_101885300_101885554_101885654_101885762_101886328_101886438_101886607
48689	chr8	-	1267	6	Genic_Genomic	ENSMUSG00002075691.1	novel	77	1	NA	NA	-3832	-30	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGCCCCTGCCTCCTGA	NA	False	NA	NA	False	NA	NA	NA	111772488	111768609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_111769016_111769288_111769435_111769862_111769971_111770273_111770424_111771507_111771633_111772156
48690	chr3	+	1976	4	ISM	ENSMUSG00000008604.12	ENSMUST00000008748.8	3330	11	11301	4	1152	-4	3prime_fragment	FALSE	canonical	3	1295	junction_1	104.097176821575	1	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATATTGGTGGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	88472365	88477028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88472398_88472519_88472636_88472997_88473185_88475387
48691	chr2	+	1036	5	NIC	ENSMUSG00000001403.14	novel	967	6	NA	NA	30	-4	intron_retention	FALSE	canonical	3	1606	junction_1	48.6492548761027	223	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGTTTTCTCAAGTTA	NA	False	NA	NA	False	NA	NA	NA	164611852	164614823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164614147_164614423
48692	chr8	-	1811	1	Antisense	novelGene_ENSMUSG00000099881.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	160	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGCGGCCTCATCACTT	NA	False	NA	NA	False	NA	NA	NA	123771143	123769332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_123769300_123771100
48693	chr1	-	3093	5	Antisense	novelGene_ENSMUSG00000044835.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTTTGTGTAGAAGGTTC	NA	False	NA	NA	False	NA	NA	NA	160998057	160988148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160988335_160990837_160990976_160991741_160991782_160995278_160995550_160995599
48694	chr7	+	1335	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	-17	-1	-17	1	multi-exon	FALSE	canonical	3	448	junction_2	14	2194	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTGCTTGGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	79910945	79915123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79911172_79911568_79911680_79914125
48695	chr10	+	2744	2	FSM	ENSMUSG00000035759.5	ENSMUST00000040454.5	2744	2	1	-1	1	1	multi-exon	FALSE	canonical	3	23	junction_1	0	54	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATGTAAGTTAATTGTC	NA	False	NA	NA	False	NA	NA	NA	111134540	111137589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111134769_111135073
48696	chr2	-	2548	11	NIC	ENSMUSG00000006471.19	novel	2336	14	NA	NA	30	-3	intron_retention	FALSE	canonical	3	170	junction_5	16.1124175715502	18	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGTAGCCGCTCACTT	NA	False	NA	NA	False	NA	NA	NA	25145328	25137243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25137867_25137971_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
48697	chr19	+	1897	11	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	98.3176484665902	17	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTGGGTCTGTGCCGTG	4258	False	NA	NA	False	NA	NA	NA	46345378	46363693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884_46362936_46363449
48698	chr14	+	928	7	NNC	ENSMUSG00000022110.14	novel	2229	11	NA	NA	-8762	-2	intron_retention	FALSE	non_canonical	0	0	junction_2	635.877019032244	1	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAAAGCTTTATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	73819185	73833221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_73819258_73828196_73828250_73828316_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
48699	chr4	+	1494	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	50	269	9	-269	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	21	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGAAATGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	132495695	132505794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
48700	chr12	+	2061	4	NNC	ENSMUSG00000042063.12	novel	1958	3	NA	NA	15	5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	16.9771087709958	72	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTAATGTCCTCTAAT	NA	False	NA	NA	False	NA	NA	NA	116011410	116024217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_116011487_116011678_116011844_116018341_116018469_116022524
48701	chr5	-	2618	4	NNC	ENSMUSG00000004849.15	novel	1353	5	NA	NA	2193	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	362.097592738017	2	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTGACTTTGCCTTGGC	201	False	NA	NA	False	NA	NA	NA	137072068	137063854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137064646_137066271_137067543_137070326_137070732_137071917
48702	chr2	+	2569	18	Antisense	novelGene_ENSMUSG00000034906.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	118	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCGCGAGCGCCAAGCGC	NA	False	NA	NA	False	NA	NA	NA	126945777	126975817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_126946201_126947765_126947829_126948016_126948110_126949268_126949392_126950406_126950584_126955483_126955591_126958451_126958581_126959430_126959533_126959996_126960148_126963045_126963246_126963959_126964048_126965456_126965643_126966746_126966876_126967470_126967611_126968039_126968128_126969023_126969114_126969411_126969646_126975771
48703	chr14	-	1745	13	NNC	ENSMUSG00000021814.18	novel	2851	13	NA	NA	0	361	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	273.099328185837	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8170	False	NA	NA	False	NA	NA	NA	20530009	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514766_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
48704	chr2	+	1657	12	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	354.093161388566	19	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAGACTCCTTTGATT	7188	False	NA	NA	False	NA	NA	NA	29779791	29821756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29821467
48705	chr4	+	1364	11	NNC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	2	-43	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	152.184887554579	15	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATGTGTGGGGCCCTGAA	NA	False	NA	NA	False	NA	NA	NA	107171567	107216976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107197527_107197622_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
48706	chr7	-	1949	6	FSM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	6	0	6	0	multi-exon	FALSE	canonical	3	559	junction_1	167.41517255016	320	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	NA	False	NA	NA	NA	19483452	19458085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
48707	chr12	+	2149	13	NNC	ENSMUSG00000035933.6	novel	750	5	NA	NA	-62671	-4	intron_retention	FALSE	canonical	2	3	junction_1	26.4589566855704	3	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTACTGGTGTTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	31881448	31987625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_31881734_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
48708	chrX	+	1078	8	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	5	-482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1377.51364303033	25	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCCAGATGTAGCCATCC	NA	False	NA	NA	False	NA	NA	NA	20524569	20548936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535435_20548195_20548244_20548347_20548449_20548616
48709	chrX	-	928	8	NNC	ENSMUSG00000054727.3	novel	1224	9	NA	NA	6749	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	602.415613533191	23	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATTGACTTTAGTATATT	NA	False	NA	NA	False	NA	NA	NA	52753049	52744868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52750411_52750538_52751980_52752016_52752989
48710	chr18	+	1469	7	Intergenic	novelGene_4490	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAAGAATTCTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	6214091	6223644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_6214703_6216226_6216367_6216742_6216948_6220223_6220292_6220800_6220995_6222717_6222872_6223547
48711	chr9	+	776	7	NNC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	-835	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	305.27514911415	1	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGCTCTTGTGTCTGTCTT	7653	False	NA	NA	False	NA	NA	NA	21328416	21331572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21328428_21328572_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
48712	chr19	+	1574	3	NNC	ENSMUSG00000118155.2	novel	1282	3	NA	NA	-733	164	intron_retention	FALSE	non_canonical	0	0	junction_1	0	23	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGGCTGTAAAAGAAATCTA	NA	False	NA	NA	False	NA	NA	NA	23038084	23041029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_23039446_23040705_23040803_23040913
48713	chr10	+	2320	1	NIC	ENSMUSG00000019810.16	novel	2007	8	NA	NA	7156	14	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATGAATTCCGTAATTAT	NA	False	NA	NA	False	NA	NA	NA	13388936	13391256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_13388900_13391300
48714	chr5	+	1829	4	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1356	6	intron_retention	FALSE	canonical	2	5	junction_1	1016.95438551698	5	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCTGCTGTCAGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	115602964	115612761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115603082_115604200_115604380_115608840_115610180_115612567
48715	chr7	+	1419	5	ISM	ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	19055	581	288	-581	3prime_fragment	FALSE	canonical	3	323	junction_3	17.3403431338598	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTACCATAGTCTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	87946347	87959515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_87946458_87948652_87948806_87951392_87951509_87957220_87957353_87958607
48716	chr2	+	2217	9	Genic_Genomic	ENSMUSG00000086407.2	novel	2658	3	NA	NA	-23153	-1710	multi-exon	TRUE	non_canonical	0	0	junction_1	0	170	4	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCTGGCGCGAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	150424999	150450464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_150426108_150427678_150427876_150428300_150428438_150428912_150429085_150430820_150430940_150431952_150432048_150436222_150436340_150442165_150442277_150450303
48718	chr15	+	2496	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	34	6	34	-6	multi-exon	TRUE	canonical	3	145	junction_2	1	253	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAAGTTTGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	97682269	97690567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_97682498_97687783_97687952_97688467
48719	chr19	+	1454	5	NIC	ENSMUSG00000108414.2	novel	744	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	781	junction_1	145.777870405628	254	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTATTGTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	8701503	8703804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8702888_8703145_8703191_8703430_8703467_8703602
48720	chr15	-	1797	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	25	-1	-5	1	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	2	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGAAGTCCCTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	75952736	75942037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
48721	chr11	+	2058	9	ISM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	593	10	579	-10	3prime_fragment	FALSE	canonical	3	59	junction_3	8.3132048573339	2	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTTTACAGCGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	53661913	53668139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
48722	chr8	+	1669	11	FSM	ENSMUSG00000031634.14	ENSMUST00000130412.8	1613	11	-6	-50	0	47	multi-exon	FALSE	canonical	3	163	junction_5	20.5873747719324	603	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTTGAATATTCTTTTAA	8860	False	NA	NA	False	NA	NA	NA	46428564	46449944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_46428626_46432245_46432333_46433351_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
48723	chr5	+	2529	3	FSM	ENSMUSG00000029432.13	ENSMUST00000137604.2	871	3	-609	-1049	-609	1	multi-exon	FALSE	canonical	3	290	junction_2	35	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGATGTCTAATTTTTACA	NA	False	NA	NA	False	NA	NA	NA	129829112	129835315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129830385_129831905_129831990_129834142
48724	chr17	+	1613	6	NNC	ENSMUSG00000046711.17	novel	1030	5	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2255.93217983165	1	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGACAGTCTCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	27775586	27782636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27781789_27781843
48725	chr17	+	1548	14	NNC	ENSMUSG00000055817.19	novel	1728	14	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	309.417605248748	9	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTGTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84013670	84100304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063049_84070380_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
48727	chr8	+	2803	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	57	-1	-5	0	multi-exon	FALSE	canonical	3	174	junction_5	34.038693468775	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTCTGGTCTCCAGTGG	NA	False	NA	NA	False	NA	NA	NA	87350728	87443260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
48728	chr14	+	3110	13	FSM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	273	7	273	-7	multi-exon	FALSE	canonical	3	1379	junction_7	93.7817723938577	889	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTAGAAGTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	34032956	34067215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_34033300_34041838_34041920_34043724_34043781_34047469_34047534_34051245_34051341_34056068_34056249_34057258_34057397_34058049_34058188_34058452_34058534_34060716_34060841_34061883_34061976_34064075_34064139_34065560
48729	chr11	-	2105	6	NIC	ENSMUSG00000020744.14	novel	2307	7	NA	NA	-2	-13	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	57.631241527491	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTATATACCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	115518958	115505022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115518890
48730	chr5	-	3296	5	ISM	ENSMUSG00000029202.13	ENSMUST00000200766.4	1974	16	9703	8217	-1797	6655	internal_fragment	FALSE	canonical	3	577	junction_3	20.6760731281353	106	79	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTAAGCCCCAACGTTTT	NA	False	NA	NA	False	NA	NA	NA	65798056	65788429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899
48731	chr11	-	1723	12	NNC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	1	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	82.6713097425307	1	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTTTGTTTTTTAAAC	265	False	NA	NA	False	NA	NA	NA	61652865	61620498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61621129_61622250_61622398_61625829_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639835_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
48732	chr11	+	1732	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	41	0	41	0	multi-exon	FALSE	canonical	3	50	junction_1	322.410409605866	998	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	29668603	29692916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
48733	chr15	+	3066	14	NNC	ENSMUSG00000039801.8	novel	2153	2	NA	NA	-3793	0	intron_retention	TRUE	canonical	1	2	junction_1	16.9087351816683	73	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	8272793	8300642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_8273180_8273286_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
48734	chr3	+	1192	8	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-80	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	528.948822801277	1	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	32762833	32781122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768694_32774583_32774665_32776768_32776865_32779395_32779483_32780670
48735	chr3	+	1756	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	22	271	22	-11	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	1	93	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATCAGTGTGCATTTGTG	NA	False	NA	NA	False	NA	NA	NA	121220167	121251585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
48736	chr8	-	2286	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	2	-3	2	2	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCTGAAACTGCTTT	NA	False	NA	NA	False	NA	NA	NA	11685752	11661580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
48737	chr19	-	234	1	Intergenic	novelGene_1207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGGGAAATAAAGCCAAAGA	NA	False	NA	NA	False	NA	NA	NA	12743635	12743401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_12743400_12743600
48739	chr17	+	2152	13	NNC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_3	80.7071179567756	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9220	False	NA	NA	False	NA	NA	NA	57071753	57076841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57071942_57072524_57072793_57073781_57074392_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
48740	chr2	+	1918	14	Intergenic	novelGene_2702	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	33	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGGACGCGCCCGCGCCC	NA	False	NA	NA	False	NA	NA	NA	126672063	126718110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_126672184_126673116_126673257_126675606_126675662_126677375_126677516_126679257_126679352_126682659_126682737_126684775_126684903_126686220_126686394_126687992_126688164_126690414_126690538_126691814_126692033_126693262_126693455_126696553_126696611_126717879
48741	chr17	-	2646	5	ISM	ENSMUSG00000024222.18	ENSMUST00000079413.11	3543	11	74032	6	6387	-3	3prime_fragment	FALSE	canonical	3	551	junction_1	9.20258115965298	2	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTTTTCATTGTTCATG	NA	False	NA	NA	False	NA	NA	NA	28631091	28618073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007
48742	chr13	-	1142	5	FSM	ENSMUSG00000061474.12	ENSMUST00000076037.9	469	5	-488	-185	-417	-12	multi-exon	FALSE	canonical	3	27	junction_3	598.6340179943	5854	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTAATAAATGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	100881584	100872474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100880296_100880333_100881037
48743	chr11	+	1896	2	ISM	ENSMUSG00000048497.12	ENSMUST00000148696.2	366	3	11342	-1565	10710	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	109	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	151	False	NA	NA	False	NA	NA	NA	62550984	62557180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_62551196_62555495
48744	chr8	-	1611	9	NIC	ENSMUSG00000038000.11	novel	2722	12	NA	NA	-6	-3	intron_retention	FALSE	canonical	3	22	junction_7	82.6664041494488	116	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGGAGGAGAGAGATTCA	NA	False	NA	NA	False	NA	NA	NA	106427723	106424792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426528_106426635_106426793_106426913_106427035_106427334_106427472_106427551
48745	chr17	+	1273	5	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	858.014677904755	3	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGTTTAACTTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257614_29260180_29260268_29260357
48746	chr19	+	1830	4	FSM	ENSMUSG00000024902.6	ENSMUST00000236354.2	687	4	-48	-1095	-15	0	multi-exon	FALSE	canonical	3	572	junction_2	16.5730705262081	25	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTCTCAGCTTCTCTCC	3711	False	NA	NA	False	NA	NA	NA	5012342	5014972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533
48747	chr2	-	1804	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102496.8	1848	6	44	0	31	0	multi-exon	FALSE	canonical	1	2	junction_5	68.2800117164606	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	NA	NA	NA	120439752	120434718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439669
48748	chr3	+	3026	8	NNC	ENSMUSG00000051278.13	novel	7153	25	NA	NA	-14	8437	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_6	24.7493557945434	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGACACCAGGATTGCCT	NA	False	NA	NA	False	NA	NA	NA	127347123	127366924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123_127357342_127361276_127361351_127366788
48749	chr13	+	1831	1	NIC	ENSMUSG00000021548.11	novel	599	5	NA	NA	111	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTTTGTTTTGATG	NA	False	NA	NA	False	NA	NA	NA	85360013	85361844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_85360000_85361800
48750	chrX	-	4408	20	FSM	ENSMUSG00000031111.17	ENSMUST00000033442.14	4421	20	3	10	3	-10	multi-exon	FALSE	canonical	0	0	junction_6	2.03569259008565	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAACCAAACCATGGTAGT	NA	False	NA	NA	False	NA	NA	NA	48886623	48871422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_48871830_48871976_48872101_48872488_48872768_48872898_48873187_48873382_48873671_48873848_48874137_48874864_48875153_48875735_48876015_48876234_48876526_48876909_48876943_48877024_48877096_48878958_48879080_48879391_48879644_48880163_48880458_48880691_48880977_48882780_48883069_48883368_48883651_48883999_48884027_48884155_48884285_48886529
48752	chr1	+	1956	6	FSM	ENSMUSG00000026223.16	ENSMUST00000027425.16	2230	6	284	-10	-54	10	multi-exon	FALSE	canonical	3	192	junction_3	14.9853261559434	262	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCTCTTCTGACTT	NA	False	NA	NA	False	NA	NA	NA	85822285	85836406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142_85834254_85834728_85834880_85835267
48753	chr9	+	1991	7	NNC	ENSMUSG00000032309.16	novel	2112	7	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	461.943599250914	1	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACTGGTGTTGTAATTA	NA	False	NA	NA	False	NA	NA	NA	55116294	55131712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_55116445_55116636_55116770_55121188_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
48754	chr2	+	1083	1	NIC	ENSMUSG00000039069.20	novel	2224	10	NA	NA	30	-7702	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGACCTGCCAAGGCTAT	NA	False	NA	NA	False	NA	NA	NA	179713615	179714698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_179713600_179714700
48755	chr7	+	3586	7	NNC	ENSMUSG00000053198.15	novel	4841	7	NA	NA	22	0	intron_retention	FALSE	non_canonical	0	0	junction_6	14.4183525025881	3	88	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATGTGTCTTGGTTCTCG	1783	False	NA	NA	False	NA	NA	NA	27198770	27219466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27198791_27203957_27204002_27204089_27204189_27204304_27204432_27207371_27207529_27214675_27217055_27218706
48756	chr12	-	1418	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2750.28261998579	1	81	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	111638731	111635794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638212_111638408_111638663
48757	chr4	-	4438	13	FSM	ENSMUSG00000066043.14	ENSMUST00000084170.12	4483	13	50	-5	45	-2	multi-exon	FALSE	canonical	3	61	junction_10	11.8591268181468	1	155	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGAATTTGTGTTACTTT	NA	False	NA	NA	False	NA	NA	NA	132149707	132083235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132114202_132114377_132140380_132140435_132149655
48759	chr5	-	3503	16	NNC	ENSMUSG00000062604.12	novel	4259	15	NA	NA	29	-701	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_8	55.3628836756982	1	94	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTTCCAGACATTGCC	NA	False	NA	NA	False	NA	NA	NA	23880936	23711150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732921_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
48760	chr7	-	2938	2	NIC	ENSMUSG00000037029.9	novel	585	3	NA	NA	13	777	intron_retention	FALSE	canonical	3	14	junction_1	0	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATATTCTTAAATCCTTCT	NA	False	NA	NA	False	NA	NA	NA	29869139	29859916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29862799_29869083
48761	chr7	+	1993	10	NIC	ENSMUSG00000030890.17	novel	1795	13	NA	NA	-27	-4	intron_retention	FALSE	canonical	3	265	junction_1	33.6488768546626	726	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAAACAGGCTCGTGTG	NA	False	NA	NA	False	NA	NA	NA	105385904	105392121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105391116_105391203_105391304_105391413_105391545_105391719
48762	chr17	+	2285	5	FSM	ENSMUSG00000024014.9	ENSMUST00000234294.2	1578	5	-41	-666	-41	-1	multi-exon	FALSE	canonical	3	1677	junction_3	119.340636415263	233	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAGTTTTCCATTCAT	NA	False	NA	NA	False	NA	NA	NA	29710237	29715085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29710406_29710493_29710545_29710638_29711006_29712695_29712873_29713563
48763	chr7	+	2373	4	ISM	ENSMUSG00000042289.12	ENSMUST00000106272.8	1725	7	18	7	-4	-7	intron_retention	FALSE	canonical	3	82	junction_2	5.79271573232759	203	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGTCCTTGTCTACCTT	1912	False	NA	NA	False	NA	NA	NA	127399803	127402967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005
48764	chr2	-	2906	18	ISM	ENSMUSG00000038324.14	ENSMUST00000103140.5	3091	19	19220	-15	-61	15	3prime_fragment	FALSE	canonical	3	16	junction_11	84.7447623188857	129	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTTAAAGACTGATGTG	NA	False	NA	NA	False	NA	NA	NA	155515032	155476212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492482_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909
48765	chr17	+	773	9	NNC	ENSMUSG00000024253.10	novel	1354	13	NA	NA	4	-2646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	32.7736079033115	1	22	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCACTGTTTATCACAGC	NA	False	NA	NA	False	NA	NA	NA	84933927	84955098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950282_84950487_84952146_84952225_84954672_84954750_84955073
48766	chr1	-	1314	1	Intergenic	novelGene_436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACCCCACCCACACCTT	NA	False	NA	NA	False	NA	NA	NA	118915608	118914294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118914300_118915600
48767	chr7	-	3651	1	NIC	ENSMUSG00000063535.8	novel	4073	4	NA	NA	5986	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	29	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCATTAAGAAGAACTGGT	3008	False	NA	NA	False	NA	NA	NA	7133737	7130086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_7130100_7133700
48768	chr4	+	1714	6	NIC	ENSMUSG00000028797.21	novel	875	6	NA	NA	0	3	combination_of_known_splicesites	FALSE	canonical	3	11	junction_3	314.184404450635	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAAATGTTTTATTTGTG	3203	False	NA	NA	False	NA	NA	NA	129494499	129502324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129494525_129494775_129495037_129495199_129495419_129496014_129496055_129500879_129500973_129501248
48769	chr10	+	2214	4	NIC	ENSMUSG00000004207.15	novel	2654	14	NA	NA	7467	-5746	intron_retention	FALSE	canonical	3	864	junction_3	91.9383851645583	2	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAATTTGCCCTTTTCC	1610	False	NA	NA	False	NA	NA	NA	60127749	60132627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_60128360_60129128_60129255_60130312_60130889_60131725
48770	chr14	+	1260	2	FSM	ENSMUSG00000063787.5	ENSMUST00000224132.2	419	2	-30	-811	11	1	multi-exon	FALSE	canonical	3	1953	junction_1	0	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGTTGGCCATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	20753136	20754488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20753266_20753357
48772	chr2	+	2121	6	NNC	ENSMUSG00000006418.18	novel	2502	6	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	238.000336134216	15	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGTAAGCTGCAATGTTT	NA	False	NA	NA	False	NA	NA	NA	167345359	167358085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_167345522_167348988_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
48773	chr10	+	1439	12	NIC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	-2	6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	206.551096273781	5	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGAAGTTTGTAAAATGTA	1006	False	NA	NA	False	NA	NA	NA	127851062	127865858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127851221_127851832_127851991_127853844_127853952_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
48774	chr19	-	1786	5	FSM	ENSMUSG00000049670.10	ENSMUST00000051772.10	1800	5	8	6	8	-6	multi-exon	FALSE	canonical	2	63	junction_4	19.0574788468989	246	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATAATTTGTGTTATG	4148	False	NA	NA	False	NA	NA	NA	42074788	42063386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42074635
48775	chr5	+	1535	6	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	246.673873768585	12	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTATGGTCTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	143389606	143407655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555_143407056_143407334
48776	chr1	-	3480	23	FSM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	14	1977	14	-1134	multi-exon	TRUE	canonical	3	288	junction_20	32.2887284275964	219	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAGCTCTATGATATC	NA	False	NA	NA	False	NA	NA	NA	185061579	185018899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_185019389_185020236_185020382_185021549_185021741_185022682_185022829_185023515_185023623_185026940_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
48777	chr7	-	2525	1	NIC	ENSMUSG00000045659.19	novel	5257	25	NA	NA	3508	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGTGTCCTGGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	115725252	115722727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_115722700_115725300
48778	chr5	+	1726	8	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	-28	-925	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	452.524167806516	1	80	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGACTCTGGCTAAGCAA	NA	False	NA	NA	False	NA	NA	NA	111478600	111535300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478700_111483360_111483392_111486148_111486293_111494348_111494449_111495646_111495722_111497356_111497465_111533233_111533471_111534368
48780	chr12	-	300	1	Antisense	novelGene_ENSMUSG00000097055.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTTCCAGGACAACCAGG	NA	False	NA	NA	False	NA	NA	NA	21471039	21470739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21470700_21471000
48783	chr11	-	1311	7	NNC	ENSMUSG00000018565.18	novel	1259	7	NA	NA	25	1	intron_retention	FALSE	canonical	3	40	junction_4	200.092478619262	1820	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTCTGGTAATGCTTAA	9916	False	NA	NA	False	NA	NA	NA	69871062	69859052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865787_69866087_69870655_69870737_69870824
48784	chr3	-	1693	8	Antisense	novelGene_ENSMUSG00000028069.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	826	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGCCCTTCTAGGATG	NA	False	NA	NA	False	NA	NA	NA	87963358	87950413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_87950486_87958467_87958595_87958977_87959049_87959145_87959243_87959336_87959424_87961673_87961766_87962007_87962061_87962264
48785	chr13	+	1639	5	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24289	471	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	17.3997126413053	73	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAACCTGGAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	66901215	66927677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66901313_66924718_66924862_66925311_66925946_66926784_66927256_66927383
48786	chr11	+	2229	5	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	-11	12	intron_retention	FALSE	canonical	0	0	junction_2	484.150286584651	1	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTGTCTTGTAAATAGT	NA	False	NA	NA	False	NA	NA	NA	101518786	101526910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101519279_101521063_101522156_101524504_101524727_101525613_101525700_101526573
48787	chr13	-	1818	11	NNC	ENSMUSG00000021650.8	novel	1704	10	NA	NA	16	-8	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	142.857971426169	792	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCAGACTCGGGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	99481197	99456162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_99456902_99457309_99457448_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
48788	chr6	-	1912	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	27	-122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	218.014764408285	1	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGAACAATTGTATAACT	4640	False	NA	NA	False	NA	NA	NA	49240917	49220983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49221666_49221801_49221870_49222409_49222526_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229741_49230043_49240771
48789	chr1	-	2519	19	NNC	ENSMUSG00000025968.17	novel	2661	19	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	232.662322202886	1	132	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	NA	NA	NA	63215841	63182754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204188_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
48790	chr2	-	1477	12	NNC	ENSMUSG00000027195.11	novel	1902	11	NA	NA	7	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	213.059297996614	91	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGTGTATTTTTGATAG	NA	False	NA	NA	False	NA	NA	NA	93988247	93863038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_93863275_93863632_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
48791	chr10	+	1126	7	NNC	ENSMUSG00000060904.15	novel	2080	6	NA	NA	321	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	453.194096264381	45	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGATGTCTTTAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	88567250	88579955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884_88579111_88579742
48792	chr11	-	2086	13	NNC	ENSMUSG00000020289.16	novel	2865	13	NA	NA	5	261	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_2	46.4665351504595	22	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATGGTTTTGTGTGTAT	4664	False	NA	NA	False	NA	NA	NA	32217610	32182673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_32183117_32183903_32184097_32184702_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
48793	chr9	+	1247	9	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	496.748663183908	4	20	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGACTCTGAGTGGCTTT	612	False	NA	NA	False	NA	NA	NA	45281726	45307451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301362_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306472_45306545_45307048_45307245
48794	chr17	-	1467	6	NNC	ENSMUSG00000073406.11	novel	1138	6	NA	NA	-25	5	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	203.789499238798	1023	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTTCCTGCATTGAGC	NA	False	NA	NA	False	NA	NA	NA	36395140	36391001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36391216_36391890_36392008_36392133_36392410_36393899_36394401_36394587_36394858_36395051
48795	chr13	-	4572	30	Intergenic	novelGene_1316	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	114	11	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGCTGCCCAGCAGCTG	7850	False	NA	NA	False	NA	NA	NA	12453717	12426188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_12426220_12426921_12427117_12428107_12428284_12428387_12428534_12429257_12429454_12430312_12430455_12430813_12431006_12432360_12432573_12432966_12433111_12435921_12436027_12436158_12436301_12436919_12437035_12437116_12437243_12438513_12438641_12439497_12439730_12441032_12441160_12441640_12441802_12444645_12444694_12445020_12445144_12445789_12445932_12446559_12446850_12447505_12447658_12448489_12448651_12448792_12448938_12449070_12449171_12449252_12449422_12449925_12450080_12450547_12450708_12452712_12452822_12453467
48796	chr8	-	1107	1	Antisense	novelGene_ENSMUSG00000005413.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGCTCCTCAAACAGCTA	NA	False	NA	NA	False	NA	NA	NA	75826517	75825410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_75825400_75826500
48797	chrX	+	1423	12	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-2032	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1026.15189055	1	49	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20542283	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20545963_20546002_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
48800	chr1	-	1255	7	Antisense	novelGene_ENSMUSG00000065228.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	333	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGATGGCGGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	160866107	160862735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160862763_160863319_160863371_160863548_160863825_160864388_160865116_160865562_160865608_160865794_160865841_160866024
48802	chr9	-	1765	4	FSM	ENSMUSG00000066892.15	ENSMUST00000131343.8	761	4	11	-1015	0	0	multi-exon	FALSE	canonical	3	9	junction_3	34.3446583263767	25	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTGCACTTATTTAAC	NA	False	NA	NA	False	NA	NA	NA	20556043	20549081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20550495_20553319_20553393_20555490_20555595_20555868
48803	chr1	+	3221	23	FSM	ENSMUSG00000026519.17	ENSMUST00000027800.15	3306	23	77	8	-38	1	multi-exon	TRUE	canonical	3	13	junction_1	9.65307299163423	55	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCTCTCATGCTTC	NA	False	NA	NA	False	NA	NA	NA	180770100	180802669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180770125_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
48804	chr2	+	1240	3	ISM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	2879	1	-991	1	intron_retention	FALSE	canonical	3	1931	junction_2	198	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGGTCTGGGCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	179816156	179818078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179816189_179816657_179816740_179816952
48806	chr3	-	1416	5	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.925225100195	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTATTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	90398256	90395676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90396532_90396623_90396901_90397460_90397580_90397854_90397902_90398138
48807	chr19	-	1624	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	-60	-1319	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	323	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	NA	False	NA	NA	NA	10926690	10920163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926169_10926288
48809	chr9	+	1970	8	NNC	ENSMUSG00000025785.6	novel	1053	8	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	475.078038702215	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTTGGTCCATTGGT	NA	False	NA	NA	False	NA	NA	NA	122942311	122965179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_122942388_122947955_122948058_122948305_122949365_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
48810	chr1	+	846	1	ISM	ENSMUSG00000025931.16	ENSMUST00000189400.7	5330	3	47604	595	15951	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGATGTCAGGGTTA	NA	False	NA	NA	False	NA	NA	NA	21008433	21009279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_21008400_21009300
48811	chr9	-	2039	10	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	21	-14	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	86.9454206547965	1	66	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTCCAATCTAGTCATG	NA	False	NA	NA	False	NA	NA	NA	27066668	27008693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27011611_27011744_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
48812	chr9	-	1479	11	FSM	ENSMUSG00000033629.7	ENSMUST00000036615.7	2709	11	3	1227	3	-1227	multi-exon	FALSE	canonical	3	252	junction_1	24.7620677650313	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCTACAGGCACTGTCTG	NA	False	NA	NA	False	NA	NA	NA	64928972	64895491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_64895812_64897598_64897731_64898255_64898363_64899538_64899652_64905476_64905605_64908262_64908374_64911538_64911591_64912889_64913055_64913842_64913917_64917755_64917799_64928738
48814	chr6	-	2721	1	FSM	ENSMUSG00000107821.2	ENSMUST00000164674.3	2044	1	-200	-477	-200	477	mono-exon	FALSE	NA	NA	NA	NA	NA	7	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTTCAATGAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50599064	50596343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_50596300_50599100
48815	chr12	-	1363	3	NIC	ENSMUSG00000041359.15	novel	1299	3	NA	NA	-13	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	54	111	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105189009	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_105183961_105184917_105185089_105188766
48817	chr7	+	1815	8	NNC	ENSMUSG00000025510.15	novel	1865	8	NA	NA	11	0	intron_retention	FALSE	canonical	3	18	junction_7	108.681335348169	54	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCGAATCAGCTTGCTG	NA	False	NA	NA	False	NA	NA	NA	141047316	141051385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050344_141050463
48818	chr10	-	1620	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	4	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	929.090508806176	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGCCTCCCTGGACCATA	NA	False	NA	NA	False	NA	NA	NA	127358251	127353597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354099_127354250_127354339_127354440_127354660_127354822_127354985_127355125_127355253_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
48819	chr6	-	1800	13	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	240.52423936523	3	38	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	9686	False	NA	NA	False	NA	NA	NA	125153726	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147775_125149992_125150126_125150318_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614
48820	chr4	+	1809	18	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	65.0266913523616	70	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	NA	False	NA	NA	NA	116664950	116676628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116664969_116667792_116667886_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
48822	chr3	+	2578	3	NIC	ENSMUSG00000015749.13	novel	637	4	NA	NA	11	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	807	1	130	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTAGCTTCAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	95836647	95854699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95836963_95851618_95851674_95852491
48823	chr11	+	3608	1	NIC	ENSMUSG00000069844.13	novel	2186	6	NA	NA	518	-7281	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCCGGTTTTACTTGTAT	NA	False	NA	NA	False	NA	NA	NA	66944013	66947621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_66944000_66947600
48824	chr3	-	1823	12	NNC	ENSMUSG00000015697.15	novel	4622	22	NA	NA	-17	1997	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.7353991710162	2	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTATTCAGTTTGGAGAT	1671	False	NA	NA	False	NA	NA	NA	95264484	95244458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95244577_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95261810_95262005_95263244_95263514_95264375
48825	chr4	-	1660	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	902.658742579695	1	81	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093426_41093517_41093703_41093781_41094000_41094265_41094380_41094708_41094839_41095144_41095272_41098001
48826	chr2	-	2901	5	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	-1	6	intron_retention	FALSE	canonical	3	34	junction_2	23.7644692766323	23	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTTTTAAATCTGTG	8326	False	NA	NA	False	NA	NA	NA	158203463	158197698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_158197962_158199117_158201353_158202383_158202520_158202862_158202991_158203324
48827	chr11	+	3461	19	FSM	ENSMUSG00000011877.14	ENSMUST00000100812.4	3476	19	-5	20	4	-20	multi-exon	TRUE	canonical	3	379	junction_15	38.5310921429486	280	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCACTTCTGATGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	77384391	77398592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_77384461_77389790_77389925_77390342_77390456_77390564_77390671_77391173_77391392_77391472_77391568_77391897_77391941_77393843_77393893_77394181_77394255_77394746_77394845_77395197_77395310_77395424_77395559_77395693_77396078_77396148_77396203_77396329_77396417_77396505_77396580_77396705_77396889_77397004_77397069_77397221
48828	chr11	+	786	2	Antisense	novelGene_ENSMUSG00000020719.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTTGCTTTATGTTATT	NA	False	NA	NA	False	NA	NA	NA	106672376	106673374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296
48829	chr1	-	2054	12	NNC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	-1	-11	intron_retention	FALSE	canonical	3	10	junction_9	35.543478205927	15	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAGAGCTTGGTTTGCTCT	5255	False	NA	NA	False	NA	NA	NA	171108694	171104575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107576_171107713_171107846_171107961_171108097_171108247_171108343_171108446
48830	chr13	-	1751	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	6	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	650.840421637954	3	83	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTATCCCTGAATCAA	NA	False	NA	NA	False	NA	NA	NA	97334797	97312922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317675_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
48831	chr12	-	1812	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	4	1562	0	2	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	462	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGTAGTGAGCAGATG	NA	False	NA	NA	False	NA	NA	NA	40273184	40253127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
48832	chr5	-	1070	8	NNC	ENSMUSG00000025747.13	novel	3884	8	NA	NA	0	246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	649.653502622273	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCAATGGGCCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	30278579	30265815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358_30278396_30278461
48834	chr15	-	1849	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	-705	0	-705	0	multi-exon	FALSE	canonical	3	371	junction_1	0	1710	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGCCTCCTTGCCC	7379	False	NA	NA	False	NA	NA	NA	78290812	78283755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_78284231_78289438
48835	chr13	+	3940	16	NNC	ENSMUSG00000021611.10	novel	4313	16	NA	NA	-12	-24	intron_retention	FALSE	non_canonical	0	0	junction_1	9.09065454189081	3	97	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAATAAAGAGTAAATCAT	2111	False	NA	NA	False	NA	NA	NA	73775017	73797938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_73775113_73775580_73776794_73782270_73782467_73783538_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028
48836	chr3	-	1595	3	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	70	-4	intron_retention	FALSE	canonical	3	878	junction_1	31	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTGGAGTCTTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	87965732	87963830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_87964084_87964292_87965339_87965436
48837	chr6	-	2642	14	NNC	ENSMUSG00000055799.14	novel	1888	13	NA	NA	21	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	129.634671014332	294	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCAAGACCGTCTCTGGA	4844	False	NA	NA	False	NA	NA	NA	72766216	72603367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72625783_72625826_72626102_72626187_72765193_72765322_72765544_72765609_72765692_72765750_72766163
48838	chr10	-	2588	8	FSM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	134	2	134	-2	multi-exon	FALSE	canonical	3	789	junction_2	110.417205107146	414	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGACGGTCGTACTCGT	8739	False	NA	NA	False	NA	NA	NA	117681806	117649777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117651686_117653248_117653366_117654370_117654515_117656366_117656508_117657494_117657552_117658705_117658775_117660498_117660580_117681735
48839	chr8	+	2715	16	NIC	ENSMUSG00000036270.17	novel	4780	29	NA	NA	-20	-357	intron_retention	FALSE	canonical	3	268	junction_14	56.407091752722	2	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTCGAACCCGTTCTCC	3306	False	NA	NA	False	NA	NA	NA	106607562	106615807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106607791_106611132_106611290_106611664_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735
48840	chr4	-	2751	23	NNC	ENSMUSG00000028559.18	novel	2903	24	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	131.270964480735	1	137	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAATATGTTTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	109059431	108918853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930021_108930130_108930233_108930311_108940264_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013912_109029466_109029522_109059301
48841	chr17	+	471	3	NNC	ENSMUSG00000024406.17	novel	688	3	NA	NA	634	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1897.5	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGACACACAGTAGATAG	6473	False	NA	NA	False	NA	NA	NA	35820351	35821652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35820436_35820877_35820951_35821338
48843	chr17	+	1873	3	Intergenic	novelGene_52	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	57.5	1	106	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCTTCTAAGGGATGCA	NA	False	NA	NA	False	NA	NA	NA	17399656	17426481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399667_17423325_17423387_17424679
48844	chrX	-	2590	5	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2594	-11	at_least_one_novel_splicesite	FALSE	canonical	1	35	junction_1	20.9568008054665	286	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGAATGTTCTGGCTATG	NA	False	NA	NA	False	NA	NA	NA	72083303	72077604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72077934_72078769_72080775_72080892_72080952_72081548_72081672_72083229
48845	chr6	-	1223	5	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	60	-123	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	816.80413808942	3	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	NA	False	NA	NA	NA	124791057	124787677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124789245_124789500_124789583_124789669_124789752_124789877_124790970
48847	chr4	+	652	1	Antisense	novelGene_ENSMUSG00000055296.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGGCCATCCAGGAGAT	NA	False	NA	NA	False	NA	NA	NA	56872129	56872781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_56872100_56872800
48848	chr7	+	2406	15	NIC	ENSMUSG00000051768.10	novel	2155	17	NA	NA	7	-19	intron_retention	FALSE	canonical	3	337	junction_4	32.2522740853024	103	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGGAGACTTTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	24246632	24272840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265926_24266282_24266393_24266463_24266570_24266738_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
48849	chr9	-	3041	22	ISM	ENSMUSG00000032198.10	ENSMUST00000217515.2	3130	24	0	5669	0	-5669	5prime_fragment	FALSE	canonical	3	152	junction_8	19.8113552266968	68	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTTATGTGTACATCT	6273	False	NA	NA	False	NA	NA	NA	21763914	21741210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
48850	chrX	+	3140	14	NIC	ENSMUSG00000031398.14	novel	6943	33	NA	NA	-621	-192	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	8.93169345247552	1	79	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGGTCAGTGCATGTCT	NA	False	NA	NA	False	NA	NA	NA	73381250	73388097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73381427_73381516_73381661_73381739_73381975_73382064_73382208_73382295_73382553_73382675_73382743_73382847_73382995_73383380_73383485_73383670_73383768_73384036_73384228_73384448_73384619_73385141_73385355_73385526_73385678_73387052
48851	chr7	-	2385	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	87	8	49	-8	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	157	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCGTATCATGTGGATTC	NA	False	NA	NA	False	NA	NA	NA	23999013	23990471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
48852	chr9	+	2649	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	61	-8	14	8	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	294	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGGTCTGATCCCCA	NA	False	NA	NA	False	NA	NA	NA	107926501	107930008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
48853	chr12	-	1680	4	NNC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	7	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77008952	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76985218_76985284_76985530_76986203_76986278_77008763
48854	chr11	-	1818	8	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	685.118491166875	2548	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTAGCAGTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	17161563	17153202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_17154002_17154500_17154572_17158380_17158665_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
48855	chr2	+	1499	10	FSM	ENSMUSG00000023572.17	ENSMUST00000099489.9	1632	10	119	14	95	-14	multi-exon	FALSE	canonical	3	138	junction_5	15.8464857653396	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAAATGTGTCATTTAAT	NA	False	NA	NA	False	NA	NA	NA	120839047	120847371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
48856	chr13	-	3367	12	NNC	ENSMUSG00000021215.16	novel	2680	12	NA	NA	37	115	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	75.4933087725097	1	99	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATAACCCAAAACATTTC	NA	False	NA	NA	False	NA	NA	NA	3968141	3932574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_3934474_3934802_3934990_3936047_3936219_3936533_3936796_3937370_3937448_3937566_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3957796_3957857_3962867_3962935_3967937
48857	chr5	-	1914	9	NNC	ENSMUSG00000029209.16	novel	1894	7	NA	NA	21	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	60.8048877558375	11	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTCATTTTCTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	69749568	69732340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_69733297_69735320_69735496_69736850_69737036_69739572_69739637_69742316_69742500_69743807_69743910_69746680_69746749_69747003_69747167_69749550
48859	chr7	-	2396	13	NNC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	6	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	92.5306255607659	5	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTTTAAATTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	105401436	105395140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_105395943_105396145_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
48860	chr10	-	949	2	Antisense	novelGene_ENSMUSG00000004207.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCAGCAGCTTATAGGC	NA	False	NA	NA	False	NA	NA	NA	60138354	60136593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_60136661_60137472
48862	chr6	+	1489	6	NNC	ENSMUSG00000029910.15	novel	7557	6	NA	NA	0	322	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	369.381970323404	137	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAACAAGGGTGGTACAG	NA	False	NA	NA	False	NA	NA	NA	66512408	66518326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66517013_66517642
48863	chr6	-	3113	11	NNC	ENSMUSG00000038784.14	novel	3337	11	NA	NA	0	-177	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	66.6649083101447	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGTTCTGAGCAGTGGAC	7655	False	NA	NA	False	NA	NA	NA	35110650	35022107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045519_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
48864	chr4	+	1205	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	79	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	133.478462682187	358	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576952	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801_147597066_147599865
48866	chr19	-	2144	20	NNC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-2	-193	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	527.524932127971	1	119	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTACACCAGAAGGAGGG	5138	False	NA	NA	False	NA	NA	NA	53026993	52979806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998494_52998606_53000205_53000341_53000625_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
48868	chr16	-	3523	11	ISM	ENSMUSG00000022974.13	ENSMUST00000023698.12	2732	18	11582	36	-1766	-36	3prime_fragment	FALSE	canonical	3	97	junction_10	76.0959920100921	71	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTATATTAATACCGTGTC	NA	False	NA	NA	False	NA	NA	NA	90829470	90811839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827303
48870	chr3	-	1520	1	Antisense	novelGene_ENSMUSG00000038861.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTATAGCCCTGGCTGTC	NA	False	NA	NA	False	NA	NA	NA	94892458	94890938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_94890900_94892500
48872	chr8	-	3623	22	NNC	ENSMUSG00000000759.15	novel	3797	22	NA	NA	0	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	50.5328522943019	1	213	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAACCATTATCTTT	NA	False	NA	NA	False	NA	NA	NA	12722123	12664300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674913_12675006_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690706_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
48873	chr8	-	2735	16	NNC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-93	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	583.472364384124	1	107	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACTTCTTGGGTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	96466542	96446774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455207_96455361_96455711_96455876_96457038_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435
48874	chr16	+	2747	5	NIC	ENSMUSG00000022721.20	novel	2235	12	NA	NA	185	1	intron_retention	FALSE	canonical	2	5	junction_4	118.870728104105	8	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTCTGTGGTGAACCAG	633	False	NA	NA	False	NA	NA	NA	18067110	18071363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18067898_18068317_18068427_18068683_18069135_18069222_18069525_18070265
48875	chr17	+	3135	21	FSM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	-39	10	38	4	multi-exon	TRUE	canonical	3	422	junction_6	66.4862955803675	160	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCCTTTACTTCAGACTT	8023	False	NA	NA	False	NA	NA	NA	56892019	56913284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
48876	chr4	-	1674	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	769.39914218824	1	85	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	33	False	NA	NA	False	NA	NA	NA	41098149	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41094000_41094265_41094328_41094700_41094839_41095144_41095272_41098001
48877	chr1	-	2526	14	NNC	ENSMUSG00000026571.13	novel	4110	19	NA	NA	-15953	1	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_13	12.3547178541008	18	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTGACTTTTTATTTA	4702	False	NA	NA	False	NA	NA	NA	165232283	165157072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165165914_165167453_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165232135
48878	chr10	-	3336	4	FSM	ENSMUSG00000048240.15	ENSMUST00000092285.10	3362	4	21	5	9	0	multi-exon	FALSE	canonical	2	3	junction_3	3.68178700572909	50	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGTCTCGACTCTAAAT	4465	False	NA	NA	False	NA	NA	NA	80850738	80784462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80787581_80788664_80788781_80833825_80833879_80850689
48879	chr4	+	2395	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	5	4242	5	-4242	multi-exon	TRUE	canonical	3	103	junction_2	16.4614577676685	125	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTAAGATTATCTACATT	-5	True	NA	NA	False	NA	NA	NA	6191102	6217446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
48880	chr2	-	2616	3	ISM	ENSMUSG00000050619.15	ENSMUST00000163766.8	3611	6	-17	4945	-17	-500	5prime_fragment	FALSE	canonical	3	33	junction_1	2	123	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTTTTCATTATCTT	NA	False	NA	NA	False	NA	NA	NA	121001623	120996121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_120997200_120999679_120999885_121000290
48881	chr3	+	1387	5	NIC	ENSMUSG00000091512.6	novel	733	7	NA	NA	0	-3	intron_retention	FALSE	canonical	1	5	junction_3	115.486741663275	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAATGAGCTCTGTATAGG	60	False	NA	NA	False	NA	NA	NA	137624266	137634523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_137624680_137625681_137625717_137630872_137630932_137633107_137633172_137633707
48882	chr11	-	1154	9	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	19	-37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	455.086736238269	1	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAACCTTTTACATTAAAC	NA	False	NA	NA	False	NA	NA	NA	119190896	119179226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185458_119190676
48883	chr17	-	3332	10	FSM	ENSMUSG00000023903.9	ENSMUST00000024696.9	4528	10	307	889	7	-20	multi-exon	FALSE	canonical	0	0	junction_2	0.628539361054709	18	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATAAACTAAATACATCCT	NA	False	NA	NA	False	NA	NA	NA	23863944	23848173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23849811_23849979_23850238_23850316_23850470_23850764_23850848_23851522_23851608_23851707_23851885_23858726_23859017_23859112_23859249_23863012_23863146_23863564
48886	chr11	-	2728	2	ISM	ENSMUSG00000018537.17	ENSMUST00000134003.2	811	5	-2300	1340	-2300	-1340	intron_retention	FALSE	canonical	3	210	junction_1	0	2	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAGAAGGTGAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	97585535	97582693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97582739_97582852
48888	chr3	-	2191	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	-32	2	-30	-2	multi-exon	FALSE	canonical	3	87	junction_1	0	337	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTACCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	41447657	41442115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_41444172_41447522
48889	chr2	-	2115	5	NIC	ENSMUSG00000044627.12	novel	919	6	NA	NA	-5	0	intron_retention	FALSE	canonical	3	10	junction_1	1531.40988961153	5	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32178048	32168827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32170523_32170720_32170816_32171697_32171823_32177608_32177658_32177897
48891	chr17	-	2557	12	FSM	ENSMUSG00000059811.14	ENSMUST00000112437.8	3371	12	143	671	71	0	multi-exon	FALSE	canonical	3	19	junction_11	103.456941975757	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAAGTTGTGATTCTTTTT	3894	False	NA	NA	False	NA	NA	NA	80203409	80156491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80203337
48892	chr2	-	1162	1	Intergenic	novelGene_2862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTAAGTGATAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	180556232	180555070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_180555100_180556200
48893	chr2	-	1483	6	FSM	ENSMUSG00000002458.14	ENSMUST00000002532.9	1511	6	28	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	20.8461027532726	434	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	NA	False	NA	NA	NA	181335742	181330214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
48894	chr17	-	2395	1	Intergenic	novelGene_133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	88	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAATTGTTGCAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	32773290	32770895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_32770900_32773300
48895	chr2	-	1540	12	NIC	ENSMUSG00000026958.14	novel	1682	13	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	3	44	junction_4	73.3482579353372	5	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTCTAGTAGGATCCAT	9023	False	NA	NA	False	NA	NA	NA	25246349	25242302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
48896	chr14	-	1765	7	NIC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	18	-566	intron_retention	FALSE	canonical	3	1848	junction_4	452.088118254248	5	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1706	False	NA	NA	False	NA	NA	NA	19873874	19861984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19867216_19869974_19870075_19872633_19872759_19873736
48897	chr11	+	2050	10	FSM	ENSMUSG00000056938.17	ENSMUST00000092559.13	2083	10	33	0	3	0	multi-exon	FALSE	canonical	3	48	junction_2	33.6455746177417	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	NA	False	NA	NA	NA	102992540	103003026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
48898	chr3	-	3424	8	NIC	ENSMUSG00000038766.17	novel	8661	10	NA	NA	8	908	combination_of_known_splicesites	FALSE	canonical	3	9	junction_7	6.73704349860091	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGTGGGACACTGGTG	8946	False	NA	NA	False	NA	NA	NA	95125057	95093991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95096287_95096464_95096596_95097863_95098050_95107451_95107603_95111041_95111237_95111951_95112120_95113773_95113914_95124899
48899	chr13	+	1611	4	NNC	ENSMUSG00000021537.10	novel	1226	5	NA	NA	64	-2	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_2	628.768814606945	11	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACAATAGTCTGGAACA	NA	False	NA	NA	False	NA	NA	NA	81932013	81945272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_81932896_81934961_81935077_81940152_81940267_81944772
48900	chr7	+	2920	3	FSM	ENSMUSG00000043831.13	ENSMUST00000058771.13	2898	3	-20	-2	-8	2	multi-exon	FALSE	canonical	3	45	junction_1	19.5	71	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACATGATTCTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	66872335	66878206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_66872378_66873356_66873640_66875611
48901	chr5	-	1365	2	Genic_Genomic	ENSMUSG00000047501.4	novel	1816	1	NA	NA	4	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGGGCTGTTCTCTAT	NA	False	NA	NA	False	NA	NA	NA	134975784	134973977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_134974462_134974903
48903	chr12	-	2571	12	Intergenic	novelGene_4426	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	167	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCCCTAGAGGTCTCACC	NA	False	NA	NA	False	NA	NA	NA	83781869	83734957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_83735066_83746126_83746194_83746372_83746424_83759075_83759329_83761537_83761678_83769762_83769832_83771268_83771490_83774998_83775097_83775469_83775559_83777312_83777487_83778447_83778567_83780687
48904	chr7	-	2540	6	FSM	ENSMUSG00000030798.16	ENSMUST00000209779.2	2541	6	-11	12	-11	-6	multi-exon	FALSE	canonical	3	78	junction_5	4.63033476111609	30	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTGGCTTTTTTTT	4433	False	NA	NA	False	NA	NA	NA	44888250	44883072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
48905	chr8	+	3730	1	NIC	ENSMUSG00000033009.16	novel	5310	13	NA	NA	-6	1531	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTCTTCTTTGCATGTGC	NA	False	NA	NA	False	NA	NA	NA	94763881	94767611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_94763900_94767600
48906	chrX	-	796	7	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7088.05188719408	5	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229261_101230037_101230174_101230960_101231059_101231427_101231544_101231899_101231978_101232903
48907	chr6	-	1120	5	FSM	ENSMUSG00000004268.12	ENSMUST00000142187.8	917	5	-131	-72	-22	-4	multi-exon	FALSE	canonical	3	1245	junction_4	110.261904119238	141	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTCTTTTTCAGACC	NA	False	NA	NA	False	NA	NA	NA	124689163	124681348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124681622_124681901_124682180_124682477_124682620_124682703_124682806_124688838
48908	chr6	-	2268	2	FSM	ENSMUSG00000059878.13	ENSMUST00000079749.6	3187	2	14	905	14	1	multi-exon	FALSE	canonical	3	68	junction_1	0	18	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACTATCTATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	116605946	116601881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_116604095_116605891
48909	chr11	-	2629	16	NNC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	367	1150	intron_retention	FALSE	canonical	0	0	junction_1	98.707288934956	1	134	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAATGTGAGTGCCAGCCT	NA	False	NA	NA	False	NA	NA	NA	117670107	117659753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_117659856_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666874_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988
48910	chr10	+	2533	9	FSM	ENSMUSG00000019831.15	ENSMUST00000019975.14	2609	9	58	18	58	-18	multi-exon	FALSE	canonical	3	17	junction_1	81.4024531264261	127	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTTCATTTTAAAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	40759528	40814547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_40759606_40796243_40796405_40802479_40802615_40806626_40806781_40807911_40808030_40809108_40809282_40810472_40810653_40812105_40812735_40813641
48911	chr16	-	2734	1	NIC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-29	-1118	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	16	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCCAAACTTGAAATGTAG	992	False	NA	NA	False	NA	NA	NA	11021157	11018423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_11018400_11021200
48913	chr11	-	2463	17	NNC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	82	197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	180.676236245252	1	109	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGCATTTTGAATAGTT	1212	False	NA	NA	False	NA	NA	NA	107080096	107057988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062512_107064032_107064288_107064429_107064556_107066391_107066574_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077638_107077749_107079942
48914	chr7	-	1885	18	NNC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-23	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.609930911054	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTATAGTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	27055402	27041559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27041675_27041932_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
48915	chr19	+	2227	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	80	342	39	200	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	1	101	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACCATAGGCCAGCCTGG	914	False	NA	NA	False	NA	NA	NA	6414031	6426884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
48916	chr7	+	1455	4	NIC	ENSMUSG00000025508.14	novel	964	5	NA	NA	-34	-1	intron_retention	FALSE	canonical	3	11307	junction_1	1717.7060283995	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGCCTTTAAACATTTT	2083	False	NA	NA	False	NA	NA	NA	141027248	141031261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_141027621_141027820_141028688_141030916_141031016_141031144
48917	chr7	-	1789	2	FSM	ENSMUSG00000044786.7	ENSMUST00000051241.7	2790	2	998	3	0	-3	multi-exon	FALSE	canonical	3	36	junction_1	0	226	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGATGAAATTTGTCTTT	6671	False	NA	NA	False	NA	NA	NA	28078680	28076211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28077919_28078598
48918	chr7	+	3202	6	FSM	ENSMUSG00000074165.11	ENSMUST00000098508.9	3775	6	-22	595	-1	4	multi-exon	FALSE	canonical	3	5	junction_2	16.2677595261302	149	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATATGTTTTCATTTTTC	NA	False	NA	NA	False	NA	NA	NA	41282978	41300359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_41283119_41284103_41284135_41292756_41292857_41296914_41297042_41297242_41297304_41297616
48920	chr4	+	1459	7	ISM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	24	1752	7	-43	intron_retention	FALSE	canonical	3	659	junction_3	76.8889892420668	25	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGACCTGGTCTACATGC	NA	False	NA	NA	False	NA	NA	NA	135673782	135688176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287
48921	chr1	+	3314	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	-46	11	-30	-8	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	2	161	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACCTTAAACCGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	34889026	34918650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
48922	chr14	+	1439	8	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	-10420	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	243.750374149373	19	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTATGGTTTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	122408695	122639643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122408985_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
48923	chr5	-	2718	6	FSM	ENSMUSG00000033970.16	ENSMUST00000145106.8	2726	6	10	-2	3	-1	multi-exon	FALSE	canonical	3	318	junction_1	17.4539393834171	37	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATCATTTGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	151574657	151566286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
48924	chr1	-	1556	8	NNC	ENSMUSG00000040843.11	novel	4380	7	NA	NA	-13	651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	204.971675494694	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATGTATTCATAGTTTG	NA	False	NA	NA	False	NA	NA	NA	165064525	165042499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165042982_165043173_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
48925	chr14	+	1819	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	-14	-6	-14	6	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	301	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTACAGAGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	79635197	79661033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
48926	chr3	-	5801	29	NNC	ENSMUSG00000027799.13	novel	10986	58	NA	NA	-9079	-8	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	2.01112974647158	15	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGAATTCACTGATTGT	NA	False	NA	NA	False	NA	NA	NA	55884736	55532627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_55534416_55535862_55536015_55537563_55537761_55539388_55539491_55550157_55550329_55551064_55551221_55553358_55553431_55554776_55554970_55557098_55557189_55572994_55573163_55588318_55588472_55598241_55598362_55603702_55603844_55618047_55618161_55625197_55625314_55630559_55630663_55630952_55631071_55693861_55693999_55712657_55712802_55726703_55726829_55761191_55761359_55764380_55764490_55781139_55781205_55799033_55799096_55841933_55842062_55860456_55860584_55862759_55862915_55875332_55875772_55884546
48927	chr6	-	2686	14	NNC	ENSMUSG00000029924.13	novel	2878	16	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	111.706080947771	1	93	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTACTTAGTCCCTGCTTA	NA	False	NA	NA	False	NA	NA	NA	39349864	39312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39314219_39315682_39315749_39321186_39321335_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349780
48928	chr8	+	2512	9	FSM	ENSMUSG00000008206.17	ENSMUST00000175781.5	2539	9	29	-2	0	2	multi-exon	FALSE	canonical	3	45	junction_8	5.7227615711298	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTCTCTGCGCCAGAGC	NA	False	NA	NA	False	NA	NA	NA	4543481	4574053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4570683_4571173_4571281_4573353_4573511_4573603
48931	chr5	+	1813	6	NIC	ENSMUSG00000029344.16	novel	1835	7	NA	NA	15	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	135.815463037167	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGAGTGAGTAGCTTTC	2367	False	NA	NA	False	NA	NA	NA	112451776	112463220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_112451838_112455431_112456421_112457554_112457754_112459549_112459601_112461107_112461157_112462756
48932	chr2	+	2815	17	Antisense	novelGene_ENSMUSG00000027347.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	7	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAATGGCAAGGTGAGAT	NA	False	NA	NA	False	NA	NA	NA	117112621	117169133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_117113157_117115332_117115716_117116553_117116706_117117322_117117360_117118304_117118452_117119099_117119208_117119825_117119931_117120796_117120884_117122152_117122421_117124232_117124354_117125191_117125364_117128942_117129097_117130923_117131053_117132438_117132505_117136258_117136371_117168760_117168941_117169074
48933	chr1	+	959	7	NNC	ENSMUSG00000026254.18	novel	1119	7	NA	NA	96	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	878.900386215007	5	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGCTTGTCTCATGCT	NA	False	NA	NA	False	NA	NA	NA	87142103	87155779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87142218_87147302_87147429_87148709_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
48934	chr13	+	3719	4	Antisense	novelGene_ENSMUSG00000114343.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	33.4697209761633	2	161	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGGGATGTTGCATCAAG	NA	False	NA	NA	False	NA	NA	NA	66460140	66615106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66460276_66609909_66610037_66610237_66610430_66611841
48937	chr9	+	2104	2	FSM	ENSMUSG00000054693.15	ENSMUST00000145377.2	826	2	-1484	206	-1484	-206	multi-exon	FALSE	canonical	3	243	junction_1	0	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAAATGATACCCTTACA	2716	False	NA	NA	False	NA	NA	NA	70681850	70685454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_70683782_70685281
48938	chr7	+	1063	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	169	0	169	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396563	51397626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396600_51397600
48939	chr10	-	1393	10	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	152.911577773836	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5786	False	NA	NA	False	NA	NA	NA	62859668	62851206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851494_62851580_62851619_62851854_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
48940	chr11	-	2782	2	Intergenic	novelGene_2200	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	18	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATTCCACACTGGGCAG	NA	False	NA	NA	False	NA	NA	NA	4887121	4883770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_4883883_4884451
48941	chr11	-	1581	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	49	3	-42	-3	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	2287	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCATGTGTCCTGGTCC	NA	False	NA	NA	False	NA	NA	NA	6394394	6377231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
48943	chr4	+	3685	10	ISM	ENSMUSG00000078716.11	ENSMUST00000107866.9	5102	13	11191	452	6237	-176	3prime_fragment	FALSE	canonical	2	4	junction_6	2.76664435510861	14	30	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGAGTACTGAATAAAGTA	NA	False	NA	NA	False	NA	NA	NA	43680696	43692216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_43680793_43681045_43681315_43681958_43682285_43685296_43685391_43685525_43685650_43685727_43685871_43686010_43686190_43689426_43689574_43689690_43689808_43690026
48945	chr11	+	2804	2	FSM	ENSMUSG00000002064.11	ENSMUST00000133020.2	586	2	-1860	-358	-1387	-21	multi-exon	FALSE	canonical	3	225	junction_1	0	29	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAAGACTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	78139859	78146301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78142039_78145676
48950	chr19	+	1192	1	Antisense	novelGene_ENSMUSG00000024889.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCACCCCTTGACTGCCT	NA	False	NA	NA	False	NA	NA	NA	4672620	4673812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_4672600_4673800
48951	chr10	-	1944	12	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	37	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	568.573145239558	3	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTTCCTTTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	85793650	85774508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_85774977_85777758_85777866_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
48952	chr10	-	1145	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1852.60849746998	3	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959837	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955470_90957854_90957906_90959419_90959569_90959773
48953	chr7	-	1796	4	ISM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	28719	0	15539	0	3prime_fragment	FALSE	canonical	3	986	junction_3	56.5705066463278	614	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAGGGTTGAAACCCT	NA	False	NA	NA	False	NA	NA	NA	25425463	25420589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348
48954	chr11	-	1563	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	17	-1	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	43	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTCTTTGCTTCTGTC	4539	False	NA	NA	False	NA	NA	NA	102047156	102043372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
48955	chr3	-	2842	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	-10	-544	3	215	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	242	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAGTCTACTTTTTCATC	NA	False	NA	NA	False	NA	NA	NA	10505157	10482661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
48956	chr4	-	1137	6	NIC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	4	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	269.910059093766	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTTTCTCGTTATACC	NA	False	NA	NA	False	NA	NA	NA	134642331	134625161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_134625788_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
48957	chr4	+	1254	8	NIC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	73	-8	combination_of_known_splicesites	FALSE	canonical	2	18	junction_6	156.507807720736	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTGGACCCATGAAGCC	NA	False	NA	NA	False	NA	NA	NA	152262663	152356296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152345302_152345488_152355930
48958	chr19	-	2282	4	FSM	ENSMUSG00000024944.7	ENSMUST00000134821.2	2305	4	4	19	4	-7	multi-exon	FALSE	canonical	3	648	junction_1	55.8091987638836	140	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCAGTTCCTGGCTGAG	NA	False	NA	NA	False	NA	NA	NA	6191166	6184422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6184832_6186008_6187671_6187759_6187871_6191066
48959	chr2	+	3339	21	NNC	ENSMUSG00000027624.21	novel	5904	21	NA	NA	141	835	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	41.2362401292843	1	164	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTATGCAGCTGACATTT	7985	False	NA	NA	False	NA	NA	NA	156263172	156382741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156263220_156280450_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352676_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
48960	chr1	-	1899	11	NNC	ENSMUSG00000046337.18	novel	1659	10	NA	NA	-110	7	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_8	39.9335698379196	202	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAACGCCTAATTTT	NA	False	NA	NA	False	NA	NA	NA	36722374	36639049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
48961	chr4	-	1739	10	NNC	ENSMUSG00000009640.12	novel	1771	10	NA	NA	14	-5	intron_retention	FALSE	non_canonical	0	0	junction_9	76.3361636221209	132	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACTGGGCTGATTGTTT	NA	False	NA	NA	False	NA	NA	NA	117539436	117531887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539183_117539410
48963	chr12	+	1359	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	400	14	400	-14	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	53	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCCTTAAATGTGCC	NA	False	NA	NA	False	NA	NA	NA	8972063	8988728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
48964	chr9	+	3646	10	ISM	ENSMUSG00000032816.16	ENSMUST00000213533.2	6220	20	26922	703	26873	-703	3prime_fragment	TRUE	canonical	3	6	junction_3	2.94811092476036	1	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACTTCTATAGCATTCAA	2911	False	NA	NA	False	NA	NA	NA	65035689	65044519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_65035987_65036061_65036164_65037844_65038029_65038625_65038754_65038890_65039062_65039207_65039346_65040332_65040439_65040921_65041151_65041754_65041920_65042393
48965	chr14	+	1224	8	FSM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	7	0	7	0	multi-exon	FALSE	canonical	3	643	junction_7	45.2372430997437	1005	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	NA	False	NA	NA	NA	122419122	122639646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
48967	chr11	-	801	3	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10549	44	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6439	False	NA	NA	False	NA	NA	NA	69812044	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69810039_69810163_69811988
48968	chr7	+	1585	5	FSM	ENSMUSG00000038618.13	ENSMUST00000209500.2	1560	5	-24	-1	-5	1	multi-exon	FALSE	canonical	3	288	junction_1	22.576259654779	568	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCAGTGTGTCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	140795782	140798569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140798082_140798182
48969	chr7	+	1862	16	FSM	ENSMUSG00000015149.15	ENSMUST00000072965.5	1843	16	-19	0	13	0	multi-exon	FALSE	canonical	3	18	junction_1	28.236776649532	465	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	NA	False	NA	NA	NA	28466172	28488085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
48970	chr11	-	2267	4	FSM	ENSMUSG00000018733.11	ENSMUST00000018877.9	2729	4	28	434	-7	0	multi-exon	FALSE	canonical	3	9	junction_3	22.7596133534821	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGACTTCTTGAAGTT	2419	False	NA	NA	False	NA	NA	NA	83189775	83185901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189665
48971	chr16	-	2349	4	NNC	ENSMUSG00000071533.12	novel	2295	5	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	968.279229699092	1	133	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	2809	False	NA	NA	False	NA	NA	NA	55845002	55835869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55837681_55838834_55838891_55842417_55842484_55844586
48972	chrX	-	1253	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	-37	3	-37	-3	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	7539	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTGTTTGTGTCTAACT	NA	False	NA	NA	False	NA	NA	NA	72759818	72729786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
48973	chrX	-	1519	10	NNC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	589.847019296393	1	49	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCAGACTTGTTGGCA	NA	False	NA	NA	False	NA	NA	NA	72140616	72129908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130523_72130570_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
48974	chr6	-	1579	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	47	549	0	-82	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	2	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTCCTTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	87828041	87820145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
48975	chr3	+	1773	14	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10297	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	41.7770923328441	43	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACTTCTCCGTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	142418578	142450094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436386_142436470_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
48981	chr1	-	2913	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	0	1799	0	-8	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	591	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCGGAGCTCAGTGTTTC	9509	False	NA	NA	False	NA	NA	NA	171050083	171045378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
48983	chr7	+	1816	4	NNC	ENSMUSG00000066647.9	novel	5117	3	NA	NA	13	329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	13.29995822884	748	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAAGATTTTTTAAAAA	9202	False	NA	NA	False	NA	NA	NA	29869312	29878614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29869640_29875275_29875372_29877068_29878284_29878436
48984	chr14	+	1778	12	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	3	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	799.361594447523	1	79	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAGAAAAAAATTAATCCT	NA	False	NA	NA	False	NA	NA	NA	30271170	30295565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290935_30291097_30291912_30292070_30292159_30292223_30294164_30294288_30295293
48985	chr4	+	1349	12	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	338.008680019604	69	4	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAGAAAATGCTGAGCCC	6627	False	NA	NA	False	NA	NA	NA	135975286	136002204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135975429_135978566_135978693_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
48986	chr10	-	2452	8	ISM	ENSMUSG00000020078.17	ENSMUST00000092473.5	2712	9	5888	42	5888	0	3prime_fragment	FALSE	canonical	3	953	junction_7	51.2345546661307	1	129	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTAAGTTTGTAGTT	NA	False	NA	NA	False	NA	NA	NA	62316489	62291055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336
48987	chr7	+	1787	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	946	31	-112	-31	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCATGGCCCTAGAGTC	NA	False	NA	NA	False	NA	NA	NA	16516210	16532168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
48988	chr6	+	1732	1	NIC	ENSMUSG00000004285.13	novel	703	2	NA	NA	705	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	15	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAAATGGGTACTGGTA	677	False	NA	NA	False	NA	NA	NA	29468771	29470503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_29468800_29470500
48989	chrX	-	3040	13	NNC	ENSMUSG00000067369.13	novel	3119	13	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	14.4132944032777	5	107	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTATCTCTAGTCCAT	NA	False	NA	NA	False	NA	NA	NA	133177654	133123844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141104_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
48990	chr5	-	1488	2	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	37	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGCCCGGAGAGTTACT	NA	False	NA	NA	False	NA	NA	NA	36954079	36952257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36953245_36953578
48992	chr3	-	5034	20	NNC	ENSMUSG00000028184.13	novel	5509	20	NA	NA	-423	-349	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	8.47319384001189	1	112	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAGAGTTTGGAGAAA	NA	False	NA	NA	False	NA	NA	NA	148695541	148522077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_148523565_148528623_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198_148660372_148695518
48994	chr14	-	1918	2	Intergenic	novelGene_568	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTAGATAATGATTTCTT	8154	False	NA	NA	False	NA	NA	NA	51042514	51037937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_51038148_51040806
48996	chrX	+	1938	5	Intergenic	novelGene_3996	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	43	junction_1	6.49519052838329	75	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGCTGTTCTGGAACT	9294	False	NA	NA	False	NA	NA	NA	100739477	100749480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_100739530_100743172_100743346_100744532_100744567_100747004_100747088_100747884
48997	chr4	-	1409	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	6	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATGCTACAGGAACTTC	5	True	NA	NA	False	NA	NA	NA	41098177	41092737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093211_41093544_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
48998	chr2	+	1753	16	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	10	-5581	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_15	150.680972772131	10	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTTCGTGGGTTATAAA	NA	False	NA	NA	False	NA	NA	NA	51962853	51982875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51982795
48999	chr7	-	2870	1	FSM	ENSMUSG00000025484.10	ENSMUST00000210157.2	1882	1	-8	-980	6	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	8	77	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGAAGTTCCGTGCCCG	NA	False	NA	NA	False	NA	NA	NA	140436191	140433321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140433300_140436200
49003	chr8	-	2755	4	NIC	ENSMUSG00000025591.7	novel	3150	7	NA	NA	0	2801	intron_retention	FALSE	canonical	3	740	junction_2	97.6569961082609	3	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTTCACTGTTAAAGTG	NA	False	NA	NA	False	NA	NA	NA	66939173	66932245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_66933141_66934114_66934200_66935157_66936823_66939063
49004	chr12	+	2663	3	FSM	ENSMUSG00000044715.8	ENSMUST00000051934.7	2720	3	48	9	31	-9	multi-exon	FALSE	canonical	3	113	junction_2	9.5	3	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTTGAGTTGAGCATAA	NA	False	NA	NA	False	NA	NA	NA	105651690	105669273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105651718_105664976_105665236_105666896
49006	chr7	-	2783	8	FSM	ENSMUSG00000030966.14	ENSMUST00000033264.12	2793	8	8	2	8	-1	multi-exon	FALSE	canonical	3	11	junction_3	2.61861468283191	46	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGCTTCTTTCATTCTA	NA	False	NA	NA	False	NA	NA	NA	102214685	102207129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_102208871_102209174_102209276_102209799_102209823_102210994_102211226_102212472_102212569_102212900_102213333_102213478_102213548_102214595
49007	chr5	-	2905	15	NNC	ENSMUSG00000001847.15	novel	4159	6	NA	NA	13417	39050	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	62	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCCGCGCATGCGCCT	NA	False	NA	NA	False	NA	NA	NA	143489946	143450338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143450530_143452705_143452858_143458699_143458872_143460365_143460625_143464164_143464287_143467379_143467510_143469974_143470106_143472900_143472985_143475679_143475758_143479910_143479993_143480295_143480422_143486721_143486792_143486877_143486951_143488614_143488862_143488958
49008	chr8	-	1843	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-255	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	432.637550381379	1	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGTCTTCCCTATT	NA	False	NA	NA	False	NA	NA	NA	85573498	85568733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569666_85570693_85570817_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
49009	chr5	-	1181	9	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	-3	412	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	545.359743655507	75	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTAAGCCTTTGAGCTAC	NA	False	NA	NA	False	NA	NA	NA	25047610	25008252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182_25047345_25047503
49010	chr2	-	3214	30	ISM	ENSMUSG00000040479.13	ENSMUST00000111303.2	4169	32	5559	-4	389	1	3prime_fragment	FALSE	canonical	3	212	junction_9	28.4223288149922	143	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTTCTTTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	91775213	91763167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105
49011	chrX	+	1008	2	FSM	ENSMUSG00000009995.18	ENSMUST00000149055.8	2891	2	11	1872	1	46	multi-exon	FALSE	canonical	3	265	junction_1	0	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGAGCTGCTCCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	73326366	73327621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73327007_73327253
49012	chr15	+	1793	15	NNC	ENSMUSG00000097057.2	novel	4343	2	NA	NA	-2575	3680	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	85	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGACCAGCGCTGTCGTAA	3025	False	NA	NA	False	NA	NA	NA	77843298	77855006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_77843323_77843711_77843998_77844157_77844295_77845809_77845943_77846043_77846134_77846640_77846769_77847376_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852424_77852657_77852792_77854884
49013	chr16	+	2384	11	NIC	ENSMUSG00000003234.17	novel	3090	21	NA	NA	-173	-7	intron_retention	FALSE	canonical	3	293	junction_6	12.8378347083922	2	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGATCTCTTTTGCCTC	NA	False	NA	NA	False	NA	NA	NA	20370237	20379561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20378483_20378664_20378798_20378932
49014	chr14	-	2308	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	15	915	-6	-915	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	128	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAAAATAATTTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	67246311	67223602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
49015	chr9	+	2572	13	NIC	ENSMUSG00000032411.16	novel	1713	14	NA	NA	43	-17	combination_of_known_junctions	FALSE	canonical	3	208	junction_3	91.9133045622643	119	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGCATTTCAAACTAAC	NA	False	NA	NA	False	NA	NA	NA	96078475	96201017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
49016	chr2	-	2705	6	NIC	ENSMUSG00000027371.11	novel	1462	7	NA	NA	3	-13	intron_retention	FALSE	canonical	3	84	junction_4	10.5754432531218	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAGAGTTGCAGTTTAG	NA	False	NA	NA	False	NA	NA	NA	127286474	127278148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_127278327_127278465_127278554_127278656_127280490_127282305_127282523_127283793_127284045_127286336
49017	chr4	+	1540	2	NNC	ENSMUSG00000028426.11	novel	2176	2	NA	NA	11	-716	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGATGTACCATGTTT	2	True	NA	NA	False	NA	NA	NA	55350062	55391521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_55350197_55390115
49018	chr1	-	1194	5	FSM	ENSMUSG00000073643.12	ENSMUST00000048820.14	717	5	69	-546	21	546	multi-exon	FALSE	canonical	3	590	junction_1	81.1984451821585	29	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACACTTGGTTCATGGAT	NA	False	NA	NA	False	NA	NA	NA	79739417	79703573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
49020	chr8	+	3353	13	Fusion	ENSMUSG00000031629.15_ENSMUSG00000110270.2	novel	2931	13	NA	NA	5045	11223	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	158	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACCAGAGCTTGAAACCC	NA	False	NA	NA	False	NA	NA	NA	47031252	47070221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_47032196_47034464_47034518_47034600_47034769_47039376_47039486_47039640_47039730_47043248_47043342_47045644_47046738_47052756_47052902_47058119_47058248_47060838_47060937_47063474_47063665_47065412_47065481_47070045
49021	chr9	-	640	2	ISM	ENSMUSG00000076138.3_ENSMUSG00000037742.15	ENSMUST00000129380.2	845	3	525	-231	310	-4	3prime_fragment	FALSE	canonical	3	15409	junction_1	0	3	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	9633	False	NA	NA	False	NA	NA	NA	78386473	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239
49022	chr3	-	907	1	Antisense	novelGene_ENSMUSG00000068823.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGCCAACAAAGTAACAGT	NA	False	NA	NA	False	NA	NA	NA	102965502	102964595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_102964600_102965500
49023	chr15	-	1510	4	NIC	ENSMUSG00000055762.17	novel	1624	7	NA	NA	14	0	intron_retention	FALSE	canonical	3	464	junction_2	1249.59095529519	22	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	75781126	75767336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75768590_75768668_75768769_75772980_75773105_75781093
49024	chr7	-	2508	10	NIC	ENSMUSG00000019082.19	novel	2811	10	NA	NA	-9	-50	intron_retention	FALSE	canonical	2	6	junction_5	40.1690870640043	2	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTGTAACTTTTTGTGT	497	False	NA	NA	False	NA	NA	NA	141017515	141009718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012526_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
49025	chr10	+	411	1	Intergenic	novelGene_3425	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATCAGGTGTGATGTTC	NA	False	NA	NA	False	NA	NA	NA	38675670	38676081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_38675700_38676100
49026	chr15	+	1302	14	NNC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-19	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	138.018865017039	27	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGCTTTTTCTTTGTG	2208	False	NA	NA	False	NA	NA	NA	102379172	102407318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399224_102407099
49028	chr14	-	3427	11	NIC	ENSMUSG00000041471.10	novel	3317	11	NA	NA	22	-19	combination_of_known_junctions	FALSE	canonical	3	25	junction_8	20.0858158908221	1	81	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATAATTTTTTAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	34032428	33959008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33995443_33995534_34030996_34031052_34032123
49029	chr2	+	2091	13	NNC	ENSMUSG00000041966.19	novel	7739	14	NA	NA	9	333	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	77.9983529028374	7	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATCAATTCTAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	70886110	70920955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_70886192_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
49030	chr10	+	3609	6	FSM	ENSMUSG00000039552.15	ENSMUST00000169670.8	3650	6	-100	141	-100	-141	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	20	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAATGTTTAGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	33781006	33791876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_33781835_33784062_33784298_33785008_33785747_33787501_33787647_33788957_33789076_33790331
49031	chr17	+	2197	19	ISM	ENSMUSG00000007034.16	ENSMUST00000007249.15	2261	21	2810	2	-439	-2	3prime_fragment	TRUE	non_canonical	1	3	junction_2	7.25313895436714	238	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGTTTATGGCTTTATT	148	False	NA	NA	False	NA	NA	NA	35136255	35149330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35136368_35136492_35136572_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
49035	chr8	+	2077	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	209	395	-12	-395	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	1	76	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTCCAGCATTCCAGTT	2366	False	NA	NA	False	NA	NA	NA	70495671	70524602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
49036	chr1	+	2192	4	NNC	ENSMUSG00000026097.10	novel	1910	4	NA	NA	-9	-72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	97.3869715219763	1	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATTATTTTAAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	53336244	53349396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_53336348_53338130_53338657_53344613_53344766_53347985
49037	chr16	-	2183	1	NIC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	7058	-154	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTCATTTCTTCCATT	NA	False	NA	NA	False	NA	NA	NA	56991561	56989378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_56989400_56991600
49039	chr2	+	1538	4	NNC	ENSMUSG00000027313.4	novel	1637	3	NA	NA	0	-63	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	284.592496192168	1128	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAGAATATGGTTTGTCT	7152	False	NA	NA	False	NA	NA	NA	119181709	119184799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119181789_119181824_119182118_119182837_119182874_119183669
49040	chrX	+	1268	4	FSM	ENSMUSG00000002014.13	ENSMUST00000155552.8	619	4	-172	-477	-16	-2	multi-exon	FALSE	canonical	3	1181	junction_1	200.077207319797	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATGAGTACATTCAAGAC	5416	False	NA	NA	False	NA	NA	NA	72830617	72834415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636
49041	chrX	+	2335	7	FSM	ENSMUSG00000063785.13	ENSMUST00000125966.8	2138	7	0	-197	0	197	multi-exon	FALSE	canonical	3	18	junction_6	135.426999605774	97	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCAAGACAGCCAGGGCT	NA	False	NA	NA	False	NA	NA	NA	47345773	47357043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47355291
49043	chr17	-	1197	1	Antisense	novelGene_ENSMUSG00000069135.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGCATGAGAATAAAATGA	NA	False	NA	NA	False	NA	NA	NA	8395546	8394349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_8394300_8395500
49044	chr1	+	3399	6	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	1302	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.9100754023211	2	194	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCAGTGTGTTGCTCGAG	1403	False	NA	NA	False	NA	NA	NA	82318071	82423084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82318534_82320437_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
49045	chr1	-	382	1	FSM	ENSMUSG00000101249.2	ENSMUST00000187117.2	492	1	178	-68	178	68	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	24655100	24654718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24654700_24655100
49046	chr4	-	1484	8	NNC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	23	-273	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_6	652.166655801088	815	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTGAGACTATTTTGAC	NA	False	NA	NA	False	NA	NA	NA	155170805	155158839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167588_155167775_155170661
49047	chr16	-	2261	11	ISM	ENSMUSG00000022948.17	ENSMUST00000233931.2	1826	12	-83	2	-83	1	intron_retention	FALSE	canonical	3	18	junction_10	35.1153812452606	26	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATTTGCAGACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	93400786	93380349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024
49050	chr17	+	4027	25	NNC	ENSMUSG00000036636.11	novel	4071	25	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	38.9429782573901	1	243	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCCAGTATTTTTATT	NA	False	NA	NA	False	NA	NA	NA	25352396	25381072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364743_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368089_25368201_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
49053	chr11	-	1815	1	Antisense	novelGene_ENSMUSG00000023170.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAGCTGAGCGTTAGA	9543	False	NA	NA	False	NA	NA	NA	69807357	69805542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_69805500_69807400
49054	chr6	+	2009	8	NNC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	9	0	intron_retention	TRUE	non_canonical	0	0	junction_1	49.7606516132937	13	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	NA	False	NA	NA	NA	88879289	88889213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88879513_88882922_88883061_88884922_88885055_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887860_88888664
49055	chr15	-	2272	13	NNC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	0	1614	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	173.182205751309	1	77	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTTGTTGTATTTGACC	NA	False	NA	NA	False	NA	NA	NA	38519494	38490103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490344_38490490_38490717_38491719_38491935_38492487_38492601_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
49056	chr7	-	3051	16	NNC	ENSMUSG00000036915.18	novel	3352	15	NA	NA	254	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	12.5563618226866	78	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAAATGTGCTTGTGAAAG	NA	False	NA	NA	False	NA	NA	NA	30156686	30146960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30147880_30149261_30149328_30149802_30149900_30150222_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060_30153189_30153438_30153588_30153662_30153769_30153933_30154085_30154596_30154758_30154889_30155040_30155844_30155995_30156222_30156586_30156632
49057	chr17	+	2258	18	NNC	ENSMUSG00000036552.20	novel	1571	7	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	72.8442904930747	3	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	15261928	15284485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15262096_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270527_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15284246
49058	chr12	+	1725	7	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	41142	26	1843	-26	3prime_fragment	FALSE	canonical	2	4	junction_1	15.3920975395385	61	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGTATTAATTATCCTG	7244	False	NA	NA	False	NA	NA	NA	105713376	105748680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_105713575_105727726_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105747108_105747268_105747929
49059	chr10	+	2804	3	FSM	ENSMUSG00000019960.9	ENSMUST00000020118.5	2796	3	-16	8	-16	-8	multi-exon	TRUE	canonical	2	10	junction_1	0	39	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTATTGAGCGTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	99099076	99103342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_99099954_99100405_99100844_99101853
49060	chr11	+	679	4	FSM	ENSMUSG00000020849.14	ENSMUST00000153038.8	738	4	-32	91	16	-91	multi-exon	FALSE	canonical	3	10099	junction_3	548.665249086869	1	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAGTGGACAAAATTTCT	3051	False	NA	NA	False	NA	NA	NA	75623754	75647851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642
49062	chrX	+	2548	10	Fusion	ENSMUSG00000087368.8_ENSMUSG00000031425.16	novel	2540	7	NA	NA	22934	-348	multi-exon	FALSE	canonical	0	0	junction_4	3.62433476228891	9	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAATATTATCTCAGCAT	NA	False	NA	NA	False	NA	NA	NA	135689289	135738199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_135689367_135721178_135721330_135723519_135723667_135723787_135723897_135731819_135732007_135732701_135732859_135734016_135734186_135734903_135734978_135735847_135735914_135736788
49063	chr2	+	1793	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	148	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1184.53918888317	1	100	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	130116559	130121227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117057_130117582_130117745_130117895_130118090_130118355_130118544_130118626_130118779_130118951_130119059_130119405_130119539_130119768_130119891_130120075_130120211_130120816
49064	chr18	-	3299	21	NNC	ENSMUSG00000024413.15	novel	5224	25	NA	NA	-14	-3595	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	14.8837999180317	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCGGCAAAGGGTAAGTGC	NA	False	NA	NA	False	NA	NA	NA	12369397	12329552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12329671_12330238_12330355_12331015_12331207_12331564_12331655_12332429_12332571_12332655_12332784_12333834_12333950_12334620_12334804_12335177_12335368_12337827_12337931_12341363_12341465_12343438_12343666_12344542_12344914_12345251_12345326_12346313_12346564_12347387_12347556_12352234_12352411_12354862_12354970_12356089_12356213_12365244_12365412_12369237
49066	chr18	+	3319	1	Genic_Genomic	ENSMUSG00000024563.17	novel	NA	NA	NA	NA	45937	784	mono-exon	FALSE	NA	NA	NA	NA	NA	40	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATGGGATCCAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	76441499	76444818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_76441500_76444800
49067	chr8	-	1628	10	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	-11	-199	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	339.977704425118	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGCTGGAAAACAGACCAA	NA	False	NA	NA	False	NA	NA	NA	31658741	31649689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_31650606_31650786_31650853_31651766_31651864_31653058_31653134_31654745_31654794_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
49068	chr11	-	1337	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-120	1	combination_of_known_junctions	FALSE	canonical	3	87	junction_7	41.9649999939211	477	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCATTGATTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	113600472	113588996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
49069	chr13	+	1659	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	-19	-585	-19	-4	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	326	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTCAGAAGCACTCTGGC	NA	False	NA	NA	False	NA	NA	NA	63387823	63450681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
49070	chr7	+	1938	10	NIC	ENSMUSG00000030796.18	novel	3396	11	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	111.113333311112	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGCCAAAAACCCA	6888	False	NA	NA	False	NA	NA	NA	44866634	44883052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44866875_44867504_44867570_44868567_44868631_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
49071	chr4	+	2485	18	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	66	-385	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	169.013727662602	1	115	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTAAGTAGAGACTATTTG	-30	True	NA	NA	False	NA	NA	NA	44300941	44364290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307105_44308905_44309050_44310289_44310345_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351101_44360864_44360976_44363709
49073	chr9	+	2161	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	-35	7	-35	-7	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	296	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATGTGACTGTGTCAGC	NA	False	NA	NA	False	NA	NA	NA	108167592	108173690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
49075	chr1	+	1335	2	Genic_Genomic	ENSMUSG00000101188.2	novel	1218	1	NA	NA	0	178	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGGCAAAAAGAAGGAACC	NA	False	NA	NA	False	NA	NA	NA	60743090	60744486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_60744088_60744148
49076	chr2	+	3077	7	FSM	ENSMUSG00000064289.16	ENSMUST00000112494.2	2698	7	10	-389	10	389	multi-exon	FALSE	canonical	3	34	junction_2	10.286182749473	13	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAATTTTATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	61423489	61482532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081
49078	chr3	-	1262	11	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	267.054020752356	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88857295	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
49080	chr3	+	2764	24	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	8144	30995	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	142	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCCAACTTTACCTCAGT	3670	False	NA	NA	False	NA	NA	NA	89916565	89959747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89916641_89917742_89917871_89922454_89922515_89922598_89922805_89924004_89924067_89924413_89924590_89925716_89925776_89926458_89926651_89928205_89928353_89928546_89928824_89930737_89930936_89932369_89932542_89933899_89933988_89935635_89935683_89938134_89938182_89938620_89938677_89941370_89941485_89941961_89942006_89945674_89945773_89946156_89946324_89951006_89951114_89952156_89952238_89955075_89955188_89959696
49082	chr9	-	1635	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	81	0	-56	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	411	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	NA	False	NA	NA	NA	56068260	56043167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
49084	chr5	+	2061	11	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5691	22708	-19	-6	internal_fragment	FALSE	canonical	3	147	junction_1	11.74265728019	243	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATATTTTGCCTTTTTTA	2461	False	NA	NA	False	NA	NA	NA	37248404	37282637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
49086	chr4	+	2837	13	NNC	ENSMUSG00000000085.17	novel	1995	13	NA	NA	-37	1	intron_retention	FALSE	canonical	0	0	junction_12	24.6317320183178	2	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGTGTCTTTTTAACCAGT	NA	False	NA	NA	False	NA	NA	NA	120319239	120387382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374264_120379651_120379847_120382194_120382261_120385352_120385500_120386444
49087	chr11	-	2890	2	NNC	ENSMUSG00000049892.8	novel	1611	2	NA	NA	1732	14938	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	376	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGGGCGCTGGGTGCTTGC	NA	False	NA	NA	False	NA	NA	NA	59854038	59839068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59839304_59851383
49088	chr6	-	1245	9	FSM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	49	59	33	-59	multi-exon	FALSE	canonical	3	942	junction_8	78.4968152220203	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATCTTTTGGTTAAAAG	2226	False	NA	NA	False	NA	NA	NA	113717655	113705081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
49089	chr6	+	1248	10	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1283.511223842	3	21	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	124689265	124693913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124689493_124689675_124689752_124690024_124690105_124690946_124691022_124691080_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692999_124693568
49090	chr19	-	2633	8	NNC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	209.585596950219	12	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATATGGCATTCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	4889303	4875404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4875693_4875797_4875902_4875971_4876377_4881553_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
49091	chr15	+	1812	1	Antisense	novelGene_ENSMUSG00000022304.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCATAGAGACACTAAAACT	NA	False	NA	NA	False	NA	NA	NA	39645464	39647276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_39645500_39647300
49092	chr8	+	1290	9	ISM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	88	0	88	0	intron_retention	FALSE	canonical	3	1246	junction_3	46.5025200930014	232	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	540	False	NA	NA	False	NA	NA	NA	70755255	70765640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355
49093	chr4	+	1925	6	NNC	ENSMUSG00000028480.15	novel	2320	5	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	122.835825393083	1	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	10	True	NA	NA	False	NA	NA	NA	43957716	43979118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_43957774_43968111_43968193_43968571_43968676_43970499_43970578_43977462_43978518_43978568
49094	chr8	+	2502	8	Antisense	novelGene_ENSMUSG00000037103.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGGGGCAGCTTCCGGAA	NA	False	NA	NA	False	NA	NA	NA	84824071	84829635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_84824482_84824564_84824672_84824828_84824912_84824988_84825119_84825206_84825825_84828304_84828475_84828559_84828701_84828792
49098	chr5	-	2186	12	ISM	ENSMUSG00000005299.7	ENSMUST00000005431.6	5272	14	13043	2644	680	217	3prime_fragment	FALSE	canonical	3	324	junction_8	48.0321861785502	150	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTTTTAATTTTCATCA	9209	False	NA	NA	False	NA	NA	NA	33927118	33899660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_33899957_33900985_33901125_33902359_33902548_33903583_33903719_33904719_33904855_33905504_33905646_33906085_33906218_33909835_33909956_33918066_33918271_33918923_33919062_33919802_33919947_33926704
49099	chrX	-	2173	17	NNC	ENSMUSG00000025266.12	novel	4869	16	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.432799209266	1	70	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTGAGACTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	149800291	149766136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149766391_149769059_149769183_149770834_149771058_149774131_149774260_149776644_149776782_149777006_149777150_149777243_149777419_149778006_149778095_149780181_149780327_149782692_149782800_149783598_149783735_149784033_149784118_149785169_149785287_149786529_149786638_149787240_149787282_149797016_149797086_149800196
49100	chr2	-	2221	1	Genic_Genomic	ENSMUSG00000026941.17	novel	NA	NA	NA	NA	-1030	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGTGTGGTGAGCTGG	8036	False	NA	NA	False	NA	NA	NA	25462400	25460179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_25460200_25462400
49101	chr11	+	627	1	NIC	ENSMUSG00000025372.17	novel	2394	14	NA	NA	8485	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	119896981	119897608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_119897000_119897600
49102	chr3	-	807	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	107	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3914.76974546397	4	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049902	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045418_86045789_86045900_86046346_86046531_86048578_86048734_86049004_86049109_86049814
49103	chr16	-	1019	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	-34	-207	-34	-1	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	4674	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTCGTTTATTTTAAT	NA	False	NA	NA	False	NA	NA	NA	18695323	18690768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
49104	chr8	+	2942	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	28	31	18	-31	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	1	124	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACATGGAATAAACATGTT	7228	False	NA	NA	False	NA	NA	NA	69661717	69683157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
49105	chr9	+	4106	20	NNC	ENSMUSG00000044037.16	novel	4122	19	NA	NA	90	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	10.3104175056723	39	62	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	7146	False	NA	NA	False	NA	NA	NA	110717152	110729597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110717177_110717547_110717607_110717753_110717821_110718172_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723390_110723461_110723630_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
49109	chr8	-	2506	8	NNC	ENSMUSG00000031951.9	novel	2920	8	NA	NA	23	-396	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	118.051873758781	3	108	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATTATGTGCCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	112660408	112639100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112640742_112641120_112641227_112641888_112641971_112643756_112643842_112644922_112645067_112645459_112645589_112659991_112660162_112660259
49110	chr7	+	1336	6	ISM	ENSMUSG00000003865.17	ENSMUST00000211150.2	2681	15	12996	78	142	-78	3prime_fragment	FALSE	canonical	3	219	junction_3	11.2605506082074	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCATGTTGGATTCTGTG	NA	False	NA	NA	False	NA	NA	NA	45097296	45105193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
49111	chr5	-	1752	8	FSM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	-55	0	-19	0	multi-exon	FALSE	canonical	3	81	junction_2	195.851880725393	597	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	NA	False	NA	NA	NA	41865519	41782318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
49112	chr13	+	1216	4	FSM	ENSMUSG00000021486.8	ENSMUST00000224220.2	1204	4	-9	-3	-9	0	multi-exon	FALSE	canonical	3	1299	junction_2	69.7726466620138	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	5544	False	NA	NA	False	NA	NA	NA	55469822	55473085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55470095_55470665_55470892_55472143_55472419_55472642
49113	chr13	+	3763	1	ISM	ENSMUSG00000054889.11	ENSMUST00000124830.3	9592	24	43506	15	16433	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	58	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGACCTTGGAAGTGCT	NA	False	NA	NA	False	NA	NA	NA	38378775	38382538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_38378800_38382500
49115	chr17	+	1613	7	NNC	ENSMUSG00000034681.18	novel	1769	8	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	568.161655399823	1	54	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGCTGGTTTTACTGT	916	False	NA	NA	False	NA	NA	NA	24633651	24644872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24633709_24637434_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
49116	chrX	+	1361	4	NIC	ENSMUSG00000015217.12	novel	1571	5	NA	NA	4	-31	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	393.253946790959	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAACTGTTCTGTATTAC	NA	False	NA	NA	False	NA	NA	NA	70599527	70604251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_70599615_70601658_70601814_70602038_70602179_70603272
49117	chr14	-	3991	4	FSM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	183	0	38	0	multi-exon	FALSE	canonical	3	26	junction_2	79.79974937304	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTGGGGTCTTTGTGG	725	False	NA	NA	False	NA	NA	NA	69522378	69479296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_69482804_69485029_69485087_69486842_69487072_69522180
49118	chr8	+	1761	12	Antisense	novelGene_ENSMUSG00000038215.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	258	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCTGGCATTCCTAGAT	NA	False	NA	NA	False	NA	NA	NA	56984556	57003904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_56984766_56985509_56985549_56985809_56985936_56991645_56991719_56992730_56992937_56993899_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003159_57003581
49119	chrY	+	2483	4	Intergenic	novelGene_4720	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	54	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGACAGAGAGAGACTTAG	NA	False	NA	NA	False	NA	NA	NA	90835875	90839961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_90836950_90837832_90838880_90839183_90839302_90839717
49121	chr1	-	1353	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	-62	7	-62	-6	multi-exon	FALSE	canonical	3	151	junction_2	7.5	656	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGCTAAGGATCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	170885685	170878749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_170879422_170881507_170881763_170885259
49122	chr1	+	1078	9	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	3576	junction_1	753.146068170046	931	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862736	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160865118_160865564_160865608_160865794_160865843_160866026
49125	chr11	+	1204	4	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	11	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5317.44299452284	3	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTAACACAGGTGTAACT	3046	False	NA	NA	False	NA	NA	NA	75623749	75656660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642922_75655630_75655985_75656193
49126	chr10	-	1191	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	14	1	14	-1	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	2753	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAATGTGTGAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	126866695	126858201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
49127	chr15	-	1887	9	NNC	ENSMUSG00000022442.17	novel	2060	12	NA	NA	6611	-2	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	20.8851023459307	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGACTTTATCTTATTA	5582	False	NA	NA	False	NA	NA	NA	83388383	83367971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83388068
49129	chr3	-	2282	2	NNC	ENSMUSG00000037531.9	novel	523	5	NA	NA	-1017	-3590	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	5	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTAGGCTTGTGGGCG	NA	False	NA	NA	False	NA	NA	NA	32787779	32785313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32786352_32786535
49130	chr19	+	2225	9	FSM	ENSMUSG00000025227.15	ENSMUST00000086969.13	2278	9	43	10	-12	-10	multi-exon	FALSE	canonical	3	169	junction_1	30.2561977122044	1	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCATTCCAATTCTTTGG	4241	False	NA	NA	False	NA	NA	NA	46345361	46363681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
49132	chr11	+	1958	10	ISM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	5377	924	56	-1	3prime_fragment	FALSE	canonical	3	74	junction_9	6.48835614251397	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAGAGTATTTACTGGG	NA	False	NA	NA	False	NA	NA	NA	116750022	116765537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
49133	chr2	+	2908	14	NNC	ENSMUSG00000058793.15	novel	8396	13	NA	NA	66	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	118.061161563922	8	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAACATATACTAAATTC	5403	False	NA	NA	False	NA	NA	NA	132105226	132153948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147337_132152643
49134	chr1	+	1991	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	6	1	-5	0	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097903	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
49135	chr1	+	4244	6	ISM	ENSMUSG00000025969.16	ENSMUST00000114155.8	6534	16	65294	5	65294	-5	3prime_fragment	FALSE	canonical	2	4	junction_5	6.67532770731145	11	84	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACATCTGGGTTTTTTT	9749	False	NA	NA	False	NA	NA	NA	62808154	62838468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62834867
49136	chrY	-	620	1	Intergenic	novelGene_4719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGGGGAAATCAACCAAGT	8349	False	NA	NA	False	NA	NA	NA	90820380	90819760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_-_90819800_90820400
49137	chr12	+	1449	11	NIC	ENSMUSG00000021235.14	novel	1776	13	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	88.1451076350809	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	84408799	84420566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_84409012_84413658_84413794_84415359_84415484_84417029_84417129_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
49138	chr4	-	1881	16	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	5451	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	108.441074628882	1	60	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTGTGGCAGTTACAAT	NA	False	NA	NA	False	NA	NA	NA	108959777	108919282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929222_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108959693
49139	chrX	+	1748	12	NIC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	-12	-2	intron_retention	FALSE	canonical	3	663	junction_3	72.658945175729	2604	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGGAGTGCCTGCATTA	187	False	NA	NA	False	NA	NA	NA	73356626	73363738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
49140	chr2	+	3061	16	Antisense	novelGene_ENSMUSG00000033526.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	63	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGAAGGAGGCCCAGTGA	65	False	NA	NA	False	NA	NA	NA	121141961	121172519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_121142966_121147135_121147252_121152137_121152273_121158124_121158255_121162042_121162126_121162718_121162864_121164885_121165059_121165202_121165317_121166875_121166984_121167205_121167320_121167561_121167691_121167928_121168152_121168301_121168449_121171233_121171412_121172090_121172217_121172383
49141	chr4	+	1251	4	NNC	ENSMUSG00000028797.21	novel	428	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	180.694954734953	1	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3194	False	NA	NA	False	NA	NA	NA	129494490	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129495037_129495987_129496055_129501432
49142	chr13	+	2008	12	NIC	ENSMUSG00000021694.19	novel	2095	12	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	36.2844592555969	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTGTTCTTTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	108295271	108331514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320356_108320457_108323730_108323815_108330589
49143	chr15	-	2304	12	NIC	ENSMUSG00000036606.18	novel	6497	38	NA	NA	64	1608	combination_of_known_splicesites	FALSE	canonical	3	14	junction_11	79.0020399360016	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGGTACCACTGCTTGTC	9207	False	NA	NA	False	NA	NA	NA	89064927	89047485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89064867
49144	chr15	-	1698	10	NIC	ENSMUSG00000023021.16	novel	2096	10	NA	NA	49	-119	intron_retention	FALSE	canonical	3	38	junction_2	75.4335616434901	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGAGGGGGAGGGTAGGA	NA	False	NA	NA	False	NA	NA	NA	99670294	99633591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99634318_99636545_99636612_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
49145	chr2	+	2147	13	NNC	ENSMUSG00000003283.16	novel	2090	13	NA	NA	-800	-10	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5877188310572	81	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTTCCCCAAGGGTCAGC	NA	False	NA	NA	False	NA	NA	NA	152949587	152993349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152949942_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
49146	chr9	-	2171	12	NNC	ENSMUSG00000032298.14	novel	1693	10	NA	NA	-787	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	20.0787705000428	167	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGGTACTTCTTGGGC	NA	False	NA	NA	False	NA	NA	NA	57056376	57050081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57050611_57050734_57050898_57051041_57051104_57051262_57051291_57051470_57051599_57051921_57052022_57052228_57052293_57052381_57052502_57053884_57054342_57055367_57055646_57055992_57056087_57056228
49147	chr7	-	1360	7	FSM	ENSMUSG00000025486.18	ENSMUST00000026559.14	1461	7	98	3	78	-3	multi-exon	FALSE	canonical	3	24	junction_6	79.4187215543875	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGGCATCCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	140462124	140443585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140462070
49148	chr9	+	958	8	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	68	2170	-13	-1659	5prime_fragment	FALSE	canonical	3	5755	junction_3	188.439997487426	1	17	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTGCACTTACGGTGGT	NA	False	NA	NA	False	NA	NA	NA	108765768	108776521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403
49149	chr7	-	2665	13	FSM	ENSMUSG00000044702.14	ENSMUST00000106469.8	2559	13	-106	0	-4	0	multi-exon	FALSE	canonical	3	13	junction_9	41.4242950721219	21	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	NA	False	NA	NA	NA	121732173	121706484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121727360_121727667_121728145_121728240_121728896_121728957_121731942
49150	chr16	-	4756	9	ISM	ENSMUSG00000040820.17	ENSMUST00000099512.3	4833	10	19281	-111	19281	111	3prime_fragment	FALSE	canonical	3	36	junction_1	5.36044541059789	27	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCAGTCCATTCTTGCTT	NA	False	NA	NA	False	NA	NA	NA	94069434	93930053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_93932825_93933859_93934074_93935507_93935623_93939667_93939829_93942207_93942276_94031922_94032195_94063450_94063634_94068234_94069167_94069394
49151	chr10	-	1368	7	NIC	ENSMUSG00000000902.14	novel	1660	9	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_6	367.805844011333	80	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGTGCAGTAGCATAAA	6880	False	NA	NA	False	NA	NA	NA	75757432	75732606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75757136
49153	chr19	-	1322	4	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138243	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	88.3377357393518	370	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCACTTGTGTGTCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	21768583	21574679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_21575699_21576118_21576233_21581652_21581683_21768424
49154	chr2	-	2180	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	9	-6	combination_of_known_splicesites	FALSE	canonical	3	58	junction_5	166.375148384607	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAGGGAAAGGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	152174295	152158259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
49156	chr7	-	2114	5	NNC	ENSMUSG00000070436.13	novel	2215	5	NA	NA	14	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	675.22787820113	1	97	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTCCCATATCATTCTT	NA	False	NA	NA	False	NA	NA	NA	99002432	98994607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995630_98996131_98996365_98996472_98996519_98998031_98998672_99002259
49157	chr17	-	1966	8	NNC	ENSMUSG00000036820.13	novel	1530	10	NA	NA	-10	0	intron_retention	TRUE	non_canonical	0	0	junction_1	115.069810221838	2	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	24382648	24374806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24375411_24376401_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
49158	chr6	+	2108	11	NNC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	39	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	151.702208289794	1	77	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATTAGTGTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	72575584	72584464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579992_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
49159	chr15	-	1447	13	NNC	ENSMUSG00000036678.9	novel	1814	15	NA	NA	-4	0	intron_retention	FALSE	non_canonical	0	0	junction_1	184.901832062314	10	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	NA	False	NA	NA	NA	102259134	102246690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102246941_102247080_102247161_102247251_102247292_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
49160	chr5	+	4062	15	FSM	ENSMUSG00000011034.7	ENSMUST00000011178.5	4104	15	-129	171	-129	-171	multi-exon	TRUE	canonical	0	0	junction_1	3.0572763655761	17	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTTTCCCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	33261433	33320043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_33261936_33274126_33274199_33289293_33289399_33290729_33290790_33291946_33292052_33301306_33301413_33302593_33302675_33303850_33304072_33304286_33304423_33306240_33306349_33309902_33310054_33311889_33312059_33315431_33315648_33316420_33316530_33318122
49161	chr17	-	2889	8	NIC	ENSMUSG00000025728.17	novel	3173	11	NA	NA	0	53	intron_retention	FALSE	canonical	3	243	junction_4	22.8714241099309	1	117	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCTGACCCTTTAATAC	NA	False	NA	NA	False	NA	NA	NA	26160857	26146358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26146731_26147764_26147827_26149494_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
49162	chr6	-	1081	6	ISM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	7838	5251	-3	224	3prime_fragment	FALSE	canonical	3	251	junction_4	11.7405280971513	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAATTTAGAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	85930811	85924500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352
49163	chr3	-	2185	5	Antisense	novelGene_ENSMUSG00000052310.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	19	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCGCGTCGGGAATTCC	NA	False	NA	NA	False	NA	NA	NA	90160919	90155528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_90155565_90156250_90156469_90156630_90156762_90158990_90160147_90160275
49164	chr2	-	1865	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	437.996448488899	1	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	152185980	152179341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180608_152181634_152181928_152185145_152185248_152185776
49165	chr12	+	2055	15	NIC	ENSMUSG00000021177.17	novel	3945	14	NA	NA	1	6	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	193.134985046676	211	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGAGACCTTTAAGAGGG	NA	False	NA	NA	False	NA	NA	NA	99850793	99885569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_99850812_99852736_99852980_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99885326
49166	chr17	-	1956	8	NNC	ENSMUSG00000023909.5	novel	2575	3	NA	NA	3663	9761	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	248	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGAGGCCCCGCCCAGGCTC	NA	False	NA	NA	False	NA	NA	NA	23955709	23945398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_23945613_23951307_23951792_23952789_23953289_23953937_23954044_23954170_23954345_23954534_23954694_23955296_23955372_23955464
49167	chr4	+	2249	2	NNC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	6530	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	42	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGCTGGGTGTCATGGC	3030	False	NA	NA	False	NA	NA	NA	152099789	152102133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152101437_152101531
49168	chr13	+	2309	14	Intergenic	novelGene_1472	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	124	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCACTGCAGGGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	74470798	74493051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_74471301_74471967_74472072_74475043_74475176_74475365_74475478_74476415_74476534_74479416_74479606_74480234_74480414_74481138_74481312_74482426_74482543_74485516_74485661_74487166_74487333_74487701_74487835_74491458_74491618_74492969
49169	chr6	+	1088	8	NIC	ENSMUSG00000052738.15	novel	1519	9	NA	NA	18	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	529.782281042054	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAACTTGGCTGTGAAGA	2619	False	NA	NA	False	NA	NA	NA	73225668	73253884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_73225737_73233153_73233258_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
49170	chr11	-	3650	1	ISM	ENSMUSG00000020902.13	ENSMUST00000021284.4	5738	7	173791	22	173791	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	83	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTGTATACTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	68103861	68100211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_68100200_68103900
49171	chr5	-	2441	12	FSM	ENSMUSG00000042726.15	ENSMUST00000042312.14	2503	12	57	5	2	0	multi-exon	FALSE	canonical	3	16	junction_2	8.79894809640935	67	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCTTGTGATTCTTTC	3626	False	NA	NA	False	NA	NA	NA	121523638	121509792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121510476_121510665_121510739_121511200_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
49172	chr10	+	2237	10	FSM	ENSMUSG00000020218.12	ENSMUST00000020439.11	2294	10	44	13	-20	0	multi-exon	FALSE	canonical	3	14	junction_1	5.2704627669473	72	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGAGTACTGTATGGG	NA	False	NA	NA	False	NA	NA	NA	120869908	120936542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_120870396_120870870_120871011_120911150_120911260_120918030_120918172_120919792_120919889_120920813_120920910_120926015_120926112_120931903_120932000_120932545_120932642_120935662
49173	chr3	+	1458	2	ISM	ENSMUSG00000027852.15	ENSMUST00000200457.5	663	5	-2	2267	-2	-45	intron_retention	FALSE	canonical	3	811	junction_1	0	4	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAGAGGAGTACAGTGCC	NA	False	NA	NA	False	NA	NA	NA	102965661	102967583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_102965757_102966220
49174	chr13	+	3098	16	Antisense	novelGene_ENSMUSG00000116207.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	167	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGCTCCCAACGTTTC	5681	False	NA	NA	False	NA	NA	NA	119472076	119541242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_119472941_119474909_119475024_119476356_119476488_119491201_119491279_119494044_119494199_119502866_119503035_119505007_119505169_119506444_119506675_119508936_119509128_119511164_119511207_119518206_119518408_119523121_119523211_119525737_119525819_119531150_119531362_119533281_119533505_119541081
49175	chr7	+	1429	10	NNC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	-5	389	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	393.470315130492	22	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGAGCTGTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	15832527	15851053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15848056_15848151_15849127_15849197_15849524_15849576_15850388
49176	chr6	+	2051	8	NIC	ENSMUSG00000013736.17	novel	1614	9	NA	NA	-4	289	intron_retention	FALSE	canonical	1	13	junction_1	312.701983703725	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAGCTTCACAGCATCAG	NA	False	NA	NA	False	NA	NA	NA	106746097	106759121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_106746153_106746816_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756429_106758607
49177	chrX	-	2642	9	NNC	ENSMUSG00000034457.11	novel	4752	8	NA	NA	8	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	46.1883034436209	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGTTTATTCCTCGGC	NA	False	NA	NA	False	NA	NA	NA	96420770	96377442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_96377863_96379923_96381057_96382408_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
49178	chr9	+	2418	12	NNC	ENSMUSG00000032435.10	novel	2601	13	NA	NA	55	13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	130.61912330092	7	66	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTTGCCTTTTCTTA	2181	False	NA	NA	False	NA	NA	NA	114517912	114553383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544672_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
49179	chr19	+	2105	14	NNC	ENSMUSG00000025217.16	novel	2064	14	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	201.707503974848	1	68	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCAGAATCTCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	45352171	45517727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_45352326_45444971_45445050_45459453_45459544_45491370_45491553_45496130_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
49180	chr9	-	1882	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086459.6	2086	3	207	-3	207	0	multi-exon	TRUE	canonical	3	69	junction_2	12	330	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTTGCACTTATTTAAC	NA	False	NA	NA	False	NA	NA	NA	20553895	20549081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20550495_20553319_20553393_20553499
49181	chr1	-	885	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	266	12	6	-1	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	18	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAATTGAAATGTGTCGG	NA	False	NA	NA	False	NA	NA	NA	16174620	16171530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
49182	chr8	-	2722	7	NNC	ENSMUSG00000050751.15	novel	2824	7	NA	NA	18839	-1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	33.3066559914581	85	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTTAGTATGTGATTTT	NA	False	NA	NA	False	NA	NA	NA	125141836	125095788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125106922_125107058_125110933_125111362_125141799
49183	chr5	-	1260	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	7	1571	7	-45	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACATTCTGAATGCTTC	6771	False	NA	NA	False	NA	NA	NA	148989843	148985082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
49184	chr6	-	1144	9	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1930.50511120147	2	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437493_125437545_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
49185	chr7	-	1237	10	NNC	ENSMUSG00000030697.8	novel	1359	9	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	825.497395887645	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5128	False	NA	NA	False	NA	NA	NA	126391610	126385037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126385261_126385324_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
49186	chr17	+	1440	6	ISM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	370	8008	88	517	5prime_fragment	FALSE	canonical	3	226	junction_1	4.79165942028438	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTTGATCATATTCCT	NA	False	NA	NA	False	NA	NA	NA	79359704	79389799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175
49187	chr10	-	3401	13	FSM	ENSMUSG00000015202.14	ENSMUST00000015346.12	3447	13	42	4	42	-4	multi-exon	FALSE	canonical	3	41	junction_10	5.32812245438193	60	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCATTTGGGATTTTATG	NA	False	NA	NA	False	NA	NA	NA	7162195	7069066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_7070587_7076094_7076185_7076634_7076844_7079022_7079148_7084521_7084669_7085047_7085117_7088354_7088415_7090318_7090439_7092960_7093003_7102863_7102952_7104282_7104486_7110643_7110808_7161631
49189	chr15	-	2077	11	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	185	-3	intron_retention	FALSE	canonical	3	23	junction_10	104.801192741304	394	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGCAGTGTTTGATTTC	9601	False	NA	NA	False	NA	NA	NA	98729150	98710680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98728767
49190	chr12	+	1791	8	Antisense	novelGene_ENSMUSG00000020650.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	625	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCGGGAGCGCGCCGGG	NA	False	NA	NA	False	NA	NA	NA	31645352	31684657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_31646379_31650644_31650744_31667073_31667179_31674112_31674250_31676724_31676878_31680793_31680895_31684263_31684378_31684601
49191	chr6	+	840	1	Intergenic	novelGene_4164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTCTCGAAAAACCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	47795302	47796142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_47795300_47796100
49192	chr6	+	2789	4	Antisense	novelGene_ENSMUSG00000051499.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCGCCGCTCCCACTCGC	NA	False	NA	NA	False	NA	NA	NA	47796238	47807438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_47798634_47801972_47802133_47803897_47804028_47807334
49193	chr6	-	2616	6	NNC	ENSMUSG00000039159.17	novel	4657	7	NA	NA	-28666	-1679	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	129.181422813035	84	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGCTTTTGATATTGAT	NA	False	NA	NA	False	NA	NA	NA	30272468	30212966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30272265
49194	chr10	-	2195	10	FSM	ENSMUSG00000019917.11	ENSMUST00000165971.3	2532	10	351	-14	351	14	multi-exon	FALSE	canonical	3	22	junction_1	10.8639169436269	112	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAAATGTGTTGAAATT	NA	False	NA	NA	False	NA	NA	NA	59057318	58999927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_59000767_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
49195	chrX	-	2272	7	NNC	ENSMUSG00000031352.11	novel	2473	7	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	214.282329338344	165	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTTAGAGTGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	168103342	168094526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168103223
49196	chr6	+	1051	7	Intergenic	novelGene_4244	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGTGTGGCCAGTGCCG	-2	True	NA	NA	False	NA	NA	NA	124935380	124941755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_124935735_124936760_124936912_124937051_124937162_124938121_124938324_124939320_124939410_124939584_124939661_124941686
49197	chr11	-	1307	5	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	472.330922129814	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6435	False	NA	NA	False	NA	NA	NA	102076043	102053322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102053932_102054603_102054994_102056185_102056313_102057912_102057945_102075894
49198	chr19	-	3185	13	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	266	-1	266	1	3prime_fragment	TRUE	canonical	3	295	junction_2	36.707931325835	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCAGAGTCTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	38212320	38176927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284
49199	chr17	+	2464	8	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	-51	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	226.140104666942	1	130	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTTTCCTTTACTTTG	5674	False	NA	NA	False	NA	NA	NA	34128523	34134561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34128564_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
49201	chr6	-	1826	10	NNC	ENSMUSG00000035378.18	novel	1990	11	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	88.5388942921083	1	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGGTGTAAATAATTAGAA	NA	False	NA	NA	False	NA	NA	NA	100648100	100550041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641525_100646660_100646726_100647879
49202	chr6	+	2446	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	10	3	10	-3	multi-exon	FALSE	canonical	3	65	junction_1	9.07683253612673	143	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTGATTGTCATGTTT	NA	False	NA	NA	False	NA	NA	NA	147377378	147534107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
49203	chr9	+	1463	15	NNC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	-10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	354.48606806048	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGTTCTCCCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	106354506	106362614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_106354634_106354869_106354920_106357936_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
49204	chr1	+	1204	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-3	15	-3	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	3	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454444	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
49205	chr8	-	3253	13	ISM	ENSMUSG00000045636.17	ENSMUST00000118835.8	6426	14	31227	1645	-664	-1511	3prime_fragment	FALSE	canonical	3	91	junction_10	15.6436000403431	1	62	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTTTCTGGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	41536477	41445599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650
49206	chr6	-	2789	1	NIC	ENSMUSG00000029826.15	novel	3400	9	NA	NA	1	-36146	mono-exon	FALSE	NA	NA	NA	NA	NA	17	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCCAGTGTTTTATGTTA	9665	False	NA	NA	False	NA	NA	NA	38331537	38328748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_38328700_38331500
49207	chr9	+	1708	8	ISM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	164	10	-13	-2	intron_retention	FALSE	canonical	3	832	junction_5	84.6638009049527	18	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTGAAAATGAGCTGGTC	NA	False	NA	NA	False	NA	NA	NA	20914197	20920125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118
49208	chr12	+	2852	9	NNC	ENSMUSG00000021113.6	novel	6275	10	NA	NA	16	279	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_8	27.4018133524043	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATCTTCTAGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	74011270	74031160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029406
49209	chr11	+	1566	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	115	103	-44	-103	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGGCACATTTTAAATG	9356	False	NA	NA	False	NA	NA	NA	62770395	62785908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
49210	chr17	+	971	3	NNC	ENSMUSG00000071172.14	novel	893	3	NA	NA	-137	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1011	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTGGTTACAAATTGT	NA	False	NA	NA	False	NA	NA	NA	29255215	29261055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29255423_29257463_29257526_29260353
49211	chr16	+	1685	13	NNC	ENSMUSG00000014232.15	novel	1779	12	NA	NA	-48	277	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	43.5178762757968	673	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTATGACTCTTTTGTTT	3260	False	NA	NA	False	NA	NA	NA	3726854	3759288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631_3759022_3759226
49212	chr9	+	2160	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	182	3447	1	1982	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	1	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTTGTTTCTGTCAT	8547	False	NA	NA	False	NA	NA	NA	18203602	18225291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
49213	chr16	-	2108	6	NIC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	19	-7	intron_retention	FALSE	canonical	0	0	junction_5	186.10577637462	1	93	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGATTATGTGCGCATG	NA	False	NA	NA	False	NA	NA	NA	5073774	5062022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_5063250_5065316_5065464_5066428_5066910_5067210_5067313_5068338_5068420_5073704
49214	chr4	-	2325	2	NIC	ENSMUSG00000029073.10	novel	2662	3	NA	NA	0	9	intron_retention	FALSE	canonical	3	81	junction_1	0	161	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACATGATTGGGTATAGCA	NA	False	NA	NA	False	NA	NA	NA	155953897	155949743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155951795_155953623
49216	chr10	+	3052	9	NNC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	0	-956	intron_retention	FALSE	canonical	3	144	junction_4	517.872028111193	1	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTTGCTGGCTTTTTT	2286	False	NA	NA	False	NA	NA	NA	79795985	79805081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801790_79801958_79802039_79802304_79802393_79802561_79803153_79803223_79803304
49217	chr5	+	1645	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	101	12	-5	-12	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	304	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGTTAGTACTTGACAG	8770	False	NA	NA	False	NA	NA	NA	135197237	135210697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
49218	chr6	+	3268	2	FSM	ENSMUSG00000041477.15	ENSMUST00000127059.2	2048	2	-2630	1410	-2630	-2	multi-exon	FALSE	canonical	3	71	junction_1	0	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATGTCTGGGGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	119191874	119197165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_119194941_119196963
49219	chr8	+	2923	4	FSM	ENSMUSG00000046152.17	ENSMUST00000161788.8	2962	4	39	0	24	0	multi-exon	FALSE	canonical	3	13	junction_3	13.29995822884	56	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTGTCGCAGACTCTC	NA	False	NA	NA	False	NA	NA	NA	31677398	31727822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622
49220	chr4	-	1586	9	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	117556	2625	-1413	2076	3prime_fragment	FALSE	canonical	3	26	junction_2	6.66966078597705	4	16	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAACACTTTTGTGAAAA	953	False	NA	NA	False	NA	NA	NA	53042339	53033411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_53034084_53035336_53035581_53036261_53036355_53036872_53036977_53038156_53038292_53038618_53038761_53040718_53040826_53041538_53041602_53042313
49221	chr4	-	2625	1	ISM	ENSMUSG00000015243.5	ENSMUST00000030010.4	10262	50	126484	0	7515	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAAGTTCCTTTTGTGCA	9881	False	NA	NA	False	NA	NA	NA	53033411	53030786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_53030800_53033400
49222	chr14	-	866	2	FSM	ENSMUSG00000021772.16	ENSMUST00000145355.2	338	2	-75	-453	-23	208	multi-exon	FALSE	canonical	3	6	junction_1	0	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCAAATACAGAGCTGAGC	NA	False	NA	NA	False	NA	NA	NA	4198533	4192165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_4192871_4198372
49223	chr19	+	1382	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	-122	1296	-122	-1296	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGGGTGATGACTTACA	1670	False	NA	NA	False	NA	NA	NA	5416646	5420258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
49225	chr2	-	2193	14	NNC	ENSMUSG00000006471.19	novel	2336	14	NA	NA	-3	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	77.0416009959792	1	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTTATAGTCCCTACC	NA	False	NA	NA	False	NA	NA	NA	25145383	25137459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138495_25138643_25138759_25138866_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145161
49226	chr18	-	3083	19	Antisense	novelGene_ENSMUSG00000041238.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	85	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACGCTTCTAACACTGCGA	NA	False	NA	NA	False	NA	NA	NA	11876050	11790911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_11791031_11793791_11794004_11805639_11805682_11810651_11810746_11826066_11826182_11829799_11829867_11838849_11838924_11848789_11848896_11851889_11851988_11853601_11853713_11854694_11855581_11855658_11855783_11858458_11858551_11860227_11860342_11865246_11865387_11867530_11867601_11871627_11871727_11873982_11874123_11875670
49227	chr9	-	1830	10	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	5203	-225	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	87.2579544642433	16	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTTTCAAAACGTATTT	NA	False	NA	NA	False	NA	NA	NA	27032643	27008904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27011611_27011764_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27032579
49230	chr5	+	1800	13	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	406	-294	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1243.66785881744	1	84	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCCTTGTTCCGTAAGTG	NA	False	NA	NA	False	NA	NA	NA	129864467	129874918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872326_129874418_129874497_129874588
49231	chr14	+	1147	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6644	False	NA	NA	False	NA	NA	NA	76742022	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744367_76744874
49232	chr5	+	4266	22	NNC	ENSMUSG00000061288.14	novel	4302	21	NA	NA	174	24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.91916802361792	19	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTCCGCTCCTTTTGCA	1560	False	NA	NA	False	NA	NA	NA	117258367	117413164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_117258405_117271749_117271841_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
49234	chr7	-	1960	8	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	37	junction_3	33.0787557449287	196	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCAGTGAGGTCAATTT	NA	False	NA	NA	False	NA	NA	NA	105289560	105284828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105285601_105286017_105286193_105286327_105286486_105286858_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
49235	chr15	-	1761	12	NNC	ENSMUSG00000016664.17	novel	3103	11	NA	NA	-26	-8	intron_retention	FALSE	canonical	3	25	junction_1	229.925320251081	5	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTCCTGCAGTGTCACT	NA	False	NA	NA	False	NA	NA	NA	83317051	83259815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83260018_83261892_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316952
49236	chr8	-	646	4	ISM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	24374	21759	24374	-21759	internal_fragment	FALSE	canonical	3	33	junction_1	2.44948974278318	1	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATTGCTGCAAAACTCAA	NA	False	NA	NA	False	NA	NA	NA	127177430	127173826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_127173968_127174059_127174322_127174951_127175167_127177402
49238	chr2	-	2648	18	NNC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	-25	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	112.240165142788	1	132	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTCTGAGTGCCCAGTA	NA	False	NA	NA	False	NA	NA	NA	126975847	126945750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966748_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
49239	chr9	-	1636	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239219.2	1636	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	677	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	88404941	88403104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403502_88403702
49240	chr5	+	3540	15	NNC	ENSMUSG00000029098.18	novel	3976	19	NA	NA	-10	-1251	intron_retention	FALSE	non_canonical	0	0	junction_12	25.848952925543	7	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGGCAGCCTACCGCTG	NA	False	NA	NA	False	NA	NA	NA	35740411	35764427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35740479_35741219_35741320_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35752915_35752979_35755658_35755756_35757035_35757219_35758846_35758973_35760268_35760386_35761957_35762081_35762550
49241	chr15	+	2947	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	0	-2389	0	0	multi-exon	FALSE	canonical	3	313	junction_1	272.243457221657	235	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGCTCTCATTGATTT	9616	False	NA	NA	False	NA	NA	NA	44291487	44301652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
49242	chr15	-	3894	22	NNC	ENSMUSG00000047921.18	novel	4048	22	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.9692446667405	6	81	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTTGATTTCAGACT	NA	False	NA	NA	False	NA	NA	NA	72932892	72461468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_72462012_72462464_72462689_72557131_72557218_72565340_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72922443_72922573_72924010_72924157_72929770_72930364_72932809
49243	chr4	+	2733	1	NIC	ENSMUSG00000028514.16	novel	10594	68	NA	NA	10039	-53	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTCATGTGTGGTGGAGT	NA	False	NA	NA	False	NA	NA	NA	106295728	106298461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_106295700_106298500
49244	chr19	-	2702	18	FSM	ENSMUSG00000024969.16	ENSMUST00000165965.8	2874	18	188	-16	-24	-10	multi-exon	FALSE	canonical	0	0	junction_3	87.3120720397554	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATCCCAGCGGC	4475	False	NA	NA	False	NA	NA	NA	7318610	7254107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318532
49245	chr19	-	1679	4	NIC	ENSMUSG00000057506.6	novel	885	5	NA	NA	6	-2	intron_retention	FALSE	canonical	3	1199	junction_3	40.0860186210715	59	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTGGGTTTTTTGGTTTT	972	False	NA	NA	False	NA	NA	NA	44134876	44127686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44128153_44130562_44131580_44134379_44134497_44134797
49246	chr16	+	2458	14	ISM	ENSMUSG00000068663.15	ENSMUST00000115823.2	2643	15	10472	-2	194	2	3prime_fragment	FALSE	canonical	0	0	junction_13	5.78510636214251	1	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCGGAGTCTCATTAGAA	NA	False	NA	NA	False	NA	NA	NA	10428886	10560331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_10429000_10432363_10432465_10445242_10445366_10447908_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249_10509455_10512483_10512655_10549524_10549684_10556255_10556380_10559477
49247	chr5	+	1369	7	NNC	ENSMUSG00000025532.14	novel	1492	6	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	133.949824768663	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCATGTGCCACCATAC	NA	False	NA	NA	False	NA	NA	NA	130058175	130089626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545_130088850_130088923
49248	chr17	+	1984	1	Intergenic	novelGene_317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCCCTCAGCCCTCAGC	NA	False	NA	NA	False	NA	NA	NA	88377500	88379484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_88377500_88379500
49249	chr16	-	2578	17	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	9	-1	intron_retention	FALSE	canonical	2	6	junction_12	28.7336230529671	1	58	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGGTGGGGGCTCATTTG	8213	False	NA	NA	False	NA	NA	NA	4782047	4759300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4774413_4774484_4775504_4775627_4775831_4776031_4778260_4778433_4781983
49251	chrX	+	4906	14	FSM	ENSMUSG00000031216.14	ENSMUST00000036606.14	4963	14	57	0	57	0	multi-exon	TRUE	canonical	3	27	junction_1	6.60016137511158	57	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGCTCTGGAGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	98086243	98118334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_98086401_98104333_98104406_98106970_98107053_98107999_98108064_98109163_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
49253	chr2	-	1359	11	NNC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	0	110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	148.021653821324	8	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGTCCATAAAATGAT	NA	False	NA	NA	False	NA	NA	NA	48839246	48795217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817195_48826793_48826875_48827463_48827541_48830344_48830413_48839128
49254	chr14	-	329	2	NNC	ENSMUSG00000006289.15	novel	2004	12	NA	NA	13	-4116	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAGAATGGACCAATCAG	NA	False	NA	NA	False	NA	NA	NA	51162316	51158666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51158800_51162120
49255	chr12	-	1605	7	FSM	ENSMUSG00000066441.15	ENSMUST00000085254.7	1673	7	62	6	62	-6	multi-exon	FALSE	canonical	0	0	junction_6	44.1263967358416	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTCTCCCGCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	79237673	79222330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79237542
49256	chr2	-	3821	21	NIC	ENSMUSG00000039834.18	novel	4587	28	NA	NA	8	-1613	intron_retention	FALSE	canonical	3	65	junction_6	15.5341559152726	14	102	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACACTGGCCACACTACA	NA	False	NA	NA	False	NA	NA	NA	164753669	164735414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749495_164749572_164749879_164750074_164750153_164751125_164751364_164752541_164752793_164753436
49257	chr2	+	2371	8	ISM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	87	10	19	-10	intron_retention	FALSE	canonical	3	164	junction_1	36.6015500954229	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAACAGCACATGCCATCT	NA	False	NA	NA	False	NA	NA	NA	25390848	25395473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428
49258	chr17	+	1972	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13547	-844	3758	3	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	93	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTACTGGCATGGGGCCA	NA	False	NA	NA	False	NA	NA	NA	32700982	32712297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
49259	chr7	-	3255	8	FSM	ENSMUSG00000030881.16	ENSMUST00000131446.8	3275	8	12	8	12	-4	multi-exon	FALSE	canonical	3	112	junction_3	9.16515138991168	220	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGTACAGTTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	105289611	105283417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
49260	chr2	+	1819	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	33.0924368247489	243	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	NA	False	NA	NA	NA	24852443	24862175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_24852823_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
49261	chr18	-	1360	9	ISM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	8319	705	2086	148	3prime_fragment	FALSE	canonical	3	5978	junction_5	294.169593941998	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTTCTGTCACTAGCC	8518	False	NA	NA	False	NA	NA	NA	35079091	35071171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996
49262	chr3	-	2141	20	NNC	ENSMUSG00000014601.14	novel	3215	21	NA	NA	0	-2170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.8165171848223	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGACCAAGTATTTGGGGC	NA	False	NA	NA	False	NA	NA	NA	107539010	107522020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_107522087_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
49264	chr6	+	1792	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	10	18	10	-18	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	664	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTACCTGGACTCAGAATT	NA	False	NA	NA	False	NA	NA	NA	129510132	129519291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
49265	chr10	-	3431	24	Antisense	novelGene_ENSMUSG00000111036.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	61	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGAGGCGCCACCGCACCC	NA	False	NA	NA	False	NA	NA	NA	45588361	45454462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_45454507_45464471_45464529_45465574_45465667_45466363_45466468_45481603_45481681_45494593_45494725_45514415_45514498_45524684_45524782_45524947_45525051_45525975_45526082_45528681_45528833_45546439_45546776_45547226_45547294_45547531_45547621_45548421_45548534_45548632_45548732_45548868_45548957_45552475_45552626_45553161_45553360_45562697_45562829_45576671_45576770_45577047_45577119_45585974_45586090_45587528
49266	chr18	+	4548	4	FSM	ENSMUSG00000024234.8	ENSMUST00000235025.2	922	4	13	-3639	12	3639	multi-exon	FALSE	canonical	3	50	junction_3	82.9471049658891	12	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAAGTCCATAGCAGGTA	12	True	NA	NA	False	NA	NA	NA	4375615	4387162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184
49267	chrX	+	2877	11	Antisense	novelGene_ENSMUSG00000082317.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACAAAAGGCCGATTAAAG	NA	False	NA	NA	False	NA	NA	NA	95349784	95411635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_95351421_95356635_95356733_95358395_95358613_95363891_95364023_95364209_95364290_95365600_95365661_95365893_95365973_95373115_95373243_95382020_95382154_95400741_95400853_95411429
49268	chr17	+	2560	14	FSM	ENSMUSG00000061126.6	ENSMUST00000237491.2	2618	14	6	52	6	-6	multi-exon	FALSE	canonical	3	12	junction_1	21.761482720107	71	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGGACAATTTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	32671702	32712242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_32671771_32684452_32684556_32687434_32687658_32689777_32689923_32700047_32700102_32700753_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
49271	chr14	-	1287	9	NNC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1427.47869949082	1	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCAACTGTCTCCAAA	8751	False	NA	NA	False	NA	NA	NA	52341459	52312260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312787_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
49272	chr11	-	2579	19	NNC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.994201562785	1	133	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3595	False	NA	NA	False	NA	NA	NA	54846935	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802109_54802261_54802324_54806322_54806446_54807669_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827352_54828753_54828892_54830423_54830562_54831536_54831709_54846846
49273	chr18	-	2895	19	NNC	ENSMUSG00000003778.15	novel	3005	21	NA	NA	1014	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	191.194200283958	1	137	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAGGAAAACTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	34756592	34732890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34733295_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738732_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507
49276	chr11	-	1943	5	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	-13	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	419.463049624159	2	79	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAAATTTTTTTAACCAT	6410	False	NA	NA	False	NA	NA	NA	102076068	102053344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054757_102056185_102056313_102057912_102058023_102073683_102073818_102075908
49277	chr5	-	97	1	Intergenic	novelGene_898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTCATTTAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	146197885	146197788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_146197800_146197900
49278	chr16	+	2323	10	NNC	ENSMUSG00000022678.17	novel	2287	9	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	119.869373347268	388	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAAAGTGTTTTGTGCA	NA	False	NA	NA	False	NA	NA	NA	13981209	14010784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_13995201_13995317_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
49280	chr9	-	591	1	Antisense	novelGene_ENSMUSG00000062933.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1207	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGAAAGTTTTCTGCTGTC	9521	False	NA	NA	False	NA	NA	NA	96778413	96777822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_96777800_96778400
49281	chr10	-	3730	6	ISM	ENSMUSG00000019790.18	ENSMUST00000136259.8	3791	7	9632	-2240	-175	1617	3prime_fragment	FALSE	canonical	3	16	junction_5	6.33719180710194	22	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGTCCCTGTTTGCTTAG	3285	False	NA	NA	False	NA	NA	NA	9646440	9634084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_9636699_9638488_9638710_9642901_9643014_9644573_9644740_9645084_9645455_9646193
49282	chr14	-	2381	5	NNC	ENSMUSG00000022008.5	novel	5389	8	NA	NA	8257	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.3018324314328	2	74	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTCTATATCTGAGAAGT	NA	False	NA	NA	False	NA	NA	NA	76339943	76323689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76325666_76332495_76332546_76335893_76336059_76336499_76336632_76339885
49283	chr1	-	1996	14	NNC	ENSMUSG00000026683.15	novel	2405	14	NA	NA	-13	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	54.3592041601335	2	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTACTACTGTTATCCA	NA	False	NA	NA	False	NA	NA	NA	169359046	169325886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344220_169349969_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
49285	chr9	+	1282	2	Genic_Genomic	ENSMUSG00000032398.8	novel	1228	3	NA	NA	2059	-478	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2257	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATTTTGTTTTGATT	3687	False	NA	NA	False	NA	NA	NA	64088614	64089936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_64089116_64089155
49287	chr5	+	4064	1	ISM	ENSMUSG00000046607.7	ENSMUST00000054836.7	5382	2	15667	0	15667	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGCCTCTGTGTGTTTT	4510	False	NA	NA	False	NA	NA	NA	118323479	118327543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_118323500_118327500
49288	chr7	-	1540	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	13	-666	0	666	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	68	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGCTGTAATACTTTAGA	NA	False	NA	NA	False	NA	NA	NA	81439213	81431263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
49289	chr15	+	2223	6	NIC	ENSMUSG00000068114.8	novel	2046	7	NA	NA	8	-5	intron_retention	FALSE	canonical	3	36	junction_2	6.62117814289874	201	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTAAACTATGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	82012135	82026395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_82012251_82014252_82014372_82015624_82016031_82018781_82018964_82019270_82019343_82025066
49291	chr3	-	2898	3	ISM	ENSMUSG00000027845.16	ENSMUST00000128716.2	532	4	-172	-1393	14	251	intron_retention	FALSE	canonical	3	75	junction_1	0	3	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCAGTATATTGTTATT	NA	False	NA	NA	False	NA	NA	NA	103716680	103709949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_103711372_103714709_103714893_103715387
49292	chr17	+	1836	10	NIC	ENSMUSG00000024369.17	novel	1607	11	NA	NA	12	19	intron_retention	TRUE	canonical	3	434	junction_4	41.3533404386163	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTGTCCTCACACTCTC	16	False	NA	NA	False	NA	NA	NA	35069395	35075367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
49293	chr13	-	2292	6	NNC	ENSMUSG00000059839.10	novel	3744	4	NA	NA	16	-821	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.58569601750758	1	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTCAGAAAGTGTTTATT	5473	False	NA	NA	False	NA	NA	NA	67632315	67620452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67621214_67621532_67622674_67622956_67623071_67629288_67629382_67629837_67629965_67632259
49294	chrUn_JH584304v1	-	1521	9	Intergenic	novelGene_4615	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	6	junction_2	302.511544201209	1	33	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGCCAACAATCTTCTG	NA	False	NA	NA	False	NA	NA	NA	59725	52196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53535_53696_54335_54480_54720_54868_55111_55249_55511_55702_56985_57152_58563_58836_59591
49295	chr7	+	2883	4	NNC	ENSMUSG00000045411.17	novel	2131	7	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_3	368.313574130643	1	170	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	NA	False	NA	NA	NA	43896659	43901741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43897720_43898965_43899024_43899444_43899505_43900036
49296	chr10	+	912	8	ISM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	10400	151	-153	-151	3prime_fragment	FALSE	canonical	3	604	junction_2	38.4256504466079	6	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTGGAGTCTCTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	127112655	127117668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
49298	chr11	-	1509	3	NNC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	0	-1	intron_retention	TRUE	non_canonical	0	0	junction_2	929	880	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAATGTGTCCTGGTCTT	6003	False	NA	NA	False	NA	NA	NA	116743920	116740732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116741788_116742846_116743062_116743681
49299	chr2	-	2310	11	NNC	ENSMUSG00000058835.15	novel	3067	11	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	97.1851840560072	50	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAATTTGGATATTGT	NA	False	NA	NA	False	NA	NA	NA	22930199	22830383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_22830594_22831336_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
49302	chr6	-	3056	22	Antisense	novelGene_ENSMUSG00000030323.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	10	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCACTTCAGCTACCTGC	NA	False	NA	NA	False	NA	NA	NA	115894305	115830566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_115830670_115839674_115839740_115841322_115841410_115852203_115852284_115854435_115854511_115857599_115857666_115858431_115858583_115861294_115861370_115863866_115864060_115864185_115864325_115865679_115865883_115867422_115867558_115868820_115868988_115871179_115871378_115876436_115876579_115879816_115879877_115882757_115882913_115887180_115887353_115889391_115889562_115890830_115890934_115892865_115893006_115893928
49304	chrX	+	1563	2	Fusion	ENSMUSG00000119320.1_ENSMUSG00000008682.14	novel	531	2	NA	NA	-2	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	43	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTTTTTGTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	73314460	73316736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_73315308_73316020
49307	chr8	+	2523	7	NIC	ENSMUSG00000031930.12	novel	2098	8	NA	NA	-20	-1	intron_retention	FALSE	canonical	3	617	junction_2	53.7290010660496	2	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCTGTTGCAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	108277948	108283843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_108279069_108280600_108280735_108281064_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
49308	chr16	-	1226	10	FSM	ENSMUSG00000058240.15	ENSMUST00000114023.3	1154	10	-72	0	29	0	multi-exon	FALSE	canonical	3	81	junction_1	469.417790170329	224	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTTTTTCTCTTTTTT	9030	False	NA	NA	False	NA	NA	NA	91525661	91491225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91491554_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
49309	chr8	+	1490	11	FSM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	95	71	0	2	multi-exon	FALSE	canonical	3	2216	junction_5	95.6715736256073	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGCTCCAGCCCCATC	NA	False	NA	NA	False	NA	NA	NA	84441900	84449906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
49310	chr9	+	4280	24	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	124213	5	6118	-5	3prime_fragment	FALSE	canonical	3	21	junction_1	10.175213592088	42	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGTGGGGCCGCTGTTG	8770	False	NA	NA	False	NA	NA	NA	66382020	66416052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_66382147_66383202_66383403_66383609_66383716_66386226_66386374_66386712_66386815_66388143_66388318_66389085_66389380_66390938_66391005_66391159_66391286_66392180_66392320_66393348_66393531_66394205_66394362_66395230_66395354_66396611_66396715_66399239_66399410_66400437_66400577_66403181_66403352_66404450_66404621_66404870_66405037_66405961_66406039_66408457_66408711_66409211_66409365_66411869_66412176_66415420
49314	chr7	-	2024	5	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-6	-1	intron_retention	FALSE	canonical	3	42	junction_4	17.5267652463311	213	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGACGAGTCCAGACTTT	NA	False	NA	NA	False	NA	NA	NA	30298300	30289108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30291391_30298204
49315	chr1	-	1904	9	NNC	ENSMUSG00000003051.14	novel	1901	9	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	211.549011756141	1	86	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGCTCTCTGTGTACT	NA	False	NA	NA	False	NA	NA	NA	135186178	135181311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135182119_135182662_135182859_135183716_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
49316	chr2	+	2559	13	FSM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	19	5	-6	-5	multi-exon	FALSE	canonical	3	20	junction_9	6.42693982821961	77	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAACTACTGCTTCTACCT	NA	False	NA	NA	False	NA	NA	NA	84767026	84788848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
49317	chr4	+	2422	8	NNC	ENSMUSG00000028581.18	novel	2600	8	NA	NA	-23	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	170.132241482433	1	138	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCTCATGTGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	130640595	130663451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656747_130656854_130658081_130658178_130659327_130659421_130661771
49318	chr1	+	1792	3	Antisense	novelGene_ENSMUSG00000038633.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	69	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGGCGGCAGCTCGAGGC	NA	False	NA	NA	False	NA	NA	NA	182103532	182110309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182104457_182106538_182107284_182110186
49319	chr10	+	1211	7	NNC	ENSMUSG00000006728.13	novel	2038	7	NA	NA	72	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2596.96185741895	2	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATGGTCTTTATTTTTC	NA	False	NA	NA	False	NA	NA	NA	126899556	126903152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901149_126901969_126902118_126902824
49320	chr6	+	2867	3	FSM	ENSMUSG00000073096.12	ENSMUST00000114545.8	2913	3	46	0	13	0	multi-exon	FALSE	canonical	3	10	junction_1	2.5	55	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTCTTGGTCATGGTAT	8325	False	NA	NA	False	NA	NA	NA	48531775	48547656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48531917_48533888_48534029_48545070
49321	chr11	-	1676	12	NIC	ENSMUSG00000018697.15	novel	1822	13	NA	NA	-1	-9	combination_of_known_splicesites	FALSE	canonical	3	9	junction_8	148.688370106605	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTTGTCACTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	84404349	84313689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84401024_84401244_84402308_84402405_84402966_84403156_84404117
49322	chr19	+	1629	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	147	-1	-6	1	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTACTGTTTGTCTTGTGTC	4207	False	NA	NA	False	NA	NA	NA	41900508	41907100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
49323	chrX	-	2693	14	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-44	-56877	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	192.095975765567	1	131	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACCTGCAGTCCCAATGA	NA	False	NA	NA	False	NA	NA	NA	59224493	59158195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223937
49324	chr6	-	1281	10	NNC	ENSMUSG00000019210.11	novel	1312	9	NA	NA	-9	4	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	409.922214843526	2075	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGATTTAGTTGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	120799662	120772210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120772726_120773358_120773426_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
49325	chr10	-	2174	1	Genic_Genomic	ENSMUSG00000001666.9_ENSMUSG00000092360.2	novel	NA	NA	NA	NA	11	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTCTTTGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	75609237	75607063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_75607100_75609200
49327	chr7	-	1289	7	NIC	ENSMUSG00000025465.14	novel	1557	8	NA	NA	1	-7	combination_of_known_junctions	FALSE	canonical	3	7	junction_6	635.883025581138	68	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACCATGCCGTAACTATT	NA	False	NA	NA	False	NA	NA	NA	139696334	139685637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139696219
49328	chr4	-	985	4	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	12206	4	-212	-4	3prime_fragment	FALSE	canonical	3	9851	junction_2	447.097304845377	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTCTAGTTTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	119139595	119135181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342
49329	chr4	+	4277	3	ISM	ENSMUSG00000041025.16	ENSMUST00000174078.2	5716	9	39304	4	39304	-1	3prime_fragment	FALSE	canonical	1	2	junction_1	1.5	23	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACATGGTTTATGCTGCT	3029	False	NA	NA	False	NA	NA	NA	139341334	139347689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_139341430_139342241_139342373_139343638
49330	chr12	-	4515	1	ISM	ENSMUSG00000041702.8	ENSMUST00000223554.2	8157	12	93091	4	54966	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	80	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGCTGAGTTGGACAT	6215	False	NA	NA	False	NA	NA	NA	102751574	102747059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_102747100_102751600
49331	chr5	-	3572	10	Antisense	novelGene_ENSMUSG00000049971.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCCCGGGCGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	127770936	127709320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_127709415_127721381_127721538_127727751_127727850_127734147_127734202_127740404_127740440_127741712_127741770_127754265_127754363_127755152_127755203_127766898_127766945_127768051
49332	chr17	-	2247	22	NNC	ENSMUSG00000024018.19	novel	7117	5	NA	NA	15949	26693	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	72	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGGGCCGGCTAGCTGC	NA	False	NA	NA	False	NA	NA	NA	29919988	29879637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29879746_29882145_29882276_29893112_29893264_29895103_29895262_29897961_29898030_29899560_29899633_29900889_29900985_29901093_29901168_29904823_29905023_29906008_29906127_29908867_29908929_29909249_29909414_29910217_29910397_29913219_29913279_29913758_29913815_29914397_29914451_29916062_29916189_29916921_29917048_29917612_29917703_29918192_29918261_29919205_29919251_29919941
49333	chr4	-	2132	7	NIC	ENSMUSG00000028684.15	novel	1489	10	NA	NA	3	-3	intron_retention	FALSE	canonical	3	336	junction_4	15.0932287982246	4	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTAGCATGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	116851551	116847416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116850508_116850584_116850665_116850781
49334	chr8	-	1922	15	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	74	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTCCTCCTGCCCAACAC	NA	False	NA	NA	False	NA	NA	NA	107649711	107624749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107624882_107625072_107625158_107627477_107627568_107630863_107631077_107632756_107632926_107633019_107633114_107634845_107634932_107637571_107637640_107638860_107638981_107639979_107640135_107642785_107642889_107644210_107644299_107645244_107645437_107648802_107648913_107649494
49335	chr6	-	1720	8	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-24	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	3547.12859441353	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTACTTGGTGTAATGC	NA	False	NA	NA	False	NA	NA	NA	51446776	51438104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439036_51440390_51440474_51441068_51441192_51441407_51441460_51443535_51443683_51443885_51444033_51444164_51444276_51446650
49337	chrX	+	1207	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	33	0	30	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059336	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
49338	chr12	-	1790	2	FSM	ENSMUSG00000096458.8	ENSMUST00000173760.9	1312	2	20	-498	20	498	multi-exon	FALSE	canonical	2	4	junction_1	0	151	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	NA	False	NA	NA	False	NA	NA	NA	102709884	102707990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_102709654_102709757
49339	chr4	+	2228	9	NIC	ENSMUSG00000028910.13	novel	1337	10	NA	NA	-5	-3	intron_retention	FALSE	canonical	3	105	junction_5	17.0861786248418	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGTCATGCGTGTGGAG	NA	False	NA	NA	False	NA	NA	NA	131570798	131595094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
49340	chr12	+	1357	8	NNC	ENSMUSG00000021103.13	novel	3688	7	NA	NA	454	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	135.958727230745	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	73170944	73319625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_73171144_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
49341	chr6	-	1636	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	5	-240	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	454.844764727484	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCTAGTACATCAGAAGG	NA	False	NA	NA	False	NA	NA	NA	120893809	120870054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120871254_120872579_120872626_120874228_120874321_120877116_120877328_120878683_120878750_120893787
49342	chr4	-	1190	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	14	0	5	0	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	2780	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	NA	False	NA	NA	NA	134642321	134625159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
49344	chr10	+	1840	11	FSM	ENSMUSG00000019845.9	ENSMUST00000213459.2	4192	11	7	2345	7	100	multi-exon	FALSE	canonical	1	1	junction_7	48.3434587095297	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATGTGTAAACGGCTGC	NA	False	NA	NA	False	NA	NA	NA	39010070	39026193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39021568_39021710_39023307_39023449_39023758_39023934_39025454
49345	chr5	+	4076	1	ISM	ENSMUSG00000075703.17	ENSMUST00000145167.9	6803	10	35763	8	4800	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	33	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCTTTTTAATTGTTTT	7273	False	NA	NA	False	NA	NA	NA	30473341	30477417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_30473300_30477400
49346	chr2	-	2535	11	NIC	ENSMUSG00000036890.14	novel	2564	11	NA	NA	-1	-13	combination_of_known_junctions	TRUE	canonical	3	29	junction_10	9.30644937664198	139	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTAATTAGCATATTCA	NA	False	NA	NA	False	NA	NA	NA	44817277	44454439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44750302_44750339_44817153
49347	chr18	+	222	1	FSM	ENSMUSG00000058625.7	ENSMUST00000078739.7	1355	1	-111	1244	-111	-1244	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACAAGACCATTGGGGG	NA	False	NA	NA	False	NA	NA	NA	82356475	82356697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82356500_82356700
49349	chrX	-	2062	16	NNC	ENSMUSG00000036932.15	novel	2237	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	521.904444212625	1	91	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	47602303	47563820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_47564057_47564435_47564637_47566576_47566702_47569001_47569145_47570858_47570983_47571598_47571686_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593816_47602112
49351	chr19	+	1773	12	NNC	ENSMUSG00000003559.9	novel	1736	11	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_11	66.6961780410936	558	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	5987	False	NA	NA	False	NA	NA	NA	46695909	46729538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46726951_46726998_46728899
49353	chr12	+	2061	9	NNC	ENSMUSG00000037486.19	novel	2715	5	NA	NA	-5357	-1984	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	26.0669210878462	3	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCAGCCCACATAGAAAT	NA	False	NA	NA	False	NA	NA	NA	3519301	3550482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3519396_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224_3546937_3549978
49356	chr6	+	1120	6	NNC	ENSMUSG00000079426.14	novel	2270	6	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	522.364087586427	19	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGCTGCATGAGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	113355152	113366601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365996
49357	chr5	-	1228	9	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	17	412	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	545.359743655507	1720	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTAAGCCTTTGAGCTAC	NA	False	NA	NA	False	NA	NA	NA	25047590	25008252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182_25047418_25047509
49358	chr15	-	1741	9	FSM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	-33	2	-22	-2	multi-exon	FALSE	canonical	3	128	junction_8	22.8988946239769	245	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTTATTATAT	NA	False	NA	NA	False	NA	NA	NA	76422968	76419922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
49359	chr8	+	3266	7	FSM	ENSMUSG00000019261.4	ENSMUST00000019405.4	3314	7	50	-2	0	0	multi-exon	FALSE	canonical	3	269	junction_1	20.5236990384829	204	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTACTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	71358625	71370173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71358772_71363588_71363694_71364489_71364573_71365156_71365298_71365549_71367639_71368994_71369219_71369695
49360	chr16	+	2373	3	FSM	ENSMUSG00000054939.7	ENSMUST00000041778.8	5897	3	-10	3534	-10	-3534	multi-exon	FALSE	canonical	2	5	junction_1	1	16	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGTGCTGGTAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	3665121	3673210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_3666139_3667214_3667435_3672074
49361	chr6	+	2247	15	NNC	ENSMUSG00000001630.14	novel	4550	14	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	42.5297015061719	2	32	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTGATCAGTCAATGGAC	NA	False	NA	NA	False	NA	NA	NA	146626498	146678054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673651_146673691_146673720_146674815_146674912_146676897_146676990_146677091
49362	chr10	+	3507	2	Intergenic	novelGene_3426	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCTACTCCCAATATCCC	5515	False	NA	NA	False	NA	NA	NA	39375454	39379301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_39378862_39379201
49363	chr11	-	2615	19	NIC	ENSMUSG00000020792.16	novel	3449	20	NA	NA	32	442	combination_of_known_junctions	FALSE	canonical	2	4	junction_13	62.4539583499737	306	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCCACCTGTTTCCTG	8959	False	NA	NA	False	NA	NA	NA	116197521	116179446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116187555_116187625_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
49364	chr7	-	2721	3	NNC	ENSMUSG00000030823.7	novel	2735	3	NA	NA	22	-48	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTTGTATTGTATGTTA	NA	False	NA	NA	False	NA	NA	NA	126986316	126982495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126984806_126985691_126985806_126986019
49365	chr5	-	1837	11	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-44	-570	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	244.528853103269	1	84	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTCAAAATTTTAGTGC	NA	False	NA	NA	False	NA	NA	NA	34093638	34055829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056855_34057761_34057869_34058534_34058624_34058931_34058996_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
49367	chr11	-	1193	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	41	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7899.66008586586	6	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9982	False	NA	NA	False	NA	NA	NA	69812171	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807895_69808000_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
49368	chr14	+	3484	15	ISM	ENSMUSG00000021998.17	ENSMUST00000131802.2	3594	16	7633	16	62	-16	3prime_fragment	FALSE	canonical	2	7	junction_11	4.86396579606663	32	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAATCTTTCCGAATA	NA	False	NA	NA	False	NA	NA	NA	75435401	75468240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
49369	chr2	+	1339	7	NNC	ENSMUSG00000027160.17	novel	2070	6	NA	NA	19	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	179.681199164891	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACAGTCTTTCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	109848180	109874991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_109848262_109848303_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
49371	chr4	+	925	4	Antisense	novelGene_ENSMUSG00000028639.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	768	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACGACGTGGATAGCGTC	1731	False	NA	NA	False	NA	NA	NA	119135189	119139543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_119135565_119136130_119136396_119138765_119138849_119139341
49372	chr16	-	1539	2	ISM	ENSMUSG00000022974.13	ENSMUST00000023698.12	2732	18	26018	25	1085	-25	3prime_fragment	FALSE	canonical	3	357	junction_1	0	7	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTGTCCTTAAATGTGA	NA	False	NA	NA	False	NA	NA	NA	90815034	90811828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_90812067_90813733
49373	chr2	+	1588	9	ISM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	1265	5	-101	1	3prime_fragment	FALSE	canonical	3	1876	junction_6	201.098817438094	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130117614	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
49374	chr5	-	3010	12	NNC	ENSMUSG00000029560.13	novel	2627	11	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	78.7124697399464	3	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTTTCCACGCTGCAGT	7753	False	NA	NA	False	NA	NA	NA	140374984	140326055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140370940_140371355_140374902
49375	chr11	-	3457	3	NIC	ENSMUSG00000034247.10	novel	5968	12	NA	NA	-18	-27400	intron_retention	FALSE	canonical	3	54	junction_2	11.5	11	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCAAAGCTTTTCGGTTT	NA	False	NA	NA	False	NA	NA	NA	103303531	103284842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_103288101_103294650_103294737_103303418
49376	chr2	-	2415	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-4	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.5279496178154	1	124	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATGTGATGTTTTAATTA	NA	False	NA	NA	False	NA	NA	NA	29677676	29666117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29666232_29666386_29667961_29668739_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
49377	chr18	+	1762	15	Intergenic	novelGene_4545	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.515078753637713	9	65	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTCAGCACGCAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	56659822	56695299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_56660080_56661348_56661424_56664560_56664638_56664783_56664880_56665051_56665168_56665557_56665667_56667261_56667351_56670278_56670399_56675289_56675395_56678036_56678114_56679974_56680020_56681518_56681657_56692150_56692361_56693850_56693899_56695099
49380	chrX	+	1929	6	FSM	ENSMUSG00000046774.18	ENSMUST00000151231.10	1940	6	5	6	5	-2	multi-exon	FALSE	canonical	2	3	junction_4	112.716280989039	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACAGCTGTACTTTTGC	NA	False	NA	NA	False	NA	NA	NA	100838266	100842242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841947_100841990_100842072
49381	chr18	+	1711	1	FSM	ENSMUSG00000038299.17	ENSMUST00000234434.2	2666	1	-70	1025	-1	-1025	mono-exon	FALSE	NA	NA	NA	NA	NA	12	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCATTTTAGTCCCCAACC	8991	False	NA	NA	False	NA	NA	NA	32970304	32972015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32970300_32972000
49382	chr6	-	1155	7	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2615.0992757871	3	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTAAAGGAAATTGTGTA	NA	False	NA	NA	False	NA	NA	NA	51446822	51439752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442194_51444135_51444276_51446650
49383	chr5	-	1759	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	9	48	9	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTATTATTTTCTACAA	NA	False	NA	NA	False	NA	NA	NA	134975779	134974020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134974000_134975800
49386	chr7	-	2030	14	NNC	ENSMUSG00000037032.17	novel	2690	15	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	42.0359102611004	2	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTTCCTGTGCTCA	NA	False	NA	NA	False	NA	NA	NA	105230451	105207690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223031_105230368
49387	chr10	-	1090	9	NNC	ENSMUSG00000019942.14	novel	1253	9	NA	NA	-5	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	739.545257235823	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGTGGTGGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	69188745	69174131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69181940_69182045_69182062_69185925_69185989_69188665
49388	chr5	+	1983	13	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	22	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	216.539113095071	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTAGATTGTAAACAATA	NA	False	NA	NA	False	NA	NA	NA	64250314	64285501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261270_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
49389	chr10	-	1989	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	47	-177	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	787.093397589464	1	114	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGTTCCTATTACTGTGG	NA	False	NA	NA	False	NA	NA	NA	127358186	127353184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354822_127354983_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356203_127356287_127356786_127356985_127358156
49390	chr3	-	4469	16	FSM	ENSMUSG00000033502.16	ENSMUST00000090464.7	4485	16	16	0	16	0	multi-exon	FALSE	canonical	2	9	junction_7	3.61232458243842	25	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGGGCATTCATTAGTT	NA	False	NA	NA	False	NA	NA	NA	116217665	116066201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_116068358_116087374_116087736_116088399_116088523_116090779_116090828_116092085_116092199_116101788_116101949_116115730_116115870_116122127_116122359_116126443_116126532_116142102_116142166_116144854_116144922_116160275_116160356_116186470_116186564_116198191_116198268_116216215_116216307_116217085
49392	chr11	+	3514	4	NNC	ENSMUSG00000020455.17	novel	3522	5	NA	NA	-11	-7	intron_retention	FALSE	canonical	0	0	junction_3	37.249906785864	1	99	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGTCATGTTCTCTGC	1677	False	NA	NA	False	NA	NA	NA	58868929	58882274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_58869471_58872066_58872163_58872818_58873050_58879628
49393	chr5	-	1704	5	FSM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	53	5	10	-5	multi-exon	FALSE	canonical	3	1353	junction_4	27.6541136180497	575	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCATGTGTCTGTGGCGC	NA	False	NA	NA	False	NA	NA	NA	114828992	114807463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
49394	chr14	-	1460	4	NIC	ENSMUSG00000021811.8	novel	1631	5	NA	NA	3	-222	intron_retention	FALSE	canonical	3	896	junction_2	69.2290882986817	13	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGGTGGATTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	20438941	20434927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20435547_20435867_20435955_20438024_20438509_20438671
49395	chr9	-	2088	22	FSM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	201	21	176	-21	multi-exon	FALSE	canonical	3	66	junction_19	9.60607328677695	165	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTATTATTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	63284983	63071070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
49396	chrX	+	4044	9	FSM	ENSMUSG00000025529.15	ENSMUST00000113409.8	4330	9	285	1	285	-1	multi-exon	FALSE	canonical	2	5	junction_6	4.35889894354067	16	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTCAAAGTTTTATAATT	NA	False	NA	NA	False	NA	NA	NA	111510507	111544758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_111510603_111513964_111514070_111524589_111525133_111533648_111533805_111534435_111534574_111536866_111537002_111537800_111537846_111541522_111541667_111542075
49397	chr8	+	1852	14	NNC	ENSMUSG00000031479.10	novel	3574	14	NA	NA	37	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	110.796791443087	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCCAAATAAACCAAGAATG	NA	False	NA	NA	False	NA	NA	NA	22682861	22708585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22682983_22688913_22689572_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
49398	chrX	+	1024	5	ISM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	711	131	647	-131	3prime_fragment	FALSE	canonical	3	351	junction_4	22.0496598613221	4	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTACAAATGTGGGTATC	NA	False	NA	NA	False	NA	NA	NA	99538607	99559600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
49399	chr7	-	2426	2	Genic_Genomic	ENSMUSG00000086261.2	novel	1447	1	NA	NA	-38769	625	multi-exon	FALSE	canonical	0	0	junction_1	0	8	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGACACTTGTGGCAT	NA	False	NA	NA	False	NA	NA	NA	106838165	106797324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_106799495_106837909
49401	chr11	-	1827	5	FSM	ENSMUSG00000023764.19	ENSMUST00000118627.2	831	5	-9	-987	6	987	multi-exon	FALSE	canonical	3	18	junction_1	37.5724300518346	135	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGACTGGGTTTCACTGT	8009	False	NA	NA	False	NA	NA	NA	3143433	3134580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3135975_3136064_3136137_3137239_3137411_3138940_3139057_3143359
49404	chr1	-	1394	5	NNC	ENSMUSG00000026701.16	novel	2387	5	NA	NA	1	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	755.494995019821	5	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTGTCATGTTTTAAAGT	NA	False	NA	NA	False	NA	NA	NA	161078735	161068578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_161069417_161071183_161071292_161071765_161071913_161074826_161074984_161078591
49405	chr17	-	2684	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_9	134.492557169102	192	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5823	False	NA	NA	False	NA	NA	NA	46593935	46568799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46591341_46591471_46593271_46593366_46593885
49406	chr10	+	832	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	-8	334	-8	-330	multi-exon	FALSE	canonical	3	275	junction_1	26	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTAGGCTCTCTTTCATC	NA	False	NA	NA	False	NA	NA	NA	128583749	128602098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128583868_128601015_128601110_128601478
49407	chr7	+	2610	9	ISM	ENSMUSG00000038763.13	ENSMUST00000107348.2	6369	14	36565	1	-666	-1	3prime_fragment	FALSE	canonical	3	11	junction_1	5.1234753829798	78	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCACGGTGTGATGATTA	NA	False	NA	NA	False	NA	NA	NA	80743912	80755359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_80743933_80744654_80744803_80745149_80745278_80745405_80745442_80748494_80748770_80749918_80750008_80750655_80750880_80753092_80753142_80753718
49408	chrX	+	3744	11	FSM	ENSMUSG00000017057.10	ENSMUST00000033418.8	3712	11	-29	-3	-29	3	multi-exon	FALSE	canonical	3	38	junction_2	4.27083130081252	44	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTTTTTTTTGGTCTTA	NA	False	NA	NA	False	NA	NA	NA	35375733	35434915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_35375929_35390297_35390438_35394256_35394396_35396616_35396738_35404865_35405051_35407663_35407816_35412302_35412351_35412631_35412765_35415670_35415768_35419195_35419281_35432466
49409	chr7	+	1877	8	Antisense	novelGene_ENSMUSG00000047554.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCGGCGGAGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	109573257	109585437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_109574163_109575805_109575937_109577912_109578022_109578595_109578690_109580195_109580324_109581861_109581984_109582724_109582843_109585167
49410	chr6	+	1757	6	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	956.616746665037	4	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	51447640	51460684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458778_51459439
49412	chr11	+	1482	10	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	189	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	230.324301693541	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1419	False	NA	NA	False	NA	NA	NA	101010952	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013574_101014795_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
49414	chr11	+	2635	2	NIC	ENSMUSG00000020691.14	novel	2556	8	NA	NA	12	-5160	intron_retention	FALSE	canonical	3	238	junction_1	0	5	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTATGTTGTCAGGTCT	NA	False	NA	NA	False	NA	NA	NA	105017316	105021322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_105019902_105021272
49416	chr8	-	1454	3	NNC	ENSMUSG00000037070.11	novel	1695	2	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304	2	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTCTTGATTTCTCC	NA	False	NA	NA	False	NA	NA	NA	79235459	79231897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_79232188_79232314_79233447_79235427
49417	chr9	+	1144	1	Intergenic	novelGene_1118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGCTACACCCCAAAATT	2385	False	NA	NA	False	NA	NA	NA	78431453	78432597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_78431500_78432600
49418	chr9	-	1529	10	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-10	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2900.2631596222	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTCAAGAGATTGTGT	NA	False	NA	NA	False	NA	NA	NA	89996673	89973731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984435_89989287_89989356_89996561
49420	chr18	+	2994	1	NIC	ENSMUSG00000037253.9	novel	3738	2	NA	NA	16526	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	122	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAACTTGAATGTATTCT	NA	False	NA	NA	False	NA	NA	NA	73722640	73725634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_73722600_73725600
49421	chr13	-	1182	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.944400230224	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTAACGGTGTCCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311514_34311839_34312261_34312455_34312515_34312854_34312966_34313228_34313338_34314159
49424	chr4	-	1962	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9771	1207	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	4	57	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTGTTTGTTTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	101828475	101823442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101824980_101825125_101825438_101828362
49425	chr6	-	1857	8	NIC	ENSMUSG00000048930.13	novel	2848	9	NA	NA	-10	12	intron_retention	FALSE	canonical	3	225	junction_7	62.2332675651595	260	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCCGCAAGTTTAGTATC	NA	False	NA	NA	False	NA	NA	NA	113354347	113343603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113352221_113352800_113353026_113354276
49426	chr11	+	2533	3	FSM	ENSMUSG00000058755.4	ENSMUST00000075221.3	2272	3	-260	-1	-260	1	multi-exon	TRUE	canonical	3	46	junction_2	1.5	85	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTCAGTCTTTTATT	8033	False	NA	NA	False	NA	NA	NA	4186159	4191027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4186914_4188405_4188543_4189385
49427	chr16	-	2733	3	NIC	ENSMUSG00000063445.15	novel	1155	5	NA	NA	4	1086	intron_retention	FALSE	canonical	3	167	junction_2	12	8	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCCATTACTCCTGGC	4852	False	NA	NA	False	NA	NA	NA	4536964	4531286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4531695_4532280_4534400_4536758
49428	chr2	+	1036	8	Fusion	ENSMUSG00000078886.13_ENSMUSG00000078887.11	novel	1665	4	NA	NA	-741309	221142	multi-exon	TRUE	non_canonical	0	0	junction_1	83.0522333798903	1001	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCCAGAATGTTTCCGT	NA	False	NA	NA	False	NA	NA	NA	174919702	175993238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174919822_175664841_175664897_175670021_175670149_175670349_175670411_175769311_175769602_175770357_175770363_175841509_175841552_175992901
49429	chr5	-	3589	6	ISM	ENSMUSG00000055725.12	ENSMUST00000112969.10	2257	7	125	6290	-5	2662	5prime_fragment	TRUE	canonical	3	151	junction_3	20.8096131631513	107	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTGCTGCCTGCCTTCT	NA	False	NA	NA	False	NA	NA	NA	97259307	97241128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_97243920_97245337_97245429_97247404_97247603_97251218_97251375_97256024_97256188_97259117
49430	chr11	+	1683	12	ISM	ENSMUSG00000020549.15	ENSMUST00000101049.9	2884	24	13249	-5	6850	5	3prime_fragment	FALSE	canonical	3	305	junction_6	26.2448735647507	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGTGTGGGGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	64883148	64892431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
49431	chr3	-	3174	1	FSM	ENSMUSG00000104831.2	ENSMUST00000197444.2	1688	1	-47	-1439	-47	1439	mono-exon	FALSE	NA	NA	NA	NA	NA	30	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAATAGAGACTTGTG	NA	False	NA	NA	False	NA	NA	NA	54542036	54538862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_54538900_54542000
49432	chr14	-	1303	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	324	254	-12	51	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAGTTCCTTTACACAC	NA	False	NA	NA	False	NA	NA	NA	63746217	63730049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
49433	chr6	-	1507	4	ISM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	5312	466	523	1	3prime_fragment	FALSE	canonical	3	7593	junction_2	1836.59364646136	2	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGACAGTTTGGACTTT	3742	False	NA	NA	False	NA	NA	NA	87822776	87820062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637
49435	chr18	+	1664	4	FSM	ENSMUSG00000060450.15	ENSMUST00000237416.2	618	4	-16	-1030	0	2	multi-exon	FALSE	canonical	0	0	junction_3	98.2694707876708	47	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAGTAGACACGGTGTCC	975	False	NA	NA	False	NA	NA	NA	38429736	38450897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_38429852_38432806_38432980_38433481_38433538_38449577
49436	chr11	+	1347	10	Antisense	novelGene_ENSMUSG00000025580.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	43	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCAGCGCCGCGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	119179188	119190912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_119179386_119179485_119179614_119179694_119179803_119183644_119183759_119184382_119184522_119184717_119184862_119185152_119185233_119185400_119185535_119188658_119188708_119190658
49437	chr3	+	3434	6	FSM	ENSMUSG00000025766.15	ENSMUST00000108065.9	3452	6	19	-1	15	1	multi-exon	FALSE	canonical	3	14	junction_1	11.0199818511647	43	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCTCATATTTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	41697067	41713366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41697125_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
49438	chr1	-	2432	1	FSM	ENSMUSG00000100041.2	ENSMUST00000185629.2	2469	1	191	-154	191	154	mono-exon	FALSE	NA	NA	NA	NA	NA	1	71	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGTGGAAATTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	108306977	108304545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_108304500_108307000
49440	chr7	+	1768	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	-3	2890	-3	0	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	426	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGTGTAGAGTACTTCT	NA	False	NA	NA	False	NA	NA	NA	139705566	139714247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
49441	chr3	-	1627	8	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-4423	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	142.468757763853	1176	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGATCCTGGAGTCCGGT	NA	False	NA	NA	False	NA	NA	NA	95045745	95037035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155_95042008_95045668
49442	chr12	+	4263	8	Intergenic	novelGene_4341	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	35	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGCCCCGGGTACACC	NA	False	NA	NA	False	NA	NA	NA	26357425	26439531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_26360786_26364015_26364111_26367649_26367798_26370952_26371159_26377276_26377338_26377501_26377610_26389307_26389449_26439387
49443	chr2	-	3142	13	NNC	ENSMUSG00000026740.13	novel	5070	13	NA	NA	4582	48848	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	178	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGTTTGTCCTTTTC	2582	False	NA	NA	False	NA	NA	NA	18217131	18151616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_18151667_18175062_18175110_18175853_18175888_18191031_18191206_18201391_18201509_18202732_18202807_18208409_18208558_18210796_18210998_18211357_18211437_18211585_18211953_18212590_18212691_18213560_18213759_18215578
49444	chr7	-	1409	8	NNC	ENSMUSG00000051007.16	novel	1898	8	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	60.2725104023723	6	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGAACTCATTTTTG	5478	False	NA	NA	False	NA	NA	NA	140994008	140988109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990735_140990799_140990898_140991005_140991710_140991788_140993914
49447	chr17	-	2049	4	FSM	ENSMUSG00000057835.8	ENSMUST00000079642.8	2018	4	-35	4	-35	-4	multi-exon	FALSE	canonical	3	17	junction_3	5.43650214343336	29	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGCTTCATTCTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	56185965	56171895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56173651_56175302_56175364_56175558_56175686_56185859
49448	chr3	-	755	1	Antisense	novelGene_ENSMUSG00000102490.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	60768503	60767748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_60767700_60768500
49449	chr10	-	1159	5	ISM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	37	10246	37	-23	5prime_fragment	FALSE	canonical	3	1399	junction_1	102.60726095165	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCAGATGATGACCGCTG	NA	False	NA	NA	False	NA	NA	NA	85793650	85784746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
49450	chr8	-	3116	11	NNC	ENSMUSG00000036534.7	novel	3333	12	NA	NA	613	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	102.31036115663	1	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTGTCTCCTTTATCT	NA	False	NA	NA	False	NA	NA	NA	96579537	96562550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96564300_96567041_96567097_96568149_96568202_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429
49451	chr18	-	2878	1	ISM	ENSMUSG00000024286.9	ENSMUST00000053917.6	5757	10	134969	0	71628	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGACTTCATCTCATATG	194	False	NA	NA	False	NA	NA	NA	9315181	9312303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_9312300_9315200
49453	chr11	+	2666	1	NIC	ENSMUSG00000078695.9	novel	546	4	NA	NA	3	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	31	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2455	False	NA	NA	False	NA	NA	NA	97576781	97579447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97576800_97579400
49454	chr3	+	2466	2	ISM	ENSMUSG00000105960.2	ENSMUST00000199846.2	3871	5	4161	0	4161	0	3prime_fragment	FALSE	canonical	3	92	junction_1	0	502	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGCAGCACTGTCTAAT	NA	False	NA	NA	False	NA	NA	NA	129551567	129557533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_129551788_129555287
49455	chr12	-	1105	4	NNC	ENSMUSG00000021242.10	novel	3299	4	NA	NA	-32	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1414.12713557005	11	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCAGGTGCTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	84819720	84803271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84803987_84807493_84807611_84812046_84812159_84819559
49456	chr7	-	1939	13	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-21	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	317.791718565618	702	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	NA	False	NA	NA	NA	16761755	16738576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756374_16756582_16761617
49458	chr8	-	2209	8	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-3	-416	intron_retention	FALSE	canonical	3	191	junction_6	15.9795788046966	1	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGGGGCCTCCCCAAACT	NA	False	NA	NA	False	NA	NA	NA	106578636	106572121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106576154_106576257_106576556_106578502
49459	chr1	-	3006	3	NIC	ENSMUSG00000042066.17	novel	3410	5	NA	NA	89	2075	intron_retention	FALSE	canonical	3	25	junction_2	3	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGAAGGTGGCCTACCA	NA	False	NA	NA	False	NA	NA	NA	132318930	132286688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_132288954_132308394_132308920_132318714
49460	chr10	-	2388	12	NIC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	73	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_10	11.696577164084	91	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	NA	False	NA	NA	NA	42354488	42188580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42354258
49461	chr2	+	2700	15	NIC	ENSMUSG00000027255.15	novel	3068	16	NA	NA	0	-97	intron_retention	FALSE	canonical	3	197	junction_9	18.835620835133	2	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATCCCTCCCCAGAGGGA	5852	False	NA	NA	False	NA	NA	NA	91095668	91107179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
49462	chr1	-	2293	7	NIC	ENSMUSG00000026694.20	novel	4541	8	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	2	8	junction_5	33.2536547698979	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTCTTGAAAGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	162376089	162361252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162373796_162374097_162375672
49463	chr4	-	1762	10	FSM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	38	13	-15	0	multi-exon	FALSE	canonical	3	210	junction_4	26.1538657058192	686	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	NA	False	NA	NA	NA	147953138	147945247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
49464	chr12	+	1628	9	ISM	ENSMUSG00000021144.15	ENSMUST00000109723.8	2790	20	32261	0	-793	0	3prime_fragment	FALSE	canonical	3	473	junction_6	36.575051264489	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCCCTTCTGCGTCTTT	NA	False	NA	NA	False	NA	NA	NA	113094158	113100826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
49465	chr9	+	756	6	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-163	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9209.98524645941	3	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGGTGACAAACCCT	NA	False	NA	NA	False	NA	NA	NA	64080657	64085785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082873_64082891_64085178_64085300_64085504
49466	chr9	-	2621	15	FSM	ENSMUSG00000010660.4	ENSMUST00000010804.4	2657	15	30	6	30	-6	multi-exon	FALSE	canonical	3	6	junction_14	9.15540433686184	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAATCCTTCTAGTCTCT	2868	False	NA	NA	False	NA	NA	NA	118922540	118900600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118922425
49467	chr11	+	3710	16	FSM	ENSMUSG00000020770.14	ENSMUST00000021116.12	3735	16	21	4	20	-4	multi-exon	FALSE	canonical	3	78	junction_13	17.1308688240459	51	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCGTGGCTTGTTTATAT	8843	False	NA	NA	False	NA	NA	NA	115921168	115952036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943985_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
49468	chr12	+	1493	8	FSM	ENSMUSG00000021134.18	ENSMUST00000094693.11	1527	8	30	4	0	0	multi-exon	FALSE	canonical	3	1278	junction_1	232.390680904869	6	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	80992307	80997277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
49469	chr17	+	3588	13	FSM	ENSMUSG00000042203.9	ENSMUST00000048677.9	3595	13	6	1	0	0	multi-exon	TRUE	canonical	3	108	junction_11	15.481844205391	149	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCGGGGCTTTGGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	29768764	29825868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
49471	chr7	-	2343	8	NIC	ENSMUSG00000058447.9	novel	2374	9	NA	NA	-84	-4	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	44.1093261460796	79	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATGTGTTCCACTGTGTC	9956	False	NA	NA	False	NA	NA	NA	29789919	29755462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29780515_29780643_29786524_29786585_29789712
49472	chr7	+	1002	3	ISM	ENSMUSG00000070837.7	ENSMUST00000207660.3	698	5	3929	-1	3929	1	3prime_fragment	FALSE	canonical	2	56	junction_2	140	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTCTTGCTTGAGTGAG	7009	False	NA	NA	False	NA	NA	NA	7002596	7006088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_7003127_7005355_7005531_7005791
49473	chr18	+	2353	11	NNC	ENSMUSG00000024576.15	novel	1222	11	NA	NA	4	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	907.451293458773	1	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAAACTGTTTCTGTAAG	432	False	NA	NA	False	NA	NA	NA	61688348	61721358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708513_61708621_61709577_61709657_61710248_61710317_61711733_61711845_61713409_61713523_61720496
49476	chr7	+	1642	11	FSM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	-233	47	-233	-28	multi-exon	FALSE	canonical	3	172	junction_3	24.7872951327893	22	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	127440702	127448144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
49477	chr17	-	2262	6	FSM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	174	7	174	-7	multi-exon	FALSE	canonical	3	983	junction_3	66.4090355298133	194	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTGTTCAGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	24292285	24266714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24268419_24274898_24275025_24276714_24276811_24278195_24278288_24279216_24279326_24292150
49478	chr5	+	2857	20	Antisense	novelGene_ENSMUSG00000098624.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	147	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGGAAGAGAAGAGCGGG	430	False	NA	58	True	NA	NA	NA	137293978	137305810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_137294171_137294250_137294374_137294478_137294582_137294728_137294882_137295034_137295233_137295346_137295493_137295599_137295771_137296059_137296248_137296489_137296567_137296653_137296714_137296989_137297146_137297819_137297937_137298016_137298114_137298227_137298416_137298509_137298674_137300385_137300566_137300789_137300942_137301176_137301303_137305307_137305448_137305684
49479	chr7	+	1263	5	FSM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	-13	-2	0	0	multi-exon	FALSE	canonical	3	14799	junction_4	1606.02496478106	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12660422_12660498
49480	chr16	+	1865	8	Antisense	novelGene_ENSMUSG00000005846.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTCATGCGCAGCCCGG	1896	False	NA	NA	False	NA	NA	NA	11010836	11021149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_11011602_11012329_11012575_11014136_11014267_11017189_11017355_11017434_11017584_11019158_11019295_11020181_11020322_11021014
49482	chr7	-	2133	1	NIC	ENSMUSG00000045757.7	novel	2508	3	NA	NA	982	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAATGATTTCTGCTCCT	9622	False	NA	NA	False	NA	NA	NA	127004973	127002840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_127002800_127005000
49483	chr4	-	1719	13	NNC	ENSMUSG00000028409.12	novel	2418	12	NA	NA	-9	-559	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	365.993586768342	27	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGAGGGAGAGTCGCTAT	16	True	NA	NA	False	NA	NA	NA	40757840	40737100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_40737396_40738289_40738341_40738397_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
49484	chr9	-	1197	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	22	1	22	-1	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	2618	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTCTCTCCTAACTGA	1495	False	NA	NA	False	NA	NA	NA	44318875	44315056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
49488	chr14	-	1395	8	NNC	ENSMUSG00000060373.16	novel	2843	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1536.09765314579	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8749	False	NA	NA	False	NA	NA	NA	52341461	52312258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321872_52341345
49489	chr1	-	3101	8	NIC	ENSMUSG00000070643.12	novel	3693	14	NA	NA	-2512	0	intron_retention	FALSE	canonical	3	38	junction_7	21.7743530094373	95	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGCCCTTTCTCTGCT	NA	False	NA	NA	False	NA	NA	NA	133316684	133310040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133312412_133313203_133313348_133313731_133313829_133313922_133314033_133314503_133314667_133314821_133314905_133316186_133316302_133316666
49490	chr15	-	1356	11	NIC	ENSMUSG00000022570.8	novel	1405	11	NA	NA	-1	-1	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	150.034695987295	1415	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGGACTCAGAAGCTGG	8931	False	NA	NA	False	NA	NA	NA	75801590	75796532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
49492	chr4	-	621	1	Intergenic	novelGene_1859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGCATGTGAGTATTCA	NA	False	NA	NA	False	NA	NA	NA	55357499	55356878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_55356900_55357500
49493	chr4	-	2465	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	64	20	-55	-20	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	12037	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAGGATGGAGTCCATGGA	5243	False	NA	NA	False	NA	NA	NA	138858360	138829144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
49494	chr17	+	3916	13	ISM	ENSMUSG00000024068.9	ENSMUST00000024869.8	4672	17	28282	9	-1	-9	3prime_fragment	FALSE	canonical	3	183	junction_2	21.4741446602394	75	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTTAATTTTTATAGTC	3959	False	NA	NA	False	NA	NA	NA	74674289	74698101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_74674431_74675822_74675957_74676186_74676281_74678424_74678500_74679253_74679326_74680278_74680355_74680657_74680750_74681117_74681198_74682077_74682121_74684035_74684116_74688964_74689036_74694028_74694070_74695184
49496	chr14	-	3454	19	NNC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_17	56.1860061220818	1	66	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAACTGTCTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	123220650	123156390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123216369_123216461_123220583
49497	chr1	-	4311	1	FSM	ENSMUSG00000026701.16	ENSMUST00000194613.2	2558	1	2	-1755	2	1755	mono-exon	FALSE	NA	NA	NA	NA	NA	7	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTGTAAGTTCCAACAAG	NA	False	NA	NA	False	NA	NA	NA	161078730	161074419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_161074400_161078700
49499	chr16	-	1218	10	NNC	ENSMUSG00000022889.8	novel	2294	10	NA	NA	-4	-706	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_8	316.946114515027	2990	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGTGTTTGTCCCTGCTC	NA	False	NA	NA	False	NA	NA	NA	84532122	84515169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_84515273_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531156_84531502_84532041
49500	chr2	+	881	6	Fusion	ENSMUSG00000078878.10_ENSMUSG00000095199.9	novel	461	4	NA	NA	-181061	74568	multi-exon	TRUE	non_canonical	0	0	junction_1	9.68297474952816	1	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCCAGAACGGTTTCCG	NA	False	NA	NA	False	NA	NA	NA	176031731	176488174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_176031797_176220823_176220909_176221114_176221176_176412300_176412591_176413262_176413309_176487840
49501	chrX	-	1214	9	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_7	662.694499750828	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	72974404	72965726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72974013_72974124_72974319
49502	chr19	-	1270	10	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	-1560	437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	496.933733814147	2	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATCCCTGGACTGAAT	NA	False	NA	NA	False	NA	NA	NA	5338442	5333705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337568_5337655_5337937_5338035_5338331
49503	chr6	+	3862	5	FSM	ENSMUSG00000067825.12	ENSMUST00000088561.10	4093	5	231	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	5.31507290636732	66	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATCTGTTTCTACTTTC	NA	False	NA	NA	False	NA	NA	NA	121160856	121173151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_121161442_121162668_121162810_121164217_121164526_121167059_121167207_121170470
49505	chr10	+	2188	5	NIC	ENSMUSG00000019808.9	novel	1466	6	NA	NA	359	-358	intron_retention	FALSE	canonical	3	637	junction_3	67.9977021670586	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCTGGCAATGTAAACAA	NA	False	NA	NA	False	NA	NA	NA	13428996	13438762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_13429106_13432595_13432701_13435857_13437555_13438380_13438454_13438558
49506	chr3	+	4193	6	ISM	ENSMUSG00000036863.13	ENSMUST00000200546.2	4712	7	9812	3	4794	-3	3prime_fragment	FALSE	canonical	3	76	junction_4	8.50881895447306	46	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACATGCTATTGTAATTGA	NA	False	NA	NA	False	NA	NA	NA	145704219	145727472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_145704866_145707077_145708169_145712770_145712898_145720012_145720195_145721350_145721583_145725557
49507	chr15	-	2058	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	0	2	0	-2	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	137	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGACTTTATCTTATTA	NA	False	NA	NA	False	NA	NA	NA	83395094	83367971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
49508	chr12	+	1724	3	ISM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	198	0	-90	0	intron_retention	FALSE	canonical	3	1739	junction_2	34.5	39	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7053	False	NA	NA	False	NA	NA	NA	112611310	112615579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_112611519_112613271_112613467_112614258
49509	chr17	+	2652	21	NNC	ENSMUSG00000035842.11	novel	4149	27	NA	NA	2617	51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	55.3935691213339	1	93	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGGCAAAAGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	66433224	66458435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66433322_66442802_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457409_66457568_66457724_66457797
49510	chrX	-	1720	3	ISM	ENSMUSG00000036932.15	ENSMUST00000156795.2	1025	6	84	2151	84	-2151	intron_retention	FALSE	canonical	3	1158	junction_2	95	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTATCTGTAAATTCAAG	NA	False	NA	NA	False	NA	NA	NA	47571689	47565972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_47566702_47569001_47569145_47570841
49511	chrX	-	2226	10	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	19	1000	combination_of_known_junctions	FALSE	canonical	3	132	junction_2	56.9368287590361	24	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATATATTCTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	36373956	36358328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
49512	chr10	+	1305	1	ISM	ENSMUSG00000054027.9	ENSMUST00000099396.3	5952	14	56371	1709	10273	-1709	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTCCTCCTAAGATAG	NA	False	NA	NA	False	NA	NA	NA	86671239	86672544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_86671200_86672500
49513	chr10	+	1598	1	ISM	ENSMUSG00000054027.9	ENSMUST00000099396.3	5952	14	57779	8	11681	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	41	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTGGTATGTGTGTTAG	NA	False	NA	NA	False	NA	NA	NA	86672647	86674245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_86672600_86674200
49514	chr10	+	1791	13	NNC	ENSMUSG00000004207.15	novel	2646	14	NA	NA	35	-680	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	472.949103146064	1	76	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGGGCATCAGCTCCCC	7025	False	NA	NA	False	NA	NA	NA	60113484	60137693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60129099_60129259_60130317_60130511_60130744_60130889_60131725_60131760_60134935_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136562_60136661_60137472
49516	chr3	+	1397	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	58	0	58	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	1118	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	NA	False	NA	NA	NA	142470863	142489367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
49518	chr13	+	2221	3	FSM	ENSMUSG00000021598.10	ENSMUST00000221893.2	815	3	-34	-1372	-11	-165	multi-exon	FALSE	canonical	3	811	junction_1	7	8	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGATCACCCACCGTCCT	5	True	NA	NA	False	NA	NA	NA	69957998	69963786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_69958172_69959725_69959810_69961822
49519	chr11	-	1036	4	ISM	ENSMUSG00000020460.16	ENSMUST00000150739.2	928	5	35	-48	13	-5	intron_retention	FALSE	canonical	3	7984	junction_3	3511.54859792023	53	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTACTTAGTATTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	29497847	29495850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_29496030_29496290_29496423_29496702_29497261_29497680
49521	chr2	-	927	4	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-18	-946	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6005.50354998554	59	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACAAACTTGATTCCT	3718	False	NA	NA	False	NA	NA	NA	154734769	154714283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154730136_154730281_154734609
49522	chr13	-	2334	12	NNC	ENSMUSG00000021377.16	novel	2556	11	NA	NA	-3	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	610.722820628445	5	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATGTTTTAAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	47259669	47238270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_47238661_47238701_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259142_47259647
49523	chr2	-	2092	16	NNC	ENSMUSG00000009566.13	novel	2273	15	NA	NA	10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	96.9580436179599	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGACTCCTATTCTCCT	NA	False	NA	NA	False	NA	NA	NA	32584187	32572627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32573171_32573334_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
49524	chr15	-	572	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	129	1042	2	309	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	8	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTGGATTACGGAAAGAA	160	False	NA	NA	False	NA	NA	NA	98832317	98830347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
49526	chr2	-	345	1	NIC	ENSMUSG00000086453.8	novel	490	5	NA	NA	9974	-5037	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTGGGGCCTTCTCGGC	7366	False	NA	NA	False	NA	NA	NA	164601565	164601220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164601200_164601600
49527	chr13	-	1432	2	Intergenic	novelGene_1507	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTTTCTCTCTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	97330620	97329076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_97329815_97329926
49528	chr11	+	1810	9	NNC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	313.345655786066	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	NA	False	NA	NA	NA	76836603	76878205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_76836720_76840773_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76859428_76859547_76862734_76862805_76877301
49530	chr7	+	1056	8	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	337.565594532744	9	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCTCACAGCAGCCCCC	NA	False	NA	NA	False	NA	NA	NA	43896210	43900568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43896233_43896661_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
49531	chr8	-	1606	5	NNC	ENSMUSG00000025317.8	novel	1249	7	NA	NA	3534	712	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	39.3660704160321	131	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	NA	NA	NA	122650679	122642152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_122643247_122644726_122644883_122647821_122647941_122650293_122650357_122650505
49534	chr5	+	1535	7	NNC	ENSMUSG00000029304.15	novel	1456	7	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2869.92673638583	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGTGAATAAATCTTGT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583115_104584137_104584309_104584402_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
49535	chr5	-	1292	8	NNC	ENSMUSG00000015806.13	novel	1380	7	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	357.385289145985	26	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	NA	False	NA	NA	NA	45607576	45591394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_45591675_45591760_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
49536	chrX	-	1249	12	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	canonical	3	93	junction_4	566.604457774776	78	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGATGACCCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	72974408	72965749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971446_72971543_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
49539	chr18	-	2053	1	Antisense	novelGene_ENSMUSG00000024603.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGAGGAGCCAACGCCCG	NA	False	NA	NA	False	NA	NA	NA	60661349	60659296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_60659300_60661300
49540	chr5	-	2352	17	NNC	ENSMUSG00000029472.14	novel	2760	17	NA	NA	63	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	564.08332717782	1	129	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATCAGTTTGTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	122959270	122925800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959039
49542	chr2	+	3089	23	NIC	ENSMUSG00000042359.19	novel	3853	25	NA	NA	159	-7	combination_of_known_splicesites	FALSE	canonical	3	13	junction_9	9.48552616419196	1	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTATGTTTCTTATAGC	NA	False	NA	NA	False	NA	NA	NA	76329599	76426382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76395127_76395294_76398452_76398587_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
49543	chr18	-	3108	5	FSM	ENSMUSG00000040446.5	ENSMUST00000234403.2	2950	5	-170	12	-24	-12	multi-exon	FALSE	canonical	3	215	junction_1	46.5886252211846	1	128	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCAAAGCCTGTATTGTC	NA	False	NA	NA	False	NA	NA	NA	24663285	24638495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24640067_24640161_24641149_24641226_24641334_24642849_24642980_24662972
49545	chr13	+	2470	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	116	271	87	0	multi-exon	FALSE	canonical	0	0	junction_10	57.0470300398157	1	86	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	84370534	84443989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
49546	chr16	-	2216	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	-24	-2	-24	0	multi-exon	FALSE	canonical	3	20	junction_3	123.764112551077	165	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTTGTTGGTCGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	92196989	92188840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
49547	chr10	+	1039	8	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1422.60773775142	17	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2098	False	NA	NA	False	NA	NA	NA	61484376	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502738_61509597
49548	chr13	-	1561	8	NIC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	44	-31	intron_retention	FALSE	canonical	3	316	junction_6	18.9413703359625	351	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTACTGCATTATTAACTA	NA	False	NA	NA	False	NA	NA	NA	100912363	100896212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100908212_100909233_100909290_100912194
49549	chr7	-	2624	6	NNC	ENSMUSG00000092574.5	novel	1179	5	NA	NA	20	1275	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	15.2367975637927	74	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAACTATTGTGTCACTA	NA	False	NA	NA	False	NA	NA	NA	8096020	8088049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8095258_8095449_8095759
49550	chr5	+	2681	8	NIC	ENSMUSG00000033540.19	novel	3022	13	NA	NA	-2162	2	intron_retention	FALSE	canonical	2	36	junction_5	9.19183310979738	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACCTGGCCTCCCAAGTC	NA	False	NA	NA	False	NA	NA	NA	108828308	108832420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108828364_108828436_108828617_108828726_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
49551	chr6	+	1360	10	NNC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	98.0303555909288	95	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9496	False	NA	NA	False	NA	NA	NA	83772201	83779538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83772357_83773888_83774075_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
49553	chr5	-	1241	1	Genic_Genomic	ENSMUSG00000033970.16	novel	NA	NA	NA	NA	-2335	1110	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTCTTCTGTAAATC	NA	False	NA	NA	False	NA	NA	NA	151570562	151569321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_151569300_151570600
49555	chr10	-	3240	14	NNC	ENSMUSG00000038446.9	novel	3534	15	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	57.0042041426843	13	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	NA	False	NA	NA	NA	40759119	40707616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40720993_40723940_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
49556	chr7	-	3279	2	Genic_Genomic	ENSMUSG00000109205.2	novel	227	1	NA	NA	-3843	2790	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATTAATATAAATTTAAAG	NA	False	NA	NA	False	NA	NA	NA	29467931	29461071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_29464104_29467684
49557	chr4	+	4135	5	ISM	ENSMUSG00000038007.15	ENSMUST00000045224.14	4216	6	11641	1	11623	-1	3prime_fragment	FALSE	canonical	2	7	junction_3	2.29128784747792	35	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAAATTATTTCTTT	7707	False	NA	NA	False	NA	NA	NA	86804273	86839111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_86804510_86805260_86805403_86818718_86818857_86829852_86829991_86835630
49558	chr7	+	2490	8	FSM	ENSMUSG00000056144.15	ENSMUST00000060315.12	2590	8	105	-5	71	5	multi-exon	TRUE	canonical	1	1	junction_3	5.3642809587196	80	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATCTGTTCATTTATAT	NA	False	NA	NA	False	NA	NA	NA	103893770	103911446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_103893814_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
49559	chr10	-	2971	21	FSM	ENSMUSG00000020115.4	ENSMUST00000020316.4	3024	21	47	6	1	-1	multi-exon	FALSE	canonical	3	107	junction_12	17.7	215	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAAGGCTTGTGTGCTTT	3925	False	NA	NA	False	NA	NA	NA	121422645	121382365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
49560	chr9	-	4561	6	NIC	ENSMUSG00000045519.16	novel	4751	7	NA	NA	70	-37	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	13.847743498491	10	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTTTTATTAAACTAAT	NA	False	NA	NA	False	NA	NA	NA	20296403	20256468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_20260456_20261827_20261909_20263133_20263261_20264048_20264138_20265359_20265546_20296312
49561	chr11	+	1968	10	NIC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	230	-1	intron_retention	FALSE	canonical	3	585	junction_7	54.9949492630409	39	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACCCCCCGGTCTCTGA	1460	False	NA	NA	False	NA	NA	NA	101010993	101017244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015949_101016028_101016191_101016857
49562	chr5	-	2188	1	NIC	ENSMUSG00000105254.2	novel	684	3	NA	NA	641	-14076	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCTCTAATCAACCAAAT	NA	False	NA	NA	False	NA	NA	NA	23551631	23549443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_23549400_23551600
49563	chrX	-	716	2	Genic_Genomic	ENSMUSG00000082926.4	novel	750	1	NA	NA	-41	40	multi-exon	FALSE	canonical	0	0	junction_1	0	20	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTTTCATTAATAGT	NA	False	NA	NA	False	NA	NA	NA	68649892	68649061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_68649598_68649712
49564	chr6	-	1993	11	FSM	ENSMUSG00000030214.8	ENSMUST00000032336.7	2010	11	15	2	15	-2	multi-exon	FALSE	canonical	3	53	junction_2	4.98497743224581	118	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGGTCCTGCGTTTA	NA	False	NA	NA	False	NA	NA	NA	136638911	136589069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_136589347_136589734_136589842_136590789_136590976_136593924_136594066_136594199_136594401_136611428_136611574_136612489_136612631_136617114_136617254_136618128_136618213_136628728_136628949_136638559
49565	chr6	+	1805	4	FSM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	-43	27	-43	-27	multi-exon	FALSE	canonical	3	94	junction_1	1.24721912892465	402	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAAGATTGGTTTAGTT	6161	False	NA	NA	False	NA	NA	NA	48514505	48518708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48514789_48516157_48516206_48516973_48517101_48517361
49566	chrX	-	1547	2	Genic_Genomic	ENSMUSG00000080069.3	novel	1023	1	NA	NA	-9169	400	multi-exon	FALSE	canonical	3	24	junction_1	0	116	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCAAGGCTTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	85398620	85388028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_85389457_85398501
49568	chr3	+	1502	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	6	6	6	-6	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	2682	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTAGTCTGCTTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	144276192	144303435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
49570	chr11	-	1208	5	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9293.80711818359	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6392	False	NA	NA	False	NA	NA	NA	69812091	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808646_69809976_69810163_69811988
49571	chr1	+	2454	7	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	26	-7	intron_retention	FALSE	non_canonical	0	0	junction_3	93.5457404458138	2	81	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTCACTTTTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	165957832	165994071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165958174_165974207_165974363_165980136_165980358_165985081_165985223_165991341_165991446_165992148_165992285_165992715
49572	chr1	-	1805	13	NIC	ENSMUSG00000057363.13	novel	4620	15	NA	NA	3	-19	combination_of_known_splicesites	FALSE	canonical	1	1	junction_12	75.0256900445885	10	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACATGGGTTTTGAGCTA	NA	False	NA	NA	False	NA	NA	NA	43866919	43788690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43836404_43836466_43844512_43844557_43844785_43844835_43866774
49573	chr5	+	2229	8	NNC	ENSMUSG00000029131.15	novel	2918	10	NA	NA	-2	-106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	834.74605694896	1	94	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCCAGCTCTCTTGTGG	4628	False	NA	NA	False	NA	NA	NA	29941019	29991370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955937_29956046_29957394_29957462_29970511_29970646_29971322_29971394_29986127_29986449_29990028
49574	chr4	+	698	2	Genic_Genomic	ENSMUSG00000070583.2	novel	1380	1	NA	NA	-119	495	multi-exon	FALSE	canonical	2	4	junction_1	0	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACCTTACTCCCCAGTT	NA	False	NA	NA	False	NA	NA	NA	147953316	147955310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_147953605_147954900
49576	chr14	-	1326	6	NNC	ENSMUSG00000060373.16	novel	1683	9	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1553.4813033957	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTGTCTCCAAAATAA	8735	False	NA	NA	False	NA	NA	NA	52341475	52312256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315101_52321526_52321849_52341345
49577	chr2	-	1583	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-5	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACATCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	152185913	152179350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179815_152180209_152180608_152181634_152181928_152184956_152185248_152185776
49578	chr2	+	2419	4	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	9	0	intron_retention	FALSE	canonical	3	497	junction_1	28.7672653471886	20	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	122	False	NA	NA	False	NA	NA	NA	164404507	164410430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164404725_164405227_164405372_164405976_164407859_164410254
49579	chr10	-	1700	2	FSM	ENSMUSG00000049872.9	ENSMUST00000069125.8	5323	2	22	3601	22	-3601	multi-exon	FALSE	canonical	3	31	junction_1	0	109	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTTTTCTGGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	33972493	33967411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_33968512_33971893
49580	chr6	+	2834	3	Intergenic	novelGene_4141	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	4.5	65	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTACGTGTATCTC	NA	False	NA	NA	False	NA	NA	NA	37419454	37425524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_37419969_37422999_37423146_37423350
49581	chr4	+	2609	21	NNC	ENSMUSG00000028576.13	novel	549	4	NA	NA	-11224	156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	64.6020704002588	2	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAGCACCAGGCATACAT	NA	False	NA	NA	False	NA	NA	NA	94491503	94581622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_94492167_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579962_94580018_94581187_94581351_94581532
49582	chr11	-	1432	11	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	-34	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	546.443958700249	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACATTTTCCTGTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	119190878	119179204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184393_119184524_119184717_119184860_119185150_119185232_119185396_119185533_119186847_119186960_119188630_119188704_119190653
49584	chr12	-	1172	9	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3394.20067909957	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATAAACTAGGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	111638731	111635823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636386_111636661_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638231_111638331_111638408_111638663
49585	chr16	+	2833	4	FSM	ENSMUSG00000033031.14	ENSMUST00000149004.2	1779	4	-1512	458	1030	-400	multi-exon	FALSE	canonical	3	218	junction_2	19.94993734326	5	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTTTGTTCTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	48834687	48839614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_48836421_48836641_48836725_48837714_48837855_48838737
49586	chr1	-	1749	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182819.8	816	3	-935	2	-40	0	multi-exon	FALSE	canonical	3	538	junction_1	75	99	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	NA	False	NA	NA	NA	10014383	10012249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_10012381_10012547_10012617_10012834
49588	chr8	+	2398	5	FSM	ENSMUSG00000044676.11	ENSMUST00000058804.10	3180	5	-36	818	-18	-818	multi-exon	FALSE	canonical	1	4	junction_2	8.66025403784439	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACTAAAAAAACAAAAAA	917	False	NA	NA	False	NA	NA	NA	110806359	110816824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_110806637_110809309_110809375_110810238_110810416_110810975_110811084_110815053
49589	chr5	+	918	1	NIC	ENSMUSG00000036928.15	novel	989	7	NA	NA	8697	-236	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTCCTTCAATTTTTAG	6964	False	NA	NA	False	NA	NA	NA	138287514	138288432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_138287500_138288400
49593	chr12	-	1491	9	NNC	ENSMUSG00000020650.16	novel	6155	8	NA	NA	14	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	132.096496452404	4	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGGAGTTTTTATTCTC	NA	False	NA	NA	False	NA	NA	NA	31684620	31645352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31645707_31645969_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
49594	chr8	+	1831	12	ISM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	8958	1752	8873	157	3prime_fragment	FALSE	canonical	3	530	junction_2	66.4064618980576	1	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTATTTTTAGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	69255538	69280310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
49596	chr10	-	2747	12	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	24	-612	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	22.0262803213204	21	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAAAAATCCCCATTTT	NA	False	NA	NA	False	NA	NA	NA	87982771	87927905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982357_87982511_87982713
49597	chr7	-	2587	23	Antisense	novelGene_ENSMUSG00000030534.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	193	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCCCGGAAGTCCGGGTC	NA	False	NA	NA	False	NA	NA	NA	79941328	79919387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_79919825_79923973_79924052_79924365_79924433_79925791_79925844_79926145_79926212_79929717_79929764_79932230_79932325_79933172_79933279_79933725_79933825_79934029_79934109_79934288_79934362_79934763_79934851_79934995_79935089_79935303_79935377_79935579_79935643_79935754_79935813_79936854_79936897_79937519_79937656_79938144_79938221_79939728_79939830_79940013_79940089_79940192_79940311_79940860
49598	chr9	+	2992	7	NNC	ENSMUSG00000032202.12	novel	3168	7	NA	NA	18732	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5.21749194749951	19	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGGTCCAGTATATCAA	757	False	NA	NA	False	NA	NA	NA	72970997	73004891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72971042_72971566_72971674_72982674_72982850_72989683_72989770_72992212_72992317_72994358_72994483_73002539
49599	chr7	-	484	2	ISM	ENSMUSG00000030929.18	ENSMUST00000063902.14	1241	10	21355	-9	15340	9	3prime_fragment	FALSE	canonical	2	2	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATTCATTTGAAAACAA	NA	False	NA	NA	False	NA	NA	NA	119371835	119371151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_119371568_119371767
49600	chr15	-	981	8	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	801	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	10564.6785322506	2	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACACTGGTTTTCCCAC	5142	False	NA	NA	False	NA	NA	NA	79965983	79961999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964770_79965197_79965233_79965815
49603	chr14	+	2152	1	ISM	ENSMUSG00000034522.11	ENSMUST00000066994.7	4229	10	37935	168	931	-168	mono-exon	FALSE	NA	NA	NA	NA	NA	29	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCGCTTCTCCCCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	65634059	65636211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_65634100_65636200
49604	chr8	-	1733	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	63.6958163837578	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	NA	NA	NA	106578636	106571304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576402_106578502
49605	chr1	+	1818	13	NNC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	3	-4	intron_retention	FALSE	canonical	1	1	junction_1	79.2920060423636	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGAGCCAGCTTGGACTC	NA	False	NA	NA	False	NA	NA	NA	75412630	75419813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75412957_75413381_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
49606	chr11	-	818	7	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7265.74271648964	57	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113075	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102732_33109954_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
49607	chr15	-	1367	3	Antisense	novelGene_ENSMUSG00000042406.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAATGGCGGCGGCACG	NA	False	NA	NA	False	NA	NA	NA	80141742	80139708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80139887_80140407_80140713_80140858
49608	chr7	+	419	4	NNC	ENSMUSG00000035674.14	novel	351	4	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1440.3567459333	153	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATCTTTTCTTTCGTGGGT	265	False	NA	NA	False	NA	NA	NA	3620381	3623161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3620407_3620615_3620691_3622428_3622507_3622920
49609	chr15	-	2794	18	NIC	ENSMUSG00000062906.13	novel	2412	20	NA	NA	1	2	intron_retention	FALSE	canonical	3	26	junction_3	4.88624933112828	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCTGTCTCCGTTACTG	NA	False	NA	NA	False	NA	NA	NA	89012881	89007507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
49610	chr6	-	4960	11	Fusion	ENSMUSG00000001158.14_ENSMUSG00000001156.10	novel	912	7	NA	NA	-8	-10	intron_retention	FALSE	canonical	3	6	junction_5	964.534607984597	50	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTAAACATTGGTCTTCC	7669	False	NA	NA	False	NA	NA	NA	86661481	86624033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_-_86628062_86628423_86628584_86630066_86630182_86640052_86640083_86645519_86645617_86652464_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
49613	chr10	-	1252	7	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1639.71200892786	6	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959886	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952971_90953886_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
49616	chr15	-	1927	7	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-9	-583	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	98.93712930723	25	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTAGAAGGCCCTTTTGAA	1354	False	NA	NA	False	NA	NA	NA	82223017	82215517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
49617	chr10	-	1612	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	40	8	12	0	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	3590	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTCTGTGCAGTAGCA	6901	False	NA	NA	False	NA	NA	NA	75757411	75732610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
49618	chr17	-	1762	8	NNC	ENSMUSG00000023832.15	novel	2250	9	NA	NA	7	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	380.558772848343	16	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCTTACATTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	13179627	13161936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13162740_13165177_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
49620	chr19	+	2152	1	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-666	776	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTCTATCAATTTTGCA	9987	False	NA	NA	False	NA	NA	NA	41927776	41929928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41927800_41929900
49621	chr12	-	2008	2	ISM	ENSMUSG00000056458.17	ENSMUST00000084974.11	1132	7	31039	3	31036	-3	3prime_fragment	FALSE	canonical	3	231	junction_1	0	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	110776325	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110774556_110774638
49622	chr18	+	2148	3	NIC	ENSMUSG00000046668.10	novel	1169	2	NA	NA	-127	-8	combination_of_known_junctions	FALSE	canonical	3	329	junction_2	30	140	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGATAACACTCCTGG	NA	False	NA	NA	False	NA	NA	NA	35963239	35994733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35963293_35991445_35992510_35993702
49623	chr6	-	4047	8	NIC	ENSMUSG00000040649.16	novel	1372	8	NA	NA	282	-11	intron_retention	FALSE	canonical	3	12	junction_2	60.2488038665245	32	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGGGAATGAAGTTGGAG	9588	False	NA	NA	False	NA	NA	NA	122463116	122424267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122424419_122426786_122429723_122433476_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122463049
49624	chr9	+	2964	8	NNC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	-4	-10	intron_retention	FALSE	non_canonical	0	0	junction_2	311.638461381526	1	130	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGGTGCTTTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	20799567	20803464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20799614_20799702_20800401_20800606_20800736_20800929_20800981_20801066_20802012_20802200_20802662_20802746_20803044_20803127
49625	chr8	-	1400	6	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-26	-242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	587.393088144558	2	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTGTCTCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	85573485	85568720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569397_85571231_85571413_85571499_85571595_85572490_85572695_85572885_85572981_85573336
49626	chr16	+	1965	2	ISM	ENSMUSG00000014075.16	ENSMUST00000131204.2	2158	3	5500	6	5500	-2	3prime_fragment	FALSE	canonical	3	258	junction_1	0	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTATGTCATGAATAGTT	NA	False	NA	NA	False	NA	NA	NA	32244112	32247911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_32245740_32247573
49627	chr14	-	1736	2	ISM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	86	3	86	-3	intron_retention	FALSE	canonical	3	1671	junction_1	0	12	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCACGGTCCTCTGGCA	8764	False	NA	NA	False	NA	NA	NA	20443465	20441297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_20441529_20441960
49629	chr7	-	1344	8	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	-8	208	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	409.120460280842	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATTTTTCTCTTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	46569700	46539125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
49630	chrX	+	953	4	NNC	ENSMUSG00000051257.4	novel	1178	3	NA	NA	175	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1325.40115520631	9	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTGTTTCACGTTAAC	NA	False	NA	NA	False	NA	NA	NA	138234606	138238916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_138234961_138235008_138235157_138237570_138237800_138238694
49632	chr15	+	1173	4	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	630.303630535845	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141264_80141502
49633	chr12	+	2021	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTTCATGCGTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	86516918	86568402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565880_86567737
49634	chr9	+	1512	3	FSM	ENSMUSG00000084786.10	ENSMUST00000161595.8	642	3	14	-884	13	13	multi-exon	FALSE	canonical	3	1048	junction_1	4.5	18	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTGAGAGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	20556143	20558086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20556190_20556488_20556786_20556917
49637	chr11	-	1834	5	NNC	ENSMUSG00000057594.13	novel	588	5	NA	NA	8	541	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	74.6408065336917	4	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGGTATATGAGGTCCCA	NA	False	NA	NA	False	NA	NA	NA	120358271	120355150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120356648_120356809_120356926_120357479_120357559_120358007_120358065_120358186
49638	chrX	+	1146	6	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-16	0	intron_retention	FALSE	canonical	3	147	junction_2	607.911835713042	60	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5416	False	NA	NA	False	NA	NA	NA	72830617	72834432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964
49640	chr6	-	1388	8	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	106	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	400.102129819018	1	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAAGACTGGCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	33037046	32769165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026266_33026356_33036934
49642	chr15	-	3275	5	ISM	ENSMUSG00000079020.10	ENSMUST00000132607.2	2457	7	8929	-1266	1362	-1	3prime_fragment	FALSE	canonical	3	242	junction_4	30.7652401258303	97	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACGCTGTGTTTATGTC	NA	False	NA	NA	False	NA	NA	NA	73459449	73452139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_73453980_73456186_73456399_73457136_73457237_73457867_73458935_73459393
49643	chr9	+	1703	13	NIC	ENSMUSG00000041506.16	novel	1611	14	NA	NA	-2	1	intron_retention	FALSE	canonical	3	1203	junction_9	79.85177240084	871	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTTCTCCCTTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	106354514	106362616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360411_106360755_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
49645	chr7	-	2057	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	50	0	50	0	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	307	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	26866177	26858082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
49646	chr14	+	2856	2	FSM	ENSMUSG00000037536.15	ENSMUST00000043112.9	2937	2	80	1	7	-1	multi-exon	FALSE	canonical	3	19	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATGAGGTCTGGTCTTA	NA	False	NA	NA	False	NA	NA	NA	47710097	47769410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47710175_47766631
49647	chr15	+	2393	13	Antisense	novelGene_ENSMUSG00000036606.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	43	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGAGGAGGGGCCGGAGC	NA	False	NA	NA	False	NA	NA	NA	89047480	89064960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89047576_89048216_89048316_89048414_89048519_89048615_89048738_89049449_89049600_89049903_89050033_89050108_89050208_89050566_89050695_89050783_89050972_89051144_89052233_89054773_89054825_89055272_89055320_89064867
49648	chr11	+	2366	5	NNC	ENSMUSG00000018599.6	novel	2522	4	NA	NA	-5	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	56.7934855419176	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAAAGGAGAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	60619263	60623754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60619394_60621108_60621262_60621455_60621619_60621741_60623534_60623626
49649	chr11	+	1254	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	-18	80	-18	-80	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAAGAAGCTATGGAAGT	4518	False	NA	NA	False	NA	NA	NA	106146961	106153866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
49650	chr9	-	1102	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	-1	0	-1	0	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	6053	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	5138	False	NA	NA	False	NA	NA	NA	20809920	20805644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
49652	chr15	+	3053	14	Antisense	novelGene_ENSMUSG00000098663.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTTGCGGAGAAACGCAGG	8650	False	NA	NA	False	NA	NA	NA	89068734	89080624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89069470_89069572_89070254_89070377_89070472_89070571_89070621_89070948_89071449_89071536_89071661_89072357_89072412_89072661_89072896_89072978_89073085_89073644_89073723_89074445_89074556_89075075_89075122_89075193_89075239_89080427
49653	chr15	-	1727	9	FSM	ENSMUSG00000022552.17	ENSMUST00000023211.16	1734	9	2	5	1	-4	multi-exon	FALSE	canonical	3	126	junction_7	14.1862609591111	349	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTGTTCTGTTC	8115	False	NA	NA	False	NA	NA	NA	76235309	76231244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
49654	chr5	-	1582	5	FSM	ENSMUSG00000025337.11	ENSMUST00000139211.5	815	5	-96	-671	-9	-3	multi-exon	FALSE	canonical	2	6	junction_4	362.983728974179	1968	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCTGGCTTGCATTTCT	NA	False	NA	NA	False	NA	NA	NA	130284342	130274574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130283984
49655	chr2	-	2531	13	NIC	ENSMUSG00000027408.8	novel	2366	14	NA	NA	-2	-9	intron_retention	FALSE	canonical	3	131	junction_7	18.1659021245849	216	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTGATACTCCTCTTGA	NA	False	NA	NA	False	NA	NA	NA	130239496	130232704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130233063_130233157_130233261_130234990_130235602_130235685_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
49656	chr8	+	2488	12	NNC	ENSMUSG00000038482.12	novel	2682	13	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.245982390463	1	132	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2167	False	NA	NA	False	NA	NA	NA	13388814	13428442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388853_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423104_13423844_13423924_13427141
49657	chr10	-	2393	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	1	0	1	0	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	148	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTCCCCTGGCTTTC	NA	False	NA	NA	False	NA	NA	NA	77351618	77322494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
49658	chr7	+	1892	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	250	2350	-80	1102	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	1	93	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAGGTATATTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	83541457	83548390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
49659	chr17	-	1400	3	NIC	ENSMUSG00000047407.18	novel	1455	3	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	26.5	152	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	NA	False	NA	NA	NA	71156777	71151205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_71152236_71153166_71153394_71156634
49660	chr10	-	1173	5	Antisense	novelGene_ENSMUSG00000019849.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTAGCCATATAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	45035082	45024183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_45024212_45026526_45026632_45029154_45029280_45031608_45031769_45034327
49661	chr15	-	1959	8	FSM	ENSMUSG00000022559.9	ENSMUST00000230513.2	1953	8	-13	7	-2	-4	multi-exon	FALSE	canonical	3	133	junction_7	19.025224930956	246	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAAAGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	76422948	76419933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116
49662	chr7	+	1941	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	0	-3	0	0	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	409	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	138448323	138484786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
49663	chr8	+	5087	12	FSM	ENSMUSG00000031642.10	ENSMUST00000034060.7	5479	12	388	4	16	-4	multi-exon	FALSE	canonical	3	41	junction_9	7.49876022810956	43	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCTAGGCCCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	61677293	61849101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_61677381_61678865_61679353_61782252_61782529_61782956_61783053_61802433_61802737_61806771_61806883_61814621_61814807_61816108_61816280_61825541_61825802_61827042_61827402_61837610_61837964_61846702
49664	chr10	-	2679	17	Antisense	novelGene_ENSMUSG00000019823.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	119	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTCCGCAGTCCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	41361065	41352357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_41352534_41354003_41354634_41354960_41355064_41355389_41355493_41355611_41355768_41356277_41356373_41357125_41357386_41357583_41357701_41357895_41358030_41358212_41358284_41358597_41358745_41359436_41359629_41359711_41359790_41360152_41360249_41360369_41360528_41360727_41360802_41360976
49665	chr11	-	1764	1	NIC	ENSMUSG00000020831.19	novel	643	4	NA	NA	-70	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	16	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAACATGGTGCTGCCAGC	NA	False	NA	NA	False	NA	NA	NA	70127800	70126036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70126000_70127800
49668	chr3	+	1924	4	NNC	ENSMUSG00000038393.15	novel	2827	8	NA	NA	84	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	237.153021392424	1	82	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATAAATGTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	96466910	96469172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96467162_96467253_96467387_96467513_96467676_96467794
49669	chr13	-	3036	7	FSM	ENSMUSG00000021636.16	ENSMUST00000022137.14	3061	7	23	2	-18	0	multi-exon	FALSE	canonical	1	3	junction_4	4.71404520791032	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTGTGCTCCTTA	NA	False	NA	NA	False	NA	NA	NA	100753456	100732466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940_100749093_100753433
49670	chr12	+	877	10	NIC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	-2	0	combination_of_known_splicesites	TRUE	canonical	3	6	junction_6	1323.58123436026	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4780	False	NA	NA	False	NA	NA	NA	71021454	71041278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71037258_71037306_71039786_71039855_71040279_71040345_71041124
49671	chr18	-	3107	15	NNC	ENSMUSG00000033032.16	novel	3444	19	NA	NA	33343	-6	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_14	9.21317822801798	37	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGAGAGGTCAGAGGGTA	NA	False	NA	NA	False	NA	NA	NA	61886339	61863337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870566_61870679_61871754_61871828_61872194_61872341_61874700_61874913_61876348_61876502_61876737_61876832_61879848_61879942_61881766_61881947_61884736_61884949_61885579_61885679_61886123
49672	chr2	+	2428	11	Antisense	novelGene_ENSMUSG00000026723.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGCAACCGCGACCGCGG	NA	False	NA	NA	False	NA	NA	NA	13514971	13549445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_13516122_13516190_13516501_13520824_13520958_13521471_13521525_13524563_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530505_13549378
49673	chr3	-	1545	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	49	0	-26	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	669	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	116301808	116282611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
49674	chr4	-	2196	6	Intergenic	novelGene_1934	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	69	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCCCGGCCCACAAGGC	NA	False	NA	NA	False	NA	NA	NA	116450941	116414909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_116415025_116426359_116427378_116428066_116428194_116430598_116430736_116431544_116431758_116450355
49675	chr11	+	1353	3	NNC	ENSMUSG00000020397.16	novel	2547	3	NA	NA	-4	65	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	268	18	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGAAATTATAAAATGTT	NA	False	NA	NA	False	NA	NA	NA	46327793	46332419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_46328019_46330704_46330803_46331389
49676	chr11	-	2038	7	NIC	ENSMUSG00000018727.20	novel	1213	8	NA	NA	-1	1	intron_retention	FALSE	canonical	3	41	junction_6	59.5392027715073	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCATTGATTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	113600844	113588996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113594193_113597242_113597396_113599629_113599681_113600647
49677	chr15	+	2033	12	NNC	ENSMUSG00000022556.12	novel	2018	12	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	109.959722152558	4	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATATATATA	7137	False	NA	NA	False	NA	NA	NA	76361637	76385176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382896_76384147_76384254_76384466_76384537_76384616
49679	chr13	-	1637	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	2	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34312384_34312455_34312515_34312854_34312966_34313228_34313338_34314159
49680	chr9	-	2833	2	ISM	ENSMUSG00000045414.8	ENSMUST00000113028.2	3950	3	13635	5	13635	-5	3prime_fragment	FALSE	canonical	3	141	junction_1	0	110	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATACTTTGGCTACTCTGT	NA	False	NA	NA	False	NA	NA	NA	94406499	94399921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_94402700_94406444
49681	chr2	-	2635	5	NIC	ENSMUSG00000038671.16	novel	1087	7	NA	NA	8	-32	intron_retention	FALSE	canonical	3	271	junction_4	23.5159520326097	2	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTCTAAGACAAACTTT	6168	False	NA	NA	False	NA	NA	NA	181007105	181001139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181001355_181001431_181003266_181005806_181006192_181006397_181006505_181007011
49682	chrX	-	3486	7	NNC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	13.0724477007517	79	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTGAGAGTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	135939030	135901802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930857_135933099_135933250_135938914
49683	chr9	+	1660	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	187	11	3	4	multi-exon	FALSE	canonical	3	1280	junction_13	396.993628196225	1	76	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAACTGATCTTTGAGT	1182	False	NA	NA	False	NA	NA	NA	108437671	108442772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
49684	chr11	-	2379	3	NNC	ENSMUSG00000081887.2	novel	1414	2	NA	NA	-75131	1547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	44	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGATTGACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30599585	30521243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_30523212_30582207_30582334_30599300
49685	chr12	+	1488	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110351.8	1498	8	5	5	3	1	multi-exon	FALSE	canonical	3	289	junction_7	580.121838012305	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAACTGCTTTTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	80992310	80997272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996490
49687	chr3	-	2352	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134273	1899	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	46	118	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	153065693	152909103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_152911229_152912254_152912363_153065574
49688	chr18	-	2699	13	NNC	ENSMUSG00000024376.8	novel	540	6	NA	NA	323	31774	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	53.3944961791215	15	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATTCTCTTTTGTTCTC	NA	False	NA	NA	False	NA	NA	NA	34139649	33978233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_33979333_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037
49690	chr1	+	1510	1	ISM	ENSMUSG00000025964.16	ENSMUST00000087374.10	6426	26	148703	169	9575	-169	mono-exon	FALSE	NA	NA	NA	NA	NA	17	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTTTTGTGCTCTGATT	NA	False	NA	NA	False	NA	NA	NA	63633756	63635266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_63633800_63635300
49691	chr7	-	2528	5	FSM	ENSMUSG00000030443.17	ENSMUST00000062765.14	2550	5	15	7	8	-7	multi-exon	FALSE	canonical	3	15	junction_1	5.61248608016091	103	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGAAGAGTTGATTATTT	NA	False	NA	NA	False	NA	NA	NA	6334269	6318665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_6320779_6326645_6326742_6328451_6328579_6332253_6332316_6334139
49692	chr4	+	1955	19	NNC	ENSMUSG00000028576.13	novel	2139	20	NA	NA	3507	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	44.8255879307046	2	44	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTTCCTGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	94506234	94581470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543133_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
49693	chr1	+	1479	10	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-40	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	221.497930765354	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCTGATCTGATTGTTCA	5573	False	NA	NA	False	NA	NA	NA	34478891	34488391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34487706_34487947_34488029
49695	chr9	+	1909	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	100	15	72	-15	multi-exon	FALSE	canonical	3	320	junction_5	26.0666879795309	213	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGTTATAATTGAACGT	1060	False	NA	NA	False	NA	NA	NA	55949240	55966346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
49696	chr5	-	1851	7	FSM	ENSMUSG00000029209.16	ENSMUST00000031117.13	1894	7	37	6	-10	-6	multi-exon	FALSE	canonical	3	104	junction_4	11.5998084275369	378	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATAATTATCTCATTT	NA	False	NA	NA	False	NA	NA	NA	69749646	69732349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_69733297_69735320_69735496_69736850_69737036_69742316_69742500_69743807_69743910_69747003_69747167_69749550
49697	chr7	-	2907	17	FSM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	4	2	4	0	multi-exon	FALSE	canonical	3	340	junction_7	190.956545694956	1	140	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	144024478	143989471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
49698	chr6	-	1358	4	NIC	ENSMUSG00000004268.12	novel	917	5	NA	NA	-14	-1	intron_retention	FALSE	canonical	3	1245	junction_3	32.2524762184584	456	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTTTTTCAGACCTGA	NA	False	NA	NA	False	NA	NA	NA	124689118	124681345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124682180_124682477_124682620_124682703_124682806_124688838
49699	chr16	+	1610	4	NIC	ENSMUSG00000060636.15	novel	510	5	NA	NA	2	0	intron_retention	FALSE	canonical	3	3184	junction_1	3032.97609618012	44	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	NA	False	NA	NA	NA	32876870	32880545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32876926_32877505_32877549_32877759_32879194_32880467
49700	chr16	-	1510	5	NNC	ENSMUSG00000002844.10	novel	2966	4	NA	NA	12	-1375	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	530.961627615405	1	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTGTCTGACTTTTCC	NA	False	NA	NA	False	NA	NA	NA	38273032	38265766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38266467_38267609_38267971_38270490_38270696_38270743_38270846_38272890
49701	chr17	-	1179	2	Antisense	novelGene_ENSMUSG00000061062.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGCCCGCCCCATTAGAT	NA	False	NA	NA	False	NA	NA	NA	78800946	78798979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_78799877_78800664
49702	chr1	-	2343	7	NIC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	27.6008252694653	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTGTATATGTGTGT	7895	False	NA	NA	False	NA	NA	NA	179373815	179355619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179373386
49703	chr5	+	1803	3	Intergenic	novelGene_832	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	11	258	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGTCTAATTTGAGCATG	653	False	NA	NA	False	NA	NA	NA	115341972	115344397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_115342190_115342747_115344087_115344150
49704	chr17	+	886	3	NNC	ENSMUSG00000071172.14	novel	518	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	710	53	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGCCTGTTTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	29251646	29261084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255269_29260366
49706	chr6	+	2847	5	NNC	ENSMUSG00000036402.14	novel	4248	5	NA	NA	-3	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	135.739640488694	286	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTTTGCCCAATAAAT	NA	False	NA	NA	False	NA	NA	NA	66873411	66998301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447_66996003_66997286
49707	chr4	-	3272	3	ISM	ENSMUSG00000061894.16	ENSMUST00000084276.12	3962	4	-99	1073	-99	763	intron_retention	FALSE	canonical	3	8	junction_1	5.5	16	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTGACCATGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	128483854	128478404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_128480638_128481808_128482238_128483244
49708	chr15	+	1293	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-26	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	689	2	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGTGAAAGTACCTATGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140617_80140834
49711	chr7	+	1382	11	NNC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	-8	162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	194.011236787976	42	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATCTCTCTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	139717589	139730522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139717761_139718231_139718297_139720105_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
49712	chr5	-	528	1	NIC	ENSMUSG00000051391.10	novel	1610	3	NA	NA	0	-3262	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTTGTGCCCCACTTCC	NA	False	NA	NA	False	NA	NA	NA	135963404	135962876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_135962900_135963400
49713	chr14	-	1834	2	Intergenic	novelGene_573	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	745	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATCCTTTTTTCGAGAC	9028	False	NA	NA	False	NA	NA	NA	52408278	52406222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_52406877_52407098
49714	chr17	+	2003	8	ISM	ENSMUSG00000090083.12	ENSMUST00000234362.2	1780	9	-57	5027	21	693	5prime_fragment	FALSE	canonical	2	15	junction_3	91.6027359006804	2	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTGACAACCATAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	29833884	29855596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29834053_29840482_29840612_29845479_29845817_29845920_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791
49715	chr17	+	1113	7	FSM	ENSMUSG00000034729.17	ENSMUST00000120737.8	1017	7	-96	0	-96	0	multi-exon	FALSE	canonical	3	977	junction_2	314.646892034018	2216	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTGGTTTTGTTTA	7041	False	NA	NA	False	NA	NA	NA	47679715	47689604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47679880_47683351_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
49716	chr14	+	2162	7	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-14070	-336	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8.13770374382247	129	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	40986691	41010436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40987404_40998230_40998303_41000807_41000918_41001646_41001810_41002809_41002942_41003619_41003802_41009645
49719	chr17	+	2223	3	NIC	ENSMUSG00000073423.11	novel	1544	5	NA	NA	-2	-7	intron_retention	FALSE	canonical	3	400	junction_2	25	14	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATGACTGGTACCTA	4926	False	NA	NA	False	NA	NA	NA	33848072	33850683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_33849054_33849340_33849449_33849549
49720	chr6	+	3359	1	Genic_Genomic	ENSMUSG00000057230.15	novel	NA	NA	NA	NA	4859	4	mono-exon	FALSE	NA	NA	NA	NA	NA	27	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGTTGTGTGTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	86976850	86980209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_86976800_86980200
49721	chrX	+	2263	7	Genic_Genomic	ENSMUSG00000033343.2	novel	948	1	NA	NA	-4059	463	multi-exon	FALSE	canonical	2	4	junction_1	3.07769755210323	68	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCGCCGGGCATCTGTT	NA	False	NA	NA	False	NA	NA	NA	71261563	71267033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_71261614_71262220_71262501_71263739_71263837_71264233_71264433_71264562_71264653_71264786_71264860_71265559
49723	chr11	+	1272	4	NNC	ENSMUSG00000020392.9	novel	637	4	NA	NA	24	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	504.667107001129	73	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTAGGTTCAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	51858511	51868159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_51858785_51860970_51861071_51866726_51867028_51867561
49724	chr1	-	1933	11	NIC	ENSMUSG00000054387.14	novel	2010	11	NA	NA	0	53	combination_of_known_junctions	FALSE	canonical	3	61	junction_6	112.364629666101	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTACCCTGGTGTTATGTA	NA	False	NA	NA	False	NA	NA	NA	132953092	132919038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932431_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
49725	chr12	-	1369	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3563.33168451627	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGTTGCTGACACTGAA	NA	False	NA	NA	False	NA	NA	NA	111638731	111635840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636458_111636610_111636720_111637306_111637469_111637648_111637782_111637858_111638014_111638199_111638408_111638663
49726	chr13	-	3492	4	FSM	ENSMUSG00000050954.16	ENSMUST00000110110.9	2196	4	-55	-1241	-55	-554	multi-exon	FALSE	canonical	0	0	junction_1	7.40870359029762	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTTCTCTACTCTTTTC	2255	False	NA	NA	False	NA	NA	NA	48660470	48641688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_48644870_48651798_48651895_48652255_48652383_48660382
49727	chr4	+	1371	11	NIC	ENSMUSG00000028252.21	novel	1406	12	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_2	140.523627906484	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	-1	True	NA	NA	False	NA	NA	NA	21727704	21747962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_21727916_21730396_21730504_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
49728	chr2	+	2002	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1101.09645795553	1	111	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118100_130118363_130118544_130118626_130118779_130118955_130119053_130119395_130119545_130119768_130119891_130120075_130120206_130120332_130120491_130120816
49729	chr7	+	1204	9	Antisense	novelGene_ENSMUSG00000001794.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCTCCTCCCAGTCCCA	8470	False	NA	NA	False	NA	NA	NA	29886364	29893355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_29886959_29887095_29887157_29889476_29889593_29889902_29889982_29890082_29890153_29891586_29891652_29891744_29891802_29891926_29892024_29893290
49731	chr19	+	2987	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	353	13	153	-13	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGCCAAAGCCTCTCATG	NA	False	NA	NA	False	NA	NA	NA	6327107	6350113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
49732	chr15	+	1126	4	ISM	ENSMUSG00000022272.18	ENSMUST00000022882.12	5880	21	54090	1248	26810	-1248	3prime_fragment	FALSE	canonical	3	719	junction_2	36.1201698039567	1	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTCTTAAGCTTTAGTT	NA	False	NA	NA	False	NA	NA	NA	25807085	25812509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_25807264_25807821_25808275_25810444_25810637_25812206
49733	chr6	-	835	1	NIC	ENSMUSG00000030316.14	novel	724	6	NA	NA	-1988	-2141	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGGAAATGGCCTTGTC	NA	False	NA	NA	False	NA	NA	NA	115011214	115010379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_115010400_115011200
49735	chr6	-	1628	6	ISM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	4682	12	-929	-5	3prime_fragment	FALSE	canonical	3	466	junction_1	6.04648658313239	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAAGAGTTGCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	115010155	114981353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180
49737	chr1	+	883	4	FSM	ENSMUSG00000062169.14	ENSMUST00000193907.6	531	4	-218	-134	-218	1	multi-exon	FALSE	canonical	3	16	junction_1	993.032504782978	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGAGTTTTTGTAGAT	NA	False	NA	NA	False	NA	NA	NA	180972039	180993947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180972467_180983423_180983537_180989639_180989781_180993745
49739	chr16	+	1117	8	ISM	ENSMUSG00000022884.17	ENSMUST00000232287.2	1001	9	0	123	0	-123	5prime_fragment	FALSE	canonical	3	441	junction_1	544.83980045814	14	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAATGTATGCCTGAAT	6054	False	NA	NA	False	NA	NA	NA	22926508	22930185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875
49740	chr10	-	1307	5	NIC	ENSMUSG00000004667.19	novel	900	6	NA	NA	-16	-7	intron_retention	FALSE	canonical	3	2552	junction_1	182.176253941067	197	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAGTTACTGTGGTGCAA	5644	False	NA	NA	False	NA	NA	NA	79875500	79871791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79872433_79872597_79872808_79873021_79873219_79874272_79874448_79875416
49741	chr17	-	2812	1	Intergenic	novelGene_305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTACTTGGGGAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	84054017	84051205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_84051200_84054000
49742	chr8	+	2293	10	NNC	ENSMUSG00000004565.16	novel	5743	27	NA	NA	34	-726	intron_retention	FALSE	canonical	0	0	junction_4	65.5197642408216	1	99	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGGCTGACCCTTGAAC	NA	False	NA	NA	False	NA	NA	NA	3566907	3574328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3567165_3567324_3567408_3567557_3567656_3571274_3571420_3571507_3572182_3572276_3572406_3572587_3572925_3573257_3573342_3573757_3574167_3574251
49743	chr12	-	2691	8	Intergenic	novelGene_4362	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACGCTGCGCGTGCCCCT	NA	False	NA	NA	False	NA	NA	NA	57412738	57277307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_57277395_57350127_57350336_57352794_57352922_57354142_57354249_57372307_57372440_57378781_57378815_57379073_57379244_57410910
49744	chr9	+	1133	7	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	7	2	combination_of_known_splicesites	FALSE	canonical	3	80	junction_2	1016.0228699307	55	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	9576	False	NA	NA	False	NA	NA	NA	64188895	64212076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64188935_64195389_64195526_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
49745	chr8	-	2408	15	NNC	ENSMUSG00000019470.13	novel	2677	19	NA	NA	6	-796	intron_retention	FALSE	non_canonical	0	0	junction_10	143.351092476778	1	98	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGATGCTCAAGGTGTCG	1031	False	NA	NA	False	NA	NA	NA	3671296	3660885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_3661019_3661113_3661237_3661393_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666166_3666266_3666385_3668054_3668253_3668542_3668667_3668858_3669094_3671227
49746	chr1	-	1417	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	71	899	14	4	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	7	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCGTTGTCATGTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	161078718	161068580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
49747	chr4	-	2107	7	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	8	-26	intron_retention	FALSE	canonical	0	0	junction_3	56.8946394662977	1	57	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATCAACAGAAATATGAAAA	1981	False	NA	NA	False	NA	NA	NA	116664795	116661234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663221_116663341_116663455_116663553_116663682_116664002_116664664
49748	chr17	+	2479	5	FSM	ENSMUSG00000044477.13	ENSMUST00000226421.3	3489	5	197	813	4	-5	multi-exon	FALSE	canonical	2	11	junction_1	47.3623004086584	167	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACATTTGGATTGTCTG	NA	False	NA	NA	False	NA	NA	NA	30224218	30428989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_30224283_30354296_30354480_30372276_30372343_30411536_30411705_30426991
49749	chr3	+	3637	23	Intergenic	novelGene_3130	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCCAAAACAGCCCCCCA	NA	False	NA	NA	False	NA	NA	NA	63606400	63806761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_63606902_63609204_63609560_63611554_63611634_63611936_63612084_63615136_63615225_63616943_63617063_63618380_63618495_63618589_63618765_63623397_63623502_63626607_63626704_63628593_63628666_63630170_63630322_63639029_63639145_63648039_63648214_63651897_63652021_63660548_63660752_63662671_63662767_63674877_63675048_63681060_63681192_63688732_63688979_63691412_63691559_63778076_63778195_63806646
49750	chrX	+	1050	5	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-46	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1722.54905590523	97	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCATTTTCTGTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483170_100491521
49751	chr2	+	4026	24	NNC	ENSMUSG00000026854.17	novel	5088	25	NA	NA	3	-973	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	12.767515490331	2	174	18	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCACAATAAATACTTGT	NA	False	NA	NA	False	NA	NA	NA	30872377	30912621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30872411_30886059_30886160_30888784_30888881_30890068_30890123_30892567_30892631_30892927_30893060_30894415_30894513_30894943_30895014_30896395_30896510_30897790_30897870_30900177_30900626_30900990_30901135_30901392_30901490_30901615_30901808_30902318_30902414_30906299_30906370_30907132_30907322_30907396_30907524_30907693_30907864_30907944_30908031_30908726_30908836_30909796_30909900_30910840_30910913_30911335
49752	chr4	-	2810	12	Antisense	novelGene_ENSMUSG00000028248.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	103	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACAAGATGGCGCCCGGT	NA	False	NA	NA	False	NA	NA	NA	21875210	21848057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_21848139_21854345_21854446_21857179_21857367_21859081_21859301_21860811_21860990_21861984_21862178_21865876_21866014_21869514_21869612_21870347_21870405_21871435_21871614_21873586_21874668_21874908
49753	chr11	+	3129	6	NNC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-15924	-1404	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCAACCTCGGACGCTACC	NA	False	NA	NA	False	NA	NA	NA	5033001	5049103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_5033572_5035895_5038145_5041856_5041982_5043679_5043733_5043868_5043906_5049008
49754	chr2	-	1204	13	NNC	ENSMUSG00000017670.17	novel	3052	20	NA	NA	13	690	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	94.0770960436173	3	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAACATGCTGTACCTGGC	NA	False	NA	NA	False	NA	NA	NA	165168386	165139508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165139566_165140128_165140258_165140535_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
49755	chrX	+	2398	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	-28	-6	0	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	1	132	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	133502006	133507809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
49756	chr6	-	2948	9	NIC	ENSMUSG00000004267.17	novel	2795	12	NA	NA	7	-2	intron_retention	FALSE	canonical	2	3	junction_4	17.7886902272202	2	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCACCCCTTGTCTGAGG	9960	False	NA	NA	False	NA	NA	NA	124746472	124737329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124738326_124738610_124738670_124739615_124740888_124743067_124743291_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
49758	chr4	+	2370	13	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	-3	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	47.2622705995197	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	115696426	115736445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731955_115732012_115732577_115732743_115733777_115733822_115735146
49761	chr6	-	2419	7	Antisense	novelGene_ENSMUSG00000038301.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGCGCCTAAGAGCGAACC	NA	False	NA	NA	False	NA	NA	NA	51567642	51500951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_51501015_51538997_51539053_51552890_51553005_51556827_51556926_51557280_51557373_51565193_51565407_51565858
49762	chr3	-	4136	17	NNC	ENSMUSG00000034109.16	novel	4551	16	NA	NA	-5	0	intron_retention	FALSE	non_canonical	0	0	junction_16	9.53939201416946	27	39	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTAGAATATTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	75864249	75783489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75809707_75809792_75810553_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418_75863611_75864018
49763	chr11	-	2836	4	FSM	ENSMUSG00000054519.9	ENSMUST00000057799.8	3412	4	-28	604	-28	-604	multi-exon	FALSE	canonical	2	7	junction_3	2.86744175568088	48	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGTCCCTGTCTGTAGC	NA	False	NA	NA	False	NA	NA	NA	59363328	59352626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59355113_59355837_59355899_59356276_59356404_59363166
49764	chr15	+	1026	4	NNC	ENSMUSG00000042406.9	novel	659	4	NA	NA	-22	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	630.303630535845	28	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATGTGGGTTTTCAGT	4462	False	NA	NA	False	NA	NA	NA	80139701	80141740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141159_80141538
49765	chr1	-	2394	10	NIC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	-16	-7	intron_retention	FALSE	canonical	3	53	junction_6	23.0656604361988	166	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGGTTTGCTCTTTAC	5173	False	NA	NA	False	NA	NA	NA	171108776	171104571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171108097_171108247_171108343_171108446
49766	chr9	-	2550	20	NNC	ENSMUSG00000032590.15	novel	2518	22	NA	NA	1	-9	intron_retention	FALSE	canonical	3	6	junction_15	44.0966578717374	1	78	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACACAGAGCCTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	107971674	107962621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969379_107969474_107969613_107969752_107969917_107969989_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
49767	chr9	+	5557	33	FSM	ENSMUSG00000052911.10	ENSMUST00000065014.10	5629	33	33	39	9	-39	multi-exon	TRUE	canonical	3	106	junction_6	29.6719037980376	70	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTAGCAAGAGCTTTCAA	9125	False	NA	NA	False	NA	NA	NA	108357088	108367690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108357174_108357256_108357343_108357476_108357650_108357736_108357873_108357954_108358029_108358432_108358622_108358702_108358767_108359006_108359210_108359299_108359421_108359706_108359896_108360079_108360260_108360369_108360483_108360728_108360809_108360886_108361020_108361209_108361369_108361444_108361573_108362385_108362513_108362696_108362890_108362965_108363110_108363313_108363546_108363620_108363785_108363862_108364088_108364174_108364393_108364491_108364589_108364674_108365048_108365145_108365331_108365403_108365646_108365724_108366074_108366365_108366574_108366651_108366794_108366975_108367153_108367244_108367405_108367482
49768	chr11	-	1647	5	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCGCCTCAATCCGGGAC	NA	False	NA	NA	False	NA	NA	NA	75656459	75623756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642920_75647727_75647843_75650110_75650253_75655443
49769	chr8	+	2403	5	ISM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	4656	9	52	-9	3prime_fragment	FALSE	canonical	3	94	junction_2	4.49305018890286	129	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCTTTAAGAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	84752755	84756915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
49771	chr7	+	1114	5	Antisense	novelGene_ENSMUSG00000064741.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACGAGGTAGGAAACGGC	NA	False	NA	NA	False	NA	NA	NA	115930749	115933368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_115930819_115931613_115931714_115932162_115933010_115933134_115933183_115933318
49773	chr15	-	2361	8	FSM	ENSMUSG00000018865.10	ENSMUST00000229826.2	1319	8	0	-1042	0	-6	multi-exon	FALSE	canonical	3	60	junction_2	10.0285307284481	94	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTGTGTGTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	83989810	83960303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83961784_83962969_83963099_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
49774	chr6	+	1330	6	NNC	ENSMUSG00000079426.14	novel	2270	6	NA	NA	15	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	522.364087586427	4	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGAGGTCTGTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	113355122	113366607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365822
49775	chr9	+	4546	2	NNC	ENSMUSG00000025602.14	novel	3329	6	NA	NA	13024	26298	intron_retention	FALSE	non_canonical	0	0	junction_1	0	24	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAGGGAATCTGACTTT	NA	False	NA	NA	False	NA	NA	NA	40116648	40151198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40121120_40151123
49776	chr11	-	2038	12	NNC	ENSMUSG00000005949.10	novel	2723	12	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	19.9059773405954	23	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTACACTCGGAACGT	4468	False	NA	NA	False	NA	NA	NA	73089865	73074429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_73074725_73075245_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
49777	chr7	+	1940	1	NIC	ENSMUSG00000035674.14	novel	515	4	NA	NA	725	-46	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	89	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATCAGAGGTGGGAGCAA	1224	False	NA	NA	False	NA	NA	NA	3621340	3623280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3621300_3623300
49779	chr8	+	2277	16	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	34	144	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	324.03806360776	1	114	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCACTACAAACTGTCGC	NA	False	NA	NA	False	NA	NA	NA	107621254	107649864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637578_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
49780	chr1	-	1291	9	NNC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	19	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	292.502884601161	7	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATTTACAAACAAGACC	811	False	NA	NA	False	NA	NA	NA	175453182	175428959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_175429133_175431503_175431658_175433620_175433749_175437304_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
49781	chr15	+	1387	11	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	64	237	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	344.929398573099	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTCTAAACTTTTTTT	NA	False	NA	-30	True	NA	NA	NA	101982362	102003871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990531_101994993_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003164_102003687
49782	chr2	+	3425	6	NNC	ENSMUSG00000015095.13	novel	2388	9	NA	NA	8	-32	intron_retention	FALSE	canonical	0	0	junction_5	121.984589190602	1	144	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGGCCTGAATAAACAG	NA	False	NA	NA	False	NA	NA	NA	25390898	25395451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25392164_25392882_25393058_25393136_25393286_25393448_25394340_25394428_25394644_25394721
49783	chr15	+	2116	14	NIC	ENSMUSG00000022556.12	novel	2102	13	NA	NA	38	2	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	103.530403161092	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATACATACATATATA	7198	False	NA	NA	False	NA	NA	NA	76361698	76385174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76383331_76383416_76384147_76384254_76384330_76384397_76384466_76384537_76384616
49784	chr3	+	1916	12	NNC	ENSMUSG00000027810.15	novel	1945	13	NA	NA	-5748	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	348.848258470666	2	87	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	58444952	58464922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58445034_58446966_58447038_58448460_58448556_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
49785	chr3	+	2347	5	NIC	ENSMUSG00000028057.15	novel	1204	6	NA	NA	2	-262	intron_retention	FALSE	canonical	3	56	junction_3	7.24568837309472	216	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATCAGGTCGGTCCAAC	2257	False	NA	NA	False	NA	NA	NA	88624184	88638086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88624265_88624632_88624966_88633301_88633376_88633586_88633779_88636418
49786	chr5	-	1545	6	NNC	ENSMUSG00000025856.16	novel	2060	6	NA	NA	15	128	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	149.420212822764	3	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTATTTCTGATGCGCC	NA	False	NA	NA	False	NA	NA	NA	138980693	138962142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138962941_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
49787	chr16	-	1630	2	Antisense	novelGene_ENSMUSG00000022961.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTAGCTTTGGCTATT	5772	False	NA	NA	False	NA	NA	NA	91460887	91459027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_91459148_91459377
49788	chr19	+	1891	1	NIC	ENSMUSG00000024843.16	novel	2683	13	NA	NA	7213	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTCTTGCAGAGAGGTCA	NA	False	NA	NA	False	NA	NA	NA	3932617	3934508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_3932600_3934500
49789	chr7	-	1919	7	NIC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-2485	0	intron_retention	FALSE	canonical	3	8	junction_6	20.7685659912603	112	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	4501	False	NA	NA	False	NA	NA	NA	44993069	44988549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
49790	chr12	+	3250	17	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	20993	12069	-11358	11118	internal_fragment	FALSE	canonical	3	82	junction_2	15.5924661295127	4	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCCTGCCCAAGTCACAG	8778	False	NA	NA	False	NA	NA	NA	71083756	71133297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581_71118667_71119363_71119506_71121709_71122844_71123216_71123322_71133228
49791	chr17	+	1723	4	ISM	ENSMUSG00000041130.11	ENSMUST00000234988.2	3285	9	2645	-124	2645	0	3prime_fragment	FALSE	canonical	3	262	junction_2	129.740767173108	387	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTGGTGTTCTGAGTC	2142	False	NA	NA	False	NA	NA	NA	24898760	24900990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24899250_24899597_24899773_24899854_24900006_24900082
49792	chr11	+	2814	17	FSM	ENSMUSG00000020823.17	ENSMUST00000021177.15	2866	17	52	0	-14	0	multi-exon	FALSE	canonical	3	28	junction_16	82.8488599423673	118	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGTGTCCTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	117006049	117050091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117049579
49793	chr15	-	3360	12	NNC	ENSMUSG00000022614.9	novel	2815	13	NA	NA	0	-19	intron_retention	FALSE	canonical	0	0	junction_11	71.1810635046491	1	156	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAAAGGCCCATTTGTA	NA	False	NA	NA	False	NA	NA	NA	89239836	89235369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238632
49797	chr5	+	1793	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	34	780	-12	-780	multi-exon	FALSE	canonical	3	243	junction_3	24.1909073827337	623	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAATAAACATACAGGCT	NA	False	NA	NA	False	NA	NA	NA	115080250	115087062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
49798	chr17	-	3288	1	NIC	ENSMUSG00000048905.6	novel	4597	12	NA	NA	6021	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	15	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAACCGGATCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	29118653	29115365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_29115400_29118700
49799	chr2	-	1795	6	NNC	ENSMUSG00000044627.12	novel	768	5	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	1715.62998341717	78	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGGTTCTGATCCTTG	NA	False	NA	NA	False	NA	NA	NA	32178043	32168830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32169144_32170720_32170816_32171697_32171823_32176443_32177511_32177608_32177658_32177897
49801	chr2	-	1641	7	ISM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	57534	-1	56047	1	3prime_fragment	FALSE	canonical	3	336	junction_4	45.2575960475145	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCGTTTCTAAGGGGTT	9943	False	NA	NA	False	NA	NA	NA	72987257	72923143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081
49802	chr3	-	1892	8	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-1131	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	142.468757763853	1155	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGGAGCACACTGATCC	107	False	NA	NA	False	NA	NA	NA	95042453	95037046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155_95041404_95041496
49803	chr13	-	1781	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	46	78	-16	-78	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	1	81	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCCTGAATCAAACACTG	NA	False	NA	NA	False	NA	NA	NA	97334819	97312916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
49804	chrX	-	3383	6	NIC	ENSMUSG00000046873.19	novel	3891	6	NA	NA	67	-167	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	99.5630453531831	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTTGTGTGAATAT	NA	False	NA	NA	False	NA	NA	NA	156381572	156349109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_156351813_156351929_156352095_156355854_156355983_156359079_156359184_156374349_156374552_156381491
49805	chr6	+	1449	7	FSM	ENSMUSG00000030060.15	ENSMUST00000032141.14	1464	7	-5	20	-5	-20	multi-exon	FALSE	canonical	0	0	junction_5	428.702078630629	872	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACCTTGGCTGGCAAGA	2959	False	NA	NA	False	NA	NA	NA	87890911	87913591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_87890994_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
49806	chr8	+	2105	8	NIC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	-11	1	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	88.6271713990923	214	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTGGTGTGATGAGTGAA	NA	False	NA	NA	False	NA	NA	NA	27532638	27544594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535827_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
49807	chr17	+	1829	3	Antisense	novelGene_ENSMUSG00000092687.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCCGCCCGCCTCGGCC	NA	False	NA	NA	False	NA	NA	NA	35169220	35171448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35169451_35169672_35171146_35171322
49811	chr18	+	1031	2	ISM	ENSMUSG00000014504.17	ENSMUST00000119329.8	613	4	-11	3754	2	-3678	5prime_fragment	FALSE	canonical	3	969	junction_1	0	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACATTACCAATTGGCAT	NA	False	NA	NA	False	NA	NA	NA	34464199	34465720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_34464313_34464802
49812	chr18	+	2117	3	ISM	ENSMUSG00000014504.17	ENSMUST00000140279.8	3295	4	1670	-2	1639	0	3prime_fragment	FALSE	canonical	3	833	junction_1	628.5	9	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	NA	False	NA	NA	NA	34465867	34469606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_34467418_34467509_34467622_34469151
49813	chr17	-	2112	18	NNC	ENSMUSG00000024056.11	novel	2201	17	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	149.949403231263	2	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCCCCTCCCATTTC	NA	False	NA	NA	False	NA	NA	NA	71833792	71803096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821266_71824557_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830386_71830439_71830576_71830655_71832675_71832738_71833705
49814	chr2	-	3228	28	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	-33	-3902	combination_of_known_junctions	FALSE	canonical	2	2	junction_27	25.1577737537906	37	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAGAAAATGACA	NA	False	NA	NA	False	NA	NA	NA	33021699	32880287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32880792_32882134_32882274_32885058_32885178_32887667_32887776_32892790_32892858_32893795_32893955_32895060_32895240_32896809_32896927_32897260_32897360_32901411_32901524_32905197_32905273_32906696_32906802_32908512_32908629_32912673_32912781_32913500_32913547_32916091_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33021602
49815	chr9	-	2800	22	FSM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	50	778	40	-778	multi-exon	FALSE	canonical	3	14	junction_3	5.49706167646225	100	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGGAAGTCTGGATGAAAA	NA	False	NA	NA	False	NA	NA	NA	49397475	49349040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_49349757_49351456_49351683_49353136_49353237_49354401_49354504_49355967_49356037_49356484_49356584_49357041_49357180_49357824_49357886_49359226_49359320_49364623_49364793_49367160_49367250_49368132_49368203_49369295_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
49816	chr3	+	1861	13	NNC	ENSMUSG00000028048.12	novel	1938	12	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	129.382588344285	2	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGCTATCTGTGACTA	NA	False	NA	NA	False	NA	NA	NA	89110251	89115990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114628_89114701_89114759_89115130_89115295_89115618_89115736_89115823
49817	chr1	+	3219	9	NNC	ENSMUSG00000025969.16	novel	6708	16	NA	NA	64149	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.80124188831496	2	65	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAACTATTTTTCCTAC	8604	False	NA	NA	False	NA	NA	NA	62807009	62857841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_62807082_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62851692_62851744_62854491_62855911_62856803
49819	chr4	-	2565	23	NNC	ENSMUSG00000040738.11	novel	3220	27	NA	NA	6354	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	172.155777045814	1	56	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTACAATTTAGTGGT	6353	False	NA	NA	False	NA	NA	NA	11247904	11204382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218679_11218776_11218826_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239432_11241576_11241689_11245721_11245907_11246094_11246147_11247831
49820	chr2	-	2250	10	Antisense	novelGene_ENSMUSG00000042369.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGCCGCTTCCCGGCAGCT	NA	False	NA	NA	False	NA	NA	NA	76219800	76200401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_76200771_76202376_76202500_76203901_76204031_76205699_76205822_76206661_76206848_76208723_76208855_76209021_76209104_76209258_76209423_76210705_76210908_76219058
49821	chrX	-	2164	3	NNC	ENSMUSG00000035427.19	novel	2401	3	NA	NA	-35	-49179	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	13	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCAAACAGAAAAAGAGATT	NA	False	NA	NA	False	NA	NA	NA	85348734	85343040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_85344996_85347819_85347902_85348607
49822	chr11	-	1469	8	NNC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	132	-11	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_4	185.270789133426	2147	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGTGTGTCAATCAAAAC	9588	False	NA	NA	False	NA	NA	NA	69871390	69859068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865787_69866087_69870655_69870737_69870824_69870886_69871039
49823	chr1	-	996	4	NNC	ENSMUSG00000060743.13	novel	2841	4	NA	NA	-10	132	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1201.87141112886	4	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	NA	NA	NA	180641122	180630129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180630734_180637681_180637836_180639363_180639515_180641035
49824	chr16	-	1778	9	NIC	ENSMUSG00000022540.17	novel	1431	11	NA	NA	-2	0	intron_retention	FALSE	canonical	2	3	junction_1	168.985530075803	3	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	4831383	4826593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4827117_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4830160_4830290_4830374_4831166_4831239_4831326
49825	chr11	+	1767	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	-65	4	34	-1	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	25	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCCTCCTTGTCCTAT	2351	False	NA	NA	False	NA	NA	NA	69886636	69890831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
49828	chr8	-	1176	5	FSM	ENSMUSG00000006589.9	ENSMUST00000213029.2	929	5	29	-276	-6	-3	multi-exon	FALSE	canonical	3	286	junction_3	493.303152229945	72	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGCTGCTTCTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	123303563	123301378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123303361_123303491
49829	chr12	-	3035	12	NNC	ENSMUSG00000041846.16	novel	4083	15	NA	NA	-7238	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	211.86761030776	4	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAGTGAAGAGTAAGAG	4170	False	NA	NA	False	NA	NA	NA	101024903	101005793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017689_101017789_101017922_101019687_101019844_101021788_101021906_101022008_101022087_101024582
49830	chr5	+	1691	2	NNC	ENSMUSG00000018604.19	novel	4777	8	NA	NA	2503	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	119820816	119822789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_119821649_119821930
49831	chr3	-	1741	12	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	4	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	308.535034912723	1	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTTTTCTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	157630710	157599920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624147_157625661_157625750_157626591_157626674_157630502
49832	chr11	-	1482	6	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	83	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGGCCTCCGCCGGAACC	NA	False	NA	NA	False	NA	NA	NA	48696915	48691183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691398_48692487_48693248_48694647_48694799_48694986_48695123_48696370_48696481_48696804
49833	chr11	-	1023	1	Intergenic	novelGene_2239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAATTATAAATAAATTGG	NA	False	NA	NA	False	NA	NA	NA	29665886	29664863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_29664900_29665900
49834	chr11	+	3722	8	NNC	ENSMUSG00000018809.3	novel	3517	11	NA	NA	-13	-30	intron_retention	FALSE	non_canonical	0	0	junction_7	28.6926001980031	5	36	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTTGGCAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	75239307	75296501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75292447_75296108
49836	chr2	-	1354	13	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-27	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	308.566308379037	2432	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCCTACTGTGATGGTT	NA	False	NA	NA	False	NA	NA	NA	5849779	5799473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5838017_5838466_5838525_5846763_5846836_5849645
49837	chr5	-	1609	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	52	1060	0	590	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	96	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGAAGCTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	108134899	108056978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
49838	chr9	-	2407	3	NIC	ENSMUSG00000003308.16	novel	3614	5	NA	NA	3187	-3	combination_of_known_junctions	FALSE	canonical	3	121	junction_2	10.5	3	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTGTGGCTCTGAATTA	4634	False	NA	NA	False	NA	NA	NA	21145302	21141029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_21142165_21142545_21143199_21144683
49839	chr14	-	3041	9	NNC	ENSMUSG00000022180.8	novel	4084	11	NA	NA	27183	-6	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_7	6.32331993497087	36	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGAGTGATGGAGTTAAT	2345	False	NA	NA	False	NA	NA	NA	54992204	54959671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54961709_54962194_54962373_54964191_54964342_54966789_54966887_54970636_54970741_54972510_54972635_54973180_54973335_54974996_54975123_54992133
49840	SIRV6	-	1185	8	Genic_Genomic	SIRV6C_SIRV6B	novel	276	1	NA	NA	-9119	457	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGGTTTCTTGACTACC	NA	False	NA	NA	False	NA	NA	NA	11666	1087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV6_-_1185_1466_1542_1647_1745_1861_2030_2470_2614_10745_10813_11031_11109_11205
49841	chr17	-	1140	6	NIC	ENSMUSG00000024436.17	novel	1079	7	NA	NA	12	3	intron_retention	FALSE	canonical	3	1278	junction_5	53.4901860157543	687	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTTGACTCCCTTTGGG	4320	False	NA	NA	False	NA	NA	NA	36227257	36221274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225482_36225587_36225697_36227183
49843	chr19	+	3637	4	Antisense	novelGene_ENSMUSG00000025092.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGCAGAAGACAGCAACCT	NA	False	NA	NA	False	NA	NA	NA	58785264	58793939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_58788430_58789243_58789349_58792897_58793161_58793835
49844	chr16	+	1369	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	25	0	25	0	multi-exon	FALSE	canonical	3	19	junction_1	52	480	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAATTTTGGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	32066095	32075901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32066344_32070640_32071137_32075276
49847	chr1	+	1671	14	NIC	ENSMUSG00000006005.19	novel	7480	51	NA	NA	-658	-2	combination_of_known_junctions	FALSE	canonical	3	51	junction_10	166.313669571658	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAAAGTATCACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	150312527	150325676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321874_150321993_150323262_150323382_150324893_150324990_150325482
49848	chr7	-	1764	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	738	3266	44	-320	multi-exon	FALSE	canonical	3	42	junction_2	4	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCTGTCCGCCCCTACTC	NA	False	NA	NA	False	NA	NA	NA	127475262	127465484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127466536_127466927_127467597_127475218
49849	chr4	+	1010	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107849.10	1099	6	87	2	79	-1	multi-exon	FALSE	canonical	2	8	junction_4	631.636794368409	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACATGAAGCATCTTTAA	87	False	NA	NA	False	NA	NA	NA	44012764	44032844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44030214_44030269_44032400
49851	chrX	+	3117	13	NIC	ENSMUSG00000079487.12	novel	6816	45	NA	NA	93	-1986	intron_retention	FALSE	canonical	3	91	junction_6	9.12071817347735	3	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCAGTGTAGGGCACTCC	NA	False	NA	NA	False	NA	NA	NA	100317728	100325548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100322166_100322950_100323078_100324161_100324392_100324773
49852	chr19	+	1005	5	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	5	2	intron_retention	FALSE	non_canonical	0	0	junction_4	2714.10412244998	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540548	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543840_5543952
49853	chr7	-	1636	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	-22	-2	8	0	multi-exon	FALSE	canonical	3	23	junction_9	39.3474550920669	177	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	140680477	140671087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
49854	chr17	-	1684	7	NNC	ENSMUSG00000024327.17	novel	2433	6	NA	NA	-8	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	307.816323298309	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCCACATGCAGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	34250664	34247252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248479_34248681_34248819_34248958_34249063_34249229_34249337_34249396_34249539_34249621_34250413
49855	chr10	+	1600	12	Antisense	novelGene_ENSMUSG00002076354.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGAGTCCTGCTGTCGG	3269	False	NA	NA	False	NA	NA	NA	128394534	128401883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128394839_128394929_128394989_128395104_128395191_128395278_128395401_128395947_128396163_128396526_128396605_128396785_128396849_128398694_128398791_128398936_128399003_128399091_128399201_128399447_128399574_128401607
49856	chr13	+	1638	6	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-35	2305	multi-exon	FALSE	canonical	3	19	junction_4	47.642837866777	408	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	66261258	66328219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840_66326525_66327712
49857	chr7	-	1043	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	886.543948622687	3	24	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875295	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113868998_113869577_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
49858	chr15	+	3274	17	NNC	ENSMUSG00000019080.9	novel	2246	5	NA	NA	490	4992	intron_retention	TRUE	non_canonical	0	0	junction_1	0	1	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGCCTGACATCTGAGG	NA	False	NA	30	True	NA	NA	NA	76587788	76593431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76588065_76588152_76588265_76588444_76588599_76588675_76588859_76588939_76589106_76589188_76589319_76589392_76590059_76590147_76590287_76590357_76590537_76590614_76590802_76590879_76590969_76591238_76591378_76591454_76591547_76592326_76592427_76592529_76592634_76592733_76592860_76592999
49859	chr17	+	2054	6	NNC	ENSMUSG00000017831.9	novel	2366	6	NA	NA	73	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	370.3029030402	1	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTGGAATAAAGTGATGT	NA	False	NA	NA	False	NA	NA	NA	53786387	53814679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_53786480_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
49861	chr17	+	1400	5	NNC	ENSMUSG00000046711.17	novel	1631	5	NA	NA	2859	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2146.87672852914	1	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGACAGTCTCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	27778527	27782636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27778645_27779901_27779980_27780434_27780486_27781411_27781822_27781892
49862	chr9	+	1805	8	NIC	ENSMUSG00000010057.9	novel	1736	9	NA	NA	5	-3	intron_retention	FALSE	canonical	2	6	junction_4	41.2360056657444	266	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTGAGTACTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	107419429	107422902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421375_107421487_107421578_107421677_107421796_107422587_107422689
49863	chr12	-	1534	3	ISM	ENSMUSG00000020986.14	ENSMUST00000165134.2	2529	18	38273	-935	2309	-386	3prime_fragment	FALSE	canonical	3	639	junction_2	41	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTAAAAGCCTGGGAAACA	NA	False	NA	NA	False	NA	NA	NA	59015748	59005554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_59006873_59013765_59013832_59015598
49864	chr11	-	4171	30	NNC	ENSMUSG00000018501.18	novel	8852	45	NA	NA	26	-483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.368520890996	1	244	21	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGACTGTGCTGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	62349341	62236093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62236145_62240220_62240320_62242203_62242368_62244055_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257785_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289086_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62349280
49865	chr11	+	2478	2	FSM	ENSMUSG00000043372.13	ENSMUST00000130341.2	370	2	-523	-1585	3	-12	multi-exon	FALSE	canonical	3	27	junction_1	0	70	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCCTGCAAAAAATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	103024167	103030690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_103024968_103029012
49866	chr3	+	1638	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	22	389	22	7	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	1	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTAAAAAGTTGATTTGCT	NA	False	NA	NA	False	NA	NA	NA	121220167	121251467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
49867	chr4	+	3474	5	NNC	ENSMUSG00000028522.17	novel	224	3	NA	NA	-89	2915	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	10.1365674663566	8	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATGAAGTGGTTGGAGT	2795	False	NA	NA	False	NA	NA	NA	102971869	102991133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_102972021_102972756_102972858_102973140_102973291_102975438_102975513_102988135
49868	chr9	-	1198	9	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-428	-14	combination_of_known_junctions	FALSE	canonical	3	131	junction_4	48.0154597499597	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCACGCACAACCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	61834398	61826198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318
49870	chr16	-	1553	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	39	1374	18	-1374	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTTGTCTGACTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	38273026	38265765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
49871	chr16	-	2249	14	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	178.162680795958	1	100	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATATTCTTATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30406383	30380186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401492_30404411_30404488_30406255
49872	chr4	-	2188	12	FSM	ENSMUSG00000000409.15	ENSMUST00000067240.11	2185	12	-3	0	-3	0	multi-exon	TRUE	canonical	3	10	junction_9	59.1335510476424	179	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	NA	False	NA	NA	NA	129452187	129442141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873
49873	chr8	+	2102	4	NNC	ENSMUSG00000005483.11	novel	2996	3	NA	NA	101	-750	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	288.777884656472	7	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGCAGTCCTTCGACTC	NA	False	NA	NA	False	NA	NA	NA	84334922	84338532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84335172_84336442_84336543_84336585_84337024_84337217
49874	chr1	+	2579	8	ISM	ENSMUSG00000025911.15	ENSMUST00000027044.15	2022	13	6222	163	6158	-163	3prime_fragment	FALSE	canonical	3	51	junction_6	9.37212540963242	6	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCTGTTTCATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	9624501	9646963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
49875	chr8	+	1489	11	NNC	ENSMUSG00000005481.19	novel	1656	11	NA	NA	-35	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	715.882120184601	1	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGAATGCATGGCTCC	NA	False	NA	NA	False	NA	NA	NA	84441861	84449897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449688_84449808
49876	chr3	+	2915	3	NIC	ENSMUSG00000027533.11	novel	987	4	NA	NA	-10	-5	intron_retention	FALSE	canonical	3	332	junction_1	42.5	7	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAATTTATGATATGTGTG	NA	False	NA	NA	False	NA	NA	NA	10077654	10081390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_10080204_10080531_10080634_10081126
49877	chr4	+	1057	7	NNC	ENSMUSG00000054405.15	novel	1837	8	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1167.55394831341	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGATGGTCTCCTCCT	2429	False	NA	NA	False	NA	NA	NA	132262958	132281048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132262975_132265497_132265535_132272019_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
49878	chr3	-	1257	5	ISM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	26834	0	26757	0	3prime_fragment	FALSE	canonical	3	722	junction_3	32.6228447563973	4	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCTGTCTTCTCTGA	NA	False	NA	NA	False	NA	NA	NA	131038916	131027067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808
49880	chr4	+	711	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	-27	-48	-27	48	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATACATTTCAGGCA	-7	True	NA	NA	False	NA	NA	NA	10848392	10849103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_10848400_10849100
49881	chr11	-	1437	7	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	7	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	571.101980579846	8	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAGCAATAACTAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	17161561	17153214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_17154002_17154500_17154557_17158856_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
49882	chr13	-	553	4	FSM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	-16	-3	-6	-2	multi-exon	FALSE	canonical	3	341	junction_3	967.204333231723	630	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGTGAGTTGTTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	73476587	73467994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476396
49883	chr8	-	1730	1	NIC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	1061	-9079	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGTAACATTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	43758912	43757182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_43757200_43758900
49884	chr5	+	3209	3	Antisense	novelGene_ENSMUSG00000040464.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCGCCCGCAGAATCCGGA	NA	False	NA	NA	False	NA	NA	NA	5604537	5609484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_5605382_5606063_5606157_5607212
49887	chr7	-	1425	5	ISM	ENSMUSG00000025507.14	ENSMUST00000138065.8	3699	13	3300	9	68	-9	3prime_fragment	FALSE	canonical	3	62	junction_2	7.22841614740048	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTGTGTGAGACAGA	NA	False	NA	NA	False	NA	NA	NA	141019969	141018046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_141018761_141018990_141019405_141019483_141019603_141019704_141019829_141019915
49888	chr17	-	1765	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	429	1830	multi-exon	FALSE	canonical	3	12	junction_1	85.3494616986241	3	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTAAGTGGCTCATGTT	NA	False	NA	NA	False	NA	NA	NA	37299508	37278256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37278611_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37298307_37298416_37298546_37298823_37299396
49889	chr8	+	2220	1	NIC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	-5834	-7337	mono-exon	FALSE	NA	NA	NA	NA	NA	17	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACCTGCCCTGTTAAGC	NA	False	NA	NA	False	NA	NA	NA	120658586	120660806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_120658600_120660800
49890	chr9	-	1924	14	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-50	-3	intron_retention	FALSE	canonical	3	198	junction_13	80.9911237740131	1011	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATGTTCTTAATACTGTG	NA	False	NA	NA	False	NA	NA	NA	106315451	106310192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106314000_106314087_106314153_106314827_106314937_106315331
49891	chr15	-	372	4	Antisense	novelGene_ENSMUSG00000115902.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCTCTGGGCCCCAGG	NA	False	NA	NA	False	NA	NA	NA	79792105	79776718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79776768_79779608_79779763_79781897_79781985_79792023
49892	chr9	+	1504	10	NNC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	264.915127335828	2	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGAGTCTTCACTCT	NA	False	NA	NA	False	NA	NA	NA	20799567	20803473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20799614_20799702_20799874_20800633_20800725_20801072_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
49893	chr13	+	2787	5	NNC	ENSMUSG00000097709.9	novel	593	5	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.52627944162882	32	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTACTAAGTTATGGACA	NA	False	NA	NA	False	NA	NA	NA	3528242	3544391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3528391_3528626_3528791_3529908_3530002_3535048_3535221_3542181
49895	chr11	+	3302	15	NNC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	23	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	277.940503470415	1	231	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788962	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789046_74789211_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798941_74799068
49896	chr6	+	1567	1	Antisense	novelGene_ENSMUSG00000096403.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	63	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCCCAAGGCCGCCACC	NA	False	NA	NA	False	NA	NA	NA	7981817	7983384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_7981800_7983400
49897	chr6	-	2165	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	-30	-2	-30	0	multi-exon	FALSE	canonical	3	41	junction_4	6.09998988058258	87	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTTGGCTGTTCTATGT	8736	False	NA	NA	False	NA	NA	NA	50238779	50184380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
49898	chr2	+	2197	4	FSM	ENSMUSG00000027088.11	ENSMUST00000112266.8	2194	4	-3	0	-3	0	multi-exon	FALSE	canonical	3	18	junction_1	37.7918274528002	227	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	69619990	69627567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_69620249_69620629_69620666_69622680_69622836_69625819
49899	chr4	-	1593	7	NIC	ENSMUSG00000028617.11	novel	1755	8	NA	NA	48	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	75.1886516259823	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	NA	False	NA	NA	NA	107110681	107090710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_107091182_107092996_107093082_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
49901	chr6	-	2504	4	Intergenic	novelGene_4205	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	1	15	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCACTGTAGAGCCAAATAA	NA	False	NA	NA	False	NA	NA	NA	88657164	88644353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_88646658_88653637_88653742_88655901_88655962_88657128
49902	chr2	-	3479	19	FSM	ENSMUSG00000026797.17	ENSMUST00000050000.16	3892	19	49	364	6	-5	multi-exon	FALSE	canonical	3	22	junction_3	6.44827472379863	37	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACTCATGGTGCCTGGG	5198	False	NA	NA	False	NA	NA	NA	32737208	32677977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32679650_32686027_32686183_32688116_32688203_32690591_32690694_32691831_32691942_32692765_32692905_32696080_32696162_32696732_32696799_32698013_32698075_32699112_32699221_32701116_32701248_32702032_32702118_32704890_32705040_32707297_32707402_32708438_32708518_32709845_32709923_32711846_32711929_32713547_32713598_32737066
49903	chr2	-	2399	7	NNC	ENSMUSG00000039804.16	novel	3179	8	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	41.7788489815388	10	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACCTGTGCTAATCTTT	3039	False	NA	NA	False	NA	NA	NA	164876730	164842281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164843695_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
49904	chr9	-	2200	11	NNC	ENSMUSG00000062762.18	novel	2104	11	NA	NA	-1306	4	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	163.709010136889	338	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTATAATGTTTGATTTC	NA	False	NA	NA	False	NA	NA	NA	36709995	36690450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36709838
49905	chr15	-	2233	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	-24	10	-23	-10	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	220	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACTAAAGGTTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	79489333	79445707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
49906	chr14	-	1401	8	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	19	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1422.87124204145	2	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATCGCTTGCAACTTGCTT	NA	False	NA	NA	False	NA	NA	NA	63746186	63729808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730278_63731283_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734484_63737546_63737770_63746158
49907	chr19	+	1123	8	Antisense	novelGene_ENSMUSG00000024853.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCATCCATCTGCAGG	5649	False	NA	NA	False	NA	NA	NA	5333704	5338021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5333781_5333887_5333975_5334601_5334755_5336218_5336445_5336604_5336685_5336837_5336977_5337096_5337325_5337887
49908	chr11	-	2207	6	FSM	ENSMUSG00000048728.16	ENSMUST00000163301.8	2090	6	-119	2	31	-2	multi-exon	FALSE	canonical	3	11	junction_3	3.42928563989645	66	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACAATTTGTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	50778447	50763548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778219
49910	chrX	+	2777	11	ISM	ENSMUSG00000041020.15	ENSMUST00000043151.12	3087	13	10845	-167	10833	-7	3prime_fragment	FALSE	canonical	3	133	junction_7	19.2520128817742	40	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGAATGCTGTGCCATTG	4192	False	NA	NA	False	NA	NA	NA	158252965	158281746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158272272_158272496_158273675_158273781_158274763_158274821_158275319_158275408_158275893_158276081_158279030_158279306_158280579
49912	chr11	-	1563	11	NNC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	0	-137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	66.4476485663714	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGAATCAAAAAGCTACTG	264	False	NA	NA	False	NA	NA	NA	61652866	61620616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61621131_61625803_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
49914	chr13	-	3608	12	ISM	ENSMUSG00000034575.14	ENSMUST00000044081.9	3994	13	17971	-1	16539	1	3prime_fragment	FALSE	canonical	3	61	junction_1	10.7649569214494	69	18	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACTTTTCCTCTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	69664012	69646079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_69648230_69648591_69648757_69650309_69650469_69651024_69651198_69651753_69651855_69652724_69652852_69655034_69655249_69657681_69657811_69658738_69658847_69661008_69661130_69663083_69663131_69663898
49915	chr6	+	1504	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	260	11	260	-11	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	3	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAATGGAGACATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	145561742	145567194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
49917	chr9	+	2254	12	ISM	ENSMUSG00000001833.18	ENSMUST00000165594.4	2516	14	12947	4	4	-2	3prime_fragment	FALSE	canonical	3	1099	junction_5	121.5479363315	1	119	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACAGAGTGCAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	25176693	25219858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
49918	chr11	+	3775	1	ISM	ENSMUSG00000037926.16	ENSMUST00000037912.12	9178	15	240149	10	64999	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	30	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGACAAATGTTTGTTTC	7202	False	NA	NA	False	NA	NA	NA	77347261	77351036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_77347300_77351000
49919	chr9	+	1589	15	NNC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	859.441263679075	1	68	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGGAAAAAAAAAGTGACAAC	1178	False	NA	NA	False	NA	NA	NA	108437667	108442760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439431_108439490_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440797_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
49920	chr3	-	1877	12	NNC	ENSMUSG00000033439.13	novel	3402	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	50.8106190501992	17	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCTGAGTGTGAGGCTT	NA	False	NA	NA	False	NA	NA	NA	116388520	116374741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383535_116383761_116383878_116383942_116385841_116385909_116386112_116386160_116388287
49921	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	2	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	NA	False	NA	NA	NA	52122863	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
49922	chr10	+	2700	3	NNC	ENSMUSG00000053684.9	novel	3123	3	NA	NA	4	-3298	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	69	21	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAATAGTATATTTTATT	NA	False	NA	NA	False	NA	NA	NA	121575846	121584990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_121576116_121581235_121581522_121582845
49923	chr4	+	2190	8	NNC	ENSMUSG00000028221.4	novel	2339	7	NA	NA	285	62	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	135.842345596441	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCTAATAAAGATTATTAT	93	False	NA	NA	False	NA	NA	NA	14864360	14915238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_14864438_14869718_14869793_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
49924	chr8	+	3375	8	FSM	ENSMUSG00000054823.18	ENSMUST00000136107.9	3818	8	433	10	398	-10	multi-exon	FALSE	canonical	3	91	junction_5	11.0435131943358	33	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAGAACAATCCTTACATA	NA	False	NA	NA	False	NA	NA	NA	26092732	26164922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_26092753_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349
49925	chr9	+	1704	11	NNC	ENSMUSG00000042185.15	novel	5398	26	NA	NA	-3	1753	intron_retention	FALSE	non_canonical	0	0	junction_6	23.6027540765903	1	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTCCATTTGTTGAATT	NA	False	NA	NA	False	NA	NA	NA	31297505	31312247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_31297567_31300172_31300346_31303258_31303461_31305998_31306127_31307618_31307794_31308295_31308434_31309012_31309090_31309855_31309941_31310444_31310626_31311234_31311344_31311872
49927	chr14	+	1518	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	213	498	112	-139	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTACGGTGGTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	73790317	73833084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
49928	chr13	+	2248	9	ISM	ENSMUSG00000021611.10	ENSMUST00000223303.2	3730	17	12584	2	-439	-2	3prime_fragment	FALSE	canonical	3	24	junction_2	5.53962995154008	4	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTCTGTCATACTAATT	NA	False	NA	NA	False	NA	NA	NA	73787692	73797960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299_73794427_73794895_73794958_73796065_73796191_73796406_73796536_73797028
49929	chr7	+	916	5	NIC	ENSMUSG00000059070.17	novel	679	6	NA	NA	3	0	intron_retention	FALSE	canonical	3	6098	junction_1	861.555860057837	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	5953	False	NA	NA	False	NA	NA	NA	45367525	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369912_45370137
49930	chr16	+	2436	10	NNC	ENSMUSG00000008976.17	novel	586	6	NA	NA	2240	251	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	193.60982782932	1	97	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAATAAAGTTTCCCAC	NA	False	NA	NA	False	NA	NA	NA	84634251	84658454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84634334_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
49931	chr13	+	2276	10	Intergenic	novelGene_1524	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAAATTGGTTTCCGGAAG	NA	False	NA	NA	False	NA	NA	NA	100896233	100912366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_100896705_100898270_100898440_100900061_100900112_100900678_100901670_100903239_100903389_100907701_100907778_100907981_100908074_100908161_100908212_100909233_100909287_100912191
49933	chr7	-	2033	5	NNC	ENSMUSG00000070436.13	novel	2215	5	NA	NA	-12	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	794.779647134978	1	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002333	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995609_98996131_98996365_98996472_98996572_98998009_98998663_99002259
49934	chr1	+	1760	6	NIC	ENSMUSG00000026520.9	novel	1580	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	1025	junction_3	48.6399013156894	1598	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	46	False	NA	NA	False	NA	NA	NA	180731887	180735653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180734253_180734354_180734519_180735041
49935	chr15	+	1786	7	ISM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	390	0	47	0	intron_retention	FALSE	canonical	3	312	junction_2	30.1919783312647	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	102427283	102432111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
49937	chr9	+	1603	9	NNC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	283	0	intron_retention	FALSE	non_canonical	0	0	junction_1	67.0298440994756	44	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGAGTGAGGCGTGTT	NA	False	NA	NA	False	NA	NA	NA	108447395	108449972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108447422_108447508_108447645_108447820_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449661_108449749
49938	chr19	-	1898	17	NNC	ENSMUSG00000025041.18	novel	3939	19	NA	NA	4901	346	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	56.9336236331397	3	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTCAGTTTTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	46912763	46877100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46886793_46886961_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912696
49939	chr3	+	1910	4	NIC	ENSMUSG00000037661.15	novel	2139	4	NA	NA	-5	-5	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	76.6130247122221	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTAGCTCATTTTATTTGT	NA	False	NA	NA	False	NA	NA	NA	30910158	30951334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30949858
49940	chr8	+	2478	1	Genic_Genomic	ENSMUSG00000110611.2	novel	NA	NA	NA	NA	-52	618	mono-exon	FALSE	NA	NA	NA	NA	NA	21	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTCCTGAATGTAGT	4749	False	NA	NA	False	NA	NA	NA	106016257	106018735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_106016300_106018700
49941	chr2	+	1673	1	FSM	ENSMUSG00000063684.10	ENSMUST00000121752.2	1428	1	245	-490	245	490	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATTAAAAAAAAAAAAAAAG	8424	False	NA	NA	False	NA	NA	NA	108779395	108781068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_108779400_108781100
49946	chr9	+	2954	14	NNC	ENSMUSG00000025240.11	novel	3558	20	NA	NA	36	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	100.189701723086	2	131	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTTTCTAACCGCTGT	NA	False	NA	NA	False	NA	NA	NA	123358859	123421652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389639_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415507_123415636_123415720_123416609_123416668_123419865
49948	chr5	+	2071	7	NIC	ENSMUSG00000029464.11	novel	1592	8	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	424	junction_4	37.3630833845388	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTTTGAGGTTTGTAA	8112	False	NA	NA	False	NA	NA	NA	122510586	122520964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122520240_122520323
49952	chrX	-	1098	7	NIC	ENSMUSG00000031388.15	novel	834	7	NA	NA	0	3	intron_retention	FALSE	canonical	3	198	junction_1	335.018780568095	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAATGTGCATAGTGGGGT	NA	False	NA	NA	False	NA	NA	NA	72965490	72960489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72960802_72961448_72961534_72963107_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
49956	chr1	-	2382	11	NIC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	56	-719	combination_of_known_junctions	TRUE	canonical	0	0	junction_10	164.904699751099	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATAGTGCACAACACATGA	NA	False	NA	NA	False	NA	NA	NA	36748703	36737913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748647
49958	chr16	+	1688	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	95	287	2	-287	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	950	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCGGAGTCTCGCTAGTT	NA	False	NA	NA	False	NA	NA	NA	31767425	31777003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
49959	chr11	+	2048	15	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	17	1	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	60.1503643092094	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGATTGAGTATTCTT	NA	False	NA	NA	False	NA	NA	NA	51153957	51172594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51159595_51159674_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
49960	chr16	-	2351	2	FSM	ENSMUSG00000022898.14	ENSMUST00000142988.2	594	2	-38	-1719	-14	25	multi-exon	FALSE	canonical	3	360	junction_1	0	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAGGCCCCGTCCCTCAT	NA	False	NA	NA	False	NA	NA	NA	94327314	94310999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_94313233_94327196
49961	chrX	-	730	7	Antisense	novelGene_ENSMUSG00000067194.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCAGCGTGTGGGACCG	NA	False	NA	NA	False	NA	NA	NA	158168690	158155381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158155409_158159373_158159459_158160452_158160557_158161532_158161584_158162723_158162807_158165682_158165776_158168403
49962	chr11	-	3163	21	NIC	ENSMUSG00000020439.18	novel	3335	21	NA	NA	63	1	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	31.5836587494229	4	38	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTCTCTGCTGT	8253	False	NA	NA	False	NA	NA	NA	3489176	3467521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_3467828_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3487635_3487744_3489111
49963	chr1	+	2977	5	NNC	ENSMUSG00000026305.16	novel	2050	13	NA	NA	-9965	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	24.9299017246358	2	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCTACTGGTTGTTCT	6246	False	NA	NA	False	NA	NA	NA	91028970	91045036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_91029033_91030968_91031041_91032848_91032921_91039967_91040020_91042317
49964	chr3	+	3088	12	FSM	ENSMUSG00000028173.11	ENSMUST00000068952.10	3559	12	32	439	32	-439	multi-exon	FALSE	canonical	3	17	junction_6	6.38697020736374	74	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACAAGCTAACATTCATAA	NA	False	NA	NA	False	NA	NA	NA	159545340	159641220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886
49965	chr2	-	1621	7	FSM	ENSMUSG00000038671.16	ENSMUST00000185118.8	2318	7	19	678	-3	593	multi-exon	FALSE	canonical	3	22	junction_2	105.887387770635	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAACCATCCCTTCAATCA	6157	False	NA	NA	False	NA	NA	NA	181007116	181000299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_181001355_181001431_181001533_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
49966	chr13	-	1253	1	ISM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	18096	3468	17583	-3468	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATACTTAGGTGGGGCT	NA	False	NA	NA	False	NA	NA	NA	38160097	38158844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_38158800_38160100
49967	chr10	-	579	4	ISM	ENSMUSG00000004667.19	ENSMUST00000152843.2	900	6	-29	740	-20	-740	5prime_fragment	FALSE	canonical	3	2912	junction_1	40.1081870279207	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCCTTTACTCTGTCCCC	5580	False	NA	NA	False	NA	NA	NA	79875564	79872748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_79872808_79873021_79873219_79874272_79874448_79875416
49968	chr13	+	1881	6	NIC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	-8	-6	intron_retention	FALSE	canonical	3	1274	junction_1	96.7975206294046	4	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGCTGGTCACATTTC	NA	False	NA	NA	False	NA	NA	NA	43551857	43555464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_43552135_43552210_43553046_43554068_43554411_43554772_43554895_43554975_43555054_43555237
49969	chr4	+	1188	5	NNC	ENSMUSG00000028797.21	novel	1437	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	308.124467545179	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3478	False	NA	NA	False	NA	NA	NA	129494774	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494928_129495987_129496055_129500879_129500973_129501248_129501946_129502143
49970	chr9	-	2215	18	NIC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_17	125.657082658103	1	77	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7608	False	NA	NA	False	NA	NA	NA	107749925	107650761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107738821_107738929_107749847
49971	chr10	-	1225	1	Intergenic	novelGene_3489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCAGTCCCAGTCATGGA	NA	False	NA	NA	False	NA	NA	NA	80233625	80232400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_80232400_80233600
49974	chr19	+	2481	1	Intergenic	novelGene_1292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGGAAGTAGACCAACT	NA	False	NA	NA	False	NA	NA	NA	56798850	56801331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_56798800_56801300
49975	chr5	+	1383	11	NIC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	8	-16	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	217.028131817053	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACCCTTCTTTCAAGTCT	5846	False	NA	NA	False	NA	NA	NA	31855321	32242290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
49977	chr7	+	1444	5	NIC	ENSMUSG00000030868.7	novel	1532	6	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	141.324758977329	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	NA	False	NA	NA	NA	121732248	121748267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121747279
49978	chr5	-	1333	3	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	46	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	839	96	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGCCCGGAGAGTTACT	NA	False	NA	NA	False	NA	NA	NA	36954070	36952257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36953289_36953546_36953638_36953859
49980	chr4	+	2089	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-23	134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	326.545732716806	1	94	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTTTTATTCCTACTC	NA	False	NA	NA	False	NA	NA	NA	155954048	155973324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956589_155956682_155957306_155957381_155959594_155959824_155969554_155969664_155969987_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
49981	chr19	+	990	7	NIC	ENSMUSG00000108414.2	novel	744	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	781	junction_1	125.316155737753	47	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	8701503	8703807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702888_8703145_8703191_8703430_8703467_8703602
49982	chr3	-	2392	6	ISM	ENSMUSG00000027829.16	ENSMUST00000135719.8	1981	12	8205	-43	1151	-1	3prime_fragment	FALSE	canonical	3	188	junction_4	11.47170431976	142	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTTTCAAATATCTTATT	NA	False	NA	NA	False	NA	NA	NA	65857248	65853572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111
49985	chr5	+	2204	2	NNC	ENSMUSG00000038181.17	novel	529	2	NA	NA	1	-29	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	3	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTCCTGACTTCTCGAG	NA	False	NA	NA	False	NA	NA	NA	24791740	24794142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24793422_24793619
49986	chr5	-	2150	8	NNC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	373.064857303796	1	103	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTAGCTTTGTATTTTG	NA	False	NA	NA	False	NA	NA	NA	32942985	32893646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_32894782_32895329_32895491_32895735_32895879_32896125_32896265_32896485_32896718_32922116_32922293_32931739_32931811_32942892
49987	chr1	-	1691	1	Genic_Genomic	ENSMUSG00000103804.2	novel	NA	NA	NA	NA	-1002	-322	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTCTGCATGGATTTTA	3659	False	NA	NA	False	NA	NA	NA	38117388	38115697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_38115700_38117400
49988	chr1	-	1969	9	ISM	ENSMUSG00000026082.12	ENSMUST00000194650.6	3576	18	13164	2555	6393	1171	internal_fragment	FALSE	canonical	3	159	junction_7	22.6877582629928	2	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAACCTTGTAATAGTGA	6998	False	NA	NA	False	NA	NA	NA	38114049	38094431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_38094606_38095344_38095548_38095797_38095964_38096754_38096858_38098202_38098376_38102195_38102417_38106580_38106701_38110423_38110579_38113395
49989	chr10	+	1994	2	Antisense	novelGene_ENSMUSG00000034024.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCACCGATAAACGACGACT	NA	False	NA	NA	False	NA	NA	NA	116896332	116898769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_116897487_116897929
49990	chr8	+	1643	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	168	721	45	-7	multi-exon	FALSE	canonical	3	2350	junction_2	129.422649571944	5	58	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTGTCCTGAGTGATGT	10013	False	NA	NA	False	NA	NA	NA	122317267	122324778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
49991	chr11	-	2026	11	NNC	ENSMUSG00000041231.16	novel	2088	11	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	70.3209783777217	872	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACATTGGTTATCTGTT	NA	False	NA	NA	False	NA	NA	NA	44361323	44345404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_44346390_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
49992	chr7	+	1761	1	ISM	ENSMUSG00000048897.16	ENSMUST00000164056.9	5871	5	66172	1427	63172	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGTGACTGTACGTGCTT	NA	False	NA	NA	False	NA	NA	NA	79740733	79742494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79740700_79742500
49993	chr14	+	1173	6	NNC	ENSMUSG00000035960.15	novel	1239	5	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	450.127093163698	294	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	192	False	NA	NA	False	NA	NA	NA	51162437	51164596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_51162487_51162669_51162782_51162973_51163025_51163077_51163162_51163617_51163811_51163912
49994	chr5	-	1057	2	Antisense	novelGene_ENSMUSG00000100157.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCCCTCCCCCCTCCATC	8920	False	NA	NA	False	NA	NA	NA	100364596	100362791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_100363723_100364470
49996	chr7	+	2422	17	NIC	ENSMUSG00000030924.17	novel	2492	20	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_2	10.6272056534161	36	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATTTCCTCCTCTTAG	NA	False	NA	NA	False	NA	NA	NA	119393341	119448162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_119393726_119398787_119398901_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525_119426600_119431893_119431999_119433486_119433625_119442464_119442558_119443070_119443288_119443481_119443670_119444605_119444725_119447954
49997	chr17	-	1954	6	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	6	1841	multi-exon	FALSE	canonical	3	20	junction_5	56.5954061739997	214	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATGTTGGGTATTGATT	NA	False	NA	NA	False	NA	NA	NA	37292123	37278245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37292031
49998	chr19	-	1436	15	NIC	ENSMUSG00000024878.10	novel	1929	15	NA	NA	-38	-511	combination_of_known_junctions	FALSE	canonical	3	7	junction_14	49.7256247331498	34	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCCTCTGGAGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	24938916	24897790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938680
49999	chr7	-	2001	1	ISM	ENSMUSG00000063317.8	ENSMUST00000046929.7	10198	16	63208	24	22770	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	30	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACATGATGCCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	121243268	121241267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_121241300_121243300
50000	chr18	-	2437	17	Intergenic	novelGene_4565	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACGGAGGACGCGTCTG	NA	False	NA	NA	False	NA	NA	NA	75420011	75151853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_75152054_75176147_75176339_75186049_75186102_75188350_75188446_75189700_75189835_75196168_75196252_75213280_75213399_75215434_75215579_75247860_75248042_75252179_75252361_75256528_75256653_75258492_75258608_75259893_75259987_75332229_75332337_75363057_75363241_75376353_75376469_75419690
50001	chr2	-	2473	12	NIC	ENSMUSG00000015647.10	novel	11388	79	NA	NA	-255	-7	intron_retention	FALSE	canonical	3	256	junction_10	30.5830396469937	194	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGACTTGAGTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	179821691	179818172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179818558_179818680_179818987_179819066_179819201_179819283_179819438_179819527_179819693_179819801_179819998_179820069_179820216_179820307_179820423_179820513_179820685_179820802_179820934_179821044_179821322_179821398
50002	chr11	-	1693	3	NNC	ENSMUSG00000085156.9	novel	1540	2	NA	NA	6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218	39	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGATCGGGTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	6478757	6475588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6475668_6476970_6478375_6478547
50003	chr8	-	1792	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38806	-4	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_5	54.8005660629188	128	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTCTGTTTATTGCTT	NA	False	NA	NA	False	NA	NA	NA	43633329	43582847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594341_43595725_43595759_43633233
50006	chr2	+	3002	9	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	-5772	-3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	88.4586767931784	2	149	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATATGTGTGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	128951819	128968511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128952132_128954561_128954734_128955420_128955648_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
50007	chr1	+	1567	8	NNC	ENSMUSG00000053332.14	novel	502	12	NA	NA	50	0	intron_retention	FALSE	non_canonical	0	0	junction_4	1925.33379030277	13	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160862807	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863375_160863552_160863815_160864118_160864150_160864389_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
50008	chr4	-	1498	10	NNC	ENSMUSG00000060288.14	novel	1288	10	NA	NA	0	-21	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	176.390209968806	86	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGGGCCTGGTTCTCAC	9629	False	NA	NA	False	NA	NA	NA	119177696	119164377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177267_119177365_119177431_119177605
50009	chr7	-	2283	3	NIC	ENSMUSG00000070822.6	novel	3709	7	NA	NA	46	-1027	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	13.5	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGCTGTGAACAGACAG	NA	False	NA	NA	False	NA	NA	NA	12514535	12506980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_12507518_12507876_12509586_12514498
50011	chr6	-	2956	8	NNC	ENSMUSG00000039159.17	novel	4657	7	NA	NA	-28666	-1679	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	150.998986346104	76	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGCTTTTGATATTGAT	NA	False	NA	NA	False	NA	NA	NA	30272468	30212966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30262145_30262223_30271826_30272090_30272265
50012	chr11	-	1979	7	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-7	825	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	103.237186452686	6	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAAGGCTTCAATTCCA	4396	False	NA	NA	False	NA	NA	NA	94544797	94537732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94538233_94538453_94538575_94538968_94539056_94540288_94540346_94540827_94540965_94541048_94541850_94544521
50013	chrX	-	1378	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	-297	23	-297	-23	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	163	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTTTTTTGTGGAACA	-1	True	NA	NA	False	NA	NA	NA	7765805	7760780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
50014	chr19	-	2235	7	ISM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	-24	-17	-24	17	intron_retention	FALSE	canonical	3	3081	junction_6	73.6985225240114	2	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	8690373	8684933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197
50015	chr14	-	1788	4	NIC	ENSMUSG00000002329.8	novel	1730	5	NA	NA	46	0	intron_retention	FALSE	canonical	3	428	junction_2	21.4009345590327	20	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGAAAGACAATTTTC	2409	False	NA	NA	False	NA	NA	NA	55897841	55895350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55896743_55896826_55896935_55897444_55897686_55897794
50016	chr7	-	2943	4	ISM	ENSMUSG00000030980.18	ENSMUST00000106549.9	1467	5	2272	-1701	2272	-10	3prime_fragment	FALSE	canonical	3	187	junction_3	203.176442203979	1	159	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCACATGCTGCTATTATT	NA	False	NA	-48	True	NA	NA	NA	118452564	118443022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111
50018	chr12	+	2589	4	NNC	ENSMUSG00000021096.12	novel	1103	3	NA	NA	-23140	-1184	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	192.101246453241	2	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAAGTGATATCCAGTTT	NA	False	NA	NA	False	NA	NA	NA	72781088	72834990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_72781169_72782668_72782779_72830456_72831311_72833445
50019	chr11	-	1351	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	-3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	1	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCAGTTGTTTATTT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
50020	chr11	-	627	2	ISM	ENSMUSG00000039976.5	ENSMUST00000207655.2	2855	12	17885	61679	11400	1827	internal_fragment	FALSE	canonical	3	7	junction_1	0	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCGGAGGGGAACAGCTCT	10017	False	NA	NA	False	NA	NA	NA	119101402	119099639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_119100195_119101330
50022	chr19	+	3538	8	ISM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	42597	270	-488	-6	3prime_fragment	FALSE	canonical	3	368	junction_1	19.5333310115854	1	217	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAACATTTGGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	53975907	54021292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
50023	chr4	-	2827	14	NNC	ENSMUSG00000028207.19	novel	2884	14	NA	NA	-21	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	184.7685262268	53	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAGATTGTCATTATTT	7	False	9669114	NA	False	NA	NA	NA	9669107	9575267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_9576974_9580219_9580294_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9610842_9610939_9635900_9635970_9639197_9639348_9668780
50024	chr18	+	2707	15	FSM	ENSMUSG00000024561.12	ENSMUST00000097530.5	2833	15	90	36	-25	11	multi-exon	FALSE	canonical	3	25	junction_10	20.6853245819645	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	74401335	74415767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
50025	chr11	+	2642	14	NNC	ENSMUSG00000020783.15	novel	12106	13	NA	NA	4	-9329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.3019064967114	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCTAAGGGGAAGCTCAA	NA	False	NA	NA	False	NA	NA	NA	72938702	72970814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72938756_72938796_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
50026	chr1	+	1909	6	FSM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	-3	3	-3	-3	multi-exon	FALSE	canonical	2	28	junction_1	8.97552226892675	158	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGTGGTGTCATCTTG	NA	False	NA	NA	False	NA	NA	NA	164103150	164115413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959_164110107_164113809_164113965_164115075
50027	chr2	-	2871	6	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	9658	-10	intron_retention	FALSE	non_canonical	0	0	junction_5	104.900714964198	7	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTCCCATTTCCTGTC	7384	False	NA	NA	False	NA	NA	NA	155972071	155965579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155971081_155971619
50028	chr9	+	769	5	ISM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	1365	0	403	0	3prime_fragment	FALSE	canonical	3	2998	junction_1	1134.17481015935	7	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119958274	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
50030	chr1	-	748	6	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2547.37650142259	14	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174626	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173715_16173909_16174588
50031	chr11	+	2184	3	NIC	ENSMUSG00000023723.18	novel	1404	5	NA	NA	-3	9	intron_retention	FALSE	canonical	3	279	junction_2	16.5	3	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGGGTAGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	88095246	88102342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88096186_88100678_88101057_88101475
50032	chr16	-	1097	3	NNC	ENSMUSG00000022858.17	novel	1376	2	NA	NA	48	579	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	323	59	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAGAAGTGTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	22084602	22064618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22065389_22077796_22078012_22084490
50033	chr13	-	1423	4	FSM	ENSMUSG00000021764.9	ENSMUST00000232101.2	716	4	-30	-677	0	-23	multi-exon	FALSE	canonical	3	49	junction_1	693.907454604399	78	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAGTGTTTGGAGACCT	NA	False	NA	NA	False	NA	NA	NA	114524616	114424353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_114425403_114453392_114453566_114487983_114488063_114524494
50034	chr8	+	2639	9	NNC	ENSMUSG00000003808.19	novel	1920	12	NA	NA	1	-7	intron_retention	FALSE	non_canonical	0	0	junction_1	273.804218375101	1	130	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGGACTCTGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	85583646	85595878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85583811_85587532_85587673_85587755_85587843_85587932_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594548_85594637
50035	chr1	+	1255	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	22	137	6	0	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	214	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	NA	NA	NA	37469272	37478068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
50036	chr17	-	1350	6	NNC	ENSMUSG00000073406.11	novel	1105	6	NA	NA	-157	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	198.021816979847	1251	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTTCCTGCATTGAGC	NA	False	NA	NA	False	NA	NA	NA	36395272	36391001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36391216_36391890_36392008_36392124_36392410_36394124_36394401_36394587_36394825_36395051
50038	chr10	-	1476	10	Antisense	novelGene_ENSMUSG00000020085.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	185	5	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGTGCCCATCACTGTC	NA	False	NA	-15	True	NA	NA	NA	61574432	61551082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_61551129_61561631_61561833_61562142_61562258_61563420_61563542_61563903_61564007_61568106_61568210_61570053_61570208_61571235_61571434_61572357_61572536_61574175
50039	chr14	+	1004	9	NNC	ENSMUSG00000022111.10	novel	903	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2073.6511278419	2436	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTGTGTTGTTTTTGCT	139	False	NA	NA	False	NA	NA	NA	101891451	101933559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101911571_101911695_101928007_101928084_101932594_101932654_101933337
50040	chr7	+	2063	5	NIC	ENSMUSG00000042289.12	novel	1899	6	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	12	junction_1	31.0885831134196	2	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGTCTACCTTTTACC	1883	False	NA	NA	False	NA	NA	NA	127399774	127402972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127399887_127400298_127400419_127400632_127401286_127401407_127401571_127401957
50041	chr2	-	2382	2	FSM	ENSMUSG00000050619.15	ENSMUST00000146243.2	2894	2	16	496	16	-496	multi-exon	FALSE	canonical	2	2	junction_1	0	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCATTATCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	121001590	120996117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_120997200_121000290
50042	chr6	-	1070	7	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2185.89687288511	3	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471709	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438269_125439308_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
50043	chr8	+	2011	5	ISM	ENSMUSG00000031570.18	ENSMUST00000133117.8	2099	6	203	0	55	0	3prime_fragment	FALSE	canonical	3	39	junction_1	16.7238602003246	61	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	26210293	26214914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26210403_26210581_26210673_26211200_26211265_26211688_26212628_26214106
50044	chr11	+	1814	10	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	24	-84	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	406.970772754682	1	97	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGTACCTCATGAACCCC	NA	False	NA	NA	False	NA	NA	NA	4823974	4844116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839536_4839565_4839891_4839987_4841402_4841487_4843119
50045	chr4	+	526	5	Antisense	novelGene_ENSMUSG00000028568.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGACGCACGGCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	108675410	108690815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_108675442_108676332_108676528_108683287_108683410_108687713_108687781_108690704
50046	chr2	+	2904	20	NNC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	34.216031945643	107	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTTTATGTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	32126688	32145015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32126829_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
50047	chr11	+	1511	9	NNC	ENSMUSG00000059552.14	novel	1771	11	NA	NA	-1805	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1017.70918457829	1	67	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGAGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	69477715	69482697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69477767_69478197_69478459_69479189_69479374_69479451_69479555_69479978_69480077_69480398_69480536_69480640_69480689_69481481_69481589_69482175
50048	chr19	-	1253	6	NIC	ENSMUSG00000024997.8	novel	1478	7	NA	NA	56	-27	combination_of_known_splicesites	FALSE	canonical	2	9	junction_4	303.346930098196	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAAATATTTGCGTTTT	1503	False	NA	NA	False	NA	NA	NA	60862938	60852515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60861565_60861702_60862869
50050	chr16	+	939	8	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-36	50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1777.05315575178	1	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTTTATGATCTCTAAC	NA	False	NA	NA	False	NA	NA	NA	84571237	84619824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603754_84606233_84606385_84609786_84609987_84612056_84612157_84618156_84618191_84619674
50052	chr9	-	506	1	Antisense	novelGene_ENSMUSG00000032294.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGCTAGAAGAGGGGCTC	NA	False	NA	NA	False	NA	NA	NA	59586653	59586147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_59586100_59586700
50054	chr7	+	1733	7	NIC	ENSMUSG00000042289.12	novel	1828	7	NA	NA	-4	-5	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	28.5389597256491	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTCCTTGTCTACCTTTT	1922	False	NA	NA	False	NA	NA	NA	127399813	127402969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127399887_127400298_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
50055	chr17	+	1711	5	NNC	ENSMUSG00000007038.6	novel	2474	6	NA	NA	58	-290	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	50.9282583640949	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGATGGACGCTAAGCATG	8042	False	NA	NA	False	NA	NA	NA	35150347	35154607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35150419_35151597_35151805_35152978_35153162_35153258_35153482_35153580
50056	chr9	+	2233	8	NNC	ENSMUSG00000032123.6	novel	2050	8	NA	NA	-3	-299	intron_retention	FALSE	non_canonical	0	0	junction_1	98.4282604183351	4	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCCTCTAGTGTAGCAT	3799	False	NA	NA	False	NA	NA	NA	44238166	44244892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44238905_44239172_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
50059	chr10	+	3632	21	ISM	ENSMUSG00000019971.11	ENSMUST00000219765.2	7985	52	52094	4	-71	-4	3prime_fragment	FALSE	canonical	3	27	junction_1	7.09647799968407	29	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACAGTCATAATTGTTC	9722	False	NA	NA	False	NA	NA	NA	100376244	100409513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_100376333_100377411_100377679_100378278_100378387_100379103_100379304_100380778_100380993_100382236_100382375_100384589_100384812_100385114_100385238_100387225_100387372_100387678_100387835_100390272_100390397_100393932_100394068_100395466_100395554_100397101_100397267_100397970_100398094_100399127_100399301_100402872_100403015_100403942_100404017_100404676_100404772_100407924_100408005_100408741
50061	chr6	+	3223	3	NNC	ENSMUSG00000046323.9	novel	833	4	NA	NA	16	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	471.5	29	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCTCGACTCTTTGTAAT	696	False	NA	NA	False	NA	NA	NA	122603384	122607228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122605820_122605867_122606296_122606868
50062	chr11	-	1373	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	25	1	9	-1	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	1330	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	100331890	100320179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
50063	chr2	-	2048	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	27	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	19.790149064623	118	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	59712864	59682707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
50065	chr9	-	3896	19	Antisense	novelGene_ENSMUSG00000025898.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	56	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAAACGCCTCCATAGT	NA	False	NA	NA	False	NA	NA	NA	3479271	3404114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_3404188_3409962_3410075_3411326_3411452_3417868_3417981_3418653_3418774_3421283_3421383_3428672_3428783_3430436_3430748_3430813_3431087_3441053_3441145_3442959_3443046_3447234_3447354_3450013_3450150_3454537_3454751_3456730_3456846_3458728_3458888_3460048_3460130_3475478_3475581_3477812
50066	chr3	+	3783	19	FSM	ENSMUSG00000053819.17	ENSMUST00000199300.5	5524	19	315	1426	14	-11	multi-exon	TRUE	canonical	2	3	junction_9	3.34119443416775	15	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCTGCTGACAATGTGT	NA	False	NA	NA	False	NA	NA	NA	126390970	126638549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_126391154_126392714_126392810_126478308_126478369_126523055_126523111_126561162_126561229_126564433_126564507_126574008_126574112_126577603_126577688_126589012_126589108_126590486_126590610_126591350_126591435_126591886_126591930_126595372_126595411_126604287_126604337_126628222_126628299_126631911_126632007_126633785_126634015_126635133_126635223_126636406
50067	chr5	-	3519	5	FSM	ENSMUSG00000037007.18	ENSMUST00000049393.15	6470	5	20	2931	-20	2034	multi-exon	TRUE	canonical	3	14	junction_2	1.4790199457749	38	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGAGAACATTTTTCTTT	1731	False	NA	NA	False	NA	NA	NA	138153986	138140894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138143975_138148868_138148996_138149466_138149559_138151106_138151232_138153891
50068	chr9	-	2572	4	NNC	ENSMUSG00000066319.7	novel	703	3	NA	NA	87	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.23609564462324	113	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAATGATTCATTTT	NA	False	NA	NA	False	NA	NA	NA	110819564	110814014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110815457_110815792_110816383_110818512_110818732_110819243
50069	chr7	-	1846	10	NIC	ENSMUSG00000025494.9	novel	1612	10	NA	NA	-119	-1	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	41.7703894176098	298	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCCGGGCTTATTTCTGT	NA	False	NA	NA	False	NA	NA	NA	140676771	140671090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676472
50070	chr6	-	2832	13	NIC	ENSMUSG00000056698.12	novel	2164	13	NA	NA	17	-1	intron_retention	FALSE	canonical	2	5	junction_12	16.1339875900397	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATCTCTGGTATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	72575308	72542917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72574606
50071	chr1	-	1263	5	NNC	ENSMUSG00000042111.10	novel	1705	5	NA	NA	300	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.501082246012	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCACAGAGCTCTCATTT	7504	False	NA	NA	False	NA	NA	NA	34478453	34475756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_34476583_34476834_34476940_34477930_34478014_34478123_34478228_34478308
50072	chr7	+	1737	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37454	-20	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	107.755437797821	115	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACACACTGTATTCATAAAA	3015	False	NA	NA	False	NA	NA	NA	81862435	81956607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81862770_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
50073	chr4	+	1424	9	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-25	-2	at_least_one_novel_splicesite	TRUE	canonical	3	50	junction_8	282.366755081047	1303	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTAGTGTGTCTGGAGC	NA	False	NA	NA	False	NA	NA	NA	117407536	117531476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_117407560_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506670_117530937
50074	chr17	+	2928	16	NNC	ENSMUSG00000041354.17	novel	3252	18	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_3	43.5872560376183	8	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	3631	False	NA	NA	False	NA	NA	NA	34148952	34156661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34149019_34149218_34149416_34150699_34150762_34150993_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152952_34154094_34154230_34154333_34154631_34154713_34155008_34155836_34155952_34156038
50077	chr2	-	2273	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	572	294	487	-291	multi-exon	FALSE	canonical	3	54	junction_1	0	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAACAGAAGGATTCCAAC	NA	False	NA	NA	False	NA	NA	NA	92289567	92283402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_92285120_92289011
50079	chr16	-	1722	11	FSM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	247	5	247	-5	multi-exon	FALSE	canonical	2	3	junction_9	86.6256313108309	1219	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATCATTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	38253260	38216483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38237421_38237624_38253165
50081	chr5	+	1683	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	-23	0	-3	0	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	490	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	NA	NA	NA	114582343	114598652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
50082	chr15	+	2834	9	FSM	ENSMUSG00000022270.17	ENSMUST00000022881.15	3248	9	408	6	408	-6	multi-exon	FALSE	canonical	3	25	junction_6	4.98591766879478	87	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTATTCCTTTTTATGTG	147	False	NA	NA	False	NA	NA	NA	25843673	25973767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_25843699_25889566_25889674_25895198_25895230_25964309_25964437_25966718_25966804_25968492_25968631_25969881_25969947_25970183_25970311_25971638
50083	chr5	-	2487	4	NNC	ENSMUSG00000042190.13	novel	2882	3	NA	NA	-11329	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.68178700572909	1	48	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGACGTCTTGCTTGTT	5615	False	NA	NA	False	NA	NA	NA	113799816	113750421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113751049_113751445_113753002_113754588_113754678_113799601
50085	chr15	+	1445	3	NIC	ENSMUSG00000063236.7	novel	1111	4	NA	NA	53	0	intron_retention	FALSE	canonical	1	74	junction_1	107	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	76832781	76834932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76833120_76833267_76833891_76834448
50087	chr10	+	2117	12	ISM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-11	34614	-11	-34614	5prime_fragment	FALSE	canonical	3	46	junction_9	6.71497647731614	29	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCATGTGCACACTCCT	932	False	NA	NA	False	NA	NA	NA	58333758	58377452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619
50089	chr12	+	3843	14	Antisense	novelGene_ENSMUSG00000021179.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	122	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCCTTGTAGTTAGTGC	NA	False	NA	NA	False	NA	NA	NA	100091738	100126060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_100091993_100092461_100092530_100095551_100095692_100096615_100097539_100098405_100098796_100100614_100100792_100103916_100104036_100106261_100106397_100108150_100108557_100109996_100110445_100112124_100112288_100116075_100116312_100117471_100117594_100125798
50090	chr1	-	4623	26	NNC	ENSMUSG00000026313.17	novel	8100	27	NA	NA	-101	555	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_11	20.3997647045254	30	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATTCCACTGTATTCC	NA	False	NA	NA	False	NA	NA	NA	92076216	91859923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_91861109_91861377_91861520_91862323_91862409_91873621_91873756_91875139_91875259_91883011_91883110_91883763_91883884_91886076_91886165_91887132_91887189_91889174_91889283_91892501_91892549_91896059_91896181_91898664_91898799_91900421_91900609_91903160_91903416_91909750_91909990_91912099_91912296_91912382_91912500_91915266_91915380_91919204_91919337_91923778_91923901_91929876_91929998_91940390_91940542_91957676_91957919_91982622_91982695_92075977
50091	chr12	-	1479	6	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	437	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6199.76743434784	3	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGGAATGTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	110660289	110657463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658079_110658547_110658882_110659037_110659197_110659566_110659602_110659745_110659937_110660144
50092	chr16	+	4154	1	Intergenic	novelGene_3582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	57	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGATTGGGGTGGGGAG	NA	False	NA	NA	False	NA	NA	NA	8665406	8669560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_8665400_8669600
50093	chr17	-	2787	3	NNC	ENSMUSG00000015120.16	novel	2755	4	NA	NA	32	613	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTATCCAACCCCACCTCA	4779	False	NA	NA	False	NA	NA	NA	25492325	25484927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25487588_25488171_25488268_25492294
50094	chr3	+	1543	1	NIC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	2277	558	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2283	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCACAGTCTACAATGC	NA	False	NA	NA	False	NA	NA	NA	102953134	102954677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102953100_102954700
50095	chr4	-	1805	9	Antisense	novelGene_ENSMUSG00000039768.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTTGGCGGCAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	152065679	152057271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_152057516_152057937_152058301_152058651_152058767_152061400_152061563_152062455_152062526_152063728_152063786_152063899_152064042_152064372_152064505_152065159
50096	chr4	+	4420	3	FSM	ENSMUSG00000051351.15	ENSMUST00000130658.2	791	3	-33	-3596	4	-98	multi-exon	FALSE	canonical	3	10	junction_1	4	12	80	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCAAAACCACTGAGTTAT	NA	False	NA	NA	False	NA	NA	NA	136013381	136021155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_136013793_136014499_136014627_136017273
50098	chr11	-	2232	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1950.37633291629	1	117	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAATTGTACTTTATTTT	9654	False	NA	NA	False	NA	NA	NA	106679320	106672367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106675216_106675351_106675705_106675879_106675961_106676123_106676220_106676359_106676892_106676959_106677051_106677186_106677696_106677901_106679098
50100	chr7	+	2844	13	FSM	ENSMUSG00000054065.13	ENSMUST00000066873.5	2848	13	-7	11	-7	-8	multi-exon	TRUE	canonical	0	0	junction_3	30.7431112428279	8	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGAACACAGCCCCAGCT	NA	False	NA	NA	False	NA	NA	NA	140659665	140670412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140660015_140662254_140662335_140662467_140663100_140663175_140663300_140663967_140664173_140667548_140667724_140668196_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
50103	chr16	+	1036	9	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	-9	-1	combination_of_known_splicesites	FALSE	canonical	3	44	junction_5	218.732963622313	49	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTAGATGACTTTTTA	NA	False	NA	NA	False	NA	NA	NA	13637198	13653314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13649470_13649525_13650200_13650299_13652544_13652659_13652998
50105	chrX	+	2505	13	FSM	ENSMUSG00000031397.12	ENSMUST00000010127.12	2473	13	-35	3	-35	-3	multi-exon	FALSE	canonical	2	11	junction_9	3.8151743807532	50	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACTTTATGCAGTTTGT	6441	False	NA	NA	False	NA	NA	NA	73220829	73252103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73221030_73225389_73225505_73234827_73234926_73237124_73237317_73237399_73237528_73240589_73240784_73241245_73241411_73244203_73244361_73246136_73246268_73248479_73248564_73249479_73249577_73249950_73250071_73251279
50106	chr7	-	1547	11	NNC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	125.333993792586	559	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	NA	False	NA	NA	NA	126817597	126813618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815179_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817496
50107	chr16	+	2957	21	NNC	ENSMUSG00000022761.13	novel	3394	21	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	28.2858180012529	2	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	17326837	17344197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342025_17342260_17342322_17343102_17343209_17343286_17343368_17343540
50108	chr14	-	1440	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-26	-1047	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2320.5601122089	4	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTATTGTTTTATGTATT	NA	False	NA	NA	False	NA	NA	NA	36857255	36843827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847277_36847858_36848048_36849543_36849653_36852595_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
50110	chr15	+	805	7	ISM	ENSMUSG00000056851.15	ENSMUST00000229918.2	1463	15	12971	-241	56	1	3prime_fragment	FALSE	canonical	3	280	junction_4	113.996223134317	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGAGCTTTTTCTTTGT	1487	False	NA	NA	False	NA	NA	NA	102392644	102407317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
50111	chr7	+	2248	19	FSM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	-5	12	-5	-8	multi-exon	FALSE	canonical	3	61	junction_1	24.7224719088515	272	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCACTGAGATGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	18915089	18940395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
50113	chr4	-	1735	5	NNC	ENSMUSG00000040842.18	novel	3244	4	NA	NA	409	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.654237698462	77	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCAGACATTTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	140866629	140840331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_140840871_140842375_140843176_140845837_140846093_140847634_140847685_140866538
50114	chr9	-	1338	5	NNC	ENSMUSG00000001348.16	novel	1349	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	83.7048385698222	374	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	9073	False	NA	NA	False	NA	NA	NA	22042950	22038026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042885
50115	chr14	+	2326	1	ISM	ENSMUSG00000040717.7	ENSMUST00000035336.5	8280	13	66020	0	17196	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCAGTGGCTCCTTATT	NA	False	NA	NA	False	NA	NA	NA	26826917	26829243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_26826900_26829200
50116	chr5	-	1112	1	Antisense	novelGene_ENSMUSG00000070697.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCCTCACTCTGCACG	NA	False	NA	NA	False	NA	NA	NA	88703933	88702821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_88702800_88703900
50117	chr11	-	2490	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111646	-42	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	32.3412922387691	175	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTCTGACCTCACCCTT	1374	False	NA	NA	False	NA	NA	NA	76178248	76148065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178031
50118	chr2	+	1325	1	ISM	ENSMUSG00000000305.13	ENSMUST00000000314.13	6388	16	455618	0	4140	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTCTCCCGACTTGCTT	NA	False	NA	NA	False	NA	NA	NA	179539841	179541166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179539800_179541200
50119	chr14	-	2588	10	NNC	ENSMUSG00000022003.8	novel	3588	10	NA	NA	3	-952	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	14.4050745516816	1	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATCTT	NA	False	NA	NA	False	NA	NA	NA	76024474	75998508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012538_76014435_76014567_76024364
50120	chr12	-	1276	4	NNC	ENSMUSG00000041359.15	novel	760	4	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	893.888260479028	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105189040	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183321_105183364_105183961_105184966_105185089_105188791
50121	chr11	-	1330	8	NIC	ENSMUSG00000017176.18	novel	1399	9	NA	NA	4	-12	combination_of_known_junctions	FALSE	canonical	2	4	junction_5	192.879998645663	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAAGCTGGGCGGTGGAT	NA	False	NA	NA	False	NA	NA	NA	100331911	100320196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100331010_100331081_100331654_100331754_100331869
50122	chr8	+	1252	7	NNC	ENSMUSG00000031533.5	novel	1515	7	NA	NA	5	-185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	280.735937611604	9	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCTGTGTTGATCATTG	NA	False	NA	NA	False	NA	NA	NA	22901418	22919496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917872_22919196
50123	chr2	+	1425	5	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9573	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	186.483745940497	55	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	NA	False	NA	NA	NA	162873935	162888061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162874156_162875154_162875224_162882546_162882635_162884610_162884720_162887122
50128	chr8	-	1180	3	NNC	ENSMUSG00000037070.11	novel	1695	2	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.5	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAATTTTCTGTCTTGATT	NA	False	NA	NA	False	NA	NA	NA	79235524	79231902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_79232633_79233139_79233493_79235427
50129	chr14	-	2644	1	Antisense	novelGene_ENSMUSG00000022070.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGAAGCCTGAATAAT	NA	False	NA	NA	False	NA	NA	NA	99312262	99309618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_99309600_99312300
50130	chr14	+	2619	11	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	-30	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	124.951030407916	1	90	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACCGTTATGTCGTTTTC	NA	False	NA	NA	False	NA	NA	NA	99283859	99311966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99294174_99294257_99297675_99297738_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
50131	chr7	+	2528	2	Genic_Genomic	ENSMUSG00000077886.3_ENSMUSG00000077815.3_ENSMUSG00000077903.3	novel	84	1	NA	NA	-770	172	multi-exon	FALSE	canonical	0	0	junction_1	0	50	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGCTGCTTTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	3266529	3269687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_3266594_3267223
50132	chr9	+	2278	9	NIC	ENSMUSG00000032078.18	novel	2984	14	NA	NA	-776	118	intron_retention	FALSE	canonical	3	619	junction_3	47.0684342208236	5	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCGCCTCTGCGTTCATG	NA	False	NA	NA	False	NA	NA	NA	46185978	46192900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
50133	chr1	+	531	1	ISM	ENSMUSG00000057715.14	ENSMUST00000171690.9	6158	8	187170	6	21969	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTTTAAAAAATTAACATT	NA	False	NA	NA	False	NA	NA	NA	11671498	11672029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_11671500_11672000
50134	chr10	-	1571	2	FSM	ENSMUSG00000061983.8_ENSMUSG00000077440.3	ENSMUST00000219783.2	488	2	-1074	-9	21	2	multi-exon	FALSE	canonical	3	3174	junction_1	0	7	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23662966	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_23661172_23661473
50135	chr3	+	2276	2	ISM	ENSMUSG00000027671.15	ENSMUST00000153779.2	1112	6	4940	-2	4940	2	3prime_fragment	FALSE	canonical	3	1597	junction_1	0	4	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCGTGCTGGATTTGTCT	4531	False	NA	NA	False	NA	NA	NA	32777655	32781119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_32779483_32780670
50136	chr9	-	2747	13	ISM	ENSMUSG00000041268.18	ENSMUST00000118163.8	10614	44	119653	3	-80	3	3prime_fragment	FALSE	canonical	3	15	junction_9	4.83835945566493	34	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCCCCTAAACTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	54289257	54272444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_54273912_54274837_54275056_54276493_54276547_54277155_54277248_54281936_54282015_54282562_54282691_54282789_54282851_54283506_54283646_54285997_54286120_54286200_54286288_54287058_54287122_54288191_54288310_54289136
50137	chr18	+	1888	14	Antisense	novelGene_ENSMUSG00000024501.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCCTCGCTGCTACTGC	NA	False	NA	NA	False	NA	NA	NA	43457247	43526118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_43457492_43458796_43458953_43461389_43461568_43462753_43462926_43465935_43466079_43466945_43467102_43475305_43475428_43478170_43478238_43486941_43487027_43487807_43487869_43491297_43491464_43494026_43494211_43496566_43496657_43526054
50138	chr19	+	1374	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	-19	-2	-19	2	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	1093	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTAGCATGTTTCCCA	3673	False	NA	NA	False	NA	NA	NA	45549034	45566728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
50140	chr16	+	4369	18	ISM	ENSMUSG00000022672.9	ENSMUST00000023352.9	12647	86	160683	13	160683	-13	3prime_fragment	FALSE	canonical	3	60	junction_1	11.7473401244707	2	82	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGACAAATATTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	15616435	15660086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_15617918_15623785_15623961_15625897_15626092_15627459_15627656_15628568_15628715_15633755_15633968_15634434_15634523_15634614_15634759_15647479_15647685_15649134_15649203_15651539_15651761_15652010_15652104_15653015_15653106_15653753_15653826_15653895_15654098_15655826_15656016_15656948_15657089_15659634
50143	chr9	-	4591	23	ISM	ENSMUSG00000032462.15	ENSMUST00000035037.14	6478	24	17712	1789	17550	-42	3prime_fragment	FALSE	canonical	3	157	junction_2	25.4610381329968	60	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTCTCAGTCAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	99004428	98920495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_98921904_98922973_98923107_98924576_98924723_98926797_98926922_98928599_98928768_98934357_98934437_98936023_98936134_98937394_98937574_98942237_98942338_98943783_98943928_98944889_98945012_98946072_98946262_98947612_98947664_98952293_98952425_98953400_98953498_98955631_98955884_98970657_98970736_98972202_98972374_98975095_98975276_98976492_98976717_98983227_98983454_98987583_98987771_99004336
50145	chr17	-	1843	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	15	-3	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	22.0056810846654	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTATCTTCTCTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	36290176	36283435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018
50146	chr15	-	2737	10	NNC	ENSMUSG00000022476.9	novel	2542	6	NA	NA	-2	10425	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	159	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAGAGAAGAGACCTCAG	NA	False	NA	NA	False	NA	NA	NA	81799332	81788804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81790136_81791618_81791730_81793687_81793849_81794042_81794114_81794610_81794721_81796083_81796181_81796384_81796560_81797303_81797338_81798414_81798553_81798823
50149	chr12	+	2283	2	FSM	ENSMUSG00000066438.7	ENSMUST00000153762.2	956	2	-28	-1299	-28	-5	multi-exon	FALSE	canonical	3	14	junction_1	0	66	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGATTACTGGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	80768477	80770983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80768870_80769092
50151	chr15	+	1706	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-29	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	779.832656550251	1	79	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTGTTGGAGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	78959418	78978587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968488_78969782_78969908_78970633_78970805_78973663_78974000_78977526_78977618_78978400
50152	chr15	-	2241	8	FSM	ENSMUSG00000037487.8	ENSMUST00000228368.2	2953	8	166	546	166	-15	multi-exon	FALSE	canonical	3	850	junction_6	55.1535888890917	145	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTCATTTTAGCTTT	5899	False	NA	NA	False	NA	NA	NA	37979112	37968117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37968750_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265
50153	chrX	+	1089	1	Intergenic	novelGene_3993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTGTTTTTTGAGACA	NA	False	NA	NA	False	NA	NA	NA	100565880	100566969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_100565900_100567000
50154	chrX	+	1228	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5605.09585605416	4	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060983_36061400_36061530_36062039
50155	chrX	+	1182	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5382.46789741162	2	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059329	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059459_36060488_36060983_36061388_36061530_36062039
50156	chrX	-	1598	5	NNC	ENSMUSG00000031422.17	novel	1996	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1551.48515542367	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	135642027	135633690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135633874_135634079_135635251_135636294_135636372_135640553_135640644_135641950
50157	chr11	+	2131	1	FSM	ENSMUSG00000086859.5	ENSMUST00000182811.2	2153	1	0	22	0	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	366	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATGGAGCTTGAAC	894	False	NA	NA	False	NA	NA	NA	116967627	116969758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116967600_116969800
50159	chr17	-	1307	6	FSM	ENSMUSG00000073406.11	ENSMUST00000173080.10	1138	6	-104	-65	-104	-9	multi-exon	FALSE	canonical	3	116	junction_4	160.992670640623	1226	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCTTCCAGAAACTATGT	NA	False	NA	NA	False	NA	NA	NA	36395219	36391015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394858_36395051
50160	chr15	-	1760	14	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	7	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	830.814464580518	1	81	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGGTTTCTTCCTTCGT	2752	False	NA	NA	False	NA	NA	NA	77855006	77843211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843317_77843711_77843977_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847518_77848217_77848349_77849113_77849216_77850337_77850392_77851455_77851640_77852375_77852422_77852656_77852783_77854889
50161	chr6	+	1377	7	NNC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	-40	572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	916.794172950262	36	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGCTTTTGCTGTACTG	578	False	NA	NA	False	NA	NA	NA	88061504	88080941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076345_88080700
50162	chr14	+	2165	10	Antisense	novelGene_ENSMUSG00000021938.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACACACGTCTCCACATGT	NA	False	NA	NA	False	NA	NA	NA	56959913	57015661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_56960738_56962762_56962933_56965976_56966037_56986293_56986401_56996086_56996172_56999290_56999490_57001606_57001702_57009161_57009463_57015246_57015472_57015562
50163	chr14	-	2588	7	FSM	ENSMUSG00000022179.6	ENSMUST00000022786.6	2670	7	82	0	82	0	multi-exon	FALSE	canonical	3	19	junction_6	4.10960933531265	63	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTGTTGGGCTTAGT	NA	False	NA	NA	False	NA	NA	NA	54843368	54821119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54822164_54822435_54822549_54823108_54823213_54823392_54823455_54828578_54828897_54832570_54833409_54843259
50164	chr3	-	2722	2	ISM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	12119	9	-1487	-9	3prime_fragment	FALSE	canonical	0	0	junction_1	0	4	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCACACTGTCATCTGTG	NA	False	NA	NA	False	NA	NA	NA	88305514	88301458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88301878_88303211
50165	chr10	+	2968	1	Antisense	novelGene_ENSMUSG00000036099.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTTCAACAGGATGCCT	3023	False	NA	NA	False	NA	NA	NA	93836954	93839922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_93837000_93839900
50166	chr5	+	1409	6	Antisense	novelGene_ENSMUSG00000025337.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCACGCCTGCGCGCCGTG	NA	False	NA	NA	False	NA	NA	NA	130274581	130284373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_130274762_130274892_130275301_130277124_130277291_130279653_130279856_130282779_130282909_130284049
50167	chr5	-	1752	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	16	junction_6	105.262936089992	15	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5313	False	NA	NA	False	NA	NA	NA	143314967	143302243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314201_143314326_143314432
50168	chr14	+	1625	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	-12	6	-12	-6	multi-exon	FALSE	canonical	3	46	junction_1	100	913	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAATTGCCTGAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	61835683	61843389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_61835796_61837242_61837345_61841978
50169	chr3	+	1706	7	FSM	ENSMUSG00000015750.16	ENSMUST00000056710.10	1601	7	-88	-17	-2	17	multi-exon	FALSE	canonical	3	108	junction_6	85.2670641116617	295	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGTGGGGGGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	95801278	95804774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548_95803673_95804005
50173	chr10	-	2792	13	FSM	ENSMUSG00000006342.16	ENSMUST00000077610.6	2275	13	-13	-504	-2	0	multi-exon	FALSE	canonical	1	3	junction_12	20.894410470001	107	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTCCCGTCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	75479827	75472540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75479707
50174	chrX	-	3124	3	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	63.5	33	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAAAGAGATCTGTGGT	1161	False	NA	NA	False	NA	NA	NA	83486715	83467138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_83470038_83473568_83473652_83486573
50176	chr15	+	1845	12	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-15	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	683.592793582566	1	85	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959432	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959527_78961051_78961242_78962273_78962354_78963192_78963253_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
50178	chr2	+	1268	10	NNC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	961.844652634961	1	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8610	False	NA	NA	False	NA	NA	NA	61542100	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_61542218_61550790_61550892_61591343_61591443_61594188_61594252_61595222_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
50179	chr15	+	1153	11	NNC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	-41	-2966	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	759.568594664103	2	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCGGTGTCCTGGATGTG	NA	False	NA	NA	False	NA	NA	NA	84079958	84098502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84079974_84084015_84084081_84084493_84084625_84084830_84084919_84086430_84086587_84088202_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
50180	chr1	+	2833	14	NNC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	7	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	181.468174137649	1	149	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAGTTTAAATGCTAAT	9775	False	NA	NA	False	NA	NA	NA	175708368	175736303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175708423_175708697_175708921_175710460_175710635_175715143_175715268_175716289_175716420_175719498_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729000_175731892_175731976_175733338_175733556_175735995
50181	chr8	+	1553	8	NNC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	8	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	78.3031784482727	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTTAATGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	96058919	96074127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154_96073316_96073504
50183	chr2	-	3844	14	NIC	ENSMUSG00000040272.15	novel	3950	15	NA	NA	18	-19	combination_of_known_junctions	FALSE	canonical	1	1	junction_9	8.30626768411882	1	86	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATTATCATTGGTGACA	NA	False	NA	NA	False	NA	NA	NA	93680266	93663830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678553_93680109
50184	chr9	+	464	1	Intergenic	novelGene_1114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTCTACCTGAGGCTAAG	NA	False	NA	NA	False	NA	NA	NA	76221465	76221929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_76221500_76221900
50185	chr9	+	731	1	Intergenic	novelGene_1115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGGTATGAGAGATCAT	NA	False	NA	NA	False	NA	NA	NA	76222235	76222966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_76222200_76223000
50189	chr7	+	1372	7	ISM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	386	715	-1	13	3prime_fragment	FALSE	canonical	3	1325	junction_5	56.2840020688729	2	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTGTTTGTAAACATT	NA	False	NA	NA	False	NA	NA	NA	131162336	131172906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
50190	chr9	-	1261	8	NNC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	19	1520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	769.284427641848	7	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCCGCTGGTTCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	21061219	21050728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21051118_21052311_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051_21061108_21061150
50193	chr1	-	1297	10	FSM	ENSMUSG00000026260.13	ENSMUST00000189503.7	1514	10	-14	231	-4	-231	multi-exon	FALSE	canonical	2	32	junction_8	396.495325583892	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGCCGGCTCTGTAGCC	NA	False	NA	NA	False	NA	NA	NA	92401493	92367231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398672_92398708_92401384
50194	chr7	+	2644	18	ISM	ENSMUSG00000030515.10	ENSMUST00000032728.9	3192	19	1353	233	1353	-233	3prime_fragment	FALSE	canonical	3	56	junction_8	7.82065404923306	15	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTCATGCCCAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	65295998	65341606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_65296070_65297225_65297417_65302007_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711_65325879_65327743_65327907_65332514_65332653_65333555_65333634_65333809_65333911_65336185_65336291_65338626_65338700_65339715_65339831_65340918
50195	chr7	+	1699	13	NNC	ENSMUSG00000030890.17	novel	1795	13	NA	NA	-16	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	93.8380697442852	40	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAAACAGGCTCGTGTG	NA	False	NA	NA	False	NA	NA	NA	105385861	105392121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390808_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
50196	chr8	+	1574	1	NIC	ENSMUSG00000034807.10	novel	3207	12	NA	NA	2648	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAAGTCTTTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	72075974	72077548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72076000_72077500
50198	chr18	-	2325	7	FSM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	351	1483	38	-1483	multi-exon	FALSE	canonical	3	238	junction_5	17.5823459438406	209	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTGTGAAAATGTTTAAC	NA	False	NA	NA	False	NA	NA	NA	25301713	25270576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_25272197_25273502_25273664_25274577_25274695_25282170_25282300_25284256_25284345_25291300_25291381_25301583
50199	chr6	+	2332	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	22	-3	-11	3	multi-exon	FALSE	canonical	3	46	junction_2	7.5	214	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTATTTTTGGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	49296229	49318519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_49296415_49310844_49311232_49316759
50201	chr9	+	1632	1	ISM	ENSMUSG00000063488.7	ENSMUST00000063980.8	4722	5	8508	8	-749	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATCTACCTGCTCTCGT	NA	False	NA	NA	False	NA	NA	NA	122726043	122727675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_122726000_122727700
50203	chr14	-	607	1	Genic_Genomic	ENSMUSG00000079197.11	novel	NA	NA	NA	NA	-577	-1086	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAACACCGCCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	55829147	55828540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_55828500_55829100
50204	chr16	-	1314	11	NIC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	6	62	combination_of_known_splicesites	FALSE	canonical	1	12	junction_9	525.988250819351	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAAACGTCATTTGATTT	9186	False	NA	NA	False	NA	NA	NA	91525505	91486351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91514291_91514364_91525445
50205	chr7	+	1074	5	NIC	ENSMUSG00000006333.15	novel	1347	5	NA	NA	-1	1	intron_retention	FALSE	canonical	3	206	junction_3	6193.80743162071	92	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1311	False	NA	NA	False	NA	NA	NA	3707038	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3707768_3708731_3708919_3709006_3709181_3709649
50206	chr4	-	1606	9	NIC	ENSMUSG00000029022.19	novel	1813	10	NA	NA	5	-31	intron_retention	FALSE	canonical	3	210	junction_4	27.3998175176405	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGCGTGCTAATAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	147952935	147945278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
50207	chr18	-	4306	17	FSM	ENSMUSG00000024331.12	ENSMUST00000039247.11	4630	17	321	3	245	-3	multi-exon	FALSE	canonical	2	2	junction_1	4.14907745770069	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCGTGTGCAGGTGGTGAA	NA	False	NA	NA	False	NA	NA	NA	20192290	20163692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_20165461_20165546_20165593_20166118_20166380_20167641_20167767_20168332_20168570_20171109_20171335_20174491_20174635_20174753_20175011_20176782_20176969_20177197_20177333_20178460_20178628_20179291_20179437_20180121_20180278_20181331_20181452_20183062_20183263_20184232_20184318_20192240
50208	chr8	+	1509	12	NNC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	60.0027547576976	6	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAGCTGTGATTTAAAAA	8866	False	NA	NA	False	NA	NA	NA	46428570	46449897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436586_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
50209	chr11	+	644	1	Antisense	novelGene_ENSMUSG00000078965.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTGTGGTCATGAGCC	NA	False	NA	NA	False	NA	NA	NA	20284838	20285482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20284800_20285500
50210	chr8	-	1649	1	Intergenic	novelGene_1704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGGTTTAATTGGTTATC	NA	False	NA	NA	False	NA	NA	NA	89779675	89778026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89778000_89779700
50211	chr14	-	2983	5	Intergenic	novelGene_647	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	4.63680924774785	33	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCCTGCAAATATTATGA	NA	False	NA	NA	False	NA	NA	NA	121035425	121006040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_121008256_121011802_121011957_121027263_121027672_121029923_121030020_121035315
50212	chr3	+	2896	5	NIC	ENSMUSG00000028048.12	novel	1978	12	NA	NA	-5	1040	intron_retention	FALSE	canonical	3	319	junction_1	18.7799760383234	2	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACAGTCACAGCATCATT	NA	False	NA	NA	False	NA	NA	NA	89110229	89114735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89110849_89111291_89111484_89111581_89112888_89113098_89113676_89114533
50214	chr19	+	1519	6	ISM	ENSMUSG00000024743.17	ENSMUST00000235479.2	2000	10	46076	29	31535	-29	3prime_fragment	FALSE	canonical	3	41	junction_2	11.0199818511647	4	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATTTGTGTTGTGTCT	8928	False	NA	NA	False	NA	NA	NA	10412916	10426333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10413050_10416515_10416787_10420191_10420362_10420740_10420856_10421348_10421549_10425703
50215	chr19	+	2585	1	ISM	ENSMUSG00000024743.17	ENSMUST00000076968.11	6624	12	59588	1577	45001	-1577	mono-exon	FALSE	NA	NA	NA	NA	NA	38	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGTGAAAAAGTAGGGCCT	232	False	NA	NA	False	NA	NA	NA	10426382	10428967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10426400_10429000
50218	chr2	-	975	4	FSM	ENSMUSG00000041975.18	ENSMUST00000124208.2	1597	4	18	604	7	-604	multi-exon	FALSE	canonical	3	72	junction_1	19.94993734326	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTCTAACTTAGAGG	NA	False	NA	NA	False	NA	NA	NA	70885909	70812006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_70812540_70823827_70823920_70848563_70848719_70885714
50219	chr14	+	2632	8	Fusion	ENSMUSG00000105868.2_ENSMUSG00000016831.13	novel	5350	10	NA	NA	2957	-803	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	73	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCCTTATTTGCCTCCG	NA	False	NA	NA	False	NA	NA	NA	52499224	52516778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_52501277_52502157_52502224_52503645_52503761_52506100_52506190_52506369_52506416_52512901_52512970_52516372_52516441_52516650
50220	chr12	+	1400	7	NNC	ENSMUSG00000020585.5	novel	1773	7	NA	NA	388	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	369.899273076093	53	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCCTTAAATGTGCC	NA	False	NA	NA	False	NA	NA	NA	8972051	8988728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8972295_8981598_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
50223	chr14	-	2689	4	FSM	ENSMUSG00000021848.17	ENSMUST00000118578.9	2144	4	-547	2	-132	-2	multi-exon	FALSE	canonical	2	4	junction_3	16.8720676464584	140	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTTGGGTCTAGTTTA	NA	False	NA	NA	False	NA	NA	NA	48903110	48895137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_48896784_48898755_48898908_48899900_48900117_48902435
50224	chr2	+	2949	1	Antisense	novelGene_ENSMUSG00000095362.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTGACCTGGAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	177479192	177482141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177479200_177482100
50225	chr17	+	1518	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	21.5	535	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4589	False	NA	NA	False	NA	NA	NA	35340458	35343790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35340775_35342028_35342636_35343195
50227	chr9	+	1713	1	FSM	ENSMUSG00000032092.6	ENSMUST00000216777.2	3574	1	1870	-9	1870	9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATCAAAACCCCAAAACA	NA	False	NA	NA	False	NA	NA	NA	44955863	44957576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44955900_44957600
50228	chr5	+	2383	4	NNC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-38	674	intron_retention	FALSE	non_canonical	0	0	junction_3	65.2380257212004	302	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCTTGTCAAGTACCT	NA	False	NA	NA	False	NA	NA	NA	101987982	101994950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_101988098_101989616_101989940_101991749_101993562_101994817
50229	chr11	-	1716	9	Antisense	novelGene_ENSMUSG00000020521.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTCGGCCTGGCCCCGCG	NA	False	NA	NA	False	NA	NA	NA	86387368	86375520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_86375624_86376884_86377115_86377479_86377559_86379892_86379992_86381181_86381336_86382502_86382664_86383986_86384052_86386052_86386154_86386644
50230	chr2	-	1840	5	NIC	ENSMUSG00000027404.17	novel	1161	7	NA	NA	-32	-23	intron_retention	FALSE	canonical	3	3295	junction_2	211.019548857446	21	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACTGTTATACATACAGT	NA	False	NA	NA	False	NA	NA	NA	130021286	130013577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130013864_130014522_130015680_130017249_130017362_130018934_130019087_130021153
50231	chr1	+	1785	5	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	-269	0	intron_retention	FALSE	canonical	3	4541	junction_4	622.874134556894	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160863320	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863375_160863552_160863585_160863777_160865118_160865564_160865843_160866026
50233	chr8	+	1073	4	NNC	ENSMUSG00000037296.8	novel	2663	4	NA	NA	2302	404	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	193.974225091892	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAAATGGAGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	26277916	26292556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_26278204_26282184_26282254_26283704_26283821_26291955
50234	chr2	+	2253	10	NNC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	609	1067	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	118.182533020371	2	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGGTGTAATACTGTG	NA	False	NA	NA	False	NA	NA	NA	69563177	69580959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579462_69579722
50236	chr6	+	2498	3	NNC	ENSMUSG00000007216.7	novel	4143	3	NA	NA	16	-1683	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	30	106	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACATGGTGTCACTGTTC	NA	False	NA	NA	False	NA	NA	NA	48579012	48598478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_48579055_48590111_48590248_48596158
50239	chr9	+	2069	9	FSM	ENSMUSG00000032114.10	ENSMUST00000215420.2	2128	9	29	30	29	-30	multi-exon	FALSE	canonical	1	5	junction_1	8.7740740252177	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGTATAGATCAATAAAGC	NA	False	NA	NA	False	NA	NA	NA	44308177	44314227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44308289_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
50241	chr19	+	2491	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	144.778758417417	2	101	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTTTTACTGTGTCTAG	NA	False	NA	NA	False	NA	NA	NA	38043480	38062862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058397_38059518_38059591_38060218_38060339_38061745
50242	chr2	-	3660	25	Antisense	novelGene_ENSMUSG00000057738.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	173	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGAGGTCCCTAGAAAC	NA	False	NA	NA	False	NA	NA	NA	29921422	29900722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29900805_29900918_29901118_29901195_29901343_29903455_29903554_29903683_29903844_29905596_29905730_29905942_29906079_29907204_29907316_29908375_29908583_29909938_29910055_29910432_29910555_29911199_29911328_29912443_29912549_29914911_29915073_29915531_29915607_29916019_29916223_29916526_29916836_29917034_29917142_29917640_29917660_29919630_29919687_29920011_29920208_29920329_29920378_29920454_29920608_29920684_29920828_29920976
50247	chr10	+	970	9	NNC	ENSMUSG00000025351.15	novel	1063	8	NA	NA	-21	-2	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	1704.70560141627	55	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAAAAAAGGAGATGGTCT	556	False	NA	NA	False	NA	NA	NA	128745769	128748682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128745828_128746263_128746341_128746533_128746645_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
50248	chr7	+	806	5	ISM	ENSMUSG00000053898.13	ENSMUST00000132376.2	673	6	3807	0	-140	0	3prime_fragment	FALSE	canonical	3	668	junction_1	33.380383460949	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28529435	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
50249	chr12	+	1289	7	FSM	ENSMUSG00000021286.9	ENSMUST00000021714.9	1308	7	19	0	-19	0	multi-exon	FALSE	canonical	3	470	junction_5	111.029525602677	1269	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	111780622	111794820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
50250	chr2	-	3249	1	Genic_Genomic	ENSMUSG00000036591.17	novel	NA	NA	NA	NA	2709	629	mono-exon	FALSE	NA	NA	NA	NA	NA	84	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTGGCATGTTATAAATA	NA	False	NA	NA	False	NA	NA	NA	20855349	20852100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_20852100_20855300
50253	chr8	+	1581	8	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	189	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	117.121949353689	11	5	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAGTGTATTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	47070665	47092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47070814_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953_47091178_47092131
50254	chr10	-	2089	13	NIC	ENSMUSG00000034758.13	novel	2015	14	NA	NA	11	0	intron_retention	FALSE	canonical	3	36	junction_9	14.8539183008689	176	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	NA	False	NA	NA	NA	81436723	81426737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
50255	chr5	-	1381	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	84.1580146425249	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5319	False	NA	NA	False	NA	NA	NA	143314961	143302243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
50256	chr6	-	1682	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3330.58270577387	2	87	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAAGGAAATTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	51446825	51439750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442160_51442222_51443121_51443203_51443289_51443385_51443474_51443686_51443885_51444033_51444164_51444267_51446650
50257	chr11	-	2130	11	NNC	ENSMUSG00000009073.17	novel	4720	16	NA	NA	67	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.144050672989	43	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTAAGCTGCTATAGTC	8912	False	NA	NA	False	NA	NA	NA	4799469	4715864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4716526_4744425_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
50258	chr7	+	1302	4	NNC	ENSMUSG00000011267.9	novel	1530	3	NA	NA	33	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	113.461692017859	6	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGCCTGGACTTTCT	760	False	NA	NA	False	NA	NA	NA	19311244	19314575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_19311554_19311741_19311886_19313537_19313970_19314158
50259	chr16	-	1451	1	Intergenic	novelGene_3643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCTCTTCCAGAGGTCT	NA	False	NA	NA	False	NA	NA	NA	34519630	34518179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_34518200_34519600
50261	chr2	-	2204	18	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	8	1165	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	278.896751368451	1	96	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAACAACCAAGTGGGAG	NA	False	NA	NA	False	NA	NA	NA	127673771	127649667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655837_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659389_127661128_127661285_127663594_127663812_127665853_127665980_127667026_127667071_127669220_127669287_127669366_127669418_127671357_127671497_127671597_127671658_127673639
50264	chr7	-	1565	10	NIC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	-2	3	intron_retention	FALSE	canonical	3	2113	junction_4	105.197990874116	5317	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAATTTCTTCTTAGGTG	NA	False	NA	NA	False	NA	NA	NA	27749475	27741137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27741346_27741525_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
50265	chr11	+	1123	1	Genic_Genomic	ENSMUSG00000017548.16	novel	NA	NA	NA	NA	3547	896	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAATATATATACACATAC	NA	False	NA	NA	False	NA	NA	NA	79890163	79891286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_79890200_79891300
50267	chrX	-	1166	9	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	964	303	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	145.838952272704	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	72160344	72151711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72160256
50268	chr13	-	2185	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_10	35.0697062651038	2	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTCTGGTTCACTCTTT	NA	False	NA	NA	False	NA	NA	NA	74210404	74185753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206547_74207560_74207689_74210302
50269	chr17	+	1974	9	NIC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	-42	-932	combination_of_known_splicesites	FALSE	canonical	1	4	junction_6	137.67783953854	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAATCTGTAGTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	17594791	17614229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17607325_17607836_17610229_17610327_17613716
50270	chr7	+	1067	10	FSM	ENSMUSG00000003549.10	ENSMUST00000003645.9	1375	10	308	0	-15	0	multi-exon	TRUE	canonical	3	315	junction_9	39.5851948880006	1260	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTGGCTCTGCGTGTTT	1019	False	NA	NA	False	NA	NA	NA	19079010	19090449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_19079122_19079530_19079643_19082325_19082542_19084085_19084190_19084617_19084718_19086553_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
50271	chr19	-	1543	3	ISM	ENSMUSG00000034108.7	ENSMUST00000236567.2	760	7	-9	7491	7	5566	5prime_fragment	FALSE	canonical	3	596	junction_2	13.5	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCATCCTTAGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	4889291	4882935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4884339_4888858_4888932_4889224
50272	chr19	-	2099	4	NNC	ENSMUSG00000034108.7	novel	540	3	NA	NA	6363	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	281.64319428825	6	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCATTCTGTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	4882884	4875400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4875693_4875797_4875902_4875971_4876344_4881553
50273	chr17	+	2635	9	NIC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	-5	7	intron_retention	FALSE	canonical	3	388	junction_5	37.8582883923719	3	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCCTTATCAACTTACTG	NA	False	NA	NA	False	NA	NA	NA	79244571	79254935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_79244631_79244919_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
50274	chr10	+	945	1	Intergenic	novelGene_3451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTGTCTTTTATAATA	NA	False	NA	NA	False	NA	NA	NA	61765623	61766568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_61765600_61766600
50275	chr4	+	1321	6	Antisense	novelGene_ENSMUSG00000028435.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	38	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGGTGGCCCGGAGCGCAG	NA	False	NA	NA	False	NA	NA	NA	41092735	41098177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41093423_41093938_41094000_41094265_41094402_41094705_41094842_41095147_41095272_41098000
50277	chr8	-	1857	9	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	22	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	351.023147384898	4	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCACAAACTATGGTCTT	NA	False	NA	NA	False	NA	NA	NA	31658769	31649500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_31650606_31651691_31651864_31653062_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
50278	chr9	+	3006	7	Antisense	novelGene_ENSMUSG00000025646.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	25	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTCCCCAGCCTGCGGGC	NA	False	NA	NA	False	NA	NA	NA	108892871	108903178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108894865_108895027_108895159_108896082_108896187_108898346_108898466_108900785_108900959_108901676_108901808_108902823
50279	chr11	+	2457	15	ISM	ENSMUSG00000018765.6	ENSMUST00000018909.4	2951	17	7273	3	110	-3	3prime_fragment	FALSE	canonical	3	970	junction_4	100.621968835066	548	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTGTGTTTCCCATGTT	NA	False	NA	NA	False	NA	NA	NA	69531088	69544120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69531154_69532107_69532180_69532266_69532416_69532872_69532967_69534663_69534781_69539630_69539802_69539975_69540055_69540553_69540664_69541288_69541376_69541669_69541899_69542064_69542263_69542348_69542550_69542803_69542900_69543035_69543134_69543429
50281	chr8	-	937	1	ISM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	10937	0	10937	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43749036	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43748100_43749000
50282	chr14	-	1655	9	NIC	ENSMUSG00000041028.17	novel	2573	9	NA	NA	-28	-1124	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	1786.95934131138	2	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATCTCTTATGC	NA	False	NA	NA	False	NA	NA	NA	36857124	36843904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856743
50284	chr17	+	1404	6	NNC	ENSMUSG00000046711.17	novel	1717	6	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2094.81898024626	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACAGTCTCTGGTGTAA	NA	False	NA	NA	False	NA	NA	NA	27775595	27782638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781411_27782051_27782236
50285	chr1	-	1344	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	-11	2	combination_of_known_junctions	FALSE	canonical	3	121	junction_9	50.3432661280975	531	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAGGTGTGTGGTTCAT	NA	False	NA	NA	False	NA	NA	NA	194813880	194786101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
50286	chr9	+	1352	8	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	7	-3	intron_retention	FALSE	canonical	3	832	junction_5	84.7158515875517	87	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTTGAAAATGAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	20914040	20920124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919196_20919789
50289	chr2	+	2144	6	NNC	ENSMUSG00000006418.18	novel	2502	6	NA	NA	-12	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	250.729655206559	12	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCAGTAAGCTGCAATGT	NA	False	NA	NA	False	NA	NA	NA	167345353	167358083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354542_167356585
50290	chr14	+	1412	10	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	171.417618697729	4	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGTAAACCCCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	54598297	54606088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54598375_54598778_54598894_54600790_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
50291	chr6	+	1653	8	Antisense	novelGene_ENSMUSG00000064792.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	226	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCCGGAACCCCAAGGAG	NA	False	NA	NA	False	NA	NA	NA	52523214	52617205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_52524052_52525804_52525959_52533424_52533500_52534763_52534896_52596959_52597084_52599835_52599943_52607170_52607335_52617145
50292	chr1	+	2382	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	2	0	2	0	multi-exon	FALSE	canonical	3	59	junction_7	9.96042167782067	128	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	NA	False	NA	NA	NA	183170326	183191020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
50293	chr2	+	1351	8	ISM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	6540	62	13	-62	3prime_fragment	FALSE	canonical	3	1013	junction_6	120.891248142912	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCCTGCCCCTTCATCCC	NA	False	NA	NA	False	NA	NA	NA	172848449	172857470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
50294	chr11	+	2952	17	NNC	ENSMUSG00000020280.13	novel	3559	18	NA	NA	53	-332	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	42.5392741328528	1	123	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTAGTGCAACTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23616240	23682544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623330_23649929_23649965_23652889_23653002_23656884_23656947_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
50295	chr17	-	2504	15	NIC	ENSMUSG00000063011.8	novel	2054	17	NA	NA	-84	-8	intron_retention	FALSE	canonical	3	35	junction_14	10.7085699039487	8	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCCCTTGAGATGTCCTG	6507	False	NA	NA	False	NA	NA	NA	25973436	25967597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972399_25972747_25972792_25973105_25973197_25973316
50296	chr3	+	1306	9	NNC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	19	43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	912.365024263863	3	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATTTTAACATAATAAAAAT	4962	False	NA	NA	False	NA	NA	NA	138148891	138161047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153705_138156688_138156876_138157022_138157266_138159502_138159639_138160428_138160568_138160845
50297	chr2	+	2757	6	FSM	ENSMUSG00000017418.15	ENSMUST00000128682.9	1035	6	55	-1777	-5	-794	multi-exon	FALSE	canonical	3	15	junction_2	39.1989795785554	2	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCTGTCCTCAGAAAAA	4760	False	NA	NA	False	NA	NA	NA	15060152	15083183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_15060386_15072949_15073011_15074668_15074779_15077934_15078019_15079772_15079925_15081066
50298	chr5	-	513	4	Antisense	novelGene_ENSMUSG00000029614.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	294	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGCTCAGCAGCTTCCG	NA	False	NA	NA	False	NA	NA	NA	121347026	121344779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121344872_121345207_121345256_121346447_121346637_121346842
50299	chr8	+	1681	4	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	93	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTTCCTCCTTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	43748111	43759907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43749536_43753598_43753745_43757514_43757600_43759881
50300	chr1	-	1871	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	-15	45	-15	-45	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	1	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGAATGGAGGCTCCAAT	NA	False	NA	NA	False	NA	NA	NA	135186191	135181361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
50302	chr5	-	1010	2	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	24372	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	135939032	135937262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938201_135938960
50303	chr5	+	1454	10	NNC	ENSMUSG00000029621.15	novel	1632	10	NA	NA	4	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	120.53840123728	2	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGTGTGCAAAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	145020697	145045556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034066_145037903_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
50304	chr15	+	933	6	FSM	ENSMUSG00000022551.9	ENSMUST00000229710.2	1791	6	861	-3	-82	3	multi-exon	FALSE	canonical	3	4240	junction_4	274.648866737149	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTAGCTGGTCAATG	NA	False	NA	NA	False	NA	NA	NA	76228593	76230135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
50305	chr2	+	2608	17	Antisense	novelGene_ENSMUSG00000034906.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	136	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTAACCGCCGCGTGACG	NA	False	NA	NA	False	NA	NA	NA	126945745	126975835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_126946239_126948001_126948115_126949272_126949376_126950392_126950582_126955481_126955591_126958451_126958575_126959424_126959533_126959996_126960148_126963045_126963248_126963959_126964052_126965459_126965643_126966749_126966876_126967473_126967607_126968041_126968128_126969022_126969114_126969403_126969646_126975771
50308	chr10	-	2266	12	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	9307	-3	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_11	18.5374314195997	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCATTGAGCTTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	42344969	42188586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42344855
50311	chr3	+	1066	4	ISM	ENSMUSG00000034544.18	ENSMUST00000161726.2	3213	10	304379	1440	299374	397	3prime_fragment	FALSE	canonical	3	336	junction_3	21.6487105081727	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATCGATTTGTATCACGC	NA	False	NA	NA	False	NA	NA	NA	67197678	67264289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_67197749_67257241_67257349_67262806_67262960_67263553
50312	chr17	+	1276	6	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	0	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	742.741300857842	1	62	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACAAATTGTTGTTTAAC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260264_29260366
50313	chr9	+	710	6	Antisense	novelGene_ENSMUSG00000119432.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1714	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGGCTCCGTCGTAAAA	NA	False	NA	NA	False	NA	NA	NA	88403111	88404920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_88403502_88403702_88403769_88403969_88404029_88404359_88404435_88404536_88404638_88404901
50314	chr11	+	2369	14	NNC	ENSMUSG00000020888.17	novel	2968	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	149.291859026531	10	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7135	False	NA	NA	False	NA	NA	NA	69891420	69900937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899243_69900305
50315	chrX	+	1518	2	NNC	ENSMUSG00000073207.2	novel	1536	2	NA	NA	1857	-5	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	0	110	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCATAAAATATGCCTGT	NA	False	NA	NA	False	NA	NA	NA	51881933	51888340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_51882047_51886935
50316	chr19	-	2403	5	Antisense	novelGene_ENSMUSG00000118106.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.433012701892219	110	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTGGCTGCGCGCGCCG	NA	False	NA	NA	False	NA	NA	NA	32492754	32463368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_32463955_32468732_32468933_32471267_32471368_32475782_32475915_32491369
50317	chr8	+	1096	4	ISM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	7	2418	0	-429	5prime_fragment	FALSE	canonical	3	52	junction_2	13.589211407093	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGTTGGGGCTGGCATT	NA	False	NA	NA	False	NA	NA	NA	71941371	71943626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978
50318	chr19	-	1014	1	Antisense	novelGene_ENSMUSG00000011752.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGCTCCATGATGGCCT	9937	False	NA	NA	False	NA	NA	NA	41907090	41906076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41906100_41907100
50319	chr1	-	3733	8	FSM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	75	4754	-22	-66	multi-exon	FALSE	canonical	3	14	junction_5	6.03391773769796	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAGTAAAAATTATGTA	NA	False	NA	NA	False	NA	NA	NA	64995908	64833033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708_64961642_64976855_64977699_64995853
50321	chr11	-	2225	12	FSM	ENSMUSG00000078619.11	ENSMUST00000106843.8	2548	12	321	2	5	-2	multi-exon	FALSE	canonical	3	510	junction_5	34.9963398322295	199	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCCCAGACCTGGTCATT	3270	False	NA	NA	False	NA	NA	NA	106158304	106154006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106154946_106155020_106155123_106155258_106155382_106155497_106155634_106155765_106155864_106156008_106156171_106156485_106156588_106156713_106156810_106157362_106157519_106157716_106157840_106157963_106158007_106158159
50322	chr8	+	1421	3	NNC	ENSMUSG00000071078.7	novel	1507	3	NA	NA	224	2	intron_retention	FALSE	non_canonical	0	0	junction_2	303	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCCATTTGTGGTACTC	685	False	NA	NA	False	NA	NA	NA	70584220	70586401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70584250_70584567_70585301_70585742
50323	chr12	-	3376	2	Fusion	ENSMUSG00000079036.11_ENSMUSG00000021039.10	novel	2232	14	NA	NA	4239	-409	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATCGAAACCCTGGAG	NA	False	NA	-11	True	NA	NA	NA	87496688	87490689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_87492086_87494708
50324	chr8	+	3218	5	NIC	ENSMUSG00000034796.15	novel	3542	12	NA	NA	-63	1	intron_retention	FALSE	canonical	3	16	junction_2	3.20156211871642	38	51	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTGTGCCTTTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	123853192	123861922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123854532_123855316_123855451_123856281_123857046_123860347_123860585_123861178
50325	chr3	-	3211	7	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	-22	125	intron_retention	FALSE	canonical	0	0	junction_5	29.8756682863422	1	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTACATAACAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	30754014	30733081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_30735263_30739007_30739176_30741563_30741758_30743287_30743456_30743998_30744164_30745305_30745474_30753847
50327	chr17	+	2553	13	Antisense	novelGene_ENSMUSG00000052397.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	151	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCGCTCCGCAGTCCCG	NA	False	NA	NA	False	NA	NA	NA	7006014	7050154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_7006865_7007026_7007277_7008360_7008461_7008822_7008981_7009752_7009887_7010090_7010252_7014661_7014759_7020379_7020525_7021376_7021461_7021998_7022275_7023244_7023345_7026879_7026961_7050037
50328	chr8	-	900	3	NIC	ENSMUSG00000045128.10	novel	473	4	NA	NA	0	-1	intron_retention	FALSE	canonical	3	16397	junction_2	1536.5	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCTTGTTTGCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	71350056	71348023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_71348690_71348776_71348957_71350002
50329	chr7	-	1344	3	FSM	ENSMUSG00000034875.6	ENSMUST00000142930.2	733	3	-288	-323	-288	-13	multi-exon	FALSE	canonical	3	20	junction_2	165.5	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGACATCCAAGTTGTAT	NA	False	NA	NA	False	NA	NA	NA	35254907	35246622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35247549_35250878_35250968_35254578
50330	chr8	-	1713	4	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	109	junction_1	1739.84271319757	1	103	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43759958	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749570_43753664_43753743_43757512_43757597_43759877
50331	chr7	+	1514	6	FSM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	11	0	-4	0	multi-exon	TRUE	canonical	3	288	junction_1	23.1395764870492	716	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	140795783	140798571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
50332	chr12	-	1338	4	FSM	ENSMUSG00000021276.11	ENSMUST00000221102.2	536	4	-6	-796	-1	11	multi-exon	FALSE	canonical	2	10	junction_1	203.882318997995	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGTTGAGTTAACTGAG	3369	False	NA	NA	False	NA	NA	NA	110855559	110839584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110840564_110846118_110846249_110850323_110850493_110855499
50333	chr1	+	2448	16	Antisense	novelGene_ENSMUSG00000026709.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	122	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACGCCCGGCGAGCGCC	NA	False	NA	NA	False	NA	NA	NA	160869283	160898213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_160869489_160871173_160871263_160872537_160872646_160872841_160873047_160874346_160874504_160877512_160877565_160878902_160879009_160881510_160881688_160884026_160884103_160885018_160885141_160888294_160888430_160890351_160890448_160890816_160890919_160892794_160892861_160896648_160896750_160897562
50334	chr17	+	1448	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	16	2	-4	-2	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	1334	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCACTTGTCTGTCCATG	4605	False	NA	NA	False	NA	NA	NA	36172225	36176292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
50336	chr19	-	4186	17	FSM	ENSMUSG00000040929.18	ENSMUST00000174850.8	2743	17	-49	-1394	-23	1394	multi-exon	TRUE	canonical	0	0	junction_16	2.87160125191504	21	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAGAAGGTGAGATCCTA	NA	False	NA	NA	False	NA	NA	NA	27988589	27744144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_27746094_27748028_27748072_27764013_27764168_27771010_27771220_27777516_27777667_27779781_27779880_27783587_27783743_27784192_27784309_27790977_27791091_27792884_27793007_27803432_27803553_27808010_27808193_27814806_27814882_27827110_27827370_27844912_27845011_27878178_27878304_27988371
50338	chr7	+	1660	9	NNC	ENSMUSG00000039018.16	novel	890	9	NA	NA	40	829	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	164.40037826903	2	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGTTTGGTGCATATTC	NA	False	NA	NA	False	NA	NA	NA	139717637	139728215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139717687_139718231_139718297_139720105_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165
50339	chr11	-	1323	10	NNC	ENSMUSG00000017176.18	novel	1399	9	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	221.449991567921	7	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGGTGGATGCACGCGTC	NA	False	NA	NA	False	NA	NA	NA	100331890	100320187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100320776_100321902_100321936_100322001_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331778_100331869
50340	chr11	+	2660	3	FSM	ENSMUSG00000020894.17	ENSMUST00000149559.2	918	3	589	-2331	-474	-3	multi-exon	FALSE	canonical	3	128	junction_2	7.5	88	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATATGGTGTCCAAAATCT	NA	False	NA	NA	False	NA	NA	NA	68979957	68983207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68980053_68980556_68980716_68980801
50341	chr10	-	5252	1	Antisense	novelGene_ENSMUSG00000061315.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGCATTTCTGAAGGGAA	7613	False	NA	NA	False	NA	NA	NA	127877619	127872367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127872400_127877600
50342	chr1	-	3356	8	NIC	ENSMUSG00000026135.18	novel	7473	9	NA	NA	23	-4453	combination_of_known_junctions	FALSE	canonical	1	5	junction_5	18.4457284475074	8	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTCTCCCACTCTACAT	NA	False	NA	NA	False	NA	NA	NA	74627269	74610480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74618483_74618778_74624542_74624857_74626722_74626911_74627139
50344	chr6	-	3349	23	NIC	ENSMUSG00000029822.16	novel	3307	22	NA	NA	20	-16	combination_of_known_junctions	FALSE	canonical	2	5	junction_22	3.69861488480697	27	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAAAGATTGAATGTT	NA	False	NA	NA	False	NA	NA	NA	50433121	50273800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50432804
50345	chr1	+	2141	11	NNC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	4803	-185	intron_retention	TRUE	canonical	0	0	junction_5	27.7337339714651	5	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAAGTAAAACTCTTGAA	NA	False	NA	NA	False	NA	NA	NA	9623146	9646941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9628614_9628712_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
50346	chr12	-	1517	1	Intergenic	novelGene_4346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGTGAAATAAAATCTGT	NA	False	NA	NA	False	NA	NA	NA	40258671	40257154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_40257200_40258700
50347	chr9	+	1641	11	NIC	ENSMUSG00000031939.17	novel	1210	11	NA	NA	542	0	intron_retention	FALSE	canonical	3	104	junction_1	149.895830495715	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTTATAGTTTGTATG	9729	False	NA	NA	False	NA	NA	NA	15218166	15228272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15218287_15219023_15219118_15219820_15220212_15221154_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
50348	chr6	+	1011	1	Antisense	novelGene_ENSMUSG00000079501.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACAATCTCCACTTTGCC	9616	False	NA	NA	False	NA	NA	NA	83851262	83852273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_83851300_83852300
50349	chr4	-	1294	9	ISM	ENSMUSG00000028637.17	ENSMUST00000154606.9	2724	10	90	1687	-3	-734	5prime_fragment	FALSE	canonical	2	7	junction_3	6.04022971417478	1	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAATACTCAAAAAGATAC	2214	False	NA	NA	False	NA	NA	NA	119217002	119181776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_119181806_119188319_119188435_119188678_119188816_119190776_119190919_119196957_119197071_119206926_119207072_119210266_119210422_119213834_119214045_119216754
50350	chr9	+	801	5	NNC	ENSMUSG00000032383.8	novel	892	5	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1029.46548630831	20	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATAGCTTGGGTGTGGGCT	1581	False	NA	NA	False	NA	NA	NA	65967519	65973901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972912_65973614
50352	chr4	+	3014	1	NIC	ENSMUSG00000089945.14	novel	7576	11	NA	NA	119754	-93994	mono-exon	FALSE	NA	NA	NA	NA	NA	1007	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAGCCCCAAGCTAAAAC	NA	False	NA	NA	False	NA	NA	NA	57757576	57760590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_57757600_57760600
50353	chr2	-	992	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1437.38539210335	3	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9578	False	NA	NA	False	NA	NA	NA	10085247	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069023_10073420_10073553_10074503_10074539_10085158
50355	chr14	+	1616	10	NNC	ENSMUSG00000022009.2	novel	3974	10	NA	NA	5	-2294	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	155.715631921433	903	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATAGTGTGTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	76348335	76372525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76348708_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225
50356	chr4	-	2975	16	FSM	ENSMUSG00000034853.17	ENSMUST00000102762.10	5689	16	32	2682	-24	-2	multi-exon	FALSE	canonical	3	17	junction_9	3.45382235919697	72	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCCAGTGTGTGGCTTAT	NA	False	NA	NA	False	NA	NA	NA	106657011	106604433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106615502_106615623_106617277_106617432_106619160_106619297_106619641_106619741_106620590_106620652_106627900_106627971_106628539_106628754_106656880
50357	chr15	+	1507	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	-279	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	584.134134852604	1	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513535	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100515861_100517284_100517542_100517631
50358	chr8	-	1432	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	-4	3474	0	845	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	32	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCAGTTGCTACT	NA	False	NA	NA	False	NA	NA	NA	127672594	127660890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
50363	chr8	+	1961	1	NIC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	12446	-925	mono-exon	FALSE	NA	NA	NA	NA	NA	6	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAGTTCTCCAGTCCACA	NA	False	NA	NA	False	NA	NA	NA	117665293	117667254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_117665300_117667300
50364	chrX	-	1310	5	NNC	ENSMUSG00000031422.17	novel	1996	4	NA	NA	-125	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1540.21465630606	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTCTAAATTTCAAAGC	NA	False	NA	NA	False	NA	NA	NA	135642226	135633721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634183_135634653_135635251_135636294_135636372_135640553_135640644_135642141
50365	chr10	-	1820	9	NIC	ENSMUSG00000000901.18	novel	1793	9	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	70.4911341943084	224	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGCCTGTCTGTTTTTCTT	5086	False	NA	NA	False	NA	NA	NA	75768306	75759056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75759325_75759761_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
50367	chr7	+	1571	12	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	523.061237190484	47	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	24	False	NA	NA	False	NA	NA	NA	5065232	5082932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078708_5082688
50368	chr2	+	2933	5	NNC	ENSMUSG00000027424.12	novel	2359	5	NA	NA	110	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	238.947693020879	1	133	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTATTTATAGGGTGATT	NA	False	NA	NA	False	NA	NA	NA	144112970	144123152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121078_144121463
50369	chr9	-	1705	14	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-8	-3	intron_retention	FALSE	canonical	3	198	junction_13	81.0618143855619	825	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATGTTCTTAATACTGTG	NA	False	NA	NA	False	NA	NA	NA	106315409	106310192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
50370	chr6	-	1571	3	NNC	ENSMUSG00000004268.12	novel	1074	3	NA	NA	-9	-5	intron_retention	FALSE	canonical	0	0	junction_2	652	1	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTTTTCTTTTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	124689041	124681349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124682620_124682703_124682802_124688838
50372	chr3	-	1124	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	847	0	-6	0	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAGTTTCATACTCTG	NA	False	NA	NA	False	NA	NA	NA	105866568	105850013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
50373	chrX	+	1938	5	FSM	ENSMUSG00000040621.15	ENSMUST00000087169.11	1928	5	-15	5	-12	-5	multi-exon	FALSE	canonical	1	1	junction_1	20.8371663140649	27	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGCTATGGACTGGATTT	NA	False	NA	NA	False	NA	NA	NA	164953475	164973501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_164953547_164961529_164961639_164961787_164961827_164963348_164963806_164972239
50374	chr2	-	953	1	Antisense	novelGene_ENSMUSG00000069020.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTCAGGAAAAAGGGGCA	NA	False	NA	NA	False	NA	NA	NA	29734066	29733113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29733100_29734100
50375	chr19	+	2568	6	FSM	ENSMUSG00000025034.10	ENSMUST00000026008.9	3580	6	616	396	616	-396	multi-exon	FALSE	canonical	0	0	junction_1	429.31275312993	232	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGCACAGCCCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	46490756	46504891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46491453_46501161_46501258_46501546_46501781_46502891_46502924_46503060_46503177_46503497
50377	chr15	-	1263	8	NIC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	382.492150112861	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845065	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81835814_81836124_81836270_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
50378	chr4	+	4641	5	NIC	ENSMUSG00000044730.18	novel	2911	5	NA	NA	-2	-6	intron_retention	FALSE	canonical	3	26	junction_1	10.4163333279998	31	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCTATATGACATTTGGT	NA	False	NA	NA	False	NA	NA	NA	124830848	124838442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124830884_124830971_124831127_124832232_124832511_124834158_124836265_124836375
50379	chr7	-	3399	7	NIC	ENSMUSG00000054662.9	novel	3088	23	NA	NA	0	-2938	intron_retention	FALSE	canonical	3	135	junction_1	22.946798372661	5	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAACATGGGGTGGGGGC	NA	False	NA	NA	False	NA	NA	NA	140697686	140686898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140687771_140687958_140688056_140688163_140688605_140688697_140690426_140690543_140690670_140691067_140691143_140697626
50380	chr11	+	2182	3	FSM	ENSMUSG00000107677.3	ENSMUST00000215071.2	2719	3	-1216	1753	-1216	-696	multi-exon	FALSE	canonical	3	11	junction_1	1.5	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCTCAGACACCAAGGC	1931	False	NA	NA	False	NA	NA	NA	58642343	58648744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58644171_58647616_58647657_58648429
50382	chr11	+	900	6	NNC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	2	-184	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2056.82761552834	43	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	441	False	NA	NA	False	NA	NA	NA	52122865	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135935_52137123
50383	chrX	-	1657	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	58	1932	0	-1932	multi-exon	FALSE	canonical	3	1008	junction_2	64.9970120101527	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATCCCCTCATATCCAA	NA	False	NA	NA	False	NA	NA	NA	93256257	93234244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
50386	chr2	+	990	1	FSM	ENSMUSG00000083097.4	ENSMUST00000118786.2	435	1	-78	-477	-78	477	mono-exon	FALSE	NA	NA	NA	NA	NA	56	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAAACTCCATGA	NA	False	NA	NA	False	NA	NA	NA	153668012	153669002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_153668000_153669000
50387	chr7	-	1563	13	NIC	ENSMUSG00000041560.13	novel	1455	13	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	550.108846552712	298	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGGGGTCTTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	15679726	15671759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679442
50388	chr3	-	1821	13	NNC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	-2	-519	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	65.1745519526005	7	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCATATATCCTGAGTAC	NA	False	NA	NA	False	NA	NA	NA	36054792	36028047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_36028440_36029965_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
50389	chr14	-	1345	5	NNC	ENSMUSG00000023243.10	novel	3392	5	NA	NA	27	-663	intron_retention	FALSE	non_canonical	0	0	junction_1	49.7795138586146	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGAGCCCCCCCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	20231850	20190787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20190884_20192392_20192526_20194702_20195191_20196568_20196681_20231334
50390	chr16	+	1338	3	FSM	ENSMUSG00000022516.11	ENSMUST00000050881.10	1329	3	-10	1	0	-1	multi-exon	FALSE	canonical	3	15	junction_2	274	743	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCATGTTGCTTCTGAGT	95	False	NA	NA	False	NA	NA	NA	4756975	4758879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4757158_4757241_4757578_4758059
50393	chr19	+	2347	9	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-2	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	148.14751938524	1	96	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTACTTGATGTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	60800031	60824670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803029_60803247_60805968_60806043_60809640_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
50394	chr4	+	1775	8	ISM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	14	13822	-7	933	5prime_fragment	FALSE	canonical	3	371	junction_6	22.9373592416301	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCAGTTTTGGGGTTGGG	NA	False	NA	NA	False	NA	NA	NA	107171573	107203197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205
50396	chr2	-	3097	21	NNC	ENSMUSG00000027194.17	novel	3408	20	NA	NA	40	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.1139929971591	1	124	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAATATAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	94236984	94158277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94158355_94158621_94158831_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189311_94192711_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
50397	chr13	-	1985	1	Intergenic	novelGene_1513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAAGTGGCTTTGATTG	NA	False	NA	NA	False	NA	NA	NA	97957034	97955049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_97955000_97957000
50398	chr17	-	1802	9	Antisense	novelGene_ENSMUSG00000024101.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGAAGGAACCAAGACGT	NA	False	NA	NA	False	NA	NA	NA	66426380	66420855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_66421010_66422663_66422776_66422946_66423098_66423255_66423390_66423621_66423753_66423963_66424168_66424256_66424437_66425055_66425215_66425803
50399	chr4	+	2692	12	NNC	ENSMUSG00000028252.21	novel	3365	12	NA	NA	42	-449	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	174.614427660224	1	139	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCTAAGTTTTACTGTGA	49	False	NA	NA	False	NA	NA	NA	21727808	21750097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21727916_21730396_21730504_21732217_21732270_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742649_21743298_21743315_21746349_21746430_21746655_21746775_21748136
50400	chr9	+	1782	3	Antisense	novelGene_ENSMUSG00000091537.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	58	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAACAGGACTTACAGCCT	NA	False	NA	NA	False	NA	NA	NA	108909486	108911449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108911157_108911237_108911297_108911396
50401	chr16	+	1078	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	-14	9	-14	0	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	5662	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	35892040	35912481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
50402	chr15	-	3053	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	98	148	15	-146	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	1	181	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATCATAATGTCATCTTG	NA	False	NA	NA	False	NA	NA	NA	83033487	83010324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
50403	chr8	-	1885	11	NIC	ENSMUSG00000022322.9	novel	2156	13	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	93.0664278889009	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	False	NA	NA	False	NA	NA	NA	4829585	4785975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4817906_4818023_4818143_4818312_4829420
50404	chr13	-	2812	19	NNC	ENSMUSG00000052374.17	novel	3013	21	NA	NA	0	-3	intron_retention	TRUE	canonical	0	0	junction_5	25.3944195289019	224	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACCTGGAAACTTTGACA	NA	False	NA	NA	False	NA	NA	NA	12355613	12284323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_12284539_12285663_12285823_12287584_12287651_12289963_12290111_12291248_12291429_12292280_12292420_12293679_12293863_12295314_12295456_12297400_12297510_12303392_12303544_12305559_12305708_12306545_12306777_12309195_12309289_12315820_12315903_12321159_12321248_12323785_12323873_12324480_12324601_12325732_12325848_12355255
50405	chr14	+	3825	4	ISM	ENSMUSG00000021775.12	ENSMUST00000090543.6	4663	8	23651	3	-3104	-3	3prime_fragment	FALSE	canonical	3	94	junction_1	8.28653526310404	66	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTTATTGTTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	4254219	4265639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_4254823_4257731_4257918_4261566_4261778_4262814
50406	chr19	+	1393	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-299	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4183.2292269767	1	81	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTTTTCCTGTCCTGCCT	997	False	NA	NA	False	NA	NA	NA	8944558	8955544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946731_8946871_8947207_8947352_8949879_8950001_8950272_8950473_8954681_8954855_8954948_8955074_8955307
50408	chr15	+	2384	16	NNC	ENSMUSG00000022191.17	novel	4570	35	NA	NA	-25	-2043	intron_retention	FALSE	non_canonical	0	0	junction_1	246.470065795693	1	130	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACTTCGCCACCT	1292	False	NA	NA	False	NA	NA	NA	12826187	12883273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12826283_12833961_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861771_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881810_12883251
50411	chr6	-	1343	5	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	21	514	intron_retention	FALSE	non_canonical	0	0	junction_1	285.72276773124	1165	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTAGCATAAAGTCTGCAT	NA	False	NA	NA	False	NA	NA	NA	81942918	81938440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_81938567_81938746_81939479_81940914_81941050_81941219_81941339_81942687
50412	chr12	-	1514	11	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1835	-1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_9	85.4522673777589	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAAGGGTTTGTTTCATT	9507	False	NA	NA	False	NA	NA	NA	110805526	110774232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794610_110800559_110800675_110805381
50413	chrX	+	2357	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	75	-6	-4	0	multi-exon	FALSE	canonical	3	597	junction_2	148.5	1	118	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	NA	NA	NA	133502002	133507809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133502083_133503440_133503512_133505603
50414	chr10	+	1112	6	NNC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1042.22673157044	67	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAAACTGTGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	128158402	128163053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128158645_128159198_128159312_128159452_128159716_128161906_128162137_128162445_128162543_128162886
50415	chr9	+	2272	18	FSM	ENSMUSG00000032591.16	ENSMUST00000035211.14	2262	18	-9	-1	-9	1	multi-exon	FALSE	canonical	3	16	junction_13	9.09998288906715	77	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGTGCTTCTTAGTTTCT	6654	False	NA	NA	False	NA	NA	NA	107957625	107962203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
50416	chr7	-	2465	1	FSM	ENSMUSG00000044786.7	ENSMUST00000209061.2	2465	1	8	-8	8	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAAATTTGTCTTTTTCG	6679	False	NA	NA	False	NA	NA	NA	28078672	28076207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28076200_28078700
50417	chr3	+	2351	3	ISM	ENSMUSG00000078684.9	ENSMUST00000135913.2	6190	19	46891	-277	46891	277	3prime_fragment	FALSE	canonical	3	272	junction_2	41	6	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTGCTGGGATTGAAG	NA	False	NA	NA	False	NA	NA	NA	88729413	88733171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88731105_88731656_88731842_88732696
50418	chr17	+	2157	2	Intergenic	novelGene_122	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	7	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCAGGTGAGGAAAACTC	NA	False	NA	NA	False	NA	NA	NA	31943940	31948669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_31946064_31948635
50419	chr5	+	2271	13	NIC	ENSMUSG00000029635.16	novel	2467	13	NA	NA	1	-218	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	32.5016025245936	5	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGAAGCTGCCTAGTGT	NA	False	NA	NA	False	NA	NA	NA	146168040	146239411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229433_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
50420	chr17	+	2549	3	NNC	ENSMUSG00000024044.20	novel	786	4	NA	NA	-1850	3343	intron_retention	FALSE	non_canonical	0	0	junction_1	0	42	51	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCTGCCACGAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	69579920	69583186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_69582297_69582787_69582896_69583121
50421	chr11	+	1800	8	ISM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	716	-2	34	0	3prime_fragment	FALSE	canonical	3	72	junction_1	52.1641835056998	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	5049641	5056093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
50422	chr12	-	815	6	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3078.61497430257	12	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCCTGCCCTATTTCTGA	NA	False	NA	NA	False	NA	NA	NA	111638731	111635807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111635974_111637393_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
50423	chr7	+	1815	9	NIC	ENSMUSG00000099481.7	novel	3131	10	NA	NA	2	30	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	42.6378279817347	1	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGAGTGAATGAGTCTTG	NA	False	NA	NA	False	NA	NA	NA	101714719	101731828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101715012_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101729735_101729812_101730689_101730818_101731247
50424	chr5	+	1849	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-49	1	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	289	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	112436578	112463222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
50425	chr12	+	2967	16	FSM	ENSMUSG00000044712.16	ENSMUST00000140523.8	3032	16	61	4	-17	-4	multi-exon	FALSE	canonical	2	3	junction_10	3.76769897358528	37	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTATGCTGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73333613	73400819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_73333807_73335166_73335298_73338933_73339008_73356918_73356972_73365750_73365791_73376753_73376833_73383795_73383879_73384283_73384343_73388181_73388248_73388480_73388535_73390442_73390523_73391566_73391668_73397287_73397413_73398524_73398670_73398852_73398948_73399230
50426	chr18	+	1148	5	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	18	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1793.50557568132	50	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	75133565	75136345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_75133615_75134261_75134315_75134420_75135194_75135731_75135924_75136264
50427	chr5	+	1172	10	NNC	ENSMUSG00000029486.14	novel	3556	10	NA	NA	2	-2293	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	285.560700342759	2004	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGCTCCTCATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	96358004	96412275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96387560_96387626_96409920_96410003_96412059
50429	chr11	+	1369	6	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	821.738011777476	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTAATATCAAACTGTAT	NA	False	NA	NA	False	NA	NA	NA	20151438	20175450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151657_20165678_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
50430	chr7	-	209	2	NNC	ENSMUSG00000050708.17	novel	825	3	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGCTTTTTGAGACAG	NA	False	NA	NA	False	NA	NA	NA	45109246	45107389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107510_45109157
50431	chr7	-	1805	3	NIC	ENSMUSG00000062797.15	novel	806	4	NA	NA	-6	4	combination_of_known_splicesites	FALSE	canonical	3	37	junction_2	553.5	9	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCTTGACAGTGGCTAT	NA	False	NA	NA	False	NA	NA	NA	89590379	89566732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_89568216_89569280_89569400_89590176
50432	chr2	+	3157	1	Antisense	novelGene_ENSMUSG00000039501.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAGTTTGCGCAAACAGA	NA	False	NA	NA	False	NA	NA	NA	166877725	166880882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_166877700_166880900
50433	chr2	+	697	1	Antisense	novelGene_ENSMUSG00000039501.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCCGAAGGGGCCTAA	NA	False	NA	NA	False	NA	NA	NA	166897085	166897782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_166897100_166897800
50436	chr14	+	1532	9	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	531.112511620655	9	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGTTTAATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8348781	8357576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349025_8349570_8349777_8350609_8350771_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
50437	chr11	+	1702	7	ISM	ENSMUSG00000020456.18	ENSMUST00000081894.5	4114	23	56797	22	56797	-8	3prime_fragment	FALSE	canonical	3	625	junction_2	62.6163361716058	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGAAATGAAAAAAGAAC	6514	False	NA	NA	False	NA	NA	NA	6299401	6306570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
50438	chr5	-	2811	9	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-126	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	96.0532892461263	1	123	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTAATCTAGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	5607368	5587462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5597989_5605233_5605383_5606064_5606157_5607212
50439	chr9	-	1732	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113697.8	1742	9	35	-25	22	0	multi-exon	FALSE	canonical	3	24	junction_7	230.863460729497	203	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	NA	False	NA	NA	NA	66956522	66929871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
50440	chr5	+	1737	5	NNC	ENSMUSG00000029581.15	novel	2675	5	NA	NA	354	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1163.76466156178	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGGCCCGTGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	142946951	142958934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142947036_142955659_142955817_142955921_142956019_142956325_142956441_142957650
50442	chr4	+	1324	11	NNC	ENSMUSG00000028252.21	novel	1406	12	NA	NA	26	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	138.298806936286	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAACTTTTAGTTTTCT	33	False	NA	NA	False	NA	NA	NA	21727792	21747955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735473_21741939_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
50443	chr8	+	768	4	ISM	ENSMUSG00000008450.9	ENSMUST00000212042.2	645	5	14603	-349	14603	-2	3prime_fragment	FALSE	canonical	3	3516	junction_1	107.42749492875	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAACAGTTTAAATTGT	NA	False	NA	NA	False	NA	NA	NA	106602217	106605960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106602291_106602985_106603058_106603141_106603241_106605436
50444	chr15	+	2417	7	NIC	ENSMUSG00000022553.17	novel	1686	8	NA	NA	-2	-9	intron_retention	FALSE	canonical	3	633	junction_2	18.2094297915485	11	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGACTTAGATGGAACCT	NA	False	NA	NA	False	NA	NA	NA	76235524	76238563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
50445	chr2	-	1291	1	Antisense	novelGene_ENSMUSG00000027285.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGCTCGCGCCACCACA	NA	False	NA	NA	False	NA	NA	NA	120452041	120450750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_120450800_120452000
50446	chr6	-	1837	4	ISM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	274	0	271	0	3prime_fragment	FALSE	canonical	3	30	junction_1	3.55902608401044	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	NA	False	NA	NA	NA	83010178	83007914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83009042_83009211_83009397_83009515_83009610_83009747
50447	chr3	+	1228	9	NNC	ENSMUSG00000078578.10	novel	738	8	NA	NA	68	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1196.76145675527	1	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGAGTTAGCTGCCTG	NA	False	NA	NA	False	NA	NA	NA	135144144	135171816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168809_135170986_135171300_135171483
50448	chr2	-	1799	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	6	0	-2	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	NA	False	NA	NA	NA	30068456	30063482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
50449	chr16	+	3108	19	FSM	ENSMUSG00000022842.19	ENSMUST00000003898.12	3152	19	48	-4	25	4	multi-exon	TRUE	canonical	3	19	junction_18	7.37781124490401	49	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGTCTCTTCCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	20448625	20464669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
50450	chr15	-	1684	8	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	394	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	577.7606665005	1	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAAAACTTTGCAAATCC	NA	False	NA	NA	False	NA	NA	NA	83056399	83037718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038729_83044329_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
50451	chr12	+	1490	10	ISM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	2184	36	2123	-36	3prime_fragment	FALSE	canonical	3	2088	junction_7	130.11229717649	2	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAATGAGTACCATGATAA	6157	False	NA	-30	True	NA	NA	NA	100078596	100089628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
50453	chr16	+	1257	3	FSM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	350	11	-1	-8	multi-exon	FALSE	canonical	3	527	junction_2	18	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGATGCTCATGTTGCT	94	False	NA	NA	False	NA	NA	NA	4756974	4758872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4757158_4757241_4757503_4758059
50455	chr9	+	1500	4	FSM	ENSMUSG00000025647.17	ENSMUST00000154184.5	1038	4	48	-510	-37	-7	multi-exon	FALSE	canonical	3	51	junction_1	98.8005847935909	196	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCGCTTCCCCTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108883978	108886785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108884076_108885045_108885162_108885354_108885574_108885717
50456	chr4	+	1024	6	NNC	ENSMUSG00000054405.15	novel	746	8	NA	NA	-2579	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1237.10749735017	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTTGATGGTCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	132271390	132281047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278890_132280369
50458	chr19	-	2782	9	NIC	ENSMUSG00000024797.15	novel	2675	10	NA	NA	74	-3	intron_retention	FALSE	canonical	3	124	junction_6	17.2753437013566	64	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTCTTGCCTGCAGG	1094	False	NA	NA	False	NA	NA	NA	6127154	6118022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
50459	chr2	-	2625	6	NIC	ENSMUSG00000057234.10	novel	1894	6	NA	NA	-718	1	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	18.3891272223561	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	109111811	108922643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109110980
50460	chr4	+	2854	18	FSM	ENSMUSG00000061887.15	ENSMUST00000030367.15	3195	18	335	6	-56	-6	multi-exon	TRUE	canonical	3	121	junction_13	39.9235428457496	132	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCAGCCCTTCCTGACAT	NA	False	NA	NA	False	NA	NA	NA	106769001	106906885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
50461	chr15	+	1074	7	ISM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	4111	893	1487	-893	3prime_fragment	FALSE	canonical	3	1189	junction_4	43.9674753526842	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTTCAGTCTGCTTTAT	4743	False	NA	NA	False	NA	NA	NA	78919184	78921660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
50462	chr11	+	1769	6	NIC	ENSMUSG00000078970.6	novel	2002	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	106.956813714695	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTGGAGGCGTTGA	2472	False	NA	NA	False	NA	NA	NA	17161918	17183796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_17162147_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
50463	chr16	+	1704	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	26	0	26	0	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	1555	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCTGTGATTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	4544252	4584606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
50464	chr17	+	2897	4	FSM	ENSMUSG00000062743.10	ENSMUST00000162659.2	2917	4	15	5	15	-2	multi-exon	FALSE	canonical	1	3	junction_1	0.471404520791032	11	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGACCCGTGGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	21604024	21619522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21604283_21612722_21612814_21613437_21613565_21617101
50466	chr4	-	3506	11	FSM	ENSMUSG00000044700.16	ENSMUST00000105687.9	3697	11	181	10	-93	-2	multi-exon	FALSE	canonical	3	194	junction_3	67.7469556511582	112	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTTGTATCAGGCTGTG	NA	False	NA	NA	False	NA	NA	NA	149822320	149799841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_149801535_149802476_149802615_149803107_149803402_149803968_149804041_149806663_149806897_149811683_149811888_149812358_149812709_149813992_149814170_149815519_149815715_149816292_149816414_149822291
50468	chr9	-	1834	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	142	18	142	-18	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	494	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCAAACTGATTTAAAACT	NA	False	NA	NA	False	NA	NA	NA	96246353	96214725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
50469	chr6	+	1993	2	Genic_Genomic	ENSMUSG00000108125.2	novel	318	1	NA	NA	-500	1382	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGAGAACACGAGA	NA	False	NA	NA	False	NA	NA	NA	120885133	120887333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_120886665_120886871
50470	chr15	-	1325	9	NIC	ENSMUSG00000022474.16	novel	1291	9	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	533.918635538225	247	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845048	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81835814_81836124_81836270_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
50471	chr2	-	999	9	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-44	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1479.97807732919	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATCAGTCTCATTATTA	9648	False	NA	NA	False	NA	NA	NA	10085177	10060845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068206_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
50472	chr3	-	1056	5	FSM	ENSMUSG00000028066.16	ENSMUST00000056370.13	1007	5	-54	5	-54	-5	multi-exon	FALSE	canonical	0	0	junction_1	377.05205210952	2061	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACTGTCATCTGTGAGGA	NA	False	NA	NA	False	NA	NA	NA	88317692	88301454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88301878_88303211_88303408_88306441_88306543_88307017_88307124_88317462
50474	chr3	-	1701	13	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	295.476545412472	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTTATCAAATGTACCTG	NA	False	NA	NA	False	NA	NA	NA	157630700	157599900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600322_157600405_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
50475	chr1	+	4375	9	ISM	ENSMUSG00000042046.16	ENSMUST00000045110.14	6282	13	36559	252	-461	-252	3prime_fragment	FALSE	canonical	3	42	junction_6	5.06828373317832	36	31	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAATTTACTCGACAC	NA	False	NA	NA	False	NA	NA	NA	132381851	132394444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_132381883_132382969_132383147_132383597_132383728_132384062_132384220_132384606_132384740_132386054_132386169_132387613_132387729_132390650_132390786_132391061
50476	chr11	+	3238	4	NIC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	41528	-13	intron_retention	FALSE	canonical	3	243	junction_3	13.9124245031395	1	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTCTCACTGATGCCAGA	NA	False	NA	NA	False	NA	NA	NA	4629274	4635686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4629553_4630082_4630183_4631438_4631519_4632906
50477	chr11	+	3582	37	NNC	ENSMUSG00000039230.15	novel	3906	39	NA	NA	46	-64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.9109989107481	1	68	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCGGGACTGCCCATAC	NA	False	NA	NA	False	NA	NA	NA	121342820	121507925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_121342922_121350261_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121384584_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469608_121473552_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500251_121500806_121500917_121502489_121502575_121507753
50480	chr10	-	1318	11	NNC	ENSMUSG00000036112.16	novel	1876	11	NA	NA	-4	178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	884.529258984687	1	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGCGTCCAACCTGT	NA	False	NA	NA	False	NA	NA	NA	93725650	93697264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706060_93707345_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
50481	chrX	+	2123	13	FSM	ENSMUSG00000079418.6	ENSMUST00000112971.2	2202	13	0	79	0	-4	multi-exon	FALSE	canonical	2	18	junction_1	12.4707992259251	129	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGTTTTGGTTGAGAAC	NA	False	NA	NA	False	NA	NA	NA	139857655	139947187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_139857721_139887027_139887139_139888914_139888987_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
50482	chr17	+	1492	7	NNC	ENSMUSG00000024084.9	novel	864	3	NA	NA	10990	10	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	82.476259210353	30	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTCATGTCCATAAATGA	NA	False	NA	NA	False	NA	NA	NA	79370606	79397660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79370670_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
50483	chr8	-	1595	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-6	-3	combination_of_known_junctions	FALSE	canonical	3	16	junction_11	54.5031654247927	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTGTATATGTGCCGAT	NA	False	NA	NA	False	NA	NA	NA	57003884	56984559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003722
50484	chrX	-	1177	5	Antisense	novelGene_ENSMUSG00000062070.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCGCGGCAGACGTGCGC	NA	False	NA	NA	False	NA	NA	NA	105241933	105230808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_105230920_105235610_105235662_105237959_105238381_105240446_105240556_105241448
50485	chr13	-	1235	3	Antisense	novelGene_ENSMUSG00000052293.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	477	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCCCCCCACCCCAACGGT	NA	False	NA	NA	False	NA	NA	NA	100792558	100788100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_100788230_100790702_100790789_100791538
50486	chr1	-	2560	7	NIC	ENSMUSG00000054770.17	novel	2512	7	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	22.3737197026631	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTGGTTTAACTGAGCA	NA	False	NA	NA	False	NA	NA	NA	58009211	57994260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004509_58004700_58006655_58006883_58009179
50487	chr17	+	2768	17	NIC	ENSMUSG00000041354.17	novel	943	8	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	27.6331294599435	71	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	4547	False	NA	NA	False	NA	NA	NA	34149868	34156661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34150045_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
50488	chr8	-	1612	10	NNC	ENSMUSG00000006517.6	novel	1756	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	74.2144041125291	4	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	123170153	123160339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164246_123164718_123164766_123166115_123166263_123166376_123166492_123166920_123166992_123170032
50489	chr5	-	2268	2	NNC	ENSMUSG00000046572.11	novel	6816	3	NA	NA	13910	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGATCTTTACTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	38828183	38825836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38827281_38827359
50490	chr18	+	1839	12	FSM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	-16	0	13	0	multi-exon	FALSE	canonical	3	53	junction_4	9.25845604107201	121	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTGCCTCAGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	36868104	36875450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
50491	chr1	+	1409	5	NNC	ENSMUSG00000053332.14	novel	1066	9	NA	NA	-27	-2	intron_retention	FALSE	canonical	0	0	junction_1	2236.77662887916	1	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGAACTGTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	160863562	160866100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863815_160864125_160865118_160865564_160865608_160865794_160865843_160866026
50493	chr9	+	3119	26	NNC	ENSMUSG00000032481.18	novel	3538	27	NA	NA	28	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	265.864765623427	1	104	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATTAAACCTGACTAGTT	2530	False	NA	NA	False	NA	NA	NA	109961132	110064325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035178_110051137_110051225_110063944
50495	chr4	+	2804	13	NNC	ENSMUSG00000028542.18	novel	3479	14	NA	NA	-75	297	intron_retention	FALSE	canonical	0	0	junction_6	29.2541545007808	1	113	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGCCCTGTTTATTTGTG	NA	False	NA	NA	False	NA	NA	NA	117692454	117725919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720763_117720885_117721021_117721109_117721214_117721601_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
50498	chr11	-	2050	9	NNC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-78	0	intron_retention	FALSE	non_canonical	0	0	junction_1	115.190060335083	1	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8949	False	NA	NA	False	NA	NA	NA	82798591	82791597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_82792701_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795781_82796109_82796202_82796332_82796410_82797250_82797331_82798378
50499	chr5	-	2841	6	NNC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	2	-12	intron_retention	FALSE	non_canonical	0	0	junction_2	100.527807098335	1	131	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAACCGAGAGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	31117622	31112398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31113082_31113273_31113487_31115229_31115406_31115576_31115702_31115814_31115896_31116059
50500	chr4	-	2191	9	NNC	ENSMUSG00000038816.15	novel	740	5	NA	NA	45	-1379	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116.155875873759	2	110	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGAGGAAAAGTCTCAGC	29	False	NA	NA	False	NA	NA	NA	56846047	56827644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_56828734_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837892_56838952_56839056_56841560_56841681_56844446_56844635_56845963
50502	chr5	+	2724	4	NNC	ENSMUSG00000018143.11	novel	2849	3	NA	NA	-3	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	11.1455023315337	43	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTGTCTGGATGGTG	NA	False	NA	NA	False	NA	NA	NA	139777285	139788407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_139777468_139784893_139784974_139785839_139787746_139787851
50503	chr4	-	1541	3	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	208	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	490	5	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224429	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219372_127219502_127220565_127224294
50504	chr17	-	1015	4	NNC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	476.277463483443	4223	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAACCCTTACTGTGTT	NA	False	NA	NA	False	NA	NA	NA	13135000	13130238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13130637_13132625_13132889_13134524_13134712_13134833
50506	chr9	+	2269	2	FSM	ENSMUSG00000006673.15	ENSMUST00000194387.2	647	2	-856	-766	-518	2	multi-exon	FALSE	canonical	3	744	junction_1	0	2	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGGAGAACGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	108432898	108437364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108434248_108436444
50507	chr5	-	1891	4	NNC	ENSMUSG00000028933.12	novel	3247	3	NA	NA	-24	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.5322083904833	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAATTTAAAACATTTCT	NA	False	NA	NA	False	NA	NA	NA	25910795	25894824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25895482_25896794_25897827_25903248_25903331_25910675
50508	chr9	-	1533	10	NNC	ENSMUSG00000066839.13	novel	1676	9	NA	NA	-1	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	82.1287757273243	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAAACCTCTTCCCTGGC	5920	False	NA	NA	False	NA	NA	NA	21996699	21983552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995380_21995476_21995505_21996652
50509	chr2	+	2103	7	Antisense	novelGene_ENSMUSG00000026851.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	46	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGAAATAAATGGAAATATT	NA	False	NA	NA	False	NA	NA	NA	30862854	30871078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_30863313_30863702_30863803_30863912_30864054_30865913_30866100_30867902_30867981_30868905_30868977_30870009
50510	chr7	-	1426	7	FSM	ENSMUSG00000053291.16	ENSMUST00000134462.8	1372	7	-61	7	0	-7	multi-exon	FALSE	canonical	3	670	junction_1	25.5451669705946	555	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACACCTGTGTTTCGGCCTC	NA	False	NA	NA	False	NA	NA	NA	26878301	26867858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
50511	chr8	-	3295	12	NNC	ENSMUSG00000036534.7	novel	3315	12	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	99.3857165852167	242	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAACTGTGTCTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	96580145	96562553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575004_96575397_96579429_96579536_96580113
50512	chr4	-	1963	9	FSM	ENSMUSG00000028975.17	ENSMUST00000103217.11	2006	9	43	0	-5	0	multi-exon	FALSE	canonical	3	391	junction_6	18.1757909043871	211	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGCTCTGACCTCGTC	NA	False	NA	NA	False	NA	NA	NA	149184290	149044991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
50513	chr16	-	2535	13	Antisense	novelGene_ENSMUSG00000035506.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGGACTCGAGCATCTGG	NA	False	NA	NA	False	NA	NA	NA	33483771	33337757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_33337863_33338646_33338743_33355229_33355383_33361220_33361411_33371249_33371482_33426532_33426624_33428514_33428601_33437475_33437624_33444922_33445544_33466930_33467031_33470186_33470304_33478564_33478682_33483292
50514	chr15	-	1539	13	NNC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	-16	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.434385862593	553	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGTACTGCAGTGTTTG	9400	False	NA	NA	False	NA	NA	NA	98729351	98710685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98710999_98711052_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
50515	chr16	-	2076	10	ISM	ENSMUSG00000012114.18	ENSMUST00000232236.2	3404	18	59478	13	-7616	-13	3prime_fragment	FALSE	canonical	3	7	junction_1	86.4574397544184	2	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTCCTGTGTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	17481333	17469097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_17470128_17470568_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17481240
50517	chr3	+	2110	1	Genic_Genomic	ENSMUSG00000027939.12	novel	NA	NA	NA	NA	107394	1589	mono-exon	FALSE	NA	NA	NA	NA	NA	87	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCCGGAAAGGAGCGAAAGC	NA	False	NA	NA	False	NA	NA	NA	90118834	90120944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_90118800_90120900
50518	chr8	+	1736	5	NNC	ENSMUSG00000031565.19	novel	3386	9	NA	NA	2101	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	114.313986458351	1	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTATATATTTACATGTCT	7631	False	NA	NA	False	NA	NA	NA	26061839	26064557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_26062477_26062734_26062806_26063138_26063264_26063561_26063668_26063760
50522	chr8	+	1877	12	NNC	ENSMUSG00000003033.16	novel	2084	12	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.843400100595	4	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTTCTCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	72993967	73011229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72994088_73001964_73002021_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
50523	chr13	+	1833	13	NNC	ENSMUSG00000021694.19	novel	2111	12	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	24.6368062504502	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	108295273	108331519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589_108331010_108331285
50525	chr2	+	1123	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	17	2	1	-2	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	2340	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATCTGTAATCATCCCTG	NA	False	NA	NA	False	NA	NA	NA	145745177	145758343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
50526	chr9	-	1511	13	NIC	ENSMUSG00000032126.17	novel	1605	14	NA	NA	42	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	256.834198570898	7	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTGAGTCTGAGACCTT	1450	False	NA	NA	False	NA	NA	NA	44255483	44247648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
50527	chr6	-	1621	5	NNC	ENSMUSG00000030057.16	novel	2175	5	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4630.48644177909	3	87	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGATGACAGTTTGGAC	NA	False	NA	NA	False	NA	NA	NA	87828026	87820065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87821139_87822103_87822284_87822450_87822540_87822637_87822776_87827885
50529	chr17	-	1657	12	NNC	ENSMUSG00000002658.10	novel	1717	13	NA	NA	-110	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	176.536279136158	5	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGCGAGTCATCACTG	NA	False	NA	NA	False	NA	NA	NA	57318398	57310401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57310632_57310720_57310812_57310914_57310974_57311327_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
50530	chr5	+	603	4	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7611.70162023943	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTGGTGTCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	121343466	121347027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343682_121345238_121345259_121346453_121346639_121346844
50534	chr8	+	2478	9	NNC	ENSMUSG00000053886.5	novel	1600	8	NA	NA	320	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	11.5974135047432	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	68729538	68800351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_68729600_68734684_68735064_68746954_68747112_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
50535	chr15	-	1279	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	1	117	junction_5	9864.57571312624	1	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACACTGGTTTTCCCAC	3572	False	NA	NA	False	NA	NA	NA	79967553	79961999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964042_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
50536	chr4	-	1004	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	492	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	798.476950199566	1	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	2	True	NA	NA	False	NA	NA	NA	41098180	41093289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093525_41093793_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
50537	chrX	-	1522	8	NIC	ENSMUSG00000057836.13	novel	1645	9	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_4	534.592616209878	1	56	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	72140696	72129900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72136875_72136911_72137788_72137859_72138566_72138689_72140586
50538	chr1	-	1598	7	NNC	ENSMUSG00000059498.14	novel	1347	5	NA	NA	-639	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	70.2608236027257	29	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGGATCTCCTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	170893143	170878745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_170879422_170881507_170881763_170885259_170885518_170886154_170886176_170886837_170886964_170887195_170887296_170892981
50540	chr17	-	1422	2	ISM	ENSMUSG00000023942.16	ENSMUST00000163492.8	2216	12	5641	2	1807	0	3prime_fragment	FALSE	canonical	3	2235	junction_1	0	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	45897860	45896127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45896709_45897019
50541	chr14	-	2378	9	NIC	ENSMUSG00000022130.11	novel	1682	12	NA	NA	4489	0	intron_retention	FALSE	canonical	3	141	junction_7	15.3210435349554	6	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTAATGTCTTTTTATTT	4742	False	NA	NA	False	NA	NA	NA	118365667	118349887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_118350570_118351724_118351823_118352528_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634
50542	chr3	+	2767	14	NIC	ENSMUSG00000028060.15	novel	2567	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_9	124.465912255563	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTCATTTCTCTTTTT	-9	True	NA	NA	False	NA	NA	NA	88593121	88620161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607671_88607822_88616086_88616249_88617164_88617250_88618067_88618160_88618936
50543	chrX	+	1264	5	NIC	ENSMUSG00000001964.15	novel	1595	6	NA	NA	1	-140	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	119.038859201523	171	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTGATTCTTCCTACT	NA	False	NA	NA	False	NA	NA	NA	73298436	73301353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300612
50544	chr6	+	720	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	112	1057	-21	-386	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	24	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGGATCTTGGGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	51447621	51459627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
50546	chr11	+	2190	12	NNC	ENSMUSG00000020840.11	novel	2497	12	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	215.824193835233	1	113	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	NA	False	NA	NA	NA	76836604	76878205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_76836720_76837067_76837271_76840822_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
50548	chr11	-	782	7	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACATCACTAACGAAGTGG	NA	False	NA	NA	False	NA	NA	NA	48696908	48692588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48692662_48693099_48693246_48694228_48694325_48694682_48694794_48694980_48695123_48696370_48696481_48696804
50549	chr17	+	2907	6	NIC	ENSMUSG00000025737.6	novel	3139	8	NA	NA	49	-379	intron_retention	FALSE	canonical	3	100	junction_2	14.532721699668	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTGCAGTTGGGGAGGT	NA	False	NA	NA	False	NA	NA	NA	26042671	26047316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26043661_26044627_26045599_26046008_26046128_26046208_26046507_26046626_26046968_26047127
50550	chr11	+	2929	3	NIC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	-6	-16	intron_retention	FALSE	canonical	3	333	junction_1	14.5	7	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTTTAGAGAACTGTCCC	NA	False	NA	NA	False	NA	NA	NA	32176523	32182006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_32176718_32177751_32180054_32181573
50553	chrX	-	2300	7	FSM	ENSMUSG00000031352.11	ENSMUST00000112115.2	2473	7	153	20	139	-20	multi-exon	FALSE	canonical	3	158	junction_6	157.36096155725	151	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGTTAAAAGGTTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	168103137	168094545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168102971
50554	chr19	+	2719	2	NIC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	-237	-1321	intron_retention	FALSE	canonical	3	816	junction_1	0	16	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACTGACCTAAAAGAATTA	1555	False	NA	NA	False	NA	NA	NA	5416531	5420233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5418971_5419953
50555	chr4	-	2449	15	ISM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	4634	-170	4634	170	3prime_fragment	FALSE	canonical	3	76	junction_4	16.39686381163	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	140496913	140473005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621
50557	chr3	+	2390	1	NIC	ENSMUSG00000027710.15	novel	3930	18	NA	NA	-1515	-1027	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTTATTTCCAGAATCT	NA	False	NA	NA	False	NA	NA	NA	36141867	36144257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_36141900_36144300
50558	chr2	+	2238	4	Intergenic	novelGene_2604	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	103	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGGAACTAGAAACCGACG	5786	False	NA	NA	False	NA	NA	NA	32168827	32177981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_32170809_32171698_32171823_32177608_32177657_32177896
50559	chr16	+	1210	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	-77	650	multi-exon	FALSE	canonical	0	0	junction_1	0	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24348066	24349762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_24348327_24348812
50562	chr10	-	2259	2	NNC	ENSMUSG00000039166.17	novel	2321	2	NA	NA	8920	-1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	0	65	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTCTTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	25067136	25044988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_25047147_25067035
50563	chr9	+	1464	7	NIC	ENSMUSG00000032123.6	novel	2205	9	NA	NA	-433	-288	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	104.504651677436	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTAGCATCCCCTCCCTCT	4479	False	NA	NA	False	NA	NA	NA	44238846	44244903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44244112_44244269_44244353
50564	chr5	-	1742	9	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	33	-259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	294.99396180261	1	60	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34093561	34055518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34057756_34057869_34058539_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079356_34093369
50565	chr15	+	2116	2	FSM	ENSMUSG00000023047.12	ENSMUST00000161376.2	364	2	4	-1756	4	-3	multi-exon	FALSE	canonical	3	133	junction_1	0	14	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCACACTCTTCATCAATGT	NA	False	NA	NA	False	NA	NA	NA	102360761	102363062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102360995_102361179
50568	chr19	-	1895	14	NIC	ENSMUSG00000024830.18	novel	1979	15	NA	NA	-6	47	intron_retention	FALSE	canonical	3	79	junction_5	10.8698595277881	206	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAGGGGATCCTAAAGG	2797	False	NA	NA	False	NA	NA	NA	4213305	4206743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
50569	chr7	-	1020	1	FSM	ENSMUSG00000086477.4	ENSMUST00000238534.2	563	1	-443	-14	11	14	mono-exon	FALSE	NA	NA	NA	NA	NA	19	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAGGAGATCTGACGAC	9415	False	NA	NA	False	NA	NA	NA	98352084	98351064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98351100_98352100
50570	chr8	+	1892	4	FSM	ENSMUSG00000031723.9	ENSMUST00000034159.8	1890	4	-11	9	-11	-9	multi-exon	FALSE	canonical	3	27	junction_1	19.3045763140937	108	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGTCAGCAGGGTTGT	NA	False	NA	NA	False	NA	NA	NA	110292512	110300674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_110292696_110295521_110295730_110298002_110298155_110299325
50572	chr1	+	3384	8	NNC	ENSMUSG00000025969.16	novel	6708	16	NA	NA	67549	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	7.94624799152765	39	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTCCTACATTGTCT	281	False	NA	NA	False	NA	NA	NA	62810409	62857848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_62810558_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62851692_62851744_62854491_62856108_62856801
50573	chr4	-	2316	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	58	-2	intron_retention	FALSE	canonical	3	16	junction_6	14.4666495988976	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTCAGTGTCTGTTCC	8761	False	NA	NA	False	NA	NA	NA	152112036	152104234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106692_152107152_152107265_152110234_152110477_152110844_152111517_152111999
50574	chr17	+	1653	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	101	-98	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	264.053971755776	1	42	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATTCAAAGGCATATCC	NA	False	NA	NA	False	NA	NA	NA	6320845	6355941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6320866_6330872_6330981_6337207_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
50575	chr3	+	4224	3	NNC	ENSMUSG00000074212.8	novel	9477	8	NA	NA	6619	-18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	24	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGGGGTGTTCTCACCAT	NA	False	NA	NA	False	NA	NA	NA	137617609	137622300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137619817_137620018_137620218_137620482
50576	chr11	+	1675	7	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	0	461	intron_retention	FALSE	canonical	1	3	junction_6	55.921572065011	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTAGAGCAGAGCAACGT	3564	False	NA	NA	False	NA	NA	NA	100973443	100976907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976615
50577	chr2	-	1028	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1419.22545386168	31	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	NA	False	NA	NA	NA	10085243	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068977_10069123_10073420_10073553_10074503_10074539_10085158
50580	chr8	+	1164	7	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-155	-2098	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	1174.22712169892	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111768202	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111781809
50581	chr14	+	2014	8	Fusion	ENSMUSG00000114619.2_ENSMUSG00000094151.2	novel	1761	5	NA	NA	-39	-336	multi-exon	FALSE	non_canonical	0	0	junction_1	10.0813021510728	25	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	43026219	43045109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_43026486_43034760_43034871_43035898_43036158_43037369_43037480_43038207_43038371_43039360_43039493_43040175_43040358_43044317
50582	chr12	-	1277	9	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	-48	20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	345.465424282952	516	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTCTTTTTCTTTTT	64	False	NA	NA	False	NA	NA	NA	78908317	78889755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895236_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
50583	chr16	+	1166	3	NNC	ENSMUSG00000022516.11	novel	1162	4	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	263.5	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCATGTTGCTTCTGAGT	95	False	NA	NA	False	NA	NA	NA	4756975	4758879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_4757097_4757277_4757503_4758059
50584	chr7	-	726	6	ISM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	71	4301	2	-1245	5prime_fragment	FALSE	canonical	3	1661	junction_4	88.9345826998699	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCGAAAGAATCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	139696318	139689923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
50585	chr11	-	2375	9	Antisense	novelGene_ENSMUSG00000118885.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGGGGTCCTCCGAGA	NA	False	NA	NA	False	NA	NA	NA	98864988	98828619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_98828711_98841073_98841622_98857172_98857320_98858868_98859013_98860982_98861143_98861317_98861493_98862403_98862611_98863335_98863494_98864243
50586	chr11	-	821	1	NIC	ENSMUSG00000085156.9	novel	771	3	NA	NA	1322	-25	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAATAAATAGAAATGAG	NA	False	NA	NA	False	NA	NA	NA	6476437	6475616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6475600_6476400
50590	chrX	+	886	6	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	17903	475	206	-475	3prime_fragment	FALSE	canonical	3	3123	junction_1	321.766126246999	175	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20547039	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
50591	chr5	+	1096	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-24	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9348.50914436212	5	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697571	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699051_115699140_115699309_115699403_115699578_115700484_115700626_115701341
50592	chr1	-	2260	20	Antisense	novelGene_ENSMUSG00000026187.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	95	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTACTTTTTCCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	72434068	72346687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_72346720_72349587_72349706_72351564_72351749_72353307_72353370_72354644_72354741_72358157_72358348_72364230_72364351_72365435_72365519_72369095_72369196_72373792_72373858_72378116_72378257_72379152_72379234_72382169_72382295_72385384_72385584_72393401_72393501_72420750_72420890_72422522_72422617_72422870_72422927_72433052_72433126_72433864
50593	chr5	-	916	7	Antisense	novelGene_ENSMUSG00000077426.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGAGTCACGTACGCATG	9613	False	NA	NA	False	NA	NA	NA	108055916	108048437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_108048512_108049734_108049804_108049885_108049997_108051493_108051732_108052579_108052760_108055053_108055142_108055760
50594	chr12	+	1519	10	NNC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-10	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	277.892509639213	24	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTGAAGTTCATACAGAT	NA	False	NA	NA	False	NA	NA	NA	59060229	59075177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59060400_59060755_59060841_59063590_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
50595	chr15	+	1654	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_5	370.099121857915	221	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTTACTGTACTGTCCTG	4	True	NA	NA	False	NA	NA	NA	10486103	10493768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492990_10493239_10493477_10493557
50596	chr19	+	1475	9	NIC	ENSMUSG00000024911.8	novel	1209	10	NA	NA	-2	0	intron_retention	FALSE	canonical	3	126	junction_5	11.4455231422596	953	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTGGTCCTTGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	5510654	5515078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5514244_5514361_5514460_5514952
50598	chr17	+	1576	4	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	4622	13	4620	-13	3prime_fragment	FALSE	canonical	3	283	junction_1	65.5303152916436	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTCCATATTGACCAGCC	NA	False	NA	NA	False	NA	NA	NA	48042388	48045394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_48043430_48043885_48044037_48044681_48044781_48045109
50599	chr12	-	720	5	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	1528	-14	-26	5prime_fragment	FALSE	canonical	3	7551	junction_3	152.294123327199	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCGTGGCATATGGTAC	NA	False	NA	NA	False	NA	NA	NA	111638731	111637322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
50600	chr5	-	2114	1	Intergenic	novelGene_704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAAGTAAGTGGCCTTA	7311	False	NA	NA	False	NA	NA	NA	34493522	34491408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_34491400_34493500
50601	chr6	-	2195	12	FSM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	-70	-3	0	3	multi-exon	FALSE	canonical	3	36	junction_11	7.42677755109095	114	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGGTATTTTCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	72575396	72542913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
50602	chr7	+	1578	6	NIC	ENSMUSG00000035585.17	novel	1375	6	NA	NA	48	-2	combination_of_known_junctions	FALSE	canonical	2	10	junction_3	444.675881963481	1	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTATTTTGAGTCCTT	2060	False	NA	NA	False	NA	NA	NA	3696648	3704009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3696889_3697596_3697844_3697976_3698227_3698383_3698621_3698711_3698833_3703526
50606	chr17	-	1212	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	-73	-9	-73	9	intron_retention	FALSE	canonical	3	141	junction_3	32.273139846559	339	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATTGCTGTCAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	79202602	79192316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
50608	chr7	+	1560	15	FSM	ENSMUSG00000002963.18	ENSMUST00000098478.7	1550	15	-8	-2	-6	1	multi-exon	FALSE	canonical	2	3	junction_5	63.3371686987626	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAGCCATCTTGCTGGGG	9510	False	NA	NA	False	NA	NA	NA	44506757	44512075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
50609	chr12	-	1503	8	NNC	ENSMUSG00000020650.16	novel	6155	8	NA	NA	218	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	141.174085614108	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATTGGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	31684380	31645358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31645838_31646066_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261
50610	chr17	+	1624	15	NNC	ENSMUSG00000024069.15	novel	2148	14	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	66.1666495313468	371	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTGTGGCAGTGAGGT	NA	False	NA	NA	False	NA	NA	NA	74702645	74730662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74723801_74723875_74725614_74725663_74726526_74726596_74730011
50611	chr11	+	2065	7	NNC	ENSMUSG00000040746.16	novel	937	7	NA	NA	25	-2	intron_retention	FALSE	canonical	3	24	junction_4	190.735782927297	1	57	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATGAAAAAAAAAGGTTAAG	9163	False	NA	NA	False	NA	NA	NA	70538085	70542234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70538936_70540046_70540173_70540270_70540359_70540500_70540844_70540955_70541046_70541589_70541671_70541747
50612	chr6	-	865	1	NIC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	-644	14	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATTTATTAACTGCT	NA	False	NA	NA	False	NA	NA	NA	148091848	148090983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_148091000_148091800
50613	chr9	+	1635	9	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	77	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	341.514274957871	3	38	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTAGTGACTCTGAGTG	445	False	NA	NA	False	NA	NA	NA	45281559	45307446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306993_45307058
50615	chr9	+	1693	17	NNC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_15	109.308622715685	40	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTTTGGCAGAGTATTT	NA	False	NA	NA	False	NA	NA	NA	107828169	107849469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172_107848248_107848824_107848882_107849302
50616	chr1	+	2098	3	Antisense	novelGene_ENSMUSG00000070565.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	22	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTCAGACCCAAAGGTCAA	NA	False	NA	NA	False	NA	NA	NA	156962758	156966446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_156963949_156965437_156966249_156966349
50618	chr7	-	1391	6	NIC	ENSMUSG00000030423.8	novel	2113	7	NA	NA	-6	-819	intron_retention	FALSE	canonical	3	243	junction_2	19.7929280299808	1512	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	NA	False	NA	NA	NA	37970779	37962238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_37962734_37963751_37963854_37965323_37965629_37966792_37967020_37968325_37968379_37970570
50619	chr6	+	1545	5	NNC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	0	-4	intron_retention	FALSE	canonical	0	0	junction_2	62.2153518032326	2	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTGCTGTGTTTATT	7119	False	NA	NA	False	NA	NA	NA	125016810	125025961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125016861_125020916_125020993_125024177_125024904_125025138_125025201_125025330
50620	chr10	+	894	4	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	3231.47152582569	37	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	80662519	80665119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80662740_80664294_80664468_80664544_80664631_80664704
50621	chr3	-	1289	9	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	-6	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.907432689553	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCATAAAATCCTTAAGT	NA	False	NA	NA	False	NA	NA	NA	131065679	131027096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027247_131027646_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
50622	chr9	+	2710	4	ISM	ENSMUSG00000038884.15	ENSMUST00000177067.8	1043	6	534	-508	534	-28	3prime_fragment	FALSE	canonical	3	88	junction_2	18.006171781426	30	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTCTGGCTTCTCACTT	NA	False	NA	NA	False	NA	NA	NA	20781106	20785575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_20782532_20782671_20782822_20784163_20784561_20784837
50623	chr12	+	5516	19	ISM	ENSMUSG00000041992.10	ENSMUST00000109691.4	6746	28	130564	0	-10991	0	3prime_fragment	FALSE	canonical	3	19	junction_8	5.76387215526353	21	32	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTCCTGCCTAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	117610662	117723472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_117610738_117621897_117622024_117652298_117652418_117652882_117652972_117673003_117673083_117677839_117677985_117679041_117679140_117681936_117681968_117682853_117682933_117684976_117685127_117689685_117689784_117692391_117692515_117694274_117694454_117703361_117703453_117706585_117706637_117707907_117707996_117712120_117712186_117717156_117717212_117719697
50627	chr16	+	1469	11	NIC	ENSMUSG00000014232.15	novel	1779	12	NA	NA	-41	-52	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	45.2770361220785	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATCTACAAGAAAATCC	3267	False	NA	NA	False	NA	NA	NA	3726861	3758959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_3727018_3729314_3729427_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
50628	chr8	-	961	7	ISM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	883	880	775	-134	3prime_fragment	FALSE	canonical	3	1093	junction_6	105.647868990445	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAGATGAAGATGAGGAC	NA	False	NA	NA	False	NA	NA	NA	85572680	85569358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490
50629	chr4	-	1730	4	NNC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	259.570585561787	1629	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTTCGTTTCCTTATGTG	3739	False	NA	NA	False	NA	NA	NA	41741367	41738497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41739668_41740549_41740643_41740775_41740977_41741101
50630	chr13	-	566	1	Intergenic	novelGene_1389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATTATATTAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	59967551	59966985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_59967000_59967600
50631	chr6	+	2371	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	114	52	-13	-52	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	1	125	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACGTACTTAAATTTTGAT	6	True	NA	NA	False	NA	NA	NA	17637095	17666919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
50632	chr1	-	1787	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	245	77	19	-77	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	378	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGCCTTAAGTAGCCT	7045	False	NA	NA	False	NA	NA	NA	36586281	36577251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
50633	chr8	+	3782	5	FSM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	4	-5	4	5	multi-exon	FALSE	canonical	3	16	junction_4	47.8663503935698	11	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGGCTTTTGGGAATTA	NA	False	NA	NA	False	NA	NA	NA	115166445	115180563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115177256
50634	chr16	-	2538	3	FSM	ENSMUSG00000022548.15	ENSMUST00000155682.2	422	3	-1722	-394	-1722	3	multi-exon	FALSE	canonical	3	168	junction_1	2	20	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTCCTGTGGATTC	NA	False	NA	NA	False	NA	NA	NA	31124218	31115936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31116395_31119212_31119302_31122227
50635	chr7	-	1745	7	NIC	ENSMUSG00000057176.5	novel	2536	9	NA	NA	-56	13	intron_retention	FALSE	canonical	3	22	junction_2	2.23606797749979	63	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCATCCCCCACCTTCAC	8656	False	NA	NA	False	NA	NA	NA	127187397	127182545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184697_127185446_127186061_127186735_127186768_127187048
50637	chr9	-	2525	1	Genic_Genomic	ENSMUSG00000040433.17	novel	NA	NA	NA	NA	34274	3	mono-exon	FALSE	NA	NA	NA	NA	NA	32	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTGTCTTTTCTAAGTG	NA	False	NA	NA	False	NA	NA	NA	96567344	96564819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_96564800_96567300
50638	chrX	+	2998	11	NIC	ENSMUSG00000036959.16	novel	7360	14	NA	NA	16	473	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	8.72295821381715	26	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCCTCATCTGGAAATAT	NA	False	NA	NA	False	NA	NA	NA	47450429	47496059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_47450540_47463899_47464066_47465873_47465955_47467820_47468208_47472798_47473023_47477952_47478175_47480747_47480915_47482030_47482177_47489437_47489516_47490635_47490787_47494793
50639	chr11	-	1233	1	NIC	ENSMUSG00000020538.16	novel	4063	18	NA	NA	677	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAACTCTTAAGGAAAATA	8820	False	NA	NA	False	NA	NA	NA	60091189	60089956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60090000_60091200
50640	chr5	+	3091	3	FSM	ENSMUSG00000053334.7	ENSMUST00000065698.7	3133	3	47	-5	47	5	multi-exon	FALSE	canonical	3	46	junction_2	4.5	39	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCGTTGTCTCATCCAG	762	False	NA	NA	False	NA	NA	NA	113873910	113878666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_113874111_113874881_113875234_113876127
50641	chr10	+	2604	7	NNC	ENSMUSG00000019891.16	novel	3024	11	NA	NA	62505	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	69.2675970421957	1	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTACTAATTGTAATAAAC	NA	False	NA	NA	False	NA	NA	NA	52172237	52197438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_52172542_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
50642	chr5	+	1273	5	FSM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	10	8	10	-8	multi-exon	FALSE	canonical	3	200	junction_4	19.5751756058534	1130	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGCATTTGGTTAATGC	NA	False	NA	NA	False	NA	NA	NA	38417538	38426970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426402
50643	chr7	-	1556	9	FSM	ENSMUSG00000036733.17	ENSMUST00000108141.2	1526	9	-32	2	-32	0	multi-exon	TRUE	canonical	3	345	junction_5	209.790818435889	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3752	False	NA	NA	False	NA	NA	NA	30349601	30340425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347155_30347241_30349008_30349145_30349362
50644	chr19	+	2123	3	ISM	ENSMUSG00000024712.10	ENSMUST00000025617.4	2482	4	1153	11	628	-11	3prime_fragment	FALSE	canonical	3	326	junction_2	36	148	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGTCAACCTGAATCC	2477	False	NA	NA	False	NA	NA	NA	17372559	17378702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_17372714_17375941_17376045_17376836
50645	chr11	+	1971	10	ISM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	98	5	17	0	3prime_fragment	FALSE	canonical	3	180	junction_1	22.7063922038174	133	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTGGTTCAATACTTAC	6030	False	NA	NA	False	NA	NA	NA	115705647	115713915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
50646	chr7	-	975	2	Intergenic	novelGene_3012	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGGGGCTTCTGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	103892111	103890443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_103891376_103892068
50647	chr13	-	1401	8	FSM	ENSMUSG00000003062.14	ENSMUST00000199278.3	1074	8	-2	-325	-2	0	multi-exon	FALSE	canonical	3	699	junction_7	61.3454587245254	1395	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	19579927	19541845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
50648	chr17	+	1637	5	FSM	ENSMUSG00000046711.17	ENSMUST00000119486.9	1030	5	39	-646	0	1	multi-exon	FALSE	canonical	3	1035	junction_1	1821.9597964829	8	96	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGTGTAAGGAGCAT	NA	False	NA	NA	False	NA	NA	NA	27775626	27782645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781411
50649	chr9	+	3430	6	NIC	ENSMUSG00000032333.7	novel	1984	7	NA	NA	44	-16	intron_retention	FALSE	canonical	3	282	junction_1	36.1861852092757	52	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTACGGTGTGGAATGGA	NA	False	NA	NA	False	NA	NA	NA	58160518	58169787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
50650	chrX	-	2331	22	FSM	ENSMUSG00000009941.11	ENSMUST00000113189.8	2375	22	45	-1	45	-1	multi-exon	TRUE	canonical	3	15	junction_3	7.21770310384392	93	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATGTCTTGAAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	133865458	133845275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_133845538_133845640_133845702_133850435_133850616_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
50651	chr7	+	2175	11	NIC	ENSMUSG00000030822.16	novel	2175	13	NA	NA	-18	-7	intron_retention	FALSE	canonical	3	60	junction_1	51.7799188875379	280	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAATATATGTTTCTGAC	NA	False	NA	NA	False	NA	NA	NA	127070172	127075920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127075171_127075393_127075466_127075555
50652	chr6	-	4011	23	NIC	ENSMUSG00000045095.17	novel	4598	23	NA	NA	3	-451	combination_of_known_junctions	FALSE	canonical	0	0	junction_22	11.5070944699562	2	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGCGCAGAAGAGGGGGC	2804	False	NA	NA	False	NA	NA	NA	93890532	93655467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671193_93674174_93674469_93676596_93676790_93678270_93678363_93681257_93681342_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93890304
50653	chr9	+	3234	14	NNC	ENSMUSG00000025648.19	novel	3488	14	NA	NA	-30	-5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_7	4.21605834032145	37	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAACAGTAATATGAGGTG	1752	False	NA	NA	False	NA	NA	NA	108827925	108861291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108828044_108828180_108828278_108834639_108834707_108836351_108836427_108836759_108836817_108837416_108837539_108838654_108838740_108839516_108839725_108840225_108840373_108854114_108854220_108856587_108856718_108856812_108856876_108857961_108858027_108859396
50654	chr16	-	1334	11	NNC	ENSMUSG00000022751.10	novel	1286	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_7	288.004183997386	2824	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGATGTTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	56987695	56977027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56982519_56982568_56983880_56983970_56984560_56984682_56986460_56986580_56987643
50655	chr16	-	3692	1	Genic_Genomic	ENSMUSG00000022983.17	novel	NA	NA	NA	NA	729	3688	mono-exon	FALSE	NA	NA	NA	NA	NA	34	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAATAAAAAAAAGTACACA	NA	False	NA	NA	False	NA	NA	NA	90039229	90035537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_90035500_90039200
50656	chr8	+	1843	12	NIC	ENSMUSG00000003808.19	novel	1708	13	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	23	junction_2	188.163108424316	2	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTCTGTTGTCATTCATT	NA	False	NA	NA	False	NA	NA	NA	85583612	85595883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594548_85594637_85594716_85594852_85594968_85595494
50657	chrX	+	1223	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5605.09585605416	2	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAAAACCAGTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	36059303	36062449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060983_36061394_36061530_36062039
50658	chr15	+	1008	1	Intergenic	novelGene_3369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAGAAGCAGGAGAATCAG	NA	False	NA	NA	False	NA	NA	NA	99765753	99766761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_99765800_99766800
50660	chrX	-	2290	13	ISM	ENSMUSG00000036916.14	ENSMUST00000076635.13	4355	19	25090	1004	-23339	129	3prime_fragment	FALSE	canonical	3	57	junction_3	14.9461998142969	1	81	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCACCGATGCCTGCAAG	NA	False	NA	NA	False	NA	NA	NA	47655920	47631505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825
50661	chr9	-	1380	12	FSM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	27	-15	27	15	multi-exon	FALSE	canonical	3	1517	junction_8	89.5680174619608	3762	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCCTAGCTTCTTAATAA	NA	False	NA	NA	False	NA	NA	NA	55419500	55361776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
50662	chr19	-	2247	4	Antisense	novelGene_ENSMUSG00000047368.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	145	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCCGCGGCCCGGCCCGG	NA	False	NA	NA	False	NA	NA	NA	21662995	21630894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_21630955_21655713_21656185_21658229_21658412_21661461
50667	chr17	+	721	3	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTGCTGCACGCAGTAC	NA	False	NA	NA	False	NA	NA	NA	45878718	45879938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879045_45879248_45879491_45879785
50668	chr14	+	376	1	NIC	ENSMUSG00000023411.13	novel	325	3	NA	NA	-88	-1150	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTCGGAGAGGAAAAGGAG	NA	False	NA	NA	False	NA	NA	NA	56062163	56062539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_56062200_56062500
50669	chr14	+	3026	10	FSM	ENSMUSG00000023411.13	ENSMUST00000024179.6	3267	10	238	3	-4	-1	multi-exon	FALSE	canonical	3	26	junction_9	7.13537527022325	36	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTCAGGCTCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	56062489	56071397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_56062594_56063614_56064711_56066059_56066223_56066821_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679_56070262_56071013
50671	chr4	+	1867	1	NIC	ENSMUSG00000045751.17	novel	4478	24	NA	NA	22227	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAAAACAGCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	24601074	24602941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_24601100_24602900
50672	chr7	-	3346	2	FSM	ENSMUSG00000059981.13	ENSMUST00000130371.2	669	2	-1862	-815	-1862	-14	multi-exon	FALSE	canonical	3	63	junction_1	0	57	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTATTCTAACAGACCACA	6811	False	NA	NA	False	NA	NA	NA	126468290	126464863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126466088_126466168
50674	chr1	+	2101	10	ISM	ENSMUSG00000026480.13	ENSMUST00000027754.7	2596	15	-101	4443	-48	-4443	5prime_fragment	FALSE	canonical	2	9	junction_5	2.14878662286819	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACATTTTAAATGGAAAC	458	False	NA	NA	False	NA	NA	NA	152683539	152708298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_152683957_152686668_152686752_152692741_152692851_152697266_152697402_152699967_152700076_152701632_152701693_152703168_152703213_152706102_152706245_152706443_152706513_152707364
50675	chr11	-	2469	18	NIC	ENSMUSG00000020375.10	novel	2688	18	NA	NA	-58	-11	combination_of_known_junctions	FALSE	canonical	3	21	junction_17	12.7347167373532	83	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGACAAAGTGCTGGCC	747	False	NA	NA	False	NA	NA	NA	50312876	50280123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50312742
50677	chr11	+	3082	6	ISM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	50	286	2	-286	intron_retention	FALSE	canonical	3	194	junction_1	27.7012635090893	12	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCACAGTAGAAGAACCATG	NA	False	NA	NA	False	NA	NA	NA	60721506	60748963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525
50678	chr13	+	2146	13	NIC	ENSMUSG00000039242.11	novel	2397	13	NA	NA	155	-15	combination_of_known_splicesites	FALSE	canonical	3	6	junction_12	73.1782450975394	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTTTAGAATAAACTAGC	NA	False	NA	NA	False	NA	NA	NA	14129413	14173644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165994_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171610_14172939
50679	chr8	+	1534	8	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	90.2784807228869	461	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	47070438	47092724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953_47091178_47092131
50680	chr17	-	1061	4	NIC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	-10	-7	combination_of_known_junctions	FALSE	canonical	2	35	junction_2	483.678267722116	3589	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTGTGAACCCTTACTG	NA	False	NA	NA	False	NA	NA	NA	13135000	13130242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_13130637_13132656_13132889_13134443_13134712_13134833
50682	chr7	-	1590	5	ISM	ENSMUSG00000100826.7	ENSMUST00000189581.7	6861	12	1637	32207	309	-1	5prime_fragment	FALSE	canonical	3	50	junction_4	15.4008928312614	183	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCATAGTTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	59623870	59619325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_59620292_59621627_59621693_59623018_59623399_59623594_59623648_59623744
50684	chr2	+	1707	3	NIC	ENSMUSG00000026960.7	novel	2548	4	NA	NA	29	-758	combination_of_known_splicesites	TRUE	canonical	2	5	junction_1	256	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTATTAATTAAGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	53082128	53108474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_53082535_53092930_53093064_53107306
50685	chrX	-	4425	11	NNC	ENSMUSG00000035395.12	novel	4182	12	NA	NA	-12	-28	intron_retention	FALSE	non_canonical	0	0	junction_1	1.35646599662505	19	59	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAAAGTAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	88453307	88447481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_88450288_88450374_88450515_88450602_88450687_88450915_88451066_88451172_88451245_88451489_88451673_88451746_88452151_88452396_88452547_88452638_88452806_88452945_88453058_88453150
50686	chr6	+	1771	12	FSM	ENSMUSG00000002871.15	ENSMUST00000204765.3	1738	12	-33	0	1	0	multi-exon	TRUE	canonical	3	57	junction_1	17.59319928714	260	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	NA	False	NA	NA	NA	88879281	88889213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
50687	chr4	-	1026	11	NNC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	15	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	436.279050608667	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6392	False	NA	NA	False	NA	NA	NA	129494426	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487434_129488923_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
50688	chr16	-	1996	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1328	0	571	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1	121	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTTTTACAAAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	22084676	22064626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
50689	chr13	+	1458	7	FSM	ENSMUSG00000015536.15	ENSMUST00000166104.9	1193	7	13	-278	5	-5	multi-exon	FALSE	canonical	3	133	junction_2	16.9844700306551	735	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTAAGCATCCAGTT	NA	False	NA	NA	False	NA	NA	NA	114954784	114965537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
50690	chr7	-	2625	8	FSM	ENSMUSG00000025103.9	ENSMUST00000026093.9	3001	8	376	0	0	0	multi-exon	FALSE	canonical	3	689	junction_4	90.4076933695809	178	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGTCACCTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	81478803	81441821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81478720
50691	chr16	-	1839	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	29	77	29	-77	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	1	103	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCAGTGTATTTGCTGA	983	False	NA	NA	False	NA	NA	NA	11021166	11010910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
50692	chr15	+	1925	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	206	4	206	-4	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACGCCAGCATTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	100513435	100518638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
50693	chr18	+	1621	2	ISM	ENSMUSG00000024603.9	ENSMUST00000223794.2	1724	9	0	14997	0	-6903	5prime_fragment	FALSE	canonical	3	197	junction_1	0	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTGTTTCAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	60659289	60669137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_60659438_60667664
50695	chr18	+	1411	3	FSM	ENSMUSG00000024603.9	ENSMUST00000225005.2	797	3	-129	-485	-129	485	multi-exon	FALSE	canonical	3	187	junction_1	0	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACCTGCTGGCTGTATG	NA	False	NA	NA	False	NA	NA	NA	60671372	60678335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60671515_60674643_60674688_60677110
50696	chr17	+	4954	32	NIC	ENSMUSG00000001870.17	novel	6671	34	NA	NA	59873	2	combination_of_known_junctions	FALSE	canonical	2	10	junction_19	5.15907210397233	26	48	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATTTGAGTGTGGAAG	NA	False	NA	NA	False	NA	NA	NA	75373161	75698325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_75373198_75458259_75458430_75486031_75486200_75532150_75532376_75533961_75534237_75555888_75555992_75559338_75559411_75573482_75573606_75580861_75581030_75583549_75583619_75585946_75585970_75589322_75589423_75589914_75590014_75597009_75597136_75598285_75598412_75599750_75599874_75603218_75603339_75617150_75617274_75619970_75620094_75621997_75622121_75627965_75628089_75634191_75634318_75655738_75655865_75659681_75659826_75666284_75666465_75667706_75667794_75669504_75669634_75670332_75670474_75671333_75671505_75692067_75692191_75696424_75696575_75697366
50697	chrX	-	1445	10	NNC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	589.847019296393	19	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	72140633	72129898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130376_72130524_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
50698	chr11	+	2205	6	FSM	ENSMUSG00000050270.13	ENSMUST00000061786.6	1597	6	5	-613	5	613	multi-exon	FALSE	canonical	3	15	junction_4	4.45421149026402	167	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAATTTTCTTTTTTTT	3923	False	NA	NA	False	NA	NA	NA	66915984	66926751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934
50699	chr13	-	3148	5	NIC	ENSMUSG00000006191.18	novel	694	6	NA	NA	0	1032	intron_retention	FALSE	canonical	3	9	junction_1	84.3593504005335	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAAAATTGTGTATAGAAA	NA	False	NA	NA	False	NA	NA	NA	30039626	30019945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_30022686_30030210_30030324_30033921_30034092_30038880_30038925_30039545
50700	chr10	+	1619	9	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	0	-1267	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	505.582275698031	2	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGGCCTTTAAGACTTAA	NA	False	NA	NA	False	NA	NA	NA	128173602	128197081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128186948_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
50701	chr9	-	1357	7	Antisense	novelGene_ENSMUSG00000032215.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATAACACTTTTCGATCC	9111	False	NA	NA	False	NA	NA	NA	73030600	73020808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_73020864_73022167_73022283_73023687_73023762_73025163_73025226_73028481_73028567_73029542_73029783_73029874
50702	chr5	+	1765	3	FSM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	11	-3	7	0	multi-exon	FALSE	canonical	3	62	junction_2	0.5	244	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTCTCCTTTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	136165018	136170469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136165149_136168191_136168390_136169032
50703	chr14	-	2320	4	NNC	ENSMUSG00000043702.10	novel	7725	3	NA	NA	271	-5070	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	140.307598590462	110	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTACCAATTCTTATAGCT	NA	False	NA	NA	False	NA	NA	NA	26390767	26386182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_26387123_26387532_26387612_26389402_26390603_26390666
50704	chr15	+	2891	8	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	-4	-2	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	5.85191404236115	143	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTTTTAAGCGTGATTT	NA	False	NA	NA	False	NA	NA	NA	61909882	62122820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_61910051_61978996_61979315_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62116567_62116707_62121006
50705	chr11	-	1884	8	FSM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	0	789	0	-3	multi-exon	FALSE	canonical	3	390	junction_1	128.516496201532	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCTGTGATCCGTACG	NA	False	NA	NA	False	NA	NA	NA	50101618	50090981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
50706	chr15	+	1131	10	NIC	ENSMUSG00000022337.8	novel	1231	11	NA	NA	23	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	238.228648337871	8	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGAAAATTCTAGTTTC	NA	False	NA	NA	False	NA	NA	NA	43340659	43391159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_43340722_43355565_43355680_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
50709	chr3	-	2496	15	FSM	ENSMUSG00000039865.9	ENSMUST00000039197.9	2620	15	124	0	124	0	multi-exon	FALSE	canonical	2	7	junction_10	3.70672307009404	63	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTTTGTTCATCTTTT	NA	False	NA	NA	False	NA	NA	NA	121325929	121253176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_121253726_121254750_121254988_121257062_121257201_121279910_121279998_121283846_121284004_121291367_121291534_121303022_121303210_121303840_121303966_121305970_121306061_121307305_121307467_121318475_121318570_121319315_121319453_121320712_121320856_121325315_121325421_121325809
50711	chr5	-	1190	6	NNC	ENSMUSG00000029433.17	novel	1576	6	NA	NA	0	-151	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	331.299864171418	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGGAGCTGGGGGCCCTG	8965	False	NA	NA	False	NA	NA	NA	123662196	123649918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123650277_123650329_123650771_123655799_123655897_123656017_123656122_123661317_123661445_123662133
50712	chr6	-	1748	6	NIC	ENSMUSG00000032641.19	novel	2075	5	NA	NA	213	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	28.2517256110136	158	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAAAGTGAGAATTGATT	NA	False	NA	NA	False	NA	NA	NA	134875328	134846126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134847446_134854179_134854298_134863853_134863900_134864592_134864749_134874124_134874177_134875271
50713	chr8	-	1736	1	Antisense	novelGene_ENSMUSG00000031442.22_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	86	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGTCCGTCTTCCGGTCTT	NA	False	NA	NA	False	NA	NA	NA	13065328	13063592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_13063600_13065300
50714	chr1	-	2432	8	Antisense	novelGene_ENSMUSG00000104394.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCCGGAAGCCGGCTGG	NA	False	NA	NA	False	NA	NA	NA	187081627	186947718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_186947871_186957693_186958415_186962978_186963046_186965329_186965509_186965941_186966023_187036525_187036595_187073683_187073770_187080550
50715	chr1	-	1927	9	NIC	ENSMUSG00000033159.15	novel	3669	9	NA	NA	46	-2	combination_of_known_junctions	FALSE	canonical	2	8	junction_8	51.6876133614235	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGGCCTGGCCTTTTCCT	6840	False	NA	NA	False	NA	NA	NA	75118401	75112416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118343
50716	chr8	-	2461	7	ISM	ENSMUSG00000031958.17	ENSMUST00000070004.4	2273	11	1166	-658	-621	-110	3prime_fragment	FALSE	canonical	2	7	junction_4	3.60555127546399	57	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTTTGCCTTATTTGC	NA	False	NA	NA	False	NA	NA	NA	112355840	112352244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_112353823_112353909_112354022_112354119_112354211_112354730_112354859_112354941_112355071_112355152_112355353_112355617
50717	chr19	+	2431	13	NNC	ENSMUSG00000025036.8	novel	3205	12	NA	NA	25	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	14.6657196663966	147	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATTTGAAAGAACATGAAA	NA	False	NA	NA	False	NA	NA	NA	46561830	46585320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110_46584079_46584813
50718	chr1	-	2472	13	FSM	ENSMUSG00000026626.12	ENSMUST00000067976.9	3088	13	614	2	-108	-2	multi-exon	FALSE	canonical	3	325	junction_3	33.6760506723827	215	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCATTTGCTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	191128624	191084173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_191085307_191086070_191086173_191086727_191086856_191086938_191087059_191087219_191087271_191088530_191088585_191089083_191089193_191089988_191090049_191091121_191091253_191094445_191094539_191100837_191100940_191104666_191104864_191128432
50719	chr1	+	4078	12	ISM	ENSMUSG00000026447.18	ENSMUST00000077730.7	7928	33	47738	10	25171	-10	3prime_fragment	FALSE	canonical	2	9	junction_2	2.99586491877892	14	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGAGAAACAAAGCTATC	1122	False	NA	NA	False	NA	NA	NA	133021487	133036415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_133021524_133022435_133022573_133026368_133026539_133026890_133027048_133027342_133027453_133028462_133028665_133029067_133029193_133030017_133030136_133031090_133031173_133031538_133031646_133032724_133032854_133033710
50721	chr6	-	2260	12	NNC	ENSMUSG00000030353.16	novel	1718	12	NA	NA	3655	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	34.4891886281978	182	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATCTGCGCTCGTGTGAT	5087	False	NA	NA	False	NA	NA	NA	128274046	128201249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128202049_128205523_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128273812
50722	chr16	-	909	3	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	25	646	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3044.5	25	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	NA	False	NA	NA	NA	95928904	95922787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923552_95928631_95928662_95928789
50723	chr7	+	1962	13	NNC	ENSMUSG00000035704.18	novel	2039	13	NA	NA	6	-26	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	39.2205303380768	256	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAAAGTGTTTTGGGTCC	NA	False	NA	NA	False	NA	NA	NA	97020818	97041366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97032969_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
50725	chr6	-	1084	1	ISM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	48563	5331	32594	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGGAGATAAACTCTGGA	NA	False	NA	NA	False	NA	NA	NA	144945975	144944891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_144944900_144946000
50726	chr14	+	3089	5	NIC	ENSMUSG00000004561.15	novel	1461	13	NA	NA	0	155	intron_retention	FALSE	canonical	3	177	junction_2	11.3247516529061	1	128	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTAGGGTATCCATCCCC	NA	False	NA	NA	False	NA	NA	NA	52122374	52127196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52124437_52124679_52124762_52125429_52125504_52126198
50727	chr11	+	359	3	ISM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	21	1210	21	128	5prime_fragment	FALSE	canonical	3	1458	junction_2	21.5	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGTCTACCTTTATGT	NA	False	NA	NA	False	NA	NA	NA	72098393	72099631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72098595_72099078_72099161_72099555
50728	chr15	+	2136	3	ISM	ENSMUSG00000022303.10	ENSMUST00000022913.6	1997	4	8068	9	8056	-5	3prime_fragment	FALSE	canonical	3	14	junction_1	5	104	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATATGTTGCCTTGATCA	NA	False	NA	NA	False	NA	NA	NA	39617395	39624325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_39618622_39622709_39623019_39623724
50729	chr11	+	1144	6	NNC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	0	-184	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2056.82761552834	2	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	NA	False	NA	NA	NA	52122863	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135893_52136839
50730	chr7	-	1891	2	ISM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	3167	11	2841	-11	intron_retention	FALSE	canonical	3	129	junction_1	0	8	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAACTAGAGCCCGAAAG	NA	False	NA	NA	False	NA	NA	NA	44643836	44640656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44640879_44642167
50732	chr2	+	1643	5	NIC	ENSMUSG00000002728.15	novel	1172	6	NA	NA	-2	-109	intron_retention	FALSE	canonical	3	961	junction_2	190.755570036631	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTCTGGAAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	145745179	145758236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_145745283_145750510_145750536_145753592_145754449_145757453_145757600_145757723
50733	chr2	-	942	7	FSM	ENSMUSG00000027165.17	ENSMUST00000111231.10	2273	7	-17	1348	2	-4	multi-exon	FALSE	canonical	3	119	junction_5	14.4299072146089	544	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGATTCCCTCTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	101459352	101392473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101459225
50734	chr9	-	3154	18	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	-55	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	83.6597574542327	1	190	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACTTATTTCTTACAAA	NA	False	NA	NA	False	NA	NA	NA	53159408	53009955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115819_53118761_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
50735	chr10	-	3390	4	Intergenic	novelGene_3393	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	173	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAGAACGCCCCAGCCC	NA	False	NA	NA	False	NA	NA	NA	13006353	12966578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_12966769_13000551_13000911_13002883_13004741_13005369
50736	chr12	+	1434	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	23	-2	1	2	multi-exon	FALSE	canonical	3	155	junction_3	35.1318217284442	931	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATCTAGTTTGAGTTACT	NA	False	NA	NA	False	NA	NA	NA	28699623	28709590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
50739	chr12	+	2082	2	NNC	ENSMUSG00000043061.11	novel	762	3	NA	NA	1844	-1	at_least_one_novel_splicesite	FALSE	non_canonical	3	81	junction_1	0	1	100	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATATACAGTGTGCTTTCG	NA	False	NA	NA	False	NA	NA	NA	30638756	30641213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_30640423_30640797
50740	chr10	+	1182	10	NIC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	40	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	1272.09166724594	3786	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGGCTTAGGATAGTT	2161	False	NA	NA	False	NA	NA	NA	61484439	61509944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61508169_61508213_61509597
50741	chr9	+	1796	3	ISM	ENSMUSG00000037784.15	ENSMUST00000112884.2	3791	16	28816	-91	13461	-2	3prime_fragment	FALSE	canonical	3	15	junction_2	4.5	12	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGTCGTTCTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	99545729	99551307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_99545770_99547767_99547908_99549691
50742	chr18	+	2516	3	FSM	ENSMUSG00000033272.13	ENSMUST00000170288.2	403	3	22	-2135	-4	-16	multi-exon	FALSE	canonical	3	17	junction_1	222	625	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGTGCTTCCTACAACC	NA	False	NA	NA	False	NA	NA	NA	36812657	36816890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36812677_36813480_36813668_36814580
50744	chr11	+	3775	25	ISM	ENSMUSG00000020758.16	ENSMUST00000068981.13	5584	38	10812	91	-1340	-90	3prime_fragment	FALSE	canonical	1	3	junction_2	5.62669727479827	15	39	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACCAAAAAA	1901	False	NA	NA	False	NA	NA	NA	115879423	115899147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_115879582_115879715_115879846_115880544_115880668_115880763_115880871_115881500_115881535_115881709_115881902_115882134_115882239_115882483_115882543_115882711_115882736_115883880_115884030_115884102_115884283_115885087_115885237_115888775_115888981_115890623_115890782_115891064_115891246_115891368_115891507_115894167_115894351_115894428_115894561_115896356_115896594_115897286_115897437_115897811_115898001_115898084_115898241_115898326_115898492_115898580_115898692_115898786
50745	chr13	-	3115	2	Genic_Genomic	ENSMUSG00000021495.11	novel	2950	9	NA	NA	212	-12403	multi-exon	FALSE	non_canonical	0	0	junction_1	0	124	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGCCCAAAGCCAGCCTT	NA	False	NA	NA	False	NA	NA	NA	55718701	55715179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_55716757_55717163
50746	chr14	-	1664	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	59	10	2	5	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	1814	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGACAATTTTCTTTAA	2344	False	NA	NA	False	NA	NA	NA	55897906	55895345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
50747	chr14	-	2676	11	ISM	ENSMUSG00000021816.12	ENSMUST00000022355.11	3074	13	15484	0	-6985	0	3prime_fragment	FALSE	canonical	3	28	junction_1	61.3847700981278	1	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTGTGTTGGGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	20581096	20550097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_20551731_20558691_20558790_20559483_20559569_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011
50749	chr13	-	1383	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	588	0	-588	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTGGGACTTCAGT	NA	False	NA	NA	False	NA	NA	NA	64518120	64511615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
50750	chr11	+	1551	4	NIC	ENSMUSG00000018286.7	novel	798	6	NA	NA	-8	-4	intron_retention	FALSE	canonical	3	5742	junction_3	340.856111708282	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGAGACGTTTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	70416184	70418471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70417252_70417369_70417500_70418004_70418150_70418262
50751	chr13	-	942	2	Genic_Genomic	ENSMUSG00000057762.7	novel	1030	1	NA	NA	-104	-44	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATGTTTAAGTCTAAAAA	NA	False	NA	NA	False	NA	NA	NA	97235849	97234759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_97235385_97235532
50752	chr5	+	868	1	FSM	ENSMUSG00000070697.5	ENSMUST00000090413.6	1629	1	750	11	750	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAAGTGATTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	88703070	88703938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_88703100_88703900
50753	chr2	-	1084	5	FSM	ENSMUSG00000039128.14	ENSMUST00000150876.2	562	5	-110	-412	-20	412	multi-exon	FALSE	canonical	3	1033	junction_1	96.4507646418627	35	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGATTAAATATGATTTG	NA	False	NA	NA	False	NA	NA	NA	5849772	5827214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
50755	chr17	+	2839	9	FSM	ENSMUSG00000043592.16	ENSMUST00000074574.13	2838	9	-10	9	-10	-1	multi-exon	TRUE	canonical	1	5	junction_1	7.66383552798467	44	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAAAATACTGGTACTT	NA	False	NA	NA	False	NA	NA	NA	48761918	48775705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_48762001_48766566_48767013_48767512_48767814_48769203_48769467_48770389_48770492_48770604_48770673_48771469_48771571_48771943_48772058_48774343
50756	chr11	+	1131	7	ISM	ENSMUSG00000017781.18	ENSMUST00000179445.8	1665	12	20998	8	-11554	-8	3prime_fragment	FALSE	canonical	3	596	junction_2	36.044725303742	134	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGAGTCATTGCATCTCTG	9478	False	NA	NA	False	NA	NA	NA	75499942	75517548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
50757	chr19	+	2769	2	ISM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	11243	0	10981	0	3prime_fragment	FALSE	canonical	3	98	junction_1	0	234	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTATCTCCTGTGGCT	5771	False	NA	NA	False	NA	NA	NA	8808616	8811507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8808697_8808818
50758	chr19	+	3264	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	10	0	10	0	multi-exon	FALSE	canonical	3	204	junction_1	0	324	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCAGTGTTTCTATCTG	NA	False	NA	NA	False	NA	NA	NA	8870378	8875252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8870513_8872122
50759	chr11	-	2050	9	NNC	ENSMUSG00000018593.14	novel	2115	10	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	308.142722614051	1	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3889	False	NA	NA	False	NA	NA	NA	55310693	55285325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290019_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55300728_55300824_55310613
50762	chr11	+	1493	6	NNC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	-1722	-94	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	197.378418273123	1	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTAAATGTCTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	62772765	62785917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782844_62784947
50763	chr18	+	3170	4	FSM	ENSMUSG00000024542.10	ENSMUST00000224387.2	1425	4	-21	-1724	-15	1724	multi-exon	FALSE	canonical	3	112	junction_2	11.1455023315337	9	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGGGAACTCTGTGCC	92	False	NA	NA	False	NA	NA	NA	67933161	67940171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435
50764	chr8	-	2363	2	ISM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	7020	-247	7012	247	3prime_fragment	FALSE	canonical	3	127	junction_1	0	143	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTTAATAAAAACTTAACT	5044	False	NA	NA	False	NA	NA	NA	106930545	106927101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_106927782_106928862
50765	chr7	+	2991	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	53	21	53	-21	multi-exon	FALSE	canonical	3	24	junction_1	56.3067853960129	1	116	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAGATGAAAATATTCT	NA	False	NA	NA	False	NA	NA	NA	97492194	97561567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
50767	chr2	+	2109	6	NNC	ENSMUSG00000002102.16	novel	944	9	NA	NA	16	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	956.474150199575	1	113	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGACGGCTTTCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	90884415	90888172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90884668_90884919_90885004_90885323_90885452_90885802_90886388_90887002_90887147_90887256
50769	chr2	+	2931	8	NIC	ENSMUSG00000027575.20	novel	2639	12	NA	NA	299	639	intron_retention	FALSE	canonical	3	252	junction_2	14.7052676942375	4	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGCAGCTGGAATTATA	4399	False	NA	NA	False	NA	NA	NA	180609391	180620474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180615341_180615852_180615950_180618099_180618157_180619112
50771	chr13	+	1686	13	NIC	ENSMUSG00000021694.19	novel	2111	12	NA	NA	-10	-464	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	29.7918706286724	4	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACTTGTCTCCTTGAG	NA	False	NA	NA	False	NA	NA	NA	108295326	108331047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
50773	chr7	+	1013	3	ISM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	7878	2	2594	-2	3prime_fragment	FALSE	canonical	3	2756	junction_1	54	6	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCCTGTCTGGTGCCTA	NA	False	NA	NA	False	NA	NA	NA	27877012	27878692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27877743_27878322_27878469_27878555
50775	chrX	-	1792	8	FSM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	-27	0	-27	0	multi-exon	FALSE	canonical	3	78	junction_3	4.33777898591114	360	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCGTTTTAATTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	132799205	132791816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_132792673_132793410_132793516_132795247_132795332_132795676_132795812_132796183_132796283_132797431_132797507_132797872_132798062_132798956
50776	chr9	-	771	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5739.8509780307	603	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386280_78387588_78387703_78387792_78387971_78388920
50777	chr3	-	2870	1	FSM	ENSMUSG00000048109.11	ENSMUST00000197769.2	5967	1	4285	-1188	4285	-526	mono-exon	FALSE	NA	NA	NA	NA	NA	78	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAAATGTTTTTCTGCCTG	3432	False	NA	NA	False	NA	NA	NA	107236132	107233262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107233300_107236100
50778	chr15	+	2477	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	11	-2	11	2	multi-exon	FALSE	canonical	3	106	junction_1	0	237	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTAATTGGCATATC	NA	False	NA	NA	False	NA	NA	NA	75812811	75821251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_75813009_75818971
50779	chr12	-	2140	8	FSM	ENSMUSG00000021234.10	ENSMUST00000021659.2	3357	8	33	1184	4	-9	multi-exon	FALSE	canonical	1	2	junction_6	4.96929346597888	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTCTACCAAAAAATATAA	450	False	NA	NA	False	NA	NA	NA	84408562	84393274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84403252_84404301_84404625_84408465
50780	chr12	-	1236	1	NIC	ENSMUSG00000021234.10	novel	3000	9	NA	NA	8306	3	mono-exon	FALSE	NA	NA	NA	NA	NA	26	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGATGTTTGAGATATTTT	7644	False	NA	NA	False	NA	NA	NA	84393323	84392087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84392100_84393300
50781	chr11	-	1654	8	FSM	ENSMUSG00000053654.8	ENSMUST00000017270.8	1542	8	-115	3	-115	-3	multi-exon	FALSE	canonical	3	51	junction_5	18.9510648023497	248	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCTTGAATTCATCATT	NA	False	NA	NA	False	NA	NA	NA	100160812	100153715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235
50782	chr19	-	1182	6	NIC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	33	-636	intron_retention	FALSE	canonical	1	1	junction_5	466.854409853864	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTGTGCGCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	7183107	7176210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183011
50783	chr19	+	1326	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	155	383	155	-383	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	2	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAACAAGTCTTGCCAG	998	False	NA	NA	False	NA	NA	NA	8944559	8955460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
50785	chr11	-	2992	10	NNC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	124	0	intron_retention	FALSE	canonical	2	5	junction_4	84.5928520460444	1	137	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8496	False	NA	NA	False	NA	NA	NA	82799044	82791597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794958_82795065_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917
50786	chr8	+	3120	9	ISM	ENSMUSG00000054823.18	ENSMUST00000146919.8	3652	10	38346	26	-33806	-4	3prime_fragment	FALSE	canonical	3	19	junction_8	31.8156309854134	50	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAAAAAAAAAAATTCCA	NA	False	NA	NA	False	NA	NA	NA	26130645	26167962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26166718
50787	chr7	-	3767	21	FSM	ENSMUSG00000039062.16	ENSMUST00000107392.8	3797	21	11	19	-6	-18	multi-exon	FALSE	canonical	1	4	junction_7	3.71853465763061	27	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAATTTCTAAAATGAG	6811	False	NA	NA	False	NA	NA	NA	79497947	79471569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79472125_79475050_79475133_79475453_79475595_79476339_79476508_79476618_79476730_79477319_79477412_79483334_79483483_79484877_79484934_79485034_79485169_79485716_79485791_79485978_79486155_79487989_79488056_79488160_79488227_79488394_79488539_79488635_79488750_79488910_79489066_79489149_79489277_79490620_79490758_79490833_79490977_79491385_79492409_79497892
50788	chr4	+	794	1	ISM	ENSMUSG00000028468.16	ENSMUST00000107886.9	5888	9	7976	3	5477	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTTAAGTGTCTAATTT	7743	False	NA	NA	False	NA	NA	NA	43586690	43587484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_43586700_43587500
50789	chr17	+	1796	3	Antisense	novelGene_ENSMUSG00000023940.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATCAGTAGACTCAACTT	NA	False	NA	NA	False	NA	NA	NA	53982853	53986655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_53983742_53983934_53984122_53985934
50790	chr7	+	985	4	NIC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	3	intron_retention	FALSE	canonical	3	7451	junction_1	3695.09593921457	408	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTTGCATCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	109118402	109120976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_109118430_109118791_109118856_109119124_109119850_109120807
50791	chr3	-	2304	3	NNC	ENSMUSG00000043300.3	novel	2028	3	NA	NA	2666	243	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	24	47	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACCATGGAGTTGGGAG	NA	False	NA	NA	False	NA	NA	NA	69503627	69481247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_69483294_69486658_69486725_69503435
50792	chr8	-	2652	14	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	32	-340	intron_retention	FALSE	non_canonical	0	0	junction_2	1250.18922591411	1	132	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAAGAGATGCTGCAGTA	NA	False	NA	NA	False	NA	NA	NA	26337690	26307353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26308673_26309658_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318884_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
50793	chr3	-	1462	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	-16	3	combination_of_known_junctions	FALSE	canonical	3	53	junction_5	52.0292225580971	349	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	95789402	95785811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789266
50794	chr19	-	2459	10	FSM	ENSMUSG00000024972.17	ENSMUST00000159983.8	2470	10	11	0	-4	0	multi-exon	FALSE	canonical	2	3	junction_8	5.03322295684717	72	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACTCATATGTTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	7584547	7574024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7580373_7580494_7581333_7581548_7581668_7581758_7584026_7584189_7584491
50795	chr10	-	1206	7	NNC	ENSMUSG00000000296.9	novel	1308	7	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	231.746568954585	1208	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGGCTGGATCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	31321845	31208373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_31208966_31214180_31214242_31217135_31217175_31222597_31222709_31233867_31234017_31255210_31255327_31321707
50796	chrX	+	1560	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	30	5	12	-5	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	2	75	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGCCTGACAATTTTT	NA	False	NA	NA	False	NA	NA	NA	74557934	74578543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
50797	chr8	+	1541	5	NNC	ENSMUSG00000005413.9	novel	774	2	NA	NA	186	1	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	92.3102784092866	81	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAAGTGCATTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	75820434	75827218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75820558_75822483_75822605_75823477_75823970_75825393_75825494_75826513
50798	chr14	-	318	2	NNC	ENSMUSG00000067995.5	novel	1467	8	NA	NA	-34	-98557	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGAGAACACCCATTTGT	NA	False	NA	NA	False	NA	NA	NA	76248339	76232933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76233032_76248119
50801	chr16	+	2780	1	FSM	ENSMUSG00000118559.3	ENSMUST00000239037.2	3972	1	43	1149	43	-1149	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAGCTTTGAATGCATAA	NA	False	NA	NA	False	NA	NA	NA	13572472	13575252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13572500_13575300
50802	chr7	+	1917	1	Intergenic	novelGene_2935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGAGGCAGAGGCAGCTG	NA	False	NA	NA	False	NA	NA	NA	42335004	42336921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42335000_42336900
50803	chr1	+	2192	4	NNC	ENSMUSG00000026097.10	novel	1910	4	NA	NA	-9	-72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	97.3869715219763	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGATTATTTTAAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	53336244	53349396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_53336348_53338130_53338657_53344613_53344766_53347985
50804	chr7	+	1549	11	FSM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	16	14	16	-14	multi-exon	FALSE	canonical	3	295	junction_2	15.0053323855222	509	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGTGTTAAAAACATTGA	NA	False	NA	NA	False	NA	NA	NA	127511703	127524995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
50807	chr11	+	3921	6	FSM	ENSMUSG00000045671.18	ENSMUST00000093298.12	2852	6	372	-1441	372	-8	multi-exon	TRUE	canonical	3	51	junction_2	8.95767827062348	170	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCCGACTATTGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	19874813	19974018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_19874957_19948119_19948298_19955781_19955951_19958412_19958478_19968051_19968190_19970790
50808	chr2	-	912	9	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-7	-34	combination_of_known_splicesites	FALSE	canonical	1	69	junction_5	1458.17855130982	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTATCTTACAATAAACAAC	9580	False	NA	NA	False	NA	NA	NA	10085245	10060874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068917_10069123_10073420_10073553_10074503_10074539_10085158
50810	chr17	+	2483	11	NNC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	-12	-128	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	136.387132824178	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCAGTTTCCCATGGAA	NA	False	NA	NA	False	NA	NA	NA	26780506	26875777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040_26874726_26874824
50811	chrX	+	1577	5	FSM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	-34	-116	-34	116	multi-exon	FALSE	canonical	3	124	junction_4	18.2397231338636	423	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGTGTACATCGTTTTCCA	NA	False	NA	NA	False	NA	NA	NA	52726758	52740524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_52727016_52729333_52729516_52735693_52735827_52738241_52738355_52739632
50812	chr5	+	1062	7	NNC	ENSMUSG00000029177.10	novel	1007	7	NA	NA	-9	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	788.583416992493	1891	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGAGCCGTGGCAGT	9215	False	NA	NA	False	NA	NA	NA	30824269	30831744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30824458_30827035_30827189_30827732_30827755_30829807_30829915_30830325_30830404_30830636_30830788_30831381
50813	chr17	+	1844	1	Intergenic	novelGene_118	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	81	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAGTGGAAGGGGAAGGA	NA	False	NA	NA	False	NA	NA	NA	30440518	30442362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_30440500_30442400
50815	chr5	-	1276	5	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	184	-2350	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	309.859242237504	2	21	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACGAAGCTCACTTCA	NA	False	NA	NA	False	NA	NA	NA	65777759	65767462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65767539_65772606_65772948_65776286_65776396_65776962_65777124_65777170
50816	chr11	+	2498	12	NNC	ENSMUSG00000017499.16	novel	4614	12	NA	NA	23	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	299.862420243651	1	137	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCGTTTGTCTGGGCTGC	23	False	NA	NA	False	NA	NA	NA	98798697	98812714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98798808_98799462_98799657_98801012_98801293_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804845_98805913_98806015_98807779_98807849_98810028_98810232_98811498_98811640_98811941
50819	chr7	-	957	5	NIC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_4	2125.21728300896	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6504	False	NA	NA	False	NA	NA	NA	121700963	121690053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700450
50820	chr5	-	2218	4	NIC	ENSMUSG00000029718.15	novel	1585	10	NA	NA	-11	126	intron_retention	FALSE	canonical	3	231	junction_3	142.136866747825	16	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATCCCAACCTGCAGAGA	4123	False	NA	NA	False	NA	NA	NA	137609649	137605153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_137605370_137605669_137607412_137608658_137608768_137609498
50822	chr8	+	1988	9	NNC	ENSMUSG00000019139.11	novel	1916	10	NA	NA	15	0	intron_retention	FALSE	canonical	0	0	junction_5	133.63096338424	1	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTGTGTGCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	71047154	71049940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048507_71048599_71048816_71048897_71049260_71049343_71049562_71049646
50824	chr11	-	1407	4	Antisense	novelGene_ENSMUSG00000038845.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.471404520791032	2	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATTGACGTTCTGCAAGT	9416	False	NA	NA	False	NA	NA	NA	95571591	95565987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_95566110_95566394_95566510_95568874_95568971_95570517
50825	chr3	-	1186	5	Intergenic	novelGene_3191	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCGAGAAGCGGCCTCTC	NA	False	NA	NA	False	NA	NA	NA	144303425	144276110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_144276172_144283345_144283513_144296370_144296434_144300658_144300710_144302581
50826	chr4	+	981	5	NNC	ENSMUSG00000029038.10	novel	1472	5	NA	NA	-3	-95	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	731.709428325206	7	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAAGTGTCTGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	155789577	155818241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155789841_155799915_155800063_155815781_155815922_155816383_155816503_155817929
50829	chr7	-	1058	3	FSM	ENSMUSG00000003429.12	ENSMUST00000211583.2	514	3	-21	-523	-21	4	multi-exon	FALSE	canonical	3	18027	junction_1	6373.5	166	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGAACAGGCTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	44773796	44771812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44772663_44772842_44772975_44773720
50830	chr9	+	2615	7	NNC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	-1249	-44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	65.7860589757097	1	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTGTCATTTCAGAAA	7954	False	NA	NA	False	NA	NA	NA	69322747	69340360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_69323644_69324215_69324392_69328942_69329073_69332938_69333042_69334132_69334184_69335635_69335857_69339322
50831	chr10	+	1599	4	ISM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	71	0	32	0	intron_retention	FALSE	canonical	3	742	junction_3	22.6862660362314	96	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	81220332	81224186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073
50832	chr19	-	3275	4	Antisense	novelGene_ENSMUSG00000024691.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	164	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACCAGACTGTCATTTG	7116	False	NA	NA	False	NA	NA	NA	12567123	12550880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_12550952_12554461_12554535_12561286_12561480_12564185
50833	chr2	+	1023	1	FSM	ENSMUSG00000092827.3	ENSMUST00000175086.3	76	1	-116	-831	-116	831	mono-exon	FALSE	NA	NA	NA	NA	NA	71	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	179899212	179900235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_179899200_179900200
50834	chr7	+	1577	10	NNC	ENSMUSG00000073838.11	novel	1679	10	NA	NA	77	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	207.652190209411	1	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	126086626	126089899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088429_126088519_126088613_126088723_126088876_126088963_126089084_126089492
50836	chr15	+	2255	9	ISM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	8724	12	521	-12	3prime_fragment	FALSE	canonical	3	1506	junction_8	141.701049749111	1	136	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAACCTTTGCTGGTGTC	4241	False	NA	NA	False	NA	NA	NA	99299486	99307918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
50839	chr13	-	3821	2	ISM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	23174	8830	23112	-7025	internal_fragment	FALSE	canonical	3	806	junction_1	0	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAACATCTTTATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	104291803	104287486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_104290849_104291344
50840	chr17	-	411	2	Antisense	novelGene_ENSMUSG00000040312.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCGCACGCATATCCACA	9273	False	NA	NA	False	NA	NA	NA	35832074	35831297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35831383_35831748
50842	chr7	+	960	8	ISM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	4918	4	-244	-4	3prime_fragment	FALSE	canonical	3	2081	junction_2	289.060970900534	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCCCCTGTCTGGTGCC	NA	False	NA	NA	False	NA	NA	NA	27874052	27878690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
50843	chr11	+	2692	16	ISM	ENSMUSG00000020908.15	ENSMUST00000108689.8	6031	41	15370	0	15370	0	3prime_fragment	TRUE	canonical	2	13	junction_1	5.25187797099497	23	33	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTTGTTTTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	66984495	66993112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
50844	chr13	-	3277	8	NNC	ENSMUSG00000021556.13	novel	3689	11	NA	NA	24423	0	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_7	175.476261549381	2	165	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	59799163	59782809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59799055
50845	SIRV6	-	785	3	Antisense	novelGene_SIRV6A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACGTCGTTACCCATGT	NA	False	NA	NA	False	NA	NA	NA	11330	10237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV6_-_10825_11035_11109_11205
50846	chr17	+	775	1	Intergenic	novelGene_58	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGTTAAATTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	17543358	17544133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17543400_17544100
50848	chr5	+	1807	16	NNC	ENSMUSG00000029227.16	novel	1969	16	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	206.208890852617	1	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTAAAAAGCTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	74696178	74756804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752532_74755734_74755873_74756499
50849	chr11	-	1733	14	NNC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	977.739495320742	3	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAAATGTTTTGACCGT	5967	False	NA	NA	False	NA	NA	NA	100510409	100473664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100473963_100474419_100474483_100475032_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486986_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
50850	chr2	+	1617	2	ISM	ENSMUSG00000068062.4	ENSMUST00000128577.2	1999	5	25185	25	-3894	-25	3prime_fragment	FALSE	canonical	2	3	junction_1	0	11	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAAATAAAACCAGTGGA	NA	False	NA	NA	False	NA	NA	NA	152212773	152217219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_152212891_152215719
50851	chr9	+	1136	7	FSM	ENSMUSG00000031939.17	ENSMUST00000034415.6	1148	7	13	-1	13	1	multi-exon	FALSE	canonical	3	55	junction_6	190.157317912184	63	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9085	False	NA	NA	False	NA	NA	NA	15217522	15223401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
50853	chr17	+	1900	7	ISM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	11021	0	6380	0	3prime_fragment	FALSE	canonical	3	2616	junction_4	121.673972383397	1	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	88293510	88298320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
50854	chr2	-	1148	5	Antisense	novelGene_ENSMUSG00000052533.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	125	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTCTGAGGAGAGTC	3365	False	NA	NA	False	NA	NA	NA	30234275	30232552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30232800_30232930_30233064_30233284_30233361_30233472_30233600_30233710
50855	chr11	+	1183	3	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-14	multi-exon	FALSE	non_canonical	0	0	junction_2	980	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849_120654537_120654932
50856	chr6	-	1838	9	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	79	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1859.0021138705	2	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9348	False	NA	NA	False	NA	NA	NA	128415561	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407844_128409384_128409541_128410518_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
50858	chr7	+	3007	15	FSM	ENSMUSG00000030774.14	ENSMUST00000206984.2	2794	15	281	-494	281	-4	multi-exon	TRUE	canonical	3	118	junction_1	35.6279671159656	139	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACAGGAAGTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	97438028	97561584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_97438182_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
50859	chr14	-	1383	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	4	-38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1369.07094410772	1	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCCTGGAATACTAATTAA	NA	False	NA	NA	False	NA	NA	NA	63746201	63729833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730291_63731190_63731461_63731805_63731897_63733168_63733324_63733535_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
50860	chr11	-	1215	3	NIC	ENSMUSG00000058546.9	novel	588	4	NA	NA	28	-5	intron_retention	FALSE	canonical	3	18151	junction_2	351	42	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAATGCTGCTTGTCA	5991	False	NA	NA	False	NA	NA	NA	78074382	78071765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_78072050_78072242_78072420_78073628
50861	chr14	+	1723	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	35	4	-17	-1	multi-exon	FALSE	canonical	3	2255	junction_1	40	3	99	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACACGTGTTTCTATATG	6574	False	NA	NA	False	NA	NA	NA	76741952	76745201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76742282_76742688_76742738_76743856
50862	chr17	+	3751	25	NNC	ENSMUSG00000033826.11	novel	16685	93	NA	NA	0	13792	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_24	13.3556453939482	36	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCTATTAAAAAGTATATG	199	False	NA	NA	False	NA	NA	NA	30845908	30917317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942_30877045_30880959_30881107_30882271_30882470_30887247_30887325_30889585_30889686_30891213_30891334_30892753_30892890_30896060_30896249_30902604_30902686_30903104_30903222_30905356_30905477_30909154_30909291_30912922_30913036_30914083_30914191_30917154
50863	chr2	-	1803	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	0	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTGTGTGGTTTGATA	NA	False	NA	NA	False	NA	NA	NA	152185908	152179368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180047_152180198_152180608_152181634_152181928_152184956_152185248_152185776
50864	chr9	-	2664	16	NNC	ENSMUSG00000047766.16	novel	3017	17	NA	NA	13	-26	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_12	6.816320284598	3	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAGTGAAGAATAAATACA	3508	False	NA	NA	False	NA	NA	NA	60595428	60494547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584461_60587351_60587455_60592317_60592406_60594421_60594479_60595094
50865	chr4	+	935	4	Antisense	novelGene_ENSMUSG00000028639.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	140	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTACGACGTGGATAGCG	1719	False	NA	NA	False	NA	NA	NA	119135177	119139541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_119135565_119136130_119136396_119138765_119138849_119139341
50866	chr12	+	1653	5	NIC	ENSMUSG00000071379.3	novel	1526	4	NA	NA	-45	-4	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	31.8541598539343	352	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	8579	False	NA	NA	False	NA	NA	NA	17740811	17841930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_17741048_17817214_17817301_17836147_17836550_17837545_17837652_17841107
50867	chr17	-	2772	3	NIC	ENSMUSG00000024208.17	novel	500	4	NA	NA	15	0	intron_retention	FALSE	canonical	3	2777	junction_2	144.5	6	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCTGGTTTGGAACTCA	1976	False	NA	NA	False	NA	NA	NA	27352861	27341641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27344191_27344857_27344933_27352713
50868	chr10	+	4266	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	125	1046	-79	-13	intron_retention	FALSE	canonical	3	69	junction_7	9.81666256450355	116	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACCTCAAGAATTGCCCA	NA	False	NA	NA	False	NA	NA	NA	82534965	82577216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
50869	chr9	-	2137	8	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	-5665	-3	intron_retention	FALSE	canonical	0	0	junction_6	88.0581904081567	1	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGTGTGGTGTGCTGA	NA	False	NA	NA	False	NA	NA	NA	21720962	21711478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714420_21716014_21716147_21720816
50871	chr1	-	6062	28	FSM	ENSMUSG00000052331.15	ENSMUST00000179030.8	6140	28	59	19	26	-17	multi-exon	FALSE	canonical	1	2	junction_15	2.70395737013985	10	30	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACAAATATTGTTGCAAT	NA	False	NA	NA	False	NA	NA	NA	54965487	54684517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_54687495_54690827_54690920_54692901_54692985_54694238_54694322_54694819_54694966_54696774_54696859_54698077_54698166_54700159_54700377_54701812_54701931_54703057_54703146_54706530_54706733_54720278_54720351_54762172_54762285_54766648_54766730_54768892_54769034_54772086_54772156_54774154_54774219_54775388_54775472_54782472_54782588_54792048_54792128_54801419_54801633_54802803_54802947_54805508_54805597_54805942_54806144_54817445_54817517_54831611_54831691_54867770_54867855_54965298
50872	chr13	+	1842	15	Intergenic	novelGene_1518	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCCTGAAATGGCTGCG	NA	False	NA	NA	False	NA	NA	NA	98993396	99062827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_98993483_98994892_98995066_98996270_98996500_98997154_98997301_99000214_99000387_99000937_99000995_99001474_99001598_99003552_99003679_99006749_99006828_99012109_99012243_99015124_99015232_99021019_99021173_99024973_99025050_99027184_99027299_99062758
50873	chr5	-	2094	11	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	24	-259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	245.021305196099	1	87	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34093570	34055518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056898_34057752_34057825_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
50874	chr18	-	1310	8	NIC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	15	-50	intron_retention	FALSE	canonical	3	1190	junction_5	92.9252497484743	25	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTGCCTTTAAACTTTG	NA	False	NA	NA	False	NA	NA	NA	77855465	77845318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
50875	chr12	+	1502	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2521	-2	798	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	10	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAGACCATTAACTTAA	9257	False	NA	NA	False	NA	NA	NA	100165785	100173552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
50876	chr8	-	560	1	Intergenic	novelGene_1760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCTGGGTGTGGTGGAG	NA	False	NA	NA	False	NA	NA	NA	112671036	112670476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_112670500_112671000
50878	chr4	-	696	1	NIC	ENSMUSG00000060288.14	novel	757	10	NA	NA	8891	483	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAATAAGCCCAAACTGC	8099	False	NA	NA	False	NA	NA	NA	119168723	119168027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_119168000_119168700
50879	chr11	-	2394	17	NNC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	283.821466770926	2	122	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAAATTTGACTTTGCT	NA	False	NA	NA	False	NA	NA	NA	70860787	70833910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834797_70834927_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849108_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
50880	chr7	+	2419	17	NNC	ENSMUSG00000030471.18	novel	2410	17	NA	NA	-9	-5	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_5	72.8713549688765	316	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGACTTAGTTTCTAAT	NA	False	NA	NA	False	NA	NA	NA	48438764	48477183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454069_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
50881	chr16	+	3523	17	FSM	ENSMUSG00000118669.2	ENSMUST00000239547.1	4232	17	-3	712	-3	103	multi-exon	FALSE	canonical	3	221	junction_7	30.582815333942	106	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAACTGCCTGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	18210477	18225109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
50882	chr1	+	3423	9	NNC	ENSMUSG00000025969.16	novel	6708	16	NA	NA	64149	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.80124188831496	1	88	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATTTTTCCTACATTGT	8604	False	NA	NA	False	NA	NA	NA	62807009	62857846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_62807082_62808158_62808276_62810863_62811005_62822452_62822716_62824203_62824301_62825439_62825461_62851692_62851744_62854491_62856108_62856801
50883	chr6	+	3151	13	NNC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_8	66.4468772780181	1	142	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTTCTTTGTAAACT	9753	False	NA	NA	False	NA	NA	NA	86381272	86409161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86401326_86401403_86401943_86402051_86402442_86402509_86402638_86402728_86403548_86403673_86404654_86404801_86407222
50885	chr18	+	985	7	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-5	3556	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	296.0039414152	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTCCCATGGCCTTTTC	1041	False	NA	NA	False	NA	NA	NA	84953147	84982267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982236
50886	chr6	-	2427	12	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-8	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	109.223934046504	1	79	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGTTTCTGTGTGAAAA	NA	False	NA	NA	False	NA	NA	NA	112673617	112596850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112597866_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664935_112665000_112670429_112670512_112673504
50887	chr5	-	1594	8	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	4	-446	intron_retention	FALSE	canonical	0	0	junction_4	236.129417991101	2432	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGATACGGTATTGCC	NA	False	NA	NA	False	NA	NA	NA	124717120	124708721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124715216_124716499_124716602_124717063
50888	chr17	+	2149	9	FSM	ENSMUSG00000023990.19	ENSMUST00000086932.10	2342	9	183	10	183	-6	multi-exon	FALSE	canonical	3	431	junction_4	27.2370955683604	393	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTAGTATGTTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	48048137	48103334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_48048242_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
50890	chrX	+	3605	11	ISM	ENSMUSG00000036959.16	ENSMUST00000037596.13	7360	14	26073	1340	575	0	3prime_fragment	FALSE	canonical	3	9	junction_8	6.847627326308	21	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGTTGTATTGAGGGAC	NA	False	NA	NA	False	NA	NA	NA	47458719	47495586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_47459910_47463899_47464066_47465873_47465955_47467820_47468208_47472798_47473023_47477952_47478175_47480747_47480915_47482030_47482177_47489437_47489516_47490635_47490787_47494793
50891	chr13	+	1457	12	NNC	ENSMUSG00000021716.15	novel	1443	5	NA	NA	-161159	-26490	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	34	19	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGACTATAAAGCCAGGTA	NA	False	NA	NA	False	NA	NA	NA	104767832	104944287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_104768252_104794539_104794641_104797814_104797927_104856931_104857028_104929006_104929161_104932919_104932952_104933771_104933852_104938639_104938710_104940758_104940865_104941427_104941520_104943139_104943285_104944237
50892	chr16	+	2670	14	NIC	ENSMUSG00000035506.17	novel	2656	14	NA	NA	42	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_13	15.4644084592358	89	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	NA	False	NA	NA	NA	33337739	33483778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478684_33483294
50893	chr19	-	1947	7	NNC	ENSMUSG00000024654.9	novel	4195	7	NA	NA	32	-2176	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	152.800159976647	11	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAGAGTGTGGTTAGG	NA	False	NA	NA	False	NA	NA	NA	9112968	9089407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_9090573_9091587_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
50894	chrX	+	2726	1	NIC	ENSMUSG00000060090.17	novel	4417	5	NA	NA	32661	-848	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	171	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACTTCTCTTGCATTAA	NA	False	NA	NA	False	NA	NA	NA	20263518	20266244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20263500_20266200
50895	chr10	-	1429	7	NNC	ENSMUSG00000003923.15	novel	4167	7	NA	NA	199	510	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	151.585784293911	3	5	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTTCTGAAATTATGTA	NA	False	NA	NA	False	NA	NA	NA	71073911	71063765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072812_71072862_71073669
50896	chr1	+	1606	3	NIC	ENSMUSG00000026578.7	novel	1909	6	NA	NA	45	-4931	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	28	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTAATCTTAATATTCA	NA	False	NA	NA	False	NA	NA	NA	164103198	164110485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_164103331_164107435_164108384_164109959
50898	chr17	-	1842	5	ISM	ENSMUSG00000073437.11	ENSMUST00000181014.8	1903	7	801	4168	-4	664	internal_fragment	FALSE	canonical	0	0	junction_4	1.11803398874989	13	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAGCAGGTAGGTCAGG	-9	True	NA	NA	False	NA	NA	NA	24632602	24627790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24629146_24629231_24629328_24630898_24631058_24631440_24631549_24632478
50899	chr17	-	643	1	ISM	ENSMUSG00000073437.11	ENSMUST00000181014.8	1903	7	9132	6	8327	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGTATTTTATATGTAT	8349	False	NA	NA	False	NA	NA	NA	24624271	24623628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24623600_24624300
50900	chr11	+	1949	16	NNC	ENSMUSG00000025142.19	novel	870	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	27	junction_13	323.413295954263	31	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGCTGAGTTTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	120564211	120600269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599619_120599755_120599826_120599896_120600073_120600169
50901	chr4	-	644	1	ISM	ENSMUSG00000028467.16	ENSMUST00000128403.8	3543	13	10516	2	2069	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTAGTGTGGTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	43567573	43566929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_43566900_43567600
50903	chr9	-	3267	12	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	47431	-1311	-3765	-1	3prime_fragment	FALSE	canonical	3	64	junction_3	8.12505562600157	76	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGTCCTGTGAGTGTGC	NA	False	NA	NA	False	NA	NA	NA	45687594	45678244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162
50904	chr16	+	3053	11	NIC	ENSMUSG00000022906.16	novel	742	4	NA	NA	42	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	11.6794691660195	74	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTAACTGGCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	35759472	35792967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_35759577_35761402_35761506_35763738_35763773_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
50905	chr5	+	1645	5	Antisense	novelGene_ENSMUSG00000023348.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGGCTTCAGGGAGCC	385	False	NA	NA	False	NA	NA	NA	137308160	137311295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_137308439_137308548_137308673_137308917_137309093_137310134_137310304_137310396
50908	chr17	-	548	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2268.66078557373	22	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	NA	NA	NA	27854213	27849395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849481_27850173_27850230_27851252_27851325_27853068_27853218_27853299_27853450_27854177
50909	chr5	+	1061	7	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	1	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1522.38118492782	2	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATAACAATATATTCTCG	757	False	NA	NA	False	NA	NA	NA	77099624	77115342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109303_77114616_77114743_77115085
50910	chr11	+	2002	4	NIC	ENSMUSG00000023723.18	novel	1404	5	NA	NA	-3	0	intron_retention	FALSE	canonical	3	277	junction_2	16.0485374896143	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	88095246	88102333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88096186_88100678_88100757_88100929_88101057_88101475
50911	chr10	+	882	4	NNC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	13884	1274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	88	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGCAATCACGTGGTGG	NA	False	NA	21	True	NA	NA	NA	128556010	128557381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128556376_128556585_128556646_128556819_128556942_128557046
50912	chr13	-	1452	15	NIC	ENSMUSG00000021639.18	novel	1656	16	NA	NA	-11	103	combination_of_known_splicesites	FALSE	canonical	3	18	junction_5	81.9629084851614	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTAACTTTGTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	100629098	100605212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
50913	chr11	-	2392	9	NNC	ENSMUSG00000020832.15	novel	2131	9	NA	NA	11	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	68.996263485786	16	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTTATCTTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	77971198	77964204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77965001_77965105_77965255_77965346_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77969216_77970902
50914	chr11	+	1954	16	NNC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	-4	0	intron_retention	FALSE	canonical	1	2	junction_7	27.8107892732299	412	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8675	False	NA	NA	False	NA	NA	NA	83363932	83397569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379773_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
50915	chr8	-	2585	10	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	2049	1	intron_retention	FALSE	canonical	3	191	junction_8	17.0061717192086	1	118	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAGTTAGCGATATTG	NA	False	NA	NA	False	NA	NA	NA	106576552	106571307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571811_106571891_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464
50916	chr14	-	1443	9	NNC	ENSMUSG00000067995.5	novel	1467	8	NA	NA	-11	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	180.262612249462	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAACTGTTATCACTGGC	NA	False	NA	NA	False	NA	NA	NA	76248316	76134370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76134886_76134926_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
50917	chr11	-	2707	20	NIC	ENSMUSG00000020776.19	novel	5252	30	NA	NA	4	5576	combination_of_known_junctions	FALSE	canonical	2	6	junction_19	10.4167987064577	21	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCTCATCGAGGATGCAC	NA	False	NA	NA	False	NA	NA	NA	116058970	116039968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116040046_116040192_116040349_116041614_116041674_116041844_116041940_116042247_116042344_116043302_116043774_116044778_116044879_116045532_116045691_116045816_116045953_116046209_116046327_116046783_116046862_116048514_116048654_116049714_116049766_116050887_116050937_116052250_116052336_116054143_116054186_116055488_116055517_116056657_116056739_116057958_116058055_116058377
50918	chr11	-	1159	1	ISM	ENSMUSG00000020776.19	ENSMUST00000126861.8	3391	4	3687	9	3687	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	25	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCGACTTCTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	116034278	116033119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116033100_116034300
50919	chrX	+	4072	10	Antisense	novelGene_ENSMUSG00000034551.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTCTCATCATGATCGTG	NA	False	NA	NA	False	NA	NA	NA	110485111	110606797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_110487095_110492490_110492615_110498891_110498978_110502658_110502738_110510314_110510523_110531997_110532145_110559533_110559590_110569332_110570441_110581039_110581187_110606663
50920	chr4	+	2182	6	NIC	ENSMUSG00000029070.10	novel	2203	10	NA	NA	-903	0	intron_retention	FALSE	canonical	3	25	junction_1	3.54400902933387	6	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	NA	False	NA	NA	NA	155925857	155928545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155926004_155926118_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
50921	chr6	-	2280	16	FSM	ENSMUSG00000004266.16	ENSMUST00000171549.9	2226	16	-68	14	-68	-1	multi-exon	FALSE	canonical	3	18	junction_15	37.1732281203676	44	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATTGCCTCCAAGTCT	8852	False	NA	NA	False	NA	NA	NA	124715745	124697683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
50922	chr10	+	3345	6	ISM	ENSMUSG00000019843.15	ENSMUST00000099967.10	3528	14	158606	5	-4866	-5	3prime_fragment	FALSE	canonical	3	82	junction_1	20.8269056751117	82	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTGAAAAAAAAATTTTTG	NA	False	NA	NA	False	NA	NA	NA	39404399	39441363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
50923	chr10	+	1063	12	NNC	ENSMUSG00000078427.4	novel	918	11	NA	NA	-9	3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_10	1666.00684569943	10604	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTAGGTGTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	128657791	128713501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128709424_128709584_128713201
50924	chr2	-	2021	15	Antisense	novelGene_ENSMUSG00000027642.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACGGGAGAAAGTCAAG	NA	False	NA	NA	False	NA	NA	NA	157167975	157131445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_157131542_157132454_157132628_157136069_157136147_157137171_157137339_157139325_157139478_157141459_157141578_157144323_157144424_157152114_157152210_157154393_157154504_157156693_157156892_157158041_157158126_157159862_157159960_157162036_157162114_157163654_157163783_157167626
50926	chr19	+	992	3	NNC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	80281	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	295	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	45514227	45517732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_45514290_45515286_45515896_45517411
50927	chr7	-	1223	10	NNC	ENSMUSG00000001794.14	novel	1600	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_9	479.120258622219	175	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	29892528	29886366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892468
50928	chr2	+	1566	12	NNC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	570.823343300008	2	77	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	NA	False	NA	NA	NA	90884421	90889777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889477_90889604
50929	chr1	-	1979	12	NNC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	30	0	intron_retention	TRUE	non_canonical	0	0	junction_7	46.638578717553	1	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5286	False	NA	NA	False	NA	NA	NA	171108663	171104564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105324_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107000_171107576_171107713_171107846_171107961_171108097_171108247_171108343_171108446
50931	chr14	+	3512	16	ISM	ENSMUSG00000021998.17	ENSMUST00000145303.8	3841	17	40477	24	601	2	3prime_fragment	TRUE	canonical	2	7	junction_1	5.24679796532027	25	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTCCCCCAATTCTG	NA	False	NA	NA	False	NA	NA	NA	75414248	75468258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_75414374_75435516_75435604_75436719_75436884_75437819_75437950_75440075_75440209_75442004_75442087_75443558_75443725_75445859_75446003_75447878_75447975_75449770_75449967_75451924_75452004_75452548_75452664_75453767_75453902_75461510_75461635_75464406_75464532_75466645
50933	chr15	+	3753	3	FSM	ENSMUSG00000023051.12	ENSMUST00000153171.2	707	3	-1849	-1197	389	35	multi-exon	FALSE	canonical	3	365	junction_1	21	1	203	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGGAATAAACATGGTG	NA	False	NA	NA	False	NA	NA	NA	102427625	102432072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102429649_102430158_102430232_102430415
50934	chr10	+	1374	7	ISM	ENSMUSG00000020153.15	ENSMUST00000020361.7	758	8	8	-1	0	0	intron_retention	FALSE	canonical	3	1255	junction_1	370.244701365042	88	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9700	False	NA	NA	False	NA	NA	NA	80085293	80092627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757
50936	chr17	-	1746	13	FSM	ENSMUSG00000024055.16	ENSMUST00000075253.13	1752	13	6	0	-4	0	multi-exon	FALSE	canonical	2	129	junction_12	13.5285192587117	149	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGCATCAGACCAAAAT	NA	False	NA	NA	False	NA	NA	NA	33166370	33143661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151515_33151602_33151657_33160029_33160175_33165778_33165978_33166286
50937	chr1	+	2460	13	NNC	ENSMUSG00000056211.14	novel	2438	12	NA	NA	6	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	112.213431311348	3	119	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAACAAAAGGAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	128031073	128110834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095749_128096722_128096795_128102685_128102736_128102841_128102970_128104560_128104710_128106650_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722
50938	chr2	+	2222	4	NNC	ENSMUSG00000078864.11	novel	1074	3	NA	NA	-108957	40061	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	45.0357882380471	70	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGTGAGCTATCAAAAA	NA	False	NA	NA	False	NA	NA	NA	177292123	177452326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177292231_177409836_177409964_177410168_177410230_177450399
50939	chr5	+	1396	5	FSM	ENSMUSG00000025532.14	ENSMUST00000202163.4	931	5	2	-467	2	13	multi-exon	FALSE	canonical	3	60	junction_3	138.212472302611	45	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGGTATGTTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	130058144	130089643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130077766_130077825_130088545
50940	chr11	+	3527	1	FSM	ENSMUSG00000049323.9	ENSMUST00000102667.5	3544	1	18	-1	17	1	mono-exon	FALSE	NA	NA	NA	NA	NA	70	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTTTTTCAATGGTCATT	NA	False	NA	NA	False	NA	NA	NA	60668367	60671894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60668400_60671900
50941	chr7	-	1417	3	NIC	ENSMUSG00000061787.16	novel	494	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	8882	junction_2	2021	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	80994975	80992480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80992598_80993482_80994757_80994949
50943	chr8	+	1659	3	NNC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-113	2220	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	105.5	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTTGCTGATCATATT	NA	False	NA	NA	False	NA	NA	NA	14938890	14947279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_14939119_14944548_14945231_14946530
50944	chr14	+	1357	6	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	9	0	intron_retention	FALSE	canonical	3	3225	junction_2	509.645916298757	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	3068	False	NA	NA	False	NA	NA	NA	101903240	101933561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
50945	SIRV3	-	481	3	FSM	SIRV3B	SIRV308	479	3	0	-2	0	2	multi-exon	FALSE	canonical	3	5391	junction_1	17	8426	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTGTATGGCGGACA	NA	False	NA	NA	False	NA	NA	NA	1982	998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_-_1168_1532_1765_1902
50947	chr11	-	4254	25	FSM	ENSMUSG00000001507.17	ENSMUST00000107739.8	4636	25	381	1	381	-1	multi-exon	FALSE	canonical	3	46	junction_7	7.26566793595438	39	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTGTCTGCTCCTACC	NA	False	NA	NA	False	NA	NA	NA	94959643	94935300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94936590_94937274_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557_94944741_94944900_94945004_94946521_94946600_94946682_94946763_94947266_94947339_94947529_94947678_94947909_94948008_94948096_94948247_94948792_94948930_94949037_94949106_94950149_94950237_94950381_94950519_94950604_94950694_94952703_94952901_94953378_94953590_94953960_94954048_94956588_94956839_94959050_94959131_94959537
50950	chr11	-	2518	3	NIC	ENSMUSG00000018733.11	novel	2729	4	NA	NA	12	0	intron_retention	FALSE	canonical	3	9	junction_2	27	35	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTGACTTCTTGAAGTT	2442	False	NA	NA	False	NA	NA	NA	83189752	83185901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_83187267_83188313_83189380_83189665
50951	chr2	-	3825	5	NIC	ENSMUSG00000075040.10	novel	3740	4	NA	NA	0	-6	intron_retention	FALSE	canonical	2	7	junction_4	6.87386354243376	1	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATCTTAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	91480136	91474038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_91476819_91477940_91478192_91478360_91478423_91479280_91479372_91479495
50952	chr3	+	1627	14	NNC	ENSMUSG00000040213.14	novel	1888	14	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	28.7472149409974	1	27	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACTTCTCCGTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	142406833	142450094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_142406937_142412449_142412553_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142437007_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
50953	chr9	+	1491	11	NNC	ENSMUSG00000032216.16	novel	3329	10	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1140.87747370171	319	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569729	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625654_72656586
50954	chr7	-	1919	7	NIC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	58	junction_3	312.41341022576	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGTTTTGTGCTTGGAT	9184	False	NA	NA	False	NA	NA	NA	126461020	126450755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126452164_126456397_126456515_126456847_126456895_126457045_126457125_126460411_126460465_126460647_126460719_126460876
50955	chr9	-	2051	7	NNC	ENSMUSG00000032311.18	novel	2095	9	NA	NA	18037	11243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	89	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCCCTGAGCAGGCGCG	NA	False	NA	NA	False	NA	NA	NA	55131708	55116262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_55116472_55116635_55116776_55121191_55121279_55122184_55122296_55125614_55125766_55128305_55128478_55130527
50957	chr7	-	2199	13	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	1522	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	442.774397031566	1	129	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	5891	False	NA	NA	False	NA	NA	NA	143093985	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068426_143074130_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081038_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093920
50958	chr1	-	1033	11	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	430.293028063435	37	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	NA	False	NA	NA	NA	78465495	78401721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401850_78443614_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
50959	chr4	+	1217	9	NIC	ENSMUSG00000028601.19	novel	1307	10	NA	NA	-9	0	intron_retention	FALSE	canonical	2	14	junction_8	251.742427890096	26	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	NA	False	NA	NA	NA	108022675	108036505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108036103
50960	chr5	+	2415	2	NIC	ENSMUSG00000029462.19	novel	2716	4	NA	NA	2419	-218	intron_retention	FALSE	canonical	3	2105	junction_1	0	1	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACACAGTTGTATCACTT	6356	False	NA	NA	False	NA	NA	NA	122498108	122501056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122500335_122500867
50961	chr9	-	3284	6	FSM	ENSMUSG00000050721.10	ENSMUST00000068944.9	3273	6	-11	0	-11	0	multi-exon	FALSE	canonical	3	13	junction_5	5.23832034148352	34	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCTGGCCCAAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	65487333	65461665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_65464362_65465900_65466000_65466701_65466807_65471165_65471286_65480261_65480412_65487219
50964	chr11	-	1023	2	Genic_Genomic	ENSMUSG00000101841.2	novel	820	1	NA	NA	-27	322	multi-exon	FALSE	canonical	0	0	junction_1	0	8	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAACCATCTCCT	NA	False	NA	NA	False	NA	NA	NA	9100624	9099455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_9099844_9099989
50965	chr3	-	3277	1	NIC	ENSMUSG00000044080.10	novel	677	3	NA	NA	-35	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	392	77	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAATGTCTGTACCCT	NA	False	NA	NA	False	NA	NA	NA	90421620	90418343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_90418300_90421600
50966	chr2	+	1310	1	Intergenic	novelGene_2700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTTTCCCCCAACTCCCC	NA	False	NA	NA	False	NA	NA	NA	126003661	126004971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_126003700_126005000
50967	chr3	-	2892	2	FSM	ENSMUSG00000045092.9	ENSMUST00000055676.4	3046	2	149	5	149	-5	multi-exon	FALSE	canonical	3	24	junction_1	0	43	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATTCTTTTGTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	115508572	115504086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_115506764_115508357
50969	chr13	-	1790	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	27	88	27	-88	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	1	108	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCTTTCTATCCCTGAA	NA	False	NA	NA	False	NA	NA	NA	97334838	97312926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
50971	chr10	+	1227	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	-13	2653	-13	-2	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	26	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGCCTTTGTACAGT	NA	False	NA	NA	False	NA	NA	NA	95350993	95378866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
50972	chr6	+	1451	7	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	40.4533338826632	37	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7119	False	NA	NA	False	NA	NA	NA	125016810	125026228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
50973	chr17	+	2297	10	FSM	ENSMUSG00000039656.18	ENSMUST00000116612.3	2283	10	-11	-3	-11	1	multi-exon	FALSE	canonical	3	20	junction_1	64.8690989609074	113	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCATTTTCTGGACTGA	NA	False	NA	NA	False	NA	NA	NA	34251363	34257370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
50974	chr7	-	1994	6	FSM	ENSMUSG00000059772.13	ENSMUST00000144897.2	3152	6	-58	1216	-58	-6	multi-exon	FALSE	canonical	3	82	junction_4	7.98498591107085	324	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATTAAAAACAAAAGTTC	4929	False	NA	NA	False	NA	NA	NA	126295014	126289855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126291924_126291977_126294596
50975	chr2	-	1719	6	Antisense	novelGene_ENSMUSG00000033852.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	557	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTATTTCCGCTCCAGGAT	NA	False	NA	NA	False	NA	NA	NA	119863067	119857969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119858057_119860537_119860687_119860763_119861022_119861294_119861352_119861785_119862479_119862592
50976	chr4	+	4904	30	NNC	ENSMUSG00000039577.18	novel	4583	29	NA	NA	-396	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	9.50398877397977	23	34	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTAGTGTCTCTTCTGATGT	NA	False	NA	NA	False	NA	NA	NA	152562202	152647637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152562377_152568816_152568998_152573198_152573352_152581105_152581279_152582633_152582699_152583388_152583545_152587330_152587462_152590817_152591000_152591813_152591945_152602549_152602733_152608698_152608826_152620366_152620429_152621639_152621757_152622231_152622381_152622476_152622669_152623279_152623468_152628755_152628917_152631402_152631584_152636260_152636387_152638978_152639185_152639929_152640157_152640675_152640863_152641448_152641533_152643784_152643942_152644134_152644221_152644720_152644807_152645634_152645807_152646030_152646211_152646462_152646607_152647094
50977	chr5	+	2655	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	121	1078	7	-15	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	1	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGTAAATTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	52991474	53024061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
50978	chr6	+	4509	1	Antisense	novelGene_ENSMUSG00000047735.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGGGTATGGCGTGCAA	NA	False	NA	NA	False	NA	NA	NA	3372260	3376769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_3372300_3376800
50979	chr7	+	1452	7	NNC	ENSMUSG00000109947.2	novel	459	2	NA	NA	-8486	-6099	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	473	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGCGCAGGAAAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	44732346	44741645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44732790_44732991_44733190_44734327_44734388_44736087_44736261_44737920_44738124_44740863_44741112_44741518
50980	chr18	-	2066	4	FSM	ENSMUSG00000042834.16	ENSMUST00000051087.16	659	4	259	-1666	-45	0	multi-exon	FALSE	canonical	3	37	junction_1	5.90668171555645	127	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGCTTTGGCTCATT	NA	False	NA	NA	False	NA	NA	NA	33596533	33570074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430
50981	chr8	-	4089	13	NNC	ENSMUSG00000035671.7	novel	4625	14	NA	NA	1979	-315	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_12	9.55975359979999	43	41	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCTTTTTTTTTAAAAAA	8065	False	NA	NA	False	NA	NA	NA	84961705	84937621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84939435_84940651_84940734_84943873_84944038_84946454_84946610_84949848_84949985_84950299_84950555_84950771_84950910_84952444_84952796_84953300_84953469_84955420_84955572_84955651_84955801_84957369_84957727_84961535
50982	chr7	+	3322	4	NNC	ENSMUSG00000057093.15	novel	4612	6	NA	NA	247	1549	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	11.6714276000077	38	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTTTGAGATTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	27389011	27394666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27390721_27391906_27391960_27392906_27393111_27393310
50984	chr2	+	1182	10	NNC	ENSMUSG00000000827.19	novel	985	9	NA	NA	0	-363	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	438.110533434398	5	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	NA	False	NA	NA	NA	181139021	181157686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872_181157145_181157455
50986	chr10	+	2141	4	NNC	ENSMUSG00000061759.16	novel	5044	4	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	89.095454429505	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	4382694	4405140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4383070_4384827_4384934_4389491_4389720_4403708
50987	chr13	-	1916	16	ISM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	29550	1413	2825	1	3prime_fragment	FALSE	canonical	3	963	junction_15	167.052167500654	1	102	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCATGGTACTTGGT	5173	False	NA	NA	False	NA	NA	NA	6669263	6631216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210
50988	chr13	+	1878	8	NNC	ENSMUSG00000035958.4	novel	1957	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	302.324531669164	5	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGACTACGACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	25015661	25026130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_25015787_25015859_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
50989	chr16	-	2846	1	ISM	ENSMUSG00000035764.6	ENSMUST00000042732.6	4179	3	14201	0	14201	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGGTAGTCCATGTCA	561	False	NA	NA	False	NA	NA	NA	32051775	32048929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_32048900_32051800
50990	chr2	+	3170	2	ISM	ENSMUSG00000027338.17	ENSMUST00000110169.2	1918	3	-14	0	-14	0	intron_retention	FALSE	canonical	1	4	junction_1	0	10	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792942	131798050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_131792991_131794928
50991	chrX	+	1897	6	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	10	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	835.890519147095	1	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAATAAAATGTCTGTCA	NA	False	NA	NA	False	NA	NA	NA	139357371	139376861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366173_139369523_139369709_139372745_139372920_139374527_139374688_139375917
50992	chr18	-	1859	8	Antisense	novelGene_ENSMUSG00000089296.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGAGCACCGCCTCTTCC	NA	False	NA	NA	False	NA	NA	NA	38449921	38429750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_38429850_38432804_38432977_38433478_38433649_38434711_38434856_38440912_38441441_38442530_38442778_38446282_38446435_38449574
50993	chr10	+	1751	14	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	6	5799	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	419.584931560822	1	89	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGTAAGAACAGGTTTAA	NA	False	NA	NA	False	NA	NA	NA	21171922	21234302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175105_21180413_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220977_21221094_21223160_21223308_21225210_21225286_21227825_21227948_21228460_21228510_21230537_21230643_21234211
50996	chr11	+	2982	4	NNC	ENSMUSG00000000282.13	novel	4590	6	NA	NA	141	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	38.262252939418	114	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACGGAGCTCCCAAGCCT	NA	False	NA	NA	False	NA	NA	NA	74728434	74736535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74728550_74732986_74733180_74733376_74734231_74734715
50997	chr5	+	1976	14	Antisense	novelGene_ENSMUSG00000029657.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	2.93116290511656	1	82	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTGCAAAGATGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	149541131	149554321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_149541175_149541850_149542016_149542214_149542331_149542425_149542528_149543335_149543466_149544009_149544148_149546928_149547057_149548430_149548642_149550718_149550852_149551000_149551108_149552665_149552890_149553247_149553502_149553809_149553938_149554224
50998	chr13	-	3061	7	NNC	ENSMUSG00000021615.14	novel	424	4	NA	NA	0	-100709	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	56.1624627506863	5	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTAACTTTTATCTATT	NA	False	NA	NA	False	NA	NA	NA	90237655	90097748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_90100033_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
50999	chr15	-	1227	5	NIC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	-36	-5	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	372.661374440658	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTCTCTCCCAGGTAA	NA	False	NA	NA	False	NA	NA	NA	57897757	57885670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_57885960_57888669_57888803_57892009_57892441_57895379_57895476_57897479
51000	chr1	+	1831	7	FSM	ENSMUSG00000057715.14	ENSMUST00000135014.8	6451	7	-72	4692	-72	298	multi-exon	FALSE	canonical	3	15	junction_4	4.57043640026736	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGATACTCACTTTGGG	NA	False	NA	NA	False	NA	NA	NA	11484420	11667153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374
51001	chr17	-	1459	4	Antisense	novelGene_ENSMUSG00000024312.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGGGGTTTTGATGTG	NA	False	NA	NA	False	NA	NA	NA	34168669	34166881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_34167717_34167813_34167903_34168043_34168160_34168250
51002	chr6	-	2218	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112585.8	2127	8	-87	-4	-14	2	multi-exon	FALSE	canonical	3	36	junction_1	6.10453160549186	116	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTTGTGTTTGTGGTG	8637	False	NA	NA	False	NA	NA	NA	122579417	122554755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568164_122573590_122573737_122577016_122577085_122579215
51003	chr13	-	4009	1	Antisense	novelGene_ENSMUSG00000093930.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCCAGGGCTATACAGAG	NA	False	NA	NA	False	NA	NA	NA	120157806	120153797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_120153800_120157800
51004	chr10	-	2672	13	FSM	ENSMUSG00000020038.11	ENSMUST00000020227.11	3026	13	354	0	354	0	multi-exon	FALSE	canonical	3	194	junction_12	27.3651999200932	118	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGTGTACTTGTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	85020574	84967563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_84968172_84968914_84969023_84969105_84969178_84978879_84979033_84979502_84979706_84980017_84980170_84982207_84982520_84982599_84982741_84983770_84983860_84984477_84984663_84987076_84987220_84992949_84993059_85020177
51005	chr10	+	1653	6	NNC	ENSMUSG00000035873.9	novel	1745	7	NA	NA	-33255	566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	294.929550910044	3	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATAAAGTTGCCTTCT	3627	False	NA	NA	False	NA	NA	NA	108134726	108250667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_108134821_108218590_108218723_108227558_108227594_108245323_108245472_108247824_108247930_108249528
51007	chr9	+	1506	10	NIC	ENSMUSG00000010057.9	novel	1441	11	NA	NA	5	-12	intron_retention	FALSE	canonical	3	98	junction_4	10.6770782520313	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTGTTTCATCCTGTG	NA	False	NA	NA	False	NA	NA	NA	107419448	107422882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422231_107422443_107422587_107422689
51008	chr7	-	2504	10	FSM	ENSMUSG00000019082.19	ENSMUST00000106007.10	2546	10	9	33	9	-26	multi-exon	FALSE	canonical	2	3	junction_9	39.7436228287703	200	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCATGTAAAAAATAAATAAA	3514	False	NA	NA	False	NA	NA	NA	141014498	141009694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141014443
51010	chr16	+	3242	1	ISM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	28421	17	28371	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	2052	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTGTTTACCAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	19944712	19947954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_19944700_19948000
51013	chr10	-	2180	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	1382	4	1382	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATATTTTGACTCATCTT	NA	False	NA	NA	False	NA	NA	NA	112763518	112761338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_112761300_112763500
51014	chr7	+	1502	6	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-14	-1	combination_of_known_junctions	TRUE	canonical	2	20	junction_5	121.921942241747	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTTGACTCAGCCTTT	NA	False	NA	NA	False	NA	NA	NA	132212381	132308145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132307320
51015	chr2	-	2076	7	NIC	ENSMUSG00000039033.12	novel	2127	13	NA	NA	5	311	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	30.799080072842	97	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAGGTATTTTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	139908700	139818140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_139819634_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
51016	chr5	-	3036	10	FSM	ENSMUSG00000029312.13	ENSMUST00000031254.9	3193	10	126	31	126	-1	multi-exon	FALSE	canonical	3	103	junction_9	11.7473401244707	40	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGCAGAAAAAAATGGAAACT	NA	False	NA	NA	False	NA	NA	NA	104058999	104009946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_104011058_104012067_104012270_104015358_104015519_104015710_104015880_104018394_104018507_104019896_104020041_104022068_104022256_104023606_104024156_104033772_104034157_104058981
51017	chr11	+	2435	18	FSM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	26	31	0	-26	multi-exon	FALSE	canonical	3	36	junction_12	7.88805763716247	96	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATACAGAACTTTTGTAC	6090	False	NA	NA	False	NA	NA	NA	120604776	120611923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
51018	chr3	-	1189	9	NIC	ENSMUSG00000005625.16	novel	1276	10	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	703.220226884864	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTTTGCTTCAAATAGT	NA	False	NA	NA	False	NA	NA	NA	94949848	94940014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94940296_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
51019	chr11	+	1763	13	Fusion	ENSMUSG00000006782.17_ENSMUSG00000017837.13	novel	1727	4	NA	NA	6966	-5265	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACCAGAGAGCCGGGTGG	NA	False	NA	NA	False	NA	NA	NA	100473682	100510439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_100473963_100474419_100474486_100475038_100475192_100475377_100475525_100475807_100475878_100480499_100480600_100480716_100480821_100481716_100481878_100482237_100482531_100489453_100489528_100489995_100490136_100492553_100492642_100510352
51020	chr4	-	1932	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	71	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	90.5	2	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACACCTGACCTCATTCA	9871	False	NA	NA	False	NA	NA	NA	141811544	141758306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141759406_141764715_141765344_141811339
51021	chr7	-	3064	18	NNC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-2084	-52	intron_retention	FALSE	non_canonical	0	0	junction_15	49.2842893473223	1	139	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCGTACAGCGGCAAAACT	NA	False	NA	NA	False	NA	NA	NA	140690671	140681189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140681841_140681931_140682045_140682170_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688702_140688757_140690288_140690426_140690543
51022	chr7	-	4747	7	Antisense	novelGene_ENSMUSG00000030607.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	118	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATGTCCTAACAAGGAC	NA	False	NA	NA	False	NA	NA	NA	78750864	78739185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_78739345_78740686_78741090_78742058_78742234_78742424_78742554_78743728_78744027_78746412_78746627_78747495
51024	chr4	-	1257	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4639.71639703312	6	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	NA	NA	NA	119151697	119135177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136397_119138766_119138806_119139400_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151565
51025	chr2	+	2300	11	NIC	ENSMUSG00000039263.17	novel	2467	12	NA	NA	65	-14	intron_retention	FALSE	canonical	3	237	junction_8	19.4907670449369	156	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCACAACATAACCTTGT	NA	False	NA	NA	False	NA	NA	NA	173952206	173964481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962918_173963271_173963383_173963883
51029	chr1	-	2962	1	Antisense	novelGene_ENSMUSG00000026096.15_AS_novelGene_ENSMUSG00000100679.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTAAACCATGCTCAACA	NA	False	NA	NA	False	NA	NA	NA	53356504	53353542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_53353500_53356500
51031	chr11	-	986	5	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9032.9801387748	76	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCAGTTGTTTATTT	9930	False	NA	NA	False	NA	NA	NA	69812223	69807542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807883_69808434_69808555_69808742_69808848_69809976_69810163_69811988
51033	chr18	+	2871	3	FSM	ENSMUSG00000053477.19	ENSMUST00000146908.2	3693	3	1358	-536	-1323	536	multi-exon	FALSE	canonical	3	123	junction_1	14	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTATGTAAAAGTTATAT	NA	False	NA	NA	False	NA	NA	NA	69814127	69818135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_69814870_69815753_69815895_69816147
51034	chr1	+	1450	6	NNC	ENSMUSG00000052423.16	novel	869	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	93.4515917467434	2	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097908	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171097985_171098772_171098944_171099397_171099572_171100090_171100327_171101522_171101661_171103812
51035	chr17	-	1670	5	NIC	ENSMUSG00000019579.14	novel	1710	6	NA	NA	4	-528	intron_retention	FALSE	canonical	3	1137	junction_1	48.7570507721704	60	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTTATGCTCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	56490916	56483271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56484004_56484698_56485346_56486363_56486426_56489664_56489716_56490738
51037	chr5	-	2146	7	NNC	ENSMUSG00000001847.15	novel	2325	7	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	452.52096329587	460	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTGGTTATGCTTGTGT	3468	False	NA	NA	False	NA	NA	NA	143513746	143491236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143492861_143493081_143493242_143493850_143493914_143500423_143500542_143502912_143502985_143513517_143513581_143513700
51038	chr19	+	1303	2	NIC	ENSMUSG00000096740.9	novel	387	3	NA	NA	-155	77	intron_retention	FALSE	canonical	3	3190	junction_1	0	22	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTCACCGTGTGGGATGAA	NA	False	NA	NA	False	NA	NA	NA	8866486	8868099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8867465_8867774
51039	chrX	+	2402	9	FSM	ENSMUSG00000031154.16	ENSMUST00000033494.16	4259	9	729	1128	-45	208	multi-exon	FALSE	canonical	3	377	junction_8	48.0999935031181	217	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACCAAGATTGTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	7708798	7741737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740471
51040	chr9	-	819	7	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGGAAAAGGAAAGACTTG	NA	False	NA	NA	False	NA	NA	NA	64085799	64080666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080702_64082095_64082276_64082473_64082581_64082863_64083007_64083375_64083497_64084220_64084376_64085721
51041	chr17	+	2000	5	NIC	ENSMUSG00000041199.4	novel	1761	6	NA	NA	82	3	intron_retention	FALSE	canonical	3	51	junction_1	11.7553179455087	104	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGTGACCATGAGCATA	NA	False	NA	NA	False	NA	NA	NA	25946787	25950435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
51042	chr4	+	868	6	NNC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	4	243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9399.24659533944	6	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGATTCATTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	116542799	116556712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550973_116551045_116556367
51043	chr5	-	2751	8	FSM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	54	0	54	0	multi-exon	TRUE	canonical	2	3	junction_7	5.20204041600946	40	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTGGCAAGAATATC	NA	False	NA	NA	False	NA	NA	NA	144698405	144672724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097_144689258_144692020_144692327_144698266
51044	SIRV6002	+	3788	1	FSM	SIRV6002A	SIRV6002	6000	1	0	2212	0	-2212	mono-exon	FALSE	NA	NA	NA	NA	NA	7	87	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTAACACTCACCCGG	NA	False	NA	NA	False	NA	NA	NA	0	3788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6002_+_0_3800
51045	chr11	+	1690	4	Antisense	novelGene_ENSMUSG00000048076.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	67	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCCAAAGACCTGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	59102236	59104338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_59103521_59103645_59103771_59103967_59104068_59104157
51046	chr17	+	2218	4	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	6	-264	intron_retention	FALSE	non_canonical	0	0	junction_2	1534.8931196956	2	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTCTGTGTGAATTGCT	NA	False	NA	NA	False	NA	NA	NA	13226888	13234239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13229435_13229506_13232361
51048	chr5	-	2098	4	NNC	ENSMUSG00000046798.15	novel	3597	4	NA	NA	1202	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	30.2691628926573	62	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAAGTTTGTCTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	5563247	5555114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5555677_5557128_5558455_5561070_5561195_5563161
51049	chr6	+	1564	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	-19	4	-19	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGCAGTGAAGAGTGAG	2289	False	NA	NA	False	NA	NA	NA	113303913	113311145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
51050	chr16	+	1602	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	-22	658	multi-exon	FALSE	canonical	1	44	junction_1	0	2	83	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATCTACC	NA	False	NA	NA	False	NA	NA	NA	24348121	24349770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_24348184_24348230
51051	chr7	-	854	4	NIC	ENSMUSG00000003429.12	novel	661	5	NA	NA	-21	4	intron_retention	FALSE	canonical	3	18027	junction_2	5813.10830986506	6	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGAACAGGCTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	44773796	44771812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44772383_44772586_44772663_44772842_44772975_44773720
51052	chr2	-	1999	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	440.824480062328	1	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACATCCTTGGTGACTT	NA	False	NA	NA	False	NA	NA	NA	152185941	152179346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180608_152181634_152181904_152184943_152185248_152185776
51053	chr8	-	995	6	NNC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	338	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.353841795049	5	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAAATTTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	108144960	108139124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108139635_108139718_108139816_108142737_108142883_108143666_108143724_108144687_108144859_108144945
51054	chr17	-	3550	11	NNC	ENSMUSG00000062202.15	novel	7058	11	NA	NA	-1	-1175	intron_retention	FALSE	canonical	2	10	junction_10	30.6400065274144	1	96	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACACACGTGTCATGCT	NA	False	NA	NA	False	NA	NA	NA	30795172	30437689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749314_30795119
51055	chr1	+	2074	8	NNC	ENSMUSG00000026457.15	novel	3446	8	NA	NA	179	-1011	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_4	433.370322858746	1	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTTGGCATTCAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	134343480	134360075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353720_134353834_134355819_134356008_134358794_134358989_134359267
51056	chr19	+	1608	9	NIC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	-4	-3	intron_retention	FALSE	canonical	3	1028	junction_4	78.1040972036679	17	17	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGTACTGATCCTGGACCT	959	False	NA	NA	False	NA	NA	NA	8713186	8717978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8713270_8713350_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8717329_8717459_8717517_8717765
51057	chr5	+	3164	3	FSM	ENSMUSG00000053334.7	ENSMUST00000065698.7	3133	3	-26	-5	-26	5	multi-exon	FALSE	canonical	3	46	junction_2	4.5	41	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCGTTGTCTCATCCAG	689	False	NA	NA	False	NA	NA	NA	113873837	113878666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_113874111_113874881_113875234_113876127
51058	chr7	+	1435	14	NIC	ENSMUSG00000002963.18	novel	2184	16	NA	NA	1	3	intron_retention	FALSE	canonical	2	5	junction_2	64.8202795354452	10	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTGCACAGCCATCTT	9517	False	NA	NA	False	NA	NA	NA	44506764	44512068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44506979_44507586_44507634_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
51060	chr15	+	2544	7	FSM	ENSMUSG00000023034.8	ENSMUST00000023779.8	2477	7	-92	25	-92	-25	multi-exon	FALSE	canonical	3	74	junction_1	46.5895195653844	180	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAATAGACATGTAGT	NA	False	NA	NA	False	NA	NA	NA	101164634	101172651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101164853_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
51061	chr19	-	1768	10	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	4	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1491.67016345545	8	84	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	8691239	8684933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685290_8685330_8685409_8685544_8685642_8686368_8686510_8686595_8686761_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
51062	chr15	-	2718	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	-19	-4	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	259	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATACCCTCTGTCTGC	8410	False	NA	NA	False	NA	NA	NA	79339786	79302059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
51063	chr10	-	1480	5	NIC	ENSMUSG00000034024.9	novel	637	6	NA	NA	-11	222	intron_retention	FALSE	canonical	3	1940	junction_4	161.543144391831	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATGCTTTTTCAGGATT	NA	False	NA	NA	False	NA	NA	NA	116899679	116896328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
51064	chr10	-	3354	15	Antisense	novelGene_ENSMUSG00000034453.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGAGACGGCTGCAGAG	NA	False	NA	NA	False	NA	NA	NA	84563025	84509356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_84509391_84510418_84510583_84512745_84512899_84515607_84515679_84516224_84516329_84520040_84520173_84528664_84528869_84531416_84531576_84532810_84532926_84535257_84535405_84549491_84549596_84550107_84550275_84554272_84554386_84556205_84556379_84561511
51065	chr13	-	1442	5	NIC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	56.3427013906859	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	NA	NA	NA	91955794	91944651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_91945374_91948729_91948823_91948984_91949136_91953869_91954280_91955728
51066	chr11	+	1935	8	NNC	ENSMUSG00000037791.16	novel	4410	15	NA	NA	-97	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	46.7956914116447	6	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTTTTCTGCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	77914323	77921362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142_77920663_77920860
51067	chr7	+	2472	9	NNC	ENSMUSG00000003549.10	novel	1375	10	NA	NA	537	-17	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	124.296017635321	6	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTCCATGCCCAGGCT	1630	False	NA	NA	False	NA	NA	NA	19079621	19090430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_19079643_19082325_19082542_19084085_19084190_19084617_19085155_19085364_19086631_19088250_19088351_19089025_19089098_19089217_19089287_19090343
51068	chr3	+	3350	14	NNC	ENSMUSG00000036825.13	novel	3446	14	NA	NA	65	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.8542851003394	61	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGAAGCCTTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	146110510	146145891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_146110566_146123361_146123546_146124029_146124200_146124889_146125103_146128650_146128762_146132077_146132214_146133579_146133656_146133741_146133923_146136683_146136835_146138235_146138373_146138727_146138902_146142297_146142413_146142930_146143097_146144410
51070	chr17	+	2907	18	FSM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	341	4	19	-4	multi-exon	FALSE	canonical	3	51	junction_2	23.5177912481234	69	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTGTCCCCATCCTT	3575	False	NA	NA	False	NA	NA	NA	34148896	34156657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
51071	chr2	+	2673	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	252	88	252	-88	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	40	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGTCTAAACATTCTAG	NA	False	NA	NA	False	NA	NA	NA	163837131	163860420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
51072	chr5	-	879	5	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCGCCAGCTTCAACTA	NA	False	NA	NA	False	NA	NA	NA	75781611	75767777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75767957_75769927_75770210_75771464_75771599_75775974_75776151_75781503
51073	chr1	+	1289	6	NNC	ENSMUSG00000026547.16	novel	1586	5	NA	NA	42	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	448.58916616432	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTCTGGCTGTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	172327853	172334943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133_172334435_172334487
51074	chr7	+	1558	5	NIC	ENSMUSG00000042831.14	novel	1112	6	NA	NA	-11	-2	intron_retention	FALSE	canonical	3	431	junction_1	30.0124973969178	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTCGTTTTGGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	30008190	30013726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30008260_30008905_30009480_30011264_30011326_30011661_30012133_30013343
51075	chr10	-	383	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	13	148	13	-51	multi-exon	FALSE	canonical	3	12818	junction_1	2119	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACGGTTCCACCTTCGC	NA	False	NA	NA	False	NA	NA	NA	75696061	75695334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75695378_75695520_75695694_75695894
51076	chr11	-	1216	6	NNC	ENSMUSG00000020738.17	novel	1051	4	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2024.64185474864	3	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427047	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115414596_115417867_115418030_115418308_115418367_115421171_115421244_115425377_115425510_115426923
51078	chr19	-	1400	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	13	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1449.29827847824	1	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAAGTCCTAAGTCATCT	NA	False	NA	NA	False	NA	NA	NA	15902281	15882515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883008_15883269_15883516_15884293_15884432_15886664_15886727_15894542_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
51079	chr4	+	1243	8	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	300	-134	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2096.77240791943	3	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTTTTCTCATGCTTT	50	False	NA	NA	False	NA	NA	NA	46451201	46472523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468715_46468753_46468788_46469882_46470008_46471397_46471468_46472086
51080	chr10	+	1772	9	FSM	ENSMUSG00000001786.15	ENSMUST00000117597.2	1799	9	31	-4	31	4	multi-exon	FALSE	canonical	3	31	junction_1	75.1232320923428	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTGACTTTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	85858091	85884191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_85858195_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
51081	chr2	-	1410	3	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	3961	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	472	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTTGATATGTGAAACAT	3779	False	NA	NA	False	NA	NA	NA	152181929	152179358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180349_152180482_152180608_152181634
51082	chr3	-	1979	16	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	192.431274889389	1	65	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGGCTGTGCCTTCATC	NA	False	NA	NA	False	NA	NA	NA	95662183	95647290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648740_95649379_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95662069
51083	chr1	+	3052	8	Antisense	novelGene_ENSMUSG00000026098.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	45	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCCGCCCACAGCAGGA	4801	False	NA	NA	False	NA	NA	NA	53301952	53336174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_53304039_53304138_53304354_53304451_53304588_53306986_53307088_53314226_53314411_53321099_53321253_53329535_53329583_53336044
51084	chr14	+	4196	11	NNC	ENSMUSG00000022214.16	novel	4413	12	NA	NA	336	-10	intron_retention	FALSE	canonical	0	0	junction_7	42.1104500094691	2	181	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGGAAACTGGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	55798859	55807508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55800477_55800828_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802999_55803093_55803275_55804320_55804475_55804704_55804858_55806479_55806587_55806684
51085	chr17	-	2080	14	FSM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	22	0	4	0	multi-exon	TRUE	canonical	3	272	junction_6	38.0609912279546	128	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	32569559	32540397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
51088	chr16	-	1400	6	NIC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	255	junction_4	29.3011945148999	711	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	16943031	16931261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16939416_16942853
51091	chr8	-	3047	13	Antisense	novelGene_ENSMUSG00000031740.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCAGCACCGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	93580043	93553945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_93554405_93557247_93557474_93558310_93558461_93559390_93559519_93559694_93559869_93562594_93562770_93563532_93563706_93565876_93566032_93567013_93567159_93570446_93570582_93572705_93572867_93576751_93576863_93579188
51092	chr5	+	2308	1	NIC	ENSMUSG00000029535.5	novel	1088	2	NA	NA	16	-21	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACTCTTTGCTCCCAAA	2430	False	NA	NA	False	NA	NA	NA	115479299	115481607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115479300_115481600
51096	chr13	-	2528	6	NNC	ENSMUSG00000022228.15	novel	4366	6	NA	NA	23	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.24819974072532	4	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAGATTTTTAAATGGTG	NA	False	NA	NA	False	NA	NA	NA	21637877	21626406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_21628268_21631981_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
51097	chr12	-	2318	9	FSM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	49	3697	49	-271	multi-exon	FALSE	canonical	3	931	junction_7	74.7277349783867	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTCTCAGGAATCTGTT	-3	True	NA	NA	False	NA	NA	NA	91556734	91525732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_91526626_91529682_91529773_91534313_91534635_91534910_91535045_91536536_91536613_91539339_91539408_91542357_91542566_91553473_91553576_91556308
51098	chr3	-	1110	10	NNC	ENSMUSG00000059743.13	novel	1237	10	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	737.709083147296	9	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	NA	False	NA	NA	NA	89009191	89000894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002372_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
51100	chr4	-	2415	1	Intergenic	novelGene_1962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGGGTGGTTCTCAAATT	5916	False	NA	NA	False	NA	NA	NA	129233304	129230889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_129230900_129233300
51101	chr18	+	1861	11	NNC	ENSMUSG00000024563.17	novel	8089	11	NA	NA	-141	-157	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_8	78.8274064015809	19	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTATTCCCACTTCTCC	NA	False	NA	NA	False	NA	NA	NA	76374975	76438208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435226_76435288_76435453_76435599_76437677
51102	chr15	+	2355	10	FSM	ENSMUSG00000015363.14	ENSMUST00000081702.12	2439	10	76	8	-5	-2	multi-exon	FALSE	canonical	3	86	junction_1	6.70175948888899	94	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCTCCCGCTTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	88960291	88971272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
51104	chr12	+	2253	4	ISM	ENSMUSG00000079012.12	ENSMUST00000168797.2	1659	5	1205	41	1205	-40	3prime_fragment	FALSE	canonical	3	63	junction_1	13.1993265821489	4	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTGGCAAATACACAGAG	9074	False	NA	NA	False	NA	NA	NA	104354627	104360475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_104355972_104357714_104357989_104358900_104359052_104359991
51105	chr4	+	1619	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1009.60283720327	2	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2954	False	NA	NA	False	NA	NA	NA	128887101	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892926_128893053_128895943_128895997_128896187_128896262_128901503_128901579_128901826_128902023_128904355
51106	chr2	+	1645	1	NIC	ENSMUSG00000041921.17	novel	1898	6	NA	NA	-1679	-578	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACCGTGGGATCAGA	9444	False	NA	NA	False	NA	NA	NA	71344076	71345721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_71344100_71345700
51107	chr17	-	955	3	NNC	ENSMUSG00000024248.15	novel	1076	3	NA	NA	0	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	644	42	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTTAGTTTGTTTGTT	9947	False	NA	NA	False	NA	NA	NA	83821759	83809355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_83810115_83811588_83811658_83821632
51109	chr12	+	1611	5	Antisense	novelGene_ENSMUSG00000112008.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCTCAGGGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	76984358	77009155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_76985531_76986202_76986291_76986742_76986864_76999941_77000059_77009042
51112	chr12	+	4285	10	NNC	ENSMUSG00000021254.10	novel	4355	10	NA	NA	24	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	20.418461750262	1	216	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTAAATAAAGTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	86288672	86338533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86288719_86290808_86291467_86303631_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86328222_86328318_86335573
51113	chr11	-	2328	11	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	-31	0	intron_retention	FALSE	canonical	3	193	junction_2	37.0264770130781	53	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTTGCAGCTTCTTGT	8341	False	NA	NA	False	NA	NA	NA	82799199	82791597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
51114	chr4	-	2048	4	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9758	1201	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	5.43650214343336	157	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTGACTGTTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	101828488	101823448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101824980_101825125_101825438_101827043_101827123_101828362
51116	chr1	+	1983	11	NNC	ENSMUSG00000026027.14	novel	2534	13	NA	NA	3442	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	24.3493326397255	1	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCTTTTATATATTTTG	1923	False	NA	NA	False	NA	NA	NA	59016122	59034281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031809_59031915_59032101_59032297_59032719_59032763_59033451
51117	chr3	-	1902	7	FSM	ENSMUSG00000092607.10	ENSMUST00000172572.9	1054	7	-1036	188	-1036	0	multi-exon	FALSE	canonical	3	365	junction_2	27.675199487387	1178	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATCCTGGAGTCCGGTT	202	False	NA	NA	False	NA	NA	NA	95042358	95037034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
51118	chr18	-	1561	7	NIC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	0	-4	intron_retention	FALSE	canonical	2	3	junction_4	505.808511197667	13	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCATTTCTTGTTATCTG	NA	False	NA	NA	False	NA	NA	NA	77855486	77845272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77849681_77849817_77851772_77851909_77854563
51119	chr17	-	2098	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	219	3	99	1	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	3	101	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34250375	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
51121	chr19	-	2887	21	FSM	ENSMUSG00000006457.5	ENSMUST00000006626.5	2887	21	-9	9	-9	-2	multi-exon	FALSE	canonical	2	4	junction_20	6.25519783859791	40	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATCTGTTTTTGTTTTGTT	304	False	NA	NA	False	NA	NA	NA	4927946	4911252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4911532_4911612_4911772_4912197_4912264_4912351_4912499_4913162_4913343_4913437_4913573_4913998_4914182_4914452_4914594_4914680_4914790_4915326_4915478_4917568_4917717_4917840_4918072_4918745_4918839_4919385_4919472_4920939_4921022_4921109_4921189_4921624_4921713_4921798_4921886_4922266_4922387_4922569_4922685_4927738
51122	chr1	+	1722	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	-10	-2	-7	2	multi-exon	FALSE	canonical	3	512	junction_1	10.5	373	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTTTTGTTTGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	16735423	16748501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_16735730_16737891_16737998_16747191
51123	chr11	+	1478	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	75	73	75	-73	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTGCAGTTACTTGAAT	NA	False	NA	NA	False	NA	NA	NA	120653694	120655172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653700_120655200
51124	chr19	-	3512	17	FSM	ENSMUSG00000041362.18	ENSMUST00000047511.15	3974	17	458	4	427	-4	multi-exon	FALSE	canonical	1	1	junction_15	2.31081019341702	25	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACCGTGTGTTTCTCTGA	NA	False	NA	NA	False	NA	NA	NA	59064074	58961931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_58963641_58978620_58978814_58983449_58983571_58988324_58988379_58992271_58992382_58998196_58998280_59003958_59004059_59007236_59007391_59010607_59010755_59016586_59016682_59020604_59020687_59023475_59023574_59026653_59026823_59030293_59030389_59039265_59039327_59049062_59049116_59063886
51125	chr5	-	2743	24	NNC	ENSMUSG00000029616.10	novel	4034	3	NA	NA	12425	30597	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	120	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCTCAGTGCGCAAGCG	NA	False	NA	NA	False	NA	NA	NA	121577986	121536055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121536125_121545254_121545341_121546257_121546400_121547161_121547269_121551075_121551157_121552586_121552659_121552873_121552943_121555445_121555541_121555989_121556080_121558528_121558695_121559352_121559467_121561619_121561805_121562575_121562664_121564030_121564214_121564788_121564818_121568643_121568818_121569526_121569653_121572897_121573133_121573525_121573647_121574720_121574786_121575672_121575767_121576788_121576901_121577396_121577546_121577895
51127	chr2	-	2294	14	NNC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	-160	556	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	116.680619058631	1	96	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGAGAGTCACAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	91536239	91506071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510687_91510803_91511903_91512089_91515479_91515595_91516126_91516197_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91535925
51128	chr7	+	1986	6	NNC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	309.60813942789	9	75	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCCCTCTGTAGGGTGT	NA	False	NA	NA	False	NA	NA	NA	43896210	43901729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43896248_43897675_43897720_43898877_43899019_43899444_43899484_43899732_43899765_43900036
51129	chr2	+	1339	4	NNC	ENSMUSG00000026755.15	novel	1339	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	449.53704580997	1310	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	NA	False	NA	NA	NA	38898087	38905889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_38898359_38903128_38903200_38903734_38903912_38905069
51130	chrX	-	2003	6	NIC	ENSMUSG00000031388.15	novel	962	8	NA	NA	45	0	intron_retention	FALSE	canonical	3	198	junction_1	351.032192255924	4	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGGGGTATGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	72965389	72960480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72960802_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72964977_72965361
51131	chr5	+	1614	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	182	junction_2	844.746612604142	1077	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATGATAACAAATTCTTG	NA	False	NA	NA	False	NA	NA	NA	38377860	38391650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
51132	chr11	+	1829	11	NNC	ENSMUSG00000059552.14	novel	1867	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	912.407606281315	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	NA	False	NA	NA	NA	69471228	69482698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479186_69479394_69479468_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
51133	chr4	-	1624	7	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	1809	5	-104	0	3prime_fragment	FALSE	canonical	3	108	junction_2	13.2214052035158	358	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	NA	False	NA	NA	NA	129450356	129442141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080
51135	chr12	+	1162	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	277	0	-59	0	multi-exon	FALSE	canonical	3	743	junction_5	14.1745076340121	1305	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	5899	False	NA	NA	False	NA	NA	NA	113104132	113109126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
51138	chr1	+	1902	2	Antisense	novelGene_ENSMUSG00000038633.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGGATTACCCGAGTAGT	NA	False	NA	NA	False	NA	NA	NA	182100415	182105807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182100556_182104045
51139	chr19	-	2957	6	NNC	ENSMUSG00000074733.15	novel	676	6	NA	NA	-2	-44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	21.0428135001002	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACTGTAAGGCAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61129235	61103465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_61105727_61115444_61115506_61115875_61116003_61124801_61124861_61125284_61125641_61129142
51140	chr2	+	1178	8	NNC	ENSMUSG00000039041.16	novel	1535	10	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	825.695452083779	14	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCAGTATGGTCTGGGCC	NA	False	NA	NA	False	NA	NA	NA	179813370	179818073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815818_179817032_179817186_179817390_179817549_179817646_179817750_179817866
51142	chr5	+	1694	11	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	113.163421652051	471	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	135398823	135404997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402104_135402228_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
51143	chr5	+	2314	12	Antisense	novelGene_ENSMUSG00000106607.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	116	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGCGGCCCGAACCAGGAG	NA	False	NA	NA	False	NA	NA	NA	52307569	52347822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_52308117_52309148_52309320_52311376_52311570_52314796_52314920_52317571_52317764_52318234_52318343_52318927_52319075_52319866_52319960_52324046_52324210_52327261_52327402_52342009_52342245_52347620
51144	chr11	+	2064	15	NNC	ENSMUSG00000020430.13	novel	2911	15	NA	NA	-9	-817	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	300.111994401546	1	111	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTATTAAATGGTTGG	NA	False	NA	NA	False	NA	NA	NA	3913999	3929187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928831
51145	chr3	-	1534	6	NIC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	-35	-23	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	308.591380307357	1	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCCTTAAGTAATTAT	NA	False	NA	NA	False	NA	NA	NA	131065708	131027090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_131027937_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
51146	chr9	+	1314	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1434	-149	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6356.36770171259	2	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64082108	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64082992_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
51149	chr12	+	534	2	ISM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	16603	398	5957	-398	3prime_fragment	FALSE	canonical	3	3081	junction_1	0	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGATAAATGTATGAAATT	NA	False	NA	NA	False	NA	NA	NA	17333198	17334373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_17333298_17333938
51150	chrX	-	1303	11	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	812.638148255421	35	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACATGCTTGTGTGCGCG	NA	False	NA	NA	False	NA	NA	NA	72974409	72965732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72969886_72971418_72971595_72971878_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
51151	chr2	-	2541	1	NIC	ENSMUSG00000048327.7	novel	3137	9	NA	NA	26427	-35	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	76	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATATCTAAAATAAAAACC	NA	False	NA	NA	False	NA	NA	NA	129112705	129110164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_129110200_129112700
51153	chr14	+	1614	13	FSM	ENSMUSG00000004561.15	ENSMUST00000165100.8	1430	13	-109	-75	-62	0	multi-exon	FALSE	canonical	3	48	junction_7	37.728102552636	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	52122236	52129325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
51154	chr8	-	1487	1	FSM	ENSMUSG00000030735.7	ENSMUST00000032981.7	1356	1	112	-243	112	243	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	6451	False	NA	NA	False	NA	NA	NA	67968130	67966643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_67966600_67968100
51156	chr19	-	1800	4	NIC	ENSMUSG00000025204.11	novel	680	5	NA	NA	-6	0	intron_retention	FALSE	canonical	3	4404	junction_1	260.926979994191	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCTCTGGTTTCTGTGT	2003	False	NA	NA	False	NA	NA	NA	44543850	44538691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44538852_44541136_44541293_44542107_44543497_44543755
51157	chr1	-	1520	11	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTCCTTCTCTAAGAAT	NA	False	NA	NA	False	NA	NA	NA	59750658	59724146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724350_59740086_59740109_59741969_59742110_59743225_59743366_59743777_59743938_59744776_59744914_59745789_59745926_59746160_59746222_59748159_59748293_59749650_59749810_59750429
51158	chr6	-	2549	22	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	328.874049735714	1	141	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAAATCTAATTCTTT	3054	False	NA	NA	False	NA	NA	NA	71885728	71857635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865548_71865648_71866555_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884739_71884831_71885617
51159	chr16	-	2487	7	ISM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	63826	11	1438	-8	3prime_fragment	FALSE	canonical	3	439	junction_6	35.3949933684915	286	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTGTAAAGCTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	20181318	20150063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931
51160	chr3	-	1423	11	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	31	0	intron_retention	FALSE	canonical	3	11	junction_10	356.963079323338	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88858457	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858175
51161	chr10	+	1499	5	NNC	ENSMUSG00000020265.17	novel	1005	5	NA	NA	15	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	582.186127883515	2	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTCTTGGCCTATGT	NA	False	NA	NA	False	NA	NA	NA	77442073	77453251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981_77452346_77452419
51162	chr8	+	2159	16	NNC	ENSMUSG00000031657.17	novel	3251	15	NA	NA	26	0	intron_retention	FALSE	non_canonical	0	0	junction_14	96.0499869859439	16	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	NA	NA	NA	88864509	88898655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893792_88897190_88897218_88898569
51164	chr17	+	3730	1	Intergenic	novelGene_290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCCTATCTTTTAGAAAA	NA	False	NA	NA	False	NA	NA	NA	69258924	69262654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_69258900_69262700
51165	chr10	+	1891	12	NNC	ENSMUSG00000019794.14	novel	1774	11	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	183.306048558187	2	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTGTTTCAATTTAGCA	NA	False	NA	NA	False	NA	NA	NA	7601774	7638912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7619790_7619931_7624539_7624662_7627307_7627414_7628518_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
51167	chr9	-	1357	7	NIC	ENSMUSG00000066839.13	novel	1673	9	NA	NA	12	0	combination_of_known_junctions	TRUE	canonical	1	3	junction_6	88.1394097753982	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5908	False	NA	NA	False	NA	NA	NA	21996711	21983541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21996644
51168	chr11	+	1616	5	FSM	ENSMUSG00000020903.14	ENSMUST00000021286.11	1638	5	20	2	-1	-2	multi-exon	FALSE	canonical	3	5	junction_4	126.986957991756	41	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCTCTGGAGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	67857314	67878431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67877150
51171	chr5	+	1658	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	-5	-80	intron_retention	FALSE	canonical	0	0	junction_3	238.070577770543	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATAACAGCACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	100187921	100216539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100188162_100206998_100207101_100208832_100209031_100210012_100210135_100211617_100211732_100215657
51172	chr14	+	1320	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	-4	12	-4	-12	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	4	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTTGTATTTAATTT	NA	False	NA	NA	False	NA	NA	NA	73747460	73755973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
51173	chr12	-	1775	7	Antisense	novelGene_ENSMUSG00000060073.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAACGTAGAGGCTGACA	NA	False	NA	NA	False	NA	NA	NA	71036439	71025533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_71025586_71025674_71025780_71030089_71030216_71031265_71031369_71031445_71031514_71033630_71033710_71035197
51174	chr14	-	3894	1	Genic_Genomic	ENSMUSG00000115691.2	novel	NA	NA	NA	NA	12591	2161	mono-exon	FALSE	NA	NA	NA	NA	NA	1	185	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGTCTTATTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	32027351	32023457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_32023500_32027400
51176	chr6	-	1299	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	58	-238	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	697.240911657433	3	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTATACATGAGACCCTAAG	NA	False	NA	NA	False	NA	NA	NA	124791201	124787792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124788479_124788562_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
51177	chr13	-	963	2	Intergenic	novelGene_1475	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCCGAACCCTGGGACT	4065	False	NA	NA	False	NA	NA	NA	74750288	74624141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_74624307_74749490
51178	chr7	+	2192	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	-29	14	0	-14	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	1	101	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTAAGTCCTTAGGAGGT	624	False	NA	NA	False	NA	NA	NA	4743154	4750499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
51180	chr15	-	1937	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	159	0	20	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	99670323	99633472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
51181	chr1	-	1760	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	49	22	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	7	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTTAAAGTCTGCGCCA	4389	False	NA	NA	False	NA	NA	NA	59158916	59139726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
51182	chr11	-	1478	12	NNC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1373.95909811966	2946	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGGCTGTAGTGTCT	7740	False	NA	NA	False	NA	NA	NA	102298318	102293969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295833_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
51184	chr9	+	775	4	ISM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	6	29795	6	-21252	5prime_fragment	FALSE	canonical	3	205	junction_3	10.3387082795139	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTCTCTCTC	2632	False	NA	NA	False	NA	NA	NA	54771078	54790019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602
51186	chr11	-	2501	11	NNC	ENSMUSG00000018537.17	novel	1755	13	NA	NA	-33	-7	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	83.2804899121037	764	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTCAAGCCTGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	97590507	97579655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97581185_97581421_97581550_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
51187	chr2	-	1075	9	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-7	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1907.88585546935	3	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAATGAGAAAATCAGTCT	9580	False	NA	NA	False	NA	NA	NA	10085245	10060853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064315_10064525_10068243_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
51188	chr13	+	3698	9	ISM	ENSMUSG00000021559.15	ENSMUST00000044083.9	5304	27	134118	10	-17667	-10	intron_retention	TRUE	canonical	3	41	junction_2	7.66077672302228	39	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCACTTGATTGTCTAGTC	NA	False	NA	NA	False	NA	NA	NA	60884142	60910995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_60884157_60887868_60887947_60895914_60896138_60897006_60897196_60898944_60899143_60900027_60900167_60901922_60902044_60905162_60905352_60908448
51190	chr1	-	3442	15	NIC	ENSMUSG00000026409.15	novel	4505	16	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	7.01492577818678	36	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGTACAATGAAATTTTC	3907	False	NA	NA	False	NA	NA	NA	130643563	130616925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_130618886_130626415_130626481_130626924_130626988_130627717_130627848_130628506_130628612_130629441_130629589_130629967_130630176_130633113_130633239_130634162_130634220_130634579_130634655_130634788_130634856_130635245_130635343_130635812_130635939_130642202_130642314_130643457
51191	chr2	-	3801	2	ISM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	49	45711	31	1748	5prime_fragment	FALSE	canonical	3	148	junction_1	0	2	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCCAGAATAAAAGCCCTT	NA	False	NA	NA	False	NA	NA	NA	152673599	152668298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_152672023_152673522
51192	chr7	-	1697	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	186	167	1	-167	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	175	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGCGTGGCACTTCTTT	NA	False	NA	NA	False	NA	NA	NA	126721212	126706452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
51193	chr14	-	2607	18	NNC	ENSMUSG00000021948.18	novel	2777	18	NA	NA	-2289	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_17	28.3570902504832	18	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAACCTGGCTGTGGGGA	NA	False	NA	NA	False	NA	NA	NA	30334548	30317316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30334481
51194	chr14	+	1320	9	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	294.449804720601	1057	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	NA	False	NA	NA	NA	122419127	122639646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122419194_122548655_122548843_122558374_122558476_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
51195	chr14	-	1090	8	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-21	2427	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1881.36301003028	2	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTAATCCTTATTGTTA	NA	False	NA	NA	False	NA	NA	NA	36857250	36847116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36847289_36847862_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
51196	chr2	-	2029	2	ISM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	3538	17	3476	-17	3prime_fragment	FALSE	canonical	3	944	junction_1	0	2	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTTGATATGTGAAACAT	3294	False	NA	NA	False	NA	NA	NA	152182414	152179358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_152180608_152181634
51197	chr6	+	4288	17	FSM	ENSMUSG00000064080.13	ENSMUST00000113498.9	4644	17	348	8	-19	-8	multi-exon	FALSE	canonical	2	6	junction_1	5.3370755100523	20	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGGTTATTCAGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	91189784	91249513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_91189883_91210044_91211334_91227839_91227952_91229425_91229556_91231422_91231604_91233216_91233427_91233861_91233976_91234706_91234809_91240320_91240456_91241680_91241819_91242699_91242844_91242937_91243067_91243296_91243423_91245519_91245637_91246069_91246199_91246945_91247070_91248503
51198	chr7	+	1509	10	NIC	ENSMUSG00000030805.15	novel	1456	11	NA	NA	6	8	intron_retention	FALSE	canonical	3	172	junction_3	25.7681974534502	481	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCTTGGAGCCAGCTGT	NA	False	NA	NA	False	NA	NA	NA	127440941	127448180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447840_127447922
51199	chr13	-	1411	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-1	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	2	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314338	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311989_34312287_34312515_34312854_34312966_34313228_34313338_34314159
51200	chr15	+	1098	2	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98449	-150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGCAGATAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	98829322	98935841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98829985_98935405
51201	chr6	+	3038	6	FSM	ENSMUSG00000062519.14	ENSMUST00000079881.11	2906	6	107	-239	76	239	multi-exon	FALSE	canonical	3	16	junction_3	4.17612260356422	33	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTATGGTCCTCAGC	NA	False	NA	NA	False	NA	NA	NA	47812704	47844861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_47812855_47817185_47817582_47835862_47835990_47836352_47836467_47840037_47840152_47842724
51202	chr5	+	1025	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2648.27031729568	6	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTGTGTTAAGCTG	NA	False	NA	NA	False	NA	NA	NA	108048427	108055916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049801_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
51204	chr18	-	1229	15	Antisense	novelGene_ENSMUSG00000117747.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGCGGGGTAGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	90555291	90528327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_90528501_90529401_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539160_90541651_90541754_90542404_90542478_90545993_90546066_90548182_90548280_90551103_90551163_90551342_90551396_90551711_90551813_90552501_90552563_90555198
51205	chr11	+	1433	5	NNC	ENSMUSG00000048277.16	novel	1520	4	NA	NA	3	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	278.062380591118	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCAGCGTGTTGTGC	NA	False	NA	NA	False	NA	NA	NA	117700511	117705099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103_117704324_117704382
51206	chr16	+	2283	4	NIC	ENSMUSG00000022982.11	novel	641	5	NA	NA	-1	162	intron_retention	FALSE	canonical	0	0	junction_1	366.254010216953	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCACTTATTTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	90017640	90023379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_90017818_90019667_90021314_90022032_90022151_90023037
51207	chr9	+	479	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	224	-213	224	213	mono-exon	FALSE	NA	NA	NA	NA	NA	139	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	96777934	96778413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777900_96778400
51209	chr7	+	2955	20	NNC	ENSMUSG00000052512.18	novel	10665	39	NA	NA	4840	325	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	4.84553654167743	16	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAAACGTAAGATTCCA	NA	False	NA	NA	False	NA	NA	NA	49208479	49256894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_49208645_49213818_49213872_49214832_49214857_49214953_49215029_49220439_49220524_49220881_49220994_49222055_49222208_49225395_49225569_49232551_49232706_49233797_49233961_49234891_49234993_49237454_49237551_49238897_49239067_49243964_49244201_49246902_49247058_49247249_49247322_49248024_49248222_49248511_49248631_49254172_49254377_49256443
51210	chr8	+	1277	4	FSM	ENSMUSG00000031556.7	ENSMUST00000033961.7	1281	4	4	0	4	0	multi-exon	FALSE	canonical	3	225	junction_1	26.3185612575358	973	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGAGTATTTC	NA	False	NA	NA	False	NA	NA	NA	25507230	25513276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_25507609_25508081_25508170_25510454_25510571_25512581
51212	chr8	-	4487	34	FSM	ENSMUSG00000031583.14	ENSMUST00000033990.7	5019	34	-29	561	7	-559	multi-exon	FALSE	canonical	3	28	junction_14	7.07885533384216	11	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAAGCTCACCTAAACGT	NA	False	NA	NA	False	NA	NA	NA	33875529	33726270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_33726488_33730976_33731183_33738949_33739113_33741732_33741865_33745525_33745641_33746976_33747090_33747225_33747302_33756978_33757053_33757812_33757886_33758750_33758849_33758923_33759095_33770799_33770942_33774645_33774739_33775164_33775267_33778783_33778966_33782585_33782761_33784931_33785120_33795681_33795789_33800738_33800822_33806371_33806441_33807225_33807335_33807573_33807642_33809179_33809256_33810497_33810637_33812315_33812397_33814194_33814622_33819129_33819245_33824203_33824274_33826024_33826175_33833004_33833154_33833574_33833721_33842101_33842215_33843322_33843428_33875369
51213	chr3	-	1791	11	NNC	ENSMUSG00000033439.13	novel	3402	12	NA	NA	2184	-24	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	47.6470355845985	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAACAGTATAAATTTATAA	NA	False	NA	NA	False	NA	NA	NA	116386133	116374767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383535_116383761_116383878_116383942_116385841_116385909_116386112
51214	chr16	-	3501	16	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	1	0	intron_retention	FALSE	canonical	3	59	junction_1	13.1182654679988	12	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8205	False	NA	NA	False	NA	NA	NA	4782055	4759299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
51215	chr10	+	1166	4	NNC	ENSMUSG00000019804.13	novel	1401	4	NA	NA	-98	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	983.423950626924	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGAAATGCATTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	42378187	42411354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_42378427_42401949_42402046_42409144_42409270_42410648
51216	chr17	+	185	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1269	395	1269	-395	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACAAGTGGCGTTCAGC	NA	False	NA	112	True	NA	NA	NA	40158512	40158697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40158500_40158700
51218	chr6	+	1178	8	Antisense	novelGene_ENSMUSG00000030357.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCCACTTTCATGGTTG	7739	False	NA	NA	False	NA	NA	NA	128407639	128412766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_128407846_128409386_128409624_128410067_128410254_128410487_128410575_128410667_128410765_128411271_128411422_128411713_128411832_128412669
51219	chr11	-	2279	5	NNC	ENSMUSG00000011254.17	novel	2250	6	NA	NA	3	-1021	intron_retention	FALSE	canonical	1	2	junction_4	51.6405848146591	7	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGAGGAGTCATTTTTA	6315	False	NA	NA	False	NA	NA	NA	45846307	45838690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_45839156_45841022_45841131_45842369_45843732_45844882_45845021_45846101
51220	chrX	+	3367	8	Antisense	novelGene_ENSMUSG00000091736.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	174	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCAGGAACTAAAGTGCTA	NA	False	NA	NA	False	NA	NA	NA	156330875	156381659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_156333186_156341880_156342061_156344377_156344497_156355851_156355982_156359078_156359182_156374347_156374553_156376717_156376870_156381491
51221	chr11	+	2256	1	Antisense	novelGene_ENSMUSG00000020326.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAACCTAAGCCCTGGAT	NA	False	NA	NA	False	NA	NA	NA	40643339	40645595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_40643300_40645600
51222	chr4	-	2775	4	FSM	ENSMUSG00000048485.13	ENSMUST00000053042.6	3288	4	8	505	8	-1	multi-exon	FALSE	canonical	2	5	junction_2	3.09120616516523	32	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTTTGCTTGTATTTT	747	False	NA	NA	False	NA	NA	NA	129334603	129320062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129321621_129322220_129322400_129326103_129327105_129334566
51223	chr17	-	2377	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	-70	13	-8	-9	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	1	119	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGCCCCACATGCAGCCT	NA	False	NA	NA	False	NA	NA	NA	34250664	34247255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
51224	chr16	-	2350	7	NIC	ENSMUSG00000044626.14	novel	2065	10	NA	NA	-7471	-1963	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	86.7813343985906	1157	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTAAGACTAATTAAAGCA	NA	False	NA	NA	False	NA	NA	NA	21802974	21776296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_21777705_21784703_21784800_21786734_21786903_21792807_21792892_21794982_21795085_21800085_21800195_21802591
51225	chr3	+	2238	3	ISM	ENSMUSG00000056476.14	ENSMUST00000197374.2	3900	17	44254	-890	44254	890	3prime_fragment	FALSE	canonical	3	11	junction_1	2	2	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGAGGAAGGTAAATCAT	NA	False	NA	NA	False	NA	NA	NA	59208736	59224213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_59208797_59220273_59220356_59222117
51226	chr3	+	1469	1	ISM	ENSMUSG00000056476.14	ENSMUST00000199659.5	11006	44	310447	280	59872	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	16	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCTTCCAAAAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	59224354	59225823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_59224400_59225800
51227	chr10	-	1477	8	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	-3	-181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	776.132694314364	2	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGGGTTCCTATTACT	NA	False	NA	NA	False	NA	NA	NA	127358274	127353188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354368_127355839_127356041_127356206_127356287_127356786_127356976_127358156
51228	chr1	-	1069	7	NNC	ENSMUSG00000062963.11	novel	1007	7	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	233.179056139745	2175	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	7360	False	NA	NA	False	NA	NA	NA	171122520	171116135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117929_171122206_171122401_171122493
51229	chr7	+	1449	3	FSM	ENSMUSG00000045752.14	ENSMUST00000177841.8	1364	3	-81	-4	38	-2	multi-exon	FALSE	canonical	3	124	junction_2	18	212	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGTGTGGCTTTTTCCGG	NA	False	NA	NA	False	NA	NA	NA	142623023	142624828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142623251_142623491_142623558_142623672
51230	chr7	+	1401	7	NIC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	-3	323	combination_of_known_splicesites	TRUE	canonical	2	4	junction_4	173.079622011245	46	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	NA	False	NA	NA	NA	100142540	100148832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_100142673_100143420_100143583_100145932_100146156_100146301_100146513_100147554_100147657_100147942_100148124_100148442
51231	chr7	+	1771	4	NNC	ENSMUSG00000038503.16	novel	489	4	NA	NA	-55	1103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	621.56951877217	1	99	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGGTATATTCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	83541482	83548391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544737_83544971_83546957_83547425_83547521
51232	chr9	+	1269	7	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	0	-3	intron_retention	FALSE	canonical	3	832	junction_5	87.3632264361461	77	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTTGAAAATGAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	20914213	20920124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20919196_20919789
51233	chr12	+	2167	11	FSM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	-10	1	-10	0	multi-exon	TRUE	canonical	3	29	junction_1	14.3544418212622	144	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	NA	False	NA	NA	NA	88327313	88428488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_88327366_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
51234	chr19	+	1388	7	FSM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	85	0	-9	0	multi-exon	FALSE	canonical	3	3675	junction_3	183.825475806689	7503	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATAGCCTCTGTCTCTCTT	3362	False	NA	NA	False	NA	NA	NA	4242148	4245419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
51235	chr13	-	3334	1	Intergenic	novelGene_1340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAAATAAATCTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	34300739	34297405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_34297400_34300700
51236	chr8	-	1483	8	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38788	-1	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_6	54.6308576927445	432	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTGTTTATTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	43633311	43582844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43618053_43618097_43633233
51237	chr17	-	2125	17	FSM	ENSMUSG00000063011.8	ENSMUST00000237359.2	2044	17	-84	3	-84	-2	multi-exon	FALSE	canonical	3	34	junction_13	11.5648646230728	89	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGATGTCCTGTAGTGT	6507	False	NA	NA	False	NA	NA	NA	25973436	25967591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105_25973197_25973316
51238	chr2	+	1737	3	ISM	ENSMUSG00000027203.16	ENSMUST00000082122.14	1020	7	527	5311	-183	3409	internal_fragment	FALSE	canonical	3	2378	junction_2	7	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTGGGGCAAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	125089636	125094357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_125089817_125091085_125091178_125092892
51242	chr12	-	2307	13	Antisense	novelGene_ENSMUSG00000020594.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAGCCAAAGTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	8800142	8774153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_8774178_8778631_8778775_8778853_8779146_8783268_8783507_8793757_8794027_8794334_8794459_8794604_8794740_8797152_8797309_8798108_8798235_8798395_8798518_8798758_8798952_8799586_8799919_8799989
51244	chr2	+	1788	10	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	93.1034205256727	1	62	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTGGTGTGTTATTTT	80	False	NA	NA	False	NA	NA	NA	13579121	13587636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579432_13579476_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
51245	chr11	+	2113	12	FSM	ENSMUSG00000018932.10	ENSMUST00000019076.10	2198	12	24	61	3	-44	multi-exon	FALSE	canonical	3	361	junction_6	27.3405217988137	13	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCAGGAACCTATTGCT	NA	False	NA	NA	False	NA	NA	NA	60822882	60843576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
51246	chr6	-	398	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	9	110	9	-103	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	42	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCATCAGAGTCACCAAT	NA	False	NA	NA	False	NA	NA	NA	115785699	115782575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
51247	chr5	-	1193	9	Antisense	novelGene_ENSMUSG00000107331.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCACACACGAGCGCCAGC	NA	False	NA	NA	False	NA	NA	NA	73471235	73450183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_73450318_73451306_73451352_73451625_73451690_73452267_73452350_73458006_73458059_73460932_73460979_73461886_73462027_73463919_73464097_73470782
51248	chr6	-	2430	9	ISM	ENSMUSG00000030302.18	ENSMUST00000089003.12	7067	20	94350	17119	-40175	-14166	internal_fragment	FALSE	canonical	3	15	junction_4	8.63133825081603	1	40	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGGGCGCCTGCATTACA	NA	False	NA	NA	False	NA	NA	NA	113774150	113739748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_113739918_113740498_113740606_113742681_113742770_113742948_113743129_113750221_113750457_113751165_113751408_113766713_113766957_113770626_113770842_113773199
51249	chrX	-	2082	10	NIC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	-5	-801	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	11.2940495640649	146	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGAGTCTTGATTCATA	NA	False	NA	NA	False	NA	NA	NA	36253149	36179484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
51250	chr15	+	1240	1	Antisense	novelGene_ENSMUSG00000036197.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGACGGAATCATCCTCAAG	NA	False	NA	NA	False	NA	NA	NA	93141744	93142984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_93141700_93143000
51251	chr8	-	3715	10	FSM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	33	959	18	-959	multi-exon	FALSE	canonical	3	94	junction_4	8.95392871906924	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATACTCAGTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	81741524	81708320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_81708610_81711066_81712430_81714115_81714223_81716635_81716730_81719824_81720019_81722310_81722470_81727681_81727784_81731960_81732091_81738795_81738932_81740383
51253	chr7	+	1093	4	NIC	ENSMUSG00000059070.17	novel	1027	6	NA	NA	-114	0	intron_retention	FALSE	canonical	3	7563	junction_3	311.94479568596	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	6889	False	NA	NA	False	NA	NA	NA	45368461	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45368764_45368952_45369061_45369343_45369912_45370137
51254	chr6	-	2688	4	FSM	ENSMUSG00000038074.17	ENSMUST00000046520.13	2694	4	1	5	1	-4	multi-exon	FALSE	canonical	3	17	junction_2	2.16024689946929	59	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTAGTTTTGTACATGT	NA	False	NA	NA	False	NA	NA	NA	54570161	54554593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_54556672_54562787_54562916_54566257_54566410_54569831
51255	chr6	+	1338	10	NNC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	0	-15	intron_retention	FALSE	non_canonical	0	0	junction_6	449.509389621646	3	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAATATGCAAGAAGGTGA	5421	False	NA	NA	False	NA	NA	NA	83031709	83034359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83033122_83033348_83033422_83033522_83033626_83033737_83033860_83033958_83034075_83034256
51256	chr7	-	2504	12	NNC	ENSMUSG00000035547.15	novel	4498	13	NA	NA	64	-64	intron_retention	FALSE	canonical	2	4	junction_8	46.9069766965418	1	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCCTCAGTGTTTGGAG	NA	False	NA	NA	False	NA	NA	NA	97827417	97772931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_97773263_97774448_97774586_97775035_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782168_97784966_97785176_97801018_97801151_97811122_97811318_97827250
51257	chr11	-	2210	5	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	413.65353860447	1	121	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6394	False	NA	NA	False	NA	NA	NA	102076084	102053322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054994_102056185_102056313_102057912_102058015_102073683_102073818_102075908
51258	chr1	+	1737	3	Antisense	novelGene_ENSMUSG00000038633.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCGAGGCCCGGCTCTAG	NA	False	NA	NA	False	NA	NA	NA	182103594	182110319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182104465_182106549_182107284_182110186
51260	chr4	-	2624	9	NNC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	-3	-8	intron_retention	FALSE	canonical	1	1	junction_8	18.172351939141	1	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGCACTTGTTCAGTGTC	8676	False	NA	NA	False	NA	NA	NA	152112121	152104240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152111517_152112023
51261	chr11	+	1627	11	FSM	ENSMUSG00000020385.17	ENSMUST00000109113.8	1627	11	-2	2	-2	0	multi-exon	FALSE	canonical	1	3	junction_1	50.5050492525252	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	NA	False	NA	NA	NA	51154010	51172591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51154097_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
51262	chr17	+	843	1	Antisense	novelGene_ENSMUSG00000072082.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTATGGGACTCGAGCT	NA	False	NA	NA	False	NA	NA	NA	24442239	24443082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24442200_24443100
51263	chr5	-	2596	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	228	4	228	-1	multi-exon	FALSE	canonical	3	50	junction_3	8.99382504215469	52	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTACTTCATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	33815532	33810563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
51264	chr17	+	3293	6	FSM	ENSMUSG00000038910.8	ENSMUST00000043938.8	4185	6	488	404	488	-404	multi-exon	FALSE	canonical	3	70	junction_1	9.88736567544662	60	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGCCCAAACATGCTGT	NA	False	NA	NA	False	NA	NA	NA	50816918	50995108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_50816966_50913322_50915810_50918019_50918224_50947143_50947220_50975026_50975137_50994739
51265	chr2	+	1072	8	ISM	ENSMUSG00000026921.21	ENSMUST00000100290.13	1348	10	5181	0	-290	0	3prime_fragment	FALSE	canonical	3	26	junction_7	112.12292816551	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	2587	False	NA	NA	False	NA	NA	NA	26479056	26482693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482254_26482429
51266	chr5	-	1252	2	NNC	ENSMUSG00000055302.6	novel	1648	2	NA	NA	64	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	76	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGATCAGCCCGGAGAG	NA	False	NA	NA	False	NA	NA	NA	36954052	36952262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_36953289_36953826
51268	chr10	-	2330	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	2	-47	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	1	111	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATAAAGGCTTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	116417393	116321117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
51269	chr1	-	1631	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	36	-8	36	8	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	163	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAACGCCTAATTTTC	NA	False	NA	NA	False	NA	NA	NA	36722228	36639048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
51270	chr10	-	2210	9	FSM	ENSMUSG00000003344.15	ENSMUST00000126980.8	2449	9	233	6	-123	0	multi-exon	TRUE	canonical	3	325	junction_4	58.371118714652	270	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGAGTGCTATGTTGTC	NA	False	NA	NA	False	NA	NA	NA	80492095	80478456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80479526_80479659_80479807_80480095_80480184_80480436_80480630_80481173_80481372_80482214_80482321_80483538_80483696_80484393_80484514_80491963
51271	chr5	+	1781	2	ISM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	2	12	2	-7	intron_retention	FALSE	canonical	3	507	junction_1	0	7	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTCACAGAGTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	124254163	124256247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_124254675_124254977
51272	chr15	+	1772	5	NNC	ENSMUSG00000000346.10	novel	2135	4	NA	NA	284	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	596.354078966515	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGCCAGCATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100513513	100518637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248_100517613_100517686
51273	chr4	+	2465	1	Genic_Genomic	ENSMUSG00000029038.10	novel	NA	NA	NA	NA	10974	1895	mono-exon	FALSE	NA	NA	NA	NA	NA	3	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAGACCGTATCAGATT	NA	False	NA	NA	False	NA	NA	NA	155800565	155803030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_155800600_155803000
51274	chr3	-	1184	1	Genic_Genomic	ENSMUSG00000105260.2	novel	NA	NA	NA	NA	3592	467	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATTGTACTTGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	41432728	41431544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_41431500_41432700
51275	chr7	-	1178	2	Antisense	novelGene_ENSMUSG00000072244.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	1	2	junction_1	0	2	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGAGGAGCAGGGACGG	NA	False	NA	NA	False	NA	NA	NA	103883173	103881949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_103882803_103882848
51276	chr4	+	2242	2	FSM	ENSMUSG00000035561.6	ENSMUST00000044384.5	2298	2	56	0	-43	0	multi-exon	FALSE	canonical	3	42	junction_1	0	134	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTATCACTGTTTTCCTT	-27	True	NA	NA	False	NA	NA	NA	45799077	45804604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_45799170_45802454
51277	chr14	+	995	13	NNC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	512.013692036974	9	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	NA	False	NA	NA	NA	79825200	79866417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862388_79862463_79866291
51278	chr11	+	4780	36	Antisense	novelGene_ENSMUSG00000018800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	12	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCGCCCCGCTACGCCGA	NA	False	NA	NA	False	NA	NA	NA	110166100	110228503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_110166240_110167279_110167402_110168214_110168309_110168387_110168464_110168996_110169173_110169934_110170026_110170116_110170236_110170451_110170578_110176518_110176612_110177589_110177662_110178401_110178543_110178888_110179001_110180614_110180788_110182911_110183025_110184064_110184203_110184611_110184744_110187296_110187462_110188859_110189064_110190716_110190836_110192237_110192383_110192561_110192648_110193818_110193958_110194918_110195041_110195676_110195851_110197069_110197182_110200215_110200275_110200962_110201131_110202135_110202283_110204152_110204341_110205346_110205491_110208526_110208758_110210619_110210709_110217385_110217545_110218554_110218762_110219961_110220083_110228419
51280	chr19	-	2164	18	FSM	ENSMUSG00000025041.18	ENSMUST00000236501.2	3183	18	17	1002	17	336	multi-exon	FALSE	canonical	3	7	junction_17	35.7064153463466	4	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAATCATAGCTACTTCAG	7597	False	NA	NA	False	NA	NA	NA	46950342	46877110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950026
51281	chr7	-	1855	6	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	9	-8	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	21.6277599394852	25	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCAGTCAGGACGAGTCC	NA	False	NA	NA	False	NA	NA	NA	30298325	30289115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30298204
51282	chr7	+	1410	9	ISM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	7	146	4	0	intron_retention	FALSE	canonical	3	419	junction_3	30.3840007240653	1143	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	118	False	NA	NA	False	NA	NA	NA	126248487	126271951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327
51283	chr12	+	1456	10	NNC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	1	37	junction_1	268.457781125662	25	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTGAAGTTCATACAGAT	NA	False	NA	NA	False	NA	NA	NA	59060176	59075177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59060345_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
51285	chr2	-	1088	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	78	0	-5	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	2	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	NA	False	NA	NA	NA	10085243	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
51287	chr11	-	2005	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	3	6	3	-6	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	234	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTATTCTTATCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	77971206	77964207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
51288	chr18	+	3184	2	Antisense	novelGene_ENSMUSG00000047879.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	11	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATTGATATTTGGCCTA	NA	False	NA	NA	False	NA	NA	NA	10039515	10047411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_10039644_10044355
51289	chr14	+	1486	11	NNC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	117	251	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	455.430302022164	619	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCAGCGTTTGTTGACCT	NA	False	NA	NA	False	NA	NA	NA	55253027	55261845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55253198_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
51290	chr14	-	601	1	Intergenic	novelGene_515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCTCTACTCGAAGGTG	NA	False	NA	NA	False	NA	NA	NA	13670472	13669871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_13669900_13670500
51291	chr5	+	2117	1	ISM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	79392	13	24326	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCCAACCGTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	93320687	93322804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_93320700_93322800
51292	chr10	-	983	1	Genic_Genomic	ENSMUSG00000050157.7	novel	NA	NA	NA	NA	1909	3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTATGTCTCCTGTTAG	6886	False	NA	NA	False	NA	NA	NA	75774536	75773553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_75773600_75774500
51293	chrX	+	1531	2	FSM	ENSMUSG00000073207.2	ENSMUST00000101588.2	1536	2	11	-6	11	6	multi-exon	FALSE	canonical	3	142	junction_1	0	234	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCTGTGATTCTTGAAA	NA	False	NA	NA	False	NA	NA	NA	51880087	51888351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_51880203_51886935
51294	chr10	+	1749	8	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	163	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1291.91446295482	4	86	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTCCTGTACATTTTCAC	1066	False	NA	NA	False	NA	NA	NA	127895042	127913114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906098_127907936_127908027_127910090_127910154_127911206_127911232_127911935
51295	chr14	+	1229	3	ISM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	120	5735	120	-4850	intron_retention	FALSE	canonical	3	39	junction_2	2.5	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGATCCTAGACTTCCCA	1448	False	NA	NA	False	NA	NA	NA	55855613	55857117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_55855811_55856002_55856116_55856198
51296	chr17	-	2129	2	NNC	ENSMUSG00000036533.10	novel	2265	2	NA	NA	10292	4	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	92	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACGTGTTCATTTATAGT	NA	False	NA	NA	False	NA	NA	NA	79650144	79641151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79643146_79650009
51297	chr19	-	1734	4	Antisense	novelGene_ENSMUSG00000071655.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCAGGGCCAGACCTGGT	NA	False	NA	NA	False	NA	NA	NA	8853022	8850738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8851072_8851160_8851209_8851500_8852716_8852884
51298	chrX	-	4128	4	Fusion	ENSMUSG00000106388.2_ENSMUSG00000081195.3	novel	322	3	NA	NA	-19	102	multi-exon	FALSE	canonical	2	3	junction_3	4.54606056566195	11	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCTCAGGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	36865103	36857920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_36858142_36859175_36859222_36861051_36864809_36864999
51299	chr2	-	1683	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	-1	0	-1	0	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	1200	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGGATCCATG	9000	False	NA	NA	False	NA	NA	NA	25246372	25242301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
51300	chr9	+	1672	10	NNC	ENSMUSG00000004100.13	novel	1670	11	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_2	278.599052580524	2	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	NA	False	NA	NA	NA	20799542	20803474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20799614_20799702_20799878_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802503_20802582_20802662_20802746_20803044_20803127
51302	chrX	-	710	7	Antisense	novelGene_ENSMUSG00000001131.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATAAATGTCCATGCGA	NA	False	NA	NA	False	NA	NA	NA	20769168	20736505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20736559_20737266_20737398_20739011_20739094_20739286_20739414_20739604_20739732_20758638_20758727_20769066
51303	chr5	+	1520	12	NNC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	-4	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	209.965404470308	30	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTCTTTCAAGTCTTT	5860	False	NA	NA	False	NA	NA	NA	31855335	32242292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31942963_31977813_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
51304	chr10	+	2005	18	NNC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	146.61856451421	1	86	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	NA	False	NA	NA	NA	93289276	93320737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93307135_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314403_93316610_93316649_93318111_93318195_93318823_93318929_93320524
51305	chr3	+	2075	12	NIC	ENSMUSG00000050150.17	novel	2248	13	NA	NA	6	1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	39.9576221796034	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTATGTCTCATGATTT	NA	False	NA	NA	False	NA	NA	NA	135053800	135103586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135053859_135054090_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720_135099830_135103356
51308	chr11	+	2581	19	FSM	ENSMUSG00000018372.14	ENSMUST00000103068.10	2597	19	14	2	-9	-2	multi-exon	FALSE	canonical	0	0	junction_9	19.4787792098523	37	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGCTTTTGAATTTATA	5110	False	NA	NA	False	NA	NA	NA	106680091	106709684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
51309	chrX	+	2890	8	NNC	ENSMUSG00000072479.11	novel	864	8	NA	NA	948	-3	intron_retention	TRUE	canonical	0	0	junction_1	187.640124511072	3	93	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCTGTGTTCAGCACAT	NA	False	NA	NA	False	NA	NA	NA	72193349	72202475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72193453_72194811_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72201499_72201594
51310	chr14	-	2281	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	-291	654	2	116	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	140	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	6654	False	NA	NA	False	NA	NA	NA	31363212	31329809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
51311	chr2	+	2830	1	NIC	ENSMUSG00000032966.15	novel	1658	5	NA	NA	12010	-404	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGACCAGAGGCCACAACC	NA	False	NA	NA	False	NA	NA	NA	151399339	151402169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_151399300_151402200
51313	chr13	-	1904	9	NNC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	-144	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	413.689799245763	485	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	5761	False	NA	NA	False	NA	NA	NA	56283588	56221434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283438
51315	chr2	-	1183	5	FSM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	11	-7	-8	0	multi-exon	FALSE	canonical	3	80	junction_4	253.22754095872	2098	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	29983636	29980955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983458
51316	chr2	-	1433	5	NIC	ENSMUSG00000027613.16	novel	1500	6	NA	NA	-32	-5	intron_retention	FALSE	canonical	3	1052	junction_4	270.173092664684	100	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATCCTCAGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	155668615	155661761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155662032_155664756_155665289_155665784_155665961_155668044_155668131_155668246
51318	chr11	+	1715	10	NNC	ENSMUSG00000059552.14	novel	1771	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	672.180714971983	2	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	NA	False	NA	NA	NA	69471228	69482698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69471342_69477716_69477800_69478187_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
51319	chr9	+	1487	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	-21	937	9	-212	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	2	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAAGCCCTGGATTTTT	NA	False	NA	NA	False	NA	NA	NA	54493773	54511008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
51321	chr10	+	1875	3	FSM	ENSMUSG00000019851.9	ENSMUST00000019998.9	1952	3	82	-5	82	5	multi-exon	FALSE	canonical	3	42	junction_2	1	95	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCTTTGTAGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	18720849	18732826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_18721155_18729284_18729426_18731397
51322	chr19	+	1060	5	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	9	2	intron_retention	FALSE	non_canonical	0	0	junction_4	2714.10412244998	20	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540552	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543590_5543643
51323	chrX	+	1609	9	NNC	ENSMUSG00000087368.8	novel	3201	10	NA	NA	5	1493	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.8943792847505	5	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTCATATAGATTGTAT	NA	False	NA	NA	False	NA	NA	NA	135642599	135662122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_135642709_135644151_135644210_135645241_135645458_135648071_135648198_135658849_135658946_135659308_135659508_135660604_135660668_135661166_135661325_135661538
51325	chr19	-	2735	23	NNC	ENSMUSG00000024960.10	novel	4558	30	NA	NA	-2041	-1756	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	147.480241007409	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCACACCTAACCCACTG	2270	False	NA	NA	False	NA	NA	NA	6949223	6933601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6949111
51326	chr11	+	1732	8	NNC	ENSMUSG00000020402.12	novel	891	8	NA	NA	30	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1167.28243613715	1	107	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTCATCCTCTTGTTGTT	3569	False	NA	NA	False	NA	NA	NA	52265119	52280217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278305_52279258
51328	chr11	-	383	3	Antisense	novelGene_ENSMUSG00000060938.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGATCTTCCTCCGAAT	NA	False	NA	NA	False	NA	NA	NA	68795357	68793192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_68793265_68794000_68794139_68795184
51329	chr2	-	1327	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-1039	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	4421.64781041808	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAGTTATTATAACAGT	3736	False	NA	NA	False	NA	NA	NA	154734751	154714376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730166_154730281_154734609
51330	chr3	+	2841	2	ISM	ENSMUSG00000047213.15	ENSMUST00000108346.5	4929	6	21561	688	21561	-688	3prime_fragment	FALSE	canonical	3	484	junction_1	0	1	125	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAACTTCTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	16258960	16270331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_16259589_16268118
51332	chr10	+	2591	20	FSM	ENSMUSG00000019854.18	ENSMUST00000126390.8	2595	20	16	-12	-3	0	multi-exon	FALSE	canonical	3	129	junction_9	41.6677266716506	153	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACATTGTATTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	17931703	18000892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17983415_17983497_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
51333	chr15	+	1313	6	NIC	ENSMUSG00000001285.13	novel	1319	6	NA	NA	4	0	intron_retention	FALSE	canonical	3	485	junction_1	11.5654658358408	1708	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	5942	False	NA	NA	False	NA	NA	NA	102240158	102246286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
51334	chr19	-	1609	4	FSM	ENSMUSG00000035171.10	ENSMUST00000038830.10	1614	4	3	2	3	-2	multi-exon	FALSE	canonical	3	194	junction_1	6.94422221866655	1177	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTGTGTGTCTTGTTGTT	456	False	NA	NA	False	NA	NA	NA	21630337	21574677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_21575699_21576118_21576233_21596472_21596580_21629970
51335	chr11	+	2216	4	FSM	ENSMUSG00000065094.3_ENSMUSG00000020812.19	ENSMUST00000144049.8	966	4	-39	-1211	0	0	multi-exon	FALSE	canonical	3	135	junction_1	19.4422220952236	151	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	116562494	116566624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763
51336	chr15	+	608	1	ISM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	7854	0	5684	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGTGTAGCAAAAATAG	4370	False	NA	NA	False	NA	NA	NA	79551253	79551861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_79551300_79551900
51337	chr10	-	1704	11	NNC	ENSMUSG00000019814.6	novel	2297	11	NA	NA	81	-464	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	222.512920973143	1	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAACGGAATTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	13068831	13054347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_13054693_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
51338	chr14	+	741	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2213.06731935565	18	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082897_76083056_76083109_76083693_76083834_76084133_76084240_76084683_76084801_76085538
51340	chr4	-	3572	15	FSM	ENSMUSG00000034171.14	ENSMUST00000049095.6	3827	15	250	5	-1	-5	multi-exon	FALSE	canonical	3	38	junction_1	8.32257809350258	49	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGATGATAAGAGTGAATAA	NA	False	NA	NA	False	NA	NA	NA	115874873	115853870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_115855813_115856017_115856164_115856695_115856805_115857245_115857286_115857983_115858025_115858300_115858401_115859654_115859753_115860173_115860300_115861551_115861677_115861910_115861952_115862196_115862404_115862497_115862632_115862783_115862919_115865376_115865491_115874659
51342	chr1	+	1484	4	NNC	ENSMUSG00000060679.15	novel	1009	7	NA	NA	-4930	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	350.754425013665	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCCTTTTTTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	42937286	42944843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_42938213_42938600_42938710_42942454_42942625_42944564
51343	chr3	-	1950	7	NNC	ENSMUSG00000055436.19	novel	2654	12	NA	NA	-1325	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	230.744266812128	1	89	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	157725076	157716555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718511_157719588_157719679_157721958_157722091_157723446_157723529_157724948
51344	chr15	-	987	9	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1166.02534679783	1	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTTTATTTTGCTTGA	2663	False	NA	NA	False	NA	NA	NA	43146115	43113456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125990_43126097_43126604_43126611_43138632_43138751_43141703_43141819_43145998
51345	chr17	+	2354	5	NNC	ENSMUSG00000024030.8	novel	644	3	NA	NA	-452	1289	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17.795715776557	4	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTCATTTAATTTCAAG	3918	False	NA	NA	False	NA	NA	NA	31329486	31334751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_31329741_31329930_31330032_31330194_31330354_31331902_31332022_31333030
51346	chr10	-	3946	32	NNC	ENSMUSG00000001119.8	novel	4100	35	NA	NA	142	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.0574116415631	34	27	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGTGCCTCTTTATCTA	8584	False	NA	NA	False	NA	NA	NA	76561860	76544627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76549014_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556877_76557236_76557366_76557649_76557810_76559209_76559411_76560772_76560903_76561653
51348	chr7	+	2079	3	FSM	ENSMUSG00000106236.3_ENSMUSG00000036854.15	ENSMUST00000044048.8	1363	3	-721	5	23	-1	multi-exon	FALSE	canonical	3	14	junction_1	10.5	132	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACTGCCTTATGTCTGG	NA	False	NA	NA	False	NA	NA	NA	30251971	30254863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30252958_30253686_30253810_30253893
51351	chr1	+	2087	10	NNC	ENSMUSG00000026156.9	novel	5655	4	NA	NA	83616	72960	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	129	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGAGCCTTCTCCCGA	NA	False	NA	NA	False	NA	NA	NA	23884707	23961199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_23885645_23887344_23887655_23888386_23888549_23892502_23892632_23898103_23898195_23905297_23905379_23915454_23915531_23916789_23916878_23930942_23931073_23961116
51352	chr9	-	1761	1	Antisense	novelGene_ENSMUSG00000111681.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAAGATACTTTGTATTG	NA	False	NA	NA	False	NA	NA	NA	37185094	37183333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_37183300_37185100
51353	chr10	-	1645	12	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	0	-13	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	51.2211216763663	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTCTAAAAATTATGTG	NA	False	NA	NA	False	NA	NA	NA	30476691	30410723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
51354	chr2	-	2153	3	ISM	ENSMUSG00000036281.14	ENSMUST00000149850.8	4459	24	14232	4	1370	-4	3prime_fragment	FALSE	canonical	3	55	junction_2	16	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTTAAAAAGCAATGTAT	NA	False	NA	NA	False	NA	NA	NA	26256412	26252791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_26253033_26253649_26253781_26254631
51355	chr1	-	670	2	Genic_Genomic	ENSMUSG00000084416.4	novel	654	1	NA	NA	-31	30	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_65033632_65033676
51356	chr10	+	2840	10	Antisense	novelGene_ENSMUSG00000042570.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGAAGATGAAAGGCATCA	NA	False	NA	NA	False	NA	NA	NA	79376496	79385687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_79377031_79377344_79377769_79378238_79378318_79378432_79378558_79380355_79380451_79380517_79380607_79380882_79381033_79383489_79383558_79384186_79385146_79385370
51357	chr4	+	3218	4	NNC	ENSMUSG00000097620.8	novel	2114	3	NA	NA	-2631	21627	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	96	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTCAGCGACCTCCTCA	NA	False	NA	NA	False	NA	NA	NA	140840339	140867025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140843175_140843846_140843952_140845837_140846093_140867002
51358	chr9	-	1989	1	Intergenic	novelGene_1090	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCATTGGCCTGCCATCT	5893	False	NA	NA	False	NA	NA	NA	62020962	62018973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_62019000_62021000
51359	chr2	+	1993	12	Intergenic	novelGene_2716	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTAGCAGCAGATGCCT	NA	False	NA	NA	False	NA	NA	NA	139675401	139899276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_139676368_139699621_139699698_139725692_139725801_139752450_139752563_139789075_139789155_139793378_139793499_139819525_139819633_139827047_139827129_139837992_139838077_139850617_139850739_139890160_139890228_139899204
51360	chr9	-	3241	17	Antisense	novelGene_ENSMUSG00000057193.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	134	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGACGGCGCCTTGACGG	NA	False	NA	NA	False	NA	NA	NA	21266246	21249208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21249255_21249732_21249787_21253083_21253147_21253232_21253320_21253478_21253559_21253686_21253802_21253893_21253952_21254036_21254163_21254259_21254344_21254437_21254539_21256123_21256220_21259218_21259285_21259365_21259440_21259621_21259691_21259831_21259920_21263763_21263848_21264296
51361	chr4	-	2647	19	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	16	119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	119.545693521374	1	134	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGCAGATGGCTTGATGT	NA	False	NA	NA	False	NA	NA	NA	108975203	108918692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924168_108925612_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944735_108957117_108957148_108958312_108958361_108959693_108959790_108975091
51362	chr3	+	1364	9	NNC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	-20	69	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	714.735342189681	2	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTGTGTGTGAGTTGA	4981	False	NA	NA	False	NA	NA	NA	138148910	138161073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153705_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
51363	chr4	-	1854	9	NIC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	-2	-9	combination_of_known_junctions	FALSE	canonical	3	28	junction_7	133.008399640775	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACTTGAGAATCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	120682906	120614643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120647573_120647687_120682726
51364	chr3	+	1430	3	ISM	ENSMUSG00000004127.13	ENSMUST00000161791.2	4258	6	25	6334	-23	-992	intron_retention	FALSE	canonical	3	162	junction_1	9	6	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTTATGCAGAAAACCGC	NA	False	NA	NA	False	NA	NA	NA	137849254	137855245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_137849358_137853135_137853332_137854114
51365	chr2	-	915	5	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-50	-1023	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5393.95318852509	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAATTCTTTGAAGTCGA	3686	False	NA	NA	False	NA	NA	NA	154734801	154714360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715503_154729676_154729728_154730102_154730281_154734609
51366	chr12	-	1416	11	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	83.6035884397315	3	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCTTATGCAAGGGTTT	7673	False	NA	NA	False	NA	NA	NA	110807360	110774240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807260
51367	chr4	-	1685	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	79	1	79	-1	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	1	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTTTGTGTGTGTTT	78	False	NA	NA	False	NA	NA	NA	41098104	41092722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
51368	chr9	-	3180	1	FSM	ENSMUSG00000032299.11	ENSMUST00000213161.2	437	1	-2773	30	31	11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	126	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAGAAGAATAAACAAGTG	6362	False	NA	NA	False	NA	NA	NA	57065530	57062350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57062400_57065500
51369	chr2	-	2976	5	NIC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	6	-2	intron_retention	FALSE	canonical	2	7	junction_2	34.3611335668659	23	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTCAGTCTGCCTTTTA	8333	False	NA	NA	False	NA	NA	NA	158203456	158197706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_158197962_158199117_158199184_158200124_158202520_158202862_158202991_158203324
51370	chr1	+	1598	10	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	0	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	326.073952075633	3	42	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACGGTTTGTTCTATTCC	NA	False	NA	NA	False	NA	NA	NA	15875869	15913653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877961_15883264_15883347_15886116_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
51371	chr15	-	1091	7	NNC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	406.485922948822	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845054	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81842048_81842112_81844915
51373	chr6	+	2377	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	10	72	10	-72	multi-exon	FALSE	canonical	3	65	junction_1	9.07683253612673	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCTTCTGCTTCCTGGG	NA	False	NA	NA	False	NA	NA	NA	147377378	147534038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
51374	chr3	-	2189	5	NNC	ENSMUSG00000043300.3	novel	2028	3	NA	NA	88	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	21.2647007973308	33	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGTATAGTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	69506205	69481516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_69483294_69486658_69486725_69495275_69495391_69504945_69505106_69506134
51375	chr9	+	3366	9	NNC	ENSMUSG00000109032.2	novel	1137	9	NA	NA	1692	405	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	13.3135269556943	6	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCACTACTAGCTCCAGAAA	NA	False	NA	NA	False	NA	NA	NA	75377589	75392389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_75379554_75380085_75380262_75380603_75380689_75383697_75383793_75385260_75385396_75386953_75387087_75388729_75388947_75390380_75390484_75391931
51376	chr1	+	2227	9	NNC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	-27	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	176.453561525405	1	102	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTCAAGGAATCATTGT	8158	False	NA	NA	False	NA	NA	NA	134333705	134339465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134333792_134334047_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
51377	chr11	+	1165	1	Antisense	novelGene_ENSMUSG00000034993.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	149	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGACCCCCCCTGTCCC	1558	False	NA	NA	False	NA	NA	NA	101349573	101350738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_101349600_101350700
51378	chr3	-	3795	9	NNC	ENSMUSG00000027864.10	novel	5902	9	NA	NA	-1774	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.7712895815366	17	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAATCAGACTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	100987811	100947554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100948013_100949924_100950839_100952759_100953066_100957405_100957514_100963551_100963972_100967952_100968379_100980125_100980507_100984358_100984773_100987443
51380	chr5	-	2688	7	Antisense	novelGene_ENSMUSG00000029729.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCGACATAGGCCCTCCC	NA	False	NA	NA	False	NA	NA	NA	138100436	138083412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_138083493_138091180_138091692_138092250_138092400_138094043_138094180_138095320_138095418_138095711_138095841_138098850
51381	chr12	-	1152	7	NNC	ENSMUSG00000021124.14	novel	1490	6	NA	NA	-9	71	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	332.795566209781	1630	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGTATAACATTAAT	NA	False	NA	NA	False	NA	NA	NA	79219231	79203031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79214085_79214199_79218993
51382	chrX	+	1979	21	Antisense	novelGene_ENSMUSG00000025665.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGCACCAGCATGCATCC	NA	False	NA	NA	False	NA	NA	NA	110308368	110372661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_110308392_110309899_110309980_110314372_110314535_110317150_110317310_110318339_110318432_110319029_110319155_110319548_110319678_110320231_110320335_110322401_110322460_110323233_110323324_110323534_110323606_110326794_110326940_110330610_110330649_110331367_110331472_110342308_110342391_110344013_110344095_110344883_110344964_110348847_110348967_110355927_110355986_110359986_110360052_110372546
51383	chr2	+	2799	9	ISM	ENSMUSG00000036053.18	ENSMUST00000127122.9	5508	27	260351	5	260343	-5	3prime_fragment	FALSE	canonical	0	0	junction_2	4.09267638593623	74	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTCGGTCATATGTTC	NA	False	NA	NA	False	NA	NA	NA	53008222	53023811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_53008268_53008375_53008457_53009971_53010102_53012499_53012664_53013483_53013586_53016024_53016124_53016864_53016989_53020423_53020518_53021851
51384	chr4	-	3306	20	ISM	ENSMUSG00000020220.17	ENSMUST00000185113.2	10176	52	73732	207	-9152	123	3prime_fragment	FALSE	canonical	3	12	junction_15	9.40236311429015	30	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGAGCAGGGCTGTGC	NA	False	NA	NA	False	NA	NA	NA	144808324	144701372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_144701839_144703097_144703339_144709887_144710020_144743304_144743501_144746706_144746840_144771530_144771699_144772840_144772976_144780686_144780836_144783039_144783137_144783982_144784133_144789074_144789225_144790133_144790251_144792355_144792536_144795647_144795757_144796514_144796679_144798955_144799065_144801405_144801642_144802279_144802404_144807870_144808047_144808250
51386	chr2	-	2577	6	NNC	ENSMUSG00000074994.7	novel	8973	12	NA	NA	29994	-14282	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	24.838679514016	35	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATCATCCTTCTAGTGG	NA	False	NA	NA	False	NA	NA	NA	104617047	104599421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_104601021_104606516_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864
51388	chr17	-	3139	1	Intergenic	novelGene_164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGACGCTTACACCTTA	NA	False	NA	NA	False	NA	NA	NA	38310325	38307186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_38307200_38310300
51390	chr10	-	1683	6	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	180	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	312.210441849724	2	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTAGAGGTGTAATGATG	NA	False	NA	NA	False	NA	NA	NA	5755420	5749172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752048_5752111_5752533_5755258
51391	chr17	+	1763	3	Antisense	novelGene_ENSMUSG00000092687.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAAGAGACCCGTGTGC	NA	False	NA	NA	False	NA	NA	NA	35169239	35171434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35169451_35169672_35170901_35171110
51392	chr4	+	1707	2	Antisense	novelGene_ENSMUSG00000048232.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGGTCCGTGGCACTAG	NA	False	NA	NA	False	NA	NA	NA	45038213	45040125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_45038716_45038920
51393	chr4	-	1440	9	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	10	-48	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	1042.82857531811	4	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGGTGTAGACTATTAAGC	8873	False	43031431	NA	False	NA	NA	NA	43031426	43027737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030239_43030299_43030435_43030536_43030970_43031109_43031328
51394	chr6	-	1661	12	NNC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	-44087	-43	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	867.704333236475	3	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTCTCTGTCCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	124986588	124935418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124943600_124943719_124944866_124944985_124958964_124959062_124961280_124961400_124986527
51397	chr13	+	3631	8	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	-1394	-4410	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	197.611967744665	5	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGCCTGGCTTACTTGAC	NA	False	NA	NA	False	NA	NA	NA	19027638	19046571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19043649
51399	chr19	+	2183	1	Genic_Genomic	ENSMUSG00000024983.11	novel	NA	NA	NA	NA	65196	1413	mono-exon	FALSE	NA	NA	NA	NA	NA	15	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTTGTGAACTCAGAAC	9394	False	NA	NA	False	NA	NA	NA	55434641	55436824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_55434600_55436800
51401	chr4	+	980	6	NNC	ENSMUSG00000028936.16	novel	2051	4	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2792.68828192478	10	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGTCACTGTGCAAGG	NA	False	NA	NA	False	NA	NA	NA	152410327	152418524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152410353_152410827_152410966_152411937_152412043_152414460_152414586_152416736_152417067_152418267
51402	chr5	+	1597	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	275	16	-11	-16	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	115	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACCCTTCTTTCAAGTCT	5827	False	NA	NA	False	NA	NA	NA	31855302	32242290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
51403	chr11	-	1683	14	NNC	ENSMUSG00000064090.15	novel	1642	12	NA	NA	77487	84144	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	985	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGACGGGGCGGAAACC	NA	False	NA	NA	False	NA	NA	NA	26421878	26337177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_26337309_26347743_26347803_26349646_26349708_26353319_26353377_26357545_26357647_26372405_26372503_26384429_26384499_26409683_26409835_26418332_26418417_26418669_26418717_26418799_26418883_26419651_26419767_26420874_26420946_26421321
51404	chr10	-	2332	10	NNC	ENSMUSG00000055531.13	novel	3819	9	NA	NA	-13	699	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	286.691859358131	1	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCCTTTTGAAAAAGAAAAA	4502	False	NA	NA	False	NA	NA	NA	117212847	117190731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117191758_117191839_117192033_117194897_117195052_117196350_117196461_117196760_117196999_117198045_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
51405	chrX	+	1813	6	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	8302	2	-1793	-2	3prime_fragment	FALSE	canonical	3	2464	junction_5	150.861525910353	3	97	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	74147761	74153381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
51406	chr1	+	1418	14	Antisense	novelGene_ENSMUSG00000026019.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	46	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGAACTGGGCGACGGT	117	False	NA	NA	False	NA	NA	NA	60117351	60137343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_60117403_60119678_60119751_60121195_60121329_60121449_60121559_60121670_60121809_60122913_60123000_60124869_60124915_60126204_60126361_60127201_60127306_60128425_60128517_60130177_60130275_60133592_60133688_60136666_60136859_60137294
51407	chr8	+	2612	6	FSM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	271	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	43.0748186299142	274	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	4017	False	NA	NA	False	NA	NA	NA	105897576	105944621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
51408	chr4	-	1274	4	ISM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	25531	7	25430	-7	3prime_fragment	FALSE	canonical	3	463	junction_2	12.0277457017791	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGAATGAGGCCAACATT	NA	False	NA	NA	False	NA	NA	NA	143000603	142994007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469
51409	chr12	-	1489	10	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1829	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_8	78.692086288549	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9501	False	NA	NA	False	NA	NA	NA	110805532	110774231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
51410	chr15	+	2516	14	FSM	ENSMUSG00000033088.20	ENSMUST00000109687.9	2570	14	47	7	11	-5	multi-exon	FALSE	canonical	3	125	junction_8	26.3687999246734	84	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCAACTCTGGCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	78867287	78890057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
51411	chr13	-	2469	15	NNC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	13	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	49.3947035085127	339	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGAAATCTTATTTCAAT	NA	False	NA	NA	False	NA	NA	NA	55248095	55176109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223808_55224114_55224189_55225215_55225341_55233422_55233508_55240939_55241095_55248009
51412	chr8	+	1885	10	FSM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	101	7	47	-7	multi-exon	FALSE	canonical	0	0	junction_3	369.398142461925	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTATCTCTGATCTGGT	NA	False	NA	NA	False	NA	NA	NA	106024395	106031995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064_106031110_106031204
51413	chr2	-	3009	20	FSM	ENSMUSG00000050211.15	ENSMUST00000090071.5	4477	20	109	1359	109	-1359	multi-exon	FALSE	canonical	0	0	junction_19	6.9306017774238	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTCACACACAGCTGTC	NA	False	NA	NA	False	NA	NA	NA	120075707	119998251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_119998532_119998952_119999137_120000509_120000677_120001588_120001793_120002198_120002307_120004133_120004272_120004733_120004849_120007202_120007426_120011897_120012035_120013184_120013321_120015051_120015090_120015480_120015568_120015669_120015831_120016827_120016892_120017676_120017720_120018990_120019032_120019884_120020017_120021674_120021812_120030693_120030767_120075166
51415	chr4	+	2058	3	ISM	ENSMUSG00000029034.10	ENSMUST00000134678.8	2197	14	16903	-167	-1330	133	intron_retention	FALSE	canonical	3	894	junction_1	45	1	71	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTCTTTTATTCCTACT	8347	False	NA	NA	False	NA	NA	NA	155970905	155973323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_155971445_155971572_155971657_155971888
51416	chr1	-	2261	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	154	27	-28	1	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGGGTGTAGTAGTTT	NA	False	NA	-69	True	NA	NA	NA	53391757	53383802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
51418	chr17	-	2031	1	NIC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	10022	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	75	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGACATTTGTGTTCATT	NA	False	NA	NA	False	NA	NA	NA	32524682	32522651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32522700_32524700
51419	chr14	-	1461	6	ISM	ENSMUSG00000006289.15	ENSMUST00000160890.8	1812	9	6757	2	-741	-2	3prime_fragment	FALSE	canonical	3	624	junction_4	15.8113883008419	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAATTAGGTTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	51155572	51153144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154961_51155292
51420	chr6	-	1326	7	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	-2	-125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	699.242546537958	2	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTTGTGGGTTGTCATA	NA	False	NA	NA	False	NA	NA	NA	124791119	124787679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789867_124790970
51421	chr8	+	1347	2	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	64588	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGAGGCTCACTTGA	NA	False	NA	NA	False	NA	NA	NA	107395362	107396874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107395720_107395884
51423	chr4	-	1683	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	966.521101683766	2	81	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	28	False	NA	NA	False	NA	NA	NA	41098154	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093789_41094000_41094265_41094336_41094696_41094839_41095144_41095272_41098001
51424	chr5	-	1947	8	Antisense	novelGene_ENSMUSG00000005514.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATGAAATCCTCTTCCA	NA	False	NA	NA	False	NA	NA	NA	135764176	135759968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_135760038_135760415_135760516_135761336_135761658_135762354_135762544_135762630_135762772_135762873_135763152_135763235_135763381_135763472
51425	chr15	-	414	1	Antisense	novelGene_ENSMUSG00000022201.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	12122504	12122090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12122100_12122500
51427	chr1	+	2071	8	Antisense	novelGene_ENSMUSG00000025950.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	98	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCTAATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65197809	65214526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_65198718_65200211_65200371_65200956_65201098_65204256_65204404_65205257_65205446_65207658_65207766_65210118_65210406_65214392
51428	chr4	-	1016	8	NNC	ENSMUSG00000028964.15	novel	908	7	NA	NA	14	6	intron_retention	FALSE	canonical	3	96	junction_2	2436.39795181162	69	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTACCTTTGTGTCTGGG	NA	False	NA	NA	False	NA	NA	NA	150994311	150981595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_150981929_150985464_150985552_150987897_150988084_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
51429	chr17	-	1406	4	ISM	ENSMUSG00000024056.11	ENSMUST00000233552.2	1454	10	-280	11251	-280	1321	intron_retention	FALSE	canonical	3	311	junction_1	40.8765077873451	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGCTGAGAATTCCAAAG	NA	False	NA	NA	False	NA	NA	NA	71820383	71814348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_71814408_71815562_71815769_71818339_71818485_71819387
51430	chr17	+	2170	3	NIC	ENSMUSG00000024014.9	novel	1578	5	NA	NA	253	0	intron_retention	FALSE	canonical	3	1677	junction_1	101	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGAGTTTTCCATT	NA	False	NA	NA	False	NA	NA	NA	29710531	29715082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29711006_29712695_29712873_29713563
51431	chr19	+	1565	1	NIC	ENSMUSG00000038274.14	novel	613	5	NA	NA	1	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	32	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1093	False	NA	NA	False	NA	NA	NA	6107984	6109549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6108000_6109500
51432	chr1	+	1699	2	FSM	ENSMUSG00000098923.2	ENSMUST00000183607.2	681	2	-21	-997	-8	-757	multi-exon	FALSE	canonical	2	5	junction_1	0	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTGTGAAGATATGT	NA	False	NA	NA	False	NA	NA	NA	119453881	119455956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_119454278_119454653
51433	chr1	+	1674	7	NIC	ENSMUSG00000026333.15	novel	2046	8	NA	NA	-2	-203	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	19.5675468285856	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCATGCGTAGAATTCAGA	NA	False	NA	NA	False	NA	NA	NA	97697919	97720491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_97697981_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
51434	chr9	+	1449	7	NNC	ENSMUSG00000032478.15	novel	719	7	NA	NA	17	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	221.058564387107	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCGAATGCTCCAGGCT	NA	False	NA	NA	False	NA	NA	NA	109661891	109672015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109661957_109662263_109662751_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
51435	chr16	-	2718	10	NNC	ENSMUSG00000022948.17	novel	2408	12	NA	NA	12	0	intron_retention	FALSE	canonical	2	8	junction_4	39.6618422213979	12	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	NA	False	NA	NA	NA	93400667	93380344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386586_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
51436	chr7	+	1682	4	NNC	ENSMUSG00000038503.16	novel	489	4	NA	NA	-68	1092	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	621.56951877217	1	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTCCAGTGATAGGTAT	NA	False	NA	NA	False	NA	NA	NA	83541469	83548380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544737_83544971_83546957_83547334_83547521
51437	chrX	+	1141	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	34	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5942.52538909175	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCAGTTTTGTTCG	NA	False	NA	NA	False	NA	NA	NA	36059340	36062450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060935_36061388_36061530_36062043
51438	chr9	+	1187	10	NNC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-8	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	413.835984687439	11	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTGAAAATGAGCTGGTC	NA	False	NA	NA	False	NA	NA	NA	20914229	20920125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919413_20919519_20919789
51439	chr2	-	1063	9	FSM	ENSMUSG00000078919.11	ENSMUST00000109193.8	1076	9	13	0	13	0	multi-exon	FALSE	canonical	2	8	junction_8	149.583118616373	42	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	NA	False	NA	NA	NA	168072498	168052200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072308
51440	chr18	-	1590	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	13	1699	13	-1699	multi-exon	FALSE	canonical	3	1260	junction_1	0	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTGGTGCTAAGATC	NA	False	NA	NA	False	NA	NA	NA	37777244	37775242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
51443	chr13	+	2265	6	Antisense	novelGene_ENSMUSG00000021646.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACGTGCCATCGCAGAC	NA	False	NA	NA	False	NA	NA	NA	100123527	100152147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100125157_100126755_100126883_100127718_100127820_100130072_100130164_100136761_100136824_100151892
51444	chr9	+	1678	12	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	168	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	490.956176193098	2	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTAATGAGTTTGGGTTG	NA	False	NA	NA	False	NA	NA	NA	59446990	59472385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59461415_59461509_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59470153_59470334_59470506_59470598_59471165_59471271_59472103
51445	chr9	-	3094	9	NNC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	2	-409	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	258.177476505988	1	115	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCAGACTGTTGGTCATT	NA	False	NA	NA	False	NA	NA	NA	75466937	75405397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75407433_75412121_75412261_75416591_75416704_75418415_75418527_75422448_75422539_75423754_75423878_75436650_75436808_75439703_75439875_75466781
51446	chr1	-	986	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	21	0	-16	0	multi-exon	FALSE	canonical	3	257	junction_6	130.826539101718	2599	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	7304	False	NA	NA	False	NA	NA	NA	171122576	171116135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
51448	chr12	+	1490	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110352.10	1491	8	5	-4	3	0	multi-exon	FALSE	canonical	3	307	junction_1	564.545762863691	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTGTTTCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	80992310	80997281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
51450	chr19	+	2309	3	NNC	ENSMUSG00000024976.15	novel	632	5	NA	NA	26381	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	188.5	1	117	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTACCTAGAGCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	54017897	54021553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_54018038_54018291_54018424_54019516
51451	chr8	-	1336	5	NNC	ENSMUSG00000031708.18	novel	1334	12	NA	NA	-257	1	intron_retention	FALSE	canonical	0	0	junction_3	1693.87446037184	22	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAACTGACTGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	84300139	84298332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298688_84298860_84298950_84299026_84299248_84299392_84299773_84299848
51452	chr12	-	3266	10	NNC	ENSMUSG00000021238.12	novel	3471	12	NA	NA	6207	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	74.0810367098085	1	143	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGCCTTAGGAAAAATA	NA	False	NA	NA	False	NA	NA	NA	84488884	84477524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483684_84484770_84484871_84486186_84486632_84487008_84487088_84488536_84488699_84488844
51453	chr4	+	1553	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	794.986041107362	9	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2952	False	NA	NA	False	NA	NA	NA	128887099	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887167_128893008_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
51454	chr9	+	4048	24	NIC	ENSMUSG00000034593.17	novel	6372	41	NA	NA	-20068	-4	combination_of_known_junctions	FALSE	canonical	3	40	junction_2	13.0560808682028	1	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAACTGGCCAAGTAACT	-10	True	NA	NA	False	NA	NA	NA	75071397	75125762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233_75081483_75083799_75083894_75087305_75087455_75089180_75089295_75091559_75091704_75091919_75091974_75093176_75093405_75097181_75097283_75099665_75099747_75101220_75101420_75104924_75105019_75108553_75108701_75110989_75111145_75116495_75116586_75118299_75118451_75120073_75120357_75122366_75122542_75124780_75124862_75125122
51456	chr15	-	1260	3	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	385	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	861.5	152	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAATCCCGACCCTGCCAG	NA	False	NA	NA	False	NA	NA	NA	83056408	83037706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038760_83050296_83050408_83056312
51457	chr5	+	1406	4	NIC	ENSMUSG00000040532.15	novel	1473	5	NA	NA	-19	0	intron_retention	FALSE	canonical	3	552	junction_2	38.6637929966641	1633	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	NA	False	NA	NA	NA	135038525	135041024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135038972_135039740_135040235_135040337_135040520_135040740
51458	chr11	+	1825	7	NNC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	179.477637108979	1512	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGTGTGGTCCCATTT	9253	False	NA	NA	False	NA	NA	NA	62770292	62786012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62770422_62772762_62772846_62774400_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
51459	chr10	-	1278	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2085.75730875392	3	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959829	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954069_90954560_90954724_90955388_90955569_90957783_90957906_90959419_90959569_90959773
51461	chr1	-	1772	1	ISM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	61733	13	40630	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	23	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTAACTGGATTTCCCT	NA	False	NA	NA	False	NA	NA	NA	58563749	58561977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_58562000_58563700
51462	chr14	+	1980	5	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-14070	-336	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	8.44097150806707	56	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	40986691	41010436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40987404_41001646_41001810_41002809_41002942_41003619_41003802_41009645
51463	chr9	+	1499	12	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	382	0	123	0	3prime_fragment	FALSE	canonical	3	5755	junction_2	199.673576594608	2	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108766082	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
51464	chr15	+	2104	8	NIC	ENSMUSG00000022553.17	novel	1686	8	NA	NA	3	0	intron_retention	FALSE	canonical	3	22	junction_1	226.506205708563	5	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	76235511	76238573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76235860_76236195_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
51466	chr11	+	2266	5	NNC	ENSMUSG00000020455.17	novel	2251	6	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	32.6525267016199	130	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTCTCTGCTTATCC	1674	False	NA	NA	False	NA	NA	NA	58868926	58882280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_58869471_58872066_58872163_58872818_58873050_58879628_58879756_58881012
51467	chr3	+	1655	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	3	-3	3	3	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	28	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGAGTTTGTGTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	108479017	108489388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
51468	chr13	-	1412	10	FSM	ENSMUSG00000021417.16	ENSMUST00000171229.8	1426	10	14	0	2	0	multi-exon	FALSE	canonical	3	71	junction_9	38.39206450927	366	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	NA	NA	NA	35178113	35161730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177996
51469	chr8	+	2599	5	FSM	ENSMUSG00000031533.5	ENSMUST00000211083.2	2625	5	-3	29	-3	-29	multi-exon	FALSE	canonical	3	683	junction_2	50.8551865594848	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACTTGAGGTCACTCTGG	NA	False	NA	NA	False	NA	NA	NA	22901410	22916183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362
51470	chr1	-	1318	3	Antisense	novelGene_ENSMUSG00000104217.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTGAGAGCAGTGTATA	NA	False	NA	NA	False	NA	NA	NA	4916260	4909645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_4909709_4911175_4911354_4915183
51471	SIRV10001	+	1490	2	Genic_Genomic	SIRV10001A	novel	9941	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	9941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV10001_+_502_8952
51472	chr11	+	867	8	ISM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	114	1965	114	-1374	5prime_fragment	FALSE	canonical	3	585	junction_7	62.1236423495557	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGCTACCCTGGATACA	1344	False	NA	NA	False	NA	NA	NA	101010877	101015280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248
51473	chr13	-	1116	5	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	107	at_least_one_novel_splicesite	FALSE	canonical	3	201	junction_4	428.198843996571	5831	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTATTTCTCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	100881584	100872355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037_100881130_100881238
51474	chr18	+	1566	11	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-171	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	374.462668366287	6	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	629	False	NA	NA	False	NA	NA	NA	84952735	84999598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84952757_84953153_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978214_84980709_84980846_84982233_84982321_84983555_84983711_84995491_84995617_84999246
51475	chr9	-	3963	14	Intergenic	novelGene_1152	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGTAGCCGGGCTATGGG	NA	False	NA	NA	False	NA	NA	NA	102965015	102885727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_102885913_102923881_102924020_102927340_102927503_102945020_102945252_102946343_102946442_102947425_102947562_102949755_102949834_102950346_102950511_102951570_102951762_102954119_102954289_102956647_102956811_102959526_102959592_102962015_102962139_102962955
51476	chrX	+	2325	8	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGTCCCGAAGCCAGGGTG	NA	False	NA	NA	False	NA	NA	NA	49696194	49724142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49697487_49697565_49697696_49701583_49701727_49704236_49704393_49715313_49715387_49716083_49716187_49719767_49719877_49723823
51477	chr7	-	3010	15	NIC	ENSMUSG00000025507.14	novel	3357	16	NA	NA	-3	17	intron_retention	FALSE	canonical	3	7	junction_10	17.9768842502515	2	99	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCATACAAAAACCCACTCA	NA	False	NA	NA	False	NA	NA	NA	141023924	141018410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141021015_141021085_141021230_141021387_141021443_141021524_141021735_141022063_141022478_141022880_141023267_141023881
51478	chr3	-	1974	7	NNC	ENSMUSG00000027506.16	novel	3081	7	NA	NA	-7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1236.9164280581	3	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGGTTTCAATATTTAT	NA	False	NA	NA	False	NA	NA	NA	9069506	8994656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8994966_8995020_8996235_9000058_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
51479	chr19	+	2658	13	NNC	ENSMUSG00000024759.15	novel	4368	13	NA	NA	38	762	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	13.5082279453014	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATTGTAGTTTGAATG	NA	False	NA	NA	False	NA	NA	NA	7471840	7512327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_7472027_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509414_7509813_7511314
51480	chr17	+	1444	6	NNC	ENSMUSG00000046711.17	novel	600	5	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2193.80175950335	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACAGTCTCTGGTGTAA	NA	False	NA	NA	False	NA	NA	NA	27775624	27782638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780486_27781414_27781850_27782034
51482	chr8	+	1842	15	FSM	ENSMUSG00000031901.13	ENSMUST00000119736.8	1837	15	-24	19	-24	2	multi-exon	TRUE	canonical	3	13	junction_4	52.5452186216786	520	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACCTGCTTCAACCTTA	NA	False	NA	NA	False	NA	NA	NA	106738114	106780453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
51483	chr5	-	995	8	NIC	ENSMUSG00000025747.13	novel	3884	8	NA	NA	25	67	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	824.746516407636	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCTTTCAGTGATGCTA	NA	False	NA	NA	False	NA	NA	NA	30278495	30265994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30274831_30274954_30276631_30276706_30278358
51484	chr6	+	2036	3	FSM	ENSMUSG00000030264.15	ENSMUST00000145054.8	558	3	15	-1493	-15	-2	multi-exon	FALSE	canonical	3	600	junction_1	91.5	22	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTTTTTGTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	113023302	113027996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113023352_113024375_113024666_113026299
51485	chr2	+	1464	2	Intergenic	novelGene_2804	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	1	58	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAAGGGGAAATGAGGAA	NA	False	NA	NA	False	NA	NA	NA	168847982	168849952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168848074_168848579
51486	chr10	+	1172	1	FSM	ENSMUSG00000090610.4	ENSMUST00000170703.4	1060	1	-49	-63	-49	63	mono-exon	FALSE	NA	NA	NA	NA	NA	190	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAAGTCAGACAG	NA	False	NA	NA	False	NA	NA	NA	93614472	93615644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93614500_93615600
51487	chrX	-	2575	2	Antisense	novelGene_ENSMUSG00000067771.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCTTGGAGTCCTGGCC	NA	False	NA	NA	False	NA	NA	NA	72172872	72168462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72168588_72170422
51488	chr11	-	2021	7	NIC	ENSMUSG00000020766.5	novel	1406	8	NA	NA	30	-77	intron_retention	FALSE	canonical	3	761	junction_3	60.2091262923561	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTCTTAATGGCGGTAGC	NA	False	NA	NA	False	NA	NA	NA	115903515	115899359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115899541_115899628_115899792_115899873_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
51489	chr4	+	2422	6	FSM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	37	-2	37	2	multi-exon	FALSE	canonical	3	30	junction_2	2.13541565040626	68	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGCCTTTGTTTGTCAG	NA	False	NA	NA	False	NA	NA	NA	149188639	149205106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202381_149203535
51490	chrX	+	1454	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	-14	2	combination_of_known_splicesites	FALSE	canonical	3	32	junction_6	81.4048524352203	277	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTTTTTTATATGGG	NA	False	NA	NA	False	NA	NA	NA	163052528	163156009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163141143_163141227_163152041_163152109_163155448
51492	chr7	-	1791	7	NIC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	-3	-13	intron_retention	FALSE	canonical	3	513	junction_4	61.5406369807788	3	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTATTTTGTACTTTCG	NA	False	NA	NA	False	NA	NA	NA	27010087	27004579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008840_27009605_27009678_27009945
51493	chr14	+	1388	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	209	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1082.36623499935	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATACACACGTGTTTCT	6800	False	NA	NA	False	NA	NA	NA	76742178	76745196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76744845_76744948
51494	chr17	-	1674	9	Antisense	novelGene_ENSMUSG00000089764.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCGGGGAATGCTGGGA	9870	False	NA	NA	False	NA	NA	NA	26499694	26471895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_26472065_26472946_26473018_26474003_26474098_26476897_26476999_26485256_26485381_26486259_26486331_26494645_26494824_26496518_26496622_26498931
51496	chr9	-	1387	7	NNC	ENSMUSG00000032040.16	novel	1445	7	NA	NA	18	-4	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	302.376375105963	1706	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGACTGATGGTGTAG	NA	False	NA	NA	False	NA	NA	NA	35087337	35035711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35036141_35037206_35037348_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
51497	chr17	+	2026	4	ISM	ENSMUSG00000062638.12	ENSMUST00000080254.7	2113	10	5073	-1148	4319	1148	3prime_fragment	FALSE	canonical	2	4	junction_1	3.29983164553722	33	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCTCAAACTCAGAGATC	2732	False	NA	NA	False	NA	NA	NA	34601178	34606150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34601242_34601435_34601463_34603334_34603362_34604241
51498	chr17	+	353	1	Intergenic	novelGene_138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTCATTTGTTTTATA	1636	False	NA	NA	False	NA	NA	NA	34607555	34607908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_34607600_34607900
51499	chr8	+	3413	2	Antisense	novelGene_ENSMUSG00000031708.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	52	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCACACACACTCGGGGAG	NA	False	NA	NA	False	NA	NA	NA	84317503	84321054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_84317700_84317837
51502	chr6	-	1576	7	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-1820	-1584	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGGCCCCTGGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	83034074	83031711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83031812_83031889_83032027_83032106_83032670_83032876_83032951_83033046_83033125_83033350_83033856_83033955
51503	chr2	-	2287	11	NNC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	-2	-6	intron_retention	FALSE	canonical	0	0	junction_10	154.168868452746	2	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGAATGAGCTCTCTAG	NA	False	NA	NA	False	NA	NA	NA	30068443	30063490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066015_30066373_30066505_30066626_30066677_30066750_30067495_30067604_30067734_30067931_30067978_30068397
51504	chr15	+	1648	2	Antisense	novelGene_ENSMUSG00000022358.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTTCTTGCCTTTATAG	NA	False	NA	NA	False	NA	NA	NA	58024830	58044583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_58025072_58043176
51505	chr10	-	1384	7	NIC	ENSMUSG00000019795.18	novel	2757	8	NA	NA	35	-813	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	278.754023389001	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCATTGGTGGCCTTTGA	NA	False	NA	NA	False	NA	NA	NA	7538990	7505957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_7506741_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
51506	chrX	-	1638	2	ISM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	485	0	485	0	intron_retention	FALSE	canonical	3	2198	junction_1	0	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	20483373	20481564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_20481782_20481952
51508	chr10	+	2049	2	FSM	ENSMUSG00000074781.6	ENSMUST00000219381.2	699	2	-168	-1182	-156	-2	multi-exon	FALSE	canonical	3	2257	junction_1	0	45	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGCCTTTGTACAGT	NA	False	NA	NA	False	NA	NA	NA	95350850	95378866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_95351100_95377066
51509	chr5	+	2302	2	Intergenic	novelGene_864	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	60	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATCAATCAATCAATCAAT	6117	False	NA	NA	False	NA	NA	NA	135096040	135098487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_135097518_135097662
51510	chr3	+	3332	5	ISM	ENSMUSG00000034640.10	ENSMUST00000047906.10	4191	6	3073	377	3023	-377	3prime_fragment	FALSE	canonical	3	103	junction_4	10.9857862713599	61	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTCTGTTTTGTTCTAT	NA	False	NA	NA	False	NA	NA	NA	65438903	65462562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_65439606_65453627_65453797_65454945_65455107_65459956_65460233_65460538
51511	chrX	+	1788	8	FSM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	-58	3	-58	-3	multi-exon	FALSE	canonical	3	58	junction_5	9.20736173961258	335	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATGTTGTGGTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	10351338	10462841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735_10451892_10456374_10456459_10461517_10461594_10461868
51512	chr3	+	2243	3	Intergenic	novelGene_3120	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	5.5	174	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGCTTTGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	51509211	51534600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_51509432_51532025_51532159_51532710
51514	chrX	+	1831	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	972.412233068058	1	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCAGTTTTGGGTGTACT	NA	False	NA	NA	False	NA	NA	NA	139357371	139376883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372747_139372920_139374527_139374688_139375917_139376147_139376262
51515	chr19	-	2671	5	FSM	ENSMUSG00000059363.11	ENSMUST00000123684.2	1072	5	-5	-1594	-5	1546	multi-exon	FALSE	canonical	2	9	junction_2	173.887894920837	503	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACATGCCTATGGGTGTC	NA	False	NA	NA	False	NA	NA	NA	24257937	24237270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_24239418_24244665_24244764_24249667_24249832_24254544_24254640_24257770
51516	chr8	-	2122	14	NNC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	507.905957376424	1	107	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCAGTCATGCATGCT	7652	False	NA	NA	False	NA	NA	NA	41827659	41793698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799232_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807104_41807870_41807955_41813289_41813337_41827546
51517	chr16	+	1425	1	Antisense	novelGene_ENSMUSG00000005732.15_AS_novelGene_ENSMUSG00000116925.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTGGTTGGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	18063806	18065231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_18063800_18065200
51518	chr14	-	2007	8	Intergenic	novelGene_525	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAGTCTGAAAGGGAAGA	NA	False	NA	NA	False	NA	NA	NA	20744918	20740778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_20740787_20741554_20741650_20741769_20741923_20742088_20742171_20742410_20742591_20742783_20742976_20743204_20743300_20743716
51520	chr10	+	3243	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	-20	9	-20	-9	multi-exon	FALSE	canonical	3	50	junction_2	27	74	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGTTAGCATATAGAGAGT	735	False	NA	NA	False	NA	NA	NA	90918898	90934510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_90919159_90929000_90929119_90931645
51521	chr6	+	1814	5	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGCGTCCACCTCAGGG	8	False	NA	NA	False	NA	NA	NA	122308967	122316588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122310400_122311028_122311112_122311933_122312042_122313815_122313974_122316555
51523	chr4	-	2180	7	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	-2	-1	intron_retention	FALSE	canonical	3	105	junction_6	10.8883219807074	163	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAACTTCATTCTTTGGT	2029	False	NA	NA	False	NA	NA	NA	116664747	116661209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116662253_116662328_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
51524	chr9	+	2119	10	ISM	ENSMUSG00000032411.16	ENSMUST00000179416.8	2408	11	15116	234	-14499	-28	3prime_fragment	FALSE	canonical	3	213	junction_2	81.9856958315757	64	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTCACTACTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	96155910	96200903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
51525	chr1	+	1538	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	-17	59	-17	-58	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACCCATTAGAAGGTGAT	-1	True	NA	NA	False	NA	NA	NA	180731840	180735594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
51526	chr6	-	5059	1	Intergenic	novelGene_4116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATCCCAAACTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	6078697	6073638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_6073600_6078700
51527	chr5	+	3864	15	ISM	ENSMUSG00000029647.16	ENSMUST00000176596.8	4152	18	49814	21	-14399	-13	3prime_fragment	FALSE	canonical	3	14	junction_1	33.1548623577174	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAGAATTGCAGAAATAA	576	False	NA	NA	False	NA	NA	NA	147439912	147485285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_147440013_147456314_147456563_147458639_147458745_147459985_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473210_147473351_147476052_147476183_147476551_147476617_147479879_147480019_147482415_147482546_147483174
51529	chr5	+	3188	1	Intergenic	novelGene_810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTCCCCAGTGCTGGGA	NA	False	NA	NA	False	NA	NA	NA	110613857	110617045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110613900_110617000
51530	chr5	+	1837	7	FSM	ENSMUSG00000029344.16	ENSMUST00000031287.12	1835	7	-7	5	-7	1	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	296	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	112424549	112463222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
51531	chr17	+	1505	13	NNC	ENSMUSG00000055817.19	novel	1723	14	NA	NA	26	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	322.040111373309	6	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84013645	84100306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063110_84074004_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
51532	chr11	-	633	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	378	1	-98	-1	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCAGTGTTCAGTACTC	NA	False	NA	NA	False	NA	NA	NA	93846707	93840640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
51533	chr18	-	1014	8	NNC	ENSMUSG00000024583.4	novel	4343	8	NA	NA	-4090	-14	at_least_one_novel_splicesite	FALSE	canonical	1	49	junction_7	305.210666622922	6	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACTTTTGCCAAGCTTAA	NA	False	NA	NA	False	NA	NA	NA	63829598	63797190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63829539
51534	chr4	+	2945	20	Antisense	novelGene_ENSMUSG00000028678.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	158	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACAACGTCACCAGTGCGA	NA	False	NA	NA	False	NA	NA	NA	117016858	117039810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_117017580_117019205_117019314_117019413_117019516_117019799_117019868_117022338_117022452_117022556_117022762_117023514_117023654_117024083_117024170_117024246_117024310_117024490_117024599_117027053_117027197_117028866_117029014_117029486_117029575_117030789_117030918_117032081_117032198_117035117_117035162_117035333_117035447_117035604_117035791_117037781_117037868_117039629
51535	chr10	+	1336	1	ISM	ENSMUSG00000003226.8	ENSMUST00000219332.2	2609	6	10697	47	10422	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCCCAAACTGGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	58293438	58294774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_58293400_58294800
51536	chr8	+	3528	21	Fusion	ENSMUSG00000110428.2_ENSMUSG00000031787.9	novel	3777	20	NA	NA	3668	8768	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	59	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAGCTGGAAGCAAGCAC	1142	False	NA	NA	False	NA	NA	NA	95826532	95870263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_95827092_95828030_95828148_95828641_95828771_95828966_95829204_95829289_95829419_95830036_95830159_95830516_95830656_95832349_95832450_95833087_95833272_95834050_95834164_95834982_95835117_95835204_95835351_95835809_95835984_95836411_95836654_95836759_95836904_95837324_95837390_95853155_95853334_95855821_95855963_95861344_95861491_95864545_95864754_95870142
51537	chr14	+	1338	6	FSM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	204	1400	0	1118	multi-exon	FALSE	canonical	3	117	junction_1	38.2015706483385	566	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTGTGTGGTTCGGTA	9234	False	NA	NA	False	NA	NA	NA	51181962	51189469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860
51540	chr17	-	1010	6	FSM	ENSMUSG00000024436.17	ENSMUST00000174349.8	488	6	-56	-466	-4	1	multi-exon	FALSE	canonical	3	24	junction_2	528.957313967772	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTCTTGACTCCCTTTG	4292	False	NA	NA	False	NA	NA	NA	36227285	36221276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36221849_36222310_36222371_36225225_36225295_36225383_36225482_36225587_36225697_36227183
51541	chr4	-	1763	2	ISM	ENSMUSG00000073771.12	ENSMUST00000153924.8	1956	4	1013	0	-52	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	129	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAATGTCAGCATTCAA	NA	False	NA	NA	False	NA	NA	NA	116978514	116976415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116978059_116978394
51542	chrX	-	1562	9	NNC	ENSMUSG00000058147.2	novel	1584	9	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	545.730230402348	1	56	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	NA	False	NA	NA	NA	72308992	72298146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72299014_72299124_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
51543	chr4	-	2346	11	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	-6	-1	intron_retention	FALSE	canonical	3	16	junction_7	13.8506317545446	215	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTCAGTGTCTGTTCCT	8663	False	NA	NA	False	NA	NA	NA	152112134	152104233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106692_152107152_152107265_152110234_152110477_152110844_152111517_152111999
51544	chrX	-	1180	11	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	47	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	628.101974204826	1	36	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72830456	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72824123_72824312_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830418
51545	chr15	-	1344	5	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	39	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4701.41214822738	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAAAGAGTTTTGTTTC	197	False	NA	NA	False	NA	NA	NA	98832280	98829317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829737_98829957_98830444_98830572_98830722_98830853_98831077_98832213
51546	chr5	+	1566	4	NIC	ENSMUSG00000040532.15	novel	1473	5	NA	NA	7	-3	intron_retention	FALSE	canonical	3	573	junction_2	31.3297870333578	51	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCCTGGATCCGTTTTC	NA	False	NA	NA	False	NA	NA	NA	135038316	135041021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135038972_135039740_135039915_135040063_135040520_135040740
51548	chr12	-	1716	13	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	3550	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	429.877203073415	1	60	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAATTCTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	87515489	87496685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497158_87497672_87497740_87499351_87499470_87500627_87500716_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515383
51549	chr11	+	2116	13	NNC	ENSMUSG00000007850.17	novel	2126	13	NA	NA	-1	-42	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	150.110769285736	1	118	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTAAGTGAACCTTGTCAA	NA	False	NA	NA	False	NA	NA	NA	50268594	50277312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50268630_50269085_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50276603
51550	chr6	+	2453	5	NNC	ENSMUSG00000055403.14	novel	2620	4	NA	NA	69	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5.24404424085076	47	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTGTACAAAATTCTT	NA	False	NA	NA	False	NA	NA	NA	89073160	89087013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_89073217_89075553_89075616_89078495_89078565_89084649_89085540_89085637
51551	chr19	-	2409	1	NIC	ENSMUSG00000024978.12	novel	3304	23	NA	NA	29379	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	26	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTAATAAACCAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55058504	55056095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_55056100_55058500
51554	chr5	-	2150	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	24	9	4	-1	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	1	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAACTACCGTAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	32942966	32893653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
51556	chr11	+	1232	8	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	15918	-4688	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2441.14743846547	2	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTTCTTTTGACATGT	NA	False	NA	NA	False	NA	NA	NA	55376461	55390976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55386988_55390505
51557	chr13	-	1256	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	-10	0	7	0	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	1103	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGTGGCCATGATG	NA	False	NA	NA	False	NA	NA	NA	43324970	43305215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
51558	chr18	+	5223	2	NNC	ENSMUSG00000103144.2	novel	4692	4	NA	NA	-14	2877	intron_retention	FALSE	non_canonical	0	0	junction_1	0	19	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATCTGGTTATAATACT	NA	False	NA	NA	False	NA	NA	NA	37794831	37800969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_37798338_37799252
51559	chr9	-	2233	6	FSM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	7	2547	6	591	multi-exon	FALSE	canonical	3	174	junction_5	23.9198662203617	220	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTATTATCCACTTAAATG	NA	False	NA	NA	False	NA	NA	NA	42175545	42165437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
51560	chr3	-	1831	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	2	21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	824.492722830226	1	104	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCCCCAGACTTGAACC	NA	False	NA	NA	False	NA	NA	NA	108352512	108333906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341375_108341524_108343201_108343283_108344824_108344896_108352312
51561	chr3	+	1683	3	FSM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	-41	27	-41	-24	multi-exon	FALSE	canonical	3	21	junction_1	9.5	128	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTCAGATATTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	106629167	106643866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_106629423_106641673_106641956_106642720
51562	chr11	+	1904	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	53.6563688406117	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCACTTTGTGATTGAGTA	NA	False	NA	NA	False	NA	NA	NA	51154018	51172589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
51564	chrX	+	3355	5	FSM	ENSMUSG00000049047.12	ENSMUST00000081834.10	3327	5	4	-32	4	2	multi-exon	FALSE	canonical	2	7	junction_1	4.81534007106456	42	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTAGAGTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	133657347	133662206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133657480_133658012_133658092_133658480_133658543_133658825_133658896_133659194
51565	chr9	-	1669	9	FSM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	92	16	92	-16	multi-exon	FALSE	canonical	3	246	junction_1	364.681860496241	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAACACCAAAAACTTC	4917	False	NA	NA	False	NA	NA	NA	107512419	107491339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107491915_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
51566	chr7	-	1289	8	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7137.65130866461	1	83	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398261	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126398138
51567	chr14	-	2638	3	FSM	ENSMUSG00000021910.16	ENSMUST00000171735.2	1763	3	3	-878	2	-44	multi-exon	FALSE	canonical	3	1094	junction_1	67.5	34	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTCCAATCTCCACTGAA	9424	False	NA	NA	False	NA	NA	NA	30928655	30922944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30925367_30926398_30926483_30928523
51568	chr12	+	1301	9	Antisense	novelGene_ENSMUSG00000056458.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCCTCCACCTCCAGAGC	NA	False	NA	NA	False	NA	NA	NA	110774231	110805517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110774559_110774640_110774840_110776342_110776457_110778211_110778315_110779948_110780128_110781401_110781451_110781564_110781646_110800561_110800675_110805381
51569	chr1	+	4873	1	NIC	ENSMUSG00000034432.12	novel	2287	8	NA	NA	11	-2655	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCTTGACTCTTGAAGG	NA	False	NA	NA	False	NA	NA	NA	90531231	90536104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90531200_90536100
51570	chr11	+	660	2	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCAACAGCTGCCTCCTC	6753	False	NA	NA	False	NA	NA	NA	69807537	69808283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69808167_69808252
51572	chr5	+	840	2	ISM	ENSMUSG00000029381.17	ENSMUST00000172706.2	687	3	8367	-249	-4863	249	3prime_fragment	FALSE	canonical	3	100	junction_1	0	3	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTCCAGAGAACAGCCCC	NA	False	NA	NA	False	NA	NA	NA	93081632	93088563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_93081745_93087835
51573	chr14	+	1884	2	Genic_Genomic	ENSMUSG00000115684.2	novel	663	1	NA	NA	-140	1808	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	2553	False	NA	NA	False	NA	NA	NA	119515695	119518306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_119516548_119517274
51574	chr3	+	1697	3	FSM	ENSMUSG00000037661.15	ENSMUST00000166278.7	1689	3	-5	-3	-5	3	multi-exon	FALSE	canonical	3	44	junction_2	125	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTATTTGTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	30910093	30951344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30910207_30931383_30931482_30949858
51576	chr2	+	1128	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	1	-4725	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	216.128867808074	1543	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGATTATCTTCTGTTT	361	False	NA	NA	False	NA	NA	NA	112285342	112297782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_112285646_112289804_112289925_112293117_112293285_112295081_112295163_112297325
51577	chr4	-	2809	14	FSM	ENSMUSG00000028207.19	ENSMUST00000084915.11	2884	14	69	6	-7	-6	multi-exon	FALSE	canonical	0	0	junction_11	124.875606744325	62	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTCTCTAGATTGTCAT	-3	True	NA	NA	False	NA	NA	NA	9669093	9575272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
51579	chr2	+	1176	5	NNC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-5	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	2777.57092618712	3	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGGGCTTGGCTGCTTT	5797	False	NA	NA	False	NA	NA	NA	32851726	32854053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32852050_32852594_32852685_32852996_32853596_32853752_32853866_32854002
51580	chr2	-	2528	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103130.8	2636	11	91	17	12	-17	multi-exon	FALSE	canonical	3	12	junction_10	60.8885046622103	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACAAGTTTTGCCTAGTT	8146	False	NA	NA	False	NA	NA	NA	156848983	156837213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156848283_156848894
51581	chr4	-	1558	11	FSM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	3	5	1	0	multi-exon	FALSE	canonical	3	80	junction_10	49.3527101586124	276	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	NA	False	NA	NA	NA	117539467	117531882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
51585	chr15	+	700	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-22	-338	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	689	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTTTGACAGCTAAAGTG	4462	False	NA	NA	False	NA	NA	NA	80139701	80141404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140650_80141131
51586	chr9	+	1579	14	NNC	ENSMUSG00000003402.15	novel	2012	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	242.813001806233	18	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	21914313	21925518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919656_21922999_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
51587	chr4	+	3170	17	NNC	ENSMUSG00000000085.17	novel	3353	17	NA	NA	-2	-1	intron_retention	FALSE	canonical	0	0	junction_16	17.5316677757708	85	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCGTGTCTTTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	120262575	120387380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_120262654_120304229_120304359_120310440_120310504_120310948_120310973_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385500_120386444
51588	chr14	+	2790	15	NNC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	17	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	52.9348849136024	1	116	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAAACTGGCTCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	55798007	55807512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55798276_55798531_55798877_55800348_55800477_55800828_55800957_55801178_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
51589	chr18	+	827	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	188	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	48179714	48181455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180086_48180999
51591	chr10	+	727	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	170	62	170	12	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCCCTGGGCTCGAG	825	False	NA	NA	False	NA	NA	NA	79889491	79892211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
51593	chr12	-	1445	10	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-55	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	320.775025966721	78	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87519099	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497167_87503617_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
51594	chr6	-	1751	12	NNC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	137.910019772745	1	72	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTCACTCTGGGGACCT	7036	False	NA	NA	False	NA	NA	NA	88818810	88812912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818755
51595	chr8	-	920	5	NNC	ENSMUSG00000093904.3	novel	4902	5	NA	NA	0	433	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3033.94442104663	17	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAAATGTGCGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	127672594	127661302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_127661779_127663858_127663933_127666621_127666704_127667928_127667976_127672353
51597	chr17	-	2031	15	NNC	ENSMUSG00000024039.16	novel	2474	16	NA	NA	257	-30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	79.8251916658507	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGGACTCTTCCTATA	6203	False	NA	NA	False	NA	NA	NA	31851881	31831651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851806
51598	chr14	-	887	7	ISM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-43	5847	-23	1648	5prime_fragment	FALSE	canonical	3	4955	junction_2	264.1296504034	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGTGGGCCTGGGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	36857252	36847895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
51600	chr4	-	3335	9	ISM	ENSMUSG00000048232.13	ENSMUST00000052236.13	4635	11	26044	4	58	-3	3prime_fragment	FALSE	canonical	3	26	junction_8	4.89259644769523	23	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGTGCTTCTGGGGTCAT	NA	False	NA	NA	False	NA	NA	NA	45058560	45034250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_45036083_45040525_45040708_45041731_45042046_45043639_45043904_45044715_45044869_45046343_45046415_45048439_45048577_45051552_45051703_45058328
51602	chr3	+	2841	7	FSM	ENSMUSG00000027660.17	ENSMUST00000029194.12	6717	7	21	3855	17	-269	multi-exon	FALSE	canonical	0	0	junction_2	41.5668805126817	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTGTATGGCAGCAAA	NA	False	NA	NA	False	NA	NA	NA	31149230	31172871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_31149307_31150851_31152569_31165773_31165872_31167556_31167790_31170964_31171189_31171521_31171747_31172603
51603	chrX	+	1242	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	-2	0	-2	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	2	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059301	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
51604	chr15	-	1478	8	FSM	ENSMUSG00000023755.11	ENSMUST00000147015.2	1038	8	-177	-263	9	-5	multi-exon	FALSE	canonical	3	19	junction_7	64.8753907620649	52	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACGTTTGTGTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	98779148	98775663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98778595
51605	chr11	-	2616	3	Intergenic	novelGene_2417	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	52	2	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAACTATTAAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	79867138	79863352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_79865125_79865341_79865963_79866915
51607	chr4	+	903	1	ISM	ENSMUSG00000028886.16	ENSMUST00000020197.14	4976	15	84682	132	19328	-132	mono-exon	FALSE	NA	NA	NA	NA	NA	25	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGGCATCCATGGGTGGG	NA	False	NA	NA	False	NA	NA	NA	132451038	132451941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_132451000_132451900
51609	chr5	-	2146	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_5	110.937194955028	5	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5322	False	NA	NA	False	NA	NA	NA	143314958	143302243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311085_143311979_143314145_143314326_143314853
51611	chr4	+	552	1	NIC	ENSMUSG00000037692.15	novel	517	2	NA	NA	5236	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGATTAAAGCACATCTG	3506	False	NA	NA	False	NA	NA	NA	132798795	132799347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132798800_132799300
51614	chr9	+	2621	1	ISM	ENSMUSG00000038119.16	ENSMUST00000119129.10	7503	20	83438	36	47518	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	15	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTTATATTAAAAGAGAAT	NA	False	NA	NA	False	NA	NA	NA	35416291	35418912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_35416300_35418900
51615	chr4	+	1926	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16286	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.3172754042101	7	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGTTTGCTTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	109075395	109111763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_109075543_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
51616	chr7	-	982	1	FSM	ENSMUSG00000107383.2	ENSMUST00000201488.2	1342	1	449	-89	449	89	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATGGTG	NA	False	NA	NA	False	NA	NA	NA	116424637	116423655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_116423700_116424600
51617	chr11	+	2587	16	NNC	ENSMUSG00000020888.17	novel	5037	16	NA	NA	-22	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	188.060226759644	18	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGCAAATAGAGGCCAAC	7339	False	NA	NA	False	NA	NA	NA	69891624	69900918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899809_69900020_69900251_69900344
51619	chr5	+	2164	1	ISM	ENSMUSG00000038342.16	ENSMUST00000068237.12	7303	17	60963	6	4305	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	26	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAAGGTTGTTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	123593825	123595989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_123593800_123596000
51623	chr11	+	1512	8	FSM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	8	10	-6	-2	multi-exon	FALSE	canonical	3	80	junction_5	16.9597362320652	388	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCAGTGAACTGGATCT	NA	False	NA	NA	False	NA	NA	NA	96920771	96924774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
51625	chr2	-	1839	14	NNC	ENSMUSG00000089917.8	novel	1849	15	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	32.5776269109327	345	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	4553	False	NA	99	True	NA	NA	NA	181223795	181210941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214853_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
51626	chr4	-	2144	16	Antisense	novelGene_ENSMUSG00000039768.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	101	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCCGCCAAACCGGCGAG	NA	False	NA	NA	False	NA	NA	NA	152065682	152018196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_152018279_152034848_152034972_152037292_152037369_152041557_152041660_152052953_152053083_152054300_152054424_152055311_152055388_152057938_152058124_152058245_152058298_152058651_152058760_152061399_152061563_152062455_152062526_152063728_152063787_152063899_152064042_152064372_152064505_152065159
51628	chr2	+	1752	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	1	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	708.688761022778	2	99	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACACAAAACCAGATAGTAT	NA	False	NA	NA	False	NA	NA	NA	130116366	130121214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116648_130117560_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
51629	chr5	-	2166	8	NNC	ENSMUSG00000023452.20	novel	2183	8	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	327.706189961031	1	105	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACCGTAGCTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	32942980	32893649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_32894799_32895329_32895491_32895729_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931743_32931811_32942892
51630	chr16	-	1124	10	NIC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	-3	1	combination_of_known_splicesites	FALSE	canonical	2	10	junction_7	494.221597721428	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAAGTGAATATACAATT	NA	False	NA	NA	False	NA	NA	NA	22946470	22932699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22943285_22943365_22946149_22946292_22946434
51631	chr11	-	1124	10	ISM	ENSMUSG00000020929.15	ENSMUST00000173679.8	2889	27	25826	2439	-3909	-1029	internal_fragment	FALSE	canonical	3	1277	junction_6	84.2910888191687	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCAGTGAAGGACAGCAT	NA	False	NA	NA	False	NA	NA	NA	102742714	102732065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582
51632	chr5	-	1365	4	ISM	ENSMUSG00000039477.17	ENSMUST00000151477.8	6487	16	43982	10271	-7658	-745	internal_fragment	FALSE	canonical	3	137	junction_2	10.2740233382816	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCGGGGTGAGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	142759435	142750814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142750943_142751667_142751844_142757059_142758059_142759373
51633	chr5	-	1382	3	ISM	ENSMUSG00000039477.17	ENSMUST00000151477.8	6487	16	54513	10	2873	-10	3prime_fragment	FALSE	canonical	3	187	junction_1	3	93	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAACTAAACTGTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	142748904	142740553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142741415_142745465_142745827_142748744
51634	chr2	+	2590	1	ISM	ENSMUSG00000050199.14	ENSMUST00000046548.14	5060	18	94016	5	11135	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	74	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAGTTATTGAAAACTGT	NA	False	NA	NA	False	NA	NA	NA	109842007	109844597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_109842000_109844600
51635	chr17	+	1909	9	ISM	ENSMUSG00000042099.17	ENSMUST00000172649.8	2652	11	7296	-3	-88	0	3prime_fragment	FALSE	canonical	3	265	junction_4	41.1868835310466	246	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	4431	False	NA	NA	False	NA	NA	NA	34036792	34041891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
51636	chrX	-	1476	1	Genic_Genomic	ENSMUSG00000015289.5	novel	NA	NA	NA	NA	-34	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	54	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCATTTGAGCTTATTTT	4459	False	NA	NA	False	NA	NA	NA	73397258	73395782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_73395800_73397300
51637	chr1	-	3406	10	Intergenic	novelGene_426	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	148	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTGAGTGGGCTGCGGC	NA	False	NA	NA	False	NA	NA	NA	118596180	118555680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118555832_118559970_118560132_118580036_118580106_118580596_118580706_118581474_118581550_118584094_118584249_118586735_118586847_118589710_118589832_118592601_118592717_118593840
51638	chr19	-	1882	6	NNC	ENSMUSG00000025024.8	novel	1948	6	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	92.6533323739627	34	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGTGTGTTAACAAAG	NA	False	NA	NA	False	NA	NA	NA	53378968	53367826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377758_53377854_53378846
51639	chrX	-	3118	2	NNC	ENSMUSG00000086807.9	novel	712	4	NA	NA	1671	2622	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	30	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAAATAATGGTAA	NA	False	NA	NA	False	NA	NA	NA	138255848	138245617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_138248640_138255752
51640	chr9	-	1866	6	NNC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	-28	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1798.56687393046	1	103	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATGTGAGTAGTGCC	NA	False	NA	NA	False	NA	NA	NA	110775190	110768677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769868_110771399_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
51641	chr1	+	1233	7	NNC	ENSMUSG00000053332.14	novel	502	12	NA	NA	-270	0	intron_retention	FALSE	non_canonical	0	0	junction_3	1953.49357277901	28	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160863319	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863815_160864118_160864150_160864389_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
51642	chr4	-	1601	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	-16	3	-16	0	multi-exon	FALSE	canonical	3	13	junction_1	0	159	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTGTGTACTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	119031408	119026712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_119028240_119031334
51643	chr4	-	3520	17	FSM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	255	-480	255	480	multi-exon	FALSE	canonical	3	51	junction_3	14.4566971936885	81	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGACAGCTCAACTCCAAG	7	True	NA	NA	False	NA	NA	NA	59438378	59314202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
51644	chr6	-	1041	5	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3195.57224922235	250	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	51446828	51439739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440190_51443530_51443686_51443885_51444033_51444164_51444276_51446650
51645	chr8	-	2621	1	Antisense	novelGene_ENSMUSG00000059897.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	51	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTTCGGAACGGAGCC	NA	False	NA	NA	False	NA	NA	NA	69664361	69661740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69661700_69664400
51646	chr13	+	1917	12	Genic_Genomic	ENSMUSG00000089854.3_ENSMUSG00000021458.18	novel	2824	6	NA	NA	10862	21729	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	34	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCTAGAAAACAAACAAAGA	NA	False	NA	NA	False	NA	NA	NA	63459948	63509504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_63460618_63465166_63465369_63469678_63469857_63471219_63471306_63473366_63473441_63478334_63478433_63479652_63479708_63487691_63487748_63488135_63488287_63495231_63495397_63508003_63508077_63509394
51647	chr4	+	1319	7	Antisense	novelGene_ENSMUSG00000028622.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCGGGCCCGGACGCC	1555	False	NA	NA	False	NA	NA	NA	106913078	106923964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_106913301_106914567_106914773_106917679_106917835_106919075_106919266_106921581_106921698_106921783_106921952_106923701
51648	chr10	-	1866	8	NIC	ENSMUSG00000020069.17	novel	2168	10	NA	NA	-4	-4	combination_of_known_splicesites	FALSE	canonical	3	22	junction_4	179.751302115575	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGTTGTCTGTCCTAGA	5824	False	NA	NA	False	NA	NA	NA	62859630	62850446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853302_62853390_62853864_62854005_62855171_62855307_62859498
51649	chr10	+	1810	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	2	4	2	-4	multi-exon	FALSE	canonical	3	74	junction_1	0	588	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGCAGTCTGTTGAAT	NA	False	NA	NA	False	NA	NA	NA	43455166	43460257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_43455319_43458599
51650	chrX	-	1259	5	NNC	ENSMUSG00000031168.15	novel	1743	5	NA	NA	804	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	335.987629980629	6	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGAGAGATATTTAATTA	NA	False	NA	NA	False	NA	NA	NA	8058333	8051569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8058103
51652	chr9	+	540	4	FSM	ENSMUSG00000032399.9	ENSMUST00000213760.2	596	4	296	-240	296	-156	multi-exon	FALSE	canonical	3	19599	junction_2	572.368956375363	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64084712	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64084760_64085002_64085087_64085178_64085300_64085504
51653	chr4	+	2877	17	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	14	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	77.0677208288269	1	130	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAATGATTATTTTCTA	NA	False	NA	NA	False	NA	NA	NA	141172030	141194515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174655_141175358_141175542_141189079_141189287_141189845_141190035_141190577_141190716_141190914_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192669_141192748_141192834_141192952_141193032_141193161_141193297_141193419_141193658_141193869_141193984_141194075_141194153
51654	chr2	-	2552	1	FSM	ENSMUSG00000075273.5	ENSMUST00000099996.5	2737	1	165	20	165	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	13	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAATGAAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	75768764	75766212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75766200_75768800
51655	chr4	-	1912	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	-12	-26	intron_retention	FALSE	non_canonical	0	0	junction_4	42.3488910295012	1	61	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATCAACAGAAATATGAAAA	2019	False	NA	NA	False	NA	NA	NA	116664757	116661234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663517_116663553_116663682_116663724_116663813_116663957_116664664
51656	chr4	+	1107	7	Antisense	novelGene_ENSMUSG00000028435.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGGTGGCCCGGAGCGCAG	NA	False	NA	NA	False	NA	NA	NA	41092726	41098177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41092961_41093608_41093702_41093780_41094000_41094265_41094388_41094702_41094842_41095147_41095272_41098001
51657	chr11	-	2346	4	ISM	ENSMUSG00000010025.20	ENSMUST00000147291.8	917	6	3165	-1919	-1964	1919	3prime_fragment	FALSE	canonical	3	80	junction_3	14.3836326735943	2	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGGGGTGATCCTAGCG	4219	False	NA	NA	False	NA	NA	NA	61155125	61145741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_61147707_61149566_61149685_61153044_61153254_61155071
51658	chr16	-	3790	19	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-15675	22471	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	191	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGACTCTGTGTGCTCACT	NA	False	NA	NA	False	NA	NA	NA	93607464	93566552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_93567920_93568636_93568744_93570806_93570995_93573771_93573896_93574244_93574380_93577642_93577699_93579086_93579192_93579297_93579361_93589968_93590120_93595790_93595872_93596792_93596903_93596986_93597136_93598448_93598511_93600349_93600477_93603220_93603359_93604099_93604152_93604703_93604868_93606179_93606308_93606981
51659	chr16	+	2750	21	NNC	ENSMUSG00000038084.17	novel	3153	29	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	129.020192218118	1	119	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGCCCCGTGGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	29398197	29437528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407184_29408479_29408567_29416403_29416515_29421029_29421084_29424329_29424453_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939
51660	chr9	-	2044	22	FSM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	261	5	236	-5	multi-exon	FALSE	canonical	3	66	junction_19	9.60607328677695	11	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATGGCGTTTGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	63284923	63071054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
51661	chr8	+	4072	1	Intergenic	novelGene_1765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	201	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATTCTGTCCCCATTAAA	NA	False	NA	NA	False	NA	NA	NA	118120054	118124126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_118120100_118124100
51662	chr14	+	2029	1	Intergenic	novelGene_555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTGTGCACTAAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	44906554	44908583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_44906600_44908600
51663	chr11	-	2465	8	Antisense	novelGene_ENSMUSG00000037992.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	27	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCCCCAGGGGTCCAAAG	NA	False	NA	NA	False	NA	NA	NA	98865572	98855759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_98855905_98857172_98857319_98858868_98859013_98860982_98861143_98861317_98861493_98862403_98862611_98863335_98863495_98864243
51664	chr13	-	805	2	Intergenic	novelGene_1350	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGATTTCCATTGCTGT	NA	False	NA	NA	False	NA	NA	NA	41123208	41120622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_41120733_41122513
51665	chr19	+	1114	2	Intergenic	novelGene_1268	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTACATACAGATGCCA	NA	False	NA	NA	False	NA	NA	NA	41513761	41515412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41514024_41514560
51666	chr4	+	962	6	ISM	ENSMUSG00000028796.18	ENSMUST00000136377.8	941	7	50283	-123	-5143	123	3prime_fragment	FALSE	canonical	1	2	junction_5	4.48998886412873	4	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGTTCCTGCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	128598813	128606110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_128599028_128601729_128601889_128602769_128602848_128603291_128603457_128604850_128604938_128605851
51667	chr4	+	2188	6	ISM	ENSMUSG00000028796.18	ENSMUST00000106079.10	2535	7	15817	13	15420	-13	3prime_fragment	FALSE	canonical	3	159	junction_1	18.8403821617291	69	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGCCTCTTCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	128637194	128646661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_128637350_128638794_128638925_128639582_128639698_128640893_128641036_128641800_128642078_128645292
51668	chr3	+	1338	14	NIC	ENSMUSG00000028109.15	novel	1385	15	NA	NA	-17	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	95.5522100847019	2	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATATTGTGTTTACCTG	NA	False	NA	NA	False	NA	NA	NA	95466970	95494902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95467044_95468538_95468592_95469790_95469936_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
51670	chr15	-	2589	14	ISM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	4343	0	4307	0	3prime_fragment	FALSE	canonical	3	29	junction_13	6.80932183887099	56	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGCCTCTACTTTACT	191	False	NA	NA	False	NA	NA	NA	102136036	102124429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102135832
51672	chr4	+	1149	9	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	-16	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	6191.00139188928	2	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCACCAGTGTGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	150321680	150333324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323952_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331202_150333120
51673	chr5	+	3169	4	Antisense	novelGene_ENSMUSG00000044681.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGTGGAGCCGCCAAGGG	NA	False	NA	NA	False	NA	NA	NA	28405821	28414948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_28408434_28412281_28412382_28414121_28414324_28414693
51674	chr7	+	1212	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	-1	-409	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1113.34467259695	5	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGATTGCGTGTAGAATGT	NA	False	NA	NA	False	NA	NA	NA	137039382	137069914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_137039501_137046731_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
51675	chr2	-	2248	14	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61329	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	25.6455124279533	1	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	93760831	93685706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93696026_93696575_93760610
51676	chr10	-	1944	7	NNC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	-7	3	intron_retention	FALSE	canonical	3	29	junction_1	68.5727513099935	171	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	115198143	115176643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_115177245_115178378_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
51677	chr2	-	2322	14	NNC	ENSMUSG00000027408.8	novel	2366	14	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	60.5735896518739	2	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTTGAGTTCCTATTC	NA	False	NA	NA	False	NA	NA	NA	130239490	130232694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130233063_130233157_130233261_130234990_130235131_130235299_130235602_130235685_130235866_130235951_130236149_130236273_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
51678	chr4	+	1991	6	ISM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	-2	4	-2	-2	intron_retention	FALSE	canonical	3	450	junction_1	96.134489128512	11	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACCCTGCCATTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	118266560	118272304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823
51679	chr5	-	1888	4	ISM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	1062	65	934	-65	3prime_fragment	FALSE	canonical	3	302	junction_1	70.8848832027441	227	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTGAAAATGATTTTCT	NA	False	NA	-55	True	NA	NA	NA	3696872	3690025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_3691581_3693557_3693742_3694880_3694941_3696783
51680	chr1	+	2948	2	Antisense	novelGene_ENSMUSG00000054387.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGTGTGCCTATAAGGAC	NA	False	NA	NA	False	NA	NA	NA	132928115	132933410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_132929182_132931528
51682	chr13	+	3549	7	ISM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	35	-8	35	8	intron_retention	FALSE	canonical	2	4	junction_2	2.74873708374511	18	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTATAATCATGTATT	NA	False	NA	NA	False	NA	NA	NA	52250811	52278202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192
51684	chr6	-	1556	8	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2035.80510073122	1	82	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471681	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437963_125438060_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
51685	chr15	-	1491	2	Antisense	novelGene_ENSMUSG00000022354.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	23	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGGGGCTGCCGGGAACC	NA	False	NA	NA	False	NA	NA	NA	58807973	58805659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_58805786_58806608
51687	chr5	-	1217	1	Antisense	novelGene_ENSMUSG00000007812.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTGGTGCACAACCATCT	NA	False	NA	NA	False	NA	NA	NA	145174610	145173393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_145173400_145174600
51688	chr17	-	1525	8	NNC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	429.472433840138	2	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATTCTCAATATAATCT	NA	False	NA	NA	False	NA	NA	NA	32253494	32165072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232315_32232442_32241739_32241844_32252234_32252386_32253418
51689	chr3	+	2852	22	NIC	ENSMUSG00000037270.19	novel	3958	27	NA	NA	14	-891	combination_of_known_junctions	FALSE	canonical	3	50	junction_5	8.81737102236442	24	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATGTCAAATGACATATG	NA	False	NA	NA	False	NA	NA	NA	36917318	36985284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_36917429_36918535_36918635_36924146_36924274_36928346_36928464_36929598_36929678_36931822_36931888_36939505_36939693_36941367_36941450_36941823_36942018_36943971_36944052_36944943_36945095_36949407_36949565_36949954_36950034_36960839_36960932_36962280_36962399_36971766_36971923_36972600_36972699_36974003_36974183_36974328_36974436_36975367_36975577_36982583_36982812_36985146
51690	chr3	+	1090	7	FSM	ENSMUSG00000005687.15	ENSMUST00000135017.2	1405	7	-23	338	0	1	multi-exon	FALSE	canonical	3	101	junction_2	1366.36225268249	349	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5023	False	NA	NA	False	NA	NA	NA	103079064	103086144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
51691	chr11	+	1616	1	NIC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53500	-694	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTTCAGGTGCTTCAA	NA	False	NA	NA	False	NA	NA	NA	62402933	62404549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62402900_62404500
51692	chr11	-	2382	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	35	0	31	0	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	238	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	NA	False	NA	NA	NA	121120100	121113413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
51694	chr19	-	256	1	ISM	ENSMUSG00000024642.18	ENSMUST00000052011.15	4545	20	4	149642	4	-54066	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATCTCCAGAGAACCC	NA	False	NA	NA	False	NA	NA	NA	14575411	14575155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_14575200_14575400
51695	chr9	-	2783	8	Antisense	novelGene_ENSMUSG00000032349.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	172	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGGCGCGGCCAGCCAA	NA	False	NA	NA	False	NA	NA	NA	77891798	77824650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_77824818_77864425_77864494_77868151_77868334_77883064_77883143_77884027_77884202_77887106_77887229_77888751_77888885_77889939
51696	chr17	+	2699	4	Antisense	novelGene_ENSMUSG00000024459.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACTGAGACTTTGTTCC	NA	False	NA	NA	False	NA	NA	NA	37294701	37300418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_37295994_37298306_37298416_37298546_37298823_37299396
51697	chr2	+	2208	8	FSM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	324	2	324	-2	multi-exon	FALSE	canonical	3	204	junction_7	23.0465367711259	130	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATTTTATTTTGTTTAT	6830	False	NA	NA	False	NA	NA	NA	76505948	76527170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_76505979_76510506_76510624_76513073_76513230_76516962_76517100_76517625_76517791_76520788_76520833_76522992_76523109_76525727
51698	chr6	-	3085	12	NNC	ENSMUSG00000030094.9	novel	330	3	NA	NA	-33	-2674	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	36.3452226105656	8	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTAGTCTTTATTTGTAA	429	False	NA	NA	False	NA	NA	NA	91492810	91471928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_91472548_91472726_91473152_91475011_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
51699	chr11	+	4628	20	ISM	ENSMUSG00000055670.15	ENSMUST00000207107.2	11306	55	92904	880	-23138	428	3prime_fragment	FALSE	canonical	0	0	junction_6	4.91309517057472	9	29	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCCCAGAGAAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	72779983	72817064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72780086_72781917_72782052_72784087_72784239_72785971_72786112_72790329_72790608_72791457_72791633_72792152_72792286_72797657_72797858_72799219_72799340_72800955_72801148_72801987_72802089_72803648_72803785_72803876_72804237_72806042_72806187_72807244_72807414_72807994_72808094_72808529_72808696_72813155_72813310_72813935_72814008_72815462
51700	chr4	-	2263	6	NNC	ENSMUSG00000051517.15	novel	1508	8	NA	NA	10	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	49.5217124098107	1	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTTGTTTTTGCAAAAGC	-4	True	NA	NA	False	NA	NA	NA	43499651	43496159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_43496721_43496822_43497711_43497958_43498030_43498585_43498705_43498895_43499338_43499469
51702	chr16	-	2625	18	NNC	ENSMUSG00000022843.18	novel	3511	22	NA	NA	5	22	intron_retention	FALSE	canonical	3	33	junction_11	58.1331843960718	1	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCCTCTCCCTATAACC	NA	False	NA	NA	False	NA	NA	NA	20534856	20526433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530887_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
51703	chrX	-	1847	8	NNC	ENSMUSG00000031310.17	novel	1890	7	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.5948908918219	150	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	100463960	100458538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100459013_100459100_100459177_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463933
51704	chr1	-	2754	1	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACAAACCCCAGGTTTAG	1774	False	NA	NA	False	NA	NA	NA	87648888	87646134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87646100_87648900
51706	chr10	+	1542	12	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_11	601.616513862499	1	49	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	1621	False	NA	NA	False	NA	NA	NA	79690498	79700266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698282_79698376_79698486_79698558_79700050
51707	chr3	-	1786	2	NIC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	98	-3	intron_retention	FALSE	canonical	3	230	junction_1	0	450	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTCTCATGGTCATG	NA	False	NA	-16	True	NA	NA	NA	75562940	75554755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_75556298_75562696
51708	chr5	-	1740	1	FSM	ENSMUSG00000104986.2	ENSMUST00000196242.2	1007	1	30	-763	30	763	mono-exon	FALSE	NA	NA	NA	NA	NA	18	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGATTATATAAACTAGAT	5132	False	NA	NA	False	NA	NA	NA	45827020	45825280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_45825300_45827000
51709	chr9	+	3710	20	NNC	ENSMUSG00000033335.18	novel	1772	12	NA	NA	-252	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	250.694171984584	1	188	14	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTACTGGTGGCTACGTG	96	False	NA	NA	False	NA	NA	NA	21368150	21418422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21368708_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384037_21385809_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401098_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
51710	chr1	-	2183	1	ISM	ENSMUSG00000022995.17	ENSMUST00000193703.6	11229	14	113821	7274	998	742	mono-exon	FALSE	NA	NA	NA	NA	NA	10	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAAGTCCTAAACAAAGC	NA	False	NA	NA	False	NA	NA	NA	181733405	181731222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_181731200_181733400
51711	chr19	-	1370	11	NNC	ENSMUSG00000024725.14	novel	1322	11	NA	NA	-7	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	435.642238539837	2163	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTATCTGTTTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	18609194	18558179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18585936_18586028_18608983
51712	chr7	-	1512	5	FSM	ENSMUSG00000025147.8	ENSMUST00000084418.4	1490	5	11	-33	-5	18	multi-exon	FALSE	canonical	3	149	junction_3	10.8857705285386	461	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGAGTCTTCCTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	141614791	141562253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141614721
51713	chr2	-	1567	9	FSM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	-242	659	18	-659	multi-exon	FALSE	canonical	3	349	junction_7	16.1240309786356	1156	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCCTGTCTTCTAATGT	NA	False	NA	NA	False	NA	NA	NA	30872195	30862847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
51714	chr2	+	1644	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	229	38	229	-38	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	604	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGGCTTTGTGTAATAAA	NA	False	NA	NA	False	NA	NA	NA	143757468	143785206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
51715	chr9	-	1203	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5827.33755329138	16	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8134	False	NA	-46	True	NA	NA	NA	78387972	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387193_78387877
51717	chr9	+	782	6	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1449	-148	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7855.73330504543	2	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTGTGTGACTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	64082123	64085800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082133_64084237_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
51718	chr17	-	1288	6	Antisense	novelGene_ENSMUSG00000046711.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	59	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGCGACCCAGGGGC	NA	False	NA	NA	False	NA	NA	NA	27782485	27775600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_27775686_27778506_27778675_27779898_27779984_27780433_27780483_27781409_27781668_27781842
51720	chr3	+	1896	14	FSM	ENSMUSG00000040213.14	ENSMUST00000106218.8	1888	14	-7	-1	-7	1	multi-exon	FALSE	canonical	3	81	junction_2	10.4835740777555	283	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACCTCATCTGCAGCTC	NA	False	NA	NA	False	NA	NA	NA	142406804	142450289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_142406937_142412449_142412553_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
51721	chr7	-	1139	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	47	-52	47	52	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	1889	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCAGTGCTGATAGTTT	NA	False	NA	NA	False	NA	NA	NA	78432790	78424931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
51722	chr1	+	2259	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	75	-601	-24	601	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	513	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATATCATGTCTTACAAA	3634	False	NA	NA	False	NA	NA	NA	55092003	55112462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
51723	chr15	+	1392	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	-9	0	-9	0	multi-exon	FALSE	canonical	3	37	junction_4	11.5516232625549	522	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2651	False	NA	NA	False	NA	NA	NA	58004763	58022050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
51724	chr13	-	1157	1	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	706	331	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCACGTTAGGAGGGAA	NA	False	NA	NA	False	NA	NA	NA	21578227	21577070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_21577100_21578200
51725	chr13	-	1078	1	Genic_Genomic	ENSMUSG00000021327.20	novel	NA	NA	NA	NA	4864	-217	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTTAATAACCTTGCT	NA	False	NA	NA	False	NA	NA	NA	21574069	21572991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_21573000_21574100
51726	chr10	+	843	2	NNC	ENSMUSG00000064030.16	novel	1158	3	NA	NA	16641	-330	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	0	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTAGGCTCTCTTTCATC	NA	False	NA	NA	False	NA	NA	NA	128601037	128602098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128601261_128601478
51727	chr13	-	1921	11	NNC	ENSMUSG00000034152.7	novel	4922	13	NA	NA	20	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	80.033992778069	39	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGGTGTGATGTCAG	7193	False	NA	NA	False	NA	NA	NA	74356808	74320110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74320364_74321414_74321473_74330284_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
51728	chr6	-	3307	9	FSM	ENSMUSG00000036667.15	ENSMUST00000121083.8	3342	9	33	2	5	-2	multi-exon	FALSE	canonical	1	2	junction_8	3.27633560552029	20	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTGCTCCAAAGGATA	NA	False	NA	NA	False	NA	NA	NA	42669988	42646877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_42647258_42650286_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42669866
51729	chr16	-	2789	14	ISM	ENSMUSG00000022892.12	ENSMUST00000227723.2	8167	18	93667	4768	-52474	-3	3prime_fragment	FALSE	canonical	3	25	junction_10	13.9699593168201	57	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACTCCAGGCAAGACGT	NA	False	NA	NA	False	NA	NA	NA	84876987	84751340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84837138_84837196_84840463_84840632_84853211_84853415_84876727
51730	chr11	-	3253	15	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	72	2313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	220.388432601373	1	153	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTTTCCTGATGATTTT	NA	False	NA	NA	False	NA	NA	NA	95896694	95851948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95853354_95857029_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864001_95864760_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
51732	chr15	+	1343	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	34	-558	24	558	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	1978	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATTCATTCATTCATTC	NA	False	NA	NA	False	NA	NA	NA	79975568	79998200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
51733	chr6	+	948	5	Antisense	novelGene_ENSMUSG00000002870.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGATTAAGAGGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	88860845	88864057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_88861092_88861356_88861516_88861665_88861846_88862824_88863072_88863941
51734	chr17	+	2061	7	FSM	ENSMUSG00000034254.18	ENSMUST00000037489.15	2190	7	93	36	-19	-5	multi-exon	FALSE	canonical	3	118	junction_1	5.07991688470939	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGACGTGGGGTTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	34824927	34832387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
51737	chr11	+	632	5	NNC	ENSMUSG00000018286.7	novel	798	6	NA	NA	58	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2661.5505349326	5	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTGTGTGAAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	70416269	70418479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70416278_70417119_70417252_70417369_70417500_70418004_70418150_70418262
51740	chr14	+	2012	3	NNC	ENSMUSG00000021840.18	novel	4531	3	NA	NA	99	-669	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	122.5	1	83	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAATAAACTGGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	47548503	47559883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47548571_47556868_47557174_47558243
51741	chr9	+	2159	10	NNC	ENSMUSG00000032077.6	novel	2539	10	NA	NA	8	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	50.9606480955746	1	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTAAAAATAAACACATATT	NA	False	NA	NA	False	NA	NA	NA	46194313	46210048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203749_46203820_46209712
51742	chr11	+	2256	11	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	5	0	intron_retention	FALSE	canonical	3	42	junction_2	36.0373417443629	220	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	NA	False	NA	NA	NA	102992518	103003026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102992615_102993507_102993972_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
51743	chr4	+	1318	12	Intergenic	novelGene_1833	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACAAAGCGGCGGCGGC	NA	False	NA	NA	False	NA	NA	NA	41211547	41275102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41211895_41216564_41216636_41218312_41218362_41221553_41221622_41223355_41223459_41226278_41226334_41227197_41227277_41229694_41229859_41233611_41233718_41235518_41235590_41251529_41251672_41275039
51744	chr9	-	921	6	ISM	ENSMUSG00000037681.14	ENSMUST00000042158.13	4483	23	-42	20738	-3	2113	5prime_fragment	FALSE	canonical	3	14	junction_3	6.21610810716802	1	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGCTCAAAGCCTAGGAA	NA	False	NA	NA	False	NA	NA	NA	99240613	99212753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_99212844_99213411_99213479_99214858_99214936_99218117_99218253_99220820_99220863_99240103
51746	chr9	-	1500	13	ISM	ENSMUSG00000037681.14	ENSMUST00000042158.13	4483	23	34302	2000	794	-2000	internal_fragment	FALSE	canonical	3	18	junction_3	3.17433282579015	1	16	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGCTTCTCACAGTGGTA	NA	False	NA	NA	False	NA	NA	NA	99206269	99194015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_99194049_99197239_99197346_99198698_99198831_99199258_99199358_99199940_99200441_99201555_99201706_99202307_99202395_99202886_99202956_99203434_99203498_99203579_99203643_99204150_99204241_99204649_99204699_99206210
51747	chr10	+	894	6	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1590.09302872505	6	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2033	False	NA	NA	False	NA	NA	NA	61484311	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61484529_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
51748	chr1	+	2672	10	FSM	ENSMUSG00000041782.15	ENSMUST00000038760.10	2993	10	314	7	314	-7	multi-exon	FALSE	canonical	3	102	junction_3	17.5119007154183	97	58	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCGCAGAATTTCACATAA	5932	False	NA	NA	False	NA	NA	NA	135746649	135761073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_135746755_135753492_135753631_135754901_135755785_135756452_135756558_135757426_135757471_135758637_135758711_135758820_135758959_135759262_135759350_135759611_135759687_135760049
51749	chr2	+	1125	5	FSM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	-24	4725	-24	-4725	multi-exon	FALSE	canonical	3	432	junction_1	48.4355241532493	1500	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGATTATCTTCTGTTT	336	False	NA	NA	False	NA	NA	NA	112285317	112297782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_112285646_112289804_112289925_112293145_112293285_112295081_112295163_112297325
51750	chr4	+	1255	5	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078497.10	novel	585	4	NA	NA	-11	2158	multi-exon	FALSE	non_canonical	0	0	junction_3	44.8908398228414	3	36	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	4099	False	NA	NA	False	NA	NA	NA	147314729	147477619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147447267_147447362_147469673_147469744_147474656_147475440_147477474
51751	chr9	-	2277	11	NIC	ENSMUSG00000031935.10	novel	3964	12	NA	NA	2	137	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	54.3050642205679	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCCCAAGTATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	15191197	15173165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_15173735_15174899_15175060_15176647_15176766_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
51753	chr7	-	3548	16	NNC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	24	-702	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28.6562771870706	1	163	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTTGAAGCAAAAGATTGA	3763	False	NA	NA	False	NA	NA	NA	98305729	98243407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98244520_98246236_98246392_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275924_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
51754	chr3	+	1803	8	Antisense	novelGene_ENSMUSG00000042642.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	344	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCCCGCCTTACAATGC	7496	False	NA	NA	False	NA	NA	NA	89310388	89319195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_89310605_89310698_89310780_89312890_89313074_89313157_89313261_89314715_89314863_89315727_89316472_89318463_89318691_89319093
51755	chr11	+	2002	11	ISM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	86	13027	-1	-13027	5prime_fragment	FALSE	canonical	3	251	junction_10	29.380946206683	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTTCAGTATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	72938694	72967116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440
51757	chr1	-	1492	7	NNC	ENSMUSG00000040843.11	novel	4380	7	NA	NA	84	660	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	206.750050382904	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATAGTTTGCTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	165064407	165042490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165055870_165064298
51759	chr2	-	1734	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	76	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	413	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	NA	False	NA	NA	NA	30249252	30234820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
51760	chr17	+	3545	25	ISM	ENSMUSG00000023805.18	ENSMUST00000080283.13	4793	26	34408	1057	71	36	3prime_fragment	FALSE	canonical	2	9	junction_23	3.86198531270583	1	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAACCAAGAACACTTCAG	NA	False	NA	NA	False	NA	NA	NA	6026085	6087773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_6026157_6036246_6036518_6040410_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560_6069754_6072373_6072533_6073933_6074091_6075258_6075377_6076430_6076650_6076751_6076831_6077421_6077591_6078693_6078862_6082971_6083085_6084089_6084199_6085685_6085835_6087658
51761	chr7	+	1624	12	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-40	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	523.061237190484	25	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTACTTTATGGATCCTC	134	False	NA	NA	False	NA	NA	NA	5065203	5082926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082666
51762	chrX	+	4314	14	ISM	ENSMUSG00000015214.15	ENSMUST00000015358.8	4634	15	5037	9	-15	-9	3prime_fragment	FALSE	canonical	3	55	junction_12	10.4105090281336	24	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCCTGGTCTCTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	70413402	70462793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_70413511_70426805_70426882_70431828_70431924_70432258_70432367_70435295_70435398_70436121_70436206_70436901_70437052_70437882_70438072_70444146_70444333_70445333_70445541_70448477_70448571_70454338_70454453_70455810_70455988_70460168
51763	chr2	+	2198	15	NNC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	28	-4968	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.1064770927402	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATGTTTCTTAAATATT	NA	False	NA	NA	False	NA	NA	NA	132658088	132680847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132658329_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625
51764	chr3	+	1511	9	Antisense	novelGene_ENSMUSG00000027984.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	28	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGAGAGGTCCCGGAGCG	NA	False	NA	NA	False	NA	NA	NA	131027096	131065693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_131027724_131027888_131027936_131029190_131029307_131034581_131034661_131036166_131036251_131038804_131038938_131042065_131042209_131043467_131043579_131065522
51765	chr18	+	3287	5	FSM	ENSMUSG00000024601.10	ENSMUST00000025503.10	3377	5	81	9	67	-9	multi-exon	FALSE	canonical	3	445	junction_3	47.2175814713121	150	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGTAAACAAGAAGGGTC	NA	False	NA	NA	False	NA	NA	NA	58792618	58813431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_58792870_58804279_58804400_58804519_58804724_58806321_58806439_58810836
51766	chr12	-	1125	5	NNC	ENSMUSG00000021242.10	novel	3299	4	NA	NA	-27	81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1284.35263362521	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCACTCCTGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	84819715	84803184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84803842_84803955_84803987_84807493_84807667_84812050_84812159_84819559
51767	chr9	-	3023	2	Antisense	novelGene_ENSMUSG00000041444.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_1	0	51	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAATTGTGTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	32047550	32044429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_32046898_32046995
51768	chr6	-	2223	2	Genic_Genomic	ENSMUSG00000044211.10	novel	537	1	NA	NA	-21	2140	multi-exon	TRUE	non_canonical	0	0	junction_1	0	104	107	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATAAATTTTGTCAAACT	NA	False	NA	NA	False	NA	NA	NA	48502045	48499347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_48500378_48500852
51769	chr14	-	1628	8	ISM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	3900	15	3900	0	3prime_fragment	FALSE	canonical	3	193	junction_5	14.0610911992735	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCTGTTTAGTAGTCCT	4702	False	NA	NA	False	NA	NA	NA	55946645	55937490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339
51774	chr4	+	323	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	23	-38371	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_2	137	2501	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGCTGTTCACATTTC	NA	False	NA	NA	False	NA	NA	NA	146695440	146703693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146695586_146697966_146698060_146703608
51779	chr19	+	2524	9	NNC	ENSMUSG00000045098.20	novel	1721	10	NA	NA	15	-5	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_7	90.2811580563741	75	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACCAAAAAAGTGTCAGAG	NA	False	NA	NA	False	NA	NA	NA	3818183	3856319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854768_3854834_3854916
51780	chr9	-	1341	8	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	503.545916273698	63	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	NA	False	NA	NA	NA	70328800	70314973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_70315258_70317398_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
51781	chr13	-	1605	4	FSM	ENSMUSG00000043190.15	ENSMUST00000050997.2	2807	4	-30	1232	-30	0	multi-exon	FALSE	canonical	3	34	junction_3	20.2703943940144	226	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	76166711	76150885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76165639
51782	chr7	-	3024	15	FSM	ENSMUSG00000025507.14	ENSMUST00000190882.7	2894	15	261	-391	261	-9	multi-exon	FALSE	canonical	2	3	junction_13	17.0395697943202	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTGTGTGAGACAGA	NA	False	NA	NA	False	NA	NA	NA	141022972	141018046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021774_141022063_141022478_141022880
51784	chr19	-	317	3	Intergenic	novelGene_1192	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_2	1.5	61	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTGCTGAGACGGCTC	3377	False	NA	NA	False	NA	NA	NA	5069133	5067493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_5067699_5068325_5068385_5069080
51786	chr5	-	1120	5	Antisense	novelGene_ENSMUSG00000029474.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCACGCCCCGGGAAGAC	9630	False	NA	NA	False	NA	NA	NA	123006344	122988201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_122988360_123002047_123002462_123004868_123004967_123005179_123005385_123006099
51787	chr17	+	2225	1	NIC	ENSMUSG00000073468.13	novel	1049	8	NA	NA	-2095	650	mono-exon	FALSE	NA	NA	NA	NA	NA	2	102	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTGAGTTTCAACACCAG	8455	False	NA	NA	False	NA	NA	NA	8535465	8537690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_8535500_8537700
51788	chr1	+	1047	5	Antisense	novelGene_ENSMUSG00000014226.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	22	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCTCTTCTAGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	160030732	160036139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_160031296_160032538_160032636_160033666_160033764_160034180_160034279_160035947
51789	chr18	-	2493	13	NIC	ENSMUSG00000044252.19	novel	2687	14	NA	NA	21	0	intron_retention	FALSE	canonical	2	4	junction_12	104.565337097062	1	94	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAAAGTGTGAATGC	NA	False	NA	NA	False	NA	NA	NA	12996416	12888394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996199
51791	chrX	+	1097	6	NNC	ENSMUSG00000015217.12	novel	1571	5	NA	NA	-1	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	329.453486853607	25	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAACTGTTCTGTATTAC	NA	False	NA	NA	False	NA	NA	NA	70599522	70604251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70599615_70601658_70601814_70602038_70602179_70602703_70602879_70603272_70603608_70604051
51792	chr2	+	2736	12	Antisense	novelGene_ENSMUSG00000027408.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	75	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGCCCCCCGCCCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	130232975	130239496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_130233063_130233157_130233263_130234992_130235130_130235302_130235599_130235682_130235865_130235950_130236352_130236654_130236749_130236843_130237642_130237746_130237891_130238029_130238143_130238254_130238411_130239273
51793	chr17	+	2510	18	FSM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	55	1	0	-1	multi-exon	FALSE	canonical	3	325	junction_9	22.8588265568706	196	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCGGCCACCTTCCTAGT	9796	False	NA	NA	False	NA	NA	NA	34866174	34874047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34866291_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
51794	chr3	+	518	1	ISM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	8291	3	8228	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	182	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	NA	False	NA	NA	False	NA	NA	NA	88495205	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88495200_88495700
51795	chr7	-	1733	11	NNC	ENSMUSG00000031027.16	novel	1304	11	NA	NA	51229	3	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_10	9.45568612000208	122	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTCCCTCACGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	108986795	108878426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
51798	chr1	-	1966	10	NNC	ENSMUSG00000026047.14	novel	2359	10	NA	NA	-82	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	103.973762122357	4	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGGGTCTGTTTTGTTAC	NA	False	NA	NA	False	NA	NA	NA	44158050	44146048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44149997_44151828_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
51799	chr5	+	1395	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	33	1169	33	435	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	936	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTGTCAGTATATTC	NA	False	NA	NA	False	NA	NA	NA	123366285	123387025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
51800	chr9	+	2745	2	Intergenic	novelGene_1050	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGGCTGGTGAGATGGC	NA	False	NA	NA	False	NA	NA	NA	57110614	57113428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_57111210_57111278
51801	chrX	+	1860	4	FSM	ENSMUSG00000040621.15	ENSMUST00000056410.11	1862	4	-1	3	-1	-1	multi-exon	FALSE	canonical	3	11	junction_1	17.1529071070248	160	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATGGACTGGATTTGATC	NA	False	NA	NA	False	NA	NA	NA	164953448	164973505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_164953547_164961787_164961827_164963348_164963806_164972239
51802	chr3	-	1133	6	NIC	ENSMUSG00000005779.13	novel	1183	7	NA	NA	10	-41	intron_retention	FALSE	canonical	3	1712	junction_3	86.6316339451127	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGACTTTTGTAAAATAA	NA	False	NA	NA	False	NA	NA	NA	94794262	94791673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
51803	chr16	+	1165	1	Intergenic	novelGene_3642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGCCAAATTAGAGTC	NA	False	NA	NA	False	NA	NA	NA	33297006	33298171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_33297000_33298200
51804	chr16	+	2043	5	NNC	ENSMUSG00000021018.9	novel	950	5	NA	NA	-68	-3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	353.561168682309	63	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGACTCTTCTCCATTGT	1001	False	NA	NA	False	NA	NA	NA	20536511	20541011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20539463
51808	chr9	-	2988	17	FSM	ENSMUSG00000047766.16	ENSMUST00000065603.12	3017	17	18	11	-16	-1	multi-exon	FALSE	canonical	1	5	junction_10	6.23372881989584	49	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAAGTCCAGTTT	3513	False	NA	NA	False	NA	NA	NA	60595423	60494522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787_60587986_60592317_60592406_60594421_60594479_60595094
51809	chr9	-	2645	15	FSM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	41	20	41	-20	multi-exon	FALSE	canonical	3	27	junction_4	6.31163486696415	1	50	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAATCACAAGATAAA	8120	False	NA	NA	False	NA	NA	NA	118917288	118900614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118917135
51810	chr17	+	700	1	Intergenic	novelGene_9	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCGTCCCCAGCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	8386879	8387579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_8386900_8387600
51811	chr5	+	912	10	NNC	ENSMUSG00000029152.14	novel	798	5	NA	NA	12	-373	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	359.889420602674	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTACCTACATGCTTG	NA	False	NA	NA	False	NA	NA	NA	73450407	73470884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_73450465_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
51812	chr5	+	1316	9	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	-43	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1677.35203799769	3	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGTCTCTGTAGATTTC	566	False	NA	NA	False	NA	NA	NA	135807446	135819241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818165_135818512_135818632_135818930
51813	chr2	-	419	1	Intergenic	novelGene_2784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACCTTCTATGTCCCCTT	NA	False	NA	NA	False	NA	NA	NA	166338008	166337589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_166337600_166338000
51814	chr10	-	1591	2	FSM	ENSMUSG00000035215.10	ENSMUST00000218931.2	785	2	-14	-792	2	-4	multi-exon	FALSE	canonical	3	4552	junction_1	0	112	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCTTCCTGCTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	80691041	80688662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80689664_80690451
51816	chr7	-	1455	15	NNC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	639.129226657134	2	47	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGGACCTCTGCTGTG	-16	True	NA	NA	False	NA	NA	NA	45083704	45071328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45071430_45071515_45071591_45071797_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
51817	chrX	-	1688	12	NNC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	85.0383481798478	42	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	NA	False	NA	NA	NA	36374024	36355330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36355463_36356206_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
51818	chr6	+	1522	4	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGCTAAGTAGACCAGG	1083	False	NA	NA	False	NA	NA	NA	122295262	122298231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122297007_122297170_122297283_122297896
51821	chr15	+	2708	12	NNC	ENSMUSG00000022385.12	novel	2641	12	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	186.240358339379	1	185	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7116	False	NA	NA	False	NA	NA	NA	85743924	85760774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748304_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
51822	chr12	+	1280	10	NIC	ENSMUSG00000021115.16	novel	3711	14	NA	NA	18	-12	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	320.534314720874	29	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGTCTTTTACACAAGC	NA	False	NA	NA	False	NA	NA	NA	105976592	106041656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
51824	chr9	-	2645	5	FSM	ENSMUSG00000074829.11	ENSMUST00000185949.2	634	5	13	-2024	13	-15	multi-exon	FALSE	non_canonical	0	0	junction_2	8.44097150806707	39	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCAAAAGAAAATGATATAC	NA	False	NA	NA	False	NA	NA	NA	124075288	124054448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124074305_124074381_124075189
51826	chr11	+	2657	4	ISM	ENSMUSG00000053580.17	ENSMUST00000146162.8	3811	12	18422	42	12918	-42	3prime_fragment	FALSE	canonical	2	5	junction_1	3.29983164553722	3	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAAGTAAGATGT	NA	False	NA	NA	False	NA	NA	NA	105805726	105814899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_105805810_105807739_105807887_105810776_105810878_105812573
51827	chr2	-	1472	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	118	8	70	-8	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	2	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGTGGCTTCGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	25114596	25112179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
51830	chr7	-	2431	3	Antisense	novelGene_ENSMUSG00000074887.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	113	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAAGGCACCTGGAAGCA	NA	False	NA	NA	False	NA	NA	NA	42891834	42863461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_42863571_42884605_42885018_42889924
51831	chr7	+	1635	8	NNC	ENSMUSG00000025510.15	novel	1708	8	NA	NA	-7	-72	intron_retention	FALSE	canonical	3	18	junction_7	96.054618816163	4	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATCTCACTGCTGTATTC	NA	False	NA	NA	False	NA	NA	NA	141047297	141051304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050344_141050463
51832	chr17	+	1655	1	NIC	ENSMUSG00000025731.17	novel	1243	6	NA	NA	8	3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	44	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCTTGCTGGGAATACC	7203	False	NA	NA	False	NA	NA	NA	26094482	26096137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26094500_26096100
51833	chr11	-	1638	3	NNC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	929	847	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAATGTGTCCTGGTCTT	6003	False	NA	NA	False	NA	NA	NA	116743920	116740732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116741788_116742846_116743129_116743619
51834	chr5	+	3246	9	ISM	ENSMUSG00000029436.10	ENSMUST00000031390.10	6422	10	10383	2888	-2074	-2888	3prime_fragment	TRUE	canonical	3	158	junction_5	23.5677215699779	90	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTTGACAGCTCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	129671615	129685275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129671741_129672017_129672148_129672468_129672753_129673625_129673803_129675722_129675823_129678996_129679080_129679165_129679319_129682578_129682837_129683339
51835	chr18	-	4781	6	NIC	ENSMUSG00000024558.13	novel	4594	6	NA	NA	38	-4	combination_of_known_junctions	FALSE	canonical	3	24	junction_5	6.68131723539603	22	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTCGTCAGGAATTGTC	9426	False	NA	NA	False	NA	NA	NA	74198392	74061560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_74064166_74066967_74067170_74068076_74068239_74070200_74070346_74102961_74104348_74198111
51836	chrX	+	1103	5	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6104.18902783163	1	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059315	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060983_36061388_36061509_36062071_36062159_36062227
51837	chr2	+	1424	7	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-63	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1056.74952356533	2	56	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAATAAAAACACAAAACCA	NA	False	NA	NA	False	NA	NA	NA	130118156	130121206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130118539_130118626_130118772_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
51838	chrX	+	1291	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-29	-52	-29	52	mono-exon	FALSE	NA	NA	NA	NA	NA	2	69	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTACTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068780	13070071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
51839	chr10	-	1711	12	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	52.8487628572059	29	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	NA	False	NA	NA	NA	30476669	30410710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
51840	chr1	-	2346	3	Intergenic	novelGene_336	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	59	junction_2	5.5	360	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTTAACATAAATTTTGT	NA	False	NA	NA	False	NA	NA	NA	11465705	11454317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_11456468_11457012_11457110_11465606
51841	chr11	+	1150	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	8	-275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5640	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAAATATATCATGCCT	2999	False	NA	NA	False	NA	NA	NA	75623702	75656396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642767_75655521
51842	chr19	-	1891	12	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	229	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	572.011919774087	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGTTAGTGTTTTGTC	6283	False	NA	NA	False	NA	NA	NA	60770399	60749559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60749728_60760593_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765059_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322
51843	chr14	-	1447	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	6	44	6	-44	multi-exon	TRUE	canonical	3	19	junction_7	4.40778532015472	282	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGCTGGTGCTTATT	NA	False	NA	NA	False	NA	NA	NA	57635980	57512493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
51844	chr7	+	1170	1	Antisense	novelGene_ENSMUSG00000030739.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGAACTCAATTTGTAG	5783	False	NA	NA	False	NA	NA	NA	44255850	44257020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44255800_44257000
51845	chr14	-	2247	2	ISM	ENSMUSG00000033111.17	ENSMUST00000223631.2	1014	5	12988	-167	-1998	-2	3prime_fragment	FALSE	canonical	3	12	junction_1	0	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCCTCTTGAGTCTCCAG	5267	False	NA	NA	False	NA	NA	NA	10171392	10167780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_10168616_10169980
51846	chr14	+	1369	9	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	53212	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	332.504675719004	7	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTATGGTTTTGCTATTG	NA	False	NA	NA	False	NA	NA	NA	122548664	122639645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122548843_122558374_122558476_122576019_122576145_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
51847	chr9	-	815	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	56	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6385.40221912449	58	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	7156	False	NA	NA	False	NA	NA	NA	78388950	78385739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386642_78387903_78387971_78388920
51848	chr11	+	1481	4	NIC	ENSMUSG00000023723.18	novel	1332	5	NA	NA	1	0	intron_retention	FALSE	canonical	3	245	junction_1	27.3536509852382	1533	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	88095237	88102333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88095312_88096014_88096186_88100678_88101057_88101475
51849	chr5	+	1441	8	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	-11	-48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	280.475834747935	16	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTCTCTCAGTTACTTA	NA	False	NA	NA	False	NA	NA	NA	64250281	64285646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263224_64285119
51850	chr14	+	1479	14	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	4	-699	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	475.117089274539	1	59	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTATATTTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	45567296	45586463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575016_45578083_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
51851	chr1	+	1150	3	FSM	ENSMUSG00000026078.11	ENSMUST00000193073.2	944	3	-206	0	-206	0	multi-exon	FALSE	canonical	3	894	junction_1	18	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACAGTGCAAAAAATGAGA	NA	False	NA	NA	False	NA	NA	NA	39034034	39035727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_39034470_39034815_39035025_39035221
51852	chr1	+	3270	21	NNC	ENSMUSG00000016918.16	novel	5598	22	NA	NA	10	-1206	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	15.303594349041	1	64	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAACCCTGCATCTGAAC	NA	False	NA	NA	False	NA	NA	NA	12762765	12929389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_12762909_12798817_12798913_12856302_12856376_12856691_12856923_12866989_12867230_12875403_12875556_12878077_12878248_12887561_12887713_12888601_12888778_12890624_12890754_12891018_12891076_12892193_12892324_12906336_12906554_12908584_12908836_12910052_12910150_12910626_12910722_12911666_12911733_12912872_12913049_12918318_12918462_12918554_12918679_12929035
51853	chr15	-	1890	7	FSM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	60	2413	10	2	multi-exon	FALSE	canonical	3	832	junction_3	73.7437379639037	872	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTCTCCTGAGCTCT	NA	False	NA	NA	False	NA	NA	NA	83006942	83000046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
51854	chrX	-	393	1	Antisense	novelGene_ENSMUSG00000055188.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAAGCTCAGCCTGCAT	4296	False	NA	NA	False	NA	NA	NA	8014201	8013808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_8013800_8014200
51855	chr17	+	3095	13	ISM	ENSMUSG00000024201.13	ENSMUST00000025036.11	4577	23	63511	3	-3932	2	3prime_fragment	FALSE	canonical	3	94	junction_2	21.542593468135	61	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCACCTGGTCATGGCTGT	NA	False	NA	NA	False	NA	NA	NA	56696584	56709861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56696673_56700717_56701107_56701768_56701890_56703203_56703383_56703496_56703693_56703901_56703979_56704122_56704179_56704301_56704411_56706380_56706567_56706689_56706855_56706948_56707069_56708222_56708316_56708545
51856	chr16	-	3039	9	NIC	ENSMUSG00000022704.17	novel	1457	9	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	44.3163344603319	1	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACCCCGCTGTGCATTG	NA	False	NA	NA	False	NA	NA	NA	43710016	43681774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701330_43701577_43709929
51857	chr11	-	1248	3	FSM	ENSMUSG00000043284.13	ENSMUST00000168218.8	1511	3	263	0	12	0	multi-exon	FALSE	canonical	3	26	junction_1	10	160	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7846	False	NA	NA	False	NA	NA	NA	60769601	60755277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60756175_60766585_60766874_60769538
51858	chr14	+	1509	9	FSM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	13	245	-5	-245	multi-exon	FALSE	canonical	3	54	junction_3	8.98523093748847	281	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAGTGTACTTTAACTGA	NA	False	NA	NA	False	NA	NA	NA	70337566	70375410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184_70372320_70374587
51860	chr17	+	2452	9	FSM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	641	6	-262	3	multi-exon	FALSE	canonical	3	89	junction_2	16.5529453572468	1	81	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	26043241	26047698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
51862	chr8	-	696	3	ISM	ENSMUSG00000036550.17	ENSMUST00000212323.2	3277	9	36744	392	-4643	-392	3prime_fragment	FALSE	canonical	3	1196	junction_2	33	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTCTATTGATGATGGCA	NA	False	NA	NA	False	NA	NA	NA	96497317	96495818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_96496240_96496371_96496499_96497169
51863	chr7	-	1392	12	NNC	ENSMUSG00000030619.11	novel	2060	12	NA	NA	38	-87	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_9	830.067039013234	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTATTTTTGTAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	89629725	89603954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_89604272_89604738_89604813_89605551_89605622_89611463_89611570_89613936_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620747_89620787_89621438_89621532_89626104_89626258_89629619
51865	chr9	+	2790	13	FSM	ENSMUSG00000032307.17	ENSMUST00000122441.2	2081	13	9	-718	9	-3	multi-exon	FALSE	canonical	2	4	junction_1	238.508371038745	138	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTCACCTTTCCCT	NA	False	NA	NA	False	NA	NA	NA	55057375	55114810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55057686_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
51866	chr17	-	1803	1	Intergenic	novelGene_56	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	99	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTGATATAAATAGAGTT	NA	False	NA	NA	False	NA	NA	NA	17426483	17424680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17424700_17426500
51867	chr12	+	2456	6	ISM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	-400	6840	-11	1694	5prime_fragment	FALSE	canonical	3	23	junction_5	69.4682661364166	39	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGACTTTTTACAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	3285514	3293104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521
51868	chr13	+	3836	2	Antisense	novelGene_ENSMUSG00000074824.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAGTTAGAAACTTGTTT	NA	False	NA	NA	False	NA	NA	NA	67252712	67256596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_67255216_67255263
51869	chr11	+	1768	15	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	254.712773411102	2	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGCTGAGTTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	120563808	120600268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599550_120599896_120600073_120600169
51870	chr3	-	911	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	107	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4101.01506459072	3	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049902	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045418_86045743_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
51871	SIRV1	+	1496	5	NNC	SIRV1B	novel	702	3	NA	NA	-9582	-864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	75	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTTCTCCTTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	1000	10742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_+_1485_6337_6472_6557_6813_7551_7816_10383
51872	chr9	+	2607	13	NIC	ENSMUSG00000032555.11	novel	5224	28	NA	NA	-45	-14	intron_retention	FALSE	canonical	3	578	junction_2	52.5422449082641	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGCAACTTAAACTGTAT	993	False	NA	NA	False	NA	NA	NA	103209882	103227613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
51873	chr7	+	1982	15	NNC	ENSMUSG00000030534.14	novel	2413	22	NA	NA	-6581	3	intron_retention	FALSE	canonical	0	0	junction_10	46.6029691617806	26	23	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTTTGTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	79933174	79941324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935647_79935731_79935814_79936855_79936903_79937525_79937659_79938134_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
51875	chr3	+	2346	19	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	0	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	525.024761320835	1	132	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTGTTTTGTGCTTTAC	NA	False	NA	NA	False	NA	NA	NA	151916128	151938368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919741_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927045_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933815_151933883_151937513_151937660_151938031
51878	chr7	-	1062	6	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	283	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	8171.27204295635	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	98	False	NA	NA	False	NA	NA	NA	126396640	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395896_126396444
51879	chr7	-	1400	11	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	702.157133411034	3	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	NA	False	NA	NA	NA	27749491	27741131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748396_27748524_27748628_27749407
51880	chr2	+	1520	4	NIC	ENSMUSG00000026857.10	novel	1387	4	NA	NA	7	5	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	225.252944240223	47	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCCAGGCAGTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	30697975	30713034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30698378_30709640_30709845_30710460_30710714_30712373
51883	chr3	+	2542	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	315	72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2368.91683264736	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCGAACTCAACCAGAATGC	3935	False	NA	NA	False	NA	NA	NA	88487292	88495412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488973_88489518_88489833_88490008_88491193_88494171_88494250_88495187
51885	chr5	-	2284	9	NNC	ENSMUSG00000042078.15	novel	1682	15	NA	NA	-64	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6.11861912526021	2	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTACTATGGGATTTAA	NA	False	NA	NA	False	NA	NA	NA	114181006	114165029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114166526_114168157_114168248_114169621_114169676_114170765_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866
51886	chr11	-	2188	2	Antisense	novelGene_ENSMUSG00000037573.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAAGTCTCACAGCGTGT	NA	False	NA	NA	False	NA	NA	NA	94106321	94100693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_94100871_94104310
51887	chrM	+	476	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	211	-3	211	3	mono-exon	FALSE	NA	NA	NA	NA	NA	58	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	185	False	NA	NA	False	NA	NA	NA	7223	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7200_7700
51889	chr10	-	1184	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	-77	-4	27	3	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	1154	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGATCTTTTATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	31321927	31208368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
51891	chr11	-	2488	12	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	17	1790	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	242.836951726806	5	89	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGAAGCAAAAGAGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	95896749	95852471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95853353_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870493_95895048_95895110_95896284
51893	chr1	+	2275	7	FSM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	-1	4	-1	2	multi-exon	FALSE	canonical	3	675	junction_3	44.2329691017408	139	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGAGGCCTGTTGTGTCTTC	3742	False	NA	NA	False	NA	NA	NA	172139932	172147404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
51894	chr4	-	1052	4	FSM	ENSMUSG00000033379.14	ENSMUST00000133530.8	646	4	-406	0	258	0	multi-exon	FALSE	canonical	3	2536	junction_3	23.6690139681023	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	117743497	117741526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000
51895	chr17	+	1623	14	NNC	ENSMUSG00000055817.19	novel	1723	14	NA	NA	30	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	309.417605248748	711	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84013649	84100306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063110_84070389_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
51897	chr16	+	2228	14	NIC	ENSMUSG00000022945.13	novel	1922	14	NA	NA	-41	-5	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	250.801626034007	7	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGAAAAAGTGTGTGTGC	4440	False	NA	NA	False	NA	NA	NA	93680862	93702993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93681254_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
51898	chr15	-	1331	4	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	374	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	812.229989322948	2	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGACCCTGCCAGCGTTTC	NA	False	NA	NA	False	NA	NA	NA	83056419	83037700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038611_83038762_83038907_83050237_83050408_83056312
51899	chr13	+	839	1	ISM	ENSMUSG00000021669.16	ENSMUST00000109444.3	5285	17	96584	10	5019	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	49	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATGCTCACTTGCTTGAT	NA	False	NA	NA	False	NA	NA	NA	96775826	96776665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_96775800_96776700
51900	chr11	-	1629	7	Antisense	novelGene_ENSMUSG00000020877.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTAGGTGACCTGGAAG	NA	False	NA	NA	False	NA	NA	NA	96924769	96920795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_96920881_96921240_96921410_96921699_96921883_96922909_96923165_96923578_96924054_96924142_96924325_96924489
51901	chr11	-	1507	13	NNC	ENSMUSG00000078789.10	novel	2139	13	NA	NA	45	46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	106.806776470409	1	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGGGGCCGTTTGATGGA	NA	False	NA	NA	False	NA	NA	NA	75081300	75069075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75069214_75069759_75069858_75069998_75070122_75070551_75070631_75071386_75071480_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081169
51903	chr13	-	1693	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	6	-2	-2	-2	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	210	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTGTGCCTCCCCGCTT	NA	False	NA	NA	False	NA	NA	NA	55661253	55646226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
51904	chr5	+	1104	5	NNC	ENSMUSG00000029131.15	novel	1605	8	NA	NA	-1	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	867.693890436022	11	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGAGTGGGGTCTGCAG	4600	False	NA	NA	False	NA	NA	NA	29940991	29972083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955935_29956005_29970585_29970646_29971322
51905	chr17	+	1312	9	NNC	ENSMUSG00000024188.17	novel	4934	10	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	208.557995531219	23	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGACAGCTGTGTTGGGG	NA	False	NA	NA	False	NA	NA	NA	26471936	26500937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496570_26498934_26499103_26500598
51906	chr8	-	1761	3	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-22	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1476	2	103	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43760039	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749581_43757471_43757597_43759877
51907	chr8	-	4228	21	ISM	ENSMUSG00000060212.14	ENSMUST00000047239.13	7236	34	47153	0	-11314	0	3prime_fragment	TRUE	canonical	2	2	junction_9	2.04633819296811	18	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTGTCTACTGTCC	7797	False	NA	NA	False	NA	NA	NA	126577903	126478246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_126479052_126480110_126480560_126485850_126486042_126487446_126487722_126488262_126488494_126489543_126489689_126494955_126495078_126498715_126498950_126500540_126500795_126512010_126512227_126515232_126515292_126528199_126528330_126534738_126534848_126542399_126542578_126545407_126545550_126553657_126553809_126554781_126554875_126564675_126564773_126566322_126566433_126577021_126577114_126577758
51908	chr16	-	1541	7	NNC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	1036	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	131.900214809024	3	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	16941934	16931261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938920_16939159_16939416_16941375
51909	chr2	-	1597	2	ISM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	-41	-779	14	-4	intron_retention	FALSE	canonical	3	77	junction_1	0	95	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGAATACTTGAGGTGGTT	4160	False	NA	NA	False	NA	NA	NA	170191701	170189071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_170190069_170191101
51910	chr10	+	2260	5	Intergenic	novelGene_3562	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGTTGCTGGGATGACG	NA	False	NA	NA	False	NA	NA	NA	127026246	127031598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_127027422_127028476_127029227_127029598_127029676_127030281_127030503_127031561
51912	chr3	-	1665	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	5	3220	5	1226	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	463	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATAATGTCTTCAGGAA	NA	False	NA	NA	False	NA	NA	NA	53771246	53764016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
51913	chr7	-	3081	10	FSM	ENSMUSG00000003123.16	ENSMUST00000003207.11	3613	10	401	131	401	3	multi-exon	FALSE	canonical	3	24	junction_6	4.8099690715363	49	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTTTTAAAAATAGGGAG	NA	False	NA	NA	False	NA	NA	NA	25095403	25079082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_25079599_25079950_25080382_25082575_25082753_25082877_25083106_25083797_25084090_25084204_25084391_25084604_25084751_25084861_25084953_25087542_25088079_25094925
51914	chr2	+	1596	2	FSM	ENSMUSG00000037938.5	ENSMUST00000137881.2	923	2	-45	-628	1	-26	multi-exon	FALSE	canonical	3	731	junction_1	0	21	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCTATGGCTTGGAGAC	3930	False	NA	NA	False	NA	NA	NA	128971724	128976028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_128972487_128975194
51916	chr13	+	897	1	FSM	ENSMUSG00000114003.2	ENSMUST00000221154.2	781	1	-18	-98	-18	98	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	3348868	3349765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3348900_3349800
51917	chr2	-	1687	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	48	771	-3	-771	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTTTAACCTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	102903810	102852190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
51918	chr11	+	973	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	29	-100	-14	100	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	782	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTCTGGTGAATCCTGG	9096	False	NA	NA	False	NA	NA	NA	116089709	116106244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
51919	chr8	+	1005	4	NNC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	487	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	261.687260336116	146	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCATTTGTGGTACTCT	948	False	NA	NA	False	NA	NA	NA	70584483	70586402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70584659_70585061_70585168_70585236_70585301_70585742
51921	chr9	-	1838	13	FSM	ENSMUSG00000001366.15	ENSMUST00000001402.14	1850	13	9	3	9	-3	multi-exon	FALSE	non_canonical	2	18	junction_12	15.7920514464996	141	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAATATGTGTGGATGGC	NA	False	NA	NA	False	NA	NA	NA	78016338	77988786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78016283
51922	chr8	-	2136	10	FSM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	11	-28	1	28	multi-exon	FALSE	canonical	3	143	junction_9	31.8437543540021	487	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTGTGTTTGCATGTT	NA	False	NA	NA	False	NA	NA	NA	84996998	84984395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
51923	chr12	-	1270	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	-21	241	-21	71	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGTATAACATTAAT	NA	False	NA	NA	False	NA	NA	NA	79219462	79203031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
51924	chr8	+	979	4	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	-8	364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	374.862048699992	3	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATTTCATATGTG	NA	False	NA	NA	False	NA	NA	NA	107783524	107785662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107783623_107783724_107783824_107784691_107784820_107785008
51925	chrX	+	1237	14	NNC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-22	62459	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	559.539487319548	24	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTGGTCGGGCCTCGGC	NA	False	NA	NA	False	NA	NA	NA	72235790	72308995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245556_72302686_72302801_72303615_72303734_72305112_72305145_72306027_72306101_72306923_72307065_72308960
51926	chr3	+	2549	14	NNC	ENSMUSG00000027936.19	novel	2747	14	NA	NA	10	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	29.0107101218696	95	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAAACCTTTTGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	90161612	90171420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90161866_90164423_90164526_90164601_90164717_90165769_90165834_90166460_90166530_90166692_90166724_90166856_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
51929	chr17	-	2129	7	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	89	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	38.3728057642678	1	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	4968	False	NA	NA	False	NA	NA	NA	23805061	23794817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_23796137_23799085_23799207_23799744_23799837_23800030_23800245_23803793_23803913_23804411_23804549_23804934
51931	chr5	-	2575	10	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	-27	-981	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	309.854087524363	1	142	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTCTAAAAGTATGTGT	NA	False	NA	NA	False	NA	NA	NA	4154370	4132125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150140_4150281_4151189_4151355_4152927_4153027_4154133
51932	chr2	-	604	1	Intergenic	novelGene_2593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGAATTATAGAGATTTG	NA	False	NA	NA	False	NA	NA	NA	29717183	29716579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_29716600_29717200
51933	chr7	+	2015	8	NNC	ENSMUSG00000003184.16	novel	1712	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	54.1268351717915	22	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	NA	False	NA	NA	NA	44647099	44651814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44647803_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
51934	chr3	-	1908	1	Intergenic	novelGene_3087	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAATGCTATCCCAAAAG	6796	False	NA	NA	False	NA	NA	NA	19305406	19303498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_19303500_19305400
51935	chr8	+	1536	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-7	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	363.660281031624	27	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAATAAATATGAAATTTC	NA	False	NA	NA	False	NA	NA	NA	20016458	20055475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030924_20035860_20036156_20045732_20046000_20052877_20053142_20055368
51936	chr5	+	1508	9	NNC	ENSMUSG00000029131.15	novel	1018	9	NA	NA	-4	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	840.795716865875	3	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGGGTCTGCAGCCTTC	4591	False	NA	NA	False	NA	NA	NA	29940982	29972088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953438_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971705_29971747
51937	chr8	+	2877	3	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	94008	4	-25	-4	intron_retention	FALSE	canonical	3	40	junction_2	10.5	3	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTTTAGCTTTAATGCC	NA	False	NA	NA	False	NA	NA	NA	45497252	45505278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_45497592_45498067_45498206_45502878
51938	chr2	-	1376	3	NIC	ENSMUSG00000015335.17	novel	846	4	NA	NA	-8	-12	intron_retention	FALSE	canonical	3	619	junction_2	31.5	630	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAGAAAAGCCACCCAT	NA	False	NA	NA	False	NA	NA	NA	29983636	29980974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_29982078_29982416_29982554_29983500
51939	chr7	-	2161	11	NNC	ENSMUSG00000030521.12	novel	2248	11	NA	NA	40	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	295.462840303142	1	91	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTCCTGTTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	64041944	64026323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032643_64032777_64034049_64034118_64035426_64035569_64037196_64037405_64038613_64038772_64039194_64039880_64041853
51940	chr4	+	2477	6	FSM	ENSMUSG00000066026.15	ENSMUST00000084184.7	1780	6	-693	-4	-301	1	multi-exon	FALSE	canonical	3	17	junction_2	68.7185564458393	165	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTCGTTCACGTGTTT	5395	False	NA	NA	False	NA	NA	NA	144619095	144654213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_144620280_144645220_144645365_144645799_144646075_144646410_144646650_144650475_144650602_144653704
51941	chrX	-	833	1	FSM	ENSMUSG00000080241.4	ENSMUST00000116499.4	451	1	-101	-281	-101	281	mono-exon	FALSE	NA	NA	NA	NA	NA	9662	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAAGGAAACTATC	NA	False	NA	NA	False	NA	NA	NA	36807851	36807018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36807000_36807900
51942	chr7	+	1173	8	NNC	ENSMUSG00000025487.16	novel	1096	12	NA	NA	-2599	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	428.396964489331	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGCCTTGGCATTGTTC	NA	False	NA	NA	False	NA	NA	NA	140466713	140478536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140466759_140466931_140467019_140469217_140469455_140470421_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
51943	chr8	-	1278	6	NIC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	35	-16	intron_retention	FALSE	canonical	1	664	junction_2	517.649920312947	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATCTTACACAGCTG	8453	False	NA	NA	False	NA	NA	NA	85751857	85744575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85744885_85745150_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
51944	chr1	+	1973	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	782.97440792748	1	125	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724146	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724382_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742103_59743221_59743368_59743782_59743900_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
51946	chr11	+	2825	22	NNC	ENSMUSG00000020694.18	novel	703	7	NA	NA	-5419	-659	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.167096338454	2	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTGAGTGAGGAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	105064213	105172343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105064535_105075037_105075116_105098205_105098278_105099677_105099748_105100619_105100664_105101370_105101467_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662_105166775_105169943_105170047_105171910
51947	chr2	+	2986	2	Antisense	novelGene_ENSMUSG00000085513.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTTGCAAGCTTGACCT	6893	False	NA	NA	False	NA	NA	NA	177087128	177482132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177087343_177479360
51948	chr12	-	1471	10	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	87.7762306474063	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	7681	False	NA	NA	False	NA	NA	NA	110807352	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807179
51949	chrX	-	1592	2	FSM	ENSMUSG00000079641.4_ENSMUSG00000065642.3	ENSMUST00000138799.2	488	2	-16	-1088	-16	-35	multi-exon	FALSE	canonical	3	12919	junction_1	0	22	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTCTGGTTTATAAAG	NA	False	NA	NA	False	NA	NA	NA	36348835	36346207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36347742_36348777
51950	chr4	-	1289	9	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-58	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	425.901103544003	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGGAATAAATTGCTTTT	2555	False	NA	NA	False	NA	NA	NA	129229100	129203334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203665_129215709_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129225654_129225715_129228289_129228438_129229010
51951	chr2	-	1950	14	NIC	ENSMUSG00000039648.15	novel	2026	14	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	49.6595510039827	324	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCAAGGCAGCTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	30095842	30075142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082199_30082298_30084065_30084125_30095644
51952	chr1	+	1646	1	FSM	ENSMUSG00000079445.4	ENSMUST00000189618.2	1876	1	645	-415	-54	415	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGTCAATTCCTTCAGG	NA	False	NA	NA	False	NA	NA	NA	86231198	86232844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86231200_86232800
51954	chr1	-	1714	14	FSM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	-15	1714	-2	-1000	multi-exon	FALSE	canonical	3	26	junction_13	29.2690033348083	19	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCATGTTTTTCTACTT	NA	False	NA	NA	False	NA	NA	NA	183078815	183059631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
51955	chr9	-	1577	7	NIC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	20	-9	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	97.3077877436105	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTGAAGAGCAGTCAGC	8971	False	NA	NA	False	NA	NA	NA	57460026	57451547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57452222_57452477_57452687_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
51956	chr3	-	1349	9	NNC	ENSMUSG00000038975.15	novel	1169	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	311.324564361696	1	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	7076	False	NA	NA	False	NA	NA	NA	153617670	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153613379_153613691_153613842_153614481_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
51958	chr9	-	2368	9	NIC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	8	2	intron_retention	FALSE	canonical	1	5	junction_7	56.6853982521072	9	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGGTGAGCCAGTATT	NA	False	NA	NA	False	NA	NA	NA	107215541	107204906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213770_107213863_107214199
51959	chr9	-	1210	11	FSM	ENSMUSG00000061559.16	ENSMUST00000051822.13	1187	11	-26	3	-24	2	multi-exon	FALSE	canonical	3	455	junction_10	209.060852385137	71	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGCATTTGTGAACGT	5397	False	NA	NA	False	NA	NA	NA	54641827	54624445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641758
51961	chr11	-	1475	1	Intergenic	novelGene_2366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTCCAGGACAGCCAGGA	NA	False	NA	NA	False	NA	NA	NA	57684256	57682781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57682800_57684300
51962	chr14	-	1274	6	ISM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	6504	16	2435	-16	3prime_fragment	FALSE	canonical	3	694	junction_5	52.0023076411038	2	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCCTCTGCTGCTTTACC	3710	False	NA	NA	False	NA	NA	NA	54748478	54744659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335
51963	chr3	+	5086	23	NNC	ENSMUSG00000039831.17	novel	2503	20	NA	NA	18	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	5.18660066385306	17	38	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTTCTTAAATTATTTCA	NA	False	NA	NA	False	NA	NA	NA	121761495	121809791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121761607_121767527_121767765_121775463_121775599_121782137_121782235_121782560_121782634_121783957_121784007_121784633_121784772_121785510_121785576_121785982_121786094_121786179_121786263_121786390_121786580_121787228_121787367_121796190_121796352_121796884_121796998_121797893_121797999_121799303_121799403_121800424_121800565_121801192_121801382_121801602_121801741_121803474_121803708_121804898_121805230_121805713_121805823_121807749
51964	chr14	+	1620	9	NNC	ENSMUSG00000022033.10	novel	1720	8	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.253093183038	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	66043335	66055271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_66043457_66043506_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
51965	chr10	-	1804	8	FSM	ENSMUSG00000002578.19	ENSMUST00000133342.10	5150	8	147	3199	0	-328	multi-exon	FALSE	canonical	0	0	junction_6	1.27775312999988	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCCACAGCCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	128481713	128469910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128470681_128471658_128471791_128472509_128472660_128476009_128476178_128476921_128477183_128478497_128478603_128479743_128479838_128481589
51966	chr10	-	417	1	ISM	ENSMUSG00000002578.19	ENSMUST00000133342.10	5150	8	14732	0	13389	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTTTGTTCTTGAAGA	NA	False	NA	NA	False	NA	NA	NA	128467128	128466711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128466700_128467100
51967	chr4	-	1174	6	ISM	ENSMUSG00000028982.10	ENSMUST00000105686.3	1887	7	11730	436	11730	-436	3prime_fragment	FALSE	canonical	3	394	junction_5	35.4705511657206	124	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCGTGCTGGGCTGTGTTC	9469	False	NA	NA	False	NA	NA	NA	149847004	149828928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149846823
51969	chr3	+	1690	3	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	7699	2339	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTACCCAGTCTCAACAT	NA	False	NA	16	True	NA	NA	NA	90395684	90398025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90396536_90396626_90396903_90397462
51970	chr11	+	1215	10	NNC	ENSMUSG00000020708.13	novel	1394	10	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	830.797133205941	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4500	False	NA	NA	False	NA	NA	NA	106146943	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153303_106153622_106153710_106153834
51973	chr4	+	3859	22	ISM	ENSMUSG00000028456.19	ENSMUST00000207569.2	14754	41	180939	10	6101	-10	3prime_fragment	TRUE	canonical	3	15	junction_6	5.48260493890448	24	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTATAGCAGCTTTTGGAG	NA	False	NA	NA	False	NA	NA	NA	43239907	43264861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_43239962_43240224_43240389_43241006_43241158_43243234_43243304_43244701_43244792_43245467_43245597_43249456_43249582_43250216_43250303_43255474_43255602_43255820_43255918_43256128_43256273_43256775_43256854_43257275_43257354_43257846_43257936_43258149_43258303_43258420_43258545_43258650_43258708_43258868_43258950_43259461_43259610_43261681_43261775_43262976_43263137_43263299
51974	chr7	-	3223	12	NIC	ENSMUSG00000025586.18	novel	3111	12	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_11	19.84068780466	38	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTAGTTTTGTCTCTGTA	NA	False	NA	NA	False	NA	NA	NA	81105196	80996773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80998188_80999539_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006641_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104959
51975	chr10	+	1638	9	Antisense	novelGene_ENSMUSG00000019814.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	104	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTACAAAATAATCAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	13054392	13067983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_13054740_13054865_13055061_13055694_13055879_13056633_13056754_13058014_13058271_13058603_13058740_13061166_13061279_13066331_13066481_13067844
51976	chr1	-	1690	12	NNC	ENSMUSG00000046337.18	novel	1659	10	NA	NA	62	2253	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	55.6336897753199	5	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAGAAGTCAAGGCCGGA	NA	False	NA	NA	False	NA	NA	NA	36722202	36636803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36636921_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
51977	chr11	-	3372	11	FSM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	68	2	-34	-2	multi-exon	FALSE	canonical	3	112	junction_7	13.508885964431	56	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCAATGTCCTTGTTTG	2273	False	NA	NA	False	NA	NA	NA	94568273	94554678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94555736_94557023_94557358_94557924_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
51978	chr6	-	1644	9	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	15	-62	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	597.282544111244	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGTCTATATATATTGACA	NA	False	NA	NA	False	NA	NA	NA	124942460	124935840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936364_124936406_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
51979	chr2	-	2204	9	NNC	ENSMUSG00000027210.21	novel	2831	12	NA	NA	-936	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.7509868216039	4	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTTGTTAGGCTTTGG	4293	False	NA	NA	False	NA	NA	NA	115890259	115693556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_115694995_115697749_115697861_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115890202
51980	chrX	+	1441	5	NNC	ENSMUSG00000079317.11	novel	1613	5	NA	NA	-30	0	at_least_one_novel_splicesite	TRUE	non_canonical	1	93	junction_3	62.5634677747326	744	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	NA	False	NA	NA	NA	165223741	165236136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_165223836_165229786_165229899_165232783_165232928_165233623_165233711_165235132
51981	chr2	-	1632	2	Genic_Genomic	ENSMUSG00000034032.16	novel	5458	26	NA	NA	-1	-7476	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCACACCCTCGCT	496	False	NA	NA	False	NA	NA	NA	119617986	119616144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_119616500_119616709
51982	chr1	-	1144	5	NNC	ENSMUSG00000026234.13	novel	3072	12	NA	NA	-12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2618.56076881939	75	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGACTTAATACTT	NA	False	NA	NA	False	NA	NA	NA	86287098	86278219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278415_86284298_86284464_86284678_86285175_86285828_86285946_86286927
51984	chr16	-	2109	4	Antisense	novelGene_ENSMUSG00000043065.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTGTCCTATGACTTCC	NA	False	NA	NA	False	NA	NA	NA	44197257	44187293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_44188110_44190240_44191315_44192906_44193026_44197157
51986	chr8	-	1154	9	NNC	ENSMUSG00000008892.13	novel	1354	9	NA	NA	-21	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	724.542786866311	6	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAATTGTTCATCTGACTT	NA	False	NA	NA	False	NA	NA	NA	23083748	23067106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070429_23072112_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
51987	chr6	+	2738	10	NIC	ENSMUSG00000038346.19	novel	3603	12	NA	NA	-82	6	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	54.4360537752075	22	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGATGTTTTATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	124986025	125014606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124986209_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125007760_125007986_125010202_125010282_125012675_125012835_125013268
51988	chr12	+	1974	11	NIC	ENSMUSG00000047022.19	novel	2117	11	NA	NA	13	26	combination_of_known_splicesites	FALSE	canonical	3	14	junction_10	19.5642531163344	53	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGGGTCGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	57277244	57513853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57513241
51989	chr1	+	1447	12	NNC	ENSMUSG00000026187.10	novel	2549	21	NA	NA	22509	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	188.16534842289	1	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTCTTGTGTGAAGTC	NA	False	NA	NA	False	NA	NA	NA	72369094	72434108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72433018_72433127_72433866
51990	chr10	+	2678	1	Antisense	novelGene_ENSMUSG00000040006.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCGGGAAATCGCGCCTC	2475	False	NA	NA	False	NA	NA	NA	7665883	7668561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_7665900_7668600
51991	chr11	+	2663	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	40	26	-13	9	multi-exon	FALSE	canonical	3	40	junction_1	25.5	107	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAGGCTGAATTGCTGAA	NA	False	NA	NA	False	NA	NA	NA	49141378	49153831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_49141483_49142376_49142502_49151397
51992	chr2	+	2480	4	NNC	ENSMUSG00000027654.3	novel	2266	4	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	130.561181911862	106	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATTTGTGTGATTCTTTT	402	False	NA	NA	False	NA	NA	NA	158610008	158628553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_158610508_158621764_158622147_158625052_158625178_158627079
51993	chr12	+	2670	10	Intergenic	novelGene_4454	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	32	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGTGACCATAGAGAAGCT	NA	False	NA	NA	False	NA	NA	NA	101852166	101879394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_101852538_101853071_101853279_101855962_101856050_101856835_101856880_101859692_101860692_101861911_101861976_101865083_101865362_101868489_101868602_101872013_101872076_101878948
51994	chr15	-	2718	8	FSM	ENSMUSG00000001288.16	ENSMUST00000063339.14	2718	8	-1	1	-1	-1	multi-exon	FALSE	canonical	3	57	junction_4	9.19183310979738	122	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATCCGGGTGTGGATCCCT	NA	False	NA	NA	False	NA	NA	NA	102154936	102143375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102154494
51995	chr17	+	1572	13	NIC	ENSMUSG00000055817.19	novel	1723	14	NA	NA	57	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	310.167730161172	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACAGCCTTTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84013676	84100300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
51997	chr17	+	2153	3	FSM	ENSMUSG00000043311.8	ENSMUST00000061859.7	2142	3	-15	4	-2	-4	multi-exon	FALSE	canonical	0	0	junction_2	1	40	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGAGGTTCCACTCAGTG	2165	False	NA	NA	False	NA	NA	NA	35345346	35347827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35345427_35345618_35345762_35345897
51998	chr13	-	1345	7	FSM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	9	0	9	0	multi-exon	FALSE	canonical	3	121	junction_2	7.5	429	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTATGGGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	63006227	62984690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_62985095_62988084_62988205_62989599_62989738_62997190_62997332_63001787_63001881_63002717_63002881_63005941
51999	chr9	-	1488	2	ISM	ENSMUSG00000032180.12	ENSMUST00000214576.2	1013	4	393	-52	321	52	intron_retention	FALSE	canonical	3	565	junction_1	0	2	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCTGGGGTAAGCCTACT	NA	False	NA	NA	False	NA	NA	NA	21421137	21419110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21419688_21420226
52000	chr8	-	1913	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	7	-21	7	21	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	292	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTCTTTGGCACTTC	NA	False	NA	NA	False	NA	NA	NA	27618701	27613370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
52001	chr11	+	3471	2	FSM	ENSMUSG00000069874.8	ENSMUST00000108836.2	3459	2	-21	9	-1	-1	multi-exon	FALSE	canonical	2	5	junction_1	0	14	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATATAAATAGATGTATTA	1573	False	NA	NA	False	NA	NA	NA	58105832	58113596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58105997_58110289
52002	chr11	-	1233	2	FSM	ENSMUSG00000043284.13	ENSMUST00000062677.12	1457	2	224	0	-10	0	multi-exon	FALSE	canonical	3	675	junction_1	0	2414	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7573	False	NA	NA	False	NA	NA	NA	60769874	60755277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60756175_60769538
52003	chr13	-	3829	8	FSM	ENSMUSG00000021364.17	ENSMUST00000021793.15	3840	8	11	0	11	0	multi-exon	FALSE	canonical	3	52	junction_4	7.79848232226067	67	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTAGATTCTTAATTCA	7570	False	NA	NA	False	NA	NA	NA	41373870	41335856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373830
52004	chr14	-	2360	6	NNC	ENSMUSG00000022130.11	novel	1594	12	NA	NA	3	-7258	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	74.5101335390026	21	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAATCGTCCCCCAAAC	256	False	NA	NA	False	NA	NA	NA	118370153	118357145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_118357153_118357245_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
52005	chr4	-	1435	7	NNC	ENSMUSG00000028622.12	novel	1498	7	NA	NA	12	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	230.077281702378	2	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTGAGATTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	106924053	106913078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919223_106921581_106921698_106921783_106921968_106923646
52006	chr18	+	993	7	ISM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	269	2902	6	-1132	5prime_fragment	FALSE	canonical	3	5078	junction_4	254.603449832611	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCCAAGCAGGTCAAAGGA	NA	False	NA	NA	False	NA	NA	NA	77861697	77867667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526
52007	chr5	-	1510	12	NNC	ENSMUSG00000005378.18	novel	1516	13	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	301.451639420141	16	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGGTGTCCCTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	135092941	135081813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092509_135092776_135092867
52008	chr5	+	841	5	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	162	-215	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9243.33076804568	9	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCGGTCTGGATTTAT	NA	False	NA	NA	False	NA	NA	NA	115697843	115701571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699505_115701358
52009	chrX	-	1974	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	-51	11	-51	-11	multi-exon	FALSE	canonical	0	0	junction_3	41.3424721079908	256	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAATATGATTATGGTTT	NA	False	NA	NA	False	NA	NA	NA	108057061	108048150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
52010	chr19	+	825	8	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	4	596	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	364.168888830219	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTAGTGCTTGTAACTGT	NA	False	NA	NA	False	NA	NA	NA	36061119	36078325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_36061361_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208
52012	chr4	-	3037	3	ISM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	136	20852	-18	2022	5prime_fragment	FALSE	canonical	3	64	junction_2	4	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAAGCTTATTTTGTGT	-7	True	NA	NA	False	NA	NA	NA	44072642	44057677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_44060228_44066754_44066961_44072361
52013	chr7	+	922	1	NIC	ENSMUSG00000038637.16	novel	2390	12	NA	NA	6	-3199	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCTGCAACCCCATCGC	403	False	NA	NA	False	NA	NA	NA	140774075	140774997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140774100_140775000
52014	chr8	+	1792	5	ISM	ENSMUSG00000031562.17	ENSMUST00000033966.14	2072	6	1656	1	1458	-1	3prime_fragment	FALSE	canonical	3	326	junction_4	40.4505871403618	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACGTGTTTGCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	48564703	48594697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
52015	chr11	+	478	2	ISM	ENSMUSG00000034757.16	ENSMUST00000100387.11	1876	3	40	1562	28	284	5prime_fragment	FALSE	canonical	3	43	junction_1	0	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCCTGGACATCCAAGGC	NA	False	NA	NA	False	NA	NA	NA	102175804	102178501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102175915_102178133
52016	chr2	-	2214	1	NIC	ENSMUSG00000026669.15	novel	4867	20	NA	NA	-266	-1631	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	89	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGCACTGCCGGTATGAA	1660	False	NA	NA	False	NA	NA	NA	4999915	4997701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4997700_4999900
52018	chr4	-	1409	7	NNC	ENSMUSG00000028622.12	novel	1498	7	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	224.277172266818	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGATTGTCTGTGAGATAT	NA	False	NA	NA	False	NA	NA	NA	106924053	106913072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_106913302_106914643_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
52019	chr8	+	1377	9	Antisense	novelGene_ENSMUSG00000110471.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	7	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTATGCGTGCGTCCCTC	NA	False	NA	96	True	NA	NA	NA	84298328	84321102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_84298567_84298643_84298690_84298862_84298953_84299029_84299579_84299656_84299769_84299841_84299953_84300039_84300085_84301106_84301156_84320965
52021	chr14	+	2565	15	NNC	ENSMUSG00000022019.17	novel	2657	14	NA	NA	-14	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	35.8747822293042	1	67	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATTGTTATATAAGTTG	NA	False	NA	NA	False	NA	NA	NA	87654060	87782924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724596_87724724_87743194_87744043_87749080_87749207_87776832_87776958_87782692_87782765_87782855
52023	chr8	+	2945	7	NNC	ENSMUSG00000031568.17	novel	2921	8	NA	NA	-24	0	intron_retention	FALSE	non_canonical	0	0	junction_6	72.1795600491503	224	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTATATGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	47986674	48005860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47986979_47990313_47990395_47995726_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48003726
52024	chr17	+	1511	10	NIC	ENSMUSG00000000127.16	novel	2948	15	NA	NA	-16	18344	combination_of_known_junctions	FALSE	canonical	1	4	junction_9	52.5013815220933	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCGACAGCAGGAAGGTAG	NA	False	NA	NA	False	NA	NA	NA	64170993	64248736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64248577
52026	chr2	-	1534	1	Genic_Genomic	ENSMUSG00000026966.7	novel	NA	NA	NA	NA	-1	155	mono-exon	FALSE	NA	NA	NA	NA	NA	153	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCCAGAACACAAACCACTT	NA	False	NA	NA	False	NA	NA	NA	25162429	25160895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_25160900_25162400
52027	chr17	-	2100	13	ISM	ENSMUSG00000063011.8	ENSMUST00000075884.8	2114	16	975	5	688	-2	3prime_fragment	FALSE	canonical	3	43	junction_12	9.24061085041941	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGATGTCCTGTAGTGT	7630	False	NA	NA	False	NA	NA	NA	25972313	25967591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915
52028	chr11	+	1199	3	NNC	ENSMUSG00000020849.14	novel	599	5	NA	NA	3	-265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5640	1	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGCCTCCATCCTTTA	3038	False	NA	NA	False	NA	NA	NA	75623741	75656406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642769_75655445
52029	chr4	+	1800	16	NNC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	-154	-1910	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	236.810716724467	2	69	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGCAAAAACAGGAGAAGA	4085	False	NA	NA	False	NA	NA	NA	148647377	148664868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657422_148657567_148657667_148660201_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664819
52033	chr15	+	2225	1	NIC	ENSMUSG00000022257.5	novel	1902	7	NA	NA	8809	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGAAAACAGTCGTGGCT	NA	False	NA	NA	False	NA	NA	NA	34282214	34284439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_34282200_34284400
52034	chr8	+	2372	1	ISM	ENSMUSG00000003847.17	ENSMUST00000169453.8	13380	15	83666	9	21316	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	31	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGCAGTGGGTGGCA	NA	False	NA	NA	False	NA	NA	NA	108103767	108106139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_108103800_108106100
52035	chr3	+	1698	3	NIC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	3038	196	intron_retention	FALSE	canonical	3	741	junction_1	32	155	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGAACTTGGCCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	102969341	102971911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102969850_102970645_102971474_102971549
52036	chr17	+	2680	12	NNC	ENSMUSG00000023952.14	novel	2929	12	NA	NA	163	6584	intron_retention	FALSE	non_canonical	0	0	junction_11	18.8937875136662	53	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGGGAGGATAGATTTT	NA	False	NA	NA	False	NA	NA	NA	46474406	46486880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071_46480288_46486864
52037	chr3	-	1559	12	NNC	ENSMUSG00000068921.15	novel	1409	13	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	347.211965174489	2	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88858457	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88836633_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
52038	chr2	+	1800	3	FSM	ENSMUSG00000027510.18	ENSMUST00000155512.8	2281	3	477	4	-48	-1	multi-exon	FALSE	canonical	3	757	junction_2	26	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAAAAAGGTGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	172864182	172876517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172864709_172865119_172865175_172875298
52039	chr3	-	1280	2	Antisense	novelGene_ENSMUSG00000015749.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGCAACAATGTTTTAA	1622	False	NA	NA	False	NA	NA	NA	95854252	95852878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95854089_95854182
52040	chr5	+	2396	14	Antisense	novelGene_ENSMUSG00000055204.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACATGGTTGAGCCATC	NA	False	NA	NA	False	NA	NA	NA	90400649	90433470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_90400883_90401360_90401804_90402500_90402671_90406292_90406409_90407942_90408043_90411119_90411281_90411843_90412030_90412490_90412702_90413290_90413433_90416189_90416335_90416494_90416611_90426103_90426253_90432901_90433002_90433346
52041	chr8	-	1652	1	ISM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	27624	3	27593	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTCCCAGTGTCTTCCGC	NA	False	NA	NA	False	NA	NA	NA	111999230	111997578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_111997600_111999200
52042	chr11	-	1603	2	ISM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	630	-3	584	3	3prime_fragment	FALSE	canonical	3	10036	junction_1	0	10	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGTGTTGGTTTGCAC	NA	False	NA	NA	False	NA	NA	NA	70544840	70542672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70543048_70543612
52043	chr8	-	2378	10	NNC	ENSMUSG00000031672.9	novel	2530	10	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	199.952772201615	1	141	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGTCTGCTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	96615026	96590762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96591874_96593444_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
52044	chr6	-	1140	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	83	5	83	-5	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTCGGGCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	125471671	125437233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
52045	chr8	-	1980	2	Antisense	novelGene_ENSMUSG00000031562.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTACATAGCAGCTTGGGA	NA	False	NA	NA	False	NA	NA	NA	48594692	48592570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_48593385_48593526
52046	chr13	+	694	8	NNC	ENSMUSG00000021559.15	novel	4072	10	NA	NA	-55	49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	22.1257998817707	1	12	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATTCAAGAAGTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	60844171	60869640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_60844267_60864491_60864631_60865827_60865958_60866115_60866165_60866250_60866278_60867423_60867577_60867922_60867971_60869587
52053	chrX	-	1971	13	Antisense	novelGene_ENSMUSG00000031337.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACGCTCGACCCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	70346959	70258625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_70258687_70274994_70275064_70276675_70276748_70278454_70278552_70303329_70303430_70328202_70328287_70330751_70330906_70335358_70335542_70339767_70339954_70343171_70343381_70345339_70345431_70346104_70346221_70346410
52054	chr11	+	1215	11	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	777.505504803664	3	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	NA	False	NA	NA	NA	106146979	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153081_106153276_106153329_106153406_106153518_106153622_106153710_106153834
52055	chr7	+	987	5	FSM	ENSMUSG00000011658.17	ENSMUST00000209132.2	853	5	9	-143	-4	143	multi-exon	FALSE	canonical	3	96	junction_1	10.3531396204243	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATTAAAGGCGTGCTCCA	NA	False	NA	NA	False	NA	NA	NA	44545525	44547393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943
52056	chr9	-	1260	6	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	-15	-1	intron_retention	FALSE	canonical	3	162	junction_4	383.125775692526	110	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTATGGGTCTTGCTTGCT	6316	False	NA	NA	False	NA	NA	NA	57065576	57062321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57062565_57062695_57062873_57063185_57063576_57063799_57063840_57064033_57064423_57065555
52058	chr16	-	3846	1	ISM	ENSMUSG00000036304.15	ENSMUST00000231700.2	5751	5	10904	9	10163	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	29	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGAAAACTGTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	43789250	43785404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_43785400_43789200
52059	chr3	+	1952	7	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-9	18052	3	330	5prime_fragment	FALSE	canonical	3	60	junction_5	29.9146935282461	125	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGATTTTAGTAATGG	NA	False	NA	NA	False	NA	NA	NA	135053809	135080792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
52060	chr11	+	1336	5	FSM	ENSMUSG00000000581.9	ENSMUST00000156784.2	684	5	-42	-610	-42	610	multi-exon	TRUE	canonical	2	9	junction_1	280.161895160637	14	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTTGTATGTCCTGACT	7383	False	NA	NA	False	NA	NA	NA	17207645	17217234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_17208008_17212647_17212795_17213608_17213676_17213950_17214007_17216530
52061	chr15	+	1330	8	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-25	-15	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	148.535435200507	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTCTCCTTTTGAACCC	NA	False	NA	NA	False	NA	NA	NA	102427208	102432094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427280_102427556_102427727_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
52062	chr2	+	3522	6	Antisense	novelGene_ENSMUSG00000034800.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTGCGCCTGCGCGAAGA	NA	False	NA	NA	False	NA	NA	NA	127416934	127426602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_127419868_127420527_127420636_127422814_127422943_127423394_127423466_127423777_127424007_127426549
52064	chr4	+	824	4	NIC	ENSMUSG00000036073.19	novel	1007	8	NA	NA	920	-19	intron_retention	FALSE	canonical	3	302	junction_3	14.8996644257513	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAACCATGTTTTCTGAC	924	False	NA	NA	False	NA	NA	NA	41757181	41758676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41757593_41757694_41757779_41758083_41758239_41758502
52065	chr1	-	1715	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	-6	-4	-6	4	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTATAGCTTGGTGTACG	NA	False	NA	NA	False	NA	NA	NA	58463231	58451154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
52066	chr9	+	1704	8	NNC	ENSMUSG00000032387.16	novel	569	5	NA	NA	254	-290	at_least_one_novel_splicesite	FALSE	canonical	1	31	junction_1	562.733742818149	5	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTCAGATAAGTTTAATG	NA	False	NA	NA	False	NA	NA	NA	65538621	65567518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65538968_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
52067	chr10	+	2071	7	FSM	ENSMUSG00000020009.14	ENSMUST00000020188.13	2112	7	41	0	32	0	multi-exon	FALSE	canonical	3	26	junction_4	3.14907393794853	62	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTTGGATATTCATTTA	NA	False	NA	NA	False	NA	NA	NA	19467737	19485977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_19467946_19473163_19473279_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
52068	chr11	+	1632	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	57	411	13	-411	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGTACGTGTAACTTGAA	3048	False	NA	NA	False	NA	NA	NA	75623751	75656260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
52069	chr2	+	1132	2	ISM	ENSMUSG00000027475.10	ENSMUST00000028977.7	5635	9	20	16114	20	-16114	5prime_fragment	FALSE	canonical	3	30	junction_1	0	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGCCAACCGTGCCAAAAA	7833	False	NA	NA	False	NA	NA	NA	153133352	153159196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_153133425_153158136
52070	chr11	-	2974	2	FSM	ENSMUSG00000043648.8	ENSMUST00000125307.2	948	2	-34	-1992	-31	1186	multi-exon	FALSE	canonical	3	85	junction_1	0	228	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTGCTAAATTTAGTAG	NA	False	NA	NA	False	NA	NA	NA	59678502	59673536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59676052_59678043
52071	chr11	-	1409	2	ISM	ENSMUSG00000035086.14	ENSMUST00000136535.8	1002	4	3570	-626	2027	0	3prime_fragment	FALSE	canonical	3	563	junction_1	0	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	NA	False	NA	NA	NA	101181297	101179087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_101179808_101180608
52072	chr4	+	1369	9	NNC	ENSMUSG00000028863.14	novel	1054	8	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	132.994360782704	752	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCAGCTGCCTCTTTGGC	NA	False	NA	NA	False	NA	NA	NA	124978960	125003685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_124997222_124997364_125001444_125001503_125002115_125002150_125003091
52073	chr4	-	1646	9	NIC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	221	junction_4	16.7163841784041	53	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACTGGGCTGATTGTTT	NA	False	NA	NA	False	NA	NA	NA	117539183	117531887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029
52075	chr14	+	931	3	NIC	ENSMUSG00000012405.17	novel	1922	4	NA	NA	-13	0	intron_retention	FALSE	canonical	3	8735	junction_1	3718.5	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATTTCTGCTTAAAGGT	NA	False	NA	NA	False	NA	NA	NA	4198712	4200731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_4198738_4199235_4199790_4200379
52076	chr16	-	3086	16	FSM	ENSMUSG00000022892.12	ENSMUST00000005406.12	3176	16	85	5	31	2	multi-exon	FALSE	canonical	2	2	junction_10	15.6480740738987	1	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGGCAAGACGTTTCTT	7416	False	NA	NA	False	NA	NA	NA	84970561	84751335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
52077	chr1	-	1286	9	NNC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	86.6804476222868	324	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGATCTAGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	194813868	194786107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_194786216_194789125_194789231_194793387_194793498_194797013_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
52078	chr6	-	3200	4	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5444	-18	intron_retention	FALSE	non_canonical	0	0	junction_3	61.0791835789139	8	40	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTTTGTTCACCAAGGTA	2728	False	NA	NA	False	NA	NA	NA	83675081	83669805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672627_83672710
52079	chr12	-	2796	20	FSM	ENSMUSG00000021069.18	ENSMUST00000071250.13	2825	20	19	10	19	-2	multi-exon	FALSE	canonical	2	8	junction_17	3.93154724147013	41	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCAATAGCCTGCTTGG	6219	False	NA	NA	False	NA	NA	NA	70274438	70237594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_70237931_70240512_70240580_70241006_70241142_70242277_70242486_70243744_70243887_70243991_70244051_70244171_70244320_70244433_70244536_70245203_70245319_70246415_70246580_70246905_70247053_70248042_70248136_70248618_70248763_70253135_70253219_70254444_70254557_70257800_70257933_70263336_70263441_70266362_70266442_70269598_70269701_70274114
52080	chr7	+	1994	13	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	503.363437289599	65	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	26	False	NA	NA	False	NA	NA	NA	5065234	5082932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180_5082530_5082620
52081	chr9	+	1659	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	7	1014	1	-1014	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	377	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTGGCTTCTGTGATGA	7183	False	NA	NA	False	NA	NA	NA	65368235	65394738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
52082	chr8	+	2380	10	Antisense	novelGene_ENSMUSG00000037103.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGTAGGAGAGGACATAG	NA	False	NA	102	True	NA	NA	NA	84823702	84829457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_84824137_84824364_84824482_84824564_84824672_84824828_84824912_84824988_84825119_84825206_84825298_84825381_84825817_84828297_84828475_84828559_84828701_84828792
52084	chr11	+	1510	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	75	41	75	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTTTCTGGACAGTCAAA	NA	False	NA	NA	False	NA	NA	NA	120653694	120655204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653700_120655200
52089	chr3	+	1600	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	125	5	125	-4	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	425	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATACGTCCTTTTGCTC	NA	False	NA	NA	False	NA	NA	NA	68479702	68533792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
52090	chr3	-	1876	9	ISM	ENSMUSG00000027932.15	ENSMUST00000132041.2	2016	10	370	20	-313	-20	intron_retention	FALSE	canonical	3	73	junction_6	21.5895663458069	122	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAATAAACAGCTGGAGCT	NA	False	NA	NA	False	NA	NA	NA	90296601	90292567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996
52091	chrX	+	2053	5	NIC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	-1508	-5	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	19.6086715511276	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGCTATGGACTGGATTT	NA	False	NA	NA	False	NA	NA	NA	164959889	164973501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_164960076_164961529_164961639_164961787_164961827_164963348_164963806_164972239
52092	chr4	-	1224	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	2410	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127220544	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219545_127219837
52094	chr18	-	2480	6	NIC	ENSMUSG00000063889.17	novel	1996	8	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	27.7459907013608	72	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGCCTGTGTGTATGT	-5	True	NA	NA	False	NA	NA	NA	3337574	3266357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3268130_3273421_3273579_3295039_3295183_3295321_3295417_3325360_3325479_3337379
52095	chr10	-	1048	9	NNC	ENSMUSG00000038510.13	novel	1296	10	NA	NA	2	-67	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	405.658107277545	31	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTTTGGATCATACTC	6593	False	NA	NA	False	NA	NA	NA	40122996	40099489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_40099917_40101292_40101438_40103554_40103648_40110852_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
52096	chr1	-	1268	2	Genic_Genomic	ENSMUSG00000100309.2	novel	951	1	NA	NA	-41	372	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAACCTTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	55484224	55482860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_55483705_55483800
52097	chr17	-	1437	3	NNC	ENSMUSG00000092074.3	novel	3541	4	NA	NA	7	-2550	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1289.5	192	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6367686	6360818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6361136_6364151_6365234_6367648
52100	chr3	+	4255	21	NNC	ENSMUSG00000027665.14	novel	8917	20	NA	NA	-215	938	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_2	13.8524366087703	38	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGAAACTATCATTAATA	NA	False	NA	NA	False	NA	NA	NA	32451604	32517915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32451642_32490278_32490707_32491266_32491477_32491965_32492217_32493852_32494099_32494775_32494862_32496874_32496981_32497727_32497881_32497963_32498099_32502103_32502229_32503671_32503754_32504057_32504223_32504410_32504515_32505904_32506077_32508009_32508117_32508527_32508650_32510241_32510321_32514010_32514182_32515628_32515747_32515845_32515998_32516709
52104	chr13	-	1235	8	NNC	ENSMUSG00000069089.9	novel	763	2	NA	NA	11	1789	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.349329355931	22	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAACCCCCACAGATTT	NA	False	NA	NA	False	NA	NA	NA	100867426	100851707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100852325_100852996_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
52105	chr5	+	3242	18	NIC	ENSMUSG00000029439.15	novel	3313	18	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_2	26.6125604499534	1	61	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGGGCTCTCCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	129578308	129648448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129578661_129581046_129581170_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
52106	chr11	+	1815	3	Antisense	novelGene_ENSMUSG00000055333.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCGAAAAGGAAGGCTCC	NA	False	NA	NA	False	NA	NA	NA	55201574	55227385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_55203083_55205340_55205542_55227279
52107	chr11	-	2231	15	NNC	ENSMUSG00000020923.18	novel	3286	20	NA	NA	-12	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	208.087795442801	1	75	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCGGCTGCCGTCTCTGTT	9124	False	NA	NA	False	NA	NA	NA	102207543	102196816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102197111_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
52108	chr15	-	2116	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	-5	108	-4	6	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	1	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAGACTATTTAAAAATT	NA	False	NA	NA	False	NA	NA	NA	79489314	79445805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
52110	chr11	-	1459	12	NNC	ENSMUSG00000064090.15	novel	1642	12	NA	NA	77523	84114	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAATGGCCGCCGCACATG	NA	False	NA	NA	False	NA	NA	NA	26421842	26337207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_26337309_26347743_26347803_26349646_26349708_26372405_26372503_26384429_26384499_26409683_26409835_26418332_26418417_26418669_26418717_26418799_26418883_26419651_26419767_26420874_26420946_26421321
52111	chr14	+	1702	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	-135	-2	-32	2	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	455	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCTCTTCACATCTCAT	6432	False	NA	NA	False	NA	NA	NA	70782658	70786375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
52113	chr19	-	1102	7	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1229.34513958539	56	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3764	False	NA	NA	False	NA	NA	NA	7017334	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998376_7006556_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
52114	chr9	-	1413	5	NNC	ENSMUSG00000001348.16	novel	1356	5	NA	NA	962	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	104.376721542689	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	5998	False	NA	NA	False	NA	NA	NA	22046025	22038022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22045889
52115	chr7	-	2759	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	66	12	-5	-12	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	235	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGACATTTATGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	126613727	126586043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
52116	chr17	-	2863	7	NNC	ENSMUSG00000073402.12	novel	1182	7	NA	NA	162	117409	intron_retention	TRUE	non_canonical	0	0	junction_1	0.471404520791032	3	89	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGATTTGTTTATGTATG	NA	False	NA	NA	False	NA	NA	NA	36478574	36357925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36358400_36390168_36390178_36436563_36437367_36452481_36452616_36475447_36476365_36476490_36476767_36478324
52117	chr7	-	2029	20	NNC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	375	-7	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_11	15.2344557716802	125	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATGACTTCACAGGATGA	9453	False	NA	NA	False	NA	NA	NA	44853941	44833054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373_44839452_44842599_44842651_44842882_44843001_44843383_44843546_44843773_44843841_44844952_44845018_44845391_44845579_44845930_44846036_44849668_44849810_44853866
52118	chrX	+	1353	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	25	217	7	-217	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	1	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGAGTTGTAAGCTTTT	NA	False	NA	NA	False	NA	NA	NA	74557929	74578331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
52120	chr2	+	3239	20	FSM	ENSMUSG00000004085.15	ENSMUST00000090824.12	3334	20	95	0	4	0	multi-exon	FALSE	canonical	2	3	junction_12	12.7949955590981	23	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATTGTATGGTGGCTA	3329	False	NA	NA	False	NA	NA	NA	72116075	72272954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813_72219921_72228633_72228770_72240492_72240538_72242273_72242305_72242414_72242555_72246884_72246948_72248298_72248392_72263711_72263829_72265574_72265650_72268545_72268697_72271575
52122	chr2	-	2288	8	ISM	ENSMUSG00000039117.17	ENSMUST00000041618.13	4416	15	47252	4	-39	-4	3prime_fragment	FALSE	canonical	3	74	junction_7	14.8845900315784	88	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTTGTCACGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	179571187	179553948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_179555400_179562944_179563065_179563703_179563761_179564746_179564873_179565771_179565903_179566209_179566380_179568008_179568124_179571069
52125	chr4	+	1220	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	48	-246	48	246	multi-exon	FALSE	canonical	3	445	junction_1	0	1114	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGTGAGAAGGGGTCACC	NA	False	NA	NA	False	NA	NA	NA	127137624	127141848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_127137692_127140695
52126	chr16	+	1627	11	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1	-119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	880.11038512223	2	73	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTGTGAACTGGACCCT	6063	False	NA	NA	False	NA	NA	NA	22926517	22932561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22927999_22928751_22928904_22928983_22929094_22929329_22929462_22929901_22929960_22930240_22930330_22930566_22930647_22931916
52127	chr10	-	3397	3	ISM	ENSMUSG00000020256.15	ENSMUST00000020497.14	6027	23	40678	22	2555	-22	3prime_fragment	FALSE	canonical	3	64	junction_1	5.5	4	62	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAATAAAAAATATTCTAAA	8536	False	NA	NA	False	NA	NA	NA	83329326	83323335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_83326499_83328338_83328539_83329292
52128	chr7	+	3234	1	NIC	ENSMUSG00000033961.17	novel	2594	5	NA	NA	-14	-351	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATCCCAGTATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	12711805	12715039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12711800_12715000
52129	chr5	+	3341	5	NNC	ENSMUSG00000066964.3	novel	1827	5	NA	NA	3565	1814	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3.08220700148449	26	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACCATGGAGTGGGCC	NA	False	NA	NA	False	NA	NA	NA	113378339	113388943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_113378771_113382212_113382430_113383784_113383924_113385894_113388063_113388557
52130	chr14	+	481	1	NIC	ENSMUSG00000033589.5	novel	1444	7	NA	NA	-36	-1164	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGTGGAAACTGGGGA	6531	False	NA	NA	False	NA	NA	NA	70782757	70783238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_70782800_70783200
52131	chr14	+	1278	6	ISM	ENSMUSG00000033589.5	ENSMUST00000226563.2	1444	7	1153	-249	223	-83	3prime_fragment	FALSE	canonical	3	251	junction_1	34.2426634478102	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCATGTTTCGTGTTGGTG	7617	False	NA	NA	False	NA	NA	NA	70783843	70786290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_70783990_70784369_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
52132	chr9	+	1017	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2028.1482249141	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTTATGGTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	119956853	119960621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957663_119958205_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
52133	chr13	+	2653	1	ISM	ENSMUSG00000087370.4	ENSMUST00000129449.3	7168	3	32475	12	32475	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	32	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAAAAACTATACAGTGC	NA	False	NA	NA	False	NA	NA	NA	41792166	41794819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_41792200_41794800
52134	chr9	+	867	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	6555.44183351916	294	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64080657	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084643_64085696
52135	chr7	+	1980	12	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	-5	552	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	88.9139243899021	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6875	False	NA	NA	False	NA	NA	NA	140711263	140736067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734850_140734910_140735246
52136	chr8	-	1424	7	NNC	ENSMUSG00000052906.8	novel	2808	8	NA	NA	0	-1167	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	93.7563331194219	3	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTCTTAAGGTATCTTT	4670	False	NA	NA	False	NA	NA	NA	34131995	34110780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_34111729_34113189_34113265_34116351_34116394_34123608_34123656_34125316_34125388_34128507_34128631_34131877
52141	chr2	-	2167	1	NIC	ENSMUSG00000056436.5	novel	655	4	NA	NA	50	-4292	mono-exon	FALSE	NA	NA	NA	NA	NA	19	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATATTTGGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	76190744	76188577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_76188600_76190700
52144	chr16	+	1823	1	Genic_Genomic	ENSMUSG00000116123.2	novel	NA	NA	NA	NA	2561	819	mono-exon	FALSE	NA	NA	NA	NA	NA	58	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACCCAAACCCAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	8979194	8981017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_8979200_8981000
52145	chr17	+	751	1	Antisense	novelGene_ENSMUSG00000057789.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCCCTCCATGTTCTGA	NA	False	NA	NA	False	NA	NA	NA	27238785	27239536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_27238800_27239500
52146	chr14	+	1664	13	FSM	ENSMUSG00000004561.15	ENSMUST00000164902.8	1461	13	-70	-133	0	0	multi-exon	FALSE	canonical	0	0	junction_8	49.8556248916141	469	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	52122332	52129325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823
52147	chr14	-	1261	10	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5079	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	109.915568045502	20	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607998	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
52148	chr15	+	1767	10	Antisense	novelGene_ENSMUSG00000002524.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAGGCAGGAAGGAAATA	1006	False	NA	NA	False	NA	NA	NA	75942063	75949551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_75942479_75942599_75942830_75943024_75943166_75943313_75943506_75943588_75943801_75944079_75944174_75944254_75944424_75947396_75947496_75947570_75947687_75949452
52149	chr1	+	1582	7	NIC	ENSMUSG00000026096.15	novel	1868	8	NA	NA	-10	-18	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	52.920275467495	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAAACCAGTCAA	NA	False	NA	NA	False	NA	NA	NA	53352802	53365308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53362325_53362430_53365162
52150	chr15	+	1427	15	NNC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-9	-72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	195.829593248408	2	38	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGGATTATTAATACATT	2114	False	NA	NA	False	NA	NA	NA	102379078	102407244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381719_102381862_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923_102406973_102407136
52151	chr6	+	1735	3	ISM	ENSMUSG00000001761.8	ENSMUST00000001812.5	3779	12	23224	11	23224	-11	3prime_fragment	FALSE	canonical	3	85	junction_1	4	76	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAAGCTCATGCGTGTTT	NA	False	NA	NA	False	NA	NA	NA	29758916	29761353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_29759014_29759482_29759618_29759850
52152	chr14	+	1935	2	NIC	ENSMUSG00000004562.17	novel	1429	9	NA	NA	1666	-1345	intron_retention	FALSE	canonical	3	26	junction_1	0	2	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGGAGGATTTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	52236875	52240075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52238477_52239741
52154	chr13	+	1917	12	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74239	-36	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	26.2382598697348	9	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATATTTGCCTCAATAA	NA	False	NA	NA	False	NA	NA	NA	21120563	21208386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_21120623_21121900_21121998_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
52155	chr17	+	2608	3	NIC	ENSMUSG00000024082.6	novel	729	4	NA	NA	-49	944	intron_retention	FALSE	canonical	3	436	junction_2	14.5	2	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATGCCGAATAACTGTA	NA	False	NA	NA	False	NA	NA	NA	79244695	79250639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_79246051_79247023_79247135_79249497
52156	chr15	-	2993	5	NNC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	9	0	intron_retention	FALSE	non_canonical	0	0	junction_4	187.243658103552	1	180	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	NA	False	NA	NA	NA	79816732	79800007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807765_79816641
52157	chr3	-	4030	2	NIC	ENSMUSG00000048796.8	novel	4058	3	NA	NA	-12	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	27	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTATGCTCTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	108108162	108103088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108107032_108108075
52158	chr4	-	1814	3	FSM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	58	3	58	-3	multi-exon	FALSE	canonical	3	173	junction_2	4	272	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACCTGACCTCATTCAG	9858	False	NA	NA	False	NA	NA	NA	141811557	141758305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141759406_141764715_141765245_141811372
52159	chr1	+	1343	9	NNC	ENSMUSG00000116048.2	novel	3192	12	NA	NA	26	-5835	at_least_one_novel_splicesite	FALSE	canonical	1	21	junction_2	427.238498236055	9	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGCATTTCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	93406740	93431620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93418878_93418996_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156
52160	chr8	+	3738	1	Intergenic	novelGene_1624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGCCAAACATATTCAA	NA	False	NA	NA	False	NA	NA	NA	43568400	43572138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43568400_43572100
52161	chr2	+	1618	8	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-63	-2	at_least_one_novel_splicesite	FALSE	canonical	3	170	junction_7	884.180653809745	1	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTGTGTATTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	130118156	130121230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
52162	chr13	+	921	9	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	12	-2047	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	2025.33527702823	13	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGTTTTTAAGAGTAAA	NA	False	NA	NA	False	NA	NA	NA	14787836	14800174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14795515_14795585_14798182_14798257_14799787_14799846_14799933
52163	chr8	+	2086	9	NNC	ENSMUSG00000003808.19	novel	1708	13	NA	NA	28	-10	intron_retention	FALSE	non_canonical	0	0	junction_6	324.076669169504	7	61	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTAGGACTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	85583676	85595875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85583811_85587534_85587587_85587755_85588060_85590686_85590780_85590859_85590989_85591065_85591186_85594005_85594072_85594160_85594968_85595494
52164	chr7	+	2525	13	FSM	ENSMUSG00000038637.16	ENSMUST00000070458.11	2502	13	-19	-4	0	-2	multi-exon	FALSE	canonical	3	14	junction_2	5.23609269080167	51	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTGGCCTGGCTGACC	397	False	NA	NA	False	NA	NA	NA	140774069	140789966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140774531_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
52166	chr17	-	2069	2	Intergenic	novelGene_113	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_1	0	72	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGAACGCAGTGTTGTC	7617	False	NA	NA	False	NA	NA	NA	28762658	28760158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_28760443_28760873
52167	chr6	+	2195	16	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	8	-13	combination_of_known_splicesites	FALSE	canonical	2	2	junction_10	224.654064928478	2	93	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTAAACATATCCAGTG	NA	False	NA	NA	False	NA	NA	NA	40302428	40373683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
52168	chr5	-	448	3	NNC	ENSMUSG00000032959.13	novel	1240	4	NA	NA	-14	-89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1321.5	86	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTCAGTGGGGTAGG	NA	False	NA	NA	False	NA	NA	NA	117425662	117420807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117421004_117424246_117424310_117425473
52169	chr13	-	303	1	ISM	ENSMUSG00000050954.16	ENSMUST00000176176.8	2162	6	25475	12	18978	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTCTCAACAATTCCAT	NA	False	NA	NA	False	NA	NA	NA	48641437	48641134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_48641100_48641400
52170	chr11	-	3377	8	NIC	ENSMUSG00000063652.11	novel	3461	10	NA	NA	22	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	1.72614942479922	10	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAATAGCAAC	NA	False	NA	NA	False	NA	NA	NA	53871136	53840796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_53842182_53843826_53844010_53845513_53845729_53846810_53846921_53848799_53848927_53850029_53850202_53851108_53851448_53870290
52172	chr7	+	1600	4	Antisense	novelGene_ENSMUSG00000030881.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGACACCATCACCTGCTG	NA	False	NA	NA	False	NA	NA	NA	105285706	105288286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105286204_105286334_105287248_105287415_105287534_105288214
52173	chr7	+	1509	6	NNC	ENSMUSG00000025510.15	novel	1708	8	NA	NA	11	2	intron_retention	FALSE	non_canonical	0	0	junction_4	111.474481384755	14	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGAATCAGCTTGCTGACA	NA	False	NA	NA	False	NA	NA	NA	141047316	141051388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049551_141050251_141050382_141050463
52174	chr19	-	1418	10	NNC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	81.5340571119566	745	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9963	False	NA	NA	False	NA	NA	NA	6117870	6112850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116673_6116997_6117053_6117152_6117350_6117698
52175	chr19	-	1381	6	NIC	ENSMUSG00000036748.17	novel	1833	9	NA	NA	0	-8	intron_retention	FALSE	canonical	3	390	junction_5	261.346819379919	13	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAAGGAAGGTATATGCT	5862	False	NA	NA	False	NA	NA	NA	46327059	46318992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46319274_46319358_46319906_46319984_46320258_46320351_46320496_46321056_46321141_46327007
52176	chr19	+	541	3	NNC	ENSMUSG00000071644.11	novel	1272	5	NA	NA	4918	-300	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4932.5	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTCCTGTCCTGCC	701	False	NA	NA	False	NA	NA	NA	8954685	8955543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8954855_8954948_8955085_8955307
52177	chr10	-	638	1	Antisense	novelGene_ENSMUSG00000078348.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCGCCACGCAAAACCTCA	NA	False	NA	NA	False	NA	NA	NA	12884908	12884270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_12884300_12884900
52178	chr15	+	1946	15	NNC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	39.3018797909469	3	35	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTCTTTGTGTTTTAT	3154	False	NA	NA	False	NA	NA	NA	76460609	76480016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477672_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
52179	chr1	+	2025	13	FSM	ENSMUSG00000025911.15	ENSMUST00000027044.15	2022	13	9	-12	9	12	multi-exon	FALSE	canonical	0	0	junction_3	21.4416197045735	138	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTGTACTGAGTATTT	NA	False	NA	NA	False	NA	NA	NA	9618288	9647138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_9618377_9620131_9620170_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
52180	chr13	-	2682	5	FSM	ENSMUSG00000021594.12	ENSMUST00000091514.6	2644	5	-39	1	-39	-1	multi-exon	FALSE	canonical	2	14	junction_3	7.15454401062709	65	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTATTGTTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	69759600	69721568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_69723316_69734703_69734855_69743034_69743137_69748349_69748517_69759085
52181	chrX	+	1613	12	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	235.619422791701	1	56	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	56454513	56534133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485024_56513777_56513890_56517713_56517886_56533944
52182	chr4	-	2433	3	NNC	ENSMUSG00000046623.9	novel	1445	2	NA	NA	0	9967	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	26	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCTTTAAGGCAAACACA	4504	False	NA	NA	False	NA	NA	NA	127247874	127234911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127236174_127245152_127246275_127247825
52183	chr17	+	2505	4	FSM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	37	-8	3	0	multi-exon	FALSE	canonical	3	12	junction_3	7.40870359029762	24	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTTTTGTTTTGCTTAC	NA	False	NA	NA	False	NA	NA	NA	44389772	44397458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_44389874_44391537_44392402_44393634_44393812_44396095
52184	chr16	+	1332	10	Antisense	novelGene_ENSMUSG00000033918.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2303	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAATCACTTCCGGGGCG	963	False	NA	NA	False	NA	NA	NA	20098572	20121124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_20098836_20101472_20101570_20101672_20101776_20104514_20104584_20105667_20105820_20106606_20106702_20112102_20112153_20116342_20116484_20116880_20117079_20120960
52185	chr17	+	1394	7	ISM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	4943	3	4720	0	3prime_fragment	FALSE	canonical	3	568	junction_1	27.9085809185793	3	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	NA	False	NA	NA	NA	26476915	26499694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
52186	chr6	-	2399	8	NNC	ENSMUSG00000033720.13	novel	3656	14	NA	NA	-5019	-874	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.53143502095276	9	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	85246934	85190904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_85192729_85206177_85206294_85211744_85211831_85213821_85213938_85233324_85233416_85244853_85244920_85246079_85246137_85246891
52187	chr17	-	1123	6	NNC	ENSMUSG00000002076.13	novel	1479	7	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	500.864612445319	32	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATTCTCAATATAATCT	NA	False	NA	NA	False	NA	NA	NA	32253494	32165072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32165589_32230156_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
52188	chr15	-	2215	13	NNC	ENSMUSG00000022442.17	novel	2060	12	NA	NA	2	13	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	26.455413224686	139	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATTTGTGTGTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	83395092	83367956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83393853_83393998_83394934
52189	chr2	+	1828	9	Antisense	novelGene_ENSMUSG00000039671.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCAGCCCTTCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	165627456	165650157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165627661_165629083_165629171_165633827_165633892_165634723_165634888_165636314_165636558_165638006_165638082_165639853_165639935_165647106_165647298_165649438
52190	chr19	-	2209	6	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1411	4	NA	NA	48	-3	multi-exon	FALSE	canonical	2	3	junction_1	33.3682483807586	4	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTGCTTTGTCTTGGGT	7935	False	NA	NA	False	NA	NA	NA	4861492	4834323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4834809_4835463_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4861199
52191	chr16	+	1431	3	Antisense	novelGene_ENSMUSG00000043301.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGACTCAAGAGTGTGT	8800	False	NA	NA	False	NA	NA	NA	94561017	94565160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_94561127_94563704_94564214_94564347
52192	chr11	-	1366	4	NNC	ENSMUSG00000020737.13	novel	1375	5	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	825.422046928452	6834	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCACCGTGTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	115405210	115388182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115389126_115392813_115392929_115393857_115394001_115405045
52193	chr16	-	1804	1	Antisense	novelGene_ENSMUSG00000081692.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTCCTCAGGAAGCATT	NA	False	NA	NA	False	NA	NA	NA	94421297	94419493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_94419500_94421300
52194	chr5	+	1493	11	NNC	ENSMUSG00000029146.15	novel	2018	15	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	120.165261203062	1	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	NA	False	NA	NA	NA	31353113	31356244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355705
52195	chr7	-	1461	12	NNC	ENSMUSG00000006763.15	novel	4728	12	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	124.416721790751	2	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCATCGGGATGATGGT	NA	False	NA	NA	False	NA	NA	NA	46360075	46338727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349127_46351230_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
52196	chr7	+	2581	19	NNC	ENSMUSG00000030769.16	novel	2396	17	NA	NA	-234	-2	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_1	8.18912256563923	55	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTCAGAGGTGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	122813768	122872474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_122813907_122814069_122814221_122828131_122828215_122832210_122832328_122834820_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
52199	chr5	+	4058	3	Antisense	novelGene_ENSMUSG00000041313.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCATCAGCCGCGCGCC	NA	False	NA	NA	False	NA	NA	NA	148285391	148336638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148289262_148301973_148302061_148336537
52200	chr11	+	2837	6	NIC	ENSMUSG00000020514.9	novel	722	7	NA	NA	-3	1	intron_retention	FALSE	canonical	3	1080	junction_1	124.290948986642	6	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTCATTGAATTATTG	1493	False	NA	NA	False	NA	NA	NA	58062498	58070392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58062540_58062619_58062669_58063858_58066169_58066957_58067036_58068042_58068113_58070103
52201	chr10	-	2275	5	NNC	ENSMUSG00000003348.11	novel	2682	4	NA	NA	7	120	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	30.1330383466387	45	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATAGAAAGCAGACTCAG	9151	False	NA	NA	False	NA	NA	NA	80537655	80520966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_80521771_80522263_80523008_80525685_80525889_80526902_80527402_80537630
52202	chr2	+	1697	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	142	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1095.80025552105	1	81	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATTTTGTTTATTGACT	NA	False	NA	NA	False	NA	NA	NA	130116553	130121236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117067_130117582_130117666_130117950_130118095_130118355_130118533_130118615_130118779_130118951_130119053_130119395_130119545_130119770_130119891_130120075_130120211_130120816
52203	chr3	-	1672	5	FSM	ENSMUSG00000027746.14	ENSMUST00000148338.8	381	5	-60	-1231	13	1231	multi-exon	FALSE	canonical	3	324	junction_3	16.1012421881046	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTTCAGGAACAGTT	NA	False	NA	NA	False	NA	NA	NA	53771170	53764011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034
52204	chr11	+	1811	2	FSM	ENSMUSG00000048497.12	ENSMUST00000142112.2	374	2	201	-1638	186	5	multi-exon	FALSE	canonical	0	0	junction_1	0	89	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTGTGTCTGGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	62539846	62557185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62539968_62555495
52205	chr11	-	502	3	ISM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	6983	3	1188	-2	3prime_fragment	FALSE	canonical	3	18443	junction_2	655	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33106089	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002
52207	chr6	-	1849	8	NNC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	77.5305074911595	69	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTACATTGTGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	120508253	120486460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120487378_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
52208	chr2	+	1083	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	24	0	24	0	multi-exon	FALSE	canonical	3	219	junction_1	136	1366	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5241	False	NA	NA	False	NA	NA	NA	157209537	157238683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157209561_157220968_157221175_157237829
52209	chr10	-	2377	15	NNC	ENSMUSG00000020079.16	novel	2604	15	NA	NA	-6	-38	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	91.1315767761882	11	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACACGGCATTCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	62285523	62265156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62265614_62266249_62266399_62268131_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279173_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
52210	chr19	-	1765	10	NNC	ENSMUSG00000042694.18	novel	1992	10	NA	NA	2	-16	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	40.2090217749545	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGCATGGCTTGGCATTT	NA	False	NA	NA	False	NA	NA	NA	47525461	47489492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525361
52211	chr4	+	3837	25	FSM	ENSMUSG00000036995.8	ENSMUST00000047526.8	4225	25	56	332	56	-332	multi-exon	FALSE	canonical	3	23	junction_10	6.55532014643238	30	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTCTGAGCCCCAG	1378	False	NA	NA	False	NA	NA	NA	135933731	135972195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135933959_135954718_135954792_135954873_135955020_135955709_135955785_135956710_135956761_135960549_135960662_135960874_135960961_135961334_135961411_135961638_135961726_135961894_135962005_135963685_135963756_135964007_135964096_135965486_135965536_135965642_135965831_135965909_135966044_135966202_135966298_135966491_135966670_135967428_135967515_135967661_135967778_135968316_135968385_135968465_135968577_135968683_135968880_135969966_135970193_135970758_135970853_135971099
52212	chr14	+	1077	6	NNC	ENSMUSG00000090374.2	novel	453	4	NA	NA	-1342	8896	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	34	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCAAGAGTTTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	63729805	63746217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63730296_63731190_63731461_63731805_63731897_63733168_63733247_63737680_63737769_63746157
52213	chr7	+	2960	24	ISM	ENSMUSG00000030786.19	ENSMUST00000064821.14	4682	30	17582	1085	17479	-125	3prime_fragment	TRUE	canonical	0	0	junction_7	2.165199930085	5	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAACAAGCAGGTCTAGAT	NA	False	NA	NA	False	NA	NA	NA	127679393	127716578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127679564_127680776_127680931_127682847_127682999_127684105_127684180_127684714_127684845_127685101_127685245_127700587_127700729_127700805_127701019_127706799_127706931_127707011_127707176_127711299_127711455_127711546_127711679_127711832_127711907_127712128_127712271_127712362_127712489_127712989_127713070_127713907_127713992_127714290_127714367_127714939_127715048_127715189_127715274_127715373_127715488_127715573_127715676_127715907_127716019_127716477
52214	chr7	+	1024	1	ISM	ENSMUSG00000030786.19	ENSMUST00000064821.14	4682	30	54817	11	54714	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATTTTACATATGTAT	3901	False	NA	NA	False	NA	NA	NA	127716628	127717652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127716600_127717700
52215	chr14	-	3850	7	NNC	ENSMUSG00000055538.8	novel	4556	4	NA	NA	-14	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.4123661531441	7	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATATAGCCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	25769477	25712113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_25712773_25713082_25715676_25715723_25715827_25720050_25720216_25757434_25757636_25769034_25769133_25769446
52216	chr14	+	1550	14	NNC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	76.6425654596497	4	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	52122391	52129325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52122481_52122607_52122762_52122844_52122980_52123924_52123996_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128803_52129009_52129083
52218	chr8	+	2091	10	FSM	ENSMUSG00000005469.11	ENSMUST00000005606.8	2276	10	182	3	182	-3	multi-exon	FALSE	canonical	3	651	junction_8	27.9342260972865	159	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTGTCGCTGGTTTTCC	634	False	NA	NA	False	NA	NA	NA	84699803	84723069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84699862_84707402_84707465_84707800_84707930_84713465_84713565_84714911_84714995_84717056_84717184_84717270_84717367_84717491_84717615_84721423_84721589_84721920
52219	chrX	-	1665	6	FSM	ENSMUSG00000031239.6	ENSMUST00000033591.6	1744	6	-20	99	-20	-99	multi-exon	FALSE	canonical	3	44	junction_1	8.06473806146238	217	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTTTTATTTTCATCAC	NA	False	NA	NA	False	NA	NA	NA	106447002	106440803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_106441586_106441701_106441853_106442376_106442488_106442701_106442900_106443172_106443305_106446711
52220	chr11	-	1099	10	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	8417.82077162551	1	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113072	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102808_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110384_33110827_33110922_33111105_33111226_33111547_33111628_33112921
52221	chr17	-	1883	11	NNC	ENSMUSG00000024246.10	novel	2239	11	NA	NA	53	-11	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	45.4774669479293	220	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTAACCTATAATTTG	8217	False	NA	NA	False	NA	NA	NA	81372443	81333771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81347860_81347975_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
52222	chr10	-	610	1	Intergenic	novelGene_3411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGCCATGATGGTGAACA	NA	False	NA	NA	False	NA	NA	NA	22468013	22467403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_22467400_22468000
52223	chr13	-	1640	2	Antisense	novelGene_ENSMUSG00000096107.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	58	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGACGGACCGACCTCTT	NA	False	NA	NA	False	NA	NA	NA	3412979	3411076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3412567_3412829
52225	chr12	+	1482	1	FSM	ENSMUSG00000091905.4	ENSMUST00000167639.4	691	1	-118	-673	-118	673	mono-exon	FALSE	NA	NA	NA	NA	NA	1	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGTGCATTCTTTCATG	NA	False	NA	NA	False	NA	NA	NA	64832966	64834448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_64833000_64834400
52226	chr8	+	2332	11	NIC	ENSMUSG00000031684.12	novel	3595	12	NA	NA	-10	-751	intron_retention	FALSE	canonical	1	3	junction_9	39.4031724611103	8	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACCCAAACAAGAAGCTAA	NA	False	NA	NA	False	NA	NA	NA	79236010	79459457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79456246_79456393_79458237
52227	chr11	+	2098	5	FSM	ENSMUSG00000069808.14	ENSMUST00000094014.10	2130	5	28	4	-21	-4	multi-exon	FALSE	canonical	3	42	junction_2	6.18465843842649	61	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTATTTGTTATGTGCCCT	3434	False	NA	NA	False	NA	NA	NA	76092868	76100238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76093082_76093377_76093462_76096079_76096282_76097953_76098050_76098735
52228	chr3	-	2156	4	FSM	ENSMUSG00000027845.16	ENSMUST00000128716.2	532	4	-207	-1417	-10	275	multi-exon	FALSE	canonical	0	0	junction_3	35.3553390593274	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCCTGTCCCCATCCTCA	NA	False	NA	NA	False	NA	NA	NA	103716715	103709925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_103711372_103714709_103714893_103715387_103715415_103716215
52229	chr4	+	1405	11	FSM	ENSMUSG00000028671.17	ENSMUST00000102541.10	1430	11	23	2	-7	-2	multi-exon	FALSE	canonical	3	107	junction_1	18.7712546197637	409	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCAGATTCTCACAGATG	4585	False	NA	NA	False	NA	NA	NA	135691060	135695487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
52230	chr19	-	373	1	Intergenic	novelGene_1277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTTAAAAAGCCGGGCA	8069	False	NA	NA	False	NA	NA	NA	41908958	41908585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_41908600_41909000
52231	chr7	+	1220	6	NNC	ENSMUSG00000030588.13	novel	1126	8	NA	NA	0	-14	intron_retention	FALSE	canonical	0	0	junction_5	593.89278493681	7	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGGGCTCGGCGCAGC	6061	False	NA	NA	False	NA	NA	NA	28937777	28946940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28937862_28943494_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946716
52233	chr12	+	1407	8	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-10	-1701	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2265.84073687847	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATATTTAATTGTAGGC	NA	False	NA	NA	False	NA	NA	NA	78908848	78932083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913542_78921337_78921422_78923885_78924018_78926724_78926827_78927905_78928004_78930031_78930172_78931580
52234	chr7	-	980	6	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	14104	456	13897	-456	3prime_fragment	FALSE	canonical	3	2541	junction_5	166.792805600242	1	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	9523	False	NA	NA	False	NA	NA	NA	126151479	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146
52236	chr11	+	1547	6	NIC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	13	5	intron_retention	FALSE	canonical	3	866	junction_2	130.287988701952	390	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTAACAAAGGTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	101518780	101526903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101518891_101519098_101519279_101521063_101521806_101524627_101524727_101525613_101525700_101526573
52237	chr5	+	2214	15	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	111.088514992619	1	107	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATGTTAGTAGTTTGT	9205	False	NA	NA	False	NA	NA	NA	110987871	111022000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996504_110996644_110997461_110997553_111003002_111003112_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011218_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019959_111021353
52238	chr14	-	1473	6	ISM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	14996	-145	10	145	3prime_fragment	FALSE	canonical	3	54	junction_3	9.47839648885823	312	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCAAGTGGGCACACCCC	NA	False	NA	NA	False	NA	NA	NA	64678356	64359928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158
52239	chr10	+	855	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	3	0	3	0	multi-exon	FALSE	canonical	3	475	junction_4	15.6025638918737	2168	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	31189381	31204200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
52240	chr3	+	1784	6	NIC	ENSMUSG00000027852.15	novel	4470	7	NA	NA	6	236	intron_retention	FALSE	canonical	3	741	junction_4	37.9599789251786	35	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTACTTTCTTCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	102965669	102971951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102971474_102971549
52241	chr11	+	1978	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	49.8634822681421	336	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTGATTGAGTATTCT	NA	False	NA	NA	False	NA	NA	NA	51153972	51172593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
52242	chr13	+	2170	4	ISM	ENSMUSG00000021488.9	ENSMUST00000099490.3	12784	23	3459	71857	855	5621	internal_fragment	FALSE	canonical	3	234	junction_3	13.5973853695808	1	104	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCTTAAAATTAGTAGTCC	NA	False	NA	NA	False	NA	NA	NA	55361053	55394281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55361964_55381707_55381844_55386502_55386676_55393330
52245	chr10	+	2006	3	NNC	ENSMUSG00000085687.2	novel	4118	2	NA	NA	-5956	-14101	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGAAAGAGTGTGTCTC	5260	False	NA	NA	False	NA	NA	NA	4353076	4359268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4353500_4353871_4353989_4357802
52246	chr15	-	2590	9	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-72	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1228.50187601607	1	147	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGAAATAAAATACTGTT	NA	False	NA	NA	False	NA	NA	NA	81283867	81247898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249653_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272596_81273843_81273925_81283660
52247	chr8	-	3807	22	FSM	ENSMUSG00000031555.16	ENSMUST00000084035.12	3985	22	153	25	43	17	multi-exon	FALSE	non_canonical	0	0	junction_2	31.0462313449736	64	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAATAAAATACTTGAAA	NA	False	NA	NA	False	NA	NA	NA	25506785	25439651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_25441027_25445947_25446016_25452929_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
52248	chr3	+	3348	6	NNC	ENSMUSG00000004233.15	novel	3457	7	NA	NA	61858	1237	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	19.34528366295	1	86	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTGAGGGCCAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	99110338	99125154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_99111933_99112540_99112627_99112715_99112767_99114027_99114146_99121971_99122091_99123774
52249	chr7	-	2169	13	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51262	10	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	19.7188573029304	83	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCACGTGTCCTTGTGATT	NA	False	NA	NA	False	NA	NA	NA	108986762	108878419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495_108940847_108986659
52251	chr2	-	3484	16	NNC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	-18	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	91.5237431246972	1	208	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTCTGTACTTCATAGC	NA	False	NA	NA	False	NA	NA	NA	91540882	91504980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516895_91518991_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540603
52252	chr4	+	1543	9	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-237	-6	intron_retention	FALSE	canonical	2	236	junction_4	31.5255352849083	1019	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACACCAGAGGAGTAG	0	True	NA	NA	False	NA	NA	NA	41755520	41758689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
52254	chr2	-	1523	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-30	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	128.555396619512	1	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCAGCCTTGGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	73044707	72923548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987172_73029822_73029873_73033668_73033813_73043203_73043305_73044629
52256	chr12	+	2374	2	NNC	ENSMUSG00000059970.8	novel	2524	2	NA	NA	-18	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAAATTGCTGTCTGGCG	NA	False	NA	NA	False	NA	NA	NA	76451164	76453705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76452973_76453139
52258	chr8	-	2572	23	NNC	ENSMUSG00000036686.17	novel	3471	29	NA	NA	4354	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	33.7722072638297	1	76	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACACTTGCCTCAGC	NA	False	NA	NA	False	NA	NA	NA	84870140	84859474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84859887_84859960_84860009_84860092_84860168_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867125_84867221_84867307_84867391_84867465_84867709_84867835_84869929
52259	chr8	-	2017	11	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	2	-20	intron_retention	FALSE	canonical	0	0	junction_2	86.8147452913386	1	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTAAAGACTTTATACT	NA	False	NA	NA	False	NA	NA	NA	106578638	106571328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571628_106571705_106571806_106571887_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575956_106576056_106576182_106576257_106576346_106576464_106576556_106578502
52262	chr9	-	1512	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239278.2	1534	3	0	22	0	-8	multi-exon	FALSE	canonical	3	834	junction_1	178	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAACATTCAATTGCA	NA	False	NA	NA	False	NA	NA	NA	88404941	88403126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403502_88403702_88404435_88404536
52263	chr19	-	2053	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	145	143	20	-139	multi-exon	FALSE	canonical	3	832	junction_1	0	1	112	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCCTCCAAGTGATGTT	2175	False	NA	NA	False	NA	NA	NA	10181287	10176644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10178462_10181051
52265	chr19	-	1251	5	NIC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-36	-636	intron_retention	FALSE	canonical	3	1100	junction_1	68.7327251023848	38	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTGTGCGCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	7183635	7176210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
52266	chr18	+	2965	4	ISM	ENSMUSG00000071847.14	ENSMUST00000096554.12	1842	6	11590	-1336	409	1336	3prime_fragment	FALSE	canonical	3	18	junction_1	3.09120616516523	67	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAACCCCACGAAATACGT	NA	False	NA	NA	False	NA	NA	NA	63066989	63086871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_63067130_63069976_63070509_63082945_63083268_63084900
52267	chr19	+	1972	12	FSM	ENSMUSG00000071657.13	ENSMUST00000171649.8	1962	12	-31	21	-31	-4	multi-exon	FALSE	canonical	0	0	junction_7	50.3060057535483	409	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAGCTGCTTGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	8814799	8826026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
52268	chr5	-	1451	2	NNC	ENSMUSG00000029500.17	novel	2098	6	NA	NA	7	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	0	126	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTACTTTGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	110417746	110407038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110408267_110417523
52269	chr7	+	1268	7	NNC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	2	27	junction_1	167.377484215238	839	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2898	False	NA	NA	False	NA	NA	NA	6998485	7006090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6998712_6999212_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
52270	chr3	-	3025	2	FSM	ENSMUSG00000049300.12	ENSMUST00000190378.2	3051	2	24	2	24	-2	multi-exon	FALSE	canonical	3	26	junction_1	0	27	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTTGTAACCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	110158285	110153429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_110155172_110157002
52271	chr4	+	1453	8	NNC	ENSMUSG00000028884.15	novel	1813	9	NA	NA	0	-268	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	663.455764177543	2	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCTGAAATGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	132495686	132505795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503568_132503721_132505100
52272	chr5	+	1455	8	NNC	ENSMUSG00000025538.16	novel	2264	9	NA	NA	-7	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	169.868856979226	16	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTAAGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	129875844	129892264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883564_129888669_129888763_129888910_129889056_129891479
52273	chr14	-	2000	4	FSM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	60	4	-59	-4	multi-exon	FALSE	canonical	3	24	junction_3	6.0184900284226	86	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTAAGACCTTTCTATC	6425	False	NA	NA	False	NA	NA	NA	46628066	46620980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_46622170_46623171_46623552_46624612_46624738_46627760
52274	chr7	-	4798	23	FSM	ENSMUSG00000032776.10	ENSMUST00000079323.8	5802	23	-37	1041	-37	-1041	multi-exon	FALSE	canonical	1	1	junction_22	2.92220057462644	7	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGGAAGGTATCATTAGT	NA	False	NA	NA	False	NA	NA	NA	71956393	71728618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_71730606_71732834_71732933_71739918_71740029_71752891_71753002_71771445_71771488_71776885_71777009_71810887_71811008_71812945_71813021_71814357_71814460_71833552_71833656_71835510_71835614_71850093_71850188_71852036_71852224_71861342_71861474_71863691_71863857_71873768_71873805_71877727_71877840_71878219_71878297_71879075_71879219_71895208_71895318_71896855_71896919_71908846_71909380_71956218
52275	chr9	+	755	5	NNC	ENSMUSG00000032399.9	novel	596	4	NA	NA	1444	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8718.66779889565	15	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082118	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082244_64084631_64084760_64085002_64085087_64085178_64085300_64085504
52276	chr16	-	1268	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	-5	3	-5	-2	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	147	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTTGTTGTATGTCCTC	NA	False	NA	NA	False	NA	NA	NA	16942975	16931264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
52279	chr2	+	1409	7	NNC	ENSMUSG00000027203.16	novel	1950	6	NA	NA	-183	-109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	883.552425659558	13	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCCCATTTGGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	125089636	125100419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276_125099331_125099527
52281	chr7	-	1607	7	ISM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	316	-6	-91	6	3prime_fragment	FALSE	canonical	3	470	junction_6	31.2663290671184	685	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTGCATTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	4687751	4663513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270
52282	chr8	-	2595	20	NNC	ENSMUSG00000006276.11	novel	2686	22	NA	NA	-14	-102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.048727080955	1	143	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCCAGCCCTTCCTTGCA	NA	False	NA	NA	False	NA	NA	NA	73175318	73094946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73095357_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132927_73133000_73133952_73134151_73134737_73134900_73135260_73135332_73136170_73136257_73136523_73136681_73138610_73138762_73140684_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150846_73153491_73153657_73175248
52284	chr17	-	1450	14	NNC	ENSMUSG00000041319.15	novel	1431	14	NA	NA	-7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	133.727533643741	789	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	747	False	NA	NA	False	NA	NA	NA	23892863	23887592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892813
52285	chr10	-	2149	2	FSM	ENSMUSG00000035397.9	ENSMUST00000038558.9	2674	2	525	0	525	0	multi-exon	FALSE	canonical	3	135	junction_1	0	179	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCCCTTCTGTCTGTCTG	9231	False	NA	NA	False	NA	NA	NA	80412630	80402957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80405057_80412580
52286	chr11	-	1629	10	Intergenic	novelGene_2490	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	231	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCGCGCGCGGCCGAGA	NA	False	NA	NA	False	NA	NA	NA	104219275	104122304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_104122431_104173190_104173304_104185681_104185748_104193183_104193234_104196034_104196234_104197449_104197591_104201099_104201359_104212174_104212255_104213249_104213365_104218795
52288	chr12	-	1965	14	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	3508	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	423.29974551872	1	88	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAACGTGTAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	87515531	87496704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87497158_87497364_87497487_87497579_87497740_87499351_87499470_87500627_87500723_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379
52289	chr2	-	1755	4	NIC	ENSMUSG00000027472.15	novel	1273	5	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	235	junction_1	14.9666295470958	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTGAGTTGTCACCCAC	8677	False	NA	NA	False	NA	NA	NA	152857309	152850810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152852259_152854300_152854376_152855929_152856006_152857153
52291	chr7	-	1425	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	0	6	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	91	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCTTGCATTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	4687980	4663513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
52292	chr2	+	2497	23	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	11	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	163.264077772513	1	121	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGGATGTCCAGATGTA	NA	False	NA	NA	False	NA	NA	NA	130266295	130285608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130281293_130281446_130281539_130281635_130281760_130281838_130282150_130282263_130282371_130282500_130282626_130282663_130282830_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284567_130285225_130285320_130285433
52294	chr9	-	724	3	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	18	-10	intron_retention	FALSE	canonical	3	3484	junction_1	2102	239	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTAAAATGTGCGTCGT	NA	False	NA	NA	False	NA	NA	NA	78275441	78274343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78274577_78274796_78274849_78275002
52295	chr7	+	1804	8	Antisense	novelGene_ENSMUSG00000030605.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	82	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGTCACAGAAGTCACC	165	False	NA	NA	False	NA	NA	NA	78783520	78795473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_78784293_78784397_78784552_78786410_78786592_78791393_78791537_78792148_78792280_78792615_78792795_78794987_78795124_78795365
52297	chr11	-	1895	8	NNC	ENSMUSG00000001891.17	novel	2683	10	NA	NA	-6810	123	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	143.823020495642	137	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGATTTTCATTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	21286702	21271549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21286551
52298	chr4	-	1516	11	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	16	-6	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_10	436.918573649599	66	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCAGTCCTCGGTCATC	NA	False	NA	NA	False	NA	NA	NA	124830694	124812263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381_124830522_124830609
52299	chr4	+	1470	8	FSM	ENSMUSG00000006390.16	ENSMUST00000006557.13	1811	8	2	339	2	1	multi-exon	FALSE	canonical	3	108	junction_5	11.9505785019225	377	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	118285291	118289811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_118285413_118287692_118287753_118287911_118288103_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
52300	chr17	-	2177	3	Antisense	novelGene_ENSMUSG00000116895.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTCCGCAGGGAGACCCG	461	False	NA	NA	False	NA	NA	NA	15240290	15236493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_15236549_15237402_15238459_15239224
52301	chr6	-	1260	8	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	4	-127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	655.542243225455	2	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTTTGTGGGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	124791113	124787681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788147_124788214_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
52302	chr10	+	2601	15	NNC	ENSMUSG00000019849.12	novel	10933	15	NA	NA	750	-8212	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	220.938905582516	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGAGTGGGAGGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	44944048	45035082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_44944102_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973611_44983867_44983974_44991158_44991351_44996738_44996937_45002059_45002164_45024080_45024218_45026531_45026627_45029150_45029283_45031611_45031769_45034327
52303	chr9	-	563	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5208	9931	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGCGACGGAGGGCAGCG	9629	False	NA	NA	False	NA	NA	NA	57439704	57428638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57428698_57436237_57436354_57437521_57437644_57438949_57439075_57439563
52304	chr18	+	3103	25	NNC	ENSMUSG00000033628.16	novel	3257	25	NA	NA	15	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	35.9906430741226	2	63	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCTCATATGCCTTGTT	NA	False	NA	NA	False	NA	NA	NA	30405994	30481170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415190_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435972_30436128_30436618_30436710_30438027_30438096_30444272_30444379_30445604_30445722_30449895_30450028_30452553_30452683_30453286_30453357_30455222_30455288_30456574_30456660_30457596_30457672_30466213_30466383_30469146_30469238_30477003_30477130_30480775
52310	chr4	-	3670	8	ISM	ENSMUSG00000035407.9	ENSMUST00000102790.4	4795	10	38272	3	-7790	-3	3prime_fragment	FALSE	canonical	1	2	junction_7	8.97161055320433	26	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGGTCTTACGATTTCT	NA	False	NA	NA	False	NA	NA	NA	98667502	98643137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_98644823_98649639_98649841_98653699_98653843_98659492_98659713_98661619_98661708_98662910_98663130_98665235_98665348_98666500
52311	chr3	-	1334	10	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	5640	16666	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCGGCCGCACGCCCGC	NA	False	NA	NA	False	NA	NA	NA	32781122	32762879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32763030_32766015_32766089_32772495_32772624_32772715_32772804_32774047_32774112_32774334_32774448_32774581_32774665_32776768_32776865_32779395_32779481_32780668
52313	chr1	-	1666	8	NNC	ENSMUSG00000042305.13	novel	3149	8	NA	NA	3	155	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	258.4491423543	5	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTATAAGATTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	134289688	134275264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288639_134289271_134289362_134289499
52314	chr11	-	3196	21	Intergenic	novelGene_2260	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	89	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCGTCGCCGCGCCCGA	NA	False	NA	NA	False	NA	NA	NA	50061700	50022218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_50022382_50026649_50026761_50031206_50031329_50035853_50036081_50036927_50037188_50038846_50039054_50040526_50040740_50042248_50042307_50042747_50042897_50043447_50043659_50045904_50046029_50047570_50047860_50049242_50049372_50049487_50049587_50050468_50050544_50052287_50052522_50052870_50052936_50054649_50054742_50058968_50059051_50059520_50059628_50061521
52315	chrX	+	1603	5	ISM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	627	6276	627	-6276	3prime_fragment	FALSE	canonical	2	4	junction_1	2.73861278752583	9	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGGGAAAGATGCCAATGC	NA	False	NA	NA	False	NA	NA	NA	133587894	133591230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_133587975_133588765_133588856_133589198_133589282_133589568_133589654_133589965
52316	chrX	+	1764	1	ISM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	8465	10	8465	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	68	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGCAAAAGAAGAGATAT	NA	False	NA	NA	False	NA	NA	NA	133595732	133597496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_133595700_133597500
52319	chr19	+	2135	12	NNC	ENSMUSG00000025036.8	novel	3205	12	NA	NA	22	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	15.2975987960732	39	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAAACACTGTCTGCAAA	NA	False	NA	NA	False	NA	NA	NA	46561827	46585333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580770_46584140
52320	chr6	+	4273	34	NNC	ENSMUSG00000030111.10	novel	4605	36	NA	NA	2105	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	17.6391750336508	1	116	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCACCATTCCTTCATT	NA	False	NA	NA	False	NA	NA	NA	121615291	121656179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_121615419_121616164_121616322_121616473_121616527_121618210_121618400_121618947_121619033_121621073_121621195_121621849_121621968_121622110_121622221_121623757_121623920_121624907_121625136_121625563_121625618_121626725_121626869_121631423_121631574_121634338_121634507_121634891_121634968_121636245_121636373_121636878_121637042_121637827_121637929_121638385_121638508_121639351_121639404_121644073_121644158_121645004_121645182_121645487_121645576_121646470_121646628_121646894_121646970_121647860_121648042_121650425_121650650_121651689_121651909_121652077_121652206_121653009_121653101_121653862_121653932_121654940_121655044_121655477_121655520_121656050
52321	chr18	+	2480	17	Antisense	novelGene_ENSMUSG00000003778.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCACTTCTCCTTTTTCAC	NA	False	NA	NA	False	NA	NA	NA	34732971	34747592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34733145_34735261_34735303_34735726_34735832_34736761_34736937_34737649_34737722_34737883_34737977_34738526_34738734_34739460_34739520_34739727_34739817_34740087_34740564_34740844_34741109_34741470_34741674_34742849_34743001_34744182_34744327_34746101_34746153_34746267_34746347_34747494
52323	chr8	+	1692	4	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGTACCCAGAGCCACAGT	NA	False	NA	NA	False	NA	NA	NA	43748118	43759956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43749562_43753653_43753745_43757514_43757587_43759870
52324	chr4	-	1367	11	NNC	ENSMUSG00000063800.6	novel	1516	10	NA	NA	83	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	167.069446638217	1	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCTGGCTTTTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	108436450	108422068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181_108436291_108436354
52325	chr1	+	2623	5	ISM	ENSMUSG00000001138.14	ENSMUST00000001166.14	5193	8	8620	1021	-274	-1021	3prime_fragment	FALSE	canonical	3	68	junction_4	9.63068014212911	63	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACGGTGTGAAGACTGGT	1854	False	NA	NA	False	NA	NA	NA	36559567	36566297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_36559770_36559899_36559997_36560285_36560420_36560781_36560921_36564246
52326	chr3	-	1232	4	FSM	ENSMUSG00000037161.15	ENSMUST00000038154.12	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_2	9.84321537348893	358	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	51303969	51295832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847
52327	chr12	+	2911	10	FSM	ENSMUSG00000004151.18	ENSMUST00000159334.8	3981	10	149	921	149	-17	multi-exon	FALSE	non_canonical	0	0	junction_1	7.1509301820907	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGCCTTGTTTTCATT	3901	False	NA	NA	False	NA	NA	NA	38833656	38917281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_38833802_38843169_38843224_38877776_38877907_38881079_38881269_38885067_38885316_38902218_38902288_38904158_38904228_38906939_38907110_38911285_38911388_38915546
52328	chr7	-	2061	10	NNC	ENSMUSG00000030605.16	novel	2125	10	NA	NA	9	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	480.44264569506	1	119	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTCGTGTTCTCCACTG	NA	False	NA	NA	False	NA	NA	NA	78798770	78783537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784286_78784395_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
52329	chr2	-	1700	8	NNC	ENSMUSG00000018322.11	novel	2302	7	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.70982138013	30	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATACAGCTGGCTCTGA	5948	False	NA	NA	False	NA	NA	NA	163913022	163895466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163896070_163896218_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
52330	chr14	-	1499	1	Antisense	novelGene_ENSMUSG00000012405.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCGAAAGAGCGATCGCTG	NA	False	NA	NA	False	NA	NA	NA	4200715	4199216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_4199200_4200700
52331	chr11	-	1575	3	NNC	ENSMUSG00000034120.19	novel	1899	3	NA	NA	4	0	intron_retention	FALSE	non_canonical	0	0	junction_2	929	900	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTGTCCTGGTCTTTTG	6007	False	NA	NA	False	NA	NA	NA	116743916	116740729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116741788_116742846_116743064_116743616
52332	chr14	-	1551	9	NNC	ENSMUSG00000022218.17	novel	2852	15	NA	NA	3894	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	70.0357051795725	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTTAGTAGTCCTG	4696	False	NA	NA	False	NA	NA	NA	55946651	55937489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946562
52333	chr14	-	3062	3	FSM	ENSMUSG00000022054.12	ENSMUST00000022638.6	3334	3	0	272	0	-272	multi-exon	FALSE	canonical	3	13	junction_2	6.5	33	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAACATAAGCCAAATGTG	NA	False	NA	NA	False	NA	NA	NA	68362295	68357003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_68358834_68360269_68360395_68361188
52335	chr8	+	1471	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-20	326	multi-exon	FALSE	canonical	0	0	junction_1	630.135731410305	8	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACCGTGTGGGCATTCAA	NA	False	NA	NA	False	NA	NA	NA	19834741	20046214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834880_20030550_20030924_20035860_20036160_20039783_20039904_20041811_20041871_20045732
52336	chr3	+	3725	5	NNC	ENSMUSG00000037730.14	novel	3394	7	NA	NA	0	-2862	intron_retention	FALSE	canonical	1	8	junction_4	81.6528474702505	1	122	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCTGACAACCTAAATTC	8787	False	NA	NA	False	NA	NA	NA	30656787	30668082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663218_30665589
52338	chr16	-	1269	8	NNC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	124.722385598527	852	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTTGTTGTATGTCCTC	NA	False	NA	NA	False	NA	NA	NA	16943001	16931264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942878
52339	chr11	+	1440	3	NIC	ENSMUSG00000063316.14	novel	732	4	NA	NA	-19	-14	intron_retention	FALSE	canonical	3	8302	junction_2	2434	40	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAATACAAG	2362	False	NA	NA	False	NA	NA	NA	101333244	101336341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101334497_101336045_101336157_101336264
52342	chr10	+	1463	11	NNC	ENSMUSG00000044475.15	novel	1230	6	NA	NA	294	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	72.6559701607514	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGTGCTGTGGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	59839442	59935806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_59839527_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
52343	chr12	+	2337	4	NNC	ENSMUSG00000044715.8	novel	2720	3	NA	NA	6	-8	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	58.2656750487703	139	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTGAGTTGAGCATAAA	NA	False	NA	NA	False	NA	NA	NA	105651648	105669274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105651718_105664976_105665236_105666896_105668682_105669050
52344	chr11	-	860	4	NNC	ENSMUSG00000032673.6	novel	2126	3	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20.757863302587	19	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTGTCTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	29465024	29462876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_29463237_29463375_29463677_29464431_29464523_29464916
52345	chr1	+	2149	3	NIC	ENSMUSG00000025979.14	novel	1143	7	NA	NA	955	71	intron_retention	FALSE	canonical	3	402	junction_2	62.5	2	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAATGCTGCTAAACAAT	NA	False	NA	NA	False	NA	NA	NA	55187743	55192229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_55189385_55190129_55190242_55191833
52346	chr9	-	561	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	69	602	4	224	multi-exon	FALSE	canonical	3	1085	junction_1	10	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTGTGTGTGTGTGATA	3782	False	NA	NA	False	NA	NA	NA	96360659	96353591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96353906_96356010_96356059_96360460
52347	chr13	+	3789	5	FSM	ENSMUSG00000054728.18	ENSMUST00000136576.8	716	5	22	-3095	7	-7	multi-exon	FALSE	canonical	3	6	junction_4	2.29128784747792	8	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTTAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	43276354	43291982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_43276531_43281613_43281676_43286395_43286537_43287402_43287480_43288649
52348	chr17	+	2019	14	NNC	ENSMUSG00000041831.18	novel	1504	9	NA	NA	-354	6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	19.6763757667313	2	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCAGCATTTATTAACAA	1038	False	NA	NA	False	NA	NA	NA	6942965	7005449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6943124_6943610_6943830_6954660_6954726_6967051_6967104_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
52349	chr11	+	2562	12	Intergenic	novelGene_2195	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGGCCGAGGCCCCGGG	725	False	NA	NA	False	NA	NA	NA	4047043	4068768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_4048436_4053387_4053556_4053671_4053818_4053899_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061222_4061438_4061503_4061893_4061938_4066680_4066757_4068624
52352	chr16	-	1559	1	NIC	ENSMUSG00000022889.8	novel	2294	10	NA	NA	2785	3281	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAAGGGCATTCAAAGATG	NA	False	NA	NA	False	NA	NA	NA	84529333	84527774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_84527800_84529300
52353	chr12	+	2581	2	Antisense	novelGene_ENSMUSG00000051367.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGAGCTGGGAGAGCAG	2142	False	NA	NA	False	NA	NA	NA	73088626	73093244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_73090603_73092639
52354	chr17	+	773	4	ISM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	16342	11	1163	0	3prime_fragment	FALSE	canonical	3	1376	junction_2	13.8162545173751	45	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21181914	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_21182002_21182835_21182979_21185500_21185593_21185716
52355	chr4	-	1004	1	Antisense	novelGene_ENSMUSG00000028977.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAGCCTGCCCCTACCAG	NA	False	NA	NA	False	NA	NA	NA	149039321	149038317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_149038300_149039300
52356	chr12	+	1351	8	FSM	ENSMUSG00000021286.9	ENSMUST00000223211.2	794	8	-27	-530	11	0	multi-exon	FALSE	canonical	3	188	junction_5	258.732309855699	1276	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	111780614	111794820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792012_111792067_111793976_111794120_111794251
52357	chr2	-	1749	12	NNC	ENSMUSG00000039660.17	novel	1805	12	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	173.338058846371	2	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCTCTCTAGACCCTGA	NA	False	NA	NA	False	NA	NA	NA	30068463	30063483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30064195_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066001_30066373_30066505_30066626_30066677_30066750_30066820_30067363_30067495_30067604_30067734_30067931_30067978_30068401
52358	chr2	+	897	7	NNC	ENSMUSG00000027203.16	novel	1950	6	NA	NA	-183	-19	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	1109.72233764427	12	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATATGATTTTACATAAAC	NA	False	NA	NA	False	NA	NA	NA	125089636	125099649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_125089817_125090879_125090941_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
52359	chr6	+	4732	4	NNC	ENSMUSG00000092386.2	novel	406	2	NA	NA	-1389	544	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	72	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCGCCCTCTGATGACG	NA	False	NA	NA	False	NA	NA	NA	72585429	72593717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72589094_72591054_72591139_72592506_72593432_72593658
52360	chr3	-	1386	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	-11	0	-11	0	multi-exon	FALSE	canonical	3	33	junction_2	248.490151458566	39	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88857269	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
52361	chr13	+	689	1	Antisense	novelGene_ENSMUSG00000114547.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGACAGGGGCATAAGTG	NA	False	NA	NA	False	NA	NA	NA	112730108	112730797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_112730100_112730800
52362	chr15	+	2861	14	NNC	ENSMUSG00000008690.16	novel	3299	20	NA	NA	-4322	-7405	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	106	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTTGTATCTTAGACCT	NA	False	NA	NA	False	NA	NA	NA	89235599	89240678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_89236093_89236186_89236276_89236349_89236470_89236563_89236730_89236805_89236986_89237057_89237157_89237234_89237336_89237410_89237548_89237659_89237807_89238036_89238214_89238288_89238515_89238759_89239023_89239560_89239616_89240070
52363	chr1	-	1806	13	FSM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	-1	16	-1	-16	multi-exon	FALSE	canonical	3	37	junction_8	32.2076595444831	130	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGGTAGAGCTTGGTTT	5188	False	NA	NA	False	NA	NA	NA	171108761	171104580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
52365	chrX	-	1313	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	3	0	-1	0	multi-exon	FALSE	canonical	3	95	junction_2	83.5	534	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	NA	NA	NA	149242147	149191573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149192597_149203337_149203438_149241957
52367	chr7	-	319	4	ISM	ENSMUSG00000098900.3	ENSMUST00000210994.2	633	6	-12	635	-12	-635	5prime_fragment	FALSE	canonical	2	3	junction_2	1.24721912892465	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATACCAAGTCTTTCTG	NA	False	NA	NA	False	NA	NA	NA	7281221	7270887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_7270918_7271038_7271163_7272293_7272333_7281095
52368	chr7	-	2571	5	Fusion	ENSMUSG00000066838.8_ENSMUSG00000110105.2	novel	2777	5	NA	NA	-24455	0	multi-exon	FALSE	canonical	0	0	junction_4	21.0535032714273	2	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATGACTATTGTGTC	NA	False	NA	NA	False	NA	NA	NA	7237452	7205115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7237377
52369	chr10	-	1396	2	NNC	ENSMUSG00000033318.8	novel	632	2	NA	NA	-560	-363	intron_retention	FALSE	non_canonical	0	0	junction_1	0	103	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAGTAACACACCCAAA	NA	False	NA	NA	False	NA	NA	NA	75669530	75667310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75667693_75668516
52370	chr9	+	792	6	NNC	ENSMUSG00000032294.18	novel	2113	8	NA	NA	-34	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7400.22546683545	281	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTGTGTTTTGTTTT	1835	False	NA	NA	False	NA	NA	NA	59563821	59586653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59586550
52371	chr4	+	3843	2	NNC	ENSMUSG00000039693.12	novel	1119	2	NA	NA	1966	3971	at_least_one_novel_splicesite	FALSE	non_canonical	2	11	junction_1	0	9	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTGCTGTCGTCATGGA	NA	False	NA	8	True	NA	NA	NA	48561912	48565890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_48562218_48562352
52372	chr19	-	2571	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	14	1186	3	-2	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	1	138	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTTTTTCCCCACTTA	NA	False	NA	NA	False	NA	NA	NA	32689717	32650223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
52373	chr15	+	1833	7	NNC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	19	-12	intron_retention	FALSE	canonical	0	0	junction_1	195.634650986646	2	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAAAGATGGACTGGA	494	False	NA	NA	False	NA	NA	NA	102391651	102407304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102391724_102392612_102392676_102395522_102395565_102396639_102396713_102397210_102398243_102399068_102399239_102406923
52374	chr2	+	1261	1	Intergenic	novelGene_2686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	225	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCCTCAGAGGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	118451282	118452543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_118451300_118452500
52377	chr5	+	1283	12	Antisense	novelGene_ENSMUSG00000088008.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2144	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGAGCACTAGCGCGACGC	NA	False	NA	NA	False	NA	NA	NA	135081814	135092941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135082278_135082401_135082492_135084880_135084940_135085191_135085237_135085693_135085782_135086473_135086527_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092779_135092870
52378	chr5	-	1408	1	NIC	ENSMUSG00000040429.7	novel	1376	2	NA	NA	1888	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAATATTTAAGATTA	1173	False	NA	NA	False	NA	NA	NA	3942008	3940600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_3940600_3942000
52379	chr11	-	2020	15	Antisense	novelGene_ENSMUSG00000020549.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	13	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGGCTGTTGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	64892429	64874453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_64874542_64878920_64878978_64880182_64880273_64883044_64883184_64883262_64883349_64885059_64885179_64886129_64886227_64888691_64888832_64889165_64889205_64889332_64889440_64889958_64890063_64890143_64890264_64890510_64890589_64891119_64891269_64891822
52380	chr4	+	1468	2	FSM	ENSMUSG00000050188.9	ENSMUST00000179323.2	808	2	-31	-629	-1	626	multi-exon	FALSE	canonical	3	54	junction_1	0	59	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTCCAGCGAAGATGCTG	NA	False	NA	NA	False	NA	NA	NA	125990414	125993003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_125990501_125991621
52381	chr5	+	2130	14	NNC	ENSMUSG00000004952.14	novel	2914	21	NA	NA	3148	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	25.354060865409	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGCTGAGGTGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	136127591	136140710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_136127717_136129755_136129874_136130097_136130275_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
52382	chr5	-	2753	1	NIC	ENSMUSG00000029512.12	novel	5213	28	NA	NA	-22	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	110	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGGTGTCAATTTCA	NA	False	NA	NA	False	NA	NA	NA	110935109	110932356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110932400_110935100
52383	chr11	-	588	6	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-100	339	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	90.7973567897216	54	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAACCCCTGCTCCTATG	NA	False	NA	NA	False	NA	NA	NA	4391205	4373728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4373796_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4391015
52384	chr10	+	2838	22	Antisense	novelGene_ENSMUSG00002076911.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	118	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGCGTGGCGCGGAGCGG	NA	False	NA	NA	False	NA	NA	NA	121435492	121462201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_121435542_121436697_121436812_121437147_121437263_121438133_121438326_121438933_121439224_121440253_121440489_121441485_121441557_121442145_121442241_121442625_121442738_121442894_121443062_121443464_121443543_121445030_121445101_121447346_121447461_121447581_121447617_121449126_121449300_121449390_121449562_121450901_121451129_121452519_121452586_121453033_121453094_121454997_121455081_121458761_121458899_121462017
52385	chr9	+	1581	5	NIC	ENSMUSG00000010057.9	novel	1736	9	NA	NA	-757	-5	intron_retention	FALSE	canonical	3	98	junction_2	12.0830459735946	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATATTGAGTACTGCTT	NA	False	NA	NA	False	NA	NA	NA	107420419	107422900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107420536_107420705_107420815_107421349_107421487_107421578_107422587_107422689
52386	chr15	+	2260	1	Intergenic	novelGene_3270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTCTGTGTCTTTGCAT	144	False	NA	NA	False	NA	NA	NA	33221529	33223789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_33221500_33223800
52387	chr1	+	565	1	Intergenic	novelGene_377	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTAGGCAGCATAGTAAG	NA	False	NA	NA	False	NA	NA	NA	63168136	63168701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_63168100_63168700
52389	chr5	-	2894	19	Antisense	novelGene_ENSMUSG00000013629.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	102	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGCATAGAGGCTGTAGC	5406	False	NA	NA	False	NA	NA	NA	31235823	31227977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_31228015_31229206_31229449_31229643_31229727_31229899_31230066_31230159_31230294_31230475_31230616_31230832_31231037_31231339_31231531_31231611_31231739_31231933_31232044_31232434_31232562_31233293_31233469_31233560_31233635_31234015_31234229_31234434_31234562_31234693_31234852_31234936_31235039_31235230_31235326_31235434
52390	chr7	+	1091	9	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	-22	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	877.287857191127	20	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCCCCTGTCTGGTGCC	8566	False	NA	NA	False	NA	NA	NA	27869169	27878690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27869244_27873928_27874059_27874223_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
52391	chr9	-	1028	1	ISM	ENSMUSG00000002028.14	ENSMUST00000114689.8	16470	36	76901	14	15719	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	40	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTATTGCTGCACTCTGC	5740	False	NA	NA	False	NA	NA	NA	44715693	44714665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_44714700_44715700
52393	chr2	-	2122	10	NIC	ENSMUSG00000026860.17	novel	1749	12	NA	NA	0	-23	intron_retention	FALSE	canonical	3	213	junction_4	53.8401841759365	356	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAATAAATCCTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	30249252	30234845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30235440_30235710_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
52394	chr11	+	1116	6	NNC	ENSMUSG00000020386.6	novel	1201	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	305.570024707922	9	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTTGGGCAGCTGT	3552	False	NA	NA	False	NA	NA	NA	51654500	51682752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673671_51680023_51680156_51682153
52395	chr2	-	1158	1	FSM	ENSMUSG00000081476.2	ENSMUST00000117207.2	597	1	-26	-535	-26	535	mono-exon	FALSE	NA	NA	NA	NA	NA	2275	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATATCCAAAATTTTAA	NA	False	NA	NA	False	NA	NA	NA	94215469	94214311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_94214300_94215500
52398	chr14	-	1081	1	Intergenic	novelGene_581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATCTTCTTCCCCAAACC	NA	False	NA	NA	False	NA	NA	NA	58108979	58107898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_58107900_58109000
52399	chr4	-	2928	4	ISM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	64991	1509	-1965	-935	internal_fragment	FALSE	canonical	3	63	junction_3	13.490737563232	1	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCTCCAATCAGGTTG	9595	False	NA	NA	False	NA	NA	NA	141200769	141196709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141196853_141197126_141197322_141197420_141197922_141198680
52400	chr11	+	1510	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4751.45582660959	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646406_75646507_75647642_75647850_75650117_75650255_75655445_75655988_75656256
52401	chr13	-	1347	8	NNC	ENSMUSG00000021477.10	novel	1971	8	NA	NA	6	-584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	463.663275074769	2	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGGGACTTCAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	64518114	64511611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516036_64516858_64516979_64518049
52402	chr2	-	1628	6	Antisense	novelGene_ENSMUSG00000027498.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGAATCGTGCCCGATCG	2909	False	NA	NA	False	NA	NA	NA	172222829	172212900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_172212947_172214847_172215049_172217594_172217832_172217966_172218166_172219531_172219925_172222277
52403	chr9	-	1479	8	NIC	ENSMUSG00000066839.13	novel	1673	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_7	80.1136947196461	40	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5896	False	NA	NA	False	NA	NA	NA	21996723	21983541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996652
52404	chrX	+	1227	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	13	0	-13	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCCAAAACCAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
52407	chr10	+	2742	2	FSM	ENSMUSG00000035759.5	ENSMUST00000040454.5	2744	2	-8	10	-8	-8	multi-exon	FALSE	canonical	3	23	junction_1	0	49	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTGTAAGAAGCATGTA	NA	False	NA	NA	False	NA	NA	NA	111134531	111137578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111134769_111135073
52408	chr16	-	1841	11	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-87	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_10	28.7090578041147	205	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	NA	False	NA	NA	NA	93400790	93380344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
52409	chr4	+	1958	2	NNC	ENSMUSG00000028517.9	novel	3159	6	NA	NA	17	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGCTGTTAAAAGGATG	NA	False	NA	NA	False	NA	NA	NA	105014560	105089971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_105014808_105088260
52410	chr5	-	1262	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	21	3921	2	11	multi-exon	FALSE	canonical	3	820	junction_1	20.5	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTTAGATAATACTTTT	3233	False	NA	NA	False	NA	NA	NA	121590548	121582807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121583636_121585203_121585343_121590253
52411	chr8	-	2767	4	NNC	ENSMUSG00000055707.14	novel	2991	3	NA	NA	3	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.4491125665032	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTGTGACCTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	70929596	70902887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70904555_70904849_70905670_70908115_70908299_70929499
52412	chr3	+	3510	7	FSM	ENSMUSG00000025766.15	ENSMUST00000146165.8	3574	7	56	8	11	1	multi-exon	TRUE	canonical	3	22	junction_1	8.72576007513895	107	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCTCATATTTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	41697108	41713366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
52413	chr5	-	1901	7	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	2	10	intron_retention	TRUE	canonical	3	167	junction_6	43.423304035199	37	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCATTGTCTGTGTTGG	5316	False	NA	NA	False	NA	NA	NA	143314964	143302233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310714_143311853_143311979_143314145_143314326_143314920
52415	chr19	-	3186	15	ISM	ENSMUSG00000025083.19	ENSMUST00000118800.8	3531	19	70873	-2	-87	2	3prime_fragment	FALSE	canonical	2	3	junction_7	2.71146469944319	25	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGTTTCCCTTGTATT	NA	False	NA	NA	False	NA	NA	NA	56925757	56900790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_56901841_56902556_56902686_56902801_56902996_56904103_56904260_56904493_56904675_56904755_56905005_56905557_56905670_56906413_56906560_56908808_56909021_56911366_56911472_56911964_56912050_56913498_56913589_56916680_56916861_56918487_56918694_56925666
52416	chr11	-	1442	10	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	895.107690603638	1	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9570	False	NA	NA	False	NA	NA	NA	5828227	5822187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824872_5826708_5826990_5828191
52417	chr10	-	1957	8	NIC	ENSMUSG00000019822.13	novel	1602	10	NA	NA	-2	1	intron_retention	FALSE	canonical	3	150	junction_7	18.9919424375449	3	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTAGTGGCTCTACCTTGT	NA	False	NA	NA	False	NA	NA	NA	41366367	41363172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41363579_41363667_41363822_41363988_41364306_41364428_41364512_41364729_41364820_41364926_41365348_41365459_41365557_41365978
52419	chr16	-	1559	9	ISM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	17521	0	2170	0	3prime_fragment	FALSE	canonical	3	19	junction_8	85.3097298085043	1203	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	38235986	38216478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679
52420	chr8	-	1537	11	ISM	ENSMUSG00000038000.11	ENSMUST00000211870.2	2722	12	-10	2299	7	-1	5prime_fragment	FALSE	canonical	3	32	junction_7	55.0807588909231	644	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGGAGAGAGATTCAGG	NA	False	NA	NA	False	NA	NA	NA	106427727	106424790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426793_106426913_106426991_106427078_106427173_106427334_106427472_106427551
52421	chr11	-	1626	4	ISM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	16811	0	-2809	0	3prime_fragment	FALSE	canonical	3	1121	junction_2	4.10960933531265	2	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	5968	False	NA	NA	False	NA	NA	NA	102891183	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975
52422	chr5	+	321	1	NIC	ENSMUSG00000013622.16	novel	1696	5	NA	NA	6	-3784	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTTTTGAATAATTTTA	938	False	NA	NA	False	NA	NA	NA	31206008	31206329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31206000_31206300
52423	chr15	-	2664	19	NIC	ENSMUSG00000062906.13	novel	2412	20	NA	NA	-3	-4	intron_retention	FALSE	canonical	3	26	junction_3	4.86642566628034	68	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAACACATCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	89012885	89007517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
52424	chr6	-	1398	2	Genic_Genomic	ENSMUSG00000051695.7	novel	1830	1	NA	NA	355	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAATGCTTCGTATTTG	NA	False	NA	NA	False	NA	NA	NA	86502948	86501482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_86502332_86502399
52425	chr8	-	1823	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-47	-4	-47	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	1	110	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760064	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
52426	chr15	+	1161	2	Intergenic	novelGene_3282	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCAGAGGATAACTATTC	NA	False	NA	NA	False	NA	NA	NA	41210853	41213875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_41211905_41213765
52427	chr15	+	1314	1	Intergenic	novelGene_3285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGACCCTGGATCAGA	NA	False	NA	NA	False	NA	NA	NA	41214482	41215796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_41214500_41215800
52429	chr2	-	1488	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	101	-43	-3	43	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	668	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGGGTGTGCACATTTT	7144	False	NA	NA	False	NA	NA	NA	13276125	13081779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
52430	chr6	+	2135	4	FSM	ENSMUSG00000025609.16	ENSMUST00000149859.5	545	4	-1472	-118	-1472	-3	multi-exon	FALSE	canonical	3	660	junction_1	20.5426385841741	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGTATATTTTTC	NA	False	NA	NA	False	NA	NA	NA	31468083	31484900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_31469720_31473603_31473707_31476821_31476877_31484559
52431	chr3	+	4416	30	NNC	ENSMUSG00000056476.14	novel	10159	43	NA	NA	103	-58584	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_27	3.99226362438795	10	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATGCCTCCAATTCTGG	NA	False	NA	NA	False	NA	NA	NA	58913348	59164739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_58913494_58914294_58914522_58938966_58939072_58944980_58945173_58946586_58946620_58949674_58949835_58975662_58975833_58979235_58979347_58980505_58980776_58983255_58983406_58984115_58984216_58984453_58984591_58990373_58990506_58993695_58993823_58998827_58999043_59000939_59001117_59135103_59135252_59139824_59139944_59140547_59140692_59142465_59142630_59148009_59148142_59152176_59152402_59153161_59153304_59154782_59154904_59155269_59155372_59156033_59156148_59159616_59159817_59163238_59163428_59164462_59164538_59164649
52432	chr3	+	940	8	ISM	ENSMUSG00000056476.14	ENSMUST00000199659.5	11006	44	250882	53644	307	-50864	internal_fragment	FALSE	canonical	2	5	junction_1	3.71977616179758	1	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGTATGAGGAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	59164789	59172459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_59164841_59165602_59165765_59167022_59167135_59168164_59168255_59169294_59169405_59169630_59169767_59170545_59170708_59172342
52433	chr2	+	1348	10	NNC	ENSMUSG00000000308.15	novel	1620	9	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.7554031993498	6	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAGCTGTCTGTGTTATT	1683	False	NA	NA	False	NA	NA	NA	121189138	121194213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121189225_121189410_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191678_121193155_121193291_121193455_121193582_121193978
52434	chr13	+	3162	1	NIC	ENSMUSG00000021361.8	novel	914	6	NA	NA	2086	-1047	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	71	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAACTCAGGACTTCTGG	NA	False	NA	NA	False	NA	NA	NA	41171853	41175015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_41171900_41175000
52435	chr12	+	2955	8	NNC	ENSMUSG00000032705.10	novel	3310	9	NA	NA	-361	-80	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	70.2270370633268	1	165	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTCTATTTTGGAATT	3267	False	NA	NA	False	NA	NA	NA	80522492	80544816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80522963_80527228_80527486_80531112_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
52436	chr11	-	1770	7	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	356	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	479.194376010404	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	120534113	120530256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120531165_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533981
52437	chr16	-	2843	2	NIC	ENSMUSG00000022760.18	novel	1248	5	NA	NA	19	-6	intron_retention	FALSE	canonical	3	43	junction_1	0	4	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGACTGCTGTTTGGCTT	7229	False	NA	NA	False	NA	NA	NA	17348957	17345947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17348722_17348888
52438	chr3	-	1045	8	Antisense	novelGene_ENSMUSG00000028138.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	6	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGGCTGGACCGTGCGT	NA	False	NA	NA	False	NA	NA	NA	138161077	138148890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_138148951_138151045_138151151_138152841_138152983_138153609_138153699_138156657_138156878_138157002_138157113_138160479_138160566_138160843
52439	chr5	-	198	1	Intergenic	novelGene_820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCGTGTGTAAAGGTCCT	6739	False	NA	NA	False	NA	NA	NA	113655002	113654804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_113654800_113655000
52442	chrX	+	1083	7	NIC	ENSMUSG00000025525.13	novel	1359	9	NA	NA	20	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	154.772323825102	36	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGCTTTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	111221082	111282451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111281890
52443	chr12	+	1016	7	NNC	ENSMUSG00000059060.16	novel	1759	8	NA	NA	-1	-181250	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	24.3156328315757	164	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTCCCTTTTCCTTCTT	8712	False	NA	NA	False	NA	NA	NA	79344123	79374180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_79344360_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994
52444	chr11	+	987	4	NNC	ENSMUSG00000040463.17	novel	856	7	NA	NA	103	-224	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1446.28036316922	1	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTATATGACGCCAATCT	NA	False	NA	NA	False	NA	NA	NA	72340566	72342370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72340660_72340818_72340921_72341454_72341601_72341724
52445	chr10	-	2584	8	ISM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	4823	3	4702	-3	3prime_fragment	FALSE	canonical	3	187	junction_6	44.3032223456046	1	135	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTGTGGTGGTAGCATT	NA	False	NA	NA	False	NA	NA	NA	57403803	57391872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760
52446	chr16	-	1835	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	-26	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1307.42750755061	1	109	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATTACATCCCCTTCTG	995	False	NA	NA	False	NA	NA	NA	11021154	11010859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011600_11012329_11012576_11014133_11014261_11014336_11014431_11017248_11017351_11017434_11017556_11019152_11019280_11020183_11020322_11021014
52447	chr11	+	1047	10	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	817.588836869022	43	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACACTACAACTCCAGTT	4531	False	NA	NA	False	NA	NA	NA	106146974	106153942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152460_106153009_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
52448	chr10	+	1662	8	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	61	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	399.645710445578	3	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCAGTGTCCTTGTTGCA	NA	False	NA	NA	False	NA	NA	NA	72490788	72510794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493155_72493221_72509797
52449	chr2	+	541	1	Intergenic	novelGene_2736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTTCTTTTCTTTT	3480	False	NA	NA	False	NA	NA	NA	152183023	152183564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_152183000_152183600
52450	chr1	+	3903	8	Antisense	novelGene_ENSMUSG00000026171.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	74	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTCTTGGCCGGAACCGG	6599	False	NA	NA	False	NA	NA	NA	74632915	74640532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_74633562_74633718_74633853_74634366_74634461_74634789_74634930_74635026_74635097_74637520_74637590_74637687_74637757_74637851
52451	chr7	-	1258	12	Fusion	ENSMUSG00000036835.8_ENSMUSG00000036845.13	novel	998	9	NA	NA	58	-6	multi-exon	FALSE	canonical	1	1	junction_9	207.704096578612	10	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAGTTGACAAATCTCA	1348	False	NA	NA	False	NA	NA	NA	30262608	30254875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866_30258962_30261748_30261854_30262220_30262364_30262476
52454	chr7	+	3498	5	NIC	ENSMUSG00000047473.15	novel	3558	5	NA	NA	-28	1	combination_of_known_junctions	FALSE	canonical	2	9	junction_4	7.96868872525461	20	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGATGTTAAACATGAATTA	NA	False	NA	NA	False	NA	NA	NA	29483480	29494128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29484327_29485643_29485729_29487473_29487601_29488765_29488862_29491784
52455	chr9	+	2540	9	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	-4	1554	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	156.286145819135	1	133	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTTATAAAGTCTGCTA	9210	False	NA	NA	False	NA	NA	NA	63509937	63549164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63510054_63523967_63524159_63524276_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63547483
52456	chr13	+	3274	12	NNC	ENSMUSG00000062822.9	novel	2627	14	NA	NA	54	-10	intron_retention	FALSE	canonical	0	0	junction_6	48.0462931035448	3	113	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATTTTGAACTATTTC	NA	False	NA	NA	False	NA	NA	NA	119599373	119622643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608702_119608777_119610368_119611465_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
52457	chr5	+	2205	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	-5	4	-5	-4	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	322	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTATGTATTTTATT	NA	False	NA	NA	False	NA	NA	NA	138115193	138132523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
52458	chr2	-	2604	8	NNC	ENSMUSG00000068290.12	novel	1238	9	NA	NA	-48	-3	intron_retention	FALSE	canonical	0	0	junction_6	179.288275451257	1	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGAGCTTGTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	130506133	130495957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503755_130503985_130505475_130505669
52459	chr8	+	2676	11	ISM	ENSMUSG00000031446.15	ENSMUST00000125514.8	2570	16	9413	-392	-6905	-186	3prime_fragment	FALSE	canonical	3	306	junction_2	35.7296795395649	2	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTTTAAGTATCATTTC	8343	False	NA	NA	False	NA	NA	NA	13182937	13197754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
52460	chr3	+	1414	5	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	132	662	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	423.082955813632	1	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	105866961	105875505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869337_105874478
52461	chr2	+	2181	14	FSM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	2	0	2	0	multi-exon	FALSE	canonical	3	86	junction_6	16.1728825562271	165	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCACTGTAATTAGGTGT	NA	False	NA	NA	False	NA	NA	NA	146697785	146812017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900_146733205_146777722_146777805_146783929_146784096_146784836_146784900_146792442_146792509_146794897_146794985_146798119_146798217_146811463_146811508_146811876
52462	chr4	-	1492	4	NNC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	15	-3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	257.725090401036	6	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGTTTCCTTATGTGTC	-21	True	NA	NA	False	NA	NA	NA	41741344	41738495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41739451_41740549_41740643_41740775_41740977_41741101
52463	chr4	-	1354	6	NIC	ENSMUSG00000028622.12	novel	1498	7	NA	NA	11	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	244.566064694184	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGCATTGGTGTGAGA	NA	False	NA	NA	False	NA	NA	NA	106924054	106913087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921783_106921968_106923646
52465	chr10	-	1094	8	NNC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	-5	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	781.149048987896	29	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGTGGTGGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	69188745	69174131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_69174427_69176310_69176418_69176611_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
52466	chr12	+	1084	1	Intergenic	novelGene_4412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATAATTGGTTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	77685105	77686189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_77685100_77686200
52467	chr17	+	1667	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112350.8	1723	14	54	2	26	-2	multi-exon	FALSE	canonical	3	649	junction_11	147.297388673592	1060	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACAGCCTTTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84013645	84100300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
52468	chr8	-	955	12	NNC	ENSMUSG00000031708.18	novel	1120	12	NA	NA	17	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	1493.14596608405	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321033	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299715_84299877_84299953_84300499_84300552_84301106_84301158_84320968
52469	chrX	-	1174	6	NIC	ENSMUSG00000015668.14	novel	1041	7	NA	NA	40	-4	intron_retention	FALSE	canonical	3	137	junction_5	172.779165410648	1609	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATACTACTGCTTGAAT	NA	False	NA	NA	False	NA	NA	NA	99669501	99666495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
52471	chr15	+	1911	7	NIC	ENSMUSG00000023051.12	novel	951	9	NA	NA	-7	-20	intron_retention	FALSE	canonical	3	32	junction_3	130.170934629134	25	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGCTTGTTCTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	102426925	102432089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102427038_102427556_102427727_102428909_102429013_102429572_102429649_102430158_102430232_102430415_102430987_102431283
52473	chr14	+	2123	5	NNC	ENSMUSG00000022055.8	novel	3380	4	NA	NA	0	-1208	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.5415211354536	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATATTTTGCTGTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	68321311	68325336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_68321888_68321936_68322459_68323422_68323548_68323935_68324256_68324756
52474	chr2	-	1456	12	NNC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	368.422009195303	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACACATACTATCTGGTT	NA	False	NA	NA	False	NA	NA	NA	130126354	130121241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130121647_130122182_130122244_130122376_130122472_130122880_130123023_130123132_130123187_130123304_130123459_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
52475	chr16	-	1564	14	NNC	ENSMUSG00000000028.16	novel	2143	20	NA	NA	-3	-4620	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	140.098105947014	1	49	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCAGCTTCTACGTGTC	NA	False	NA	NA	False	NA	NA	NA	18630344	18603822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18625948_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264
52476	chr16	+	1727	6	NNC	ENSMUSG00000022744.13	novel	1540	6	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	156.329139957975	19	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTGTCTAAATTGTTTG	NA	False	NA	NA	False	NA	NA	NA	58548413	58554601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201_58553770_58554035
52478	chr2	+	3004	2	Intergenic	novelGene_2777	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAACCAGGACTGCTAT	2636	False	NA	NA	False	NA	NA	NA	166038151	166041494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_166040310_166040648
52480	chr3	-	1889	2	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-1	0	intron_retention	FALSE	canonical	3	860	junction_1	0	54	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	NA	False	NA	NA	NA	87965803	87963826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_87965546_87965633
52481	chr1	-	1268	6	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-23	0	intron_retention	FALSE	canonical	0	0	junction_2	2539.58046929015	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16174649	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172709_16172824_16172915_16173559_16173733_16173909_16174588
52482	chr3	+	1282	3	ISM	ENSMUSG00000036632.10	ENSMUST00000044567.4	1471	10	10088	362	10054	-362	3prime_fragment	FALSE	canonical	3	513	junction_2	5.5	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTGCCTTTGTATATT	NA	False	NA	NA	False	NA	NA	NA	54653047	54656854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_54654039_54656028_54656115_54656649
52483	chr8	-	2119	8	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	4	intron_retention	FALSE	canonical	0	0	junction_3	81.869981541167	6	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578640	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571628_106571705_106571811_106571891_106572292_106573611_106573811_106575382_106576154_106576257_106576346_106576464_106576556_106578502
52484	chr8	-	3082	16	FSM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	80	3	46	-3	multi-exon	TRUE	canonical	3	127	junction_15	21.8259784049498	72	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGAGTGTCTTTGGGGAC	NA	False	NA	NA	False	NA	NA	NA	71229277	71220822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
52485	chr17	+	2863	19	NNC	ENSMUSG00000032796.9	novel	9526	63	NA	NA	-9480	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	58.0630776626103	1	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATTAATGGTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	68109920	68129636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_68110025_68111394_68111546_68112356_68112482_68114772_68114924_68116205_68116351_68116834_68116977_68117064_68117180_68117324_68117496_68118433_68118586_68119320_68119507_68120847_68120984_68122172_68122286_68122849_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283_68129415_68129455
52486	chr10	-	1597	11	NNC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	91.1809190565658	3	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATATATCTGTTTAATG	NA	False	NA	NA	False	NA	NA	NA	89568155	89547836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561707_89562541_89562623_89564015_89564085_89564761_89564880_89568035
52489	chr12	+	916	7	NNC	ENSMUSG00000021024.15	novel	1042	7	NA	NA	39	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	989.167958437797	28	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGCGGTGCATCCTGTC	NA	False	NA	NA	False	NA	NA	NA	55445618	55465236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55445777_55454253_55454349_55454786_55454869_55456975_55457068_55458971_55459151_55461188_55461284_55465021
52490	chr1	-	1391	8	NIC	ENSMUSG00000048495.17	novel	766	9	NA	NA	0	-11	intron_retention	FALSE	canonical	3	11	junction_4	41.2820067539437	39	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTACATAAAGTCTATTGG	NA	False	NA	NA	False	NA	NA	NA	57445630	57427409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
52491	chr1	+	1459	1	ISM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	127446	10	104849	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGATAATCAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	82421618	82423077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_82421600_82423100
52492	chr18	-	1919	9	Antisense	novelGene_ENSMUSG00000089296.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	12.5673187275568	1	62	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGATGCCAGCGGAGGGTG	NA	False	NA	NA	False	NA	NA	NA	38449921	38429704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_38429847_38432802_38432950_38433464_38433535_38434705_38434856_38440912_38441452_38442539_38442765_38446262_38446434_38447722_38447848_38449571
52493	chr17	+	2122	8	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1957	-3529	intron_retention	FALSE	canonical	3	34	junction_4	6.75519452430679	11	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATAACCATGAGGACCTA	NA	False	NA	NA	False	NA	NA	NA	57184459	57192375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57190498_57190626_57190861_57191750_57191969_57192083
52494	chr2	+	2625	7	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-1	-93	intron_retention	FALSE	canonical	3	26	junction_5	76.0694127462251	6	85	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGGAACGGGGGTGGGC	NA	False	NA	NA	False	NA	NA	NA	179713584	179727595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_179713680_179719796_179719936_179720411_179720617_179723878_179725254_179725856_179726106_179726243_179726383_179727172
52496	chr11	-	1254	7	ISM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	11606	52695	11606	11278	internal_fragment	FALSE	canonical	3	30	junction_5	6.11010092660779	11	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCAGCCTCCCCCACT	NA	False	NA	NA	False	NA	NA	NA	86236822	86210553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_86210858_86218627_86218739_86219272_86219436_86219993_86220189_86221813_86222012_86222708_86222855_86236685
52497	chr2	+	1703	4	NNC	ENSMUSG00000015932.9	novel	1911	4	NA	NA	205	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	754.542392594493	1	87	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143757444	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_143757568_143780304_143780610_143781871_143781949_143784046
52498	chr10	+	1922	11	NNC	ENSMUSG00000025359.11	novel	622	5	NA	NA	36	-114	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.2559669762407	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	128541084	128555993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128541092_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
52499	chr7	+	1855	14	NIC	ENSMUSG00000030589.16	novel	2296	17	NA	NA	2562	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	14.4868844989255	10	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGCCAGTCACACTCC	415	False	NA	NA	False	NA	NA	NA	28837059	28851046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28837151_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848557_28849223_28849261_28849346_28849482_28849603_28849717_28850870
52500	chr18	-	846	6	Antisense	novelGene_ENSMUSG00000064844.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCGCGAAGGCTACTGGG	NA	False	NA	NA	False	NA	NA	NA	75136345	75133592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_75133613_75134259_75134315_75134420_75134460_75134734_75135192_75135729_75135922_75136262
52501	chr6	+	1312	3	NNC	ENSMUSG00000035199.7	novel	1442	3	NA	NA	108	50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	190.5	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGATAATGATATTTGAAT	8556	False	NA	NA	False	NA	NA	NA	97187757	97210326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_97187958_97206497_97206666_97209382
52502	chr10	+	2188	1	Genic_Genomic	ENSMUSG00000020015.11	novel	NA	NA	NA	NA	119	1	mono-exon	FALSE	NA	NA	NA	NA	NA	66	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATTTTTGTGGAGTCACT	NA	False	NA	NA	False	NA	NA	NA	93075003	93077191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_93075000_93077200
52503	chr2	-	2156	8	ISM	ENSMUSG00000039033.12	ENSMUST00000099304.4	2127	13	5	142741	5	311	5prime_fragment	FALSE	canonical	3	57	junction_2	18.1186565254081	102	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAGGTATTTTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	139908700	139818140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
52505	chr5	+	3334	9	NNC	ENSMUSG00000029263.16	novel	4573	13	NA	NA	4714	-6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	25.0271727328518	1	110	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACATTAACTTTTGTCTG	3796	False	NA	NA	False	NA	NA	NA	108465215	108497215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108465339_108466690_108466880_108467761_108467904_108474682_108474896_108479840_108480059_108480549_108480832_108483969_108484428_108486420_108486617_108495702
52506	chr18	+	4130	1	ISM	ENSMUSG00000024383.10	ENSMUST00000096575.5	10684	17	69417	9	69417	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	30	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTGATTTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	32365665	32369795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_32365700_32369800
52507	chr9	+	2564	2	FSM	ENSMUSG00000041124.12	ENSMUST00000047173.10	2731	2	0	167	0	-167	multi-exon	FALSE	canonical	3	114	junction_1	0	2	110	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTCTGTTGACACACTA	13	False	NA	NA	False	NA	NA	NA	4383534	4386694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_4384143_4384738
52508	chr13	+	1278	11	NNC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	1	-857	intron_retention	TRUE	canonical	2	7	junction_5	189.526673584485	4	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCCTTTGTAGTAGAC	NA	False	NA	NA	False	NA	NA	NA	107083635	107095411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088347_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
52509	chr1	+	2489	13	Genic_Genomic	ENSMUSG00000102299.2	novel	235	1	NA	NA	-10966	23528	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	75	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGGAGGAGGAGCTAAGAG	NA	False	NA	NA	False	NA	NA	NA	155653903	155688632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_155654601_155655466_155655684_155657018_155657201_155658270_155658418_155659143_155659274_155662541_155662670_155665043_155665181_155666726_155666875_155667941_155668036_155670294_155670390_155671089_155671142_155679442_155679544_155688271
52510	chrX	-	1793	4	FSM	ENSMUSG00000025040.14	ENSMUST00000176638.8	448	4	-1	-1344	-1	10	multi-exon	FALSE	canonical	1	2	junction_1	110.948436471883	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATATCCTTGTTATTCT	NA	False	NA	NA	False	NA	NA	NA	17438493	17422792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_17424251_17434271_17434348_17437541_17437699_17438391
52512	chr9	-	1225	7	Antisense	novelGene_ENSMUSG00000062867.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGCCGTCCGGACCGC	NA	False	NA	NA	False	NA	NA	NA	108440681	108437667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108437825_108438226_108438281_108438794_108438897_108438980_108439578_108439988_108440076_108440332_108440502_108440622
52513	chr11	+	1821	5	FSM	ENSMUSG00000020484.20	ENSMUST00000063084.16	2129	5	306	2	-30	-2	multi-exon	FALSE	canonical	3	876	junction_4	35.2801289680182	227	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCCTGTTCTGTGATTTC	NA	False	NA	NA	False	NA	NA	NA	5470964	5475891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_5471201_5471922_5472020_5473332_5473468_5474238_5474385_5474684
52514	chr3	+	1631	13	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	14	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	528.784684966911	1	73	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAAGCGTGCTGGATT	NA	False	NA	NA	False	NA	NA	NA	32762927	32781114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763019_32766044_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32780643
52517	chr16	-	2325	7	ISM	ENSMUSG00000022718.13	ENSMUST00000128856.8	3410	8	20	1478	-8	-1295	intron_retention	FALSE	canonical	3	159	junction_4	18.2063786136129	3	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGAGTGTGGTGATCTT	NA	False	NA	NA	False	NA	NA	NA	18102407	18090587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_18090668_18095029_18095129_18095902_18096005_18096182_18096381_18098083_18098367_18098477_18098621_18100987
52518	chr6	+	1879	5	NIC	ENSMUSG00000030330.16	novel	1383	7	NA	NA	6	-5	intron_retention	FALSE	canonical	3	33	junction_2	46.8241390737726	21	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTATATGTGTGTGCGGT	7125	False	NA	NA	False	NA	NA	NA	125016816	125026222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125025201_125025330
52521	chr8	+	1545	6	NNC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.822578481376	102	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTAGAAGTGCATTCAT	NA	False	NA	NA	False	NA	NA	NA	75820231	75827214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513_75826878_75826915
52522	chr4	+	1971	7	Antisense	novelGene_ENSMUSG00000028776.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTCAAAGCCTGGAGTCA	2630	False	NA	NA	False	NA	NA	NA	130059401	130063480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_130060146_130060698_130060821_130061050_130061094_130061196_130061645_130061724_130061849_130062813_130062924_130063100
52523	chr15	-	1677	10	NNC	ENSMUSG00000061731.10	novel	7663	11	NA	NA	297	395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	37.2631615657682	47	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAAAATTGTGTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	52970967	52931664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_52932246_52936688_52936861_52939164_52939326_52946480_52946571_52951450_52951547_52953326_52953446_52955678_52955812_52965080_52965204_52969422_52969531_52970873
52524	chr15	+	3565	15	FSM	ENSMUSG00000022150.17	ENSMUST00000080880.12	4663	15	8	1090	8	-13	multi-exon	FALSE	canonical	2	3	junction_9	4.17230910471721	43	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATAATTTCTCTCATTCT	8122	False	NA	NA	False	NA	NA	NA	6416086	6469096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_6416414_6446286_6446476_6447710_6447851_6449219_6449319_6451715_6451848_6452566_6452648_6453406_6453434_6453677_6453732_6454115_6454179_6458776_6459431_6460434_6460589_6464645_6465282_6465871_6465979_6466463_6466532_6468262
52525	chr11	+	2293	11	FSM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	17	17	17	-17	multi-exon	FALSE	canonical	3	29	junction_1	8.17312669668102	54	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTTAGTCACATAACTG	NA	False	NA	NA	False	NA	NA	NA	117716766	117730717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
52527	chr8	+	1289	10	NNC	ENSMUSG00000031820.10	novel	1433	9	NA	NA	22	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	110.211917080988	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCAGTGGTGTATGGCT	NA	False	NA	NA	False	NA	NA	NA	71849526	71857257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71849665_71850322_71850498_71850613_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
52528	chr1	-	2801	13	NNC	ENSMUSG00000016181.11	novel	5570	12	NA	NA	4	450	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.339468404676	2	73	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTTTAATTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	192812511	192789610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_192790095_192794529_192794731_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
52529	chr8	+	1274	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	-9	-84	-9	1	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	1285	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTCTACTTCCTTA	NA	False	NA	NA	False	NA	NA	NA	53964752	53976457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
52530	chr17	+	2635	2	FSM	ENSMUSG00000033855.16	ENSMUST00000137138.2	767	2	-29	-1839	-29	34	multi-exon	FALSE	canonical	0	0	junction_1	0	17	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGATTCAATGAAATTAC	NA	False	NA	NA	False	NA	NA	NA	88905082	88945096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_88905170_88942548
52531	chr9	-	1229	12	Antisense	novelGene_ENSMUSG00000041506.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCAGGACAGAACGGTCCA	NA	False	NA	NA	False	NA	NA	NA	106362621	106358352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_106358422_106358510_106358552_106358956_106359086_106360110_106360236_106360315_106360410_106360754_106360857_106360945_106361081_106361164_106361226_106361407_106361554_106361636_106361716_106362272_106362347_106362447
52533	chr1	-	2032	4	NNC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	-5580	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	487.66199587647	1	96	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGATTTCGCCCTTTTTCC	9769	False	NA	NA	False	NA	NA	NA	119411389	119398039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_119399510_119403615_119403803_119405644_119405854_119411223
52534	chr8	+	1819	3	Intergenic	novelGene_1596	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	7.5	1	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTCTCACTGTGATGG	NA	False	NA	NA	False	NA	NA	NA	21129500	21134559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_21130001_21132381_21132462_21133320
52535	chr14	-	2856	2	FSM	ENSMUSG00000057156.11	ENSMUST00000142283.4	4713	2	72	1785	72	-21	multi-exon	FALSE	canonical	3	19	junction_1	0	40	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTGTTTCTTTTCTCC	5600	False	NA	NA	False	NA	NA	NA	55101543	55093028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55095739_55101397
52536	chr6	+	1952	9	NNC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	7	-32	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	243.16031234558	1	99	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAAGCCTAATTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	113024382	113045202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113024666_113026299_113026378_113032599_113033071_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
52537	chr11	+	1340	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	-24	0	-24	0	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	2	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4512	False	NA	NA	False	NA	NA	NA	106146955	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
52538	chr8	+	1462	7	NIC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	-19	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	193.176444963895	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCTCTCTGCATGTGTT	NA	False	NA	NA	False	NA	NA	NA	43633558	43646921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_43633650_43636158_43636403_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
52539	chr8	+	1080	4	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	93	3	intron_retention	FALSE	canonical	3	17818	junction_3	3209.20024651349	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCAAAAGCTGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	123829181	123831973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123829502_123829583_123830096_123830636_123830694_123831782
52540	chr10	-	859	5	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	3	3	intron_retention	FALSE	canonical	3	98	junction_2	1386.44031606124	63	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTTGTATTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	23663097	23661092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23661903_23662522_23662779_23662891_23662943_23663053
52541	chr8	-	3900	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	24	-2465	8	2465	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	1710	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCTCGGTGGAGGAGGTA	NA	False	NA	NA	False	NA	NA	NA	117648170	117612958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
52542	chr11	+	2263	1	FSM	ENSMUSG00000099101.3	ENSMUST00000184358.3	61	1	-112	-2090	-112	2090	mono-exon	FALSE	NA	NA	NA	NA	NA	39	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTTTAGATGATCCCAAT	NA	False	NA	NA	False	NA	NA	NA	78069540	78071803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78069500_78071800
52543	chr3	+	2490	19	ISM	ENSMUSG00000053965.11	ENSMUST00000066728.10	6939	21	170	7665	170	-7663	5prime_fragment	FALSE	canonical	1	1	junction_8	2.09423075833008	25	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGAGCCGGCTGTAAG	NA	False	NA	NA	False	NA	NA	NA	122522765	122645358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_122523017_122541537_122542127_122554526_122554617_122568201_122568274_122569904_122569995_122572583_122572722_122575215_122575284_122587908_122588018_122588882_122588971_122596680_122596857_122598198_122598259_122611569_122611717_122616704_122616831_122618563_122618659_122629201_122629290_122633190_122633292_122634619_122634698_122636693_122636758_122645298
52545	chr8	+	3346	3	Antisense	novelGene_ENSMUSG00000109982.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTCCTCTCGTGTAGGCC	NA	False	NA	NA	False	NA	NA	NA	14111218	14140318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_14114342_14128771_14128917_14140240
52546	chr11	+	1463	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	41	19	-24	-19	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	72	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAGGCAAGCTGGAAG	NA	False	NA	NA	False	NA	NA	NA	95275558	95282583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
52547	chr1	-	2132	1	FSM	ENSMUSG00000093178.3	ENSMUST00000175437.3	87	1	-1607	-438	-1607	438	mono-exon	FALSE	NA	NA	NA	NA	NA	122	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	NA	False	NA	NA	NA	10014381	10012249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_10012200_10014400
52549	chr14	+	693	2	NNC	ENSMUSG00000110273.2	novel	449	3	NA	NA	5910	281	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	4	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAGGAAGGAAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	100529510	100530292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_100529661_100529749
52550	chr9	-	1575	8	NNC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	21	1522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	769.474190998142	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	21061217	21050726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21051133_21052079_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053974_21054242_21054522_21061051
52551	chr5	+	1532	3	FSM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	-57	0	-42	0	multi-exon	FALSE	canonical	3	589	junction_1	28.5	662	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	NA	False	NA	NA	NA	135038502	135041024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135038972_135039740_135040520_135040740
52552	chr16	-	2435	17	FSM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	-37	0	-5	0	multi-exon	FALSE	canonical	3	59	junction_1	12.8608842522589	110	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8186	False	NA	NA	False	NA	NA	NA	4782074	4759299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
52553	chr4	-	1309	4	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.117073382335	2	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093648_41094764_41094839_41095144_41095272_41098001
52554	chr9	+	1068	8	FSM	ENSMUSG00000025785.6	ENSMUST00000026891.5	1053	8	-17	2	-17	0	multi-exon	FALSE	canonical	3	1140	junction_3	103.377058995362	3217	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGTGTTGTTAGCATCT	NA	False	NA	NA	False	NA	NA	NA	122942262	122965192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
52555	chrX	+	2754	9	NNC	ENSMUSG00000016409.5	novel	4230	9	NA	NA	27	-1387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	208.99686002426	1	123	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAACTTGAAATTATTTC	NA	False	NA	NA	False	NA	NA	NA	36390474	36413012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36391029_36394630_36394712_36400164_36400227_36400412_36400546_36403329_36403394_36405290_36405401_36405491_36405566_36406563_36406708_36411480
52556	chr1	+	1821	1	NIC	ENSMUSG00000061518.12	novel	625	4	NA	NA	-48	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	15	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATAGCTGGCTAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	36730642	36732463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_36730600_36732500
52557	chr11	+	2094	5	NNC	ENSMUSG00000040483.16	novel	2597	6	NA	NA	-41	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4.65698400254929	155	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCATCCTTTTAGAGCT	NA	False	NA	NA	False	NA	NA	NA	72192413	72204547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72192536_72194152_72194289_72199432_72199751_72202781_72202812_72203059
52558	chrX	-	886	4	ISM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	1650	5	1573	-5	3prime_fragment	FALSE	canonical	3	2128	junction_3	92.2942155404239	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAATGAATAAGTTAACTT	NA	False	NA	NA	False	NA	NA	NA	7535979	7534184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841
52559	chr7	+	3267	11	FSM	ENSMUSG00000016626.11	ENSMUST00000084763.5	3272	11	10	-5	10	-4	multi-exon	FALSE	canonical	2	8	junction_7	2.19089023002066	24	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCACAAGTGTCATGTTTT	NA	False	NA	NA	False	NA	NA	NA	106766206	106797305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_106766289_106780365_106780453_106780877_106782460_106783934_106784109_106785754_106785920_106789229_106789401_106790265_106790437_106791652_106791824_106795248_106795420_106796353_106796525_106796983
52560	chr4	+	3139	26	NNC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	10321	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	537.876991142027	1	139	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACGTGTTTCAGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	137331859	137383654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343133_137343666_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360427_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377617_137377723_137380268_137380328_137383432
52561	chr4	-	1177	5	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	917.474080015343	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTACAGGAACTTCTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41092900_41093055_41093703_41093781_41093840_41095144_41095272_41098001
52562	chr10	+	3238	9	FSM	ENSMUSG00000035620.16	ENSMUST00000095385.5	2909	9	-347	18	-307	-18	multi-exon	FALSE	canonical	3	55	junction_2	11.5325625946708	57	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGATGATTCAATTTAGC	NA	False	NA	NA	False	NA	NA	NA	84753172	84852293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84850939
52563	chr13	+	683	2	Genic_Genomic	ENSMUSG00000059751.8	novel	795	1	NA	NA	-21	42	multi-exon	FALSE	canonical	0	0	junction_1	0	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GATCAAAAAAAAAAATGCAG	NA	False	NA	NA	False	NA	NA	NA	108807115	108807973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_108807686_108807860
52565	chr12	+	3058	14	Antisense	novelGene_ENSMUSG00000035247.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGCATCCCAGGTGACA	NA	False	NA	NA	False	NA	NA	NA	51795403	51816118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_51795793_51797101_51797240_51798636_51798841_51800523_51800651_51800824_51800914_51800999_51801205_51801702_51801886_51803828_51803885_51806001_51806221_51807792_51807957_51809208_51809330_51810803_51810938_51814338_51814561_51815311
52568	chr14	-	1605	9	NNC	ENSMUSG00000007589.10	novel	2956	9	NA	NA	7	1105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.671676331442	5	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGGTCATTCCTCCGA	NA	False	NA	NA	False	NA	NA	NA	55919270	55916558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55916781_55916992_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
52570	SIRV4	+	1560	4	NNC	SIRV4C	novel	1567	3	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	670.708249207922	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	1009	3403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV4_+_1347_1678_1886_2251_2298_2433
52571	chr17	-	3893	26	Antisense	novelGene_ENSMUSG00000023805.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	17	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAACGCTGGCTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	6087780	6025878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_6026156_6036245_6036515_6040407_6040633_6047148_6047235_6053371_6053434_6055595_6055693_6058210_6058385_6060005_6060087_6060668_6060819_6060932_6061099_6063780_6063974_6066539_6066621_6067759_6067901_6069558_6069749_6072366_6072533_6073933_6074086_6075252_6075374_6076427_6076648_6076749_6076829_6077419_6077587_6078689_6078860_6079972_6080104_6082969_6083085_6084089_6084197_6085683_6085833_6087656
52572	chr6	+	2216	5	ISM	ENSMUSG00000001376.18	ENSMUST00000183532.8	1786	10	22325	7	-999	-7	3prime_fragment	FALSE	canonical	2	105	junction_2	31.693847983481	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTACCAGGTGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	3593018	3603308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
52573	chr4	-	4518	1	Antisense	novelGene_ENSMUSG00000054752.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGGACCAAAAAGACAGAAA	NA	False	NA	NA	False	NA	NA	NA	53706986	53702468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_53702500_53707000
52574	chr11	-	1571	11	NNC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	204.866908015912	2750	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTGAATGTTAATGTGT	NA	False	NA	NA	False	NA	NA	NA	59730638	59708629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721076_59723857_59723971_59727716_59727847_59730495
52575	chr17	-	2119	7	NIC	ENSMUSG00000024142.16	novel	3358	9	NA	NA	4	0	intron_retention	FALSE	canonical	3	60	junction_6	11.1716406832459	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGTTGCTCGGGAAGC	9591	False	NA	NA	False	NA	NA	NA	24698048	24694275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24697000_24697084_24697453_24697985
52576	chr17	-	644	6	Fusion	ENSMUSG00000118494.2_ENSMUSG00000092074.3	novel	3321	5	NA	NA	201	-2550	multi-exon	FALSE	non_canonical	0	0	junction_1	3402.14970864011	3	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6371810	6360818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_6361021_6361106_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6371724
52577	chr8	-	1018	12	NNC	ENSMUSG00000031708.18	novel	1120	12	NA	NA	65	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1187.24081120961	9	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84320985	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300475_84300552_84301106_84301158_84320968
52578	chr2	+	1031	7	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-2006	975	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1175.55613316516	2	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	NA	NA	NA	162914658	162925594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162914676_162917662_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
52579	chr13	-	1130	7	NNC	ENSMUSG00000021576.7	novel	1131	6	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	362.674670561189	3594	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCCTAGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	74465397	74451638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74452168_74453072_74453126_74453659_74453770_74457802_74457962_74459786_74459832_74464448_74464511_74465225
52580	chr11	+	2927	2	FSM	ENSMUSG00000044950.8	ENSMUST00000129229.2	1506	2	-500	-921	-500	921	multi-exon	FALSE	canonical	3	62	junction_1	0	51	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTATTTAAGAACTG	1013	False	NA	NA	False	NA	NA	NA	43595569	43613239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_43596305_43611047
52581	chr11	+	2080	2	NNC	ENSMUSG00000037573.6	novel	2288	2	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	74	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTATCCTGTGGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	94102288	94106321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_94102359_94104311
52582	chr10	-	1372	9	Antisense	novelGene_ENSMUSG00000035754.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCAGAGCTGTGCCGCG	3632	False	NA	NA	False	NA	NA	NA	79803490	79796054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79796206_79796833_79796945_79800757_79800891_79801040_79801184_79801811_79801954_79802033_79802302_79802391_79802559_79803151_79803221_79803302
52583	chr18	-	1877	6	Antisense	novelGene_ENSMUSG00000036743.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	75	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCCCGCCCGGAAGCGGT	3683	False	NA	NA	False	NA	NA	NA	14895691	14839234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_14839389_14859559_14859684_14864033_14864159_14890338_14890459_14890675_14890740_14894401
52584	chr5	+	1601	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	58	9	-9	-9	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTTATTTGCGTGTG	6944	False	NA	NA	False	NA	NA	NA	65548897	65566541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
52585	chr19	-	1070	5	NIC	ENSMUSG00000056209.8	novel	888	6	NA	NA	5	0	intron_retention	FALSE	canonical	3	216	junction_3	42.6753734605803	31	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4892	False	NA	NA	False	NA	NA	NA	45738025	45736172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737582_45737877
52586	chr15	-	2396	6	Intergenic	novelGene_3300	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	48	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAAGTGCCACTGCCAAT	NA	False	NA	NA	False	NA	NA	NA	62122821	62021132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_62021200_62047313_62047402_62047607_62047772_62114017_62114144_62114274_62114409_62121004
52587	chrX	+	1180	4	Intergenic	novelGene_4106	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGTGCACTGTAGCTGT	NA	False	NA	NA	False	NA	NA	NA	168794169	168800284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_168794716_168796372_168796695_168797002_168797193_168800162
52588	chr5	-	1549	2	FSM	ENSMUSG00000072694.9	ENSMUST00000234046.2	947	2	-15	-587	-15	587	multi-exon	FALSE	canonical	3	282	junction_1	0	642	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTTGGCGTCCTTCT	9578	False	NA	NA	False	NA	NA	NA	114961544	114959408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114960787_114961373
52589	chr8	+	1795	3	ISM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	116	-760	116	-5	3prime_fragment	FALSE	canonical	3	832	junction_1	576	320	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATAATGTGTGCTGTTC	NA	False	NA	NA	False	NA	NA	NA	85598937	85614845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85599462_85612563_85612753_85613763
52590	chr7	-	1756	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	59	1	-25	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	373	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGTCTTATCTTTG	9745	False	NA	NA	False	NA	NA	NA	44466023	44461680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44462945_44464412_44464707_44465825
52592	chr10	+	1725	3	NNC	ENSMUSG00000036478.9	novel	5001	2	NA	NA	11	954	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	230.5	202	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATCAATCTCTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	96452878	96455484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_96453100_96453177_96453335_96454137
52594	chr1	-	4247	22	NIC	ENSMUSG00000026365.16	novel	4361	22	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	2.84760312147163	27	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGCCTATGTACGTCT	NA	False	NA	NA	False	NA	NA	NA	140111032	140013596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_140014261_140016395_140016579_140026607_140026785_140028545_140028723_140029322_140029497_140030074_140030285_140030445_140030623_140033132_140033310_140036229_140036410_140036495_140036682_140040170_140040345_140046324_140046502_140047608_140047792_140063884_140064062_140064433_140064629_140071668_140071843_140075392_140075564_140082206_140082399_140084997_140085075_140090283_140090390_140090688_140090875_140110902
52595	chr14	-	760	3	NNC	ENSMUSG00000013701.14	novel	777	4	NA	NA	3	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2035.5	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGTCATAATTCCAACA	NA	False	NA	NA	False	NA	NA	NA	31923852	31902143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31902598_31920931_31920985_31923599
52596	chr7	+	1418	4	NNC	ENSMUSG00000011267.9	novel	1530	3	NA	NA	41	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	113.461692017859	2	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCTTTTTATTCTTATG	768	False	NA	NA	False	NA	NA	NA	19311252	19314563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_19311554_19311741_19311886_19313537_19314188_19314240
52597	chr10	-	2037	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218880.2	2005	11	-26	-6	1	-2	multi-exon	FALSE	canonical	0	0	junction_1	26.3901496774838	48	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTTGGTTTCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	33827217	33795139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_33795367_33803494_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
52598	chr7	-	2032	1	ISM	ENSMUSG00000048528.8	ENSMUST00000054562.4	3264	2	2726	2	2726	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	40	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTTGACGAATTATTC	NA	False	NA	NA	False	NA	NA	NA	132198640	132196608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_132196600_132198600
52599	chrX	-	739	6	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6497.58697979488	26	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230116_101231435_101231609_101231899_101231978_101232903
52600	chr15	-	730	5	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	70	3556	6	-11	5prime_fragment	FALSE	canonical	3	5733	junction_1	302.21060537314	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACCCACAGATGCCGA	NA	False	NA	NA	False	NA	NA	NA	31601880	31594501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
52601	chr14	+	3437	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	33	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	224.10241944254	1	203	18	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATTAAATTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	56640189	56726876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669103_56671777_56671859_56672063_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700482_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715037_56715152_56718144_56718271_56719423_56719652_56720530_56720682_56720820_56720940_56722619_56722702_56724418_56724535_56726767
52602	chr8	+	713	1	Intergenic	novelGene_1662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCATATGATGCAAAGTTAA	8022	False	NA	NA	False	NA	NA	NA	72581709	72582422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_72581700_72582400
52603	chr11	-	1760	14	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	164	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	241.223925530866	1	88	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	NA	False	NA	NA	NA	70852453	70833902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847144_70849097_70849266_70852407
52604	chr8	-	1371	3	Antisense	novelGene_ENSMUSG00000004565.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCCCTGGGGAGAGACGA	2892	False	NA	NA	False	NA	NA	NA	3581350	3573263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3574165_3574249_3574329_3580959
52606	chr2	+	1820	5	NNC	ENSMUSG00000035772.12	novel	2080	4	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	253.63556532947	2	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGTGTCAGACTCTCTA	NA	False	NA	NA	False	NA	NA	NA	28358096	28361179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434_28359842_28360071
52607	chr17	-	1338	3	NNC	ENSMUSG00000117916.2	novel	2579	3	NA	NA	2978	-982	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.5	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCACTTTCTCCTTTTTT	9227	False	NA	NA	False	NA	NA	NA	27458655	27455030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27455829_27455868_27456112_27458358
52608	chr11	+	2698	22	NNC	ENSMUSG00000059439.16	novel	3724	27	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	49.2927301194647	1	127	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGAGTTGCTGGGGTCA	3487	False	NA	NA	False	NA	NA	NA	85244001	85716884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_85244060_85245713_85245802_85256351_85256454_85261882_85261990_85286164_85286239_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386792_85400259_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467614_85467709_85471867_85472038_85651522_85651530_85716510
52609	chr5	+	1506	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	88	11	4	-11	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	1	81	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTGCAGCCTTCTT	4634	False	NA	NA	False	NA	NA	NA	29941025	29972090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
52611	chr8	-	1499	3	ISM	ENSMUSG00000031508.15	ENSMUST00000211690.2	2625	4	5527	-2	5527	0	3prime_fragment	FALSE	canonical	3	454	junction_1	47	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	9642	False	NA	NA	False	NA	NA	NA	11669099	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_11662948_11665814_11665911_11669061
52613	chr1	-	1330	2	ISM	ENSMUSG00000054387.14	ENSMUST00000185418.2	496	5	14130	-1098	-6875	1098	3prime_fragment	FALSE	canonical	3	363	junction_1	0	39	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTATGCAGTAGCTGCCT	NA	False	NA	NA	False	NA	NA	NA	132938938	132935736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_132936931_132938802
52614	chr1	-	1754	1	Intergenic	novelGene_443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTGGAAGGACAAATGAAAA	NA	False	NA	NA	False	NA	NA	NA	132935736	132933982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_132934000_132935700
52615	chr10	-	2020	14	FSM	ENSMUSG00000034758.13	ENSMUST00000072020.9	2015	14	-10	5	-10	-3	multi-exon	FALSE	canonical	3	36	junction_10	15.2183321404185	181	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGAGATTTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	81436744	81426743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
52616	chr13	+	3213	1	Genic_Genomic	ENSMUSG00000035958.4	novel	NA	NA	NA	NA	-10	1974	mono-exon	FALSE	NA	NA	NA	NA	NA	11	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATGCTGTCATTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	25015651	25018864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_25015700_25018900
52617	chr11	-	1903	14	NNC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	3	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	384.71287995075	1	76	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAGTTGACAGAAAAGGTG	4518	False	NA	NA	False	NA	NA	NA	6217743	6208934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212735_6213938_6214034_6214123_6214238_6214675_6214796_6215517_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
52618	chr10	-	1386	9	NNC	ENSMUSG00000020069.17	novel	1633	9	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_8	166.774548417917	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5787	False	NA	NA	False	NA	NA	NA	62859667	62851206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859416
52620	chr9	-	4135	8	FSM	ENSMUSG00000074500.12	ENSMUST00000034647.11	1701	8	152	-2586	15	1969	multi-exon	FALSE	canonical	1	1	junction_1	1.39970842444753	5	110	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATAATAAAGTACTATAA	1321	False	NA	NA	False	NA	NA	NA	18384703	18364901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_18368349_18368796_18368892_18370952_18371049_18379215_18379343_18379909_18379999_18380574_18380693_18384181_18384291_18384649
52622	chr9	+	629	5	NNC	ENSMUSG00000032518.7	novel	1101	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2424.18341921563	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956857	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956884_119959281_119959430_119959833_119959963_119960065_119960232_119960465
52623	chr11	-	3526	6	FSM	ENSMUSG00000049680.18	ENSMUST00000093362.12	5089	6	-5	1568	-5	2	multi-exon	FALSE	canonical	3	47	junction_5	4.96386945839634	46	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGTTGAATGTATACTC	8842	False	NA	NA	False	NA	NA	NA	5691155	5664984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5668264_5672801_5672841_5673110_5673162_5676347_5676419_5676830_5676858_5691096
52624	chr3	+	1383	8	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	96.1745861462796	322	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7756	False	NA	NA	False	NA	NA	NA	115681829	115722737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718950_115720345_115720450_115722157
52625	chr14	+	2549	4	Antisense	novelGene_ENSMUSG00002075443.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	857	51	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGCGAGCTAGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	61576714	61597868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_61578853_61579535_61579675_61584819_61584895_61597671
52626	chr8	+	675	4	NNC	ENSMUSG00000008450.9	novel	948	5	NA	NA	14614	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1717.0836386799	42	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTAAATTGTTTTAATTAG	NA	False	NA	NA	False	NA	NA	NA	106602228	106605969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106602291_106602985_106603058_106603141_106603150_106605436
52627	chr15	+	2189	3	FSM	ENSMUSG00000022346.18	ENSMUST00000161976.8	2338	3	159	-10	-14	10	multi-exon	FALSE	canonical	3	22	junction_2	2	161	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGGGCCAACTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	61857398	61862209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_61857801_61859355_61860128_61861194
52628	chr1	-	1305	7	NNC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	167.450241365408	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	NA	False	NA	NA	NA	44141539	44125772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44140958_44141118_44141487
52629	chr4	-	1359	1	ISM	ENSMUSG00000014592.22	ENSMUST00000097774.9	8533	23	800973	20	18890	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	17	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAGAAAATTTCCCCA	9119	False	NA	NA	False	NA	NA	NA	151145360	151144001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_151144000_151145400
52630	chr19	+	449	6	NNC	ENSMUSG00000024791.11	novel	2024	6	NA	NA	113	-1333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	185.908579683671	2	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCCGGCTAGAACGCTC	NA	False	NA	NA	False	NA	NA	NA	6135125	6140474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140154_6140405
52631	chr10	-	2585	18	ISM	ENSMUSG00000020167.15	ENSMUST00000020379.13	2829	19	2568	-73	15	-6	3prime_fragment	TRUE	canonical	3	581	junction_5	204.144378653051	154	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTCAAAAGACCCAGTGT	NA	False	NA	NA	False	NA	NA	NA	80266901	80245386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_80246109_80246231_80246459_80249038_80249172_80250995_80251123_80251198_80251358_80251686_80251761_80252393_80252473_80252564_80252624_80252923_80253060_80253146_80253305_80253371_80253475_80254599_80254650_80255300_80255434_80255854_80255923_80256921_80257001_80257165_80257240_80263504_80263578_80266770
52632	chr2	-	2171	9	NIC	ENSMUSG00000002105.16	novel	2469	10	NA	NA	3	-5	combination_of_known_junctions	TRUE	canonical	1	5	junction_5	17.0105665690476	35	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCTGCCTCTTCCACATA	4358	False	NA	NA	False	NA	NA	NA	90900571	90892140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895926_90896046_90896357_90896472_90898775_90899085_90900499
52633	chr16	+	3049	10	NNC	ENSMUSG00000033031.14	novel	3079	10	NA	NA	-2027	-1021	intron_retention	FALSE	non_canonical	0	0	junction_1	101.078016561955	1	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAAACAGTTATCATTTG	7860	False	NA	NA	False	NA	NA	NA	48826746	48838993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48827552_48829439_48829541_48831071_48831189_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48836421_48836641_48836725_48837714_48837855_48838737
52634	chr7	+	2123	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	13	-798	13	798	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	1042	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCCAGGCTCCTTTCAA	9931	False	NA	NA	False	NA	NA	NA	49408913	49424521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
52635	chr15	-	2658	1	NIC	ENSMUSG00000115049.2	novel	935	6	NA	NA	18657	-76	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	82	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGGGCAAGACTCCGCCT	NA	False	NA	NA	False	NA	NA	NA	95873353	95870695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_95870700_95873400
52636	chr2	-	3783	1	FSM	ENSMUSG00000084516.3	ENSMUST00000122567.3	80	1	-1332	-2371	-1332	2371	mono-exon	FALSE	NA	NA	NA	NA	NA	43	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGCAAACAGCTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	104260617	104256834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_104256800_104260600
52638	chr15	+	2592	7	NNC	ENSMUSG00000023034.8	novel	893	2	NA	NA	1003	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	68.8486665730636	195	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	101165729	101172676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101165971_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
52639	chr3	+	1683	16	NNC	ENSMUSG00000027787.15	novel	9135	16	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	423.239706181838	1	65	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTGTTGTGAAGGTTT	NA	False	NA	NA	False	NA	NA	NA	69629398	69656375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636665_69636752_69637737_69637839_69638909_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650850_69650962_69652545_69652619_69654061_69654169_69655630_69655706_69656111
52640	chr6	-	1369	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5448	-4	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	36.2724068680312	290	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTAGATTTAGGCGGACT	2732	False	NA	NA	False	NA	NA	NA	83675077	83669791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672939_83673961_83674051_83674952
52641	chr8	-	3366	17	ISM	ENSMUSG00000031502.12	ENSMUST00000033898.10	6615	52	94099	11	-1458	-3	3prime_fragment	FALSE	canonical	3	53	junction_12	8.12956602470267	50	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATACCTTAGATCATTTT	NA	False	NA	NA	False	NA	NA	NA	11268727	11248433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_11249883_11251657_11251831_11252893_11253009_11256225_11256404_11257193_11257407_11258232_11258332_11259521_11259651_11260759_11260832_11261763_11261837_11262601_11262736_11263503_11263690_11264651_11264703_11266700_11266800_11267264_11267346_11267433_11267561_11267912_11268053_11268680
52642	chr2	+	1612	12	NNC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	7	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	516.629157085054	1	81	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTATAAAAATAGCCAATA	NA	False	NA	NA	False	NA	NA	NA	69691973	69701841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69692057_69693567_69693660_69696533_69696606_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
52643	chr9	-	4222	7	NNC	ENSMUSG00000002028.14	novel	16470	36	NA	NA	5376	-1338	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	2.28521820013368	19	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATCCAATAAGCACCATG	9192	False	NA	NA	False	NA	NA	NA	44726036	44715989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44719475_44720360_44720491_44721011_44721096_44721932_44722041_44722202_44722378_44724283_44724359_44725871
52644	chr17	+	1266	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	-54	-1	-14	1	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	474	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGTTTCCGTGTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	24955601	24961746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
52645	chr15	-	2370	6	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	8159	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1016.65872346624	1	134	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCAAACTGGATCTTG	NA	False	NA	NA	False	NA	NA	NA	81261968	81247883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249762_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888
52646	chr10	+	1269	11	ISM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	248	1901	7	-519	5prime_fragment	FALSE	canonical	3	966	junction_8	237.135826057557	1	53	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCAGCTGGGTAAGGACCA	1631	False	NA	NA	False	NA	NA	NA	79690508	79698365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282
52647	chrX	+	2559	15	NNC	ENSMUSG00000025332.15	novel	6449	26	NA	NA	-11	98	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	139.033489578913	3	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	151016238	151056866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045225_151056557
52648	chr11	-	1075	7	ISM	ENSMUSG00000009079.17	ENSMUST00000093365.12	1290	9	-9	2714	-8	-1110	5prime_fragment	FALSE	canonical	3	4392	junction_6	541.019639199909	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAGAAAGTGATAGCTAT	NA	False	NA	NA	False	NA	NA	NA	5049075	5033131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
52649	chr12	+	3456	13	NIC	ENSMUSG00000021262.16	novel	1870	13	NA	NA	35	-5	intron_retention	FALSE	canonical	3	19	junction_1	47.8036347990401	37	40	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCAAACTCAGGCTCTGG	NA	False	NA	NA	False	NA	NA	NA	108572059	108654767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_108572271_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108649606_108649670_108652308_108652376_108652666
52650	chr14	-	2377	4	NNC	ENSMUSG00000022054.12	novel	3334	3	NA	NA	0	-262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.6144555520604	19	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAATGTGTGGTGATGTG	NA	False	NA	NA	False	NA	NA	NA	68362295	68356993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_68357328_68358022_68358834_68360269_68360395_68361188
52651	chr17	-	2019	2	FSM	ENSMUSG00000047407.18	ENSMUST00000135007.3	1291	2	39	-767	39	-3	multi-exon	FALSE	canonical	3	880	junction_1	0	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTGCAATGAAGAGCATT	NA	False	NA	NA	False	NA	NA	NA	71154126	71151208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71152268_71153166
52652	chr5	-	1689	10	FSM	ENSMUSG00000035234.19	ENSMUST00000200657.5	1668	10	-25	4	0	-4	multi-exon	FALSE	canonical	3	80	junction_1	36.8299395118217	205	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTGTAATATCTTAT	NA	False	NA	NA	False	NA	NA	NA	100968831	100953061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100953318_100953763_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
52653	chr15	-	2427	8	ISM	ENSMUSG00000001288.16	ENSMUST00000043172.15	2953	10	4944	7	67	-5	3prime_fragment	FALSE	canonical	3	7	junction_7	23.6453386699435	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAATCCGGGTGTGGAT	NA	False	NA	NA	False	NA	NA	NA	102161008	102143379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102160853
52654	chr3	-	2199	6	ISM	ENSMUSG00000074238.7	ENSMUST00000051737.8	2662	10	20502	1	298	-1	3prime_fragment	FALSE	canonical	3	421	junction_4	24.0249869927124	132	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATTTGCATCATGGCT	NA	False	NA	NA	False	NA	NA	NA	127610658	127600661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558
52655	chr7	+	824	6	NNC	ENSMUSG00000006333.15	novel	751	5	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6570.63908611636	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTTTATTGGTGTG	1309	False	NA	NA	False	NA	NA	NA	3707036	3709888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3707064_3707325_3707448_3707644_3707768_3708501_3708628_3708731_3708919_3709649
52656	chr10	+	1661	3	ISM	ENSMUSG00000019767.13	ENSMUST00000019901.7	2151	11	39731	-1014	16608	-106	3prime_fragment	FALSE	canonical	0	0	junction_2	0.5	8	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTACCACTTGTAAC	NA	False	NA	NA	False	NA	NA	NA	4499602	4512125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_4499800_4508496_4508734_4510898
52657	chr10	+	928	1	Genic_Genomic	ENSMUSG00000019767.13	novel	NA	NA	NA	NA	29236	927	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATAAATTGTCTCTGATT	NA	False	NA	NA	False	NA	NA	NA	4512230	4513158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_4512200_4513200
52658	chr13	-	2744	3	ISM	ENSMUSG00000044934.14	ENSMUST00000134136.2	562	5	5958	-2496	5958	-16	3prime_fragment	FALSE	canonical	3	44	junction_2	6.5	101	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATTTAAAGCATAAAGTAC	NA	False	NA	NA	False	NA	NA	NA	64292070	64280847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_64283351_64290021_64290161_64291968
52659	chr15	-	1521	4	FSM	ENSMUSG00000064284.13	ENSMUST00000125947.8	706	4	-540	-275	14	0	multi-exon	FALSE	canonical	3	301	junction_1	22.0151463012778	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8152	False	NA	NA	False	NA	NA	NA	85695831	85691172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102
52660	chr10	-	982	5	FSM	ENSMUSG00000061904.13	ENSMUST00000167455.8	891	5	129	-220	129	0	multi-exon	FALSE	canonical	3	3785	junction_3	317.741246929007	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90955570	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388
52661	chrX	+	1639	6	Antisense	novelGene_ENSMUSG00000006678.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTATTGGGTGTCGATGG	NA	False	NA	NA	False	NA	NA	NA	92348390	92518003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_92349423_92419196_92419291_92464172_92464289_92504973_92505106_92506898_92507083_92517922
52662	chr5	+	1245	5	ISM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	410	877	410	-877	3prime_fragment	FALSE	canonical	3	14794	junction_3	249.215142998976	1	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGGCCTTCAGAAGTTAG	955	False	NA	NA	False	NA	NA	NA	129097745	129100510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
52663	chr7	+	2599	13	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-402	-40	intron_retention	FALSE	canonical	0	0	junction_6	653.577011317123	3	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATACGAATTTGCTCAT	2478	False	NA	NA	False	NA	NA	NA	5064739	5082891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5071731_5071792_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
52664	chr14	+	3132	1	Genic_Genomic	ENSMUSG00000019297.10	novel	NA	NA	NA	NA	5579	2436	mono-exon	FALSE	NA	NA	NA	NA	NA	123	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTCCAGACCCTACGG	NA	False	NA	NA	False	NA	NA	NA	55992261	55995393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_55992300_55995400
52665	chr8	+	1599	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	183	6	-24	-6	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	1368	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGATTGTTTTGCTTTTT	5899	False	NA	NA	False	NA	NA	NA	84682318	84696820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
52666	chr10	-	1161	7	NNC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	670	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	826.396528442746	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGGTGGCTGTTAATT	NA	False	NA	NA	False	NA	NA	NA	69185990	69174128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_69174427_69176310_69176453_69176544_69176749_69178369_69178541_69180890_69181015_69181904_69182062_69185925
52667	chr16	+	1439	3	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	-77	616	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGATCTTCAATAAATTT	NA	False	NA	NA	False	NA	NA	NA	24348066	24349728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_24348541_24348642_24348715_24348835
52668	chr1	-	2717	7	NNC	ENSMUSG00000054702.15	novel	2876	5	NA	NA	16	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.03464719546263	54	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATATGTTAATGTTGAACT	NA	False	NA	NA	False	NA	NA	NA	79649666	79584603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_79584845_79585161_79586920_79590617_79590810_79591919_79592058_79601398_79601508_79602823_79603003_79649566
52669	chr19	+	2226	16	NNC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	-4	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	199.223827222884	1	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTGTTTTGCCAGAATCT	NA	False	NA	NA	False	NA	NA	NA	45352245	45517719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_45352326_45394983_45395026_45411571_45411668_45444964_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
52671	chr8	-	2286	3	NIC	ENSMUSG00000031887.14	novel	1689	5	NA	NA	11	0	intron_retention	FALSE	canonical	3	50	junction_2	8	72	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTGCACGCCTTTAAT	522	False	NA	NA	False	NA	NA	NA	105991224	105984917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105985928_105986068_105987313_105991192
52672	chr11	+	1980	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	1	3	1	-3	multi-exon	FALSE	canonical	3	52	junction_2	3.96074487943871	169	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGTGTTGAGTTCATTG	NA	False	NA	NA	False	NA	NA	NA	80074677	80090580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
52673	chr9	-	905	1	NIC	ENSMUSG00000091537.3	novel	944	4	NA	NA	3473	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	20	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCATTTGTGTGTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	108907960	108907055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108907100_108908000
52675	chr8	-	2430	17	Antisense	novelGene_ENSMUSG00000000738.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	173	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCAAAGTCATCTTCAAC	NA	False	NA	NA	False	NA	NA	NA	123824488	123793027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_123793097_123793209_123793313_123797112_123797203_123800485_123800728_123803584_123803730_123804556_123804660_123806150_123806277_123806705_123806869_123807373_123807549_123814065_123814189_123815680_123815785_123816860_123816971_123818370_123818488_123820327_123820484_123821209_123821378_123821894_123821974_123824131
52676	chr8	-	1823	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	221	0	7	0	multi-exon	FALSE	canonical	3	690	junction_2	21.3822356174466	1	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	65186605	65171172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
52678	chr3	+	3747	23	NNC	ENSMUSG00000025437.16	novel	3886	24	NA	NA	80	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	150.773679663723	1	201	15	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAAACTGAATGTTGAAT	NA	False	NA	NA	False	NA	NA	NA	152052231	152098968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072459_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152084468_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
52679	chr11	-	1604	13	NNC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	105	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	97.0760011537352	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8477	False	NA	NA	False	NA	NA	NA	82799063	82791593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795773_82796130_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82798971_82799013
52681	chr17	-	1736	12	NNC	ENSMUSG00000024039.16	novel	2474	16	NA	NA	-2058	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	117.027862755658	1	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCGTGTCGACCTTATTT	5974	False	NA	NA	False	NA	NA	NA	31844090	31831613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31836973_31837055_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972
52683	chr1	+	1986	12	NNC	ENSMUSG00000026117.11	novel	1338	6	NA	NA	293	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.0288908414713	128	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTATTCTCATCTTCCC	NA	False	NA	NA	False	NA	NA	NA	36810365	36821898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_36810664_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
52684	chr10	+	2376	7	Antisense	novelGene_ENSMUSG00000020078.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	139	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAAAAAGCCTCCAAGAA	NA	False	NA	NA	False	NA	NA	NA	62291024	62316462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62292638_62294705_62294845_62299468_62299538_62300409_62300515_62304065_62304230_62305675_62305838_62316338
52686	chr3	-	2028	13	NNC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_4	241.98362834888	3	81	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	NA	False	NA	NA	NA	127346908	127330362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336803_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
52687	chr16	+	1471	2	Genic_Genomic	ENSMUSG00000116875.2	novel	969	1	NA	NA	-77	655	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	24348066	24349767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_24348250_24348479
52688	chrX	+	2013	2	Antisense	novelGene_ENSMUSG00000031229.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGCTAGTTCCATTTTA	NA	False	NA	NA	False	NA	NA	NA	104909155	104915943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_104911153_104915927
52689	chr15	-	3374	21	NNC	ENSMUSG00000022454.18	novel	3220	21	NA	NA	-58495	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	3.2542280190546	21	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTACCTTACGCCATGCG	NA	False	NA	NA	False	NA	NA	NA	95484935	95117341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_95118036_95126964_95127190_95129177_95129355_95130364_95130559_95139417_95139559_95194039_95194136_95196738_95196862_95244642_95244769_95272608_95272738_95281506_95281610_95282945_95283038_95327758_95327862_95329419_95329549_95330475_95330559_95330731_95330805_95332942_95333040_95333137_95333312_95371389_95371541_95425157_95425287_95425681_95425768_95484686
52690	chr4	+	1141	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	475	2	475	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTGTTTGAAATAATTT	NA	False	NA	NA	False	NA	NA	NA	86494379	86495520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_86494400_86495500
52691	chr10	+	4003	2	ISM	ENSMUSG00000019883.12	ENSMUST00000161426.2	634	6	-105	13202	58	-13202	5prime_fragment	FALSE	canonical	3	92	junction_1	0	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAATTTGCATGCAAGA	NA	False	NA	NA	False	NA	NA	NA	29189553	29197329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_29189730_29193502
52692	chr3	-	2151	2	FSM	ENSMUSG00000028076.13	ENSMUST00000142793.2	667	2	3	-1487	3	-1068	multi-exon	FALSE	canonical	3	57	junction_1	0	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGCCAGATCCTGATCA	NA	False	NA	NA	False	NA	NA	NA	86906645	86904208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86906213_86906498
52693	chr7	-	2163	8	NIC	ENSMUSG00000040488.19	novel	4726	29	NA	NA	11410	382	intron_retention	FALSE	canonical	3	315	junction_4	92.5925901738473	1	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTTAGACTGATCCTTA	NA	False	NA	NA	False	NA	NA	NA	27021628	27006602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27007346_27008345_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446
52694	chr14	+	1095	10	NIC	ENSMUSG00000022204.10	novel	1200	11	NA	NA	49	2	combination_of_known_splicesites	FALSE	canonical	2	17	junction_9	477.441354423326	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTTTGCCATACATTG	NA	False	NA	NA	False	NA	NA	NA	55252959	55261596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55261445
52695	chr17	-	1916	19	NNC	ENSMUSG00000073460.6	novel	2092	19	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	32.9796046214574	194	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTCTGTACATGGCCAG	2972	False	NA	NA	False	NA	NA	NA	13128835	13107618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125534_13127939_13128014_13128348_13128407_13128722
52698	chr2	+	2613	2	Intergenic	novelGene_2662	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCCTCCTGTTTGCAGAA	NA	False	NA	NA	False	NA	NA	NA	77115003	77139784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_77117453_77139620
52699	chr1	-	2382	12	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	2	2	intron_retention	FALSE	canonical	3	297	junction_10	47.5590976427754	247	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAAGTGATGTTCATGT	NA	False	NA	NA	False	NA	NA	NA	171115526	171109529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171109877_171110070_171110186_171110268_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
52700	chr15	-	1053	6	NNC	ENSMUSG00000022474.16	novel	1059	7	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	428.383659819093	5	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845065	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81844901
52701	chr1	-	1617	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14679	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_9	101.707763399863	31	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	2987	False	NA	NA	False	NA	NA	NA	33677084	33492890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33676802
52702	chr11	-	1920	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	-588	0	588	multi-exon	FALSE	canonical	3	946	junction_1	0	1284	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCTTTAAAAATATGTAAT	NA	False	NA	NA	False	NA	NA	NA	73067863	73065756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_73067578_73067764
52704	chr17	-	2669	8	Antisense	novelGene_ENSMUSG00000007603.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGAAAGTCTTCCGGGTC	5066	False	NA	NA	False	NA	NA	NA	57076650	57071825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_57071938_57072533_57072791_57073779_57074674_57074781_57074929_57075026_57075896_57076045_57076125_57076248_57076441_57076531
52705	chr2	+	2120	5	NNC	ENSMUSG00000027463.15	novel	2669	5	NA	NA	34	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	42.4529150942547	10	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGCTTATCCAGGTACTC	NA	False	NA	NA	False	NA	NA	NA	151838488	151851161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151838572_151845971_151846400_151847750_151847940_151849400_151849525_151849865
52706	chrX	-	2616	5	Intergenic	novelGene_3981	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_4	7.15454401062709	68	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACTCATCAACTATGTG	NA	False	NA	NA	False	NA	NA	NA	95011522	95004084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_95005914_95006619_95006707_95008523_95008599_95008695_95008875_95011076
52707	chr10	+	1901	4	NNC	ENSMUSG00000061759.16	novel	5044	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	90.5428075553216	16	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	4382605	4405140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4382712_4384827_4384934_4389491_4389741_4403700
52708	chr13	+	1516	9	NIC	ENSMUSG00000054021.7	novel	1367	8	NA	NA	137	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	67.4906243488679	6	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATTTTTTTGTACTT	NA	False	NA	NA	False	NA	NA	NA	43519298	43548678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_43519457_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
52709	chr19	-	1264	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	1780	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5820	False	NA	NA	False	NA	NA	NA	46327101	46318978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
52710	chr4	-	1494	1	NIC	ENSMUSG00000036114.4	novel	856	2	NA	NA	8	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	82	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	-17	True	NA	NA	False	NA	NA	NA	41713526	41712032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41712000_41713500
52711	chr2	-	1260	6	Antisense	novelGene_ENSMUSG00000027332.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCCAGCTTGTCAAG	3707	False	NA	NA	False	NA	NA	NA	118711765	118705195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_118705240_118706793_118706890_118707367_118707447_118708137_118708272_118708353_118708427_118710931
52712	chr8	-	937	1	Intergenic	novelGene_1616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCCAAATATGCTGACCC	NA	False	NA	NA	False	NA	NA	NA	34352559	34351622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_34351600_34352600
52713	chr11	+	2887	13	Antisense	novelGene_ENSMUSG00000017146.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	35	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCGCAGCCGCAATTACAAT	2815	False	NA	NA	False	NA	NA	NA	101399003	101442688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_101399057_101400750_101400925_101403544_101403676_101408096_101408269_101413257_101413329_101418826_101418904_101420616_101420667_101421821_101421918_101422839_101422988_101424764_101426432_101430806_101430865_101439843_101439940_101442594
52714	chr14	+	2913	4	NNC	ENSMUSG00000005148.9	novel	3352	4	NA	NA	-86	-3	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	1681.58701496202	3	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTGGTGCCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	99536040	99552469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99536137_99538816_99539691_99540853_99540914_99550586
52715	chr4	+	1890	9	FSM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	11	14	11	-14	multi-exon	FALSE	canonical	3	69	junction_1	14.2560294261761	315	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCACTGTCATCTGTCCTT	53	False	NA	NA	False	NA	NA	NA	103171019	103223626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
52716	chr7	+	3518	9	FSM	ENSMUSG00000034690.14	ENSMUST00000208360.2	3058	9	59	-519	59	1	multi-exon	FALSE	canonical	2	7	junction_3	4.89738450603993	1	125	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGATGACTTCTAATTTCA	NA	False	NA	NA	False	NA	NA	NA	6063564	6108150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6063871_6068377_6069951_6075560_6075720_6076110_6076276_6087542_6087711_6095465_6095637_6101828_6102000_6103751_6103923_6107516
52717	chr8	-	2825	16	NIC	ENSMUSG00000031755.7	novel	3064	17	NA	NA	451	-6	intron_retention	FALSE	canonical	1	2	junction_14	7.78602737101676	4	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTCCTTGTTGTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	94825105	94794587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
52718	chr8	-	1833	6	ISM	ENSMUSG00000003316.15	ENSMUST00000164283.8	2858	21	96523	-858	15099	818	3prime_fragment	FALSE	canonical	3	467	junction_5	26.0046149750386	2	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTTCTTTTTTCCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	111889309	111883338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_111884694_111886430_111886538_111887252_111887374_111888057_111888166_111888998_111889101_111889269
52720	chr8	-	1527	8	ISM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	110	116	47	-116	3prime_fragment	FALSE	canonical	3	419	junction_2	37.0090998186629	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTGTTTAAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	108151571	108139236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369
52721	chr1	-	1837	4	Antisense	novelGene_ENSMUSG00000065228.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAAATAAGAGATGTGAA	NA	False	NA	NA	False	NA	NA	NA	160866091	160863552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160864742_160865072_160865608_160865794_160865841_160866024
52722	chr7	+	310	1	NIC	ENSMUSG00000003423.16	novel	1077	10	NA	NA	-16	-2147	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGCGGCCTATGGGCGGA	NA	False	NA	NA	False	NA	NA	NA	44803756	44804066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44803800_44804100
52723	chr3	-	2212	4	FSM	ENSMUSG00000062006.13	ENSMUST00000133802.6	711	4	-12	-1489	0	-4	multi-exon	FALSE	canonical	3	6284	junction_3	1377.49636014845	4	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGATCTACGCTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	130523995	130520491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_130522501_130522699_130522800_130522877_130522952_130523966
52724	chr2	-	3406	4	Antisense	novelGene_ENSMUSG00000086598.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCCTCCCTCCGCGCG	2293	False	NA	NA	False	NA	NA	NA	84499117	84489416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_84489936_84490438_84490524_84491772_84491944_84496486
52725	chr15	+	2175	10	NNC	ENSMUSG00000000532.12	novel	4418	9	NA	NA	63	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5.78204970278119	2	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAACTGCTCTGATCCCG	NA	False	NA	NA	False	NA	NA	NA	101072010	101111557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101072117_101091812_101092053_101092689_101092939_101096664_101096896_101099858_101100027_101100818_101100976_101102333_101102459_101106960_101107092_101108617_101108833_101111004
52726	chr6	+	691	1	Intergenic	novelGene_4260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTTCAAAACCCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	128222140	128222831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_128222100_128222800
52727	chr9	+	1051	7	Intergenic	novelGene_1034	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCCAATTCACAGCTGGAA	NA	False	NA	NA	False	NA	NA	NA	53009934	53135021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53010065_53071211_53071320_53115359_53115829_53118763_53118857_53120989_53121077_53124535_53124634_53134955
52729	chr4	-	1857	7	ISM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	135	1578	135	-1153	5prime_fragment	FALSE	canonical	3	194	junction_3	9.88966913276453	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGGTGCTTGTATATC	NA	False	NA	NA	False	NA	NA	NA	107110594	107092288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
52730	chr15	-	2318	4	NNC	ENSMUSG00000062397.9	novel	4417	4	NA	NA	101	1618	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3122.70683862575	2	142	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACGAAACTAGTCTAATT	256	False	NA	NA	False	NA	NA	NA	37007545	36999253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_37001168_37002082_37002191_37003929_37004067_37007386
52732	chr8	+	1705	6	NIC	ENSMUSG00000019433.10	novel	1522	7	NA	NA	-3	95	intron_retention	FALSE	canonical	3	964	junction_1	105.526489565417	734	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTGCTCTCCCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	84379311	84391418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84379367_84387587_84387910_84388583_84389045_84389677_84389791_84390548_84390631_84390746
52733	chr17	+	4169	1	NIC	ENSMUSG00000024191.16	novel	1098	6	NA	NA	3	-641	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCTGCCTTGAGTGG	2052	False	NA	NA	False	NA	NA	NA	27000097	27004266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_27000100_27004300
52734	chr14	+	2948	13	NNC	ENSMUSG00000022066.17	novel	3589	13	NA	NA	4	465	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	28.7614711414806	89	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAACAGACTTGACATTTT	NA	False	NA	NA	False	NA	NA	NA	69792900	69822380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812825_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
52737	chr4	-	1032	8	FSM	ENSMUSG00000028409.12	ENSMUST00000130503.8	1523	8	25	466	25	-466	multi-exon	FALSE	canonical	3	1190	junction_4	78.848602021953	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGACCAGACAATACGG	-2	True	NA	NA	False	NA	NA	NA	40757858	40744049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
52738	chr13	-	1606	4	FSM	ENSMUSG00000058672.8	ENSMUST00000056427.10	1610	4	0	4	0	-4	multi-exon	FALSE	canonical	3	289	junction_2	19.2006944318862	1156	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATGGTCCTTTTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	34261990	34258260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34259512_34260160_34260272_34260531_34260641_34261855
52739	chr7	+	2375	17	FSM	ENSMUSG00000030471.18	ENSMUST00000118927.8	2410	17	30	5	1	-5	multi-exon	FALSE	canonical	3	240	junction_5	25.4348893009189	337	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGACTTAGTTTCTAAT	NA	False	NA	NA	False	NA	NA	NA	48438780	48477183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
52740	chr1	-	1214	8	NNC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	-15	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	347.61549248019	19	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGAAATTGTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	10108185	10095063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104305_10105175_10105389_10107894
52741	chr8	+	3385	4	FSM	ENSMUSG00000031864.17_ENSMUSG00000081745.2	ENSMUST00000146322.8	1408	4	-1	-1976	-1	1289	multi-exon	FALSE	canonical	3	644	junction_3	36.0030862874591	12	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGACCCATAAATAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	69246606	69253429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410
52742	chr2	-	1459	13	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	0	101	combination_of_known_splicesites	FALSE	canonical	2	12	junction_5	129.679171419315	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTACGCATGGTCCA	NA	False	NA	NA	False	NA	NA	NA	48839246	48795226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
52744	chr2	-	2352	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61373	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_14	11.1785143768512	117	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	93760875	93685706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
52745	chr2	-	2967	21	ISM	ENSMUSG00000027284.17	ENSMUST00000110700.2	5996	28	3146	1669	266	-5	3prime_fragment	TRUE	canonical	3	45	junction_16	13.6359818128362	55	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGTGATGGCTGTTCT	9260	False	NA	NA	False	NA	NA	NA	120558853	120548671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814
52747	chr4	-	1353	1	FSM	ENSMUSG00000047281.4	ENSMUST00000057311.4	1613	1	257	3	257	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	888	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTCTTCTTCAGTTATT	9987	False	NA	NA	False	NA	NA	NA	133329222	133327869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133327900_133329200
52748	chr7	-	2712	3	NNC	ENSMUSG00000030960.17	novel	811	3	NA	NA	1019	1903	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	142	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCATTTCGAAACTATCT	NA	False	NA	NA	False	NA	NA	NA	132453089	132449931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132450038_132450200_132452290_132452572
52749	chr16	-	1599	9	NNC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	-3293	-9	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_5	100.037414875635	437	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTGTAATGAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	18145608	18118699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128820_18130502_18130623_18134509_18134599_18142220_18142315_18145446
52750	chr8	+	3471	3	Antisense	novelGene_ENSMUSG00000031847.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCGCGGCCCCCAAGAGC	NA	False	NA	NA	False	NA	NA	NA	117695807	117705648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_117698894_117700188_117700438_117705512
52751	chr11	-	3014	21	NNC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	-2	525	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	95.6281339355736	2	89	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAACAAGCCACCCCCTAG	NA	False	NA	NA	False	NA	NA	NA	103844852	103713225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804189_103804695_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821632_103844791
52752	chr14	-	2200	13	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-192	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	66.4142617716004	2	89	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAAAACTGTCACAGATGC	NA	False	NA	NA	False	NA	NA	NA	54655429	54606945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616567_54645959_54646506_54649041_54649104_54651336_54651471_54654045_54654116_54655357
52753	chr8	+	1864	4	ISM	ENSMUSG00000089736.3	ENSMUST00000110993.2	1075	7	652	5	-12	-5	intron_retention	FALSE	canonical	3	6	junction_1	3.68178700572909	5	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAACTTCTGGTGGAGTCA	NA	False	NA	NA	False	NA	NA	NA	4298865	4301418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_4299342_4299425_4299747_4300266_4300382_4300466
52755	chr17	-	1382	3	ISM	ENSMUSG00000024007.16	ENSMUST00000135123.3	1476	4	1780	13	1770	-13	3prime_fragment	FALSE	canonical	3	1356	junction_1	154	44	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTGGTTGAAATCACTGT	9155	False	NA	NA	False	NA	NA	NA	29481142	29469818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_29470700_29471223_29471293_29480710
52756	chr6	+	1775	1	NIC	ENSMUSG00000029815.13	novel	2819	4	NA	NA	-1462	-637	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGACGACTGGCTGTGTG	1327	False	NA	NA	False	NA	NA	NA	49058056	49059831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_49058100_49059800
52757	chr6	+	1805	1	NIC	ENSMUSG00000029815.13	novel	2819	4	NA	NA	313	24	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCTTCCCTTTGATATG	569	False	NA	NA	False	NA	NA	NA	49059831	49061636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_49059800_49061600
52758	chrX	-	1305	5	Antisense	novelGene_ENSMUSG00000002014.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGGCACCGGAAGGGGGC	NA	False	NA	NA	False	NA	NA	NA	72834424	72830615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72830911_72832438_72832558_72832658_72832759_72833404_72834029_72834257
52759	chr15	-	1551	1	Intergenic	novelGene_3328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTCTCACAATATAT	NA	False	NA	NA	False	NA	NA	NA	79852779	79851228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_79851200_79852800
52760	chr14	-	1699	13	NNC	ENSMUSG00000021814.18	novel	2851	13	NA	NA	8	361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	354.193793078811	2	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8178	False	NA	NA	False	NA	NA	NA	20530001	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514739_20514904_20514997_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
52761	chr1	+	2270	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	9	18	5	2	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	87	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGGTCTTGGAAGGACAGT	NA	False	NA	NA	False	NA	NA	NA	133291318	133308056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
52762	chr14	-	1724	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	-35	0	-35	0	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	211	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	70879743	70873642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
52763	chr14	-	1814	8	Intergenic	novelGene_651	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTCCTATTTCCACACAG	NA	False	NA	NA	False	NA	NA	NA	122639637	122514934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_122514995_122517492_122518285_122608650_122608841_122613292_122613394_122615193_122615287_122616608_122616780_122621606_122621733_122639356
52764	chr1	+	2635	4	FSM	ENSMUSG00000039384.9	ENSMUST00000048655.8	2792	4	53	104	53	-104	multi-exon	FALSE	canonical	3	8	junction_1	4.08248290463863	68	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAATATTTTTCGCAA	NA	False	NA	NA	False	NA	NA	NA	183766630	183807729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_183766767_183768997_183769850_183801048_183801421_183806454
52765	chr11	+	1150	9	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	932.235812107108	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACACATTGTGTGACTCTG	NA	False	NA	NA	False	NA	NA	NA	9068539	9086163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081750_9083259_9083349_9084721_9084932_9085163_9085311_9085960
52768	chrX	-	2068	1	Genic_Genomic	ENSMUSG00000061273.4	novel	NA	NA	NA	NA	10494	4	mono-exon	FALSE	NA	NA	NA	NA	NA	45	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTTGGTAGTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	55632935	55630867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_55630900_55632900
52770	chr3	-	1963	5	NNC	ENSMUSG00000027944.14	novel	1280	6	NA	NA	32	-17	intron_retention	FALSE	non_canonical	0	0	junction_3	831.391416542172	1	102	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCTTTATTTATGCTAA	7299	False	NA	NA	False	NA	NA	NA	89905895	89902780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903706_89904124_89905311_89905834
52771	chr3	-	1444	7	Antisense	novelGene_ENSMUSG00000090005.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89969754	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960915_89963511_89963632_89963835_89963887_89965856_89965958_89966047_89966108_89968944
52773	chr4	-	3993	6	ISM	ENSMUSG00000028487.19	ENSMUST00000107198.9	3948	7	119162	-137	-9286	3	3prime_fragment	FALSE	canonical	1	4	junction_2	3.26190128606002	19	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAACAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	84474142	84193328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_84194685_84209929_84211900_84309125_84309362_84332482_84332586_84464441_84464643_84474015
52774	chr6	+	2212	7	NNC	ENSMUSG00000007458.15	novel	2515	7	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	491.748044112927	1	140	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGGCTTTGTCGTTTGTG	2954	False	NA	NA	False	NA	NA	NA	122285968	122294637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122286119_122289196_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
52775	chr2	+	1699	9	FSM	ENSMUSG00000017721.16	ENSMUST00000117066.8	1712	9	-21	34	-6	-34	multi-exon	FALSE	canonical	3	60	junction_7	35.1212186576719	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAGATTAAAGAAGTTGAC	5106	False	NA	NA	False	NA	NA	NA	164339433	164345006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397
52776	chr6	-	2396	8	ISM	ENSMUSG00000008153.13	ENSMUST00000112523.8	3703	18	12569	12	-3	-12	3prime_fragment	FALSE	canonical	3	22	junction_7	10.5211157940126	100	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTAGAAAAAAGTTCTTGC	9250	False	NA	NA	False	NA	NA	NA	124427134	124407729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448_124426598_124426732
52781	chr9	-	1219	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGGCTGCTCCCACAGGA	NA	False	NA	NA	False	NA	NA	NA	64085804	64080680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080710_64082100_64082280_64082481_64082581_64082863_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085002_64085065_64085507
52782	chr1	-	2052	6	ISM	ENSMUSG00000034212.15	ENSMUST00000160548.8	3246	18	3230	14253	3230	-14253	internal_fragment	FALSE	canonical	0	0	junction_4	3.32264954516723	6	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCCTTCCCGAGTTGC	NA	False	NA	NA	False	NA	NA	NA	92827398	92812103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_92812988_92813857_92814017_92814344_92814562_92816168_92816639_92823790_92823935_92827220
52783	chr8	+	2407	8	FSM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	20	460	20	-100	multi-exon	FALSE	canonical	3	59	junction_1	11.7334338276463	185	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCTGCTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	73197743	73214385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
52784	chr12	-	2395	4	Antisense	novelGene_ENSMUSG00000021177.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	60	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGACACCAGCCGAGACC	8222	False	NA	NA	False	NA	NA	NA	99866524	99857711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_99858004_99859875_99859919_99860966_99861020_99864517
52786	chr3	+	2163	9	NIC	ENSMUSG00000028199.19	novel	2505	9	NA	NA	58	-16	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	57.5769865050265	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTGTAGAACACTGAAGC	NA	False	NA	NA	False	NA	NA	NA	154302916	154328801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_154303165_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
52787	chr14	-	1728	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	3	-1	3	1	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	71	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGGAAAGACAATTTTCT	2345	False	NA	NA	False	NA	NA	NA	55897905	55895349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
52789	chr15	-	1704	2	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	23538	-992	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGCGCAGCCCTTTGT	7912	False	NA	NA	False	NA	NA	NA	98637335	98635506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98636137_98636261
52790	chr10	-	1842	5	FSM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	27	11	14	-11	multi-exon	FALSE	canonical	3	19	junction_4	2.34520787991171	145	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGAGTAATGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	75617221	75609959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75610845_75611704_75611882_75612577_75612729_75613934_75614023_75616680
52791	chr7	+	2048	2	Antisense	novelGene_ENSMUSG00000030738.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATGAACTTCTTTTAATG	NA	False	NA	NA	False	NA	NA	NA	126148571	126151070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126150346_126150796
52792	chr7	-	3350	12	NNC	ENSMUSG00000044465.20	novel	10853	12	NA	NA	2	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	132.133040893895	2	169	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAGAACTTGTTGCAATA	NA	False	NA	NA	False	NA	NA	NA	105049207	105027857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034205_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039562_105049090
52793	chr10	-	2339	4	FSM	ENSMUSG00000049858.9	ENSMUST00000054764.9	2497	4	158	0	158	0	multi-exon	FALSE	canonical	3	11	junction_3	1.88561808316413	38	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGAATCTCTTGGGCC	8750	False	NA	NA	False	NA	NA	NA	128509784	128505762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128507796_128507972_128508151_128508407_128508472_128509720
52794	chr1	+	3455	7	Antisense	novelGene_ENSMUSG00000040225.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCAAGATGGCGGCTAG	NA	False	NA	NA	False	NA	NA	NA	162543235	162568083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162543289_162543847_162546480_162548049_162548175_162548997_162549109_162550678_162550857_162552272_162552439_162567893
52795	chr7	-	1955	6	Genic_Genomic	ENSMUSG00000109115.2	novel	1969	1	NA	NA	1420	31853	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGCATTTTTCCATAAAG	8905	False	NA	NA	False	NA	NA	NA	67329631	67297229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_67297592_67312072_67312273_67316908_67317033_67319443_67319597_67319799_67319926_67328641
52798	chr2	+	3450	4	ISM	ENSMUSG00000026743.17	ENSMUST00000153279.2	651	6	-227	24429	-29	20207	5prime_fragment	FALSE	canonical	3	26	junction_3	72.0061725749181	6	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTTATTATTAATTTAT	4613	False	NA	NA	False	NA	NA	NA	18069417	18090273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18087321
52800	chrX	-	2689	12	FSM	ENSMUSG00000000402.3	ENSMUST00000000412.3	2704	12	16	-1	16	1	multi-exon	FALSE	canonical	2	11	junction_6	3.09892009982897	42	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTTGAAACACTTTGTC	NA	False	NA	NA	False	NA	NA	NA	165368700	165306001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_165306968_165310309_165310576_165314967_165315070_165319195_165319277_165321409_165321731_165329416_165329540_165331818_165331954_165335420_165335541_165339965_165340086_165345937_165346031_165351404_165351518_165368451
52801	chr7	+	2040	16	NNC	ENSMUSG00000030589.16	novel	2296	17	NA	NA	2549	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	15.5905954558082	128	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGCCAGTCACACTCC	402	False	NA	NA	False	NA	NA	NA	28837046	28851046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28837151_28838235_28838341_28838463_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848557_28849223_28849261_28849346_28849482_28849603_28849717_28850870
52803	chrX	-	2366	10	NNC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	63	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	117.854901373586	5	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGCGTTTATTTATTC	NA	False	NA	NA	False	NA	NA	NA	36373912	36355333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363341_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373638
52804	chr7	+	1025	9	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	877.287857191127	40	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8544	False	NA	NA	False	NA	NA	NA	27869147	27878694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27869244_27873928_27874025_27874281_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
52806	chrX	+	1129	5	ISM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	611	126	547	-126	3prime_fragment	FALSE	canonical	3	351	junction_4	22.0496598613221	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGTGGGTATCCGCTG	NA	False	NA	NA	False	NA	NA	NA	99538507	99559605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
52807	chr9	+	1652	8	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-366	-1836	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	92.9191002091253	14	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAATA	NA	False	NA	NA	False	NA	NA	NA	110789535	110811298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110789646_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
52809	chr5	+	2757	5	FSM	ENSMUSG00000070420.5	ENSMUST00000094116.5	1796	5	-6	-955	-6	955	multi-exon	FALSE	canonical	3	40	junction_1	6.87386354243376	50	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAATTAGTAACTTTCC	5619	False	NA	NA	False	NA	NA	NA	145220155	145229043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145220591_145223117_145223320_145224117_145224210_145225103_145225228_145227139
52811	chr1	-	1909	14	NIC	ENSMUSG00000057363.13	novel	4620	15	NA	NA	3	-20	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	55.5838297545025	11	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACATGGGTTTTGAGCT	NA	False	NA	NA	False	NA	NA	NA	43866919	43788691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_43789523_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
52812	chr1	+	1331	10	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	221.393956445557	11	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTCGCCCTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	42890427	42944839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_42890587_42901628_42901809_42918914_42918978_42926884_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
52813	chr5	+	2678	5	NIC	ENSMUSG00000029464.11	novel	1592	8	NA	NA	98	0	intron_retention	FALSE	canonical	3	500	junction_4	5.53962995154008	2	152	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8213	False	NA	NA	False	NA	NA	NA	122510687	122520965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122519558_122520110
52816	chr1	+	2437	19	NNC	ENSMUSG00000026083.13	novel	7797	24	NA	NA	21350	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	206.042673573542	4	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAGTATTTGATTAACC	9306	False	NA	130	True	NA	NA	NA	38058559	38091084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072243_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088370_38090981
52817	chr11	-	2891	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	140	-2212	140	2212	multi-exon	FALSE	canonical	3	61	junction_1	0	515	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGAATAAACTGCTTTG	6959	False	NA	NA	False	NA	NA	NA	88857603	88853271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88856100_88857540
52818	chr8	-	1582	18	NNC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	179.653222283422	1	56	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3362	False	NA	NA	False	NA	NA	NA	105261240	105237659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_105237868_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
52820	chr14	+	3104	1	ISM	ENSMUSG00000053205.10	ENSMUST00000226873.2	12974	11	28675	2636	8261	-2636	mono-exon	FALSE	NA	NA	NA	NA	NA	36	76	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAACCTTAAAATTCAATA	NA	False	NA	NA	False	NA	NA	NA	45617224	45620328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_45617200_45620300
52822	chr1	+	1103	1	Genic_Genomic	ENSMUSG00000025907.15	novel	NA	NA	NA	NA	666	605	mono-exon	FALSE	NA	NA	NA	NA	NA	25	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACACTTCAAATAATAT	NA	False	NA	NA	False	NA	NA	NA	6320984	6322087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_6321000_6322100
52823	chr2	-	1795	14	NNC	ENSMUSG00000089917.8	novel	1849	15	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	30.2142252636738	286	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	4541	False	NA	87	True	NA	NA	NA	181223807	181210941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212349_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
52824	chr7	+	1465	13	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	43	-202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	479.04963788271	1	64	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAGGAAAACAATAATA	NA	False	NA	NA	False	NA	NA	NA	120234528	120258545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239547_120242313_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258245
52825	chr7	-	2181	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	-4	0	-4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	496	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTAATGTTTGGTT	2837	False	NA	NA	False	NA	NA	NA	126873231	126871050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126871000_126873200
52826	chr16	+	1313	2	Antisense	novelGene_ENSMUSG00000097318.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	121	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCAAGCGAGGGCCGGCGG	NA	False	NA	NA	False	NA	NA	NA	33199620	33201069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_33200754_33200889
52827	chr3	+	2444	2	FSM	ENSMUSG00000105265.6	ENSMUST00000198758.2	1286	2	683	-1841	683	-6	multi-exon	FALSE	canonical	2	2	junction_1	0	16	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTGTATTCTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	34710867	34732136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34710993_34729817
52829	chr2	-	2492	3	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	17650	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	215	4	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGAGCTTTATAGGAAT	NA	False	NA	NA	False	NA	NA	NA	165676392	165669067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228
52830	chr17	-	2049	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	-39	0	intron_retention	FALSE	canonical	3	88	junction_4	22.0056810846654	180	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	36290379	36283432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018
52831	chr11	-	1698	14	NNC	ENSMUSG00000054079.13	novel	2613	14	NA	NA	696	-710	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_13	230.845756542349	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAGTGTACATGATTTT	NA	False	NA	NA	False	NA	NA	NA	93775896	93750778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93775668
52832	chr4	-	1058	3	Antisense	novelGene_ENSMUSG00000038607.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	896	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGTTCGGCTGGGAGGA	NA	False	NA	NA	False	NA	NA	NA	59041900	59035218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_59035317_59039224_59039356_59041071
52833	chrX	+	1940	10	NIC	ENSMUSG00000009995.18	novel	1851	10	NA	NA	-36	1	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	89.2238134630486	256	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTGTCTTCTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	73325481	73333755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73325647_73326323_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332710_73332789_73332904
52834	chr7	-	1643	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	141	0	-32	0	multi-exon	FALSE	canonical	3	640	junction_5	133.345925331332	505	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3752	False	NA	NA	False	NA	NA	NA	30349601	30340425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
52835	chr6	-	2264	2	FSM	ENSMUSG00000029844.10	ENSMUST00000000964.6	2251	2	-16	3	-16	2	multi-exon	FALSE	canonical	3	16	junction_1	0	83	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGCCTAAGCATCTTGT	NA	False	NA	NA	False	NA	NA	NA	52135313	52132572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_52134070_52134546
52836	chr15	-	2279	6	ISM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	18598	16	-614	-16	3prime_fragment	FALSE	canonical	3	59	junction_5	11.0742945599257	9	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTTACTACTAAAGGTT	NA	False	NA	NA	False	NA	NA	NA	79470711	79445713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869
52837	chr7	+	1519	1	Antisense	novelGene_ENSMUSG00000063047.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAGTATAATCCCAAGCAT	4697	False	NA	NA	False	NA	NA	NA	27658697	27660216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_27658700_27660200
52839	chr10	-	2225	3	NNC	ENSMUSG00000112261.2	novel	660	3	NA	NA	26	1622	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	7.5	58	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCACTGGGGGTGCATA	1579	False	NA	NA	False	NA	NA	NA	95297060	95279555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95281620_95296475_95296557_95296980
52840	chr15	+	1785	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	15	3	15	0	multi-exon	FALSE	canonical	3	24	junction_3	7.71722460186015	194	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGAAGCCTGTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	75840986	75847595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_75841254_75844930_75845058_75845390_75845505_75846318
52841	chr2	+	1655	10	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	93.1034205256727	1	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTGTTTTGGTGTGTTA	80	False	NA	NA	False	NA	NA	NA	13579121	13587632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283_13587405_13587578
52842	chr9	+	3892	13	FSM	ENSMUSG00000034858.17	ENSMUST00000170846.8	4355	13	80	383	61	0	multi-exon	FALSE	canonical	2	6	junction_4	2.59673940848048	21	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTGGTGTGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	74860414	74939367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_74860561_74860995_74861113_74911546_74911732_74913569_74913773_74914243_74914370_74915932_74917749_74920222_74920337_74923125_74923206_74924319_74924429_74926278_74926438_74930866_74930936_74932932_74933130_74938796
52843	chr17	-	1232	10	NIC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	-7	-87	intron_retention	FALSE	canonical	3	143	junction_5	13.752665286014	12	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTCCATGACTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	25459105	25453377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25453697_25453781_25453864_25453953_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
52844	chr1	+	3102	16	NNC	ENSMUSG00000058729.14	novel	3160	15	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	32.1742478112888	2	129	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	NA	False	NA	NA	NA	180468915	180518252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180468963_180469414_180469558_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
52846	chr1	-	2211	8	ISM	ENSMUSG00000067653.13	ENSMUST00000054665.10	1964	9	1336	-339	1336	-7	3prime_fragment	FALSE	canonical	3	38	junction_4	9.04636582799289	8	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTCAGCCTGGTTGCCTC	NA	False	NA	NA	False	NA	NA	NA	36573484	36569275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_36570723_36570803_36570903_36570989_36571089_36571192_36571292_36571382_36571482_36571661_36571788_36573067_36573197_36573371
52847	chr9	+	528	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	640	-316	640	316	mono-exon	FALSE	NA	NA	NA	NA	NA	96	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACTTGGAAAAGGACA	NA	False	NA	NA	False	NA	NA	NA	16941980	16942508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_16942000_16942500
52849	chr9	-	2095	2	NIC	ENSMUSG00000032298.14	novel	1601	10	NA	NA	-7	-1758	intron_retention	FALSE	canonical	3	40	junction_1	0	3	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGGCTGAAGATCCCTCC	NA	False	NA	NA	False	NA	NA	NA	57055418	57052297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57054342_57055367
52850	chr11	-	1868	2	Antisense	novelGene_ENSMUSG00000065094.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGGAAAGGACGAGATCGCG	NA	False	NA	NA	False	NA	NA	NA	116565566	116562502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_116563562_116564757
52851	chr14	-	1166	7	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1220.96901407584	2	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733448_63737594_63737770_63746158
52852	chr8	-	2439	5	ISM	ENSMUSG00000035671.7	ENSMUST00000039480.7	4625	14	13640	286	13640	-286	3prime_fragment	FALSE	canonical	3	31	junction_1	1.22474487139159	58	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACTTCTTTTTAACTTC	NA	False	NA	NA	False	NA	NA	NA	84950044	84937592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_84939435_84940651_84940734_84943873_84944038_84946454_84946610_84949848
52853	chr3	-	1069	7	NNC	ENSMUSG00000000563.18	novel	1604	8	NA	NA	-9	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1738.84055399632	2	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTCATACTCTGAAATAG	NA	False	NA	NA	False	NA	NA	NA	105866571	105850007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_105850367_105851053_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
52854	chrX	+	3151	17	NNC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	767	-428	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	60.7579405818696	3	71	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTAAAGAGTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	18029653	18145747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18120765_18144864
52855	chrX	+	1441	1	Antisense	novelGene_ENSMUSG00000025266.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTCCAGGACAGCCAAGA	NA	False	NA	NA	False	NA	NA	NA	149766136	149767577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_149766100_149767600
52856	chr17	+	400	1	ISM	ENSMUSG00000038677.15	ENSMUST00000043503.11	6876	22	31005	1309	7337	518	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCACTAGACTTAGCTGA	NA	False	NA	NA	False	NA	NA	NA	28392119	28392519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_28392100_28392500
52857	chr17	+	1293	1	ISM	ENSMUSG00000038677.15	ENSMUST00000043503.11	6876	22	31405	16	7737	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	15	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAATGAAACTCCGAGGTC	NA	False	NA	NA	False	NA	NA	NA	28392519	28393812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_28392500_28393800
52858	chr7	+	1716	3	NIC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	-14	-3	intron_retention	FALSE	canonical	3	19383	junction_2	749	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTGTTTTTGTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	28050173	28052118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28050277_28050416_28051699_28051787
52859	chr8	+	1960	9	NIC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	88	-15	intron_retention	FALSE	canonical	3	1283	junction_8	36.3180395946698	53	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTATCCATTATCGCTCT	540	False	NA	NA	False	NA	NA	NA	70755255	70765625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70757347_70758284_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
52861	chr10	-	2165	13	NIC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	-2	-6	intron_retention	FALSE	canonical	3	14	junction_1	63.0349880798134	59	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCGGGGTGTCTCATG	NA	False	NA	NA	False	NA	NA	NA	79390950	79376085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79377034_79378238_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385514_79386149_79386241_79390907
52862	chr5	+	1470	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	13	1513	9	-27	multi-exon	FALSE	canonical	3	30	junction_1	106.686643962588	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTTTCTTAAAAAGATT	6942	False	NA	NA	False	NA	NA	NA	65548895	65566523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
52863	chr11	+	1953	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	21	5	-1	0	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	171	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTGGTTCAATACTTAC	5953	False	NA	NA	False	NA	NA	NA	115705570	115713915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
52864	chr7	+	3617	17	NNC	ENSMUSG00000053046.17	novel	2575	20	NA	NA	24	1	intron_retention	FALSE	canonical	0	0	junction_7	2.85523094512511	6	98	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGACGCAAGGTTTCCGTC	NA	False	NA	NA	False	NA	NA	NA	141535297	141557985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141535369_141536717_141536808_141538130_141538272_141538585_141538703_141539170_141539205_141539446_141539516_141539622_141539770_141541440_141541653_141541850_141541949_141542022_141542174_141545976_141546038_141546848_141547057_141547451_141547501_141550625_141550750_141552114_141552296_141552369_141552460_141556211
52867	chr2	+	2104	10	NNC	ENSMUSG00000014959.13	novel	2238	10	NA	NA	52	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	214.385829640434	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGTGTTCTAAGTGG	NA	False	NA	NA	False	NA	NA	NA	70491985	70522067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519599_70521001
52868	chr5	+	1448	3	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	14278	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304	1	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGGTCTTTTCTATGAA	20	True	NA	NA	False	NA	NA	NA	143403870	143407659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143403962_143405194_143405448_143406555
52874	chr13	-	970	7	NNC	ENSMUSG00000061474.12	novel	469	5	NA	NA	-417	4	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	555.325430115832	36	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGTGGTCACTTGTAT	NA	False	NA	NA	False	NA	NA	NA	100881584	100872632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100880076_100880146_100880296_100880333_100881037_100881156_100881238
52875	chr10	-	1231	8	NNC	ENSMUSG00000061904.13	novel	1395	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1672.86466998429	8	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959829	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953083_90953186_90953921_90954079_90954560_90954743_90955388_90955557_90957787_90957908_90959452_90959569_90959777
52876	chr8	-	3389	10	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	8	-8	intron_retention	FALSE	canonical	3	61	junction_9	40.0484274748694	14	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTAAGCTGTATATGTG	NA	False	NA	NA	False	NA	NA	NA	57003870	56984564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003722
52877	chr4	-	1251	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3612.9610898451	15	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAATAATAATGTCTAGT	NA	False	NA	NA	False	NA	NA	NA	119151682	119135189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119150982_119151625
52878	chrX	+	2750	1	Antisense	novelGene_ENSMUSG00000031325.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGGTAGATTGCAGCGCA	NA	False	NA	NA	False	NA	NA	NA	102352651	102355401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_102352700_102355400
52879	chr4	+	1293	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	37	6	37	-6	multi-exon	FALSE	canonical	3	345	junction_3	21.2882009573378	1099	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAATCCTGTCCTGTTTT	7662	False	NA	NA	False	NA	NA	NA	126156154	126169670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
52880	chr1	+	505	1	Intergenic	novelGene_379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGGATAACCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	63213769	63214274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_63213800_63214300
52881	chr7	-	1060	6	ISM	ENSMUSG00000003435.10	ENSMUST00000207879.2	3096	22	12347	0	1954	0	3prime_fragment	FALSE	canonical	3	702	junction_4	102.317153987003	18	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	28016263	28014318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208
52883	chr19	+	2169	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	8	-1	8	1	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	410	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTAGACCAATCATTTA	9079	False	NA	NA	False	NA	NA	NA	46678352	46691822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
52884	chr6	+	888	1	ISM	ENSMUSG00000030116.15	ENSMUST00000126357.2	2491	4	344	4905	344	-4608	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCCCTCCTATTCTTTAC	8075	False	NA	NA	False	NA	NA	NA	122499801	122500689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122499800_122500700
52885	chr4	-	2253	2	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	141	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGAGTTCCTTACCACG	NA	False	NA	NA	False	NA	NA	NA	145178185	145159047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159149_145176033
52886	chr6	+	3787	11	NIC	ENSMUSG00000029863.14	novel	1439	12	NA	NA	3	-10	intron_retention	FALSE	canonical	3	6	junction_5	43.5096541011302	1	174	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTACTGATTTTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	42241921	42259432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_42242132_42244432_42244584_42244827_42244996_42245140_42245223_42245819_42245915_42246155_42246391_42250850_42250980_42253628_42253720_42253803_42253865_42256710_42256861_42257017
52887	chr13	+	2316	16	NIC	ENSMUSG00000057649.7	novel	1111	11	NA	NA	-9	2	combination_of_known_junctions	FALSE	canonical	2	15	junction_1	41.4208750377016	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGTACCTGTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	74086261	74108938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_74086355_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
52888	chr11	-	3209	19	FSM	ENSMUSG00000034586.15	ENSMUST00000044152.13	3236	19	22	5	22	-5	multi-exon	FALSE	canonical	2	4	junction_16	3.67045259092421	18	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCTGTTGTGTCTCTG	8719	False	NA	NA	False	NA	NA	NA	115258523	115238537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250635_115251147_115251319_115252464_115252615_115258369
52889	chr10	+	1804	5	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-841	617	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	55.5720253364946	1	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAGAAACTCAGAATATCA	NA	False	NA	NA	False	NA	NA	NA	95728463	95733736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95728602_95729113_95729296_95729415_95729523_95729937_95730152_95732573
52890	chr1	+	1181	6	NNC	ENSMUSG00000025903.15	novel	529	7	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	333.847869545396	58	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGATTGCTTTATATAGTAC	NA	False	NA	NA	False	NA	NA	NA	4878115	4916958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902586_4916065
52891	chr2	-	2246	20	Intergenic	novelGene_2589	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGAGCGCCGCCCACCCAG	NA	False	NA	NA	False	NA	NA	NA	28821897	28730626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_28730871_28734847_28735104_28735206_28735286_28736005_28736046_28737448_28737522_28738295_28738361_28744780_28744826_28746204_28746247_28747129_28747195_28748745_28748865_28748996_28749104_28749877_28750088_28750725_28750903_28753725_28753787_28764141_28764189_28765696_28765840_28771152_28771231_28776894_28777013_28782388_28782553_28821784
52892	chr11	+	1633	13	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	-4	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.209723473606	1	38	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGGGTGCGGGGAA	NA	False	NA	NA	False	NA	NA	NA	60345445	60359539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60345534_60347384_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352390_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
52894	chr7	-	1405	2	FSM	ENSMUSG00000045251.14	ENSMUST00000135886.2	2732	2	1326	1	1108	-1	multi-exon	FALSE	canonical	3	55	junction_1	0	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAGTGTTTTGTGTTA	-14	True	NA	NA	False	NA	NA	NA	127019914	127018141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127018814_127019181
52895	chrX	+	1184	6	NNC	ENSMUSG00000001964.15	novel	1595	6	NA	NA	0	-162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	112.458703531563	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAAACATGTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	73298421	73301331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73298640_73298813_73298922_73299058_73299116_73299447_73299483_73300483_73300531_73300612
52896	chr18	-	2130	5	FSM	ENSMUSG00000042834.16	ENSMUST00000237066.2	843	5	130	-1417	15	0	multi-exon	FALSE	canonical	0	0	junction_4	20.2854627751008	105	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGCTTTGGCTCATT	NA	False	NA	NA	False	NA	NA	NA	33596777	33570074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596652
52897	chr10	+	1638	1	Antisense	novelGene_ENSMUSG00000020075.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	64	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCCAGAGACTGAGGCAT	NA	False	NA	NA	False	NA	NA	NA	62416053	62417691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62416100_62417700
52898	chr2	+	1624	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	139	1185	116	-1185	multi-exon	FALSE	canonical	3	712	junction_2	38.5	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAAGCTCTGGCCTCAGT	9035	False	NA	NA	False	NA	NA	NA	181506268	181511438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181506363_181507738_181507827_181509996
52900	chr1	-	1003	5	NNC	ENSMUSG00000026202.14	novel	2840	4	NA	NA	-10	77	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.340898270459	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCTTGAGCCTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	75195897	75192178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75192362_75192850_75193238_75193470_75193620_75193855_75194079_75195836
52901	chr2	+	1441	6	ISM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	20	6	0	0	intron_retention	FALSE	canonical	3	333	junction_2	37.3363094051889	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGTTGGAAATTTTCT	4613	False	NA	NA	False	NA	NA	NA	102904039	102922983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093
52903	chrX	+	2174	12	Antisense	novelGene_ENSMUSG00000031358.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	47	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACCAGGAAATACTACT	NA	False	NA	NA	False	NA	NA	NA	167437123	167455342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_167437984_167440007_167440044_167441610_167441709_167445424_167445537_167447038_167447301_167449937_167450098_167451626_167451788_167452485_167452611_167453215_167453305_167454138_167454239_167454789_167454877_167455258
52904	chr3	+	3026	11	NNC	ENSMUSG00000038712.17	novel	2827	10	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.7498589340445	1	149	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTGCGTTCCTACCTTG	NA	False	NA	NA	False	NA	NA	NA	95190229	95203474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95190937_95194006_95194188_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200939_95201079_95202105_95202298_95202583_95202737_95202961
52907	chr15	-	1732	6	NNC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-38	-53	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1613.93749569183	1	95	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACACATGTATTAAAGT	720	False	NA	NA	False	NA	NA	NA	36793801	36772000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775716_36775824_36776489_36776614_36790927_36791233_36793722
52908	chr2	-	999	9	NNC	ENSMUSG00000025781.15	novel	1735	10	NA	NA	10131	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1520.91439909516	4	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	5954	False	NA	NA	False	NA	NA	NA	10074539	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060968_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503
52910	chr11	-	2086	16	NIC	ENSMUSG00000009073.17	novel	2470	17	NA	NA	46	-215	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	118.316787575653	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTAGCTTCTTGTCTTTTG	9062	False	NA	NA	False	NA	NA	NA	4799319	4722548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_4722639_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4770367_4770494_4798871
52911	chr12	-	1375	2	NIC	ENSMUSG00000050545.11	novel	386	3	NA	NA	25	-4	intron_retention	FALSE	canonical	3	6	junction_1	0	10	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTAGTTCAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	4794532	4789895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_4791208_4794469
52912	chr12	-	2707	12	NNC	ENSMUSG00000020628.17	novel	3230	12	NA	NA	1	-400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	56.4024792843496	1	95	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTATAGGCCTAAACAATCA	8237	False	NA	NA	False	NA	NA	NA	28800464	28741027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753533_28753598_28761870_28761984_28771048_28771153_28772400_28772476_28787731_28787849_28796297_28797536_28800359
52914	chr15	-	1146	7	NIC	ENSMUSG00000023755.11	novel	1261	8	NA	NA	67	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	74.1117774416155	437	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	NA	False	NA	NA	NA	98779294	98775658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98776179_98776333_98776416_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
52915	chr18	-	3203	5	FSM	ENSMUSG00000050945.9	ENSMUST00000063989.7	3211	5	1	7	1	-7	multi-exon	FALSE	canonical	3	10	junction_4	5.40832691319598	39	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACACAATTTTTGTTGTT	363	False	NA	NA	False	NA	NA	NA	5334438	5210035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334345
52917	chr1	+	1667	7	NNC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	2	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	80.161815515036	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAGGACTTTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	171097899	171104447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101663_171103814
52918	chr14	-	1973	10	NNC	ENSMUSG00000021938.13	novel	4114	9	NA	NA	-47	1537	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	112.283481629818	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATGTTTGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	57015431	56959905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247_57015280_57015339
52919	chr6	+	2374	7	NNC	ENSMUSG00000042097.18	novel	915	6	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	11.5144836329439	2	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGACCGTCCAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	117840058	117849721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117840104_117843355_117843536_117846178_117846235_117846362_117846438_117847216_117847613_117847772_117848678_117849004
52920	SIRV7	-	942	5	NIC	SIRV7A	novel	949	5	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	1984.06911421956	73	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV7_-_56098_70883_70988_78841_78964_114686_114989_147608
52921	chr4	+	1194	8	NIC	ENSMUSG00000006392.17	novel	1743	8	NA	NA	0	-7	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	294.193050598426	1045	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTCAACCCTGCCATTC	NA	False	NA	NA	False	NA	NA	NA	118266552	118272299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118266584_118268081_118268201_118268722_118268771_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
52922	chr15	+	1297	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	-251	-3	-251	0	multi-exon	TRUE	canonical	1	74	junction_2	101.489839392917	1076	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	76832454	76834932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
52923	chr11	+	4925	6	NNC	ENSMUSG00000061469.4	novel	1462	6	NA	NA	110	3709	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7.07106781186548	22	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTCTCCCAGTACTCT	NA	False	NA	NA	False	NA	NA	NA	51111409	51129589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_51111470_51122618_51122914_51123369_51123435_51124291_51124380_51124877_51125184_51125478
52924	chr3	+	1036	6	NIC	ENSMUSG00000005687.15	novel	1405	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_4	1844.52569513141	10	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTTTATGTGTGGCTAT	5023	False	NA	NA	False	NA	NA	NA	103079064	103086141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103084654_103084736_103085670
52926	chr9	-	4261	9	NIC	ENSMUSG00000074500.12	novel	1701	8	NA	NA	153	1965	intron_retention	FALSE	canonical	0	0	junction_3	1.80277563773199	10	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTCATAATAAAGTACT	1459	False	NA	NA	False	NA	NA	NA	18384565	18364905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_18368349_18368796_18368892_18370952_18371049_18372635_18372700_18379215_18379343_18379909_18379999_18380574_18380693_18384181_18384291_18384445
52927	chr12	+	1447	12	NNC	ENSMUSG00000059669.9	novel	1840	14	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	75.9471325472447	7	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTGGAAACTTGCATTCA	NA	False	NA	NA	False	NA	NA	NA	24548624	24608541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24548649_24550434_24550534_24554945_24554984_24566960_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
52928	chr5	-	1470	10	Antisense	novelGene_ENSMUSG00000106291.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	8	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAAAAGGGTTCAGTACA	NA	False	NA	NA	False	NA	NA	NA	65566523	65549561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_65549731_65551281_65551377_65552705_65552788_65554944_65555102_65555172_65555230_65557187_65557323_65559955_65560098_65561508_65561576_65562666_65562790_65566080
52930	chrX	-	892	7	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6005.39401057268	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232930	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230158_101230956_101231059_101231427_101231609_101231899_101231978_101232903
52934	chr9	-	1279	4	FSM	ENSMUSG00000074476.7	ENSMUST00000216057.2	627	4	0	-652	0	-10	multi-exon	FALSE	canonical	3	69	junction_1	994.029174622154	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTCTTTTTAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	21671599	21666747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21667592_21668585_21668691_21668980_21669126_21671414
52935	chr6	-	2664	12	FSM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	130	1	7	-1	multi-exon	FALSE	canonical	3	32	junction_11	8.77449346328266	146	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTGGCTGAACTAAGGA	9996	False	NA	NA	False	NA	NA	NA	124746506	124737018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
52936	chr17	-	1353	1	ISM	ENSMUSG00000023951.19	ENSMUST00000024747.14	2765	6	13470	0	3027	0	mono-exon	FALSE	NA	NA	NA	NA	NA	186	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCCCTGGTCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	46329271	46327918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_46327900_46329300
52937	chrX	+	1384	11	Antisense	novelGene_ENSMUSG00000031387.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3000	20	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCACCTGATCCTCTTC	7894	False	NA	NA	False	NA	NA	NA	72965726	72974418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72965872_72965958_72966045_72969821_72969954_72971418_72971594_72971883_72971967_72972721_72972949_72973288_72973463_72973612_72973689_72973794_72973871_72974014_72974126_72974319
52938	chr4	-	3624	15	NIC	ENSMUSG00000029032.13	novel	2860	15	NA	NA	12	-52	intron_retention	FALSE	canonical	2	9	junction_14	8.56577194300618	21	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTAAAATTTTGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	154384337	154362994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154372471_154375392_154376011_154377288_154377400_154384281
52940	chr17	-	1497	9	Antisense	novelGene_ENSMUSG00000002279.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	65	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCCGGTCACCGATGAGG	NA	False	NA	NA	False	NA	NA	NA	25881697	25804573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_25804830_25831261_25831418_25850707_25850773_25864120_25864289_25873391_25873579_25874059_25874214_25874356_25874535_25874963_25875084_25881484
52941	chr19	+	2063	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	-10	254	5	-254	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTATGTCTACTCACATT	NA	False	NA	NA	False	NA	NA	NA	60800038	60824411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
52942	chr12	+	2270	14	FSM	ENSMUSG00000021013.17	ENSMUST00000085109.10	2272	14	0	2	0	-2	multi-exon	FALSE	canonical	3	15	junction_7	3.54347470962493	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAAACACTTTTCACTTTT	NA	False	NA	NA	False	NA	NA	NA	98886832	98949489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_98887043_98908476_98908598_98909561_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942411_98942685_98942809_98946060_98946145_98948716
52944	chr4	-	2108	5	NNC	ENSMUSG00000028619.16	novel	6431	5	NA	NA	5	452	intron_retention	FALSE	canonical	3	13	junction_3	25.791229129299	16	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGGCATAGTTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	107035400	106996014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_106996997_107004711_107004906_107022744_107022887_107033670_107033822_107034761
52945	chr4	+	2091	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	-3	194	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	42.5606593255112	2	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAACTTCAAACTTGCAC	NA	False	NA	NA	False	NA	NA	NA	115696414	115736055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115696439_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
52946	chr7	-	1186	2	Genic_Genomic	ENSMUSG00000107383.2	novel	1342	1	NA	NA	-2	73	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CATTGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116425088	116423671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_116424145_116424375
52949	chr2	-	1995	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-26	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.002155167409	1	106	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACATCCTTGGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	152185978	152179345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180601_152181634_152181928_152184956_152185111_152185156_152185248_152185776
52950	chr6	-	1493	8	NNC	ENSMUSG00000004266.16	novel	2226	16	NA	NA	-98	361	intron_retention	FALSE	canonical	0	0	junction_3	54.344704790582	2	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGGGCAAAGCCCCAACT	8822	False	NA	NA	False	NA	NA	NA	124715775	124704348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124704498_124704678_124704759_124705074_124705170_124705299_124705414_124705510_124705934_124709262_124709458_124709700_124709824_124715461
52951	chr11	+	2108	1	Antisense	novelGene_ENSMUSG00000013415.10_AS_novelGene_ENSMUSG00000093358.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	52	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATCTTAAAAAAAAAAGAAAG	9712	False	NA	NA	False	NA	NA	NA	95853582	95855690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_95853600_95855700
52952	chrX	+	3539	4	NNC	ENSMUSG00000067860.12	novel	2980	4	NA	NA	-132	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	96.2439031258027	1	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTTATAACTTTTTTT	9724	False	NA	NA	False	NA	NA	NA	57076226	57081918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_57077153_57077337_57077598_57078721_57078886_57079729
52954	ERCC-00145	+	1021	1	FSM	ERCC-00145A	DQ875386	1024	1	3	0	3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	3	1024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00145_+_0_1000
52955	chr12	-	154	1	FSM	ENSMUSG00000118841.1	ENSMUST00000174924.4	300	1	27	119	27	-119	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCGGCCCAGGTCGGAAA	NA	False	NA	NA	False	NA	NA	NA	69408228	69408074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69408100_69408200
52956	chr6	-	1687	9	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	11	128	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	1511.07503122777	1	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTGTAACATGAATTT	NA	False	NA	NA	False	NA	NA	NA	39397385	39375948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39376369_39376731_39376871_39377395_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032_39397082_39397151
52957	chr1	+	2528	12	FSM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	360	14	-30	-2	multi-exon	FALSE	canonical	3	87	junction_4	15.6743724089108	61	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAATAATTTATGGATT	2620	False	NA	NA	False	NA	NA	NA	92862457	92875649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
52958	chr9	+	1694	11	NNC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	3	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	869.523783458509	1	82	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCCATAATGAATGATGTA	NA	False	NA	NA	False	NA	NA	NA	54493767	54511224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497200_54499677_54499766_54502461_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510567
52959	chr8	-	1526	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212716.2	1568	6	34	8	34	-7	multi-exon	FALSE	canonical	3	158	junction_2	9.8508882848198	337	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACACAGTGGCTGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	106434743	106430290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
52960	chr19	+	2289	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162134.2	2314	3	25	0	-8	0	multi-exon	FALSE	canonical	3	16	junction_1	74.5	62	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	4928742	4935423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4928834_4930148_4930427_4933503
52961	chr5	+	2618	11	FSM	ENSMUSG00000004947.16	ENSMUST00000111142.9	2650	11	32	0	-12	0	multi-exon	TRUE	canonical	3	47	junction_6	35.5758344947803	123	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGGGAAGTTTTGTGT	8491	False	NA	NA	False	NA	NA	NA	136023685	136061726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136055323_136055462_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
52962	chr1	-	3192	10	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	-13	1109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	155.404450418502	1	160	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTTTCTTTCTATGT	8632	False	NA	NA	False	NA	NA	NA	88205314	88191440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88191908_88192251_88194001_88194051_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202818_88204940_88205008_88205095
52963	chr16	-	942	2	Genic_Genomic	ENSMUSG00000084838.4	novel	286	1	NA	NA	-117	609	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGATAATGCTTG	NA	False	NA	NA	False	NA	NA	NA	19995879	19994867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_19995449_19995518
52966	chr16	+	3584	17	ISM	ENSMUSG00000022867.12	ENSMUST00000023580.8	4776	24	48706	6	-19090	-6	3prime_fragment	FALSE	canonical	3	45	junction_13	13.4697287927412	36	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTATGCTGTGTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	76859299	76913662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_76859361_76865940_76866015_76868531_76868681_76871746_76871875_76872158_76872255_76873247_76873410_76873891_76874122_76877211_76877283_76878344_76878574_76880636_76880838_76890490_76890631_76904772_76904952_76906061_76906141_76907953_76908034_76910620_76910745_76911771_76911968_76912277
52967	chr1	+	1431	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	-12	0	-12	0	multi-exon	FALSE	canonical	3	75	junction_1	0	295	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	NA	False	NA	NA	NA	163822445	163824812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_163822547_163823482
52968	chr3	+	1202	4	NNC	ENSMUSG00000053931.12	novel	1053	4	NA	NA	-17	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	2536.62772637654	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGTGATTACATGTG	NA	False	NA	NA	False	NA	NA	NA	121220176	121251595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121220391_121245101_121245118_121248635_121248743_121250730
52969	chr5	-	681	1	ISM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	25348	3721	8055	2388	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATTATTTAATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	5719230	5718549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_5718500_5719200
52970	chrX	-	943	5	NNC	ENSMUSG00000025283.16	novel	1162	6	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	500.765663759008	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGCCTGAGCATTTTT	NA	False	NA	NA	False	NA	NA	NA	153999355	153996133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_153996664_153996892_153996934_153997028_153997092_153998780_153998833_153999098
52972	chr11	-	1715	10	NNC	ENSMUSG00000020528.15	novel	1771	11	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	80.930849922238	3	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCTCTGTATGTGGATA	258	False	NA	NA	False	NA	NA	NA	61652872	61620483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61621129_61622250_61622459_61627737_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
52975	chr6	-	1430	11	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	10	-752	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	234.451188949854	1	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATACTGTAGTCATTGTTT	NA	False	NA	NA	False	NA	NA	NA	95695771	95451874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546673_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
52976	chr18	+	1328	8	NNC	ENSMUSG00000042705.10	novel	1610	7	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	608.916769889827	2	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATTTAAACTCAAGCG	NA	False	NA	NA	False	NA	NA	NA	47091926	47221050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100846_47123566_47123657_47219318_47219379_47220094_47220575_47220662
52977	chr5	+	1453	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	133	19	40	-19	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	1	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGAGTGGGGTCTGCA	4679	False	NA	NA	False	NA	NA	NA	29941070	29972082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
52978	chr2	-	1761	5	Antisense	novelGene_ENSMUSG00000026817.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCACCTCCCCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	32524676	32519555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_32519627_32519858_32519895_32520244_32520408_32521084_32521201_32523301
52979	chr12	+	2008	5	ISM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	24647	0	16779	0	3prime_fragment	FALSE	canonical	3	165	junction_1	22.5831795812724	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTAGTGTTGTGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	55907755	55916521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55914946
52980	chr9	-	1410	4	ISM	ENSMUSG00000025894.12	ENSMUST00000212897.2	2519	5	-185	1662	-185	-1662	intron_retention	FALSE	canonical	3	33	junction_3	393.928363481935	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTGAAATAAATTGCCT	NA	False	NA	NA	False	NA	NA	NA	4309656	4296626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693
52981	chr5	-	2772	10	NNC	ENSMUSG00000029556.13	novel	3191	10	NA	NA	-2233	-9	at_least_one_novel_splicesite	TRUE	canonical	1	6	junction_9	4.34897462017354	63	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAGCACGTGGAAGCTT	7925	False	NA	NA	False	NA	NA	NA	115111386	115087047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115088245_115088752_115088898_115088984_115089104_115090637_115090830_115091385_115091588_115091697_115091847_115093308_115093551_115093874_115094062_115098074_115098275_115111247
52982	chr15	-	1709	12	NNC	ENSMUSG00000002524.18	novel	1881	12	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	619.215846424177	1	76	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	75952743	75942038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942597_75942834_75943030_75943160_75943445_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947675_75949449_75949552_75952698
52983	chr11	-	1025	8	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6903.0483476357	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113075	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106049_33110324_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
52984	chr1	+	2957	2	Antisense	novelGene_ENSMUSG00000025937.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGCAGGGCGGCGGTCT	NA	False	NA	NA	False	NA	NA	NA	13718343	13730744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13721108_13730551
52985	chr13	-	1116	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	0	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	471	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314449	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311585_34312289_34312515_34312854_34312966_34313228_34313338_34314159
52986	chr10	-	1272	9	NNC	ENSMUSG00000020069.17	novel	2168	10	NA	NA	31	3	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_8	176.492917704932	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTTGCTACTTTTTAT	5859	False	NA	NA	False	NA	NA	NA	62859595	62851203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62855171_62855307_62859416
52987	chr1	+	1608	6	ISM	ENSMUSG00000052423.16	ENSMUST00000126699.4	1758	8	1473	1	198	0	3prime_fragment	FALSE	canonical	3	204	junction_1	13.1848397790796	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171099407	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
52988	chr5	+	2461	10	FSM	ENSMUSG00000004947.16	ENSMUST00000111145.10	2493	10	34	-2	1	0	multi-exon	FALSE	canonical	3	84	junction_5	18.5279235376575	96	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATCTGTTGGGAAGTT	8504	False	NA	NA	False	NA	NA	NA	136023698	136061720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
52990	chr4	+	2324	13	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	47	-373	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	677.318789829099	1	144	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGCACGGAGTCTCG	902	False	NA	NA	False	NA	NA	NA	129083741	129113027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090763_129090905_129091045_129094494_129094649_129099921_129100003_129101733_129101827_129103447_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
52991	chr17	-	1086	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	441	860	10	-4	multi-exon	FALSE	canonical	3	126	junction_3	5.45527267879434	45	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGGCCACTAATTCCCAG	NA	False	NA	NA	False	NA	NA	NA	27247542	27239643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
52992	chr8	+	1623	12	FSM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	0	17	0	-17	multi-exon	FALSE	canonical	3	163	junction_6	20.6765727613893	673	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATGCACATCCAAAATAT	8860	False	NA	NA	False	NA	NA	NA	46428564	46449978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
52993	chr17	-	1660	8	NNC	ENSMUSG00000062859.16	novel	1978	8	NA	NA	-719	-20	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	16.6427038619551	2	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAACTTGTGAACTGCA	NA	False	NA	NA	False	NA	NA	NA	28294514	28285744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28294292
52994	chr1	+	2456	2	NIC	ENSMUSG00000026176.14	novel	2957	6	NA	NA	2220	-12	intron_retention	FALSE	canonical	3	27	junction_1	0	205	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACACAAAAAGCACGGTG	1182	False	NA	NA	False	NA	NA	NA	74433540	74436429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74434182_74434614
52995	chr14	+	2216	19	FSM	ENSMUSG00000021993.11	ENSMUST00000063562.9	3015	19	181	618	116	-618	multi-exon	FALSE	canonical	3	187	junction_10	24.3726850752595	196	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGTGTCTCACCTGCTTG	NA	False	NA	NA	False	NA	NA	NA	61022202	61141060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_61022320_61024743_61024918_61025602_61025692_61028335_61028423_61033620_61033685_61039569_61039753_61040261_61040419_61046416_61046466_61048547_61048609_61052401_61052455_61064747_61064902_61066835_61066914_61068561_61068767_61071433_61071544_61080656_61080732_61083832_61083953_61109466_61109589_61112682_61112757_61140816
53001	chr18	+	4547	17	FSM	ENSMUSG00000045629.9	ENSMUST00000051720.6	4536	17	-10	-1	-10	1	multi-exon	TRUE	canonical	3	14	junction_11	4.02336923485777	19	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATACCCTTTTGTCACCTT	NA	False	NA	NA	False	NA	NA	NA	62086135	62148787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_62086239_62094014_62094114_62101059_62101188_62104012_62104119_62106357_62106502_62107519_62107719_62108639_62108714_62110947_62111144_62120626_62120761_62122263_62122306_62122414_62124116_62124208_62124390_62140718_62140870_62141527_62141651_62144877_62145029_62146103_62146301_62147969
53003	chr3	-	1413	6	FSM	ENSMUSG00000038550.11	ENSMUST00000036418.10	1398	6	-18	3	2	-3	multi-exon	FALSE	canonical	3	105	junction_5	32.3604697122894	323	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTAAATGCTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	95789561	95785819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789466
53004	chr13	-	3005	6	NIC	ENSMUSG00000021636.16	novel	3061	7	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	6	39	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTGTGCTCCTTA	NA	False	NA	NA	False	NA	NA	NA	100753461	100732466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100747940_100749093_100753433
53008	chr11	-	1004	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	-103	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	290.128261572818	68	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1367	False	NA	NA	False	NA	NA	NA	59082881	59074700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082753
53009	chr6	+	4151	13	FSM	ENSMUSG00000030207.16	ENSMUST00000111915.8	4221	13	70	0	-62	0	multi-exon	FALSE	canonical	3	64	junction_6	10.7558123821495	7	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTGTCCTTTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	135175044	135213240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_135175100_135186030_135186430_135188832_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
53010	chr7	-	2104	17	NIC	ENSMUSG00000038520.16	novel	8750	17	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	2	3	junction_6	59.6313872365049	4	27	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTGCGCTGGCTGGCA	7882	False	NA	NA	False	NA	NA	NA	44498320	44490460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492288_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
53011	chr6	-	1746	7	FSM	ENSMUSG00000068329.13	ENSMUST00000132099.8	745	7	-894	-107	-9	0	multi-exon	FALSE	canonical	3	30	junction_4	197.549993672488	3	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACAGTCAAAAGTGGGG	1888	False	NA	NA	False	NA	NA	NA	83031561	83028260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029708_83030018_83030052_83030309_83030505_83030593
53012	chr2	-	1409	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	128	16	-19	-16	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	2257	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAGAACACTGAGACAGAA	NA	False	NA	NA	False	NA	NA	NA	174314746	174306875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
53013	chr6	-	1713	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-16	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2867.37584038089	1	94	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAATTATAGACTTTTTA	NA	False	NA	NA	False	NA	NA	NA	51446843	51439737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440217_51440386_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444272_51446650
53014	chr16	+	1272	8	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-119	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1968.59017200283	1	34	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGGCTTATGTGTTCAGG	NA	False	NA	NA	False	NA	NA	NA	84571154	84620047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598490_84606233_84606385_84609786_84609932_84612046_84612157_84613153_84613285_84618147_84618191_84619674
53015	chr4	-	3257	3	Antisense	novelGene_ENSMUSG00002075360.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAGCTATTACTGCGGAA	NA	False	NA	NA	False	NA	NA	NA	117442600	117410066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_117410239_117421815_117422100_117439799
53016	chr8	-	1601	2	NNC	ENSMUSG00000051176.7	novel	1744	4	NA	NA	-88547	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43848564	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749655_43848518
53017	chr16	+	2782	8	NNC	ENSMUSG00000022672.9	novel	3063	22	NA	NA	-18	-30048	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	30.572763655761	6	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGGTTTTACATTTAA	3484	False	NA	NA	False	NA	NA	NA	15455711	15472565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_15455907_15466583_15466661_15466751_15466845_15468514_15468590_15469295_15469405_15470102_15470216_15470314_15471289_15471419
53018	chr14	+	1270	8	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19426	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	209.063900005989	484	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	NA	False	NA	NA	NA	122514878	122639646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122514996_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
53019	chr11	-	2091	3	Antisense	novelGene_ENSMUSG00000023170.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCCTTCGGCGCGCCTTG	9523	False	NA	NA	False	NA	NA	NA	69807377	69804878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_69805259_69805576_69805870_69805959
53021	chr1	+	1948	14	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	0	-7252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	620.632632001674	1	71	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTATTTATTTGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	118555674	118605646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589820_118592663_118592722_118593845_118593937_118596360_118596462_118597118_118597262_118603304_118603357_118605117
53022	chr13	-	2885	14	FSM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	364	0	346	0	multi-exon	FALSE	canonical	3	209	junction_4	22.6835706778766	117	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTCTTTGTATTTGC	NA	False	NA	NA	False	NA	NA	NA	95511496	95487190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_95488211_95489254_95489355_95490457_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
53023	chr16	-	4443	19	NNC	ENSMUSG00000022687.13	novel	4451	19	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	3.04138126514911	21	22	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCTTAGTCACGAGTGA	NA	False	NA	NA	False	NA	NA	NA	44379256	44305415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_44306163_44307074_44307266_44307712_44307790_44307979_44308216_44308872_44309095_44310502_44310626_44310939_44311046_44311534_44311717_44312055_44312263_44312670_44312782_44313175_44313339_44316614_44316923_44319763_44320037_44320712_44321007_44322008_44322153_44323891_44324039_44340587_44340867_44341521_44341699_44378800
53024	chr15	+	4010	28	NNC	ENSMUSG00000015365.16	novel	4133	27	NA	NA	16	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.0858923800346	1	180	20	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCAGACCCCTTTCTG	2923	False	NA	NA	False	NA	NA	NA	88867127	88939345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_88867271_88869727_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565_88895625_88896102_88896188_88896250_88896399_88902352_88902453_88904463_88904643_88905370_88905514_88906203_88906326_88907815_88907916_88908869_88909035_88910665_88910840_88931009_88931160_88937582_88937689_88938429_88938568_88938713_88938806_88939018
53025	chr19	+	1060	11	NNC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	343.06069433848	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCCTGGACCTTTTGTG	1024	False	NA	NA	False	NA	NA	NA	8713251	8717984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8713270_8713350_8713402_8713574_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
53026	chr11	-	1265	8	NNC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	69.4691239593063	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCATTGATTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	113600351	113588996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113589383_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
53027	chr11	+	1627	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	1071	26	4	-26	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGCTAAATAAAACAACATA	NA	False	NA	NA	False	NA	NA	NA	26337205	26421850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
53028	chr11	+	2941	3	FSM	ENSMUSG00000044949.5	ENSMUST00000051053.5	1012	3	92	-2021	92	2021	multi-exon	FALSE	canonical	3	148	junction_1	5	45	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGTCTTTGCCATTA	4573	False	NA	NA	False	NA	NA	NA	32405461	32468708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_32405547_32449224_32449462_32466089
53029	chr6	-	1290	1	FSM	ENSMUSG00000051695.7	ENSMUST00000053015.7	1830	1	401	139	401	-139	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGTTTGGGTTTTTTTGGC	NA	False	NA	NA	False	NA	NA	NA	86502902	86501612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86501600_86502900
53031	chr17	-	2414	8	ISM	ENSMUSG00000037098.19	ENSMUST00000148021.3	3333	12	13845	257	13845	-254	3prime_fragment	FALSE	canonical	3	64	junction_5	13.5631553730491	38	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGAGCCCCGCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	26223589	26208272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_26209860_26209949_26210091_26210231_26210388_26210636_26210775_26211555_26211638_26213159_26213301_26216902_26217007_26223524
53032	chr16	-	2270	14	NNC	ENSMUSG00000022538.21	novel	3180	14	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	141.390265225693	1	107	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATATTCTTATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30406381	30380186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392178_30393359_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
53035	chr1	-	2457	9	Antisense	novelGene_ENSMUSG00000031506.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGGCTGAGTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	135072446	135061618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_135061660_135062175_135062360_135062566_135062654_135063836_135063913_135065060_135065198_135065503_135065612_135066856_135067014_135069677_135069795_135070896
53036	chr12	+	1968	11	FSM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	-55	0	-15	0	multi-exon	FALSE	canonical	3	21	junction_2	15.3766056072203	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	NA	False	NA	NA	NA	98594400	98636071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_98594594_98598221_98598297_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
53037	chr10	-	2256	2	FSM	ENSMUSG00000020184.16	ENSMUST00000151725.2	474	2	-44	-1738	0	1738	multi-exon	FALSE	canonical	3	316	junction_1	0	1	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGCTCACAACTGTCTG	NA	False	NA	NA	False	NA	NA	NA	117546663	117543884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117545934_117546456
53038	chr8	+	1183	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	-96	-2	63	0	mono-exon	FALSE	NA	NA	NA	NA	NA	127	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	94905772	94906955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94905800_94907000
53039	chr17	-	966	7	NNC	ENSMUSG00000024387.14	novel	961	7	NA	NA	-21	0	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_6	342.135816112062	19	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	False	NA	NA	False	NA	NA	NA	35340170	35335173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340000
53041	chr11	-	2034	10	FSM	ENSMUSG00000020599.14	ENSMUST00000106704.3	3464	10	98	1332	58	-1332	multi-exon	FALSE	canonical	2	4	junction_9	9.53486131241108	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCACCACTGGCCAGCTC	NA	False	NA	NA	False	NA	NA	NA	109188834	109148159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109188763
53042	chr4	+	1329	10	FSM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	8	0	8	0	multi-exon	FALSE	canonical	3	105	junction_6	17.6243378301319	444	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	NA	False	NA	NA	NA	131570788	131595097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
53044	chr17	-	847	1	Intergenic	novelGene_67	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGATCAAGGAGATAAAAA	NA	False	NA	NA	False	NA	NA	NA	22170481	22169634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_22169600_22170500
53047	chr9	+	1913	9	NNC	ENSMUSG00000032077.6	novel	2539	10	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	44.3830978526736	5	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTCCTAACTGGGTATT	NA	False	NA	NA	False	NA	NA	NA	46194314	46210081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_46194472_46197640_46197693_46199125_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
53048	chr7	-	986	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	30	3	30	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	114305440	114304454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114304500_114305400
53049	chr8	+	1161	3	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	88	-3	intron_retention	FALSE	canonical	3	17818	junction_2	1752	38	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCCATAAAGCAAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	123829176	123831967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123830096_123830636_123830694_123831782
53050	chr10	+	1282	6	NNC	ENSMUSG00000078440.11	novel	1444	5	NA	NA	48	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	373.461109086341	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAAGTGCTGGCTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	81220348	81224181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073_81223315_81223540_81223766_81223883
53051	chr13	+	2061	18	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	-1	29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	195.541551261864	1	91	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCT	1334	False	NA	NA	False	NA	NA	NA	59733232	59782595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747604_59757331_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
53052	chr4	+	988	1	Antisense	novelGene_ENSMUSG00000006219.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCCAAGGAGGCCAGCAG	2105	False	NA	NA	False	NA	NA	NA	141303372	141304360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_141303400_141304400
53053	chr2	+	1346	12	NNC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	573.338677981367	2	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCACAGTCTTTCTCAGC	NA	False	NA	NA	False	NA	NA	NA	90884638	90889775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886053_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
53054	chr1	+	1134	6	NIC	ENSMUSG00000052428.11	novel	1573	7	NA	NA	35	1	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	213.321353830319	18	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTCTCCTGTTCAAAA	NA	False	NA	NA	False	NA	NA	NA	167136339	167158355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_167136503_167136874_167136953_167141675_167141736_167146830_167146899_167153444_167153590_167157735
53055	chr10	+	1305	13	NNC	ENSMUSG00000058799.17	novel	1365	13	NA	NA	15	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	633.313179503895	1	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACATTTTTTTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	111309156	111330866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328836_111329191_111329304_111329410_111329431_111330031_111330155_111330655
53056	chr1	+	2661	14	NIC	ENSMUSG00000038305.16	novel	2313	12	NA	NA	5	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_1	19.478405582174	55	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTTGCTCTTTCTA	NA	False	NA	NA	False	NA	NA	NA	57813325	57986124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_57813651_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
53057	chr15	-	1838	12	NNC	ENSMUSG00000016664.17	novel	3083	12	NA	NA	-9	47	intron_retention	FALSE	canonical	3	25	junction_1	174.707973581797	10	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTCTCTTTGTGTGTCCT	7134	False	NA	NA	False	NA	NA	NA	83348780	83259760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83260018_83261892_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
53058	chr2	-	935	2	NNC	ENSMUSG00000087528.2	novel	2070	3	NA	NA	-162	-977	intron_retention	FALSE	canonical	3	7	junction_1	0	8	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCGGAAGTCACAGGTTGG	NA	False	NA	NA	False	NA	NA	NA	129068520	129067088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_129067831_129068327
53059	chr2	-	309	1	Intergenic	novelGene_2706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACCAAGGTGTTCATTA	787	False	NA	NA	False	NA	NA	NA	129065121	129064812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_129064800_129065100
53061	chr7	+	1386	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	122	25	67	-7	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	2	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAAATCAGGCATGCTA	NA	False	NA	NA	False	NA	NA	NA	142606597	142621646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
53063	chr18	+	2694	15	FSM	ENSMUSG00000024561.12	ENSMUST00000097530.5	2833	15	103	36	-12	11	multi-exon	FALSE	canonical	3	25	junction_10	20.6853245819645	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	74401348	74415767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
53065	chr14	+	1933	9	ISM	ENSMUSG00000021893.15	ENSMUST00000143472.8	4613	21	26868	2	-2013	0	3prime_fragment	TRUE	canonical	3	220	junction_1	27.8691137282835	63	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTAGTTTAATGTCCAG	NA	False	NA	NA	False	NA	NA	NA	31085499	31093941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
53067	chr3	+	1366	10	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-48	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	456.317574058968	1	45	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAAGCGTGCTGGATT	NA	False	NA	NA	False	NA	NA	NA	32762865	32781114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32772740_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
53068	chr7	-	2156	4	ISM	ENSMUSG00000070371.12	ENSMUST00000156152.3	1132	6	21	-161	0	0	intron_retention	TRUE	canonical	3	21	junction_3	34.7083083233203	258	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	NA	NA	NA	127534601	127531809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310
53069	chr5	+	2498	16	NNC	ENSMUSG00000056310.15	novel	3044	16	NA	NA	48	-498	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	103.775955254042	1	130	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACAGTTTGGGTTTTA	4976	False	NA	NA	False	NA	NA	NA	130285923	130369906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298004_130298289_130303461_130303585_130306775_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
53071	chr7	-	350	5	NNC	ENSMUSG00000061028.8	novel	2018	11	NA	NA	801	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	119.901000829851	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	8986	False	NA	NA	False	NA	NA	NA	19318263	19314967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19315084_19315305_19315331_19316156_19316264_19318079_19318127_19318208
53072	chr6	-	1530	4	FSM	ENSMUSG00000048668.17	ENSMUST00000112152.8	2015	4	103	382	-14	-17	multi-exon	FALSE	canonical	3	13	junction_3	145.265274584121	536	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCCAGCCGTTGTCAGT	633	False	NA	NA	False	NA	NA	NA	128339672	128334344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128335157_128336068_128336318_128339020_128339148_128339330
53073	chr7	-	2180	13	NNC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-433	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	40.4298947424908	93	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGAATGTTGTCAAGC	NA	False	NA	NA	False	NA	NA	NA	140908036	140877097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354_140904530_140907767
53074	chr4	-	850	1	Antisense	novelGene_ENSMUSG00000102813.2_AS_novelGene_ENSMUSG00000065493.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGGCAGTATACTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	150153845	150152995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_150153000_150153800
53076	chr11	-	2401	4	NNC	ENSMUSG00000020173.18	novel	4488	12	NA	NA	114803	-671	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	208.934333118221	2	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATACACAGGCTGGAGCC	NA	False	NA	NA	False	NA	NA	NA	12204837	12187781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_12188060_12199649_12199914_12201032_12201143_12203088
53078	chr12	-	1692	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1867	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	82.7858933166237	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	9539	False	NA	NA	False	NA	NA	NA	110805494	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794610_110800521_110800675_110805381
53079	chr17	+	1568	6	NNC	ENSMUSG00000046711.17	novel	1681	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2002.80826840714	1	83	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTGGTGTAAGGAGCA	NA	False	NA	NA	False	NA	NA	NA	27775606	27782644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411_27781789_27781838
53080	chr2	-	1829	13	FSM	ENSMUSG00000027489.16	ENSMUST00000000895.13	1829	13	6	-6	6	6	multi-exon	FALSE	canonical	3	34	junction_6	10.0840220150494	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCCTGTCTCTTGTCTG	7317	False	NA	NA	False	NA	NA	NA	154400780	154386312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
53081	chr12	+	1453	1	Antisense	novelGene_ENSMUSG00000021120.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGACTGATAGTTTACAA	NA	False	NA	34	True	NA	NA	NA	79128451	79129904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_79128500_79129900
53082	chr7	+	1331	11	FSM	ENSMUSG00000030763.8	ENSMUST00000033025.7	1369	11	29	9	29	0	multi-exon	FALSE	canonical	0	0	junction_5	88.7783757454483	1932	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGCTACATCTGTACA	6853	False	NA	NA	False	NA	NA	NA	122977233	123029572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003708_123009946_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
53083	chr16	+	1123	6	NNC	ENSMUSG00000002845.15	novel	2667	9	NA	NA	-12	36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	346.039535313525	18	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGGCTCTGGAGTGA	NA	False	NA	NA	False	NA	NA	NA	38383210	38411744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38383410_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402479_38411461
53084	chr9	-	1298	5	FSM	ENSMUSG00000032344.18	ENSMUST00000070742.14	4049	5	611	2140	292	-877	multi-exon	FALSE	canonical	1	6	junction_4	3.56195171219375	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCACTTTTTTGAGCTCA	5884	False	NA	NA	False	NA	NA	NA	78349875	78339947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78340550_78341594_78341698_78342722_78342966_78344584_78344805_78349745
53085	chr9	-	2198	1	Genic_Genomic	ENSMUSG00000032344.18	novel	NA	NA	NA	NA	10170	8	mono-exon	FALSE	NA	NA	NA	NA	NA	11	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAATGTATCAGTCTTAG	7179	False	NA	NA	False	NA	NA	NA	78339997	78337799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_78337800_78340000
53086	chr11	+	1254	2	FSM	ENSMUSG00000035530.14	ENSMUST00000132618.2	383	2	-309	-562	57	-1	multi-exon	FALSE	canonical	3	12768	junction_1	0	7	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGATGTCCAGATTGCA	4647	False	NA	NA	False	NA	NA	NA	100211400	100212921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100211876_100212142
53087	chr6	+	4157	13	NNC	ENSMUSG00000030207.16	novel	4221	13	NA	NA	-63	-21	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	20.9165006633519	2	152	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGCTGTGTACAGGA	NA	False	NA	NA	False	NA	NA	NA	135175043	135213215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_135175100_135186030_135186430_135188802_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
53088	chr13	-	2803	15	ISM	ENSMUSG00000021629.11	ENSMUST00000067246.6	3179	16	4454	0	4367	0	3prime_fragment	FALSE	canonical	3	198	junction_14	29.3414104525829	110	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGCAAATGAATAATT	NA	False	NA	NA	False	NA	NA	NA	100965481	100939155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_100939970_100940369_100940499_100943041_100943269_100945591_100945788_100947813_100947944_100949155_100949314_100949805_100950015_100950190_100950480_100951103_100951275_100953516_100953594_100954633_100954722_100957626_100957715_100961423_100961510_100962959_100963027_100965407
53089	chr15	+	1398	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	689	2	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4474	False	NA	NA	False	NA	NA	NA	80139713	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140727_80140836
53092	chr5	+	2301	1	Intergenic	novelGene_887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	82	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCCATTTCTTGCACAT	NA	False	NA	NA	False	NA	NA	NA	144854531	144856832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_144854500_144856800
53097	chr2	-	2086	4	NIC	ENSMUSG00000015790.17	novel	1151	9	NA	NA	-3	0	intron_retention	FALSE	canonical	3	337	junction_2	11.2644968324772	20	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	NA	False	NA	NA	NA	26806347	26803394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26804908_26805443_26805527_26805607_26806019_26806268
53098	chr2	-	1725	9	Antisense	novelGene_ENSMUSG00000026728.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTCCCGGAGCAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	13587592	13579147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_13579813_13580393_13580411_13583221_13583315_13583397_13583560_13584229_13584358_13584828_13585048_13585448_13585493_13586421_13586507_13587280
53099	chr10	+	1162	10	NNC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	0	79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	717.623564445116	23	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGTGCGCCTTGGTTGTT	2289	False	NA	NA	False	NA	NA	NA	79795988	79803524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801899_79802039_79802105_79802178_79802240_79802503_79802561_79803153_79803223_79803304
53100	chr14	+	3490	19	Genic_Genomic	ENSMUSG00000115718.2	novel	4979	1	NA	NA	375	41931	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	20	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCGGAAGAAGAGACAGCG	5197	False	NA	NA	False	NA	NA	NA	119113668	119160203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_119114677_119116755_119116925_119118421_119118552_119120775_119120982_119123018_119123072_119123909_119124038_119124473_119124643_119126667_119126803_119129179_119129245_119133262_119133320_119137397_119137454_119138911_119138962_119139426_119139568_119144306_119144369_119146844_119146984_119148753_119148915_119149852_119149981_119152602_119152687_119159654
53101	chr1	+	2411	16	Antisense	novelGene_ENSMUSG00000094410.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGCGTCAAAGATGGCG	NA	False	NA	NA	False	NA	NA	NA	133550720	133589102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_133550889_133552220_133552551_133553587_133553671_133554506_133555005_133561499_133561596_133563731_133563795_133565086_133565198_133566269_133566350_133566568_133566688_133566777_133566973_133568341_133568476_133573467_133573587_133575074_133575268_133581713_133581773_133583082_133583137_133588993
53103	chr10	+	1332	8	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	2	-21	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_2	1932.37835903039	1	81	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAAGAGTATGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	126899474	126903145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900318_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
53106	chr7	-	1301	9	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	5094	-6	37	0	3prime_fragment	FALSE	canonical	3	360	junction_6	42.8711732986164	300	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	30139820	30134406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359_30139489_30139568
53107	chr7	-	3587	5	ISM	ENSMUSG00000040177.11	ENSMUST00000208526.2	3703	6	-37	5040	-23	2703	5prime_fragment	FALSE	canonical	3	85	junction_4	3.96074487943871	34	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGATATCCGATATGCAAG	NA	False	NA	NA	False	NA	NA	NA	130964462	130949954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
53108	chr8	-	1854	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	4	intron_retention	FALSE	canonical	3	157	junction_2	25.2544080106215	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578640	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
53109	chr9	+	1527	8	NIC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	2	1	intron_retention	FALSE	canonical	3	687	junction_3	71.8132498717532	1625	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGTTTTCATTTAAGC	2371	False	NA	NA	False	NA	NA	NA	21323134	21331557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
53110	chr2	-	1311	6	NNC	ENSMUSG00000016256.11	novel	1441	6	NA	NA	67	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	207.927872109537	1	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTGTGTACTTTATTTAC	5396	False	NA	NA	False	NA	NA	NA	174280765	174269286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280096_174280578
53111	chrX	+	1956	7	NNC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	553.186652245173	1	111	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAGACTTGTTGGCATG	NA	False	NA	NA	False	NA	NA	NA	72235821	72246528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241660_72245455_72245552_72245645
53113	chr1	+	1253	3	ISM	ENSMUSG00000050122.20	ENSMUST00000169057.3	1499	12	23482	61	-9524	-61	intron_retention	FALSE	canonical	2	3	junction_2	1.5	2	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAGTCTGTTGTAGG	NA	False	NA	NA	False	NA	NA	NA	37216411	37226625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_37216548_37218197_37218299_37225609
53115	chr11	+	2840	10	Antisense	novelGene_ENSMUSG00000020457.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCGGCCCTGCGCCGACG	502	False	NA	NA	False	NA	NA	NA	3106174	3143423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_3107937_3109984_3110147_3114556_3114711_3115569_3115679_3120586_3120705_3129396_3129506_3136061_3136134_3137236_3137409_3138938_3139057_3143359
53116	chr3	+	1043	10	NNC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	-3	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	252.581340033925	7	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATGTTACTGCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	145281998	145309873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_145282049_145282605_145282737_145283975_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
53117	chr8	-	2782	5	FSM	ENSMUSG00000031987.7	ENSMUST00000034469.7	3594	5	809	3	809	-3	multi-exon	FALSE	canonical	3	265	junction_4	22.6605383872493	58	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATAACTGTTGTCACCTC	NA	False	NA	NA	False	NA	NA	NA	125675254	125635328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_125637503_125638479_125638548_125640755_125640893_125642399_125642520_125674971
53118	chr14	-	1163	2	FSM	ENSMUSG00000021917.17	ENSMUST00000226290.2	1241	2	79	-1	60	0	multi-exon	FALSE	canonical	3	1787	junction_1	0	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30723247	30721783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30722861_30723161
53119	chr10	-	1779	3	FSM	ENSMUSG00000061983.8	ENSMUST00000220171.2	1795	3	2	14	2	0	multi-exon	FALSE	canonical	3	2594	junction_2	565	59	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	23663098	23661095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_23662779_23662891_23662943_23663053
53120	chr11	-	1320	12	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	67	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	400.587770636437	1	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190773	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179351_119179497_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
53121	chr11	-	785	6	NNC	ENSMUSG00000020857.12	novel	1012	5	NA	NA	-93	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3450.44864329264	11	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCAGTGTTCAGTACTC	NA	False	NA	NA	False	NA	NA	NA	93846702	93840640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_93840873_93842725_93842839_93843625_93843728_93845861_93846019_93846320_93846451_93846651
53122	chr7	+	1908	8	NNC	ENSMUSG00000041769.14	novel	700	6	NA	NA	1749	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	238.35713215463	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATGCCACTGCAGTCTT	NA	False	NA	NA	False	NA	NA	NA	138450337	138484781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_138450420_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
53123	chr14	+	4233	1	FSM	ENSMUSG00000043881.10	ENSMUST00000061222.9	4526	1	296	-3	296	3	mono-exon	FALSE	NA	NA	NA	NA	NA	33	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCCTGGCTTTATGTTT	3505	False	NA	NA	False	NA	NA	NA	79664246	79668479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_79664200_79668500
53124	chr8	-	1202	8	NIC	ENSMUSG00000008892.13	novel	1354	9	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	769.185097545262	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	23083773	23067101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23067619_23068058_23068117_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
53125	chr11	-	3453	16	ISM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	3027	3	3027	0	3prime_fragment	TRUE	canonical	2	3	junction_6	4.91075916285411	48	28	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGCGAATGTACTC	NA	False	NA	NA	False	NA	NA	NA	103251206	103222325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103251072
53127	chr16	+	1710	9	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	12	-16	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	246.1090967437	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACACTAAATCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	48104161	48114584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48108984_48109070_48109401_48109569_48109690_48109742_48109964_48110191_48111376_48111678_48113273_48113470_48114061
53130	chr9	-	1188	9	Antisense	novelGene_ENSMUSG00000003299.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	239	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGCTCGCGGCGGTGGCT	5722	False	NA	NA	False	NA	NA	NA	20920127	20914197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_20914293_20914378_20914444_20914546_20914700_20917428_20917482_20918120_20918239_20918657_20918835_20918924_20919037_20919118_20919195_20919788
53131	chr11	-	1414	7	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATGGCGGCGCCTCAA	NA	False	NA	NA	False	NA	NA	NA	75656368	75623764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642779_75646403_75646488_75647629_75647844_75650109_75650253_75655443_75655499_75655675
53132	chr10	+	3111	12	ISM	ENSMUSG00000019996.18	ENSMUST00000020173.16	4252	18	108711	-37	-4583	-31	3prime_fragment	FALSE	canonical	3	234	junction_5	27.9349894641762	92	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATAAAATGTTTGACATA	NA	False	NA	NA	False	NA	NA	NA	20132927	20157305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_20133044_20137604_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
53133	chr12	-	1310	7	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1	-3	intron_retention	FALSE	canonical	3	54	junction_6	84.9478598252416	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	7673	False	NA	NA	False	NA	NA	NA	110807360	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
53134	chr11	-	3040	4	ISM	ENSMUSG00000020482.5	ENSMUST00000020776.5	3372	5	784	1	784	-1	3prime_fragment	FALSE	canonical	3	395	junction_1	38.6091526281874	104	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATCTGTAATCCTGTATA	NA	False	NA	NA	False	NA	NA	NA	5491403	5478887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5481534_5484242_5484381_5484764_5484990_5491372
53135	chr2	+	552	1	Intergenic	novelGene_2802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATGTGAATGTGTACGCA	NA	False	NA	NA	False	NA	NA	NA	168847158	168847710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168847200_168847700
53136	chr9	+	2773	14	NNC	ENSMUSG00000032591.16	novel	2262	18	NA	NA	-3	-3	intron_retention	TRUE	non_canonical	0	0	junction_3	14.6679217680653	17	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTGTATAGAGTGC	6660	False	NA	NA	False	NA	NA	NA	107957631	107962191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107957730_107958343_107958492_107958583_107958693_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107961594_107961691_107961836_107961972
53137	chr1	-	1345	9	NNC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	-10	-244	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	417.758883059355	8	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAACTTGAAGAAATAAAGC	NA	False	NA	NA	False	NA	NA	NA	92401499	92367244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92397576_92397801_92398538_92398708_92401384
53138	chr11	-	1542	5	ISM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	3262	794	-210	7	intron_retention	FALSE	canonical	3	390	junction_1	155.645430385861	4	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACCAGCCCTGTGATCC	NA	False	NA	NA	False	NA	NA	NA	50098356	50090986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986
53139	chr3	-	1898	12	NNC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	-9	29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1145.80081346289	1	100	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGAACCTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	108352494	108333898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334287_108334570_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
53140	chr7	-	2296	16	NIC	ENSMUSG00000038520.16	novel	8750	17	NA	NA	0	62	intron_retention	FALSE	canonical	3	189	junction_4	25.5217554255188	19	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTGGGTTTTTGT	7888	False	NA	NA	False	NA	NA	NA	44498314	44490393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
53141	chr7	+	1879	6	ISM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	327	2892	276	-2	3prime_fragment	FALSE	canonical	3	213	junction_1	25.4165300542777	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTTGTGTAGAGTACTT	NA	False	NA	NA	False	NA	NA	NA	139705896	139714245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
53142	chr11	-	3342	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	18	2	-16	-2	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	522	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTTCTGGGTTATTAC	NA	False	NA	NA	False	NA	NA	NA	20781038	20773577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
53144	chr4	-	1123	9	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	19	7	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	974.764386595551	13	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTCATTGATTGGGGG	8882	False	43031431	NA	False	NA	NA	NA	43031417	43028018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43028294_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
53145	chr17	+	1715	10	FSM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	-56	13	-8	-9	multi-exon	FALSE	canonical	3	95	junction_2	196.74976273379	1	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTTTTATTATATGTTT	NA	False	NA	NA	False	NA	NA	NA	26471916	26499684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
53146	chr19	-	667	2	ISM	ENSMUSG00000024831.15	ENSMUST00000025751.11	5569	15	20897	2039	5596	-191	3prime_fragment	FALSE	canonical	3	76	junction_1	0	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGCTGCTTGGTGACTG	NA	False	NA	NA	False	NA	NA	NA	3312120	3311114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_3311636_3311974
53147	chr14	-	1681	12	NNC	ENSMUSG00000021814.18	novel	2727	13	NA	NA	57	361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	393.838516221438	1	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTTTAATGTTAAAAGA	8260	False	NA	NA	False	NA	NA	NA	20529919	20506235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514757_20514915_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
53150	chr8	-	1652	9	FSM	ENSMUSG00000015994.11	ENSMUST00000016138.11	1930	9	31	247	31	151	multi-exon	FALSE	canonical	3	814	junction_5	99.1573875210516	418	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTCCATAGTGTTTGATG	NA	False	NA	NA	False	NA	NA	NA	26505647	26488996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408
53151	chr2	+	932	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	31	4	26	-4	multi-exon	FALSE	canonical	3	1606	junction_1	43.6458474542539	11827	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGTTTTCTCAAGTTA	NA	False	NA	NA	False	NA	NA	NA	164611848	164614823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
53152	chr2	+	1676	6	NNC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-4	-14	intron_retention	FALSE	non_canonical	0	0	junction_1	58.9935589704503	507	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTGACACTTGATACACT	NA	False	NA	139	True	NA	NA	NA	119857980	119863061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119858058_119860565_119860693_119860769_119861024_119861296_119861354_119861787_119862482_119862594
53153	chr15	+	2093	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	15	6	15	-5	multi-exon	FALSE	canonical	3	579	junction_9	64.3868516598433	1	106	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATACTGTGCACTTTT	NA	False	NA	NA	False	NA	NA	NA	81900584	81924280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
53155	chr4	+	834	2	Antisense	novelGene_ENSMUSG00000036114.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1644	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGCGCGCGGAGCCGCGG	NA	False	NA	NA	False	NA	NA	NA	41712036	41713516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41712815_41713460
53157	chr6	+	3568	18	NNC	ENSMUSG00000030323.14	novel	4122	29	NA	NA	-6	8006	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	15.0723744177298	15	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACCCTGTCAAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	115830534	115884586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115883024_115883250
53159	chr17	+	1375	9	NIC	ENSMUSG00000052712.18	novel	2812	9	NA	NA	17	-1	combination_of_known_junctions	FALSE	canonical	2	13	junction_3	115.980332384418	858	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGCATGGGTTGGTTGC	328	False	NA	NA	False	NA	NA	NA	29487778	29520495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29487977_29496830_29496922_29501033_29501242_29501702_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
53160	chr9	+	1360	9	NNC	ENSMUSG00000032369.14	novel	1471	9	NA	NA	51	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	139.425383270049	2	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATGTTACTTTACAA	NA	False	NA	NA	False	NA	NA	NA	92132445	92154034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_92132478_92140096_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148643_92148812_92148927_92151867_92152030_92153581
53161	chr5	-	2546	11	ISM	ENSMUSG00000053293.10	ENSMUST00000111171.6	5580	13	581	5075	581	-5075	5prime_fragment	FALSE	canonical	3	173	junction_4	20.9334660293034	2	72	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACAGACCACCAACAGTG	NA	False	NA	NA	False	NA	NA	NA	135422819	135410069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_135411391_135411924_135412099_135412480_135412584_135412692_135412818_135412946_135413021_135413706_135413799_135415677_135415850_135417490_135417572_135420475_135420635_135421163_135421380_135422790
53162	chr4	-	944	5	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	-212	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4529.00703107204	2	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAATGTCTAGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	119139595	119135183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136165_119136203_119136397_119138766_119138850_119139342
53164	chr13	-	1734	5	FSM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	34	3866	-14	-3866	multi-exon	FALSE	canonical	3	63	junction_3	8.98262211161084	145	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAATAAGTATTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	38819051	38786682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
53165	chr12	+	2121	12	NNC	ENSMUSG00000047022.19	novel	2117	11	NA	NA	68	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	26.351094195294	6	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATATTGTTGGTATTT	NA	False	NA	NA	False	NA	NA	NA	57277344	57543979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_57277398_57296614_57296738_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
53167	chr8	+	1886	2	NNC	ENSMUSG00000031864.17	novel	607	5	NA	NA	-2345	-809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTATTGTCCATATTCCA	8047	False	NA	NA	False	NA	NA	NA	69279163	69281251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69280809_69281010
53168	chr4	-	1136	3	Antisense	novelGene_ENSMUSG00000029009.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCGGCGCTTGGGATGC	NA	False	NA	NA	False	NA	NA	NA	148137837	148136368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_148136454_148136552_148136737_148136970
53171	chr13	-	3041	9	NNC	ENSMUSG00000094870.9	novel	2966	8	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	69.6992422842602	8	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTATTTTATGTGTATGG	NA	False	NA	NA	False	NA	NA	NA	120252334	120226727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120239968_120240057_120244307_120244453_120250395_120250498_120251684_120251824_120252314
53172	chr18	-	1277	7	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	34	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAGGCTACAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	32999453	32992279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32992376_32994076_32994175_32994551_32994704_32995979_32996096_32996231_32996313_32997705_32997896_32998909
53173	chr6	-	2502	3	FSM	ENSMUSG00000030189.16	ENSMUST00000203157.2	1035	3	320	-1787	320	1542	multi-exon	FALSE	canonical	3	3049	junction_2	113	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAATTTGTCAAAGAAT	7922	False	NA	NA	False	NA	NA	NA	131345661	131340275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_131342369_131344727_131344827_131345351
53176	chr17	+	1005	6	NIC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	4	-18	intron_retention	FALSE	canonical	3	1011	junction_1	65.8221847100201	48	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTATTTTTGGAATG	7392	False	NA	NA	False	NA	NA	NA	36198837	36203499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36198890_36198975_36199095_36199246_36199315_36200089_36200493_36201806_36201981_36203310
53177	chr3	-	744	5	ISM	ENSMUSG00000028089.6	ENSMUST00000029730.5	3008	23	41002	-2	-2089	2	3prime_fragment	FALSE	canonical	3	267	junction_4	32.8738117655985	3	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTATGTTGCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	97476517	97468055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416
53179	chr19	-	2678	5	FSM	ENSMUSG00000024782.8	ENSMUST00000025696.5	2809	5	132	-1	132	1	multi-exon	FALSE	canonical	3	26	junction_1	7.58287544405155	38	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTGTCTCCATGTTG	NA	False	NA	NA	False	NA	NA	NA	29025229	28998231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_29000347_29003611_29003731_29004570_29004744_29015271_29015392_29025078
53180	chr5	-	2484	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	194	9	10	3	multi-exon	FALSE	canonical	3	83	junction_6	16.6092675514317	360	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAACTGTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	130031696	130017860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
53181	chr7	-	2561	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	-346	0	-346	0	multi-exon	FALSE	canonical	3	1236	junction_9	117.461666323765	804	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	NA	NA	NA	19006088	18990853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
53182	chrX	+	2078	15	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	412	-6	combination_of_known_junctions	FALSE	canonical	3	50	junction_1	10.561771651014	13	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTATTTCTTCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	149371663	149426868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
53183	chr18	+	1859	1	Intergenic	novelGene_4494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCTAAAGAGACTCCCC	2903	False	NA	NA	False	NA	NA	NA	7872789	7874648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_7872800_7874600
53185	chr15	+	959	6	ISM	ENSMUSG00000022201.17	ENSMUST00000128475.9	1115	7	-13	3300	7	34	5prime_fragment	FALSE	canonical	3	539	junction_4	43.3755691605309	12	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGCAGCAACAGCTGCC	47	False	NA	NA	False	NA	NA	NA	12117923	12146336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234
53186	chr1	-	1761	1	Intergenic	novelGene_348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTTCCTCTTTTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	18010346	18008585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_18008600_18010300
53187	chr17	+	1611	1	Antisense	novelGene_ENSMUSG00000046329.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGGATCGGGGATTTGGG	NA	False	NA	NA	False	NA	NA	NA	57350712	57352323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_57350700_57352300
53189	chr3	+	2790	8	FSM	ENSMUSG00000074212.8	ENSMUST00000090178.10	9477	8	227	6460	15	1168	multi-exon	FALSE	canonical	3	31	junction_3	5.20204041600946	38	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCTTAAAAATAAGAATGT	NA	False	NA	NA	False	NA	NA	NA	137573662	137615858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137573818_137591033_137591206_137598568_137598715_137607947_137608134_137609643_137609739_137610505_137610616_137611645_137611819_137614105
53190	chr19	+	3454	2	Antisense	novelGene_ENSMUSG00000003680.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	102	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTGAGAGCTATTCTGG	291	False	NA	NA	False	NA	NA	NA	8757024	8760738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_8759462_8759721
53191	chr4	-	1056	8	Antisense	novelGene_ENSMUSG00000028729.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	295	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTTTTCAACAGGGAC	6864	False	NA	NA	False	NA	NA	NA	118483182	118478044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_118478177_118478519_118478731_118479266_118479389_118480492_118480583_118480805_118480882_118481329_118481425_118482718_118482883_118483016
53192	chr15	+	1219	10	Antisense	novelGene_ENSMUSG00000022247.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCACTTCCGGTTCTGC	5607	False	NA	NA	False	NA	NA	NA	10476308	10486002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_10476683_10476892_10477022_10478754_10478857_10478978_10479029_10479157_10479233_10479334_10479384_10479665_10479740_10481776_10481842_10483373_10483492_10485819
53193	chr6	-	3124	7	ISM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	9984	-2	9983	2	intron_retention	FALSE	canonical	3	375	junction_6	71.4531703674201	1	174	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTCTCTTTATTTGAT	5648	False	NA	NA	False	NA	NA	NA	49230961	49220855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315
53194	chr2	-	2303	13	NNC	ENSMUSG00000001767.6	novel	3428	14	NA	NA	-3	-776	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	72.3688468886993	11	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACTTGAGTCCGAGCAT	NA	False	NA	NA	False	NA	NA	NA	145776637	145760174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145767419_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
53195	chr11	-	1219	4	NIC	ENSMUSG00000020460.16	novel	928	5	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	7569	junction_3	1572.56626781407	262	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTAGTATTGTGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	29497861	29495847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_29496423_29496702_29497261_29497680_29497746_29497840
53197	chr15	-	1864	12	FSM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	189	7	189	2	multi-exon	TRUE	canonical	3	660	junction_1	60.8163473021321	378	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGCCTTTCTGCTTCAG	154	False	NA	NA	False	NA	NA	NA	10470413	10446848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
53200	chr17	-	1600	8	ISM	ENSMUSG00000061046.10	ENSMUST00000140738.8	1194	9	-38	2980	4	0	5prime_fragment	FALSE	canonical	3	40	junction_3	8.60232526704263	215	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGGTACCAGACACAC	4348	False	NA	NA	False	NA	NA	NA	26004552	26001796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
53201	chr5	+	862	6	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	162	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8684.88731993686	4	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697843	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115698924_115699230_115699305_115699391_115699578_115700484_115700626_115701341
53202	chr19	-	1166	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	-2	0	0	0	multi-exon	FALSE	canonical	3	122	junction_9	336.647010794011	748	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5856	False	NA	NA	False	NA	NA	NA	46327065	46318982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
53203	chr19	-	1028	2	NNC	ENSMUSG00000024665.9	novel	3150	12	NA	NA	7108	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGTAATTTTATT	NA	False	NA	64	True	NA	NA	NA	10041443	10040152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10040424_10040686
53204	chr8	-	1856	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-25	-241	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	437.138976041945	1	114	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85573484	85568719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572687_85572878_85572981_85573336
53205	chr11	-	2834	3	ISM	ENSMUSG00000033352.12	ENSMUST00000046963.10	3695	11	93566	1084	2283	1006	3prime_fragment	FALSE	canonical	3	228	junction_1	19.5	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCCCAAAAAAGACAAAACG	NA	False	NA	NA	False	NA	NA	NA	65585557	65580152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_65581631_65582553_65582600_65584247
53206	chr5	+	1663	7	FSM	ENSMUSG00000029464.11	ENSMUST00000127608.8	2198	7	587	-52	12	-9	multi-exon	FALSE	canonical	3	424	junction_4	30.9861079984061	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAAAACTGTGTTTGAG	8051	False	NA	NA	False	NA	NA	NA	122510525	122520956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519558_122520110_122520240_122520323
53208	chr8	+	1080	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	12	1944	-12	321	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	41	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGTTTTACATATGGAA	NA	False	NA	NA	False	NA	NA	NA	107783520	107785619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
53210	chr2	-	2374	9	ISM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	82	5163	-32	-4762	5prime_fragment	FALSE	canonical	3	336	junction_2	33.9335287731765	3	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGCTTTATTAAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	73044709	72928307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
53211	chr8	-	3242	1	ISM	ENSMUSG00000031953.3	ENSMUST00000034431.3	3878	3	10439	32	10439	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	38	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTTTATTATCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	112592943	112589701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_112589700_112592900
53212	chr4	+	1569	7	Antisense	novelGene_ENSMUSG00000028494.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAGAGAAAAGAAACTGGT	NA	False	NA	NA	False	NA	NA	NA	86575002	86586943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_86575639_86576815_86576955_86578327_86578507_86580170_86580453_86582667_86582742_86586597_86586800_86586886
53213	chr6	+	937	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	6	0	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCTTTCTGGTTGCATA	NA	False	NA	NA	False	NA	NA	NA	148256153	148257090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148257100
53214	chr8	+	2909	8	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	14	-100	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	27.5058435349914	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCTGCTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	73197789	73214385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73198120_73198331_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
53215	chr9	+	1439	11	FSM	ENSMUSG00000010057.9	ENSMUST00000010201.9	1441	11	2	0	2	0	multi-exon	FALSE	canonical	3	98	junction_4	11.6721891691319	315	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGTACTGCTTCAGCC	NA	False	NA	NA	False	NA	NA	NA	107419426	107422905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443_107422587_107422689
53216	chr13	+	2046	1	Antisense	novelGene_ENSMUSG00000041297.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTAAAATTCTTGCAAAA	NA	False	NA	NA	False	NA	NA	NA	17886255	17888301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_17886300_17888300
53218	chr3	-	2651	4	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	-470	3438	-427	1568	5prime_fragment	FALSE	canonical	3	36	junction_3	115.494107593803	222	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACCTATCATTTGATAAA	NA	False	NA	NA	False	NA	NA	NA	102074716	102068933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_102070850_102072670_102072804_102073088_102073128_102074153
53219	chr10	-	1354	13	NNC	ENSMUSG00000040043.18	novel	1481	13	NA	NA	-69	89	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	87.9821241313636	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAAAGAAGTTTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	128012417	127969103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973565_127973844_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
53220	chr1	-	825	3	ISM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	5180	2	596	0	3prime_fragment	FALSE	canonical	3	598	junction_1	26.5	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGTGGTTCTCATTGA	NA	False	NA	NA	False	NA	NA	NA	171117417	171116137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_171116545_171116743_171116835_171117090
53222	chr3	+	2751	13	FSM	ENSMUSG00000042572.13	ENSMUST00000038356.13	3077	13	296	30	52	-30	multi-exon	TRUE	canonical	3	944	junction_1	76.7428968844819	222	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGCTCTAATAAACTTA	NA	False	NA	NA	False	NA	NA	NA	89681218	89691277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89681346_89683383_89683489_89683818_89683924_89684537_89684589_89686735_89686877_89687061_89687147_89687743_89687805_89687993_89688085_89688195_89688255_89688353_89688403_89688674_89688771_89689077_89689145_89689563
53223	chr7	-	1793	4	Antisense	novelGene_ENSMUSG00000108878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	96	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACAATGAGCCTGCGCAG	NA	False	NA	NA	False	NA	NA	NA	83548374	83541462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83541678_83544748_83544985_83546966_83547413_83547478
53224	chr17	+	2206	18	NIC	ENSMUSG00000040828.11	novel	2557	22	NA	NA	3386	0	combination_of_known_splicesites	TRUE	canonical	1	1	junction_1	3.80038242475602	19	16	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATCAGGTTGCTAAGTGC	6833	False	NA	NA	False	NA	NA	NA	56938536	56971456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56938591_56939289_56939367_56940509_56940583_56943270_56943336_56948476_56948591_56954727_56954812_56957742_56957894_56958794_56958891_56959456_56959540_56960579_56960757_56961434_56961549_56962096_56962187_56962988_56963048_56967170_56967246_56968241_56968371_56969661_56969846_56970267_56970426_56971033
53225	chr8	+	1848	9	NNC	ENSMUSG00000060098.12	novel	2277	10	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	468.458642785038	2	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAACTCAAATGAAATACTA	1906	False	NA	NA	False	NA	NA	NA	106937654	106964683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106937715_106939007_106939204_106943676_106943788_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853
53226	chrX	-	1275	5	NNC	ENSMUSG00000031370.13	novel	2735	11	NA	NA	0	660	intron_retention	FALSE	non_canonical	0	0	junction_4	326.299996169169	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATCTGGTATCCTGTC	NA	False	NA	NA	False	NA	NA	NA	162741585	162735926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740964_162741279
53227	chr7	-	1275	1	Antisense	novelGene_ENSMUSG00000070699.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTCGAAGCTGCCTCAA	NA	False	NA	NA	False	NA	NA	NA	28444979	28443704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_28443700_28445000
53228	chr10	-	2926	12	FSM	ENSMUSG00000036099.17	ENSMUST00000047711.13	4479	12	-34	1587	-5	-1587	multi-exon	FALSE	canonical	3	26	junction_7	11.4039285676849	129	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGATGTGTGCTGGGGTTT	3430	False	NA	NA	False	NA	NA	NA	93871644	93805548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829517_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
53229	chr1	-	2634	12	FSM	ENSMUSG00000037375.17	ENSMUST00000044190.12	2839	12	208	-3	-23	3	multi-exon	FALSE	canonical	3	12	junction_1	5.12327374676559	42	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGTCTTGATACTTC	NA	False	NA	NA	False	NA	NA	NA	192453323	192195132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_192196284_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
53230	chr11	+	2044	7	ISM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	455	1	-52	-1	intron_retention	FALSE	canonical	3	72	junction_2	56.6862711186168	305	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGTCTCCTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	5049380	5056090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184
53231	chr10	-	4467	17	ISM	ENSMUSG00000015305.7	ENSMUST00000015449.6	7183	20	71760	2189	-51816	-2189	3prime_fragment	FALSE	canonical	1	3	junction_11	2.44869225301997	31	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTCATCCATCCCCAAA	NA	False	NA	NA	False	NA	NA	NA	8690054	8600171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_8601525_8603621_8603754_8605091_8606201_8609359_8609474_8615084_8615236_8615937_8616148_8617191_8617362_8618191_8618328_8620251_8620396_8621879_8621955_8626902_8627250_8632392_8632526_8656282_8656385_8659961_8660075_8662111_8662199_8665324_8665366_8690004
53232	chr17	-	2045	5	ISM	ENSMUSG00000044857.9	ENSMUST00000236082.2	2808	7	4455	189	184	161	3prime_fragment	FALSE	canonical	3	544	junction_3	43.6692111217961	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTTTCTTAATAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	27414990	27408762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298
53233	chr14	-	1383	5	FSM	ENSMUSG00000022223.10	ENSMUST00000227139.2	867	5	107	-623	-6	-4	multi-exon	FALSE	canonical	3	161	junction_3	15.0499169432924	801	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCACTGGCTTCCGCTG	NA	False	NA	NA	False	NA	NA	NA	56137578	56134743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270
53234	chr3	+	3310	2	Antisense	novelGene_ENSMUSG00000005034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	58	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGTCTAGAGGAGCATC	NA	False	NA	NA	False	NA	NA	NA	146447413	146450878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_146448456_146448610
53236	chr2	-	1888	9	NNC	ENSMUSG00000027496.16	novel	1905	9	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	522.934030256207	1	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGGAGTACGTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	172212423	172198117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209086_172210911_172210953_172212314
53237	chr12	+	1827	6	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	4436	3	43	-1	3prime_fragment	FALSE	canonical	3	289	junction_1	49.6531972787252	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTAAAGCAGTGATGGGT	NA	False	NA	NA	False	NA	NA	NA	109511323	109538152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
53238	chr3	-	1358	10	NNC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	3	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	405.64592600438	3	49	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATTTAAATAAAGGTCAAA	6157	False	NA	NA	False	NA	NA	NA	153618589	153612952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615707_153615785_153615897_153616004_153616327_153616526_153617561_153617670_153618570
53240	chr3	-	613	6	ISM	ENSMUSG00000040562.13	ENSMUST00000066530.7	854	8	726	-14	726	14	3prime_fragment	FALSE	canonical	3	637	junction_1	38.5870444579525	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCCTCAGCCAAGCCTC	2861	False	NA	NA	False	NA	NA	NA	107892950	107889248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933
53242	chr9	-	1741	3	ISM	ENSMUSG00000032437.11	ENSMUST00000035010.10	4221	16	61854	0	61854	0	3prime_fragment	FALSE	canonical	3	727	junction_2	44	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGATTTCTGATACCTTG	NA	False	NA	NA	False	NA	NA	NA	115077635	115071648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_115073114_115075112_115075326_115077572
53243	chr6	-	2196	10	NNC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	-1	-2	intron_retention	TRUE	non_canonical	0	0	junction_2	132.313973768159	2	104	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGAGCCTGTTGTTGGG	6928	False	NA	NA	False	NA	NA	NA	88818918	88812897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88813435_88813506_88813723_88815120_88815268_88815361_88815461_88815619_88815739_88815826_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
53244	chr11	+	1573	11	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	208	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	220.621848419417	1	58	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1438	False	NA	NA	False	NA	NA	NA	101010971	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015148_101015271_101015399_101015795_101015949_101016028_101016191_101016857
53245	chr1	-	3103	9	FSM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	26	-1373	26	186	multi-exon	FALSE	canonical	3	24	junction_8	13.3041346956501	1	115	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGTGTTTACATTCTTT	NA	False	NA	NA	False	NA	NA	NA	136881342	136771827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136881231
53246	chr2	+	1638	11	FSM	ENSMUSG00000068580.12	ENSMUST00000090174.11	2008	11	369	1	-9	-1	multi-exon	FALSE	canonical	1	23	junction_1	26.2152627299442	314	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCAGATGTTTTTTCTGT	280	False	NA	NA	False	NA	NA	NA	119039483	119047529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119039665_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042386_119042496_119045314_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
53248	chr13	-	4027	17	NIC	ENSMUSG00000021375.12	novel	3917	16	NA	NA	-92	-21	combination_of_known_junctions	TRUE	canonical	2	6	junction_14	25.847811802936	1	136	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAAACTGTCTAATTCA	NA	False	NA	NA	False	NA	NA	NA	46940206	46902591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_46904103_46905556_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46934101_46934141_46938721_46938869_46939988
53249	chr10	+	961	1	Intergenic	novelGene_3513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTGAGGAAATTGGAGGAA	1749	False	NA	NA	False	NA	NA	NA	95219771	95220732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_95219800_95220700
53251	chr3	-	947	3	ISM	ENSMUSG00000054942.14	ENSMUST00000199397.2	2842	4	87	3442	87	2644	5prime_fragment	FALSE	canonical	3	188	junction_1	1.5	1949	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGATATGTGTCAATA	NA	False	NA	NA	False	NA	NA	NA	152045923	152040473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_152041067_152043362_152043682_152045888
53252	chr7	+	1547	3	NNC	ENSMUSG00000011267.9	novel	1530	3	NA	NA	40	-6	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	121.5	1276	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGCCTGGACTTTCT	767	False	NA	NA	False	NA	NA	NA	19311251	19314575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_19311554_19311678_19311886_19313537
53253	chr12	+	1423	4	NIC	ENSMUSG00000071379.3	novel	697	5	NA	NA	-9	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	39.0412886854702	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	17778217	17841930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_17778310_17836147_17836550_17837545_17837652_17841107
53254	chr4	-	1043	9	NIC	ENSMUSG00000028684.15	novel	1489	10	NA	NA	0	17	combination_of_known_junctions	FALSE	canonical	2	7	junction_4	116.944898884047	6	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGGCTTATGTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	116851561	116847396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
53255	chr19	-	1424	5	NIC	ENSMUSG00000024666.7	novel	1590	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_4	52.1464284491278	143	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1789	False	NA	NA	False	NA	NA	NA	10554447	10547843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554332
53256	chr11	-	920	3	Antisense	novelGene_ENSMUSG00000017781.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	6	17	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTTATAATCTATCTCAG	NA	False	NA	NA	False	NA	NA	NA	75519618	75516130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75516409_75518486_75518577_75519066
53257	chr5	+	968	1	FSM	ENSMUSG00000070697.5	ENSMUST00000090413.6	1629	1	657	4	657	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGTTTGTAATACC	NA	False	NA	78	True	NA	NA	NA	88702977	88703945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_88703000_88703900
53258	chr5	+	2459	6	NNC	ENSMUSG00000107385.4	novel	2020	7	NA	NA	21	171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6.7705243519243	26	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCTATAATAATTAGGTAC	8053	False	NA	NA	False	NA	NA	NA	67621266	67635146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67630396_67631405_67634249
53261	chr8	+	2117	11	FSM	ENSMUSG00000118664.1	ENSMUST00000239509.1	2811	11	7	687	7	525	multi-exon	FALSE	canonical	0	0	junction_10	62.7792959501777	472	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATTGTTTGTTGTTAAC	NA	False	NA	NA	False	NA	NA	NA	39473005	39618680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39614047_39614112_39617866
53262	chr6	+	3597	8	FSM	ENSMUSG00000033174.18	ENSMUST00000113585.9	3676	8	73	6	4	-6	multi-exon	FALSE	canonical	2	10	junction_6	2.55550625999976	39	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGAGGCCTGTGTCTGCG	NA	False	NA	NA	False	NA	NA	NA	88701466	88805336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88701554_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
53263	chr6	-	2069	3	FSM	ENSMUSG00000029844.10	ENSMUST00000120363.2	2043	3	-24	-2	-24	2	multi-exon	FALSE	canonical	2	5	junction_2	5.5	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGCCTAAGCATCTTGT	NA	False	NA	NA	False	NA	NA	NA	52135321	52132572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_52134070_52134546_52134642_52134844
53265	chr9	-	1813	3	NNC	ENSMUSG00000032553.15	novel	3166	6	NA	NA	447	-70	at_least_one_novel_splicesite	FALSE	non_canonical	3	124	junction_1	80.5	2	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTCTTCAACATTTGT	NA	False	NA	NA	False	NA	NA	NA	103069064	103066358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103066653_103066898_103067621_103068267
53266	chr11	+	1741	11	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.850644452138	1	79	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1226	False	NA	NA	False	NA	NA	NA	101010759	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011364_101011478_101011721_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
53267	chr15	+	1998	1	FSM	ENSMUSG00000077737.3	ENSMUST00000104549.3	81	1	-1731	-186	-1731	186	mono-exon	FALSE	NA	NA	NA	NA	NA	1	86	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAAATTCTGTGGTGAT	2276	False	NA	NA	False	NA	NA	NA	5146154	5148152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_5146200_5148200
53268	chr1	-	751	6	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1089	3	654	-3	3prime_fragment	FALSE	canonical	3	5309	junction_1	712.412801681722	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTCGGAGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	16173797	16171521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733
53269	chr7	+	2086	15	NIC	ENSMUSG00000030924.17	novel	2492	20	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	12.6751001284134	19	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCCTCCTCTTAGATGT	NA	False	NA	NA	False	NA	NA	NA	119393374	119448166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_119393726_119398787_119398901_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525_119426600_119431893_119431999_119433486_119433625_119442464_119442558_119443070_119443288_119447954
53270	chr4	-	1048	8	ISM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	76521	0	-14548	0	3prime_fragment	FALSE	canonical	3	169	junction_7	25.7515602855993	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAATTCAATTTTCCAT	NA	False	NA	NA	False	NA	NA	NA	83165955	83158046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849
53271	chr7	-	2136	7	FSM	ENSMUSG00000098022.8	ENSMUST00000080834.15	2181	7	36	9	36	-8	multi-exon	FALSE	canonical	2	6	junction_6	14.682756326158	101	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTAATATAATGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	29772289	29755470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29772205
53272	chr6	+	3424	11	ISM	ENSMUSG00000030310.11	ENSMUST00000204074.2	1740	13	2114	-1939	2114	-9	3prime_fragment	FALSE	canonical	3	75	junction_3	11.1427106217473	40	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTGTATTGGTTACT	NA	False	NA	NA	False	NA	NA	NA	114280937	114294484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_114281029_114281747_114281881_114284657_114284793_114284985_114285090_114285518_114285644_114287098_114287212_114287423_114287556_114288765_114288869_114290399_114290501_114291255_114291424_114292265
53273	chr11	+	2079	6	NIC	ENSMUSG00000019461.13	novel	1927	7	NA	NA	11	1	intron_retention	FALSE	canonical	3	67	junction_3	3.54400902933387	29	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCGGATGTGATGGGAG	NA	False	NA	NA	False	NA	NA	NA	69737453	69741870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69737902_69738160_69738400_69738482_69738850_69739039_69739202_69740837_69741000_69741169
53274	chr2	-	617	5	NNC	ENSMUSG00000018770.10	novel	714	5	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1845.53750639211	7	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	NA	False	NA	NA	NA	73741656	73738790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739033_73739591_73739722_73740207_73740286_73741298_73741405_73741595
53275	chr3	-	2370	18	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	4	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	225.138588613869	1	120	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTTGAAGCCAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	95662191	95647300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647632_95648633_95648749_95649385_95649434_95649627_95649730_95649889_95649991_95653096_95653166_95653340_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658149_95658292_95658836_95658943_95660318_95660443_95661630_95661828_95662069
53276	chr11	-	1820	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	81	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1126.93230196988	1	106	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	5282	False	NA	NA	False	NA	NA	NA	88846210	88814847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821037_88821172_88824273_88824311_88826662_88826778_88827844_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
53277	chr7	-	1920	18	NNC	ENSMUSG00000078762.11	novel	2187	19	NA	NA	1657	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.7155331708827	1	77	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAATAAAGCATTTCAAAG	412	False	NA	NA	False	NA	NA	NA	30362701	30353158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30353471_30353594_30353728_30356373_30356504_30356586_30356659_30357016_30357170_30357262_30357332_30357941_30358091_30358284_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647
53278	chr2	-	4670	3	ISM	ENSMUSG00000017667.10	ENSMUST00000103084.4	8205	5	4891	3176	4891	-3176	3prime_fragment	FALSE	canonical	3	23	junction_1	2	14	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTGTTGTGTGAGACT	9431	False	NA	NA	False	NA	NA	NA	165225288	165219359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165223807_165224610_165224704_165225158
53279	chr13	+	1675	10	NNC	ENSMUSG00000038683.17	novel	1722	10	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	275.937638329594	1	64	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATACAGAGCTTAATTA	NA	False	NA	NA	False	NA	NA	NA	41154516	41166484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_41154890_41158212_41158376_41161491_41161609_41161693_41161762_41162361_41162415_41162694_41162830_41162923_41163022_41164658_41164759_41165809_41165934_41166040
53280	chr14	-	590	1	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	252	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGATGGGCTAGGAGGAG	NA	False	NA	NA	False	NA	NA	NA	63380584	63379994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63380000_63380600
53281	chr12	+	2271	20	FSM	ENSMUSG00000071454.14	ENSMUST00000164607.9	2390	20	114	5	11	0	multi-exon	FALSE	canonical	0	0	junction_4	90.3998198218487	113	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTGTGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	3622546	3831393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
53282	chr2	-	1321	3	Intergenic	novelGene_2585	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	47	junction_2	6.5	47	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGAGGCTGGAATCTTT	NA	False	NA	NA	False	NA	NA	NA	26530256	26527194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_26527646_26528052_26528108_26529441
53283	chr2	-	1376	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108772.8	779	5	-1	-596	-1	0	multi-exon	FALSE	canonical	3	30	junction_4	46.2729672703189	133	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	NA	False	NA	NA	NA	181335741	181330214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181335671
53284	chr2	+	2491	2	Intergenic	novelGene_2569	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_1	0	97	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGGAAGAGCAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	17940977	17953365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_17941086_17950982
53285	chr2	+	1805	15	ISM	ENSMUSG00000017760.17	ENSMUST00000103092.9	3646	16	905	1463	-1	-450	3prime_fragment	FALSE	canonical	3	800	junction_1	78.7051135439063	1	87	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATAGCTTCCAACTGGG	NA	False	NA	NA	False	NA	NA	NA	164675725	164681489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
53286	chr8	-	1272	4	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-33	-242	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	579.039050688485	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTGTCTCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	85573492	85568720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85569531_85572490_85572695_85572878_85572981_85573336
53287	chr7	-	3225	13	NIC	ENSMUSG00000002602.17	novel	4265	20	NA	NA	-137	-16	combination_of_known_splicesites	TRUE	canonical	0	0	junction_11	2.09496751499609	10	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTCAGTCACTATTCT	3380	False	NA	NA	False	NA	NA	NA	25474240	25456713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_25458439_25460175_25460313_25460829_25460990_25462708_25462819_25463367_25463490_25463846_25463940_25465942_25466021_25466217_25466314_25469642_25469735_25470057_25470191_25472523_25472551_25472767_25472919_25473939
53288	chr9	+	2629	14	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	-813	-228	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	109.906684464326	1	118	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGATGTGCTAGCATAA	4190	False	NA	NA	False	NA	NA	NA	57001718	57035420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57001828_57002582_57002866_57004005_57004275_57005155_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57020912_57035334
53290	chr5	-	1274	5	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3456.5444720848	2	64	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGTATTGTTGTCCTTTT	6796	False	NA	NA	False	NA	NA	NA	148989818	148985041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985722_148986536_148986712_148987104_148987251_148987397_148987562_148989709
53291	chr3	-	1803	12	NNC	ENSMUSG00000033439.13	novel	1616	11	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	53.9182117073536	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATCAATCTGAGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	116388525	116374745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116384053_116384206_116385841_116385909_116386114_116386160_116388287
53292	chr7	-	2035	5	NNC	ENSMUSG00000070436.13	novel	2274	5	NA	NA	11	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	790.999802465209	1	95	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACTTTTCCAATGAAAT	NA	False	NA	NA	False	NA	NA	NA	99002193	98994658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995634_98996165_98996365_98996472_98996572_98998009_98998672_99002093
53293	chrX	-	817	1	ISM	ENSMUSG00000061778.11	ENSMUST00000112248.9	2487	15	43390	0	43312	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTCTCTAATTGATA	NA	False	NA	NA	False	NA	NA	NA	163719981	163719164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_163719200_163720000
53294	chr3	+	1935	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	176	1571	31	662	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	2	104	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCCTCCCCAGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	105866860	105875505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
53295	chr12	-	1452	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	54	365	-1	-365	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	2	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGAAACTTGGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	36206770	36142198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
53297	chr12	-	1553	6	NIC	ENSMUSG00000021276.11	novel	1579	6	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	181.287616786145	830	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATACATATTAATCCTGT	3400	False	NA	NA	False	NA	NA	NA	110855528	110839597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110840564_110843274_110843405_110846118_110846249_110849851_110849981_110850323_110850493_110855499
53299	chr10	-	1268	5	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	2594	junction_4	786.689066594929	126	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	NA	False	NA	NA	NA	23663098	23661080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23661576_23661799_23662779_23662891_23662943_23663053
53300	chr11	+	2377	6	ISM	ENSMUSG00000000142.16	ENSMUST00000052915.14	4260	11	22174	2	-1098	-2	3prime_fragment	FALSE	canonical	3	47	junction_4	4.95580467734555	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCAGCCTCATCTTTGG	NA	False	NA	NA	False	NA	NA	NA	108833348	108841607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
53302	chr8	+	1611	7	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-23839	511	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	513.859713886539	1	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGCATTCAACGTTAGGG	NA	False	NA	NA	False	NA	NA	NA	20120008	20173505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20120262_20143455_20143649_20157802_20158009_20163109_20163409_20167037_20167158_20169060_20169120_20173024
53303	chr9	-	1723	5	NIC	ENSMUSG00000097177.9	novel	602	5	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	52.4976189936268	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATTCTTACACTAGTC	NA	False	NA	NA	False	NA	NA	NA	88740854	88738200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740755
53304	chrX	+	2431	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	6	70	6	-70	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	2	145	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGTTTAACACTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	47345744	47371260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
53306	chr7	+	1327	6	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	21	-4	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	122.008852137867	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCACTTTGACTCAGCC	NA	False	NA	NA	False	NA	NA	NA	132212457	132308142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_132212560_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320
53307	chr15	+	2613	16	NIC	ENSMUSG00000054263.13	novel	2844	17	NA	NA	46	-47	combination_of_known_junctions	FALSE	canonical	2	7	junction_15	8.17964954424495	22	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATACTCATATGTATAAAA	NA	False	NA	NA	False	NA	NA	NA	7159098	7214777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_7159308_7183867_7184029_7186636_7186749_7188871_7189003_7194009_7194174_7196363_7196539_7198492_7198748_7202336_7202467_7202871_7203042_7205040_7205187_7206912_7207076_7207384_7207456_7208279_7208494_7211333_7211514_7214197_7214300_7214547
53308	chr11	-	3007	1	Antisense	novelGene_ENSMUSG00000018411.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	33	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	104180055	104177048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_104177000_104180100
53309	chr4	-	1804	7	NNC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	0	-94	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	198.402578948292	30	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTCAGGGGCCCTTGGGG	NA	False	NA	NA	False	NA	NA	NA	134262569	134252968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260037_134262468
53310	chr15	-	1496	9	FSM	ENSMUSG00000022617.16	ENSMUST00000170334.8	2063	9	567	0	137	0	multi-exon	FALSE	canonical	3	290	junction_3	35.8355619462009	485	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1786	False	NA	NA	False	NA	NA	NA	89313496	89310562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251
53311	chr16	-	2660	10	NNC	ENSMUSG00000022948.17	novel	1826	12	NA	NA	-4	-1	intron_retention	FALSE	canonical	0	0	junction_9	35.4655109808924	3	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCAGACTGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	93400695	93380346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_93380573_93382066_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400471
53312	chr10	+	2776	3	NNC	ENSMUSG00000111919.2	novel	326	2	NA	NA	-61	4048	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	2.5	421	31	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTAGAAGGATATGATTA	NA	False	NA	NA	False	NA	NA	NA	88540395	88544985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88540492_88542264_88544098_88544138
53313	chr8	-	2145	6	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	190.847163982072	1074	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9745	False	NA	NA	False	NA	NA	NA	123939499	123931002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123939379
53314	chr6	+	3267	13	NNC	ENSMUSG00000032827.16	novel	4810	20	NA	NA	-11	4845	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	4.25163367294137	17	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAGGAAAAAAATGAT	43	True	NA	NA	False	NA	NA	NA	4903006	5121353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_4903032_4905225_4906845_5045935_5046069_5057457_5057579_5063990_5064096_5077479_5077616_5083040_5083107_5100431_5100588_5110999_5111054_5113600_5113831_5115118_5115216_5115308_5115481_5121000
53315	chr5	+	802	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	6540.45910926748	54	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121342596	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344802_121346472_121346639_121346844
53316	chr11	-	1812	9	NNC	ENSMUSG00000015837.16	novel	2037	8	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	325.316672643749	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTTTAACCAGCCCTGT	NA	False	NA	NA	False	NA	NA	NA	50101618	50090991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50091357_50091532_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
53319	chr5	+	1246	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	-151	6	-48	-3	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	371	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGGCTGTCTGCAGTG	1053	False	NA	NA	False	NA	NA	NA	137639547	137641158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
53320	chr12	-	2209	2	Intergenic	novelGene_4287	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	12	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAATTTTCAAAACCAGG	NA	False	NA	NA	False	NA	NA	NA	3608032	3601833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_3603951_3607940
53321	chr17	+	1656	3	FSM	ENSMUSG00000034595.18	ENSMUST00000190496.2	1395	3	-259	-2	-259	0	multi-exon	FALSE	canonical	3	80	junction_1	4	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCCTTCCTTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	36179035	36186488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36179678_36184617_36184832_36185688
53322	chr9	+	1777	9	NNC	ENSMUSG00000032602.7	novel	1783	9	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	297.62129880101	1867	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5049	False	NA	NA	False	NA	NA	NA	108539268	108561840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108539532_108546964_108547024_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
53323	chr6	-	1668	4	NNC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	-4	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	389.106954733814	15	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGACTCTCCAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	82629855	82623695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82625018_82628417_82628460_82629095_82629149_82629604
53324	chr13	-	2204	4	FSM	ENSMUSG00000058331.16	ENSMUST00000144183.3	2312	4	92	16	10	-16	multi-exon	FALSE	canonical	3	13	junction_3	2.44948974278318	92	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTTTTTAATGTATTGT	NA	False	NA	NA	False	NA	NA	NA	67903255	67895934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67897842_67899728_67899825_67900506_67900634_67903181
53325	chr17	-	2627	10	NIC	ENSMUSG00000056133.6	novel	2649	10	NA	NA	8	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	5.35412613473634	20	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATCTACGTCTTGCCCAA	NA	False	NA	NA	False	NA	NA	NA	7652855	7630217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_7631457_7637075_7637208_7637754_7637891_7639195_7639414_7641821_7641948_7643808_7644039_7644334_7644517_7646602_7646748_7646972_7647027_7652690
53326	chr8	-	1375	8	NIC	ENSMUSG00000003813.16	novel	2074	9	NA	NA	0	189	intron_retention	FALSE	canonical	3	805	junction_2	197.827279850533	9	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85567270	85562059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
53327	chr15	+	1385	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-26	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	646	1	65	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCTATGTGGGTTTTCAG	4458	False	NA	NA	False	NA	NA	NA	80139697	80141739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140431_80140723_80140834
53328	chr2	-	925	7	NIC	ENSMUSG00000026750.7	novel	1160	8	NA	NA	4	-5	combination_of_known_splicesites	FALSE	canonical	1	19	junction_2	645.680175387853	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAGTGAGTGGTTGTAAT	2384	False	NA	NA	False	NA	NA	NA	38533928	38478052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_38478301_38480708_38480861_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
53329	chr13	-	2946	3	FSM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	66	1	66	-1	multi-exon	FALSE	canonical	3	1082	junction_1	15.5	3549	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTATTTTGAGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	14787684	14782769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_14785326_14786007_14786190_14787476
53332	chr6	-	2613	14	FSM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	336	0	193	0	multi-exon	FALSE	canonical	3	303	junction_7	38.1766371135774	107	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTGTTTAAAGTGA	NA	False	NA	NA	False	NA	NA	NA	86710029	86668749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156_86691242_86694367_86694434_86694973_86695087_86698322_86698421_86699550_86699648_86703054_86703179_86709892
53333	chr2	+	2364	15	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	37	-298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	182.647047273015	1	111	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATTTCCAATGTTTACTG	530	False	NA	NA	False	NA	NA	NA	31462699	31507232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495285_31503083_31503120_31504722_31504795_31505509_31505638_31506190
53334	chr8	-	3387	9	FSM	ENSMUSG00000031539.7	ENSMUST00000163739.3	3417	9	18	12	16	-12	multi-exon	FALSE	canonical	0	0	junction_8	7.29618907375624	44	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTCCTGGGGACTATGT	NA	False	NA	NA	False	NA	NA	NA	23295602	23277381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295529
53335	chr3	-	632	1	Intergenic	novelGene_3148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTCAATCCCAGCACT	NA	False	NA	NA	False	NA	NA	NA	88733827	88733195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_88733200_88733800
53337	chr11	-	1301	12	NIC	ENSMUSG00000075528.14	novel	1516	12	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	2	10	junction_7	176.559076339951	67	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACATGGTTGTATACTG	NA	False	NA	NA	False	NA	NA	NA	101308206	101297669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302051_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
53338	chr11	-	1361	4	NNC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	-2	-16	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	123.047416334788	669	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTTGTGAGATTCTG	NA	False	NA	NA	False	NA	NA	NA	80033003	80027519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_80028106_80028743_80028894_80030625_80031150_80032902
53339	chr10	+	1812	6	NIC	ENSMUSG00000038240.14	novel	2127	8	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	28.8679753360017	3	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	NA	NA	NA	43097490	43316598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43289510_43289544_43315794
53341	chr2	-	3192	1	Intergenic	novelGene_2759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	110	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGCCACACACACCTTT	NA	False	NA	NA	False	NA	NA	NA	157877411	157874219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_157874200_157877400
53342	chr2	+	1696	3	Antisense	novelGene_ENSMUSG00000039983.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTCTGAGTGACGGAG	NA	False	NA	NA	False	NA	NA	NA	118848267	118859865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_118849650_118857622_118857869_118859797
53344	chr3	-	1574	1	Intergenic	novelGene_3079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCCTGAGCTATTTAA	6380	False	NA	NA	False	NA	NA	NA	9617143	9615569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_9615600_9617100
53346	chr17	-	1784	9	FSM	ENSMUSG00000015474.17	ENSMUST00000171121.9	1710	9	-75	1	15	0	multi-exon	TRUE	canonical	3	52	junction_2	7.8700381193486	229	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCTTGGCTTATTCCC	3855	False	NA	NA	False	NA	NA	NA	34846484	34835636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846298
53348	chr17	-	3652	5	NNC	ENSMUSG00000023935.11	novel	1160	8	NA	NA	19151	-72	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	7.8541390362025	8	60	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTCACCGGACATCCTCT	NA	False	NA	NA	False	NA	NA	NA	45766601	45756877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45766489
53350	chr10	-	1778	1	Intergenic	novelGene_3484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGTCCACAACCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	74555767	74553989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74554000_74555800
53351	chr10	-	1404	13	NNC	ENSMUSG00000040043.18	novel	1481	13	NA	NA	-115	79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	87.9821241313636	1	34	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTCTTTTGCAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	128012463	127969113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973842_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
53352	chr3	-	899	6	Antisense	novelGene_ENSMUSG00000033900.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACCTGGAGGCGGGGCAA	NA	False	NA	NA	False	NA	NA	NA	82281451	82265483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_82265558_82266276_82266429_82267193_82267281_82270596_82270921_82278484_82278708_82281412
53353	chr19	-	1916	7	NIC	ENSMUSG00000024889.6	novel	1455	8	NA	NA	5	-7	intron_retention	FALSE	canonical	3	266	junction_5	43.5446769294352	10	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAACATGGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	4675663	4672629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674792_4675040_4675125_4675220_4675324_4675460
53354	chr12	-	786	6	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	69	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4130.33502757343	4	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGTTCTGTATTCTAA	NA	False	NA	NA	False	NA	NA	NA	65120605	65109193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65109515_65110451_65110550_65113411_65113552_65115775_65115884_65116724_65116827_65120588
53355	chrX	+	3762	8	ISM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	7	1331	7	-1331	5prime_fragment	FALSE	canonical	3	325	junction_1	49.0588983794386	141	90	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAAATCCCAAGTACAGT	NA	False	NA	NA	False	NA	NA	NA	93410729	93459236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065
53356	chr13	+	1170	6	NIC	ENSMUSG00000021537.10	novel	1226	5	NA	NA	-30	118	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	645.774263965358	3861	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGTTTGGTAAATTT	NA	False	NA	NA	False	NA	NA	NA	81931366	81945153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_81931477_81932759_81932896_81934961_81935077_81938289_81938526_81940074_81940267_81944772
53358	chr13	-	382	4	FSM	ENSMUSG00000021660.15	ENSMUST00000133826.2	569	4	-8	195	2	-195	multi-exon	FALSE	canonical	3	6398	junction_3	146.166571645731	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTGGCAGCAAACACCTT	NA	False	NA	NA	False	NA	NA	NA	98453512	98449741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98449802_98450146_98450261_98452737_98452807_98453373
53359	chr12	+	1311	7	FSM	ENSMUSG00000004788.12	ENSMUST00000136495.3	957	7	-11	-343	-2	0	multi-exon	FALSE	canonical	0	0	junction_5	128.430266422418	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTTCGTTTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	85266275	85273267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85271328_85271396_85272776
53360	chr14	-	1421	11	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	11	-268	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	239.825957727682	3	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAACTAGAGGACAC	4838	False	NA	NA	False	NA	NA	NA	54754839	54744911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745240_54748813_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
53361	chr5	+	1868	4	Intergenic	novelGene_703	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	51	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGGAAAAAAAATACAATC	NA	False	NA	NA	False	NA	NA	NA	34311256	34325753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_34311450_34320865_34321095_34323258_34323698_34324746
53362	chr8	-	1258	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	-2	0	-2	0	multi-exon	FALSE	canonical	1	664	junction_3	477.58303524681	3286	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8398	False	NA	NA	False	NA	NA	NA	85751912	85744559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
53363	chr17	+	991	5	FSM	ENSMUSG00000023861.18	ENSMUST00000124023.8	555	5	-51	-385	5	-1	multi-exon	FALSE	canonical	3	18	junction_2	407.512576493045	4149	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTATTTGAGTGTGACTA	2160	False	NA	NA	False	NA	NA	NA	8502632	8516488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_8502794_8512246_8512328_8515366_8515464_8515655_8515789_8515969
53366	chr17	+	3753	3	Antisense	novelGene_ENSMUSG00000035051.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4	15	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACGTGGCCTTGGGCTTG	NA	False	NA	NA	False	NA	NA	NA	80540191	80553790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_80540464_80549334_80549558_80550532
53368	chr1	-	1253	3	NNC	ENSMUSG00000059498.14	novel	1298	3	NA	NA	-21	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	75.5	12	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGGGCTAAGGATCTCCT	NA	False	NA	NA	False	NA	NA	NA	170885644	170878751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_170879365_170881507_170881763_170885259
53369	chr19	-	2200	3	FSM	ENSMUSG00000033033.11	ENSMUST00000035822.2	2458	3	-160	418	-160	-418	multi-exon	FALSE	canonical	2	8	junction_2	1	60	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATGCCTAGACAGGGTA	5169	False	NA	NA	False	NA	NA	NA	47126893	47120679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_47121613_47123787_47124505_47126343
53370	chr8	+	2293	13	NIC	ENSMUSG00000031479.10	novel	3574	14	NA	NA	30	-35	intron_retention	FALSE	canonical	3	316	junction_4	35.3317609713036	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCTCAGTATAATATAAAA	NA	False	NA	NA	False	NA	NA	NA	22682854	22708613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
53371	chr11	-	1371	11	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	427.399625643261	1	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190878	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119186266_119186362_119186892_119186960_119188630_119188704_119190653
53372	chr1	-	1421	8	NIC	ENSMUSG00000026000.17	novel	4461	9	NA	NA	-6	-14	intron_retention	FALSE	canonical	2	4	junction_5	186.344096898666	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTACTTTGAAGTGGTC	NA	False	NA	NA	False	NA	NA	NA	67077999	67042547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67060016_67060225_67073282_67073401_67077653
53373	chr15	+	3239	12	FSM	ENSMUSG00000022265.8	ENSMUST00000022875.7	3498	12	251	8	251	-8	multi-exon	FALSE	canonical	3	63	junction_1	12.2109556553338	87	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAATGTGTGGCTATT	164	False	NA	NA	False	NA	NA	NA	27467013	27594987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_27467186_27544336_27544554_27553774_27553894_27557249_27557334_27562809_27562981_27564987_27565123_27567600_27567694_27571644_27571741_27590428_27590559_27591003_27591128_27591522_27591623_27593189
53375	chr2	-	1412	3	NIC	ENSMUSG00000009549.15	novel	798	5	NA	NA	-18	0	intron_retention	FALSE	canonical	3	1463	junction_1	17	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGTTTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	118310147	118306330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_118307341_118309401_118309515_118309858
53376	chr13	+	1747	9	NNC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	-292	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.5690474987854	5	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTTTCTGCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	65426335	65452030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_65426657_65426743_65426913_65427074_65427155_65428075_65428203_65432734_65432831_65439780_65440120_65442209_65442299_65443413_65443541_65451631
53377	chr19	-	3520	24	NNC	ENSMUSG00000051984.14	novel	3548	25	NA	NA	9601	1039	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	5.35683228913441	4	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCACTCCGTCTCCTCTG	NA	False	NA	NA	False	NA	NA	NA	44524685	44504356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44504487_44505624_44505928_44506078_44506151_44506582_44506700_44506956_44507104_44507339_44507399_44507611_44507927_44508861_44509022_44511443_44511606_44512098_44512273_44512867_44513014_44513559_44513687_44513914_44514094_44514654_44514755_44515043_44515143_44515436_44515512_44517104_44517336_44520119_44520210_44520732_44520895_44521032_44521133_44522679_44522823_44523126_44523271_44524143_44524240_44524496
53378	chr14	-	3094	16	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	0	-13	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	57.8442352836958	1	151	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACAAACTGTCATGAAAA	NA	False	NA	NA	False	NA	NA	NA	123215706	123156402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123200709_123200798_123209151_123209369_123210581_123210698_123215579
53379	chr5	+	1465	11	NNC	ENSMUSG00000029621.15	novel	1685	11	NA	NA	4	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	114.353355875549	1	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGCTAAAAAAAATTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	145020697	145045532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145032963_145033032_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
53380	chr11	-	2852	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	31	32	31	-32	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	1	130	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCTCCTGCTGCAATAAAA	5038	False	NA	NA	False	NA	NA	NA	63970261	63853484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
53381	chr17	+	2140	6	Antisense	novelGene_ENSMUSG00000064308.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	158	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCGCATCAGCTCCTCCA	2184	False	NA	NA	False	NA	NA	NA	37278258	37292104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_37279531_37280100_37280210_37280331_37280608_37281211_37281462_37281732_37281893_37292031
53382	chr14	+	1501	4	NNC	ENSMUSG00000005148.9	novel	3352	4	NA	NA	2851	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1706.06493298337	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGTGGTGCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	99539440	99552467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99539691_99540853_99540914_99550586_99550874_99551563
53383	chr2	+	1496	1	NIC	ENSMUSG00000027203.16	novel	1020	7	NA	NA	-183	184	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACATTCAGATAGCTGTC	NA	False	NA	NA	False	NA	NA	NA	125089636	125091132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_125089600_125091100
53385	chr7	+	3354	5	FSM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	8	149	8	-149	multi-exon	FALSE	canonical	3	36	junction_1	11.4127122105133	254	136	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGGACTGAGTGAGTGG	3335	False	NA	NA	False	NA	NA	NA	27560017	27580101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27560182_27561961_27562015_27562813_27562941_27564994_27565094_27577190
53386	chr16	+	1555	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	74	-660	74	660	mono-exon	FALSE	NA	NA	NA	NA	NA	1	82	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATCTACCAA	NA	False	NA	NA	False	NA	NA	NA	24348217	24349772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348200_24349800
53387	chr11	+	1880	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	53	17	15	-17	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	1	77	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCATGTTTTTGAATAC	NA	False	NA	NA	False	NA	NA	NA	68936530	68942473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
53388	chr17	+	1305	6	NNC	ENSMUSG00000023827.9	novel	799	5	NA	NA	-31634	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	112.817374548427	5	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTGTGGCAAGTGTTTA	5742	False	NA	NA	False	NA	NA	NA	12402377	12438527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_12402448_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432440_12437876
53390	chr3	-	512	1	Intergenic	novelGene_3152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTATAAAAGGATGTAGATG	NA	False	NA	NA	False	NA	NA	NA	90417838	90417326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_90417300_90417800
53391	chr11	-	1304	4	NNC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	125.158566093842	600	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGTGCCTTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	80032977	80027506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_80028120_80028735_80028894_80030691_80031150_80032902
53393	chr8	-	1209	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	-10	2	7	-2	multi-exon	FALSE	canonical	3	173	junction_8	16.1157058899497	1042	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTCTTAACAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	23143444	23118143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
53394	chr19	-	1477	10	FSM	ENSMUSG00000024799.17	ENSMUST00000025713.12	1471	10	-8	2	0	-1	multi-exon	FALSE	canonical	3	192	junction_3	30.8704981223334	729	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTTTTCTTCTAT	9953	False	NA	NA	False	NA	NA	NA	6117880	6112852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
53395	chr10	+	438	1	Antisense	novelGene_ENSMUSG00000069682.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCGATCTTCGGGGCCAA	NA	False	NA	NA	False	NA	NA	NA	29574747	29575185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_29574700_29575200
53396	chr8	-	2899	2	FSM	ENSMUSG00000055707.14	ENSMUST00000166976.3	2734	2	18	-183	0	-3	multi-exon	FALSE	canonical	3	8	junction_1	0	46	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCAGTGTGACCTGTGC	NA	False	NA	NA	False	NA	NA	NA	70929600	70902871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70905670_70929499
53397	chr7	-	751	5	NNC	ENSMUSG00000050708.17	novel	503	5	NA	NA	44	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	29659.4391593975	2	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGCAGCTGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	45109219	45107376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107436_45107554_45107708_45107958_45108085_45108507_45108655_45108953
53398	chr4	-	1360	8	NNC	ENSMUSG00000028776.15	novel	1847	11	NA	NA	1140	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	91.9547359812846	13	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	130062137	130059396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062060
53399	chr5	-	1439	5	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	119	43	intron_retention	FALSE	non_canonical	0	0	junction_1	2040.60303586954	1	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTGAGGCAGCCAGGGC	9941	False	NA	NA	False	NA	NA	NA	142891457	142888945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889389_142889821_142890004_142890098_142890538_142890991_142891232_142891322
53400	chr11	-	1153	10	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	26	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6126.65936000854	2	61	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATAAACTCAGTATTTT	NA	False	NA	NA	False	NA	NA	NA	33113046	33102538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106121_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
53403	chr14	+	1696	1	FSM	ENSMUSG00000010406.13	ENSMUST00000199153.2	856	1	3	-843	2	843	mono-exon	FALSE	NA	NA	NA	NA	NA	15	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAGCTCAAAGGGAGA	NA	False	NA	NA	False	NA	NA	NA	54664381	54666077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_54664400_54666100
53404	chr14	+	504	1	NIC	ENSMUSG00000010406.13	novel	418	5	NA	NA	1570	-622	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACACACACCAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	54666077	54666581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_54666100_54666600
53406	chr3	-	2208	4	NNC	ENSMUSG00000027808.9	novel	4611	3	NA	NA	110	-2158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	417.550795313177	42	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATGATTTTGCAGAGT	NA	False	NA	NA	False	NA	NA	NA	58433203	58429395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_58431290_58432503_58432580_58432830_58432960_58433094
53409	chr10	+	1128	8	Antisense	novelGene_ENSMUSG00000038510.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGGGAAGCCGCCGCG	NA	False	NA	NA	False	NA	NA	NA	40099489	40123009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_40099917_40101292_40101437_40103553_40103658_40109103_40109204_40110817_40110893_40112116_40112200_40120579_40120716_40122950
53410	chr5	-	1360	5	NIC	ENSMUSG00000029507.17	novel	1510	6	NA	NA	3	-9	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	246.215733656483	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGAATTATTCTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	110928478	110921542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110927552_110927764_110928427
53411	chr18	+	3138	9	Antisense	novelGene_ENSMUSG00000024268.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	100	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGCCAGGGGAAGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	25610692	25638102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_25612774_25619853_25620027_25624142_25624281_25630520_25630588_25634257_25634411_25635992_25636138_25637195_25637339_25637544_25637628_25637947
53412	chr9	+	1671	5	ISM	ENSMUSG00000035443.11	ENSMUST00000213683.2	1107	7	-7	2	3	0	intron_retention	FALSE	canonical	3	591	junction_2	21.9146070008111	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	26911008	26918630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647
53413	chr4	+	2525	16	NNC	ENSMUSG00000011257.20	novel	3050	15	NA	NA	-39	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	142.159378476726	2	119	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGGAAATAAAATCTCCAT	NA	False	NA	-66	True	NA	NA	NA	123176578	123192592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_123176858_123177353_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189067_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191845_123192305
53414	chrX	-	4101	4	Fusion	ENSMUSG00000106388.2_ENSMUSG00000081195.3	novel	322	3	NA	NA	0	96	multi-exon	FALSE	canonical	0	0	junction_3	5.8878405775519	14	70	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTTTATTTGCCTCAGGT	NA	False	NA	NA	False	NA	NA	NA	36865084	36857926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_36858142_36859175_36859222_36861051_36864803_36864995
53415	chrX	+	1358	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	-54	-236	-54	236	mono-exon	FALSE	NA	NA	NA	NA	NA	1	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTAGTGTCAATTAGAT	NA	False	NA	NA	False	NA	NA	NA	79500293	79501651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_79500300_79501700
53416	chrX	+	2019	9	NNC	ENSMUSG00000043384.16	novel	5611	10	NA	NA	9	-3583	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	60.4643490000513	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCCCAATAGTAGGTCCT	NA	False	NA	NA	False	NA	NA	NA	134643492	134700632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134643728_134645247_134645325_134649404_134649532_134652693_134652767_134698301_134698379_134698536_134698614_134698771_134698899_134699132_134699223_134699496
53417	chr9	-	2835	19	ISM	ENSMUSG00000043067.16	ENSMUST00000142064.8	3489	23	27775	13	12549	12	3prime_fragment	FALSE	canonical	3	87	junction_1	53.5867820444234	115	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACATGAAAAATGTGCCA	NA	False	NA	NA	False	NA	NA	NA	24386661	24323086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_24324283_24325533_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872_24373931_24385069_24385164_24386628
53419	chr12	-	1589	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	79.4107430748666	10	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	7680	False	NA	NA	False	NA	NA	NA	110807353	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807260
53420	chr9	+	2501	5	FSM	ENSMUSG00000032567.17	ENSMUST00000035181.10	2755	5	-37	291	-37	0	multi-exon	FALSE	canonical	3	44	junction_3	8.45576726264388	43	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTTATTTATATG	NA	False	NA	NA	False	NA	NA	NA	105272553	105282666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_105272865_105273743_105275058_105278674_105278886_105280594_105280791_105282197
53421	chr3	-	2226	16	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	20	-2549	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	95.1025177841727	13	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCATTTCAACCTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97517488	97480899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_97481429_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
53423	chr8	-	1559	1	Intergenic	novelGene_1601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTTTAAATACCACCTCAA	NA	False	NA	NA	False	NA	NA	NA	23170798	23169239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_23169200_23170800
53426	chr19	-	1178	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	87	junction_5	406.53826145234	26	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	5877	False	NA	NA	False	NA	NA	NA	46327044	46318984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46326958
53427	chr11	+	2143	1	Intergenic	novelGene_2468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTTTATAATAAGAAATTA	NA	False	NA	NA	False	NA	NA	NA	96978805	96980948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_96978800_96980900
53431	chr14	+	2086	3	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	3407	17	2944	-17	3prime_fragment	FALSE	canonical	3	3503	junction_2	111	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGCCTAAAAGATGTATG	NA	False	NA	NA	False	NA	NA	NA	99539533	99552455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_99539691_99540853_99540914_99550586
53432	chr7	+	1806	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	30	45	30	-44	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	18	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGCAGAATGGAATTTG	NA	False	NA	NA	False	NA	NA	NA	34611833	34744088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
53434	chr14	+	780	5	ISM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	6474	1041	-316	-5	3prime_fragment	FALSE	canonical	3	521	junction_4	22.6163657557973	1	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTAAACCCCTGTCTTGT	1170	False	NA	NA	False	NA	NA	NA	54604771	54606089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
53435	chr18	-	3207	14	FSM	ENSMUSG00000052026.9	ENSMUST00000025520.10	3366	14	150	9	134	-9	multi-exon	FALSE	canonical	2	6	junction_10	5.15671561910596	63	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCGTCATCTTTACCTGA	NA	False	NA	NA	False	NA	NA	NA	61147144	61128460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61129904_61133493_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135511_61136312_61136438_61136558_61136663_61137460_61137596_61138783_61138923_61140446_61140682_61140787_61140920_61142493_61142678_61147048
53436	chr1	+	1510	8	ISM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	34	30015	20	1301	5prime_fragment	FALSE	canonical	3	2037	junction_4	257.933229771598	5	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACCAATCCTGAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	185095274	185112381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741
53437	chrX	+	3328	23	FSM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	-7	519	-7	-519	multi-exon	FALSE	canonical	3	98	junction_1	138.801667470395	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTCTGTGTTGCAGACGG	NA	False	NA	NA	False	NA	NA	NA	100683658	100726027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
53438	chr7	+	2585	3	NIC	ENSMUSG00000070828.11	novel	1829	4	NA	NA	1	102	intron_retention	FALSE	canonical	3	28	junction_1	0.5	35	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTGAGTTGCTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	11131842	11136347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_11133051_11134886_11135047_11135130
53439	chr13	-	1964	10	Antisense	novelGene_ENSMUSG00000021431.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAACTGCTGGGCGCGCA	NA	False	NA	NA	False	NA	NA	NA	38411023	38388920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_38389103_38393850_38393965_38394180_38394244_38395042_38395118_38398580_38399376_38400298_38400487_38401346_38401470_38404661_38404753_38405210_38405368_38410847
53440	chr11	-	852	1	Intergenic	novelGene_2204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTCCTATAATCCCAGG	NA	False	NA	NA	False	NA	NA	NA	5478606	5477754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_5477800_5478600
53441	chr11	-	577	1	Intergenic	novelGene_2203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCCCGGGCAGAATACACA	1262	False	NA	NA	False	NA	NA	NA	5477092	5476515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_5476500_5477100
53442	chr12	+	1250	5	Antisense	novelGene_ENSMUSG00000044573.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	264	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGACCCAACCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	30944965	30961509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_30945952_30946113_30946223_30947745_30947806_30955067_30955137_30961483
53443	chr2	+	2702	10	NIC	ENSMUSG00000063145.11	novel	1468	12	NA	NA	1	-1	intron_retention	FALSE	canonical	3	79	junction_3	8.95392871906924	4	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAATGTTTTGAAAGTATT	NA	False	NA	NA	False	NA	NA	NA	69477574	69497914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
53445	chr5	+	5267	16	NNC	ENSMUSG00000029101.17	novel	5472	17	NA	NA	32	-24	intron_retention	TRUE	canonical	0	0	junction_3	6.84949308748871	21	74	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGAGAAATAAACTCTAGA	8666	False	NA	NA	False	NA	NA	NA	35106823	35190762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35106869_35122116_35124100_35132560_35132678_35176657_35176857_35177657_35177751_35178459_35178604_35179935_35180116_35180372_35180527_35181620_35181698_35183192_35183388_35183671_35183746_35184206_35184334_35185879_35185977_35187354_35187435_35187811_35187966_35189214
53446	chr18	-	1321	5	FSM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	82	0	82	0	multi-exon	FALSE	canonical	3	373	junction_3	12.8354976529934	1608	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	NA	False	NA	NA	NA	53551105	53539403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
53447	chr10	-	879	6	Antisense	novelGene_ENSMUSG00000075706.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAAGCGGCTCAGACGGC	NA	False	NA	NA	False	NA	NA	NA	79892273	79889495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79889548_79890345_79890451_79890539_79890675_79890797_79890954_79891756_79891932_79892017
53450	chr1	+	1234	8	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	21	445	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	194.488129851313	7	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCGTCTATTCCCTGCC	5634	False	NA	NA	False	NA	NA	NA	34478952	34484040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483548
53452	chr10	+	1131	8	FSM	ENSMUSG00000023175.16	ENSMUST00000178383.8	921	8	-64	-146	-2	0	multi-exon	FALSE	canonical	3	93	junction_5	2288.21761131556	53	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	NA	False	NA	NA	NA	79540339	79547803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546559_79546673_79546755_79547089_79547115_79547327
53453	chr16	-	2151	7	FSM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	90	6	90	-6	multi-exon	TRUE	canonical	3	103	junction_5	11.6010057035299	164	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGATGCTGTAGTTATTG	NA	False	NA	NA	False	NA	NA	NA	4377628	4362530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4377291
53454	chr15	-	1755	6	NIC	ENSMUSG00000023755.11	novel	1604	8	NA	NA	-12	0	intron_retention	FALSE	canonical	3	176	junction_1	15.8996855314814	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	NA	False	NA	NA	NA	98779227	98775658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
53455	chr4	-	2215	12	FSM	ENSMUSG00000028538.13	ENSMUST00000106410.8	2225	12	9	1	9	-1	multi-exon	FALSE	canonical	3	30	junction_11	18.1899981599189	78	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGGCCTCCTGTTGTTTT	1871	False	NA	NA	False	NA	NA	NA	117992102	117789355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991930
53457	chr9	+	1463	10	ISM	ENSMUSG00000037784.15	ENSMUST00000112884.2	3791	16	2484	9430	2484	6048	internal_fragment	FALSE	canonical	3	17	junction_1	2.82842712474619	1	51	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACCCTGGAAGAGAAGCT	NA	False	NA	NA	False	NA	NA	NA	99519397	99541786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_99519976_99521866_99521952_99523786_99523906_99524585_99524748_99529139_99529269_99531607_99531671_99532966_99533108_99536912_99536944_99537630_99537685_99541685
53461	chr2	+	1188	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	0	457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	496.400599874291	1	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174852033	174859862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174852115_174858430_174858558_174858749_174858864_174858996
53462	chr10	-	966	7	FSM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	121	3	83	3	multi-exon	FALSE	canonical	3	1217	junction_2	78.0243907733701	906	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGTTTACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	33895499	33872553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_33872845_33877132_33877196_33877653_33877787_33878419_33878564_33884988_33885120_33888067_33888134_33895361
53463	chr1	+	1804	14	NNC	ENSMUSG00000033793.13	novel	2049	14	NA	NA	59	30	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	149.031984970941	3	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAAATTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	5153445	5232672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203464_5206034_5206161_5213972_5214075_5220170_5220285_5232327
53464	chr18	+	1455	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	5	1196	5	-1196	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAATATATTGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	52598769	52623807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
53465	chr7	+	1774	9	FSM	ENSMUSG00000030815.12	ENSMUST00000121004.3	1840	9	61	5	7	0	multi-exon	FALSE	canonical	3	46	junction_2	32.8954309137303	205	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	NA	False	NA	NA	NA	127172761	127182472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
53466	chr19	-	2591	26	NNC	ENSMUSG00000025159.9	novel	2810	26	NA	NA	1	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	82.0631366692744	1	114	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTGGTCCAAGGTTTC	NA	False	NA	NA	False	NA	NA	NA	41969574	41935391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942359_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951311_41951405_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954692_41954754_41958141_41958191_41969437
53467	chr4	+	719	7	Antisense	novelGene_ENSMUSG00000029048.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTCGGCTCCGGATCCGG	NA	False	NA	NA	False	NA	NA	NA	155159349	155170737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_155159486_155160045_155160181_155161167_155161248_155162950_155163050_155165254_155165363_155167125_155167208_155170658
53468	chr9	-	1836	4	ISM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	124149	4709	-2271	2770	internal_fragment	FALSE	canonical	2	8	junction_1	1.69967317119759	2	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCACCACCACCACCACT	NA	False	NA	NA	False	NA	NA	NA	65610697	65604381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_65604531_65604775_65604952_65608103_65608471_65609553
53469	chr19	-	1103	2	Intergenic	novelGene_1260	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCTGTGAACTAACCTGT	5307	False	NA	NA	False	NA	NA	NA	40995179	40993808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_40994553_40994820
53471	chr11	+	788	1	FSM	ENSMUSG00000107677.3	ENSMUST00000203731.2	1011	1	840	-617	840	-440	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTATGACTTTGTAATAA	8857	False	NA	NA	False	NA	NA	NA	58649269	58650057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58649300_58650100
53472	chr2	-	1138	9	FSM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	-92	14	-9	0	multi-exon	FALSE	canonical	3	78	junction_1	1503.84357564209	10	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9495	False	NA	NA	False	NA	NA	NA	10085330	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
53473	chr5	+	1048	10	NNC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	10	-1665	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	435.84582164673	4	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTCTGTAGCTGTATGTA	NA	False	NA	NA	False	NA	NA	NA	111478638	111534560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111478708_111486163_111486295_111494348_111494449_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
53474	chr14	-	3039	3	NNC	ENSMUSG00000033405.5	novel	3579	5	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	9	38	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTCAGAGACTTAATTG	NA	False	NA	NA	False	NA	NA	NA	73762676	73756316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_73759115_73760870_73760935_73762499
53475	chr1	+	1383	11	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	7	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	876.376888102373	1	46	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATATTTTCTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	59724150	59750644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731893_59735138_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59748229_59748296_59749653_59749812_59750429
53476	chr14	+	1191	9	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	25	5435	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_8	317.824415951638	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTAAACCACTTACCCC	NA	False	NA	NA	False	NA	NA	NA	62569541	62615876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_62569626_62584016_62584092_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62615332
53477	chr5	-	2711	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	107	1468	-75	29	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	6	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGAACCAAGACTTGGGT	6504	False	NA	NA	False	NA	NA	NA	123859000	123837832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
53478	chr2	-	1705	14	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-32	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	378.975713886756	1	35	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_3490107_3490734_3490806_3491973_3492148_3492555_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503582_3503769_3503823_3512051_3512135_3512210_3512292_3513670
53479	chr13	-	2962	3	FSM	ENSMUSG00000015937.16	ENSMUST00000137835.8	728	3	-1691	-543	-1691	-1	multi-exon	FALSE	canonical	3	1103	junction_1	109.5	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGACTGGCCGTGTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	56234025	56221435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_56222206_56230932_56231108_56232008
53481	chr19	-	1198	9	NNC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	105.096904688007	46	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCCTGTGTTTTTCTTC	-1	True	NA	NA	False	NA	NA	NA	6117852	6112855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116673_6116997_6117053_6117698
53482	chr2	-	1427	9	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	5503	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	107.87145127419	17	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCATTTCCTGTCCTGAT	3229	False	NA	NA	False	NA	NA	NA	155976226	155965574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970480_155970516_155973572_155973708_155974552_155974647_155976098
53484	chr9	-	2921	2	FSM	ENSMUSG00000055069.4	ENSMUST00000068449.4	2971	2	17	33	17	-33	multi-exon	FALSE	canonical	3	13	junction_1	0	24	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGATTTGTGTATTTTT	NA	False	NA	NA	False	NA	NA	NA	53617515	53595442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_53598037_53617188
53486	chr17	-	1517	12	NIC	ENSMUSG00000002625.11	novel	2102	14	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	35	junction_3	129.172381460711	1	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGACCAAGATCTGAC	NA	False	NA	NA	False	NA	NA	NA	32569550	32551809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32551891_32551976_32552119_32553561_32553671_32554084_32554145_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
53487	chr14	+	3867	12	NNC	ENSMUSG00000115823.2	novel	538	2	NA	NA	-1074	32381	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	75	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCTCAGACTTCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	47778362	47814055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47780603_47783086_47783171_47783247_47783341_47784699_47784818_47786378_47786606_47788704_47788942_47792016_47792099_47796630_47796676_47798076_47798143_47798984_47799149_47805645_47806094_47813992
53488	chr5	+	3173	15	NNC	ENSMUSG00000039623.14	novel	3689	17	NA	NA	-11	-13	intron_retention	FALSE	canonical	0	0	junction_4	25.6260390531003	4	90	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTATTTATGCTGAGCAG	8679	False	NA	NA	False	NA	NA	NA	142449787	142463544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453780_142453886_142454618_142454788_142455761_142455903_142456044_142456312_142457957_142458140_142459662_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
53489	chr19	-	760	6	NIC	ENSMUSG00000025092.8	novel	1510	7	NA	NA	-11	-647	combination_of_known_splicesites	TRUE	canonical	0	0	junction_5	4.92341345003647	3	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTTCGGCTGCACCAGA	NA	False	NA	NA	False	NA	NA	NA	58849427	58797976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_58798054_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58849278
53490	chr15	-	1687	3	NIC	ENSMUSG00000003355.8	novel	1314	4	NA	NA	4	-3	intron_retention	FALSE	canonical	3	673	junction_2	22.5	21	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGACGTTGTATTTTTC	NA	False	NA	NA	False	NA	NA	NA	98626029	98622253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98622484_98624364_98625630_98625837
53491	chr14	+	3958	13	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	26762	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17.3773479628573	5	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTAAAAACACCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	26863617	27125856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26863950_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
53492	chr2	-	2193	5	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	50	-14	intron_retention	TRUE	non_canonical	0	0	junction_1	102.153071417359	14	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGAAATAATAATGCAGA	NA	False	NA	NA	False	NA	NA	NA	106804692	106792885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_106792968_106794541_106795992_106797444_106797573_106799416_106799904_106804646
53493	chr19	-	695	4	NNC	ENSMUSG00000025208.10	novel	1398	3	NA	NA	0	384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	230.904020464492	60	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACATGAAAGAGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	44994881	44993866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44993948_44994051_44994380_44994501_44994609_44994702
53494	chr7	+	1562	2	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	121	-112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATATATATATATTTTAA	2911	False	NA	NA	False	NA	NA	NA	3341739	3347726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3341816_3346240
53495	chr1	-	1736	8	NNC	ENSMUSG00000003051.14	novel	1901	9	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	212.440051567975	1	76	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGCTCTCTGTGTACT	NA	False	NA	NA	False	NA	NA	NA	135186178	135181311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184568_135184613_135184742_135184965_135185352_135185521_135186086
53496	chr2	-	2027	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102767.8	2057	5	15	15	15	-12	multi-exon	FALSE	canonical	3	26	junction_1	2.77263412660235	100	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACAGAAAATTAAACTGTG	NA	False	NA	NA	False	NA	NA	NA	51825004	51814474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824843
53497	chr9	-	1614	6	ISM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	9177	18	-963	-13	3prime_fragment	FALSE	canonical	3	1060	junction_5	60.7242949732642	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTCTTAATGCAACCACC	NA	False	NA	NA	False	NA	NA	NA	54632604	54624460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609
53498	chr11	+	1680	2	NIC	ENSMUSG00000018286.7	novel	798	6	NA	NA	9	-5	intron_retention	FALSE	canonical	1	47	junction_1	0	13	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCATTGTTGTTCTGCC	NA	False	NA	NA	False	NA	NA	NA	70416201	70418679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70416322_70417119
53500	chr6	-	859	1	ISM	ENSMUSG00000033720.13	ENSMUST00000045846.12	3656	14	119511	4	51022	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACAGGTGTGGCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	85190893	85190034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_85190000_85190900
53501	chr5	-	1205	5	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3400.04301443379	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6845	False	NA	NA	False	NA	NA	NA	148989769	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985724_148986536_148986712_148987130_148987251_148987397_148987562_148989709
53503	chrX	-	1907	6	FSM	ENSMUSG00000025269.17	ENSMUST00000140207.8	795	6	-70	-1042	8	0	multi-exon	FALSE	canonical	1	1	junction_5	34.2963554915096	87	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCATGTTGAGTGGATATT	NA	False	NA	NA	False	NA	NA	NA	149371137	149354502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370888
53504	chr19	+	329	2	Intergenic	novelGene_1236	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAATTAATCACCGAAAAA	5837	False	NA	NA	False	NA	NA	NA	25010495	25010932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_25010503_25010610
53505	chr7	-	3834	6	NNC	ENSMUSG00000059975.16	novel	3711	5	NA	NA	171	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	23.1913777081052	1	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACAGTAGTGGATATTG	NA	False	NA	NA	False	NA	NA	NA	29653341	29632222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29635469_29637020_29637121_29637366_29637494_29642915_29643038_29651138_29651316_29653279
53506	chr9	+	2964	8	NNC	ENSMUSG00000032536.13	novel	4043	13	NA	NA	-7548	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	88.5449269107646	32	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAAAACAACTTTTAGGT	NA	False	NA	NA	False	NA	NA	NA	121275813	121291665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121290911_121291098
53507	chr11	-	3007	15	FSM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	21	-5	-19	5	multi-exon	FALSE	canonical	2	10	junction_14	6.65168384389875	39	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTACCTTTCCACTTTATT	9430	False	NA	NA	False	NA	NA	NA	102992463	102961124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012_102971242_102971329_102971492_102992205
53508	chr2	-	2570	1	FSM	ENSMUSG00000075273.5	ENSMUST00000099996.5	2737	1	145	22	145	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	17	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAATGAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	75768784	75766214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75766200_75768800
53509	chr14	-	4696	17	ISM	ENSMUSG00000042156.17	ENSMUST00000047208.12	4476	20	8746	744	-671	-5	3prime_fragment	TRUE	canonical	3	31	junction_9	5.56460634277035	15	70	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACACACTGCGACTGTGG	NA	False	NA	NA	False	NA	NA	NA	119151833	119113675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_119114675_119116755_119116925_119118421_119118553_119120776_119120980_119123017_119123072_119123909_119124040_119124479_119124643_119126667_119126805_119129181_119129245_119133262_119133320_119137397_119137455_119138912_119138962_119139426_119139568_119144306_119144370_119146845_119146984_119148753_119148916_119149853
53510	chr9	-	1479	5	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	3	-1067	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	350.365077454931	96	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGACTCAGATGATTCTG	4	True	NA	NA	False	NA	NA	NA	4309464	4296031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693_4308920_4309253
53511	chr2	-	1256	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-22	-78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGACTTTGGTCTGGTTA	NA	False	NA	NA	False	NA	NA	NA	152185974	152179419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179680_152180393_152180608_152181634_152181928_152184956_152185248_152185776
53512	chr14	-	3035	3	NNC	ENSMUSG00000021752.15	novel	3052	3	NA	NA	380	-1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	103.5	184	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAAGGTTGTATTTAT	NA	False	NA	NA	False	NA	NA	NA	14255253	14246210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_14247587_14249552_14249623_14253664
53513	chr12	+	2242	14	NNC	ENSMUSG00000021013.17	novel	2272	14	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	8.08095137641163	10	37	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTTCACTTTTCACAAG	NA	False	NA	NA	False	NA	NA	NA	98886832	98949495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_98887043_98908476_98908598_98909561_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942386_98942685_98942800_98946060_98946145_98948716
53514	chr10	-	2231	7	ISM	ENSMUSG00000025409.15	ENSMUST00000119078.8	4287	13	3894	0	-753	0	3prime_fragment	FALSE	canonical	3	53	junction_4	29.1819007834194	291	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGACTCTGTACTCATT	144	False	NA	NA	False	NA	NA	NA	127120993	127117824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127118777_127118893_127118958_127119260_127119314_127119394_127119809_127119911_127120082_127120203_127120355_127120566
53515	chrX	+	1591	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	-32	5	-17	-5	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	4	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATAGTTTCAGACTTGT	NA	False	NA	NA	False	NA	NA	NA	72235795	72246521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
53516	chr19	-	2009	2	NNC	ENSMUSG00000054237.7	novel	1010	9	NA	NA	14807	-2728	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAAAGGTAACTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	38197779	38195718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_38196579_38196630
53519	chr2	-	1828	15	NNC	ENSMUSG00000089917.8	novel	1849	15	NA	NA	530	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	47.4279259852811	5	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGATCGTGTGGCAGA	5459	False	NA	NA	False	NA	NA	NA	181222889	181210949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214853_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181220339_181220453_181222858
53520	chr3	-	2301	7	Fusion	ENSMUSG00000058135.13_ENSMUSG00000004038.10	novel	1311	8	NA	NA	9	-7	intron_retention	TRUE	non_canonical	0	0	junction_6	116.982429829821	16	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTTGTGTCTTTTT	6759	False	NA	NA	False	NA	NA	NA	107925113	107871018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_107871613_107873402_107873514_107873594_107874992_107875451_107875517_107876078_107876155_107876420_107876461_107925095
53521	chr7	-	1417	11	Antisense	novelGene_ENSMUSG00000030589.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCATGGGAGGTGGGGGA	NA	False	NA	NA	False	NA	NA	NA	28851046	28839953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_28840066_28844556_28844672_28845230_28845508_28847790_28847870_28847964_28848072_28848196_28848317_28848410_28848557_28849223_28849260_28849345_28849480_28849601_28849716_28850869
53523	chr5	+	2522	8	ISM	ENSMUSG00000029550.12	ENSMUST00000031530.9	3204	11	71120	0	7890	0	3prime_fragment	FALSE	canonical	3	665	junction_4	37.8935135260237	153	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTCCTGACTTCACT	NA	False	NA	NA	False	NA	NA	NA	115220315	115236849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115220400_115221483_115221563_115222911_115223025_115226348_115226456_115226881_115227046_115233109_115233310_115233904_115234015_115235184
53524	chr12	+	1503	3	ISM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	17	-3	-9	0	intron_retention	FALSE	canonical	3	219	junction_2	50	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	84820041	84821862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_84820146_84820348_84820452_84820566
53525	chr8	+	2417	3	NNC	ENSMUSG00000033009.16	novel	718	7	NA	NA	-8	4363	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	80	34	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAAGGCATAATGCACCT	NA	False	NA	NA	False	NA	NA	NA	94763879	94770443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94764071_94765592_94765739_94768363
53526	chr14	+	1899	12	NNC	ENSMUSG00000022110.14	novel	1545	12	NA	NA	-1	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	477.554808416084	56	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGTTTCCTAATGTAAT	NA	False	NA	NA	False	NA	NA	NA	73790204	73833565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813_73832905_73833117
53528	chr9	+	2341	15	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	102	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAAGTGTGCGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	61832254	61854045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61832426_61832811_61832968_61833639_61833803_61834319_61834450_61834630_61834750_61834835_61834926_61836948_61837048_61839081_61839211_61839364_61839472_61842665_61842837_61843951_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
53529	chr9	+	741	1	Genic_Genomic	ENSMUSG00000039285.13	novel	NA	NA	NA	NA	1085	397	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCATGCTCATGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	117889208	117889949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_117889200_117889900
53530	chr8	-	2372	10	FSM	ENSMUSG00000035824.8	ENSMUST00000050211.7	2406	10	22	12	-3	-1	multi-exon	FALSE	canonical	3	48	junction_4	11.1055541659718	74	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTAAATTCATTTTCAT	NA	False	NA	NA	False	NA	NA	NA	104975168	104953328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104963403_104963478_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
53531	chr11	+	2289	1	NIC	ENSMUSG00000085860.2	novel	612	4	NA	NA	5602	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	16	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATATTTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	97511409	97513698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97511400_97513700
53532	chr18	+	1952	19	NNC	ENSMUSG00000024474.8	novel	1955	20	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	250.179373921597	1	84	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	NA	False	NA	NA	NA	36877741	36890688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886733_36887605_36887692_36888491_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890467
53533	chr5	+	1329	10	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	565.902840328053	2	52	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	8136	False	NA	NA	False	NA	NA	NA	145051128	145064879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060420_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
53534	chr5	-	2791	2	Intergenic	novelGene_789	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	142	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTCAAAGAGAGCGAGAGA	NA	False	NA	NA	False	NA	NA	NA	105962234	105880093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_105880236_105959585
53536	chr10	+	2851	14	NIC	ENSMUSG00000032763.12	novel	2233	15	NA	NA	2	-2	intron_retention	FALSE	canonical	3	132	junction_7	19.5108830198179	4	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGTGTATACTGGTT	5377	False	NA	NA	False	NA	NA	NA	78410311	78420332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_78411066_78412415_78412618_78412733_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
53537	chr17	-	1397	5	NNC	ENSMUSG00000077450.14	novel	6109	5	NA	NA	-25	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.069914007723	13	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATACACTTTGTAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	33979305	33965685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33966503_33967483_33967565_33967840_33968035_33968755_33968952_33979196
53538	chr4	+	3366	2	FSM	ENSMUSG00000053317.12	ENSMUST00000136685.2	723	2	-194	-2449	-10	-2	multi-exon	FALSE	canonical	3	2329	junction_1	0	22	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTTGCCTGTGCTTTA	33	False	NA	NA	False	NA	NA	NA	47474753	47483240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_47475010_47480130
53539	chr13	+	1340	9	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGGAGTCTGCCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	100916070	100923007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916296_100916530_100916637_100917278_100917423_100917663_100917903_100918132_100918291_100919971_100920156_100921981_100922048_100922311_100922412_100922889
53540	chr15	+	1815	5	Antisense	novelGene_ENSMUSG00000042632.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAGTCTCAGGTTAGACA	7391	False	NA	NA	False	NA	NA	NA	79173439	79188134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79173492_79173784_79173918_79181499_79181648_79183229_79183396_79186818
53541	chr1	-	1825	4	FSM	ENSMUSG00000079610.10	ENSMUST00000194894.4	664	4	28	-1189	16	-77	multi-exon	FALSE	canonical	3	25	junction_1	19.6015872373189	402	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGCCTTAAGTAGCCT	7042	False	NA	NA	False	NA	NA	NA	36586284	36577251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36578616_36580904_36581144_36581842_36581947_36586166
53542	chr12	+	1712	4	ISM	ENSMUSG00000036613.9	ENSMUST00000221574.2	753	5	1269	-368	1269	0	3prime_fragment	FALSE	canonical	3	237	junction_1	20.757863302587	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	9954	False	NA	NA	False	NA	NA	NA	28908579	28917490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_28909388_28912953_28913122_28914668_28914834_28916919
53543	chr17	+	1129	5	ISM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	3667	1276	-84	-13	3prime_fragment	FALSE	canonical	3	1763	junction_2	148.476429105767	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGTTTAACTTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	29255268	29261071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
53544	chr7	-	1833	2	NIC	ENSMUSG00000025484.10	novel	719	3	NA	NA	15	-21	intron_retention	FALSE	canonical	3	111	junction_1	0	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACGAGCTATGAAGTTCCG	NA	False	NA	NA	False	NA	NA	NA	140436215	140433327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140435079_140436133
53547	chr2	+	2605	12	ISM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	619	32	393	-32	3prime_fragment	FALSE	canonical	3	20	junction_8	6.24301262305069	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAATAATAAAGCCTCTA	NA	False	NA	NA	False	NA	NA	NA	84767626	84788821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
53548	chr4	+	1538	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232301.2	1538	4	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_2	0.471404520791032	100	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	132035986	132038335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132037215_132037461_132037527_132037761_132037816_132038144
53549	chr19	-	2506	10	FSM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	20	149	-8	-1	multi-exon	FALSE	canonical	3	124	junction_7	16.3026923475166	88	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTGCCTGCAGGGG	1007	False	NA	NA	False	NA	NA	NA	6127241	6118020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
53550	chr17	-	1270	5	ISM	ENSMUSG00000073406.11	ENSMUST00000173080.10	1138	6	141	-79	111	5	3prime_fragment	FALSE	canonical	3	116	junction_4	179.694706377233	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTTCCTGCATTGAGC	NA	False	NA	NA	False	NA	NA	NA	36394974	36391001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587
53551	chr16	-	2766	11	ISM	ENSMUSG00000022983.17	ENSMUST00000039280.9	4266	20	34144	-99	-3065	1	3prime_fragment	FALSE	canonical	3	105	junction_2	53.4438958160799	87	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACGTTAATGTGTGCTA	5196	False	NA	NA	False	NA	NA	NA	90047169	90025843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_90027133_90039414_90039607_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944
53552	chr2	-	1797	1	Intergenic	novelGene_2577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCCCTTAGGACCCCAC	9533	False	NA	NA	False	NA	NA	NA	20659778	20657981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_20658000_20659800
53553	chr7	+	1839	5	Antisense	novelGene_ENSMUSG00000070371.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAGGAAGGAAAGA	1587	False	NA	NA	False	NA	NA	NA	127531814	127534528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_127532282_127532532_127532665_127532738_127533007_127533312_127533800_127534043
53554	chr3	+	2464	5	ISM	ENSMUSG00000028152.11	ENSMUST00000121826.3	1114	8	33901	-1769	33901	0	3prime_fragment	FALSE	canonical	3	131	junction_1	19.0705925445435	92	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGATCACGTCGTCTTA	NA	False	NA	NA	False	NA	NA	NA	138600154	138610187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_138600280_138602549_138602676_138603873_138603922_138604027_138604145_138608139
53557	chr16	-	1736	17	NNC	ENSMUSG00000022844.9	novel	1809	17	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_16	132.890697567587	381	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	NA	False	NA	NA	NA	35311261	35217681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311189
53560	chr11	+	4041	4	ISM	ENSMUSG00000039741.16	ENSMUST00000118987.2	10712	27	50038	16	-3056	-16	3prime_fragment	FALSE	canonical	3	23	junction_1	6.54896090146283	21	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTATTGTACAGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	120177562	120183092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_120177596_120177749_120178931_120180133_120180371_120180502
53561	chr2	+	2253	6	NNC	ENSMUSG00000005804.15	novel	3484	5	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	68.1363339195763	2	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACGAAGGCTGGCGATTCT	8296	False	NA	NA	False	NA	NA	NA	122580449	122590016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_122580625_122580903_122581079_122584508_122584651_122586045_122586134_122587974_122588062_122588430
53562	chr5	-	1849	5	FSM	ENSMUSG00000001687.16	ENSMUST00000079324.14	2537	5	679	9	-319	-9	multi-exon	FALSE	canonical	3	361	junction_2	34.1641259217911	178	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTGTAGTGCATTTTGT	587	False	NA	NA	False	NA	NA	NA	148488793	148441453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762
53563	chr2	+	2056	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	10	14	-6	-1	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	1	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCTGGTGTCAGACTCT	NA	False	NA	NA	False	NA	NA	NA	28358087	28361176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
53565	chr17	-	2225	2	ISM	ENSMUSG00000117916.2	ENSMUST00000236498.2	2579	3	8525	-5	3118	5	3prime_fragment	FALSE	canonical	2	9	junction_1	0	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGACTTGGGTTTTTTT	9367	False	NA	NA	False	NA	NA	NA	27458515	27454043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27456112_27458358
53566	chr6	-	2386	14	FSM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	48	3	0	-2	multi-exon	TRUE	canonical	1	70	junction_10	46.9877234375763	60	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTGTGATCCTGTTTC	17	True	NA	NA	False	NA	NA	NA	29212248	29200438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067
53568	chr16	-	1169	4	NNC	ENSMUSG00000040681.17	novel	261	5	NA	NA	12	646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3210.85391895815	1	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	NA	False	NA	NA	NA	95928917	95922787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928752
53569	chr3	-	2852	2	ISM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	541	4	541	-4	3prime_fragment	FALSE	canonical	3	36	junction_1	0	82	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACCGGTTTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	83748533	83743582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_83746097_83748195
53570	chr8	+	1903	9	NNC	ENSMUSG00000031813.9	novel	1062	9	NA	NA	56	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	135.696352198576	18	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTGGAGTGTATTGTT	NA	False	NA	NA	False	NA	NA	NA	71995642	72000668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998393_71998915_71999118_71999679_72000221_72000279_72000405
53572	chr13	+	1558	5	NNC	ENSMUSG00000021501.5	novel	1382	4	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	44.073801742078	2	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACTAATAGAAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	55770822	55780220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55771070_55772523_55772985_55775441_55775627_55776389_55776456_55779621
53573	chr4	-	1836	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	85	185	-33	-185	multi-exon	FALSE	canonical	3	184	junction_2	7.07106781186548	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAGTTGAATACAATCATA	NA	False	NA	NA	False	NA	NA	NA	116565518	116559660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
53574	chr13	+	1569	8	FSM	ENSMUSG00000021514.19	ENSMUST00000130799.8	1580	8	13	-2	13	2	multi-exon	FALSE	canonical	1	4	junction_7	17.3980998258724	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCTGTGATAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	65426640	65452037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65451631
53575	chr5	-	2620	3	FSM	ENSMUSG00000029394.12	ENSMUST00000111473.8	715	3	-1599	-306	-199	-21	multi-exon	FALSE	canonical	3	1213	junction_1	38.5	603	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGTATTACGATGTGGA	7072	False	NA	NA	False	NA	NA	NA	124489916	124483500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_124484218_124486663_124486791_124488140
53576	chr10	-	2153	8	NIC	ENSMUSG00000039480.15	novel	1978	11	NA	NA	7008	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	44.442120120628	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTATAGATGTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	34287456	34179612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_34180976_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34275733_34275814_34283530_34283603_34287363
53577	chr12	+	2239	11	NNC	ENSMUSG00000047022.19	novel	2117	11	NA	NA	30	1689	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	22.3472593397938	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTATAGTGTCTGACTT	NA	False	NA	NA	False	NA	NA	NA	57277306	57505707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57504768
53578	chrX	+	2476	1	FSM	ENSMUSG00000071723.8	ENSMUST00000096368.4	2491	1	8	7	1	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	69	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTGAAATGTGTTTGAA	4264	False	NA	NA	False	NA	NA	NA	93679682	93682158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_93679700_93682200
53579	chr5	-	3968	5	FSM	ENSMUSG00000066640.12	ENSMUST00000035985.8	2831	5	47	-1184	47	1171	multi-exon	FALSE	canonical	3	17	junction_3	6.28490254498827	55	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGCTGTAGACAAGGGAC	NA	False	NA	NA	False	NA	NA	NA	142880946	142856359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142858276_142864412_142864632_142871293_142872838_142874423_142874631_142880864
53580	chr7	+	2783	8	ISM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	5738	0	5656	0	3prime_fragment	FALSE	canonical	3	195	junction_7	20.2474488188875	1	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	132466691	132486840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
53581	chr3	-	1743	7	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	882.812692477855	1	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGGTCTTAGTCTTGG	7190	False	NA	NA	False	NA	NA	NA	89906004	89902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903706_89904125_89904873_89905086_89905311_89905834
53582	chr11	+	1230	10	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	32	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1083.46747887409	3	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTACAACTCCAGTTTG	4568	False	NA	NA	False	NA	NA	NA	106147011	106153944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152542_106152877_106153135_106153229_106153333_106153406_106153518_106153622_106153710_106153834
53583	chr15	+	1512	9	FSM	ENSMUSG00000009585.19	ENSMUST00000175714.8	1953	9	36	405	-3	144	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTGCTACTCTGGAACT	8282	False	NA	NA	False	NA	NA	NA	79776639	79791714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
53584	chr13	+	1930	1	Intergenic	novelGene_1515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGCCAGGCGTGATGG	NA	False	NA	NA	False	NA	NA	NA	98894251	98896181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_98894300_98896200
53585	chr8	+	1632	5	NNC	ENSMUSG00000062380.5	novel	1868	4	NA	NA	-37	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	43.4424907204916	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGCCTGGTATTGGAGA	NA	False	NA	NA	False	NA	NA	NA	124138291	124148749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345_124147480_124147581
53587	chrX	+	1352	13	Antisense	novelGene_ENSMUSG00000002010.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	24	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGAGGGGAAGGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	72822580	72830632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72822770_72823063_72823132_72823218_72823318_72823584_72823732_72823820_72823921_72824178_72824314_72824503_72824637_72824757_72824818_72825281_72825401_72825615_72825708_72826272_72826325_72830382_72830480_72830571
53588	chr15	-	2485	17	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	23	-1	intron_retention	FALSE	canonical	3	70	junction_6	14.2609606969517	1	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACAGTCTGGTCCCTGAC	NA	False	NA	NA	False	NA	NA	NA	89080624	89069020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
53589	chr7	-	1468	10	NNC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	1001	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	155.5978513927	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACTGAGTGGTATGAGA	NA	False	NA	NA	False	NA	NA	NA	27241169	27231433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237044_27237145_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110
53591	chr8	-	1460	8	Fusion	ENSMUSG00000005705.11_ENSMUSG00000013160.8	novel	1629	8	NA	NA	-56	-8	multi-exon	FALSE	canonical	0	0	junction_7	267.183954058103	5	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAAACCCTGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	106364081	106251104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_106251631_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106363911
53592	chrX	+	4302	1	Intergenic	novelGene_3965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGACCTTTGATTACTGA	NA	False	NA	NA	False	NA	NA	NA	84092998	84097300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_84093000_84097300
53593	chr1	-	953	4	NNC	ENSMUSG00000060743.13	novel	2841	4	NA	NA	-15	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1201.87141112886	7	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATACCTGCTTCTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	180641127	180630134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180630714_180637704_180637836_180639363_180639515_180641035
53594	chr18	-	5559	31	Intergenic	novelGene_4506	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	62	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTCCGAGAGGCTAGCG	NA	False	NA	NA	False	NA	NA	NA	10557380	10325219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_10325295_10449933_10450035_10458219_10458380_10458575_10458775_10469340_10469517_10474216_10474394_10476663_10476787_10498948_10499066_10499881_10500001_10500937_10501077_10503155_10503340_10509078_10509408_10510625_10510755_10511326_10511463_10515192_10515389_10522084_10522267_10523204_10523399_10529574_10529710_10532798_10533133_10537061_10537178_10538129_10538375_10541640_10542188_10542339_10542444_10544444_10544601_10544866_10545007_10547007_10547170_10547278_10547485_10553701_10553867_10554821_10555050_10555883_10556027_10557238
53595	chr4	+	1704	6	NIC	ENSMUSG00000028821.9	novel	1369	7	NA	NA	3	-8	intron_retention	FALSE	canonical	3	670	junction_4	33.3550595862157	1197	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCGAACAGTGTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	134658215	134664851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_134658330_134658490_134658596_134661766_134662361_134662684_134662776_134663293_134663393_134664150
53596	chr18	-	1911	12	NNC	ENSMUSG00000001380.8	novel	1989	13	NA	NA	-35	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	205.394721781104	1	89	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGCTAACCTGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	36916210	36899589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36904030_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
53597	chr11	-	1693	2	NNC	ENSMUSG00000018442.14	novel	1466	7	NA	NA	6700	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTATTTAAGCTTTCG	NA	False	NA	NA	False	NA	NA	NA	70903338	70900758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70901889_70902775
53598	chr17	-	1598	8	NIC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-19	-7	intron_retention	FALSE	canonical	3	702	junction_7	58.3997483919657	9	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCAGGCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46558913	46554852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46557141_46558654_46558727_46558820
53599	chr6	-	769	5	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	89	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2501.92555844494	1	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTCGGGCTGATTGCTG	NA	False	NA	NA	False	NA	NA	NA	125471665	125437231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438273_125439076_125439084_125449383_125449475_125471536
53600	chr4	+	1649	14	NNC	ENSMUSG00000012126.17	novel	553	5	NA	NA	231	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	29.3582241534427	203	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCACAAGGCTCTCCAG	NA	False	NA	NA	False	NA	NA	NA	133835890	133854090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_133836134_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
53601	chr9	+	2354	9	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	133	-29914	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	117.695515526294	5	109	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGCCTCCAGCCCAATAC	NA	False	NA	NA	False	NA	NA	NA	114230308	114273531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114272045
53602	chr17	-	1491	4	Fusion	ENSMUSG00000097154.3_ENSMUSG00000047407.18	novel	1446	3	NA	NA	5	-13	multi-exon	TRUE	canonical	3	16	junction_2	405.421043141846	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAAAAGTTATTGCAAT	NA	False	NA	NA	False	NA	NA	NA	71231986	71151218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_71152268_71153166_71153394_71186892_71187002_71231880
53603	chr2	+	2168	13	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	-17	-10993	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	105.19779650206	1	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAATGGCTCCTTCGTCT	3544	False	NA	NA	False	NA	NA	NA	126549230	126590175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584606_126589421_126589497_126590105
53605	chr8	+	1924	7	FSM	ENSMUSG00000019478.18	ENSMUST00000117702.2	1080	7	-40	-804	-40	2	multi-exon	FALSE	canonical	0	0	junction_5	143.451211218309	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTACACTGTCCTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	124532766	124562028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753
53606	chr7	+	2045	13	NIC	ENSMUSG00000003437.15	novel	2003	14	NA	NA	15	-2	intron_retention	FALSE	canonical	3	173	junction_4	15.3803626600791	328	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTCATCTCCTAAAGTCT	595	False	NA	NA	False	NA	NA	NA	28092401	28098806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
53608	chr9	+	4065	22	ISM	ENSMUSG00000032485.15	ENSMUST00000098350.10	4227	23	19596	6	-8232	-6	3prime_fragment	FALSE	canonical	3	74	junction_11	17.7776643987314	64	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTACCAGGGGCTGAAGT	NA	False	NA	NA	False	NA	NA	NA	110182019	110214012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110182233_110191461_110191592_110201264_110201423_110202043_110202265_110202457_110202564_110203064_110203238_110203577_110203705_110205630_110205744_110206706_110206802_110207411_110207511_110207636_110207856_110208523_110208901_110209268_110209458_110209561_110209764_110209840_110209957_110210039_110210554_110210630_110210717_110212616_110212700_110212799_110212967_110213133_110213215_110213334_110213542_110213623
53610	chr9	+	2044	9	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	15	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	63.057389535248	1	122	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTTACTTGCTATGGT	NA	False	NA	NA	False	NA	NA	NA	108174083	108179487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178432_108178531
53612	chr7	+	2799	9	NNC	ENSMUSG00000025485.14	novel	3406	10	NA	NA	6	0	intron_retention	FALSE	non_canonical	0	0	junction_2	87.5484687187617	4	93	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTTTAACATTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140437369	140443056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140437468_140437757_140437802_140437894_140438486_140438775_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
53613	chr11	+	864	7	ISM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	7024	1176	-1266	192	internal_fragment	FALSE	canonical	3	1941	junction_2	114.061995813193	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCTTAGAGTTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	69478254	69481523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481
53615	chr8	+	2847	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	60	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121463096	121483433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
53616	chr6	+	1306	6	NNC	ENSMUSG00000079426.14	novel	2270	6	NA	NA	3	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	522.364087586427	1	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGAGGTCTGTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	113355078	113366607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362541_113365809
53617	chrX	+	1384	7	NNC	ENSMUSG00000000355.14	novel	764	4	NA	NA	260	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	288.646121285794	2	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCGGATGCTTAATTTCTG	NA	False	NA	NA	False	NA	NA	NA	37689791	37702289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37696963_37697209_37700631_37700711_37702097
53618	chr13	+	1413	9	NNC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	63.3994035855228	6	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTTATTTTTTTGTACT	NA	False	NA	NA	False	NA	NA	NA	43519118	43548677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530212_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
53619	chr9	+	1564	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	32	0	3	0	multi-exon	FALSE	canonical	3	299	junction_8	33.0111250186963	333	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	106080338	106092588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
53620	chr16	-	918	1	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	213	-227	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATTGCCAGCATGTGTGC	NA	False	NA	NA	False	NA	NA	NA	20532205	20531287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20531300_20532200
53621	chr16	-	733	1	NIC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	-1408	-197	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCCCATAGGACTGCCC	NA	False	NA	NA	False	NA	NA	NA	20529284	20528551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20528600_20529300
53622	chr19	-	1304	8	FSM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	-17	0	-4	0	multi-exon	FALSE	canonical	3	219	junction_7	142.172789382555	276	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6423	False	NA	NA	False	NA	NA	NA	6134990	6130791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134893
53623	chr9	+	1708	10	FSM	ENSMUSG00000032118.17	ENSMUST00000034630.15	1794	10	84	2	4	2	multi-exon	FALSE	canonical	3	83	junction_5	5.61743318211757	164	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTCATGGTTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	36744063	36790218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_36744208_36754957_36755314_36761642_36761743_36772107_36772195_36774792_36774962_36778991_36779264_36780143_36780225_36781776_36781853_36787592_36787659_36789861
53624	chr11	+	1768	9	NNC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	10	-82	intron_retention	FALSE	non_canonical	0	0	junction_6	278.235399437239	3	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCCTAGTCTGTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	68936525	68942408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939686_68941119_68941303_68941725_68942137_68942176
53625	chr9	-	1994	7	ISM	ENSMUSG00000033419.17	ENSMUST00000074501.12	2577	20	96994	-744	15279	-1	3prime_fragment	FALSE	canonical	2	5	junction_3	8.65544144839919	10	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATGCAAACGTAATCTT	NA	False	NA	NA	False	NA	NA	NA	86665473	86647986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_86649390_86655571_86655677_86656249_86656334_86657644_86657745_86659086_86659118_86663622_86663773_86665352
53627	chr4	-	3306	6	NIC	ENSMUSG00000039410.17	novel	8429	16	NA	NA	38	-2389	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	8.81816307401944	27	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAAACCCCAAATTATAT	NA	False	NA	NA	False	NA	NA	NA	154419271	154402970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_154405380_154407703_154407938_154412716_154412892_154413120_154413291_154418831_154418910_154419031
53628	chr10	-	2886	24	NNC	ENSMUSG00000025357.9	novel	2834	24	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_21	16.2450515949704	105	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTCCCGCAAGGTTCT	10006	False	NA	NA	False	NA	NA	NA	128579929	128556004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572444_128572588_128572877_128573014_128579664
53629	chr9	+	1121	1	Intergenic	novelGene_1175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTCTATAACCAGTG	NA	False	NA	NA	False	NA	NA	NA	114256966	114258087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_114257000_114258100
53630	chr3	-	853	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197786.5	857	6	1	3	1	-2	multi-exon	FALSE	canonical	3	24	junction_4	742.362876226984	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGGTCTTAGTCTTGG	7211	False	NA	NA	False	NA	NA	NA	89905983	89902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89905108_89905311_89905834
53631	chr9	-	495	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	3	1	3	-1	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	11	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGGACTGGTCTCACTT	NA	False	NA	NA	False	NA	NA	NA	61821821	61820566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_61820804_61821169_61821245_61821638
53632	chr17	-	936	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	-28	-79	-28	5	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTTCCTGCATTGAGC	NA	False	NA	NA	False	NA	NA	NA	36395143	36391001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
53633	chr11	-	1525	11	NNC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-3	398	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	272.530805598193	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTGAGCAGGATCTGGTG	NA	False	NA	NA	False	NA	NA	NA	95201030	95172329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95172455_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
53635	chrX	+	1518	11	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_10	63.2250741399328	278	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTATGACTTGACCTCAA	4016	False	NA	NA	False	NA	NA	NA	7588465	7594425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7594049
53636	chrX	+	1742	3	Antisense	novelGene_ENSMUSG00000031392.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	217	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAACCTCTAGCTCCCAG	NA	False	NA	NA	False	NA	NA	NA	73057841	73061059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_73059106_73060149_73060303_73060734
53637	chr1	-	1546	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	29	1275	8	-1275	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	47	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTGTTGGGTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	60137276	60117301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
53638	chr1	+	1006	9	NNC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_5	1860.54535015946	90	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864742_160865059_160865118_160865564_160865608_160865794_160865843_160866026
53640	chr7	+	1186	7	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	82.5873275186131	589	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	NA	False	NA	NA	NA	130972884	130989568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130986527_130986594_130989346
53641	chr7	+	1358	2	NIC	ENSMUSG00000039745.9	novel	983	3	NA	NA	7	0	intron_retention	FALSE	canonical	3	230	junction_1	0	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTGTCTCGCTCTTAC	9901	False	NA	NA	False	NA	NA	NA	49408883	49412507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_49409542_49411807
53642	chr9	+	247	1	Intergenic	novelGene_1058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGAGCTTCTGCTAAAGG	NA	False	NA	NA	False	NA	NA	NA	57411038	57411285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_57411000_57411300
53643	chr5	+	2441	19	NNC	ENSMUSG00000038023.13	novel	5345	20	NA	NA	-3	-1933	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	55.9436720679332	1	52	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGGGCTGCGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	124767126	124796947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782981_124783872_124783979_124784543_124784757_124789274_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914
53644	chr17	-	1515	5	FSM	ENSMUSG00000039615.10	ENSMUST00000235484.2	1498	5	-17	0	5	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.4115371143218	1321	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6770	False	NA	NA	False	NA	NA	NA	26051910	26049609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26049985_26050075_26050606_26050769_26050936_26051019_26051219_26051665
53645	chr11	+	2152	7	Antisense	novelGene_ENSMUSG00000041346.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	59	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCTTGCTCTCGCGGGA	8945	False	NA	NA	False	NA	NA	NA	69452590	69470087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69453323_69453473_69453686_69454147_69454464_69454684_69454772_69468449_69468563_69469271_69469372_69469495
53647	chr13	-	1539	5	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	-6	433	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.243025333511	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGGTGCATATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	62564833	62549873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62550605_62550655_62551194_62555228_62555290_62555482_62555610_62564751
53648	chr3	+	4254	23	NNC	ENSMUSG00000042404.17	novel	5647	28	NA	NA	377	-26	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	14.6896967321536	61	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGCTTCTGTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	90176699	90187950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90176786_90177361_90177429_90177519_90177579_90177753_90177899_90178135_90178312_90178440_90178542_90178873_90179090_90179562_90179709_90180021_90180162_90180243_90180371_90181110_90181320_90181595_90181725_90182752_90182952_90183529_90183698_90184186_90184576_90184727_90184851_90185041_90185212_90185294_90185437_90185617_90185855_90186466_90186594_90186684_90186851_90186926_90186992_90187083
53651	chr3	+	1096	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	5	0	5	0	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	548	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	NA	False	NA	NA	NA	90138908	90143145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
53652	chr7	-	1516	13	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-4	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	316.64157795351	16	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATCTCAAACCCACCTC	NA	False	NA	NA	False	NA	NA	NA	16761738	16738576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16738659_16739188_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
53653	chr16	+	1728	6	NNC	ENSMUSG00000022724.16	novel	1753	9	NA	NA	12	742	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	113.979998245306	8	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATCTTCCTGCAGGA	NA	False	NA	NA	False	NA	NA	NA	59292149	59313566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303467_59312805
53654	chr14	+	1076	3	ISM	ENSMUSG00000058317.13	ENSMUST00000175643.8	757	6	257864	-442	-33192	-22	3prime_fragment	FALSE	canonical	3	197	junction_2	14	101	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCACTGTGGCGGATCA	NA	False	NA	NA	False	NA	NA	NA	3839262	3896097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_3839398_3882697_3882846_3895304
53655	chr14	+	377	1	Intergenic	novelGene_506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAAAAATAATGTTATT	NA	False	NA	NA	False	NA	NA	NA	3897697	3898074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_3897700_3898100
53656	chr8	-	1225	1	Intergenic	novelGene_1605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGGCCTAAAGACCGTT	NA	False	NA	NA	False	NA	NA	NA	26287628	26286403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_26286400_26287600
53657	chr8	-	1104	1	Intergenic	novelGene_1604	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGATGGGCTTCAATACTC	NA	False	NA	NA	False	NA	NA	NA	26285571	26284467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_26284500_26285600
53658	chr2	-	1181	8	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-1011	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6594.88651942409	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCGATCTGTCCTTCAG	3736	False	NA	NA	False	NA	NA	NA	154734751	154714348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714779_154718535_154718593_154719590_154719677_154720439_154720485_154726230_154726367_154729620_154729728_154730102_154730281_154734609
53659	chrX	-	2785	12	NIC	ENSMUSG00000031169.14	novel	1839	13	NA	NA	10	-12	intron_retention	FALSE	canonical	3	57	junction_5	6.4166621945532	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAACTTACACAACAGGC	2008	False	NA	NA	False	NA	NA	NA	8072720	8060103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8060517_8064213_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
53660	chr9	+	1376	4	ISM	ENSMUSG00000084786.10	ENSMUST00000161882.8	489	5	-59	8	-12	-8	intron_retention	FALSE	canonical	3	1048	junction_1	67.7462586092808	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTTGGCTGCTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20556104	20558057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917
53661	chr16	+	1745	2	NIC	ENSMUSG00000060636.15	novel	518	4	NA	NA	120	0	intron_retention	FALSE	canonical	3	8092	junction_1	0	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGTATTTTTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	32877507	32880526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32879194_32880467
53662	chr7	+	1751	8	NNC	ENSMUSG00000025510.15	novel	1865	8	NA	NA	5	8	intron_retention	FALSE	non_canonical	0	0	junction_1	132.663299447919	1	43	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTTGCTGACAGGACCT	NA	False	NA	NA	False	NA	NA	NA	141047355	141051394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141047430_141048339_141048460_141049167_141049259_141049378_141049575_141049849_141049925_141050033_141050139_141050222_141050382_141050463
53664	chrX	-	1661	9	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACACTTGGGAGGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	143152672	143133700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_143134373_143134770_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147107_143150898_143150933_143152553
53665	chr3	+	1129	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	-14	374	-14	-372	multi-exon	TRUE	canonical	3	743	junction_2	141.598022585063	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGCCAATGCAGCTGC	NA	False	NA	NA	False	NA	NA	NA	89084765	89089698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
53666	chr19	+	1975	11	FSM	ENSMUSG00000024909.16	ENSMUST00000166303.9	2634	11	-8	667	-8	-3	multi-exon	FALSE	canonical	2	4	junction_1	23.5805004187782	77	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCCTGGCTGAGGTGGG	NA	False	NA	NA	False	NA	NA	NA	5523973	5531878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5524482_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
53668	chr17	+	1173	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	-52	14	14	-2	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	153	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGAGGTTTGCACACAT	NA	False	NA	NA	False	NA	NA	NA	48717055	48724280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
53669	chr10	+	2277	2	Antisense	novelGene_ENSMUSG00000051346.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTAGATGATCTGTGTGC	3436	False	NA	NA	False	NA	NA	NA	128046884	128049764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128048108_128048710
53670	chr12	-	2068	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	40	31	40	-31	multi-exon	FALSE	canonical	3	159	junction_1	0	242	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATCATAAACATTTTTG	NA	False	NA	NA	False	NA	NA	NA	111679651	111675952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111677847_111679477
53671	chr1	+	2139	8	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.9738693139914	3	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	NA	False	NA	NA	NA	165957790	165994079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165957912_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992845_165992974
53672	chr8	+	1136	1	Antisense	novelGene_ENSMUSG00000083718.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAATTTTCCTTTCATC	NA	False	NA	NA	False	NA	NA	NA	72670871	72672007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_72670900_72672000
53673	chr11	+	2999	2	FSM	ENSMUSG00000047205.13	ENSMUST00000055931.5	4632	2	17	1616	17	327	multi-exon	FALSE	canonical	2	4	junction_1	0	9	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTACCACAGCCTCTGGTG	5262	False	NA	NA	False	NA	NA	NA	3845256	3849680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3845518_3846942
53674	chr14	-	1401	4	Genic_Genomic	ENSMUSG00000114922.2	novel	1159	3	NA	NA	814	2756	multi-exon	FALSE	non_canonical	0	0	junction_1	0	114	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGAGGGCGCGCGGAAGA	NA	False	NA	NA	False	NA	NA	NA	25700892	25694641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_25694872_25696422_25696515_25698687_25698763_25699888
53675	chr4	+	2797	3	Intergenic	novelGene_2063	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTCCCTCCTGATAAGT	NA	False	NA	NA	False	NA	NA	NA	146326436	146331742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146328160_146328607_146328729_146330789
53676	chr16	-	3524	1	NIC	ENSMUSG00000052459.14	novel	4234	15	NA	NA	12	-23752	mono-exon	FALSE	NA	NA	NA	NA	NA	9	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATTTTGAATCGGGTGAG	NA	False	NA	NA	False	NA	NA	NA	43959331	43955807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_43955800_43959300
53678	chr9	+	3056	8	NIC	ENSMUSG00000032078.18	novel	2984	14	NA	NA	-772	117	intron_retention	FALSE	canonical	3	619	junction_3	49.3144843564945	1	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCCGCCTCTGCGTTCAT	NA	False	NA	NA	False	NA	NA	NA	46185982	46192899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_46187152_46187497_46187546_46187709_46187777_46188089_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
53679	chr4	-	1203	8	NNC	ENSMUSG00000028851.7	novel	1316	8	NA	NA	22	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1333.70672662811	32	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTACCCTCTTCCACCTG	4482	False	NA	NA	False	NA	NA	NA	133273285	133259868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133260098_133260567_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
53681	chr7	-	1089	1	ISM	ENSMUSG00000054499.10	ENSMUST00000206750.2	4594	5	15929	2927	15929	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	52	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGTCCAGGCTCTCCGGTA	780	False	NA	NA	False	NA	NA	NA	24903355	24902266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_24902300_24903400
53682	chr14	+	2474	17	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	49	-277	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	340.996832600759	1	116	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCTTCATTGTATCACT	NA	False	NA	NA	False	NA	NA	NA	122344728	122396739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344797_122361147_122361196_122363517_122363612_122370697_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
53683	chr11	+	2574	12	NNC	ENSMUSG00000020741.18	novel	5379	26	NA	NA	184	428	intron_retention	FALSE	canonical	0	0	junction_3	100.733918389238	1	124	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCATAACCTTGGGGGCC	NA	False	NA	NA	False	NA	NA	NA	74555491	74561159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74555753_74555832_74555896_74556007_74556250_74556518_74556604_74556748_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
53685	chr5	-	1897	13	Intergenic	novelGene_708	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTAGGGTGAGAGTATTA	NA	False	NA	NA	False	NA	NA	NA	37282382	37245556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_37245649_37248279_37248343_37248468_37248963_37257976_37258188_37259106_37259226_37262153_37262303_37262953_37263093_37264599_37264661_37274783_37274913_37276120_37276251_37278283_37278366_37280620_37280685_37282218
53686	chr10	-	585	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	8	11	-2	-11	multi-exon	FALSE	canonical	3	958	junction_1	11.5	2602	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCACGCACATGTGTGT	3102	False	NA	NA	False	NA	NA	NA	81102760	81100557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81100832_81101484_81101642_81102606
53687	chr1	+	3246	6	FSM	ENSMUSG00000026349.15	ENSMUST00000143513.2	1118	6	52	-2180	52	2180	multi-exon	FALSE	canonical	3	419	junction_5	41.2863173460651	5	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTAAGACGGATAAAATTC	NA	False	NA	NA	False	NA	NA	NA	127701952	127728318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577
53688	chrUn_JH584304v1	-	1875	8	Intergenic	novelGene_4693	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	324.883150108604	1	96	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGCCTTCATAACTGCT	NA	False	NA	NA	False	NA	NA	NA	59731	53215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53833_54318_54480_54722_54868_55111_55249_55464_55702_56985_57152_58563_58836_59591
53690	chr15	-	803	1	ISM	ENSMUSG00000018042.19	ENSMUST00000162834.3	1982	9	15864	17	15864	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGCAAATCCCGACCCT	NA	False	NA	NA	False	NA	NA	NA	83038514	83037711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_83037700_83038500
53691	chr5	+	2161	1	NIC	ENSMUSG00000029221.16	novel	5648	17	NA	NA	21520	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGATTTGTTACGGTAGTT	NA	False	NA	NA	False	NA	NA	NA	67510961	67513122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_67511000_67513100
53692	chr18	+	1286	4	NNC	ENSMUSG00000037058.17	novel	1475	4	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1431.34955743017	22	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4653	False	NA	NA	False	NA	NA	NA	35731682	35750239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35731813_35743923_35744048_35746511_35746556_35749251
53693	chr16	+	2077	6	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	4089	-31	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_3	192.31224609993	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGCTGTTGTAAAATATTA	NA	False	NA	-58	True	NA	NA	NA	48108238	48114569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48108359_48109401_48109569_48109690_48110476_48111376_48111678_48113273_48113470_48114061
53695	chr5	-	1535	8	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	7	1001	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.30684129223	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTAATCTGTGTTAGGAG	NA	False	NA	NA	False	NA	NA	NA	4154414	4132278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4132710_4141915_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
53696	chr18	+	2398	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	362.40677900584	1	114	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTGATATAGACTAACAA	6432	False	NA	-90	True	NA	NA	NA	77126250	77240836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126342_77126558_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
53697	chr5	+	2508	17	NIC	ENSMUSG00000029095.18	novel	3564	20	NA	NA	-15	-39	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	28.6552787458088	3	45	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCGCTTCCTTACACAT	1542	False	NA	NA	False	NA	NA	NA	35915252	36041454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36014471_36014525_36015169_36015309_36024048_36024111_36030513_36030569_36032176_36032258_36040649
53698	chr1	-	2228	9	NNC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	-9	-9	at_least_one_novel_splicesite	FALSE	canonical	1	21	junction_7	425.706893736759	1	121	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTTTGAAGTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	65225606	65197785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205441_65207657_65207764_65210117_65210399_65214389_65214528_65225463
53699	chr7	+	1663	5	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	15	intron_retention	FALSE	canonical	3	230	junction_1	21.9928965804871	611	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAACCCTGTGTGTTGTTC	9894	False	NA	NA	False	NA	NA	NA	49408876	49423738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
53700	chr11	+	2207	12	NNC	ENSMUSG00000018932.10	novel	2198	12	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	191.818224903054	20	84	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTGTGAGACTGACTGTGG	NA	False	NA	NA	False	NA	NA	NA	60822879	60843622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60823098_60832705_60832773_60833130_60833227_60833976_60834091_60834312_60834433_60835490_60835602_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842034_60842589
53701	chr13	-	2214	7	ISM	ENSMUSG00000038991.18	ENSMUST00000160653.2	2586	10	14622	4	-7350	0	3prime_fragment	FALSE	canonical	3	973	junction_6	65.3743493700362	206	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAAAGTCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	38697268	38684252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_38685685_38687406_38687537_38688699_38688783_38690924_38691066_38691869_38691957_38694102_38694219_38697043
53702	chr13	+	2219	13	ISM	ENSMUSG00000038080.18	ENSMUST00000037025.16	4987	21	-8	16167	-8	-3171	5prime_fragment	FALSE	canonical	3	35	junction_2	9.55212309152031	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAATCAGAGCTGCGA	1153	False	NA	NA	False	NA	NA	NA	47196966	47222588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_47197147_47201378_47201479_47202653_47202782_47204085_47204176_47205264_47205377_47207094_47207212_47212251_47212291_47214228_47214458_47216433_47216619_47217529_47217707_47218046_47218122_47220920_47221059_47221939
53704	chr11	-	1447	8	FSM	ENSMUSG00000017176.18	ENSMUST00000107397.2	1348	8	-94	-5	-2	-1	multi-exon	FALSE	canonical	3	485	junction_1	42.2470866040561	800	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	100331848	100320179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
53705	chr18	-	1968	7	NNC	ENSMUSG00000024579.8	novel	2017	6	NA	NA	70	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	34.3693177121688	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGACTTATTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	61840614	61829906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61831048_61831434_61831576_61832363_61832576_61835266_61835442_61836423_61836466_61836582_61836790_61840564
53706	chr6	-	1943	4	NIC	ENSMUSG00000068335.7	novel	1807	5	NA	NA	33	2	intron_retention	FALSE	canonical	3	31	junction_1	4.92160768674447	232	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGCGTATGAATGAGCA	NA	False	NA	NA	False	NA	NA	NA	83010416	83007912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83009397_83009515_83009610_83009747_83010048_83010351
53707	chr15	-	1614	7	ISM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	207	10	3	-10	intron_retention	FALSE	canonical	3	165	junction_2	22.4028767993954	54	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGACGTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	98779154	98775668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388
53708	chrX	-	1816	13	FSM	ENSMUSG00000031169.14	ENSMUST00000089402.10	1839	13	20	3	10	0	multi-exon	TRUE	canonical	3	57	junction_2	6.61857655055493	143	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACAGGCTCGGTTTTTTGG	2008	False	NA	NA	False	NA	NA	NA	8072720	8060091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
53711	chr9	+	1969	1	Intergenic	novelGene_1174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGAGCTAAAGTGTGACC	NA	False	NA	NA	False	NA	NA	NA	114254107	114256076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_114254100_114256100
53712	chr16	+	4482	15	ISM	ENSMUSG00000057880.13	ENSMUST00000065987.14	4636	16	59407	8	-66	-8	3prime_fragment	FALSE	canonical	2	6	junction_12	3.19837331103402	16	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGGAAATGTCAGAGTGAA	NA	False	NA	NA	False	NA	NA	NA	8390699	8439424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_8390815_8396094_8396193_8399762_8399793_8400600_8400719_8406749_8406800_8418773_8418855_8420149_8420243_8421333_8421397_8421552_8421617_8423375_8423525_8426719_8426858_8428990_8429159_8431846_8431994_8433753_8433866_8436368
53713	chr3	+	1539	8	NNC	ENSMUSG00000027601.14	novel	2953	8	NA	NA	-17	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	528.815889415172	1	72	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATGTTTACTGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	19242411	19273710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_19242457_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271352_19271588_19272325_19272486_19273201
53714	chr17	-	1942	8	NNC	ENSMUSG00000036775.14	novel	2167	8	NA	NA	120	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	74.4070437745332	7	120	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGACAGAAAAAAAATTGACT	NA	False	NA	NA	False	NA	NA	NA	26309074	26300217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302812_26302913_26302984_26303110_26306297_26306468_26307902_26307972_26308937
53715	chr7	-	1517	12	NNC	ENSMUSG00000102252.6	novel	2076	11	NA	NA	846	-620	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	898.306110281231	2	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCAATTGGGGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	59654013	59632869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59652693_59652811_59653517_59653639_59653963
53716	chr7	-	1241	1	NIC	ENSMUSG00000031004.9	novel	10061	14	NA	NA	9323	4288	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAACCTATAACGGAAGAC	NA	False	NA	NA	False	NA	NA	NA	135303317	135302076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_135302100_135303300
53717	chr18	+	1609	10	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	12	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	353.837411221944	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGCATATTTGTGG	1058	False	NA	NA	False	NA	NA	NA	84953164	84999576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84953291_84975444_84975556_84976396_84976502_84977193_84977437_84978140_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
53718	chr15	+	2666	5	ISM	ENSMUSG00000008690.16	ENSMUST00000145793.2	836	8	2267	1221	2267	206	internal_fragment	FALSE	canonical	3	988	junction_1	34.7023053989213	6	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGAAGGATTTCAGGATG	NA	False	NA	NA	False	NA	NA	NA	89242383	89248313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_89244661_89247633_89247690_89247807_89248038_89248124_89248205_89248290
53719	chr3	-	2195	2	NNC	ENSMUSG00000037016.12	novel	2360	7	NA	NA	6814	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	13	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATTTTGTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	53423627	53421360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53422351_53422422
53721	chr6	+	1068	5	NNC	ENSMUSG00000036371.7	novel	717	5	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2824.27356810561	42	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTACCAGTTTAAAGCT	5843	False	NA	NA	False	NA	NA	NA	67243965	67261281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244394_67248181_67248333_67248870_67248930_67258770_67258806_67260886
53722	chr16	-	1008	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	25	2	-12	0	multi-exon	FALSE	canonical	3	566	junction_1	21	3370	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	15681186	15666306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15666594_15680261_15680408_15680611
53723	chrX	-	1509	11	NNC	ENSMUSG00000036932.15	novel	2221	16	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	467.537763180687	1	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	47602329	47563820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_47564066_47564439_47564637_47566576_47566702_47569006_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575086_47602112
53724	chr17	+	2952	10	NIC	ENSMUSG00000023952.14	novel	2966	12	NA	NA	-6	0	intron_retention	FALSE	canonical	2	6	junction_6	17.1363450300131	2	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGCTTATTCTTAAGA	NA	False	NA	NA	False	NA	NA	NA	46472080	46480294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46472253_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46477236_46477373_46477517_46477577_46478148_46478817_46479071
53726	chr1	+	1944	9	NNC	ENSMUSG00000097680.2	novel	2782	3	NA	NA	5048	-7978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	107	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGCCCCCACCCGCTCTA	NA	False	NA	NA	False	NA	NA	NA	135181346	135186203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_135182123_135182679_135182859_135183712_135183835_135183977_135184058_135184201_135184331_135184521_135184613_135184742_135185024_135185351_135185520_135186085
53727	chr7	+	759	1	ISM	ENSMUSG00000047603.10	ENSMUST00000205736.2	1297	3	1975	3	1907	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAACTTGCCTTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	23835573	23836332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_23835600_23836300
53728	chr4	-	1120	8	NNC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	228.444071662083	5	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTCTCGTTATACCTTA	NA	False	NA	NA	False	NA	NA	NA	134642299	134625158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134625454_134625502_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
53729	chr8	-	1608	3	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20992	-712	3562	712	intron_retention	FALSE	canonical	3	94	junction_1	2	185	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	NA	NA	NA	122650651	122642152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122643247_122644726_122644883_122650293
53730	chr3	+	2164	9	FSM	ENSMUSG00000028098.14	ENSMUST00000029740.14	2209	9	46	-1	38	1	multi-exon	FALSE	canonical	3	647	junction_7	60.034885691571	298	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGCTTCAGCGTCTCAAA	4841	False	NA	NA	False	NA	NA	NA	96635025	96698469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
53733	chr12	-	1184	8	NNC	ENSMUSG00000002679.15	novel	1059	8	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	173.536916027944	1298	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCATGCCTTTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	81641741	81620337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_81620735_81621298_81621327_81626343_81626649_81628592_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
53734	chr11	+	2121	9	ISM	ENSMUSG00000017715.12	ENSMUST00000132676.8	2863	10	11169	0	-3334	0	3prime_fragment	TRUE	canonical	1	116	junction_8	71.5065556435212	211	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	9727	False	NA	NA	False	NA	NA	NA	117888286	117914837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905399_117905549_117910432_117910559_117914230
53735	chr7	-	2097	11	NNC	ENSMUSG00000030521.12	novel	2248	11	NA	NA	66	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	213.058888573089	1	116	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGTTTGTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	64041918	64026331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034045_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
53738	chr18	+	959	3	FSM	ENSMUSG00000036299.6	ENSMUST00000040284.6	979	3	21	-1	-11	1	multi-exon	FALSE	canonical	3	169	junction_1	315	82	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTGCTTTTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	75138959	75143005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_75139086_75141721_75141898_75142348
53739	chr2	-	1648	11	NNC	ENSMUSG00000027104.19	novel	3943	12	NA	NA	198	224	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_10	126.468533635842	1	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCACTCTTCCCACTTC	NA	False	NA	NA	False	NA	NA	NA	73722676	73648941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722620
53740	chr3	-	1796	6	FSM	ENSMUSG00000040374.14	ENSMUST00000071280.8	1777	6	-16	-3	1	-1	multi-exon	FALSE	canonical	1	3	junction_4	21.3672646822189	56	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTGCATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	5641204	5625560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5635546_5635690_5641097
53741	chr7	-	3590	13	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	2	-149	intron_retention	FALSE	canonical	3	30	junction_1	68.4987327538903	4	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCCGAGGGGAGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	16020696	16008118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
53742	chr3	-	782	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	107	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3914.76974546397	9	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCGTTTGCTTCTGTCCA	NA	False	NA	NA	False	NA	NA	NA	86049902	86045254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045418_86045789_86045900_86046346_86046483_86048552_86048734_86049004_86049109_86049814
53743	chr16	-	1508	9	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1172.26895378151	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	982	False	NA	NA	False	NA	NA	NA	11021167	11010833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011348_11012478_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
53744	chr11	-	3218	1	ISM	ENSMUSG00000020393.17	ENSMUST00000020662.15	4856	9	66789	0	43679	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGTGAGGCCAGGCTGT	7476	False	NA	NA	False	NA	NA	NA	5144769	5141551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5141600_5144800
53745	chr3	-	1368	12	ISM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	8352	-179	-4308	-14	3prime_fragment	FALSE	canonical	3	805	junction_4	48.5854448836836	10	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGCTCCTGAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	88850136	88830955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081
53746	chr3	+	2126	3	Intergenic	novelGene_3121	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	12.5	97	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTTTTGTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	51509212	51534606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_51509310_51532025_51532159_51532710
53747	chr14	+	1745	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73726	-5	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	47.8321896566208	43	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAACTCTTCACTCTAAGA	NA	False	NA	NA	False	NA	NA	NA	43169944	43251476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_43170061_43170454_43170526_43173393_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
53748	chr10	+	872	7	NIC	ENSMUSG00000061315.15	novel	885	8	NA	NA	-3	-73	intron_retention	FALSE	canonical	3	9741	junction_1	898.053589715001	4	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAACTACAGCTTGGTTT	4969	False	NA	NA	False	NA	NA	NA	127871500	127884429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127884237_127884361
53749	chr4	+	786	5	Antisense	novelGene_ENSMUSG00000028639.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTCAGGAGCGCTTTCC	1719	False	NA	NA	False	NA	NA	NA	119135177	119139458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_119135565_119136130_119136308_119136373_119136396_119138765_119138849_119139341
53750	chr2	+	2538	6	NNC	ENSMUSG00000015488.15	novel	2689	5	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	34.6641024692693	53	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGTCTGCCTGTCACC	NA	False	NA	NA	False	NA	NA	NA	26900029	26911102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26900118_26904104_26904178_26905495_26905622_26908384_26908493_26908899_26909516_26909575
53751	chr7	+	1574	16	NNC	ENSMUSG00000002963.18	novel	1770	17	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	94.0123868907118	1	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCACAGCCATCTTGCTG	9354	False	NA	NA	False	NA	NA	NA	44506601	44512072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44506677_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511695_44511775_44511852_44511922
53752	chr11	-	553	1	Antisense	novelGene_ENSMUSG00000020402.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACAATTTCATCTGGGG	4180	False	NA	NA	False	NA	NA	NA	52280224	52279671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_52279700_52280200
53753	chrX	+	3109	23	NNC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	35	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	123.520843424624	1	189	15	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATCTAAAAAGCCTGC	592	False	NA	NA	False	NA	NA	NA	20484058	20517107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512112_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516513_20516585_20516716_20516797
53754	chr2	+	1392	4	NNC	ENSMUSG00000035772.12	novel	2504	3	NA	NA	-4	-524	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	292.27080289044	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGTTCCATGTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	28358089	28360653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_28358155_28358254_28358423_28359449_28359783_28359827
53755	chr9	-	1936	7	Antisense	novelGene_ENSMUSG00000032387.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	103	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCGGCCCGCGAGTGCGC	8971	False	NA	NA	False	NA	NA	NA	65567807	65537863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_65538180_65556629_65556727_65557840_65557907_65558214_65558363_65558833_65558983_65566414_65566487_65566719
53757	chr9	+	3448	6	ISM	ENSMUSG00000042557.15	ENSMUST00000049169.6	4845	20	7849	24762	-818	5724	internal_fragment	FALSE	canonical	3	280	junction_2	7.41350119714026	12	129	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACCTCAAGGTCCCCCA	4185	False	NA	NA	False	NA	NA	NA	57001713	57010888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401
53759	chr16	-	1732	7	ISM	ENSMUSG00000022948.17	ENSMUST00000023669.14	1816	12	20	6358	8	1057	intron_retention	FALSE	canonical	3	18	junction_6	27.0985854489369	2	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGAATTTCTTTGTTGAA	NA	False	NA	NA	False	NA	NA	NA	93400671	93386702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024
53760	chr4	+	1250	6	NNC	ENSMUSG00000028899.12	novel	3787	6	NA	NA	-19	617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	197.430899304035	4	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAGTGTCCATAGGACCT	NA	False	NA	NA	False	NA	NA	NA	132001704	132020640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016700_132019213_132019263_132019937
53761	chr17	+	1121	5	NNC	ENSMUSG00000040771.15	novel	1135	6	NA	NA	17	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	390.022114757612	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTGCACACATGAACGTC	NA	False	NA	NA	False	NA	NA	NA	48717058	48724287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_48717266_48717852_48717933_48718291_48718437_48722248_48722362_48723711
53762	chr13	+	2429	13	NIC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	57	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	29.2546292633035	2	92	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119599376	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
53765	chrX	-	1377	8	NNC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	12	10	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	346.109396413496	50	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTGTGAGATGAGGG	NA	False	NA	NA	False	NA	NA	NA	95000507	94978930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94979256_94980977_94981129_94983904_94984158_94995669_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
53766	chr8	+	1980	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	7	122	0	-122	multi-exon	TRUE	canonical	0	0	junction_4	25.5774135055258	160	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGTAGTAGCATGTGGT	NA	False	NA	NA	False	NA	NA	NA	71941371	71945922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
53767	chr11	+	680	6	ISM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	1941	11	-854	4	3prime_fragment	FALSE	canonical	3	5433	junction_5	527.977499520576	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCTGAAACTGGCTTCT	NA	False	NA	NA	False	NA	NA	NA	48693124	48696904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
53768	chr13	+	1196	7	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	4	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	641.544858568406	51	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGATACTGTGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	49840872	49887731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846643_49887271
53769	chr11	+	2251	6	FSM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	-24	2108	4	-15	multi-exon	FALSE	canonical	3	280	junction_1	37.4197808652055	195	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGATTCTTAAAAAGTGGT	NA	False	NA	NA	False	NA	NA	NA	120839882	120849586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
53770	chr2	-	1338	2	FSM	ENSMUSG00000076437.12	ENSMUST00000154179.2	599	2	-11	-728	10	-1	multi-exon	FALSE	canonical	3	2216	junction_1	0	139	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGGAGCAAGTTTAAATT	379	False	NA	NA	False	NA	NA	NA	84501031	84499565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84500461_84500588
53771	chr5	-	2313	10	NIC	ENSMUSG00000037373.13	novel	2436	10	NA	NA	130	-14	combination_of_known_junctions	FALSE	canonical	3	693	junction_8	73.9275588033129	165	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGCCGGCACGCCTG	NA	False	NA	NA	False	NA	NA	NA	33432193	33405080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432122
53772	chr14	+	913	8	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1532.99751720448	5731	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	109	False	NA	NA	False	NA	NA	NA	101891421	101933561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
53773	chr19	+	1714	14	Antisense	novelGene_ENSMUSG00000041360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATTCTAGATCCAGATTC	NA	False	NA	NA	False	NA	NA	NA	27367452	27401738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_27367698_27371629_27371736_27373705_27373781_27376281_27376507_27377080_27377221_27389580_27389662_27393284_27393339_27394133_27394288_27397416_27397522_27398696_27398872_27399754_27399821_27400052_27400150_27400920_27400982_27401608
53774	chr8	-	2704	3	NNC	ENSMUSG00000055707.14	novel	2991	3	NA	NA	20246	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGAGCAGACCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	70908302	70902917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70903095_70903329_70905670_70908115
53775	chr6	+	2535	8	FSM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	11	996	11	21	multi-exon	FALSE	canonical	3	19	junction_2	10.7437689582647	62	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGTGTGTTGCATCTTG	NA	False	NA	NA	False	NA	NA	NA	39550817	39564707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929_39558026_39560744_39560997_39562660_39562790_39563774_39563829_39564302
53776	chr15	+	870	2	NNC	ENSMUSG00000022148.17	novel	569	4	NA	NA	-654	3008	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAGTATTATT	NA	False	NA	NA	False	NA	NA	NA	6683337	6684357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_6683680_6683829
53777	chr4	+	3324	3	FSM	ENSMUSG00000051351.15	ENSMUST00000130658.2	791	3	60	-2593	60	-1101	multi-exon	FALSE	canonical	3	10	junction_1	4	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACCCTTTTTGTTAAAG	NA	False	NA	NA	False	NA	NA	NA	136013474	136020152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_136013793_136014499_136014627_136017273
53778	chr9	+	1725	13	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	166	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	352.895040659716	1	71	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGAGTTTGGGTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	59446988	59472389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59461415_59461473_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
53780	chr5	-	4912	7	FSM	ENSMUSG00000015882.19	ENSMUST00000016026.14	4884	7	15	-43	3	-13	multi-exon	FALSE	canonical	3	22	junction_1	18.7349939951952	14	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAAGTAAACTTGACT	NA	False	NA	NA	False	NA	NA	NA	46014840	45887689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_45891828_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
53782	chr5	-	3461	19	Antisense	novelGene_ENSMUSG00000104814.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	32	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTCCGGTAGGAAACC	NA	False	NA	NA	False	NA	NA	NA	129648444	129578294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129578659_129581044_129581220_129581827_129581957_129584205_129584291_129590106_129590336_129591816_129591928_129593077_129593214_129616636_129616878_129618387_129618517_129619100_129619194_129620274_129620442_129626515_129626747_129627758_129627950_129631504_129631771_129636530_129636690_129637745_129637867_129646701_129646883_129647538_129647611_129648063
53783	chr2	+	2436	1	Antisense	novelGene_ENSMUSG00000078919.11_AS_novelGene_ENSMUSG00000093752.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGGTGGTGGTGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	168068500	168070936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_168068500_168070900
53784	chr9	+	1322	2	Genic_Genomic	ENSMUSG00000049932.4	novel	1384	1	NA	NA	7	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	172	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTAATGTTGAATGCT	5260	False	NA	NA	False	NA	NA	NA	44245997	44247374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_44246717_44246771
53786	chr14	-	2097	13	ISM	ENSMUSG00000051506.18	ENSMUST00000130509.10	10158	62	198400	21	36671	-21	3prime_fragment	FALSE	canonical	2	4	junction_12	4.80378901377745	53	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGGCTGCTTGAGCGTT	NA	False	NA	NA	False	NA	NA	NA	32708623	32681524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_32681962_32682698_32682811_32686495_32686581_32688320_32688504_32689429_32689610_32692779_32692939_32693534_32693720_32695492_32695644_32696111_32696325_32697111_32697204_32699046_32699201_32707613_32707724_32708587
53787	chr8	+	3150	6	Antisense	novelGene_ENSMUSG00000031539.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGCTGCGCAGTGCTCCTT	6729	False	NA	NA	False	NA	NA	NA	23279290	23295637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_23279474_23280899_23283166_23287095_23287235_23289655_23289828_23293774_23294118_23295590
53793	chr12	-	2238	14	NNC	ENSMUSG00000021240.7	novel	2581	19	NA	NA	1282	-11	intron_retention	FALSE	canonical	0	0	junction_11	95.4442741470415	1	112	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTTTCTTCTACAATAGA	NA	False	NA	NA	False	NA	NA	NA	84660879	84649317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84653083_84655343_84655434_84655579_84655643_84655748_84655871_84656152_84656289_84659096_84659220_84659553_84659671_84660678
53794	chr10	+	1644	12	NNC	ENSMUSG00000019794.14	novel	1774	11	NA	NA	75	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	194.794742576737	1	37	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGTGCTATATTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	7601846	7638828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7601892_7602382_7602425_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624659_7627307_7627414_7628507_7628667_7635465_7635588_7636498_7636634_7637006_7637134_7638553
53795	chr7	-	468	1	NIC	ENSMUSG00000053158.11	novel	3371	17	NA	NA	1402	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGATATTGACATGTGTG	NA	False	NA	NA	False	NA	NA	NA	80027976	80027508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80027500_80028000
53796	chr18	+	1629	7	NNC	ENSMUSG00000036743.5	novel	1692	7	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	47.747309406453	6	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTATAGAGTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	14839242	14895351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_14839390_14859560_14859686_14864035_14864159_14888908_14889012_14890338_14890459_14890678_14890742_14894403
53797	chr17	+	806	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	2	351	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	3748.28990174186	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6869192	6875299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874670_6874899
53798	chr11	+	738	3	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	23635	-9996	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGCGCGGCTACCCAAG	7257	False	NA	NA	False	NA	NA	NA	32562229	32564591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_32562751_32563436_32563587_32564524
53799	chr17	-	1156	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	28	-1	28	1	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	3	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTGTGTTCTGGCGCT	NA	False	NA	NA	False	NA	NA	NA	24388407	24382838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
53800	chrX	-	2335	10	FSM	ENSMUSG00000050379.16	ENSMUST00000060474.14	3457	10	194	928	29	-928	multi-exon	TRUE	canonical	3	7	junction_1	15.297865581774	19	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGCTCAGTGGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	36253115	36175906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36176908_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
53801	chr5	+	3311	11	ISM	ENSMUSG00000029458.15	ENSMUST00000111765.8	3861	12	1266	1	55	1	3prime_fragment	TRUE	canonical	3	111	junction_5	19.2343442830786	27	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGAGTTACGTTTGAGTC	2479	False	NA	NA	False	NA	NA	NA	121800197	121825307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121800225_121801358_121801555_121803161_121803352_121810147_121810262_121813292_121813442_121816826_121816903_121817273_121817413_121817879_121817990_121820842_121820933_121822433_121822538_121823191
53803	chr15	-	3017	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	-2	2061	-2	-2061	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	2	103	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTATGTTTTACAACCATA	2178	False	NA	NA	False	NA	NA	NA	4025228	4013577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
53804	chr4	-	1422	9	NIC	ENSMUSG00000028684.15	novel	1489	10	NA	NA	5	-1	intron_retention	FALSE	canonical	3	335	junction_8	15.5678956509864	96	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTAGCATGTTCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	116851572	116847414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850508_116850584_116850665_116850781_116850895_116851527
53805	chr9	+	556	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	147	-213	147	213	mono-exon	FALSE	NA	NA	NA	NA	NA	174	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	96777857	96778413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777900_96778400
53806	chr13	-	431	4	FSM	ENSMUSG00000078995.11	ENSMUST00000172266.8	679	4	35	213	35	-213	multi-exon	FALSE	canonical	0	0	junction_1	11.0855260988773	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGACGACCCTCTAAGG	2263	False	NA	NA	False	NA	NA	NA	67523894	67510444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67510567_67520295_67520392_67520869_67520997_67523808
53807	chr10	+	1615	12	Antisense	novelGene_ENSMUSG00000025403.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	75	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTAGAACGCGTGCGC	NA	False	NA	NA	False	NA	NA	NA	127353490	127358258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_127353789_127353896_127353976_127354109_127354253_127354342_127354450_127354669_127354831_127354993_127355085_127355245_127355389_127355511_127355581_127355839_127355986_127356208_127356287_127356786_127356985_127358156
53809	chr11	+	3186	6	NNC	ENSMUSG00000049811.18	novel	2034	5	NA	NA	18	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	6.85273667960473	6	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGTTTGGTTGGTAATT	NA	False	NA	NA	False	NA	NA	NA	22958482	22980786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22958632_22965654_22965885_22969999_22971134_22973432_22973530_22978855_22979011_22979365
53810	chr15	+	2060	7	NNC	ENSMUSG00000068114.8	novel	2046	7	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	16.9156403629567	156	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAAACTATGTCTTTGGC	NA	False	NA	NA	False	NA	NA	NA	82012191	82026397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82012251_82014252_82014372_82015624_82015747_82015945_82016031_82018781_82018964_82019180_82019343_82025066
53811	chr1	-	850	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	14	-18	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	603.535210240463	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAAAAATATATCTCACG	2352	False	NA	NA	False	NA	NA	NA	93729614	93720315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729512
53812	chr7	+	1236	6	FSM	ENSMUSG00000075701.11	ENSMUST00000101801.8	1191	6	-45	0	-45	0	multi-exon	FALSE	canonical	3	410	junction_5	18.3804243694209	1141	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTCTCTGGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	65729351	65739153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
53814	chr2	+	1669	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	113	2679	44	0	multi-exon	FALSE	canonical	3	230	junction_10	26.4695873268632	2	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTAGTTGTTAACAAT	1100	False	NA	NA	False	NA	NA	NA	3285361	3327235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
53815	chr1	+	2348	13	ISM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	30352	-9	-2028	9	3prime_fragment	FALSE	canonical	3	400	junction_4	25.7427174167763	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATTTCGAATATATGCCT	7555	False	NA	NA	False	NA	NA	NA	78665951	78684693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
53816	chr17	-	2328	17	FSM	ENSMUSG00000024174.10	ENSMUST00000086876.7	3523	17	-9	1204	-9	-1204	multi-exon	FALSE	canonical	1	2	junction_7	6.91804705101086	58	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAACCCAGATTTTCATT	NA	False	NA	NA	False	NA	NA	NA	56019587	55960154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_55960519_55961766_55961873_55969462_55969555_55971316_55971406_55972647_55972784_55973411_55973618_55976739_55976897_55979830_55979894_55981051_55981141_55994788_55994959_55999721_55999878_56002026_56002318_56005456_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
53817	chr3	+	965	6	Antisense	novelGene_ENSMUSG00000000563.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGCTCGCACATCTCGCG	NA	False	NA	NA	False	NA	NA	NA	105850019	105866579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_105850382_105851004_105851183_105858906_105859035_105863213_105863357_105866176_105866215_105866463
53818	chr1	+	3828	33	NNC	ENSMUSG00000064294.13	novel	4606	35	NA	NA	20	-12225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	9.53918726884005	1	154	17	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCACTGTTGACACCAACC	NA	False	NA	NA	False	NA	NA	NA	58152316	58227632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58152472_58154029_58154088_58157756_58157854_58158639_58158749_58160136_58160264_58164176_58164239_58166785_58166867_58177374_58177456_58180509_58180655_58181828_58181922_58185582_58185735_58186352_58186447_58189453_58189564_58191712_58191898_58192179_58192343_58192638_58192732_58197359_58197530_58198063_58198179_58198795_58198919_58202507_58202605_58204995_58205117_58206761_58206900_58208945_58209025_58209815_58209903_58210900_58211093_58211279_58211508_58215632_58215729_58216677_58216807_58218475_58218551_58219764_58219818_58222624_58222740_58225435_58225502_58227493
53819	chr10	+	2740	15	Antisense	novelGene_ENSMUSG00000006342.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	69	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTCTGCAACCAGCAG	NA	False	NA	NA	False	NA	NA	NA	75472850	75479784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_75473204_75473333_75473439_75473510_75473696_75473801_75474069_75474179_75474429_75475174_75475334_75475427_75475596_75475750_75475941_75476025_75476109_75476289_75476480_75476600_75476784_75477265_75477438_75477961_75478114_75478300_75478506_75479705
53821	chr4	+	2653	16	NNC	ENSMUSG00000006215.13	novel	2722	16	NA	NA	-9	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	56.3380274178404	1	127	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAATAAATGATTATTTT	NA	False	NA	NA	False	NA	NA	NA	141171985	141194512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174649_141189096_141189287_141189845_141190028_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
53822	chr12	+	1646	1	Intergenic	novelGene_4442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTTATATAATATTTTTG	NA	False	NA	NA	False	NA	NA	NA	91557759	91559405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_91557800_91559400
53823	chr1	-	2444	6	NNC	ENSMUSG00000040124.6	novel	2538	5	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.9198930479372	3	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACAGTATGGTCTGTCA	NA	False	NA	NA	False	NA	NA	NA	163231224	163212481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_163213324_163213398_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
53824	chr5	+	950	1	NIC	ENSMUSG00000106918.4	novel	2045	4	NA	NA	-726	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	10	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACTTTATCAGAGAAATA	NA	False	NA	NA	False	NA	NA	NA	31811242	31812192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31811200_31812200
53825	chr17	+	1629	8	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTACTGCGCTTGCGCAGC	NA	False	NA	NA	False	NA	NA	NA	47085449	47093572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_47085847_47086191_47086661_47088975_47089203_47089339_47089446_47090210_47090351_47091317_47091480_47092716_47092816_47093543
53826	chr18	-	3660	3	NNC	ENSMUSG00000024613.17	novel	3229	20	NA	NA	4630	-1573	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	649	65	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCGTGGAAACACTCCCCA	NA	False	NA	NA	False	NA	NA	NA	60957469	60952674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60953301_60953396_60954837_60955875
53827	chr8	+	1310	9	Antisense	novelGene_ENSMUSG00000008892.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTCTCGAACCAACGCCG	4668	False	NA	NA	False	NA	NA	NA	23067120	23083748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_23067618_23068057_23068116_23069006_23069158_23070354_23070586_23072099_23072154_23073601_23073752_23077567_23077618_23078740_23078811_23083699
53828	chr6	+	1905	1	Antisense	novelGene_ENSMUSG00000058486.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	754	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAAGGACCCACATCA	7901	False	NA	NA	False	NA	NA	NA	34881299	34883204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_34881300_34883200
53829	chr6	-	3002	11	NIC	ENSMUSG00000030272.16	novel	1496	12	NA	NA	8	-3	intron_retention	FALSE	canonical	3	50	junction_1	8.21948903521381	50	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACAGTTCCGTTTGCTC	5822	False	NA	NA	False	NA	NA	NA	113320916	113311091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113311370_113311474_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
53830	chr5	-	2591	1	Antisense	novelGene_ENSMUSG00000019054.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCCAGCCTGGAGG	4518	False	NA	NA	False	NA	NA	NA	136983343	136980752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_136980800_136983300
53831	chr9	-	1286	6	NNC	ENSMUSG00000042396.11	novel	1867	6	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.252623297813	18	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	48406605	48400008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_48400069_48400555_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
53833	chr6	-	892	1	ISM	ENSMUSG00000030313.16	ENSMUST00000111557.8	9831	21	112712	6	28220	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATACTTTGTTGTTTTGT	5715	False	NA	NA	False	NA	NA	NA	148890466	148889574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_148889600_148890500
53835	SIRV4	+	1270	4	NNC	SIRV4C	novel	1567	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	485.873097286387	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	999	3403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV4_+_1347_1678_1886_2389_2948_3245
53836	chr6	-	1828	6	ISM	ENSMUSG00000029847.14	ENSMUST00000201355.4	2003	12	33274	-641	773	-16	3prime_fragment	FALSE	canonical	3	8	junction_1	1.67332005306815	47	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAACAAACAAACAAACTAG	NA	False	NA	NA	False	NA	NA	NA	34932065	34922228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_34923272_34925142_34925239_34925332_34925442_34925739_34925905_34930699_34930954_34931904
53838	chr3	+	1536	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	-10	1	-10	-1	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	160	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTTTATTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	86893847	86897086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
53839	chr11	-	2503	9	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	26010	2373	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.56229574945264	1	80	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATACTGGACTCGGGTGG	NA	False	NA	NA	False	NA	NA	NA	95779707	95754395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95755694_95756827_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632
53840	chr11	-	3159	10	FSM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	29	5	0	-5	multi-exon	FALSE	canonical	1	16	junction_4	19.8612470857816	105	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTGCCTCTGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	120269561	120260392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
53843	chr16	-	1496	11	Antisense	novelGene_ENSMUSG00000022946.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	22	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGAACTGGGCGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	93554048	93508826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_93508956_93513036_93513204_93536042_93536230_93536856_93537026_93544349_93544541_93546010_93546108_93546777_93546898_93549007_93549120_93549720_93549830_93552328_93552457_93553961
53844	chr3	+	1401	14	NIC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	1	186	combination_of_known_splicesites	FALSE	canonical	3	4	junction_9	88.4446806679833	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATATAGTGTGTTATTAA	NA	False	NA	NA	False	NA	NA	NA	95466989	95495168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
53845	chr2	+	1132	1	Intergenic	novelGene_2763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGGAGGGGAGGGGAAGG	2658	False	NA	NA	False	NA	NA	NA	160890835	160891967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_160890800_160892000
53846	chr2	-	2554	8	FSM	ENSMUSG00000037773.15	ENSMUST00000110277.2	1689	8	-102	-763	-88	5	multi-exon	FALSE	canonical	0	0	junction_7	13.0868371321129	53	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAGAATTTTGATAATTT	7546	False	NA	NA	False	NA	NA	NA	130266709	130260115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331_130265473_130266412
53847	chr12	+	2411	2	ISM	ENSMUSG00000044712.16	ENSMUST00000134247.2	725	5	18420	125	-7318	-125	internal_fragment	FALSE	canonical	2	6	junction_1	0	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCCAGAGTGCCCTTCT	NA	False	NA	NA	False	NA	NA	NA	73383822	73386638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_73383879_73384283
53848	chr1	-	1845	4	FSM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	110	29	110	-29	multi-exon	FALSE	canonical	3	64	junction_2	6.37704215656966	1	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATATCGGAACAAAA	NA	False	NA	NA	False	NA	NA	NA	190915427	190902521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_190903877_190904571_190904680_190909427_190909672_190915289
53849	chr8	+	3076	6	NIC	ENSMUSG00000031631.16	novel	4619	5	NA	NA	-6	-1596	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	20.9990475974507	26	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCTTAAAATATGAGTTT	NA	False	NA	NA	False	NA	NA	NA	46616765	46647027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_46616787_46617798_46617934_46622595_46623690_46634754_46635024_46644616_46644768_46645621
53850	chr5	-	1165	1	ISM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	10087	3947	2954	1178	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTCCAGCCTGCAGCAA	NA	False	NA	NA	False	NA	NA	NA	115286151	115284986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_115285000_115286200
53851	chr3	+	1321	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	-29	3	-9	-3	multi-exon	FALSE	canonical	3	124	junction_3	73.5090697351921	1269	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAATGAGCTCTGTATAGG	51	False	NA	NA	False	NA	NA	NA	137624257	137634523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
53853	chr8	+	1637	1	Antisense	novelGene_ENSMUSG00000019732.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGTGTTTTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	73192345	73193982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_73192300_73194000
53855	chr19	+	855	3	ISM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	2190	1	2110	-1	intron_retention	FALSE	canonical	3	6173	junction_2	53.5	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACATGGCTTTTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	5542702	5544056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5542833_5543182_5543260_5543408
53856	chrX	+	1139	7	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	702.017667552289	33	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTGTTGCCTGACAAT	NA	False	NA	NA	False	NA	NA	NA	74557910	74578539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513_74577836_74578276
53857	chr2	-	1185	6	ISM	ENSMUSG00000033096.8	ENSMUST00000046399.7	2235	9	17	3508	-6	533	5prime_fragment	FALSE	canonical	3	74	junction_4	12.3709336753537	1	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTACCCTTCCCAAAGCC	1016	False	NA	NA	False	NA	NA	NA	150450470	150428507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
53858	chr8	+	650	1	NIC	ENSMUSG00000031533.5	novel	1515	7	NA	NA	0	-14149	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCCATTGAGGAGGTGA	NA	False	NA	NA	False	NA	NA	NA	22901413	22902063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_22901400_22902100
53859	chr14	-	2215	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	9	2	-8	-2	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	224	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGCTGGCAACACCCAGG	NA	False	NA	NA	False	NA	NA	NA	14466862	14413011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
53860	chr19	-	1378	8	NNC	ENSMUSG00000010095.14	novel	1393	8	NA	NA	1	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1088.78985435151	15	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	8690348	8684933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685588_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
53861	chr8	+	1270	9	ISM	ENSMUSG00000033862.8	ENSMUST00000212193.2	1638	13	-18	1375	-2	260	intron_retention	FALSE	canonical	1	10	junction_5	82.9238166933964	3	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAGGCCGGACTCCGTCT	2135	False	NA	NA	False	NA	NA	NA	123951590	123957614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954505_123955067_123955136_123955586_123955640_123955850_123955921_123957006
53862	chr14	+	1330	1	ISM	ENSMUSG00000021846.10	ENSMUST00000073150.6	5900	6	138479	257	60586	-257	mono-exon	FALSE	NA	NA	NA	NA	NA	30	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTCAAAAGCTATTAAACA	NA	False	NA	NA	False	NA	NA	NA	48496758	48498088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_48496800_48498100
53864	chr9	+	2426	1	Antisense	novelGene_ENSMUSG00000032449.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTGTTTTTAAATAT	NA	False	NA	NA	False	NA	NA	NA	96977433	96979859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_96977400_96979900
53866	chr4	-	1342	9	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4463.29216358284	6	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	NA	NA	NA	119151697	119135177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139531_119139582_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151530
53868	chr18	+	1464	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	266	212	266	-212	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATAAATTGTTCAGCTGT	NA	False	NA	NA	False	NA	NA	NA	56706159	56720572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
53869	chr2	-	3915	4	ISM	ENSMUSG00000075284.11	ENSMUST00000102679.8	2039	8	16291	-2534	15022	-3	3prime_fragment	FALSE	canonical	3	52	junction_1	2.16024689946929	52	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGACTTGTGGCTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	73268032	73259956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297
53871	chr2	-	2974	11	FSM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	25	789	7	-789	multi-exon	FALSE	canonical	3	23	junction_8	5.37028863283902	1	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGCTTCCTCTCTAACC	9054	False	NA	NA	False	NA	NA	NA	13549454	13514613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
53872	chr9	+	1955	10	ISM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	101	30387	69	-30387	5prime_fragment	FALSE	canonical	3	295	junction_2	41.9046536795139	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTCAATTATATGATGGC	NA	False	NA	NA	False	NA	NA	NA	114230244	114273058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076
53873	chr7	+	3069	8	NNC	ENSMUSG00000053198.15	novel	4841	7	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	15.3516601508682	2	81	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCATGTGTCTTGGTTC	1768	False	NA	NA	False	NA	NA	NA	27198755	27219463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27198791_27203957_27204002_27204089_27204189_27204304_27204432_27207371_27207529_27214675_27214873_27215464_27217109_27218697
53874	chr11	-	2702	4	NIC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	-9	124	intron_retention	FALSE	canonical	3	39	junction_3	9.7410927974683	9	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTACTCTACCTTCAGAA	NA	False	NA	NA	False	NA	NA	NA	84719829	84711557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_84712295_84712490_84713993_84716193_84716404_84719576
53875	chr1	-	792	2	Genic_Genomic	ENSMUSG00000089782.2	novel	489	1	NA	NA	-113	244	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATGTA	8430	False	NA	NA	False	NA	NA	NA	97877227	97876381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_97876741_97876794
53876	chr9	-	1319	14	NIC	ENSMUSG00000023262.14	novel	1832	14	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_11	129.30085096074	37	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	106315427	106310189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106314087_106314153_106314827_106314933_106315331
53877	chr6	-	1166	8	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	71	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2550.413619916	2	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTATAACAGTGTCTCG	NA	False	NA	NA	False	NA	NA	NA	125471683	125437243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439438_125440669_125440723_125441352_125441448_125449371_125449475_125471536
53878	chr7	-	2108	6	ISM	ENSMUSG00000030708.15	ENSMUST00000154516.3	905	7	3000	-1364	-15	-1	3prime_fragment	FALSE	canonical	3	47	junction_4	7.5736384915046	173	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTACTGTGCCATACAC	NA	False	NA	NA	False	NA	NA	NA	100161003	100150923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100159901_100160064_100160956
53880	chr7	+	1317	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-31	20	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	575	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGTTGTTCTAGTT	9849	False	NA	NA	False	NA	NA	NA	49408831	49423743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
53881	chr1	+	1605	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	16	-1	16	1	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	496	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTGTTTCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	180762602	180765966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
53882	chr6	+	1395	11	Antisense	novelGene_ENSMUSG00000004980.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGCCGCTGGAGCCGAGA	7211	False	NA	NA	False	NA	NA	NA	51440039	51446821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_51440249_51440400_51440473_51441067_51441178_51441394_51441530_51442161_51442225_51443124_51443202_51443281_51443385_51443474_51443693_51443899_51444033_51444171_51444276_51446650
53883	chr14	+	3210	16	ISM	ENSMUSG00000042323.18	ENSMUST00000090214.11	6212	30	24673	9472	22706	-3376	internal_fragment	FALSE	canonical	3	74	junction_15	37.4204934939845	3	16	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTTGCAGGTAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	30772140	30832526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30772209_30774136_30774279_30776114_30776213_30783425_30783703_30786702_30786809_30789278_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30832371
53886	chr9	+	1861	4	FSM	ENSMUSG00000043289.13	ENSMUST00000189391.2	1817	4	-40	-4	-1	4	multi-exon	FALSE	canonical	0	0	junction_1	20.6774165590278	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTGGTTGAATTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	81745721	81908515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_81745971_81809150_81809687_81861178_81861311_81907571
53887	chr2	+	1335	10	ISM	ENSMUSG00000033411.17	ENSMUST00000036647.13	5053	13	485	9425	0	254	5prime_fragment	FALSE	canonical	3	334	junction_9	45.3344226448646	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGGCCATTTGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	121786966	121834698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548
53888	chr4	-	1578	2	FSM	ENSMUSG00000028636.15	ENSMUST00000140641.2	1543	2	-40	5	22	-5	multi-exon	FALSE	canonical	3	317	junction_1	0	474	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAAGGGCGGGTTTCTGGT	5527	False	NA	NA	False	NA	NA	NA	119279595	119275731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_119276491_119278776
53889	chr18	+	2585	1	Intergenic	novelGene_4559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTTAATGTATATGAG	NA	False	NA	NA	False	NA	NA	NA	67444979	67447564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_67445000_67447600
53890	chr3	-	1824	5	FSM	ENSMUSG00000027679.14	ENSMUST00000117223.4	1695	5	-50	-79	0	-1	multi-exon	FALSE	canonical	3	3089	junction_2	271.507366382572	46	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATCAGTGTCTTGGTAT	NA	False	NA	NA	False	NA	NA	NA	34135461	34131503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
53891	chr6	-	1763	9	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	20	-384	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	786.575161300559	1	76	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCACAAAGAGGAGCAGGA	8976	False	NA	NA	False	NA	NA	NA	47790278	47773458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775298_47775533_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785269_47790150
53892	chr18	+	1389	9	NNC	ENSMUSG00000024525.8	novel	5054	8	NA	NA	55	1933	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	488.075413614536	142	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGGTCTTCCTCCAGCC	NA	False	NA	NA	False	NA	NA	NA	67422376	67451912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67422577_67428028_67428115_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
53893	chr10	-	3807	8	FSM	ENSMUSG00000019861.16	ENSMUST00000020008.10	4216	8	371	38	14	-30	multi-exon	FALSE	canonical	3	117	junction_5	13.2125481483107	77	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAAATAAATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	52257800	52213185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_52215950_52222144_52222326_52225167_52225333_52226696_52226793_52229422_52229589_52230667_52230844_52234868_52235034_52257706
53894	chr3	-	548	2	ISM	ENSMUSG00000058135.13	ENSMUST00000153314.8	883	5	1735	-47	-1549	47	3prime_fragment	FALSE	canonical	3	698	junction_1	0	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTCAATACTTGAGTGC	9691	False	NA	NA	False	NA	NA	NA	107922181	107919659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_107920095_107922068
53895	chrX	+	2595	1	NIC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	192	279	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTATTTATTTATAAGA	NA	False	NA	NA	False	NA	NA	NA	143119681	143122276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143119700_143122300
53898	chr2	-	4581	10	Antisense	novelGene_ENSMUSG00000027087.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	97	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACACCACCTGCCGAGTT	NA	False	NA	NA	False	NA	NA	NA	83637258	83622955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_83622983_83624572_83624656_83625260_83625343_83625781_83625887_83626427_83626587_83627692_83627796_83632112_83632228_83632321_83632429_83633221_83633346_83633582
53900	chr7	-	1304	5	NNC	ENSMUSG00000040139.15	novel	699	5	NA	NA	4	3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	92.2506775042872	577	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCTGGCTTGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	137012481	136977299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_136978081_136978661_136978847_136989099_136989163_136989268_136989431_137012368
53901	chrX	+	925	6	FSM	ENSMUSG00000062170.13	ENSMUST00000071848.7	842	6	-89	6	6	-6	multi-exon	FALSE	canonical	3	35	junction_2	319.056484027515	3655	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAATCTGGATTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	67805450	67848167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_67805838_67807537_67807616_67812561_67812700_67815650_67815748_67847210_67847300_67848031
53902	chr9	+	2164	15	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	23	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	119.68958575739	1	105	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGGTCCTGTCATTAAT	NA	False	NA	NA	False	NA	NA	NA	114230198	114303446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266921_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
53904	chr13	-	4176	1	NIC	ENSMUSG00000034751.18	novel	5968	27	NA	NA	34400	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	36	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAAGATGACTTGCGTGT	NA	False	NA	NA	False	NA	NA	NA	102873177	102869001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_102869000_102873200
53906	chr16	+	1454	7	NIC	ENSMUSG00000022849.6	novel	1703	8	NA	NA	4	-129	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	219.921008546251	3	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACTTTTAAAATATATTT	5440	False	NA	NA	False	NA	NA	NA	35590780	35645789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35645058_35645170_35645252
53908	chr5	+	1462	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	-43	1	16	-1	multi-exon	FALSE	canonical	3	27	junction_6	172.72618021983	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAGTTTCATACAGACG	NA	False	NA	NA	False	NA	NA	NA	100187859	100216618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
53909	chr7	-	1968	7	NNC	ENSMUSG00000030689.16	novel	719	7	NA	NA	4	1	intron_retention	FALSE	non_canonical	0	0	junction_1	457.307943901651	2	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGTTTTGTGCTTGGAT	9176	False	NA	NA	False	NA	NA	NA	126461028	126450755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126452170_126456397_126456464_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460740_126460876
53910	chr1	-	1786	15	Antisense	novelGene_ENSMUSG00000102698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGGCTGCGACTCGAAC	NA	False	NA	NA	False	NA	NA	NA	140435588	140173768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_140174088_140278943_140279026_140282191_140282291_140290685_140290734_140293260_140293321_140302843_140302921_140304090_140304175_140310738_140310833_140352929_140353110_140354563_140354746_140356555_140356684_140359107_140359172_140377933_140378041_140411860_140411972_140435437
53912	chr8	-	1477	7	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38828	-4	at_least_one_novel_splicesite	FALSE	canonical	3	117	junction_6	46.881647676771	298	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGTCTGTTTATTGCTT	NA	False	NA	NA	False	NA	NA	NA	43633351	43582847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43595725_43595759_43633233
53913	chr9	+	2856	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	47	942	19	-594	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	1	161	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTAGAGTAAAAAGATCTC	NA	False	NA	NA	False	NA	NA	NA	119723990	119754710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
53917	chr16	+	1672	8	NNC	ENSMUSG00000022871.14	novel	1572	8	NA	NA	461	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	207.736685764082	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGCTTCTTGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	22737709	22758497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22738102_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
53918	chr3	-	1695	5	NNC	ENSMUSG00000027534.17	novel	2512	7	NA	NA	40	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	72.624031835199	3	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCAAGTTCAGTTGGGTG	NA	False	NA	NA	False	NA	NA	NA	10505107	10483217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_10484126_10499477_10499567_10500501_10500593_10502870_10503345_10504974
53919	chr4	+	3909	24	ISM	ENSMUSG00000052407.18	ENSMUST00000231339.2	4549	26	46	69341	-23	-3347	5prime_fragment	FALSE	canonical	1	1	junction_18	3.95245849647426	17	41	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTTAGAGCCTAAATAACA	8735	False	NA	NA	False	NA	NA	NA	83443827	83713566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_83444008_83454026_83454175_83465070_83465207_83467839_83468015_83472930_83473122_83476135_83476268_83498984_83499132_83519844_83519938_83522258_83522420_83539061_83539201_83553876_83553980_83573764_83573872_83575548_83575639_83576557_83576759_83579952_83580121_83581738_83581928_83599241_83599747_83600535_83600653_83611983_83612211_83612489_83612673_83614487_83614674_83661164_83661311_83670090_83670146_83713436
53921	chr7	+	1445	9	ISM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	1494	11	-135	-6	3prime_fragment	FALSE	canonical	3	336	junction_3	22.7705950734714	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTCTCCCCAGCTCCAGA	NA	False	NA	NA	False	NA	NA	NA	44805231	44809477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
53923	chr19	-	1094	8	NNC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-5	30	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_6	317.627107772364	2043	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATATAGTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	41921742	41911974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921448_41921604_41921690
53924	chr1	+	2502	3	Antisense	novelGene_ENSMUSG00000026112.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	115	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAAGCTACCGGCGAGGGT	NA	False	NA	NA	False	NA	NA	NA	37457473	37469132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_37459709_37467422_37467509_37468951
53925	chr17	+	2211	18	FSM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	-42	77	-42	3	multi-exon	FALSE	non_canonical	1	4	junction_1	7.17888098382546	248	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATGGCTTTATTTTCAG	78	False	NA	NA	False	NA	NA	NA	35136652	35149335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35136853_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
53926	chr11	+	1439	4	NIC	ENSMUSG00000018858.16	novel	2596	6	NA	NA	1	-5	intron_retention	FALSE	canonical	3	1064	junction_1	27.1825107171668	27	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAGCCTGTTTCCAGTGA	NA	False	NA	NA	False	NA	NA	NA	115294583	115301740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115294787_115297376_115297414_115300305_115301228_115301463
53927	chr9	-	2659	19	NNC	ENSMUSG00000046111.19	novel	7188	27	NA	NA	56	-1035	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_13	51.185091386525	1	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCGTACTATTTGGTGT	9763	False	NA	NA	False	NA	NA	NA	15269028	15237935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15246345_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255557_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
53928	chr10	-	1550	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	9	8	9	-8	multi-exon	FALSE	canonical	3	41	junction_2	4.5	220	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGGAACTATTATTCCAA	NA	False	NA	NA	False	NA	NA	NA	84963882	84955304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_84956679_84962231_84962351_84963825
53929	chr5	+	2399	6	FSM	ENSMUSG00000049327.18	ENSMUST00000198451.2	1032	6	131	-1498	131	-22	multi-exon	FALSE	canonical	3	722	junction_5	46.3163038248952	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTGCCAGGCAAGGC	6233	False	NA	NA	False	NA	NA	NA	124585392	124600349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124585434_124588723_124588944_124589348_124589437_124595121_124595182_124597837_124598029_124598550
53930	chr15	+	2050	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	0	5	0	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	249	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATCTGAGTGGTGCGTT	1147	False	NA	NA	False	NA	NA	NA	78912649	78914699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78912600_78914700
53931	chr2	-	1934	1	NIC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	9	848	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTAGGGAGGAGGGTCCA	NA	False	NA	NA	False	NA	NA	NA	152185943	152184009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152184000_152185900
53932	chr14	+	2419	6	ISM	ENSMUSG00000023411.13	ENSMUST00000226357.2	2680	10	3563	-306	-105	0	intron_retention	FALSE	canonical	3	29	junction_2	5.62138772902208	39	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGCTCCAGAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	56066820	56071400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_56067022_56067350_56067524_56067912_56068054_56069109_56069166_56069404_56069532_56069679
53933	chr10	-	1363	9	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	184.605957040936	1	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5841	False	NA	NA	False	NA	NA	NA	62859613	62851206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851475_62851854_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859416
53934	chr5	+	2912	2	ISM	ENSMUSG00000007812.17	ENSMUST00000085661.9	597	4	-15	1020	-13	-1020	intron_retention	FALSE	canonical	3	447	junction_1	0	15	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCCCTAGCTGGACTCTG	1318	False	NA	NA	False	NA	NA	NA	145168551	145173072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_145168642_145170250
53935	chr6	-	2034	3	ISM	ENSMUSG00000032641.19	ENSMUST00000165392.8	1643	4	62	65	62	-1	intron_retention	FALSE	canonical	3	78	junction_2	8	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAGAATTGATTTACTTA	NA	False	NA	NA	False	NA	NA	NA	134874716	134846120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_134847407_134864592_134864749_134874124
53936	chr5	-	2884	4	FSM	ENSMUSG00000105402.5	ENSMUST00000198582.5	2879	4	-16	11	-16	-11	multi-exon	FALSE	canonical	3	10	junction_2	4.89897948556636	90	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCATTTGTTGTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	64768059	64751210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_64753667_64759324_64759493_64767442_64767499_64767855
53937	chr10	-	2207	7	NNC	ENSMUSG00000059554.13	novel	1190	6	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_2	27.7968823191858	25	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCATCTCTGTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	18110707	18089429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_18089927_18092007_18092031_18093080_18094141_18095235_18095391_18100644_18100809_18106166_18106367_18110599
53938	chr10	+	685	6	ISM	ENSMUSG00000019823.18	ENSMUST00000099934.11	3292	23	8657	394	951	-82	internal_fragment	FALSE	canonical	3	163	junction_1	28.7791591260064	1	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGTTGCGGGGCTACATGA	NA	False	NA	NA	False	NA	NA	NA	41361020	41362634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589
53939	chr6	+	2107	11	FSM	ENSMUSG00000030166.15	ENSMUST00000161816.8	1603	11	-10	-494	-10	175	multi-exon	FALSE	canonical	3	22	junction_8	12.9769025580067	11	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATGGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	119879678	119898770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767
53940	chrX	-	1875	9	FSM	ENSMUSG00000031399.16	ENSMUST00000114143.10	1899	9	22	2	5	-2	multi-exon	FALSE	canonical	3	109	junction_1	16.2322017915007	392	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGAGAGTCAAGGGTGG	NA	False	NA	NA	False	NA	NA	NA	73436856	73428326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
53941	chr17	+	2122	7	NNC	ENSMUSG00000024044.20	novel	3952	20	NA	NA	2826	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	29.7825452236709	54	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTCTCGTCTTCCATGT	NA	False	NA	NA	False	NA	NA	NA	69591534	69596981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69594917_69595098_69595845
53944	chr5	+	1567	9	NNC	ENSMUSG00000025538.16	novel	2264	9	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	159.675011742602	7	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGATTTATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	129875828	129892270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129875928_129878741_129878899_129881714_129881753_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
53946	chr13	-	2934	1	FSM	ENSMUSG00000076431.5	ENSMUST00000067230.6	4795	1	1861	0	1861	0	mono-exon	FALSE	NA	NA	NA	NA	NA	61	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTTTTGTCATCCTT	NA	False	NA	NA	False	NA	NA	NA	29135835	29132901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_29132900_29135800
53948	chr13	-	1090	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	2	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314335	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311616_34311716_34312219_34314159
53949	chr3	-	3471	14	FSM	ENSMUSG00000028149.13	ENSMUST00000029796.11	3383	14	-94	6	-16	-6	multi-exon	FALSE	canonical	3	34	junction_10	15.970386796752	65	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAACTACAGTGAGATTA	NA	False	NA	NA	False	NA	NA	NA	138780925	138631676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_138633474_138647490_138647620_138651423_138651551_138661082_138661223_138661954_138662081_138663170_138663306_138664314_138664447_138664796_138664941_138669585_138669712_138671628_138671758_138721306_138721433_138727573_138727697_138756241_138756350_138780796
53950	chr6	-	1515	5	FSM	ENSMUSG00000030057.16	ENSMUST00000032138.15	2178	5	47	616	0	-149	multi-exon	FALSE	non_canonical	0	0	junction_2	4630.48644177909	1	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAGAAAATAGAAAATGTAA	NA	False	NA	NA	False	NA	NA	NA	87828041	87820212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822306_87822446_87822540_87822637_87822776_87827885
53951	chr1	-	2248	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	35	5	35	-5	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	174	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGATAAGTTGGAGTTATA	NA	False	NA	NA	False	NA	NA	NA	135211787	135190454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
53952	chr14	-	2272	5	NNC	ENSMUSG00000002320.16	novel	2382	5	NA	NA	-4	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	176.818409675011	2	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATTTATTAAGAAAAA	5227	False	NA	NA	False	NA	NA	NA	55880776	55873444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55874070_55875315_55875645_55877837_55878028_55878643_55879046_55880050
53953	chr10	+	1652	1	FSM	ENSMUSG00000074862.12	ENSMUST00000099442.4	2785	1	1126	7	1126	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAACAAACAAAAACAGT	NA	False	NA	NA	False	NA	NA	NA	81443984	81445636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81444000_81445600
53954	chr9	-	1988	14	NIC	ENSMUSG00000043987.19	novel	6105	32	NA	NA	-14	-2684	combination_of_known_junctions	FALSE	canonical	3	20	junction_3	7.44685311401905	16	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAGCTGGAAGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	45739951	45693435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_45693547_45696180_45696328_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
53955	chr9	-	897	6	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-4	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1088.22780703307	206	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGCAGCATGGTGG	NA	False	NA	NA	False	NA	NA	NA	21671603	21666729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21667014_21667361_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671547
53956	chr5	+	3627	14	ISM	ENSMUSG00000041638.19	ENSMUST00000064454.12	8555	58	46392	6	-185	0	3prime_fragment	FALSE	canonical	2	428	junction_7	68.1203251476742	5	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGAAGCAGGAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	115749704	115760707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115750812_115751414_115751577_115751782_115751876_115752134_115752279_115752389_115752660_115752919_115753034_115753427_115753659_115754409_115754604_115754692_115754808_115757355_115757453_115757710_115757860_115758202_115758311_115759559_115759779_115760083
53957	chr17	-	1372	5	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	2	9	intron_retention	FALSE	canonical	0	0	junction_4	96.1414972839512	389	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATTGCTGTCAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	79202527	79192316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79200136_79200372_79201971
53958	chr17	-	1490	10	NIC	ENSMUSG00000058704.10	novel	3163	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	80.0302411977675	301	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	NA	NA	NA	74602494	74507696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686_74601765_74602407
53960	chr18	-	1560	8	NNC	ENSMUSG00000024644.18	novel	1956	10	NA	NA	-179	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	216.026453406588	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAACTGCCGTGGTCTGA	NA	False	NA	NA	False	NA	NA	NA	84699144	84685595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693267_84699080
53961	chr11	-	964	8	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	474.64444265026	9	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190852	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119184708_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
53962	chr16	-	2374	6	NNC	ENSMUSG00000071533.12	novel	2295	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	1010.67751533316	1	127	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTCTTATTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55850039	55835869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55837681_55838834_55838891_55840073_55840217_55842417_55842493_55844586_55844802_55849965
53963	chr6	-	1036	7	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2223.66045194754	88	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438273_125439076_125439101_125440643_125440723_125441352_125441451_125449371_125449475_125471536
53965	chr2	+	1800	10	FSM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	122	6	-14	-6	multi-exon	FALSE	canonical	3	86	junction_4	15.4040238449986	461	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAACTGTGTGTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	125708148	125825501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
53968	chr19	-	1179	5	ISM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	5	0	5	0	intron_retention	FALSE	canonical	3	216	junction_3	14.3614066163451	54	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4892	False	NA	NA	False	NA	NA	NA	45738025	45736172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495
53969	chr7	+	2528	9	NNC	ENSMUSG00000023467.19	novel	259	2	NA	NA	0	74	intron_retention	FALSE	canonical	3	11	junction_1	26.4028289204017	5	21	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACCCTTCCTTGTCCCTT	1284	False	NA	NA	False	NA	NA	NA	45165231	45172092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45165379_45165662_45165801_45165939_45166111_45167203_45168331_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
53970	chr9	+	1750	14	NNC	ENSMUSG00000032078.18	novel	2984	14	NA	NA	-13	102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	198.854262593185	1	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGCCTTTAAACGACACC	NA	False	NA	NA	False	NA	NA	NA	46184477	46192884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187091_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
53972	chr2	-	3722	1	Intergenic	novelGene_2792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	84	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAGGTAACATCTT	NA	False	NA	NA	False	NA	NA	NA	168791201	168787479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_168787500_168791200
53973	chr7	+	3609	11	NIC	ENSMUSG00000030748.10	novel	5256	11	NA	NA	-8	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	3.9	21	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGGTTTCCTTTACT	NA	False	NA	NA	False	NA	NA	NA	125151434	125177133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_125151501_125163723_125163909_125164808_125164897_125166327_125166470_125168194_125168347_125169113_125169266_125170605_125170763_125172022_125172123_125173809_125173889_125174311_125174362_125174695
53975	chr8	-	1359	7	Fusion	ENSMUSG00000053226.8_ENSMUSG00000003813.16	novel	657	3	NA	NA	0	-600	multi-exon	FALSE	canonical	1	2	junction_1	617.918391771024	1	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATAGTGTATGATTAGCC	NA	False	NA	NA	False	NA	NA	NA	85567270	85542633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_85543163_85564088_85564220_85564317_85564397_85564635_85564764_85565097_85565280_85565422_85565585_85567122
53976	chr4	+	1778	4	NNC	ENSMUSG00000028480.15	novel	2320	5	NA	NA	10879	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	117.646362743039	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTTCCTCTAATGCGAT	2206	False	NA	NA	False	NA	NA	NA	43968570	43979117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_43968676_43970499_43970578_43977462_43978290_43978349
53977	chr17	+	1396	10	FSM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	12	341	0	-15	multi-exon	FALSE	canonical	3	388	junction_6	40.441391826191	949	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAGTAACATAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	79244576	79254587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
53979	chr14	-	839	4	NNC	ENSMUSG00000021953.15	novel	902	7	NA	NA	1323	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1572.09082293472	3	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	63733265	63729906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731889_63733168
53980	chr7	+	849	7	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8051.31440097413	10	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12657009_12658217_12658334_12659318_12659529_12659663_12659793_12660322_12660422_12660498
53981	chr16	+	1460	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	14	-1131	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	251.744855403685	1	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGCTGTGCGCACTTA	NA	False	NA	NA	False	NA	NA	NA	48104111	48113469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48108984_48109070_48109401_48109569_48109690_48110191_48111376_48111678_48113273
53982	chr19	-	1488	10	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	-14	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	591.335212323208	1	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCTGGAACTTTGCTT	6510	False	NA	NA	False	NA	NA	NA	4062722	4057499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058501_4058603_4058740_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
53983	chrX	+	2571	7	NIC	ENSMUSG00000009995.18	novel	1742	9	NA	NA	-11	-11	intron_retention	FALSE	canonical	3	118	junction_5	50.559096335103	1	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGCCACCATACCTCTG	NA	False	NA	NA	False	NA	NA	NA	73326344	73333743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73326723_73326877_73327007_73327253_73327624_73331624_73331706_73331783_73331826_73332056_73332789_73332904
53985	chr14	+	2014	10	FSM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	244	1436	244	-1436	multi-exon	FALSE	canonical	3	658	junction_1	26.1788718880958	199	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTATTTTATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	55983393	55991521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55983478_55983617_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
53986	chr5	-	2383	10	NNC	ENSMUSG00000037373.13	novel	2436	10	NA	NA	-346	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	266.96224359668	165	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGCACGCCTGGCACCAG	NA	False	NA	NA	False	NA	NA	NA	33432684	33405073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33432550
53987	chr7	+	1837	4	NNC	ENSMUSG00000035632.17	novel	541	2	NA	NA	723	4361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	272	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGGCCCACTCTTCAGCA	5374	False	NA	NA	False	NA	NA	NA	3663111	3668469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3664359_3665768_3666023_3666679_3666860_3668313
53988	chr1	+	3491	12	NNC	ENSMUSG00000026554.16	novel	4656	13	NA	NA	-8094	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	166.344012752225	1	184	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTGCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	171993426	172023950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016634_172020084_172020205_172021351_172021469_172022122
53991	chr9	+	723	6	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7569.74183443531	649	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64080655	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083466_64085639
53992	chr5	-	1789	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	7	20	7	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	1	87	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGCATACAGGAAAGGTT	NA	False	NA	NA	False	NA	NA	NA	134975781	134973992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134974000_134975800
53994	chr8	+	5537	9	FSM	ENSMUSG00000031618.14	ENSMUST00000109912.8	5675	9	91	47	32	-47	multi-exon	FALSE	canonical	0	0	junction_1	2.17944947177034	7	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTTGCAAAGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	77629006	77971589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_77629169_77634898_77636658_77812155_77812296_77881830_77881948_77912404_77912744_77914148_77914294_77937272_77937404_77944056_77944215_77969003
53995	chr6	+	3455	13	ISM	ENSMUSG00000031668.15	ENSMUST00000034093.15	4513	17	37056	5	3010	-5	3prime_fragment	FALSE	canonical	3	52	junction_4	10.3144989645105	53	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAATAGTTGACTCTTATT	9091	False	NA	NA	False	NA	NA	NA	70858554	70882224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_70858703_70859248_70859412_70860578_70860720_70861753_70861877_70862144_70862366_70864783_70864897_70866458_70866582_70867048_70867199_70869338_70870126_70873899_70874068_70877215_70877318_70878388_70878452_70881071
53996	chr4	-	1003	5	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	967.380838915057	2	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAACTTCTTTTTGTGTG	2	True	NA	NA	False	NA	NA	NA	41098180	41092727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093002_41093195_41093578_41094797_41094839_41095144_41095272_41098001
53997	chr8	-	652	5	NNC	ENSMUSG00000002885.15	novel	2980	18	NA	NA	1540	993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCGTCGTCCACAAACACC	NA	False	NA	83	True	NA	NA	NA	84449898	84448886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84448988_84449074_84449187_84449276_84449434_84449527_84449663_84449751
54001	chr9	+	1996	6	ISM	ENSMUSG00000025236.12	ENSMUST00000026266.9	2464	7	6121	6	6110	-6	3prime_fragment	FALSE	canonical	3	314	junction_5	122.610929366023	267	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCCAGGATCCTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	59204975	59223473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59205035_59210771_59210835_59217510_59217632_59220322_59220520_59221035_59221135_59222016
54002	chr7	-	3963	4	NNC	ENSMUSG00000070709.13	novel	603	4	NA	NA	40	-1309	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	22.7596133534821	5	137	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTAAACTGCATTTGA	NA	False	NA	NA	False	NA	NA	NA	27626843	27608125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27611687_27620121_27620214_27625543_27625836_27626825
54003	chr9	+	778	6	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1907.89521724858	209	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959338_119960095_119960232_119960465
54005	chr8	+	2084	2	ISM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	-7	-2	-7	2	intron_retention	FALSE	canonical	3	606	junction_1	0	47	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACCAAACACCCCATT	454	False	NA	NA	False	NA	NA	NA	70583989	70586391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70584250_70584567
54006	chr4	+	3262	10	FSM	ENSMUSG00000028698.14	ENSMUST00000030464.14	5257	10	689	1306	654	-1306	multi-exon	FALSE	canonical	2	5	junction_9	3.32591767713239	13	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACGCCTTTTTAAAGAAA	3980	False	NA	NA	False	NA	NA	NA	116079546	116158947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116079611_116113364_116113474_116116741_116116841_116127984_116128166_116129935_116130062_116143252_116143396_116144019_116144197_116148871_116148947_116149293_116149465_116156830
54007	chr9	-	1187	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	961.498049920019	12	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAAAGTGTGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	21671593	21666738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21667439_21668431_21668490_21668585_21668691_21668980_21669126_21671414
54010	chr1	-	1300	4	FSM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	33	33	-3	-33	multi-exon	FALSE	canonical	3	72	junction_3	7.36357401145817	555	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCTGTCAAAATCCAGGGG	NA	False	NA	NA	False	NA	NA	NA	93233604	93228959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93229518_93230439_93230625_93232329_93232829_93233546
54013	chr9	+	2317	12	Antisense	novelGene_ENSMUSG00000032127.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCTGGTAAAGGTAGACAC	4414	False	NA	NA	False	NA	NA	NA	44259459	44269469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44259877_44260193_44260425_44263898_44264067_44264204_44264409_44264513_44264649_44265128_44265295_44265398_44265591_44265707_44265851_44266257_44266448_44266994_44267148_44267524_44267733_44269359
54014	chr2	+	1027	6	NIC	ENSMUSG00000062647.17	novel	920	7	NA	NA	-1	-27	intron_retention	FALSE	canonical	3	4686	junction_5	290.003172396441	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAATATAATTACAAAATT	NA	False	NA	NA	False	NA	NA	NA	26801016	26803303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26801139_26801433_26801584_26802030_26802458_26802682_26802814_26802999_26803070_26803176
54015	chr4	-	4991	8	NNC	ENSMUSG00000049878.14	novel	6242	8	NA	NA	125	-1130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	68.5565460040104	2	284	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAGAAAGCCCCATAC	6589	False	NA	NA	False	NA	NA	NA	121072156	121004209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_121008220_121012052_121012195_121016384_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
54016	chr2	+	1019	2	Genic_Genomic	ENSMUSG00000081416.2	novel	386	1	NA	NA	-3829	279	multi-exon	FALSE	canonical	0	0	junction_1	0	6	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCTGTTAAAATTTTCT	NA	False	NA	NA	False	NA	NA	NA	119495810	119500304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_119496358_119499832
54018	chr11	+	1927	8	NNC	ENSMUSG00000034773.17	novel	2547	10	NA	NA	-386	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	113.959534529604	5	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGCCAGCCTCCGTCC	556	False	NA	NA	False	NA	NA	NA	102146091	102156003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102146848_102148712_102148797_102150145_102150287_102150659_102150760_102150931_102150991_102151316_102151443_102153008_102153127_102155460
54019	chr5	+	2932	3	NNC	ENSMUSG00000067365.12	novel	1291	5	NA	NA	4	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	100	4	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAATTTTCTTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	38417718	38426960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_38419183_38423718_38424629_38426402
54021	chr19	+	1385	1	ISM	ENSMUSG00000038658.16	ENSMUST00000043610.13	7190	26	83085	78	7522	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	30	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGTAAACTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	29582766	29584151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_29582800_29584200
54022	chr2	+	1521	11	NNC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	-56	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	529.122679536608	3	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCAATAGTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	69693578	69701851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701139_69701465
54024	chr1	+	1747	4	ISM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	89	4887	89	-4887	5prime_fragment	FALSE	canonical	2	28	junction_1	11.4406682011537	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTTATAAAACGACAAGAC	NA	False	NA	NA	False	NA	NA	NA	164103242	164110529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959
54025	chr4	-	2045	8	ISM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	35	5493	-12	-292	5prime_fragment	FALSE	canonical	1	98	junction_2	82.2164887380151	29	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTATTTTATTTATGAGT	NA	False	NA	NA	False	NA	NA	NA	149251129	149239940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
54026	chr5	+	1011	6	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	214	-212	at_least_one_novel_splicesite	FALSE	canonical	1	97	junction_3	8896.56051291734	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697895	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115699064_115699157_115699305_115699403_115699578_115700484_115700626_115701341
54027	chr1	+	1473	9	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	0	-46	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	431.251594199952	1	50	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTATTTACGGTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	15875869	15913648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889992_15901743_15901791_15903624_15903663_15913144
54028	chr9	-	2004	19	NNC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	4	140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.176215529158	1	93	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGACCACAATCTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	64080157	64045134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64045342_64047172_64047299_64051361_64051462_64054100_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060243_64060832_64060929_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
54029	chr15	-	1814	8	NIC	ENSMUSG00000035845.18	novel	1793	8	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	14.7592931637622	38	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTGTCTTGTTGTTGGT	9231	False	NA	NA	False	NA	NA	NA	88703534	88689447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_88690258_88690601_88690678_88690760_88690925_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
54031	chr8	-	2046	3	FSM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	50	2256	16	1307	multi-exon	FALSE	canonical	3	21	junction_1	4	80	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATGGTGTGTGGTCGTT	NA	False	NA	NA	False	NA	NA	NA	106485246	106442741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106444283_106454619_106454964_106485085
54032	chr15	-	2023	2	FSM	ENSMUSG00000045281.6	ENSMUST00000064166.5	2144	2	113	8	113	-8	multi-exon	FALSE	canonical	2	16	junction_1	0	24	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCAAACTCAGGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	73579241	73566460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_73568412_73579169
54033	chr12	-	1036	1	Intergenic	novelGene_4311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGAAAGAGAGTAAGAGGG	NA	False	NA	NA	False	NA	NA	NA	20858355	20857319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_20857300_20858400
54034	chr17	-	1611	4	NIC	ENSMUSG00000092203.8	novel	579	5	NA	NA	0	-5	intron_retention	FALSE	canonical	3	94	junction_3	41.206795556073	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTACTTAAATAGACTT	6010	False	NA	NA	False	NA	NA	NA	35171444	35169223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35169452_35169673_35170902_35171111_35171150_35171327
54035	chr9	-	3459	3	NIC	ENSMUSG00000042360.13	novel	1128	4	NA	NA	52	894	intron_retention	FALSE	canonical	3	3	junction_2	7.5	18	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCATTTCTCATACTA	NA	False	NA	NA	False	NA	NA	NA	3199730	3189376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_3192413_3192819_3193049_3199536
54036	chr7	-	1522	2	FSM	ENSMUSG00000041775.8	ENSMUST00000075667.5	1502	2	-10	-10	3	0	multi-exon	FALSE	canonical	3	55	junction_1	0	159	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAACTTGTTTTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	138447999	138437551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_138438760_138447685
54037	chr19	-	1220	10	NNC	ENSMUSG00000024910.6	novel	1496	9	NA	NA	1273	4428	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	936	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGTTCGGAGATTTTGCT	NA	False	NA	NA	False	NA	NA	NA	5515080	5510642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5510802_5510981_5511185_5511414_5511543_5512557_5512658_5513195_5513337_5513628_5513739_5513812_5513877_5514154_5514242_5514359_5514459_5514951
54038	chr5	+	1020	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	33	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2603.42207292554	6	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGCTTTTTCTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	108048400	108055911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051767_108052646_108052761_108055054_108055144_108055762
54039	chr11	+	1717	9	NIC	ENSMUSG00000020389.20	novel	2051	13	NA	NA	29	10	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	2.64575131106459	9	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAGACTATCCTAGAACT	NA	False	NA	NA	False	NA	NA	NA	51895145	51918401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51895245_51895739_51895920_51901957_51902153_51909103_51909283_51910556_51910670_51913564_51913705_51916665_51916755_51917585_51917746_51917839
54040	chr6	+	1535	1	Antisense	novelGene_ENSMUSG00000096403.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	68	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTAGGAGAAGGAGCCATC	NA	False	NA	NA	False	NA	NA	NA	7981832	7983367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_7981800_7983400
54041	chr16	+	1841	7	NIC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	-186	-18	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	68.1729825924871	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCTCTCCAGGCAGTACA	NA	False	NA	NA	False	NA	NA	NA	8455351	8475377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_8455693_8460601_8460714_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
54042	chr11	+	2474	8	ISM	ENSMUSG00000020513.16	ENSMUST00000167178.9	1976	9	242	428	242	-428	5prime_fragment	FALSE	canonical	1	1	junction_1	15.9540155523585	1	53	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGTGGCTATGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	86436058	86457757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_86436163_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510
54043	chr16	+	1904	14	FSM	ENSMUSG00000022945.13	ENSMUST00000117099.8	1894	14	5	-15	-2	15	multi-exon	FALSE	canonical	3	16	junction_1	247.655157271309	58	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATTGGTTCACATAGAA	4394	False	NA	NA	False	NA	NA	NA	93680816	93702980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_93680864_93681320_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
54044	chr7	+	1604	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-13114	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	114.944551850012	60	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCATAAAAGACTGGTTA	NA	False	NA	NA	False	NA	NA	NA	81906979	81956616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81907172_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
54045	chr11	+	2158	4	Fusion	ENSMUSG00000065546.3_ENSMUSG00000078706.5	novel	1172	3	NA	NA	78	186	multi-exon	FALSE	canonical	2	8	junction_3	8.73053390247253	38	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAGAGGGAGAGGGAGAG	8353	False	NA	NA	False	NA	NA	NA	96142008	96156277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_96142640_96152437_96152836_96154999_96155212_96155360
54046	chr5	-	1210	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	149	425	-47	419	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	1930	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	25047473	25008245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
54047	chr5	+	2006	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25801	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.7487796249151	126	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAATGAATTAATTTATT	NA	False	NA	NA	False	NA	NA	NA	121026797	121059710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121026862_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
54048	chr6	+	1287	10	NNC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	77.5253045108897	368	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9477	False	NA	NA	False	NA	NA	NA	83772182	83779538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83772265_83773888_83774075_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
54049	chr8	+	2603	18	NIC	ENSMUSG00000014791.11	novel	3189	20	NA	NA	-6	-1	intron_retention	FALSE	canonical	2	11	junction_1	6.70588235294118	2	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATGTGTTAAATCAGCT	NA	False	NA	NA	False	NA	NA	NA	106032226	106036608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106032462_106032598_106032640_106032746_106032820_106033009_106033061_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
54050	chr19	-	837	2	ISM	ENSMUSG00000042401.9	ENSMUST00000238290.2	2164	15	144502	15254	671	-9	internal_fragment	FALSE	canonical	3	78	junction_1	0	1	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTAACAACCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	42275722	42271979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_42272706_42275611
54052	chr7	-	1691	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	18	0	18	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	274	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9941	False	NA	NA	False	NA	NA	NA	29789934	29776761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
54053	chr8	-	1880	5	NNC	ENSMUSG00000031586.18	novel	2466	8	NA	NA	-12680	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	584.59446413732	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTGTCTGACAACTT	NA	False	NA	NA	False	NA	NA	NA	34356381	34272670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324438_34356354
54054	chr12	+	1635	4	NNC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-1	-214	intron_retention	FALSE	canonical	0	0	junction_1	212.628523225105	16	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCTGTTCATGATTATT	NA	False	NA	NA	False	NA	NA	NA	21366413	21373606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21367425_21367902_21368048_21369770_21369933_21373289
54055	chr9	-	2111	8	ISM	ENSMUSG00000033419.17	ENSMUST00000074468.13	4336	30	97013	0	15263	0	3prime_fragment	FALSE	canonical	1	1	junction_1	9.63200447487861	19	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAATGCAAACGTAATC	NA	False	NA	NA	False	NA	NA	NA	86665489	86647988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_86649390_86651511_86651615_86655571_86655677_86656249_86656334_86657644_86657745_86659086_86659118_86663622_86663773_86665352
54056	chr10	+	2751	7	FSM	ENSMUSG00000019796.13	ENSMUST00000019931.12	3386	7	635	0	325	0	multi-exon	FALSE	canonical	3	223	junction_6	23.7065391822594	110	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTCTTATAAATTATAG	7900	False	NA	NA	False	NA	NA	NA	7466215	7501247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_7466378_7471867_7472029_7474470_7474613_7478592_7478719_7479937_7480148_7484307_7484404_7499393
54057	chr5	+	2009	12	NNC	ENSMUSG00000029387.11	novel	2672	13	NA	NA	-1	251	intron_retention	FALSE	non_canonical	0	0	junction_5	282.865677903024	3	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTAATTTTCCTTAGAGT	NA	False	NA	NA	False	NA	NA	NA	124717227	124734901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726765_124728399_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980_124734124_124734406
54058	chr4	+	1682	9	NIC	ENSMUSG00000036073.19	novel	1859	10	NA	NA	-243	-13	intron_retention	FALSE	canonical	2	43	junction_2	92.3116325280839	23	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTTTTCTGACACCAGA	-6	True	NA	NA	False	NA	NA	NA	41755514	41758682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083
54059	chr1	-	1717	11	NNC	ENSMUSG00000026355.12	novel	4355	16	NA	NA	-3	-260	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	988.390413753594	1	82	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACTGATGCTGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	128287387	128269019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128269178_128271147_128271256_128272033_128272176_128273604_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
54061	chr4	-	1880	4	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	21635	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	861.581491599411	1	99	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGCCTGAAGGTTAT	NA	False	NA	NA	False	NA	NA	NA	137063375	137047013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048504_137056023_137056222_137056325_137056428_137063285
54063	chr5	-	1674	6	NNC	ENSMUSG00000029545.14	novel	1870	10	NA	NA	6441	0	intron_retention	FALSE	canonical	0	0	junction_5	175.04902170535	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	115250893	115248357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115249996_115250298
54064	chr1	-	1132	6	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	-7	-10	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	942.265482759503	808	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATCTCACGAGCTTTGG	2303	False	NA	NA	False	NA	NA	NA	93729663	93720307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93726630_93728523_93728633_93729419
54065	chr7	-	3350	3	NNC	ENSMUSG00000048065.9	novel	2772	9	NA	NA	14	-4151	intron_retention	FALSE	canonical	3	16	junction_1	7	32	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAATAAATTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	107357225	107353322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_107356519_107356818_107356912_107357164
54066	chr7	-	3853	1	Intergenic	novelGene_3041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCCATAGCTTTGCAT	NA	False	NA	NA	False	NA	NA	NA	130340887	130337034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_130337000_130340900
54067	chr2	+	1960	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	35	1159	35	495	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	17	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATGTAACAGCTGAGTT	NA	False	NA	NA	False	NA	NA	NA	120439898	120450882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
54068	chr15	-	2168	9	NNC	ENSMUSG00000015377.11	novel	1904	16	NA	NA	-4	0	intron_retention	FALSE	canonical	2	7	junction_1	37.6677498000611	1	80	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTCTGGTCCCTGACT	2871	False	NA	NA	False	NA	NA	NA	89073051	89069019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89069470_89069572_89069668_89069740_89070251_89070374_89070465_89070565_89071023_89071158_89071447_89071534_89071658_89072813_89072894_89072976
54069	chrX	+	805	5	ISM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	118	12	-1	-12	intron_retention	FALSE	canonical	3	7516	junction_1	895.89801316891	69	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTCGCTTATGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	73314583	73316729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277
54071	chr11	+	2247	7	NIC	ENSMUSG00000000976.14	novel	5614	20	NA	NA	-660	-54	intron_retention	FALSE	canonical	3	63	junction_5	4.35889894354067	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTCTTTTAGTCTCAGAA	18	False	NA	NA	False	NA	NA	NA	83664589	83672793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
54072	chr11	+	1265	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	15	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5640	3	52	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3050	False	NA	NA	False	NA	NA	NA	75623753	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642785_75655644
54073	chr10	+	1047	1	NIC	ENSMUSG00000020225.11	novel	904	7	NA	NA	71	-2467	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGAGGAGCGGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	120056663	120057710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_120056700_120057700
54077	chr7	+	1343	9	ISM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	60	0	60	0	intron_retention	FALSE	canonical	3	645	junction_5	37.6677498000611	2996	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28524701	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141
54078	chr7	+	2898	6	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-165	13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	12.5283678106927	3	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTGGGTGGTGGACTCC	2989	False	NA	NA	False	NA	NA	NA	6980079	6994099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6980472_6984231_6984357_6987994_6988143_6989101_6989202_6991881_6992745_6992829
54079	chr7	-	1826	13	NIC	ENSMUSG00000030720.17	novel	2386	15	NA	NA	9	-2	intron_retention	FALSE	canonical	3	116	junction_9	20.24982853151	3	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTCCTTTTTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	126182389	126171263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
54080	chr7	+	850	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	201	197	-5	14	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	52	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGATAAGCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	65710286	65724138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
54081	chr1	-	2499	10	NIC	ENSMUSG00000026196.8	novel	5659	11	NA	NA	220	-2859	combination_of_known_splicesites	FALSE	canonical	3	5	junction_6	12.1289369324402	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTGATGCCTAAACTG	NA	False	NA	NA	False	NA	NA	NA	71142085	71069515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71113701_71114640_71127267_71127411_71128629_71128687_71141826
54082	chr8	+	2683	3	FSM	ENSMUSG00000031861.17	ENSMUST00000034325.6	5837	3	179	2975	24	-2974	multi-exon	FALSE	canonical	3	18	junction_1	0	62	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAAACGTCTCTTTCTTT	513	False	NA	NA	False	NA	NA	NA	70275257	70280777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70275362_70276203_70276946_70278940
54084	chr1	+	3323	1	FSM	ENSMUSG00000041075.9	ENSMUST00000114246.4	4532	1	1196	13	1196	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	59	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTAAAAAATACAAAGTG	6550	False	NA	NA	False	NA	NA	NA	59522778	59526101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_59522800_59526100
54086	chr13	-	1825	13	NNC	ENSMUSG00000034617.8	novel	2728	14	NA	NA	0	-896	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	144.990804306112	1	46	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTTGTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	68730223	68710377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68714904_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68728669_68728835_68730183
54087	chr4	-	1618	9	NNC	ENSMUSG00000028494.13	novel	1888	8	NA	NA	-11	-145	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	194.707472892028	2	52	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGCCTCTGCTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	86588234	86574946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86575285_86575346_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
54088	chr5	-	2976	10	FSM	ENSMUSG00000042002.12	ENSMUST00000044790.12	3016	10	40	0	-18	0	multi-exon	FALSE	canonical	2	4	junction_3	3.91893157523298	33	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTGACTCAGTGTGGA	NA	False	NA	NA	False	NA	NA	NA	114411828	114392224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114393812_114394619_114395013_114396568_114396777_114397810_114397908_114398410_114398539_114398926_114399047_114399135_114399264_114401069_114401216_114411033_114411123_114411748
54089	chr10	-	689	2	Fusion	ENSMUSG00000045055.6_ENSMUSG00000112429.2	novel	1736	2	NA	NA	10882	70	multi-exon	FALSE	canonical	0	0	junction_1	0	3	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATATTTATTTTAT	379	False	NA	NA	False	NA	NA	NA	128626380	128612169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_128612838_128626359
54090	chr19	-	1389	9	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	608.116148445344	6	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATAGCTTGTCTGGAACT	6560	False	NA	NA	False	NA	NA	NA	4062672	4057505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4057666_4057769_4057916_4058357_4058510_4058593_4058790_4059358_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
54092	chr2	-	1969	8	ISM	ENSMUSG00000027014.15	ENSMUST00000144727.8	2094	12	15	6680	-1	2936	5prime_fragment	FALSE	canonical	3	143	junction_7	62.4568422421206	22	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGTAATCACTGTTGAA	NA	False	NA	NA	False	NA	NA	NA	77776528	77753450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
54094	chr9	-	1286	3	ISM	ENSMUSG00000037287.16	ENSMUST00000125995.8	4849	8	18382	2786	-10979	573	3prime_fragment	FALSE	canonical	3	46	junction_2	1.5	11	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCGGTTAGGTTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	42350513	42326397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_42327446_42348410_42348528_42350392
54095	chr18	-	2018	12	FSM	ENSMUSG00000024644.18	ENSMUST00000025546.17	2124	12	65	41	-10	-35	multi-exon	FALSE	canonical	3	418	junction_11	64.2627612178223	2	91	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCTACTACTAATAAATGT	NA	False	NA	NA	False	NA	NA	NA	84703762	84685630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962_84700053_84703727
54096	chr9	-	840	6	ISM	ENSMUSG00000011114.19	ENSMUST00000117654.3	1984	9	4253	427	4099	-8	3prime_fragment	FALSE	canonical	3	1638	junction_2	40.2591604482756	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTTCGGTTATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	37564355	37560485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328
54097	chr2	-	3262	9	NNC	ENSMUSG00000027408.8	novel	2366	14	NA	NA	79	-13	intron_retention	FALSE	canonical	0	0	junction_1	54.6345815395341	1	139	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTGCCTGATACTCCTC	NA	False	NA	NA	False	NA	NA	NA	130239415	130232708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130233063_130233155_130233261_130234990_130236354_130236656_130236746_130236841_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
54098	chr11	+	3268	18	Antisense	novelGene_ENSMUSG00000005198.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	165	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGAGGTGCCCAGGGAC	3826	False	NA	NA	False	NA	NA	NA	69625898	69634730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69626384_69626467_69626641_69626743_69626837_69626980_69627147_69627597_69627803_69628005_69628185_69628270_69628379_69630254_69630357_69630707_69630951_69631081_69631307_69631823_69632033_69632470_69632566_69632663_69632843_69633197_69633378_69633507_69633735_69634078_69634279_69634414_69634508_69634624
54101	chr11	+	1831	12	NNC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	-16	-2805	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	293.690144244655	1	93	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATATTCTAAATATCTTT	NA	False	NA	NA	False	NA	NA	NA	102919394	102956933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948192_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
54104	chr7	+	2269	6	Antisense	novelGene_ENSMUSG00000092574.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACGCAAAGCCGAAAGTC	NA	False	NA	NA	False	NA	NA	NA	8088294	8096007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_8089969_8091138_8091227_8091986_8092113_8093258_8093301_8093376_8093460_8095751
54105	chrX	-	1054	7	ISM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	40	5856	0	4519	5prime_fragment	FALSE	canonical	3	893	junction_1	51.4838162273673	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCACAGCATTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	37545291	37514239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
54106	chr18	+	2548	2	NIC	ENSMUSG00000024590.9	novel	2843	11	NA	NA	19639	0	intron_retention	FALSE	canonical	3	1501	junction_1	0	4	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTGTTCTTTTTAACCC	NA	False	NA	NA	False	NA	NA	NA	56881151	56886496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_56882882_56885678
54107	chr2	-	1285	3	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	463	120	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	152185919	152179341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180358_152185121_152185248_152185776
54108	chr2	+	2065	4	Antisense	novelGene_ENSMUSG00000036281.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAGTGGCCTATGTACAT	NA	False	NA	NA	False	NA	NA	NA	26263340	26266645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_26264198_26264503_26264577_26264654_26264758_26265613
54109	chr11	-	2042	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	11	1309	11	-1309	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACATGCAGAGGCACTGAA	NA	False	NA	NA	False	NA	NA	NA	20781045	20774884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
54111	chr4	-	1593	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	30	0	30	0	multi-exon	FALSE	canonical	3	984	junction_1	0	2	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127222924	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127220565_127222868
54112	chr5	+	1018	5	FSM	ENSMUSG00000019054.14	ENSMUST00000111094.8	948	5	-71	1	-71	-1	multi-exon	FALSE	canonical	3	123	junction_1	181.92443486239	1122	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTCTGTGTGTGAGCGA	3980	False	NA	NA	False	NA	NA	NA	136982057	136995085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136982445_136991852_136991986_136993946_136994024_136994418_136994525_136994770
54114	chr9	+	1004	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8391.02702295732	1	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64080657	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082247_64082929_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085292_64085671
54118	chr7	+	1101	6	Antisense	novelGene_ENSMUSG00000074227.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	990	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCGAGCCGCCGGCCGT	NA	False	NA	NA	False	NA	NA	NA	28955765	28981067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_28956269_28957830_28958014_28958823_28958878_28959795_28959858_28963022_28963191_28980936
54119	chr9	+	1470	6	FSM	ENSMUSG00000057982.9	ENSMUST00000072465.9	1425	6	-45	0	3	0	multi-exon	FALSE	canonical	3	9	junction_5	52.9694251431899	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGTTTTG	752	False	NA	NA	False	NA	NA	NA	22137021	22154650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150550_22154329
54121	chrX	-	1533	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	2	978	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	685	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	NA	False	NA	NA	NA	162741655	162735608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
54124	chr3	+	2748	1	Intergenic	novelGene_3149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTCTCCTGATTGGTT	NA	False	NA	NA	False	NA	NA	NA	88733946	88736694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_88733900_88736700
54125	chr12	+	1850	10	NIC	ENSMUSG00000035597.20	novel	3457	15	NA	NA	267	2124	intron_retention	FALSE	canonical	3	88	junction_6	122.755804971989	2	29	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAGGAAAGCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	65090388	65106696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103024_65103294_65104502_65104688_65106644
54126	chr5	+	1373	7	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-7	1358	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	824.87387924862	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCACGAGAGCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	34493753	34509229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506100_34507255_34507416_34508133_34508183_34508574
54127	chr5	+	2079	9	Antisense	novelGene_ENSMUSG00000029422.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	106	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGCCTCGAAGCTTCGC	NA	False	NA	NA	False	NA	NA	NA	123866488	123887416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_123867415_123868513_123868610_123869112_123869333_123871618_123871701_123874624_123874750_123877566_123877753_123878730_123878928_123882990_123883166_123887344
54129	chr12	-	1448	4	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	7	-1393	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_2	7.71722460186015	43	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	NA	False	NA	NA	NA	52053277	52045682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_52046657_52051079_52051154_52051661_52051732_52052947
54130	chr11	+	1625	9	FSM	ENSMUSG00000020424.4	ENSMUST00000020699.4	1574	9	-51	0	-51	0	multi-exon	FALSE	canonical	3	115	junction_3	11.4229757506527	663	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7067	False	NA	NA	False	NA	NA	NA	4168173	4172409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
54131	chr19	-	3114	17	FSM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	24	2	0	-2	multi-exon	FALSE	canonical	3	33	junction_16	8.80961832317383	42	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGATCTGTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	6817980	6806579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641_6808816_6809135_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827_6817047_6817701_6817774_6817860
54132	chr10	-	3271	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	-23	59	7	-59	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	1	100	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATATGTATATTTACT	NA	False	NA	NA	False	NA	NA	NA	127047447	127032994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
54133	chr2	+	1832	2	Genic_Genomic	ENSMUSG00000078201.6	novel	854	1	NA	NA	24	1240	multi-exon	TRUE	non_canonical	0	0	junction_1	0	106	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCAACCACATGGTGGCT	NA	False	NA	NA	False	NA	NA	NA	25145474	25147544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_25146687_25146924
54134	chr10	-	1925	8	NIC	ENSMUSG00000034748.17	novel	1667	9	NA	NA	3	-2	intron_retention	FALSE	canonical	3	14	junction_1	75.7735617023591	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTTGTTACATTTATG	9892	False	NA	NA	False	NA	NA	NA	81463397	81457622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81457913_81458241_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81461733_81462323_81462452_81463305
54135	chr3	+	2327	1	Antisense	novelGene_ENSMUSG00000027809.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACAGGAGTATTAAGTG	NA	False	NA	NA	False	NA	NA	NA	79523876	79526203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_79523900_79526200
54136	chr3	+	908	1	Antisense	novelGene_ENSMUSG00000027809.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCCTGAGTTCAATTCC	NA	False	NA	NA	False	NA	NA	NA	79526847	79527755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_79526800_79527800
54138	chr8	+	1421	7	NNC	ENSMUSG00000003812.14	novel	1715	6	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0864912962436	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGACTTGAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	85635293	85638098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637776_85637964
54139	chr13	+	1384	4	Antisense	novelGene_ENSMUSG00000069208.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGCTTCCGGAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	74628221	74642079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_74629269_74630656_74630718_74630934_74631097_74641965
54140	chr5	-	3205	4	NNC	ENSMUSG00000029634.16	novel	3452	5	NA	NA	65	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.7278126060832	2	156	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGACTGTGTGCAAACTT	2383	False	NA	NA	False	NA	NA	NA	146158163	146146006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_146148824_146154735_146154907_146157211_146157295_146158029
54141	chr3	+	2747	11	NNC	ENSMUSG00000028164.16	novel	3675	17	NA	NA	1587	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	50.9270065878606	1	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACAAAGCTGCATTGAAC	NA	False	NA	NA	False	NA	NA	NA	135230282	135277157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135230389_135248072_135248225_135250486_135250609_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
54142	chr1	+	1714	8	FSM	ENSMUSG00000026150.15	ENSMUST00000160786.8	1645	8	-29	-40	-7	0	multi-exon	FALSE	canonical	3	146	junction_5	134.32947615198	248	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	NA	False	NA	NA	NA	82702631	82730111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82724803_82724864_82728240_82728326_82729305
54143	chr5	+	631	4	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7611.70162023943	4	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121343466	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343678_121345209_121345259_121346453_121346639_121346844
54144	chr8	-	2892	12	NIC	ENSMUSG00000005534.11	novel	9355	21	NA	NA	22	124	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	21.8855022014933	39	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGATGAGAGGTGCAGT	NA	False	NA	NA	False	NA	NA	NA	3329529	3224670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_3224889_3231701_3231738_3234950_3235153_3239124_3239293_3242545_3242803_3244794_3244922_3248060_3248276_3252889_3253035_3254629_3254779_3261378_3261701_3308382_3308935_3329028
54145	chr1	-	3312	9	NNC	ENSMUSG00000062729.13	novel	3043	11	NA	NA	10	-9	intron_retention	FALSE	canonical	1	1	junction_3	38.361561164791	1	186	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGCTTGGTTTGCTCTTT	5199	False	NA	NA	False	NA	NA	NA	171108750	171104573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171104773_171104858_171104902_171105019_171105188_171105266_171105378_171105454_171105574_171105707_171106888_171107003_171108097_171108247_171108343_171108446
54146	chr18	-	1098	8	NNC	ENSMUSG00000024583.4	novel	4343	8	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	333.741009203978	95	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTCTTCGTCATTCT	NA	False	NA	NA	False	NA	NA	NA	63825436	63797176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_63797275_63804684_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
54147	chr17	-	1552	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	-10	-134	-10	3	multi-exon	FALSE	canonical	3	1486	junction_1	49.0167318372002	1212	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAAAAAATTTTGA	6777	False	NA	NA	False	NA	NA	NA	26051903	26049475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019_26051219_26051665
54148	chr11	-	1626	8	NNC	ENSMUSG00000019303.15	novel	1291	8	NA	NA	2281	4512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGGAAACAAGCCAGCGGAC	2168	False	NA	NA	False	NA	NA	NA	100982705	100978136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100978354_100978577_100978614_100979058_100979150_100979421_100979529_100979756_100979859_100980044_100980145_100980493_100980694_100981932
54149	SIRV1	-	619	2	ISM	SIRV1A	SIRV106	973	3	3099	0	2679	0	3prime_fragment	FALSE	canonical	3	905	junction_1	0	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	7687	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV1_-_1485_7552
54150	chr12	+	1094	11	NNC	ENSMUSG00000060073.10	novel	1027	10	NA	NA	1	-3	intron_retention	FALSE	canonical	3	11	junction_2	1551.58199589967	26	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAACATTGTTGGGTAAT	4808	False	NA	NA	False	NA	NA	NA	71021482	71041272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71021542_71025506_71025590_71025674_71025783_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
54152	chr7	+	2691	6	NNC	ENSMUSG00000042178.7	novel	3834	6	NA	NA	1327	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	38.6471214969498	87	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTGTGGGGTCGTCT	NA	False	NA	NA	False	NA	NA	NA	127837855	127844271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127837947_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
54153	chr6	+	1699	12	NNC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.8455214596213	5	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTAGTAGGTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	88879321	88889206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88879513_88882922_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887811_88887860_88888664
54154	chr4	+	1545	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	-21	-5	-1	-2	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	1	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGCAAATGTTTTAT	3175	False	NA	NA	False	NA	NA	NA	129494471	129502319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
54155	chr4	-	1986	6	NNC	ENSMUSG00000078584.10	novel	657	6	NA	NA	2	-3126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.713414041079	37	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGTACTGGAGTTCGAG	NA	False	NA	NA	False	NA	NA	NA	119089903	119080164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119080687_119082719_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
54156	chr9	-	1100	10	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2198.65011336221	8	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATTTCAAGAGATTGTG	NA	False	NA	NA	False	NA	NA	NA	89996696	89973732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974136_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
54158	chr2	+	816	1	NIC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	5456	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTTGATGGAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	157167158	157167974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_157167200_157168000
54159	chr12	+	914	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1259.13105354447	21	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4765	False	NA	NA	False	NA	NA	NA	71021439	71041278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037278_71039802_71039855_71040279_71040345_71041124
54160	chr3	-	1095	10	NNC	ENSMUSG00000059743.13	novel	1237	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	746.447107269241	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	NA	False	NA	NA	NA	89009192	89000894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002919_89006606_89006748_89007975_89008139_89009168
54161	chrX	-	1675	9	NNC	ENSMUSG00000079578.2	novel	782	8	NA	NA	-882	716	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_8	9.82264602843857	250	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATTGAAATTATCAAATTA	NA	False	NA	NA	False	NA	NA	NA	66738050	66725789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059_66737213_66737917
54162	chr1	-	2905	1	Antisense	novelGene_ENSMUSG00000079470.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTCACTCGTACTCAG	NA	False	NA	NA	False	NA	NA	NA	78645181	78642276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_78642300_78645200
54165	chr16	-	1748	2	NIC	ENSMUSG00000022820.5	novel	971	3	NA	NA	-3	-2	intron_retention	FALSE	canonical	3	6758	junction_1	0	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGTTTCTTTTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	37474731	37467964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_37469523_37474541
54166	chr5	+	2302	8	NIC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-12	-4	intron_retention	FALSE	canonical	3	1664	junction_5	123.506919578109	2	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACAAAC	8106	False	NA	NA	False	NA	NA	NA	145051098	145064879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145061505_145062387_145062777_145063536_145063743_145064445_145064537_145064630
54169	chr11	+	3134	1	Antisense	novelGene_ENSMUSG00000040594.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCACGAAAGTGCCTGAA	NA	False	NA	NA	False	NA	NA	NA	33427992	33431126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33428000_33431100
54170	chr16	-	1621	9	FSM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	45	0	35	0	multi-exon	FALSE	canonical	3	1593	junction_8	124.030175259894	618	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	NA	False	NA	NA	NA	17746038	17743086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745849
54171	chrX	-	2175	1	FSM	ENSMUSG00000073294.5	ENSMUST00000117544.2	2201	1	22	4	22	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	59	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTCTCTTTGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	5995451	5993276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_5993300_5995500
54172	chr4	+	1914	4	Antisense	novelGene_ENSMUSG00000028619.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAGCACTAGGAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	106996032	107035375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_106996997_107004711_107004904_107022742_107022887_107034761
54173	chr6	+	2093	9	ISM	ENSMUSG00000040187.16	ENSMUST00000129788.8	1664	15	14915	-865	14	-11	3prime_fragment	FALSE	canonical	0	0	junction_7	1.49478259288767	222	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATTATTTAAATTTCTG	NA	False	NA	NA	False	NA	NA	NA	146721942	146735009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_146722167_146723407_146723649_146724086_146724194_146724591_146724743_146726664_146726727_146728713_146728823_146729596_146729685_146731190_146731300_146734007
54174	chr2	+	1050	5	ISM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	5350	0	-3309	0	3prime_fragment	FALSE	canonical	3	102	junction_2	485.934859317584	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	145750510	145758345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
54175	chr15	+	1363	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	646	1	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139838_80140407_80140723_80140834
54176	chr2	-	940	8	Antisense	novelGene_ENSMUSG00000002102.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	19	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCGAATCTGCCGCTGGG	5562	False	NA	NA	False	NA	NA	NA	90889780	90884458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_90884672_90884911_90884956_90885998_90886022_90887255_90887404_90888104_90888205_90888352_90888498_90889387_90889472_90889597
54177	chr1	+	1498	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	69	-365	53	217	multi-exon	FALSE	canonical	3	82	junction_1	6.13901457890434	253	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTATGACTTACACACAC	NA	False	NA	NA	False	NA	NA	NA	131795030	131800842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
54178	chr3	-	1189	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	115	7	115	-7	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	592	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTTGTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	107876484	107871018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
54179	chr11	-	1303	7	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	-822	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	389.799521121649	7	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAAGTGACTGGAGGTTC	NA	False	NA	NA	False	NA	NA	NA	115973133	115969413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115969613_115969778_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101
54180	chr10	-	1007	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	141	0	-4	0	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	5	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5656	False	NA	NA	False	NA	NA	NA	79875488	79871782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
54182	chr10	+	971	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	430	0	171	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	NA	False	NA	NA	NA	42378456	42411366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
54183	chr17	+	979	7	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-21	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4243.08535541454	145	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6869169	6875299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6873123_6873344_6874010_6874135_6874472_6874551_6874899
54184	chr16	+	1978	16	Intergenic	novelGene_3652	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	102	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCCTAAGCCGAGAGCCC	NA	False	NA	NA	False	NA	NA	NA	38318855	38370495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_38319444_38322934_38323035_38325773_38325853_38329199_38329270_38331084_38331173_38338733_38338895_38347945_38347995_38349805_38349975_38352145_38352178_38355102_38355184_38358267_38358332_38363207_38363310_38366109_38366249_38368801_38368946_38369738_38369805_38370449
54185	chr2	-	1445	4	NIC	ENSMUSG00000026849.19	novel	1401	5	NA	NA	-1	-3	intron_retention	FALSE	canonical	0	0	junction_2	231.548890925629	521	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCGGTGGCTTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	30857901	30850641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30851210_30853486_30853882_30857101_30857368_30857685
54186	chr8	+	2599	17	NNC	ENSMUSG00000031889.10	novel	2916	16	NA	NA	-19	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88.4844619128127	1	116	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATAATGACTTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	105951818	105979361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_105952024_105952064_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105975960_105976095_105976228_105976288_105977350_105977424_105978229
54187	chr5	-	3384	1	Antisense	novelGene_ENSMUSG00000029178.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAATGCCAGGGGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	64974184	64970800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_64970800_64974200
54189	chr17	-	790	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	-78	-2	-52	0	multi-exon	FALSE	canonical	3	583	junction_4	61.4532342517463	3347	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGATGTTATGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	37269503	37265247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
54190	chr11	+	1294	4	Antisense	novelGene_ENSMUSG00000091228.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGCGATGAGCGACAG	NA	False	NA	NA	False	NA	NA	NA	93840732	93846672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_93840872_93842724_93843727_93846319_93846453_93846652
54191	chr6	+	1749	9	NIC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	21	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	240.63146095222	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	NA	False	NA	NA	NA	82923903	83007163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
54192	chr2	-	1371	13	NNC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	0	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	228.117050850849	8	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGAAAAAAATAGTCAATAA	NA	False	NA	NA	False	NA	NA	NA	130126354	130121267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130121358_130121450_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
54193	chr2	-	1669	11	NNC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	89.6026785313921	694	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	NA	False	NA	NA	NA	84307104	84263198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286_84304457_84305105_84305270_84307034
54194	chr17	-	1645	7	FSM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	35	-89	35	89	multi-exon	FALSE	canonical	3	11	junction_5	2.21108319357027	59	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAACGAACCACTATGAAA	1029	False	NA	NA	False	NA	NA	NA	32408488	32403544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32408008
54195	chr3	-	3600	1	Antisense	novelGene_ENSMUSG00000025764.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	362	63	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	7679	False	NA	NA	False	NA	NA	NA	41514912	41511312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_41511300_41514900
54196	chr8	+	1590	12	NIC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	0	-25	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	58.4742650182239	667	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTAAAAAACATGCACATC	8860	False	NA	NA	False	NA	NA	NA	46428564	46449970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_46428626_46432245_46432333_46433351_46433505_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
54197	chr5	+	3228	1	NIC	ENSMUSG00000058013.12	novel	5028	10	NA	NA	8387	-1129	mono-exon	FALSE	NA	NA	NA	NA	NA	7	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCCTAACCTTAGCCCT	NA	False	NA	NA	False	NA	NA	NA	93304748	93307976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_93304700_93308000
54199	chr16	-	1417	2	FSM	ENSMUSG00000022960.14	ENSMUST00000231425.2	308	2	-282	-827	-282	139	multi-exon	FALSE	canonical	3	209	junction_1	0	2	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCACTGTAATACACATGA	6367	False	NA	NA	False	NA	NA	NA	91478560	91476013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91476915_91478044
54200	chr4	-	1199	9	NNC	ENSMUSG00000028851.7	novel	1316	8	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1261.71599419204	1573	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGTGTCCCTCGTCTAG	4454	False	NA	NA	False	NA	NA	NA	133273313	133259854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263033_133263153_133263183_133268449_133268528_133273115
54203	chr7	+	2640	17	NNC	ENSMUSG00000032812.19	novel	5147	34	NA	NA	39	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	35.2366996184376	4	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGCTGAGGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	100997312	101061100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100997407_101016227_101016306_101022162_101022528_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
54204	chr7	+	622	5	ISM	ENSMUSG00000052512.18	ENSMUST00000184955.8	1920	7	57846	17512	-2623	8871	internal_fragment	FALSE	canonical	1	2	junction_2	2.48746859276655	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGACAAGTCCAAACCTGTC	NA	False	NA	NA	False	NA	NA	NA	49011845	49070025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_49011964_49022064_49022118_49047830_49047904_49058380_49058655_49069921
54205	chr7	+	1279	5	ISM	ENSMUSG00000052512.18	ENSMUST00000184945.8	10665	39	218063	61550	14147	-8190	internal_fragment	FALSE	canonical	2	5	junction_2	1.92028643696715	1	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGCACGGGGCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	49114654	49198288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_49114678_49141116_49141240_49185641_49185781_49195547_49195840_49197586
54206	chr7	+	1629	12	ISM	ENSMUSG00000015149.15	ENSMUST00000170068.9	1585	13	9945	1	-97	0	3prime_fragment	FALSE	canonical	3	90	junction_1	8.12708968677346	21	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	8285	False	NA	NA	False	NA	NA	NA	28476185	28488085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
54207	chr11	-	1513	7	NNC	ENSMUSG00000019173.12	novel	1915	6	NA	NA	14	-260	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.5099379318426	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACGCTTGTCTTCCTCG	NA	False	NA	NA	False	NA	NA	NA	100629027	100606096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100606613_100606738_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
54208	chr7	+	1348	5	NIC	ENSMUSG00000035585.17	novel	1319	4	NA	NA	142	-4	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	468.595241119668	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTCCTTACAACAATCC	2381	False	NA	NA	False	NA	NA	NA	3696969	3704019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3697058_3697596_3697844_3697976_3698227_3698350_3698621_3703526
54209	chr4	+	1679	1	Intergenic	novelGene_1797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCTGCCTCTAAATGCT	1045	False	NA	NA	False	NA	NA	NA	11160363	11162042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_11160400_11162000
54210	chrX	-	1982	11	FSM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	-45	-1	-45	1	multi-exon	FALSE	canonical	3	41	junction_1	12.0747670784989	119	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCGTCCCACCGCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	101549010	101328243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
54211	chr2	-	2373	3	ISM	ENSMUSG00000026890.20	ENSMUST00000136821.9	825	5	2853	-1705	2853	-25	3prime_fragment	FALSE	canonical	3	7	junction_1	4	20	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGAAGTGCCGGCACTTA	NA	False	NA	NA	False	NA	NA	NA	35981432	35971990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_35974088_35980973_35981149_35981331
54212	chr15	+	2301	1	Genic_Genomic	ENSMUSG00000064210.8	novel	NA	NA	NA	NA	34403	546	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTACAATGGTTGAGAAG	6773	False	NA	NA	False	NA	NA	NA	95870877	95873178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_95870900_95873200
54213	chr1	+	1228	8	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-9	479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	194.488129851313	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTGTTTGTTTTGTGA	5651	False	NA	NA	False	NA	NA	NA	34478969	34484074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483154_34483552
54214	chr8	+	1078	6	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-10	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	414.988867320558	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTGTATGAGTATTTT	NA	False	NA	NA	False	NA	NA	NA	86026541	86034703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86026622_86027737_86027868_86029424_86029589_86031837_86031951_86032845_86032948_86034214
54215	chr5	+	2787	5	FSM	ENSMUSG00000107385.4	ENSMUST00000201973.4	2764	5	-20	-3	-20	3	multi-exon	TRUE	canonical	3	7	junction_2	4.76969600708473	18	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTTTCTTATTATTTA	8006	False	NA	NA	False	NA	NA	NA	67621219	67628177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991
54216	chr3	+	1597	9	NIC	ENSMUSG00000034544.18	novel	3224	10	NA	NA	1	397	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	116.430169522336	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATCGATTTGTATCACGC	NA	False	NA	NA	False	NA	NA	NA	66893018	67264289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_66893140_66901849_66902046_66903797_66903924_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
54217	chr10	+	1330	5	FSM	ENSMUSG00000020186.8	ENSMUST00000220409.2	780	5	-11	-539	-11	-36	multi-exon	FALSE	canonical	3	157	junction_1	21.9374109684803	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATTTTGGCTTGATTT	NA	False	NA	NA	False	NA	NA	NA	110756039	110775339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_110756116_110767815_110767929_110771008_110771178_110773597_110773728_110774497
54218	chrX	+	1279	1	Intergenic	novelGene_4101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCTCTACCTATCTACC	NA	False	NA	NA	False	NA	NA	NA	161546307	161547586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_161546300_161547600
54220	chr5	-	1494	2	Antisense	novelGene_ENSMUSG00000004846.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATTCACCTGCCTCTGT	7035	False	NA	NA	False	NA	NA	NA	137025391	137022850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_137023911_137024957
54221	chr13	-	2706	3	NNC	ENSMUSG00000032999.11	novel	3527	10	NA	NA	-6135	4993	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	26.5	5	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGTCATTGTGTTTTC	4412	False	NA	NA	False	NA	NA	NA	65344214	65338040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65338201_65338632_65338736_65341771
54222	chr2	+	1442	6	NNC	ENSMUSG00000027203.16	novel	1950	6	NA	NA	-173	-159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	943.649595983594	12	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGGCTATCTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	125089646	125100369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099047_125099366
54223	chr16	+	2891	6	Antisense	novelGene_ENSMUSG00000116919.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCGCGCTACGGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	55663559	55715743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_55665090_55669974_55670182_55680668_55680743_55686158_55686914_55710944_55711177_55715650
54224	chr11	+	2049	4	NNC	ENSMUSG00000034768.5	novel	2843	5	NA	NA	7728	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	22.0504472113883	74	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGAACAAACGTGTGGAC	3443	False	NA	NA	False	NA	NA	NA	102167296	102170277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102167698_102168003_102168118_102168701_102168940_102168981
54229	chr3	+	1233	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	227.48013100049	1357	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAAGTGCATGTTACTGC	NA	False	NA	NA	False	NA	NA	NA	145281977	145309867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_145282174_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
54230	chr11	+	617	1	Intergenic	novelGene_2281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGTAAGCAGAGCTA	NA	False	NA	NA	False	NA	NA	NA	55369147	55369764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_55369100_55369800
54231	chr10	+	1981	4	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-621	599	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	59.0987873536054	17	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGAAGTGTTTTGACTAT	NA	False	NA	NA	False	NA	NA	NA	95728683	95733718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95729296_95729415_95729541_95730052_95730152_95732573
54232	chr13	+	1677	3	Intergenic	novelGene_1562	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_1	12	6	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGATCTTTTGTAACTTAG	1827	False	NA	NA	False	NA	NA	NA	113872506	113876375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113872828_113872948_113873083_113875153
54235	chr3	+	2995	9	FSM	ENSMUSG00000027834.16	ENSMUST00000029423.9	4091	9	0	1096	0	-1096	multi-exon	FALSE	canonical	3	8	junction_2	2.1650635094611	38	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTAATTCTTGGAACT	NA	False	NA	NA	False	NA	NA	NA	75464853	75549706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_75464950_75520386_75520655_75521760_75521992_75523874_75524070_75526425_75526631_75531165_75531264_75545224_75545312_75547555_75547646_75547981
54236	chr2	+	1176	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	8	8	7	-8	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	10	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTATTCTCAGATGCCCCA	NA	False	NA	NA	False	NA	NA	NA	30697960	30713021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
54237	chr5	+	1077	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-14	-220	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7997.5735834203	2	64	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAAACTCCGGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	115697581	115701566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699059_115699157_115699305_115699391_115699578_115700484_115700626_115701341
54238	chr10	-	774	8	NNC	ENSMUSG00000062981.6	novel	677	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	39	junction_3	1853.70330937388	172	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	NA	False	NA	NA	NA	95337789	95316666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95316840_95326107_95326275_95326396_95326444_95326648_95326725_95329492_95329578_95332685_95332750_95336244_95336385_95337767
54240	chr4	+	855	7	NNC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	0	243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	8703.04102822047	5	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGATTCATTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	116542795	116556712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367_116556418_116556494
54242	chr1	+	443	4	NNC	ENSMUSG00000025967.17	novel	642	5	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1437.34972161344	9	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216355	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217036_63217597_63217730_63218722
54243	chrX	-	1824	5	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	109	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTCATCATCTAACTGG	NA	False	NA	NA	False	NA	NA	NA	100492178	100486588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100487110_100488245_100488414_100488897_100488939_100489719_100489834_100491198
54244	chr13	+	1819	7	FSM	ENSMUSG00000021403.4	ENSMUST00000006392.3	3253	7	124	1310	-11	-1310	multi-exon	FALSE	canonical	3	32	junction_4	6.66874967458085	139	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGTATCAGTGACATGCC	NA	False	NA	NA	False	NA	NA	NA	33211522	33224557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_33211584_33213434_33213613_33216898_33217037_33217509_33217628_33219498_33219642_33221954_33222111_33223532
54245	chr5	-	1271	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201534.2	1287	8	8	8	8	-8	multi-exon	FALSE	canonical	3	922	junction_1	63.5022095067951	986	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAGAACTGAAGTCATTA	NA	False	NA	NA	False	NA	NA	NA	135378889	135366227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
54246	chr7	-	1640	13	Antisense	novelGene_ENSMUSG00000030435.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	11	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTCGAGGGCTGAGGGG	NA	False	NA	NA	False	NA	NA	NA	5082932	5069121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_5069175_5069391_5069541_5070208_5070254_5070542_5070644_5071027_5071178_5072436_5072558_5073358_5073497_5077573_5077658_5077731_5077855_5078137_5078226_5078464_5078714_5082178_5082256_5082670
54249	chr9	-	4124	31	ISM	ENSMUSG00000059495.15	ENSMUST00000165665.9	10752	41	90045	4966	10719	-4965	3prime_fragment	FALSE	canonical	3	6	junction_29	5.15363949069005	22	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACTTTGCCTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	42927237	42880103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_42880489_42881008_42881079_42882288_42882603_42883290_42883762_42885852_42886087_42886328_42886409_42886523_42886611_42887328_42887417_42888931_42889100_42889501_42889578_42890691_42890770_42893243_42893345_42895669_42895785_42897757_42897884_42900255_42900342_42901270_42901418_42903169_42903325_42903831_42903868_42904284_42904418_42908869_42909083_42910361_42910468_42911243_42911359_42911652_42911686_42912264_42912403_42912741_42912848_42913153_42913197_42916839_42916939_42917131_42917243_42919311_42919408_42921474_42921550_42927198
54250	chr2	-	1378	6	FSM	ENSMUSG00000026922.14	ENSMUST00000028286.12	1489	6	86	25	-35	-25	multi-exon	FALSE	canonical	0	0	junction_5	292.487674954006	1286	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACCAGAGGTCTCTTTC	9567	False	NA	NA	False	NA	NA	NA	26494258	26483093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
54251	chr5	-	2055	4	Antisense	novelGene_ENSMUSG00000104633.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACGGCTTGAAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	143865764	143858721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_143858914_143860289_143860449_143862036_143862895_143864918
54254	chr5	+	1277	4	NNC	ENSMUSG00000029642.12	novel	1350	4	NA	NA	-280	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	201.746265282794	2039	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGCTTTCCTCTTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	147013579	147048169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_147013712_147014145_147014504_147038038_147038114_147047457
54255	chr19	-	1713	3	NNC	ENSMUSG00000024742.16	novel	2100	2	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	221.5	2	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACCAGAATGTGTCTGA	2198	False	NA	NA	False	NA	NA	NA	10181264	10176506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177909_10178247_10178462_10181167
54256	chr5	+	3305	14	FSM	ENSMUSG00000000148.18	ENSMUST00000041588.13	3333	14	16	12	4	-12	multi-exon	FALSE	canonical	3	71	junction_1	10.6471097836719	58	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTAAAGTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	140690781	140705122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
54258	chr9	-	2388	14	NIC	ENSMUSG00000032312.8	novel	2390	15	NA	NA	58	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_13	43.0998565326625	134	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	57560696	57533928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57559114_57559276_57560559
54259	chr11	-	939	5	Antisense	novelGene_ENSMUSG00000035198.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGGGATAGCAAAGAGT	3271	False	NA	NA	False	NA	NA	NA	101017243	101015057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_101015143_101015245_101015399_101015795_101015944_101016023_101016190_101016856
54260	chr8	+	2115	16	NNC	ENSMUSG00000041438.9	novel	2232	17	NA	NA	1	-66	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	493.835123182717	1	121	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	107620283	107649653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107620345_107621222_107621384_107624691_107624882_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642793_107642895_107645196_107645438_107648803_107648915_107649496
54261	chr6	+	1116	7	NNC	ENSMUSG00000101162.3	novel	595	4	NA	NA	-34155	-1246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	52	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGGCTGGCCTGAGGCTC	2902	False	NA	NA	False	NA	NA	NA	125437231	125471686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125437692_125438196_125438298_125439257_125439386_125440646_125440723_125441352_125441450_125449370_125449475_125471536
54262	chrX	-	1776	6	Antisense	novelGene_ENSMUSG00000015291.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACATGCCCATCAGATC	NA	False	NA	NA	False	NA	NA	NA	73355402	73351296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_73351477_73351735_73351876_73353494_73353736_73353990_73354141_73354243_73354297_73354390
54264	chr5	-	2211	8	Genic_Genomic	ENSMUSG00000104559.2	novel	775	1	NA	NA	327	56752	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACACGCAAGCGTAGCCC	NA	False	NA	NA	False	NA	NA	NA	111535828	111478628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_111478742_111486149_111486293_111494346_111494446_111519175_111519259_111528058_111528175_111530862_111530977_111533385_111533467_111534366
54265	chrX	+	1179	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5605.09585605416	1	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059359	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060978_36061388_36061530_36062039
54267	chrX	-	754	4	NNC	ENSMUSG00000050071.9	novel	866	3	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2490.32211214177	36	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	NA	False	NA	NA	NA	135116246	135114720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135114964_135115059_135115333_135115652_135115730_135116085
54268	chrX	-	2533	4	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	51.8737784327389	254	31	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGTATAATCATTGAAAA	1174	False	NA	NA	False	NA	NA	NA	83486702	83456607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_83458730_83459197_83459397_83473568_83473652_83486573
54269	chr15	+	3025	16	ISM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	8877	35	8576	-35	3prime_fragment	FALSE	canonical	3	193	junction_6	28.1917245540838	1	171	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATGACACAATAAAAATT	NA	False	NA	NA	False	NA	NA	NA	4064741	4184791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
54270	chr11	-	1726	1	Genic_Genomic	ENSMUSG00000018697.15	novel	NA	NA	NA	NA	-562	-23482	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTATGCATGGTACCTGT	NA	False	NA	NA	False	NA	NA	NA	84382938	84381212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_84381200_84382900
54271	chr16	-	1087	6	NNC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	195.104074790866	31	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	False	NA	NA	False	NA	NA	NA	31918548	31903233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_31903445_31904054_31904156_31906111_31906326_31908779_31908938_31911161_31911304_31918287
54272	chr10	+	693	4	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	3606	15	-1736	5prime_fragment	FALSE	canonical	3	6189	junction_1	315.456283289249	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCGAAGCTCTTCTATGGG	2196	False	NA	NA	False	NA	NA	NA	81012479	81014726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514
54273	chr2	-	1642	2	ISM	ENSMUSG00000039536.17	ENSMUST00000149454.2	774	4	1401	-1441	1126	-256	3prime_fragment	FALSE	canonical	3	275	junction_1	0	5	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCACACGTGGCCCTTTA	NA	False	NA	NA	False	NA	NA	NA	166791750	166789724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_166791280_166791663
54275	chr17	+	3231	2	NIC	ENSMUSG00000062691.11	novel	602	5	NA	NA	232	-11	intron_retention	FALSE	canonical	3	1627	junction_1	0	14	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGAAGAAATAACGTGTG	NA	False	NA	NA	False	NA	NA	NA	79224360	79227724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_79227273_79227405
54276	chr11	-	1711	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	-43	0	-43	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	392	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	116734318	116728257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
54277	chr15	+	1547	8	NIC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	11	-900	intron_retention	FALSE	canonical	3	1189	junction_5	80.0703772073196	92	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTATGACACTTCAGTCT	643	False	NA	NA	False	NA	NA	NA	78915084	78921653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920303_78920466_78920639_78920952_78921075_78921342
54279	chr2	+	2061	2	NIC	ENSMUSG00000068264.12	novel	1101	4	NA	NA	38	0	intron_retention	FALSE	canonical	3	39	junction_1	0	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTTGTCCTCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	131052397	131055431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_131053394_131054366
54280	chr16	-	2188	6	FSM	ENSMUSG00000022661.15	ENSMUST00000163230.8	2347	6	165	-6	-13	6	multi-exon	FALSE	canonical	3	12	junction_1	7.98498591107085	36	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTTTTTTCTCTATG	NA	False	NA	NA	False	NA	NA	NA	45229251	45202491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45220584_45220667_45229218
54281	chr4	+	941	6	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	24	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	863.749593342885	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCCCTGTTGTGGAGTTT	3022	False	NA	NA	False	NA	NA	NA	128887169	128905319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901560_128904824
54284	chr11	+	843	4	NNC	ENSMUSG00000017716.16	novel	947	4	NA	NA	28	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	982.309862857269	18	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTAAGCTCTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	117740104	117746559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117740288_117740656_117740690_117743488_117743607_117746050
54286	chr7	-	1258	4	FSM	ENSMUSG00000030869.12	ENSMUST00000139456.2	452	4	-111	-695	5	0	multi-exon	FALSE	canonical	3	4926	junction_1	301.713256070874	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6398	False	NA	NA	False	NA	NA	NA	121701069	121690053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121690909_121692839_121692928_121695831_121695955_121700877
54288	chr11	-	2136	12	Antisense	novelGene_ENSMUSG00000118532.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACCTAGAGAGATAGTCTA	9997	False	NA	NA	False	NA	NA	NA	100462783	100436533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_100436735_100440628_100440765_100441014_100441162_100441781_100441842_100442294_100442461_100444313_100444541_100444689_100444897_100452641_100452731_100454355_100454551_100457732_100457836_100460679_100460767_100462265
54290	chr11	-	1887	9	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	-7826	-104	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	323.270566824448	1	110	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTTCATGAAAAAGCTGC	9891	False	NA	NA	False	NA	NA	NA	55300817	55285429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55286440_55286626_55286776_55289373_55289523_55290019_55290152_55292776_55292890_55296005_55296128_55297335_55297424_55298045_55298106_55300753
54292	chr2	-	2212	2	FSM	ENSMUSG00000087679.3	ENSMUST00000133808.2	2483	2	225	46	225	-46	multi-exon	FALSE	canonical	3	70	junction_1	0	111	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATGAGAGGAATCACCT	NA	False	NA	NA	False	NA	NA	NA	26030308	26026871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26028926_26030150
54293	chr10	-	3060	8	ISM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	36323	0	-534	0	intron_retention	FALSE	canonical	3	74	junction_1	12.2240979801608	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	83448279	83435896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841
54294	chr14	+	936	1	Intergenic	novelGene_578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTGAGTGAATCCCCAAA	2637	False	NA	NA	False	NA	NA	NA	56650726	56651662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_56650700_56651700
54296	chr17	+	922	1	NIC	ENSMUSG00000042099.17	novel	646	5	NA	NA	-1699	-4826	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTCTTTGGGAGCTTCT	2820	False	NA	NA	False	NA	NA	NA	34035181	34036103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34035200_34036100
54297	chr17	+	1397	4	ISM	ENSMUSG00000042099.17	ENSMUST00000234357.2	1640	10	1670	2	-72	1	intron_retention	FALSE	canonical	3	316	junction_1	31.0268700752536	1	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCGTATTGTGTGGATG	6189	False	NA	NA	False	NA	NA	NA	34038550	34041889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34038971_34040742_34040889_34040979_34041181_34041259
54300	SIRV1	-	1269	7	NNC	SIRV1A	novel	1363	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	90	junction_4	2307.32541171712	1	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7605_7698_7815_10282_10367_10647
54301	SIRV4	+	1513	4	NNC	SIRV4C	novel	1567	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	485.873097286387	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	999	3403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV4_+_1347_1678_1886_2389_2632_2686
54303	chr1	-	2053	10	FSM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	-63	369	-63	-28	multi-exon	FALSE	canonical	3	275	junction_6	34.7545183135931	592	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTTATAATAAAACTGCC	NA	False	NA	NA	False	NA	NA	NA	44158031	44146074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
54304	chr2	-	499	1	ISM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	17401	51	17381	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAAGCCCGTGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	154428227	154427728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154427700_154428200
54305	chr16	+	2694	7	FSM	ENSMUSG00000022742.7	ENSMUST00000060077.7	3097	7	383	20	347	-20	multi-exon	FALSE	canonical	3	129	junction_2	26.4916129285394	83	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATTTTATTATAACATAA	NA	False	NA	NA	False	NA	NA	NA	58491037	58500729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_58491314_58492890_58493035_58493698_58493810_58494742_58494885_58495604_58495824_58498307_58498413_58499032
54306	chr11	-	1550	8	Antisense	novelGene_ENSMUSG00000018411.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGGCAATATGAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	104219285	104180469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_104180818_104185681_104185748_104193183_104193235_104197449_104197591_104201099_104201359_104212174_104212255_104213249_104213365_104218795
54307	chr10	+	3538	10	NNC	ENSMUSG00000020024.8	novel	3639	16	NA	NA	-1721	131	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	93.4607595745236	84	91	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTATCTCTGCTGTTT	6088	False	NA	NA	False	NA	NA	NA	94574224	94626186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624485_94624699_94625565
54308	chr12	+	1865	13	FSM	ENSMUSG00000020589.18	ENSMUST00000069066.14	9452	13	15	7572	-15	-2	multi-exon	FALSE	canonical	3	12	junction_2	32.1829621936135	96	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTCGGTTTGTGTCCC	NA	False	NA	NA	False	NA	NA	NA	12312154	12423394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_12312240_12326343_12326417_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
54309	chr6	+	2064	4	FSM	ENSMUSG00000089862.9	ENSMUST00000159433.8	2025	4	-47	8	1	-8	multi-exon	FALSE	canonical	2	17	junction_2	5.43650214343336	71	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGATCCACAAAATGGCT	-37	True	NA	NA	False	NA	NA	NA	8259382	8428752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8426970
54310	chr15	+	1496	10	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	-6	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	342.258223214614	3	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAGAATGTACATTAAG	NA	False	NA	NA	False	NA	NA	NA	80832698	80853329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846908_80851312_80851403_80851789_80851967_80852862
54311	chr3	-	1633	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	-35	1	-35	-1	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	166	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCCTTCTTTGTGTGGC	1577	False	NA	NA	False	NA	NA	NA	89245370	89240697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
54312	chr9	-	1845	15	Antisense	novelGene_ENSMUSG00000036768.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGATGGCCGCAGATT	NA	False	NA	NA	False	NA	NA	NA	122820174	122780150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_122780218_122788181_122788223_122788869_122789054_122792542_122792621_122795011_122795051_122800752_122800850_122804711_122804899_122806907_122807113_122808448_122808659_122808802_122808926_122813862_122813987_122815207_122815285_122815503_122815713_122816908_122817087_122820148
54313	chr17	-	1721	11	FSM	ENSMUSG00000019578.12	ENSMUST00000019722.12	2949	11	24	1204	13	1	multi-exon	FALSE	canonical	3	209	junction_10	25.0960156200143	906	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCCAGTGTTTCATCAG	6330	False	NA	NA	False	NA	NA	NA	56382004	56375248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
54314	chr3	+	1286	4	FSM	ENSMUSG00000048100.14	ENSMUST00000143054.2	2443	4	1	1156	1	-3	multi-exon	FALSE	canonical	3	149	junction_1	10.4986771653491	600	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTACTTGAGTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	108479015	108489382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_108479065_108480195_108480275_108485431_108485530_108488322
54321	chr2	+	1831	11	FSM	ENSMUSG00000027257.14	ENSMUST00000028694.12	1862	11	23	8	-2	-8	multi-exon	FALSE	canonical	3	29	junction_1	20.1345474247622	138	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTGTTGTGAGCGTCTT	4773	False	NA	NA	False	NA	NA	NA	91087180	91095015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91087272_91090208_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
54322	chr2	-	1203	7	NNC	ENSMUSG00000016257.16	novel	1553	6	NA	NA	-7	4	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	315.353593429485	52	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGCTCTTCCCATCTCT	NA	False	NA	NA	False	NA	NA	NA	174314734	174306855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174307305_174307518_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
54323	chr10	-	2473	1	ISM	ENSMUSG00000046841.6	ENSMUST00000053871.5	3089	2	5285	0	5259	0	mono-exon	FALSE	NA	NA	NA	NA	NA	236	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGGGTTCTGAGAACT	NA	False	NA	NA	False	NA	NA	NA	84364641	84362168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_84362200_84364600
54324	chr10	+	3034	24	ISM	ENSMUSG00000025401.10	ENSMUST00000079590.7	3439	27	1628	16	1628	-11	3prime_fragment	FALSE	canonical	2	6	junction_6	3.36837286056462	35	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTTGCTCAGATACATA	NA	False	NA	NA	False	NA	NA	NA	127542666	127556793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127542794_127542995_127543043_127543222_127543287_127543486_127543586_127546018_127546123_127546242_127546391_127546746_127546866_127546952_127547040_127548452_127548519_127548631_127548737_127549589_127549653_127549853_127550055_127550194_127550422_127550749_127550951_127551118_127551213_127551500_127551651_127551745_127551815_127552156_127552232_127554380_127554516_127555119_127555227_127555501_127555635_127555736_127555890_127556021_127556150_127556461
54325	chr13	+	978	2	NIC	ENSMUSG00000049517.9	novel	658	4	NA	NA	-46	3	intron_retention	FALSE	canonical	3	20152	junction_1	0	93	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTTGTGTCTTACTT	NA	False	NA	NA	False	NA	NA	NA	91071289	91072846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_91071866_91072444
54326	chr6	-	1123	5	NNC	ENSMUSG00000042770.9	novel	1058	4	NA	NA	0	-6	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_1	147.403146167238	3046	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGTGGAGACAGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	135145213	135114525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_135115062_135127357_135127429_135129818_135130000_135132148_135132288_135145017
54327	chr9	+	1455	13	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-3	36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2663.88658208682	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGCTGTGTGCAGCCAG	NA	False	NA	NA	False	NA	NA	NA	108765778	108778644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773983_108774457_108774508_108776005_108776067_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777683_108778001_108778083_108778502
54329	chr17	+	1389	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	0	-1	0	1	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	1442	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	NA	False	NA	NA	NA	48037766	48045408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
54330	chr15	+	1118	13	NNC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	2	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	132.318638982655	63	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTTTTCTTTGTGAATA	2237	False	NA	NA	False	NA	NA	NA	102379201	102407322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398230_102407090
54331	chr1	-	1379	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14686	0	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_9	88.3062851670253	341	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	2980	False	NA	NA	False	NA	NA	NA	33677091	33492890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33677047
54332	chr16	+	1360	1	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	8	1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTTTAGATGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	13651953	13653313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_13652000_13653300
54333	chr2	-	1394	9	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-30	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	138.964923631829	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAAAACCAGCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	73044707	72923553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930528_72987159_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
54334	chr4	+	2498	7	FSM	ENSMUSG00000028621.18	ENSMUST00000106758.8	2516	7	9	9	1	-9	multi-exon	FALSE	canonical	2	3	junction_1	4.2687494916219	46	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATTGGTCAGGACACT	940	False	NA	NA	False	NA	NA	NA	106924193	106943014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_106924243_106925808_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
54335	chr9	+	1450	14	NNC	ENSMUSG00000041506.16	novel	1586	15	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	366.401128522073	5	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTTGTTCTCCCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	106354514	106362614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358446_106359019_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
54336	chr6	+	1286	3	FSM	ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	255	-686	-109	686	multi-exon	FALSE	canonical	3	70	junction_1	333	244	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGGACCAGAGCAAGTGGA	NA	False	NA	NA	False	NA	NA	NA	125169018	125171207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125169172_125169478_125169590_125170185
54337	chr1	+	564	2	NNC	ENSMUSG00000044835.16	novel	523	5	NA	NA	23	-19519	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCAGACACACCATAAGA	NA	False	NA	NA	False	NA	NA	NA	160970359	160971346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160970411_160970833
54338	chr9	+	1279	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-2	-150	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7991.80562425053	1	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTTGTGTGACTCTTA	NA	False	NA	NA	False	NA	NA	NA	64080672	64085798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083424_64084222_64084353_64084602_64084760_64085002_64085087_64085196_64085300_64085504
54339	chr12	+	4061	1	Intergenic	novelGene_4338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	80	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTTCTAATGGCCAGCC	NA	False	NA	NA	False	NA	NA	NA	23995172	23999233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_23995200_23999200
54340	chr7	-	1463	4	NNC	ENSMUSG00000030591.18	novel	1983	6	NA	NA	-34	-3	intron_retention	FALSE	canonical	0	0	junction_3	899.146385313438	2	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGGGCCCGAGTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	28879940	28873956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28874948_28875497_28875599_28876490_28876623_28879701
54342	chr16	-	2976	1	Antisense	novelGene_ENSMUSG00000022708.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTTGTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	43442454	43439478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_43439500_43442500
54343	chr16	-	2380	3	FSM	ENSMUSG00000022540.17	ENSMUST00000202640.2	374	3	-1527	-479	96	10	multi-exon	FALSE	canonical	3	479	junction_2	10.5	4	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGTTTGACTCTGGCCTG	NA	False	NA	NA	False	NA	NA	NA	4829509	4826608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4827117_4827341_4827469_4827764
54345	chr17	+	1200	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	2	9	2	-9	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	994	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTAAAATGACTGGTACC	4919	False	NA	NA	False	NA	NA	NA	33848065	33850681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
54346	chr17	+	1783	4	NIC	ENSMUSG00000073423.11	novel	944	5	NA	NA	2	-7	intron_retention	FALSE	canonical	3	399	junction_3	23.8094285712381	20	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATGACTGGTACCTA	4919	False	NA	NA	False	NA	NA	NA	33848065	33850683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_33849054_33849340_33849449_33849549_33849656_33850102
54347	chr12	-	2157	2	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACCGCCGACTGCCAGC	7045	False	NA	NA	False	NA	NA	NA	24760559	24758288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24758443_24758556
54348	chr15	+	1488	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	58	525	3	-522	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	1	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTATAAATAGAATAGTT	242	False	NA	NA	False	NA	NA	NA	38662234	38692165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
54349	chr18	+	4363	9	Antisense	novelGene_ENSMUSG00000053644.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	123	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAAGAAGCCCCTCCGCCA	NA	False	NA	NA	False	NA	NA	NA	56674411	56695309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_56675036_56675089_56678114_56679974_56680016_56681513_56681650_56683361_56683490_56684229_56684313_56692293_56692359_56693846_56693899_56695099
54350	chr2	-	2353	14	ISM	ENSMUSG00000027603.16	ENSMUST00000029131.11	2614	15	8316	12	422	-12	3prime_fragment	FALSE	canonical	2	7	junction_10	4.74933816628712	47	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAACCCTGACTCTGGCT	9023	False	NA	NA	False	NA	NA	NA	155348452	155332310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155333037_155335528_155335629_155336765_155336904_155337561_155337680_155337793_155337944_155340682_155340772_155340933_155341062_155342622_155342711_155344555_155344753_155345047_155345122_155345331_155345400_155346623_155346742_155347874_155348027_155348245
54352	chr17	-	3260	20	NNC	ENSMUSG00000024170.16	novel	3530	21	NA	NA	-10	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	22.5279143554781	2	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGGCTGCTTCTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	25334951	25318547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330150_25333899_25334260_25334386
54353	chr7	+	1248	1	Intergenic	novelGene_2896	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGTCAAGGGCTCACACC	NA	False	NA	NA	False	NA	NA	NA	24111439	24112687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_24111400_24112700
54354	chr9	-	3195	8	NNC	ENSMUSG00000032041.16	novel	2310	7	NA	NA	8	791	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	33.9399229130966	4	77	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTGGCAAGATGGTTCAG	8030	False	NA	NA	False	NA	NA	NA	35111171	35097289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35103100_35103248_35110506_35110616_35111152
54355	chr11	-	2269	5	NIC	ENSMUSG00000001053.16	novel	2367	5	NA	NA	2747	1	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	153.97808285597	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAGGAATGTTATTCC	NA	False	NA	NA	False	NA	NA	NA	51538900	51533888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51538834
54356	chr15	+	2018	11	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	-5	49485	-5	10592	5prime_fragment	TRUE	canonical	3	47	junction_4	7.62954782408499	20	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTGACACATGGTAAT	2902	False	NA	NA	False	NA	NA	NA	88867106	88889866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454
54357	chr2	-	1779	1	Intergenic	novelGene_2685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGAAGTTACCGCCCCATA	NA	False	NA	NA	False	NA	NA	NA	118417558	118415779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_118415800_118417600
54358	chr5	-	1691	6	Antisense	novelGene_ENSMUSG00000104916.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGTAGGAGCCAATCGCAAC	NA	False	NA	NA	False	NA	NA	NA	122520960	122510586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_122510718_122511971_122512079_122516525_122516695_122518040_122518171_122519253_122519555_122520107
54359	chr13	+	1862	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	260	3	18	0	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	22	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTGACATAGCATTTGTC	NA	False	NA	NA	False	NA	NA	NA	36301654	36721564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
54360	chr5	+	1870	7	FSM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	-306	32	-306	-25	multi-exon	FALSE	canonical	3	59	junction_5	17.423642940939	187	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTTGATATTATAAAGCAC	NA	False	NA	NA	False	NA	NA	NA	124250053	124253514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
54362	chr18	-	1292	3	Intergenic	novelGene_4515	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3	32	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAGATGGCCATTTTCA	NA	False	NA	NA	False	NA	NA	NA	21076817	21065409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_21066199_21066472_21066903_21076744
54363	chr3	+	2334	6	FSM	ENSMUSG00000033233.18	ENSMUST00000037409.13	4612	6	-36	2314	-36	-5	multi-exon	FALSE	canonical	2	8	junction_3	2.33238075793812	45	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTAACATCAGACTTCAA	4295	False	NA	NA	False	NA	NA	NA	100829754	100839013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_100830716_100832256_100832991_100834540_100834671_100835370_100835486_100837132_100837260_100838746
54364	chr9	-	2794	16	FSM	ENSMUSG00000047766.16	ENSMUST00000114034.9	2779	16	-30	15	10	-5	multi-exon	FALSE	canonical	1	5	junction_10	6.23965811029205	36	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGTTAAAAAAAAAAGTCCA	3505	False	NA	NA	False	NA	NA	NA	60595431	60494526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_60495175_60500888_60501043_60505368_60505479_60508585_60508772_60509861_60510100_60517540_60517705_60522376_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60592317_60592406_60594421_60594479_60595094
54365	chr6	+	3473	15	NIC	ENSMUSG00000030263.14	novel	1761	17	NA	NA	1	-5	intron_retention	FALSE	canonical	1	3	junction_1	14.3001712562886	7	77	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGTGCAGTGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	145091203	145120649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_145091249_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145115517_145117229_145117431_145117709_145117812_145119429_145119538_145120162
54366	chr15	-	4462	16	FSM	ENSMUSG00000022335.18	ENSMUST00000160248.8	3866	16	-27	-569	-9	11	multi-exon	FALSE	canonical	0	0	junction_3	8.74731704899025	1	206	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCCCCCCATTTAGGGGG	NA	False	NA	NA	False	NA	NA	NA	68130714	67955601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_67956411_67973319_67973451_67976804_67976929_67982292_67982412_67990784_67990924_68018351_68018441_68037601_68037776_68040563_68040714_68041984_68042073_68050559_68050793_68051565_68053008_68056269_68056421_68058899_68059086_68084441_68084694_68096615_68096793_68130516
54368	chr2	+	679	1	Genic_Genomic	ENSMUSG00000018209.16	novel	NA	NA	NA	NA	-580	-16171	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGCCTGCAGGCCCGGA	NA	False	NA	NA	False	NA	NA	NA	163911661	163912340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_163911700_163912300
54370	chr17	+	705	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	66	0	66	0	multi-exon	FALSE	canonical	3	3024	junction_1	2440.4692555941	3	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6697576	6703695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
54371	chr17	+	2054	14	NIC	ENSMUSG00000041831.18	novel	1504	9	NA	NA	1	3	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	19.1533827562109	13	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCCCAGCATTTATTAA	NA	False	NA	NA	False	NA	NA	NA	6930413	7005446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_6930610_6943610_6943830_6954660_6954726_6967051_6967104_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
54372	chr5	-	1709	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	4	-1	intron_retention	FALSE	canonical	3	16	junction_6	109.212393704998	1	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGGATATTTGTTTTC	5327	False	NA	NA	False	NA	NA	NA	143314953	143302252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143302588_143305985_143306046_143306151_143306231_143307523_143307650_143309886_143310714_143311853_143311979_143314201_143314326_143314920
54373	chr14	-	3585	1	ISM	ENSMUSG00000055538.8	ENSMUST00000069180.8	4556	4	53804	9	4557	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	38	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGATGGAGGCTCGTGA	NA	False	NA	NA	False	NA	NA	NA	25715659	25712074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_25712100_25715700
54374	chr19	+	1640	11	FSM	ENSMUSG00000071657.13	ENSMUST00000160556.8	1795	11	156	-1	94	0	multi-exon	FALSE	canonical	0	0	junction_6	47.8256207487158	320	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	NA	False	NA	NA	NA	8816847	8826031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
54375	chr12	-	741	1	FSM	ENSMUSG00000043483.5	ENSMUST00000052882.5	636	1	11	-116	11	116	mono-exon	FALSE	NA	NA	NA	NA	NA	43	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGTTGGATGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96889821	96889080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_96889100_96889800
54376	chr17	+	1810	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	201	303	201	-303	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATCCAAATACCCAGGAT	NA	False	NA	NA	False	NA	NA	NA	80435100	80492227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
54377	chr7	+	1140	6	FSM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	-27	-1	-16	0	multi-exon	FALSE	canonical	3	431	junction_1	28.3125413906982	1251	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30008185	30013729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013343
54378	chr5	+	1449	10	NNC	ENSMUSG00000029089.9	novel	1616	9	NA	NA	15	89	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	37.7225085899783	118	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCTATTACTATTTGT	NA	False	NA	NA	False	NA	NA	NA	48529685	48545987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48541730_48541779_48545444
54379	chr17	+	1878	10	NIC	ENSMUSG00000024101.16	novel	2905	11	NA	NA	-20	-62	intron_retention	FALSE	canonical	3	38	junction_1	28.6709729754333	25	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACCCAAGCCAACAGTGG	NA	False	NA	NA	False	NA	NA	NA	66418619	66426380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66418645_66420857_66421012_66422665_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
54380	chrX	-	2427	7	NNC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	19	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	107.136076505017	1	76	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATACTGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	69520767	69503364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_69504899_69505796_69505935_69506517_69506628_69508616_69508693_69510759_69510968_69513723_69513901_69520583
54381	chr4	+	1795	1	Antisense	novelGene_ENSMUSG00000028487.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCCAGCAAACTATTTATT	NA	False	NA	NA	False	NA	NA	NA	84191576	84193371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_84191600_84193400
54382	chr4	-	1154	1	Antisense	novelGene_ENSMUSG00000043411.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	65	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTACAAGCACTGAATGCT	7041	False	NA	NA	False	NA	NA	NA	137350675	137349521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_137349500_137350700
54383	chr16	-	1386	11	NNC	ENSMUSG00000058240.15	novel	1727	12	NA	NA	1	50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	600.401898731175	1	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTTTGCTATACCAAAC	8303	False	NA	NA	False	NA	NA	NA	91514356	91486363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487628_91489473_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91509040_91509156_91511636_91511715_91514291
54384	chr10	-	1450	5	NNC	ENSMUSG00000004359.17	novel	646	6	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	210.086291794586	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAGCATTTGTAGACT	NA	False	NA	NA	False	NA	NA	NA	88520877	88511137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_88511933_88513361_88513757_88514385_88514499_88515720_88515818_88520827
54385	chr6	-	1668	7	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	161.448392167074	6	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4590	False	NA	NA	False	NA	NA	NA	49240967	49220857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49221633_49222446_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
54387	chr5	+	1216	5	FSM	ENSMUSG00000040532.15	ENSMUST00000148831.3	731	5	-291	-194	-9	0	multi-exon	FALSE	canonical	3	19	junction_2	251.938980707631	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	NA	False	NA	NA	NA	135038535	135041024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135038972_135039740_135039915_135040094_135040235_135040337_135040520_135040740
54389	chr15	+	1032	7	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-22	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	716.02188048504	148	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959425	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962344_78973807_78974162_78977536_78977618_78978400
54390	chr6	+	2673	12	NIC	ENSMUSG00000038022.12	novel	4270	18	NA	NA	95	6152	intron_retention	TRUE	canonical	1	1	junction_8	5.33040553246147	12	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTGTCTGCTATCCTGT	NA	False	NA	NA	False	NA	NA	NA	55180462	55261762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_55180555_55188234_55188355_55193491_55193728_55195206_55195454_55200982_55201354_55232595_55232652_55237519_55237627_55239703_55239821_55240760_55240850_55253538_55253641_55255031_55256136_55261730
54391	chr12	-	1588	6	NIC	ENSMUSG00000062352.16	novel	1701	7	NA	NA	-26	11	intron_retention	FALSE	canonical	3	43	junction_5	85.3918028852887	19	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGGGGTCTGGACAG	NA	False	NA	NA	False	NA	NA	NA	21336124	21320693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
54392	chr2	-	1685	14	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	-23	5440	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	70.7741637076745	1	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGAGTGCTGCTGGGATG	NA	False	NA	NA	False	NA	NA	NA	62242598	62189620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62189675_62190628_62190697_62190952_62191048_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
54393	chr1	+	1576	1	FSM	ENSMUSG00000061024.9	ENSMUST00000072079.9	2048	1	470	2	470	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	317	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTATTTGCATTATTTTTG	NA	False	NA	NA	False	NA	NA	NA	9616102	9617678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_9616100_9617700
54394	chr1	+	1618	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	-27	938	0	-731	multi-exon	FALSE	canonical	3	145	junction_1	0	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTCTAATTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	155916635	155928544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_155916749_155927039
54395	chr9	+	1595	11	NIC	ENSMUSG00000036138.17	novel	1762	12	NA	NA	-4	-7	combination_of_known_splicesites	FALSE	canonical	2	7	junction_4	84.7362968272747	367	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTTTGGTGCTTGTCAT	7844	False	NA	NA	False	NA	NA	NA	119170475	119179357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
54396	chr14	-	1644	14	NNC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	-16	4176	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	152.811095046239	5	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTCTTATTTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	26692478	26668906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_26669121_26671398_26671588_26672508_26672668_26672913_26673039_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26689309_26689496_26692357
54397	chr4	-	1146	8	NNC	ENSMUSG00000063800.6	novel	1516	10	NA	NA	41	-3	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	189.176302610522	52	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTCTCTGGCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	108436492	108422072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108434240_108434286_108436181
54399	chr2	+	2590	18	FSM	ENSMUSG00000026879.15	ENSMUST00000201185.4	2607	18	19	-2	3	0	multi-exon	FALSE	canonical	3	7	junction_1	7.49855810822468	49	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCCCAGGTGTCTCACT	NA	False	NA	NA	False	NA	NA	NA	35146410	35197904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_35146486_35156831_35156916_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
54400	chr8	-	2205	1	NIC	ENSMUSG00000006589.9	novel	849	5	NA	NA	8	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	19	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATGCTGCTTCTCCTCA	NA	False	NA	NA	False	NA	NA	NA	123303584	123301379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_123301400_123303600
54401	chr10	-	1137	6	FSM	ENSMUSG00000004667.19	ENSMUST00000152843.2	900	6	-11	-226	-2	0	multi-exon	FALSE	canonical	3	2552	junction_2	164.012926319848	365	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5598	False	NA	NA	False	NA	NA	NA	79875546	79871782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_79872136_79872360_79872433_79872597_79872808_79873021_79873219_79874272_79874448_79875416
54402	chr19	+	1937	3	Fusion	ENSMUSG00000108414.2_ENSMUSG00000065280.3_ENSMUSG00000065392.3	novel	478	5	NA	NA	0	-1	intron_retention	FALSE	canonical	3	1003	junction_1	27	1	110	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTATTGTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	8701503	8703804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8702621_8702848_8703467_8703602
54403	chr6	-	3323	4	ISM	ENSMUSG00000051586.18	ENSMUST00000151602.4	992	8	7299	-3041	6387	-18	3prime_fragment	FALSE	canonical	3	24	junction_1	1.63299316185545	53	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCGGTTTTTTTTTTA	5510	False	NA	NA	False	NA	NA	NA	120928297	120908700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_120911814_120911893_120911968_120912134_120912235_120928261
54404	chr19	+	2311	3	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	24747	6	24747	-6	3prime_fragment	FALSE	canonical	3	77	junction_1	18.5	109	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCAGCCTGAGGGCTGTG	1760	False	NA	NA	False	NA	NA	NA	47242096	47247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_47242248_47245150_47245298_47245855
54405	chr17	+	450	4	ISM	ENSMUSG00000024201.13	ENSMUST00000086835.12	4360	22	43031	16620	-3173	120	internal_fragment	FALSE	canonical	3	152	junction_2	14.290634073484	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTCGCGCACCTCCATC	2747	False	NA	NA	False	NA	NA	NA	56676121	56693239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56676173_56679423_56679528_56682853_56682992_56693082
54406	chr7	-	1800	4	NIC	ENSMUSG00000030615.13	novel	799	5	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	739	junction_3	32.6904675198546	15	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGTCTGCAACATTAAAA	1688	False	NA	NA	False	NA	NA	NA	90106394	90099912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_90100144_90100750_90102109_90104631_90104728_90106279
54408	chr9	+	3504	19	NNC	ENSMUSG00000032280.17	novel	4114	20	NA	NA	-24	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	59.6916200665792	9	16	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATCTCCTTTGATAAG	NA	False	NA	NA	False	NA	NA	NA	61280638	61325113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_61280744_61281234_61281336_61281796_61281861_61282810_61282856_61300484_61300548_61301889_61301965_61309134_61309342_61314631_61314756_61315561_61315613_61316047_61316201_61316556_61316699_61317217_61317418_61318544_61318622_61319546_61319797_61320136_61320385_61321224_61321373_61321992_61322144_61322843_61322921_61323890
54409	chr10	-	2155	7	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-13	-205	intron_retention	FALSE	non_canonical	0	0	junction_2	429.67523265317	1	135	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTGTTGTTGTTTCT	8234	False	NA	NA	False	NA	NA	NA	128540913	128534019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128535080_128535340_128535545_128537125_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
54410	chr3	-	1395	12	NNC	ENSMUSG00000068921.15	novel	1409	13	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	397.967646843163	3	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88858438	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835753_88835837_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
54411	chr8	-	1564	11	NNC	ENSMUSG00000002949.16	novel	1790	13	NA	NA	-2364	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	165.359124332466	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAAGAGCAGTTTGAACG	5298	False	NA	NA	False	NA	NA	NA	4320026	4309741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317912_4318014_4318299_4318381_4319854
54415	chr5	-	2290	4	ISM	ENSMUSG00000004530.13	ENSMUST00000164980.8	3136	9	61245	74	160	-74	3prime_fragment	FALSE	canonical	3	905	junction_1	27.0924343682881	1	127	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTATAGAGTGGCCATA	8366	False	NA	NA	False	NA	NA	NA	113985521	113980570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494
54416	chr12	+	928	8	NNC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	6	-322	intron_retention	FALSE	canonical	0	0	junction_7	674.044054758368	1	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTCACACTTTTGTGAC	NA	False	NA	NA	False	NA	NA	NA	80992313	80996949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996724
54417	chr1	+	3546	13	ISM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	10	24718	3	1	5prime_fragment	FALSE	canonical	3	11	junction_2	5.22812904711937	18	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATTGTTGGATTGTAGT	NA	False	NA	NA	False	NA	NA	NA	189460474	189584174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_189460862_189518832_189519146_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220
54418	chr3	+	1681	10	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	86	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	380.643023200362	1	86	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGAGATCAAAGGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	97066178	97083843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081279_97082947_97083110_97083646
54419	chr17	+	2701	20	NIC	ENSMUSG00000024036.17	novel	3389	20	NA	NA	6	10	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	25.6401693159089	84	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCCCACATATAATACA	NA	False	NA	NA	False	NA	NA	NA	31515194	31569679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_31515230_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
54420	chr2	-	3636	5	NIC	ENSMUSG00000036093.8	novel	5239	6	NA	NA	249	609	intron_retention	FALSE	canonical	3	352	junction_3	7.53325958665968	1	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAACAATTGTTAAGCTG	5004	False	NA	NA	False	NA	NA	NA	52314664	52291789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_52295070_52302073_52302158_52306075_52306224_52306647_52306709_52314601
54422	chr10	-	1060	7	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1705.84413772836	4	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAACCCATCTATTCCT	NA	False	NA	NA	False	NA	NA	NA	90959890	90952674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954721_90957863_90957906_90959419_90959569_90959777
54423	chr6	-	3784	3	NNC	ENSMUSG00000108435.2	novel	963	2	NA	NA	-3563	-315	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	94	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCATGACTTCCGGCCGC	9516	False	NA	NA	False	NA	NA	NA	72329004	72324326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72324498_72324574_72324693_72325509
54424	chr2	+	1472	11	NNC	ENSMUSG00000000308.15	novel	1518	10	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	68.4940873360614	197	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	800	False	NA	NA	False	NA	NA	NA	121188255	121194218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121188341_121189276_121189483_121190059_121190150_121190196_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
54425	chr19	+	1752	13	NNC	ENSMUSG00000024949.18	novel	1000	8	NA	NA	57	256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	445.412004964692	2	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGTTGGTCTCTTATAA	1526	False	NA	NA	False	NA	NA	NA	6414643	6426066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414800_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424870_6425962
54426	chr5	+	3034	5	NNC	ENSMUSG00000102644.6	novel	650	5	NA	NA	-1	-14	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_2	9.28372231381357	63	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGTCTAATAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	92110747	92119911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_92110835_92111541_92111645_92112954_92113164_92114310_92114434_92117399
54427	chr4	+	1626	2	Antisense	novelGene_ENSMUSG00000042367.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCCTCGGTGAGGCTCC	4266	False	NA	NA	False	NA	NA	NA	127219027	127224383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127220557_127224286
54428	chr7	-	1869	7	NNC	ENSMUSG00000059772.13	novel	3152	6	NA	NA	8	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.8550321898243	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTAGCCGGGCGTGGTGG	4995	False	NA	NA	False	NA	NA	NA	126294948	126289839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126290147_126290221_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126291924_126291977_126294596
54429	chr10	-	2148	21	NNC	ENSMUSG00000025357.9	novel	2834	24	NA	NA	200	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.0875728436579	2	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	9942	False	NA	NA	False	NA	NA	NA	128579744	128556002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128556309_128558360_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128579664
54431	chr16	-	1994	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1330	0	569	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1	114	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTGTTTTTACAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	22084676	22064628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
54436	chrX	+	3318	15	ISM	ENSMUSG00000031398.14	ENSMUST00000004326.4	6943	33	8564	195	-636	-189	3prime_fragment	FALSE	canonical	3	16	junction_6	6.08485909484202	31	15	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTCAGTGCATGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	73381235	73388100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73381427_73381516_73381661_73381739_73381975_73382064_73382208_73382295_73382553_73382675_73382743_73382847_73382995_73383071_73383232_73383380_73383485_73383670_73383768_73384036_73384228_73384448_73384619_73385141_73385355_73385526_73385678_73387052
54437	chr9	+	2667	17	NNC	ENSMUSG00000032308.10	novel	2826	16	NA	NA	-39	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	12.5847129486532	42	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTATTTTCCATACTTA	NA	False	NA	NA	False	NA	NA	NA	57496821	57503496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57496970_57497606_57497748_57497943_57498065_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225_57503175_57503226
54438	chr16	+	1585	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	4	1012	4	-2	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	144	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCATGTTCAGAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	49519599	49584477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
54439	chr7	-	627	7	ISM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	31	1209	0	-148	5prime_fragment	FALSE	canonical	3	3290	junction_3	195.846382543961	72	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGAGCATTAAGCCCAA	NA	False	NA	NA	False	NA	NA	NA	28681208	28672005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
54444	chr11	+	1199	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	8	639	8	-639	multi-exon	FALSE	canonical	3	68	junction_2	16.5	206	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTCCAGGGCCAGTGGC	NA	False	NA	NA	False	NA	NA	NA	5712136	5731237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_5712241_5715508_5715572_5730205
54447	chr4	-	1367	11	NNC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-15	126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	208.938747004954	8	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCCTGGACAGTCTTTA	5	True	NA	NA	False	NA	NA	NA	48279573	48194363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_48194710_48196802_48196859_48205159_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
54449	chr5	+	660	3	Intergenic	novelGene_879	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.5	3	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCCCAGTGGGAAATAG	NA	False	NA	NA	False	NA	NA	NA	143151618	143154590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_143152054_143153653_143153818_143154529
54450	chrX	-	781	6	NIC	ENSMUSG00000031320.10	novel	975	7	NA	NA	11	-27	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	6497.58697979488	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGATTAAACAGCATGGTG	NA	False	NA	NA	False	NA	NA	NA	101232931	101228573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_101228738_101229108_101229267_101230001_101230174_101231427_101231609_101231899_101231978_101232903
54451	chr3	-	2324	14	NNC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	12	-291	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	84.0383119167828	14	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATCAGACTCCTAAGCG	NA	False	NA	NA	False	NA	NA	NA	36054815	36027819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_36028440_36029943_36030054_36030495_36030726_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
54452	chr1	-	785	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	-21	33	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAACAACAACAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	86837426	86836481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_86836676_86836835
54453	chr2	-	1045	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1437.38539210335	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9573	False	NA	NA	False	NA	NA	NA	10085252	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069109_10073458_10073553_10074503_10074539_10085158
54454	chr12	+	2758	3	NIC	ENSMUSG00000037957.15	novel	581	5	NA	NA	9	-3	intron_retention	FALSE	canonical	1	1	junction_2	74.5	186	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAGTTTGTAGAACTCT	5381	False	NA	NA	False	NA	NA	NA	110704460	110761459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_110704712_110745729_110746325_110759547
54456	chr2	+	1221	9	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	-38	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	595.241967606452	12	3	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAATACTACCAATTCT	NA	False	NA	NA	False	NA	NA	NA	151336171	151353218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151336333_151338503_151338602_151342634_151342710_151344928_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351523_151352937
54457	chr2	-	1349	5	NNC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	127.660683062562	30	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119493274	119485926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493191
54458	chr12	-	777	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	499	17	6	-17	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTCTCACTGAGT	NA	False	NA	NA	False	NA	NA	NA	80690616	80680812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
54460	chr10	+	1367	10	NNC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	6	81	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	541.557105728872	1	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGCGCCTTGGTTGTTCT	2295	False	NA	NA	False	NA	NA	NA	79795994	79803526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79796207_79796835_79796947_79800759_79800884_79801057_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
54461	chr5	-	1281	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	87.5293536769354	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATCATTGTCTGTG	5302	False	NA	NA	False	NA	NA	NA	143314978	143302237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314201_143314326_143314920
54462	chr6	+	2794	5	FSM	ENSMUSG00000045466.19	ENSMUST00000140719.2	2823	5	30	-1	30	1	multi-exon	FALSE	canonical	2	2	junction_3	12.1937483982572	71	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCCTGTCTTGCCTTGA	9800	False	NA	NA	False	NA	NA	NA	47930410	47942232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_47930517_47932750_47933105_47934409_47934659_47939458_47939567_47940255
54465	chr11	+	3753	37	NNC	ENSMUSG00000039230.15	novel	3906	39	NA	NA	32	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	95.102284117914	1	243	24	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATGCGTGCTTTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	121342806	121507905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352626_121366375_121366498_121383383_121383430_121384588_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469620_121473578_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487272_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494567_121499333_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
54466	chr1	-	2418	4	FSM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	76	7	-31	-7	multi-exon	FALSE	canonical	3	108	junction_1	8.37987005998436	129	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCGTACCTGACTGATTCT	NA	False	NA	NA	False	NA	NA	NA	172034295	172024301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_172026258_172026677_172026834_172027974_172028149_172034163
54467	chr17	-	2904	1	Antisense	novelGene_ENSMUSG00000046201.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGGAGGCTGAAACTAAG	NA	False	NA	NA	False	NA	NA	NA	3201435	3198531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_3198500_3201400
54469	chr7	-	1231	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1359	0	0	0	3prime_fragment	FALSE	canonical	3	40	junction_5	113.141327550988	996	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2919	False	NA	NA	False	NA	NA	NA	101518531	101507537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363
54472	chr4	-	1351	5	NNC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	9	-139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.68316407446	10	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCCGGGGTCCAAGGAGC	12	True	NA	NA	False	NA	NA	NA	41741311	41738631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41739387_41739488_41739581_41740549_41740643_41740775_41740977_41741101
54473	chr5	+	2940	4	NNC	ENSMUSG00000102644.6	novel	1996	4	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	5.24933858267454	64	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTGGGTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	92110752	92119925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_92110835_92112954_92113164_92114310_92114434_92117399
54474	chr16	+	1932	9	NNC	ENSMUSG00000022971.19	novel	3047	9	NA	NA	28	-886	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	22.3407559182764	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGGTCTCCAGGTGTC	NA	False	NA	NA	False	NA	NA	NA	91169698	91201368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644_91190802_91196083_91196234_91200597
54475	chr11	+	3455	8	NIC	ENSMUSG00000020712.12	novel	3511	8	NA	NA	-6	-57	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	2.1189138534559	15	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGTCTCACCCCCCCCC	7185	False	NA	NA	False	NA	NA	NA	106167491	106179514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106167620_106172728_106172805_106173612_106173880_106174868_106175190_106175381_106175661_106176197_106176468_106177201_106177445_106177643
54476	chr9	-	960	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	63	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7789.15054338405	3	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAGAAATCTGTGTTGG	7163	False	NA	NA	False	NA	NA	NA	78388943	78385744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386813_78386959_78387013_78388920
54477	chr14	+	1187	8	Antisense	novelGene_ENSMUSG00000041028.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTGTCCGGAGACACACA	NA	False	NA	NA	False	NA	NA	NA	36843905	36855684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_36844184_36847117_36847292_36847862_36848060_36849553_36849653_36852592_36852741_36853510_36853607_36855127_36855227_36855588
54478	chr9	+	1101	9	NNC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	627.534859589489	50	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTATGGTGAAAGGATACT	NA	False	NA	NA	False	NA	NA	NA	54858081	54865313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864210_54864964
54479	chr11	-	1426	10	NNC	ENSMUSG00000020400.18	novel	2787	19	NA	NA	-3336	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	88.1973096647441	1	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	NA	False	NA	NA	False	NA	NA	NA	54815237	54801612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54802109_54802297_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201
54480	chr17	-	899	7	FSM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	1	-5	1	0	multi-exon	FALSE	canonical	3	704	junction_1	947.318613537998	1918	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	30831632	30811834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
54481	chr9	-	2213	12	Genic_Genomic	ENSMUSG00000090317.2	novel	922	1	NA	NA	-25217	-347	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCGCGCCTGCGTCCAGCG	NA	False	NA	NA	False	NA	NA	NA	78381285	78355493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_78355792_78356699_78356899_78356997_78357117_78360044_78360334_78364489_78364604_78364696_78364886_78365195_78365329_78368114_78368318_78368799_78368967_78372157_78372282_78377909_78378073_78381070
54482	chr16	-	1246	5	FSM	ENSMUSG00000022674.16	ENSMUST00000096234.4	609	5	-8	-629	-8	-175	multi-exon	FALSE	canonical	2	4	junction_4	568.153808400507	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAGAGACTGTGCTATT	NA	False	NA	NA	False	NA	NA	NA	15412362	15373543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15411554_15411623_15412323
54483	chr1	+	1906	10	Fusion	ENSMUSG00000026096.15_ENSMUSG00000100679.2	novel	1067	5	NA	NA	1867	-10	multi-exon	FALSE	canonical	0	0	junction_1	66.6433292485702	2	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAGTCAAGAATCATT	NA	False	NA	NA	False	NA	NA	NA	53338136	53365316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_53338312_53338524_53338657_53344613_53344766_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
54484	chr10	-	1679	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	-81	4	-52	2	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	410	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTGGCTCTACCTTGTT	NA	False	NA	NA	False	NA	NA	NA	41366417	41363171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
54485	chr17	-	1930	13	Antisense	novelGene_ENSMUSG00000019487.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	267	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCCCAGGGCAGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	57570427	57556481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_57556572_57557740_57557857_57560260_57560408_57560494_57560560_57561056_57561160_57561257_57561389_57562017_57562165_57562272_57562466_57564232_57564343_57568287_57568421_57568637_57568787_57569354_57569471_57569997
54486	chr9	-	1223	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	151	49	-4	7	multi-exon	FALSE	canonical	3	236	junction_1	0	932	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTGTGTGATTATTTT	NA	False	NA	NA	False	NA	NA	NA	21202453	21199754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21200629_21202104
54487	chr4	-	1874	11	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-3	-5	combination_of_known_splicesites	FALSE	canonical	3	11	junction_10	96.0689856301189	54	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTTCCTGTCTCCATG	NA	False	NA	NA	False	NA	NA	NA	147952983	147945252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952825
54489	chr10	-	2519	1	Intergenic	novelGene_3518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTCCCCAATGGAGGAGC	NA	False	NA	NA	False	NA	NA	NA	97119109	97116590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_97116600_97119100
54490	chr17	+	2473	15	ISM	ENSMUSG00000024300.18	ENSMUST00000173426.2	3667	18	3368	2	3368	0	3prime_fragment	FALSE	canonical	1	4	junction_4	23.6147869620987	150	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAGAAGTAAATTACTGAG	NA	False	NA	NA	False	NA	NA	NA	33804944	33826736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_33805258_33807076_33807163_33809801_33809884_33811894_33812002_33812994_33813094_33813196_33813342_33816914_33817030_33817116_33817287_33820024_33820171_33820632_33820780_33820915_33821065_33821499_33821584_33823230_33823427_33823523_33823694_33826272
54491	chr4	+	2083	11	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.3	1	88	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGCACATGACAACCTGT	NA	False	NA	NA	False	NA	NA	NA	135052517	135072479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135052589_135054399_135054537_135056687_135056831_135059038_135059117_135059471_135059552_135065115_135065392_135067814_135067934_135068157_135068349_135069682_135069885_135071174_135071291_135071809
54492	chr7	-	3021	4	FSM	ENSMUSG00000063535.8	ENSMUST00000032622.9	3028	4	9	-2	9	2	multi-exon	TRUE	canonical	3	13	junction_1	4.32049379893857	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGGTTGCGTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	7139745	7133671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_7136168_7137165_7137250_7138290_7138418_7139431
54494	chr9	-	1701	10	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-9	216	combination_of_known_junctions	FALSE	canonical	3	9	junction_7	75.0497777198738	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATATTTGGATTTTTT	9280	False	NA	NA	False	NA	NA	NA	26910813	26886455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26902535_26902706_26903455_26903557_26910689
54495	chr15	+	1602	8	FSM	ENSMUSG00000052369.9	ENSMUST00000064200.9	1623	8	21	0	-5	0	multi-exon	FALSE	canonical	3	51	junction_1	38.9117263685331	217	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7702	False	NA	NA	False	NA	NA	NA	97862131	97868156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_97862385_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
54496	chr8	-	1570	1	NIC	ENSMUSG00000064325.5	novel	1173	6	NA	NA	22929	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTGTGCCCTTTTAAA	6584	False	NA	NA	False	NA	NA	NA	80694049	80692479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_80692500_80694000
54497	chr6	-	1180	7	NIC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	308.522104376476	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	142453683	142435974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_142436331_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
54498	chr1	-	1418	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	53	916	0	-13	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATCCTGATCAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	161078736	161068597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
54499	chr7	-	2227	18	NNC	ENSMUSG00000002968.10	novel	2619	18	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	220.279470179813	87	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCGGCTCCCGTGACTGA	7013	False	NA	NA	False	NA	NA	NA	44541778	44528809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533668_44534014_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
54500	chrX	+	1967	12	NIC	ENSMUSG00000031065.15	novel	3120	16	NA	NA	-842	-987	intron_retention	FALSE	canonical	3	1580	junction_1	83.8839221585055	2	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAACCACTGGCCTGGCC	2116	False	NA	NA	False	NA	NA	NA	20559679	20565051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562381_20562585_20562707_20562786_20562885_20562969_20563204_20563358_20563450_20564689
54501	chr8	-	2276	5	NNC	ENSMUSG00000050751.15	novel	2824	7	NA	NA	-993	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	40.5732362524855	96	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTTAGTATGTGATTTT	NA	False	NA	NA	False	NA	NA	NA	125103278	125095788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848_125103030_125103124
54502	chr1	-	181	1	Genic_Genomic	ENSMUSG00000038079.15	novel	NA	NA	NA	NA	-10	-10071	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGAAGGGGTCAGATTGGG	4024	False	NA	NA	False	NA	NA	NA	59159281	59159100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_59159100_59159300
54503	chr3	+	1526	5	Antisense	novelGene_ENSMUSG00000062127.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAACACTGCAACACAAGA	3881	False	NA	NA	False	NA	NA	NA	104912481	104946296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104913445_104915263_104915374_104918510_104918739_104939967_104940077_104946180
54504	chr8	+	1166	5	Antisense	novelGene_ENSMUSG00000002908.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	7	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCAGACGGGCAAGGGCG	NA	False	NA	NA	False	NA	NA	NA	71305299	71315655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_71305709_71307260_71307360_71307636_71308124_71314309_71314420_71315594
54505	chr15	+	1245	7	Antisense	novelGene_ENSMUSG00000022241.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTCTCGCCAGGACCGT	NA	False	NA	NA	False	NA	NA	NA	11383816	11388505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_11384327_11385152_11385288_11387292_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383
54506	chr2	-	1021	6	NNC	ENSMUSG00000060703.13	novel	1354	6	NA	NA	267	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	31.6012657974329	461	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	4269	False	NA	NA	False	NA	NA	NA	60114495	60082336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_60082836_60085414_60085442_60087372_60087548_60088226_60088344_60102445_60102557_60114403
54507	chr16	+	4849	16	ISM	ENSMUSG00000034206.16	ENSMUST00000054034.7	8552	30	-18	33225	-18	350	5prime_fragment	FALSE	canonical	2	7	junction_9	8.3495841546484	15	48	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGCCCAAACTCACAGAG	3730	False	NA	NA	False	NA	NA	NA	36832129	36882554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_36832422_36833468_36833649_36835440_36835572_36837560_36837718_36843095_36843205_36848131_36848352_36849704_36849853_36853753_36853901_36855158_36855372_36860844_36860982_36862083_36862289_36862475_36862619_36865099_36865294_36866111_36866237_36868900_36869145_36880350
54509	chr5	+	3175	2	Intergenic	novelGene_700	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGACAGCAGGAGGCTGA	NA	False	NA	NA	False	NA	NA	NA	33689561	33692805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_33689970_33690038
54510	chrX	+	1651	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	95	6	33	2	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	8	41	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	NA	False	NA	NA	NA	154045533	154080644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
54511	chr11	+	2003	11	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	23	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	360.013333086429	2	101	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCTCCTTGTGCACGGT	NA	False	NA	NA	False	NA	NA	NA	98573439	98586800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581471_98584175_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
54512	chr13	-	2773	11	NNC	ENSMUSG00000039233.13	novel	1853	17	NA	NA	-477	-3	intron_retention	FALSE	canonical	0	0	junction_4	52.70721013296	1	95	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATTGATTTCTCTGCCC	NA	False	NA	NA	False	NA	NA	NA	14184906	14172540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14177144_14177233_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199
54513	chr4	-	2604	10	FSM	ENSMUSG00000032870.9	ENSMUST00000043200.8	2905	10	290	11	290	-11	multi-exon	TRUE	canonical	3	186	junction_3	19.2841007882109	87	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGACCCTTTTTGCTCGG	NA	False	NA	NA	False	NA	NA	NA	120874154	120825524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120826862_120829086_120829404_120830289_120830456_120831582_120831690_120832568_120832651_120834147_120834235_120839323_120839403_120840303_120840390_120842391_120842526_120873945
54514	chr5	+	2980	3	NNC	ENSMUSG00000029265.5	novel	3085	3	NA	NA	78	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	100.5	1	152	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAATTGTTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	108416840	108428384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108417676_108423434_108423599_108426403
54515	chrX	+	1581	11	FSM	ENSMUSG00000031105.17	ENSMUST00000114936.8	1582	11	1	0	1	0	multi-exon	FALSE	canonical	3	5	junction_2	43.3798340245787	169	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	47712642	47751171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_47712706_47712838_47713084_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
54519	chr7	+	2682	1	FSM	ENSMUSG00000106236.3	ENSMUST00000199248.3	77	1	-288	-2317	-288	2317	mono-exon	FALSE	NA	NA	NA	NA	NA	4	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAAACTGTATGGACA	NA	False	NA	NA	False	NA	NA	NA	30251964	30254646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30252000_30254600
54520	chr4	-	1836	18	Antisense	novelGene_ENSMUSG00000076444.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGATGATCTCAGGGTC	NA	False	NA	NA	False	NA	NA	NA	108904912	108858337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108858361_108870705_108871035_108875030_108875118_108876154_108876307_108881398_108881473_108884630_108884728_108885946_108886068_108889643_108889705_108890486_108890559_108891875_108891946_108895169_108895250_108896854_108896974_108897050_108897110_108897379_108897435_108900570_108900678_108901744_108901867_108903789_108903876_108904790
54521	chrX	+	2265	12	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	9	-58	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	308.152586438806	1	114	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAGCTCTAGTATATTT	6226	False	NA	NA	False	NA	NA	NA	73348881	73355406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352687_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392_73354808_73354862
54522	chr15	-	2595	5	Antisense	novelGene_ENSMUSG00000000532.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAGCAATGTCTATGGT	NA	False	NA	NA	False	NA	NA	NA	101111563	101100954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101100975_101102332_101102457_101106958_101107090_101108615_101109838_101110465
54523	chr17	-	2094	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	6	150	6	-2	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCTTGTCAGTGAG	NA	False	NA	NA	False	NA	NA	NA	13179628	13161926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
54524	chrX	-	1575	10	ISM	ENSMUSG00000031174.18	ENSMUST00000155734.8	2672	12	36	14814	11	11219	5prime_fragment	FALSE	canonical	3	91	junction_1	9.6148034012373	8	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGATTATCATGGATA	NA	False	NA	NA	False	NA	NA	NA	10082961	10062020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
54525	chr2	+	1617	9	FSM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	49	0	-3	0	multi-exon	FALSE	canonical	3	62	junction_3	22.9945645751338	241	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	NA	False	NA	NA	NA	24852460	24862175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
54526	chr4	-	2834	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	99	26	99	-26	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	561	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTAAAAACTTTTCGGCA	NA	False	NA	NA	False	NA	NA	NA	15945408	15917265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
54527	chr3	-	2533	3	FSM	ENSMUSG00000000563.18	ENSMUST00000153666.2	2527	3	1	-7	1	7	multi-exon	FALSE	canonical	3	4727	junction_2	168.5	14	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAAACCTATGCTTCC	NA	False	NA	NA	False	NA	NA	NA	105866579	105860977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_105863358_105866177_105866215_105866463
54528	chr12	-	2959	5	NIC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	20	0	intron_retention	FALSE	canonical	3	142	junction_3	19.0656759649376	15	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	NA	False	NA	NA	NA	69629769	69624401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
54529	chr7	+	886	4	NIC	ENSMUSG00000030649.19	novel	937	5	NA	NA	29	-91	intron_retention	FALSE	canonical	3	304	junction_1	115.765087809562	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAGGATTCCGAAGATG	7778	False	NA	NA	False	NA	NA	NA	101545575	101548153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101545658_101546939_101547025_101547148_101547821_101548106
54530	chr6	-	3360	1	ISM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	111532	0	5921	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCCTGGTCTTTAAATC	NA	False	NA	NA	False	NA	NA	NA	37307549	37304189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_37304200_37307500
54531	chr4	-	1986	1	Intergenic	novelGene_2154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAGCTAAGCCAGTGTGA	NA	False	NA	NA	False	NA	NA	NA	148131497	148129511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148129500_148131500
54532	chr14	+	2708	15	NIC	ENSMUSG00000022106.15	novel	3573	16	NA	NA	3	96	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	6.89720440261332	122	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTTTGAGTCACCTAT	NA	False	NA	NA	False	NA	NA	NA	73380434	73420698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
54533	chr10	+	1791	3	FSM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	304	0	304	0	multi-exon	FALSE	canonical	3	289	junction_2	2.5	1168	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCTCACAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	61254054	61261117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61254275_61258760_61259477_61260262
54534	chr11	+	3490	20	NNC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	2770	-97	intron_retention	FALSE	non_canonical	0	0	junction_10	58.2309376986423	1	212	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCTTTATCCCAACCCT	437	False	NA	NA	False	NA	NA	NA	78195250	78213186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206481_78206740_78206868_78210292_78210405_78210817_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
54536	chr19	-	1103	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	-59	0	-59	0	multi-exon	FALSE	canonical	3	851	junction_1	12	4122	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCAGAGTGTGCTAC	NA	False	NA	NA	False	NA	NA	NA	42117557	42111711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_42112288_42113186_42113466_42117309
54538	chr19	+	1555	2	NNC	ENSMUSG00000097091.2	novel	1022	3	NA	NA	95316	-6080	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	3	13	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGCTCAGCTCTGAGCAG	NA	False	NA	NA	False	NA	NA	NA	11269496	11271170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_11269885_11270003
54539	chr2	+	2021	5	ISM	ENSMUSG00000027359.17	ENSMUST00000141482.3	1478	10	20708	-299	12076	-6	3prime_fragment	FALSE	canonical	3	66	junction_2	10.2316909648406	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAACATACGAGGCTTCG	NA	False	NA	NA	False	NA	NA	NA	126418755	126430157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
54540	chr10	+	1757	3	NNC	ENSMUSG00000036478.9	novel	5001	2	NA	NA	11	959	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	230.5	205	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCTCTTGTCATGATTA	NA	False	NA	NA	False	NA	NA	NA	96452878	96455489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_96453124_96453174_96453335_96454137
54541	chr9	-	1268	12	NNC	ENSMUSG00000062270.15	novel	1882	13	NA	NA	-8	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2844.47883358459	1	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAGAAAATAAAAGGAGTA	NA	False	NA	NA	False	NA	NA	NA	89996701	89974234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976577_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89996567
54542	chr19	-	2735	16	NNC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	534.169868945159	2	150	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	40576826	40538700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40539578_40546197_40546291_40551345_40551484_40553279_40553501_40555015_40555108_40556765_40556831_40557476_40557622_40558911_40559037_40562214_40562306_40562650_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
54543	chr19	+	2029	14	Antisense	novelGene_ENSMUSG00000024966.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGAAGCTGCCGGGACC	1850	False	NA	NA	False	NA	NA	NA	6998072	7017331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_6998544_6999025_6999173_6999389_6999499_6999639_6999674_7002675_7002807_7003658_7003757_7006026_7006117_7006269_7006373_7006475_7006599_7009846_7010017_7011525_7011647_7012009_7012156_7012858_7013067_7017253
54544	chr6	+	1585	10	Antisense	novelGene_ENSMUSG00000004980.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	75	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGCGCCGCTGCTACTGC	6920	False	NA	NA	False	NA	NA	NA	51439748	51446807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_51440207_51441060_51441194_51441409_51441528_51442157_51442225_51443124_51443202_51443281_51443385_51443474_51443688_51443884_51444031_51444164_51444278_51446650
54545	chr4	-	1852	9	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	4	-5	intron_retention	FALSE	canonical	3	28	junction_1	78.0940938867979	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTTCCTGTCTCCATG	NA	False	NA	NA	False	NA	NA	NA	147952976	147945252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
54546	chr5	-	2338	4	NNC	ENSMUSG00000042190.13	novel	2882	3	NA	NA	6053	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4.02768199119819	35	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGACGTCTTGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	113759623	113750421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113751038_113751452_113753002_113754588_113754678_113759539
54547	chr8	+	2175	4	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-13	1521	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	15.5777619273972	1	134	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATGTGACAAAGCCATT	NA	False	NA	NA	False	NA	NA	NA	129990108	130010846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_129990206_130007503_130007631_130007817_130007879_130008956
54548	chr5	+	1866	7	NNC	ENSMUSG00000029175.18	novel	3088	6	NA	NA	0	348	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	42.7473196040797	3	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTGTGCATCACCACGC	6678	False	NA	NA	False	NA	NA	NA	30805276	30815936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720_30815304_30815388
54549	chr15	-	1199	10	NIC	ENSMUSG00000022570.8	novel	1335	11	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_8	163.237689305738	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8940	False	NA	NA	False	NA	NA	NA	75801581	75796531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800740_75800899_75801501
54552	chr19	+	2519	2	FSM	ENSMUSG00000071656.8	ENSMUST00000096257.3	2583	2	-35	99	-18	0	multi-exon	FALSE	canonical	2	2	junction_1	0	20	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACATTTTCAGTTTCATG	1400	False	NA	NA	False	NA	NA	NA	8828113	8831174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8828477_8829018
54553	chr7	-	2162	12	NNC	ENSMUSG00000030741.16	novel	2219	12	NA	NA	-3	-11	intron_retention	FALSE	non_canonical	0	0	junction_2	173.961238201774	1	107	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAATCAGACTCCTGACT	NA	False	NA	NA	False	NA	NA	NA	125976586	125969249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125969586_125969906_125970079_125970354_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973248_125974238_125974376_125975845_125975912_125976008
54554	chr11	+	4077	7	NNC	ENSMUSG00000061469.4	novel	1462	6	NA	NA	98	2779	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.84042232422605	16	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATCGAAGTTTCGCTT	NA	False	NA	NA	False	NA	NA	NA	51111397	51128659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_51111474_51122621_51122914_51123233_51123435_51124291_51124380_51124877_51125184_51125478_51126523_51126589
54555	chr17	+	1261	10	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-22	3	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_6	46.65343727826	172	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTCCCCTCCCATTTC	NA	False	NA	NA	False	NA	NA	NA	95057505	95082563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071311_95074284_95074376_95078561_95078667_95079284_95079389_95082319
54556	chr4	+	1197	7	Antisense	novelGene_ENSMUSG00000057236.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGCTAAAATGTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	129203307	129228433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129203604_129215627_129215774_129215871_129216040_129216145_129216260_129216484_129216669_129222381_129222526_129228288
54557	chr6	-	1872	9	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-28	6995	-28	-6995	5prime_fragment	FALSE	canonical	3	87	junction_7	19.6273883896967	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTAAGACACTGGCTGCA	434	False	NA	NA	False	NA	NA	NA	91492805	91476249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
54558	chrX	-	748	6	FSM	ENSMUSG00000002010.18	ENSMUST00000129070.8	859	6	188	-77	-13	-3	multi-exon	FALSE	canonical	3	1318	junction_3	53.5701409369063	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGCCCTGTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	72824315	72822571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179
54559	chr11	+	2880	17	NIC	ENSMUSG00000059474.14	novel	3785	18	NA	NA	-1	-753	combination_of_known_junctions	FALSE	canonical	3	43	junction_2	31.7736132663567	1	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTTAAACTGGAATGGT	NA	False	NA	NA	False	NA	NA	NA	93777031	93835394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_93777243_93777847_93777900_93795984_93796185_93799629_93799764_93801108_93801233_93803201_93803285_93812192_93812311_93813971_93814107_93814616_93814706_93815250_93815486_93816492_93816549_93817047_93817153_93820439_93820588_93822638_93822722_93823045_93823281_93824706_93824785_93834600
54560	chr5	+	1821	1	Genic_Genomic	ENSMUSG00000005672.13	novel	NA	NA	NA	NA	5713	4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	77	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	75815565	75817386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_75815600_75817400
54561	chr13	-	2082	1	Antisense	novelGene_ENSMUSG00000074867.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTAACAGAGAGCAGGGGA	NA	False	NA	NA	False	NA	NA	NA	62279827	62277745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62277700_62279800
54562	chr13	+	1618	13	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4984	17130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	76	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATCCGTGCCCGGGTC	NA	False	NA	NA	False	NA	NA	NA	97312940	97334833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97313092_97313303_97313409_97313562_97313654_97314386_97314565_97315854_97315924_97317588_97317678_97318339_97318519_97320184_97320315_97322074_97322181_97325472_97325581_97325815_97325863_97327719_97327789_97334537
54564	chr15	-	1338	7	NNC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	2	-13	intron_retention	FALSE	canonical	0	0	junction_2	1153.75936254778	8	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGAGACTCTGCACTC	NA	False	NA	NA	False	NA	NA	NA	75781153	75767353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75767441_75767580_75768371_75768484_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
54565	chr19	-	2238	11	NNC	ENSMUSG00000024826.16	novel	3314	11	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	227.224206456971	1	126	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTCTTCTGCTGGACAG	1357	False	NA	NA	False	NA	NA	NA	5962814	5947419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955479_5956564_5956660_5957028_5957190_5962768
54566	chr1	-	1647	7	NNC	ENSMUSG00000097564.3	novel	1001	4	NA	NA	-27221	-3147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	132	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCTTCCAGGAGCCGTA	NA	False	NA	NA	False	NA	NA	NA	82730111	82702638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_82702805_82704947_82705058_82706936_82707156_82708831_82709002_82713137_82713229_82728240_82728322_82729301
54567	chr11	+	2605	15	Antisense	novelGene_ENSMUSG00000017405.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	5	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTCTGGAATCCCGGTGC	NA	False	NA	NA	False	NA	NA	NA	78056931	78067447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_78057604_78057975_78058135_78058288_78058450_78058551_78058710_78058914_78059066_78059794_78059916_78060197_78060275_78061203_78061354_78061437_78061618_78061695_78061778_78062064_78062127_78062937_78063065_78063272_78063512_78063752_78063956_78067384
54568	chr5	+	1173	10	NNC	ENSMUSG00000028932.9	novel	1775	13	NA	NA	1468	-345	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	752.762238462	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCCCGCCTGTGTCCA	NA	False	NA	NA	False	NA	NA	NA	21991748	22008430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004560_22004933_22005007_22005541_22005638_22006205_22006447_22008067_22008271_22008363
54569	chr12	+	3393	1	Intergenic	novelGene_4310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAATAAACCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	20254397	20257790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_20254400_20257800
54570	chr11	+	2600	4	FSM	ENSMUSG00000020364.15	ENSMUST00000020628.6	1719	4	-315	-566	-8	-111	multi-exon	FALSE	canonical	2	7	junction_2	0.942809041582063	18	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTACCTCTTAAGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	50950633	50962078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_50950982_50951686_50951814_50952229_50952326_50960049
54571	chr16	-	1776	12	NIC	ENSMUSG00000022948.17	novel	2408	12	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	40.1213036710482	121	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATGAAATCATTTGCAGA	NA	False	NA	NA	False	NA	NA	NA	93400677	93380356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400085_93400453
54572	chr16	+	1306	12	NNC	ENSMUSG00000005262.14	novel	934	11	NA	NA	43	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	204.202257537646	1	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCGCCTCTAGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	18631148	18653999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641977_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646664_18653723
54573	SIRV6	+	1793	2	NNC	SIRV6A	novel	783	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	NA	NA	NA	8993	10968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_10325_10506
54574	chr13	-	2445	1	Intergenic	novelGene_1468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGCAGCCAGAAGTGGGA	NA	False	NA	NA	False	NA	NA	NA	73628645	73626200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_73626200_73628600
54576	chrX	+	1613	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	108	22	46	-22	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	1099	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTATTACAACGGCCTA	NA	False	NA	NA	False	NA	NA	NA	70599641	70604260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
54578	chr15	-	760	6	NNC	ENSMUSG00000055762.17	novel	1624	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1309.01009927349	34	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	75781143	75767336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75773016_75773105_75781093
54579	chr4	+	3131	12	NNC	ENSMUSG00000042608.16	novel	3860	13	NA	NA	19	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	104.66830726373	3	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCATGGTCTGTAGCCT	NA	False	NA	NA	False	NA	NA	NA	125997846	126034815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125997940_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602_126034370_126034641
54581	chr8	+	989	1	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	1841	784	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTTGCAGAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	111771551	111772540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111771600_111772500
54582	chr11	+	2915	1	Antisense	novelGene_ENSMUSG00000025574.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCAGGAGGATTTCTGAG	NA	False	NA	NA	False	NA	NA	NA	117711790	117714705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_117711800_117714700
54584	chr9	-	1225	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	944.135186294844	15	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTAAAAAAAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	21671580	21666744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21667592_21668412_21668490_21668585_21668615_21669019_21669126_21671414
54586	chr11	+	2215	15	FSM	ENSMUSG00000019312.11	ENSMUST00000019456.5	2397	15	180	2	-34	-2	multi-exon	FALSE	canonical	3	41	junction_1	7.18736135624932	193	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGAGTCCTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	98337839	98346197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98338076_98341591_98341749_98341853_98342005_98342131_98342289_98342420_98342543_98342667_98342746_98342944_98343095_98344006_98344118_98344320_98344420_98344618_98344700_98344797_98344915_98345046_98345108_98345223_98345312_98345408_98345503_98345684
54587	chr7	-	1045	7	NIC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_6	328.635774410246	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9353	False	NA	NA	False	NA	NA	NA	126460851	126451604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460797
54588	chr17	+	1141	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	49	0	49	0	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	3156	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCACGGTGTC	NA	False	NA	NA	False	NA	NA	NA	46807685	46810550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
54589	chr9	-	1203	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239203.2	1519	4	69	247	0	0	multi-exon	FALSE	canonical	3	405	junction_1	345.790238278771	1121	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	88404941	88403104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403770_88403970_88404029_88404359_88404435_88404536
54590	chr17	-	2381	7	NNC	ENSMUSG00000024096.18	novel	443	3	NA	NA	-340	-6722	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	261.078798237024	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTTAGTTGCTTAGTGCT	NA	False	NA	NA	False	NA	NA	NA	66192289	66163546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_66164417_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
54591	chr14	-	2364	2	NNC	ENSMUSG00000097589.10	novel	637	5	NA	NA	840	126	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	90	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGAGAAAATTTAAATCG	NA	False	NA	NA	False	NA	NA	NA	61868501	61865928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_61867679_61867887
54592	chr15	+	1698	8	FSM	ENSMUSG00000022553.17	ENSMUST00000023212.15	1686	8	-12	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	86.5157765487702	389	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	76235493	76238573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
54593	chr6	+	2450	1	Intergenic	novelGene_4176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCCAAAAAGATCTAACTCT	NA	False	NA	NA	False	NA	NA	NA	56811881	56814331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_56811900_56814300
54594	chr6	-	1422	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	10	-115	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3226.63419547444	1	67	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATTACAAAAATGCTGA	NA	False	NA	NA	False	NA	NA	NA	51446854	51438239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438962_51439036_51440390_51440474_51441068_51441192_51441407_51441468_51442167_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444028_51444160_51444276_51446650
54596	chr14	-	1359	1	Intergenic	novelGene_637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCACACACCTGTGATCCC	NA	False	NA	NA	False	NA	NA	NA	101913063	101911704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_101911700_101913100
54597	chr14	-	1295	6	ISM	ENSMUSG00000033644.6	ENSMUST00000226229.2	962	7	-8	9063	-8	6312	5prime_fragment	FALSE	canonical	3	61	junction_4	6.99714227381436	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGAATCCTGGGCCTTC	NA	False	NA	NA	False	NA	NA	NA	70666840	70657645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70658200_70658897_70659105_70660076_70660216_70660343_70660432_70663955_70664193_70666770
54599	chr17	-	1480	8	NNC	ENSMUSG00000002076.13	novel	3115	9	NA	NA	-5	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	429.554063975131	1	53	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGGGTTTAGGAAGTGG	NA	False	NA	NA	False	NA	NA	NA	32253487	32165056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232381_32241756_32241844_32252234_32252386_32253418
54600	chr7	-	1308	8	FSM	ENSMUSG00000030697.8	ENSMUST00000205935.2	881	8	-4	-423	-1	0	multi-exon	FALSE	canonical	1	1	junction_6	908.071807823184	4	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5069	False	NA	NA	False	NA	NA	NA	126391669	126385037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126391232_126391396_126391594
54601	chr7	-	2600	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	-22	3	-22	-3	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	312	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAACACCTTGGCTAGA	NA	False	NA	NA	False	NA	NA	NA	112968568	112914835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
54602	chr4	-	1329	3	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	2394	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATACAATTCGGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	127220560	127219036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219871_127220001_127220431_127220494
54604	chr11	-	1563	4	NNC	ENSMUSG00000004748.6	novel	1411	4	NA	NA	113	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	77.7817459305202	11	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCATCTCCTTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	4045027	4041485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4042300_4043800_4044034_4044388_4044517_4044639
54605	chr17	-	1408	7	Fusion	ENSMUSG00000073402.12_ENSMUSG00000073403.12	novel	1182	7	NA	NA	-59	-33	multi-exon	FALSE	non_canonical	0	0	junction_1	0.471404520791032	100	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTATATTTATATAATAAATA	NA	False	NA	NA	False	NA	NA	NA	36479488	36452682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_36452926_36475868_36475921_36476226_36476365_36476490_36476767_36478324_36478601_36478817_36479088_36479335
54607	chr5	+	3403	8	NNC	ENSMUSG00000064247.15	novel	1346	8	NA	NA	-117	-4	intron_retention	TRUE	canonical	0	0	junction_4	0.880630571852711	14	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGAAATTTGTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	110248170	110253810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110248367_110248881_110248972_110249253_110249391_110249665_110249795_110250041_110250198_110250311_110250496_110251260_110252587_110252625
54608	chr4	+	2068	11	FSM	ENSMUSG00000028653.17	ENSMUST00000102649.4	2074	11	-8	14	-8	-14	multi-exon	FALSE	canonical	3	89	junction_3	10.336343647538	361	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAGTTTCTATACAGCAT	NA	False	NA	NA	False	NA	NA	NA	122910381	122948728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122945858_122945969_122946276_122946395_122947915
54609	chr4	-	1123	4	FSM	ENSMUSG00000039759.11	ENSMUST00000036680.8	1124	4	0	1	0	-1	multi-exon	FALSE	canonical	3	153	junction_2	10.8730042868667	554	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGGCTGTCACTCGGT	NA	False	NA	NA	False	NA	NA	NA	152073454	152067096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_152067810_152068091_152068194_152070125_152070319_152073339
54610	chr14	+	2707	14	NNC	ENSMUSG00000021866.16	novel	2733	14	NA	NA	47	-4	intron_retention	FALSE	non_canonical	0	0	junction_10	175.000152155471	1	151	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTCTGGTGCCAGCAT	49	False	NA	NA	False	NA	NA	NA	25842653	25887224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25842720_25843130_25843209_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25875209_25877084_25877176_25877532_25877613_25877774_25877873_25883339_25883436_25884350_25884410_25884565_25884689_25886434
54611	chr1	+	2943	7	FSM	ENSMUSG00000009772.16	ENSMUST00000082125.6	3107	7	-31	195	-31	0	multi-exon	FALSE	canonical	3	25	junction_6	6.54896090146283	25	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTCTTGTTCACTTTGG	NA	False	NA	NA	False	NA	NA	NA	132243832	132261031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_132244211_132252690_132252812_132255434_132255587_132255868_132255935_132257695_132257816_132258296_132258430_132259058
54612	chr3	-	917	7	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	691.075831986299	31	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAAGGTCTTAGTCTTGGT	7217	False	NA	NA	False	NA	NA	NA	89905977	89902764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905227_89905311_89905834
54613	chr2	+	1372	4	Antisense	novelGene_ENSMUSG00000027341.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGGAGCGCGCGCCCGC	NA	False	NA	NA	False	NA	NA	NA	132081524	132089600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_132082550_132085940_132086056_132087871_132087993_132089489
54614	chr1	+	2172	12	NNC	ENSMUSG00000026027.14	novel	2960	12	NA	NA	119	-48	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	23.5221014409501	4	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTCATGCACCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	59012799	59034233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031837_59031915_59032051_59032297_59032719_59032763_59033451
54615	chr13	-	1847	11	NNC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	48	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	90.5256317293616	1	57	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGCCTTAAGAATTCAT	NA	False	NA	NA	False	NA	NA	NA	35178057	35161735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_35162050_35162628_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35173402_35173682_35174163_35174382_35174700_35174800_35177050_35177214_35177812
54616	chr4	-	1632	11	NNC	ENSMUSG00000025330.7	novel	2316	16	NA	NA	33	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	35.4197684916206	8	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCTTTAGTTTACCACG	NA	False	NA	NA	False	NA	NA	NA	140501514	140473178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477787_140485380_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
54617	chr19	+	1534	4	NIC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	-55	-1308	intron_retention	FALSE	canonical	3	716	junction_1	56.8741300299764	5	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTAAACCCCTGGTGGG	1737	False	NA	NA	False	NA	NA	NA	5416713	5420246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5417239_5418085_5418754_5418922_5418971_5419953
54619	chr12	-	1077	5	NNC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-47	10099	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.119915773218	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGAGCCAGGGATCAGAT	NA	False	NA	NA	False	NA	NA	NA	77009022	76973943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76973966_76984965_76985530_76986740_76986865_76999942_77000051_77008763
54621	chr18	+	1267	10	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	-1349	-236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2657.30497466795	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTATTCTGGTAAAATC	NA	False	NA	NA	False	NA	NA	NA	77865305	77870119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77865389_77866189_77866336_77866449_77866599_77866790_77866928_77867556_77867679_77867778_77868011_77868700_77868793_77868911_77869057_77869498_77869541_77870000
54622	chr7	-	2087	10	NNC	ENSMUSG00000039194.17	novel	2142	9	NA	NA	-745	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	6.76592771006148	81	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCATGATGAACTTAGG	NA	False	NA	NA	False	NA	NA	NA	79037541	79024614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79025467_79025644_79025756_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033711_79034406_79034528_79036436_79036645_79037447
54623	chr8	+	920	3	ISM	ENSMUSG00000031960.15	ENSMUST00000154546.8	2221	8	6251	3064	-1596	-749	internal_fragment	FALSE	canonical	3	3030	junction_1	62	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCCTAAAAAACCAAGACAA	NA	False	NA	NA	False	NA	NA	NA	111766761	111768692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111766953_111767228_111767375_111768109
54624	chr14	-	927	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	33	-566	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	962.22075196402	2	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1721	False	NA	NA	False	NA	NA	NA	19873859	19861984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866302_19867124_19867216_19869974_19870075_19872633_19872759_19873736
54625	chr6	-	337	1	ISM	ENSMUSG00000107876.2	ENSMUST00000203987.2	490	2	326	31	326	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATATTAAACTTGTC	1640	False	NA	NA	False	NA	NA	NA	86470565	86470228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_86470200_86470600
54626	chr3	-	3731	1	FSM	ENSMUSG00000042579.3	ENSMUST00000195940.2	4671	1	-659	1599	-210	-1599	mono-exon	FALSE	NA	NA	NA	NA	NA	38	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCGCTAACCTCCCCAC	2428	False	NA	NA	False	NA	NA	NA	89680757	89677026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89677000_89680800
54627	chr15	+	824	2	Antisense	novelGene_ENSMUSG00000072235.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATATTGTTGAAATTTA	NA	False	NA	NA	False	NA	NA	NA	98848807	98849672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98848975_98849015
54628	chr3	+	1196	10	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	3	-12	intron_retention	FALSE	canonical	3	509	junction_1	101.090718334243	2055	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTCACGGGGAGAAAGTG	NA	False	NA	NA	False	NA	NA	NA	145281962	145309856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_145282049_145282605_145282752_145283856_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
54629	chr11	-	1294	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	13	25	13	-25	multi-exon	FALSE	canonical	3	946	junction_1	0	1281	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTGTGTTAGACTTGTA	NA	False	NA	NA	False	NA	NA	NA	73067850	73066369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_73067578_73067764
54631	chr5	-	1759	12	Antisense	novelGene_ENSMUSG00000041939.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	401	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGTGTGTCTTCCTGAG	2389	False	NA	NA	False	NA	NA	NA	114598652	114582341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_114582421_114582708_114582748_114583445_114583539_114584217_114584366_114588299_114588481_114588764_114588920_114590422_114590529_114590939_114590985_114593455_114593547_114593948_114594068_114596955_114597106_114598099
54632	chr7	+	3920	3	FSM	ENSMUSG00000055407.15	ENSMUST00000127492.2	4920	3	879	121	22	-121	multi-exon	FALSE	canonical	3	32	junction_2	24	24	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCATGTATAGCCAAT	NA	False	NA	NA	False	NA	NA	NA	98917574	98969438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_98918521_98964895_98965110_98966678
54633	chr14	-	2843	11	NNC	ENSMUSG00000040472.16	novel	2153	15	NA	NA	273	-19	intron_retention	FALSE	non_canonical	0	0	junction_1	159.775467453549	1	149	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGGAGAGGCCCCTCTA	NA	False	NA	NA	False	NA	NA	NA	55959360	55953800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55953863_55953937_55953996_55954624_55954713_55954960_55955075_55955902_55956209_55956320_55956989_55957080_55957164_55957252_55958421_55958592_55958718_55959051_55959163_55959300
54634	chr11	-	2442	10	NNC	ENSMUSG00000039096.11	novel	4143	9	NA	NA	28	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.7143352554372	12	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACAGACCTGCGTAGCT	3279	False	NA	NA	False	NA	NA	NA	94439997	94430630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94431255_94432920_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296_94439431_94439808
54635	chr16	-	1194	7	NNC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	94.3705756873166	382	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	16943066	16931261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942878
54636	chr7	+	1096	3	NNC	ENSMUSG00000038646.14	novel	1452	3	NA	NA	-46	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	220.5	2	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTAGGCAACTTTACCT	NA	False	NA	NA	False	NA	NA	NA	81412751	81419222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81412805_81417274_81417386_81418290
54638	chr9	+	1823	8	NNC	ENSMUSG00000010057.9	novel	1736	9	NA	NA	2	2	intron_retention	FALSE	non_canonical	0	0	junction_4	56.502483239632	4	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGGAATATTGAGTACT	NA	False	NA	NA	False	NA	NA	NA	107419445	107422896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107419653_107420180_107420273_107420371_107420536_107420705_107420815_107421377_107421487_107421578_107422040_107422112_107422587_107422689
54639	chr1	-	1161	8	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	65675	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_7	117.150522397295	14	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	NA	False	NA	NA	NA	33595548	33492890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33595488
54642	chr12	+	1767	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	2	281	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	94.0275890364099	201	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAGACTGTCGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	69771725	69791715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_69771789_69772228_69772329_69787672_69787882_69788418_69788591_69790492
54643	chr15	-	2092	7	FSM	ENSMUSG00000022559.9	ENSMUST00000229813.2	2091	7	-16	15	-16	-15	multi-exon	FALSE	canonical	3	158	junction_6	11.5325625946708	247	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGTTTTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	76422962	76419944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922
54645	chr16	+	701	6	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-81	-50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1905.54817309875	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTGCCATCACTAAAT	NA	False	NA	NA	False	NA	NA	NA	84571192	84619868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571291_84609851_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
54648	chr17	-	1998	11	NNC	ENSMUSG00000024037.14	novel	4154	11	NA	NA	871	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	185.501590289679	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTTTCTGGAATGTTCA	NA	False	NA	NA	False	NA	NA	NA	31738017	31715099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722666_31728760_31728887_31729551_31729621_31737791
54649	chr4	-	2173	12	ISM	ENSMUSG00000008305.19	ENSMUST00000132550.8	3773	18	53697	-5	-4082	0	3prime_fragment	TRUE	canonical	3	132	junction_8	14.618566254556	61	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTTCCTCCTTGACTC	NA	False	NA	NA	False	NA	NA	NA	72063632	72036041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_72036629_72036727_72036805_72038376_72038528_72040580_72040729_72043008_72043257_72044424_72044675_72055318_72055396_72056728_72056926_72057925_72058071_72059397_72059551_72060063_72060118_72063546
54654	chr11	+	1649	5	ISM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	137	3	-20	-3	intron_retention	FALSE	canonical	3	149	junction_4	2.29128784747792	259	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTCTTTTCTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	102080631	102084904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910
54655	chr14	+	1418	7	Antisense	novelGene_ENSMUSG00000068245.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAGTGCGGAATTGGGACA	NA	False	NA	NA	False	NA	NA	NA	59586180	59607998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_59586838_59588595_59588667_59590096_59590314_59593753_59593902_59596925_59597033_59599182_59599303_59607900
54656	chr17	-	1750	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	308	1809	multi-exon	FALSE	canonical	3	12	junction_1	83.875271829603	4	40	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAACTGTAATAAACTTC	NA	False	NA	NA	False	NA	NA	NA	37299629	37278277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37278611_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546_37298823_37299396
54657	chr7	-	3085	9	NNC	ENSMUSG00000030619.11	novel	1111	7	NA	NA	19	2138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1043.58384156473	1	166	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACCGCAGAGTTTATAAA	NA	False	NA	NA	False	NA	NA	NA	89629744	89611663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_89612511_89612557_89614071_89616920_89617013_89618778_89618861_89619513_89619640_89620759_89620814_89621438_89621532_89626104_89626258_89629619
54658	chr17	-	1620	6	ISM	ENSMUSG00000015605.7	ENSMUST00000015749.7	2616	7	2497	0	-1885	0	3prime_fragment	FALSE	canonical	3	76	junction_2	5.97996655509042	33	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTTTTTTTAATGGC	NA	False	NA	NA	False	NA	NA	NA	46864604	46859254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_46860105_46860361_46860439_46860770_46860963_46861826_46861947_46862456_46862719_46864485
54659	chr8	+	1002	5	Antisense	novelGene_ENSMUSG00000003848.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACGGTCAATGTTAGGCA	NA	False	NA	NA	False	NA	NA	NA	108139242	108144960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_108139816_108142737_108142882_108143624_108143724_108144687_108144862_108144948
54661	chr11	+	4167	6	FSM	ENSMUSG00000061469.4	ENSMUST00000126189.3	1462	6	76	-2781	76	2781	multi-exon	FALSE	canonical	3	10	junction_2	4.24264068711928	21	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATCGAAGTTTCGCTTCA	NA	False	NA	NA	False	NA	NA	NA	51111375	51128661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51111470_51122618_51122914_51123233_51123435_51124291_51124380_51124877_51125184_51125478
54662	chr4	+	702	1	Intergenic	novelGene_1842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTGAGAAGAAGGTAAATG	NA	False	NA	NA	False	NA	NA	NA	49601948	49602650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_49601900_49602600
54663	chr6	-	1219	9	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-105	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	222.733830782394	1	63	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	NA	False	NA	NA	False	NA	NA	NA	125148874	125144969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148015_125148677_125148723_125148795
54664	chr2	-	1361	2	NIC	ENSMUSG00000076437.12	novel	654	4	NA	NA	3	0	intron_retention	FALSE	canonical	3	2438	junction_1	0	71	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	393	False	NA	NA	False	NA	NA	NA	84501017	84499564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84500735_84500826
54665	chr5	-	1718	9	NNC	ENSMUSG00000029422.16	novel	1595	10	NA	NA	135	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	169.188827571445	1	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCAAAACTGGTGTTAAT	8640	False	NA	-34	True	NA	NA	NA	123883158	123866791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874732_123877554_123877759_123878734_123878926_123881700_123881742_123883017
54668	chr11	+	1643	12	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	-4	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1265.49356653527	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	107370349	107388965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382682_107382842_107382978_107384228_107384346_107385455_107385631_107386513_107386592_107388349_107388769_107388884
54669	chr11	-	796	6	NIC	ENSMUSG00000020415.17	novel	700	6	NA	NA	4	2	combination_of_known_junctions	FALSE	canonical	3	326	junction_1	3916.77030217499	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCCCTGATTGGTATTT	NA	False	NA	NA	False	NA	NA	NA	43317025	43311074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_43311236_43311854_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317000
54671	chr2	+	2728	13	NNC	ENSMUSG00000033411.17	novel	5053	13	NA	NA	2	-604	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	113.770968763272	1	136	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATAAGTCGTCACGCCT	NA	False	NA	NA	False	NA	NA	NA	121786942	121842265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121787099_121799550_121799761_121807817_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
54672	chr11	+	1016	5	NNC	ENSMUSG00000017716.16	novel	947	4	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	981.383334890093	1964	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGACTGTAAGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	117740084	117746553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117740288_117740579_117740690_117743488_117743607_117744287_117744370_117746050
54673	chr6	-	605	7	ISM	ENSMUSG00000030359.15	ENSMUST00000112132.8	4681	36	38824	7	-41	-7	3prime_fragment	FALSE	canonical	3	30	junction_1	17.1464281994822	229	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATCTGTGGGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128464859	128460536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464843
54675	chr14	-	1543	11	NNC	ENSMUSG00000021814.18	novel	2851	13	NA	NA	2	346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	441.621557444833	2	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAACAATCTCTAATTCTG	8172	False	NA	NA	False	NA	NA	NA	20530007	20506250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512787_20512974_20513089_20514676_20514772_20519462_20519558_20521435_20521641_20523342_20523389_20529962
54676	chr9	+	770	7	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8485.24649841647	30	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGGTGACAAACCCTTG	NA	False	NA	NA	False	NA	NA	NA	64080657	64085787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083007_64083373_64083499_64084222_64084309_64085706
54677	chr5	+	2480	17	Antisense	novelGene_ENSMUSG00000029119.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	88	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCCATTGCTGGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	36964401	36987911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_36964550_36965136_36965250_36966349_36966463_36967637_36967752_36970289_36970503_36970610_36970724_36971075_36971319_36971664_36971865_36973402_36973584_36974892_36975044_36978227_36978431_36979184_36979230_36981447_36981554_36983385_36983557_36985207_36985317_36986991_36987118_36987780
54678	chr9	+	2330	18	NNC	ENSMUSG00000032591.16	novel	2262	18	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	12.461150701946	78	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATAGAGTGCTTCTTAGT	6661	False	NA	NA	False	NA	NA	NA	107957632	107962199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959590_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
54679	chr17	+	2336	16	Antisense	novelGene_ENSMUSG00000024039.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	111	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCCCAGGGAAGGGTGGC	NA	False	NA	NA	False	NA	NA	NA	31831630	31856128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_31832268_31834447_31834535_31835020_31835128_31836099_31836246_31836364_31836444_31838117_31838220_31839903_31839990_31840412_31840538_31841400_31841481_31843218_31843275_31843973_31844110_31844466_31844517_31844855_31844992_31846449_31846552_31851793_31852131_31856058
54680	chr1	-	3640	7	NNC	ENSMUSG00000026098.14	novel	3054	5	NA	NA	6	101	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	76.5651501808899	9	30	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGCAAATCCTGCATCA	6061	False	NA	NA	False	NA	NA	NA	53336168	53301952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53304588_53306986_53307090_53314228_53314412_53321099_53321252_53334229_53334406_53335317_53335431_53335890
54681	chr6	+	1115	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-539	-111	539	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	37782909	37784024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
54682	chr11	+	1279	9	FSM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	13	7	-2	-7	multi-exon	FALSE	canonical	3	66	junction_2	72.2789734293453	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAAGTGCGAGACCCTG	NA	False	NA	NA	False	NA	NA	NA	95275729	95282595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95275940_95276626_95276731_95277336_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
54683	chr14	+	929	11	NNC	ENSMUSG00000021932.14	novel	1494	11	NA	NA	25	-481	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	257.1652387085	4	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTTGCCTATTCTG	NA	False	NA	NA	False	NA	NA	NA	62569541	62609960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_62569626_62584016_62584092_62585969_62586043_62587872_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
54684	chr4	+	1155	7	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	297	-134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2206.10690281923	19	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTTTTCTCATGCTTT	47	False	NA	NA	False	NA	NA	NA	46451198	46472523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46451350_46460089_46460151_46463847_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
54685	chr6	-	1583	8	NIC	ENSMUSG00000051169.15	novel	1269	9	NA	NA	-4	-13	intron_retention	FALSE	canonical	3	157	junction_7	15.0373684193609	849	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTTTACCAGAAATGAGAAA	NA	False	NA	NA	False	NA	NA	NA	113396296	113392302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113392684_113393267_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
54686	chr9	-	4510	2	ISM	ENSMUSG00000032498.10	ENSMUST00000123869.8	2394	17	40534	-3934	-118	2274	3prime_fragment	FALSE	canonical	0	0	junction_1	0	29	104	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGATTTCTGGGACCTT	2690	False	NA	NA	False	NA	NA	NA	111060134	111055021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_111059366_111059968
54687	chr7	+	1414	1	Intergenic	novelGene_2987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACCAAGCATTCAAACA	5861	False	NA	NA	False	NA	NA	NA	80589128	80590542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_80589100_80590500
54688	chr15	-	2254	4	NNC	ENSMUSG00000033228.9	novel	5766	15	NA	NA	-964	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116.70761186258	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAATAAAACAAATTCCAGG	NA	False	NA	NA	False	NA	NA	NA	96317537	96312481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96312798_96312912_96313033_96314837_96315071_96315952
54689	chr2	-	1086	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1425.9329109978	1	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9578	False	NA	NA	False	NA	NA	NA	10085247	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068259_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
54690	chr14	+	1031	4	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1082.36623499935	288	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATACACACGTGTTTCT	6575	False	NA	NA	False	NA	NA	NA	76741953	76745196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742738_76743856_76743920_76744605
54691	chr2	+	1172	6	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	657.807084181981	21	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	145745201	145758345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145745283_145753616_145753684_145754312_145754449_145755845_145755966_145757453_145757600_145757723
54692	chr15	-	1643	10	ISM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	2163	-8	-915	0	3prime_fragment	FALSE	canonical	3	379	junction_9	34.7534526218015	1	66	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8302	False	NA	NA	False	NA	NA	NA	76499421	76496582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243
54693	chr5	-	2587	10	FSM	ENSMUSG00000029510.16	ENSMUST00000161827.8	2586	10	-7	6	-7	-1	multi-exon	FALSE	canonical	3	16	junction_6	3.67507453523138	71	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTATGGCTCTCTGTG	1714	False	NA	NA	False	NA	NA	NA	138278274	138271922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275009_138275668_138275750_138276476_138276800_138277100_138277260_138277910
54695	chr12	-	2527	10	NNC	ENSMUSG00000021234.10	novel	3000	9	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.41602560309064	22	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGATGTTTGAGATATTTT	444	False	NA	NA	False	NA	NA	NA	84408568	84392087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84392587_84393015_84393184_84393560_84393710_84395050_84395151_84395379_84395545_84400573_84400702_84401483_84401822_84402697_84403252_84404301_84404625_84408465
54696	chr12	-	1734	11	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	27	-3	intron_retention	FALSE	canonical	3	80	junction_10	66.9540140693596	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	7699	False	NA	NA	False	NA	NA	NA	110807334	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
54697	chr7	+	953	5	NIC	ENSMUSG00000040952.17	novel	593	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	8873	junction_4	8248.73767236539	48	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	24584057	24589231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24588387_24589165
54700	chr9	+	2771	16	FSM	ENSMUSG00000032308.10	ENSMUST00000053230.7	2826	16	45	10	45	-10	multi-exon	FALSE	canonical	3	37	junction_2	6.816320284598	52	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATACTTATGCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	57496779	57503506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57496970_57497606_57497748_57497943_57498065_57498496_57498602_57499276_57499421_57499613_57499697_57500101_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416_57501496_57501566_57501608_57501889_57501938_57502065_57502133_57502225
54701	chr13	-	1407	8	FSM	ENSMUSG00000021519.12	ENSMUST00000173158.8	1415	8	16	-8	-10	0	multi-exon	FALSE	canonical	3	14	junction_6	120.714539306581	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	414	False	NA	NA	False	NA	NA	NA	67081115	67060181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080998
54703	chr1	+	3646	13	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	5	-12883	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	666.525125599595	3	93	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCCTTCCCACTCAACCC	NA	False	NA	NA	False	NA	NA	NA	118555680	118600015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597979_118598364
54704	chr7	+	1391	6	NNC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	702.694414379394	2011	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115692578	115704445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446_115704146_115704190
54705	chr9	+	2108	7	NNC	ENSMUSG00000036411.11	novel	1382	5	NA	NA	-9275	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	3.8151743807532	25	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTTCAGTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	22313533	22355977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22313656_22335408_22336104_22341651_22341796_22342971_22343105_22346390_22346697_22351162_22351261_22355367
54706	chr5	+	1837	3	FSM	ENSMUSG00000039754.11	ENSMUST00000125923.2	1040	3	15	-812	15	-22	multi-exon	FALSE	canonical	2	7	junction_1	27.5	191	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAACCTTGGTCTCATG	NA	False	NA	NA	False	NA	NA	NA	136165026	136170444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136165254_136168191_136168390_136169032
54707	chr12	+	1998	2	FSM	ENSMUSG00000035560.6	ENSMUST00000046331.5	2228	2	231	-1	27	1	multi-exon	FALSE	canonical	3	6	junction_1	0	25	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGACCTCTTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	65272521	65275229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_65274272_65274981
54708	chr17	+	1881	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	8	26	8	-26	multi-exon	FALSE	canonical	3	218	junction_3	26.473748790075	25	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTAAAGTGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	12338178	12438506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
54709	chr7	+	1055	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	-35	0	-35	0	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	5225	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	NA	False	NA	NA	NA	25358553	25367457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
54711	chr8	+	2969	3	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	20	-11371	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	6	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCACAAGGTCCCCATT	NA	False	NA	NA	False	NA	NA	NA	73197743	73201124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73198120_73198330_73199918_73200118
54712	chr18	+	1506	8	Antisense	novelGene_ENSMUSG00000024360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTCCACAGTAAACAAC	3364	False	NA	NA	False	NA	NA	NA	35037546	35046709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35038122_35039032_35039183_35040667_35040735_35041096_35041253_35042197_35042330_35042801_35042990_35043171_35043292_35046591
54714	chr11	-	1582	4	FSM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	-10	2	-10	-2	multi-exon	FALSE	canonical	3	250	junction_3	22.1710521977545	955	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTGTCTTTGCTTCTGT	4455	False	NA	NA	False	NA	NA	NA	102047240	102043373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102044421_102045382_102045530_102046549_102046731_102047033
54715	chr6	+	1202	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	264	53	-6	-46	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTACTGTGTAACAGAGA	2579	False	NA	NA	False	NA	NA	NA	73225628	73253841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
54716	chrX	+	1535	4	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-13	0	intron_retention	FALSE	canonical	3	147	junction_2	471.589039548442	185	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACACGGGGCTCCTGTGT	5419	False	NA	NA	False	NA	NA	NA	72830620	72834430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405
54717	chr13	-	1521	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	20	0	20	0	multi-exon	FALSE	canonical	3	84	junction_2	29.1108227296997	813	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	NA	NA	NA	91955804	91944651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
54718	chr7	+	1633	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	-3	0	-3	0	multi-exon	FALSE	canonical	3	76	junction_5	5.62609034427847	187	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTGTCTGGCAAGCA	NA	False	NA	NA	False	NA	NA	NA	15853816	15861441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
54719	chr15	-	2396	20	FSM	ENSMUSG00000062906.13	ENSMUST00000082197.12	2412	20	18	-2	-3	2	multi-exon	FALSE	canonical	3	17	junction_4	5.98567079345711	62	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTCTGTCTCCGTTACTG	NA	False	NA	NA	False	NA	NA	NA	89012885	89007507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008457_89008734_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
54720	chr2	+	1465	11	NNC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	-28	-109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	661.218035144233	1	58	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCACCGCCCACTGCTTTC	5090	False	NA	NA	False	NA	NA	NA	71219575	71271857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264542_71269060_71269157_71271511
54721	chr9	-	2272	3	NIC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1854	-11	intron_retention	FALSE	canonical	3	97	junction_2	19.5	2	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGCCACACACTGTGTC	NA	False	NA	NA	False	NA	NA	NA	20789169	20785114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_20785369_20786461_20786998_20787687
54722	chr7	-	2364	8	NNC	ENSMUSG00000070427.5	novel	1594	7	NA	NA	3204	5458	intron_retention	FALSE	non_canonical	0	0	junction_1	0	9	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGCCCAGACGTTCAGCT	NA	False	NA	NA	False	NA	NA	NA	101664158	101658633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101658728_101658832_101658980_101660037_101660285_101661085_101661315_101661946_101662085_101662374_101662551_101662734_101662852_101662942
54723	chr7	-	1897	18	NIC	ENSMUSG00000030720.17	novel	3203	18	NA	NA	-12	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_17	51.790301158785	260	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	126183762	126171257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345_126183453_126183666
54724	chr18	-	3482	1	Antisense	novelGene_ENSMUSG00000037058.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAACACCCCTGCCCGG	5345	False	NA	NA	False	NA	NA	NA	35735175	35731693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_35731700_35735200
54725	chr12	+	1828	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	25	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	245.866946854504	3	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516915	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565774_86567821
54726	chrX	-	1825	9	NNC	ENSMUSG00000031399.16	novel	1899	9	NA	NA	-35	-15	intron_retention	FALSE	canonical	0	0	junction_3	42.6731765867037	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGATGTCCTCAGTGGA	NA	False	NA	NA	False	NA	NA	NA	73436744	73428339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_73429042_73430027_73430155_73430237_73430398_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
54727	chr4	+	3458	26	ISM	ENSMUSG00000036622.16	ENSMUST00000037055.14	3956	29	6938	1	-1791	-1	3prime_fragment	FALSE	canonical	3	40	junction_16	19.3376730761485	61	30	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCGGCACTGGTCTTG	568	False	NA	NA	False	NA	NA	NA	140721121	140734640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140733989_140734160_140734251
54728	chr5	+	2669	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	0	28	0	-28	multi-exon	FALSE	canonical	3	1125	junction_2	41.7215471908701	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTACTTTTATTAAAGGTT	NA	False	NA	NA	False	NA	NA	NA	28276360	28283632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
54730	chr9	+	2603	8	FSM	ENSMUSG00000032114.10	ENSMUST00000165839.3	2086	8	-524	7	-524	-1	multi-exon	FALSE	canonical	3	14	junction_1	6.22044030202207	49	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAAACAGTCAGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	44308948	44314256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
54731	chr14	+	3115	8	NIC	ENSMUSG00000022032.15	novel	3794	9	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	15.7829667938676	28	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCTGATAAGTGGTCCA	822	False	NA	NA	False	NA	NA	NA	65903855	66002275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_65904196_65908005_65908124_65927216_65927346_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
54732	chr9	+	691	1	Genic_Genomic	ENSMUSG00000000088.8	novel	NA	NA	NA	NA	10404	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTGTGATGTTGTC	NA	False	NA	NA	False	NA	NA	NA	57439019	57439710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_57439000_57439700
54733	chr10	+	2220	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	137	-5	80	5	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	1	125	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTGGCTCAAGTGA	NA	False	NA	NA	False	NA	NA	NA	44144490	44240292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
54735	chr9	-	1443	5	FSM	ENSMUSG00000001348.16	ENSMUST00000115315.3	1349	5	-90	-4	-90	0	multi-exon	TRUE	canonical	3	21	junction_4	98.7734149455206	93	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	9989	False	NA	NA	False	NA	NA	NA	22041984	22038022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818
54736	chr8	+	4433	16	NNC	ENSMUSG00000031540.15	novel	9041	17	NA	NA	3131	-3714	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	5.51120071611744	1	224	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACCAGCAGCCACCCCCG	NA	False	NA	NA	False	NA	NA	NA	23352695	23429561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_23352818_23393123_23393233_23397661_23397778_23398258_23398341_23400147_23400284_23401675_23401993_23404284_23404404_23409340_23409457_23413530_23413673_23415296_23415459_23416392_23416487_23419231_23419464_23420180_23420395_23422130_23422731_23425499_23425815_23428004
54737	chr9	+	2060	3	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	71	5705	-10	-505	5prime_fragment	FALSE	canonical	3	6039	junction_1	11.5	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGGGTTGTGGATGGT	NA	False	NA	NA	False	NA	NA	NA	108765771	108772986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108765856_108766083_108766225_108771151
54739	chr3	+	2060	13	Antisense	novelGene_ENSMUSG00000102370.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	23	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCCTCTTCTGCTTTGCG	NA	False	NA	NA	False	NA	NA	NA	79511216	79536035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_79511475_79512213_79512433_79512935_79513119_79517104_79517275_79519218_79519361_79520926_79521070_79522306_79522452_79523224_79523307_79525611_79525731_79526143_79526227_79530043_79530274_79530846_79530944_79535846
54740	chr2	+	2007	12	FSM	ENSMUSG00000027115.15	ENSMUST00000144924.8	1965	12	-31	-11	-5	11	multi-exon	FALSE	canonical	3	315	junction_6	27.0380815007217	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGGGATGTGGCTCTTT	1459	False	NA	NA	False	NA	NA	NA	109111165	109141190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891
54741	chr11	-	2110	6	FSM	ENSMUSG00000048728.16	ENSMUST00000050595.13	2059	6	-58	7	0	-7	multi-exon	FALSE	canonical	2	3	junction_5	5.56417109729742	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATTTACAATTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	50778328	50763553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778192
54742	chr8	+	2434	16	NNC	ENSMUSG00000031985.10	novel	2984	16	NA	NA	-5	18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	218.860950275639	1	103	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGCCCCTCCCCGTTTAC	5154	False	NA	NA	False	NA	NA	NA	125589805	125616305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_125590052_125597514_125597698_125600071_125600249_125600965_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614542_125616010
54743	chr11	-	3709	13	FSM	ENSMUSG00000017314.13	ENSMUST00000017458.11	4089	13	11	369	11	140	multi-exon	FALSE	canonical	1	2	junction_2	3.83242742918897	2	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTCCTCTCTGAACAGCC	7678	False	NA	NA	False	NA	NA	NA	101979330	101948209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101950320_101951246_101951376_101951592_101951796_101952321_101952484_101952726_101952796_101952880_101952987_101953076_101953209_101954013_101954242_101955119_101955270_101955394_101955548_101971478_101971598_101976125_101976189_101979245
54744	chr2	+	1825	9	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.209902818138	1	85	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTTTTGGTGTGTTATT	84	False	NA	NA	False	NA	NA	NA	13579125	13587634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580351_13580417_13583223_13583320_13583399_13583556_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
54745	chr4	+	1232	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	15	33	7	-33	multi-exon	FALSE	canonical	3	277	junction_3	33.5326333591622	1862	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGCCTATGACTTGGGG	-16	True	NA	NA	False	NA	NA	NA	44981409	44990701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
54746	chr1	-	2625	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	56	612	-11	-612	multi-exon	FALSE	canonical	3	57	junction_1	6.25316246521123	3	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACAACTTCATGTTAGA	742	False	NA	NA	False	NA	NA	NA	53824327	53795276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
54749	chr14	-	1681	5	FSM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	-49	-296	-35	-10	multi-exon	FALSE	canonical	3	35	junction_3	9.90896059130321	206	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGCAACCGGGTCCGC	NA	False	NA	NA	False	NA	NA	NA	70879743	70873652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876387_70878971_70879009_70879162
54750	chr17	-	1613	10	NIC	ENSMUSG00000063576.13	novel	1954	11	NA	NA	1	-16	combination_of_known_splicesites	FALSE	canonical	3	20	junction_9	133.12214756696	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACCTAAAACCTCCAAAC	NA	False	NA	NA	False	NA	NA	NA	46991728	46985494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46991627
54751	chr1	-	2351	11	NNC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_9	192.19667010643	8	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	NA	False	NA	NA	NA	91326478	91303552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91316169_91318328_91318386_91318828_91318920_91326372
54753	chr11	+	1266	5	NNC	ENSMUSG00000085860.2	novel	612	4	NA	NA	-24	1024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	46.0135849505339	241	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATCAAAAATTCCATGGAA	NA	False	NA	NA	False	NA	NA	NA	97489312	97514743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97489494_97505749_97505855_97509262_97509326_97513432_97514073_97514466
54754	chr2	-	1653	10	NNC	ENSMUSG00000036352.17	novel	1852	10	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	1	7	junction_9	318.851217287048	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACTTGTGTTACTTCA	NA	False	NA	NA	False	NA	NA	NA	25911752	25888558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25889080_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408_25911620_25911668
54756	chr2	-	1607	13	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	-181	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	140.808651683371	2	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTTGGGTTTCTCTAGC	NA	False	NA	NA	False	NA	NA	NA	164698897	164681441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686703_164688637_164688837_164693432_164693518_164694500_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
54759	chr4	-	1174	2	NIC	ENSMUSG00000028367.6	novel	1051	5	NA	NA	82	-7498	intron_retention	FALSE	canonical	3	4612	junction_1	0	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCTTGAAGTGGATGTG	5	True	NA	NA	False	NA	NA	NA	57956329	57950870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_57951902_57956186
54760	chr14	-	3326	17	ISM	ENSMUSG00000034893.10	ENSMUST00000049168.9	4268	23	15032	2	2188	-2	3prime_fragment	FALSE	canonical	3	97	junction_8	9.41325528178217	66	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGATCTTTGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	75976966	75939811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_75941501_75944529_75944629_75945361_75945490_75950640_75950717_75954307_75954443_75954548_75954638_75957131_75957253_75959541_75959632_75962150_75962276_75965147_75965254_75966710_75966872_75968034_75968175_75969415_75969508_75970350_75970478_75971337_75971382_75975402_75975484_75976943
54761	chr11	+	1682	7	NNC	ENSMUSG00000020521.8	novel	4452	9	NA	NA	0	-2487	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	139.751863434207	2	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCATTCACCTGGTGGAC	NA	False	NA	NA	False	NA	NA	NA	86375510	86387364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_86375626_86376888_86377332_86377481_86377519_86379892_86379994_86381183_86381338_86382504_86382619_86386646
54762	chr6	-	1573	4	NNC	ENSMUSG00000092247.3	novel	399	4	NA	NA	-1	9181	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0.471404520791032	17	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTGAAAAAGTAGCCTCC	NA	False	NA	NA	False	NA	NA	NA	90209771	90199528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_90200748_90201237_90201354_90202364_90202500_90209668
54764	chr6	+	3494	5	FSM	ENSMUSG00000032652.14	ENSMUST00000046303.12	3629	5	123	12	22	-12	multi-exon	FALSE	canonical	3	17	junction_3	2.06155281280883	36	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACCAAAATAACGTTCAGT	NA	False	NA	NA	False	NA	NA	NA	134807239	134835882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134807408_134826065_134826264_134828042_134828188_134829240_134829278_134832936
54765	chr17	-	1910	6	NNC	ENSMUSG00000024114.16	novel	1799	5	NA	NA	-25	-58	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	7.74596669241483	35	8	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGGTCTGGCTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	24063171	24060083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24061500_24062173_24062318_24062415_24062585_24062812_24062846_24062930_24062958_24063050
54767	chr14	-	3596	25	NNC	ENSMUSG00000033487.15	novel	6143	26	NA	NA	25788	-652	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	40.1579347355192	1	149	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGTAATCAAGTGAAAATA	NA	False	NA	NA	False	NA	NA	NA	72921194	72777621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794421_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073
54768	chr9	-	1767	10	FSM	ENSMUSG00000032415.15	ENSMUST00000034986.14	1790	10	18	5	18	-5	multi-exon	TRUE	canonical	3	19	junction_5	4.12160822022031	113	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCATGTGTTCTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	86346985	86189363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_86189930_86254393_86254533_86304893_86305058_86307314_86307424_86309420_86309491_86317336_86317407_86322638_86322808_86330815_86330907_86333866_86334064_86346793
54769	chrX	+	1544	13	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	26	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	214.445732581048	2	65	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	56454539	56534133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478571_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56533944
54770	chr2	-	2213	1	Antisense	novelGene_ENSMUSG00000026991.21_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGGCTAGGCTCGCACT	NA	False	NA	NA	False	NA	NA	NA	59141996	59139783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_59139800_59142000
54773	chr2	+	1745	8	NNC	ENSMUSG00000002104.12	novel	1606	8	NA	NA	-50	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	18.9273584517012	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGAAAAATAAAATGTTTG	NA	False	NA	NA	False	NA	NA	NA	90865914	90876047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875695
54775	chr2	-	1429	6	NIC	ENSMUSG00000027566.16	novel	914	7	NA	NA	-4	-3	intron_retention	FALSE	canonical	3	3926	junction_1	620.128051292634	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTCTGTGATGAGAACCT	NA	False	NA	NA	False	NA	NA	NA	179684207	179678169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179680643_179681145_179681273_179684070
54776	chr5	-	2478	4	FSM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	44	0	32	0	multi-exon	FALSE	canonical	3	122	junction_3	15.8394724940223	60	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGTGTTTCTCTCAT	2280	False	NA	NA	False	NA	NA	NA	124170289	124142703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_124144802_124145671_124145755_124148750_124148923_124170164
54777	chr4	+	2739	14	FSM	ENSMUSG00000011257.20	ENSMUST00000106243.8	3111	14	266	106	-4	-3	multi-exon	FALSE	canonical	3	64	junction_10	102.125111806737	20	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGGCTGAATTTGATG	NA	False	NA	NA	False	NA	NA	NA	123176883	123192612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189722_123189851_123191471_123191566_123191653_123191887_123192305
54778	chr16	-	2078	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	33	184	0	-184	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	1129	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAAATTTAACATTTAT	NA	False	NA	NA	False	NA	NA	NA	55850069	55836052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
54779	chr5	+	1460	7	NNC	ENSMUSG00000025532.14	novel	1492	6	NA	NA	0	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	133.949824768663	22	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCATACCTGGTATGTTT	NA	False	NA	NA	False	NA	NA	NA	130058130	130089637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545_130089320_130089358
54780	chr14	-	3855	31	FSM	ENSMUSG00000059456.14	ENSMUST00000022622.14	4034	31	126	53	56	-43	multi-exon	FALSE	canonical	2	2	junction_25	4.30103346753881	34	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTTTGATCGGTGGTT	NA	False	NA	NA	False	NA	NA	NA	66518375	66390758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072_66413191_66414511_66414614_66415140_66415216_66415484_66415626_66416040_66416096_66416279_66416343_66424891_66424972_66427022_66427111_66427504_66427684_66450760_66451002_66518331
54782	chr10	+	1326	7	ISM	ENSMUSG00000019767.13	ENSMUST00000138112.8	3350	11	35	20351	35	179	5prime_fragment	FALSE	canonical	2	2	junction_5	4.14996653266291	35	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAATAATGGGATGGCGA	3242	False	NA	NA	False	NA	NA	NA	4432536	4491880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_4432629_4462751_4462881_4464055_4464313_4468905_4469051_4470754_4470941_4483958_4484277_4491681
54783	chr4	+	2147	10	NIC	ENSMUSG00000012126.17	novel	1573	15	NA	NA	-12	-40	intron_retention	FALSE	canonical	3	45	junction_2	22.6230517202212	22	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCCCAGGCTCACTGCCC	NA	False	NA	NA	False	NA	NA	NA	133839825	133854045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
54784	chr8	-	2853	3	Antisense	novelGene_ENSMUSG00002075592.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	66	junction_2	70.5	244	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAACCCAAAACCACAA	9560	False	NA	NA	False	NA	NA	NA	111248578	111219760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_111222416_111227500_111227611_111248490
54785	chr6	-	1503	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	-1	7	-1	-7	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	1	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACTGAGGCATTTCCTCT	3460	False	NA	NA	False	NA	NA	NA	125263006	125255243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
54786	chr10	+	1899	13	NNC	ENSMUSG00000020111.16	novel	2294	13	NA	NA	-17	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	56.6090393252997	123	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGGAAATACCCGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	59538403	59699937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000_59699405_59699825
54787	chr4	+	2089	11	Antisense	novelGene_ENSMUSG00000034645.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	62	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGCCCGGCCGCCGACGT	NA	False	NA	NA	False	NA	NA	NA	108044309	108075137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_108044632_108046643_108046691_108046767_108046927_108049105_108049161_108049248_108049347_108051177_108051253_108053350_108053518_108058389_108058528_108061788_108062546_108067254_108067418_108075029
54789	chr11	+	1382	10	FSM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	-162	0	-20	0	multi-exon	FALSE	canonical	3	266	junction_9	31.9443961352292	474	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTGAGTGCTGTTTA	4071	False	NA	NA	False	NA	NA	NA	69804855	69807417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
54790	chr7	+	1220	1	Genic_Genomic	ENSMUSG00000061286.8	novel	NA	NA	NA	NA	6117	355	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAGGTGACAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	25369928	25371148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_25369900_25371100
54792	chr11	+	998	5	NNC	ENSMUSG00000039640.8	novel	1316	5	NA	NA	46	294	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	478.634189648002	98	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGTGTGTCCTGAACC	9001	False	NA	NA	False	NA	NA	NA	120375484	120379577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120375595_120376068_120376256_120376439_120376569_120378922_120379061_120379143
54794	chr12	+	1354	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9695	-206	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	35.1105397281215	3	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATTGACTATCTCTGTG	659	False	NA	NA	False	NA	NA	NA	104343727	104360309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_104343932_104355564_104355972_104357714_104357989_104358900_104359052_104359991
54795	chr17	+	1477	3	FSM	ENSMUSG00000023861.18	ENSMUST00000137344.2	670	3	-301	-506	-301	-1	multi-exon	FALSE	canonical	3	944	junction_1	57.5	15	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTATTTGAGTGTGACTA	8294	False	NA	NA	False	NA	NA	NA	8514638	8516488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_8515464_8515655_8515789_8515969
54796	chr6	-	2955	17	FSM	ENSMUSG00000038167.7	ENSMUST00000042647.7	3299	17	320	24	320	-24	multi-exon	FALSE	canonical	0	0	junction_7	3.59198326137525	22	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAGCCCTATATAAAAGT	NA	False	NA	NA	False	NA	NA	NA	125357436	125339646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125339831_125340004_125340683_125341546_125341699_125347343_125347460_125347544_125347678_125349020_125349141_125349440_125349579_125349775_125349926_125350069_125350181_125351491_125351642_125351936_125351988_125352205_125352302_125352686_125352852_125354344_125354501_125355664_125355874_125356717_125356940_125357312
54797	chr11	+	1348	6	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	-2	-45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	929.313423985686	1	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATATGTTTAATAAATAT	NA	False	NA	NA	False	NA	NA	NA	20151429	20175419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168916_20173101_20173180_20174399_20174499_20174647
54798	chr9	-	1679	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	-6	0	2	0	multi-exon	FALSE	canonical	3	105	junction_8	44.5222907654132	798	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5890	False	NA	NA	False	NA	NA	NA	21996729	21983541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
54799	chr2	-	1757	2	FSM	ENSMUSG00000027459.17	ENSMUST00000062047.6	1754	2	-3	0	-3	0	multi-exon	FALSE	canonical	3	86	junction_1	0	236	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGACTCTTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	151822142	151811317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_151812845_151821912
54800	chr7	-	2478	3	FSM	ENSMUSG00000045757.7	ENSMUST00000059199.7	2508	3	16	14	16	13	multi-exon	FALSE	canonical	2	4	junction_2	2.5	31	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAACAAAAACCCCACAAAT	8617	False	NA	NA	False	NA	NA	NA	127005978	127002853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127004832_127005337_127005452_127005592
54801	chr14	-	2505	9	NNC	ENSMUSG00000022159.17	novel	1573	9	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.3037265643139	1	105	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGCTACTTTTATTTCA	NA	False	NA	NA	False	NA	NA	NA	52516710	52499230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52500133_52500226_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
54803	chr1	+	3529	19	Antisense	novelGene_ENSMUSG00000098606.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCGGCCTAGATCCTTG	NA	False	NA	NA	False	NA	NA	NA	133634659	133681190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_133634735_133642791_133642967_133644240_133644351_133645525_133645741_133646440_133646655_133647061_133647259_133654199_133654300_133655458_133655547_133656432_133656611_133657447_133657697_133658114_133658349_133659400_133659644_133659963_133660177_133662783_133662948_133665727_133665856_133666274_133666397_133666896_133667159_133667651_133667848_133680824
54804	chr3	-	2038	6	FSM	ENSMUSG00000074489.10	ENSMUST00000107542.2	2051	6	9	4	9	-4	multi-exon	FALSE	canonical	3	20	junction_5	10.571660229122	42	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAAGTGCTGGGCTGGAG	7137	False	NA	NA	False	NA	NA	NA	88280041	88275932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88277434_88278787_88279845
54805	chr6	+	1475	5	FSM	ENSMUSG00000030341.18	ENSMUST00000134803.2	764	5	-102	-609	-102	-1	multi-exon	FALSE	canonical	3	27	junction_3	5.67340285895511	78	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTGACCCTGGAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	125337287	125339446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
54806	chr17	+	3597	6	FSM	ENSMUSG00000024065.9	ENSMUST00000024860.9	3659	6	56	6	56	-6	multi-exon	FALSE	canonical	1	2	junction_5	1.35646599662505	11	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTACTCTTTTGGTGACT	NA	False	NA	NA	False	NA	NA	NA	74111891	74139083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_74112465_74123225_74123403_74127472_74127571_74134144_74134558_74135040_74135206_74136912
54807	chr9	-	1919	12	NNC	ENSMUSG00000090626.10	novel	793	9	NA	NA	-9	-1704	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.5470802237103	23	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTGTGTGTG	7867	False	NA	NA	False	NA	NA	NA	72399252	72359379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_72360195_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
54808	chr13	-	1450	5	NNC	ENSMUSG00000058672.8	novel	1610	4	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.838673818345	5	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATCTATGGTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	34261990	34258266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34259125_34259274_34259512_34260160_34260272_34260531_34260641_34261855
54809	chr10	+	2462	5	NIC	ENSMUSG00000001436.16	novel	2309	6	NA	NA	25	-33	intron_retention	FALSE	canonical	0	0	junction_2	46.0020379983322	1	101	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACTTGACATTAAAATGG	NA	False	NA	NA	False	NA	NA	NA	76868542	76886232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_76868615_76874183_76874414_76877649_76878809_76880594_76880737_76885373
54810	chr17	-	765	6	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1971.00394723095	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACTCATTTTCTTACAC	NA	False	NA	NA	False	NA	NA	NA	15718560	15696225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714763_15718441
54811	chr2	-	916	8	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	1	69	junction_4	2031.82598081788	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9573	False	NA	NA	False	NA	NA	NA	10085252	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068917_10069123_10073420_10073553_10074503_10074539_10085158
54812	chr4	-	1630	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	244	6	244	-6	multi-exon	FALSE	canonical	3	980	junction_1	0	1	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAATTCGGTTCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	127224393	127219033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127220565_127224294
54814	chr15	+	2316	11	NIC	ENSMUSG00000032783.10	novel	2639	14	NA	NA	15	-3	intron_retention	FALSE	canonical	3	25	junction_1	19.3930399886145	9	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATCAGGGGCCTCCAG	NA	False	NA	NA	False	NA	NA	NA	98972882	98980482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_98972949_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979851_98980006
54815	chr1	+	1110	8	NNC	ENSMUSG00000026020.10	novel	891	6	NA	NA	82	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	830.163962167494	2	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59731684	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743333_59749707_59749812_59750429
54816	chr5	+	1877	11	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	4	-4011	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	50.8182053992464	1	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGGACAGGTAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	37204779	37278357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_37204890_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284
54817	chrX	+	1874	1	Antisense	novelGene_ENSMUSG00000081959.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTGTTTTGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	8932463	8934337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_8932500_8934300
54818	chr11	-	2508	14	NNC	ENSMUSG00000038909.17	novel	3470	14	NA	NA	14	228	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	373.809938100213	1	131	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCATTGTGTAGAAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	95201001	95165920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167301_95167376_95168294_95168434_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185402_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
54819	chr11	+	1005	5	NNC	ENSMUSG00000039640.8	novel	1316	5	NA	NA	46	277	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	465.77965552394	103	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGACCACCTGGAGGCA	9001	False	NA	NA	False	NA	NA	NA	120375484	120379560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120375595_120376068_120376256_120376481_120376635_120378922_120379061_120379143
54820	chr17	-	874	4	ISM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	136	-1	-82	0	3prime_fragment	FALSE	canonical	3	921	junction_2	26.8865931067677	545	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9534	False	NA	NA	False	NA	NA	NA	27158261	27156945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857
54821	chr10	+	1448	5	FSM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	-4	0	-4	0	multi-exon	FALSE	canonical	3	742	junction_3	32.2286751201473	808	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	81220257	81224186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81223540
54822	chr9	-	2436	19	Antisense	novelGene_ENSMUSG00000042185.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCGGAAGGGGCGGGAC	NA	False	NA	NA	False	NA	NA	NA	31321209	31297464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_31297562_31300167_31300346_31303258_31303463_31306000_31306127_31307618_31307792_31308087_31308428_31309009_31309098_31309861_31309938_31310441_31310626_31311234_31311343_31311871_31311998_31312231_31312296_31313344_31313430_31313528_31313575_31314309_31314368_31314743_31314925_31316845_31316954_31320567_31320692_31321139
54824	chr2	+	1413	8	ISM	ENSMUSG00000033852.17	ENSMUST00000162393.8	5092	27	21	10441	7	-2401	5prime_fragment	FALSE	canonical	3	18	junction_5	45.292248289327	596	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACACTTGTTCTCATGTT	NA	False	NA	NA	False	NA	NA	NA	119857994	119863073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594
54827	chr4	-	3560	1	Intergenic	novelGene_1968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTACGTCCTACTGAAGA	NA	False	NA	NA	False	NA	NA	NA	131617503	131613943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_131613900_131617500
54829	chr3	-	328	4	NNC	ENSMUSG00000005625.16	novel	314	3	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	949.980467635461	41	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTTCCCCTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	94949861	94940022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94940103_94943171_94943236_94943915_94944057_94949818
54830	chr17	-	2460	4	NNC	ENSMUSG00000117234.2	novel	1756	2	NA	NA	-11187	580	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	1.69967317119759	7	64	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTATGTAACTCCAATAA	NA	False	NA	NA	False	NA	NA	NA	22300056	22285664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22287883_22288751_22288879_22297569_22297618_22299989
54831	chr7	-	1539	1	ISM	ENSMUSG00000035354.10	ENSMUST00000037968.10	5157	15	252833	1749	55597	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	34	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTGAATTTACTTCACA	1618	False	NA	NA	False	NA	NA	NA	98537515	98535976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_98536000_98537500
54832	chr1	-	3050	20	NIC	ENSMUSG00000026458.14	novel	4674	22	NA	NA	234	4	combination_of_known_splicesites	FALSE	canonical	2	8	junction_16	12.965755023295	2	30	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTGCTTGGACTAATTG	NA	False	NA	NA	False	NA	NA	NA	134254770	134226114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134251816_134251949_134252248_134252333_134254221_134254357_134254553
54833	chr2	+	1712	10	NNC	ENSMUSG00000027323.11	novel	3368	10	NA	NA	2	499	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.570000767664	2	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTAGTTGTGTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	118943299	118966188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118943501_118946789_118946882_118949091_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118962002_118962099_118964554_118964685_118964867_118964995_118965562
54834	chrX	-	2060	2	Intergenic	novelGene_4060	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	68	junction_1	0	31	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTAGAGTTTTTATGTGA	NA	False	NA	NA	False	NA	NA	NA	138300878	138296082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_138297544_138300279
54835	chr3	+	544	6	Antisense	novelGene_ENSMUSG00000027679.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11570	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGATGCCGCCACTTCCAC	NA	False	NA	NA	False	NA	NA	NA	34131498	34135425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_34131673_34132922_34132995_34133353_34133433_34134231_34134306_34134378_34134434_34135335
54836	chr8	+	1254	10	NNC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	10	170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	841.592112576287	1738	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCGTCATCGTGCCA	NA	False	NA	NA	False	NA	NA	NA	95584155	95590539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95587247_95587331_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
54837	chr1	+	1396	2	NIC	ENSMUSG00000049881.14	novel	1194	3	NA	NA	122	-3	intron_retention	FALSE	canonical	3	1042	junction_1	0	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAACTTTGCTGGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	157240331	157247800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_157241366_157247438
54839	chr18	+	4727	27	ISM	ENSMUSG00000039840.9	ENSMUST00000044622.7	9660	44	1	37739	1	5646	5prime_fragment	FALSE	canonical	2	14	junction_24	4.27182873135841	6	98	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACGTTAACCGGGAAGAT	NA	False	NA	NA	False	NA	NA	NA	77981680	78040489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_77981775_77991364_77992298_77994363_77994608_77997375_77997513_77997947_77998056_77999121_77999196_78000621_78000728_78002244_78002360_78002694_78002846_78003921_78004078_78005595_78005754_78008115_78008271_78011751_78011893_78015709_78015875_78018193_78018314_78019051_78019309_78022338_78022480_78024155_78024301_78024512_78024711_78025522_78025634_78026685_78026806_78028255_78028423_78029600_78029823_78031478_78031603_78034560_78034706_78038726_78038899_78040421
54840	chr14	-	1271	6	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1431.1233909066	2	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8749	False	NA	NA	False	NA	NA	NA	52341461	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315095_52321565_52321849_52341345
54841	chr5	-	1608	1	NIC	ENSMUSG00000097772.8	novel	626	5	NA	NA	203	1171	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTGTAGGGGTTGGTCC	NA	False	NA	NA	False	NA	NA	NA	100577031	100575423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100575400_100577000
54842	chr5	-	761	1	NIC	ENSMUSG00000097772.8	novel	626	5	NA	NA	1861	1982	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACGAAATACAGGAAAGGT	NA	False	NA	NA	False	NA	NA	NA	100575373	100574612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100574600_100575400
54843	chr8	+	1497	6	NNC	ENSMUSG00000031770.17	novel	1952	8	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	175.560359990517	9	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGTAGCAGAGACTCCC	NA	False	NA	NA	False	NA	NA	NA	95113122	95121979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95113367_95115983_95116062_95116148_95116224_95118919_95119153_95120423_95120530_95121218
54845	chr15	+	2341	4	NIC	ENSMUSG00000033728.15	novel	2286	6	NA	NA	-1	4	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	48.3206880009887	48	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGGCTTTTTTGATGTG	NA	False	NA	NA	False	NA	NA	NA	76594841	76599239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76595284_76597066_76597421_76597600_76598186_76598279
54846	chr16	-	2171	11	NIC	ENSMUSG00000022948.17	novel	2408	12	NA	NA	33	-2	intron_retention	TRUE	canonical	2	8	junction_5	42.748216337059	1	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATCATTTGCAGACTGT	NA	False	NA	NA	False	NA	NA	NA	93400918	93380352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400861
54847	chr19	-	1269	9	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	140	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	80.9180719926025	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	4423	False	NA	NA	False	NA	NA	NA	6117451	6112850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116594_6116997_6117053_6117152
54849	chrX	+	1874	11	NIC	ENSMUSG00000009995.18	novel	1851	10	NA	NA	65	-17	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	91.7228979045037	242	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTTGTGCCACCATA	NA	False	NA	NA	False	NA	NA	NA	73325582	73333737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73325647_73326323_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332267_73332321_73332710_73332789_73332904
54850	chr11	+	1578	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	1	-14	multi-exon	FALSE	canonical	3	1960	junction_1	0	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	120653620	120655231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
54851	chr17	-	1351	2	FSM	ENSMUSG00000067288.14	ENSMUST00000174788.2	812	2	-11	-528	-1	-6	multi-exon	FALSE	canonical	3	16929	junction_1	0	106	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTAATTCTTGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	34043469	34042031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34043321_34043407
54852	chrX	+	428	1	ISM	ENSMUSG00000036959.16	ENSMUST00000136348.8	7446	15	66128	136	38218	-136	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTGTTTTCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	47496362	47496790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_47496400_47496800
54853	chr16	+	2228	10	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	143	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTCCGCACCACCTCCGC	5631	False	NA	NA	False	NA	NA	NA	22064642	22084648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065617_22065940_22066016_22067187_22067248_22067800_22067886_22069615_22069737_22071364_22071545_22073157_22073327_22073737_22073867_22077734_22078004_22084482
54854	chr8	-	2043	2	Intergenic	novelGene_1703	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	144	junction_1	0	30	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTGAAAAAAAAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	89779661	89774465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89776356_89779508
54856	chr11	+	1670	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	15	0	15	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	256	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6389	False	NA	NA	False	NA	NA	NA	78079619	78083014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
54857	chr15	+	3061	22	NNC	ENSMUSG00000015365.16	novel	4133	27	NA	NA	13706	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	16.1893557035244	1	116	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCCCAGACCCCTTTCTG	3968	False	NA	NA	False	NA	NA	NA	88880902	88939345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565_88895625_88896131_88896209_88896274_88896399_88902352_88902453_88904463_88904643_88905366_88905514_88906203_88906326_88907815_88907916_88908869_88909035_88910665_88910840_88931009_88931160_88937580_88937689_88938429_88938568_88938713_88938834_88939018
54859	chr7	+	1208	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	-11	0	-11	0	multi-exon	FALSE	canonical	3	2081	junction_3	279.620725269069	3601	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8520	False	NA	NA	False	NA	NA	NA	27869123	27878694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
54860	chr8	+	1295	5	NIC	ENSMUSG00000003812.14	novel	1715	6	NA	NA	24	-298	intron_retention	FALSE	canonical	3	87	junction_2	4.96865172858795	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTCTCTGTGTAGCC	NA	False	NA	NA	False	NA	NA	NA	85635383	85637792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636599_85637314
54861	chr17	-	3391	7	FSM	ENSMUSG00000056515.10	ENSMUST00000070673.9	3473	7	82	0	-30	0	multi-exon	TRUE	canonical	3	62	junction_1	10.1775897605147	96	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCCTTTCCTCATT	NA	False	NA	NA	False	NA	NA	NA	66079665	65958723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_65961499_65974860_65974971_66003265_66003373_66004985_66005058_66024476_66024559_66029002_66029083_66079500
54862	chr7	+	925	1	ISM	ENSMUSG00000059273.10	ENSMUST00000098789.5	6039	14	35560	4	21922	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	58	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTCTGTGAGTCTAGTC	NA	False	NA	NA	False	NA	NA	NA	16170691	16171616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_16170700_16171600
54863	chr12	-	899	2	Genic_Genomic	ENSMUSG00000066553.6	novel	342	1	NA	NA	-54	663	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATGAAGATGTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24689063	24688004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_24688688_24688847
54865	chr5	+	1710	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	35	2	0	-2	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	174	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCCCTGGACTGGGTAAC	NA	False	NA	NA	False	NA	NA	NA	76288152	76303324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
54866	chr8	+	1006	4	NIC	ENSMUSG00000031818.13	novel	745	5	NA	NA	-21	-2	intron_retention	FALSE	canonical	3	8115	junction_1	513.621347773716	35	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCTGTGTGGTTCATTC	NA	False	NA	NA	False	NA	NA	NA	121395025	121400944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_121395095_121396047_121396122_121399463_121400092_121400709
54867	chr13	+	1703	17	FSM	ENSMUSG00000003992.16	ENSMUST00000004094.15	3957	17	70	2184	-7	9	multi-exon	TRUE	canonical	3	38	junction_13	7.3396930283221	155	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGTGTCTGAAGCAAG	2791	False	NA	NA	False	NA	NA	NA	91609238	91849364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
54868	chr5	-	1530	10	NNC	ENSMUSG00000040013.12	novel	1447	9	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	424.675329872679	2195	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	NA	False	NA	NA	NA	135378889	135320557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135320966_135339297_135339390_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
54869	chr16	+	1532	8	NNC	ENSMUSG00000022849.6	novel	1703	8	NA	NA	14	-103	at_least_one_novel_splicesite	TRUE	canonical	1	4	junction_4	211.491206938362	3	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATATGATATACGTGTAT	5418	False	NA	NA	False	NA	NA	NA	35590758	35645815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637575_35637694_35639048_35639133_35645058_35645170_35645252
54870	chr2	-	1396	3	NIC	ENSMUSG00000015335.17	novel	1187	5	NA	NA	29	3	intron_retention	FALSE	canonical	3	80	junction_2	301	5	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGCTGCCGTGGACTCT	NA	False	NA	NA	False	NA	NA	NA	29983599	29980959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_29982078_29982416_29982554_29983458
54871	chr9	-	1876	4	NIC	ENSMUSG00000032562.14	novel	2215	9	NA	NA	454	-9	intron_retention	FALSE	canonical	3	1026	junction_1	121.249971363112	4	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAAAAACTTCCGTGTTC	NA	False	NA	NA	False	NA	NA	NA	107494217	107491332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107492298_107492810_107493508_107493612_107493743_107494133
54872	chrX	+	1939	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088629.4	1951	3	0	12	0	-12	multi-exon	FALSE	canonical	3	14	junction_2	99.5	75	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTAAATTATTTTTGTGA	9867	False	NA	NA	False	NA	NA	NA	57076369	57087084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_57077598_57078721_57078886_57086537
54873	chr11	+	1092	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-27	-17546	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	496.860364913747	1	58	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATCTTCCTATTTATT	9404	False	NA	NA	False	NA	NA	NA	88861050	88864234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861150_88861243_88861306_88861723_88861846_88863425
54875	chr4	-	2723	20	Antisense	novelGene_ENSMUSG00000039713.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	25	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGAACCGAGCGCCGCGG	NA	False	NA	NA	False	NA	NA	NA	152198549	152171344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_152171401_152172099_152172177_152186498_152186628_152187443_152187548_152187868_152187932_152188207_152188298_152188664_152188801_152189059_152189213_152190522_152190733_152190824_152191016_152191360_152191464_152192152_152192318_152192431_152192543_152192636_152192788_152192858_152192995_152193131_152193253_152196562_152196695_152196776_152196893_152196972_152197155_152198252
54876	chr4	-	2533	11	NNC	ENSMUSG00000028479.19	novel	5384	12	NA	NA	1135	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	17.2580416038437	30	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGATATCTGGTCCCA	7233	False	NA	NA	False	NA	NA	NA	44065785	44036828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44065546
54877	chr17	+	1471	8	NIC	ENSMUSG00000034729.17	novel	1109	7	NA	NA	46	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	738.520611680914	6	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTGGTTTTGTTTAC	7194	False	NA	NA	False	NA	NA	NA	47679868	47689605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_47680283_47681188_47681296_47683351_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
54878	chr4	-	1148	7	NNC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	239.191287931275	2690	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTCTTTCTCGTTATAC	NA	False	NA	NA	False	NA	NA	NA	134642310	134625162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640479_134642199
54880	chr4	-	2016	7	NIC	ENSMUSG00000028885.9	novel	2006	8	NA	NA	73	-1	intron_retention	FALSE	canonical	3	69	junction_4	9.24962461700774	159	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACCGTGAGGGATCACAG	NA	False	NA	NA	False	NA	NA	NA	132484490	132460277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132461071_132465329_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
54881	chr10	+	2552	18	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	4	-148	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	251.184667175808	1	147	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAACAGTGAAGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	21171960	21244634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220979_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
54884	chr5	+	1879	9	ISM	ENSMUSG00000029432.13	ENSMUST00000124342.8	1600	11	14371	-1	-13188	1	intron_retention	FALSE	canonical	3	290	junction_8	37.6397396377818	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGATGTCTAATTTTTACA	NA	False	NA	NA	False	NA	NA	NA	129816533	129835315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
54885	chr10	+	2634	16	NNC	ENSMUSG00000005682.10	novel	4316	26	NA	NA	10145	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	91.1430133849484	1	114	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACCGCTAGTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	128149411	128157216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128149613_128149710_128149911_128150051_128150186_128150316_128150428_128150600_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153756_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
54886	chr8	-	2530	6	ISM	ENSMUSG00000031681.17	ENSMUST00000066091.14	3099	7	27457	0	-15383	0	3prime_fragment	FALSE	canonical	3	102	junction_2	13.614697940094	58	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCATTTTTTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	80098690	80065023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_80066422_80070282_80070540_80076219_80076442_80079958_80080076_80082840_80083099_80098412
54887	chr8	+	2110	5	NNC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-141	2863	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	81.9832299924808	16	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGCCCATTAACTTTATGA	NA	False	NA	NA	False	NA	NA	NA	14938862	14947922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530_14947450_14947778
54890	chr7	+	1939	1	NIC	ENSMUSG00000063931.15	novel	1881	15	NA	NA	-1291	395	mono-exon	FALSE	NA	NA	NA	NA	NA	99	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGCAGAGTCCCCAAAAG	NA	False	NA	NA	False	NA	NA	NA	34738615	34740554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_34738600_34740600
54891	chr7	-	1094	7	NNC	ENSMUSG00000002635.12	novel	1295	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	88	junction_6	249.733190959205	25	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5724	False	NA	NA	False	NA	NA	NA	33896094	33884057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895789_33895960
54892	chrX	+	1521	10	NNC	ENSMUSG00000009995.18	novel	1851	10	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	92.4519227744418	17	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATACCTCTGTCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	73326395	73333751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73326492_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332267_73332321_73332710_73332789_73332904
54893	chr4	+	1279	11	NNC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-145	-13	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	93.7608127097883	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTTTTCTGACACCAGA	14	False	NA	NA	False	NA	NA	NA	41755612	41758682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_41755735_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
54894	chr4	-	1156	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	90	19	-2	-19	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	57	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGTTAGGCTTGGAATG	NA	False	NA	NA	False	NA	NA	NA	133695222	133692067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
54895	chr7	-	2792	25	FSM	ENSMUSG00000048677.10	ENSMUST00000058022.6	2993	25	60	141	-20	0	multi-exon	FALSE	canonical	3	14	junction_4	4.91860837364933	28	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTACTCTGACCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	144837688	144807800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_144808436_144809187_144809271_144809616_144809699_144810250_144810334_144810466_144810549_144810908_144810983_144811532_144811605_144812251_144812352_144813825_144813876_144814608_144814738_144815669_144815730_144815884_144816005_144820294_144820382_144820514_144820597_144821039_144821141_144821804_144821870_144822596_144822663_144823470_144823571_144826016_144826093_144827598_144827706_144830845_144830963_144832473_144832652_144833013_144833091_144833965_144834031_144837587
54897	chr7	-	2279	13	ISM	ENSMUSG00000040907.16	ENSMUST00000196684.2	3642	23	11509	7	11461	-7	intron_retention	FALSE	canonical	3	25	junction_10	11.3907857498945	68	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGAAAAGATGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	24693859	24677601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556
54900	chr1	-	1381	13	NNC	ENSMUSG00000026245.17	novel	1951	17	NA	NA	7	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	377.799844126784	1	58	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGTGAAATGTGCTAT	NA	False	NA	NA	False	NA	NA	NA	78465489	78401745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449181_78465417
54903	chr19	-	567	4	ISM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	21	2707	5	-238	5prime_fragment	FALSE	canonical	3	1199	junction_3	50.9901951359278	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCGGTGGGAATTGAACC	984	False	NA	NA	False	NA	NA	NA	44134864	44130404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_44130668_44131459_44131580_44134379_44134497_44134797
54904	chr7	+	1528	9	ISM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	34	47	34	-28	intron_retention	FALSE	canonical	3	172	junction_3	23.6207006669997	207	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	127440969	127448144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559
54905	chr11	+	1690	7	NNC	ENSMUSG00000069844.13	novel	2412	6	NA	NA	3	-77	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	109.193126564308	2	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCATTCTTCCCAAACAC	NA	False	NA	NA	False	NA	NA	NA	66943498	66956321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731_66955473_66956114
54906	chr8	-	1418	7	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	2	0	intron_retention	FALSE	canonical	3	44	junction_6	49.5838235269887	358	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	NA	False	NA	NA	NA	106434840	106430283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106430654_106430744_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
54907	chr13	-	1699	9	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6151	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	16.8072714918276	127	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGCATAATTGACTACTG	5031	False	NA	NA	False	NA	NA	NA	91365927	91083480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365645_91365723_91365852
54909	chr7	+	2488	6	NNC	ENSMUSG00000109947.2	novel	459	2	NA	NA	-8397	-6105	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	79	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATGACTGCGCAGGAAA	NA	False	NA	NA	False	NA	NA	NA	44732435	44741639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44732790_44732990_44734388_44736087_44736261_44737920_44738124_44740863_44741109_44741523
54910	chr5	+	1364	10	ISM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	839	11	771	-11	3prime_fragment	FALSE	canonical	3	315	junction_9	34.5289286480228	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTTTTATTTGCGTG	7725	False	NA	NA	False	NA	NA	NA	65549678	65566539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
54911	chr17	-	1389	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	31	0	31	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	459	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	48739927	48726258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_48726662_48729968_48730534_48739506
54912	chr14	-	1775	10	NNC	ENSMUSG00000006288.9	novel	1842	10	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	268.066925492889	1	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCCTATAGTTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	51022972	51002875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014777_51014870_51015213_51015426_51018931_51019065_51022894
54913	chr19	-	1102	9	NNC	ENSMUSG00000036748.17	novel	1833	9	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	384.493640226987	1600	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGTATATGCTCATTCT	5820	False	NA	NA	False	NA	NA	NA	46327101	46318986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319981_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46327007
54914	chr4	+	2522	13	ISM	ENSMUSG00000028284.14	ENSMUST00000037607.11	5773	17	15716	2665	315	1242	3prime_fragment	TRUE	canonical	3	147	junction_2	18.6478700005002	57	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCCTAAGATCTATTT	NA	False	NA	NA	False	NA	NA	NA	31979812	32020802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_31979875_31981457_31981583_31985685_31985815_31988588_31988720_31989933_31990016_31991712_31991844_31992386_31992517_31994873_31994955_32002088_32002154_32010315_32010422_32015938_32016001_32017036_32017153_32019500
54915	chr5	+	1201	9	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	62	-532	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	853.172745916675	1	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45650777	45669501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662138_45669260
54916	chr6	-	1060	1	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTCACAACATAAGGAAAAAA	6404	False	NA	NA	False	NA	NA	NA	67261007	67259947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67259900_67261000
54918	chr2	-	2263	15	FSM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	6	4	6	-3	multi-exon	FALSE	canonical	3	280	junction_8	41.2442327446381	754	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTCCTATTCTCCTAGC	NA	False	NA	NA	False	NA	NA	NA	32584191	32572624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
54919	chr16	+	2328	9	FSM	ENSMUSG00000022811.18	ENSMUST00000089677.7	4032	9	-17	1721	-17	-434	multi-exon	FALSE	canonical	0	0	junction_1	49.7642881492341	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCAATAGCTTTCGATCA	NA	False	NA	NA	False	NA	NA	NA	33220797	33317292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_33220929_33241690_33241773_33247563_33247700_33254995_33255345_33277245_33277372_33287224_33287349_33288469_33288554_33315714_33315834_33316115
54921	chr10	+	1385	12	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	24	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	204.947604672894	1	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTGATGTGCTCGGT	1032	False	NA	NA	False	NA	NA	NA	127851088	127865899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854095_127857551_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
54922	chr7	-	1373	11	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	932.904952286137	1	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTCTTCTTAGGTGT	NA	False	NA	NA	False	NA	NA	NA	27749481	27741136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27741346_27741525_27741582_27741770_27741933_27742074_27742135_27742226_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
54923	chr6	+	1754	12	FSM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	6	4	-4	0	multi-exon	FALSE	canonical	3	485	junction_5	30.2182146373304	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTGTGTCTGTGTGTG	6580	False	NA	NA	False	NA	NA	NA	134988580	135000735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
54924	chr4	-	910	1	Antisense	novelGene_ENSMUSG00000017264.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCAGGAGGGTCAGAAG	NA	False	NA	NA	False	NA	NA	NA	148655569	148654659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_148654700_148655600
54925	chr17	-	2059	1	Intergenic	novelGene_282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGACAGACAGACAGACAG	NA	False	NA	NA	False	NA	NA	NA	66786731	66784672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66784700_66786700
54926	chr17	-	2153	8	NIC	ENSMUSG00000036820.13	novel	1651	12	NA	NA	15	-29	intron_retention	FALSE	canonical	3	306	junction_6	20.1808152987546	2	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTGGCTTGGATAAATAC	NA	False	NA	NA	False	NA	NA	NA	24382725	24374842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24375647_24376501_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382307_24382555
54927	chr7	-	2333	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	545	0	8	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	235	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	7938	False	NA	NA	False	NA	NA	NA	3695977	3680787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
54928	chr7	-	2058	14	Antisense	novelGene_ENSMUSG00000003437.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	203	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGCTACCAAGACGCAGA	NA	False	NA	34	True	NA	NA	NA	28098904	28092415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_28092677_28093090_28093122_28094465_28094559_28094840_28094964_28095052_28095119_28095193_28095298_28095376_28095482_28095557_28095626_28095706_28095810_28096031_28096152_28096245_28096372_28097867_28097984_28098086_28098173_28098248
54929	chr6	-	1474	10	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	6	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3371.24920613658	2	83	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTTGTATCCAAATTAC	NA	False	NA	NA	False	NA	NA	NA	51446819	51438116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442272_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51446650
54930	chr3	-	757	3	NNC	ENSMUSG00000027835.12	novel	697	3	NA	NA	260	171	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGATGCATATATATA	NA	False	NA	NA	False	NA	NA	NA	75428077	75424411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75424909_75425615_75425807_75428008
54931	chr11	+	1815	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	15	2	15	-2	multi-exon	FALSE	canonical	3	1066	junction_1	20	1409	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTAGGTTCAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	51858502	51868159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51858785_51860970_51861071_51866726
54934	chr18	+	1931	5	NNC	ENSMUSG00000002477.6	novel	858	4	NA	NA	-5	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	953.019543346305	7	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGAGTTGTCTGTTGA	-6	True	NA	NA	False	NA	NA	NA	10617859	10627967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_10617927_10623630_10623708_10624864_10625021_10625560_10627018_10627793
54935	chr15	-	2192	5	FSM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	21	-1	-15	1	multi-exon	FALSE	canonical	3	11	junction_4	6.04152298679729	39	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGGCTCTGAGTTTGTT	8506	False	NA	NA	False	NA	NA	NA	76809627	76794569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76796376_76801489_76801604_76801834_76801962_76802168_76802262_76809575
54936	chr4	-	1104	9	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	12264	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.903578392889	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	7077	False	NA	NA	False	NA	NA	NA	129216173	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203674_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129215948_129216096
54937	chr6	+	1158	9	NIC	ENSMUSG00000040112.10	novel	4162	8	NA	NA	8	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	305.916629778441	2183	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTATTGTCTTACGTC	NA	False	NA	NA	False	NA	NA	NA	146944269	146972396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962702_146962800_146962920_146962991_146972051
54939	chr14	-	1721	5	Fusion	ENSMUSG00000096488.2_ENSMUSG00000095195.8	novel	1955	7	NA	NA	5	0	multi-exon	FALSE	canonical	0	0	junction_3	1.6393596310755	74	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	NA	NA	NA	19057154	18875552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_19057054
54940	chr7	-	2596	14	NIC	ENSMUSG00000019734.17	novel	2310	15	NA	NA	-4	8	intron_retention	FALSE	canonical	3	10	junction_9	9.70816773186677	2	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAACCCCGTTCTGAAG	5463	False	NA	NA	False	NA	NA	NA	3680487	3668780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678571_3679562_3679768_3680422
54941	chr7	-	956	8	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	51	-612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	721.857326623482	1	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59654808	59632861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634899_59637187_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
54942	chr4	-	2554	14	NNC	ENSMUSG00000028207.19	novel	2685	14	NA	NA	-66	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	165.865276477111	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAGATTGTCATTATTT	4350	False	NA	NA	False	NA	NA	NA	9639326	9575267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_9576974_9580219_9580294_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197
54943	chrX	+	1114	12	NIC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	68	-8	combination_of_known_splicesites	FALSE	canonical	3	47	junction_1	236.531898151127	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGGAGCTGGAGTGCCT	360	False	NA	NA	False	NA	NA	NA	73356799	73363732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73356932_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
54944	chr6	-	857	7	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2150.64832602223	2	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471709	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437470_125439098_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
54945	chrX	-	1980	3	FSM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	-22	16	-22	-7	multi-exon	FALSE	canonical	3	154	junction_2	61	383	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTCTAAAAATAAACTTG	NA	False	NA	NA	False	NA	NA	NA	139443958	139440292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_139441857_139442853_139442906_139443594
54946	chr1	-	4551	1	Antisense	novelGene_ENSMUSG00000056268.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTATATACAGTACAGGAG	NA	False	NA	NA	False	NA	NA	NA	139103781	139099230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_139099200_139103800
54947	chr11	-	3712	19	Antisense	novelGene_ENSMUSG00000020705.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTGAGGCCCCAGACTC	NA	False	NA	NA	False	NA	NA	NA	106139745	106112202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_106112281_106112785_106112856_106114904_106115145_106115609_106115759_106119586_106119651_106121155_106121193_106121957_106122106_106123629_106123736_106125676_106125796_106126430_106126608_106127818_106127949_106129331_106129433_106129960_106130010_106130827_106130924_106132374_106132651_106133697_106133923_106136147_106136263_106137600_106137706_106138318
54948	chr11	-	2257	11	FSM	ENSMUSG00000038967.14	ENSMUST00000038431.8	2246	11	-11	0	-11	0	multi-exon	FALSE	canonical	3	33	junction_1	6.12290780593665	64	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGCCTGGCTTCCTTGC	6063	False	NA	NA	False	NA	NA	NA	94932191	94917083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94918149_94918690_94918805_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94930174_94930317_94931964
54949	chr6	+	1980	11	ISM	ENSMUSG00000034930.17	ENSMUST00000087938.11	3080	12	8768	16	-1957	-16	3prime_fragment	FALSE	canonical	3	54	junction_8	8.87693640846886	195	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTAACAGCTCGATGCC	1116	False	NA	NA	False	NA	NA	NA	83122858	83129544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
54950	chr10	-	2117	10	NNC	ENSMUSG00000019813.17	novel	1769	11	NA	NA	-44	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	85.1949108779754	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCTAAAAGCCTGTGGA	82	False	NA	NA	False	NA	NA	NA	41685911	41594847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41605328_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685841
54951	chr10	-	2440	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	73	0	73	0	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	94	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	NA	False	NA	NA	NA	42354488	42188580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
54952	chr18	+	1951	3	NNC	ENSMUSG00000110277.3	novel	1929	3	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	46.5	1	82	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTGTCTTGGTCATAG	NA	False	NA	NA	False	NA	NA	NA	90597918	90610650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_90598024_90607079_90607207_90608931
54954	chr1	+	2195	2	ISM	ENSMUSG00000026111.16	ENSMUST00000134184.2	730	4	4378	-379	4378	379	3prime_fragment	FALSE	canonical	3	515	junction_1	0	1	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGCTAAAATGTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	37474802	37477072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_37476383_37476457
54955	chr7	-	1771	14	NIC	ENSMUSG00000030720.17	novel	2386	15	NA	NA	-7	0	intron_retention	FALSE	canonical	3	116	junction_10	20.5074672501933	300	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	126182405	126171257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
54956	chr14	-	1438	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	12	697	12	173	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	510	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCACATGCATCTGAGTT	NA	False	NA	NA	False	NA	NA	NA	25928084	25924420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
54957	chr12	-	1923	13	FSM	ENSMUSG00000055917.16	ENSMUST00000069692.10	2438	13	4	511	4	-511	multi-exon	FALSE	canonical	2	4	junction_11	159.233493824495	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGACTGAAGAAACTTTG	NA	False	NA	NA	False	NA	NA	NA	40495769	40365555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40460574_40460953_40495664
54958	chr2	+	1353	8	FSM	ENSMUSG00000098789.8	ENSMUST00000044675.5	1373	8	16	4	-5	-4	multi-exon	FALSE	canonical	3	72	junction_5	32.3128836376389	600	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATACACTTGTTCTCATG	NA	False	NA	138	True	NA	NA	NA	119857979	119863071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
54959	chr10	+	3158	5	NIC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	1	655	intron_retention	FALSE	canonical	0	0	junction_2	44.4606567652796	2	111	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTACATCCAGAGTCTGC	NA	False	NA	NA	False	NA	NA	NA	76869102	76886921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_76869182_76874183_76874414_76877649_76878809_76880594_76880737_76885373
54961	chr1	-	2646	2	ISM	ENSMUSG00000041945.13	ENSMUST00000039672.6	3160	6	9114	32	9108	-29	3prime_fragment	FALSE	canonical	3	10	junction_1	0	16	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTCAGGGAAATTAAAT	NA	False	NA	NA	False	NA	NA	NA	40820709	40811229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_40813707_40820540
54962	chr14	-	1111	9	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGGGCACTGGTCAGT	NA	False	NA	NA	False	NA	NA	NA	63380560	63370847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63370913_63371410_63371489_63373103_63373170_63373853_63373974_63375480_63375574_63375815_63375942_63376445_63376506_63379722_63380183_63380517
54963	chr1	-	1748	6	NNC	ENSMUSG00000026279.15	novel	2096	6	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	163.857987293876	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTAGACTGTACAT	NA	False	NA	NA	False	NA	NA	NA	93682340	93633111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93652983_93677705_93678708_93682178
54964	chr15	+	1553	15	NNC	ENSMUSG00000022437.8	novel	4629	15	NA	NA	54	-2963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	488.098418688824	4	46	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTGTCCTGGATGTGGTC	NA	False	NA	NA	False	NA	NA	NA	84076495	84098505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084576_84084840_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
54965	chr11	+	1174	2	NIC	ENSMUSG00000086841.2	novel	462	5	NA	NA	0	-1	intron_retention	FALSE	canonical	3	4735	junction_1	0	342	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGCCAGTGTTTTGGAT	NA	False	NA	NA	False	NA	NA	NA	62493702	62495632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62494473_62495228
54966	chr15	-	1222	5	NNC	ENSMUSG00000061360.9	novel	1663	4	NA	NA	15	144	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	626.555414548466	13	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTTAACTTTGAACGTCT	NA	False	NA	NA	False	NA	NA	NA	81756097	81749525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81750094_81751368_81751748_81754532_81754700_81755366_81755391_81756013
54969	chr10	+	1211	4	NIC	ENSMUSG00000064030.16	novel	1158	3	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	137.41502424731	621	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCAGGCTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	128583758	128602431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128583868_128586151_128586207_128601015_128601110_128601478
54970	chr10	+	1604	8	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	-256	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	487.260522027519	1	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	NA	False	NA	NA	NA	72491812	72510796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72491906_72492069_72492198_72492365_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797_72510470_72510568
54971	chr13	-	1433	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	14	-483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	235.944400230224	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTAACGGTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	34314323	34311213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311589_34311779_34312238_34312298_34312515_34312854_34312966_34313228_34313338_34314159
54972	chr16	-	2087	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232239.2	2319	4	234	-2	234	0	multi-exon	FALSE	canonical	3	250	junction_3	18.4932420089069	111	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTTGTTGGTCGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	92262797	92188840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92262720
54974	chr5	+	3286	4	Genic_Genomic	ENSMUSG00000086401.2	novel	2260	2	NA	NA	2865	675	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	97	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CGGTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110921679	110927801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_110921848_110922389_110923076_110923396_110923498_110925470
54975	chr12	-	3762	3	NNC	ENSMUSG00000046157.14	novel	3860	3	NA	NA	-1741	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	7.5	44	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGGCTGTGACCCAT	NA	False	NA	NA	False	NA	NA	NA	79056142	79008573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_79011948_79024534_79024716_79055935
54976	chr1	-	2556	16	ISM	ENSMUSG00000026565.19	ENSMUST00000111429.11	2679	17	56620	62	-10978	-31	3prime_fragment	FALSE	canonical	1	1	junction_15	6.6379381002102	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATTGCTTCATGGATTGG	1743	False	NA	NA	False	NA	NA	NA	165773558	165703087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165773470
54979	chr5	-	1825	14	NNC	ENSMUSG00000033294.12	novel	2075	15	NA	NA	-5	-170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	256.920036831392	1	75	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTGGTTTTTTAGTGTG	8905	False	NA	NA	False	NA	NA	NA	110801219	110796453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797663_110797781_110797937_110797999_110798200_110798313_110798781_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
54980	chr1	-	1765	11	FSM	ENSMUSG00000006299.14	ENSMUST00000006462.14	1817	11	48	4	-10	2	multi-exon	FALSE	canonical	3	1233	junction_8	50.6802722960325	2	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTGTCTGTGTGCATTT	NA	False	NA	NA	False	NA	NA	NA	74323849	74319002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
54981	chr9	+	2282	10	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	-281	1563	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	117.048053864984	1	104	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCTGCTAATGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	63523988	63549173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488_63548853_63549034
54982	chr11	-	1283	3	ISM	ENSMUSG00000020831.19	ENSMUST00000108576.10	576	6	866	-198	-34	0	intron_retention	FALSE	canonical	3	107	junction_1	72	16	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	70127764	70126031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70126295_70126521_70126627_70126849
54985	chr5	-	2674	10	NNC	ENSMUSG00000039753.17	novel	2814	11	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	237.13152052119	18	124	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCAATATCTTTTGTGT	8872	False	NA	NA	False	NA	NA	NA	43939448	43901965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_43902718_43908186_43908353_43915563_43916287_43917084_43917168_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
54986	chr1	-	1626	5	ISM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	7466	15	-7031	-15	3prime_fragment	FALSE	canonical	3	38	junction_2	18.6346451535842	212	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTGTAAAAACAAACCATC	NA	False	NA	NA	False	NA	NA	NA	170796230	170788141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548
54987	chr1	-	1260	8	ISM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	7	5506	7	1185	5prime_fragment	FALSE	canonical	3	19	junction_7	12.0999241016341	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGTACATGAATTGCTT	NA	False	NA	NA	False	NA	NA	NA	75168560	75163015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168467
54988	chr1	-	1108	2	ISM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	9267	23	3391	-23	3prime_fragment	FALSE	canonical	3	55	junction_1	0	13	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTTAATAAAGAAGGGACT	NA	False	NA	NA	False	NA	NA	NA	75159300	75157532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_75158576_75159235
54989	chr8	+	1470	1	NIC	ENSMUSG00000037214.13	novel	880	4	NA	NA	259	-291	mono-exon	FALSE	NA	NA	NA	NA	NA	7	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTCTTCTATAAGACACA	NA	False	NA	NA	False	NA	NA	NA	26649079	26650549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_26649100_26650500
54990	chr8	+	893	2	ISM	ENSMUSG00000037214.13	ENSMUST00000130231.2	880	4	2343	-156	1783	156	3prime_fragment	FALSE	canonical	3	203	junction_1	0	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTAAAATTGTAATTTTT	NA	False	NA	NA	False	NA	NA	NA	26650603	26652959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26650999_26652461
54991	chr11	+	790	2	Antisense	novelGene_ENSMUSG00000020719.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTTGCTTTATGTTATT	NA	False	NA	NA	False	NA	NA	NA	106672371	106673374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673297
54993	chr11	+	1158	11	NIC	ENSMUSG00000034427.18	novel	9340	64	NA	NA	6295	-3093	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	1.18743420870379	1	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTGCTCCGGAGACGAC	NA	False	NA	NA	False	NA	NA	NA	115755526	115767888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115755621_115757056_115757153_115757370_115757503_115760300_115760427_115761963_115762042_115762236_115762353_115762455_115762502_115762626_115762752_115764229_115764348_115764582_115764747_115767825
54994	chr19	-	1427	8	FSM	ENSMUSG00000024889.6	ENSMUST00000225476.2	1455	8	17	11	16	-7	multi-exon	FALSE	canonical	3	51	junction_4	109.573011722592	304	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAACATGGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	4675652	4672629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
54995	chr12	-	2786	1	Antisense	novelGene_ENSMUSG00000112943.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	76	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTGCTGGTGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	87529590	87526804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_87526800_87529600
54996	chr12	-	1762	1	Intergenic	novelGene_4441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCAGCAAGATGAGACT	NA	False	NA	NA	False	NA	NA	NA	87526704	87524942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_87524900_87526700
54997	chr18	-	3197	14	NNC	ENSMUSG00000052026.9	novel	3366	14	NA	NA	4615	-25	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	6.93417913214581	1	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATAAATCCCAAATGGCAT	NA	False	NA	NA	False	NA	NA	NA	61142663	61128476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61129904_61133493_61133662_61134363_61134465_61134641_61134742_61135194_61135327_61135397_61135479_61136312_61136438_61136558_61136663_61137460_61137596_61138783_61138923_61140446_61140682_61140787_61140920_61141020_61141169_61142493
54998	chr5	+	1098	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	212	-22	-212	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	3	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
54999	chrX	+	3915	1	FSM	ENSMUSG00000073062.4	ENSMUST00000101388.4	5619	1	1685	19	1685	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	24	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATAAACGTTAAGATAAAT	NA	False	NA	NA	False	NA	NA	NA	93769859	93773774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_93769900_93773800
55001	chr7	-	3036	6	NNC	ENSMUSG00000038930.12	novel	2595	7	NA	NA	25	228	intron_retention	TRUE	non_canonical	0	0	junction_1	22.3696222587687	1	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAATCCAAACTATTCTG	NA	False	NA	NA	False	NA	NA	NA	79973843	79966115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79966287_79966437_79966799_79967200_79967231_79968606_79970930_79973497_79973618_79973812
55002	chr10	-	3108	7	NNC	ENSMUSG00000020100.16	novel	5240	6	NA	NA	0	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	15.8263142336497	3	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCTTGGTTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	60588562	60547855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_60548234_60550361_60552270_60556639_60556803_60559542_60559770_60566348_60566432_60586164_60586464_60588512
55005	chr12	+	1671	14	ISM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	255	1704	3	-1704	5prime_fragment	FALSE	canonical	3	207	junction_4	25.9056092712751	230	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTACACCATTTCCCA	NA	False	NA	NA	False	NA	NA	NA	24548612	24606834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517
55006	chr8	+	3541	11	NIC	ENSMUSG00000036054.16	novel	4609	11	NA	NA	279	-1	combination_of_known_junctions	FALSE	canonical	3	90	junction_9	11.7456374880208	63	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCCGGCTCCTGTGCTGC	3533	False	NA	NA	False	NA	NA	NA	70689316	70715754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713240_70713880_70713968_70715520
55007	chr3	+	1217	11	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	-61	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	126.567333858306	1	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATATTGTGTTTACCTG	NA	False	NA	NA	False	NA	NA	NA	95466926	95494902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467035_95468538_95468592_95469790_95469881_95482861_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
55008	chr6	+	2382	1	FSM	ENSMUSG00000072704.7	ENSMUST00000100864.7	2842	1	410	50	29	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	35	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCAAAAGAATCCATTG	NA	False	NA	NA	False	NA	NA	NA	133082281	133084663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_133082300_133084700
55009	chr13	-	1412	10	FSM	ENSMUSG00000003062.14	ENSMUST00000197565.3	1391	10	-25	4	0	-1	multi-exon	FALSE	canonical	3	23	junction_9	324.011659598163	173	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGATTGTGTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	19579929	19541849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19575142_19575268_19579873
55011	chr13	-	2498	7	ISM	ENSMUSG00000014164.16	ENSMUST00000091583.6	6871	17	82944	3309	82944	-3309	3prime_fragment	FALSE	canonical	0	0	junction_5	1.89296944860009	29	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGGGTACAGCCTCA	NA	False	NA	NA	False	NA	NA	NA	58167298	58151350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_58153019_58157090_58157235_58158907_58159049_58161643_58161773_58164259_58164362_58166610_58166809_58167182
55012	chr10	+	2050	6	NNC	ENSMUSG00000004207.15	novel	2654	14	NA	NA	45	-5581	intron_retention	FALSE	canonical	1	1	junction_1	411.249316108854	17	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTGGGGTTAAATGATC	7035	False	NA	NA	False	NA	NA	NA	60113494	60132792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113567_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130889_60131725
55013	chr2	-	1619	9	FSM	ENSMUSG00000040591.19	ENSMUST00000102594.11	1977	9	-57	415	5	-1	multi-exon	TRUE	canonical	3	72	junction_5	19.7673974007708	302	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAATGAGTCTAAAGCCA	NA	False	NA	NA	False	NA	NA	NA	91275044	91108589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
55014	chr16	-	2717	12	FSM	ENSMUSG00000022498.17	ENSMUST00000038424.14	3095	12	367	11	270	-11	multi-exon	FALSE	canonical	3	63	junction_7	19.5329769897639	34	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAAATGAACTCGAATGT	8901	False	NA	NA	False	NA	NA	NA	10952147	10892785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_10893507_10897567_10897649_10902071_10902182_10902614_10902758_10905640_10906434_10909449_10909651_10911679_10911793_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946568_10952131
55015	chr10	+	2386	20	FSM	ENSMUSG00000020017.15	ENSMUST00000129421.8	5319	20	307	2626	272	12	multi-exon	FALSE	canonical	1	3	junction_2	3.06530942706548	36	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTTAAAACAATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	93324936	93352540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93325240_93325735_93325797_93325901_93325930_93326608_93326684_93326776_93326850_93326960_93327028_93327671_93327710_93328314_93328441_93330472_93330613_93332444_93332493_93333336_93333485_93334620_93334717_93334817_93334877_93336478_93336560_93339123_93339190_93339265_93339432_93343276_93343412_93349895_93350005_93350120_93350191_93352043
55016	chr12	-	3260	3	Fusion	ENSMUSG00000114139.2_ENSMUSG00000113670.2	novel	1400	3	NA	NA	-462	11	intron_retention	TRUE	canonical	0	0	junction_1	2.5	117	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	23010769	22879722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_22879789_23004061_23004839_23008352
55017	chr2	-	4221	1	Antisense	novelGene_ENSMUSG00000033705.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAATTCTGAACCACTCG	5264	False	NA	NA	False	NA	NA	NA	120534595	120530374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_120530400_120534600
55019	chr8	-	1348	9	NNC	ENSMUSG00000003814.9	novel	2184	9	NA	NA	-39	-242	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	430.078408548953	1	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTGTCTCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	85573498	85568720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85568945_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
55020	chr8	+	2429	19	NNC	ENSMUSG00000031787.9	novel	3777	20	NA	NA	6	1097	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	50.8544279242838	1	123	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCAGCCTCGGGGCTGCT	2225	False	NA	NA	False	NA	NA	NA	95809229	95825621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824032_95824151_95824247_95824393_95824582_95824660_95824733_95824809_95824946_95825064_95825281
55021	chr9	+	3781	17	NNC	ENSMUSG00000044037.16	novel	5056	27	NA	NA	1282	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	7.91532335094404	1	138	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTGCATGTGTGTTC	8338	False	NA	NA	False	NA	NA	NA	110718344	110729597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110718370_110718774_110718841_110719152_110719252_110719368_110719531_110719849_110719962_110720921_110721000_110721861_110721993_110723054_110723229_110723390_110723461_110723633_110723792_110724352_110724419_110724779_110724954_110725704_110725748_110726568_110726631_110726754_110726905_110727116_110727214_110727483
55023	chr7	-	4567	7	ISM	ENSMUSG00000030930.15	ENSMUST00000077472.10	5041	8	45711	66	7622	-66	3prime_fragment	FALSE	canonical	0	0	junction_3	1.69967317119759	8	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAATAATTAAAGATG	NA	False	NA	NA	False	NA	NA	NA	131872732	131837574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_131840194_131843145_131843294_131849592_131849750_131864411_131864569_131868385_131868533_131870647_131870988_131871733
55024	chr5	+	3684	11	FSM	ENSMUSG00000029528.20	ENSMUST00000067268.15	3706	11	22	0	-13	0	multi-exon	FALSE	canonical	3	245	junction_6	21.5722043379901	69	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATGTTATTTCTTGGGA	NA	False	NA	NA	False	NA	NA	NA	115644756	115694046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
55026	chr3	-	1041	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	19	7	-9	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	6485	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTAGAGTGTGGACTTT	NA	False	NA	NA	False	NA	NA	NA	130503074	130489567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
55027	chr7	+	1810	8	NIC	ENSMUSG00000041769.14	novel	1938	8	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	46	junction_4	223.507658636987	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCACTGCAGTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	138448326	138484785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474729_138474781_138475848_138476014_138478184_138478447_138483937
55028	chr1	-	1912	15	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	115	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAATATGCGAGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	59750645	59724157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729722_59731495_59731547_59735134_59735259_59737480_59737597_59740023_59740108_59741973_59742111_59743226_59743366_59743784_59743901_59744754_59744894_59745790_59745926_59746160_59746223_59748159_59748289_59749650_59749810_59750429
55029	chr8	+	605	1	Genic_Genomic	ENSMUSG00000004637.16	novel	NA	NA	NA	NA	162470	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGGAAAGTGGGTGACTG	NA	False	NA	NA	False	NA	NA	NA	115601376	115601981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_115601400_115602000
55030	chr4	+	2565	1	NIC	ENSMUSG00000028312.20	novel	5404	25	NA	NA	4	-5939	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCAGGACAAATACCCC	11	True	NA	NA	False	NA	NA	NA	52439272	52441837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_52439300_52441800
55032	chr17	-	2064	16	FSM	ENSMUSG00000063011.8	ENSMUST00000238120.2	2165	16	101	0	38	0	multi-exon	TRUE	canonical	3	34	junction_13	10.6111052937739	102	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6693	False	NA	NA	False	NA	NA	NA	25973250	25967586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105
55033	chr7	+	1084	8	FSM	ENSMUSG00000030512.14	ENSMUST00000032723.9	955	8	-129	0	77	0	multi-exon	FALSE	canonical	3	89	junction_5	1022.69418095299	447	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	65710162	65724328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
55034	chr7	+	1585	9	Antisense	novelGene_ENSMUSG00000003363.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCCACTACCGCCAGGA	NA	False	NA	NA	False	NA	NA	NA	27231438	27241205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_27231907_27231995_27232096_27233089_27233232_27235208_27235354_27237004_27237204_27238772_27238905_27238980_27239097_27240505_27240700_27241116
55035	chr18	+	3345	2	FSM	ENSMUSG00000049090.4	ENSMUST00000060223.4	3430	2	79	6	79	-6	multi-exon	FALSE	canonical	3	35	junction_1	0	36	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGACACACTTCTTTC	4333	False	NA	NA	False	NA	NA	NA	84106266	84115647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_84106499_84112534
55036	chr4	+	936	5	FSM	ENSMUSG00000028423.16	ENSMUST00000143798.2	1009	5	512	-439	512	0	multi-exon	FALSE	canonical	3	525	junction_4	108.297045204382	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	2031	False	NA	NA	False	NA	NA	NA	41003021	41012608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
55038	chr18	-	2705	11	ISM	ENSMUSG00000117679.2	ENSMUST00000236001.2	2258	12	-164	0	-114	0	intron_retention	FALSE	canonical	3	26	junction_10	13.6400146627487	44	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGATGAGTATATTGA	NA	False	NA	NA	False	NA	NA	NA	36812533	36804207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602
55039	chr3	-	3385	16	ISM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	18802	2	9	-2	3prime_fragment	FALSE	canonical	3	702	junction_5	42.7956384070464	206	25	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTAGTAGTCGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	107585074	107570437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357_107579453_107580751_107580855_107581323_107581425_107582326_107582471_107585035
55041	chr16	+	1889	6	ISM	ENSMUSG00000091712.3	ENSMUST00000165810.2	2337	16	29362	-741	29362	741	3prime_fragment	TRUE	canonical	0	0	junction_3	0.632455532033676	1	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTTTTTTGTTTTGTTT	6877	False	NA	NA	False	NA	NA	NA	4994334	5002539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_4994510_4996357_4996493_4998079_4998215_4998533_4998762_4999868_5000048_5001502
55042	chr1	+	1818	8	FSM	ENSMUSG00000026096.15	ENSMUST00000027265.10	1868	8	50	0	1	0	multi-exon	FALSE	canonical	3	122	junction_2	14.7537611946159	397	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGCCTTGTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	53352832	53365502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
55044	chr16	+	3065	16	Antisense	novelGene_ENSMUSG00000022788.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTAGAATTTAAAAGAAAAG	7449	False	NA	NA	False	NA	NA	NA	16239879	16322079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_16240683_16241775_16241921_16243630_16243770_16253802_16253931_16254396_16254489_16254872_16254905_16271855_16272029_16279457_16279604_16279863_16279924_16287567_16287709_16292092_16292250_16292880_16293023_16295284_16295376_16301948_16302464_16308288_16308473_16321962
55045	chr9	+	1955	7	NIC	ENSMUSG00000032469.13	novel	2261	8	NA	NA	-13	-164	combination_of_known_junctions	FALSE	canonical	2	18	junction_2	116.068945028375	2	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATTATCCTATTGGCTC	6393	False	NA	NA	False	NA	NA	NA	99457838	99466390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99458179_99458628_99458754_99461409_99461496_99462191_99462417_99464074_99464156_99464443_99464516_99465364
55046	chr17	+	1450	12	NNC	ENSMUSG00000038954.15	novel	1508	12	NA	NA	65	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	33.5581400010575	9	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGATTTTATGTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45088103	45430151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313943_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45359168_45359280_45430029
55047	chr5	-	2394	18	Antisense	novelGene_ENSMUSG00000118662.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGCAGCCATGGCAAC	NA	False	NA	NA	False	NA	NA	NA	124765507	124736844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_124737019_124737196_124737314_124737775_124737830_124740058_124740270_124741803_124741906_124745816_124745996_124746581_124746703_124748329_124748480_124750716_124750772_124753212_124753347_124754529_124754608_124757091_124757169_124758173_124758289_124761067_124761174_124762376_124762536_124763743_124763865_124763956_124764056_124765165
55048	chr19	-	3010	2	NNC	ENSMUSG00000092274.4	novel	3004	2	NA	NA	0	2	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	172	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGAATTGTCATGGCT	10001	False	NA	NA	False	NA	NA	NA	5895506	5892332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5894999_5895162
55049	chr2	+	1734	10	NIC	ENSMUSG00000027257.14	novel	1862	11	NA	NA	29	-10	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	17.8519286920123	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAAGTGTTGTGAGCGTC	4804	False	NA	NA	False	NA	NA	NA	91087211	91095013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91087272_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
55051	chr16	+	1395	5	ISM	ENSMUSG00000039200.17	ENSMUST00000230872.2	465	6	21535	-961	21535	961	3prime_fragment	FALSE	canonical	3	14	junction_4	36.9932426261878	48	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGAGTGGCATTTTTCA	NA	False	NA	NA	False	NA	NA	NA	10052204	10070303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_10052256_10054021_10054084_10055029_10055097_10065308_10065462_10069241
55052	chr2	+	937	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	-88	0	78	0	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	3676	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	25	False	NA	NA	False	NA	NA	NA	164404410	164410430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
55053	chr17	+	2568	11	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1759	-26	intron_retention	FALSE	canonical	3	25	junction_5	13.5606047062806	1	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATTAAATGTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	57184261	57195878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
55054	chr7	+	3948	21	NNC	ENSMUSG00000053046.17	novel	1986	19	NA	NA	-25392	-8	intron_retention	FALSE	canonical	1	1	junction_20	2.71799558498538	13	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTCCATAAAGACACATGA	1661	False	NA	NA	False	NA	NA	NA	141478095	141557970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141478190_141479168_141479321_141535273_141535369_141536717_141536804_141538130_141538272_141538585_141538703_141539170_141539205_141539446_141539516_141539622_141539770_141541158_141541191_141541487_141541653_141541850_141541949_141542022_141542174_141545976_141546038_141546848_141547057_141547451_141547501_141550625_141550750_141552114_141552296_141552369_141552460_141552656_141552752_141556211
55055	chr16	+	1419	8	NIC	ENSMUSG00000000884.18	novel	1485	8	NA	NA	105	-31	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	128.226044029078	26	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATATTTGACAATAAATTT	NA	False	NA	NA	False	NA	NA	NA	18317794	18383257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18317891_18357141_18357247_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
55056	chr2	-	1713	9	NNC	ENSMUSG00000045624.16	novel	3396	14	NA	NA	2109	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	173.621310255971	1	80	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAGGTTATTCAAGAAA	9086	False	NA	NA	False	NA	NA	NA	140010375	139990746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_139990835_139996713_139996859_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140009764_140009824
55058	chrX	-	1208	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	3	-63	3	-1	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	1331	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGAGGCTTGAGTGCTT	589	False	NA	NA	False	NA	NA	NA	7765215	7760758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
55059	chr2	-	648	2	Genic_Genomic	ENSMUSG00000081406.5	novel	750	1	NA	NA	32	42	multi-exon	FALSE	canonical	0	0	junction_1	0	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75022134	75021374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_75021716_75021827
55060	chr7	+	1439	13	NNC	ENSMUSG00000066232.5	novel	3784	21	NA	NA	-371	-2221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	363.441956239997	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTGTTTGAACCTGTTA	NA	False	NA	NA	False	NA	NA	NA	109628901	109646355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109629067_109630833_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640094_109641211_109641323_109641992_109642093_109643615_109643679_109643861_109643942_109645368_109645459_109645884_109646038_109646234
55062	chr6	+	1793	12	Antisense	novelGene_ENSMUSG00000030082.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGGCGAGGCGGGGCCGG	NA	False	NA	NA	False	NA	NA	NA	88481847	88495800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_88482272_88483122_88483201_88483716_88483914_88484152_88484354_88485545_88485716_88489098_88489240_88489479_88489588_88491294_88491423_88492321_88492402_88492483_88492543_88495345_88495420_88495667
55063	chr4	-	607	1	Genic_Genomic	ENSMUSG00000029053.17	novel	NA	NA	NA	NA	7607	7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTTCCTGTTATTATTT	562	False	NA	NA	False	NA	NA	NA	155345185	155344578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_155344600_155345200
55064	chr4	+	1724	8	NIC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	34	-28	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	32.5739347406756	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGATATTATGCATTTCAC	76	False	NA	NA	False	NA	NA	NA	103171042	103223612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103188501_103188577_103210698_103210849_103223169
55065	chr11	-	2058	12	NIC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	-518	1	combination_of_known_junctions	FALSE	canonical	3	113	junction_11	1345.10671179491	263	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGGCTGTAGTGTCT	6768	False	NA	NA	False	NA	NA	NA	102299290	102293969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298603
55066	chr16	-	1263	5	NIC	ENSMUSG00000003528.16	novel	1666	9	NA	NA	128	0	intron_retention	FALSE	canonical	3	1859	junction_1	41.4306649717332	5	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	NA	False	NA	NA	NA	17745079	17743086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744605_17745017
55067	chr4	+	1766	9	NIC	ENSMUSG00000028671.17	novel	1537	10	NA	NA	123	0	intron_retention	FALSE	canonical	2	7	junction_3	50.9238095098943	373	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATTCTCACAGATGGC	6153	False	NA	NA	False	NA	NA	NA	135692628	135695489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_135692768_135692876_135692993_135693313_135693428_135693564_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
55068	chr5	+	1967	18	NNC	ENSMUSG00000029148.16	novel	2203	18	NA	NA	347	-1	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	118.598126338211	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCATCTTGTGTTGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	31401118	31408906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31401177_31401257_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
55069	chr3	-	871	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	77	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4822.18006300055	9	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCGTTTGCTTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	86049932	86045255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045441_86045820_86045888_86046346_86046556_86048545_86048734_86049004_86049109_86049814
55071	chr5	+	1217	10	NNC	ENSMUSG00000029486.14	novel	3556	10	NA	NA	7	-2294	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	297.593682728649	1891	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGCTCCTCATGTTTT	NA	False	NA	NA	False	NA	NA	NA	96358009	96412274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_96358053_96361645_96361770_96362203_96362320_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
55072	chr1	-	1488	11	FSM	ENSMUSG00000026034.18	ENSMUST00000151338.8	1538	11	46	4	46	-4	multi-exon	FALSE	canonical	3	9	junction_6	69.2961759406679	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATAAAGGTCTATAGCTT	NA	False	NA	NA	False	NA	NA	NA	58463179	58451162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
55073	chr6	-	3114	16	NNC	ENSMUSG00000005069.13	novel	3139	16	NA	NA	-8	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	48.0259189281047	1	140	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTATGAAGAATAAACTG	NA	False	NA	NA	False	NA	NA	NA	124392004	124373807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376880_124377046_124377191_124380074_124380195_124380770_124380867_124381091_124381203_124381588_124381680_124382125_124382232_124390234_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
55074	chr12	+	1282	7	NNC	ENSMUSG00000020585.5	novel	1773	7	NA	NA	363	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	374.047419750788	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTACCATTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	8972026	8988719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8972295_8981627_8981667_8984718_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
55075	chr1	+	1788	5	FSM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	-187	396	12	4	multi-exon	FALSE	canonical	3	21	junction_2	42.0200844834943	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTCCAATTGAAGTTAT	NA	False	NA	NA	False	NA	NA	NA	160898348	160913898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477_160911021_160913557
55076	chr2	-	2014	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_10	14.3488675511345	124	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	59712944	59682707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
55077	chr9	-	2010	17	NNC	ENSMUSG00000032030.17	novel	5945	20	NA	NA	95	-5758	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_16	125.326012363755	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTATTTTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	53581219	53534081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53580896_53580957_53581150
55078	chr9	-	2550	15	NIC	ENSMUSG00000032312.8	novel	2390	15	NA	NA	32	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_12	48.2386181986413	135	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCCTCGGCGCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	57560722	57533928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57559114_57559276_57559849_57559986_57560559
55079	chr4	+	1284	9	NNC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	166	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	222.788261304316	5	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTAGGTGGTCATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	152262756	152356313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152262798_152291220_152291339_152302192_152302350_152314243_152314347_152322136_152322224_152334275_152334369_152337605_152337723_152345302_152345488_152355930
55080	chr11	-	2656	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	10	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	199.681969363508	1	141	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCGCATGAGCTGTGTT	7779	False	NA	NA	False	NA	NA	NA	113456572	113135688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138695_113141289_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452948_113456501
55081	chr3	+	1464	13	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	1	-404	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	138.101613153343	1	64	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95466989	95492705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467035_95467121_95467259_95469758_95469936_95473931_95473996_95474994_95475032_95478212_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450
55082	chr11	+	2241	13	NNC	ENSMUSG00000034708.13	novel	834	7	NA	NA	50	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	233.54490408104	1	137	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAATAGTATCTGATTTG	4384	False	NA	NA	False	NA	NA	NA	102321393	102327629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102321529_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327073_102327160
55083	chr9	+	1796	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	27	11	10	-11	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	396	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGACCCGCTTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	108867679	108886781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
55084	chr3	+	2114	12	Antisense	novelGene_ENSMUSG00000055436.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAAGCCCCCAAAATGAG	NA	False	NA	NA	False	NA	NA	NA	157717266	157729647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157717839_157717944_157718086_157718416_157718534_157719588_157719679_157721958_157722090_157723445_157723529_157724948_157725077_157727012_157727063_157727596_157727686_157728469_157728579_157728869_157729050_157729223
55085	chr10	-	4308	21	ISM	ENSMUSG00000039089.16	ENSMUST00000040219.13	4572	22	21680	7	21680	-7	3prime_fragment	TRUE	canonical	3	18	junction_17	5.32799211711129	23	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGCAGATTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	26228272	26150375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_26152162_26155514_26155578_26155835_26156312_26158677_26158758_26168538_26168692_26178550_26178654_26179520_26179636_26189744_26189856_26191389_26191476_26194274_26194352_26203584_26203737_26206072_26206165_26207717_26207854_26212130_26212236_26213665_26213758_26215116_26215202_26216805_26216939_26218405_26218566_26220074_26220150_26220509_26220622_26228156
55086	chr8	+	1499	3	FSM	ENSMUSG00000071078.7	ENSMUST00000212851.2	1507	3	11	-3	11	3	multi-exon	FALSE	canonical	3	67	junction_2	269.5	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCATTTGTGGTACTCT	472	False	NA	NA	False	NA	NA	NA	70584007	70586402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70584250_70584567_70584659_70585236
55089	chr4	-	1437	4	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.117073382335	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41094688_41094839_41095144_41095272_41098001
55091	chr3	-	1854	9	NNC	ENSMUSG00000027531.17	novel	4185	9	NA	NA	-8	-186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	128.456218222397	1	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAGTTTCAAGGCAGTTA	NA	False	NA	NA	False	NA	NA	NA	10396440	10379199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391238_10393458_10393539_10394002_10394069_10396381
55092	chr2	+	1480	1	NIC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	275	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	84875973	84877453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84876000_84877500
55093	chr19	-	1992	2	Fusion	ENSMUSG00000117920.2_ENSMUSG00000118335.2	novel	596	2	NA	NA	-1957	-598	multi-exon	FALSE	canonical	3	9	junction_1	0	44	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTACAGTGTACTTACATA	NA	False	NA	NA	False	NA	NA	NA	38378508	38373611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_38375486_38378390
55094	chr15	-	1206	4	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	385	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	795.14205579185	1	48	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGACCCTGCCAGCGTTT	NA	False	NA	NA	False	NA	NA	NA	83056408	83037701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038607_83046432_83046506_83050275_83050408_83056312
55096	chr2	+	1543	8	NNC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	6	-29	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	49.4871659305393	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	24852440	24862144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_24852638_24853034_24853169_24855568_24855667_24856513_24856687_24858874_24858967_24859061_24859128_24859517_24859691_24861534
55097	chr6	-	1694	11	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-15	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2678.78505296711	1	81	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCTTACTATGAATTGT	NA	False	NA	NA	False	NA	NA	NA	51446842	51437925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51440390_51440474_51441095_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
55099	chr6	+	1602	4	Antisense	novelGene_ENSMUSG00000068335.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCCAGCCGCGCCACG	1644	False	NA	NA	False	NA	NA	NA	83007914	83009980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_83009040_83009209_83009352_83009507_83009610_83009747
55101	chr1	+	1339	10	NNC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	0	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	133.654428182681	2	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAGCCGAGGCCCTAATG	8185	False	NA	NA	False	NA	NA	NA	134333732	134339447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644_134339089_134339341
55102	chr2	-	1826	14	NNC	ENSMUSG00000027487.12	novel	1970	14	NA	NA	7	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	25.6141140826047	3	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGGCTTCCTTGTCTACT	5687	False	NA	NA	False	NA	NA	NA	154214632	154177306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154177538_154184220_154184362_154187785_154187845_154190615_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
55103	chr2	-	2786	1	NIC	ENSMUSG00000039195.5	novel	680	2	NA	NA	-35	-11	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACCACTGCCCCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	32271909	32269123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32269100_32271900
55104	chr5	+	1445	1	FSM	ENSMUSG00000070473.5	ENSMUST00000094245.4	1259	1	-189	3	-189	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	439	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTCGCTGGAGCTTCCT	4852	False	NA	NA	False	NA	NA	NA	135014878	135016323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135014900_135016300
55106	chr12	-	1828	15	NNC	ENSMUSG00000021039.10	novel	2232	14	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	264.400988373836	1	95	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATTCTGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87519047	87496684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87496890_87497291_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
55107	chr9	-	1205	11	NIC	ENSMUSG00000032314.15	novel	1392	12	NA	NA	27	-13	combination_of_known_splicesites	FALSE	canonical	3	20	junction_10	494.167593028924	25	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATCCTTTAAGATTACT	NA	False	NA	NA	False	NA	NA	NA	55419500	55361804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55419314
55110	chr7	+	1682	5	NIC	ENSMUSG00000075701.11	novel	1191	6	NA	NA	13	0	intron_retention	FALSE	canonical	3	410	junction_4	20.4511613362176	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTCTCTGGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	65729447	65739153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
55111	chr9	+	2019	1	NIC	ENSMUSG00000032383.8	novel	3305	4	NA	NA	21	-4353	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAGGAATTTTTTTTTTA	1595	False	NA	NA	False	NA	NA	NA	65967533	65969552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65967500_65969600
55112	chrX	-	2144	5	FSM	ENSMUSG00000035062.14	ENSMUST00000044382.7	2219	5	81	-6	-20	0	multi-exon	FALSE	canonical	3	32	junction_1	3.76662979332984	94	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAACTGAGTGCATTCTG	962	False	NA	NA	False	NA	NA	NA	94702034	94682798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_94684258_94685769_94685933_94686913_94687087_94688912_94689085_94701857
55113	chr3	-	1482	5	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	-1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.925225100195	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTATTTTAACAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	90398332	90395687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90396537_90396627_90396901_90397460_90397580_90397854_90397902_90398138
55115	chr3	+	1602	1	Genic_Genomic	ENSMUSG00000049288.5	novel	NA	NA	NA	NA	7262	993	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCATCAGATCTTGTTACAG	4265	False	NA	NA	False	NA	NA	NA	96532878	96534480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_96532900_96534500
55117	chr17	+	2286	13	NNC	ENSMUSG00000024180.15	novel	3464	13	NA	NA	139	-78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	117.427519015869	1	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACCTCTTCAGCTAGGA	NA	False	NA	NA	False	NA	NA	NA	26332455	26341238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26332542_26335732_26335908_26335992_26336201_26336384_26336513_26336712_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339534_26339660_26340513_26340631_26340911
55118	chr12	-	2971	5	NIC	ENSMUSG00000021182.17	novel	7542	30	NA	NA	163	-3	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	44.9471912359382	113	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGAGCCCTGGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	100888710	100877784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_100880065_100882836_100883130_100884587_100884657_100887785_100887855_100888450
55119	chr11	+	1618	8	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	-52	-822	at_least_one_novel_splicesite	FALSE	canonical	1	26	junction_6	1007.15805459658	4	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGGATAAACTGTGTG	NA	False	NA	NA	False	NA	NA	NA	97206681	97219924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217907_97218911_97219086_97219307
55121	chr4	+	2503	19	NNC	ENSMUSG00000029056.14	novel	2706	20	NA	NA	41	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	45.6255897983187	2	71	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACACATGTGCTCATCTG	NA	False	NA	NA	False	NA	NA	NA	155048630	155065379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060689_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063411_155063483_155063948_155064050_155064182_155064252_155064951
55122	chr11	-	2552	4	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44237	-10	intron_retention	FALSE	canonical	3	7	junction_2	286.479008344804	448	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTCTGAGCTGTTGGGG	NA	False	NA	NA	False	NA	NA	NA	87922596	87870360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87872397_87874697_87874837_87892657_87892839_87922400
55123	chr6	+	2488	12	NIC	ENSMUSG00000029833.18	novel	4042	19	NA	NA	16188	-130	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	189.72010702154	1	101	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACGTGAATGGAAGCAGA	7832	False	NA	NA	False	NA	NA	NA	37908343	37943101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_37908436_37920347_37920466_37922455_37922725_37926156_37926334_37928386_37928561_37930428_37930565_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
55124	chr6	+	2260	19	FSM	ENSMUSG00000030263.14	ENSMUST00000032396.13	2319	19	53	6	11	0	multi-exon	FALSE	canonical	3	14	junction_2	13.9594872380979	116	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	NA	False	NA	NA	NA	145067517	145120654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145067833_145083185_145083334_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
55125	chr18	+	2539	4	NIC	ENSMUSG00000024273.9	novel	1146	5	NA	NA	-1	90	intron_retention	FALSE	canonical	3	181	junction_1	11.0252236056942	45	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACTTCAGGCACTTC	339	False	NA	NA	False	NA	NA	NA	24603905	24610444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_24604038_24604118_24606207_24608581_24608782_24610325
55126	chr15	-	1859	6	NIC	ENSMUSG00000022552.17	novel	1669	6	NA	NA	-89	0	intron_retention	FALSE	canonical	3	126	junction_5	16.4	2	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTTCTGTTCTTGG	8385	False	NA	NA	False	NA	NA	NA	76235039	76231240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285_76232428_76232500_76232636_76234254
55128	chr5	+	1966	7	NNC	ENSMUSG00000053388.11	novel	1456	6	NA	NA	-1387	-7	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	2.86744175568088	54	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTAGCCCTGTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	135380761	135396852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135380916_135382136_135382549_135387708_135387805_135392581_135392813_135392903_135392927_135395394_135395520_135395927
55131	chr15	+	1454	11	NNC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	13.076696830622	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	NA	NA	NA	85763533	85781593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776826_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
55132	chr10	-	2432	13	NNC	ENSMUSG00000036099.17	novel	4479	12	NA	NA	-10	1137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	25.1841826461681	1	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGGCCTTGATTGTTCTT	3453	False	NA	NA	False	NA	NA	NA	93871621	93806040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93806567_93809696_93809905_93810306_93810396_93816169_93816370_93820023_93820356_93821256_93821287_93826001_93826151_93829379_93829517_93832699_93832976_93836212_93836383_93839854_93839945_93842821_93842957_93871531
55133	chr6	+	1137	13	NNC	ENSMUSG00000030303.16	novel	3395	13	NA	NA	134497	29264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	7	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCCGGCGCACACGAAGA	NA	False	NA	NA	False	NA	NA	NA	148083410	148113520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_148083468_148084542_148084709_148089532_148089629_148090983_148091083_148092327_148092383_148096691_148096788_148097494_148097597_148100852_148100897_148102914_148102985_148103993_148104044_148106277_148106383_148108030_148108179_148113471
55135	chr13	-	1726	8	Intergenic	novelGene_1343	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGAGGCCAGGGCCCTA	5041	False	NA	NA	False	NA	NA	NA	36721567	36301857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_36301985_36320331_36320400_36388491_36389123_36416102_36416264_36430344_36430476_36525917_36526077_36594057_36594212_36721272
55137	chr8	-	786	4	ISM	ENSMUSG00000031819.14	ENSMUST00000180417.8	1863	7	8389	3	7579	-3	3prime_fragment	FALSE	canonical	3	17	junction_3	580.110908936099	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGCCTTTTGTAATCCT	NA	False	NA	NA	False	NA	NA	NA	121386923	121384592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_121384988_121385266_121385362_121385743_121385814_121386697
55138	chrX	+	1577	3	FSM	ENSMUSG00000015342.7	ENSMUST00000015486.7	5076	3	160	3339	160	-3339	multi-exon	FALSE	canonical	3	33	junction_2	9.5	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGTTTGTTTCGCATTT	NA	False	NA	NA	False	NA	NA	NA	9139154	9176150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_9139474_9148235_9148499_9175155
55139	chr9	+	2666	5	NIC	ENSMUSG00000032567.17	novel	2349	6	NA	NA	-13	0	intron_retention	FALSE	canonical	3	19	junction_1	18.0138835346518	50	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTTATTTATATG	NA	False	NA	NA	False	NA	NA	NA	105272577	105282666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_105273054_105273743_105275058_105278674_105278886_105280594_105280791_105282197
55140	chr11	+	2925	5	ISM	ENSMUSG00000020134.14	ENSMUST00000101477.2	3703	6	5153	3	5153	-3	3prime_fragment	FALSE	canonical	3	114	junction_3	10.1734949746879	73	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCTATGCGAATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	21090621	21100320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_21090694_21092555_21092658_21096914_21097113_21097257_21097447_21097956
55141	chr17	+	2036	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	217	61	217	-61	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	1	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATAGTTTATGTTATTAT	NA	False	NA	NA	False	NA	NA	NA	80435116	80492469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
55142	chr3	+	1343	9	NNC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	16	70	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	926.228879651245	1	76	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGTGTGTGAGTTGAA	4959	False	NA	NA	False	NA	NA	NA	138148888	138161074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153705_138156688_138156880_138157004_138157270_138159521_138159639_138160428_138160568_138160845
55143	chr11	-	2340	12	NNC	ENSMUSG00000006930.16	novel	3316	12	NA	NA	-704	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	224.370229754306	9	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTGCCCTGTCTCAGTT	-12	True	NA	NA	False	NA	NA	NA	100247658	100238157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100238687_100242035_100242128_100242243_100242379_100242668_100242732_100243010_100243142_100244369_100244437_100244513_100244614_100244782_100244962_100245071_100245189_100245497_100245575_100246515_100247034_100247326
55144	chr12	-	1518	8	NNC	ENSMUSG00000020634.13	novel	2696	7	NA	NA	-42	368	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	579.385635208291	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACTAATCTATATACACA	NA	False	NA	NA	False	NA	NA	NA	4957481	4930021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4930772_4933822_4933982_4935720_4935859_4939817_4939854_4941314_4941422_4944537_4944680_4952219_4952273_4957348
55145	chr10	+	1819	3	NIC	ENSMUSG00000035242.16	novel	520	3	NA	NA	-396	0	intron_retention	FALSE	canonical	3	6566	junction_2	302	11	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	80663149	80665119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80664468_80664544_80664631_80664704
55148	chr5	-	2420	16	NNC	ENSMUSG00000041740.17	novel	3112	17	NA	NA	7	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	406.413724615146	9	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATTGACACTCAACTTG	NA	False	NA	NA	False	NA	NA	NA	115410944	115379849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115380121_115380451_115380611_115380692_115380751_115382079_115382181_115383907_115384064_115384938_115385041_115385227_115385346_115386640_115386775_115386973_115387230_115387455_115387582_115388028_115388190_115389124_115389262_115389335_115389521_115393408_115393500_115395032_115395218_115410764
55152	chr6	+	2151	1	Intergenic	novelGene_4138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCTGCAAAATCTATTCT	NA	False	NA	NA	False	NA	NA	NA	35126744	35128895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_35126700_35128900
55153	chr1	+	2226	11	FSM	ENSMUSG00000041809.6	ENSMUST00000038447.6	2146	11	-80	0	-18	0	multi-exon	FALSE	canonical	3	9	junction_5	4.06939798987516	41	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGTGCCTTATTTGGAG	NA	False	NA	NA	False	NA	NA	NA	21021831	21061065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_21022021_21025558_21025781_21030353_21030642_21031376_21031527_21037547_21037741_21042998_21043220_21045122_21045264_21048866_21049081_21049633_21049782_21059591_21059827_21060840
55155	chrX	-	1086	11	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	18	194	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	423.775884165204	7	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGAAAATGTAAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	72830485	72823081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826276_72826323_72830380
55156	chr4	-	1981	16	Antisense	novelGene_ENSMUSG00000028405.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGTCCTCCGGACGCTCC	NA	False	NA	NA	False	NA	NA	NA	40188224	40143465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40143541_40163717_40163845_40164607_40164784_40167054_40167190_40175662_40175733_40175839_40176016_40176495_40176634_40177776_40177949_40178970_40179069_40180169_40180287_40181380_40181541_40182801_40182939_40183566_40183646_40184896_40185025_40186302_40186435_40188163
55157	chr13	+	2075	3	FSM	ENSMUSG00000063200.5	ENSMUST00000223188.2	751	3	-1395	71	1017	-3	multi-exon	FALSE	canonical	3	1402	junction_2	86.5	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGGTCACATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	43553127	43555467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_43554895_43554975_43555054_43555237
55158	chr13	+	1759	3	FSM	ENSMUSG00000078941.10	ENSMUST00000084721.8	1222	3	-1	-536	-1	536	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	3380	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGACTTCTTT	NA	False	NA	NA	False	NA	NA	NA	100787849	100793103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_100787954_100790698_100790792_100791541
55159	chr3	+	3555	4	Antisense	novelGene_ENSMUSG00000050144.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGGAACCGGAAACTGAGA	NA	False	NA	NA	False	NA	NA	NA	88317806	88332425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_88320203_88323292_88323423_88327807_88328444_88332032
55162	chrX	+	1111	5	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	5	2	intron_retention	FALSE	canonical	3	48	junction_2	563.839737868838	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGGGCTCCTGTGTCTAT	5593	False	NA	NA	False	NA	NA	NA	72830794	72834434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72830913_72832440_72832560_72832685_72832760_72833405_72834031_72834259
55164	chr18	+	2297	4	NNC	ENSMUSG00000102918.2	novel	4687	4	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	99.533355659743	28	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	37939452	37974926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_37939631_37958073_37958133_37966317_37966407_37972955
55166	chr9	-	2702	1	Intergenic	novelGene_993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	86	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAACATTCCTGTTCCTGC	NA	False	NA	NA	False	NA	NA	NA	19007661	19004959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_19005000_19007700
55167	chr12	-	1942	4	NNC	ENSMUSG00000021276.11	novel	445	4	NA	NA	3	3	intron_retention	FALSE	canonical	0	0	junction_2	2.35702260395516	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	8437	False	NA	NA	False	NA	NA	NA	110850491	110844025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110844549_110845130_110846249_110849847_110849981_110850323
55169	chr2	+	2213	11	NNC	ENSMUSG00000005506.17	novel	4432	13	NA	NA	2894	-1916	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	203.920793446868	1	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGGTTGATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	90831817	90847919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90831856_90833555_90833691_90834155_90834236_90835045_90835198_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
55170	chr17	+	1850	6	Antisense	novelGene_ENSMUSG00000024206.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCCACTGGAGCTAGAG	7820	False	NA	NA	False	NA	NA	NA	57088524	57094746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_57089347_57090604_57090764_57091301_57091767_57092296_57092417_57093612_57093728_57094577
55173	chr10	-	2888	5	FSM	ENSMUSG00000020029.7	ENSMUST00000020217.7	3210	5	302	20	302	-20	multi-exon	FALSE	canonical	3	479	junction_2	92.7937902017156	267	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAATGGAAACAACCTC	NA	False	NA	NA	False	NA	NA	NA	95399706	95382888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_95385353_95385637_95385723_95387310_95387356_95388347_95388459_95399523
55174	chr13	+	1104	5	NIC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	458	-3735	combination_of_known_splicesites	FALSE	canonical	2	55	junction_1	508.437496158574	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGACTGGATTATTGTA	NA	False	NA	NA	False	NA	NA	NA	92491691	92521826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_92491853_92494434_92494541_92502172_92502300_92504692_92504809_92521232
55175	chr8	-	2363	5	NNC	ENSMUSG00000050052.13	novel	373	4	NA	NA	-36	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	137.914828789366	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGAGATTCTTTAGTGTG	4489	False	NA	NA	False	NA	NA	NA	14025068	14002015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_14003934_14004020_14004136_14005719_14005818_14024540_14024730_14025025
55177	chr10	-	583	1	Antisense	novelGene_ENSMUSG00000110841.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTTGCCTCATTGCGA	NA	False	NA	NA	False	NA	NA	NA	45752160	45751577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_45751600_45752200
55178	chr12	-	2014	12	NNC	ENSMUSG00000020664.11	novel	2544	14	NA	NA	1747	-337	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	391.854881217377	1	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTATACCAGGGAATGA	NA	False	NA	NA	False	NA	NA	NA	31399666	31381612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384768_31385469_31385656_31390278_31390381_31390862_31391005_31391376_31391478_31392742_31392857_31394805_31394897_31399591
55179	chr1	-	3101	20	NNC	ENSMUSG00000026509.16	novel	3225	21	NA	NA	122	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	13.0719297068332	33	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACACAGTCGCACCATGC	NA	False	NA	NA	False	NA	NA	NA	182344967	182294831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_182295801_182297743_182297803_182298243_182298361_182300085_182300165_182300488_182300558_182301446_182301512_182304815_182304874_182306112_182306179_182307270_182307308_182309011_182309224_182311750_182311938_182314108_182314270_182315279_182315355_182316558_182316645_182317529_182317614_182318431_182318601_182319626_182319761_182320316_182320436_182339771_182339842_182344682
55181	chr16	-	1241	10	NNC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	160.3651697044	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	4831397	4826593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4827117_4827767_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
55182	chr15	-	2353	14	NNC	ENSMUSG00000013611.15	novel	2696	14	NA	NA	-4561	9	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	6.43492688565058	37	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAGTTTGCTAGTGAAA	NA	False	NA	NA	False	NA	NA	NA	36560279	36504548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36505617_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36560155
55183	chr7	-	2633	19	NNC	ENSMUSG00000007783.11	novel	2793	19	NA	NA	14	-11	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_17	22.3543985784111	2	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTGCAGTATCCACTGT	2754	False	NA	NA	False	NA	NA	NA	44624185	44608807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622515_44623150_44623305_44624018
55185	chr1	+	1736	5	FSM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	165	9	-18	5	multi-exon	FALSE	canonical	3	79	junction_2	18.1710621593786	379	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCCAATTGAAGTTATT	NA	False	NA	NA	False	NA	NA	NA	160898501	160913899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477_160911021_160913557
55186	chr7	-	3302	3	Antisense	novelGene_ENSMUSG00000043831.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	135	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTTCACCGCCACCGCG	NA	False	NA	NA	False	NA	NA	NA	66878208	66872369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_66872785_66873354_66873645_66875611
55187	chr3	+	1224	7	NNC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	3900	73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	800.416436751659	1	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTGAGTTGAACAT	8912	False	NA	NA	False	NA	NA	NA	138152841	138161077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138152986_138153612_138153705_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
55188	chr11	-	1495	8	NIC	ENSMUSG00000020528.15	novel	1771	11	NA	NA	5665	-15	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	94.469949870694	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTTTTTTAAACCTCT	5957	False	NA	NA	False	NA	NA	NA	61647173	61620494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61621129_61622250_61622398_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020
55189	chr8	-	2853	8	NNC	ENSMUSG00000031549.17	novel	2452	10	NA	NA	-3667	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	2.25876975726313	23	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCTAGCTCAAAGTCTT	6597	False	NA	NA	False	NA	NA	NA	25048280	25021907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_25023969_25025157_25025307_25030609_25030662_25036522_25036641_25037155_25037259_25040770_25040904_25043736_25043857_25048163
55190	chrX	-	829	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-35	-44	35	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCATTGGCTTTCATTA	NA	False	NA	NA	False	NA	NA	NA	68649895	68649066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68649100_68649900
55191	chr11	-	839	5	NNC	ENSMUSG00000018697.15	novel	1992	9	NA	NA	26	-42822	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	236.898184881185	12	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACCAGATGTTTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	84404322	84400552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_84400683_84401024_84401244_84402308_84402405_84402966_84403156_84404117
55192	chr17	+	1559	4	FSM	ENSMUSG00000024038.18	ENSMUST00000046288.16	1582	4	18	5	-14	0	multi-exon	FALSE	canonical	3	77	junction_3	1707.19269237216	172	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACTATGTGGTTATTTC	NA	False	NA	NA	False	NA	NA	NA	31739109	31750300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31739236_31740542_31740667_31746283_31747376_31750083
55193	chr11	+	1557	10	NNC	ENSMUSG00000018932.10	novel	2096	11	NA	NA	0	446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	201.553472977113	1	66	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATCAGGGACATCTCTA	NA	False	NA	NA	False	NA	NA	NA	60822879	60843093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60823098_60832705_60832759_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835612_60837441_60837598_60837936_60838015_60840746_60840891_60842589
55194	chr3	+	1659	7	NNC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-7	19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	174.521647813547	6	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACAGTTTTAAAATAAACG	7065	False	NA	NA	False	NA	NA	NA	108291187	108295514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108291280_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
55195	chr12	+	1893	5	NNC	ENSMUSG00000021023.15	novel	3122	7	NA	NA	137	-5158	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	50.7216669678748	1	74	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTATGGAAGGGACAGG	NA	False	NA	NA	False	NA	NA	NA	55350207	55424047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55351670_55353123_55353172_55355528_55355655_55384944_55385053_55423898
55197	chr3	-	834	7	NNC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	1510	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	325.302252613712	2	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGATCTGCTCCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	88836782	88830958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88831221_88832600_88832715_88833590_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702
55198	chr11	+	1179	9	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	935.138818237699	1	45	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACACATTGTGTGACTCTG	NA	False	NA	NA	False	NA	NA	NA	9068552	9086163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085288_9085960
55199	chr9	-	2455	9	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	-8	-17	intron_retention	FALSE	canonical	3	11	junction_4	18.9369843164111	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGCCGGCGAGCTAAGCG	NA	False	NA	NA	False	NA	NA	NA	108474787	108456077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108456508_108456914_108457039_108457214_108458104_108459040_108459204_108459280_108459379_108460045_108460143_108460840_108461032_108474097_108474180_108474406
55200	chrX	+	1548	6	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-1531	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1093.47270656382	9	99	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTGCTTTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	74148023	74153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74148067_74149259_74149379_74149883_74149988_74150777_74150851_74151784_74151911_74152301
55201	chr11	+	568	1	Intergenic	novelGene_2442	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTATGTATGAATGTATG	1430	False	NA	NA	False	NA	NA	NA	87739014	87739582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_87739000_87739600
55202	chr5	+	1694	6	NNC	ENSMUSG00000029681.13	novel	907	3	NA	NA	409	-3	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	100.312711058968	125	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGACAGCTTCTTTCT	9240	False	NA	NA	False	NA	NA	NA	135197707	135210706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135197963_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
55203	chr5	+	1869	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	-27	13	-27	-13	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	245	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAACTCAGAAGTTAAGT	5571	False	NA	NA	False	NA	NA	NA	138185719	138192167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
55205	chrX	+	1152	6	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	-42	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1129.71777006472	2	45	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52076971	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091147_52097529_52097566_52109199_52109277_52109943
55206	chr7	-	1687	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	16	0	16	0	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	144	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTTCTGTTCTCCAG	NA	False	NA	NA	False	NA	NA	NA	109351470	109335040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
55208	chr13	-	1883	11	Antisense	novelGene_ENSMUSG00000021322.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	167	8	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTCAAACTTTCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	21208424	21120543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_21120621_21125978_21126075_21163632_21163716_21178799_21178836_21179587_21179665_21184067_21184237_21186822_21186878_21187058_21187133_21189204_21189298_21197281_21197357_21207376
55209	chr5	+	717	3	ISM	ENSMUSG00000029177.10	ENSMUST00000199320.5	369	4	-29	659	-7	-659	5prime_fragment	FALSE	canonical	3	1270	junction_1	225.5	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGAGGGCGGACTCCCCT	9217	False	NA	NA	False	NA	NA	NA	30824271	30830749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_30824458_30829807_30829915_30830325
55210	chr5	-	3386	11	NIC	ENSMUSG00000041298.16	novel	6157	11	NA	NA	14	1351	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	4.01123422402632	19	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGGTGTTTGGATGTGGT	2104	False	NA	NA	False	NA	NA	NA	148865796	148811141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_148813147_148815667_148815795_148825688_148825824_148828438_148828566_148829319_148829479_148830492_148830599_148830958_148831087_148841376_148841540_148855405_148855567_148858046_148858223_148865697
55211	chr13	+	597	1	Genic_Genomic	ENSMUSG00000021699.18	novel	NA	NA	NA	NA	-545	-75405	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGGCAGTTTGGTAAAGT	NA	False	NA	NA	False	NA	NA	NA	109822144	109822741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_109822100_109822700
55212	chr9	-	3158	1	Genic_Genomic	ENSMUSG00000097777.8	novel	NA	NA	NA	NA	1440	-9127	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGCCGTCGCTCGGAGGA	5244	False	NA	NA	False	NA	NA	NA	95840006	95836848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_95836800_95840000
55213	chr10	-	1170	6	FSM	ENSMUSG00000000296.9	ENSMUST00000213639.2	827	6	-66	-277	-8	-3	multi-exon	FALSE	canonical	3	30	junction_2	219.239230066154	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATGGCTGGATCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31321859	31208375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_31208966_31214180_31214242_31222606_31222709_31233867_31234017_31255210_31255327_31321707
55214	chr4	-	1219	4	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.117073382335	2	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAAGCATGTGCCACCA	2	True	NA	NA	False	NA	NA	NA	41098180	41092613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093449_41094760_41094839_41095144_41095272_41098001
55215	chr10	-	1535	7	FSM	ENSMUSG00000003923.15	ENSMUST00000121685.8	899	7	-48	-588	-48	522	multi-exon	FALSE	canonical	1	9	junction_6	143.827056641726	28	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATGTATTTTAAGATGAA	NA	False	NA	NA	False	NA	NA	NA	71073556	71063753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073287
55216	chr7	+	1116	3	NNC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	933.5	10	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115692606	115704445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_115692761_115698674_115698759_115703567
55217	chr14	+	1487	3	ISM	ENSMUSG00000035960.15	ENSMUST00000128395.2	1036	4	-280	0	27	0	intron_retention	FALSE	canonical	3	1054	junction_2	53	306	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	216	False	NA	NA	False	NA	NA	NA	51162461	51164596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_51162782_51162973_51163162_51163617
55218	chr12	+	2403	13	NNC	ENSMUSG00000017843.15	novel	2790	13	NA	NA	57	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	387.216159485457	1	87	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGTGTATTTTCCTAT	NA	False	NA	NA	False	NA	NA	NA	110413797	110538123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110413820_110414405_110414472_110432282_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110519168_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
55220	chr19	-	2879	9	NNC	ENSMUSG00000024667.13	novel	935	6	NA	NA	8431	2073	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	135	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCCGAGTCCTAAAAGAT	1047	False	NA	NA	False	NA	NA	NA	10524669	10509155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10509363_10509493_10509561_10510183_10510281_10510654_10510774_10512562_10512879_10514158_10514273_10516975_10517151_10518042_10518211_10523053
55222	chr5	+	2027	1	Antisense	novelGene_ENSMUSG00000055725.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCCATAGATTTAAACC	NA	False	NA	NA	False	NA	NA	NA	97249113	97251140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_97249100_97251100
55223	chr2	+	1845	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	35	1488	25	594	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTTGTTCGTTATGGTC	NA	False	NA	NA	False	NA	NA	NA	118943322	118966283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
55224	chr14	-	1125	10	Antisense	novelGene_ENSMUSG00000021748.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGCTGCCGAATGACAAC	NA	False	NA	NA	False	NA	NA	NA	14303466	14296824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_14296880_14296952_14297008_14298240_14298355_14298447_14298505_14298595_14298632_14299324_14299610_14299950_14300063_14300334_14300427_14302916_14303059_14303289
55225	chr4	+	2309	4	NIC	ENSMUSG00000028461.13	novel	865	5	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	315	junction_3	11.7284080571728	3	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTACTGGGTGTTCCTCT	-14	True	NA	NA	False	NA	NA	NA	43493373	43495915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_43493537_43493607_43495256_43495341_43495433_43495508
55226	chr11	-	1438	10	Antisense	novelGene_ENSMUSG00000020612.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGCTCGGCGACGGCTCC	NA	False	NA	NA	False	NA	NA	NA	109558621	109541794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_109541895_109544599_109544786_109550822_109550994_109551858_109551951_109552111_109552174_109553099_109553149_109553774_109553942_109556640_109556811_109557467_109557553_109558265
55227	chr7	-	1580	8	NIC	ENSMUSG00000025486.18	novel	1598	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	100.424405522213	907	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCCTGTCTCTTTGGGAT	NA	False	NA	NA	False	NA	NA	NA	140461781	140443578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140443997_140444887_140445098_140445578_140445740_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
55228	chr2	-	2338	13	NIC	ENSMUSG00000075415.14	novel	1859	15	NA	NA	-18	206	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	43.973161006333	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAACCAAAAGAGGCCCAGG	4801	False	NA	NA	False	NA	NA	NA	31031987	30922499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30995253_30995370_31031790
55231	chr12	-	889	2	Genic_Genomic	ENSMUSG00000060499.8	novel	1023	1	NA	NA	-5	-33	multi-exon	FALSE	canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAGAGAATTAAACATGAA	NA	False	NA	NA	False	NA	NA	NA	66331180	66330185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_66330762_66330867
55232	chr7	-	1133	1	NIC	ENSMUSG00000060591.10	novel	655	2	NA	NA	10	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	27	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCTGGCTGTGACTCAC	NA	False	NA	NA	False	NA	NA	NA	140535890	140534757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140534800_140535900
55233	chr11	-	851	6	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	2	-62	combination_of_known_splicesites	FALSE	canonical	1	11	junction_2	1662.07901135897	1	13	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAGCTGATAGGATGCT	9656	False	NA	NA	False	NA	NA	NA	106679318	106676030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106676123_106676220_106676363_106677051_106677186_106677273_106677371_106677734_106677901_106679098
55234	chr18	+	1299	5	NNC	ENSMUSG00000037058.17	novel	1475	4	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1284.69889468311	1	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4752	False	NA	NA	False	NA	NA	NA	35731781	35750239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251_35749312_35749375
55236	chr13	+	4253	1	Antisense	novelGene_ENSMUSG00000100410.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	73	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTCTGTGGGATTCTTTG	3690	False	NA	NA	False	NA	NA	NA	99209867	99214120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_99209900_99214100
55237	chr9	+	2465	5	NIC	ENSMUSG00000033392.17	novel	4112	34	NA	NA	61830	-25669	intron_retention	FALSE	canonical	3	90	junction_3	39.3382765255419	3	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGAAGGTAAATCTTTGA	NA	False	NA	NA	False	NA	NA	NA	113703497	113721535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_113705419_113709009_113709255_113710755_113710820_113719025_113719190_113721464
55238	chr3	-	2193	3	FSM	ENSMUSG00000043300.3	ENSMUST00000061826.3	2028	3	78	-243	78	243	multi-exon	FALSE	canonical	3	41	junction_2	5	68	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACCATGGAGTTGGGAG	NA	False	NA	NA	False	NA	NA	NA	69506215	69481247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_69483294_69486658_69486725_69506134
55239	chr14	-	1790	5	Intergenic	novelGene_650	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCTCCCTAGGCCTTG	NA	False	NA	NA	False	NA	NA	NA	122616388	122514876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_122514995_122548654_122548841_122608650_122608841_122613292_122613394_122615193
55245	chr9	+	2346	6	NNC	ENSMUSG00000041064.15	novel	3395	13	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	65.1447618769153	3	26	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTAACTGTGCCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	65494492	65503242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65494581_65494865_65495551_65500576_65500632_65500738_65500885_65501668_65501861_65502062
55246	chr7	+	1956	2	Genic_Genomic	ENSMUSG00000041117.9	novel	4809	1	NA	NA	1319	-1486	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCAGCTGATCCAAGAGC	5995	False	NA	NA	False	NA	NA	NA	16727951	16729955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_16729666_16729713
55247	chr11	-	1278	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-2533	-13	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	46.4494946749214	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTACTCTTAAGTATTCT	NA	False	NA	NA	False	NA	NA	NA	66933886	66928879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66933744
55248	chr17	+	213	1	ISM	ENSMUSG00000037649.11	ENSMUST00000235910.2	711	2	16	12555	6	-12362	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCGAATCCTGCCTTCGA	NA	False	NA	NA	False	NA	NA	NA	34341811	34342024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34341800_34342000
55249	chr9	+	2652	24	NNC	ENSMUSG00000025237.17	novel	2709	24	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_19	15.1991194650933	57	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATCACTGTGGTCTGAC	NA	False	NA	NA	False	NA	NA	NA	59524656	59557568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59524692_59525750_59525991_59529631_59529827_59530405_59530484_59531200_59531296_59531655_59531717_59531946_59532038_59532605_59532673_59535801_59535952_59537901_59538113_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59548306_59548380_59548990_59549094_59556112_59556193_59556572_59556637_59556801_59556887_59557206
55250	chr7	-	1795	6	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	-20	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	757.859512046923	1	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGGTGTGTGAAAGCAGA	NA	False	NA	NA	False	NA	NA	NA	99002341	98994636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98994923_98995187_98995630_98996131_98996365_98996472_98996572_98998009_98998663_99002259
55251	chr6	-	1189	6	NNC	ENSMUSG00000023456.17	novel	1552	6	NA	NA	0	-127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	911.671651418426	1	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCTTTGTGGGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	124791121	124787681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789376_124789448_124789752_124789877_124790970
55253	chr18	+	2521	5	NNC	ENSMUSG00000104063.2	novel	4713	4	NA	NA	-2110	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	110.953537573166	4	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTTCTTCTGAAAGTGT	7994	False	NA	NA	False	NA	NA	NA	37882542	37974910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_37882659_37886944_37887247_37958073_37958133_37966317_37966407_37972955
55254	chr10	-	1063	2	NIC	ENSMUSG00000020219.8	novel	1225	3	NA	NA	-27	227	intron_retention	FALSE	canonical	3	3643	junction_1	0	61	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGGTGCACACCTGTCT	5605	False	NA	NA	False	NA	NA	NA	80736646	80735510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80736385_80736457
55256	chr2	-	1441	10	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60315	8	60315	-8	3prime_fragment	FALSE	canonical	3	83	junction_9	15.8449275288675	309	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGTTGCTTCCGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	121956355	121950596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750_121955872_121956199
55257	chr15	+	3746	1	FSM	ENSMUSG00000092868.3	ENSMUST00000175127.3	82	1	-2715	-949	-2715	949	mono-exon	FALSE	NA	NA	NA	NA	NA	32	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGCTGCTAAGCATTT	1096	False	NA	NA	False	NA	NA	NA	80821524	80825270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80821500_80825300
55259	chr3	+	2062	13	FSM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	-26	14	-26	-14	multi-exon	FALSE	canonical	3	12	junction_12	7.78888096369861	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATTTTTAGAAGGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	159545347	159644286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
55260	chr15	-	1091	8	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	898	195	75	-191	internal_fragment	FALSE	canonical	3	23824	junction_3	2722.36687986234	1	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGACCTACCTGGGCTGG	4416	False	NA	NA	False	NA	NA	NA	79966709	79962186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590
55261	chr9	+	3832	18	FSM	ENSMUSG00000034275.19	ENSMUST00000133213.3	4239	18	17	390	17	-390	multi-exon	FALSE	canonical	2	4	junction_12	6.44647914955176	17	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAGTTCCCGCACTGGCT	NA	False	NA	NA	False	NA	NA	NA	27210540	27245669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_27210814_27220699_27220898_27222862_27223010_27228650_27228803_27229104_27229223_27230501_27230644_27230819_27230966_27233468_27233612_27233912_27234054_27234139_27234257_27234504_27234656_27235472_27235585_27238141_27238318_27239775_27240003_27240834_27240920_27242946_27243109_27243797_27243844_27244373
55262	chr10	+	1708	6	NNC	ENSMUSG00000020284.17	novel	1818	7	NA	NA	-21	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.657449106199	161	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCCCAGGCCCACTT	NA	False	NA	NA	False	NA	NA	NA	77814466	77821272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_77814630_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
55263	chr4	-	1710	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105859.8	1801	5	89	2	89	-1	multi-exon	FALSE	canonical	3	9	junction_3	5.49431524395898	25	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTTTTTTGTCACCTTG	5818	False	NA	NA	False	NA	NA	NA	135125412	135096888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135125193
55264	chr2	-	1691	7	ISM	ENSMUSG00000027488.13	ENSMUST00000109728.8	2131	8	4193	19	4074	-19	3prime_fragment	FALSE	canonical	3	101	junction_6	14.9851778619927	150	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAATGGCAGCCTGGCAT	NA	False	NA	NA	False	NA	NA	NA	154245826	154218251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154218829_154218926_154219115_154219927_154220125_154222593_154222725_154222830_154223039_154225699_154225905_154245641
55265	chr17	+	1413	1	ISM	ENSMUSG00000036918.17	ENSMUST00000041110.12	4614	20	97445	26	1478	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	26	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCTTGGAGGGGGACAAG	NA	False	NA	NA	False	NA	NA	NA	87687758	87689171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_87687800_87689200
55266	chr7	+	557	6	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6896.10961049779	24	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCCTGTGTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	12656244	12660611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12656951_12659434_12659529_12659663_12659793_12660322_12660422_12660498
55267	chr8	-	1672	4	NNC	ENSMUSG00000014837.16	novel	3313	7	NA	NA	5797	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.5426385841741	11	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	1561	False	NA	NA	False	NA	NA	NA	106009885	106007040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106007699_106007939_106008777_106009618_106009717_106009806
55268	chr7	+	1632	2	FSM	ENSMUSG00000055200.8	ENSMUST00000068641.8	1329	2	-303	0	-303	0	multi-exon	FALSE	canonical	3	104	junction_1	0	388	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAATTGTAATTAAATCT	NA	False	NA	NA	False	NA	NA	NA	27172889	27176789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27173297_27175564
55269	chr9	-	2789	15	Antisense	novelGene_ENSMUSG00000111030.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	110	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCCGCCCCCACCCGGCC	2563	False	NA	NA	False	NA	NA	NA	44548687	44516158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_44516222_44518242_44518333_44518417_44518890_44524124_44524188_44525507_44525612_44534913_44535044_44535769_44535917_44537682_44537778_44538932_44539056_44539932_44540066_44541319_44541435_44542676_44542741_44545386_44545490_44546977_44547163_44547785
55270	chr11	+	2216	3	ISM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	-3	2506	-3	1356	5prime_fragment	FALSE	canonical	3	106	junction_2	5.5	78	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCCATCTACCTAGGGAA	NA	False	NA	NA	False	NA	NA	NA	97489333	97511213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97489494_97505749_97505855_97509262
55271	chr16	+	2767	15	FSM	ENSMUSG00000022817.16	ENSMUST00000115028.11	3282	15	319	196	307	-3	multi-exon	FALSE	canonical	3	194	junction_1	15.8688823983111	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGGTGTAGATCTGATT	NA	False	NA	NA	False	NA	NA	NA	33650353	33769512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_33650401_33665355_33665442_33685817_33686023_33696171_33696422_33705322_33705492_33719610_33719773_33720879_33720976_33723163_33723254_33730834_33730970_33740154_33740585_33760859_33761083_33764473_33764575_33766860_33766981_33768084_33768252_33769026
55272	chr8	+	2588	6	NIC	ENSMUSG00000031860.18	novel	1560	8	NA	NA	9	-6	intron_retention	FALSE	canonical	3	9	junction_2	10.870142593361	8	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTCCAGTGTTTTCA	2253	False	NA	NA	False	NA	NA	NA	70285320	70324936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70285502_70311729_70311804_70317473_70319254_70322678_70322833_70323227_70323335_70324644
55273	chr11	-	2557	11	FSM	ENSMUSG00000018566.15	ENSMUST00000018710.13	2524	11	-38	5	1	-5	multi-exon	FALSE	canonical	3	12	junction_2	3.57910603363466	38	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGATGAGTGTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	69839013	69833373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69834399_69834884_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
55274	chr7	-	798	4	NNC	ENSMUSG00000052296.8	novel	3862	24	NA	NA	7620	-18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	152.874676341985	78	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAGATAGCAGAACATT	NA	False	NA	NA	False	NA	NA	NA	4635542	4634511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_4634896_4634941_4635244_4635339_4635397_4635487
55275	chr15	-	2084	19	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	-7	-1	intron_retention	FALSE	canonical	3	70	junction_7	13.724358808023	65	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACAGTCTGGTCCCTGAC	NA	False	NA	NA	False	NA	NA	NA	89080658	89069020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
55276	chr2	+	2840	1	NIC	ENSMUSG00000035437.16	novel	4967	26	NA	NA	47070	-9	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAACAGCATTGCTTCAT	1342	False	NA	NA	False	NA	NA	NA	37453600	37456440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_37453600_37456400
55280	chr7	+	1990	1	Antisense	novelGene_ENSMUSG00000038650.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCACATGCCGCCAGCAG	NA	False	NA	NA	False	NA	NA	NA	140742103	140744093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_140742100_140744100
55281	chrX	+	2172	9	FSM	ENSMUSG00000031145.16	ENSMUST00000033485.14	2301	9	114	15	-98	-10	multi-exon	FALSE	canonical	3	64	junction_3	5.54526825320471	83	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACTTAAACATTATTTTT	NA	False	NA	NA	False	NA	NA	NA	7523612	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7523740_7524859_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
55283	chr12	-	1247	5	FSM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	-20	14	-20	-14	multi-exon	FALSE	canonical	3	180	junction_2	18.0277563773199	896	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATTATTCTCAT	8827	False	NA	NA	False	NA	NA	NA	112905764	112897924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_112898671_112901975_112902214_112902414_112902480_112902898_112902943_112905610
55285	chr7	+	1432	6	ISM	ENSMUSG00000030435.17	ENSMUST00000207926.2	2412	8	2330	0	2330	0	3prime_fragment	FALSE	canonical	3	1559	junction_1	131.464063530685	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	4163	False	NA	NA	False	NA	NA	NA	5073358	5082932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
55286	chr2	-	2265	20	FSM	ENSMUSG00000027378.17	ENSMUST00000028857.14	2260	20	-9	4	-9	0	multi-exon	TRUE	canonical	3	19	junction_11	16.3928570350886	52	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGTTATATCTAAATT	2825	False	NA	NA	False	NA	NA	NA	127630783	127582655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608042_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
55287	chr4	+	1557	1	FSM	ENSMUSG00000073775.5	ENSMUST00000102738.4	1629	1	72	0	72	0	mono-exon	FALSE	NA	NA	NA	NA	NA	152	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCTCTTGATGTA	NA	False	NA	NA	False	NA	NA	NA	108705053	108706610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108705100_108706600
55288	chr2	+	1510	10	NIC	ENSMUSG00000027593.16	novel	1802	10	NA	NA	-3	-15	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	57.8369355266262	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATTGGATCCAAATATGC	NA	False	NA	NA	False	NA	NA	NA	154633012	154709149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_154633152_154662926_154663010_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
55289	chr12	-	1055	3	FSM	ENSMUSG00000011158.9	ENSMUST00000222247.2	687	3	196	-564	196	564	multi-exon	FALSE	canonical	3	100	junction_2	19.5	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCACTCCAGTAGGTCCCT	NA	False	NA	NA	False	NA	NA	NA	112963820	112950766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_112951713_112956683_112956765_112963792
55291	chr12	-	1057	8	ISM	ENSMUSG00000011158.9	ENSMUST00000011302.9	2615	18	34909	-35	-3281	35	3prime_fragment	FALSE	canonical	3	119	junction_7	22.7371852223782	40	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGTAGCTGGGTCTGGAT	2	True	NA	NA	False	NA	NA	NA	112929415	112923669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927866_112929348
55294	chr1	-	923	7	ISM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	25	11127	-3	-11104	5prime_fragment	FALSE	canonical	3	38	junction_5	7.73879117749593	14	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACTTATAATAAAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	53226770	53208862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
55295	chr11	-	1084	1	ISM	ENSMUSG00000000276.12	ENSMUST00000107894.8	8347	12	30582	6	24480	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTTAAAAAGTATGGTTG	7141	False	NA	NA	False	NA	NA	NA	88927094	88926010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_88926000_88927100
55296	chr7	-	2048	13	NIC	ENSMUSG00000078671.12	novel	9085	39	NA	NA	-16141	7444	combination_of_known_junctions	FALSE	canonical	2	3	junction_10	11.9408263253986	1	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGAAACTTTCTGATG	NA	False	NA	NA	False	NA	NA	NA	73169458	73140010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_73140418_73141082_73141173_73143172_73143390_73147454_73147580_73149341_73149521_73149686_73149732_73150682_73150784_73151656_73151883_73153128_73153263_73154735_73154877_73163837_73163900_73165473_73165561_73169224
55297	chr1	+	1149	1	ISM	ENSMUSG00000067336.7	ENSMUST00000087435.7	12899	13	109649	4817	21572	-4817	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCCCTATAGATGGTTGT	NA	False	NA	NA	False	NA	NA	NA	59912207	59913356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_59912200_59913400
55300	chr4	-	1329	3	FSM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	-44	4	-44	-4	multi-exon	FALSE	canonical	3	159	junction_2	16.5	913	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGCCAAATGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	108264202	108257590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108258195_108260397_108260660_108263739
55301	chr4	+	2037	1	ISM	ENSMUSG00000046447.4	ENSMUST00000050918.4	4444	2	2664	1109	2664	-1109	mono-exon	FALSE	NA	NA	NA	NA	NA	50	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTATGACTCAGACATC	8408	False	NA	NA	False	NA	NA	NA	138184288	138186325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_138184300_138186300
55302	chr4	+	846	1	ISM	ENSMUSG00000046447.4	ENSMUST00000050918.4	4444	2	4949	15	4949	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCTCTTAAATATACTATA	NA	False	NA	NA	False	NA	NA	NA	138186573	138187419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_138186600_138187400
55305	chr15	-	1318	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	24	-3	24	3	multi-exon	FALSE	canonical	3	236	junction_1	15.2525407719501	821	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGACTTTAGTAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	75793385	75788322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
55306	chr6	-	2340	10	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	5	22469	5	-22469	5prime_fragment	TRUE	canonical	1	1	junction_2	8.78129324821299	17	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCAGGTAGGTAGACTCT	NA	False	NA	NA	False	NA	NA	NA	87699778	87675043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87675942_87677280_87677466_87684223_87684377_87689127_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
55307	chr12	-	2098	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	37	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	39.1648935768871	1	100	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGTCCTGTTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	4283901	4263502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4264631_4265258_4265438_4266540_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283757
55308	chr5	-	1562	7	NIC	ENSMUSG00000029507.17	novel	1868	7	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	62	junction_4	232.058481613771	798	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTCTTTGCCTATTTTCC	NA	False	NA	NA	False	NA	NA	NA	110928481	110921535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928427
55309	chr11	+	1232	5	FSM	ENSMUSG00000020812.19	ENSMUST00000239226.2	1257	5	23	2	-10	1	multi-exon	FALSE	canonical	3	112	junction_4	28.7347785792757	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	116562523	116566622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
55310	chr15	+	2759	12	FSM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	68	0	68	0	multi-exon	TRUE	canonical	3	37	junction_1	32.5360575565374	109	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	NA	False	NA	NA	NA	76555914	76579119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76555963_76573527_76573695_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
55312	chr19	-	2558	15	FSM	ENSMUSG00000024867.15	ENSMUST00000025800.15	2573	15	14	1	14	-1	multi-exon	FALSE	canonical	3	28	junction_9	5.473498303048	71	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGGTCATACATTGATT	NA	False	NA	NA	False	NA	NA	NA	24533222	24272158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_24272919_24281395_24281511_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
55313	chrX	-	1472	14	Antisense	novelGene_ENSMUSG00000025287.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	60	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGACTGAATCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	154080504	154045540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_154045669_154052652_154052748_154054945_154054988_154055962_154056137_154056385_154056429_154064604_154064690_154065045_154065149_154069282_154069361_154076903_154076973_154078158_154078269_154078415_154078534_154079295_154079407_154079574_154079726_154080339
55314	chr12	+	2337	12	NNC	ENSMUSG00000007411.17	novel	2807	18	NA	NA	-24	1	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_5	138.180681813509	146	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGCACTGTCTCCT	7255	False	NA	NA	False	NA	NA	NA	111590918	111622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595443_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
55315	chr6	-	736	2	FSM	ENSMUSG00000079523.9	ENSMUST00000144337.2	433	2	0	-303	0	1	multi-exon	FALSE	canonical	3	27215	junction_1	0	181	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGCGTGGTCTGAATT	NA	False	NA	NA	False	NA	NA	NA	72935382	72934334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72935008_72935319
55316	chr6	-	286	1	Antisense	novelGene_ENSMUSG00000032712.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCATGGAAACCAAACCTAG	NA	False	NA	NA	False	NA	NA	NA	149213200	149212914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_149212900_149213200
55317	chr7	+	1045	10	NNC	ENSMUSG00000053898.13	novel	1267	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	224.337543298783	45	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28524773	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28524838_28525298_28525504_28525609_28525675_28529290_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
55318	chr3	-	1694	9	Antisense	novelGene_ENSMUSG00000104803.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCATCAGAGACAGAGCTT	NA	False	NA	NA	False	NA	NA	NA	115722722	115681842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_115681926_115682087_115682244_115686354_115686484_115693341_115693451_115708686_115708809_115718859_115719359_115720343_115720448_115722155_115722404_115722478
55319	chr2	+	2261	4	FSM	ENSMUSG00000027654.3	ENSMUST00000029183.3	2266	4	0	5	0	-5	multi-exon	FALSE	canonical	3	282	junction_3	16.3571255285137	106	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTATTTGTGTGATTCTTT	406	False	NA	NA	False	NA	NA	NA	158610012	158628552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_158610508_158621764_158621933_158625052_158625178_158627079
55320	chrX	-	2056	3	ISM	ENSMUSG00000031431.14	ENSMUST00000112996.9	1552	4	2097	-723	2097	-2	3prime_fragment	FALSE	canonical	3	61	junction_2	107.5	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAATAAACTTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	139499311	139440287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_139441857_139442853_139442906_139498876
55321	chr10	-	2206	11	NNC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	66.1570857882963	1	117	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	367	False	NA	NA	False	NA	NA	NA	41685626	41594836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605325_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
55322	chr8	-	358	1	Genic_Genomic	ENSMUSG00000031489.16	novel	NA	NA	NA	NA	-234	-21257	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTGAGTTAAAGATACTT	NA	False	NA	NA	False	NA	NA	NA	27740878	27740520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_27740500_27740900
55323	chr8	-	2369	4	NIC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	342	-25	combination_of_known_junctions	FALSE	canonical	3	24	junction_3	42.4813684650891	454	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTAATAAATATTATTGA	NA	False	NA	NA	False	NA	NA	NA	27719274	27715828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27716498_27716753_27716822_27717284_27718779_27719136
55324	chrX	-	2752	1	Intergenic	novelGene_4095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATATTAAACTACTCT	NA	False	NA	NA	False	NA	NA	NA	151106677	151103925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_151103900_151106700
55325	chr11	-	733	8	ISM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	28	1765	12	-1236	5prime_fragment	FALSE	canonical	3	274	junction_7	98.3983988587171	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTGCAGAACATTCTCAAG	NA	False	NA	NA	False	NA	NA	NA	100331887	100321943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
55326	chr9	-	2461	6	NNC	ENSMUSG00000097211.3	novel	1022	2	NA	NA	46089	31829	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	98	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGATGCTGGCTAGCTC	265	False	NA	NA	False	NA	NA	NA	72271060	72237187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_72237236_72238147_72238463_72238579_72238714_72242326_72242391_72267567_72267624_72269216
55327	chrX	-	2281	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	521	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	NA	False	NA	NA	NA	17117545	16998287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
55328	chr11	-	1772	5	ISM	ENSMUSG00000020883.19	ENSMUST00000103143.10	8601	15	54017	6149	4468	2386	3prime_fragment	FALSE	canonical	3	150	junction_2	2.9474565306379	1	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTACCATCAGGGGAC	7	True	NA	NA	False	NA	NA	NA	97986421	97979530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958
55329	chr14	+	984	5	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-24	1292	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3263.86017623304	5	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCTGCAGTTTCAAGGC	NA	False	NA	NA	False	NA	NA	NA	63359938	63380604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63380048
55330	chr4	+	2380	2	ISM	ENSMUSG00000028414.18	ENSMUST00000061771.9	3370	9	14873	23615	14873	-23131	internal_fragment	FALSE	canonical	3	37	junction_1	0	5	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCACATAGCTTAGTTCT	NA	False	NA	NA	False	NA	NA	NA	53734877	53739656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_53735128_53737526
55331	chr11	-	1606	13	NNC	ENSMUSG00000018362.15	novel	1843	10	NA	NA	5	-68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1528.16188378573	1	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGTGGAATTTCGTAC	9762	False	NA	NA	False	NA	NA	NA	106890271	106879522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879616_106879676_106879806_106880149_106880300_106881014_106881198_106881464_106881573_106881627_106881699_106881894_106882159_106882238_106882334_106882740_106882924_106883471_106883500_106887334_106887473_106888063_106888141_106890184
55333	chr16	+	1552	11	NNC	ENSMUSG00000004460.18	novel	1628	11	NA	NA	36	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	319.452359515468	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGAAGGTACTTTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	22676651	22691128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420_22690592_22690899
55335	chr6	+	2318	3	ISM	ENSMUSG00000030276.20	ENSMUST00000203925.2	2517	9	9572	-18	-1876	-3	intron_retention	FALSE	canonical	3	20	junction_2	2	1	72	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAAGTAAAGTTCTCTG	3560	False	NA	NA	False	NA	NA	NA	113384290	113391541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_113384381_113385865_113386302_113389749
55337	chr8	-	2108	5	NIC	ENSMUSG00000005150.17	novel	1561	7	NA	NA	3	2	intron_retention	FALSE	canonical	3	115	junction_1	6.10327780786685	2	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTCTTTACCAATCTTC	NA	False	NA	NA	False	NA	NA	NA	85807329	85801678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
55338	chr9	+	1761	13	NNC	ENSMUSG00000025232.9	novel	1996	14	NA	NA	184	-13	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	476.537657367064	1	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTTCTCTAATGAGTTT	NA	False	NA	NA	False	NA	NA	NA	59447006	59472379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468396_59469225_59469310_59470149_59470334_59470506_59470598_59471165_59471271_59472103
55339	chr14	+	1896	8	ISM	ENSMUSG00000006527.17	ENSMUST00000227303.2	2960	19	11874	19718	11874	521	internal_fragment	FALSE	canonical	3	82	junction_1	9.9693407556388	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTATTATCTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	30499904	30520584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30499950_30505899_30506147_30506657_30506747_30507770_30507873_30509413_30509565_30512690_30512774_30518282_30518410_30519532
55340	chr14	-	1963	8	FSM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	102	-33	102	-6	multi-exon	FALSE	canonical	3	137	junction_3	15.9910689359494	135	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGGAAGAAGTAAGTGGT	1990	False	NA	NA	False	NA	NA	NA	70680628	70676202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390
55341	chr2	-	1146	3	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	463	136	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	152185919	152179341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152180174_152185076_152185248_152185776
55342	chr9	-	891	4	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	71	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7344.10604196015	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCTGTGTTGGTCAATG	9179	False	NA	NA	False	NA	NA	NA	78386927	78385738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386752_78386865
55346	chr10	+	1392	15	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	761.957873520845	1	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	NA	False	NA	NA	NA	111309155	111332745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111321323_111321425_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
55347	chr6	-	3233	21	ISM	ENSMUSG00000038600.13	ENSMUST00000114908.5	3307	22	12494	1	130	-1	3prime_fragment	FALSE	canonical	2	4	junction_15	2.50199920063936	30	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTAAGATGTCGTTATT	NA	False	NA	NA	False	NA	NA	NA	38073990	38025418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_38026019_38027400_38027573_38028378_38028497_38029944_38030053_38031489_38031592_38035659_38035877_38037904_38038024_38044671_38044766_38048783_38048942_38051056_38051197_38053620_38053772_38055680_38055894_38058965_38059060_38059854_38059938_38062903_38063031_38064864_38064960_38065547_38065674_38069335_38069431_38069694_38069774_38070872_38071007_38073782
55348	chrX	-	2421	3	FSM	ENSMUSG00000035427.19	ENSMUST00000113969.10	2403	3	-13	-5	-13	5	multi-exon	FALSE	canonical	3	26	junction_1	2.5	63	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTCTTTGCTCA	NA	False	NA	NA	False	NA	NA	NA	85299838	85293854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_85296089_85298945_85299028_85299733
55349	chr17	+	4682	30	FSM	ENSMUSG00000040852.7	ENSMUST00000047206.7	6882	30	46	2154	18	-2154	multi-exon	FALSE	canonical	1	1	junction_17	2.89449845123218	11	31	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATTGTGTCTTAGACAAA	NA	False	NA	NA	False	NA	NA	NA	84819368	84927412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_84819393_84829123_84829254_84854890_84854954_84864799_84864950_84866917_84867002_84867515_84867598_84871245_84871426_84873398_84874364_84877303_84877380_84878469_84878565_84879095_84879241_84882358_84882496_84882594_84882706_84883144_84883232_84884585_84884745_84890892_84890974_84893724_84893905_84896812_84896922_84898187_84898301_84898964_84899145_84903635_84903734_84905325_84905504_84906562_84906719_84908112_84908211_84914248_84914391_84918184_84918331_84919065_84919196_84923604_84923692_84925359_84925495_84927051
55352	chr8	-	1227	6	NNC	ENSMUSG00000031796.8	novel	1295	6	NA	NA	34	-1	intron_retention	FALSE	canonical	0	0	junction_4	200.500773065841	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTATCTTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	96161351	96146880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149605_96151244_96151325_96161115
55353	chr1	-	1776	4	NNC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	-14	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	21.2968437932844	134	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	NA	False	NA	NA	NA	33796836	33784564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_33785227_33785270_33786098_33787297_33787408_33796659
55354	chr14	+	1377	4	NNC	ENSMUSG00000090440.3	novel	1757	5	NA	NA	-37724	-336	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.88561808316413	14	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	41257443	41302926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41257738_41296051_41296215_41297159_41297292_41302138
55356	chr3	+	3460	9	ISM	ENSMUSG00000028167.16	ENSMUST00000029817.11	1059	10	77	35	55	-32	intron_retention	FALSE	canonical	3	27	junction_1	16.0385278314439	3	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATCAAATAAAATGTAT	NA	False	NA	NA	False	NA	NA	NA	134987098	135010152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_134987130_134991348_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322
55357	chr1	+	1401	3	Intergenic	novelGene_405	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	8	1	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTTGCTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	88397321	88402942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_88397777_88398642_88398830_88402183
55359	chr8	+	1631	2	Antisense	novelGene_ENSMUSG00000037070.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGAGGCCGCGAATGGC	5965	False	NA	NA	False	NA	NA	NA	79231897	79235511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_79233445_79235427
55360	chr10	-	1849	11	NIC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	40	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	442.964513251344	1	89	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	85793647	85774500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_85774984_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
55361	chr2	-	1620	9	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60465	7	60465	-7	intron_retention	FALSE	canonical	3	89	junction_8	14.1399257423793	148	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTGCTTCCGTGTTGCC	NA	False	NA	NA	False	NA	NA	NA	121956205	121950595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750
55362	chr1	-	1430	12	FSM	ENSMUSG00000042684.9	ENSMUST00000041874.9	1735	12	308	-3	-26	3	multi-exon	FALSE	canonical	3	88	junction_4	13.2309429459759	567	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTAATCTTGTT	NA	False	NA	NA	False	NA	NA	NA	153425483	153378757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_153379304_153384857_153384898_153388291_153388377_153390985_153391033_153391147_153391297_153394628_153394722_153400092_153400169_153403810_153403869_153411617_153411706_153413173_153413248_153421008_153421093_153425393
55363	chr9	+	536	1	NIC	ENSMUSG00000032115.15	novel	4489	26	NA	NA	-17	-1414	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCCACCCGGGAACCCCAG	NA	False	NA	NA	False	NA	NA	NA	44290902	44291438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44290900_44291400
55366	chr4	-	1440	3	FSM	ENSMUSG00000028636.15	ENSMUST00000030385.13	1443	3	3	0	3	0	multi-exon	FALSE	canonical	3	273	junction_2	22	574	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5508	False	NA	NA	False	NA	NA	NA	119279614	119275726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_119276491_119278776_119278881_119279042
55367	chr16	+	2912	8	NIC	ENSMUSG00000022971.19	novel	3047	9	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	25.5270964479164	7	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATAGTCTTTTTGAATC	NA	False	NA	NA	False	NA	NA	NA	91169681	91202477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_91169963_91180748_91180842_91181870_91181913_91184831_91185005_91188608_91188767_91190644_91190802_91196105_91196234_91200597
55368	chr4	+	926	5	ISM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	12970	127	12970	-127	3prime_fragment	FALSE	canonical	3	5793	junction_3	203.666854200677	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCATGCTTTTCTTTCT	-1	True	NA	NA	False	NA	NA	NA	46463871	46472530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
55369	chr10	-	1362	7	FSM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	67	2	23	-2	multi-exon	FALSE	canonical	3	135	junction_2	5.39804491356722	184	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTCTTGACTACTTAATG	NA	False	NA	NA	False	NA	NA	NA	71121025	71090811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_71091705_71092444_71092539_71094030_71094137_71095571_71095650_71097913_71097946_71098028_71098093_71120930
55370	chr9	-	1230	9	Antisense	novelGene_ENSMUSG00002075151.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCATGTGACGGTACAGC	NA	False	NA	NA	False	NA	NA	NA	21597504	21580908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21580951_21581777_21581865_21583336_21583385_21584464_21584632_21586361_21586525_21588743_21588972_21589609_21589689_21590223_21590443_21597307
55372	chr3	+	2263	11	NIC	ENSMUSG00000068874.14	novel	1712	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	16	junction_2	7.66811580507233	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATCACTCTGTGACG	2664	False	NA	NA	False	NA	NA	NA	94840376	94852069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_94840474_94844007_94844065_94844205_94844319_94844518_94845387_94846956_94847140_94847358_94847538_94849774_94849854_94849935_94850058_94851149_94851243_94851385_94851505_94851716
55373	chr17	+	1049	6	NIC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	24	-3	intron_retention	FALSE	canonical	3	1016	junction_3	64.0387382761403	125	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAACCTGCCTTATGTC	7412	False	NA	NA	False	NA	NA	NA	36198857	36203555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
55374	chr3	-	2859	2	Antisense	novelGene_ENSMUSG00000027751.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	59	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCTGCTGTAACGCCCA	NA	False	NA	NA	False	NA	NA	NA	54603202	54600278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_54601634_54601698
55375	chr1	+	2119	13	ISM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	1532	1	78	-1	3prime_fragment	FALSE	canonical	2	4	junction_7	13.8774397254441	186	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTAAAGAGTTCTAGGTT	6503	False	NA	NA	False	NA	NA	NA	74415893	74425220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
55376	chr18	+	813	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	18	45	5	1	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTTCATCTTTAAGT	NA	False	NA	NA	False	NA	NA	NA	34464215	34469607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
55377	chr2	+	1573	1	FSM	ENSMUSG00002076469.1	ENSMUST00020182820.1	64	1	-627	-882	-627	882	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACAGAGCAAGTTCCCGA	6919	False	NA	NA	False	NA	NA	NA	174127773	174129346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_174127800_174129300
55379	chr17	+	1182	6	FSM	ENSMUSG00000060586.12	ENSMUST00000235530.2	1669	6	13	474	13	1	multi-exon	FALSE	canonical	3	177	junction_2	11.7064085013295	965	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	34524853	34535174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
55381	chr15	+	382	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	107	-6	107	6	mono-exon	FALSE	NA	NA	NA	NA	NA	161	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGAAATAAAATACCAGC	NA	False	NA	NA	False	NA	NA	NA	68181774	68182156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_68181800_68182200
55382	chr11	+	3880	6	NIC	ENSMUSG00000042331.14	novel	2690	6	NA	NA	11	1195	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	7.07106781186548	8	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTGTGGTTTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	61967895	62030544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_61968063_62008525_62010109_62019025_62019234_62022655_62022730_62023101_62023281_62028875
55384	chrX	+	1567	11	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	31	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	79.2028408581409	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGCATTTATGACTTGA	3813	False	NA	NA	False	NA	NA	NA	7588262	7594419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7588470_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7594049
55385	chr11	+	1721	13	Antisense	novelGene_ENSMUSG00000004393.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTGTCAGTGCGCACGCG	NA	False	NA	NA	False	NA	NA	NA	6208927	6217730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_6209255_6209562_6209621_6211615_6211720_6212459_6212553_6212669_6212737_6213938_6214045_6214726_6214789_6215506_6215752_6216311_6216412_6216514_6216689_6216820_6216974_6217418_6217579_6217658
55386	chr10	+	1757	7	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	2	1	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	238.087285581477	1222	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	80438727	80451618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80438784_80444636_80444685_80445163_80445259_80445474_80445632_80446861_80446964_80448175_80448294_80450437
55387	chr7	+	324	1	FSM	ENSMUSG00000073894.2	ENSMUST00000098135.2	1472	1	0	1148	0	-1148	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTGTTCGAGAGCGGCCGG	NA	False	NA	NA	False	NA	NA	NA	106808651	106808975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_106808700_106809000
55389	chr11	+	3010	14	ISM	ENSMUSG00000039963.21	ENSMUST00000236813.2	4769	21	9615	20	-505	6	3prime_fragment	FALSE	canonical	0	0	junction_2	4.428257835269	37	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGTTTACAAAAGCTG	2297	False	NA	NA	False	NA	NA	NA	119129038	119156044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_119129075_119133252_119133411_119133538_119133662_119133822_119133945_119136660_119136905_119136993_119137177_119141764_119142011_119142628_119142843_119144075_119144246_119144445_119144538_119145167_119145289_119150680_119150870_119153900_119154060_119155091
55390	chr7	+	2085	10	NNC	ENSMUSG00000030867.8	novel	2199	10	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	502.098042661435	1	124	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTCTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	121758776	121769096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_121759198_121759776_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767793_121767867_121768051_121768207_121768303_121768487_121768609
55391	chr13	+	1474	11	NNC	ENSMUSG00000025451.16	novel	1525	11	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	171.355799434977	3	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATTTTGCTAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	119565134	119593921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119565177_119566695_119566866_119574504_119574691_119577290_119577408_119582272_119582385_119584301_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
55392	chr11	+	1570	12	NNC	ENSMUSG00000060600.16	novel	1564	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	27.8339230567175	70	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7116	False	NA	NA	False	NA	NA	NA	70548030	70553339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70548094_70548585_70548785_70548990_70549087_70549211_70549278_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
55393	chr2	+	1555	13	NNC	ENSMUSG00000027006.14	novel	4042	23	NA	NA	234	1919	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.4207684618843	1	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGGTTACTTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80146043	80165916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_80146141_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796
55394	chr16	+	3773	23	FSM	ENSMUSG00000068663.15	ENSMUST00000155633.8	6213	23	29	2411	-5	2	multi-exon	TRUE	canonical	3	10	junction_9	19.0952376045325	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCGGAGTCTCATTAGAA	NA	False	NA	NA	False	NA	NA	NA	10363256	10560331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245_10386395_10389357_10389464_10391163_10391288_10394365_10394541_10395751_10395806_10398792_10398907_10413665_10413850_10428866_10429000_10432363_10432465_10445242_10445366_10447908_10448019_10448620_10448666_10453109_10453161_10456650_10456780_10462624_10462746_10506343_10506496_10509249_10509455_10512483_10512655_10549524_10549684_10559477
55395	chr8	+	2044	4	Antisense	novelGene_ENSMUSG00000004383.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAGGGGAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	73541226	73564316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_73542642_73544699_73544898_73550318_73550467_73564033
55396	chr10	-	2246	12	NIC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	39	-23	combination_of_known_splicesites	FALSE	canonical	3	29	junction_10	11.696577164084	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATAAAAGTTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	42354372	42188606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42354258
55398	chr2	+	907	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	33	-4725	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	188.575415948103	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGATTATCTTCTGTTT	393	False	NA	NA	False	NA	NA	NA	112285374	112297782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_112285485_112289804_112289925_112293145_112293285_112295081_112295163_112297325
55399	chr2	-	1187	8	NIC	ENSMUSG00000015790.17	novel	1151	9	NA	NA	3	-10	intron_retention	FALSE	canonical	3	328	junction_4	27.4999072354651	14	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTAAAAACCATGGCTCA	NA	False	NA	NA	False	NA	NA	NA	26806341	26803404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26806019_26806268
55400	chr7	+	872	6	Antisense	novelGene_ENSMUSG00000030541.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGTGCTCAAGTAGAGC	1422	False	NA	NA	False	NA	NA	NA	79744600	79747944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_79744952_79745368_79745460_79745544_79745644_79745769_79745883_79747550_79747700_79747875
55401	chrX	+	1252	8	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	80	-771	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	331.305211032279	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTTAGATTGTTTGCA	NA	False	NA	NA	False	NA	NA	NA	150799503	150844919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811957_150812044_150812186_150812319_150844861
55402	chr11	+	1133	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	64	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGACGGAATCACGCCAAG	NA	False	NA	NA	False	NA	NA	NA	33102557	33113055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33104061_33106003_33106106_33106667_33106750_33106998_33107046_33109936_33109996_33110333_33110479_33111107_33111228_33111548_33111630_33112928
55403	chr16	-	1426	10	Antisense	novelGene_ENSMUSG00000004460.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	31	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCAGGTTCTGCGGGGC	NA	False	NA	NA	False	NA	NA	NA	22690857	22676814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_22676858_22681290_22681447_22684201_22684301_22685667_22685803_22687460_22687604_22687870_22687951_22688162_22688224_22689320_22689431_22689687_22689848_22690418
55404	chr15	+	895	6	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	0	-363	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5771.39493017069	18	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGTGTAAAGTTAGTC	NA	False	NA	NA	False	NA	NA	NA	103148880	103153019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149605_103151348_103151508_103152051_103152208_103152385_103152456_103152682
55405	chr8	+	2243	6	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	22	junction_1	142.713138848531	156	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTCAAACTTTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	96442541	96445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96443548_96444730_96444820_96444964_96445103
55406	chr2	-	2165	6	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	14	-3	intron_retention	FALSE	canonical	3	75	junction_2	4.57820925690384	10	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGAGCTGGGCGAGTGGC	9441	False	NA	NA	False	NA	NA	NA	24825140	24815369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_24815689_24815767_24816461_24816556_24816740_24816889_24817045_24817137_24817852_24825039
55407	chr15	+	1619	15	NNC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-11	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	165.807747658767	1	58	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAGATGGACTGGAG	2136	False	NA	NA	False	NA	NA	NA	102379100	102407305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391596_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
55408	chr13	-	2672	5	FSM	ENSMUSG00000021594.12	ENSMUST00000091514.6	2644	5	-28	0	-28	0	multi-exon	FALSE	canonical	2	14	junction_3	7.15454401062709	66	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATTGTTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	69759589	69721567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_69723316_69734703_69734855_69743034_69743137_69748349_69748517_69759085
55410	chr11	-	2359	7	NNC	ENSMUSG00000041329.14	novel	2842	7	NA	NA	-18	312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.0670045854286	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCTTCCCAGGGAGCTC	NA	False	NA	NA	False	NA	NA	NA	69496786	69491179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69492239_69492348_69492452_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
55411	chr2	+	1460	9	FSM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	270	17	58	0	multi-exon	FALSE	canonical	3	129	junction_2	14.5945195193264	443	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	NA	False	NA	NA	NA	154633346	154709164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
55412	chr4	-	3033	3	FSM	ENSMUSG00000028479.19	ENSMUST00000173383.2	658	3	-64	-2311	-42	2020	multi-exon	FALSE	canonical	2	3	junction_2	34.5	206	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTAAGCTTATTTTGT	-31	True	NA	NA	False	NA	NA	NA	44072666	44057679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_44060228_44066754_44066961_44072387
55413	chr12	+	1639	8	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	1	-1485	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1955.91523542388	1	102	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTACTTGAAAGCAGT	NA	False	NA	NA	False	NA	NA	NA	78908859	78932299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913542_78921346_78921418_78923865_78924013_78926724_78926832_78927905_78928004_78930031_78930176_78931564
55414	chr8	-	1128	6	NIC	ENSMUSG00000031821.12	novel	3900	5	NA	NA	-40	274	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	542.881423517143	2577	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTACACTTAGAACGGGT	NA	False	NA	NA	False	NA	NA	NA	121315813	121308008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121308551_121308820_121308948_121312831_121312932_121314194_121314290_121315463_121315579_121315664
55416	chr15	+	977	6	NNC	ENSMUSG00000001285.13	novel	1319	6	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	204.652290483151	14	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	5950	False	NA	NA	False	NA	NA	NA	102240166	102246286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102240290_102242616_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
55417	chr5	-	1617	1	Antisense	novelGene_ENSMUSG00000085269.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCCAAGGCCGTCTCTG	2126	False	NA	NA	False	NA	NA	NA	100818826	100817209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_100817200_100818800
55421	chr11	-	2388	8	FSM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	27	4	-26	-4	multi-exon	FALSE	canonical	3	39	junction_7	8.7084289452161	99	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCTGACTCTGCTACT	NA	False	NA	NA	False	NA	NA	NA	98291289	98279506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710_98289809_98291040
55422	chr15	+	1148	4	NNC	ENSMUSG00000042406.9	novel	659	4	NA	NA	-26	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	649.595429650042	3	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATGTGGGTTTTCAGT	4458	False	NA	NA	False	NA	NA	NA	80139697	80141740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80141028_80141088_80141155
55424	chr5	+	3564	2	ISM	ENSMUSG00000070639.6	ENSMUST00000112707.3	6726	5	64147	2715	64147	-2715	3prime_fragment	FALSE	canonical	3	44	junction_1	0	23	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGACTTACACTGGGGA	6746	False	NA	NA	False	NA	NA	NA	105627787	105635225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_105629795_105633668
55425	chr8	-	2181	1	FSM	ENSMUSG00000080518.3	ENSMUST00000116868.3	76	1	25	-2130	25	2130	mono-exon	FALSE	NA	NA	NA	NA	NA	7	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGATTACAGAAGCAAACT	NA	False	NA	NA	False	NA	NA	NA	111569065	111566884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_111566900_111569100
55427	chr7	-	1036	8	Antisense	novelGene_ENSMUSG00000025503.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAAACGCGAACAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	140982726	140972133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_140972231_140975957_140976085_140978406_140978510_140980194_140980331_140981491_140981667_140981800_140981982_140982095_140982242_140982655
55429	chr16	+	1750	14	NIC	ENSMUSG00000093575.2	novel	1012	9	NA	NA	86	21630	combination_of_known_splicesites	FALSE	canonical	3	7	junction_3	51.5429389559134	20	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	NA	False	NA	NA	False	NA	NA	NA	3702597	3759011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_3702671_3715114_3715245_3717735_3717833_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
55430	chr5	+	1487	9	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	26	32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	263.750710899516	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTCTTCTGTGTAACT	NA	False	NA	NA	False	NA	NA	NA	64250318	64285539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261243_64269350_64269541_64273642_64273777_64285119
55431	chr7	-	1471	2	Genic_Genomic	ENSMUSG00000082016.4	novel	765	1	NA	NA	-28	870	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGTGATGTGCAATAAAAAA	8929	False	NA	NA	False	NA	NA	NA	27169988	27168325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_27169584_27169775
55432	chr10	+	684	8	NNC	ENSMUSG00000020153.15	novel	983	9	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	793.673453644765	78	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9696	False	NA	NA	False	NA	NA	NA	80085289	80092627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090783_80090923_80090971_80091757_80091847_80092469
55433	chr3	+	2242	1	Genic_Genomic	ENSMUSG00000047824.14	novel	NA	NA	NA	NA	1858	3	mono-exon	FALSE	NA	NA	NA	NA	NA	138	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCTTTGTTCATC	552	False	NA	NA	False	NA	NA	NA	89340196	89342438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89340200_89342400
55434	chr10	-	1987	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	206	-18	206	18	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	144	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATAGCCCTTTATTGCG	NA	False	NA	NA	False	NA	NA	NA	61619720	61574425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
55435	chr14	+	1838	6	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	12	-23251	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	319.182455658202	99	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTACGAGTGATTGTATT	NA	False	NA	NA	False	NA	NA	NA	122419127	122616388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122419194_122548655_122548843_122558374_122558476_122608652_122608842_122613293_122613396_122615195
55437	chr1	+	1296	5	ISM	ENSMUSG00000026197.13	ENSMUST00000160033.8	665	6	-44	-137	-1	19	intron_retention	FALSE	canonical	3	87	junction_1	35.0784834335808	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGCCCTGGAACTGTCCCT	2043	False	NA	NA	False	NA	NA	NA	75145300	75147350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408
55439	chr19	-	1890	16	NIC	ENSMUSG00000024969.16	novel	3018	18	NA	NA	10	-141	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	111.255262047839	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTCCCACGGGGTGTGT	3931	False	NA	NA	False	NA	NA	NA	7319154	7258542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7318955
55440	chr5	+	1760	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160422.8	1756	8	-9	5	-9	-5	multi-exon	FALSE	canonical	3	31	junction_6	266.097419631784	13	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGCCTGTGTTTCATT	NA	False	NA	NA	False	NA	NA	NA	145104047	145118845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115567_145115739_145117945
55441	chr8	-	1954	8	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	45	-7	intron_retention	FALSE	canonical	3	26	junction_4	38.7514318366142	1	67	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGGAACTATTCATTGC	NA	False	NA	NA	False	NA	NA	NA	27713811	27687498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27690260_27690373_27690749_27690932_27692399_27692492_27713715
55443	chr1	-	3279	2	NNC	ENSMUSG00000034486.9	novel	2135	2	NA	NA	-3883	-2265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	36	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCGGCGGCGCGCGCAGC	NA	False	NA	NA	False	NA	NA	NA	89862784	89857952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_89858174_89859726
55445	chrX	-	2100	13	NIC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	6	-3	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	32.0350285711681	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATATGTGCTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	10082966	10024457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
55446	chr19	+	2306	5	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-9	-543	intron_retention	FALSE	canonical	3	397	junction_3	9.82344135219425	2	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGATTTATTTATTTATTA	4120	False	NA	NA	False	NA	NA	NA	41921909	41927607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246
55447	chr5	-	2331	5	FSM	ENSMUSG00000037339.18	ENSMUST00000045329.10	2346	5	16	-1	-1	1	multi-exon	FALSE	canonical	3	127	junction_2	24.5089269450949	109	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTCTGCCTAGATTCTT	NA	False	NA	NA	False	NA	NA	NA	33786950	33757698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196
55448	chr11	-	2437	11	NIC	ENSMUSG00000025137.16	novel	1486	13	NA	NA	-17	-14	intron_retention	FALSE	canonical	3	99	junction_5	98.1063198779773	1	111	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGGGAAGCACTCTGT	NA	False	NA	NA	False	NA	NA	NA	120508712	120500926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
55449	chr4	+	1051	7	NNC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	1	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	159.636044384301	1	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGCCTATGACTTGGGG	-22	True	NA	NA	False	NA	NA	NA	44981403	44990701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44981551_44982883_44983010_44983873_44983947_44986277_44986391_44987215_44987352_44988919_44989051_44990376
55451	chr11	-	2640	8	NNC	ENSMUSG00000020448.17	novel	2906	8	NA	NA	57	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	56.3647016477222	5	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6901	False	NA	NA	False	NA	NA	NA	3402277	3365981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382508_3382568_3382621_3402208
55452	chr11	+	1816	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	21	-3	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	17.6131264181639	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGTGTTGAGTTCATTG	NA	False	NA	NA	False	NA	NA	NA	80074697	80090580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_80075082_80084711_80084875_80087698_80087774_80089386
55453	chr3	-	2039	2	ISM	ENSMUSG00000027770.6	ENSMUST00000162070.2	702	4	2483	-766	2483	766	3prime_fragment	FALSE	canonical	3	517	junction_1	0	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTGCTTTTTCCCATGC	NA	False	NA	NA	False	NA	NA	NA	62393563	62390844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_62391696_62392375
55454	chr6	-	855	6	ISM	ENSMUSG00000029847.14	ENSMUST00000201355.4	2003	12	-63	9963	-63	-2059	5prime_fragment	FALSE	canonical	2	5	junction_1	2.56124969497314	4	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTTCAACCTGTTTCAGG	NA	False	NA	NA	False	NA	NA	NA	34965402	34932832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_34932926_34933811_34933994_34936389_34936550_34953960_34954119_34955843_34955991_34965287
55455	chr7	-	896	8	NNC	ENSMUSG00000030587.6	novel	1466	4	NA	NA	819	2451	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGCCTGGTTGGGACAC	2730	False	NA	-6	True	NA	NA	NA	28946944	28943534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28943625_28943697_28943728_28943823_28943940_28944032_28944097_28944204_28944262_28945087_28945246_28945324_28945419_28946657
55456	chr2	+	1322	8	Antisense	novelGene_ENSMUSG00000027361.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	265	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGGGCGCTATTTTCC	NA	False	NA	NA	False	NA	NA	NA	126480938	126517387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_126481265_126488482_126488675_126491993_126492100_126492426_126492541_126494152_126494348_126495474_126495645_126500390_126500498_126517275
55459	chr1	-	1679	11	ISM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	-73	13234	-12	-286	5prime_fragment	FALSE	canonical	3	212	junction_10	201.522107968332	1	52	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCGTTTTCCTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	63215964	63196127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
55460	chrUn_JH584304v1	+	3786	1	Intergenic	novelGene_4593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCCTAAATAAACTCTATT	NA	False	NA	NA	False	NA	NA	NA	25406	29192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_25400_29200
55461	chrX	-	2996	6	ISM	ENSMUSG00000002006.13	ENSMUST00000002080.12	3970	8	26155	-2	26155	2	3prime_fragment	FALSE	canonical	1	1	junction_1	0.748331477354788	42	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGACTTGTGTTCATTGC	NA	False	NA	NA	False	NA	NA	NA	72842420	72836962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72839527_72839706_72839818_72839981_72840084_72840435_72840499_72841799_72841899_72842363
55462	chr17	+	3116	11	ISM	ENSMUSG00000000708.15	ENSMUST00000000724.15	4653	18	77725	0	-1	0	3prime_fragment	FALSE	canonical	3	209	junction_3	28.9523746867161	1	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGTGTTATGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	53951723	53979748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_53951765_53955774_53955912_53960049_53960259_53961466_53961594_53966345_53966457_53967056_53967201_53970562_53970678_53972433_53972471_53972680_53972745_53972850_53972936_53977702
55463	chr19	-	1768	15	NNC	ENSMUSG00000024830.18	novel	4586	15	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	26.1413934016454	120	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2741	False	NA	NA	False	NA	NA	NA	4213361	4206793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208849_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
55464	chr9	+	1321	5	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-94	-2	intron_retention	FALSE	canonical	3	1280	junction_4	535.431835063998	2	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAAAAGTGACAACT	3750	False	NA	NA	False	NA	NA	NA	108440239	108442761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108440711_108440794_108440891_108441833_108441978_108442064_108442610_108442696
55465	chr4	-	1225	7	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	729.869946558213	1	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	-1	True	NA	NA	False	NA	NA	NA	41098183	41092726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093011_41093545_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
55466	chr5	-	1100	9	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	11	414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	545.359743655507	48	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGCCTTTGAGCTACTT	NA	False	NA	NA	False	NA	NA	NA	25047596	25008250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182_25047277_25047504
55467	chr1	-	1356	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	55	637	55	-637	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTGTTAATCATATATAT	NA	False	NA	NA	False	NA	NA	NA	182110314	182103973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
55468	chr5	+	2668	12	FSM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-8	7	-5	-7	multi-exon	TRUE	canonical	3	25	junction_1	8.12708968677346	77	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATAATTTGTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	106024425	106063677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
55469	chrX	+	4627	32	Antisense	novelGene_ENSMUSG00000034055.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	211	18	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGACTGAAGGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	101558970	101687795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_101559822_101560382_101560586_101561050_101561103_101564360_101564531_101571672_101571744_101576004_101576127_101580790_101580892_101584717_101584852_101584986_101585055_101588278_101588359_101588910_101589091_101598520_101598631_101599127_101599228_101600709_101600879_101603170_101603340_101612894_101612975_101617073_101617219_101618570_101618684_101629686_101629818_101636232_101636311_101641006_101641114_101641789_101641885_101652639_101652753_101653755_101653815_101659520_101659664_101660922_101661024_101664947_101665029_101669195_101669283_101680153_101680310_101682678_101682735_101685826_101685986_101687452
55470	chr3	+	985	7	NNC	ENSMUSG00000005687.15	novel	1467	7	NA	NA	-7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1417.20719100004	22	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5016	False	NA	NA	False	NA	NA	NA	103079057	103086144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103079182_103079263_103079357_103080590_103080617_103081681_103081818_103082934_103082986_103084654_103084736_103085670
55471	chr1	+	1411	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	171	4	-27	-4	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	7	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTCTGGCTGTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	172327784	172334943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
55472	chr11	+	1257	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	16	-55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAACAAATAGCCTTT	NA	False	NA	NA	False	NA	NA	NA	120653635	120655190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653939_120654236
55473	chr17	+	1750	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	-104	14	-29	-10	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	385	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAACCGGAAATGTTCG	240	False	NA	NA	False	NA	NA	NA	56266069	56275271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
55475	chr19	+	1778	11	NNC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	0	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	238.099328012491	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTATATTTTCATTCCAAA	3623	False	NA	NA	False	NA	NA	NA	4198665	4203992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200097_4200219_4200438_4200617_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
55476	chr15	+	2573	12	NIC	ENSMUSG00000068206.14	novel	1977	13	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	173	junction_8	27.3523081353398	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGGCTCCTTGCAA	4410	False	NA	NA	False	NA	NA	NA	79113608	79133664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
55478	chr16	-	2335	10	FSM	ENSMUSG00000022508.6	ENSMUST00000023151.6	3525	10	226	964	226	-964	multi-exon	FALSE	canonical	0	0	junction_5	2.06080411011016	20	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATCCACTAGTGCAAATC	NA	False	NA	NA	False	NA	NA	NA	23807376	23784765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_23785019_23786809_23786948_23787056_23787188_23788655_23788824_23790164_23790350_23790994_23791970_23793562_23793785_23796264_23796437_23797300_23797340_23807324
55479	chr1	+	1258	10	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	640.86278649264	1	34	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724176	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59749730_59749812_59750429
55480	chr12	-	2098	11	Intergenic	novelGene_4480	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	92	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGAAGGGCGCTGTACTCC	NA	False	NA	NA	False	NA	NA	NA	110538083	110452281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_110452391_110488930_110489121_110510508_110510618_110512026_110512115_110512202_110512281_110519216_110519320_110521265_110521331_110527731_110527892_110534148_110534290_110535387_110535489_110537129
55481	chr5	+	1227	2	Genic_Genomic	ENSMUSG00000070697.5	novel	1629	1	NA	NA	7	-340	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAGAAGGAAGAAAACAG	NA	False	NA	NA	False	NA	NA	NA	88702327	88703609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_88703178_88703232
55482	chr12	+	2475	8	NNC	ENSMUSG00000020583.5	novel	3014	8	NA	NA	0	-541	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	6.68534797531291	44	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAACGGCATGGTTGATG	NA	False	NA	NA	False	NA	NA	NA	8997928	9021487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_8998252_9001997_9002565_9005366_9005493_9008789_9008916_9011117_9011244_9013472_9013599_9017628_9017738_9020515
55483	chr5	+	792	5	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2183.04940106723	3	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGTCTCTGTAGATTTC	609	False	NA	NA	False	NA	NA	NA	135807489	135819241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135807656_135812158_135812328_135813037_135813054_135818501_135818632_135818930
55485	chr1	+	1846	12	FSM	ENSMUSG00000026546.17	ENSMUST00000085894.12	1908	12	61	1	-31	-1	multi-exon	TRUE	canonical	3	18	junction_1	6.26415751889171	84	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGCTCCACTTCACTG	5483	False	NA	NA	False	NA	NA	NA	172348671	172373436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
55486	chr4	+	1010	4	NNC	ENSMUSG00000028797.21	novel	652	4	NA	NA	3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	190.501093610159	32	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAAATGTTTTATTTGTG	3206	False	NA	NA	False	NA	NA	NA	129494502	129502324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129494928_129495199_129495257_129501545
55487	chr12	+	1016	8	NNC	ENSMUSG00000021024.15	novel	1042	7	NA	NA	86	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	1177.54585681321	97	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGTGCATCCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	55445665	55465239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55464246_55464327_55465021
55489	chr13	+	3900	7	ISM	ENSMUSG00000091462.3_ENSMUSG00000021408.16	ENSMUST00000171137.2	1792	9	5428	-2388	-118	134	3prime_fragment	FALSE	canonical	3	34	junction_3	5.15320827791344	45	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTCATGTTGGCATCTCC	NA	False	NA	NA	False	NA	NA	NA	34199108	34219153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_34199341_34200979_34201130_34205363_34205441_34210724_34210816_34211700_34212235_34214022_34214164_34216478
55490	chr12	+	1355	1	ISM	ENSMUSG00000021096.12	ENSMUST00000021514.10	7668	6	35263	1991	5349	-1991	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTTTTGCTAACTTACC	NA	False	NA	NA	False	NA	NA	NA	72843247	72844602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_72843200_72844600
55492	chr1	+	2131	12	NIC	ENSMUSG00000026305.16	novel	2760	23	NA	NA	4	2	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	27.2156979494562	58	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGGGTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	90981179	91056664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
55493	chr9	-	925	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	68	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6385.40221912449	18	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGAAATCTGTGTTGGTC	7168	False	NA	NA	False	NA	NA	NA	78388938	78385742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386785_78387921_78387971_78388920
55495	chr2	-	1219	5	NNC	ENSMUSG00000026849.19	novel	1401	5	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	245.3134474504	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30857904	30850638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30851210_30853486_30853576_30853807_30853882_30857101_30857368_30857685
55496	chr11	-	2036	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	16	2313	-10	-3	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	622	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCAAGTGGTACGCCTGT	NA	False	NA	NA	False	NA	NA	NA	101193096	101179090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
55497	chr9	+	2533	19	Antisense	novelGene_ENSMUSG00002075474.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTCCTGGGCGGGCCACG	4194	False	NA	NA	False	NA	NA	NA	114415207	114469134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_114415403_114420578_114420754_114422494_114422580_114426545_114426676_114427774_114427904_114430409_114430521_114439709_114439797_114442696_114442873_114444062_114444177_114446864_114447059_114448289_114448439_114451910_114452033_114454889_114454974_114455465_114455552_114456460_114456605_114458076_114458226_114460888_114461052_114461744_114461837_114468986
55498	chr6	-	1464	6	NIC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	-6	3	combination_of_known_junctions	FALSE	canonical	3	78	junction_2	158.228189650264	160	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGTGTGCCCATAGTCTG	NA	False	NA	NA	False	NA	NA	NA	88423502	88234851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_88235374_88258530_88258688_88332464_88332630_88335527_88335625_88353185_88353394_88423187
55499	chr7	-	1406	11	NIC	ENSMUSG00000044702.14	novel	3304	12	NA	NA	-4	-113	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	54.3301021534103	13	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGGCTTTCTGGCAC	NA	False	NA	NA	False	NA	NA	NA	121732115	121710907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121710994_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121727360_121727667_121728145_121728240_121728896_121728957_121731942
55500	chr17	-	1440	1	NIC	ENSMUSG00000057411.10	novel	1886	3	NA	NA	2	-443	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTCCTGGCTCCCAGTGT	8372	False	NA	NA	False	NA	NA	NA	26011367	26009927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26009900_26011400
55501	chr4	+	1227	7	NIC	ENSMUSG00000006392.17	novel	635	5	NA	NA	46	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	242.454577647489	1506	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	118266643	118272308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118266747_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
55502	chr18	+	1329	12	NNC	ENSMUSG00000024581.14	novel	3567	12	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	93.4372109852077	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTGGTTCTTTCGATG	NA	False	NA	NA	False	NA	NA	NA	63110952	63130432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_63111096_63113536_63113605_63115689_63115796_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887_63130162_63130262
55503	chrX	-	3932	5	FSM	ENSMUSG00000051224.14	ENSMUST00000112188.8	4050	5	112	6	112	-6	multi-exon	FALSE	canonical	3	63	junction_2	3.35410196624968	1	124	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATCTCTTATTCTCCA	NA	False	NA	NA	False	NA	NA	NA	165293362	165282813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_165286402_165288701_165288833_165290704_165290743_165291901_165292003_165293288
55504	chr16	-	1749	7	Intergenic	novelGene_3654	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCAGCGCACAGCGATGA	NA	False	NA	NA	False	NA	NA	NA	38411738	38383205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_38383493_38384476_38384667_38402333_38402489_38405535_38405879_38406580_38406771_38408544_38408662_38411271
55505	chr17	-	1151	9	Antisense	novelGene_ENSMUSG00000092713.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTCAAAGCCTGGACATG	NA	False	NA	NA	False	NA	NA	NA	71964868	71947239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_71947314_71948279_71948409_71949693_71949827_71955765_71955865_71957540_71957622_71959770_71959890_71960447_71960516_71964333_71964381_71964467
55506	chr8	+	3087	11	NNC	ENSMUSG00000015568.17	novel	1900	11	NA	NA	114	-159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	49.8807578130084	1	126	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTTTGTGTCCGTCTCCA	NA	False	NA	NA	False	NA	NA	NA	69333422	69359427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69333493_69340094_69340256_69345246_69345427_69347281_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157_69357880_69358465
55509	chr6	-	1587	3	NIC	ENSMUSG00000032641.19	novel	1647	3	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	15	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	134864807	134846119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134847446_134863853_134863900_134864592
55511	chr4	-	860	7	Antisense	novelGene_ENSMUSG00000028691.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGACAGCGCGCGCGGGG	743	False	NA	NA	False	NA	NA	NA	116556712	116542799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_116542855_116544600_116544719_116548970_116549130_116550086_116550198_116550909_116551045_116556368_116556520_116556581
55512	chr10	-	905	2	FSM	ENSMUSG00000020219.8	ENSMUST00000218149.2	435	2	-10	-460	-7	-216	multi-exon	FALSE	canonical	3	3722	junction_1	0	37	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCTGCCCAGCACTT	5625	False	NA	NA	False	NA	NA	NA	80736626	80735499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80736094_80736315
55513	chr9	-	3918	26	FSM	ENSMUSG00000034908.17	ENSMUST00000038488.17	4248	26	312	18	31	0	multi-exon	FALSE	canonical	3	112	junction_16	17.0789226826519	96	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGGGGTCTTACTGATG	NA	False	NA	NA	False	NA	NA	NA	45866244	45849172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861431_45863057_45863142_45863248_45863351_45863911_45863958_45864046_45864212_45864422_45864545_45866021
55514	chr2	-	612	4	ISM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	290	2	247	-2	3prime_fragment	FALSE	canonical	3	4118	junction_1	167.551650411315	3	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGCTGTGATTTGTA	NA	False	NA	NA	False	NA	NA	NA	73741379	73738792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298
55515	chr19	-	3631	1	NIC	ENSMUSG00000024782.8	novel	2809	5	NA	NA	2768	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	25	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCAAACAGTACCCGGG	1987	False	NA	NA	False	NA	NA	NA	29001876	28998245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_28998200_29001900
55516	chr7	-	1565	14	FSM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	9	11	9	-11	multi-exon	FALSE	canonical	3	97	junction_9	7.3524942432914	392	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCACAGAAATCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	84255141	84234377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
55518	chr12	-	2517	7	ISM	ENSMUSG00000066440.6	ENSMUST00000021547.8	9391	42	55342	4	-640	-2	3prime_fragment	FALSE	canonical	3	41	junction_3	8.74960316560446	47	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACGTCTTAGCTTCATCA	8552	False	NA	NA	False	NA	NA	NA	79287736	79279123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_79280944_79283387_79283433_79283946_79284130_79285095_79285156_79285677_79285820_79286630_79286831_79287669
55519	chr8	-	2348	10	FSM	ENSMUSG00000031921.18	ENSMUST00000068421.13	2667	10	318	1	-37	-1	multi-exon	FALSE	canonical	3	17	junction_3	7.27247474309048	135	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTTCTCTAGCTGGTTC	NA	False	NA	NA	False	NA	NA	NA	107822859	107796034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107797198_107798506_107798548_107799191_107799278_107803241_107803632_107806000_107806102_107807724_107807872_107809614_107809702_107821453_107821585_107822560_107822657_107822753
55521	chr5	+	3162	16	ISM	ENSMUSG00000029423.11	ENSMUST00000086056.8	4016	22	5817	60	4501	-60	3prime_fragment	FALSE	canonical	1	1	junction_6	2.91661904723031	7	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGGCGATGTGTGTGTG	4705	False	NA	NA	False	NA	NA	NA	128819054	128832478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_128819179_128820290_128820372_128820843_128821042_128821337_128821450_128822467_128822595_128822711_128822830_128823280_128823396_128824355_128824544_128824898_128824972_128826909_128827111_128827261_128827366_128827894_128827966_128828045_128828200_128829646_128829773_128831004_128831153_128831256
55522	chr8	-	617	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	398	-61	398	61	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTCTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592032	103591415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592000
55526	chr2	-	2255	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	10	872	10	-872	multi-exon	FALSE	canonical	3	256	junction_2	30.0416377715996	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTTGCCTGTGACACTG	NA	False	NA	NA	False	NA	NA	NA	129139122	129111001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
55527	chr10	+	2864	3	FSM	ENSMUSG00000020185.17	ENSMUST00000174857.8	2865	3	-5	6	-5	-6	multi-exon	FALSE	canonical	3	33	junction_1	1.5	42	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGGTTTTCGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	110581320	110592492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_110581541_110582192_110582286_110589941
55528	chr4	+	1172	7	NNC	ENSMUSG00000028792.15	novel	1781	7	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	804.775417257648	183	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2949	False	NA	NA	False	NA	NA	NA	128887096	128905322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128901949_128904810
55529	chr6	+	2295	3	NNC	ENSMUSG00000030087.12	novel	2240	2	NA	NA	-445	6	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	174	117	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTCTACCATTTT	NA	False	NA	NA	False	NA	NA	NA	90439112	90452209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90439196_90443401_90444506_90451101
55531	chr11	+	1656	3	NIC	ENSMUSG00000038046.5	novel	1510	4	NA	NA	18	-7	intron_retention	FALSE	canonical	3	136	junction_2	4	299	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTACCCATATGAGTGT	589	False	NA	NA	False	NA	NA	NA	76134579	76141438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_76135350_76138172_76138341_76140720
55532	chr1	+	872	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	25	-98	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	11249.633935711	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTTTTTTTGGCCTGTT	NA	False	NA	NA	False	NA	NA	NA	86454553	86458336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457452_86457527_86457686_86457909_86457951
55533	chr8	-	1554	11	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.384972834162	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTTTGGTACTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	83500774	83490248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_83490862_83490968_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
55534	chr8	+	813	6	FSM	ENSMUSG00000031818.13	ENSMUST00000181847.8	611	6	-42	-160	-14	-2	multi-exon	FALSE	canonical	1	1	junction_2	4257.36254505063	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCTGTGTGGTTCATTC	NA	False	NA	NA	False	NA	NA	NA	121395032	121400944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121397741_121397884_121399463_121399632_121399959_121400092_121400709
55535	chr2	-	1289	4	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	127.452823516085	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119493298	119485926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493089
55536	chr7	-	2260	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	-1	3	-1	-3	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	126	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGAGTTGTTGCTTAA	NA	False	NA	NA	False	NA	NA	NA	98831927	98802867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
55537	chr11	+	1018	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	168	-739	-22	-8	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	3	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAACGCCTGATGTCCA	4758	False	NA	NA	False	NA	NA	NA	100211511	100212914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100211656_100211773_100211876_100212142
55538	chr14	-	1374	4	NIC	ENSMUSG00000022223.10	novel	867	5	NA	NA	2	-4	intron_retention	FALSE	canonical	3	17	junction_3	83.7230885452487	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCACTGGCTTCCGCTG	NA	False	NA	NA	False	NA	NA	NA	56137652	56134743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_56135470_56135699_56135844_56136640_56136763_56137270
55539	chr5	+	2325	18	Antisense	novelGene_ENSMUSG00000104369.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	7	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCAGCAGGCGGGCGGGC	NA	False	NA	NA	False	NA	NA	NA	136337282	136596159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_136337451_136338601_136338705_136340350_136340417_136341498_136342168_136343159_136343257_136344851_136344902_136348634_136348694_136355603_136355786_136361476_136361580_136368937_136368991_136388854_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436886_136514596_136514708_136596033
55540	chr11	+	1974	7	FSM	ENSMUSG00000019461.13	ENSMUST00000019605.4	1927	7	-46	-1	13	1	multi-exon	FALSE	canonical	3	67	junction_4	3.33749739908346	120	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCGGATGTGATGGGAG	NA	False	NA	NA	False	NA	NA	NA	69737455	69741870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
55542	chr14	-	1167	10	NIC	ENSMUSG00000079197.11	novel	962	11	NA	NA	2	0	intron_retention	FALSE	canonical	3	915	junction_8	63.3929543929502	30	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATATTACCTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	55828428	55824903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827553_55827951_55827985_55828298
55543	chr6	+	1549	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	500	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2308	False	NA	NA	False	NA	NA	NA	113303932	113311149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
55545	chr8	+	1332	8	NIC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	-3	170	intron_retention	FALSE	canonical	3	1933	junction_4	49.0272727100718	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCGTCATCGTGCCA	NA	False	NA	NA	False	NA	NA	NA	95584125	95590539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_95584270_95584374_95584425_95586871_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
55546	chrX	+	466	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	43	492	27	0	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	57	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGGCTTTGTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	105059348	105065564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105059477_105063184_105063310_105065351
55547	chr7	-	855	1	ISM	ENSMUSG00000025104.14	ENSMUST00000107305.8	5887	6	52238	130	51788	-130	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTCATGACAACATTCAAA	NA	False	NA	NA	False	NA	NA	NA	81531983	81531128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_81531100_81532000
55548	chr7	-	929	4	Antisense	novelGene_ENSMUSG00000077575.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTCACGAAGTCTCGC	NA	False	NA	NA	False	NA	NA	NA	109121566	109118402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109118429_109118787_109118854_109119122_109119201_109120807
55549	chr1	+	1586	5	Antisense	novelGene_ENSMUSG00000058407.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGGGGCTGTTAACTC	5143	False	NA	NA	False	NA	NA	NA	38027426	38036286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_38027594_38028492_38029537_38033067_38033191_38034712_38034923_38036244
55550	chr15	+	1231	10	NNC	ENSMUSG00000022300.11	novel	1551	11	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	246.96108555353	16	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	38976300	39010251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_38976447_38982105_38982162_38986634_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
55551	chr11	+	1264	10	NIC	ENSMUSG00000023170.15	novel	1159	11	NA	NA	-22	-2	intron_retention	FALSE	canonical	3	122	junction_1	69.3901120788905	719	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCATGCCTGAGTGCTGT	4069	False	NA	NA	False	NA	NA	NA	69804853	69807414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69807120_69807245
55553	chr15	+	1470	13	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	31	-12	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	169.73181460436	1	48	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAAAGATGGACTGGA	2178	False	NA	NA	False	NA	NA	NA	102379142	102407304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
55554	chr4	-	1596	10	NIC	ENSMUSG00000038816.15	novel	1956	12	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	97.6023679129878	49	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGGATTTCCTACTGA	7	True	NA	NA	False	NA	NA	NA	56846069	56826002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_56826384_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
55555	chr5	+	1611	9	NIC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	3	-3	intron_retention	FALSE	canonical	1	4	junction_7	92.634277538069	2	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGACAGATCACAGTTTT	NA	False	NA	NA	False	NA	NA	NA	135398809	135404994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403920_135404128_135404553_135404729
55556	chr12	+	2016	12	FSM	ENSMUSG00000020953.18	ENSMUST00000085412.7	2456	12	7	433	7	-433	multi-exon	TRUE	canonical	0	0	junction_1	2.34608870919344	15	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTCCCTCTTTAATC	NA	False	NA	NA	False	NA	NA	NA	51640146	51652111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_51640189_51640387_51640441_51640520_51640575_51642117_51642275_51643226_51643361_51643797_51643861_51644810_51644856_51644934_51645083_51648596_51648701_51649429_51649657_51649978_51650496_51651639
55557	chr4	-	1074	4	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.117073382335	20	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAACTTCTTTTTGTGTGT	2	True	NA	NA	False	NA	NA	NA	41098180	41092726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093426_41094769_41094839_41095144_41095272_41098001
55558	chr16	-	812	1	Intergenic	novelGene_3862	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTTAGAAAAACAAGTTAA	NA	False	NA	NA	False	NA	NA	NA	93391718	93390906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_93390900_93391700
55560	chr5	+	1944	15	NNC	ENSMUSG00000029146.15	novel	2018	15	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	104.474608769552	1	97	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCTACCTTTGGTTCCC	NA	False	NA	NA	False	NA	NA	NA	31350636	31356236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352836_31353101_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
55561	chr3	-	1819	3	FSM	ENSMUSG00000027805.17	ENSMUST00000066882.10	2342	3	516	7	-14	3	multi-exon	FALSE	canonical	3	22	junction_1	7	164	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCCATTGGACTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	57754984	57749322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_57750736_57752594_57752788_57754771
55562	chr19	-	1862	5	NNC	ENSMUSG00000097930.3	novel	2057	7	NA	NA	-17836	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.5	27	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCACAGTTCTGTTGGAT	4792	False	NA	NA	False	NA	NA	NA	23071124	23014758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23015996_23028918_23029070_23040703_23040806_23040913_23041034_23070872
55563	chr11	-	1318	1	ISM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	2194	9	1950	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	83	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGGGATTGTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	120470256	120468938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120468900_120470300
55566	chr5	+	1139	5	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	2	0	intron_retention	FALSE	canonical	3	22	junction_1	256.087265399902	12	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	124254153	124256259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124254675_124255038_124255257_124255333_124255452_124255892_124255963_124256047
55567	chr15	-	371	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	0	7	0	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTAACCTGCTCGTGTCA	NA	False	NA	NA	False	NA	NA	NA	90648859	90648488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_90648500_90648900
55568	chr4	-	1138	11	NNC	ENSMUSG00000028559.18	novel	2604	20	NA	NA	5463	1072	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	126.746834279993	1	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGAGCCTCACTAGAGC	NA	False	NA	NA	False	NA	NA	NA	108959765	108920562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925555_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108959693
55569	chr2	-	1190	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-72	175	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824693	28823446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28823731_28823787
55571	chr16	+	2962	6	ISM	ENSMUSG00000022895.17	ENSMUST00000023612.17	3890	10	10238	4	-3718	2	3prime_fragment	FALSE	canonical	3	119	junction_3	13.1909059582729	114	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTCTTTGTAATGTTG	NA	False	NA	NA	False	NA	NA	NA	95513179	95522091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_95513331_95515380_95515465_95516010_95516230_95517077_95517342_95518891_95519011_95519966
55572	chr2	-	3000	2	FSM	ENSMUSG00000059555.7	ENSMUST00000081869.7	3255	2	246	9	119	-9	multi-exon	FALSE	canonical	3	13	junction_1	0	23	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATCTACCCACCCACCT	8508	False	NA	NA	False	NA	NA	NA	25086652	25082986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25085938_25086603
55573	chr16	-	3233	8	NIC	ENSMUSG00000004462.8	novel	2803	8	NA	NA	21	-4	combination_of_known_junctions	FALSE	canonical	3	22	junction_7	32.3772406836301	33	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACTCTTTTACTGTGCC	NA	False	NA	NA	False	NA	NA	NA	22676269	22631973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
55574	chr4	-	1907	12	NNC	ENSMUSG00000028776.15	novel	1952	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	75.5598389106167	443	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	130068595	130059396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061533_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
55575	chr16	-	4398	1	Intergenic	novelGene_3853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACCCTGAGCCAGTCTG	3543	False	NA	NA	False	NA	NA	NA	84581519	84577121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_84577100_84581500
55576	chr15	+	946	7	NNC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-29	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.172803252742	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAGATGGACTGGAG	446	False	NA	NA	False	NA	NA	NA	102391603	102407305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102391724_102395458_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
55577	chr9	-	787	1	Intergenic	novelGene_995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACTACAGCAACCTCCCA	NA	False	NA	NA	False	NA	NA	NA	21384923	21384136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_21384100_21384900
55578	chr11	+	1976	12	NNC	ENSMUSG00000007850.17	novel	2225	14	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	187.658208735416	1	99	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCTGTCTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	50269116	50277353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_50269255_50270294_50270451_50270647_50270792_50273363_50273547_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274718_50275470_50275564_50275967_50276018_50276603
55579	chr19	+	1181	7	NIC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	-1	intron_retention	FALSE	canonical	3	444	junction_1	242.862558296297	165	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTATTGTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	8700850	8703804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8700871_8701504_8701554_8701766_8702086_8702377_8702888_8703145_8703191_8703430_8703467_8703602
55580	chr8	+	4557	20	Antisense	novelGene_ENSMUSG00000031583.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTATATGGGCGGCC	3965	False	NA	NA	False	NA	NA	NA	33768837	33833656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_33770941_33774644_33774739_33775164_33775266_33778782_33778962_33782580_33782763_33784932_33785118_33795679_33795788_33800737_33800824_33806371_33806440_33807224_33807328_33807568_33807641_33809178_33809256_33810497_33810637_33812315_33812397_33814195_33814622_33819131_33819245_33824203_33824273_33826023_33826175_33833004_33833142_33833573
55581	chr17	+	1732	6	FSM	ENSMUSG00000041199.4	ENSMUST00000047273.3	1745	6	13	0	-2	0	multi-exon	FALSE	canonical	3	41	junction_1	16.0299719276111	163	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	NA	False	NA	NA	NA	25946703	25950438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25946822_25947176_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
55582	chrX	+	1277	7	NNC	ENSMUSG00000001964.15	novel	1595	6	NA	NA	3	-140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	103.892037979604	2	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTGATTCTTCCTACT	NA	False	NA	NA	False	NA	NA	NA	73298424	73301353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612_73300922_73300967
55583	chr11	-	1029	3	NIC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	3	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	10549	23	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9944	False	NA	NA	False	NA	NA	NA	69812209	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69808168_69809976_69810163_69811988
55585	chr9	-	3298	1	NIC	ENSMUSG00000059890.17	novel	6039	20	NA	NA	2526	-3407	mono-exon	FALSE	NA	NA	NA	NA	NA	4	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAAAGCTGTCAAGTTGT	7901	False	NA	NA	False	NA	NA	NA	44874297	44870999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44871000_44874300
55589	chr10	-	867	3	ISM	ENSMUSG00000061904.13	ENSMUST00000167455.8	891	5	1372	-220	1372	0	3prime_fragment	FALSE	canonical	3	3885	junction_2	346.5	41	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90954327	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_90952987_90953074_90953186_90953905
55590	chr7	+	834	4	ISM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	4775	2395	-29	323	3prime_fragment	FALSE	canonical	3	444	junction_1	36.3532055746884	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	NA	False	NA	NA	NA	100147318	100148832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_100147480_100147554_100147657_100147942_100148124_100148442
55591	chr12	-	2987	5	ISM	ENSMUSG00000033713.13	ENSMUST00000177451.8	2882	6	4190	-461	4190	461	3prime_fragment	FALSE	canonical	3	70	junction_2	10.256095748383	21	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTAGGGGCTTGGATGG	NA	False	NA	NA	False	NA	NA	NA	99355141	99160891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_99163073_99175719_99175826_99257495_99257561_99307680_99307794_99354619
55592	chr14	+	1561	1	Antisense	novelGene_ENSMUSG00000114533.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCATTTTTGCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	14059089	14060650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_14059100_14060600
55593	chr10	+	1421	6	NNC	ENSMUSG00000006498.17	novel	848	7	NA	NA	523	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	710.315310267208	1	69	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1410	False	NA	NA	False	NA	NA	NA	79696006	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79696029_79696657_79696808_79698274_79698376_79698486_79698644_79699085_79699777_79699895
55594	chr4	-	827	4	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	11773	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	318.435062279406	2	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	6586	False	NA	NA	False	NA	NA	NA	129216664	129203309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203680_129215867_129216033_129216145_129216262_129216488
55595	chr18	+	2769	15	NIC	ENSMUSG00000024302.17	novel	3860	25	NA	NA	699	-1444	combination_of_known_junctions	FALSE	canonical	1	3	junction_12	2.58429321644651	18	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGGTCTGTAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	23630590	23767390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_23630761_23668218_23668287_23678742_23678824_23702618_23702833_23716140_23716227_23723245_23723401_23726028_23726135_23728515_23728683_23730490_23730616_23735647_23735732_23754443_23754532_23755023_23755122_23758138_23758253_23764388_23764486_23766274
55597	chr11	-	459	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	31	1031	31	0	multi-exon	FALSE	canonical	3	5710	junction_1	0	9693	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2978	False	NA	NA	False	NA	NA	NA	53321623	53319779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53319978_53321362
55598	chr5	-	697	1	Antisense	novelGene_ENSMUSG00000029438.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGTTCCTCTTCCCCTT	NA	False	NA	NA	False	NA	NA	NA	123495676	123494979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_123495000_123495700
55601	chr19	-	1725	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-44	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1389.69134151845	1	88	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATTCATTGCCTGTGA	NA	False	NA	NA	False	NA	NA	NA	15902338	15882495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15882781_15883121_15883516_15884293_15884432_15886664_15886794_15892227_15892401_15894455_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
55602	chr12	-	1704	11	NNC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	-1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	420.27539780482	1	78	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGTATATGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	36206786	36141839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36142318_36154260_36154400_36157494_36157642_36159703_36159862_36163962_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
55603	chr19	+	3755	13	ISM	ENSMUSG00000041180.14	ENSMUST00000047247.12	4731	21	44254	10	-6244	-7	3prime_fragment	FALSE	canonical	3	10	junction_2	6.79613860953409	20	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTCAGGCTTCAGTTCA	NA	False	NA	NA	False	NA	NA	NA	36576322	36598525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_36576436_36576995_36577120_36578831_36578929_36581649_36581758_36582567_36582701_36583785_36583875_36586664_36586824_36588763_36588839_36589543_36589632_36589716_36589824_36591747_36591864_36592899_36593044_36596123
55604	chr11	+	1500	10	NNC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	-20	-2807	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	422.450464624822	1	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATATTCTAAATATCT	NA	False	NA	NA	False	NA	NA	NA	102919390	102956931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943155_102946023_102946116_102947208_102947267_102950903_102951075_102954633_102954802_102955555_102955694_102956573
55605	chr2	-	1186	2	FSM	ENSMUSG00000027079.16	ENSMUST00000138231.2	1208	2	23	-1	-11	-1	multi-exon	FALSE	canonical	2	16	junction_1	0	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTATGATTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84557597	84553466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84554562_84557506
55608	chr8	-	3254	5	Antisense	novelGene_ENSMUSG00000079038.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	114	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCCCCGGAAGAGCCCG	NA	False	NA	NA	False	NA	NA	NA	69757555	69723754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69723842_69743911_69743975_69752904_69753029_69753406_69753472_69754640
55609	chr11	+	1672	15	Antisense	novelGene_ENSMUSG00000020516.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAACACTCCTGCCATGT	NA	False	NA	NA	False	NA	NA	NA	86396590	86435445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_86397012_86397619_86397725_86402414_86402492_86402649_86402714_86403631_86403740_86404125_86404216_86404371_86404462_86406914_86407018_86408408_86408466_86410716_86410865_86423596_86423665_86424849_86424973_86426236_86426286_86434755_86434871_86435391
55611	chr17	+	2007	6	Antisense	novelGene_ENSMUSG00000062012.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTCGAGCCCCGTCCAGG	4175	False	NA	NA	False	NA	NA	NA	23794822	23804514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_23796088_23799087_23799207_23799744_23799839_23799934_23800232_23803783_23803908_23804406
55612	chr9	-	2196	1	Antisense	novelGene_ENSMUSG00000032305.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACGGGGGCCTCTGACAT	NA	False	NA	NA	False	NA	NA	NA	57450466	57448270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_57448300_57450500
55614	chr12	+	4091	20	ISM	ENSMUSG00000063450.15	ENSMUST00000085280.12	7335	41	40433	25	31	-5	3prime_fragment	FALSE	canonical	1	1	junction_10	7.07850712777029	17	50	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCATTAAAAAAAAAAAAAAA	7461	False	NA	NA	False	NA	NA	NA	76118820	76157669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_76119058_76121211_76121371_76122515_76122683_76134524_76134688_76141054_76141243_76141815_76141967_76142265_76142449_76143643_76143782_76144657_76144853_76146003_76146287_76146801_76146871_76147765_76147906_76149741_76149845_76150520_76150724_76151738_76151940_76152762_76152892_76154257_76154450_76154917_76154990_76155640_76155685_76156595
55615	chr11	+	1431	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	3	-248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5622.5	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGACAACAACAGCAAAAAG	3038	False	NA	NA	False	NA	NA	NA	75623741	75647450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623922_75642706_75642907_75646399
55616	chr16	-	2309	8	NNC	ENSMUSG00000000386.17	novel	2790	11	NA	NA	45	-35	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	2.49079939630896	22	20	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTAGCGCTTCCAATAA	NA	False	NA	NA	False	NA	NA	NA	97258647	97248271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_97249573_97251567_97251718_97253972_97254052_97255224_97255424_97256289_97256429_97256688_97256844_97257421_97257560_97258499
55618	chr15	+	977	10	NNC	ENSMUSG00000056851.15	novel	3222	14	NA	NA	38	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	203.838231672466	3	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGAGCTTTTTCTTTGT	513	False	NA	NA	False	NA	NA	NA	102391670	102407317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102391724_102392600_102392676_102394334_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923_102407086_102407151
55619	chr14	-	1264	9	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1771.66572397278	1	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8749	False	NA	NA	False	NA	NA	NA	52341461	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312763_52312804_52312838_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321875_52341345
55620	chr7	+	995	8	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	935.837047563216	40	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8530	False	NA	NA	False	NA	NA	NA	27869133	27878694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27869244_27873928_27874017_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
55623	chr15	-	2527	2	NIC	ENSMUSG00000022552.17	novel	835	4	NA	NA	1	76	intron_retention	FALSE	canonical	3	126	junction_1	0	2	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGCTGGCGGGATTCCCC	8115	False	NA	NA	False	NA	NA	NA	76235309	76231163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76232636_76234254
55626	chr11	+	3927	5	ISM	ENSMUSG00000020689.5	ENSMUST00000127140.3	4375	11	21388	-636	21388	-27	3prime_fragment	FALSE	canonical	2	8	junction_4	3.11247489949718	15	92	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAATTAAATGTGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	104549602	104561275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_104549772_104550861_104550963_104553154_104553275_104556291_104556459_104557905
55629	chr10	+	2124	13	NNC	ENSMUSG00000004929.13	novel	2832	13	NA	NA	-24	-354	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	151.607772448073	21	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCACACAGGGGCACCCTG	5518	False	NA	NA	False	NA	NA	NA	80905936	80918039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917983
55630	chr9	+	1515	4	FSM	ENSMUSG00000025647.17	ENSMUST00000198591.5	515	4	17	-1017	17	-5	multi-exon	FALSE	canonical	0	0	junction_1	122.37192851667	22	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGCTTCCCCTTTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	108881938	108886787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108882049_108885045_108885162_108885354_108885574_108885717
55633	chr6	+	2609	15	FSM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	-209	9	-14	-9	multi-exon	FALSE	canonical	2	193	junction_5	41.0390555645796	63	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCATGATTCTGTTATT	NA	False	NA	NA	False	NA	NA	NA	35154341	35182579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259
55634	chr10	+	2214	13	NIC	ENSMUSG00000020246.14	novel	3422	15	NA	NA	-92	-1917	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	26.1433016702601	1	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATATGGATTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	82534952	82575312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_82535141_82536752_82536902_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
55635	chr7	-	2424	5	NNC	ENSMUSG00000074282.11	novel	2599	6	NA	NA	-1	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3.41869858279434	19	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTAAAATACATTTCTT	NA	False	NA	NA	False	NA	NA	NA	24016050	24001253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_24003299_24008495_24008623_24010889_24010929_24011806_24011921_24015951
55636	chr3	+	719	3	ISM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	218	3492	3	726	5prime_fragment	FALSE	canonical	3	1627	junction_1	94.5	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCACCAGGTACAGCTT	NA	False	NA	NA	False	NA	NA	NA	96079865	96081388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96079924_96080286_96080416_96080856
55637	chr3	+	1478	3	NIC	ENSMUSG00000087260.6	novel	743	4	NA	NA	21	0	intron_retention	FALSE	canonical	3	1062	junction_1	68.5	4	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3172	False	NA	NA	False	NA	NA	NA	107186335	107191398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_107187248_107189224_107189343_107190950
55638	chr7	+	997	3	ISM	ENSMUSG00000030922.13	ENSMUST00000106516.2	1069	4	9565	2	9542	1	3prime_fragment	FALSE	canonical	3	56	junction_1	6	178	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTTGTTTTGTTGATT	NA	False	NA	NA	False	NA	NA	NA	119508895	119515977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_119509186_119513395_119513489_119515363
55639	chr11	+	3654	14	NNC	ENSMUSG00000020721.17	novel	6218	32	NA	NA	1381	-17876	intron_retention	FALSE	canonical	0	0	junction_2	54.8996933630867	4	111	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTCCCCCATACCCTCCC	NA	False	NA	NA	False	NA	NA	NA	107440174	107519044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107440228_107465763_107465996_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360
55640	chr7	+	1187	10	FSM	ENSMUSG00000003423.16	ENSMUST00000107811.4	1072	10	-119	4	-119	2	multi-exon	FALSE	canonical	3	17	junction_1	115.619106456406	77	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGCTCCAGACAATGATG	NA	False	NA	NA	False	NA	NA	NA	44805247	44809485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44805480_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
55641	chr11	-	1757	13	FSM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	18	8	18	-4	multi-exon	FALSE	canonical	3	193	junction_4	34.6180548590215	525	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCATGTTGCAGCTTC	8321	False	NA	NA	False	NA	NA	NA	82799219	82791601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
55643	chr6	+	2242	1	Intergenic	novelGene_4190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	49	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTCTCGTGTAATCTGT	NA	False	NA	NA	False	NA	NA	NA	79610770	79613012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_79610800_79613000
55644	chr7	-	1213	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	-4	intron_retention	FALSE	canonical	3	11064	junction_6	2083.86483886711	254	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTACGATGTGTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	44778159	44774985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776517_44776632_44776699_44776919_44776993_44778123
55645	chr19	-	4745	15	FSM	ENSMUSG00000025185.15	ENSMUST00000026190.14	3738	15	41	-1048	0	1048	multi-exon	TRUE	canonical	1	2	junction_12	2.28124563181019	11	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATATTTTCAATGGAAGT	NA	False	NA	NA	False	NA	NA	NA	42601211	42581372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_42583844_42585936_42586049_42586383_42586521_42587139_42587256_42588315_42588560_42590611_42590775_42591625_42591794_42592293_42592449_42592570_42592755_42593245_42593466_42593684_42593724_42595008_42595215_42595992_42596172_42596690_42596987_42601156
55646	chrX	+	1589	8	NIC	ENSMUSG00000023092.17	novel	2770	8	NA	NA	-27	117	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	57.513796037941	1	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTTGGGGCTCAGTCTG	NA	False	NA	NA	False	NA	NA	NA	55777119	55837712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55836598_55836799_55837203
55647	chr9	-	2875	12	NNC	ENSMUSG00000032468.12	novel	2820	12	NA	NA	-2	-189	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	67.4797796466247	1	118	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGATTGTTTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	99450954	99401045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415158_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
55648	chr11	-	1124	3	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	2281	18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	517.5	1	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTATTTGTCAGCTAT	NA	False	NA	NA	False	NA	NA	NA	120532188	120530223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120531012_120531059_120531175_120531967
55649	chr6	+	1366	12	NNC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	317.12207936872	2	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5421	False	NA	NA	False	NA	NA	NA	83031709	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83031814_83031891_83032030_83032109_83032192_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
55652	chr7	-	1778	11	ISM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	11041	43	574	-43	3prime_fragment	FALSE	canonical	3	442	junction_5	35.1761282690406	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTATAAGTAAATAATTGT	NA	False	NA	NA	False	NA	NA	NA	27241596	27231467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513
55653	chr7	-	3447	1	NIC	ENSMUSG00000052281.15	novel	975	5	NA	NA	-2041	-404	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGCTATTCACAGGTTG	NA	False	NA	NA	False	NA	NA	NA	142546556	142543109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_142543100_142546600
55654	chr7	-	2440	2	ISM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	86323	6	13155	-6	3prime_fragment	FALSE	canonical	3	682	junction_1	0	2	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTTGTGTTTATTTTTC	4646	False	NA	NA	False	NA	NA	NA	80366841	80361336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_80363694_80366758
55655	chr6	+	2303	17	NNC	ENSMUSG00000029802.14	novel	2178	16	NA	NA	2	-62	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	62.5208715150389	163	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	58617546	58669434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58650990_58651176_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
55656	chr12	-	834	6	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	334	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3048.2090479493	1	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTCTGAGTGTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	111638382	111635797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111635928_111636658_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
55657	chr17	-	820	5	NNC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	3	61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	924.059116074291	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAATAAAGATGATGCTGA	3407	False	NA	NA	False	NA	NA	NA	71297522	71280959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71281237_71281364_71281492_71282453_71282616_71284042_71284242_71297467
55658	chr10	+	1133	7	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2504.20549054763	1	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2203	False	NA	NA	False	NA	NA	NA	81012486	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015274_81018158
55659	chr13	+	1691	11	ISM	ENSMUSG00000041817.15	ENSMUST00000042517.8	4547	13	20197	6368	20197	-6368	internal_fragment	FALSE	canonical	3	256	junction_8	16.6856225535639	8	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTGAGTACTTGATGT	NA	False	NA	NA	False	NA	NA	NA	97228347	97259655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_97228461_97230098_97230199_97230569_97230656_97234047_97234220_97243461_97243642_97246530_97246660_97247803_97247911_97250146_97250187_97250616_97250768_97254882_97255040_97259199
55660	chr17	-	2174	6	NIC	ENSMUSG00000024218.14	novel	2207	6	NA	NA	29	-9	combination_of_known_junctions	FALSE	canonical	3	5	junction_5	59.2702286143727	436	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTTCAAGACAGGGTT	NA	False	NA	NA	False	NA	NA	NA	28128187	28120110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127218_28127743
55662	chr15	+	1336	4	NNC	ENSMUSG00000042406.9	novel	659	4	NA	NA	-26	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	630.303630535845	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCTATGTGGGTTTTCAG	4458	False	NA	NA	False	NA	NA	NA	80139697	80141739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140723_80140834_80141502_80141574
55665	chr8	+	1844	4	Antisense	novelGene_ENSMUSG00000004319.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGAAGCTGCAGGAGTCG	NA	False	NA	NA	False	NA	NA	NA	61389406	61436280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_61390524_61391583_61391682_61394290_61394448_61435808
55666	chr9	-	2259	8	NNC	ENSMUSG00000032064.18	novel	5719	20	NA	NA	-305	787	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	16.8183573174416	24	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTATCTGCTCCTTGCTC	NA	False	NA	NA	False	NA	NA	NA	50639672	50603980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085_50639607_50639654
55667	chr8	+	1895	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	-34	7	-34	-7	multi-exon	FALSE	canonical	3	90	junction_1	7.03957069398096	515	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTCTGCCTGGTATTGGA	NA	False	NA	NA	False	NA	NA	NA	124138128	124148747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
55668	chr2	+	1256	7	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	571.410729880199	2197	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	145745170	145758345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145755845_145755970_145757453_145757600_145757723
55669	chr10	+	1698	5	Fusion	ENSMUSG00000051716.7_ENSMUSG00000039994.16	novel	2320	13	NA	NA	1084	-20	multi-exon	FALSE	canonical	0	0	junction_4	162.148658643851	2	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCACCACCATGTCTGTA	191	False	NA	NA	False	NA	NA	NA	128086571	128091494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_128086682_128087538_128087753_128087861_128087958_128088060_128088148_128090303
55671	chr10	+	2365	1	Antisense	novelGene_ENSMUSG00000058396.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACCAAAAAACCCAACAAC	NA	False	NA	NA	False	NA	NA	NA	127585487	127587852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_127585500_127587900
55672	chr2	-	2602	8	NNC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	-1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.1252474867221	1	142	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATAGCTTCCTATTCCA	NA	False	NA	NA	False	NA	NA	NA	91515598	91504969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91506809_91509078_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495
55673	chr13	-	1319	1	FSM	ENSMUSG00000075053.4	ENSMUST00000099736.4	853	1	-36	-430	-36	430	mono-exon	FALSE	NA	NA	NA	NA	NA	5	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATGGATGAATAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18206214	18204895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_18204900_18206200
55674	chr3	-	1740	2	FSM	ENSMUSG00000037152.12	ENSMUST00000145572.3	311	2	-1454	25	29	-2	multi-exon	FALSE	canonical	3	5471	junction_1	0	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGTAGACGGAGTCACT	NA	False	NA	NA	False	NA	NA	NA	51316356	51312900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_51313041_51314756
55675	chr5	+	1581	10	NIC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	-7	-18	intron_retention	FALSE	canonical	3	1115	junction_6	97.4095338452588	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGCCTTTGGATGTTCGT	NA	False	NA	NA	False	NA	NA	NA	134611603	134627164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
55676	chr5	+	1996	11	FSM	ENSMUSG00000056367.15	ENSMUST00000128727.8	2031	11	30	5	1	-5	multi-exon	FALSE	canonical	3	28	junction_1	35.2080956599473	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATAACTGTTCCTTGTG	NA	False	NA	NA	False	NA	NA	NA	25965024	26055681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_25965127_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
55677	chr4	-	1202	7	NIC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	-42	5	intron_retention	FALSE	canonical	3	786	junction_4	127.076639167953	4493	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTCTTTTTTTTTTTGT	5919	False	NA	NA	False	NA	NA	NA	139079664	139074750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_139075117_139075231_139075309_139075631_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
55678	chr2	-	992	4	NNC	ENSMUSG00000016257.16	novel	1553	6	NA	NA	36	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.877155981875	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTCATCACTCTTAACA	NA	False	NA	NA	False	NA	NA	NA	174314648	174306891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174307616_174310105_174310181_174311129_174311299_174314624
55679	chr5	+	1085	5	NNC	ENSMUSG00000025532.14	novel	1492	6	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	160.343966210145	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGTGCCACCATACCT	NA	False	NA	NA	False	NA	NA	NA	130058127	130089628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071068_130088821
55680	chr5	+	1481	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	-60	1	44	0	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	NA	False	NA	NA	NA	48529714	48546187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
55681	chr6	+	1434	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	0	41	0	-40	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	85	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAACTAGGTGTTTATGGA	NA	False	NA	NA	False	NA	NA	NA	124908394	124913067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
55685	chr7	+	2606	2	Antisense	novelGene_ENSMUSG00000049580.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGCAACAGGCCAGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	97999879	98010596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98002335_98010445
55686	chr4	+	1375	11	NIC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_3	153.289954008735	881	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	107171565	107217020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_107171660_107172959_107173040_107176138_107176303_107192845_107192905_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
55687	chr9	-	880	2	ISM	ENSMUSG00000098161.2	ENSMUST00000182885.2	388	4	1749	-766	1749	766	3prime_fragment	FALSE	canonical	3	32	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACAGTCTGCATTGACTC	NA	False	NA	NA	False	NA	NA	NA	118233418	118232398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_118233232_118233371
55689	chr1	+	2015	7	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	32	16420	32	5673	5prime_fragment	FALSE	canonical	3	1402	junction_6	172.107524530452	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTACATTAAGGCTCGC	3179	False	NA	NA	False	NA	NA	NA	180396525	180412399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294
55691	chr18	+	1543	11	FSM	ENSMUSG00000038903.14	ENSMUST00000043929.11	1618	11	75	0	-29	0	multi-exon	FALSE	canonical	3	15	junction_1	8.64869932417586	117	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	70058611	70102555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
55692	chr1	-	1919	4	FSM	ENSMUSG00000079610.10	ENSMUST00000207843.2	2646	4	46	681	46	-94	multi-exon	FALSE	canonical	3	9	junction_3	29.9369708257569	23	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTCTTTCATGCAATGA	7072	False	NA	NA	False	NA	NA	NA	36586254	36577268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36585990
55693	chr2	-	1961	11	NNC	ENSMUSG00000017707.10	novel	3683	10	NA	NA	0	-1405	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.952253886333	37	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGATATTTAGTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	163487051	163466596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163466861_163467177_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
55694	chr4	-	1049	8	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_7	877.288982709616	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	117744523	117741526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743892_117744366
55695	chr11	-	2951	8	NNC	ENSMUSG00000041189.10	novel	2155	11	NA	NA	588	-4	intron_retention	TRUE	canonical	1	2	junction_7	7.9436792996902	186	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCATTTTTGTCTATTT	9937	False	NA	NA	False	NA	NA	NA	69686143	69674865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684926
55696	chr3	-	1097	6	FSM	ENSMUSG00000028066.16	ENSMUST00000192365.2	802	6	-59	-236	2	0	multi-exon	FALSE	canonical	0	0	junction_2	418.733614604799	2262	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	NA	False	NA	NA	NA	88317631	88301449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88301878_88303020_88303118_88303211_88303408_88306441_88306543_88307017_88307124_88317462
55698	chr5	-	677	6	Antisense	novelGene_ENSMUSG00000064841.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAAGGCAGCGGCTTCCG	NA	False	NA	NA	False	NA	NA	NA	121346892	121342596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121342614_121343466_121343725_121343814_121343918_121344728_121344862_121346520_121346637_121346842
55699	chr8	-	1747	7	NNC	ENSMUSG00000031750.16	novel	1709	7	NA	NA	-13280	1	at_least_one_novel_splicesite	TRUE	canonical	3	22	junction_6	7.54247233265651	151	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTTGCATCTCTGATGG	NA	False	NA	NA	False	NA	NA	NA	111482610	111468470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111482403
55700	chr8	-	1554	7	Antisense	novelGene_ENSMUSG00000098483.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	25	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGGAGCCATGGAAGGTG	NA	False	NA	NA	False	NA	NA	NA	118187353	118179816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_118179957_118180558_118180609_118181637_118181784_118182375_118182482_118183621_118183695_118186065_118186386_118186634
55702	chr17	+	2193	9	NIC	ENSMUSG00000024101.16	novel	1831	11	NA	NA	33	0	intron_retention	FALSE	canonical	0	0	junction_1	41.9076365356005	1	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	66418680	66426442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66418727_66420857_66421012_66422665_66423096_66423254_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
55704	chr12	-	673	1	Intergenic	novelGene_4420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACACACAGAAACCCTGT	NA	False	NA	NA	False	NA	NA	NA	80533705	80533032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_80533000_80533700
55705	chr6	-	1197	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	31	0	31	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	2	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
55706	SIRV6	+	912	9	NNC	SIRV6A	novel	1088	9	NA	NA	22	0	intron_retention	FALSE	canonical	0	0	junction_4	8239.38325968637	3	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1159	11331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_1845_2000_2590_2621_2740_2829_3106_3165_10724_10819_11031
55707	chr1	+	772	11	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	1206	junction_6	1448.71477178912	181	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
55708	chr8	+	805	5	NNC	ENSMUSG00000031950.8	novel	1677	4	NA	NA	73	173	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1212.84734715462	16	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACGGTGTGACCATGTCCG	NA	False	NA	NA	False	NA	NA	NA	112667462	112679547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946_112679320_112679366
55710	chr1	+	1996	9	NNC	ENSMUSG00000000544.15	novel	2227	8	NA	NA	3	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	86.0490412497432	3	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGAAATTCACTTTTCT	NA	False	NA	NA	False	NA	NA	NA	165957988	165994066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992791_165992917_165993532_165993728
55711	chr19	-	1288	4	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	596.382613950325	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTGCTGTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	7183643	7175574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176625_7181422_7181522_7181754_7181817_7183566
55713	chr17	+	2688	15	NNC	ENSMUSG00000041354.17	novel	3252	18	NA	NA	-231	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	42.0427988932173	1	124	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAAACACTACCTGAACC	5473	False	NA	NA	False	NA	NA	NA	34150794	34156643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152736_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156040
55714	chrX	+	2471	4	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	-17	37515	-17	2990	5prime_fragment	FALSE	canonical	3	487	junction_1	64.3238334954903	2	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGAGAATTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	158315697	158337875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239
55715	chr3	-	1383	7	NIC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	637	junction_1	38.7298334620742	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2074	False	NA	NA	False	NA	NA	NA	107893737	107889017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107893426_107893673
55716	chr6	-	1517	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	-19	11	-19	-11	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	1	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAGACTGAGGCATTTC	3442	False	NA	NA	False	NA	NA	NA	125263024	125255247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
55717	chr16	-	2088	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	-15	-64	-15	64	multi-exon	FALSE	canonical	3	39	junction_1	7.71362431027076	209	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTTCCTCATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	87237476	87230230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
55718	chr14	+	1414	13	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	-2	-633	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	749.973888434346	1	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATACTCTTGTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	45567299	45586529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567394_45568290_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572475_45578104_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584261_45586039
55720	chr2	-	1590	7	NNC	ENSMUSG00000027194.17	novel	3408	20	NA	NA	-1606	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	75.0199973340442	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGATCTTTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	94194768	94158262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94158831_94160862_94161017_94163137_94163379_94189116_94189283_94192684_94192910_94193044_94193123_94194610
55721	chr4	-	2754	16	NIC	ENSMUSG00000029032.13	novel	2860	15	NA	NA	12	-43	combination_of_known_junctions	FALSE	canonical	2	9	junction_15	8.43958924750883	32	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTACATGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	154384337	154362985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154377288_154377400_154384281
55722	chr16	+	1167	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-1	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1773.97861017967	2	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACCAAAACCAGTTGTCAC	NA	False	NA	NA	False	NA	NA	NA	84571009	84619727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606347_84609860_84609987_84612056_84612157_84613153_84613275_84618147_84618191_84619674
55723	chrX	+	1898	4	FSM	ENSMUSG00000045330.9	ENSMUST00000051414.2	1970	4	64	8	64	-8	multi-exon	FALSE	canonical	1	3	junction_2	2.62466929133727	29	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCACTCACCAAATCTTTT	NA	False	NA	NA	False	NA	NA	NA	61330811	61335676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_61330842_61332956_61333046_61333767_61333841_61333970
55724	chr7	+	1410	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	42	0	42	0	multi-exon	FALSE	canonical	3	441	junction_1	195	3195	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	False	NA	NA	False	NA	NA	NA	81412714	81419239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_81412805_81417274_81417472_81418116
55725	chr10	+	1555	2	ISM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	-27	-1	-27	0	intron_retention	FALSE	canonical	3	275	junction_1	0	57	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCAGGCTTTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	128583730	128602433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_128583868_128601015
55726	chr6	-	2333	12	NNC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	105.178871648836	1	122	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120334309	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308910_120308993_120311729_120311911_120315065_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
55728	chr18	+	1694	10	NIC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	4	1087	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	349.94394612866	1	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTTTTCTGATACATT	NA	False	NA	NA	False	NA	NA	NA	68433474	68453402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_68433695_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296
55729	chr5	+	1661	13	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-2	732	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	286.639000602965	1	65	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTACTTAGAACAATACAA	NA	False	NA	NA	False	NA	NA	NA	31652108	31668935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663570_31666690_31666751_31668175
55730	chrX	+	879	7	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	702.017667552289	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGCCTGACAATTTTT	NA	False	NA	NA	False	NA	NA	NA	74557929	74578543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513_74577744_74578429
55732	chr7	-	1308	10	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	0	-612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	640.896324506103	3	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59654859	59632861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635583_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
55733	chr8	+	2579	2	Intergenic	novelGene_1579	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	8	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTGCTGTTGTTTT	1734	False	NA	NA	False	NA	NA	NA	15087976	15090696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_15089392_15089532
55734	chr11	-	925	10	ISM	ENSMUSG00000018677.10	ENSMUST00000153395.8	1564	11	26	710	7	-64	5prime_fragment	FALSE	canonical	3	4398	junction_1	191.832746081413	5	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCCTTCGATGTGGTGAA	7752	False	NA	NA	False	NA	NA	NA	102298306	102294680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
55737	chr6	+	629	1	Intergenic	novelGene_4225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTCAATGCAGTTTTTA	2546	False	NA	NA	False	NA	NA	NA	115547238	115547867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_115547200_115547900
55738	chr9	+	1235	4	Antisense	novelGene_ENSMUSG00000032553.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCCGCTGGAACGCC	NA	False	NA	NA	False	NA	NA	NA	103066285	103069501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_103066658_103066902_103067621_103068267_103068323_103069411
55739	chr2	+	2720	9	NNC	ENSMUSG00000014959.13	novel	1941	10	NA	NA	24597	19254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	172	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCCACTGTGAGGAGTG	9685	False	NA	NA	False	NA	NA	NA	70542753	70562234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_70544509_70546954_70547064_70548125_70548240_70551420_70551553_70551900_70552070_70552248_70552432_70554344_70554424_70555816_70555916_70562154
55740	chr2	-	1079	9	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-22	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1479.97807732919	1	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAGTCTCATTATTAA	9548	False	NA	NA	False	NA	NA	NA	10085277	10060844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064505_10068264_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
55741	chr15	+	1970	13	FSM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	7	0	7	0	multi-exon	FALSE	canonical	3	173	junction_9	26.1878894826512	119	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	4390	False	NA	NA	False	NA	NA	NA	79113588	79133666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
55743	chr13	-	692	1	Intergenic	novelGene_1529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACATTGAATCTTGGT	7099	False	NA	NA	False	NA	NA	NA	106981312	106980620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_106980600_106981300
55744	chr6	-	1082	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	31	2064	-21	1	multi-exon	FALSE	canonical	3	64	junction_2	22	816	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTTTTGGTCTGCTT	-4	True	NA	NA	False	NA	NA	NA	13871486	13869797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_13870740_13871054_13871146_13871437
55746	chr1	-	1534	7	Antisense	novelGene_ENSMUSG00000026520.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	520	24	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGCAGCCTCCGGTTGGCC	NA	False	NA	NA	False	NA	NA	NA	180735653	180731860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180732095_180732307_180732385_180733441_180733617_180733725_180733948_180734157_180734250_180734351_180734454_180735021
55747	chr1	+	2582	10	NNC	ENSMUSG00000034292.14	novel	3474	15	NA	NA	6618	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	17.1363450300131	42	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTATTTTTCCTATAAGTG	NA	False	NA	NA	False	NA	NA	NA	91429033	91457012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_91429147_91433144_91433217_91435214_91435306_91447297_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
55748	chr19	+	2358	18	Antisense	novelGene_ENSMUSG00000024943.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	101	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGACGATTGAGCCCTCGA	NA	False	NA	NA	False	NA	NA	NA	23192084	23251017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_23192104_23195735_23195895_23205537_23205661_23206278_23206405_23208923_23209091_23209181_23209359_23211327_23211460_23213237_23213333_23216247_23216349_23219997_23220151_23221216_23221475_23232040_23232108_23234859_23235013_23237009_23237151_23238693_23238830_23240965_23241137_23246072_23246233_23250997
55749	chr11	-	2749	14	FSM	ENSMUSG00000017417.15	ENSMUST00000017561.15	2881	14	127	5	82	-5	multi-exon	FALSE	canonical	3	23	junction_9	6.65462423196374	31	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTCCGTCGCGCCTGC	6987	False	NA	NA	False	NA	NA	NA	97877143	97814068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97815434_97816638_97816800_97819259_97819296_97823032_97823166_97824800_97824862_97829355_97829438_97831638_97831735_97844708_97844809_97845576_97845696_97846226_97846350_97846924_97846995_97847248_97847393_97869328_97869508_97877063
55750	chr3	-	2358	4	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	965	-1479	-25	16	3prime_fragment	FALSE	canonical	3	141	junction_3	77.2801541291309	46	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAATTGGCATGGAATAT	NA	False	NA	NA	False	NA	NA	NA	102073281	102064016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088
55753	chr8	+	1438	4	NNC	ENSMUSG00000005470.9	novel	1788	4	NA	NA	103	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	259.743890955858	2	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTCATCTAGATTGTTT	6026	False	NA	NA	False	NA	NA	NA	84682445	84696812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84682567_84691667_84691776_84694480_84694640_84695762
55754	chr13	-	1018	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	8	-473	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	236	1	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314329	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311979_34313264_34313338_34314159
55755	chr17	-	1067	5	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	664.727152672433	11	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTGTGGTCTAGTAT	9938	False	NA	NA	False	NA	NA	NA	29482911	29469805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29470349_29470465_29470700_29471223_29471293_29480710_29480866_29482845
55756	chr5	-	496	1	Antisense	novelGene_ENSMUSG00000018604.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAGAGCACCTCACTTT	NA	False	NA	NA	False	NA	NA	NA	119812625	119812129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_119812100_119812600
55757	chr9	+	2358	1	ISM	ENSMUSG00000066415.5	ENSMUST00000085177.5	4889	2	21912	915	21912	-915	mono-exon	FALSE	NA	NA	NA	NA	NA	81	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCTTAGTTGTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	100978726	100981084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_100978700_100981100
55758	chr7	-	958	7	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-2	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9655.38954274877	1	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATTTAAGGGGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	126398283	126394421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395789_126395819_126396810_126396949_126398216
55759	chr16	+	2476	11	NNC	ENSMUSG00000004069.18	novel	2505	11	NA	NA	-5	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	249.886474223796	1	152	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATCAAAATTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	4501972	4525547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511273_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
55760	chr7	-	1284	1	ISM	ENSMUSG00000054753.10	ENSMUST00000205185.2	3361	10	8550	0	8550	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	6849	False	NA	NA	False	NA	NA	NA	3205781	3204497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_3204500_3205800
55762	chr2	-	1947	3	Antisense	novelGene_ENSMUSG00000055612.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTTCCAATTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	72315049	72311678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_72312857_72313698_72314360_72314941
55763	chr14	-	1990	6	NNC	ENSMUSG00000021930.15	novel	4002	5	NA	NA	76	423	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	67.8751795577735	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGTGATTTTCATGGT	NA	False	NA	NA	False	NA	NA	NA	61794131	61771330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61792219_61792301_61793969
55764	chr11	+	1408	3	NIC	ENSMUSG00000018858.16	novel	2596	6	NA	NA	0	-5	intron_retention	FALSE	canonical	3	10	junction_1	557	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGAGCCTGTTTCCAGTGA	NA	False	NA	NA	False	NA	NA	NA	115294577	115301740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115294787_115300305_115301228_115301463
55766	chr9	+	1451	3	ISM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	1	2164	1	-353	intron_retention	FALSE	canonical	3	72	junction_2	3	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATTGCAGAAAACAAAACAA	NA	False	NA	NA	False	NA	NA	NA	50679536	50682484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_50679756_50679987_50680145_50681409
55767	chr6	+	1629	7	FSM	ENSMUSG00000030271.15	ENSMUST00000136263.4	1601	7	-24	-4	3	0	multi-exon	FALSE	canonical	3	33	junction_2	81.0445693567572	536	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2311	False	NA	NA	False	NA	NA	NA	113303935	113311149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113304324_113305325_113305574_113306106_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
55768	chr4	+	1433	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000056300.15	novel	314	3	NA	NA	-3	3413	multi-exon	FALSE	canonical	0	0	junction_1	134.525090596513	14	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146206938	146627265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207142_146365171_146365259_146502756_146502850_146597241_146597335_146603534_146603615_146613788_146613960_146616526_146616611_146619877_146620005_146626770
55769	chr8	-	1197	1	ISM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	10655	22	10655	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGGAAATAAAACACTAGA	NA	False	NA	NA	False	NA	NA	NA	43749318	43748121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43748100_43749300
55770	chr5	-	1242	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.456197445006	158	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATGAGAAACGTAGGAT	9977	False	NA	NA	False	NA	NA	NA	137598961	137594911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
55771	chr18	-	2124	14	NNC	ENSMUSG00000044201.11	novel	2121	14	NA	NA	-3	-9	intron_retention	FALSE	canonical	0	0	junction_1	67.7576607603596	1	91	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTAAACCAAAACCTCTAG	2798	False	NA	NA	False	NA	NA	NA	34884580	34866058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34866447_34866636_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878078_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884265_34884366
55772	chrX	-	1803	8	NIC	ENSMUSG00000087174.8	novel	1887	8	NA	NA	1	-16	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	41.0867673220904	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATGGAATTTTTATAA	NA	False	NA	NA	False	NA	NA	NA	104113692	104082438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104083419_104086735_104086911_104087607_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
55773	chr3	-	2433	20	NNC	ENSMUSG00000027709.10	novel	2455	19	NA	NA	21	2156	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	59.7672771993397	2	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGTTGCCACTGTCATG	NA	False	NA	NA	False	NA	NA	NA	36054737	36011304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_36011429_36014037_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
55774	chr9	-	1230	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	-12	14	-12	-14	multi-exon	FALSE	canonical	3	1085	junction_1	10	680	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAAAAAATTAATATGCT	3701	False	NA	NA	False	NA	NA	NA	96360740	96353003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96353906_96356010_96356059_96360460
55776	chr16	-	1587	12	NNC	ENSMUSG00000058240.15	novel	1727	12	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	687.345462721597	1	90	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCACTCTGAATTTCTCC	9189	False	NA	NA	False	NA	NA	NA	91525502	91486211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491185_91492148_91492248_91496064_91496177_91497961_91498094_91504112_91504168_91509032_91509156_91511636_91511715_91514291_91514364_91525445
55777	chr17	+	1277	2	Genic_Genomic	ENSMUSG00000061062.6	novel	1444	1	NA	NA	10	527	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAATATCTAATAA	NA	False	NA	NA	False	NA	NA	NA	78799020	78800981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_78799529_78800212
55778	chr16	-	1030	6	FSM	ENSMUSG00000023791.19	ENSMUST00000096109.11	993	6	-34	-3	-32	-1	multi-exon	FALSE	canonical	3	398	junction_3	17.8258239641258	464	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAACTGGTTAGTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	31918590	31903238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918287
55779	chr9	+	2289	2	ISM	ENSMUSG00000053716.10	ENSMUST00000172306.3	3213	3	2275	26	163	-23	3prime_fragment	FALSE	canonical	3	159	junction_1	0	43	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAAATATTATTTTTTC	160	False	NA	NA	False	NA	NA	NA	106248105	106252897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_106248335_106250837
55780	chr2	-	922	1	Intergenic	novelGene_2695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAGTTCTCACTATGTA	NA	False	NA	NA	False	NA	NA	NA	119743315	119742393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_119742400_119743300
55781	chr5	+	2172	5	FSM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	152	1659	152	201	multi-exon	FALSE	canonical	3	319	junction_1	32.7595405950694	311	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGAGGTTGGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	137744409	137758011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137757328
55782	chr1	+	2282	4	FSM	ENSMUSG00000026111.16	ENSMUST00000134184.2	730	4	-1173	-379	1	379	multi-exon	FALSE	canonical	3	468	junction_2	19.4307888557196	3	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGCTAAAATGTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	37469251	37477072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_37470658_37471631_37471753_37476242_37476383_37476457
55785	chr5	-	2269	1	Intergenic	novelGene_701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGAAGGAGAAGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	33784787	33782518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_33782500_33784800
55786	chr13	-	1145	6	Fusion	ENSMUSG00000069248.12_ENSMUSG00000052180.16	novel	1494	8	NA	NA	24473	-14	multi-exon	FALSE	canonical	0	0	junction_1	0	2	43	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGGTACTCCACTTTCA	NA	False	NA	NA	False	NA	NA	NA	34064680	34016341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_34016844_34017130_34017287_34020374_34020518_34021737_34021856_34022910_34023061_34064604
55787	chr4	+	1546	1	Intergenic	novelGene_1981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGGCACACACCTTTAATC	1542	False	NA	NA	False	NA	NA	NA	133687846	133689392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_133687800_133689400
55789	chr5	+	2194	22	NIC	ENSMUSG00000039178.10	novel	2273	21	NA	NA	-2	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	24.8468323809108	98	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCTTCTTGTCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	53966993	54061076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_53967201_53986691_53986765_53987796_53987898_53988708_53988831_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
55790	chr5	+	2019	5	NIC	ENSMUSG00000053856.8	novel	1565	6	NA	NA	31	-7	intron_retention	FALSE	canonical	3	16	junction_4	4.32290411644765	76	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAATTCCAGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	31265693	31269863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31265766_31266230_31267053_31267521_31267664_31268456_31268524_31268947
55791	chrX	-	3061	6	NNC	ENSMUSG00000002006.13	novel	3625	6	NA	NA	26387	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1.01980390271856	43	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGACTTGTGTTCATTGC	NA	False	NA	NA	False	NA	NA	NA	72842188	72836962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72839527_72839706_72839818_72839981_72840084_72840435_72840499_72841799_72841899_72842066
55792	chr2	+	1456	1	NIC	ENSMUSG00000027076.11	novel	690	3	NA	NA	1374	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	28	False	NA	NA	False	NA	NA	NA	84659101	84660557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_84659100_84660600
55794	chr3	-	1498	13	FSM	ENSMUSG00000068921.15	ENSMUST00000090938.11	4760	13	443	2819	-20	13	multi-exon	FALSE	canonical	3	805	junction_4	46.7537134591705	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCAACAAGGAAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	88857278	88830928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
55795	chr1	-	1024	5	NIC	ENSMUSG00000058076.13	novel	3171	6	NA	NA	-18	241	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	373.85324660888	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTTGACTCTTTGGAAT	438	False	NA	NA	False	NA	NA	NA	170978190	170956734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_170957475_170966262_170966325_170971126_170971229_170973324_170973382_170978127
55796	chr10	-	1660	3	FSM	ENSMUSG00000045867.11	ENSMUST00000217809.2	1115	3	-19	-526	-19	7	multi-exon	FALSE	canonical	3	30	junction_2	28	216	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCGTGTCCATTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	95159446	95010600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_95011841_95158447_95158752_95159330
55797	chr10	-	1811	5	NNC	ENSMUSG00000075000.12	novel	583	5	NA	NA	43	-1	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	63.5349313370212	238	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTGTTGAGTATGACTT	NA	False	NA	NA	False	NA	NA	NA	67121041	67102468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_67103946_67105884_67105926_67107183_67107226_67111348_67111434_67120875
55798	chr5	+	2897	1	FSM	ENSMUSG00000081683.6	ENSMUST00000117102.4	3250	1	343	10	343	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	211	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTAGTTTGCTGCTAGTC	NA	False	NA	NA	False	NA	NA	NA	128678250	128681147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_128678200_128681100
55799	chr2	+	978	8	Antisense	novelGene_ENSMUSG00000077733.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCGCGTGCGCGGGAGCT	NA	False	NA	NA	False	NA	NA	NA	10060874	10085247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_10060940_10063793_10063904_10064311_10064471_10068099_10068160_10068251_10068398_10068916_10069125_10073422_10073566_10085160
55801	chr15	-	1592	1	Antisense	novelGene_ENSMUSG00000097587.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTACAAATCAGCCGGG	8362	False	NA	NA	False	NA	NA	NA	98883828	98882236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_98882200_98883800
55803	chr4	-	1161	10	NIC	ENSMUSG00000028391.17	novel	1440	11	NA	NA	0	-103	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	61.169063430689	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTCTGTGTGGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	62389111	62371973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_62372175_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
55804	chr12	+	1893	10	NIC	ENSMUSG00000047022.19	novel	2117	11	NA	NA	7	-10	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	19.7652894404981	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACATAAATATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	57277238	57543975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_57277398_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
55805	chr4	+	920	6	NNC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	0	237	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	9229.99602600131	4	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAACTTGGTGATTCATT	NA	False	NA	NA	False	NA	NA	NA	116542795	116556706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551039_116556367
55807	chr4	-	3257	12	FSM	ENSMUSG00000044254.7	ENSMUST00000049507.6	3521	12	248	16	248	-16	multi-exon	FALSE	canonical	1	3	junction_11	3.44016144153173	21	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCATCCGACTCAGAGG	NA	False	NA	NA	False	NA	NA	NA	106321278	106299541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_106300756_106301873_106302056_106303792_106303971_106304326_106304476_106304703_106304878_106306056_106306241_106307236_106307434_106311421_106311564_106311709_106311844_106314061_106314186_106316033_106316226_106320891
55809	chr14	+	1084	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	110	6	110	-6	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	2627	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAAGACATTTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	55253020	55261588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
55810	chr11	-	598	6	NNC	ENSMUSG00000020460.16	novel	791	6	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	canonical	2	81	junction_3	5336.27920558885	12	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCGTACTTAGTATTGT	NA	False	NA	NA	False	NA	NA	NA	29497861	29495854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_29496030_29496290_29496423_29496702_29496789_29497141_29497261_29497680_29497746_29497840
55812	chr9	-	1336	12	NNC	ENSMUSG00000032314.15	novel	1392	12	NA	NA	-46	76	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	491.569353959404	50	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTGGTGGCAGTCACCT	NA	False	NA	NA	False	NA	NA	NA	55419450	55361715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402900_55402929_55403025_55403108_55407301_55407449_55419314
55813	chr3	-	1604	11	ISM	ENSMUSG00000027676.12	ENSMUST00000029222.8	3606	20	18	13041	18	-817	5prime_fragment	FALSE	canonical	2	2	junction_3	3.52278299076171	14	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCTCCATGTAATTCC	NA	False	NA	NA	False	NA	NA	NA	33898432	33879551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_33879705_33880603_33880799_33884173_33884307_33884805_33884910_33886676_33886869_33890864_33890994_33891088_33891182_33891954_33892114_33893226_33893374_33895217_33895338_33898253
55815	chr10	+	1990	12	NNC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	8	-148	intron_retention	FALSE	non_canonical	0	0	junction_6	196.584597901848	1	96	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGAGTCTCTGCTGTGTTC	9205	False	NA	NA	False	NA	NA	NA	127102244	127117671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112410_127112570_127112719_127113123_127113395_127113563_127113642_127113735_127114092_127114185_127114278_127117269
55816	chr7	-	3485	4	NNC	ENSMUSG00000035239.7	novel	3341	3	NA	NA	66	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.49443825784929	28	80	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGCGTGAACAGCTTGGA	6091	False	NA	NA	False	NA	NA	NA	99477558	99460656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99463515_99472528_99472741_99474883_99475105_99477364
55817	chr2	+	2003	7	NNC	ENSMUSG00000039254.17	novel	2918	20	NA	NA	3729	5151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	274	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTGACTCCAGAATGAC	NA	False	NA	13	True	NA	NA	NA	32145013	32150168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32146226_32146630_32146679_32148101_32148197_32148288_32148430_32148580_32148680_32149591_32149752_32149920
55818	chr4	-	2065	1	NIC	ENSMUSG00000043257.16	novel	3979	4	NA	NA	6885	-1444	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACACACCCTTTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	133393073	133391008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133391000_133393100
55819	chr11	-	1220	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	121	2	-75	-2	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	2	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCCAACTCAGTTGTT	6392	False	NA	NA	False	NA	NA	NA	69812091	69807547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
55820	chr1	+	2087	8	NNC	ENSMUSG00000000544.15	novel	2227	8	NA	NA	-10	-22	intron_retention	FALSE	non_canonical	0	0	junction_7	70.4990953770301	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTTACTGGTGGAAAT	NA	False	NA	NA	False	NA	NA	NA	165958025	165994056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165993547_165993732
55821	chr17	+	1395	3	ISM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	36553	14	13183	-14	3prime_fragment	FALSE	canonical	3	438	junction_1	5.5	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTAACTAAAGCCCCA	5141	False	NA	NA	False	NA	NA	NA	57016917	57018750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57017231_57017590_57017778_57017855
55822	chr7	-	2133	21	FSM	ENSMUSG00000061028.8	ENSMUST00000086041.7	2180	21	39	8	5	0	multi-exon	FALSE	canonical	3	161	junction_6	32.5501152071694	144	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	NA	False	NA	NA	NA	19338372	19314967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318127_19318208_19318268_19318394_19318456_19318708_19318749_19319014_19319273_19320265_19320536_19320636_19320853_19321749_19321792_19322515_19322590_19322670_19322750_19324163_19324261_19325014_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
55823	chr9	+	717	1	NIC	ENSMUSG00000036138.17	novel	1762	12	NA	NA	1067	-10	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCAGTTTGGTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	119178637	119179354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119178600_119179400
55824	chr1	+	1692	4	NNC	ENSMUSG00000050565.17	novel	2589	3	NA	NA	14	-772	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	76.8389368889382	1	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGCTGGATTCTAGATT	NA	False	NA	NA	False	NA	NA	NA	155916676	155928503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_155916749_155916820_155916881_155926154_155926255_155927043
55825	chr11	+	2486	17	NNC	ENSMUSG00000009090.18	novel	4085	21	NA	NA	1	-1223	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	111.600851251234	1	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCGTGGAGATCTCCCT	NA	False	NA	NA	False	NA	NA	NA	4936934	4989179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965746_4966614_4966852_4968015_4968207_4969280_4969503_4973096_4973214_4974371_4974468_4975593_4975714_4976251_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124
55826	chr5	+	2189	10	FSM	ENSMUSG00000007207.11	ENSMUST00000150838.2	2167	10	-22	0	-22	0	multi-exon	FALSE	canonical	3	9	junction_4	7.53428378140653	81	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTCTGTTTGGAACA	NA	False	NA	NA	False	NA	NA	NA	135052391	135079954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135052465_135065979_135066058_135066329_135066430_135070090_135070166_135070784_135070859_135070962_135071072_135071446_135071521_135074450_135074589_135077764_135077959_135078680
55829	chr6	+	3069	1	ISM	ENSMUSG00000032827.16	ENSMUST00000035813.9	9547	16	259255	18	49116	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	13	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAATACAGAGGTCTC	NA	False	NA	NA	False	NA	NA	NA	5162574	5165643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_5162600_5165600
55830	chr4	-	1750	8	NNC	ENSMUSG00000028790.14	novel	3738	9	NA	NA	-13825	-1037	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	242.371278691791	19	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATGTGATGAATTGTCA	2459	False	NA	NA	False	NA	NA	NA	129621438	129608648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129608884_129609165_129609980_129612875_129612935_129613831_129613900_129614444_129614647_129616437_129616572_129619368_129619516_129621347
55831	chr10	-	770	2	FSM	ENSMUSG00000033307.8	ENSMUST00000218267.2	600	2	-76	-94	-28	-3	multi-exon	FALSE	canonical	3	12818	junction_1	0	187	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGGTTGCCTCAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	75696102	75695189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75695378_75695520
55832	chr2	-	2863	17	NNC	ENSMUSG00000042272.18	novel	2720	18	NA	NA	-1	-1075	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	50.5046022036606	2	116	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAACTTAAATGAGACA	NA	False	NA	NA	False	NA	NA	NA	77110934	77017973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_77018966_77021304_77021497_77022042_77022162_77022842_77022925_77027166_77027327_77028632_77028748_77029209_77029405_77036549_77036673_77042703_77042916_77045405_77045462_77047266_77047356_77048428_77048537_77061005_77061122_77064992_77065084_77071956_77072066_77075360_77075429_77110898
55834	chr15	-	883	1	NIC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	1465	645	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCACGTTGTTGGCTCTG	3328	False	NA	NA	False	NA	NA	NA	36791193	36790310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36790300_36791200
55835	chr6	-	1359	1	Intergenic	novelGene_4227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCAAAAATCTAACCCTAA	9843	False	NA	NA	False	NA	NA	NA	116183620	116182261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_116182300_116183600
55836	chr4	+	2221	6	NNC	ENSMUSG00000028797.21	novel	875	6	NA	NA	0	-11	intron_retention	FALSE	non_canonical	0	0	junction_5	316.888245285306	7	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCTACAGCAAACAAAGC	3197	False	NA	NA	False	NA	NA	NA	129494493	129502303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129495037_129495199_129496055_129500879_129500973_129501248_129502136_129502209
55837	chr11	-	2881	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	12	22	12	-22	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	1	169	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCAATAAAACAGTTAAAAG	5019	False	NA	NA	False	NA	NA	NA	63970280	63853474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
55839	chr6	+	1825	4	ISM	ENSMUSG00000030037.10_ENSMUSG00000107499.2	ENSMUST00000101254.9	2317	9	2028	-795	1971	-750	intron_retention	FALSE	canonical	3	9	junction_3	1.4142135623731	1	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGTCCACGAGGTACGG	1972	False	NA	NA	False	NA	NA	NA	83080609	83086170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83080707_83084033_83084149_83084435_83084614_83084735
55841	chr1	-	1465	5	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	-25	-563	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1925.24991884171	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTAAAAGATGAGTTCTG	7341	False	NA	NA	False	NA	NA	NA	160040400	160030499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160031272_160033570_160033766_160034182_160034280_160035948_160036166_160040216
55842	chr6	+	1610	11	FSM	ENSMUSG00000029913.15	ENSMUST00000031973.13	1488	11	-44	-78	-7	0	multi-exon	FALSE	canonical	2	2	junction_3	49.012753442344	118	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	NA	NA	NA	65755964	65913360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
55843	chrX	+	911	3	NNC	ENSMUSG00000051257.4	novel	1178	3	NA	NA	175	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	1295	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTGTTTCACGTTAAC	NA	False	NA	NA	False	NA	NA	NA	138234606	138238916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_138235157_138237660_138237800_138238694
55844	chr15	-	1575	7	ISM	ENSMUSG00000023755.11	ENSMUST00000229352.2	1604	8	12587	0	13	0	3prime_fragment	FALSE	canonical	3	176	junction_2	18.3212081115484	614	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	NA	False	NA	NA	NA	98779202	98775658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98776179_98776333_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
55845	chr4	+	207	1	ISM	ENSMUSG00000028478.19	ENSMUST00000107846.10	1710	6	7834	20354	-352	-20353	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTCCCCTAGGGTGGCA	7839	False	NA	NA	False	NA	NA	NA	44012285	44012492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_44012300_44012500
55846	chr11	-	1353	3	NNC	ENSMUSG00000034120.19	novel	620	3	NA	NA	4	0	intron_retention	FALSE	non_canonical	0	0	junction_2	929	7	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATGTGTCCTGGTCTTT	6007	False	NA	NA	False	NA	NA	NA	116743916	116740731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116741788_116742846_116742912_116743684
55847	chr7	-	1189	8	ISM	ENSMUSG00000038670.12	ENSMUST00000165208.4	3611	28	17465	21	1887	-21	3prime_fragment	FALSE	canonical	2	4	junction_7	5.67845911838623	87	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCATGTGTCCATCTTTC	NA	False	NA	NA	False	NA	NA	NA	44156615	44151143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44151267_44153060_44153248_44154422_44154560_44154659_44154820_44154989_44155130_44155475_44155672_44156231_44156321_44156458
55849	chr5	-	1889	2	FSM	ENSMUSG00000072774.11	ENSMUST00000191135.2	1923	2	25	9	25	-9	multi-exon	FALSE	canonical	3	8	junction_1	0	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAGGTGGAGTTTAAATG	NA	False	NA	NA	False	NA	NA	NA	105007634	104983594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_104985382_105007532
55850	chr11	+	1624	9	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-4679	combination_of_known_splicesites	FALSE	canonical	2	481	junction_8	2211.58833971763	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGACATGTGATTACCAA	NA	False	NA	NA	False	NA	NA	NA	55360559	55390985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55390284
55851	chr11	+	1843	4	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_3	4.49691252107735	75	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	NA	False	NA	NA	NA	22958448	22973730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22958627_22965654_22965885_22969999_22971134_22973429
55852	chr1	+	1475	7	NNC	ENSMUSG00000026172.13	novel	1488	8	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	50.4757917774011	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCAGGTACCTACAAGA	1136	False	NA	NA	False	NA	NA	NA	74627452	74631344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74630123_74630289_74630747_74630866_74630980
55853	chr6	+	2366	10	NIC	ENSMUSG00000029823.17	novel	2702	10	NA	NA	286	-18	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	51.5991195254577	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATATGTAACCAACATACT	NA	False	NA	NA	False	NA	NA	NA	38547322	38586344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_38547540_38547976_38548024_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211_38580404_38585087
55854	chr5	+	1809	2	FSM	ENSMUSG00000106968.2	ENSMUST00000202711.2	848	2	4	-965	4	965	multi-exon	FALSE	canonical	3	15	junction_1	0	139	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCCTTCATTGATACAT	NA	False	NA	NA	False	NA	NA	NA	74103727	74106684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_74103968_74105115
55855	chr15	+	1570	3	Antisense	novelGene_ENSMUSG00000022358.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	203	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTCTGGCTATATGTTC	NA	False	NA	NA	False	NA	NA	NA	58024830	58048276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_58025072_58043176_58044054_58047824
55856	chr8	+	1062	8	NIC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	7	170	combination_of_known_splicesites	FALSE	canonical	2	52	junction_4	697.084218845374	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCGTCATCGTGCCA	NA	False	NA	NA	False	NA	NA	NA	95584135	95590539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588809_95588862_95589148_95589318_95589437_95589513_95590079
55857	chr16	-	1685	10	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	5	-1	combination_of_known_splicesites	FALSE	canonical	2	8	junction_7	39.6960675354345	7	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCAGACTGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	93400674	93380346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93396099_93396196_93398525_93398687_93400453
55859	chr9	+	1952	12	NNC	ENSMUSG00000010048.11	novel	2056	12	NA	NA	-4	-4	intron_retention	TRUE	non_canonical	0	0	junction_2	312.146342030425	1	104	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGTGGCCTTTATCCTG	NA	False	NA	NA	False	NA	NA	NA	107464920	107470233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107465146_107467101_107467210_107467307_107467393_107467496_107467617_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469568_107469673
55861	chr11	+	3536	2	FSM	ENSMUSG00002076304.1_ENSMUSG00000020385.17	ENSMUST00000133200.2	442	2	-6	-3088	-6	-97	multi-exon	FALSE	canonical	3	128	junction_1	0	7	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAGAGGGGGGATGGGA	NA	False	NA	NA	False	NA	NA	NA	51153982	51161419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51154097_51157997
55862	chr2	+	1204	9	NNC	ENSMUSG00000027018.12	novel	1899	11	NA	NA	-28	-107	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	939.102896385694	1	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5090	False	NA	NA	False	NA	NA	NA	71219575	71271859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251095_71251947_71251991_71269050_71269157_71271511
55863	chr5	-	2188	12	Genic_Genomic	ENSMUSG00000029607.15	novel	1774	4	NA	NA	-4969	15066	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTGACAAGGATCCTAAA	NA	False	NA	31	True	NA	NA	NA	143839472	143812492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_143812512_143814389_143814496_143816254_143816332_143818968_143819069_143820788_143820844_143821471_143821797_143823665_143823791_143826226_143826313_143833980_143834095_143834298_143834374_143835829_143836066_143838602
55864	chr4	+	2214	9	NNC	ENSMUSG00000028576.13	novel	1713	14	NA	NA	2	-24830	intron_retention	FALSE	canonical	3	12	junction_8	62.4234531246069	32	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATTATTGTTGTAATCTG	NA	False	NA	NA	False	NA	NA	NA	94502729	94528105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94526652
55865	chr17	-	2696	5	NNC	ENSMUSG00000024114.16	novel	1799	5	NA	NA	30	721	intron_retention	FALSE	canonical	3	10	junction_2	5.47722557505166	38	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACACATATAGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	24063093	24059304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24061500_24062173_24062318_24062415_24062585_24062812_24062958_24063050
55867	chr2	+	1098	11	NNC	ENSMUSG00000027384.7	novel	1200	11	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	76.7072356430604	75	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGTACAGTTTGAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	140012954	140045606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_140013175_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
55868	chr9	+	1199	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	10	2	10	-2	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTCTCAGGATTTGAGT	9579	False	NA	NA	False	NA	NA	NA	64188898	64212072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
55869	chr11	-	1037	5	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-59	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9264.45590347863	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	6408	False	NA	NA	False	NA	NA	NA	69812075	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808294_69808742_69808848_69809976_69810163_69811988
55872	chr9	+	892	7	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-148	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7282.84728355302	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTGTGTGACTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	64080657	64085800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082488_64084610_64084760_64085002_64085087_64085178_64085300_64085504
55874	chr9	+	2319	1	Antisense	novelGene_ENSMUSG00000043895.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCAGAGGCTGCCAGGTT	8407	False	NA	NA	False	NA	NA	NA	20877268	20879587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_20877300_20879600
55875	chr8	+	2409	8	ISM	ENSMUSG00000034796.15	ENSMUST00000134235.8	3018	14	9073	-3	-70	1	3prime_fragment	FALSE	canonical	3	10	junction_1	4.85293935756087	62	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTGTGCCTTTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	123853185	123861922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123854179_123854471_123854532_123855316_123855451_123856281_123856337_123856792_123856845_123856911_123857046_123860347_123860585_123861178
55876	chr4	-	1554	7	ISM	ENSMUSG00000028776.15	ENSMUST00000175992.8	1847	11	6468	0	1160	0	3prime_fragment	FALSE	canonical	3	223	junction_6	23.9930545505708	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	130062117	130059396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722
55877	chr8	+	2467	9	FSM	ENSMUSG00000008129.15	ENSMUST00000118856.8	2366	9	-102	1	32	0	multi-exon	TRUE	canonical	2	9	junction_1	4.49826355386165	32	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCTGATCTGTAGCTGT	1915	False	NA	NA	False	NA	NA	NA	84874685	84899218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84888928_84889034_84893209_84894320_84896983_84897082_84898446_84898540_84898789
55878	chr14	+	1038	11	NNC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	96.3950724881723	1453	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	NA	False	NA	NA	NA	55815902	55818985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55816071_55817051_55817085_55817227_55817291_55817375_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
55879	chr3	-	2676	1	NIC	ENSMUSG00000027709.10	novel	2934	19	NA	NA	-28	-2299	mono-exon	FALSE	NA	NA	NA	NA	NA	5	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAACCCAACATCAGTC	9412	False	NA	NA	False	NA	NA	NA	36044109	36041433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_36041400_36044100
55881	chr18	+	1191	7	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-58	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	296.0039414152	2	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTCTGTTTGGTGTCTTA	988	False	NA	NA	False	NA	NA	NA	84953094	84999595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980751_84999316
55883	chr1	-	1246	4	FSM	ENSMUSG00000039246.9	ENSMUST00000195481.2	584	4	-13	-649	9	-153	multi-exon	FALSE	canonical	3	17	junction_2	56.8174464598878	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTTACTGACTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	185849498	185820080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_185820966_185821640_185821757_185846460_185846561_185849353
55886	chr6	-	2666	4	ISM	ENSMUSG00000039841.15	ENSMUST00000115321.9	2699	6	1088	907	1076	-907	internal_fragment	FALSE	canonical	3	31	junction_2	8.9938250421547	8	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTTTTCGGGATTAT	1839	False	NA	NA	False	NA	NA	NA	28260834	28242354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_28244663_28247139_28247284_28256429_28256526_28260716
55887	chr9	+	2530	4	ISM	ENSMUSG00000032500.11	ENSMUST00000111879.5	3005	5	29040	-440	29040	440	3prime_fragment	FALSE	canonical	3	22	junction_1	4.96655480858378	102	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTTTTATCTGACGATAA	7286	False	NA	NA	False	NA	NA	NA	111297188	111318626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_111298384_111311685_111311819_111313984_111314153_111317592
55888	chr10	+	1067	7	NNC	ENSMUSG00000000295.14	novel	858	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	234.945915762188	1992	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	31189381	31204200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31197534_31197747_31202017_31202157_31203876
55889	chr4	-	1995	4	NNC	ENSMUSG00000028807.3	novel	2321	5	NA	NA	8793	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	70.9475549653091	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	5683	False	NA	NA	False	NA	NA	NA	129263116	129247420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129248298_129251497_129251668_129253690_129254544_129263021
55890	chr14	-	2533	20	NNC	ENSMUSG00000022020.16	novel	13223	20	NA	NA	94	-124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	60.8748318466225	1	99	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGCTCTTAATGAATGAA	NA	False	NA	NA	False	NA	NA	NA	79628036	79573199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577572_79578426_79578536_79580565_79580748_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
55891	chr14	+	3667	12	NNC	ENSMUSG00000021987.10	novel	3813	14	NA	NA	15	-41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	26.6452048622029	1	192	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCATGTATTATTTAAAG	NA	False	NA	NA	False	NA	NA	NA	60502736	60539778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_60502811_60514577_60514695_60517531_60517695_60519385_60519544_60522365_60522495_60526991_60527127_60529442_60529576_60530366_60530608_60534022_60534224_60535511_60535644_60536363_60536491_60537721
55892	chr15	+	1153	5	FSM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	39	32	12	-2	multi-exon	FALSE	canonical	3	129	junction_1	259.364969685576	1515	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGTTCTACTCACCTGTG	2417	False	NA	NA	False	NA	NA	NA	102367648	102371209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804_102369155_102370605
55893	chr8	+	2938	7	NNC	ENSMUSG00000055932.16	novel	3564	9	NA	NA	33485	-16	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	103.620568528754	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGATGAGAAGCCTAAGAGC	NA	False	NA	NA	False	NA	NA	NA	92150667	92395051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_92150851_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
55894	chr17	+	2763	10	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1673	-6	intron_retention	FALSE	canonical	3	34	junction_4	12.4672410245985	287	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTGATGGCTCGCACCC	NA	False	NA	NA	False	NA	NA	NA	57184175	57195898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
55895	chr10	+	822	5	NIC	ENSMUSG00000075706.12	novel	735	6	NA	NA	48	-1	intron_retention	FALSE	canonical	3	7423	junction_3	341.037662876111	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTGTGTCTTTGGGT	1680	False	NA	NA	False	NA	NA	NA	79890346	79892272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
55897	chr5	-	1596	5	NNC	ENSMUSG00000011884.14	novel	1762	5	NA	NA	-11	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	611.090572255865	4	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACACCTGCATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114828980	114807468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114808651_114812114_114812266_114814325_114814460_114815681_114815702_114828871
55898	chr2	-	2840	14	FSM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	22	9	-1	-9	multi-exon	TRUE	canonical	3	390	junction_9	31.3157237855525	113	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTTTTCTTCTGTCTAG	NA	False	NA	NA	False	NA	NA	NA	93652891	93525984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
55899	chr9	-	908	6	NNC	ENSMUSG00000097195.11	novel	809	6	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_5	441.408926053835	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	NA	False	NA	NA	NA	88404940	88403109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404583_88404670
55900	chr7	-	1219	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	-27	0	-27	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	1187	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	NA	False	NA	NA	NA	26878348	26867848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
55901	chr2	+	3620	22	ISM	ENSMUSG00000026944.19	ENSMUST00000102919.4	8033	48	13598	2	-647	-2	3prime_fragment	FALSE	canonical	3	44	junction_3	6.68025825400007	32	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACCTGTGGGAGCCTG	78	False	NA	NA	False	NA	NA	NA	25332312	25338550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_25332410_25332661_25332765_25332846_25333167_25333240_25333455_25333540_25333647_25333737_25333850_25333938_25334000_25334081_25334257_25334336_25334453_25334533_25334682_25334825_25334950_25335083_25335217_25335319_25335438_25335561_25335741_25335981_25336124_25336222_25336358_25336449_25336554_25336626_25336720_25336802_25336906_25336989_25337128_25337211_25337413_25337852
55902	chr11	+	1250	10	NIC	ENSMUSG00000023170.15	novel	1159	11	NA	NA	-20	7	intron_retention	FALSE	canonical	3	122	junction_1	69.6261622462117	365	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACCATCATGCCTGAGT	4071	False	NA	NA	False	NA	NA	NA	69804855	69807409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806939_69807023_69807120_69807245
55904	chr7	+	3039	9	NIC	ENSMUSG00000099481.7	novel	2298	11	NA	NA	66	-303	intron_retention	FALSE	canonical	2	17	junction_2	31.9880348724332	1	108	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGCAAGAGAAATAGAAGAAC	NA	False	NA	NA	False	NA	NA	NA	101714865	101731425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101715012_101719103_101719199_101720425_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101729812_101730689_101730818_101731247
55905	chr4	-	528	1	FSM	ENSMUSG00000079942.6	ENSMUST00000116058.3	393	1	-57	-78	-57	78	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTGCCTCTGCCTCCC	NA	False	NA	NA	False	NA	NA	NA	125964109	125963581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_125963600_125964100
55906	chr4	-	1769	1	Intergenic	novelGene_1928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAAAATTATTAATATAA	NA	False	NA	NA	False	NA	NA	NA	109694417	109692648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_109692600_109694400
55909	chr2	+	3121	3	Antisense	novelGene_ENSMUSG00000027010.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGGGTAACCTAAAATA	NA	False	NA	NA	False	NA	NA	NA	71178312	71181657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_71180938_71181056_71181196_71181300
55910	chr9	-	3147	1	FSM	ENSMUSG00000079083.4	ENSMUST00000110582.4	3223	1	-267	343	-267	-343	mono-exon	FALSE	NA	NA	NA	NA	NA	23	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGAATGTTTTGATTTT	NA	False	NA	NA	False	NA	NA	NA	13246101	13242954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_13243000_13246100
55911	chr17	+	222	3	NIC	ENSMUSG00000057863.7	novel	383	4	NA	NA	0	-26	combination_of_known_splicesites	FALSE	canonical	2	151	junction_2	2642.5	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTCCCCCAATAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	56920415	56921217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56920449_56920585_56920681_56921123
55912	chr7	-	1330	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	0	2955	0	3	multi-exon	FALSE	canonical	3	320	junction_4	76.5855530682877	2365	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTATTGGTCTATTTTT	NA	False	NA	NA	False	NA	NA	NA	100232309	100197912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
55913	chr9	-	1640	12	FSM	ENSMUSG00000010651.5	ENSMUST00000010795.5	1689	12	29	20	29	-20	multi-exon	TRUE	canonical	2	3	junction_6	59.9400526973023	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGTTGCAGTCATTTCA	NA	False	NA	NA	False	NA	NA	NA	118986132	118977110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982737_118982781_118982993_118983074_118984812_118984871_118985658_118985753_118985891
55914	chr2	+	1629	7	FSM	ENSMUSG00000047909.12	ENSMUST00000056108.12	1618	7	-11	0	-11	0	multi-exon	FALSE	canonical	3	24	junction_3	18.7742435858871	118	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGGCCTATTCAATT	4757	False	NA	NA	False	NA	NA	NA	11783290	11795136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_11783714_11784487_11784709_11786287_11786331_11788451_11788561_11789101_11789264_11791034_11791114_11794544
55915	chr5	-	2312	20	ISM	ENSMUSG00000036555.15	ENSMUST00000077890.12	2494	23	43	4827	-2	-3949	5prime_fragment	FALSE	canonical	3	10	junction_16	7.92380613096434	18	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGTTGAAGATCTAG	4493	False	NA	NA	False	NA	NA	NA	140688051	140655861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_140656323_140657098_140657221_140657561_140657682_140660091_140660116_140660832_140661004_140663170_140663262_140663828_140663934_140666470_140666701_140668156_140668213_140669130_140669295_140671799_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140679169_140679299_140682762_140682809_140685439_140685488_140687936
55916	chr19	-	536	2	Antisense	novelGene_ENSMUSG00000036278.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGCCATTCCCGCAGCG	NA	False	NA	NA	False	NA	NA	NA	7175417	7174574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_7174588_7174894
55917	chr11	+	2144	14	NNC	ENSMUSG00000056598.17	novel	1917	14	NA	NA	-236	-1	at_least_one_novel_splicesite	FALSE	non_canonical	2	6	junction_1	7.40062367434196	64	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAAAAGGTCTGGTGTC	3185	False	NA	NA	False	NA	NA	NA	60243918	60285158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619_60266732_60268634_60268811_60275039_60275172_60278118_60278190_60279638_60279763_60284522_60284655_60284950
55918	chr7	+	903	5	NNC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	557.014586882606	14	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	NA	False	NA	NA	NA	25358597	25367457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_25358809_25362561_25362676_25364831_25364987_25365677_25365768_25367124
55919	chr7	+	1692	9	FSM	ENSMUSG00000030815.12	ENSMUST00000154891.8	1722	9	26	4	26	1	multi-exon	FALSE	canonical	3	16	junction_2	40.5768945953236	56	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCCATGTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	127172780	127182473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
55921	chr11	-	1158	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	-16	17	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	399.354178643469	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGTTTCCCTAACTTG	NA	False	NA	NA	False	NA	NA	NA	117716709	117706334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117706966_117707272_117707393_117712922_117713017_117715496_117715608_117716426_117716459_117716539
55923	chr16	-	1460	3	ISM	ENSMUSG00000022500.16	ENSMUST00000117360.8	763	4	8929	-849	8929	-700	3prime_fragment	FALSE	canonical	3	340	junction_2	14	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGGGGGACCTCTATTT	8635	False	NA	NA	False	NA	NA	NA	10784514	10777838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_10778916_10781120_10781278_10784288
55924	chr12	-	2046	15	Antisense	novelGene_ENSMUSG00000073079.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	111	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCCAATGAGGAGACGTC	NA	False	NA	NA	False	NA	NA	NA	55159977	55127307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_55127533_55135969_55136127_55138023_55138112_55142592_55142703_55143891_55143959_55144038_55144107_55146703_55146844_55148115_55148274_55148607_55148702_55149244_55149336_55151969_55152049_55152400_55152511_55155287_55155456_55157868_55157966_55159583
55925	chr15	+	1181	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	10	329	0	-1	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	3764	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACACATTTTAGCTGGTC	NA	False	NA	NA	False	NA	NA	NA	76227732	76230131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
55928	chr4	-	1433	5	NIC	ENSMUSG00000059291.16	novel	833	6	NA	NA	22	-8	intron_retention	FALSE	canonical	3	383	junction_1	3906.64007652356	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGCATGTTACAGTTGT	NA	False	NA	NA	False	NA	NA	NA	135780682	135777265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135780029_135780658
55929	chr7	+	1465	8	ISM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	56930	5	26	-4	3prime_fragment	FALSE	canonical	3	314	junction_5	28.3541740079564	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTTTCTGCCCATCT	8746	False	NA	NA	False	NA	NA	NA	34668733	34744128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
55930	chr8	-	2839	1	Intergenic	novelGene_1774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCAATCATGTGAAACCT	NA	False	NA	NA	False	NA	NA	NA	120313722	120310883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_120310900_120313700
55931	chr17	-	2491	5	FSM	ENSMUSG00000024114.16	ENSMUST00000151797.3	1799	5	29	-721	6	721	multi-exon	FALSE	canonical	3	18	junction_2	4.71036092035419	38	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACACATATAGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	24063117	24059304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24061500_24062415_24062585_24062812_24062846_24062930_24062958_24063050
55932	chr9	-	1760	8	NNC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	-15	-16	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	91.621448339995	759	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGATACAGAGTGAAGAGC	8983	False	NA	NA	False	NA	NA	NA	57460014	57451554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57452222_57452477_57452687_57453676_57453879_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
55935	chr11	+	1138	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	183	1	-141	-1	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	170	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGATGTCCAGATTGCA	4140	False	NA	NA	False	NA	NA	NA	100210893	100212921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
55936	chr9	-	2404	13	FSM	ENSMUSG00000032312.8	ENSMUST00000034863.8	2749	13	342	3	-202	-2	multi-exon	FALSE	canonical	3	100	junction_12	11.433381924095	125	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCCAGCCTCGGCGCTTC	171	False	NA	NA	False	NA	NA	NA	57552594	57533931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57534787_57534999_57535087_57535160_57535357_57535459_57535534_57535935_57536027_57536103_57536204_57536283_57536350_57536542_57536637_57537450_57537671_57537962_57538076_57538177_57538292_57538649_57538727_57552277
55937	chr6	+	849	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-45	-339	-45	339	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCATGCGTCTGTGGAGCA	NA	False	NA	NA	False	NA	NA	NA	37782975	37783824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37783000_37783800
55938	chr6	-	1219	6	Antisense	novelGene_ENSMUSG00000029910.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCCACCCGGTTCAAAAAT	NA	False	NA	NA	False	NA	NA	NA	66517991	66512441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_66512584_66512941_66513087_66514550_66514673_66515947_66516053_66516754_66517089_66517620
55939	chr8	-	1829	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	433	0	433	0	mono-exon	FALSE	NA	NA	NA	NA	NA	214	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTATGTCATGATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	106738081	106736252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106736300_106738100
55940	chr5	-	2965	15	NNC	ENSMUSG00000035266.17	novel	3689	18	NA	NA	0	-1696	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	15.921362878798	3	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGACTCTACCTGTCGTTTG	NA	False	NA	NA	False	NA	NA	NA	100946443	100916298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100916511_100918263_100918363_100919599_100919758_100921810_100922031_100926597_100926703_100927017_100927160_100930823_100931064_100933147_100933294_100934849_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944219_100944929_100946159
55941	chr1	-	2055	1	Genic_Genomic	ENSMUSG00000098447.3	novel	NA	NA	NA	NA	-1870	-6085	mono-exon	FALSE	NA	NA	NA	NA	NA	12	78	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGGACGCTTCCTGGAGG	NA	False	NA	NA	False	NA	NA	NA	119455959	119453904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_119453900_119456000
55942	chr4	+	2063	10	FSM	ENSMUSG00000028347.15	ENSMUST00000130834.8	1426	10	24	-661	24	0	multi-exon	FALSE	canonical	3	335	junction_4	69.1178989163971	273	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTGCTTTGTGTGCTCA	272	False	NA	NA	False	NA	NA	NA	48585574	48663131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617231_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
55943	chr1	-	1971	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	-2	-5	-2	5	multi-exon	FALSE	canonical	3	87	junction_1	0	564	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAATATAAATATG	NA	False	NA	NA	False	NA	NA	NA	153283538	153280567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_153282348_153283347
55944	chr10	+	4888	8	NIC	ENSMUSG00000034560.7	novel	5858	33	NA	NA	1279	311	intron_retention	FALSE	canonical	3	289	junction_4	34.5188502185134	3	186	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTACCAATATTTCTGT	NA	False	NA	NA	False	NA	NA	NA	83416610	83431609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034
55946	chr17	-	1539	6	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	31	-1493	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	243.733789204534	125	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCAAGTGGATGGTGT	NA	False	NA	NA	False	NA	NA	NA	56597480	56585968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56587074_56587741_56587820_56593248_56593296_56593447_56593647_56594793_56594877_56597453
55947	chr3	-	1485	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	-1	0	1	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	252	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTGTCTGAGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	120965344	120949045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
55950	chr1	-	2788	1	Antisense	novelGene_ENSMUSG00000026429.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAAAAGAAAAGAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	134898251	134895463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_134895500_134898300
55952	chr10	-	2248	6	Fusion	ENSMUSG00000091994.3_ENSMUSG00000035835.15	novel	3063	9	NA	NA	5249	-3075	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	106	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCGGAGACGCCCGCAC	NA	False	NA	NA	False	NA	NA	NA	79697866	79690460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_79690563_79694579_79694659_79694782_79695354_79695432_79695544_79695612_79695791_79696659
55954	chr17	+	882	4	NNC	ENSMUSG00000046711.17	novel	1681	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1773.09152486711	117	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGACAGTCTCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	27775641	27782636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778678_27779901_27779927_27781994
55955	chr14	-	2501	12	FSM	ENSMUSG00000021785.9	ENSMUST00000022310.7	2935	12	45	389	-2	5	multi-exon	FALSE	canonical	3	40	junction_2	12.9506373690434	52	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCAGTGCTTACCT	NA	False	NA	NA	False	NA	NA	NA	6220438	6158225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_6158905_6159271_6159450_6175089_6175276_6178827_6178993_6186289_6186401_6187877_6188024_6188948_6189071_6191741_6191965_6199122_6199289_6208962_6209200_6215006_6215122_6220265
55956	chr11	+	1884	8	NNC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	11	-4	intron_retention	FALSE	canonical	0	0	junction_3	292.28836753439	1	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATACTGTGGTGGTCTGA	NA	False	NA	NA	False	NA	NA	NA	68936526	68942486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68936835_68938610_68938714_68938797_68938868_68939003_68939183_68939331_68939471_68939556_68939706_68941127_68941303_68941725
55957	chr12	+	2003	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	1	1	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	418	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGGCTAGTCTTTACT	NA	False	NA	NA	False	NA	NA	NA	69771758	69791433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
55960	chr13	+	2433	17	NNC	ENSMUSG00000021428.10	novel	2738	17	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	56.1693519078688	1	116	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGGGTAGTTTGCATT	4782	False	NA	NA	False	NA	NA	NA	38221264	38245402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241116_38241233_38242663_38242718_38243915_38244069_38244730
55961	chr9	+	976	1	ISM	ENSMUSG00000025602.14	ENSMUST00000168691.2	3873	7	19879	434	19866	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATGAGAAGGAAGATATAC	NA	False	NA	NA	False	NA	NA	NA	40123490	40124466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_40123500_40124500
55962	chr3	+	2406	2	ISM	ENSMUSG00000105960.2	ENSMUST00000199846.2	3871	5	4220	1	4220	-1	3prime_fragment	FALSE	canonical	3	92	junction_1	0	3	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACTGCAGCACTGTCTAA	NA	False	NA	NA	False	NA	NA	NA	129551626	129557532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_129551788_129555287
55963	chr2	+	1713	15	NNC	ENSMUSG00000027649.16	novel	2442	16	NA	NA	51	-514	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	153.392986030214	11	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATTGTATGTGTAAGCT	NA	False	NA	NA	False	NA	NA	NA	157579371	157733020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678584_157713065_157713109_157726052_157726191_157726347_157726421_157732824
55965	chr6	-	1436	4	Antisense	novelGene_ENSMUSG00000067338.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAAACCAGAACAGAAACA	NA	False	NA	NA	False	NA	NA	NA	145567196	145563957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_145564181_145564456_145564604_145564903_145565596_145566822
55966	chr6	+	1735	5	Antisense	novelGene_ENSMUSG00000038429.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGTACCGCCCCCCTCC	NA	False	NA	NA	False	NA	NA	NA	124800323	124806400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124801284_124801521_124801946_124802069_124802142_124803261_124803387_124806246
55967	chr7	+	2611	17	NNC	ENSMUSG00000035064.18	novel	6580	18	NA	NA	7388	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	22.8961650719067	1	97	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAAACAGGTTTGGCCT	NA	False	NA	NA	False	NA	NA	NA	120457799	120503214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120457886_120472531_120472606_120475634_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
55968	chr4	+	1462	10	FSM	ENSMUSG00000042616.9	ENSMUST00000035497.5	5013	10	18	3533	18	-2	multi-exon	FALSE	canonical	3	15	junction_8	4.26296135405575	105	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACCTTCCCCATTATTC	2381	False	NA	NA	False	NA	NA	NA	125952375	125982455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_125952586_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
55969	chr13	+	1948	5	NIC	ENSMUSG00000097709.9	novel	630	4	NA	NA	0	1184	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	5.93190525885234	16	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCAAGTACTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	3528242	3540467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_3528391_3529521_3529575_3529908_3530002_3535048_3535221_3538985
55970	chr16	-	888	6	NIC	ENSMUSG00000022956.12	novel	838	7	NA	NA	-42	0	intron_retention	FALSE	canonical	3	5653	junction_5	412.030290148673	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCGTGAGGAGCCTTGT	905	False	NA	NA	False	NA	NA	NA	91728481	91722106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
55971	chr2	+	1637	12	FSM	ENSMUSG00000063145.11	ENSMUST00000074963.9	1468	12	38	-207	-7	207	multi-exon	FALSE	canonical	3	71	junction_4	9.81144550053239	200	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTGTTTGTTGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	69477589	69498122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69484589_69484718_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
55972	chr17	+	2103	20	Genic_Genomic	ENSMUSG00000117072.2	novel	368	2	NA	NA	-8780	10504	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	67	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCAGGGCTATACAGAGA	NA	False	NA	NA	False	NA	NA	NA	13107643	13129096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_13107859_13108965_13109062_13109165_13109342_13109607_13109710_13111023_13111074_13111217_13111261_13111645_13111711_13112107_13112174_13113248_13113302_13114397_13114489_13116154_13116218_13118419_13118557_13118719_13118808_13122097_13122196_13124391_13124482_13124648_13124766_13125377_13125424_13127938_13128016_13128350_13128405_13128720
55973	chr5	-	3106	5	NIC	ENSMUSG00000066900.12	novel	2425	12	NA	NA	-1060	-2	intron_retention	FALSE	canonical	3	595	junction_3	37.7458607002145	6	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCCACGTGGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	117243526	117229746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_117231097_117232974_117233060_117236335_117237604_117238664_117238761_117243219
55974	chr3	-	1764	8	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	159	-9	intron_retention	FALSE	canonical	3	1829	junction_6	132.945132153326	4	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTGAAAGATATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	54641575	54636111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54641153_54641523
55975	chr4	+	626	1	Intergenic	novelGene_2167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATACTTGCTGCGCAAG	39	False	NA	NA	False	NA	NA	NA	149587328	149587954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_149587300_149588000
55976	chr19	-	1002	3	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1305	39	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCACCCCTGCCTCATGAG	NA	False	NA	NA	False	NA	NA	NA	8691236	8684949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685316_8690162_8690268_8690705
55978	chr5	+	1613	3	FSM	ENSMUSG00000029165.18	ENSMUST00000202565.2	839	3	-771	-3	-771	3	multi-exon	FALSE	canonical	3	35	junction_1	6	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCAGCCTGTCCTGCGAC	1745	False	NA	NA	False	NA	NA	NA	31050776	31053441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31051855_31052340_31052544_31053109
55979	chr2	+	1529	12	FSM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	152	61	145	-61	multi-exon	FALSE	canonical	3	1013	junction_10	106.078950794457	322	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCTGCCCCTTCATCCCT	NA	False	NA	NA	False	NA	NA	NA	172842061	172857471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
55980	chr15	-	1465	7	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	6	-5	intron_retention	FALSE	canonical	3	126	junction_5	16.200994482507	12	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCAGCCTGTGTTCTGTT	8518	False	NA	NA	False	NA	NA	NA	76234906	76231245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76231386_76231458_76231588_76231681_76232018_76232095_76232205_76232285_76232636_76234254_76234430_76234680
55982	chr9	+	3066	5	Antisense	novelGene_ENSMUSG00000032407.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTTCAAATATGGCACCC	NA	False	NA	NA	False	NA	NA	NA	95342457	95355615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_95343599_95344757_95344932_95346414_95346534_95348597_95348712_95354097
55983	chrX	+	1255	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069103.11	1304	9	-12	61	4	-58	multi-exon	FALSE	canonical	2	6	junction_1	98.081519028816	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACCCTGGGAAATCCTTA	NA	False	NA	NA	False	NA	NA	NA	72257942	72265998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72258192_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
55984	chr6	+	2493	1	Antisense	novelGene_ENSMUSG00000030298.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAACAAGAATGTCCAATAA	2186	False	NA	NA	False	NA	NA	NA	113704483	113706976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_113704500_113707000
55985	chr15	+	1877	18	FSM	ENSMUSG00000022436.17	ENSMUST00000109698.9	1923	18	46	0	46	0	multi-exon	FALSE	canonical	3	8	junction_17	114.336569876277	42	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAACTGGCCAAACGAAAA	4444	False	NA	NA	False	NA	NA	NA	78784013	78796251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78796129
55986	chr4	+	1326	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	109	22	109	-17	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTGTCTGGCTGGACC	NA	False	NA	NA	False	NA	NA	NA	152262699	152356287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
55987	chr14	-	1214	4	ISM	ENSMUSG00000022223.10	ENSMUST00000111325.5	1255	6	388	6	-15	-6	intron_retention	FALSE	canonical	3	161	junction_3	16.0485374896143	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGATCACTGGCTTCCGC	NA	False	NA	NA	False	NA	NA	NA	56137327	56134745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103
55988	chr2	+	1278	12	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	-8	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	417.252148432936	2	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	4156	False	NA	NA	False	NA	NA	NA	127429330	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436437_127437699_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
55989	chr9	+	1657	1	Genic_Genomic	ENSMUSG00000032050.19	novel	NA	NA	NA	NA	38810	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCCGCTGTTGTTATTTA	NA	False	NA	NA	False	NA	NA	NA	51998380	52000037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_51998400_5.2e+07
55991	chr6	-	1253	8	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	-2	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	844.639181508161	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	NA	False	NA	NA	NA	124791119	124787677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124787737_124787811_124788351_124788479_124788558_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
55992	chr8	-	1501	6	NNC	ENSMUSG00000111594.2	novel	1480	6	NA	NA	-1	9588	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	37.8449468225284	68	10	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGCTCTGCCTGGTCTTT	4886	False	NA	NA	False	NA	NA	NA	70037815	69997865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_69998480_69998586_69998635_70012121_70012309_70023182_70023486_70028637_70028852_70037680
55993	chr8	+	1859	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	48	0	6	0	multi-exon	TRUE	canonical	3	54	junction_4	11.5864970366477	209	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	85786731	85793750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
55995	chr10	-	1971	2	FSM	ENSMUSG00000050035.8	ENSMUST00000059383.8	3402	2	-7	1438	-7	256	multi-exon	FALSE	canonical	3	8	junction_1	0	53	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATAATTCTCAGCTGACC	NA	False	NA	NA	False	NA	NA	NA	84938366	84933588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_84935353_84938159
55996	chrX	-	2878	5	NNC	ENSMUSG00000041096.14	novel	2804	6	NA	NA	-19	-27	intron_retention	FALSE	non_canonical	0	0	junction_2	97.6575649911465	1	97	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCTAATAAAACTGAGCAA	NA	False	NA	NA	False	NA	NA	NA	151125440	151119877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_151120562_151121720_151122387_151122632_151122724_151122857_151123390_151124535
55997	chr9	-	2053	12	Antisense	novelGene_ENSMUSG00000104399.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.574959574576069	22	31	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAGAAAACTGAGGGGCAA	5649	False	NA	NA	False	NA	NA	NA	108269461	108248135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108248267_108249765_108249978_108250797_108250890_108251422_108251518_108255634_108255825_108256461_108256551_108258524_108258750_108261281_108261353_108261593_108261719_108262009_108262154_108268175_108268270_108268876
55998	chr6	+	2203	13	NNC	ENSMUSG00000001630.14	novel	2274	14	NA	NA	-6	-48	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_12	68.3379571606358	2	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAGAACCTAGTATGTTT	NA	False	NA	NA	False	NA	NA	NA	146626486	146678006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668181_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146674815_146674912_146676897_146676990_146677070
55999	chr4	+	1723	2	NNC	ENSMUSG00000042198.13	novel	279	2	NA	NA	24	0	intron_retention	FALSE	canonical	1	1	junction_1	0	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATATTCCTGGCCAGTG	44	False	NA	NA	False	NA	NA	NA	3939445	3941419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_3939527_3939777
56000	chr3	-	1587	4	FSM	ENSMUSG00000028133.18	ENSMUST00000039761.12	1145	4	7	-449	1	-16	multi-exon	FALSE	canonical	3	76	junction_2	14.8548533034381	254	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGATGAAATGTAAAAGGAC	NA	False	NA	NA	False	NA	NA	NA	120965336	120949064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_120949952_120950049_120950166_120952416_120952905_120965240
56008	chr7	-	1903	7	FSM	ENSMUSG00000030798.16	ENSMUST00000211373.2	1428	7	64	-539	5	1	multi-exon	FALSE	canonical	3	58	junction_1	11.4661337085446	19	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTGGTAAAAAT	4449	False	NA	NA	False	NA	NA	NA	44888234	44883054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
56009	chr11	+	1925	15	Antisense	novelGene_ENSMUSG00000018068.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGAAGACGTCGGCGGC	NA	False	NA	NA	False	NA	NA	NA	86123990	86148388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_86124085_86125496_86125630_86127361_86127434_86129084_86129202_86129292_86129360_86133733_86133859_86135225_86135458_86139637_86139807_86140044_86140179_86141793_86141908_86143083_86143184_86146168_86146314_86146851_86147155_86147261_86147324_86148330
56010	chr7	-	1855	4	ISM	ENSMUSG00000025484.10	ENSMUST00000211624.2	769	7	1066	-963	-12	-15	intron_retention	FALSE	canonical	2	4	junction_3	48.8330489183981	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGAAGTTCCGTGCCCG	NA	False	NA	NA	False	NA	NA	NA	140436209	140433321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_140434537_140434677_140434735_140434986_140435079_140435718
56011	chr19	-	1202	9	NNC	ENSMUSG00000024725.14	novel	2726	10	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	361.246258631145	14	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTGTTTTTGTGCTATC	NA	False	NA	NA	False	NA	NA	NA	18609183	18558175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571265_18581529_18581577_18608983
56012	chr12	-	1945	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	-22	9	-11	-9	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	989	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTTGTATATGGGTGT	NA	False	NA	NA	False	NA	NA	NA	36092510	36064564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
56013	chr17	+	1815	5	NIC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	-3	4	intron_retention	FALSE	canonical	3	1011	junction_1	70.7544168232627	33	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGGAACTCTGGAAC	7379	False	NA	NA	False	NA	NA	NA	36198824	36203521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36198890_36198975_36199095_36199246_36200493_36201806_36201981_36203310
56014	chr2	+	3906	4	FSM	ENSMUSG00000042155.4	ENSMUST00000053087.4	4617	4	130	581	130	-581	multi-exon	FALSE	canonical	0	0	junction_1	4.78423336480244	11	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTGTAACTTTAATTG	5602	False	NA	NA	False	NA	NA	NA	69652843	69666414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_69652987_69654130_69655345_69659189_69659343_69664018
56015	chr17	-	2256	1	NIC	ENSMUSG00000024246.10	novel	1833	10	NA	NA	20921	-15559	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTGTAGATAACCAAGCA	NA	False	NA	NA	False	NA	NA	NA	81351575	81349319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_81349300_81351600
56016	chr8	+	2751	1	ISM	ENSMUSG00000041308.7	ENSMUST00000212524.2	9945	7	81207	7	80808	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	31	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTAGACATTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	107743588	107746339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107743600_107746300
56018	chr1	+	2116	1	ISM	ENSMUSG00000070871.11	ENSMUST00000114077.8	3281	11	33074	0	32184	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCGAGTGTGTTTGTAC	NA	False	NA	NA	False	NA	NA	NA	64762687	64764803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_64762700_64764800
56019	chr1	-	1116	1	Antisense	novelGene_ENSMUSG00000026020.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAAGTGGATTTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	59728286	59727170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59727200_59728300
56021	chr5	-	1608	1	ISM	ENSMUSG00000036555.15	ENSMUST00000136385.8	6924	19	25179	11974	6409	7551	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGGCAGTGTCTCCACTTC	NA	False	NA	NA	False	NA	NA	NA	140662841	140661233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_140661200_140662800
56022	chr4	+	1263	5	NNC	ENSMUSG00000006392.17	novel	1145	7	NA	NA	535	-14	intron_retention	FALSE	canonical	1	7	junction_1	285.813313195869	2	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCTACCTTTCAACCCT	NA	False	NA	NA	False	NA	NA	NA	118268079	118272292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118268201_118268872_118269000_118269548_118269943_118270823_118271073_118271920
56023	chr16	-	1367	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	-7	0	-7	0	multi-exon	FALSE	canonical	3	143	junction_1	14.1244468918255	311	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGCAGGTTCTGAATGT	9183	False	NA	NA	False	NA	NA	NA	21766309	21753075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
56024	chr15	-	1834	8	ISM	ENSMUSG00000022992.18	ENSMUST00000231066.2	1980	9	600	10	580	-9	3prime_fragment	FALSE	canonical	1	91	junction_6	372.753461227583	2	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATGCTATCAAAGTGTA	NA	False	NA	NA	False	NA	NA	NA	98431545	98416710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429600_98429780_98431398
56025	chr1	-	817	1	Intergenic	novelGene_456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGAGGGGGGTCACCA	NA	False	NA	NA	False	NA	NA	NA	136637529	136636712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_136636700_136637500
56026	chr16	-	2634	22	NNC	ENSMUSG00000022843.18	novel	3128	24	NA	NA	100	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	90.0341079234373	1	93	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACACCTAATTAGCCAC	NA	False	NA	NA	False	NA	NA	NA	20534761	20521747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20528629_20528700_20529021_20529178_20529304_20529390_20530447_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532499_20534658
56028	chr13	+	2534	9	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	2951	0	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_6	303.728085629235	1	159	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	NA	NA	NA	54242915	54262361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258822_54258871_54259766_54259815_54260525
56029	chr19	+	1023	8	NIC	ENSMUSG00000108414.2	novel	605	10	NA	NA	0	-1	intron_retention	FALSE	canonical	3	444	junction_1	219.289669578103	37	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTATTGTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	8700850	8703804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702621_8702848_8703191_8703430_8703467_8703602
56030	chr15	+	1721	13	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-20	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	835.683801845331	1	96	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCGCTCTCAGTAAAGGG	NA	False	NA	NA	False	NA	NA	NA	78959427	78978569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959538_78961030_78961242_78962273_78962354_78963192_78963253_78965786_78965857_78966053_78966128_78968311_78968488_78969769_78969912_78970633_78970805_78973663_78973736_78973856_78974162_78977536_78977618_78978400
56031	chr11	+	1800	12	NNC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	-2	-2801	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	290.846498948179	2	90	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTAAATATCTTTCATG	NA	False	NA	NA	False	NA	NA	NA	102919408	102956937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102919529_102933993_102934103_102937204_102937354_102943058_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
56032	chr4	+	670	8	NNC	ENSMUSG00000054405.15	novel	932	8	NA	NA	-1	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1116.13988590049	5	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCACCAGAGAGTAGCGA	2361	False	NA	NA	False	NA	NA	NA	132262890	132280514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132280413
56035	chr5	-	474	1	Intergenic	novelGene_970	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCAGCATTTTCCAATGT	NA	False	NA	NA	False	NA	NA	NA	147815138	147814664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_147814700_147815100
56037	chr12	+	3282	1	Intergenic	novelGene_4456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCATGTGTGTATGCTAA	NA	False	NA	NA	False	NA	NA	NA	104404212	104407494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_104404200_104407500
56038	chr7	+	2563	3	FSM	ENSMUSG00000060260.14	ENSMUST00000172136.9	2543	3	0	-20	0	20	multi-exon	FALSE	canonical	3	21	junction_2	19.5	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAACTGTCTCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	138828402	138847097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_138828560_138834685_138836382_138846387
56039	chr3	-	2238	1	Antisense	novelGene_ENSMUSG00000028060.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTTTTTCTTACTGAA	6170	False	NA	NA	False	NA	NA	NA	88616969	88614731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88614700_88617000
56040	chr14	-	1475	7	NNC	ENSMUSG00000021792.16	novel	1537	6	NA	NA	-5	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.888505831757	12	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCTGTGCACAAGTTT	NA	False	NA	NA	False	NA	NA	NA	40735737	40715691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40716324_40716395_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
56041	chr11	-	1648	9	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	134	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4567.85868699711	1	101	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTACTTGGAAACTGCCTG	NA	False	NA	NA	False	NA	NA	NA	69561575	69557780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558580_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440
56042	chr14	-	1300	4	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCAGCCTGACAGATGGA	NA	False	NA	NA	False	NA	NA	NA	63380600	63375807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63375949_63376452_63376561_63379178_63379308_63379678
56043	chr12	-	1351	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	-5	0	-5	0	multi-exon	FALSE	canonical	3	293	junction_1	0	1123	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTCTTTTATGGTTAA	NA	False	NA	NA	False	NA	NA	NA	54703363	54692176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_54693321_54703156
56044	chr9	+	1152	9	FSM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	25	-12	0	12	multi-exon	FALSE	canonical	3	1650	junction_8	116.746252616519	8539	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACTTTCTCTGTGGCAA	NA	False	NA	NA	False	NA	NA	NA	54858098	54865326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
56045	chr6	+	845	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-87	-293	-87	293	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTTTTCTCTTCACTGG	NA	False	NA	NA	False	NA	NA	NA	37782933	37783778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37783800
56046	chr2	+	2319	16	NNC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	28	712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	213.62330293195	4	108	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGGTACTGTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	29825467	29848941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830205_29832622_29832779_29833736_29833850_29834000_29834071_29838901_29839053_29839186_29839359_29840613_29840744_29842566_29842661_29845617_29845701_29847761_29847826_29848458
56047	chr8	-	2413	11	NIC	ENSMUSG00000032815.17	novel	4485	43	NA	NA	233	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	50.3131195614027	5	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTGTCTGGCCTTATT	NA	False	NA	NA	False	NA	NA	NA	124003104	123995040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001206_124001313_124001870
56048	chr12	-	1041	8	NNC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.2433089267554	11	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	55126900	55092460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_55092741_55095737_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
56049	chr5	-	1411	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1187	2	intron_retention	FALSE	canonical	3	94	junction_1	0	220	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTGGTTATGTCTTTTG	735	False	NA	NA	False	NA	NA	NA	31646479	31643974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31645334_31646427
56050	chr16	-	1246	12	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	1	33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	604.184622322713	1	43	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATACATCTGTCACATG	9207	False	NA	NA	False	NA	NA	NA	91525484	91486380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489484_91489537_91492144_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
56053	chr16	-	1098	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	31	632	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3354.05280034468	3	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTGAAAGAGTATTTGGA	NA	False	NA	NA	False	NA	NA	NA	95928898	95922801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923621_95925979_95926046_95928352_95928404_95928510_95928541_95928766
56054	chrX	+	1323	6	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	8	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	148.395956818237	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTATCCGCTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99537968	99559610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99538163_99538510_99538819_99546616_99546797_99548795_99548876_99549545_99549659_99559162
56055	chr7	+	2607	4	NNC	ENSMUSG00000030727.13	novel	742	3	NA	NA	-871	-645	intron_retention	FALSE	non_canonical	0	0	junction_1	92.8307899112981	17	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGAAATGTAGGCTTC	NA	False	NA	NA	False	NA	NA	NA	126027059	126036934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126027224_126028198_126028329_126028747_126028958_126034831
56056	chr3	+	3927	10	ISM	ENSMUSG00000027692.17	ENSMUST00000160934.8	7108	32	383413	8	-3400	-8	3prime_fragment	FALSE	canonical	3	16	junction_1	3.16617929972778	29	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTGAGCCATGCCTTTT	2812	False	NA	NA	False	NA	NA	NA	28700775	28724726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_28700911_28703291_28703404_28704175_28704347_28705931_28706076_28708315_28708451_28715835_28715937_28718067_28718218_28719828_28719989_28720237_28720378_28722047
56057	chr2	-	1027	11	Antisense	novelGene_ENSMUSG00000027384.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	81	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCTCTAGAGAGTGAAGC	NA	False	NA	NA	False	NA	NA	NA	140045556	140012954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_140013175_140013946_140013984_140019149_140019216_140023491_140023537_140025811_140025920_140029661_140029701_140030653_140030831_140035500_140035562_140044783_140044868_140045205_140045289_140045449
56058	chr2	-	2146	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	-11	-16	intron_retention	FALSE	canonical	3	62	junction_2	8.15815883368028	8	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCGCTTTATTTGTAGAG	9370	False	NA	NA	False	NA	NA	NA	24825211	24815382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817852_24825039
56060	chr1	+	1560	10	NNC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	133.654428182681	2	62	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGAATCATTGTCGTCG	8180	False	NA	NA	False	NA	NA	NA	134333727	134339470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644_134338695_134338754
56063	chr7	+	2066	4	NNC	ENSMUSG00000074365.14	novel	2090	3	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	122.589649735295	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATCTGTGCCTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	15630072	15634223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_15630183_15631328_15631478_15632369_15633033_15633079
56064	chr1	-	3388	12	NNC	ENSMUSG00000040865.16	novel	13529	12	NA	NA	3428	2131	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	2.49627822140836	18	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCCCCAGCCCTAACTG	NA	False	NA	NA	False	NA	NA	NA	63149986	63097162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_63098305_63100198_63100357_63101194_63101413_63104862_63104997_63107342_63107453_63113480_63113706_63118111_63118221_63124826_63125558_63132443_63132691_63132798_63132890_63144814_63144919_63149867
56065	chr10	-	658	3	ISM	ENSMUSG00000075225.16	ENSMUST00000159978.2	1084	6	10985	14	10985	-11	3prime_fragment	FALSE	canonical	1	5	junction_2	1.5	40	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTCATCCAAACAAATT	NA	False	NA	NA	False	NA	NA	NA	41417860	41414855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_41415301_41415416_41415539_41417769
56066	chr4	+	3384	26	ISM	ENSMUSG00000036622.16	ENSMUST00000127833.3	3882	29	6938	1	-1791	-1	3prime_fragment	FALSE	canonical	3	40	junction_16	22.6064061717027	2	27	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCGGCACTGGTCTTG	568	False	NA	NA	False	NA	NA	NA	140721121	140734640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_140721166_140721258_140721374_140721622_140721703_140722636_140722715_140722868_140722939_140723612_140723748_140723834_140723902_140723978_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729934_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140734063_140734160_140734251
56069	chr5	+	1885	1	NIC	ENSMUSG00000029625.17	novel	1713	8	NA	NA	9608	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	11	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGCCTGTGTTTCATT	2670	False	NA	NA	False	NA	NA	NA	145116960	145118845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145117000_145118800
56070	chr1	+	1827	7	NNC	ENSMUSG00000026411.18	novel	1806	6	NA	NA	-22	248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	155.939803200537	1214	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGCAGATCTCAAGGGA	NA	False	NA	NA	False	NA	NA	NA	135935865	135962766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_135936154_135945657_135945801_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
56071	chr2	-	3666	10	ISM	ENSMUSG00000038914.16	ENSMUST00000103056.10	4281	15	18372	-1377	-8023	452	3prime_fragment	FALSE	canonical	3	75	junction_9	9.05674838769548	3	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAATAGTACTTGGAGG	9174	False	NA	NA	False	NA	NA	NA	180325771	180309628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601
56074	chr14	+	1574	1	FSM	ENSMUSG00000114919.2	ENSMUST00000225025.2	679	1	-182	-713	-182	713	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAAAGTAATTTGCTAC	NA	False	NA	NA	False	NA	NA	NA	3178313	3179887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_3178300_3179900
56075	chr14	+	2438	3	NIC	ENSMUSG00000040640.12	novel	1356	4	NA	NA	-23	1402	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	11	55	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACATTCTTGTTTGTTTGT	2371	False	NA	NA	False	NA	NA	NA	27344429	27377161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_27344572_27374643_27375441_27375662
56076	chr5	-	960	8	Antisense	novelGene_ENSMUSG00000077426.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGACCTGCAGAGTCGGCC	9618	False	NA	NA	False	NA	NA	NA	108055911	108048475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_108048511_108049738_108049801_108049885_108050004_108051135_108051258_108051523_108051722_108052573_108052760_108055053_108055142_108055760
56078	chr8	-	2660	5	NNC	ENSMUSG00000031987.7	novel	3594	5	NA	NA	-6765	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	128.308953311918	53	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATAACTGTTGTCACCTC	NA	False	NA	NA	False	NA	NA	NA	125682828	125635328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125637503_125638479_125638548_125640755_125640893_125642399_125642520_125682667
56079	chr18	+	3549	11	NNC	ENSMUSG00000073563.4	novel	4249	13	NA	NA	33550	12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	66.6544072061255	61	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTTTTTTTAAACTCGC	NA	False	NA	NA	False	NA	NA	NA	54028809	54088632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_54029027_54035923_54035966_54039671_54039742_54050046_54050196_54051870_54052106_54063140_54063227_54063349_54063435_54065265_54065412_54066521_54066618_54081119_54081227_54086316
56080	chr7	+	1803	2	Antisense	novelGene_ENSMUSG00000041775.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACCTCCTGGAAGATA	NA	False	NA	NA	False	NA	NA	NA	138437997	138439878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_138438892_138438969
56081	chr3	+	2002	5	Intergenic	novelGene_3108	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	29	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCCTCTCTCCCGGCTT	NA	False	NA	NA	False	NA	NA	NA	41428563	41447631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_41429829_41430065_41430172_41436231_41436380_41436506_41436883_41447524
56082	chr15	-	1988	12	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	-2	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	44.499419626636	250	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGAGGTGTCTTGCCCTGA	NA	False	NA	NA	False	NA	NA	NA	100567436	100538964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100539184_100539226_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
56083	chr11	+	3320	4	ISM	ENSMUSG00000020716.17	ENSMUST00000137997.2	4133	18	22453	-1229	22453	-335	3prime_fragment	TRUE	canonical	3	10	junction_3	2.86744175568088	21	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATTATTCTTGTGTTCG	8652	False	NA	NA	False	NA	NA	NA	79459586	79472103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_79459619_79459949_79459997_79461056_79461274_79469079
56085	chr7	+	3029	1	FSM	ENSMUSG00000051451.7	ENSMUST00000061767.5	3376	1	988	-641	-38	641	mono-exon	FALSE	NA	NA	NA	NA	NA	81	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGTCTTACTATTT	NA	False	NA	NA	False	NA	NA	NA	90092924	90095953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_90092900_90096000
56087	chr7	+	1637	5	NIC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	-5	0	intron_retention	FALSE	canonical	3	14	junction_2	136.143995460689	618	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTCAGTGTGTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	140795801	140798568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140795854_140796633_140796765_140796941_140797931_140798002_140798082_140798182
56088	chr17	+	2632	2	FSM	ENSMUSG00000046070.10	ENSMUST00000050714.8	2625	2	-15	8	-15	-8	multi-exon	FALSE	canonical	3	22	junction_1	0	75	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCATAGCTTGTGACCT	7760	False	NA	NA	False	NA	NA	NA	25097216	25100976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25097799_25098926
56089	chr4	-	1802	3	NNC	ENSMUSG00000046312.5	novel	4173	2	NA	NA	-34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTATTTGTTGTTTTCTTG	-26	True	NA	NA	False	NA	NA	NA	41503110	41495605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41496329_41498731_41499691_41502990
56090	chr7	-	955	6	FSM	ENSMUSG00000074227.13	ENSMUST00000108236.5	1211	6	254	2	254	-2	multi-exon	FALSE	canonical	0	0	junction_2	398.697679953119	301	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTACTATGTAGTTTGGT	723	False	NA	NA	False	NA	NA	NA	28981081	28955767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
56091	chr13	-	1580	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000074865.12	novel	1714	5	NA	NA	45	399	multi-exon	FALSE	non_canonical	0	0	junction_1	59.5328480756632	1	73	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGTCCATTAAATAACTC	NA	False	NA	NA	False	NA	NA	NA	62718968	62549907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62550414_62635060_62635805_62640180_62640241_62640621_62640742_62642510_62642567_62718874
56093	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	NA	False	NA	NA	NA	52122863	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
56094	chr2	-	1244	9	NNC	ENSMUSG00000026851.10	novel	1984	9	NA	NA	3	-666	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_8	113.962438987589	29	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATATGTTGCCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30872210	30862854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30872120
56095	chr7	+	1812	4	Antisense	novelGene_ENSMUSG00000070371.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGTAAGAAAAAAAAAAAAAA	1595	False	NA	NA	False	NA	NA	NA	127531822	127534515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_127532282_127532532_127532665_127532738_127533007_127533562
56096	chr12	+	2078	1	Intergenic	novelGene_4460	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACACAGGCATGCACAGTC	9825	False	NA	NA	False	NA	NA	NA	105013277	105015355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_105013300_105015400
56097	chr2	+	1295	10	NNC	ENSMUSG00000039041.16	novel	1535	10	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	738.963605244902	76	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	179813392	179818079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816695_179817032_179817186_179817390_179817549_179817646_179817750_179817866
56098	chr11	+	2676	1	Intergenic	novelGene_2423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGATGTCTCAACCAAA	NA	False	NA	NA	False	NA	NA	NA	80296687	80299363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_80296700_80299400
56100	chr8	+	2571	4	ISM	ENSMUSG00000052794.14	ENSMUST00000121902.2	2373	8	-32	7815	20	-5825	5prime_fragment	FALSE	canonical	3	59	junction_1	6.0184900284226	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACATAACAAAAGACCCAA	NA	False	NA	NA	False	NA	NA	NA	73197743	73206670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202
56101	chr10	+	1698	4	NIC	ENSMUSG00000002147.19	novel	3775	22	NA	NA	1300	-9	intron_retention	FALSE	canonical	1	2	junction_1	109.77552854196	60	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAACAAAATAAATAATCTA	735	False	NA	NA	False	NA	NA	NA	127493929	127496817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127494130_127494497_127494570_127495301_127495368_127495457
56103	chr11	+	2334	10	NNC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-5	-1	intron_retention	FALSE	canonical	2	12	junction_9	48.7966301204408	2	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTGCTGTCTGGGAA	NA	False	NA	NA	False	NA	NA	NA	102992546	103003022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102992615_102993507_102993923_102994060_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002364
56104	chr1	-	2546	6	NNC	ENSMUSG00000054702.15	novel	2876	5	NA	NA	0	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9.26066952223218	2	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTTAATGTTGAACTTG	NA	False	NA	NA	False	NA	NA	NA	79649685	79584601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_79584845_79585161_79586920_79591919_79592058_79601398_79601508_79602823_79603003_79649566
56106	chr9	-	1340	3	ISM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	3380	0	556	0	intron_retention	FALSE	canonical	3	124	junction_1	9	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	NA	False	NA	NA	False	NA	NA	NA	50436571	50432916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_50433637_50433828_50433900_50436022
56107	chr2	-	1294	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-37	-3	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	44.7988560121796	7	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACAGATGATTTGATCCA	9137	False	NA	NA	False	NA	NA	NA	93840813	93810984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607
56108	chr1	+	2551	1	ISM	ENSMUSG00000033964.13	ENSMUST00000039867.10	8361	11	28052	21	26780	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	33	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTCTTTGGTCCTAGTAA	NA	False	NA	NA	False	NA	NA	NA	139378171	139380722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_139378200_139380700
56109	chr6	+	3061	2	FSM	ENSMUSG00000030224.11	ENSMUST00000137235.2	331	2	-2315	-415	1870	415	multi-exon	FALSE	canonical	3	757	junction_1	0	5	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATAATTTTTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	137723907	137728089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_137726428_137727548
56110	chr14	-	1861	9	NIC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	14	2	intron_retention	FALSE	canonical	3	11	junction_6	54.3103063423509	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGAAGTGAAATTATGG	NA	False	NA	NA	False	NA	NA	NA	52542529	52532311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52532551_52533530_52533644_52533972_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52537157_52537563_52537640_52537859_52542344
56111	chr4	+	3539	3	FSM	ENSMUSG00000051351.15	ENSMUST00000069195.5	4639	3	4	1096	4	-1096	multi-exon	FALSE	canonical	2	10	junction_1	4	8	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTTGTTAAAGTTCTT	NA	False	NA	NA	False	NA	NA	NA	136013381	136020157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_136013793_136014382_136014627_136017273
56112	chr7	+	2652	20	NNC	ENSMUSG00000030769.16	novel	2396	17	NA	NA	-234	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	8.48136298041418	54	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTCAGAGGTGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	122813768	122872474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_122813907_122814069_122814221_122828131_122828215_122832210_122832328_122834436_122834508_122834820_122834978_122837346_122837419_122838591_122838697_122839961_122840022_122847160_122847266_122849293_122849400_122851635_122851717_122857576_122857783_122859729_122859866_122864411_122864520_122864809_122864961_122866971_122867141_122868245_122868462_122869063_122869233_122872223
56113	chr3	+	1485	13	NNC	ENSMUSG00000040213.14	novel	1888	14	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	37.6902580988185	1	22	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTCCGTGTTGTACTTT	NA	False	NA	NA	False	NA	NA	NA	142406843	142450098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_142406937_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440312_142440422_142443532_142443607_142443985_142444073_142449831
56114	chr17	-	1994	9	Antisense	novelGene_ENSMUSG00000071074.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAAACCCGGATGTTTGG	8649	False	NA	NA	False	NA	NA	NA	46563459	46559046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_46559253_46559764_46559961_46560100_46560209_46561333_46561381_46561493_46561589_46561717_46561849_46562036_46562159_46562292_46562413_46562490
56116	chr5	-	1560	11	NIC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-34	187	intron_retention	FALSE	canonical	3	152	junction_7	16.3291151015602	568	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTCTGATGATATGGTG	NA	False	NA	-94	True	NA	NA	NA	24628562	24624186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24624461_24624597_24624679_24624780_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
56117	chr9	+	2355	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	0	246	0	-246	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	6	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCCACCATCAAGTGGAC	2126	False	NA	NA	False	NA	NA	NA	114517857	114553124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
56119	SIRV4	+	811	3	NNC	SIRV4C	novel	950	2	NA	NA	47	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	810.5	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTTCTTTATATGTTGTT	NA	False	NA	NA	False	NA	NA	NA	1502	2767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV4_+_1583_1670_1886_2251
56121	chr9	+	3156	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	430	46	69	-46	multi-exon	FALSE	canonical	3	454	junction_8	39.8577188898467	1	153	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAACAGTTGCAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	109705076	109722917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
56122	chr11	-	871	3	NIC	ENSMUSG00000020738.17	novel	1051	4	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1909.5	3	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTTCTCTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	115427057	115413930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115414596_115421171_115421244_115426923
56123	chr7	-	1643	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	666	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	1051	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGCTGTAATACTTTAGA	NA	False	NA	NA	False	NA	NA	NA	81439213	81431263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
56124	chr11	+	1562	6	ISM	ENSMUSG00000020454.18	ENSMUST00000120721.9	2952	16	32623	3	708	2	3prime_fragment	FALSE	canonical	3	247	junction_1	25.23489647294	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATATGGCTGGTACTGTGT	NA	False	NA	NA	False	NA	NA	NA	3186252	3194583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_3186354_3189400_3189486_3190894_3191028_3192376_3192719_3193182_3193351_3193850
56125	chr12	-	1886	7	NNC	ENSMUSG00000020577.18	novel	1932	6	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	325.628836083184	655	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGGTGTTTAAATCAAAG	NA	False	NA	NA	False	NA	NA	NA	36092483	36064553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36065010_36065052_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
56126	chr3	+	1411	3	NIC	ENSMUSG00000027937.16	novel	1101	5	NA	NA	3	0	intron_retention	FALSE	canonical	3	314	junction_2	23	454	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	NA	False	NA	NA	NA	90138943	90143145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90139819_90141229_90141310_90142689
56127	chr14	-	2451	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	215	5059	215	-5059	multi-exon	FALSE	canonical	3	278	junction_2	18	124	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATAGCTTCTTCGTTTTT	NA	False	NA	NA	False	NA	NA	NA	26390823	26386171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_26387123_26387532_26387612_26389402
56128	chr3	+	1233	11	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16442	6565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5233	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACGGCGCGAGGGGTGAA	NA	False	NA	-49	True	NA	NA	NA	54636100	54642752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54636309_54636611_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640166_54641077_54641151_54641521_54641588_54641716_54641754_54642428
56131	chr17	+	1227	4	NNC	ENSMUSG00000046711.17	novel	1681	5	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1773.09152486711	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGTCTCTGGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	27775600	27782639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775686_27778506_27778678_27779901_27779973_27781739
56132	chr15	-	2498	3	FSM	ENSMUSG00000054115.13	ENSMUST00000191316.2	1391	3	-34	-1073	-21	1073	multi-exon	FALSE	canonical	3	181	junction_1	23	7	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTTAGAAAATCTATATAA	NA	False	NA	NA	False	NA	NA	NA	9140473	9126061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_9128085_9139518_9139791_9140270
56133	chr2	-	785	1	Antisense	novelGene_ENSMUSG00000027646.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCTTGCCAGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	157260588	157259803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_157259800_157260600
56134	chr13	-	2355	8	NNC	ENSMUSG00000114027.2	novel	2349	5	NA	NA	-13362	386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6.67618368317024	8	13	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTCAGCTTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	66416715	66396708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66398011_66399135_66399260_66400350_66400405_66401557_66401730_66401877_66402298_66403192_66403335_66408737_66408816_66416652
56138	chr11	+	2078	8	NIC	ENSMUSG00000007850.17	novel	4577	11	NA	NA	-1002	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_7	181.85226118462	1	89	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	50272771	50277355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274718_50275470_50275564_50276603
56139	chr8	+	1377	11	NIC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	62.3057782232114	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAATCTTAGCTGTGAT	8860	False	NA	NA	False	NA	NA	NA	46428564	46449890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
56141	chr17	-	1036	7	NNC	ENSMUSG00000024436.17	novel	1079	7	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	495.928310231316	8	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTCTTGACTCCCTTTG	4297	False	NA	NA	False	NA	NA	NA	36227280	36221276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225492_36225633_36225697_36227183
56142	chr7	-	2530	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	29	978	-18	-48	multi-exon	FALSE	canonical	3	349	junction_15	41.3256881370413	1	84	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGATTTCCCATGGCT	9362	False	NA	NA	False	NA	NA	NA	44803968	44791306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
56143	chr7	-	2527	13	ISM	ENSMUSG00000037032.17	ENSMUST00000189378.7	2878	14	7086	-17	-3	0	3prime_fragment	FALSE	canonical	3	117	junction_6	14.3701078631999	2	95	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTCTTCCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	105223612	105207692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888
56144	chr5	+	1605	10	NIC	ENSMUSG00000079109.12	novel	2826	11	NA	NA	-3	307	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	25.407785333546	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGCCAAGCGCTTCAA	NA	False	NA	NA	False	NA	NA	NA	143846839	143862604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_143846898_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038
56145	chr4	+	1047	8	ISM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	20	1539	12	185	5prime_fragment	FALSE	canonical	3	277	junction_3	35.5045268743498	32	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCCAAGAAGTGGATGCG	-11	True	NA	NA	False	NA	NA	NA	44981414	44989195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919
56146	chr6	-	2238	3	ISM	ENSMUSG00000030322.13	ENSMUST00000147282.4	2924	8	1	6053	1	-705	5prime_fragment	FALSE	canonical	3	62	junction_2	22	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGGGCTTTCCACACTT	7888	False	NA	NA	False	NA	NA	NA	115830325	115825357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_115826694_115827578_115827801_115829645
56147	chr1	+	3125	3	FSM	ENSMUSG00000025931.16	ENSMUST00000189400.7	5330	3	-26	2231	-26	-1636	multi-exon	FALSE	canonical	3	9	junction_2	2.5	24	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGTTTTGTGTTCTT	9074	False	NA	NA	False	NA	NA	NA	20960803	21007643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_20960911_21002283_21002464_21004805
56148	chr11	-	1397	3	NIC	ENSMUSG00000018678.14	novel	3055	7	NA	NA	44	-6518	combination_of_known_splicesites	FALSE	canonical	3	301	junction_2	103	136	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATAACAGCAAGAATGAG	NA	False	NA	NA	False	NA	NA	NA	96868493	96851562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96852836_96854190_96854268_96868446
56149	chr19	-	2602	20	FSM	ENSMUSG00000001750.17	ENSMUST00000001801.11	2688	20	66	20	-27	-20	multi-exon	FALSE	canonical	3	39	junction_12	8.58007741992203	110	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTGGCTGGCCCAGGAA	NA	False	NA	NA	False	NA	NA	NA	3957067	3946069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
56151	chr7	+	3245	22	Antisense	novelGene_ENSMUSG00000062444.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	137	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGAGGAATGGGATGCAC	8048	False	NA	NA	False	NA	NA	NA	81112988	81143410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_81113655_81113833_81113946_81114199_81114251_81114378_81114560_81114887_81115006_81115404_81115510_81115915_81116038_81117182_81117370_81121569_81121749_81122749_81122858_81123134_81123270_81123604_81123666_81126024_81126099_81126487_81126546_81126695_81126980_81127067_81127247_81127335_81127408_81127659_81127821_81134179_81134268_81134581_81134659_81134785_81134857_81143254
56152	chr2	-	1014	8	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1537.19853855602	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9606	False	NA	NA	False	NA	NA	NA	10085219	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064595_10068885_10069123_10073420_10073553_10074503_10074539_10085158
56153	SIRV6	+	1953	1	FSM	SIRV6A	SIRV603	1969	1	-9	25	-9	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	1	107	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAGGGTAAATATCACAAA	NA	False	NA	NA	False	NA	NA	NA	8990	10943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_9000_10900
56154	chr3	+	1766	2	NNC	ENSMUSG00000027811.10	novel	1970	2	NA	NA	115	-5	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	0	1	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATTTCCGTTTCTTTAG	4484	False	NA	NA	False	NA	NA	NA	79536500	79540122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79536580_79538435
56155	chr3	+	2430	2	FSM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	3	0	1	0	multi-exon	FALSE	canonical	3	15	junction_1	0	34	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCCATTCTGTTTTTT	1254	False	NA	NA	False	NA	NA	NA	37366705	37375599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_37366735_37373198
56156	chr4	+	2800	7	Antisense	novelGene_ENSMUSG00000036002.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	40	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCCTGGGGACATCTGAA	NA	False	NA	NA	False	NA	NA	NA	43032413	43036789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43033694_43033816_43033988_43034084_43034158_43034378_43034538_43034660_43034765_43034942_43035001_43035834
56157	chrX	-	2581	5	NNC	ENSMUSG00000050424.10	novel	2287	2	NA	NA	-2590	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	34.7230111021495	246	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGAATGTTCTGGCTA	NA	False	NA	NA	False	NA	NA	NA	72083299	72077606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72077934_72078769_72080775_72080895_72080952_72081548_72081672_72083229
56158	chr12	-	4444	27	NIC	ENSMUSG00000021068.18	novel	4723	29	NA	NA	-2	-6	combination_of_known_junctions	TRUE	canonical	3	13	junction_20	7.89623908680432	21	28	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAACAATAAAATAAAATTT	NA	False	NA	NA	False	NA	NA	NA	70149630	70065539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_70066037_70067607_70067806_70072153_70072256_70073527_70073678_70074785_70074966_70076759_70076907_70077656_70077771_70078430_70078554_70081930_70082045_70085312_70085526_70087360_70087431_70087528_70087655_70091920_70092412_70093926_70094049_70095797_70095937_70097438_70097529_70097913_70098025_70101161_70101337_70101604_70101746_70102080_70102218_70102645_70102814_70103425_70103573_70107924_70108116_70109462_70109503_70124885_70125056_70137309_70137392_70149424
56159	chr9	-	1404	6	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	262.233941357712	41	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTAATTTGTTTTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	31043097	31000703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31006896_31019975_31020027_31042841
56163	chr4	-	2044	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-592	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	150	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9608	False	NA	NA	False	NA	NA	NA	141812207	141758302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141759406_141764715_141765245_141811795
56164	chr14	-	2147	2	NNC	ENSMUSG00000022159.17	novel	3576	3	NA	NA	4392	-712	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTCTGTACCTTTGC	NA	False	NA	NA	False	NA	NA	NA	52502171	52499939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52500232_52500316
56165	chr18	+	2376	4	FSM	ENSMUSG00000025880.12	ENSMUST00000026999.10	4278	4	1896	6	435	-6	multi-exon	FALSE	canonical	3	1522	junction_2	99.0667563929607	193	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCATCCCTTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	75502495	75529000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_75502640_75503965_75504020_75508944_75509020_75526897
56168	chr7	-	1094	2	FSM	ENSMUSG00000030403.10	ENSMUST00000161488.2	441	2	-11	-642	-11	-13	multi-exon	FALSE	canonical	3	1460	junction_1	0	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAATGCAAAGGTCTCT	9144	False	NA	NA	False	NA	NA	NA	18992067	18990866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_18991680_18991786
56169	chr11	-	625	6	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-4	356	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	75.8999341238186	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGCTCCATTCCCCCA	NA	False	NA	NA	False	NA	NA	NA	4391086	4373711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4373796_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
56170	chr5	+	1203	9	NNC	ENSMUSG00000036323.15	novel	3625	19	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	100.425034229519	16	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTTTCGGTATTGGCAT	NA	False	NA	NA	False	NA	NA	NA	77122554	77147781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132232_77147412
56171	chr6	+	501	1	FSM	ENSMUSG00000047905.11	ENSMUST00000120174.2	465	1	47	-83	47	83	mono-exon	FALSE	NA	NA	NA	NA	NA	171	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAGAGTTGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67182649	67183150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67182600_67183200
56172	chr1	+	1999	9	NNC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	90.3879658748885	1	83	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCACCTTTGCTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	171097912	171104461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171097985_171098152_171098260_171098856_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
56173	chr6	-	1197	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	31	0	31	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9997	False	NA	NA	False	NA	NA	NA	125471723	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
56174	chr2	+	326	2	Genic_Genomic	ENSMUSG00000084383.2	novel	483	1	NA	NA	-26	43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAGAACAATGTTA	NA	False	NA	NA	False	NA	NA	NA	24875969	24876521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_24875977_24876202
56175	chr15	-	1237	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-25	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	668.527776352712	3	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTGTGTGTATTTA	NA	False	NA	NA	False	NA	NA	NA	51728875	51649958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705872_51706021_51728721
56176	chr1	-	2047	14	NIC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	80	-2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	53.5654220357669	5	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATGGTTCTGGAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	36722184	36601778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_36602102_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
56177	chr14	+	1484	3	FSM	ENSMUSG00000040822.8	ENSMUST00000228027.2	811	3	-57	-616	-36	-12	multi-exon	FALSE	canonical	3	26	junction_1	179.5	1146	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAGAAAGAAATAATTACT	NA	False	NA	NA	False	NA	NA	NA	54923636	54928186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_54924111_54924493_54924578_54927260
56178	chr15	-	1852	7	NNC	ENSMUSG00000038736.11	novel	2163	2	NA	NA	6911	-8037	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	116.987178784686	2	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTACACCTGATGGCAG	NA	False	NA	NA	False	NA	NA	NA	44284270	44258414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_44259214_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114
56179	chr1	+	2834	16	ISM	ENSMUSG00000026519.17	ENSMUST00000161523.8	3258	23	12173	-3	-3859	3	3prime_fragment	FALSE	canonical	3	29	junction_7	8.40211613556701	2	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTCTCATGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	180783772	180802671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
56180	chrX	-	2168	6	FSM	ENSMUSG00000023074.12	ENSMUST00000096447.9	1773	6	10	-405	10	-5	multi-exon	FALSE	canonical	3	89	junction_3	3.77359245282264	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAAGCTCTGTTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	52459369	52433479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_52434867_52436580_52436743_52444532_52444751_52446286_52446363_52446450_52446705_52459298
56181	chr4	-	1281	3	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	492	2	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127222933	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219572_127219892_127220565_127222868
56183	chr1	-	1433	10	NNC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	76.5724058217667	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGGTGTGTGGTTCATAC	NA	False	NA	NA	False	NA	NA	NA	194813830	194786099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813672
56184	chr9	+	2116	2	ISM	ENSMUSG00000041064.15	ENSMUST00000131483.3	3309	13	6426	3	6421	0	3prime_fragment	FALSE	canonical	3	160	junction_1	0	77	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	NA	False	NA	NA	NA	65500928	65503246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_65501861_65502062
56185	chr9	+	2366	16	NNC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	43	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	101.322367827752	2	125	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTTGTGGGGGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	114230218	114303439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_114230338_114246028_114246199_114249420_114249572_114250705_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
56186	chrX	+	2532	6	Fusion	ENSMUSG00000081137.4_ENSMUSG00000087159.8	novel	539	6	NA	NA	1533	136	multi-exon	FALSE	canonical	1	1	junction_1	1.93907194296653	22	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAGTGTCTTCATTAGAA	NA	False	NA	NA	False	NA	NA	NA	168105150	168153135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_168105270_168105745_168105839_168105997_168106098_168113693_168113776_168143982_168144096_168151110
56187	chr16	-	1086	11	NNC	ENSMUSG00000022748.9	novel	1150	10	NA	NA	66988	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	95.8743448478267	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGCAGACAGTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	57360151	57122368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826_57143907_57265303_57265355_57360079
56188	chr8	-	2969	21	NNC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	2	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	146.046773329643	1	202	15	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	73175302	73094838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132927_73133000_73133952_73134151_73134737_73134900_73135260_73135311_73136159_73136257_73136523_73136645_73138586_73138769_73140704_73140961_73145728_73145860_73150077_73150141_73150745_73150842_73153474_73153617_73175228
56189	chr12	-	1579	9	FSM	ENSMUSG00000021118.8	ENSMUST00000021544.8	1583	9	2	2	2	-2	multi-exon	FALSE	canonical	3	37	junction_6	8.60868021243675	129	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTATGGTTCTTGTAGT	NA	False	NA	NA	False	NA	NA	NA	78953736	78935466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_78936082_78936685_78936765_78938902_78938987_78940850_78940953_78941161_78941350_78941646_78941739_78942905_78943088_78946828_78946994_78953664
56190	chr4	-	383	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	53	1	0	0	multi-exon	FALSE	canonical	3	959	junction_1	21	2170	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	NA	False	NA	NA	NA	132080944	132079244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132079555_132079973_132080010_132080907
56191	chr11	-	1326	11	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	526.783446968486	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190831	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179773_119183651_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186971_119190653
56193	chr18	-	141	1	Intergenic	novelGene_4526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTCAAAACAACAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	35005045	35004904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_35004900_35005000
56194	chr16	+	2825	1	Intergenic	novelGene_3593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	68	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAAGCACTTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	12876217	12879042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_12876200_12879000
56197	chr6	-	1489	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	20	7	20	-7	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	1149	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTAAGTGTTGTGTGTTC	-15	True	NA	NA	False	NA	NA	NA	4086952	4076905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
56198	chr2	+	1406	10	Antisense	novelGene_ENSMUSG00000027406.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	71	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTCGCGGGGGAAGTGAC	NA	False	NA	36	True	NA	NA	NA	130121238	130126348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_130121643_130122355_130122524_130123074_130123235_130123325_130123465_130123559_130123697_130123772_130123830_130125632_130125749_130125856_130125959_130126092_130126168_130126300
56199	chr2	-	2899	1	ISM	ENSMUSG00000035236.18	ENSMUST00000038874.12	10709	18	121618	4	30294	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	39	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTTTTGTGTATTTCTT	NA	False	NA	NA	False	NA	NA	NA	38959128	38956229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_38956200_38959100
56201	chr6	+	1284	5	NNC	ENSMUSG00000029910.15	novel	1725	5	NA	NA	0	-11	intron_retention	FALSE	non_canonical	0	0	junction_4	397.81025627804	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATGTTTTATAAAAATC	NA	False	NA	NA	False	NA	NA	NA	66512451	66517964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66513089_66514552_66514674_66515948_66516053_66516754_66517028_66517815
56202	chr11	+	1622	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	180	0	180	0	multi-exon	FALSE	canonical	3	373	junction_8	104.461715475096	1	69	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1410	False	NA	NA	False	NA	NA	NA	101010943	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
56203	chr11	-	736	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	114	11	68	-11	multi-exon	FALSE	canonical	3	9692	junction_2	172	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCTACTAACAAGGACCT	NA	False	NA	NA	False	NA	NA	NA	70545356	70542686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
56204	chr4	-	1539	4	NNC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	31	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	233.709696465984	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTTTCGTTTCCTTATGT	0	True	NA	NA	False	NA	NA	NA	41741289	41738498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41739581_41740549_41740643_41740775_41740960_41741109
56205	chr5	-	2243	6	NNC	ENSMUSG00000087477.2	novel	346	2	NA	NA	-14635	-5884	intron_retention	FALSE	non_canonical	0	0	junction_1	0	64	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTGCCGAGGGACCAGA	NA	False	NA	NA	False	NA	NA	NA	115075971	115061260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115061667_115066079_115066364_115067897_115068060_115070778_115071027_115073980_115074128_115074975
56206	chr14	-	1725	9	NNC	ENSMUSG00000021917.17	novel	949	4	NA	NA	-10317	-1004	intron_retention	TRUE	non_canonical	0	0	junction_1	0	277	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGGTTGTCCGTGCCCCTC	NA	False	NA	NA	False	NA	NA	NA	30733946	30723356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30723384_30728413_30728468_30728587_30728681_30730602_30730824_30731690_30732121_30732251_30732364_30732817_30732988_30733077_30733190_30733440
56207	chr4	-	1983	14	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	1	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	138.11040948133	1	92	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGCCCCGTCCCACTTGT	NA	False	NA	NA	False	NA	NA	NA	149251116	149234488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149234903_149234973_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246137_149249566_149249687_149250463_149250540_149251043
56208	chr10	-	3698	16	ISM	ENSMUSG00000000374.9	ENSMUST00000000384.8	5047	23	33130	61	-2277	-61	3prime_fragment	FALSE	canonical	2	6	junction_11	3.07245829914744	40	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGGAAGTCATAGATTGT	NA	False	NA	NA	False	NA	NA	NA	78047345	78022619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_78023929_78024589_78024785_78029192_78029371_78032121_78032293_78033571_78033699_78034877_78034979_78036451_78036682_78037265_78037425_78038713_78038856_78039714_78040227_78043267_78043381_78043725_78043867_78045217_78045310_78046211_78046289_78046597_78046713_78047309
56210	chr11	+	1518	7	NNC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	18	0	intron_retention	FALSE	non_canonical	3	16	junction_6	51.0906057901059	95	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	NA	False	NA	NA	NA	102992569	103003026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102992615_102993507_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995359_103002437
56211	chr4	+	2374	14	NNC	ENSMUSG00000045751.17	novel	4478	24	NA	NA	-7305	292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	58.5795367869832	1	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATTCAGAGCTCAAATGG	NA	False	NA	NA	False	NA	NA	NA	24529042	24600276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_24529164_24532902_24533020_24533065_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154
56214	chr3	+	1008	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	146	6	146	-6	multi-exon	FALSE	canonical	3	1657	junction_1	0	3209	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAATTTAGTTTCACACT	NA	False	NA	NA	False	NA	NA	NA	122717997	122719827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_122718306_122719127
56215	chr17	+	3824	18	ISM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	25813	16482	-7755	780	internal_fragment	FALSE	canonical	3	287	junction_4	32.6029909256963	20	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTAGCTTCTATTGT	NA	False	NA	NA	False	NA	NA	NA	15951041	15976390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_15951280_15952115_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182
56216	chr12	-	1650	4	NNC	ENSMUSG00000021266.17	novel	2764	10	NA	NA	7503	-9	intron_retention	FALSE	non_canonical	0	0	junction_2	905.746223962442	1	63	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGCTCCTGTCTGTCACT	2165	False	NA	NA	False	NA	NA	NA	108833704	108825968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828820_108832152_108832226_108833602
56217	chr11	+	1864	8	ISM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	550	1	0	-1	intron_retention	FALSE	canonical	3	72	junction_2	52.4917875014944	7	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGTCTCCTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	5049475	5056090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432
56218	chr3	+	2141	6	FSM	ENSMUSG00000027703.17	ENSMUST00000108265.3	2092	6	86	-135	86	3	multi-exon	FALSE	canonical	3	7	junction_1	18.0177690072883	76	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTGTGGGAAGAATGATA	NA	False	NA	NA	False	NA	NA	NA	30702120	30726583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30702410_30704053_30705102_30709785_30709960_30713202_30713342_30714049_30714247_30726289
56220	chr9	+	1166	9	NNC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	19	12	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_3	615.434488288559	7435	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACTTTCTCTGTGGCAA	NA	False	NA	NA	False	NA	NA	NA	54858117	54865326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54858188_54859365_54859393_54859624_54859701_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
56222	chr19	+	1998	9	NNC	ENSMUSG00000024921.18	novel	876	7	NA	NA	85	-12	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7.69740215917033	43	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGTACCTTGACTCTGTCG	NA	False	NA	NA	False	NA	NA	NA	26693368	26755709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_26693393_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
56223	chr5	+	3462	26	FSM	ENSMUSG00000061576.16	ENSMUST00000101471.4	4491	26	7	1022	7	18	multi-exon	TRUE	canonical	2	5	junction_22	2.910395162173	17	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAACACCTGCTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	27466979	27931476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_27467360_27587752_27587868_27603911_27604011_27656185_27656281_27674408_27674484_27742979_27743033_27762549_27762632_27803799_27803921_27836376_27836532_27839506_27839605_27857174_27857299_27858697_27858737_27866584_27866693_27868427_27868520_27869710_27869759_27871407_27871527_27901847_27901896_27914447_27914547_27917605_27917676_27919369_27919565_27923451_27923507_27926042_27926155_27927670_27927730_27928369_27928443_27928538_27928613_27930602
56224	chrX	+	1525	11	NIC	ENSMUSG00000031105.17	novel	1760	11	NA	NA	2	3	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	33.2180673730426	271	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTTGTCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	47712291	47751174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_47712386_47712550_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
56225	chrX	+	1275	9	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	767.492793125773	2	54	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	False	NA	NA	False	NA	NA	NA	52077025	52110536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105225_52105307_52108981_52109029_52109199_52109277_52109943
56226	chr10	+	2479	6	Intergenic	novelGene_3546	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_3	50.1174620267228	1	75	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTGGGAACATGGCAGCA	NA	False	NA	NA	False	NA	NA	NA	120359261	120366436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120361311_120361378_120363521_120363638_120364338
56227	chr6	+	229	1	ISM	ENSMUSG00000029823.17	ENSMUST00000163047.8	3141	9	174	53304	-6	-2271	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCGCACCTCCCCCACC	NA	False	NA	NA	False	NA	NA	NA	38528442	38528671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_38528400_38528700
56228	chr19	-	976	8	Fusion	ENSMUSG00000038155.12_ENSMUSG00000060803.7	novel	797	7	NA	NA	-18	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	1219.87843154763	7	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTGTAAGACAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	4092236	4085422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4085664_4090319_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
56230	chr17	-	2461	7	NNC	ENSMUSG00000079553.12	novel	2357	11	NA	NA	20	342	intron_retention	FALSE	canonical	0	0	junction_6	158.843388978648	1	107	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACACCTAGGCCCTGGGG	9778	False	NA	NA	False	NA	NA	NA	34109550	34101233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105874_34109447
56231	chr10	-	4747	33	FSM	ENSMUSG00000038122.10	ENSMUST00000099739.5	7240	33	37	2456	37	-2456	multi-exon	TRUE	non_canonical	1	5	junction_4	4.26639759486853	11	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGTGGCAGTGGATATT	NA	False	NA	NA	False	NA	NA	NA	56104748	55892844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_55893801_55903994_55904184_55916234_55916376_55924958_55925114_55925857_55925974_55927484_55927555_55940569_55940654_55948571_55948698_55963626_55963721_55964401_55964511_55965812_55965936_55999606_55999696_56005156_56005274_56026889_56027009_56027861_56027950_56031775_56031915_56037230_56037314_56038106_56038309_56046939_56047068_56049937_56050081_56053587_56053681_56056575_56056717_56063838_56063930_56068935_56068996_56071451_56071597_56072503_56072566_56072653_56072758_56072883_56072963_56074530_56074657_56077983_56078053_56091045_56091215_56100659_56100822_56104573
56234	chr19	+	2353	5	NIC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	35	junction_3	6.21992765231236	16	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	NA	False	NA	NA	NA	6973533	6976414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6973893_6974063_6975735_6975876_6975934_6976025_6976137_6976259
56235	chr3	+	2489	8	NIC	ENSMUSG00000045328.12	novel	7910	46	NA	NA	-2763	-87	intron_retention	FALSE	canonical	3	206	junction_2	29.1876406608506	2	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAATCTTTCCAGATGGG	NA	False	NA	NA	False	NA	NA	NA	134962239	134979285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_134962457_134964952_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
56237	chr17	+	1121	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	15	-2	15	2	multi-exon	FALSE	canonical	3	317	junction_1	34	1473	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTCTATTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	80531884	80535928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_80532100_80533049_80533194_80535166
56240	chr5	+	1103	6	ISM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	29	35775	29	-2	5prime_fragment	FALSE	canonical	3	1057	junction_5	106.091281451399	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGAGCACCAGCAGTGGAT	795	False	NA	NA	False	NA	NA	NA	75735643	75781607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506
56242	chr13	-	2307	4	NNC	ENSMUSG00000021215.16	novel	3871	10	NA	NA	948	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	96.8067949864861	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTTCTCTCCTGGTGGT	NA	False	NA	NA	False	NA	NA	NA	3936603	3932562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_3934474_3934802_3934990_3936047_3936236_3936582
56243	chr11	+	1625	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	89	74	56	-74	multi-exon	FALSE	canonical	3	378	junction_10	43.4117879536576	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCTCCTTTCTGAAATA	NA	False	NA	NA	False	NA	NA	NA	60345505	60359506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
56245	chr16	-	3703	8	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	-3	5581	intron_retention	FALSE	non_canonical	0	0	junction_3	485.725336008753	3	158	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTAGCAGCCTTATGT	8113	False	NA	NA	False	NA	NA	NA	4867724	4838135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4838233_4839201_4839295_4844371_4844549_4847362_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597
56247	chr1	+	3243	14	NIC	ENSMUSG00000015222.19	novel	4981	15	NA	NA	0	400	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	4.07909956417318	24	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGACCTCTTGATCAAAG	NA	False	NA	NA	False	NA	NA	NA	66214474	66479515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_66214655_66290820_66290872_66361562_66361628_66401361_66401440_66419647_66419933_66438547_66438662_66440602_66440681_66459293_66459356_66460804_66460950_66464355_66464688_66470685_66470779_66472672_66472755_66477412_66477526_66477950
56248	chr4	-	1942	2	ISM	ENSMUSG00000078584.10	ENSMUST00000046260.13	657	6	-13	4255	-6	-4165	5prime_fragment	FALSE	canonical	3	317	junction_1	0	188	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACATACACACATGCAGGC	NA	False	NA	NA	False	NA	NA	NA	119089888	119087833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_119089667_119089779
56250	chr1	-	886	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2500.70481731318	13	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174626	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172813_16172915_16173054_16173391_16173559_16173733_16173909_16174588
56251	chr11	+	1807	1	Intergenic	novelGene_2275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCACTGATGGCCTTAT	312	False	NA	NA	False	NA	NA	NA	52256579	52258386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_52256600_52258400
56253	chr11	+	301	1	Intergenic	novelGene_2274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCTCCAGCCCCCAACC	-3	True	NA	NA	False	NA	NA	NA	52256264	52256565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_52256300_52256600
56254	chr7	+	1227	2	FSM	ENSMUSG00000047751.10	ENSMUST00000168457.3	1227	2	0	0	0	0	multi-exon	FALSE	canonical	3	805	junction_1	0	1590	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	NA	NA	NA	139523701	139525025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_139524343_139524439
56256	chr2	+	890	3	Genic_Genomic	ENSMUSG00000083097.4	novel	435	1	NA	NA	-117	450	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTCTCGTTTACTTAAAA	NA	False	NA	NA	False	NA	NA	NA	153667973	153668975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_153668220_153668274_153668544_153668600
56257	chr2	+	3301	12	ISM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	10	32391	10	-31190	5prime_fragment	FALSE	canonical	3	171	junction_5	28.4631122741449	5	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCACCTTTCCCCTTCATT	1688	False	NA	NA	False	NA	NA	NA	5956289	6029123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093
56259	chr8	+	1688	13	NNC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	1	41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	74.8102692742707	12	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAATTCCTTGAATATTC	8867	False	NA	NA	False	NA	NA	NA	46428571	46449938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46428594_46428670_46428815_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
56260	chr13	-	3980	10	FSM	ENSMUSG00000021567.16	ENSMUST00000022051.14	4016	10	19	17	0	-17	multi-exon	FALSE	canonical	2	3	junction_1	1.49897084035912	11	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTCGCAGGAGTGAAGTG	NA	False	NA	NA	False	NA	NA	NA	73995731	73966669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_73969657_73970808_73970937_73971390_73971476_73972367_73972513_73973184_73973281_73973802_73973931_73974995_73975057_73995031_73995136_73995388_73995425_73995521
56261	chr8	+	1391	6	NIC	ENSMUSG00000002395.15	novel	854	8	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	608	junction_1	109.179851621075	47	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCACATGTCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	71819859	71822371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821948_71822170
56262	chr2	-	1559	10	FSM	ENSMUSG00000026767.13	ENSMUST00000194533.6	1843	10	27	257	10	112	multi-exon	FALSE	canonical	0	0	junction_9	51.3963057710725	66	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	NA	False	NA	NA	NA	12424232	12352330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12423969
56263	chr9	+	1726	5	FSM	ENSMUSG00000010067.14	ENSMUST00000010211.7	1727	5	0	1	0	-1	multi-exon	FALSE	canonical	3	50	junction_4	9.63068014212911	210	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTTTTGGACTCTATAG	NA	False	NA	NA	False	NA	NA	NA	107431781	107439461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
56265	chr12	+	2936	13	FSM	ENSMUSG00000021185.17	ENSMUST00000069782.11	3295	13	91	268	12	-6	multi-exon	FALSE	canonical	2	6	junction_10	4.43471156521669	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAGAGAAAATCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	100745406	100838601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100745570_100795857_100795985_100801443_100801595_100804758_100804958_100807629_100807781_100808901_100809025_100810988_100811190_100816371_100816633_100819472_100819573_100823179_100823329_100825791_100825912_100833362_100833515_100837562
56266	chr9	+	1430	4	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	35	-2898	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_2	1258.92264346235	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGTTGGTGGTCCTGTA	NA	False	NA	NA	False	NA	NA	NA	20563425	20574982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20563494_20566657_20566877_20573073_20573705_20574470
56267	chr7	-	1240	3	NNC	ENSMUSG00000040139.15	novel	1126	4	NA	NA	-247	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86	189	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCTGGCTTGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	137012738	136977299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_136978040_136989300_136989431_137012368
56268	chr10	-	3153	19	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	456	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	234.107821787787	1	201	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCGGAGTGGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	62175865	62104884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105186_62105564_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117594_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125951_62126173_62128092_62128249_62131481_62131659_62131774_62131875_62132455_62132552_62134928_62135040_62140498_62140641_62151164_62151330_62175791
56269	chr12	+	781	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	-9	228	-9	-228	multi-exon	FALSE	canonical	3	121	junction_2	13	394	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTTTACCACATAT	NA	False	NA	NA	False	NA	NA	NA	9079987	9086166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_9080197_9084921_9085089_9085761
56270	chr16	-	1517	10	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	124	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_6	39.6842475822944	4	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	NA	False	NA	NA	NA	93400555	93380344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93393185_93393224_93396099_93396196_93398525_93398687_93400453
56272	chr1	+	1428	4	NNC	ENSMUSG00000038793.9	novel	1620	4	NA	NA	18	1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	119.074206554848	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTGTTTCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	180762604	180765966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180762925_180764111_180764359_180764748_180764820_180765176
56273	chr16	-	1438	8	NNC	ENSMUSG00000022898.14	novel	2547	8	NA	NA	0	-660	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	127.14991954703	5	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAACAGTGGCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	94327276	94299301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305230_94306252_94306304_94311596_94311747_94313088_94313233_94327196
56274	chr5	+	1763	8	NNC	ENSMUSG00000107385.4	novel	1714	7	NA	NA	18	375	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6.02037357305871	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCAGGCTAGTGGCGGT	8050	False	NA	NA	False	NA	NA	NA	67621263	67635350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991_67626159_67630869_67631405_67634249_67634626_67635222
56276	chr4	+	988	6	ISM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	314	7351	-13	2755	5prime_fragment	FALSE	canonical	3	1513	junction_5	129.866700889797	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTTTTATTACGTATT	NA	False	NA	NA	False	NA	NA	NA	107035909	107050842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495
56277	chr10	-	1757	3	FSM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	721	junction_1	4.5	532	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTCTCATCGGCGCCA	NA	False	NA	NA	False	NA	NA	NA	59787658	59785490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_59786852_59787138_59787395_59787518
56278	chr7	-	1373	10	NIC	ENSMUSG00000030839.13	novel	2551	12	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	28.5090412342956	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATTCCCTGGAGAACCC	NA	False	NA	NA	False	NA	NA	NA	46289219	46092594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
56280	chr14	+	1305	7	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	104737	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	260.086951272497	11	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	NA	False	NA	NA	NA	122600189	122639646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122600529_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
56282	chr2	+	3441	19	NNC	ENSMUSG00000026821.17	novel	3590	18	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.1493080161299	35	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCTGGTCACTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	28403329	28443083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_28403337_28403483_28403573_28430722_28430834_28432301_28432496_28432866_28432963_28433565_28433760_28434000_28434399_28435021_28435238_28435426_28435531_28435872_28435958_28437163_28437233_28437545_28437633_28438124_28438158_28438395_28438518_28438681_28438778_28438966_28439169_28439301_28439545_28440460_28440576_28442103
56283	chr15	+	2948	11	FSM	ENSMUSG00000022414.9	ENSMUST00000023050.9	2964	11	16	0	-14	0	multi-exon	FALSE	canonical	3	51	junction_3	7.29109045342327	134	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCATCTTGTCTATCTG	5009	False	NA	NA	False	NA	NA	NA	80017343	80045908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80017390_80032427_80032565_80032887_80033042_80033982_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
56284	chr10	+	1424	5	NIC	ENSMUSG00000078440.11	novel	1444	5	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	318.019653480724	91	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	81220329	81224186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073_81223315_81223540
56285	chr9	-	2368	2	Antisense	novelGene_ENSMUSG00000032526.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCGGGAGCCCCCGAGTC	NA	False	NA	NA	False	NA	NA	NA	121541987	121539452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_121539537_121539703
56286	chr11	-	1723	12	NNC	ENSMUSG00000018669.15	novel	2201	13	NA	NA	-80	29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	524.916002725536	1	83	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGAGCCTGCTTGAAGT	NA	False	NA	NA	False	NA	NA	NA	96807013	96798612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800841_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96804176_96804309_96804497_96804623_96806980
56287	chr8	+	1661	5	FSM	ENSMUSG00000036810.17	ENSMUST00000127490.8	1643	5	-18	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	72.261244799685	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTGGTTAGAGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	88845396	88861738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_88845498_88846407_88846480_88856322_88856433_88856974_88857030_88860415
56288	chr4	-	1289	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	2388	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127220566	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127219527_127219776
56289	chrX	+	1309	6	NIC	ENSMUSG00000000355.14	novel	764	4	NA	NA	191	98	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	233.438985604376	115	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	NA	False	NA	NA	NA	37689722	37702401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
56290	chr3	-	1578	4	NIC	ENSMUSG00000040374.14	novel	2051	5	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	25.9786236911983	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCTCTGGGATGATTGT	NA	False	NA	NA	False	NA	NA	NA	5641204	5625571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_5626825_5628224_5628333_5628679_5628790_5641097
56291	chr13	-	2473	4	NNC	ENSMUSG00000069184.5	novel	4153	5	NA	NA	13	572	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	12.0277457017791	1	72	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGGAAACAGATAGCAGAT	NA	False	NA	NA	False	NA	NA	NA	74538942	74518972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74520947_74524554_74524639_74526730_74526986_74538782
56292	chr19	+	2259	6	FSM	ENSMUSG00000025025.15	ENSMUST00000111737.3	2340	6	220	-139	-63	0	multi-exon	FALSE	canonical	3	157	junction_1	29.7859027058103	132	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGAGTTGTGTGTTAATGT	4634	False	NA	NA	False	NA	NA	NA	53318063	53361724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_53318152_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
56293	chr12	+	2167	7	FSM	ENSMUSG00000057469.9	ENSMUST00000020908.9	2418	7	248	3	61	-3	multi-exon	FALSE	canonical	2	127	junction_1	56.1505911713215	92	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTGCTGCGTGCCTGTGT	7658	False	NA	NA	False	NA	NA	NA	16861225	16876750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_16861317_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
56295	chr11	+	1116	10	NNC	ENSMUSG00000017421.19	novel	1562	12	NA	NA	-6	91	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	426.928565453285	1	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTCCCTGCTTATACAC	NA	False	NA	NA	False	NA	NA	NA	80274150	80285200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276852_80278627_80278755_80279811_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111
56296	chr3	+	1714	7	Antisense	novelGene_ENSMUSG00000019528.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	196	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCGCAGGCTCAAGCCCA	NA	False	NA	NA	False	NA	NA	NA	20176247	20209272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_20177028_20179420_20179641_20192178_20192306_20204700_20204869_20205119_20205294_20206895_20207030_20209161
56297	chr14	-	1932	13	Antisense	novelGene_ENSMUSG00000104926.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAGAACCATTGCGCAG	7482	False	NA	NA	False	NA	NA	NA	29715106	29700362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_29700544_29704553_29704727_29705985_29706101_29707886_29708011_29708272_29708406_29708876_29708974_29709209_29709308_29710144_29710304_29710912_29711002_29711612_29711756_29712658_29712926_29713548_29713711_29714915
56298	chr14	-	1046	7	NNC	ENSMUSG00000022108.9	novel	1796	6	NA	NA	0	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	294.416937918547	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAACCATTATCTTAA	NA	False	NA	NA	False	NA	NA	NA	73622729	73600354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449_73622593_73622653
56299	chr10	-	1833	6	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	50	-133	combination_of_known_junctions	FALSE	canonical	2	11	junction_3	212.826126215744	46	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACAACT	NA	False	NA	NA	False	NA	NA	NA	95252669	95223661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95248520_95248973_95250692_95251054_95252479
56300	chr17	+	1733	6	FSM	ENSMUSG00000024072.10	ENSMUST00000024873.7	2133	6	280	120	-163	-120	multi-exon	FALSE	canonical	3	391	junction_2	44.687358391384	176	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCAAATCCCTGTTAGCA	NA	False	NA	NA	False	NA	NA	NA	74796767	74807152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_74796790_74799340_74799501_74800922_74801095_74803584_74803663_74805303_74805418_74805965
56302	chr19	-	1524	10	NNC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	81.0725935942521	731	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTCCTGTGTTTTTCTTC	-6	True	NA	NA	False	NA	NA	NA	6117857	6112855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116267_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
56303	chr11	+	2343	17	ISM	ENSMUSG00000019302.17	ENSMUST00000168757.9	3967	22	4	18892	4	-2	5prime_fragment	FALSE	canonical	3	143	junction_12	25.0571222409917	108	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCTTTCCTGGTCGTGA	NA	False	NA	NA	False	NA	NA	NA	100900316	100935647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341
56304	chr11	+	2257	7	ISM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	48	68	10	-68	intron_retention	FALSE	canonical	3	581	junction_1	38.3434769187958	1	120	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAATTCAGAAAAATTAT	NA	False	NA	NA	False	NA	NA	NA	68936525	68942422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127
56307	chr19	+	781	1	NIC	ENSMUSG00000045098.20	novel	3216	14	NA	NA	1057	-12295	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTTAAAAACCATTTC	NA	False	NA	NA	False	NA	NA	NA	3819603	3820384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_3819600_3820400
56308	chr7	-	1915	1	NIC	ENSMUSG00000057342.16	novel	3548	7	NA	NA	1239	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTAGGCCTTCACCCCT	8960	False	NA	NA	False	NA	NA	NA	45361628	45359713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45359700_45361600
56310	chr11	+	2269	9	FSM	ENSMUSG00000034947.14	ENSMUST00000039581.14	2304	9	32	3	17	-3	multi-exon	FALSE	canonical	3	13	junction_1	4.99843725578305	76	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAAAAGGGGCATTCCT	3720	False	NA	NA	False	NA	NA	NA	101473099	101482611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101473152_101473450_101473531_101474383_101474611_101475271_101475336_101477064_101477219_101479678_101479820_101479923_101479968_101480760_101480815_101481158
56313	chr12	+	2432	1	NIC	ENSMUSG00000037679.10	novel	2795	15	NA	NA	8461	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	35	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTCATGAGTGTGGTAT	NA	False	NA	NA	False	NA	NA	NA	112579551	112581983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_112579600_112582000
56315	chr3	-	2019	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	93	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGAATGTATGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145355736	145352730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
56316	chr2	+	1469	1	ISM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	53540	5	53466	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	38	True	NA	NA	NA	152122298	152123767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_152122300_152123800
56318	chr11	+	2737	3	FSM	ENSMUSG00000045775.16	ENSMUST00000140739.2	2340	3	349	-746	349	-46	multi-exon	FALSE	canonical	1	1	junction_1	0.5	19	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAAAAATTTTTTTGGC	NA	False	NA	NA	False	NA	NA	NA	115355744	115365178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115355884_115360058_115360975_115363496
56319	chr5	-	875	6	NNC	ENSMUSG00000029718.15	novel	1626	9	NA	NA	179	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	230.159596801871	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGATCGTGTCTGAGG	7497	False	NA	NA	False	NA	NA	NA	137606275	137603370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137603580_137603718_137603890_137603984_137604063_137605148_137605370_137605669_137605807_137606216
56320	chr19	-	2562	4	FSM	ENSMUSG00000074733.15	ENSMUST00000205854.2	466	4	0	-2096	0	-44	multi-exon	FALSE	canonical	2	4	junction_1	21.5148527508066	21	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACTGTAAGGCAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61129255	61103465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_61105727_61115444_61115506_61115875_61116003_61129142
56322	chr6	+	3445	1	Antisense	novelGene_ENSMUSG00000000399.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	88	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCCGCCATCTTCTCCCA	1016	False	NA	NA	False	NA	NA	NA	126822619	126826064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_126822600_126826100
56323	chr2	-	1864	2	Antisense	novelGene_ENSMUSG00000052368.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGAGGGGAGTCCCAAT	NA	False	NA	NA	False	NA	NA	NA	168863207	168861221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_168861470_168861591
56324	chr12	-	1227	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	22	241	22	71	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	888	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGTATAACATTAAT	NA	False	NA	NA	False	NA	NA	NA	79219419	79203031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
56325	chr19	+	1610	9	NIC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	-8	-3	intron_retention	FALSE	canonical	3	1028	junction_5	79.7962248480465	103	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGTACTGATCCTGGACCT	955	False	NA	NA	False	NA	NA	NA	8713182	8717978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8717329_8717459_8717517_8717765
56326	chr7	+	1016	8	NNC	ENSMUSG00000053898.13	novel	1267	10	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	248.629631937851	173	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28524735	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28531155_28531293_28531428
56327	chr12	+	1026	1	ISM	ENSMUSG00000021255.18	ENSMUST00000116402.10	4300	7	159480	6	16188	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86567370	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_86567400_86568400
56331	chr2	+	1071	3	ISM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	132	1844	1	548	5prime_fragment	FALSE	canonical	3	480	junction_2	39	40	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGAGTACTTGCAAATC	NA	False	NA	NA	False	NA	NA	NA	30697969	30711201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_30698096_30709640_30709845_30710460
56332	chr15	+	1170	10	NNC	ENSMUSG00000056851.15	novel	1463	15	NA	NA	40	46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	200.627349415112	2	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGTGGGTGTTGTTCCT	6126	False	NA	-97	True	NA	NA	NA	102383090	102407362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102383127_102387050_102387178_102391622_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
56333	chr18	+	3125	19	NNC	ENSMUSG00000041238.17	novel	781	8	NA	NA	3	105	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	51.4816580066252	39	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAGCTTTTGAAATACGG	3707	False	NA	NA	False	NA	NA	NA	11790901	11876040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_11790977_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
56334	chr13	-	1371	6	NNC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	22	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	60.3569382921301	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAACTGATCATTGTTACT	NA	False	NA	NA	False	NA	NA	NA	91955802	91944643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949094_91953983_91954280_91955728
56335	chr5	-	1981	4	ISM	ENSMUSG00000001844.11	ENSMUST00000161915.8	1216	6	903	46	903	-46	intron_retention	FALSE	canonical	3	256	junction_2	13.490737563232	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGGAAGTGCCCTGCCTT	9074	False	NA	NA	False	NA	NA	NA	143311206	143302297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886
56336	chrX	-	2243	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	110	0	110	0	multi-exon	FALSE	canonical	3	186	junction_12	25.3807721267498	649	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGCTTAGGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	7471646	7460047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
56338	chr8	+	1239	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	-18	-40	-18	40	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTGTAAATTAAGTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53964743	53976413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
56339	chrX	-	3111	21	Intergenic	novelGene_4082	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	46	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTCTGCGCTAAGCAC	1814	False	NA	NA	False	NA	NA	NA	150413269	150304185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150304432_150305381_150305570_150330387_150330477_150330810_150330916_150333822_150333987_150335480_150335621_150337126_150337315_150338966_150339126_150348362_150348454_150348952_150349060_150350645_150350738_150353335_150353428_150355361_150355663_150356406_150356511_150380294_150380476_150380895_150380980_150381496_150381636_150382270_150382580_150403857_150403954_150408185_150408295_150413142
56340	chr7	-	1566	16	ISM	ENSMUSG00000030720.17	ENSMUST00000116269.9	2487	17	949	698	11	-8	3prime_fragment	FALSE	canonical	3	45	junction_15	32.0638252379358	1	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAACAGTTTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	126182503	126171269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474
56342	chr7	-	1568	12	NNC	ENSMUSG00000030839.13	novel	2551	12	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	34.3758996877004	293	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATTCCCTGGAGAACCC	NA	False	NA	NA	False	NA	NA	NA	46289210	46092594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275204_46275346_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
56343	chr11	+	1407	7	Antisense	novelGene_ENSMUSG00000018727.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	165	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGATGCTGGCCCCTCTT	NA	False	NA	NA	False	NA	NA	NA	113588996	113600423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_113589492_113590660_113590809_113593238_113593331_113594094_113594192_113597241_113597395_113599628_113599681_113600053
56344	chr17	-	440	1	Intergenic	novelGene_135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGACTAAGATCTGTGT	NA	False	NA	NA	False	NA	NA	NA	33093719	33093279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_33093300_33093700
56345	chr5	+	616	5	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	209	-217	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	9243.33076804568	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTCCGGTCTGGATTT	NA	False	NA	NA	False	NA	NA	NA	115697890	115701569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699400_115701429
56346	chr2	+	2541	2	ISM	ENSMUSG00000017299.14	ENSMUST00000017443.14	1664	13	19595	389	11439	-389	3prime_fragment	FALSE	canonical	3	672	junction_1	0	43	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGGTAGTGAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	164607497	164610138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164609683_164609782
56347	chrX	+	1369	8	Antisense	novelGene_ENSMUSG00000057421.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACACGTGGGGAAAGATTA	NA	False	NA	NA	False	NA	NA	NA	94978925	94993985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_94979253_94980975_94981131_94983918_94984236_94984468_94984555_94990016_94990168_94990475_94990680_94991375_94991461_94993941
56348	chr10	-	3035	3	FSM	ENSMUSG00000075327.11	ENSMUST00000100078.10	3226	3	185	6	185	1	multi-exon	FALSE	canonical	3	64	junction_2	10.5	33	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGGCATGTGATCGTTTT	NA	False	NA	NA	False	NA	NA	NA	4337923	4317080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_4319852_4324569_4324755_4337844
56349	chr11	-	1510	1	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	23131	0	1842	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	5006	False	NA	NA	False	NA	NA	NA	69626332	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69624800_69626300
56350	chr15	-	1395	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	401	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	678.783025024734	1	43	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCCGACCCTGCCAGCGT	NA	False	NA	NA	False	NA	NA	NA	83056392	83037703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83037872_83038492_83038924_83043026_83043127_83044300_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
56351	chr7	-	1323	4	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	664.208969794564	58	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGGTGTGTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	99002321	98994639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995220_98995261_98995419_98998147_98998672_99002259
56352	chr11	-	2510	15	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	-65	2388	combination_of_known_junctions	TRUE	canonical	3	15	junction_14	36.7548414137095	66	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTACCATCAGGGGACCC	2309	False	NA	NA	False	NA	NA	NA	98041294	97979528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040941
56353	chr9	-	3307	8	ISM	ENSMUSG00000013076.18	ENSMUST00000223132.2	3046	14	91	12851	91	-4970	5prime_fragment	FALSE	canonical	2	5	junction_7	3.20076521462973	2	68	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGTGATATGCCACATG	NA	False	NA	NA	False	NA	NA	NA	14556261	14471938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_14473517_14482918_14483009_14483970_14484116_14486446_14486736_14504049_14505008_14507746_14507897_14545197_14545249_14556215
56355	chr13	+	1850	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	-95	0	8	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3559414282533	129	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	98399654	98410426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
56356	chr17	+	888	1	NIC	ENSMUSG00000024182.18	novel	3777	11	NA	NA	4332	-1869	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCCAGACCACAGTCTC	NA	False	NA	NA	False	NA	NA	NA	26411458	26412346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26411500_26412300
56357	chr11	+	2051	11	FSM	ENSMUSG00000006784.15	ENSMUST00000006976.8	2673	11	14	608	-2	-3	multi-exon	FALSE	canonical	0	0	junction_10	10.9890854942529	6	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATCTTGAGTGACACTG	NA	False	NA	NA	False	NA	NA	NA	100436533	100462786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100436735_100440628_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100462265
56358	chr3	-	1311	1	Intergenic	novelGene_3189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCATCTGGCCCTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	135067736	135066425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_135066400_135067700
56359	chr15	-	1612	7	NIC	ENSMUSG00000022617.16	novel	2063	9	NA	NA	-111	0	intron_retention	FALSE	canonical	3	290	junction_3	40.2105569333339	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1875	False	NA	NA	False	NA	NA	NA	89313407	89310562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89312219_89312336_89312433_89312613_89313031_89313251
56360	chr15	+	1164	2	NIC	ENSMUSG00000041841.9	novel	925	3	NA	NA	2	-2	intron_retention	FALSE	canonical	3	15185	junction_1	0	72	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTGTGGTGATCTA	2250	False	NA	NA	False	NA	NA	NA	5146128	5148155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_5147186_5148048
56361	chr8	+	791	6	NNC	ENSMUSG00000008450.9	novel	948	5	NA	NA	-10	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1423.32970179084	14	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTAAATTGTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	106587286	106605967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436_106605598_106605684
56362	chr1	-	1576	10	NNC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	-21	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	278.496758409222	1	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGACCTTTTTAAAATTTA	833	False	NA	NA	False	NA	NA	NA	175453160	175428946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444106_175444206_175446616_175446752_175453016
56363	chr16	-	1126	4	NNC	ENSMUSG00000040681.17	novel	261	5	NA	NA	40	631	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3210.85391895815	2	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAAAGAGTATTTGG	NA	False	NA	NA	False	NA	NA	NA	95928889	95922802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928752
56364	chr17	+	1566	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	71	-164	71	7	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTATTGCCTCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	79359687	79397814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
56365	chr15	-	1018	7	FSM	ENSMUSG00000016637.8	ENSMUST00000016781.8	1013	7	-5	0	-5	0	multi-exon	FALSE	canonical	0	0	junction_3	104.002270274366	712	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	78058312	78043662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
56369	chr19	+	1426	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	76	-58	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	786.61442270022	8	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTCCAATTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	47720196	47723969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47723262
56371	chr15	+	1877	6	ISM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	804	-6	-485	6	3prime_fragment	FALSE	canonical	3	82	junction_5	6.71118469422501	87	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCTCCTTGTCTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	76131778	76134110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
56372	chr10	-	520	2	NNC	ENSMUSG00000069682.7	novel	365	2	NA	NA	32	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGAAAATATTCCAATAAA	NA	False	NA	NA	False	NA	NA	NA	29575344	29574781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_29575043_29575085
56373	chr4	+	1172	3	FSM	ENSMUSG00000086290.10	ENSMUST00000126380.4	1213	3	41	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	32	195	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	132035986	132038335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132036219_132037148_132037215_132037461
56374	chr4	-	2687	16	FSM	ENSMUSG00000028434.13	ENSMUST00000030142.4	3247	16	538	22	538	-22	multi-exon	FALSE	canonical	3	116	junction_1	13.208414826247	52	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTTCATCTTACTGCT	853	False	NA	NA	False	NA	NA	NA	57142899	57061747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_57063280_57064798_57064864_57068304_57068339_57071051_57071083_57073261_57073372_57076290_57076461_57076533_57076604_57076913_57077003_57077163_57077252_57078874_57078996_57084022_57084076_57085995_57086041_57087985_57088065_57088801_57088845_57103423_57103529_57142847
56375	chr4	-	1536	3	FSM	ENSMUSG00000037752.5	ENSMUST00000150104.2	376	3	45	-1205	0	1205	multi-exon	FALSE	canonical	3	5	junction_2	21.5	47	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGTATGTACCACTAAGT	4107	False	NA	NA	False	NA	NA	NA	132459794	132454611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132455882_132458186_132458384_132459725
56376	chr7	-	1709	11	NIC	ENSMUSG00000030839.13	novel	2551	12	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_10	24.9110417285187	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATTCCCTGGAGAACCC	NA	False	NA	NA	False	NA	NA	NA	46289054	46092594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46288698
56377	chr11	-	2941	2	Intergenic	novelGene_2251	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGGAGTCTGGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	33493801	33484770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_33484860_33490949
56378	chrX	+	1578	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	-2	-4	-2	4	multi-exon	FALSE	canonical	3	101	junction_1	0	237	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCAGTGTTTGTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	57956818	57965668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_57956922_57964193
56379	chr5	-	2351	3	ISM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	94614	6	7683	-6	3prime_fragment	FALSE	canonical	3	448	junction_1	10	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTTGTCATTGTGCTGG	NA	False	NA	NA	False	NA	NA	NA	50121734	50117303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_50118857_50118989_50119086_50121032
56380	chr16	+	1224	12	FSM	ENSMUSG00000022663.4	ENSMUST00000023343.4	2057	12	189	644	189	0	multi-exon	FALSE	canonical	3	353	junction_3	33.1011472673263	212	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTTATTTGTTTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	44979336	45008257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_44979535_44982768_44982811_44987342_44987393_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528_45006598_45008022
56381	chr11	+	1301	1	Antisense	novelGene_ENSMUSG00000039450.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTGTGGGGTTTACTGCA	6852	False	NA	NA	False	NA	NA	NA	120615349	120616650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120615300_120616600
56382	chr1	+	1820	1	Antisense	novelGene_ENSMUSG00000022995.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCAAACGAGAGATCACAAC	NA	False	NA	NA	False	NA	NA	NA	181724017	181725837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_181724000_181725800
56385	chr4	+	1300	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	29	-864	0	688	multi-exon	FALSE	canonical	3	270	junction_2	3	1192	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTTAAAAAAAAAAAAAAA	14	True	NA	NA	False	NA	NA	NA	32800281	32802247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_32800336_32800609_32800751_32801142
56386	chr2	-	994	6	FSM	ENSMUSG00000044627.12	ENSMUST00000140406.8	919	6	-75	0	-5	0	multi-exon	FALSE	canonical	2	10	junction_2	1714.39027062102	43	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32178022	32168827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32169144_32170238_32170523_32170720_32170816_32171697_32171823_32177608_32177658_32177897
56387	chr13	+	3894	17	NNC	ENSMUSG00000021756.13	novel	5207	15	NA	NA	-2006	849	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	94.2839585706392	2	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTCATGCAGTCCCAGA	NA	False	NA	NA	False	NA	NA	NA	112607126	112641928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_112607216_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112624242_112624404_112625037_112625193_112627016_112627177_112630122_112630206_112631112_112631324_112631723_112631907_112633818_112633921_112634255_112634403_112635282_112635424_112637646_112637744_112639324_112639407_112640238
56388	chr5	-	1573	11	NNC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	10	165	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.457514715764	24	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAAAGCCACGGGGTCAG	NA	False	NA	NA	False	NA	NA	NA	121731633	121705775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121706013_121710086_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
56389	chr9	+	2698	11	ISM	ENSMUSG00000041064.15	ENSMUST00000131483.3	3309	13	1575	6	1570	-1	3prime_fragment	FALSE	canonical	3	64	junction_5	27.7805687486776	88	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTAACTGTGCCTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	65496077	65503243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
56390	chr5	+	1646	4	NNC	ENSMUSG00000061461.12	novel	1231	4	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	153.686549689801	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3378	False	NA	NA	False	NA	NA	NA	53424450	53435882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_53424701_53425364_53426060_53434484_53434542_53435238
56391	chr2	+	2253	5	ISM	ENSMUSG00000026811.19	ENSMUST00000081879.12	2345	6	762	-2	183	0	3prime_fragment	FALSE	canonical	3	74	junction_1	16.299923312703	61	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTCTGTGTCTTTA	5569	False	NA	NA	False	NA	NA	NA	32499237	32510818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32499329_32502235_32502416_32504792_32505200_32508508_32508617_32509351
56392	chr10	-	2414	13	NNC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	78	0	intron_retention	FALSE	canonical	0	0	junction_11	91.8635763873074	2	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTCTCATGGATTCC	NA	False	NA	NA	False	NA	NA	NA	79390833	79376079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79377034_79378211_79378316_79378430_79378556_79380353_79380449_79380522_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384619_79384744_79385017_79385144_79385370_79385688_79386153_79386241_79390744
56393	chr3	+	2277	6	Antisense	novelGene_ENSMUSG00000027506.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	117	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTGGTGCCGGAAACCAA	NA	False	NA	NA	False	NA	NA	NA	8994500	9068906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_8996235_9000051_9000101_9009670_9009769_9012537_9012687_9018740_9018859_9068777
56394	chr8	+	418	4	NNC	ENSMUSG00000031585.14	novel	471	5	NA	NA	2298	181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	629.885880316603	5	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGAAGATGTTTAAGAAGT	8933	False	NA	NA	False	NA	NA	NA	34225768	34266987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_34225935_34242468_34242561_34245879_34245926_34266873
56395	chr11	-	390	1	Intergenic	novelGene_2404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGATGATATTTAAACTT	NA	False	NA	NA	False	NA	NA	NA	74604342	74603952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_74604000_74604300
56396	chr17	-	864	4	NNC	ENSMUSG00000024048.16	novel	1937	4	NA	NA	-18	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1494.50757404869	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAAAATGCTTAGTTGTT	2276	False	NA	NA	False	NA	NA	NA	71309200	71301296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71301780_71303104_71303203_71303705_71303891_71309102
56397	chr2	-	2071	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	66	834	-23	-497	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCAGGGCAGGGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	26792825	26781280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
56399	chr3	-	1611	5	NNC	ENSMUSG00000028133.18	novel	1484	5	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	41.5962738715861	276	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGACTCTTGTGTCTGAG	NA	False	NA	NA	False	NA	NA	NA	120965344	120949051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_120949707_120949835_120949952_120950049_120950166_120952284_120952905_120965240
56400	chr9	+	1123	7	NNC	ENSMUSG00000032478.15	novel	1074	7	NA	NA	41	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	266.748737370749	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCTCCAGGCTGGCAGTA	NA	False	NA	NA	False	NA	NA	NA	109662301	109672022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109662364_109662593_109662751_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
56401	chr7	-	2073	10	NNC	ENSMUSG00000030605.16	novel	2125	10	NA	NA	-7	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	446.964687753703	1	126	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATTCGTGTTCTCCACT	NA	False	NA	NA	False	NA	NA	NA	78798786	78783538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793033_78793137_78794994_78795127_78795369_78795493_78798642
56402	chr7	+	3096	2	FSM	ENSMUSG00000045598.11	ENSMUST00000106312.4	3342	2	255	-9	22	9	multi-exon	FALSE	canonical	3	192	junction_1	0	141	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGACAACTAAGCTGCTT	8363	False	NA	NA	False	NA	NA	NA	126832487	126837360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126832659_126834435
56403	chr12	+	2109	11	FSM	ENSMUSG00000047022.19	ENSMUST00000123498.8	2117	11	2	6	2	-6	multi-exon	FALSE	canonical	3	41	junction_10	14.6659469520382	176	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATATTGTTGGTATTT	NA	False	NA	NA	False	NA	NA	NA	57277233	57543979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
56404	chr1	+	1447	7	NIC	ENSMUSG00000026096.15	novel	1868	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	47.461387815079	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGCCTTGTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	53352815	53365502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_53353018_53354014_53354259_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
56405	chr12	-	1698	11	NNC	ENSMUSG00000020664.11	novel	2544	14	NA	NA	26	-432	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	264.2891598231	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTAACTTCCAAATTG	NA	False	NA	NA	False	NA	NA	NA	31401387	31381707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390347_31393373_31393443_31394821_31394902_31399595_31399675_31401299
56406	chr13	+	988	1	FSM	ENSMUSG00000021555.16	ENSMUST00000224194.2	1042	1	-683	737	-683	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGATCATGGAGGAACAG	4249	False	NA	NA	False	NA	NA	NA	59774777	59775765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_59774800_59775800
56408	chr9	+	1990	3	ISM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	6841	-536	6841	536	3prime_fragment	FALSE	canonical	3	81	junction_1	1	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGAGTGTTGCTCTGTGCT	3748	False	NA	NA	False	NA	NA	NA	108918401	108922093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108918716_108919908_108920074_108920582
56410	chr14	+	1352	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	-62	5	-62	-5	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	505	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTGCTGAGCCTTTCA	4025	False	NA	NA	False	NA	NA	NA	64097750	64157299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
56411	chr16	-	2658	2	FSM	ENSMUSG00000022704.17	ENSMUST00000143858.2	664	2	-637	-1357	-637	-20	multi-exon	FALSE	canonical	3	145	junction_1	0	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATTTTTAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	43688555	43681789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_43683665_43687772
56412	chr5	+	1949	7	ISM	ENSMUSG00000025857.11	ENSMUST00000026975.11	3450	13	15841	9	-1056	-9	3prime_fragment	FALSE	canonical	3	287	junction_1	23.2145787527292	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTATTTGTGTGGCCAT	990	False	NA	NA	False	NA	NA	NA	139151818	139172256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_139151959_139155928_139156098_139159880_139160029_139163669_139163821_139167171_139167329_139170282_139170475_139171264
56413	chr2	+	2175	11	NIC	ENSMUSG00000026781.18	novel	3725	13	NA	NA	15	-29	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	34.0718358765711	1	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATACTGTTTTTACTAAG	NA	False	NA	NA	False	NA	NA	NA	22959477	23003328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_22959632_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
56414	chr11	-	3132	19	NNC	ENSMUSG00000005237.15	novel	13569	85	NA	NA	-1983	14157	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	3.46098180603834	2	64	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCGTGGGCTTTGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	69437365	69387334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69387483_69388639_69388829_69389337_69389578_69389930_69390088_69391537_69391685_69405501_69405717_69406446_69406630_69406807_69406938_69407300_69407507_69407842_69407931_69408396_69408555_69409101_69409294_69411537_69411777_69411915_69412027_69414999_69415229_69420208_69420380_69423194_69423254_69435202_69435383_69437275
56417	chr9	-	2934	1	NIC	ENSMUSG00000037971.11	novel	2761	6	NA	NA	-273	306	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCTCCTCCGGCTTA	NA	False	NA	NA	False	NA	NA	NA	50682521	50679587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50679600_50682500
56418	chr15	+	3044	3	Antisense	novelGene_ENSMUSG00000022602.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACCGAAACCGCCACCAG	53	False	NA	NA	False	NA	NA	NA	74540941	74544416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_74541841_74542026_74542174_74542418
56420	chr15	-	2140	1	Intergenic	novelGene_3333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCAGACAGAGCGCCTCA	8870	False	NA	NA	False	NA	NA	NA	82240827	82238687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_82238700_82240800
56421	chr7	+	3830	20	NNC	ENSMUSG00000053046.17	novel	1986	19	NA	NA	-25365	-8	intron_retention	FALSE	canonical	1	1	junction_19	2.55466549463402	8	79	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTCCATAAAGACACATGA	1688	False	NA	NA	False	NA	NA	NA	141478122	141557970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141478190_141479168_141479321_141535273_141535369_141536717_141536808_141538130_141538272_141538585_141538703_141539170_141539205_141539446_141539516_141539622_141539770_141541158_141541191_141541487_141541653_141541850_141541949_141542022_141542174_141545976_141546038_141546848_141547057_141547451_141547501_141550625_141550750_141552114_141552296_141552369_141552460_141556211
56423	chr4	+	2548	21	ISM	ENSMUSG00000028700.15	ENSMUST00000106498.8	2719	22	618	0	-295	0	3prime_fragment	TRUE	canonical	3	321	junction_8	36.8109698323747	105	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGTGTATTTTGTAATA	NA	False	NA	NA	False	NA	NA	NA	116008332	116017041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038_116011138_116011288_116011417_116011738_116011810_116012027_116012104_116012259_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
56424	chr9	-	2884	25	NIC	ENSMUSG00000040936.16	novel	4200	35	NA	NA	50	18	combination_of_known_junctions	FALSE	canonical	3	18	junction_8	5.47579902845238	27	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTGACATTTGGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	121106186	120985898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017467_121021699_121021862_121033789_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086488_121087794_121087888_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
56425	chr1	+	2727	15	NNC	ENSMUSG00000036155.14	novel	3216	16	NA	NA	58384	205	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2.37868940076382	1	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCGTAGGCTCCAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	127292882	127411646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_127292962_127294139_127294230_127310657_127310730_127312504_127312667_127315079_127315250_127318480_127318616_127325243_127325378_127339863_127339998_127373978_127374129_127387572_127387720_127396928_127397043_127399237_127399313_127407201_127407364_127410270_127411233_127411505
56426	chr2	+	1545	11	NIC	ENSMUSG00000027523.21	novel	3903	13	NA	NA	0	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	336.976497696798	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	174169549	174188537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_174169735_174176004_174176078_174183442_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
56427	chr19	-	2066	11	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	243	-2	intron_retention	FALSE	canonical	2	5	junction_10	123.941276417503	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTAATCTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	6001969	5990571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6001233_6001658_6001815_6001933
56428	chr19	-	2517	15	FSM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	-6	37	-6	-37	multi-exon	FALSE	canonical	3	141	junction_1	15.9123876785558	76	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCCTTCAAATTTTAATA	169	False	NA	NA	False	NA	NA	NA	15962359	15933174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
56429	chr13	-	1697	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	12	473	12	-473	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	1	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314325	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
56432	chr8	-	369	2	Genic_Genomic	ENSMUSG00000059775.6	novel	449	1	NA	NA	-6	-8	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAACTTT	NA	False	NA	NA	False	NA	NA	NA	108166217	108165770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_108165791_108165868
56433	chr11	-	3437	15	FSM	ENSMUSG00000047804.16	ENSMUST00000102650.10	3874	15	35	402	9	-37	multi-exon	FALSE	canonical	3	123	junction_4	17.9790127081323	2	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTTAAATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	61821043	61762534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61763848_61768132_61768229_61768799_61768853_61777525_61777609_61781063_61781174_61784205_61784380_61787473_61787619_61791135_61791273_61794732_61794857_61795600_61795686_61800673_61800773_61805849_61806408_61806909_61807093_61813607_61813656_61820814
56434	chr18	-	938	1	Genic_Genomic	ENSMUSG00000024579.8	novel	NA	NA	NA	NA	9840	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGACTTATTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	61830844	61829906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_61829900_61830800
56435	chr11	-	3525	11	NNC	ENSMUSG00000086929.2	novel	562	3	NA	NA	-8379	-2526	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	32	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCAACGCCCGGTTCAAA	NA	False	NA	NA	False	NA	NA	NA	120391599	120382757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120382901_120385300_120385420_120385782_120385899_120385980_120386029_120386263_120386312_120387246_120387291_120387459_120387530_120387833_120387933_120388209_120388285_120388742_120388799_120388892
56436	chr15	+	2087	9	NIC	ENSMUSG00000023272.5	novel	1366	10	NA	NA	0	-11	intron_retention	FALSE	canonical	3	902	junction_1	104.314128956724	2	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACCAGGAACAGGACGTG	NA	False	NA	NA	False	NA	NA	NA	88703848	88710875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
56437	chr4	+	1913	15	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-20	99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	427.501617135025	1	92	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTGGCTAAAGTAATAAACA	NA	False	NA	NA	False	NA	NA	NA	155954051	155973289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969658_155970007_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972504_155972571_155972650_155972784_155972856_155972983_155973076
56438	chr3	-	1755	5	ISM	ENSMUSG00000037033.10	ENSMUST00000159989.2	3361	14	21218	61	21218	-61	3prime_fragment	FALSE	canonical	3	22	junction_4	3.53553390593274	49	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCAATACTGTAAATTT	NA	False	NA	NA	False	NA	NA	NA	144533900	144528444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_144529296_144530971_144531209_144531662_144531831_144533058_144533330_144533672
56439	chr8	-	1758	13	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-2	-27	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	61.8575312041037	1	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAATAGGAATTAAAGACT	NA	False	NA	NA	False	NA	NA	NA	106578629	106571335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576182_106576257_106576346_106576464_106576556_106578502
56440	chr19	+	2129	6	NIC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	-693	-3	intron_retention	FALSE	canonical	3	1028	junction_2	91.7487874579277	2	114	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGTACTGATCCTGGACCT	1955	False	NA	NA	False	NA	NA	NA	8714182	8717978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8715094_8715211_8715359_8715516_8715619_8716629_8717329_8717459_8717517_8717765
56441	chr15	+	1443	9	NNC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	22	-906	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	565.01587367082	7	39	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTTGGCTATGACACTT	654	False	NA	NA	False	NA	NA	NA	78915095	78921647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78915321_78918130_78918262_78919159_78919262_78919453_78919604_78919976_78920132_78920219_78920303_78920466_78920625_78920940_78921075_78921342
56442	chr19	-	2532	12	ISM	ENSMUSG00000037578.5	ENSMUST00000042026.5	3321	15	35281	0	35281	0	3prime_fragment	FALSE	canonical	3	31	junction_9	12.7694107632134	93	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTTGCATTTCCTTCTG	840	False	NA	NA	False	NA	NA	NA	44145600	44136075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_44136988_44137591_44137716_44137967_44138087_44138850_44138969_44140471_44140594_44140802_44140902_44142097_44142219_44142502_44142685_44142862_44143034_44143886_44144116_44144279_44144505_44145490
56443	chr9	-	945	5	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	3	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1066.52109683775	11	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGCAGCATGGTGG	NA	False	NA	NA	False	NA	NA	NA	21671595	21666729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21667014_21667361_21667592_21668585_21668691_21668980_21669126_21671414
56444	chr9	-	2380	2	FSM	ENSMUSG00000046846.5	ENSMUST00000056949.5	3042	2	3	659	3	-659	multi-exon	FALSE	canonical	3	9	junction_1	0	48	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAAGCTGGCAGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	62189487	62178669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_62180846_62189283
56446	chr14	-	1310	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-9	-1142	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1815.13332413214	1	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAGATGTCTTCCAAATA	NA	False	NA	NA	False	NA	NA	NA	36857220	36843922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852722_36853496_36853607_36855127_36855228_36855589_36855761_36857151
56447	chr1	+	1402	13	NNC	ENSMUSG00000026427.17	novel	2153	15	NA	NA	62	-5088	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	189.70503419783	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACAGGGACCAGGAGTCC	NA	False	NA	NA	False	NA	NA	NA	131080979	131094159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082023_131082096_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063
56448	chr11	-	2713	15	NNC	ENSMUSG00000005237.15	novel	696	5	NA	NA	-2019	-18681	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2.93900580163443	32	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCGCTCAGCTATATCAAG	NA	False	NA	NA	False	NA	NA	NA	69437401	69330315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69330324_69405083_69405717_69406446_69406630_69406807_69406938_69407300_69407507_69407842_69407931_69408396_69408555_69409101_69409294_69411537_69411777_69411915_69412027_69414999_69415229_69420208_69420380_69423194_69423254_69435202_69435383_69437275
56449	chr14	+	1497	7	NNC	ENSMUSG00000021868.8	novel	1549	6	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.805846340744	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	385	False	NA	NA	False	NA	NA	NA	25694586	25700892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25694700_25694758_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
56450	chr17	+	1163	4	NNC	ENSMUSG00000046711.17	novel	917	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	884.141140065067	2	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTCTCTGGTGTAAGGA	NA	False	NA	NA	False	NA	NA	NA	27775625	27782641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778645_27779901_27779971_27781783
56451	chr15	-	2460	15	NNC	ENSMUSG00000054277.9	novel	2619	16	NA	NA	7	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	20.096197223782	1	102	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGAATTTGATGAACCAAA	3532	False	NA	NA	False	NA	NA	NA	83234441	83184040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194586_83197669_83197814_83198540_83198670_83206774_83206924_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220911_83227218_83227342_83234281
56452	chr15	-	2967	7	FSM	ENSMUSG00000062373.9	ENSMUST00000072113.6	3747	7	651	129	651	-129	multi-exon	FALSE	canonical	3	142	junction_6	14.2087609906314	68	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTTTAAGACGTTTGG	NA	False	NA	NA	False	NA	NA	NA	58694728	58654246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_58656860_58658958_58659065_58661234_58661278_58662003_58662059_58666190_58666259_58669049_58669095_58694691
56453	chr2	+	1508	10	FSM	ENSMUSG00000027593.16	ENSMUST00000029120.14	1802	10	294	0	58	0	multi-exon	FALSE	canonical	3	28	junction_4	48.6369772452561	179	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	NA	False	NA	NA	NA	154633346	154709164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
56454	chr5	-	2479	10	NNC	ENSMUSG00000062110.15	novel	3672	9	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	29.2840495074632	2	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCAAGCTGTCGCTAGC	NA	False	NA	NA	False	NA	NA	NA	74692376	74366749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74494133_74494245_74558314_74558565_74623220_74623397_74642807_74642939_74680144_74680314_74691442
56461	chr14	+	2068	6	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-14067	13	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	4.02988833592198	41	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGGTAGAAAACACAGAC	NA	False	NA	NA	False	NA	NA	NA	40986694	41010785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40986778_40986925_40987404_40998230_40998303_41001646_41001810_41002809_41002942_41009645
56464	chr6	-	924	9	NNC	ENSMUSG00000000399.11	novel	1445	11	NA	NA	0	-5544	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	414.023380227494	2	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTACGGTGCTGTTCGT	NA	False	NA	NA	False	NA	NA	NA	126826099	126804502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_126804599_126809434_126809512_126811387_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
56466	chr1	+	1201	9	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-5	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	846.753616762279	6	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724124	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737612_59740043_59740109_59748193_59748296_59749653_59749812_59750429
56467	chr5	+	1294	9	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-1983	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	617.073929424182	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145058505	145064866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145058550_145059341_145059447_145060378_145060602_145061396_145061494_145062378_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
56468	chrX	-	1598	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114473.8	1492	12	-118	12	-14	-11	multi-exon	FALSE	canonical	3	9	junction_11	19.8644164606543	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACAGAACCATGCTCTGG	NA	False	NA	NA	False	NA	NA	NA	72703448	72699611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703272
56469	chr3	+	1763	14	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-19	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	589.571231223497	1	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCGTGCTGGATTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32762894	32781119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766420_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772620_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779487_32780670
56470	chr11	+	2149	6	NNC	ENSMUSG00000045671.18	novel	2852	6	NA	NA	43580	311	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	27.3452006758042	2	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGTAGAGATCAAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	19948149	19972888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_19948298_19955781_19955951_19958412_19958478_19968051_19968190_19970790_19972069_19972537
56471	chr2	+	3821	2	Antisense	novelGene_ENSMUSG00000007659.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTCAGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152668298	152672402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_152672023_152672305
56472	chr12	+	1463	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	10	118	10	-118	multi-exon	FALSE	canonical	3	1446	junction_1	298.758363899657	3	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCCATCTGTTGTTG	3983	False	NA	NA	False	NA	NA	NA	100076422	100089546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
56473	chrX	-	3838	2	ISM	ENSMUSG00000025272.17	ENSMUST00000087253.11	3224	14	8057	25	2329	-25	3prime_fragment	FALSE	canonical	3	31	junction_1	0	16	66	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTACATTAAATTTGCCAA	NA	False	NA	NA	False	NA	NA	NA	149432338	149428328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_149428518_149428689
56474	chr6	+	1968	6	NNC	ENSMUSG00000042097.18	novel	915	6	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	11.2853887837327	34	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTCCAATGTGTTCATTTG	NA	False	NA	NA	False	NA	NA	NA	117840047	117849727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117840104_117843355_117843536_117846178_117846235_117846362_117846438_117847216_117848094_117849003
56475	chr8	-	1578	9	NIC	ENSMUSG00000031816.16	novel	1060	10	NA	NA	0	-7	intron_retention	FALSE	canonical	3	11	junction_6	23.6167313572391	134	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTAAGCTGCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	121835082	121824302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831298_121832312_121832427_121833608_121833713_121835026
56477	chr13	+	1110	4	Fusion	ENSMUSG00000113350.3_ENSMUSG00000113723.3	novel	902	4	NA	NA	90	-174	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	54	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATGCTTATATATATAAC	NA	False	NA	NA	False	NA	NA	NA	66091939	66341932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66092288_66144930_66145005_66145094_66145372_66341521
56478	chr14	-	2793	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	134	6	87	-2	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	141	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAAGGCCCTGTGTGTGT	4828	False	NA	NA	False	NA	NA	NA	52258056	52243544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
56479	chr15	+	1905	11	FSM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	34	-1	34	1	multi-exon	FALSE	canonical	1	3	junction_1	59.5990771740637	579	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCTTCATCAATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	102353835	102363066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102353958_102354239_102354423_102354698_102354891_102355142_102355215_102355434_102355548_102355665_102355897_102360583_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
56480	chr14	+	921	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	284.258245263	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	NA	False	NA	NA	NA	8508550	8520749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_8508579_8512131_8512210_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
56481	chr6	-	1765	3	FSM	ENSMUSG00000030322.13	ENSMUST00000122816.3	2415	3	-70	720	7	-720	multi-exon	FALSE	canonical	0	0	junction_2	53	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACAGCAGCTAAGAGGTG	7894	False	NA	NA	False	NA	NA	NA	115830319	115825372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115826694_115827578_115827801_115830097
56483	chr13	-	1469	12	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	129	-190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	291.068081553395	1	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAACCATTTGCAGATTGC	NA	False	NA	NA	False	NA	NA	NA	104953332	104767837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104768247_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941430_104941525_104943144_104943209_104944211_104944341_104947724_104947822_104953194
56484	chr1	+	647	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	74	42	74	-42	multi-exon	FALSE	canonical	3	979	junction_1	90.5	4913	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTTGTAACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	58625616	58635081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58625830_58630248_58630409_58634807
56485	chr7	+	1982	10	NNC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	20	546	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	100.720858604485	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGCATAGCCTCTGGCT	6845	False	NA	NA	False	NA	NA	NA	140711233	140736061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140711431_140715221_140715324_140731560_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
56486	chr17	-	935	5	ISM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	86	-1	7	0	intron_retention	FALSE	canonical	3	797	junction_3	67.913547985656	2304	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9364	False	NA	NA	False	NA	NA	NA	27158431	27156945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857
56489	chr10	-	1231	1	NIC	ENSMUSG00000034932.5	novel	604	3	NA	NA	20	-244	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGACTCCGAGTACCCCAC	3124	False	NA	NA	False	NA	NA	NA	81102738	81101507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81101500_81102700
56490	chr10	-	837	1	NIC	ENSMUSG00000034932.5	novel	604	3	NA	NA	1364	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCACGCACATGTGTGT	4468	False	NA	NA	False	NA	NA	NA	81101394	81100557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81100600_81101400
56491	chr1	-	1127	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	6	0	6	0	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	68	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	False	NA	NA	False	NA	NA	NA	152262427	152246485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
56492	chr4	+	659	1	NIC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	20961	-136	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTTTTCTCATGCT	465	False	NA	NA	False	NA	NA	NA	46471862	46472521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_46471900_46472500
56493	chr2	+	1569	12	ISM	ENSMUSG00000027523.21	ENSMUST00000109096.9	2465	13	991	0	-47	0	3prime_fragment	FALSE	canonical	3	9	junction_1	249.01252914145	31	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	6249	False	NA	NA	False	NA	NA	NA	174127103	174188537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_174127271_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
56495	chr11	-	1998	8	FSM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	36	3	0	-3	multi-exon	FALSE	canonical	0	0	junction_1	263.494104027287	1110	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCTGTGATCCGTACG	NA	False	NA	NA	False	NA	NA	NA	50101618	50090981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
56500	chr7	+	1182	10	NNC	ENSMUSG00000003423.16	novel	1185	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.872854328754	817	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAGCTCCAGACAATGA	NA	False	NA	NA	False	NA	NA	NA	44803737	44809483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44803965_44805727_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
56502	chr13	+	1915	4	FSM	ENSMUSG00000071252.7	ENSMUST00000225605.2	1539	4	-15	-361	-1	361	multi-exon	FALSE	canonical	3	23	junction_3	17.5562587763516	97	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAATTAATGTGACAGATG	NA	False	NA	NA	False	NA	NA	NA	77283657	77342194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672
56504	chr7	+	1286	1	Genic_Genomic	ENSMUSG00000063903.6	novel	NA	NA	NA	NA	-10	-2535	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGTGCAGAACACCCCA	NA	False	NA	NA	False	NA	NA	NA	43874773	43876059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_43874800_43876100
56505	chr17	+	2235	2	NNC	ENSMUSG00000118651.2	novel	2504	2	NA	NA	-20976	-2965	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	83	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCGCGCGGCTGCCGGACG	NA	False	NA	NA	False	NA	NA	NA	79641151	79662486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79643149_79662248
56506	chr14	-	2120	6	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	52478	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	247.863349448845	3	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	14532554	14518184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14532451
56507	chr17	-	1512	4	NNC	ENSMUSG00000039615.10	novel	1498	5	NA	NA	0	-21	intron_retention	FALSE	canonical	3	73	junction_2	707.455691584678	1	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTAATAAAGTCTGTGAG	6787	False	NA	NA	False	NA	NA	NA	26051893	26049634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26050606_26050769_26050884_26051019_26051219_26051665
56508	chr7	+	2156	10	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	-73	-25	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	19.956124713487	6	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAAAACAAAGTTTAA	944	False	NA	NA	False	NA	NA	NA	51512101	51644176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_51512193_51513745_51513842_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
56509	chr1	-	687	1	ISM	ENSMUSG00000078185.4	ENSMUST00000104984.4	6905	2	9700	7	5423	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGAAATGGTGTGCTCAAT	NA	False	NA	NA	False	NA	NA	NA	175510496	175509809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_175509800_175510500
56510	chr14	+	1477	3	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-15	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1127.5	1	72	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATACACACGTGTTTCTA	6576	False	NA	NA	False	NA	NA	NA	76741954	76745197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742723_76744081
56512	chr8	-	1619	1	Antisense	novelGene_ENSMUSG00000031577.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTCAAGTGCCGGACAG	NA	False	NA	NA	False	NA	NA	NA	31647458	31645839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_31645800_31647500
56513	chr8	-	1081	11	NNC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1612.89559798519	2	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCTTACCCAACTGACT	NA	False	NA	NA	False	NA	NA	NA	84321111	84298340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299275_84299469_84299576_84299782_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
56515	chr17	+	970	5	NIC	ENSMUSG00000002660.9	novel	983	6	NA	NA	12	-6	intron_retention	FALSE	canonical	3	1307	junction_3	115.24403455277	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCATGTCTGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	57297403	57303182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57297678_57298293_57298391_57299825_57300014_57300447_57300554_57302877
56516	chr11	-	1567	3	NNC	ENSMUSG00000005198.16	novel	5799	28	NA	NA	-227	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.5	1	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAAGTCTGTATGTGT	NA	False	NA	NA	False	NA	NA	NA	69633624	69624830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69626172_69633269_69633384_69633512
56517	chr2	+	1316	1	NIC	ENSMUSG00000027245.12	novel	4170	5	NA	NA	-3	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	55	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCTCTTATATTGTGT	NA	False	NA	NA	False	NA	NA	NA	121287601	121288917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_121287600_121288900
56518	chr4	+	922	7	Antisense	novelGene_ENSMUSG00002075153.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAGCGCTCCACTCCGCGC	NA	False	NA	NA	False	NA	NA	NA	129171020	129229094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129171032_129203397_129203672_129216179_129216260_129216484_129216665_129222382_129222526_129228287_129228438_129229010
56521	chr12	+	1865	8	FSM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	12	6	-5	-6	multi-exon	TRUE	canonical	3	24	junction_1	6.51841974088562	128	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTGCTTTCTTTGATTTA	NA	False	NA	NA	False	NA	NA	NA	102521239	102531281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_102521430_102522143_102522191_102524724_102524819_102525547_102525617_102527603_102527763_102527925_102528343_102528856_102529333_102530868
56522	chr1	+	1573	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	7	-67	7	67	multi-exon	FALSE	canonical	3	49	junction_1	0	251	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTACTTATTGAAATAATAA	NA	False	NA	NA	False	NA	NA	NA	163822464	163824879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_163822641_163823482
56524	chr2	-	1156	13	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-13	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	309.246429513207	13	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCCTACTGTGATGGTT	NA	False	NA	NA	False	NA	NA	NA	5849765	5799473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809798_5812286_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
56525	chr15	-	4166	1	FSM	ENSMUSG00000055745.5	ENSMUST00000069476.5	4426	1	260	0	260	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCGTATCTGCTATA	5287	False	NA	NA	False	NA	NA	NA	84441764	84437598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_84437600_84441800
56526	chr8	-	767	2	Genic_Genomic	ENSMUSG00000063696.8	novel	954	1	NA	NA	-73	52	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTTACTTCTCTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592503	103591424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_103591661_103591972
56528	chr10	-	983	4	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-4	-178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	859.828277429084	35	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358259	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127353976_127356786_127356985_127358156
56529	chr8	+	3060	11	NNC	ENSMUSG00000008206.17	novel	9475	11	NA	NA	0	398	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	17.0833252032501	2	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTTTTCTTTTATGC	NA	False	NA	NA	False	NA	NA	NA	4543457	4575520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571285_4573353_4573511_4573603
56532	chr15	+	1658	4	ISM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	0	667	0	82	intron_retention	FALSE	canonical	3	46	junction_1	5.79271573232759	154	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGCAGTTTGGATCTT	9243	False	NA	NA	False	NA	NA	NA	76585664	76587772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273
56533	chr11	+	1651	4	ISM	ENSMUSG00000020903.14	ENSMUST00000021286.11	1638	5	20	1618	-1	-1618	5prime_fragment	FALSE	canonical	3	260	junction_1	24.9131825880731	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAGGAGAAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	67857314	67876815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388
56534	chr11	-	1455	3	ISM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	138285	1	11312	-1	3prime_fragment	FALSE	canonical	3	308	junction_1	4	213	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTCTTGTCATTTGTCC	NA	False	NA	NA	False	NA	NA	NA	35733069	35729227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_35730072_35731136_35731259_35732580
56535	chr9	-	1221	8	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	7	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	503.545916273698	50	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTAAGGTATCCTGTGTA	NA	False	NA	NA	False	NA	NA	NA	70328822	70314976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_70315183_70317462_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
56537	chr1	-	1510	7	Antisense	novelGene_ENSMUSG00000034432.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	49	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGATGAGGTAAAGGAGCTG	NA	False	NA	NA	False	NA	NA	NA	90540841	90531199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_90531344_90532090_90532168_90533185_90533235_90534258_90534390_90537809_90537921_90538694_90538760_90539908
56538	chr8	+	1479	13	NNC	ENSMUSG00000031629.15	novel	2931	13	NA	NA	-1	256	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	87.9150473784525	73	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGCATAGAATGATCCT	NA	False	NA	NA	False	NA	NA	NA	47005094	47031669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023052_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
56539	chr11	-	1837	6	ISM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	4011	3	-586	-3	3prime_fragment	FALSE	canonical	1	16	junction_4	22.547727158186	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTCTGTGTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	120265579	120260390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707
56540	chr5	+	3183	17	FSM	ENSMUSG00000005373.14	ENSMUST00000005507.10	3622	17	-16	455	0	5	multi-exon	FALSE	canonical	2	15	junction_13	3.60067268020852	33	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTGGTGTTGGTGTGACT	3418	False	NA	NA	False	NA	NA	NA	135135755	135166781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161962_135162031_135162105_135162263_135162397_135162514_135162607_135162728_135162847_135162976_135163340_135163465_135164204_135164335_135166095
56541	chr4	+	990	8	NNC	ENSMUSG00000009863.15	novel	1142	8	NA	NA	-12	-13	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	1108.34322025154	757	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTAAGATAAATAGGCGT	NA	False	NA	NA	False	NA	NA	NA	140688699	140706491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701139_140703425_140703528_140704688_140704812_140706335
56542	chr12	+	2056	2	Antisense	novelGene_ENSMUSG00000049792.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	197	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGCCGCGCGTCGGCTCGG	NA	False	NA	NA	False	NA	NA	NA	111675921	111679643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_111677847_111679512
56543	chr2	+	1061	1	Intergenic	novelGene_2576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAAAATTTTTCAGTAAC	644	False	NA	NA	False	NA	NA	NA	20655798	20656859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_20655800_20656900
56545	chr17	-	1353	12	FSM	ENSMUSG00000024426.18	ENSMUST00000077494.13	1340	12	1	-14	0	0	multi-exon	TRUE	canonical	3	28	junction_5	34.4359508470988	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	False	NA	NA	False	NA	NA	NA	36220937	36208486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
56546	chr19	+	1450	2	ISM	ENSMUSG00000036372.15	ENSMUST00000127878.2	1026	3	-8	0	-8	0	intron_retention	FALSE	canonical	3	2797	junction_1	0	93	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4173	False	NA	NA	False	NA	NA	NA	10181573	10185182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10181629_10183787
56547	chr8	+	969	9	NIC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	436.980477252703	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	714	False	NA	NA	False	NA	NA	NA	70755429	70765640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70765355_70765431_70765508
56548	chr2	-	1273	1	Intergenic	novelGene_2575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCCTCCCCCATCGTCA	NA	False	NA	NA	False	NA	NA	NA	20634431	20633158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_20633200_20634400
56549	chr11	+	1795	9	NNC	ENSMUSG00000020783.15	novel	12106	13	NA	NA	15809	-13027	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	101.662354758288	3	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTTCAGTATTTTTTG	7914	False	NA	NA	False	NA	NA	NA	72954507	72967116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72954687_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440
56550	chr7	+	1942	13	NNC	ENSMUSG00000035704.18	novel	2039	13	NA	NA	20	-31	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	39.38555854907	270	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATAGCAAAGTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	97020832	97041361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040141_97040169_97040734
56552	chr10	+	1036	8	NNC	ENSMUSG00000035754.9	novel	3911	10	NA	NA	0	23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	777.888534064214	19	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGCTGTGATCTAGTGTT	2286	False	NA	NA	False	NA	NA	NA	79795985	79803468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801962_79802039_79802105_79802178_79802306_79803380
56554	chr3	-	1822	1	Antisense	novelGene_ENSMUSG00000028060.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAGCATATTACATATC	NA	False	NA	NA	False	NA	NA	NA	88609675	88607853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88607900_88609700
56555	chr5	+	2852	1	NIC	ENSMUSG00000029176.14	novel	3854	28	NA	NA	-17	-11659	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAGAAAAAAAATAAATTAC	NA	False	NA	NA	False	NA	NA	NA	52991450	52994302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_52991400_52994300
56556	chr10	+	992	10	NIC	ENSMUSG00000078427.4	novel	918	11	NA	NA	-131	0	combination_of_known_splicesites	FALSE	canonical	3	355	junction_8	1412.89957529774	114	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	128657631	128713498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128708289_128708380_128713201
56557	chr4	+	1309	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	15	641	15	-641	multi-exon	FALSE	canonical	3	51	junction_6	14.9080515158756	334	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTGTCTGTGATTATTG	-10	True	NA	NA	False	NA	NA	NA	20042066	20066109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
56561	chr19	+	2101	2	NIC	ENSMUSG00000064032.3	novel	3332	2	NA	NA	10	1505	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	1	120	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCGTTCCCAGCTTCGCC	NA	False	NA	NA	False	NA	NA	NA	10176562	10181253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10178462_10181051
56563	chr17	-	2057	7	Antisense	novelGene_ENSMUSG00000098374.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGAGCTCCGGCCGCCT	NA	False	NA	NA	False	NA	NA	NA	29855554	29833896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29834052_29840480_29840610_29845477_29846221_29847930_29847997_29850642_29850733_29853632_29853737_29854784
56564	chr12	-	955	5	FSM	ENSMUSG00000021124.14	ENSMUST00000162789.9	1059	5	16	88	16	71	multi-exon	FALSE	canonical	3	23	junction_4	311.173183291877	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGTATAACATTAAT	NA	False	NA	NA	False	NA	NA	NA	79219206	79203031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79218993
56565	chr11	-	2151	17	ISM	ENSMUSG00000020546.15	ENSMUST00000143203.8	5985	18	14	17707	3	-2090	5prime_fragment	FALSE	canonical	2	8	junction_14	2.30488611432322	16	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCGTTCTATAAACAAAGT	NA	False	NA	NA	False	NA	NA	NA	90528896	90385024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_90385486_90426305_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
56568	chr8	-	2110	3	NNC	ENSMUSG00000031508.15	novel	2625	4	NA	NA	4917	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	274	1	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATCTGTCTCTGAAACTG	9032	False	NA	NA	False	NA	NA	NA	11669709	11661584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_11662948_11665811_11665911_11669061
56569	chr11	-	2123	11	NNC	ENSMUSG00000005198.16	novel	6740	29	NA	NA	1547	-537	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	119.246802892153	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCACCCAGTTATTCCCC	NA	False	NA	NA	False	NA	NA	NA	69631850	69625772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69626393_69626475_69626626_69626765_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824
56570	chr9	+	3090	20	NNC	ENSMUSG00000032212.11	novel	1786	4	NA	NA	-318	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	88.6984683213215	6	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCTAATGTATTGAGAAC	NA	False	NA	NA	False	NA	NA	NA	70449717	70499516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_70449796_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
56571	chr8	-	882	1	Antisense	novelGene_ENSMUSG00000003037.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACCTCTCTCCATCTGT	NA	False	NA	NA	False	NA	NA	NA	72935116	72934234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_72934200_72935100
56572	chr7	+	1888	13	FSM	ENSMUSG00000015165.17	ENSMUST00000172529.8	1898	13	0	10	0	-1	multi-exon	FALSE	canonical	3	71	junction_1	1654.75498983653	464	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATAAAACTATTTGCTG	NA	False	NA	NA	False	NA	NA	NA	28508232	28521664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28508285_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
56574	chr9	-	975	3	ISM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	12293	3	1316	-2	3prime_fragment	FALSE	canonical	3	370	junction_1	117.5	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATCTGGTGGTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	66938791	66929876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_66930724_66938310_66938381_66938733
56575	chr13	-	1193	2	NNC	ENSMUSG00000058672.8	novel	1610	4	NA	NA	2487	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATCTATGGTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	34259503	34258266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34259186_34259229
56576	chr1	-	2984	5	FSM	ENSMUSG00000043467.20	ENSMUST00000159250.9	2473	5	35	-546	3	546	multi-exon	FALSE	canonical	2	3	junction_4	2.06155281280883	18	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGCTGGTGACTCCAA	NA	False	NA	NA	False	NA	NA	NA	160862383	160846282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160847977_160857211_160857312_160859374_160860332_160861657_160861855_160862347
56577	chr7	-	1787	11	NNC	ENSMUSG00000002980.15	novel	2429	15	NA	NA	-5	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	188.511034159807	2	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGACACTTTCCTACCGC	3959	False	NA	NA	False	NA	NA	NA	19504425	19490068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498113_19500845_19500987_19502376_19502499_19504331
56578	chr3	-	1001	9	NIC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1829	junction_5	131.829198207377	4733	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTCTAGTCCTTACGTT	NA	False	NA	NA	False	NA	NA	NA	54641758	54636101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716
56579	chr8	+	1914	7	Antisense	novelGene_ENSMUSG00000031696.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	109	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGTATCTTCAAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	85987031	86001599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85987940_85988608_85988765_85989939_85990183_85990775_85990952_85997320_85997445_86000100_86000254_86001445
56580	chr9	-	1957	6	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-30	1376	-30	-1376	5prime_fragment	FALSE	canonical	3	46	junction_1	21.0770016843004	15	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTCTGCATCATGAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	53448003	53434522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
56582	chr3	-	2392	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117784.8	2387	11	-7	2	-1	-2	multi-exon	FALSE	canonical	3	27	junction_7	7.33212111192934	31	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTCAAGACTGTCTCCCT	3399	False	NA	NA	False	NA	NA	NA	108117785	108109545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108117660
56583	chr18	+	649	1	Antisense	novelGene_ENSMUSG00000097666.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTGTCTCCGGATGTCC	2836	False	NA	NA	False	NA	NA	NA	77817195	77817844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_77817200_77817800
56584	chr12	-	1410	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.691777320082	80	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105189055	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
56585	chr16	-	3366	2	FSM	ENSMUSG00000039763.11	ENSMUST00000049244.10	3368	2	-1	3	-1	0	multi-exon	FALSE	canonical	2	4	junction_1	0	16	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTCTGTGGTCCATTGA	9248	False	NA	NA	False	NA	NA	NA	91415888	91411144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91414268_91415645
56586	chr18	-	4218	1	FSM	ENSMUSG00000065904.3	ENSMUST00000083970.3	70	1	-1821	-2327	-1821	2327	mono-exon	FALSE	NA	NA	NA	NA	NA	2	99	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTGGAATTCCCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	35077587	35073369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35073400_35077600
56587	chr9	+	1430	13	NNC	ENSMUSG00000003402.15	novel	2228	18	NA	NA	240	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	409.86897466006	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTGTTTTTTAATTTC	NA	False	NA	NA	False	NA	NA	NA	21914752	21925521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914834_21914972_21915061_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919662_21921448_21921512_21923322_21923400_21923517_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
56588	chr11	-	2161	12	NNC	ENSMUSG00000009073.17	novel	4720	16	NA	NA	-47	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	106.322058695688	151	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATAGTCTTTCGTCGAGT	8969	False	NA	NA	False	NA	NA	NA	4799412	4715853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4716524_4741148_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
56589	chr4	-	1600	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	23	0	23	0	multi-exon	FALSE	canonical	3	984	junction_1	0	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127222931	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127220565_127222868
56590	chr6	+	1642	11	NNC	ENSMUSG00000069678.11	novel	918	9	NA	NA	-5455	-9	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	71.2011938102164	51	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCTTTTAAAAAGCACTT	869	False	NA	NA	False	NA	NA	NA	83049394	83057819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83049526_83054554_83055220_83055381_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
56592	chr5	-	1417	9	Antisense	novelGene_ENSMUSG00000067367.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	114	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCACCCAGCGTAGCACC	NA	False	NA	NA	False	NA	NA	NA	38391643	38377924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_38377975_38380472_38380576_38381970_38382139_38383229_38383346_38385196_38385285_38387926_38388333_38388614_38388710_38390589_38390669_38391331
56593	chr6	+	3347	1	Antisense	novelGene_ENSMUSG00000030243.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACGTGAACCAGGTCC	NA	False	NA	NA	False	NA	NA	NA	142329185	142332532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_142329200_142332500
56594	chr17	-	2903	3	ISM	ENSMUSG00000052105.18	ENSMUST00000145347.8	5463	12	39357	4	-8	-4	3prime_fragment	FALSE	canonical	3	153	junction_1	6	87	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCAACAGGGTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	66653548	66643986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_66645150_66649820_66651361_66653348
56595	chr8	-	2467	13	NIC	ENSMUSG00000005465.10	novel	2664	14	NA	NA	-5	-24	combination_of_known_splicesites	FALSE	canonical	3	6	junction_11	7.87885708011567	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATAAATAAATCTTTTTT	5274	False	NA	83	True	NA	NA	NA	84769203	84756946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84757822_84757941_84758051_84758147_84758239_84758645_84758772_84760579_84760739_84760820_84760923_84762713_84762903_84762991_84763176_84765924_84765999_84766106_84766264_84767302_84767461_84768715_84768834_84769078
56596	chrX	+	2628	5	Intergenic	novelGene_4057	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.11803398874989	3	54	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCCTTACCCCATAAAAAC	NA	False	NA	NA	False	NA	NA	NA	134838736	134873151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_134838808_134839103_134839312_134866555_134866916_134868675_134868841_134871327
56597	chr11	-	1088	5	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9293.80711818359	2	55	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9930	False	NA	NA	False	NA	NA	NA	69812223	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808462_69810044_69810163_69811988
56598	chr8	-	1673	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	13	3	7	-3	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	206	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGGTGGTGCACGCCTTT	518	False	NA	NA	False	NA	NA	NA	105991228	105984920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
56599	chr11	-	2687	17	FSM	ENSMUSG00000010122.15	ENSMUST00000010267.10	2639	17	-53	5	-53	-4	multi-exon	FALSE	canonical	2	6	junction_16	9.25675429078681	94	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTCTGGGCTGTAGAT	NA	False	NA	NA	False	NA	NA	NA	61268960	61234231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61235355_61239484_61239558_61240270_61240366_61243487_61243621_61243891_61243962_61250177_61250254_61250345_61250455_61253512_61253581_61253652_61253767_61253848_61253947_61254219_61254318_61258498_61258544_61260076_61260120_61260943_61261093_61262581_61262651_61264180_61264283_61268738
56603	chr2	-	1267	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	-219	1245	-7	-11	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	2029	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCATAAAATGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	168072518	168052212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
56604	chr16	-	2289	5	FSM	ENSMUSG00000022756.18	ENSMUST00000172164.10	3281	5	53	939	3	-1	multi-exon	FALSE	canonical	3	3	junction_4	5.33853912601566	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTCATGTACACTGTGGT	NA	False	NA	NA	False	NA	NA	NA	17394532	17390820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17393830_17394503
56605	chr2	+	1557	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	191	-32	-7	0	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	452	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	174172072	174188537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
56606	chr9	+	2267	10	NNC	ENSMUSG00000037257.9	novel	5294	10	NA	NA	12	1547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	156.587765789865	1	104	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATGACTTATTTATAAAG	9226	False	NA	NA	False	NA	NA	NA	63509953	63549157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543668_63543766_63546321_63546427_63547679_63548857_63548914
56607	chr18	-	1342	9	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	24	-8138	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	116.432115414949	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCCCTGCCTACACCGA	NA	False	NA	NA	False	NA	NA	NA	70663315	70649897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659592_70659793_70661772_70661899_70663258
56609	chr1	-	3800	7	NIC	ENSMUSG00000016200.15	novel	7882	8	NA	NA	4	971	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	7.11024300256718	11	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCCTCAATGATTATAAAT	263	False	NA	NA	False	NA	NA	NA	192717948	192577322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_192579929_192584059_192584250_192612785_192613236_192615421_192615694_192662653_192662870_192709277_192709326_192717930
56610	chr13	+	1711	2	FSM	ENSMUSG00000097848.3	ENSMUST00000181742.2	1723	2	11	1	11	-1	multi-exon	FALSE	canonical	3	15	junction_1	0	78	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGACGACTGGTCTTTAG	6951	False	NA	NA	False	NA	NA	NA	99237224	99244087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_99237334_99242485
56611	chr7	+	938	8	NNC	ENSMUSG00000053898.13	novel	1267	10	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	248.629631937851	166	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28524733	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529698_28531229_28531293_28531428
56612	chr6	-	944	6	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	71	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2386.41091180878	3	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCGGGCTGATTGCTGG	NA	False	NA	NA	False	NA	NA	NA	125471683	125437230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438247_125440643_125440723_125441352_125441451_125449371_125449475_125471536
56613	chr11	+	590	1	Genic_Genomic	ENSMUSG00000036620.15	novel	NA	NA	NA	NA	-15	-19635	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACACACACATACACACA	NA	False	NA	NA	False	NA	NA	NA	50101701	50102291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_50101700_50102300
56614	chr11	+	1487	9	ISM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	-145	4	-3	-3	intron_retention	FALSE	canonical	3	268	junction_2	26.186828750347	169	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCATGCCTGAGTGCTG	4088	False	NA	NA	False	NA	NA	NA	69804872	69807413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023
56617	chr2	+	1859	12	NIC	ENSMUSG00000026743.17	novel	5063	24	NA	NA	-51	3110	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	89.7819212783384	1	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCGACCCAAAGGAAACAAA	4591	False	NA	NA	False	NA	NA	NA	18069395	18167511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18087321_18087537_18097594_18097646_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18164266_18164523_18167127
56618	chr11	+	1733	9	NIC	ENSMUSG00000034175.14	novel	1790	9	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	92.2190835727617	12	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	5049408	5056093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_5049478_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
56619	chr2	-	1662	8	NNC	ENSMUSG00000018322.11	novel	1923	7	NA	NA	8	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.70982138013	50	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATACAGCTGGCTCTGA	5956	False	NA	NA	False	NA	NA	NA	163913014	163895466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163895825_163896003_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
56622	chrX	+	1193	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	-1	8	-1	-5	multi-exon	FALSE	canonical	3	74	junction_1	80.9281123899477	1532	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAGACTTGTTGGCATG	NA	False	NA	NA	False	NA	NA	NA	72257953	72266051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72258088_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
56623	chr2	+	2066	11	NNC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	88.8045043902616	1	106	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGTTGTTTTATTCA	NA	False	NA	NA	False	NA	NA	NA	180367175	180384070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180367245_180373672_180373871_180374225_180374366_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381598_180381728_180382318_180382386_180383055
56624	chr5	+	1566	8	NIC	ENSMUSG00000025538.16	novel	1656	10	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	2	23	junction_3	159.496401341273	3	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGATTTATTTATTTATTA	NA	False	NA	NA	False	NA	NA	NA	129875860	129892272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129875928_129878741_129878899_129881714_129881827_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
56627	chr5	-	1324	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	24	5	24	-5	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	1413	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTTTGCCTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	137074965	137063851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
56628	chr15	-	2669	9	NNC	ENSMUSG00000001288.16	novel	2718	8	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	24.2973120941391	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAATCCGGGTGTGGAT	NA	False	NA	NA	False	NA	NA	NA	102154932	102143379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102144431_102144471_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102154494
56629	chr1	-	4487	2	Intergenic	novelGene_343	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	117	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTGACACAGAGTCTCAA	1069	False	NA	NA	False	NA	NA	NA	16687881	16681528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_16685840_16687705
56630	chr2	+	2827	18	FSM	ENSMUSG00000027605.19	ENSMUST00000029135.15	2931	18	95	9	10	-9	multi-exon	FALSE	canonical	2	49	junction_8	8.02030295659528	123	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACATAACTGCTTTTTTT	2102	False	NA	NA	False	NA	NA	NA	155359962	155404657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
56631	chr7	+	1335	3	NNC	ENSMUSG00000100153.3	novel	1437	2	NA	NA	-15	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	234.5	234	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACGT	NA	False	NA	NA	False	NA	NA	NA	119339133	119341450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_119339188_119339305_119340294_119341157
56632	chr17	-	3352	4	ISM	ENSMUSG00000056692.14	ENSMUST00000114863.10	3892	5	26630	23	26457	-12	3prime_fragment	FALSE	canonical	3	38	junction_2	4.18993502999218	320	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAAAAACCCCGCCT	NA	False	NA	NA	False	NA	NA	NA	28012969	27970231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27972970_27986884_27987214_28005044_28005243_28012882
56633	chr17	-	1820	19	NNC	ENSMUSG00000073460.6	novel	2092	19	NA	NA	19	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	33.3552242932696	55	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGACCTCTGTACATGGCC	2993	False	NA	NA	False	NA	NA	NA	13128814	13107620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111297_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
56634	chrX	-	1777	3	FSM	ENSMUSG00000031431.14	ENSMUST00000112995.3	1790	3	13	0	13	0	multi-exon	FALSE	canonical	3	51	junction_2	112.5	151	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	NA	NA	NA	139443404	139440276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_139441857_139442853_139442906_139443259
56637	chr7	-	467	2	ISM	ENSMUSG00000006335.17	ENSMUST00000156194.3	562	4	8120	135	7627	60	3prime_fragment	FALSE	canonical	3	273	junction_1	0	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTCCCCATCCCAAAGG	5441	False	NA	NA	False	NA	NA	NA	3624458	3623912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_3623983_3624061
56638	chr14	-	2814	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	-2	0	-2	0	multi-exon	FALSE	canonical	3	96	junction_3	140.753527684231	144	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4724	False	NA	NA	False	NA	NA	NA	52258160	52243538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
56641	chr11	-	1399	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	8	4	5	0	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	1053	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATATGTCTTCACTTT	415	False	NA	NA	False	NA	NA	NA	116029686	116022646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
56643	chr8	-	2231	4	FSM	ENSMUSG00000013150.16	ENSMUST00000155038.3	951	4	27	-1307	-7	1307	multi-exon	FALSE	canonical	2	4	junction_2	11.1455023315337	90	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATGGTGTGTGGTCGTT	NA	False	NA	NA	False	NA	NA	NA	106485235	106442741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106444283_106449480_106449677_106454619_106454964_106485085
56644	chr1	+	1024	4	FSM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	283	0	283	0	multi-exon	FALSE	canonical	3	3391	junction_2	148.912353043288	1769	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	37	False	NA	NA	False	NA	NA	NA	72863944	72891633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_72864124_72888244_72888472_72888722_72888864_72891156
56645	chr5	-	2995	1	FSM	ENSMUSG00000049606.17	ENSMUST00000200481.2	6256	1	4270	-1009	4270	1009	mono-exon	FALSE	NA	NA	NA	NA	NA	3	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGTTACTTCTAGATTA	NA	False	NA	NA	False	NA	NA	NA	106838619	106835624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_106835600_106838600
56646	chr13	-	2821	3	NIC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-78	3796	intron_retention	FALSE	canonical	3	1612	junction_2	83.5	3	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCTGTGACTTAAACCTC	6014	False	NA	NA	False	NA	NA	NA	74487953	74481804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74482542_74485509_74487331_74487690
56647	chr5	+	937	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	-15	0	-15	0	multi-exon	FALSE	canonical	3	318	junction_1	5	1916	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3392	False	NA	NA	False	NA	NA	NA	53424464	53435882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_53424701_53434484_53434542_53435238
56648	chr7	-	977	3	NIC	ENSMUSG00000003429.12	novel	661	5	NA	NA	-32	2	intron_retention	FALSE	canonical	3	29497	junction_1	638.5	6	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACAGAACAGGCTTGGA	NA	False	NA	NA	False	NA	NA	NA	44773807	44771814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44771983_44772252_44772975_44773720
56649	chr17	-	1979	2	FSM	ENSMUSG00000054723.7	ENSMUST00000233400.2	345	2	53	-1687	53	0	multi-exon	FALSE	canonical	0	0	junction_1	0	55	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTCTACCTTTTTTC	6576	False	NA	NA	False	NA	NA	NA	57024969	57020935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_57022818_57024872
56650	chr7	+	2988	1	Antisense	novelGene_ENSMUSG00000074024.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCTCTGGGCGCTCTGA	NA	False	NA	NA	False	NA	NA	NA	92387670	92390658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_92387700_92390700
56651	chrX	+	1223	11	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	18	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	253.013220998429	102	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAACCTGCGCTTTATTT	217	False	NA	NA	False	NA	NA	NA	73356656	73363758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362027_73362813_73362868_73362997_73363109_73363565
56652	chr1	-	2591	15	FSM	ENSMUSG00000026489.14	ENSMUST00000027766.13	4026	15	59	1376	0	405	multi-exon	FALSE	canonical	3	14	junction_5	4.06390281902126	29	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTATGCGTTCCGTGAA	3924	False	NA	NA	False	NA	NA	NA	180023526	179994178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_179995022_179995886_179995974_179996135_179996202_179996337_179996446_179996644_179996787_179996980_179997075_179997197_179997280_179997626_179997768_179997907_179997994_179999128_179999252_180001815_180001891_180006141_180006209_180006447_180006850_180009626_180009813_180023437
56653	chrX	-	1831	8	NIC	ENSMUSG00000031402.13	novel	1558	11	NA	NA	-8	162	intron_retention	FALSE	canonical	3	210	junction_2	21.3168516264787	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGTCCTGATTTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	74174567	74157008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
56654	chr14	+	1288	12	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	-16	-887	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	681.449633726356	1	62	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACATAATAGTATGTAAT	NA	False	NA	NA	False	NA	NA	NA	45567268	45586275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575055_45578216_45578354_45580813_45580979_45581103_45581185_45584200_45584273_45586039
56655	chr9	+	1274	7	NNC	ENSMUSG00000032215.16	novel	1543	6	NA	NA	13	-118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	347.474419522103	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTTTAAAAACCTTAAA	8593	False	NA	NA	False	NA	NA	NA	73020742	73030497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545_73029895_73030032
56656	chr14	-	1318	8	NIC	ENSMUSG00000060373.16	novel	1683	9	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	3	633	junction_2	1178.64943464794	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAACTGTCTCCAAAATAA	8742	False	NA	NA	False	NA	NA	NA	52341468	52312256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
56657	chr2	+	1845	10	NNC	ENSMUSG00000027242.15	novel	2315	11	NA	NA	-7	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	16.7648957167965	10	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTAATCAAAGAATAAAG	NA	False	NA	NA	False	NA	NA	NA	121337196	121363261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121362686
56658	chr6	+	1301	8	FSM	ENSMUSG00000029848.12	ENSMUST00000114997.3	1207	8	-93	-1	-43	1	multi-exon	FALSE	canonical	1	14	junction_2	25.1931315550691	111	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTGGTGTCCTGGCAG	NA	False	NA	NA	False	NA	NA	NA	34897851	34916278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34897990_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
56659	chr8	+	793	2	ISM	ENSMUSG00000031533.5	ENSMUST00000211083.2	2625	5	41	10834	41	-10834	5prime_fragment	FALSE	canonical	3	799	junction_1	0	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAGTTCTTATCATGGA	NA	False	NA	NA	False	NA	NA	NA	22901454	22905378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_22901601_22904731
56660	chr8	+	2087	1	Intergenic	novelGene_1598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGACCAGGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	22905477	22907564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_22905500_22907600
56661	chr2	-	1883	1	Genic_Genomic	ENSMUSG00000086748.2	novel	NA	NA	NA	NA	32879	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	48	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTTCATTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	10345973	10344090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_10344100_10346000
56662	chr3	+	1599	6	FSM	ENSMUSG00000069041.9	ENSMUST00000091184.9	2128	6	25	504	25	-504	multi-exon	FALSE	canonical	3	17	junction_3	1.93907194296653	122	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTAATGAGCCTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	40663309	40680023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_40663657_40670945_40671074_40674920_40675039_40675936_40676092_40677055_40677182_40679298
56663	chr3	-	1126	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	835	10	0	-6	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACAGAATTTATAAGTT	NA	False	NA	NA	False	NA	NA	NA	105866580	105850023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
56665	chr7	-	2704	1	NIC	ENSMUSG00000108043.3	novel	3226	7	NA	NA	11776	2350	mono-exon	FALSE	NA	NA	NA	NA	NA	15	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAACAAAAACTT	NA	False	NA	NA	False	NA	NA	NA	6966687	6963983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_6964000_6966700
56667	chr16	-	3353	2	FSM	ENSMUSG00000039763.11	ENSMUST00000049244.10	3368	2	5	10	-3	-7	multi-exon	FALSE	canonical	2	4	junction_1	0	17	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGATTGTTCTGTGGT	9254	False	NA	NA	False	NA	NA	NA	91415882	91411151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91414268_91415645
56668	chr10	+	1768	8	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	518.020328968362	1	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	NA	False	NA	NA	NA	72490728	72510796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493104_72493221_72509804
56669	chr7	-	2001	1	ISM	ENSMUSG00000109336.2	ENSMUST00000208199.2	4391	13	34653	16	2493	11	mono-exon	FALSE	NA	NA	NA	NA	NA	199	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAAACAAAATAACCAA	NA	False	NA	NA	False	NA	NA	NA	28100963	28098962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28099000_28101000
56670	chr2	+	1387	11	NNC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	-3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	794.587496755392	16	71	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATCCATGTCTCCCGAGG	8610	False	NA	NA	False	NA	NA	NA	61542100	61630712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_61542178_61550775_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595397_61614176_61614252_61615777_61615904_61627738_61627802_61630325
56671	chr19	-	979	5	ISM	ENSMUSG00000074818.14	ENSMUST00000237962.2	3100	16	-111	11551	-37	-11551	5prime_fragment	TRUE	canonical	3	17	junction_2	3.64005494464026	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCCAGACCACACGGGAG	NA	False	NA	NA	False	NA	NA	NA	45034193	45027604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_45027754_45028011_45028189_45028599_45028775_45029001_45029143_45033856
56672	chr8	+	1487	2	ISM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	-2	-1	1	1	intron_retention	FALSE	canonical	2	20	junction_1	0	276	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGGTCCTTCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	106427783	106430126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106427950_106428805
56673	chr4	+	1682	14	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-18	0	intron_retention	FALSE	canonical	0	0	junction_2	55.7171640238796	1	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	3060	False	NA	NA	False	NA	NA	NA	116671555	116676628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116671634_116672760_116672914_116673005_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
56674	chr2	+	4590	5	FSM	ENSMUSG00000062098.12	ENSMUST00000091556.12	4657	5	64	3	-33	-3	multi-exon	FALSE	canonical	3	50	junction_1	2.87228132326901	89	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATTTGCTTTTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	138098548	138129339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_138098675_138120885_138121178_138121668_138121760_138122292_138122412_138125377
56675	chr15	-	2082	12	FSM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	-37	-114	-27	0	multi-exon	FALSE	canonical	3	19	junction_5	21.834085113127	142	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGATTCTGCATTCA	NA	False	NA	NA	False	NA	NA	NA	79489337	79445697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
56676	chr8	-	700	2	ISM	ENSMUSG00000031633.5	ENSMUST00000155986.2	1275	3	0	1058	0	-1058	5prime_fragment	FALSE	canonical	3	7887	junction_1	0	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGGGTGAGAGGGGGGCT	NA	False	NA	NA	False	NA	NA	NA	46664067	46662064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_46662546_46663848
56677	chr9	+	3127	5	NNC	ENSMUSG00000032517.17	novel	3286	4	NA	NA	0	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8.07774721070176	9	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCCCCAATGCTTTGC	NA	False	NA	NA	False	NA	NA	NA	119978807	120005049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216_120003357_120003407
56678	chr11	+	876	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	-145	6	-18	-6	multi-exon	FALSE	canonical	3	940	junction_1	75.5	5211	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAACTAACTGTTTCTGT	2307	False	NA	NA	False	NA	NA	NA	97576633	97579441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97577042_97577326_97577447_97579093
56679	chrX	+	1161	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5382.46789741162	3	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059303	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059459_36060535_36060983_36061388_36061530_36062039
56680	chr9	-	1350	1	Antisense	novelGene_ENSMUSG00000032280.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGCTGGAGTCCACACA	NA	False	NA	NA	False	NA	NA	NA	61314747	61313397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_61313400_61314700
56681	chr12	+	651	1	Intergenic	novelGene_4416	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCCTTCCACAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	79850212	79850863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_79850200_79850900
56683	chr1	-	2702	5	ISM	ENSMUSG00000059149.18	ENSMUST00000159038.8	1957	10	15361	-1730	1627	1	3prime_fragment	FALSE	canonical	1	3	junction_3	2.1650635094611	15	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGTGTTATCCATCTT	NA	False	NA	NA	False	NA	NA	NA	131980288	131964520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_131966712_131968277_131968399_131969595_131969667_131974043_131974192_131980117
56684	chr10	-	1804	4	FSM	ENSMUSG00000075000.12	ENSMUST00000077839.13	1813	4	8	1	8	-1	multi-exon	FALSE	canonical	3	129	junction_3	30.2691628926573	294	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTGTTGAGTATGACTT	NA	False	NA	NA	False	NA	NA	NA	67121076	67102468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_67103946_67105884_67105926_67111348_67111434_67120875
56686	chr6	+	1864	10	NNC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	20	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	229.368698823532	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCCAGTAAGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	82923902	83007145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980752_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
56687	chr2	-	792	5	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-1517	-719	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	141.324980099061	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATAAGCGAACACATACA	NA	False	NA	NA	False	NA	NA	NA	177477956	177474302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177474330_177474581_177474890_177476043_177476105_177476312_177476440_177477687
56688	chr6	-	1783	2	FSM	ENSMUSG00000000938.12	ENSMUST00000121043.2	1436	2	378	-725	319	0	multi-exon	FALSE	canonical	3	11	junction_1	0	58	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTAATTTCACCTCTT	8724	False	NA	NA	False	NA	NA	NA	52217456	52208176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_52209761_52217257
56689	chr5	-	2163	5	ISM	ENSMUSG00000043410.17	ENSMUST00000112690.10	5018	40	36	75667	-2	-13793	5prime_fragment	FALSE	canonical	1	1	junction_4	5.53962995154008	24	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATGTTACTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	107073720	107063729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_107065494_107066242_107066356_107070678_107070777_107072696_107072799_107073634
56691	chr5	+	757	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	165	0	113	0	multi-exon	FALSE	canonical	3	318	junction_1	5	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3572	False	NA	NA	False	NA	NA	NA	53424644	53435882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_53424701_53434484_53434542_53435238
56692	chr2	+	1741	9	FSM	ENSMUSG00000000308.15	ENSMUST00000000317.13	1620	9	-133	12	-133	-11	multi-exon	FALSE	canonical	3	189	junction_3	17.8881070826401	532	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTATGTTGCAGCTGTCTG	1502	False	NA	NA	False	NA	NA	NA	121188957	121194206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
56696	chr10	+	3017	6	NNC	ENSMUSG00000019826.12	novel	2844	7	NA	NA	17	566	intron_retention	FALSE	canonical	2	2	junction_3	35.2386151827792	1	133	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGGTGGCCTTTTGGGCC	NA	False	NA	NA	False	NA	NA	NA	41326395	41340990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41326527_41327084_41328065_41331023_41331192_41331673_41332612_41338274_41338357_41340272
56697	chr8	-	1426	1	Intergenic	novelGene_1736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTTCCCCGTAAAGGTCC	3724	False	NA	NA	False	NA	NA	NA	111243565	111242139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111242100_111243600
56698	chr12	-	1731	11	Intergenic	novelGene_4476	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGACAAACTGAAGCTC	NA	False	NA	NA	False	NA	NA	NA	110538001	110452221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_110452385_110488922_110489124_110510507_110510604_110512127_110512440_110519266_110519325_110521273_110521331_110527731_110527896_110534154_110534290_110535387_110535490_110537129_110537198_110537626
56699	chr6	-	4738	24	Antisense	novelGene_ENSMUSG00000068699.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	41	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAGGACAGCCAATCTAG	NA	False	NA	NA	False	NA	NA	NA	29461856	29450160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_29450360_29450560_29450730_29450809_29450934_29451367_29451525_29451598_29451806_29452125_29452377_29452794_29452893_29453188_29453295_29453615_29453757_29454038_29454168_29454258_29454432_29455115_29455279_29455357_29455562_29455780_29455933_29456021_29456145_29456288_29456529_29456733_29457002_29457095_29457235_29457438_29457560_29458776_29458907_29459005_29459184_29459365_29459583_29460690_29460908_29461024
56700	chr3	-	3362	14	NNC	ENSMUSG00000008763.17	novel	7969	13	NA	NA	46	-2003	intron_retention	FALSE	canonical	1	2	junction_1	36.8126554004616	3	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTACACTGTGCAGTTGTAA	NA	False	NA	NA	False	NA	NA	NA	100592729	100471526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100472432_100474945_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334_100563591_100591876
56702	chr9	-	1530	13	ISM	ENSMUSG00000032126.17	ENSMUST00000097558.5	1534	14	157	-4	81	4	intron_retention	FALSE	canonical	3	699	junction_4	89.3942578319957	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTCTGAGACCTTTCTG	3412	False	NA	NA	False	NA	NA	NA	44253521	44247644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314
56703	chr5	-	1966	3	FSM	ENSMUSG00000029627.13	ENSMUST00000031632.9	1967	3	-16	17	-16	-17	multi-exon	FALSE	canonical	3	18	junction_2	1	74	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTTGTTGTGATTGTT	1575	False	NA	NA	False	NA	NA	NA	145138694	145131772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_145133010_145135486_145135611_145138089
56704	chr9	+	2963	19	NNC	ENSMUSG00000032187.17	novel	6354	34	NA	NA	1	-17261	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	207.936102780412	1	143	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCGTCGCCTACACAAAGT	1333	False	NA	NA	False	NA	NA	NA	21527560	21580263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548640_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553930_21558663_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230
56705	chr4	+	1081	9	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	-20	353	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1161.60782296565	1	34	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAGAAAGATACTCTTG	NA	False	NA	NA	False	NA	NA	NA	118478024	118483168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480570_118480819_118480888_118481331_118481430_118482745_118482883_118483016
56706	chr9	+	961	6	NIC	ENSMUSG00000035443.11	novel	918	8	NA	NA	3	0	intron_retention	FALSE	canonical	3	323	junction_5	122.182486470034	186	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	26911008	26918630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
56707	chr9	-	2085	11	Antisense	novelGene_ENSMUSG00000079260.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCAGCCGCTGCACCTCCG	NA	False	NA	NA	False	NA	NA	NA	114273567	114230215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_114230338_114246028_114246197_114249418_114249571_114250756_114250820_114253014_114253106_114259378_114259559_114263465_114263527_114266805_114266929_114267008_114267049_114272075_114272851_114273257
56708	chrX	+	1425	5	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	95	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	822.41640912618	1	93	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTGTTGCCTGACAAT	NA	False	NA	NA	False	NA	NA	NA	74558017	74578539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560820_74566846_74566965_74574690_74574830_74577513
56709	chr13	+	1708	8	FSM	ENSMUSG00000021326.14	ENSMUST00000021761.13	4204	8	629	1867	336	5	multi-exon	FALSE	canonical	3	719	junction_6	36.2209771220141	317	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTCATACGTTTTGTTT	1558	False	NA	NA	False	NA	NA	NA	21364729	21377026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374261_21374295_21375389_21375417_21376199
56710	chr9	+	719	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	33	140	33	-140	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTAGCCAGTCACAAGG	1607	False	NA	NA	False	NA	NA	NA	65967545	65973765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
56711	chr8	-	1375	9	NNC	ENSMUSG00000038515.11	novel	3013	8	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	164.373811782778	7	23	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTAAAATTAGTGTTCT	3637	False	NA	NA	False	NA	NA	NA	13250620	13226934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13239880_13240016_13242049_13242209_13250048_13250201_13250480
56713	chr7	+	1016	1	Antisense	novelGene_ENSMUSG00000086583.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	42	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCGAGAACTTCTTGC	6917	False	NA	NA	False	NA	NA	NA	114304454	114305470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_114304500_114305500
56714	chr16	-	2575	4	NNC	ENSMUSG00000022864.15	novel	6127	5	NA	NA	43	-2	intron_retention	FALSE	canonical	1	1	junction_1	142.856571427429	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTCCAGGGTTACTCAAT	3309	False	NA	NA	False	NA	NA	NA	78373479	78341850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_78343457_78344439_78344980_78372808_78372943_78373184
56715	chr3	+	566	1	FSM	ENSMUSG00000060438.6	ENSMUST00000074353.6	495	1	-36	-35	-36	35	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAAAAAAAAAAAAG	70	False	NA	NA	False	NA	NA	NA	95529552	95530118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95529600_95530100
56716	chr15	+	1620	10	NIC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	-33	-3	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	13.1740485635797	53	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAGCATAATGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	75734142	75739245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_75734331_75735253_75735478_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
56717	chr2	+	1275	13	NNC	ENSMUSG00000005881.14	novel	1377	13	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	330.465191897052	72	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	155850041	155860199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853301_155853327_155857900_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
56718	chr11	+	2219	7	Antisense	novelGene_ENSMUSG00002076008.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	19	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGGCGCGAGCTAGGACC	NA	False	NA	NA	False	NA	NA	NA	104247585	104333777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_104247703_104248306_104248427_104259507_104259607_104269512_104269652_104314746_104316120_104317249_104317295_104333451
56719	chr5	+	1985	16	ISM	ENSMUSG00000029095.18	ENSMUST00000101280.10	3042	19	29	26280	-15	0	5prime_fragment	FALSE	canonical	3	18	junction_8	27.3775252513606	70	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1542	False	NA	NA	False	NA	NA	NA	35915252	36015530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35989029_35989087_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169
56720	chr15	-	2506	10	NNC	ENSMUSG00000063765.13	novel	2548	6	NA	NA	5720	1471	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	131	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAGAGACACCGGCAGAG	NA	False	NA	NA	False	NA	NA	NA	81572509	81561025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81561117_81566122_81566353_81566769_81566846_81567150_81567257_81568041_81568192_81568511_81568584_81568913_81569147_81569578_81569648_81570411_81570520_81571138
56721	chr19	-	1805	10	FSM	ENSMUSG00000025050.9	ENSMUST00000026032.7	2159	10	354	0	340	0	multi-exon	FALSE	canonical	3	486	junction_3	49.2396507895471	248	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGGTGTGTTGACATA	NA	False	NA	NA	False	NA	NA	NA	47038989	47022055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_47023125_47025676_47025764_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
56722	chr7	+	1899	15	NIC	ENSMUSG00000002963.18	novel	2184	16	NA	NA	5	0	intron_retention	FALSE	canonical	3	182	junction_9	25.4738761743661	74	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCACAGCCATCTTGCTG	9354	False	NA	NA	False	NA	NA	NA	44506601	44512072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
56723	chr4	+	1347	9	NNC	ENSMUSG00000054405.15	novel	1401	9	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1321.07181863818	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAAGCCTTTGATGGTCT	2346	False	NA	NA	False	NA	NA	NA	132262875	132281042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132262970_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277786_132278874_132278922_132280327
56724	chr8	-	740	1	NIC	ENSMUSG00000015023.8	novel	2547	12	NA	NA	-3	-16561	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTTGACACAGCCCAAC	7713	False	NA	NA	False	NA	NA	NA	111724405	111723665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_111723700_111724400
56725	chr8	+	1216	7	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	46	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	42.7528426605244	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAACCCTTGTCTCAAAG	NA	False	NA	NA	False	NA	NA	NA	85635405	85638003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636444_85636599_85637314_85637822_85637964
56726	chr7	+	1558	6	FSM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	-69	-114	-69	-3	multi-exon	FALSE	canonical	3	59	junction_5	529.055913869224	498	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAATAAATGTTTGTATTT	2104	False	NA	NA	False	NA	NA	NA	3696692	3704000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
56727	chr4	-	4534	15	NIC	ENSMUSG00000078485.5	novel	1982	16	NA	NA	-1	3	intron_retention	FALSE	canonical	3	7	junction_2	3.51962428421569	10	97	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAAGGTTGTCTCTAGA	NA	False	NA	NA	False	NA	NA	NA	156312985	156306115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_156306340_156306424_156306474_156306707_156306936_156307096_156307238_156307397_156307539_156307754_156307896_156308022_156308172_156308313_156308390_156308994_156309076_156309181_156309296_156309373_156309499_156309651_156309725_156309804_156309886_156309982_156312774_156312865
56729	chr2	-	1607	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	72	3	10	-3	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	1	54	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTAGTAGGATCC	9073	False	NA	NA	False	NA	NA	NA	25246299	25242304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
56730	chr19	+	1036	7	NIC	ENSMUSG00000108414.2	novel	709	9	NA	NA	0	-34	intron_retention	FALSE	canonical	3	781	junction_1	97.6804597768777	122	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGTTCTAGCAATA	NA	False	NA	NA	False	NA	NA	NA	8701503	8703771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8703467_8703602
56731	chr11	+	1302	4	FSM	ENSMUSG00000090266.11	ENSMUST00000140869.2	541	4	-85	-676	5	-11	multi-exon	FALSE	canonical	3	38	junction_2	46.2048578494609	357	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGCTTAGACTACTCC	8980	False	NA	NA	False	NA	NA	NA	116734415	116740555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726
56732	chr2	-	3146	1	ISM	ENSMUSG00000042272.18	ENSMUST00000102660.8	8990	18	81004	1279	14663	-1279	mono-exon	FALSE	NA	NA	NA	NA	NA	8	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAAGCCCTGTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	77015108	77011962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_77012000_77015100
56734	chr14	-	1546	2	FSM	ENSMUSG00000002320.16	ENSMUST00000127473.2	2271	2	34	691	3	-343	multi-exon	FALSE	canonical	3	368	junction_1	0	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAAAAGTTCAGTG	5209	False	NA	NA	False	NA	NA	NA	55880794	55878243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55879046_55880050
56735	chr3	-	1950	12	ISM	ENSMUSG00000028096.14	ENSMUST00000029738.14	4598	14	77	4370	43	-1165	5prime_fragment	FALSE	canonical	3	110	junction_3	16.3322932147599	2	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGAGCCTGCTGTACTTT	1940	False	NA	NA	False	NA	NA	NA	96812585	96779966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
56736	chr11	-	3506	15	Intergenic	novelGene_2407	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	14	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAGCTGCGGGGCACAAT	NA	False	NA	NA	False	NA	NA	NA	77345315	77107058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_77107341_77218277_77218321_77283873_77283977_77289027_77289093_77298946_77299065_77307232_77307309_77308290_77308357_77312040_77312237_77316126_77316219_77316346_77316475_77320604_77320657_77328449_77328599_77332683_77332883_77340211_77341047_77344213
56737	chr17	-	839	7	NIC	ENSMUSG00000061613.14	novel	923	8	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	95	junction_5	2338.47820886433	101	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	NA	False	NA	NA	NA	31877726	31866054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31873952_31874041_31877626
56739	chr17	+	1136	6	NNC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	240	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	467.412194962861	69	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGTGTTGTTTTTACACA	1916	False	NA	NA	False	NA	NA	NA	35269181	35277703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35269463_35271410_35271521_35271756_35271841_35272034_35272116_35274202_35274385_35277305
56741	chrX	-	1444	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	-12	-2	-12	2	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	1755	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCCAATTTCTCATTCAA	NA	False	NA	NA	False	NA	NA	NA	139857450	139849175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
56742	chr7	+	1357	2	NNC	ENSMUSG00000055200.8	novel	1329	2	NA	NA	29	-8	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	17	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAATATTGGAATTGTAA	NA	False	NA	NA	False	NA	NA	NA	27173221	27176781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27173362_27175564
56743	chr9	-	1701	10	NNC	ENSMUSG00000066357.7	novel	4163	6	NA	NA	6153	2415	intron_retention	TRUE	non_canonical	0	0	junction_1	0	5	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGAACAGGAAGTAAGT	2991	False	NA	NA	False	NA	NA	NA	108449785	108447094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108447278_108447347_108447644_108447761_108448013_108448089_108448170_108448242_108448371_108448642_108448717_108448809_108448880_108448982_108449496_108449590_108449660_108449748
56745	chr7	+	618	6	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	2	-429	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1496.61011622934	58	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTTCAGACTCAGCTAAA	NA	False	NA	NA	False	NA	NA	NA	137039386	137069894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054460_137065831_137065867_137066143_137066237_137069661
56746	chr8	-	3106	23	ISM	ENSMUSG00000058301.9	ENSMUST00000215817.2	4518	24	8933	891	8933	-891	3prime_fragment	TRUE	canonical	0	0	junction_1	122.086238318563	43	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAATAAATGGATACCT	8077	False	NA	NA	False	NA	NA	NA	70796928	70785065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_70785130_70785269_70785393_70785622_70785841_70785920_70786083_70786542_70786625_70786722_70786898_70787267_70787411_70787882_70788040_70788303_70788422_70789666_70789881_70790138_70790283_70790855_70790971_70791046_70791212_70791535_70791655_70791729_70791890_70791973_70792083_70792392_70792492_70792664_70792750_70793199_70793362_70794109_70794291_70794659_70794828_70795984_70796075_70796875
56747	chr2	+	1803	10	FSM	ENSMUSG00000027207.16	ENSMUST00000028636.13	2605	10	88	714	74	-2	multi-exon	FALSE	canonical	3	11	junction_1	32.0916896284673	27	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGTGTTGCTCTTGAA	NA	False	NA	NA	False	NA	NA	NA	125701141	125825505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_125701298_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
56748	chr6	+	1371	6	NIC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_4	90.4464482442511	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2335	False	NA	NA	False	NA	NA	NA	113303959	113311149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310591_113310642_113310802
56749	chr2	-	2068	5	FSM	ENSMUSG00000010914.11	ENSMUST00000111183.2	2078	5	4	6	4	-6	multi-exon	FALSE	canonical	3	362	junction_1	7.44983221287567	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGATTTGCCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	102903803	102869969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
56751	chr16	-	1371	6	NIC	ENSMUSG00000022972.11	novel	1430	7	NA	NA	-3	-36	intron_retention	FALSE	canonical	3	724	junction_3	17.3827500701126	1139	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTAGGACAGCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	90731717	90722732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
56752	chr8	+	1325	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-82	-23	multi-exon	FALSE	canonical	0	0	junction_5	516.539253106673	13	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAATAAATATGAAATTTC	NA	False	NA	NA	False	NA	NA	NA	19834679	20055475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036156_20045732_20045999_20052877_20053142_20055368
56753	chr5	-	1560	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	-2	-129	-2	129	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	737	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGATTTTAAAACCATG	NA	False	NA	NA	False	NA	NA	NA	139446259	139345364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
56754	chr8	+	935	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	-12	2	-12	-2	multi-exon	FALSE	canonical	3	2963	junction_1	310.191070148707	3005	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCAGCTGTTCTTCTGCC	NA	False	NA	NA	False	NA	NA	NA	71125885	71131400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
56755	chr6	+	1018	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	536	422	7	-253	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTTTAAGAAGTTAGAG	1351	False	NA	NA	False	NA	NA	NA	124807186	124810242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
56756	chr17	+	1688	13	FSM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	128	9	11	-9	multi-exon	FALSE	canonical	3	176	junction_8	11.7434970184448	199	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTATCTATACTTCT	NA	False	NA	NA	False	NA	NA	NA	36134249	36143674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
56757	chr11	+	925	4	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	3	-274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAAATATATCATGCCTC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623922_75642719_75642785_75655640_75656134_75656210
56758	chr11	+	1848	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	-2	0	-2	0	multi-exon	FALSE	canonical	3	68	junction_2	16.5	195	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTGTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	5712126	5731876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_5712241_5715508_5715572_5730205
56759	chr10	+	2095	4	NNC	ENSMUSG00000094076.8	novel	4725	4	NA	NA	-8	544	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	19.0146142626022	8	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATACTGCCATCTATTT	4185	False	NA	NA	False	NA	NA	NA	81648011	81659738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81648118_81656960_81657088_81657287_81657380_81657968
56761	chr6	+	2125	1	Intergenic	novelGene_4241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGAGTAGTGGCGCCTT	NA	False	NA	NA	False	NA	NA	NA	124455624	124457749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_124455600_124457700
56762	chr16	+	1659	6	NNC	ENSMUSG00000022744.13	novel	1540	6	NA	NA	19	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	156.329139957975	88	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAGTGTCTAAATTGTT	NA	False	NA	NA	False	NA	NA	NA	58548306	58554599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201_58553971_58554409
56767	chr1	+	1461	6	NNC	ENSMUSG00000042751.15	novel	4626	11	NA	NA	-3063	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	103.918044631334	19	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTTGTGTCTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	152966162	152995010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_152966288_152969782_152969860_152987887_152987990_152988125_152988194_152991313_152991621_152994228
56768	chr5	+	2856	1	Intergenic	novelGene_860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTCTATCTTACCAAT	NA	False	NA	NA	False	NA	NA	NA	129606965	129609821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_129607000_129609800
56769	chr5	+	3669	16	Antisense	novelGene_ENSMUSG00000035266.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	56	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGCACAGGGTCATTT	NA	False	NA	NA	False	NA	NA	NA	100910020	100941701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100910503_100912806_100912941_100914552_100914667_100916146_100916322_100918263_100918363_100919599_100919757_100921809_100922031_100926597_100926701_100927015_100927160_100930823_100931063_100933146_100933294_100934849_100934951_100937995_100938103_100939202_100939278_100939644_100939844_100940529
56770	chr19	-	1213	10	NNC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	418.380593464437	43	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5829	False	NA	NA	False	NA	NA	NA	46327092	46318978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320260_46320351_46320496_46321056_46321141_46326751_46326870_46326958
56771	chr17	+	1129	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174860.8	691	4	-50	-388	-2	-4	multi-exon	FALSE	canonical	3	1479	junction_1	117.83132954449	1240	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAATTCCTGGTTTGTCG	233	False	NA	NA	False	NA	NA	NA	35201094	35204861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35201664_35204084_35204116_35204224_35204285_35204392
56772	chr8	+	1408	9	NIC	ENSMUSG00000031505.12	novel	1359	10	NA	NA	9	3	intron_retention	FALSE	canonical	3	77	junction_1	66.9261486640312	545	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGTTTGTGGTTGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	11547601	11563290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559558_11560226_11560348_11561876_11561998_11562894
56773	chr7	+	2506	12	Fusion	ENSMUSG00000036854.15_ENSMUSG00000109102.2	novel	1980	3	NA	NA	-532	-2339	multi-exon	TRUE	non_canonical	0	0	junction_1	0	77	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCCGCCCCTTTCTGGCT	6228	False	NA	NA	False	NA	NA	NA	30238558	30251730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_30239007_30239172_30239256_30239343_30240265_30240347_30240527_30242914_30243042_30243117_30243199_30245549_30245650_30245726_30245855_30248466_30248632_30249029_30249129_30250182_30250266_30251638
56774	chr3	+	857	7	NNC	ENSMUSG00000005687.15	novel	1467	7	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1424.08868520655	36	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGTGTGGCTATAGT	5010	False	NA	NA	False	NA	NA	NA	103079051	103086144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084707_103085846
56775	chr11	+	993	5	NNC	ENSMUSG00000020386.6	novel	1201	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	327.94159159826	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGTTGGGCAGCTGTT	3572	False	NA	NA	False	NA	NA	NA	51654520	51682753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_51654619_51668313_51668359_51678962_51679081_51680023_51680156_51682153
56776	chr15	+	1092	3	FSM	ENSMUSG00000054136.7	ENSMUST00000066991.7	1298	3	206	0	206	0	multi-exon	FALSE	canonical	3	63	junction_1	15	734	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCCACTCTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	89207128	89208934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_89207337_89207479_89207604_89208174
56779	chr19	+	3686	24	ISM	ENSMUSG00000024998.18	ENSMUST00000169713.9	9439	32	192829	5147	-5344	-2912	internal_fragment	FALSE	canonical	1	8	junction_4	4.79011269012755	13	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCAGAGGATCCTCTTG	NA	False	NA	NA	False	NA	NA	NA	38705469	38768327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_38705684_38707999_38708183_38709417_38709536_38710255_38710365_38713144_38713268_38713353_38713491_38715211_38715451_38717126_38717189_38717270_38717437_38724874_38724983_38726366_38726484_38727691_38727851_38734209_38734340_38737735_38737858_38738884_38739003_38747258_38747391_38748422_38748711_38753743_38753908_38755575_38755838_38757894_38758014_38758790_38758920_38761263_38761474_38766300_38766460_38768209
56780	chr12	+	1380	7	NNC	ENSMUSG00000020630.10	novel	1368	7	NA	NA	1	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	93.8183824678772	109	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACATCTAGTTTGAGTT	NA	False	NA	NA	False	NA	NA	NA	28699623	28709587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707627_28707717_28708169_28708295_28708991
56781	chr5	-	4498	5	ISM	ENSMUSG00000029298.16	ENSMUST00000031238.13	4381	11	26477	-1132	-1036	1132	3prime_fragment	FALSE	canonical	1	2	junction_4	2.06155281280883	13	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCTTTGAGGAATTACA	7907	False	NA	NA	False	NA	NA	NA	105231665	105224363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_105228131_105228995_105229190_105229516_105229620_105230569_105230777_105231438
56783	chr12	+	2238	11	NNC	ENSMUSG00000037486.19	novel	1483	12	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	23.8989539520038	108	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGCTTTCCTATATTTA	NA	False	NA	NA	False	NA	NA	NA	3476908	3547062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3477213_3492473_3492562_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224
56785	chr4	+	3137	5	Intergenic	novelGene_1989	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.433012701892219	3	63	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	137527883	137542627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_137527939_137534380_137534552_137536696_137538111_137539067_137540545_137542607
56786	chr2	-	1375	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	65	1	65	-1	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	1480	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTGTGTACTTTATTTAC	5394	False	NA	NA	False	NA	NA	NA	174280767	174269286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
56787	chr5	-	565	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	-53	-71	-53	71	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGACTTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	129205634	129205069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129205100_129205600
56788	chr5	-	1682	2	ISM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	16436	5	16360	-5	3prime_fragment	TRUE	canonical	3	1407	junction_1	0	6	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCATGTGTCTGTGGCGC	1344	False	NA	NA	False	NA	NA	NA	114812609	114807463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_114808651_114812114
56790	chr11	+	1393	12	NNC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	403.747896138622	3	36	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	80319461	80364074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355843_80355903_80360627_80360754_80361208_80361230_80363765
56792	chr7	-	1774	10	Fusion	ENSMUSG00000005575.17_ENSMUSG00000030380.18	novel	1472	6	NA	NA	45	0	multi-exon	FALSE	canonical	0	0	junction_5	1135.68789183222	8	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	12788547	12769164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12785417_12785539_12785659_12785731_12786109_12786294_12786669_12787109_12788407
56794	chr13	+	685	3	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	26	-21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7988	False	NA	NA	False	NA	NA	NA	74554553	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554688_74554800_74555266_74555358
56795	chrX	-	1739	4	Antisense	novelGene_ENSMUSG00000073125.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCTCAATGTACCCAGAA	NA	False	NA	NA	False	NA	NA	NA	72246528	72241373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72241990_72243351_72243488_72245452_72245560_72245648
56796	chr15	-	1329	3	Antisense	novelGene_ENSMUSG00000042406.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACCCGAGCACACAACTT	NA	False	NA	NA	False	NA	NA	NA	80141708	80139745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80139888_80140410_80140723_80140833
56797	chr1	-	705	2	Genic_Genomic	ENSMUSG00000089782.2	novel	489	1	NA	NA	-113	244	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATGTA	8430	False	NA	NA	False	NA	NA	NA	97877227	97876381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_97876699_97876839
56798	chr7	-	422	3	ISM	ENSMUSG00000006019.16	ENSMUST00000094816.3	4073	17	23072	-2	5280	-1	3prime_fragment	FALSE	canonical	3	90	junction_1	9	14	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTGCCTCCCTCACCC	NA	False	NA	NA	False	NA	NA	NA	15932846	15931146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_15931356_15932490_15932627_15932769
56799	chr11	+	2062	13	Antisense	novelGene_ENSMUSG00000000320.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAACTGTGATGAGGTTGC	2457	False	NA	NA	False	NA	NA	NA	70132858	70145319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_70133387_70133509_70133682_70133802_70133903_70136685_70136778_70137723_70137896_70138088_70138177_70140876_70141083_70142275_70142420_70143223_70143390_70143623_70143724_70143835_70143966_70144075_70144155_70145234
56800	chr2	+	2198	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110186.9	2170	8	-35	7	-15	-2	multi-exon	FALSE	canonical	3	32	junction_6	48.183746942177	78	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACGCTCCTTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	131333827	131367085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366163_131366254_131366662
56802	chr13	+	1490	5	NNC	ENSMUSG00000021458.18	novel	587	3	NA	NA	-1765	-16	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	54.8241507002161	25	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGCCTTCCTGCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	63418549	63450669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_63418614_63429955_63430073_63444671_63444759_63446525_63446671_63449592
56803	chr11	-	1758	11	NNC	ENSMUSG00000015869.17	novel	1841	10	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	267.241183203488	206	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTCTTCAGTCGGCTGC	NA	False	NA	NA	False	NA	NA	NA	116381163	116361681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873_116380961_116381021
56804	chr14	-	2175	2	ISM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	5282	1	5282	-1	3prime_fragment	FALSE	canonical	3	225	junction_1	0	176	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAAGGTTGTATTTAT	NA	False	NA	NA	False	NA	NA	NA	14250351	14246210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_14247587_14249552
56805	chr10	-	1294	5	NNC	ENSMUSG00000020083.14	novel	1769	4	NA	NA	-7	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	57.1505686760858	345	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	NA	False	NA	NA	NA	61946799	61943988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61944903_61945315_61945426_61945662_61945792_61946014_61946094_61946737
56806	chr16	+	1350	7	NIC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-2	-28	combination_of_known_splicesites	FALSE	canonical	2	9	junction_3	197.131653695922	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGTTGTAAAATATTACAC	NA	False	NA	NA	False	NA	NA	NA	48104093	48114572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48104205_48108240_48108359_48109401_48109464_48109690_48109742_48111376_48111678_48113273_48113470_48114061
56808	chr4	-	1451	13	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	4	-1431	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	492.555298643941	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCCTCCAAAGAGGAGAAC	NA	False	NA	NA	False	NA	NA	NA	135080441	135052509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059552_135065252_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071842_135074425_135074516_135080407
56809	chr9	+	941	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	-48	-1	-39	1	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	209	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGGTGTGGGCTGTGTT	1526	False	NA	NA	False	NA	NA	NA	65967464	65973906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
56810	chr2	-	2011	3	NNC	ENSMUSG00000081949.4	novel	401	4	NA	NA	-144	12239	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	1.5	26	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATATATATAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	174951952	174934007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174935811_174947682_174947744_174951805
56811	chr16	-	3018	7	FSM	ENSMUSG00000022853.8	ENSMUST00000023559.7	2981	7	-46	9	-46	-9	multi-exon	FALSE	canonical	3	14	junction_3	3.35410196624968	21	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAAGCCTTTCATTGTGT	NA	False	NA	NA	False	NA	NA	NA	21606603	21580045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21582087_21584975_21585318_21589165_21589271_21592244_21592357_21594094_21594262_21596548_21596653_21606456
56812	chr11	+	824	4	FSM	ENSMUSG00000024414.14	ENSMUST00000125148.2	439	4	-18	-367	2	-5	multi-exon	FALSE	canonical	3	93	junction_1	344.111416065592	179	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGATGGAAAGGGACAG	NA	False	NA	NA	False	NA	NA	NA	94544838	94550910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_94544987_94547312_94547445_94547808_94547877_94550434
56813	chr2	-	1373	5	NIC	ENSMUSG00000072980.4	novel	1082	6	NA	NA	-9	-54	combination_of_known_splicesites	FALSE	canonical	3	58	junction_3	272.52247613729	16	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAGTATCTGGAAACAGC	7471	False	NA	NA	False	NA	NA	NA	119448959	119440046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_119440846_119442232_119442337_119443492_119443575_119448334_119448402_119448638
56814	chr6	+	2191	2	NNC	ENSMUSG00000107873.2	novel	788	3	NA	NA	452	1128	intron_retention	FALSE	non_canonical	0	0	junction_1	0	27	26	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAGAAACTAAACCAA	NA	False	NA	NA	False	NA	NA	NA	128185533	128189735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_128185769_128187779
56816	chr8	-	3022	11	NNC	ENSMUSG00000031949.18	novel	3159	10	NA	NA	31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.8377062077379	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGAAGTAGTAACATTTT	NA	False	NA	NA	False	NA	NA	NA	112718903	112693544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112694331_112694431_112695177_112698736_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
56818	chr8	-	1834	8	FSM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	513	8	311	-6	multi-exon	FALSE	canonical	0	0	junction_5	35.6330504688314	82	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGACACTGGGCCGTCTT	NA	False	NA	NA	False	NA	NA	NA	71291851	71287780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622_71291690_71291771
56819	chr1	+	1853	5	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	24583	-12	intron_retention	FALSE	canonical	3	12	junction_1	75.0083328704218	15	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGGAAATTCACTTTTCT	NA	False	NA	NA	False	NA	NA	NA	165982618	165994066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_165982709_165985081_165985238_165991341_165991462_165992148_165992285_165992715
56820	chr19	-	1343	8	FSM	ENSMUSG00000024792.10	ENSMUST00000160977.8	922	8	-15	-406	-3	0	multi-exon	FALSE	canonical	3	381	junction_7	88.3658905474556	444	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6453	False	NA	NA	False	NA	NA	NA	6134960	6130791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
56821	chr10	+	1321	10	FSM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	-37	-7	13	5	multi-exon	FALSE	canonical	3	51	junction_1	172.048514547568	165	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTATTGTGTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	87982901	88014257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
56822	chr6	+	1054	9	NNC	ENSMUSG00000040112.10	novel	4162	8	NA	NA	90	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	342.922709039515	2	15	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTATTGTCTTACGTC	NA	False	NA	NA	False	NA	NA	NA	146944351	146972396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146944399_146946029_146946141_146947608_146947647_146949631_146949800_146951325_146951372_146957370_146957490_146961639_146961750_146962920_146962991_146972051
56823	chr3	-	652	5	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	77	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4286.62679154601	61	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCGTTTGCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	86049932	86045256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045388_86046444_86046556_86048545_86048734_86049004_86049109_86049814
56824	chr11	-	708	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_3	5695.03926127819	579	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	97673210	97668863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97668991_97669090_97669205_97672159_97672289_97672418_97672716_97673169
56825	chr13	-	1552	15	NIC	ENSMUSG00000039233.13	novel	1853	17	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	44.9072172736778	1	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGATTTCTCTGCCCTTT	NA	False	NA	NA	False	NA	NA	NA	14214171	14172537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14203860_14203992_14214122
56826	chr2	+	1786	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	57	509	57	-509	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTTCCCAACACTGCTC	NA	False	NA	NA	False	NA	NA	NA	122065286	122095312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
56827	chr12	+	1832	14	NNC	ENSMUSG00000059669.9	novel	2209	15	NA	NA	1817	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	71.8636117811014	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGACACCTGGAAACTTG	NA	False	NA	NA	False	NA	NA	NA	24550445	24608535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594346_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
56828	chr6	-	1621	1	NIC	ENSMUSG00000055239.11	novel	3251	7	NA	NA	5401	177	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAAAGCTTTCCCAGCGT	NA	False	NA	NA	False	NA	NA	NA	72820995	72819374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_72819400_72821000
56829	chr3	-	2359	1	Genic_Genomic	ENSMUSG00000084370.4	novel	NA	NA	NA	NA	-87	442	mono-exon	FALSE	NA	NA	NA	NA	NA	16	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAATAATAAC	NA	False	NA	NA	False	NA	NA	NA	78396031	78393672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_78393700_78396000
56835	chr8	-	2057	1	Antisense	novelGene_ENSMUSG00000004568.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCCGGCCTCCTAGGAGC	NA	False	NA	NA	False	NA	NA	NA	3445096	3443039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3443000_3445100
56836	chr16	+	1011	11	NIC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	9	-46	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	140.51508815782	16	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTACAGTTACTGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	18631059	18653108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18645004_18645053_18645767_18645857_18646385_18646468_18652985
56837	chr14	-	2322	6	FSM	ENSMUSG00000002320.16	ENSMUST00000122358.8	2517	6	191	4	-55	-1	multi-exon	FALSE	canonical	2	8	junction_5	133.851260733696	1	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCCTGTCGTTGGAAGT	4931	False	NA	NA	False	NA	NA	NA	55881072	55873425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880838
56838	chr1	+	2188	11	FSM	ENSMUSG00000026027.14	ENSMUST00000123301.8	2070	11	7	-125	7	0	multi-exon	FALSE	canonical	1	4	junction_7	23.192455669894	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCTTTTATATATTTTG	NA	False	NA	NA	False	NA	NA	NA	59012687	59034281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031809_59031915_59032051_59032297_59032719_59032763_59033451
56839	chr10	-	2287	12	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	3200	-14	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	18.3127106650224	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGGTTTCTCCTTCATTG	NA	False	NA	NA	False	NA	NA	NA	42351076	42188597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42350930
56842	chr13	+	1318	1	Intergenic	novelGene_1502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTCCCCTCAGAGCTTAA	1528	False	NA	NA	False	NA	NA	NA	93302760	93304078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_93302800_93304100
56843	chr4	-	2326	10	NNC	ENSMUSG00000023232.18	novel	1881	10	NA	NA	8518	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	3.97212509593766	32	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCCTCCCATGTCTTG	7563	False	NA	NA	False	NA	NA	NA	130160493	130147289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_130147859_130149148_130149359_130152020_130152157_130152493_130152585_130154435_130154606_130156820_130156959_130157374_130157455_130158053_130158245_130158861_130159024_130159914
56844	chrX	+	2148	5	FSM	ENSMUSG00000034160.14	ENSMUST00000153979.8	1066	5	149	-1231	103	963	multi-exon	FALSE	canonical	3	8	junction_4	141.204417423819	5	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCCTATACAAATTTTC	NA	False	NA	NA	False	NA	NA	NA	100683848	100699155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100695815_100697581
56845	chr7	-	974	1	ISM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	16430	179	6134	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTATAGGGAGGTATGC	4450	False	NA	NA	False	NA	NA	NA	19638655	19637681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19637700_19638700
56846	chr5	-	2080	12	NNC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	233.217133600768	1	111	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGTGTTAATTTAAGTT	4351	False	NA	NA	False	NA	NA	NA	123887447	123866784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123873884_123873960_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883237_123887358
56847	chr2	-	1797	16	NNC	ENSMUSG00000027639.17	novel	3926	16	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	53.9526541412829	1	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATATCTGCGGTTAGT	NA	False	NA	NA	False	NA	NA	NA	156977008	156941319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954777_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
56848	chr14	+	1759	5	NNC	ENSMUSG00000021900.11	novel	2324	4	NA	NA	15	-385	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8.63133825081603	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATACTGGCTGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	31363028	31390151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697_31389829_31389993
56849	chr4	+	1646	7	FSM	ENSMUSG00000029076.15	ENSMUST00000050078.13	5177	7	114	3417	114	-17	multi-exon	FALSE	canonical	3	674	junction_3	38.3521692853076	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGCTTAATAGGCTATGT	NA	False	NA	NA	False	NA	NA	NA	156077481	156094650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
56850	chr2	-	3534	6	NNC	ENSMUSG00000084946.3	novel	700	3	NA	NA	9292	63098	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCGGTCACGTGGCCAA	NA	False	NA	NA	False	NA	NA	NA	71348971	71283699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71283741_71337126_71337283_71340080_71340233_71341753_71341902_71342466_71342512_71345979
56852	chr19	+	1196	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	586	-61	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	926.630589825309	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTTCTCCAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	47721228	47723966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47721329_47721379_47721428_47721957_47722351_47723262_47723765_47723813
56853	chr18	+	1574	1	NIC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	63928	-15617	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACCAGAAGCAAAGCAAAAC	NA	False	NA	NA	False	NA	NA	NA	77217442	77219016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_77217400_77219000
56854	chr13	-	1273	9	NNC	ENSMUSG00000003062.14	novel	1128	8	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	340.955069437309	137	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTCATGCCCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	19579927	19549126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_19549516_19549601_19549725_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
56855	chr19	+	653	1	NIC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	2814	2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5543406	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5543400_5544100
56856	chr11	-	2564	8	NNC	ENSMUSG00000001034.18	novel	3069	7	NA	NA	36	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	105.702702068064	1	112	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACAAGGTTTTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	61385056	61379662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61380097_61380189_61380324_61380669_61380755_61381171_61381331_61381433_61382513_61383731_61383896_61384422_61384781_61384905
56857	chr5	-	1376	12	FSM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	179	4	-61	-4	multi-exon	FALSE	canonical	3	674	junction_10	35.0345756018723	1079	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATCTGATGGACTGTGGA	5242	False	NA	NA	False	NA	NA	NA	135773123	135764342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
56858	chr8	+	1708	7	FSM	ENSMUSG00000031613.10	ENSMUST00000034026.10	1683	7	-24	-1	-24	1	multi-exon	FALSE	canonical	3	14	junction_2	3.18416219575713	109	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAAATTGCCTATTCCTTT	NA	False	NA	NA	False	NA	NA	NA	56747595	56774079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_56747748_56747973_56748098_56751390_56751498_56760628_56760726_56770784_56770862_56772027_56772192_56773092
56859	chr9	-	1108	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	-62	0	11	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	372	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7897	False	NA	NA	False	NA	NA	NA	50440013	50432916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
56860	chr11	+	3399	15	NNC	ENSMUSG00000020604.14	novel	3273	14	NA	NA	17	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.25529396145881	25	18	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATTGCCATGATTTTA	432	False	NA	NA	False	NA	NA	NA	109364216	109464154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109364248_109369195_109369336_109376301_109376400_109376531_109376584_109380593_109381477_109408067_109408256_109412482_109412531_109416208_109416321_109418571_109418710_109424734_109424932_109426082_109426164_109438839_109438949_109448776_109448898_109454007_109454099_109463044
56861	chr14	+	1289	8	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-10	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	427.21771919226	2	52	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCACTTCAACAGCATCA	NA	False	NA	NA	False	NA	NA	NA	8348819	8357537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353511_8353616_8355471_8355641_8357159_8357238_8357376
56862	chr4	+	1729	7	Antisense	novelGene_ENSMUSG00000029022.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTAGCCACCTACCCCT	4386	False	NA	NA	False	NA	NA	NA	147945314	147950675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147945542_147945809_147945951_147946705_147946802_147946896_147947407_147947484_147947599_147949648_147949731_147950116
56864	chr2	-	2961	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-16	2298	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.0991283616501	1	141	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTGGAGCTCCGTCATT	NA	False	NA	NA	False	NA	NA	NA	156681756	156672670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156673609_156673654_156675347_156679742_156679834_156680337_156680457_156681635
56865	chr8	+	2418	3	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	18	-11371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	29.5	4	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCACAAGGTCCCCATT	NA	False	NA	NA	False	NA	NA	NA	73197741	73201124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73197834_73198593_73199907_73200111
56866	chr3	-	3057	11	NNC	ENSMUSG00000028158.15	novel	3963	18	NA	NA	17081	-3	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_5	5.11957029446808	16	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCCCCTTTTGTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	137820057	137795617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_137796991_137798339_137798511_137800719_137800845_137808847_137809076_137810427_137810546_137810699_137810802_137812862_137813072_137814716_137814930_137817404_137817513_137818220_137818390_137819816
56867	chr2	+	2214	10	Genic_Genomic	ENSMUSG00000058812.3	novel	951	1	NA	NA	-20173	-734	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	34	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGGATCCTAACTGCTGA	NA	False	NA	NA	False	NA	NA	NA	163466596	163486986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_163467500_163468172_163468402_163469795_163469976_163471049_163471140_163472847_163473020_163474028_163474166_163476356_163476437_163478734_163478925_163481085_163481254_163486921
56868	chr17	+	1842	14	NNC	ENSMUSG00000041831.18	novel	1504	9	NA	NA	3232	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.5487399363893	5	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAACTCCCAGCATTTATT	4624	False	NA	NA	False	NA	NA	NA	6946551	7005444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6946690_6954660_6954726_6967051_6967104_6968636_6968704_6970278_6970358_6973292_6973418_6976495_6976631_6982782_6982962_6995637_6995741_7000350_7000522_7001864_7001971_7002776_7002874_7003809_7004016_7005125
56869	chr9	+	2008	8	FSM	ENSMUSG00000032329.5	ENSMUST00000217518.2	2468	8	-142	602	38	-602	multi-exon	FALSE	canonical	3	179	junction_3	24.8160580006954	16	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGTCTCCTAGGCAATT	NA	False	NA	NA	False	NA	NA	NA	56325965	56396963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897
56870	chr17	+	554	3	FSM	ENSMUSG00000023984.18	ENSMUST00000146105.8	599	3	30	15	6	-15	multi-exon	FALSE	canonical	3	27	junction_2	122	60	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATTTCAAAAGTCCATA	NA	False	NA	NA	False	NA	NA	NA	47922543	47961199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47922618_47923887_47924043_47960874
56871	chr10	-	2510	5	Intergenic	novelGene_3542	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	33	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCCCCTCCTCCTTCTC	3690	False	NA	NA	False	NA	NA	NA	120366509	120359239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_120359326_120359403_120359472_120360121_120360189_120363519_120363638_120364338
56872	chr17	+	2216	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	55	6	-4	-6	multi-exon	FALSE	canonical	3	110	junction_2	14.7461859475595	54	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCTCCTGCCCTTCCC	NA	False	NA	NA	False	NA	NA	NA	28426806	28447576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
56873	chr13	-	847	8	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2680.40651805669	120	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4750	False	NA	NA	False	NA	NA	NA	58550331	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540072_58544016_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
56874	chr6	-	1092	6	FSM	ENSMUSG00000001158.14	ENSMUST00000131674.2	822	6	-12	-258	-12	4	multi-exon	FALSE	canonical	3	170	junction_5	727.529518301491	41	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTTGTTTTGTTTTGAG	7665	False	NA	NA	False	NA	NA	NA	86661485	86652128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661206
56875	chr8	-	1638	10	NIC	ENSMUSG00000038000.11	novel	2722	12	NA	NA	15	-4	intron_retention	FALSE	canonical	3	32	junction_6	57.9516614233656	1	31	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGCAGGAGGAGAGAGATTC	NA	False	NA	NA	False	NA	NA	NA	106427701	106424793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426528_106426635_106426793_106426913_106426991_106427078_106427173_106427334_106427472_106427551
56876	chr2	+	3612	14	FSM	ENSMUSG00000026796.17	ENSMUST00000028135.15	3714	14	93	9	93	-9	multi-exon	TRUE	canonical	3	292	junction_12	30.0169577319103	211	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCTCATTTCCTCATGT	8950	False	NA	NA	False	NA	NA	NA	32766218	32815257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32766417_32795780_32795912_32799860_32799990_32801352_32801459_32802431_32802600_32809004_32809121_32809507_32809613_32809714_32809878_32810964_32811153_32812080_32812237_32812569_32812687_32812867_32812976_32813058_32813171_32813442
56877	chr11	+	2092	10	Antisense	novelGene_ENSMUSG00000010025.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTAACGACAAAGTGCG	9862	False	NA	NA	False	NA	NA	NA	61136616	61157995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_61137147_61139686_61139895_61141758_61141869_61144449_61144617_61147564_61147671_61149552_61149685_61153044_61153251_61155067_61155156_61155887_61156126_61157688
56878	chr10	+	1009	5	NNC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	5	0	intron_retention	FALSE	non_canonical	0	0	junction_3	3117.31390783796	2	36	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTGTGTCCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	80662531	80665124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80662740_80664070_80664217_80664294_80664444_80664544_80664631_80664704
56879	chr5	-	2829	2	Antisense	novelGene_ENSMUSG00000029267.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108219728	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_108208730_108217027
56880	chr1	-	245	1	ISM	ENSMUSG00000025920.20	ENSMUST00000162751.8	3030	14	290242	146	146331	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTCCGTTTCTGTATGA	NA	False	NA	NA	False	NA	NA	NA	16299288	16299043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16299000_16299300
56881	chr9	+	2571	6	NNC	ENSMUSG00000057982.9	novel	1766	5	NA	NA	4	1005	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	62.806369103778	1	126	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTTGCTAAATTAT	744	False	NA	NA	False	NA	NA	NA	22137013	22152396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837_22150515_22151121
56882	chr5	+	1350	9	NIC	ENSMUSG00000013495.16	novel	3956	11	NA	NA	-13	-15	combination_of_known_splicesites	FALSE	canonical	2	5	junction_6	41.6066025409429	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTTGCATCTGACACTA	NA	False	NA	NA	False	NA	NA	NA	108777684	108792967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790904_108791070_108792033_108792113_108792422
56884	chr5	+	642	4	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	162	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10647.6501006873	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697843	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115698984_115700504_115700626_115701341
56886	chr3	+	1736	8	Antisense	novelGene_ENSMUSG00000027984.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	102	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCGGAGCGTCGTGGGC	NA	False	NA	NA	False	NA	NA	NA	131027067	131065701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_131027939_131029196_131029307_131034581_131034654_131036163_131036251_131038804_131038938_131042065_131042222_131043450_131043579_131065522
56887	chr14	-	3616	19	ISM	ENSMUSG00000022105.7	ENSMUST00000022701.7	4656	27	47329	18	9214	-18	3prime_fragment	FALSE	canonical	3	21	junction_3	7.92012594986522	19	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTGTTCAGAGCCTTACT	9311	False	NA	NA	False	NA	NA	NA	73515933	73432959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_73434725_73435971_73436022_73436621_73436765_73440264_73440296_73443183_73443348_73443449_73443564_73444654_73444760_73449043_73449190_73450423_73450570_73454103_73454220_73499968_73500166_73501732_73501810_73501889_73501922_73502012_73502070_73502955_73503073_73506550_73506639_73510072_73510151_73511076_73511187_73515853
56888	chrX	-	889	7	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6005.39401057268	5	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTGGTTTGCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	101232926	101228549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230159_101230954_101231059_101231427_101231609_101231899_101231978_101232903
56889	chr5	-	1155	7	ISM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	-25	45670	4	-8	5prime_fragment	FALSE	canonical	3	68	junction_3	365.317061681433	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAGAACTGAAGTCATTA	NA	False	NA	NA	False	NA	NA	NA	135378893	135366227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
56890	chr6	-	2347	2	Antisense	novelGene_ENSMUSG00000029781.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGTCTTAACATTTAT	NA	False	NA	NA	False	NA	NA	NA	56814335	56811792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_56813922_56814117
56891	chr17	+	1352	1	FSM	ENSMUSG00000043346.10	ENSMUST00000057074.10	747	1	-35	-570	-35	570	mono-exon	FALSE	NA	NA	NA	NA	NA	994	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAATAGCCA	NA	False	NA	NA	False	NA	NA	NA	91544203	91545555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_91544200_91545600
56892	chr7	+	1748	15	NNC	ENSMUSG00000015149.15	novel	1828	15	NA	NA	-17	-46	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	28.5372116539019	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTGCTTATTAGAAACAA	NA	False	NA	NA	False	NA	NA	NA	28466223	28488039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487156_28487254_28487341
56893	chr4	+	3700	1	Antisense	novelGene_ENSMUSG00000008575.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	45	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTCAAATCAACCCCCACC	NA	False	NA	NA	False	NA	NA	NA	82208413	82212113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_82208400_82212100
56894	chr6	-	2576	13	NNC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	13	-4	intron_retention	TRUE	non_canonical	0	0	junction_1	26.775169882229	31	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTGCTGTGGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	87649162	87605409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87605575_87605982_87606199_87606310_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841_87648914_87649108
56895	chr4	-	1579	8	NNC	ENSMUSG00000028617.11	novel	1755	8	NA	NA	173	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	72.3266400238726	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATTCTGCTTTTGAATT	NA	False	NA	NA	False	NA	NA	NA	107110556	107090715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_107091182_107092996_107093082_107096274_107096391_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
56897	chr1	+	2319	3	ISM	ENSMUSG00000066877.12	ENSMUST00000086421.9	2772	5	87803	11	-15	-11	3prime_fragment	FALSE	canonical	3	156	junction_2	13.5	53	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATTATGACAAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	43572713	43609664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_43572954_43593020_43593743_43608307
56898	chr5	-	2454	9	NNC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	21	1073	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	98.8075781506662	1	108	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTTTTACCATTGAATG	NA	False	NA	NA	False	NA	NA	NA	74226388	74161386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74162792_74163340_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
56899	chr5	-	2952	24	Antisense	novelGene_ENSMUSG00000099047.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	145	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCGAGTGTCACTGAAGC	NA	False	NA	NA	False	NA	NA	NA	115737173	115718600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115718635_115719058_115719184_115719542_115719593_115719832_115719942_115720335_115720495_115721454_115721602_115723857_115723953_115725845_115725919_115726035_115726193_115726990_115727178_115727253_115727385_115728362_115728481_115729030_115729125_115730121_115730236_115730365_115730562_115731633_115731788_115732087_115732274_115733050_115733138_115733353_115733494_115734912_115735052_115735136_115735315_115735432_115735502_115736757_115736921_115737126
56900	chr4	-	1986	2	FSM	ENSMUSG00000028629.10	ENSMUST00000030375.9	1996	2	8	2	8	-2	multi-exon	FALSE	canonical	3	95	junction_1	0	291	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGACTTGATGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	120782194	120778394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120779894_120781707
56901	chr8	-	2259	4	FSM	ENSMUSG00000092260.8	ENSMUST00000130458.8	2291	4	16	16	16	-16	multi-exon	FALSE	canonical	3	15	junction_3	1.24721912892465	39	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTCTAAGAATACAGACAA	9688	False	NA	NA	False	NA	NA	NA	70202596	70194304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70196261_70196841_70196903_70197110_70197238_70202481
56904	chr3	-	4166	1	FSM	ENSMUSG00000103115.2	ENSMUST00000193595.2	1290	1	442	-3318	442	3318	mono-exon	FALSE	NA	NA	NA	NA	NA	13	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGACCTTAGCACTCAGGA	6782	False	NA	NA	False	NA	NA	NA	88434220	88430054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88430100_88434200
56905	chrX	+	1542	1	FSM	ENSMUSG00000048040.9	ENSMUST00000058119.9	1532	1	-10	0	-10	0	mono-exon	FALSE	NA	NA	NA	NA	NA	504	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTAGGTCCATTATTT	NA	False	NA	NA	False	NA	NA	NA	134894562	134896104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134894600_134896100
56906	chr2	-	3068	11	NNC	ENSMUSG00000009621.19	novel	5221	28	NA	NA	-3500	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	19.0672494083441	43	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGTTAGCCTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	27172391	27152115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_27154224_27157241_27157397_27158910_27159035_27160139_27160228_27161786_27161904_27163699_27163753_27165011_27165087_27167227_27167356_27168608_27168631_27171894_27172002_27172300
56907	chr17	+	1312	11	NNC	ENSMUSG00000055817.19	novel	1723	14	NA	NA	49	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	339.266281849523	13	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACAGCCTTTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84013668	84100300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_84013715_84015827_84015896_84022042_84022137_84070362_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
56908	chr14	-	1120	9	ISM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	-65	2287	0	-193	5prime_fragment	FALSE	canonical	3	94	junction_8	114.757284627164	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGACACCTCAGAAAAGG	3758	False	NA	NA	False	NA	NA	NA	54891138	54881904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
56909	chr5	-	1722	6	NNC	ENSMUSG00000037936.16	novel	2367	12	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	247.813962479922	5	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACACTGGCTTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	125418128	125354155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125354937_125375663_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
56910	chr4	+	1471	1	Intergenic	novelGene_1796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAGAGGGGGAGGGAGAG	NA	False	NA	NA	False	NA	NA	NA	11152414	11153885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_11152400_11153900
56911	chr7	+	1514	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	239	26	12	-6	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	73	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTGAATAAATGTTTGTA	2024	False	NA	NA	False	NA	NA	NA	3696612	3703997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
56913	chr19	+	1624	6	NNC	ENSMUSG00000071653.10	novel	500	5	NA	NA	-5	964	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1582.86734756896	9	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGACAACCTTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	8866257	8869209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774_8868252_8868447
56914	chrX	+	2965	3	FSM	ENSMUSG00000081044.9	ENSMUST00000121565.8	2997	3	26	6	3	-6	multi-exon	FALSE	canonical	2	7	junction_1	0	17	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACACACAGTGATTCCAA	NA	False	NA	NA	False	NA	NA	NA	93012290	93019070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_93013537_93015408_93015640_93017582
56915	chr2	+	3036	7	FSM	ENSMUSG00000028640.12	ENSMUST00000099058.10	2985	7	-57	6	-39	6	multi-exon	FALSE	canonical	3	62	junction_1	218.277091992927	235	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGAAAGTCTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	172392644	172400533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172393142_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
56916	chr2	+	1827	13	Fusion	ENSMUSG00000027605.19_ENSMUSG00000085010.2	novel	646	3	NA	NA	-5302	-2215	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGGGCTCGGGGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	155405167	155434660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_155405642_155406681_155406867_155408719_155408804_155409611_155409808_155413438_155413508_155414845_155414921_155415013_155415096_155419441_155419559_155420208_155420351_155420633_155420712_155423811_155423952_155429359_155429499_155434614
56917	chr6	-	1774	6	NIC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	13	-1	intron_retention	FALSE	canonical	3	465	junction_3	29.312113536898	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACATGTTACAGTCAAAAG	2039	False	NA	NA	False	NA	NA	NA	83031410	83028265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593
56918	chr11	+	1142	1	ISM	ENSMUSG00000052563.14	ENSMUST00000117859.8	3410	4	5572	14	5570	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	353	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGGATTCTTATGTGTC	NA	False	NA	NA	False	NA	NA	NA	51547352	51548494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_51547400_51548500
56919	chr12	-	1856	1	NIC	ENSMUSG00000047832.10	novel	2425	2	NA	NA	7261	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTATTAAAAGTATCCAG	9987	False	NA	NA	False	NA	NA	NA	112785733	112783877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_112783900_112785700
56920	chr6	-	1671	5	NNC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	-2441	-19	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_4	469.571812931739	93	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCTTGAGACTCTCCAG	3668	False	NA	NA	False	NA	NA	NA	82684787	82623700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82683088_82683236_82684707
56922	chr7	+	1078	10	FSM	ENSMUSG00000003423.16	ENSMUST00000210139.2	1077	10	-9	8	-9	-2	multi-exon	FALSE	canonical	3	233	junction_1	50.5151242478703	608	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCCCAGCTCCAGACAAT	NA	False	NA	NA	False	NA	NA	NA	44803717	44809481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
56923	chr18	+	1161	6	NNC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-11	374	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_4	410.57588823505	2685	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTCTTTTTACTGTC	NA	False	NA	NA	False	NA	NA	NA	57506952	57522681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57521897_57522095_57522291
56924	chr7	-	1754	5	NNC	ENSMUSG00000030800.11	novel	1852	6	NA	NA	-7	-113	intron_retention	FALSE	canonical	0	0	junction_4	13.1244047484067	136	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTGTCTGTGAGAT	NA	False	NA	NA	False	NA	NA	NA	127529283	127525000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528943
56925	chr12	+	2893	5	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	47	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	77.0211010048545	1	167	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	30634471	30641218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_30634562_30635468_30635555_30637198_30637254_30638472_30638567_30638650
56928	chr19	-	1795	7	ISM	ENSMUSG00000034616.18	ENSMUST00000113852.6	2705	14	3484	24	4	-24	3prime_fragment	FALSE	canonical	1	4	junction_2	1.46249406456535	18	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGAAATAAAAGACATTTT	5834	False	NA	NA	False	NA	NA	NA	4315724	4311747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4312661_4313574_4313846_4313935_4314137_4314341_4314489_4315130_4315178_4315319_4315449_4315637
56929	chr13	-	1112	4	FSM	ENSMUSG00000061474.12	ENSMUST00000109333.8	701	4	-417	6	-417	-6	multi-exon	FALSE	canonical	3	1082	junction_3	81.5693297481079	6241	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATGTCCCTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100881584	100872468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100881037
56930	chr11	-	1297	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-120	1	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	66.4646940529749	356	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCATTGATTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	113600472	113588996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
56932	chr5	-	2645	5	NNC	ENSMUSG00000042190.13	novel	2882	3	NA	NA	-11314	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.67423461417477	56	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTTGACGTCTTGCTTG	5630	False	NA	NA	False	NA	NA	NA	113799801	113750423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113751056_113751458_113753002_113754588_113754678_113788281_113788463_113799601
56933	chr9	-	1156	5	NNC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	-505	-6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	53.4058751449688	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAACCTACTTGGCTCCT	9549	False	NA	NA	False	NA	NA	NA	110452895	110450208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110452818
56935	chr12	-	1509	8	Antisense	novelGene_ENSMUSG00000021134.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	77	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCACTTAGCAGCTCGGA	NA	False	NA	NA	False	NA	NA	NA	80997271	80992310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_80992512_80993379_80993487_80994077_80994142_80994259_80994369_80994568_80994638_80995866_80995932_80996265_80996377_80996488
56936	chr7	+	1995	10	FSM	ENSMUSG00000030555.17	ENSMUST00000126093.8	1991	10	-17	13	8	-10	multi-exon	TRUE	canonical	1	3	junction_1	24.6671671620895	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGCTAGCAGCAGTT	NA	False	NA	NA	False	NA	NA	NA	67297180	67376311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_67297594_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
56937	chr4	+	888	2	NNC	ENSMUSG00000050188.9	novel	943	2	NA	NA	92	-42	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATTTGTTTCTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	125990544	125992332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125990722_125991621
56938	chr4	+	1114	1	Intergenic	novelGene_1949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTCCTCAGAGGCAGGG	NA	False	NA	NA	False	NA	NA	NA	125993565	125994679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_125993600_125994700
56939	chr2	-	2173	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-36	3	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.40870359029762	88	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87327473	87319427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_87320426_87321167_87321750_87322478_87322789_87327190
56940	chr6	-	2033	10	Antisense	novelGene_ENSMUSG00000029816.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTGCCTTCTCTGATGC	9199	False	NA	NA	False	NA	NA	NA	49033706	49019912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_49019980_49020926_49021074_49022237_49022415_49024229_49024385_49024667_49025036_49027343_49027440_49027954_49028061_49028749_49028957_49032550_49032649_49033094
56941	chr15	+	1678	1	FSM	ENSMUSG00000037085.9	ENSMUST00000036937.9	4454	1	-4	2780	-4	-2780	mono-exon	FALSE	NA	NA	NA	NA	NA	87	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATTTATTTGCATATAG	NA	False	NA	NA	False	NA	NA	NA	58744518	58746196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_58744500_58746200
56942	chr13	-	2244	1	ISM	ENSMUSG00000021460.18	ENSMUST00000119311.8	2627	4	20350	16	3642	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	17	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGTCCATCTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	53063340	53061096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_53061100_53063300
56943	chr9	+	1115	5	NNC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	6505	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1069.8801334729	3	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAGGATTTGAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	64195393	64212076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64195530_64201194_64201415_64201604_64201669_64208323_64208531_64211588
56944	chrX	-	4227	1	Intergenic	novelGene_3978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTAGTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	92803149	92798922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_92798900_92803100
56945	chr12	-	871	5	NNC	ENSMUSG00000020652.18	novel	1683	5	NA	NA	5	-877	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	30.7164451068153	1	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACCTAAATGCCTACGCG	NA	False	NA	NA	False	NA	NA	NA	4283933	4266568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4266779_4267207_4267323_4281445_4281683_4283530_4283658_4283751
56946	chr2	-	1341	2	Intergenic	novelGene_2783	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	162	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATGGCTTATGTGTGGG	NA	False	NA	NA	False	NA	NA	NA	166338050	166334149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_166335201_166337760
56947	chr19	-	2056	19	FSM	ENSMUSG00000025041.18	ENSMUST00000235596.2	2788	19	-21	753	-21	427	multi-exon	FALSE	canonical	2	6	junction_16	45.187572037748	272	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGATCGCACCACATGGC	7171	False	NA	NA	False	NA	NA	NA	46950768	46877019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46897928_46897988_46912700_46912775_46939284_46939405_46950710
56948	chr2	-	1226	4	NNC	ENSMUSG00000095362.8	novel	310	3	NA	NA	5	1009	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	302.910694576618	7	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACGTTAACATTAGATTGC	NA	False	NA	NA	False	NA	NA	NA	177482106	177475012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177475661_177475730_177476105_177476312_177476440_177482029
56949	chr15	-	2063	2	NNC	ENSMUSG00000022195.8	novel	1971	3	NA	NA	51	-2524	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	13	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATTTGTAAATGTTCA	-17	True	NA	NA	False	NA	NA	NA	12824646	12822513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_12823793_12823862
56950	chr17	-	1388	4	FSM	ENSMUSG00000015478.14	ENSMUST00000174475.8	850	4	-342	-196	-28	-27	multi-exon	FALSE	canonical	3	1022	junction_3	37.7211994624891	1693	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGGTGAAACACGT	767	False	NA	NA	False	NA	NA	NA	34822692	34820091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34820963_34821058_34821172_34821264_34821284_34822307
56951	chr7	+	629	6	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6896.10961049779	26	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12657009_12659422_12659529_12659663_12659793_12660322_12660422_12660498
56953	chr9	+	2660	7	FSM	ENSMUSG00000058192.17	ENSMUST00000140668.8	2661	7	-36	37	-36	-37	multi-exon	FALSE	canonical	2	6	junction_4	12.0369800568452	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAACTATTAAACATTCTA	6	True	NA	NA	False	NA	NA	NA	20492784	20506453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20500752_20500855_20502108_20502181_20502634_20502718_20504456
56954	chr4	-	1326	3	FSM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	-63	26	-63	-26	multi-exon	FALSE	canonical	3	159	junction_2	16.5	907	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTCTAGCCCGTGGA	NA	False	NA	NA	False	NA	NA	NA	108264221	108257612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108258195_108260397_108260660_108263739
56955	chr18	+	2129	2	NIC	ENSMUSG00000024581.14	novel	826	8	NA	NA	3277	59	intron_retention	FALSE	canonical	3	235	junction_1	0	7	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCATTGTATCTACTACC	NA	False	NA	NA	False	NA	NA	NA	63126323	63130176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_63128164_63129887
56956	chr9	+	1795	6	FSM	ENSMUSG00000010067.14	ENSMUST00000093786.9	1787	6	-15	7	-15	-3	multi-exon	FALSE	canonical	1	1	junction_1	27.6723688902848	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTTTGGACTCTAT	NA	False	NA	NA	False	NA	NA	NA	107428738	107439459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107429046_107431336_107431444_107434651_107434757_107434968_107435267_107435385_107435502_107438597
56957	chr12	+	1056	7	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	36	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1146.26762678801	21	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATCTATGTTGACTGAC	NA	False	NA	NA	False	NA	NA	NA	87313519	87320763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319428_87320446
56958	chr4	+	1979	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16166	-5	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	96	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGTTTGCTTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	109075515	109111763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
56961	chr11	+	3837	8	ISM	ENSMUSG00000018398.19	ENSMUST00000108987.8	4436	10	14851	20	2546	-20	3prime_fragment	FALSE	canonical	0	0	junction_1	36.5161412450518	5	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTGCATTTATTTTGA	NA	False	NA	NA	False	NA	NA	NA	53425423	53434902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_53425456_53425775_53425963_53426774_53426937_53427478_53427576_53427980_53428150_53428313_53428447_53428551_53428743_53432036
56962	chr10	+	1906	9	NNC	ENSMUSG00000040054.18	novel	2455	13	NA	NA	12575	-128	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	127.545028813357	1	81	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATGAGAAGGCTAAGAACA	NA	False	NA	NA	False	NA	NA	NA	127944823	127952498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127944901_127946623_127947218_127948450_127948637_127949328_127949551_127950202_127950653_127950893_127950955_127951907_127952039_127952174_127952277_127952415
56963	chr4	-	3525	6	NNC	ENSMUSG00000044700.16	novel	3620	6	NA	NA	36	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	171.327055656718	45	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGTACCGCGTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	149822419	149809326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149811888_149812356_149812709_149813992_149814170_149815519_149815715_149816292_149816401_149822287
56964	chr6	+	1280	10	NIC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	76.8776485040104	347	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGCAGGGTGTCATCTTC	9440	False	NA	NA	False	NA	NA	NA	83772145	83779534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775464_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
56965	chr2	+	1549	12	ISM	ENSMUSG00000033268.9	ENSMUST00000099461.4	5267	33	17536	3182	17536	-3182	internal_fragment	FALSE	canonical	0	0	junction_1	0.899954085146515	2	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGTGCCAGATACCCAAA	2138	False	NA	NA	False	NA	NA	NA	122163688	122175271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_122163718_122163882_122163977_122164183_122164360_122166316_122166387_122166770_122166897_122167732_122167912_122168069_122168301_122168797_122168898_122169105_122169156_122170555_122170684_122174545_122174700_122175059
56967	chr16	-	2218	5	NIC	ENSMUSG00000022661.15	novel	2347	6	NA	NA	9	8	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	11.6270159542335	38	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTCTCTATGCG	NA	False	NA	NA	False	NA	NA	NA	45229361	45202489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45229218
56969	chr6	+	1515	9	FSM	ENSMUSG00000029848.12	ENSMUST00000114999.8	1455	9	-58	-2	-58	0	multi-exon	FALSE	canonical	1	14	junction_3	19.2272592950738	214	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGGTGTCCTGGCAGT	NA	False	NA	NA	False	NA	NA	NA	34897836	34916279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34897990_34904653_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
56970	chr16	+	1370	8	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-24	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	185.468848806345	1	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTTGTTATCTGAA	NA	False	NA	NA	False	NA	NA	NA	48104125	48114609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111428_48111517_48111678_48113273_48113470_48114061
56971	chr17	-	1107	8	NNC	ENSMUSG00000024097.12	novel	1991	9	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	934.710628581741	1	24	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	80514712	80508740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80510119_80510174_80511550_80511664_80511741_80511817_80512403_80512511_80512690_80512868_80513276_80513458_80514603
56974	chr17	+	1609	2	NIC	ENSMUSG00000034345.15	novel	879	3	NA	NA	-19	-16	intron_retention	FALSE	canonical	3	1081	junction_1	0	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTGGTTAAATTATC	1815	False	NA	NA	False	NA	NA	NA	6130185	6135391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_6131150_6134746
56975	chr4	-	1626	9	NNC	ENSMUSG00000028494.13	novel	1888	8	NA	NA	-8	-141	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	194.707472892028	20	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGCTCCTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	86588231	86574942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86575423_86575477_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
56976	chr7	+	1952	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	53	10	8	-10	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGCAGTAGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	144468924	144474861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
56977	chr7	+	1034	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	-9	3	-9	-3	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	868	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCATTTTATTGCTATT	NA	False	NA	NA	False	NA	NA	NA	109302887	109311393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
56978	chr16	+	2343	10	NIC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	8	-65	intron_retention	FALSE	canonical	3	393	junction_9	37.2170809052928	3	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTGCTGAGATGTAC	NA	False	NA	NA	False	NA	NA	NA	18631058	18647140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645857_18646385
56979	chr14	-	1562	5	FSM	ENSMUSG00000022223.10	ENSMUST00000227268.2	909	5	-48	-605	0	-6	multi-exon	FALSE	canonical	3	22	junction_2	68.2069461272091	883	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGATCACTGGCTTCCGC	NA	False	NA	NA	False	NA	NA	NA	56137668	56134745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_56135470_56135699_56135935_56136640_56136763_56137103_56137187_56137270
56980	chr10	+	3648	7	NNC	ENSMUSG00000020024.8	novel	1692	10	NA	NA	10302	144	intron_retention	FALSE	canonical	0	0	junction_4	110.341389433984	5	74	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTTGTGTTTAATTTTC	9985	False	NA	NA	False	NA	NA	NA	94586247	94626199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_94586266_94586371_94586522_94602303_94604839_94606806_94606937_94622605_94622710_94624621_94624699_94625565
56981	chr2	+	2726	10	Antisense	novelGene_ENSMUSG00000037376.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	152	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACGTGCTGCACGCCGCT	NA	False	NA	NA	False	NA	NA	NA	132646144	132657945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_132647531_132648628_132648721_132648822_132648919_132650124_132650204_132650577_132650939_132651751_132651870_132652293_132652428_132652907_132653019_132653967_132654095_132657723
56982	chr11	-	1329	8	FSM	ENSMUSG00000020766.5	ENSMUST00000021114.5	1406	8	10	67	10	-67	multi-exon	FALSE	canonical	3	761	junction_4	62.9907670591006	892	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGGTAGCCACCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	115903535	115899349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115899541_115899628_115899792_115899873_115900025_115900746_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
56984	chr18	-	1868	14	ISM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	251	7	153	-7	3prime_fragment	FALSE	canonical	3	500	junction_2	37.214236634439	2	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGTACTTTATTAGTTA	NA	False	NA	NA	False	NA	NA	NA	38087818	38070031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734
56985	chr9	+	1635	2	Antisense	novelGene_ENSMUSG00000119432.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAGCCCGGTTCACCGCA	NA	False	NA	NA	False	NA	NA	NA	88403105	88404941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_88403769_88403969
56986	chr11	-	1153	6	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8388.86127194865	1	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	6448	False	NA	NA	False	NA	NA	NA	69812035	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808158_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
56987	chr5	-	1211	9	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	80.9582261107542	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATATTTGTTTTCTCATC	5312	False	NA	NA	False	NA	NA	NA	143314968	143302247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143302588_143305985_143306046_143306151_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
56992	chr6	+	1161	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	163	-1	-17	1	multi-exon	FALSE	canonical	3	32	junction_1	71.6054001687955	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGGTGTCATCTTCCAT	9467	False	NA	NA	False	NA	NA	NA	83772172	83779537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
56993	chr7	-	1417	7	FSM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	0	-1	0	1	multi-exon	FALSE	canonical	3	125	junction_6	42.0135560133737	899	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCATCCTGTCTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	140461782	140443581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
56994	chr3	+	2933	1	Antisense	novelGene_ENSMUSG00000027984.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCGGAGCGTCGTGGGC	NA	False	NA	NA	False	NA	NA	NA	131062768	131065701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_131062800_131065700
56995	chr18	-	1437	9	Antisense	novelGene_ENSMUSG00000009535.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	62	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCGACACATCACCTCT	NA	False	NA	NA	False	NA	NA	NA	68454928	68439197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_68439276_68440722_68440858_68442390_68442515_68444677_68444761_68446774_68446913_68447087_68447190_68451055_68451180_68452186_68452308_68454396
56996	chr13	-	2651	5	FSM	ENSMUSG00000055313.16	ENSMUST00000239246.2	2642	5	-18	9	-4	-9	multi-exon	FALSE	canonical	1	2	junction_2	3.20156211871642	20	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAACCTACCATTTCCT	NA	False	NA	NA	False	NA	NA	NA	21625232	21606030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_21607795_21612437_21612549_21617560_21617713_21618520_21618842_21624929
56997	chr15	-	1775	5	FSM	ENSMUSG00000022634.10	ENSMUST00000133736.2	1870	5	92	3	-35	-3	multi-exon	TRUE	canonical	3	44	junction_2	48.2875501552937	104	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACAGTTTTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	93234724	93182164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_93183504_93184290_93184444_93215419_93215490_93234220_93234347_93234637
56998	chr12	-	1520	10	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_8	78.5509192408354	95	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7672	False	NA	NA	False	NA	NA	NA	110807361	110774231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807179
56999	chr16	-	2080	9	NIC	ENSMUSG00000022843.18	novel	3757	20	NA	NA	-540	-2	intron_retention	FALSE	canonical	3	159	junction_8	39.1102208508211	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAACACCTAATTAGCC	NA	False	NA	NA	False	NA	NA	NA	20528416	20521749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526667_20526826_20526942_20527043_20527217_20527383_20528066_20528319
57000	chr3	+	2834	3	NIC	ENSMUSG00000068744.13	novel	1014	5	NA	NA	-17	-25	intron_retention	FALSE	canonical	3	438	junction_2	33	1	151	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGAATTAAAAAAATTTTT	7092	False	NA	NA	False	NA	NA	NA	108291214	108295470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291748_108292285_108292725_108293608
57002	chr6	+	1882	11	NIC	ENSMUSG00000030347.7	novel	550	3	NA	NA	2	-2440	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	34.7442081504242	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTGCTCAGAAAATTATA	NA	False	NA	NA	False	NA	NA	NA	126916993	126944190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_126917274_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842
57003	chr5	-	1581	1	Genic_Genomic	ENSMUSG00000029394.12	novel	NA	NA	NA	NA	4765	1508	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGGGTTTCTCTGTGTA	NA	False	NA	-71	True	NA	NA	NA	124483552	124481971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_124482000_124483600
57004	chr4	+	2168	9	NNC	ENSMUSG00000029070.10	novel	2203	10	NA	NA	39	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.507497751349	72	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGGACCTGCTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	155924221	155928551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155924354_155925349_155925666_155925901_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
57005	chrX	-	1161	1	Antisense	novelGene_ENSMUSG00000051257.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTCTTCTTCTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	138238905	138237744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_138237700_138238900
57006	chr11	-	2240	10	NNC	ENSMUSG00000018537.17	novel	2347	10	NA	NA	49	-31	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	67.6857298453031	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTTTGTAATAAATGCTG	NA	False	NA	NA	False	NA	NA	NA	97590358	97579679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590321
57007	chr11	-	1307	10	NNC	ENSMUSG00000017176.18	novel	1399	9	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	177.92056765608	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	100331889	100320179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100320403_100320467_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
57008	chr9	+	2908	11	FSM	ENSMUSG00000041608.9	ENSMUST00000047687.9	3453	11	14	531	14	-531	multi-exon	FALSE	canonical	3	4	junction_7	3.21869538788622	26	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTCTTATTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	120368897	120396862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120368950_120369717_120369770_120373024_120373153_120383134_120383253_120384710_120384862_120386457_120386618_120387401_120387636_120389546_120389820_120389986_120390098_120390964_120391103_120395371
57009	chr17	+	1361	11	NIC	ENSMUSG00000098090.9	novel	1344	12	NA	NA	71	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	50.1274375965898	3	16	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTAGTAAAGTGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	95059993	95082549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_95060048_95060130_95060304_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
57011	chr1	+	1449	8	NIC	ENSMUSG00000026096.15	novel	1723	9	NA	NA	32	-30	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	73.1785627135183	5	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGATGAAAATAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	53352863	53365472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_53353018_53354014_53354259_53359101_53359456_53360238_53360370_53360463_53360544_53360654_53360727_53362325_53362430_53365162
57012	chr14	-	2151	2	NNC	ENSMUSG00000022114.6	novel	2087	2	NA	NA	1643	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	175	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCTTGTTTTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	106132610	106129380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_106131236_106132314
57013	chr18	+	950	3	FSM	ENSMUSG00000024581.14	ENSMUST00000137849.3	624	3	39	-365	6	365	multi-exon	FALSE	canonical	3	228	junction_1	10	2	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTATATTTCACCCTT	NA	False	NA	NA	False	NA	NA	NA	63110985	63116461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_63111096_63113536_63113605_63115689
57016	chr2	-	1303	6	FSM	ENSMUSG00000027327.17	ENSMUST00000103188.10	1241	6	-54	-8	7	7	multi-exon	FALSE	canonical	3	656	junction_1	33.1336686770421	2708	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTAGCGGGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	131001994	130988236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995513_130995631_131001872
57017	chr17	-	1424	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234579.2	1445	7	13	8	3	0	multi-exon	FALSE	canonical	3	14	junction_6	253.310580118557	1646	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	25105300	25101592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104838_25105252
57020	chr10	+	1681	6	FSM	ENSMUSG00000006731.11	ENSMUST00000219523.2	1497	6	-200	16	-47	-15	multi-exon	FALSE	canonical	3	48	junction_1	9.6	16	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATTTAGAACACATTTT	307	False	NA	NA	False	NA	NA	NA	127001046	127004376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569
57021	chr14	-	1215	10	NNC	ENSMUSG00000006289.15	novel	1308	11	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	245.426159974849	39	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTTGTGTTTTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	51162312	51153138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154878_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
57023	chr7	+	1798	7	FSM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	28	2	-4	-2	multi-exon	TRUE	canonical	3	65	junction_6	10.2794292967395	218	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGTCTACCTTTTACC	1912	False	NA	NA	False	NA	NA	NA	127399803	127402972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
57025	chr18	-	3763	10	FSM	ENSMUSG00000053846.6	ENSMUST00000066532.5	3787	10	3	21	2	-21	multi-exon	TRUE	canonical	1	2	junction_4	1.89215404065849	10	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAAAGTATACAGC	NA	False	NA	NA	False	NA	NA	NA	75094331	75072413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_75074410_75076410_75076516_75078874_75079094_75080076_75080198_75081043_75081287_75082128_75082351_75087248_75087361_75088489_75088670_75090268_75090451_75093948
57027	chr16	-	883	3	Antisense	novelGene_ENSMUSG00000116939.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	41	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGGACCCGGCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	93817231	93814602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_93814648_93815226_93815315_93816481
57028	chr9	-	1687	13	NNC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	-3	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	123.480767733279	2	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGTGTTTCTTACTGTT	9811	False	NA	NA	False	NA	NA	NA	57672400	57658016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57659987_57660563_57660684_57660783_57660879_57661784_57661952_57662534_57662639_57665560_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
57029	chrX	+	1589	11	FSM	ENSMUSG00000039382.13	ENSMUST00000043045.10	1609	11	10	10	0	-5	multi-exon	FALSE	canonical	3	94	junction_1	40.4807361593141	455	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACCTCAAGGGTGGGGCG	4016	False	NA	NA	False	NA	NA	NA	7588465	7594435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
57030	chr14	-	2465	14	NNC	ENSMUSG00000021831.10	novel	4418	16	NA	NA	138	-1798	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	237.678640383764	1	101	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTACTATAAGCCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	45555891	45522341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45523546_45525189_45525324_45525432_45525522_45529818_45529889_45530387_45530635_45531760_45531874_45536502_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
57031	chr9	+	2116	11	FSM	ENSMUSG00000032192.10	ENSMUST00000215875.2	2105	11	42	-53	37	48	multi-exon	TRUE	canonical	3	15	junction_6	3.38230690505755	48	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTCCTGTGTATTACAA	417	False	NA	NA	False	NA	NA	NA	75221459	75253206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_75221666_75234414_75234552_75239154_75239197_75240090_75240168_75241450_75241584_75242932_75243077_75244552_75244645_75247469_75247519_75250789_75250887_75251762_75251930_75252234
57032	chr3	-	2432	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	5	13	0	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	88	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTATTAAAACTAATTTG	NA	False	NA	NA	False	NA	NA	NA	110158309	110155877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_110155900_110158300
57033	chr8	-	1324	8	NIC	ENSMUSG00000052926.17	novel	1532	11	NA	NA	-985	0	intron_retention	FALSE	canonical	3	35	junction_3	496.002551013848	2	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	6433	False	NA	NA	False	NA	NA	NA	85694490	85684295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85684494_85684594_85684719_85686404_85686493_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291
57034	chr9	+	4693	19	NNC	ENSMUSG00000032584.13	novel	4722	19	NA	NA	-13	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	1.29099444873581	9	55	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCGAGCACAAGTAATGG	NA	False	NA	NA	False	NA	NA	NA	107784092	107797569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107785580_107788718_107788908_107788992_107789122_107789276_107789448_107789768_107789932_107790274_107790441_107790547_107790685_107791418_107791581_107791674_107791769_107791907_107792127_107792208_107792356_107792435_107792602_107792902_107793131_107793485_107793567_107793750_107793933_107794013_107794124_107794397_107794564_107794962_107795100_107797010
57036	chr9	-	1362	8	NNC	ENSMUSG00000032306.15	novel	1780	8	NA	NA	20	-301	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	88.2087042768687	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGGACAAGGTTTCTGT	8971	False	NA	NA	False	NA	NA	NA	57460026	57451839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57452125_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
57037	chr19	+	1912	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	62	6	6	1	multi-exon	FALSE	canonical	3	86	junction_8	8.77530154238379	145	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGTGTAAGTGC	NA	False	NA	NA	False	NA	NA	NA	4905219	4910940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
57040	chrX	+	1209	12	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	248.759833062845	67	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGGAGTGCCTGCATTA	233	False	NA	NA	False	NA	NA	NA	73356672	73363738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359169_73361278_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
57041	chr5	+	639	2	Antisense	novelGene_ENSMUSG00000085042.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGCCTGGTTCATTAC	753	False	NA	NA	False	NA	NA	NA	135041898	135042743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135042321_135042526
57042	chr2	-	2105	11	NNC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	1	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	135.358376172293	2	60	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTCTCTAAGAGTATTTC	NA	False	NA	NA	False	NA	NA	NA	5900129	5875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5876833_5878553_5878631_5881170_5881373_5881651_5881813_5884403_5884512_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
57044	chr16	+	1404	1	ISM	ENSMUSG00000037972.8	ENSMUST00000089011.6	2872	2	7240	12	7240	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	33	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATTCCCAATGTACAGT	NA	False	NA	NA	False	NA	NA	NA	10891433	10892837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_10891400_10892800
57046	chr1	-	1527	2	NNC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	12	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTGTATATGTGTGT	7900	False	NA	NA	False	NA	NA	NA	179373810	179355619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_179356807_179373470
57047	chr3	-	1740	11	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-12	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	321.423847901801	1	88	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTTATCAAATGTACCTG	NA	False	NA	NA	False	NA	NA	NA	157630700	157599900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614607_157619216_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
57048	chr5	-	2273	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	542	13	-18	-10	multi-exon	FALSE	canonical	3	50	junction_3	8.99382504215469	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTCAAGTGATGTACTT	NA	False	NA	NA	False	NA	NA	NA	33815218	33810572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
57050	chr18	+	1627	1	Antisense	novelGene_ENSMUSG00000044201.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACAGACAGGAGAGATGG	NA	False	NA	NA	False	NA	NA	NA	34882008	34883635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34882000_34883600
57051	chr7	+	1445	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	85	2	54	-2	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGTTTAGGCTCATTCA	NA	False	NA	NA	False	NA	NA	NA	121732348	121748265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
57052	chr3	-	1654	1	Genic_Genomic	ENSMUSG00000028158.15	novel	NA	NA	NA	NA	-1410	-2462	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTATGGCAGCGAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	137852139	137850485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_137850500_137852100
57053	chr11	-	1845	2	Antisense	novelGene_ENSMUSG00000045980.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGACAGAGGATAAACTG	3920	False	NA	NA	False	NA	NA	NA	115112733	115110748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_115110758_115110897
57054	chr15	+	1856	11	NNC	ENSMUSG00000022369.14	novel	463	2	NA	NA	9909	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	54.361843235858	2	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	NA	NA	NA	55450084	55489819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55450330_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
57055	chr10	+	2253	18	FSM	ENSMUSG00000044005.14	ENSMUST00000044776.13	2573	18	318	2	27	-2	multi-exon	FALSE	canonical	3	75	junction_3	13.3766309680488	107	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATAATTTTTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	128030643	128045806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128030777_128035050_128035151_128035505_128035628_128036041_128036172_128036754_128036835_128037074_128037239_128037427_128037487_128039691_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
57056	chr2	-	1303	8	NIC	ENSMUSG00000026766.17	novel	1342	8	NA	NA	-5	-9	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	208.37515226541	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTATGAAGGCTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	50186734	50169901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186689
57058	chr7	-	1660	5	NNC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	40.591717135396	231	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGTGGCTTTGTGGCATC	NA	False	NA	NA	False	NA	NA	NA	127534601	127531810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561_127533800_127534043
57059	chr7	-	1504	11	NNC	ENSMUSG00000003438.18	novel	1515	11	NA	NA	-9	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	704.516919598103	159	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCAGCCTAGCTGCCGT	2682	False	NA	NA	False	NA	NA	NA	28011471	28004952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28005456_28005847_28005982_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
57060	chr17	+	1279	11	NNC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	1290	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	113.03579079212	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	57074023	57076841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57074289_57074636_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076601_57076663_57076735
57061	chr7	-	506	1	Antisense	novelGene_ENSMUSG00000030987.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGCTGCCCCTTGCTCA	NA	False	NA	NA	False	NA	NA	NA	102077072	102076566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_102076600_102077100
57062	chr7	+	1887	3	FSM	ENSMUSG00000043964.15	ENSMUST00000121504.2	2141	3	112	142	112	-142	multi-exon	FALSE	canonical	0	0	junction_2	1	9	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCTATGGCTATGAATG	NA	False	NA	NA	False	NA	NA	NA	127369098	127374180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127369389_127369905_127370051_127372728
57063	chr2	+	2980	1	Intergenic	novelGene_2629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGCATCTCAAAAGATCTG	5096	False	NA	NA	False	NA	NA	NA	53112705	53115685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_53112700_53115700
57064	chr2	-	2868	9	ISM	ENSMUSG00000026819.16	ENSMUST00000113307.9	2541	10	2414	-547	389	-23	3prime_fragment	FALSE	canonical	3	77	junction_4	7.21001907070987	32	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTAATAAAGTCGCTTCAA	9228	False	NA	NA	False	NA	NA	NA	32311603	32304524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_32306335_32306420_32306572_32307103_32307272_32307357_32307466_32307735_32307889_32309059_32309219_32310316_32310429_32311314_32311403_32311484
57065	chr12	+	1556	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	42	4	14	0	multi-exon	FALSE	canonical	3	205	junction_6	16.3656564409681	894	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	84408783	84420566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
57066	chr5	-	2217	7	NNC	ENSMUSG00000001687.16	novel	2001	7	NA	NA	8	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	168.720100231781	212	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAATAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	148489591	148441472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703_148448813_148488762_148488861_148488966_148489236_148489540
57067	chr16	+	559	5	FSM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	79	3	79	-3	multi-exon	FALSE	canonical	0	0	junction_1	320.427351360648	106	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTAACTGTGTGACTCCT	NA	False	NA	NA	False	NA	NA	NA	90017720	90023214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022151_90023037
57068	chrX	-	1970	3	Genic_Genomic	ENSMUSG00000096966.3	novel	2298	1	NA	NA	-2984	1252	multi-exon	FALSE	canonical	0	0	junction_1	15	10	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTCACCACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	72445326	72438792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_72439976_72441721_72442387_72445204
57069	chr7	+	1676	14	FSM	ENSMUSG00000030659.15	ENSMUST00000032895.15	1685	14	5	4	5	-4	multi-exon	FALSE	canonical	3	41	junction_2	11.132340009308	97	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAGAACACACGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	116103608	116139815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
57070	chr5	+	2799	19	NNC	ENSMUSG00000029482.5	novel	3239	18	NA	NA	43	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	29.7400258204742	3	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGGAATAAATCTGTGCC	NA	False	NA	NA	False	NA	NA	NA	125552920	125594436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279_125593481_125593839
57071	chr7	+	1569	12	NNC	ENSMUSG00000004056.16	novel	4544	14	NA	NA	-41	40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	153.645454276509	1	76	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTATTTTGCCTTTTGG	NA	False	NA	NA	False	NA	NA	NA	27308045	27337635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328886_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
57072	chr10	-	1695	10	NNC	ENSMUSG00000000901.18	novel	1793	9	NA	NA	0	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	78.8572706590995	1	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAAAAAGCCAAGACTGT	5083	False	NA	NA	False	NA	NA	NA	75768309	75759098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75759325_75759792_75759950_75761253_75761335_75761389_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
57074	chr11	-	413	1	Intergenic	novelGene_2462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAAAAGGACCTTAACTC	NA	False	NA	NA	False	NA	NA	NA	95892179	95891766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_95891800_95892200
57075	chr3	+	1015	1	Intergenic	novelGene_3186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTCAGTCTTTAGTAT	NA	False	NA	NA	False	NA	NA	NA	127385294	127386309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_127385300_127386300
57076	chr15	+	2405	4	Antisense	novelGene_ENSMUSG00000115127.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	5.18544972870135	39	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCAGTGAACCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	36670255	36681722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36670723_36673470_36673619_36679828_36679873_36679976
57077	chr8	+	2391	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	129	-1	28	1	multi-exon	FALSE	canonical	3	97	junction_2	2	2	86	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGTTGTCACTAACTGT	NA	False	NA	NA	False	NA	NA	NA	96360209	96371689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_96360412_96364437_96364672_96369734
57078	chr10	+	2438	10	NNC	ENSMUSG00000020034.8	novel	2725	10	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.03992421393285	33	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGTAATCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	84412760	84450219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_84412881_84420627_84420920_84422967_84423104_84425747_84425869_84426951_84427173_84430511_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
57080	chr9	-	2612	17	Fusion	ENSMUSG00000100281.2_ENSMUSG00000103638.2	novel	948	2	NA	NA	4283	-1609	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	126	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCCCCGCGGCCTAAGCCC	NA	False	NA	NA	False	NA	NA	NA	99182445	99125512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_99125540_99128315_99128419_99136307_99136445_99144595_99144688_99144876_99145003_99145681_99145861_99157628_99157808_99159448_99159497_99159987_99160208_99163078_99163156_99171248_99171345_99173570_99173750_99178084_99178225_99178326_99178496_99179629_99179739_99180558_99180623_99181778
57081	chr8	+	3118	6	NIC	ENSMUSG00000034796.15	novel	2398	15	NA	NA	-49	1	intron_retention	FALSE	canonical	2	3	junction_1	7.56306816047562	1	91	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTGTGCCTTTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	123853206	123861922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123853474_123853559_123854532_123855316_123855451_123856281_123857046_123860347_123860585_123861178
57082	chr2	-	107	1	Intergenic	novelGene_2679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1706	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCTATCTGTATTACA	NA	False	NA	NA	False	NA	NA	NA	108954184	108954077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_108954100_108954200
57083	chr4	-	713	5	NIC	ENSMUSG00000028964.15	novel	908	7	NA	NA	3	-4	intron_retention	FALSE	canonical	3	170	junction_2	2381.02061887334	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTTTGTGTCTGGGGT	NA	False	NA	NA	False	NA	NA	NA	150994322	150981593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_150981929_150985464_150985552_150991496_150991599_150992774_150992881_150994239
57084	chr17	-	2571	1	Genic_Genomic	ENSMUSG00000060475.14	novel	NA	NA	NA	NA	9818	1600	mono-exon	FALSE	NA	NA	NA	NA	NA	12	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGTTGGGCCAGACCCT	NA	False	NA	NA	False	NA	NA	NA	13192542	13189971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_13190000_13192500
57085	chr5	-	1701	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	-278	20	-278	-20	multi-exon	FALSE	canonical	3	45	junction_2	12	290	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTTTATTTTTCTGGC	3623	False	NA	NA	False	NA	NA	NA	140317931	140313448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_140314536_140316734_140317025_140317607
57087	chr1	-	592	3	NNC	ENSMUSG00000026035.16	novel	1363	7	NA	NA	2860	-5	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	92.5	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCACATGTGAGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	58477267	58470160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58470490_58473489_58473609_58477123
57088	chr5	+	1111	1	NIC	ENSMUSG00000028970.10	novel	3181	22	NA	NA	7828	-6527	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGGCATGACAAGAGATT	NA	False	NA	NA	False	NA	NA	NA	8856013	8857124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_8856000_8857100
57089	chr11	-	999	5	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	88	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8914.73520007745	2	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACACATTTGTTAAAAATC	6359	False	NA	NA	False	NA	NA	NA	69812124	69807597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808076_69808742_69808848_69809976_69810163_69811166_69811261_69811988
57090	chr8	+	1503	1	Antisense	novelGene_ENSMUSG00000031586.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTTTTTCCTCATTCCTC	NA	False	NA	NA	False	NA	NA	NA	34293966	34295469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_34294000_34295500
57091	chr1	-	1870	9	Genic_Genomic	ENSMUSG00000102840.2	novel	1624	1	NA	NA	-11037	-1149	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCAACCGTCGCGGGCTT	766	False	NA	NA	False	NA	NA	NA	191565142	191553630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_191553852_191554256_191554475_191554601_191554845_191557594_191557678_191558334_191558460_191559259_191559482_191561503_191561630_191563255_191563728_191564982
57092	chr4	-	1064	8	NIC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	29	-1100	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	147.201236685133	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTGTTTTTTTTTCCC	34	False	NA	NA	False	NA	NA	NA	58987090	58966538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58984743_58984860_58987037
57093	chr6	+	996	3	Intergenic	novelGene_4140	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.5	45	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTCAGTGTTTTAGAAATA	NA	False	NA	NA	False	NA	NA	NA	35333523	35354062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_35333634_35349228_35349338_35353285
57096	chr17	-	457	1	NIC	ENSMUSG00000024194.17	novel	2748	5	NA	NA	720	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCCTGATGCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	27157412	27156955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27157000_27157400
57097	chr4	-	2300	7	ISM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	4478	243	4152	-243	3prime_fragment	FALSE	canonical	3	50	junction_4	11.4709778717132	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTCCTTCTCTAGTAAAA	4758	False	NA	NA	False	NA	NA	NA	3570375	3549283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320
57098	chr7	-	1369	5	NNC	ENSMUSG00000031078.16	novel	2913	17	NA	NA	20	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	467.907309197025	1	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCATTTACTGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	144024462	143989478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143990581_144017064_144017114_144017648_144017736_144019690_144019785_144024425
57099	chr2	-	1148	9	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	27	0	intron_retention	FALSE	canonical	3	3857	junction_2	298.157152354258	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9614	False	NA	NA	False	NA	NA	NA	10085211	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
57100	chr8	-	1255	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	29	-287	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_4	963.598925325723	2	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGACTTCATGAGGAGAACAA	NA	False	NA	NA	False	NA	NA	NA	108315061	108307299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311589_108312336_108312430_108313256_108313349_108314910
57101	chr19	+	1400	3	Intergenic	novelGene_1270	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATTTCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	41513771	41515390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41514013_41514152_41514491_41514569
57102	chr7	-	1016	8	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	1903	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	940.910175937998	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCTATTGTGTCAAGTT	NA	False	NA	-67	True	NA	NA	NA	113873358	113863848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873159_113873278
57103	chr14	+	856	7	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	-8	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	2089.29429872066	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTGTATTTTGTGTTGT	109	False	NA	NA	False	NA	NA	NA	101891421	101933552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101928007_101928084_101932594_101932654_101933337
57106	chr2	+	2842	10	NNC	ENSMUSG00000041921.17	novel	2770	9	NA	NA	-2	-40	intron_retention	FALSE	canonical	0	0	junction_6	29.9109790322327	11	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCGCCCAAGTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	71283692	71355495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71283743_71331122_71331214_71337128_71337287_71340084_71341905_71342469_71342513_71345980_71346145_71352854_71352975_71354145_71354194_71355060_71355140_71355226
57108	chr3	-	3002	14	ISM	ENSMUSG00000028064.18	ENSMUST00000029700.12	3205	15	899	5	2	-2	3prime_fragment	TRUE	canonical	0	0	junction_13	15.4291662638534	34	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGCTTATGGCGTGCTG	7585	False	NA	NA	False	NA	NA	NA	88362147	88343270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986_88357160_88357294_88357420_88357817_88357935_88358651_88358758_88358994_88359094_88359326_88359390_88360277_88360439_88361985
57111	chr2	-	1742	13	NNC	ENSMUSG00000039648.15	novel	1876	13	NA	NA	-314	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	43.4421710118431	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCAGCTTCTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	30096173	30075139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30096088
57113	chr15	-	2216	11	Antisense	novelGene_ENSMUSG00000116145.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.9	1	102	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATGCGCTTGCGCACCGG	NA	False	NA	56	True	NA	NA	NA	76479947	76460609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76460695_76471955_76472060_76473266_76473416_76477429_76477510_76477629_76477830_76477916_76478246_76478346_76478636_76478725_76478952_76479044_76479465_76479534_76479649_76479727
57115	chr9	+	700	5	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-155	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8256.85082219607	135	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAAACCCTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	64080655	64085793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082252_64085002_64085087_64085178_64085300_64085504
57117	chr5	+	1741	6	Antisense	novelGene_ENSMUSG00000098624.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACCCTCAGACTCGGACT	75	False	NA	NA	False	NA	NA	NA	137294728	137297847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_137295493_137295599_137296250_137296489_137296567_137296650_137296715_137296987_137297146_137297819
57119	chr17	+	1807	12	NIC	ENSMUSG00000006705.14	novel	2170	12	NA	NA	7	99	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	45.8695599382163	1	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCCGGTGGGCTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	31783714	31824314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_31783863_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726_31823953_31824037
57121	chr17	+	1982	1	NIC	ENSMUSG00000002365.11	novel	3331	18	NA	NA	88616	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGTACAGCAGATTCCCA	4266	False	NA	NA	False	NA	NA	NA	5980242	5982224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_5980200_5982200
57122	chr6	+	1220	3	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	2271	2	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684552	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688558_122690767
57123	chr11	-	2063	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	117	4	117	-4	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	570	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTCTGGCCTCTGCTT	1440	False	NA	NA	False	NA	NA	NA	98478077	98472085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
57124	chr17	+	1510	1	Intergenic	novelGene_260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCCGGGCGTGGTGGCGCT	NA	False	NA	NA	False	NA	NA	NA	47927778	47929288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_47927800_47929300
57126	chr6	-	1746	13	FSM	ENSMUSG00000010796.12	ENSMUST00000010940.11	1736	13	-11	1	-7	-1	multi-exon	FALSE	canonical	1	1	junction_4	5.42307313450798	70	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAACTGTGCTCATTTGT	6	True	NA	NA	False	NA	NA	NA	18109067	18050963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_18051403_18054526_18054641_18055433_18055540_18071963_18072074_18073760_18073818_18074824_18074901_18075759_18075885_18076503_18076639_18077151_18077264_18103498_18103611_18104774_18104898_18108401_18108502_18108930
57127	chr11	+	2604	9	FSM	ENSMUSG00000038976.13	ENSMUST00000107748.2	3095	9	485	6	485	-6	multi-exon	FALSE	canonical	3	26	junction_1	8.14612638006556	75	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGCCTCGTCGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	94887374	94897719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_94887494_94888819_94888941_94891032_94891138_94892044_94892181_94892667_94892821_94892904_94892959_94895386_94895617_94895846_94895944_94896130
57128	chr9	+	1459	12	NIC	ENSMUSG00000055720.11	novel	1364	11	NA	NA	10	-2	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	84.997131696865	1045	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTGCCGTGTCCAGTG	NA	False	NA	NA	False	NA	NA	NA	57818278	57837247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57818343_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
57129	chr11	-	2064	1	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACCCTCGTTCTATCTCC	NA	False	NA	NA	False	NA	NA	NA	80276205	80274141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80274100_80276200
57130	chr6	-	2900	7	ISM	ENSMUSG00000030051.11	ENSMUST00000032130.8	1889	11	16	14732	16	6610	5prime_fragment	FALSE	canonical	3	48	junction_1	11.5998084275369	6	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTACCTGTTCTTCAGCCTC	NA	False	NA	NA	False	NA	NA	NA	87649159	87621462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
57131	chr19	-	1226	4	NNC	ENSMUSG00000024742.16	novel	2373	3	NA	NA	27	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	391.50337021396	100	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAAAATTATAAAAGT	1956	False	NA	NA	False	NA	NA	NA	10181506	10176523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177234_10178329_10178462_10181051_10181388_10181458
57132	chr1	+	1243	10	NNC	ENSMUSG00000018189.13	novel	1696	11	NA	NA	11	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	522.776585191697	3	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGGCTAAACTCCATTC	NA	False	NA	NA	False	NA	NA	NA	143653029	143682671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670145_143670421_143670549_143672499_143672564_143674128_143674232_143675657_143675773_143677872_143677972_143682421
57133	chr7	+	1245	7	NNC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	7	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	125.29886494121	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCCTCGCCCCGACAAC	NA	False	NA	NA	False	NA	NA	NA	140795794	140798526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140795854_140796633_140796765_140796912_140797335_140797547_140797626_140797798_140797931_140798002_140798082_140798182
57134	chr2	-	1701	16	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.394330939628	2	67	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGGTTTCTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	164699637	164681440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164681749_164682033_164682093_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688780_164693468_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
57135	chr9	+	2093	17	NNC	ENSMUSG00000003402.15	novel	1983	18	NA	NA	33	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	342.888192418462	1	108	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAATGTGACTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	21914134	21925496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914385_21914694_21914826_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919541_21919670_21921452_21921538_21921819_21921899_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
57136	chr8	+	1491	12	NNC	ENSMUSG00000001482.16	novel	3127	12	NA	NA	-12	-10	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_11	88.9284232560654	6	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGTCTAGTTGTTATC	NA	False	NA	NA	False	NA	NA	NA	124169712	124187244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124187085
57137	chr6	-	3551	2	Antisense	novelGene_ENSMUSG00000013736.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	82	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCTTAGAAACGTGGCG	NA	False	NA	NA	False	NA	NA	NA	106749860	106746196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_106746659_106746771
57138	chr16	+	3059	8	NNC	ENSMUSG00000022503.11	novel	3296	9	NA	NA	-646	22924	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATCGATGGGGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	10238453	10265216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_10240758_10242066_10242122_10243622_10243756_10244867_10244996_10245248_10245337_10246522_10246664_10264790_10264872_10265087
57139	chr7	+	1622	3	NIC	ENSMUSG00000078765.12	novel	883	6	NA	NA	0	-1	intron_retention	FALSE	canonical	3	497	junction_1	21	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	30262770	30264783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30264033_30264127_30264224_30264519
57142	chr13	+	676	3	FSM	ENSMUSG00000050002.15	ENSMUST00000226010.2	1898	3	18	1204	13	-1204	multi-exon	FALSE	canonical	3	188	junction_1	4.5	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATCTTCTAAAAGCTCAA	NA	False	NA	NA	False	NA	NA	NA	58305480	58308540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_58305551_58307690_58307722_58307965
57143	chr18	+	3467	3	Antisense	novelGene_ENSMUSG00000052928.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	2	16	64	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGTTGAAATGGCAATTT	NA	False	NA	NA	False	NA	NA	NA	75598283	75606625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_75598509_75602199_75602302_75603485
57144	chr5	+	1089	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-20	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7997.5735834203	3	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697575	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699164_115699305_115699391_115699578_115700484_115700626_115701341
57145	chr12	-	2143	5	FSM	ENSMUSG00000056770.16	ENSMUST00000148119.8	3056	5	1143	-230	1143	-5	multi-exon	FALSE	canonical	3	471	junction_1	36.8069286955595	84	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGTTTTTGTTTGTTCC	NA	False	NA	NA	False	NA	NA	NA	108080063	108072694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577
57146	chr9	+	2474	7	ISM	ENSMUSG00000033577.19	ENSMUST00000113266.8	7632	31	70532	2335	1880	792	3prime_fragment	FALSE	canonical	3	56	junction_1	9.88966913276453	45	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCACTTTTGATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	80195442	80216676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_80195499_80197147_80197227_80199638_80199800_80206427_80206532_80207816_80207949_80214241_80214461_80214953
57147	chr2	+	1719	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173878.8	936	4	32	-815	18	0	multi-exon	FALSE	canonical	0	0	junction_1	369.719713657071	385	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAAGGTGGTTTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	172863723	172876521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172864041_172864584_172864709_172865119_172865175_172875298
57148	chr8	+	2186	10	FSM	ENSMUSG00000015016.9	ENSMUST00000015160.6	2206	10	0	20	0	-20	multi-exon	FALSE	canonical	2	11	junction_1	8.97458689169274	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGTGTAGTGCTTCTCTG	9534	False	NA	NA	False	NA	NA	NA	123502243	123544599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123502330_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
57149	chr7	-	1921	6	FSM	ENSMUSG00000055723.7	ENSMUST00000069449.7	2275	6	354	0	337	0	multi-exon	FALSE	canonical	3	204	junction_1	27.4779911929529	106	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACGCTTGACGGCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	113716662	113646016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_113647487_113649535_113649655_113657774_113657884_113658161_113658265_113659566_113659655_113716630
57150	chr11	+	1091	2	FSM	ENSMUSG00000020397.16	ENSMUST00000152119.2	381	2	32	-742	-4	73	multi-exon	FALSE	canonical	3	22	junction_1	0	354	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAAATGTTTAGATTTA	NA	False	NA	NA	False	NA	NA	NA	46327783	46332427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_46327837_46331389
57152	chr2	-	2769	17	NNC	ENSMUSG00000006800.15	novel	3927	21	NA	NA	166	-3906	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	290.650455874406	6	88	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAACATTTACCCAGCATG	NA	False	NA	NA	False	NA	NA	NA	165997039	165920640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924497_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974713_165996997
57153	chr15	+	1586	7	NNC	ENSMUSG00000009585.19	novel	1217	8	NA	NA	25	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	266.916965865167	1	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGTTTTTAAATCCCCA	NA	False	NA	NA	False	NA	NA	NA	79782048	79792230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79782151_79782299_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
57154	chr13	-	2468	1	Intergenic	novelGene_1360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATCAGATCCCATTACA	NA	False	NA	NA	False	NA	NA	NA	47250082	47247614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_47247600_47250100
57155	chr19	+	1797	10	NIC	ENSMUSG00000010110.18	novel	2251	11	NA	NA	5	0	intron_retention	FALSE	canonical	3	140	junction_1	19.8033542488684	2	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6653	False	NA	NA	False	NA	NA	NA	8718880	8733006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
57156	chr9	-	2607	1	NIC	ENSMUSG00000110803.2	novel	1387	4	NA	NA	75	-112139	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTGAACCAGT	NA	False	NA	NA	False	NA	NA	NA	59848285	59845678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_59845700_59848300
57158	chr2	-	2395	3	NIC	ENSMUSG00000007659.19	novel	2568	3	NA	NA	5	-13	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	154.5	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGACTCTGTGAACCA	NA	False	NA	NA	False	NA	NA	NA	152672581	152622604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152624203_152671346_152672023_152672460
57159	chr9	-	566	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	9928	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTACAGCGACGGAGGGCA	9623	False	NA	NA	False	NA	NA	NA	57439710	57428641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57428698_57436237_57436354_57437521_57437644_57438949_57439075_57439563
57161	chrUn_JH584304v1	+	1331	8	Intergenic	novelGene_4629	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTGTGCTCCTGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	52211	58651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_52396_53539_53769_54334_54478_54718_54863_55109_55249_55464_55704_56986_57150_58561
57162	chr13	-	3121	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-10	-315	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	5	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACGTAGTTGAGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	74210390	74184933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
57163	chrY	+	731	2	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	172	-22780	intron_retention	FALSE	canonical	0	0	junction_1	0	10	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTATGTGCCACCGACCC	4297	False	NA	NA	False	NA	NA	NA	90796351	90804887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrY_+_90796989_90804793
57164	chr11	+	595	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	18	-30828	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	136.699670811601	78	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCTTGCTGACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	4587764	4602557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599776_4602484
57165	chr5	+	2628	7	FSM	ENSMUSG00000029385.15	ENSMUST00000121127.2	2570	7	-60	2	-60	-2	multi-exon	FALSE	canonical	3	45	junction_2	9.62057979310787	44	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACATGTATTCCTATTTCA	NA	False	NA	NA	False	NA	NA	NA	93416112	93424081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
57166	chr9	+	2887	16	FSM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	99	3	0	0	multi-exon	FALSE	canonical	3	21	junction_3	5.20085463062456	201	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGATGCTGTGTTCCATT	7	False	NA	NA	False	NA	NA	NA	44045957	44054021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
57168	chr17	+	1979	5	NNC	ENSMUSG00000042099.17	novel	2652	11	NA	NA	2	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	146.471840297035	3	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACTAAGTTCGTATTGTG	NA	False	NA	NA	False	NA	NA	NA	34029498	34041883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34029540_34035159_34035625_34038559_34038971_34040742_34041181_34041259
57170	chr11	+	1461	5	NNC	ENSMUSG00000069844.13	novel	2412	6	NA	NA	-2	-429	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	126.153428411597	8	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGACAAGCATGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	66944598	66955728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_66944692_66946556_66946755_66947340_66947398_66949152_66949269_66954731
57171	chr13	+	1653	1	Intergenic	novelGene_1401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAGATTAAAATGTTGGGA	NA	False	NA	NA	False	NA	NA	NA	62458039	62459692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62458000_62459700
57172	chr10	+	3617	12	NNC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	6	-72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	33.7531143344244	1	146	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTTTTTTAAGTGATTGT	NA	False	NA	NA	False	NA	NA	NA	103203649	103255164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_103204015_103224757_103225200_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
57173	chr14	-	1684	12	NIC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	8	134	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	61.0282416672129	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCTATAAAATAACACTCAA	NA	False	NA	NA	False	NA	NA	NA	58127725	58073576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_58074104_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
57174	chr11	-	2344	2	FSM	ENSMUSG00000045140.9	ENSMUST00000067058.3	2675	2	334	-3	334	3	multi-exon	FALSE	canonical	3	9	junction_1	0	40	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTCTGCATGTATTT	NA	False	NA	NA	False	NA	NA	NA	84770687	84767137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84769339_84770544
57175	chr2	+	1350	11	NIC	ENSMUSG00000041921.17	novel	1321	10	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	24.3969260358759	73	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTGTCCAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	71283684	71355538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_71283743_71331122_71331214_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
57177	chr5	-	3461	14	NNC	ENSMUSG00000055061.6	novel	2735	4	NA	NA	-18320	-1856	intron_retention	TRUE	non_canonical	0	0	junction_1	0	7	54	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTATTTATCAGGAATAT	6759	False	NA	NA	False	NA	NA	NA	35764427	35740426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_35740477_35741214_35741319_35745501_35745656_35745960_35746196_35746518_35746593_35747035_35747126_35749417_35749555_35751645_35751741_35755656_35755748_35757031_35757217_35758844_35758968_35760262_35760385_35761955_35762074_35762544
57178	chr3	+	1079	6	NNC	ENSMUSG00000015749.13	novel	2890	6	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	752.53597920631	2	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTGTAGTTTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	95836602	95852878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836946_95841200_95841371_95842084_95842170_95845312_95845352_95851618_95851674_95852491
57179	chr10	-	709	1	ISM	ENSMUSG00000057337.14	ENSMUST00000135158.9	6108	4	37014	6	6461	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCCATAAAGTCTGTAGT	NA	False	NA	NA	False	NA	NA	NA	60018068	60017359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_60017400_60018100
57181	chr4	+	2462	9	FSM	ENSMUSG00000040410.15	ENSMUST00000184455.8	2478	9	19	-3	19	0	multi-exon	FALSE	canonical	2	4	junction_4	22.7156333832011	117	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGTTAAGAATCTTT	8	True	NA	NA	False	NA	NA	NA	22357589	22434091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390713_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
57183	chr4	-	1598	3	NNC	ENSMUSG00000028636.15	novel	1443	3	NA	NA	2	-11	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	132	27	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGGAAAGGGCGGGTT	5551	False	NA	NA	False	NA	NA	NA	119279571	119275737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119276491_119278564_119278881_119279042
57185	chr17	+	1251	4	ISM	ENSMUSG00000041130.11	ENSMUST00000234988.2	3285	9	3101	-108	3101	-16	3prime_fragment	FALSE	canonical	3	262	junction_2	129.740767173108	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGCAGTACTGCACATA	2598	False	NA	NA	False	NA	NA	NA	24899216	24900974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24899250_24899597_24899773_24899854_24900006_24900082
57186	chr16	+	2136	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	231	0	52	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	1	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	500	False	NA	NA	False	NA	NA	NA	18066977	18071366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
57187	chr1	-	1793	11	NNC	ENSMUSG00000026193.16	novel	7410	44	NA	NA	3	4296	intron_retention	FALSE	canonical	0	0	junction_1	498.242069680993	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAGGAGGGACATATGCTG	NA	False	NA	NA	False	NA	NA	NA	71692328	71677687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71677740_71679442_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
57188	chr13	-	3289	1	NIC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	18	-7978	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	365	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGGATTCGACATTTTTA	NA	False	NA	NA	False	NA	NA	NA	9046068	9042779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_9042800_9046100
57189	chr17	+	2554	14	FSM	ENSMUSG00000024220.15	ENSMUST00000073534.10	2864	14	308	2	-12	0	multi-exon	FALSE	canonical	3	64	junction_10	10.6092512939298	69	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGGCTCCTCCATCAT	NA	False	NA	NA	False	NA	NA	NA	28396410	28424858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
57190	chr11	-	1180	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	17	combination_of_known_junctions	FALSE	canonical	3	149	junction_5	366.911215418662	1156	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGTTTCCCTAACTTG	NA	False	NA	NA	False	NA	NA	NA	117716673	117706334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716539
57191	chr10	+	2459	14	NNC	ENSMUSG00000020024.8	novel	3639	16	NA	NA	-20494	141	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	62.041120168127	96	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTGTTTGTGTTTAATT	4481	False	NA	NA	False	NA	NA	NA	94555451	94626196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606935_94622605_94622710_94624508_94624699_94625565
57193	chr11	-	2018	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	-71	-1	-71	-1	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	480	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGATTGCATGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	51526794	51514498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
57194	chr1	+	2265	2	Antisense	novelGene_ENSMUSG00000026663.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	15	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGGGGGGGGGGGGAGCA	1453	False	NA	NA	False	NA	NA	NA	170691464	170693911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_170691952_170692133
57195	chr2	+	2087	7	FSM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	163	20	4	-4	multi-exon	FALSE	canonical	3	113	junction_6	10.8269211792745	74	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCACGCTCCTTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	131333846	131367083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
57196	chr1	+	910	9	NNC	ENSMUSG00000053332.14	novel	502	12	NA	NA	3	-2	intron_retention	FALSE	canonical	0	0	junction_5	2044.59224235543	104	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATGAACTGTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	160862744	160866100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863815_160864118_160864423_160864693_160864742_160865059_160865118_160865564_160865608_160865794_160865843_160866026
57198	chr8	-	2099	1	Intergenic	novelGene_1723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATTTTTAACATTTC	NA	False	NA	NA	False	NA	NA	NA	107836124	107834025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_107834000_107836100
57199	chr17	-	3145	11	NNC	ENSMUSG00000117092.2	novel	927	5	NA	NA	-43455	1158	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.79687398208458	4	27	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTCTTTAAGTGATAAAAG	NA	False	NA	NA	False	NA	NA	NA	13660042	13604289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13605836_13606005_13606094_13614285_13614418_13614964_13615101_13616404_13616623_13619533_13619660_13621490_13621721_13622014_13622197_13624366_13624512_13624736_13624791_13659754
57202	chr5	-	979	6	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	69	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	445.615349825385	2	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGGATTCAGTAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	129856168	129842626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129842963_129843482_129843632_129846329_129846449_129847669_129847805_129848539_129848697_129856085
57203	chr2	+	3199	17	FSM	ENSMUSG00000070880.11	ENSMUST00000094934.11	3355	17	140	16	-14	-14	multi-exon	FALSE	canonical	0	0	junction_11	3.61420807370024	14	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTCTCCATGAAGAAT	NA	False	NA	NA	False	NA	NA	NA	70392525	70432342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_70392677_70394111_70394255_70397529_70397593_70403049_70403209_70404412_70404656_70409454_70409546_70416177_70416291_70417466_70417583_70417666_70417747_70417977_70418033_70420116_70420234_70421449_70421515_70423775_70423855_70424967_70425118_70427505_70427614_70429952_70430043_70430966
57204	chr3	-	865	1	Intergenic	novelGene_3146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGTCCGCCCTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	88465128	88464263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_88464300_88465100
57206	chr9	+	1299	9	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	50	53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	63.057389535248	1	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGGTTGGGGAGAGAATCC	NA	False	NA	NA	False	NA	NA	NA	108174170	108178823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178421_108178514
57208	chr15	-	1873	9	NNC	ENSMUSG00000022992.18	novel	2324	10	NA	NA	319	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	454.193498825115	2	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAAAGTGTAAAGTGATC	NA	False	NA	NA	False	NA	NA	NA	98431806	98416702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429600_98429780_98431398_98431658_98431785
57209	chr8	-	1465	11	NNC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	51.662849321345	22	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	NA	False	NA	NA	NA	57003886	56984556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003798
57210	chr15	+	2236	4	FSM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	3	2610	2	-2	multi-exon	FALSE	canonical	3	39	junction_1	34.1792659696229	57	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTAGTGTTGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	76594840	76599289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76595128_76597066_76597421_76597600_76598186_76598279
57211	chr2	+	1345	12	NNC	ENSMUSG00000002102.16	novel	1636	12	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	573.338677981367	16	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCGCCACAGTCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	90884630	90889772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886060_90886262_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
57212	chr13	-	1683	4	NNC	ENSMUSG00000114348.2	novel	653	3	NA	NA	5357	-11534	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.69967317119759	26	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTCTCAAATGCCCAGAG	NA	False	NA	NA	False	NA	NA	NA	97957036	97944203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97945392_97945720_97945979_97949820_97950033_97957011
57213	chr14	-	1004	9	NNC	ENSMUSG00000068245.15	novel	1281	8	NA	NA	-5072	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.056275442928	99	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	59607991	59586180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586514_59590195_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
57214	chr11	-	2227	3	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	65	675	intron_retention	FALSE	canonical	3	985	junction_2	75.5	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGCAACCTGTGGCAAC	NA	False	NA	NA	False	NA	NA	NA	117716578	117711790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117713017_117715496_117716459_117716539
57215	chr13	+	3026	17	ISM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	2789	19	-254	-19	3prime_fragment	FALSE	canonical	2	5	junction_3	3.50836055017155	32	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGTGTGCCTGGTGGCT	NA	False	NA	NA	False	NA	NA	NA	55303241	55316553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55303385_55304043_55304308_55304398_55304480_55304586_55304754_55306906_55307031_55307735_55307927_55308061_55308201_55308928_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
57216	chr3	+	1097	7	FSM	ENSMUSG00000048416.16	ENSMUST00000077916.12	1114	7	19	-2	-9	2	multi-exon	FALSE	canonical	3	41	junction_1	4.04145188432738	141	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTGGTTAAATTGGTCA	NA	False	NA	NA	False	NA	NA	NA	67281448	67307333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_67281596_67291883_67292032_67300224_67300309_67301267_67301397_67302584_67302745_67305113_67305244_67307034
57217	chr7	-	1376	7	NNC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	10	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	73.5083139666679	28	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCCTGCTCTGTCTGTCT	6677	False	NA	NA	False	NA	NA	NA	44741628	44732347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737970_44738125_44740864_44741113_44741528
57218	chr11	+	1020	4	ISM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	58	1706	23	-1706	5prime_fragment	FALSE	canonical	3	3867	junction_2	81.4261765172737	3	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTTAGAGGAGCAAGAGG	NA	False	NA	NA	False	NA	NA	NA	97594282	97602620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927
57219	chr10	+	1813	5	Genic_Genomic	ENSMUSG00000020015.11	novel	3242	17	NA	NA	10743	44014	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGGCTGCCCGCCCAGA	1407	False	NA	NA	False	NA	NA	NA	93085627	93146947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_93085971_93090550_93090674_93100741_93101545_93120632_93120847_93146617
57221	chr8	+	2119	6	FSM	ENSMUSG00000031791.9	ENSMUST00000034244.9	2124	6	-17	22	1	-22	multi-exon	FALSE	canonical	3	40	junction_3	8.51821577561874	118	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCTGGTGCGAGTAAA	NA	False	NA	NA	False	NA	NA	NA	73325899	73341104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_73326072_73333406_73333564_73333803_73333989_73335028_73335117_73338543_73338662_73339705
57222	chr18	+	766	2	Genic_Genomic	ENSMUSG00000058625.7	novel	1355	1	NA	NA	-107	148	multi-exon	FALSE	non_canonical	0	0	junction_1	0	120	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	82356479	82358089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_82356959_82357802
57223	chr3	+	2013	6	FSM	ENSMUSG00000015750.16	ENSMUST00000015894.12	2863	6	23	827	23	16	multi-exon	FALSE	canonical	3	313	junction_4	15.0651916682132	2	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGTGGGGGGACTTGGC	NA	False	NA	NA	False	NA	NA	NA	95801303	95804773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
57224	chr19	-	3358	21	FSM	ENSMUSG00000025199.17	ENSMUST00000026217.11	3502	21	130	14	-68	-13	multi-exon	FALSE	canonical	3	185	junction_2	31.5901883501824	140	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTTTAAAATTATTTTGA	NA	False	NA	NA	False	NA	NA	NA	44095789	44061787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
57225	chr3	-	1612	10	Antisense	novelGene_ENSMUSG00000028093.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	83	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCTCCTGACCTCCCACG	NA	False	NA	NA	False	NA	NA	NA	97083834	97066132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_97066670_97073153_97073298_97073401_97073521_97073855_97073933_97075314_97075393_97075768_97075888_97078955_97079033_97081107_97081212_97082940_97083108_97083644
57226	chr14	-	1261	3	FSM	ENSMUSG00000041625.16	ENSMUST00000162164.2	609	3	-26	-626	9	0	multi-exon	TRUE	canonical	3	7	junction_2	16.5	421	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTTGGTCCTTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	123150523	123128271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_123129229_123137887_123137945_123150276
57227	chr5	-	1725	13	NNC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	108.866891202055	2	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794531	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794121_34794438
57230	chr4	-	1911	3	Antisense	novelGene_ENSMUSG00000078502.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGAAACCGCGGAACTT	NA	False	NA	NA	False	NA	NA	NA	145329637	145311758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145311906_145314002_145314099_145327969
57231	chr2	+	767	1	ISM	ENSMUSG00000027624.21	ENSMUST00000103137.10	6490	23	118922	2617	6324	611	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTCTGTGTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	156381750	156382517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_156381800_156382500
57232	chr17	+	1453	3	Antisense	novelGene_ENSMUSG00000047407.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	177	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTAACAAACTCGAGGAAG	9841	False	NA	NA	False	NA	NA	NA	71151219	71156812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_71152266_71153164_71153392_71156632
57233	chrX	+	351	1	Intergenic	novelGene_3958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCCTATTTAACAGCAATA	1865	False	NA	NA	False	NA	NA	NA	73118953	73119304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_73119000_73119300
57234	chr8	+	1767	10	NNC	ENSMUSG00000031808.8	novel	2730	13	NA	NA	191	-758	intron_retention	FALSE	non_canonical	0	0	junction_8	49.5086973279555	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCGTCAGACCTCAGACA	NA	False	NA	NA	False	NA	NA	NA	72032047	72038591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037644_72037985_72038137_72038545
57236	chr11	+	2169	6	ISM	ENSMUSG00000056598.17	ENSMUST00000094140.9	2438	8	5297	58	5246	-58	3prime_fragment	FALSE	canonical	3	20	junction_1	5.30659966456864	23	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGTCCCCTGCCTCTGCC	8718	False	NA	NA	False	NA	NA	NA	60249451	60268046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619
57238	chr2	-	888	4	ISM	ENSMUSG00000009549.15	ENSMUST00000138189.2	765	5	-18	-6	-18	-4	intron_retention	FALSE	canonical	3	1430	junction_1	27.3536509852382	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTACAGGTGGTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	118310147	118306335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858
57239	chr7	+	1602	8	ISM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	5077	3	5077	-3	3prime_fragment	FALSE	canonical	3	61	junction_1	11.5245965886278	212	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTCACTTGTCAAGATTT	4443	False	NA	NA	False	NA	NA	NA	45281988	45288514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
57241	chr17	-	1428	12	NNC	ENSMUSG00000073460.6	novel	2004	19	NA	NA	-4395	-2	at_least_one_novel_splicesite	TRUE	canonical	2	7	junction_8	37.9810740168189	1	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTCTGTACATGGCCAG	NA	False	NA	NA	False	NA	NA	NA	13118866	13107618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113461_13114398_13114485_13116147_13116218_13118419_13118564_13118727
57243	chr7	+	2343	13	ISM	ENSMUSG00000030515.10	ENSMUST00000032728.9	3192	19	16121	8	1987	-8	3prime_fragment	FALSE	canonical	3	56	junction_3	5.15590276608601	52	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAGAGCCTCGGTATGT	NA	False	NA	NA	False	NA	NA	NA	65310766	65341831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711_65325879_65327743_65327907_65332514_65332653_65333555_65333634_65333809_65333911_65336185_65336291_65338626_65338700_65339715_65339831_65340918
57244	chr9	+	1182	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6367.56860485225	3	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084317_64085018_64085087_64085178_64085300_64085504
57245	chr7	-	2693	14	ISM	ENSMUSG00000002602.17	ENSMUST00000002677.11	4265	20	13858	702	-151	-345	3prime_fragment	FALSE	canonical	0	0	junction_11	1.9551176964829	12	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGATTCTAGACTCTGAAA	3366	False	NA	NA	False	NA	NA	NA	25474254	25457399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_25458439_25460175_25460313_25460829_25460990_25462708_25462819_25463367_25463490_25463846_25463940_25465942_25466021_25466217_25466314_25469642_25469735_25470057_25470191_25472523_25472551_25472767_25472919_25473508_25473649_25473939
57246	chr7	-	3046	3	Antisense	novelGene_ENSMUSG00000030779.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	124	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAACGGGCACAAAGACTG	NA	False	NA	NA	False	NA	NA	NA	122600823	122596256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_122596529_122597747_122599500_122599801
57247	chr4	+	1335	4	Antisense	novelGene_ENSMUSG00000028435.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGCCCGGAGCGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	41092721	41098180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41093690_41094777_41094842_41095147_41095272_41098001
57248	chr2	-	1654	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	128.925133313873	2	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGTTTGGGGAT	NA	False	NA	NA	False	NA	NA	NA	73044690	72923542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72924069_72927488_72927612_72929635_72929711_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
57251	chr7	-	1034	6	FSM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	-75	0	-22	0	multi-exon	TRUE	canonical	3	50	junction_1	296.710903068964	68	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5710	False	NA	NA	False	NA	NA	NA	33896108	33884057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33884237_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
57253	chr5	+	897	5	NNC	ENSMUSG00000029198.4	novel	3528	4	NA	NA	166	-2398	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1140.25729004466	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCTTTGGCTATATCTAT	NA	False	NA	NA	False	NA	NA	NA	36622507	36629026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_36622600_36626781_36626945_36627945_36628028_36628399_36628693_36628759
57255	chr15	+	951	9	NNC	ENSMUSG00000056851.15	novel	3222	14	NA	NA	65	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	175.173084048321	2	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTTTTTCTTTGTGA	208	False	NA	NA	False	NA	NA	NA	102387136	102407319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399143_102399239_102406923
57256	chr13	+	1378	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	2	2	2	-2	multi-exon	FALSE	canonical	3	82	junction_2	4.49691252107735	289	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTAATAGAAGTCTGTACA	NA	False	NA	NA	False	NA	NA	NA	55770819	55780222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
57258	chr2	+	3472	1	Intergenic	novelGene_2635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	86	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCACCTCCTTTCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	60201964	60205436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_60202000_60205400
57259	chr6	-	1493	3	FSM	ENSMUSG00000005892.5	ENSMUST00000006046.5	1384	3	-109	0	-109	0	multi-exon	FALSE	canonical	3	80	junction_1	3.5	436	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGCTTTGCTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	92221740	92219041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_92220107_92220652_92220869_92221528
57260	chr1	+	1199	9	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_5	1020.66944177584	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
57261	chr11	+	2847	11	FSM	ENSMUSG00000038188.18	ENSMUST00000042808.13	2887	11	15	25	14	-21	multi-exon	FALSE	canonical	1	3	junction_9	2.37697286480094	27	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATATTTCTTTTAGAAA	NA	False	NA	NA	False	NA	NA	NA	75404380	75417383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75404517_75404830_75404890_75405134_75405237_75405991_75406515_75411119_75411339_75411728_75411858_75412777_75412882_75413004_75413123_75414600_75414723_75414816_75414964_75416195
57262	chr19	-	1680	9	ISM	ENSMUSG00000024695.17	ENSMUST00000038627.9	5531	11	17047	2659	11230	1832	3prime_fragment	FALSE	canonical	3	113	junction_5	14.5166929773967	3	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCTACTACTGCCCTAT	9023	False	NA	NA	False	NA	NA	NA	12756443	12747042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_12747914_12748366_12748467_12752183_12752299_12753358_12753438_12753775_12753827_12754223_12754359_12755305_12755411_12755987_12756025_12756256
57263	chr14	-	1241	4	NNC	ENSMUSG00000015759.12	novel	1538	5	NA	NA	16	-103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	244.671662074344	11	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTGCTGTGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47025852	47013126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47014007_47016345_47016425_47021568_47021638_47025639
57264	chr8	+	3395	20	Fusion	ENSMUSG00000110428.2_ENSMUSG00000031787.9	novel	3777	20	NA	NA	3655	3253	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	12	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCGGAGAGAACAAGGGGAA	1129	False	NA	NA	False	NA	NA	NA	95826519	95864748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_95827083_95828038_95828148_95828641_95828772_95828971_95829204_95829289_95829419_95830036_95830159_95830516_95830654_95832349_95832450_95833087_95833272_95834050_95834164_95834982_95835117_95835204_95835351_95835809_95835984_95836411_95836654_95836759_95836904_95837324_95837390_95853155_95853331_95855815_95855963_95861344_95861491_95864545
57265	chr6	-	2010	5	NNC	ENSMUSG00000068329.13	novel	1108	6	NA	NA	9	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	228.94377038915	3	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTACAGTCAAAAGTGGG	2035	False	NA	NA	False	NA	NA	NA	83031414	83028261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83028819_83029453_83029524_83029678_83030052_83030309_83030505_83030599
57266	chrX	+	2073	4	FSM	ENSMUSG00000043929.17	ENSMUST00000096369.10	3944	4	-30	1901	27	0	multi-exon	FALSE	canonical	3	48	junction_2	6.59966329107444	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	93278562	93297673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020
57267	chr4	-	2115	15	ISM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	3925	6	-1101	-6	3prime_fragment	FALSE	canonical	3	684	junction_5	55.0408475403421	1	88	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGATTTTGCTTGATGG	NA	False	NA	NA	False	NA	NA	NA	155841625	155825103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548
57268	chr1	+	3207	10	FSM	ENSMUSG00000073609.10	ENSMUST00000097633.10	3232	10	6	19	6	-19	multi-exon	FALSE	canonical	3	12	junction_1	12.154357040244	86	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTTGTGGCTCATTAC	NA	False	NA	NA	False	NA	NA	NA	93752967	93780051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
57271	chr6	+	1856	8	FSM	ENSMUSG00000025821.10	ENSMUST00000061890.8	5573	8	445	3272	-7	-3272	multi-exon	TRUE	canonical	3	24	junction_5	6.34388666033558	6	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGCTAAAGCACCAGCG	NA	False	NA	NA	False	NA	NA	NA	47854582	47882147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_47854771_47856933_47857354_47866999_47867127_47867537_47867658_47869788_47869909_47874748_47874863_47875827_47875942_47881494
57272	chr6	-	2071	12	NNC	ENSMUSG00000030353.16	novel	1718	12	NA	NA	379	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28.6590098045136	147	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCTACAAACACAGATATC	1811	False	NA	NA	False	NA	NA	NA	128277322	128201263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128202043_128205523_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128277257
57273	chr2	-	1764	11	NNC	ENSMUSG00000027195.11	novel	1902	11	NA	NA	7	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	220.174112919753	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAATAAAAGATGATGTAAC	NA	False	NA	NA	False	NA	NA	NA	93988231	93863071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988076
57274	chr12	+	2118	4	FSM	ENSMUSG00000051721.7	ENSMUST00000220215.2	2202	4	76	8	-15	-8	multi-exon	FALSE	canonical	2	4	junction_3	5.90668171555645	31	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCTTTAAAAAAAAAGGATT	NA	False	NA	NA	False	NA	NA	NA	4893378	4906959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4906845
57276	chr14	+	949	5	ISM	ENSMUSG00000058571.12	ENSMUST00000078849.12	1668	9	944415	-156	944415	156	3prime_fragment	FALSE	canonical	1	2	junction_2	2.48746859276655	2	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTACCGGGTGCCAGAT	9305	False	NA	NA	False	NA	NA	NA	118107762	118212654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_118107896_118125933_118126078_118188549_118188687_118202110_118202287_118212295
57277	chr17	-	1971	11	NNC	ENSMUSG00000024246.10	novel	2239	11	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	47.3007399519289	228	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGCTTATAGACTCTT	8152	False	NA	NA	False	NA	NA	NA	81372508	81333758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81371345_81371470_81372363
57278	chr4	+	2952	4	NNC	ENSMUSG00000051351.15	novel	4639	3	NA	NA	-12	-1406	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	7.36357401145817	1	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGACACGAATAGACCTAT	NA	False	NA	NA	False	NA	NA	NA	136013402	136019847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_136013793_136014382_136014627_136017273_136017707_136017962
57279	chr2	+	1270	6	FSM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	55	25	55	-25	multi-exon	TRUE	canonical	3	290	junction_5	10.373041983912	1017	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAATTCTGCTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	144441871	144610653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
57281	chr14	-	1160	3	FSM	ENSMUSG00000021917.17	ENSMUST00000226374.2	592	3	-2	-566	0	-2	multi-exon	FALSE	canonical	3	1717	junction_1	35	612	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTACATTTGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	30723326	30721786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30722722_30722800_30722861_30723161
57282	chr15	+	2233	4	NNC	ENSMUSG00000097414.3	novel	2224	3	NA	NA	12	-36	intron_retention	FALSE	non_canonical	0	0	junction_2	10.3708994574027	11	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGACAGAAACCAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	98704917	98713922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98705106_98711122_98711409_98712086_98712745_98712821
57284	chr7	+	2054	6	ISM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	5081	1191	5081	-1191	intron_retention	FALSE	canonical	3	61	junction_1	13.311649033835	1	67	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGACTCCAGCTCAGCT	4447	False	NA	NA	False	NA	NA	NA	45281992	45287326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143
57285	chr16	-	1099	3	NNC	ENSMUSG00000040681.17	novel	261	5	NA	NA	11	643	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3266.5	2	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTGGAAATGCCTGATT	NA	False	NA	NA	False	NA	NA	NA	95928918	95922790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928769
57286	chr16	+	603	1	FSM	ENSMUSG00000046546.4	ENSMUST00000059078.4	3075	1	12	2460	12	-2460	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCTCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	30418552	30419155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_30418600_30419200
57287	chr7	-	802	1	FSM	ENSMUSG00000062758.7	ENSMUST00000085365.6	801	1	49	-50	49	50	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCGCCAACTCCCAAACAC	NA	False	NA	NA	False	NA	NA	NA	131216668	131215866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_131215900_131216700
57288	chr14	+	1351	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	37	4	16	-2	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	232	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCAGTGCGTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	55716251	55727793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
57289	chr5	+	2051	4	Antisense	novelGene_ENSMUSG00000077273.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4.49691252107735	41	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAATATAGTTTACGGT	NA	False	NA	NA	False	NA	NA	NA	38842221	38868613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_38842438_38863808_38865059_38866445_38866602_38868184
57290	chr9	-	1875	1	NIC	ENSMUSG00000032366.16	novel	1714	8	NA	NA	8356	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATCTGGTGGTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	66931751	66929876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_66929900_66931800
57291	chr8	-	1840	1	Intergenic	novelGene_1741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGAGCTGCCTGCCCA	9121	False	NA	NA	False	NA	NA	NA	111412557	111410717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111410700_111412600
57292	chr11	+	1861	6	NNC	ENSMUSG00000020794.14	novel	3815	6	NA	NA	-17	-1869	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	318.585247618279	2	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCAAGTTGTTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	72498091	72575438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72498360_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
57293	chr11	-	1441	5	ISM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	569	2	-160	-1	3prime_fragment	FALSE	canonical	3	250	junction_2	32.8252951243397	184	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGTGGACAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	116733706	116728259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157
57294	chr4	+	1588	3	FSM	ENSMUSG00000039693.12	ENSMUST00000061135.8	1589	3	1	0	1	0	multi-exon	FALSE	canonical	3	23	junction_1	140.5	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	19	False	NA	NA	False	NA	NA	NA	48539935	48561918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_48539998_48552379_48552831_48560843
57296	chr2	+	1574	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110208.8	1521	3	-53	0	-10	0	multi-exon	FALSE	canonical	3	39	junction_2	10	183	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	NA	False	NA	NA	NA	131052306	131055434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131052602_131053182_131053394_131054366
57297	chr9	+	978	1	Intergenic	novelGene_1172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTCCCTCCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	113591001	113591979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_113591000_113592000
57299	chr9	-	1295	5	NNC	ENSMUSG00000000171.6	novel	1231	4	NA	NA	-2	9	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	697.644967014025	3747	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATACATTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	50515114	50507647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50508551_50510060_50510206_50510767_50510821_50511847_50511965_50515037
57300	chr14	-	1892	5	NNC	ENSMUSG00000021835.16	novel	2064	4	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.9394611683287	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGACCTTTCTATCTTAT	6491	False	NA	NA	False	NA	NA	NA	46628000	46620976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_46621696_46621741_46622170_46623171_46623552_46624612_46624738_46627760
57301	chr4	-	4100	8	NNC	ENSMUSG00000040761.17	novel	12299	16	NA	NA	-5117	-7535	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10.5269333868232	14	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTCCCCAGCCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	141220740	141203309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141206701_141208056_141208121_141211031_141211137_141212869_141212984_141214876_141214991_141215303_141215430_141217156_141217309_141220706
57302	chr7	+	2110	6	Antisense	novelGene_ENSMUSG00000074272.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTTTCTTAAAGGAGCT	6225	False	NA	NA	False	NA	NA	NA	25162193	25177028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_25163357_25164890_25164945_25165740_25165863_25171222_25171501_25175768_25176129_25176895
57303	chr5	-	1511	6	FSM	ENSMUSG00000029213.12	ENSMUST00000199767.5	3360	6	9	1840	1	-14	multi-exon	FALSE	canonical	3	10	junction_4	163.112966989139	1001	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGGTCGTCTCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	72325498	72316367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322097_72322198_72322693_72322850_72325421
57304	chr8	+	3358	3	Antisense	novelGene_ENSMUSG00000109982.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	60	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGACCCCAGCCGGGAT	NA	False	NA	NA	False	NA	NA	NA	14111218	14140261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_14114342_14128771_14128917_14140171
57305	chr9	+	2053	4	FSM	ENSMUSG00000084786.10	ENSMUST00000154429.9	2511	4	461	-3	21	1	multi-exon	FALSE	canonical	3	1046	junction_3	4.78423336480244	338	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGCTGTCATACTTGTG	10005	False	NA	NA	False	NA	NA	NA	20554634	20558074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20556190_20556488_20556786_20556917_20556956_20557911
57307	chr10	+	2004	10	NNC	ENSMUSG00000020085.16	novel	1442	10	NA	NA	10524	44664	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	81	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGTTCTCCGGGCCGCGG	NA	False	NA	26	True	NA	NA	NA	61574450	61619703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61575244_61576156_61576215_61576913_61577089_61582411_61582500_61583449_61583551_61585054_61585168_61587457_61587654_61589240_61589348_61593502_61593734_61619561
57311	chr11	-	1232	6	FSM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	-37	0	-37	0	multi-exon	FALSE	canonical	3	38	junction_4	7.4027022093287	207	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCTTCGTGATATCAT	5052	False	NA	NA	False	NA	NA	NA	106205392	106202169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486_106204538_106205243
57312	chr4	-	1847	16	NNC	ENSMUSG00000029053.17	novel	2641	18	NA	NA	4896	31	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	61.7898229664256	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTCTGATGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	155440901	155346525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155346989_155347158_155347242_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374268_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155439110_155439162_155440883
57315	chr17	-	1040	6	NIC	ENSMUSG00000024387.14	novel	883	7	NA	NA	29	0	intron_retention	FALSE	canonical	3	826	junction_1	52.3854941753917	82	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGCTGTCTCCTACTGT	NA	False	NA	NA	False	NA	NA	NA	35340233	35335175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35335402_35336671_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
57317	chr1	-	1195	6	ISM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	8577	9	-1017	-9	intron_retention	FALSE	canonical	3	1294	junction_5	92.8861668926003	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGCTCAGCTTGTAATGT	NA	False	NA	NA	False	NA	NA	NA	171066114	171062430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513
57318	chr13	+	2242	17	Fusion	ENSMUSG00000114388.2_ENSMUSG00000038651.16	novel	2641	29	NA	NA	-2304	-23	multi-exon	FALSE	canonical	3	6	junction_7	9.00498993614096	91	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATAAAATCTTTCAAAGG	NA	False	NA	NA	False	NA	NA	NA	41299967	41332483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_41300150_41302269_41302328_41302410_41302490_41303953_41304003_41306165_41306311_41306906_41306957_41308994_41309122_41310909_41310994_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327290_41327389_41327673_41327774_41327873_41327933_41330358_41330421_41331657
57320	chr12	+	2047	12	NIC	ENSMUSG00000035293.14	novel	6803	15	NA	NA	10	-3515	combination_of_known_splicesites	FALSE	canonical	3	12	junction_10	44.9267539795665	2	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCCTCGTATTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	51395080	51416535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51414557_51414740_51415828
57321	chr2	+	1194	2	NIC	ENSMUSG00000027245.12	novel	1349	3	NA	NA	3	-11	intron_retention	FALSE	canonical	3	4570	junction_1	0	45	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTTCAAATGCAGGCTC	NA	False	NA	NA	False	NA	NA	NA	121287607	121288906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_121288525_121288629
57322	chr3	-	1078	8	FSM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	-14	0	-14	0	multi-exon	FALSE	canonical	3	626	junction_6	40.3692143766479	1869	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2028	False	NA	NA	False	NA	NA	NA	107893783	107889017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
57324	chr7	-	1290	6	NNC	ENSMUSG00000030689.16	novel	1741	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	441.015464581459	10	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9149	False	NA	NA	False	NA	NA	NA	126461055	126451604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126452164_126456397_126456735_126457045_126457137_126460411_126460465_126460647_126460719_126460876
57325	chr16	+	932	1	NIC	ENSMUSG00000022763.19	novel	2357	21	NA	NA	3626	-32	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTACCTTAAAATTAAAAC	NA	False	NA	NA	False	NA	NA	NA	17324381	17325313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17324400_17325300
57328	chr15	-	1700	4	FSM	ENSMUSG00000022634.10	ENSMUST00000080299.7	1676	4	-24	0	-24	0	multi-exon	FALSE	canonical	3	129	junction_3	11.0453610171873	103	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGCATTTTGTTTACAA	NA	False	NA	NA	False	NA	NA	NA	93234713	93182158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_93183504_93184290_93184444_93234220_93234347_93234637
57330	chr8	-	2351	4	ISM	ENSMUSG00000050751.15	ENSMUST00000136892.3	1739	7	16687	-963	-983	-7	3prime_fragment	FALSE	canonical	3	93	junction_3	5.71547606649408	93	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGATGTCGGCTGTTAGT	NA	False	NA	NA	False	NA	NA	NA	125103268	125095798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_125097426_125098590_125098697_125100984_125101183_125102848
57331	chr17	+	1715	2	FSM	ENSMUSG00000033739.9	ENSMUST00000036720.9	1270	2	23	-468	23	468	multi-exon	FALSE	canonical	3	34	junction_1	0	163	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGCTGAGCCATCTCTT	7382	False	NA	NA	False	NA	NA	NA	34863760	34865766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34863928_34864218
57332	chr14	+	1443	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	64	6	1	-6	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	1	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAATGAAGTCTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	14296811	14303771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
57333	chr2	-	1367	4	FSM	ENSMUSG00000015776.13	ENSMUST00000015920.12	973	4	-73	-321	35	-5	multi-exon	FALSE	canonical	3	133	junction_1	17.7951304200522	282	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTGTTGTCTGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	26800654	26795278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26796006_26798104_26798314_26799004_26799086_26800304
57334	chr13	-	848	6	ISM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	49511	-11	35403	11	3prime_fragment	FALSE	canonical	3	105	junction_5	13.6176356244394	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAATAGATGGAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	55198602	55176096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553
57335	chr16	-	1129	4	NNC	ENSMUSG00000040681.17	novel	261	5	NA	NA	42	646	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3327.64451226389	1	58	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	NA	False	NA	NA	NA	95928887	95922787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923599_95925913_95926046_95928352_95928404_95928752
57336	chr17	+	492	1	Intergenic	novelGene_131	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCCAGACACCCCACACA	NA	False	NA	NA	False	NA	NA	NA	32423343	32423835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_32423300_32423800
57337	chr17	+	1413	1	Intergenic	novelGene_130	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTAGCATTTTCGGTGAC	NA	False	NA	NA	False	NA	NA	NA	32421872	32423285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_32421900_32423300
57339	chr5	-	1018	5	NNC	ENSMUSG00000032959.13	novel	779	5	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1352.16576276727	3	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTATTTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	117425651	117420716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117421032_117421216_117421531_117423785_117423887_117424199_117424310_117425473
57340	SIRV6	+	378	4	FSM	SIRV6A	SIRV608	377	4	-1	0	-1	0	multi-exon	FALSE	canonical	3	18415	junction_1	2118.18355095954	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTATTAGCCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3022	11270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_3165_10724_10819_11031_11109_11205
57341	chr2	-	1920	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-38	-1	combination_of_known_junctions	FALSE	canonical	3	5	junction_3	11.1455023315337	3	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	87327475	87319431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_87320426_87321167_87321750_87322478_87322538_87327190
57344	chr12	-	2367	3	NNC	ENSMUSG00000043673.12	novel	2933	3	NA	NA	700	1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	27	54	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCCTTGTTTCTATGTT	4707	False	NA	NA	False	NA	NA	NA	11199674	11140739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_11142757_11169759_11169950_11199514
57345	chr9	+	2940	1	NIC	ENSMUSG00000097574.3	novel	1444	4	NA	NA	24	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	23	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATAGCCTTGGGATTTCTT	NA	False	NA	NA	False	NA	NA	NA	78083219	78086159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_78083200_78086200
57346	chr3	-	1553	5	FSM	ENSMUSG00000048581.13	ENSMUST00000061706.7	1640	5	87	0	6	0	multi-exon	FALSE	canonical	3	41	junction_2	6.68487097856047	105	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTGAGATCACTC	NA	False	NA	NA	False	NA	NA	NA	63836806	63822104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_63823160_63827621_63827783_63832754_63832903_63834684_63834745_63836677
57347	chr17	+	1649	5	NIC	ENSMUSG00000040482.17	novel	1447	7	NA	NA	23	-10	intron_retention	FALSE	canonical	3	133	junction_1	22.1189963605947	7	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGTGGGTCTCTTGCTG	2999	False	NA	NA	False	NA	NA	NA	35056017	35058152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35056193_35056368_35057422_35057523_35057660_35057788_35057884_35057962
57348	chr18	+	3018	5	ISM	ENSMUSG00000040560.11	ENSMUST00000236879.2	6987	27	217881	2	148624	-2	3prime_fragment	FALSE	canonical	3	45	junction_1	6.97764286847643	4	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTAAAGGTGGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	64059666	64122823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_64059800_64060336_64060420_64068919_64069020_64112390_64112496_64120226
57349	chr9	+	2569	6	FSM	ENSMUSG00000032392.12	ENSMUST00000213396.2	2518	6	-55	4	-55	2	multi-exon	FALSE	canonical	3	51	junction_2	11.7915223783869	61	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTTGTCTGTGACTGTC	NA	False	NA	NA	False	NA	NA	NA	65122371	65146502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
57350	chr12	+	834	10	NIC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	1274.53376612299	59	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4765	False	NA	NA	False	NA	NA	NA	71021439	71041278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_71021542_71025506_71025590_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
57351	chr4	-	1446	4	ISM	ENSMUSG00000028809.17	ENSMUST00000084846.12	3740	18	28352	-2	-43	2	3prime_fragment	FALSE	canonical	3	1060	junction_3	116.610462652371	2	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	NA	False	NA	NA	NA	135052203	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129
57352	chr10	-	1921	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182152.2	847	4	83	-1157	83	-20	multi-exon	FALSE	canonical	3	55	junction_3	143.861816414997	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTAGCAATTGGCCTTAA	NA	False	NA	NA	False	NA	NA	NA	59838508	59823250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239
57353	chr11	+	865	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	-128	0	-1	0	multi-exon	FALSE	canonical	3	940	junction_1	75.5	5221	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2324	False	NA	NA	False	NA	NA	NA	97576650	97579447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97577042_97577326_97577447_97579093
57356	chr3	-	1925	2	Antisense	novelGene_ENSMUSG00000027998.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGGCCACATCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	82977510	82974957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_82976367_82976994
57357	chr6	-	1037	5	Antisense	novelGene_ENSMUSG00000030041.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCGCTCTTGGAGATCAC	NA	False	NA	NA	False	NA	NA	NA	83007163	82982518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_82982650_82983298_82983438_83003175_83003384_83005367_83005512_83006748
57358	chr2	+	2479	11	FSM	ENSMUSG00000026842.17	ENSMUST00000028190.13	5794	11	61	3254	61	634	multi-exon	FALSE	canonical	3	93	junction_1	30.1131200641846	51	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCAGGCAGGTCACTGCC	NA	False	NA	NA	False	NA	NA	NA	31650015	31690985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31650128_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
57359	chr15	-	979	4	NNC	ENSMUSG00000022617.16	novel	2455	3	NA	NA	-66	18	intron_retention	FALSE	non_canonical	0	0	junction_2	185.821300058835	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATGGCCTTTCTACAAA	1920	False	NA	NA	False	NA	NA	NA	89313362	89311819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89312219_89312336_89312444_89312668_89313031_89313251
57360	chr14	-	1369	9	NNC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1399.57520340995	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAACTGTCTCCAAAATA	8754	False	NA	NA	False	NA	NA	NA	52341456	52312257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312613_52312711_52312894_52313069_52313164_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
57361	chr3	+	1540	14	NNC	ENSMUSG00000040213.14	novel	1888	14	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	28.4211772030904	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCTCCGTGTTGTACTT	NA	False	NA	NA	False	NA	NA	NA	142406890	142450097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_142406937_142412449_142412553_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440312_142440422_142443532_142443607_142443985_142444073_142449831
57362	chr9	-	1112	8	NNC	ENSMUSG00000032459.10	novel	1197	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	189.52152427433	3	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTAATTCGTTTTT	NA	False	NA	NA	False	NA	NA	NA	98483717	98470782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_98470980_98472087_98472197_98474607_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480263_98483525
57363	chr7	+	2922	1	NIC	ENSMUSG00000044952.6	novel	2966	2	NA	NA	14964	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	19	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTACTTTGTGTCTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	96996497	96999419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_96996500_96999400
57364	chr8	-	1002	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	-1	3901	-1	418	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	37	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTCTCGTTTACTTAAGA	NA	False	NA	NA	False	NA	NA	NA	127672591	127661317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
57367	chr11	-	1637	8	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	-2520	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	466.806606811927	14	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTGAGTGCAGATCTTT	NA	False	NA	NA	False	NA	NA	NA	119186942	119179190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179611_119179694_119179803_119183644_119183761_119184384_119185232_119185396_119185530_119186298_119186362_119186892
57368	chr5	+	2112	12	NIC	ENSMUSG00000028999.16	novel	3298	15	NA	NA	8	342	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	24.0395679338519	2	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGATGGTGTGGACCTCT	NA	False	NA	NA	False	NA	NA	NA	23992746	24021065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016841_24020649
57369	chr18	-	1747	6	FSM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	-426	1097	-426	0	multi-exon	FALSE	canonical	3	52	junction_4	6.15142259969188	261	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTTAAAAGCATTTTT	NA	False	NA	NA	False	NA	NA	NA	84970075	84965412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84969127
57370	chr8	-	2453	8	NNC	ENSMUSG00000034416.19	novel	1107	2	NA	NA	-1913	5683	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.20398256273205	28	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCACAGATGTGGTTGTG	NA	False	NA	NA	False	NA	NA	NA	117757495	117744605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117744826_117745223_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017_117755235_117756259_117756475_117757280
57371	chr2	-	797	5	NNC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	594.803538994179	66	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTTCGCCTGTCCAAT	NA	False	NA	NA	False	NA	NA	NA	25114668	25112175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25112528_25113278_25113381_25113945_25114057_25114135_25114245_25114545
57372	chr15	-	1886	14	NNC	ENSMUSG00000034022.9	novel	1433	12	NA	NA	882	8046	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	80	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTGAAGAAGAAAGACAGCA	NA	False	NA	-13	True	NA	NA	NA	76480016	76471956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76472060_76473266_76473439_76477463_76477510_76477629_76477818_76477907_76478058_76478141_76478252_76478351_76478483_76478561_76478648_76478728_76478810_76478872_76478953_76479046_76479137_76479211_76479480_76479551_76479654_76479737
57373	chr2	+	2171	8	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	-4	-11	at_least_one_novel_splicesite	TRUE	canonical	3	58	junction_7	13.998542198153	88	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTTTGGTGTGGCCG	NA	False	NA	NA	False	NA	NA	NA	180231250	180237618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180237000
57374	chr11	-	3951	24	ISM	ENSMUSG00000033987.17	ENSMUST00000132685.9	13612	81	36970	42961	38	17693	internal_fragment	FALSE	canonical	0	0	junction_8	1.78737432966039	15	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACGGTTGCCCCCAGTTC	7380	False	NA	NA	False	NA	NA	NA	117984490	117956862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_117957305_117957716_117957882_117958336_117958499_117959740_117959833_117960207_117960356_117961280_117961384_117963670_117963837_117964341_117964550_117964714_117964889_117964987_117965271_117969387_117969537_117970379_117970508_117971538_117971672_117972299_117972438_117972709_117972938_117973126_117973266_117973650_117973809_117976893_117976999_117977738_117977896_117978955_117979117_117979775_117979908_117981541_117981650_117982219_117982346_117984344
57375	chr2	+	514	2	NNC	ENSMUSG00000039069.20	novel	1444	7	NA	NA	58	-8735	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	0	1	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCACCTCCTGAGTAAGT	NA	False	NA	NA	False	NA	NA	NA	179712442	179713665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_179712878_179713586
57376	chr9	+	1528	10	NIC	ENSMUSG00000010057.9	novel	1441	11	NA	NA	-2	-1	intron_retention	FALSE	canonical	2	6	junction_4	37.2303473718967	1	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGAGTACTGCTTCAGC	NA	False	NA	NA	False	NA	NA	NA	107419422	107422904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421375_107421487_107421578_107421677_107421796_107422040_107422112_107422231_107422443_107422587_107422689
57377	chr16	+	2100	9	NNC	ENSMUSG00000008976.17	novel	4987	10	NA	NA	208	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	211.235317537101	1	105	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAAATTCCAAAATGATA	NA	False	NA	NA	False	NA	NA	NA	84632219	84658193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84653359_84653404_84653921_84654063_84654267_84654461_84657262
57378	chr7	-	888	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	271	186	2	3	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCAGTGTTTGTATTTT	1656	False	NA	NA	False	NA	NA	NA	80597257	80565310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
57380	chr10	+	1476	4	Antisense	novelGene_ENSMUSG00000034024.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCGGGGAAAGAGAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	116896408	116899672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_116897487_116897929_116898039_116898728_116898955_116899609
57382	chr6	-	987	4	NNC	ENSMUSG00000042770.9	novel	1058	4	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	129.399467627275	13	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTTTTAAATTATTTCC	NA	False	NA	NA	False	NA	NA	NA	135145193	135114516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_135115062_135129818_135129946_135132148_135132288_135145017
57383	chr10	-	2620	4	NIC	ENSMUSG00000040415.16	novel	1994	5	NA	NA	-3	-5	intron_retention	FALSE	canonical	3	65	junction_3	35.5559027760824	20	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTATGCCACACCCGTCTT	NA	False	NA	NA	False	NA	NA	NA	127031591	127026251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127027423_127028477_127029673_127030278_127030504_127031562
57385	chr12	+	1294	12	NNC	ENSMUSG00000021115.16	novel	1509	13	NA	NA	-10	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	382.673479268602	1	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTTTGTGTACTTTAC	NA	False	NA	NA	False	NA	NA	NA	105976564	106041440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106024101_106024235_106024834_106024956_106025876_106025931_106028888_106029068_106036783_106036875_106041265
57386	chr14	-	1874	10	FSM	ENSMUSG00000022221.15	ENSMUST00000022830.14	1892	10	13	5	5	-3	multi-exon	FALSE	canonical	3	118	junction_2	8.73194786861711	291	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGAGAGTCTGAGGTGT	NA	False	NA	NA	False	NA	NA	NA	56026309	56022456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025839_56026073
57387	chr6	-	1372	8	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	5	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	306.500990443517	2	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAAGACTGGCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	33037147	32769165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945194_32985473_32985500_33026271_33026360_33036934
57388	chrX	+	1153	4	NNC	ENSMUSG00000045237.6	novel	1094	3	NA	NA	-272	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	162.403475605939	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	NA	False	NA	NA	NA	69429210	69433023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_69429396_69429608_69429758_69431499_69431773_69432477
57389	chr17	+	1898	19	NNC	ENSMUSG00000041119.13	novel	2089	19	NA	NA	-17	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	24.3310501211929	1	53	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGAAATGGGTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	31605210	31695124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662876_31667333_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680698_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690829_31692131_31692254_31694898
57390	chr14	+	1250	13	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	-4	-936	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	496.689876415187	11	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTATGTATTGGCAATGA	NA	False	NA	NA	False	NA	NA	NA	45567280	45586226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581193_45585987
57391	chr11	-	3085	21	ISM	ENSMUSG00000020437.13	ENSMUST00000003459.4	3307	22	1774	2	320	-2	3prime_fragment	TRUE	canonical	1	1	junction_15	5.12127913709065	41	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTGGCTGCCACTGCTT	6863	False	NA	NA	False	NA	NA	NA	6469184	6456549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_6456833_6456906_6457062_6457868_6457983_6458189_6458295_6459324_6459470_6460147_6460372_6460867_6461076_6461482_6461650_6462160_6462294_6462462_6462538_6464466_6464538_6464751_6464923_6465093_6465209_6465848_6465995_6466078_6466304_6466747_6466865_6467086_6467198_6467569_6467624_6467851_6468018_6468733_6468828_6468978
57392	chr19	-	2540	14	NNC	ENSMUSG00000024665.9	novel	3150	12	NA	NA	287	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	148.050087478417	7	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTTATTCTCACTTGC	NA	False	NA	NA	False	NA	NA	NA	10078823	10040143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10040472_10040683_10041400_10041495_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
57393	chr16	+	1308	6	NIC	ENSMUSG00000004070.16	novel	1392	6	NA	NA	45	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	152.242438235861	44	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTGCCTAACAGCATTT	NA	False	NA	NA	False	NA	NA	NA	4574811	4584113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_4574992_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
57394	chr19	-	1033	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	-3	20	-3	-14	multi-exon	FALSE	canonical	3	87	junction_5	355.205486303351	105	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGGTCCAAGGAAGGTA	5841	False	NA	NA	False	NA	NA	NA	46327080	46318998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46327007
57395	chr2	+	3149	16	NIC	ENSMUSG00000070880.11	novel	3355	17	NA	NA	-14	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	2.98589275687449	14	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAATTTGTACCCATTTT	NA	False	NA	NA	False	NA	NA	NA	70392525	70432355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_70392677_70394111_70394255_70403049_70403209_70404412_70404656_70409454_70409546_70416177_70416291_70417466_70417583_70417666_70417747_70417977_70418033_70420116_70420234_70421449_70421515_70423775_70423855_70424967_70425118_70427505_70427614_70429952_70430043_70430966
57396	chr3	+	1578	4	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	7695	2644	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGACCGCCGCTGTGCACC	NA	False	NA	12	True	NA	NA	NA	90395680	90398330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90396903_90397462_90397580_90397854_90397902_90398138
57397	chr15	-	1257	11	NIC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	1	-1430	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	951.468281131852	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTTCTAATAAAGCATC	NA	False	NA	NA	False	NA	NA	NA	10485994	10476294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485440_10485503_10485820
57398	chr19	+	1493	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	62	-53	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	786.61442270022	2	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAATTTGTTTTCATTTTC	NA	False	NA	NA	False	NA	NA	NA	47720182	47723974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47720261_47721068_47721192_47721240_47721428_47721957_47722351_47723262
57399	chr14	-	1256	6	FSM	ENSMUSG00000033111.17	ENSMUST00000223927.2	1010	6	0	-246	0	0	multi-exon	FALSE	canonical	3	8	junction_2	68.9770976484224	291	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	10185509	10167783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185429
57401	chr12	-	1422	10	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	19	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	92.3712316927973	3	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCAAGGGTTTGTTTCAT	7691	False	NA	NA	False	NA	NA	NA	110807342	110774233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807256
57402	chr4	+	577	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	95	-36	95	36	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAAAAAAAAAAAAAAAAAT	115	False	NA	NA	False	NA	NA	NA	10848514	10849091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_10848500_10849100
57403	chr5	-	1843	9	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	0	-269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	294.142716211026	1	102	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAAGAAAGCCCACAGAG	NA	False	NA	NA	False	NA	NA	NA	34093594	34055528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056834_34057815_34058049_34058518_34058624_34058931_34058951_34077941_34077998_34079189_34079362_34093369
57404	chr1	-	1194	12	NNC	ENSMUSG00000013593.13	novel	1623	13	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	416.65896632003	103	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGCTTGTAATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	171074684	171062426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066324_171068668_171068707_171073659_171073767_171074562
57407	chr14	+	2010	8	FSM	ENSMUSG00000053253.17	ENSMUST00000138283.2	1695	8	106	-421	41	-6	multi-exon	FALSE	canonical	3	137	junction_7	99.9552961302691	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAACCTCTTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	105496293	105546726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545549
57408	chr11	+	986	5	FSM	ENSMUSG00000078656.12	ENSMUST00000144306.9	361	5	5	-630	0	1	multi-exon	FALSE	canonical	3	19	junction_3	527.253733983933	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	NA	False	NA	NA	NA	101144560	101150372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101147703_101147780_101149735
57409	chr6	-	964	7	NNC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	505.920832629858	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTTTTTTCTTTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	124689118	124681350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682532_124682571_124682620_124682703_124682806_124688838
57411	chr1	+	1431	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	16	4389	16	453	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTCCCTGCCTAGCTCAT	5629	False	NA	NA	False	NA	NA	NA	34478947	34484048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
57412	chr2	-	2795	11	FSM	ENSMUSG00000026836.16	ENSMUST00000056376.12	2394	11	300	-701	-29	-7	multi-exon	FALSE	canonical	3	23	junction_9	11.677328461596	101	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTCAAATGATGATTTT	NA	False	NA	NA	False	NA	NA	NA	58456869	58336459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58427789_58427886_58456798
57413	chr1	-	1188	3	Antisense	novelGene_ENSMUSG00000084799.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	3.5	9	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGATTTCTGAGTTCGA	282	False	NA	NA	False	NA	NA	NA	63178595	63170631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_63171583_63172303_63172514_63178568
57415	chr13	+	2390	5	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-7781	-2199	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTCCCCGAGCCGCGGC	NA	False	NA	NA	False	NA	NA	NA	104357337	104365351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_104359046_104359227_104359466_104359598_104359703_104361858_104361961_104365113
57416	chr3	+	883	7	NNC	ENSMUSG00000028138.9	novel	1604	9	NA	NA	-26	66	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	797.949176883396	25	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCATGTGTGTGTGAGT	4975	False	NA	NA	False	NA	NA	NA	138148904	138161070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138148955_138151050_138151153_138152843_138152959_138157149_138157266_138159502_138159639_138160428_138160568_138160845
57417	chr7	+	2123	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	29	47	29	-47	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	1	119	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGCTCTTTCCTTAGCT	NA	False	NA	NA	False	NA	NA	NA	121758690	121769049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
57418	chr12	-	964	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	-11	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.5	762	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6348	False	NA	NA	False	NA	NA	NA	102724073	102719533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_102719714_102719915_102720426_102723799
57419	chr5	-	994	5	NNC	ENSMUSG00000032959.13	novel	779	5	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1352.16576276727	5	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTATTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	117425651	117420715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117420966_117421175_117421531_117423785_117423887_117424199_117424310_117425473
57420	chr12	+	1514	7	NIC	ENSMUSG00000004788.12	novel	1605	8	NA	NA	-3	-24	intron_retention	FALSE	canonical	3	336	junction_6	13.6188186793944	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCAATAAAAGCTACTGGAA	NA	False	NA	NA	False	NA	NA	NA	85266283	85273243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
57421	chr5	-	1242	8	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.270443550511	83	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9625	False	NA	NA	False	NA	NA	NA	137599313	137594906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137596851_137596942_137597855_137598086_137598238_137598315_137598532_137598806_137599252
57422	chr10	+	656	2	ISM	ENSMUSG00000034994.11	ENSMUST00000219497.2	651	3	528	-463	528	-1	3prime_fragment	FALSE	canonical	3	7978	junction_1	0	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCTCGCAACTCTGTTT	7129	False	NA	NA	False	NA	NA	NA	81017412	81018331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81017460_81017722
57423	chr1	+	1915	15	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	67	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	234.632495966065	1	101	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGCTTTTATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	131080984	131101209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088136_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095984_131098710_131098849_131101040
57424	chr3	+	1321	9	NNC	ENSMUSG00000028049.16	novel	1489	9	NA	NA	-4	-101	at_least_one_novel_splicesite	FALSE	canonical	2	40	junction_6	357.728925829321	2	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCGCCACCTCTCACAC	NA	False	NA	NA	False	NA	NA	NA	89084792	89089969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088533_89088584_89089232_89089351_89089605
57425	chr8	-	2156	13	Genic_Genomic	ENSMUSG00000098184.2	novel	972	1	NA	NA	-75521	-895	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	101	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCAGGCGCCGCGAGCG	NA	False	NA	NA	False	NA	NA	NA	122752905	122677307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_122677398_122701170_122701302_122702635_122702731_122705341_122705493_122718265_122718441_122723776_122724019_122727702_122727866_122732288_122732418_122733828_122733900_122734489_122734530_122747259_122747379_122750736_122750880_122752298
57426	chr3	-	2387	11	ISM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	6076	17	-1687	-17	3prime_fragment	FALSE	canonical	1	4	junction_7	6.71192967781993	37	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTGGTTTTGACATAAA	NA	False	NA	NA	False	NA	NA	NA	95589093	95583530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95584280_95584420_95584566_95584837_95585018_95585117_95585316_95586897_95587075_95587300_95587506_95587754_95587885_95588046_95588233_95588333_95588446_95588569_95588743_95588961
57427	chr1	-	1859	5	ISM	ENSMUSG00000089872.11	ENSMUST00000160889.8	2694	6	34201	58	10628	-58	3prime_fragment	FALSE	canonical	3	29	junction_3	7.44983221287567	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCCAGCTTAACAAGACT	NA	False	NA	NA	False	NA	NA	NA	190532032	190505133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209
57428	chr4	-	1906	7	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	24	-6	intron_retention	FALSE	non_canonical	0	0	junction_5	56.5786080501181	1	76	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGACCAACTTCATTCT	1997	False	NA	NA	False	NA	NA	NA	116664779	116661214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116662253_116662328_116662492_116662682_116662832_116663181_116663341_116663455_116663562_116663780_116663957_116664664
57429	chr13	+	1670	8	NNC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	20.6773068944716	57	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCTGCTGTGATA	NA	False	NA	NA	False	NA	NA	NA	65426664	65452031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_65426933_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65451631
57433	chr1	-	645	1	NIC	ENSMUSG00000060743.13	novel	2841	4	NA	NA	10323	130	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGCTTCTGGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	180630776	180630131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_180630100_180630800
57434	chr8	-	1343	9	FSM	ENSMUSG00000031539.7	ENSMUST00000210656.2	3373	9	-7	2037	-7	-2037	multi-exon	FALSE	canonical	3	19	junction_1	1.96452920568771	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGACCAAAGCCGGCAAG	NA	False	NA	NA	False	NA	NA	NA	23295645	23279406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
57435	chr2	-	1836	12	NNC	ENSMUSG00000039648.15	novel	2038	13	NA	NA	1	-14	intron_retention	FALSE	canonical	0	0	junction_10	55.391320142306	5	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTATTAGAACCCTCA	9537	False	NA	NA	False	NA	NA	NA	30084123	30075156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30082197_30082298_30084065
57437	chr5	+	1718	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198505.2	600	6	-404	-714	-344	-3	multi-exon	TRUE	canonical	2	9	junction_4	36.149688795341	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTCTGTTTGCTATTATT	NA	False	NA	NA	False	NA	NA	NA	124250015	124253543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252541_124252709_124252777
57440	chr6	+	1904	10	FSM	ENSMUSG00000072770.10	ENSMUST00000088294.12	1883	10	-23	2	-11	-2	multi-exon	FALSE	canonical	3	10	junction_9	45.7669890199324	49	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCACGTGCTCTGCTTA	NA	False	NA	NA	False	NA	NA	NA	125026898	125040228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452_125030916_125031635_125031769_125037772_125037953_125038048_125038217_125039398_125039483_125039898
57441	chr2	+	978	3	NNC	ENSMUSG00000027560.5	novel	1768	8	NA	NA	131749	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	4	121	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTAGTTCTTTCTGCAC	NA	False	NA	NA	False	NA	NA	NA	170705475	170721689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_170705737_170712730_170712852_170721093
57443	chr11	+	1913	4	FSM	ENSMUSG00000034757.16	ENSMUST00000036376.13	1939	4	8	18	0	-18	multi-exon	FALSE	canonical	3	77	junction_1	22.5437845585479	321	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCATTTTGTGGCTATG	NA	False	NA	NA	False	NA	NA	NA	102175764	102180045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102175915_102176489_102176545_102178133_102178698_102178901
57444	chr3	-	2873	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	-114	40	-23	-40	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	1	150	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAATTCTGTCTTCTTA	NA	False	NA	NA	False	NA	NA	NA	84489955	84403439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
57445	chr17	+	2172	7	NIC	ENSMUSG00000042099.17	novel	1640	10	NA	NA	42	2	intron_retention	FALSE	canonical	3	265	junction_4	37.993054920896	30	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTATTGTGTGGATGGAAGC	4561	False	NA	NA	False	NA	NA	NA	34036922	34041894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34041181_34041259
57446	chr2	+	1491	6	ISM	ENSMUSG00000026975.11	ENSMUST00000146382.8	2296	7	2793	28	2786	-26	3prime_fragment	FALSE	canonical	3	99	junction_5	15.0917195839308	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTAATTTTAGAA	NA	False	NA	NA	False	NA	NA	NA	24855270	24862147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
57447	chr5	-	1139	8	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	-220	419	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	565.331183412675	62	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	25047842	25008245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047622
57450	chr9	+	2081	6	NNC	ENSMUSG00000032479.16	novel	3320	11	NA	NA	2193	0	intron_retention	FALSE	non_canonical	0	0	junction_5	139.29766688642	2	102	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTATTGAAATGGCCTG	3669	False	NA	NA	False	NA	NA	NA	109900108	109912241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109911196_109911254
57451	chr5	-	2127	7	ISM	ENSMUSG00000029416.18	ENSMUST00000031367.15	2732	8	8358	0	293	0	3prime_fragment	FALSE	canonical	3	79	junction_6	14.46163506969	59	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGAGCTTCCTGATGGTT	NA	False	NA	NA	False	NA	NA	NA	127686122	127672727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_127673837_127677483_127677643_127678921_127679078_127680756_127680926_127681174_127681253_127681601_127681771_127685835
57452	chr14	-	2600	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	296	10	-8	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	2	122	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTTTATTTCATGTGT	NA	False	NA	NA	False	NA	NA	NA	52516706	52499225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
57453	chr13	+	2002	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	10	383	3	4	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	33	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATTGTTCTTTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	108295274	108331515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
57454	chr15	+	1643	2	ISM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	1811	5	-923	-5	3prime_fragment	FALSE	canonical	3	944	junction_1	0	331	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATAACTTCTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	88748199	88749924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_88748696_88748777
57455	chr13	+	2181	16	Fusion	ENSMUSG00000114388.2_ENSMUSG00000038651.16	novel	2641	29	NA	NA	-2324	-6	multi-exon	FALSE	canonical	3	6	junction_7	9.58239125804317	36	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGATCAGTTAGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	41299947	41332500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_41300150_41302269_41302328_41302410_41302490_41303953_41304003_41306165_41306311_41306906_41306957_41308994_41309122_41310909_41310994_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327673_41327774_41327873_41327933_41330358_41330421_41331657
57456	chr11	+	1462	16	Antisense	novelGene_ENSMUSG00000020599.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	7	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCCAGGCCACTCCCAC	NA	False	NA	NA	False	NA	NA	NA	109126725	109180382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_109126841_109128917_109129009_109130281_109130418_109131674_109131763_109137277_109137394_109138888_109139004_109139804_109139874_109150642_109150725_109159748_109159830_109164100_109164178_109166085_109166146_109166404_109166457_109166645_109166753_109167395_109167446_109172273_109172372_109180257
57458	chr10	+	755	1	FSM	ENSMUSG00000078348.5	ENSMUST00000105139.5	3841	1	3086	0	3086	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10213	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTATGGATTGCTG	NA	False	NA	NA	False	NA	NA	NA	12884172	12884927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_12884200_12884900
57462	chr1	+	830	5	NNC	ENSMUSG00000026087.12	novel	501	5	NA	NA	32	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	430.581583442673	11	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCATCTCCGCTGATGGAG	NA	False	NA	NA	False	NA	NA	NA	37932045	37937414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37932105_37933019_37933097_37934410_37934492_37936575_37936916_37937141
57463	chr11	-	1220	10	NNC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	119	-460	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	446.622662287905	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATCTCTCAGACTCTGT	NA	False	NA	NA	False	NA	NA	NA	21521815	21507246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514123_21514186_21514217_21515823_21515921_21516619_21516719_21521729
57464	chr16	-	1151	7	NNC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	189.059440976171	63	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGCTCTTTTCAGAACTA	NA	False	NA	NA	False	NA	NA	NA	31918569	31903254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_31903445_31904054_31904156_31906111_31906326_31908779_31908938_31911161_31911304_31915817_31915882_31918287
57465	chr4	-	2656	6	NNC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	35	55	intron_retention	FALSE	non_canonical	0	0	junction_1	56.9020210537376	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATGTGCACTTGTGAAA	NA	False	NA	NA	False	NA	NA	NA	129512834	129508863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129509275_129509394_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512666
57466	chr3	-	1366	10	NNC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	421.292660952976	1	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTTGTGTATATAGC	6162	False	NA	NA	False	NA	NA	NA	153618584	153612928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153613364_153613687_153613830_153614426_153614518_153614985_153615097_153615182_153615238_153615712_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
57467	chr4	-	1845	9	NIC	ENSMUSG00000028637.17	novel	1789	5	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	4.28478412525065	83	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTCTGGTGTTAGTAAT	9743	False	NA	NA	False	NA	NA	NA	119272698	119209445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
57469	chr5	+	1640	6	NIC	ENSMUSG00000029233.16	novel	628	4	NA	NA	20	-63	combination_of_known_junctions	FALSE	canonical	3	3	junction_1	20.4019606900906	2	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGATGTTTGTACTGA	NA	False	NA	NA	False	NA	NA	NA	76288596	76303263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_76288831_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
57470	chr5	+	1228	5	NIC	ENSMUSG00000041453.13	novel	1856	6	NA	NA	49	-14	intron_retention	FALSE	canonical	3	6955	junction_1	2767.33775495511	51	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCAGCACCAGGACTGTG	NA	False	NA	NA	False	NA	NA	NA	146769748	146772781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_146769982_146770993_146771073_146771257_146771915_146772373_146772525_146772673
57472	chr7	-	2333	3	FSM	ENSMUSG00000043432.8_ENSMUSG00000063838.7	ENSMUST00000076831.7	1025	3	134	-1442	134	1442	multi-exon	FALSE	canonical	3	137	junction_2	5.5	871	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAGAGCTCCAGAGCCC	NA	False	NA	NA	False	NA	NA	NA	4167725	4152816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4154787_4167091_4167187_4167457
57474	chr5	+	1318	2	Genic_Genomic	ENSMUSG00000070697.5	novel	1629	1	NA	NA	-43	-12	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTAAAGTGATTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	88702277	88703937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_88703116_88703457
57475	chr10	+	1704	3	FSM	ENSMUSG00000038240.14	ENSMUST00000160108.8	1671	3	-29	-4	2	4	multi-exon	FALSE	canonical	3	76	junction_1	2.5	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATCAGAATATTAATTAG	NA	False	NA	NA	False	NA	NA	NA	43097483	43222519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_43098057_43174794_43174930_43221523
57476	chr14	+	1919	4	FSM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	14	391	14	-391	multi-exon	FALSE	canonical	1	3	junction_2	7.40870359029762	88	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCAGAATACTGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	31363027	31390145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697
57477	chr11	-	470	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	139	2	77	1	multi-exon	FALSE	canonical	3	718	junction_2	4	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTGCTGTCTGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	70130529	70128951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70129297_70129763_70129841_70130481
57478	chr3	+	4287	1	ISM	ENSMUSG00000027784.11	ENSMUST00000029355.9	9417	4	239630	25	7512	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	25	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAAACTATATGTTCCTA	NA	False	NA	NA	False	NA	NA	NA	69463823	69468110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_69463800_69468100
57479	chr7	+	3317	14	NIC	ENSMUSG00000030519.15	novel	3321	15	NA	NA	-41	-9	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	1.27794213275663	6	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCAAAACTCCATATTTA	NA	False	NA	NA	False	NA	NA	NA	64151412	64403617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_64151567_64203394_64203520_64284778_64284833_64344771_64345766_64364178_64364260_64365258_64365296_64383260_64383407_64386628_64386716_64389446_64389633_64393007_64393188_64394163_64394377_64395445_64395566_64399850_64399992_64402818
57480	chr8	-	1842	9	Antisense	novelGene_ENSMUSG00000006585.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	270	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCCAGGGTCAGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	123299869	123295915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_123295983_123296060_123296213_123296640_123296841_123296932_123297077_123297177_123297276_123297977_123298167_123298432_123298587_123298674_123298868_123299224
57481	chr5	-	1327	10	NNC	ENSMUSG00000029397.16	novel	1967	9	NA	NA	-109	-284	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	106.57889907667	4	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTTCTTTTCTCTCT	1559	False	NA	NA	False	NA	NA	NA	92110703	92097143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488_92110579_92110613
57482	chr1	+	1871	8	NNC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	2	-29	at_least_one_novel_splicesite	FALSE	non_canonical	1	3	junction_1	85.5059372565581	1	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTTTCTAATAAAGGAC	NA	False	NA	NA	False	NA	NA	NA	171097910	171104438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171097985_171098856_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
57484	chr8	+	1519	5	FSM	ENSMUSG00000011837.5	ENSMUST00000011981.5	1536	5	17	0	3	0	multi-exon	FALSE	canonical	3	110	junction_3	11.3880419739304	276	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGATTCCCCCTTTGAC	NA	False	NA	NA	False	NA	NA	NA	4303096	4306220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_4303305_4304281_4304402_4304550_4304620_4304991_4305374_4305480
57486	chr7	-	1701	1	Antisense	novelGene_ENSMUSG00000070837.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTCAGGGCATCTGACAA	NA	False	NA	NA	False	NA	NA	NA	7004710	7003009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_7003000_7004700
57489	chr19	+	2095	12	NNC	ENSMUSG00000032946.17	novel	2219	17	NA	NA	7	2050	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	90.2687447624688	10	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTAAAGCTTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	6451738	6461748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461_6453594_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6461147
57491	chr2	-	1730	10	NIC	ENSMUSG00000027246.13	novel	1674	11	NA	NA	19	0	intron_retention	FALSE	canonical	3	70	junction_4	8.33259255966786	243	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	NA	False	NA	NA	NA	121273063	121269507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
57492	chr1	-	804	1	Antisense	novelGene_ENSMUSG00000097814.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGATGGGGAGGGCCGGG	NA	False	NA	NA	False	NA	NA	NA	96800773	96799969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_96800000_96800800
57493	chr3	-	1120	8	FSM	ENSMUSG00000068762.12	ENSMUST00000106685.9	1153	8	33	0	-1	0	multi-exon	FALSE	canonical	3	28	junction_3	8.51649060616507	146	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCCTGTCGTATT	1823	False	NA	NA	False	NA	NA	NA	107851032	107846162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107846633_107848308_107848420_107848504_107848601_107849448_107849550_107849648_107849731_107850017_107850083_107850560_107850637_107850913
57494	chr7	-	1620	10	NIC	ENSMUSG00000025494.9	novel	1612	10	NA	NA	568	4	combination_of_known_splicesites	TRUE	canonical	2	3	junction_9	45.4233855036949	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTATTTCTGTCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	140676033	140671083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140675967
57495	chr8	-	1148	5	FSM	ENSMUSG00000031796.8	ENSMUST00000212684.2	1023	5	28	-153	-6	0	multi-exon	FALSE	canonical	3	46	junction_4	193.603977231874	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	NA	False	NA	NA	NA	96161430	96146876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96161115
57496	chr5	-	1344	10	NNC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-16	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	480.829376066905	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTTTTCCTGCGTCAGG	NA	False	NA	NA	False	NA	NA	NA	100186770	100182586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184376_100184417_100184511_100184720_100184836_100184943_100185067_100185426_100185589_100185671_100185841_100186578
57497	chrX	+	1017	6	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	0	-132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.571611960023	2	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTACAAATGTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	99537960	99559599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99537968_99538620_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
57499	chr4	-	1760	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	-5	0	-5	0	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	1317	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	NA	False	NA	NA	NA	107110734	107090710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
57500	chr2	+	3915	2	FSM	ENSMUSG00000048482.15	ENSMUST00000111045.9	3973	2	75	-17	75	17	multi-exon	FALSE	canonical	2	4	junction_1	0	17	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAATATATTTTCAAAGTA	NA	False	NA	NA	False	NA	NA	NA	109523982	109557369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_109524255_109553726
57503	chr10	-	652	1	NIC	ENSMUSG00000035890.10	novel	1639	9	NA	NA	7139	-578	mono-exon	FALSE	NA	NA	NA	NA	NA	13	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGCAATGAGAACGCCAC	NA	False	NA	NA	False	NA	NA	NA	79595605	79594953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79595000_79595600
57504	chr19	-	1534	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1363.28142729225	1	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCTTCAAATAAAAACATC	NA	False	NA	NA	False	NA	NA	NA	8691236	8684965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687263_8689197_8689293_8690093_8690134_8690979
57505	chr15	+	1925	14	NNC	ENSMUSG00000022556.12	novel	2084	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	84.5285568496051	8	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACATACATACATACATA	7148	False	NA	NA	False	NA	NA	NA	76361648	76385170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382703_76382855_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
57506	chr12	-	2977	1	Intergenic	novelGene_4458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCTCATCCTAAGACCT	NA	False	NA	NA	False	NA	NA	NA	104633543	104630566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_104630600_104633500
57509	chr18	-	2585	3	NIC	ENSMUSG00000024645.6	novel	2499	4	NA	NA	1	-11	intron_retention	FALSE	canonical	3	61	junction_2	2.5	3	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACTAACTAGAAGATGT	NA	False	NA	NA	False	NA	NA	NA	84969648	84965425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_84965871_84965958_84967578_84969127
57510	chr14	-	668	1	Genic_Genomic	ENSMUSG00000021965.4	novel	NA	NA	NA	NA	3067	1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATGTTGCCAACTCT	NA	False	NA	NA	False	NA	NA	NA	58044684	58044016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_58044000_58044700
57511	chr8	-	2597	13	FSM	ENSMUSG00000064325.5	ENSMUST00000079038.4	9074	13	451	6026	451	-6026	multi-exon	FALSE	canonical	1	1	junction_5	3.65433532488012	29	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGCATGTTTCCAAACT	4757	False	NA	NA	False	NA	NA	NA	80784184	80698507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_80699156_80701623_80701773_80713564_80713647_80715876_80716008_80716874_80716999_80719102_80719225_80723351_80723496_80724083_80724258_80724787_80724940_80770574_80770777_80771679_80771837_80778056_80778250_80783865
57513	chr8	-	2811	2	Intergenic	novelGene_1608	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACCTTCCACCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	27713498	27710026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_27712012_27712672
57514	chr14	+	1746	9	Intergenic	novelGene_566	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCAACCACAGAGAC	NA	False	NA	NA	False	NA	NA	NA	51002875	51022973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_51003479_51004598_51004745_51009572_51009787_51009929_51010080_51010734_51010793_51014718_51014870_51015213_51015424_51018929_51019064_51022893
57515	chr15	-	911	9	NNC	ENSMUSG00000055762.17	novel	2842	9	NA	NA	2	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1052.80550791682	8	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGAGACTCTGCACTCC	NA	False	NA	NA	False	NA	NA	NA	75781153	75767352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75767441_75767580_75767776_75768091_75768130_75768180_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
57516	chr11	+	248	1	ISM	ENSMUSG00000037791.16	ENSMUST00000108360.8	3047	11	111	43102	63	-42849	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCGGCCCGTGGGGAGGAC	NA	False	NA	NA	False	NA	NA	NA	77873690	77873938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_77873700_77873900
57517	chr2	+	1515	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109085.8	1789	11	269	5	-12	-5	multi-exon	FALSE	non_canonical	0	0	junction_2	262.324150622851	442	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAATACGGTGTTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	174172067	174188532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_174172228_174176004_174176078_174183442_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
57519	chr5	-	1440	6	NNC	ENSMUSG00000105987.5	novel	345	4	NA	NA	2	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6.74091981854109	29	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTAGTCTGAGGTCTTCTT	5259	False	NA	NA	False	NA	NA	NA	23917662	23903289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23904335_23905050_23905150_23905278_23905462_23915351_23915407_23916113_23916149_23917639
57520	chr2	+	1140	9	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	595.241967606452	23	4	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	NA	False	NA	NA	NA	151336214	151353225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151336333_151338503_151338602_151342634_151342710_151344928_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351518_151352977
57521	chr2	-	974	7	FSM	ENSMUSG00000027574.16	ENSMUST00000103053.10	950	7	-21	-3	-21	3	multi-exon	FALSE	canonical	3	96	junction_2	10.8576649832682	362	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTCGCATCCCTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	180596513	180576561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
57522	chr6	+	2257	2	Antisense	novelGene_ENSMUSG00000030122.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	82	53	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCCCCAGCTGCTAAGC	NA	False	NA	NA	False	NA	NA	NA	124890649	124893248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124891040_124891381
57523	chr19	-	2437	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236950.2	2437	18	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_17	12.9229818620786	85	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTTGTCCCTGTTTACA	9789	False	NA	NA	False	NA	NA	NA	10582748	10569560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582582
57524	chr1	+	1951	12	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	-3	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	25.4879650744496	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAAGAAAAAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	9618313	9647127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_9618377_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
57525	chr9	-	1472	11	Antisense	novelGene_ENSMUSG00002075151.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAAGATAGTGGGGAGC	NA	False	NA	NA	False	NA	NA	NA	21597509	21578648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21578703_21580228_21580347_21580842_21580951_21581777_21581865_21583336_21583385_21584464_21584632_21586361_21586525_21588743_21588975_21589613_21589689_21590223_21590443_21597307
57526	chr14	+	1454	14	NNC	ENSMUSG00000021832.9	novel	2234	14	NA	NA	-18	-878	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	857.3014425006	3	63	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTAATTCAGTAATT	NA	False	NA	NA	False	NA	NA	NA	45567266	45586284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_45567561_45568295_45568367_45568443_45568484_45569362_45569416_45572109_45572168_45572373_45572470_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581176_45584200_45584273_45586043
57527	chr18	+	1303	9	NNC	ENSMUSG00000024525.8	novel	5054	8	NA	NA	-2	1927	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	376.690004347076	4	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGCTTTGGGTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	67422319	67451906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67422577_67435245_67435298_67435348_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
57529	chr7	-	2876	1	Antisense	novelGene_ENSMUSG00000001918.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCACCTCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	16520298	16517422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_16517400_16520300
57530	chr3	+	3412	6	FSM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	352	0	352	0	multi-exon	FALSE	canonical	3	249	junction_5	17.0105849399719	180	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTAGTGTCTGTCTCGT	NA	False	NA	NA	False	NA	NA	NA	145464781	145600032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145464920_145551459_145551560_145558005_145558080_145558911_145559032_145594838_145594983_145597196
57531	chr3	+	1806	14	NNC	ENSMUSG00000027671.15	novel	2010	14	NA	NA	-66	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	391.083413975063	1	112	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAAGCGTGCTGGATT	NA	False	NA	NA	False	NA	NA	NA	32762847	32781114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772271_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
57532	chr7	+	2581	14	FSM	ENSMUSG00000025478.16	ENSMUST00000026551.15	3552	14	49	922	22	-1	multi-exon	FALSE	canonical	1	1	junction_6	3.36181128975572	19	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAACAAAAAACTCTGGG	NA	False	NA	NA	False	NA	NA	NA	138665965	138681698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_138666078_138669425_138669515_138670074_138670260_138671777_138671943_138673521_138673584_138673676_138673758_138674309_138674379_138674772_138674894_138676083_138676241_138676582_138676725_138677737_138677909_138678385_138678566_138679655_138679822_138680817
57533	chr2	+	1758	5	NNC	ENSMUSG00000027424.12	novel	2308	5	NA	NA	1009	-130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	220.895337207466	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCATTGGCTGTTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	144113869	144122306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_144114405_144118234_144118452_144120913_144121047_144121400_144121687_144121719
57534	chr2	+	1656	8	FSM	ENSMUSG00000027560.5	ENSMUST00000029075.5	1768	8	108	4	108	-4	multi-exon	FALSE	canonical	0	0	junction_2	9.45666809339164	26	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATTCGTTAGTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	170573834	170721685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_170574109_170642769_170642878_170671759_170671875_170671988_170672109_170674801_170674992_170683339_170683476_170712730_170712852_170721093
57536	chr7	-	1687	11	NNC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	858.544139808781	1	86	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTCTTGATGTGTTTGTC	NA	False	NA	NA	False	NA	NA	NA	79765078	79744594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748516_79748663_79748745_79748907_79750490_79750657_79752873_79752969_79764909
57537	chrX	-	2331	10	NNC	ENSMUSG00000050379.16	novel	3457	10	NA	NA	6	-928	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	19.5397663531528	19	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGCTCAGTGGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	36253138	36175906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36176908_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205734_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
57541	chr6	-	832	6	NNC	ENSMUSG00000023456.17	novel	1552	6	NA	NA	0	120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	742.905539082863	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCTGAGCCGTTTCCACC	NA	False	NA	NA	False	NA	NA	NA	124791117	124788101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789747_124789877_124790970
57542	chr9	-	2483	1	FSM	ENSMUSG00000053128.16	ENSMUST00000056328.6	2724	1	241	0	210	0	mono-exon	FALSE	NA	NA	NA	NA	NA	126	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCCTTGGGAGTGGT	9503	False	NA	NA	False	NA	NA	NA	44024560	44022077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44022100_44024600
57543	chr16	+	2542	13	FSM	ENSMUSG00000035506.17	ENSMUST00000059056.15	3166	13	-113	737	-62	-8	multi-exon	FALSE	canonical	3	33	junction_4	11.0754984838908	91	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTATTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	33338585	33483768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
57544	chr13	+	1845	7	NNC	ENSMUSG00000021504.15	novel	2130	6	NA	NA	18	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	36.6787858759438	5	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTTTGGTTGACCAAAG	NA	False	NA	NA	False	NA	NA	NA	55747895	55758204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031_55757689_55757904
57545	chr3	-	1603	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	23	3071	23	-2938	multi-exon	TRUE	canonical	3	192	junction_3	19.06494747494	175	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGCCTGCATTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	57483226	57366140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
57546	chr11	+	2568	9	NIC	ENSMUSG00000043857.17	novel	4258	18	NA	NA	-56	-5	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.88887666274483	35	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATGAAGAAATTGGTGG	3771	False	NA	NA	False	NA	NA	NA	116857565	116877761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116857665_116859210_116859345_116864126_116864258_116868506_116868663_116868887_116869035_116869189_116869307_116874417_116874493_116875700_116875958_116876309
57547	chr7	-	410	2	ISM	ENSMUSG00000050708.17	ENSMUST00000210106.2	943	4	0	1186	0	-1024	5prime_fragment	FALSE	canonical	3	74401	junction_1	0	42	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCAGAACGATCGCGGG	NA	False	NA	NA	False	NA	NA	NA	45109263	45108554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45108655_45108953
57548	chr16	-	2148	2	ISM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	35459	9	35297	-9	3prime_fragment	FALSE	canonical	3	16	junction_1	0	8	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAATAAATGTCTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	35656455	35653252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_35655306_35656360
57549	chr17	+	1129	5	NIC	ENSMUSG00000002660.9	novel	983	6	NA	NA	-334	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_3	615.837032014152	13	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	NA	False	NA	NA	NA	57296970	57303188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57297514_57297605_57297678_57298293_57298391_57300447_57300554_57302877
57550	chr18	-	2591	7	NNC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	150.093766988802	1709	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCATGGTGGCTTCCTG	6768	False	NA	NA	False	NA	NA	NA	74340847	74328367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339833_74339956_74340664
57551	chr13	+	1894	1	Antisense	novelGene_ENSMUSG00000060147.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCACTTCGGTGAGAA	NA	False	NA	NA	False	NA	NA	NA	34112182	34114076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34112200_34114100
57554	chr6	+	2215	1	FSM	ENSMUSG00000057497.9	ENSMUST00000203237.2	1306	1	49	-958	39	-821	mono-exon	FALSE	NA	NA	NA	NA	NA	11	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATCCCAACTCACTTCC	8734	False	NA	NA	False	NA	NA	NA	86342744	86344959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86342700_86345000
57555	chr13	+	2173	10	NNC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	2	-849	intron_retention	FALSE	canonical	0	0	junction_3	255.303208744155	37	68	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGTAGACCTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	107083664	107095419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_107083792_107084093_107085296_107086062_107086129_107086211_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107093601_107093709_107095162
57556	chr5	+	1010	2	Genic_Genomic	ENSMUSG00000079067.6	novel	279	1	NA	NA	-97	778	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTACAGTTAGGCTTGG	NA	False	NA	NA	False	NA	NA	NA	84271074	84272228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_84271226_84271369
57557	chr12	-	894	6	NNC	ENSMUSG00000021079.17	novel	990	6	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	124.393890525218	31	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTGTCTTTACTGTATA	NA	False	NA	NA	False	NA	NA	NA	71183362	71169945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71180673_71180772_71183328
57558	chr2	-	1177	1	ISM	ENSMUSG00000027547.18	ENSMUST00000075044.10	2534	3	17518	3	6432	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	20	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCGGGCTTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	168591431	168590254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168590300_168591400
57559	chr13	+	1434	1	Antisense	novelGene_ENSMUSG00000041297.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGAATTTTCCTGTATTA	NA	False	NA	NA	False	NA	NA	NA	17890550	17891984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_17890600_17892000
57560	chr4	+	1365	10	ISM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	525	13	-5	-13	3prime_fragment	FALSE	canonical	2	236	junction_5	33.0390715201499	15	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTTTTCTGACACCAGA	154	False	NA	NA	False	NA	NA	NA	41755752	41758682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
57561	chr11	+	1494	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	19	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4190.76406783086	1	85	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3054	False	NA	NA	False	NA	NA	NA	75623757	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642712_75642907_75646399_75646507_75647726_75647821_75650103_75650229_75655470_75656181_75656300
57562	chr3	-	3042	6	Antisense	novelGene_ENSMUSG00000037643.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	104	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTCATGGGGAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	31106884	31095591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_31095678_31097839_31097956_31099025_31099115_31100624_31100711_31101119_31101237_31104336
57563	chr4	+	486	3	NNC	ENSMUSG00000028691.13	novel	636	5	NA	NA	110	243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12140.5	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGATTCATTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	116544618	116556712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116544629_116550913_116551045_116556367
57564	chr15	-	2294	17	NNC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	2	-3	intron_retention	FALSE	non_canonical	0	0	junction_8	26.7452536677071	23	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATGACAGTCTGGTCCC	NA	False	NA	NA	False	NA	NA	NA	89080666	89069024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89071023_89071158_89071447_89072352_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
57566	chr11	-	1431	7	FSM	ENSMUSG00000018761.15	ENSMUST00000148242.8	971	7	-139	-321	-84	-9	multi-exon	FALSE	canonical	3	35	junction_4	228.446018423026	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACAAAATTGTGTTTAGT	6677	False	NA	NA	False	NA	NA	NA	69553552	69547531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548883_69549391_69549525_69549636_69549703_69553294
57567	chr11	-	1426	3	FSM	ENSMUSG00000018648.16	ENSMUST00000100705.11	1447	3	20	1	20	-1	multi-exon	FALSE	canonical	3	59	junction_2	13.5	123	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTTTATTAATCATTTT	NA	False	NA	NA	False	NA	NA	NA	83959163	83938867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_83940137_83941657_83941747_83959095
57569	chr4	+	1121	4	NNC	ENSMUSG00000047613.11	novel	1098	4	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	388.891015867199	1955	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	154041666	154046382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_154041780_154044209_154044320_154044987_154045450_154045946
57570	chr2	+	1288	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	49.2084568161025	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	130	True	NA	NA	NA	119857971	119863075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862321_119862482_119862594
57573	chr11	+	1617	9	FSM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	0	1199	0	-40	multi-exon	FALSE	canonical	3	91	junction_1	26.8953411393126	361	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAAGCTAGACGGCAAACA	NA	False	NA	NA	False	NA	NA	NA	109316771	109327775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
57574	chr1	+	626	4	NNC	ENSMUSG00000099498.2	novel	288	4	NA	NA	1058	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.82842712474619	68	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTGAGGTAAGAAAATGG	NA	False	NA	NA	False	NA	NA	NA	13140119	13148878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_13140310_13140350_13140656_13144917_13145000_13148829
57575	chr2	-	1756	11	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	-11	921	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.1622245546258	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGCCTGATTGCTTAAA	NA	False	NA	NA	False	NA	NA	NA	153474671	153459832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_153460234_153460337_153460714_153461053_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
57576	chr2	+	805	1	FSM	ENSMUSG00000063611.6	ENSMUST00000238539.2	1675	1	865	5	865	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAAAAGTTGCCTTGGT	NA	False	NA	NA	False	NA	NA	NA	28396975	28397780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28397000_28397800
57577	chrX	+	1671	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	96	2463	96	-2463	multi-exon	FALSE	canonical	3	360	junction_3	33.4381425171914	1	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTAGTTAAGTTATTT	NA	False	NA	NA	False	NA	NA	NA	36390543	36411936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
57578	chr11	-	2803	15	NNC	ENSMUSG00000018501.18	novel	4215	23	NA	NA	4271	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	174.280971832433	1	133	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTTGGTTTTTATTGAAG	NA	False	NA	NA	False	NA	NA	NA	62231456	62208646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212261_62216312_62216460_62217951_62218073_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224971_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229892_62231233
57579	chr6	+	2641	6	NNC	ENSMUSG00000029815.13	novel	2819	4	NA	NA	2687	17462	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	158	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAGGTGGGAGGTGGCAT	103	False	NA	NA	False	NA	NA	NA	49062205	49081147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_49064371_49064702_49064817_49065365_49065521_49067935_49067987_49071075_49071193_49081108
57581	chr1	+	1098	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	64	122	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTCTACAGCCAAACAAT	4225	False	NA	NA	False	NA	NA	NA	135159796	135161085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_135159893_135160083
57585	chr11	+	1898	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	26	-3	26	0	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	94	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGTGTATAGTTAGGAC	1608	False	NA	NA	False	NA	NA	NA	4136847	4165505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
57586	chr2	+	3261	8	NNC	ENSMUSG00000008226.15	novel	1239	5	NA	NA	1281	-40	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	34.4110803227622	4	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAAAAATAAAAAGTAATAA	NA	False	NA	NA	False	NA	NA	NA	73144300	73168122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_73144406_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
57587	chr11	+	1161	9	NNC	ENSMUSG00000020407.14	novel	430	5	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1227.68346388636	2	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	NA	False	NA	NA	NA	9068696	9086164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068778_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081774_9083233_9083349_9084721_9084932_9085163_9085311_9085960
57590	chr16	-	560	3	ISM	ENSMUSG00000071533.12	ENSMUST00000130818.8	938	5	3	5056	3	-3935	5prime_fragment	FALSE	canonical	3	279	junction_2	1121.5	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGCGAATACCTACTTTA	NA	False	NA	NA	False	NA	NA	NA	55850036	55842417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_55842493_55844586_55845001_55849965
57591	chr16	-	291	2	ISM	ENSMUSG00000071533.12	ENSMUST00000096021.10	608	5	2561	1099	2521	-170	internal_fragment	FALSE	canonical	3	2309	junction_1	0	16	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGAAGTACACACGTGC	5341	False	NA	NA	False	NA	NA	NA	55842470	55838652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_55838891_55842417
57592	chrX	+	1013	5	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	13963	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1015.34633869434	1	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52090976	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52091149_52097529_52097647_52108975_52109029_52109199_52109277_52109943
57594	chr12	+	2384	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	-9	1933	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	214.20317457965	826	100	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAACGAATCCAAAGGGC	NA	False	NA	NA	False	NA	NA	NA	76812339	76831887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
57595	chr11	+	1479	3	FSM	ENSMUSG00000006127.10	ENSMUST00000129298.2	2075	3	3	593	3	-593	multi-exon	FALSE	canonical	3	159	junction_2	7.5	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTCAGGGGCACAACC	5491	False	NA	NA	False	NA	NA	NA	75521865	75525501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75522024_75523894_75524003_75524288
57597	chr13	-	885	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-20	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	45	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314357	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311594_34312434_34312515_34312854_34312966_34313228_34313338_34314159
57599	chr15	+	1072	3	ISM	ENSMUSG00000001289.13	ENSMUST00000165671.8	830	4	1453	-23	1434	-1	3prime_fragment	FALSE	canonical	3	877	junction_2	5	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATGGGGTGGTCTATTC	2062	False	NA	NA	False	NA	NA	NA	102236278	102239920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102237032_102237146_102237253_102239707
57600	chr17	-	1103	11	ISM	ENSMUSG00000023991.17	ENSMUST00000113262.2	3198	17	46098	1012	575	-1012	3prime_fragment	FALSE	canonical	3	128	junction_5	14.0957440385387	9	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGCAGAGGCAGAGGAAG	NA	False	NA	NA	False	NA	NA	NA	48189303	48179704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208
57601	chr15	-	2211	8	NIC	ENSMUSG00000001288.16	novel	2718	8	NA	NA	288	-155	combination_of_known_junctions	FALSE	canonical	3	4	junction_7	24.6344706226284	3	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTTATATTTAGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	102151736	102143529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102151647
57602	chr15	-	2007	4	NNC	ENSMUSG00000047878.14	novel	2092	3	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	40.185680147148	24	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2270	False	NA	NA	False	NA	NA	NA	83135928	83110922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83111257_83111294_83112796_83114714_83114859_83135900
57603	chr6	-	817	3	FSM	ENSMUSG00000030189.16	ENSMUST00000203157.2	1035	3	461	-243	461	-2	multi-exon	FALSE	canonical	3	3049	junction_2	113	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGTGTAACTAGTGTG	8063	False	NA	NA	False	NA	NA	NA	131345520	131341819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_131342369_131344727_131344827_131345351
57604	chr16	+	339	4	Antisense	novelGene_ENSMUSG00000043301.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	11	junction_3	6.94422221866655	24	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTCCTCTGTAAACAGT	NA	False	NA	NA	False	NA	NA	NA	94656160	94668272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_94656240_94659190_94659253_94667462_94667539_94668150
57606	chr17	-	1833	9	NNC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	1156	-1051	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	153.925306561332	1	77	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTCCCAACTGAAGCCT	NA	False	NA	NA	False	NA	NA	NA	53995150	53982864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_53983740_53983934_53984125_53985937_53986056_53986678_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017
57609	chr3	+	2383	9	FSM	ENSMUSG00000038298.15	ENSMUST00000058865.14	2406	9	14	9	14	-9	multi-exon	FALSE	canonical	3	10	junction_1	6.6226410894748	37	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCTATTTGGTAAAAT	7733	False	NA	NA	False	NA	NA	NA	96737405	96778233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96737473_96757543_96757756_96758806_96759057_96761849_96761987_96763170_96763367_96764510_96764708_96775623_96775849_96776256_96776548_96777425
57611	chr4	-	913	8	Intergenic	novelGene_2174	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	17	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGGCGCCATAGAGGAGGA	NA	False	NA	NA	False	NA	NA	NA	152345440	152262665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_152262792_152291211_152291346_152302197_152302354_152307531_152307625_152314284_152314345_152322134_152322222_152337603_152337721_152345300
57612	chr11	-	1892	14	NIC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	1	1532	combination_of_known_splicesites	FALSE	canonical	2	6	junction_13	48.9088029491334	3	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAACCAGCCGGTCACTGA	NA	False	NA	NA	False	NA	NA	NA	86148390	86123965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148330
57613	chrX	+	1799	2	ISM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	0	0	0	0	intron_retention	FALSE	canonical	3	343	junction_1	0	8	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	NA	False	NA	NA	NA	69429482	69433023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_69429758_69431499
57614	chr8	+	434	4	ISM	ENSMUSG00000046295.14	ENSMUST00000124520.8	1935	8	0	2516	0	-2197	5prime_fragment	FALSE	canonical	3	99	junction_2	8.01387685344754	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGAACCCACAGGTGAGAG	NA	False	NA	NA	False	NA	NA	NA	71858665	71859604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505
57615	chr7	+	1186	2	FSM	ENSMUSG00000008384.9	ENSMUST00000008528.8	1233	2	43	4	43	-4	multi-exon	FALSE	canonical	3	24	junction_1	0	272	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGTGTGTGTGCTTCTTT	6632	False	NA	NA	False	NA	NA	NA	27186377	27189737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27186504_27188677
57616	chr12	-	1798	1	ISM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	7356	7	7341	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAATGTGTTAGGAGCC	571	False	NA	NA	False	NA	NA	NA	112785653	112783855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_112783900_112785700
57617	chr17	+	2702	5	FSM	ENSMUSG00000051341.7	ENSMUST00000233281.2	3164	5	52	410	52	125	multi-exon	FALSE	canonical	3	13	junction_3	0.707106781186548	21	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAATAAAATTCTGCAA	NA	False	NA	NA	False	NA	NA	NA	21755852	21782453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21756096_21758834_21758933_21775246_21775338_21777396_21777524_21780310
57618	chr12	+	2232	20	NNC	ENSMUSG00000071454.14	novel	2112	19	NA	NA	-132	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.262200161822	98	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTGTGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	3622851	3831393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3622910_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799588_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
57619	chr17	+	361	1	Intergenic	novelGene_253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCGGTAAAACAGCTGCG	NA	False	NA	NA	False	NA	NA	NA	47016160	47016521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_47016200_47016500
57620	chr4	-	1265	9	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4463.29216358284	19	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCTAGTTTTGTCATAA	NA	False	NA	NA	False	NA	NA	NA	119151697	119135179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136165_119136203_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151618
57621	chr13	+	1904	7	Intergenic	novelGene_1417	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	56	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTTGTAGAAAGGCACCC	NA	False	NA	NA	False	NA	NA	NA	65721660	65846990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65721907_65722040_65723173_65840427_65840493_65840694_65840816_65843427_65843535_65844124_65844258_65846890
57622	chr4	-	1893	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	14	132	14	-132	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGCTGCTTTTATACTTT	-7	True	NA	NA	False	NA	NA	NA	34687424	34663388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
57623	chr11	-	1419	5	NNC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	120.759057631302	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTGTCTTTGCTTCTGT	4507	False	NA	NA	False	NA	NA	NA	102047188	102043373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102044136_102044246_102044421_102045382_102045530_102046549_102046731_102047033
57624	chr17	+	1355	3	Antisense	novelGene_ENSMUSG00000117406.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGCGCGTAGGCGGCCCC	5469	False	NA	NA	False	NA	NA	NA	24404078	24424509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24405264_24408919_24409028_24424447
57626	chr4	+	2313	1	NIC	ENSMUSG00000073700.4	novel	3986	4	NA	NA	6530	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	34	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCCCTAATTTTTGAAAT	3030	False	NA	NA	False	NA	NA	NA	152099789	152102102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152099800_152102100
57627	chr10	-	1379	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	-2	2	-2	-2	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	1384	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATCGCTGTGCGTATCCT	NA	False	NA	NA	False	NA	NA	NA	59838935	59823731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
57628	chr11	-	1742	2	FSM	ENSMUSG00000034120.19	ENSMUST00000138484.3	1814	2	70	2	-63	0	multi-exon	FALSE	canonical	3	235	junction_1	0	55	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATGTGTCCTGGTCTTT	6948	False	NA	NA	False	NA	NA	NA	116742975	116740731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116741180_116741681
57630	chr6	-	2131	12	Antisense	novelGene_ENSMUSG00000058440.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGAGCGCTGCCGCCTCTG	6341	False	NA	NA	False	NA	NA	NA	30140760	30048026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_30048111_30088829_30088987_30089912_30090158_30095361_30095453_30098446_30098580_30102171_30102306_30115008_30115169_30116092_30116291_30117052_30117182_30118972_30119104_30126231_30126353_30140212
57631	chr17	+	1584	7	NNC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	8	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	90.345017694515	15	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTCTGTGGCAAGTG	NA	False	NA	NA	False	NA	NA	NA	12338178	12438523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432411_12437876
57632	chrX	-	1254	1	Antisense	novelGene_ENSMUSG00000047694.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCAGGCCAGTAGCCCAA	NA	False	NA	NA	False	NA	NA	NA	97989029	97987775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_97987800_97989000
57633	chr17	+	1423	1	FSM	ENSMUSG00000061062.6	ENSMUST00000079363.6	1444	1	535	-514	535	514	mono-exon	FALSE	NA	NA	NA	NA	NA	1	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	78799545	78800968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_78799500_78801000
57634	chr1	+	1376	11	NNC	ENSMUSG00000006304.15	novel	1439	11	NA	NA	-4	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	696.995272580812	1	25	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTGAGAATTTGTTGAT	7844	False	NA	NA	False	NA	NA	NA	74275671	74307365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294162_74295148_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
57635	chr10	+	3008	10	ISM	ENSMUSG00000040624.19	ENSMUST00000154727.2	5405	15	29955	8636	-24350	-4864	internal_fragment	FALSE	canonical	3	12	junction_1	6.49406186497887	20	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGGAGAGGGAGAGAGGG	8877	False	NA	NA	False	NA	NA	NA	3883540	3908662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_3883748_3887849_3887982_3890168_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545
57636	chr4	+	2369	11	ISM	ENSMUSG00000043411.16	ENSMUST00000105839.8	2071	14	54	7987	33	-6066	5prime_fragment	FALSE	canonical	3	659	junction_9	186.595846684753	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGAGTGGTTGTGAGCCA	624	False	NA	NA	False	NA	NA	NA	137321571	137344615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668
57638	chr1	+	1169	1	ISM	ENSMUSG00000049339.17	ENSMUST00000188873.7	2477	9	3932	31	1406	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	57	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGGAAAAATAAACTGTTG	NA	False	NA	NA	False	NA	NA	NA	75123353	75124522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_75123400_75124500
57639	chr7	+	1352	4	NNC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	319.381694319926	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	138448388	138484786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_138448434_138475817_138476014_138478184_138478447_138483937
57640	chr19	+	1644	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2777.61444408687	1	102	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTACTGTTTGTCTT	4172	False	NA	NA	False	NA	NA	NA	41900473	41907095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904319_41905081_41905248_41906044
57642	chr11	-	1459	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1413	-3	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_8	27.8632262130572	169	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCTTGAATTCATCATT	NA	False	NA	NA	False	NA	NA	NA	100162110	100153715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100161862
57643	chr5	-	1306	10	NNC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	23	172	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	195.052952607715	33	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	121731620	121705768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121705898_121710726_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
57644	chr2	-	590	1	Intergenic	novelGene_2566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGATCACTTGGGGACAA	NA	False	NA	NA	False	NA	NA	NA	14998256	14997666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_14997700_14998300
57645	chr10	-	1926	5	ISM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	1075	2	-168	-2	3prime_fragment	FALSE	canonical	3	43	junction_1	38.9510911272072	6	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCACACCCGTCTTCTG	322	False	NA	NA	False	NA	NA	NA	127030503	127026248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278
57646	chr12	+	3900	8	NNC	ENSMUSG00000021171.9	novel	4187	9	NA	NA	935	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	74.4824318417519	1	128	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTACTCGTAATATGTTT	NA	False	NA	NA	False	NA	NA	NA	116321473	116336705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_116321555_116327021_116327165_116329174_116329549_116330549_116330649_116331327_116331460_116332355_116332462_116333631_116333682_116333790
57647	chr19	+	866	8	NIC	ENSMUSG00000108414.2	novel	709	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	781	junction_1	131.699255417603	11	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	8701503	8703807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8701848_8702035_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
57648	chr14	+	2379	8	NIC	ENSMUSG00000021809.11	novel	2494	9	NA	NA	0	-26	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	3.04389653609465	24	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAGGAATTAAATTTCA	NA	False	NA	NA	False	NA	NA	NA	20344782	20367617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20344861_20354020_20354161_20356299_20356435_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
57649	chr17	+	1703	2	Antisense	novelGene_ENSMUSG00000097624.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	70	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTCATTCATTGTAA	NA	False	NA	NA	False	NA	NA	NA	15461232	15463990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_15461391_15462445
57650	chr4	+	2421	5	NNC	ENSMUSG00000037366.15	novel	2248	11	NA	NA	13475	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	18.9274932307477	8	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTAAAAAGTCTATATCCA	NA	False	NA	NA	False	NA	NA	NA	134143755	134154696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_134143846_134145352_134145445_134147179_134147351_134149688_134149844_134152783
57651	chr13	-	1842	9	NIC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	847	junction_5	145.981109651215	517	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	6103	False	NA	NA	False	NA	NA	NA	56283246	56221434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283158
57652	chr9	+	1662	10	Antisense	novelGene_ENSMUSG00002075474.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGGAGACGCTACTTC	4177	False	NA	NA	False	NA	NA	NA	114415190	114469260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_114415407_114420582_114420759_114422502_114422580_114426545_114426898_114427771_114427904_114430409_114430521_114439709_114439794_114460901_114461052_114461744_114461841_114468992
57654	chr2	+	1260	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	95	5981	95	-5981	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTATTTAAAATATGCTT	NA	False	NA	NA	False	NA	NA	NA	153583288	153609249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
57656	chr9	+	1398	11	NNC	ENSMUSG00000010057.9	novel	1441	11	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	35.9751302985827	64	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATATTGAGTACTGCTT	NA	False	NA	NA	False	NA	NA	NA	107419426	107422900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421614_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443_107422587_107422689
57657	chr2	+	2214	5	Intergenic	novelGene_2832	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAGGCGCACATGGGTA	NA	False	NA	NA	False	NA	NA	NA	174162378	174169184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_174163248_174163449_174163990_174165455_174165759_174167686_174167947_174168942
57658	chr11	+	1698	4	NIC	ENSMUSG00000020287.16	novel	1404	5	NA	NA	-11	20	intron_retention	FALSE	canonical	2	4	junction_2	162.359683008642	12	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTCATGCAGTTAAT	NA	False	NA	NA	False	NA	NA	NA	32176493	32182042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_32176718_32177751_32177950_32179246_32180054_32181573
57660	chr2	-	654	1	Intergenic	novelGene_2748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATACAGTAGTAACTTTC	NA	False	NA	NA	False	NA	NA	NA	155997067	155996413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_155996400_155997100
57662	chr6	+	3142	1	Antisense	novelGene_ENSMUSG00000030067.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	98903213	98906355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_98903200_98906400
57663	chrX	+	1148	7	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-14	95	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	265.37960233095	1293	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAGATGACTCAATGTCC	NA	False	NA	NA	False	NA	NA	NA	37689517	37702398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37696963_37697209_37700631_37700711_37702097
57664	chr1	-	1438	10	NNC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	-26	-219	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	414.296488335242	1	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGCCCCTCCTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	92401515	92367219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_92367630_92379732_92379842_92388101_92388161_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
57665	chr14	+	2264	14	FSM	ENSMUSG00000039599.17	ENSMUST00000090499.13	2370	14	95	11	42	-9	multi-exon	FALSE	canonical	3	48	junction_9	83.3254828649349	44	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAACTTTAAGTTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	20398384	20433548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431816_20431890_20432984
57666	chr5	+	1506	2	Genic_Genomic	ENSMUSG00000070697.5	novel	1629	1	NA	NA	16	-13	multi-exon	FALSE	canonical	0	0	junction_1	0	3	53	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTAAAGTGATTGTGTT	NA	False	NA	NA	False	NA	NA	NA	88702336	88703936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_88702436_88702529
57667	chr17	-	1935	10	FSM	ENSMUSG00000067144.8	ENSMUST00000087012.7	1989	10	-6	60	-6	-60	multi-exon	FALSE	canonical	3	9	junction_9	10.8297714942322	137	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTTGGGGAAGTCATTG	2811	False	NA	NA	False	NA	NA	NA	46749389	46743168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748922
57668	chr7	+	3849	1	Antisense	novelGene_ENSMUSG00000037029.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCACTCAGGGAGTGAGT	5207	False	NA	NA	False	NA	NA	NA	29865317	29869166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_29865300_29869200
57669	chr16	-	1516	10	NNC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	2086	-10	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_9	86.1821212589442	1194	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTGAATCATTTTGGT	NA	False	NA	NA	False	NA	NA	NA	38236070	38216488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38235974
57670	chr6	-	3469	1	Antisense	novelGene_ENSMUSG00000029911.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCGGGAAACACAACTTCG	NA	False	NA	NA	False	NA	NA	NA	40451906	40448437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_40448400_40451900
57671	chr2	+	1005	6	Fusion	ENSMUSG00000078877.12_ENSMUSG00000078878.10_ENSMUSG00000095199.9	novel	1646	5	NA	NA	-181143	187485	multi-exon	TRUE	non_canonical	0	0	junction_1	14.4	1030	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCCAGAACGGTTTCCG	NA	False	NA	NA	False	NA	NA	NA	176031649	176690501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_176031797_176220781_176220909_176411081_176411143_176412300_176412609_176501682_176501709_176690165
57673	chr4	-	879	2	Genic_Genomic	ENSMUSG00000046341.6	novel	450	1	NA	NA	-94	437	multi-exon	FALSE	canonical	2	29	junction_1	0	39	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	69844410	69843429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_69844194_69844295
57674	chr8	-	2000	6	NIC	ENSMUSG00000002910.12	novel	2355	8	NA	NA	306	-4	intron_retention	FALSE	canonical	0	0	junction_4	41.0385184917779	1	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACACTGGGCCGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	71291856	71287778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290191_71291337_71291486_71291622
57675	chrX	+	1349	3	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1872	1	63	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100489447	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100489835_100491199_100491554_100491589
57676	chr15	-	1099	7	Antisense	novelGene_ENSMUSG00000022551.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCGGGCCGACGAGAGCT	4825	False	NA	NA	False	NA	NA	NA	76230137	76227725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76227889_76228497_76228637_76228814_76228907_76229009_76229166_76229248_76229413_76229675_76229776_76229852
57677	chr11	-	887	7	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGGTTGGTAAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	48696915	48692487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48692659_48693098_48693246_48694228_48694314_48694673_48694792_48694981_48695123_48696370_48696485_48696804
57678	chr7	+	1456	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	-58	2	-58	1	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	1107	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGAGTGGTCGTGTC	NA	False	NA	NA	False	NA	NA	NA	45204258	45216743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
57679	chr5	-	3200	16	FSM	ENSMUSG00000014158.13	ENSMUST00000071968.9	3228	16	22	6	19	-1	multi-exon	FALSE	canonical	2	11	junction_12	3.23865541373096	43	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACACAGTGAGGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	114796460	114760218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114760872_114761668_114761791_114763071_114763200_114764804_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114768804_114768964_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574_114782992_114796402
57680	chr1	-	2142	10	NNC	ENSMUSG00000026098.14	novel	2205	11	NA	NA	-1	55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	51.5668091166124	1	58	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAACTTAAAAGCGAACT	6094	False	NA	NA	False	NA	NA	NA	53336135	53236215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53236462_53245752_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
57681	chr9	+	1213	4	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	19544	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	419.19526078746	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	1863	False	NA	NA	False	NA	NA	NA	45301283	45307457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45301346_45301931_45301971_45302074_45302156_45306426
57683	chrX	-	823	4	NNC	ENSMUSG00000031146.7	novel	1212	4	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1064.44727441053	2	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGTTTAAGTCTATAATG	NA	False	NA	NA	False	NA	NA	NA	7537599	7534197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7534746_7535165_7535257_7535653_7535678_7537439
57685	chr14	+	1829	3	ISM	ENSMUSG00000021940.11	ENSMUST00000226512.2	1467	11	28064	-1346	28064	-7	3prime_fragment	FALSE	canonical	1	1	junction_2	2.5	12	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGCATTGCCTGGAGTG	3631	False	NA	NA	False	NA	NA	NA	33354962	33362704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_33355079_33360276_33360340_33361054
57686	chr5	-	1114	8	NNC	ENSMUSG00000015806.13	novel	1380	7	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	357.385289145985	22	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGTTGTCTTTTTCAC	NA	False	NA	NA	False	NA	NA	NA	45607529	45591397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_45591688_45591901_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
57687	chr12	-	1152	4	ISM	ENSMUSG00000062198.6	ENSMUST00000156852.2	4110	5	4	5058	0	-5058	5prime_fragment	FALSE	canonical	3	175	junction_2	23.4236347876812	12	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTAAGAATACATCATGT	NA	False	NA	NA	False	NA	NA	NA	55126889	55105596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_55106364_55107839_55107979_55109772_55109895_55126765
57690	chr8	-	363	1	Intergenic	novelGene_1692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGTCTCCAGATCTCTCC	NA	False	NA	NA	False	NA	NA	NA	89739083	89738720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89738700_89739100
57691	chr3	-	1182	9	ISM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	8715	1194	984	-469	3prime_fragment	FALSE	canonical	3	305	junction_4	36.7251191284657	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTACTTCCTTCCACCAC	7276	False	NA	NA	False	NA	NA	NA	138186561	138165910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448
57692	chr10	-	2133	5	NNC	ENSMUSG00000040415.16	novel	1925	6	NA	NA	183	-5	intron_retention	FALSE	canonical	0	0	junction_4	65.4116770920911	5	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTATGCCACACCCGTCTT	NA	False	NA	NA	False	NA	NA	NA	127031395	127026251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127027423_127028477_127029208_127029598_127029673_127030278_127030343_127031301
57693	chr11	+	2423	1	FSM	ENSMUSG00000046010.8	ENSMUST00000056677.8	1591	1	109	-941	109	941	mono-exon	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAAGAAGTCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	82655279	82657702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_82655300_82657700
57695	chr15	+	1770	11	FSM	ENSMUSG00000022575.6	ENSMUST00000023238.6	1792	11	12	10	0	-1	multi-exon	FALSE	canonical	3	30	junction_2	7.7614431647729	130	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCATAATGCTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	75734187	75739247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_75734331_75735253_75735478_75736092_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
57696	chr4	-	1035	7	NNC	ENSMUSG00000028218.20	novel	1639	9	NA	NA	27	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	183.380297015065	21	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTACATAGTCTTTC	-12	True	NA	NA	False	NA	NA	NA	12171844	12153727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_12153979_12155648_12155769_12164087_12164199_12168222_12168325_12168964_12169034_12170983_12171219_12171697
57697	chr6	-	1544	6	NNC	ENSMUSG00000029817.12	novel	3040	7	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	187.807774066996	4	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGATTGTCTCTTTATTT	4594	False	NA	NA	False	NA	NA	NA	49240963	49220858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49221697_49222395_49222427_49225919_49226109_49227796_49227957_49229315_49229450_49240771
57698	chr14	-	1127	3	ISM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	51	2291	51	2266	5prime_fragment	FALSE	canonical	3	181	junction_2	16.5	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTTGTTTGCTTATTCC	8927	False	NA	NA	False	NA	NA	NA	51033134	51028995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_51029764_51031014_51031332_51033092
57699	chr10	+	2422	13	FSM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	68	342	-24	-342	multi-exon	FALSE	canonical	3	459	junction_3	51.2387521532504	12	87	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCCTGCCTGGTCCTCTC	5518	False	NA	NA	False	NA	NA	NA	80905936	80918051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
57700	chr7	+	1845	5	FSM	ENSMUSG00000025470.12	ENSMUST00000210882.2	1757	5	-96	8	20	-5	multi-exon	FALSE	canonical	3	304	junction_1	31.3318926973779	35	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGATGGCATCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	139616344	139620507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238
57701	chr18	+	1343	3	ISM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	28	263	7	12	intron_retention	FALSE	canonical	3	1823	junction_2	46.5	18	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGAGTTGTCTGTTGA	-4	True	NA	NA	False	NA	NA	NA	10617802	10627967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_10617927_10623630_10623708_10626825
57705	chr17	+	1172	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	-31	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	2	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATAGCTGAATTTTGTT	3005	False	NA	NA	False	NA	NA	NA	35816883	35821664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821246_35821461
57706	chr17	+	1364	4	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	8783	0	8757	0	3prime_fragment	FALSE	canonical	3	55	junction_1	8.99382504215469	220	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTCGCACCCCGAGGT	NA	False	NA	NA	False	NA	NA	NA	57191259	57195904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57191969_57192083_57192224_57193440_57193688_57195636
57707	chr8	+	1486	6	Antisense	novelGene_ENSMUSG00000052456.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	57	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCTCACGTGATTAATCGG	NA	False	NA	NA	False	NA	NA	NA	85744557	85751902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85744887_85745152_85745550_85746152_85746304_85746389_85746673_85750796_85750960_85751739
57708	chr17	-	1703	10	ISM	ENSMUSG00000024170.16	ENSMUST00000024987.6	3434	21	140	6410	140	4847	5prime_fragment	FALSE	canonical	3	21	junction_9	24.6205775624004	3	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCCTCTCCATTCCCAG	NA	False	NA	NA	False	NA	NA	NA	25334739	25324960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334413
57709	chr2	+	933	2	Genic_Genomic	ENSMUSG00000083097.4	novel	435	1	NA	NA	-117	450	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTCTCGTTTACTTAAAA	NA	False	NA	NA	False	NA	NA	NA	153667973	153668975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_153668239_153668307
57711	chr2	+	1390	8	NIC	ENSMUSG00000027593.16	novel	1802	10	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	53.0813776484863	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	NA	False	NA	NA	NA	154633016	154709164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_154633152_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
57713	chr1	+	821	6	Antisense	novelGene_ENSMUSG00000043716.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGCCGGAAAAGAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	16171948	16174606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_16172161_16172712_16172822_16172913_16173044_16173382_16173558_16173731_16173909_16174588
57714	chr19	-	992	5	ISM	ENSMUSG00000024830.18	ENSMUST00000135911.8	1143	11	3978	-192	-200	1	3prime_fragment	FALSE	canonical	3	85	junction_4	14.8408220796558	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTGGCTTTTGCCGGAC	7751	False	NA	NA	False	NA	NA	NA	4208351	4206792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064
57716	chr19	-	418	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	-42	266	-42	-266	mono-exon	FALSE	NA	NA	NA	NA	NA	112	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAGGGTTCACATTGGC	NA	False	NA	NA	False	NA	NA	NA	37273237	37272819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_37272800_37273200
57717	chr3	-	937	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	-29	0	-29	0	multi-exon	FALSE	canonical	3	839	junction_3	34.2963554915096	2960	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	NA	False	NA	NA	NA	87965831	87963826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
57718	chr18	-	1737	2	NNC	ENSMUSG00000051316.9	novel	3302	2	NA	NA	28	-1534	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	95	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATGATGTTGTTCTATG	NA	False	NA	NA	False	NA	NA	NA	37777229	37775077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_37776579_37776993
57719	chr8	+	2620	6	ISM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	-6	-29	0	-7	intron_retention	TRUE	canonical	3	99	junction_2	7.57891812859857	48	64	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGAATGCTACTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	71858653	71862541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514_71860687_71861308_71861469_71861565
57720	chr12	-	1194	10	NNC	ENSMUSG00000021114.10	novel	3667	9	NA	NA	30	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	428.887651120839	17	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAACATGTTGTTTCTTT	-1	True	NA	NA	False	NA	NA	NA	78908382	78889763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_78889825_78890006_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896509_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
57721	chr2	-	3318	1	NIC	ENSMUSG00000027371.11	novel	1211	8	NA	NA	12	-790	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCATTTTCTTAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	127286458	127283140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_127283100_127286500
57722	chr9	+	2344	1	NIC	ENSMUSG00000032309.16	novel	2112	7	NA	NA	16	-9745	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	18	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCACCCACCCCTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	55116224	55118568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_55116200_55118600
57723	chr8	+	1658	5	Antisense	novelGene_ENSMUSG00000093087.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCACTCACAATCCAAACC	NA	False	NA	NA	False	NA	NA	NA	111729817	111758375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_111731174_111747650_111747730_111749034_111749084_111750594_111750647_111758253
57724	chr9	+	1258	10	NNC	ENSMUSG00000066705.8	novel	1789	8	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	419.573445946249	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGACTCTGAGTGGCTTT	632	False	NA	NA	False	NA	NA	NA	45281746	45307451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306777_45306973_45307264_45307327
57725	chr4	-	1167	7	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	-1	-12	intron_retention	FALSE	canonical	3	2123	junction_6	174.331102598857	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTATTTGTCCCAGTCAG	NA	False	NA	NA	False	NA	NA	NA	117744518	117741541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743343_117743472_117743557_117743786_117743836_117744366
57726	chr5	-	1480	7	Antisense	novelGene_ENSMUSG00000029152.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCGCTGCAGCAGAGCCCA	NA	False	NA	NA	False	NA	NA	NA	73464095	73450431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_73451352_73451625_73451690_73452267_73452350_73458006_73458059_73460932_73460979_73461886_73462027_73463919
57729	chr11	-	1732	2	Antisense	novelGene_ENSMUSG00000049299.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTACTAGACTCCGCCT	NA	False	NA	NA	False	NA	NA	NA	69216617	69214794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_69214892_69214982
57730	chr13	+	808	8	NNC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	-10	-138	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	448.747781530529	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTCTCTAACCATAATAA	NA	False	NA	NA	False	NA	NA	NA	85337585	85360886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_85337772_85338872_85338996_85350451_85350616_85354246_85354318_85356896_85357009_85359411_85359475_85359972_85360034_85360858
57733	chr7	-	2376	14	NIC	ENSMUSG00000019734.17	novel	2310	15	NA	NA	-12	-9	intron_retention	FALSE	canonical	3	9	junction_11	8.64281348011578	118	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAAGGCCGCTTTGCGTTT	5415	False	NA	NA	False	NA	NA	NA	3680535	3668798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
57734	chr8	-	1728	10	FSM	ENSMUSG00000031898.10	ENSMUST00000034371.9	1698	10	-37	7	-37	-7	multi-exon	FALSE	canonical	3	28	junction_5	8.79955105476592	116	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCCAAGTGTCTGAGCCCT	NA	False	NA	NA	False	NA	NA	NA	106706098	106700151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705471_106705645
57735	chr14	-	1971	11	ISM	ENSMUSG00000022218.17	ENSMUST00000002389.9	2791	15	2395	14	2395	1	3prime_fragment	FALSE	canonical	3	145	junction_10	27.7057755711693	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTTAGTAGTCCTG	3197	False	NA	NA	False	NA	NA	NA	55948150	55937489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924
57736	chr19	-	2123	10	NNC	ENSMUSG00000013662.7	novel	3771	10	NA	NA	3	-448	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	139.76408694654	1	122	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTGTTGTATCTGTAG	NA	False	NA	NA	False	NA	NA	NA	32689728	32650669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689678
57737	chr3	+	1301	4	NIC	ENSMUSG00000028140.14	novel	716	5	NA	NA	-1	414	intron_retention	FALSE	canonical	3	188	junction_3	31.4783876475414	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCTTGGTGTGGTGGTTG	8501	False	NA	NA	False	NA	NA	NA	94350642	94354562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_94350802_94350965_94351123_94351893_94352259_94353942
57738	chr5	+	1309	7	NNC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	-6	435	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	72.8346681799875	12	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTGTCAGTATATTC	NA	False	NA	NA	False	NA	NA	NA	123366314	123387025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_123366508_123372656_123372760_123377604_123377706_123377762_123377814_123379894_123379997_123384256_123384346_123386355
57739	chr1	-	4139	12	Antisense	novelGene_ENSMUSG00000048865.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	217	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCCCCGGGATCTCTGTC	9330	False	NA	NA	False	NA	NA	NA	171237778	171216828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171216931_171225040_171225145_171228128_171228267_171229499_171229570_171229719_171229831_171230778_171230906_171231344_171231522_171231602_171231705_171231787_171231866_171232376_171232748_171234911_171235213_171235320
57740	chr1	-	1720	11	NNC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	1798	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	59.7180039853979	1	51	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAAGCTTTATTAACTG	6138	False	NA	NA	False	NA	NA	NA	59157167	59139755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155099_59157133
57741	chr7	-	681	3	FSM	ENSMUSG00000030717.10	ENSMUST00000191192.2	570	3	-83	-28	48	-1	multi-exon	FALSE	canonical	3	22	junction_2	1863	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTTGGCGTGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	126224599	126222421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126222752_126224061_126224308_126224494
57742	chr16	-	2379	3	FSM	ENSMUSG00000052384.15	ENSMUST00000099991.11	2548	3	133	36	5	4	multi-exon	FALSE	canonical	2	4	junction_2	2.5	29	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGGTGTGCCTCATAAA	NA	False	NA	NA	False	NA	NA	NA	31984270	31961638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31963824_31966370_31966492_31984197
57743	chr4	-	1503	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	21	3	2	-3	multi-exon	FALSE	canonical	3	91	junction_4	13.5346776836392	330	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTCTGTCTGAGCTTTG	7	True	NA	NA	False	NA	NA	NA	46389416	46379866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
57745	chr6	-	944	6	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	71	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2386.41091180878	1	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471683	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125438188_125438249_125440647_125440723_125441352_125441451_125449371_125449475_125471536
57746	chr11	+	1204	9	NIC	ENSMUSG00000023170.15	novel	1220	10	NA	NA	83	-3	intron_retention	FALSE	canonical	3	266	junction_8	26.7850238006241	233	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATCATGCCTGAGTGCTG	4316	False	NA	NA	False	NA	NA	NA	69805100	69807413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69805260_69805577_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
57748	chr4	-	1398	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	12	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.779842021065	1	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACAGGAACTTCTTTTT	11	False	NA	NA	False	NA	NA	NA	41098171	41092732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093396_41093465_41093703_41093781_41093919_41094774_41094839_41095144_41095272_41098001
57749	chr2	-	1381	9	NNC	ENSMUSG00000068290.12	novel	1238	9	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	171.609112520285	10	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTTGTTGTTTGTAGA	NA	False	NA	NA	False	NA	NA	NA	130506058	130495954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130505655
57750	chr13	-	1611	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1160	-6	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	22.5	38	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATCCTCCTCCATCTT	NA	False	NA	NA	False	NA	NA	NA	98854178	98849587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98850076_98852942_98853093_98853205
57751	chr11	-	821	5	NIC	ENSMUSG00000020460.16	novel	791	6	NA	NA	-2	-3	intron_retention	FALSE	canonical	0	0	junction_2	5834.46507295228	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTAGTATTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	29497862	29495848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_29496030_29496290_29496789_29497205_29497261_29497680_29497746_29497840
57752	chr11	-	1840	4	ISM	ENSMUSG00000023764.19	ENSMUST00000138126.8	2916	22	6	49708	-4	928	5prime_fragment	FALSE	canonical	3	88	junction_2	10.2089285540757	156	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGACCAACACTTGCTT	8027	False	NA	NA	False	NA	NA	NA	3143415	3134639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_3136137_3137239_3137411_3138940_3139057_3143359
57753	chr9	+	1936	12	NNC	ENSMUSG00000015357.11	novel	2885	14	NA	NA	7572	-398	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	105.706986250431	1	62	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTGGGATCCCATTGTT	633	False	NA	NA	False	NA	NA	NA	65209185	65237541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231588_65234094_65234171_65237095
57754	chr7	+	1351	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	22	0	22	0	multi-exon	FALSE	canonical	2	31	junction_4	14.5134420452214	164	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	377	False	NA	NA	False	NA	NA	NA	43430480	43434834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
57756	chr9	-	1513	11	NNC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-23	-138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	189.935883918758	35	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTGTTGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	114469275	114415171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114460901_114461052_114461744_114461840_114468986
57759	chrX	+	664	1	Intergenic	novelGene_3927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAATCTCTGAGCTTGAGG	NA	False	NA	NA	False	NA	NA	NA	49721781	49722445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_49721800_49722400
57760	chr2	-	1257	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	-26	-3	-2	3	multi-exon	FALSE	canonical	3	71	junction_3	32.7210431781547	309	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATTTGATCCAAAAGCT	8849	False	NA	NA	False	NA	NA	NA	93841101	93810978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
57761	chr9	+	1028	9	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	127	junction_5	294.9804813458	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	NA	False	NA	NA	NA	20914197	20920127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918153_20918729_20918837_20918926_20919037_20919118_20919196_20919789
57762	chr11	-	768	7	ISM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	55	11694	-1	40	5prime_fragment	FALSE	canonical	3	653	junction_4	54.2168997843129	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAAGTATTGCTTAGCAA	NA	False	NA	NA	False	NA	NA	NA	76134496	76124029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
57763	chr10	+	1346	10	NIC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	-4	0	intron_retention	FALSE	canonical	3	1529	junction_7	1095.09905972806	33	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	128657796	128713498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
57764	chr5	+	2450	1	ISM	ENSMUSG00000097392.5	ENSMUST00000239420.2	9445	8	43405	3	10572	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	37	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACAGCTTGGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	104699620	104702070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_104699600_104702100
57765	chr15	-	1451	2	Antisense	novelGene_ENSMUSG00000022303.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACTTGCCCTATGACCT	NA	False	NA	NA	False	NA	NA	NA	39618451	39615286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_39615722_39617435
57766	chr19	+	1313	9	NIC	ENSMUSG00000080268.5	novel	1388	10	NA	NA	-14	-16	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	82.30545243178	15	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACCTGGGACCTTGGTGT	2749	False	NA	NA	False	NA	NA	NA	5091400	5099929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099434
57767	chr11	-	1618	4	FSM	ENSMUSG00000020288.14	ENSMUST00000128559.2	638	4	-63	-917	-28	917	multi-exon	FALSE	canonical	3	232	junction_2	31.2089730686545	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGAAAACAAGCTGCAGG	NA	False	NA	NA	False	NA	NA	NA	23447958	23442236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_23443394_23444978_23445065_23446690_23446882_23447774
57768	chr6	+	2578	10	FSM	ENSMUSG00000034245.11	ENSMUST00000041736.11	2653	10	58	17	58	-17	multi-exon	FALSE	canonical	3	7	junction_9	4.60541817245838	70	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATCCAGACACTTAACCA	NA	False	NA	NA	False	NA	NA	NA	91133704	91151657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_91133830_91134378_91134528_91136142_91136244_91142542_91142660_91143224_91143268_91144785_91144863_91145790_91145854_91146376_91146474_91149146_91149326_91150030
57770	chr10	+	595	4	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	3704	15	-1834	5prime_fragment	TRUE	canonical	3	6189	junction_1	315.456283289249	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTCTACCAGACCTTC	2196	False	NA	NA	False	NA	NA	NA	81012479	81014628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514
57771	chr15	+	2754	1	ISM	ENSMUSG00000047888.11	ENSMUST00000067689.9	17332	25	223051	3968	11300	-3968	mono-exon	FALSE	NA	NA	NA	NA	NA	12	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTAGTTTAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	80818564	80821318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_80818600_80821300
57774	chr10	-	2184	16	NIC	ENSMUSG00000001120.16	novel	2013	16	NA	NA	-33	-27	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	33.9616777494216	277	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTTAATAAATGTCGTG	1104	False	NA	NA	False	NA	NA	NA	76797754	76597720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620904_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
57775	chr6	+	3783	9	Intergenic	novelGene_4275	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATCACAGCCAACAA	NA	False	NA	NA	False	NA	NA	NA	148892693	148918610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_148895387_148899753_148899930_148901418_148901548_148902100_148902180_148906663_148906855_148908226_148908345_148911254_148911399_148915613_148915735_148918478
57776	chr3	+	2039	12	Intergenic	novelGene_3156	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	61	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCAACTCCGAGGTCCC	NA	False	NA	NA	False	NA	NA	NA	94521129	94566114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_94522132_94523076_94523161_94523928_94524033_94529355_94529457_94529996_94530117_94535495_94535623_94539908_94539972_94541766_94541853_94542711_94542797_94546226_94546333_94546700_94546780_94566032
57777	chr8	+	691	5	ISM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	25907	9447	-918	162	internal_fragment	FALSE	canonical	3	1011	junction_2	6.21992765231236	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTGGCCCATCACCTCG	NA	False	NA	NA	False	NA	NA	NA	106963474	106969979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926
57778	chr7	-	1144	7	NNC	ENSMUSG00000019370.11	novel	2290	6	NA	NA	-140	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	904.017453125522	2592	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGACTCTTCCGTCTG	NA	False	NA	NA	False	NA	NA	NA	16657894	16649303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_16649604_16650604_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
57779	chr7	-	2543	20	NNC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	-26	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	437.563779284607	1	156	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCCGCGACCTGAGACC	6998	False	NA	NA	False	NA	NA	NA	126101516	126091330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126091490_126092724_126092847_126092932_126093052_126093310_126093502_126093598_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126095004_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126101451
57780	chr11	+	1165	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	188	junction_5	206.095705923243	982	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	96679960	96698975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
57781	chrX	+	2011	8	NIC	ENSMUSG00000031154.16	novel	2471	9	NA	NA	22	1	combination_of_known_splicesites	FALSE	canonical	2	2	junction_7	160.489811489193	1	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGCAACTCTATTCTGTG	NA	False	NA	NA	False	NA	NA	NA	7708866	7741525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740468
57782	chr15	-	2569	7	FSM	ENSMUSG00000062373.9	ENSMUST00000072113.6	3747	7	651	527	651	-527	multi-exon	FALSE	canonical	3	142	junction_6	14.2087609906314	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGATACTTCGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	58694728	58654644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_58656860_58658958_58659065_58661234_58661278_58662003_58662059_58666190_58666259_58669049_58669095_58694691
57783	chr10	+	2507	10	Intergenic	novelGene_3424	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCAGGACGCGGAGCGGGG	NA	False	NA	NA	False	NA	NA	NA	34179606	34294531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_34180978_34186298_34186462_34189575_34189740_34190747_34190865_34198604_34198702_34200282_34200459_34275733_34275813_34283529_34283603_34287363_34287456_34294356
57784	chr6	+	2307	1	NIC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	343	-189	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCTGACAGGTACACTGC	NA	False	NA	NA	False	NA	NA	NA	72581698	72584005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72581700_72584000
57785	chr11	+	1223	6	FSM	ENSMUSG00000020812.19	ENSMUST00000139934.8	865	6	-360	2	-304	1	multi-exon	FALSE	canonical	3	112	junction_5	27.7632851082144	800	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGGTAGCATTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	116562125	116566622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
57787	chr9	+	1166	8	NNC	ENSMUSG00000032478.15	novel	865	6	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	278.409476732912	15	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGCTGGCAGTACTCC	NA	False	NA	NA	False	NA	NA	NA	109662104	109672026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109662150_109662263_109662364_109662637_109662751_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
57788	chr11	-	615	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	252	-6	206	6	multi-exon	FALSE	canonical	3	9692	junction_2	172	48	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGGTTTGCACTTG	NA	False	NA	NA	False	NA	NA	NA	70545218	70542669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
57789	chr1	+	1999	2	FSM	ENSMUSG00000044337.6	ENSMUST00000065587.5	3065	2	39	1027	13	-1027	multi-exon	FALSE	canonical	3	47	junction_1	0	119	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATGTGTGCTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	90131740	90143446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_90131810_90141516
57790	chr4	-	3089	5	ISM	ENSMUSG00000028957.13	ENSMUST00000138052.8	3663	7	3542	-120	3542	-14	3prime_fragment	FALSE	canonical	0	0	junction_1	0.433012701892219	14	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAGTGGAGAATGCTCT	NA	False	NA	NA	False	NA	NA	NA	151097060	151088122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_151090417_151092684_151092836_151093706_151093891_151094858_151094956_151096697
57791	chrM	+	791	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	680	111	680	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACGAAAGGACAAGAGAAAT	159	False	NA	-47	True	NA	NA	NA	1773	2564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1800_2600
57792	chr17	+	1080	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	0	-1	0	1	multi-exon	FALSE	canonical	3	194	junction_2	26.3772629360971	870	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGGCCCGTTGGCTTC	908	False	NA	NA	False	NA	NA	NA	24851655	24857812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
57793	chr1	+	1009	6	Antisense	novelGene_ENSMUSG00000040225.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCCAAGAAGGAGGAGGG	NA	False	NA	NA	False	NA	NA	NA	162537176	162543250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162537256_162537851_162538399_162540872_162540926_162541810_162541957_162542960_162543052_162543157
57794	chr2	-	1552	9	FSM	ENSMUSG00000027082.16	ENSMUST00000028487.10	1492	9	-64	4	-64	-4	multi-exon	FALSE	canonical	3	41	junction_8	57.5972004527998	654	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGCAATCATGTTGACT	NA	False	NA	NA	False	NA	NA	NA	84304582	84263207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286
57795	chr4	+	2603	1	Antisense	novelGene_ENSMUSG00000003282.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTTATTTCATATATCC	NA	False	NA	NA	False	NA	NA	NA	3898805	3901408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_3898800_3901400
57796	chr4	+	1458	1	Antisense	novelGene_ENSMUSG00000003282.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTTGCAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	3901865	3903323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_3901900_3903300
57798	chr5	+	1610	3	FSM	ENSMUSG00000039754.11	ENSMUST00000136634.8	557	3	53	-1106	-3	3	multi-exon	FALSE	canonical	3	9	junction_1	26.5	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTCCTTTTCCCATCCC	NA	False	NA	NA	False	NA	NA	NA	136165052	136170472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136165149_136168315_136168390_136169032
57799	chr10	-	1752	8	NIC	ENSMUSG00000035781.15	novel	1898	8	NA	NA	24	-5	intron_retention	FALSE	canonical	3	6	junction_7	58.1177551991451	280	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGAGTCCTGTCCCCGTGT	9793	False	NA	NA	False	NA	NA	NA	79752729	79745890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749516_79752656
57800	chr8	+	629	1	FSM	ENSMUSG00000050930.6	ENSMUST00000053078.5	3542	1	1145	1768	1145	-1768	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGTCAAGCACAACTAAAGA	NA	False	NA	NA	False	NA	NA	NA	126397701	126398330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_126397700_126398300
57801	chr2	+	2747	1	ISM	ENSMUSG00000050530.15	ENSMUST00000115099.9	4149	8	106678	0	106375	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTTTATTCTGATTCA	NA	False	NA	NA	False	NA	NA	NA	3226096	3228843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_3226100_3228800
57802	chr14	-	1852	10	NNC	ENSMUSG00000021982.15	novel	1892	10	NA	NA	-1	-24	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	38.8472793270148	219	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTATCTCCTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	59835396	59805201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59805469_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
57805	chr12	+	2301	5	NNC	ENSMUSG00000048833.10	novel	2155	6	NA	NA	23	1424	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	48.1611876929961	1	106	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTGTATAATACTGTATT	NA	False	NA	NA	False	NA	NA	NA	80713308	80728073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80713510_80719999_80720069_80722622_80722709_80723905_80724036_80726258
57806	chr14	-	2103	1	ISM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	18526	18	13712	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	26	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTATTTTGTATCTAATG	NA	False	NA	NA	False	NA	NA	NA	70024559	70022456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70022500_70024600
57808	chr5	-	3073	12	ISM	ENSMUSG00000046985.12	ENSMUST00000199374.5	3372	13	22366	18	92	-18	3prime_fragment	FALSE	canonical	3	70	junction_1	9.72599821726871	33	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATCTTTTTTAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	44361593	44332518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_44334525_44336202_44336364_44340039_44340117_44341922_44341992_44342296_44342357_44343573_44343684_44345960_44346042_44349422_44349493_44349708_44349807_44350528_44350665_44351589_44351753_44361551
57809	chr1	+	642	5	NNC	ENSMUSG00000025967.17	novel	681	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1440.68653339302	11	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63217642_63217725_63217990_63218058_63218406_63218533_63218616
57810	chr7	-	3282	6	NIC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	49	-8	intron_retention	FALSE	canonical	3	35	junction_1	5.03587132480567	3	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCGTATCATGTGGATTC	NA	False	NA	NA	False	NA	NA	NA	23999013	23990471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_23991930_23992769_23992860_23994379_23995450_23996997_23997164_23997698_23997801_23998617
57811	chr11	-	1055	6	NNC	ENSMUSG00000018761.15	novel	1321	7	NA	NA	-3	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	250.848958538799	8	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTAATTGTACAAAATTG	6813	False	NA	NA	False	NA	NA	NA	69553416	69547539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69548065_69548546_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
57812	chr7	+	1579	1	NIC	ENSMUSG00000011267.9	novel	1530	3	NA	NA	1247	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCTGGACTTTCTTGGG	2516	False	NA	NA	False	NA	NA	NA	19313000	19314579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_19313000_19314600
57814	chr15	+	1895	15	Intergenic	novelGene_3206	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	25	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTTGCTTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	7902537	8112052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_7902735_7913761_7913927_7915045_7915163_7916809_7916889_7918555_7918658_7949967_7950106_7951548_7951634_7953687_7953791_8006449_8006624_8049069_8049146_8065210_8065366_8072191_8072328_8075914_8075973_8108643_8108843_8111941
57818	chr17	+	993	1	NIC	ENSMUSG00000090952.3	novel	925	2	NA	NA	9	-877	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGGATCAGACTATACCT	3486	False	NA	NA	False	NA	NA	NA	33978974	33979967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_33979000_33980000
57819	chr16	-	962	9	ISM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	283300	10	283230	-10	3prime_fragment	FALSE	canonical	3	200	junction_5	23.459739448681	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTGAGCAGACAGTTTC	NA	False	NA	NA	False	NA	NA	NA	57143909	57122372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826
57820	chrX	+	2403	2	FSM	ENSMUSG00000054850.5	ENSMUST00000068106.5	2393	2	-15	5	-15	-5	multi-exon	FALSE	canonical	3	59	junction_1	0	53	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAACACATCCTGGCTGCC	NA	False	NA	NA	False	NA	NA	NA	55419930	55423154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_55420569_55421389
57821	chr3	+	1427	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	26	3	-7	-3	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	319	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTATGGCACTCTGAG	NA	False	NA	NA	False	NA	NA	NA	129695099	129707749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
57824	chr7	-	846	10	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-10	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	871.718354108074	23	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875312	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113863951_113865739_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
57825	chr1	-	519	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	162	-27	162	27	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033601	65033082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033600
57826	chr8	-	1289	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	257	379	3	-379	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTTATCTCCCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	46664064	46660212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
57827	chr5	+	1143	6	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	238.316931836578	1102	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	124254156	124256259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124254352_124254405_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
57828	chr2	-	897	1	FSM	ENSMUSG00000081400.2	ENSMUST00000119790.2	793	1	-24	-80	-24	80	mono-exon	FALSE	NA	NA	NA	NA	NA	4	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAAGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83184317	83183420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_83183400_83184300
57829	chr1	-	2399	22	NNC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	71	-772	intron_retention	FALSE	canonical	0	0	junction_20	47.1991486913504	1	64	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAAACGGGACCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	183126886	183108453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_183108509_183109058_183109201_183110440_183110513_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119788_183120019_183120127_183125670_183125807_183126628
57830	chr14	-	3813	30	NNC	ENSMUSG00000059456.14	novel	3863	30	NA	NA	10	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	4.88901800235471	30	64	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTACCATTTGCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	66450991	66390729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66391719_66393420_66393502_66393738_66393877_66394509_66394557_66395496_66395522_66395832_66395869_66395979_66396127_66400473_66400600_66402712_66402779_66404115_66404225_66406691_66406897_66407686_66407777_66407932_66408034_66409131_66409248_66409507_66409609_66409924_66410010_66410754_66410853_66411286_66411338_66412197_66412245_66412621_66412662_66413072_66413191_66414511_66414614_66415140_66415216_66415484_66415617_66416040_66416096_66416279_66416343_66424891_66424964_66427022_66427111_66427504_66427684_66450760
57831	chr2	-	980	1	Intergenic	novelGene_2661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGCAAACACAGAAGTGGA	NA	False	NA	NA	False	NA	NA	NA	76219907	76218927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_76218900_76219900
57832	chr12	-	1165	7	Antisense	novelGene_ENSMUSG00002075882.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	31	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAACTTCCGGCTCCTCCTC	NA	False	NA	NA	False	NA	NA	NA	87320754	87313460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_87313693_87314925_87315127_87316652_87316728_87317107_87317217_87319892_87319996_87320217_87320272_87320363
57833	chr4	+	4634	23	FSM	ENSMUSG00000006386.16	ENSMUST00000071168.6	4176	23	-209	-249	9	-8	multi-exon	TRUE	canonical	1	2	junction_15	3.26672429251472	7	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACACTCTTCCCAGGA	290	False	NA	NA	False	NA	NA	NA	94627545	94763168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_94627930_94669052_94669365_94686847_94686959_94687363_94687517_94692521_94692654_94693049_94693191_94699524_94699654_94708320_94708473_94715492_94715638_94715906_94716063_94718120_94718256_94725353_94725642_94737857_94738158_94739959_94740112_94741605_94741817_94743558_94743670_94747124_94747316_94747807_94747922_94751849_94751921_94752841_94752883_94753659_94753757_94761278_94761379_94762160
57834	chr11	+	563	1	ISM	ENSMUSG00000050910.6	ENSMUST00000053288.6	3700	5	13512	142	13512	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATGGGGAGGAATTCAGG	8828	False	NA	NA	False	NA	NA	NA	115286253	115286816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_115286300_115286800
57836	chr7	-	1242	6	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	0	-12	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	89.0999438832595	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTATAAAAACTTGGCAT	NA	False	NA	NA	False	NA	NA	NA	140461782	140443594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140443997_140444887_140445098_140456266_140456368_140457562_140457796_140457869_140458059_140461675
57837	chr4	+	1075	5	NNC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	265.502354038528	37	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8245	False	NA	NA	False	NA	NA	NA	101504944	101516561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034_101515583_101516375
57838	chr14	+	1670	3	ISM	ENSMUSG00000021957.8	ENSMUST00000223717.2	1619	13	7973	12991	-279	27	internal_fragment	FALSE	canonical	3	1855	junction_2	135	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGCTGCTTGCGGGATGG	NA	False	NA	NA	False	NA	NA	NA	30279286	30282590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30280796_30281708_30281823_30282543
57839	chr5	+	1403	1	NIC	ENSMUSG00000029234.14	novel	1897	6	NA	NA	2492	-1231	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGATCTCTGTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	76354458	76355861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_76354500_76355900
57840	chr7	-	1833	8	NIC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	-1	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	16.2819544532076	2	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATGATTTCAGAATAAGA	NA	False	NA	NA	False	NA	NA	NA	79973902	79966503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79969962_79970049_79970447_79970609_79970930_79973497
57841	chr2	+	2770	18	NIC	ENSMUSG00000039205.17	novel	2973	18	NA	NA	34	0	intron_retention	FALSE	canonical	2	4	junction_1	28.3736804793569	146	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTCCCCACCAGCACTG	NA	False	NA	NA	False	NA	NA	NA	32253106	32268311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32253171_32253634_32253669_32253816_32253992_32254230_32254347_32255814_32255887_32257314_32257545_32260043_32260138_32260253_32260357_32260875_32261421_32261647_32261770_32262309_32262508_32264353_32264479_32265496_32265585_32266020_32266135_32266277_32266440_32267304_32267375_32267520_32267643_32267975
57842	chr6	-	1650	1	Intergenic	novelGene_4159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCAATTACCAAAAATAAAC	NA	False	NA	NA	False	NA	NA	NA	47444386	47442736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_47442700_47444400
57843	chr11	-	2366	10	FSM	ENSMUSG00000041798.16	ENSMUST00000102920.4	2727	10	364	-3	364	0	multi-exon	FALSE	canonical	1	1	junction_2	1.4142135623731	31	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCCTGCTGATTGTTCT	NA	False	NA	NA	False	NA	NA	NA	5899717	5850819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5851815_5852084_5852319_5853099_5853256_5854360_5854545_5856476_5856577_5856682_5856779_5859082_5859203_5860277_5860433_5860861_5861025_5899554
57844	chrX	+	2763	6	FSM	ENSMUSG00000031365.14	ENSMUST00000033731.4	6376	6	54	3559	54	-3559	multi-exon	FALSE	canonical	3	12	junction_2	13.9226434271657	13	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAGCACCAGAAACAGGG	NA	False	NA	NA	False	NA	NA	NA	72386280	72399127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72386358_72388442_72388519_72394874_72394967_72395414_72395530_72396441_72396544_72396826
57845	chr7	+	3874	20	ISM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	51361	7031	51361	469	3prime_fragment	FALSE	canonical	2	11	junction_4	3.46170182155902	13	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGACATGGGCCTCTGC	6359	False	NA	NA	False	NA	NA	NA	67653935	67876385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_67654104_67814740_67815054_67819644_67819797_67822978_67823124_67833091_67833307_67834478_67834606_67836737_67836977_67839320_67839489_67839693_67839899_67843094_67843379_67844716_67844854_67845337_67845498_67850991_67851095_67851649_67851721_67856998_67857229_67857510_67857622_67861741_67861905_67864666_67864797_67868149_67868285_67875767
57847	chr6	-	2489	1	Antisense	novelGene_ENSMUSG00000015733.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATACTGTGCAAATGCAC	NA	False	NA	NA	False	NA	NA	NA	17656612	17654123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_17654100_17656600
57849	chr16	-	1337	11	NIC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_6	148.536325523422	912	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	4831409	4826593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828761_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
57850	chr8	+	1607	2	NNC	ENSMUSG00000037492.17	novel	4182	7	NA	NA	115442	-1844	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	18	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTCAATTCTGCTGTAA	NA	False	NA	NA	False	NA	NA	NA	24534510	24551277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_24534602_24549761
57851	chr8	+	1232	1	ISM	ENSMUSG00000037492.17	ENSMUST00000042352.11	4182	7	392209	7	132814	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACGAATCTGTATGTAAAT	NA	False	NA	NA	False	NA	NA	NA	24551882	24553114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_24551900_24553100
57852	chr9	-	1212	1	ISM	ENSMUSG00000033453.9	ENSMUST00000065112.7	5928	8	22084	2	9289	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATCTTGTGTCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	30811664	30810452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_30810500_30811700
57854	chr12	+	1954	10	NNC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	152.42338694862	24	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	NA	False	NA	NA	NA	87193929	87211497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87194283_87194546_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
57855	chr6	-	2755	5	ISM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	736	49	681	-49	3prime_fragment	FALSE	canonical	3	526	junction_1	53.5397048927242	4	111	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCGCCTGGCCCATGGA	NA	False	NA	NA	False	NA	NA	NA	83752059	83745915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999
57856	chr5	+	1277	7	FSM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	-314	3	0	2	multi-exon	FALSE	canonical	3	250	junction_6	22.1108319357027	950	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGCCGTACCTGTGC	594	False	NA	NA	False	NA	NA	NA	31205664	31211964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
57857	chr18	-	2181	12	NNC	ENSMUSG00000117679.2	novel	2067	13	NA	NA	-114	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	19.540591361159	41	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	NA	False	NA	NA	NA	36812533	36804206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809537_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
57859	chrX	+	1157	6	NNC	ENSMUSG00000015217.12	novel	1743	5	NA	NA	46	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	379.422719404097	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAACTGTTCTGTATT	NA	False	NA	NA	False	NA	NA	NA	70599641	70604249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272_70603608_70604052
57860	chr17	-	2669	13	NNC	ENSMUSG00000023931.6	novel	2661	13	NA	NA	-1	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	11.5866302262565	46	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTGGTTTTGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	53770350	53705912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_53706148_53707773_53707956_53708462_53708679_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
57861	chr9	+	2539	16	Antisense	novelGene_ENSMUSG00000057969.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTCTGCCCCAGGATCT	NA	False	NA	NA	False	NA	NA	NA	107475452	107482336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_107476377_107476777_107476916_107477001_107477060_107477151_107477307_107477528_107477570_107477651_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480192_107480319_107480414_107480494_107480619_107481005_107481054_107482284
57862	chr7	+	3069	3	FSM	ENSMUSG00000051041.9	ENSMUST00000120990.2	1685	3	10	-1394	10	1394	multi-exon	FALSE	canonical	2	7	junction_1	2.5	49	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCCTGCTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	107166662	107191695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_107167102_107170243_107170533_107189354
57863	chr9	-	1594	5	NNC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1738	-11	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	45.3176290200624	167	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGCCACACACTGTGTC	NA	False	NA	NA	False	NA	NA	NA	20789285	20785114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20788582
57864	chr19	-	1395	8	NNC	ENSMUSG00000010095.14	novel	1393	8	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1102.88863759619	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACATCACCCCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	8690351	8684954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686589_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
57865	chr2	-	1255	6	NIC	ENSMUSG00000032869.16	novel	3809	7	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	130.314389075037	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTTCCACGCTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	151583213	151560185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151577393_151577547_151582930
57866	chr17	+	2187	8	FSM	ENSMUSG00000062327.11	ENSMUST00000074667.9	2046	8	-148	7	-148	-7	multi-exon	FALSE	canonical	3	22	junction_5	7.70634511957782	73	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGTCTTTGTGGATTA	NA	False	NA	NA	False	NA	NA	NA	8653106	8661321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657447_8657622_8658741_8658872_8660424
57868	chr9	-	803	4	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	-138	-6	at_least_one_novel_splicesite	FALSE	canonical	3	3484	junction_1	82858.6360227801	128	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAATGTGCGTCGTCATT	NA	False	NA	NA	False	NA	NA	NA	78275597	78274339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78274577_78274796_78274849_78275002_78275186_78275266
57869	chr6	+	2340	17	ISM	ENSMUSG00000030323.14	ENSMUST00000038234.13	4056	29	76	20488	18	6583	5prime_fragment	FALSE	canonical	3	30	junction_5	11.1460475057305	1	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTGAGACAGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	115830566	115883163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755
57870	chr11	+	1747	5	NIC	ENSMUSG00000020733.4	novel	1925	6	NA	NA	1	-23	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	61.7130456224614	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGGTTCCTTCAAAGCG	NA	False	NA	NA	False	NA	NA	NA	115054167	115071984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115054778_115067176_115067339_115069875_115069917_115070832_115070923_115071140
57872	chr14	-	1022	6	NNC	ENSMUSG00000022108.9	novel	1796	6	NA	NA	31	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	314.148627245131	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAACAAAACCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	73622698	73600331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605843_73622501
57873	chr8	-	1083	10	NNC	ENSMUSG00000031708.18	novel	1120	12	NA	NA	10	0	intron_retention	FALSE	non_canonical	0	0	junction_4	1614.25992675006	3	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321084	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299088_84299365_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
57874	chr12	+	840	7	NNC	ENSMUSG00000059060.16	novel	1759	8	NA	NA	12	-181250	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	21.6365174852352	172	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTCCCTTTTCCTTCTT	8725	False	NA	NA	False	NA	NA	NA	79344136	79374180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_79344197_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994
57875	chr8	+	1317	5	NNC	ENSMUSG00000037296.8	novel	2663	4	NA	NA	6	404	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	192.3856803403	52	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAAATGGAGTTTCTG	8446	False	NA	NA	False	NA	NA	NA	26275321	26292556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_26275746_26282184_26282254_26283704_26283821_26286980_26287088_26291955
57876	chr2	+	2036	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	31	13	7	0	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	1	116	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	NA	False	NA	NA	NA	28358108	28361177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
57877	chr12	-	2626	5	FSM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	34	2	34	-2	multi-exon	FALSE	canonical	3	55	junction_3	5.24404424085076	46	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTTTGGTTCATTTCC	NA	False	NA	NA	False	NA	NA	NA	54250612	54225768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_54227442_54228416_54228491_54230665_54230803_54232326_54232447_54249990
57878	chr5	-	2771	10	ISM	ENSMUSG00000005107.14	ENSMUST00000067886.12	3602	12	27146	362	-12331	4	3prime_fragment	TRUE	canonical	1	2	junction_4	3.97523195999963	22	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTCTGCCTTGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	38610503	38506977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_38508681_38520185_38520314_38537260_38537337_38539385_38539488_38549056_38549168_38556044_38556233_38574517_38574651_38593882_38594029_38597992_38598118_38610444
57879	chr1	+	3683	1	Genic_Genomic	ENSMUSG00000026575.16	novel	NA	NA	NA	NA	-5	-3912	mono-exon	FALSE	NA	NA	NA	NA	NA	8	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTCACCTTCGTTCCA	7379	False	NA	NA	False	NA	NA	NA	164200832	164204515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_164200800_164204500
57880	chrX	+	1555	2	Antisense	novelGene_ENSMUSG00000031352.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACAAGGACACTCACTGAA	NA	False	NA	NA	False	NA	NA	NA	168094536	168096655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_168096021_168096584
57884	chr8	+	206	1	ISM	ENSMUSG00000013033.17	ENSMUST00000141158.8	8181	23	39659	1985	2109	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGGAAAAGGAAAAAAAAAA	1274	False	NA	NA	False	NA	NA	NA	84666392	84666598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84666400_84666600
57885	chr2	-	1358	1	Intergenic	novelGene_2681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTCATCCTCAGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	109146837	109145479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_109145500_109146800
57888	chr5	-	3293	16	NNC	ENSMUSG00000072720.10	novel	8280	44	NA	NA	-26326	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	1.99332218503014	7	10	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGAGTCTGTGTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	112940123	112836747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_112836964_112839961_112841202_112863246_112863385_112864852_112864898_112871672_112871804_112905320_112905507_112908181_112908320_112909189_112909274_112910522_112910640_112912313_112912428_112923118_112923272_112930450_112930556_112933422_112933534_112937855_112938057_112938942_112939067_112939933
57889	chr1	-	966	5	Antisense	novelGene_ENSMUSG00000103046.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	96	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGCTCCTCCTTCTCCG	NA	False	NA	NA	False	NA	NA	NA	39035727	39030440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_39030456_39033994_39034086_39034324_39034469_39034814_39035024_39035220
57890	chr2	-	1518	14	NNC	ENSMUSG00000026767.13	novel	2316	15	NA	NA	7	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	45.5758682123951	1	38	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTTTAAGATACGTTTA	NA	False	NA	NA	False	NA	NA	NA	12424195	12352738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408966_12414811_12414892_12423969
57894	chr5	+	827	1	Intergenic	novelGene_867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATCAATAAAAGTCTCTG	5286	False	NA	NA	False	NA	NA	NA	136973221	136974048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_136973200_136974000
57895	chr7	-	1512	7	NNC	ENSMUSG00000030605.16	novel	2125	10	NA	NA	-2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	457.511171691165	2	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCACTGGACCCTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	78798810	78783525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792202_78795449_78795493_78798642
57896	chrX	+	2034	12	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	67	1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	75.8230868262943	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATTTATGACTTGACCT	3849	False	NA	NA	False	NA	NA	NA	7588298	7594422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7588470_7589553_7589993_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
57897	chrX	-	2277	6	NNC	ENSMUSG00000031137.18	novel	2499	5	NA	NA	-47	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	30.9127805284481	3	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTCATTCAAAGAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	58179843	58107520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236_58179472_58179724
57898	chr9	+	3341	6	FSM	ENSMUSG00000070305.11	ENSMUST00000114664.8	3424	6	48	35	25	-35	multi-exon	FALSE	canonical	3	16	junction_2	3.70944739819828	6	113	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGTAGTTAATAAACTTC	NA	False	NA	NA	False	NA	NA	NA	44966531	44988699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44966617_44973338_44973506_44977636_44977848_44979504_44979671_44981953_44982018_44986051
57899	chr17	-	2257	5	NIC	ENSMUSG00000023973.14	novel	1908	6	NA	NA	3	-12	intron_retention	FALSE	canonical	3	416	junction_3	46.8268085609088	18	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATAACTGTAATTTTGC	NA	False	NA	NA	False	NA	NA	NA	47063118	47046693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_47047835_47048100_47048776_47054111_47054209_47058346_47058471_47062898
57900	chr19	-	1047	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	-42	-6	1	0	multi-exon	FALSE	canonical	3	133	junction_8	339.490035752156	799	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5823	False	NA	NA	False	NA	NA	NA	46327098	46318978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
57905	chr16	-	595	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	-43	-56	-43	56	mono-exon	FALSE	NA	NA	NA	NA	NA	18	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	20641433	20640838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20640800_20641400
57906	chr13	-	978	7	FSM	ENSMUSG00000006715.12	ENSMUST00000110382.9	963	7	-15	0	-15	0	multi-exon	FALSE	canonical	3	1483	junction_6	81.6382603658086	5506	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	NA	False	NA	NA	NA	24945921	24935827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
57907	chr8	-	2709	2	Intergenic	novelGene_1727	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_1	0	122	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTGCCTTGGTCGTGGT	NA	False	NA	NA	False	NA	NA	NA	108408873	108404230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_108406856_108408789
57908	chr1	-	1399	13	NIC	ENSMUSG00000057363.13	novel	4620	15	NA	NA	3	-333	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	73.0277724948225	2	26	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTACACTATGCATAAA	NA	False	NA	NA	False	NA	NA	NA	43866919	43789004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43810840_43810963_43813976_43814037_43819224_43819330_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
57909	chr17	-	1193	9	NNC	ENSMUSG00000019578.12	novel	2949	11	NA	NA	44	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	86.4244612363884	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACTGTGGCTCCAGTCTC	6361	False	NA	NA	False	NA	NA	NA	56381973	56375538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377973_56380072_56380237_56381835
57910	chr12	-	2564	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	3	-3	3	3	multi-exon	FALSE	canonical	3	170	junction_1	5	689	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACAGCACTCTATGCCA	NA	False	NA	NA	False	NA	NA	NA	52053281	52044286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_52046657_52051661_52051732_52053157
57913	chrX	+	2042	10	NNC	ENSMUSG00000041658.13	novel	2258	11	NA	NA	41	18231	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_9	101.125884146664	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATTGCAAAAAAAAAAAACA	3223	False	NA	NA	False	NA	NA	NA	151923023	151973170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_151923572_151924359_151924394_151926971_151927072_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151972527
57914	chrX	+	988	5	NNC	ENSMUSG00000031353.14	novel	1430	10	NA	NA	-1	39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1307.16735730357	54	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543456	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552823_161561404
57915	chr17	-	1595	8	NIC	ENSMUSG00000056121.17	novel	1939	8	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	1	8	junction_1	98.8728311251067	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	78725532	78685313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_78685859_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
57916	chr8	-	1907	11	NIC	ENSMUSG00000040263.17	novel	2078	12	NA	NA	-11	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	60.1212108993157	1	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTAAGGTTTTCTTTCTTC	485	False	NA	NA	False	NA	NA	NA	122556259	122523074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122548018_122548098_122548520_122548613_122556120
57917	SIRV7	-	737	5	NNC	SIRV7A	novel	889	6	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	2066.85127367694	7	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_56098_70883_70988_78841_78964_114686_114824_147648
57918	chr7	+	1722	4	Antisense	novelGene_ENSMUSG00000041328.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTGCATAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92310259	92315260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_92311288_92312672_92312865_92313174_92313362_92314945
57919	chr13	+	1181	2	FSM	ENSMUSG00000044164.3	ENSMUST00000059986.3	3544	2	327	2036	54	843	multi-exon	FALSE	canonical	0	0	junction_1	0	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAGAAAAAAATAAAAATAAA	3971	False	NA	NA	False	NA	NA	NA	43769512	43822385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_43769544_43821235
57920	chr13	+	1905	1	ISM	ENSMUSG00000044164.3	ENSMUST00000059986.3	3544	2	53330	1	53057	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCATGGTTCCCCTGATT	NA	False	NA	NA	False	NA	NA	NA	43822515	43824420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_43822500_43824400
57921	chr2	+	2192	6	NNC	ENSMUSG00000005804.15	novel	3484	5	NA	NA	30	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	68.1363339195763	1	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGACGAAGGCTGGCGATT	8355	False	NA	NA	False	NA	NA	NA	122580508	122590014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_122580625_122580903_122581079_122584508_122584651_122586045_122586134_122587974_122588062_122588430
57922	chr8	-	1077	5	NIC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	-16	-7123	intron_retention	FALSE	canonical	3	617	junction_3	21.5334042826489	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTACAATGTACCCTAC	NA	False	NA	NA	False	NA	NA	NA	110419908	110405527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
57923	chr14	+	1752	9	FSM	ENSMUSG00000022037.16	ENSMUST00000022616.14	1810	9	56	2	56	-2	multi-exon	TRUE	canonical	3	13	junction_1	2.72717802865893	61	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCCTTGGGTCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	66205987	66218994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_66206138_66209180_66209302_66210773_66210923_66212291_66212463_66213029_66213442_66214354_66214460_66217099_66217330_66218302_66218479_66218756
57924	chr2	-	1898	6	NIC	ENSMUSG00000057234.10	novel	1894	6	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	18.3891272223561	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	109111055	108922641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109110953
57926	chr5	+	1466	10	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	89.5599668061628	2	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	135398846	135404997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402889_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
57927	chr9	+	3244	17	NNC	ENSMUSG00000035382.10	novel	3876	17	NA	NA	-8	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	11.0785547342602	8	57	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACATTTTGTTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	45818274	45840953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45818338_45819825_45819950_45820557_45821035_45821672_45821713_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
57928	chr2	-	667	2	Genic_Genomic	ENSMUSG00000081406.5	novel	750	1	NA	NA	-32	24	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACCTTGAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	75022198	75021392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_75021680_75021818
57929	chr13	+	1779	7	Antisense	novelGene_ENSMUSG00000099096.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCGCTCTGACCCCGCCT	926	False	NA	NA	False	NA	NA	NA	55653862	55661237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_55653985_55654121_55655180_55655300_55655438_55656020_55656165_55656704_55656859_55660125_55660234_55661181
57930	chr7	-	2093	13	Fusion	ENSMUSG00000030788.17_ENSMUSG00000110062.2	novel	647	3	NA	NA	-6219	-1497	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCCCCTCAAAGTCCGG	NA	False	NA	NA	False	NA	NA	NA	110407025	110367380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_110367587_110377005_110377229_110387814_110388017_110390386_110390552_110392843_110393067_110394885_110395021_110399855_110400050_110401644_110401769_110402285_110402452_110402933_110403063_110404029_110404194_110405168_110405290_110406984
57931	chr2	-	2156	2	ISM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	14122	7	14122	-7	3prime_fragment	FALSE	canonical	3	41	junction_1	0	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCAGCCTGTCAGTTTT	7442	False	NA	NA	False	NA	NA	NA	164270984	164266173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_164268158_164270812
57932	chr1	+	2190	5	Antisense	novelGene_ENSMUSG00000016481.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	56	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCATTATGGGAACTCGG	NA	False	NA	NA	False	NA	NA	NA	194796369	194813868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_194797146_194799780_194800188_194805996_194806084_194811454_194812320_194813813
57933	chr14	+	953	9	NNC	ENSMUSG00000021771.15	novel	893	9	NA	NA	-28	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	752.546177985112	10	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGGTGTGCATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	21881605	21895586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890527_21895415
57934	chr11	-	984	1	NIC	ENSMUSG00000017188.4	novel	886	2	NA	NA	-8	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4119	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTAGTGTGTGGGGG	5665	False	NA	NA	False	NA	NA	NA	101169777	101168793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101168800_101169800
57935	chr13	+	1648	1	Intergenic	novelGene_1535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCACCACAGCCTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	111614996	111616644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_111615000_111616600
57936	chr6	+	1114	9	NNC	ENSMUSG00000030327.9	novel	2476	8	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	183.742176704207	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTTTTCATCTTTTA	868	False	NA	NA	False	NA	NA	NA	122851512	122865900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298_122864364_122865645
57937	chr13	+	814	4	Antisense	novelGene_ENSMUSG00000045136.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGAGGGCCGGGTGGGTTCG	NA	False	NA	NA	False	NA	NA	NA	34258499	34314338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34258679_34258783_34259162_34311747_34311817_34314150
57938	chrX	-	1449	3	Antisense	novelGene_ENSMUSG00000055555.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGGGCAGAACTGCCACG	7882	False	NA	NA	False	NA	NA	NA	52736708	52726766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_52727019_52729334_52729515_52735691
57939	chr7	+	1486	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	-17	1	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	33.5016324229134	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGTGCCATGTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	127172534	127182473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
57940	chr6	+	936	6	NNC	ENSMUSG00000029910.15	novel	1725	5	NA	NA	32	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	369.381970323404	23	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATTAAGCCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	66512483	66518006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66517028_66517815
57941	chr14	+	1996	10	NNC	ENSMUSG00000019297.10	novel	3694	10	NA	NA	251	-1445	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	221.917457683462	185	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGGAAATATTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	55983400	55991512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55983478_55983619_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
57942	chr5	+	2725	10	NIC	ENSMUSG00000028986.13	novel	2966	11	NA	NA	2	3	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	17.6823829464998	4	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATTTGCTTTGTTTATTC	NA	False	NA	NA	False	NA	NA	NA	24305605	24365786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24361887_24362090_24363536_24363635_24364444
57943	chr3	+	1619	4	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	14219	-16	4453	-7	intron_retention	FALSE	canonical	3	87	junction_1	10.2740233382816	40	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATGGTCCTATTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	96591861	96598341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507
57945	chr1	+	2839	9	FSM	ENSMUSG00000026179.15	ENSMUST00000087225.6	2859	9	15	5	15	-3	multi-exon	FALSE	canonical	3	63	junction_1	11.428445869846	1	120	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAACCAAGGTCTGAGCTC	9378	False	NA	NA	False	NA	NA	NA	74371783	74392840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
57946	chr15	-	1712	7	NNC	ENSMUSG00000018042.19	novel	1982	9	NA	NA	7906	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	759.483962232837	1	93	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGTTAAAGTAAAACTTT	6409	False	NA	NA	False	NA	NA	NA	83046472	83037726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038924_83043026_83043113_83044304_83044391_83044538_83044623_83045021_83045152_83046068_83046158_83046432
57947	chr7	-	2613	18	NNC	ENSMUSG00000001248.16	novel	2713	19	NA	NA	0	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	76.1130101324254	66	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCCCAATAAAGGGTTGG	5754	False	NA	NA	False	NA	NA	NA	30850439	30829578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30843065_30843299_30850320
57949	chr19	+	874	5	FSM	ENSMUSG00000071644.11	ENSMUST00000135025.2	1272	5	104	294	104	-294	multi-exon	FALSE	canonical	3	8905	junction_2	398.043025312591	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGTCCTGCCTCCTTT	6310	False	NA	NA	False	NA	NA	NA	8949871	8955549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
57950	chr7	+	1625	10	FSM	ENSMUSG00000030815.12	ENSMUST00000033086.8	1570	10	-56	1	8	1	multi-exon	FALSE	canonical	3	46	junction_3	31.2018517968975	311	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATGTCTGCTGTCTAG	NA	False	NA	NA	False	NA	NA	NA	127172519	127182478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
57951	chr4	-	436	1	ISM	ENSMUSG00000060862.11	ENSMUST00000049583.8	7192	19	68501	27	11468	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAAAGTCTGTACTTAG	NA	False	NA	NA	False	NA	NA	NA	136707505	136707069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_136707100_136707500
57953	chr5	-	1676	3	NNC	ENSMUSG00000046000.6	novel	3424	2	NA	NA	44	-1147	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCCAGGGCAGCATAATC	NA	False	NA	NA	False	NA	NA	NA	97540194	97531203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_97532339_97532455_97532501_97539698
57954	chr7	+	1226	9	NNC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	23	-569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	547.349280053423	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGCCACGTTCGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	16515315	16531630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_16515478_16519595_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
57955	chr15	-	3127	23	NNC	ENSMUSG00000023008.19	novel	4290	26	NA	NA	112	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.2097830251915	42	30	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCACCAAGCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	99268218	99215102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99215572_99218286_99218395_99218916_99219047_99219135_99219217_99219314_99219384_99219511_99219747_99220075_99220279_99220483_99220609_99220692_99220762_99221200_99221481_99222621_99222724_99223121_99223272_99223523_99223635_99223734_99223810_99225395_99225490_99225701_99225779_99225938_99226048_99227160_99227314_99229867_99229952_99232734_99232812_99233568_99233650_99235510_99235595_99268057
57956	chr2	-	1040	2	Genic_Genomic	ENSMUSG00000081476.2	novel	597	1	NA	NA	-26	519	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTGAAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	94215469	94214327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_94214680_94214781
57958	chr2	+	2301	10	FSM	ENSMUSG00000027359.17	ENSMUST00000061491.14	2918	10	617	0	-566	0	multi-exon	FALSE	canonical	3	61	junction_5	10.1592261783666	67	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGAGGCTTCGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	126394943	126430163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_126395553_126403456_126403667_126406597_126406757_126409666_126409792_126416621_126416817_126419779_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
57960	chr7	+	1837	6	FSM	ENSMUSG00000042289.12	ENSMUST00000132702.8	1899	6	59	3	5	-3	multi-exon	FALSE	canonical	3	65	junction_5	11.2178429299041	158	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTTGTCTACCTTTTAC	1943	False	NA	NA	False	NA	NA	NA	127399834	127402971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407_127401571_127401957
57961	chr14	+	1981	11	NIC	ENSMUSG00000021809.11	novel	1589	10	NA	NA	1	-6	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	5.35163526410386	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGAATTCGTGTGAAGGTA	NA	False	NA	NA	False	NA	NA	NA	20344791	20366824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_20344861_20345155_20345335_20350654_20350748_20354020_20354161_20356299_20356435_20357300_20357433_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
57962	chr1	-	1356	9	NNC	ENSMUSG00000026260.13	novel	2020	10	NA	NA	2	-207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	436.438712765034	10	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGTGTCTGCGTGGCAC	NA	False	NA	NA	False	NA	NA	NA	92401467	92367207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_92367630_92379732_92379842_92389999_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
57963	chr15	-	1037	6	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	401	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	689.2	5	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGCAAATCCCGACCC	NA	False	NA	NA	False	NA	NA	NA	83056392	83037712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038226_83038474_83038674_83043665_83043713_83049194_83049257_83050271_83050408_83056312
57964	chr13	+	1186	4	FSM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	6	-5	6	5	multi-exon	FALSE	canonical	3	352	junction_2	21.013223349966	677	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCCATGTGCCACCCTA	NA	False	NA	NA	False	NA	NA	NA	49340966	49349725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079
57965	chr11	-	2536	7	FSM	ENSMUSG00000014349.8	ENSMUST00000100528.5	3997	7	400	1061	400	-1061	multi-exon	FALSE	canonical	3	1035	junction_3	37.418429802557	364	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGAAGCGCCTGTGGGTG	5867	False	NA	NA	False	NA	NA	NA	95955814	95939318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95941241_95942559_95942651_95946663_95946777_95949141_95949254_95951762_95951951_95953820_95953894_95955777
57966	chr9	-	1419	10	NNC	ENSMUSG00000041528.16	novel	445	2	NA	NA	528	2258	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	55	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCCAGTGACGTAACAGG	NA	False	NA	-33	True	NA	NA	NA	107928901	107926474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107926560_107926709_107926843_107926957_107927040_107927126_107927175_107927311_107927456_107927648_107927807_107927890_107927970_107928045_107928175_107928257_107928441_107928523
57967	chr19	-	1474	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	29	-682	29	682	multi-exon	FALSE	canonical	3	500	junction_1	0	2330	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCTCTGAGTTAGGTGG	NA	False	NA	NA	False	NA	NA	NA	8858258	8856695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8857981_8858069
57968	chr11	+	1674	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106158.9	1690	15	-11	27	-11	-25	multi-exon	FALSE	canonical	3	22	junction_10	252.602010107212	1	70	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGAATAAAGAGTCGCGC	NA	False	NA	NA	False	NA	NA	NA	120563870	120600243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
57969	chr3	+	513	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	-29	-59	-29	59	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGACATGGTGGAATAG	7635	False	NA	NA	False	NA	NA	NA	37768859	37769372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_37768900_37769400
57971	chr15	+	2224	1	Intergenic	novelGene_3302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACCTTCATCCAGTAAGG	NA	False	NA	NA	False	NA	NA	NA	72757832	72760056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_72757800_72760100
57972	chr6	+	3278	5	NNC	ENSMUSG00000038538.18	novel	5521	5	NA	NA	401	2584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	30.6675724503913	1	105	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAGTCAAACAATAATT	NA	False	NA	NA	False	NA	NA	NA	38468339	38482098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_38468867_38475622_38475855_38476121_38476212_38479172_38481156_38481652
57973	chr15	+	1084	8	NNC	ENSMUSG00000033047.6	novel	1942	13	NA	NA	-24	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	663.285637365	32	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGGGTCTTTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	78959423	78978580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963253_78973807_78974162_78977536_78977618_78978400
57974	chr8	+	2185	2	Intergenic	novelGene_1710	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	94767755	94770400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_94767901_94768360
57976	chr7	+	2071	2	Antisense	novelGene_ENSMUSG00000025724.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGTATGTATGTATATACA	NA	False	NA	NA	False	NA	NA	NA	80564347	80566688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_80565653_80565922
57977	chr11	+	1229	6	NNC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	0	-187	at_least_one_novel_splicesite	FALSE	canonical	1	32	junction_5	2044.2100087809	2	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTGGTATGTCATCTTT	439	False	NA	NA	False	NA	NA	NA	52122863	52137498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135953_52136811
57978	chr1	+	2938	1	ISM	ENSMUSG00000026159.14	ENSMUST00000189220.7	8044	13	58581	181	57991	-181	mono-exon	FALSE	NA	NA	NA	NA	NA	45	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGATGGCCTCTTCAATTG	NA	False	NA	NA	False	NA	NA	NA	82875784	82878722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_82875800_82878700
57979	chr3	-	1201	8	ISM	ENSMUSG00000027889.18	ENSMUST00000078912.7	3368	18	4292	4360	-489	21	internal_fragment	FALSE	canonical	3	198	junction_3	25.1534068776184	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTTTATTACATTTTAA	NA	False	NA	NA	False	NA	NA	NA	107988423	107985762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316
57980	chr5	-	299	1	ISM	ENSMUSG00000000568.16	ENSMUST00000172361.8	6811	9	39	22666	18	-11293	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGGGGCGGCGGCGGCGGC	NA	False	NA	NA	False	NA	NA	NA	100126758	100126459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100126500_100126800
57981	chr8	-	1115	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	7	-2	0	0	multi-exon	FALSE	canonical	3	487	junction_9	1051.54616581631	27	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321106	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
57984	chr11	+	1099	6	NNC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	106.202448182704	61	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGGCATGTTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	71933285	71938191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937916
57985	chr15	-	3933	26	ISM	ENSMUSG00000022562.16	ENSMUST00000171340.9	4081	27	420	4	420	-2	3prime_fragment	TRUE	canonical	2	7	junction_11	7.11550419857933	34	36	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTTATTGGGTTATTGG	9747	False	NA	NA	False	NA	NA	NA	76190881	76180804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76180982_76181120_76181219_76181316_76181478_76181558_76181717_76181818_76181969_76182105_76182241_76182335_76182483_76182586_76182772_76185025_76185201_76185292_76185395_76185486_76185648_76186245_76186398_76186581_76186695_76186830_76186970_76187055_76187194_76187377_76187549_76187635_76187749_76188286_76188553_76188665_76188734_76188833_76188973_76189092_76189259_76189339_76189536_76189647_76189772_76189860_76189961_76190398_76190591_76190674
57986	chr11	+	1632	7	NIC	ENSMUSG00000023170.15	novel	1220	10	NA	NA	-3	7	intron_retention	FALSE	canonical	3	312	junction_4	12.7235564559949	2	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACCATCATGCCTGAGT	4088	False	NA	NA	False	NA	NA	NA	69804872	69807409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69805260_69805577_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806939_69807023
57987	chr1	-	1891	6	ISM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	11	0	-6	0	intron_retention	FALSE	canonical	3	103	junction_4	16.4608626748418	93	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	890	False	NA	NA	False	NA	NA	NA	171173202	171169811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481
57988	chr18	+	3614	14	ISM	ENSMUSG00000054321.8	ENSMUST00000234789.2	5134	15	13761	737	13761	-737	3prime_fragment	FALSE	canonical	3	88	junction_12	8.43983229873492	58	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAACAAAACTTTGCT	NA	False	NA	NA	False	NA	NA	NA	14930062	15032679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_14930116_14932135_14932244_14937522_14937685_14937773_14937897_14940401_14940492_14946147_14946748_14954494_14954613_14955150_14955263_14963075_14963246_14968848_14968980_14974961_14975088_14977470_14977528_14992228_14992334_15031020
57991	chr2	-	3582	1	NIC	ENSMUSG00000036093.8	novel	5239	6	NA	NA	6940	593	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACAAGCCAACCCCAACC	NA	False	NA	NA	False	NA	NA	NA	52295387	52291805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_52291800_52295400
57992	chr4	+	1172	10	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	-247	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	122.6299260598	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTTTTCTGACACCAGA	-10	True	NA	NA	False	NA	NA	NA	41755510	41758682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41756562_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
57993	chr6	+	3155	13	NIC	ENSMUSG00000032827.16	novel	4810	20	NA	NA	-4	4	combination_of_known_junctions	FALSE	canonical	1	1	junction_12	4.40328160454097	8	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCTTCCTGAGGAACAA	50	True	NA	NA	False	NA	NA	NA	4903013	5116512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_4903032_4905225_4906845_5045935_5046069_5057457_5057579_5063990_5064096_5077479_5077616_5083040_5083107_5100431_5100588_5110999_5111054_5113600_5113831_5115118_5115216_5115308_5115481_5116264
57994	chrM	+	529	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	158	-3	158	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	132	False	NA	NA	False	NA	NA	NA	7170	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7200_7700
57996	chr8	-	1820	2	ISM	ENSMUSG00000074194.5	ENSMUST00000098550.4	1587	4	7380	-376	7380	376	3prime_fragment	FALSE	canonical	3	4	junction_1	0	5	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAACTCAGAGATGTGTG	2031	False	NA	NA	False	NA	NA	NA	85838886	85835899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_85837672_85838838
57997	chr12	-	1522	7	FSM	ENSMUSG00000021087.19	ENSMUST00000021497.16	1544	7	23	-1	-15	0	multi-exon	FALSE	canonical	3	47	junction_2	4.27200187265877	116	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTCTCTCTGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	72283475	72258525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72283302
57998	chr17	+	2796	11	Antisense	novelGene_ENSMUSG00000024242.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	76	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAACACAGAAAATATAA	6379	False	NA	NA	False	NA	NA	NA	80903227	80923958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_80905151_80909619_80909726_80911411_80911458_80913178_80913316_80913390_80913452_80917181_80917261_80919459_80919545_80920896_80920939_80921343_80921456_80922444_80922606_80923914
57999	chr17	+	2608	15	NNC	ENSMUSG00000034709.9	novel	279	2	NA	NA	-20258	1162	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	28.556871291498	1	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTGTCCAGTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	88817287	88874380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88817439_88828895_88828949_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873375_88873450
58000	chr11	+	1693	14	NNC	ENSMUSG00000025156.18	novel	1827	14	NA	NA	13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	318.433090516822	1	84	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCCCAAGGCTCCTTTCC	1437	False	NA	NA	False	NA	NA	NA	120675143	120679924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120675169_120675946_120676040_120676525_120676679_120677215_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
58001	chr11	-	1653	11	Antisense	novelGene_ENSMUSG00000020741.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	40.5	2	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCGTTCCAGGATG	NA	False	NA	NA	False	NA	NA	NA	74557792	74552559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_74552920_74554209_74554431_74554607_74554707_74554848_74554956_74555597_74555753_74555832_74555890_74556002_74556252_74556517_74556600_74556744_74556902_74556979_74557119_74557765
58003	chr1	+	1588	14	NNC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	117.442066795737	2	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAACCTTGGAGCCAGCT	NA	False	NA	NA	False	NA	NA	NA	75412608	75419806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75412656_75412824_75412957_75413381_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417131_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
58004	chr7	-	3302	1	ISM	ENSMUSG00000044465.20	ENSMUST00000179474.9	10853	12	25540	2	7117	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	26	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGTTGTTCACATCTC	NA	False	NA	NA	False	NA	NA	NA	105023721	105020419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_105020400_105023700
58005	chr13	+	1436	4	NNC	ENSMUSG00000113081.2	novel	1044	3	NA	NA	-8107	239	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	203.201049866054	33	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATTTCTGCTGCAATGAA	NA	False	NA	NA	False	NA	NA	NA	62403272	62423306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62403345_62420579_62420707_62420906_62420968_62422130
58006	chr4	-	2209	4	NNC	ENSMUSG00000028557.11	novel	1955	4	NA	NA	43	319	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	102.557301056531	99	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTATAAAGTAAATTTGGA	NA	False	NA	NA	False	NA	NA	NA	109333829	109309776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_109311620_109314094_109314265_109333306_109333476_109333802
58008	chr1	+	1547	7	FSM	ENSMUSG00000026426.11	ENSMUST00000027684.11	1713	7	162	4	162	-4	multi-exon	FALSE	canonical	3	419	junction_3	43.3720980457354	222	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGGGGTGTGTATGGTGC	NA	False	NA	NA	False	NA	NA	NA	135074723	135084003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_135074839_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
58009	chr10	+	1462	10	FSM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	-24	4	0	-4	multi-exon	FALSE	canonical	3	36	junction_9	41.9205597927	86	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCACGCCGATCCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	61551065	61575035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
58010	chr1	-	1941	1	ISM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	73670	38	73670	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	95	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGTATCTTCTGTAAAAA	336	False	NA	NA	False	NA	NA	NA	71068635	71066694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71066700_71068600
58011	chr4	+	2329	13	NIC	ENSMUSG00000028641.17	novel	3188	15	NA	NA	3	-15	intron_retention	FALSE	canonical	3	347	junction_4	37.7560701521402	59	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATTTGTGTTTTTTTCAC	NA	False	NA	NA	False	NA	NA	NA	119092543	119105549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_119092596_119093973_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678_119098732_119098879_119099002_119101218_119101347_119101581_119101678_119102153_119102305_119103831_119104404_119104641_119104783_119105087
58012	chr2	-	1572	6	NNC	ENSMUSG00000086453.8	novel	676	6	NA	NA	-10	1163	intron_retention	TRUE	canonical	2	2	junction_1	2.65329983228432	39	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTACGTGAACTGTTTAT	2124	False	NA	NA	False	NA	NA	NA	164611554	164594998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164595897_164595992_164596225_164601148_164601261_164604463_164604529_164609632_164609834_164611490
58013	chr6	+	4558	50	NNC	ENSMUSG00000029661.17	novel	5348	52	NA	NA	-15	-595	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2.1570955529345	9	79	17	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTAAGAAAACCCAAATAAA	447	False	NA	NA	False	NA	NA	NA	4505686	4540949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_4505910_4509578_4509640_4510683_4510795_4512360_4512415_4515209_4515255_4515480_4515535_4515628_4515683_4515960_4516015_4516391_4516446_4516899_4516954_4518473_4518519_4518790_4518845_4518947_4518993_4519291_4519346_4519829_4519929_4520037_4520083_4520170_4520270_4520595_4520650_4520771_4520880_4521230_4521285_4521395_4521495_4522441_4522496_4522955_4523055_4523593_4523648_4524116_4524171_4524501_4524556_4524875_4524930_4525881_4525927_4527054_4527154_4528305_4528414_4529067_4529122_4530171_4530226_4530956_4531011_4531103_4531158_4531237_4531346_4531894_4531949_4532743_4532798_4533741_4533904_4534580_4534689_4535380_4535489_4535830_4535885_4535975_4536084_4536207_4536262_4536596_4536705_4537172_4537227_4537349_4537458_4537777_4538037_4538625_4538811_4539462_4539706_4540515
58014	chr18	-	2989	3	FSM	ENSMUSG00000056130.11	ENSMUST00000070084.11	4204	3	80	1135	80	-1135	multi-exon	FALSE	canonical	3	7	junction_1	2	25	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAATGGCACTTCTTCAA	9585	False	NA	NA	False	NA	NA	NA	46707520	46691492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_46694140_46705867_46705971_46707281
58015	chr14	-	2876	1	Antisense	novelGene_ENSMUSG00000007817.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	134	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCCGGGTTTGTGAGTT	NA	False	NA	NA	False	NA	NA	NA	25666269	25663393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_25663400_25666300
58017	chr5	+	4289	3	NIC	ENSMUSG00000038181.17	novel	3715	4	NA	NA	-6	-4	intron_retention	FALSE	canonical	3	41	junction_1	2.5	9	130	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAAACTGTTTTTAGGTC	NA	False	NA	NA	False	NA	NA	NA	24791816	24797478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24793299_24794094_24795490_24796066
58018	chr5	+	1328	6	Intergenic	novelGene_971	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	177	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAGTAAACTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	147941084	147949120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_147941720_147942675_147942827_147943327_147943469_147943860_147944079_147945257_147945336_147949015
58019	chr3	+	709	3	FSM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	-27	3	-27	-3	multi-exon	TRUE	canonical	3	427	junction_2	41.5	3808	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATTTGACGTAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	93462359	93471947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_93462519_93468250_93468403_93471549
58021	chr6	-	1297	10	NNC	ENSMUSG00000030189.16	novel	1853	10	NA	NA	10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1081.44448440015	1062	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGGCTGTGTAACTAGT	4981	False	NA	NA	False	NA	NA	NA	131365391	131341822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980_131365020_131365353
58022	chr17	-	1413	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	4	44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.8807492274273	304	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTTTACTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	71905746	71895507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71895980_71897482_71897518_71898852_71898943_71904930
58024	chr7	-	1648	11	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_8	41.0980534818865	41	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTTGGCTTGTTCTAT	NA	False	NA	NA	False	NA	NA	NA	121732136	121706487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
58025	chr5	-	2311	15	Antisense	novelGene_ENSMUSG00000104633.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	57	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCGGGAGAGTTGGCGCT	NA	False	NA	NA	False	NA	NA	NA	143868261	143846847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_143846896_143848741_143848878_143850218_143850303_143850433_143850538_143851435_143851621_143853171_143853339_143854394_143854493_143856326_143856425_143858831_143858909_143860284_143860449_143862036_143862319_143864915_143865085_143865759_143865860_143865997_143866169_143867833
58026	chr13	+	2510	12	NNC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	89.9614242397244	1	117	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	84370450	84443989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420315_84420473_84430867_84430982_84431422_84431484_84432108_84432245_84434803_84434918_84440497_84440672_84441499_84441597_84442721
58027	chr2	-	1602	15	NNC	ENSMUSG00000026767.13	novel	2316	15	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	68.7143228393128	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTAAGATACGTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	12424239	12352735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_12353015_12354517_12354654_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404836_12404949_12405835_12405888_12410670_12410732_12414811_12414892_12423969
58029	chr3	-	1310	9	NIC	ENSMUSG00000028187.11	novel	1661	9	NA	NA	69	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_8	185.127616456865	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTAGGTATTAAAGTCC	NA	False	NA	NA	False	NA	NA	NA	146226737	146212098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_146212331_146212826_146212954_146213268_146213451_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226439
58030	chr19	+	1416	5	NIC	ENSMUSG00000108414.2	novel	744	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	781	junction_1	144.543246123781	3	50	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	8701510	8703807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8702086_8702377_8703191_8703430_8703467_8703602
58032	chr5	+	2736	1	ISM	ENSMUSG00000029649.11	ENSMUST00000201120.2	3850	4	8882	793	-850	-793	mono-exon	FALSE	NA	NA	NA	NA	NA	6	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTTCATCGTGCTATCG	NA	False	NA	NA	False	NA	NA	NA	147806344	147809080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_147806300_147809100
58035	chr3	-	2062	8	ISM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	58	5	-12	-5	intron_retention	TRUE	canonical	3	31	junction_6	3.23879544250132	98	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTGAAAAGATATGTGTCC	NA	False	NA	NA	False	NA	NA	NA	88997294	88991292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975
58036	chr2	-	560	3	Genic_Genomic	ENSMUSG00000081406.5	novel	750	1	NA	NA	-32	40	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75022198	75021376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_75021603_75021719_75022002_75022146
58037	chr17	+	1942	14	ISM	ENSMUSG00000040312.15	ENSMUST00000173903.2	3054	18	753	1881	753	-309	internal_fragment	FALSE	canonical	3	93	junction_3	15.0937896237857	16	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGGGAGCAGGCCAAGGC	5548	False	NA	NA	False	NA	NA	NA	35829112	35840021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941
58039	chr14	-	1311	8	NNC	ENSMUSG00000060373.16	novel	1301	8	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1529.61586480971	2	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8773	False	NA	NA	False	NA	NA	NA	52341437	52312255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321872_52341345
58040	chr17	+	1928	1	NIC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	31	342	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCTTTTCTTCCAAAAT	NA	False	NA	NA	False	NA	NA	NA	48717072	48719000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_48717100_48719000
58041	chr5	-	461	2	Genic_Genomic	ENSMUSG00000060419.9	novel	441	1	NA	NA	-54	68	multi-exon	FALSE	non_canonical	1	14	junction_1	0	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGACTTGTT	NA	False	NA	NA	False	NA	NA	NA	129205635	129205072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_129205432_129205533
58042	chr18	-	1298	1	Intergenic	novelGene_4518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGGCCTACTAGGGCTTC	NA	False	NA	NA	False	NA	NA	NA	24771412	24770114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_24770100_24771400
58043	chrX	-	2751	21	Antisense	novelGene_ENSMUSG00000031066.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	136	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGACGCAACTGAAGATAGGA	NA	False	NA	NA	False	NA	NA	NA	20586213	20570182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20570356_20577984_20578090_20578274_20578398_20578562_20578681_20579073_20579218_20579349_20579430_20579595_20579632_20579984_20580159_20580250_20580382_20580736_20580968_20581088_20581174_20581264_20581359_20582983_20583193_20583991_20584039_20584229_20584497_20584586_20584659_20584927_20585028_20585307_20585452_20585535_20585660_20585835_20585919_20586002
58044	chr3	+	2087	2	ISM	ENSMUSG00000028140.14	ENSMUST00000199009.2	716	5	18	1255	-1	-1255	intron_retention	FALSE	canonical	3	223	junction_1	0	2	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTATAAGTGAATATTTAA	8501	False	NA	NA	False	NA	NA	NA	94350642	94352893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_94350802_94350965
58045	chr15	+	1289	4	NNC	ENSMUSG00000022415.13	novel	819	4	NA	NA	35	565	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_2	654.950888744085	4	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCATTCATTCATTCATT	NA	False	NA	NA	False	NA	NA	NA	79975579	79998207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79975694_79994644_79994883_79995849_79995946_79997366
58046	chr4	+	2478	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	1	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	62.2064216049186	1	132	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTAAAATTCTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	115696420	115736432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727545_115730388_115730504_115731816_115731994_115732583_115732743_115733777_115733822_115735146
58047	chr16	+	1033	9	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	255	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	640.165005584498	1	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGATAGCAAAGCGACTTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22929938_22932023
58048	chr8	-	2509	12	ISM	ENSMUSG00000031715.15	ENSMUST00000043359.9	6113	24	22896	1589	978	-1589	3prime_fragment	FALSE	canonical	3	1409	junction_7	119.939998773491	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGCAGGAATACCCAGAG	NA	False	NA	NA	False	NA	NA	NA	81443230	81426724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_81427758_81428756_81428865_81431233_81431447_81431847_81431967_81432075_81432209_81435311_81435435_81435741_81435856_81436284_81436396_81437185_81437306_81438285_81438435_81440562_81440696_81443077
58050	chr4	-	1494	9	FSM	ENSMUSG00000028744.16	ENSMUST00000053862.12	1532	9	36	2	6	0	multi-exon	FALSE	canonical	3	103	junction_8	18.155147341732	342	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGCCTGTTTCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	139037983	139025840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
58051	chr8	-	3118	18	NIC	ENSMUSG00000031788.15	novel	3277	20	NA	NA	-196	-9	combination_of_known_splicesites	FALSE	canonical	3	26	junction_16	17.9844223250785	53	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTTTTACACAAGTGCA	30	False	NA	NA	False	NA	NA	NA	95864746	95826470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_95827081_95828036_95828146_95828639_95828775_95828974_95829205_95829290_95829421_95830038_95830163_95830522_95830654_95832347_95832453_95833090_95833273_95834051_95834164_95834982_95835114_95835202_95835351_95835809_95835984_95836411_95836652_95836757_95836902_95837321_95837388_95861344_95861488_95864542
58054	chr12	-	1642	1	NIC	ENSMUSG00000020634.13	novel	2696	7	NA	NA	21704	-3529	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTTTCACTGAACAACT	NA	False	NA	NA	False	NA	NA	NA	4935560	4933918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_4933900_4935600
58055	chr10	-	1544	1	NIC	ENSMUSG00000019961.18	novel	3533	9	NA	NA	1170	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACGGAAAAGATTTATGACT	NA	False	NA	NA	False	NA	NA	NA	90986525	90984981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90985000_90986500
58057	chr8	+	3143	15	ISM	ENSMUSG00000031706.8	ENSMUST00000005600.6	4172	21	17299	8	17299	-8	3prime_fragment	FALSE	canonical	3	35	junction_2	7.38172039015075	33	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTTTGTCTACTGATGA	7062	False	NA	NA	False	NA	NA	NA	84810763	84823613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84810804_84812201_84812297_84814334_84814702_84816739_84816922_84817578_84817699_84817994_84818108_84819163_84819283_84819408_84819519_84819602_84819755_84819831_84819930_84821355_84821506_84821578_84821788_84822024_84822179_84822256_84822303_84822425
58058	chr4	-	3596	16	NNC	ENSMUSG00000028931.13	novel	3961	16	NA	NA	-4	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	4.34613493680177	20	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCACGTTTCTGATCTC	NA	False	NA	NA	False	NA	NA	NA	152562005	152475207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487488_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152519238_152519281_152520261_152520395_152561857
58059	chr10	-	2523	1	Intergenic	novelGene_3497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATTTGTAGGGTTGCGG	NA	False	NA	NA	False	NA	NA	NA	82702072	82699549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_82699500_82702100
58061	chrX	-	2349	9	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	43	8081	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	36.0927624323769	14	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTCCATGCTTCCCAG	NA	False	NA	NA	False	NA	NA	NA	49724095	49696190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49697485_49697563_49697692_49701581_49701728_49704237_49704393_49709551_49709682_49715313_49715387_49716083_49716128_49719767_49719873_49723821
58062	chr3	+	1617	9	NNC	ENSMUSG00000028093.16	novel	1754	10	NA	NA	38	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	407.896662771345	3	103	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGCATCATGTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	97066130	97083831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073962_97075737_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
58063	chr17	+	2605	12	FSM	ENSMUSG00000023963.11	ENSMUST00000170988.2	3053	12	-94	542	-94	-1	multi-exon	FALSE	canonical	3	74	junction_8	14.3492448040404	73	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGAGTCTGGTTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	43978221	44061780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_43978686_43987721_43987858_43991014_43991190_43993838_43993989_43996076_43996168_44002524_44002630_44012367_44012459_44036405_44036540_44041862_44041959_44042815_44042905_44057415_44057504_44060794
58064	chr4	-	1789	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	28	-827	28	827	multi-exon	FALSE	canonical	3	52	junction_1	36	201	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACAGGGTCTGAATCTT	NA	False	NA	NA	False	NA	NA	NA	133399930	133388737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133390103_133397048_133397172_133399629
58065	chr6	-	1477	4	NNC	ENSMUSG00000038028.10	novel	3651	6	NA	NA	7664	477	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	489.612772164561	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAACTAGCTCTTGGGA	NA	False	NA	NA	False	NA	NA	NA	127078849	127064366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_127065478_127068018_127068225_127069583_127069706_127078811
58066	chr2	-	4126	18	Antisense	novelGene_ENSMUSG00000026979.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	199	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCATGCTGATAGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	24298080	24275359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_24275472_24276641_24276709_24284037_24285054_24286318_24286444_24286687_24286796_24287220_24287577_24290431_24290613_24291025_24291102_24291229_24291344_24291533_24291593_24291741_24291832_24292880_24292927_24293211_24293372_24294391_24294463_24294746_24294913_24295318_24295461_24295697_24295841_24296986
58067	chr2	-	2060	10	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	34	-19	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	209.700197518997	1	101	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGAGCTTTATAGGAAT	NA	False	NA	NA	False	NA	NA	NA	165717663	165669067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165693919_165694069_165717624
58068	chr9	-	2489	10	FSM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	185	7197	3	771	multi-exon	TRUE	canonical	3	14	junction_9	3.42467444609388	59	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTTTTTTGTCACA	NA	False	NA	NA	False	NA	NA	NA	75518400	75480099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_75481406_75483927_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
58069	chr15	-	2038	7	NNC	ENSMUSG00000022559.9	novel	2091	7	NA	NA	-10	-2	intron_retention	TRUE	non_canonical	0	0	junction_6	67.6619456481181	5	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTATTTATTTATTATAT	NA	False	NA	NA	False	NA	NA	NA	76422956	76419922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76422484_76422814
58070	chr8	-	1400	13	NNC	ENSMUSG00000038225.16	novel	3943	14	NA	NA	13998	23525	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	7	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACTCCAAACTCGCGCC	NA	False	NA	-23	True	NA	NA	NA	47031650	47005103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47005162_47007048_47007097_47009114_47009229_47012901_47013005_47014810_47014872_47015450_47015680_47021643_47021718_47023006_47023113_47025784_47025865_47026466_47026529_47026895_47026944_47029361_47029416_47031287
58072	chr7	-	877	7	NIC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	-8	115	combination_of_known_junctions	FALSE	canonical	1	5	junction_6	180.206363187689	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTGTGTGTGTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	100232325	100198328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100232196
58073	chr13	-	1517	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	16	-341	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTATGCTATTAATATAAG	NA	False	NA	NA	False	NA	NA	NA	34314321	34311071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311851_34312158_34312515_34312854_34312966_34313228_34313338_34314159
58074	chr9	-	2084	11	FSM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	11	0	11	0	multi-exon	FALSE	canonical	3	169	junction_1	8.15107354892593	218	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTGGGGCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	35028158	34957871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35027993
58075	chr5	+	1234	1	NIC	ENSMUSG00000079659.6	novel	1369	6	NA	NA	-3153	-4267	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCATACACAGCACTAGCA	NA	False	NA	NA	False	NA	NA	NA	9202579	9203813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_9202600_9203800
58076	chr4	-	1595	10	NNC	ENSMUSG00000028776.15	novel	1952	12	NA	NA	-2437	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	82.2611019187616	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	130065714	130059396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130065610
58077	chr3	-	3326	19	ISM	ENSMUSG00000028163.18	ENSMUST00000164430.7	3007	23	41097	-623	-4560	0	3prime_fragment	FALSE	canonical	3	24	junction_17	11.770962388673	74	40	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTGATCTCTGCAAA	NA	False	NA	NA	False	NA	NA	NA	135332463	135290415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969_135300140_135300625_135300828_135307186_135307302_135309470_135309613_135310817_135311007_135312332_135312423_135313912_135314057_135318174_135318314_135319411_135319504_135319667_135319773_135321032_135321192_135324564_135324729_135332355
58078	chr11	-	2744	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	-23	0	-23	0	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	87	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTTCTGTGATGTGTG	NA	False	NA	NA	False	NA	NA	NA	98666182	98658757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
58079	chr3	-	911	4	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTGTGCCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	151938664	151931797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151931854_151933806_151933882_151937512_151937658_151938029
58080	chrX	+	3928	8	NIC	ENSMUSG00000025529.15	novel	4330	9	NA	NA	268	1	combination_of_known_junctions	TRUE	canonical	2	6	junction_5	4.0607629724434	16	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAAAGTTTTATAATTTT	NA	False	NA	NA	False	NA	NA	NA	111510490	111544760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_111510603_111513964_111514070_111524589_111525133_111533648_111533805_111534435_111534574_111537800_111537846_111541522_111541667_111542075
58081	chr7	+	2273	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	-2	-8	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	33.4490583749803	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCACTGAGATGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	18915126	18940395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_18915211_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
58082	chr19	+	1482	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	22	-566	2	8	multi-exon	FALSE	canonical	3	568	junction_2	70.8411760364142	481	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCGAGAATCTTTAAGGAAAT	4392	False	NA	NA	False	NA	NA	NA	4175980	4182292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
58083	chr1	-	3300	5	FSM	ENSMUSG00000042066.17	ENSMUST00000045473.16	3410	5	89	21	89	-13	multi-exon	FALSE	canonical	3	25	junction_4	2.38484800354236	26	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTATGTTTTCAAACC	NA	False	NA	NA	False	NA	NA	NA	132318930	132284073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_132285556_132286640_132286777_132288012_132288954_132308394_132308920_132318714
58084	chr16	+	1086	5	ISM	ENSMUSG00000022868.7	ENSMUST00000231932.2	848	6	2302	-543	-412	0	3prime_fragment	FALSE	canonical	3	13	junction_1	40.6540280907071	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTTCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	22713096	22718193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22713186_22713943_22714108_22715257_22715360_22716877_22716962_22717546
58085	chr9	+	5143	1	Intergenic	novelGene_1082	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGAAGTCAGTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	58363241	58368384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58363200_58368400
58086	chr1	-	2436	4	Antisense	novelGene_ENSMUSG00000065228.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	149	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCTCCGAAAGGCTGAG	NA	False	NA	NA	False	NA	NA	NA	160866104	160862749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160862763_160863319_160863371_160863548_160865841_160866024
58087	chr10	-	1298	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1449.17098046167	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959825	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959778
58088	chr10	+	1989	11	NIC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	26	-125	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	23.6856496638788	1	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACCTTGCGGGAGGGC	NA	False	NA	NA	False	NA	NA	NA	128541074	128555982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128541154_128542104_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553926_128554012_128554466_128554673_128554768_128554857_128555753
58089	chr11	-	2574	2	Intergenic	novelGene_2250	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	53	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGCTTATATTTTGCCC	NA	False	NA	NA	False	NA	NA	NA	33487233	33480978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_33483454_33487134
58090	chr6	-	833	2	Intergenic	novelGene_4137	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCGGGGCGGTTACTATC	4099	False	NA	NA	False	NA	NA	NA	35114206	35110798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_35111506_35114080
58092	chr3	+	1363	1	ISM	ENSMUSG00000027665.14	ENSMUST00000108243.8	6689	21	67008	66	3002	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	20	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACTGACTATTGGTTTT	8125	False	NA	NA	False	NA	NA	NA	32518827	32520190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_32518800_32520200
58094	chr6	+	1396	1	Intergenic	novelGene_4272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAAATTCCTGAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	146516228	146517624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_146516200_146517600
58097	chr17	-	2635	1	ISM	ENSMUSG00000023845.8	ENSMUST00000041047.4	12052	18	101003	0	51515	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTATGGATTCATCTGA	NA	False	NA	NA	False	NA	NA	NA	17744306	17741671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_17741700_17744300
58100	chr2	+	1638	5	NNC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	68	1	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	62.1867148191637	377	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCGCCCTTACCTTTCGA	7347	False	NA	NA	False	NA	NA	NA	125994128	126007197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_125994498_125996465_125996781_126000329_126000474_126001689_126001949_126006646
58102	chr2	+	1258	8	FSM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	-9	5	-9	-5	multi-exon	FALSE	canonical	3	144	junction_3	14.0393034305954	588	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAAGGCTCTGTGTTCTGC	NA	False	NA	NA	False	NA	NA	NA	29236821	29414800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
58103	chr1	+	1108	12	NNC	ENSMUSG00000041426.13	novel	1704	12	NA	NA	-4	-554	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	29.0121091845947	6	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTCATGCAGCCTACAA	NA	False	NA	NA	False	NA	NA	NA	52884198	52959586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944617_52959441
58104	chr17	-	1845	6	NIC	ENSMUSG00000023460.14	novel	2010	6	NA	NA	-5746	-4	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	106.64783167041	114	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTTGAATTTGCCGTGT	NA	False	NA	NA	False	NA	NA	NA	66813060	66801510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_66802799_66804338_66804444_66805013_66805104_66807304_66807444_66811983_66812174_66813027
58105	chr10	-	3889	5	FSM	ENSMUSG00000037855.16	ENSMUST00000064656.8	4259	5	175	195	-52	-130	multi-exon	FALSE	canonical	3	8	junction_3	4.58257569495584	10	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGCCCCACCCTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	67748317	67722127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_67724922_67725782_67725821_67733263_67733445_67745030_67745790_67748200
58106	chr2	-	835	2	NNC	ENSMUSG00000087547.2	novel	629	2	NA	NA	42	83	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGTGGTGGGAAGAAAGA	8749	False	NA	NA	False	NA	NA	NA	157439198	157437419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157438071_157439014
58108	chr13	+	3793	19	ISM	ENSMUSG00000071252.7	ENSMUST00000168779.3	5051	20	3	279418	3	72397	5prime_fragment	FALSE	canonical	1	2	junction_10	16.7199149386459	40	49	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTGAGCTCTGGGGC	NA	False	NA	NA	False	NA	NA	NA	77283661	77482485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672_77341343_77393319_77393482_77402241_77402337_77407959_77408188_77410007_77410274_77411650_77411802_77415780_77415972_77417880_77418064_77429160_77429272_77446585_77446726_77451414_77451580_77464466_77464692_77471483_77471890_77475985_77476143_77480421_77480578_77482387
58109	chr3	-	2105	13	NNC	ENSMUSG00000027968.12	novel	2121	13	NA	NA	27	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	311.592983714332	1	121	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAACATAATTGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	127346969	127330373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_127330684_127334198_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340683_127340738_127340840_127341010_127341196_127346831
58110	chr3	-	874	8	FSM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	1	0	1	0	multi-exon	FALSE	canonical	3	187	junction_3	22.7497476998793	2053	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	84063092	83995239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
58113	chr11	-	1316	6	FSM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	31	0	31	0	multi-exon	FALSE	canonical	3	479	junction_5	35.6561355169065	1479	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1662	False	NA	NA	False	NA	NA	NA	78402967	78397880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401248_78402722
58114	chrX	+	1335	5	Antisense	novelGene_ENSMUSG00000073243.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	485	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACGTCCACGGGCTGATG	NA	False	NA	NA	False	NA	NA	NA	36472187	36474701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_36472682_36472983_36473186_36473578_36473674_36473912_36474226_36474470
58115	chr15	+	1724	4	FSM	ENSMUSG00000022330.6	ENSMUST00000022952.6	1724	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.1434160364686	85	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCTTGAGATTCATCT	117	False	NA	NA	False	NA	NA	NA	35296243	35303451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_35296614_35300334_35301102_35302057_35302158_35302964
58116	chr19	+	2018	9	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	-14	-166	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	111.268537781351	1	111	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCGCCTCTCCTCCTAGT	4239	False	NA	NA	False	NA	NA	NA	46345359	46363525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356808_46357698_46357768_46360374_46360547_46360624_46360815_46362884
58117	chr5	-	2528	14	Antisense	novelGene_ENSMUSG00000029521.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	138	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAACGGTATTCGACTCC	NA	False	NA	NA	False	NA	NA	NA	111021991	110987967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_110988403_110989072_110989408_110996252_110996366_110996485_110996644_110997462_110997551_111003588_111003708_111006242_111006292_111008728_111008791_111011123_111011222_111013385_111013482_111014133_111014290_111015867_111015958_111019890_111019970_111021341
58118	chr8	+	1570	7	FSM	ENSMUSG00000009630.11	ENSMUST00000009774.11	1469	7	253	-354	253	354	multi-exon	FALSE	canonical	3	909	junction_3	33.4398298772919	318	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAACATTTTTTAACTGT	9118	False	NA	NA	False	NA	NA	NA	34089905	34109823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_34090047_34100682_34100893_34101775_34101950_34105477_34105568_34105693_34105856_34107054_34107174_34109149
58119	chr7	+	1930	4	FSM	ENSMUSG00000070828.11	ENSMUST00000145237.8	1829	4	1	-102	1	102	multi-exon	FALSE	canonical	3	19	junction_1	4.49691252107735	87	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTGAGTTGCTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	11131842	11136347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_11131924_11132578_11133051_11134886_11135047_11135130
58122	chr4	-	1888	13	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	3478	0	101	0	3prime_fragment	FALSE	canonical	1	1	junction_10	15.3539263888934	115	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTTCACCCATCTTC	NA	False	NA	NA	False	NA	NA	NA	141122037	141111920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627_141116842_141117387_141117499_141117652_141117723_141118656_141118831_141119083_141119169_141119835_141119938_141120051_141120137_141121723
58123	chr2	+	1513	10	NNC	ENSMUSG00000000308.15	novel	1620	9	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	69.2217763495539	2	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAGCTGTCTGTGTTAT	1689	False	NA	NA	False	NA	NA	NA	121189144	121194212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121189483_121190059_121190150_121190196_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
58125	chr4	+	2696	19	NNC	ENSMUSG00000036622.16	novel	3882	29	NA	NA	491	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	34.251610757834	3	23	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGTGTCGGCACTGGT	2833	False	NA	NA	False	NA	NA	NA	140724013	140734636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140724111_140726438_140726595_140727653_140727765_140727853_140727901_140727995_140728185_140729194_140729402_140729767_140729858_140729994_140730095_140730209_140730331_140730461_140730587_140731196_140731358_140731492_140731598_140731678_140731759_140732312_140732466_140732576_140732674_140733353_140733578_140733662_140733815_140734063_140734160_140734251
58126	chr7	-	2632	21	Antisense	novelGene_ENSMUSG00000058325.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCGGGCGGAGCGTCGC	NA	False	NA	NA	False	NA	NA	NA	134384915	134272376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_134272572_134326056_134326141_134331744_134331785_134335775_134335834_134339357_134339455_134342713_134342862_134345930_134346069_134346678_134346835_134348155_134348239_134348635_134348770_134355087_134355163_134358601_134358684_134362538_134362663_134365573_134365701_134366946_134367042_134367912_134367993_134373195_134373298_134374018_134374204_134379122_134379220_134384075_134384167_134384474
58127	chr5	+	1947	3	ISM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	1523	-596	1519	596	3prime_fragment	FALSE	canonical	0	0	junction_2	13.5	280	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCGCCCAAACTCCAAGAA	NA	False	NA	NA	False	NA	NA	NA	24057117	24060632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_24057154_24057715_24057759_24058764
58128	chr4	+	1845	4	NIC	ENSMUSG00000037600.17	novel	1699	4	NA	NA	9	-19	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	21.9544984001001	137	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGACCCTAGTTGCAAGCA	5600	False	NA	NA	False	NA	NA	NA	133246402	133258077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_133246423_133255050_133256321_133257141_133257217_133257597
58129	chr6	-	506	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	4	7	4	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	1	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115785704	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
58130	chr17	-	2720	6	ISM	ENSMUSG00000024242.16	ENSMUST00000234585.2	3769	19	26414	8	-15058	-8	3prime_fragment	FALSE	canonical	3	247	junction_1	13.8361844451424	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAACATGCTGTTGCGTA	NA	False	NA	NA	False	NA	NA	NA	80906001	80887953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_80889365_80889990_80890047_80892149_80892221_80900350_80900444_80900519_80900589_80904981
58133	chr13	-	1094	2	NNC	ENSMUSG00000021377.16	novel	1946	5	NA	NA	12396	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAAGTGTCTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	47239417	47238264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_47238771_47238829
58134	chr9	+	2006	5	NIC	ENSMUSG00000010051.16	novel	2706	5	NA	NA	-3	5642	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	13.8089644796415	17	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAAGTTTGTCCTCACC	NA	False	NA	NA	False	NA	NA	NA	107454153	107464551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_107454278_107454751_107455676_107456079_107456170_107463580_107463671_107463773
58135	chr11	+	952	3	NIC	ENSMUSG00000086841.2	novel	462	5	NA	NA	2	-10	intron_retention	FALSE	canonical	3	3662	junction_1	536.5	187	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAACCAGATTGCCAGT	NA	False	NA	NA	False	NA	NA	NA	62493704	62495623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62493850_62494060_62494473_62495228
58137	chr8	-	1967	10	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	54040	13658	434	-14	internal_fragment	FALSE	canonical	3	6	junction_9	8.83735058895475	45	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGGCTTTCATTGTG	NA	False	NA	NA	False	NA	NA	NA	117755148	117736075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556_117743743_117746143_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017
58138	chr11	-	835	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	-23	1	-23	-1	multi-exon	FALSE	canonical	3	574	junction_1	0	1712	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATGTGTATGAATGC	5161	False	NA	NA	False	NA	NA	NA	51579503	51576213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_51576920_51579374
58139	chr15	+	1685	7	NIC	ENSMUSG00000001285.13	novel	1480	7	NA	NA	7	-5	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	186.998811642095	7	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAACTGACCCAGTCCCTG	5945	False	NA	NA	False	NA	NA	NA	102240161	102246281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102240389_102240524_102241154_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
58140	chr2	+	934	6	NNC	ENSMUSG00000026799.16	novel	1686	5	NA	NA	1	-37	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	83.7820983265518	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCTCTCTTTCAAATT	NA	False	NA	NA	False	NA	NA	NA	29236845	29367594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29237060_29239857_29240003_29303399_29303517_29361291_29361399_29365549_29365651_29367344
58141	chr12	-	2488	10	NNC	ENSMUSG00000002996.18	novel	3142	11	NA	NA	-3606	-251	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	104.803519873036	1	137	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACACTATATTCTTGTATA	2967	False	NA	NA	False	NA	NA	NA	31994012	31976503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984303_31984441_31986970_31987084_31987168_31987281_31987616_31987719_31990276_31990506_31993831
58142	chr10	+	882	6	NIC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	-11	-3	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	1028.12695714099	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAAACTGTGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	128158402	128163053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128158588_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
58143	chr7	-	1662	2	FSM	ENSMUSG00000057894.11	ENSMUST00000129647.2	684	2	108	-1086	108	-5	multi-exon	FALSE	canonical	3	4	junction_1	0	36	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGACTCTGATTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	12541894	12538913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12540520_12541838
58144	chr4	-	972	1	Genic_Genomic	ENSMUSG00000084807.2	novel	NA	NA	NA	NA	445	726	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGATTAAACTCCGACAC	NA	False	NA	NA	False	NA	NA	NA	149864726	149863754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_149863800_149864700
58146	chr13	-	1153	8	NNC	ENSMUSG00000021484.9	novel	4315	8	NA	NA	0	-152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	862.149212901179	4	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTTCTTGCCCAGCTG	3011	False	NA	NA	False	NA	NA	NA	55510424	55494557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499267_55499513_55499604_55500758_55500877_55509933_55510053_55510200
58148	chr5	+	706	4	Antisense	novelGene_ENSMUSG00000029111.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCGCGGGGCGGGGTCTCG	NA	False	NA	NA	False	NA	NA	NA	34060728	34093665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_34060807_34077837_34078000_34079191_34079362_34093369
58149	chr11	-	1189	5	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	616.335288215757	10	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	115977761	115969398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115969816_115969893_115970348_115973097_115973238_115974664_115974774_115977692
58150	chr4	+	2932	12	Antisense	novelGene_ENSMUSG00000028838.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGGTATCAAGTCGG	NA	False	NA	NA	False	NA	NA	NA	134084113	134099845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_134085141_134085287_134085460_134086397_134086553_134087052_134087149_134087844_134087931_134089609_134089718_134089892_134090029_134090395_134090520_134091897_134091999_134092207_134092299_134098267_134099050_134099791
58151	chr1	-	2394	2	ISM	ENSMUSG00000026193.16	ENSMUST00000190780.7	7694	44	25517	38822	-3311	5111	internal_fragment	FALSE	canonical	3	1773	junction_1	0	4	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCGACGCTCCCACTAA	NA	False	NA	NA	False	NA	NA	NA	71666814	71663504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71665406_71666321
58152	chr19	-	1961	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	17	14	-8	-9	multi-exon	FALSE	canonical	3	124	junction_2	7.26907877057606	409	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTGGCATTTCAATTCA	NA	False	NA	NA	False	NA	NA	NA	47525541	47489485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
58153	chr10	-	1636	6	Genic_Genomic	ENSMUSG00000112654.2	novel	1018	4	NA	NA	-647	23070	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCCGAGCGTCCGCGCA	NA	False	NA	NA	False	NA	NA	NA	21218603	21171916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_21172074_21175074_21175141_21180426_21180541_21183481_21183677_21212863_21212971_21217606
58154	chr11	+	1304	11	NNC	ENSMUSG00000001100.11	novel	2054	11	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	349.648680821192	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	1779	False	NA	NA	False	NA	NA	NA	78403162	78412997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412055_78412657
58155	chr9	+	1737	13	NNC	ENSMUSG00000032078.18	novel	2984	14	NA	NA	-3	73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	204.765092375521	1	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCACAGGTGAAGACGCCA	NA	False	NA	NA	False	NA	NA	NA	46184487	46192855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188198_46189583_46189713_46190966_46191054_46191213_46191280_46192335
58156	chr12	-	1687	6	NNC	ENSMUSG00000112977.2	novel	690	5	NA	NA	-6772	886	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.78567765543682	648	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACACCATGTGCGAGATG	NA	False	NA	NA	False	NA	NA	NA	109489438	109458568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_109459556_109472761_109472866_109480759_109480854_109482537_109482667_109488933_109489091_109489222
58157	chr2	-	1039	1	NIC	ENSMUSG00000087547.2	novel	629	2	NA	NA	0	-699	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGGCACACACACCCCAA	8707	False	NA	NA	False	NA	NA	NA	157439240	157438201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_157438200_157439200
58158	chr8	-	1515	7	NNC	ENSMUSG00000039067.6	novel	1581	7	NA	NA	31	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1226.82920118853	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTGGTTTTTATGTC	NA	False	NA	NA	False	NA	NA	NA	108315059	108307027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_108307942_108309013_108309106_108310804_108310886_108311494_108311589_108312336_108312430_108313256_108313349_108314910
58159	chr1	+	1931	8	FSM	ENSMUSG00000026563.14	ENSMUST00000027846.8	2215	8	284	0	42	0	multi-exon	FALSE	canonical	3	160	junction_4	12.2357789173508	240	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTCCTGTTTATTCAA	NA	False	NA	NA	False	NA	NA	NA	166206949	166221190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_166207046_166209695_166209788_166209965_166210032_166214234_166214333_166216130_166216341_166217404_166217557_166219391_166219555_166220136
58160	chr6	-	1216	2	Genic_Genomic	ENSMUSG00000051695.7	novel	1830	1	NA	NA	347	-16	multi-exon	FALSE	canonical	0	0	junction_1	0	15	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTGGTTAAAAATGCTTC	NA	False	NA	NA	False	NA	NA	NA	86502956	86501489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_86502324_86502574
58161	chr8	+	1885	1	Antisense	novelGene_ENSMUSG00000031651.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTAATACCTATACTGCC	NA	False	NA	NA	False	NA	NA	NA	43591126	43593011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43591100_43593000
58162	chr6	-	1868	9	NNC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-13	-24	intron_retention	FALSE	non_canonical	0	0	junction_5	144.676362962303	10	83	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTCATTTTTTAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	113354350	113343639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351749_113352221_113352800_113353026_113353852_113353907_113354276
58163	chr2	-	1258	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	2	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACATCCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	152185902	152179350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179701_152180409_152180608_152181634_152181928_152184956_152185248_152185776
58164	chr1	-	888	5	NNC	ENSMUSG00000026234.13	novel	3072	12	NA	NA	-13	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2830.91155813812	299	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTTGCCAGACTTAATA	NA	False	NA	NA	False	NA	NA	NA	86287099	86278222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278593_86284830_86285175_86285828_86285946_86286927
58165	chr1	-	1115	7	NNC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	17	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	485.026259312032	2	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAATTGTCCTTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	10108335	10095059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_10095289_10097327_10097477_10100823_10100936_10103482_10103535_10104215_10104362_10105153_10105389_10108143
58166	chr15	+	1584	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	-3	665	-3	84	multi-exon	FALSE	canonical	3	46	junction_1	6.01560470775798	168	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCAGTTTGGATCTTCT	9240	False	NA	NA	False	NA	NA	NA	76585661	76587774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
58167	chr2	-	3674	1	FSM	ENSMUSG00000074743.5	ENSMUST00000099270.5	3723	1	35	14	35	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	13	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTACTGATGGATGTCTC	NA	False	NA	NA	False	NA	NA	NA	148250073	148246399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_148246400_148250100
58168	chr11	-	1721	9	NNC	ENSMUSG00000015837.16	novel	2673	8	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	260.185030314966	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGCCCTGTGATCCGTA	NA	False	NA	NA	False	NA	NA	NA	50101614	50090983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50091399_50091555_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
58169	chr1	-	3956	8	FSM	ENSMUSG00000016200.15	ENSMUST00000195354.6	7882	8	107	3819	-6	934	multi-exon	FALSE	canonical	3	7	junction_1	6	4	127	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATTGGGAAAAGCCCCC	235	False	NA	NA	False	NA	NA	NA	192717976	192577359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_192579929_192584059_192584250_192612785_192613236_192615421_192615694_192662653_192662870_192669025_192669191_192709277_192709326_192717930
58170	chr15	-	1783	9	FSM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	164	11	164	-11	multi-exon	FALSE	canonical	3	49	junction_8	4.93552175559991	103	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTTTGCTATGTATGCA	6056	False	NA	NA	False	NA	NA	NA	101912753	101905143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_101905569_101906094_101906154_101906287_101906509_101906825_101906952_101907208_101907374_101907865_101907962_101909014_101909076_101909851_101910061_101912332
58171	chr11	-	2787	1	Antisense	novelGene_ENSMUSG00000078706.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGGGAGGGGCGAGGCC	2848	False	NA	NA	False	NA	NA	NA	96144795	96142008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_96142000_96144800
58172	chr11	+	1197	3	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5603.5	1	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGATGTCCAGATTGCA	4058	False	NA	NA	False	NA	NA	NA	100210811	100212921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100210987_100211491_100211680_100212087
58173	chr3	-	898	11	NNC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	647.55170449934	47	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTAGTCCTTACGTTG	NA	False	NA	NA	False	NA	NA	NA	54642451	54636100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639602_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
58174	chr2	-	2346	9	FSM	ENSMUSG00000027199.15	ENSMUST00000028624.9	2389	9	33	10	33	-10	multi-exon	FALSE	canonical	2	6	junction_3	2.5	25	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTTTATGAGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	122441751	122424957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_122426091_122427852_122427970_122428617_122428682_122430859_122431025_122431172_122431311_122432985_122433177_122434062_122434259_122440149_122440369_122441628
58175	chr3	+	1111	9	ISM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	27	5400	27	-5400	5prime_fragment	FALSE	canonical	3	238	junction_8	31.8352693564857	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGAGTTGAAATATCGCC	NA	False	NA	NA	False	NA	NA	NA	55089475	55111978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754
58176	chr2	-	2139	5	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	-1	6	intron_retention	FALSE	canonical	3	34	junction_2	22.599778759979	9	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTTTTAAATCTGTG	8326	False	NA	NA	False	NA	NA	NA	158203463	158197698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
58177	chr3	-	2021	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	22.6377811589932	136	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCCTGGCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	88410614	88390511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
58178	chr6	+	1706	11	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	-4	-284	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	74.5318723768563	55	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAATAAATGCAGTTAGC	NA	False	NA	NA	False	NA	NA	NA	115521658	115555305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_115521690_115524782_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
58180	chr11	+	1075	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	28	3	0	1	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	3602	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	NA	False	NA	NA	NA	101144560	101150372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
58182	chr7	-	1784	10	ISM	ENSMUSG00000057177.13	ENSMUST00000071739.12	2260	11	2111	2	2111	-2	3prime_fragment	FALSE	canonical	3	363	junction_8	12.2090838474908	215	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTGTCTGGCTGCCTG	NA	False	NA	NA	False	NA	NA	NA	24935165	24927684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_24928356_24928889_24928998_24929275_24929466_24930029_24930126_24930209_24930308_24931059_24931167_24931258_24931390_24932998_24933110_24933252_24933337_24934977
58183	chr1	-	2935	3	FSM	ENSMUSG00000043467.20	ENSMUST00000171748.3	2141	3	-84	-710	-84	546	multi-exon	FALSE	canonical	0	0	junction_1	2	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGCTGGTGACTCCAA	NA	False	NA	NA	False	NA	NA	NA	160861938	160846282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160847977_160859374_160860335_160861657
58184	chr11	-	1212	3	NNC	ENSMUSG00000085156.9	novel	1540	2	NA	NA	19	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218	49	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAATAAATAGAAATGAG	NA	False	NA	NA	False	NA	NA	NA	6478744	6475616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6475624_6477366_6478375_6478547
58185	chr14	+	1305	3	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4474	-58818	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_2	76	55	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGGCAGTTACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	41761477	41766958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41761595_41761988_41762060_41765841
58186	chr4	-	486	3	ISM	ENSMUSG00000078350.12	ENSMUST00000146054.8	707	4	190	265	6	5	5prime_fragment	FALSE	canonical	3	33	junction_1	0	4	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCACTCAGGTCTAACCT	NA	False	NA	NA	False	NA	NA	NA	154110417	154108032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_154108349_154109960_154110079_154110365
58187	chr16	-	1332	5	FSM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	-5	6	-5	-6	multi-exon	FALSE	canonical	3	276	junction_1	13.865424623862	1190	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTCATTTGTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	90524297	90516205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_90516867_90517541_90517639_90518523_90518647_90523180_90523248_90523913
58188	chr5	-	2597	16	NNC	ENSMUSG00000040302.18	novel	2368	5	NA	NA	-29442	-4001	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCCGAAGCTCTAGGGGG	NA	False	NA	NA	False	NA	NA	NA	3676027	3646257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_3646366_3653230_3653373_3654792_3654877_3655429_3655547_3655642_3656410_3657665_3657787_3659853_3659977_3660177_3660289_3662880_3662963_3665073_3665206_3668814_3668912_3670592_3670765_3672231_3672386_3673938_3674129_3674417_3674585_3675997
58189	chr17	+	1470	3	NIC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5194	-1	intron_retention	FALSE	canonical	3	421	junction_1	1	572	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAGCCTGTTGAGTCATT	NA	False	NA	NA	False	NA	NA	NA	48042962	48045406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_48044037_48044681_48044781_48045109
58190	chr3	-	1973	11	Antisense	novelGene_ENSMUSG00000042626.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACTTCCGGCCTCACTA	5949	False	NA	NA	False	NA	NA	NA	89336391	89325891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89326036_89330800_89330877_89331001_89331114_89331487_89331550_89331860_89331912_89332070_89332197_89333818_89334006_89334088_89334163_89334243_89334378_89334514_89334753_89335622
58192	chr14	+	2063	5	NIC	ENSMUSG00000054763.10	novel	1909	4	NA	NA	-39	2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	17.3835410661925	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGAGTCCGGGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	63284400	63295600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_63284500_63284892_63285068_63285676_63285752_63293215_63293402_63294072
58193	chr11	-	1595	1	Intergenic	novelGene_2466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGATAGTGGTGCTGAG	7277	False	NA	NA	False	NA	NA	NA	96706139	96704544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_96704500_96706100
58195	chr1	+	2369	4	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	5	-54	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	607.115767836379	1	129	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTTTTCCTATCTGCAT	NA	False	NA	NA	False	NA	NA	NA	180720677	180726614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722423_180725075
58198	chr9	+	3833	21	NNC	ENSMUSG00000041444.15	novel	540	6	NA	NA	-20266	-3601	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_17	9.86458311334037	34	129	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGAGGCCTGCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	32007165	32168913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_32007215_32040865_32040975_32063217_32063310_32064335_32064421_32081385_32081473_32093137_32093276_32097624_32097718_32098929_32099053_32101279_32101358_32119479_32119562_32150557_32150708_32156447_32156551_32157213_32157359_32157742_32157826_32158403_32158512_32158781_32158928_32159675_32159872_32161979_32162084_32165362_32165435_32166469_32167355_32168008
58199	chr1	-	1000	7	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.74535599249993	1	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCCGCCCCTCCACGC	434	False	NA	NA	False	NA	NA	NA	87155702	87142045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87142216_87147300_87147416_87148639_87148775_87152072_87152178_87153569_87153723_87153816_87153956_87155519
58202	chr17	+	2527	8	ISM	ENSMUSG00000034673.15	ENSMUST00000038149.13	3068	9	1318	20	186	-20	3prime_fragment	FALSE	canonical	3	22	junction_2	4.16986271980755	57	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATATTTCTTTTTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	34812554	34816354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34812620_34812840_34813089_34813211_34813403_34813555_34813692_34813774_34813929_34814238_34814328_34814601_34814689_34814797
58203	chr5	-	574	4	NNC	ENSMUSG00000009013.6	novel	2030	3	NA	NA	0	5551	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1890.85289397845	21	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTTAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	115438993	115429617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115429625_115436566_115436893_115438571_115438710_115438890
58204	chr9	-	643	2	Genic_Genomic	ENSMUSG00000058443.6	novel	768	1	NA	NA	-17	-20	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256285	50255520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_50255835_50255956
58205	chr1	-	2086	12	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	15	-9	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	156.020077114485	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTTATTAAGAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	171115513	171109540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113922_171114544_171115334
58207	chr3	+	1799	3	NIC	ENSMUSG00000039887.12	novel	2037	4	NA	NA	-12	-118	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	36	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACATGAAGAAAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	121085409	121156625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_121085633_121092252_121092408_121155204
58208	chr17	-	1269	9	NNC	ENSMUSG00000024043.14	novel	5322	18	NA	NA	-9	-2767	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	13.2853302555864	1	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGACCCTGCAGTGAAA	NA	False	NA	NA	False	NA	NA	NA	68311124	68178724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_68178776_68178877_68179044_68180017_68180161_68182568_68182654_68188430_68188521_68191713_68191804_68203043_68203262_68208276_68208468_68310889
58209	chr5	+	3046	23	Antisense	novelGene_ENSMUSG00000107109.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	101	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACCCCTTCTCTGCCCCG	NA	False	NA	NA	False	NA	NA	NA	73255585	73413958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_73255769_73257284_73257378_73257630_73257815_73258796_73259037_73262019_73262126_73265304_73265440_73265815_73265985_73267528_73267612_73269701_73269815_73270091_73270198_73275828_73275932_73277163_73277264_73279208_73279299_73279554_73279727_73282026_73282107_73282857_73282938_73289813_73289918_73290595_73290729_73293661_73293717_73305358_73305572_73352333_73352457_73378250_73378419_73413745
58210	chr5	-	1618	5	NNC	ENSMUSG00000053553.12	novel	1429	5	NA	NA	1760	-2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	308.590647136299	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGACTTTTTGCCTG	NA	False	NA	NA	False	NA	NA	NA	139444497	139345495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139444272
58211	chr8	-	1628	10	NNC	ENSMUSG00000031816.16	novel	1366	10	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_9	30.5448466082413	146	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCTGCTTGTATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	121835049	121824296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121834729_121834860_121835026
58212	chr18	-	1786	11	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	-18	756	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	596.16075852072	565	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGCCTTATATTAGTAT	NA	False	NA	NA	False	NA	NA	NA	77855504	77844510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77844969_77845178_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77852241_77852454_77854563_77854739_77855419
58213	chr19	+	1207	8	Antisense	novelGene_ENSMUSG00000024799.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGATCTTTAAATGGACGC	4163	False	NA	NA	False	NA	NA	NA	6112851	6117870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_6113103_6113352_6113481_6113559_6113636_6113849_6114020_6114107_6114227_6116265_6116444_6116527_6116615_6117672
58214	chr19	+	930	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	60	0	-3	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	470	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9381	False	NA	NA	False	NA	NA	NA	6919928	6929261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
58215	chr11	-	1584	2	NNC	ENSMUSG00000085156.9	novel	1540	2	NA	NA	-39	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	0	133	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTCCAGCTGTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	6478818	6475599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6475672_6477306
58216	chr9	-	1551	8	NIC	ENSMUSG00000032298.14	novel	1170	9	NA	NA	15	2	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	17.1963451266333	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGGTACTTCTTGGGC	NA	False	NA	NA	False	NA	NA	NA	57054303	57050081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57050611_57050734_57050898_57051262_57051291_57051470_57051599_57051921_57052022_57052228_57052293_57052381_57052502_57053884
58217	chr11	-	1669	6	NIC	ENSMUSG00000056962.12	novel	1668	6	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	113.206713581837	367	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	116734314	116728257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116728590_116729815_116729955_116731273_116731372_116731894_116732182_116733157_116733547_116733890
58218	chr2	+	2300	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	83	5	15	-5	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	1	123	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACATGCCATCTAGTCT	NA	False	NA	NA	False	NA	NA	NA	25390844	25395478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
58219	chrX	-	2090	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	42	51	-22	0	multi-exon	FALSE	canonical	3	26	junction_12	47.4332864839309	70	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	149597299	149589416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
58220	chr11	-	2208	12	FSM	ENSMUSG00000001095.6	ENSMUST00000001122.6	2412	12	-11	215	-11	-215	multi-exon	FALSE	canonical	1	1	junction_6	4.88884714899955	37	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGGGTGTGTTTCCCGGT	NA	False	NA	NA	False	NA	NA	NA	78313054	78288127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78288682_78289116_78289255_78289857_78290020_78290909_78291032_78291301_78291391_78291569_78291789_78293897_78294021_78294139_78294312_78295203_78295404_78295496_78295634_78297635_78297765_78312891
58221	chr19	-	1145	11	NNC	ENSMUSG00000025228.6	novel	2757	11	NA	NA	-4	-1188	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	92.117316504553	1	22	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAAAACTCGCTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	46384141	46366767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370797_46372646_46372785_46373451_46373528_46375890_46375956_46384068
58223	chr18	+	1096	1	FSM	ENSMUSG00000092819.3	ENSMUST00000175078.3	132	1	-273	-691	-273	691	mono-exon	FALSE	NA	NA	NA	NA	NA	368	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGTGTATGTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	33927943	33929039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_33927900_33929000
58224	chr4	-	2766	1	NIC	ENSMUSG00000038544.15	novel	3237	5	NA	NA	12	-54	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAACCTCTGCCCAAACTG	12	True	NA	NA	False	NA	NA	NA	59783826	59781060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_59781100_59783800
58225	chrX	+	935	5	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	19	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1038.10211443769	2	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCACTTTTTGAATTCT	NA	False	NA	NA	False	NA	NA	NA	52077032	52110534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097600_52110055
58226	chr3	+	2466	13	NNC	ENSMUSG00000070385.13	novel	751	6	NA	NA	-7498	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	5.83749851296674	21	19	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACACCGCGAGTGGGTTTT	9704	False	NA	NA	False	NA	NA	NA	102993596	103007033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102993869_102994149_102994628_102995632_102995853_102997360_102997491_102998459_102998655_102998932_102999065_102999616_102999781_103001715_103001843_103002029_103002194_103002957_103003079_103005985_103006160_103006341_103006453_103006855
58227	chr6	-	1667	3	ISM	ENSMUSG00000079477.10	ENSMUST00000113597.8	1859	7	14673	-332	14673	-5	3prime_fragment	FALSE	canonical	3	1571	junction_1	52	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGCTGCTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	87982092	87976092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87977513_87981152_87981282_87981974
58228	chr16	-	1359	4	NIC	ENSMUSG00000022540.17	novel	1355	11	NA	NA	-261	0	intron_retention	FALSE	canonical	3	479	junction_2	15.9373774505092	5	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	515	False	NA	NA	False	NA	NA	NA	4828786	4826593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4827117_4827341_4827469_4827764_4828018_4828330
58229	chr11	+	1629	8	NNC	ENSMUSG00000056938.17	novel	961	8	NA	NA	3	-1	intron_retention	FALSE	non_canonical	3	16	junction_7	51.8620619469353	69	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTGCTGTCTGGGAA	NA	False	NA	NA	False	NA	NA	NA	102992540	103003022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102992615_102993507_102993923_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995359_103002437
58230	chr8	+	2559	4	ISM	ENSMUSG00000031826.21	ENSMUST00000143615.8	2129	11	-24	9217	-5	2006	5prime_fragment	FALSE	canonical	3	816	junction_3	406.879452527267	10	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTTTGCCTGCATGT	8822	False	NA	NA	False	NA	NA	NA	120637547	120670149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848
58231	chr15	-	1077	3	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	0	141	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1522.5	30	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCAGCTGTGCCTGATT	4906	False	NA	NA	False	NA	NA	NA	81931799	81925537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81926382_81928097_81928219_81931687
58232	chr13	+	1077	7	NNC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	420	-3735	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	528.781513376639	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGACTGGATTATTGTA	NA	False	NA	NA	False	NA	NA	NA	92491653	92521826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232_92521312_92521426
58233	chr10	-	2465	4	Genic_Genomic	ENSMUSG00002076974.1	novel	105	1	NA	NA	-630	8924	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGAAGACCCCGAACCAG	NA	False	NA	NA	False	NA	NA	NA	41284903	41275244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_41275344_41275667_41275886_41278225_41278294_41282823
58234	chr5	+	2824	3	FSM	ENSMUSG00000018143.11	ENSMUST00000018287.10	2849	3	18	7	-3	-7	multi-exon	FALSE	canonical	3	22	junction_1	1.5	46	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGATGCTTCTGGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	139777285	139788401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139777468_139784893_139784974_139785839
58235	chr5	+	3442	7	NIC	ENSMUSG00000064247.15	novel	1346	8	NA	NA	-117	-4	intron_retention	FALSE	canonical	0	0	junction_4	0.763762615825973	15	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGAAATTTGTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	110248170	110253810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110248367_110248881_110248972_110249253_110249391_110249665_110249795_110250041_110250198_110250311_110250496_110251260
58236	chr17	-	1424	11	ISM	ENSMUSG00000024012.19	ENSMUST00000234507.2	1653	12	4436	6	73	2	3prime_fragment	FALSE	canonical	3	492	junction_4	209.043057765619	299	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGACTTCTGTGCAAGCC	NA	False	NA	NA	False	NA	NA	NA	29561831	29551055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796
58237	chr9	-	1316	2	Intergenic	novelGene_1117	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAATAAAGCTGGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	78431261	78429842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_78430214_78430316
58238	chr1	+	3311	8	Antisense	novelGene_ENSMUSG00002075545.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	131	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTGGCTCCTCGGGG	8941	False	NA	NA	False	NA	NA	NA	74610494	74627187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_74611743_74612697_74612876_74614937_74615763_74617280_74617447_74618483_74618757_74624527_74624857_74626722_74626910_74627082
58239	chr19	+	2272	8	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	2554	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	177.541946753839	1	125	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACTACTTGATGTCTTT	NA	False	NA	NA	False	NA	NA	NA	60803031	60824668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60803247_60805968_60806049_60809644_60809794_60810723_60810845_60814268_60814370_60819224_60819333_60821023_60821117_60823263
58240	chr16	-	1345	12	NNC	ENSMUSG00000058240.15	novel	1727	12	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	618.589424443271	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACTGCTTTCAGCAA	9210	False	NA	NA	False	NA	NA	NA	91525481	91486416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497949_91498094_91504112_91504182_91509078_91509156_91511636_91511715_91514291_91514364_91525445
58241	chr9	+	838	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	-59	-4	-59	0	multi-exon	FALSE	canonical	3	323	junction_6	112.305634567263	246	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	26910946	26918630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
58242	chr17	-	1461	1	Intergenic	novelGene_57	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAATGGCTAAGGCCACGT	7658	False	NA	NA	False	NA	NA	NA	17543065	17541604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17541600_17543100
58243	chr17	+	1590	4	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	4622	-1	4620	1	3prime_fragment	FALSE	canonical	3	283	junction_1	65.5303152916436	1391	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCTGTTGAGTCATTTG	NA	False	NA	NA	False	NA	NA	NA	48042388	48045408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_48043430_48043885_48044037_48044681_48044781_48045109
58244	chr5	+	2073	11	ISM	ENSMUSG00000005373.14	ENSMUST00000153519.8	3207	17	-6	4315	3	-1003	intron_retention	FALSE	canonical	3	18	junction_10	3.48711915483254	1	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCTCCCCCTCAAACTG	3423	False	NA	NA	False	NA	NA	NA	135135760	135162461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135136070_135142480_135142588_135150359_135150443_135150589_135150680_135150923_135150969_135152503_135152706_135152790_135152872_135157366_135157552_135161168_135161716_135161962_135162031_135162105
58245	chr17	+	2867	11	ISM	ENSMUSG00000024036.17	ENSMUST00000235564.2	2529	19	19050	0	-702	0	intron_retention	FALSE	canonical	3	93	junction_3	9.94786409235671	3	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAAGCCCAC	NA	False	NA	NA	False	NA	NA	NA	31543898	31569669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328
58246	chr8	-	1191	7	FSM	ENSMUSG00000000739.15	ENSMUST00000000755.15	3805	7	-45	2659	0	-2	multi-exon	FALSE	canonical	3	57	junction_6	18.7764628073435	388	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATACAGACTCTGTCCCA	9698	False	NA	NA	False	NA	NA	NA	123885054	123869589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884327_123884926
58247	chr4	-	1587	10	FSM	ENSMUSG00000028670.15	ENSMUST00000067567.5	1626	10	33	6	-5	-6	multi-exon	TRUE	canonical	3	407	junction_1	24.7476149243608	92	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCAGGGCTCCCTTATGT	NA	False	NA	NA	False	NA	NA	NA	135699904	135695540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
58248	chr11	-	1013	4	FSM	ENSMUSG00000032892.15	ENSMUST00000132093.8	967	4	-66	20	-12	-6	multi-exon	FALSE	canonical	3	482	junction_1	54.6036221834738	34	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCTTTATGAAGAACATAA	7224	False	NA	NA	False	NA	NA	NA	68864681	68863329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_68863855_68863942_68864100_68864266_68864384_68864467
58249	chr7	-	3160	13	NIC	ENSMUSG00000030630.17	novel	1585	14	NA	NA	11	-8	intron_retention	FALSE	canonical	3	97	junction_9	7.52172778614654	1	103	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGAAATCTCTGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	84255101	84234374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84250035_84250240_84250363_84251288_84251400_84254850
58250	chr4	-	2581	8	FSM	ENSMUSG00000037553.15	ENSMUST00000084238.5	4580	8	296	1703	296	1667	multi-exon	FALSE	canonical	3	285	junction_4	22.238961949053	115	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAGCTGATTTGCTTTGC	NA	False	NA	NA	False	NA	NA	NA	133360484	133334312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133336085_133337680_133337794_133340233_133340337_133340949_133340999_133341111_133341250_133342490_133342641_133354510_133354672_133360389
58251	chr12	-	1868	6	ISM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	10802	346	-473	39	3prime_fragment	FALSE	canonical	3	114	junction_5	16.4073154415949	137	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGTATGAGCTTCTATT	618	False	NA	NA	False	NA	NA	NA	85187236	85182368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117
58252	chr19	+	1306	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	-139	15	-139	-14	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	885	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAGCATCGAAAACTGAG	8329	False	NA	NA	False	NA	NA	NA	47843269	47853214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
58253	SIRV6	+	1080	9	NNC	SIRV6A	novel	1088	9	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_4	8239.38325968637	2	52	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1130	11331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_1845_2019_2470_2621_2740_2829_3106_3165_10724_10819_11031
58255	chrX	-	1453	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_7	44.1518714790442	340	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCAGGTCTTCACTGT	NA	False	NA	NA	False	NA	NA	NA	101898222	101891240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898002
58256	chr7	-	2599	3	Antisense	novelGene_ENSMUSG00000054715.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGACACTTCCAAAGGCGT	NA	False	NA	NA	False	NA	NA	NA	12642152	12631785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_12631908_12637527_12638011_12640158
58257	chr1	-	1747	1	Antisense	novelGene_ENSMUSG00000101599.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGAAGTACTCTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	63158650	63156903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_63156900_63158600
58259	chr15	+	1142	4	NNC	ENSMUSG00000063236.7	novel	1111	4	NA	NA	3	0	intron_retention	FALSE	canonical	1	4	junction_2	120.808388229736	1234	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGTGTGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	76832724	76834932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76833120_76833267_76833384_76833743_76833891_76834448
58260	chr4	+	1997	3	FSM	ENSMUSG00000044496.7	ENSMUST00000103232.2	2731	3	733	1	733	-1	multi-exon	FALSE	canonical	3	503	junction_1	12.5	185	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTACTGGTCTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	148026084	148031770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_148026515_148029064_148029919_148031057
58261	chr6	-	1188	5	NNC	ENSMUSG00000023456.17	novel	1607	7	NA	NA	1	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	816.80413808942	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGGGTTGTCATAAT	NA	False	NA	NA	False	NA	NA	NA	124791116	124787677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124789339_124789500_124789583_124789669_124789752_124789877_124790970
58264	chr2	+	348	2	Intergenic	novelGene_2782	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGGGAACCTCGGAAACCC	1370	False	NA	NA	False	NA	NA	NA	166275867	166279598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_166276134_166279516
58265	chr2	-	752	1	Intergenic	novelGene_2761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTTTTTTCTTGAGGGG	NA	False	NA	NA	False	NA	NA	NA	160495412	160494660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_160494700_160495400
58267	chr11	-	3609	2	Antisense	novelGene_ENSMUSG00000034757.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTCCCCGCCTTGTACTG	5709	False	NA	NA	False	NA	NA	NA	102179568	102175755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_102178696_102178899
58269	chr10	+	323	1	Intergenic	novelGene_3535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTAAATTCTTACC	NA	False	NA	NA	False	NA	NA	NA	117201643	117201966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_117201600_117202000
58271	chr1	+	1194	3	Intergenic	novelGene_474	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	8.5	141	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACTCAAAGCCTTCTTTG	536	False	NA	NA	False	NA	NA	NA	161705404	161711106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_161705610_161708770_161709410_161710756
58272	chrX	-	2510	14	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	47734	37495	-5213	-9078	internal_fragment	FALSE	canonical	3	149	junction_2	19.0409089336027	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCAGCTGTCTCCTGTTA	2607	False	NA	NA	False	NA	NA	NA	40953044	40921362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905
58274	chr15	-	1722	10	ISM	ENSMUSG00000042632.18	ENSMUST00000166977.9	3365	16	21876	0	-585	0	3prime_fragment	FALSE	canonical	3	30	junction_8	59.2604629507381	1	83	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	79190500	79170427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483
58279	chr18	+	2064	5	ISM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	-3	85328	3	16347	5prime_fragment	FALSE	canonical	3	40	junction_3	4.32290411644765	91	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGATTGGCTTTATGT	NA	False	NA	NA	False	NA	NA	NA	25302073	25338637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917
58280	chr2	+	1815	6	ISM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	39	6516	-4	-14	5prime_fragment	FALSE	canonical	3	70	junction_4	9.64157663455516	42	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCCCTGGCTCCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	128907900	128931687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913
58281	chr13	+	1513	2	Intergenic	novelGene_1563	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	27	junction_1	0	7	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTCAAGATCTTTTGTAA	1852	False	NA	NA	False	NA	NA	NA	113872531	113876370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113872828_113875153
58282	chr4	-	1958	5	NIC	ENSMUSG00000041193.16	novel	2131	6	NA	NA	3	-5	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	34.679785178112	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGAATTCACATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	138590757	138526564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_138527973_138528662_138528770_138533495_138533546_138546310_138546427_138590480
58283	chr6	-	1206	5	NIC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	5	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	376.612118100308	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCATTTTCTGACTAA	NA	False	NA	NA	False	NA	NA	NA	33037147	32769159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_33036934
58284	chr10	+	1281	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	1	2	1	-2	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	592	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTGTTCTCGTTGTATTT	249	False	NA	NA	False	NA	NA	NA	80765907	80768036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
58286	chr2	+	2021	13	FSM	ENSMUSG00000003283.16	ENSMUST00000189688.2	2090	13	59	10	59	-10	multi-exon	FALSE	canonical	3	76	junction_9	8.17346655682615	122	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTTCCCCAAGGGTCAGC	NA	False	NA	NA	False	NA	NA	NA	152950446	152993349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152950675_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
58287	chr4	+	1740	7	ISM	ENSMUSG00000062064.7	ENSMUST00000059893.8	1578	12	8865	-542	9	542	3prime_fragment	FALSE	canonical	3	15	junction_6	2.35702260395516	58	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTATTTGGGCTCCGGTTC	1371	False	NA	NA	False	NA	NA	NA	150242293	150253481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_150242665_150242931_150243123_150244475_150244587_150247654_150247757_150249565_150249642_150250811_150250940_150252720
58288	chr3	-	1542	2	NIC	ENSMUSG00000028062.16	novel	668	4	NA	NA	-36	0	intron_retention	FALSE	canonical	3	2861	junction_1	0	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1072	False	NA	NA	False	NA	NA	NA	88460236	88457125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88458093_88459661
58290	chr17	+	1609	2	ISM	ENSMUSG00000003279.18	ENSMUST00000233780.2	1738	3	125	2682	125	-4	5prime_fragment	FALSE	canonical	3	9	junction_1	0	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAATTGACTAA	8656	False	NA	NA	False	NA	NA	NA	71116191	71123714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71116275_71122188
58291	chr3	+	915	5	NNC	ENSMUSG00000041355.14	novel	560	5	NA	NA	577	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2092.84117588985	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCGATGTGTTTGTCTTG	475	False	NA	NA	False	NA	NA	NA	88483832	88495720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88483911_88487186_88487342_88488280_88488380_88491089_88491183_88495230
58294	chr18	+	2118	1	NIC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	3808	3260	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTCCAACCCCCAAGGTT	NA	False	NA	NA	False	NA	NA	NA	32974182	32976300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_32974200_32976300
58296	chr3	-	2765	11	FSM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	135	5	5	-5	multi-exon	FALSE	canonical	3	276	junction_2	22.5302019520465	213	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATGTCAGTTTATTCTG	NA	False	NA	NA	False	NA	NA	NA	105594755	105585590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105591600_105591770_105593954_105594050_105594439
58297	chr17	+	864	6	NNC	ENSMUSG00000023967.10	novel	884	6	NA	NA	85	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	438.025296073183	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGTGTGGTCAGTGCTTA	NA	False	NA	NA	False	NA	NA	NA	46422006	46439833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436418_46436568_46436639_46439430
58298	chr16	-	2814	14	ISM	ENSMUSG00000041974.11	ENSMUST00000229846.2	6343	17	5	18373	5	-18373	5prime_fragment	FALSE	canonical	3	256	junction_6	25.3000923823652	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCACATATATAAATAAAAT	1999	False	NA	NA	False	NA	NA	NA	15964663	15729621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
58299	chr19	-	768	6	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-31	-637	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	467.251281432165	6	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCGAGTGTGCGCTTCCC	NA	False	NA	NA	False	NA	NA	NA	7181815	7176211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176503_7176818_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754
58300	chr10	-	2803	9	NNC	ENSMUSG00000055531.13	novel	2200	10	NA	NA	-4741	794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	227.560122550064	1	169	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATCCAGCCTTAATAA	NA	False	NA	NA	False	NA	NA	NA	117203879	117184149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117185365_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683
58301	chr4	+	1704	2	Antisense	novelGene_ENSMUSG00000042367.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	91	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATCATGAGAACCTGTCT	4275	False	NA	NA	False	NA	NA	NA	127219036	127220787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127219949_127219995
58302	chr17	-	1220	8	NNC	ENSMUSG00000024327.17	novel	1550	8	NA	NA	-6	-178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	214.290476137567	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGGTGCAGGTCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	34250662	34247947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797_34249913_34250375
58303	chr3	-	2086	7	Antisense	novelGene_ENSMUSG00000039988.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCATTGAAGATGAAGCTT	NA	False	NA	NA	False	NA	NA	NA	157712872	157694350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_157694420_157697315_157697450_157700288_157700394_157705291_157705374_157706710_157706810_157709345_157709445_157711374
58304	chr4	+	2171	14	NIC	ENSMUSG00000073791.14	novel	2121	14	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	4.74933816628712	41	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATGTGACTGTCTTGTTA	2024	False	NA	NA	False	NA	NA	NA	99717685	99769981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99717792_99719626_99719818_99731496_99731709_99732648_99732736_99735289_99735486_99735908_99736028_99746056_99746199_99754598_99754709_99757733_99757892_99758840_99758975_99761882_99762032_99766776_99766987_99768120_99768229_99769732
58305	chr8	+	1674	13	NIC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	2	0	combination_of_known_splicesites	TRUE	canonical	3	11	junction_5	71.7291878448996	40	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8827	False	NA	NA	False	NA	NA	NA	70592362	70620138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
58306	chr14	-	2769	3	FSM	ENSMUSG00000097589.10	ENSMUST00000180917.9	3544	3	39	736	4	-736	multi-exon	FALSE	canonical	2	7	junction_2	6	24	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAATGACCCAACATGAAC	NA	False	NA	NA	False	NA	NA	NA	61886232	61870533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_61873041_61880808_61880905_61886066
58307	chr9	+	2922	1	NIC	ENSMUSG00000037808.14	novel	3702	10	NA	NA	6699	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACAATAAAATATGCCGAA	3452	False	NA	NA	False	NA	NA	NA	13754871	13757793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_13754900_13757800
58309	chr6	-	2098	10	NNC	ENSMUSG00000006906.11	novel	2364	10	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	11.6024688730725	76	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGAGTGATTTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	83549440	83520198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540806_83540901_83541162_83541239_83547284_83547502_83549392
58311	chr11	-	610	1	Intergenic	novelGene_2210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAAGCCCTTCTGCATGT	NA	False	NA	NA	False	NA	NA	NA	6379890	6379280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_6379300_6379900
58312	chr11	+	802	8	ISM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	179	1965	179	-1374	5prime_fragment	FALSE	canonical	3	585	junction_7	62.1236423495557	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGCTACCCTGGATACA	1409	False	NA	NA	False	NA	NA	NA	101010942	101015280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248
58313	chr19	-	1901	16	ISM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	4002	2538	-1455	-2	3prime_fragment	FALSE	canonical	3	368	junction_1	49.7805852382901	168	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCTTGGTTGTGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	5434729	5430088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645
58314	chr5	+	229	2	ISM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	9208	47847	-1660	-2867	internal_fragment	FALSE	canonical	3	233	junction_1	0	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCCGTGGGGGAAGA	7288	False	NA	NA	False	NA	NA	NA	135225325	135227136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135225443_135227024
58315	chr2	+	1858	8	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-2120	970	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	1087.12934100853	1	113	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCGCCCCGACTCTGCC	NA	False	NA	NA	False	NA	NA	NA	162914544	162925589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162914864_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
58316	chr6	+	1829	3	ISM	ENSMUSG00000060477.15	ENSMUST00000113024.3	1887	10	16985	-1213	-3982	2	3prime_fragment	FALSE	canonical	3	24	junction_1	1	101	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTGTCTTATAATTTTG	3010	False	NA	NA	False	NA	NA	NA	113663723	113671972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_113663920_113667743_113668033_113670628
58318	chr1	-	1970	12	NIC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	70	-8	intron_retention	FALSE	canonical	3	42	junction_9	30.0522960165736	1	63	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTTGGTTTGCTCTTTA	5326	False	NA	NA	False	NA	NA	NA	171108623	171104572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
58320	chr5	+	1819	15	NNC	ENSMUSG00000029095.18	novel	660	8	NA	NA	28130	-19	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	29.4101884331513	17	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTAAAACAAAACCAAG	NA	False	NA	NA	False	NA	NA	NA	35943524	36015511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35943629_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35989029_35989087_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169
58321	chr7	+	2522	4	FSM	ENSMUSG00000055305.16	ENSMUST00000108438.10	3508	4	-11	997	-11	-30	multi-exon	TRUE	canonical	3	7	junction_2	2.44948974278318	39	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAAAGAATTAAACGT	NA	False	NA	NA	False	NA	NA	NA	23969833	23976222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_23970107_23971037_23971096_23972672_23972800_23974158
58323	chr8	+	3357	2	Genic_Genomic	ENSMUSG00000052446.18	novel	2689	4	NA	NA	10326	-865	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCACACCTAATCCTTC	NA	False	NA	NA	False	NA	NA	NA	72717616	72721032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_72718589_72718647
58324	chr19	-	1274	8	NIC	ENSMUSG00000024792.10	novel	1287	8	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	201.730978669866	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6671	False	NA	NA	False	NA	NA	NA	6134742	6130791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
58325	chr2	+	1620	15	FSM	ENSMUSG00000038572.8	ENSMUST00000045959.8	1637	15	17	0	17	0	multi-exon	FALSE	canonical	3	25	junction_6	7.50951777032701	113	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGTCTGAGTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	154065678	154082822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_154065814_154066857_154067075_154069010_154069116_154069982_154070115_154070773_154070859_154070950_154071015_154071386_154071473_154072092_154072276_154074753_154074808_154075108_154075259_154076410_154076479_154076607_154076654_154078677_154078742_154080747_154080828_154082671
58326	chr1	+	1471	6	NIC	ENSMUSG00000026520.9	novel	1580	7	NA	NA	0	-15	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	439.306089190669	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATTTATTTTTGAGTTC	16	False	NA	NA	False	NA	NA	NA	180731857	180735637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734354_180734519_180735041
58327	chr1	-	2605	17	FSM	ENSMUSG00000026565.19	ENSMUST00000160260.9	13022	17	49	10368	0	-34	multi-exon	FALSE	canonical	2	8	junction_3	5.36153837531729	58	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGATTGCTTCATGGAT	9694	False	NA	NA	False	NA	NA	NA	165830198	165703090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165710615_165710688_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
58328	chr1	-	195	1	Antisense	novelGene_ENSMUSG00000058603.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCACGACCCCTTTGCCAT	9823	False	NA	NA	False	NA	NA	NA	127966686	127966491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_127966500_127966700
58329	chr11	-	1197	10	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	35	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	424.351007749219	2	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGAGTTTGAGTGCAG	NA	False	NA	NA	False	NA	NA	NA	119190880	119179196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119183677_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
58332	chr6	+	1227	8	ISM	ENSMUSG00000038538.18	ENSMUST00000160583.8	14644	17	27608	29501	-1245	-1592	internal_fragment	FALSE	canonical	3	39	junction_7	4.16986271980755	6	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGACATGTGCTTTGCTG	4133	False	NA	NA	False	NA	NA	NA	38438492	38460197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_38438548_38439897_38440002_38440488_38440979_38447086_38447158_38455998_38456129_38458738_38458858_38459437_38459552_38460053
58333	chr14	+	1682	7	FSM	ENSMUSG00000033589.5	ENSMUST00000226563.2	1444	7	81	-319	-22	-13	multi-exon	FALSE	canonical	3	251	junction_2	32.9313258497471	176	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCTCTCCTAATTTGT	6545	False	NA	NA	False	NA	NA	NA	70782771	70786360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_70783179_70783916_70783990_70784369_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
58334	chr3	+	1475	11	Antisense	novelGene_ENSMUSG00000104528.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACCACGGCACGAGAATT	NA	False	NA	NA	False	NA	NA	NA	157599901	157630554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157600467_157602882_157602980_157611855_157611945_157612959_157613110_157614535_157614609_157616512_157616578_157619236_157619369_157624062_157624172_157625652_157625748_157626589_157626651_157630515
58335	chr1	-	968	5	NNC	ENSMUSG00000026234.13	novel	3072	12	NA	NA	-13	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2618.56076881939	21	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287099	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278334_86284396_86284464_86284678_86285175_86285828_86285946_86286927
58336	chr6	+	1788	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	39	4	39	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1222	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCTTGACAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	136785280	136787068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_136785300_136787100
58337	chr4	-	3053	1	Genic_Genomic	ENSMUSG00000037295.8	novel	NA	NA	NA	NA	5696	195	mono-exon	FALSE	NA	NA	NA	NA	NA	4	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGTGAGAGCCTCCATG	NA	False	NA	NA	False	NA	NA	NA	134471722	134468669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_134468700_134471700
58338	chr11	-	922	3	Intergenic	novelGene_2430	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	50	460	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGGCCATGGTGGCATT	4720	False	NA	NA	False	NA	NA	NA	83458289	83454495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_83455094_83457579_83457647_83458032
58339	chr2	+	1864	1	Antisense	novelGene_ENSMUSG00000032046.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGTGTGCCAAGTCTGTT	7421	False	NA	NA	False	NA	NA	NA	150674824	150676688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_150674800_150676700
58340	chr9	+	1269	9	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	19547	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	441.402310823131	1	54	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGAGTGGCTTTTC	1866	False	NA	NA	False	NA	NA	NA	45301286	45307453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280_45306877_45306965_45307108_45307229
58342	chr7	+	1088	6	NNC	ENSMUSG00000030842.13	novel	1119	5	NA	NA	-26	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	427.432988900015	72	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGGTTCAACCTGCTCT	7075	False	NA	NA	False	NA	NA	NA	101555158	101561098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101559984_101560014_101560479
58344	chr4	+	1119	7	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-40	3413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.716529359663	251	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586443	146627265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146611174_146611250_146616526_146616611_146619877_146620005_146626770
58345	chr13	+	2135	21	Fusion	ENSMUSG00000114388.2_ENSMUSG00000038651.16	novel	2641	29	NA	NA	-10108	-381	multi-exon	FALSE	canonical	0	0	junction_3	12.6509881037016	1	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGTCAACTGTGGAGGA	NA	False	NA	NA	False	NA	NA	NA	41292163	41332125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_41292189_41295183_41295277_41295380_41295442_41296923_41297070_41299501_41299596_41300030_41300129_41302269_41302328_41302410_41302490_41303953_41304003_41306165_41306311_41306906_41306957_41308994_41309122_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327290_41327389_41327673_41327774_41327873_41327933_41330358_41330421_41331657
58346	chr19	-	1555	11	NIC	ENSMUSG00000024824.8	novel	2081	11	NA	NA	-40	-496	combination_of_known_junctions	FALSE	canonical	3	7	junction_9	128.010155847105	1	41	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTAGCTTCCTCAGT	5932	False	NA	NA	False	NA	NA	NA	4251701	4245714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4250985_4251327_4251399_4251481
58347	chr5	-	1603	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-4	-11	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	109.421133127929	252	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTATTTGTACACATGGAT	5319	False	NA	NA	False	NA	NA	NA	143314961	143302262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314920
58348	chr4	-	2818	12	FSM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	102	0	-52	0	multi-exon	FALSE	canonical	3	48	junction_9	6.79693659727954	58	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	-41	True	NA	NA	False	NA	NA	NA	44072676	44036825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072361
58349	chr8	-	1374	6	NNC	ENSMUSG00000040459.12	novel	970	5	NA	NA	38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	429.516472326732	241	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTAAGCAATTTTTAT	5293	False	NA	NA	False	NA	NA	NA	8740483	8716575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_8717417_8731383_8731468_8733747_8733974_8739976_8740100_8740245_8740295_8740432
58351	chr13	+	2950	1	Intergenic	novelGene_1465	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATGGATTAAAGTTATT	NA	False	NA	NA	False	NA	NA	NA	69784265	69787215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_69784300_69787200
58353	chr6	-	3356	8	NNC	ENSMUSG00000035357.18	novel	1808	8	NA	NA	61905	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	8.39095723176481	18	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGACCTGCTCTGACATG	NA	False	NA	NA	False	NA	NA	NA	101270066	101126580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101269876
58354	chr9	+	1534	14	NNC	ENSMUSG00000032497.20	novel	3191	14	NA	NA	59	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	83.8204618365063	83	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGATTTGGATTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	110947261	111053288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110947303_110948702_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
58355	chr5	+	1527	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	67	11	12	-11	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	2	91	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTGCAGCCTTCTT	4613	False	NA	NA	False	NA	NA	NA	29941004	29972090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
58356	chr7	+	2554	3	FSM	ENSMUSG00000109814.2	ENSMUST00000211504.2	662	3	-33	-1859	-33	-7	multi-exon	FALSE	canonical	2	5	junction_2	0.5	35	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAAGTTGCTTTTGGTT	1703	False	NA	NA	False	NA	NA	NA	122630604	122667521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_122630774_122660895_122661022_122665262
58357	chr11	-	2102	6	NNC	ENSMUSG00000020427.12	novel	2421	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	76.8203098145276	110	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTTTGTCTGTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	7163910	7156085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_7157507_7158368_7158509_7159458_7159579_7160018_7160246_7163384_7163489_7163820
58359	chrM	+	662	2	Genic_Genomic	ENSMUSG00000064351.1_ENSMUSG00000064357.1	novel	681	1	NA	NA	-1072	-51	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTACGTATTCACCCTCCT	484	False	NA	NA	False	NA	NA	NA	6854	8556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_6862_7901
58360	chr7	-	4256	24	NNC	ENSMUSG00000032776.10	novel	5802	23	NA	NA	-17	837	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	3.17421082581634	2	123	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAACTCCACAGCACACCC	NA	False	NA	NA	False	NA	NA	NA	71956373	71729323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_71730606_71732834_71732933_71739918_71740029_71752891_71753002_71771445_71771488_71776885_71777009_71810887_71811008_71812945_71813021_71814357_71814460_71833552_71833656_71835510_71835614_71850093_71850188_71852036_71852224_71861342_71861474_71863691_71863857_71873768_71873805_71877727_71877840_71878219_71878297_71879075_71879219_71895208_71895318_71896855_71896919_71908846_71909380_71937432_71937616_71956218
58362	chr9	+	1854	4	NNC	ENSMUSG00000097439.7	novel	2077	3	NA	NA	4328	674	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTAGATGAGGCGGCC	4267	False	NA	NA	False	NA	NA	NA	21141026	21145016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21142164_21142544_21142722_21142991_21143199_21144683
58364	chr4	-	1308	10	NNC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	-13	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	968.408545558697	3	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTCATTGATTGGGGG	8830	False	NA	NA	False	NA	NA	NA	43031469	43028018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_43028294_43028937_43029054_43029261_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
58365	chr18	+	1195	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	12	195	12	-188	multi-exon	FALSE	canonical	3	1641	junction_2	78	2389	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTCTGTCTTATGTCT	NA	False	NA	NA	False	NA	NA	NA	77017724	77029113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
58366	chr1	+	1705	12	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	3	0	intron_retention	FALSE	canonical	1	2	junction_10	93.909838948002	1	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	NA	False	NA	NA	NA	75412614	75419817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75419087_75419257_75419544
58367	chr12	+	1154	10	NNC	ENSMUSG00000035142.19	novel	2987	11	NA	NA	-1	-1797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	102.471435345312	2	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGTGTGCTGGCTGCT	NA	False	NA	NA	False	NA	NA	NA	52144518	52357730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227999_52228091_52317818_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
58372	chr17	-	1441	2	Antisense	novelGene_ENSMUSG00000000708.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACAAAGTGAGTTCCAGG	NA	False	NA	NA	False	NA	NA	NA	53920257	53918774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_53919823_53919864
58374	chr15	+	1961	7	NNC	ENSMUSG00000022394.15	novel	4645	16	NA	NA	10	2	intron_retention	FALSE	canonical	0	0	junction_1	248.334899323921	1	94	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTGAAGAAAACAATGTGAT	NA	False	NA	NA	False	NA	NA	NA	81548166	81572502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81548226_81568146_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
58375	chr17	-	1946	1	Genic_Genomic	ENSMUSG00000024251.11	novel	NA	NA	NA	NA	37850	11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATTGGCAGGCATGCTGT	NA	False	NA	NA	False	NA	NA	NA	84499438	84497492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_84497500_84499400
58377	chr13	-	2138	1	ISM	ENSMUSG00000050876.10	ENSMUST00000224982.2	5325	5	8023	364	3874	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	9	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAGAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	59850121	59847983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_59848000_59850100
58378	chr18	+	4827	1	Intergenic	novelGene_4552	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	109	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTGCAAAAGCTCCTAATT	NA	False	NA	NA	False	NA	NA	NA	62877998	62882825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_62878000_62882800
58379	chr5	-	2142	11	NNC	ENSMUSG00000066900.12	novel	2425	12	NA	NA	279	1	intron_retention	FALSE	canonical	0	0	junction_7	190.705637043062	161	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTTGCCACGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	117253784	117229748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243393_117246408_117246485_117247822_117247879_117250874_117250945_117253736
58380	chr11	-	1854	9	NNC	ENSMUSG00000009073.17	novel	4720	16	NA	NA	-65	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	170.775254354956	6	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAAGCTGCTATAGTCTT	8951	False	NA	NA	False	NA	NA	NA	4799430	4715862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4716521_4744411_4744489_4749873_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4770367_4770494_4798871
58381	chr16	-	2933	6	NNC	ENSMUSG00000075033.5	novel	6436	6	NA	NA	-101	-3244	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	2.13541565040626	28	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAGTATTTCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	55715749	55663559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55665090_55669974_55670182_55680668_55680743_55686158_55686914_55710944_55711213_55715650
58382	chrX	+	413	3	ISM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	44556	729	1909	-729	3prime_fragment	FALSE	canonical	3	812	junction_1	40	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150843979	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150844042_150844288_150844400_150844721
58383	chr9	+	921	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	97	17	97	-17	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	777	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCGCTGACCTAAGCC	NA	False	NA	NA	False	NA	NA	NA	120321653	120324379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
58384	chr7	-	1401	8	ISM	ENSMUSG00000058239.14	ENSMUST00000162228.9	960	10	523	-583	5	577	3prime_fragment	FALSE	canonical	0	0	junction_6	47.043618491952	233	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTGTCTGTGTGTCCAT	9333	False	NA	NA	False	NA	NA	NA	30655659	30645421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655305_30655426_30655573
58386	chr14	-	941	8	ISM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	3	18959	3	268	5prime_fragment	FALSE	canonical	3	46	junction_3	2.77010277566647	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAGAAGTAAATGTATTT	6948	False	NA	NA	False	NA	NA	NA	31362918	31348114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
58387	chr7	-	1400	5	ISM	ENSMUSG00000030652.12	ENSMUST00000098090.10	1215	7	-18	15409	-5	-6	5prime_fragment	FALSE	canonical	3	921	junction_2	46.3916748997059	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGATTCCTTGGTTTTCT	6662	False	NA	NA	False	NA	NA	NA	118132542	118124290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
58389	chr5	+	2422	8	FSM	ENSMUSG00000029152.14	ENSMUST00000202250.4	800	8	6	-1628	6	-957	multi-exon	FALSE	canonical	3	159	junction_1	366.22843323003	42	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTACCCACAAGTGAGAAA	NA	False	NA	NA	False	NA	NA	NA	73450155	73465751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
58393	chr9	-	472	2	ISM	ENSMUSG00000056167.9	ENSMUST00000216785.2	1723	10	20943	14	20722	-14	3prime_fragment	FALSE	canonical	3	448	junction_1	0	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAAAACCTGGG	NA	False	NA	NA	False	NA	NA	NA	114448309	114446609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_114447063_114448290
58394	chr4	+	1720	8	NNC	ENSMUSG00000059810.19	novel	3888	16	NA	NA	1506	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.4998914456894	2	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCAAAGACCCCTCTCCC	124	False	NA	NA	False	NA	NA	NA	62543451	62607973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62544331_62544725_62544769_62549360_62549558_62552682_62552767_62558953_62559066_62564920_62564965_62570950_62571074_62607735
58395	chr5	+	1620	3	Antisense	novelGene_ENSMUSG00000109771.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	74	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGAGGATAACTATGACA	NA	False	NA	NA	False	NA	NA	NA	110225407	110227162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_110225930_110225981_110226057_110226139
58396	chr18	-	1854	7	NNC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	8	278	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	167.606433846278	572	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAGTACATTGAGATAC	6734	False	NA	NA	False	NA	NA	NA	74340881	74329271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335918_74337334_74337460_74339859_74339956_74340664
58397	chr2	-	1672	6	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	50	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91.1951753109779	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGAAATAATAATGCAGA	NA	False	NA	NA	False	NA	NA	NA	106804692	106792885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_106792968_106794541_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
58398	chr3	-	3902	19	NNC	ENSMUSG00000027778.16	novel	7616	19	NA	NA	-30	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	11.5797023352433	2	153	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCACAATAAAAAGGTTAA	985	False	NA	NA	False	NA	NA	NA	68901900	68799861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822314_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898303_68901840
58399	chr19	-	2692	11	FSM	ENSMUSG00000041488.17	ENSMUST00000069285.6	2810	11	114	4	-17	-4	multi-exon	FALSE	canonical	3	392	junction_5	58.7316779940774	151	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCTCTGGGGCCATCTC	7251	False	NA	NA	False	NA	NA	NA	11796192	11754852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_11756538_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
58400	chr6	-	1408	8	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	4170	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1421.82515644864	2	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACCTAAATAGCGCTAT	9332	False	NA	NA	False	NA	NA	NA	88864727	88860474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88860554_88860609_88861093_88861357_88861514_88861674_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701
58401	chr14	+	1352	1	Intergenic	novelGene_531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCAAAGCTTTTATGACA	NA	False	NA	NA	False	NA	NA	NA	26356336	26357688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_26356300_26357700
58402	chr13	+	1496	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	37	-6	37	6	multi-exon	FALSE	canonical	3	237	junction_2	13.4257215820976	280	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTCGCTTGTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	55862499	55874046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
58403	chr15	+	1401	1	NIC	ENSMUSG00000033287.18	novel	1632	7	NA	NA	3900	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	57	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGCTTGGCCTGGCTGCC	5028	False	NA	NA	False	NA	NA	NA	78322081	78323482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78322100_78323500
58404	chr10	+	1578	7	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	70	14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1429.30585328061	1	79	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCTGTCCTTTTAAGT	973	False	NA	NA	False	NA	NA	NA	127894949	127912861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910164_127911935
58405	chr7	-	1967	3	FSM	ENSMUSG00000038459.11	ENSMUST00000117085.2	2238	3	264	7	41	-7	multi-exon	FALSE	canonical	3	1379	junction_1	80.5	300	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAACGCGTGGGCTTAT	NA	False	NA	NA	False	NA	NA	NA	83800837	83758570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_83760010_83763458_83763639_83800489
58406	chr5	-	1971	8	FSM	ENSMUSG00000029513.15	ENSMUST00000111999.8	2026	8	48	7	-1	-7	multi-exon	FALSE	canonical	3	151	junction_7	27.0313499024932	262	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGAGTAACTTTTGACT	NA	False	NA	NA	False	NA	NA	NA	116162519	116151655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149_116162319_116162423
58407	chrX	-	1027	6	NNC	ENSMUSG00000031167.17	novel	1225	7	NA	NA	615	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	440.236481904896	5	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAATCAATACTGATAAT	7194	False	NA	NA	False	NA	NA	NA	8011303	8008607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_8009195_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010896_8011223
58409	chr10	-	2039	14	NNC	ENSMUSG00000042570.15	novel	2676	14	NA	NA	26	-121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	95.3128762481661	1	40	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAGTGGCCAGGGCCACA	NA	False	NA	NA	False	NA	NA	NA	79390885	79376875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79377034_79377347_79377769_79378238_79378316_79378430_79378556_79380353_79380449_79380545_79380605_79380878_79381031_79383488_79383559_79384187_79384277_79384625_79384744_79385017_79385144_79385370_79385688_79386149_79386241_79390744
58410	chr9	-	2047	20	Antisense	novelGene_ENSMUSG00000035284.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	4	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGGCGGGAGAGGGAGG	NA	False	NA	NA	False	NA	NA	NA	67803505	67747699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_67747807_67759770_67759814_67760971_67761020_67766070_67766173_67768069_67768166_67778455_67778568_67781136_67781196_67783507_67783567_67785376_67785459_67786358_67786418_67788611_67788738_67790732_67790841_67791852_67792023_67793535_67793600_67796965_67797094_67797574_67797670_67800360_67800506_67801239_67801431_67802609_67802725_67803367
58411	chr10	+	1303	7	FSM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	108	0	108	0	multi-exon	FALSE	canonical	3	2772	junction_6	274.064925397858	1066	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTGTGTCCCTGCTTCT	165	False	NA	NA	False	NA	NA	NA	81395435	81402196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
58412	chr17	-	2996	1	FSM	ENSMUSG00000024218.14	ENSMUST00000233306.2	1496	1	-1502	2	5	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAGGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28128211	28125215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_28125200_28128200
58413	chr17	-	1153	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	23	7	23	-7	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	2	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGTGACTGGCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	24388412	24382846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
58414	chr8	+	1136	5	NNC	ENSMUSG00000031641.15	novel	4309	5	NA	NA	0	95	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.7851611098058	652	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTTGCTAAGAGTATTT	2566	False	NA	NA	False	NA	NA	NA	61940767	61956518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_61941062_61942973_61943095_61944578_61944713_61948101_61948237_61956066
58415	chr11	+	4734	17	Antisense	novelGene_ENSMUSG00000052373.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	147	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCGGAGCCGCGCGGGAG	NA	False	NA	NA	False	NA	NA	NA	101890542	101917719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_101891555_101892848_101892972_101895814_101895923_101896170_101896267_101899181_101899262_101899344_101899513_101900473_101902610_101904139_101904334_101907448_101907526_101909445_101909538_101911299_101911378_101914150_101914290_101914526_101914611_101915904_101915981_101916206_101916324_101916555_101916685_101917694
58416	chr5	-	1419	2	NNC	ENSMUSG00000040429.7	novel	2413	2	NA	NA	127	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	493	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATTTTGTATGTATT	NA	False	NA	NA	False	NA	NA	NA	3943769	3940581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_3941898_3943666
58417	chr2	+	1800	2	NNC	ENSMUSG00000086202.2	novel	424	2	NA	NA	3	-2	intron_retention	TRUE	non_canonical	0	0	junction_1	0	23	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTCTTTATATCA	NA	False	NA	NA	False	NA	NA	NA	45586619	45588457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_45587278_45587315
58419	chr9	-	1484	12	NNC	ENSMUSG00000032047.6	novel	3405	12	NA	NA	-20	116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	48.8003183840041	1	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATTTTTTTGTAAAC	NA	False	NA	NA	False	NA	NA	NA	53521650	53493670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505767_53505993_53506090_53506582_53506701_53509384_53509433_53521512
58420	chr14	-	1066	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	45	1203	-38	121	multi-exon	FALSE	canonical	3	244	junction_3	15.9661099415815	1366	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACTGAGTAGAGTTCCAA	NA	False	NA	NA	False	NA	NA	NA	21899000	21897125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
58421	chr17	-	3736	4	FSM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	22	7093	-15	663	multi-exon	FALSE	canonical	3	18	junction_3	1.24721912892465	16	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGGGATAGTCCTATT	NA	False	NA	NA	False	NA	NA	NA	33007239	32991562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32994983_32996130_32996192_32996374_32996502_33007111
58422	chr18	+	1228	5	NNC	ENSMUSG00000042705.10	novel	494	5	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	591.729826441088	12	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTATTTAAACTCAAGC	NA	False	NA	NA	False	NA	NA	NA	47091927	47221049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47091996_47093482_47093574_47123602_47123657_47219318_47219379_47220094
58423	chr2	-	1446	3	NIC	ENSMUSG00000027341.11	novel	1612	4	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	306.5	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAGTGTGTGTGTTGTTA	4908	False	NA	NA	False	NA	NA	NA	132089689	132081416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132082547_132087875_132087995_132089492
58426	chr11	-	971	1	NIC	ENSMUSG00000018921.12	novel	562	4	NA	NA	0	-6430	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTCAGTTCCTACAAGCTA	NA	False	NA	NA	False	NA	NA	NA	70300857	70299886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70299900_70300900
58427	chr11	-	906	1	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	1202	-658	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCACTGGGTCCTTAGCA	7114	False	NA	NA	False	NA	NA	NA	82797311	82796405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_82796400_82797300
58428	chr15	-	1605	10	NNC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	-1	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	656.964361924988	1	87	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGATGCAGATACCACTG	NA	False	NA	NA	False	NA	NA	NA	75952754	75942058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942470_75942589_75942834_75943030_75943167_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949549_75952694
58429	chr8	+	1354	8	NIC	ENSMUSG00000019478.18	novel	1419	8	NA	NA	29	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	159.435483721121	589	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTACACTGTCCTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	124532752	124562028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124557009_124557127_124559541_124559638_124560753_124560887_124561432
58430	chr7	-	1187	10	NNC	ENSMUSG00000109324.3	novel	2147	10	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1118.3310757829	8	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCACTTCTCGCCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	44635760	44626183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44626408_44626927_44627050_44627550_44627683_44628112_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
58432	chr15	-	1740	1	NIC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	-5	-3060	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGCTTAGTGAGCTAGC	NA	False	NA	NA	False	NA	NA	NA	82128879	82127139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_82127100_82128900
58433	chr9	+	2447	6	FSM	ENSMUSG00000032517.17	ENSMUST00000174193.8	2609	6	0	162	0	-162	multi-exon	FALSE	canonical	2	7	junction_4	5.38144961882948	29	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTATCTGGAGATTGCT	NA	False	NA	NA	False	NA	NA	NA	119978807	120010388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216_120002442_120008392_120008472_120008590
58434	chr14	+	2838	1	FSM	ENSMUSG00000022113.7	ENSMUST00000022708.7	3075	1	238	-1	237	1	mono-exon	FALSE	NA	NA	NA	NA	NA	20	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTGACATGCTTATATT	NA	False	NA	NA	False	NA	NA	NA	106343869	106346707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_106343900_106346700
58435	chr2	+	2164	2	NIC	ENSMUSG00000068264.12	novel	1521	3	NA	NA	8	0	intron_retention	FALSE	canonical	3	39	junction_1	0	2	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	NA	False	NA	NA	NA	131052297	131055434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_131053394_131054366
58436	chr4	-	1258	8	NIC	ENSMUSG00000028692.15	novel	1420	9	NA	NA	72	0	combination_of_known_splicesites	FALSE	canonical	2	71	junction_7	565.609333698929	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	NA	False	NA	NA	NA	116508805	116493706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116508535
58437	chr11	+	1073	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_3	302.9380134615	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	96680076	96698975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693529_96693649_96697441_96697591_96698628
58438	chr12	+	3006	2	ISM	ENSMUSG00000007411.17	ENSMUST00000221753.2	2394	18	75925	-201	-3683	122	3prime_fragment	FALSE	canonical	3	329	junction_1	0	5	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTCTTGTTTCCATTG	NA	False	NA	NA	False	NA	NA	NA	111617409	111622250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_111619869_111621703
58439	chr8	-	472	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212796.2	679	4	-16	223	0	-158	multi-exon	FALSE	canonical	3	16397	junction_3	7152.95244403782	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGAGTGACCCCGAGTGT	NA	False	NA	NA	False	NA	NA	NA	71350056	71348245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71348354_71348559_71348690_71348776_71348957_71350002
58440	chr16	-	2414	6	ISM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	40	20517	-18	3956	5prime_fragment	FALSE	canonical	3	32	junction_2	5.5281099844341	13	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAATTCCCAATACTCA	NA	False	NA	NA	False	NA	NA	NA	55755178	55740767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
58441	chr7	+	1328	7	Intergenic	novelGene_3007	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCACCAAATCCTACCGAG	NA	False	NA	NA	False	NA	NA	NA	100197917	100232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214497_100223643_100223720_100232194
58443	chr8	-	2658	2	Intergenic	novelGene_1615	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	126	22	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATACTGCCCCCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	34347333	34344484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_34346410_34346600
58444	chr10	-	3477	15	Antisense	novelGene_ENSMUSG00000039031.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAATGAAGTTCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	26794536	26648539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_26648691_26721925_26722124_26725869_26726107_26730869_26730933_26736551_26736729_26745916_26746081_26748666_26748761_26753152_26753229_26754884_26755047_26756683_26756765_26763774_26763983_26765725_26765869_26788602_26788726_26792386_26792449_26792998
58445	chr19	-	2054	4	NNC	ENSMUSG00000025050.9	novel	2159	10	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	279.000995617499	211	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGGTGTGTTGACATA	NA	False	NA	NA	False	NA	NA	NA	47039327	47022055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_47023125_47025676_47025764_47028482_47029208_47039154
58446	chr5	+	1066	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-22	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7825.51059924456	2	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAAACTCCGGTCTGG	NA	False	NA	NA	False	NA	NA	NA	115697573	115701565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697944_115698799_115699042_115699157_115699305_115699391_115699578_115700484_115700626_115701338
58448	chr10	-	2240	10	NIC	ENSMUSG00000074802.12	novel	6748	11	NA	NA	-3	-1339	intron_retention	FALSE	canonical	3	41	junction_2	8.94427190999916	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCCAAAGCTACCTAAAG	NA	False	NA	NA	False	NA	NA	NA	89279819	89249659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89270224_89272364_89272472_89279716
58450	chr1	+	660	1	NIC	ENSMUSG00000097113.8	novel	413	3	NA	NA	5114	649	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAAAATGTGCCATACTAC	NA	False	NA	NA	False	NA	NA	NA	136616480	136617140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_136616500_136617100
58451	chr1	+	826	1	NIC	ENSMUSG00000097113.8	novel	413	3	NA	NA	6329	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAATATGTTAACAG	NA	False	NA	NA	False	NA	NA	NA	136617695	136618521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_136617700_136618500
58452	chr11	-	792	3	Antisense	novelGene_ENSMUSG00000017776.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGCCGCGGGCCTTCCCC	NA	False	NA	NA	False	NA	NA	NA	75583702	75570129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75570185_75570433_75570490_75583021
58454	chr15	+	859	1	Intergenic	novelGene_3367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAACAGAAGAGGAAAAT	8234	False	NA	NA	False	NA	NA	NA	98445651	98446510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_98445700_98446500
58458	chr1	-	2582	3	FSM	ENSMUSG00000045658.17	ENSMUST00000168574.9	2664	3	82	0	48	0	multi-exon	FALSE	canonical	3	48	junction_1	0	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTTTATTTATTTTTTT	522	False	NA	NA	False	NA	NA	NA	84262284	84014016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_84016229_84136952_84137100_84262061
58459	chr14	-	2361	1	ISM	ENSMUSG00000034731.12	ENSMUST00000226342.3	15257	30	171050	616	67548	-616	mono-exon	FALSE	NA	NA	NA	NA	NA	23	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCATTGGAAGGTGTGA	NA	False	NA	NA	False	NA	NA	NA	78799166	78796805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_78796800_78799200
58460	chr13	-	2121	16	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	12	17206	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	162.366854855157	1	103	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGATTTTTAAAATGAT	7248	False	NA	NA	False	NA	NA	NA	113063920	113031709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113032158_113035298_113035425_113038006_113038095_113039927_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
58462	chr5	-	1660	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	-25	0	-22	0	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	502	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	NA	False	NA	NA	NA	41865522	41782318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
58463	chr9	+	2696	1	ISM	ENSMUSG00000048429.11	ENSMUST00000062125.11	3170	2	525	28	525	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	70	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTATGAAATAGTCTTATT	5036	False	NA	NA	False	NA	NA	NA	21504542	21507238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21504500_21507200
58464	chr1	-	4887	13	FSM	ENSMUSG00000040693.8	ENSMUST00000071985.6	4908	13	20	1	20	-1	multi-exon	FALSE	canonical	0	0	junction_9	6.53781733880318	32	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGTTTTATTACTCTTT	NA	False	NA	NA	False	NA	NA	NA	96799876	96743995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_96746833_96748907_96749046_96751421_96751487_96756515_96756701_96759710_96759865_96764604_96764801_96765178_96765324_96766891_96767011_96768854_96768977_96770178_96770276_96772200_96772381_96795449_96795714_96799491
58465	chr15	+	1596	5	ISM	ENSMUSG00000059895.14	ENSMUST00000053232.8	3260	6	2787	1540	2787	0	3prime_fragment	FALSE	canonical	3	97	junction_1	9.24662100445346	93	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGTGTGAAGAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	73623009	73629075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
58467	chr3	+	929	6	NIC	ENSMUSG00000027500.11	novel	2073	5	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_5	694.848357557244	289	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	8574561	8626666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325_8625397_8626398
58468	chr11	-	1943	5	NNC	ENSMUSG00000004394.13	novel	2003	5	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	215.48259790526	883	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	5363	False	NA	NA	False	NA	NA	NA	6224845	6220368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6221801_6223740_6223888_6224142_6224234_6224397_6224499_6224673
58469	chr17	-	288	1	Intergenic	novelGene_160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	36555024	36554736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_36554700_36555000
58470	chr9	-	2607	1	ISM	ENSMUSG00000045414.8	ENSMUST00000113028.2	3950	3	17609	2	17609	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	82	48	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGGCTACTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	94402525	94399918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_94399900_94402500
58471	chr6	-	2513	17	ISM	ENSMUSG00000051586.18	ENSMUST00000077159.8	2875	18	39419	17	-11411	-16	3prime_fragment	FALSE	canonical	3	40	junction_1	13.4348834661861	30	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGACACCTGTGTCATTC	8320	False	NA	NA	False	NA	NA	NA	121019132	120984217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_120984391_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926_121004075_121006607_121006705_121007957_121008085_121010658_121010775_121010990_121011249_121013433_121013535_121014404_121014561_121014970_121015073_121015447_121015565_121017342_121017551_121018956
58472	chr12	-	1128	1	FSM	ENSMUSG00000071414.6	ENSMUST00000166583.4	948	1	192	-372	192	372	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATCTGAGGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	13505779	13504651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_13504700_13505800
58473	chr17	-	821	3	NNC	ENSMUSG00000024121.14	novel	1183	3	NA	NA	35	87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	708	1	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCGTCTGTGGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	24388400	24383039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24383583_24383799_24383857_24388179
58474	chr7	+	2691	7	FSM	ENSMUSG00000062861.9	ENSMUST00000081022.9	4447	7	30	1726	30	1060	multi-exon	FALSE	canonical	3	6	junction_3	4.21966296705739	20	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTATATTCACTGGTTA	2989	False	NA	NA	False	NA	NA	NA	6386323	6398188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6393560_6395180_6395296_6396365
58475	chr7	-	2271	6	NNC	ENSMUSG00000030499.10	novel	2409	6	NA	NA	1359	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	14.9050327071094	50	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGGCTCCGTCCTGTG	9719	False	NA	NA	False	NA	NA	NA	34350903	34338439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_34339875_34341232_34341539_34344262_34344408_34349380_34349557_34350171_34350265_34350787
58476	chr2	+	1125	5	NIC	ENSMUSG00000027430.13	novel	1350	6	NA	NA	89	-45	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	128.50753868937	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAATGAACTACTTTATT	NA	False	NA	NA	False	NA	NA	NA	144441905	144610633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_144442012_144459111_144459348_144477677_144477785_144588820_144588994_144610130
58478	chr10	-	2429	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	92	33	49	-33	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	2	72	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGTTGCCAGATACA	NA	False	NA	NA	False	NA	NA	NA	82599886	82584567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
58479	chr18	+	1083	7	NNC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	162.057003002716	1899	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	67774682	67787234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67774806_67777378_67777551_67779062_67779122_67781161_67781317_67781842_67782017_67786222_67786344_67786955
58480	chr10	-	857	7	Antisense	novelGene_ENSMUSG00000020088.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGCAGAACGCAAGGATGA	NA	False	NA	NA	False	NA	NA	NA	61527226	61516478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_61516675_61520656_61520731_61520842_61520965_61521332_61521397_61522151_61522258_61525552_61525683_61527061
58483	chr9	+	2046	10	NIC	ENSMUSG00000023473.14	novel	1418	11	NA	NA	2	334	intron_retention	FALSE	canonical	1	2	junction_4	2.97313070227992	3	65	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGACCCACAGCACCCACC	NA	False	NA	NA	False	NA	NA	NA	108720435	108726267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108720500_108720742_108720918_108721124_108721238_108721661_108721742_108722240_108722368_108722900_108723018_108723112_108723262_108723518_108724066_108724743_108724945_108725794
58485	chr10	+	796	1	Intergenic	novelGene_3499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	83187060	83187856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_83187100_83187900
58486	chr14	+	1871	7	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	7	16977	7	-16970	5prime_fragment	FALSE	canonical	3	648	junction_1	46.0350108311296	8	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACACAGCAGAGAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	122419122	122622669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609
58487	chr8	+	852	6	NNC	ENSMUSG00000005161.16	novel	1500	6	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1532.90905144434	6	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85696322	85700946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85697991_85698190_85698322_85700628
58489	chr7	+	2282	6	NIC	ENSMUSG00000003184.16	novel	1641	7	NA	NA	-3	-9	intron_retention	FALSE	canonical	3	134	junction_1	18.4499322491981	29	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCATCACATCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44647100	44651804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44651213_44651587
58490	chr11	-	1637	8	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	292	-27	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	94.5053718373852	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAACAAAAACCTGGATT	NA	False	NA	NA	False	NA	NA	NA	77784630	77771467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77772081_77772326_77772361_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
58491	chrX	+	923	3	NNC	ENSMUSG00000051257.4	novel	1178	3	NA	NA	175	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1296	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTACAGTTGTTTCACGT	NA	False	NA	NA	False	NA	NA	NA	138234606	138238912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_138235088_138237575_138237800_138238694
58492	chr6	+	2093	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	97	464	2	-464	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	1	107	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGGATCATGTGGTC	NA	False	NA	NA	False	NA	NA	NA	71520877	71558099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
58493	chr2	-	479	5	NNC	ENSMUSG00000018770.10	novel	714	5	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1845.53750639211	17	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGCTGTGATTTGTA	NA	False	NA	NA	False	NA	NA	NA	73741618	73738792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739030_73739686_73739722_73740207_73740286_73741298_73741405_73741595
58494	chr9	-	1443	11	Antisense	novelGene_ENSMUSG00000032586.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	55	5	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAGTGAACCGGAAGGAAT	NA	False	NA	NA	False	NA	NA	NA	107848729	107828160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_107828370_107833058_107833116_107833538_107833627_107836012_107836053_107836635_107836766_107838176_107838262_107845919_107845949_107847204_107847250_107847665_107847817_107847905_107847958_107848172
58495	chr7	+	1793	3	ISM	ENSMUSG00000030638.14	ENSMUST00000177895.8	1486	9	107605	11	12209	-11	3prime_fragment	FALSE	canonical	3	343	junction_1	15	6	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCATAAAAGACTGGTTA	NA	False	NA	NA	False	NA	NA	NA	81932302	81956616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_81933367_81934228_81934339_81955997
58496	chr1	-	1461	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	67	570	-3	-570	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTTTTACTTAAAAGATG	7363	False	NA	NA	False	NA	NA	NA	160040378	160030506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
58497	chr10	-	1456	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	165	0	58	0	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	128	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	NA	False	NA	NA	NA	81186093	81181884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
58498	chr14	-	1768	8	NNC	ENSMUSG00000034194.19	novel	1726	8	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	89.7106459680232	13	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTGCGTCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	69944928	69934755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942544_69943328_69943995_69944134_69944502_69944631_69944845
58499	chr17	-	2246	6	NNC	ENSMUSG00000024218.14	novel	3457	6	NA	NA	34	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	76.0168402395153	301	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTTGGCTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	28128182	28120122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28120764_28121501_28121599_28122074_28122163_28124154_28124385_28126474_28127226_28127743
58500	chr14	+	2294	6	NIC	ENSMUSG00000022109.7	novel	1328	7	NA	NA	0	-3	intron_retention	FALSE	canonical	3	317	junction_5	16.1170716943246	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTAATTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	73747464	73755982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
58501	chr12	+	2322	12	NNC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	62.858886956591	1	63	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCACCTCTTTGGCTCT	1856	False	NA	NA	False	NA	NA	NA	84363898	84390491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372568_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
58502	chr16	-	1247	9	NIC	ENSMUSG00000033918.17	novel	1362	10	NA	NA	1	-9	combination_of_known_junctions	FALSE	canonical	3	48	junction_6	575.510208423795	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAAACAGTGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	20121094	20098578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20116342_20116484_20116880_20117077_20120958
58507	chr11	-	1281	3	FSM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	16	18	0	-18	multi-exon	FALSE	canonical	3	30	junction_1	6	215	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATTTTACAATTATAATT	NA	False	NA	NA	False	NA	NA	NA	30936334	30926724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_30927747_30929564_30929601_30936111
58509	chr19	-	1530	6	NNC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	-19	222	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	278.629072424254	2	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCACGTTTTGAGGTAAT	7421	False	NA	NA	False	NA	NA	NA	44396167	44386209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44386553_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
58512	chr17	-	1985	4	ISM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	8	21719	8	-21719	5prime_fragment	FALSE	canonical	3	301	junction_3	30.6920185064456	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAAAAGACTTGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	87332826	87326402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_87327946_87329286_87329379_87331092_87331342_87332725
58514	chr5	-	2579	15	ISM	ENSMUSG00000029410.12	ENSMUST00000031359.9	2274	16	2492	-295	2492	0	3prime_fragment	FALSE	canonical	0	0	junction_4	5.68429630559456	42	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTACCTGTGTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	92398526	92374537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_92375087_92376505_92376594_92378261_92378426_92379578_92379686_92382032_92382176_92383590_92383777_92386603_92387003_92392462_92392613_92392687_92392725_92393241_92393409_92394593_92394641_92395616_92395732_92396956_92397133_92398147_92398206_92398333
58515	chr2	-	1779	6	NIC	ENSMUSG00000027286.17	novel	1962	6	NA	NA	-18	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	69.0582362937253	302	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGTCTGGAAGTAATG	NA	False	NA	NA	False	NA	NA	NA	120439814	120434720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439754
58519	chr8	-	2033	16	FSM	ENSMUSG00000031478.17	ENSMUST00000033865.16	2021	16	-18	6	5	-3	multi-exon	FALSE	canonical	3	19	junction_15	6.34350061086148	91	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAACCGTGTGTGCTGGT	NA	False	NA	NA	False	NA	NA	NA	22656446	22618304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622210_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
58520	chr19	-	2100	9	NIC	ENSMUSG00000025221.17	novel	2395	10	NA	NA	-5	-3	combination_of_known_junctions	TRUE	canonical	3	6	junction_8	6.92820323027551	33	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGCTGTCTCTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	45785488	45780787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45784717_45784772_45785353
58521	chr16	-	1542	4	ISM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	23	5045	-12	-5033	5prime_fragment	FALSE	canonical	3	1206	junction_3	34.2928563989645	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGACTGCAGTCATGGTTT	8663	False	NA	NA	False	NA	NA	NA	33787385	33780196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_33780723_33781938_33782611_33784141_33784296_33787195
58522	chr5	-	1465	1	Intergenic	novelGene_750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTATACCAGGCTGGCC	NA	False	NA	NA	False	NA	NA	NA	93328495	93327030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_93327000_93328500
58523	chr15	-	1229	5	NNC	ENSMUSG00000061360.9	novel	471	4	NA	NA	-15	147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	552.549997737761	9	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAACTTTGAACGTCTACT	NA	False	NA	NA	False	NA	NA	NA	81755881	81749522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81750094_81751368_81751748_81754532_81754700_81755366_81755391_81755793
58525	chr11	+	951	5	ISM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	29852	2807	29613	-2807	3prime_fragment	FALSE	canonical	3	969	junction_3	19.2532464794902	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATATTCTAAATATCT	NA	False	NA	NA	False	NA	NA	NA	102949023	102956931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
58526	chrX	+	902	3	NNC	ENSMUSG00000051257.4	novel	1178	3	NA	NA	181	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1494.5	9	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGTTGTTTCACGTTAA	NA	False	NA	NA	False	NA	NA	NA	138234612	138238915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_138235157_138237570_138237728_138238714
58527	chr10	+	1098	7	Antisense	novelGene_ENSMUSG00000019942.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACGGACCCTAAAATGAGGG	2384	False	NA	NA	False	NA	NA	NA	69174137	69185980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_69174427_69176310_69176453_69176544_69176711_69178373_69178541_69180890_69181008_69181899_69182058_69185921
58528	chr6	+	1776	2	FSM	ENSMUSG00000051124.7	ENSMUST00000054050.5	1384	2	22	-414	22	-1	multi-exon	FALSE	canonical	3	46	junction_1	0	147	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATTGTGGCATATATGT	1311	False	NA	NA	False	NA	NA	NA	48653084	48656047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48653189_48654375
58529	chr10	+	1408	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_5	1660.53243477571	20	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	128657775	128713498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128678855_128679347_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
58530	chr12	-	1113	7	NNC	ENSMUSG00000021124.14	novel	1490	6	NA	NA	0	71	at_least_one_novel_splicesite	FALSE	canonical	2	35	junction_5	321.69641485931	55	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGTATAACATTAAT	NA	False	NA	NA	False	NA	NA	NA	79219222	79203031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218391_79218475_79218993
58533	chr9	+	4091	1	ISM	ENSMUSG00000034584.4	ENSMUST00000051014.2	5957	6	70666	1088	31147	-1088	mono-exon	FALSE	NA	NA	NA	NA	NA	14	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTGAAAGCGAATCTGG	NA	False	NA	NA	False	NA	NA	NA	53283635	53287726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_53283600_53287700
58535	chr3	-	1300	1	Intergenic	novelGene_3159	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGTGGAGCCAAGTCATC	NA	False	NA	NA	False	NA	NA	NA	96022218	96020918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_96020900_96022200
58536	chr8	-	1984	1	Intergenic	novelGene_1781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCCAAGCCCAAACCACAA	NA	False	NA	NA	False	NA	NA	NA	123754264	123752280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_123752300_123754300
58537	chr9	-	3310	2	FSM	ENSMUSG00000032413.13	ENSMUST00000188853.2	1072	2	765	-3003	765	-2	multi-exon	FALSE	canonical	3	30	junction_1	0	31	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGTTCTTTGTGAGACC	NA	False	NA	NA	False	NA	NA	NA	96426467	96421354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96424529_96426331
58538	chr8	+	3061	2	Intergenic	novelGene_1629	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTCCTACTTCACCTCT	NA	False	NA	NA	False	NA	NA	NA	43594863	43597966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43595046_43595087
58539	chr1	-	2495	14	ISM	ENSMUSG00000026437.12	ENSMUST00000112362.3	1705	17	17503	-1105	-5189	927	3prime_fragment	FALSE	canonical	3	137	junction_4	14.6105255080473	86	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCAGTGAGCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	132049840	132041396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_132042709_132043202_132043281_132043599_132043691_132044184_132044228_132044333_132044440_132044621_132044720_132045219_132045341_132045487_132045612_132046258_132046322_132046587_132046683_132046837_132046953_132047705_132047763_132049185_132049312_132049774
58541	chr17	+	2297	2	ISM	ENSMUSG00000034382.15	ENSMUST00000150819.3	4866	5	30607	508	30607	-14	3prime_fragment	FALSE	canonical	3	11	junction_1	0	26	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTAATATGCATCCTGG	9140	False	NA	NA	False	NA	NA	NA	47778336	47781055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_47779779_47780200
58542	chr2	-	1678	4	FSM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	-70	12	-70	-12	multi-exon	FALSE	canonical	3	367	junction_1	31.0268700752536	806	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATCCAGAGGTATTGT	NA	False	NA	NA	False	NA	NA	NA	163261518	163247753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163261331
58543	chr10	-	3885	8	ISM	ENSMUSG00000020099.9	ENSMUST00000218316.2	5713	16	45941	215	45941	-215	3prime_fragment	FALSE	canonical	0	0	junction_3	0.925820099772551	13	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGAGACAGCACCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	60610479	60598603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_60601153_60602758_60602941_60604102_60604268_60604886_60605037_60607956_60608191_60608267_60608437_60609522_60609611_60610131
58545	chr16	-	2170	5	FSM	ENSMUSG00000022914.18	ENSMUST00000113827.4	2382	5	212	0	114	0	multi-exon	TRUE	canonical	3	425	junction_4	11.1214882097676	84	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTAAGTATTCTATAAAATC	NA	False	NA	NA	False	NA	NA	NA	95883514	95867867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
58546	chr5	-	3133	6	NIC	ENSMUSG00000015882.19	novel	4884	7	NA	NA	2	-1637	combination_of_known_splicesites	FALSE	canonical	3	9	junction_4	27.5782523014059	1	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCAGGTTCTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	46014821	45889369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_45891828_45893072_45893167_45904397_45904650_45932733_45932864_45952634_45952701_46014688
58547	chr19	-	712	1	Genic_Genomic	ENSMUSG00000117739.2	novel	NA	NA	NA	NA	6252	434	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACGCCTTTAATGCCAG	5380	False	NA	NA	False	NA	NA	NA	3763321	3762609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_3762600_3763300
58549	chr11	-	1245	3	Antisense	novelGene_ENSMUSG00000078249.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGACTCTTGTAAATCTAAG	5980	False	NA	NA	False	NA	NA	NA	120655211	120653620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120653929_120654110_120654358_120654521
58550	chr7	-	2005	1	Antisense	novelGene_ENSMUSG00000033429.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGCTGGCACATACCTT	NA	False	NA	NA	False	NA	NA	NA	64061770	64059765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_64059800_64061800
58552	chr8	-	930	7	FSM	ENSMUSG00000031516.12	ENSMUST00000033913.11	1249	7	322	-3	3	0	multi-exon	FALSE	canonical	3	293	junction_6	39.9485780584101	1538	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGCCTCAATTTCCATT	NA	False	NA	NA	False	NA	NA	NA	34575628	34557573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
58553	chr17	+	1773	10	NNC	ENSMUSG00000023827.9	novel	1915	9	NA	NA	15	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	82.474238402061	4	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTCTCTGGGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	12338230	12438514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871_12438165_12438228
58554	chr5	+	608	1	NIC	ENSMUSG00000047635.7	novel	1637	2	NA	NA	130	-11287	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGTGCTTTCAAGCCT	5528	False	NA	NA	False	NA	NA	NA	124466290	124466898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_124466300_124466900
58555	chr13	-	1054	7	NIC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	3	20	junction_5	68.711959172573	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTATAGTGCTTTGTACA	NA	False	NA	NA	False	NA	NA	NA	49806263	49617501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49803596_49803776_49806058
58556	chr1	-	2333	5	NNC	ENSMUSG00000046836.14	novel	614	7	NA	NA	986	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	57.5646375824603	4	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTACAGTAAGGGGGAGAG	NA	False	NA	NA	False	NA	NA	NA	183076430	183067691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_183067763_183069304_183069401_183073470_183073568_183074038_183076018_183076340
58557	chr2	+	2381	7	FSM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	13	727	0	683	multi-exon	FALSE	canonical	3	90	junction_3	10.077477638554	74	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCACGTCTGCATCTTTT	6670	False	NA	NA	False	NA	NA	NA	25262345	25267498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
58558	chr19	+	1974	11	FSM	ENSMUSG00000024776.19	ENSMUST00000054956.15	2024	11	10	40	10	-38	multi-exon	FALSE	canonical	3	23	junction_1	15.5630973780928	84	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGATGCCATCGGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	34169638	34217693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_34170032_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
58560	chr5	-	1340	8	FSM	ENSMUSG00000001844.11	ENSMUST00000001900.9	1364	8	18	6	-9	2	multi-exon	FALSE	canonical	3	167	junction_7	40.248209492435	452	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGATATTTGTTTTCTCA	5287	False	NA	NA	False	NA	NA	NA	143314993	143302249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
58561	chr13	+	1886	9	NNC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	323.735134793862	55	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTATATATTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	85337564	85361019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_85338474_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
58562	chr11	-	2323	16	NNC	ENSMUSG00000020340.17	novel	3074	22	NA	NA	12965	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	39.5590135816802	1	81	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGTGTGTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	46148531	46086893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_46087295_46089817_46089966_46091472_46091712_46098213_46098307_46099114_46099188_46112162_46112294_46113436_46113528_46114888_46115033_46130830_46130919_46133113_46133314_46138385_46138506_46140556_46140666_46143430_46143508_46144774_46144871_46145336_46145494_46148375
58563	chr14	+	2956	12	FSM	ENSMUSG00000034327.18	ENSMUST00000150768.8	1302	12	37	-1691	14	-1	multi-exon	FALSE	canonical	3	52	junction_9	22.4881970879051	75	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCTGTTTCTGCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	67953747	67979609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
58564	chr12	+	4517	13	NIC	ENSMUSG00000037686.7	novel	2722	15	NA	NA	-24	-6	intron_retention	TRUE	canonical	3	16	junction_8	3.76662979332984	24	116	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGCTCTTTGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	112073278	112093987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_112073408_112078625_112080940_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
58566	chr14	+	1869	7	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-14067	-348	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	5.02217305777312	13	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATCTCTAACTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	40986694	41010424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40986778_40986925_40987404_40998200_40998303_41000785_41000918_41001646_41001810_41002809_41002942_41009645
58567	chr1	+	1130	9	NIC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_5	1013.94981846983	3	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
58568	chr3	+	2258	10	NIC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	0	-305	combination_of_known_junctions	FALSE	canonical	3	29	junction_5	45.5520323840878	3	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCACTTTAAAAGCCACCA	NA	False	NA	NA	False	NA	NA	NA	57643495	57742235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703717_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
58569	chr11	-	733	5	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9032.9801387748	89	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6392	False	NA	NA	False	NA	NA	NA	69812091	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807778_69808447_69808555_69808742_69808848_69809976_69810163_69811988
58570	chr15	+	2478	12	NNC	ENSMUSG00000003352.15	novel	2714	9	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	17.6934409101133	56	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCCTCCGGTGTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	98529689	98542406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98529813_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98539046_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
58571	chr1	-	902	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-1	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2482.96572782541	4	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174627	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173387_16173559_16173733_16173909_16174588
58572	chr11	-	738	2	NNC	ENSMUSG00000078812.11	novel	1409	6	NA	NA	637	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAGCCCCCAACTCAGTT	9990	False	NA	NA	False	NA	NA	NA	69808493	69807550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808372
58573	chr1	+	1789	10	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	11	-404	intron_retention	FALSE	canonical	1	2	junction_9	89.2716757922995	4	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCCGAATGACCCCCGA	NA	False	NA	NA	False	NA	NA	NA	75412638	75419172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75419087
58575	chr4	+	3827	16	Antisense	novelGene_ENSMUSG00000040728.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	62	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGAAGGAGGGAAGAGCA	9693	False	NA	NA	False	NA	NA	NA	11331932	11386641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_11333474_11338721_11338832_11344111_11344262_11353294_11353463_11357458_11357663_11359740_11359959_11360955_11361255_11365002_11365045_11365141_11365276_11365372_11365487_11366908_11366963_11367084_11367186_11379293_11379406_11384348_11384463_11385646_11385773_11386301
58576	chr6	-	2099	8	NNC	ENSMUSG00000030216.13	novel	2739	12	NA	NA	-2	238	at_least_one_novel_splicesite	FALSE	canonical	3	247	junction_7	530.315924324206	15	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGTGTGCACACTGTA	2920	False	NA	NA	False	NA	NA	NA	136805143	136796487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805019
58577	chr17	-	2577	18	FSM	ENSMUSG00000024371.15	ENSMUST00000025230.15	2641	18	62	2	-12	-1	multi-exon	TRUE	canonical	1	4	junction_13	3.65842630716852	48	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTGTCTGTCTTATGTC	NA	False	NA	NA	False	NA	NA	NA	35101014	35081582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35082008_35082154_35082205_35082320_35082451_35082599_35082692_35082838_35082916_35083020_35083187_35083283_35083402_35083487_35083583_35083704_35083846_35085493_35085584_35091342_35091484_35092437_35092577_35094863_35094998_35095129_35095232_35095309_35095487_35098857_35099044_35100547_35100773_35100925
58578	chr10	-	2402	11	NNC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	172.046970330779	1	135	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCCTCCAGGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	81332193	81322292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324351_81324471_81327060_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
58579	chr8	-	5181	21	FSM	ENSMUSG00000053626.6	ENSMUST00000066166.6	4767	21	358	-772	358	772	multi-exon	TRUE	canonical	0	0	junction_18	1.14017542509914	7	75	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAACAACTTTACTTTTC	NA	False	NA	NA	False	NA	NA	NA	64658669	64467192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_64469215_64470514_64470766_64478095_64478310_64491489_64491618_64494439_64494566_64500037_64500219_64504387_64504549_64506893_64507020_64509288_64509485_64523186_64523333_64524306_64524424_64527258_64527362_64538484_64538601_64546902_64547028_64551462_64551569_64554870_64555050_64570938_64571057_64571565_64571719_64574491_64574573_64577925_64578037_64658248
58581	chr2	-	1930	16	NNC	ENSMUSG00000027639.17	novel	2036	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	54.1957767932357	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	NA	False	NA	NA	NA	156977138	156941320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951385_156952480_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
58583	chr7	-	1712	2	NNC	ENSMUSG00000003873.12	novel	1100	5	NA	NA	-20	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTATGGTCCCTTGTCC	10015	False	NA	NA	False	NA	NA	NA	45116222	45111125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45112384_45115768
58584	chr2	-	1052	6	FSM	ENSMUSG00000017307.17	ENSMUST00000017451.7	1055	6	-2	5	-2	-5	multi-exon	FALSE	canonical	3	23	junction_1	116.717779279765	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGTAGCTGACCTTTAA	8164	False	NA	NA	False	NA	NA	NA	164646804	164634692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164634931_164637001_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
58585	chr7	+	2201	13	NNC	ENSMUSG00000038637.16	novel	2197	13	NA	NA	12	-18	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	7.90920701180312	50	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAATTATGAAGTTGTC	1330	False	NA	NA	False	NA	NA	NA	140775002	140789942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140775130_140775820_140775926_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
58586	chr12	+	2308	2	ISM	ENSMUSG00000056899.11	ENSMUST00000134965.8	977	6	601219	249346	557236	-249346	internal_fragment	FALSE	canonical	3	237	junction_1	0	8	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCACCCACGCCTACACAT	NA	False	NA	NA	False	NA	NA	NA	41675546	41752679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_41675613_41750437
58589	chr15	-	691	1	FSM	ENSMUSG00000115993.2	ENSMUST00000231103.2	490	1	356	-557	356	557	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGGGTCAAACATAATCT	NA	False	NA	NA	False	NA	NA	NA	93577174	93576483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_93576500_93577200
58590	chr5	-	2013	6	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	49	-1	intron_retention	FALSE	canonical	3	179	junction_5	23.7149741724506	24	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCCTGGTTTTGTATAGG	NA	False	NA	NA	False	NA	NA	NA	110255528	110251841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925
58591	chr4	-	2548	5	NIC	ENSMUSG00000051517.15	novel	1508	8	NA	NA	11	-10	intron_retention	FALSE	canonical	3	106	junction_3	12.0623380818148	2	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGTTTTTGCAAAAGCCT	9062	False	NA	NA	False	NA	NA	NA	43499684	43496157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43496721_43496820_43498030_43498585_43498705_43498895_43499338_43499469
58592	chr18	-	4021	1	Antisense	novelGene_ENSMUSG00000024576.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGCGAGAACACTAAGGCAA	1164	False	NA	NA	False	NA	NA	NA	61706456	61702435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61702400_61706500
58593	chrX	-	3650	3	Antisense	novelGene_ENSMUSG00000025261.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTCATGACAGTGTAGCA	NA	False	NA	NA	False	NA	NA	NA	150666874	150661273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_150661902_150663491_150663711_150664071
58594	chr4	+	1136	1	Intergenic	novelGene_1959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAACGAGAGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	128472470	128473606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_128472500_128473600
58595	chr4	-	2138	6	Antisense	novelGene_ENSMUSG00002076239.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGGGAGGGGCGAGGACAA	NA	False	NA	NA	False	NA	NA	NA	44909569	44756640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_44756692_44761847_44762479_44893530_44893569_44894913_44895042_44895818_44895990_44908450
58597	chr1	+	1495	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	17	-1028	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	595.509678995881	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCATCTGTGACTAACC	NA	False	NA	NA	False	NA	NA	NA	4928053	4967100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961025_4962149_4962293_4963639_4963787_4965156_4965229_4966578
58598	chrX	+	2769	15	Antisense	novelGene_ENSMUSG00000031434.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGACGCTCCTCCATCCC	NA	False	NA	NA	False	NA	NA	NA	138724597	138772414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_138725393_138735154_138735330_138736682_138736737_138737233_138737305_138738603_138738731_138741445_138741535_138750395_138750499_138752761_138752882_138755158_138755287_138755606_138755745_138758498_138758645_138759547_138759766_138765243_138765386_138771822_138771892_138772020
58600	chr1	+	2796	3	ISM	ENSMUSG00000036206.13	ENSMUST00000066279.11	4995	6	73524	1303	73486	-1303	3prime_fragment	FALSE	canonical	3	112	junction_2	11.5	1	120	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACCTTAGTAAAGGCAAAT	1178	False	NA	NA	False	NA	NA	NA	89071660	89081487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_89073629_89079921_89080111_89080848
58602	chr9	-	1574	13	NNC	ENSMUSG00000032376.13	novel	2797	14	NA	NA	20	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.0647955938539	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAACATTTCCATTTTCCA	NA	False	NA	NA	False	NA	NA	NA	66500262	66425662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_66425881_66427519_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
58604	chr3	-	2873	9	ISM	ENSMUSG00000027947.12	ENSMUST00000029559.7	3343	10	22691	260	22691	-260	3prime_fragment	FALSE	canonical	2	3	junction_6	4.02919036532155	36	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCTCTGCTTGTCCGCTC	NA	False	NA	NA	False	NA	NA	NA	89797778	89776890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89778694_89784115_89784216_89785150_89785221_89786155_89786203_89793208_89793351_89793848_89794016_89794328_89794514_89796493_89796618_89797543
58605	chr15	-	1802	1	Intergenic	novelGene_3213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTTAGAATACCCAAGAT	NA	False	NA	NA	False	NA	NA	NA	8798174	8796372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_8796400_8798200
58607	chr7	-	1472	3	NNC	ENSMUSG00000044709.7	novel	613	2	NA	NA	-3060	-11920	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCGCTCAGGTGAGTGAG	5465	False	NA	NA	False	NA	NA	NA	19314580	19311268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19311553_19311740_19311883_19313534
58608	chr6	+	2364	1	Antisense	novelGene_ENSMUSG00000108053.2_AS_novelGene_ENSMUSG00000005667.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGCCACGAAGCTATACCC	NA	False	NA	NA	False	NA	NA	NA	83292186	83294550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_83292200_83294600
58609	chr17	+	1184	6	FSM	ENSMUSG00000007041.10	ENSMUST00000007257.10	1466	6	249	33	249	-33	multi-exon	TRUE	canonical	3	1084	junction_1	70.1524055182714	4489	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAAAAAATCTAGTGTT	1925	False	NA	NA	False	NA	NA	NA	35269190	35277692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
58611	chr4	-	683	3	NIC	ENSMUSG00000028234.7	novel	3706	4	NA	NA	66	0	intron_retention	FALSE	canonical	3	8309	junction_2	3.5	42	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	-1	True	NA	NA	False	NA	NA	NA	3835599	3834472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_3834684_3834935_3835292_3835483
58614	chr15	-	2157	6	ISM	ENSMUSG00000018865.10	ENSMUST00000082365.6	2383	7	127	2703	-18	-1655	5prime_fragment	FALSE	canonical	3	68	junction_1	7.23878442834154	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTGTCTTGATTCCAAA	NA	False	NA	NA	False	NA	NA	NA	83989828	83963000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
58615	chr15	-	2156	16	NNC	ENSMUSG00000022466.7	novel	2271	17	NA	NA	2455	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	110.296247543705	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATCTATAAGGGTCGAT	NA	False	NA	NA	False	NA	NA	NA	97601251	97572986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598974_97599088_97601082
58616	chr15	+	3394	16	ISM	ENSMUSG00000022240.11	ENSMUST00000226119.2	4111	22	474085	-335	604	-33	3prime_fragment	FALSE	canonical	3	23	junction_10	10.715720538847	20	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAGGAAAAAAAAAAAAGG	235	False	NA	NA	False	NA	NA	NA	30647281	31028522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_30647471_30669557_30669753_30683360_30683617_30775244_30775378_30806831_30807046_30847373_30847558_30881268_30881387_30887239_30887426_30905805_30905980_30922000_30922152_30966901_30967113_30972938_30973024_31005094_31005222_31009178_31009311_31020846_31020921_31027557
58617	chr4	-	1123	7	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	460.049514243364	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGCTGGTGGGTTT	2614	False	NA	NA	False	NA	NA	NA	129229041	129203308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228420_129229006
58618	chr11	-	1500	8	FSM	ENSMUSG00000035557.10	ENSMUST00000080893.7	1551	8	0	51	0	-51	multi-exon	FALSE	canonical	3	34	junction_4	2.1946130708196	160	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAACTGTGGCCTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	100151855	100147093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100147323_100148145_100148172_100148258_100148480_100148568_100148695_100149234_100149397_100149998_100150156_100150520_100150604_100151359
58619	chr17	-	594	4	ISM	ENSMUSG00000024207.9	ENSMUST00000043062.5	2609	15	1462	19803	1462	-19803	internal_fragment	FALSE	canonical	2	2	junction_1	2.35702260395516	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAATGACCAACAGCTG	NA	False	NA	NA	False	NA	NA	NA	57179985	57169905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_57169992_57171459_57171549_57175225_57175456_57179796
58621	chr3	-	1106	6	NNC	ENSMUSG00000000563.18	novel	1604	8	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2152.82673710636	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACAGAATTTATAAGTT	NA	False	NA	NA	False	NA	NA	NA	105866591	105850023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_105850371_105851011_105851183_105858906_105859033_105861333_105861498_105863211_105863348_105866429
58622	chr19	+	1546	9	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46124	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	50.0248375809457	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGAGATCATGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	46807974	46866798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46808062_46808187_46808322_46842339_46842484_46845274_46845413_46847381_46847553_46856976_46857071_46860094_46860161_46865646_46865832_46866271
58624	chr2	-	1078	9	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1506.61847671366	2	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9594	False	NA	NA	False	NA	NA	NA	10085231	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073590_10085158
58626	chr11	-	2770	1	Intergenic	novelGene_2222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACTGTCAATACATAGA	NA	False	NA	NA	False	NA	NA	NA	12333022	12330252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_12330300_12333000
58627	chr5	-	1488	1	Antisense	novelGene_ENSMUSG00000029106.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTCTTCTTCAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	34789630	34788142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_34788100_34789600
58629	chr17	+	1711	13	ISM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	294	4526	161	369	intron_retention	FALSE	canonical	2	228	junction_10	34.6718746088078	2	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGCCTTGGGGGACTGG	NA	False	NA	NA	False	NA	NA	NA	34175079	34181483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040
58630	chr1	-	3453	1	NIC	ENSMUSG00000026656.16	novel	3544	8	NA	NA	-6173	-18	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	83	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTACCAGAACCTCAAAGAC	NA	False	NA	NA	False	NA	NA	NA	170795372	170791919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_170791900_170795400
58631	chr9	+	945	6	NNC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	6609	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1203.58414745293	2	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAGCAACTCTCAGGATT	NA	False	NA	NA	False	NA	NA	NA	64195497	64212067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64195530_64197624_64197732_64201358_64201415_64201604_64201669_64208323_64208531_64211588
58632	chr15	-	2274	8	FSM	ENSMUSG00000000552.11	ENSMUST00000168828.3	2298	8	20	4	20	-4	multi-exon	FALSE	canonical	3	18	junction_6	68.2405708519799	323	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCGCCAAGGACTCAGACT	6939	False	NA	NA	False	NA	NA	NA	103248500	103222325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103241491_103241629_103248473
58633	chr6	-	3109	12	NNC	ENSMUSG00000108034.2	novel	363	4	NA	NA	12015	1012	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	57	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGTCGTTTCTCGGAGA	NA	False	NA	NA	False	NA	NA	NA	125014799	124986123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124986208_124987342_124987403_125000640_125000711_125000993_125001233_125001466_125001515_125001707_125002044_125002808_125002903_125007759_125007985_125008632_125008816_125010201_125010276_125012669_125012835_125013268
58634	chr11	-	1724	12	NNC	ENSMUSG00000020745.16	novel	5803	11	NA	NA	23	-3617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	306.253689470102	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAAATTATTCTGGATGT	NA	False	NA	NA	False	NA	NA	NA	74615121	74568392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824_74614951_74615036
58635	chr5	+	1644	11	NNC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	28	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	235.34283503009	1	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAGATTGTAAACAATATG	NA	False	NA	NA	False	NA	NA	NA	64250320	64285503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265559_64285123
58637	chr14	+	1411	7	Antisense	novelGene_ENSMUSG00000021792.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCCTGCGCAGCTCAGC	NA	False	NA	NA	False	NA	NA	NA	40715691	40735770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_40716377_40716545_40716594_40719668_40719834_40720800_40720944_40724393_40724485_40725997_40726160_40735653
58638	chr3	+	1171	9	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	-70	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	852.476163523063	2	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTGAATCTCATTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	79500925	79510582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509753_79509793_79510337
58641	chr11	-	3291	1	Antisense	novelGene_ENSMUSG00000020430.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCAAAAAAGTAATTAAAGG	8652	False	NA	NA	False	NA	NA	NA	3918867	3915576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_3915600_3918900
58642	chr4	-	1641	11	NNC	ENSMUSG00000028800.16	novel	2038	14	NA	NA	222	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	572.1792463905	2	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAACAGCTCATTTCTA	NA	False	NA	NA	False	NA	NA	NA	129418113	129409923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418044
58643	chr2	+	2606	9	ISM	ENSMUSG00000038696.15	ENSMUST00000113126.3	3018	11	12239	10	-83	-9	3prime_fragment	FALSE	canonical	3	190	junction_3	18.9208879284245	1	134	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATACCCTCTTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	34334275	34514952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
58644	chr8	-	2604	14	FSM	ENSMUSG00000005465.10	ENSMUST00000005601.9	2664	14	30	30	10	28	multi-exon	FALSE	canonical	3	16	junction_12	6.10848667572056	52	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATTAATAAATAAATC	5289	False	NA	98	True	NA	NA	NA	84769188	84756952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84757822_84757941_84758051_84758147_84758239_84758645_84758772_84760579_84760739_84760820_84760923_84762713_84762903_84762991_84763176_84765924_84765999_84766106_84766264_84767302_84767461_84767560_84767719_84768715_84768834_84769078
58645	chr4	+	3363	11	ISM	ENSMUSG00000038024.18	ENSMUST00000142837.3	5870	31	51697	-1522	48109	-26	3prime_fragment	FALSE	canonical	3	53	junction_8	6.70522184569608	63	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGTTGAATAAAAAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	86744188	86768814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_86744318_86746204_86746386_86747156_86747267_86747727_86747904_86754616_86754800_86755617_86755814_86757868_86758115_86759221_86759340_86763063_86763215_86766194_86766260_86767006
58646	chr6	+	1101	8	FSM	ENSMUSG00000040112.10	ENSMUST00000036111.10	4162	8	-32	3093	-32	-1	multi-exon	FALSE	canonical	3	595	junction_4	51.0230040155958	1170	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTATTGTCTTACGTC	NA	False	NA	NA	False	NA	NA	NA	146944229	146972396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
58647	chr5	+	817	4	FSM	ENSMUSG00000019054.14	ENSMUST00000111097.8	601	4	-134	-82	-3	-1	multi-exon	FALSE	canonical	3	58	junction_1	234.963827003222	410	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTCTGTGTGTGAGCGA	4048	False	NA	NA	False	NA	NA	NA	136982125	136995085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136982445_136993946_136994024_136994418_136994525_136994770
58648	chr2	-	1329	7	NNC	ENSMUSG00000026922.14	novel	1273	6	NA	NA	40	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	301.47083883299	9	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGTGGGTAGAGTTCTTT	9927	False	NA	NA	False	NA	NA	NA	26493898	26483072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26483267_26483356_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26493660
58651	chr6	-	1211	6	NNC	ENSMUSG00000023456.17	novel	1552	6	NA	NA	0	-128	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	742.905539082863	1	56	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCTTTGTGGGTTGTC	NA	False	NA	NA	False	NA	NA	NA	124791121	124787682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789461_124789752_124789877_124790970
58652	chr2	+	2373	2	Antisense	novelGene_ENSMUSG00000026672.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCACCTGAGCCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	5033494	5036063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_5033911_5034106
58654	chr6	-	1543	9	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-34	-55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	814.273286050206	1	76	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATATTGACACATGACA	NA	False	NA	NA	False	NA	NA	NA	124942204	124935833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936204_124936260_124936601_124936761_124936914_124937074_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
58658	chr17	-	1401	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	-17	4	-17	-4	multi-exon	FALSE	canonical	3	296	junction_2	292	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTGCAATGAAGAGCAT	NA	False	NA	NA	False	NA	NA	NA	71160558	71151209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71152268_71153166_71153394_71160442
58660	chr8	+	2536	8	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	2	6	junction_2	98.8546655346078	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTATGCGTGTGGGTGT	NA	False	NA	NA	False	NA	NA	NA	27535054	27546158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_27535164_27535425_27535462_27535827_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544055_27545085
58662	chr11	+	2110	4	NNC	ENSMUSG00000085860.2	novel	612	4	NA	NA	16	1112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	53.7959106252511	82	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTCCGAGGGTACTCT	NA	False	NA	NA	False	NA	NA	NA	97489352	97510969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97489494_97505749_97505855_97506394_97506552_97509262
58665	chr14	+	2440	1	NIC	ENSMUSG00000037628.11	novel	917	8	NA	NA	-4	-5828	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATCTCAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	46998038	47000478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_46998000_47000500
58667	chr16	-	2801	6	NIC	ENSMUSG00000050908.13	novel	3315	7	NA	NA	143	-8	intron_retention	FALSE	canonical	1	2	junction_5	3.84707681233427	7	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAAACTTGTATTTCTC	NA	False	NA	NA	False	NA	NA	NA	10264865	10238428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_10240750_10242062_10242123_10243623_10243753_10244864_10244994_10245246_10245337_10264793
58668	chr13	+	2183	17	Fusion	ENSMUSG00000114388.2_ENSMUSG00000038651.16	novel	2641	29	NA	NA	-2763	-8	multi-exon	FALSE	canonical	3	4	junction_1	10.3198837202751	19	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGGGATCAGTTAGTGTG	NA	False	NA	NA	False	NA	NA	NA	41299508	41332498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_41299596_41300030_41300150_41302269_41302328_41302410_41302490_41303953_41304003_41306165_41306311_41306906_41306957_41308994_41309122_41310909_41310994_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327673_41327774_41327873_41327933_41330358_41330421_41331657
58669	chr13	+	909	1	Intergenic	novelGene_1445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTACTTTCTGCCAAAAC	NA	False	NA	NA	False	NA	NA	NA	66705644	66706553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66705600_66706600
58670	chr16	+	2537	3	Intergenic	novelGene_3591	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0.5	32	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAATTAACCTCTAAGTAT	NA	False	NA	NA	False	NA	NA	NA	10286372	10292029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_10286474_10289437_10289520_10289675
58671	chr9	-	2725	24	NNC	ENSMUSG00000040936.16	novel	4200	35	NA	NA	3	31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	9.74863666489815	9	24	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAATACATTCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	121106233	120985885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_120986096_120986231_120986354_120989335_120989470_120997249_120997378_121017283_121017394_121033776_121033874_121037222_121037331_121073431_121073511_121077990_121078038_121079927_121080110_121081718_121081780_121084182_121084288_121085363_121085461_121086144_121086215_121086365_121086488_121087794_121087891_121089074_121089151_121090973_121091058_121091633_121091736_121092694_121092858_121095273_121095414_121095579_121095680_121101938_121102123_121106125
58672	chr8	-	2216	13	NNC	ENSMUSG00000015023.8	novel	2547	12	NA	NA	28	-425	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_12	135.624148742848	4	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCACCCCACCCCACCC	7744	False	NA	NA	False	NA	NA	NA	111724374	111702052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111721780_111721933_111724298
58673	chr9	+	830	1	Intergenic	novelGene_990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTGTCTGATACAACAGA	NA	False	NA	NA	False	NA	NA	NA	13741385	13742215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_13741400_13742200
58674	chr9	-	1706	1	ISM	ENSMUSG00000003410.9	ENSMUST00000003501.9	5014	7	34380	920	8744	536	mono-exon	FALSE	NA	NA	NA	NA	NA	7	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTATTTATACAAAGGG	NA	False	NA	NA	False	NA	NA	NA	21928926	21927220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21927200_21928900
58675	chr12	-	1001	2	NNC	ENSMUSG00000021266.17	novel	1824	11	NA	NA	14057	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	8719	False	NA	-48	True	NA	NA	NA	108827150	108825959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108826694_108826883
58676	chr7	+	3330	5	FSM	ENSMUSG00000056592.15	ENSMUST00000107972.8	3495	5	133	32	133	-32	multi-exon	FALSE	canonical	1	5	junction_1	0.5	8	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACATGAAATAAATCTTT	NA	False	NA	NA	False	NA	NA	NA	43211812	43224853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43211846_43214037_43214268_43216691_43216819_43217068_43217168_43222012
58677	chr12	-	2793	6	ISM	ENSMUSG00000021062.16	ENSMUST00000122419.8	856	7	976	-2158	976	-4	3prime_fragment	FALSE	canonical	3	60	junction_1	3.70944739819828	33	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGGTGTGTGGGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	76851276	76844737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_76847176_76847339_76847406_76848665_76848756_76849841_76849920_76850341_76850403_76851216
58679	chr9	+	1008	2	Genic_Genomic	ENSMUSG00000049932.4	novel	1384	1	NA	NA	-3	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	0	113	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAAGTGGTTTAATG	5250	False	NA	NA	False	NA	NA	NA	44245987	44247365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_44246347_44246716
58681	chr11	+	1170	3	NNC	ENSMUSG00000034285.16	novel	656	4	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	613	3	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGTGGTGTTGTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	4823986	4844201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4824104_4833367_4833484_4843264
58682	chr5	+	1016	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	374	215	218	-215	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	2	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCGGTCTGGATTTAT	NA	False	NA	NA	False	NA	NA	NA	115697899	115701571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
58683	chr7	-	2859	4	NNC	ENSMUSG00000074093.5	novel	3053	4	NA	NA	64	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.6188571424762	2	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCAAGAGTTAGATGCAC	NA	False	NA	NA	False	NA	NA	NA	51655532	51646917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_51649526_51653093_51653205_51653640_51653734_51655485
58684	chr17	-	946	4	FSM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	374	823	14	70	multi-exon	FALSE	canonical	3	1955	junction_2	187.919013289118	6169	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGATGCTGACTCAAGTGG	3418	False	NA	NA	False	NA	NA	NA	71297511	71280950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71297467
58685	chr19	+	1374	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	-297	3	-297	-3	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	1018	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCAGCCTTTCTGTGTGTG	6579	False	NA	NA	False	NA	NA	NA	4146884	4149014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
58686	chr9	-	1594	6	NNC	ENSMUSG00000049073.8	novel	1879	2	NA	NA	-109757	-80	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	26.33172990899	114	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATTTATGTATTGCTA	NA	False	NA	NA	False	NA	NA	NA	40151237	40038299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_40039350_40063206_40063277_40071322_40071459_40108832_40108959_40121021_40121120_40151123
58687	chr11	+	1920	7	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	29	-3942	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2714.50695338951	1	118	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGACTGCTAAAACTCAC	NA	False	NA	NA	False	NA	NA	NA	55360572	55391722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55390411
58688	chr4	-	996	11	NNC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	-6	-14	at_least_one_novel_splicesite	FALSE	canonical	2	43	junction_7	428.58488074126	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6403	False	NA	NA	False	NA	NA	NA	129494415	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489120_129490666_129490733_129492747_129492836_129494201_129494295_129494386
58689	chr11	+	3590	13	FSM	ENSMUSG00000042331.14	ENSMUST00000202179.2	6676	13	-27	3113	11	-64	multi-exon	FALSE	canonical	0	0	junction_10	9.09326673973661	11	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATAAAGCAGCACCCCA	NA	False	NA	NA	False	NA	NA	NA	61967895	62110726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_61968063_62008525_62010109_62019025_62019234_62022655_62022730_62023101_62023281_62037131_62037278_62038393_62038495_62042695_62042778_62047312_62047467_62052633_62052737_62096209_62096327_62102469_62102530_62110110
58690	chr17	-	1274	3	FSM	ENSMUSG00000085492.8	ENSMUST00000143828.2	781	3	-493	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	30	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	71905741	71895551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71895980_71897482_71897518_71904930
58692	chr17	-	906	5	NNC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	-16	69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	924.059116074291	27	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGATGCTGACTCAAGTG	3388	False	NA	NA	False	NA	NA	NA	71297541	71280951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71281492_71282453_71282500_71282568_71282616_71284042_71284242_71297467
58693	chr9	+	2545	7	NNC	ENSMUSG00000032517.17	novel	2609	6	NA	NA	13	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6.95221787153807	33	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATAAAACTCCAAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	119978820	120010538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216_120002442_120008392_120008472_120008590_120010110_120010148
58694	chr5	-	1509	3	Intergenic	novelGene_826	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAGAAAAAGAATGATTGA	NA	False	NA	NA	False	NA	NA	NA	114837736	114834715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_114835476_114836174_114836730_114837542
58695	chr9	+	1027	9	NNC	ENSMUSG00000032301.14	novel	1165	9	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	613.916817960707	29	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTATGGTGAAAGGATAC	NA	False	NA	NA	False	NA	NA	NA	54858098	54865312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862183_54863580_54863672_54864094_54864219_54864918
58696	chr2	+	2648	9	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	81098	34341	-183	4853	internal_fragment	FALSE	canonical	3	18	junction_8	5.02493781056044	28	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTAGGATGGATGATGT	NA	False	NA	NA	False	NA	NA	NA	49590407	49630449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094
58698	chr8	-	1366	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	49.3529562003563	355	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGGCTGTGTTCCATAG	NA	False	NA	NA	False	NA	NA	NA	106434779	106430286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434675
58701	chr18	-	397	1	NIC	ENSMUSG00000052928.10	novel	6031	12	NA	NA	117267	-88386	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGATTAATTATAGAAAATAA	NA	False	NA	NA	False	NA	NA	NA	75653077	75652680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_75652700_75653100
58702	chr17	-	3035	8	NNC	ENSMUSG00000061728.6	novel	1763	9	NA	NA	4090	1271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3.45229884959845	24	10	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGAACATAGTGGCATTC	NA	False	NA	NA	False	NA	NA	NA	34762535	34750579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34752582_34752929_34752957_34756066_34756094_34759687_34759740_34760022_34760224_34760335_34760618_34761427_34761779_34762442
58703	chr7	-	1042	3	FSM	ENSMUSG00000002985.17	ENSMUST00000173739.8	1221	3	181	-2	21	2	multi-exon	FALSE	canonical	3	10421	junction_2	50	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAGTCTCTGTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	19432151	19430194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19431029_19431403_19431573_19432112
58704	chr6	-	1373	7	FSM	ENSMUSG00000068250.14	ENSMUST00000095319.10	1369	7	-13	9	-3	-4	multi-exon	FALSE	canonical	2	4	junction_6	36.5087508535815	35	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACACTTCTATTGTCCCA	NA	False	NA	NA	False	NA	NA	NA	149090196	149059084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089733
58706	chr12	+	2508	5	NIC	ENSMUSG00000020605.10	novel	2959	7	NA	NA	7	-4	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	61.9515940069342	3	147	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATTTCAGTGTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	8363438	8393820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8363498_8367784_8367951_8386237_8386396_8387632_8387769_8391831
58707	chr5	-	1350	8	NIC	ENSMUSG00000015806.13	novel	1380	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	461.684758603238	2117	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	NA	False	NA	NA	NA	45607497	45591394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45605933_45605985_45607348
58708	chr16	+	2557	1	Antisense	novelGene_ENSMUSG00000022890.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCAGTGAGCCAAGCACT	NA	False	NA	NA	False	NA	NA	NA	84624904	84627461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_84624900_84627500
58709	chr7	-	1134	9	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	37	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	675.030740040778	12	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGACACCTAGAGGAGGC	NA	False	NA	NA	False	NA	NA	NA	33929630	33901602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33920044_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
58710	chr15	-	3788	24	ISM	ENSMUSG00000022562.16	ENSMUST00000171340.9	4081	27	1086	5	1086	-3	3prime_fragment	FALSE	canonical	2	7	junction_11	7.25083920571582	30	68	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTTATTGGGTTATTG	9750	False	NA	NA	False	NA	NA	NA	76190215	76180805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76180982_76181120_76181219_76181316_76181478_76181558_76181717_76181818_76181969_76182105_76182241_76182335_76182483_76182586_76182772_76185025_76185201_76185292_76185395_76185486_76185648_76186245_76186398_76186581_76186695_76186830_76186970_76187055_76187194_76187377_76187549_76187635_76187749_76188286_76188553_76188665_76188734_76188833_76188973_76189092_76189259_76189339_76189536_76189647_76189772_76189860
58711	chr6	-	1446	13	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-930	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_9	21.6260837878706	299	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	115737162	115706091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115736555_115736685_115737065
58712	chr7	-	1890	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	181	0	76	0	multi-exon	FALSE	canonical	3	93	junction_6	34.291945118351	276	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAAGCCTCTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	30672671	30657201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
58715	chr2	+	1677	8	FSM	ENSMUSG00000002104.12	ENSMUST00000050323.6	1606	8	-71	0	-50	0	multi-exon	FALSE	canonical	3	40	junction_4	10.5791477608992	286	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	NA	False	NA	NA	NA	90865914	90876074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
58716	chr6	-	1083	3	ISM	ENSMUSG00000004988.10	ENSMUST00000204214.3	550	9	2162	3	780	-3	intron_retention	FALSE	canonical	2	5	junction_2	4.5	737	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTTTTGTGGTCTTGTG	4681	False	NA	NA	False	NA	NA	NA	117912134	117910523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_117910710_117910804_117910843_117911275
58717	chr12	+	1497	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	0	3	0	1	multi-exon	FALSE	canonical	3	105	junction_3	15.6276108929747	272	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATATCAATGTCTCAGCAG	NA	False	NA	NA	False	NA	NA	NA	69215587	69225780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
58718	chr14	-	2017	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	-37	3409	-37	-3409	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	234	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGAATGATTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	76348237	76327084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
58719	chr12	-	1375	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2749.88108833818	1	70	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCCTATTTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636418_111636609_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
58720	chr13	-	1259	4	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	10	-93	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	61.6459424635736	46	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTAACTGTGTGGTAAAAC	NA	False	NA	NA	False	NA	NA	NA	62564847	62550399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62551375_62555228_62555290_62555482_62555610_62564751
58721	chr8	-	1614	4	NNC	ENSMUSG00000033106.7	novel	1246	5	NA	NA	0	273	intron_retention	FALSE	canonical	3	16	junction_2	53.0471488394994	528	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAGCAAGCAGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	106937565	106927075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106927782_106928862_106928992_106930962_106931173_106936996
58722	chr4	+	1395	10	NNC	ENSMUSG00000028601.19	novel	1307	10	NA	NA	-14	0	intron_retention	FALSE	canonical	0	0	junction_1	249.828434958033	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	NA	False	NA	NA	NA	108022700	108036505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108022859_108026756_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
58723	chr2	-	1442	9	NNC	ENSMUSG00000040591.19	novel	1977	9	NA	NA	12	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.8640660785394	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTCTGGTAAGCAA	NA	False	NA	NA	False	NA	NA	NA	91274955	91108603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91109218_91109523_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
58725	chr13	+	854	4	Antisense	novelGene_ENSMUSG00000045136.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	29	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCTACGGGCTGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	34311206	34314321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34311455_34311760_34312114_34313245_34313340_34314162
58726	chr9	-	469	2	Genic_Genomic	ENSMUSG00000061167.10	novel	615	1	NA	NA	-35	59	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTGACTGTAACAT	NA	False	NA	NA	False	NA	NA	NA	22097552	22096843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_22097170_22097409
58727	chr15	+	1299	13	NNC	ENSMUSG00000056851.15	novel	1215	14	NA	NA	-17	3190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	166.70199625546	15	28	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGCTCTAAATGTTGTG	2210	False	NA	NA	False	NA	NA	NA	102379174	102402319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396710_102398177_102398243_102399068_102399239_102402095
58728	chr12	+	2010	8	NIC	ENSMUSG00000052160.8	novel	1982	11	NA	NA	-1538	-3	intron_retention	FALSE	canonical	3	9	junction_2	3.09047252182628	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTCTGTCTGTGTTCTC	7177	False	NA	NA	False	NA	NA	NA	112729985	112735421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_112730581_112730881_112731003_112731431_112731560_112733136_112733338_112733931_112734072_112734187_112734354_112734458_112734556_112734859
58729	chr10	+	821	4	NNC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1166.91397378822	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	4522	False	NA	NA	False	NA	NA	NA	79978225	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79978441_79979665_79979820_79981052_79981127_79981269
58730	chr15	+	1174	3	ISM	ENSMUSG00000022564.8	ENSMUST00000229916.2	854	5	496	-655	496	1	3prime_fragment	FALSE	canonical	3	82	junction_2	6.5	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGCTTCTCCTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	76132759	76134105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76133101_76133177_76133322_76133416
58732	chr17	-	3345	5	Antisense	novelGene_ENSMUSG00000046070.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_4	2.1650635094611	12	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCATTAGAACATTTGAT	NA	False	NA	NA	False	NA	NA	NA	25097527	25083384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_25086378_25086486_25086600_25091026_25091101_25094553_25094653_25097461
58733	chr1	-	1659	9	ISM	ENSMUSG00000026705.17	ENSMUST00000117467.7	3195	13	-23	9783	-9	-1718	5prime_fragment	FALSE	canonical	3	82	junction_5	11.5	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTCAATATACTTTCAATA	NA	False	NA	NA	False	NA	NA	NA	160959021	160925732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_160925967_160926711_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
58735	chr6	+	1449	9	NIC	ENSMUSG00000029848.12	novel	1455	9	NA	NA	-58	-1	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	25.8202924073295	196	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTTTTGGTGTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	34897836	34916276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_34897990_34904653_34904789_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
58737	chr8	-	1094	1	Intergenic	novelGene_1621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACACTTGAGCACCCCTCC	8169	False	NA	NA	False	NA	NA	NA	41104690	41103596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_41103600_41104700
58740	chr7	+	1606	8	ISM	ENSMUSG00000035203.17	ENSMUST00000208634.2	2127	10	9130	-1	3047	1	3prime_fragment	FALSE	canonical	3	89	junction_5	22.85357114951	194	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGTGGCTCCCTTAAATT	193	False	NA	NA	False	NA	NA	NA	5095883	5101176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
58741	chr7	+	1441	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	34	4	-1	-1	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	3017	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTGATTGTGATGCCT	NA	False	NA	NA	False	NA	NA	NA	115692569	115704441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
58742	chr3	-	1017	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20542	105	intron_retention	FALSE	canonical	3	11	junction_1	0	29	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGCACAGTTATTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	103126833	103105436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103106413_103126792
58743	chr16	+	1698	6	NNC	ENSMUSG00000022744.13	novel	1540	6	NA	NA	34	-24	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	156.329139957975	85	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAATCATGTAGAGTGTC	NA	False	NA	NA	False	NA	NA	NA	58548321	58554590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201_58553997_58554372
58744	chr3	+	2520	10	FSM	ENSMUSG00000027985.15	ENSMUST00000106341.9	3357	10	794	43	794	-43	multi-exon	FALSE	canonical	3	22	junction_9	8.71779788708135	37	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGTGTCATTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	130904913	131017962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_131016724
58747	chr1	+	3271	2	Antisense	novelGene_ENSMUSG00000078185.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGGTGACTCCGAACAG	NA	False	NA	NA	False	NA	NA	NA	175513055	175519815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_175516247_175519735
58748	chr9	+	1887	10	Antisense	novelGene_ENSMUSG00000034218.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAGAAGTCGGCATGCGC	NA	False	NA	NA	False	NA	NA	NA	53427389	53448002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_53427876_53429801_53429970_53431291_53431458_53433349_53433587_53435646_53435817_53438476_53438638_53442931_53443075_53444957_53445073_53445164_53445269_53447865
58749	chr11	-	1451	13	NNC	ENSMUSG00000020311.18	novel	2532	14	NA	NA	44	330	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_7	24.8208861422974	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGTAAAATTAAAATAATC	NA	False	NA	NA	False	NA	NA	NA	30904108	30884670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899905_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
58751	chr13	-	1803	11	NNC	ENSMUSG00000021713.10	novel	2342	11	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	159.383938965004	1	76	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAATATACGTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	104365316	104341635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104341851_104341903_104342138_104343602_104343784_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104359345_104359467_104359599_104359701_104361857_104361961_104365113
58752	chr4	-	831	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9098.38236652538	2	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	NA	NA	NA	86775615	86772896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86773193_86774103_86774248_86774392_86774594_86774964_86775097_86775557
58753	chr4	-	817	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9098.38236652538	3	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCATTGGCTTTCATTA	NA	False	NA	NA	False	NA	NA	NA	86775593	86772903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86773193_86774103_86774248_86774377_86774594_86774964_86775097_86775557
58754	chr11	+	2022	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	19	21	19	-21	multi-exon	FALSE	canonical	3	249	junction_1	30.335622624235	1	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACTGCTGAAATCAC	NA	False	NA	NA	False	NA	NA	NA	113575291	113585452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
58756	chr15	+	2733	14	ISM	ENSMUSG00000022489.7	ENSMUST00000227955.2	3258	15	5039	13	-3759	-12	3prime_fragment	FALSE	canonical	2	9	junction_1	4.75307437100782	22	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGACCGGCTGGATGT	NA	False	NA	NA	False	NA	NA	NA	103428385	103438466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_103428490_103429732_103429916_103430079_103430147_103430471_103430589_103432734_103432876_103433224_103433326_103433416_103433543_103433662_103433765_103434689_103434811_103435033_103435116_103435410_103435520_103435971_103436103_103436648_103436772_103437240
58758	chr1	+	1427	3	Genic_Genomic	ENSMUSG00000101586.2	novel	2092	2	NA	NA	11883	-1814	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGACCAGAGGAAGTCCT	NA	False	NA	NA	False	NA	NA	NA	59202088	59206665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_59203374_59206340_59206441_59206623
58759	chr11	+	1033	7	NNC	ENSMUSG00000020372.16	novel	1447	8	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2885.62329585058	3	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCTTCTATATGTGA	NA	False	NA	NA	False	NA	NA	NA	48691184	48696912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_48691400_48692489_48692662_48693099_48693242_48694640_48694796_48694991_48695124_48696371_48696483_48696806
58760	chr10	+	1054	9	ISM	ENSMUSG00000035027.19	ENSMUST00000105331.8	1556	11	9078	0	-3587	0	3prime_fragment	FALSE	canonical	3	562	junction_5	66.1891229734916	271	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGGCTGTGCTCCTGCC	NA	False	NA	NA	False	NA	NA	NA	80950858	80959717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956879_80956945_80957736_80957799_80958400_80958447_80959453
58761	chr17	-	907	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	137	2	0	-1	multi-exon	FALSE	canonical	3	4626	junction_6	706.208473585007	6297	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTGTGACTTCTTGTA	NA	False	NA	NA	False	NA	NA	NA	31877729	31866056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
58762	chr10	-	1759	4	NNC	ENSMUSG00000020077.15	novel	1727	4	NA	NA	-6258	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	7.25718035235908	58	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATATGATATAAAATGT	NA	False	NA	NA	False	NA	NA	NA	62350134	62329611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62330886_62333557_62333703_62343420_62343616_62349989
58763	chr17	+	1707	13	NNC	ENSMUSG00000011589.10	novel	1748	13	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	16.62494778605	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCCCTCCTGCACTGGTT	3933	False	NA	NA	False	NA	NA	NA	56293510	56303878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302394_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
58764	chr7	+	1393	11	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-12500	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	150.001366660441	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTCTAGTTTCTGGTCC	4199	False	NA	NA	False	NA	NA	NA	97166860	97190605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179549_97179593_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
58766	chr5	+	2629	16	NIC	ENSMUSG00000023353.15	novel	3207	18	NA	NA	85	-17	combination_of_known_junctions	FALSE	canonical	3	94	junction_11	24.1655402036316	54	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTGTATGTGTGGCC	NA	False	NA	NA	False	NA	NA	NA	24657416	24707018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24704655_24704811_24704912_24705004_24705120_24705344_24706007_24706264_24706394
58768	chr4	-	1423	11	Antisense	novelGene_ENSMUSG00000088349.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	36	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGACAAGCCAAGAGCGC	NA	False	NA	NA	False	NA	NA	NA	116944052	116876622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_116876672_116879349_116879508_116885605_116885752_116901630_116901791_116915958_116916048_116922534_116922664_116923568_116923759_116925936_116926016_116927832_116927983_116938752_116938857_116943883
58769	chr1	-	2153	2	ISM	ENSMUSG00000043467.20	ENSMUST00000159250.9	2473	5	417	11694	-147	1485	internal_fragment	FALSE	canonical	2	4	junction_1	0	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCCTGGCCTGGAACTC	NA	False	NA	NA	False	NA	NA	NA	160862001	160858522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_160860332_160861657
58770	chr14	+	1932	13	Genic_Genomic	ENSMUSG00000040840.8_ENSMUSG00000091306.3	novel	968	6	NA	NA	1217	-1292	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	34	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCCTAAAAAAATTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	54879625	54890772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_54880293_54880438_54880508_54881181_54881275_54881394_54881450_54881895_54882016_54882142_54882252_54882670_54882814_54883061_54883198_54883904_54884027_54884160_54884296_54885546_54885590_54889177_54889316_54890670
58775	chr4	-	3550	15	FSM	ENSMUSG00000028931.13	ENSMUST00000030768.10	3597	15	41	6	-4	4	multi-exon	FALSE	canonical	1	4	junction_13	3.43748840443313	15	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCACGTTTCTGATCTC	NA	False	NA	NA	False	NA	NA	NA	152562005	152475207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152520261_152520395_152561857
58776	chr15	-	2026	1	ISM	ENSMUSG00000051359.16	ENSMUST00000168992.8	3538	7	423695	105	90236	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTTATTATTTAATATCA	NA	False	NA	NA	False	NA	NA	NA	37368549	37366523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_37366500_37368500
58777	chr11	-	1279	10	NIC	ENSMUSG00000037935.17	novel	2919	11	NA	NA	4	-14	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	198.840962568234	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTAATGGTGTTATGT	NA	False	NA	NA	False	NA	NA	NA	99121267	99100831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99119100_99119145_99119322_99119375_99121227
58778	chr1	-	1635	7	ISM	ENSMUSG00000060771.16	ENSMUST00000155852.7	2861	8	9699	1176	0	-340	3prime_fragment	FALSE	canonical	2	9	junction_4	7.0178344238091	9	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATGGTCAAATTGAACC	NA	False	NA	NA	False	NA	NA	NA	37894455	37873691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_37874417_37874502_37874674_37879579_37879739_37880265_37880434_37881535_37881602_37888311_37888528_37894325
58779	chr1	-	1635	1	NIC	ENSMUSG00000060771.16	novel	3400	20	NA	NA	9360	-324	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAAGCCACTAAGTTC	NA	False	NA	NA	False	NA	NA	NA	37873442	37871807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_37871800_37873400
58781	chr2	+	3353	29	Antisense	novelGene_ENSMUSG00000015647.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	33	13	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGTGCCTTGTTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	179835660	179863121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_179835687_179835764_179835868_179836285_179836392_179836467_179836623_179836930_179837093_179837164_179837281_179837353_179837496_179837675_179837818_179837963_179838117_179838275_179838379_179838829_179838934_179839017_179839068_179839164_179839272_179839509_179839563_179840053_179840194_179840267_179840405_179840489_179840624_179840722_179840861_179840942_179841084_179843250_179843314_179843513_179843649_179843771_179843863_179843953_179844075_179844184_179844300_179848510_179848616_179848725_179848897_179848979_179849099_179850046_179850163_179863016
58782	chr3	-	1514	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	23	1564	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCACAAAATTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	53771228	53763678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764301_53764771_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
58783	chr1	-	1952	7	ISM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	7945	6	4328	-4	3prime_fragment	FALSE	canonical	3	773	junction_5	94.871843381831	1	130	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGTGTTTATTATGTG	NA	False	NA	NA	False	NA	NA	NA	65210395	65197780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117
58784	chr8	-	1782	4	Fusion	ENSMUSG00000048967.17_ENSMUSG00000036199.10	novel	1251	5	NA	NA	910	2081	intron_retention	FALSE	canonical	0	0	junction_1	2903.28140022439	9703	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGTAGTGCAGTTTGC	NA	False	NA	NA	False	NA	NA	NA	70354298	70344748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_70345381_70346261_70347226_70347891_70347971_70354191
58785	chr2	-	1633	8	FSM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	128	0	128	0	multi-exon	FALSE	canonical	2	2	junction_5	63.4909603078763	486	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	NA	False	NA	NA	False	NA	NA	NA	84652868	84641519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321_84647368_84647467_84647601_84648619_84649255_84652836
58786	chr14	+	2532	4	NIC	ENSMUSG00000040640.12	novel	3339	8	NA	NA	4	1402	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	17.7451088722749	78	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACATTCTTGTTTGTTTGT	2344	False	NA	NA	False	NA	NA	NA	27344402	27377161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_27344572_27345639_27345707_27374643_27375441_27375662
58787	chr3	+	1557	6	NNC	ENSMUSG00000007379.16	novel	4979	19	NA	NA	3810	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	110.456145143672	24	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATTCCCACAGATCTC	8527	False	NA	NA	False	NA	NA	NA	103038681	103077048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048438_103076935
58788	chr3	-	858	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	109	10	109	-10	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	4	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCGTTTGCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	86049900	86045256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
58789	chrM	+	466	1	FSM	ENSMUSG00000064353.1	ENSMUST00000082404.1	70	1	-464	68	-464	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	107	False	NA	165	True	NA	NA	NA	6477	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6500_6900
58790	chr19	+	1088	2	Genic_Genomic	ENSMUSG00000102349.2	novel	453	1	NA	NA	-584	123	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTCTATTAGCTTAAGT	1641	False	NA	NA	False	NA	NA	NA	5851384	5852544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5851924_5851995
58791	chr18	+	1954	3	Antisense	novelGene_ENSMUSG00000024376.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	28	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCCCGGGGCGTCGGCAA	NA	False	NA	NA	False	NA	NA	NA	34136758	34140068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34138028_34139037_34139474_34139819
58792	chr10	+	2310	11	NNC	ENSMUSG00000037846.19	novel	3932	13	NA	NA	7589	203	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	37.5717979340888	1	114	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTTAAAGGGAATTTGT	NA	False	NA	NA	False	NA	NA	NA	67823133	67878331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_67823332_67833394_67833454_67837760_67837808_67839033_67839152_67841329_67841501_67853637_67853731_67861342_67861450_67862347_67862471_67871618_67871782_67875860_67875969_67877208
58793	chr11	-	1650	1	Intergenic	novelGene_2452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	607	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATGCAGCCAAAACATCAA	NA	False	NA	NA	False	NA	NA	NA	88898637	88896987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_88897000_88898600
58794	chr5	-	1996	1	Intergenic	novelGene_678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCTGAAGGACCATATTG	NA	False	NA	NA	False	NA	NA	NA	30254739	30252743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_30252700_30254700
58795	chrX	+	1438	1	FSM	ENSMUSG00000057615.6	ENSMUST00000075983.6	1459	1	16	5	16	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	109	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCAAACTGTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	60753118	60754556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_60753100_60754600
58796	chr17	+	2063	11	ISM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	559	595	22	-595	3prime_fragment	FALSE	canonical	3	585	junction_6	35.9699874895725	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTTCCCCAGGTGGCCT	NA	False	NA	NA	False	NA	NA	NA	36291301	36299759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
58797	chr7	-	1791	10	NIC	ENSMUSG00000025494.9	novel	1612	10	NA	NA	-125	-2	combination_of_known_splicesites	FALSE	canonical	3	90	junction_9	19.9616917069288	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCCGGGCTTATTTCTG	NA	False	NA	NA	False	NA	NA	NA	140676777	140671091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
58798	chr17	+	2015	1	ISM	ENSMUSG00000024027.9	ENSMUST00000114574.3	5811	13	34711	2249	34669	975	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTTTTGAATGGC	2632	False	NA	NA	False	NA	NA	NA	31155501	31157516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_31155500_31157500
58799	chrX	-	1941	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	63	19	19	-19	multi-exon	FALSE	canonical	3	11	junction_2	8.5	101	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	73416892	73412841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73414618_73416219_73416289_73416796
58800	chrX	-	2311	1	Intergenic	novelGene_3884	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAGGGTGTTTGTGAAGA	NA	False	NA	NA	False	NA	NA	NA	18111209	18108898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_18108900_18111200
58801	chr2	-	1292	4	Intergenic	novelGene_2583	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	25.7725090401036	39	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGAATCTTTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	26530256	26527187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_26527646_26528052_26528108_26529424_26529522_26529574
58802	chr10	+	1536	1	FSM	ENSMUSG00000046687.7	ENSMUST00000053865.7	1240	1	-61	-235	-61	235	mono-exon	FALSE	NA	NA	NA	NA	NA	1	79	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTACATTAGTCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61906840	61908376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61906800_61908400
58803	chr10	-	1960	1	NIC	ENSMUSG00000035673.11	novel	3772	6	NA	NA	-5902	1028	mono-exon	FALSE	NA	NA	NA	NA	NA	6	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTCCCCTCCTGGAGTG	NA	False	NA	NA	False	NA	NA	NA	79917175	79915215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79915200_79917200
58804	chr11	+	2244	10	NIC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	-40	-13	intron_retention	FALSE	canonical	3	82	junction_1	26.418755029031	64	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATACAAGTGTATGCTTTG	7736	False	NA	NA	False	NA	NA	NA	58197957	58205426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
58805	chr4	+	1918	8	Antisense	novelGene_ENSMUSG00000029022.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	89	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAACGCTCTCCGCCCGAA	4375	False	NA	NA	False	NA	NA	NA	147945303	147952943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147945554_147945817_147945951_147946707_147946804_147946902_147947591_147949643_147949736_147950116_147950474_147950692_147950874_147952822
58806	chr3	-	1272	2	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20523	117	intron_retention	FALSE	canonical	1	2	junction_1	0	16	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTTGCAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	103126814	103105424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103106316_103126433
58808	chr17	+	1859	3	Antisense	novelGene_ENSMUSG00000062012.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACTGCCTACCCAATGCT	3627	False	NA	NA	False	NA	NA	NA	23811768	23814172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_23812320_23812465_23813067_23813465
58809	chr11	+	964	1	Intergenic	novelGene_2387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAATTAGAGTTTAAATG	7536	False	NA	NA	False	NA	NA	NA	67578777	67579741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_67578800_67579700
58810	chr3	-	1658	11	FSM	ENSMUSG00000033439.13	ENSMUST00000184963.8	1616	11	-47	5	4	-4	multi-exon	FALSE	canonical	3	22	junction_2	31.2251501197352	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATCAATCTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	116388532	116374747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
58811	chr11	+	422	2	NNC	ENSMUSG00000025161.17	novel	2386	5	NA	NA	3043	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAAAGTGGTTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	120849094	120849593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120849159_120849235
58812	chrX	+	1152	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5605.09585605416	1	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059350	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060962_36061408_36061530_36062039
58814	chr3	+	2461	6	FSM	ENSMUSG00000028057.15	ENSMUST00000172333.8	993	6	27	-1495	15	2	multi-exon	FALSE	canonical	2	5	junction_2	24.0881713710277	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTGTCAGATTTTTTT	2305	False	NA	NA	False	NA	NA	NA	88624232	88638350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88624265_88624632_88624778_88624879_88624966_88633301_88633376_88633586_88633779_88636418
58815	chr3	+	2591	1	Intergenic	novelGene_3147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTAGACTTTAGTCCACC	899	False	NA	NA	False	NA	NA	NA	88610650	88613241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_88610600_88613200
58816	chr2	-	1737	2	FSM	ENSMUSG00000016252.8	ENSMUST00000149191.2	1697	2	-40	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	21	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGGTTTTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	174305882	174302867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_174303015_174304292
58817	chr8	+	1561	10	NNC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	-7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	88.8169153058383	4	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCATTATCAGTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	117648461	117668238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661487_117667182_117667310_117667573
58818	chr2	-	1206	1	ISM	ENSMUSG00000051396.16	ENSMUST00000124331.8	4314	5	5032	1993	5032	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGAGCTATTTGAGCACT	9031	False	NA	NA	False	NA	NA	NA	3508762	3507556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_3507600_3508800
58819	chr12	-	963	5	FSM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	-17	-223	0	217	multi-exon	FALSE	canonical	3	69	junction_1	152.938508885107	349	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATAAAGATTTGCTTTA	3361	False	NA	NA	False	NA	NA	NA	110855567	110841244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110841711_110843274_110843405_110846118_110846249_110850323_110850493_110855499
58822	chr3	+	1190	2	Genic_Genomic	ENSMUSG00000074637.8	novel	2057	1	NA	NA	-410	-246	multi-exon	FALSE	canonical	0	0	junction_1	0	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAATATTTTCTTATGG	4197	False	NA	-58	True	NA	NA	NA	34704143	34706364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_34704338_34705368
58823	chr17	+	2388	2	Fusion	ENSMUSG00000060417.7_ENSMUSG00000090211.4	novel	2463	3	NA	NA	13	759	multi-exon	FALSE	canonical	0	0	junction_1	0	37	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCGGAGGTTTTCCTGC	NA	False	NA	NA	False	NA	NA	NA	13721228	13739290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_13721317_13736990
58824	chr5	-	2360	8	ISM	ENSMUSG00000038859.8	ENSMUST00000055190.8	3247	14	73646	0	4441	0	3prime_fragment	FALSE	canonical	3	19	junction_2	3.01018678652935	28	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTGTAAGTGGTACC	2291	False	NA	NA	False	NA	NA	NA	144221276	144201335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_144202843_144203417_144203456_144212582_144212776_144214454_144214527_144215337_144215549_144217629_144217778_144218799_144218968_144221253
58827	chr14	-	1723	1	Intergenic	novelGene_530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATGCTATCCCAAAAGT	NA	False	NA	NA	False	NA	NA	NA	26245384	26243661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_26243700_26245400
58828	chr3	+	1963	14	FSM	ENSMUSG00000045576.17	ENSMUST00000059271.13	5728	14	599	3166	-11	38	multi-exon	FALSE	canonical	3	59	junction_11	6.94526359402813	100	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTGTAAACAAAACTTTG	679	False	NA	NA	False	NA	NA	NA	104772417	104834214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
58831	chr5	-	1118	9	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	44	419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	715.276159518126	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGAGCTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	25047563	25008245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25008732_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182_25047349_25047507
58832	chr6	-	2048	2	FSM	ENSMUSG00000038236.9	ENSMUST00000048715.9	2009	2	-32	-7	-32	0	multi-exon	FALSE	canonical	2	12	junction_1	0	35	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGACTGCTTTATCCAGA	9922	False	NA	NA	False	NA	NA	NA	52194517	52191470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_52193011_52194009
58834	chr3	-	799	2	ISM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	137	-179	137	2	intron_retention	FALSE	canonical	3	316	junction_1	0	31	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTATGTACTTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	102073119	102070499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_102070850_102072670
58835	chr8	-	1567	9	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	1104	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	161.409417321295	1	74	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	NA	False	NA	NA	NA	83499639	83490249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495951_83496029_83497429_83497501_83497967_83497988_83499508
58836	chr10	+	2750	7	FSM	ENSMUSG00000000732.10	ENSMUST00000105393.3	2814	7	58	6	0	-6	multi-exon	FALSE	canonical	3	8	junction_2	4.83045891539648	23	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTCTGCCTTGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	77905193	77915353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77905370_77906994_77907114_77907571_77907926_77909540_77909835_77911038_77911189_77912977_77913008_77913726
58837	chr9	+	1849	12	NNC	ENSMUSG00000010048.11	novel	2054	11	NA	NA	17	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	311.637265300488	1	89	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGGTTTATTAAAGATAAG	NA	False	NA	NA	False	NA	NA	NA	107464972	107470191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467613_107467693_107467862_107467994_107468046_107468130_107468310_107468404_107468495_107468780_107468905_107469273_107469403_107469474_107469571_107469673
58838	chr5	-	1608	10	Antisense	novelGene_ENSMUSG00000035297.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCCTCCAGGAGGCGGG	NA	False	NA	NA	False	NA	NA	NA	100695639	100666285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_100666417_100675839_100675920_100676404_100676555_100677910_100678017_100681107_100681255_100681371_100681527_100685161_100685334_100689401_100689508_100691698_100691790_100695169
58839	chr11	+	1248	5	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	-1	-6	intron_retention	FALSE	canonical	3	38	junction_2	48.2668364407696	361	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTAGACTACTCCCAATC	8950	False	NA	NA	False	NA	NA	NA	116734385	116740560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116740127_116740215
58840	chr8	+	880	6	NNC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	-2	23	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	227.302793647592	1113	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTTTCTTTATATTAA	NA	False	NA	NA	False	NA	NA	NA	80438446	80501994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_80438474_80439733_80439909_80446286_80446378_80455758_80455880_80459409_80459442_80501560
58841	chr7	+	2234	4	FSM	ENSMUSG00000060397.7	ENSMUST00000144578.2	3834	4	18	1582	18	-1	multi-exon	FALSE	canonical	2	3	junction_3	3.55902608401044	30	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCTTGTTGTGTGTAATT	NA	False	NA	NA	False	NA	NA	NA	12615121	12625767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12615288_12618569_12618697_12618949_12619046_12623922
58842	chr8	+	759	6	NNC	ENSMUSG00000005161.16	novel	1500	6	NA	NA	2	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1568.26444198675	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85696324	85700946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698267_85700712
58843	chr16	-	1151	7	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_5	171.687377391454	839	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTTAGTTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	31918552	31903235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31914370_31914527_31915817_31915882_31918287
58844	chr10	+	2210	6	NNC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-18	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	49.5192891709887	1	98	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTAAAATGGAGAACTAC	NA	False	NA	NA	False	NA	NA	NA	76869083	76886240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885447
58846	chr15	+	2302	10	FSM	ENSMUSG00000068206.14	ENSMUST00000169548.8	2325	10	23	0	-19	0	multi-exon	FALSE	canonical	3	173	junction_8	29.4081537362147	3	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTCGTGTTTCTGTG	4440	False	NA	NA	False	NA	NA	NA	79113638	79132163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79130312_79130607_79130701_79131464
58847	chr9	+	1883	2	NNC	ENSMUSG00000035274.14	novel	409	2	NA	NA	8	-1082	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	107	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAATCAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	85725421	85728011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_85725463_85726169
58848	chr4	+	1196	7	Antisense	novelGene_ENSMUSG00000028435.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	29	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGGAGCGCAGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	41092722	41098183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41093020_41093582_41093703_41093780_41094000_41094265_41094388_41094702_41094836_41095147_41095274_41098004
58849	chrX	+	1974	2	Genic_Genomic	ENSMUSG00000083576.2	novel	1100	1	NA	NA	-49392	362	multi-exon	FALSE	canonical	3	30	junction_1	0	43	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATTTGTGTGGCTTAC	NA	False	NA	NA	False	NA	NA	NA	61249261	61300115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_61249365_61298244
58850	chrX	+	1947	2	Antisense	novelGene_ENSMUSG00000071745.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCCTCCCTGCAGTAAG	NA	False	NA	NA	False	NA	NA	NA	72182303	72186085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72183282_72185116
58851	chr4	+	1898	14	Antisense	novelGene_ENSMUSG00000029016.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTGAGTCAAGGAAAAGGG	9457	False	NA	NA	False	NA	NA	NA	148095321	148108679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_148095588_148097077_148097260_148098131_148098213_148098329_148098512_148098590_148098739_148098955_148099080_148101302_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105984_148107822_148107951_148108565
58854	chr1	+	2592	14	NIC	ENSMUSG00000038305.16	novel	2315	13	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	18.2941126107012	53	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTTGCTCTTTCTA	NA	False	NA	NA	False	NA	NA	NA	57813704	57986124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_57813961_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57939792_57940000_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
58855	chr7	+	1548	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-44821	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	110.874295375439	6	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	2225	False	NA	NA	False	NA	NA	NA	81875272	81956627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81875398_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
58856	chr11	-	2548	1	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	1	-5288	mono-exon	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCCCAAAGAAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	60307876	60305328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60305300_60307900
58857	chr7	-	2295	15	FSM	ENSMUSG00000019734.17	ENSMUST00000038743.15	2310	15	14	1	14	0	multi-exon	FALSE	canonical	3	9	junction_12	9.74077271376478	133	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGCGTTTTGAAACCCC	5412	False	NA	NA	False	NA	NA	NA	3680538	3668789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
58859	chr3	-	846	7	NNC	ENSMUSG00000005779.13	novel	1183	7	NA	NA	29	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	676.616685346208	4	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGAGTTGGATTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	94794243	94791634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94791752_94791981_94792071_94792304_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
58861	chr13	-	1264	3	ISM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	79	-1	79	1	intron_retention	FALSE	canonical	3	2374	junction_2	18.5	107	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATAGTGAGTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	73476492	73467996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_73468180_73468412_73468536_73475534
58862	chr9	-	1350	7	NNC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	-11	1522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	637.56134781072	96	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	21061249	21050726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21051096_21052275_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
58863	chr10	-	815	7	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	1841.9202314131	12	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCAAGTGTGTATTTCAT	NA	False	NA	NA	False	NA	NA	NA	95337810	95316668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95316840_95322055_95322201_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
58864	chr7	+	1149	6	FSM	ENSMUSG00000063179.14	ENSMUST00000075610.13	1135	6	-14	0	-14	0	multi-exon	FALSE	canonical	3	133	junction_2	32.2713495224479	462	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	NA	False	NA	NA	NA	130972855	130989568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130989346
58865	chrX	-	2571	25	FSM	ENSMUSG00000009670.12	ENSMUST00000113716.3	2591	25	7	13	7	-13	multi-exon	FALSE	canonical	3	11	junction_1	14.9015286315047	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGAAATGTATGTCTG	NA	False	NA	NA	False	NA	NA	NA	100103266	99921500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_99921832_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
58866	chr7	+	1422	5	FSM	ENSMUSG00000078765.12	ENSMUST00000165543.8	519	5	-30	-873	0	-2	multi-exon	FALSE	canonical	3	411	junction_1	95.384419587268	7	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGTCAATCAAGGTCT	NA	False	NA	NA	False	NA	NA	NA	30262754	30264774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627
58867	chr7	-	1196	5	NNC	ENSMUSG00000074129.15	novel	992	6	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	8171.64990990192	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775442_44775526_44775962_44776132_44776699_44776919_44776971_44778112
58869	chr17	+	569	1	NIC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	1111	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTAAGTAGCAAGTGAGA	NA	False	NA	NA	False	NA	NA	NA	32272356	32272925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_32272400_32272900
58870	chr15	-	2217	9	NNC	ENSMUSG00000005125.14	novel	2889	16	NA	NA	3675	-6	intron_retention	FALSE	canonical	0	0	junction_4	18.8464187579497	1	102	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGGCTTGTGTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	66816653	66801172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809718_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66816624
58871	chr4	-	2977	5	ISM	ENSMUSG00000040606.15	ENSMUST00000155023.9	4898	15	365595	2	5974	-2	3prime_fragment	FALSE	canonical	3	14	junction_3	4.43705983732471	14	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTTCTTTCTTGTTGGC	6919	False	NA	NA	False	NA	NA	NA	141839448	141829702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141832266_141834122_141834238_141835856_141836024_141836587_141836690_141839418
58873	chr13	+	2273	9	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	-557	-2335	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	5.67340285895511	36	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAATGTGTTTTTGCGT	NA	False	NA	NA	False	NA	NA	NA	56585610	56619717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_56585844_56585944_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56618964
58874	chr5	+	3095	7	Intergenic	novelGene_760	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	81	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAGCATGCATGGAGTG	NA	False	NA	NA	False	NA	NA	NA	104235026	104261594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104236378_104237456_104237592_104238260_104238327_104240242_104241239_104242503_104242634_104245574_104245640_104261242
58876	chr9	+	3957	3	FSM	ENSMUSG00000042138.10	ENSMUST00000213411.2	742	3	-2073	-1142	-2073	0	multi-exon	FALSE	canonical	3	228	junction_2	2.5	121	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	37426331	37435444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_37428769_37430022_37430084_37433985
58878	chrX	+	691	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5605.09585605416	18	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGTTCGTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	36059306	36062459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060536_36061486_36061530_36062039
58879	chr7	-	2363	5	NIC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	712	-633	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	45.8530260724415	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTGGCACTGAATGGCA	NA	False	NA	NA	False	NA	NA	NA	25417704	25411163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25417569
58880	chr4	-	796	9	NNC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	97	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	604.089190434658	1	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6523	False	NA	NA	False	NA	NA	NA	129494295	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488976_129489056_129489076_129492805_129492836_129494201
58881	chr7	-	2260	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	-1	3	-1	-3	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	98	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGAGTTGTTGCTTAA	NA	False	NA	NA	False	NA	NA	NA	98831927	98802867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
58883	chr18	-	3170	7	FSM	ENSMUSG00000061013.7	ENSMUST00000079788.7	3650	7	16	464	16	-464	multi-exon	FALSE	canonical	2	10	junction_4	2.3392781412697	16	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACATATTGTGATTAGAT	NA	False	NA	NA	False	NA	NA	NA	7004764	6934981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_6937055_6937167_6937202_6992037_6992374_6992777_6992935_7000592_7000753_7002356_7002624_7004621
58884	chr16	-	395	1	Intergenic	novelGene_3634	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAACTCCTCCCAGACCA	5596	False	NA	NA	False	NA	NA	NA	31075805	31075410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_31075400_31075800
58885	chr16	+	865	6	NNC	ENSMUSG00000014075.16	novel	838	5	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	122.726688214096	733	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTTATGTCATGAATAGT	NA	False	NA	NA	False	NA	NA	NA	32238573	32247910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32238746_32241637_32241772_32244058_32244129_32244971_32245060_32245675_32245740_32247573
58886	chr8	-	1702	8	NNC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	0	717	intron_retention	FALSE	canonical	0	0	junction_3	171.915855070118	10	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3895	False	NA	NA	False	NA	NA	NA	95328320	95301567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95302486_95306027_95306093_95309511_95309570_95313942_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
58887	chr12	-	1324	1	NIC	ENSMUSG00000034892.9	novel	390	3	NA	NA	-35	-44	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	36	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGTCTTTGTACACAAA	NA	False	NA	NA	False	NA	NA	NA	69205863	69204539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_69204500_69205900
58888	chr4	-	2031	20	Antisense	novelGene_ENSMUSG00000077921.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACCGCTCACCAGAGCAG	5907	False	NA	NA	False	NA	NA	NA	94581446	94502804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_94502860_94506189_94506339_94510090_94510225_94512965_94513012_94515208_94515311_94515486_94515549_94520912_94520972_94524008_94524073_94541163_94541301_94543063_94543127_94546738_94546886_94549182_94549225_94550821_94550902_94566499_94566555_94567415_94567513_94568168_94568293_94573853_94574021_94575045_94575172_94579954_94580018_94581187
58889	chr9	-	1123	4	NNC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	1169	1366	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCCCTGCTCTAGGAGC	9648	False	NA	NA	False	NA	NA	NA	108442747	108441369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108441975_108442061_108442443_108442523_108442614_108442700
58890	chr9	+	447	1	Intergenic	novelGene_1043	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTTAAGGTAAAAACAAAC	3475	False	NA	NA	False	NA	NA	NA	53289527	53289974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53289500_53290000
58891	chr13	+	2090	13	FSM	ENSMUSG00000021457.15	ENSMUST00000118756.8	2519	13	24	405	24	-405	multi-exon	FALSE	canonical	2	4	junction_2	27.5650745207288	37	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCCTTGCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	52737496	52797245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_52737642_52750993_52751091_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
58892	chr13	+	349	1	ISM	ENSMUSG00000021457.15	ENSMUST00000118756.8	2519	13	59824	5	46302	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAACAATCTCTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	52797296	52797645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_52797300_52797600
58894	chr11	-	1975	3	Antisense	novelGene_ENSMUSG00000043372.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	160	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGATGGGGGGGGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	103030742	103024145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_103024282_103024858_103024966_103029010
58895	chr4	-	1667	1	FSM	ENSMUSG00000043155.5	ENSMUST00000055436.5	1804	1	137	0	137	0	mono-exon	FALSE	NA	NA	NA	NA	NA	286	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGCCTCTGTGTCTT	7225	False	NA	NA	False	NA	NA	NA	116678767	116677100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116677100_116678800
58896	chr1	+	1691	2	FSM	ENSMUSG00000026179.15	ENSMUST00000129219.2	881	2	-10	-800	-5	-20	multi-exon	FALSE	canonical	3	1381	junction_1	0	11	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAGTACTGACACGGAAA	NA	False	NA	NA	False	NA	NA	NA	74324198	74326593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74324297_74325000
58897	chr1	-	1369	8	FSM	ENSMUSG00000026162.9	ENSMUST00000152855.3	1586	8	2	215	2	-215	multi-exon	FALSE	canonical	3	10	junction_7	8.89622712968015	114	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTTGAGGTTACCTGT	NA	False	NA	NA	False	NA	NA	NA	75101842	75006512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75101779
58898	chr1	+	1902	10	FSM	ENSMUSG00000034343.15	ENSMUST00000191368.7	1110	10	-46	-746	0	494	multi-exon	FALSE	canonical	3	40	junction_1	94.7511360236793	1146	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCTGCCTAGCATTCAC	319	False	NA	NA	False	NA	NA	NA	91178040	91214241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_91178160_91181936_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
58899	chr7	+	2350	10	NIC	ENSMUSG00000030498.16	novel	1857	10	NA	NA	-45	-4	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	14.8980071581387	78	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCCACACATTATTTGT	972	False	NA	NA	False	NA	NA	NA	51512129	51644197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_51512394_51513745_51513842_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
58901	chr12	+	2760	23	NNC	ENSMUSG00000066643.13	novel	3941	23	NA	NA	18	-1160	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	26.4190639907768	1	111	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAAGTGAGGAGCGGAC	NA	False	NA	NA	False	NA	NA	NA	9024076	9071833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037445_9039945_9040091_9045642_9045673_9046068_9046130_9053996_9054142_9055762_9055833_9056719_9056774_9058001_9058112_9058478_9058690_9062660_9062742_9065969_9066107_9066436_9066641_9068085_9068233_9069877_9070011_9071729
58902	chr15	+	2369	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	15	-391	15	391	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	59	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTAAAGCTTTGACACTG	3559	False	NA	NA	False	NA	NA	NA	76253112	76256028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
58903	chr5	-	1237	7	FSM	ENSMUSG00000015806.13	ENSMUST00000118097.8	1232	7	-6	1	-1	-1	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTTTTTCACTC	NA	False	NA	NA	False	NA	NA	NA	45607519	45591395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607431
58904	chr6	+	850	2	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	-10	-4	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGGTTGCATATG	NA	False	NA	NA	False	NA	NA	NA	148256143	148257092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_148256559_148256657
58905	chr6	+	1506	5	FSM	ENSMUSG00000067338.7	ENSMUST00000087445.7	1775	5	263	6	263	-6	multi-exon	FALSE	canonical	3	1181	junction_3	43.6312674580971	1	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGACATTTGCTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	145561745	145567199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565590_145566816
58908	chr7	+	3490	24	NIC	ENSMUSG00000036528.17	novel	3310	25	NA	NA	-150	4	combination_of_known_junctions	FALSE	canonical	3	32	junction_3	7.22105721461798	53	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGAAACATTTTTAATTT	7095	False	NA	NA	False	NA	NA	NA	107194263	107344096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_107194587_107236420_107236518_107252224_107252440_107280968_107281062_107285066_107285181_107296773_107296906_107307986_107308080_107313792_107313905_107315842_107315905_107316911_107316988_107318414_107318519_107320537_107320606_107321310_107321369_107322143_107322186_107326850_107326993_107328345_107328473_107329027_107329157_107337047_107337199_107337481_107337594_107337807_107337897_107338393_107338517_107339714_107339841_107342112_107342302_107343383
58909	chrX	+	1000	5	NIC	ENSMUSG00000031158.12	novel	2381	6	NA	NA	-24	-105	intron_retention	FALSE	canonical	3	843	junction_3	49.2290564605904	1978	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTATGTCTGCCTTCA	1165	False	NA	NA	False	NA	NA	NA	7765571	7773104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772631_7772726
58912	chr4	+	1891	9	Antisense	novelGene_ENSMUSG00000028518.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCGCCACCGCCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	104893126	104967064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_104893528_104893895_104894019_104896914_104897424_104904287_104904512_104906529_104906616_104908394_104908542_104909110_104909207_104932610_104932753_104966901
58913	chr10	-	2020	3	NNC	ENSMUSG00000039166.17	novel	2391	3	NA	NA	8915	-7	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	3.5	2	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTTGCTTTTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	25067141	25044994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_25046301_25046538_25047147_25067035
58914	chr11	+	898	7	NIC	ENSMUSG00000020514.9	novel	722	7	NA	NA	3	0	combination_of_known_junctions	TRUE	canonical	3	41	junction_2	483.207138698187	195	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTCATTGAATTATT	1484	False	NA	NA	False	NA	NA	NA	58062489	58070391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58062540_58062619_58062848_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
58915	chr5	-	1308	6	NNC	ENSMUSG00000037822.13	novel	1177	6	NA	NA	45	207	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_5	184.420606223925	62	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAATCTTTTGTTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	65650169	65606938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65642396_65642471_65650078
58916	chr2	+	1570	11	FSM	ENSMUSG00000023572.17	ENSMUST00000060455.15	1569	11	-21	20	-21	-20	multi-exon	FALSE	canonical	3	138	junction_6	15.0811140172071	544	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGATTAAATGTGTCA	NA	False	NA	NA	False	NA	NA	NA	120838862	120847365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_120839091_120839198_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
58917	chr2	-	407	4	NNC	ENSMUSG00000018770.10	novel	723	5	NA	NA	24	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1857.985109377	5	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGCTGTGATTTGTA	NA	False	NA	NA	False	NA	NA	NA	73741602	73738792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739022_73740230_73740286_73741298_73741405_73741585
58918	chr9	+	1829	7	NIC	ENSMUSG00000032599.13	novel	1846	6	NA	NA	-8	1	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	38.4693239983352	54	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGCTGCTGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	108661012	108683532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108661070_108673262_108673596_108675308_108675378_108675469_108675693_108676440_108676617_108681740_108681917_108682737
58920	chr19	-	1598	5	ISM	ENSMUSG00000046230.12	ENSMUST00000068156.8	10838	72	145076	0	-4504	0	3prime_fragment	FALSE	canonical	3	37	junction_3	7.21110255092798	35	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGGTCAATGGATATTT	NA	False	NA	NA	False	NA	NA	NA	16613215	16593049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_16594280_16596457_16596533_16596741_16596866_16597987_16598074_16613132
58921	chr8	+	1323	10	FSM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	36	0	11	0	multi-exon	FALSE	canonical	3	77	junction_1	63.9388210675343	152	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	11547603	11563287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
58922	chr3	-	1159	6	Intergenic	novelGene_3192	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGCCGTCAATCTTCAG	NA	False	NA	NA	False	NA	NA	NA	144303426	144276479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_144276560_144283345_144283513_144296370_144296434_144300658_144300710_144302581_144303033_144303079
58923	chr6	-	1566	3	ISM	ENSMUSG00000004988.10	ENSMUST00000203842.2	1189	4	-34	167	-34	-167	intron_retention	FALSE	canonical	3	12	junction_1	2	3	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTATGGTAAGAGCTGACA	2485	False	NA	NA	False	NA	NA	NA	117914330	117911976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_117911994_117912115_117912149_117912814
58924	chr7	+	2164	7	FSM	ENSMUSG00000090215.10	ENSMUST00000106847.9	1827	7	344	-681	344	681	multi-exon	TRUE	canonical	2	4	junction_2	3.71558280160133	186	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTCATTTGCAGCTAAAA	NA	False	NA	NA	False	NA	NA	NA	103979021	103986797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_103979175_103979709_103979806_103980429_103980661_103983791_103983815_103984494_103984596_103984854_103984882_103985264
58925	chr5	+	1367	2	FSM	ENSMUSG00000106674.2	ENSMUST00000202583.2	299	2	0	-1068	0	1068	multi-exon	FALSE	canonical	3	13	junction_1	0	256	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTACATACTGTTTGAGTC	NA	False	NA	NA	False	NA	NA	NA	149565074	149572323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149565217_149571098
58926	chr4	+	2550	4	FSM	ENSMUSG00000036052.15	ENSMUST00000084662.12	3302	4	59	693	15	0	multi-exon	FALSE	canonical	1	1	junction_1	12.4721912892465	24	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCTGCGCAGAAGCAGTA	-9	True	NA	NA	False	NA	NA	NA	42950454	42958732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_42950743_42953140_42953386_42956525_42957128_42957317
58928	chr11	+	1148	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	754.535489924467	3	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGGTGATAAGTATTG	NA	False	NA	NA	False	NA	NA	NA	20151418	20175464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20174744_20175043
58929	chr11	-	1086	8	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	-17	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	257.913290285946	7	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAACGGCTGTCCTGTCC	3839	False	NA	NA	False	NA	NA	NA	55310743	55285335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55285727_55290047_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
58931	chr5	-	1275	4	Antisense	novelGene_ENSMUSG00000029651.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	10.8012344973464	37	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGGGGTAGTATACTCTT	8597	False	NA	NA	False	NA	NA	NA	147949136	147941086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_147941718_147943327_147943469_147943700_147944081_147949013
58932	chr3	+	3856	16	NNC	ENSMUSG00000027665.14	novel	8917	20	NA	NA	-20	-6853	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	30.0818143660843	11	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGATTAAAAAATTAAAGCG	6985	False	NA	NA	False	NA	NA	NA	32490279	32510124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32490707_32491266_32491477_32491965_32492217_32493852_32494099_32494775_32494862_32496874_32496981_32497727_32497881_32497963_32498099_32502103_32502229_32503671_32503754_32504057_32504223_32504410_32504515_32505904_32506077_32508009_32508117_32508527_32509139_32509248
58933	chr7	-	922	8	NNC	ENSMUSG00000030750.14	novel	1120	8	NA	NA	-54	-16	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	366.156039002444	51	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTCTGTAATCCAGGGC	NA	False	NA	NA	False	NA	NA	NA	125090625	125066827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125067016_125067450_125067572_125068200_125068318_125070323_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
58934	chr3	+	479	1	ISM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	8330	3	8267	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	NA	False	NA	NA	False	NA	NA	NA	88495244	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88495200_88495700
58935	chr7	-	1026	7	FSM	ENSMUSG00000074227.13	ENSMUST00000207601.2	1304	7	256	22	254	-4	multi-exon	FALSE	canonical	0	0	junction_2	472.77185007382	1339	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTACTATGTAGTTTG	723	False	NA	NA	False	NA	NA	NA	28981081	28955769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959481_28959555_28959795_28959856_28980936
58936	chr17	+	876	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	6	2	-3	-2	multi-exon	FALSE	canonical	3	1040	junction_5	46.4732180938656	245	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGTGTGGTCAGTGCTTAG	NA	False	NA	NA	False	NA	NA	NA	46421917	46439834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
58937	chr4	-	2059	7	FSM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	33	1	-12	-1	multi-exon	FALSE	canonical	3	25	junction_6	5.79271573232759	88	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATGTCAAAATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	154059550	154048906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057236_154057426_154059025_154059153_154059323
58939	SIRV7	-	898	3	NNC	SIRV7A	novel	2462	5	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2463.5	94	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	NA	NA	NA	147905	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1349_114730_114989_147608
58940	chr10	+	2219	5	FSM	ENSMUSG00000020111.16	ENSMUST00000165405.2	1732	5	-86	-401	9	401	multi-exon	FALSE	canonical	3	163	junction_3	28.4725745235657	41	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTTGATGTTTTTAGC	NA	False	NA	NA	False	NA	NA	NA	59538393	59587928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325
58941	chr10	-	2332	2	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1014	-3	intron_retention	FALSE	canonical	3	31	junction_1	0	16	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATTATTTAAGTCAAGCA	8445	False	NA	NA	False	NA	NA	NA	84390216	84383283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_84385495_84390095
58943	chr14	+	851	8	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	0	-31	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1532.99751720448	2	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATGTGAATAAACTTTG	139	False	NA	NA	False	NA	NA	NA	101891451	101933529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
58944	chr3	+	1343	14	ISM	ENSMUSG00000028109.15	ENSMUST00000171191.6	1437	15	1	413	1	-413	5prime_fragment	FALSE	canonical	3	195	junction_6	46.8710935255838	4	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAGAAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	95466989	95492696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450
58945	chr8	+	1915	9	FSM	ENSMUSG00000008167.15	ENSMUST00000139721.8	1993	9	72	6	31	1	multi-exon	FALSE	canonical	3	68	junction_1	8.18535277187245	181	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGAGTGTGAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	85786756	85793747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
58949	chr8	-	936	6	NIC	ENSMUSG00000006589.9	novel	660	6	NA	NA	-10	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	634.519030447472	4050	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTCTCCTCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	123303602	123301374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302971_123303253_123303361_123303491
58950	chr19	+	1452	1	ISM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	12049	840	1610	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCCGGGTCCGTTT	6997	False	NA	NA	False	NA	NA	NA	6425768	6427220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6425800_6427200
58954	chr5	+	1985	10	NNC	ENSMUSG00000056310.15	novel	3044	16	NA	NA	6	10	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_9	96.9682396776019	74	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTCAAATGCCTTTAAAAA	4934	False	NA	NA	False	NA	NA	NA	130285881	130314237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130313523
58957	chr11	-	597	5	Antisense	novelGene_ENSMUSG00000069744.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGTCTGCAGCGATGG	NA	False	NA	NA	False	NA	NA	NA	97604327	97594691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_97594799_97597623_97597730_97601925_97602105_97603261_97603356_97604216
58958	chr4	-	1577	9	NNC	ENSMUSG00000029022.19	novel	1813	10	NA	NA	-3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	85.1057246899408	1	81	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTACACTTCCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	147952983	147945256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147950050_147950472_147950691_147950877_147952825
58959	chr14	-	1289	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-12	-1197	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	1814.80940803711	2	73	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTGCAGTAATGCGAC	NA	False	NA	NA	False	NA	NA	NA	36857241	36843977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853496_36853607_36855127_36855228_36855589_36855761_36857151
58960	chr8	-	2005	2	Antisense	novelGene_ENSMUSG00000045969.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	153	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGCTTCCTCCACCCCCC	NA	False	NA	NA	False	NA	NA	NA	11613251	11606874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_11607044_11611415
58962	chr5	+	2282	2	ISM	ENSMUSG00000019518.12	ENSMUST00000157031.2	2148	3	-41	-15	1	15	intron_retention	FALSE	canonical	3	71	junction_1	0	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAACAAAGAAAAAAAAAGA	8081	False	NA	NA	False	NA	NA	NA	138170267	138172649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_138170511_138170610
58963	chr9	-	1005	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	671	2	0	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	1155	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	88404944	88403104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
58964	chrX	-	868	3	Antisense	novelGene_ENSMUSG00000016239.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTACAAACCTGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	35625981	35621148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_35621300_35622256_35622406_35625413
58966	chr10	+	2775	5	FSM	ENSMUSG00000020081.6	ENSMUST00000020278.6	2258	5	255	-772	255	772	multi-exon	FALSE	canonical	1	1	junction_2	1.29903810567666	10	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGAGCTGCAGTAGTGA	NA	False	NA	NA	False	NA	NA	NA	62088471	62102541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_62088989_62093936_62094132_62096950_62097105_62097262_62097460_62100829
58967	chr9	-	1051	3	ISM	ENSMUSG00000040883.19	ENSMUST00000214569.2	879	4	229	-84	229	0	intron_retention	FALSE	canonical	3	227	junction_2	6	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCCATGGTCATTTTTT	NA	False	NA	NA	False	NA	NA	NA	21838090	21832304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21832646_21837286_21837451_21837544
58968	chr8	-	1948	5	ISM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	27616	21	-354	-1	3prime_fragment	FALSE	canonical	3	140	junction_4	27.1385334902238	3	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGGTTTTCTTTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	122528692	122523072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877
58969	chr9	+	2017	10	NNC	ENSMUSG00000032077.6	novel	2539	10	NA	NA	79	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	40.978163411056	2	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAACTGGGTATTCTGC	NA	False	NA	NA	False	NA	NA	NA	46194384	46210085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201509_46202592_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
58970	chr19	-	2431	1	ISM	ENSMUSG00000025016.12	ENSMUST00000025989.10	8096	14	50718	5	50701	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	25	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGATGCTTGCTTTCTT	5161	False	NA	NA	False	NA	NA	NA	41201718	41199287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_41199300_41201700
58971	chr4	-	1131	9	NIC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	41	-1078	combination_of_known_splicesites	FALSE	canonical	2	6	junction_7	137.617903995083	2340	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTGATAGAGAATGAAAT	-1	True	NA	NA	False	NA	NA	NA	58987078	58966516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58984743_58984860_58987037
58972	chr8	-	758	5	Antisense	novelGene_ENSMUSG00000097393.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCGCTTGTCCCGGAC	NA	False	NA	NA	False	NA	NA	NA	109949781	109801878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_109802377_109904324_109904446_109905929_109905957_109946717_109946812_109949763
58973	chr5	+	1536	9	NNC	ENSMUSG00000025538.16	novel	2264	9	NA	NA	1	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	238.389354575661	1	34	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAGAAGAACTGGATCTT	NA	False	NA	NA	False	NA	NA	NA	129875861	129892224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129875928_129878741_129878871_129881714_129881812_129882859_129882909_129883560_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891434
58974	chr11	-	2416	13	NNC	ENSMUSG00000078619.11	novel	2747	13	NA	NA	-17	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	165.317602578256	183	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATTGGTGGTGCCCAG	NA	False	NA	NA	False	NA	NA	NA	106163815	106154017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106154946_106155020_106155123_106155258_106155382_106155497_106155634_106155765_106155864_106156008_106156171_106156485_106156588_106156713_106156810_106157362_106157519_106157716_106157840_106157963_106158007_106158159_106158229_106163537
58975	chr16	-	2350	5	NNC	ENSMUSG00000002847.8	novel	1974	11	NA	NA	10085	2227	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	89.5192018507761	6	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCATAGTCATGTTTGACA	NA	False	NA	NA	False	NA	NA	NA	38228071	38214251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38216120_38217700_38217866_38221237_38221347_38225898_38225989_38227953
58976	chr17	+	1579	7	NNC	ENSMUSG00000042099.17	novel	2652	11	NA	NA	2	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	135.256135617658	1	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTATTTCTACTAAGTTC	NA	False	NA	NA	False	NA	NA	NA	34029498	34041875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34029540_34035159_34035632_34038568_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
58977	chr2	-	2094	10	FSM	ENSMUSG00000026791.15	ENSMUST00000028129.13	2108	10	17	-3	3	3	multi-exon	FALSE	canonical	3	167	junction_4	8.32666399786453	149	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCAGTGGAGCCAGAAGT	3967	False	NA	NA	False	NA	NA	NA	32872077	32862998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
58979	chr7	-	1588	1	Genic_Genomic	ENSMUSG00000030695.17	novel	NA	NA	NA	NA	2061	1131	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCCATTTTACTGCTCA	1876	False	NA	NA	False	NA	NA	NA	126394862	126393274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_126393300_126394900
58981	chr3	-	1552	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	175	4	-60	-4	multi-exon	FALSE	canonical	3	95	junction_1	8.69985632065266	216	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCCTGTGTAGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	36529868	36503075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
58983	chr2	-	791	1	Intergenic	novelGene_2798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTCAGATTGAATATATA	NA	False	NA	NA	False	NA	NA	NA	168806610	168805819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_168805800_168806600
58984	chrX	+	2086	5	NNC	ENSMUSG00000031337.17	novel	3488	15	NA	NA	-1649	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	163.189307247748	1	94	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTTCCAGGGCTATGA	NA	False	NA	NA	False	NA	NA	NA	70343325	70358897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70343385_70345339_70345433_70346106_70346221_70351305_70351483_70357254
58987	chr15	-	2382	9	ISM	ENSMUSG00000036046.15	ENSMUST00000165743.2	5032	10	27360	2277	372	3	3prime_fragment	FALSE	canonical	3	237	junction_4	17.265844172817	93	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTCAGTTTGCCCAC	NA	False	NA	NA	False	NA	NA	NA	84844812	84832197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_84833480_84833751_84833911_84834812_84834976_84837330_84837523_84838102_84838244_84839590_84839693_84839846_84839925_84840006_84840130_84844670
58988	chr11	+	1374	7	NIC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	460.919883373335	11	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	98573391	98586804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_98573764_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
58989	chr17	-	966	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174039.8	934	3	-34	2	0	-1	multi-exon	FALSE	canonical	3	110	junction_2	40	392	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTTAAATAGACTTTTTC	6010	False	NA	NA	False	NA	NA	NA	35171444	35169219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169452_35169673_35169824_35170860
58990	chr4	+	2063	10	FSM	ENSMUSG00000029056.14	ENSMUST00000105632.8	1431	10	-641	9	-641	-5	multi-exon	FALSE	canonical	3	107	junction_6	27.5228300296228	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCTCATCTGGTGAGAA	NA	False	NA	NA	False	NA	NA	NA	155058348	155065386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
58992	chr13	+	1172	9	NNC	ENSMUSG00000021645.17	novel	1222	9	NA	NA	13	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	253.654015097337	32	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATCTTGACTTTATAGA	NA	False	NA	NA	False	NA	NA	NA	100261378	100274196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264751_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
58993	chr7	-	1858	2	ISM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	1253	3	1253	-1	intron_retention	FALSE	canonical	3	83	junction_1	0	4	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGACGAGTCCAGACTTT	NA	False	NA	NA	False	NA	NA	NA	30291114	30289108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30289633_30289780
58994	chr7	+	1930	9	Genic_Genomic	ENSMUSG00000092381.2	novel	618	2	NA	NA	2157	27566	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGGGGGGCCCGGGGAG	NA	False	NA	NA	False	NA	NA	NA	19451097	19483222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_19451712_19453119_19453210_19453358_19453422_19455277_19455434_19463964_19464111_19464535_19464653_19466837_19467137_19471936_19472303_19483143
58996	chr17	+	1012	6	NIC	ENSMUSG00000002767.14	novel	1031	7	NA	NA	45	-3	intron_retention	FALSE	canonical	3	1085	junction_2	45.8693797647189	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTCTTACTACCTTTT	NA	False	NA	NA	False	NA	NA	NA	46957240	46961054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959696_46959960_46960035_46960809
58997	chr6	+	1255	10	FSM	ENSMUSG00000034744.14	ENSMUST00000146117.8	1049	10	16	-222	-11	0	multi-exon	FALSE	canonical	3	35	junction_1	70.680816193489	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9500	False	NA	NA	False	NA	NA	NA	83772205	83779538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83772357_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
58998	chrX	-	1782	12	NNC	ENSMUSG00000067567.13	novel	1936	11	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.9124085381874	73	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTAGCTCGTCCCACCGC	NA	False	NA	NA	False	NA	NA	NA	101548752	101328249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101328775_101338258_101338323_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
58999	chr11	+	1337	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	29	-4	-8	4	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	153	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTCTCCAGCAACTCTC	1010	False	NA	NA	False	NA	NA	NA	101339261	101349528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
59001	chr11	-	2444	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	47	-294	8	-28	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAGAAATAAAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	96668338	96658408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
59003	chr6	-	411	1	FSM	ENSMUSG00000108772.2	ENSMUST00000206958.2	485	1	276	-202	276	202	mono-exon	FALSE	NA	NA	NA	NA	NA	8	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTGAAAAAAAAAAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	71618804	71618393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_71618400_71618800
59004	chr19	-	1370	1	Intergenic	novelGene_1251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACCTGGGACCCAGTGC	NA	False	NA	NA	False	NA	NA	NA	38310211	38308841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_38308800_38310200
59007	chr2	-	2174	11	NNC	ENSMUSG00000013465.20	novel	2637	13	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_2	181.518070725754	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGTGAGGAATCTGTT	NA	False	NA	NA	False	NA	NA	NA	25101384	25089727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25090479_25090670_25090750_25093422_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
59008	chr19	+	1785	9	NNC	ENSMUSG00000024785.8	novel	1803	9	NA	NA	20	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	130.328850892655	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAATTGCACTGTAGTGTA	NA	False	NA	NA	False	NA	NA	NA	29078794	29121241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105529_29108049_29108207_29111799_29111904_29120541
59009	chr3	+	1443	1	FSM	ENSMUSG00000001416.14	ENSMUST00000193666.2	1831	1	710	-322	639	322	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTTTAAGTTAGGAA	4515	False	NA	NA	False	NA	NA	NA	88205133	88206576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88205100_88206600
59010	chr3	+	869	1	ISM	ENSMUSG00000001416.14	ENSMUST00000167000.8	3335	12	2297	21219	2232	1341	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGGAAGAGGGCATCAGA	195	False	NA	NA	False	NA	NA	NA	88206726	88207595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88206700_88207600
59011	chr5	+	2110	1	Intergenic	novelGene_745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTGTCTTTATAAGAG	NA	False	NA	NA	False	NA	NA	NA	90395483	90397593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_90395500_90397600
59014	chr4	-	767	6	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8600.95314253019	4	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTTTCATTAATAGT	NA	False	NA	NA	False	NA	NA	NA	86775608	86772898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86773193_86774103_86774251_86774382_86774451_86774515_86774598_86774971_86775097_86775557
59017	chrX	-	927	6	NIC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	-9	5	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	227.558871503618	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACGTGGCTTGAGTGATA	NA	False	NA	NA	False	NA	NA	NA	99669553	99666508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_99667034_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
59019	chr7	-	2005	11	FSM	ENSMUSG00000030549.7	ENSMUST00000032766.5	2090	11	85	0	85	0	multi-exon	FALSE	canonical	2	10	junction_10	3.38969025133566	53	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGGGAGTGGATGTTCT	NA	False	NA	NA	False	NA	NA	NA	79267320	79243110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79243549_79244529_79244737_79248288_79248363_79248717_79248843_79249104_79249242_79249426_79249565_79250241_79250409_79251334_79251483_79253487_79253639_79257292_79257480_79267087
59020	chr17	+	1068	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	79	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	3	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATAGCTGAATTTTGTTT	3115	False	NA	NA	False	NA	NA	NA	35816993	35821665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821246_35821456
59021	chr5	+	1238	2	NNC	ENSMUSG00000105617.5	novel	338	3	NA	NA	16	-103681	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCAGTACTTTGGATTGA	7691	False	NA	NA	False	NA	NA	NA	31754297	31755615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31755269_31755348
59022	chr10	-	1385	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	-201	6	-199	0	multi-exon	FALSE	canonical	3	48	junction_2	8.9977775033616	256	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTCATCTCTGTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	18110945	18089429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
59023	chr19	+	2350	8	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	2557	95	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	136.77972758253	2	128	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAGTAGTAAGTAGTAAG	NA	False	NA	NA	False	NA	NA	NA	60803034	60824760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814362_60819220_60819333_60821021_60821117_60823263
59024	chr7	-	380	6	ISM	ENSMUSG00000074129.15	ENSMUST00000210967.2	658	8	-16	600	0	-44	5prime_fragment	FALSE	canonical	3	11064	junction_5	2443.15342129798	225	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCTGCTCTCAAGGTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
59025	chr5	-	2079	14	Antisense	novelGene_ENSMUSG00000029106.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	20	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATAAGCATATAGAATT	NA	False	NA	NA	False	NA	NA	NA	34782706	34755510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_34755791_34758665_34758884_34762035_34762197_34763171_34763324_34767535_34767616_34767832_34767983_34770630_34770774_34770860_34770960_34771525_34771702_34773902_34774157_34776691_34776794_34777386_34777472_34778167_34778261_34782620
59027	chr8	+	800	6	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	25	1201	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3075.43677548409	1	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTACCAGTAAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	57964965	57967444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965040_57965612_57965783_57966095_57966242_57966323_57966499_57966999_57967162_57967371
59029	chr6	-	1238	3	FSM	ENSMUSG00000033735.10	ENSMUST00000045986.8	1230	3	-8	0	-8	0	multi-exon	FALSE	canonical	3	345	junction_2	5	1184	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGTGTGCGTTGTCCTTC	7974	False	NA	NA	False	NA	NA	NA	85114756	85110659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_85111271_85113804_85114096_85114420
59030	chr2	-	827	1	Intergenic	novelGene_2857	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACACACACACACACACA	NA	False	NA	NA	False	NA	NA	NA	177694655	177693828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_177693800_177694700
59031	chr14	+	2683	17	NNC	ENSMUSG00000021747.13	novel	2681	16	NA	NA	21	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	59.331563058797	58	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGAGAGTGCTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	13803554	14038577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13943492_13943563_13951006_13951144_13951822_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360_13996423_14026822_14026918_14038054
59032	chr12	-	1016	12	FSM	ENSMUSG00000021038.18	ENSMUST00000222350.2	1790	12	10	764	10	-764	multi-exon	FALSE	canonical	3	88	junction_1	4.43874749663044	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTCTTTGTCCGTCATCT	NA	False	NA	NA	False	NA	NA	NA	87313017	87296067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
59033	chr5	-	1249	11	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-32	191	intron_retention	FALSE	non_canonical	2	111	junction_2	25.1348363829964	611	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-92	True	NA	NA	NA	24628560	24624182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24624461_24624597_24624841_24625255_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
59034	chr1	-	886	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2535.91209210589	10	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAAATTGAAATGTGTCG	NA	False	NA	NA	False	NA	NA	NA	16174626	16171531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173905_16174588
59036	chr13	-	1688	3	Genic_Genomic	ENSMUSG00000114348.2	novel	653	3	NA	NA	12376	-11566	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAATTAATAAAAATATAT	NA	False	NA	NA	False	NA	NA	NA	97950017	97944235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_97945392_97945649_97945979_97949814
59040	chr5	-	1620	3	NNC	ENSMUSG00000106028.2	novel	489	6	NA	NA	889	864	intron_retention	FALSE	canonical	3	11	junction_1	20.5	32	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGTGACCCGGGTCACA	NA	False	NA	NA	False	NA	NA	NA	109701133	109698893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109700241_109700490_109700560_109700929
59041	chr11	+	771	3	NIC	ENSMUSG00000017716.16	novel	947	4	NA	NA	3	5	combination_of_known_splicesites	FALSE	canonical	3	60	junction_1	950.5	54	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCTGTCTGTCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	117740147	117746563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_117740288_117743488_117743607_117746050
59043	chr5	+	1649	12	FSM	ENSMUSG00000051674.16	ENSMUST00000087181.12	4117	12	16	2452	16	1057	multi-exon	FALSE	canonical	0	0	junction_2	58.0571106684922	2	32	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTCCTCTCCTCCTTA	6023	False	NA	NA	False	NA	NA	NA	73638358	73715685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_73638438_73638550_73638612_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
59044	chr4	+	2103	1	ISM	ENSMUSG00000025743.15	ENSMUST00000070478.4	4973	5	31661	19	7353	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	31	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAAGCTGAAAGATGTC	NA	False	NA	NA	False	NA	NA	NA	130551508	130553611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_130551500_130553600
59047	chr14	+	1674	14	NIC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	-5	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	63.8816398139985	49	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATAGAGGTGGATGTTC	NA	False	NA	NA	False	NA	NA	NA	52122327	52129318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_52122481_52122607_52122762_52122844_52122980_52124267_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
59048	chr7	+	2009	12	NNC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	-5	543	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	138.939727701922	1	95	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAGGTGCATAGCCTCTG	6875	False	NA	NA	False	NA	NA	NA	140711263	140736058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732645_140732802_140732891_140733007_140734265_140734381_140734469_140734616_140734850_140734910_140735246
59049	chr5	-	1280	2	NNC	ENSMUSG00000107142.2	novel	1535	2	NA	NA	-1186	0	intron_retention	FALSE	canonical	3	124	junction_1	0	427	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTTGGTTATGTCTTT	736	False	NA	NA	False	NA	NA	NA	31646478	31643976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31645206_31646427
59050	chr13	-	1311	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	9	0	0	0	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	369	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	NA	False	NA	NA	NA	53083688	52989154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
59052	chr8	-	1134	1	ISM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	10740	0	10740	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43749233	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43748100_43749200
59054	chr2	-	1256	6	NNC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	-144	-124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1051.08439242527	115	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8793	False	NA	NA	False	NA	NA	NA	132094666	132091205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132091616_132091693_132091818_132093163_132093359_132093606_132093679_132093822_132093921_132094309
59055	chr11	+	2864	7	ISM	ENSMUSG00000001901.16	ENSMUST00000001965.14	3368	13	11962	-1040	6362	1040	3prime_fragment	FALSE	canonical	1	2	junction_2	2.11476292340825	29	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACACCTAGGTATCCA	8982	False	NA	NA	False	NA	NA	NA	105910960	105926415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_105911148_105911316_105911570_105914550_105914745_105916619_105916705_105917541_105917699_105918382_105918564_105924608
59057	chr7	-	1875	8	FSM	ENSMUSG00000030701.18	ENSMUST00000107047.10	1926	8	49	2	-1	0	multi-exon	FALSE	canonical	1	1	junction_7	8.07869458034211	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	100311523	100293106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100311125_100311200_100311364
59059	chr15	+	1728	11	ISM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	6	1503	6	0	5prime_fragment	FALSE	canonical	3	173	junction_9	27.9114671774882	16	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTCGTGTTTCTGTG	4389	False	NA	NA	False	NA	NA	NA	79113587	79132163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464
59060	chr10	+	1580	4	FSM	ENSMUSG00000020265.17	ENSMUST00000020501.15	2630	4	143	907	15	2	multi-exon	FALSE	canonical	3	1171	junction_3	110.14031454871	5	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGGCCTATGTTAAACAC	NA	False	NA	NA	False	NA	NA	NA	77442073	77453258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981
59062	chr5	+	1034	7	FSM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	-10	0	-4	0	multi-exon	FALSE	canonical	3	30	junction_5	922.805580222015	185	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGTATTTGGTCAGA	4591	False	NA	NA	False	NA	NA	NA	29940982	29962967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29961231_29961337_29962545
59063	chr6	-	3560	5	FSM	ENSMUSG00000005362.15	ENSMUST00000147087.2	2784	5	-4	-772	0	772	multi-exon	FALSE	canonical	3	193	junction_4	25.0099980007996	21	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTATCCATATATAAGACT	NA	False	NA	NA	False	NA	NA	NA	106777026	106764936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
59064	chr2	+	1270	8	NNC	ENSMUSG00000025817.13	novel	509	6	NA	NA	5378	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	358.231711582983	1	53	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAGCACCACACATGGC	5472	False	NA	NA	False	NA	NA	NA	5858323	5873523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5858428_5859626_5859730_5860790_5860859_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
59065	chr6	+	1204	3	FSM	ENSMUSG00000059689.16	ENSMUST00000136889.8	659	3	-6	-539	-6	-3	multi-exon	FALSE	canonical	3	25	junction_1	15.5	218	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATCAGGTATTTTTCATA	NA	False	NA	NA	False	NA	NA	NA	117818222	117822913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117818359_117820213_117820354_117821985
59066	chr5	+	1764	12	NNC	ENSMUSG00000041939.15	novel	1660	11	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	49.1085826771857	146	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCCTTGGGCCCTGTGGG	NA	False	NA	NA	False	NA	NA	NA	114582363	114598649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114594990_114595095_114596955_114597110_114598103
59068	chr8	-	1517	9	FSM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	71	2771	-22	-14	multi-exon	FALSE	canonical	3	1341	junction_8	171.134997881789	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTTATGTCTCCCTT	NA	False	NA	NA	False	NA	NA	NA	95564915	95549202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
59069	chrX	+	1400	2	Antisense	novelGene_ENSMUSG00000031422.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	70	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGGTTTCTTAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	135633700	135635151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_135634585_135634635
59070	chr7	-	4761	29	NNC	ENSMUSG00000015133.18	novel	7465	34	NA	NA	-12	-3660	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	1.04978131833565	1	90	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTTTGCCACCTTCATG	NA	False	NA	NA	False	NA	NA	NA	66038067	65919597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_65919638_65920474_65920670_65922564_65922843_65924523_65924722_65928270_65928438_65928941_65929192_65931375_65931516_65931921_65932086_65934982_65935155_65937187_65937465_65938831_65938992_65939360_65939471_65940488_65940649_65942004_65942170_65944541_65944757_65945160_65945274_65945868_65945999_65950609_65950687_65952402_65952516_65955140_65955279_65956592_65956757_65956852_65956981_65958408_65958636_65980416_65980566_65982026_65982207_65982862_65983035_65992509_65992674_66031199_66031415_66037967
59071	chr17	+	1796	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	16	-628	16	628	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	2820	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTGGATTTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	87332993	87343866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
59073	chr11	-	1526	1	ISM	ENSMUSG00000020802.9	ENSMUST00000134102.2	3550	9	4730	22	4730	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	55	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTTTTTTTTAACTTG	3694	False	NA	NA	False	NA	NA	NA	116430113	116428587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116428600_116430100
59074	chr8	-	2364	6	NNC	ENSMUSG00000031601.17	novel	2461	6	NA	NA	24	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.506267113405	1	96	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATGTTTTCCTATATG	NA	False	NA	NA	False	NA	NA	NA	40964321	40945597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947089_40952366_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964130
59075	chr6	-	2075	8	ISM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	15357	0	8318	0	3prime_fragment	FALSE	canonical	3	239	junction_4	22.3652427134751	1	96	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120319033	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933
59076	chr15	-	3262	1	NIC	ENSMUSG00000022615.8	novel	2037	11	NA	NA	199	-1648	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACGGCCCTGCGCTCAGC	NA	False	NA	NA	False	NA	NA	NA	89261043	89257781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89257800_89261000
59077	chr11	+	1204	6	Antisense	novelGene_ENSMUSG00000017176.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	14	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCATGTGCCTCTTTTAG	142	False	NA	NA	False	NA	NA	NA	100320189	100328875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100320774_100321900_100322103_100323742_100323902_100325515_100325612_100326979_100327065_100328797
59079	chr9	+	1185	9	NNC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	334.827100904332	2	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	NA	False	NA	NA	NA	20914235	20920127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917589_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
59080	chr8	-	1321	10	FSM	ENSMUSG00000031816.16	ENSMUST00000133037.8	1060	10	26	-287	13	-7	multi-exon	FALSE	canonical	3	29	junction_2	18.6494629717802	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTAAGCTGCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	121835105	121824302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
59081	chr13	+	1157	8	Antisense	novelGene_ENSMUSG00000021484.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCACCGCTGACCCCAG	NA	False	NA	NA	False	NA	NA	NA	55494552	55510344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_55494851_55496127_55496252_55498971_55499080_55499188_55499355_55499523_55499603_55500757_55500877_55509933_55510055_55510202
59083	chr3	+	1607	5	Antisense	novelGene_ENSMUSG00000027708.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGGCGGCGCCTCTCA	NA	False	NA	NA	False	NA	NA	NA	35962400	35986995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_35963428_35970367_35970500_35973149_35973319_35975119_35975337_35986933
59084	chr18	+	1718	2	ISM	ENSMUSG00000024617.17	ENSMUST00000039904.7	1734	6	20727	-569	20727	-141	3prime_fragment	FALSE	canonical	2	2	junction_1	0	10	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTCCCTCCCTTTCTCTT	111	False	NA	NA	False	NA	NA	NA	61117398	61119338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_61117627_61117848
59085	chr11	+	1393	10	ISM	ENSMUSG00000050106.19	ENSMUST00000106334.9	2644	16	12	2786	12	-2289	5prime_fragment	FALSE	canonical	2	4	junction_1	4.91658819774169	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCGACTACCAGGTGGC	7644	False	NA	NA	False	NA	NA	NA	117673152	117681150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_117673235_117673875_117674097_117674220_117674370_117674596_117674747_117674935_117675022_117675630_117675768_117675945_117676094_117677212_117677384_117677554_117677695_117681041
59087	chr11	-	1204	7	NNC	ENSMUSG00000018761.15	novel	1321	7	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.139144290076	3	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTAATTGTACAAAATTG	6816	False	NA	NA	False	NA	NA	NA	69553413	69547539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69548127_69548262_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
59088	chr17	+	1174	5	FSM	ENSMUSG00000002308.17	ENSMUST00000002379.15	2209	5	14	1021	2	0	multi-exon	FALSE	canonical	3	326	junction_3	13.0072095393286	1152	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7007	False	NA	NA	False	NA	NA	NA	34062078	34067727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34062266_34064989_34065116_34066468_34066700_34066990_34067153_34067259
59089	chr6	+	570	1	FSM	ENSMUSG00000081669.2	ENSMUST00000119728.2	528	1	175	-217	175	217	mono-exon	FALSE	NA	NA	NA	NA	NA	24	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85053348	85053918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85053300_85053900
59090	chr14	+	2297	11	FSM	ENSMUSG00000021822.4	ENSMUST00000022368.4	2342	11	44	1	-20	-1	multi-exon	FALSE	canonical	0	0	junction_1	0.66332495807108	36	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGATTCTGGTTTCTCCAT	NA	False	NA	NA	False	NA	NA	NA	20886771	20893452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20886803_20887116_20887204_20887677_20887709_20887845_20887954_20888580_20888756_20889163_20889256_20889399_20889623_20889842_20889992_20890565_20890707_20891013_20891163_20892341
59091	chr15	-	1668	15	NNC	ENSMUSG00000036678.9	novel	1814	15	NA	NA	-15	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	245.469365061454	1	76	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTACCAGGATGTAACTC	NA	False	NA	NA	False	NA	NA	NA	102259145	102246692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102246941_102247089_102247161_102247251_102247345_102247749_102247843_102247968_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254964_102255112_102255201_102255470_102255527_102258387_102258516_102258934
59092	chr14	-	1023	1	ISM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	49620	3603	14903	1931	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTCAGTAAAGCCTGCA	NA	False	NA	NA	False	NA	NA	NA	78062746	78061723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_78061700_78062700
59094	chr16	+	3314	1	Antisense	novelGene_ENSMUSG00000058240.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAGAGAGCCCGCCTTC	NA	False	NA	NA	False	NA	NA	NA	91522188	91525502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_91522200_91525500
59095	chr13	-	771	4	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-40	-473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.451709921107	221	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314377	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311579_34312896_34312966_34313228_34313338_34314159
59096	chr4	+	1803	7	NIC	ENSMUSG00000066026.15	novel	1349	7	NA	NA	-4	-9	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	64.9837586546738	7	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTTTCGCAGCTTCCTT	5692	False	NA	NA	False	NA	NA	NA	144619392	144654200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_144619946_144620154_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
59097	chr5	-	1413	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	-47	10	-47	-7	multi-exon	FALSE	canonical	3	112	junction_1	0	532	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGATTACATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	3943980	3940590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_3941898_3943874
59098	chr11	-	3133	20	ISM	ENSMUSG00000041592.17	ENSMUST00000041627.14	11287	45	232859	4331	-7140	-4331	3prime_fragment	FALSE	canonical	1	1	junction_8	2.27597350636207	17	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAGAAAACCCCACCAAGA	NA	False	NA	NA	False	NA	NA	NA	113724185	113671530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_113671970_113682200_113682328_113684125_113684265_113684548_113684690_113685748_113685914_113690968_113691095_113693950_113694113_113697092_113697231_113701154_113701342_113712173_113712290_113712401_113712504_113714196_113714254_113715840_113715977_113717267_113717339_113717852_113717957_113719183_113719386_113720723_113720919_113721605_113721705_113723079_113723270_113723948
59100	chr2	-	2762	18	NNC	ENSMUSG00000033808.17	novel	2897	20	NA	NA	16	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	185.480914247728	1	179	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	120234534	120185792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187032_120190521_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202103_120204959_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216269_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120234385
59101	chrX	+	969	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	88	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCTTGATTCCAGGACCA	NA	False	NA	NA	False	NA	NA	NA	13068897	13070013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069189_13069335
59102	chr6	+	795	3	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	0	-15	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGCAAGCTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	148256153	148257081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_148256543_148256600_148256737_148256811
59103	chr4	-	2375	2	FSM	ENSMUSG00000050854.10	ENSMUST00000150044.2	717	2	49	-1707	49	631	multi-exon	FALSE	canonical	3	10	junction_1	0	35	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTACACAAAGCTAAAGGA	9140	False	NA	NA	False	NA	NA	NA	118400110	118397506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_118399569_118399797
59104	chrX	+	766	5	FSM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	27	6	-15	-6	multi-exon	FALSE	canonical	3	455	junction_2	146.787899705664	152	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAATCTGGATTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	67805471	67848167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
59106	chr17	-	1169	7	NNC	ENSMUSG00000039615.10	novel	1320	7	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_6	564.894016608425	3	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6791	False	NA	NA	False	NA	NA	NA	26051889	26049609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051162_26051665
59107	chr14	+	1614	14	FSM	ENSMUSG00000071547.5	ENSMUST00000227096.2	1848	14	232	2	-66	1	multi-exon	FALSE	canonical	3	528	junction_7	36.4029064448587	156	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCTGCTTCATTCCAG	NA	False	NA	NA	False	NA	NA	NA	30853241	30861079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30853334_30856695_30856881_30856986_30857062_30857294_30857351_30857450_30857545_30857642_30857772_30857874_30857936_30858021_30858125_30858224_30858327_30858552_30858635_30860080_30860168_30860288_30860430_30860565_30860631_30860737
59108	chr8	-	1132	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	-63	-1	-63	1	multi-exon	FALSE	canonical	3	669	junction_1	47.4572175754121	2476	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGAAGTAATTTTAGT	NA	False	NA	NA	False	NA	NA	NA	118528745	118518382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
59109	chr11	+	1803	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	5	194	5	-194	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	3	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCTGGAGAACTGTTTT	2476	False	NA	NA	False	NA	NA	NA	17161922	17183602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
59110	chr2	-	1445	7	FSM	ENSMUSG00000026727.11	ENSMUST00000162223.8	1505	7	24	36	-1	-36	multi-exon	FALSE	canonical	3	310	junction_3	21.3911975666005	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAAACAGAAACAATAAA	7149	False	NA	NA	False	NA	NA	NA	13276120	13220846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
59111	chr1	+	3114	19	NNC	ENSMUSG00000026175.13	novel	658	3	NA	NA	-3608	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.8910248513906	11	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAATATGAGGTTAATAAAG	NA	False	NA	NA	False	NA	NA	NA	74454603	74474662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74454797_74455124_74455200_74457518_74457716_74458727_74458837_74458953_74459065_74460411_74460615_74460719_74460799_74460937_74461037_74462085_74462240_74462833_74462935_74463021_74463160_74464695_74464855_74465710_74465891_74466398_74466545_74466637_74466783_74467225_74467415_74469775_74469845_74471449_74471591_74474036
59112	chr17	-	987	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234696.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	923.958693160396	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	NA	False	NA	NA	NA	80514732	80508738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80509032_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
59113	chr10	-	1173	8	NNC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	-4	13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	780.112524588862	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGCAGATGTCACTGTGG	NA	False	NA	NA	False	NA	NA	NA	69188744	69174140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_69174427_69176310_69176453_69176544_69176709_69178382_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
59114	chrX	+	1957	9	NNC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-502	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	259.354848614789	1	107	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCTCCCAATAAAACTAT	7602	False	NA	NA	False	NA	NA	NA	73350257	73355438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354060_73354418
59116	chr14	-	3481	28	NNC	ENSMUSG00000034731.12	novel	3308	28	NA	NA	1121	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_27	9.03050765943452	11	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCTGCCTGTTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	78888063	78807439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_78807598_78813326_78813458_78814888_78814998_78816128_78816249_78818918_78819012_78821814_78821921_78823032_78823197_78824559_78824695_78824962_78825077_78827313_78827422_78832586_78832684_78832816_78832928_78834084_78834203_78836447_78836580_78840465_78840574_78841716_78841991_78844340_78844441_78846948_78847035_78850294_78850380_78853666_78853807_78853918_78854028_78855962_78856123_78857211_78857315_78861816_78861943_78862245_78862353_78865126_78865260_78865500_78865606_78887914
59118	chr11	+	1670	2	Intergenic	novelGene_2401	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	164	103	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAATAAATTTGACTTCA	NA	False	NA	NA	False	NA	NA	NA	70411605	70413751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_70412366_70412841
59119	chrX	-	2835	1	FSM	ENSMUSG00000055733.7	ENSMUST00000079490.6	2837	1	3	-1	3	1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGACTTACCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	121307095	121304260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_121304300_121307100
59121	chr16	-	2391	10	FSM	ENSMUSG00000022537.19	ENSMUST00000140402.8	2405	10	41	-27	2	27	multi-exon	FALSE	canonical	3	16	junction_1	4.30618275001691	40	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGCTTAAGTCAGCTCT	NA	False	NA	NA	False	NA	NA	NA	30369355	30332481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_30333641_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
59124	chr3	-	1057	8	Fusion	ENSMUSG00000089664.3_ENSMUSG00000068762.12	novel	1153	8	NA	NA	29	0	multi-exon	FALSE	canonical	2	3	junction_3	18.4921384288965	50	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCCTGTCGTATT	8266	False	NA	NA	False	NA	NA	NA	107860408	107846162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_107846633_107848308_107848420_107848504_107848601_107849648_107849731_107850017_107850083_107850560_107850637_107858112_107858224_107860362
59125	chr17	+	2255	11	NIC	ENSMUSG00000059714.14	novel	1825	13	NA	NA	-15	-16	intron_retention	FALSE	canonical	3	176	junction_8	10.356157588604	5	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGAGCCTGGTTATCTA	NA	False	NA	NA	False	NA	NA	NA	36134258	36143667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36141684_36141834_36142000_36143398
59126	chr19	-	616	1	NIC	ENSMUSG00000016495.13	novel	1020	6	NA	NA	14	-390	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACAGGAGACACGCCTG	NA	False	NA	NA	False	NA	NA	NA	29339259	29338643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_29338600_29339300
59127	chr15	+	1733	1	NIC	ENSMUSG00000035828.12	novel	2427	6	NA	NA	-929	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	323	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATAACTTCTGTTTATTGG	NA	False	NA	NA	False	NA	NA	NA	88748193	88749926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_88748200_88749900
59128	chr18	-	1021	1	ISM	ENSMUSG00000056153.16	ENSMUST00000070116.12	6036	3	28124	9	21139	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	29	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATAACATCTGCCTTGTC	9983	False	NA	NA	False	NA	NA	NA	88884322	88883301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_88883300_88884300
59129	chr13	+	1011	7	ISM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	2040	3	767	-3	3prime_fragment	FALSE	canonical	3	544	junction_4	89.0513272719104	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATCTTGACTTTATAG	NA	False	NA	NA	False	NA	NA	NA	100263399	100274195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
59130	chr11	-	1327	1	Antisense	novelGene_ENSMUSG00000046010.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTCCGAGGCGTGATAGC	NA	False	NA	NA	False	NA	NA	NA	82656497	82655170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_82655200_82656500
59132	chr6	-	842	5	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	31	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2594.1800727783	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTATAACAGTGTCTCGG	9997	False	NA	NA	False	NA	NA	NA	125471723	125437242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437606_125440631_125440723_125441352_125441451_125449371_125449475_125471536
59133	chr18	+	1902	8	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	14	-658	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.922250498354	4	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTGTGACTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	52598820	52624345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_52598862_52608689_52608758_52609371_52609445_52616704_52616777_52620606_52620666_52621322_52622044_52623089_52623128_52623515
59134	chr16	+	796	1	Intergenic	novelGene_3569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	735	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGACAAACAGGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	3163701	3164497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_3163700_3164500
59135	chr15	+	1558	4	NIC	ENSMUSG00000022151.17	novel	1671	5	NA	NA	-14	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	59.1739432145227	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCAAAAAAGTTTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	5215026	5247807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_5215054_5219062_5219285_5241479_5241612_5246630
59137	chr4	+	1153	8	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	13853	2	-7	1	3prime_fragment	FALSE	canonical	3	103	junction_1	10.7532624380336	324	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCTGGTGGTCTCGTCT	NA	False	NA	NA	False	NA	NA	NA	133809615	133819813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
59138	chr12	-	375	1	NIC	ENSMUSG00000021189.12	novel	5363	11	NA	NA	-29	-24854	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCACCTGGCGGACCCTT	NA	False	NA	NA	False	NA	NA	NA	101924436	101924061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_101924100_101924400
59139	chr11	+	687	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	3	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5640	328	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75656093
59140	chr1	-	395	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	292	-6	292	6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	24654354	24653959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24654000_24654400
59141	chr5	+	991	1	NIC	ENSMUSG00000016833.15	novel	638	6	NA	NA	-1989	-1550	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTATTAACTTTGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	100949786	100950777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_100949800_100950800
59142	chr5	+	842	5	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	162	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9700.33433702159	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697843	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115699022_115699435_115699578_115700484_115700626_115701341
59143	chr7	-	2051	10	NIC	ENSMUSG00000055809.8	novel	2224	12	NA	NA	20	-479	intron_retention	FALSE	canonical	2	8	junction_7	7.54901677842801	1	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCGACCTGGCCTCTCC	NA	False	NA	NA	False	NA	NA	NA	4535432	4526410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4530624_4530951_4531110_4533772_4533867_4534736_4534880_4535185_4535275_4535376
59144	chr4	+	760	6	NNC	ENSMUSG00000028837.9	novel	859	6	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1405.39312649522	17	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5417	False	NA	NA	False	NA	NA	NA	126571459	126603507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126571639_126577914_126578013_126580858_126580893_126599850_126600014_126601346_126601397_126603271
59145	chrX	+	605	1	Antisense	novelGene_ENSMUSG00000036782.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGCGAGTTGGCAACCTT	NA	False	NA	NA	False	NA	NA	NA	23085527	23086132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_23085500_23086100
59147	chr17	+	1775	13	FSM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	-34	7	-32	-6	multi-exon	FALSE	canonical	3	52	junction_12	6.07533721057706	95	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTCTCCCTCCTGCACT	3899	False	NA	NA	False	NA	NA	NA	56293476	56303874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
59148	chr1	-	469	1	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	54640	1958	4204	-1958	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTATTTCCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	180917129	180916660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_180916700_180917100
59149	chr19	-	1858	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	55	0	-12	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	654	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1556	False	NA	NA	False	NA	NA	NA	5157045	5149232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
59150	chr10	+	2676	1	NIC	ENSMUSG00000019831.15	novel	2609	9	NA	NA	52055	-12	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAAGGCTCTTGGGTG	NA	False	NA	NA	False	NA	NA	NA	40811877	40814553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_40811900_40814600
59151	chr11	-	701	3	FSM	ENSMUSG00000059534.9	ENSMUST00000151559.2	510	3	-17	-174	-9	172	multi-exon	FALSE	canonical	3	506	junction_1	31	1560	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCCCAGTCTTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	4654351	4651800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_4652221_4653903_4653990_4654156
59152	chr11	-	2212	8	FSM	ENSMUSG00000000320.11	ENSMUST00000108574.3	2314	8	6	96	6	-96	multi-exon	FALSE	canonical	3	24	junction_3	2.55550625999976	59	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTTTATTTACTGCAT	7420	False	NA	NA	False	NA	NA	NA	70146161	70139884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
59154	chr8	+	1971	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	78	35	0	-35	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	76	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACAGTTATATTAAAATCC	NA	False	NA	NA	False	NA	NA	NA	72993939	73011194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
59155	chr14	+	1705	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73723	-11	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	49.2250143810678	21	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATCTCCAACTCTTCACT	NA	False	NA	NA	False	NA	NA	NA	43169947	43251470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_43170061_43170454_43170526_43173424_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
59158	chr2	-	2190	12	ISM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	756	0	737	0	3prime_fragment	FALSE	canonical	2	11	junction_5	2.63165724111457	32	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCAGTGTGCCCAATGC	NA	False	NA	NA	False	NA	NA	NA	91466003	91455664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515
59159	chr13	-	941	1	Antisense	novelGene_ENSMUSG00000021483.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGGTAGCAAGAAATCC	NA	False	NA	NA	False	NA	NA	NA	64587535	64586594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_64586600_64587500
59161	chr16	+	1540	4	ISM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	18808	149863	18808	-80603	internal_fragment	FALSE	canonical	3	387	junction_2	26.8700576850888	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTTTAAACCATCATGAT	NA	False	NA	NA	False	NA	NA	NA	48270407	48301400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_48270472_48272794_48272955_48281042_48281149_48300190
59162	chr1	+	1875	11	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	107	10	intron_retention	FALSE	canonical	3	82	junction_1	63.0143634419963	21	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTGCGCCTGGACTTGG	NA	False	NA	NA	False	NA	NA	NA	75412863	75419833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418922_75419087_75419257_75419544
59163	chr2	+	1237	12	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	-8	129	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	412.298275243294	1	53	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	4156	False	NA	NA	False	NA	NA	NA	127429330	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445758
59164	chr14	-	910	8	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	6	-575	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1149.68874226098	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTAAAAGGCTTGTTTGT	1694	False	NA	NA	False	NA	NA	NA	19873886	19861993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867119_19867216_19869974_19870045_19872683_19872759_19873736
59165	chr16	-	1155	6	NNC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	2	-7	intron_retention	FALSE	non_canonical	0	0	junction_4	120.610778954453	1	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTGAGCTTGTTGTATG	NA	False	NA	NA	False	NA	NA	NA	16943002	16931269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936202_16938852_16939416_16942853
59166	chr7	-	2113	17	NNC	ENSMUSG00000030720.17	novel	2487	17	NA	NA	11	0	intron_retention	FALSE	canonical	1	2	junction_16	64.4924595883116	1	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	126183441	126171257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180571_126180629_126180817_126180915_126181935_126182015_126182171_126182273_126182474_126182797_126183345
59167	chr19	-	2765	2	FSM	ENSMUSG00000067279.4	ENSMUST00000087321.4	2725	2	-17	-23	-17	23	multi-exon	FALSE	canonical	3	11	junction_1	0	24	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCATAACTGGTTAGAT	NA	False	NA	NA	False	NA	NA	NA	36714070	36709107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_36711755_36713952
59168	chr9	+	880	6	FSM	ENSMUSG00000033543.18	ENSMUST00000116552.8	888	6	5	3	0	-2	multi-exon	FALSE	canonical	3	20	junction_3	405.059798054559	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTGTGAGTAATACTTG	NA	False	NA	NA	False	NA	NA	NA	69919852	69930017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69925961_69926101_69926670_69926798_69929718
59169	chr8	+	1204	9	NIC	ENSMUSG00000055681.15	novel	1300	10	NA	NA	46	1	combination_of_known_junctions	FALSE	canonical	2	8	junction_4	445.601401899725	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGATACCCACCAGGCG	498	False	NA	NA	False	NA	NA	NA	70755213	70765644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
59170	chr17	+	1459	8	NNC	ENSMUSG00000035473.11	novel	2314	7	NA	NA	-17	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	48.9251823643791	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGATGACTCTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	80434882	80492526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412_80491591_80492458
59171	chr13	+	908	6	ISM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	2964	-3	-59	3	3prime_fragment	FALSE	canonical	3	544	junction_3	96.849574082698	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGACTTTATAGATATTT	NA	False	NA	NA	False	NA	NA	NA	100264323	100274201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
59173	chr9	-	2306	1	ISM	ENSMUSG00000036986.17	ENSMUST00000085673.11	4481	9	29399	6	9740	4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	132	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAACATTCTGATTGCAA	NA	False	NA	NA	False	NA	NA	NA	58127670	58125364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_58125400_58127700
59174	chr10	-	1103	1	NIC	ENSMUSG00000000296.9	novel	1308	7	NA	NA	112315	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGATGGCTGGATCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31209478	31208375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_31208400_31209500
59176	chr4	+	1990	6	NNC	ENSMUSG00000028480.15	novel	2320	5	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	106.640705173963	653	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	-27	True	NA	NA	False	NA	NA	NA	43957679	43979118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462_43978518_43978568
59177	chr11	-	975	7	NNC	ENSMUSG00000018446.9	novel	1175	6	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1954.26991198475	1281	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATCTCCAGGAAAGTTGA	NA	False	NA	NA	False	NA	NA	NA	70873833	70868681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873550_70873610_70873770
59179	chr17	+	3568	1	ISM	ENSMUSG00000037104.10	ENSMUST00000041369.8	4648	3	26380	213	26201	-213	mono-exon	FALSE	NA	NA	NA	NA	NA	28	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCCCAGCATGGACGTGC	NA	False	NA	NA	False	NA	NA	NA	87441486	87445054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_87441500_87445100
59180	chr10	+	1405	10	Genic_Genomic	ENSMUSG00000020070.19	novel	4502	19	NA	NA	13171	6615	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGCTCCCCTCAACCGTC	NA	False	NA	NA	False	NA	NA	NA	62851206	62859604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_62851492_62851578_62851674_62851858_62851955_62852185_62852322_62853000_62853116_62853301_62853392_62853865_62854002_62854540_62854673_62855165_62855300_62859418
59181	chr12	+	1477	11	NNC	ENSMUSG00000021177.17	novel	3945	14	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	223.954013136626	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTACTGTGAGACCTTTAA	NA	False	NA	NA	False	NA	NA	NA	99850776	99885564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864632_99872294_99872311_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99885326
59182	chr7	-	1340	12	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	39	-3	combination_of_known_junctions	FALSE	canonical	3	14	junction_11	47.3902385596844	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGGTCTATATTGTGT	NA	False	NA	NA	False	NA	NA	NA	140367711	140357144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140367648
59184	chr11	-	1475	1	Intergenic	novelGene_2539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAAATTTTTCTCGGAT	NA	False	NA	NA	False	NA	NA	NA	119288070	119286595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_119286600_119288100
59186	chr2	+	1405	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	-38	105	-7	-105	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	264	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTATTTTATCTTTG	4787	False	NA	NA	False	NA	NA	NA	10085396	10097512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
59187	chrX	-	1209	8	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	171	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	874.595323330646	2	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACCCTGTTCCACATGC	NA	False	NA	NA	False	NA	NA	NA	72974176	72965743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72970268_72971412_72971474_72973286_72973460_72973610_72973687_72973792_72973869_72974013
59188	chr4	+	1224	3	NNC	ENSMUSG00000078521.3	novel	1275	3	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	224	845	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTTGGTGTCGTGCTT	NA	False	NA	NA	False	NA	NA	NA	134238313	134251236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_134238481_134248782_134248913_134250309
59189	chr8	+	1580	9	NIC	ENSMUSG00000118664.1	novel	2747	10	NA	NA	-16	183	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	53.444919075624	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTTGTTATTCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	39473045	39618338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39617866
59190	chr17	+	1227	7	NIC	ENSMUSG00000073423.11	novel	1211	7	NA	NA	2	-9	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	176.614143135694	932	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTAAAATGACTGGTACC	4919	False	NA	NA	False	NA	NA	NA	33848065	33850681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_33848191_33848595_33848673_33848743_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
59191	chr4	+	3214	13	NNC	ENSMUSG00000028759.14	novel	3311	13	NA	NA	40	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	44.6355613085949	1	198	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTTTAAAAGCTGCTGA	4613	False	NA	NA	False	NA	NA	NA	137943985	137970445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137944052_137948836_137949035_137949406_137949500_137950800_137950961_137953199_137953361_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968763
59192	chr10	-	2267	12	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_11	27.9766726912982	93	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTTGGTTTTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	33827215	33795145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33826478_33826614_33827126
59193	chr3	-	1021	4	ISM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	109	666	109	-666	5prime_fragment	FALSE	canonical	3	9125	junction_1	860.871780361177	4	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTTCTTGCAGGATTCCA	NA	False	NA	NA	False	NA	NA	NA	86049900	86045912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_86046556_86048545_86048734_86049004_86049109_86049814
59194	chr15	+	1435	1	Antisense	novelGene_ENSMUSG00000022483.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTCATCGATAGGTCTGG	NA	False	NA	NA	False	NA	NA	NA	97891094	97892529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_97891100_97892500
59195	chr3	+	1636	5	NNC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	3	754	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	51.3322510708424	1	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCCCCAAGATCAACACATA	NA	False	NA	NA	False	NA	NA	NA	135053809	135078494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063383_135077605
59196	chr5	-	2776	18	ISM	ENSMUSG00000072889.10	ENSMUST00000087216.12	3712	23	18815	7	-16210	-4	3prime_fragment	FALSE	canonical	3	109	junction_5	10.8168137733629	51	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAAATTTGTGATAAAGG	NA	False	NA	NA	False	NA	NA	NA	72698212	72670650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_72671675_72673554_72673609_72674368_72674456_72675537_72675643_72679490_72679561_72680851_72681019_72681429_72681571_72681989_72682012_72685501_72685594_72686354_72686515_72686726_72686848_72690387_72690479_72694708_72694832_72695492_72695618_72696948_72697064_72697636_72697738_72697834_72697997_72698196
59197	chr17	-	1785	1	Genic_Genomic	ENSMUSG00000045817.9	novel	NA	NA	NA	NA	2235	3	mono-exon	FALSE	NA	NA	NA	NA	NA	115	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTCTTTGAGTAATGGT	NA	False	NA	NA	False	NA	NA	NA	84493140	84491355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_84491400_84493100
59201	chr2	+	1347	8	NNC	ENSMUSG00000027395.16	novel	2769	13	NA	NA	-4	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	107.755960107901	13	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAAGCCATATGTGTG	NA	False	NA	NA	False	NA	NA	NA	128942910	128968503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952009_128968287
59202	chr15	+	1573	1	FSM	ENSMUSG00000022556.12	ENSMUST00000228720.2	560	1	-1165	152	-1165	-152	mono-exon	FALSE	NA	NA	NA	NA	NA	5	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGGCCTCTGTCCAGCAG	526	False	NA	NA	False	NA	NA	NA	76381043	76382616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76381000_76382600
59203	chr5	-	499	1	NIC	ENSMUSG00000029623.15	novel	2353	6	NA	NA	-281	99	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGCATCACCTCTTCTGT	NA	False	NA	-77	True	NA	NA	NA	145073787	145073288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_145073300_145073800
59204	chr2	-	762	2	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1759	-2	multi-exon	FALSE	canonical	3	735	junction_1	0	2046	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTCCGGGCTGTGCTGGTT	910	False	NA	NA	False	NA	NA	NA	162931534	162928955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_162929642_162931458
59205	chr14	+	1765	9	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	559.337317166484	1	81	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAAAGCTTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	19801354	19861842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801442_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
59206	chr9	+	993	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	24	-186	24	-11	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTCCCCAACTTTTTG	NA	False	NA	NA	False	NA	NA	NA	14411966	14421847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
59207	chr19	-	1844	6	NNC	ENSMUSG00000024970.6	novel	3152	6	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	129.803543865335	158	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTGGGCTATCATT	NA	False	NA	NA	False	NA	NA	NA	7360271	7335050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7351811_7351882_7352216_7360036
59208	chr13	-	1051	1	Intergenic	novelGene_1351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAAGACGCTCTTCCGG	9743	False	NA	NA	False	NA	NA	NA	41416260	41415209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_41415200_41416300
59209	chr17	-	2782	15	NNC	ENSMUSG00000038838.16	novel	4425	29	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	58.0362307669326	52	37	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGGTTAGCATTGAAAGA	1802	False	NA	NA	False	NA	NA	NA	35978443	35966547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968170_35973923_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
59210	chr9	+	1184	9	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-8	-6	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	335.339916167163	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGACTTGAAAATGAGCT	NA	False	NA	NA	False	NA	NA	NA	20914229	20920121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918623_20918837_20918926_20919037_20919118_20919196_20919789
59211	chr8	-	1430	11	NNC	ENSMUSG00000031816.16	novel	1366	10	NA	NA	0	24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	29.8504606329618	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGTGCTGAAGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	121835049	121824267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121834729_121834860_121835026
59212	chr16	-	1713	11	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-145	-20	combination_of_known_splicesites	FALSE	canonical	3	12	junction_10	36.3512035564161	11	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAACAGACTTTTATATG	NA	False	NA	NA	False	NA	NA	NA	93401096	93380370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400861
59214	chr1	-	1004	8	NNC	ENSMUSG00000055067.16	novel	3210	8	NA	NA	18324	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	127.340776930988	3	4	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCGACTTGGCTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	179058081	178784814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_178785128_178799752_178799862_178871301_178871477_178877855_178877944_178913888_178914000_178920430_178920534_178921899_178921968_179058044
59215	chr18	-	1461	6	NNC	ENSMUSG00000033022.9	novel	1595	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	72.2811178662865	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACATTGCCTTTTTGAT	2617	False	NA	NA	False	NA	NA	NA	46861422	46846271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_46846540_46846621_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
59216	chr17	-	1399	5	NIC	ENSMUSG00000073406.11	novel	1105	6	NA	NA	-25	1	intron_retention	FALSE	canonical	3	9	junction_4	212.926043498676	1066	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTATGTTTCCTGCATT	NA	False	NA	NA	False	NA	NA	NA	36395140	36391005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394832_36395051
59218	chrX	-	1677	9	NNC	ENSMUSG00000016534.16	novel	1769	9	NA	NA	-8	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	328.26551753116	1	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTGCTTGACCACCGG	NA	False	NA	NA	False	NA	NA	NA	37545299	37493958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37494449_37513183_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
59219	chrX	+	1758	6	Intergenic	novelGene_3995	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	22.4641937313584	80	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGCAGGCTAGCCTCAA	9258	False	NA	NA	False	NA	NA	NA	100739441	100749335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_100739530_100743172_100743346_100744532_100744567_100747004_100747088_100747884_100748564_100748634
59220	chr8	+	3396	1	ISM	ENSMUSG00000031540.15	ENSMUST00000238975.2	9191	18	80324	5	26073	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	69	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGATGTCTGTCTTGCCTG	NA	False	NA	NA	False	NA	NA	NA	23429874	23433270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_23429900_23433300
59221	chr1	-	1109	6	NIC	ENSMUSG00000026049.12	novel	935	7	NA	NA	4	-8	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	156.042814637522	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTACAATGGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	44141579	44125783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141487
59223	chr16	+	690	2	ISM	ENSMUSG00000003235.14	ENSMUST00000148714.2	821	5	1682	-1	1682	1	intron_retention	FALSE	canonical	3	3299	junction_1	0	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTTTGTACTTGTTAATA	NA	False	NA	NA	False	NA	NA	NA	20326829	20328074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20326904_20327458
59224	chr11	+	3220	2	NNC	ENSMUSG00000013483.15	novel	3341	16	NA	NA	19507	2348	intron_retention	FALSE	non_canonical	0	0	junction_1	0	11	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCTGTGGGTGCTCTGGA	5368	False	NA	NA	False	NA	NA	NA	119234479	119238549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119237668_119238517
59225	chr11	+	929	7	Antisense	novelGene_ENSMUSG00000005043.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTAAGCGGTTCCGGCTCGT	9438	False	NA	NA	False	NA	NA	NA	119238549	119246325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_119238717_119240364_119240446_119240800_119240964_119241230_119241378_119241748_119241858_119243473_119243633_119246222
59226	chr3	+	931	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6196.32425313589	1	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570905_137570954_137571280_137571395_137571771_137571896_137572146
59227	chr5	-	1611	1	Intergenic	novelGene_696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCCCTCGTCCTCTCCC	7673	False	NA	NA	False	NA	NA	NA	33650241	33648630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_33648600_33650200
59228	chr1	-	817	6	Antisense	novelGene_ENSMUSG00000026020.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAAAGTGCTTTTTCTGC	NA	False	NA	NA	False	NA	NA	NA	59750666	59744824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59744914_59745789_59745926_59746160_59746222_59748159_59748293_59749650_59749812_59750429
59230	chr11	-	1151	9	Intergenic	novelGene_2427	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGCTGCAAGCAAGCACACA	9063	False	NA	NA	False	NA	NA	NA	83293562	83241807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_83241995_83255617_83255663_83256472_83256619_83258707_83258852_83260475_83260603_83280521_83280612_83281518_83281605_83288576_83288734_83293393
59231	chr10	+	1668	13	FSM	ENSMUSG00000000730.14	ENSMUST00000000746.12	1676	13	0	8	0	-1	multi-exon	FALSE	canonical	2	8	junction_8	3.51484945149386	121	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGTAGTGTTCTGGTGT	5591	False	NA	NA	False	NA	NA	NA	77885675	77899448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77885746_77885849_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
59233	chr5	-	1439	2	NNC	ENSMUSG00000040429.7	novel	2413	2	NA	NA	924	-7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	486	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGATTACATTTATTTT	209	False	NA	NA	False	NA	NA	NA	3942972	3940590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_3941898_3942840
59234	chr4	+	1959	6	NNC	ENSMUSG00000059482.16	novel	2053	6	NA	NA	29	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	54.3485050392373	2	46	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTCTGTGCAATTATATA	24	True	NA	NA	False	NA	NA	NA	10874596	10899428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897963
59235	chr1	+	1578	9	NNC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	140.425914631168	1	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	8201	False	NA	NA	False	NA	NA	NA	134333748	134339474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338281_134338619
59236	chr17	+	1146	7	ISM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	14137	17	459	-6	3prime_fragment	FALSE	canonical	3	1238	junction_2	81.3649187303718	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATACTTGGTTCTCTAGT	NA	False	NA	NA	False	NA	NA	NA	21179709	21186161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
59237	chr2	-	2717	9	ISM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	59	89626	-22	1426	5prime_fragment	FALSE	canonical	3	175	junction_3	21.511624764299	4	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTATGCCCAAAGTAGAATG	NA	False	NA	NA	False	NA	NA	NA	105734850	105620997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
59238	chr10	+	2278	1	ISM	ENSMUSG00000038481.14	ENSMUST00000044672.11	5807	13	131030	1203	130812	470	mono-exon	FALSE	NA	NA	NA	NA	NA	18	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGATTGACGAATTGAGTT	6837	False	NA	NA	False	NA	NA	NA	40356333	40358611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_40356300_40358600
59239	chr10	+	790	1	ISM	ENSMUSG00000038481.14	ENSMUST00000044672.11	5807	13	133713	8	133495	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGGTTTCTGCGTGGG	9520	False	NA	NA	False	NA	NA	NA	40359016	40359806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_40359000_40359800
59241	chr1	+	985	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	28	794	3	-2	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTCTCATGCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	87141663	87155784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
59242	chr9	-	2123	11	NNC	ENSMUSG00000053289.9	novel	3128	18	NA	NA	14108	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	104.141442279239	1	129	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTATTGTTTTTATTGTA	NA	False	NA	NA	False	NA	NA	NA	53145245	53009935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53010563_53028452_53028585_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127
59244	chr6	-	1552	4	NIC	ENSMUSG00000032641.19	novel	1643	4	NA	NA	213	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	41.0636362518253	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	NA	False	NA	NA	NA	134875328	134846119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134875271
59246	chr6	+	292	1	Intergenic	novelGene_4168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCCCGCTTCTGGTGTG	2875	False	NA	NA	False	NA	NA	NA	52082025	52082317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_52082000_52082300
59247	chr7	-	974	3	NNC	ENSMUSG00000044709.7	novel	652	2	NA	NA	-53	176	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17	972	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAATCTGGCTCTGGCTT	3266	False	NA	NA	False	NA	NA	NA	19306946	19298694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19298802_19298849_19299602_19306831
59248	chr4	+	1826	9	NNC	ENSMUSG00000028581.18	novel	397	2	NA	NA	-55208	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	204.589222590047	1	77	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTGCTCTGTCTCATGT	NA	False	NA	NA	False	NA	NA	NA	130585227	130663444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130585416_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771_130662721_130663364
59250	chr5	+	1130	1	Intergenic	novelGene_853	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCCTGGGAACAGAGTTA	9058	False	NA	NA	False	NA	NA	NA	125451175	125452305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_125451200_125452300
59251	chr1	-	1202	6	NNC	ENSMUSG00000026234.13	novel	3072	12	NA	NA	20	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2957.55378649316	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287066	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278401_86278518_86278611_86284289_86284464_86284678_86285175_86285828_86285946_86286927
59252	chr14	-	2662	2	Intergenic	novelGene_652	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	60	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCCAAATGGCTGACCCT	NA	False	NA	NA	False	NA	NA	NA	122687791	122684989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_122685803_122685942
59255	chr15	-	1376	10	NIC	ENSMUSG00000022617.16	novel	1416	10	NA	NA	10	0	intron_retention	FALSE	canonical	3	62	junction_3	105.224627451097	125	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	1659	False	NA	NA	False	NA	NA	NA	89313623	89310562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
59256	chr17	-	1054	3	ISM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	16	3	9	1	intron_retention	FALSE	canonical	3	21077	junction_1	1020	52	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACCTCCGTCTCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	34174618	34170976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34171093_34171194_34171566_34174051
59257	chr5	-	2640	19	FSM	ENSMUSG00000029217.17	ENSMUST00000071944.13	2659	19	-4	23	1	-1	multi-exon	FALSE	canonical	1	2	junction_5	3.16471674858358	26	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATACGTTTATCTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	73025791	72913081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_72913723_72914705_72914864_72914946_72915066_72917685_72917751_72920906_72921124_72921466_72921639_72922854_72922930_72926047_72926182_72928489_72928570_72931173_72931229_72936763_72936830_72939345_72939519_72941060_72941102_72943259_72943389_72944080_72944163_72946482_72946588_72980798_72980985_72982386_72982474_73025736
59258	chr7	-	1731	3	NNC	ENSMUSG00000086477.4	novel	1133	4	NA	NA	3	7261	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10	41	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCACTAAGCCTAGCTGGA	9367	False	NA	NA	False	NA	NA	NA	98352132	98341170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98342478_98342554_98342809_98351962
59259	chr17	-	978	6	FSM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	8	2	8	-2	multi-exon	FALSE	canonical	3	301	junction_5	28.3760462362183	1689	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGGCTTCAGATGCTG	NA	False	NA	NA	False	NA	NA	NA	87332826	87304685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
59261	chr4	+	1717	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	84	19	-23	-19	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	3483	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGTTTCTGAAACCCA	NA	False	NA	NA	False	NA	NA	NA	124608652	124626234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
59262	chr1	+	1385	5	NNC	ENSMUSG00000042751.15	novel	4626	11	NA	NA	497	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	103.278749024182	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGTGTCTTTGTCCAGA	NA	False	NA	NA	False	NA	NA	NA	152969722	152995012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_152969860_152987887_152987990_152988125_152988194_152991313_152991615_152994235
59263	chr7	-	1714	12	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	539.036253553161	39	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGCAAAGGTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	19005740	18990864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994796_18998450_18998496_18998578_18998636_18998684_18998751_19005438
59264	chr12	-	2580	9	NNC	ENSMUSG00000112977.2	novel	690	5	NA	NA	-7385	-8622	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2.57087047515039	23	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATAACTTTAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	109490051	109468076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_109468782_109469092_109469347_109470008_109470114_109472761_109472866_109473908_109474112_109480759_109480854_109482537_109482667_109488933_109489091_109489222
59265	chr3	-	1757	10	ISM	ENSMUSG00000027829.16	ENSMUST00000029416.14	2169	11	644	0	48	0	3prime_fragment	FALSE	canonical	3	90	junction_8	39.501836181732	173	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTCAAATATCTTATTT	NA	False	NA	NA	False	NA	NA	NA	65865026	65853571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65864273_65864384_65864921
59267	chr10	+	1341	3	NNC	ENSMUSG00000064030.16	novel	1158	3	NA	NA	-27	4	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	127.5	422	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGGCTTTGGCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	128583730	128602437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128583868_128601015_128601261_128601478
59268	chr6	+	1955	4	NNC	ENSMUSG00000107476.4	novel	1776	6	NA	NA	21	-7993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4.96655480858378	23	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGTGTTGGTCATGGTA	2638	False	NA	NA	False	NA	NA	NA	48481342	48493353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_48481485_48485205_48485318_48488748_48489074_48491977
59270	chr17	-	1481	12	FSM	ENSMUSG00000024012.19	ENSMUST00000118366.9	1897	12	416	0	-2	0	multi-exon	FALSE	canonical	3	643	junction_4	160.665917948029	314	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	NA	False	NA	NA	NA	29566492	29551049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
59272	chr11	-	3844	1	Antisense	novelGene_ENSMUSG00000006127.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGGACGCGGGAGTGGG	7578	False	NA	NA	False	NA	NA	NA	75525521	75521677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75521700_75525500
59273	chr1	-	2884	13	NIC	ENSMUSG00000036766.13	novel	3632	13	NA	NA	35	-5	combination_of_known_junctions	FALSE	canonical	1	3	junction_12	4.19242040936842	21	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACTCACTTGTCTCATTC	NA	False	NA	NA	False	NA	NA	NA	84618171	84347564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_84348597_84361505_84361753_84373335_84373468_84383659_84383774_84396369_84396493_84423115_84423341_84454065_84454180_84472451_84472606_84512572_84512719_84558376_84558544_84560724_84560820_84563033_84563343_84618145
59274	chr14	+	1981	10	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	-49	-256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	507.089540879257	1	95	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCATATTGAAGAAAACT	NA	False	NA	NA	False	NA	NA	NA	122344500	122396760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363608_122370691_122370820_122374783_122374905_122377059_122377187_122378610_122378727_122389375_122389488_122392739_122392912_122396060
59275	chr2	+	1809	1	FSM	ENSMUSG00000109946.2	ENSMUST00000209765.2	1898	1	84	5	84	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	142	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCTTCCCTTTCTCATTT	NA	False	NA	NA	False	NA	NA	NA	27332419	27334228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_27332400_27334200
59276	chr12	+	1638	6	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55393	14	16094	-14	3prime_fragment	FALSE	canonical	3	37	junction_2	5.54977477020464	92	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATCCTGAAGAAGAAATTG	NA	False	NA	NA	False	NA	NA	NA	105727627	105748692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105747108_105747268_105747929
59277	chr17	-	2241	6	FSM	ENSMUSG00000025730.15	ENSMUST00000167626.8	2506	6	265	0	119	0	multi-exon	FALSE	canonical	3	194	junction_1	13.251415018782	67	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTGTCTGGCTTCATCT	NA	False	NA	NA	False	NA	NA	NA	26138361	26101087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338
59280	chr8	-	950	7	Antisense	novelGene_ENSMUSG00000091490.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTTCCGGGTCTCACAA	NA	False	NA	NA	False	NA	NA	NA	43646873	43633573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_43633648_43636156_43636402_43636738_43636834_43638313_43638490_43640601_43640755_43643297_43643407_43646775
59281	chr5	-	1118	9	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	23	414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	545.359743655507	24	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGCCTTTGAGCTACTT	NA	False	NA	NA	False	NA	NA	NA	25047584	25008250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182_25047306_25047503
59282	chrX	+	2360	1	Intergenic	novelGene_4054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCCACACCTCAAACACA	NA	False	NA	NA	False	NA	NA	NA	129331375	129333735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_129331400_129333700
59283	chr11	-	2429	11	NIC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	162	-7	combination_of_known_junctions	TRUE	canonical	3	14	junction_10	5.85149553533112	18	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCAAAGAGCAGAATTCAT	NA	False	NA	NA	False	NA	NA	NA	4073253	4047045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4073165
59284	chr18	+	2749	15	FSM	ENSMUSG00000039616.11	ENSMUST00000068006.9	2903	15	154	0	-33	0	multi-exon	FALSE	canonical	2	8	junction_8	5.18878303533257	36	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCTGCCATTATTGAG	NA	False	NA	NA	False	NA	NA	NA	24786901	24834632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24825574_24825681_24828930_24829070_24832909_24833015_24834442
59285	chr1	+	940	7	NNC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_1	233.142779333943	1416	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGTGTGTGTTTATATGA	NA	False	NA	NA	False	NA	NA	NA	134890297	134901896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134890348_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
59286	chr5	-	2091	19	NIC	ENSMUSG00000029276.14	novel	2042	19	NA	NA	85	-18	combination_of_known_junctions	FALSE	canonical	3	9	junction_18	79.5863534427919	4	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAAATTTTACTACTAG	NA	False	NA	NA	False	NA	NA	NA	107745325	107696852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745157
59287	chr3	+	824	5	ISM	ENSMUSG00000049288.5	ENSMUST00000062058.5	3312	6	13259	2147	-3893	1796	3prime_fragment	FALSE	canonical	0	0	junction_1	2.8613807855649	22	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTATAAATTCTACA	1266	False	NA	NA	False	NA	NA	NA	96521723	96531340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96521872_96525916_96526058_96528624_96528721_96529458_96529537_96530979
59288	chr12	-	1858	4	NNC	ENSMUSG00000021276.11	novel	445	4	NA	NA	-1	-9	intron_retention	FALSE	canonical	3	5	junction_1	206.236649399556	46	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAATCTAAACTCCTAGT	3369	False	NA	NA	False	NA	NA	NA	110855559	110844037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110844549_110845130_110846249_110850323_110850493_110855499
59289	chr11	-	2579	10	NNC	ENSMUSG00000000782.17	novel	2059	11	NA	NA	-201	85	at_least_one_novel_splicesite	FALSE	canonical	3	108	junction_1	48.3707390377874	259	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGACTGAGTAGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	52173599	52143112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_52144790_52145925_52145999_52147084_52147134_52147566_52147675_52147775_52147939_52148510_52148631_52151357_52151449_52152339_52152452_52172948_52173074_52173538
59290	chr10	-	1859	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	2	-482	2	-17	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	1473	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCAATTGGCCTTAATCT	NA	False	NA	NA	False	NA	NA	NA	59838931	59823247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
59291	chr2	+	1069	2	NIC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	-173	-6	intron_retention	FALSE	canonical	3	4804	junction_1	0	2	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACTGCCTTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	26802030	26803324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26802458_26802682
59292	chr10	-	2917	21	FSM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	84	23	32	-2	multi-exon	TRUE	canonical	3	41	junction_20	26.4920271025077	33	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAATTTTTTATAT	7381	False	NA	NA	False	NA	NA	NA	81127017	81109063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81126881
59293	chr16	+	4316	1	FSM	ENSMUSG00000071636.9	ENSMUST00000169803.5	5380	1	817	247	817	-247	mono-exon	FALSE	NA	NA	NA	NA	NA	9	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCCCAAAGAAAAGTAAAC	861	False	NA	NA	False	NA	NA	NA	17027283	17031599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17027300_17031600
59294	chr4	-	2511	15	FSM	ENSMUSG00000028637.17	ENSMUST00000238759.2	3909	15	20	1378	1	-2	multi-exon	FALSE	canonical	2	5	junction_1	6.79285338741071	25	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATTGTTTGATATACCT	9743	False	NA	NA	False	NA	NA	NA	119272698	119181040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_119181391_119181737_119181806_119188319_119188435_119188678_119188816_119190776_119190919_119196957_119197071_119206926_119207072_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
59295	chr11	-	583	1	FSM	ENSMUSG00000065591.3	ENSMUST00000083657.3	107	1	-284	-192	-284	192	mono-exon	FALSE	NA	NA	NA	NA	NA	5	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAAATGGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	23429951	23429368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_23429400_23430000
59296	chr13	-	1157	2	FSM	ENSMUSG00000017778.15	ENSMUST00000132233.2	709	2	-443	-5	-16	0	multi-exon	FALSE	canonical	3	10515	junction_1	0	43	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	NA	False	NA	NA	NA	86194909	86192934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_86193028_86193845
59297	chr9	-	964	5	NNC	ENSMUSG00000032112.11	novel	1220	5	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	353.637172819827	313	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTCTCTCCTAACTGA	1754	False	NA	NA	False	NA	NA	NA	44318616	44315056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44315422_44315630_44315758_44316539_44316644_44318100_44318276_44318423
59298	chr2	+	1866	8	NNC	ENSMUSG00000027287.15	novel	2723	8	NA	NA	2	-801	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	172.260955340129	1	112	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATTAAATTTTATAATTA	NA	False	NA	NA	False	NA	NA	NA	120398179	120430935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120398288_120414747_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429786
59299	chr14	+	2864	12	ISM	ENSMUSG00000022096.15	ENSMUST00000163060.2	5278	18	7602	0	7602	0	3prime_fragment	FALSE	canonical	2	7	junction_11	3.66804381851491	18	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACATCTGTTCCGAGCAT	NA	False	NA	NA	False	NA	NA	NA	70800941	70810984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_70801123_70802741_70802824_70803468_70803633_70803749_70803987_70804219_70804386_70804588_70804659_70804941_70805073_70805215_70805336_70805416_70805533_70808817_70808983_70809347_70809477_70809681
59301	chr1	+	804	1	Intergenic	novelGene_396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATACGTTGACCTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	84819045	84819849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_84819000_84819800
59302	chr16	+	1686	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	-145	3	-145	-3	multi-exon	FALSE	canonical	0	0	junction_2	202.97702694982	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTTCTTGGCTTCAAC	NA	False	NA	NA	False	NA	NA	NA	22738841	22758499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
59304	chr14	+	3813	1	ISM	ENSMUSG00000048379.10	ENSMUST00000065562.6	6877	2	15352	7	15118	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	57	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAAAGCTTTGTCGTTTT	3644	False	NA	NA	False	NA	NA	NA	47529739	47533552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_47529700_47533600
59305	chr17	-	498	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173678.3	685	3	6	181	0	-181	multi-exon	FALSE	canonical	3	1189	junction_1	13.5	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCCTGCGGATGGCGT	NA	False	NA	NA	False	NA	NA	NA	34159299	34158512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34158638_34158721_34158793_34158997
59306	chr9	-	4231	2	FSM	ENSMUSG00000032733.7	ENSMUST00000050916.7	4571	2	315	25	315	-25	multi-exon	FALSE	canonical	1	2	junction_1	0	8	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTTTCCAGTTAACTAG	NA	False	NA	NA	False	NA	NA	NA	56835340	56824501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_56825989_56832596
59307	chr5	+	1721	12	NIC	ENSMUSG00000041939.15	novel	1660	11	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	45.2173812847221	441	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	NA	NA	NA	114582343	114598652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
59308	chr12	-	943	1	Intergenic	novelGene_4438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTCTGCCAAGTCAT	NA	False	NA	NA	False	NA	NA	NA	87323066	87322123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_87322100_87323100
59309	chr17	+	2343	1	Intergenic	novelGene_304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGCCTCTTGTCTCAC	NA	False	NA	NA	False	NA	NA	NA	82445817	82448160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_82445800_82448200
59310	chr6	+	1407	10	FSM	ENSMUSG00000034744.14	ENSMUST00000037376.14	1405	10	-2	0	-2	0	multi-exon	FALSE	canonical	3	202	junction_1	21.8281729836116	596	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9256	False	NA	NA	False	NA	NA	NA	83771961	83779538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
59311	chr6	-	1820	3	NIC	ENSMUSG00000032641.19	novel	1610	4	NA	NA	-128	-12	combination_of_known_junctions	FALSE	canonical	2	13	junction_2	11.5	1	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTTTCACTATAAAGTG	NA	False	NA	NA	False	NA	NA	NA	134874175	134846136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134847446_134864592_134864749_134873820
59313	chr11	+	1315	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	17	3	17	0	multi-exon	TRUE	canonical	3	113	junction_1	5.71547606649408	478	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTTCCAGGCCGCT	8760	False	NA	NA	False	NA	NA	NA	69856238	69858708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
59314	chr7	+	1694	1	Antisense	novelGene_ENSMUSG00000030871.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACACACACGTGGGCTC	NA	False	NA	NA	False	NA	NA	NA	121664579	121666273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_121664600_121666300
59315	chr16	+	1267	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	64	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1361.98577452189	1	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTCTTACACTTGCAA	NA	False	NA	NA	False	NA	NA	NA	84571074	84619770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
59316	chr11	+	614	2	FSM	ENSMUSG00000054418.7	ENSMUST00000155384.2	1784	2	110	1060	110	-1060	multi-exon	FALSE	canonical	3	27	junction_1	0	274	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCGGTCTCAGAGCTTTC	NA	False	NA	NA	False	NA	NA	NA	117502182	117503623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117502261_117503087
59317	chr2	+	1224	12	NIC	ENSMUSG00000005881.14	novel	1377	13	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	253.032288143184	23	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGACTGGTCTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	155850026	155860196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_155850149_155850284_155850356_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
59318	chr11	+	1056	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	-7	8	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	44.7812460746684	257	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTATGAAGATGATCAAT	8968	False	NA	NA	False	NA	NA	NA	116734403	116740463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
59319	chr7	+	398	1	Intergenic	novelGene_2975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCGTGCATATTGCTAATAA	NA	False	NA	NA	False	NA	NA	NA	64403892	64404290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_64403900_64404300
59320	chr9	-	2206	2	Antisense	novelGene_ENSMUSG00000033491.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCTGCTGCACTGAGTG	NA	False	NA	NA	False	NA	NA	NA	86639259	86625702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_86625858_86637208
59322	chr10	+	1644	5	NIC	ENSMUSG00000002147.19	novel	3775	22	NA	NA	1286	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	101.635070226768	68	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAATCTACTGTACACA	721	False	NA	NA	False	NA	NA	NA	127493915	127496826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127494130_127494497_127494570_127495301_127495368_127495457_127495587_127495663
59323	chr3	-	1169	5	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	-1	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.925225100195	8	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATTATGGTTTCA	NA	False	NA	NA	False	NA	NA	NA	90398332	90395669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90396068_90396489_90396901_90397460_90397580_90397854_90397902_90398138
59324	chr4	-	1168	4	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.117073382335	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAACTTCTTTTTGTGTG	2	True	NA	NA	False	NA	NA	NA	41098180	41092727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093507_41094755_41094839_41095144_41095272_41098001
59326	chr16	+	658	6	ISM	ENSMUSG00000022884.17	ENSMUST00000232287.2	1001	9	5	1215	-3	25	5prime_fragment	FALSE	canonical	3	441	junction_1	590.605926147038	37	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTTTATTTCTTCTAT	6059	False	NA	NA	False	NA	NA	NA	22926513	22929093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983
59327	chr14	-	1707	12	FSM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	-24	-1	-16	-1	multi-exon	FALSE	canonical	3	141	junction_8	15.4084875183551	405	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAATGTCTTTTTATTTT	226	False	NA	NA	False	NA	NA	NA	118370183	118349886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
59328	chr10	-	1203	8	NNC	ENSMUSG00000020171.9	novel	1327	7	NA	NA	-1	80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.943206216989	9	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGTGCTTTGATCATA	3387	False	NA	NA	False	NA	NA	NA	117060396	117051045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117051112_117051300_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
59330	chr17	-	2495	3	FSM	ENSMUSG00000023909.5	ENSMUST00000024702.5	2575	3	76	4	76	-4	multi-exon	FALSE	canonical	3	32	junction_1	3.5	26	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCCCGCCTGACCACAT	NA	False	NA	NA	False	NA	NA	NA	23959296	23955163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23956974_23957113_23957336_23958833
59331	chr4	-	1974	8	FSM	ENSMUSG00000028885.9	ENSMUST00000030709.9	2006	8	27	5	27	-5	multi-exon	FALSE	canonical	3	69	junction_5	8.56666534317997	158	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGCAACCGTGAGGGATC	NA	False	NA	NA	False	NA	NA	NA	132484536	132460281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132461071_132465329_132465464_132465547_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
59332	chr10	+	1268	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	150	635	68	-12	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	1	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTCTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	126899552	126903154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
59333	chr13	+	794	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-13	-21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7949	False	NA	NA	False	NA	NA	NA	74554514	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74555253_74555388
59334	chr11	+	2134	4	Antisense	novelGene_ENSMUSG00000017677.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	108	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGATCATTAGTTACTTT	NA	False	NA	NA	False	NA	NA	NA	79130212	79133643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_79131295_79131517_79131622_79132420_79132534_79132808
59335	chr15	-	1897	14	FSM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	4	2	4	-2	multi-exon	FALSE	canonical	3	71	junction_8	11.6872458678823	184	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGGTGTTTGTCACTGTG	NA	False	NA	NA	False	NA	NA	NA	75550645	75528885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
59336	chr5	-	1944	6	FSM	ENSMUSG00000039244.11	ENSMUST00000046418.3	2208	6	260	4	31	-2	multi-exon	FALSE	canonical	3	130	junction_3	6.98569967862919	76	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATAGGCATTGTGGGGTT	NA	False	NA	NA	False	NA	NA	NA	143300855	143286965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300657
59337	chr10	+	4418	1	FSM	ENSMUSG00000098188.2	ENSMUST00000182161.2	4482	1	-1	65	-1	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	16	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTTGTGAGTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	59057773	59062191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59057800_59062200
59339	chrX	+	3192	6	Antisense	novelGene_ENSMUSG00000031392.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	115	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTCGCGCACGATCA	NA	False	NA	NA	False	NA	NA	NA	73060834	73067113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_73061120_73061737_73061975_73063506_73063570_73063931_73064142_73064548_73066803_73066970
59341	chr8	+	1464	1	NIC	ENSMUSG00000033313.12	novel	1901	3	NA	NA	3168	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	8	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTCCTGCGTCCTGTGA	4732	False	NA	NA	False	NA	NA	NA	105994481	105995945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_105994500_105995900
59342	chr17	-	1032	8	NNC	ENSMUSG00000038045.15	novel	2060	7	NA	NA	-8959	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	86.9874492471794	101	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGGAACATTGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	79223380	79192322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79204986_79205077_79212937_79213051_79223053_79223159_79223358
59343	chr10	-	850	1	Intergenic	novelGene_3492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCATAGGGTTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	81788688	81787838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_81787800_81788700
59345	chr4	-	1090	6	NIC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	713	0	combination_of_known_junctions	FALSE	canonical	3	192	junction_4	4076.75741736003	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAATAATGTCTAGTTTT	NA	False	NA	NA	False	NA	NA	NA	119150964	119135186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119142305_119142340_119150938
59346	chr3	-	1172	6	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	5	-15	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	698.50537578461	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTATTTTCCTTTAAATT	NA	False	NA	NA	False	NA	NA	NA	90416764	90407016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_90407415_90410402_90410590_90412701_90412786_90413414_90413569_90414851_90414934_90416497
59347	chr12	-	1141	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	-363	16	-352	0	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	70	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGAGTATCATTGAGCA	NA	False	NA	NA	False	NA	NA	NA	71183810	71169962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
59348	chr17	-	995	3	ISM	ENSMUSG00000024137.10	ENSMUST00000226941.2	2642	13	10456	-85	-402	-4	3prime_fragment	FALSE	canonical	3	112	junction_2	2	57	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGCAGTTTGTTGTGAT	6780	False	NA	NA	False	NA	NA	NA	24663910	24662759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24663451_24663520_24663664_24663749
59349	chr5	+	2674	1	ISM	ENSMUSG00000070639.6	ENSMUST00000112707.3	6726	5	71615	11	71615	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	32	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCACTAGAATCTGATTGG	NA	False	NA	30	True	NA	NA	NA	105635255	105637929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_105635300_105637900
59350	chr17	-	2222	4	NNC	ENSMUSG00000024114.16	novel	1799	5	NA	NA	-25	-67	intron_retention	FALSE	canonical	3	10	junction_2	9.46337971105226	30	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGGTCCTATGGGTCTG	NA	False	NA	NA	False	NA	NA	NA	24063171	24060092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24061500_24062173_24062318_24062415_24062846_24062930
59351	chr4	+	1243	1	NIC	ENSMUSG00000078521.3	novel	1275	3	NA	NA	72	-11614	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGGACAGCCAGAGCTA	NA	False	NA	NA	False	NA	NA	NA	134238381	134239624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_134238400_134239600
59354	chr11	+	2560	6	ISM	ENSMUSG00000005951.14	ENSMUST00000006105.7	2808	7	4474	15	4474	-6	3prime_fragment	TRUE	canonical	0	0	junction_5	1.35646599662505	6	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCAGAATTTTATCCCT	4181	False	NA	NA	False	NA	NA	NA	73094759	73115322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_73094890_73104156_73104341_73104880_73105034_73105790_73105967_73108624_73108826_73113606
59356	chr5	-	1443	1	Antisense	novelGene_ENSMUSG00000038384.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTTAATATCATTTCCA	3682	False	NA	NA	False	NA	NA	NA	123306672	123305229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_123305200_123306700
59357	chr10	-	1390	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	16	-79	-1	78	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	997	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAGTGTGCTTTGATCA	3387	False	NA	NA	False	NA	NA	NA	117060396	117051047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
59358	chr13	-	641	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	476	4	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_3	558.939670765598	2	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGTGGTCACTTGTAT	NA	False	NA	NA	False	NA	NA	NA	100880145	100872632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100879905
59359	chr3	-	803	3	FSM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	46	-83	46	-2	multi-exon	FALSE	canonical	3	67	junction_2	1287.5	66	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCTGTGGTTATAAGACT	NA	False	NA	NA	False	NA	NA	NA	89325278	89322780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89323271_89323580_89323709_89325093
59360	chr18	+	2994	3	FSM	ENSMUSG00000056214.10	ENSMUST00000070219.9	3147	3	143	10	143	-10	multi-exon	FALSE	canonical	3	46	junction_2	5.5	21	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTTGAGTTACCGT	NA	False	NA	NA	False	NA	NA	NA	80090247	80162844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80090358_80123039_80123263_80160183
59361	chr18	+	2100	12	NNC	ENSMUSG00000019143.16	novel	2002	12	NA	NA	16	159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	61.2570791996004	1	82	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGCATATTACTTTTGCA	NA	False	NA	NA	False	NA	NA	NA	36916337	36924906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36916548_36918617_36918702_36918929_36919042_36919163_36919260_36920561_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923306_36923521_36923669_36924122
59362	chr8	-	1514	7	NIC	ENSMUSG00000037022.4	novel	1685	8	NA	NA	10271	-3	combination_of_known_junctions	FALSE	canonical	2	3	junction_6	23.7814119756493	223	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTTTGTAGAGTTTCCC	NA	False	NA	NA	False	NA	NA	NA	80011038	79994539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80010837
59363	chr11	+	1627	8	NIC	ENSMUSG00000056938.17	novel	961	8	NA	NA	72	0	intron_retention	FALSE	canonical	3	12	junction_2	45.7709470279645	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTCTGGGAAC	NA	False	NA	NA	False	NA	NA	NA	102994005	103003023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102994196_102994351_102994471_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
59364	chr16	-	2369	13	NNC	ENSMUSG00000033581.18	novel	3267	14	NA	NA	1540	-453	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	305.341020645587	1	139	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTACCCAAAATTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	21906328	21878662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898947_21900479_21900736_21902673_21902738_21906277
59365	chr14	-	1642	9	NIC	ENSMUSG00000022177.10	novel	1587	10	NA	NA	59	-11	intron_retention	FALSE	canonical	3	401	junction_4	39.3904731502428	33	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGCCTTAGAGTTTTAG	NA	False	NA	NA	False	NA	NA	NA	54791759	54779252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
59366	chr17	-	1231	10	NIC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	-16	-104	intron_retention	FALSE	canonical	3	143	junction_3	13.752665286014	5	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCATACTGATAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	25459114	25453394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
59367	chr5	-	2140	11	FSM	ENSMUSG00000061979.9	ENSMUST00000076228.3	2321	11	162	19	162	-19	multi-exon	FALSE	canonical	3	313	junction_2	26.6850145212627	97	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGGAGGTCTTGTAAAAG	NA	False	NA	NA	False	NA	NA	NA	134205451	134176911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
59369	chr6	-	1547	6	NNC	ENSMUSG00000068329.13	novel	1605	7	NA	NA	96	-2	intron_retention	FALSE	canonical	2	5	junction_5	223.83065026935	4	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTTACAGTCAAAAGTGG	2122	False	NA	NA	False	NA	NA	NA	83031327	83028262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83028616_83028722_83028819_83029453_83030052_83030309_83030505_83030593_83030799_83031227
59370	chr13	+	1786	14	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	7	465	combination_of_known_splicesites	FALSE	canonical	2	4	junction_9	216.211298140932	2	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGGAGAAGAGAGAGTGC	1316	False	NA	NA	False	NA	NA	NA	59733214	59773943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232
59371	chr8	+	1349	5	FSM	ENSMUSG00000031840.15	ENSMUST00000110093.9	1442	5	24	69	0	-27	multi-exon	FALSE	canonical	3	27	junction_1	12.8646803302686	194	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTGGCCCAGCCCCTG	NA	False	NA	NA	False	NA	NA	NA	71207351	71211254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71207518_71208502_71208731_71209093_71209213_71209783_71209909_71210543
59372	chr5	+	1218	8	Antisense	novelGene_ENSMUSG00000029328.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCCGGCCGCCGCCTGCG	NA	False	NA	NA	False	NA	NA	NA	100182587	100186767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100182837_100183486_100183597_100183964_100184057_100184722_100184838_100184945_100185076_100185426_100185587_100185669_100185843_100186578
59373	chr16	-	1460	6	Antisense	novelGene_ENSMUSG00000034206.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCACTCGGCAGCAATG	NA	False	NA	NA	False	NA	NA	NA	36915765	36907004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_36907053_36909629_36909742_36911390_36911518_36913183_36913344_36914381_36914489_36914859
59375	chr15	+	1806	4	NIC	ENSMUSG00000022330.6	novel	1724	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	14.8548533034381	96	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCTTGAGATTCATCT	117	False	NA	NA	False	NA	NA	NA	35296243	35303451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_35296614_35300334_35301102_35302057_35302158_35302882
59377	chr7	+	1566	11	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	2338	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	602.247291401132	1	90	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTAACACTTGAACAGCC	NA	False	NA	NA	False	NA	NA	NA	120237075	120258689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120237225_120239466_120239561_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250141_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
59378	chr18	-	1515	6	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	14079	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.70772887960928	66	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCTGCTTTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	77120860	77097734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77098747_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
59379	chr7	-	2356	16	Antisense	novelGene_ENSMUSG00000109154.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	78	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGCGGCCGCACAGCGCGG	NA	False	NA	NA	False	NA	NA	NA	49507984	49428210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_49428249_49428327_49428453_49430048_49430139_49430867_49430917_49431687_49431792_49435813_49435973_49436978_49437117_49441715_49441785_49448051_49448174_49456272_49456373_49467777_49467858_49476454_49476641_49478690_49478777_49498240_49498293_49498483_49498568_49507110
59380	chr15	+	1219	8	Antisense	novelGene_ENSMUSG00000023755.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	672	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATACCTAGCCGGGCGGC	NA	False	NA	NA	False	NA	NA	NA	98775663	98779321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98776179_98776330_98776416_98776888_98776936_98777138_98777197_98777285_98777368_98777656_98777726_98778388_98778460_98779029
59381	chr8	+	1439	2	ISM	ENSMUSG00000031565.19	ENSMUST00000120106.9	3386	9	6696	-293	3823	292	3prime_fragment	FALSE	canonical	3	271	junction_1	0	3	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCTGTACATTCAGATGT	9353	False	NA	NA	False	NA	NA	NA	26063561	26065093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26063668_26063760
59382	chr7	+	1123	10	NNC	ENSMUSG00000053898.13	novel	1267	10	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	224.456930345772	130	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28524733	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530848_28531155_28531293_28531428
59383	chr11	-	805	3	FSM	ENSMUSG00000018293.5	ENSMUST00000178254.2	724	3	11	-92	-2	3	multi-exon	FALSE	canonical	3	1190	junction_2	4423	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGTGTTGGTTTGCAC	NA	False	NA	NA	False	NA	NA	NA	70545436	70542672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70543048_70543612_70543781_70545174
59384	chr4	+	3097	18	NIC	ENSMUSG00000028894.19	novel	634	5	NA	NA	22	-9	combination_of_known_junctions	TRUE	canonical	1	1	junction_1	44.0385958435942	195	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTAATGGTGACTATG	3355	False	NA	NA	False	NA	NA	NA	124663036	124695289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124663249_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
59385	chr5	-	909	7	NIC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	-18	67	combination_of_known_junctions	FALSE	canonical	3	63	junction_5	669.869058514838	5	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCTTTCAGTGATGCTA	NA	False	NA	NA	False	NA	NA	NA	30278633	30265994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273537_30276631_30276706_30278358
59386	chr17	+	1809	5	Intergenic	novelGene_298	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	136	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCACTGTGCTAGGTACT	NA	False	NA	NA	False	NA	NA	NA	80336946	80343185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_80337972_80339970_80340069_80340156_80340215_80341474_80341677_80342759
59387	chr4	+	1160	10	Antisense	novelGene_ENSMUSG00000028455.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAGAGGTGGGGCAGAGC	NA	False	NA	NA	False	NA	NA	NA	43028022	43031402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43028287_43028930_43029069_43029280_43029360_43029491_43029634_43029765_43029904_43030047_43030142_43030242_43030297_43030491_43030527_43030962_43031111_43031334
59388	chr12	+	1384	8	NNC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	86.0924989029064	817	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACATCTAGTTTGAGTT	NA	False	NA	NA	False	NA	NA	NA	28699632	28709587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_28699778_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
59390	chr17	+	1231	5	NIC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	14	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	427.836709504923	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGAGGTTTGCACACAT	NA	False	NA	NA	False	NA	NA	NA	48717055	48724280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_48717401_48718291_48718437_48721253_48721313_48722248_48722362_48723711
59391	chr10	-	1989	11	FSM	ENSMUSG00000020230.16	ENSMUST00000020452.12	2016	11	13	14	6	-9	multi-exon	FALSE	canonical	2	10	junction_3	2.63818119165458	44	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAACGAACAAATTCAT	NA	False	NA	NA	False	NA	NA	NA	76073658	76043074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072656_76073583
59392	chr2	-	1237	4	NIC	ENSMUSG00000009549.15	novel	798	5	NA	NA	4	-2	intron_retention	FALSE	canonical	3	1463	junction_1	15.1730755689881	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTATCCTACAGGTGG	NA	False	NA	NA	False	NA	NA	NA	118310125	118306343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_118307341_118309401_118309515_118309858_118309932_118310071
59393	chr3	-	1432	5	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.925225100195	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAACAAAAAAATTTAT	NA	False	NA	NA	False	NA	NA	NA	90398325	90395684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90396459_90396595_90396901_90397460_90397580_90397854_90397902_90398138
59394	chr2	-	1388	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	13	0	13	0	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	844	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	30857932	30850638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
59395	chr5	-	1794	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	-27	2	-3	-2	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGTTTCCTGTTGAGTC	NA	False	NA	NA	False	NA	NA	NA	143951698	143924728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
59396	chr4	-	2812	9	NNC	ENSMUSG00000028232.14	novel	2773	9	NA	NA	14	-9	intron_retention	FALSE	canonical	1	1	junction_6	29.7394939432399	73	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATAAAATGAACAAGAAAAC	8	True	NA	NA	False	NA	NA	NA	3574790	3549049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3567280_3567475_3569363_3569753_3570320_3570373_3574703
59397	chr2	-	2107	4	NNC	ENSMUSG00000085103.4	novel	474	3	NA	NA	-3846	12626	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	6.16441400296898	73	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCTTTTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	175863505	175845189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175847006_175859274_175859336_175859528_175859656_175863402
59399	SIRV7	+	854	5	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATAGTAGTAAGAAAATCA	NA	False	NA	NA	False	NA	NA	NA	56031	147955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_56098_70883_70987_78840_78942_114753_114993_147610
59400	chr6	-	1533	3	NIC	ENSMUSG00000012483.5	novel	670	4	NA	NA	-13	0	intron_retention	FALSE	canonical	3	1416	junction_1	61.5	34	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	-28	False	NA	NA	False	NA	NA	NA	8259153	8255935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_8256248_8256694_8257762_8258999
59402	chr8	-	2239	1	Genic_Genomic	ENSMUSG00000045248.7	novel	NA	NA	NA	NA	51474	3	mono-exon	FALSE	NA	NA	NA	NA	NA	58	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTTTTGGAATCATTTCT	NA	False	NA	NA	False	NA	NA	NA	73250640	73248401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_73248400_73250600
59403	chr6	+	1367	1	Intergenic	novelGene_4246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCCTTTTTTTGAGA	3773	False	NA	NA	False	NA	NA	NA	124943083	124944450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_124943100_124944400
59405	chr7	+	1644	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207555.2	1641	7	-18	15	5	-3	multi-exon	FALSE	canonical	3	134	junction_1	17.7458915433028	130	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATCTGCTGTCGACTG	NA	False	NA	NA	False	NA	NA	NA	44647094	44651810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
59406	chr4	+	1998	9	FSM	ENSMUSG00000028793.16	ENSMUST00000168461.8	2532	9	534	0	-9	0	multi-exon	FALSE	canonical	3	132	junction_2	17.2005632175228	124	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCATGTCACTGTCCTTGG	NA	False	NA	NA	False	NA	NA	NA	128952597	128978319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_128952690_128965529_128965736_128967294_128967437_128969362_128969526_128969954_128970070_128972699_128972841_128974134_128974343_128976539_128976672_128977520
59407	chr8	-	2006	1	Intergenic	novelGene_1738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCCTGTAGGGAAGGCAG	9125	False	NA	1	True	NA	NA	NA	111249013	111247007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111247000_111249000
59408	chr4	-	979	2	NNC	ENSMUSG00000078713.9	novel	639	2	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	50	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGGTTTTGTGTTTTTAA	7	True	NA	NA	False	NA	NA	NA	45108091	45105208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_45105645_45107548
59410	chrX	-	2323	1	FSM	ENSMUSG00000031224.7	ENSMUST00000033575.7	2316	1	-7	0	-7	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATGCTTATGTGATCAT	NA	False	NA	NA	False	NA	NA	NA	103900880	103898557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_103898600_103900900
59411	chr15	+	2900	11	NNC	ENSMUSG00000022401.13	novel	1641	11	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	15.7050947147733	39	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGAGTGGTCTGGCGTGT	NA	False	NA	NA	False	NA	NA	NA	81284349	81341671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81284489_81298632_81298750_81311476_81311885_81314890_81315094_81320914_81320978_81322267_81322382_81326579_81326666_81332519_81332698_81335101_81335223_81337065_81338057_81341191
59413	chr5	-	1465	5	NIC	ENSMUSG00000033434.16	novel	1481	7	NA	NA	-85	-11	intron_retention	FALSE	canonical	3	220	junction_2	9.89949493661167	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCCTCACCGGCC	NA	False	NA	NA	False	NA	NA	NA	110254875	110251855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518
59415	chr13	+	1478	11	NNC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	-2611	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	232.92017946069	1	56	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCTCATTGTGAATCC	NA	False	NA	NA	False	NA	NA	NA	19026421	19050964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19046730_19046807_19046907_19046924_19048172_19048283_19050289
59416	chr6	+	1519	4	NNC	ENSMUSG00000034192.6	novel	743	4	NA	NA	-27	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1030.86123648573	76	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCCTTTTTTATTACTTT	NA	False	NA	NA	False	NA	NA	NA	91493001	91499591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91493654_91493738_91494141_91496530_91496627_91499222
59417	chr9	-	3550	2	Genic_Genomic	ENSMUSG00000032122.16	novel	5943	18	NA	NA	-20	-20917	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACCACAACACAACACCAC	NA	False	NA	NA	False	NA	NA	NA	37166730	37162724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_37164204_37164659
59418	chr17	+	2260	3	NNC	ENSMUSG00000046070.10	novel	2625	2	NA	NA	-176	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	11	1	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGACCTAGAGTGTGA	8098	False	NA	NA	False	NA	NA	NA	25097554	25100985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25097799_25098926_25100600_25100642
59419	chr10	-	2026	6	NNC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	20983	-12	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	50.2736511504784	59	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCCCTGTTGCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	25151015	25044999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25150849
59420	chr2	-	2016	4	ISM	ENSMUSG00000090213.2	ENSMUST00000006587.7	2329	6	14505	1	-1874	-1	3prime_fragment	FALSE	canonical	3	221	junction_2	11.4697670227235	192	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTTTATTATATTTTTT	3887	False	NA	NA	False	NA	NA	NA	167488971	167484528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_167486103_167486683_167486897_167487951_167488097_167488887
59421	chr11	+	3268	10	Antisense	novelGene_ENSMUSG00000020275.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	30	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGGCAGGGGCAGGGGGC	NA	False	NA	NA	False	NA	NA	NA	23691071	23720994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_23693043_23694240_23694311_23694437_23694506_23695428_23695645_23695747_23695849_23698748_23698892_23703216_23703309_23706898_23707048_23711012_23711153_23720676
59422	chr4	+	837	5	NNC	ENSMUSG00000028773.9	novel	823	4	NA	NA	143	-4	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	2159.9895109699	132	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGTTGTCTGTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	130202530	130209252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130202644_130203234_130203396_130206083_130206257_130207746_130207849_130208964
59423	chr5	+	1475	1	FSM	ENSMUSG00000101856.2	ENSMUST00000188465.2	1454	1	-34	13	-34	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	124	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTCTTTATACGTCTCT	NA	False	NA	NA	False	NA	NA	NA	25734976	25736451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_25735000_25736500
59424	chr4	-	1876	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	71	22	-18	-15	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	869	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGATTTGGAGAAATGG	NA	False	NA	NA	False	NA	NA	NA	134262627	134252889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
59426	chr2	+	1541	3	ISM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	23087	20	23087	-20	3prime_fragment	FALSE	canonical	3	1386	junction_1	62	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGCATTTGTAACTTA	NA	False	NA	NA	False	NA	NA	NA	143780326	143785224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_143780613_143781871_143781949_143784046
59427	chr11	+	1189	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	-22	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5640	1	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAACACAGGTGTAACTAT	3061	False	NA	NA	False	NA	NA	NA	75623764	75656662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642762_75655681
59429	chr8	+	1426	4	NIC	ENSMUSG00000014856.13	novel	895	5	NA	NA	-23	-1	intron_retention	FALSE	canonical	3	392	junction_1	10.8730042868667	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTAACGGCCGTGTGGGTG	45	False	NA	NA	False	NA	NA	NA	106053063	106055683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106053779_106054801_106054862_106054953_106055325_106055403
59430	chr1	-	1013	2	ISM	ENSMUSG00000041406.15	ENSMUST00000159617.2	605	7	3564	2588	3564	-2588	internal_fragment	FALSE	canonical	3	282	junction_1	0	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCAAGAACAAAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	163786028	163784431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_163784478_163785061
59431	chr1	-	1193	2	ISM	ENSMUSG00000041406.15	ENSMUST00000159617.2	605	7	5821	-262	5821	-259	3prime_fragment	FALSE	canonical	3	330	junction_1	0	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAAATAATCTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	163783771	163781581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_163781909_163782905
59432	chr10	+	2203	6	ISM	ENSMUSG00000020111.16	ENSMUST00000020311.13	2336	14	-30	105885	6	1071	5prime_fragment	FALSE	canonical	2	6	junction_5	80.2481152426647	8	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGAGATATTAACTACT	NA	False	NA	NA	False	NA	NA	NA	59538390	59594067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59592527
59433	chr5	+	2026	13	NNC	ENSMUSG00000056367.15	novel	1712	12	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.71288696459	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	25965076	26055686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_25965127_25972501_25972622_26003443_26003500_26014782_26014809_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
59434	chr8	-	2791	5	NNC	ENSMUSG00000074219.4	novel	2798	5	NA	NA	-8	-28	intron_retention	FALSE	canonical	0	0	junction_1	3.67423461417477	17	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAGTAATAAATGGAGT	6062	False	NA	NA	False	NA	NA	NA	84681842	84658985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84661236_84661474_84661700_84662360_84662458_84662696_84662805_84681731
59435	chr14	+	1082	10	NIC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	6	0	intron_retention	FALSE	canonical	3	234	junction_4	21.3911254241936	1572	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	NA	False	NA	NA	NA	55815918	55818985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
59436	chrX	-	1697	4	Intergenic	novelGene_4051	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGGTTTCCGTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	125456373	125443053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_125443159_125443201_125444168_125451532_125451852_125456066
59437	chrX	-	2718	2	ISM	ENSMUSG00000037010.8	ENSMUST00000039026.8	3149	3	6388	16	6388	-16	3prime_fragment	FALSE	canonical	3	8	junction_1	0	24	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAGTTCGATAGGATTCT	NA	False	NA	NA	False	NA	NA	NA	47117342	47114038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_47116585_47117170
59438	chr5	-	1003	8	NNC	ENSMUSG00000028945.10	novel	1784	8	NA	NA	7	-417	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_7	560.802195110554	67	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTTGGTGTGGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	25047615	25008237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047539
59440	chr4	+	1536	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	36	46	36	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	1073	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCCTTGGTTTCAATCA	NA	False	NA	NA	False	NA	NA	NA	86493940	86495476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_86493900_86495500
59441	chr16	-	2355	5	NNC	ENSMUSG00000039179.14	novel	1803	7	NA	NA	10979	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4.06201920231798	57	23	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCCCCTTTCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	10202333	10175824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10176300_10179121_10179277_10196760_10196984_10200653_10200798_10200975
59442	chr8	-	434	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-6	21	-6	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108166217	108165783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
59444	chr14	+	1067	1	Genic_Genomic	ENSMUSG00000061524.9	novel	NA	NA	NA	NA	1156	470	mono-exon	FALSE	NA	NA	NA	NA	NA	72	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGCATGAACATACTTTT	4479	False	NA	NA	False	NA	NA	NA	122716667	122717734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_122716700_122717700
59445	chr9	+	1317	1	Intergenic	novelGene_1154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGCTAGGTGAGCACATC	NA	False	NA	NA	False	NA	NA	NA	106056165	106057482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_106056200_106057500
59446	chr17	+	1996	8	NNC	ENSMUSG00000034254.18	novel	2190	7	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	43.5871166136724	17	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGGTTCTCTGCGGCCT	NA	False	NA	NA	False	NA	NA	NA	34824914	34832392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226_34831510_34831592
59447	chr13	+	2347	8	FSM	ENSMUSG00000021661.17	ENSMUST00000123924.8	2328	8	-47	28	8	-28	multi-exon	TRUE	canonical	3	142	junction_1	24.7839645327212	11	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATACTTTGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	98399654	98410398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
59448	chr11	+	423	2	ISM	ENSMUSG00000071866.13	ENSMUST00000213200.2	1450	5	2891	-13	2891	0	3prime_fragment	FALSE	canonical	3	36680	junction_1	0	66	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTTTGTATTGGAG	2962	False	NA	NA	False	NA	NA	NA	6369202	6369817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_6369286_6369477
59450	chr15	-	2391	3	NNC	ENSMUSG00000075511.10	novel	4969	3	NA	NA	7175	202	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.5	1	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGAAGTAAGCTCAC	9560	False	NA	NA	False	NA	NA	NA	83242168	83237845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83240049_83240154_83240289_83242114
59451	chr6	+	3085	7	NNC	ENSMUSG00000042213.18	novel	889	3	NA	NA	142	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6.62696511735701	21	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGACTTTATTTGATTAT	NA	False	NA	NA	False	NA	NA	NA	116241367	116307260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116241707_116250533_116250834_116282577_116282723_116290805_116291983_116292548_116292604_116305167_116305286_116306309
59452	chr11	+	1504	7	NNC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	0	0	intron_retention	FALSE	non_canonical	3	16	junction_6	50.5022001720937	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	NA	False	NA	NA	NA	102992534	103003026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995359_103002437
59453	chr8	-	1381	4	FSM	ENSMUSG00000002343.12	ENSMUST00000135931.2	1414	4	10	23	10	-23	multi-exon	FALSE	canonical	3	75	junction_3	12.0830459735946	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAGAGCGGGAGTGCAA	4695	False	NA	NA	False	NA	NA	NA	70687089	70677282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70678124_70682177_70682261_70683929_70684057_70686759
59454	chr13	+	1075	4	FSM	ENSMUSG00000021458.18	ENSMUST00000223204.2	1754	4	-14	693	-14	116	multi-exon	FALSE	canonical	2	25	junction_1	47.8632310744781	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAAGAAGGCTCAGGAT	NA	False	NA	NA	False	NA	NA	NA	63420615	63446789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525
59455	chr12	-	1241	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	850.691777320082	2	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105188975	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183774_105183906_105183961_105184481_105184552_105184917_105185089_105188791
59456	chr15	+	1677	9	FSM	ENSMUSG00000009585.19	ENSMUST00000175714.8	1953	9	36	240	-3	-228	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	2	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACCCTCCCGCCATCAA	8282	False	NA	NA	False	NA	NA	NA	79776639	79791879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
59457	chr5	+	2334	14	NNC	ENSMUSG00000029521.8	novel	634	4	NA	NA	43	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	102.220437053846	1	142	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAACACATAATCATTAAAA	9471	False	NA	NA	False	NA	NA	NA	110988137	111021969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110988407_110989071_110989410_110996254_110996369_110996486_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014126_111014293_111015873_111015950_111019886_111019974_111021345
59458	chr8	-	1817	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	223	4	9	-4	multi-exon	FALSE	canonical	3	690	junction_2	21.3822356174466	1	119	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGAATGGTTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	65186603	65171176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
59459	chr11	+	1543	2	Intergenic	novelGene_2402	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	55	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCACCCAAATTTTAAACT	NA	False	NA	NA	False	NA	NA	NA	70411605	70413766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_70412434_70413051
59460	chr13	+	1399	4	NNC	ENSMUSG00000113081.2	novel	452	3	NA	NA	12	36830	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	249.69892982461	22	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTTGTAGGGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	62411391	62459897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62411510_62420579_62420707_62420906_62420968_62458804
59461	chr8	+	3809	8	FSM	ENSMUSG00000055932.16	ENSMUST00000128081.8	4707	8	1	897	1	-897	multi-exon	FALSE	canonical	3	202	junction_7	44.6025532352358	1	103	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTCCCCAAACTCGATAA	NA	False	NA	NA	False	NA	NA	NA	92040186	92251961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399
59463	chr11	-	1274	1	Intergenic	novelGene_2523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	113586768	113585494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_113585500_113586800
59464	chr17	-	1728	1	Antisense	novelGene_ENSMUSG00000040771.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGCACACTCAAGATGGCC	NA	False	NA	NA	False	NA	NA	NA	48719000	48717272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_48717300_48719000
59465	chr11	+	2614	11	NNC	ENSMUSG00000037791.16	novel	4410	15	NA	NA	308	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	38.0178905253829	1	72	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCACCGTGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	77873935	77916982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_77874204_77874841_77874952_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710
59466	chr11	-	2573	4	FSM	ENSMUSG00000044367.8	ENSMUST00000060010.3	2531	4	-47	5	23	-5	multi-exon	FALSE	canonical	3	11	junction_2	1.24721912892465	64	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAGGTCTGATGGTCAAG	NA	False	NA	NA	False	NA	NA	NA	70111867	70107619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70108748_70109418_70110157_70111020_70111165_70111304
59467	chr19	-	1686	15	ISM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	457	20	-10	-1	3prime_fragment	FALSE	canonical	3	83	junction_4	10.1992896911541	86	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCGGCTGTTAAGGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	5537973	5532879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789
59468	chr2	+	1983	7	FSM	ENSMUSG00000026856.15	ENSMUST00000113612.10	1958	7	-27	2	-27	-2	multi-exon	FALSE	canonical	3	5	junction_5	126.441027096957	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGAGCATACATTA	NA	False	NA	NA	False	NA	NA	NA	30282400	30290537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287479_30287570_30289153
59469	chr13	+	1925	4	FSM	ENSMUSG00000097709.9	ENSMUST00000186610.7	630	4	-91	-1204	-17	1184	multi-exon	FALSE	canonical	3	8	junction_3	9.84321537348893	19	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCAAGTACTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	3528212	3540467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3528391_3529908_3530002_3535048_3535221_3538985
59470	chr19	-	2008	14	NIC	ENSMUSG00000024926.11	novel	2154	14	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_10	117.018432776497	379	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3611	False	NA	NA	False	NA	NA	NA	5660094	5653043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5659013_5659263_5659401_5659490_5659560_5659879_5659947_5660045
59473	chr9	+	2909	6	Antisense	novelGene_ENSMUSG00000032262.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	109	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGCCACGAGCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	83660804	83688272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_83662866_83665191_83665319_83667089_83667262_83670322_83670403_83672029_83672218_83687991
59475	chr13	-	1151	8	NIC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	25	-26	combination_of_known_splicesites	FALSE	canonical	3	6	junction_6	120.75105103696	561	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGCATTATTAACTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100912382	100896207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100909233_100909290_100912194
59476	chr13	-	1375	10	NNC	ENSMUSG00000003062.14	novel	1128	8	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	396.115427746466	9	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAGCTGTCATGCCCCTG	NA	False	NA	NA	False	NA	NA	NA	19579929	19549129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_19549516_19549601_19549725_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19578101_19578205_19579873
59477	chr6	+	1533	6	NIC	ENSMUSG00000055912.9	novel	1546	8	NA	NA	-43	-6	intron_retention	FALSE	canonical	3	98	junction_4	14.7594037819961	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTCTGCAGTGTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	72333165	72336739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335740_72335988
59478	chr3	-	1693	8	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	-11	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	268.571732522624	1	92	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTTAAGTAATTATAAACA	NA	False	NA	NA	False	NA	NA	NA	131065684	131027085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042076_131042223_131043451_131043581_131065524
59479	chr5	+	1397	8	NNC	ENSMUSG00000029304.15	novel	1456	7	NA	NA	5	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	2917.94264256618	1	83	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAAGGAGTCTGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	104582991	104588910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104583115_104584240_104584305_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094_104588703_104588749
59481	chr13	-	2332	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	17	14	1	-14	multi-exon	FALSE	canonical	3	59	junction_2	5.5	58	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAATTGGTTATCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	19803957	19775889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_19777519_19778616_19778826_19803463
59482	chr6	+	1663	5	NIC	ENSMUSG00000069678.11	novel	918	9	NA	NA	19	3	intron_retention	FALSE	canonical	3	182	junction_2	7.08872343937891	64	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCACTTTTCATCTTCCTT	125	False	NA	NA	False	NA	NA	NA	83055345	83057831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83055982_83056096_83056250_83056414_83056487_83056620_83057122_83057530
59483	chr14	-	1318	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5090	-4309	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	272	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTATGAGTTGTTCTT	1962	False	NA	NA	False	NA	NA	NA	51040099	51035570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51036656_51039866
59484	chr10	-	718	3	ISM	ENSMUSG00000025350.16	ENSMUST00000149961.2	619	4	689	-54	122	54	3prime_fragment	FALSE	canonical	0	0	junction_1	1	1	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGGCCCACTACGGGGAA	NA	False	NA	NA	False	NA	NA	NA	128754452	128750039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128750168_128753748_128754008_128754121
59486	chr8	-	2291	6	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	452	198	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	57.7982698702997	2	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTTAGTGCCTCCCAT	NA	False	NA	NA	False	NA	NA	NA	70077744	70063309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70064481_70064549_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70077727
59487	chr4	-	1020	2	NIC	ENSMUSG00000046133.4	novel	913	3	NA	NA	10	-28	intron_retention	FALSE	canonical	3	233	junction_1	0	1060	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGGTGCACAGCTTTGC	NA	False	NA	NA	False	NA	NA	NA	101750976	101747244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_101748198_101750909
59488	chrX	+	890	7	Antisense	novelGene_ENSMUSG00000031320.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	50	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGACTCGCCTTCTTCCGG	NA	False	NA	NA	False	NA	NA	NA	101228547	101232925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_101228735_101229102_101229253_101229990_101230171_101230959_101231068_101231442_101231606_101231897_101231977_101232902
59489	chr17	+	1150	1	Intergenic	novelGene_232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTCATTGTCCCGACGG	NA	False	NA	NA	False	NA	NA	NA	40154915	40156065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154900_40156100
59490	chr7	-	1774	9	NNC	ENSMUSG00000039194.17	novel	2142	9	NA	NA	-120	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	6.8818148042504	1	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTTTCATGATGAACTT	NA	False	NA	NA	False	NA	NA	NA	79036473	79024617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79025467_79025644_79025711_79026974_79027134_79029706_79029886_79031380_79031586_79033359_79033489_79033681_79033711_79034406_79034528_79036436
59491	chr19	+	1159	3	Intergenic	novelGene_1261	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGTCTACATACAGAT	NA	False	NA	NA	False	NA	NA	NA	41513702	41515408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41514223_41514725_41514995_41515038
59492	chr13	-	907	7	ISM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	1881	3232	1850	0	3prime_fragment	FALSE	canonical	3	464	junction_5	48.4790905671942	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGTTTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	36088461	36080686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401
59493	chr4	+	1728	9	ISM	ENSMUSG00000035517.18	ENSMUST00000102929.2	3716	17	33187	8628	15257	-8628	internal_fragment	FALSE	canonical	0	0	junction_3	3.20156211871642	2	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTACGCAGCCAAAGTGGA	4958	False	NA	NA	False	NA	NA	NA	46005419	46026133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_46005701_46007454_46007642_46010789_46010902_46013065_46013269_46016868_46017004_46018529_46018617_46020804_46020940_46023394_46023506_46025656
59494	chr17	+	1009	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	8	9	8	0	multi-exon	FALSE	canonical	3	348	junction_1	48.8287824955732	1391	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7203	False	NA	NA	False	NA	NA	NA	26094482	26096134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
59495	chr19	-	1449	6	NNC	ENSMUSG00000024953.18	novel	1262	6	NA	NA	-296	-5	intron_retention	FALSE	canonical	0	0	junction_4	203.615912934132	7	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACCACTGGTACAGGGT	NA	False	NA	NA	False	NA	NA	NA	6887770	6884078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6884985_6885396_6885485_6886826
59496	chr14	+	1365	2	Genic_Genomic	ENSMUSG00000114902.2	novel	864	1	NA	NA	-1700	152	multi-exon	FALSE	canonical	2	2	junction_1	0	1	51	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACCTGTTGCTTAGAAGT	NA	False	NA	NA	False	NA	NA	NA	61794546	61797262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_61794890_61796240
59498	chr8	+	987	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109733.8	1590	6	86	517	-4	6	multi-exon	FALSE	canonical	3	752	junction_1	1259.55458793972	85	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85696481	85700946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85696638_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
59499	chr16	+	1258	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231913.2	1230	5	-28	0	2	0	multi-exon	FALSE	canonical	3	30	junction_4	45.9292934846597	146	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	97798535	97817956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97817041
59500	chr10	+	2059	11	FSM	ENSMUSG00000004931.12	ENSMUST00000057798.9	2106	11	37	10	-12	0	multi-exon	FALSE	canonical	3	174	junction_1	25.7441255435099	82	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1357	False	NA	NA	False	NA	NA	NA	81104042	81109070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
59501	chr14	-	1947	1	Antisense	novelGene_ENSMUSG00000021767.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGCAGAGAGAAGGAGA	NA	False	NA	NA	False	NA	NA	NA	21571002	21569055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21569100_21571000
59502	chr6	+	1226	5	ISM	ENSMUSG00000030116.15	ENSMUST00000148517.8	1506	10	8273	5	-643	-5	3prime_fragment	FALSE	canonical	3	18	junction_1	53.3479146733966	599	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAAGCTCACGGGCA	7088	False	NA	NA	False	NA	NA	NA	122498814	122506244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
59504	chr19	+	2775	10	FSM	ENSMUSG00000025231.18	ENSMUST00000118440.3	2681	10	-116	22	-8	-22	multi-exon	FALSE	canonical	3	63	junction_6	13.1101694577102	8	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCCCACTTGGTAACGT	NA	False	NA	NA	False	NA	NA	NA	46385348	46465371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946
59506	chr8	-	340	1	Antisense	novelGene_ENSMUSG00000031749.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGCCCAGGTTAGTTTGA	NA	False	NA	NA	False	NA	NA	NA	111699143	111698803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_111698800_111699100
59507	chr2	-	1424	3	NNC	ENSMUSG00000027079.16	novel	1912	3	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	149.5	2	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGTTGGTATGATTCTT	NA	False	NA	NA	False	NA	NA	NA	84557631	84553470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84554562_84556292_84556501_84557506
59508	chr10	+	948	12	NNC	ENSMUSG00000078427.4	novel	953	12	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1520.20222121546	362	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTGTTTTATTAGGT	NA	False	NA	NA	False	NA	NA	NA	128657792	128713493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
59510	chr6	+	657	4	NNC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	0	-45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	327.626141949767	7	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAGACAAGCCCTCCAGA	1362	False	NA	NA	False	NA	NA	NA	124807197	124809357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124807237_124807465_124807614_124808230_124808452_124809108
59511	chr9	+	800	3	NNC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	-2689	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	923.5	13	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAATGAATGATGTAAT	NA	False	NA	NA	False	NA	NA	NA	54499688	54511226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54499748_54508418_54508499_54510565
59512	chr12	-	1588	5	NNC	ENSMUSG00000020962.15	novel	6064	9	NA	NA	49	11851	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	404.550676677224	93	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACTTTATAGATATTATG	-3	True	NA	NA	False	NA	NA	NA	91556734	91541547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_91542566_91552148_91552253_91553473_91553576_91556308_91556412_91556473
59513	chr17	-	1917	8	FSM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	22	0	-13	0	multi-exon	FALSE	canonical	3	258	junction_3	15.727267365169	161	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	78725538	78685313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
59514	chr7	-	2841	9	ISM	ENSMUSG00000030733.11	ENSMUST00000205440.2	3089	11	2007	5	-15	0	3prime_fragment	FALSE	canonical	3	197	junction_2	37.3528362376942	66	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGATGGCTGTGGCTGAT	9835	False	NA	NA	False	NA	NA	NA	126072255	126066170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126066946_126067121_126067222_126067644_126067814_126067927_126068140_126068296_126068501_126070293_126070470_126070566_126070659_126070871_126070974_126071244
59516	chr8	+	654	1	ISM	ENSMUSG00000041308.7	ENSMUST00000212524.2	9945	7	77816	5495	77417	1039	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTATGTGGAATCTGAAC	NA	False	NA	NA	False	NA	NA	NA	107740197	107740851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107740200_107740900
59517	chr5	-	412	1	FSM	ENSMUSG00000067719.6	ENSMUST00000088299.6	309	1	1	-104	1	104	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	24786859	24786447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24786400_24786900
59519	chr17	-	1822	7	NNC	ENSMUSG00000083534.2	novel	1034	5	NA	NA	134	1838	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	59.6082115894185	175	45	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCATGTTGGGTATTG	NA	False	NA	NA	False	NA	NA	NA	37282154	37278248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_37278611_37278969_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732
59520	chr7	+	1422	5	NIC	ENSMUSG00000055629.6	novel	3076	16	NA	NA	-5	-9	intron_retention	FALSE	canonical	3	192	junction_2	15.6584641647896	21	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTGACTTGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	140650182	140652304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
59523	chr14	+	2854	3	NNC	ENSMUSG00000093452.5	novel	4375	5	NA	NA	18666	16464	intron_retention	FALSE	non_canonical	0	0	junction_1	0	61	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAAGCCCTCACTCCTC	NA	False	NA	NA	False	NA	NA	NA	55310069	55329794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55310525_55310672_55312741_55329463
59524	chr10	+	1786	6	FSM	ENSMUSG00000019883.12	ENSMUST00000160399.8	1845	6	62	-3	-53	3	multi-exon	FALSE	canonical	3	12	junction_1	32.6643536596088	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTATGTCCATTCCAGAAT	NA	False	NA	NA	False	NA	NA	NA	29189223	29221559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_29189294_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
59525	chr1	+	700	10	NIC	ENSMUSG00000053332.14	novel	557	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_6	1090.95144792442	66	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
59526	chr18	-	1000	6	NIC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	-6	-296	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	198.140354294626	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTTTCAAAACGTACTG	6759	False	NA	NA	False	NA	NA	NA	74340856	74329845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74340664
59527	chr10	-	1388	7	Fusion	ENSMUSG00000040521.12_ENSMUSG00000080115.4	novel	1206	6	NA	NA	-360	0	multi-exon	FALSE	canonical	3	15	junction_6	461.08811522311	68	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGTGAGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	126877742	126858200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126876856_126876969_126877575
59528	chr15	-	3288	20	FSM	ENSMUSG00000052560.16	ENSMUST00000064391.12	3366	20	79	-1	18	0	multi-exon	FALSE	canonical	0	0	junction_15	2.20676371507754	17	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGCCTTATGTGTATT	NA	False	NA	NA	False	NA	NA	NA	90563556	90371684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_90373379_90381267_90381342_90384087_90384146_90385613_90385717_90393697_90393826_90400110_90400293_90406110_90406158_90424434_90424497_90425459_90425514_90436176_90436253_90452451_90452494_90453662_90453768_90456147_90456252_90469080_90469145_90486015_90486093_90499313_90499354_90503834_90503939_90532780_90532828_90533445_90533487_90563370
59531	chr11	-	1908	9	NNC	ENSMUSG00000002052.7	novel	3856	19	NA	NA	10349	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	183.915019438326	2	75	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGCGCTTGCCGAGGCC	NA	False	NA	NA	False	NA	NA	NA	78104163	78097855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78098596_78098875_78099078_78099555_78099845_78099927_78100023_78100326_78100363_78102622_78102741_78102904_78103023_78103494_78103734_78104092
59532	chr5	-	1990	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	99	0	-47	0	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	42	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	3843	False	NA	NA	False	NA	NA	NA	31250860	31243449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
59533	chr14	+	3371	8	FSM	ENSMUSG00000034532.10	ENSMUST00000224629.2	3781	8	94	316	-20	-316	multi-exon	FALSE	canonical	2	16	junction_5	3.88087934491604	56	72	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGCTGTTATTGTCTG	2632	False	NA	NA	False	NA	NA	NA	65504160	65561104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_65504233_65508148_65508285_65524580_65524617_65531232_65531440_65532841_65533007_65536634_65536865_65540548_65540652_65558682
59534	chr9	-	1983	18	Antisense	novelGene_ENSMUSG00000042185.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGGTACGCGCACGTTC	NA	False	NA	NA	False	NA	NA	NA	31321204	31297492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_31297562_31300167_31300346_31303258_31303463_31306000_31306134_31307621_31307793_31308330_31308428_31309009_31309090_31309855_31309934_31310440_31310626_31311234_31311343_31311871_31311998_31312231_31312309_31313362_31313430_31313528_31313575_31314312_31314378_31316840_31316958_31320574_31320692_31321139
59535	chr1	+	2064	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	56	46	56	-46	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	2	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTATAAGATCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	136343064	136367850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
59536	chr7	-	1027	7	NIC	ENSMUSG00000053291.16	novel	1192	8	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	262.193312907353	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCGGCCTCTGTCATTC	NA	False	NA	NA	False	NA	NA	NA	26878239	26867850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26878151
59538	chr10	-	1668	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	223	0	-8	0	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	534	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9881	False	NA	NA	False	NA	NA	NA	81463408	81457620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
59539	chr3	-	1409	11	NNC	ENSMUSG00000000339.15	novel	1594	11	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	95.7104487503846	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	116301696	116282611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301617
59540	chr16	+	2379	14	FSM	ENSMUSG00000023341.16	ENSMUST00000188251.7	2421	14	2	40	0	-39	multi-exon	FALSE	canonical	0	0	junction_2	1.87477809337753	21	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGCCTGTTGCATTCCT	NA	False	NA	NA	False	NA	NA	NA	97337282	97362060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_97337374_97339817_97339930_97345667_97345861_97346811_97346950_97347524_97347680_97347946_97348086_97348537_97348737_97352096_97352176_97352595_97352719_97353123_97353267_97357160_97357320_97357801_97357879_97359719_97359969_97361538
59541	chr12	+	1862	1	FSM	ENSMUSG00000075707.7	ENSMUST00000173014.3	2030	1	162	6	-30	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	68	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGATTGCCTTTGGTCCGT	NA	False	NA	NA	False	NA	NA	NA	110245663	110247525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110245700_110247500
59546	chr2	-	4091	22	Intergenic	novelGene_2697	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	32	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCACAGACTGCCCCGC	7218	False	NA	NA	False	NA	NA	NA	120527677	120459614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_120459751_120461902_120461972_120464651_120464774_120495363_120495491_120496958_120497035_120498481_120498594_120501557_120501628_120504080_120504155_120508393_120508461_120509830_120509930_120510286_120510499_120510648_120510745_120513202_120513280_120514150_120514224_120515334_120515515_120518197_120518251_120518562_120518700_120519220_120519307_120519391_120519496_120523158_120523352_120523811_120524285_120526222
59547	chr7	+	2997	1	ISM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	109884	1	19934	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	32	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTACTTAGCATTGTGTTT	6343	False	NA	NA	False	NA	NA	NA	97338987	97341984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_97339000_97342000
59548	chrX	-	1000	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	154	3	77	-3	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537475	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
59552	chr5	+	2287	9	NIC	ENSMUSG00000007207.11	novel	2167	10	NA	NA	-26	-9	intron_retention	FALSE	canonical	3	9	junction_4	7.8411972937811	75	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATCTGTAGTGAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	135052387	135079944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135052465_135065979_135066058_135066329_135066430_135070090_135070166_135070784_135071072_135071446_135071521_135074450_135074589_135077764_135077959_135078680
59553	chr7	-	2007	12	Antisense	novelGene_ENSMUSG00000003437.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGACTTGCAGCTCCCGCTC	NA	False	NA	NA	False	NA	NA	NA	28098782	28092436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_28092689_28094446_28094559_28094840_28095119_28095193_28095298_28095376_28095482_28095557_28095623_28095700_28095810_28096031_28096152_28096245_28096372_28097867_28097984_28098086_28098173_28098248
59554	chr5	+	2568	1	Genic_Genomic	ENSMUSG00000019054.14	novel	NA	NA	NA	NA	-1376	-11491	mono-exon	FALSE	NA	NA	NA	NA	NA	11	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCCATCTACAGGCCCAA	2675	False	NA	NA	False	NA	NA	NA	136980752	136983320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_136980800_136983300
59555	chr2	+	3472	4	ISM	ENSMUSG00000026743.17	ENSMUST00000153279.2	651	6	-243	24423	-45	20213	5prime_fragment	FALSE	canonical	3	26	junction_3	72.0061725749181	13	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATTAATTTATTTTGTG	4597	False	NA	NA	False	NA	NA	NA	18069401	18090279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18087321
59559	chr9	+	3332	6	Antisense	novelGene_ENSMUSG00000002028.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	37	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAACAAAGGAAAATTATT	NA	False	NA	NA	False	NA	NA	NA	44754082	44764305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44754211_44754651_44754719_44756684_44756921_44758149_44758332_44758703_44761354_44764236
59560	chr19	-	1415	3	Genic_Genomic	ENSMUSG00000095993.2	novel	168	1	NA	NA	-16453	560	multi-exon	FALSE	canonical	2	4	junction_1	19	6	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATATTTTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	61301960	61284779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_61285953_61287295_61287423_61301845
59561	chr8	+	3194	2	NNC	ENSMUSG00000031792.16	novel	527	2	NA	NA	-1985	2	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTGTCTTATTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	96069796	96074137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96071996_96073142
59562	chr13	+	1259	5	Antisense	novelGene_ENSMUSG00000021720.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGAGGCCGGCTCCAGAGA	NA	False	NA	NA	False	NA	NA	NA	105383170	105430805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_105383206_105386117_105387075_105388758_105388855_105407411_105407550_105430772
59563	chr16	+	1687	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53038	928	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	138	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTCTCCTCTCCCTAGTC	6147	False	NA	NA	False	NA	NA	NA	8951046	8956236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_8951217_8953545_8953645_8954818
59565	chr17	+	1173	6	NIC	ENSMUSG00000023967.10	novel	884	6	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	428.320720955688	3820	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGTGGTCAGTGCTTAGA	NA	False	NA	NA	False	NA	NA	NA	46421935	46439835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46422056_46428865_46428898_46433649_46433758_46435901_46436340_46436568_46436639_46439430
59566	chrX	-	1355	10	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	940.475818632302	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	72974465	72965728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973282_72973460_72973608_72973687_72974013_72974124_72974319
59567	chr15	+	534	1	FSM	ENSMUSG00000116508.2	ENSMUST00000231106.2	2459	1	8	1917	8	-1917	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAGAGCCTATCACATAC	NA	False	NA	NA	False	NA	NA	NA	83056558	83057092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_83056600_83057100
59568	chr15	+	1452	1	FSM	ENSMUSG00000116508.2	ENSMUST00000231106.2	2459	1	638	369	638	-369	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACTGAACTGTCCAGAGG	NA	False	NA	NA	False	NA	NA	NA	83057188	83058640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_83057200_83058600
59569	chr15	-	3307	7	NNC	ENSMUSG00000022305.14	novel	4109	7	NA	NA	-8	-686	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	16.7597401199687	1	99	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCTACTATGCATTACAT	NA	False	NA	NA	False	NA	NA	NA	39807110	39734684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_39736275_39739482_39739600_39741202_39742296_39743515_39743719_39748401_39748538_39767934_39767992_39806999
59570	chr3	-	1066	7	NNC	ENSMUSG00000028029.12	novel	1126	7	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	338.041746271407	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTGCTCATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	132389609	132366259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_132366503_132373145_132373315_132377763_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
59571	chr17	-	1369	7	NIC	ENSMUSG00000023942.16	novel	1062	10	NA	NA	3	-28	combination_of_known_junctions	FALSE	canonical	2	116	junction_6	884.011202166328	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCGACAGGAGAGGAGCCAA	NA	False	NA	NA	False	NA	NA	NA	45906438	45899320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45906407
59572	chr7	-	1359	14	NNC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	-4049	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	16.4572244526953	1	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGACCTCTCCTGGCTCTCT	6320	False	NA	NA	False	NA	NA	NA	44843539	44833103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837747_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373_44839452_44842599_44842651_44842882_44843001_44843383
59573	chr2	+	1339	5	FSM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	0	3	0	-3	multi-exon	FALSE	canonical	3	175	junction_1	15.4495145554804	416	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATACTCGCCCTTACCTT	7279	False	NA	NA	False	NA	NA	NA	125994060	126007193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689_126001949_126006646
59574	chr4	+	1176	10	FSM	ENSMUSG00000028601.19	ENSMUST00000052999.13	1307	10	131	0	50	0	multi-exon	FALSE	canonical	3	713	junction_3	43.9463758530471	137	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	NA	False	NA	NA	NA	108022764	108036505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
59575	chr10	+	2111	11	Antisense	novelGene_ENSMUSG00000039531.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAGAGAGGGTAGAGATC	NA	False	NA	NA	False	NA	NA	NA	33795160	33827208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_33795371_33803395_33803616_33804005_33804158_33805814_33805978_33806146_33806340_33811083_33811254_33816153_33816275_33819644_33819759_33824926_33825494_33825742_33825860_33827124
59576	chr1	+	803	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	-12	2	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	258	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
59577	chr2	+	1238	8	NIC	ENSMUSG00000001999.16	novel	772	7	NA	NA	-1341	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	64.0153042925945	4	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	NA	False	NA	NA	False	NA	NA	NA	126920855	126939004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_126920998_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
59578	chr4	-	1504	7	NNC	ENSMUSG00000000409.15	novel	2185	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	50.9825678268781	19	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	NA	False	NA	NA	NA	129450035	129442141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129449879
59579	chr15	-	431	1	Intergenic	novelGene_3363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCCTGGAACTCAACGATG	NA	False	NA	NA	False	NA	NA	NA	97277286	97276855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97276900_97277300
59582	chr7	-	2038	1	Antisense	novelGene_ENSMUSG00000078779.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	89	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCACTGTGAGACTTCTGA	NA	False	NA	NA	False	NA	NA	NA	27556100	27554062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_27554100_27556100
59583	chr17	+	2500	4	FSM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	30	4	-4	-4	multi-exon	FALSE	canonical	3	12	junction_3	7.40870359029762	29	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTAAAAAAAATAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	44389765	44397446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_44389874_44391537_44392402_44393634_44393812_44396095
59584	chr4	-	1459	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	-12	1102	-3	-100	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	297	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	62389136	62371970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
59585	chr2	+	1166	4	NIC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	33	1	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	74.5534856477028	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCGCCCTTACCTTTCGA	7312	False	NA	NA	False	NA	NA	NA	125994093	126007197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_125994135_125996465_125996781_126001689_126001949_126006646
59586	chr16	-	1141	5	FSM	ENSMUSG00000063445.15	ENSMUST00000074970.8	1155	5	12	2	4	-2	multi-exon	FALSE	canonical	0	0	junction_1	77.9723508687535	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAAAGCTTCCTTAATGG	4852	False	NA	NA	False	NA	NA	NA	4536964	4530160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4530416_4531503_4531695_4532280_4532531_4534160_4534400_4536758
59587	chr1	+	3178	11	Intergenic	novelGene_376	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATCTGTAAAGAGAAGATAA	NA	False	NA	NA	False	NA	NA	NA	63097162	63144915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_63098310_63100202_63100357_63101194_63101406_63104856_63104997_63107342_63107453_63113480_63113701_63118106_63118220_63124825_63125554_63132436_63132600_63132798_63132890_63144814
59588	chr11	-	1179	5	FSM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	26	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	30.2861354418156	550	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCATGGCAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	120440527	120433713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
59589	chr5	+	1761	8	ISM	ENSMUSG00000033773.15	ENSMUST00000112655.8	2686	12	-4	21882	-4	14052	5prime_fragment	FALSE	canonical	3	138	junction_1	9.29559913428425	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAAAGCTAAGCACAGC	NA	False	NA	NA	False	NA	NA	NA	107745635	107768906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687
59590	chr11	-	1238	8	NNC	ENSMUSG00000018697.15	novel	1992	9	NA	NA	18409	7088	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	172.921475631842	1	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTAGGAATTTTTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	84363967	84326246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_84326726_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877
59591	chr5	+	1803	2	FSM	ENSMUSG00000036599.11	ENSMUST00000043050.9	2331	2	42	486	17	-486	multi-exon	FALSE	canonical	3	68	junction_1	0	189	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCATTCCTGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	140491346	140510993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_140491452_140509295
59592	chr5	+	1259	6	NNC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	19	419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	77.1310572986005	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTACTAAGTGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	123366339	123387009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384304_123386379
59593	chr9	+	4219	22	ISM	ENSMUSG00000038664.17	ENSMUST00000042824.13	15153	78	1	92472	1	-35996	5prime_fragment	FALSE	canonical	2	7	junction_16	2.83083122813369	10	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGCCAGAAGATGAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	66257808	66323585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_66257904_66279067_66280024_66283598_66283695_66292274_66292470_66293880_66294193_66295442_66295540_66296036_66296181_66298641_66298770_66301941_66302087_66302209_66302382_66303917_66304053_66304534_66304701_66305119_66305246_66306539_66306762_66307049_66307203_66307328_66307462_66309805_66309998_66315265_66315488_66318297_66318472_66321356_66321472_66321560_66321682_66323465
59594	chr16	+	889	5	NIC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	0	-2599	combination_of_known_splicesites	FALSE	canonical	1	23	junction_2	615.449987813795	4	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	NA	False	NA	NA	False	NA	NA	NA	34842799	34926948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_34843006_34846194_34846313_34920125_34920248_34922315_34922495_34926684
59596	chr7	-	1232	5	NNC	ENSMUSG00000036835.8	novel	488	4	NA	NA	-1737	-979	intron_retention	FALSE	non_canonical	0	0	junction_1	0	59	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCCAACGCGCCTGCTC	NA	False	NA	NA	False	NA	NA	NA	30264789	30262770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30263042_30263351_30263422_30263506_30264032_30264126_30264228_30264524
59597	chr3	+	2123	2	ISM	ENSMUSG00000027703.17	ENSMUST00000108265.3	2092	6	86	20561	86	-20561	5prime_fragment	FALSE	canonical	3	7	junction_1	0	24	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGCAACAAAGACTATGA	NA	False	NA	NA	False	NA	NA	NA	30702120	30705887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_30702410_30704053
59598	chr10	-	1169	7	NNC	ENSMUSG00000061904.13	novel	1483	7	NA	NA	250	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2124.24470237201	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959567	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953180_90953905_90954072_90954560_90954743_90955388_90955514_90957796_90957906_90959419
59599	chr12	+	887	5	ISM	ENSMUSG00000006356.11	ENSMUST00000197396.5	647	6	694	-531	-57	-6	3prime_fragment	FALSE	canonical	3	743	junction_3	16.9908063375462	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAAGACCCAGTGTCGTG	9415	False	NA	NA	False	NA	NA	NA	113107648	113109120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
59600	chr6	-	1478	1	Antisense	novelGene_ENSMUSG00000029534.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAAAGGCAAGTACAGGA	NA	False	NA	NA	False	NA	NA	NA	17828582	17827104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_17827100_17828600
59601	chr7	+	2467	15	ISM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	-13	79184	-1	-16	5prime_fragment	FALSE	canonical	3	73	junction_1	23.371555186524	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATATTGGTCTAGAATA	NA	False	NA	NA	False	NA	NA	NA	82297835	82347876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086
59604	chr19	-	2130	15	FSM	ENSMUSG00000005986.17	ENSMUST00000056888.13	2139	15	9	0	9	0	multi-exon	FALSE	canonical	2	3	junction_3	4.70128076340124	42	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGCTGTCCTGCGTGGT	869	False	NA	NA	False	NA	NA	NA	4333154	4320207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4320578_4320821_4320914_4320993_4321158_4321246_4321364_4321469_4321628_4322597_4322729_4322827_4322890_4323048_4323131_4323563_4323631_4330564_4330755_4330964_4331109_4331190_4331237_4331945_4332071_4332196_4332333_4332908
59605	chr8	+	2057	14	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	-3	-390	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	142.995758616291	1	90	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCATTCCAGTTCCTGC	2375	False	NA	NA	False	NA	NA	NA	70495680	70524607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70495731_70501158_70501324_70505249_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
59606	chr17	-	3711	10	ISM	ENSMUSG00000038146.9	ENSMUST00000087723.5	8016	33	23444	5	-5583	-5	3prime_fragment	FALSE	canonical	3	69	junction_7	8.72770528295799	85	51	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGTGTCTGGTTTCTGT	7040	False	NA	NA	False	NA	NA	NA	32362382	32339798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_32341835_32343255_32343354_32351175_32351324_32352361_32352667_32354358_32354522_32356789_32356875_32358104_32358328_32358618_32358774_32360190_32360524_32362217
59607	chr8	+	716	5	FSM	ENSMUSG00000003573.16	ENSMUST00000087467.12	880	5	255	-91	48	91	multi-exon	FALSE	canonical	3	53	junction_4	81.1202810646018	39	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGAATGGAGCACCTTGG	NA	False	NA	NA	False	NA	NA	NA	70735731	70739271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70738945
59608	chr7	+	2414	12	FSM	ENSMUSG00000034867.17	ENSMUST00000186245.7	1926	12	5	-493	0	493	multi-exon	FALSE	canonical	3	240	junction_4	23.6388110621019	63	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTAAGATTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	35285679	35309032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745
59609	chr7	+	517	1	Intergenic	novelGene_2887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACACATCTGGGAGGGGTC	852	False	NA	NA	False	NA	NA	NA	19025265	19025782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_19025300_19025800
59610	chr19	+	2890	7	FSM	ENSMUSG00000024697.5	ENSMUST00000025602.4	3290	7	322	78	322	-78	multi-exon	FALSE	canonical	1	2	junction_2	2.3392781412697	23	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACACCAACGATGATGTG	NA	False	NA	NA	False	NA	NA	NA	16413447	16588106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_16414182_16511076_16511262_16576303_16576459_16580627_16580757_16582326_16582457_16585346_16585501_16586703
59611	chr9	+	2690	7	ISM	ENSMUSG00000032558.20	ENSMUST00000035167.15	5899	27	33493	106	191	-106	3prime_fragment	FALSE	canonical	3	24	junction_2	2.54405625374562	1	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAGTGTAATTGCAA	NA	False	NA	NA	False	NA	NA	NA	103913237	103920911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_103913480_103914530_103914607_103915633_103915762_103916532_103916774_103917820_103917947_103918337_103918454_103919150
59612	chr5	+	2919	11	NNC	ENSMUSG00000028986.13	novel	2966	11	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	17.4172328456618	1	163	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTAAATAGATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	24305637	24365777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333097_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24361887_24362090_24363536_24363635_24364444
59614	chr11	-	1927	3	Antisense	novelGene_ENSMUSG00000043372.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	161	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGGGGGGGAGGTGGAG	NA	False	NA	NA	False	NA	NA	NA	103030723	103024139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_103024247_103024858_103024966_103029010
59617	chrX	-	1252	10	NNC	ENSMUSG00000031371.15	novel	1380	10	NA	NA	88	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	177.161570952118	4	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	NA	False	NA	NA	NA	72502562	72480920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496627_72498472_72498541_72501579_72501696_72502440
59618	chr17	-	978	8	NNC	ENSMUSG00000024436.17	novel	1079	7	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	468.949499043406	59	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGACTCCCTTTGGGCTG	4285	False	NA	NA	False	NA	NA	NA	36227292	36221271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36221469_36221579_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
59619	chrX	-	2232	6	NNC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	297	-4	intron_retention	TRUE	non_canonical	0	0	junction_5	120.150572200052	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100837732	100833957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100834130_100834212_100834891_100835166_100835250_100835786_100835944_100836542_100836911_100836958
59620	chr8	+	1413	7	FSM	ENSMUSG00000031570.18	ENSMUST00000124764.8	1419	7	6	0	3	0	multi-exon	FALSE	canonical	3	21	junction_2	20.3141986469235	126	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	26210093	26214914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
59621	chr2	+	1121	12	NNC	ENSMUSG00000027384.7	novel	1200	11	NA	NA	27	3	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	107.984847421883	63	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATGTTTCCCAGAATTT	NA	False	NA	NA	False	NA	NA	NA	140012976	140045555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_140013175_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140041284_140041381_140044785_140044870_140045207_140045291_140045451
59623	chr12	-	3056	1	ISM	ENSMUSG00000118667.1	ENSMUST00000239525.1	11349	7	24582	12	24582	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	20	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATGCATTCAGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	112741695	112738639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_112738600_112741700
59624	chr15	-	1692	13	Antisense	novelGene_ENSMUSG00000058357.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCGGCGGACACCAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	80853192	80832729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80832898_80836393_80836601_80839819_80839868_80840414_80840488_80844590_80844770_80845560_80845601_80846891_80846979_80847858_80847911_80848072_80848228_80850288_80850393_80851316_80851403_80851792_80851947_80852853
59625	chr5	-	1152	1	Antisense	novelGene_ENSMUSG00000079067.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	51	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTCAAATTGACTGTTT	NA	False	NA	NA	False	NA	NA	NA	84272233	84271081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_84271100_84272200
59626	chr16	-	1152	9	Antisense	novelGene_ENSMUSG00000003234.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	49	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGCTTCTGAACCTTC	NA	False	NA	NA	False	NA	NA	NA	20379566	20370247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20370305_20370394_20370447_20370548_20370635_20370847_20370903_20371007_20371204_20371301_20371326_20378663_20378797_20378931_20379020_20379105
59628	chr17	-	2373	4	Intergenic	novelGene_61	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGACAGTGGTTTTGACC	NA	False	NA	NA	False	NA	NA	NA	17734457	17724946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17725210_17730734_17730805_17731410_17731489_17732495
59629	chr2	-	2655	1	Intergenic	novelGene_2627	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	307	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTTAAACTCCCAGCAAC	NA	False	NA	NA	False	NA	NA	NA	52025883	52023228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_52023200_52025900
59630	chr18	-	1772	9	NIC	ENSMUSG00000063889.17	novel	2662	10	NA	NA	11	79	combination_of_known_junctions	FALSE	canonical	3	12	junction_7	23.685438564654	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGGAATGAGTTCCACAA	187	False	NA	NA	False	NA	NA	NA	3337502	3266877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3267733_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
59631	chr11	+	2113	10	NIC	ENSMUSG00000034706.17	novel	2247	8	NA	NA	55	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.76664435510861	20	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCATCAGTACTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	114627921	114648706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_114628021_114629441_114629585_114631242_114631357_114635126_114635267_114635880_114636004_114641163_114641388_114642611_114642748_114643682_114643830_114645060_114645289_114647947
59632	chr13	+	1380	11	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	24	-7971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	514.720594109076	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTAAGGGGGGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	49835629	49857286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49856953
59633	chr3	+	1989	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	68	0	68	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1960	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4675	False	NA	NA	False	NA	NA	NA	34704621	34706610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34704600_34706600
59634	chr7	+	2262	14	FSM	ENSMUSG00000030729.18	ENSMUST00000084935.11	8834	14	296	6276	2	-4818	multi-exon	TRUE	canonical	2	3	junction_8	2.32557176274323	20	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTTGGATATGAGTCA	NA	False	NA	NA	False	NA	NA	NA	99876896	99921798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_99877242_99899498_99899667_99901391_99901499_99902439_99902525_99904740_99904825_99909090_99909285_99910806_99910997_99911272_99911371_99912117_99912296_99915871_99915966_99916692_99916823_99917323_99917514_99919534_99919669_99921533
59635	chr1	-	998	1	ISM	ENSMUSG00000032666.17	ENSMUST00000044581.14	9559	6	204592	12	35694	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAACAGTTGTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	151761284	151760286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_151760300_151761300
59636	chr12	-	1026	1	Intergenic	novelGene_4429	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGGAACCCTGTCTCGG	NA	False	NA	NA	False	NA	NA	NA	85024001	85022975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_85023000_85024000
59637	chr14	+	942	5	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	7	24058	7	-24051	5prime_fragment	FALSE	canonical	3	648	junction_1	14.6180539060437	91	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACAATCTCAGGCATGTTC	NA	False	NA	NA	False	NA	NA	NA	122419122	122615588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195
59638	chr13	-	1019	1	Genic_Genomic	ENSMUSG00000113591.2	novel	NA	NA	NA	NA	28637	538	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	34268618	34267599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_34267600_34268600
59639	chr6	+	1522	10	NNC	ENSMUSG00000015733.14	novel	2537	10	NA	NA	-10	426	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	580.305666581558	1	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATGCATTTAATGCTTT	9	True	NA	NA	False	NA	NA	NA	17637098	17666111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656411_17657176_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
59641	chr1	-	2810	1	Genic_Genomic	ENSMUSG00000039342.6	novel	NA	NA	NA	NA	56542	1792	mono-exon	FALSE	NA	NA	NA	NA	NA	18	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGCAATGCGCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	72683156	72680346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_72680300_72683200
59642	chr2	+	3532	1	NIC	ENSMUSG00000035268.15	novel	983	3	NA	NA	28572	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	4	79	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTGTGTGACTGGCTTA	NA	False	NA	NA	False	NA	NA	NA	163564529	163568061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_163564500_163568100
59644	chr12	+	2292	7	NNC	ENSMUSG00000048833.10	novel	2155	6	NA	NA	-5	-12	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	38.1357225358762	2	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGTTAAAAGGAATACTG	NA	False	NA	NA	False	NA	NA	NA	80691007	80725116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80691191_80691317_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905
59645	chr1	-	1354	5	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1954	6968	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	39.6169155790806	845	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTAGGAGTTTGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	132206195	132195485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_132196405_132196619_132196718_132202453_132202560_132202761_132202875_132206077
59646	chr6	-	2286	6	NNC	ENSMUSG00000087341.5	novel	1734	7	NA	NA	-5220	-50304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	106	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAATGAGAAGTGGGGC	NA	False	NA	NA	False	NA	NA	NA	108643115	108637597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_108637953_108638120_108638190_108638463_108638572_108639482_108639603_108641436_108642083_108642127
59647	chr5	-	1569	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	-6	10	-6	-10	multi-exon	FALSE	canonical	3	77	junction_2	1.5	247	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTAAAATCGGTAGTGT	6309	False	NA	NA	False	NA	NA	NA	120750660	120747132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_120748028_120749442_120749795_120750338
59648	chr7	-	3096	2	Antisense	novelGene_ENSMUSG00000045598.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	140	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCGGTACAACAGGAACCC	NA	False	NA	NA	False	NA	NA	NA	126837360	126832518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_126832688_126834433
59649	chr4	+	1337	7	NNC	ENSMUSG00000028745.19	novel	1674	9	NA	NA	-1	10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	624.469552678289	18	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGGAAAAAAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	138920231	139019079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989413_139014349_139014406_139015066_139015144_139018313
59650	chr12	+	2326	12	Antisense	novelGene_ENSMUSG00000056770.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	58	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGTGGCGGCGGCGGCCG	NA	False	NA	NA	False	NA	NA	NA	108072857	108145499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_108073937_108074814_108074994_108077494_108077567_108078388_108078475_108079579_108079653_108085364_108085424_108124012_108124269_108124533_108124603_108126478_108126642_108129233_108129327_108131322_108131432_108145411
59651	chr7	-	1826	12	FSM	ENSMUSG00000030846.16	ENSMUST00000106226.9	4451	12	81	2544	61	-10	multi-exon	FALSE	canonical	3	18	junction_10	64.264304450031	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTGTGTACAAAAAACTA	NA	False	NA	NA	False	NA	NA	NA	128063315	128044044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050495_128056659_128056757_128062848
59653	chr2	-	1086	1	Antisense	novelGene_ENSMUSG00000083722.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGGCAACAGTGAGGGC	NA	False	NA	NA	False	NA	NA	NA	38563712	38562626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_38562600_38563700
59655	chr17	+	1388	10	NNC	ENSMUSG00000024082.6	novel	1749	10	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	142.310909847869	40	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGCTGTGAATTAAGTTG	NA	False	NA	NA	False	NA	NA	NA	79244564	79255471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79255207
59657	chr10	-	731	1	NIC	ENSMUSG00000033307.8	novel	544	3	NA	NA	10	-50	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACGGTTCCACCTTCGCT	NA	False	NA	NA	False	NA	NA	NA	75696064	75695333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75695300_75696100
59658	chrX	+	2113	15	Intergenic	novelGene_3924	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	17	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTAGGCCAGGCAATGGG	NA	False	NA	NA	False	NA	NA	NA	48100341	48377119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_48100514_48102010_48102049_48102365_48102462_48107661_48107772_48114039_48114222_48129392_48129513_48140613_48140716_48142585_48142799_48145211_48145444_48151017_48151226_48158508_48158671_48169496_48169629_48257517_48257661_48375720_48375781_48376976
59659	chr19	+	1679	9	NNC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	6	512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	164.753177131732	1	76	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTCTTTGGAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	60800054	60824063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814362_60819217_60819314_60821021_60821117_60823263
59660	chr2	+	1454	5	NIC	ENSMUSG00000027160.17	novel	2070	6	NA	NA	30	-11	combination_of_known_splicesites	FALSE	canonical	2	25	junction_2	204.541407788252	9	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAAGTTTTCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	109848191	109875183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_109848560_109852226_109852360_109870918_109871078_109871605_109871748_109874531
59661	chr6	-	1356	11	NNC	ENSMUSG00000068329.13	novel	2512	7	NA	NA	-2405	-1578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTGGGAAGGCGGAGTC	NA	False	NA	NA	False	NA	NA	NA	83034659	83031705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83031812_83031889_83032027_83032106_83032261_83032493_83032670_83032876_83032947_83033048_83033125_83033496_83033624_83033737_83033868_83033969_83034034_83034240_83034374_83034476
59662	chr15	+	1618	9	FSM	ENSMUSG00000023039.18	ENSMUST00000068904.9	4094	9	-48	2524	-48	0	multi-exon	FALSE	canonical	3	14	junction_1	16.0078105935821	155	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTGCATCGGCTAGCT	NA	False	NA	NA	False	NA	NA	NA	101310234	101325670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101310661_101311849_101312062_101314101_101314163_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
59663	chr4	+	2028	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	53	1129	-16	26	multi-exon	FALSE	canonical	3	35	junction_1	17	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCGATATTTATGTGGTT	1	True	NA	NA	False	NA	NA	NA	5644173	5799972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_5644411_5729570_5729658_5798268
59665	chr2	-	1693	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	42	1614	-25	-9	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	133	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCCCATGGACTCTGAT	NA	False	NA	NA	False	NA	NA	NA	25255652	25251514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
59666	chrX	+	1238	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	3	-1	0	1	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	2	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTCGTTGTTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	36059306	36062461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
59669	chr1	-	1790	3	FSM	ENSMUSG00000042215.9	ENSMUST00000044691.9	1860	3	63	7	-5	-7	multi-exon	FALSE	canonical	3	40	junction_1	4.5	107	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGAACTTCTAGCATTGG	NA	False	NA	NA	False	NA	NA	NA	33796813	33784571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_33786098_33787297_33787408_33796659
59670	chr11	-	465	4	Antisense	novelGene_ENSMUSG00000035530.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCGGGAAGCGAGGGGGCT	NA	False	NA	NA	False	NA	NA	NA	100212360	100210878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_100210963_100211594_100211654_100211771_100211874_100212140
59671	chr14	-	1342	7	NNC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1691.75366771354	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8738	False	NA	NA	False	NA	NA	NA	52341472	52312258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315061_52319280_52319361_52321571_52321872_52341345
59673	chr1	-	2469	1	Antisense	novelGene_ENSMUSG00000026496.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	74	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGGGTTATACACTTTA	NA	False	NA	NA	False	NA	NA	NA	180412315	180409846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180409800_180412300
59675	chr7	-	910	5	NNC	ENSMUSG00000062797.15	novel	2224	5	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	485.677104669347	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATTACATGTGTAACCT	NA	False	NA	NA	False	NA	NA	NA	89590330	89567900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590244
59677	chr18	+	1435	7	NNC	ENSMUSG00000024425.5	novel	838	8	NA	NA	49	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	294.352821174409	1	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCTTTTACTGTAGATT	9193	False	NA	NA	False	NA	NA	NA	38552085	38598234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_38552151_38580737_38580875_38584607_38584696_38585357_38585425_38589107_38589175_38593597_38593704_38597329
59679	chr18	-	1144	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	33	2125	33	-2125	multi-exon	FALSE	canonical	3	1260	junction_1	0	1	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTAGAAAACCTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	37777224	37775668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
59681	chr10	-	2393	2	Antisense	novelGene_ENSMUSG00000000903.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	41	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATTCCCTCAATATAG	3205	False	NA	NA	False	NA	NA	NA	75786738	75783399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_75785445_75786390
59682	chr14	+	2061	1	NIC	ENSMUSG00000021868.8	novel	3637	4	NA	NA	4206	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATAAAATGGCTGTCTCTG	4622	False	NA	NA	False	NA	NA	NA	25698823	25700884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_25698800_25700900
59685	chr15	+	1356	1	Intergenic	novelGene_3216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAACAGAGTTTTATGTTT	NA	False	NA	NA	False	NA	NA	NA	12897257	12898613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_12897300_12898600
59686	chr16	-	3749	1	FSM	ENSMUSG00000119162.1	ENSMUST00000158761.4	133	1	-2867	-749	-2867	749	mono-exon	FALSE	NA	NA	NA	NA	NA	3	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCAGCTTAGATTCAAGA	NA	False	NA	NA	False	NA	NA	NA	43710044	43706295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_43706300_43710000
59687	chr13	+	2109	17	FSM	ENSMUSG00000021610.9	ENSMUST00000022102.9	2340	17	231	0	231	0	multi-exon	FALSE	canonical	3	235	junction_7	20.082544503872	161	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTCTTAACCTCTAAT	NA	False	NA	NA	False	NA	NA	NA	73752355	73768724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_73752519_73753048_73753150_73754340_73754531_73755838_73755988_73757022_73757102_73759262_73759381_73759740_73759836_73760512_73760598_73761776_73761881_73762725_73762792_73763291_73763343_73764081_73764165_73764933_73764969_73765696_73765753_73765837_73765883_73766520_73766637_73768151
59688	chr2	-	3146	25	NNC	ENSMUSG00000027546.16	novel	3729	28	NA	NA	6690	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	95.3478190480633	1	164	18	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAAGGTTGCAGGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	168548143	168476362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168476829_168479420_168479625_168480989_168481048_168481803_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168496032_168496189_168503854_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114
59690	chr4	-	887	5	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	5993	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	380.567585981781	2	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGCCCCATGCTGGTG	9211	False	NA	NA	False	NA	NA	NA	129222444	129203313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129215855_129216033_129216145_129216262_129216488_129216663_129222380
59691	chr12	+	1801	3	NIC	ENSMUSG00000006360.12	novel	1505	4	NA	NA	-164	-14	intron_retention	FALSE	canonical	3	402	junction_2	6	9	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGATCTTTGGAAGTCC	NA	False	NA	NA	False	NA	NA	NA	113115467	113117483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_113117133_113117237_113117285_113117394
59692	chr9	-	1398	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	-40	6	-40	0	multi-exon	FALSE	canonical	3	151	junction_5	120.179865202121	547	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	8073	False	NA	NA	False	NA	NA	NA	106562921	106535950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
59693	chr3	-	951	5	Antisense	novelGene_ENSMUSG00000001416.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	7.36121593216773	1	56	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGCTAAATCTGAAATTT	NA	False	NA	NA	False	NA	NA	NA	88229071	88220873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88220941_88225645_88225830_88227765_88228007_88228314_88228451_88228748
59695	chr4	+	2857	19	ISM	ENSMUSG00000046861.10	ENSMUST00000050067.10	4583	21	1057	1097	1057	731	3prime_fragment	FALSE	canonical	3	56	junction_5	8.53840271875568	45	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAGAATGTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	116853570	116861377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116853651_116853728_116853865_116854110_116854227_116854314_116854429_116854544_116854628_116855573_116855740_116855940_116856023_116856774_116856958_116857085_116857139_116857285_116857351_116857443_116857548_116857793_116857914_116858018_116858109_116859312_116859520_116859706_116859837_116859933_116860009_116860130_116860213_116860315_116860388_116860478
59697	chr18	-	2164	12	NNC	ENSMUSG00000024376.8	novel	540	6	NA	NA	-39	31769	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	71.0336900630042	19	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTAAAAATTCTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	34025066	33978238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_33979333_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34024879
59698	chr13	+	2415	11	NNC	ENSMUSG00000021413.10	novel	2572	17	NA	NA	3206	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	80.3174327278954	1	93	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAACTACTTAATAGGAA	NA	False	NA	NA	False	NA	NA	NA	35079312	35089999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35079440_35079949_35080104_35083088_35083207_35083297_35083439_35083813_35083966_35084346_35084434_35085375_35086115_35086612_35087257_35087512_35087586_35088026_35088073_35089865
59700	chr2	-	787	3	ISM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	37	15	-25	-9	intron_retention	FALSE	canonical	3	1785	junction_1	215.5	278	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTGAGAATAAGGAGCAAG	333	False	NA	NA	False	NA	NA	NA	84501077	84499573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_84499742_84500330_84500461_84500588
59701	chr1	-	993	2	Intergenic	novelGene_354	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCCCACAAGGAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	34208164	34207127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_34207235_34207278
59705	chr15	+	2756	23	NNC	ENSMUSG00000033065.15	novel	2879	23	NA	NA	124	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.8236206237177	1	117	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGTCCCTTTACTCGCAC	1720	False	NA	NA	False	NA	NA	NA	98006470	98030259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029731
59706	chr8	+	1316	13	FSM	ENSMUSG00000039470.16	ENSMUST00000049389.11	3381	13	276	1789	-13	-333	multi-exon	FALSE	canonical	3	62	junction_3	8.82664841387841	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTAAAAGGGAACCATTT	1496	False	NA	NA	False	NA	NA	NA	40877131	40936977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_40877211_40898818_40898846_40900091_40900187_40907538_40907660_40909071_40909142_40909703_40909737_40915128_40915250_40917198_40917332_40920469_40920597_40920951_40921045_40925953_40926067_40927775_40927849_40936746
59708	chr8	+	492	1	ISM	ENSMUSG00000039470.16	ENSMUST00000049389.11	3381	13	61410	9	-15226	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	17	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATGGTTACTTCCGTCTC	NA	False	NA	NA	False	NA	NA	NA	40938265	40938757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_40938300_40938800
59709	chr6	+	1819	1	NIC	ENSMUSG00000057278.9	novel	1055	4	NA	NA	-14	-3380	mono-exon	FALSE	NA	NA	NA	NA	NA	9	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAATTCTGCTATACTA	NA	False	NA	NA	False	NA	NA	NA	86348538	86350357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86348500_86350400
59710	chr7	-	870	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	76	3	-6	2	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTACCAAGGCTGTGAG	7011	False	NA	NA	False	NA	NA	NA	12768658	12765943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
59711	chr2	+	1130	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	-97	1248	-2	1	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	81	18	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	117	False	NA	NA	False	NA	NA	NA	90677519	90695736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
59712	chr2	+	2132	1	ISM	ENSMUSG00000035168.17	ENSMUST00000142573.3	2809	2	35238	11	502	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGATTTTGAAGAAAAA	6451	False	NA	NA	False	NA	NA	NA	59477656	59479788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_59477700_59479800
59713	chr9	-	2325	17	FSM	ENSMUSG00000032554.16	ENSMUST00000035158.16	2571	17	165	81	-6	-81	multi-exon	FALSE	canonical	3	17	junction_12	9.88982273602515	53	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCCCAAACTCCATTCT	NA	False	NA	NA	False	NA	NA	NA	103107478	103086074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_103086278_103087693_103087878_103089010_103089196_103092391_103092457_103093012_103093143_103094561_103094733_103096421_103096455_103097000_103097092_103098091_103098244_103099249_103099428_103100133_103100313_103100782_103100839_103102241_103102375_103103159_103103337_103104036_103104146_103105094_103105268_103107372
59715	chr9	+	1365	13	FSM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	76	6	-20	-6	multi-exon	FALSE	canonical	3	66	junction_7	12.0908022893437	469	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAATGCCGTTGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	69360977	69399071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_69361022_69371741_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
59716	chr4	+	660	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	100	4	-26	-4	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	2602	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTTGTGAGTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	155888077	155893284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
59717	chr2	-	1646	12	NNC	ENSMUSG00000051730.16	novel	968	7	NA	NA	2470	9595	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	85	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAGCCCTTGCGGACAG	3596	False	NA	NA	False	NA	NA	NA	69701924	69691946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_69692053_69693564_69693668_69696543_69696635_69696824_69697007_69697613_69697722_69697793_69697891_69699116_69699201_69700185_69700364_69700729_69700923_69701019_69701174_69701464_69701560_69701669
59718	chr9	+	824	1	NIC	ENSMUSG00000011958.18	novel	676	6	NA	NA	35	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGATCTTCCCAAACCC	NA	False	NA	NA	False	NA	NA	NA	69905548	69906372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_69905500_69906400
59719	chr7	-	2920	2	Antisense	novelGene_ENSMUSG00000048078.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	21	68	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCTATTAATTGTGAATAC	NA	False	NA	NA	False	NA	NA	NA	96545371	96530163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_96533011_96545298
59720	chr9	-	1752	9	FSM	ENSMUSG00000006675.11	ENSMUST00000006853.11	1841	9	85	4	-2	-4	multi-exon	FALSE	canonical	2	23	junction_3	12.7273082385868	69	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGCGCCCGCTTGGGGGA	NA	False	NA	NA	False	NA	NA	NA	108474781	108456064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108460045_108460143_108460840_108461032_108474097_108474180_108474406
59722	chrX	-	1174	8	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	-1	6992	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_6	32.4389536558397	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGAGAGCTGCACTCGG	NA	False	NA	NA	False	NA	NA	NA	49724139	49697279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49697485_49697563_49697692_49701581_49701728_49704237_49704393_49715313_49715387_49716083_49716128_49719767_49719873_49723821
59723	chr11	-	2871	1	ISM	ENSMUSG00000020393.17	ENSMUST00000020662.15	4856	9	67136	0	44026	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGTGAGGCCAGGCTGT	7823	False	NA	NA	False	NA	NA	NA	5144422	5141551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5141600_5144400
59724	chr18	+	518	2	Genic_Genomic	ENSMUSG00000058064.7	novel	534	1	NA	NA	-21	51	multi-exon	FALSE	canonical	0	0	junction_1	0	15	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAAAAATGCTATCCAA	NA	False	NA	NA	False	NA	NA	NA	15965829	15966435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_15966019_15966106
59725	chr2	-	2944	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-2	2130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.6985086167643	1	145	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGAGTTGCTGTTGTCCC	NA	False	NA	NA	False	NA	NA	NA	156681742	156672838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156673630_156673691_156675347_156679742_156679834_156680337_156680457_156681454
59726	chr16	-	1128	1	NIC	ENSMUSG00000022519.15	novel	366	4	NA	NA	56	-43133	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGCCCTGATGGAATTT	NA	False	NA	NA	False	NA	NA	NA	4359622	4358494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4358500_4359600
59730	chr4	-	1125	9	NIC	ENSMUSG00000028684.15	novel	1489	10	NA	NA	-3	4	combination_of_known_junctions	FALSE	canonical	2	9	junction_6	116.039594535658	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATGTTCTTTTGTAAAGG	NA	False	NA	NA	False	NA	NA	NA	116851557	116847409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850584_116850665_116850781_116850895_116851527
59731	chr8	-	1853	7	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	26	-1753	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	45.0693909432999	1	63	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTGCCCCTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	26484135	26472384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26473492_26473563_26473673_26473934_26474034_26476273_26476561_26477522_26477669_26479685_26479770_26484114
59732	chr2	+	1421	2	NNC	ENSMUSG00000017764.3	novel	851	3	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCCCCACTCGTGTCTTG	8854	False	NA	NA	False	NA	NA	NA	164664932	164668782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164665121_164667549
59733	chr19	+	1534	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	17	6	-2	-6	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	145	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGAGTCCTGGCTGAGGT	NA	False	NA	NA	False	NA	NA	NA	5524732	5531875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
59734	chr10	-	1049	1	Intergenic	novelGene_3396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACTCAAGTGGAGATTTT	NA	False	NA	NA	False	NA	NA	NA	13137503	13136454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_13136500_13137500
59735	chr8	-	2073	9	NNC	ENSMUSG00000031816.16	novel	1060	10	NA	NA	-3	-4	intron_retention	FALSE	canonical	1	1	junction_1	26.7555484899861	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAAGCTGCTTGTATGTT	NA	False	NA	NA	False	NA	NA	NA	121835060	121824299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_121824987_121825201_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
59736	chr6	+	1139	6	NNC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	-36	574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	997.91991662658	27	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTTGCTGTACTGAA	582	False	NA	NA	False	NA	NA	NA	88061508	88080943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072662_88080811
59737	chr19	-	2037	13	NIC	ENSMUSG00000024926.11	novel	2154	14	NA	NA	0	-6	intron_retention	FALSE	canonical	3	118	junction_9	100.21144312569	439	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGCAGAGCTATCAGGAG	3629	False	NA	NA	False	NA	NA	NA	5660076	5653050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
59738	chr7	+	1024	7	FSM	ENSMUSG00000030588.13	ENSMUST00000108237.2	1086	7	-14	76	-14	-12	multi-exon	FALSE	canonical	3	48	junction_5	686.982471877316	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTCGGCGCAGCCT	6146	False	NA	NA	False	NA	NA	NA	28937862	28946942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
59739	chr13	+	2353	12	Antisense	novelGene_ENSMUSG00000098341.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCCCTTCTGGAGAAACC	NA	False	NA	NA	False	NA	NA	NA	55621543	55630608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_55622107_55622268_55622371_55622671_55623352_55623960_55624129_55625362_55625522_55625589_55625649_55629160_55629225_55629350_55629508_55629728_55629799_55629957_55630108_55630223_55630328_55630531
59740	chr11	-	2006	11	Fusion	ENSMUSG00000020743.16_ENSMUSG00000020744.14	novel	2614	8	NA	NA	-2	-35	multi-exon	FALSE	non_canonical	0	0	junction_4	137.562676624148	1	76	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGGTTTTCTAATAAATC	NA	False	NA	NA	False	NA	NA	NA	115518958	115498778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500469_115502728_115502861_115506286_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514869_115518886
59741	chr19	-	1579	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	56	0	56	0	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	144	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCATTTGCTTATTA	NA	False	NA	NA	False	NA	NA	NA	6178278	6169428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
59743	chr16	-	1285	1	Intergenic	novelGene_3663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACGAATCTCATCTTACC	NA	False	NA	NA	False	NA	NA	NA	48460272	48458987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_48459000_48460300
59744	chr13	+	1354	7	NNC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	415	-3369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	528.781513376639	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTCCTCATCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	92491648	92522192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232_92521423_92521631
59747	chr11	+	1515	10	NNC	ENSMUSG00000056938.17	novel	961	8	NA	NA	-18	0	intron_retention	FALSE	canonical	1	6	junction_9	51.2570380593464	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	NA	False	NA	NA	NA	102994059	103003026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002364_103002484_103002668
59748	chr4	-	1604	4	NNC	ENSMUSG00000041193.16	novel	1976	5	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.8482230730809	1	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGAATTCACATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	138546535	138526564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_138527808_138531876_138531963_138533495_138533546_138546310
59749	chr10	-	1947	7	NNC	ENSMUSG00000000711.4	novel	3180	6	NA	NA	-16	-275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.5908678555519	13	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTACCTGCTGCCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	128532149	128513318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128513360_128514333_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128532054
59750	chr13	+	3527	9	NNC	ENSMUSG00000110123.2	novel	915	10	NA	NA	7277	2635	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	24.4015880630749	30	27	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTGTTTCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	13505225	13527647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_13505348_13505450_13505502_13510200_13510228_13517810_13517904_13518036_13518284_13519905_13519976_13520480_13520568_13522598_13522733_13524951
59751	chrX	+	2167	11	FSM	ENSMUSG00000041658.13	ENSMUST00000039720.11	2258	11	-10	101	-10	-101	multi-exon	FALSE	canonical	3	216	junction_4	30.0765689532566	30	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTCAAAAAATTATATATA	3166	False	NA	NA	False	NA	NA	NA	151922966	151954838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
59752	chr12	+	822	3	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-29	-1702	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2217	17	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGATATTTAATTGTAGG	NA	False	NA	NA	False	NA	NA	NA	78908829	78932082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913501_78931586
59753	chr7	+	920	6	FSM	ENSMUSG00000078681.11	ENSMUST00000107495.5	1003	6	72	11	8	0	multi-exon	FALSE	canonical	3	37	junction_2	226.65709783724	859	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	NA	False	NA	NA	NA	65343236	65351650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_65343318_65343598_65343692_65344890_65345076_65347443_65347619_65348839_65348916_65351340
59754	chr9	+	782	3	NNC	ENSMUSG00000032215.16	novel	1543	6	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	488.5	165	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTACATATCTCTTATTT	8586	False	NA	NA	False	NA	NA	NA	73020735	73030615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_73020866_73022169_73022209_73030002
59755	chr6	-	1254	9	FSM	ENSMUSG00000051169.15	ENSMUST00000113092.9	1269	9	5	10	-4	0	multi-exon	FALSE	canonical	3	151	junction_2	15.858258889298	946	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGCAGATGTTTACC	NA	False	NA	NA	False	NA	NA	NA	113396296	113392289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
59756	chr15	+	1087	6	NNC	ENSMUSG00000058655.10	novel	1548	9	NA	NA	-4044	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	329.390103069294	4	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGGTTAATGTTGCAG	NA	False	NA	NA	False	NA	NA	NA	101990414	102005603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995079_102005170
59757	chr11	+	676	6	ISM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	1966	-10	-829	5	3prime_fragment	FALSE	canonical	3	5433	junction_5	527.977499520576	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGAGTCCTGGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	48693149	48696925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
59758	chr7	-	1414	1	Intergenic	novelGene_3024	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGGATTAAAGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	112860286	112858872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_112858900_112860300
59759	chr9	+	2631	21	FSM	ENSMUSG00000023259.18	ENSMUST00000188557.8	2552	21	-58	-21	3	0	multi-exon	FALSE	canonical	3	10	junction_1	9.81121806912883	50	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCTGCTGTGGCATGGTC	NA	False	NA	NA	False	NA	NA	NA	108731275	108742117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108731386_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
59760	chr14	-	2241	12	FSM	ENSMUSG00000034450.9	ENSMUST00000059970.9	2263	12	22	0	22	0	multi-exon	FALSE	canonical	2	4	junction_5	1.97086212624353	20	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGCCCTTGAGGAAT	NA	False	NA	NA	False	NA	NA	NA	66246634	66224234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_66225144_66225630_66225722_66227827_66227993_66228478_66228629_66234272_66234350_66235008_66235117_66237282_66237469_66240039_66240131_66241530_66241626_66243285_66243412_66245487_66245590_66246493
59761	chr7	+	2117	1	NIC	ENSMUSG00000030763.8	novel	1369	11	NA	NA	364	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTCAGACTCTGCTAC	NA	False	NA	NA	False	NA	NA	NA	123027446	123029563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_123027400_123029600
59762	chr3	+	2495	2	Antisense	novelGene_ENSMUSG00000027803.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	62	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATAAACAAAGTTTGAAGCA	NA	False	NA	NA	False	NA	NA	NA	57480388	57483226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_57482679_57483021
59763	chr4	-	3894	12	NIC	ENSMUSG00000040183.14	novel	4573	16	NA	NA	-6001	1	combination_of_known_splicesites	FALSE	canonical	2	9	junction_10	4.3026034786179	21	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGTATTCTACTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	32828802	32804033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_32806643_32808683_32808811_32810197_32810312_32815234_32815388_32816910_32817097_32817418_32817551_32818604_32818710_32821256_32821335_32822152_32822252_32823405_32823505_32827088_32827188_32828709
59764	chr16	+	2542	1	ISM	ENSMUSG00000091712.3	ENSMUST00000230616.2	5740	16	37615	6	37615	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	64	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAATATCTGTCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	5002587	5005129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_5002600_5005100
59765	chr11	-	2219	1	Intergenic	novelGene_2474	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCTAAGATTGGAAGCTA	5621	False	NA	NA	False	NA	NA	NA	98037982	98035763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_98035800_98038000
59766	chr12	+	1686	6	NIC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	1825	-14	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	18.3586491877807	10	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATCCTGAAGAAGAAATTG	7226	False	NA	NA	False	NA	NA	NA	105713358	105748692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105713575_105727726_105727856_105732812_105733011_105734788_105735010_105747108_105747268_105747929
59768	chr1	+	2377	8	NNC	ENSMUSG00000004768.15	novel	4322	8	NA	NA	-4	-12	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	40.1512446753471	6	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCCTATATTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	33758963	33779841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_33759102_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
59770	chrX	-	1566	4	Antisense	novelGene_ENSMUSG00000086877.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCAGGCCCATCTAGATC	9122	False	NA	NA	False	NA	NA	NA	20853233	20828404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20828835_20833967_20834046_20851662_20851703_20852215
59771	chr8	-	1614	11	NIC	ENSMUSG00000065954.12	novel	6471	11	NA	NA	1	-1459	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	20.3492014585339	8	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCAGATAAGACCCTCTG	NA	False	NA	NA	False	NA	NA	NA	25730916	25649203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25730809
59772	chr3	-	945	5	NNC	ENSMUSG00000028066.16	novel	1007	5	NA	NA	-1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	446.352649258409	60	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGAGGAGGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	88317634	88301446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88301878_88303211_88303347_88306441_88306543_88307017_88307124_88317462
59773	chr14	-	2127	2	NNC	ENSMUSG00000022114.6	novel	2087	2	NA	NA	-2119	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	167	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCTGAGCTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	106136372	106129384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_106131236_106136096
59774	chr15	+	3251	12	Antisense	novelGene_ENSMUSG00000022614.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	188	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTCTGGCCCACGCCGCA	NA	False	NA	NA	False	NA	NA	NA	89235355	89239710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89236078_89236170_89236285_89236357_89236470_89236563_89236728_89236805_89236986_89237057_89237155_89237235_89237343_89237412_89237548_89237659_89237807_89238036_89238217_89238288_89238500_89238628
59775	chrX	+	1370	6	NNC	ENSMUSG00000016409.5	novel	4230	9	NA	NA	-7	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	161.263014978637	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGACATGTTTCATAT	NA	False	NA	NA	False	NA	NA	NA	36390440	36414383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403371_36413935
59776	chr9	-	1319	9	NIC	ENSMUSG00000032376.13	novel	2405	14	NA	NA	-7540	-1749	intron_retention	FALSE	canonical	3	110	junction_8	14.2806687518477	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGTCCAGACAGTTGCC	NA	False	NA	NA	False	NA	NA	NA	66455173	66427438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153
59777	chr18	-	2927	1	NIC	ENSMUSG00000048799.9	novel	4554	21	NA	NA	251	2564	mono-exon	FALSE	NA	NA	NA	NA	NA	3	46	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGCTGCATTTATG	NA	False	NA	NA	False	NA	NA	NA	53877361	53874434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_53874400_53877400
59780	chr16	+	639	2	FSM	ENSMUSG00000022841.16	ENSMUST00000150537.2	593	2	224	-270	224	-155	multi-exon	FALSE	canonical	3	2807	junction_1	0	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGAGTTGCTGGCTAAAT	8578	False	NA	NA	False	NA	NA	NA	20361452	20362651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20361501_20362060
59781	chr12	+	1498	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2525	-2	794	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	3	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAATAAAAAGACCATTAAC	9257	False	NA	NA	False	NA	NA	NA	100165785	100173548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
59782	chr6	+	1055	5	Intergenic	novelGene_4251	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	35	junction_3	65.7395428946688	698	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAACTCTGGTGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	125409631	125435800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_125409775_125409999_125410201_125415223_125415345_125434610_125434718_125435317
59783	chr9	-	1565	18	NIC	ENSMUSG00000058444.9	novel	2310	22	NA	NA	220	-623	combination_of_known_splicesites	FALSE	canonical	3	8	junction_16	18.7852552058467	9	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAAGCAAGTTGTGTAGCA	NA	False	NA	NA	False	NA	NA	NA	63284939	63124175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63279018_63279068_63284404
59784	chr1	+	1151	9	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	903.201251106308	50	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724146	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59749707_59749812_59750429
59785	chr15	-	1843	8	ISM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	772	3975	759	-2658	internal_fragment	FALSE	canonical	3	163	junction_6	17.1118767682161	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTCTAGCATCCACAAC	701	False	NA	NA	False	NA	NA	NA	9139680	9116047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518
59786	chr9	-	1001	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	-11	3	-4	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	1021	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTTTCCTTATTGCATG	NA	False	NA	NA	False	NA	NA	NA	114610928	114585906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
59787	chr5	+	1296	9	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	-30	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1680.39987335604	4	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGTCTCTGTAGATTTC	579	False	NA	NA	False	NA	NA	NA	135807459	135819241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818602_135818930
59789	chr1	+	1724	13	NNC	ENSMUSG00000026280.18	novel	4173	13	NA	NA	-12	-16	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	140.033527731358	2	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTTGAAGTTGTTTAACA	NA	False	NA	NA	False	NA	NA	NA	93682744	93715885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93682777_93695774_93695877_93695976_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713683_93714229_93714448_93715407
59791	chr6	-	3123	23	NNC	ENSMUSG00000029822.16	novel	3307	22	NA	NA	25528	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_22	4.029847319873	20	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGTGTGGGTTACAA	NA	False	NA	NA	False	NA	NA	NA	50407613	50273784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_50274142_50276295_50276419_50277903_50278031_50279996_50280142_50285270_50285416_50286292_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304354_50304449_50305649_50305785_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50407538
59792	chr1	+	3358	1	FSM	ENSMUSG00000092627.3	ENSMUST00000189763.2	3030	1	1444	-1772	1444	1772	mono-exon	FALSE	NA	NA	NA	NA	NA	25	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAGATCAAGTGGTGTAT	NA	False	NA	NA	False	NA	NA	NA	89859426	89862784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_89859400_89862800
59793	chr8	+	1324	6	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	638.523484297954	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8846	False	NA	NA	False	NA	NA	NA	120637571	120684299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120681626_120681673_120682936_120683003_120683321
59794	chrX	+	979	8	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-44	28	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	1717.76024080719	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCATTGTCTAGTTTC	NA	False	NA	NA	False	NA	NA	NA	100473296	100491337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485327_100488900_100488941_100489733_100489835_100491199
59795	chr12	-	3368	1	Antisense	novelGene_ENSMUSG00000097451.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCTGAAACAGCACGGGAC	NA	False	NA	NA	False	NA	NA	NA	109583527	109580159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_109580200_109583500
59796	chr7	-	1984	5	NIC	ENSMUSG00000030839.13	novel	2551	12	NA	NA	14270	-68240	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	46.6871234924577	6	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTGTAATTTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	46271101	46160884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46162485_46165091_46165129_46240030_46240198_46268119_46268183_46270984
59797	chr7	+	1629	10	NNC	ENSMUSG00000073838.11	novel	1754	9	NA	NA	19	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	266.0831114938	1	109	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACTCAGCTTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126086568	126089894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088606_126088723_126088888_126088977_126089084_126089492
59798	chr11	-	1266	9	NNC	ENSMUSG00000018697.15	novel	1822	13	NA	NA	52	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	228.970522120207	4	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACAATAAACCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84404296	84313712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_84313846_84336417_84336525_84362022_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
59799	chr6	-	2293	3	NIC	ENSMUSG00000046806.14	novel	1501	4	NA	NA	-5	-24	intron_retention	FALSE	canonical	3	18	junction_2	2.5	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTAAGGTGAGGGGACAC	7592	False	NA	NA	False	NA	NA	NA	34855000	34850653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_34852548_34853473_34853707_34854834
59800	SIRV7	-	865	6	NNC	SIRV7A	novel	889	6	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	1849.21276223154	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_56098_70883_70988_78841_78964_114686_114791_114839_114961_147608
59801	chr8	-	1908	10	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38789	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	86.4614379183783	2	80	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATCTTCCCTCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	43633312	43583074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43594003_43594338_43596951_43597104_43597362_43597564_43618053_43618097_43633233
59802	chr18	-	1954	2	Intergenic	novelGene_4553	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGTCTTAGCAAACAGC	NA	False	NA	NA	False	NA	NA	NA	62882837	62878001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_62879752_62882633
59804	chr17	+	1573	8	NNC	ENSMUSG00000007603.10	novel	2749	10	NA	NA	1486	-55	intron_retention	FALSE	canonical	1	1	junction_1	106.311440818849	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGGCCAATGCCTACAAG	NA	False	NA	NA	False	NA	NA	NA	57074219	57076785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57074289_57074636_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
59805	chr5	-	1646	4	Antisense	novelGene_ENSMUSG00000023707.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGCAGGAGCTACGAGC	9869	False	NA	NA	False	NA	NA	NA	124253534	124250863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_124251392_124251488_124251596_124252454_124252706_124252774
59806	chr9	-	1463	1	FSM	ENSMUSG00000119666.1	ENSMUST00000240226.1	72	1	-1288	-103	-1288	103	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAAACTAGATGTGACCA	NA	False	NA	NA	False	NA	NA	NA	88404941	88403478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403500_88404900
59807	chr9	-	1713	5	Fusion	ENSMUSG00000098161.2_ENSMUSG00000103968.2	novel	388	4	NA	NA	-52	5348	multi-exon	FALSE	non_canonical	0	0	junction_1	22.796655456448	76	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCAGGCATGATGGTT	NA	False	NA	NA	False	NA	NA	NA	118235219	118226184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_118227473_118232126_118232223_118233371_118233493_118233797_118233891_118235104
59808	chr12	-	1094	6	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3168.76017394816	1	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCCTATTTCTGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637885_111638014_111638199_111638408_111638663
59809	chr6	+	1555	8	FSM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	196	9	107	-9	multi-exon	FALSE	canonical	3	681	junction_7	54.6573743554204	192	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGAAGTTTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	142702607	142721431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840_142717995_142720875
59810	chr5	-	948	6	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGGAAAGATGGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	129100208	129097309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129097355_129097721_129097817_129097946_129098054_129099064_129099262_129099468_129099594_129099829
59812	chr19	+	2372	11	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	37771	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	33.663630226106	1	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTTGCTTGCCCCTGCT	NA	False	NA	NA	False	NA	NA	NA	25252109	25411857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_25252199_25295668_25295797_25355774_25355895_25399507_25399706_25400282_25400392_25403260_25403349_25405340_25405561_25407584_25407732_25408242_25408444_25410228_25410328_25410884
59813	chr15	-	2110	8	ISM	ENSMUSG00000013846.11	ENSMUST00000229213.2	2337	10	23611	12	23543	-12	3prime_fragment	FALSE	canonical	1	1	junction_4	1.67819144635296	8	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTTCAAAAGAGTGAACAT	NA	False	NA	NA	False	NA	NA	NA	67025018	66978145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_66978680_66980057_66980178_66981454_66981501_66983080_66983261_66984279_66984477_66985355_66986207_67000401_67000457_67024891
59814	chr8	+	1835	10	NNC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-1496	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	86.9296579545713	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGCTCAGTGTTGTTGC	7185	False	NA	NA	False	NA	NA	NA	122716700	122752917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_122716811_122718237_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750863_122752285
59815	chr8	+	1625	11	FSM	ENSMUSG00000040220.11	ENSMUST00000093043.7	1681	11	53	3	31	-3	multi-exon	FALSE	canonical	3	26	junction_4	6.18789140176199	117	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATATTCTCTGTCGTTGTG	NA	False	NA	NA	False	NA	NA	NA	124245625	124263386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124245692_124247342_124247430_124249676_124249875_124250816_124251024_124252357_124252413_124253203_124253410_124254650_124254819_124255116_124255204_124257565_124257776_124259991_124260058_124263111
59816	chr9	-	1344	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	1	1	1	-1	multi-exon	FALSE	canonical	3	96	junction_1	7.5	508	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTGGAGTGATGTGTG	NA	False	NA	NA	False	NA	NA	NA	89587120	89581259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_89582033_89584824_89585074_89586798
59817	chr19	+	1937	11	FSM	ENSMUSG00000024776.19	ENSMUST00000239240.2	1988	11	29	22	29	-20	multi-exon	FALSE	canonical	3	29	junction_1	14.1918990977247	83	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGTGCTGCAAATAACAA	NA	False	NA	NA	False	NA	NA	NA	34169657	34217711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_34169996_34197586_34197667_34203941_34204160_34207492_34207569_34208830_34208927_34211360_34211719_34212609_34212735_34213675_34213814_34216175_34216289_34216902_34217003_34217416
59819	chrX	-	1775	12	NIC	ENSMUSG00000031109.17	novel	3632	13	NA	NA	0	-439	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	16.2134522251694	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCTTAGGATGTGAGTTT	3721	False	NA	NA	False	NA	NA	NA	48169629	48100332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493
59820	chr10	-	1735	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	199	6	199	-6	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	1	94	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTAATGATGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	5755401	5749165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
59821	chr13	+	1005	10	NIC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	409	junction_5	30.3205101100449	1318	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	104365453	104386125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
59822	chr4	-	2562	3	FSM	ENSMUSG00000049225.15	ENSMUST00000108299.2	2588	3	11	15	4	-11	multi-exon	FALSE	canonical	3	47	junction_2	3	30	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACGCAGAATGAAAAGAGAC	-2	True	NA	NA	False	NA	NA	NA	11966416	11959821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_11962234_11965613_11965649_11966301
59823	chr5	+	1482	1	ISM	ENSMUSG00000038384.17	ENSMUST00000163030.9	8857	17	24951	4	3763	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	91	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGCTACGCCGTCTCTC	2704	False	NA	NA	False	NA	NA	NA	123305206	123306688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_123305200_123306700
59824	chr7	+	363	1	Intergenic	novelGene_3014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCCATTCACCATAGCT	NA	False	NA	NA	False	NA	NA	NA	106811594	106811957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_106811600_106812000
59828	chr4	+	1362	9	NNC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	3	-44	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	112.497708309992	1636	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACACAGTGTCTGGGCCT	-28	True	NA	NA	False	NA	NA	NA	44981397	44990690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990247
59830	chr17	-	1682	11	NIC	ENSMUSG00000024426.18	novel	1340	12	NA	NA	-1	0	intron_retention	FALSE	canonical	3	28	junction_4	35.5786452805612	125	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	NA	False	NA	NA	NA	36220939	36208500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
59831	chr2	-	1960	1	Antisense	novelGene_ENSMUSG00000033943.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	41	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGCACTACCATGCCCAG	NA	False	NA	NA	False	NA	NA	NA	119797880	119795920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119795900_119797900
59832	chr4	+	1329	4	NNC	ENSMUSG00000073684.14	novel	692	4	NA	NA	95	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	99.7697348898953	183	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAGTATTTTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	155334554	155341135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155334695_155334743_155335108_155335212_155335494_155340591
59833	chr8	-	1150	14	NNC	ENSMUSG00000031536.7	novel	1201	14	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	51.8827763829876	3	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATATTGTCTTAACAAAT	NA	False	NA	NA	False	NA	NA	NA	23143444	23118147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127116_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
59834	chr8	+	2575	12	FSM	ENSMUSG00000037134.18	ENSMUST00000056237.15	2781	12	204	2	147	-1	multi-exon	FALSE	canonical	3	124	junction_5	20.627751506924	58	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAGTGTATGTAACATT	NA	False	NA	NA	False	NA	NA	NA	78276229	78307965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289042_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
59835	chr16	+	1436	8	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	236.676219027306	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	48104164	48114600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48110166_48110191_48111376_48111678_48113273_48113470_48114061
59836	chr9	+	4386	2	ISM	ENSMUSG00000032547.13	ENSMUST00000175883.8	2505	15	67276	288	3638	-288	3prime_fragment	FALSE	canonical	3	399	junction_1	0	2	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTAGACACAGATATTT	NA	False	NA	NA	False	NA	NA	NA	102779391	102784453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_102783373_102784048
59837	chr8	-	3344	11	Antisense	novelGene_ENSMUSG00000015568.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCTGACACTGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	69359541	69333216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69333492_69340093_69340255_69345245_69345425_69347276_69347388_69348308_69348550_69349252_69349492_69352066_69352188_69353795_69353981_69354933_69355035_69357154_69357816_69358471
59838	chr11	+	533	3	ISM	ENSMUSG00000071866.13	ENSMUST00000213200.2	1450	5	1966	4	1966	-4	3prime_fragment	FALSE	canonical	3	36680	junction_2	619	84	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAATAAGAACTGTTTGT	2037	False	NA	NA	False	NA	NA	NA	6368277	6369800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_6368315_6369112_6369286_6369477
59839	chr14	-	1373	6	NNC	ENSMUSG00000021792.16	novel	1537	6	NA	NA	-27	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	135.840200235424	2	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCACCTCTGTGCACAA	NA	False	NA	NA	False	NA	NA	NA	40735772	40715695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_40716390_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
59840	chr7	-	1303	6	NNC	ENSMUSG00000033917.16	novel	1582	6	NA	NA	-13	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	196.058154637852	12	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTACTGATCTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	118304616	118287767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297941_118304493
59841	chr13	+	2200	10	ISM	ENSMUSG00000036006.21	ENSMUST00000110384.9	5608	23	62629	1675	-8786	-1675	3prime_fragment	FALSE	canonical	0	0	junction_1	1.25707872210942	3	47	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGATCAGCTATAAGACAG	5392	False	NA	NA	False	NA	NA	NA	24885259	24916124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_24885714_24890073_24890259_24894105_24894275_24897604_24897741_24899272_24899435_24901529_24901689_24905613_24905817_24907691_24907776_24908928_24909020_24915567
59842	chrX	-	3361	2	FSM	ENSMUSG00000031202.6	ENSMUST00000033545.6	3401	2	25	15	25	-15	multi-exon	FALSE	canonical	3	5	junction_1	0	37	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTGAGAGATTCCATAT	467	False	NA	NA	False	NA	NA	NA	74621812	74615666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_74618614_74621398
59843	chr13	+	1271	7	Antisense	novelGene_ENSMUSG00000116016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGGGCGTGTAGGCCT	NA	False	NA	NA	False	NA	NA	NA	111562738	111584471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111563182_111570078_111570188_111572934_111573118_111574489_111574659_111575637_111575779_111577166_111577351_111584429
59844	chr3	-	1173	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20560	117	intron_retention	FALSE	canonical	1	2	junction_1	0.5	7	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTTGCAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	103126851	103105424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103106316_103126433_103126657_103126792
59845	chr17	+	1191	5	NIC	ENSMUSG00000002767.14	novel	1031	7	NA	NA	0	-3	intron_retention	FALSE	canonical	3	1085	junction_2	50.2866781563467	79	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTCTTACTACCTTTT	NA	False	NA	NA	False	NA	NA	NA	46957154	46961054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46957325_46958315_46958485_46959162_46959696_46959960_46960035_46960809
59846	chr18	-	1821	8	Antisense	novelGene_ENSMUSG00000089296.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTCTTCCGTCTCCAG	NA	False	NA	NA	False	NA	NA	NA	38449914	38429742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_38429842_38433477_38433643_38434707_38434856_38440912_38441452_38442539_38442765_38446262_38446435_38447722_38447858_38449576
59847	chr3	+	1307	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	119.132213842436	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGCTAACTCTTCATAT	7740	False	NA	NA	False	NA	NA	NA	115681813	115722720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718950_115720345_115720450_115722157_115722405_115722479
59848	chr16	-	4156	15	Intergenic	novelGene_3617	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCAATGCGCAGGCGCC	NA	False	NA	NA	False	NA	NA	NA	21747768	21613101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_21613197_21614599_21614724_21710631_21711189_21717236_21717423_21722495_21722688_21723867_21724026_21724509_21724669_21725193_21725300_21727410_21727523_21729753_21729871_21732899_21733039_21740313_21741085_21744165_21744234_21744920_21745219_21746694
59849	chr9	+	1607	4	NIC	ENSMUSG00000003299.11	novel	1288	9	NA	NA	-131	-8	intron_retention	FALSE	canonical	3	966	junction_2	15.7973274814304	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACAAGACTTGAAAATGAG	NA	False	NA	NA	False	NA	NA	NA	20914548	20920119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_20914701_20917429_20917482_20918122_20919196_20919789
59850	chr2	-	2719	9	FSM	ENSMUSG00000038718.16	ENSMUST00000040638.15	2587	9	129	-261	5	-5	multi-exon	FALSE	canonical	3	23	junction_3	7.22733526273688	41	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTACATGCCATGTGTGTC	961	False	NA	NA	False	NA	NA	NA	34261927	34061473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34062986_34065876_34065967_34066760_34066874_34068188_34068355_34094791_34094928_34103263_34103455_34114416_34114659_34260835_34260910_34261732
59851	chr15	-	1968	1	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	53	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	17	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	102087401	102085433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102085400_102087400
59852	chr2	+	1206	2	FSM	ENSMUSG00000074578.15	ENSMUST00000136378.2	731	2	1	-476	1	-4	multi-exon	FALSE	canonical	3	1008	junction_1	0	43	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTGCTGTGTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	166905141	166907778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_166905648_166907078
59853	chr19	-	1530	1	ISM	ENSMUSG00000033610.17	ENSMUST00000036584.13	7414	7	68519	2467	66913	1487	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTGTCATCTGTGTTTGT	NA	False	NA	-55	True	NA	NA	NA	34788336	34786806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_34786800_34788300
59854	chrX	-	802	1	FSM	ENSMUSG00000080241.4	ENSMUST00000116499.4	451	1	-101	-250	-101	250	mono-exon	FALSE	NA	NA	NA	NA	NA	43	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGCATTTTTGTTAGC	NA	False	NA	NA	False	NA	NA	NA	36807851	36807049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36807000_36807900
59855	chr5	-	620	6	Antisense	novelGene_ENSMUSG00000077564.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGACGAGAGAGCCACGC	NA	False	NA	NA	False	NA	NA	NA	146772796	146770011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_146770108_146770462_146770549_146770991_146771088_146771846_146771915_146772373_146772522_146772670
59856	chr15	-	2350	3	ISM	ENSMUSG00000041849.8	ENSMUST00000118365.3	5995	4	161	3590	106	-3590	3prime_fragment	FALSE	canonical	1	2	junction_1	2.5	9	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGGAAAGATTCACAAGAT	NA	False	NA	NA	False	NA	NA	NA	5137860	5129052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_5130578_5134384_5134919_5137569
59859	chr18	-	1106	4	ISM	ENSMUSG00000024420.10	ENSMUST00000234480.2	3457	6	27753	1204	26542	-4	internal_fragment	FALSE	canonical	0	0	junction_3	3.2659863237109	7	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGCTGTGAGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	13950347	13821276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_13822082_13848197_13848314_13850672_13850805_13950294
59860	chr18	+	1470	7	NNC	ENSMUSG00000024317.16	novel	3002	7	NA	NA	-4	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	183.480622652336	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTTAAACGGTAATGACT	NA	False	NA	NA	False	NA	NA	NA	21135043	21160612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142_21159808_21160441
59862	chr1	+	1928	9	FSM	ENSMUSG00000026203.17	ENSMUST00000082158.13	1253	9	200	-875	51	-9	multi-exon	FALSE	canonical	3	30	junction_8	6.09815545882523	4	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTTGAGAACTCGGTG	2437	False	NA	NA	False	NA	NA	NA	75213308	75222323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
59864	chr11	-	1727	10	Antisense	novelGene_ENSMUSG00000078652.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTCGCCGCTCACGCCG	NA	False	NA	NA	False	NA	NA	NA	101213474	101207064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_101207327_101208150_101208216_101208446_101208556_101210281_101210329_101210735_101210853_101211043_101211103_101211217_101211287_101211385_101211439_101211550_101211640_101212617
59867	chr6	-	449	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	8	60	8	-53	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGATGGCTTGTGTGCA	NA	False	NA	NA	False	NA	NA	NA	115785700	115782525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
59868	chr14	+	2715	1	Genic_Genomic	ENSMUSG00000097533.3	novel	NA	NA	NA	NA	-200	-13190	mono-exon	FALSE	NA	NA	NA	NA	NA	3	34	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAAATGTTTTTCCTCTT	6817	False	NA	NA	False	NA	NA	NA	52434758	52437473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_52434800_52437500
59870	chr11	-	1345	1	Antisense	novelGene_ENSMUSG00000014245.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAAGCGCGTTCACAGAC	6562	False	NA	NA	False	NA	NA	NA	62404350	62403005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62403000_62404400
59871	chr7	+	1583	8	ISM	ENSMUSG00000051048.18	ENSMUST00000208565.2	1215	9	3919	-460	3919	-1	3prime_fragment	FALSE	canonical	1	3	junction_5	4.23300925429402	42	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCTTCTAACAGCGACT	NA	False	NA	NA	False	NA	NA	NA	99954706	99968904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_99954871_99955073_99955251_99959993_99960059_99962412_99962573_99963814_99963878_99966248_99966318_99967188_99967286_99968116
59872	chr7	+	1289	4	NIC	ENSMUSG00000030432.13	novel	1106	5	NA	NA	-25	181	intron_retention	FALSE	canonical	3	3938	junction_1	1294.5476258352	2	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTGAGGGACTCAGTGGC	2784	False	NA	NA	False	NA	NA	NA	4795963	4798246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_4795998_4796319_4796626_4797062_4797182_4797416
59874	chr19	-	2730	20	FSM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	24	93	5	0	multi-exon	FALSE	canonical	3	80	junction_19	17.2102848848348	97	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAAGCCTGTCCCTGGC	NA	False	NA	NA	False	NA	NA	NA	42768393	42743636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
59875	chr11	+	2352	1	Genic_Genomic	ENSMUSG00000001983.8	novel	NA	NA	NA	NA	-12	-5212	mono-exon	FALSE	NA	NA	NA	NA	NA	17	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGTTCTCCTTATTCCAA	862	False	NA	NA	False	NA	NA	NA	105956874	105959226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_105956900_105959200
59876	chr10	+	2232	1	Intergenic	novelGene_3427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTAGCTCACAAGGGATT	NA	False	NA	NA	False	NA	NA	NA	41168961	41171193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_41169000_41171200
59877	chr6	-	2000	6	NIC	ENSMUSG00000068329.13	novel	1605	7	NA	NA	-35	-2	intron_retention	FALSE	canonical	3	429	junction_5	71.0943035692734	3	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACATGTTACAGTCAAAA	1991	False	NA	NA	False	NA	NA	NA	83031458	83028266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83028616_83028722_83028819_83029453_83030052_83030309_83030505_83030593_83030799_83030901
59884	chr17	+	2169	15	NNC	ENSMUSG00000024392.18	novel	3787	24	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	245.59828034032	88	28	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8538	False	NA	NA	False	NA	NA	NA	35354203	35366281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361973_35365838_35365880_35366116
59885	chr19	-	1769	1	Antisense	novelGene_ENSMUSG00000003559.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCGGGACCTGAGGACAAG	2421	False	NA	NA	False	NA	NA	NA	46698942	46697173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46697200_46698900
59887	chr13	-	2488	15	NIC	ENSMUSG00000021461.18	novel	3111	15	NA	NA	-11	-47	combination_of_known_splicesites	FALSE	canonical	2	5	junction_14	30.5478046240141	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACATCTGCTTCCCTAT	NA	False	NA	NA	False	NA	NA	NA	63579519	63459995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550892_63579263
59888	chr8	-	697	8	FSM	ENSMUSG00000031708.18	ENSMUST00000212005.2	878	8	183	-2	-130	0	multi-exon	FALSE	canonical	3	3555	junction_3	211.176587292266	3	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84299699	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656
59889	chr3	-	874	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	88	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3910.13807428843	3	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTTTGCTTCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	86049921	86045253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048726_86049004_86049109_86049814
59890	chr11	-	1631	4	NNC	ENSMUSG00000020553.9	novel	2723	6	NA	NA	26	-764	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.2155056000751	5	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTCTGTGTGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	89893694	89874254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_89875554_89879553_89879601_89881896_89882015_89893527
59891	chr11	-	504	2	ISM	ENSMUSG00000019761.11	ENSMUST00000103131.5	2094	8	3302	11	35	2	3prime_fragment	FALSE	canonical	3	82	junction_1	0	262	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTATAAAAATCTGTCAGA	8374	False	NA	NA	False	NA	NA	NA	99276888	99276090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_99276463_99276756
59893	chr2	+	2852	12	Antisense	novelGene_ENSMUSG00000048647.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	23	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTCTGGGAGTTATC	NA	False	NA	NA	False	NA	NA	NA	119349568	119377376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_119351207_119354003_119354195_119355051_119355202_119359169_119359244_119359324_119359430_119360567_119360657_119363922_119363982_119369228_119369357_119369603_119369659_119370504_119370576_119371840_119372025_119377268
59894	chr15	-	2022	5	NIC	ENSMUSG00000022617.16	novel	2063	9	NA	NA	120	-3	intron_retention	FALSE	canonical	3	387	junction_3	8.52569645248997	17	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAACAAATACAGACTTA	1769	False	NA	NA	False	NA	NA	NA	89313513	89310572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89312219_89312336_89313031_89313251
59895	chr11	+	3745	6	Antisense	novelGene_ENSMUSG00000040373.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGCCGCCGCTGGAACAC	NA	False	NA	NA	False	NA	NA	NA	107765429	107805855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_107768436_107768720_107768870_107772425_107772564_107773714_107773804_107775174_107775410_107805727
59896	chr7	-	1829	7	NNC	ENSMUSG00000048330.15	novel	5281	6	NA	NA	0	-134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.8513917599978	53	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGTGTTGATACATGTC	NA	False	NA	NA	False	NA	NA	NA	108682529	108633652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_108633787_108637095_108638091_108647157_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
59898	chr14	-	963	5	Antisense	novelGene_ENSMUSG00000033589.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGGTGTAAGGTGAGAG	NA	False	NA	NA	False	NA	NA	NA	70786373	70784620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_70784674_70785104_70785213_70785372_70785515_70785623_70785778_70785867
59899	chr11	-	1455	7	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	558.345696380537	22	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	17161506	17153197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159162_17159361_17159395_17160987_17161138_17161312
59901	chr4	-	1673	3	ISM	ENSMUSG00000028651.13	ENSMUST00000136466.8	861	7	5329	-202	5329	-3	3prime_fragment	FALSE	canonical	3	964	junction_1	93	1	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTGCCTCCTGCAAG	NA	False	NA	NA	False	NA	NA	NA	123025362	123020910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_123021240_123021430_123021574_123024161
59902	chr11	-	1335	2	Genic_Genomic	ENSMUSG00000023764.19	novel	3969	33	NA	NA	1	-6466	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGCTCTCTTGGAGCCA	8036	False	NA	NA	False	NA	NA	NA	3143406	3142033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_3142086_3142123
59903	chr9	+	1441	3	ISM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	6847	7	6847	-7	3prime_fragment	FALSE	canonical	3	81	junction_1	1	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAGGTAGTTATATCA	3754	False	NA	NA	False	NA	NA	NA	108918407	108921550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108918716_108919908_108920074_108920582
59905	chr4	-	713	2	FSM	ENSMUSG00000060862.11	ENSMUST00000145505.2	4446	2	41	3692	41	-3692	multi-exon	FALSE	canonical	3	22	junction_1	0	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGATAAATGCAGACCCTC	9719	False	NA	NA	False	NA	NA	NA	136776071	136745480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_136746079_136775956
59906	chr4	-	2213	13	NIC	ENSMUSG00000060862.11	novel	7192	19	NA	NA	-9607	-54	combination_of_known_junctions	TRUE	canonical	3	15	junction_5	4.6785562825394	4	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGAGCTCTTCACCTCCCA	9592	False	NA	NA	False	NA	NA	NA	136728580	136712229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_136712352_136713793_136713881_136714519_136714683_136715858_136716074_136718808_136718974_136721655_136721863_136722561_136723024_136723335_136723505_136725131_136725266_136725807_136726010_136726786_136726924_136728204_136728286_136728511
59907	chr4	+	1275	1	Intergenic	novelGene_1905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATTCCTGTTGTACAGG	NA	False	NA	NA	False	NA	NA	NA	98678361	98679636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_98678400_98679600
59908	chr6	-	2215	3	Intergenic	novelGene_4215	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_2	3.5	44	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAAAAGTGGTTCAGT	NA	False	NA	NA	False	NA	NA	NA	100475549	100454604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_100456349_100456872_100457298_100475503
59909	chr8	+	1735	9	FSM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	54	0	-28	0	multi-exon	FALSE	canonical	3	145	junction_5	12.7322179921646	679	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTGTTTTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	95565002	95581523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232_95580287_95580741
59911	chr3	-	2866	23	FSM	ENSMUSG00000028041.18	ENSMUST00000029676.12	2975	23	102	7	65	1	multi-exon	FALSE	canonical	3	47	junction_3	32.1478056009843	148	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTCTGCTCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	89257201	89246953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
59913	chr15	+	1398	7	NNC	ENSMUSG00000001285.13	novel	1480	7	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	189.232367445131	15	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAACTGACCCAGTCCCTG	5945	False	NA	NA	False	NA	NA	NA	102240161	102246281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102240389_102240524_102240638_102242407_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
59915	chr10	+	1992	12	FSM	ENSMUSG00000069565.13	ENSMUST00000105362.8	2081	12	84	5	-6	-5	multi-exon	FALSE	canonical	3	848	junction_9	77.3423216017195	198	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACCTGAGTGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	80100901	80124237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
59916	chr3	-	1203	3	ISM	ENSMUSG00000027933.12	ENSMUST00000199992.5	1891	16	10363	-692	7924	4	3prime_fragment	FALSE	canonical	3	236	junction_1	7.5	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACATCTCTGTTCGTCC	NA	False	NA	NA	False	NA	NA	NA	90300158	90298690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_90299413_90299518_90299676_90299834
59917	chr6	+	1194	10	FSM	ENSMUSG00000056737.15	ENSMUST00000071044.13	1247	10	46	7	46	-5	multi-exon	TRUE	canonical	3	14	junction_1	22.7389913671443	322	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTCTCTTCCTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	72521419	72539959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72521450_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
59918	chr15	+	1737	7	FSM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	-16	4	-5	-4	multi-exon	FALSE	canonical	3	70	junction_1	10.0567832276971	153	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTCTGCTTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	76130958	76134100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76131101_76132050_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
59919	chr9	-	904	1	NIC	ENSMUSG00000032431.7	novel	1674	7	NA	NA	2149	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTAAAAGATGATAAATATA	NA	False	NA	NA	False	NA	NA	NA	114205140	114204236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_114204200_114205100
59921	chr19	+	1192	6	NIC	ENSMUSG00000108414.2	novel	744	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	781	junction_1	129.495019209234	13	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTATTGTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	8701503	8703804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8702086_8702377_8702621_8702848_8703191_8703430_8703467_8703602
59922	chr1	-	3613	12	Antisense	novelGene_ENSMUSG00000044340.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	21	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCATTCTTCTTAAGGCC	NA	False	NA	NA	False	NA	NA	NA	106321913	106267378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_106267396_106271100_106271309_106272588_106272649_106274812_106274909_106278259_106278411_106291964_106292170_106296741_106296906_106303891_106304022_106308047_106308149_106314053_106314250_106317401_106317628_106319854
59923	chr2	+	2871	3	NIC	ENSMUSG00000062175.14	novel	484	4	NA	NA	-143	-9	intron_retention	FALSE	canonical	3	38	junction_1	89.5	79	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCAAACTGAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	156682798	156697481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_156683011_156686075_156686302_156695048
59924	chr8	-	3096	19	FSM	ENSMUSG00000038291.17	ENSMUST00000041582.15	3206	19	75	35	75	-29	multi-exon	TRUE	canonical	0	0	junction_18	14.0391867795859	44	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGCATTTGAAGCAATA	NA	False	NA	NA	False	NA	NA	NA	46604667	46486337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46486860_46487438_46487540_46488574_46488757_46491491_46491559_46494353_46494472_46497004_46497170_46498222_46498337_46500327_46500469_46502402_46502535_46507355_46507518_46508884_46509161_46511503_46511636_46521092_46521275_46533258_46533330_46556551_46556739_46558155_46558329_46569218_46569436_46577098_46577184_46604598
59926	chr17	+	1784	1	Intergenic	novelGene_279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCAGTGGGTAAGAGCA	NA	False	NA	NA	False	NA	NA	NA	66403248	66405032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_66403200_66405000
59928	chr5	+	2175	6	NNC	ENSMUSG00000028999.16	novel	3363	14	NA	NA	0	-3154	intron_retention	FALSE	non_canonical	1	3	junction_5	30.6828942572242	10	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGACTTGCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	23992718	24012014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24011668_24011834
59929	chr11	-	518	6	NNC	ENSMUSG00000020460.16	novel	791	6	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6123.4369303521	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	NA	False	NA	NA	NA	29497881	29495845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_29496030_29496290_29496420_29496744_29496789_29497205_29497261_29497680_29497746_29497840
59930	chr3	-	1043	1	Antisense	novelGene_ENSMUSG00000028060.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAATAATCATAGACTAAAA	1171	False	NA	NA	False	NA	NA	NA	88606163	88605120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88605100_88606200
59931	chr11	-	1809	3	Antisense	novelGene_ENSMUSG00000007850.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCTTGCTCCTGCTGTAG	1326	False	NA	NA	False	NA	NA	NA	50277355	50274556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_50275563_50275966_50276016_50276601
59932	chr10	-	3591	3	NNC	ENSMUSG00000097164.3	novel	6566	3	NA	NA	230	-2703	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	9	34	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATCCTCACTCCATGTG	NA	False	NA	NA	False	NA	NA	NA	94524208	94509589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_94512992_94514192_94514310_94524136
59933	chrX	+	1178	7	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	10953	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	879.954244391276	4	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCACTTTTTGAATTC	NA	False	NA	NA	False	NA	NA	NA	52087966	52110533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
59934	chr15	+	3509	3	Antisense	novelGene_ENSMUSG00000022197.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCCTGGCTTTGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	12373859	12386004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_12376469_12382687_12382826_12385242
59935	chr2	-	1498	1	ISM	ENSMUSG00000039725.7	ENSMUST00000039007.7	1880	2	1699	18	1491	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	47	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTTTTGAAAAAGAACAGT	NA	False	NA	NA	False	NA	NA	NA	165333545	165332047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165332000_165333500
59936	chr19	+	1693	6	ISM	ENSMUSG00000024998.18	ENSMUST00000182267.2	7234	33	96233	65757	37074	-34085	internal_fragment	FALSE	canonical	3	15	junction_2	2.22710574513201	4	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATCGGAGACGGGGGT	NA	False	NA	NA	False	NA	NA	NA	38608885	38705482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_38609176_38640238_38640556_38686893_38687040_38690263_38690523_38693683_38693890_38705007
59938	chr1	+	1787	9	ISM	ENSMUSG00000073609.10	ENSMUST00000112881.8	3459	10	-34	4004	0	-4004	5prime_fragment	FALSE	canonical	2	4	junction_1	14.4633156641207	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAGCATCGGAGTCATT	NA	False	NA	NA	False	NA	NA	NA	93752961	93776066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_93753303_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824
59939	chr11	-	2354	1	ISM	ENSMUSG00000050567.17	ENSMUST00000135868.8	4924	4	33817	0	33817	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAAGCATGTTTGACTTC	NA	False	NA	NA	False	NA	NA	NA	50148814	50146460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_50146500_50148800
59940	chr1	+	747	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	1	11	0	-9	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	2	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATTATAACATGAACTGT	NA	False	NA	NA	False	NA	NA	NA	160862736	160866093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
59941	chr2	-	2482	16	NIC	ENSMUSG00000027546.16	novel	3729	28	NA	NA	45	-5	combination_of_known_junctions	FALSE	canonical	3	19	junction_15	72.489508819476	7	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAAGGTTGCAGGCTTTTC	3046	False	NA	NA	False	NA	NA	NA	168512221	168476362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168511919
59943	chr5	+	2433	8	NNC	ENSMUSG00000037795.15	novel	622	5	NA	NA	1379	2422	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	31.8138719583076	20	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGGAAGAAAGAACGGCA	6705	False	NA	NA	False	NA	NA	NA	65941669	65963972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_65941720_65943352_65943705_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532
59944	chr14	-	1336	2	ISM	ENSMUSG00000021917.17	ENSMUST00000226782.2	949	4	-10	3	-10	-1	intron_retention	FALSE	canonical	3	1794	junction_1	0	9	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTACATTTGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	30723576	30721785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_30722180_30722634
59945	chr9	+	2864	1	NIC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-4	-5910	mono-exon	FALSE	NA	NA	NA	NA	NA	19	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAGCAAGTCGACACG	1890	False	NA	NA	False	NA	NA	NA	59563876	59566740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59563900_59566700
59947	chr17	-	1325	9	NNC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-75	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	258.330910606919	1	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAAGTTCTTTTCAGGCT	NA	False	NA	NA	False	NA	NA	NA	46559055	46554862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556030_46556541_46556675_46557032_46557141_46558654_46558727_46558820
59948	chr13	+	2378	12	NIC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	69	-6	combination_of_known_splicesites	FALSE	canonical	3	11	junction_10	35.5078852841925	1	118	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGAACTATTTCATTT	NA	False	NA	NA	False	NA	NA	NA	119599388	119622647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119620988_119621030_119622262
59949	chr11	+	849	9	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	861.461539695766	46	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4563	False	NA	NA	False	NA	NA	NA	106147006	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152091_106152950_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
59950	chr3	-	670	4	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAATAGTGAGCATAATAA	NA	False	NA	NA	False	NA	NA	NA	151938409	151931776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151931850_151933809_151933882_151937512_151937658_151938029
59951	chr7	-	3012	21	ISM	ENSMUSG00000052353.14	ENSMUST00000150495.8	4287	24	83082	4886	-27345	-949	internal_fragment	FALSE	canonical	0	0	junction_4	1.17898261225516	6	23	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTATGCACAGGTGGGGAT	8456	False	NA	NA	False	NA	NA	NA	83652628	83600622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_83600827_83601994_83602176_83604428_83604585_83604665_83604702_83606795_83606928_83607716_83607803_83610750_83610880_83612252_83612323_83613193_83613400_83622380_83622591_83624247_83624424_83631399_83631592_83632341_83632475_83636545_83636668_83637167_83637264_83638340_83638412_83641225_83641406_83646429_83646667_83647698_83647838_83648316_83648464_83652519
59952	chrX	+	1131	9	NIC	ENSMUSG00000067768.13	novel	1200	9	NA	NA	-40	1	combination_of_known_junctions	FALSE	canonical	3	85	junction_1	78.4071903590481	60	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	72257997	72266057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72258064_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
59953	chr2	-	756	3	ISM	ENSMUSG00000086537.8	ENSMUST00000150276.2	1262	5	-14	2308	-14	-149	5prime_fragment	FALSE	canonical	1	2	junction_1	2	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTGCGAACTTTCTAAAG	NA	False	NA	NA	False	NA	NA	NA	174137196	174126294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_174126459_174127932_174128191_174136862
59954	chrX	-	461	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112172.4	768	3	154	153	-12	46	multi-exon	FALSE	canonical	3	1191	junction_1	25.5	34	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGATGAAATAGAGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	165992157	165990241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_165990532_165990932_165991048_165992101
59955	chr8	+	900	1	Antisense	novelGene_ENSMUSG00000053560.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGGGCGAGGGCAGCAAGC	NA	False	NA	NA	False	NA	NA	NA	85388574	85389474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85388600_85389500
59956	chr5	+	1012	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2650.35980614724	3	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTTTTTCTGTGTTAAG	NA	False	NA	NA	False	NA	NA	NA	108048435	108055913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051141_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
59957	chr19	+	1944	1	Intergenic	novelGene_1287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCACTTGGGAGGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	47347853	47349797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_47347900_47349800
59958	chr15	-	2056	1	FSM	ENSMUSG00000098176.3	ENSMUST00000182172.2	2584	1	520	8	507	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	93	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTCAGCCCCGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	75853784	75851728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75851700_75853800
59959	chr2	-	1527	1	Intergenic	novelGene_2788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTCAAATCCCAGCAACCA	NA	False	NA	-62	True	NA	NA	NA	167281392	167279865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_167279900_167281400
59960	chr17	+	1428	7	NNC	ENSMUSG00000040482.17	novel	1447	7	NA	NA	16	-6	intron_retention	FALSE	non_canonical	0	0	junction_4	62.5390988813309	199	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGGTCTCTTGCTGTGTC	2992	False	NA	NA	False	NA	NA	NA	35056010	35058156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057520_35057660_35057788_35057884_35057962
59961	chr19	-	1451	2	FSM	ENSMUSG00000045664.6	ENSMUST00000055458.6	3411	2	10	1950	10	-1950	multi-exon	FALSE	canonical	3	11	junction_1	0	78	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAAAACATGTTGCTGC	NA	False	NA	NA	False	NA	NA	NA	5974834	5967613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5969022_5974791
59962	chr11	+	1606	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	87	91	52	-91	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	2	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATGTCTTGTTTATTA	9328	False	NA	NA	False	NA	NA	NA	62770367	62785920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
59963	chr7	-	317	2	ISM	ENSMUSG00000019370.11	ENSMUST00000172594.2	648	3	9	1341	9	402	5prime_fragment	FALSE	canonical	3	2296	junction_1	0	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCCCTTCCATTCCCAGT	6417	False	NA	NA	False	NA	NA	NA	16651081	16650666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_16650902_16650999
59965	chr2	-	686	5	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-38	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	17493.1036322175	26	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTTCTGCTTCATGTT	NA	False	NA	NA	False	NA	NA	NA	38895172	38891597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_38891778_38893068_38893279_38894118_38894201_38894743_38894881_38895095
59966	chr14	+	1526	9	ISM	ENSMUSG00000039599.17	ENSMUST00000225834.2	1828	11	8153	4	-3090	-4	3prime_fragment	FALSE	canonical	3	13	junction_5	71.442284397967	22	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAAGTTCTTTATTACAT	NA	False	NA	NA	False	NA	NA	NA	20406459	20433553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_20406566_20408091_20408209_20413330_20413519_20424397_20424523_20425577_20425682_20428467_20428592_20428831_20428952_20431816_20431890_20432984
59967	chr9	-	830	4	NIC	ENSMUSG00000032112.11	novel	1220	5	NA	NA	12	-4	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	346.786197341628	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTGTTTTCTCTCCTA	1753	False	NA	NA	False	NA	NA	NA	44318617	44315061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44315396_44315630_44315758_44318100_44318276_44318423
59968	chr5	+	872	6	NIC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	10	457	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	613.293600162271	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGATTTTTTTTTTTCTC	9095	False	NA	NA	False	NA	NA	NA	124045354	124065653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_124045430_124046162_124046278_124060242_124060327_124062793_124062911_124065060_124065201_124065312
59969	chr7	-	464	4	Antisense	novelGene_ENSMUSG00000033685.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTACCACATCTGTAGG	NA	False	NA	NA	False	NA	NA	NA	100148641	100147372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100147380_100147579_100147654_100147939_100148123_100148441
59971	chr2	-	1104	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	16	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	404.200445323852	38	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATATGTGAAACATCCTT	NA	False	NA	NA	False	NA	NA	NA	152185936	152179354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179678_152180570_152180608_152181634_152181928_152184956_152185248_152185776
59972	chr16	+	2791	16	NNC	ENSMUSG00000022707.17	novel	2846	17	NA	NA	4	-2	intron_retention	TRUE	non_canonical	1	3	junction_14	9.28415615743055	20	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGACTAATGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	70111025	70366600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_70111184_70157745_70157916_70198621_70198738_70230432_70230559_70231401_70231538_70233815_70233907_70237997_70238208_70275193_70275310_70280708_70280837_70284915_70285015_70288821_70288933_70292115_70292288_70324004_70324190_70325767_70325900_70357912_70358030_70365876
59973	chr19	+	1437	2	ISM	ENSMUSG00000024959.15	ENSMUST00000235240.2	1169	3	300	0	-15	0	intron_retention	FALSE	canonical	3	98	junction_1	0	6	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9684	False	NA	NA	False	NA	NA	NA	6920231	6929261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6920415_6928007
59974	chr8	+	2598	6	FSM	ENSMUSG00000031903.8	ENSMUST00000212963.2	2578	6	-26	6	-26	-6	multi-exon	FALSE	canonical	1	1	junction_4	47.4088599314516	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGTAAGGTGCCTTGTC	6171	False	NA	NA	False	NA	NA	NA	106877004	106891338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887840_106887941_106889456
59975	chr9	+	2031	13	FSM	ENSMUSG00000023495.14	ENSMUST00000024260.14	2035	13	4	0	1	0	multi-exon	FALSE	canonical	3	316	junction_11	32.902212016148	138	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1604	False	NA	NA	False	NA	NA	NA	106331044	106341211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
59976	chr13	+	1167	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	10	868	10	-50	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	76	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGTACAATGTGAAAACAT	NA	False	NA	NA	False	NA	NA	NA	85337536	85360974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
59978	chr4	-	1779	2	FSM	ENSMUSG00000045973.19	ENSMUST00000132815.3	1005	2	10	-784	10	784	multi-exon	FALSE	canonical	3	9	junction_1	0	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTTTAAACAAATAAACAC	-6	True	NA	NA	False	NA	NA	NA	45408750	45398456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_45400180_45408694
59979	chr2	-	1418	11	ISM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	2503	6	2503	-2	3prime_fragment	FALSE	canonical	3	1239	junction_6	95.9293490022735	388	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGTGTGCTCTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	11605570	11590253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439_11601607_11602862_11602980_11605429
59980	chr4	+	551	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	-23	108	-23	-108	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTTTTGCCAGTCTCCG	-3	True	NA	NA	False	NA	NA	NA	10848396	10848947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_10848400_10848900
59981	chr12	+	1645	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	1	-1	combination_of_known_splicesites	FALSE	canonical	3	48	junction_3	144.53415668616	1	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTAAAGCAGTGATGGGT	NA	False	NA	NA	False	NA	NA	NA	109506884	109538152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
59982	chr16	-	3119	1	NIC	ENSMUSG00000022533.15	novel	7220	33	NA	NA	-5506	2020	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAAACCCACAGTGCACA	6390	False	NA	NA	False	NA	NA	NA	30181567	30178448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_30178400_30181600
59983	chr15	+	1063	7	NNC	ENSMUSG00000022551.9	novel	1520	7	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1766.42014789486	20	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAACATACACATTTTAG	NA	False	NA	NA	False	NA	NA	NA	76227732	76230125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229302_76229676_76229778_76229854
59987	chr14	+	601	2	Intergenic	novelGene_591	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAAAGGTGTGGCCTTG	36	False	NA	NA	False	NA	NA	NA	63748356	63749093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_63748805_63748940
59988	chr12	-	2785	3	ISM	ENSMUSG00000035329.8	ENSMUST00000043204.8	3688	4	13671	0	-365	0	3prime_fragment	FALSE	canonical	3	48	junction_1	1	34	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGATGAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	59252840	59247440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_59249466_59251096_59251783_59252766
59989	chr18	-	2380	1	Intergenic	novelGene_4558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATTTAAATCTGAGAGG	9419	False	NA	NA	False	NA	NA	NA	67426286	67423906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_67423900_67426300
59990	chr2	+	752	1	NIC	ENSMUSG00000026857.10	novel	1387	4	NA	NA	2588	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCAGATGCCCCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	30712274	30713026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30712300_30713000
59991	chr17	-	1465	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	31	0	-5	0	multi-exon	FALSE	canonical	3	306	junction_8	20.5156038175824	1246	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	24382709	24374806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
59992	chr17	-	1739	8	NNC	ENSMUSG00000023988.9	novel	3854	7	NA	NA	255	-1764	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	159.36609118758	4	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCAAAGTTGTGTCTCT	2596	False	NA	NA	False	NA	NA	NA	47922162	47912019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47912824_47913316_47913420_47913562_47913724_47914780_47914915_47915179_47915319_47917763_47917927_47921831_47921933_47922028
59993	chr4	-	2331	2	FSM	ENSMUSG00000046312.5	ENSMUST00000149596.2	725	2	371	-1977	371	-1913	multi-exon	FALSE	canonical	3	10	junction_1	0	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGGATGAGGTCGCCTA	6669	False	NA	NA	False	NA	NA	NA	41502297	41497516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41499691_41502140
59994	chr19	-	951	2	Antisense	novelGene_ENSMUSG00000058927.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCCGCGCCTATGTACCG	8045	False	NA	NA	False	NA	NA	NA	24854221	24853034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_24853122_24853357
59995	chr7	-	2153	4	Intergenic	novelGene_3011	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	72	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCGGACTCCAGGAAAA	5289	False	NA	NA	False	NA	NA	NA	103877824	103868022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_103868090_103874709_103875184_103876011_103876369_103876569
59996	chr11	+	1924	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	26	0	7	0	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	2	89	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68936503	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
59998	chr19	-	752	1	Genic_Genomic	ENSMUSG00000024654.9	novel	NA	NA	NA	NA	2963	642	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGAGAGACACTGTT	NA	False	NA	NA	False	NA	NA	NA	9109932	9109180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_9109200_9109900
59999	chr16	+	2031	9	NNC	ENSMUSG00000022800.15	novel	4312	9	NA	NA	18	136	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	205.417258281771	1	114	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAACAAAAATCTACTTATA	NA	False	NA	NA	False	NA	NA	NA	32698200	32727016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721076_32722788_32722916_32725901
60001	chr8	-	1245	10	NIC	ENSMUSG00000038000.11	novel	3154	11	NA	NA	-3	-22	combination_of_known_junctions	FALSE	canonical	2	10	junction_4	63.9878460681749	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAAATAATTTCATGCG	NA	False	NA	NA	False	NA	NA	NA	106427720	106424811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
60002	chrX	-	803	7	FSM	ENSMUSG00000031388.15	ENSMUST00000114391.10	834	7	51	-20	-1	-1	multi-exon	FALSE	canonical	2	4	junction_2	477.944789931036	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAGTGGGGTATGCTTTT	NA	False	NA	NA	False	NA	NA	NA	72965439	72960481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72960802_72961448_72961534_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
60003	chr4	-	950	8	NNC	ENSMUSG00000028447.12	novel	973	7	NA	NA	-13	-153	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	400.02408090779	2173	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGAGCCTGTTGGCCTG	4	True	NA	NA	False	NA	NA	NA	41723150	41714950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41715260_41715395_41715456_41716395_41716455_41716968_41717119_41717356_41717441_41719836_41719924_41720782_41720868_41723034
60005	chr17	-	2804	2	FSM	ENSMUSG00000047123.9	ENSMUST00000058136.9	2992	2	34	154	34	-154	multi-exon	FALSE	canonical	2	2	junction_1	0	22	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTCATAAGCCAGCGTC	847	False	NA	NA	False	NA	NA	NA	56583752	56576472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56579218_56583693
60006	chr17	-	1428	7	FSM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	-379	30	-379	-23	multi-exon	FALSE	canonical	3	1264	junction_4	57.4071714451542	5967	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAATAAAGCTGTGTCTC	3917	False	NA	NA	False	NA	NA	NA	36227660	36221300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
60007	chr17	-	1281	7	NIC	ENSMUSG00000061232.17	novel	1570	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	37.6449052182216	19	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACTATGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	34219257	34214997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218707_34218978_34219167
60008	chr11	+	2028	12	Antisense	novelGene_ENSMUSG00000020530.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	24	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAAGGCAAACAGAACAG	NA	False	NA	NA	False	NA	NA	NA	84723802	84753145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_84724039_84725159_84725410_84727190_84727342_84727425_84727549_84728664_84728814_84730805_84731002_84731086_84731261_84732245_84732453_84744881_84744996_84749266_84749361_84751372_84751625_84753063
60009	chr6	-	3282	4	ISM	ENSMUSG00000055003.15	ENSMUST00000168793.8	3407	5	4809	11	4809	-11	3prime_fragment	FALSE	canonical	0	0	junction_3	0.816496580927726	6	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTATGTATTCCCTTGC	NA	False	NA	NA	False	NA	NA	NA	119301356	119292104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_119294472_119297381_119297973_119300609_119300739_119301161
60010	chr17	+	1823	4	NNC	ENSMUSG00000024014.9	novel	2698	6	NA	NA	45	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	842.204382689987	40	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTGTCTTAAACCTTTG	NA	False	NA	NA	False	NA	NA	NA	29709771	29715071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29709874_29710969_29711006_29712695_29712873_29713563
60011	chr1	-	878	6	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2566.9608489418	4	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16174625	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172829_16173054_16173391_16173559_16173733_16173909_16174588
60013	chr9	-	2306	8	NIC	ENSMUSG00000033419.17	novel	4150	26	NA	NA	62	4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	9.35687022503589	33	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAACGTAATCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	86680864	86647981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_86649390_86651511_86651615_86655571_86655677_86657644_86657745_86659086_86659118_86663622_86663773_86665352_86665488_86680590
60014	chr7	+	1775	3	FSM	ENSMUSG00000010307.8	ENSMUST00000010451.8	1831	3	50	6	50	-6	multi-exon	FALSE	canonical	3	21	junction_1	1	68	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCATTGGCTTCCTGACT	NA	False	NA	NA	False	NA	NA	NA	46700398	46704519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46700550_46702597_46702863_46703160
60015	chr19	-	1909	10	NNC	ENSMUSG00000024885.10	novel	1924	10	NA	NA	-1048	-43	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	2.58198889747161	46	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTATCGTCGTGGAAGTAT	NA	False	NA	NA	False	NA	NA	NA	3980856	3963533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3980715
60016	chr7	+	538	2	ISM	ENSMUSG00000006154.14	ENSMUST00000164987.2	676	4	916	36	916	-32	3prime_fragment	FALSE	canonical	0	0	junction_1	0	3	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCGCTATAAACAGCCTC	797	False	NA	NA	False	NA	NA	NA	4481580	4482207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4481751_4481839
60017	chr11	+	1362	3	FSM	ENSMUSG00000048277.16	ENSMUST00000175737.2	785	3	-27	-550	2	-1	multi-exon	FALSE	canonical	3	9	junction_2	289.5	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTTGTGCTGGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	117700510	117705108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117700630_117703284_117703523_117704103
60018	chrX	+	3268	4	FSM	ENSMUSG00000071665.11	ENSMUST00000096265.10	3210	4	-55	-3	-55	3	multi-exon	FALSE	canonical	1	1	junction_1	0.942809041582063	17	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGTTGATGTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	151901726	151915860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_151901847_151902010_151902087_151909895_151909940_151912832
60019	chrX	+	3082	5	ISM	ENSMUSG00000009731.5	ENSMUST00000009875.5	5287	6	32	6095	14	-6095	5prime_fragment	FALSE	canonical	3	21	junction_2	2.95803989154981	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAATGGGGCCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	7688559	7698424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331
60020	chr10	+	3851	1	FSM	ENSMUSG00000039485.9	ENSMUST00000047935.8	3879	1	8	20	8	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	37	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATGTGAATAAAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	34173445	34177296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_34173400_34177300
60021	chr7	+	1195	1	NIC	ENSMUSG00000030795.19	novel	5536	15	NA	NA	1418	796	mono-exon	FALSE	NA	NA	NA	NA	NA	11	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTCCCAAAGCTAACTAA	6937	False	NA	NA	False	NA	NA	NA	127580805	127582000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127580800_127582000
60024	chr11	+	1302	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53086	-397	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	38	1	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGATGGTTGTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	62402519	62404846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62402636_62402963_62403098_62403794
60026	chr12	+	1154	8	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	39	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1352.81324412108	2	46	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGAATTTTAAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	87313522	87320735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317177_87319340_87319457_87319896_87319999_87320220_87320273_87320364
60027	chr11	-	1741	4	NIC	ENSMUSG00000020743.16	novel	1656	5	NA	NA	19	-22	intron_retention	FALSE	canonical	3	339	junction_1	27.7168220079832	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCTTTTCTGAAACCA	NA	False	NA	NA	False	NA	NA	NA	115503310	115498765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728
60028	chr2	+	1398	6	ISM	ENSMUSG00000027357.17	ENSMUST00000124836.8	1267	7	2174	-320	2170	-24	3prime_fragment	FALSE	canonical	3	562	junction_1	87.6173498800323	147	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGGAAAAAAATCCATGCC	1686	False	NA	NA	False	NA	NA	NA	132691827	132708681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_132691924_132696812_132696943_132703128_132703215_132704254_132704324_132706009_132706102_132707756
60030	chr9	-	466	3	NNC	ENSMUSG00000007892.9	novel	499	3	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6124	4	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGGTGGACTGGTCTCAC	NA	False	NA	NA	False	NA	NA	NA	61821821	61820568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_61820804_61821169_61821245_61821665
60031	chr4	-	2058	8	ISM	ENSMUSG00000054362.10	ENSMUST00000106788.2	1569	10	1445	-401	1445	0	3prime_fragment	FALSE	canonical	1	5	junction_3	4.52656557650139	35	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGGTTCTACCAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	106472990	106448105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_106448885_106464485_106464620_106467596_106467723_106468609_106468772_106470305_106470450_106470564_106470700_106472231_106472355_106472535
60032	chr2	+	1813	5	Intergenic	novelGene_2817	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	18.0346887968714	6	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATTAAAGGCATATGTT	NA	False	NA	NA	False	NA	NA	NA	172419560	172468664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172419745_172420215_172420303_172449327_172449528_172467241_172468060_172468140
60033	chr4	-	562	4	NNC	ENSMUSG00000028234.7	novel	3706	4	NA	NA	74	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3918.55112112741	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCAAATTTTGCTGGCTT	7	False	NA	NA	False	NA	NA	NA	3835591	3834477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3834684_3834935_3835010_3835117_3835292_3835483
60035	chr6	-	1600	4	FSM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	-40	50	-11	-1	multi-exon	FALSE	canonical	3	36	junction_1	18.9267594221045	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAGAATTGATTTACTTA	NA	False	NA	NA	False	NA	NA	NA	134874861	134846120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_134847446_134864592_134864749_134874124_134874177_134874794
60036	chr6	-	1463	12	NNC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	5	31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	281.90230416034	1	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGGAAAACTAGTCTAGAC	NA	False	NA	NA	False	NA	NA	NA	148113498	148082776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148097480_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
60037	chr6	-	177	1	FSM	ENSMUSG00000065036.3	ENSMUST00000083102.3	134	1	-2	-41	-2	41	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGACAGGTATGCAGGATG	7989	False	NA	NA	False	NA	NA	NA	131357371	131357194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_131357200_131357400
60039	chr5	+	1196	4	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-8	0	intron_retention	FALSE	canonical	3	22	junction_1	282.15007826805	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGTTCCTGTTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	124254176	124256254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124254675_124255038_124255257_124255333_124255452_124255892
60041	chr11	+	1530	1	Genic_Genomic	ENSMUSG00000024414.14	novel	NA	NA	NA	NA	4669	140	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCCCATGTACACATACC	NA	False	NA	NA	False	NA	NA	NA	94549525	94551055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_94549500_94551100
60042	chrX	-	2879	16	FSM	ENSMUSG00000067878.14	ENSMUST00000114766.8	2891	16	12	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	2.18682926224756	20	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCTGTTGTCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	55867674	55843217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_55843463_55844649_55845030_55846362_55846553_55847120_55847203_55849725_55849831_55850759_55850905_55853203_55853331_55854977_55855151_55855397_55855526_55856222_55856912_55858674_55858768_55860884_55860994_55862635_55862800_55864035_55864114_55864203_55864297_55867596
60043	chr7	-	4424	1	Genic_Genomic	ENSMUSG00000006310.11	novel	NA	NA	NA	NA	-6	3480	mono-exon	FALSE	NA	NA	NA	NA	NA	3	53	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCATGATGTTAGGAATTA	NA	False	NA	NA	False	NA	NA	NA	30298300	30293876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_30293900_30298300
60045	chr8	-	1545	8	NNC	ENSMUSG00000004994.13	novel	1441	9	NA	NA	-2	-520	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	83.2598587653898	6	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAAATTCTAGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	84997011	84986263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84987096_84987171_84987315_84988368_84988430_84989585_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
60046	chr3	+	1300	8	NNC	ENSMUSG00000004127.13	novel	4025	8	NA	NA	-3	1301	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	85.1800014854498	6	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCGTTTGGTTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	137849274	137862880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137849353_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860608_137862465
60047	chr2	+	922	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	5	8	5	-7	multi-exon	FALSE	canonical	3	388	junction_2	22.7909756576714	1475	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGGCATTCTGTTTGGAG	65	False	NA	NA	False	NA	NA	NA	18677238	18681034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
60048	chr8	-	2759	15	Antisense	novelGene_ENSMUSG00000059854.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGCAGCCTAGGGGCGG	6808	False	NA	NA	False	NA	NA	NA	111252398	111227164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_111227449_111229555_111229686_111231800_111231932_111232374_111232509_111232722_111232852_111233057_111233248_111233508_111233661_111235513_111235754_111237465_111237630_111239622_111239798_111240745_111240918_111241459_111241633_111245709_111245931_111249700_111249839_111252072
60049	chr6	-	1579	1	Antisense	novelGene_ENSMUSG00000030030.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAACCTTCAAGTCTGTG	3900	False	NA	NA	False	NA	NA	NA	83139361	83137782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83137800_83139400
60051	chr11	+	2534	16	NNC	ENSMUSG00000020892.11	novel	3019	15	NA	NA	-345	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	4.27707064862545	50	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTGTTTTGATGATG	272	False	NA	NA	False	NA	NA	NA	69016376	69039941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69016481_69017310_69017376_69018151_69018357_69019440_69019523_69020391_69020512_69020830_69020957_69023558_69023663_69023854_69024028_69024763_69024908_69024989_69025194_69025282_69025370_69025831_69026002_69026697_69026820_69033011_69033113_69033672_69033844_69039385
60052	chr1	-	2037	9	ISM	ENSMUSG00000026670.16	ENSMUST00000111350.10	2311	10	8011	64	-4995	0	3prime_fragment	FALSE	canonical	3	102	junction_2	70.2317591976735	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTTGTTTCTACCTTAA	NA	False	NA	NA	False	NA	NA	NA	169994515	169969570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_169970142_169970965_169971033_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194
60053	chr7	+	1487	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	21	2	1	-2	multi-exon	FALSE	canonical	3	96	junction_1	13.490737563232	360	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGAAGGCTTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	79992872	79996460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
60054	chr6	-	1251	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5530	2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	55.8631139482933	23	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTAGGCGGACTTTGCTT	2814	False	NA	NA	False	NA	NA	NA	83674995	83669785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672825_83673961_83674051_83674880
60055	chr4	+	1489	11	NNC	ENSMUSG00000040945.14	novel	3767	13	NA	NA	927	-1806	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1400.28517095626	3	18	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCTGCCTTTCTACGA	3308	False	NA	NA	False	NA	NA	NA	140429710	140448725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140429747_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140448373
60056	chr17	-	2094	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	-14	20	-4	-17	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAACCTAAAACCTCCAAA	NA	False	NA	NA	False	NA	NA	NA	46991844	46985495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
60059	chr7	+	2030	15	NIC	ENSMUSG00000030924.17	novel	2492	20	NA	NA	39	-15	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	12.6877733206712	5	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATGCCTAAAACTCAAAA	NA	False	NA	NA	False	NA	NA	NA	119393412	119448146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_119393726_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525_119426600_119427314_119427430_119431893_119431999_119433486_119433625_119442464_119442558_119443070_119443288_119447954
60060	chr14	-	1609	4	Intergenic	novelGene_522	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	32	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGGACAGAATGT	NA	False	NA	NA	False	NA	NA	NA	17970785	17958281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_17959326_17965695_17965847_17968999_17969114_17970485
60061	chr3	+	1962	5	ISM	ENSMUSG00000051278.13	ENSMUST00000196341.2	2994	16	29668	-1030	19198	-1	3prime_fragment	TRUE	canonical	1	18	junction_1	26.6176633084123	32	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGAATTCTTATGTGGA	NA	False	NA	NA	False	NA	NA	NA	127407076	127411664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_127407116_127408775_127408953_127409085_127409221_127409907_127410170_127410315
60062	chr7	-	706	5	NNC	ENSMUSG00000003429.12	novel	493	5	NA	NA	-32	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13006.0313388635	4	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGAACAGGCTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	44773807	44771812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44771973_44772243_44772475_44772566_44772663_44772842_44772975_44773720
60063	chr7	-	2974	1	FSM	ENSMUSG00000074006.4	ENSMUST00000098281.4	2144	1	-838	8	-838	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	9	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCCCTCCCCTCTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	97795547	97792573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_97792600_97795500
60064	chr7	+	929	5	FSM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	5	0	5	0	multi-exon	FALSE	canonical	3	145	junction_3	373.339992500134	1215	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	15630053	15637945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_15630183_15631328_15631478_15632369_15632542_15636774_15636933_15637624
60065	chr2	+	1457	6	NNC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	48	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	90.5286694920455	2	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTCTTTATCTTTTCA	7327	False	NA	NA	False	NA	NA	NA	125994108	126007173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_125994135_125996465_125996781_125999714_125999901_126000329_126000474_126001689_126001949_126006646
60066	chr15	+	2159	8	NIC	ENSMUSG00000022550.19	novel	2026	15	NA	NA	-4343	2	intron_retention	FALSE	canonical	2	13	junction_2	47.6637885054669	1	85	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATCGTTTTCTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	76473294	76480011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76473419_76477433_76477510_76477635_76477832_76477918_76478648_76478728_76478953_76479046_76479467_76479536_76479654_76479738
60068	chr2	-	1209	1	NIC	ENSMUSG00000034906.16	novel	2695	18	NA	NA	-419	4820	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCGCGACATATTCCCA	NA	False	NA	NA	False	NA	NA	NA	126959221	126958012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_126958000_126959200
60069	chr5	-	3316	2	Antisense	novelGene_ENSMUSG00000029343.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	208	93	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTAGCCACTTCACAAC	4608	False	NA	NA	False	NA	NA	NA	112415369	112411969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_112412832_112412915
60070	chr6	+	1046	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-15	540	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	93.688609529417	355	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	808	False	NA	NA	False	NA	NA	NA	52079958	52090048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52080017_52083750_52083877_52088920_52089066_52089331
60072	chr4	+	660	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	100	4	-26	-4	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	2199	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTTGTGAGTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	155888077	155893284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
60073	chr2	-	1443	9	NNC	ENSMUSG00000026727.11	novel	1546	9	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	118.306210213158	5	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATATCACACGTTTCTTC	7055	False	NA	NA	False	NA	NA	NA	13276214	13081825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223903_13229167_13229237_13246555_13246607_13275721_13275834_13276010
60074	chr10	+	1257	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6087	290	multi-exon	FALSE	canonical	2	11	junction_1	0	139	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTATTCTAGAGTCATA	NA	False	NA	NA	False	NA	NA	NA	100186009	100193269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_100186070_100192072
60076	chr14	+	1536	6	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	12	25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	709.032298277025	1	86	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGATTGTGTGTTCTTT	1877	False	NA	NA	False	NA	NA	NA	26359419	26377994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375099_26377050
60077	chrX	+	1150	5	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5140.90018260421	1	64	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060821_36060910_36060983_36061388_36061530_36062039
60079	chr10	-	1814	8	NNC	ENSMUSG00000035781.15	novel	1898	8	NA	NA	-3	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	59.0852030925662	312	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCCTGTCCCCGTGTTTG	9766	False	NA	NA	False	NA	NA	NA	79752756	79745887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748318_79748482_79748604_79749058_79749181_79749390_79749546_79752656
60080	chr12	-	1241	1	Antisense	novelGene_ENSMUSG00000079104.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATTGGCCTTCTTCCGT	NA	False	NA	NA	False	NA	NA	NA	57287056	57285815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_57285800_57287100
60081	chr18	-	952	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	443.636112145979	8	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTATCTGTTGCTC	NA	False	NA	NA	False	NA	NA	NA	77855458	77845266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848636_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
60083	chr18	+	1467	8	NNC	ENSMUSG00000042705.10	novel	1610	7	NA	NA	-4	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	484.581915317794	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCTGAGAATTATTTAAAC	NA	False	NA	NA	False	NA	NA	NA	47091916	47221043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094_47220616_47220705
60085	chr8	+	1540	2	Intergenic	novelGene_1659	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAAGAAGCGGACTCAGG	2315	False	NA	NA	False	NA	NA	NA	71028924	71030569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_71030301_71030405
60086	chr19	+	2175	10	FSM	ENSMUSG00000024663.21	ENSMUST00000113161.10	5146	10	57	2914	-15	2	multi-exon	FALSE	canonical	3	20	junction_4	9.36897954837013	35	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGCAGTGGCCTTCACTC	4024	False	NA	NA	False	NA	NA	NA	9995613	10012827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
60087	chr7	+	1862	5	NNC	ENSMUSG00000003865.17	novel	2681	15	NA	NA	107	-4	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	102.193444016727	1	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACTGTGGCTGGACATAA	NA	False	NA	NA	False	NA	NA	NA	45097784	45106039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45097804_45100986_45101083_45101247_45101339_45104245_45104327_45104464
60089	chr14	+	1442	7	NNC	ENSMUSG00000021868.8	novel	1549	6	NA	NA	4	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.805846340744	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCCTATTTTCTATAAAA	396	False	NA	NA	False	NA	NA	NA	25694597	25700872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25694693_25694775_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
60090	chr9	-	1604	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	91	-526	77	526	multi-exon	TRUE	canonical	3	173	junction_1	9.03081145609604	1612	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGGAAGGAGCATGTGG	NA	False	NA	NA	False	NA	NA	NA	117979154	117893063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
60091	chr7	+	1393	2	FSM	ENSMUSG00000053877.13	ENSMUST00000186759.2	598	2	-46	-749	-46	749	multi-exon	FALSE	canonical	3	63	junction_1	0	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAGACTAAAATCATATT	NA	False	NA	NA	False	NA	NA	NA	127115118	127119890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127115374_127118752
60092	chr1	+	2263	14	NIC	ENSMUSG00000026305.16	novel	2760	23	NA	NA	4	-9	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	30.9888317351218	55	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAACATTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	90981179	91056631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91038076_91038170_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
60093	chr5	-	2549	3	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	3469	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	329	6	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAAGTGTGGAAACGTG	NA	False	NA	NA	False	NA	NA	NA	65792790	65765119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65767539_65772606_65772694_65792747
60094	chr17	+	1486	13	NIC	ENSMUSG00000024069.15	novel	2148	14	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	55.5	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTGTGGCAGTGAGGT	NA	False	NA	NA	False	NA	NA	NA	74702615	74730662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
60095	chr14	-	1195	2	FSM	ENSMUSG00000021917.17	ENSMUST00000226290.2	1241	2	36	10	17	-10	multi-exon	FALSE	canonical	3	1787	junction_1	0	10	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAACTTGTACTACATTT	NA	False	NA	NA	False	NA	NA	NA	30723290	30721794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30722861_30723161
60096	chr5	-	3300	28	FSM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	9	1403	9	-1403	multi-exon	TRUE	canonical	2	12	junction_13	5.06365515872966	35	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCCCACCCCCACCC	9192	False	NA	NA	False	NA	NA	NA	120726729	120673620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_120674290_120675625_120675707_120675876_120676017_120677067_120677153_120677274_120677344_120677853_120677901_120678638_120678755_120679942_120680033_120680519_120680592_120681409_120681518_120682477_120682551_120683139_120683194_120683322_120683380_120685513_120685559_120685999_120686064_120686335_120686385_120687555_120687681_120687990_120688108_120691507_120691608_120691817_120691877_120692340_120692376_120693197_120693287_120693932_120694064_120694536_120694651_120695834_120696012_120698280_120698409_120723249_120723494_120726567
60097	chr1	-	2036	12	NNC	ENSMUSG00000036086.17	novel	1913	13	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	69.5979006047958	69	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTGATATGTGTGATTGG	NA	False	NA	NA	False	NA	NA	NA	128030196	127914848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_128019562_128019748_128029989
60098	chr9	+	804	2	Genic_Genomic	ENSMUSG00000099927.2	novel	798	1	NA	NA	-27	55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAGACACATCC	NA	False	NA	NA	False	NA	NA	NA	84306009	84306889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_84306432_84306507
60099	chr8	-	1478	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	11	98	-1	-98	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	764	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATTAAGTAGTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	86159451	86135485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
60100	chr11	-	1886	2	Antisense	novelGene_ENSMUSG00000018411.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	39	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	104180048	104177048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_104178875_104179988
60101	chr6	-	985	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	21	-1247	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.009293519759	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTCCAAAAGTGCCCT	NA	False	NA	NA	False	NA	NA	NA	81942918	81936078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_81936148_81938894_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
60102	chr19	+	983	1	NIC	ENSMUSG00000024856.11	novel	1080	4	NA	NA	623	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTCTCTCAGCCTTTCT	7719	False	NA	NA	False	NA	NA	NA	4148024	4149007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4148000_4149000
60103	chr12	-	2094	6	ISM	ENSMUSG00000020628.17	ENSMUST00000223552.2	2614	7	46	8747	-1	-2047	5prime_fragment	FALSE	canonical	3	62	junction_5	16.9422548676379	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTCTTAAAGGAGTACAG	8319	False	NA	NA	False	NA	NA	NA	28800382	28761552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800327
60104	chr12	+	1908	9	NNC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	143.50778506757	3	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGATGGGTGTGCTAC	NA	False	NA	NA	False	NA	NA	NA	109506881	109538159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512421_109515624_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
60106	chr9	-	1366	9	NNC	ENSMUSG00000011114.19	novel	1984	9	NA	NA	-34	-77	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	568.47355919163	6	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTTTCATTGTGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	37568498	37560554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_37560800_37561326_37561470_37562244_37562354_37562595_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
60107	chr9	-	1916	12	NNC	ENSMUSG00000049313.9	novel	10715	48	NA	NA	-2967	1513	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	177.662741132678	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGAAAACTGTTCAGAGT	5531	False	NA	NA	False	NA	NA	NA	41900097	41879521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_41879967_41880939_41881153_41885232_41885426_41887653_41887761_41888731_41888907_41890625_41890791_41891921_41892042_41894201_41894387_41895731_41895832_41896853_41896937_41898761_41898835_41900040
60108	chr5	+	1491	9	NNC	ENSMUSG00000029089.9	novel	1616	9	NA	NA	-27	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	42.7141662683471	1	20	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGATATTGTAGTTCTACA	NA	False	NA	NA	False	NA	NA	NA	48529747	48546182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48541730_48541779_48545444
60111	chr6	-	1696	4	NNC	ENSMUSG00000032641.19	novel	1610	4	NA	NA	-16	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	35.863940416834	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGTTCCTGTGGATTTT	NA	False	NA	NA	False	NA	NA	NA	134874866	134846057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_134847474_134864592_134864749_134874124_134874177_134874794
60112	chr7	+	4791	29	Antisense	novelGene_ENSMUSG00000098353.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	91	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGACGCACTTCCTCAAT	NA	False	NA	NA	False	NA	NA	NA	65919597	66038067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_65919634_65920470_65920666_65922560_65922843_65924523_65924722_65928270_65928435_65928938_65929192_65931375_65931518_65931923_65932086_65934982_65935155_65937187_65937468_65938834_65938996_65939363_65939484_65940476_65940648_65942003_65942168_65944539_65944759_65945162_65945274_65945868_65945999_65950609_65950689_65952403_65952515_65955139_65955279_65956592_65956759_65956854_65956979_65958406_65958635_65980415_65980565_65982025_65982205_65982860_65983034_65992508_65992678_66031200_66031418_66037970
60114	chr17	+	1960	1	ISM	ENSMUSG00000040276.16	ENSMUST00000045896.11	4176	10	53397	207	2411	-207	mono-exon	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCGCCACTGCGTCTGC	NA	False	NA	NA	False	NA	NA	NA	27927918	27929878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_27927900_27929900
60115	chr1	-	833	6	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1010	0	575	0	3prime_fragment	FALSE	canonical	3	5309	junction_1	712.412801681722	2	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16173876	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733
60116	chr17	-	2480	5	Intergenic	novelGene_64	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.29903810567666	283	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGCTCCGGTTCGAAACA	NA	False	NA	NA	False	NA	NA	NA	17734522	17724976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17725210_17727152_17727221_17730730_17730805_17731410_17731489_17732495
60117	chrX	-	1495	8	NNC	ENSMUSG00000057836.13	novel	1645	9	NA	NA	-81	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	563.42574615345	1	76	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	72138690	72129900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134569_72135420_72135498_72136875_72136911_72137788_72137859_72138566
60118	chr15	+	4007	28	NNC	ENSMUSG00000015365.16	novel	4133	27	NA	NA	-29	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	18.8627269803653	1	185	19	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCTTTCTGTCTCAGAA	2963	False	NA	NA	False	NA	NA	NA	88867167	88939353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565_88895635_88896114_88896188_88896254_88896399_88902352_88902453_88904463_88904643_88905366_88905504_88906196_88906326_88907815_88907916_88908869_88909035_88910665_88910840_88931009_88931160_88937580_88937689_88938429_88938568_88938713_88938834_88939018
60121	chr5	-	1537	4	NIC	ENSMUSG00000097772.8	novel	626	5	NA	NA	13	-51	intron_retention	FALSE	canonical	3	343	junction_3	7.1336448530109	10	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATACACAATATGTAAATAA	NA	False	NA	NA	False	NA	NA	NA	100577361	100568751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100569901_100574594_100574664_100576955_100577098_100577184
60123	chr5	-	1422	1	Intergenic	novelGene_688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTAGAGAGACAGGGT	2130	False	NA	NA	False	NA	NA	NA	32783498	32782076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_32782100_32783500
60125	chr5	+	1284	9	Fusion	ENSMUSG00000063646.19_ENSMUSG00000113373.2	novel	516	2	NA	NA	53	-7	multi-exon	FALSE	non_canonical	0	0	junction_1	59.7656883169599	2	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATATTTTGCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37185731	37282636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_37185853_37262162_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
60126	chr6	+	1686	12	FSM	ENSMUSG00000030166.15	ENSMUST00000162461.7	1693	12	7	0	5	0	multi-exon	FALSE	canonical	3	22	junction_8	13.1028985500622	165	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTTTGGCTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	119879670	119899784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119895748_119895886_119896039_119897070_119897152_119897767_119897990_119899432
60127	chr9	+	2967	17	ISM	ENSMUSG00000006676.17	ENSMUST00000194171.6	3252	19	472	38	-434	-36	3prime_fragment	FALSE	canonical	3	70	junction_16	68.2554942843431	14	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATTTAAAGTGTTAATAAA	NA	False	NA	NA	False	NA	NA	NA	108372300	108378860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108378392
60128	chr3	-	2890	10	FSM	ENSMUSG00000028020.17	ENSMUST00000029654.15	3029	10	111	28	-21	-28	multi-exon	TRUE	canonical	3	21	junction_1	6.91214711777591	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTAAAAGTATTATTTGTG	NA	False	NA	NA	False	NA	NA	NA	80820856	80750933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_80752565_80758214_80758508_80763091_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
60129	chr19	-	416	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	-42	268	-42	-268	mono-exon	FALSE	NA	NA	NA	NA	NA	122	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCCAGGGTTCACATTG	NA	False	NA	NA	False	NA	NA	NA	37273237	37272821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_37272800_37273200
60130	chr10	+	1457	4	ISM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	40	7273	-16	202	5prime_fragment	FALSE	canonical	0	0	junction_2	48.0069439421701	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGCCAGTCCTTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	76869085	76878992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615
60131	chr11	+	2049	9	NIC	ENSMUSG00000020521.8	novel	382	3	NA	NA	268	-2480	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	100.524794826948	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTGGTGGACCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	86375823	86387371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_86376044_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
60134	chr10	-	1364	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	199	3	71	-3	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	201	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCTGACTTGTCACTGT	NA	False	NA	NA	False	NA	NA	NA	80235185	80228375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
60135	chr7	-	1142	9	Antisense	novelGene_ENSMUSG00000039018.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	90	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGATGTGCTGATGATGT	NA	False	NA	NA	False	NA	NA	NA	139730528	139720115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_139720211_139723647_139723728_139724249_139724309_139724540_139724631_139725907_139725971_139726721_139726820_139727164_139727247_139729659_139729771_139730064
60137	chr8	+	3581	16	FSM	ENSMUSG00000014786.9	ENSMUST00000073149.7	3499	16	522	-604	522	-534	multi-exon	FALSE	canonical	0	0	junction_14	2.98589275687449	20	46	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTCCTCTGTCCATTT	NA	False	NA	NA	False	NA	NA	NA	106075996	106095979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106076205_106080054_106080358_106081775_106081940_106082102_106082182_106082478_106082657_106083162_106083384_106083602_106083806_106084025_106084116_106084212_106084284_106085005_106085136_106085723_106085813_106085958_106086086_106089894_106090066_106090568_106090639_106091313_106091449_106094637
60138	chr14	+	1136	1	Intergenic	novelGene_544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCTGGAATGAAAATATT	3352	False	NA	NA	False	NA	NA	NA	40560521	40561657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_40560500_40561700
60140	chr11	-	974	2	NNC	ENSMUSG00000007777.10	novel	813	2	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	25	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATGTGTATGAATGC	5210	False	NA	NA	False	NA	NA	NA	51579454	51576213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51576920_51579186
60141	chr9	+	834	3	Genic_Genomic	ENSMUSG00000049932.4	novel	1384	1	NA	NA	-3	-13	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTAAAAAAGTGGTTT	5250	False	NA	NA	False	NA	NA	NA	44245987	44247361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_44246425_44246902_44247161_44247222
60144	chr2	+	2062	1	Genic_Genomic	ENSMUSG00000018209.16	novel	NA	NA	NA	NA	-57	-2990	mono-exon	FALSE	NA	NA	NA	NA	NA	3	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGATCTCCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	163923459	163925521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_163923500_163925500
60145	chr4	+	3293	17	Antisense	novelGene_ENSMUSG00000028649.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	15	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGCAGTTCCTTGTGCC	NA	False	NA	NA	False	NA	NA	NA	123332354	123359262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_123332460_123333233_123333363_123334339_123334588_123335397_123335457_123338625_123338749_123341896_123342054_123343752_123343920_123345827_123346144_123346613_123346823_123348786_123348911_123349150_123349333_123350028_123350546_123351581_123351803_123352942_123353180_123354876_123355028_123357330_123357560_123359143
60146	chr17	+	2103	16	NIC	ENSMUSG00000040828.11	novel	2557	22	NA	NA	4070	-2	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	3.07245829914744	34	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGGATCAGGTTGCTAA	7517	False	NA	NA	False	NA	NA	NA	56939220	56971452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56939367_56940509_56940583_56943270_56943336_56948476_56948591_56954727_56954812_56957742_56957894_56958794_56958891_56959456_56959540_56960579_56960757_56962096_56962187_56962988_56963048_56967170_56967246_56968241_56968371_56969661_56969846_56970267_56970426_56971033
60147	chr4	-	1679	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	76	0	76	0	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	2	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	NA	False	NA	NA	NA	107110653	107090710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
60148	chr2	+	988	4	FSM	ENSMUSG00000035268.15	ENSMUST00000064703.13	1036	4	44	4	-15	-2	multi-exon	FALSE	canonical	3	323	junction_1	29.6348143611905	264	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGCTTATGATCTTTT	8647	False	NA	NA	False	NA	NA	NA	163500362	163568070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_163500413_163545405_163545476_163563047_163563222_163567376
60149	chr16	-	1351	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	203	3968	203	-3968	multi-exon	FALSE	canonical	3	170	junction_1	18.5	481	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCCTGTGTGCCTTAGAA	NA	False	NA	NA	False	NA	NA	NA	64591321	64586466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_64587357_64589286_64589526_64591099
60152	chr8	+	1204	12	NNC	ENSMUSG00000031629.15	novel	2931	13	NA	NA	-1	199	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	91.6425863688036	5	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCATCACCAGGCATAAGCT	NA	False	NA	NA	False	NA	NA	NA	47005094	47031612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015486_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
60153	chrX	+	977	2	Intergenic	novelGene_4050	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	48	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGATGAAGCGGTATCCA	NA	False	NA	NA	False	NA	NA	NA	125443053	125444073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_125443159_125443201
60155	chr9	-	1506	6	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	60	-77	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.3172846919195	5	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCACAGCAGGCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	114762887	114729582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114730443_114740017_114740057_114743393_114743533_114746048_114746190_114749589_114749768_114762738
60157	chr11	-	3348	2	ISM	ENSMUSG00000036391.17	ENSMUST00000154325.2	4273	3	7196	453	0	-453	3prime_fragment	FALSE	canonical	3	83	junction_1	0	11	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATCCCAGCTTTCATT	3773	False	NA	NA	False	NA	NA	NA	51647265	51631841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51634828_51646903
60159	chr12	-	1983	5	ISM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	53	30570	4	-20	5prime_fragment	FALSE	canonical	3	18	junction_2	8.16624148553054	103	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTATTTGTTTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	72964627	72958452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
60160	chr7	-	246	1	Antisense	novelGene_ENSMUSG00000030811.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTACAATCCAGTTCCCCC	7394	False	NA	NA	False	NA	NA	NA	127368647	127368401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_127368400_127368600
60161	chr7	-	2027	5	Antisense	novelGene_ENSMUSG00000030811.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCACGGTTCTCCTTCTCG	7893	False	NA	NA	False	NA	NA	NA	127368148	127351437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_127351691_127360420_127360586_127361609_127361772_127366614_127366833_127366919
60162	SIRV6	+	991	7	NNC	SIRV6A	novel	1088	9	NA	NA	4	0	intron_retention	FALSE	canonical	0	0	junction_4	11447.3508107043	2	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1141	11331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2648_10691_10819_11031
60165	chr4	-	1048	3	ISM	ENSMUSG00000040964.17	ENSMUST00000147426.2	804	7	933	3097	933	2342	internal_fragment	FALSE	canonical	3	172	junction_2	17	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCTATGGGTTCCGAGTT	NA	False	NA	NA	False	NA	NA	NA	140308180	140305833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_140306759_140307699_140307778_140308135
60166	chr17	+	1608	9	FSM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	88	4	0	-4	multi-exon	FALSE	canonical	3	393	junction_1	74.6521098161331	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTATATGTTTACATT	NA	False	NA	NA	False	NA	NA	NA	26471957	26499689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
60167	chr11	+	1484	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	110	0	-44	0	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	236	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGCCTACTTGGAATTT	NA	False	NA	NA	False	NA	NA	NA	54793707	54801203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
60168	chr7	+	1699	7	ISM	ENSMUSG00000040734.15	ENSMUST00000047621.14	3130	13	10384	9	3102	-9	3prime_fragment	FALSE	canonical	3	44	junction_1	9.08600878029267	65	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTACCCAGAAATGAACATC	NA	False	NA	NA	False	NA	NA	NA	19105524	19112449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_19105572_19106848_19107310_19109174_19109307_19109409_19109544_19109649_19109817_19111412_19111613_19111891
60169	chr2	+	1263	5	FSM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	18	-85	-14	85	multi-exon	FALSE	canonical	3	137	junction_1	15.0996688705415	427	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATCCACAGTTGGA	4802	False	NA	NA	False	NA	NA	NA	19376464	19399872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_19376591_19382972_19383074_19388051_19388129_19398018_19398167_19399061
60171	chr8	-	1764	13	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.9444203108363	1	85	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAGCGATATTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	106578640	106571301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571617_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
60172	chr10	-	3742	10	Antisense	novelGene_ENSMUSG00000019966.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTGCGCCGCCAGCGC	NA	False	NA	NA	False	NA	NA	NA	99934563	99851685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_99851898_99887707_99887819_99899939_99900008_99912595_99912766_99915833_99915991_99916716_99916803_99923208_99923317_99924012_99924081_99925055_99925133_99931878
60173	chr17	-	1186	7	NNC	ENSMUSG00000024327.17	novel	2433	6	NA	NA	5	179	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	296.323818744892	1	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCAGCGTTGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	34250651	34247590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249224_34249349_34249396_34249539_34249636_34250554
60177	chr11	+	941	4	NNC	ENSMUSG00000017716.16	novel	947	4	NA	NA	-20	-6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	981.371262853949	6103	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGACTGTAAGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	117740124	117746552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117740336_117740579_117740690_117743488_117743607_117746050
60179	chr2	-	2594	3	Antisense	novelGene_ENSMUSG00000027115.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCAGACGTTTTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	109122119	109111110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_109111237_109118139_109118509_109120020
60181	chr19	-	2517	1	Antisense	novelGene_ENSMUSG00000024817.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCCCATTTCCTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	30037290	30034773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_30034800_30037300
60182	chr14	+	606	5	ISM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	109	3383	-43	18	5prime_fragment	FALSE	canonical	3	1593	junction_4	103.185512549001	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGCAAACAAACAGGATCT	1795	False	NA	NA	False	NA	NA	NA	26359337	26375030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991
60184	chr1	-	2215	20	NNC	ENSMUSG00000026594.15	novel	2947	20	NA	NA	-2	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	91.7955695706377	1	96	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTAATTTGCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	156767139	156636412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656548_156656659_156657950_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
60185	chr18	+	840	6	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	7976	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	405.07806655014	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	8827	False	NA	NA	False	NA	NA	NA	32994135	32999453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32994178_32994554_32994638_32996016_32996098_32996233_32996316_32997705_32997817_32999012
60186	chr14	+	978	3	ISM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	12069	8	691	-8	3prime_fragment	FALSE	canonical	3	316	junction_1	36.5	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGTATGACACTGATTT	NA	False	NA	NA	False	NA	NA	NA	29712362	29715168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_29712926_29713548_29713713_29714917
60187	chr12	-	1328	8	NIC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	-3	-31	combination_of_known_splicesites	FALSE	canonical	3	10	junction_5	110.016510820246	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAACTGACAAATGAATG	NA	False	NA	NA	False	NA	NA	NA	56392623	56375118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56387169_56387389_56389020_56389141_56392456
60188	chr10	+	1949	9	ISM	ENSMUSG00000020072.16	ENSMUST00000020262.5	2212	10	14611	4	14611	-4	3prime_fragment	FALSE	canonical	0	0	junction_1	3.70809924354783	50	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCTTTGAATTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	62874901	62894588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_62875012_62883246_62883347_62883720_62883820_62887979_62888090_62888207_62888238_62889642_62889732_62890105_62890285_62892557_62892621_62893419
60190	chr2	-	645	4	NNC	ENSMUSG00000027404.17	novel	1161	7	NA	NA	-29	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1711.14393186417	148	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTGATATATTCATTT	NA	False	NA	NA	False	NA	NA	NA	130021283	130013563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130013864_130014522_130014586_130018934_130019087_130021153
60191	chr7	+	1541	13	NNC	ENSMUSG00000030795.19	novel	5536	15	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	333.085439072653	14	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1180	False	NA	NA	False	NA	NA	NA	127566658	127581204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127580653_127580728_127580962
60192	chr11	-	1082	3	NIC	ENSMUSG00000032892.15	novel	967	4	NA	NA	8	-5	intron_retention	FALSE	canonical	3	589	junction_1	8	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTTTATGAAGAACATAAT	7244	False	NA	NA	False	NA	NA	NA	68864661	68863328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_68864100_68864266_68864384_68864467
60193	chr8	+	1411	7	NIC	ENSMUSG00000031570.18	novel	1483	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_5	25.803208241526	152	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	26210093	26214914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212498_26212628_26214106
60195	chr4	+	2171	6	FSM	ENSMUSG00000028911.17	ENSMUST00000053819.6	2257	6	86	0	86	0	multi-exon	FALSE	canonical	3	354	junction_1	33.990586932267	101	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACCGCGCTTGAATCTA	NA	False	NA	NA	False	NA	NA	NA	131601013	131629017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_131601182_131618517_131618661_131619391_131619505_131624967_131625183_131627372_131627463_131627575
60196	chr7	-	1130	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106983.8	1307	7	1465	16	-1	-16	3prime_fragment	FALSE	canonical	3	52	junction_5	108.542341968469	804	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTTATGAATTATTTG	2920	False	NA	NA	False	NA	NA	NA	101518530	101507553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517675_101518363
60199	chr12	-	2496	3	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	350	-857	intron_retention	FALSE	canonical	3	14	junction_2	49.5	1	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTAGGATTGTCAGCTGAA	NA	False	NA	NA	False	NA	NA	NA	73333133	73328111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_73329511_73331408_73332050_73332677
60200	chr1	-	1156	8	NNC	ENSMUSG00000073481.10	novel	1917	8	NA	NA	-3137	3	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_7	316.317587760356	258	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAATGCTACACCCGCT	NA	False	NA	NA	False	NA	NA	NA	184581785	184545885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184581589
60201	chr2	+	1468	5	NNC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	61	1	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	84.4019401435773	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCGCCCTTACCTTTCGA	7340	False	NA	NA	False	NA	NA	NA	125994121	126007197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_125994321_125996465_125996781_126000329_126000474_126001689_126001949_126006646
60202	chr9	+	2363	12	ISM	ENSMUSG00000053646.14	ENSMUST00000072093.13	8649	38	16871	988	5466	-988	3prime_fragment	FALSE	canonical	2	13	junction_3	3.41847194126603	13	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAGAATTGGGGAAGT	4277	False	NA	NA	False	NA	NA	NA	108941327	108947997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108941398_108941572_108941720_108942351_108942521_108942708_108942813_108942887_108942973_108943315_108943489_108943644_108943806_108943890_108944039_108944574_108944640_108944762_108944839_108945650_108945726_108946907
60203	chr8	-	1775	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	182	87	-29	1	multi-exon	FALSE	canonical	3	690	junction_2	21.3822356174466	2	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTGGTTTTCATGAAG	NA	False	NA	NA	False	NA	NA	NA	65186644	65171259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
60204	chr7	+	1394	2	FSM	ENSMUSG00000030543.11	ENSMUST00000107394.3	1944	2	539	11	539	-11	multi-exon	FALSE	canonical	3	17	junction_1	0	76	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAACAAAAACTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	79461013	79463176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79461508_79462276
60205	chr10	-	615	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-45	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8528	48	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGGTTGCCTCAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	75696119	75695189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75695403_75695516_75695694_75695894
60206	chr2	-	713	1	Genic_Genomic	ENSMUSG00000050700.12	novel	NA	NA	NA	NA	5666	498	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTAACTGTAGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	160748571	160747858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_160747900_160748600
60208	chr14	-	1222	6	NIC	ENSMUSG00000021773.12	novel	2314	7	NA	NA	-13	116	intron_retention	FALSE	canonical	3	244	junction_2	16.9870538940689	1368	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTACTCACTGAGTAGAGT	NA	False	NA	NA	False	NA	NA	NA	21898975	21897130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
60210	chr4	+	1667	12	FSM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	0	-69	0	69	multi-exon	FALSE	canonical	3	51	junction_4	6.78354840224641	288	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAAGTAAGGACTCAAGC	NA	False	NA	NA	False	NA	NA	NA	154226828	154241342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
60211	chr4	-	1763	5	NNC	ENSMUSG00000028232.14	novel	2690	8	NA	NA	4154	-9395	intron_retention	FALSE	canonical	0	0	junction_4	20.9806458432528	4	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGCTATCCCAAAAGTCC	4760	False	NA	NA	False	NA	NA	NA	3570373	3559722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3560693_3564092_3564258_3567280_3567475_3569363_3569753_3570328
60212	chr12	+	1263	1	ISM	ENSMUSG00000020594.15	ENSMUST00000111123.9	4984	21	76055	3	6713	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	78	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCCTATGAAAATATTT	7752	False	NA	NA	False	NA	NA	NA	8800188	8801451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_8800200_8801500
60213	chr1	+	754	2	Intergenic	novelGene_473	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	5	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGATGTTTGTTGGGGGT	532	False	NA	NA	False	NA	NA	NA	161705400	161709315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_161705610_161708770
60214	chr16	+	2108	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	26	13	11	-13	multi-exon	FALSE	canonical	3	351	junction_1	33.101170674162	194	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTGTCTAAATTGTTTG	NA	False	NA	NA	False	NA	NA	NA	58548298	58554601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
60215	chr3	+	1197	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	5	0	5	0	multi-exon	FALSE	canonical	3	201	junction_3	22.8965062837106	1286	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	104696208	104701775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
60217	chr3	+	1343	1	Intergenic	novelGene_3185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCCACCCCCATACACAT	NA	False	NA	NA	False	NA	NA	NA	123074133	123075476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_123074100_123075500
60218	chr5	+	3571	4	FSM	ENSMUSG00000034110.9	ENSMUST00000040616.9	4291	4	22	698	22	-698	multi-exon	FALSE	canonical	3	21	junction_2	1.88561808316413	22	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGAAGTAGTTTGGCCT	1877	False	NA	NA	False	NA	NA	NA	130173723	130183949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_130174068_130176894_130177065_130180511_130180691_130181071
60219	chr4	+	2743	11	NNC	ENSMUSG00000028550.16	novel	3178	11	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	21.5638586528478	1	144	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99082431	99148024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111114_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
60220	chr19	-	3027	1	ISM	ENSMUSG00000052942.14	ENSMUST00000162022.8	7514	11	418174	26	22003	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	20	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTAAAGCTTTTATACAT	NA	False	NA	NA	False	NA	NA	NA	28239303	28236276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_28236300_28239300
60221	chr12	-	2124	1	NIC	ENSMUSG00000056458.17	novel	1132	7	NA	NA	31003	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	110776358	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110774200_110776400
60222	chr19	+	2045	10	NNC	ENSMUSG00000024921.18	novel	876	7	NA	NA	55	-1	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	11.2095638179036	42	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAATGTGGTGTTGGTAC	NA	False	NA	NA	False	NA	NA	NA	26693338	26755672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_26693393_26693514_26693593_26698128_26698348_26729223_26729442_26737277_26737332_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
60223	chrUn_JH584304v1	-	1781	8	Intergenic	novelGene_4630	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	323.619580144745	1	103	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTACTTCGAGAGAATG	NA	False	NA	NA	False	NA	NA	NA	59650	52211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52368_53602_53833_54318_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
60224	chr8	-	1926	7	ISM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	509	2	307	0	intron_retention	FALSE	canonical	0	0	junction_5	38.4476556141232	100	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGGCCGTCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	71291855	71287774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622
60225	chr7	-	1452	13	FSM	ENSMUSG00000025480.6	ENSMUST00000026553.6	1460	13	6	2	6	-2	multi-exon	FALSE	canonical	3	141	junction_11	16.7779617355625	444	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGTCTATATTGTGTG	NA	False	NA	NA	False	NA	NA	NA	140367759	140357143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367648
60226	chr7	-	1000	4	FSM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	238	0	-1	0	multi-exon	FALSE	canonical	3	9878	junction_1	292.246851518066	1237	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTATGCCTGAAGTGTC	NA	False	NA	NA	False	NA	NA	NA	4815351	4811012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815161
60227	chr17	+	2160	11	NIC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1648	2	combination_of_known_splicesites	FALSE	canonical	3	8	junction_8	18.5590948055125	2	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTCGCACCCCGAGGTAA	NA	False	NA	NA	False	NA	NA	NA	57184150	57195906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57192083_57192224_57193440_57193688_57195636
60228	chr4	+	1253	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	71	12	-4	-12	multi-exon	FALSE	canonical	3	345	junction_3	21.2882009573378	14	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGCCCAATCCTGTCC	7696	False	NA	NA	False	NA	NA	NA	126156188	126169664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
60229	chr3	+	3369	11	NNC	ENSMUSG00000040322.11	novel	3431	10	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	4.20119030752	15	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGGCTTGTTTTCTAA	4494	False	NA	NA	False	NA	NA	NA	109030483	109075768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_109030704_109043527_109043655_109056798_109056887_109062309_109062422_109064162_109064322_109065813_109065961_109066663_109066772_109068532_109068701_109070734_109070886_109073641_109074227_109074264
60230	chr14	+	812	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-181	699	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATATTTTACAGTG	NA	False	NA	NA	False	NA	NA	NA	13669256	13670472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669565_13669968
60231	chr5	+	1289	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	63	0	23	0	multi-exon	FALSE	canonical	3	60	junction_5	7.48331477354788	220	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	31107472	31112435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
60233	chr7	+	1860	7	FSM	ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	48	585	-1	-585	multi-exon	FALSE	canonical	3	323	junction_5	18.6100331362771	22	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCAGTACCATAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	87927340	87959511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_87927583_87930594_87930741_87946290_87946458_87948652_87948806_87951392_87951509_87957220_87957353_87958607
60235	chr4	-	759	1	ISM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	16030	2	15983	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTGTTGTTGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	144119004	144118245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_144118200_144119000
60236	chr4	+	717	5	NNC	ENSMUSG00000028837.9	novel	708	5	NA	NA	-12	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1525.9428233063	31	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATCTTTCTGGGTTTGGC	5417	False	NA	NA	False	NA	NA	NA	126571459	126603503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126599969_126603277
60237	chr7	+	746	2	Genic_Genomic	ENSMUSG00000107470.3	novel	795	1	NA	NA	-13	78	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAGATTAAAATT	NA	False	NA	NA	False	NA	NA	NA	3230828	3231714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_3231065_3231204
60238	chr7	-	1397	1	Antisense	novelGene_ENSMUSG00000040952.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAACCCAGCATCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	24590610	24589213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_24589200_24590600
60239	chr2	-	2916	1	FSM	ENSMUSG00000065484.3	ENSMUST00000083550.3	64	1	63	-2915	63	2915	mono-exon	FALSE	NA	NA	NA	NA	NA	32	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCACTCCATCTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	84571459	84568543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84568500_84571500
60242	chr12	+	1060	7	NNC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	-75	-326	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	718.071588043668	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCTGCTCACACTTTTG	NA	False	NA	NA	False	NA	NA	NA	80993074	80996945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996730
60243	chr9	+	1236	3	FSM	ENSMUSG00000032417.11	ENSMUST00000185566.7	1054	3	-16	-166	-16	0	multi-exon	FALSE	canonical	3	38	junction_1	7	296	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTGTCTCAAGTCCAA	NA	False	NA	NA	False	NA	NA	NA	86454027	86456952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_86454111_86454889_86455117_86456026
60244	chr13	+	1522	7	NIC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	0	-3	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	18.830383249773	41	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCTGCTGTGATA	NA	False	NA	NA	False	NA	NA	NA	65426665	65452031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_65426913_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65451631
60245	chrX	-	578	5	NNC	ENSMUSG00000067567.13	novel	591	3	NA	NA	0	4148	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29.8998327754521	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGAAGTGCTGGGATTAG	NA	False	NA	NA	False	NA	NA	NA	101548752	101537613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101537673_101541736_101541879_101543427_101543559_101548004_101548058_101548559
60246	chrX	-	1469	1	Intergenic	novelGene_3998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTGTACTCACATATAAT	NA	False	NA	NA	False	NA	NA	NA	101537258	101535789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_101535800_101537300
60247	chr8	-	292	1	NIC	ENSMUSG00000038000.11	novel	2722	12	NA	NA	1350	-22	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAAATAATTTCATGCG	NA	False	NA	NA	False	NA	NA	NA	106425103	106424811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106424800_106425100
60249	chr2	-	2032	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	37	-6	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	19.790149064623	111	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATTGCAATGCCTAAG	NA	False	NA	NA	False	NA	NA	NA	59712854	59682713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
60250	chr9	+	2416	17	NNC	ENSMUSG00000032591.16	novel	2262	18	NA	NA	-12	-23	intron_retention	FALSE	non_canonical	0	0	junction_15	11.4316925146717	2	64	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATAAAGCGGCCTTTTC	6651	False	NA	NA	False	NA	NA	NA	107957622	107962171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961677_107961832_107961972
60251	chr6	-	1205	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5444	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	59.3915818950801	186	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGACTTTGCTTTGCTTG	2728	False	NA	NA	False	NA	NA	NA	83675081	83669779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672606_83672689_83672843_83673961_83674051_83674952
60253	chr1	+	870	1	ISM	ENSMUSG00000026017.14	ENSMUST00000187978.7	5463	15	45533	2207	9429	714	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAATGTAACTGTCCTG	8449	False	NA	NA	False	NA	NA	NA	60190035	60190905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_60190000_60190900
60254	chr1	+	1826	1	ISM	ENSMUSG00000026017.14	ENSMUST00000187978.7	5463	15	46756	28	10652	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	7	38	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTAAAAAATTCTGTTT	9672	False	NA	NA	False	NA	NA	NA	60191258	60193084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_60191300_60193100
60255	chr12	+	3602	25	NIC	ENSMUSG00000021090.17	novel	2520	16	NA	NA	131	-3	combination_of_known_junctions	TRUE	canonical	1	1	junction_18	3.4990077958695	27	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTAAGGTGTCGAAATT	NA	False	NA	NA	False	NA	NA	NA	72489153	72544010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_72489245_72496093_72496175_72496421_72496641_72497450_72497592_72497998_72498063_72498736_72498808_72500818_72501002_72502756_72502913_72506606_72506789_72507564_72507697_72510098_72510276_72510606_72510725_72513631_72513765_72515942_72516066_72516996_72517101_72520570_72520784_72522816_72522937_72523976_72524169_72525429_72525556_72528201_72528337_72529667_72529846_72532944_72533166_72533768_72533892_72542338_72542470_72543822
60256	chr8	+	1690	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	25	1351	25	0	multi-exon	FALSE	canonical	3	114	junction_5	16.7624458787116	201	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACCCTACAGTACTTG	8887	False	NA	NA	False	NA	NA	NA	123202906	123208480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
60257	chr19	+	2177	16	NNC	ENSMUSG00000032946.17	novel	2219	17	NA	NA	-48	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	89.2699775338209	606	44	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATAATTAACCTGGATCAT	NA	False	NA	NA	False	NA	NA	NA	6451676	6465227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461_6453592_6454329_6454481_6454683_6454858_6454967_6455085_6457070_6457353_6458200_6458279_6458477_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
60259	chr17	+	1341	5	ISM	ENSMUSG00000023902.19	ENSMUST00000148062.8	2271	7	6117	652	-511	469	3prime_fragment	FALSE	canonical	3	46	junction_4	96.4245171105357	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCAAAATTCCCAGCTGA	1480	False	NA	NA	False	NA	NA	NA	23825952	23829144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
60262	chr4	+	2827	5	FSM	ENSMUSG00000054679.9	ENSMUST00000108159.2	829	5	51	-2049	51	2	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTGATGTGCTGTCCTG	24	True	NA	NA	False	NA	NA	NA	33209313	33233342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_33209371_33223567_33223673_33225764_33225869_33226027_33226170_33230923
60263	chr14	-	1636	5	NIC	ENSMUSG00000006289.15	novel	1812	9	NA	NA	-741	-23	intron_retention	FALSE	canonical	3	624	junction_3	17.3565549577098	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAATTTGGTTTTGTATG	NA	False	NA	NA	False	NA	NA	NA	51155572	51153165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_51153356_51153608_51153708_51153798_51154162_51154256_51154961_51155292
60264	chr15	-	1530	5	ISM	ENSMUSG00000022420.17	ENSMUST00000162713.9	1357	7	2514	-684	9	0	3prime_fragment	FALSE	canonical	3	63	junction_3	39.8591269347436	220	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	252	False	NA	NA	False	NA	NA	NA	79658659	79645653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79646727_79647710_79647795_79649016_79649223_79649987_79650055_79658559
60265	chr7	+	1575	8	FSM	ENSMUSG00000003184.16	ENSMUST00000003284.16	2031	8	-2	458	-2	0	multi-exon	TRUE	canonical	3	81	junction_5	29.0601066054199	191	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	NA	False	NA	NA	NA	44647069	44651814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
60266	chr19	-	1209	9	NIC	ENSMUSG00000024725.14	novel	2726	10	NA	NA	4	-12	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	362.602550149609	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTATCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	18609183	18558184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18571219_18571284_18573714_18573766_18581529_18581577_18608983
60267	chr10	-	1102	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	33	0	-4	0	multi-exon	FALSE	canonical	3	38	junction_2	41.5	138	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	NA	False	NA	NA	NA	61946796	61943988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_61944903_61945662_61945792_61946737
60268	chr13	+	3181	8	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2784	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	101.377653215236	1	173	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTGGGAGTGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	35922511	36058043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35922617_35974083_35974159_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
60270	chr3	+	937	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	41	9	-16	-9	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	2912	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCCAAGCTTACAAATGGT	NA	False	NA	NA	False	NA	NA	NA	10077648	10081658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
60272	chr7	+	3309	14	NIC	ENSMUSG00000013921.16	novel	3300	14	NA	NA	-32	-12	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.87221936881638	22	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTATGGCCTTCTTGTG	7138	False	NA	NA	False	NA	NA	NA	29991120	30007780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29991268_29991602_29991792_29996272_29996413_29996497_29996592_29996779_29996942_29997344_29997464_29998236_29998474_30001270_30001407_30001560_30001690_30002794_30002939_30003032_30003157_30003336_30003402_30005183_30005257_30006230
60274	chr17	-	2227	1	Intergenic	novelGene_162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTCCTTTTTACCATAA	NA	False	NA	NA	False	NA	NA	NA	37371450	37369223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_37369200_37371400
60275	chr18	-	2692	1	Intergenic	novelGene_4555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGATGATCCTGTTCATT	NA	False	NA	NA	False	NA	NA	NA	64229951	64227259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_64227300_64230000
60278	chr3	-	1715	14	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	5643	16635	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	94	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTCCAACGCCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	32781119	32762910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32763014_32766024_32766089_32766249_32766424_32768664_32768766_32769566_32769668_32772187_32772272_32772515_32772623_32772715_32772804_32774047_32774112_32774334_32774448_32774581_32774665_32776768_32776865_32779395_32779482_32780668
60279	chr1	+	2352	1	Intergenic	novelGene_475	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAACTAGGACTCTGAGT	8086	False	NA	NA	False	NA	NA	NA	164286200	164288552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_164286200_164288600
60280	chr11	-	2574	7	Antisense	novelGene_ENSMUSG00000003948.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGGGGTCGGTCAGCACA	NA	False	NA	NA	False	NA	NA	NA	90169397	90140388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_90140560_90148343_90148428_90150652_90150812_90155326_90155403_90156869_90156971_90158335_90158408_90167486
60281	chr11	-	836	1	NIC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	1782	-3235	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTTTAAAAAAAATTACCTG	NA	False	NA	NA	False	NA	NA	NA	77969427	77968591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_77968600_77969400
60283	chr13	-	1142	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	0	2	0	-2	multi-exon	FALSE	canonical	3	162	junction_6	22.1387092889263	1297	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATAGTGCTTTGTACAG	NA	False	NA	NA	False	NA	NA	NA	49806261	49617500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
60284	chr15	-	1338	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72605	-628	8386	628	3prime_fragment	FALSE	canonical	3	216	junction_1	0	595	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTACCGATGGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	39648261	39645464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_39646506_39647964
60285	chr13	+	607	2	Intergenic	novelGene_1536	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	86	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGTTTAAATGTGAATAA	287	False	NA	NA	False	NA	NA	NA	111686611	111688393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_111686713_111687887
60286	chr5	-	3499	1	ISM	ENSMUSG00000040537.18	ENSMUST00000088761.11	9077	31	292132	0	14390	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCTCTCTTTCATGT	NA	False	NA	NA	False	NA	NA	NA	8125850	8122351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_8122400_8125800
60287	chr3	-	1648	2	NIC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	239	0	intron_retention	FALSE	canonical	3	230	junction_1	0	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	75562799	75554752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_75556298_75562696
60288	chr9	+	3027	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	16	49	8	-49	multi-exon	FALSE	canonical	3	208	junction_1	0	474	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAGCAAAAGAATCGTGT	203	False	NA	NA	False	NA	NA	NA	108337741	108343088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108337817_108340136
60289	chr17	+	881	5	NIC	ENSMUSG00000015575.16	novel	823	4	NA	NA	3	0	combination_of_known_junctions	TRUE	canonical	3	20	junction_3	660.503737688138	4744	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	26895388	26918621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26895553_26901651_26901700_26913452_26913556_26914328_26914459_26918185
60290	chr18	-	2579	4	Antisense	novelGene_ENSMUSG00000097755.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTACAAGGAAGGATGTG	NA	False	NA	NA	False	NA	NA	NA	34891709	34884805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_34885189_34887536_34889204_34889341_34889444_34891282
60291	chr19	+	1221	3	ISM	ENSMUSG00000038274.14	ENSMUST00000178310.9	613	5	107	5	0	-2	intron_retention	FALSE	canonical	3	11442	junction_1	1722.5	23	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGACTTCTTATGTTTTCT	1089	False	NA	NA	False	NA	NA	NA	6107980	6109544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6108032_6108272_6108356_6108457
60292	chr11	+	1563	11	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	181	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	308.74934817745	1	78	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTGGATGTAAACCAAGC	1411	False	NA	NA	False	NA	NA	NA	101010944	101017227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011819_101013498_101013568_101014239_101014320_101014738_101014874_101015085_101015146_101015248_101015399_101015795_101015934_101016028_101016191_101016857
60293	chrX	-	2977	20	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	14	-9	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_19	16.3524206785987	91	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGAACATTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	134985977	134972856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981866_134985845
60295	SIRV6	+	959	7	NNC	SIRV6A	novel	1088	9	NA	NA	340	0	intron_retention	FALSE	non_canonical	0	0	junction_2	7547.43397895382	1	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1643	11331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1736_1845_2027_2474_2621_2740_2829_3106_3165_10724_10819_11031
60296	chr15	-	850	8	NNC	ENSMUSG00000055762.17	novel	2152	10	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1388.2574894964	20	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	75781132	75767338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75767441_75767580_75767702_75768080_75768281_75768497_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
60297	chr7	+	1241	11	NIC	ENSMUSG00000030714.15	novel	1312	10	NA	NA	4	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	179.607043291737	1225	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCATGTCTCCTGGGCC	118	False	NA	NA	False	NA	NA	NA	126248487	126271947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126248650_126260223_126260321_126261737_126261824_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
60298	chr17	+	1197	8	FSM	ENSMUSG00000052712.18	ENSMUST00000234711.2	13859	8	122	12540	-1	0	multi-exon	FALSE	canonical	3	31	junction_1	113.402479906656	81	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	470	False	NA	NA	False	NA	NA	NA	29487920	29520499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29487977_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
60299	chr7	-	2346	7	NNC	ENSMUSG00000038930.12	novel	2237	7	NA	NA	0	249	intron_retention	TRUE	non_canonical	0	0	junction_1	19.94993734326	31	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTTGAAACTTCTAAAT	NA	False	NA	NA	False	NA	NA	NA	79973901	79966094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79966287_79966437_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79970930_79973492
60300	chr3	-	1324	5	FSM	ENSMUSG00000028266.18	ENSMUST00000120539.8	1669	5	334	11	294	-11	multi-exon	FALSE	canonical	3	21	junction_4	8.32165848854662	52	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCAACAGAGTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	143910647	143894301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573_143907813_143910580
60302	chr13	-	2617	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109923.9	2940	14	29	294	-16	221	multi-exon	FALSE	canonical	3	54	junction_13	5.80246835866034	67	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTGGGACCCTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	55635895	55621535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_55622107_55622268_55622372_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
60303	chr17	-	1460	1	NIC	ENSMUSG00000002625.11	novel	3513	13	NA	NA	163	-1123	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCAGACAAAGCTGACC	NA	False	NA	NA	False	NA	NA	NA	32554390	32552930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32552900_32554400
60305	chr8	-	1593	5	NNC	ENSMUSG00000031487.6	novel	1899	4	NA	NA	8	379	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	46.267564232408	225	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTCTTGGCTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	27618674	27613853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_27614649_27615477_27615668_27615847_27616170_27617487_27617548_27618448
60307	chr15	+	1438	13	NNC	ENSMUSG00000056851.15	novel	1086	14	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	190.215867868296	2	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAGATGGACTGGAG	4751	False	NA	NA	False	NA	NA	NA	102381715	102407305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387189_102391601_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396657_102396713_102398189_102398243_102399068_102399239_102406923
60309	chrX	-	2859	1	Genic_Genomic	ENSMUSG00000031433.16	novel	NA	NA	NA	NA	49693	1842	mono-exon	FALSE	NA	NA	NA	NA	NA	32	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGATTTGGAAAGAGATT	NA	False	NA	NA	False	NA	NA	NA	138845138	138842279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_138842300_138845100
60310	chr12	+	854	7	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	29	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1146.26762678801	81	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTTACAATCTATG	NA	False	NA	NA	False	NA	NA	NA	87313512	87320754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319412_87320630
60312	chr13	+	2212	5	NNC	ENSMUSG00000025870.11	novel	1046	4	NA	NA	18	1628	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	32.9876870968548	5	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTCTCCTGAAGTGA	2724	False	NA	NA	False	NA	NA	NA	54722877	54730569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533_54729311_54729722
60313	chrX	-	747	2	Genic_Genomic	ENSMUSG00000080241.4	novel	451	1	NA	NA	-97	281	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAAGGAAACTATC	NA	False	NA	NA	False	NA	NA	NA	36807847	36807018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_36807356_36807437
60314	chr19	-	1215	4	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	38	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	596.382613950325	16	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCCGCTGCCTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	7183643	7175581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176559_7181422_7181522_7181754_7181817_7183566
60315	chr12	+	2595	14	NIC	ENSMUSG00000021066.10	novel	5150	15	NA	NA	168	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	5.77179430224741	20	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATGCTCACTGGCTCTA	9142	False	NA	NA	False	NA	NA	NA	69940046	70010803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_69940119_69954578_69954767_69972715_69972964_69978311_69978447_69978990_69979096_69981643_69981695_69983848_69983906_69992986_69993080_69994220_69994360_70000213_70000342_70001229_70001287_70002089_70002162_70005814_70006263_70010001
60317	chr4	-	918	8	NNC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	-28	3	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_6	368.210509887804	9	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTTCTTTTTTTTTTT	5933	False	NA	NA	False	NA	NA	NA	139079650	139074752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139076970_139077746_139077806_139079579
60318	chr3	-	1738	7	ISM	ENSMUSG00000028163.18	ENSMUST00000129428.8	2520	13	14032	-215	-10	-10	3prime_fragment	FALSE	canonical	3	48	junction_1	5.39804491356722	89	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGACCTAATCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	135300212	135290427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969
60319	chr17	-	1114	1	Intergenic	novelGene_114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAATTATTTTTTTTG	2247	False	NA	NA	False	NA	NA	NA	29005866	29004752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_29004800_29005900
60320	chr8	+	838	7	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	633.249928718687	37	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	75836217	75854316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840858_75854179
60321	chr6	-	1995	11	NNC	ENSMUSG00000005362.15	novel	2084	11	NA	NA	0	-23	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	68.1953810752605	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAAATGCAACTCAAGA	NA	False	NA	NA	False	NA	NA	NA	106777038	106757184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767861_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
60322	chr9	-	1144	4	FSM	ENSMUSG00000037190.13	ENSMUST00000195235.6	1162	4	39	-21	-27	21	multi-exon	FALSE	canonical	3	104	junction_2	4.08248290463863	397	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGAGGATGGTTCTTGC	NA	False	NA	NA	False	NA	NA	NA	107419353	107416752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107417585_107418201_107418240_107418695_107418850_107419233
60323	chr8	-	1578	10	NNC	ENSMUSG00000015994.11	novel	1930	9	NA	NA	66	149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	325.997614169865	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATTCCATAGTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	26505612	26488998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408_26505518_26505554
60324	chr4	-	2228	11	FSM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	-14	4	-4	-2	multi-exon	FALSE	canonical	3	24	junction_10	11.2782977438973	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTTCAGTGTCTGTTCC	8665	False	NA	NA	False	NA	NA	NA	152112132	152104234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
60325	chr7	+	892	1	ISM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	125593	51	25620	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTTCCTGTTATTGTG	NA	False	NA	NA	False	NA	NA	NA	101438432	101439324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_101438400_101439300
60326	chr7	+	1940	9	NNC	ENSMUSG00000110234.3	novel	1972	9	NA	NA	-17	6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	160.611332103311	9	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCACTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	105289741	105308255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_105289830_105289968_105290065_105290234_105290368_105300278_105300479_105300708_105301514_105304828_105304991_105306093_105306298_105306380_105306492_105308114
60327	chr4	+	1464	11	NNC	ENSMUSG00000074088.7	novel	1584	10	NA	NA	24	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	344.9826807247	9	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCTTTTTACAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	130253948	130283809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130254018_130254103_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
60328	chrX	-	877	4	NIC	ENSMUSG00000006423.16	novel	1145	7	NA	NA	2591	8961	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	89.8480198260744	173	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTGAGGTAAGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	36118074	36078428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_36078984_36116291_36116385_36116982_36117073_36117935
60331	chr17	+	634	3	NNC	ENSMUSG00000044533.16	novel	1094	5	NA	NA	-1	-71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4734.5	5	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGCCGGTATAGATGAC	6399	False	NA	NA	False	NA	NA	NA	24939245	24940210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24939414_24939507_24939706_24939942
60332	chr5	-	613	1	Intergenic	novelGene_840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCAAGTCAGGGTTGAGG	NA	False	NA	NA	False	NA	NA	NA	116546235	116545622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_116545600_116546200
60334	chr10	+	766	8	NNC	ENSMUSG00000025351.15	novel	1063	8	NA	NA	-27	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1411.33936965088	6	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAAAAAAGGAGATGGTCT	550	False	NA	NA	False	NA	NA	NA	128745763	128748682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747899_128748094_128748171_128748306_128748391_128748543
60335	chr17	+	1433	12	ISM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	314	27	182	-27	3prime_fragment	FALSE	canonical	3	800	junction_1	72.3614663904886	298	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAATACTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	56316514	56323763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
60336	chr2	+	2289	6	ISM	ENSMUSG00000016386.16	ENSMUST00000125023.2	1054	7	3434	-1319	3434	-6	3prime_fragment	FALSE	canonical	3	17	junction_1	4.06939798987516	19	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAATCGGTGCTGCGTGG	NA	False	NA	NA	False	NA	NA	NA	106529632	106698695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_106529881_106575044_106575227_106613977_106614204_106691832_106691949_106694999_106695114_106697292
60339	chr6	-	1034	6	NNC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-14	-1	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_5	539.261569185122	6875	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTTTTTCAGACCTGA	NA	False	NA	NA	False	NA	NA	NA	124689118	124681345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688813
60340	chr14	-	2336	1	Intergenic	novelGene_512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATAGTATTGGGCATTT	NA	False	NA	NA	False	NA	NA	NA	10230058	10227722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_10227700_10230100
60341	chr11	-	1508	10	FSM	ENSMUSG00000001123.16	ENSMUST00000108268.10	1520	10	8	4	8	1	multi-exon	FALSE	canonical	3	15	junction_9	3.82970843102535	71	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGAGATGGCTGGCT	NA	False	NA	NA	False	NA	NA	NA	78875764	78853803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78862142_78862254_78863813_78864016_78867438_78867528_78875603
60342	chr4	-	3190	4	Antisense	novelGene_ENSMUSG00000001089.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAATGAGGGGCGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	136270575	136197074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_136197157_136248647_136248754_136266434_136266526_136267664
60343	chr19	-	3025	6	ISM	ENSMUSG00000025017.11	ENSMUST00000059672.9	4482	17	88182	0	88182	0	3prime_fragment	FALSE	canonical	2	5	junction_4	1.6	15	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAGTAAACAAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	41285353	41260815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_41262793_41270309_41270447_41271518_41271590_41275908_41276065_41281191_41281265_41284742
60344	chr18	-	1927	9	FSM	ENSMUSG00000002475.17	ENSMUST00000117828.9	1962	9	35	0	-23	0	multi-exon	FALSE	canonical	2	2	junction_1	3.63145976158349	39	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTTTGTGAGTTTT	-2	True	NA	NA	False	NA	NA	NA	10706736	10644410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_10645236_10647725_10647892_10647969_10648019_10652187_10652362_10658779_10658893_10682068_10682115_10704547_10704731_10706000_10706165_10706529
60346	chr9	+	1909	1	ISM	ENSMUSG00000032411.16	ENSMUST00000034982.16	7354	13	125432	2	11170	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	31	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTGGTGTCATAATTGG	7468	False	NA	NA	False	NA	NA	NA	96203788	96205697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_96203800_96205700
60347	chrM	-	625	1	Intergenic	novelGene_4283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGTATATATATTGATTTA	0	True	NA	-246	True	NA	NA	NA	16188	15563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrM_-_15600_16200
60349	chrX	-	602	1	Intergenic	novelGene_3933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGGCTTTAGGCAAGCAC	NA	False	NA	NA	False	NA	NA	NA	56426035	56425433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_56425400_56426000
60350	chrX	-	559	1	Intergenic	novelGene_3932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAACCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56424359	56423800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_56423800_56424400
60352	chr11	+	966	2	NNC	ENSMUSG00000037791.16	novel	576	3	NA	NA	1099	-21	intron_retention	TRUE	non_canonical	0	0	junction_1	0	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGCTGGCTTCTGGAGGG	NA	False	NA	NA	False	NA	NA	NA	77915643	77916821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_77916006_77916217
60353	chr7	-	881	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	-87	5	-87	-5	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	1492	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGTCTGCAACATTAAAA	1558	False	NA	NA	False	NA	NA	NA	90106524	90099912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
60354	chr8	-	1023	6	NIC	ENSMUSG00000031819.14	novel	1863	7	NA	NA	6	-1	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	594.120324513478	1538	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCCTTTTGTAATCCTGA	NA	False	NA	NA	False	NA	NA	NA	121394820	121384590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121384988_121385266_121385362_121385743_121385814_121386697_121386757_121387522_121387600_121394495
60355	chr11	+	2737	2	NNC	ENSMUSG00000078970.6	novel	2002	8	NA	NA	12	-18108	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	2	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGCTCCAAACCCTATG	2483	False	NA	NA	False	NA	NA	NA	17161929	17164806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_17164584_17164723
60356	chr17	-	636	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	-3	-1	0	0	multi-exon	FALSE	canonical	3	20050	junction_3	1274.65978031613	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	34174637	34170972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34171093_34171194_34171566_34174051_34174151_34174591
60357	chr9	-	2445	2	ISM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	27250	409	6389	-409	3prime_fragment	FALSE	canonical	3	777	junction_1	0	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGGATCTGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	96219245	96215116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_96215748_96217431
60358	chr7	+	1905	9	ISM	ENSMUSG00000055116.9	ENSMUST00000211770.2	2464	20	60630	-282	-10167	-4	3prime_fragment	FALSE	canonical	3	70	junction_1	14.6287388383278	96	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGTACTGTTCCCAATTG	NA	False	NA	NA	False	NA	NA	NA	112894459	112913329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
60359	chr9	-	636	2	ISM	ENSMUSG00000076138.3_ENSMUSG00000037742.15	ENSMUST00000129380.2	845	3	529	-231	314	-4	3prime_fragment	FALSE	canonical	3	15409	junction_1	0	1	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	9637	False	NA	NA	False	NA	NA	NA	78386469	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239
60360	chr5	-	1604	11	ISM	ENSMUSG00000036555.15	ENSMUST00000041783.14	6037	23	102	23497	0	-1514	5prime_fragment	FALSE	canonical	3	19	junction_4	6.58862656401165	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATAACACAGGCCTCTG	4513	False	NA	NA	False	NA	NA	NA	140688031	140671078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_140671850_140672082_140672156_140673539_140673611_140675567_140675619_140675710_140675825_140677354_140677426_140678548_140678684_140679169_140679299_140682762_140682809_140685439_140685488_140687936
60361	chr10	+	3342	4	NNC	ENSMUSG00000096977.3	novel	380	2	NA	NA	-20	16040	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	34	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATCCTCATGTGTTTCT	5323	False	NA	NA	False	NA	NA	NA	18111093	18137807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_18111279_18131857_18132068_18133293_18134841_18136407
60362	chr17	+	2746	5	ISM	ENSMUSG00000056492.7	ENSMUST00000225962.2	4868	15	22956	185	19336	-185	3prime_fragment	FALSE	canonical	1	1	junction_2	1.6393596310755	2	71	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTATGGTCTGATTGGT	NA	False	NA	NA	False	NA	NA	NA	43760858	43767477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_43762087_43763170_43763213_43763306_43763367_43763961_43764047_43766146
60363	chr8	+	1585	8	FSM	ENSMUSG00000031782.16	ENSMUST00000159871.4	831	8	6	-760	4	-11	multi-exon	FALSE	canonical	2	4	junction_5	58.5585351662448	12	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAAACAATTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	95565036	95581512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95579742_95579899_95580232_95580287_95580741
60364	chr11	-	1307	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	-33	17	-33	-17	multi-exon	FALSE	canonical	3	28	junction_1	0	231	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAAATATAGACTTGTAT	NA	False	NA	NA	False	NA	NA	NA	60822726	60811759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60812732_60822391
60365	chr9	-	1262	5	NNC	ENSMUSG00000032475.16	novel	4476	4	NA	NA	13	-74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.9789732534175	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGACATTCTTGTAAA	NA	False	NA	NA	False	NA	NA	NA	100428162	100377129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_100377186_100377590_100377725_100379310_100380024_100390481_100390726_100428047
60366	chr19	-	1419	3	NNC	ENSMUSG00000024742.16	novel	2341	2	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416	119	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2195	False	NA	NA	False	NA	NA	NA	10181267	10176501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177352_10178108_10178462_10181051
60367	chr11	-	1306	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	-39	16	-15	-16	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	446	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTTGTACTCTTAAGTAT	NA	False	NA	NA	False	NA	NA	NA	66943435	66928882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
60368	chr13	+	1351	8	NNC	ENSMUSG00000025875.15	novel	718	7	NA	NA	363	-3	intron_retention	FALSE	canonical	1	1	junction_1	138.954991979124	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGGTGGTTTATGTTCA	NA	False	NA	NA	False	NA	NA	NA	54937820	54944585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54937896_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
60369	chr4	+	1727	8	NIC	ENSMUSG00000036073.19	novel	1859	10	NA	NA	-171	-23	intron_retention	FALSE	canonical	2	43	junction_2	98.2371142300348	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTAACCATGTTTTC	11	False	NA	NA	False	NA	NA	NA	41755586	41758672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41755653_41755960_41756131_41756343_41756423_41756512_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083
60370	chr5	-	1659	9	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	150	junction_8	32.0497659897853	203	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCGGCCTGGTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	110256024	110251845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255721
60371	chr1	-	1124	6	ISM	ENSMUSG00000026171.13	ENSMUST00000135140.8	1507	10	2976	4	201	1	3prime_fragment	FALSE	canonical	3	94	junction_3	6.6932802122726	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTATGTGGTATGAC	NA	False	NA	NA	False	NA	NA	NA	74637555	74632910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520
60372	chr9	-	1246	7	FSM	ENSMUSG00000032431.7	ENSMUST00000084881.5	1674	7	419	9	419	7	multi-exon	FALSE	canonical	3	526	junction_5	47.5280618862864	220	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTTCTTTGGTCTCTCCG	NA	False	NA	NA	False	NA	NA	NA	114219324	114204210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114204651_114207107_114207192_114208977_114209124_114210653_114210783_114213763_114213936_114215269_114215420_114219199
60373	chr5	+	1593	7	NNC	ENSMUSG00000029625.17	novel	1756	8	NA	NA	89	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	360.973991060606	7	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGTGTTTCATTACTT	NA	False	NA	NA	False	NA	NA	NA	145104166	145118849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145104270_145107324_145107376_145110116_145110277_145112883_145113015_145114039_145114113_145115567_145115739_145117945
60374	chr4	-	558	1	Intergenic	novelGene_2148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAATGAGGACACTAT	NA	False	NA	NA	False	NA	NA	NA	147609916	147609358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147609400_147609900
60375	chr4	-	1734	1	Intergenic	novelGene_2147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCTTATTTTTAGAATTC	NA	False	NA	NA	False	NA	NA	NA	147609104	147607370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147607400_147609100
60376	chr3	-	3167	2	FSM	ENSMUSG00000048109.11	ENSMUST00000061772.11	4343	2	629	547	57	-547	multi-exon	FALSE	canonical	3	61	junction_1	0	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAAATTGTTTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	107240360	107233283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107233621_107237530
60379	chr16	-	450	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	84	437	-3	-6	multi-exon	FALSE	canonical	3	6062	junction_1	348	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGAACAGTTTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	37474731	37467968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_37468082_37469375_37469523_37474541
60380	chrX	-	1148	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	102	0	11	0	multi-exon	FALSE	canonical	3	703	junction_2	29	3376	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135072989	135070829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135071799_135072384_135072455_135072880
60381	chr17	-	1761	7	NNC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	-3282	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	183.053422681892	3	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAAAAAGGGGGG	4749	False	NA	NA	False	NA	NA	NA	35375517	35368065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369551_35374643
60382	chr8	+	3853	15	FSM	ENSMUSG00000002190.14	ENSMUST00000002259.13	3902	15	21	28	10	-28	multi-exon	TRUE	canonical	3	7	junction_1	9.63756468519016	28	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCCTAATAAAAGATAAATA	NA	False	NA	NA	False	NA	NA	NA	84116516	84155153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84116607_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
60384	chr18	-	390	1	NIC	ENSMUSG00000036223.17	novel	2630	7	NA	NA	0	-10879	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGACCAGGCTGGCTTTG	6797	False	NA	NA	False	NA	NA	NA	74340818	74340428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_74340400_74340800
60385	chr10	+	1728	6	FSM	ENSMUSG00000113262.2	ENSMUST00000144647.8	1758	6	-2	32	-2	-32	multi-exon	FALSE	canonical	3	12	junction_5	364.148541120241	17	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATATAAATTAAAAGCCTAT	NA	False	NA	NA	False	NA	NA	NA	81220297	81227362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81226192_81226419_81226622
60386	chr10	-	1618	8	NNC	ENSMUSG00000034748.17	novel	1891	8	NA	NA	452	0	intron_retention	FALSE	canonical	2	5	junction_7	80.0400409998977	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	1818	False	NA	NA	False	NA	NA	NA	81462639	81457620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81462586
60387	chr17	+	1101	6	NIC	ENSMUSG00000002767.14	novel	1031	7	NA	NA	0	-8	intron_retention	FALSE	canonical	3	984	junction_3	77.0828126108538	105	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTTATCTCTTACTAC	NA	False	NA	NA	False	NA	NA	NA	46957168	46961049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46957325_46958315_46958485_46959162_46959514_46959584_46959696_46959960_46960035_46960809
60388	chrM	+	201	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	96	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	94	False	NA	-27	True	NA	NA	NA	14240	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14287_15132
60389	chr17	+	1533	4	NNC	ENSMUSG00000092417.4	novel	1518	3	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	41.0203201677738	466	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGTGGTTTGTTTACT	4629	False	NA	NA	False	NA	NA	NA	35340498	35343782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35340775_35341204_35341268_35342028_35342636_35343195
60390	chr5	-	1139	11	Antisense	novelGene_ENSMUSG00000029227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	31	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCGCATGCGCCGCAGG	NA	False	NA	NA	False	NA	NA	NA	74733200	74696157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_74696422_74697460_74697503_74697598_74697640_74701589_74701650_74702668_74702773_74706071_74706136_74706711_74706819_74707349_74707491_74717704_74717807_74731752_74731859_74733092
60391	chr3	+	1459	3	NNC	ENSMUSG00000063273.12	novel	7480	20	NA	NA	2350	1799	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	330	1	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTGAAAAACAGTTGTG	NA	False	NA	NA	False	NA	NA	NA	51378916	51381438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_51379004_51380020_51381012_51381057
60392	chr7	+	364	2	NNC	ENSMUSG00000030842.13	novel	1119	5	NA	NA	-511	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTGCTGGTTCAACC	NA	False	NA	NA	False	NA	NA	NA	101560512	101561092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101560858_101561073
60393	chr19	-	1392	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179553.2	942	3	-61	-389	56	0	multi-exon	FALSE	canonical	3	15	junction_2	89.5	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	568	False	NA	NA	False	NA	NA	NA	21630225	21574675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_21575699_21576118_21576233_21629970
60394	chr9	+	1739	2	ISM	ENSMUSG00000037129.8	ENSMUST00000034597.8	3245	13	26124	6	26124	-6	3prime_fragment	FALSE	canonical	3	10	junction_1	0	41	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAGAAGTTGTTGGGTG	NA	False	NA	NA	False	NA	NA	NA	45256521	45258873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_45256677_45257289
60395	chrX	+	1134	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	27	17	27	-17	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACTTGCATACACTACAG	NA	False	NA	NA	False	NA	NA	NA	138234458	138238901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
60396	chr16	-	1768	1	ISM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	102523	0	2921	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	75	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	21879526	21877758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_21877800_21879500
60397	chr7	+	532	6	NNC	ENSMUSG00000059070.17	novel	679	6	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3103.20137922114	20	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5955	False	NA	NA	False	NA	NA	NA	45367527	45370255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369827_45369912_45370137
60398	chr11	-	1655	6	FSM	ENSMUSG00000020773.12	ENSMUST00000106441.8	2192	6	537	0	537	0	multi-exon	FALSE	canonical	3	60	junction_4	39.5777715390849	211	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116000526	115996577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603_115998835_115999091_115999188_116000359
60400	chr2	+	2097	2	ISM	ENSMUSG00000027363.16	ENSMUST00000138859.2	3463	17	25	39292	-7	-39292	5prime_fragment	FALSE	canonical	3	389	junction_1	0	43	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCGAGTTTATCTGTTACA	3586	False	NA	NA	False	NA	NA	NA	126549272	126561876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_126549408_126559914
60401	chr9	-	2279	11	FSM	ENSMUSG00000023249.16	ENSMUST00000123555.8	2495	11	216	0	9	0	multi-exon	FALSE	canonical	0	0	junction_10	2.9	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCTGTCCGACTGAAT	NA	False	NA	NA	False	NA	NA	NA	106353359	106347825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351720_106351878_106352068_106352221_106352348_106352997_106353182_106353280
60402	chr14	+	2208	8	Antisense	novelGene_ENSMUSG00000022221.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAATGAGCGACTTCACAA	4539	False	NA	NA	False	NA	NA	NA	56022506	56026270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_56022808_56023317_56023376_56023481_56023826_56024050_56024108_56024213_56024620_56024740_56024899_56025282_56025590_56025693
60403	chr13	-	501	1	Antisense	novelGene_ENSMUSG00000021366.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTCGCTGAAGTGTACAAT	NA	False	NA	NA	False	NA	NA	NA	42338447	42337946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_42337900_42338400
60405	chr11	+	1699	5	Antisense	novelGene_ENSMUSG00000098613.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGGGCGGGACCGGAAG	3655	False	NA	NA	False	NA	NA	NA	102884926	102907995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102886009_102888181_102888275_102890476_102890674_102890975_102891182_102907874
60406	chr10	-	4773	31	Antisense	novelGene_ENSMUSG00000035722.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	177	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACCGGAAACAGCGGAGA	8482	False	NA	NA	False	NA	NA	NA	79845819	79833440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79833514_79833601_79833709_79833847_79833990_79834077_79834189_79834282_79834357_79834588_79834670_79835212_79835427_79835513_79835650_79836539_79836663_79836754_79836923_79837321_79837554_79837868_79838048_79838335_79838562_79838662_79838882_79838959_79839165_79839627_79839740_79840212_79840385_79840550_79840683_79840785_79840925_79841473_79841613_79841819_79842005_79842077_79842142_79842264_79842574_79842967_79843059_79843156_79843274_79843477_79843610_79843689_79843790_79843976_79844292_79844495_79844669_79844756_79844930_79845689
60407	chr19	-	1407	7	NNC	ENSMUSG00000055044.13	novel	2571	7	NA	NA	55	124	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	82.3989279865541	1366	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGACCTCTTAGTTGAC	NA	False	NA	NA	False	NA	NA	NA	40260005	40210682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40211173_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
60408	chr15	+	930	6	NNC	ENSMUSG00000059586.11	novel	1054	7	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	363.127746116983	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59246089	59473533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59464055_59464094_59473188
60409	chr11	+	744	6	ISM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	68	-10	40	10	3prime_fragment	FALSE	canonical	3	1268	junction_2	60.2229192251588	15	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAATTATTGAAGTGTAGT	1549	False	NA	NA	False	NA	NA	NA	58062554	58070401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
60411	chrX	-	1551	9	FSM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	63	-3	63	3	multi-exon	FALSE	canonical	0	0	junction_7	64.8072864344743	248	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCCCAGGTCTTCACTG	NA	False	NA	NA	False	NA	NA	NA	101898159	101891241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101897739_101897930_101898030
60412	chr11	+	2733	6	NNC	ENSMUSG00000078676.10	novel	3741	14	NA	NA	17823	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	116.743479475301	168	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGACTCTGTGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	98718809	98724626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98719496_98719685_98719785_98720039_98720255_98722113_98722237_98722368_98722439_98723086
60413	chr2	-	3055	1	FSM	ENSMUSG00000074671.7	ENSMUST00000099194.4	3072	1	13	4	13	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	19	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTTAGGTCATATTATT	NA	False	NA	NA	False	NA	NA	NA	153067348	153064293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_153064300_153067300
60414	chrX	-	1006	5	NIC	ENSMUSG00000046032.17	novel	1114	6	NA	NA	0	-8	combination_of_known_splicesites	FALSE	canonical	3	21	junction_4	161.237984048425	15	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTACATTTTTCTCAGC	NA	False	NA	NA	False	NA	NA	NA	100266155	100141399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100265867
60415	chr4	+	1745	13	NNC	ENSMUSG00000012126.17	novel	553	5	NA	NA	256	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.398624786146	201	6	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGACATAAGCTTCACAAGG	NA	False	NA	NA	False	NA	NA	NA	133835915	133854082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_133836292_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
60416	chr4	-	997	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9902	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	190.887983441133	441	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGACAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	101760888	101747229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760802
60417	chr6	-	1959	2	FSM	ENSMUSG00000012483.5	ENSMUST00000159594.2	682	2	5	-1282	5	-3	multi-exon	FALSE	canonical	3	1539	junction_1	0	25	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTGTTGGTCAATTGT	-10	True	NA	NA	False	NA	NA	NA	8259135	8255938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_8257762_8258999
60418	chrX	-	2406	2	NNC	ENSMUSG00000081133.3	novel	451	3	NA	NA	-101	190	intron_retention	TRUE	canonical	2	7	junction_1	0	27	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGAGGAGAAATCTCTT	NA	False	NA	NA	False	NA	NA	NA	37034580	37029502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37031443_37034114
60420	chr11	+	4333	19	FSM	ENSMUSG00000020901.14	ENSMUST00000021283.8	4370	19	37	0	-2	0	multi-exon	FALSE	canonical	0	0	junction_3	0.684934889218775	3	97	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGGTCATCTATAGTTA	NA	False	NA	NA	False	NA	NA	NA	68322983	68388675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68323089_68364620_68364737_68366228_68366330_68367130_68367200_68368269_68368409_68377376_68377447_68381297_68381473_68381614_68381769_68382772_68382857_68383077_68383778_68383901_68384065_68384367_68384494_68384980_68385110_68385287_68385382_68385607_68385685_68386000_68386095_68386173_68386257_68386733_68386847_68386934
60421	chr18	+	1458	6	ISM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	1625	14	1561	-14	3prime_fragment	FALSE	canonical	3	1216	junction_2	94.8168761350004	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAATTATTTAAACTCAAG	NA	False	NA	NA	False	NA	NA	NA	47093507	47221048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
60423	chr15	+	893	5	FSM	ENSMUSG00000001289.13	ENSMUST00000168805.8	827	5	-4	-62	-4	8	multi-exon	FALSE	canonical	3	835	junction_1	33.0709464636257	93	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGACCGCTGCGCAAA	382	False	NA	NA	False	NA	NA	NA	102234598	102239905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102234696_102234867_102235285_102236956_102237032_102237146_102237253_102239707
60424	chr4	-	1499	11	Fusion	ENSMUSG00000086606.2_ENSMUSG00000028975.17	novel	2006	9	NA	NA	4	3	multi-exon	FALSE	canonical	3	45	junction_1	151.923796687682	109	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTCGTTGTGGACAAAAC	NA	False	NA	NA	False	NA	NA	NA	149184281	149031945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_149032363_149033223_149033365_149046004_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
60428	chr1	-	3721	4	ISM	ENSMUSG00000025938.17	ENSMUST00000188454.7	8463	10	-62	70633	-62	38637	5prime_fragment	FALSE	canonical	2	5	junction_2	0.471404520791032	6	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAGTAAACAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	13062936	13007405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_13009425_13014203_13014337_13059803_13061188_13062751
60430	chr2	+	972	3	NNC	ENSMUSG00000074578.15	novel	659	4	NA	NA	1	-20	intron_retention	FALSE	non_canonical	0	0	junction_2	504	41	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTGACTAATGATATTTA	NA	False	NA	NA	False	NA	NA	NA	166905141	166907762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166905648_166907078_166907142_166907359
60431	chr4	-	2077	8	NIC	ENSMUSG00000028434.13	novel	3247	16	NA	NA	-6659	-12	combination_of_known_junctions	FALSE	canonical	2	11	junction_7	50.7398325996933	44	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTACTGCTAACAGTTTTT	22	False	NA	NA	False	NA	NA	NA	57077218	57061737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_57063280_57064798_57064864_57068304_57068339_57071051_57071083_57073261_57073372_57076290_57076461_57076533_57076604_57077163
60432	chr10	-	1329	4	FSM	ENSMUSG00000035478.15	ENSMUST00000142997.8	1118	4	-220	9	-64	-9	multi-exon	FALSE	canonical	3	1197	junction_3	65.3214274866134	242	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTGAACTCTGACTTGT	NA	False	NA	NA	False	NA	NA	NA	80231224	80228381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897
60433	chr5	-	794	6	FSM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	10	0	0	multi-exon	FALSE	canonical	3	311	junction_3	42.8691030930203	2408	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGCTTCTGCTAATTGG	NA	False	NA	NA	False	NA	NA	NA	110987643	110976945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110977078_110978801_110978850_110982520_110982666_110983845_110983936_110984172_110984270_110987361
60434	chr6	-	1783	6	FSM	ENSMUSG00000072623.7	ENSMUST00000161170.2	3968	6	45	2140	45	-2140	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	16	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACTTTTCTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	118456236	118441050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_118442362_118442795_118442860_118443788_118443882_118444199_118444327_118454267_118454386_118456166
60435	chr3	+	1439	3	NIC	ENSMUSG00000087260.6	novel	881	4	NA	NA	51	-6	intron_retention	FALSE	canonical	3	1062	junction_1	68.5	10	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGAAAGTTTGGTTCAT	3202	False	NA	NA	False	NA	NA	NA	107186365	107191389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_107187248_107189224_107189343_107190950
60436	chr9	+	1506	14	NIC	ENSMUSG00000025237.17	novel	2631	24	NA	NA	-2072	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	19.9437077618466	1	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCTGTGGACTGGATATG	NA	False	NA	NA	False	NA	NA	NA	59535833	59557552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59535952_59537901_59538053_59538622_59538677_59540198_59540295_59540794_59540888_59542138_59542265_59543952_59544019_59544916_59544985_59547046_59547096_59547322_59547433_59556112_59556193_59556572_59556637_59556801_59556887_59557206
60438	chr18	+	1521	12	NNC	ENSMUSG00000038903.14	novel	1618	11	NA	NA	26	-56	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	11.9958670568776	48	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGGTGAATGATGTAATT	NA	False	NA	NA	False	NA	NA	NA	70058672	70102499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_70058692_70063209_70063305_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
60439	SIRV6	+	729	4	NNC	SIRV6A	novel	783	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10033.6625859598	5	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_10727_10780_10819_11031_11109_11205
60442	chrY	+	1008	2	Intergenic	novelGene_4717	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGACACCAA	9390	False	NA	NA	False	NA	NA	NA	90750761	90751874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_90751506_90751610
60443	chr4	+	1370	11	NIC	ENSMUSG00000028820.14	novel	925	10	NA	NA	-563	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	302.937105683672	140	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	NA	False	NA	NA	NA	126916612	126930806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126929600_126929648_126930355_126930443_126930724
60444	chr18	+	830	1	Intergenic	novelGene_4519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGATTATGGAACACCTGA	NA	False	NA	NA	False	NA	NA	NA	24850762	24851592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_24850800_24851600
60445	chr7	+	1747	13	FSM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	-6	8	-6	-4	multi-exon	FALSE	canonical	0	0	junction_1	93.7171794401764	34	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAAAACAGGCTCGTGTG	NA	False	NA	NA	False	NA	NA	NA	105385925	105392121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_105386014_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
60446	chr14	-	2098	3	NNC	ENSMUSG00000022114.6	novel	2087	2	NA	NA	1109	-432	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.5	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTTGTATATACGATAA	NA	False	NA	NA	False	NA	NA	NA	106133144	106129812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_106130005_106130159_106131236_106132314
60448	chr7	-	1193	8	FSM	ENSMUSG00000030798.16	ENSMUST00000098461.10	1227	8	23	11	-2	0	multi-exon	FALSE	canonical	3	49	junction_1	15.6426940630769	338	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGCTTTTTTTTTTTTTT	4442	False	NA	NA	False	NA	NA	NA	44888241	44883066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
60451	chr15	+	367	1	Intergenic	novelGene_3204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACGCACACCATTGTC	NA	False	NA	NA	False	NA	NA	NA	6063887	6064254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_6063900_6064300
60452	chr15	+	1863	1	FSM	ENSMUSG00000115093.2	ENSMUST00000227373.2	860	1	-86	-917	-86	917	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAACTCAGTGCTACAAAC	NA	False	NA	NA	False	NA	NA	NA	6064355	6066218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_6064400_6066200
60453	chr17	+	1223	3	FSM	ENSMUSG00000013766.12	ENSMUST00000013910.5	1142	3	-83	2	-48	-2	multi-exon	FALSE	canonical	3	419	junction_2	34.5	664	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTAAGAGAGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35295829	35297778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35296183_35296812_35296939_35297034
60454	chr5	-	1760	3	NNC	ENSMUSG00000106028.2	novel	489	6	NA	NA	2242	2714	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	4.5	85	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAATATTGTTCAATAGAA	NA	False	NA	NA	False	NA	NA	NA	109699780	109697043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109698443_109699328_109699436_109699526
60455	chr8	-	1384	3	ISM	ENSMUSG00000031916.18	ENSMUST00000034391.4	2954	6	3668	2425	1241	-2425	internal_fragment	FALSE	canonical	3	146	junction_1	5.5	9	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACAACTGTCGCCACTCGC	NA	False	NA	NA	False	NA	NA	NA	107779648	107775351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_107775763_107776773_107776943_107778844
60456	chr10	+	944	7	NNC	ENSMUSG00000020186.8	novel	1384	6	NA	NA	-13	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	93.9883266983488	1902	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGTACCACCTCTTAAT	NA	False	NA	NA	False	NA	NA	NA	110756037	110775356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_110756116_110767815_110767929_110770479_110770555_110771008_110771178_110773597_110773728_110774497_110774592_110775071
60457	chr2	+	2402	1	Intergenic	novelGene_2574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCTTAAACTTAATATTC	NA	False	NA	NA	False	NA	NA	NA	20545971	20548373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_20546000_20548400
60458	chr8	-	1098	13	NIC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	14	-2	combination_of_known_splicesites	FALSE	canonical	1	55	junction_1	1121.05263963533	14	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTGACTGTGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	84321080	84298330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84298533_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
60459	chr11	+	3362	16	FSM	ENSMUSG00000020785.18	ENSMUST00000092937.13	3424	16	47	15	47	-4	multi-exon	FALSE	canonical	2	15	junction_1	5.11815939137846	14	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTTTAAAAAAAAAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	72909915	72932884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72909954_72916362_72916764_72917410_72917459_72917840_72917895_72918255_72918308_72918517_72918652_72919054_72919092_72919967_72919990_72921628_72921718_72924584_72924785_72927299_72927354_72928020_72928095_72928363_72928452_72928674_72928804_72929237_72929342_72931046
60460	chr7	-	3827	14	FSM	ENSMUSG00000030737.18	ENSMUST00000107088.8	4369	14	515	27	515	-27	multi-exon	FALSE	canonical	0	0	junction_5	2.1483446221183	9	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATAATGACTCTTCCACG	NA	False	NA	NA	False	NA	NA	NA	99355853	99307622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99309384_99310310_99310432_99310724_99310790_99311653_99311818_99313985_99314152_99316098_99316457_99320156_99320251_99331901_99332093_99334682_99334782_99335090_99335325_99338069_99338233_99339638_99339777_99340963_99341101_99355717
60461	chr9	+	939	6	NNC	ENSMUSG00000032518.7	novel	1599	6	NA	NA	-320	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2008.1783187755	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTCTTATGGTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	119957551	119960620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960236_119960482
60462	chr14	-	1115	8	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	68	-116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1550.72595244674	1	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCACTCCTGAGACTTATT	NA	False	NA	NA	False	NA	NA	NA	63737640	63729911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730237_63731225_63731461_63731805_63731897_63733168_63733342_63733438_63733554_63734393_63734465_63735046_63735090_63737578
60464	chr19	-	3439	11	NNC	ENSMUSG00000024736.16	novel	3657	11	NA	NA	33	-14	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_6	16.1496129984591	35	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAAAAGAATGGGCATAG	NA	False	NA	NA	False	NA	NA	NA	10847109	10835211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841028_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
60465	chr11	+	2192	8	NIC	ENSMUSG00000018899.18	novel	2136	10	NA	NA	534	-14	intron_retention	FALSE	canonical	3	59	junction_7	8.56428273561249	1	93	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTTGTTTACAGCGTG	NA	False	NA	NA	False	NA	NA	NA	53661868	53668135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_53662202_53663664_53663765_53664481_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
60466	chr5	+	1174	2	NNC	ENSMUSG00000045435.10	novel	1147	2	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	0	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCACATGCCTCTTAC	NA	False	NA	NA	False	NA	NA	NA	21087479	21091868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21087972_21091186
60469	chr12	+	1809	1	Intergenic	novelGene_4428	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTAAAGCAGGCCCACTG	NA	False	NA	NA	False	NA	NA	NA	84509701	84511510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_84509700_84511500
60471	chrX	+	1094	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	1199	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	NA	False	NA	NA	NA	69429482	69433023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_69429758_69431499_69431773_69432477
60472	chr19	+	1425	5	FSM	ENSMUSG00000071649.7	ENSMUST00000096243.7	1603	5	174	4	64	-4	multi-exon	FALSE	canonical	3	179	junction_3	18.060661671157	245	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGGGGCTTCATGGTTTC	4886	False	NA	NA	False	NA	NA	NA	8897911	8904596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8898013_8899169_8899345_8902901_8903263_8903445_8903737_8904099
60473	chr1	-	1903	11	NNC	ENSMUSG00000026466.17	novel	2723	11	NA	NA	484	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	42.2298472647013	12	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTAATTATCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	155911312	155882526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155895713_155895770_155898045_155898127_155898894_155898934_155906134_155906178_155907159_155907220_155909471_155909547_155910860
60475	chr17	-	2220	1	Intergenic	novelGene_18	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGCTCACAACCATCTGGA	NA	False	NA	NA	False	NA	NA	NA	15260208	15257988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_15258000_15260200
60477	chr3	-	2254	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	82	926	82	-926	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	1	114	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAGTTGGCAGCAGTAT	NA	False	NA	NA	False	NA	NA	NA	108053380	108015521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
60478	chr7	+	902	2	Antisense	novelGene_ENSMUSG00000086583.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCGAGAACTTCTTGC	6907	False	NA	NA	False	NA	NA	NA	114304444	114305470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_114305147_114305270
60480	chr6	-	2166	15	ISM	ENSMUSG00000029695.14	ENSMUST00000031707.14	3701	24	25287	331	19881	-331	3prime_fragment	FALSE	canonical	0	0	junction_6	4.49092054560519	18	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTTCTCTTGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	23107698	23072502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_23073090_23074526_23074704_23075160_23075250_23075739_23075856_23077077_23077174_23078826_23078995_23091197_23091339_23092263_23092373_23092462_23092574_23093894_23094022_23094188_23094311_23096824_23096893_23097141_23097202_23107138_23107251_23107615
60481	chr3	-	1699	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	96.1607450516524	6	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTCTCATGGTCATG	NA	False	NA	-119	True	NA	NA	NA	75563043	75554755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75555767_75555831_75556298_75562696_75562869_75562993
60483	chr13	+	650	3	ISM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	410	-222	410	-5	3prime_fragment	FALSE	canonical	3	19809	junction_2	171.5	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGACCTGGTCTATAGGA	NA	False	NA	NA	False	NA	NA	NA	91071745	91073064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_91071866_91072444_91072566_91072655
60485	chr2	-	2935	12	NNC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	-4	-789	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.4437178262115	100	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGCTTCCTCTCTAACC	9025	False	NA	NA	False	NA	NA	NA	13549483	13514613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_13516108_13516175_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
60488	chr2	+	2625	10	ISM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	15	8333	-4	6262	5prime_fragment	FALSE	canonical	3	30	junction_5	13.0620551197205	33	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGAAGGTGGTGGGAGGC	4448	False	NA	NA	False	NA	NA	NA	4564581	4609062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_4565102_4570862_4571002_4577108_4577251_4591171_4591306_4595430_4595554_4599349_4599579_4602148_4602206_4605925_4606167_4606925_4607091_4608187
60490	chr7	+	2725	1	NIC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	688	-1358	mono-exon	FALSE	NA	NA	NA	NA	NA	14	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTCATCCCTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	16517010	16519735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_16517000_16519700
60491	chr4	+	707	2	ISM	ENSMUSG00000028834.14	ENSMUST00000135576.2	1428	7	7770	42	7770	-23	3prime_fragment	FALSE	canonical	3	16	junction_1	0	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATGAAAAAGAATAAAAAAT	2345	False	NA	NA	False	NA	NA	NA	134055068	134056897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_134055094_134056215
60493	chr10	+	1219	6	Antisense	novelGene_ENSMUSG00000062981.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	227	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCTAAAGGCGCCGTCCA	NA	False	NA	NA	False	NA	NA	NA	95316558	95337795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_95316837_95326104_95326729_95329492_95329578_95332685_95332750_95336244_95336384_95337766
60494	chr13	-	1157	3	NNC	ENSMUSG00000036376.4	novel	4456	3	NA	NA	-3	-3187	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	106	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATATGCTTTTTAGTTT	NA	False	NA	NA	False	NA	NA	NA	23608039	23605717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_23606506_23606652_23606853_23607870
60495	chr7	+	1118	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	132	17	0	-17	multi-exon	FALSE	canonical	3	645	junction_5	36.3137901908447	3	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGTTTGAACACAGCG	NA	False	NA	NA	False	NA	NA	NA	28524773	28531655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
60496	chr5	+	1707	5	ISM	ENSMUSG00000029439.15	ENSMUST00000198266.5	2107	8	9712	15	-1506	-15	3prime_fragment	FALSE	canonical	3	39	junction_1	34.8496771864532	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTTTCTAGCTAGCAGC	NA	False	NA	NA	False	NA	NA	NA	129635716	129648430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129636686_129637743_129637870_129646704_129646879_129647539_129647613_129648065
60497	chr9	+	752	1	Antisense	novelGene_ENSMUSG00000032400.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCTAAGAAGTTAAACTGA	NA	False	NA	NA	False	NA	NA	NA	64079420	64080172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_64079400_64080200
60498	chr1	+	2059	12	ISM	ENSMUSG00000026117.11	ENSMUST00000027291.7	2245	13	9024	21	-170	-18	3prime_fragment	FALSE	canonical	1	6	junction_1	10.7626535177809	9	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTCCACTTCTCTTGG	NA	False	NA	NA	False	NA	NA	NA	36809902	36821878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_36810294_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
60499	chr15	+	1292	9	Antisense	novelGene_ENSMUSG00000063354.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGTCACTGTGGTCCTC	NA	False	NA	NA	False	NA	NA	NA	76496614	76499055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_76496864_76496954_76497138_76497396_76497559_76497658_76497710_76497795_76497920_76497988_76498144_76498254_76498345_76498686_76498859_76498949
60501	chr3	+	2045	7	NIC	ENSMUSG00000004897.17	novel	763	6	NA	NA	-29	-19	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	1377.4807520333	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCTGATTACTATCCTGAT	NA	False	NA	NA	False	NA	NA	NA	87814329	87823420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_87814473_87820397_87820475_87820619_87820759_87821147_87821218_87821358_87821545_87821779_87821998_87822208
60502	chr19	-	693	4	FSM	ENSMUSG00000079478.10	ENSMUST00000025885.6	699	4	0	6	0	-2	multi-exon	FALSE	canonical	3	466	junction_2	15.6276108929747	956	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGTGGTTTGTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	5781755	5780336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5780741_5781268_5781354_5781471_5781624_5781703
60503	chr13	-	1193	8	NIC	ENSMUSG00000021368.16	novel	1246	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_5	95.3076650663952	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCCTGGCGTGGCCAT	NA	False	NA	NA	False	NA	NA	NA	43324946	43305219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318908_43322249_43322331_43323277_43323424_43324784
60505	chr11	-	2019	9	FSM	ENSMUSG00000057286.7	ENSMUST00000079545.6	3643	9	222	1402	-37	-816	multi-exon	TRUE	canonical	3	12	junction_5	7.34421541078419	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTTTTCCACATTTC	NA	False	NA	NA	False	NA	NA	NA	116585472	116567530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116568508_116569291_116569392_116570732_116570817_116572684_116572789_116575171_116575311_116575922_116576092_116576661_116576837_116581137_116581199_116585262
60506	chr17	+	2138	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	84	7	27	-7	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	2	37	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGACGTGTCTGGACCA	2063	False	NA	NA	False	NA	NA	NA	34159717	34168664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
60507	chr9	+	1709	1	Genic_Genomic	ENSMUSG00000036768.7	novel	NA	NA	NA	NA	-2735	1053	mono-exon	FALSE	NA	NA	NA	NA	NA	6	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGAGCTTCGTCTCTA	NA	False	NA	NA	False	NA	NA	NA	122789857	122791566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_122789900_122791600
60509	chr15	+	2161	9	NNC	ENSMUSG00000003352.15	novel	2477	13	NA	NA	350	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	20.8052727691804	45	21	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	3201	False	NA	NA	False	NA	NA	NA	98537719	98542410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98537818_98538219_98538336_98538566_98538632_98539046_98539148_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
60510	chr2	-	649	4	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	6213	10577	-1259	-2280	internal_fragment	FALSE	canonical	3	725	junction_3	13.9124245031395	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAATGGAGAGCCATGTA	1352	False	NA	NA	False	NA	NA	NA	5011389	5006111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_5006192_5008818_5008987_5009756_5009923_5011154
60511	chr3	-	1222	7	FSM	ENSMUSG00000028104.15	ENSMUST00000145001.2	607	7	12	-627	12	-3	multi-exon	TRUE	canonical	3	25	junction_6	26.9794160220137	81	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACATGTCTAACAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	96501463	96485190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
60512	chr2	+	1137	11	FSM	ENSMUSG00000027222.15	ENSMUST00000155891.8	1167	11	29	1	29	-1	multi-exon	FALSE	canonical	2	7	junction_1	67.8416538713496	35	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCATGTGGCTCTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	92205049	92211560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_92205167_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
60513	chr19	-	1820	6	FSM	ENSMUSG00000024970.6	ENSMUST00000025924.4	3152	6	109	1223	36	0	multi-exon	FALSE	canonical	3	309	junction_2	10.2293694820355	165	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTGGGCTATCATT	NA	False	NA	NA	False	NA	NA	NA	7360250	7335050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7335853_7351021_7351220_7351386_7351513_7351660_7351811_7351885_7352216_7360036
60514	chr9	+	1966	1	Antisense	novelGene_ENSMUSG00000039048.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACCCCTCCACGCTATAG	3412	False	NA	NA	False	NA	NA	NA	35120350	35122316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_35120400_35122300
60516	chr3	+	2457	13	NNC	ENSMUSG00000070385.13	novel	751	6	NA	NA	-7515	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	5.83749851296674	16	50	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAACACCGCGAGTGGG	9687	False	NA	NA	False	NA	NA	NA	102993579	103007029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102993875_102994157_102994628_102995652_102995853_102997360_102997491_102998459_102998655_102998932_102999065_102999616_102999781_103001715_103001843_103002029_103002194_103002957_103003079_103005985_103006160_103006341_103006453_103006855
60517	chr17	-	2402	1	NIC	ENSMUSG00000052105.18	novel	7221	14	NA	NA	7156	0	mono-exon	FALSE	NA	NA	NA	NA	NA	67	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACAGGGTCTTGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	66646384	66643982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_66644000_66646400
60518	chr3	-	1390	8	FSM	ENSMUSG00000028104.15	ENSMUST00000091924.10	1427	8	34	3	12	-3	multi-exon	FALSE	canonical	3	65	junction_6	13.8534604827436	122	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACATGTCTAACAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	96501463	96485190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
60521	chr1	+	2869	23	Antisense	novelGene_ENSMUSG00000040648.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	28	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACACGCCTCTTCCCTGCC	NA	False	NA	NA	False	NA	NA	NA	97648944	97697769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_97649004_97651393_97651562_97654915_97655030_97655118_97655227_97656641_97656755_97657632_97657769_97661615_97661835_97662691_97662834_97668186_97668374_97668550_97668670_97668793_97668919_97671778_97671866_97672885_97672997_97673118_97673194_97674136_97674235_97675275_97675374_97677266_97677403_97678303_97678452_97680426_97680531_97682779_97682935_97683610_97683697_97684568_97684659_97697578
60522	chr8	-	3652	2	Antisense	novelGene_ENSMUSG00000046794.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	134	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCACCTTACCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	35854557	35842863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_35843095_35851136
60524	chr1	-	1311	12	FSM	ENSMUSG00000026309.15	ENSMUST00000027534.13	1368	12	42	15	14	-14	multi-exon	FALSE	canonical	3	426	junction_9	38.9197096809944	283	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTTTTCCTAGTTAT	NA	False	NA	NA	False	NA	NA	NA	91326463	91303567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91326372
60525	chr5	-	1013	3	NNC	ENSMUSG00000029600.11	novel	712	3	NA	NA	-1397	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	1.5	116	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCAGTCCTGATACTC	9447	False	NA	NA	False	NA	NA	NA	120745179	120740168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_120740583_120742274_120742313_120744618
60526	chr18	+	2350	3	FSM	ENSMUSG00000019143.16	ENSMUST00000124204.2	769	3	-806	-775	-806	-334	multi-exon	FALSE	canonical	3	117	junction_1	4.5	15	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACACATGTAGTCTTATA	1947	False	NA	NA	False	NA	NA	NA	36922259	36925281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36923304_36923521_36923669_36924122
60527	chr9	+	1761	6	NIC	ENSMUSG00000032599.13	novel	1708	6	NA	NA	-11	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	35.9243649909083	52	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTGCTGCTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	108661009	108683530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108661070_108673262_108673596_108675469_108675693_108676440_108676617_108681740_108681917_108682737
60528	chr7	-	2485	11	NIC	ENSMUSG00000036864.17	novel	2465	12	NA	NA	-70	-5	combination_of_known_junctions	TRUE	canonical	3	37	junction_10	7.82304288624318	35	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAACATTTTTCCAGTTTA	NA	False	NA	NA	False	NA	NA	NA	30251794	30238563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30251632
60529	chr11	+	1216	2	FSM	ENSMUSG00000020397.16	ENSMUST00000128940.2	702	2	27	-541	0	64	multi-exon	FALSE	canonical	3	24	junction_1	0	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTGAAATTATAAAATGT	NA	False	NA	NA	False	NA	NA	NA	46327831	46332418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_46328019_46331389
60530	chr19	-	705	2	Genic_Genomic	ENSMUSG00000080885.2	novel	642	1	NA	NA	-40	71	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATCAAGTTATGCTG	NA	False	NA	NA	False	NA	NA	NA	37273235	37272482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_37272616_37272663
60531	chr10	+	1146	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	45	3	-16	-3	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	584	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTGGATTTCTTAATTA	NA	False	NA	NA	False	NA	NA	NA	83558773	83598623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
60532	chr3	-	1539	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	-7	1561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	15	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTTTGCACAAAATTCTC	NA	False	NA	NA	False	NA	NA	NA	53771194	53763681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764302_53764710_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
60533	chr3	+	2186	2	NIC	ENSMUSG00000037211.13	novel	2481	3	NA	NA	4	-2	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	0	49	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCGAGTGCATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	37694110	37698745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_37694255_37696703
60534	chr17	+	1167	7	ISM	ENSMUSG00000024299.18	ENSMUST00000173241.8	3982	23	0	16370	0	-456	5prime_fragment	FALSE	canonical	3	19	junction_5	6.89605362185907	30	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGACACAGCTGTGCTCA	NA	False	NA	NA	False	NA	NA	NA	33743182	33756371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553_33750772_33756060_33756150_33756252
60536	chr17	+	935	3	ISM	ENSMUSG00000024299.18	ENSMUST00000174666.2	2422	13	7574	17	7574	-2	3prime_fragment	FALSE	canonical	3	25	junction_1	4.5	7	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATTTCTGCTCCTGACC	9004	False	NA	NA	False	NA	NA	NA	33770073	33772739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_33770165_33770241_33770405_33772058
60537	chr2	+	2106	2	ISM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	2265	4	2251	-4	3prime_fragment	FALSE	canonical	3	54	junction_1	0	65	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACACCTGGCGGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	131754112	131780345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_131754213_131778339
60538	chr5	+	1554	11	NNC	ENSMUSG00000029199.12	novel	1668	11	NA	NA	1	-37	intron_retention	FALSE	non_canonical	0	0	junction_8	113.747307660445	2	61	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTGAAATTTCTTTTCT	6955	False	NA	NA	False	NA	NA	NA	65548908	65566513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560092_65561510_65561582_65562672_65562785_65566077
60539	chr13	-	1728	4	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	-2	-3	intron_retention	FALSE	canonical	2	10	junction_1	276.127184866362	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATCCCTTCGTATTTCCTG	NA	False	NA	NA	False	NA	NA	NA	108295159	108189125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_108189489_108216835_108217928_108228067_108228158_108294976
60540	chr12	-	1381	8	NNC	ENSMUSG00000021028.9	novel	1512	9	NA	NA	18	-13	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_5	124.346290656376	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTATAAACTTTTTCATG	NA	False	NA	NA	False	NA	NA	NA	56392661	56375100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_56375582_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56387169_56387389_56389020_56389141_56392456
60541	chr10	-	1290	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1866.77376393453	1	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959829	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955393_90955557_90957779_90957906_90959419_90959569_90959777
60542	chr5	+	1036	6	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	238.316931836578	13	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	124254182	124256259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124254282_124254416_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
60543	chr5	-	1412	7	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	29	-486	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_2	226.213026444839	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACCACAGCAGGTGCCG	NA	False	NA	NA	False	NA	NA	NA	121045555	121034804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121035088_121035242_121035312_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
60544	chr6	+	1172	9	NNC	ENSMUSG00000040112.10	novel	4162	8	NA	NA	8	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	301.070148594974	146	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGGGAGAATCCTTAAG	NA	False	NA	NA	False	NA	NA	NA	146944269	146972380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146944458_146946072_146946141_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
60546	chr2	-	824	8	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1552.32470830043	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAGTCTCATTATTAAT	9596	False	NA	NA	False	NA	NA	NA	10085229	10060843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063878_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
60547	chr7	+	1214	6	Antisense	novelGene_ENSMUSG00000030595.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	324	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCTATCGGGAATTCCCC	6501	False	NA	NA	False	NA	NA	NA	28458467	28465921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_28458629_28459250_28459521_28459600_28459690_28461025_28461361_28461450_28461557_28465668
60549	chr1	-	1914	6	ISM	ENSMUSG00000048234.14	ENSMUST00000062525.11	2492	7	12072	0	-6576	0	3prime_fragment	FALSE	canonical	3	163	junction_3	12.3028451993838	132	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCTATGTAACAAATTT	4194	False	NA	NA	False	NA	NA	NA	39604414	39590376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_39591597_39594558_39594752_39597395_39597493_39599773_39599857_39603128_39603198_39604162
60550	chr11	-	2604	9	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-3	1614	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	290.582147378327	1	164	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGGCGGAGTCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	95873440	95852647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860785_95870446_95870496_95873327
60551	chr7	+	2233	3	FSM	ENSMUSG00000038797.14	ENSMUST00000132163.8	699	3	15	-1549	15	-19	multi-exon	FALSE	canonical	2	4	junction_1	2	22	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGAGTTTTTGCCAGA	2903	False	NA	NA	False	NA	NA	NA	80510682	80526266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_80510826_80512912_80513420_80524683
60552	chr7	+	3649	20	ISM	ENSMUSG00000030830.19	ENSMUST00000118405.2	3909	21	752	72	752	-72	3prime_fragment	FALSE	canonical	1	2	junction_5	3.49910950286203	8	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTATTAGGGTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	126909441	126934237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126909509_126909797_126909936_126910389_126910588_126910714_126910846_126913230_126913392_126913483_126913636_126916448_126916536_126921066_126921121_126921223_126921295_126921652_126921795_126923716_126923828_126924193_126924274_126924368_126924456_126926880_126926957_126927358_126927473_126927670_126927728_126927824_126927927_126928596_126928693_126929300_126929412_126932623
60553	chr11	-	702	3	ISM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	7450	0	7450	0	3prime_fragment	TRUE	canonical	3	253	junction_2	54	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	NA	False	NA	NA	NA	62164751	62158049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_62158433_62159529_62159635_62164537
60556	chr8	+	729	6	NNC	ENSMUSG00000031783.11	novel	530	7	NA	NA	7	168	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1027.12149232698	18	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCATGCGTCATCGTGC	NA	False	NA	NA	False	NA	NA	NA	95584152	95590537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587129_95588338_95588414_95590176
60557	chr6	+	1394	12	NNC	ENSMUSG00000068328.11	novel	1769	12	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	1	56	junction_8	398.689630524301	1	73	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGTCTCTGTTGCCTC	5424	False	NA	NA	False	NA	NA	NA	83031712	83034658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033117_83033348_83033416_83033522_83033626_83033767_83033860_83033958_83034075_83034256_83034376_83034478
60558	chr10	-	1076	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-14	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1418.9926493428	4	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGATAAGTTACTGTGG	5586	False	NA	NA	False	NA	NA	NA	79875558	79871796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79872125_79872353_79872433_79872597_79872698_79872748_79872808_79873021_79873219_79874276_79874448_79875416
60560	chr8	+	1280	7	Antisense	novelGene_ENSMUSG00000088054.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCCCGGGGCGCGCGA	NA	False	NA	NA	False	NA	NA	NA	13226943	13250595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_13227143_13229322_13229759_13236885_13236979_13239621_13239748_13242049_13242209_13250048_13250200_13250479
60561	chr8	-	2022	10	NNC	ENSMUSG00000031667.17	novel	2079	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	161.789987329253	1	93	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGCTGTTAAATAATTTT	NA	False	NA	NA	False	NA	NA	NA	91860600	91850196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_91851310_91851450_91851512_91852444_91852553_91852652_91852743_91852821_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
60562	chr11	+	963	2	NNC	ENSMUSG00000018372.14	novel	2597	19	NA	NA	-2657	-3164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGGTAACCACCTTGAAT	NA	False	NA	NA	False	NA	NA	NA	106700494	106701501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106701068_106701111
60564	chr11	+	1685	5	FSM	ENSMUSG00000049811.18	ENSMUST00000109557.10	1947	5	10	252	10	-235	multi-exon	FALSE	canonical	1	1	junction_1	6.96419413859206	4	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCAGAAGAGGCCGATGT	NA	False	NA	NA	False	NA	NA	NA	22958474	22973489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22958627_22963538_22963648_22965654_22965885_22969999_22971134_22973429
60565	chr8	-	3064	26	ISM	ENSMUSG00000070000.14	ENSMUST00000143699.8	3351	27	3826	234	25	-1	3prime_fragment	TRUE	non_canonical	0	0	junction_16	36.7204357272623	11	32	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAACAAAATAAAGAGGAATC	NA	False	NA	NA	False	NA	NA	NA	72174484	72161297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_72161476_72161569_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462
60566	chrX	-	1040	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	-7	-1	3	1	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	1546	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGTGGCAAATAGTCCT	NA	False	NA	NA	False	NA	NA	NA	52799670	52785713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
60567	chr11	-	1641	8	NIC	ENSMUSG00000018570.18	novel	2009	8	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	5.03457433905888	62	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGGGAGCTGCGTG	9707	False	NA	NA	False	NA	NA	NA	69791802	69788186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790753_69791128
60568	chr13	+	787	7	NNC	ENSMUSG00000015671.12	novel	2911	8	NA	NA	12	-2052	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1765.80469537891	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAATTTTAGTTTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	14787836	14800169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795396_14799777_14799846_14799933
60569	chr17	-	931	1	Antisense	novelGene_ENSMUSG00000024014.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAGTAAAAAAAAAAAAAAAA	4089	False	NA	NA	False	NA	NA	NA	29712909	29711978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29712000_29712900
60570	chr14	+	855	1	Intergenic	novelGene_538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAATCTCTAAGAAGACA	1670	False	NA	NA	False	NA	NA	NA	31667487	31668342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_31667500_31668300
60572	chr17	+	2773	1	Intergenic	novelGene_139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGAAGAACCTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	34762698	34765471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_34762700_34765500
60573	chr17	+	3045	8	NNC	ENSMUSG00000034729.17	novel	1018	7	NA	NA	-1	-22	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_7	643.731500625811	81	111	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCACTGGCCACTTCAACC	7147	False	NA	NA	False	NA	NA	NA	47679821	47692320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126_47689322_47690002
60574	chr6	-	2839	12	FSM	ENSMUSG00000038521.18	ENSMUST00000162443.8	2906	12	59	8	3	-8	multi-exon	FALSE	canonical	1	3	junction_4	4.09797369803078	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGAACATTGCTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	124519259	124507314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124508700_124509499_124509575_124510232_124510362_124510854_124510934_124511316_124511433_124512191_124512346_124513290_124513491_124514319_124514446_124517279_124517458_124517747_124517956_124518291_124518448_124519226
60575	chr3	+	2978	7	NIC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	89	-200	intron_retention	FALSE	canonical	3	74	junction_6	11.0063113207327	7	97	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGGCGGGCCAGGCA	NA	False	NA	NA	False	NA	NA	NA	104688460	104693134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692336_104692501_104692610_104692713
60576	chr15	+	2716	5	Antisense	novelGene_ENSMUSG00000115009.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAGGAGTCAGACACAAA	NA	False	NA	NA	False	NA	NA	NA	38436525	38455489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_38438616_38445371_38445504_38453406_38453643_38454910_38455062_38455382
60577	chr16	-	1553	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	27	4	combination_of_known_junctions	FALSE	canonical	3	52	junction_8	63.9256159532311	464	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGGCTTTTTCTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18161734	18118684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161661
60580	chr17	-	3306	2	ISM	ENSMUSG00000024070.16	ENSMUST00000118768.8	2847	18	55138	-2225	32081	-11	3prime_fragment	FALSE	canonical	3	110	junction_1	0	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACCATACTTTCCTAT	NA	False	NA	NA	False	NA	NA	NA	79260796	79256844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_79259460_79260105
60581	chr15	+	1434	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-7	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	348.759109797388	114	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	48	False	NA	NA	False	NA	NA	NA	10486147	10493763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492990_10493239_10493477_10493557
60582	chr5	-	2888	1	Antisense	novelGene_ENSMUSG00000106968.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTCATGGTATCCCCATC	NA	False	NA	NA	False	NA	NA	NA	74106639	74103751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_74103800_74106600
60583	chr4	+	1050	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	23	3	0	0	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	230	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	False	NA	NA	False	NA	NA	NA	155334445	155341141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
60584	chr11	-	2269	12	NNC	ENSMUSG00000086976.2	novel	406	2	NA	NA	-1242	1587	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	149	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTAGTCCATGGCCTTCTT	9350	False	NA	NA	False	NA	NA	NA	70505279	70500450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70500542_70500901_70501010_70501091_70501228_70501424_70501533_70502132_70502303_70502410_70502554_70503060_70503197_70503305_70503406_70503489_70503642_70503732_70503892_70503979_70504119_70504452
60585	chr10	-	1665	1	Antisense	novelGene_ENSMUSG00000020156.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCGGTTCTGGCCAAAA	8959	False	NA	NA	False	NA	NA	NA	80066514	80064849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_80064800_80066500
60587	chr7	+	1800	3	NNC	ENSMUSG00000038503.16	novel	4492	3	NA	NA	-10	1096	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	656	1	125	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	NA	False	NA	NA	NA	83541527	83548384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541684_83544753_83544971_83546957
60588	chr3	-	862	1	ISM	ENSMUSG00000028042.16	ENSMUST00000107433.8	3650	3	8682	2	8682	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	41	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTGTCCACTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	89285814	89284952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89285000_89285800
60591	chrX	+	917	7	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_2	575.300621897418	74	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5416	False	NA	NA	False	NA	NA	NA	72830617	72834432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
60592	chr11	-	1303	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	5	1	5	-1	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	743	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGCCTTCTTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	80032996	80027504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
60595	chr9	-	1064	2	ISM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	29007	33	8146	-33	3prime_fragment	FALSE	canonical	3	777	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTGAAATACAAAAACTTCA	NA	False	NA	NA	False	NA	NA	NA	96217488	96214740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_96215748_96217431
60596	chr17	-	1089	1	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACCACGCCCGACTCTCA	NA	False	NA	NA	False	NA	NA	NA	36170562	36169473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36169500_36170600
60597	chr15	-	1130	3	FSM	ENSMUSG00000053929.18	ENSMUST00000177359.2	1110	3	-16	-4	-16	3	multi-exon	FALSE	canonical	3	19	junction_2	30	169	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGGAATTTGTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	76544333	76542335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76543066_76543418_76543640_76544154
60598	chr2	-	1962	8	NNC	ENSMUSG00000034032.16	novel	4546	24	NA	NA	9770	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	220.92855988176	1	117	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGATCTGGACTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	119600913	119594445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595021_119595085_119595219_119595397_119597972_119598730_119599726_119599874_119600060_119600214_119600367_119600481_119600841
60601	chr8	-	824	4	FSM	ENSMUSG00000031879.15	ENSMUST00000163140.2	807	4	-14	-3	-12	0	multi-exon	FALSE	canonical	3	675	junction_1	52.8288641642889	90	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTAGCGTCTCTCATAG	NA	False	NA	NA	False	NA	NA	NA	105368345	105366469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942
60602	chr13	+	159	1	Intergenic	novelGene_1541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCTTCTTGACTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113313492	113313651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113313500_113313700
60603	chr8	+	448	1	Genic_Genomic	ENSMUSG00000079038.4	novel	NA	NA	NA	NA	13165	181	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAGAACAAAC	NA	False	NA	NA	False	NA	NA	NA	69766592	69767040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_69766600_69767000
60604	chr8	+	659	1	Intergenic	novelGene_1652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGGTGGTCTTTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	69769202	69769861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_69769200_69769900
60605	chr19	-	1600	9	Antisense	novelGene_ENSMUSG00000015176.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTCGTCATCAAGTCGC	NA	False	NA	NA	False	NA	NA	NA	46071662	46064385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46064587_46067284_46067453_46067565_46067696_46068345_46068529_46069746_46069851_46069968_46070114_46070684_46070813_46070951_46071072_46071241
60606	chr11	+	2064	2	ISM	ENSMUSG00000020537.10	ENSMUST00000138713.8	969	7	28	3364	-5	-1846	5prime_fragment	FALSE	canonical	3	473	junction_1	0	12	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCCACACCCCCTTTCAG	NA	False	NA	NA	False	NA	NA	NA	60345444	60349315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_60345570_60347376
60608	chr7	-	2278	18	FSM	ENSMUSG00000002968.10	ENSMUST00000003049.8	2619	18	339	2	-7	-2	multi-exon	FALSE	canonical	3	744	junction_9	66.5493546850497	91	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCGGCTCCCGTGACTGA	6994	False	NA	NA	False	NA	NA	NA	44541797	44528809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
60609	chr15	+	2572	10	ISM	ENSMUSG00000036661.15	ENSMUST00000043414.12	5299	23	42733	24	-2343	-24	3prime_fragment	FALSE	canonical	2	4	junction_1	3.89047586666924	16	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATAAATGCTGGTTGC	3838	False	NA	NA	False	NA	NA	NA	73427141	73444067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_73427166_73428196_73428368_73429430_73429561_73434173_73434282_73436345_73436486_73436864_73437023_73438881_73439016_73440270_73440375_73440456_73440595_73442602
60610	chr5	+	894	7	NNC	ENSMUSG00000029203.17	novel	4893	7	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	635.058440005502	90	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	65694796	65752488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751881_65752141
60611	chr13	+	1327	5	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	16	-9	intron_retention	FALSE	canonical	0	0	junction_1	635.746952411099	4	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAAACAGCTGGTCACAT	NA	False	NA	NA	False	NA	NA	NA	43552126	43555461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_43552272_43552991_43553046_43554068_43554895_43554975_43555054_43555237
60613	chr11	-	2617	10	FSM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	204	241	139	-241	multi-exon	FALSE	canonical	3	28	junction_7	3.67507453523138	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGTAAATTGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	53782282	53755608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
60614	chr9	+	2531	6	NIC	ENSMUSG00000063488.7	novel	4722	5	NA	NA	1170	769	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	2.92574776766556	6	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAAGAAGGAAGTCGGGC	NA	False	NA	NA	False	NA	NA	NA	122715919	122725234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_122716131_122717488_122718015_122719723_122719872_122721382_122721457_122721749_122721844_122723756
60615	chr1	-	2005	12	NNC	ENSMUSG00000025920.20	novel	3907	12	NA	NA	9828	152	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_11	37.6389985902393	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTCCCTCCCTCTCCCT	NA	False	NA	NA	False	NA	NA	NA	16579607	16415665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16556243_16556375_16561464_16561619_16579565
60617	chr1	-	1225	2	NNC	ENSMUSG00000097403.3	novel	2097	3	NA	NA	-2174	-2468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGCGCCTGCGCACAGCG	678	False	NA	NA	False	NA	NA	NA	136345431	136343048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_136343160_136344317
60618	chr11	-	1133	6	Antisense	novelGene_ENSMUSG00000018411.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	460	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACACCCCAAGGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	104219261	104200489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_104200603_104201092_104201358_104208979_104209076_104212176_104212255_104213249_104213365_104218795
60620	chr11	-	2202	9	FSM	ENSMUSG00000020876.15	ENSMUST00000021246.9	2551	9	3	346	3	-24	multi-exon	FALSE	canonical	3	53	junction_6	14.0529133990073	36	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTGAAATAAACTGCAAGT	NA	False	NA	NA	False	NA	NA	NA	96668354	96658726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96666199_96666260_96667793_96667888_96668280
60621	chr8	-	1636	12	NNC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	27	181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	555.839577903226	1	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGCTGGAGTACCTCAG	7666	False	NA	NA	False	NA	NA	NA	41827645	41794165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800146_41802586_41802662_41806998_41807138_41807863_41807955_41813289_41813337_41827546
60622	chr13	-	3347	14	NNC	ENSMUSG00000051111.17	novel	9101	13	NA	NA	-113	775	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2.29998713657324	14	45	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCCCAAATCTCCACATC	NA	False	NA	NA	False	NA	NA	NA	96269198	96096895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_96097242_96097314_96097972_96112495_96112656_96113107_96113312_96114548_96114683_96118345_96118511_96122437_96122527_96123223_96123335_96125598_96125689_96126203_96126338_96166990_96167143_96184914_96185096_96224727_96225409_96268955
60623	chr11	+	2203	5	ISM	ENSMUSG00000020525.18	ENSMUST00000020835.16	2899	6	15640	-4	14720	4	3prime_fragment	FALSE	canonical	3	80	junction_4	4.14578098794425	64	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCGTTTTGTTGGTGAC	NA	False	NA	NA	False	NA	NA	NA	85217709	85237896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_85217919_85223076_85223202_85227890_85228082_85230379_85230623_85236461
60624	chr5	+	2434	1	Intergenic	novelGene_823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCTCCGAAAGGAAGCCT	NA	False	NA	NA	False	NA	NA	NA	114081794	114084228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_114081800_114084200
60626	chr18	-	1146	7	FSM	ENSMUSG00000036223.17	ENSMUST00000040188.16	2630	7	8	1476	8	-296	multi-exon	FALSE	canonical	3	11	junction_6	177.375699826354	1652	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTTTCAAAACGTACTG	6773	False	NA	NA	False	NA	NA	NA	74340842	74329845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340600
60627	chr15	+	1359	10	FSM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	7	0	7	0	multi-exon	FALSE	canonical	3	902	junction_1	99.7619388566824	791	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGACGTGTTGGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	88703855	88710886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
60628	chr6	-	2994	6	FSM	ENSMUSG00000037788.15	ENSMUST00000204878.3	769	6	59	-2284	45	-14	multi-exon	FALSE	canonical	2	6	junction_5	6.01331855134916	16	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAATTTAGTCATATGC	NA	False	NA	NA	False	NA	NA	NA	57802076	57729263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_57731662_57739419_57739557_57751695_57751774_57766961_57767021_57785520_57785678_57801911
60630	chrX	-	739	3	NNC	ENSMUSG00000015289.5	novel	761	3	NA	NA	-40	-20	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	696.5	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAATCTGCATTTGAGCTT	4453	False	NA	NA	False	NA	NA	NA	73397264	73395787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_73396105_73396520_73396609_73396930
60633	chr2	-	3263	1	ISM	ENSMUSG00000038740.10	ENSMUST00000041555.10	4998	10	154718	13	55531	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	29	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAACCTCGTTTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	33623240	33619977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_33620000_33623200
60634	chr16	+	1787	9	NNC	ENSMUSG00000063358.18	novel	1747	8	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	211.196590881576	78	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACATTTAAAAATA	NA	False	NA	NA	False	NA	NA	NA	16801272	16856904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_16801445_16801562_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177
60635	chr11	-	1108	9	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	31	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	245.065010507416	311	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCCTGTCCCGGGTGATG	3889	False	NA	NA	False	NA	NA	NA	55310693	55285326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55285727_55289489_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
60638	chr14	-	633	3	FSM	ENSMUSG00000022193.8	ENSMUST00000227257.2	622	3	-9	-2	5	0	multi-exon	FALSE	canonical	2	118	junction_1	868	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8629	False	NA	NA	False	NA	NA	NA	54855474	54851575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54851939_54854232_54854279_54855250
60639	chr8	-	990	3	NNC	ENSMUSG00000046691.15	novel	615	3	NA	NA	6183	482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGCCCAAATCTGGACA	NA	False	NA	NA	False	NA	NA	NA	107613664	107612194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_107612822_107612908_107613159_107613551
60640	chr17	-	1201	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234352.2	1224	6	21	2	1	0	multi-exon	FALSE	canonical	3	81	junction_4	254.082191426318	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	25105302	25101592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105252
60641	chr2	-	991	1	NIC	ENSMUSG00000026831.17	novel	666	3	NA	NA	2861	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	NA	False	NA	NA	NA	28353003	28352012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_28352000_28353000
60643	chr8	-	1188	8	NNC	ENSMUSG00000052456.10	novel	1256	7	NA	NA	2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	746.360010521814	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8402	False	NA	NA	False	NA	NA	NA	85751908	85744559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85744717_85744782_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
60645	chr8	-	1176	5	NNC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	274.595156548691	2245	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACACTTATAGCAACAGTG	NA	False	NA	NA	False	NA	NA	NA	70975748	70966048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70966819_70968044_70968092_70970969_70971168_70972586_70972712_70975712
60646	chr1	+	1470	12	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	890.355727961611	1	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724160	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731545_59735136_59735259_59737481_59737619_59740043_59740109_59744849_59744916_59745791_59745927_59746161_59746224_59748161_59748300_59749657_59749812_59750429
60647	chr15	+	1276	6	NNC	ENSMUSG00000010830.9	novel	1411	5	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	89.7810670464547	8	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAGTATTTATTTATA	NA	False	NA	NA	False	NA	NA	NA	79400658	79411940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79409955_79410042_79410121_79411272
60649	chr17	+	575	3	ISM	ENSMUSG00000015468.15	ENSMUST00000015612.14	6591	30	44	22736	14	151	5prime_fragment	FALSE	canonical	3	64	junction_1	7.5	4	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAGTACAATCAGGAGGA	NA	False	NA	NA	False	NA	NA	NA	34783285	34784741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34783484_34784274_34784357_34784446
60650	chr17	-	2099	17	NNC	ENSMUSG00000024039.16	novel	6226	17	NA	NA	28	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.082993196712	1	97	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAATGGAATCACATACC	1973	False	NA	NA	False	NA	NA	NA	31856111	31831635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31831681_31831931_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844984_31846445_31846557_31851801_31852129_31856056
60652	chr7	+	3003	2	ISM	ENSMUSG00000033961.17	ENSMUST00000128427.2	3540	4	-1648	3228	-21	-351	5prime_fragment	FALSE	canonical	3	35	junction_1	0	1	99	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGATCCCAGTATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	12711798	12715039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_12713574_12713811
60653	chr1	+	1849	9	NIC	ENSMUSG00000026150.15	novel	1894	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	196.540350500858	255	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	NA	False	NA	NA	NA	82702658	82730111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
60654	chr18	+	783	5	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	1	208	combination_of_known_splicesites	FALSE	canonical	3	109	junction_1	923.262252829606	122	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTGCAAATGTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	80250109	80265761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_80250162_80250368_80250559_80253276_80253346_80261918_80262023_80265393
60655	chr12	-	2778	13	Antisense	novelGene_ENSMUSG00000034601.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	32	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACGCATGCGCGCAAAGA	NA	False	NA	NA	False	NA	NA	NA	71209796	71183947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_71184812_71186427_71186503_71187638_71187707_71188821_71188894_71195017_71195197_71197020_71197237_71199421_71199569_71201532_71201696_71203818_71203943_71205599_71205730_71206962_71207180_71207894_71207969_71209347
60656	chrX	+	1015	3	Antisense	novelGene_ENSMUSG00000057421.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCAATCGCCTTTGCCA	NA	False	NA	NA	False	NA	NA	NA	94978930	94984439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_94979253_94980969_94981131_94983907
60657	chr5	+	1316	1	FSM	ENSMUSG00000043833.7	ENSMUST00000171190.2	2025	1	-17	726	-17	-726	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCAGGATGCATAAATGG	NA	False	NA	NA	False	NA	NA	NA	25305963	25307279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_25306000_25307300
60658	chr12	-	2685	13	Antisense	novelGene_ENSMUSG00000021192.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	75	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGGCTAGCTCTTCCGG	NA	False	NA	NA	False	NA	NA	NA	102464166	102435548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_102435622_102438250_102438822_102440802_102441031_102442426_102442648_102443054_102443178_102445854_102446059_102450657_102450832_102453376_102453505_102455674_102455776_102458268_102458504_102460016_102460117_102461956_102462022_102463704
60659	chr19	+	1477	10	NNC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	8	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	188.620724677268	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAAGCCAGGTTTGACCT	3596	False	NA	NA	False	NA	NA	NA	4198638	4204024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4198729_4199340_4199369_4200163_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
60660	chr2	+	3352	4	NIC	ENSMUSG00000026743.17	novel	651	6	NA	NA	7	20222	combination_of_known_junctions	FALSE	canonical	3	26	junction_3	71.2242156073964	6	95	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGTGTGTATGTAT	4700	False	NA	NA	False	NA	NA	NA	18069504	18090288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18069650_18069845_18070006_18075935_18076016_18087321
60661	chr6	-	1802	4	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	26	-2039	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	365.396892281378	1	79	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATACAACCTTAAATTTG	4263	False	NA	NA	False	NA	NA	NA	35516708	35487879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35489253_35498834_35498919_35499616_35499727_35516473
60663	chr2	+	1878	8	NNC	ENSMUSG00000064289.16	novel	2039	8	NA	NA	-2	-28	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	18.8441513689613	4	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATGATTAAATGACTTAAA	NA	False	NA	NA	False	NA	NA	NA	61423505	61484406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474163_61474650_61474767_61480081_61480633_61483722
60664	chr18	-	2388	2	ISM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	20290	20	15893	-20	3prime_fragment	FALSE	canonical	3	107	junction_1	0	2	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGTCAACTCAGTGGCA	NA	False	NA	NA	False	NA	NA	NA	24716584	24712957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_24714135_24715373
60665	chr5	-	1366	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	-63	4	-34	-1	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	478	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCTCTGGTGAGATAA	NA	False	NA	NA	False	NA	NA	NA	90371894	90362586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
60666	chr6	-	795	1	Intergenic	novelGene_4148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAACCAGACATTTCTCA	NA	False	NA	NA	False	NA	NA	NA	43398714	43397919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_43397900_43398700
60667	chr11	+	1193	8	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	180	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	297.095394561053	2	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAACCAAGCCACCCCCC	1410	False	NA	NA	False	NA	NA	NA	101010943	101017235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011660_101011686_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
60669	chr5	-	2418	13	NNC	ENSMUSG00000053134.14	novel	1899	2	NA	NA	-26218	-1551	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTCAAAATGTGTCCCTC	1900	False	NA	NA	False	NA	NA	NA	31711369	31684351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31685027_31685384_31685582_31687975_31688097_31689312_31689376_31689785_31689926_31691386_31691549_31692200_31692270_31693479_31693669_31697729_31697841_31701012_31701257_31703522_31703605_31705947_31706026_31711082
60670	chr7	-	1074	1	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCAGGGCTGGGAGGAGA	1610	False	NA	NA	False	NA	NA	NA	13021604	13020530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13020500_13021600
60672	chr4	+	2319	7	Antisense	novelGene_ENSMUSG00000028232.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCTGAGAGGAAGAAGGC	NA	False	NA	NA	False	NA	NA	NA	3549307	3574798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_3550578_3551746_3551891_3554352_3554415_3560498_3560695_3564094_3564256_3569361_3569752_3574702
60673	chr2	-	1282	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	166	105	16	-105	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	32	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTTTGTGATTTCGC	NA	False	NA	NA	False	NA	NA	NA	174314708	174306964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
60674	chr4	+	1197	9	NIC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	-4	-3	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	129.727599222371	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGTGTGTGTCCTTCAGC	NA	False	NA	NA	False	NA	NA	NA	107171555	107217016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107216803
60675	chr12	+	1163	9	NNC	ENSMUSG00000021076.7	novel	4022	13	NA	NA	-1375	989	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	154.246100031735	97	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCATTGCTCTTGTGCT	2186	False	NA	NA	False	NA	NA	NA	70999722	71009824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640_71008874_71009227_71009570_71009791
60676	chr7	-	768	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207779.2	774	7	6	0	6	0	multi-exon	FALSE	canonical	0	0	junction_3	293.234831946457	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9296	False	NA	NA	False	NA	NA	NA	30428926	30427125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427923_30427994_30428081_30428142_30428626_30428697_30428768
60677	chr1	-	2794	10	FSM	ENSMUSG00000041605.17	ENSMUST00000120339.8	2988	10	194	0	49	0	multi-exon	TRUE	canonical	3	39	junction_9	8.93736780097342	67	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGAAGGATTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	136161808	136141268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136161640
60678	chr7	-	2584	11	NIC	ENSMUSG00000008318.11	novel	2851	11	NA	NA	73	-328	combination_of_known_junctions	FALSE	canonical	3	11	junction_10	10.0179838290946	27	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCGTCATGAGGTGCTTC	2279	False	NA	NA	False	NA	NA	NA	100512532	100495381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512318
60679	chr11	+	1736	12	NIC	ENSMUSG00000037533.21	novel	1829	13	NA	NA	-3	-4	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	28.1436691940209	34	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCTTTTATGCTCATTA	NA	False	NA	NA	False	NA	NA	NA	54413733	54525831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_54413945_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585
60681	chr12	-	2464	1	Genic_Genomic	ENSMUSG00000071456.7	novel	NA	NA	NA	NA	-2361	-19685	mono-exon	FALSE	NA	NA	NA	NA	NA	7	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAAGCAGCTTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	3479372	3476908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_3476900_3479400
60682	chr17	-	1428	13	FSM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	10	14	-8	0	multi-exon	FALSE	canonical	3	70	junction_5	27.2308801424657	250	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	NA	False	NA	NA	NA	36220957	36208500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
60683	chr4	+	887	6	NNC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	4	243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	11479.8553719113	6	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGATTCATTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	116542799	116556712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116542858_116544603_116544721_116548972_116549098_116550079_116550207_116550920_116551045_116556376
60684	chr16	-	1076	4	FSM	ENSMUSG00000022671.14	ENSMUST00000229680.2	1066	4	-7	-3	-7	0	multi-exon	FALSE	canonical	2	7	junction_2	282.609664063744	3458	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	15681181	15666306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15666594_15678561_15678635_15680261_15680408_15680611
60685	chr9	-	490	1	Antisense	novelGene_ENSMUSG00000032294.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCTAGAAGAGGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	59586636	59586146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_59586100_59586600
60686	chrX	+	2095	1	Intergenic	novelGene_4073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCCCAGCACTCGGGAG	NA	False	NA	NA	False	NA	NA	NA	143112532	143114627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_143112500_143114600
60688	chr9	+	576	1	ISM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	53786	2439	8432	-2439	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTTAAAACACATATCTC	NA	False	NA	NA	False	NA	NA	NA	14241382	14241958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_14241400_14242000
60689	chr9	+	2439	1	ISM	ENSMUSG00000032009.9	ENSMUST00000208222.2	9125	10	54362	0	9008	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCTTTCTTTCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	14241958	14244397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_14242000_14244400
60691	chr10	+	1148	4	Antisense	novelGene_ENSMUSG00000020171.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGGAGGGCGGCGGCGC	NA	False	NA	NA	False	NA	NA	NA	117055605	117060397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117056333_117056436_117056503_117058077_117058198_117060162
60692	chr10	-	789	5	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	2	-139	intron_retention	FALSE	canonical	3	98	junction_2	1726.07218490421	417	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGGAAGACTGAATCAAAT	NA	False	NA	NA	False	NA	NA	NA	23663098	23661241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
60693	chrX	+	807	4	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	10984	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1171.04170150626	1	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCACTTTTTGAATTCTT	NA	False	NA	NA	False	NA	NA	NA	52087997	52110535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52088075_52090964_52091149_52097529_52097625_52110084
60694	chr12	-	843	1	ISM	ENSMUSG00000020961.16	ENSMUST00000052969.15	9896	7	152571	14	80109	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGCAAAGTGACATTGC	NA	False	NA	NA	False	NA	NA	NA	91600639	91599796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_91599800_91600600
60695	chr15	-	1452	7	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	126.951981298267	6	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCATGAAAGTTGCTCTT	6879	False	NA	NA	False	NA	NA	NA	81244982	81203115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213333_81228284_81228363_81244877
60696	chr18	+	1073	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	-27	220	4	-1	multi-exon	FALSE	canonical	3	388	junction_1	205.5	2072	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTCCTGCTTTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	75138943	75143003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_75139186_75141721_75141898_75142348
60697	chr16	-	1400	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	62	3	19	1	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	6	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTGCTTATGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	14135177	14117110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
60698	chr1	-	1182	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	4	0	3	0	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	781	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	NA	False	NA	NA	NA	72323469	72298330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
60699	chr5	-	1559	2	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTGTGCTTCATTTAG	NA	False	NA	NA	False	NA	NA	NA	116560918	116546552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116547480_116560286
60701	chr10	-	3127	4	ISM	ENSMUSG00000047712.9	ENSMUST00000061601.9	4228	8	220696	65	4113	-65	3prime_fragment	FALSE	canonical	3	12	junction_3	2.62466929133727	8	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGAGGTGAAGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	8173893	8080637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_8083435_8121666_8121825_8123852_8123951_8173819
60702	chr14	-	861	6	NIC	ENSMUSG00000021773.12	novel	2314	7	NA	NA	-13	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	112.361915256015	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGACCTTCTGAGCATCCTC	NA	False	NA	NA	False	NA	NA	NA	21898975	21897250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_21897496_21897681_21897816_21898069_21898189_21898277_21898384_21898608_21898737_21898846
60703	chr5	-	2234	15	FSM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	-56	295	-56	0	multi-exon	FALSE	canonical	3	342	junction_8	23.380722043284	21	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGTGGGAAATGAGTG	6628	False	NA	NA	False	NA	NA	NA	136164984	136151920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
60704	chr4	+	1010	1	ISM	ENSMUSG00000028676.18	ENSMUST00000126641.2	3754	6	12025	1127	4477	399	mono-exon	FALSE	NA	NA	NA	NA	NA	5	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGCGTTTATTTCGAGA	NA	False	NA	NA	False	NA	NA	NA	135595082	135596092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_135595100_135596100
60705	chr8	-	3036	16	NNC	ENSMUSG00000034416.19	novel	7389	43	NA	NA	-1904	188	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	8.61523198888006	39	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCTTGAAATAAAATGGAAA	NA	False	NA	NA	False	NA	NA	NA	117757486	117722229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117722580_117724274_117724407_117724814_117724917_117726511_117726723_117736308_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556_117743743_117746143_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017_117755235_117756259_117756475_117757280
60706	chr1	+	1184	5	NNC	ENSMUSG00000039323.19	novel	1307	4	NA	NA	242	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1779.48537153302	1762	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	-4	True	NA	NA	False	NA	NA	NA	72863903	72891633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72864124_72864514_72864634_72888244_72888472_72888722_72888864_72891156
60707	chr1	+	2335	2	NNC	ENSMUSG00000025969.16	novel	6708	16	NA	NA	111760	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTCCTACATTGTCT	NA	False	NA	NA	False	NA	NA	NA	62854620	62857848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_62855911_62856803
60708	chr4	+	578	4	FSM	ENSMUSG00000028618.12	ENSMUST00000141013.8	808	4	-1	231	-1	-28	multi-exon	FALSE	canonical	3	1542	junction_2	144.642855183226	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATGACGGAAAAATAGTTA	NA	False	NA	NA	False	NA	NA	NA	107035862	107047856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731
60709	chr4	+	285	1	ISM	ENSMUSG00000028626.6	ENSMUST00000030372.6	2924	32	15588	65	1974	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCTCTTTTGCCCACAC	NA	False	NA	NA	False	NA	NA	NA	120912169	120912454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_120912200_120912500
60710	chr11	+	3302	24	ISM	ENSMUSG00000020828.14	ENSMUST00000018429.12	3659	25	587	0	537	0	3prime_fragment	FALSE	canonical	2	3	junction_9	5.7017889276459	17	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCCTCTTCTTGGAGA	NA	False	NA	NA	False	NA	NA	NA	70431718	70448936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_70431781_70431888_70432020_70432122_70432266_70432640_70432747_70432826_70432893_70433409_70433469_70433586_70433680_70433768_70433922_70434953_70435104_70442005_70442090_70442211_70442291_70443279_70443391_70443523_70443695_70444160_70444288_70444869_70444989_70445102_70445217_70445404_70445510_70445687_70445777_70445876_70445991_70446157_70446208_70446421_70446557_70446733_70446888_70447833_70447949_70448164
60712	chr4	-	1566	2	Intergenic	novelGene_1901	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTAGCTGTGGGGGATA	NA	False	NA	NA	False	NA	NA	NA	89223202	89221580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_89222473_89222528
60714	chr5	+	3583	15	Antisense	novelGene_ENSMUSG00000029090.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	184	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATTCCCTGAAAGGTTT	NA	False	NA	NA	False	NA	NA	NA	50117468	50168884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_50118857_50118989_50119090_50121037_50121177_50128029_50128158_50129294_50129412_50136290_50136494_50136701_50136919_50144821_50145017_50147466_50147631_50155558_50155715_50156476_50156677_50159196_50159362_50164090_50164310_50166690_50166827_50168828
60715	chr10	-	2552	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	2	5389	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	151.905306761226	1	110	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGTACAAAAGAAATGATC	NA	False	NA	NA	False	NA	NA	NA	116417393	116328500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116363731_116363855_116384937_116385081_116417357
60716	chr17	-	1290	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	93	22	2	-9	multi-exon	FALSE	canonical	3	40	junction_4	8.07387763097757	204	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACACAGTGGATCCTTC	4346	False	NA	NA	False	NA	NA	NA	26004554	26001784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
60717	chr17	-	1308	2	NNC	ENSMUSG00000036820.13	novel	1225	2	NA	NA	17	-18	intron_retention	FALSE	canonical	0	0	junction_1	0	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAATGCTGTTATCCAT	NA	False	NA	NA	False	NA	NA	NA	24382687	24381211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24381513_24381680
60718	chr3	+	2657	1	Antisense	novelGene_ENSMUSG00000074653.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTCTTGGCTTTTTGTTTT	4940	False	NA	NA	False	NA	NA	NA	30751273	30753930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_30751300_30753900
60719	chr1	+	1081	1	ISM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	29140	3815	9440	3719	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTTTTCCATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	59753307	59754388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_59753300_59754400
60721	chrX	-	2113	9	NNC	ENSMUSG00000087396.8	novel	3369	9	NA	NA	53	-210	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1.6583123951777	8	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGACGAAATGCCAGTTC	NA	False	NA	NA	False	NA	NA	NA	74808252	74770184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74771125_74774625_74774789_74779698_74779862_74785421_74785585_74790282_74790446_74795130_74795294_74795636_74795711_74798971_74799135_74808131
60722	chr2	-	1715	1	NIC	ENSMUSG00000027488.13	novel	2125	8	NA	NA	3328	-3609	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACTAGCAAAGCTGCTGA	NA	False	NA	NA	False	NA	NA	NA	154246572	154244857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154244900_154246600
60724	chr17	-	1059	4	FSM	ENSMUSG00000024248.15	ENSMUST00000167741.9	1129	4	76	-6	76	6	multi-exon	FALSE	canonical	0	0	junction_1	605.058858477605	54	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTTAGTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	83821683	83809356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_83810167_83811359_83811429_83811528_83811658_83821632
60725	chr1	-	1407	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	34	-758	8	758	multi-exon	FALSE	canonical	3	315	junction_1	0.5	1651	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCTCGATTTCCCTTTG	NA	False	NA	NA	False	NA	NA	NA	24044703	24034261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24035442_24042237_24042388_24044626
60728	chr14	-	1821	2	ISM	ENSMUSG00000021835.16	ENSMUST00000100676.3	1633	3	4066	-45	820	45	3prime_fragment	FALSE	canonical	3	38	junction_1	0	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCCTAAACAACTCA	NA	False	NA	NA	False	NA	NA	NA	46623941	46621118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_46622170_46623171
60730	chr14	-	2450	1	ISM	ENSMUSG00000021738.6	ENSMUST00000022257.4	6853	12	92278	84	8925	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	21	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTATAAGAAAAAGTTGT	3159	False	NA	NA	False	NA	NA	NA	8364994	8362544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_8362500_8365000
60732	chr1	-	525	4	FSM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	64	2252	-21	47	multi-exon	FALSE	canonical	3	2337	junction_3	156.5907617539	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTAAGAGTCCACTATGA	NA	False	NA	NA	False	NA	NA	NA	180641133	180630648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035
60733	chr19	-	1448	7	NNC	ENSMUSG00000055044.13	novel	2571	7	NA	NA	99	116	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	78.3127632566294	4	23	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCAATGTGTGACCTCT	NA	False	NA	NA	False	NA	NA	NA	40259961	40210690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240303_40240506_40259789
60734	chr7	+	690	6	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7156.35154530575	11	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659750_12660322_12660422_12660498
60736	chr3	-	1629	8	FSM	ENSMUSG00000039795.15	ENSMUST00000184644.8	954	8	2	-677	-1	-50	multi-exon	FALSE	canonical	3	11	junction_7	262.492293375696	8	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAATAAACTGATTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	10416375	10405064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416228
60737	chr1	-	927	4	NNC	ENSMUSG00000099343.2	novel	633	2	NA	NA	15401	57	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	32.2937902527543	205	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAAATTACACGTTTCGT	NA	False	NA	NA	False	NA	NA	NA	21326416	21320525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_21321037_21323622_21323669_21324392_21324563_21326216
60738	chr17	-	492	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	-1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2408.53180174147	4	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGAAGTTGGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	27854215	27849446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849481_27850173_27850218_27851276_27851331_27853045_27853218_27853299_27853450_27854177
60739	chr5	-	1143	6	FSM	ENSMUSG00000029235.15	ENSMUST00000031145.7	1181	6	23	15	0	-15	multi-exon	FALSE	canonical	3	53	junction_1	18.0554700852678	458	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAAGACATTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	76478980	76459988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76472839_76472961_76478859
60740	chr5	+	1054	1	Intergenic	novelGene_839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTCCAGCAGCAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	116373619	116374673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_116373600_116374700
60743	chr5	+	1108	1	ISM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	48656	6	48460	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAAGTTTTTCATAATTC	NA	False	NA	NA	False	NA	NA	NA	110373222	110374330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_110373200_110374300
60744	chr3	-	1577	10	FSM	ENSMUSG00000027932.15	ENSMUST00000029541.12	2259	10	684	-2	-262	2	multi-exon	FALSE	canonical	3	73	junction_6	21.4101625806157	191	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCCATCTTCGAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	90296550	90292543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996_90296207_90296478
60745	chr8	-	1224	7	ISM	ENSMUSG00000053693.17	ENSMUST00000109741.9	4872	26	19111	1516	5872	-1511	internal_fragment	FALSE	canonical	2	5	junction_5	2.76887462097269	1	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCGTCCAGCGACAGTCTT	NA	False	NA	NA	False	NA	NA	NA	85644871	85640047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681
60746	chr11	+	1430	1	ISM	ENSMUSG00000025571.14	ENSMUST00000026658.13	8724	22	107705	14	12763	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	25	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTATTGATGTAATTGC	NA	False	NA	NA	False	NA	NA	NA	117652819	117654249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_117652800_117654200
60747	chr10	+	1583	5	NIC	ENSMUSG00000006732.15	novel	1791	6	NA	NA	10	-8	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	167.502798484085	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTATGTGTTTGAGTG	NA	False	NA	NA	False	NA	NA	NA	126877836	126882226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126877940_126880335_126880521_126880624_126880739_126880894_126880997_126881147
60748	chr15	-	1635	2	ISM	ENSMUSG00000016637.8	ENSMUST00000230844.2	760	7	7895	0	1358	0	intron_retention	FALSE	canonical	3	305	junction_1	0	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	78049778	78043662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_78043909_78048389
60749	chr5	+	1067	7	Antisense	novelGene_ENSMUSG00002074913.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCGAAACTCGCTGCGTCA	NA	False	NA	NA	False	NA	NA	NA	25008257	25047586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_25008755_25011996_25012082_25013296_25013436_25018797_25018864_25022757_25022829_25047181_25047306_25047501
60750	chr11	-	1203	4	NIC	ENSMUSG00000000384.16	novel	853	4	NA	NA	237	6	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	242.699173646902	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGGCCTATTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	6575785	6573193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_6573462_6573815_6574284_6575148_6575214_6575383
60752	chr14	+	530	4	ISM	ENSMUSG00000053453.10	ENSMUST00000225559.2	454	6	-34	1766	-34	-127	5prime_fragment	FALSE	canonical	3	658	junction_2	39.8525058462102	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCGGGTCACTCCCTA	NA	False	NA	NA	False	NA	NA	NA	8515105	8518695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_8515225_8516224_8516353_8516600_8516688_8518499
60754	chr15	-	2713	2	ISM	ENSMUSG00000036158.13	ENSMUST00000109255.3	4144	8	16040	1	16040	-1	3prime_fragment	FALSE	canonical	2	4	junction_1	0	9	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTTCCGAGTCCGCATC	NA	False	NA	NA	False	NA	NA	NA	93401364	93396995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_93399185_93400840
60755	chr2	+	2757	10	NNC	ENSMUSG00000036792.13	novel	713	8	NA	NA	46	-3777	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4.2889464590264	1	114	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCACCTCCCCCTCCTCC	6272	False	NA	NA	False	NA	NA	NA	48839580	49146793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_48840188_48908265_48908338_48976601_48976665_48989642_48989822_49059920_49060026_49121683_49121861_49135553_49136219_49140150_49140254_49141254_49141436_49146188
60757	chr2	-	1734	4	Antisense	novelGene_ENSMUSG00000027575.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGCTCAGATCCCCCCA	6755	False	NA	NA	False	NA	NA	NA	180615044	180609076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180609607_180612842_180612908_180613366_180613947_180614485
60758	chr1	-	1019	6	NIC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	14	junction_3	159.612781443091	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACAATGGTGCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	44141593	44125780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44139007_44139162_44141059_44141118_44141487
60759	chr14	-	2191	11	ISM	ENSMUSG00000021816.12	ENSMUST00000161445.8	3298	14	14723	7810	-7781	-7	internal_fragment	FALSE	canonical	3	105	junction_2	33.4640105187648	81	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCATTCCTGTAATCTG	NA	False	NA	NA	False	NA	NA	NA	20581892	20557745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573743_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727
60760	chr10	-	974	6	NNC	ENSMUSG00000001783.4	novel	2009	12	NA	NA	27	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	583.430201480863	21	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAATGTTTCCTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	85793660	85774509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779097_85791598_85791662_85793478
60761	chr9	-	1130	6	ISM	ENSMUSG00000032580.13	ENSMUST00000194801.6	2691	20	15575	4	-702	0	3prime_fragment	FALSE	canonical	3	572	junction_5	8.84533775499839	56	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	107622187	107617698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133
60762	chr2	+	2101	13	Intergenic	novelGene_2717	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	89	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGATCATTCTCCAAGATC	NA	False	NA	NA	False	NA	NA	NA	139675401	139899342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_139676368_139699621_139699698_139725691_139725800_139752450_139752568_139789078_139789136_139793378_139793498_139819525_139819633_139827047_139827129_139837992_139838077_139850617_139850726_139884006_139884085_139890163_139890227_139899205
60763	chr10	-	1124	6	NNC	ENSMUSG00000000296.9	novel	1103	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	223.49496638627	44	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTGGATCTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	31321810	31208372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31257147_31257209_31321707
60764	chr4	-	939	7	NNC	ENSMUSG00000078552.11	novel	864	7	NA	NA	720	7625	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTTCTACTTCCGGGAG	NA	False	NA	NA	False	NA	NA	NA	129502321	129494498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129494524_129494774_129494926_129495197_129495415_129495983_129496052_129500876_129500971_129501246_129501304_129501994
60765	chr4	-	1176	1	NIC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	13946	1250	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTTTATTCACGTGGT	NA	False	NA	NA	False	NA	NA	NA	34669423	34668247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34668200_34669400
60766	chr7	-	1440	12	NNC	ENSMUSG00000001794.14	novel	1600	12	NA	NA	-18	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	605.878789394394	1	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGAGAAAATAAACTCTC	NA	False	NA	NA	False	NA	NA	NA	29894491	29886449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29890723_29890799_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
60767	chr11	+	1799	2	FSM	ENSMUSG00000048497.12	ENSMUST00000062860.5	343	2	30	-1486	30	-9	multi-exon	FALSE	canonical	3	15	junction_1	0	113	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCAGTTGACTGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	62539519	62557171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62539643_62555495
60768	chr12	-	1526	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	52	0	52	0	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	484	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	False	NA	NA	False	NA	NA	NA	55539380	55536194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
60769	chr13	+	1603	16	FSM	ENSMUSG00000003992.16	ENSMUST00000042122.15	1633	16	39	-9	3	9	multi-exon	FALSE	canonical	3	11	junction_4	12.5973542195706	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGTGTCTGAAGCAAG	2801	False	NA	NA	False	NA	NA	NA	91609248	91849364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
60770	chr9	+	1216	4	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	10	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	373.257135081017	1	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTGTTTCCTAGTGACT	635	False	NA	NA	False	NA	NA	NA	45281749	45307439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301931_45301971_45306359
60771	chr16	-	2169	1	NIC	ENSMUSG00000060657.9	novel	7751	27	NA	NA	5601	-10531	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGAAACTGTGGCTTGG	NA	False	NA	NA	False	NA	NA	NA	13971530	13969361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_13969400_13971500
60772	chr1	-	738	4	NNC	ENSMUSG00000026095.16	novel	2442	6	NA	NA	3918	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	260.46283590733	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGTGTAGTAGTTTCA	NA	False	NA	NA	False	NA	NA	NA	53386516	53383800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53384139_53385738_53385921_53386173_53386232_53386356
60773	chr9	+	1509	9	NNC	ENSMUSG00000023277.14	novel	1596	9	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	116.643420303076	4	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	106080362	106092588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092057
60774	chr2	+	3474	1	NIC	ENSMUSG00000027655.15	novel	3212	21	NA	NA	-3314	-2009	mono-exon	FALSE	NA	NA	NA	NA	NA	3	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCCCAAACCCATTGTTT	NA	False	NA	NA	False	NA	NA	NA	158666023	158669497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_158666000_158669500
60775	chr11	+	3879	22	Antisense	novelGene_ENSMUSG00000085078.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	50	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTCCTCAGAGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	80374293	80670717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_80375209_80448259_80448419_80477673_80477789_80483614_80483718_80484564_80484710_80492408_80492637_80528702_80528904_80531040_80531211_80548217_80548352_80553866_80553942_80557400_80557466_80561672_80561846_80565439_80565555_80565642_80565788_80566875_80567080_80567646_80567765_80570845_80570942_80573207_80573262_80575150_80575313_80576670_80576769_80583705_80583916_80670523
60776	chr4	+	1744	14	FSM	ENSMUSG00000029049.15	ENSMUST00000030915.11	1659	14	-92	7	-92	-7	multi-exon	TRUE	canonical	3	16	junction_9	6.41927570616156	86	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACCCTGAGTAGCACCTT	NA	False	NA	NA	False	NA	NA	NA	155170941	155229955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155171139_155171877_155171950_155173942_155174042_155175339_155175451_155176725_155176817_155177518_155177607_155185722_155185820_155186546_155186658_155195384_155195509_155195873_155196047_155213135_155213258_155213339_155213423_155226858_155226903_155229623
60777	chr17	+	1179	1	Genic_Genomic	ENSMUSG00000038880.14	novel	NA	NA	NA	NA	-5	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1263	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	NA	False	NA	NA	NA	25114084	25115263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_25114100_25115300
60778	chr8	-	1747	12	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-14	4	combination_of_known_junctions	FALSE	canonical	1	2	junction_7	66.7891711913672	1	75	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578654	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
60779	chr15	+	1599	1	ISM	ENSMUSG00000035900.19	ENSMUST00000088931.10	4115	19	78323	18	61285	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGCTGAGTCTGAGGAA	NA	False	NA	NA	False	NA	NA	NA	86020218	86021817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_86020200_86021800
60780	chr1	+	1772	1	Intergenic	novelGene_390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGTAATCCTTACAGAGA	NA	False	NA	NA	False	NA	NA	NA	75286380	75288152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_75286400_75288200
60781	chr4	-	2750	2	FSM	ENSMUSG00000052117.6	ENSMUST00000063816.6	2830	2	63	17	63	-17	multi-exon	FALSE	canonical	3	12	junction_1	0	30	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTTTTGGTCCTAAT	-1	True	NA	NA	False	NA	NA	NA	57916234	57908499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_57910612_57915596
60782	chr7	+	274	1	ISM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	277308	3260	18297	-3260	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATAAACTAATGCTCCAGA	NA	False	NA	NA	False	NA	NA	NA	67879882	67880156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_67879900_67880200
60783	chr7	+	1924	1	ISM	ENSMUSG00000005533.11	ENSMUST00000005671.10	11409	21	278904	14	19893	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	14	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTGTATGCACCTTTG	NA	False	NA	NA	False	NA	NA	NA	67881478	67883402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_67881500_67883400
60784	chr2	+	3367	17	NIC	ENSMUSG00000040812.15	novel	3448	17	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.242061459137964	5	48	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTCCTTGATTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	90613918	90646572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90614018_90614405_90614470_90619276_90619412_90620122_90620177_90621803_90621990_90624216_90624325_90627779_90627934_90631380_90632164_90633385_90633543_90636142_90636270_90637642_90637744_90638321_90638453_90640291_90640362_90640984_90641108_90641600_90641709_90643618_90643697_90645683
60786	chr4	+	637	6	NNC	ENSMUSG00000028691.13	novel	636	5	NA	NA	-10482	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9266.17147693696	1	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTAAGCAGAAGTGAGCAC	NA	False	NA	NA	False	NA	NA	NA	116532258	116556437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116532301_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
60787	chr17	+	2111	2	Antisense	novelGene_ENSMUSG00000060475.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCTCTGAACCTGTAAGT	NA	False	NA	NA	False	NA	NA	NA	13211580	13214164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_13213488_13213960
60789	chr11	-	2626	7	ISM	ENSMUSG00000004798.15	ENSMUST00000004920.4	5743	27	63618	388	12566	-388	3prime_fragment	FALSE	canonical	3	20	junction_5	3.09120616516523	8	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCTTCTGTAATTTTTA	NA	False	NA	NA	False	NA	NA	NA	61682281	61666862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_61668666_61670499_61670636_61672417_61672576_61672831_61672951_61674362_61674542_61678254_61678464_61682259
60790	chr2	-	1745	8	NNC	ENSMUSG00000027496.16	novel	1862	9	NA	NA	1474	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	463.338021803715	1	100	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATGTATGCAAACTTG	NA	False	NA	NA	False	NA	NA	NA	172210952	172198159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206365_172206417_172208841_172209092_172210905
60791	chr17	+	1598	12	NNC	ENSMUSG00000024030.8	novel	5832	15	NA	NA	0	4040	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	14.1998719584496	1	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTGTGAGTGTCCCGTC	NA	False	NA	NA	False	NA	NA	NA	31276700	31328619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_31276831_31283358_31283603_31283727_31283851_31311282_31311401_31313619_31313753_31317226_31317278_31323010_31323157_31324490_31324615_31325033_31325149_31327279_31327429_31327588_31327691_31328456
60792	chr9	+	1281	2	Intergenic	novelGene_1122	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	39	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCATCTTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	86607220	86609701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_86607367_86608566
60793	chr7	-	863	8	NNC	ENSMUSG00000030603.17	novel	1440	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_5	822.24290070216	53	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	NA	False	NA	NA	NA	27749474	27741131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742282_27748271_27748405_27748528_27748628_27749407
60794	chr12	+	3251	24	FSM	ENSMUSG00000034145.15	ENSMUST00000146292.8	3455	24	207	-3	-65	0	multi-exon	TRUE	canonical	1	1	junction_6	2.14678728619626	9	22	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGAATCCTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	87073272	87136815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87073365_87099599_87099663_87103161_87103372_87103896_87103977_87104404_87104487_87108294_87108333_87112246_87112390_87113669_87113719_87115896_87116006_87118041_87118116_87118680_87118762_87118871_87118996_87119631_87119766_87121851_87121975_87122384_87122539_87123172_87123280_87123965_87124053_87124666_87124733_87128571_87128735_87128972_87129079_87129463_87129632_87131235_87131346_87133128_87133201_87135999
60795	chr7	-	1726	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205634.2	637	2	21	-1110	2	-3	multi-exon	FALSE	canonical	1	1	junction_1	0	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTGTTGATGGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	41148830	41139273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_41140887_41148717
60796	chr13	-	1449	4	Fusion	ENSMUSG00000094499.4_ENSMUSG00000074832.12	novel	515	5	NA	NA	-17	-17302	multi-exon	FALSE	canonical	0	0	junction_3	13.5236418500672	70	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	66589196	66516514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66517022_66518268_66518952_66519399_66519543_66589080
60797	chr2	-	1123	9	FSM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	40	75	40	0	multi-exon	FALSE	canonical	0	0	junction_6	130.411607995608	1500	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTTGTTGTTTGTAGA	NA	False	NA	NA	False	NA	NA	NA	130506539	130495954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130506394
60799	chr15	+	2789	16	ISM	ENSMUSG00000022324.16	ENSMUST00000163455.9	3577	19	2	3529	1	-3529	5prime_fragment	TRUE	canonical	0	0	junction_1	1.08730042868667	6	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGCATGGGACCTGCCA	52	False	NA	NA	False	NA	NA	NA	34306827	34432855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_34307055_34316636_34316802_34345136_34345707_34355708_34355832_34378800_34378924_34388869_34388993_34399195_34399319_34402980_34403104_34409898_34410022_34410259_34410383_34422487_34422611_34423839_34423963_34426308_34426432_34428579_34428994_34431617_34431771_34432825
60800	chr15	+	679	3	ISM	ENSMUSG00000022324.16	ENSMUST00000227759.2	3569	19	126412	-2	126412	2	3prime_fragment	FALSE	canonical	0	0	junction_2	0.5	1	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTGTTGAGTAAAATTC	NA	False	NA	NA	False	NA	NA	NA	34433242	34436386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_34433314_34433632_34433732_34435877
60802	chr16	-	2009	16	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	1573	7	NA	NA	7	-306	multi-exon	FALSE	canonical	1	1	junction_4	396.423925727105	1	111	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCATCACCACATGGCTTC	6273	False	NA	NA	False	NA	NA	NA	38370577	38319014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329264_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
60803	chr17	-	582	5	ISM	ENSMUSG00000024099.16	ENSMUST00000024909.15	927	9	12182	3	2900	-3	3prime_fragment	FALSE	canonical	3	4006	junction_3	48.8006147502263	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACATAAGCTTTATTCGG	NA	False	NA	NA	False	NA	NA	NA	66396308	66386438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226
60806	chr9	-	1059	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	18	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	1051	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	NA	False	NA	NA	NA	48391893	48379811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
60808	chr17	+	1121	3	ISM	ENSMUSG00000013766.12	ENSMUST00000172678.8	750	4	-36	-239	-7	-15	intron_retention	FALSE	canonical	3	186	junction_1	151	827	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGCTGTAAAAGTAGTTA	NA	False	NA	NA	False	NA	NA	NA	35295870	35297765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35295967_35296110_35296183_35296812
60810	chr9	-	587	2	Genic_Genomic	ENSMUSG00000061167.10	novel	615	1	NA	NA	-35	62	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTGACTGTAACATATT	NA	False	NA	NA	False	NA	NA	NA	22097552	22096840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_22097245_22097369
60811	chr16	-	1081	4	FSM	ENSMUSG00000022671.14	ENSMUST00000229680.2	1066	4	-12	-3	-12	0	multi-exon	FALSE	canonical	2	7	junction_2	282.609664063744	3416	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	15681186	15666306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15666594_15678561_15678635_15680261_15680408_15680611
60813	chr8	-	1053	5	NNC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_2	265.155025409665	5	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	70975743	70966045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70966819_70968044_70968092_70971090_70971168_70972586_70972712_70975712
60815	chr14	-	2130	2	NNC	ENSMUSG00000022114.6	novel	2087	2	NA	NA	-2119	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	76	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCTTGTTTTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	106136372	106129380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_106131228_106136089
60816	chr4	-	2008	11	NNC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	15	-9	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	163.065508308778	1	118	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACTTGAGAATCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	120682866	120614643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625289_120625412_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
60818	chr13	+	345	1	Intergenic	novelGene_1418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGGCATTTTCTCAACTA	NA	False	NA	NA	False	NA	NA	NA	65774737	65775082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65774700_65775100
60819	chr7	+	2421	2	NIC	ENSMUSG00000003865.17	novel	3678	16	NA	NA	6	-13136	intron_retention	FALSE	canonical	3	122	junction_1	0	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTCTAGAATTTTTAAGA	1066	False	NA	NA	False	NA	NA	NA	45084306	45088115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45086138_45087525
60821	chrX	+	2032	2	Genic_Genomic	ENSMUSG00000105993.2	novel	1834	1	NA	NA	-15	541	multi-exon	FALSE	canonical	2	5	junction_1	0	22	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTCCCTGAAAATCCTA	NA	False	NA	NA	False	NA	NA	NA	41578552	41580942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_41580411_41580768
60822	chr7	-	1123	1	NIC	ENSMUSG00000025492.7	novel	678	2	NA	NA	59	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTATGACTGCTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	140590624	140589501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140589500_140590600
60823	chr5	-	2571	5	ISM	ENSMUSG00000057614.7	ENSMUST00000074694.7	3135	8	68803	7	68803	-7	3prime_fragment	FALSE	canonical	3	135	junction_3	11.6913429510899	31	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTACAAACCTATTGAC	NA	False	NA	NA	False	NA	NA	NA	18496550	18470139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_18472208_18476823_18476978_18478443_18478574_18494521_18494651_18496460
60824	chrX	+	2553	13	FSM	ENSMUSG00000025592.18	ENSMUST00000067219.5	2520	13	-33	0	-28	0	multi-exon	FALSE	canonical	0	0	junction_1	3.65148371670111	11	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTTCTCTGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	112207920	112745590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_112208633_112362154_112362194_112465944_112466058_112549590_112549723_112614405_112614565_112633941_112634115_112659967_112660104_112662516_112662601_112724539_112724689_112724813_112724962_112727319_112727467_112729645_112729712_112745095
60825	chr2	-	520	1	Intergenic	novelGene_2623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTACAGAGATCAAAGGG	NA	False	NA	NA	False	NA	NA	NA	48814260	48813740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_48813700_48814300
60826	chr9	+	1286	7	NIC	ENSMUSG00000035443.11	novel	918	8	NA	NA	-9	-2	intron_retention	FALSE	canonical	3	218	junction_6	149.601043519831	107	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAGGTTGGAAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	26910996	26918624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26918248_26918453
60827	chr19	-	1538	10	NNC	ENSMUSG00000037916.15	novel	1661	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	454.613497488543	1	91	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTCTGGAACTTTGC	6541	False	NA	NA	False	NA	NA	NA	4062691	4057501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058804_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
60828	chr17	+	2563	16	NNC	ENSMUSG00000024013.16	novel	2640	16	NA	NA	-10	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0.928559218478941	11	26	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATAACTGGGACTGTTGT	NA	False	NA	NA	False	NA	NA	NA	29579936	29598502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29580132_29582684_29582917_29583884_29583966_29584435_29584585_29585944_29586102_29586244_29586384_29586894_29586954_29587160_29587305_29588218_29588312_29592191_29592272_29592357_29592389_29592984_29593078_29593820_29593953_29595801_29595949_29597286_29597434_29597818
60829	chr3	+	1364	5	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	7684	2615	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCCTGCCGCGAGGGTCG	NA	False	NA	1	True	NA	NA	NA	90395669	90398301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90395881_90396076_90396903_90397462_90397580_90397854_90397902_90398138
60831	chr10	-	1085	2	NIC	ENSMUSG00000112261.2	novel	660	3	NA	NA	24	561	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	0	53	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTTCAGAAACCCTAAG	1577	False	NA	NA	False	NA	NA	NA	95297062	95280616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_95281620_95296980
60833	chr18	-	1950	13	NNC	ENSMUSG00000001380.8	novel	1989	13	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	256.099427306401	1	89	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	NA	False	NA	NA	NA	36916221	36899580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903465_36903598_36903857_36903952_36904148_36904248_36904380_36904468_36905295_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
60834	chr4	-	1143	1	Intergenic	novelGene_2149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAGAAATCCAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	147855109	147853966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147854000_147855100
60836	chr4	+	1638	8	ISM	ENSMUSG00000062064.7	ENSMUST00000059893.8	1578	12	8475	-541	-381	541	3prime_fragment	FALSE	canonical	3	6	junction_1	4.94046184736874	46	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTATTTGGGCTCCGGTT	981	False	NA	NA	False	NA	NA	NA	150241903	150253480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_150242048_150242538_150242665_150242931_150243123_150244475_150244587_150247654_150247757_150249565_150249642_150250811_150250940_150252720
60838	chr8	+	4174	14	NIC	ENSMUSG00000025812.19	novel	4214	14	NA	NA	20	-2	combination_of_known_junctions	FALSE	canonical	3	20	junction_13	37.2228217836647	54	71	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCACTTTGTATGTATT	NA	False	NA	NA	False	NA	NA	NA	128026112	128129056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_128026285_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128126878
60839	chr2	+	681	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	41	0	-9	0	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	5610	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTCCTGGATTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	25447899	25452094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
60840	chr14	+	3758	9	FSM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	28	8	-6	-8	multi-exon	FALSE	canonical	3	27	junction_2	7.61474720525902	37	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAGATGTTGCTGATAA	846	False	NA	NA	False	NA	NA	NA	65903879	66002267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_65904196_65908005_65908124_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
60841	chr4	+	2358	1	Intergenic	novelGene_1836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGCCCATATAATGTTAC	8030	False	NA	NA	False	NA	NA	NA	44764721	44767079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_44764700_44767100
60842	chr3	+	871	1	FSM	ENSMUSG00000105789.2	ENSMUST00000200321.2	985	1	139	-25	-2	25	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGTCTACAGAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	130524247	130525118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_130524200_130525100
60843	chr16	-	2395	11	NIC	ENSMUSG00000022537.19	novel	4331	12	NA	NA	-6	-8	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	5.46260011349907	40	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTATCTGCTCTGGGCTCT	NA	False	NA	NA	False	NA	NA	NA	30369363	30332518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_30333641_30337117_30337151_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
60845	chr17	-	982	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	-6	-1	3	0	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	6790	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	NA	False	NA	NA	NA	31877735	31866054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
60846	chr13	-	289	1	NIC	ENSMUSG00000085024.2	novel	623	4	NA	NA	2413	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTCCAACAAATGAAAGT	9972	False	NA	NA	False	NA	NA	NA	23612583	23612294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_23612300_23612600
60847	chr11	+	1936	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	-95	19	8	-5	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	66	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATGCTTTGGTGCTACA	7681	False	NA	NA	False	NA	NA	NA	58197902	58205434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
60848	chr6	-	3466	1	Intergenic	novelGene_4143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGCAGAACTTTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	37806460	37802994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_37803000_37806500
60849	chr19	-	1854	15	NNC	ENSMUSG00000024906.11	novel	2070	16	NA	NA	0	-4	intron_retention	FALSE	canonical	0	0	junction_2	35.3997578684213	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGGAAGCAATGCCAAGG	NA	False	NA	NA	False	NA	NA	NA	5538313	5532871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5533058_5533135_5533220_5533544_5533694_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
60850	chr1	-	1991	11	FSM	ENSMUSG00000010609.16	ENSMUST00000111108.10	1997	11	6	0	6	0	multi-exon	FALSE	canonical	2	16	junction_10	6.79411510058521	62	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTGTTTGGCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	180083859	180054568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180055294_180056407_180056527_180056950_180057053_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178_180073323_180083787
60851	chr17	+	800	1	Intergenic	novelGene_10	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTCTGATTCAGTTAGA	NA	False	NA	NA	False	NA	NA	NA	9942784	9943584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_9942800_9943600
60853	chr5	-	1697	8	NNC	ENSMUSG00000029311.17	novel	1825	7	NA	NA	-31	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.0572763655761	89	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTATCTGTCTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	104169735	104137637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_104138114_104138181_104138461_104140683_104140801_104151037_104151176_104156444_104156552_104157660_104157793_104166039_104166148_104169395
60854	chr4	-	2741	2	Intergenic	novelGene_1799	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	8	57	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACCTCATGTGTTTGCA	27	False	NA	NA	False	NA	NA	NA	11191196	11175985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_11178675_11191144
60855	chr5	+	1326	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	152	10	53	-10	multi-exon	FALSE	canonical	3	305	junction_1	16.2468207250979	316	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGGTGACTTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	104194886	104213235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
60856	chr1	+	2958	13	Genic_Genomic	ENSMUSG00000100763.2	novel	535	3	NA	NA	-6921	99242	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	170	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCACGGCCTACTTCGCTG	NA	False	NA	NA	False	NA	NA	NA	53228350	53336096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_53228660_53231260_53231421_53234085_53234218_53235981_53236458_53245714_53246571_53246734_53246872_53247112_53247239_53255385_53255494_53295777_53295954_53306988_53307088_53314226_53314406_53321102_53321248_53336041
60857	chr7	-	1241	10	NIC	ENSMUSG00000030760.15	novel	1440	12	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	71.9891967203722	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTACTGGCAAAATACC	NA	False	NA	NA	False	NA	NA	NA	97958746	97865649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_97866098_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
60858	chr6	+	1403	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	97	-58	97	58	multi-exon	FALSE	canonical	3	281	junction_2	50	1027	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATATTTGAATGGTTTAGA	8545	False	NA	NA	False	NA	NA	NA	97187746	97210334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_97187958_97206497_97206716_97209360
60859	chr2	-	1438	12	FSM	ENSMUSG00000017697.4	ENSMUST00000017841.4	1688	12	20	230	20	-230	multi-exon	FALSE	canonical	3	45	junction_1	12.1526108476007	221	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGCAGCACATGGTGAAT	NA	False	NA	NA	False	NA	NA	NA	163592139	163568733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_163568969_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
60860	chr5	-	3119	1	FSM	ENSMUSG00000105059.2	ENSMUST00000199981.2	1372	1	-2149	402	-2149	-402	mono-exon	FALSE	NA	NA	NA	NA	NA	6	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCTCCCCTCCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	128677169	128674050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_128674000_128677200
60861	chr8	+	1575	5	FSM	ENSMUSG00000003824.13	ENSMUST00000136026.8	1686	5	98	13	16	-13	multi-exon	FALSE	canonical	3	1047	junction_2	374.154045815357	3797	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGTGATACAAATAATGTG	NA	False	NA	NA	False	NA	NA	NA	85598837	85614837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763
60862	chr7	-	1978	14	NIC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	6	0	combination_of_known_junctions	TRUE	canonical	3	82	junction_7	38.5657050949086	116	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2792	False	NA	NA	False	NA	NA	NA	18644308	18624807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
60863	chr3	-	2203	5	NNC	ENSMUSG00000039286.13	novel	5631	9	NA	NA	67307	-35144	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	41.7754413501521	3	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATGCAAGAGTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	27697240	27590727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697095
60864	chr7	+	1689	11	Intergenic	novelGene_2886	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	63	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTACGCGGTTACTCTT	3336	False	NA	NA	False	NA	NA	NA	18990857	19005714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_18991125_18991170_18991682_18991792_18991847_18992728_18992814_18992893_18992949_18993317_18993393_18994505_18994607_18994748_18994800_18998454_18998493_18998575_18998745_19005431
60865	chr19	-	1846	4	ISM	ENSMUSG00000042401.9	ENSMUST00000238290.2	2164	15	133685	14770	-10146	-22	internal_fragment	FALSE	canonical	3	64	junction_3	5.73488351136175	29	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCTTAAGTTTGAACTT	NA	False	NA	NA	False	NA	NA	NA	42286539	42271495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_42272706_42275611_42275655_42276291_42276438_42286092
60866	chrX	+	2025	2	ISM	ENSMUSG00000096056.2	ENSMUST00000113671.3	5560	11	-1648	24629	-1648	-24629	5prime_fragment	FALSE	canonical	3	102	junction_1	0	4	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCCAGCCCCAGGTAGCT	NA	False	NA	NA	False	NA	NA	NA	100337796	100340325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_100339695_100340198
60867	chr5	+	1501	12	NNC	ENSMUSG00000029199.12	novel	1668	11	NA	NA	9	-62	intron_retention	FALSE	non_canonical	0	0	junction_8	110.076307116608	204	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGATCTTATAAATTACA	6942	False	NA	NA	False	NA	NA	NA	65548895	65566488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560009_65560057_65560100_65561510_65561582_65562672_65562785_65566077
60868	chr1	+	2659	1	ISM	ENSMUSG00000038323.4	ENSMUST00000042734.3	3008	2	5133	12	5113	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	43	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCACAGAAATGTTATTT	NA	False	NA	NA	False	NA	NA	NA	57421911	57424570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_57421900_57424600
60869	chr5	-	1069	1	Antisense	novelGene_ENSMUSG00000029635.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACTAAAATATTAGCAGG	NA	False	NA	NA	False	NA	NA	NA	146221530	146220461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_146220500_146221500
60871	chr5	-	2878	6	FSM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	51	857	51	-857	multi-exon	FALSE	canonical	3	39	junction_5	18.2756668824971	84	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAACCCTATATTACAAAG	NA	False	NA	NA	False	NA	NA	NA	73805082	73790948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73805017
60873	chr10	+	1161	9	ISM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	1108	0	1080	0	3prime_fragment	FALSE	canonical	3	491	junction_2	63.2672901268894	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	NA	False	NA	NA	NA	87984046	88014250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
60874	chr14	+	2877	6	ISM	ENSMUSG00000033060.17	ENSMUST00000159314.8	5774	27	78868	-14	439	-9	intron_retention	FALSE	canonical	3	29	junction_5	2.78567765543682	21	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTCTTTATTGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	102156951	102172137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_102157088_102157924_102157991_102159532_102159586_102163531_102163746_102166611_102166888_102170005
60875	chr17	+	876	1	Intergenic	novelGene_36	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAATCTCTGGAGTATAG	NA	False	NA	NA	False	NA	NA	NA	17314316	17315192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17314300_17315200
60876	chr15	+	1120	5	NIC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	5559.76469825837	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	103148880	103153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_103148956_103149506_103149624_103152051_103152208_103152385_103152456_103152682
60877	chr10	+	2381	1	NIC	ENSMUSG00000001785.14	novel	697	7	NA	NA	378	-3910	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTTCCTCTCTTTTACT	NA	False	NA	NA	False	NA	NA	NA	85708147	85710528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_85708100_85710500
60878	chr6	+	2388	14	NIC	ENSMUSG00000030347.7	novel	2501	14	NA	NA	-21	-2	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	30.9083393890222	6	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTATAAATTTCATGTGAAA	NA	False	NA	NA	False	NA	NA	NA	126916970	126952575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_126917274_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
60879	chr17	+	1525	12	NNC	ENSMUSG00000050088.10	novel	2506	2	NA	NA	1736	1562	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	294	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCCGGGTCGCTGTCGCA	NA	False	NA	28	True	NA	NA	NA	15165268	15181394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15165445_15166458_15166649_15166915_15167026_15170821_15170980_15172882_15173032_15174272_15174389_15175055_15175204_15175294_15175427_15176243_15176330_15176995_15177132_15179685_15179790_15181374
60880	chr4	-	1149	2	Genic_Genomic	ENSMUSG00000047281.4	novel	1613	1	NA	NA	361	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCGGTCTTCTTCAGTTA	NA	False	NA	NA	False	NA	NA	NA	133329118	133327871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_133328289_133328386
60882	chr7	+	1759	8	NIC	ENSMUSG00000025726.12	novel	2846	18	NA	NA	27087	-17	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	42.0490481340493	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACTTAAAACCTTTACTA	NA	False	NA	NA	False	NA	NA	NA	80791684	80820147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_80791793_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
60883	chr9	-	3191	1	Intergenic	novelGene_1031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCTGAGTCACCCCGA	NA	False	NA	NA	False	NA	NA	NA	52717639	52714448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_52714400_52717600
60884	chr16	+	1763	8	NIC	ENSMUSG00000022701.19	novel	3779	17	NA	NA	-12	-7639	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	31.6769406892233	41	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATTTTCCCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	43710249	43752291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_43710402_43712515_43712555_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556
60885	chr5	+	2206	2	FSM	ENSMUSG00000104667.2	ENSMUST00000197982.2	2249	2	42	1	42	-1	multi-exon	FALSE	canonical	2	6	junction_1	0	12	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGTGCTCTGGAGCACC	NA	False	NA	NA	False	NA	NA	NA	30297979	30302683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_30298047_30300544
60887	chr1	+	893	7	NNC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	321.988310691898	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	NA	False	NA	NA	NA	134890297	134901900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134890348_134895464_134895637_134896978_134897049_134898987_134899094_134899689_134899738_134899843_134899928_134901537
60889	chr5	-	673	3	NNC	ENSMUSG00000037364.13	novel	476	4	NA	NA	-42	-146	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	368.5	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTTTTATCCCTTGGG	8215	False	NA	NA	False	NA	NA	NA	137305978	137301060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137301301_137305307_137305448_137305685
60891	chr7	-	2141	6	NIC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	-110	9	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	15.3310143173894	1	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCGTATCATGTGGATT	NA	False	NA	NA	False	NA	NA	NA	23998936	23990472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23997698_23997801_23998617
60892	chr7	+	1532	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	13	-5	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	38.180492401225	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGAGCCAGTGCCATGT	NA	False	NA	NA	False	NA	NA	NA	127172524	127182467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127172629_127173025_127173139_127176706_127176861_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
60893	chr10	+	2279	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	42	31	-15	-31	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	1	135	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATTCAATAATAAAGATGAA	NA	False	NA	NA	False	NA	NA	NA	44144395	44240256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
60894	chr4	+	853	4	NNC	ENSMUSG00000086290.10	novel	896	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	84.3893094861876	121	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	132035986	132038335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132036219_132037148_132037383_132037619_132037816_132038144
60895	chr11	-	2359	4	FSM	ENSMUSG00000057778.15	ENSMUST00000079681.6	2393	4	30	4	15	-4	multi-exon	FALSE	canonical	2	5	junction_3	4.02768199119819	35	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACATTGCTTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	72686652	72668061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72669779_72673473_72673661_72679902_72680044_72686338
60898	chr13	+	2520	4	NNC	ENSMUSG00000048603.9	novel	918	4	NA	NA	6	632	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.24264068711928	22	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAATTTGCGTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	98453582	98459175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_98454841_98455581_98455654_98457710_98458839_98459113
60899	chr9	-	658	2	Genic_Genomic	ENSMUSG00000061167.10	novel	615	1	NA	NA	-35	59	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTGACTGTAACAT	NA	False	NA	NA	False	NA	NA	NA	22097552	22096843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_22097055_22097105
60900	chr6	+	1759	3	FSM	ENSMUSG00000035104.15	ENSMUST00000042974.15	1773	3	9	5	9	-5	multi-exon	FALSE	canonical	3	34	junction_1	1.5	123	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCTTTTGCTTCGTGTCT	NA	False	NA	NA	False	NA	NA	NA	82018612	82070075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_82018883_82048035_82048224_82068774
60901	chr2	+	1407	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3600	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.0987313559674	109	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCCCGGTCATGAAAGT	NA	False	NA	NA	False	NA	NA	NA	151418141	151431922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151418236_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
60902	chr13	-	1427	9	NIC	ENSMUSG00000021376.12	novel	838	7	NA	NA	-23	478	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	49.6814854850376	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTTTAATGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	47196643	47175479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_47176200_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
60903	chr15	+	1058	5	NNC	ENSMUSG00000022587.15	novel	2068	5	NA	NA	-36	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	239.702419679068	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCCTGCTATGTCCTG	8351	False	NA	NA	False	NA	NA	NA	74827465	74831175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_74827567_74829625_74829727_74830117_74830238_74830341_74830983_74831080
60904	chr3	+	805	10	NNC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	16440	6269	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCGCCTGCGCAGCCC	NA	False	NA	-51	True	NA	NA	NA	54636098	54642456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54636309_54636611_54636690_54637184_54637307_54638495_54638593_54639401_54639448_54640120_54640166_54641077_54641150_54641520_54641594_54641719_54641754_54642428
60905	chr16	-	1131	4	NNC	ENSMUSG00000040681.17	novel	261	5	NA	NA	23	641	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3327.64451226389	1	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTATTTGGAAATGCCTGA	NA	False	NA	NA	False	NA	NA	NA	95928906	95922792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923599_95925913_95926046_95928352_95928404_95928764
60906	chr5	+	580	1	ISM	ENSMUSG00000002486.16	ENSMUST00000094441.11	2882	13	13988	0	2064	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGCTGTCACTGCTGC	6094	False	NA	NA	False	NA	NA	NA	114859808	114860388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_114859800_114860400
60907	chr7	-	1267	5	FSM	ENSMUSG00000040139.15	ENSMUST00000117404.8	699	5	-11	-557	10	-6	multi-exon	FALSE	canonical	3	25	junction_1	88.1373218336024	611	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGACAGCTGTCTGGCT	NA	False	NA	NA	False	NA	NA	NA	137012475	136977308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_136978081_136978683_136978847_136989099_136989163_136989268_136989431_137012368
60908	chr12	+	1224	6	ISM	ENSMUSG00000021144.15	ENSMUST00000109723.8	2790	20	33377	0	107	0	3prime_fragment	FALSE	canonical	3	473	junction_3	35.9277051869445	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCCCTTCTGCGTCTTT	NA	False	NA	NA	False	NA	NA	NA	113095274	113100826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
60909	chr5	+	1257	4	ISM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	15	5	-8	0	intron_retention	FALSE	canonical	3	507	junction_1	53.5806764504601	1252	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGAGTTCCTGTTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	124254176	124256254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892
60910	chr12	+	741	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222022.2	485	3	-45	-211	2	0	multi-exon	FALSE	canonical	3	134	junction_2	92.5	57	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	84820053	84821862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84820146_84820348_84820452_84821316
60912	chr2	+	2715	19	NNC	ENSMUSG00000027380.11	novel	531	6	NA	NA	-398	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.78797642971795	9	52	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACACAGGCGGAAATGAA	NA	False	NA	NA	False	NA	NA	NA	127680397	127965797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127680529_127691112_127691210_127709202_127709287_127713181_127713269_127714029_127714129_127719663_127719779_127720676_127720764_127722345_127722419_127726325_127726459_127753349_127753385_127814451_127814569_127820592_127820747_127851996_127852087_127876732_127876843_127886263_127886376_127917766_127917855_127928278_127928350_127947596_127947699_127964867
60915	chr15	+	2370	9	FSM	ENSMUSG00000037617.13	ENSMUST00000227582.2	2388	9	15	3	15	-3	multi-exon	FALSE	canonical	3	39	junction_4	7	80	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTACTGTGAGTATGC	87	False	NA	NA	False	NA	NA	NA	36210622	36235753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
60918	chr5	+	2807	27	NNC	ENSMUSG00000037426.19	novel	3511	33	NA	NA	-9	78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	84.8727292922455	1	153	18	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCCCATTGAGCAGTAGC	2043	False	NA	NA	False	NA	NA	NA	33021094	33095613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33021166_33021353_33021660_33021926_33022044_33025317_33025406_33026164_33026212_33032625_33032713_33034413_33034493_33035971_33036022_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061122_33061256_33061618_33061681_33061811_33061881_33067791_33067871_33069552_33069590_33070443_33070565_33075268_33075485_33081502_33081706_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488
60919	chr2	-	1479	4	NIC	ENSMUSG00000017307.17	novel	1017	5	NA	NA	5	-2	intron_retention	FALSE	canonical	3	55	junction_3	137.239450110625	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTGACCTTTAATAG	8172	False	NA	NA	False	NA	NA	NA	164646796	164634689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_164634931_164636904_164637730_164641639_164641866_164646609
60921	chr1	-	976	8	ISM	ENSMUSG00000026620.12	ENSMUST00000027929.10	4221	18	73685	15276	73590	7452	internal_fragment	FALSE	canonical	3	45	junction_6	6.26620348556037	1	30	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAGAGCGAAGTCACAGC	NA	False	NA	NA	False	NA	NA	NA	184658082	184644261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_184644387_184644678_184644833_184646713_184646827_184648275_184648376_184651506_184651627_184651714_184651952_184653748_184653806_184658012
60922	chr1	-	2508	4	ISM	ENSMUSG00000026620.12	ENSMUST00000027929.10	4221	18	92362	5	92267	-5	3prime_fragment	FALSE	canonical	3	53	junction_3	6.37704215656966	16	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGAGCTGTGAATCACCTG	NA	False	NA	NA	False	NA	NA	NA	184639405	184628990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_184631076_184633005_184633051_184637599_184637852_184639279
60923	chr4	+	1870	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	193	70	193	-70	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	316	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCCTTCTCATGATGAGC	2	True	NA	NA	False	NA	NA	NA	8535836	8607708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
60924	chr13	+	2196	12	NNC	ENSMUSG00000038651.16	novel	2641	29	NA	NA	-2316	-517	intron_retention	FALSE	non_canonical	0	0	junction_2	10.6460717156708	1	113	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCCATTCTCTTTAGAAA	NA	False	NA	NA	False	NA	NA	NA	41299955	41327310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_41300150_41302269_41302333_41302410_41302490_41303953_41304003_41306165_41306311_41306906_41306957_41308994_41309122_41310909_41310994_41316547_41316622_41316769_41316843_41324954_41325022_41326119
60925	chr15	+	1190	2	ISM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	1054	2	715	-2	3prime_fragment	FALSE	canonical	3	1292	junction_1	0	2	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATGTGGGTTTTCAGT	5199	False	NA	NA	False	NA	NA	NA	80140438	80141740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_80140723_80140834
60926	chr13	-	1614	2	FSM	ENSMUSG00000042275.10	ENSMUST00000109226.5	1600	2	-19	5	-19	-5	multi-exon	FALSE	canonical	3	85	junction_1	0	183	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTATGTTTTCTAGTTCGA	NA	False	NA	NA	False	NA	NA	NA	115226741	115224895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_115225498_115225729
60927	chr14	-	944	7	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	10	-575	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1272.58539333647	2	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTAAAAGGCTTGTTTGT	1698	False	NA	NA	False	NA	NA	NA	19873882	19861993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19862306_19864576_19864674_19866264_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
60928	chr2	+	1330	6	NIC	ENSMUSG00000051154.12	novel	935	8	NA	NA	20	-3	intron_retention	FALSE	canonical	3	388	junction_2	19.7524682002022	62	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTCTGTTTGGAGTTTG	93	False	NA	NA	False	NA	NA	NA	18677266	18681038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_18677415_18678705_18678818_18678935_18679528_18679619_18679677_18679760_18679821_18680677
60929	chr5	+	2688	11	NNC	ENSMUSG00000029263.16	novel	4573	13	NA	NA	222	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	30.2458261583313	1	118	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTTTAGATTTAAATTAA	NA	False	NA	NA	False	NA	NA	NA	108460723	108496053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108460945_108461824_108462031_108465128_108465334_108466685_108466880_108467761_108467904_108474682_108474896_108479840_108480059_108480549_108480832_108483969_108484428_108486420_108486613_108495696
60931	chr19	+	1394	4	FSM	ENSMUSG00000024959.15	ENSMUST00000025910.13	1452	4	47	11	47	-1	multi-exon	FALSE	canonical	2	8	junction_1	43.6526695123626	342	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCGCCGCGCCTCTATC	8728	False	NA	NA	False	NA	NA	NA	6919275	6929256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6919809_6920234_6920415_6928007_6928199_6928766
60932	chr8	-	960	12	NNC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1177.96085890999	2	37	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84321054	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299550_84299854_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
60933	chr19	-	2681	18	NIC	ENSMUSG00000034371.10	novel	2437	18	NA	NA	0	-31	combination_of_known_junctions	FALSE	canonical	3	19	junction_17	12.7406930547585	54	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGAAAGAAAGTTAATAAAAT	9789	False	NA	NA	False	NA	NA	NA	10582748	10569594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582304
60934	chr13	+	1822	3	NNC	ENSMUSG00000048603.9	novel	1446	3	NA	NA	-192	632	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4.5	8	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAATTTGCGTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	98455021	98459175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_98455654_98457710_98458839_98459113
60936	chr5	+	1147	9	Antisense	novelGene_ENSMUSG00000025855.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	29	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGTGAGAGAAGAAAAGGAA	8002	False	NA	NA	False	NA	NA	NA	139004246	139094409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_139004586_139005809_139005888_139022781_139022921_139028193_139028253_139036413_139036566_139048300_139048355_139049009_139049073_139092375_139092470_139094240
60937	chr11	+	800	3	NNC	ENSMUSG00000000581.9	novel	2981	5	NA	NA	30	610	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	370	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTTGTATGTCCTGACT	7361	False	NA	NA	False	NA	NA	NA	17207623	17217234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_17207659_17212647_17212772_17216593
60938	chr16	+	2043	19	NNC	ENSMUSG00000038084.17	novel	3153	29	NA	NA	-1	1713	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	152.025308565529	1	111	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGACAGAACCCAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	29398208	29439238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426505_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430763_29433866_29433983_29435393_29435510_29436939_29437106_29439198
60940	chr8	+	731	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	11	3	11	-3	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	2625	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTGTGGTTCATT	NA	False	NA	NA	False	NA	NA	NA	121394971	121400943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
60941	chr3	-	2381	1	ISM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	117789	10	117789	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	88	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTTCCACTTGGGCCTT	NA	False	NA	NA	False	NA	NA	NA	57365460	57363079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_57363100_57365500
60944	chr11	-	1821	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	16	0	-6	0	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	2	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	258	False	NA	NA	False	NA	NA	NA	61652872	61620479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
60945	chr13	-	1579	10	NIC	ENSMUSG00000021432.16	novel	2216	10	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	3	16	junction_6	16.5021510008338	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGTGTTTTAATAGAAT	NA	False	NA	NA	False	NA	NA	NA	39144503	39116283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139796_39139913_39144407
60946	chr13	-	1336	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-1	-487	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTCCTAACGGTGT	NA	False	NA	NA	False	NA	NA	NA	34314338	34311217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311865_34312224_34312515_34312854_34312966_34313228_34313338_34314159
60949	chr16	-	1486	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	92	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.640311119463	1	56	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATTCACTGAGTTATT	3980	False	NA	NA	False	NA	NA	NA	18245262	18225633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18226057_18226294_18226342_18226525_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
60950	chr17	-	894	4	NNC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	2	-7	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	486.977982618881	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTGTGAACCCTTACTG	NA	False	NA	NA	False	NA	NA	NA	13134988	13130242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13130637_13132656_13132815_13134524_13134712_13134833
60952	chr12	-	2662	1	NIC	ENSMUSG00000020664.11	novel	2544	14	NA	NA	-1342	-115	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTTTTTATAGATCGATG	NA	False	NA	NA	False	NA	NA	NA	31393055	31390393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_31390400_31393100
60953	chrX	+	1039	8	NIC	ENSMUSG00000067768.13	novel	1077	9	NA	NA	6	1	combination_of_known_splicesites	FALSE	canonical	1	5	junction_2	114.714374666395	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	NA	NA	NA	72257961	72266057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72258064_72258379_72258463_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
60955	chr1	-	1436	6	NNC	ENSMUSG00000033159.15	novel	431	5	NA	NA	-29	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.3845921750625	101	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTGGCCTTTTCCTTCT	9265	False	NA	NA	False	NA	NA	NA	75119384	75112413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75113348_75116198_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75119286
60956	chr5	+	1460	10	ISM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	-38	3680	24	-14	5prime_fragment	FALSE	canonical	3	99	junction_1	13.0251418797514	133	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTGCATCTGACACTAC	NA	False	NA	NA	False	NA	NA	NA	108777659	108792968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
60957	chr2	-	1764	7	NNC	ENSMUSG00000018322.11	novel	1923	7	NA	NA	2	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	213.388859961235	2	89	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAACTGATTTTATTGAA	5950	False	NA	NA	False	NA	NA	NA	163913020	163895517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902920_163906834_163906965_163908489_163908590_163912832
60958	chr2	-	1371	7	Antisense	novelGene_ENSMUSG00000068580.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCCCTGGACTTCATCC	NA	False	NA	NA	False	NA	NA	NA	119047528	119041947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119042024_119042109_119042493_119045311_119045520_119045932_119046007_119046687_119046787_119046910_119047022_119047108
60959	chr17	-	891	6	NNC	ENSMUSG00000095677.3	novel	771	5	NA	NA	-23	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3733.64293954309	2	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTAAAGTTTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	6923240	6916345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6916737_6917085_6917164_6917501_6917626_6918324_6918513_6920709_6920752_6923172
60961	chr16	-	1821	2	NNC	ENSMUSG00000097621.2	novel	2010	2	NA	NA	1773	-381	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	42	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAGTTTTTTTGCTTAG	NA	False	NA	NA	False	NA	NA	NA	30022924	30020108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30020152_30021146
60962	chr12	-	1606	11	NNC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	319.408531507848	1	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGTATATGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	36206772	36141839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36142288_36154323_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
60963	chr1	+	1752	4	Antisense	novelGene_ENSMUSG00000055067.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	505	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTCCCTCAGCTTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	179236644	179345548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_179238032_179239245_179239353_179250921_179250983_179345351
60964	chr4	-	1110	7	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	2418	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	66.7607669218981	44	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	132568016	132554239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132554415_132555229_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954
60966	chr17	-	905	5	FSM	ENSMUSG00000023995.13	ENSMUST00000024794.12	956	5	44	7	14	-7	multi-exon	FALSE	canonical	3	26	junction_4	2.06155281280883	182	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTTGAGGGCCTGGTGTA	NA	False	NA	NA	False	NA	NA	NA	48758506	48755469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_48755829_48756047_48756190_48756910_48757099_48757899_48758090_48758480
60967	chr14	-	1490	4	FSM	ENSMUSG00000021930.15	ENSMUST00000100496.5	1459	4	11	-42	11	42	multi-exon	FALSE	canonical	3	20	junction_1	60.8075287736277	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATATGGTAATAATCATGG	NA	False	NA	NA	False	NA	NA	NA	61794196	61771711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_61772691_61783130_61783298_61787192_61787310_61793969
60968	chr5	+	1210	9	ISM	ENSMUSG00000028954.12	ENSMUST00000068825.8	3269	15	159	8673	-4	-8671	5prime_fragment	FALSE	canonical	3	384	junction_1	107.507848550699	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTTTGAGAGTTTAATG	NA	False	NA	NA	False	NA	NA	NA	24890980	24906703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_24891021_24894377_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347
60969	chrX	+	1326	6	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	-3	-127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	151.390092146085	1	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAATGTGGGTATCCGCT	NA	False	NA	NA	False	NA	NA	NA	99537957	99559604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99538163_99538510_99538805_99546600_99546793_99548795_99548876_99549545_99549659_99559162
60970	chr19	-	1429	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	-5	1	-4	-1	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	385	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATGGTCTTGGAACCTT	NA	False	NA	NA	False	NA	NA	NA	4675673	4672623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
60971	chr16	+	605	1	Intergenic	novelGene_3649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGATTATTGTTTAATGT	9163	False	NA	NA	False	NA	NA	NA	37393660	37394265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_37393700_37394300
60972	chr9	+	838	5	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	397.655236982993	113	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTCTGAGTGGCTTTTC	629	False	NA	NA	False	NA	NA	NA	45281743	45307453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302154_45306833
60973	chr17	+	947	6	NIC	ENSMUSG00000034729.17	novel	1017	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	652.177889842948	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTGGTTTTGTTTA	7137	False	NA	NA	False	NA	NA	NA	47679811	47689604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_47679880_47683351_47683417_47685897_47686035_47686858_47686968_47688684_47688775_47689126
60974	chr2	-	1235	5	FSM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	38	0	-12	0	multi-exon	FALSE	canonical	3	235	junction_2	13.6656503687164	771	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8677	False	NA	NA	False	NA	NA	NA	152857309	152850809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
60975	chr14	-	934	3	ISM	ENSMUSG00000021948.18	ENSMUST00000140701.2	1289	4	-19	3066	-19	-312	5prime_fragment	FALSE	canonical	3	115	junction_1	5.5	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTATGTCACCCTGCCCTGC	8019	False	NA	NA	False	NA	NA	NA	30322183	30320675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_30320804_30321274_30321464_30321566
60978	chr10	+	1866	13	ISM	ENSMUSG00000019977.17	ENSMUST00000020153.10	2793	18	47	13979	-4	2315	5prime_fragment	FALSE	canonical	3	89	junction_4	269.326268471698	2	89	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGGCATATGTCTATG	NA	False	NA	NA	False	NA	NA	NA	21171924	21230818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212874_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537
60979	chr4	-	1670	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	8	-3	8	3	multi-exon	FALSE	canonical	3	250	junction_2	8.5	550	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGATTCTGATTCTTAC	1055	False	NA	NA	False	NA	NA	NA	132191224	132186038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132187425_132190175_132190320_132191084
60981	chr4	+	736	5	NNC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	4	243	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10280.7245701604	3	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGATTCATTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	116542799	116556712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116542858_116544603_116544721_116548972_116549098_116550953_116551045_116556367
60982	chr4	-	1056	10	NNC	ENSMUSG00000028798.17	novel	1123	11	NA	NA	9	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	459.614519105782	2	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGTTCCTTGTCAGGCA	6386	False	NA	NA	False	NA	NA	NA	129494432	129485771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129485928_129486059_129486153_129486789_129486915_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
60983	chr1	-	1088	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	5	4	5	-4	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	21	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCTTCTTTCTTAAGCA	4961	False	NA	NA	False	NA	NA	NA	167221405	167199538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
60984	chr3	+	637	3	FSM	ENSMUSG00000074579.15	ENSMUST00000099075.4	2461	3	9	1815	2	140	multi-exon	FALSE	canonical	3	10	junction_2	1	31	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTACATGTATGCGCTG	NA	False	NA	NA	False	NA	NA	NA	65573657	65591785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_65573733_65576510_65576600_65591312
60985	chrX	-	1206	10	NNC	ENSMUSG00000057421.13	novel	2530	13	NA	NA	-9	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	383.485316086967	1	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAGAAGGAGCAAGGCAA	NA	False	NA	NA	False	NA	NA	NA	95000501	94984340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_94984431_94990599_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999602_95000263
60986	chr16	+	1423	11	Genic_Genomic	ENSMUSG00000106967.2	novel	469	3	NA	NA	360	165	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1358	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGTGACCGATTGGCAAAT	NA	False	NA	NA	False	NA	NA	NA	4826593	4831447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829559_4830105_4830162_4830291_4830376_4831168_4831242_4831329
60987	chr10	-	761	1	ISM	ENSMUSG00000035798.15	ENSMUST00000041723.15	4548	17	67523	3	5154	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTGGTGTCTGCTCAG	NA	False	NA	NA	False	NA	NA	NA	110778404	110777643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_110777600_110778400
60988	chr8	+	3612	2	ISM	ENSMUSG00000038872.11	ENSMUST00000043896.10	16433	10	234321	5443	234321	-5443	3prime_fragment	FALSE	canonical	2	7	junction_1	0	10	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGCCAAACCCCAGTCCC	NA	False	NA	NA	False	NA	NA	NA	109675596	109682819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_109678403_109682013
60990	chr9	-	1052	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	39	10	-2	-10	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	5210	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAATGCACTTTGTCCTG	5178	False	NA	NA	False	NA	NA	NA	20809880	20805654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
60991	chr17	+	1130	6	FSM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	2	65	2	-2	multi-exon	FALSE	canonical	3	354	junction_1	31.6569107779012	923	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACTGGTACCTATGCCT	4919	False	NA	NA	False	NA	NA	NA	33848065	33850688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
60992	chr17	-	3004	8	Antisense	novelGene_ENSMUSG00000014767.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	155	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTGCGGAGAAAATGACG	NA	False	NA	NA	False	NA	NA	NA	15737637	15720282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_15721620_15723226_15723389_15724533_15724918_15727587_15727692_15733792_15733882_15734489_15734657_15735874_15735977_15736978
60993	chr15	+	1074	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	-24	5	3	1	multi-exon	FALSE	canonical	3	427	junction_1	130.244215056008	1394	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTACTCACCTGTGCCA	2381	False	NA	NA	False	NA	NA	NA	102367612	102371212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
60994	chr1	+	654	6	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1304.21771188709	4	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACCCTTGGCTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	63216335	63218810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217036_63217695_63217725_63217990_63218058_63218406_63218533_63218616
60996	chr4	-	914	3	Antisense	novelGene_ENSMUSG00000039105.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	227	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCGCCTGCGCAGCGC	NA	False	NA	NA	False	NA	NA	NA	63468938	63463064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_63463237_63466821_63466918_63468292
60997	chr9	+	1194	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-23	-529	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	606.29313042455	1	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAGACTAGATGTAGTAT	NA	False	NA	NA	False	NA	NA	NA	108183614	108214604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212362_108214014
60998	chr4	+	1849	14	NIC	ENSMUSG00000029049.15	novel	1659	14	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	8.30698002644543	2	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGTAGCACCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	155171046	155229959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155171345_155171877_155171950_155173942_155174042_155175339_155175451_155176725_155176817_155177518_155177607_155185722_155185820_155186546_155186658_155195384_155195509_155195873_155196047_155213135_155213258_155213339_155213423_155226858_155226903_155229623
60999	chr11	+	1282	3	NNC	ENSMUSG00000048497.12	novel	1828	2	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2.5	94	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	62540270	62557180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62540375_62555495_62556063_62556569
61000	chr17	+	967	5	NNC	ENSMUSG00000059791.15	novel	1466	4	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	110.727988783324	25	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCACTTGTCTGTCCATG	4605	False	NA	NA	False	NA	NA	NA	36172225	36176292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402_36175475_36175955
61001	chr7	+	2487	1	Antisense	novelGene_ENSMUSG00000070527.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCTTTTTTGTGCTTGA	NA	False	NA	NA	False	NA	NA	NA	62067342	62069829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_62067300_62069800
61003	chr6	+	1618	6	NNC	ENSMUSG00000042097.18	novel	915	6	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	11.2853887837327	87	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTCCAATGTGTTCATTTG	NA	False	NA	NA	False	NA	NA	NA	117840039	117849727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117840104_117843355_117843536_117846178_117846235_117846362_117846438_117847216_117847736_117849003
61004	chr4	+	1261	4	ISM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	38357	1776	-8820	568	3prime_fragment	FALSE	canonical	3	428	junction_3	43.2845879679541	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTACATAGAACCGAGCAC	NA	False	NA	NA	False	NA	NA	NA	41174099	41191604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_41174128_41183244_41183343_41189151_41189287_41190604
61005	chr18	-	784	2	Genic_Genomic	ENSMUSG00000091957.4	novel	965	1	NA	NA	-12	-14	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGCTACCACATAAGGG	7411	False	NA	NA	False	NA	NA	NA	61393055	61392167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_61392269_61392372
61006	chr2	+	1535	12	NIC	ENSMUSG00000027509.12	novel	1742	12	NA	NA	15	-59	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	326.651961776187	373	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCCCTTCATCCCTTT	NA	False	NA	NA	False	NA	NA	NA	172841931	172857473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_172842044_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
61007	chrX	+	1576	4	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-497	-635	intron_retention	FALSE	non_canonical	0	0	junction_1	1214.06900774032	1	81	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAACCTTCTGTGAGAGA	NA	False	NA	NA	False	NA	NA	NA	74149057	74152748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74149982_74150777_74150857_74151784_74151911_74152301
61009	chr19	+	761	7	NNC	ENSMUSG00000024829.13	novel	802	7	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	692.205573190187	6	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCCTGTGACTTGCTGT	7365	False	NA	NA	False	NA	NA	NA	3333053	3341197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3333172_3334759_3334818_3335309_3335353_3336874_3337039_3337702_3337756_3338983_3339088_3340976
61010	chr11	-	935	4	NIC	ENSMUSG00000020736.13	novel	858	5	NA	NA	9	-11	intron_retention	FALSE	canonical	3	183	junction_3	12.8322510366134	867	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAACGCGAGGCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	115382668	115381256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115381794_115381963_115382025_115382096_115382198_115382432
61011	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256153	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148257100
61012	chr6	+	2799	3	ISM	ENSMUSG00000030282.15	ENSMUST00000144920.4	3236	5	13756	21	554	-21	3prime_fragment	FALSE	canonical	3	703	junction_1	37.5	19	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTTTAAGGAATTGTT	NA	False	NA	NA	False	NA	NA	NA	142716245	142720369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_142716344_142716891_142717064_142717840
61013	chr7	+	1214	1	Intergenic	novelGene_2911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAGAGGATCCCACAC	NA	False	NA	NA	False	NA	NA	NA	28646672	28647886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_28646700_28647900
61014	chr4	+	2047	2	FSM	ENSMUSG00000037348.16	ENSMUST00000081525.4	2351	2	300	4	-7	-4	multi-exon	FALSE	canonical	1	4	junction_1	0	23	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTTTGTTTTGACTC	NA	False	NA	NA	False	NA	NA	NA	134224307	134236120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_134224348_134234113
61015	chr7	+	1586	1	ISM	ENSMUSG00000041037.9	ENSMUST00000049020.9	6083	3	3840	2486	3840	-2486	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGGTAGCAGCAGCTTGG	NA	False	NA	NA	False	NA	NA	NA	24233953	24235539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_24234000_24235500
61016	chr19	+	2162	1	Intergenic	novelGene_1186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAACTTCTGCTAGAGC	NA	False	NA	NA	False	NA	NA	NA	3422114	3424276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_3422100_3424300
61017	chr1	-	3573	1	Antisense	novelGene_ENSMUSG00000042046.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	71	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGACAGTGAGATCATTG	5281	False	NA	NA	False	NA	NA	NA	132386533	132382960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_132383000_132386500
61020	chr7	-	1995	3	NNC	ENSMUSG00000074170.6	novel	5263	2	NA	NA	-2262	-3708	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	70	133	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCAACTCTTTTGATTGT	NA	False	NA	NA	False	NA	NA	NA	37929702	37920103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_37921583_37927364_37927814_37929635
61021	chr2	+	900	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	36	-4724	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	200.477398975545	369	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGATTATCTTCTGTTTT	396	False	NA	NA	False	NA	NA	NA	112285377	112297783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_112285485_112289809_112289925_112293145_112293285_112295081_112295163_112297325
61026	chr3	+	1463	12	NNC	ENSMUSG00000027714.12	novel	1617	12	NA	NA	1	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	207.967138217826	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTCCATAAACTACTGT	NA	False	NA	NA	False	NA	NA	NA	36606776	36619854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_36606901_36607183_36607279_36607954_36608014_36608188_36608292_36608786_36608916_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617261_36617407_36619366_36619446_36619577
61027	chr2	+	913	7	NNC	ENSMUSG00000042670.6	novel	955	7	NA	NA	80	-140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	176.278819550796	4	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	105735062	105795763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_105735254_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
61028	chr9	-	848	5	NNC	ENSMUSG00000025646.10	novel	2381	12	NA	NA	-7	-1832	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	70.0535509449735	1	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGTCTCCCACGTCAGGT	NA	False	NA	NA	False	NA	NA	NA	108903146	108898364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108898466_108900355_108900477_108900785_108900957_108901674_108901806_108902822
61029	chr14	+	1089	10	NIC	ENSMUSG00000022216.18	novel	1112	11	NA	NA	-2	-26	intron_retention	FALSE	canonical	1	117	junction_3	57.0505515494703	369	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAATAAATACATAGTTGC	NA	False	NA	NA	False	NA	NA	NA	55815910	55818959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55816071_55817051_55817085_55817227_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
61031	chr1	-	1303	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	12	20	-2	-20	multi-exon	FALSE	canonical	3	93	junction_1	18.4932420089069	72	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCCTGGTGTACTGTC	NA	False	NA	NA	False	NA	NA	NA	91340932	91339224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
61032	chr4	+	615	1	FSM	ENSMUSG00000070583.2	ENSMUST00000094481.2	1380	1	-162	927	-162	-927	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTCAGCCTGCCCGGAA	NA	False	NA	NA	False	NA	NA	NA	147953273	147953888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_147953300_147953900
61033	chrX	+	536	2	Genic_Genomic	ENSMUSG00000087235.2	novel	2200	1	NA	NA	233	56737	multi-exon	FALSE	canonical	0	0	junction_1	0	1	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTAGGAGTCCATCTG	NA	False	NA	NA	False	NA	NA	NA	151215990	151274409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_151216208_151274090
61034	chr15	-	1906	12	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	-6	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	44.499419626636	8	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGACTAACCGAGGTGTC	NA	False	NA	NA	False	NA	NA	NA	100567392	100538973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100539139_100539210_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
61035	chr1	+	2252	13	NIC	ENSMUSG00000026307.13	novel	2202	12	NA	NA	8	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	27.0846153542724	138	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCACCTGCTGAAGTG	NA	False	NA	NA	False	NA	NA	NA	91226067	91248789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_91226171_91227125_91227192_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518_91237626_91243210_91243248_91244785_91244870_91245313_91245414_91246759_91246836_91247798
61036	chr5	-	820	2	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	36807	-271	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	33	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTAAAGAAAGCCCACAG	NA	False	NA	NA	False	NA	NA	NA	34056787	34055530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056237_34056673
61037	chr2	+	1863	6	FSM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	187	4982	187	1232	multi-exon	FALSE	canonical	3	50	junction_2	5.74804314527997	120	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTTTGTCATTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	173579490	173621150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_173579544_173603909_173604063_173613313_173613418_173616186_173616268_173617904_173618082_173619855
61038	chr15	-	1342	10	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	516.270816099027	22	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96953832	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96893208_96907823_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
61039	chr2	+	990	4	NNC	ENSMUSG00000047909.12	novel	1001	5	NA	NA	369	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	30.3424894606007	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTAAAACATAGTTGGCC	9955	False	NA	NA	False	NA	NA	NA	11788488	11795127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_11788561_11789007_11789264_11791034_11791114_11794544
61041	chr2	+	2931	5	NNC	ENSMUSG00000001768.17	novel	4641	12	NA	NA	12966	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.35607132140714	19	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCAGTTGTCTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	145717529	145729533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145717848_145718310_145718617_145720763_145720896_145725241_145725406_145727522
61042	chr11	+	1186	7	NNC	ENSMUSG00000038335.14	novel	1369	6	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	300.123678209871	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTGTCTGGATTCTAG	NA	False	NA	NA	False	NA	NA	NA	74788919	74800166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792365_74800036
61044	chr4	-	2089	2	NNC	ENSMUSG00000047719.3	novel	2992	2	NA	NA	10	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	86	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTAATTAAAATAAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	148529208	148518976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148520687_148528829
61045	chr14	+	2072	8	NIC	ENSMUSG00000036291.7	novel	6321	8	NA	NA	7	-46	intron_retention	FALSE	canonical	3	8	junction_2	52.9188828610857	13	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTGTTCATTATTCTA	NA	False	NA	NA	False	NA	NA	NA	49304005	49328209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_49304322_49311005_49311652_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701_49323817_49327656
61046	chr2	+	1614	8	NNC	ENSMUSG00000017721.16	novel	1712	9	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	51.2576524899015	5	37	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACACATCACTGTTAATC	5125	False	NA	NA	False	NA	NA	NA	164339452	164345035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342204_164343000_164343089_164343193_164343292_164343404_164343571_164344397
61047	chr11	-	1090	5	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	0	17	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	509.684399898604	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGTTTCCCTAACTTG	NA	False	NA	NA	False	NA	NA	NA	117716673	117706334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117706966_117707272_117707393_117712922_117713017_117715496_117715608_117716539
61048	chr12	+	1151	7	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	-3	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1120.301149989	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTAAGTAAACAGAATTTTA	NA	False	NA	NA	False	NA	NA	NA	87313480	87320728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317245_87319886_87319999_87320220_87320273_87320364
61050	chr2	-	2613	1	Intergenic	novelGene_2734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTCCTTATCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	151855498	151852885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_151852900_151855500
61052	chr9	-	1246	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	18	1	combination_of_known_junctions	TRUE	canonical	0	0	junction_2	104.893067242576	879	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGACGTTGTGTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	106324859	106317251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
61053	chr7	+	917	1	FSM	ENSMUSG00000051527.12	ENSMUST00000054055.7	2610	1	2477	-784	2477	-272	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACCATTGTTTTCCATG	NA	False	NA	NA	False	NA	NA	NA	6966635	6967552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6966600_6967600
61054	chrX	+	630	2	Genic_Genomic	ENSMUSG00000067147.8	novel	801	1	NA	NA	-21	44	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAAATTACATCA	NA	False	NA	NA	False	NA	NA	NA	165637185	165638051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_165637602_165637837
61055	chr6	-	1430	9	NNC	ENSMUSG00000030189.16	novel	1853	10	NA	NA	-14	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1139.83954462898	2	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAAGGCTGTGTAACT	4957	False	NA	NA	False	NA	NA	NA	131365415	131341825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_131342369_131345358_131345524_131347285_131347378_131352936_131353144_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361578_131365351
61056	chr12	-	1464	18	NNC	ENSMUSG00000020974.7	novel	1706	19	NA	NA	23	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	137.798207610844	3	30	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	69274930	69248546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256711_69256769_69258143_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
61057	chr7	+	1572	3	ISM	ENSMUSG00000030410.17	ENSMUST00000146429.2	2080	4	2312	0	2279	0	3prime_fragment	FALSE	canonical	3	219	junction_1	21	139	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGTGTTTCTGTTCCCTGG	1650	False	NA	NA	False	NA	NA	NA	18814229	18816700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_18815227_18815843_18815919_18816200
61058	chr14	+	2133	10	NIC	ENSMUSG00000036291.7	novel	2544	9	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	13	junction_9	43.8037148207634	2	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTAAATGATTTCTTATG	NA	False	NA	NA	False	NA	NA	NA	49303989	49328253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_49304322_49311005_49311200_49311426_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701_49323817_49327656
61059	chrX	-	1537	11	Intergenic	novelGene_4093	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGGGAACAGTCAGGGAA	NA	False	NA	NA	False	NA	NA	NA	150844966	150820586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150820694_150824323_150824462_150829652_150829786_150829877_150830045_150830853_150830963_150841772_150841931_150842352_150842485_150842608_150842774_150843969_150844040_150844286_150844398_150844719
61060	chr4	+	1015	8	NNC	ENSMUSG00000006392.17	novel	1134	7	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	267.906624001113	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAACCCTGCCATTCCT	NA	False	NA	NA	False	NA	NA	NA	118266543	118272301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920_118272067_118272168
61061	chr1	+	2250	2	FSM	ENSMUSG00000079144.8	ENSMUST00000110831.4	2257	2	-3	10	0	-8	multi-exon	FALSE	canonical	3	16	junction_1	0	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAATACCAAATGTCCTG	958	False	NA	NA	False	NA	NA	NA	192855884	192858598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_192856089_192856552
61063	chr8	+	1276	3	FSM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	-6	3	0	0	multi-exon	FALSE	canonical	2	20	junction_1	3	268	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGATGTGGTCCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	106427779	106430122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106427950_106428805_106429029_106429239
61064	chr9	+	2151	3	FSM	ENSMUSG00000032578.8	ENSMUST00000085102.6	2850	3	674	25	-10	19	multi-exon	FALSE	canonical	1	4	junction_1	1	32	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCCTTCAGTGGGGTGT	NA	False	NA	NA	False	NA	NA	NA	107173898	107179161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107174234_107177122_107177344_107177566
61066	chr1	+	4268	19	FSM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	6	6472	-1	155	multi-exon	FALSE	canonical	3	10	junction_17	4.78713553878169	21	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTCTTTGGAATAAGTTC	NA	False	NA	NA	False	NA	NA	NA	189460470	189602420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_189460862_189518832_189519146_189530708_189530879_189554785_189554884_189557226_189557295_189564924_189564996_189565514_189565603_189568537_189568627_189571668_189571757_189572658_189572742_189575358_189575417_189578530_189578610_189582220_189583705_189587121_189587266_189588830_189589050_189592654_189592784_189595400_189595636_189597568_189597733_189602123
61067	chr9	-	765	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	17	-14	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	7	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
61068	chr15	-	1520	3	FSM	ENSMUSG00000058794.13	ENSMUST00000075192.13	1697	3	172	5	172	0	multi-exon	FALSE	canonical	0	0	junction_2	8	58	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTTCTATTGTGTCTTC	4343	False	NA	NA	False	NA	NA	NA	103163694	103156643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103157876_103159355_103159526_103163576
61069	chr9	+	1544	6	NIC	ENSMUSG00000032540.17	novel	3157	7	NA	NA	4	300	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	35.2363448728724	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAAATGGAACGAAAGGG	NA	False	NA	NA	False	NA	NA	NA	122180800	122209190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_122180905_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
61070	chr7	+	698	7	ISM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	21536	416	21461	-416	3prime_fragment	FALSE	canonical	3	3350	junction_2	240.67243760394	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAAAAATGATTGCGTGT	NA	False	NA	NA	False	NA	NA	NA	137060878	137069907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
61071	chr13	+	2786	1	ISM	ENSMUSG00000021318.16	ENSMUST00000110510.4	8170	15	263220	41	263220	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	16	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTCTTACAGTGTCAAT	NA	False	NA	NA	False	NA	NA	NA	15901784	15904570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_15901800_15904600
61072	chr4	-	1094	8	NIC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	-13	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	370.539154889362	521	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTCTTTTTTTTTTTGT	5948	False	NA	NA	False	NA	NA	NA	139079635	139074750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077159_139077746_139077806_139079579
61074	chr7	-	1817	2	FSM	ENSMUSG00000051314.12	ENSMUST00000186534.2	730	2	240	-1327	240	-2	multi-exon	FALSE	canonical	2	6	junction_1	0	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAAGCAAATGTTCACGG	6299	False	NA	NA	False	NA	NA	NA	30520162	30517783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30519540_30520101
61075	chr11	-	1255	6	NNC	ENSMUSG00000020922.12	novel	2256	5	NA	NA	9	571	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	382.999216709382	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCCAGAACCCGACGATTA	6404	False	NA	NA	False	NA	NA	NA	102076074	102054206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102054673_102054741_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
61076	chr2	+	1239	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	36	-553	12	553	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	62	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTGTGGTTCAGATGTG	NA	False	NA	NA	False	NA	NA	NA	25447894	25452647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
61077	chr9	-	2820	23	ISM	ENSMUSG00000047193.17	ENSMUST00000147193.8	13103	90	141288	9	75874	-9	3prime_fragment	TRUE	canonical	2	3	junction_17	3.84326178616872	13	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAACACCAGCACTGTG	NA	False	NA	NA	False	NA	NA	NA	7035669	6929312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_6929624_6935238_6935356_6940542_6940625_6941594_6941705_6955906_6955997_6967079_6967290_6983389_6983507_6992523_6992629_6993937_6994147_6996863_6996940_7001340_7001497_7002555_7002667_7005489_7005616_7006715_7006877_7009970_7010044_7011172_7011305_7014138_7014217_7015473_7015525_7016729_7016796_7023310_7023401_7031640_7031785_7034989_7035125_7035599
61078	chr7	-	2024	5	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_1	28.4022446296063	190	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	NA	False	NA	NA	NA	30298297	30289105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30289985_30290057_30290127_30290220_30290295_30290481_30291391_30298204
61079	chr7	-	1400	3	FSM	ENSMUSG00000107068.2	ENSMUST00000202798.2	1412	3	-2	14	-2	0	multi-exon	FALSE	canonical	3	276	junction_2	10	524	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGCGTGGTGGCGCACG	9428	False	NA	NA	False	NA	NA	NA	126616526	126614236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126614642_126615371_126615455_126615614
61080	chr19	+	796	8	NIC	ENSMUSG00000108414.2	novel	709	9	NA	NA	0	-16	intron_retention	FALSE	canonical	3	781	junction_1	106.950493983269	118	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCTCTTTATGCTATT	NA	False	NA	NA	False	NA	NA	NA	8701503	8703789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703467_8703602
61082	chr10	+	1816	10	NIC	ENSMUSG00000032763.12	novel	1606	10	NA	NA	-188	-3	intron_retention	FALSE	canonical	3	23	junction_1	44.98339885824	6	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACACATGGTAGTGTAT	5680	False	NA	NA	False	NA	NA	NA	78410614	78417590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889
61083	chr4	-	1266	7	NIC	ENSMUSG00000028232.14	novel	2690	8	NA	NA	-5	-1452	intron_retention	FALSE	canonical	0	0	junction_6	23.6602103869673	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAACAGCAGAAGAATTAG	601	False	NA	NA	False	NA	NA	NA	3574532	3551779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574239
61084	chr9	-	2363	11	ISM	ENSMUSG00000047766.16	ENSMUST00000065603.12	3017	17	10	26994	10	-3953	5prime_fragment	FALSE	canonical	1	5	junction_4	3.66742416417845	3	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGCACATGATTCTCTT	3505	False	NA	NA	False	NA	NA	NA	60595431	60521505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60587787_60587986_60592317_60592406_60594421_60594479_60595094
61085	chr2	-	2174	14	NNC	ENSMUSG00000039033.12	novel	2258	14	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	26.4939425922765	23	20	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	139908711	139675399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827115_139838048_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
61086	chr3	-	1462	6	Antisense	novelGene_ENSMUSG00000104803.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAACGGCGCCGTAAAGC	NA	False	NA	NA	False	NA	NA	NA	115716706	115681813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_115681926_115682087_115682244_115686354_115686484_115693341_115693451_115708686_115709555_115716618
61087	chr11	-	904	1	Intergenic	novelGene_2481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTGTTATATATGGCAA	5806	False	NA	NA	False	NA	NA	NA	101296454	101295550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_101295600_101296500
61089	chr5	-	1270	5	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-2493	3	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_3	224.308938742976	1	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTATTTGGGGGGGGGTG	5485	False	NA	NA	False	NA	NA	NA	114268772	114261992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114262316_114263592_114263792_114263920_114264169_114265586_114265831_114268516
61090	chr15	+	1297	6	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	182.547528057764	179	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	78819401	78825064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78819895_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
61091	chr7	-	1873	12	NNC	ENSMUSG00000058886.10	novel	2265	11	NA	NA	-490	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	48.0877297453947	21	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAACATTTTCTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	140908093	140890216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140890375_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354_140904530_140907767
61093	chr8	-	1569	9	NIC	ENSMUSG00000031816.16	novel	1060	10	NA	NA	-5	-4	intron_retention	FALSE	canonical	3	48	junction_6	14.260412862186	174	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAAGCTGCTTGTATGTT	NA	False	NA	NA	False	NA	NA	NA	121835123	121824299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
61095	SIRV1	+	935	4	Antisense	novelGene_SIRV1A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAACCAACTCTTGTACC	NA	False	NA	NA	False	NA	NA	NA	1302	10347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV1_+_1485_6337_6813_7551_7763_10280
61096	chr5	+	1177	3	Antisense	novelGene_ENSMUSG00000039477.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCGGGACGTGAAAAACCA	8955	False	NA	NA	False	NA	NA	NA	142711077	142713832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142711945_142712734_142712808_142713595
61097	chr5	+	3342	1	ISM	ENSMUSG00000039782.16	ENSMUST00000166713.9	7139	12	53176	36	49031	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	16	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTGACTGACTAATAAA	NA	False	NA	NA	False	NA	NA	NA	43443688	43447030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_43443700_43447000
61098	chr9	-	2121	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	11	612	6	-597	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	137	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTGTGAACTCAACATA	NA	False	NA	NA	False	NA	NA	NA	57347368	57320547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
61099	chrX	+	830	6	NNC	ENSMUSG00000001924.16	novel	761	5	NA	NA	206	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1664.14958462273	2	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20547039	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548353_20548494_20548713
61100	chr11	-	970	7	NNC	ENSMUSG00000018446.9	novel	1175	6	NA	NA	42	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	1954.26991198475	1333	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATCTCCAGGAAAGTTGA	NA	False	NA	NA	False	NA	NA	NA	70873791	70868681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873550_70873612_70873735
61101	chr17	-	523	3	Antisense	novelGene_ENSMUSG00000002660.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCAACACACCACGTGCA	NA	False	NA	NA	False	NA	NA	NA	57303188	57299907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_57300013_57300446_57300553_57302876
61103	chr6	+	1007	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	109	0	-40	0	multi-exon	TRUE	canonical	3	1725	junction_4	143.712769091685	487	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGTGTTGTCTGTTGCCT	78	False	NA	NA	False	NA	NA	NA	28423667	28426601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
61106	chr14	-	788	4	ISM	ENSMUSG00000021902.8	ENSMUST00000226310.2	1809	11	11319	1	296	-1	3prime_fragment	FALSE	canonical	3	5	junction_2	11.7284080571728	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCGGGTCTCCTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	30961655	30959653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_30960111_30960293_30960440_30961076_30961194_30961587
61107	chr9	-	1858	5	Antisense	novelGene_ENSMUSG00000047412.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTGGGGCGGCGAGGTG	NA	False	NA	NA	False	NA	NA	NA	30978484	30942198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_30942253_30964533_30965608_30973334_30973419_30975522_30975637_30977952
61109	chr19	-	1929	12	NNC	ENSMUSG00000024965.10	novel	2587	15	NA	NA	4940	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	7.46894396597954	86	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTTTCTTCTTCCTCCTC	7662	False	NA	NA	False	NA	NA	NA	6991773	6976345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215_6991319_6991427_6991597_6991691
61111	chr5	+	1420	5	ISM	ENSMUSG00000029234.14	ENSMUST00000031144.14	1897	6	15469	0	-96	0	3prime_fragment	FALSE	canonical	3	1062	junction_2	74.4143803306861	219	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTCCTCGTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	76347195	76357092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_76347418_76351953_76352130_76352483_76352664_76355648_76355755_76356356
61112	chr14	+	1362	2	Antisense	novelGene_ENSMUSG00000022179.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	152	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAACAAGAAACGTGTCT	7959	False	NA	NA	False	NA	NA	NA	54822109	54829769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_54822173_54828470
61114	chr8	-	4067	2	ISM	ENSMUSG00000038143.17	ENSMUST00000079195.6	10467	4	95578	4444	26369	1448	3prime_fragment	FALSE	canonical	1	1	junction_1	0	6	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTTGAAATGCTTTAA	NA	False	NA	NA	False	NA	NA	NA	47646859	47637526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_47639608_47644873
61116	chr19	-	1208	1	Intergenic	novelGene_1231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATAATGATCCTGCCTTA	NA	False	NA	NA	False	NA	NA	NA	23004881	23003673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_23003700_23004900
61117	chr4	+	1132	6	NNC	ENSMUSG00000028334.11	novel	2179	6	NA	NA	-34	-964	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	339.195165059881	4	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCACCCTGCTGCTGCTG	-31	True	NA	NA	False	NA	NA	NA	46489284	46502668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46489448_46492708_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
61118	chr19	-	1628	1	NIC	ENSMUSG00000097855.9	novel	859	6	NA	NA	35	-15645	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCGAATGTTCCACTTG	2037	False	NA	NA	False	NA	NA	NA	29498335	29496707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_29496700_29498300
61119	chr1	+	3244	2	ISM	ENSMUSG00000037509.22	ENSMUST00000159747.9	6514	14	-10	87877	-10	-81836	5prime_fragment	FALSE	canonical	2	2	junction_1	0	5	79	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCCTGCAGACCCACAAG	NA	False	NA	NA	False	NA	NA	NA	34717258	34763943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_34717344_34760784
61122	chr1	-	1327	9	NNC	ENSMUSG00000016481.16	novel	1501	9	NA	NA	18	-62	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_8	97.9239979524937	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTATAAGAGTTGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	194813824	194781028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813672
61123	chr8	-	1664	9	FSM	ENSMUSG00000019732.15	ENSMUST00000019876.12	1769	9	110	-5	110	5	multi-exon	FALSE	canonical	3	18	junction_4	4.64858849544676	65	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATTTTGTTTTACTT	NA	False	NA	NA	False	NA	NA	NA	73197604	73178014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_73178600_73179610_73179704_73181005_73181138_73181913_73182010_73185216_73185406_73188633_73188729_73192275_73192480_73197238_73197341_73197436
61124	chr16	+	1271	2	FSM	ENSMUSG00000022721.20	ENSMUST00000231509.2	290	2	-1022	41	-13	-41	multi-exon	FALSE	canonical	3	300	junction_1	0	16	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATGTTTGATAAGCCAG	375	False	NA	NA	False	NA	NA	NA	18066852	18068543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18067898_18068317
61125	chr10	+	1042	8	NNC	ENSMUSG00000020056.17	novel	1052	7	NA	NA	1	-45	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	166.779336066479	77	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTAGTTTGGGTTTACCGA	NA	False	NA	NA	False	NA	NA	NA	88037033	88081975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88037155_88037673_88037773_88040491_88040606_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
61126	chr11	+	1627	13	FSM	ENSMUSG00000040711.9	ENSMUST00000038753.6	7413	13	80	5706	60	-5706	multi-exon	FALSE	canonical	3	19	junction_11	4.75146176338281	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGCTCCGGGGCTCCTCC	351	False	NA	NA	False	NA	NA	NA	32297899	32372467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_32297969_32321517_32321599_32331433_32331510_32337927_32338005_32346441_32346534_32347065_32347092_32353860_32353996_32357561_32357667_32361456_32361575_32364200_32364428_32365922_32365973_32367079_32367206_32372022
61128	chr4	-	1868	3	NNC	ENSMUSG00000035201.16	novel	1695	3	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.5	1	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTACTCTTTACTTCTC	NA	False	NA	NA	False	NA	NA	NA	101695338	101692161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101693139_101694021_101694588_101695013
61129	chr4	+	884	1	ISM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	117360	0	117275	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130507991	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_130508000_130508900
61130	chr15	-	1629	5	FSM	ENSMUSG00000054855.14	ENSMUST00000003451.11	2203	5	4	570	1	-570	multi-exon	FALSE	canonical	3	35	junction_3	4.54835134966506	125	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGGGTTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	98575338	98567655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98568724_98570391_98570527_98571726_98571837_98574367_98574456_98575110
61131	chr1	+	1895	12	NIC	ENSMUSG00000026546.17	novel	699	5	NA	NA	4	-1	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	9.63979355768114	68	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAGCTCCACTTCACTG	NA	False	NA	NA	False	NA	NA	NA	172353619	172373436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_172353746_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
61132	chr11	+	1283	3	FSM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	170	29	170	-29	multi-exon	TRUE	canonical	3	1535	junction_2	51	451	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTAAAAGACTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	116325089	116329874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116325255_116325384_116325448_116328819
61133	chr3	-	628	5	ISM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	21616	2	21616	-2	3prime_fragment	FALSE	canonical	3	187	junction_3	29.8412466227535	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTCCTTCTCCTCTTTTT	513	False	NA	NA	False	NA	NA	NA	84041477	83995241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324
61134	chr14	+	604	3	FSM	ENSMUSG00000012405.17	ENSMUST00000112598.9	802	3	238	-40	238	0	multi-exon	FALSE	canonical	3	10327	junction_1	2922.5	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	4199307	4200736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4199418_4199652_4199790_4200379
61135	chr16	+	627	1	FSM	ENSMUSG00000083585.2	ENSMUST00000122114.2	388	1	235	-474	235	474	mono-exon	FALSE	NA	NA	NA	NA	NA	17	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACGTAACATACTGCTG	NA	False	NA	NA	False	NA	NA	NA	4357406	4358033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4357400_4358000
61136	chr7	-	1414	6	NIC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-14	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	33.7579620237952	23	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATAGACACCTCTTGATT	847	False	NA	NA	False	NA	NA	NA	44753193	44742417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44742780_44743205_44743323_44751333_44751610_44751837_44752096_44752426_44752698_44753063
61137	chr9	-	3285	6	NNC	ENSMUSG00000050721.10	novel	3273	6	NA	NA	-29	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.2773621594641	2	109	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTATGGAACTTCTCT	NA	False	NA	NA	False	NA	NA	NA	65487351	65461678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_65464358_65465900_65466000_65466701_65466807_65471165_65471286_65480261_65480412_65487219
61138	chr1	-	895	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2500.70481731318	8	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATGTGTCGGAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	16174622	16171523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172899_16172989_16173054_16173391_16173559_16173733_16173909_16174588
61139	chr2	+	2349	2	ISM	ENSMUSG00000052155.6	ENSMUST00000063886.4	5686	11	84387	1440	8107	-1440	3prime_fragment	FALSE	canonical	3	49	junction_1	0	13	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATAATACGACTGTTCGGC	NA	False	NA	NA	False	NA	NA	NA	48788507	48791841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_48788621_48789605
61140	chr8	+	1110	5	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	-7	363	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	356.055122137008	4	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTGTTATTTCATATGT	NA	False	NA	NA	False	NA	NA	NA	107783525	107785661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785015
61141	chr9	-	2066	13	NNC	ENSMUSG00000032386.16	novel	1999	13	NA	NA	10	105	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	59.2262024407741	1	100	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAGATTAACATTTTTAC	NA	False	NA	NA	False	NA	NA	NA	65792327	65740332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782299_65786356_65786491_65788172_65788343_65792209
61144	chr14	-	2141	10	NNC	ENSMUSG00000033712.7	novel	3725	21	NA	NA	-1291	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	69.1719989020035	1	108	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	70379836	70375616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377994_70378316_70378462_70379059_70379297_70379402_70379620_70379808
61146	chr9	+	1429	1	ISM	ENSMUSG00000074039.11	ENSMUST00000131898.2	2660	2	1030	290	1030	-290	mono-exon	FALSE	NA	NA	NA	NA	NA	11	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCCTTCTCAATATTTAC	NA	False	NA	NA	False	NA	NA	NA	114198513	114199942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114198500_114199900
61147	chr12	+	952	2	NIC	ENSMUSG00000021258.11	novel	2789	12	NA	NA	68	-14894	intron_retention	FALSE	canonical	3	19	junction_1	0	2	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGATACGTAAGTAAATTT	NA	False	NA	NA	False	NA	NA	NA	108146064	108153511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_108146140_108152634
61148	chr4	-	2163	11	FSM	ENSMUSG00000028538.13	ENSMUST00000097912.8	2143	11	-18	-2	-10	0	multi-exon	FALSE	canonical	3	26	junction_9	21.8286508973871	77	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTCCTGTTGTTTTC	1876	False	NA	NA	False	NA	NA	NA	117992097	117789354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991930
61149	chr5	-	1511	9	NNC	ENSMUSG00000025537.13	novel	2374	10	NA	NA	-7	-746	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	4.49305018890286	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAACCCTGTGGTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	129902953	129893007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129893531_129893815_129893942_129894757_129894912_129895036_129895128_129895702_129895867_129898301_129898368_129902056_129902112_129902509_129902689_129902800
61150	chr15	-	1264	9	NNC	ENSMUSG00000022433.22	novel	3174	9	NA	NA	-18	256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	258.458289671661	9	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACAAGCTTAAGGAAGCAT	8411	False	NA	NA	False	NA	NA	NA	79339785	79308109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79308280_79308351_79308454_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
61153	chrX	+	962	3	NIC	ENSMUSG00000051827.12	novel	795	4	NA	NA	-1	4	intron_retention	FALSE	canonical	3	47	junction_2	1.5	294	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	36508627	36513343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_36509314_36510828_36510875_36513113
61154	chr12	-	2578	14	NNC	ENSMUSG00000001729.15	novel	2690	14	NA	NA	-475	-7	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_13	94.3623257487333	107	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTGTGGTTTGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	112638473	112620261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_112621212_112621560_112621664_112622935_112623024_112623210_112623426_112623501_112623631_112623701_112623828_112624100_112624170_112624831_112624898_112624979_112625112_112625562_112625711_112625983_112626096_112628613_112628743_112637949_112638089_112638301
61155	chr14	+	960	1	Genic_Genomic	ENSMUSG00000021877.13	novel	NA	NA	NA	NA	11002	8	mono-exon	FALSE	NA	NA	NA	NA	NA	10	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACTAATGTATTCCATGT	NA	False	NA	NA	False	NA	NA	NA	26385287	26386247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_26385300_26386200
61156	chr9	+	174	1	FSM	ENSMUSG00000102411.2	ENSMUST00000194508.2	2749	1	1410	1165	1410	-1165	mono-exon	FALSE	NA	NA	NA	NA	NA	34	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	72636831	72637005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72636800_72637000
61158	chr11	+	2533	5	NIC	ENSMUSG00000018554.14	novel	1673	9	NA	NA	-1491	-7	intron_retention	FALSE	canonical	3	80	junction_3	5.06828373317832	50	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGGCTTTCTTGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	69829181	69832414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
61159	chr4	-	361	2	ISM	ENSMUSG00000028845.16	ENSMUST00000131113.8	559	5	580	280	136	264	internal_fragment	FALSE	canonical	3	11	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGAGATCGATAGCTTG	3716	False	NA	NA	False	NA	NA	NA	126218856	126218412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_126218513_126218595
61160	chr5	+	788	6	NNC	ENSMUSG00000041453.13	novel	899	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6426.74376648081	5	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	NA	False	NA	NA	NA	146770003	146772796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772428_146772689
61162	chr14	+	1052	1	Intergenic	novelGene_599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCACACACAGAGAGACAT	NA	False	NA	NA	False	NA	NA	NA	65929312	65930364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_65929300_65930400
61167	chr11	-	811	3	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	-35	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10985	3	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	6432	False	NA	NA	False	NA	NA	NA	69812051	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808383_69811988
61168	chr3	+	1621	1	NIC	ENSMUSG00000106519.2	novel	1150	2	NA	NA	8650	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTACAAGTCTTAGTTAAAT	8205	False	NA	NA	False	NA	NA	NA	34834873	34836494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34834900_34836500
61169	chr10	+	2036	1	NIC	ENSMUSG00000040675.18	novel	3669	28	NA	NA	9520	-5116	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACCCACCCACCTTTGAT	NA	False	NA	NA	False	NA	NA	NA	3991799	3993835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_3991800_3993800
61170	chr9	-	1319	7	NIC	ENSMUSG00000032412.9	novel	1994	7	NA	NA	66	-401	combination_of_known_junctions	TRUE	canonical	1	12	junction_6	297.823773396282	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGAAAGTAGACTCTGC	NA	False	NA	NA	False	NA	NA	NA	96231363	96215108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96231240
61171	chr14	-	1959	2	ISM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	4185	4	820	-4	3prime_fragment	FALSE	canonical	3	38	junction_1	0	1	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTAAGACCTTTCTATC	NA	False	NA	NA	False	NA	NA	NA	46623941	46620980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_46622170_46623171
61172	chr7	+	1351	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	22	0	22	0	multi-exon	FALSE	canonical	2	31	junction_4	14.5134420452214	168	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	377	False	NA	NA	False	NA	NA	NA	43430480	43434834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
61173	chr11	-	1774	11	NNC	ENSMUSG00000020419.12	novel	1343	11	NA	NA	5	13	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	72.4988965433268	136	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTAACATGGGGTTTA	NA	False	NA	NA	False	NA	NA	NA	4391098	4295800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876_4390941_4391080
61175	chr16	-	2485	6	Intergenic	novelGene_3669	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCCCACTTCCAGGCG	NA	False	NA	NA	False	NA	NA	NA	55946143	55895882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_55895940_55902716_55902770_55909744_55909827_55917701_55917793_55931966_55932165_55944139
61177	chr2	-	1644	8	FSM	ENSMUSG00000026972.16	ENSMUST00000028349.14	1666	8	17	5	17	-2	multi-exon	FALSE	canonical	3	62	junction_2	7.55658923167897	164	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGAGCTGGGCGAGTGGCT	9334	False	NA	NA	False	NA	NA	NA	24825247	24815368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
61178	chr11	-	1465	8	FSM	ENSMUSG00000018570.18	ENSMUST00000018714.13	1485	8	24	-4	-20	-1	multi-exon	FALSE	canonical	2	12	junction_7	3.28260722659316	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGGAGCTGCGTGTC	9769	False	NA	NA	False	NA	NA	NA	69791740	69788184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
61179	chr17	+	2153	9	ISM	ENSMUSG00000039656.18	ENSMUST00000173354.9	2502	10	687	4	482	-2	3prime_fragment	FALSE	canonical	3	65	junction_6	50.9986213048941	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATAGCCATTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	34251856	34257365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
61180	chr3	-	1326	1	Intergenic	novelGene_3076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGCACTAATTTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	9012214	9010888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_9010900_9012200
61181	chr17	-	2933	10	NNC	ENSMUSG00000023912.11	novel	2895	9	NA	NA	32	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.17517649512354	17	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTGAAAAAAAAATGGCTCA	NA	False	NA	NA	False	NA	NA	NA	43978073	43952794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_43954568_43957911_43958015_43958582_43958676_43960515_43960601_43964252_43964366_43968572_43968696_43970706_43970790_43972504_43972590_43974964_43975157_43977790
61182	chr1	+	1849	14	NIC	ENSMUSG00000026480.13	novel	2596	15	NA	NA	-4	-735	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	7.8987677864575	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGACAACTCAGAAGATTT	502	False	NA	NA	False	NA	NA	NA	152683583	152712006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_152683957_152686668_152686752_152692741_152692851_152697266_152697402_152699967_152700076_152701632_152701693_152703168_152703213_152706102_152706245_152707364_152707441_152709073_152709097_152709527_152709680_152709819_152709932_152710777_152710956_152711752
61183	chr3	+	1093	10	NNC	ENSMUSG00000036632.10	novel	1471	10	NA	NA	0	-362	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	163.680432399897	1	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCTGCCTTTGTATATT	NA	False	NA	NA	False	NA	NA	NA	54642979	54656854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653882_54654039_54656028_54656115_54656649
61184	chr6	-	3330	12	ISM	ENSMUSG00000030022.15	ENSMUST00000167391.2	6033	30	77930	-1	31121	1	3prime_fragment	FALSE	canonical	2	6	junction_11	6.57065854530642	18	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGCTTCTCTTGGCTTC	NA	False	NA	NA	False	NA	NA	NA	92800492	92749681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_92751558_92754373_92754469_92763826_92763932_92770463_92770556_92772904_92773039_92773130_92773226_92773331_92773427_92773969_92774103_92774959_92775155_92783995_92784167_92793450_92793625_92800327
61185	chr19	+	1120	3	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	341	0	intron_retention	FALSE	non_canonical	0	0	junction_2	85.5	2	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	5540933	5544057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5541077_5542524_5542853_5543408
61186	chr2	+	1616	8	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	105.122668869298	1	81	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTGTTTTGGTGTGTTAT	80	False	NA	NA	False	NA	NA	NA	13579121	13587633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580351_13580413_13583223_13583286_13584249_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
61187	chr13	+	1073	7	NIC	ENSMUSG00000015536.15	novel	1193	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_5	58.0672502840935	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTGTCTCCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	114954801	114965265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961802_114962693_114962818_114964824
61188	chr7	-	1099	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	-24	0	-24	0	multi-exon	FALSE	canonical	3	119	junction_2	18.8473399243029	456	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	44647027	44640645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
61189	chr9	+	2476	3	ISM	ENSMUSG00000047257.14	ENSMUST00000146794.4	1208	5	110	6	110	-3	intron_retention	FALSE	canonical	0	0	junction_1	1.5	3	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGAGCTGTCTCTCTTCT	73	False	NA	NA	False	NA	NA	NA	110663765	110670375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110663808_110667488_110667637_110668089
61190	chrX	+	657	5	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	-8720	-752	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	331.936270238731	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAATATTGGAGATTG	NA	False	NA	NA	False	NA	NA	NA	150810722	150844938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150810949_150811036_150811178_150811960_150812044_150812186_150812334_150844878
61191	chr5	+	1682	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	54	11	19	-11	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	166	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATACAGCACGCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	76288171	76303315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
61193	chr13	-	1200	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	25	26	25	-26	multi-exon	FALSE	canonical	3	285	junction_6	26.2865816530031	792	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGCATTATTAACTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100912382	100896207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
61194	chr18	-	1865	8	FSM	ENSMUSG00000024349.11	ENSMUST00000115728.5	2299	8	87	347	-5	5	multi-exon	TRUE	canonical	2	5	junction_4	3.35638289270592	37	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATGGCCTCTTCCCCTTG	NA	False	NA	NA	False	NA	NA	NA	35873520	35867080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35872977_35873068_35873359
61196	chr18	+	767	5	NNC	ENSMUSG00000024646.15	novel	833	5	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	445.209150287817	1814	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATATGTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	84869507	84897989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84869719_84889629_84889759_84891264_84891295_84895951_84895987_84897627
61197	chr19	-	2264	4	NNC	ENSMUSG00000038843.19	novel	4606	3	NA	NA	5	49	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	19.94993734326	35	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTAAGTTATCCTTGTAAA	8039	False	NA	NA	False	NA	NA	NA	17334026	17305983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_17307853_17310473_17310621_17313562_17313705_17333920
61198	chr13	+	1750	7	NIC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	342.421118248017	8	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTGTTTTGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	85337536	85361842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_85337772_85338872_85338996_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
61200	chr1	-	1869	8	NNC	ENSMUSG00000062729.13	novel	4412	8	NA	NA	2945	5640	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.8946058522793	1	96	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAAGCGGGCGCTGGGGCG	9493	False	NA	93	True	NA	NA	NA	171104456	171097922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171097983_171098854_171098944_171099276_171099569_171100088_171100325_171101520_171101717_171101845_171101957_171103452_171103554_171103672
61201	chr1	-	2755	1	ISM	ENSMUSG00000026110.16	ENSMUST00000042161.15	7030	15	94136	5	53996	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATGAGTGGATAGAATT	7459	False	NA	NA	False	NA	NA	NA	37481180	37478425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_37478400_37481200
61202	chr5	+	896	5	FSM	ENSMUSG00000029177.10	ENSMUST00000199617.2	827	5	-88	19	-2	-11	multi-exon	FALSE	canonical	3	33	junction_3	705.72033235553	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAACCTGAATAAAG	9199	False	NA	NA	False	NA	NA	NA	30824253	30831711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830610_30830788_30831381
61203	chr17	-	2357	10	NNC	ENSMUSG00000003534.18	novel	2633	16	NA	NA	8965	-16	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_6	10.60863845536	37	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGTTTTTCCACAG	6741	False	NA	NA	False	NA	NA	NA	35999898	35992477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35993411_35993515_35993666_35994328_35994564_35994986_35995206_35995886_35996015_35996197_35996443_35998036_35998203_35999430_35999583_35999677_35999762_35999853
61204	chr14	-	1524	6	ISM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	33	2518	4	111	5prime_fragment	FALSE	canonical	3	126	junction_2	19.089263998384	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGTTTGATGTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	52542552	52534815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
61206	chr9	-	2037	10	NNC	ENSMUSG00000039048.16	novel	2289	11	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	81.3648997638432	22	103	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGCAGCCTCTTGA	NA	False	NA	NA	False	NA	NA	NA	35122211	35115510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35116420_35116600_35116706_35116884_35116987_35117155_35117317_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
61207	chr5	+	940	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	-18	0	-18	0	multi-exon	FALSE	canonical	3	318	junction_1	5	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3389	False	NA	NA	False	NA	NA	NA	53424461	53435882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_53424701_53434484_53434542_53435238
61208	chr9	+	2311	9	NIC	ENSMUSG00000032308.10	novel	2826	16	NA	NA	45	-311	intron_retention	FALSE	canonical	3	37	junction_2	6.18339510301582	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTGGACCTGTACCAGC	NA	False	NA	NA	False	NA	NA	NA	57496779	57501442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_57496970_57497606_57497748_57497943_57498602_57499276_57500258_57500444_57500551_57500740_57500782_57501033_57501137_57501264_57501330_57501416
61209	chr5	+	1878	11	NNC	ENSMUSG00000034573.15	novel	7915	48	NA	NA	21221	21872	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7.74919350642375	1	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCTCAGCTGAGCAAAGA	6205	False	NA	NA	False	NA	NA	NA	103698652	103713077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_103698723_103698912_103699045_103702561_103703023_103703953_103704086_103705744_103705839_103707002_103707089_103707736_103707900_103709797_103710013_103710140_103710240_103711876_103712206_103712980
61210	chr11	-	3987	1	ISM	ENSMUSG00000038807.20	ENSMUST00000102521.9	6565	25	202694	150	20533	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	21	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATAACATATTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	74278318	74274331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_74274300_74278300
61211	chr8	-	1228	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	67	0	-6	0	multi-exon	FALSE	canonical	3	468	junction_1	23.7200337267888	1635	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	NA	False	NA	NA	NA	96161430	96146876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
61212	chr11	+	1276	9	ISM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	90	18167	0	12488	5prime_fragment	FALSE	canonical	3	272	junction_7	26.0911862512995	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCTTAGGAACTTAATTT	NA	False	NA	NA	False	NA	NA	NA	72938698	72961976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623
61213	chr4	+	2352	5	Antisense	novelGene_ENSMUSG00000041530.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGATCCCAGGCTGGT	9202	False	NA	NA	False	NA	NA	NA	126330353	126335026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_126331844_126332902_126333405_126333634_126333839_126334159_126334259_126334969
61214	chr17	-	2007	4	NIC	ENSMUSG00000024114.16	novel	1799	5	NA	NA	0	-3	intron_retention	FALSE	canonical	3	22	junction_1	3.85861230093008	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCAGTTTGGATGCCTT	NA	False	NA	NA	False	NA	NA	NA	24063129	24060028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24061500_24062415_24062846_24062930_24062958_24063050
61215	chr4	-	1178	3	NIC	ENSMUSG00000063882.13	novel	579	4	NA	NA	38	-2	intron_retention	FALSE	canonical	3	1017	junction_2	27.5	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCTTTGTCCTTCCTTT	7735	False	NA	-79	True	NA	NA	NA	115932190	115924164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_115924370_115927059_115927955_115932112
61216	chr14	+	629	1	ISM	ENSMUSG00000003469.10	ENSMUST00000003561.10	2838	5	10046	682	8999	-682	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACTGAGTGTGACCCAC	NA	False	NA	NA	False	NA	NA	NA	70704961	70705590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_70705000_70705600
61217	chr16	+	1226	10	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	28	5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	60.3455072637026	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCCTTGAGATGCTGT	NA	False	NA	NA	False	NA	NA	NA	8288695	8308065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
61218	chr17	-	3042	2	Genic_Genomic	ENSMUSG00002075126.1	novel	111	1	NA	NA	-3476	441	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	87	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGATGACGGACCTCAA	NA	False	NA	NA	False	NA	NA	NA	63407471	63403443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_63406378_63407363
61219	chr1	+	2106	1	ISM	ENSMUSG00000046404.6	ENSMUST00000049813.6	6128	2	4922	4	4922	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTTGTGCGAGCATATT	NA	False	NA	NA	False	NA	NA	NA	130649985	130652091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_130650000_130652100
61220	chr2	-	1927	1	Intergenic	novelGene_2636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCCCCCAATTGTCCTAAA	NA	False	NA	NA	False	NA	NA	NA	61576137	61574210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_61574200_61576100
61221	chr2	-	2171	9	Fusion	ENSMUSG00000026727.11_ENSMUSG00000102691.2	novel	3458	9	NA	NA	-4	-1	multi-exon	FALSE	canonical	1	1	junction_1	117.631243192444	4	17	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAACAATTGTTTGCAT	7143	False	NA	NA	False	NA	NA	NA	13276126	13166562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_13167884_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
61223	chr10	-	1401	6	FSM	ENSMUSG00000025374.14	ENSMUST00000164199.8	1371	6	-30	0	-22	0	multi-exon	FALSE	canonical	3	274	junction_1	33.0732520324204	638	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	128245627	128237263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115
61224	chr1	+	1642	12	Antisense	novelGene_ENSMUSG00000026019.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACAAACCCCAGAAGGGA	72	False	NA	NA	False	NA	NA	NA	60117306	60137071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_60117403_60119678_60119751_60121195_60121329_60121449_60121557_60121666_60121809_60122913_60123012_60126182_60126358_60127200_60127315_60128409_60128517_60130177_60130274_60133590_60133688_60136666
61225	chr2	-	1082	2	Antisense	novelGene_ENSMUSG00000027076.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTCTAGCCTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	84660536	84657378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_84658055_84660130
61226	chr6	-	1782	3	NNC	ENSMUSG00000030353.16	novel	1909	11	NA	NA	46201	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.5	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGATATCTGCGCTCG	8914	False	NA	NA	False	NA	NA	NA	128206339	128201255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128202031_128205244_128205443_128205530
61228	chr4	+	1059	8	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	12	367	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1078.54134300519	2	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTGGGTTAAAACCAGAT	NA	False	NA	NA	False	NA	NA	NA	118478058	118483182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480939_118482719_118482883_118483024
61229	chr17	+	2982	13	ISM	ENSMUSG00000023805.18	ENSMUST00000115790.8	4808	26	10230	18016	-2016	-16	internal_fragment	FALSE	canonical	3	11	junction_1	4.57954388801136	7	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGCCTTGGTTCCTAAG	NA	False	NA	NA	False	NA	NA	NA	6036244	6070814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_6036518_6040410_6040637_6047152_6047237_6053373_6053436_6055597_6055695_6058212_6058386_6060006_6060089_6060670_6060821_6060934_6061101_6063782_6063975_6066540_6066623_6067761_6067903_6069560
61230	chr15	-	2367	1	Intergenic	novelGene_3362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTCTCTTCCCTAGACTC	NA	False	NA	NA	False	NA	NA	NA	97276941	97274574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97274600_97276900
61231	chr17	-	969	3	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	1	-3	intron_retention	FALSE	canonical	3	21	junction_1	60	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGAATTGGAACATTG	NA	False	NA	NA	False	NA	NA	NA	79202528	79192328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79192646_79198274_79198370_79201971
61232	chr5	+	1185	4	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	74	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCGCACGCCGAGTCCCGA	3019	False	NA	NA	False	NA	NA	NA	117420717	117425629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117421529_117423778_117423886_117424198_117424312_117425475
61233	chr11	+	1340	3	NNC	ENSMUSG00000048497.12	novel	589	2	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8	128	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	62539520	62557180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62539683_62555495_62556063_62556569
61234	SIRV5	+	638	6	NNC	SIRV5A	novel	1890	17	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_4	4513.96087710117	6	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1054	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_8523_8586_10858
61235	chr13	+	1103	6	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	73	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	820.455727020051	31	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGATACTGTGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	49835739	49887731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49843982_49887134
61236	chrX	-	2980	1	Antisense	novelGene_ENSMUSG00000043929.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAAAT	NA	False	NA	NA	False	NA	NA	NA	93321330	93318350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_93318400_93321300
61237	chr15	+	2120	11	NNC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	50	-3	intron_retention	FALSE	non_canonical	0	0	junction_6	113.451355214471	1	106	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACCTTGGGATCCTGGC	4882	False	NA	NA	False	NA	NA	NA	76215599	76219095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76215664_76216095_76216276_76216359_76216488_76216683_76216832_76216909_76217012_76217102_76217300_76217375_76217574_76217663_76218091_76218213_76218405_76218489_76218661_76218781
61238	chr15	+	1461	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	18.5	91	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4010	False	NA	NA	False	NA	NA	NA	98997279	99002618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98997366_98998703_98999657_99002196
61239	chr13	+	3825	2	Antisense	novelGene_ENSMUSG00000021711.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGCAAGGAGAAGAGTTC	-2	True	NA	NA	False	NA	NA	NA	104287457	104291778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_104290847_104291342
61240	chr15	-	2127	7	FSM	ENSMUSG00000000489.8	ENSMUST00000000500.8	2944	7	810	7	-795	-7	multi-exon	FALSE	canonical	2	5	junction_6	4.63381292481928	14	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACCACGTGAATCTG	NA	False	NA	NA	False	NA	NA	NA	79898199	79880081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79898136
61242	chr11	-	1295	2	FSM	ENSMUSG00000020736.13	ENSMUST00000125940.2	395	2	-631	-269	-18	-11	multi-exon	FALSE	canonical	3	196	junction_1	0	148	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAACGCGAGGCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	115382659	115381256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115381571_115381678
61243	chr10	-	1973	9	ISM	ENSMUSG00000039697.17	ENSMUST00000068567.5	5105	16	172	45293	172	3288	5prime_fragment	FALSE	canonical	1	1	junction_8	1.49478259288767	4	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGAGGTTCTGGATTCT	NA	False	NA	NA	False	NA	NA	NA	30678931	30566872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_30567784_30570064_30570250_30572063_30572190_30574125_30574240_30577914_30578023_30580596_30580677_30598641_30598863_30647715_30647837_30678824
61244	chr2	-	1627	12	FSM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	6	3	0	-2	multi-exon	FALSE	canonical	3	155	junction_4	21.4987987363815	841	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTTGTTCTGATGACA	NA	False	NA	NA	False	NA	NA	NA	155199344	155120165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
61245	chr4	+	359	3	ISM	ENSMUSG00000056300.15	ENSMUST00000140089.7	578	4	-25	1473	-25	-1473	5prime_fragment	FALSE	canonical	3	35	junction_1	192.5	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAATGCACTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	146599351	146620004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_146599500_146616526_146616611_146619877
61246	chr1	+	985	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	108	180	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATGTTATTCTTAT	4269	False	NA	NA	False	NA	NA	NA	135159840	135161143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_135159930_135160247
61247	chr11	+	1139	3	NNC	ENSMUSG00000020397.16	novel	1193	3	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	268	35	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTGTCATTCTTGGAAA	NA	False	NA	NA	False	NA	NA	NA	46327762	46332356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_46327837_46330704_46330803_46331389
61248	chr9	-	1735	3	NNC	ENSMUSG00000032418.16	novel	1055	8	NA	NA	31087	10	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_2	172.5	160	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAGCCTAGAGAATATG	NA	False	NA	NA	False	NA	NA	NA	86469670	86463448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_86464961_86469015_86469115_86469546
61249	chr12	+	2518	15	FSM	ENSMUSG00000037686.7	ENSMUST00000079400.6	2722	15	202	2	-5	-2	multi-exon	FALSE	canonical	2	5	junction_3	6.52467842666814	30	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTTTGGCCTGGATGG	NA	False	NA	NA	False	NA	NA	NA	112073314	112093991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_112073408_112078625_112078735_112079414_112079527_112080813_112080940_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
61250	chr12	+	907	8	NIC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-8	69	combination_of_known_splicesites	FALSE	canonical	1	16	junction_5	299.633790089278	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGTGAAAAAGCCCATT	NA	False	NA	NA	False	NA	NA	NA	59060231	59074742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59071788_59071900_59073640_59073700_59074522
61251	chr8	+	3175	2	Intergenic	novelGene_1694	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATCTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	89771473	89781770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_89772253_89779374
61253	chr7	-	1152	9	NNC	ENSMUSG00000030751.19	novel	1201	10	NA	NA	-10	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1223.00603023861	2	63	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTTTCACCACCTAT	NA	False	NA	NA	False	NA	NA	NA	113875312	113863859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113864192_113865668_113865780_113866355_113866436_113868949_113869086_113870212_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
61254	chrX	-	1550	12	NIC	ENSMUSG00000031171.12	novel	1656	13	NA	NA	16	-6	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	87.0699348438886	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTACATATGCACGTTGC	NA	False	NA	NA	False	NA	NA	NA	8118618	8106664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
61255	chr2	+	1117	11	NNC	ENSMUSG00000027222.15	novel	1392	11	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	69.3025252065175	18	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	NA	False	NA	NA	NA	92205606	92211562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_92205702_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
61256	chr2	+	1813	16	NNC	ENSMUSG00000027649.16	novel	2442	16	NA	NA	61	-533	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	149.205838432088	12	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGGTATCCTGGGGCT	NA	False	NA	NA	False	NA	NA	NA	157579381	157733001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661488_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
61257	chrX	-	1386	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	114	-2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	56.3197866415254	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACACTGCCCAGGTCTT	NA	False	NA	NA	False	NA	NA	NA	101898108	101891246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896539_101898002
61258	chr9	-	1719	7	ISM	ENSMUSG00000008429.9	ENSMUST00000008573.9	2781	8	18548	61	18426	-61	3prime_fragment	FALSE	canonical	3	81	junction_2	18.8480768249708	84	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTATAAAATATGCTGGA	NA	False	NA	NA	False	NA	NA	NA	25044568	25019488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_25020302_25020735_25020851_25021706_25022031_25025116_25025240_25036167_25036320_25041831_25041946_25044490
61259	chr4	-	1915	1	Intergenic	novelGene_1961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCAGGCATGGTGCTACA	NA	False	NA	NA	False	NA	NA	NA	129090429	129088514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_129088500_129090400
61261	chr7	-	2471	9	Fusion	ENSMUSG00000035458.16_ENSMUSG00000055809.8	novel	912	8	NA	NA	-83	-7	intron_retention	FALSE	non_canonical	0	0	junction_6	8.9154010005159	70	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAGAAGGAACTGTGT	5133	False	NA	NA	False	NA	NA	NA	4527311	4521313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525296_4526859_4526936_4527012_4527142
61264	chr16	+	2083	13	FSM	ENSMUSG00000022702.17	ENSMUST00000120532.9	2044	13	-39	0	-39	0	multi-exon	FALSE	canonical	2	5	junction_1	35.0186458269813	29	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCTGATTATCCAGA	NA	False	NA	NA	False	NA	NA	NA	18695747	18746761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18695965_18713523_18713587_18715203_18715315_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
61266	chr9	+	3436	12	NIC	ENSMUSG00000034973.17	novel	8933	37	NA	NA	-1698	-3922	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	4.78807057536862	3	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCCAAGACTTAATAGGCA	NA	False	NA	NA	False	NA	NA	NA	86383998	86403216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_86384037_86385045_86385155_86386229_86386351_86388247_86388368_86388457_86388573_86389556_86389791_86394610_86395233_86395877_86396153_86397310_86397464_86399019_86399118_86400206_86400467_86401925
61267	chr16	-	804	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	157	5	-28	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	596	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAACCTTGAGTAGATCTA	NA	False	NA	NA	False	NA	NA	NA	94171396	94165310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
61268	chr9	+	2713	20	FSM	ENSMUSG00000038775.15	ENSMUST00000051386.13	2909	20	3	193	3	0	multi-exon	TRUE	canonical	2	4	junction_1	8.09945109456443	27	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTGTGGCACGTGTGCC	4710	False	NA	NA	False	NA	NA	NA	118881848	118900394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_118881897_118886850_118886923_118887072_118887148_118887378_118887585_118889412_118889522_118890544_118890656_118890962_118891163_118891509_118891589_118891673_118891773_118892315_118892452_118892669_118892771_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
61269	chr6	-	3267	9	NNC	ENSMUSG00000036667.15	novel	3342	9	NA	NA	5	-16	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	3.903123748999	7	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGAGAGGTAAAAAATTAG	NA	False	NA	NA	False	NA	NA	NA	42669988	42646891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_42647258_42650312_42650573_42651975_42652314_42653724_42653965_42654263_42654478_42655003_42655102_42655359_42656355_42663258_42663893_42669866
61270	chr17	-	1908	5	FSM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	305	10	73	-5	multi-exon	FALSE	canonical	3	316	junction_4	16.1458198924675	175	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGCTTTTGCTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	27842164	27798365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
61271	chr8	-	3010	2	ISM	ENSMUSG00000045246.12	ENSMUST00000061828.10	3806	3	2339	12	2005	-12	3prime_fragment	FALSE	canonical	2	3	junction_1	0	10	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTAACCTTTTGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	120360080	120350604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_120353159_120359624
61272	chr6	+	3433	6	ISM	ENSMUSG00000052852.9	ENSMUST00000121469.2	3924	7	48819	34	48483	-34	3prime_fragment	FALSE	canonical	3	27	junction_5	3.79473319220206	8	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAAGTCTTAACATTT	3503	False	NA	NA	False	NA	NA	NA	71733363	71787660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_71733421_71738348_71738426_71750171_71750293_71757705_71757820_71772130_71772309_71784774
61273	chr10	+	1850	4	NNC	ENSMUSG00000061759.16	novel	5044	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	90.5428075553216	1	83	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	4382626	4405140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4382712_4384827_4384934_4389491_4389722_4403711
61275	chr5	+	1804	2	FSM	ENSMUSG00000036599.11	ENSMUST00000124142.2	766	2	47	-1085	47	-486	multi-exon	FALSE	canonical	3	9	junction_1	0	177	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCATTCCTGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	140491376	140510993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_140491483_140509295
61276	chr18	-	2500	2	NNC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	56	-70	intron_retention	FALSE	canonical	0	0	junction_1	0	3	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCCAGATGAAGAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24153811	24151097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24153555_24153768
61281	SIRV1	-	1137	4	NNC	SIRV1A	novel	1300	4	NA	NA	-1	-17	intron_retention	FALSE	non_canonical	0	0	junction_2	2470.17682677892	1	56	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGACGTAGAGGCATTAC	NA	False	NA	NA	False	NA	NA	NA	10367	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6789_7674_7815_10282
61283	chr7	-	2223	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	6	12	6	-12	multi-exon	TRUE	canonical	3	20	junction_1	0	59	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAAAATTGACTCCTGCG	NA	False	NA	NA	False	NA	NA	NA	79392822	79385716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79387659_79389912_79390029_79392657
61285	chr6	-	2563	9	FSM	ENSMUSG00000030321.16	ENSMUST00000184428.6	2384	9	-17	-162	-17	-5	multi-exon	FALSE	canonical	1	3	junction_5	2.36841191518705	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTGCTCGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	115815390	115787694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115788195_115789154_115789212_115791461_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
61286	chr10	+	1607	4	Antisense	novelGene_ENSMUSG00000020108.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACCCTCTCGCACCTCC	NA	False	NA	NA	False	NA	NA	NA	59785490	59787618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_59785933_59786042_59786852_59787138_59787398_59787521
61287	chr14	+	1797	7	Fusion	ENSMUSG00000114619.2_ENSMUSG00000094151.2	novel	1761	5	NA	NA	-110814	-339	multi-exon	TRUE	canonical	0	0	junction_1	11.0704812702771	1	71	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTCTTCACTCTTAAGAA	NA	False	NA	NA	False	NA	NA	NA	42915270	43045106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_42915598_43034798_43034871_43037347_43037480_43038207_43038371_43039360_43039493_43040175_43040358_43044317
61288	chr18	+	734	6	NNC	ENSMUSG00000002477.6	novel	858	4	NA	NA	13	16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	934.006552439543	9707	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTGTCTGTTGATTGT	2	True	NA	NA	False	NA	NA	NA	10617808	10627971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_10617927_10623630_10623708_10624864_10625021_10625560_10625574_10626825_10627018_10627793
61292	chr15	+	1001	10	NNC	ENSMUSG00000056851.15	novel	1463	15	NA	NA	31	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	222.079064999633	1	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAGATGGACTGGAG	6117	False	NA	NA	False	NA	NA	NA	102383081	102407305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102383127_102387050_102387183_102391594_102391724_102392590_102392676_102395522_102395565_102396648_102396713_102398186_102398243_102399068_102399239_102406923_102407077_102407180
61293	chr2	+	925	1	Intergenic	novelGene_2764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAATATCCAATCAAAAA	NA	False	NA	NA	False	NA	NA	NA	162798810	162799735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_162798800_162799700
61294	chr10	+	3303	6	NIC	ENSMUSG00000019826.12	novel	2844	7	NA	NA	4	-268	intron_retention	FALSE	canonical	3	58	junction_5	15.7530949340122	1	184	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTTTTGCCCCTCAGAG	NA	False	NA	NA	False	NA	NA	NA	41326426	41341302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41332612_41338274_41338357_41340272
61295	chr9	+	1235	4	Antisense	novelGene_ENSMUSG00000032062.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGGTTTGCGCATTTCC	NA	False	NA	NA	False	NA	NA	NA	50650992	50657815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_50652049_50652594_50652663_50653562_50653603_50657744
61296	chr9	+	727	4	NNC	ENSMUSG00000032383.8	novel	892	5	NA	NA	51	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1040.70179312915	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATAGCTTGGGTGTGGG	1625	False	NA	NA	False	NA	NA	NA	65967563	65973899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65967683_65970264_65970365_65972768_65972954_65973576
61300	chr1	-	2701	5	FSM	ENSMUSG00000066595.10	ENSMUST00000194917.6	3029	5	318	10	318	-7	multi-exon	FALSE	canonical	2	14	junction_1	10.0591997693654	32	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTGCTAATTTTATATGT	NA	False	NA	NA	False	NA	NA	NA	190743790	190738053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_190740408_190740564_190740633_190741745_190741861_190743384_190743491_190743732
61301	chr19	+	2092	7	Fusion	ENSMUSG00000090840.3_ENSMUSG00000042729.12	novel	1204	11	NA	NA	-262	-136	intron_retention	FALSE	canonical	3	1028	junction_2	84.6747043428883	1	106	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGCAGGACAATCAGATG	2386	False	NA	NA	False	NA	NA	NA	8714613	8718452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8717329_8717459_8717517_8717765
61302	chr1	-	784	1	Antisense	novelGene_ENSMUSG00000026554.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTTCTGGCCTCCCTG	NA	False	NA	NA	False	NA	NA	NA	172006864	172006080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_172006100_172006900
61304	chr6	-	1748	13	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-6	123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	100.281374973953	1	70	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCTAAATGTAATAGTTA	NA	False	NA	NA	False	NA	NA	NA	112673615	112597668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112597866_112621548_112621709_112626555_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652723_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
61305	chr1	-	895	7	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2500.70481731318	4	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16174626	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171584_16171950_16172161_16172713_16172816_16172915_16173054_16173391_16173559_16173733_16173909_16174588
61306	chr14	+	3843	2	ISM	ENSMUSG00000035095.12	ENSMUST00000121288.2	4231	4	15487	38	15472	-38	3prime_fragment	FALSE	canonical	2	8	junction_1	0	5	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTGTTAGAAAAAGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	63689329	63702909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_63690089_63699825
61307	chr17	+	1058	4	NIC	ENSMUSG00000013766.12	novel	1142	3	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	215.629826838084	709	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	35295821	35297780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35295936_35296110_35296183_35296812_35296939_35297034
61308	chrX	+	1661	6	Antisense	novelGene_ENSMUSG00000087174.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	384	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCTGGCATCCTGAACAC	NA	False	NA	NA	False	NA	NA	NA	104086601	104113696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_104087718_104091514_104091616_104110363_104110483_104112068_104112232_104113213_104113281_104113601
61311	chr14	-	1436	8	NIC	ENSMUSG00000022177.10	novel	1587	10	NA	NA	165	-14	intron_retention	FALSE	canonical	3	8	junction_3	162.036906856659	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATTGTGCCTTAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	54791653	54779255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54779909_54781235_54781367_54781661_54781808_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
61312	chr9	-	1341	6	NNC	ENSMUSG00000031922.13	novel	2262	10	NA	NA	23	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.219365736009	34	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTAACAGCCAGCTAACAA	NA	False	NA	NA	False	NA	NA	NA	13738380	13719098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719653_13728200_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
61315	chr5	+	2039	5	NNC	ENSMUSG00000059991.8	novel	2536	5	NA	NA	496	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	76.4832498002013	97	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCTTTGAGCTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	144483207	144494283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_144483294_144484928_144485150_144490209_144490455_144492106_144492287_144492976
61317	chr5	-	3393	9	ISM	ENSMUSG00000032690.17	ENSMUST00000053909.13	3869	11	3826	6	3826	-3	3prime_fragment	FALSE	canonical	0	0	junction_2	0.82915619758885	16	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGCCCTGACTGTCCT	9067	False	NA	NA	False	NA	NA	NA	120884092	120868403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_120870024_120871478_120871633_120873044_120873284_120874061_120874250_120876359_120876643_120876734_120876909_120879213_120879359_120881109_120881349_120883741
61320	chr10	-	4525	6	Antisense	novelGene_ENSMUSG00000019996.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	65	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTATAGCCATCAGACGCT	NA	False	NA	NA	False	NA	NA	NA	20127622	20106547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20106626_20109111_20109191_20121013_20121177_20122340_20125147_20126109_20126225_20126338
61321	chr8	-	2816	1	NIC	ENSMUSG00000086770.2	novel	406	2	NA	NA	43	-374	mono-exon	FALSE	NA	NA	NA	NA	NA	12	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAGGGTCACTAAATC	NA	False	NA	NA	False	NA	NA	NA	12965715	12962899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_12962900_12965700
61322	chr5	-	3050	5	ISM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	34	13302	21	12462	intron_retention	FALSE	canonical	3	7	junction_4	6.87386354243376	6	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAGGTGTAGTTACCGAC	9956	False	NA	NA	False	NA	NA	NA	122492262	122476872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606
61323	chr8	+	1989	7	FSM	ENSMUSG00000031520.7	ENSMUST00000033919.6	2449	7	-187	647	-187	-647	multi-exon	FALSE	canonical	3	36	junction_4	8.69386757049665	62	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTATGAAGTTCAGTCTT	834	False	NA	NA	False	NA	NA	NA	54530453	54639484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_54530961_54609992_54610195_54612327_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
61324	chr17	-	1294	9	NIC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	-2	-100	intron_retention	FALSE	canonical	3	143	junction_4	13.5439100705815	13	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACTGATAAAAAATAACTC	NA	False	NA	NA	False	NA	NA	NA	25459100	25453390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25453697_25453781_25453864_25453953_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
61325	chr17	+	2516	10	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	1928	-27	intron_retention	FALSE	canonical	0	0	junction_1	19.4257052559581	1	83	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAATTAAATGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	57184430	57195877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57184619_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
61326	chr4	+	2520	18	ISM	ENSMUSG00000028763.19	ENSMUST00000171332.2	14176	97	-12	53748	-12	-12016	5prime_fragment	TRUE	canonical	2	11	junction_14	7.47915210855989	18	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACATCGACGCTTCCCGA	NA	False	NA	NA	False	NA	NA	NA	137196101	137244192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152_137239285_137239413_137239559_137239649_137239802_137239940_137240088_137241921_137242086_137242604_137242785_137242868_137243066_137243170_137243319_137244086
61327	chr5	+	1567	13	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	0	494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	286.028116333575	1	75	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGAGGTAGCCCATTTTCAA	NA	False	NA	NA	False	NA	NA	NA	31652095	31668697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658571_31661244_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
61329	chr19	+	1370	13	NIC	ENSMUSG00000025036.8	novel	3205	12	NA	NA	42	3	combination_of_known_junctions	FALSE	canonical	2	5	junction_12	13.4440713906002	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGTCTGCAAACTAAGCT	NA	False	NA	NA	False	NA	NA	NA	46561847	46585340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110_46583308_46585106
61330	chr11	+	1797	9	NIC	ENSMUSG00000056938.17	novel	961	8	NA	NA	26	0	intron_retention	FALSE	canonical	3	67	junction_1	25.8163586704245	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	NA	False	NA	NA	NA	102993959	103003026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
61331	chr19	+	952	9	NNC	ENSMUSG00000071655.13	novel	1291	9	NA	NA	21	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	446.936796426519	11	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTGTATATGCCTGGC	6034	False	NA	NA	False	NA	NA	NA	8849044	8853018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851552_8852497_8852717_8852885
61332	chr6	-	1110	8	FSM	ENSMUSG00000030086.17	ENSMUST00000032172.14	1121	8	3	8	3	-8	multi-exon	FALSE	canonical	3	184	junction_4	25.4486277245203	757	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCATTGGCACCCAGT	NA	False	NA	NA	False	NA	NA	NA	89572631	89360140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
61333	chr7	+	1176	3	NNC	ENSMUSG00000047751.10	novel	1227	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	402.5	2	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	NA	NA	NA	139523701	139525025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139524055_139524105_139524343_139524439
61335	chr10	-	2689	1	ISM	ENSMUSG00000025795.9	ENSMUST00000026902.9	3522	5	63305	4	49171	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	31	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTGTATGTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	121248947	121246258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_121246300_121248900
61336	chr1	+	874	7	NNC	ENSMUSG00000073664.12	novel	15731	55	NA	NA	68	20494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.05018978382222	14	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGTTTGTTCCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	60220038	60245551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_60220098_60220621_60220914_60233662_60233755_60234173_60234336_60239263_60239346_60240022_60240151_60245492
61337	chr2	-	2050	2	FSM	ENSMUSG00000087648.2	ENSMUST00000129713.2	1309	2	6	-747	6	747	multi-exon	FALSE	canonical	3	24	junction_1	0	104	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAACACATGTACCCCTCC	7135	False	NA	NA	False	NA	NA	NA	167996427	167993775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_167995672_167996273
61338	chr15	-	1764	17	FSM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	119	5	-6	-3	multi-exon	FALSE	canonical	3	155	junction_16	22.0368122411115	90	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTCTTGCAGGGGTTGTG	NA	False	NA	NA	False	NA	NA	NA	76396032	76386219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387272_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
61339	chr11	+	2144	13	FSM	ENSMUSG00000039307.17	ENSMUST00000106117.8	2149	13	-2	7	0	-7	multi-exon	FALSE	canonical	3	14	junction_2	4.64503916979059	28	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGAAGTCCCACCAGCAG	NA	False	NA	NA	False	NA	NA	NA	121095258	121113466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121107718_121107903_121108913_121108986_121109368_121109565_121110666_121110750_121111908_121111988_121112061_121112164_121112326_121112417_121113038
61340	chrX	-	1639	1	Intergenic	novelGene_3888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTAACTGGCTGAGCT	NA	False	NA	NA	False	NA	NA	NA	19966745	19965106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_19965100_19966700
61341	chr1	-	1705	9	Antisense	novelGene_ENSMUSG00000034343.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGCGGGGCGGGGACTGC	2731	False	NA	NA	False	NA	NA	NA	91214224	91178043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_91178158_91189986_91190023_91192943_91193004_91202969_91203038_91204105_91204177_91205980_91206039_91207224_91207260_91211668_91211737_91213029
61342	chr17	-	1542	2	NIC	ENSMUSG00000079657.11	novel	1658	8	NA	NA	-747	-3	intron_retention	FALSE	canonical	3	86	junction_1	0	5	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTTTGTGTCATCTGTG	NA	False	NA	NA	False	NA	NA	NA	24749667	24748041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24748945_24749028
61343	chr12	-	1662	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1814	-3	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_11	66.2311254884822	4	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	9486	False	NA	NA	False	NA	NA	NA	110805547	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
61344	chr4	-	1115	9	Antisense	novelGene_ENSMUSG00002075360.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGACAGACACACATTTCT	NA	False	NA	NA	False	NA	NA	NA	117531070	117410162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_117410239_117421815_117422100_117439799_117439912_117446292_117446353_117450265_117450360_117466816_117467001_117472365_117472436_117506501_117506603_117530936
61347	chr2	-	1891	4	Genic_Genomic	ENSMUSG00000074737.3	novel	3304	1	NA	NA	-172698	-523	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCGCTGCGAGGCGGAG	NA	False	NA	NA	False	NA	NA	NA	149846260	149672966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_149672997_149741336_149741890_149772818_149772961_149845094
61348	chr3	-	1246	1	Intergenic	novelGene_3187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTAACACCCTCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	129269616	129268370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_129268400_129269600
61349	chr4	+	1377	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	19	5	2	-5	multi-exon	FALSE	canonical	3	2684	junction_8	233.065676097962	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGATGGTCTCCTCCT	2350	False	NA	NA	False	NA	NA	NA	132262879	132281048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
61350	chr4	+	1960	8	NNC	ENSMUSG00000040533.8	novel	2001	8	NA	NA	24	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5.36808406515884	53	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGCTGTACACCCTGGAT	1515	False	NA	NA	False	NA	NA	NA	130671719	130682769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130671841_130673139_130673487_130677245_130677469_130678599_130678726_130679149_130679567_130680143_130680297_130681646_130681727_130682276
61351	chr15	-	1000	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	-59	0	4	0	multi-exon	FALSE	canonical	3	74	junction_8	311.796586112021	2801	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9612	False	NA	NA	False	NA	NA	NA	76510265	76506308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
61352	chr11	-	370	1	NIC	ENSMUSG00000018697.15	novel	1822	13	NA	NA	3789	-42459	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTGGCTCAGCTATTCT	NA	False	NA	NA	False	NA	NA	NA	84400559	84400189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_84400200_84400600
61353	chr11	-	1224	3	NNC	ENSMUSG00000047260.5	novel	1332	2	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	473	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTGCGCATGGAATTTG	NA	False	NA	NA	False	NA	NA	NA	73067832	73066344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_73067458_73067534_73067578_73067764
61354	chr6	-	1845	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	79	265	24	-265	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	1	118	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	120893735	120870079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
61355	chr15	+	1052	4	Antisense	novelGene_ENSMUSG00000037627.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGGAAGCCTAGGAGGAA	NA	False	NA	NA	False	NA	NA	NA	36092986	36101992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36093144_36098359_36098523_36099748_36100364_36101875
61356	chr10	+	2586	15	NIC	ENSMUSG00000038010.10	novel	2750	4	NA	NA	77	-20	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	19.6657010024654	3	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATCATTTTTCCCTTAA	1277	False	NA	NA	False	NA	NA	NA	58334103	58412046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_58334498_58334990_58335036_58335183_58335242_58343342_58343464_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58380738_58380932_58397722_58397900_58409410_58409550_58411510
61357	chr14	+	2039	8	Intergenic	novelGene_634	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCACACGCACAAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	100111947	100521867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_100112750_100137516_100137676_100179469_100179528_100224858_100225003_100260057_100260605_100347206_100347297_100387167_100387230_100521690
61358	chr10	+	2457	5	ISM	ENSMUSG00000071253.9	ENSMUST00000044977.10	3145	9	16868	65	-4941	-65	3prime_fragment	FALSE	canonical	3	73	junction_1	8.4372685153431	50	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAATTGCCTTCTATGT	NA	False	NA	NA	False	NA	NA	NA	62773279	62782212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_62773319_62773706_62773774_62776820_62776984_62778429_62778499_62780093
61359	chr18	+	1648	9	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	861	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	648.901078266171	1	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAAACTGTTTCTGTAAG	1704	False	NA	NA	False	NA	NA	NA	61689620	61721358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713499_61720486
61362	chr17	-	1060	4	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	2052	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	722.841307311332	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGGTCTAGTATTGTT	9437	False	NA	NA	False	NA	NA	NA	29480860	29469801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29470245_29470301_29470700_29471223_29471293_29480710
61363	chr3	-	2152	1	Antisense	novelGene_ENSMUSG00000038298.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGGAATAAAGGCATCCTG	NA	False	NA	NA	False	NA	NA	NA	96766639	96764487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_96764500_96766600
61364	chr15	+	735	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	2	114	2	-114	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	4	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCAAAGTGGGTCTCATTG	NA	False	NA	NA	False	NA	NA	NA	76788279	76790400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
61365	chr11	+	1576	8	NNC	ENSMUSG00000020515.14	novel	2035	7	NA	NA	-118	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	260.462696612261	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATTGGCATGAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	57994860	58009413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264_58008644_58009213
61367	chr10	+	960	2	Intergenic	novelGene_3432	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTTGTTTCCACTTTGC	4355	False	NA	NA	False	NA	NA	NA	42022543	42023947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_42023044_42023487
61369	chr2	+	1696	10	NNC	ENSMUSG00000015337.6	novel	1063	3	NA	NA	2004	3655	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	83	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATTATTGGAGGGAAAG	783	False	NA	NA	False	NA	NA	NA	30063508	30067736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30064200_30064933_30065081_30065197_30065308_30065718_30065830_30065937_30066003_30066372_30066523_30066639_30066675_30066746_30066836_30067331_30067490_30067596
61370	chr14	+	523	1	FSM	ENSMUSG00000115222.2	ENSMUST00000228007.2	2749	1	2217	9	2217	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATAAGTTGCCTTGGTCC	NA	False	NA	NA	False	NA	NA	NA	55883277	55883800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55883300_55883800
61371	chr10	-	2822	1	Genic_Intron	novelGene_3529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAATGTATCCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	111325429	111322607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Intron_chr10_-_111322600_111325400
61373	chr5	-	891	5	NIC	ENSMUSG00000033467.13	novel	1405	8	NA	NA	-670	-1	combination_of_known_splicesites	FALSE	canonical	1	50	junction_3	241.390762043621	49	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAATGCGGCCAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	109705009	109702579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_109702937_109703138_109703224_109703884_109704048_109704285_109704429_109704866
61374	chr5	-	1103	3	NIC	ENSMUSG00000038690.16	novel	955	4	NA	NA	-25	1	intron_retention	FALSE	canonical	3	4948	junction_2	687	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTTGCCTGGTGTAGTC	8606	False	NA	NA	False	NA	NA	NA	145128363	145120514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_145121459_145123935_145124044_145128312
61377	chr18	+	1687	5	NNC	ENSMUSG00000073568.3	novel	2257	5	NA	NA	10	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	119.357393989648	15	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGTTGAAAGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	47054891	47067280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061618_47065905
61378	chr11	+	2258	5	FSM	ENSMUSG00000020297.11	ENSMUST00000020537.9	2239	5	-19	0	-19	0	multi-exon	FALSE	canonical	1	5	junction_2	2.06155281280883	34	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGACTGTCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	31950443	32009202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_31950597_31951730_31951881_31967650_31967735_32005012_32005124_32007442
61379	chr19	-	1829	12	FSM	ENSMUSG00000059326.8	ENSMUST00000076046.7	1849	12	15	5	15	4	multi-exon	FALSE	canonical	3	33	junction_11	40.804310256849	115	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGCTTTTGTTTTC	9834	False	NA	NA	False	NA	NA	NA	61216841	61212844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962_61215093_61215243_61215365_61215467_61215623_61215709_61215804_61216776
61380	chr15	+	1588	8	NIC	ENSMUSG00000033819.17	novel	2692	11	NA	NA	68	0	intron_retention	FALSE	canonical	3	96	junction_1	13.2772630570353	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	NA	False	NA	NA	NA	76575958	76579119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
61381	chr4	+	2330	2	NIC	ENSMUSG00000028461.13	novel	865	5	NA	NA	89	0	intron_retention	FALSE	canonical	3	342	junction_1	0	2	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	118	False	NA	NA	False	NA	NA	NA	43493505	43495921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_43495256_43495341
61382	chr10	-	2172	5	NIC	ENSMUSG00000040415.16	novel	624	5	NA	NA	-348	-5	intron_retention	FALSE	canonical	3	4	junction_2	60.8373857097755	10	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTATGCCACACCCGTCTT	142	False	NA	NA	False	NA	NA	NA	127030683	127026251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127027423_127028477_127029208_127029598_127029673_127030278_127030343_127030550
61383	chr16	-	1090	10	NNC	ENSMUSG00000022680.15	novel	782	3	NA	NA	1631	13813	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1965	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTAGGTGGCCACCGCCC	NA	False	NA	NA	False	NA	NA	NA	13653314	13637198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13637299_13644744_13644848_13644921_13644987_13645248_13645359_13646866_13646943_13648981_13649034_13649468_13649524_13650199_13650299_13652544_13652657_13652996
61384	chr9	-	1507	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_5	6.15142259969188	58	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATGTATGCGCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	34901124	34889339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34901035
61385	chr6	-	2217	6	FSM	ENSMUSG00000046500.9	ENSMUST00000089295.6	2190	6	-27	0	-27	0	multi-exon	FALSE	canonical	1	3	junction_3	2.56124969497314	26	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGTGATTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	97037401	96808163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_96809534_96820711_96820837_96840720_96840877_96991332_96991449_96996875_96997016_97037091
61387	chr11	-	1810	13	NNC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	329.50324564242	1	96	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCATTTGCAGAGATCTC	NA	False	NA	NA	False	NA	NA	NA	120687217	120680032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680482_120680582_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
61388	chr7	-	873	2	NNC	ENSMUSG00000060591.10	novel	655	2	NA	NA	-307	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	68	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTGTGACTCACTGT	NA	False	NA	NA	False	NA	NA	NA	140536207	140534754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140535045_140535624
61390	chr8	+	826	8	Antisense	novelGene_ENSMUSG00000031529.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	36	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATGAGACCCCCGTCAT	NA	False	NA	NA	False	NA	NA	NA	35336625	35407991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_35336747_35340179_35340378_35340765_35340824_35342367_35342463_35356829_35356923_35357671_35357689_35385527_35385631_35407850
61393	chr2	+	1411	5	NNC	ENSMUSG00000027011.15	novel	2249	6	NA	NA	7	419	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	135.024766246789	3	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTGTGTGTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	78699590	78751060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_78699750_78700800_78701013_78744017_78744151_78749030_78749179_78750301
61395	chr2	+	1356	1	ISM	ENSMUSG00000027254.14	ENSMUST00000094639.10	11825	7	15726	4151	9863	-940	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGCTTTCCCCTTCATT	NA	False	NA	NA	False	NA	NA	NA	121135806	121137162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121135800_121137200
61396	chr2	+	540	1	ISM	ENSMUSG00000027254.14	ENSMUST00000094639.10	11825	7	18642	2051	12779	-657	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCAGTTGCTCCAAGCT	NA	False	NA	NA	False	NA	NA	NA	121138722	121139262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121138700_121139300
61398	chr2	-	1659	5	NNC	ENSMUSG00000027341.11	novel	1551	4	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	39.5632405143967	2	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTGTGTGTTGTTAT	4910	False	NA	NA	False	NA	NA	NA	132089687	132081415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132082547_132085005_132085118_132085938_132086062_132087873_132087995_132089515
61399	chr4	+	937	5	NNC	ENSMUSG00000047613.11	novel	1098	4	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	347.073029058727	18	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTAAAGAAATACTGTGT	NA	False	NA	NA	False	NA	NA	NA	154041718	154046370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_154041780_154044205_154044320_154044987_154045274_154045397_154045450_154045946
61400	chr15	-	692	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	126	-6	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_2	2088.83753556853	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGAAAAACATGGTGTC	-4	True	NA	NA	False	NA	NA	NA	34443660	34440661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_34440751_34441377_34441452_34442780_34442927_34443170_34443224_34443330
61401	chr7	+	1283	3	FSM	ENSMUSG00000036854.15	ENSMUST00000123355.8	1298	3	16	-1	16	0	multi-exon	FALSE	canonical	3	18	junction_1	8.5	125	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGCCTTATGTCTGGGC	NA	False	NA	NA	False	NA	NA	NA	30251964	30254865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30252153_30253686_30253810_30253893
61402	chr3	+	1040	5	ISM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	-19	238	8	-228	intron_retention	FALSE	canonical	3	127	junction_1	372.26830042323	9	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	NA	False	NA	NA	NA	87826850	87830741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241
61403	chr10	-	1638	2	FSM	ENSMUSG00000075266.6	ENSMUST00000216853.2	4143	2	-24	2529	-24	-1089	multi-exon	FALSE	canonical	3	2243	junction_1	0	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTAATGGCTTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	30076512	30073093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_30074576_30076356
61404	chr17	-	1101	1	Genic_Genomic	ENSMUSG00000023883.14	novel	NA	NA	NA	NA	891	172	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAACAAAGTTACCACTTG	NA	False	NA	NA	False	NA	NA	NA	15166199	15165098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_15165100_15166200
61405	chr17	+	968	5	NNC	ENSMUSG00000040658.8	novel	1190	4	NA	NA	61	-6	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	279.760053438657	37	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAGTTGCCTTGGTCAC	NA	False	NA	NA	False	NA	NA	NA	46807697	46810544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802_46809894_46810048
61406	chr4	-	1372	8	Antisense	novelGene_ENSMUSG00000065452.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	79	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCGGCCCGCCGCAGCCG	NA	False	NA	NA	False	NA	NA	NA	40733071	40722533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40722633_40723701_40723843_40723970_40724153_40726103_40726202_40727948_40728225_40731669_40731798_40732073_40732182_40732731
61407	chr6	+	2868	5	NNC	ENSMUSG00000001632.17	novel	4826	13	NA	NA	-10	-614	intron_retention	FALSE	canonical	0	0	junction_2	62.5674635893129	1	84	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCACCTCGACTCTTGTC	309	False	NA	NA	False	NA	NA	NA	113284174	113294800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113284531_113286763_113287370_113291561_113292512_113293488_113294153_113294508
61409	chr14	+	1630	7	NIC	ENSMUSG00000021906.15	novel	2376	8	NA	NA	-12	-51	combination_of_known_splicesites	FALSE	canonical	2	7	junction_5	81.7851181790156	18	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTCTAGGGAATTTAT	NA	False	NA	NA	False	NA	NA	NA	31807821	31825108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31822942_31823052_31824213
61410	chr7	+	2197	14	Antisense	novelGene_ENSMUSG00000037032.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	115	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCCCCCGCCCAGGAGCG	NA	False	NA	NA	False	NA	NA	NA	105208092	105230423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105208260_105208339_105208518_105208651_105208765_105214177_105214265_105214511_105214593_105214739_105214857_105215275_105215386_105215764_105215905_105216289_105216360_105216465_105216547_105216633_105216692_105216784_105216961_105222888_105223626_105230341
61411	chr5	+	1333	10	Antisense	novelGene_ENSMUSG00000040013.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGGCCTTGCCGGAAACG	NA	False	NA	NA	False	NA	NA	NA	135320575	135378864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135320713_135320774_135320965_135366467_135366564_135368333_135368444_135368777_135368970_135373501_135373622_135374942_135375147_135376730_135376821_135378471_135378593_135378791
61412	chr17	-	532	3	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	767	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5465	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCTCCTTGTAACACTC	NA	False	NA	-82	True	NA	NA	NA	45879895	45878696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879042_45879413_45879489_45879783
61413	chr15	+	2157	9	ISM	ENSMUSG00000039704.9	ENSMUST00000090380.6	3210	18	-114	24813	1	7169	5prime_fragment	FALSE	canonical	2	16	junction_6	6.19979838381862	5	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAGGTTATATAAAATAC	33	False	NA	NA	False	NA	NA	NA	9140637	9173118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143
61414	chr5	-	1783	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	-24	10	0	-10	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	1	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAAATACTGGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	143951695	143924736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
61416	chr19	+	1604	10	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	-31	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	6.66666666666667	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCTACTGCCCTGAGG	8007	False	NA	NA	False	NA	NA	NA	6234386	6274251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6234613_6245693_6245811_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6271702_6271776_6272677_6272787_6273550
61417	chr1	-	675	6	NNC	ENSMUSG00000026234.13	novel	3072	12	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3228.63770652577	3	18	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGACTTAATACTT	NA	False	NA	NA	False	NA	NA	NA	86287089	86278219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278555_86284424_86284464_86284678_86284869_86285881_86285946_86286927
61418	chr2	+	2664	2	Genic_Genomic	ENSMUSG00000040495.5	novel	1440	1	NA	NA	-4012	1147	multi-exon	FALSE	canonical	1	3	junction_1	0	14	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTTATTTTATTCATT	NA	False	NA	NA	False	NA	NA	NA	91753581	91760180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_91753627_91757561
61419	chr9	+	1052	6	ISM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	258	-1	252	1	intron_retention	FALSE	canonical	3	246	junction_5	152.663551642165	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGAAGTGTTTTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	26911275	26918631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096
61420	chr11	-	1904	14	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-1644	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	32.0072107260464	291	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	3994	False	NA	NA	False	NA	NA	NA	11832273	11764100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11779084_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11832251
61421	chr7	+	1263	5	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	131.685942681822	43	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCCACTTTGACTCAGCC	NA	False	NA	NA	False	NA	NA	NA	132212367	132308142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_132212560_132243252_132243317_132244215_132244309_132251986_132252079_132307320
61422	chr11	-	1820	4	Antisense	novelGene_ENSMUSG00000019368.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	52	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCGATGCCCTCTTCTGG	NA	False	NA	NA	False	NA	NA	NA	3996398	3992433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_3993758_3993830_3993968_3994058_3994232_3996212
61424	chr9	-	1495	5	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	8	-7	intron_retention	FALSE	canonical	3	701	junction_4	195.430774188714	37	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAGCAATGTGTATGGGT	6300	False	NA	NA	False	NA	NA	NA	57065592	57062331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57064423_57065555
61426	chr5	+	2467	13	NNC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-516	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	50.1671511604512	1	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGCCTTTTTTATTTG	101	False	NA	NA	False	NA	NA	NA	37242197	37282641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_37242403_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
61427	chrX	+	1527	5	FSM	ENSMUSG00000015217.12	ENSMUST00000088874.10	1728	5	172	29	172	-29	multi-exon	FALSE	canonical	3	38	junction_1	352.060630431748	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGTTCTGTATTACAA	NA	False	NA	NA	False	NA	NA	NA	70599767	70604253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_70599844_70601658_70601814_70602038_70602179_70602703_70602879_70603272
61428	chr13	+	1785	6	Antisense	novelGene_ENSMUSG00000021306.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGCCGCACTTCCTCCC	5420	False	NA	NA	False	NA	NA	NA	13534967	13568177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_13535657_13535881_13536008_13538028_13538160_13539632_13539780_13542172_13542395_13567707
61429	chr2	-	1486	7	NNC	ENSMUSG00000026753.6	novel	4115	7	NA	NA	5	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	168.778372100482	1	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGGGTATAAAATAAATT	NA	False	NA	NA	False	NA	NA	NA	39116327	39086841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101049_39116178
61431	chr11	-	1717	1	Intergenic	novelGene_2379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACCTTCACTGTCCCCCTC	813	False	NA	NA	False	NA	NA	NA	62394394	62392677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_62392700_62394400
61432	chr6	-	2282	11	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	43	13860	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	9.96192752432982	27	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTTTTTGGGACATGGT	NA	False	NA	NA	False	NA	NA	NA	113868288	113766438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113766957_113770626_113770842_113773199_113773359_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
61433	chr9	+	1660	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	45	1387	37	-1255	multi-exon	FALSE	canonical	3	208	junction_1	0	396	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTTGCGGTCTCCTTG	232	False	NA	NA	False	NA	NA	NA	108337770	108341750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108337817_108340136
61434	chr4	-	2869	2	FSM	ENSMUSG00000043621.14	ENSMUST00000105811.9	2926	2	44	13	0	-13	multi-exon	FALSE	canonical	2	4	junction_1	0	19	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGATTTGTGTGAAAGC	7393	False	NA	NA	False	NA	NA	NA	138452532	138445861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_138448690_138452491
61436	chr4	-	1131	9	FSM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	-4	3	-4	-1	multi-exon	FALSE	canonical	3	451	junction_8	39.2324801663112	486	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGGGCTTCTTCAACTG	2312	False	NA	NA	False	NA	NA	NA	132056853	132039076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
61439	chr16	-	3434	4	ISM	ENSMUSG00000051980.14	ENSMUST00000063597.14	4534	7	51727	14	51199	-14	3prime_fragment	FALSE	canonical	1	1	junction_3	4.54606056566195	16	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCGCAGTCTAGATTCT	3569	False	NA	NA	False	NA	NA	NA	36330769	36314071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_36316337_36317951_36318076_36320538_36320770_36329955
61440	chr9	+	1475	10	FSM	ENSMUSG00000070284.11	ENSMUST00000047947.9	1429	10	-51	5	5	-5	multi-exon	FALSE	canonical	3	24	junction_1	31.8309578326385	45	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGCCTGGACTGGAAGT	NA	False	NA	NA	False	NA	NA	NA	107926472	107928896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107926620_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
61441	chr14	+	2045	10	Antisense	novelGene_ENSMUSG00002076478.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTACCAGGTGGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	86893321	87204043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_86894024_87066433_87066593_87072412_87072537_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156303_87202879_87202994_87203762
61442	chr12	-	2459	11	FSM	ENSMUSG00000021186.10	ENSMUST00000021603.9	5829	11	-5	3375	-5	-3	multi-exon	FALSE	canonical	3	12	junction_2	1.74355957741627	24	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTTGTGTTTGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	101785319	101716198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_101717163_101723514_101723711_101726959_101727087_101728060_101728184_101731414_101731535_101734651_101734769_101737503_101737627_101775974_101776230_101778412_101778465_101780800_101780856_101784992
61443	chr19	-	1031	5	FSM	ENSMUSG00000024667.13	ENSMUST00000154383.2	927	5	-17	-87	-12	-2	multi-exon	FALSE	canonical	3	49	junction_4	15.1224171348366	385	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCTGGTTGATTTTCTC	NA	False	NA	NA	False	NA	NA	NA	10533132	10527826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
61444	chr19	-	1961	14	FSM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	189	4	0	-1	multi-exon	FALSE	canonical	3	118	junction_10	96.4922046702747	375	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGCTATCAGGAGTTCTT	3629	False	NA	NA	False	NA	NA	NA	5660076	5653045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
61445	chr17	+	1253	9	FSM	ENSMUSG00000024082.6	ENSMUST00000233068.2	2706	9	11	1442	0	228	multi-exon	FALSE	canonical	3	388	junction_6	37.0202647208255	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTTCTATGTGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	79244576	79254039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724
61446	chr12	-	2297	4	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	12	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	82.5967446224258	3	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACATACCATTTAAGAATA	NA	False	NA	NA	False	NA	NA	NA	52053272	52044373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_52045990_52046160_52046657_52051661_52051732_52053157
61449	chr3	+	1335	9	FSM	ENSMUSG00000074207.11	ENSMUST00000004232.10	1492	9	157	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.01817411691241	47	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTTTCTGTGAAACCT	NA	False	NA	NA	False	NA	NA	NA	137983411	137996459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137983498_137985491_137985594_137986134_137986274_137988196_137988285_137988375_137988596_137992452_137992714_137994509_137994646_137995562_137995702_137996295
61450	chr12	-	1756	6	NNC	ENSMUSG00000019235.10	novel	2881	11	NA	NA	-441	33	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	51.909921980292	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCATTTTGGTATGAGCT	650	False	NA	NA	False	NA	NA	NA	85187204	85182374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186369_85187117
61451	chr11	-	2451	17	ISM	ENSMUSG00000052949.15	ENSMUST00000100202.10	4619	19	16727	7194	-8872	-5141	internal_fragment	FALSE	canonical	3	29	junction_7	6.36365411929341	10	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACTGACTTCAGTGTGC	5372	False	NA	NA	False	NA	NA	NA	116287103	116234372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116235132_116236732_116236782_116237858_116237925_116238167_116238338_116238681_116238794_116240159_116240269_116240785_116241025_116245190_116245304_116245461_116245622_116246270_116246343_116249494_116249543_116249761_116249806_116250068_116250136_116250638_116250757_116251079_116251227_116253110_116253200_116287014
61452	chr3	+	2792	18	NIC	ENSMUSG00000058388.15	novel	3327	19	NA	NA	131	-17	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	19.101984534304	28	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAACTTTACTAGAGAAT	NA	False	NA	NA	False	NA	NA	NA	103876034	103914787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_103876104_103876370_103876447_103889201_103889272_103890261_103890421_103893068_103893226_103894742_103894878_103895930_103896091_103898353_103898528_103898635_103898723_103900996_103901219_103903917_103904047_103904748_103905022_103905987_103906120_103906586_103906674_103910762_103910919_103911702_103911799_103912814_103912941_103914303
61453	chr5	-	1777	6	Antisense	novelGene_ENSMUSG00000065191.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTCTGGCGGGGAGGGA	NA	False	NA	NA	False	NA	NA	NA	123510235	123482694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_123482784_123489928_123490012_123494003_123494161_123499250_123499420_123507393_123507516_123509078
61454	chr9	-	670	2	Genic_Genomic	ENSMUSG00000058443.6	novel	768	1	NA	NA	-14	-35	multi-exon	FALSE	canonical	0	0	junction_1	0	39	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCGCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_50255819_50255895
61455	chr17	+	1029	4	ISM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	19192	4	1026	1	3prime_fragment	FALSE	canonical	3	160	junction_1	15.5777619273972	63	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGGTCTGTAGTCTTT	3144	False	NA	NA	False	NA	NA	NA	24041386	24043711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24041675_24042764_24042879_24042989_24043095_24043189
61456	chr10	+	2273	19	ISM	ENSMUSG00000025401.10	ENSMUST00000079590.7	3439	27	1637	2193	1637	-2188	internal_fragment	FALSE	canonical	2	6	junction_6	3.4029761846919	8	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTTTCTAAGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	127542675	127554616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127542794_127542995_127543043_127543222_127543287_127543486_127543586_127546018_127546123_127546242_127546391_127546746_127546866_127546952_127547040_127548452_127548519_127548631_127548737_127549589_127549653_127549853_127550055_127550194_127550422_127550749_127550951_127551118_127551213_127551500_127551651_127551745_127551815_127552156_127552232_127554380
61457	chr9	-	677	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	122	1339	122	-1339	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTGGTTTGATCACAT	NA	False	NA	NA	False	NA	NA	NA	78285885	78284729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78284974_78285256_78285440_78285635
61459	chr18	-	1623	13	NNC	ENSMUSG00000024376.8	novel	540	6	NA	NA	616	28224	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	53.8949595664257	3	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTATACTTTTCAAAATTT	NA	False	NA	NA	False	NA	NA	NA	34139356	33981783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_33982100_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037
61460	chr5	-	1567	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	13	-3	combination_of_known_splicesites	FALSE	canonical	3	6	junction_8	100.752171192486	188	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATATTTGTTTTCTCATC	5349	False	NA	NA	False	NA	NA	NA	143314931	143302247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314853
61461	chr6	-	1569	8	NNC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-29	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	193.124576480613	3	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACATGTTACAGTCAAAA	1997	False	NA	NA	False	NA	NA	NA	83031452	83028266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029745_83030014_83030052_83030309_83030505_83030593_83030799_83030901
61462	chr7	+	534	4	NNC	ENSMUSG00000006333.15	novel	914	4	NA	NA	3	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6904.63527075994	2	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTTGGCTGAACTGGAG	1599	False	NA	NA	False	NA	NA	NA	3707326	3709829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3707448_3707644_3707768_3708731_3708938_3709745
61463	chr1	+	2095	13	NIC	ENSMUSG00000026177.12	novel	2315	15	NA	NA	-31	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	15.1565900591862	17	23	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAATCTTAAAG	6394	False	NA	NA	False	NA	NA	NA	74415784	74425209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74415953_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
61465	chr13	-	1566	9	FSM	ENSMUSG00000021432.16	ENSMUST00000224645.2	802	9	-32	-732	-2	-38	multi-exon	FALSE	canonical	3	22	junction_7	12.4473892845046	21	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAAATGTATTAA	NA	False	NA	NA	False	NA	NA	NA	39144515	39116153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139796_39139913_39144407
61466	chrX	-	2427	5	Intergenic	novelGene_3931	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	3.278719262151	15	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGTGTCAGATTGTGT	NA	False	NA	NA	False	NA	NA	NA	55338549	55322445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_55324058_55325906_55326100_55327526_55327950_55337587_55337708_55338470
61468	chr7	+	711	3	NNC	ENSMUSG00000038646.14	novel	1452	3	NA	NA	-59	-615	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	220.5	3	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGCTTTTGCTGTATGA	NA	False	NA	NA	False	NA	NA	NA	81412738	81418613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81412805_81417274_81417423_81418116
61469	chr1	+	1913	10	NNC	ENSMUSG00000026519.17	novel	3306	23	NA	NA	5215	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	15.1836494255019	33	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGACCCTGCCTCTCATG	NA	False	NA	NA	False	NA	NA	NA	180792846	180802665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180792955_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
61470	chr15	-	839	6	ISM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	58	1871	0	198	5prime_fragment	FALSE	canonical	3	2715	junction_3	172.945540561184	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAACCTGGGACTGTTTC	NA	False	NA	NA	False	NA	NA	NA	75781146	75767924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
61471	chr3	-	1302	5	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	38	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.925225100195	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGGTTATTTTAACAAAA	NA	False	NA	NA	False	NA	NA	NA	90398262	90395692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90396406_90396601_90396901_90397460_90397580_90397854_90397902_90398138
61472	chr17	-	1496	6	NNC	ENSMUSG00000067203.9	novel	1052	6	NA	NA	9	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.338094023943	52	8	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAATCTGAGTCACTAT	3653	False	NA	NA	False	NA	NA	NA	34197792	34193619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34194069_34194453_34194588_34194714_34194990_34196744_34197021_34197227_34197498_34197700
61473	chr7	-	2310	5	ISM	ENSMUSG00000057342.16	ENSMUST00000072836.7	2968	6	1539	-13	-225	-5	3prime_fragment	FALSE	canonical	3	106	junction_2	12.747548783982	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCACCCGACATCCCTTT	7496	False	NA	NA	False	NA	NA	NA	45363092	45359695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683
61474	chr2	+	1074	3	FSM	ENSMUSG00000044991.11	ENSMUST00000061891.11	1076	3	2	0	2	0	multi-exon	FALSE	canonical	3	37	junction_1	20.5	457	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	NA	False	NA	NA	NA	132528852	132592975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_132528902_132533869_132534052_132592132
61475	chr2	-	2414	2	NNC	ENSMUSG00000048486.7	novel	3967	2	NA	NA	3369	-6	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTACATTCCGGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	163311180	163308304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163310338_163310799
61476	chr5	+	2464	2	FSM	ENSMUSG00000029660.11_ENSMUSG00000107164.2	ENSMUST00000201454.2	350	2	34	-2148	1	-432	multi-exon	FALSE	canonical	0	0	junction_1	0	7	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATTTCTAGAATTTCCCC	NA	False	NA	NA	False	NA	NA	NA	149363180	149366614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149363253_149364222
61477	chr9	-	658	1	FSM	ENSMUSG00000040883.19	ENSMUST00000215650.2	1707	1	197	852	-71	-852	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTTCCAAGTGTTGGGGA	NA	False	NA	NA	False	NA	NA	NA	21838655	21837997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21838000_21838700
61478	chr3	-	1086	5	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	504	2	NA	NA	-4	-5	multi-exon	FALSE	canonical	3	9	junction_3	60.3116904090741	45	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTGCAAGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	41447631	41432016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41440150_41440396_41447522
61479	chr10	+	1020	5	NNC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	3440.63337192442	3	51	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	80662519	80665119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80662733_80664076_80664210_80664294_80664468_80664544_80664631_80664704
61480	chr16	+	696	2	NNC	ENSMUSG00000039680.11	novel	702	2	NA	NA	174	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGACGGCTGTATTGC	NA	False	NA	NA	False	NA	NA	NA	91903322	91909111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91903528_91908620
61481	chr17	-	2411	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	-21	13	13	-6	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	1	151	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCACATACCTGTGGTCG	1924	False	NA	NA	False	NA	NA	NA	31856160	31831627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
61484	chr17	-	1385	3	NIC	ENSMUSG00000047407.18	novel	1446	3	NA	NA	341	-24	combination_of_known_junctions	FALSE	canonical	2	8	junction_2	436	1	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTATTTTCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	71156298	71151229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_71152268_71153166_71153394_71156178
61485	chr1	-	1900	2	ISM	ENSMUSG00000016526.9	ENSMUST00000016670.9	3164	3	1967	1005	1872	-1005	3prime_fragment	FALSE	canonical	3	221	junction_1	0	91	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTTTTCATAGGTCAG	2204	False	NA	NA	False	NA	NA	NA	131064110	131056196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_131057983_131063996
61486	chr7	+	3244	5	NIC	ENSMUSG00000035704.18	novel	841	5	NA	NA	-2462	-25	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	49.4690559845243	1	123	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCCTTGTCAGCAAGACA	552	False	NA	NA	False	NA	NA	NA	97033381	97040934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_97036149_97037689_97037796_97039448_97039547_97040095_97040169_97040734
61487	chr3	-	3607	1	ISM	ENSMUSG00000037652.16	ENSMUST00000168645.8	10976	15	66424	0	30134	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATTTTTATTTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	30957126	30953519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_30953500_30957100
61488	chr19	+	449	1	Intergenic	novelGene_1237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCGAAAAAAAAAAAAAAAAA	5837	False	NA	NA	False	NA	NA	NA	25010495	25010944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_25010500_25010900
61489	chr6	-	1218	9	Antisense	novelGene_ENSMUSG00000052738.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	518	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTCATCCCCCAATGACA	NA	False	NA	NA	False	NA	NA	NA	73253876	73225647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_73225737_73233153_73233256_73237455_73237575_73240790_73241004_73241212_73241269_73246295_73246381_73247952_73248106_73252183_73252370_73253661
61490	chr19	+	2576	12	FSM	ENSMUSG00000018820.14	ENSMUST00000099443.11	2573	12	-5	2	-5	-2	multi-exon	FALSE	canonical	3	55	junction_1	33.3877792261314	96	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGTTTTGTCAGGTCTC	NA	False	NA	NA	False	NA	NA	NA	42159027	42180154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_42159108_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
61491	chr10	+	424	5	NNC	ENSMUSG00000000295.14	novel	858	6	NA	NA	-22	2479	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	255.178858842185	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTCTGGGAAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	31189445	31196318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_31189480_31190510_31190633_31192288_31192392_31193677_31193788_31196263
61492	chr9	-	3239	10	NNC	ENSMUSG00000032119.6	novel	5333	10	NA	NA	2911	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.1399468429099	15	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTGAGTGTGGTGGTGC	NA	False	NA	NA	False	NA	NA	NA	44214031	44203737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44204064_44206247_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706
61493	chr17	+	168	2	Antisense	novelGene_ENSMUSG00000024007.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTTCCGGCGGAGTTAA	7770	False	NA	NA	False	NA	NA	NA	29480785	29482933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_29480868_29482847
61494	chr9	+	2653	8	FSM	ENSMUSG00000036611.6	ENSMUST00000040677.6	2723	8	60	10	60	-10	multi-exon	FALSE	canonical	3	10	junction_4	5.11101251999952	9	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTTCAGTCAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	25392902	25515396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_25393193_25393576_25394616_25458847_25458900_25493187_25493299_25497957_25498093_25500730_25500870_25505856_25506052_25514704
61495	chr17	-	482	1	Intergenic	novelGene_156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACCCAAAACGTATTC	966	False	NA	NA	False	NA	NA	NA	36230611	36230129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_36230100_36230600
61497	chr2	+	1586	13	NNC	ENSMUSG00000001855.16	novel	6605	36	NA	NA	-49	334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	37.7664607231808	5	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCTTGCTAAGATGCTG	NA	False	NA	NA	False	NA	NA	NA	31864398	31943200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884582_31943132
61498	chr3	+	1714	12	FSM	ENSMUSG00000068874.14	ENSMUST00000090839.12	1712	12	-2	0	-2	0	multi-exon	FALSE	canonical	3	16	junction_2	7.58314791042644	101	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATCACTCTGTGACG	2652	False	NA	NA	False	NA	NA	NA	94840364	94852069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94840474_94844007_94844065_94844205_94844319_94844518_94844705_94845265_94845387_94846956_94847140_94847358_94847538_94849774_94849854_94849935_94850058_94851149_94851243_94851385_94851505_94851716
61500	chr12	-	1775	6	NNC	ENSMUSG00000019235.10	novel	2881	11	NA	NA	-450	1	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	53.0938791199136	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTCAGTTCTTCTCAGGT	641	False	NA	NA	False	NA	NA	NA	85187213	85182406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186411_85187117
61502	chr5	+	1710	6	Antisense	novelGene_ENSMUSG00000106458.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	75	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGCCCGCCCCCGAGTT	NA	False	NA	NA	False	NA	NA	NA	125354165	125418124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_125354953_125375677_125375793_125377401_125377608_125380148_125380290_125381260_125381419_125417821
61503	chr10	-	1117	2	NNC	ENSMUSG00000112261.2	novel	660	3	NA	NA	7783	561	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	0	77	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTTCAGAAACCCTAAG	9336	False	NA	NA	False	NA	NA	NA	95289303	95280616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95281620_95289189
61504	chr18	-	1327	6	NIC	ENSMUSG00000063889.17	novel	1553	9	NA	NA	0	2	combination_of_known_splicesites	FALSE	canonical	3	6	junction_3	34.342975992188	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTCTTGTGCATTTTA	-12	True	NA	NA	False	NA	NA	NA	3337533	3294479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3295183_3295321_3295417_3299161_3299309_3309645_3309756_3325360_3325479_3337379
61505	chr1	-	772	1	NIC	ENSMUSG00000026014.16	novel	2409	16	NA	NA	4788	-46	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCATCTGCTTGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	60530652	60529880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_60529900_60530700
61506	chr11	-	1571	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	5	45	3	-45	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTTGTGCTGTGTTGA	4216	False	NA	NA	False	NA	NA	NA	96002785	95990196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
61510	chr16	-	1607	1	ISM	ENSMUSG00000035629.20	ENSMUST00000115105.9	5255	20	44787	270	1341	-245	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATGGAGCTTAGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	32643949	32642342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_32642300_32643900
61511	chr7	-	1515	3	ISM	ENSMUSG00000059772.13	ENSMUST00000155012.3	1567	5	3161	-396	3055	-44	3prime_fragment	FALSE	canonical	3	101	junction_1	1	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAGGCAAAACACTCACA	8187	False	NA	NA	False	NA	NA	NA	126291756	126289893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126290828_126290910_126291228_126291492
61512	chrX	+	1810	1	Antisense	novelGene_ENSMUSG00000079349.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCTGCAAACAGCTAGTT	3742	False	NA	NA	False	NA	NA	NA	153836055	153837865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_153836100_153837900
61513	chrX	+	2315	1	Intergenic	novelGene_4001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAAGACAAGTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	104135231	104137546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_104135200_104137500
61514	chr2	-	2233	8	NIC	ENSMUSG00000068290.12	novel	1238	9	NA	NA	88	0	intron_retention	FALSE	canonical	0	0	junction_6	137.869355491616	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCTTGTTGTTTGTAGA	NA	False	NA	NA	False	NA	NA	NA	130506491	130495954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130505475_130506394
61515	chr5	-	1043	1	NIC	ENSMUSG00000045102.13	novel	2814	25	NA	NA	981	-65704	mono-exon	FALSE	NA	NA	NA	NA	NA	11	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGCATAAGAAATAAGACTG	NA	False	NA	NA	False	NA	NA	NA	34325789	34324746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34324700_34325800
61516	chr3	-	1186	6	NIC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	18	-5	intron_retention	FALSE	canonical	3	7	junction_1	156.681077351415	6	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGAGCACACTGATCCTG	1256	False	NA	NA	False	NA	NA	NA	95041304	95037044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95037274_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040940_95041155
61518	chr2	+	1485	7	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27251	-5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	62.2807264640425	264	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGTGTGGTGGTATACC	2635	False	NA	NA	False	NA	NA	NA	60214617	60242918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_60214668_60221003_60221204_60224249_60224969_60241980_60242062_60242190_60242353_60242508_60242576_60242712
61519	chr10	+	1592	6	NNC	ENSMUSG00000019923.15	novel	1834	8	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	448.799286986956	1	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	NA	False	NA	NA	NA	72490711	72510796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492211_72492877_72493018_72493097_72493221_72509797
61520	chr5	-	483	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	59	698	2	-10	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	41	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGCAAGAAGTATAACCTG	NA	False	NA	NA	False	NA	NA	NA	117425631	117421416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
61521	chr7	+	1794	4	NNC	ENSMUSG00000030532.7	novel	454	3	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	50.0399840127872	363	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCAAGGCTCTCCAGAAG	NA	False	NA	NA	False	NA	NA	NA	79992863	79996450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79992998_79993286_79993343_79993463_79993834_79995216
61522	chr1	+	1143	1	NIC	ENSMUSG00000033952.15	novel	6072	27	NA	NA	4326	1598	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGACCATGTTTTATGGGC	NA	False	NA	NA	False	NA	NA	NA	139415589	139416732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_139415600_139416700
61523	chr17	+	2104	12	NNC	ENSMUSG00000007603.10	novel	2025	13	NA	NA	-203	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	86.7340382343043	1	121	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTCTCCTTG	9997	False	NA	NA	False	NA	NA	NA	57072530	57077090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57072793_57073781_57074289_57074632_57074675_57074782_57074913_57075010_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
61524	chr5	-	1470	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	2	-1	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	107.781146357812	386	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTGTTTTCTCATCAT	5316	False	NA	NA	False	NA	NA	NA	143314964	143302245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314853
61525	chr11	+	461	1	Genic_Genomic	ENSMUSG00000034209.5	novel	NA	NA	NA	NA	-201	-837	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTGGACGGCAGATCCCA	NA	False	NA	NA	False	NA	NA	NA	5008764	5009225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_5008800_5009200
61526	chr17	-	1200	9	FSM	ENSMUSG00000024033.11	ENSMUST00000024832.9	1191	9	-11	2	-11	-2	multi-exon	FALSE	canonical	3	52	junction_8	7.5	282	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGAGCCTCTGATGTCGCT	NA	False	NA	NA	False	NA	NA	NA	31496368	31473994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31492498_31492613_31496175
61527	chr2	-	2307	1	NIC	ENSMUSG00000034800.16	novel	4912	6	NA	NA	-18	-5454	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGGCACACTTGGGAAG	NA	False	NA	NA	False	NA	NA	NA	127426615	127424308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_127424300_127426600
61528	chr18	-	4572	1	Antisense	novelGene_ENSMUSG00000024528.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	92	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACCTAAAAATGACACCAG	NA	False	NA	NA	False	NA	NA	NA	52614531	52609959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_52610000_52614500
61529	chr16	+	2586	3	NNC	ENSMUSG00000097290.10	novel	431	3	NA	NA	-3	-2537	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	79	4	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTAGGCTAGTACTGTA	NA	False	NA	NA	False	NA	NA	NA	21613080	21617119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_21613197_21614599_21615607_21615656
61530	chr16	+	1538	4	FSM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	-7	0	-7	0	multi-exon	FALSE	canonical	3	15	junction_3	1.63299316185545	177	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGACAATCATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	94129271	94137794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_94129457_94130204_94130281_94134114_94134183_94136585
61532	chr3	-	2226	1	NIC	ENSMUSG00000068762.12	novel	1153	8	NA	NA	2290	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCCTGTCGTATT	4467	False	NA	NA	False	NA	NA	NA	107848388	107846162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_107846200_107848400
61533	chr11	+	1576	10	NIC	ENSMUSG00000020385.17	novel	1627	11	NA	NA	6	-234	intron_retention	FALSE	canonical	1	3	junction_1	53.166405433005	1	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTAAATACTGTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	51154018	51172357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51154097_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
61534	chr8	-	2038	1	Intergenic	novelGene_1737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTCCTCACTGCCTCCT	9123	False	NA	-1	True	NA	NA	NA	111249015	111246977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111247000_111249000
61535	chrX	-	805	8	FSM	ENSMUSG00000031388.15	ENSMUST00000033763.15	962	8	148	9	32	5	multi-exon	FALSE	canonical	3	198	junction_1	315.02562254068	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGCATAGTGGGGTAT	NA	False	NA	NA	False	NA	NA	NA	72965402	72960487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72960802_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
61536	chr12	+	1911	3	NNC	ENSMUSG00000097929.10	novel	3282	3	NA	NA	-79	-1085	intron_retention	FALSE	canonical	3	11	junction_1	10.5	85	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAGAAGTCAGTGGGAT	NA	False	NA	NA	False	NA	NA	NA	105303172	105349104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105303253_105303488_105303819_105347603
61539	chr7	-	1862	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	-10	46	-4	-43	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	1	107	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTGCTGTAATAAAGGAC	8624	False	NA	NA	False	NA	NA	NA	45480223	45474696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
61541	chr16	+	87	1	Intergenic	novelGene_3840	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211952	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57212000_57212000
61542	chr11	+	3277	13	FSM	ENSMUSG00000090173.9	ENSMUST00000150989.8	3267	13	-26	16	-26	3	multi-exon	FALSE	canonical	0	0	junction_8	1.80277563773199	19	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAAACTGAAAACTAAGT	NA	False	NA	NA	False	NA	NA	NA	62737922	62768272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62738622_62741397_62741569_62743780_62743982_62744090_62744219_62746111_62746235_62748511_62748622_62750665_62750867_62753455_62753578_62758346_62758496_62759837_62759981_62764196_62764356_62765767_62766016_62767449
61543	chr7	-	949	1	NIC	ENSMUSG00000003380.12	novel	899	5	NA	NA	871	-403	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTATGCCCTGGCTGGTGGC	6136	False	NA	NA	False	NA	NA	NA	24670538	24669589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_24669600_24670500
61546	chr16	-	805	6	FSM	ENSMUSG00000023791.19	ENSMUST00000232321.2	818	6	9	4	-3	0	multi-exon	FALSE	canonical	3	63	junction_5	141.720287891325	99	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	31918549	31903237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918472
61547	chr11	-	1415	1	Intergenic	novelGene_2485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAGTCCTGGAATTTAA	4429	False	NA	NA	False	NA	NA	NA	102892722	102891307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_102891300_102892700
61549	chr2	+	868	7	NNC	ENSMUSG00000010911.13	novel	919	7	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	133.735331490556	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTGCTTTTAAATGAGTT	4588	False	NA	NA	False	NA	NA	NA	102904014	102922972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922223_102922809
61550	chr9	-	987	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	15	-107	15	1	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	145	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTGGCTATTTTTTTAT	6992	False	NA	NA	False	NA	NA	NA	50472595	50468117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
61551	chr7	+	2107	8	Antisense	novelGene_ENSMUSG00000030747.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACGGCGCCGAGCGCCG	NA	False	NA	NA	False	NA	NA	NA	98803008	98831918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98803905_98806182_98806387_98807359_98807537_98808042_98808245_98813841_98813911_98814286_98814401_98818908_98819033_98831597
61553	chr7	-	731	7	FSM	ENSMUSG00000053565.11	ENSMUST00000207683.2	647	7	-83	-1	-6	0	multi-exon	FALSE	canonical	3	75	junction_6	1263.25735259641	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTCTCTTGCCTGTA	NA	False	NA	NA	False	NA	NA	NA	28681295	28670796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28681098
61554	chr9	+	1710	4	FSM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	22	3	22	2	multi-exon	FALSE	canonical	3	7	junction_3	3.74165738677394	87	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCCTGGTGTCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	43954702	43959873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_43954774_43957253_43957316_43957910_43958250_43958635
61555	chr18	+	1638	11	NNC	ENSMUSG00000024424.16	novel	483	3	NA	NA	5302	2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	18.5245782678041	50	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGACCTTGCAGGAGC	NA	False	NA	NA	False	NA	NA	NA	12828086	12870109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12828172_12828292_12828620_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
61558	chr4	-	1559	7	NIC	ENSMUSG00000028455.16	novel	1874	10	NA	NA	31	51	intron_retention	FALSE	canonical	3	2352	junction_6	332.009370684356	1	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTCAGTTAGTAGAGAT	-3	True	NA	NA	False	NA	NA	NA	43031405	43028177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43028294_43028937_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
61559	chr6	-	1221	8	NNC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	34	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	191.305184115297	6	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTACAGTCAAAAGTGGG	2060	False	NA	NA	False	NA	NA	NA	83031389	83028261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83031227
61560	chrX	-	1849	13	NIC	ENSMUSG00000009596.10	novel	1933	13	NA	NA	-33	-9	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	5.1010619809343	65	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAACCATGAAAACGTCT	NA	False	NA	NA	False	NA	NA	NA	133377272	133360875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371236_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
61561	chr4	-	1542	1	Intergenic	novelGene_1849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	115	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTTGTCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	52616277	52614735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_52614700_52616300
61562	chr17	-	847	6	Antisense	novelGene_ENSMUSG00000024422.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGGAAAGGAATAAAGAATG	NA	False	NA	44	True	NA	NA	NA	36203521	36198973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36199124_36199246_36199315_36200089_36200170_36200328_36200491_36201804_36201979_36203308
61564	chr17	-	1301	3	NIC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	4250	-90	intron_retention	FALSE	canonical	3	176	junction_1	1	1	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAACTCCATGACTTCT	NA	False	NA	NA	False	NA	NA	NA	25454840	25453380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25453697_25453781_25454434_25454507
61565	chr10	-	2776	9	NNC	ENSMUSG00000009647.14	novel	2872	8	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	38.7941280994946	90	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATCATGGCATCTCGT	5647	False	NA	NA	False	NA	NA	NA	59452497	59282811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_59284681_59287027_59287145_59290767_59290972_59292470_59292632_59302275_59302381_59303447_59303619_59326908_59326979_59452345_59452382_59452454
61566	chr10	+	2143	4	Fusion	ENSMUSG00000097012.2_ENSMUSG00000075297.11	novel	1029	6	NA	NA	12344	1333	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	70	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTGGATGCCCCAGGT	3013	False	NA	NA	False	NA	NA	NA	22161588	22321268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_22161776_22162038_22162303_22162952_22163148_22319771
61568	chr11	+	1843	7	NIC	ENSMUSG00000019461.13	novel	2785	8	NA	NA	13	-10	intron_retention	FALSE	canonical	3	60	junction_1	4.99165971062398	2	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACTTTTTAAACAGTAGA	NA	False	NA	NA	False	NA	NA	NA	69737455	69741852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738850_69739039_69739202_69740837_69741000_69741169
61569	chr2	+	1787	10	NNC	ENSMUSG00000027242.15	novel	2341	13	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	17.7826382244655	15	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATCAAAGAATAAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	121340330	121363265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121362686
61570	chr1	-	2560	3	FSM	ENSMUSG00000044768.17	ENSMUST00000142234.2	639	3	94	-2015	94	-17	multi-exon	FALSE	canonical	1	1	junction_2	29.5	36	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTGATGTCAACATCCAT	NA	False	NA	NA	False	NA	NA	NA	97589307	97571644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_97574087_97582324_97582415_97589279
61571	chr2	+	2214	17	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	81098	15910	-183	-40	internal_fragment	FALSE	canonical	3	12	junction_11	6.60965203320114	23	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGAGGAGGAGGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	49590407	49648880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094_49629213_49631344_49631422_49631950_49632061_49634376_49634479_49634697_49634759_49639310_49639383_49642260_49642366_49647350_49647568_49648821
61573	chr11	-	2028	1	ISM	ENSMUSG00000051790.16	ENSMUST00000056484.10	5003	7	9699	1	3409	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	36	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGTTGTCTCCTGTCG	NA	False	NA	NA	False	NA	NA	NA	69715976	69713948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69713900_69716000
61574	chr10	+	1215	6	NIC	ENSMUSG00000044475.15	novel	1473	11	NA	NA	24	22	combination_of_known_junctions	FALSE	canonical	2	9	junction_5	112.771272937748	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGCTCTTTCCTTA	NA	False	NA	NA	False	NA	NA	NA	59839172	59862183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59861544
61576	chr7	-	2975	9	Antisense	novelGene_ENSMUSG00000108597.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGAGCCCGGAGCA	NA	False	NA	NA	False	NA	NA	NA	57476080	57240339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_57240394_57241225_57241320_57241517_57241586_57415170_57415395_57438614_57438697_57442239_57442384_57461805_57461954_57466021_57466267_57474164
61578	chr4	+	1158	4	NNC	ENSMUSG00000028212.17	novel	432	6	NA	NA	95	-217	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	128.390896181241	5	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAACTGCTTAAAAGTAAAG	909	False	NA	NA	False	NA	NA	NA	11192691	11204458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11192718_11192814_11192912_11192992_11193047_11203477
61579	chr1	+	1143	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027065.12	1168	5	25	0	25	0	multi-exon	FALSE	canonical	3	87	junction_4	3.08220700148449	262	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTCATTCATTTCTAT	NA	False	NA	NA	False	NA	NA	NA	21288823	21300391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299814
61580	chr11	+	1299	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_4	289.614916742905	1063	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTGATTTCTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	96680001	96698974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441_96697591_96698628
61581	chr5	+	968	5	NNC	ENSMUSG00000036639.13	novel	954	5	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	84.8071341338687	1079	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	NA	False	NA	NA	NA	140317677	140323892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_140317711_140318149_140318229_140320209_140320375_140321067_140321214_140323347
61582	chr6	-	3276	20	NNC	ENSMUSG00000030257.17	novel	8887	22	NA	NA	15	9343	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	7.54855015339254	1	168	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATTACGGCTTTGGGG	6468	False	NA	NA	False	NA	NA	NA	112924212	112706642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112706760_112708289_112708471_112712794_112712875_112715843_112716072_112716279_112716386_112718321_112718457_112723852_112723931_112726322_112726377_112731528_112731635_112736709_112736738_112743828_112743914_112748327_112748526_112750558_112750661_112752459_112752682_112753980_112754110_112757833_112758020_112772733_112772797_112793551_112793715_112806399_112806593_112923390
61583	chr11	+	2165	5	FSM	ENSMUSG00000041623.18	ENSMUST00000042227.15	2196	5	22	9	-6	-9	multi-exon	FALSE	canonical	3	41	junction_1	114.630929508575	209	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCACACTTTTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	113575259	113585464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_113575637_113578599_113580048_113582554_113582660_113583220_113583329_113585337
61584	chr2	+	1156	9	ISM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	5107	62	-1420	-62	3prime_fragment	FALSE	canonical	3	1013	junction_7	114.052345438399	285	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCCTGCCCCTTCATCCC	NA	False	NA	NA	False	NA	NA	NA	172847016	172857470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
61585	chr9	-	1025	9	NIC	ENSMUSG00000035934.17	novel	3393	11	NA	NA	0	-1768	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	9.08896996364274	1	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACCGGCCCACCCAAAGA	NA	False	NA	NA	False	NA	NA	NA	36994575	36805705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36865988_36866129_36879673_36879783_36994502
61586	chr18	+	2378	14	NNC	ENSMUSG00000024382.14	novel	2708	15	NA	NA	406	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	49.3707145544938	1	106	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAATTATACCACATTT	NA	False	NA	120	True	NA	NA	NA	32373812	32403189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378952_32379619_32379822_32381215_32381490_32387127_32387319_32390242_32390446_32394354_32394452_32397604_32397719_32398670_32398790_32400216_32400370_32402810
61587	chr11	+	1576	8	NNC	ENSMUSG00000020877.12	novel	1530	8	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	42.7651393410233	390	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAACTGGATCTCAAGTCT	NA	False	NA	NA	False	NA	NA	NA	96920766	96924781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923167_96923580_96923797_96923889_96924056_96924144_96924326_96924491
61588	chr8	+	1278	7	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	-11	-307	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0864912962436	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGAGACAGGGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	85635264	85637783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637480_85637525
61589	chr11	-	1838	11	NIC	ENSMUSG00000025138.15	novel	1727	10	NA	NA	-1	0	intron_retention	FALSE	canonical	2	6	junction_2	26.3286915740224	78	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTGTCCCGATGACT	NA	False	NA	NA	False	NA	NA	NA	120515811	120509199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120509876_120509974_120510117_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
61590	chr17	-	2295	1	NIC	ENSMUSG00000023951.19	novel	1973	8	NA	NA	1320	-2330	mono-exon	FALSE	NA	NA	NA	NA	NA	16	46	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGACTCTCTCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	46334408	46332113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46332100_46334400
61591	chr6	-	1585	5	FSM	ENSMUSG00000029922.16	ENSMUST00000051671.11	1511	5	-74	0	30	0	multi-exon	FALSE	canonical	3	1568	junction_2	1258.9473777724	156	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGTCTGTGTGAAATG	NA	False	NA	NA	False	NA	NA	NA	39397366	39377693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
61592	chr19	+	950	2	ISM	ENSMUSG00000036372.15	ENSMUST00000127878.2	1026	3	2231	4	416	-4	3prime_fragment	FALSE	canonical	3	3159	junction_1	0	33	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGGCCTGCCTCATGTCC	278	False	NA	NA	False	NA	NA	NA	10183812	10185178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10184665_10185080
61593	chr12	+	1799	2	FSM	ENSMUSG00000072905.6	ENSMUST00000110147.3	1766	2	37	-70	37	70	multi-exon	FALSE	canonical	2	7	junction_1	0	5	71	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTCTGAAAAAGAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	87840878	87844699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87841033_87843054
61594	chr9	+	1054	6	FSM	ENSMUSG00000032463.11	ENSMUST00000112911.9	803	6	23	-274	-4	2	multi-exon	FALSE	canonical	3	19	junction_1	126.927695953247	428	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGTTTGGTTTCATGTG	3568	False	NA	NA	False	NA	NA	NA	98868449	98884076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_98868566_98872967_98873025_98874153_98874287_98874565_98874795_98881019_98881070_98883607
61595	chr12	+	1476	11	NNC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	19	-91	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	936.479065436062	3	105	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGTGCTGCTCTCTACTC	3992	False	NA	NA	False	NA	NA	NA	100076431	100089573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085340_100085522_100086245_100086398_100087251_100087411_100089316
61596	chr6	+	543	3	NNC	ENSMUSG00000041477.15	novel	4209	6	NA	NA	-2030	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	29	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTCTGGGGGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	119192474	119197167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_119192568_119194694_119194941_119196963
61597	chr15	-	2092	14	FSM	ENSMUSG00000013611.15	ENSMUST00000013755.12	2696	14	6	598	1	-248	multi-exon	FALSE	canonical	2	5	junction_13	8.19438399112971	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAATAATCATCTCGCCAA	NA	False	NA	NA	False	NA	NA	NA	36555712	36504805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36505617_36507844_36507902_36517744_36517823_36523588_36523703_36525719_36525924_36527830_36527924_36530919_36530990_36534560_36534649_36537653_36537745_36539442_36539554_36545694_36545760_36546925_36547041_36555404_36555480_36555592
61599	chr12	-	879	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221559.2	718	5	-37	-124	2	1	multi-exon	FALSE	canonical	3	163	junction_4	64.161417534216	2268	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTGTCTTTACTGTATA	NA	False	NA	NA	False	NA	NA	NA	71183445	71169945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71183328
61600	chr16	+	1638	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	41	51	41	-51	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	1975	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTCCATGTATTCAT	NA	False	NA	NA	False	NA	NA	NA	4544267	4584555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
61601	chr18	-	927	1	Intergenic	novelGene_4521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAGGATTTTTGGAGA	2796	False	NA	NA	False	NA	NA	NA	34136552	34135625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_34135600_34136600
61602	chr1	-	2561	18	ISM	ENSMUSG00000042349.14	ENSMUST00000161764.8	2867	21	1728	12	1490	-12	3prime_fragment	FALSE	canonical	1	1	junction_15	6.08759587435071	30	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTTCTGTTTTCCTGCA	NA	False	NA	NA	False	NA	NA	NA	131202960	131182350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_131183076_131184623_131184696_131184853_131184961_131185637_131185735_131186918_131187021_131187742_131187783_131191009_131191087_131193375_131193492_131193611_131193688_131197537_131197625_131197754_131197847_131197922_131197988_131198623_131198821_131199499_131199680_131199844_131199956_131201107_131201269_131201377_131201560_131202886
61604	chr7	-	416	1	Intergenic	novelGene_3042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCAGGTGGGATAAAAATCA	5295	False	NA	NA	False	NA	NA	NA	130567838	130567422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_130567400_130567800
61606	chr7	+	1976	1	NIC	ENSMUSG00000055652.15	novel	3403	3	NA	NA	23715	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTGGGTTCTGATTC	NA	False	NA	NA	False	NA	NA	NA	75521903	75523879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_75521900_75523900
61608	chr4	+	3103	3	Intergenic	novelGene_1892	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	71	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCATTATCCTATCAAAAC	NA	False	NA	NA	False	NA	NA	NA	74217937	74221568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_74219188_74219532_74221023_74221205
61609	chr7	+	2221	1	ISM	ENSMUSG00000042978.12	ENSMUST00000056028.11	4109	4	20170	7	1709	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	62	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGATTGTTTGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	125891960	125894181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_125892000_125894200
61610	chr16	+	3126	10	Genic_Genomic	ENSMUSG00000004069.18	novel	487	4	NA	NA	13327	-3549	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAATAAGATGTAATTTT	NA	False	NA	NA	False	NA	NA	NA	4471179	4501607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_4472959_4473413_4473499_4479728_4479779_4486606_4486691_4487728_4487906_4488365_4488439_4493628_4493704_4494801_4494896_4497414_4497854_4501337
61611	chr12	+	1564	5	NIC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	16108	-5	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	14.2653426176871	17	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAAATTGGTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	105727641	105748701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105727856_105732812_105733011_105734788_105735010_105747108_105747268_105747929
61612	chr3	+	2078	2	Intergenic	novelGene_3102	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCCCCCCAAATAGCGA	8264	False	NA	NA	False	NA	NA	NA	37722972	37733131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_37723216_37731296
61613	chrX	-	900	3	ISM	ENSMUSG00000051579.11	ENSMUST00000146583.2	422	4	509	-561	494	-243	3prime_fragment	FALSE	canonical	1	3	junction_2	13.5	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGTGGTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	135072456	135071072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_135071799_135072168_135072271_135072384
61614	chr15	-	1242	2	FSM	ENSMUSG00000053929.18	ENSMUST00000231152.2	1271	2	23	6	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	193	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTATGGAATTTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	76543933	76542338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76543066_76543418
61615	chr7	-	2395	20	ISM	ENSMUSG00000019254.17	ENSMUST00000013886.9	2983	22	4381	6	4062	-3	3prime_fragment	FALSE	canonical	3	198	junction_16	26.7022154558251	102	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCAGTGACTTTGTCTCC	9771	False	NA	NA	False	NA	NA	NA	4500298	4484524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4485158_4485235_4485287_4485377_4485429_4485582_4485688_4485789_4485893_4485971_4486013_4486101_4486185_4486339_4486401_4486472_4486557_4486641_4486733_4486939_4487072_4487448_4487517_4487617_4487771_4488009_4488084_4488187_4488316_4488387_4488462_4489356_4489432_4489509_4489655_4492731_4492892_4500215
61616	chr11	-	1154	2	Antisense	novelGene_ENSMUSG00000087342.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	197	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCGGCACGCGTGCCCGC	NA	False	NA	NA	False	NA	NA	NA	55377540	55360562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_55360626_55376449
61617	chr11	-	2431	1	Intergenic	novelGene_2228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATGAAACAAAGTT	NA	False	NA	NA	False	NA	NA	NA	19799846	19797415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_19797400_19799800
61618	chr17	-	1480	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	320	137	-47	-137	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	188	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTCCTCCTAAGTCCAT	2247	False	NA	NA	False	NA	NA	NA	71309229	71300787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
61619	chr11	+	267	1	NIC	ENSMUSG00000040767.11	novel	821	5	NA	NA	5	-1934	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGCTTCTGCGCATAAGTG	NA	False	NA	NA	False	NA	NA	NA	32155450	32155717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_32155400_32155700
61620	chr11	-	595	4	NNC	ENSMUSG00000058546.9	novel	588	4	NA	NA	-122	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7729.13976814727	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCATAAATAATGCTGCT	6348	False	NA	NA	False	NA	NA	NA	78074025	78071770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78071824_78071979_78072050_78072242_78072343_78073653
61621	chr1	+	1804	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	63	23	-11	-23	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	518	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTATAAATCAGGCTAAAG	1205	False	NA	NA	False	NA	NA	NA	74627521	74631579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
61622	chr8	+	1503	1	Antisense	novelGene_ENSMUSG00000037070.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	85	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACCGGTGACAGCTGCT	5987	False	NA	NA	False	NA	NA	NA	79231919	79233422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_79231900_79233400
61623	chr14	+	935	3	NNC	ENSMUSG00000022010.20	novel	1762	3	NA	NA	-16	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	1127.5	3	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6575	False	NA	NA	False	NA	NA	NA	76741953	76745203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742282_76742688_76742721_76744628
61624	chr4	+	674	6	Fusion	ENSMUSG00000070605.5_ENSMUSG00000063245.12	novel	387	3	NA	NA	-33255	-1733	multi-exon	FALSE	non_canonical	0	0	junction_1	316.5630426945	8	20	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGTACATGGATGTGAT	NA	False	NA	NA	False	NA	NA	NA	146500224	146740331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146500432_146548922_146548988_146550437_146550635_146728889_146728962_146739355_146739414_146740256
61626	chr19	-	1056	8	FSM	ENSMUSG00000034108.7	ENSMUST00000037246.7	1067	8	9	2	9	-2	multi-exon	FALSE	canonical	3	527	junction_5	30.737864703499	1868	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTGTGTCTCTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	4889351	4875395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
61627	chr11	+	1308	14	NIC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_5	266.357036711849	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120563825	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
61628	chr11	+	632	5	NNC	ENSMUSG00000060938.15	novel	526	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	7749.90448328236	97	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	68792405	68795360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_68792451_68793095_68793269_68794004_68794146_68794797_68794901_68795190
61629	chr5	+	1495	13	NNC	ENSMUSG00000029387.11	novel	2672	13	NA	NA	-1400	254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	216.207205142557	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATTTTCCTTAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	124720509	124734904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980_124734137_124734413
61630	chr9	+	2402	2	ISM	ENSMUSG00000032536.13	ENSMUST00000209446.2	736	3	150	9705	150	0	5prime_fragment	FALSE	canonical	3	247	junction_1	0	33	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTAGGTCCTAGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	121283511	121291676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_121283662_121289424
61631	chr15	-	2496	1	NIC	ENSMUSG00000022464.15	novel	3923	15	NA	NA	1796	-2747	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTTCCATGATCTCTGT	NA	False	NA	NA	False	NA	NA	NA	96916036	96913540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_96913500_96916000
61632	chr7	-	875	6	NNC	ENSMUSG00000005447.13	novel	901	6	NA	NA	225	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	159.366746845131	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8828	False	NA	NA	False	NA	NA	NA	24997082	24994473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24996964
61633	chr5	-	1093	4	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-2561	-3	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_3	211.98480029369	572	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATTTGGGGGGGGGTGTGT	5417	False	NA	NA	False	NA	NA	NA	114268840	114261989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114262316_114263592_114263792_114265586_114265831_114268516
61634	chr6	-	1108	2	FSM	ENSMUSG00000043162.8	ENSMUST00000053386.6	3573	2	-17	2482	-17	-2482	multi-exon	FALSE	canonical	3	182	junction_1	0	545	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGATGCTCACAGTTTA	NA	False	NA	NA	False	NA	NA	NA	57669080	57666042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_57666864_57668793
61635	chr15	+	1448	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	8	-1	-2	0	multi-exon	FALSE	canonical	3	86	junction_1	28.3318527024094	287	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7688	False	NA	NA	False	NA	NA	NA	97862117	97868156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
61637	chr8	-	1445	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20992	-698	3562	698	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	170	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAACAAAAGCAAGC	NA	False	NA	NA	False	NA	NA	NA	122650651	122642166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
61638	chr7	+	722	5	NNC	ENSMUSG00000040466.17	novel	1028	5	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	178.797895681129	12	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTCCTCTCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	27147496	27165408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27147571_27158680_27158846_27158987_27159078_27161991_27162121_27165144
61639	chr8	-	1237	5	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTCGGGCGGACACTGCA	NA	False	NA	NA	False	NA	NA	NA	20046215	20016560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20016683_20030544_20030754_20035856_20036158_20039781_20039901_20045729
61640	chr6	-	1112	7	NIC	ENSMUSG00000068250.14	novel	1369	7	NA	NA	4	-8	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	33.0840680019183	28	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAAACACTTCTATTGT	NA	False	NA	NA	False	NA	NA	NA	149090175	149059088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089969
61641	chr19	+	2140	5	Antisense	novelGene_ENSMUSG00000065594.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	118	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGCAGCTGCAGGTCCG	NA	False	NA	NA	False	NA	NA	NA	34788296	34804749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_34789788_34791090_34791218_34798508_34798624_34799112_34799290_34804519
61642	chr10	-	1241	9	NNC	ENSMUSG00000020069.17	novel	1633	9	NA	NA	-1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	174.31289216521	1	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTTGCTACTTTTTAT	5827	False	NA	NA	False	NA	NA	NA	62859627	62851203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853026_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859498
61643	chr5	-	1984	9	NIC	ENSMUSG00000038295.15	novel	1837	10	NA	NA	107	-179	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	7.95986023746648	30	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATTTTCAATCATTGTAA	9401	False	NA	NA	False	NA	NA	NA	24592857	24589357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592654
61644	chr4	-	1878	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	16	-99	intron_retention	FALSE	canonical	0	0	junction_1	57.2972913132614	1	94	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTAGCACCTGCAACAT	1989	False	NA	NA	False	NA	NA	NA	116664787	116661307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116662253_116662335_116662492_116662682_116662852_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116664002_116664664
61645	chr11	-	1543	11	NNC	ENSMUSG00000001123.16	novel	1586	11	NA	NA	45	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	8.42377587546108	77	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGAGATGGCTGGCT	NA	False	NA	NA	False	NA	NA	NA	78875705	78853803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78860539_78860633_78862141_78862254_78863813_78864016_78867438_78867528_78875603
61647	chr5	+	1917	2	FSM	ENSMUSG00000118332.2	ENSMUST00000067145.12	2198	2	265	16	210	-16	multi-exon	FALSE	canonical	3	103	junction_1	0	48	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTTATTTTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	143534725	143550264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143534890_143548511
61649	chr10	+	3019	1	Antisense	novelGene_ENSMUSG00000112082.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTCTCAAAAAAAAATTAAGA	NA	False	NA	NA	False	NA	NA	NA	99286080	99289099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_99286100_99289100
61650	chr8	-	2271	1	FSM	ENSMUSG00000074030.4	ENSMUST00000098312.4	4598	1	2278	49	2278	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTAACATGTTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	125622166	125619895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_125619900_125622200
61651	chr6	-	866	4	ISM	ENSMUSG00000023191.10	ENSMUST00000135127.8	2901	14	12409	104	-2709	-104	3prime_fragment	FALSE	canonical	3	10	junction_2	4.08248290463863	20	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTTCAAATCCCAGCAAC	7189	False	NA	NA	False	NA	NA	NA	124822283	124818272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124818803_124819034_124819176_124821978_124822055_124822164
61653	chr18	+	1457	1	FSM	ENSMUSG00000117949.2	ENSMUST00000236190.2	253	1	-912	-292	-912	292	mono-exon	FALSE	NA	NA	NA	NA	NA	69	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAACCGTGCTTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	80062481	80063938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80062500_80063900
61654	chr9	-	1265	6	NIC	ENSMUSG00000032311.18	novel	2095	9	NA	NA	1000	-570	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	7.03135833249878	19	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAACATCCTGCAACAAG	NA	False	NA	NA	False	NA	NA	NA	55189856	55132085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_55132877_55133899_55134039_55135136_55135223_55143723_55143804_55149344_55149492_55189834
61656	chr14	-	2136	8	Antisense	novelGene_ENSMUSG00000093985.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCGCTTGGCTCCTCGAG	NA	False	NA	NA	False	NA	NA	NA	15463598	15442198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_15442405_15443777_15443900_15447080_15447229_15456670_15456842_15457023_15457137_15457868_15458026_15458975_15459108_15462511
61657	chr5	+	1978	14	NIC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	34	-2	intron_retention	FALSE	canonical	3	48	junction_5	9.83713529281929	5	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAAAACCTTTCCTCCTT	8177	False	NA	NA	False	NA	NA	NA	138170363	138176941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_138170511_138170610_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
61658	chr6	+	1189	9	NNC	ENSMUSG00000040112.10	novel	4162	8	NA	NA	13	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	305.598976397173	2154	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGACTATTGTCTTACGT	NA	False	NA	NA	False	NA	NA	NA	146944274	146972395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146968435_146968570_146972051
61659	chr15	-	2081	4	Antisense	novelGene_ENSMUSG00000115093.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4.96655480858378	19	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGTGTTGTATTATCT	NA	False	NA	NA	False	NA	NA	NA	6074155	6054170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_6055131_6070283_6071075_6073729_6073988_6074083
61660	chr10	-	1167	8	NNC	ENSMUSG00000019942.14	novel	4375	8	NA	NA	2	19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	780.112524588862	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCACTGTGGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	69188738	69174134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_69174427_69176310_69176453_69176544_69176705_69178384_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
61661	chr8	-	1514	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20925	-700	3495	700	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	154	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAACAAAAGCAAGCCT	NA	False	NA	NA	False	NA	NA	NA	122650718	122642164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
61663	chr1	-	1428	13	NNC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	188.2070926459	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	NA	False	NA	NA	NA	91326435	91303552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91325472_91325603_91326372
61664	chr7	+	4139	1	FSM	ENSMUSG00000074071.12	ENSMUST00000208070.2	3984	1	-47	-108	-33	108	mono-exon	FALSE	NA	NA	NA	NA	NA	3	114	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAGACCCCCAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	67925709	67929848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_67925700_67929800
61665	chrX	-	1154	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	-2	10	-2	-10	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	368	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATTCAGCCTGAGCAT	NA	False	NA	NA	False	NA	NA	NA	153999447	153996137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
61669	chr5	-	1973	6	FSM	ENSMUSG00000037339.18	ENSMUST00000065119.15	2009	6	30	6	0	3	multi-exon	FALSE	canonical	3	127	junction_2	26.6187903556867	136	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGCCTAGATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	33786949	33757696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196_33786322_33786680
61670	chr17	-	1368	13	NNC	ENSMUSG00000024012.19	novel	1652	13	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	340.70175740668	1	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGTGCAAGCCTCTTA	NA	False	NA	NA	False	NA	NA	NA	29566470	29551050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29551595_29551684_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
61671	chr17	-	970	1	FSM	ENSMUSG00000024006.18	ENSMUST00000233723.2	820	1	-84	-66	0	66	mono-exon	FALSE	NA	NA	NA	NA	NA	7	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAGATAGCAGCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	29226925	29225955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29226000_29226900
61674	chr3	-	1562	1	Genic_Genomic	ENSMUSG00000081355.2	novel	NA	NA	NA	NA	-28	-36560	mono-exon	FALSE	NA	NA	NA	NA	NA	13	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCGTCATGGGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	94665451	94663889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_94663900_94665500
61676	chr5	+	1488	7	NNC	ENSMUSG00000063646.19	novel	849	3	NA	NA	2843	2664	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	58.8944441824147	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACATAGATACTCA	3224	False	NA	NA	False	NA	NA	NA	37245556	37264883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_37245651_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602
61677	chrX	+	2004	9	NNC	ENSMUSG00000072930.4	novel	2028	7	NA	NA	-17	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4.88460592064498	1	37	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATTGTTATTTCTTTG	1192	False	NA	NA	False	NA	NA	NA	146963702	147007694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_146963812_146980956_146981083_146981801_146981882_146985542_146986246_146986307_146986502_146991761_146991791_146999377_146999460_147000265_147000316_147007063
61678	chr16	+	960	3	Antisense	novelGene_ENSMUSG00000040681.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCGTCGCGGGGGCGGTG	1461	False	NA	NA	False	NA	NA	NA	95922798	95928901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95923533_95928340_95928408_95928742
61679	chr7	+	1389	8	NNC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	50.8723893679076	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATGTCTGCTGTCTAG	NA	False	NA	NA	False	NA	NA	NA	127172554	127182478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127181265_127181386_127181465_127181620_127181690_127181817_127181907
61681	chr2	+	939	5	NNC	ENSMUSG00000017723.12	novel	849	5	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	219.824219548256	3480	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	76	False	NA	NA	False	NA	NA	NA	164404461	164410430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164404778_164405227_164405372_164405976_164406133_164407711_164407859_164410254
61683	chrX	+	1092	3	NIC	ENSMUSG00000079435.10	novel	812	4	NA	NA	-17	2	intron_retention	FALSE	canonical	3	10431	junction_2	1199.5	142	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTGATTGCAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	133486420	133488747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_133487328_133488199_133488323_133488685
61684	chr14	-	1766	9	NIC	ENSMUSG00000006289.15	novel	1308	11	NA	NA	-12	-1	intron_retention	FALSE	canonical	3	62	junction_7	187.571319769308	941	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTAGGTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	51162312	51153143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
61685	chr2	+	799	7	Intergenic	novelGene_2607	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACAGGCAATGTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	33623241	33724580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_33623546_33642321_33642381_33645001_33645058_33692756_33692851_33715058_33715182_33717692_33717824_33724548
61688	chr1	+	1695	7	NNC	ENSMUSG00000026096.15	novel	1868	8	NA	NA	-4	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	56.8587430978444	7	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTGGAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	53352827	53365304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53362183_53362430_53365162
61689	chr10	+	524	6	ISM	ENSMUSG00000000295.14	ENSMUST00000159194.3	819	7	-94	2109	-5	-2109	5prime_fragment	FALSE	canonical	1	1	junction_4	247.246921113287	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAAATGATCCTTCAGGC	NA	False	NA	NA	False	NA	NA	NA	31189373	31202071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31201201_31201272_31202017
61690	chrX	-	2521	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	-27	5	-27	-5	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	79	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGAAAACTTCAATGT	NA	False	NA	NA	False	NA	NA	NA	58179823	58107509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
61691	chr12	-	1485	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	14	13	14	-13	multi-exon	FALSE	canonical	3	215	junction_1	38.7193427113633	847	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTATAAACTTTTTCATG	NA	False	NA	NA	False	NA	NA	NA	56392665	56375100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
61692	chr8	-	1289	4	FSM	ENSMUSG00000031487.6	ENSMUST00000210230.2	620	4	-3	-666	-3	371	multi-exon	FALSE	canonical	2	6	junction_3	38.1255236758206	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAAATGACTCTTGGCT	NA	False	NA	NA	False	NA	NA	NA	27618644	27613861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618524
61693	chr2	-	1454	14	NNC	ENSMUSG00000027423.16	novel	2512	14	NA	NA	-58	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	375.485011795198	8	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTAACCATGTTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	144112762	144092973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112347_144112650
61694	chr4	-	1185	4	FSM	ENSMUSG00000040025.18	ENSMUST00000085181.5	955	4	-4	-226	-4	226	multi-exon	FALSE	canonical	3	30	junction_1	419.072255769283	93	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGTACCACTTAGTATT	NA	False	NA	NA	False	NA	NA	NA	131939406	131913374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_131914259_131938062_131938143_131938742_131938768_131939210
61695	chr16	-	865	5	FSM	ENSMUSG00000022548.15	ENSMUST00000115230.2	1070	5	208	-3	-2	3	multi-exon	FALSE	canonical	2	5	junction_4	68.1725751310598	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTCCTGTGGATTC	8708	False	NA	NA	False	NA	NA	NA	31133414	31115936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133369
61697	chr18	+	1640	1	NIC	ENSMUSG00000024513.17	novel	1290	3	NA	NA	407	-77	mono-exon	FALSE	NA	NA	NA	NA	NA	27	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGCTTTTCTTTCCGTCT	NA	False	NA	NA	False	NA	NA	NA	70714266	70715906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_70714300_70715900
61698	chr9	-	1018	2	Intergenic	novelGene_1178	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTCTCAAAGGGAGCATC	NA	False	NA	NA	False	NA	NA	NA	119058645	119053536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_119053680_119057770
61699	chr13	-	1435	7	NNC	ENSMUSG00000034891.14	novel	1351	6	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	42.6005346862637	228	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCGCCGCCTAGGCAGG	NA	False	NA	NA	False	NA	NA	NA	54914326	54906672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54913637_54913804_54914117
61700	chr5	+	1257	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	0	435	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	81.8183964643649	17	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTGTCAGTATATTC	NA	False	NA	NA	False	NA	NA	NA	123366320	123387025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_123366508_123377604_123377814_123379894_123379997_123384256_123384346_123386355
61701	chr18	+	568	1	ISM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	2934	89	496	-89	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTAAGCCCAAACCAGG	NA	False	NA	NA	False	NA	NA	NA	36896206	36896774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_36896200_36896800
61707	chr18	+	1897	7	FSM	ENSMUSG00000024535.17	ENSMUST00000165032.9	1977	7	82	-2	-15	2	multi-exon	FALSE	canonical	3	19	junction_3	2.70801280154532	37	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTGAGTTTGTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	53378815	53523994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_53378925_53460483_53460568_53473201_53473307_53516141_53516237_53517688_53517722_53518249_53518315_53522588
61708	chr11	-	1112	3	FSM	ENSMUSG00000020736.13	ENSMUST00000124778.8	907	3	9	-214	9	-4	multi-exon	FALSE	canonical	3	183	junction_2	15.5	773	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGGCTTTGGATCTTTGA	NA	False	NA	NA	False	NA	NA	NA	115382668	115381249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115382025_115382096_115382198_115382432
61710	chr2	+	2975	22	NIC	ENSMUSG00000026785.15	novel	3460	21	NA	NA	-15	3	combination_of_known_junctions	TRUE	canonical	3	77	junction_7	19.7860437769826	128	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCCAGGGGTTGTGTAGT	1362	False	NA	NA	False	NA	NA	NA	29967739	29981028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29967812_29969545_29969775_29969937_29970084_29970586_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
61713	chr9	+	1468	4	Intergenic	novelGene_1102	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	12	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAAAAAACCCAAACTCT	NA	False	NA	NA	False	NA	NA	NA	70067183	70104768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_70067351_70069085_70069987_70075661_70075837_70104543
61716	chr18	-	1706	8	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	19	-7618	combination_of_known_splicesites	FALSE	canonical	3	116	junction_7	75.8984283669394	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTTTTTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	70663320	70649377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
61718	chr10	+	808	6	ISM	ENSMUSG00000020056.17	ENSMUST00000020248.16	1052	7	614	149	444	2	3prime_fragment	FALSE	canonical	3	318	junction_3	24.6690088978054	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTTGTTGACCAAATA	NA	False	NA	NA	False	NA	NA	NA	88037568	88081871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
61719	chrX	+	2610	6	NIC	ENSMUSG00000031351.16	novel	3557	19	NA	NA	10415	15914	intron_retention	FALSE	canonical	3	40	junction_5	7.23878442834154	1	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATTTATAAATAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	72042273	72056925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978_72047066_72056045
61720	chr5	-	1256	2	ISM	ENSMUSG00000053134.14	ENSMUST00000202421.2	3056	4	-8	5632	-3	-582	5prime_fragment	FALSE	canonical	3	81	junction_1	0	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCTTGTAACAGTCAGCA	NA	False	NA	NA	False	NA	NA	NA	31684083	31679474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31680606_31683958
61721	chr19	-	2191	9	Antisense	novelGene_ENSMUSG00000065204.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTAGCAGCCTTGGGCTTC	NA	False	NA	NA	False	NA	NA	NA	46363677	46345354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46345388_46354750_46354991_46355646_46355720_46356139_46356609_46356708_46356826_46357672_46357772_46360373_46360544_46360617_46360810_46362879
61723	chr5	+	3154	5	Antisense	novelGene_ENSMUSG00000029640.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTAGTACTTATATTCAC	5035	False	NA	NA	False	NA	NA	NA	146671656	146688539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_146672457_146672562_146674593_146675909_146675996_146677099_146677298_146688499
61724	chr9	+	1049	1	Antisense	novelGene_ENSMUSG00000013076.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCGTGCGCGCGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	14453261	14454310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_14453300_14454300
61725	chr7	+	1543	4	NIC	ENSMUSG00000047473.15	novel	3707	4	NA	NA	0	-2120	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	6.97614984548545	15	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTATGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	29483447	29489217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29484327_29485643_29485729_29487473_29487601_29488765
61726	chr4	+	845	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	53	-2	0	2	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	4090	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTTTATTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	132035986	132038337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
61729	chr17	+	1497	12	FSM	ENSMUSG00000038954.15	ENSMUST00000050630.14	1508	12	13	-2	13	2	multi-exon	FALSE	canonical	3	82	junction_7	13.7774519348892	515	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGGCCTGCTTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	45088051	45430179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45359168_45359280_45430029
61730	chr19	+	1772	7	ISM	ENSMUSG00000025231.18	ENSMUST00000118440.3	2681	10	-64	22918	-42	-7	5prime_fragment	FALSE	canonical	3	63	junction_6	13.5123400391395	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATACCTGACTTGGT	NA	False	NA	NA	False	NA	NA	NA	46385400	46442475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600
61731	chr15	+	1261	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229739.2	1311	2	57	-7	57	0	multi-exon	FALSE	canonical	3	16	junction_1	0	171	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGGTTGTGAGAATG	NA	False	NA	NA	False	NA	NA	NA	78294238	78298213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78294865_78297578
61733	chrX	+	2284	4	FSM	ENSMUSG00000031428.12	ENSMUST00000101227.3	2045	4	17	-256	17	-6	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	25	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTACGGCAGGGGTGT	7922	False	NA	NA	False	NA	NA	NA	135893924	135897121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_135894154_135894455_135894511_135894679_135894820_135895261
61734	chrX	-	2637	8	Antisense	novelGene_ENSMUSG00000031101.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAAACCTTGCCACGTGA	NA	False	NA	NA	False	NA	NA	NA	47250442	47235352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_47235593_47243400_47243497_47243850_47243998_47246293_47246435_47247606_47247756_47247915_47248127_47248278_47248432_47248942
61736	chr1	+	2748	15	FSM	ENSMUSG00000025776.14	ENSMUST00000095075.5	4472	15	295	1429	295	-660	multi-exon	FALSE	canonical	0	0	junction_10	1.24539969815448	4	24	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	17797606	17835139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_17797988_17798817_17799139_17815577_17815697_17816003_17816137_17816954_17817071_17817724_17817826_17819730_17819872_17820488_17820550_17820657_17820725_17820957_17821089_17823061_17823106_17823191_17823265_17826481_17826558_17832335_17832467_17834286
61741	chr17	+	1045	7	NNC	ENSMUSG00000002767.14	novel	1031	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_5	404.152920728446	98	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	NA	False	NA	NA	NA	46957167	46961058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959933_46960035_46960809
61743	chrX	-	3216	4	Antisense	novelGene_ENSMUSG00000042515.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCGCTTTTAAACTGAGATA	NA	False	NA	NA	False	NA	NA	NA	138138018	138118908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_138119058_138132034_138132162_138134425_138134594_138135246
61744	chr5	+	2675	14	FSM	ENSMUSG00000037355.15	ENSMUST00000087864.12	7326	14	-52	4703	-52	4532	multi-exon	FALSE	canonical	1	2	junction_13	2.37342286469869	14	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGGAGGCCAGGGGATAT	NA	False	NA	NA	False	NA	NA	NA	33535987	33572395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_33536347_33536569_33536670_33544999_33545331_33546059_33546181_33546985_33547382_33549087_33549201_33549399_33549529_33559837_33559944_33566152_33566325_33566770_33566894_33568202_33568387_33568904_33569017_33571242_33571418_33572141
61745	chr12	+	1829	3	FSM	ENSMUSG00000021226.8	ENSMUST00000021649.8	2196	3	371	-4	371	4	multi-exon	FALSE	canonical	3	74	junction_2	1.5	53	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGTTGTCCTTCCTTCAA	NA	False	NA	NA	False	NA	NA	NA	84035005	84040651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84035256_84037267_84037471_84039275
61748	chr8	-	1745	10	FSM	ENSMUSG00000031667.17	ENSMUST00000125257.3	2079	10	11	323	7	-323	multi-exon	FALSE	canonical	3	258	junction_9	63.7020456287233	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGCAGGAAAGTAATGC	NA	False	NA	NA	False	NA	NA	NA	91860644	91850519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
61749	chr1	+	432	1	Antisense	novelGene_ENSMUSG00000048234.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTGAGAGGCAGACAAAAG	NA	False	NA	NA	False	NA	NA	NA	39594318	39594750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_39594300_39594800
61750	chr17	+	1980	16	NIC	ENSMUSG00000040828.11	novel	2557	22	NA	NA	8156	-2	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	2.88598144292178	17	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGGGATCAGGTTGCTAA	NA	False	NA	NA	False	NA	NA	NA	56943306	56971452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56943336_56948476_56948591_56954727_56954812_56957742_56957894_56958794_56958891_56959456_56959540_56960579_56960757_56962096_56962187_56962988_56963048_56965072_56965152_56966528_56966582_56967170_56967246_56968241_56968371_56969661_56969846_56970267_56970426_56971033
61751	chr6	+	1536	9	ISM	ENSMUSG00000030347.7	ENSMUST00000202086.4	4107	11	13	13385	0	1128	5prime_fragment	FALSE	canonical	3	101	junction_1	10.2925944251195	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTATAAAGGGCATTAAAG	NA	False	NA	NA	False	NA	NA	NA	126916937	126933245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_126916990_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811
61752	chr16	-	1576	1	Antisense	novelGene_ENSMUSG00000008976.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	69	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAATAATTTGCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	84660657	84659081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_84659100_84660700
61753	chr17	-	892	5	NNC	ENSMUSG00000024048.16	novel	1937	4	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1308.12468346867	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTTAGTTGTTTAGCG	2289	False	NA	NA	False	NA	NA	NA	71309187	71301291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71301438_71301479_71301780_71303104_71303267_71303691_71303891_71309102
61755	chr13	-	1490	4	Antisense	novelGene_ENSMUSG00000114555.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGTCAGCCTCGGTTGG	NA	False	NA	NA	False	NA	NA	NA	36042618	35922435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_35922617_35974078_35974157_35999887_36000557_36042056
61756	chr17	-	1494	2	ISM	ENSMUSG00000085492.8	ENSMUST00000143828.2	781	3	-502	1292	0	-1292	5prime_fragment	FALSE	canonical	3	25	junction_1	0	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAATAAATACTATAGAT	NA	False	NA	NA	False	NA	NA	NA	71905750	71896843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_71897518_71904930
61757	chr1	-	2022	1	Antisense	novelGene_ENSMUSG00000038806.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGGCGACACAGCCATCC	NA	False	NA	NA	False	NA	NA	NA	180680723	180678701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180678700_180680700
61758	chr14	+	1023	2	FSM	ENSMUSG00000097431.3	ENSMUST00000181482.2	2513	2	5	1485	-3	194	multi-exon	FALSE	canonical	2	3	junction_1	0	69	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTTTTTAAAAAAGTAAC	2389	False	NA	NA	False	NA	NA	NA	51107837	51114975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_51108014_51114128
61759	chr12	+	1289	11	NNC	ENSMUSG00000021178.10	novel	1591	11	NA	NA	-22	86	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1052.00479561645	1	81	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCACCCCTGAGGGGCTCT	4012	False	NA	NA	False	NA	NA	NA	100076451	100089423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100076471_100078589_100078644_100079326_100079412_100081096_100081222_100081681_100081865_100082045_100082175_100082957_100083048_100085331_100085522_100086245_100086398_100087251_100087407_100089316
61760	chr1	+	1676	5	NNC	ENSMUSG00000018196.19	novel	3337	4	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	265.822309071304	5	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTCCCGATTGGCCAGT	NA	False	NA	NA	False	NA	NA	NA	143615409	143622511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_143615497_143617385_143617450_143618379_143619462_143620784_143620962_143622245
61761	chr16	+	1057	5	FSM	ENSMUSG00000003531.16	ENSMUST00000151266.8	1086	5	9	20	9	0	multi-exon	FALSE	canonical	3	350	junction_3	38.8546972707291	746	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCTGTGCTACCTAG	NA	False	NA	NA	False	NA	NA	NA	17884275	17889207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887954_17888096_17888741
61762	chr11	-	1252	1	FSM	ENSMUSG00000082087.5	ENSMUST00000122180.2	951	1	-39	-262	-39	262	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCCAAGCCGTGCCACT	5817	False	NA	NA	False	NA	NA	NA	40564722	40563470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40563500_40564700
61763	chrX	-	1618	6	NIC	ENSMUSG00000044348.15	novel	1737	7	NA	NA	18	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	15.8366663158633	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATAGAGAGATTATCCCTA	NA	False	NA	NA	False	NA	NA	NA	135938739	135903533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135933099_135933250_135938678
61764	chr4	+	759	3	NNC	ENSMUSG00000050188.9	novel	943	2	NA	NA	102	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	144.5	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACGTCTGTGCCTGATGC	NA	False	NA	NA	False	NA	NA	NA	125990554	125992373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125990603_125991621_125992019_125992059
61765	chr1	-	1057	7	NNC	ENSMUSG00000026526.15	novel	2636	10	NA	NA	-9	-6521	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	393.151794264421	1	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATATTCGCTTCCTGGGTTC	845	False	NA	NA	False	NA	NA	NA	175453148	175435470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_175435587_175437202_175437385_175439681_175439896_175442302_175442460_175444084_175444206_175446616_175446752_175453016
61766	chr12	+	1241	6	NIC	ENSMUSG00000004788.12	novel	1605	8	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	1	9	junction_4	133.985670875657	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGTTTATTGTTCTGAGC	NA	False	NA	NA	False	NA	NA	NA	85266254	85273272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85271328_85271396_85272776
61767	chrX	-	1223	10	NNC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	224	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	762.335009471995	2	63	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGCTTGTGTGCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	72974123	72965729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971954_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013
61768	chr2	-	1595	1	FSM	ENSMUSG00000074682.5	ENSMUST00000099207.5	3073	1	1465	13	1465	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	86	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTTTCGTATTACTGT	NA	False	NA	NA	False	NA	NA	NA	152255482	152253887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152253900_152255500
61772	chrX	+	778	6	NNC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	26	-4227	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	997.578147314786	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTATGACTAAGCCCTGC	5373	False	NA	NA	False	NA	NA	NA	158155199	158168697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158155359_158160458_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
61773	chr1	+	261	1	Intergenic	novelGene_452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAACTGAGAATTCCGGAT	NA	False	NA	NA	False	NA	NA	NA	134889884	134890145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_134889900_134890100
61774	chrX	-	1445	4	FSM	ENSMUSG00000031118.9	ENSMUST00000114866.2	1232	4	-15	-198	-15	1	multi-exon	FALSE	canonical	3	7	junction_3	34.0978982734518	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTGCTCCGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	51059939	51057570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51058747_51059091_51059163_51059359_51059477_51059858
61775	chr12	+	1189	2	Genic_Genomic	ENSMUSG00000098134.2	novel	1383	1	NA	NA	96	0	multi-exon	FALSE	canonical	0	0	junction_1	0	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCTGGTGTGATCTTTC	NA	False	NA	NA	False	NA	NA	NA	84464065	84465352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_84464149_84464246
61776	chr13	-	3185	1	Intergenic	novelGene_1339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAAATAAATCTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	34300590	34297405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_34297400_34300600
61777	chr5	+	1800	4	FSM	ENSMUSG00000049907.9	ENSMUST00000051937.9	1812	4	-1	13	-1	-4	multi-exon	FALSE	canonical	2	8	junction_1	1.4142135623731	55	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATAAGAACAGACATCTGA	NA	False	NA	NA	False	NA	NA	NA	74355945	74360129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_74356252_74356763_74356821_74357927_74358005_74358769
61778	chr13	-	3026	1	Intergenic	novelGene_1338	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCCTTGGTCATAGTG	NA	False	NA	NA	False	NA	NA	NA	34060920	34057894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_34057900_34060900
61779	chr11	-	1188	10	Antisense	novelGene_ENSMUSG00000065162.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTATCGCGCAGGCGCGG	7863	False	NA	NA	False	NA	NA	NA	106153711	106146979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_106147038_106147670_106147744_106151676_106151747_106152008_106152106_106152248_106152535_106152729_106152863_106152949_106153142_106153243_106153331_106153407_106153507_106153618
61781	chr17	-	2158	1	Intergenic	novelGene_137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGTTCCATCCCTAGTAC	NA	False	NA	NA	False	NA	NA	NA	33187553	33185395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_33185400_33187600
61783	chr19	+	601	4	NIC	ENSMUSG00000038274.14	novel	392	5	NA	NA	0	2	intron_retention	FALSE	canonical	3	11442	junction_1	1225.19776181462	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGACTTCTTATGTTTT	1089	False	NA	NA	False	NA	NA	NA	6107980	6109542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6108032_6108272_6108603_6109173_6109230_6109378
61787	chr8	+	1083	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	31	1514	31	1276	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	3	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGCATTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	57964971	57967519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
61788	chr11	+	2043	6	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	13	5	intron_retention	FALSE	canonical	3	6	junction_4	447.445817948945	1	122	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTAACAAAGGTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	101518780	101526903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524546_101524727_101525613
61789	chrX	+	642	7	NNC	ENSMUSG00000095180.11	novel	893	6	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1462.1975185772	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8534	False	NA	NA	False	NA	NA	NA	36891664	36897308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893592_36893813_36893891_36894500_36894547_36897041
61790	chr13	+	1567	9	FSM	ENSMUSG00000000253.14	ENSMUST00000000260.13	1580	9	13	0	13	0	multi-exon	FALSE	canonical	3	46	junction_4	10.0428768288773	109	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	False	NA	NA	False	NA	NA	NA	45660932	45699858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
61791	chr9	+	1107	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	24	80	24	-80	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGGGTAATGATTTAAA	9593	False	NA	NA	False	NA	NA	NA	64188912	64211994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
61793	chr11	+	823	1	ISM	ENSMUSG00000003119.15	ENSMUST00000147441.8	2605	8	35942	3	14177	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	42	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAGAGAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	98168504	98169327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98168500_98169300
61794	chr5	+	1066	10	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1480.5501813536	6	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCAGCCCTTCCAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	138159358	138162241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138159445_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161616_138161682_138161770_138161872_138161997
61795	chr10	+	1219	2	FSM	ENSMUSG00000095022.9	ENSMUST00000181703.8	1246	2	1	26	1	-26	multi-exon	FALSE	canonical	0	0	junction_1	0	154	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTATTCTGGAGTCATAA	NA	False	NA	NA	False	NA	NA	NA	104021394	104023835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_104021500_104022721
61797	chr3	-	1098	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	20	1231	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	45	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTTCAGGAACAGTT	NA	False	NA	NA	False	NA	NA	NA	53771231	53764011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764303_53764859_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
61800	chr4	-	651	2	FSM	ENSMUSG00000028639.15	ENSMUST00000145976.2	718	2	253	-186	253	0	multi-exon	FALSE	canonical	3	10943	junction_1	0	56	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	NA	NA	NA	119136394	119135177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_119135565_119136130
61801	chr14	+	600	4	NNC	ENSMUSG00000060126.15	novel	890	3	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2501.05755409365	44	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083843_76085538
61802	chr11	+	1282	11	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	-8	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	775.653331070008	1	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAACACTACAACTCCAG	4528	False	NA	NA	False	NA	NA	NA	106146971	106153940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152767_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
61803	chr13	-	2373	7	ISM	ENSMUSG00000021363.15	ENSMUST00000224740.2	2354	13	22368	-1033	-8320	11	3prime_fragment	FALSE	canonical	1	2	junction_2	1.24721912892465	6	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAATTCCTTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	41201567	41178584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_41180039_41183492_41183613_41188229_41188362_41193104_41193254_41195494_41195662_41199494_41199807_41201528
61804	chr12	-	1745	5	FSM	ENSMUSG00000019718.9	ENSMUST00000019862.3	1831	5	22	64	22	-64	multi-exon	FALSE	canonical	3	12	junction_4	3.20156211871642	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCTCATAGAGGTGGG	NA	False	NA	NA	False	NA	NA	NA	72132191	72120265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_72120811_72123917_72124056_72124137_72124261_72126260_72126431_72131422
61805	chr12	-	1411	13	Antisense	novelGene_ENSMUSG00000021115.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCGTAGTACGAACTTC	NA	False	NA	NA	False	NA	NA	NA	106041436	105976595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_105976616_106002796_106002962_106009093_106009151_106017192_106017309_106022056_106022170_106022279_106022371_106024099_106024234_106024833_106024954_106025874_106025934_106028886_106029065_106036780_106036866_106039835_106039937_106041264
61806	chr4	+	3502	1	NIC	ENSMUSG00000028488.16	novel	2286	12	NA	NA	8	-168713	mono-exon	FALSE	NA	NA	NA	NA	NA	6	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAACTGAACAACTTAAAC	NA	False	NA	NA	False	NA	NA	NA	85123713	85127215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_85123700_85127200
61807	chr14	+	1285	9	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-24	-47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	774.9628620134	1	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGCTACCCACCAATG	NA	False	NA	NA	False	NA	NA	NA	21881609	21895540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21887750_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
61808	chr7	-	931	5	NNC	ENSMUSG00000062797.15	novel	2224	5	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	483.991929168246	1030	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	NA	False	NA	NA	NA	89590397	89567895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_89568216_89569280_89569400_89572771_89572924_89585053_89585173_89590176
61811	chr18	+	1632	13	NNC	ENSMUSG00000024404.8	novel	3790	13	NA	NA	57	24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	154.042810607961	1	88	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCACTTGTGACCCACGT	5601	False	NA	NA	False	NA	NA	NA	12261893	12288473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12262031_12268908_12268964_12269749_12269866_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
61812	chr13	+	1080	2	Intergenic	novelGene_1459	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAATGCAATCTCGGAGA	NA	False	NA	NA	False	NA	NA	NA	66950859	66952550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66950925_66951535
61813	chr6	+	2138	11	NIC	ENSMUSG00000045100.12	novel	2076	10	NA	NA	6	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	14.4737693777399	214	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCCTCTTTCACATTGC	NA	False	NA	NA	False	NA	NA	NA	94477319	94581640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_94477439_94484494_94484652_94487732_94487843_94490785_94491023_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
61814	chr2	-	1010	5	ISM	ENSMUSG00000074994.7	ENSMUST00000117237.2	8973	12	46540	3262	46540	-3262	3prime_fragment	FALSE	canonical	3	14	junction_3	2.91547594742265	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCAGCTGCACCCTGCCC	NA	False	NA	NA	False	NA	NA	NA	104600501	104588401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_104588951_104590838_104590935_104593155_104593309_104596303_104596402_104600387
61815	chr2	-	282	1	ISM	ENSMUSG00000074994.7	ENSMUST00000117237.2	8973	12	58796	2824	58796	-2824	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATAAAATAAATTTCTTAC	2072	False	NA	NA	False	NA	NA	NA	104588245	104587963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_104588000_104588200
61817	chr4	+	809	7	Intergenic	novelGene_2045	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	13.1993265821489	135	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	2312	False	NA	NA	False	NA	NA	NA	146289370	146319720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289519_146291416_146291510_146305779_146305915_146312866_146312972_146316363_146316491_146317966_146318083_146319635
61818	chr11	-	2010	9	NIC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	-12	-3	intron_retention	FALSE	canonical	3	103	junction_5	30.2321745000256	503	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGAGTCATTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	69470162	69452587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
61823	chr10	-	1213	6	NNC	ENSMUSG00000040006.14	novel	1525	8	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	130.386502368919	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAAGAATTGCTTTA	7493	False	NA	NA	False	NA	NA	NA	7656651	7643722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_7644350_7646120_7646285_7649061_7649196_7653533_7653635_7655066_7655127_7656524
61824	chr12	-	665	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	0	3	0	-3	multi-exon	FALSE	canonical	3	188	junction_1	77.5127229699888	781	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGATGTTCTCAGTGT	998	False	NA	NA	False	NA	NA	NA	81531884	81405802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
61825	chr16	+	1344	2	FSM	ENSMUSG00000071632.11	ENSMUST00000190776.2	930	2	-70	-344	4	-16	multi-exon	FALSE	canonical	3	177	junction_1	0	188	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTGACACTTTATACC	NA	False	NA	NA	False	NA	NA	NA	18655334	18658894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18655624_18657839
61826	chr5	+	2163	5	Antisense	novelGene_ENSMUSG00000059866.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCGCCCACTCCCAGAGC	2728	False	NA	NA	False	NA	NA	NA	34653433	34671326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_34654294_34656522_34657079_34658249_34658342_34660880_34661171_34670961
61827	chr7	-	1929	12	ISM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	19	1428	2	4	5prime_fragment	FALSE	canonical	3	130	junction_1	29.1238449918179	62	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACACCCACCCCACTGTGT	NA	False	NA	NA	False	NA	NA	NA	16020696	16009397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
61828	chr11	-	1322	1	Antisense	novelGene_ENSMUSG00000006058.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGCGCCGACTGCTCTTC	NA	False	NA	NA	False	NA	NA	NA	95938203	95936881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_95936900_95938200
61829	chr10	+	2129	1	NIC	ENSMUSG00000034707.8	novel	3855	14	NA	NA	1172	29	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGCAAGGTAGGTGCCC	NA	False	NA	NA	False	NA	NA	NA	121217209	121219338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_121217200_121219300
61830	chr7	+	1565	4	ISM	ENSMUSG00000048078.17	ENSMUST00000107165.8	10930	33	661981	15420	77011	-15420	internal_fragment	FALSE	canonical	3	18	junction_2	4.02768199119819	2	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTACACGTACTTAGAGAA	509	False	NA	NA	False	NA	NA	NA	96522858	96542341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_96523739_96534523_96534697_96537880_96538117_96542065
61831	chr11	+	1835	2	Intergenic	novelGene_2244	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	46	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACATGGTGTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	31495817	31499651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_31496002_31498000
61832	chr15	-	585	1	Intergenic	novelGene_3268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAAGTTGGGGTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	25805510	25804925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_25804900_25805500
61834	chr15	+	2284	2	Antisense	novelGene_ENSMUSG00000054115.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAAGGTGCTTCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	9126058	9139776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_9128083_9139516
61835	chr4	-	796	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8555.85572502833	3	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTTTCATTAATAGT	NA	False	NA	NA	False	NA	NA	NA	86775591	86772898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86773193_86774103_86774251_86774386_86774574_86774962_86775097_86775557
61836	chr14	+	2716	7	ISM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	57	6105	42	-7	5prime_fragment	FALSE	canonical	3	175	junction_5	36.4771618047969	7	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGACAGCACCAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	20398384	20415305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330
61837	chr14	-	1739	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	-4	-5	-4	5	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	2105	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGACAATTTTCTTTAA	2338	False	NA	NA	False	NA	NA	NA	55897912	55895345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
61838	chr6	+	544	1	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGCGCCTCCTAGCTGT	8794	False	NA	NA	False	NA	NA	NA	122704767	122705311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122704800_122705300
61839	chr9	-	1196	6	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	34	-434	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.5362701196564	1	41	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCCTGAGAAAGCTTTCA	NA	False	NA	NA	False	NA	NA	NA	114762913	114729939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114730439_114739988_114740053_114743393_114743533_114746048_114746190_114749589_114749768_114762738
61840	chr8	-	2443	9	FSM	ENSMUSG00000031949.18	ENSMUST00000139820.8	2762	9	40	279	40	-279	multi-exon	FALSE	canonical	3	40	junction_8	9.81070843517429	40	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACAGGAGTGAAAGCCG	NA	False	NA	NA	False	NA	NA	NA	112718894	112697775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
61843	chr4	-	1501	9	ISM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	92	1741	11	-1741	5prime_fragment	FALSE	canonical	3	10	junction_8	19.3245310421754	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGCACATCCCCACACT	2004	False	NA	NA	False	NA	NA	NA	131988821	131954722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
61844	chr6	+	1228	4	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	1986	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	69.5317673201729	9	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACGGGCATGTTTTATT	9717	False	NA	NA	False	NA	NA	NA	122501443	122506253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122501470_122502845_122502998_122503745_122503820_122505277
61845	chr17	+	1700	5	NIC	ENSMUSG00000073423.11	novel	1211	7	NA	NA	3	0	intron_retention	FALSE	canonical	3	399	junction_3	20.820662813657	22	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4931	False	NA	NA	False	NA	NA	NA	33848077	33850690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
61846	chr8	-	1166	4	Antisense	novelGene_ENSMUSG00000037296.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	24	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGACCGGCTCGGGATT	NA	False	NA	NA	False	NA	NA	NA	26292565	26275330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_26275745_26282184_26282253_26283704_26283778_26291954
61847	chr9	-	1643	6	NIC	ENSMUSG00000032400.19	novel	1746	17	NA	NA	0	525	intron_retention	FALSE	canonical	3	318	junction_4	9.34665715643834	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGTCTTCAACTGCAG	NA	False	NA	NA	False	NA	NA	NA	64080176	64068127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64068259_64068652_64068724_64069845_64070046_64071628_64072741_64075894_64075947_64080099
61848	chr2	+	3252	23	NNC	ENSMUSG00000002100.16	novel	4134	34	NA	NA	4653	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2.53243423221529	12	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGGTTGATGTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	90953141	90966855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90953364_90954230_90954364_90954725_90954854_90954931_90955038_90955121_90955289_90955603_90955770_90956290_90956398_90956608_90956639_90958997_90959138_90959344_90959426_90961131_90961292_90961717_90961823_90961908_90962098_90962983_90963119_90963197_90963366_90964515_90964605_90964758_90964955_90965134_90965275_90965436_90965597_90965691_90965829_90966080_90966268_90966448_90966487_90966587
61850	chr11	+	1138	2	Intergenic	novelGene_2469	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAATTTAATTTAATTT	NA	False	NA	NA	False	NA	NA	NA	96979822	96982090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_96980370_96981499
61851	chr4	-	2264	10	NIC	ENSMUSG00000028952.13	novel	2218	11	NA	NA	1	-9	intron_retention	FALSE	canonical	2	3	junction_9	16.4572022583682	1	94	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGCACTTGTTCAGTGT	8670	False	NA	NA	False	NA	NA	NA	152112127	152104241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152104578_152104646_152104736_152105000_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152112021
61855	chr4	-	3091	15	Intergenic	novelGene_1840	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	8	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGCTCCAGGCTGCACAG	8966	False	NA	NA	False	NA	NA	NA	48426137	48279834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_48279975_48283224_48283355_48307681_48307848_48382100_48382277_48385102_48385275_48389961_48390136_48392578_48392692_48396232_48396405_48397502_48397666_48398053_48398278_48402830_48402944_48407601_48407811_48415905_48416198_48421445_48422147_48425991
61856	chr16	-	1266	5	FSM	ENSMUSG00000063445.15	ENSMUST00000120056.8	2440	5	-91	1265	-44	-7	multi-exon	FALSE	canonical	3	167	junction_4	12.1243556529821	774	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACAAATGGTTTCCCAAAA	4752	False	NA	NA	False	NA	NA	NA	4537064	4529187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4534160_4534400_4536758
61857	chr12	-	2229	6	ISM	ENSMUSG00000021285.16	ENSMUST00000220486.2	3343	13	11186	-435	11186	-2	3prime_fragment	FALSE	canonical	3	47	junction_4	8.38093073590279	35	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGAGTCCTTTGAGTC	9731	False	NA	NA	False	NA	NA	NA	111800226	111794892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111795818_111796688_111796889_111797893_111798061_111798736_111798871_111798942_111799081_111799561
61859	chr11	-	1478	9	NIC	ENSMUSG00000042709.16	novel	949	8	NA	NA	-18	415	combination_of_known_splicesites	FALSE	canonical	3	12	junction_8	150.736473273724	19	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTTTTCATTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	60307895	60291888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307576
61860	chr16	+	1769	7	FSM	ENSMUSG00000022969.14	ENSMUST00000023691.12	1850	7	77	4	-8	-4	multi-exon	FALSE	canonical	3	23	junction_1	1.63299316185545	47	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGGGGGTTTGTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	91203199	91222718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91203261_91204505_91204630_91208770_91208929_91211500_91211668_91216219_91216368_91218620_91218779_91221765
61861	chr2	+	1349	8	NNC	ENSMUSG00000025817.13	novel	743	8	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	255.284075460404	1	56	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACATGGCAAGCAAAAGA	1936	False	NA	NA	False	NA	NA	NA	5850063	5873533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869304_5872888
61862	chrX	-	2870	10	NNC	ENSMUSG00000035847.16	novel	4972	9	NA	NA	1	-1983	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	11.2062592738871	32	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTCATGTATTAAATTGT	NA	False	NA	NA	False	NA	NA	NA	69408689	69388657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_69390280_69394532_69394707_69396749_69396877_69401872_69402044_69403554_69403756_69404648_69404738_69406582_69406761_69407407_69407545_69408400_69408497_69408614
61863	chr7	+	975	7	NIC	ENSMUSG00000030588.13	novel	1111	8	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	620.032638029824	78	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6041	False	NA	NA	False	NA	NA	NA	28937757	28946954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
61864	chr16	-	1001	6	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	-15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5071.27903393217	1	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCTGACAAGGCTATG	7204	False	NA	NA	False	NA	NA	NA	18066525	18057649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063230_18065170_18065290_18066411
61865	chr15	+	2480	3	FSM	ENSMUSG00000049521.3	ENSMUST00000059619.3	2560	3	80	0	80	0	multi-exon	FALSE	canonical	3	20	junction_1	1.5	21	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGACCTTGGGGAAAAGC	NA	False	NA	NA	False	NA	NA	NA	78726903	78735097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78726926_78731294_78732020_78733364
61866	chr1	+	1627	8	FSM	ENSMUSG00000026333.15	ENSMUST00000027571.13	2494	8	4	863	0	-123	multi-exon	FALSE	canonical	3	8	junction_3	17.1939714162035	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTTCTATATGGGTAC	NA	False	NA	NA	False	NA	NA	NA	97697925	97720571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710918_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
61869	chr7	+	979	4	FSM	ENSMUSG00000063439.8	ENSMUST00000205658.2	995	4	15	1	15	-1	multi-exon	FALSE	canonical	3	77	junction_2	1.69967317119759	381	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAAGGTGCCTCCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	25380219	25385982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_25380404_25380807_25380900_25382715_25382842_25385405
61870	chr17	-	795	3	FSM	ENSMUSG00000040327.17	ENSMUST00000183016.8	791	3	-55	51	39	-51	multi-exon	FALSE	canonical	1	3	junction_2	0.5	3	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGTTTCCAGTCATGGAG	750	False	NA	NA	False	NA	NA	NA	46831552	46830436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46830858_46830937_46831167_46831407
61871	chr16	-	1250	6	Antisense	novelGene_ENSMUSG00000002845.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTCCTATCCACAGC	NA	False	NA	NA	False	NA	NA	NA	38411742	38402209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_38402481_38405739_38405879_38405978_38406046_38406587_38406771_38408544_38408664_38411271
61872	chr14	-	2499	1	FSM	ENSMUSG00000115124.2	ENSMUST00000227403.2	1110	1	-1429	40	-1429	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	118	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTAAAACTAGAATGT	NA	False	NA	NA	False	NA	NA	NA	33955114	33952615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_33952600_33955100
61874	chr10	-	440	1	ISM	ENSMUSG00000020027.19	ENSMUST00000139210.8	4242	5	25294	2014	5152	291	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGTGAAAAGGGCTGGG	9030	False	NA	NA	False	NA	NA	NA	95223677	95223237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_95223200_95223700
61875	chr7	-	1523	8	ISM	ENSMUSG00000053175.18	ENSMUST00000120537.8	1850	9	2563	0	1950	0	3prime_fragment	FALSE	canonical	3	615	junction_1	45.525503056764	198	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGCTTTCCATCTGTT	8292	False	NA	NA	False	NA	NA	NA	19554132	19542386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19542982_19543066_19543185_19543420_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971
61876	chr7	+	1380	6	NNC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	702.694414379394	2	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115692573	115704445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446_115703933_115703993
61878	chrX	-	1891	2	NNC	ENSMUSG00000067649.4	novel	2163	5	NA	NA	-208	3	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	21	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGTTTACTAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	91164585	91162481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_91164295_91164507
61879	chr12	+	881	2	Antisense	novelGene_ENSMUSG00000020993.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATCTACACAGTGGGT	8922	False	NA	NA	False	NA	NA	NA	59089912	59091369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_59090462_59091037
61880	chr2	+	293	1	Antisense	novelGene_ENSMUSG00000080859.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGCATCCCTGTCTGGAGC	NA	False	NA	NA	False	NA	NA	NA	105384548	105384841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_105384500_105384800
61881	chr1	-	1467	10	Antisense	novelGene_ENSMUSG00000006304.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCGCCGCCGCCTTACT	NA	False	NA	NA	False	NA	NA	NA	74307322	74275729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_74276057_74285236_74285272_74287288_74287402_74290410_74290456_74293983_74294173_74295121_74295193_74301647_74301740_74302896_74302981_74303494_74303613_74306929
61882	chr8	+	1121	7	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	20	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0864912962436	9	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAACAAGAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	85635295	85638043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637574_85638005
61884	chr11	-	912	7	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	42	-547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	570.8764460605	1	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAAGTAAGCCACACGGG	NA	False	NA	NA	False	NA	NA	NA	17161526	17153744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_17154002_17154500_17154572_17158788_17158854_17159066_17159138_17159310_17159395_17160987_17161138_17161312
61886	chrX	+	2455	3	Antisense	novelGene_ENSMUSG00000031389.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGACTTCGAGTCCCAATG	NA	False	NA	NA	False	NA	NA	NA	72947998	72954849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72948076_72948185_72950483_72954768
61887	chr9	-	2369	2	NIC	ENSMUSG00000032565.10	novel	1631	3	NA	NA	-16	-16	intron_retention	FALSE	canonical	3	29	junction_1	0	8	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CACCAATTAAAAAAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	105008995	105006546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_105008762_105008841
61889	chr16	-	1022	5	NNC	ENSMUSG00000022683.14	novel	1423	4	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	21.6852484422014	86	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTGTGTAAGAGGTAAAT	NA	False	NA	NA	False	NA	NA	NA	13548552	13532920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13533461_13542972_13543080_13545826_13545978_13548220_13548288_13548395
61890	chr14	+	2048	8	NNC	ENSMUSG00000094925.8	novel	1751	5	NA	NA	-131571	-333	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	2.89968330431206	1	94	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACTCTTAAGAAACTTCT	NA	False	NA	NA	False	NA	NA	NA	40938994	41078463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40939274_41068013_41068130_41069146_41069406_41070589_41070722_41071440_41071604_41072562_41072695_41073396_41073579_41077678
61891	chr19	-	1482	4	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1411	4	NA	NA	13	0	multi-exon	FALSE	canonical	3	15	junction_1	22.7303028283098	58	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	7778	False	NA	NA	False	NA	NA	NA	4861649	4835180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4835596_4842425_4842849_4843843_4844038_4861199
61892	chr4	+	722	1	ISM	ENSMUSG00000005045.17	ENSMUST00000030775.12	9486	42	50794	28	17303	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	5	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTTGGGAAGGGATGGA	NA	False	NA	NA	False	NA	NA	NA	152473901	152474623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152473900_152474600
61893	chr2	+	3341	9	ISM	ENSMUSG00000027253.16	ENSMUST00000028689.4	7926	38	39810	-118	21002	118	3prime_fragment	FALSE	canonical	1	3	junction_1	1.69096865730859	10	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTTTGGCTGGCTTGGA	NA	False	NA	NA	False	NA	NA	NA	91327665	91344242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_91327736_91328684_91328794_91331333_91331479_91331725_91331840_91332255_91332392_91335937_91336006_91336345_91336434_91338813_91338956_91341773
61894	chr7	-	632	1	Intergenic	novelGene_2961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTATAAAGTTTAGAGTGT	9682	False	NA	NA	False	NA	NA	NA	44803648	44803016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_44803000_44803600
61895	chr17	+	925	5	Antisense	novelGene_ENSMUSG00000117098.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGCCGCACTTCCGGC	NA	False	NA	NA	False	NA	NA	NA	71280953	71297538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_71281172_71281217_71281491_71282452_71282618_71284043_71284242_71297467
61896	chr9	+	1422	10	NNC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	37.1167660362221	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTGTAGCCTGGACTGGA	NA	False	NA	NA	False	NA	NA	NA	107926496	107928893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107926594_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
61897	chr1	-	2126	3	ISM	ENSMUSG00000070939.10	ENSMUST00000095014.8	5607	13	-24	27202	-9	80	5prime_fragment	FALSE	canonical	3	11	junction_1	0.5	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGTCCCGTATAATCCA	7759	False	NA	NA	False	NA	NA	NA	43137806	43113561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_43115113_43136011_43136210_43137429
61898	chr4	+	2022	2	FSM	ENSMUSG00000086788.3	ENSMUST00000134416.2	1002	2	108	-1128	64	-585	multi-exon	FALSE	canonical	2	7	junction_1	0	21	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTGGATCTTGGAGTT	NA	False	NA	NA	False	NA	NA	NA	135354192	135356924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135354357_135355066
61899	chr4	+	1617	3	Antisense	novelGene_ENSMUSG00000066042.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTTCCGGTAGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	132186082	132191215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_132187424_132190174_132190318_132191082
61903	chrX	+	1239	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	96	4	96	-4	multi-exon	FALSE	canonical	3	755	junction_2	75.5	2235	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTAGTTTGGCCTCCTGTGT	1266	False	NA	NA	False	NA	NA	NA	7594773	7597299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7595002_7595954_7596173_7596506
61904	chr3	-	1446	1	Genic_Genomic	ENSMUSG00000001420.14	novel	NA	NA	NA	NA	-36	-1601	mono-exon	FALSE	NA	NA	NA	NA	NA	26	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCAGTGTCATCTTTTAG	NA	False	NA	NA	False	NA	NA	NA	88243491	88242045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_88242000_88243500
61907	chr11	-	1693	10	FSM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	34	0	4	0	multi-exon	FALSE	canonical	2	54	junction_9	11.3376897945103	69	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	NA	False	NA	NA	NA	120515806	120509197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
61908	chr18	-	936	8	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	-3	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	461.986836105417	19	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTGCATATGAAAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	77855489	77845285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77845444_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
61910	chr2	-	3067	20	NIC	ENSMUSG00000046971.8	novel	3116	20	NA	NA	33	-13	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	4.59133231317145	42	46	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGGTCGCCAGCCTGTG	9992	False	NA	NA	False	NA	NA	NA	120144613	120130459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547_120133656_120133733_120133872_120134056_120134172_120135033_120135257_120135482_120135620_120137705_120137842_120138043_120138082_120138454_120138569_120138685_120138850_120141497_120141565_120141959_120142003_120142244_120142286_120142585_120142712_120142787_120142925_120143527_120143601_120144426
61911	chr5	+	227	2	Intergenic	novelGene_962	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCGGCGGCGCGCGTCCG	NA	False	NA	NA	False	NA	NA	NA	146197814	146198113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197877_146197948
61912	chr1	-	1463	7	FSM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	-1	0	-1	0	multi-exon	FALSE	canonical	3	21	junction_6	22.7943706500823	200	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	NA	NA	NA	170803697	170788126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469
61913	chr4	-	159	1	Intergenic	novelGene_1972	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCATCTCTCCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	132359208	132359049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_132359000_132359200
61914	chr4	-	593	1	Intergenic	novelGene_1971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGCTCATGTATTGGGT	NA	False	NA	NA	False	NA	NA	NA	132358716	132358123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_132358100_132358700
61916	chr12	-	1419	3	ISM	ENSMUSG00000002020.16	ENSMUST00000110254.9	6602	35	91174	32	6522	-32	3prime_fragment	FALSE	canonical	2	5	junction_1	3	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAGCATGGGGGAATAAA	NA	False	NA	NA	False	NA	NA	NA	84832095	84830018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_84831170_84831527_84831678_84831977
61917	chrX	-	1312	8	NIC	ENSMUSG00000001128.8	novel	1636	9	NA	NA	68	-82	combination_of_known_splicesites	FALSE	canonical	1	6	junction_3	38.4819066946681	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACTCTTTCTAAGATTCT	NA	False	NA	NA	False	NA	NA	NA	20797726	20791774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_20791999_20793519_20793632_20793773_20793963_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
61918	chr11	+	1279	10	NNC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	-35	-5007	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	322.6670110191	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTACAACGTCCACACCC	NA	False	NA	NA	False	NA	NA	NA	102919375	102954731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943146_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633
61919	chr3	+	2516	10	NIC	ENSMUSG00000027936.19	novel	2747	14	NA	NA	10	738	intron_retention	FALSE	canonical	3	75	junction_4	13.8403596613511	4	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTCGCCAACAATGTCA	NA	False	NA	NA	False	NA	NA	NA	90161612	90168366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90161866_90164423_90164526_90164601_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003
61921	chr12	+	2680	25	Antisense	novelGene_ENSMUSG00000020982.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	18	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAGCCGACGCAGGACC	2586	False	NA	NA	False	NA	NA	NA	69366935	69403919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_69367191_69367295_69367343_69368872_69369127_69371007_69371124_69371203_69371264_69371691_69371749_69374405_69374519_69377859_69377924_69378644_69378748_69384590_69384681_69386491_69386557_69387664_69387851_69388046_69388255_69388345_69388424_69390901_69390965_69391452_69391532_69391684_69391753_69393088_69393164_69395624_69395714_69399080_69399151_69400569_69400716_69401419_69401547_69402803_69402907_69403052_69403122_69403824
61922	chr15	+	1254	1	FSM	ENSMUSG00000115771.2	ENSMUST00000228698.2	462	1	73	-865	73	865	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGGAAAAAAGTCCTTGT	309	False	NA	NA	False	NA	NA	NA	38079418	38080672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_38079400_38080700
61924	chr14	+	1502	2	Intergenic	novelGene_549	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	14	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAACTAAACAAAACCT	NA	False	NA	NA	False	NA	NA	NA	41314058	41329771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_41314409_41328619
61925	chr9	-	2684	11	NNC	ENSMUSG00000025644.11	novel	2010	2	NA	NA	-7501	-998	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGGCCCTGCCCACCTTT	2838	False	NA	NA	False	NA	NA	NA	108934365	108923909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108923941_108928336_108928385_108929132_108930252_108931087_108931271_108931640_108931769_108931892_108931994_108932280_108932414_108932678_108932837_108933094_108933205_108933290_108933397_108933798
61926	chr7	+	2154	4	ISM	ENSMUSG00000042289.12	ENSMUST00000132702.8	1899	6	467	25	130	-25	intron_retention	FALSE	canonical	3	82	junction_1	6.0184900284226	1	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAGAATAAAATCCTTTTC	2351	False	NA	NA	False	NA	NA	NA	127400242	127402949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127400419_127400632_127400789_127401005_127401286_127401407
61927	chr1	+	1727	5	NIC	ENSMUSG00000026578.7	novel	1909	6	NA	NA	36	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	20.6443091431997	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAATGTGTGGTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	164103189	164115411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_164103331_164107435_164108384_164109959_164110107_164113809_164113965_164115075
61928	chr10	-	733	7	NIC	ENSMUSG00000062981.6	novel	677	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_3	1770.46641688944	4	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	NA	False	NA	NA	NA	95337824	95316666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_95316840_95326107_95326275_95326396_95326444_95329492_95329578_95332685_95332750_95336244_95336385_95337767
61929	chr8	+	1493	1	Intergenic	novelGene_1764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCCAATTCGACTTGTCA	NA	False	NA	NA	False	NA	NA	NA	117689088	117690581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_117689100_117690600
61930	chr5	+	1924	15	NNC	ENSMUSG00000029146.15	novel	2018	15	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	141.764895916746	1	118	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTTTGGTTCCCTCTCA	NA	False	NA	NA	False	NA	NA	NA	31350645	31356241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353209_31353309_31353386_31353520_31353609_31353824_31353886_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
61932	chr4	-	1320	1	Genic_Genomic	ENSMUSG00000086127.2	novel	NA	NA	NA	NA	5252	3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTGTCTTGGTCACG	NA	False	NA	NA	False	NA	NA	NA	33304885	33303565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_33303600_33304900
61933	chr17	+	202	1	Intergenic	novelGene_252	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCAGTGCTAGAACCA	NA	False	NA	NA	False	NA	NA	NA	46810813	46811015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_46810800_46811000
61936	chr2	-	2206	1	Intergenic	novelGene_2617	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGAATAAGCCCAGGACC	NA	False	NA	NA	False	NA	NA	NA	37397635	37395429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_37395400_37397600
61938	chr7	-	999	1	ISM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	3394	4	2000	0	mono-exon	FALSE	NA	NA	NA	NA	NA	581	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	3650	False	NA	NA	False	NA	NA	NA	126622304	126621305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126621300_126622300
61939	chr9	+	1547	7	NNC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	56.3572434465073	2	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	NA	False	NA	NA	NA	107926487	107928901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107926561_107926710_107926845_107927069_107927174_107927313_107927457_107927649_107927972_107928047_107928442_107928524
61940	chr9	-	1191	5	FSM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	28	4	7	-4	multi-exon	TRUE	canonical	3	119	junction_3	3.96074487943871	851	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTACTTGGCTCCTTG	8952	False	NA	NA	False	NA	NA	NA	110453492	110450206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110453382
61941	chr18	-	883	8	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	30	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	599.879239548108	1	59	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTAAACTTTGTGGCCTG	NA	False	NA	NA	False	NA	NA	NA	77855450	77845311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77845454_77847136_77847209_77848167_77848234_77848606_77848733_77849681_77849817_77851772_77851909_77854563_77854739_77855419
61943	chr6	+	1632	5	ISM	ENSMUSG00000030276.20	ENSMUST00000203925.2	2517	9	1963	4666	1963	-3	internal_fragment	FALSE	canonical	3	13	junction_1	4.14578098794425	4	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTGTTTTTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	113376681	113386857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_113376733_113378262_113378459_113382259_113382409_113384136_113384381_113385865
61944	chr2	+	2221	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	50	1059	50	-1059	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	26	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTCCATGATTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	62494678	62523394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
61945	chr10	+	769	2	Antisense	novelGene_ENSMUSG00000020227.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	31	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATATACATAAAATAAATAAA	3683	False	NA	NA	False	NA	NA	NA	119996650	120000630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_119996686_119999896
61946	chr10	+	613	1	Intergenic	novelGene_3539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCCCGCCCACTCCCAAT	8629	False	NA	NA	False	NA	NA	NA	120001596	120002209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120001600_120002200
61949	chr14	-	2060	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	9	580	9	-580	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	3	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAGCATGAGAAACACAAA	NA	False	NA	NA	False	NA	NA	NA	69969974	69955028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
61950	chr2	+	1492	4	Intergenic	novelGene_2821	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_3	18.7794213613377	1	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATTTATATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	172419597	172468690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172419745_172420215_172420303_172467241_172468156_172468346
61951	chr3	-	1496	6	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	504	2	NA	NA	-4	-1	multi-exon	FALSE	canonical	0	0	junction_4	65.5957315684489	17	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCAAGCTCTCCTTCGTG	NA	False	NA	NA	False	NA	NA	NA	41447631	41432012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41437302_41437515_41440324_41440396_41447522
61953	chr17	-	3051	11	Antisense	novelGene_ENSMUSG00000024253.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	48	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGCCATGGCAACGACGT	NA	False	NA	NA	False	NA	NA	NA	84959179	84933895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_84934002_84935709_84935837_84940908_84941016_84943658_84943740_84950291_84950485_84951530_84951600_84952144_84952224_84954671_84954748_84955071_84955142_84956640_84956746_84957141
61954	chr9	+	1188	7	NNC	ENSMUSG00000032478.15	novel	719	7	NA	NA	1	7	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	215.187321497651	59	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCAGTACTCCTGTGC	NA	False	NA	NA	False	NA	NA	NA	109661839	109672031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109661957_109662263_109662364_109664327_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
61957	chr2	-	1358	5	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	468.526146548941	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	152185980	152179341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179679_152180347_152180608_152181634_152181928_152184956_152185255_152185810
61958	chr17	-	1262	5	FSM	ENSMUSG00000057411.10	ENSMUST00000072735.9	1321	5	54	5	54	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7185796180472	515	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8021	False	NA	NA	False	NA	NA	NA	26011718	26009479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011026
61960	chr11	+	1700	3	FSM	ENSMUSG00000085148.2	ENSMUST00000149940.2	1752	3	65	-13	-40	13	multi-exon	FALSE	canonical	3	9	junction_2	6.5	56	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTCTTTTATGAGTGTTT	3903	False	NA	NA	False	NA	NA	NA	75352429	75357515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75352582_75354518_75354684_75356132
61961	chr17	+	2238	8	NIC	ENSMUSG00000048731.16	novel	1138	7	NA	NA	-1	-14	intron_retention	FALSE	canonical	2	5	junction_2	8.56666534317997	37	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGGCATTCACCTCCT	NA	False	NA	NA	False	NA	NA	NA	27236965	27255337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_27237145_27244310_27244434_27247806_27248921_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
61962	chr6	+	2923	4	FSM	ENSMUSG00000030337.17	ENSMUST00000100942.9	3011	4	73	15	73	-15	multi-exon	FALSE	canonical	2	3	junction_1	0.471404520791032	12	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAATTCCTACCACAAC	423	False	NA	NA	False	NA	NA	NA	125192616	125199111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125192691_125195536_125195664_125195873_125196033_125196548
61963	chr13	-	2160	2	FSM	ENSMUSG00000021469.10	ENSMUST00000021922.10	2453	2	279	14	279	-14	multi-exon	FALSE	canonical	3	8	junction_1	0	22	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTTTATTGCAGTAAA	NA	False	NA	NA	False	NA	NA	NA	53626831	53620933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_53622630_53626367
61965	chr13	+	795	7	ISM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	2785	2027	-747	-2027	3prime_fragment	FALSE	canonical	3	4380	junction_4	245.440873169532	2	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCATATACTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	14790609	14800194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
61966	chr5	-	1610	7	NIC	ENSMUSG00000029128.13	novel	1697	8	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	38	junction_5	224.672663124724	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	NA	False	NA	NA	NA	41865466	41782318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41860780_41860878_41865247
61968	chr7	-	2847	3	FSM	ENSMUSG00000037029.9	ENSMUST00000136508.3	585	3	-27	-2235	9	780	multi-exon	FALSE	canonical	1	5	junction_1	4.5	95	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTTAAATCCTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	29869143	29859913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29862654_29862751_29862799_29869083
61971	chr7	+	2010	11	NIC	ENSMUSG00000053111.14	novel	515	5	NA	NA	-54	-11	combination_of_known_junctions	FALSE	canonical	1	4	junction_8	2.00249843945008	37	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGAAAAACCCTCACAGGA	NA	False	NA	NA	False	NA	NA	NA	133391159	133483250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_133391287_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
61972	chr10	-	2036	10	ISM	ENSMUSG00000001151.11	ENSMUST00000220395.2	6762	30	41757	5	-6322	-1	3prime_fragment	FALSE	canonical	3	133	junction_9	36.0219411874705	107	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTCTCCTGGCTACAGC	NA	False	NA	NA	False	NA	NA	NA	76210989	76187101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_76187614_76188742_76188871_76190006_76190146_76190892_76190970_76191997_76192231_76192868_76192989_76203141_76203316_76204564_76204668_76205668_76205914_76210684
61973	chr7	-	1342	5	NNC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	7	152	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	47.2890050646025	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCTTTGTAGCCAAGGC	NA	False	NA	NA	False	NA	NA	NA	25418463	25412207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_25412539_25413740_25413908_25414175_25414446_25415159_25415613_25418342
61974	chr5	+	2377	9	NNC	ENSMUSG00000033623.14	novel	7708	11	NA	NA	-20	-2626	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	43.914690025093	57	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAATCTCCCAGTCTGGC	1509	False	NA	NA	False	NA	NA	NA	108621732	108652216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222_108649282_108651507
61976	chr2	-	2240	10	NNC	ENSMUSG00000027244.15	novel	3551	16	NA	NA	-105	-4087	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_9	83.3103672057123	2	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTCAAGTTCTCCCAAC	NA	False	NA	NA	False	NA	NA	NA	91536184	91513818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91535938
61978	chr18	+	2247	1	Antisense	novelGene_ENSMUSG00000024274.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	623	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATGAGTCAATGAAGAG	NA	False	NA	NA	False	NA	NA	NA	24099616	24101863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_24099600_24101900
61979	chr19	-	890	5	FSM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	3	-8	0	-5	multi-exon	FALSE	canonical	3	1199	junction_4	51.0165414351071	2173	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATGTGGGTTTTTTGGT	966	False	NA	NA	False	NA	NA	NA	44134882	44127689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134797
61980	chr18	+	2522	8	Antisense	novelGene_ENSMUSG00000003778.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGCGGGGAACTCTGGGA	NA	False	NA	NA	False	NA	NA	NA	34743605	34757639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34743677_34744174_34746154_34746267_34746349_34747499_34747626_34747801_34747851_34749717_34749787_34756506_34756605_34757590
61981	chr15	+	1252	1	Antisense	novelGene_ENSMUSG00000022246.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTAGTAACTGACTGGG	NA	False	NA	NA	False	NA	NA	NA	10572474	10573726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_10572500_10573700
61982	chr4	+	1288	7	FSM	ENSMUSG00000028743.8	ENSMUST00000073787.7	1288	7	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	35.9787746070127	218	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGTCTCCTCTGCTGCCC	NA	False	NA	NA	False	NA	NA	NA	139038054	139045737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_139038388_139041414_139041603_139041777_139041883_139044020_139044118_139044244_139044345_139044880_139045011_139045402
61983	chr17	+	1569	8	FSM	ENSMUSG00000073471.4	ENSMUST00000097423.3	2189	8	296	324	-46	-4	multi-exon	TRUE	canonical	3	57	junction_4	7.41482244134913	205	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACACTTTTTCATTTATT	NA	False	NA	NA	False	NA	NA	NA	8164780	8198332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_8165136_8171380_8171469_8188978_8189121_8191655_8191802_8192768_8192973_8194876_8195040_8197549_8197637_8197948
61984	chr17	-	1659	4	ISM	ENSMUSG00000045409.17	ENSMUST00000113704.10	1465	5	2076	0	-87	0	3prime_fragment	FALSE	canonical	3	20	junction_1	18.1536650722535	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCATTGTGTTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	36580199	36573496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_36574130_36574620_36574852_36578016_36578113_36579500
61986	chr4	-	1477	1	NIC	ENSMUSG00000028447.12	novel	885	6	NA	NA	6708	-155	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGGAGCCTGTTGGCC	6725	False	NA	NA	False	NA	NA	NA	41716429	41714952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41715000_41716400
61987	chr14	+	1218	11	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-29	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	703.754680268629	1	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTATGAAAACCGTGCCAT	NA	False	NA	NA	False	NA	NA	NA	21881604	21895571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213_21895352_21895443
61989	chr15	+	2254	2	NNC	ENSMUSG00000022248.15	novel	4206	3	NA	NA	4727	-4	intron_retention	FALSE	canonical	0	0	junction_1	0	5	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAATTATCCGACTTAC	5322	False	NA	NA	False	NA	NA	NA	10491421	10493756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_10493477_10493557
61990	chr8	-	1436	4	NNC	ENSMUSG00000031796.8	novel	2544	4	NA	NA	149	-804	intron_retention	FALSE	canonical	0	0	junction_2	247.02811355975	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACTCTACTCAGAAGATG	NA	False	NA	NA	False	NA	NA	NA	96161236	96147833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96148875_96149410_96149605_96151244_96151325_96161115
61991	chr15	+	1407	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	316	2	-23	-2	multi-exon	FALSE	canonical	3	1292	junction_2	43	1	92	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTATGTGGGTTTTCAGT	4461	False	NA	NA	False	NA	NA	NA	80139700	80141740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
61992	chr15	+	1277	2	ISM	ENSMUSG00000022286.17	ENSMUST00000159221.2	717	7	12004	1408	12004	-1408	internal_fragment	FALSE	canonical	3	68	junction_1	0	25	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTGTTTTTGT	219	False	NA	NA	False	NA	NA	NA	37347984	37359776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_37348099_37358613
61994	chr2	+	530	4	NNC	ENSMUSG00000017723.12	novel	558	4	NA	NA	39	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	250.185264687325	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACACCTGCTTGCCTCACT	287	False	NA	NA	False	NA	NA	NA	164404672	164410427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164404725_164405227_164405386_164407711_164407859_164410254
61995	chr6	-	1354	10	NNC	ENSMUSG00000030032.15	novel	1216	11	NA	NA	12	0	intron_retention	FALSE	canonical	0	0	junction_7	12.5471948564383	11	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9912	False	NA	NA	False	NA	NA	NA	83133349	83129690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132218_83132459_83132523_83132630_83132854_83133156
61996	chr9	+	1094	5	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	2	-36	intron_retention	FALSE	canonical	3	38	junction_3	356.599477705731	257	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTTTGTTTACCTTGTC	NA	False	NA	NA	False	NA	NA	NA	69919862	69930112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_69919944_69922573_69922693_69924100_69924474_69926670_69926798_69929718
61997	chr13	-	1510	1	Intergenic	novelGene_1335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAAAATCAAATAGGCA	NA	False	NA	NA	False	NA	NA	NA	31860672	31859162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_31859200_31860700
61998	chr7	+	1116	5	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	-10	-4402	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	14.7880864211703	178	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGTGTTTGTCCCA	NA	False	NA	NA	False	NA	NA	NA	106842218	106895201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106891710_106891844_106894609
61999	chr1	-	1198	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	28	16	0	0	multi-exon	FALSE	canonical	2	9	junction_2	11.4309521329882	222	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTATTTTTAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	190795101	190778038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
62000	chr7	+	910	4	NNC	ENSMUSG00000033429.11	novel	828	3	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	84.9156444164835	86	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATTCATGTATTTGTTA	NA	False	NA	NA	False	NA	NA	NA	64042522	64061864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_64042592_64048440_64048662_64049916_64050255_64061582
62001	chr19	-	1432	2	FSM	ENSMUSG00000040414.9	ENSMUST00000236286.2	1046	2	-390	4	-390	0	multi-exon	FALSE	canonical	3	293	junction_1	0	103	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACGCTGTGTTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	43654803	43652243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_43653083_43654210
62002	chr13	+	943	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	142.474515806586	20	2	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	104365469	104386125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378908_104378962_104379253_104379381_104381785_104381840_104385868
62003	chr6	+	886	2	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256153	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_148256511_148256567
62004	chr15	-	1689	1	ISM	ENSMUSG00000022263.11	ENSMUST00000227999.2	3132	8	9980	4	4179	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATACTGGTGTTAGGCTT	NA	False	NA	NA	False	NA	NA	NA	27732429	27730740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_27730700_27732400
62005	chr11	+	1368	10	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	-1	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	148.852234294017	7	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGGGTGCGGGGAA	NA	False	NA	NA	False	NA	NA	NA	60345448	60359539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60345570_60347376_60347433_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
62006	chr13	+	2975	1	Antisense	novelGene_ENSMUSG00000021327.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACCCCGCAGTCACAAAA	NA	False	NA	NA	False	NA	NA	NA	21583886	21586861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_21583900_21586900
62007	chr1	-	2096	9	ISM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	13	7663	0	-29	5prime_fragment	FALSE	canonical	3	38	junction_2	13.7244080018047	51	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGTATTCTAAGCTA	NA	False	NA	NA	False	NA	NA	NA	130390468	130374426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
62008	chr2	-	718	3	ISM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	28	0	-4	0	intron_retention	FALSE	canonical	3	329	junction_1	943.5	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	386	False	NA	NA	False	NA	NA	NA	84501024	84499564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_84499742_84500355_84500461_84500588
62009	chr1	+	2180	12	NNC	ENSMUSG00000026353.10	novel	4113	13	NA	NA	131	570	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	150.047485596675	1	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGAATGATCTTATTTT	225	False	NA	NA	False	NA	NA	NA	128172029	128205327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128172290_128179939_128180043_128183844_128183975_128186568_128186741_128187180_128187279_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
62010	chr7	-	1796	7	FSM	ENSMUSG00000030701.18	ENSMUST00000107044.10	1806	7	10	0	10	0	multi-exon	FALSE	canonical	3	13	junction_3	4.3365372770859	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	100307653	100293106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
62011	chr2	-	742	5	NNC	ENSMUSG00000018770.10	novel	723	5	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2107.30970374551	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTGCTGTGATTTGTA	NA	False	NA	NA	False	NA	NA	NA	73741644	73738792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739052_73739527_73739787_73740207_73740286_73741298_73741401_73741600
62012	chr7	+	1164	5	NNC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	76	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	503.710482320946	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTATTTTGAGTCCTT	3009	False	NA	NA	False	NA	NA	NA	3697597	3704009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3697655_3697739_3697844_3697976_3698227_3698350_3698621_3703526
62013	chr7	-	719	1	Intergenic	novelGene_3031	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGACTTGGGGCCAGTGA	NA	False	NA	NA	False	NA	NA	NA	125042989	125042270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_125042300_125043000
62014	chr11	+	1926	4	FSM	ENSMUSG00000040471.18	ENSMUST00000076443.10	1818	4	39	-147	31	147	multi-exon	FALSE	canonical	2	5	junction_1	0.942809041582063	33	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCAAATCTTCCGGGGAC	NA	False	NA	NA	False	NA	NA	NA	72326390	72329373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72326591_72327264_72327468_72327544_72327659_72327964
62015	chr2	-	2268	10	NNC	ENSMUSG00000027199.15	novel	2389	9	NA	NA	36	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4.31477507532169	25	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTTTATGAGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	122441748	122424957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_122425383_122425457_122426091_122427852_122427970_122428617_122428682_122430859_122431025_122431172_122431311_122432985_122433177_122434062_122434259_122440149_122440369_122441628
62016	chr7	-	2188	7	NIC	ENSMUSG00000030881.16	novel	3275	8	NA	NA	-1	-3	intron_retention	FALSE	canonical	3	112	junction_2	9.86013297183269	6	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGGCCCAGTGAGGTC	NA	False	NA	NA	False	NA	NA	NA	105289543	105284833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
62017	chr17	+	1657	2	Antisense	novelGene_ENSMUSG00000073406.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTCCTTATTCAAATATAA	NA	False	NA	NA	False	NA	NA	NA	36394436	36399349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36394874_36398129
62018	chr18	+	1925	5	FSM	ENSMUSG00000034006.18	ENSMUST00000070135.8	1911	5	-15	1	-3	-1	multi-exon	FALSE	canonical	3	25	junction_3	7.26291952316697	75	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAACATGCTTCATGTGGT	NA	False	NA	NA	False	NA	NA	NA	80299517	80335926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80326490_80326708_80334790
62020	chr6	+	948	6	NNC	ENSMUSG00000068328.11	novel	1265	11	NA	NA	-330	0	intron_retention	FALSE	canonical	1	64	junction_1	403.151882049433	15	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	248	False	NA	NA	False	NA	NA	NA	83033060	83034663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83033117_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034376_83034478
62021	chrX	-	1219	3	FSM	ENSMUSG00000041353.13	ENSMUST00000141948.8	1250	3	30	1	30	-1	multi-exon	FALSE	canonical	3	12	junction_2	125	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCTGACTTGAGAGGTAT	NA	False	NA	NA	False	NA	NA	NA	149224072	149191574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149192597_149203337_149203438_149223975
62022	chr1	+	1547	5	ISM	ENSMUSG00000026523.15	ENSMUST00000194087.6	3225	27	65184	38792	-3067	32688	internal_fragment	FALSE	canonical	2	15	junction_2	2.91547594742265	11	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAATTAACTTCTAGGTA	NA	False	NA	NA	False	NA	NA	NA	175591536	175604140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_175591635_175594571_175594721_175597071_175597196_175599738_175599915_175603140
62023	chr7	+	719	2	Genic_Genomic	ENSMUSG00000107470.3	novel	795	1	NA	NA	-23	84	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAGATTAAAATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	3230818	3231720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_3231054_3231236
62028	chr7	-	1777	8	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	23040	0	-2514	0	3prime_fragment	FALSE	canonical	3	8	junction_7	19.3422451897289	114	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	4472	False	NA	NA	False	NA	NA	NA	44993098	44988549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
62029	chr2	-	1298	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	139	4	139	-4	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	1	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGCTTGTGTACTTTATT	5468	False	NA	NA	False	NA	NA	NA	174280693	174269289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
62030	chr19	-	622	4	NNC	ENSMUSG00000118340.2	novel	1701	4	NA	NA	-15164	-2190	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2.35702260395516	1	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATATGGCCTGCAGAGTA	NA	False	NA	NA	False	NA	NA	NA	23934122	23909378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23909422_23913755_23914030_23914668_23914894_23934042
62032	chr15	-	1504	9	NNC	ENSMUSG00000002524.18	novel	1821	11	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	620.58328157871	1	81	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGAAGTCCCTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	75952758	75942037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944118_75947579_75947682_75949449_75949552_75952710
62033	chr2	+	1387	9	NNC	ENSMUSG00000039787.14	novel	2715	12	NA	NA	-2	-812	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7.5291101731878	6	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCATCCCCAACCCACC	NA	False	NA	NA	False	NA	NA	NA	29759503	29772040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29759738_29761034_29761146_29761286_29761405_29762574_29762710_29762819_29762915_29768119_29768149_29770624_29770753_29770926_29771131_29771707
62034	chr12	-	2182	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	-13	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	31.9409176797133	1	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATCAACACCTGCAGAT	NA	False	NA	NA	False	NA	NA	NA	4283978	4263488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267316_4281536_4281683_4283530_4283658_4283751
62035	chr15	+	896	5	NNC	ENSMUSG00000022587.15	novel	2068	5	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	239.702419679068	327	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8354	False	NA	NA	False	NA	NA	NA	74827468	74831180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_74827567_74829625_74829727_74830117_74830238_74830341_74830498_74830759
62036	chr8	+	2064	11	NIC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	-16	-6263	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	17.9899972206779	1	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAGGCAAGCTCCCATC	NA	False	NA	NA	False	NA	NA	NA	13338173	13364643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360144_13360341_13363805_13363957_13364557
62038	chr7	+	3564	20	ISM	ENSMUSG00000030513.15	ENSMUST00000055576.12	4405	22	65182	304	-25801	-252	3prime_fragment	FALSE	canonical	3	127	junction_2	21.7603415730076	1	226	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATATTTTCATTGAAAT	NA	False	NA	NA	False	NA	NA	NA	65576958	65699830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65675313_65675353_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
62039	chr9	-	2395	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	0	-1358	0	-13	multi-exon	FALSE	canonical	3	83	junction_2	53	320	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGTAACACACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	14695822	14690926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_14692908_14693910_14694259_14695756
62040	chr10	-	1768	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	21	4	21	-3	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	1	75	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAAGCGCCTGTCTGTTTTT	5104	False	NA	NA	False	NA	NA	NA	75768288	75759059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
62041	chr5	-	1129	2	FSM	ENSMUSG00000029616.10	ENSMUST00000052590.8	1123	2	-3	-3	-3	3	multi-exon	FALSE	canonical	3	31	junction_1	0	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTTTTTAGATA	3219	False	NA	NA	False	NA	NA	NA	121590562	121582815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121583636_121590253
62043	chr11	-	1447	1	ISM	ENSMUSG00000025582.5	ENSMUST00000026670.5	5217	5	7587	1	7587	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTCATTGGATTCT	NA	False	NA	NA	False	NA	NA	NA	119430992	119429545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_119429500_119431000
62044	chr11	+	1260	9	Antisense	novelGene_ENSMUSG00002076145.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTCTACAGCGGAACAGAC	NA	False	NA	NA	False	NA	NA	NA	21507250	21521792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_21507571_21508463_21508551_21509190_21509310_21509700_21509876_21512864_21512984_21514036_21514217_21515823_21515921_21516619_21516721_21521730
62045	chr14	+	1500	10	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19449	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	340.025525548732	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTAAGCTTATGGTTT	NA	False	NA	NA	False	NA	NA	NA	122514901	122639637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122514996_122517493_122517655_122548655_122548843_122558374_122558476_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
62047	chrX	-	1062	5	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	916.885352702289	2	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537546	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7534746_7535165_7535257_7535662_7535750_7535841_7535998_7537381
62048	chr11	+	1024	1	Antisense	novelGene_ENSMUSG00000034993.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGGGAGGATGAGGCTGA	1575	False	NA	NA	False	NA	NA	NA	101349590	101350614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_101349600_101350600
62049	chr11	-	1570	3	Intergenic	novelGene_2461	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	85	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGAGATAATGCTGTGGC	783	False	NA	NA	False	NA	NA	NA	95863861	95861805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_95862360_95862695_95863097_95863246
62050	chr14	-	2077	10	FSM	ENSMUSG00000022094.16	ENSMUST00000022688.10	2098	10	10	11	0	-11	multi-exon	TRUE	canonical	1	1	junction_5	4.44999653211129	7	24	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCAGTGGTCATGGTT	NA	False	NA	NA	False	NA	NA	NA	70588864	70543756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_70544262_70546098_70546284_70547206_70547415_70547531_70547721_70548304_70548425_70553112_70553283_70553886_70554074_70556110_70556390_70568717_70568816_70588728
62051	chr1	-	2849	6	ISM	ENSMUSG00000038496.17	ENSMUST00000045560.15	2974	7	10351	1	-7865	0	3prime_fragment	FALSE	canonical	1	1	junction_5	3.22490309931942	10	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTGGTTATTTCAT	NA	False	NA	NA	False	NA	NA	NA	83005818	82990244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_82991711_82992423_82992566_82997052_82997246_83000054_83000863_83003946_83004102_83005733
62053	chr14	+	2253	1	Intergenic	novelGene_600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTGCCTGCTAGCTTAA	NA	False	NA	NA	False	NA	NA	NA	68108415	68110668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_68108400_68110700
62056	chr11	+	2085	11	NNC	ENSMUSG00000017221.15	novel	2148	12	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	440.193412036119	1	127	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGTGCACGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	98573422	98586804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584627_98584735_98584963_98585149_98586348
62057	chr6	-	854	3	NNC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	36.5	14	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	NA	NA	NA	72339376	72336696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72337331_72338420_72338523_72339258
62058	chr15	-	1646	7	NIC	ENSMUSG00000035845.18	novel	2130	10	NA	NA	65	3686	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	17.9691092959247	15	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTCTGATAAATTGGCT	9342	False	NA	NA	False	NA	NA	NA	88703423	88695124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703170
62059	chr12	+	1874	2	Antisense	novelGene_ENSMUSG00000056458.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGCCTTAGCAACCGCCAG	NA	False	NA	NA	False	NA	NA	NA	110798974	110807353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110800675_110807179
62060	chr16	+	939	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	-397	-151	-2	-1	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	147	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGTGTACATATTTATT	NA	False	NA	NA	False	NA	NA	NA	35892052	35912480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
62061	chrX	+	1419	6	ISM	ENSMUSG00000025261.19	ENSMUST00000112622.8	14168	81	94874	544	5864	-544	3prime_fragment	FALSE	canonical	3	567	junction_3	37.6063824370279	4	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACTCTTCATAACTCAC	NA	False	NA	NA	False	NA	NA	NA	150713117	150717869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
62062	chr12	-	3781	17	NIC	ENSMUSG00000021003.11	novel	3832	17	NA	NA	505	-31	combination_of_known_junctions	FALSE	canonical	1	2	junction_16	9.17686459255012	5	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGTCATCACAGCAC	NA	False	NA	NA	False	NA	NA	NA	98224537	98168583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_98170347_98173652_98173730_98174969_98175134_98179240_98179419_98180591_98180743_98182509_98182597_98188858_98188949_98193426_98193555_98197674_98197800_98200500_98200657_98208900_98209032_98212512_98212552_98218268_98218409_98220423_98220538_98222885_98222950_98223130_98223200_98224232
62063	chr4	+	2658	5	FSM	ENSMUSG00000073988.14	ENSMUST00000121491.8	2862	5	197	7	-153	-7	multi-exon	FALSE	canonical	3	35	junction_1	15.2212844398888	80	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAACCATGGTGTTTAT	214	False	NA	NA	False	NA	NA	NA	20008203	20030463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_20008347_20014630_20014785_20021191_20021386_20023784_20023896_20028407
62065	chr17	+	1537	1	NIC	ENSMUSG00000024084.9	novel	2059	7	NA	NA	11838	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACAGAATAACTATTGCC	NA	False	NA	NA	False	NA	NA	NA	79396268	79397805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_79396300_79397800
62066	chr15	-	882	4	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	154.273206430093	4	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8733	False	NA	NA	False	NA	NA	NA	85695250	85691172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695160
62068	chr6	-	695	2	Genic_Genomic	ENSMUSG00000030126.18	novel	2697	1	NA	NA	-105	-2014	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTTGGTTATTATGTA	NA	False	NA	NA	False	NA	NA	NA	116151379	116150591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_116151068_116151160
62069	chr4	-	2198	9	NNC	ENSMUSG00000029027.10	novel	1634	8	NA	NA	65	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	16.1767580188368	20	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATGTCAAAATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	154059443	154048906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154056342_154056518_154057064_154057136_154057236_154057426_154059025_154059153_154059323
62070	chr4	-	799	2	FSM	ENSMUSG00000028843.9	ENSMUST00000136408.2	368	2	-8	-423	-6	-4	multi-exon	FALSE	canonical	3	1437	junction_1	0	435	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGCTGACTGCTTGTG	9270	False	NA	NA	False	NA	NA	NA	133856056	133854727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133855397_133855926
62071	chr5	+	2922	27	Antisense	novelGene_ENSMUSG00000106825.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	23	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGTGTACTATCCTCGG	NA	False	NA	NA	False	NA	NA	NA	120673810	120701819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_120674289_120675624_120675707_120675876_120676016_120677065_120677151_120677272_120677340_120677848_120677901_120678638_120678755_120679942_120680033_120680516_120680590_120681404_120681516_120682475_120682551_120683139_120683189_120683317_120683380_120685513_120685561_120686001_120686066_120686337_120686387_120687557_120687681_120687990_120688110_120691510_120691610_120691818_120691877_120692340_120692374_120693195_120693287_120693932_120694064_120694536_120694649_120695832_120696011_120698279_120698411_120701611
62072	chrX	+	2174	11	NNC	ENSMUSG00000041658.13	novel	2258	11	NA	NA	-3	18229	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	82.4209318073995	23	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTATTGCAAAAAAAAAAAA	3173	False	NA	NA	False	NA	NA	NA	151922973	151973168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151972527
62073	chr4	-	1238	10	NIC	ENSMUSG00000028391.17	novel	1440	11	NA	NA	1	-100	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	62.492666236394	2	15	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	62389123	62371970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
62074	chr3	-	1344	4	FSM	ENSMUSG00000027953.14	ENSMUST00000144777.8	1332	4	-15	3	-14	-3	multi-exon	FALSE	canonical	3	133	junction_3	10.1434160364686	160	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCTGCAGAGTGATGT	NA	False	NA	NA	False	NA	NA	NA	89177847	89175557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133
62076	chr12	-	1649	2	Antisense	novelGene_ENSMUSG00000034501.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	288	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCGCTCGTGCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	72589640	72583156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_72583312_72588146
62077	chr6	+	1039	3	NIC	ENSMUSG00000072770.10	novel	1498	5	NA	NA	444	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	56.5	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTTGTCGTTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	125027373	125031157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125027613_125027809_125027905_125030452
62079	chr3	-	2941	7	NNC	ENSMUSG00000044313.14	novel	3558	7	NA	NA	22	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1.52752523165195	14	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGGTTTCATGTGATAT	NA	False	NA	NA	False	NA	NA	NA	101743517	101720994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_101722569_101725938_101726134_101726681_101726861_101730555_101730848_101734046_101734188_101742309_101742581_101743228
62080	chr19	+	1669	11	FSM	ENSMUSG00000024786.10	ENSMUST00000113528.2	1562	11	-111	4	-32	2	multi-exon	FALSE	canonical	3	12	junction_2	3.41906419945575	70	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCTACTGCCCTGAGG	8006	False	NA	NA	False	NA	NA	NA	6234385	6274251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6234613_6245693_6245811_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
62081	chr9	+	781	3	ISM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	10574	-7	10544	7	3prime_fragment	FALSE	canonical	3	41	junction_1	28	243	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTTCCCTGGTAGTG	3025	False	NA	NA	False	NA	NA	NA	62775959	62783210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_62776100_62778547_62778737_62782758
62082	chr5	+	1545	3	NNC	ENSMUSG00000053178.6	novel	1368	2	NA	NA	25	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	2	484	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACATTTATTTTGTATG	NA	False	NA	NA	False	NA	NA	NA	4242391	4247647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_4242419_4245994_4246201_4246335
62083	chr7	+	2301	5	ISM	ENSMUSG00000030897.6	ENSMUST00000033187.6	2484	6	318	0	264	0	3prime_fragment	FALSE	canonical	1	1	junction_1	2.29128784747792	26	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGCACTGGGTTTATCT	NA	False	NA	NA	False	NA	NA	NA	105054092	105057949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_105054198_105054376_105054484_105054688_105055335_105056007_105056358_105056856
62087	chr12	+	2745	6	NIC	ENSMUSG00000021203.16	novel	424	4	NA	NA	-24	-12	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	32.5047688808888	1	112	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGTTTCTATAAACAACT	8439	False	NA	NA	False	NA	NA	NA	103355219	103372586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_103355368_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
62088	chr5	-	1593	10	FSM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	14	10	14	-6	multi-exon	FALSE	canonical	3	93	junction_7	48.631900316511	174	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCTCACCGGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	110256049	110251850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
62090	chr4	+	4129	2	Antisense	novelGene_ENSMUSG00000008575.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	79	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTAGGGGATTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	82413215	82423303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_82417011_82422969
62091	chr18	-	2401	1	Intergenic	novelGene_4528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTCTGCCACATTGTGG	6128	False	NA	NA	False	NA	NA	NA	35702290	35699889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_35699900_35702300
62092	chr6	-	1516	1	FSM	ENSMUSG00000051695.7	ENSMUST00000053015.7	1830	1	312	2	312	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1382	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCGTATTTGAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	86502991	86501475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86501500_86503000
62094	chr15	-	1152	9	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	3	-1449	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1178.16252592756	1	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTAAGTCGGTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	10485992	10476313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_10476683_10476892_10477015_10478750_10478876_10479142_10479233_10479334_10479385_10479669_10479738_10481801_10481846_10483380_10483493_10485820
62096	chr11	+	3122	1	NIC	ENSMUSG00000009090.18	novel	3942	21	NA	NA	-8287	-6979	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTTTACCCAAACTGTC	NA	False	NA	NA	False	NA	NA	NA	4972689	4975811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4972700_4975800
62097	chr15	-	1473	3	Antisense	novelGene_ENSMUSG00000115093.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	5	45	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATCTGGTGTTGTATTAT	NA	False	NA	NA	False	NA	NA	NA	6074155	6054172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_6055316_6073729_6073988_6074083
62098	chr4	+	4125	10	ISM	ENSMUSG00000033948.4	ENSMUST00000044823.4	5582	14	88315	17	88315	-17	3prime_fragment	FALSE	canonical	3	19	junction_7	3.55902608401044	11	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTTTTCTAAAAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	116822887	116846444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116822973_116830067_116830245_116832392_116832540_116833033_116833172_116836620_116836882_116837081_116837218_116837971_116838130_116841879_116842044_116842878_116842961_116843667
62100	chr8	-	1616	2	Antisense	novelGene_ENSMUSG00000055932.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCTTGAACTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	92327971	92325572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_92326999_92327781
62101	chr1	+	2223	13	NNC	ENSMUSG00000049439.14	novel	2223	13	NA	NA	12	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	29.029080247228	1	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCACTCTATTTGGAGG	NA	False	NA	NA	False	NA	NA	NA	60382493	60427207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_60382617_60391279_60391330_60392067_60392235_60393648_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
62102	chr11	+	1378	6	NIC	ENSMUSG00000006784.15	novel	2240	12	NA	NA	4137	-4	intron_retention	FALSE	canonical	3	29	junction_1	2.60768096208106	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATCTTGAGTGACACT	2559	False	NA	NA	False	NA	NA	NA	100444509	100462785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
62104	chr2	+	1053	1	Intergenic	novelGene_2699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTGTGCTATATAACC	NA	False	NA	NA	False	NA	NA	NA	122202531	122203584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_122202500_122203600
62105	chr9	+	1296	5	NIC	ENSMUSG00000040652.17	novel	1843	6	NA	NA	-6	272	intron_retention	FALSE	canonical	3	365	junction_4	22.3983816379666	1	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTTAGTGTTATTCTGG	4641	False	NA	NA	False	NA	NA	NA	65583866	65597071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65584048_65593477_65593636_65595079_65595256_65596102_65596189_65596376
62107	chr5	+	1420	8	FSM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	3	3	3	0	multi-exon	FALSE	canonical	3	430	junction_2	50.1141553997328	196	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACATCCGACTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	146885517	146892413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
62109	chr15	+	1451	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	104	0	-37	0	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	247	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTTACGGTTCAG	95	False	NA	NA	False	NA	NA	NA	31224563	31274487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
62110	chr11	+	1421	5	FSM	ENSMUSG00000001313.13	ENSMUST00000134980.2	831	5	158	-748	158	0	multi-exon	FALSE	canonical	3	18	junction_1	62.3097103186975	134	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	8452	False	NA	NA	False	NA	NA	NA	101356467	101362679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
62111	chr11	-	1402	8	FSM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	-5	0	-5	0	multi-exon	FALSE	canonical	3	12	junction_6	18.5681315754731	246	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	72252704	72235547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
62112	chr17	+	1088	6	NNC	ENSMUSG00000060586.12	novel	782	5	NA	NA	-157	1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	77.2253844276608	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	34528391	34535174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34528466_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
62113	chr15	+	1503	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	0	552	0	-552	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTAAATGCGAGTGGACT	1147	False	NA	NA	False	NA	NA	NA	78912649	78914152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78912600_78914200
62114	chr15	+	2145	4	Antisense	novelGene_ENSMUSG00000053411.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTGTACCCCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	79803859	79855324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79805639_79807671_79807739_79814787_79814833_79855070
62115	chr2	+	1579	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173997.2	440	4	-114	-1025	-114	0	multi-exon	FALSE	canonical	2	17	junction_1	361.719351001421	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGTTTGAGGTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	172864116	172876527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172864288_172864584_172864709_172865119_172865175_172875298
62117	chr6	-	477	1	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTAACACACCAAGTTGT	7520	False	NA	NA	False	NA	NA	NA	122691544	122691067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122691100_122691500
62119	chr16	-	2329	11	FSM	ENSMUSG00000022747.18	ENSMUST00000137035.8	4123	11	163	1631	81	-3	multi-exon	FALSE	canonical	1	1	junction_6	1.74355957741627	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAAAACCTTAAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	58343626	58290118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810_58327978_58343438
62120	chr19	-	3073	1	ISM	ENSMUSG00000052942.14	ENSMUST00000162022.8	7514	11	418128	26	21957	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTAAAGCTTTTATACAT	NA	False	NA	NA	False	NA	NA	NA	28239349	28236276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_28236300_28239300
62121	chrX	-	1923	13	FSM	ENSMUSG00000009596.10	ENSMUST00000009740.9	1933	13	-33	43	-33	-43	multi-exon	FALSE	canonical	3	9	junction_2	4.16999866773227	61	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATAAGACCCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	133377272	133360909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371128_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
62123	chr3	-	1613	16	NNC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.619245907812	1	76	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTTCATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	95662127	95647285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95647446_95648673_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95653941_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660420_95662069
62124	chr14	-	2300	1	Intergenic	novelGene_636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTAATCATAAGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	100259465	100257165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_100257200_100259500
62125	chr5	-	1043	8	NNC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	-6	59	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	816.008178230326	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTTAGAGTGCTTTCAG	NA	False	NA	NA	False	NA	NA	NA	30278590	30266002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276224_30276308_30276631_30276706_30278358
62126	chr14	+	1038	9	NIC	ENSMUSG00000021996.17	novel	1988	9	NA	NA	9	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	441.393514196799	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTGGTTTAAATTGTTA	NA	False	NA	NA	False	NA	NA	NA	74969769	74987284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983162_74987084
62127	chr8	+	1941	9	ISM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	145	2	91	-2	intron_retention	FALSE	canonical	0	0	junction_3	391.220126655058	6	35	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTCTGATCTGGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	106024439	106032000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064
62128	chr3	-	1510	5	ISM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	15252	14	15252	-14	3prime_fragment	FALSE	canonical	3	348	junction_4	24.2628831757481	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATGCTGCCTACAAGGT	5637	False	NA	NA	False	NA	NA	NA	87777663	87766223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889
62129	chr11	-	1522	8	FSM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	-23	7	-1	-7	multi-exon	FALSE	canonical	3	24	junction_7	14.9652659072089	122	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAATACAGTTTTGGAC	4296	False	NA	NA	False	NA	NA	NA	106670364	106659085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669784
62130	chr13	+	1677	8	NNC	ENSMUSG00000021514.19	novel	2909	8	NA	NA	-187	-1779	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20.815025969776	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGCACTTATAACTGCAA	NA	False	NA	NA	False	NA	NA	NA	65426440	65443830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_65426657_65426743_65426913_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413
62131	chr4	-	926	1	Intergenic	novelGene_1974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGTGTAAACTGAGAACA	NA	False	NA	NA	False	NA	NA	NA	132464578	132463652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_132463700_132464600
62132	chr4	-	1338	1	NIC	ENSMUSG00000028885.9	novel	2006	8	NA	NA	22939	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAACAGTGCAACCGTGAG	2277	False	NA	NA	False	NA	NA	NA	132461624	132460286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132460300_132461600
62134	chr10	+	1303	9	Antisense	novelGene_ENSMUSG00000034748.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGCCGCACGGGAACAATA	4407	False	NA	NA	False	NA	NA	NA	81457629	81463381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_81457911_81458239_81458513_81458581_81458706_81459824_81459909_81459982_81460079_81460892_81460950_81461548_81461733_81462323_81462454_81463307
62135	chr11	-	1141	6	NIC	ENSMUSG00000020687.14	novel	1863	11	NA	NA	-7	3432	intron_retention	FALSE	canonical	3	170	junction_1	36.1076169249647	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTAGGAGGACCAACTG	2059	False	NA	NA	False	NA	NA	NA	104441453	104419130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
62136	chr9	+	483	1	Intergenic	novelGene_1059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTTGGTTTGTAAG	9892	False	NA	NA	False	NA	NA	NA	57438076	57438559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_57438100_57438600
62137	chr1	-	1692	11	NNC	ENSMUSG00000006299.14	novel	1817	11	NA	NA	16	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	509.642227449806	2	105	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTCCCATTGGCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	74323823	74319013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320706_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323676
62138	chr8	-	696	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	77	4129	77	190	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAACCAAATATCATGGAT	NA	False	NA	NA	False	NA	NA	NA	127672513	127661545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
62139	chr17	-	3086	10	Antisense	novelGene_ENSMUSG00000023952.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	103	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTACCGCCGGCCCCCC	7395	False	NA	NA	False	NA	NA	NA	46480266	46472168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_46472287_46475119_46475757_46475908_46476108_46476378_46476555_46476702_46476930_46477234_46477371_46477515_46477574_46478145_46478319_46478649_46478814_46479068
62140	chr9	-	1767	7	NNC	ENSMUSG00000032400.19	novel	1047	11	NA	NA	-2	510	intron_retention	FALSE	canonical	0	0	junction_2	154.501797903958	1	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTCCAAACCCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	64080190	64068142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64068259_64068652_64068724_64068839_64068965_64069845_64070046_64071628_64072741_64075894_64075947_64080099
62145	chr7	+	1400	3	FSM	ENSMUSG00000059824.13	ENSMUST00000211513.2	1156	3	-206	-38	-25	38	multi-exon	FALSE	canonical	3	23	junction_1	20	55	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCAGCTGTTGTGGCGG	NA	False	NA	NA	False	NA	NA	NA	45354486	45359576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45355187_45357683_45357896_45359088
62147	chr7	+	1730	10	FSM	ENSMUSG00000030805.15	ENSMUST00000121705.8	1316	10	-437	23	-233	-23	multi-exon	FALSE	canonical	3	172	junction_3	22.9965107390847	182	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	127440702	127448149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740
62148	chrX	-	1459	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	-27	17	-27	-17	multi-exon	FALSE	canonical	3	94	junction_1	0	371	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATACTCGTAGCCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	37723991	37719678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37721001_37723854
62149	chr16	+	960	4	NNC	ENSMUSG00000022516.11	novel	1162	4	NA	NA	-1	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	257.335492218923	19	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCATGTTGCTTCTGAGT	94	False	NA	NA	False	NA	NA	NA	4756974	4758879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_4757158_4757241_4757503_4758059_4758400_4758703
62150	chr13	-	1423	3	Antisense	novelGene_ENSMUSG00000050002.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	172	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCGGGGCAGGTTCCTC	NA	False	NA	NA	False	NA	NA	NA	58312480	58305473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_58305568_58307957_58308051_58311244
62152	chr11	+	2553	10	ISM	ENSMUSG00000003119.15	ENSMUST00000003203.14	4837	13	17749	85	662	-85	3prime_fragment	FALSE	canonical	3	90	junction_1	7.60766345272164	4	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGCATCATAAGAAATTTAA	NA	False	NA	NA	False	NA	NA	NA	98111888	98137445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042
62156	chr3	-	1602	10	FSM	ENSMUSG00000028115.17	ENSMUST00000107195.9	1810	10	199	9	55	-9	multi-exon	TRUE	canonical	1	1	junction_9	2.53859103528797	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTTAAGTCTGTGCCTA	NA	False	NA	NA	False	NA	NA	NA	95158305	95148590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95149173_95150042_95150142_95150308_95150396_95151452_95151585_95152295_95152399_95152960_95153144_95155886_95156112_95157116_95157182_95157477_95157574_95158275
62157	chr2	+	1078	8	Antisense	novelGene_ENSMUSG00000039536.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTGCTCCAGAACAGCC	NA	False	NA	NA	False	NA	NA	NA	166791171	166796893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_166791275_166791658_166791748_166792148_166792272_166792698_166793016_166793182_166793265_166794246_166794395_166795129_166795272_166796819
62158	chr10	-	1112	5	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	3435	206	-171	-190	3prime_fragment	FALSE	canonical	3	1924	junction_2	87.0125709308718	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTAACCTGCCCAGGGTT	NA	False	NA	NA	False	NA	NA	NA	127354820	127353197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660
62159	chr4	+	1077	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-54	3413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	155.179895605069	322	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586429	146627265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146616526_146616611_146619877_146620005_146621233_146621333_146626770
62160	chr1	-	778	2	FSM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	381	1876	381	-1876	multi-exon	FALSE	canonical	3	22	junction_1	0	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCATCTGGGAGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	184615034	184605998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_184606625_184614882
62161	chr12	-	581	6	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	combination_of_known_splicesites	TRUE	canonical	1	227	junction_4	6166.61245741939	5	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685880	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685578_28685663_28685854
62162	chr11	+	2039	10	Antisense	novelGene_ENSMUSG00002076211.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	64	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGGAGGGACCCAGGGA	NA	False	NA	NA	False	NA	NA	NA	106054150	106084405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106055040_106055537_106055788_106058637_106058743_106059132_106059288_106061767_106061903_106061980_106062097_106064085_106064199_106064505_106064607_106077949_106077999_106084279
62163	chr1	-	910	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_3	893.748671327684	15	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCACGAGCTTTGGTTC	2345	False	NA	NA	False	NA	NA	NA	93729621	93720304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726142_93728523_93728633_93729419
62164	chr8	-	1444	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	-178	9	34	-9	multi-exon	FALSE	canonical	3	158	junction_2	11.5854314646552	26	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACACAGTGGCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	106434743	106430292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
62165	chr8	+	2782	20	NNC	ENSMUSG00000034112.10	novel	3222	27	NA	NA	33887	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	3.12615629577211	17	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCTCTCTCTCTGCTTG	NA	False	NA	NA	False	NA	NA	NA	120460695	120484457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120461177_120461248_120461318_120461965_120462042_120465132_120465200_120469068_120469194_120469331_120469430_120471056_120471159_120472252_120472343_120474352_120474455_120474893_120475051_120475762_120475934_120476509_120476610_120476699_120476751_120477898_120478066_120479526_120479596_120479682_120479800_120480940_120481089_120482276_120482376_120482713_120482856_120484106
62166	chr7	-	1545	15	NIC	ENSMUSG00000030720.17	novel	1571	14	NA	NA	-4	0	combination_of_known_junctions	TRUE	canonical	3	16	junction_11	50.3199964310047	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	126182538	126171257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182171_126182273_126182474
62167	chr8	-	2769	10	NNC	ENSMUSG00000045636.17	novel	4148	12	NA	NA	4668	-2021	intron_retention	FALSE	non_canonical	0	0	junction_5	38.0266313438099	4	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAATGTTCTTCACCAGA	NA	False	NA	NA	False	NA	NA	NA	41503152	41446109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41453906_41455337_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021
62168	chr8	+	1644	9	NNC	ENSMUSG00000095941.4	novel	1649	10	NA	NA	59	53	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	7.68114574786861	99	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCGATTGTGTGTTTCAG	NA	False	NA	NA	False	NA	NA	NA	110827897	110838646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_110828167_110835615_110835750_110836017_110836077_110836409_110836623_110836712_110836955_110837152_110837295_110837438_110837593_110837930_110838005_110838289
62169	chr9	-	808	4	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	25	-34	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	226.851395313222	106	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAGTGTAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	88601841	88570692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88571039_88597540_88597803_88598546_88598617_88601711
62170	chr19	+	2532	3	FSM	ENSMUSG00000034336.4	ENSMUST00000037636.4	3240	3	707	1	707	-1	multi-exon	FALSE	canonical	3	49	junction_2	0.5	29	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGACTCGTGCTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	47003843	47013765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_47004259_47010271_47010397_47011773
62171	chr8	-	2509	2	Antisense	novelGene_ENSMUSG00000037656.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGGGAGTTTGGAACAGG	NA	False	NA	NA	False	NA	NA	NA	23059620	23054563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_23055713_23058260
62172	chr18	-	1528	9	NIC	ENSMUSG00000024357.11	novel	1703	10	NA	NA	-1	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	47.6377935572167	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGTCTGTCTCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	35631948	35399450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35571319_35571434_35631843
62173	chr9	+	1474	9	FSM	ENSMUSG00000011958.18	ENSMUST00000117450.8	1465	9	-44	35	5	-35	multi-exon	FALSE	canonical	3	252	junction_7	18.7345769901538	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGATTAAATCAGCTTG	NA	False	NA	NA	False	NA	NA	NA	69896752	69911254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850
62174	chr3	-	3223	1	Antisense	novelGene_ENSMUSG00000027806.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCATTATTCTATTCCTC	4877	False	NA	NA	False	NA	NA	NA	58367578	58364355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_58364400_58367600
62175	chr11	+	935	6	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	975	329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2450.36957212581	1	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	95558864	95570863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95558978_95562212_95562375_95566007_95566111_95566395_95566513_95568876_95568973_95570519
62177	chr11	+	2684	15	ISM	ENSMUSG00000018507.17	ENSMUST00000018651.14	2909	16	1383	215	-204	1	3prime_fragment	FALSE	canonical	1	1	junction_1	4.86553896169326	25	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCAAGTCTTCTAGAAGT	8124	False	NA	NA	False	NA	NA	NA	62466746	62491126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_62466952_62469128_62469422_62471997_62472132_62473668_62473960_62475201_62475501_62480476_62480651_62480988_62481145_62481732_62481832_62483051_62483123_62483576_62483743_62484978_62485046_62485748_62486078_62487735_62487864_62489059_62489140_62490934
62178	chr11	+	489	6	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	5510	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1036.59183867133	1	22	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCCCCCCCCCAACCAAT	NA	False	NA	NA	False	NA	NA	NA	106152489	106153905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106152521_106153044_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
62179	chr4	-	1659	5	NNC	ENSMUSG00000028232.14	novel	2773	9	NA	NA	0	-9410	intron_retention	FALSE	canonical	0	0	junction_3	28.3460755661167	16	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATTTACATTTCCAATG	-11	True	NA	NA	False	NA	NA	NA	3574809	3559737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3560693_3564092_3564258_3569363_3569753_3570328_3570373_3574703
62180	chr3	+	830	7	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	0	-230	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	362.907586951095	1	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACCTGACAGTGTTGTGG	NA	False	NA	NA	False	NA	NA	NA	105866823	105874613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869337_105873088_105873190_105873672_105873742_105874478
62181	chr16	+	1157	8	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	0	-545	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	258.894825387154	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTATGGCTTTATCATGT	NA	False	NA	NA	False	NA	NA	NA	48130839	48139541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48130903_48131937_48132074_48134245_48134402_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139127_48139376
62183	chr19	+	1751	1	Intergenic	novelGene_1295	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGAAGAGAGAGAGAG	5282	False	NA	NA	False	NA	NA	NA	57651545	57653296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_57651500_57653300
62185	chr3	-	885	8	NNC	ENSMUSG00000033752.8	novel	875	8	NA	NA	13796	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	76.8661704735269	31	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	84049297	83995239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84049162
62186	chr19	-	1029	4	NIC	ENSMUSG00000118346.2	novel	818	5	NA	NA	6	-2	intron_retention	FALSE	canonical	3	161	junction_3	44.0302926025556	1178	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCATGGATTTCTTGA	5080	False	NA	27	True	NA	NA	NA	8751825	8749891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8750471_8750653_8750789_8750868_8751057_8751698
62188	chr7	-	1187	4	ISM	ENSMUSG00000030577.15	ENSMUST00000189718.7	3672	13	10584	-65	5554	63	3prime_fragment	FALSE	canonical	2	5	junction_1	0.471404520791032	42	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGGAGGGGAAAAGACTC	NA	False	NA	NA	False	NA	NA	NA	30567290	30565188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30566088_30566442_30566528_30566886_30567006_30567206
62189	chr9	-	1086	1	Intergenic	novelGene_1098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCCCCCTCATTTTTT	8561	False	NA	NA	False	NA	NA	NA	64206074	64204988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_64205000_64206100
62191	chr10	-	1156	1	Genic_Genomic	ENSMUSG00000025364.14	novel	NA	NA	NA	NA	6951	3	mono-exon	FALSE	NA	NA	NA	NA	NA	28	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTGTTCTCTTTGTGG	7082	False	NA	NA	False	NA	NA	NA	128394787	128393631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_128393600_128394800
62193	chr16	+	1248	1	Intergenic	novelGene_3644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGCTCAAGTGCCACAT	NA	False	NA	NA	False	NA	NA	NA	35519723	35520971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_35519700_35521000
62196	chr8	+	723	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	-35	-97	-35	97	mono-exon	FALSE	NA	NA	NA	NA	NA	5	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGACTCAGAGCTAAACAA	7082	False	NA	NA	False	NA	NA	NA	19542916	19543639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_19542900_19543600
62197	chr5	-	1957	1	FSM	ENSMUSG00000104705.2	ENSMUST00000199950.2	1200	1	-759	2	-759	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCATCGGTTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	113470278	113468321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113468300_113470300
62198	chr4	+	1952	2	ISM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	17	5	17	-5	intron_retention	FALSE	canonical	3	105	junction_1	0	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTGTGTTGTACTTCGT	NA	False	NA	NA	False	NA	NA	NA	127019855	127023432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_127019987_127021611
62199	chr12	-	1651	1	FSM	ENSMUSG00002076601.1	ENSMUST00020183435.1	275	1	-924	-452	-924	452	mono-exon	FALSE	NA	NA	NA	NA	NA	33	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAAGCTGTGTGTCTCGT	8342	False	NA	NA	False	NA	NA	NA	104998532	104996881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_104996900_104998500
62200	chr4	-	982	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	-12	1228	-12	428	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	646	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAACATAAAGGAAATCAAT	NA	False	NA	NA	False	NA	NA	NA	151946173	151876258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
62201	chr18	-	2315	1	Intergenic	novelGene_4489	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCTCACAGTCCAACCACG	NA	False	NA	NA	False	NA	NA	NA	3866455	3864140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_3864100_3866500
62203	chr13	+	1783	10	FSM	ENSMUSG00000037816.11	ENSMUST00000046974.5	1798	10	-23	38	-23	-32	multi-exon	FALSE	canonical	3	14	junction_8	4.29469957557504	68	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAGAATGTAATTAAAAT	NA	False	NA	NA	False	NA	NA	NA	50571876	50587767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586206_50586383_50586463_50586592_50587333
62205	chr9	-	1560	6	ISM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	62757	12	1678	-12	3prime_fragment	FALSE	canonical	3	169	junction_1	11.0272390016722	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAAATGGAAGCACTTGT	NA	False	NA	NA	False	NA	NA	NA	34965412	34957883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358
62206	chr5	-	1816	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	49	-6	intron_retention	FALSE	canonical	3	179	junction_7	22.3597670755639	10	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCTCACCGGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	110255528	110251850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925
62207	chr9	-	1576	11	NIC	ENSMUSG00000010651.5	novel	1689	12	NA	NA	42	-28	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	62.7095686478547	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTGATCTTGGTTGCAG	NA	False	NA	NA	False	NA	NA	NA	118986119	118977118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982993_118983074_118984812_118984871_118985658_118985753_118985891
62208	chr9	-	1374	11	ISM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	248	41634	0	-5490	5prime_fragment	FALSE	canonical	3	45	junction_4	8.41189633792524	3	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATTTTCCTGGTACCA	NA	False	NA	NA	False	NA	NA	NA	87137341	87113263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_87113513_87114031_87114224_87119885_87120003_87120406_87120438_87121867_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
62209	chr13	-	1705	14	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	134	-191	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	293.914208792596	1	102	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	NA	False	NA	NA	NA	104953327	104767838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938705_104940758_104940863_104941425_104941518_104943140_104943289_104944227_104944341_104947724_104947822_104953227
62210	chr7	+	874	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	-3	157	-3	3	multi-exon	FALSE	canonical	2	274	junction_1	67.0834368529222	2854	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCCTCTCTCTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	27147399	27165412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
62211	chrX	-	2725	1	Antisense	novelGene_ENSMUSG00000081858.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATTTTCGACTTTTAGC	NA	False	NA	NA	False	NA	NA	NA	17120511	17117786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_17117800_17120500
62212	chr11	+	1156	5	FSM	ENSMUSG00000020812.19	ENSMUST00000153405.3	1151	5	-8	3	0	-3	multi-exon	FALSE	canonical	3	112	junction_4	29.8862426544388	814	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTAACTTGGTAGCATT	NA	False	NA	NA	False	NA	NA	NA	116562494	116566616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116562583_116562989_116563565_116564763_116564898_116565125_116565202_116566333
62213	chr5	+	2969	6	FSM	ENSMUSG00000051596.16	ENSMUST00000114099.6	3141	6	181	-9	181	8	multi-exon	FALSE	canonical	1	3	junction_5	1.93907194296653	13	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCTTGCGAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	38434928	38461560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_38435169_38445240_38445378_38451832_38451892_38455200_38455332_38456966_38457875_38460066
62214	chr6	-	783	1	NIC	ENSMUSG00000029782.21	novel	3998	16	NA	NA	9497	515	mono-exon	FALSE	NA	NA	NA	NA	NA	89	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTCCATCACCTGAATG	NA	False	NA	NA	False	NA	NA	NA	30482681	30481898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30481900_30482700
62215	chr3	+	1804	13	NNC	ENSMUSG00000028085.13	novel	1820	12	NA	NA	0	-211	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	70.2080242327518	6	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTGAGCAGAATAAGTAT	NA	False	NA	NA	False	NA	NA	NA	85481425	85553675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_85481627_85483170_85483322_85497219_85497415_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85553501
62217	chr4	+	1380	12	Antisense	novelGene_ENSMUSG00000028559.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGGAATTCATCAGCATC	NA	False	NA	NA	False	NA	NA	NA	108919284	108940315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_108919530_108919661_108919798_108920562_108920660_108922833_108922965_108923070_108923125_108923323_108923436_108924111_108924196_108925558_108925732_108929139_108929228_108930012_108930133_108930236_108930347_108940285
62218	chr12	+	864	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	22	-3	-4	0	multi-exon	FALSE	canonical	0	0	junction_3	133.217449641137	1002	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	84820046	84821862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
62219	chr15	+	2706	8	FSM	ENSMUSG00000063296.6	ENSMUST00000080141.6	2717	8	-4	15	-4	-15	multi-exon	FALSE	canonical	3	72	junction_7	14.5195153683108	29	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTATATGCCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	94527126	94993964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_94527184_94535941_94536245_94612742_94612876_94777261_94777362_94829676_94829775_94909196_94909357_94972284_94972415_94992239
62220	chr12	+	1209	6	Antisense	novelGene_ENSMUSG00000020993.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	337	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGCCTGAGCCACTTCCG	8925	False	NA	NA	False	NA	NA	NA	59089915	59108239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_59090462_59091037_59091133_59094908_59094995_59097055_59097170_59098424_59098494_59107940
62222	chr5	+	922	6	NNC	ENSMUSG00000029621.15	novel	1632	10	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	152.675341820479	15	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTGCAAAAGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	145020689	145045559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145020783_145027962_145028057_145029267_145029367_145041529_145041702_145043854_145043946_145045186
62223	chr14	+	1266	1	NIC	ENSMUSG00000022064.11	novel	1546	4	NA	NA	1084	-5457	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGAGCTCCATCCCTGG	NA	False	NA	NA	False	NA	NA	NA	99338477	99339743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_99338500_99339700
62226	chr5	+	1431	13	NNC	ENSMUSG00000029017.14	novel	1615	13	NA	NA	23	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	179.066328493103	4	57	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCGTTAGTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	21942161	21962146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21942275_21943866_21943945_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948459_21950975_21951073_21951986_21952094_21953789_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
62227	chr6	+	3718	10	Antisense	novelGene_ENSMUSG00000041372.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	123	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATCAGAGGCACTGGGGAC	NA	False	NA	NA	False	NA	NA	NA	120179006	120194514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_120180879_120183438_120183569_120184084_120184237_120185865_120185936_120186189_120186356_120187055_120187363_120191703_120192460_120193232_120193296_120193516_120193612_120194407
62228	chr10	+	1500	9	NNC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	-1268	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	462.096513187451	1	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAACAGCCTCCCCCGTG	7386	False	NA	NA	False	NA	NA	NA	80637065	80640736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639653_80639723_80639805_80639861_80639907
62229	chr1	+	2690	2	FSM	ENSMUSG00000026096.15	ENSMUST00000153939.2	4005	2	-3	1318	0	708	multi-exon	FALSE	canonical	3	159	junction_1	0	24	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAATCCCAACCACTAAC	NA	False	NA	NA	False	NA	NA	NA	53352812	53356499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_53353018_53354014
62230	chr14	-	1323	10	NNC	ENSMUSG00000022023.7	novel	3704	10	NA	NA	-41	-115	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	112.461790493428	3	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCTTTTTTCATGTGAA	NA	False	NA	NA	False	NA	NA	NA	79718443	79699206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707596_79708135_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
62231	chr10	+	2243	2	Antisense	novelGene_ENSMUSG00002076916.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCGCGCGCAGGTCGGG	NA	False	NA	NA	False	NA	NA	NA	86538173	86541326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_86540260_86541169
62232	chr7	+	1367	15	NIC	ENSMUSG00000002963.18	novel	1770	17	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	62.5039182445258	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9513	False	NA	NA	False	NA	NA	NA	44506760	44512074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44506979_44507586_44507634_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
62234	chr5	+	919	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	2	234	junction_2	6599.03742677673	5	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTCCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	121343466	121347028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343919_121344734_121344874_121345209_121345259_121346453_121346639_121346844
62236	chr18	-	1238	12	ISM	ENSMUSG00000024451.10	ENSMUST00000042944.9	5219	33	17327	733	4182	33	3prime_fragment	FALSE	canonical	0	0	junction_1	0.655554777357089	3	12	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACAGCTGCTTCAGGAAC	NA	False	NA	NA	False	NA	NA	NA	38113300	38106414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_38106705_38107154_38107194_38107417_38107556_38107670_38107735_38108439_38108476_38108568_38108652_38108875_38109010_38109092_38109222_38111400_38111516_38111597_38111673_38112884_38112954_38113234
62238	chr3	+	3325	2	Intergenic	novelGene_3139	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	457	82	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACAACCTGGGGGCACGC	NA	False	NA	NA	False	NA	NA	NA	81020509	81024110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_81023026_81023301
62239	chr12	+	2216	15	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	-38	3	combination_of_known_junctions	FALSE	canonical	2	27	junction_13	36.2404808050278	26	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGAATGAAAGCCTGTT	NA	False	NA	NA	False	NA	NA	NA	111725351	111773148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111772441_111772509_111772748
62240	chr4	-	2542	18	NNC	ENSMUSG00000028559.18	novel	3134	21	NA	NA	5514	154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	130.418437569737	1	172	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATGTTTACTTTAAAGTA	NA	False	NA	NA	False	NA	NA	NA	108959714	108918657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919794_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943623_108944586_108944683_108948857_108948897_108958299_108958361_108959693
62241	chr3	+	1614	5	NNC	ENSMUSG00000041220.11	novel	5951	5	NA	NA	82	-672	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.033492150527	1	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGACAACTGTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	129326116	129427929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_129326142_129326296_129326418_129398689_129398822_129421968_129422084_129426708
62242	chr17	+	2891	1	Intergenic	novelGene_70	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGCCCTGAGCTCACAT	NA	False	NA	NA	False	NA	NA	NA	22734627	22737518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_22734600_22737500
62243	chr12	+	1906	15	NNC	ENSMUSG00000021115.16	novel	1742	15	NA	NA	-4	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	446.205984509671	1	118	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCCGGTCTTTTACACAA	NA	False	NA	NA	False	NA	NA	NA	105976546	106041654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976613_106002798_106002964_106009095_106009149_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022375_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037672_106037901_106039877_106039938_106041265
62244	chr7	+	921	3	ISM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	537	-6	-129	-2	3prime_fragment	FALSE	canonical	3	1035	junction_2	94.5	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTATTTTGAGTCCTT	3470	False	NA	NA	False	NA	NA	NA	3698058	3704009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3698227_3698350_3698621_3703526
62245	chr1	-	1069	8	FSM	ENSMUSG00000073481.10	ENSMUST00000068725.10	1917	8	239	609	-71	1	multi-exon	FALSE	canonical	3	760	junction_6	70.0437181264644	368	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGCTATTACGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	184577839	184545873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184577742
62246	chr3	-	605	2	ISM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	1611	-65	1611	-20	3prime_fragment	FALSE	canonical	3	2642	junction_1	0	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTTTTATAATCTTAA	NA	False	NA	NA	False	NA	NA	NA	89323713	89322798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89323271_89323580
62247	chr3	+	2113	8	Antisense	novelGene_ENSMUSG00000103741.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	133	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCTCCCGGTCGCAGCC	NA	False	NA	NA	False	NA	NA	NA	84403985	84489757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_84405186_84417109_84417290_84422939_84423097_84426787_84427006_84434984_84435103_84441892_84442007_84455254_84455340_84489716
62248	chr1	+	1115	1	Intergenic	novelGene_446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTGGTTTCCTTTCATTC	3591	False	NA	NA	False	NA	NA	NA	133023956	133025071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_133024000_133025100
62249	chr12	+	2003	1	ISM	ENSMUSG00000037486.19	ENSMUST00000111215.10	8887	12	77976	12	11072	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	52	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGTGAAATTAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	3554832	3556835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_3554800_3556800
62250	chr5	+	2647	3	NNC	ENSMUSG00000054720.13	novel	6976	4	NA	NA	-13457	2081	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	10.5	14	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATATTTTAAAGTTTTA	8913	False	NA	NA	False	NA	NA	NA	105693266	105756819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_105693317_105727333_105727476_105754364
62253	chr11	-	624	1	ISM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	22486	12	2866	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTAAAATGTCCACTGAAT	9030	False	NA	NA	False	NA	NA	NA	102885508	102884884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102884900_102885500
62256	chr8	-	2247	1	ISM	ENSMUSG00000051495.9	ENSMUST00000054960.9	5080	2	3425	19	3425	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	51	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTGGGAGCACTGAAT	NA	False	NA	94	True	NA	NA	NA	127317300	127315053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_127315100_127317300
62257	chr15	+	1033	6	NNC	ENSMUSG00000058655.10	novel	1548	9	NA	NA	-4051	-82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	329.390103069294	4	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTTGAGATGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	101990407	102005526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101994961_102005036
62258	chr6	-	922	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	2	-6	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	77.3356321497406	19	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTAATCCAGTTGTTCG	NA	False	NA	NA	False	NA	NA	NA	83483887	83457206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83483729
62259	chr10	-	1232	11	ISM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-139	19863	-40	8083	5prime_fragment	FALSE	canonical	3	104	junction_6	11.0742945599257	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCATGTCTCCTACGTC	1097	False	NA	NA	False	NA	NA	NA	76797761	76617553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
62260	chr15	+	2067	11	NNC	ENSMUSG00000022561.14	novel	2107	12	NA	NA	34	1	intron_retention	FALSE	non_canonical	0	0	junction_3	128.982324370435	1	83	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTGGGATCCTGGCCCGC	4866	False	NA	NA	False	NA	NA	NA	76215583	76219099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76215664_76216095_76216276_76216359_76216839_76216919_76217012_76217102_76217217_76217376_76217574_76217663_76217818_76217999_76218091_76218213_76218405_76218489_76218661_76218781
62261	chr11	-	1692	13	NNC	ENSMUSG00000004393.11	novel	1956	14	NA	NA	165	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	459.521460023601	1	74	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATAAAGATTCCAGCTGC	4680	False	NA	NA	False	NA	NA	NA	6217581	6209005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213963_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216399_6216511_6216673_6216833_6216972_6217417
62264	chr16	-	1342	6	Antisense	novelGene_ENSMUSG00000033031.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	15	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTAGCTCATCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	48826792	48821380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48821450_48821927_48822048_48822150_48822297_48824285_48824364_48824660_48824846_48826048
62266	chr13	+	1481	9	NIC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	-13	-3	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	636	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATACTTATTTTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	43519090	43548675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
62267	chr7	-	1115	4	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	9.62635271879577	191	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	0	True	NA	NA	False	NA	NA	NA	127021210	127018138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020980
62268	chr15	-	803	5	NIC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	9	3	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	489.075914352772	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTGTAGATGCAGAAAC	NA	False	NA	NA	False	NA	NA	NA	82128940	82118276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_82118711_82123493_82123586_82124079_82124160_82128333_82128414_82128823
62270	chr1	+	1017	5	NNC	ENSMUSG00000039323.19	novel	1307	4	NA	NA	64	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1534.25307560389	1646	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGTGTGTGTCTTACT	1354	False	NA	NA	False	NA	NA	NA	72863725	72891627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72863792_72864011_72864124_72888244_72888472_72888722_72888864_72891156
62271	chr2	-	2070	4	ISM	ENSMUSG00000026646.17	ENSMUST00000100458.4	2169	5	9496	13	9496	9	3prime_fragment	FALSE	canonical	3	203	junction_3	12.0277457017791	66	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTTACTTTCATCTTTC	9096	False	NA	NA	False	NA	NA	NA	3465960	3458630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_3459767_3460793_3460924_3463517_3463665_3465303
62272	chr7	+	1363	8	Antisense	novelGene_ENSMUSG00000002635.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTACGGTGGCCGACAGA	NA	False	NA	NA	False	NA	NA	NA	33884066	33896095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_33884240_33885722_33885865_33886212_33886421_33888775_33888882_33892160_33892532_33895490_33895552_33895696_33895863_33895959
62273	chr5	+	2123	3	NNC	ENSMUSG00000018604.19	novel	485	2	NA	NA	-22	-552	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	538	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTATGTAATTATTTGA	NA	False	NA	NA	False	NA	NA	NA	119818291	119822074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_119818378_119818472_119819131_119820695
62274	chr5	+	1405	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-29	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1388.83964357141	1	82	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATAATGCTTGAACTGAG	727	False	NA	NA	False	NA	NA	NA	77099594	77115295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099687_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114619_77115198
62275	chr11	+	1576	1	Genic_Genomic	ENSMUSG00000042298.19	novel	NA	NA	NA	NA	485	956	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGCCTCCTTACAGCT	NA	False	NA	NA	False	NA	NA	NA	62172794	62174370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_62172800_62174400
62276	chr5	+	1622	1	ISM	ENSMUSG00000029174.19	ENSMUST00000043893.13	6471	22	190409	5	51330	0	mono-exon	FALSE	NA	NA	NA	NA	NA	112	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTTCGTGTTGTCT	1688	False	NA	NA	False	NA	NA	NA	64507202	64508824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_64507200_64508800
62277	chr9	-	754	1	Intergenic	novelGene_1169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGTGACCAATCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	111352254	111351500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_111351500_111352300
62278	chr1	+	875	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-5	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9512.68242342237	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454442	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457239_86457910
62280	chr17	-	568	2	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	1284	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45879378	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878888_45878992
62283	chr8	-	1275	9	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_5	36.3825164055484	3	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	27713828	27687486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27690260_27690373_27690749_27690932_27692399_27692492_27713715
62285	chr12	-	531	4	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	1887	-14	-125	5prime_fragment	FALSE	canonical	3	7551	junction_2	151.078346121033	5	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCCGCGCCATCGAGAAG	NA	False	NA	NA	False	NA	NA	NA	111638731	111637681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111637782_111637858_111638014_111638199_111638408_111638663
62286	chr7	+	1117	3	NNC	ENSMUSG00000100153.3	novel	1437	2	NA	NA	-15	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.5	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTATTAAATGCAAGCTTG	NA	False	NA	NA	False	NA	NA	NA	119339133	119341423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_119339165_119339473_119340294_119341157
62287	chr17	-	996	4	NIC	ENSMUSG00000024177.10	novel	1006	5	NA	NA	-4	-24	intron_retention	FALSE	canonical	3	304	junction_1	22.7596133534821	1759	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATTAAAATTTTATGCTT	NA	False	NA	NA	False	NA	NA	NA	26314467	26310737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26311127_26312590_26312935_26313110_26313245_26314338
62288	chrX	-	862	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	39	2	39	-2	multi-exon	FALSE	canonical	3	901	junction_2	34	2837	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTAGTTCTTTAAA	4195	False	NA	NA	False	NA	NA	NA	134968946	134967314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_134967957_134968348_134968422_134968799
62290	chr1	+	1832	9	ISM	ENSMUSG00000025907.15	ENSMUST00000161327.8	5707	21	26651	428	145	-426	3prime_fragment	FALSE	canonical	3	76	junction_4	6.69771416230941	21	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAATTGAAAGTGTAAAT	6509	False	NA	NA	False	NA	NA	NA	6331153	6345373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_6331320_6333057_6333167_6333247_6333489_6334765_6334815_6335797_6335846_6338921_6338981_6340914_6341052_6342924_6342996_6344421
62292	chr16	+	1223	3	NIC	ENSMUSG00000022787.11	novel	566	2	NA	NA	126	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	60.5	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAATTTTGGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	32066344	32075901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32066447_32070640_32071137_32075276
62294	chr19	+	2649	1	FSM	ENSMUSG00000074811.4	ENSMUST00000099393.4	2666	1	4	13	4	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	34	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACAGAGGTTTCTTGTGC	NA	False	NA	NA	False	NA	NA	NA	45991950	45994599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_45992000_45994600
62296	chr15	-	1760	1	ISM	ENSMUSG00000048154.18	ENSMUST00000178486.9	19805	55	37730	25	3711	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	81	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAGAACATTTTAAA	9056	False	NA	NA	False	NA	NA	NA	98731334	98729574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98729600_98731300
62297	chr17	-	728	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	10	3	10	1	multi-exon	FALSE	canonical	3	300	junction_6	250.570959122472	3537	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGCCTTTTCTCTGTGAC	9262	False	NA	NA	False	NA	NA	NA	27158533	27156948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
62298	chr6	-	1152	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5452	9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	51.1218153042319	211	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGACTTTGCTTTGCTTGT	2736	False	NA	NA	False	NA	NA	NA	83675073	83669778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672606_83672689_83672797_83673961_83674051_83674952
62299	chr8	+	1602	13	FSM	ENSMUSG00000003808.19	ENSMUST00000156970.8	1708	13	96	10	96	-10	multi-exon	FALSE	canonical	3	23	junction_2	180.621996322584	1	79	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTAGGACTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	85583744	85595875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
62300	chr8	+	1040	8	NNC	ENSMUSG00000003037.17	novel	4550	8	NA	NA	-16	-3058	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	468.045174864869	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATGAATCTGTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	72915186	72934690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72933888_72934339_72934596
62301	chr11	+	3110	9	Antisense	novelGene_ENSMUSG00000039096.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGTGCCCAGCAGGGGTG	NA	False	NA	NA	False	NA	NA	NA	94431617	94439983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_94433473_94433705_94433811_94434119_94434174_94434379_94434532_94434933_94434997_94435247_94435612_94438984_94439186_94439289_94439431_94439808
62302	chr7	-	1655	2	FSM	ENSMUSG00000019429.8	ENSMUST00000094583.2	1625	2	-30	0	-30	0	multi-exon	FALSE	canonical	3	35	junction_1	0	213	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAATAATGTTTC	7636	False	NA	NA	False	NA	NA	NA	30555633	30553754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30555330_30555553
62303	chr10	-	861	7	Antisense	novelGene_ENSMUSG00000020056.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCCAAGTTCCTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	88081814	88037033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_88037153_88037671_88037771_88049506_88049573_88051732_88051935_88055109_88055222_88070254_88070321_88081617
62305	chr9	-	1000	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	-10	3	-3	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	1753	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTTTCCTTATTGCATG	NA	False	NA	NA	False	NA	NA	NA	114610927	114585906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
62306	ERCC-00108	+	974	1	FSM	ERCC-00108A	DQ668365	1005	1	25	6	25	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	151	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATAT	NA	False	NA	NA	False	NA	NA	NA	25	999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00108_+_0_1000
62307	chr17	-	1568	2	NNC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	14	-4063	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	32	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGCGCGCGTTTCC	3418	False	NA	NA	False	NA	NA	NA	71297511	71287993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71289518_71297467
62308	chr14	+	658	5	NNC	ENSMUSG00000012405.17	novel	1922	4	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5790.55370841166	23	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTGCTTAAAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	4198712	4200734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_4198738_4199235_4199418_4199652_4199713_4199753_4199790_4200379
62311	chr17	+	2027	3	ISM	ENSMUSG00000025738.9	ENSMUST00000235694.2	387	4	447	-1718	447	4	3prime_fragment	TRUE	canonical	3	16	junction_2	4	38	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAGTGGGTTATTATTT	NA	False	NA	NA	False	NA	NA	NA	26037479	26040233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26037557_26037869_26037934_26038347
62312	chr4	+	2362	1	Intergenic	novelGene_2107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGCAAACCGTATGCCT	9276	False	NA	NA	False	NA	NA	NA	146524261	146526623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146524300_146526600
62314	chr2	-	1039	6	NNC	ENSMUSG00000009549.15	novel	798	5	NA	NA	-23	335	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	586.084840274853	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTAATCTCCGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	118310152	118305995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_118306529_118306582_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
62315	chr1	+	1262	8	NIC	ENSMUSG00000050122.20	novel	4717	27	NA	NA	-22	-1	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	16.9440857179231	9	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGCAGATTTCTCCCTC	NA	False	NA	NA	False	NA	NA	NA	37139726	37180416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_37139908_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
62316	chr14	-	1809	5	NNC	ENSMUSG00000021930.15	novel	4002	5	NA	NA	36	319	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	62.5559749344537	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGGGTAATCATACTGA	NA	False	NA	NA	False	NA	NA	NA	61794171	61771434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_61772691_61777585_61777689_61783166_61783298_61787192_61787310_61793969
62317	chr12	+	1009	3	NNC	ENSMUSG00000097055.3	novel	1729	2	NA	NA	1117	520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGGGTGGCCTCACAAC	NA	False	NA	NA	False	NA	NA	NA	21469058	21470324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21469483_21469689_21470110_21470159
62318	chr2	+	1217	2	NNC	ENSMUSG00000014959.13	novel	2417	11	NA	NA	2569	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	0	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTTCTAAGTGGCG	NA	False	NA	NA	False	NA	NA	NA	70520725	70522069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_70520875_70521001
62320	chr4	+	398	1	FSM	ENSMUSG00000070572.8	ENSMUST00000117987.2	378	1	154	-174	154	174	mono-exon	FALSE	NA	NA	NA	NA	NA	41	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAACA	2068	False	NA	NA	False	NA	NA	NA	149541939	149542337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_149541900_149542300
62322	chr4	-	1425	1	NIC	ENSMUSG00000028950.4	novel	2863	6	NA	NA	9225	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	17	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTGTGTGTGTGGCTTCTT	6997	False	NA	NA	False	NA	NA	NA	152113800	152112375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152112400_152113800
62323	chr11	+	1807	10	FSM	ENSMUSG00000000378.16	ENSMUST00000000388.15	1858	10	51	0	28	0	multi-exon	TRUE	canonical	3	315	junction_9	41.5204843093617	54	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	6496937	6546744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
62324	chr10	+	583	6	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	-239	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1096.65133930525	2	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCCCTTGTGAATAAACC	NA	False	NA	NA	False	NA	NA	NA	80088909	80092595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80088992_80089493_80089590_80090689_80090833_80090923_80090971_80091757_80091847_80092469
62325	chrX	-	525	5	FSM	ENSMUSG00000087174.8	ENSMUST00000138460.8	3732	5	25	3182	-3	-35	multi-exon	FALSE	canonical	3	29	junction_1	38.5940409908058	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTACTCTTGAATAGCCC	NA	False	NA	NA	False	NA	NA	NA	104113705	104087641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
62327	chr7	+	823	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	193.245851659676	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	30262752	30264786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
62328	chr5	+	2982	19	NNC	ENSMUSG00000061288.14	novel	4467	21	NA	NA	87	-9611	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.79329001999479	3	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAATAAAATTAAGCAA	1473	False	NA	NA	False	NA	NA	NA	117258280	117402321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_117258405_117271749_117271841_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629
62329	chr15	-	681	4	Fusion	ENSMUSG00000023004.9_ENSMUSG00000072235.7	novel	1743	4	NA	NA	-83638	-11	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	28	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGAGTTTTGTTTCT	2178	False	NA	NA	False	NA	NA	NA	98935222	98829316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_-_98829554_98830057_98830295_98848551_98848658_98935121
62330	chr5	-	1075	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	-43	9	-43	4	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	981	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATGGGTGTGGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	110434095	110422156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
62331	chr7	+	1062	8	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	-16	-1	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	190.751467750525	46	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCGTTTTGGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30008185	30013727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30012897_30013024_30013343
62332	chr19	+	1133	9	Antisense	novelGene_ENSMUSG00000046230.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCTGTCGAGTACATT	NA	False	NA	NA	False	NA	NA	NA	16676252	16688213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_16676485_16678492_16678655_16680868_16680971_16681050_16681169_16681895_16682048_16683232_16683297_16684688_16684774_16687636_16687790_16688148
62333	chr19	+	2463	23	NNC	ENSMUSG00000046388.5	novel	552	3	NA	NA	-60125	-200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	20	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCCCCACAGAAGGAAGGT	NA	False	NA	NA	False	NA	NA	NA	16697785	16758267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_16697832_16699758_16699880_16701006_16701135_16702918_16703060_16712080_16712194_16712278_16712468_16718127_16718270_16718540_16718636_16719802_16719932_16720358_16720422_16722148_16722319_16723021_16723132_16723314_16723443_16726889_16726951_16727213_16727292_16727485_16727552_16729488_16729543_16731615_16731726_16736950_16737052_16737303_16737398_16739509_16739556_16743860_16743904_16758032
62334	chr7	+	2711	8	NNC	ENSMUSG00000040601.14	novel	4259	11	NA	NA	13877	243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.989743318610787	2	79	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTAAGTAGTGGTATGG	NA	False	NA	NA	False	NA	NA	NA	26148947	26174878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_26150245_26152781_26152941_26153459_26153625_26156450_26156619_26159063_26159235_26161865_26162038_26163518_26163690_26174470
62335	chr4	+	2177	1	Intergenic	novelGene_1931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCACACTCCAGGC	NA	False	NA	NA	False	NA	NA	NA	115706366	115708543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_115706400_115708500
62336	chr7	-	873	5	FSM	ENSMUSG00000003380.12	ENSMUST00000076961.9	899	5	27	-1	27	1	multi-exon	FALSE	canonical	3	706	junction_2	24.5051015096857	2227	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTCCTGGTATTTTCT	4522	False	NA	NA	False	NA	NA	NA	24672152	24669175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671740_24671951
62339	chr10	+	1260	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	61	0	-1	0	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	285	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6190	False	NA	NA	False	NA	NA	NA	80003672	80007489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
62340	chr9	+	2091	1	Antisense	novelGene_ENSMUSG00000049556.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGAGCCCAGTACCAGCA	NA	False	NA	NA	False	NA	NA	NA	56526412	56528503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_56526400_56528500
62341	chr17	+	1203	7	NIC	ENSMUSG00000007039.13	novel	682	4	NA	NA	33	-17	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	154.377693408802	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATTGACCTTTTAGATA	NA	False	NA	NA	False	NA	NA	NA	35278824	35281050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35278941_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
62343	chr13	-	4389	1	ISM	ENSMUSG00000051335.7	ENSMUST00000055341.7	6928	2	104538	1	103771	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	108	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGATTCCAGCCTGGTCT	2487	False	NA	NA	False	NA	NA	NA	43353110	43348721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_43348700_43353100
62345	chr9	-	826	2	FSM	ENSMUSG00000097195.11	ENSMUST00000182517.3	442	2	-410	26	-410	-15	multi-exon	FALSE	canonical	3	461	junction_1	0	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTGAAATAAAAAACATTC	NA	False	NA	NA	False	NA	NA	NA	88404428	88403133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403502_88403970
62348	chr10	-	2325	1	Intergenic	novelGene_3437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGGGTATTTAAGCAGC	NA	False	NA	NA	False	NA	NA	NA	54405560	54403235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_54403200_54405600
62350	chr8	-	1669	5	NNC	ENSMUSG00000037300.20	novel	2409	4	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_1	180.045133230532	13	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCACTCTAAAGTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	125448711	125434720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_125435912_125436641_125436713_125439355_125439432_125440927_125441023_125448475
62353	chr2	-	988	1	FSM	ENSMUSG00000087635.4	ENSMUST00000117516.2	727	1	-122	-139	-122	139	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGGAGCCTCCATCT	NA	False	NA	NA	False	NA	NA	NA	34540374	34539386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34539400_34540400
62354	chr2	+	985	8	Antisense	novelGene_ENSMUSG00000077733.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGCGCGTGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	10060867	10085243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_10060975_10063777_10063911_10064314_10064471_10068099_10068165_10068255_10068372_10068962_10069127_10073423_10073571_10085146
62355	chr2	+	2120	12	NNC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-46	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	94.0655653175613	1	131	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	NA	False	NA	NA	NA	180367125	180384073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180375605_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379485_180381598_180381728_180382318_180382375_180382505_180382536_180383075
62357	chr1	-	2787	18	FSM	ENSMUSG00000056220.15	ENSMUST00000070200.15	2856	18	50	19	15	-1	multi-exon	FALSE	canonical	0	0	junction_2	1.05882352941176	5	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAATTACCACTAGAAAC	3982	False	NA	NA	False	NA	NA	NA	149836991	149705387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_149705944_149716368_149716527_149717914_149718111_149727017_149727203_149733195_149733436_149736805_149736878_149740661_149740755_149740866_149741005_149747151_149747267_149748288_149748512_149755740_149755878_149761897_149762040_149763357_149763396_149776850_149776965_149778044_149778194_149797805_149797888_149808408_149808508_149836941
62359	chr2	-	1899	12	NIC	ENSMUSG00000056486.19	novel	4050	13	NA	NA	-1	-119	intron_retention	FALSE	canonical	1	16	junction_6	88.3547507691073	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAATAAAAATGCACCACAC	NA	False	NA	NA	False	NA	NA	NA	73605412	73442798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73509958_73510248_73537262_73537377_73540798_73540831_73546707_73546764_73551746_73551786_73605366
62360	chr12	-	1678	5	FSM	ENSMUSG00000020652.18	ENSMUST00000126017.2	1683	5	0	5	0	-5	multi-exon	FALSE	canonical	3	46	junction_4	19.0328663106743	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTGAGCTGAGCAGTTC	NA	False	NA	NA	False	NA	NA	NA	4283938	4265696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
62361	chr2	-	980	8	NNC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	103.48636901268	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6129	False	NA	NA	False	NA	NA	NA	181007144	181001107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_181001355_181001431_181001533_181002793_181002933_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
62362	chr8	-	1293	8	FSM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	19	-1	19	1	multi-exon	FALSE	canonical	1	3	junction_7	110.839468399582	705	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAACAGAAGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	106665057	106662369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664399_106664586
62363	chr14	-	777	3	NNC	ENSMUSG00000075486.11	novel	519	3	NA	NA	9	-60	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	218.5	25	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTTATATGAAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	101877875	101871261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_101871829_101874389_101874545_101877820
62364	chrX	-	2674	13	NIC	ENSMUSG00000086370.10	novel	2478	12	NA	NA	-3	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	1.16368667031408	16	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAACATTTTGATGGTATC	NA	False	NA	NA	False	NA	NA	NA	102660554	102613178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_102614482_102616105_102616168_102639536_102639614_102646647_102646696_102648820_102648916_102649063_102649226_102649923_102649989_102650529_102650633_102651142_102651399_102652909_102653023_102656628_102656802_102658670_102658799_102660465
62366	chr7	-	3223	4	NNC	ENSMUSG00000041328.17	novel	534	2	NA	NA	779	6001	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGACTGCACCTGCTAC	NA	False	NA	NA	False	NA	NA	NA	92296638	92286749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_92289544_92294749_92294846_92295995_92296160_92296469
62367	chrX	+	679	1	ISM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	18354	4	2086	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100491514	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_100491500_100492200
62368	chr8	+	621	7	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	64	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8476.39447065922	2	17	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAAAGCTGGGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	123829152	123831975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123829975_123830061_123830096_123830636_123830694_123831782
62369	chr11	+	1558	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-16	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	54.6479190978796	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGTTCTGAGTGACAGC	7102	False	NA	NA	False	NA	NA	NA	4168208	4172404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4168453_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
62371	chr5	-	1961	13	FSM	ENSMUSG00000029722.16	ENSMUST00000100544.11	2858	13	-13	910	0	-536	multi-exon	FALSE	canonical	3	27	junction_7	43.0686628794327	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGAGAGAAGCTAGGCACA	1797	False	NA	NA	False	NA	NA	NA	137682955	137649656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137658423_137658457_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
62372	chr3	-	994	6	FSM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	28	0	-16	0	multi-exon	FALSE	canonical	3	127	junction_5	11.5481600266016	526	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	89177849	89175552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
62373	chr6	-	493	1	NIC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	-120	-905	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAGGGAGGCAGCCAGCG	NA	False	NA	NA	False	NA	NA	NA	125146367	125145874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125145900_125146400
62374	chr7	-	970	6	FSM	ENSMUSG00000074227.13	ENSMUST00000108236.5	1211	6	241	0	241	0	multi-exon	FALSE	canonical	0	0	junction_2	398.697679953119	1410	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	710	False	NA	NA	False	NA	NA	NA	28981094	28955765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
62375	chr7	-	1111	4	NNC	ENSMUSG00000110040.2	novel	819	6	NA	NA	-5213	-4769	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	989.660884680539	1	43	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8842	False	NA	NA	False	NA	NA	NA	141941617	141929653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930476_141930569_141930669_141930762_141930824_141941488
62376	chr7	-	916	5	NNC	ENSMUSG00000025102.15	novel	887	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	146.75042589376	782	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTAGCAGTTTCGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	81439213	81431928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81432371_81432778_81432887_81435824_81435953_81438197_81438325_81439102
62377	chr12	-	2645	1	ISM	ENSMUSG00000041415.12	ENSMUST00000041987.8	9851	27	61554	12	4168	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	27	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCTGTTCACACTGTGT	NA	False	NA	NA	False	NA	NA	NA	104656657	104654012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_104654000_104656700
62378	chr7	+	968	3	NNC	ENSMUSG00000030825.20	novel	427	3	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	286	7	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGAGTGGTCGTGTC	NA	False	NA	NA	False	NA	NA	NA	45208656	45216743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45208897_45212338_45212432_45216108
62379	chr8	+	2241	1	Intergenic	novelGene_1614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATGTCCCAGACGGAACA	NA	False	NA	NA	False	NA	NA	NA	34274296	34276537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_34274300_34276500
62380	chr6	+	1817	11	NIC	ENSMUSG00000030166.15	novel	1693	12	NA	NA	-10	0	intron_retention	FALSE	canonical	3	31	junction_10	11.5104300527826	197	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCCTTTGGCTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	119879678	119899784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_119879797_119888008_119888103_119889962_119890065_119890859_119890954_119891130_119891199_119892194_119892314_119892927_119893004_119895547_119896039_119897070_119897152_119897767_119897990_119899432
62381	chr2	+	1309	11	ISM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	88	0	-10	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	529	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	10005	False	NA	NA	False	NA	NA	NA	30156820	30172160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
62382	chr18	-	1666	7	NNC	ENSMUSG00000025420.14	novel	1515	6	NA	NA	14133	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	10.5422430672456	4	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTCTGCTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	77120806	77097736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77110249_77110462_77120759
62383	chr11	-	816	2	Intergenic	novelGene_2429	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	312	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGGCCATGGTGGCATT	4759	False	NA	NA	False	NA	NA	NA	83458250	83454495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_83455094_83458032
62384	chr6	+	436	4	FSM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	194	425	-44	-4	multi-exon	FALSE	canonical	3	2623	junction_2	545.029866663796	530	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGCGTTTCTGCTGTTG	NA	False	NA	NA	False	NA	NA	NA	86348479	86355885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86348597_86352658_86352682_86353476_86353602_86355714
62387	chr1	-	680	6	NNC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3180.33598225093	3	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16174617	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16171579_16171943_16172161_16172713_16172824_16172915_16173005_16173733_16173909_16174588
62388	chr10	+	1124	9	FSM	ENSMUSG00000025351.15	ENSMUST00000219317.2	1109	9	-15	0	-15	0	multi-exon	FALSE	canonical	3	15	junction_1	1695.03832921265	175	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	False	NA	NA	False	NA	NA	NA	128736842	128748691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128737005_128744769_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
62392	chr3	-	2153	5	FSM	ENSMUSG00000028039.12	ENSMUST00000029673.10	2363	5	204	6	126	-6	multi-exon	FALSE	canonical	3	176	junction_1	13.4047566184545	114	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATGTAAATGTCTCTT	9393	False	NA	NA	False	NA	NA	NA	89230068	89221211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89222875_89223114_89223193_89223376_89223443_89223769_89224060_89230012
62393	chr11	-	1268	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	-27	-223	-11	-22	multi-exon	FALSE	canonical	3	22	junction_1	0	169	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAGATTTTACAATTAT	NA	False	NA	NA	False	NA	NA	NA	30936361	30926728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_30927747_30936111
62394	chr11	+	1123	2	NNC	ENSMUSG00000070327.15	novel	16716	67	NA	NA	-10088	-18135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTATACCCTCCCCATGCC	3213	False	NA	NA	False	NA	NA	NA	119358794	119360106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119359353_119359541
62395	chr9	-	1721	13	NNC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	-15	-31	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	97.8616866920973	1	110	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTATAATAAAGTGTTT	9792	False	NA	NA	False	NA	NA	NA	57672419	57658025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660862_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
62398	chr14	+	1649	8	FSM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	56	2778	41	497	multi-exon	FALSE	canonical	3	134	junction_7	47.5106862308097	40	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAATATGTTCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	20398383	20418632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20417913
62399	chr12	+	2079	3	ISM	ENSMUSG00000047022.19	ENSMUST00000153137.6	2158	13	82041	8126	31785	1683	internal_fragment	FALSE	canonical	3	42	junction_2	2	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTATGCTCTATAGTGTC	NA	False	NA	NA	False	NA	NA	NA	57410999	57505701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_57411021_57461101_57461197_57503738
62400	chr17	+	2151	8	NIC	ENSMUSG00000032796.9	novel	9526	63	NA	NA	-19	-6	intron_retention	FALSE	canonical	3	222	junction_1	10.9916480352408	105	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATTAATGGTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	68119381	68129636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_68119507_68120847_68120984_68122172_68123040_68123997_68124157_68124521_68124676_68125578_68125713_68128512_68128736_68129283
62401	chr13	+	1868	7	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-39	2298	multi-exon	TRUE	non_canonical	0	0	junction_6	53.6016687136594	1	90	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTGAAACCTGGAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	66261254	66328212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840_66326525_66327361_66327519_66327636
62402	chr8	+	899	4	NIC	ENSMUSG00000015013.10	novel	1659	5	NA	NA	-6	-1071	intron_retention	FALSE	canonical	3	528	junction_1	87.3473271231327	1434	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACGTTGTCCTGTGTC	5510	False	NA	NA	False	NA	NA	NA	123338372	123342328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123338433_123339804_123339978_123340659_123341127_123342129
62403	chr6	-	1125	9	FSM	ENSMUSG00000029759.10	ENSMUST00000031773.9	1837	9	53	659	0	-659	multi-exon	FALSE	canonical	3	12	junction_4	13.4350288425444	63	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGGAACTGTAATTATT	19	True	NA	NA	False	NA	NA	NA	5256233	5221510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
62404	chrX	-	3365	1	FSM	ENSMUSG00000087522.4	ENSMUST00000142240.2	1245	1	-325	-1795	-325	1795	mono-exon	FALSE	NA	NA	NA	NA	NA	1	159	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACATTTAACTTACCTGCT	NA	False	NA	NA	False	NA	NA	NA	94042614	94039249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_94039200_94042600
62405	SIRV1	-	1006	4	FSM	SIRV1A	SIRV102	1300	4	-1	295	-1	-295	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCCGGAGGAAGAGGAGA	NA	False	NA	NA	False	NA	NA	NA	10367	1301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
62407	chr3	-	3063	2	NIC	ENSMUSG00000027995.11	novel	3014	3	NA	NA	165	-1885	intron_retention	FALSE	canonical	3	25	junction_1	0	1	110	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCGAGTCTGCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	83748909	83745463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_83748444_83748826
62408	chr1	-	1405	10	NNC	ENSMUSG00000026603.14	novel	1680	12	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	144.268354203863	127	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	189654454	189612688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_189613064_189614305_189614415_189616020_189616199_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189642047_189642112_189654303
62410	chr5	-	1985	5	NNC	ENSMUSG00000085271.8	novel	906	5	NA	NA	13726	602	intron_retention	FALSE	canonical	0	0	junction_3	4.26468052730799	24	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCCATTTTTTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	111895840	111881547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_111883050_111886992_111887080_111887701_111887776_111893070_111893260_111895707
62411	ERCC-00009	-	968	1	Antisense	novelGene_ERCC-00009A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	968	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_ERCC-00009_-_0_1000
62412	chr15	-	545	5	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	7	-17	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	3461.92478073976	5	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATTGTCAAGTTTATTA	862	False	NA	NA	False	NA	NA	NA	11996091	11984143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11984384_11986541_11986651_11991099_11991168_11993874_11993948_11996036
62413	chr2	+	865	2	Genic_Genomic	ENSMUSG00000083097.4	novel	435	1	NA	NA	-109	450	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTTTCTCGTTTACTTAAAA	NA	False	NA	NA	False	NA	NA	NA	153667981	153668975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_153668116_153668244
62414	chr2	+	2783	9	ISM	ENSMUSG00000027425.19	ENSMUST00000028911.15	3801	11	45	4834	29	-1511	5prime_fragment	FALSE	canonical	3	306	junction_6	46.7145587584856	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGCCTATGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	144210947	144244762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_144211078_144215110_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314
62416	chr7	-	863	5	Antisense	novelGene_ENSMUSG00000078681.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1474	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCGGGCCAGGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	65351656	65343206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_65343317_65344889_65345076_65347443_65347618_65348838_65348913_65351337
62418	chr10	+	716	4	NNC	ENSMUSG00000060904.15	novel	2080	6	NA	NA	330	-725	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	540.750301792693	1	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATTAGTGGTTGCATC	NA	False	NA	NA	False	NA	NA	NA	88567259	88579231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88567427_88569404_88569450_88577790_88577948_88578884
62419	chr3	-	1145	6	NIC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-20	-5	intron_retention	FALSE	canonical	3	365	junction_2	23.7352059186349	58	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGAGCACACTGATCCTG	1218	False	NA	NA	False	NA	NA	NA	95041342	95037044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040940_95041155
62420	chr4	+	1864	6	ISM	ENSMUSG00000028280.10	ENSMUST00000029947.6	2286	10	19826	4	19826	-4	3prime_fragment	FALSE	canonical	3	14	junction_2	4.22374241638857	41	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGCATGATGTCATCACT	NA	False	NA	NA	False	NA	NA	NA	33152346	33163584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_33152637_33157059_33157143_33158036_33158178_33160116_33160270_33161629_33161827_33162584
62421	chr11	-	2421	3	Antisense	novelGene_ENSMUSG00000020453.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	75	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCTCCCTCTCTAGGTCT	NA	False	NA	NA	False	NA	NA	NA	3245284	3240356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_3241879_3243273_3243341_3244452
62422	chr7	-	1687	8	Fusion	ENSMUSG00000030956.16_ENSMUSG00000030960.17	novel	1107	6	NA	NA	45	-26	multi-exon	FALSE	canonical	3	26	junction_4	136.580693050979	2	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACATGTTTAGGAGTCAG	NA	False	NA	NA	False	NA	NA	NA	132454269	132361022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_132361897_132373306_132373359_132380864_132381115_132429431_132429612_132438828_132438937_132452323_132452439_132453154_132453221_132454227
62423	chrX	+	763	5	Antisense	novelGene_ENSMUSG00000031167.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	22	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAGACTTTCCTGCATG	NA	False	NA	NA	False	NA	NA	NA	8008601	8010136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_8008839_8008894_8009191_8009478_8009572_8009896_8009980_8010082
62424	chr16	-	1451	1	FSM	ENSMUSG00000116632.2	ENSMUST00000231504.2	1455	1	7	-3	7	3	mono-exon	FALSE	NA	NA	NA	NA	NA	76	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGTTGCACAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	21152099	21150648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21150600_21152100
62425	chr18	-	1146	1	Intergenic	novelGene_4532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGCATTGTAAGTACCTC	2392	False	NA	NA	False	NA	NA	NA	35738128	35736982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_35737000_35738100
62426	chr3	+	1685	10	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1177.53808881806	1	116	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCATCTCTGGATGTCCTT	NA	False	NA	NA	False	NA	NA	NA	79498667	79510952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498865_79500934_79501058_79502518_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507602_79507707_79509578_79509666_79509749_79509793_79510337
62427	chr4	-	835	2	Genic_Genomic	ENSMUSG00000046341.6	novel	450	1	NA	NA	-94	441	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAAATTATA	NA	False	NA	NA	False	NA	NA	NA	69844410	69843425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_69843706_69843855
62428	chr15	+	1613	1	NIC	ENSMUSG00000022307.17	novel	4515	16	NA	NA	7961	-2602	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCAAGTTATATACATACA	NA	False	NA	NA	False	NA	NA	NA	41660871	41662484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_41660900_41662500
62429	chr15	+	1079	1	Intergenic	novelGene_3210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCACGCCCGCCATCTT	NA	False	NA	NA	False	NA	NA	NA	8154477	8155556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_8154500_8155600
62430	chr2	-	2392	10	ISM	ENSMUSG00000036890.14	ENSMUST00000112810.8	2564	11	1294	37	1294	-34	3prime_fragment	FALSE	canonical	3	41	junction_7	7.69960717292018	2	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAATAAACTGCCCGCTG	NA	False	NA	NA	False	NA	NA	NA	44750340	44454460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44750302
62431	chr10	-	1306	7	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	371	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	170.013479857726	34	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAAAAGTCGGAGTGGT	NA	False	NA	NA	False	NA	NA	NA	62175950	62104891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105463_62131826_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
62432	chr3	+	1662	10	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_8	22.6949714341098	64	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACGTTGTGTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	104688374	104693329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692559_104692713_104692866_104693017
62435	chr2	-	943	1	NIC	ENSMUSG00000036850.5	novel	776	2	NA	NA	34	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	50	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAGTATGTGTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	24865076	24864133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_24864100_24865100
62437	chr17	-	641	7	NNC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-31	10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	163.702643703624	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGCTGGAGAGTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	46985244	46978958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46979013_46980830_46980949_46981036_46981070_46983261_46983367_46983450_46983518_46983631_46983774_46985122
62438	chr11	+	1816	16	NNC	ENSMUSG00000025142.19	novel	920	7	NA	NA	1	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	329.481586064465	1	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGAGTCGCGCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	120564218	120600249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580145_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
62441	chr2	+	1659	9	FSM	ENSMUSG00000035183.15	ENSMUST00000070353.4	1954	9	6	289	6	-289	multi-exon	TRUE	canonical	2	7	junction_6	24.0624188310319	85	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTAACACTTAATTACT	NA	False	NA	NA	False	NA	NA	NA	124910049	124930308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124927576_124927784_124929339_124929442_124929883
62442	chr3	+	1479	1	ISM	ENSMUSG00000046280.10	ENSMUST00000050401.6	5733	6	25962	24	19443	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	17	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTCAATAAATGCTTT	NA	False	NA	NA	False	NA	NA	NA	89764638	89766117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89764600_89766100
62443	chr5	+	1073	4	NNC	ENSMUSG00000047635.7	novel	1677	3	NA	NA	63	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	38.9044413345772	61	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCGAGGAAGCTGTGG	5461	False	NA	NA	False	NA	NA	NA	124466223	124479907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124466293_124476689_124476999_124478671_124479311_124479851
62444	chr2	+	2204	7	FSM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	234	11	17	-11	multi-exon	FALSE	canonical	3	62	junction_6	11.4370256428652	66	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTTTGGTGTGGCCG	NA	False	NA	NA	False	NA	NA	NA	180231271	180237618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
62445	chr5	-	1408	9	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	10	-11	combination_of_known_junctions	FALSE	canonical	3	12	junction_8	72.9845874140561	131	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCCTCACCGGCC	NA	False	NA	NA	False	NA	NA	NA	110255272	110251855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255210
62446	chrX	-	421	1	ISM	ENSMUSG00000047242.15	ENSMUST00000055497.15	2633	7	12566	32	12566	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTCAACATTGTTAATAA	NA	False	NA	NA	False	NA	NA	NA	105250941	105250520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_105250500_105250900
62447	chr13	+	1116	9	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	98	junction_8	99.0959131347	112	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGGTTTATGTTCAC	NA	False	NA	NA	False	NA	NA	NA	54937276	54944586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
62448	chr4	+	1432	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	11089	738	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	262.803255345911	1	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGGAAAATGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	89066447	89098449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89066513_89070245_89070305_89074682_89074851_89089364_89089472_89090405_89090497_89090547_89090622_89095039_89095163_89097704
62449	chr8	-	966	2	Intergenic	novelGene_1763	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTAGTGGTGAGCATCTA	NA	False	NA	NA	False	NA	NA	NA	117643166	117642151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_117642541_117642589
62450	chr6	-	1672	7	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-5	-266	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.385579403125	1	106	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGGGAGAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	120893819	120870080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120870422_120870677_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
62451	chr15	-	528	2	FSM	ENSMUSG00000050891.11	ENSMUST00000226141.2	2089	2	-25	1586	0	-1586	multi-exon	FALSE	canonical	3	108	junction_1	0	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTAGTTCCCTGAACCTG	NA	False	NA	NA	False	NA	NA	NA	58805587	58800130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_58800599_58805527
62452	chr15	-	414	1	ISM	ENSMUSG00000050891.11	ENSMUST00000226141.2	2089	2	6591	13	6246	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAATTATTAACTATTCAG	NA	False	NA	NA	False	NA	NA	NA	58798971	58798557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_58798600_58799000
62453	chr10	-	1201	4	FSM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	9	559	9	-2	multi-exon	FALSE	canonical	3	105	junction_3	8.33999733546454	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAGCCGGTGAATGAC	NA	False	NA	NA	False	NA	NA	NA	61946820	61943992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946737
62454	chr14	+	2050	3	ISM	ENSMUSG00000061356.14	ENSMUST00000079469.7	2567	19	29755	6716	29755	-6716	intron_retention	FALSE	canonical	3	31	junction_1	1	3	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGTACATGTGCGTTT	NA	False	NA	NA	False	NA	NA	NA	65872470	65879177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_65872617_65875999_65876158_65877431
62455	chr8	+	1243	6	NNC	ENSMUSG00000003812.14	novel	1715	6	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	42.0789733715071	15	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACTAGTTTTGACTTGAA	NA	False	NA	NA	False	NA	NA	NA	85635386	85638091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635571_85635792_85635885_85635965_85636400_85636599_85637314_85637821_85637964
62456	chr4	+	849	2	Genic_Genomic	ENSMUSG00000037028.8	novel	1455	3	NA	NA	-1960	-1509	multi-exon	FALSE	canonical	2	2	junction_1	0	10	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCAGGGACCACATGAAA	NA	False	NA	NA	False	NA	NA	NA	101764357	101767596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_101764446_101766835
62457	chr5	+	537	4	Antisense	novelGene_ENSMUSG00000004415.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	4.02768199119819	2	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTGAGACTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	136766569	136777368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_136766691_136773793_136773974_136774222_136774384_136777293
62459	chr9	+	1294	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	-14	8	-14	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	94	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	NA	False	NA	NA	NA	20914019	20920127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
62460	chr1	-	2290	1	Genic_Genomic	ENSMUSG00000026035.16	novel	NA	NA	NA	NA	-2117	-993	mono-exon	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGGCATAACCCTATG	NA	False	NA	25	True	NA	NA	NA	58473461	58471171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_58471200_58473500
62461	chr15	-	2049	10	FSM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	44	17	41	-9	multi-exon	FALSE	canonical	0	0	junction_5	67.0043300609265	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGCTTCATTCTGTATTC	NA	False	NA	NA	False	NA	NA	NA	39720822	39646109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_39646506_39647964_39648111_39656622_39656831_39687561_39687705_39690259_39690402_39691370_39691528_39705318_39705509_39707253_39707434_39710004_39710164_39720494
62462	chr15	-	1733	6	NIC	ENSMUSG00000033220.8	novel	3038	7	NA	NA	11	1016	intron_retention	FALSE	canonical	3	13	junction_2	6.04648658313239	77	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAGAAAATAAATGTGTTG	NA	False	NA	NA	False	NA	NA	NA	78456970	78445078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
62463	chr14	-	1644	4	FSM	ENSMUSG00000072676.13	ENSMUST00000100811.6	1108	4	-381	-155	12	155	multi-exon	FALSE	canonical	3	8	junction_3	63.5627424063989	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTCCACATAACATCAGT	NA	False	NA	NA	False	NA	NA	NA	25928055	25924438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927468
62465	chr14	-	1111	1	Intergenic	novelGene_533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCCAAACCTACTATTTA	NA	False	NA	NA	False	NA	NA	NA	27179474	27178363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_27178400_27179500
62466	chr13	+	2253	6	Intergenic	novelGene_1499	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTCGCCTGCAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	89859375	89890448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_89860617_89869684_89869814_89869890_89870064_89873405_89873783_89879577_89879653_89890190
62467	chr11	+	1822	2	FSM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	239	0	239	0	multi-exon	FALSE	canonical	3	29	junction_1	0	47	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCTGGCCTTTCCTT	109	False	NA	NA	False	NA	NA	NA	70655273	70663754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70655376_70662034
62468	chr2	-	1989	13	ISM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	370	5	351	4	3prime_fragment	FALSE	canonical	2	10	junction_12	3.05845821725043	50	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGATCTCAGTGTGCCC	NA	False	NA	NA	False	NA	NA	NA	91466389	91455669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466122
62469	chr2	+	553	4	ISM	ENSMUSG00000039108.15	ENSMUST00000058764.6	2566	9	4969	2814	3458	-1159	internal_fragment	FALSE	canonical	3	53	junction_3	3.74165738677394	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGGCCTGGGTGCACAT	NA	False	NA	NA	False	NA	NA	NA	179673159	179674444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179673322_179673586_179673665_179673853_179674016_179674293
62470	chr2	+	1228	2	ISM	ENSMUSG00000039108.15	ENSMUST00000058764.6	2566	9	7411	2	5900	-2	3prime_fragment	FALSE	canonical	3	77	junction_1	0	76	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCTGTCCGTCACCT	NA	False	NA	NA	False	NA	NA	NA	179675601	179677256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179675664_179676090
62471	chr15	+	1470	2	FSM	ENSMUSG00000023032.13	ENSMUST00000162805.2	641	2	-122	-707	-122	707	multi-exon	FALSE	canonical	3	36	junction_1	0	2	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATGGAAAAAGACTGGAT	4694	False	NA	NA	False	NA	NA	NA	100700506	100704877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_100701230_100704130
62473	chr11	-	1524	8	FSM	ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	48	260	48	35	multi-exon	TRUE	canonical	3	25	junction_1	3.91751691451488	132	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGCTTCTTCCTTCTCC	5426	False	NA	NA	False	NA	NA	NA	75313479	75300854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055_75307255_75308734_75308823_75313321
62474	chr5	-	562	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	-55	-66	-55	66	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGACTTG	NA	False	NA	NA	False	NA	NA	NA	129205636	129205074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129205100_129205600
62475	chr11	-	2931	2	NNC	ENSMUSG00000037601.12	novel	493	4	NA	NA	817	-1510	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGTCTGCATGCAGGCA	3680	False	NA	NA	False	NA	NA	NA	93856052	93853003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_93854162_93854279
62477	chr19	-	1244	8	NNC	ENSMUSG00000025196.5	novel	1828	9	NA	NA	-7115	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	14.059639731791	38	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	4436	False	NA	NA	False	NA	NA	NA	43964247	43944745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43964143
62478	chr1	+	2753	17	NNC	ENSMUSG00000026175.13	novel	744	7	NA	NA	-39	-44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.92617497767991	14	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAGGCTTTAATGTCT	NA	False	NA	NA	False	NA	NA	NA	74458172	74474674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_74458265_74458727_74458837_74458953_74459065_74460411_74460615_74460719_74460799_74460937_74461037_74462085_74462240_74462833_74462935_74463021_74463160_74464695_74464855_74465710_74465891_74466398_74466545_74466637_74466783_74467225_74467415_74469775_74469845_74471449_74471591_74474036
62479	chr3	-	1988	14	ISM	ENSMUSG00000005493.16	ENSMUST00000188338.7	2802	20	17865	-116	-6623	-4	3prime_fragment	FALSE	canonical	0	0	junction_2	1.59881613006358	7	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTTCTTTTAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	153592503	153562789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_153563272_153566524_153566614_153568975_153569151_153571957_153572087_153573360_153573480_153575200_153575402_153577902_153578028_153579262_153579367_153580293_153580431_153582264_153582435_153583545_153583611_153584995_153585071_153589367_153589436_153592454
62480	chr3	+	2222	9	ISM	ENSMUSG00000041237.13	ENSMUST00000107482.10	2902	11	4746	428	4695	-238	3prime_fragment	TRUE	canonical	0	0	junction_1	1.08972473588517	4	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTTAGGTGCAATTATAA	5365	False	NA	NA	False	NA	NA	NA	89048624	89053663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89048714_89048812_89048945_89049069_89049257_89049512_89049784_89049898_89050050_89050268_89050422_89050516_89050684_89052132_89052315_89052773
62481	chr3	-	1089	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	46	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	72.7268863626101	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	95789340	95785812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788592_95789266
62482	chr8	-	745	5	NNC	ENSMUSG00000093904.3	novel	4902	5	NA	NA	0	197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2762.9463892736	19	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATCATGGATTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	127672594	127661538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_127661810_127663789_127663894_127666621_127666704_127667928_127667976_127672353
62484	chr6	-	642	2	Genic_Genomic	ENSMUSG00000082691.7	novel	342	1	NA	NA	-40	333	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAGAAAGACAGGAAGG	NA	False	NA	NA	False	NA	NA	NA	135326787	135326072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_135326158_135326230
62485	chr2	+	854	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	64	235	13	2	multi-exon	FALSE	canonical	3	201	junction_1	312.789954371229	872	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3449	False	NA	NA	False	NA	NA	NA	180829152	180830299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
62487	chr19	+	2177	1	NIC	ENSMUSG00000032648.15	novel	2874	20	NA	NA	1752	-5841	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAATGTGCGTTGCCCTTC	NA	False	NA	NA	False	NA	NA	NA	6436196	6438373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6436200_6438400
62488	chr3	+	948	6	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	5	51	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	42.804672642131	32	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGTATAGCCAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	135053811	135080237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135053884_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
62490	chr7	-	1490	12	NIC	ENSMUSG00000030720.17	novel	1571	14	NA	NA	245	-2	intron_retention	FALSE	canonical	3	16	junction_10	43.3942144904095	1	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTGTGCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	126182041	126171259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935
62491	chr1	+	1442	10	NNC	ENSMUSG00000026617.17	novel	1226	10	NA	NA	10	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	86.6005445767384	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAAGCTGGGTAATTGC	NA	False	NA	NA	False	NA	NA	NA	185064413	185089962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674_185088960_185089637
62492	chr4	-	735	6	NIC	ENSMUSG00000028964.15	novel	908	7	NA	NA	7	4	intron_retention	FALSE	canonical	3	51	junction_3	2289.39637459309	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTACCTTTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	150994278	150981597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_150981929_150985464_150985552_150988271_150988342_150991496_150991599_150992774_150992881_150994239
62493	chr13	-	2405	10	Intergenic	novelGene_1332	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAGTCTGGGAACCCACG	NA	False	NA	NA	False	NA	NA	NA	25390261	25240038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_25240547_25245217_25245271_25286313_25286393_25286501_25286634_25291571_25291719_25294047_25294105_25303229_25303388_25371656_25371758_25386145_25386449_25389394
62494	chr2	-	2344	11	NNC	ENSMUSG00000026918.17	novel	5419	12	NA	NA	-71	-542	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	82.6278403445231	2	112	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATGGTGTGCAGGTTTT	NA	False	NA	NA	False	NA	NA	NA	27354199	27338396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349835_27351540_27351756_27352432_27352581_27353466_27353605_27353900
62495	chr9	+	2102	1	Intergenic	novelGene_1138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGTGGCACACACCTTTA	NA	False	NA	NA	False	NA	NA	NA	96989530	96991632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_96989500_96991600
62497	chr2	-	890	6	Antisense	novelGene_ENSMUSG00000027203.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCGTGCGAGAGCCTA	1238	False	NA	NA	False	NA	NA	NA	125099652	125089639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_125089809_125091078_125091175_125092889_125092936_125098766_125098901_125098991_125099058_125099273
62501	chr6	-	1596	8	NNC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	193.124576480613	1	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATACCTAGCAACATGTT	2025	False	NA	NA	False	NA	NA	NA	83031424	83028276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029810_83030014_83030052_83030309_83030505_83030593_83030799_83030901
62502	chr5	-	1953	8	ISM	ENSMUSG00000029309.8	ENSMUST00000031249.8	2759	11	5	7947	5	5782	5prime_fragment	FALSE	canonical	1	1	junction_2	1.04978131833565	6	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGCGGCTATCTCAATGA	NA	False	NA	NA	False	NA	NA	NA	104261594	104234923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_104235025_104236262_104236384_104237465_104237585_104238257_104238328_104240243_104241240_104242504_104242634_104245574_104245640_104261242
62503	chr7	-	1258	2	FSM	ENSMUSG00000073982.12	ENSMUST00000098230.11	1269	2	11	0	11	0	multi-exon	FALSE	canonical	3	11	junction_1	0	177	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCTCCCTATGTG	6371	False	NA	NA	False	NA	NA	NA	101899319	101888329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_101889520_101899251
62504	chr9	+	2225	14	FSM	ENSMUSG00000013584.6	ENSMUST00000034723.6	2264	14	29	10	29	-10	multi-exon	FALSE	canonical	2	4	junction_1	2.4973358585766	16	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACACCTTGGGACTGTTTG	NA	False	NA	NA	False	NA	NA	NA	71123099	71203515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_71123246_71159879_71159985_71160197_71160339_71162315_71162446_71169012_71169075_71171068_71171198_71171314_71171429_71188885_71188989_71190659_71190845_71192135_71192301_71192397_71192556_71193201_71193277_71200887_71200977_71202892
62505	chr1	+	2614	15	NNC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	-3	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	52.954736158654	2	146	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCCAAGTTTCTGACTG	NA	False	NA	NA	False	NA	NA	NA	151304414	151333903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151319001_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
62506	chr5	+	1180	1	Antisense	novelGene_ENSMUSG00000029202.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTCCTTCTGTGACTT	1014	False	NA	NA	False	NA	NA	NA	65765129	65766309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_65765100_65766300
62507	chr7	+	2429	10	Antisense	novelGene_ENSMUSG00000038930.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	17	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGCCAAACAGGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	79966111	79974188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_79966289_79966439_79966795_79967196_79967230_79968605_79968775_79968993_79969090_79969839_79969961_79970048_79970449_79970609_79970932_79971027_79971094_79973498
62508	chr7	+	1147	4	NNC	ENSMUSG00000038646.14	novel	1452	3	NA	NA	56	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	339.467229640801	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	False	NA	NA	False	NA	NA	NA	81412728	81419239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81412805_81417274_81417472_81418116_81418380_81418628
62509	chr5	-	1768	10	NNC	ENSMUSG00000028959.15	novel	1893	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	386.166566760965	3	71	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTAAGTCTTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	24650184	24646038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24646260_24646333_24646449_24646525_24646640_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
62510	chr2	-	1791	7	ISM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	535	-10	259	10	3prime_fragment	FALSE	canonical	3	78	junction_3	14.4270194041905	240	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTTCTCTCACTAGCC	NA	False	NA	NA	False	NA	NA	NA	84605213	84595720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083
62511	chr11	-	2496	2	Antisense	novelGene_ENSMUSG00000042650.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTATTAATCCAATATGCA	NA	False	NA	NA	False	NA	NA	NA	60448781	60446241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_60448678_60448721
62513	chr13	-	1741	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	20	-152	20	152	multi-exon	FALSE	canonical	3	68	junction_1	0	262	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAATTAAAAGGAGCGTC	NA	False	NA	NA	False	NA	NA	NA	104314927	104310077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_104311513_104314621
62514	chr7	-	740	5	NNC	ENSMUSG00000030869.12	novel	552	5	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_1	2197.68361007676	324	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6398	False	NA	NA	False	NA	NA	NA	121701069	121690053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_121690291_121690808_121690909_121692839_121692928_121695831_121695955_121700877
62516	chr17	-	1038	7	NNC	ENSMUSG00000015120.16	novel	1138	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2322.88202216318	1	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGTTGCATTATCAT	4521	False	NA	NA	False	NA	NA	NA	25492583	25480889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25481466_25483739_25483820_25484092_25484146_25487531_25487588_25488165_25488250_25488376_25488444_25492461
62517	chr5	-	254	1	Intergenic	novelGene_714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGCCGTGTTAATCTAGGT	9413	False	NA	NA	False	NA	NA	NA	53698148	53697894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_53697900_53698100
62519	chr15	-	1075	7	NNC	ENSMUSG00000016637.8	novel	375	5	NA	NA	24	1200	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	120.423788716719	14	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTGGTTGAGTGCTCC	NA	False	NA	NA	False	NA	NA	NA	78058283	78046811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_78047144_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
62520	chr15	+	1405	7	FSM	ENSMUSG00000023043.8	ENSMUST00000023803.8	1437	7	3	29	3	-29	multi-exon	FALSE	canonical	3	28	junction_3	6.13731754650732	127	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAGTTGAGAGCTCAC	NA	False	NA	NA	False	NA	NA	NA	101936617	101940433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101937110_101937900_101937984_101938257_101938415_101939053_101939219_101939329_101939456_101939730_101939955_101940275
62521	chr8	+	1888	6	NIC	ENSMUSG00000031562.17	novel	1126	5	NA	NA	175	-46	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	132.43775896624	1	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTGCCAGTATTGTTA	NA	False	NA	NA	False	NA	NA	NA	48563420	48594652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
62522	chr4	+	695	5	NIC	ENSMUSG00000028837.9	novel	859	6	NA	NA	-12	-4	combination_of_known_splicesites	FALSE	canonical	3	136	junction_1	1450.30695026949	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATCTTTCTGGGTTTGGC	5417	False	NA	NA	False	NA	NA	NA	126571459	126603503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126571639_126580821_126580893_126599850_126600014_126601346_126601397_126603271
62523	SIRV3	+	764	7	NNC	SIRV3A	novel	1083	8	NA	NA	23	-134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1046.37523809047	1	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCGTTGACGTATTTATG	NA	False	NA	NA	False	NA	NA	NA	4026	8803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_4081_4594_4780_6057_6334_7270_7367_7872_7944_8173_8208_8755
62524	chr7	+	1025	6	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	-424	132	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	180.679163159452	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGCACCCCGATTTAC	NA	False	NA	NA	False	NA	NA	NA	100145978	100148641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100146156_100146301_100146513_100147284_100147480_100147554_100147594_100147919_100148124_100148442
62525	chr17	-	1236	5	NNC	ENSMUSG00000004945.16	novel	948	4	NA	NA	8	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	346.696553198903	1764	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGAAGTCAGCGGGGGC	3476	False	NA	NA	False	NA	NA	NA	5490510	5461155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_5461743_5463622_5463930_5483716_5483855_5489806_5489908_5490407
62526	chr8	-	1651	8	NIC	ENSMUSG00000034416.19	novel	7389	43	NA	NA	7051	194	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	8.66614336463034	1	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATGGAAAAGAACA	4474	False	NA	NA	False	NA	NA	NA	117743783	117722223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_117722580_117724274_117724407_117724814_117724917_117726511_117726723_117736308_117736470_117740602_117740737_117741601_117741930_117743556
62527	chr7	-	3784	22	NIC	ENSMUSG00000037606.19	novel	3775	22	NA	NA	-45	-14	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	1.88441513689613	6	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATACATGTATTTCTC	NA	False	NA	NA	False	NA	NA	NA	143310767	143242512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143243695_143245624_143245728_143246594_143246722_143247508_143247636_143247934_143248121_143248545_143248683_143248776_143248867_143249251_143249350_143252970_143253070_143254450_143254548_143254928_143255028_143256426_143256509_143256887_143257073_143258246_143258440_143258705_143258878_143261082_143261168_143262744_143262949_143263275_143263378_143263509_143263591_143267232_143267316_143269402_143269560_143310672
62530	chr17	-	1026	10	NNC	ENSMUSG00000004865.17	novel	4804	15	NA	NA	-7	80	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	308.896882390576	1	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAGAAACTTGGTATAAA	NA	False	NA	NA	False	NA	NA	NA	28841013	28819229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28831932_28831992_28840950
62532	chr17	+	2214	7	ISM	ENSMUSG00000064147.8	ENSMUST00000233860.2	4105	8	2976	531	1694	202	3prime_fragment	TRUE	canonical	1	2	junction_6	1.77169096878911	9	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTCCCCAAGTCTTTCA	8982	False	NA	NA	False	NA	NA	NA	29357005	29367419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29357147_29358088_29359525_29363462_29363545_29364220_29364336_29364914_29365017_29366321_29366399_29367158
62533	chr10	+	1780	5	NNC	ENSMUSG00000035504.17	novel	2127	5	NA	NA	86	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	233.993990307444	2	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7362	False	NA	NA	False	NA	NA	NA	80166121	80172275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80166180_80169336_80169443_80169546_80169662_80169799_80169969_80170943
62534	chr11	-	1271	1	FSM	ENSMUSG00000043439.6	ENSMUST00000052281.6	2314	1	1044	-1	1044	1	mono-exon	FALSE	NA	NA	NA	NA	NA	497	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTTTCGAGGTCCTTGCC	5985	False	NA	NA	False	NA	NA	NA	97519484	97518213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97518200_97519500
62535	chr17	-	846	7	NNC	ENSMUSG00000024387.14	novel	961	7	NA	NA	54	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	341.237331877195	20	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAAGGCCATGAGCTGTC	NA	False	NA	NA	False	NA	NA	NA	35340208	35335184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35335402_35336671_35336812_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
62536	chr2	+	2408	1	Intergenic	novelGene_2628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3459	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTGGACCCCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	53103179	53105587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_53103200_53105600
62537	chr7	+	671	2	Antisense	novelGene_ENSMUSG00000086583.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGCGAGAACTTCTTG	6921	False	NA	NA	False	NA	NA	NA	114304458	114305469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_114304596_114304935
62538	chr6	+	2828	14	FSM	ENSMUSG00000000693.11	ENSMUST00000000707.9	4098	14	32	1238	32	657	multi-exon	FALSE	canonical	2	3	junction_1	2.5903781908435	13	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGGACTGATGCAGCGG	2261	False	NA	NA	False	NA	NA	NA	83011185	83028305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83011271_83012435_83012779_83014409_83014574_83015375_83015591_83024968_83025189_83025558_83025740_83025849_83026005_83026164_83026333_83026464_83026628_83026754_83026999_83027096_83027213_83027288_83027426_83027538_83027651_83027780
62540	chr7	+	2081	4	NNC	ENSMUSG00000095922.2	novel	1140	3	NA	NA	-2424	849	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	47	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTTCTGTCATCTGTAT	NA	False	NA	NA	False	NA	NA	NA	14972772	14977762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_14972820_14975151_14975414_14975539_14975740_14976190
62541	chr17	-	1353	7	NIC	ENSMUSG00000023919.10	novel	728	2	NA	NA	473	-14	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	58.0631839751605	17	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAGGAGCTGACACGCCA	NA	False	NA	NA	False	NA	NA	NA	41245465	41236713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_41237362_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
62543	chr10	-	2182	14	NNC	ENSMUSG00000020329.13	novel	3755	21	NA	NA	-1285	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	57.343251745171	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTACCTATGCCAGCCGCC	NA	False	NA	NA	False	NA	NA	NA	79576494	79572013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79572118_79572200_79572278_79572356_79572449_79572565_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573730_79573911_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412
62544	chr4	-	1669	9	ISM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	4634	10013	4634	25	internal_fragment	FALSE	canonical	3	81	junction_8	14.1636638974525	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACCCACACGCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	140496913	140483188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621
62545	chr11	-	1190	3	ISM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	10229	2343	9943	634	3prime_fragment	FALSE	canonical	3	429	junction_1	16	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCCAGTGTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	23605730	23598821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_23599591_23600929_23601056_23605435
62546	chr14	-	1354	11	Antisense	novelGene_ENSMUSG00000021981.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGCCGAGAACCCGATTG	NA	False	NA	NA	False	NA	NA	NA	59784803	59678420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_59678467_59696541_59696690_59699082_59699150_59734249_59734391_59736989_59737156_59743711_59743832_59757013_59757182_59764202_59764263_59766285_59766349_59776497_59776663_59784593
62548	chr13	+	1208	3	NIC	ENSMUSG00000021486.8	novel	2644	5	NA	NA	17	-692	intron_retention	FALSE	canonical	3	1299	junction_1	8.5	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAATACATCCTGGCCAA	5570	False	NA	NA	False	NA	NA	NA	55469848	55472390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_55470892_55472143_55472258_55472339
62549	chr2	+	1138	3	FSM	ENSMUSG00000026810.13	ENSMUST00000128039.2	655	3	7	-490	7	-8	multi-exon	FALSE	canonical	3	393	junction_2	5	1365	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTCTCTGCCATCC	4789	False	NA	NA	False	NA	NA	NA	32460885	32463583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32461308_32462308_32462412_32462970
62550	chr9	-	2827	19	FSM	ENSMUSG00000043943.15	ENSMUST00000166825.8	2799	19	-28	0	-28	0	multi-exon	FALSE	canonical	0	0	junction_2	1.64147630029935	11	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTTAGCATCAAGAAACA	2030	False	NA	NA	False	NA	NA	NA	18297360	18234315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_18234920_18237471_18237565_18238659_18238742_18241930_18242196_18246223_18246315_18250686_18250779_18258749_18258818_18260145_18260210_18262145_18262229_18262331_18262452_18262705_18262792_18274437_18274537_18275416_18275511_18287718_18287906_18289903_18290030_18291207_18291310_18292090_18292278_18296340_18296453_18297088
62551	chr11	-	1259	1	Genic_Genomic	ENSMUSG00000044056.4	novel	NA	NA	NA	NA	-1020	-8503	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGGGGGCGTAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	32483101	32481842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_32481800_32483100
62553	chr17	+	624	4	ISM	ENSMUSG00000002763.17	ENSMUST00000002840.9	3200	17	12924	69	4176	-69	3prime_fragment	FALSE	canonical	3	86	junction_2	9.20144916122817	27	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCAGCCTGTGACCTGT	NA	False	NA	NA	False	NA	NA	NA	47035312	47036398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_47035434_47035552_47035631_47035750_47035891_47036113
62554	chr19	+	801	5	FSM	ENSMUSG00000060675.14	ENSMUST00000025925.11	3523	5	-34	2756	-34	-922	multi-exon	TRUE	canonical	3	141	junction_1	31.8825971338597	1139	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTGAGGATACTGCAG	NA	False	NA	NA	False	NA	NA	NA	7534789	7563154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_7534930_7535296_7535361_7552301_7552405_7556318_7556588_7562929
62555	chr8	+	2012	2	Antisense	novelGene_ENSMUSG00000031974.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	15	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACATGATTTTGGCAAAAC	NA	False	NA	NA	False	NA	NA	NA	124705534	124708881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_124705815_124707149
62556	chr12	-	1579	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	-287	7	-210	-7	multi-exon	FALSE	canonical	0	0	junction_1	973.5	2	89	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTTTAAAATTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	105189262	105183023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_105183961_105184917_105185089_105188791
62557	chr17	-	2777	4	NNC	ENSMUSG00000097624.3	novel	1218	5	NA	NA	36	-4707	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.0362033908947	4	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTCTTTAAAGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	15461009	15456553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15456884_15457287_15459596_15460531_15460624_15460962
62559	chr6	-	877	4	NIC	ENSMUSG00000030189.16	novel	1853	10	NA	NA	2213	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1493.43385078371	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTGTAACTAGTGTGTA	592	False	NA	NA	False	NA	NA	NA	131352991	131341817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_131342369_131344727_131344827_131345351_131345524_131352936
62560	chr4	-	2625	1	NIC	ENSMUSG00000062627.10	novel	7420	20	NA	NA	-3830	576	mono-exon	FALSE	NA	NA	NA	NA	NA	21	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACTCTTTTATAGTATA	NA	False	NA	NA	False	NA	NA	NA	94862718	94860093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_94860100_94862700
62562	chr7	-	642	6	NNC	ENSMUSG00000030751.19	novel	959	5	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1139.62618432537	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTATTGTGTCAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	113875355	113863846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_113864060_113870319_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
62563	chr1	+	2056	1	Antisense	novelGene_ENSMUSG00000055067.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCTCAGAGAGAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	179221519	179223575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_179221500_179223600
62564	chr3	+	515	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	-21	-50	-21	50	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24387210	24387725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_24387200_24387700
62567	chr7	+	1627	16	Antisense	novelGene_ENSMUSG00000098540.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	37	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCCTTCCATCACGTGC	NA	False	NA	NA	False	NA	NA	NA	126171257	126182538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126171557_126171640_126171786_126174167_126174258_126174372_126174431_126174515_126174584_126174660_126174707_126176978_126177094_126178344_126178489_126178572_126178645_126179314_126179401_126179502_126179584_126179963_126180039_126180805_126180919_126181938_126182014_126182170_126182259_126182466
62568	chr10	+	1828	1	NIC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	514	-255	mono-exon	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTCACCAAGATGTGGC	NA	False	NA	NA	False	NA	NA	NA	79518873	79520701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79518900_79520700
62570	chr17	+	874	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	-7	6	1	-4	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	1484	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAATTCCTGGTTTGTCG	236	False	NA	NA	False	NA	NA	NA	35201097	35204861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
62571	chr6	+	1201	9	Antisense	novelGene_ENSMUSG00000108122.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	9	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGGGCCAGAAGAGCAGTTA	NA	False	NA	NA	False	NA	NA	NA	100579274	100642306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_100579576_100588697_100588824_100607847_100607970_100609201_100609252_100613926_100614084_100625124_100625253_100632219_100632329_100641382_100641555_100642270
62573	chr12	+	1789	11	ISM	ENSMUSG00000021144.15	ENSMUST00000109727.9	2789	20	29861	0	-3193	0	3prime_fragment	FALSE	canonical	3	436	junction_1	44.4796582720686	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAAGCCCTTCTGCGTCTT	NA	False	NA	NA	False	NA	NA	NA	113091758	113100825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
62574	chr1	+	2162	13	NIC	ENSMUSG00000038305.16	novel	3929	14	NA	NA	75	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	19.1485421551268	4	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGCTTGCTCTTTCTA	NA	False	NA	NA	False	NA	NA	NA	57814150	57986124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_57814184_57838463_57838514_57871211_57871297_57894622_57894684_57918666_57918776_57921864_57921915_57924861_57925109_57941247_57941384_57962524_57962584_57977070_57977181_57979531_57979635_57982179_57982401_57985226
62575	chr5	-	1533	1	Intergenic	novelGene_682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCCCATCAATTTACTAC	NA	False	NA	NA	False	NA	NA	NA	31335669	31334136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_31334100_31335700
62578	chr10	-	1537	8	FSM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	99	2002	99	311	multi-exon	FALSE	canonical	3	242	junction_7	11.6303613925986	47	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAATTGAACAATAAATAT	4975	False	NA	NA	False	NA	NA	NA	62066931	62023176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62066798
62579	chr7	-	969	4	NNC	ENSMUSG00000030741.16	novel	2017	11	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_1	212.157174440712	29	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	125976595	125969238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125969418_125974238_125974376_125975845_125975912_125976008
62580	chr14	-	1996	10	FSM	ENSMUSG00000021902.8	ENSMUST00000226565.2	1971	10	-33	8	-31	-1	multi-exon	FALSE	canonical	3	15	junction_2	5.27280467453541	62	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCGGGTCTCCTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	30973305	30959653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
62581	chr2	-	1536	13	NNC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	-36	126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	134.720595637374	1	88	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTGATACTCTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	48830413	48795201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807346_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344
62582	chr13	-	1902	4	Antisense	novelGene_ENSMUSG00000021548.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGACCGCGGACGCGTG	NA	False	NA	NA	False	NA	NA	NA	85346964	85337557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_85337769_85338869_85338995_85344369_85344447_85345475
62586	chr4	-	1125	1	Intergenic	novelGene_1897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTTCTCAGGAGACA	NA	False	NA	NA	False	NA	NA	NA	83169501	83168376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_83168400_83169500
62588	chr11	-	1611	7	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	1893	1	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	103.52254182866	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCGGTGGTCTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	77783029	77771439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77772180_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937
62591	chr19	-	2145	14	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	17673	227	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	21.4409882312211	8	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACCAAGAGAGTCCAGT	NA	False	NA	NA	False	NA	NA	NA	42402549	42271743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043_42307201_42312150_42312288_42322314_42322512_42402375
62592	chr7	-	873	6	NNC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	171.429752376885	319	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1580	False	NA	NA	False	NA	NA	NA	139682245	139679382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681922
62593	chr5	-	1764	1	Intergenic	novelGene_759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTTGTTTTGTTTTTGT	1669	False	NA	NA	False	NA	NA	NA	103884400	103882636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_103882600_103884400
62594	chr19	+	432	1	ISM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	3145	1170	3035	2	mono-exon	FALSE	NA	NA	NA	NA	NA	459	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5543627	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5543600_5544100
62595	chr17	+	779	5	NNC	ENSMUSG00000015575.16	novel	823	4	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	607.644838701029	53	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	26895433	26918621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26895553_26898874_26898937_26901651_26901700_26914328_26914443_26918185
62596	chr7	+	1889	1	Antisense	novelGene_ENSMUSG00000052296.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	4639214	4641103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_4639200_4641100
62600	chr8	-	2443	16	Antisense	novelGene_ENSMUSG00000085678.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	8	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCAGCGGGCCCGCGGGC	NA	False	NA	NA	False	NA	NA	NA	110661371	110595290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_110595348_110603432_110603723_110622144_110622273_110630870_110631061_110634124_110634251_110635662_110635820_110638319_110638467_110638836_110639066_110640198_110640403_110646710_110646774_110649447_110649542_110652379_110652538_110655086_110655281_110659757_110659921_110660585_110660720_110661262
62601	chr10	+	1143	1	Intergenic	novelGene_3534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	117176325	117177468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_117176300_117177500
62602	chr14	-	3776	1	NIC	ENSMUSG00000037722.9	novel	2788	6	NA	NA	-2	-428	mono-exon	FALSE	NA	NA	NA	NA	NA	6	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACAGGATAAAGCATCTT	NA	False	NA	NA	False	NA	NA	NA	45626242	45622466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_45622500_45626200
62603	chr15	+	599	5	FSM	ENSMUSG00000001289.13	ENSMUST00000001335.7	570	5	-25	-4	-4	4	multi-exon	FALSE	canonical	3	11	junction_2	370.883741892254	172	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTGGTCTATTCTTGCA	382	False	NA	NA	False	NA	NA	NA	102234598	102239925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102234696_102234867_102234971_102236956_102237032_102237146_102237253_102239707
62604	chr14	+	344	3	NNC	ENSMUSG00000025290.18	novel	2769	4	NA	NA	823	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6593.5	25	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCTACACGTCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	24542039	24545917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_24542185_24543450_24543567_24545834
62605	chr13	+	2153	12	NNC	ENSMUSG00000021671.10	novel	5183	13	NA	NA	30	-2317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	51.3120416650391	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGCCTGCCAGTGATT	NA	False	NA	NA	False	NA	NA	NA	96524831	96551377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_96525040_96526730_96526820_96529728_96529853_96530999_96531078_96533147_96533339_96535201_96535380_96537257_96537363_96538083_96538264_96539387_96539542_96540913_96541192_96547097_96547275_96550986
62606	chr6	-	1620	3	Intergenic	novelGene_4169	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_2	1.5	61	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTTTTTTATATGTAT	NA	False	NA	NA	False	NA	NA	NA	52423116	52405899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_52407226_52411545_52411647_52422923
62607	chr12	-	932	5	NNC	ENSMUSG00000020547.6	novel	729	6	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	442.255228911994	122	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGTATATGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	36206765	36141839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36142327_36173933_36174038_36179990_36180168_36184889_36184955_36206666
62608	chr2	+	2448	2	NNC	ENSMUSG00000027035.11	novel	7038	10	NA	NA	151815	-5	at_least_one_novel_splicesite	TRUE	canonical	3	53	junction_1	0	31	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACAGCATGAGTGTCCT	235	False	NA	NA	False	NA	NA	NA	68942069	68944621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_68943469_68943572
62610	chr7	-	1266	1	Intergenic	novelGene_2868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAAACCCTAGGCCTCA	1535	False	NA	NA	False	NA	NA	NA	3577599	3576333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_3576300_3577600
62611	chr12	+	1417	4	ISM	ENSMUSG00000071379.3	ENSMUST00000222944.2	697	5	39002	-817	39002	10	3prime_fragment	FALSE	canonical	3	21	junction_1	29.3522666170018	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTGCAGCATTC	NA	False	NA	NA	False	NA	NA	NA	17817228	17841944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_17817301_17836147_17836550_17837545_17837652_17841107
62613	chr14	+	2814	1	NIC	ENSMUSG00000021767.20	novel	6791	17	NA	NA	32368	-9940	mono-exon	FALSE	NA	NA	NA	NA	NA	2	89	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGCAGCACCTCCACAT	NA	False	NA	NA	False	NA	NA	NA	21708187	21711001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21708200_21711000
62616	chr17	-	1279	4	FSM	ENSMUSG00000057411.10	ENSMUST00000235327.2	1267	4	-15	3	-1	2	multi-exon	FALSE	canonical	3	179	junction_3	24.4449494897321	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATCCTGACTTTTGTTTGT	8377	False	NA	NA	False	NA	NA	NA	26011362	26009482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545
62617	chr9	+	1999	4	FSM	ENSMUSG00000031937.8	ENSMUST00000034413.8	1991	4	-3	-5	-3	5	multi-exon	FALSE	canonical	3	5	junction_3	3.68178700572909	37	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTTTGTTTTTCAGTGA	NA	False	NA	NA	False	NA	NA	NA	15150337	15170717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_15150655_15168525_15168853_15168946_15169088_15169503
62619	chr17	-	2505	6	FSM	ENSMUSG00000071256.5	ENSMUST00000095606.5	2686	6	168	13	168	-13	multi-exon	FALSE	canonical	3	33	junction_4	6.49923072370877	21	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTCCTCTAAGCTGTGA	6852	False	NA	NA	False	NA	NA	NA	23783044	23775753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23777287_23778356_23778523_23778607_23778679_23778958_23779077_23780119_23780635_23782942
62620	chr10	-	2223	4	FSM	ENSMUSG00000020067.9	ENSMUST00000218978.2	1833	4	100	-490	100	8	multi-exon	FALSE	canonical	3	18	junction_3	3.29983164553722	37	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCATGTGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	62958363	62951565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680
62623	chr11	+	1933	6	FSM	ENSMUSG00000036819.15	ENSMUST00000108777.10	4351	6	51	2367	-25	0	multi-exon	FALSE	canonical	3	15	junction_3	13.8506317545446	95	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGAGTTCCTTTTTTATA	9532	False	NA	NA	False	NA	NA	NA	59340921	59346932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344617_59344886_59345758_59345906_59346132
62624	chr16	+	719	4	NNC	ENSMUSG00000039680.11	novel	846	3	NA	NA	52	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	117.457320854097	18	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGACGGCTGTATTGC	6337	False	NA	NA	False	NA	NA	NA	91855209	91909111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91855369_91896481_91896622_91908620_91908766_91908836
62625	chr17	+	1239	2	FSM	ENSMUSG00000033739.9	ENSMUST00000174796.2	257	2	19	-1001	19	-1	multi-exon	FALSE	canonical	2	5	junction_1	0	43	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAACTGTGGTCTGTGTTGT	7455	False	NA	NA	False	NA	NA	NA	34863833	34865297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34863928_34864152
62626	chr11	+	1662	7	FSM	ENSMUSG00000035413.9	ENSMUST00000040865.9	1633	7	192	-221	192	221	multi-exon	FALSE	canonical	3	29	junction_1	3.67045259092421	116	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAGGTTCATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	80701192	80713080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80701286_80703331_80703516_80705044_80705177_80706491_80706526_80708328_80708445_80710755_80710816_80712037
62627	chr8	+	1647	2	Antisense	novelGene_ENSMUSG00000037070.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	102	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCGTCTGCCGCCGCCGCT	5969	False	NA	NA	False	NA	NA	NA	79231901	79235482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_79233495_79235428
62628	chr17	+	1023	1	ISM	ENSMUSG00000036036.16	ENSMUST00000089968.13	1991	6	8447	0	5007	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	37320501	37321524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_37320500_37321500
62629	chr12	+	439	3	Antisense	novelGene_ENSMUSG00000020593.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGCAGCAGGACACACCT	336	False	NA	NA	False	NA	NA	NA	16672625	16686099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_16672716_16679137_16679202_16685814
62630	chr15	-	846	8	FSM	ENSMUSG00000022635.10	ENSMUST00000076070.9	877	8	27	4	-6	0	multi-exon	FALSE	canonical	3	583	junction_1	44.8289265214016	760	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTGTGGAATAGTGAC	NA	False	NA	NA	False	NA	NA	NA	93296188	93283990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
62632	chr9	+	3309	19	Antisense	novelGene_ENSMUSG00000040661.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	56	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTCCGCTCGCGGTC	NA	False	NA	NA	False	NA	NA	NA	106577845	106666368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_106577896_106579846_106580036_106580688_106580864_106581263_106581474_106582971_106583066_106585412_106585533_106587532_106587651_106587865_106588119_106589530_106589708_106590441_106590786_106593259_106593456_106594383_106594517_106594945_106595136_106596118_106596339_106596806_106596927_106597526_106597664_106599914_106600114_106631143_106631337_106666177
62633	chr15	+	2523	7	NIC	ENSMUSG00000022307.17	novel	798	6	NA	NA	-4	-19	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	130.404072874363	152	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTAAATGCATAAATGCA	NA	False	NA	NA	False	NA	NA	NA	41694348	41724422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_41694526_41701647_41701676_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
62636	chr7	-	1034	8	NIC	ENSMUSG00000036845.13	novel	998	9	NA	NA	5	-43	intron_retention	FALSE	canonical	3	222	junction_2	23.7959008646276	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACTGGCCAGGCCATC	4877	False	NA	NA	False	NA	NA	NA	30259079	30254912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
62637	chr3	-	879	7	ISM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	4	5556	4	252	5prime_fragment	FALSE	canonical	3	827	junction_2	41.8728233265125	110	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTTATTATTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	88857254	88836497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
62638	chr2	+	1466	9	FSM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	15	4	15	-1	multi-exon	FALSE	canonical	3	17	junction_4	4.24264068711928	102	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGGCTTCTGGGTTCA	3141	False	NA	NA	False	NA	NA	NA	25293097	25299502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
62639	chr5	-	371	1	ISM	ENSMUSG00000037685.16	ENSMUST00000135930.8	8069	36	228848	12	41512	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATTACATAAAGGAACTGG	8352	False	NA	NA	False	NA	NA	NA	67775865	67775494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_67775500_67775900
62640	chrX	+	1026	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	-18	2	-18	-2	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	864	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGGCTCCATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	36915768	36918732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
62641	chr9	+	1381	3	Antisense	novelGene_ENSMUSG00002076457.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCGTCACTTCCGGAAG	NA	False	NA	NA	False	NA	NA	NA	64633083	64645034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_64634100_64635515_64635712_64644865
62642	chr5	-	1481	16	Antisense	novelGene_ENSMUSG00000107165.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	55	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAACCTCGGTGGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	74756561	74696204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_74696420_74697463_74697503_74697598_74697640_74701589_74701650_74702668_74702777_74706080_74706136_74706711_74706819_74707349_74707482_74717696_74717812_74731758_74731859_74733092_74733248_74747665_74747717_74748803_74748851_74752600_74752652_74755731_74755856_74756480
62643	chr2	+	1858	14	FSM	ENSMUSG00000027134.5	ENSMUST00000028554.4	2275	14	412	5	412	-5	multi-exon	FALSE	canonical	3	65	junction_5	5.67252278910358	107	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGGTCCAGAGGGTGGAA	NA	False	NA	NA	False	NA	NA	NA	112070224	112077451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_112070403_112071795_112071939_112072269_112072491_112072820_112072934_112073045_112073107_112073348_112073408_112073603_112073639_112074185_112074241_112074327_112074411_112074664_112074791_112075007_112075141_112076140_112076240_112076619_112076777_112077056
62648	chr6	+	1425	1	ISM	ENSMUSG00000002897.6	ENSMUST00000204239.3	4804	11	19020	38	8664	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	7	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTAATGAAGACTTAATAA	NA	False	NA	NA	False	NA	NA	NA	120459227	120460652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_120459200_120460700
62650	chr19	-	1871	10	NNC	ENSMUSG00000042694.18	novel	1992	10	NA	NA	6	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	42.6562487281237	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGCTTGGCATTTCAA	NA	False	NA	NA	False	NA	NA	NA	47525457	47489489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517177_47524641_47524811_47525252
62652	chr8	+	1376	11	Antisense	novelGene_ENSMUSG00000110635.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGTTTTCGAACCAGTT	NA	False	NA	NA	False	NA	NA	NA	96174599	96214267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_96175045_96179975_96180072_96182485_96182635_96184015_96184117_96186699_96186811_96187312_96187417_96188173_96188265_96192287_96192339_96199998_96200050_96203839_96203942_96214192
62653	chr8	+	1090	4	NNC	ENSMUSG00000071078.7	novel	1078	4	NA	NA	-16	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	271.261661295674	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAACACCCCATTTGT	431	False	NA	NA	False	NA	NA	NA	70583966	70586394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70584250_70584567_70584659_70585236_70585301_70585742
62654	chr16	-	2204	11	ISM	ENSMUSG00000022747.18	ENSMUST00000114357.10	1918	12	621	-456	-11	-3	3prime_fragment	FALSE	canonical	1	1	junction_6	1.78885438199983	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAAAACCTTAAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	58343927	58290118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810_58327978_58343864
62655	chr12	-	1175	5	FSM	ENSMUSG00000021067.9	ENSMUST00000021467.8	2524	5	306	1043	306	-1007	multi-exon	FALSE	canonical	3	134	junction_4	6.57171971404746	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTATTTGGAAGTATAAAA	NA	False	NA	NA	False	NA	NA	NA	70033470	70012828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_70013122_70015843_70015988_70022741_70023013_70030982_70031427_70033447
62656	chr15	+	404	1	Genic_Genomic	ENSMUSG00000039801.8	novel	NA	NA	NA	NA	-46	-17602	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCCGATTTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	8198543	8198947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_8198500_8198900
62657	chr7	-	1564	7	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	-1063	-10	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	92	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCCACCAGTCCTAGCT	5923	False	NA	NA	False	NA	NA	NA	44991647	44988560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
62658	chr17	+	1490	3	FSM	ENSMUSG00000023906.4	ENSMUST00000024699.4	1622	3	123	9	0	-5	multi-exon	FALSE	canonical	2	3	junction_1	4	87	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAATGTGTCTGATG	NA	False	NA	NA	False	NA	NA	NA	23898345	23901411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_23898382_23898731_23898796_23900021
62659	chr8	-	1133	3	ISM	ENSMUSG00000031489.16	ENSMUST00000081438.10	2795	4	2016	4	922	-4	3prime_fragment	FALSE	canonical	1	3	junction_1	62.5	96	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTGTCCCCTGCTCG	NA	False	NA	NA	False	NA	NA	NA	27717600	27715807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_27716557_27716753_27716822_27717284
62660	chr11	-	1936	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109992.8	1945	10	-10	19	5	-19	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTTGATTTACCTGAC	NA	False	NA	NA	False	NA	NA	NA	3881799	3867210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881724
62662	chr4	-	1187	4	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	912.117073382335	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATACATGCTACAGGAACT	2	True	NA	NA	False	NA	NA	NA	41098180	41092739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093550_41094767_41094839_41095144_41095272_41098001
62663	chr4	-	1918	15	FSM	ENSMUSG00000028860.14	ENSMUST00000030674.8	1951	15	18	15	-8	-7	multi-exon	TRUE	canonical	1	4	junction_9	2.42541812090709	29	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTACAGAGCTACTGACTG	NA	False	NA	NA	False	NA	NA	NA	132990406	132980415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132980620_132980765_132980972_132982843_132982944_132983044_132983124_132983352_132983512_132983798_132983896_132984175_132984343_132984446_132984561_132984727_132984823_132985044_132985133_132986171_132986218_132986292_132986369_132986598_132986748_132988163_132988393_132990297
62664	chr4	-	437	1	Intergenic	novelGene_1917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTGGTTTATGTAGAG	NA	False	NA	NA	False	NA	NA	NA	108155698	108155261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_108155300_108155700
62665	chr17	+	662	1	NIC	ENSMUSG00000116564.2	novel	3220	10	NA	NA	24	-10387	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGCCGGAGAAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	17594875	17595537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_17594900_17595500
62666	chr7	+	1513	1	FSM	ENSMUSG00000065016.3	ENSMUST00000083082.3	132	1	-902	-479	-902	479	mono-exon	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATTATGTATGGATGGT	NA	False	NA	NA	False	NA	NA	NA	109118424	109119937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109118400_109119900
62667	chr10	-	1138	3	Intergenic	novelGene_3405	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	118	junction_1	2.5	730	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGATTAACAGTGATACTC	NA	False	NA	NA	False	NA	NA	NA	21934519	21930291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_21931017_21933427_21933570_21934248
62668	chr9	-	1318	7	NIC	ENSMUSG00000042210.18	novel	1256	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.893067242576	707	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGACGTTGTGTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	106324877	106317251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_106317604_106317819_106318110_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
62669	chr4	+	603	5	NNC	ENSMUSG00000029066.13	novel	764	4	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	576.226517959734	30	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	155888083	155893288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935_155892960_155893014
62670	chr9	+	1472	8	NNC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	-2	-1	intron_retention	FALSE	canonical	0	0	junction_1	295.954629727502	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTTGTTTTCATTTAA	2367	False	NA	NA	False	NA	NA	NA	21323130	21331555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21323396_21323528_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21331009_21331331
62672	chr5	-	2146	1	Intergenic	novelGene_829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTGAGGAGATACAGGG	8123	False	NA	NA	False	NA	NA	NA	115292839	115290693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_115290700_115292800
62674	chr13	-	1027	1	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	20843	-95	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGATTGAATCTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	97313960	97312933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97312900_97314000
62675	chr13	+	971	5	NIC	ENSMUSG00000052293.15	novel	794	3	NA	NA	0	10346	combination_of_known_splicesites	FALSE	canonical	3	171	junction_1	308.682988679325	51	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGATACATGGTCAGTA	NA	False	NA	NA	False	NA	NA	NA	100788132	100802914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_100788226_100790698_100790792_100800402_100800462_100800558_100800705_100802334
62677	chr3	-	175	1	ISM	ENSMUSG00000028115.17	ENSMUST00000107195.9	1810	10	38	9710	-7	-5766	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACGTTAGAAGGAGGGTAA	NA	False	NA	NA	False	NA	NA	NA	95158466	95158291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95158300_95158500
62678	chr19	-	643	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	14	23	0	-8	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	153	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAAGCTCAGTGCTCTG	1988	False	NA	NA	False	NA	NA	NA	44543865	44538701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
62679	chr5	+	2127	11	ISM	ENSMUSG00000028978.13	ENSMUST00000030834.7	4132	26	12900	144	12900	3	3prime_fragment	FALSE	canonical	2	4	junction_2	2.64764045897475	29	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGTGAGTTACAATGATT	4968	False	NA	NA	False	NA	NA	NA	24582707	24589328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_24582984_24584706_24584840_24584946_24585026_24585170_24585359_24585867_24586041_24586361_24586573_24586651_24586740_24587522_24587645_24588257_24588407_24588527_24588723_24588815
62681	chrX	-	1047	6	NNC	ENSMUSG00000031157.11	novel	1148	7	NA	NA	-26	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	221.067953353714	5	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGAGGCTTGAGTGCTT	643	False	NA	NA	False	NA	NA	NA	7765161	7760758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7761107_7761403_7761468_7761842_7762145_7762556_7762652_7764789_7764876_7765009
62682	chr12	+	2905	4	Antisense	novelGene_ENSMUSG00000021179.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAAGCTTCAGCTCCACGC	NA	False	NA	NA	False	NA	NA	NA	100098394	100108404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_100100792_100103916_100104036_100106261_100106397_100108150
62683	chr19	-	1162	3	Genic_Genomic	ENSMUSG00000084957.4	novel	986	1	NA	NA	-58502	-796	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGGCTTCAAAACTCCCT	NA	False	NA	NA	False	NA	NA	NA	53991560	53932719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_53932835_53975888_53976813_53991437
62684	chr7	+	1010	7	NIC	ENSMUSG00000030588.13	novel	1126	8	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	563.140721509484	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6048	False	NA	NA	False	NA	NA	NA	28937764	28946954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28937862_28943494_28943728_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
62685	chr18	+	753	5	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	4	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	192.285432365533	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGTTTTATCTGGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	67774681	67787234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67786955
62686	chr2	-	2066	2	FSM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	-10	0	-10	0	multi-exon	FALSE	canonical	3	207	junction_1	0	440	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	NA	False	NA	NA	NA	157408267	157398281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_157400248_157408167
62688	chr15	-	1118	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	22	1524	-16	-1524	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	9	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATTCCATGTGTAAATAC	NA	False	NA	NA	False	NA	NA	NA	10486011	10476388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
62689	chr17	+	1636	7	NIC	ENSMUSG00000094724.9	novel	905	9	NA	NA	2099	0	intron_retention	FALSE	canonical	3	652	junction_2	40.7366201619897	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	7248505	7265589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_7248568_7251537_7252513_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
62692	chr7	+	679	6	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7156.35154530575	7	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656229	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659760_12660358_12660422_12660498
62693	chr10	+	2317	11	NNC	ENSMUSG00000112129.2	novel	2404	9	NA	NA	-285	-75	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	1.90787840283389	23	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAATTTTCTTTTTTTTT	1309	False	NA	NA	False	NA	NA	NA	62897075	62913666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_62897246_62897336_62897481_62901562_62901663_62902303_62902403_62903207_62903318_62903436_62903467_62907185_62907275_62907647_62907827_62910839_62910903_62912127_62913125_62913330
62694	chr8	-	1773	1	FSM	ENSMUSG00000036550.17	ENSMUST00000212535.2	1546	1	-580	353	-580	-353	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCATTCCGTTGACGGAA	NA	False	NA	NA	False	NA	NA	NA	96459944	96458171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96458200_96459900
62695	chr4	-	1201	4	NIC	ENSMUSG00000078584.10	novel	657	6	NA	NA	0	740	combination_of_known_splicesites	FALSE	canonical	3	29	junction_3	165.023903992388	29	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTCAGTAGTCCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	119089875	119082838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_119083725_119083997_119084130_119085223_119085311_119089779
62697	chr7	+	1365	1	Intergenic	novelGene_3037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCACCCACATTCCTTT	NA	False	NA	NA	False	NA	NA	NA	127144056	127145421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_127144100_127145400
62698	chr2	-	925	8	NIC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-6	-3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	125.628542187852	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATGGCTCAGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	26806486	26803397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26805443_26805527_26805607_26805742_26805966_26806019_26806268
62700	chr7	-	1069	6	Antisense	novelGene_ENSMUSG00000061286.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	14	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGCTGCGGCTCCCACCG	2300	False	NA	NA	False	NA	NA	NA	25367421	25358647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_25358807_25362559_25362673_25363602_25363872_25364845_25364985_25365675_25365766_25367122
62701	chr3	-	2199	6	ISM	ENSMUSG00000074238.7	ENSMUST00000051737.8	2662	10	20502	1	298	-1	3prime_fragment	FALSE	canonical	3	421	junction_4	24.0249869927124	132	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATATTTGCATCATGGCT	NA	False	NA	NA	False	NA	NA	NA	127610658	127600661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_127602403_127605864_127605994_127606182_127606257_127606888_127606945_127609244_127609344_127610558
62702	chr15	-	2715	3	NNC	ENSMUSG00000035891.17	novel	2162	8	NA	NA	8764	-49	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	5.5	35	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATTTGAGAAGACAAAAA	6307	False	NA	NA	False	NA	NA	NA	86027885	86023378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_86025814_86026882_86027092_86027814
62703	chr6	+	3466	1	Intergenic	novelGene_4144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	119	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTCCCAAAGCTTGA	NA	False	NA	NA	False	NA	NA	NA	37802994	37806460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_37803000_37806500
62704	chr19	+	955	5	FSM	ENSMUSG00000060675.14	ENSMUST00000136756.2	1901	5	44	902	44	-902	multi-exon	FALSE	canonical	3	44	junction_1	71.8135606971274	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTACCTGGTGTGAAGTC	NA	False	NA	NA	False	NA	NA	NA	7534893	7563174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_7535168_7535296_7535361_7552301_7552405_7556318_7556588_7562929
62706	chr7	-	1136	9	NNC	ENSMUSG00000001794.14	novel	1429	11	NA	NA	-37	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	541.795856388732	18	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGAGTAACTTGGTTATT	NA	False	NA	NA	False	NA	NA	NA	29894510	29886368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29886826_29889923_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
62707	chr14	-	3153	3	ISM	ENSMUSG00000033405.5	ENSMUST00000043813.3	3579	5	23025	0	-6	0	3prime_fragment	FALSE	canonical	2	19	junction_1	0.5	58	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCTCAGAGACTTAATTG	NA	False	NA	NA	False	NA	NA	NA	73762657	73756316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_73759115_73760737_73760935_73762499
62708	chr7	-	1946	8	NNC	ENSMUSG00000025813.15	novel	1736	9	NA	NA	-30806	393	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.399664936414	24	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCAGAACTTAGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	81299459	81259084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090_81264250_81268323_81268431_81273999_81274093_81286108_81286241_81299301
62710	chr13	-	1242	6	Antisense	novelGene_ENSMUSG00000021707.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	56	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAAGTTAGAGAAACAGT	8653	False	NA	NA	False	NA	NA	NA	92522182	92492157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_92492204_92494437_92494536_92502167_92502298_92504690_92504809_92521232_92521565_92521664
62711	chr11	-	2056	19	NNC	ENSMUSG00000018574.15	novel	2020	19	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	65.0021129761027	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGCCGTGAATGTCAC	NA	False	NA	NA	False	NA	NA	NA	69906206	69901013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69904009_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905942_69906017_69906084
62712	chrX	-	1053	1	NIC	ENSMUSG00000025151.17	novel	2821	13	NA	NA	-7	-464	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCGCCCCATCCCCCAA	NA	False	NA	NA	False	NA	NA	NA	93585616	93584563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_93584600_93585600
62713	chr13	-	3810	2	Genic_Genomic	ENSMUSG00000046351.12	novel	4844	4	NA	NA	14	-1849	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAAGGCCAGGCAAAGT	3751	False	NA	NA	False	NA	NA	NA	23552367	23548021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_23548264_23548799
62714	chr8	+	1296	9	NNC	ENSMUSG00000031505.12	novel	1307	10	NA	NA	6	-4	intron_retention	FALSE	canonical	0	0	junction_5	94.4454207465878	467	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTTGGAGTTTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	11547573	11563283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556823_11559347_11559558_11560226_11560348_11561876_11561998_11562894
62715	chr15	+	1723	3	ISM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	45	-2	22	-1	intron_retention	FALSE	canonical	3	810	junction_1	15.5	22	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTTCTATTCAATGTCT	154	False	NA	NA	False	NA	NA	NA	36174200	36177155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_36174228_36175132_36175203_36175529
62716	chr9	-	1136	3	NNC	ENSMUSG00000051234.7	novel	1232	3	NA	NA	-13	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	552.5	6	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATTAATATGCTCTTT	3700	False	NA	NA	False	NA	NA	NA	96360741	96352999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96353815_96356018_96356059_96360460
62717	chr7	-	1686	1	NIC	ENSMUSG00000061028.8	novel	2180	21	NA	NA	905	1472	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGATGCCACAGACAGAA	NA	False	NA	NA	False	NA	NA	NA	19328470	19326784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_19326800_19328500
62719	chr7	+	1471	13	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	-10	-7	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	13.8283123417944	45	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAGAACACACGTTT	NA	False	NA	NA	False	NA	NA	NA	116103639	116139812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
62720	chr6	-	3414	10	FSM	ENSMUSG00000035357.18	ENSMUST00000075994.11	4104	10	662	28	107	-28	multi-exon	FALSE	canonical	3	11	junction_6	4.85340659285368	1	118	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTATTATTTTCTATT	NA	False	NA	NA	False	NA	NA	NA	101354196	101126597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101331354_101331463_101339099_101339187_101354126
62721	chr17	-	1136	4	NNC	ENSMUSG00000040888.11	novel	1177	4	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	273.584843634779	257	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGGGCTGGTTTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	24915052	24912165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24912587_24913146_24913417_24914227_24914425_24914804
62722	chr9	-	1079	9	Antisense	novelGene_ENSMUSG00000056267.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTTGAAGCCATGTGTCA	NA	False	NA	NA	False	NA	NA	NA	99173652	99144658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_99144688_99144876_99145003_99145681_99145861_99157628_99157832_99159437_99159497_99159987_99160213_99163078_99163156_99171248_99171353_99173575
62724	chr9	+	912	7	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1448	137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7380.88771573056	1	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGCCTACTACAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	64082122	64085689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082266_64082475_64082529_64082865_64082966_64083361_64083499_64084602_64084760_64085162_64085300_64085504
62725	chr5	+	1140	2	FSM	ENSMUSG00000029149.15	ENSMUST00000201393.2	1088	2	14	-66	5	-39	multi-exon	FALSE	canonical	3	93	junction_1	0	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCCGTCAGGACTTCCA	NA	False	NA	NA	False	NA	NA	NA	31409073	31410301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31409448_31409535
62726	chr9	+	920	1	Intergenic	novelGene_1015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTCATTTGTTAGCAAATA	9592	False	NA	NA	False	NA	NA	NA	37257328	37258248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_37257300_37258200
62727	chr9	+	786	2	Antisense	novelGene_ENSMUSG00000034303.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGCAAAGGACAAACAGCAA	NA	False	NA	NA	False	NA	NA	NA	37258500	37259630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_37259223_37259566
62728	chr7	+	1306	4	ISM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	648	23	586	-23	3prime_fragment	FALSE	canonical	3	381	junction_2	16.3095064303001	2	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAGACTGGAAGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	109303544	109311373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109304239_109306604_109306719_109308147_109308229_109310956
62729	chr8	-	2040	1	Intergenic	novelGene_1622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTTGTTTTTTTT	5071	False	NA	NA	False	NA	NA	NA	41107788	41105748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_41105700_41107800
62730	chr4	+	752	2	ISM	ENSMUSG00000028330.9	ENSMUST00000133286.2	781	8	5156	-431	5156	7	3prime_fragment	FALSE	canonical	3	420	junction_1	0	1	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATGGTTTATCATCTTA	4279	False	NA	NA	False	NA	NA	NA	46170351	46172410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_46170586_46171892
62731	chr1	+	1999	9	Genic_Genomic	ENSMUSG00000101172.2	novel	885	3	NA	NA	3526	3627	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGGAGGGTCACAACCT	1372	False	NA	NA	False	NA	NA	NA	93237211	93248658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_93237972_93238489_93238637_93240517_93240648_93241998_93242203_93244506_93244640_93244740_93244866_93247678_93247852_93248216_93248375_93248489
62732	chr7	+	828	5	NIC	ENSMUSG00000078681.11	novel	905	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	208.078711068672	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	NA	False	NA	NA	NA	65343208	65351650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_65343318_65344917_65345076_65347443_65347619_65348839_65348916_65351340
62733	chr19	-	1022	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	-43	5	19	-5	multi-exon	FALSE	canonical	3	13	junction_5	206.828727330078	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCATTCTGTGTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	4889341	4875398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
62734	chr19	-	3000	3	Antisense	novelGene_ENSMUSG00000036450.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	86	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGCTCCGCCCTTTCCGG	NA	False	NA	NA	False	NA	NA	NA	44556823	44551286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44551492_44551726_44554476_44556777
62735	chr3	+	2428	24	NNC	ENSMUSG00000028030.13	novel	6578	26	NA	NA	2575	18376	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	36.4474918167952	1	122	18	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAGCATCAACATCCCAT	NA	False	NA	NA	False	NA	NA	NA	132392535	132520971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_132392754_132400143_132400217_132411273_132411389_132413545_132413620_132421349_132421489_132424380_132424442_132426281_132426344_132428066_132428125_132428428_132428578_132430542_132430676_132431435_132431522_132432417_132432468_132432811_132432942_132437926_132438026_132440107_132440171_132440478_132440606_132441834_132441886_132443265_132443350_132448764_132448849_132456947_132456985_132458268_132458431_132480181_132480358_132507264_132507441_132520950
62736	chr9	-	1561	1	Intergenic	novelGene_1029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAATGTGTTTGGTTCC	6225	False	NA	NA	False	NA	NA	NA	48382153	48380592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_48380600_48382200
62737	chr4	-	1497	7	NNC	ENSMUSG00000000409.15	novel	2185	12	NA	NA	-44	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	52.1996700713286	4	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCTCAATAAAAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	129450296	129442175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129442794_129445297_129445397_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080
62739	chr9	-	2219	1	Intergenic	novelGene_1049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	528	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAACGGCTGCGAAGCC	NA	False	NA	NA	False	NA	NA	NA	56860547	56858328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_56858300_56860500
62740	chr16	-	1688	1	Intergenic	novelGene_3632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGAGACCGCCTGAATCT	7913	False	NA	NA	False	NA	NA	NA	29837833	29836145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_29836100_29837800
62741	chr13	+	1044	6	NNC	ENSMUSG00000021486.8	novel	2644	5	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	539.270395998149	9	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTTCTGGAGTCAGATA	5567	False	NA	NA	False	NA	NA	NA	55469845	55473081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642_55472882_55472944
62742	chr16	-	1192	6	NIC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	-6	-4	combination_of_known_junctions	FALSE	canonical	3	413	junction_5	4809.89758726732	38	26	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCTTTGAAAACCTG	7425	False	NA	NA	False	NA	NA	NA	18066304	18057669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18065990
62743	chr9	+	1699	1	Intergenic	novelGene_979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCATTTACATTTCCAA	1514	False	NA	NA	False	NA	NA	NA	3405592	3407291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_3405600_3407300
62744	chr12	+	1345	9	Antisense	novelGene_ENSMUSG00000056458.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCGCCAGACCCTTAGGAG	NA	False	NA	NA	False	NA	NA	NA	110774233	110807364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110774559_110774641_110774840_110776342_110776457_110778211_110778315_110779948_110780130_110781401_110781454_110781571_110781646_110800561_110800675_110807179
62746	chr11	+	1490	5	FSM	ENSMUSG00000020299.7	ENSMUST00000102829.4	2000	5	-30	540	-30	-540	multi-exon	FALSE	canonical	3	12	junction_4	0.707106781186548	25	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTGAACAGCAGATGTG	2254	False	NA	NA	False	NA	NA	NA	31915561	31929111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_31915952_31923555_31923642_31925036_31925136_31926785_31926831_31928241
62747	chr2	-	1667	1	Genic_Genomic	ENSMUSG00000038914.16	novel	NA	NA	NA	NA	-10	-23319	mono-exon	FALSE	NA	NA	NA	NA	NA	39	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACTTTATGCATAAGGAT	NA	False	NA	NA	False	NA	NA	NA	180351802	180350135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_180350100_180351800
62749	chr19	-	577	5	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	31	-648	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	537.016468555667	3	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGTGGTGAGCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	7183650	7176222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176436_7177307_7177427_7181422_7181522_7181754_7181817_7183566
62750	chr10	+	1615	4	NNC	ENSMUSG00000112527.2	novel	423	2	NA	NA	-121	482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.471404520791032	69	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAACAAAACAAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	121346181	121362488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_121346531_121358701_121359335_121359631_121360198_121362421
62751	chr14	-	1463	3	NNC	ENSMUSG00000041625.16	novel	1076	3	NA	NA	7087	1	intron_retention	FALSE	canonical	2	4	junction_2	18	417	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGCTGTTGCTGTTTGGT	NA	False	NA	NA	False	NA	NA	NA	123143410	123128281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_123129229_123137887_123137945_123142951
62752	chr15	-	1589	9	FSM	ENSMUSG00000022621.17	ENSMUST00000023294.15	1640	9	39	12	2	-8	multi-exon	FALSE	canonical	3	40	junction_3	5.95818764390649	110	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTTCGTAAACACTAAGG	1357	False	NA	NA	False	NA	NA	NA	89476087	89466747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468481_89468594_89470461_89470542_89471116_89471197_89472390_89472421_89474475_89474630_89476022
62753	chr2	-	1918	10	NNC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	23	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	180.470441477029	1	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAATAAAATAAATCCAAA	NA	False	NA	NA	False	NA	NA	NA	34760922	34742135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_34742805_34744259_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
62754	chr16	+	1178	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-108	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1361.98577452189	6	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTTACACTTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	84571165	84619772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
62756	chr5	+	2120	4	NIC	ENSMUSG00000029660.11	novel	1456	7	NA	NA	-1	-7917	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	0.816496580927726	3	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	149363178	149386080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_149363253_149369234_149369320_149376758_149376925_149384285
62757	chr17	-	1742	19	NNC	ENSMUSG00000073460.6	novel	2092	19	NA	NA	369	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	53.6692258419025	2	56	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACCCTTGTGTGTCGGA	3396	False	NA	NA	False	NA	NA	NA	13128411	13107635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13109887_13109943_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114481_13116141_13116221_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348
62758	chr1	+	1090	9	NIC	ENSMUSG00000026197.13	novel	1316	9	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_8	44.3727112085795	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATGAGTGCTGTTTCT	2165	False	NA	NA	False	NA	NA	NA	75145422	75148268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
62759	SIRV6	-	735	4	Antisense	novelGene_SIRV6A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTCGTTACCCATGTCAA	NA	False	NA	NA	False	NA	NA	NA	11330	10234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV6_-_10456_10508_10825_11035_11109_11205
62760	chrX	-	842	4	FSM	ENSMUSG00000068048.9	ENSMUST00000089062.8	882	4	40	0	-26	0	multi-exon	FALSE	canonical	3	53	junction_2	21.013223349966	316	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGGCTCCATTATCTT	1118	False	NA	NA	False	NA	NA	NA	36990607	36987973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36988177_36989156_36989203_36989828_36990289_36990474
62761	chr1	+	1627	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	6	256	6	-256	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	10	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATAACTGTCAATCTCC	NA	False	NA	NA	False	NA	NA	NA	118249574	118261296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
62762	chr4	-	1148	9	Antisense	novelGene_ENSMUSG00000078772.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	264	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCCAGAGACCGGAAATA	4841	False	NA	NA	False	NA	NA	NA	19606209	19575072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_19575326_19580387_19580505_19586772_19586862_19588523_19588684_19595067_19595158_19599611_19599669_19601354_19601473_19605400_19605535_19606079
62763	chr11	-	1776	10	FSM	ENSMUSG00000018566.15	ENSMUST00000141837.9	1776	10	-11	11	0	-11	multi-exon	FALSE	canonical	3	12	junction_1	3.19722101554181	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAACTTTCTATTAATGC	NA	False	NA	NA	False	NA	NA	NA	69839001	69834628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
62764	chr1	+	1479	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	18	666	18	-666	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAACAACCAGCAATA	NA	False	NA	NA	False	NA	NA	NA	165591332	165602211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
62766	chr3	+	1515	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	24	8	-4	-6	multi-exon	FALSE	canonical	3	242	junction_2	10.5	133	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCTAATTTAACTTAGCA	NA	False	NA	NA	False	NA	NA	NA	145643792	145650576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145644084_145644652_145644852_145649551
62767	chr8	+	2599	21	NNC	ENSMUSG00000034112.10	novel	3222	27	NA	NA	33778	-10	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	3.00790624853901	18	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATTTAACTCATCTCT	NA	False	NA	NA	False	NA	NA	NA	120460586	120484446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120460748_120461026_120461177_120461248_120461318_120461965_120462042_120465132_120465200_120469068_120469194_120469331_120469430_120471056_120471159_120472252_120472343_120474352_120474455_120474893_120475051_120475762_120475934_120476511_120476610_120476699_120476751_120477898_120478066_120479526_120479596_120479682_120479800_120480940_120481089_120482276_120482376_120482713_120482856_120484106
62768	chr17	+	2064	6	NNC	ENSMUSG00000002250.17	novel	739	5	NA	NA	-5	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3.49857113690718	68	24	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTGACTTGTAGCCAT	NA	False	NA	NA	False	NA	NA	NA	28451715	28520439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28451839_28455985_28456070_28505234_28505442_28514314_28514470_28516059_28516140_28519024
62769	chr10	-	3114	1	Genic_Genomic	ENSMUSG00000035948.14	novel	NA	NA	NA	NA	16149	1672	mono-exon	FALSE	NA	NA	NA	NA	NA	3	102	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGGGGGGTGAATAAAAC	NA	False	NA	NA	False	NA	NA	NA	106943295	106940181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_106940200_106943300
62771	chr9	+	1622	1	ISM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	16695	0	3438	0	mono-exon	FALSE	NA	NA	NA	NA	NA	235	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTGCCTAGTTCCTAA	NA	False	NA	NA	False	NA	NA	NA	109721341	109722963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_109721300_109723000
62773	chr12	-	514	6	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	5398.53196341376	9	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685878	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28681193_28681622_28681774_28684279_28684352_28685414_28685487_28685578_28685663_28685854
62775	chr11	+	1491	3	FSM	ENSMUSG00000020903.14	ENSMUST00000108675.2	1497	3	9	-3	-1	3	multi-exon	FALSE	canonical	3	260	junction_1	29.5	28	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGGGGGCCTTCTTTCAA	NA	False	NA	NA	False	NA	NA	NA	67857314	67865420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_67857344_67860597_67860698_67864058
62776	chr8	+	1482	3	ISM	ENSMUSG00000052794.14	ENSMUST00000121902.2	2373	8	-3	10492	-3	-8502	5prime_fragment	FALSE	canonical	3	59	junction_1	1.5	25	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAAGTAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	73197772	73203993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_73197834_73198593_73199315_73203293
62777	chr11	+	1104	1	Antisense	novelGene_ENSMUSG00000020914.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGGTTAGGAGAGCTTCCC	6054	False	NA	NA	False	NA	NA	NA	98913900	98915004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_98913900_98915000
62779	chr18	+	1156	4	NNC	ENSMUSG00000117783.2	novel	937	6	NA	NA	3469	10195	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.18241233033047	5	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTATTTTGTTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	83377178	83396465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_83377264_83381662_83381799_83385018_83385238_83395749
62780	chr12	-	1354	5	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.691777320082	1	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105188999	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183321_105183364_105183961_105184481_105184552_105184917_105185089_105188791
62782	chr16	-	2035	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	29	-491	7	491	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	350	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCAGGACTAAGCAGTTG	NA	False	NA	NA	False	NA	NA	NA	38342996	38318217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
62785	chr7	-	2023	5	FSM	ENSMUSG00000030443.17	ENSMUST00000135435.2	577	5	-73	-1373	1	1373	multi-exon	FALSE	canonical	2	5	junction_1	9.23309265630969	31	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTACAAACCATCAGTGAA	NA	False	NA	NA	False	NA	NA	NA	6334276	6324821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_6326423_6326645_6326742_6328451_6328579_6332253_6332316_6334139
62786	chr2	-	1080	8	NIC	ENSMUSG00000015790.17	novel	1151	9	NA	NA	6	-13	intron_retention	FALSE	canonical	3	32	junction_6	116.811727116059	66	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTATGTAAAAACCATGGC	NA	False	NA	NA	False	NA	NA	NA	26806351	26803407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
62787	chr11	+	2552	6	NIC	ENSMUSG00000083161.3	novel	1581	5	NA	NA	-10	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	5.3665631459995	7	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAACTGTTTTAATTCTT	NA	False	NA	NA	False	NA	NA	NA	83115301	83151780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_83115458_83116359_83116512_83134643_83134823_83145102_83146143_83149950_83150065_83150869
62788	chr7	+	892	3	ISM	ENSMUSG00000045467.14	ENSMUST00000107381.8	2392	13	10283	35	9450	-35	3prime_fragment	FALSE	canonical	2	15	junction_2	1.5	37	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGGAGCTAAGTAAACAGT	NA	False	NA	NA	False	NA	NA	NA	79906585	79908908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79906779_79907924_79908106_79908390
62789	chr7	+	2089	9	NIC	ENSMUSG00000030924.17	novel	2492	20	NA	NA	-8	206	intron_retention	FALSE	canonical	2	8	junction_1	9.64040974232942	5	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTACCTTTGTAGTATG	NA	False	NA	NA	False	NA	NA	NA	119393333	119427439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_119393726_119401963_119402061_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525
62790	chr14	+	1592	1	Intergenic	novelGene_526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAATGAAAAACCCCAAA	7019	False	NA	NA	False	NA	NA	NA	21543737	21545329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_21543700_21545300
62791	chr8	+	825	1	Intergenic	novelGene_1607	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCCCCCATACAAATACA	NA	False	NA	NA	False	NA	NA	NA	26651232	26652057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_26651200_26652100
62793	chr18	+	1155	6	FSM	ENSMUSG00000024480.10	ENSMUST00000025357.9	1520	6	155	210	89	-7	multi-exon	FALSE	canonical	3	541	junction_4	49.1064150595419	256	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCAACTGTCAGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	46875097	46923683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46875149_46887437_46887530_46891069_46891182_46912254_46912327_46913727_46913836_46922963
62794	chr3	+	1444	10	FSM	ENSMUSG00000036632.10	ENSMUST00000044567.4	1471	10	20	7	0	-7	multi-exon	FALSE	canonical	3	432	junction_5	39.5777091521022	1741	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGCTCAAGGTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	54642979	54657209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54643071_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
62795	chr14	+	884	9	ISM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	110	930	110	-930	5prime_fragment	FALSE	canonical	3	1001	junction_1	185.490523679783	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGTAAGGTACGGTGGT	NA	False	NA	NA	False	NA	NA	NA	55253020	55260664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506
62798	chr11	+	1160	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	-302	3	-302	-3	multi-exon	FALSE	canonical	3	116	junction_1	0	359	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTATTGTCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	69545837	69547550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69546726_69547278
62800	chr14	+	1605	1	Antisense	novelGene_ENSMUSG00000021782.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAGAGGGATCTGAGAGA	NA	False	NA	NA	False	NA	NA	NA	24195250	24196855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_24195200_24196900
62804	chr4	+	2709	2	ISM	ENSMUSG00000042198.13	ENSMUST00000121110.8	381	4	477	46	-57	10	intron_retention	FALSE	canonical	3	436	junction_1	0	1	97	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTACTGAGTATTTGCAT	446	False	NA	NA	False	NA	NA	NA	3939364	3943482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_3941312_3942720
62805	chr9	+	3347	1	Intergenic	novelGene_1180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATCTTCCCAAACCCCG	NA	False	NA	NA	False	NA	NA	NA	120770337	120773684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_120770300_120773700
62806	chr7	+	1906	1	Antisense	novelGene_ENSMUSG00000092416.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	107	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCATTACATTTGTAAGG	NA	False	NA	NA	False	NA	NA	NA	42122816	42124722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_42122800_42124700
62807	chr7	+	1076	5	ISM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	118	3	56	-3	3prime_fragment	FALSE	canonical	3	347	junction_1	28.0624304008046	1006	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCATTTTATTGCTATT	NA	False	NA	NA	False	NA	NA	NA	109303014	109311393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
62808	chr11	-	2262	11	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	707	3	707	-3	3prime_fragment	FALSE	canonical	0	0	junction_6	8.17373843476778	60	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGGCCCGCTGTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	87765655	87754828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376_87759548_87760072_87760329_87760646_87760808_87762126_87762446_87763414_87763622_87765098_87765229_87765312_87765431_87765608
62810	chr9	-	3982	26	ISM	ENSMUSG00000056724.16	ENSMUST00000133191.8	8782	54	21373	8	-737	-8	3prime_fragment	TRUE	canonical	2	7	junction_5	3.78755858040506	11	31	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATCTTTCGGTTTCTTGA	588	False	NA	NA	False	NA	NA	NA	110461856	110453864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_110454295_110454396_110454533_110454801_110454951_110455030_110455190_110455284_110455402_110455603_110455699_110455800_110455974_110456145_110456256_110456336_110456427_110456874_110456992_110457059_110457158_110457254_110457373_110457461_110457572_110457686_110457818_110457945_110458087_110458183_110458309_110458637_110458734_110458837_110459155_110459257_110459422_110459851_110459988_110460068_110460194_110460409_110460568_110460687_110460838_110460925_110461271_110461357_110461496_110461802
62814	chr4	+	1191	9	Genic_Genomic	ENSMUSG00000002384.3	novel	1326	6	NA	NA	7791	7847	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1868	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGCCGGAAGCCGGCAC	4272	False	NA	NA	False	NA	NA	NA	123020907	123033739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_123021242_123021432_123021573_123024160_123024348_123027026_123027155_123028849_123028949_123029388_123029497_123031311_123031363_123032658_123032757_123033693
62815	chr11	-	1944	3	NNC	ENSMUSG00000034449.8	novel	942	4	NA	NA	-41	327	intron_retention	FALSE	non_canonical	0	0	junction_1	7	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTCTCCTTCTGGGCCT	NA	False	NA	NA	False	NA	NA	NA	84719861	84712490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_84713993_84716190_84716348_84719576
62816	chr2	+	1818	6	NIC	ENSMUSG00000027394.14	novel	4567	7	NA	NA	93	-2534	combination_of_known_splicesites	FALSE	canonical	3	3	junction_1	33.4687914332143	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATCTTACTTTACTTA	NA	False	NA	NA	False	NA	NA	NA	128907997	128935669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_128908224_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
62818	chr16	+	3112	13	ISM	ENSMUSG00000075254.13	ENSMUST00000232568.2	4187	17	41060	-409	-6171	409	3prime_fragment	FALSE	canonical	2	4	junction_9	3.63145976158349	15	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTAGGTTGTCCGTGCT	NA	False	NA	NA	False	NA	NA	NA	33545799	33587592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_33546014_33546670_33547967_33550846_33550964_33551968_33552089_33555910_33556015_33558594_33558654_33558932_33559094_33562731_33562867_33570821_33570865_33571541_33571580_33581127_33581216_33583811_33583987_33587030
62820	chr7	+	1631	10	NNC	ENSMUSG00000073838.11	novel	1679	10	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	275.135118320678	1	90	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	126086555	126089899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126086663_126086759_126086955_126087446_126087599_126087821_126087927_126088018_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
62821	chr3	+	1939	1	NIC	ENSMUSG00000027714.12	novel	2479	7	NA	NA	2856	-1058	mono-exon	FALSE	NA	NA	NA	NA	NA	4	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAAATATCTGATATGCA	NA	False	NA	NA	False	NA	NA	NA	36612557	36614496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_36612600_36614500
62822	chr3	+	500	2	NNC	ENSMUSG00000027714.12	novel	2479	7	NA	NA	-1682	-446	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTGTTTATTGCGCCT	1078	False	NA	NA	False	NA	NA	NA	36614562	36615108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_36614613_36614658
62823	chr2	-	1460	5	Antisense	novelGene_ENSMUSG00000027569.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	136	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATACTACAGGCTCCGC	8529	False	NA	NA	False	NA	NA	NA	180228086	180224561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180224743_180225186_180225313_180226195_180226279_180226587_180226664_180227092
62824	chr7	+	1284	8	NIC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	-3	-2	combination_of_known_junctions	FALSE	canonical	3	2081	junction_2	255.382546188966	162	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCCTGTCTGGTGCCTA	8540	False	NA	NA	False	NA	NA	NA	27869143	27878692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_27869244_27873928_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
62825	chr16	-	1052	2	Genic_Genomic	ENSMUSG00000080797.3	novel	3245	1	NA	NA	-48	1	multi-exon	FALSE	canonical	0	0	junction_1	0	2	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTCCCCCCTCACCAC	4917	False	NA	NA	False	NA	NA	NA	20367254	20363960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_20364897_20367138
62826	chrX	+	849	4	NNC	ENSMUSG00000051257.4	novel	1178	3	NA	NA	175	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1325.40115520631	4	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	NA	False	NA	NA	NA	138234606	138238918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_138235157_138237570_138237608_138237761_138237800_138238694
62827	chr14	-	1894	17	NIC	ENSMUSG00000021884.19	novel	2644	17	NA	NA	12	116	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	13.265910259006	54	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	6664	False	NA	NA	False	NA	NA	NA	31363202	31329809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31363122
62829	chr3	-	1601	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	1	-3	1	3	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	170	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTCTTTGTGTGGCCCTC	1613	False	NA	NA	False	NA	NA	NA	89245334	89240693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
62831	chr5	+	1334	1	Genic_Genomic	ENSMUSG00000029168.15	novel	NA	NA	NA	NA	-2451	138	mono-exon	FALSE	NA	NA	NA	NA	NA	6	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGGCTCAGCAGGTAAA	NA	False	NA	NA	False	NA	NA	NA	30943082	30944416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_30943100_30944400
62832	chr8	+	1030	5	NNC	ENSMUSG00000037296.8	novel	2663	4	NA	NA	66	413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	205.655658808602	3	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTTCTGGTGGAGAGT	8805	False	NA	NA	False	NA	NA	NA	26275680	26292565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_26275746_26276444_26276615_26282184_26282254_26283704_26283821_26291955
62833	chr6	-	1903	6	ISM	ENSMUSG00000029687.17	ENSMUST00000092648.13	2115	18	35729	-243	-1196	21	3prime_fragment	FALSE	canonical	3	896	junction_4	79.0685778296284	2	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATACTTGAACTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	47518865	47507231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610
62834	chr19	+	1885	1	Antisense	novelGene_ENSMUSG00000046324.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACACAGAGAAACCTTATC	NA	False	NA	NA	False	NA	NA	NA	29622664	29624549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_29622700_29624500
62835	chr11	-	3355	10	FSM	ENSMUSG00000010803.14	ENSMUST00000020707.12	4688	10	677	656	-90	-656	multi-exon	FALSE	canonical	1	1	junction_3	2.82842712474619	16	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCTGCCTAAATTTCATG	NA	False	NA	NA	False	NA	NA	NA	42073080	42022421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_42024618_42026234_42026438_42031075_42031229_42037916_42038061_42044160_42044244_42045635_42045857_42053380_42053449_42066728_42066839_42070386_42070476_42072992
62836	chr7	-	2954	9	ISM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	36594	19	-13320	-18	3prime_fragment	FALSE	canonical	3	853	junction_5	48.1740010275252	175	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATGTTCATGAACTTAT	NA	False	NA	NA	False	NA	NA	NA	37682373	37659435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294
62837	chrX	-	1517	12	NNC	ENSMUSG00000002012.14	novel	1492	12	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_11	24.5868338078374	14	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	NA	False	NA	NA	NA	72703408	72699599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72699940_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703272
62838	SIRV6002	-	853	1	Antisense	novelGene_SIRV6002A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCTCTTGTTTACCTCT	NA	False	NA	NA	False	NA	NA	NA	2399	1546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV6002_-_1500_2400
62839	chr11	-	1915	9	ISM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	-25	5981	-25	1851	5prime_fragment	FALSE	canonical	3	53	junction_7	16.7663166795811	48	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAATTCGAAAGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	116089896	116068694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
62840	chr17	-	1528	8	FSM	ENSMUSG00000023806.11	ENSMUST00000024572.10	1614	8	69	17	-6	-17	multi-exon	TRUE	canonical	2	7	junction_1	24.1119836409624	93	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTTTTCATTTATTTAAC	NA	False	NA	NA	False	NA	NA	NA	7215686	7172131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676_7178823_7181355_7181498_7209067_7209156_7215376
62841	chr9	-	1252	3	NIC	ENSMUSG00000097195.11	novel	1408	4	NA	NA	0	-3	intron_retention	FALSE	canonical	3	461	junction_1	364.5	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATTCAATTGCAAATAT	NA	False	NA	NA	False	NA	NA	NA	88404944	88403121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88403502_88403970_88404435_88404536
62842	chr13	+	578	1	NIC	ENSMUSG00000025868.7	novel	648	2	NA	NA	362	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGATGAACTATTTCT	6340	False	NA	NA	False	NA	NA	NA	54738381	54738959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_54738400_54739000
62843	chr7	-	1179	8	Antisense	novelGene_ENSMUSG00000025503.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAACAGCTGAGGCGGTAGC	NA	False	NA	NA	False	NA	NA	NA	140982862	140972125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_140972232_140975975_140976078_140978397_140978514_140980198_140980331_140981491_140981667_140981787_140981982_140982095_140982237_140982649
62845	chr7	+	1697	14	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-13	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	826.32105455876	9	43	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTTTATGGATCCTCAT	22	False	NA	NA	False	NA	NA	NA	5065230	5082928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070643_5071030_5071079_5071125_5071177_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180_5082531_5082861
62846	chr5	+	1896	8	Antisense	novelGene_ENSMUSG00000105647.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	123	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGGACACGCCCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	32893908	32942970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_32894796_32895328_32895489_32895729_32895879_32896125_32896265_32896480_32896720_32922118_32922295_32931737_32931820_32942906
62847	chr3	-	1215	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	504	2	NA	NA	-10	-5	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	51	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTGCAAGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	41447637	41432016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
62850	chr5	+	1877	6	Intergenic	novelGene_808	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	180	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGGAGCAGACTTCCGC	NA	False	NA	NA	False	NA	NA	NA	110407025	110417734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110408304_110413377_110413509_110413605_110413692_110413773_110413901_110414950_110415138_110417666
62851	chr8	+	2731	2	ISM	ENSMUSG00000046794.10	ENSMUST00000211648.2	4386	3	857	1559	-45	-1554	3prime_fragment	FALSE	canonical	3	26	junction_1	0	1	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCATGTATCTCCTAGAT	NA	False	NA	NA	False	NA	NA	NA	35843768	35853729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_35843908_35851137
62853	chr13	-	822	2	Genic_Genomic	ENSMUSG00000049233.8	novel	586	1	NA	NA	-39	293	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATTG	NA	False	NA	NA	False	NA	NA	NA	107551268	107550350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_107550852_107550947
62854	chr7	-	682	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	7	592	7	-592	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	1055	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGGTGGTTCCTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	28092126	28086162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
62855	chr17	-	1555	1	FSM	ENSMUSG00000067370.5	ENSMUST00000087543.5	1580	1	27	-2	27	2	mono-exon	FALSE	NA	NA	NA	NA	NA	69	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAGCGTCTTCACCAGGC	NA	False	NA	NA	False	NA	NA	NA	34170435	34168880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34168900_34170400
62856	chr5	+	3224	8	ISM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	50731	24	998	-17	3prime_fragment	FALSE	canonical	3	32	junction_6	7.59430506285829	56	62	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGAGTTTTGTTGCTAAC	NA	False	NA	NA	False	NA	NA	NA	113689043	113727762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_113689396_113696409_113696525_113698961_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323_113715525_113725853
62857	chr2	+	680	1	ISM	ENSMUSG00000026648.19	ENSMUST00000061852.12	7075	16	39153	167	10335	-167	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGTATGTAGGTAGCAT	2695	False	NA	NA	False	NA	NA	NA	3464320	3465000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_3464300_3465000
62858	chr2	+	1450	4	FSM	ENSMUSG00000037262.8	ENSMUST00000142599.2	600	4	23	-873	-8	-114	multi-exon	FALSE	canonical	3	38	junction_2	6.16441400296898	3	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGTCATAACTGTTATT	4817	False	NA	NA	False	NA	NA	NA	10085426	10097503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_10085556_10090540_10090636_10094923_10095175_10096528
62859	chrX	-	418	2	Genic_Genomic	ENSMUSG00000083621.2	novel	408	1	NA	NA	-16	43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACTAATACCTCG	NA	False	NA	NA	False	NA	NA	NA	51861642	51861175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_51861414_51861462
62861	chr11	+	1397	3	NNC	ENSMUSG00000020397.16	novel	2547	3	NA	NA	33	56	intron_retention	FALSE	canonical	1	5	junction_1	265.5	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTGTACATGTGAAATTA	NA	False	NA	NA	False	NA	NA	NA	46327864	46332410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_46328071_46330632_46330803_46331389
62864	chr5	+	623	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	553	-174	553	174	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96010125	96010748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96010100_96010700
62865	chr1	-	1866	4	ISM	ENSMUSG00000034212.15	ENSMUST00000160548.8	3246	18	13854	14253	13854	-14253	internal_fragment	FALSE	canonical	1	2	junction_2	3.29983164553722	5	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCCTTCCCGAGTTGC	NA	False	NA	NA	False	NA	NA	NA	92816774	92812103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_92812988_92813857_92814017_92814344_92814562_92816168
62866	chr9	+	696	6	NNC	ENSMUSG00000032294.18	novel	743	6	NA	NA	-19	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7400.22546683545	4	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGTGTTGTGTTTT	1850	False	NA	NA	False	NA	NA	NA	59563836	59586648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576308_59586551
62869	chr7	-	861	1	FSM	ENSMUSG00000062758.7	ENSMUST00000085365.6	801	1	-18	-42	-18	42	mono-exon	FALSE	NA	NA	NA	NA	NA	1	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATCGCCAACTC	NA	False	NA	NA	False	NA	NA	NA	131216735	131215874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_131215900_131216700
62870	chr7	-	2551	1	FSM	ENSMUSG00000010755.18	ENSMUST00000207168.2	2213	1	30	-368	6	368	mono-exon	FALSE	NA	NA	NA	NA	NA	14	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCAGATTTTCCCCATAG	NA	False	NA	NA	False	NA	NA	NA	143153787	143151236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143151200_143153800
62871	chr17	-	885	8	NNC	ENSMUSG00000024099.16	novel	1697	8	NA	NA	-7	3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	1475.02774792302	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCTTTATTCGGTTTGCT	5495	False	NA	NA	False	NA	NA	NA	66408511	66386432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_66386583_66387805_66387914_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
62872	chr7	+	1508	5	FSM	ENSMUSG00000030876.8	ENSMUST00000033163.8	1823	5	315	0	315	0	multi-exon	FALSE	canonical	3	223	junction_4	46.4435140789325	124	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCACCATGTTCTTCT	9742	False	NA	NA	False	NA	NA	NA	120633982	120676058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675352
62873	chr12	-	1943	7	NNC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-23	6042	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	188.043213118687	1	105	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGGGCTGTGACCCACA	NA	False	NA	NA	False	NA	NA	NA	65219401	65189765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65190167_65195495_65196325_65200579_65200668_65201492_65201624_65203761_65203840_65205168_65205406_65219222
62874	chr19	-	2586	1	NIC	ENSMUSG00000040414.9	novel	1194	4	NA	NA	-412	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	76	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTGGGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	43654825	43652239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_43652200_43654800
62876	chr12	+	621	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	-27	-38	-27	38	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	67557502	67558123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_67557500_67558100
62877	chr15	-	1545	8	NIC	ENSMUSG00000022552.17	novel	1734	9	NA	NA	7	-5	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	47.1584389833563	8	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCAGCCTGTGTTCTGTT	8121	False	NA	NA	False	NA	NA	NA	76235303	76231245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234680
62878	chr5	-	1349	8	NNC	ENSMUSG00000029718.15	novel	1626	9	NA	NA	57	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	198.319881782448	14	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGGAAGGGATCGTG	4865	False	NA	NA	False	NA	NA	NA	137608907	137603377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607259_137608658
62879	chr2	-	988	6	NNC	ENSMUSG00000017307.17	novel	1152	6	NA	NA	35	0	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_2	128.143045070733	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8261	False	NA	NA	False	NA	NA	NA	164646707	164634687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164634931_164636904_164637031_164637571_164637730_164641639_164641866_164644916_164645054_164646609
62880	chrX	-	2086	14	NNC	ENSMUSG00000031310.17	novel	5564	25	NA	NA	1353	471	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	34.7847140474224	2	101	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTTTCCCAGGAACCC	NA	False	NA	NA	False	NA	NA	NA	100457172	100449113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100449410_100449510_100449626_100450810_100451066_100452082_100452198_100452759_100452903_100453238_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456741_100456884_100457094
62881	chr7	+	1730	9	ISM	ENSMUSG00000030796.18	ENSMUST00000097216.5	1948	11	1930	21	-767	-5	3prime_fragment	FALSE	canonical	3	317	junction_5	25.9121110679929	1	66	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTACCAAAAAAAAAAAAAAA	8818	False	NA	NA	False	NA	NA	NA	44868564	44883038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
62883	chr2	+	1788	4	Antisense	novelGene_ENSMUSG00000000876.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTCTCCGCACTGGAGA	1584	False	NA	NA	False	NA	NA	NA	154428664	154445614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154430013_154434084_154434284_154438121_154438185_154445436
62884	chr14	-	2414	2	ISM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	11048	13	4261	-13	3prime_fragment	FALSE	canonical	3	1036	junction_1	0	4	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTACTAGCATTTCATT	NA	False	NA	NA	False	NA	NA	NA	66060395	66056499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_66057548_66059029
62885	chr5	-	1935	9	ISM	ENSMUSG00000041890.18	ENSMUST00000155908.8	2338	18	-1	21421	-1	2961	5prime_fragment	FALSE	canonical	3	71	junction_1	61.3564126640403	10	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGTCTCTGTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	114911557	114889351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
62886	chr15	-	959	7	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	2	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	920.060686404254	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAATAATAAAACTTTAAT	NA	False	NA	NA	False	NA	NA	NA	51728848	51649988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651414_51653414_51653494_51661025_51661109_51662587_51662756_51705863_51706021_51728721
62887	chr14	-	422	1	Intergenic	novelGene_613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCATTTTTCATTCACA	NA	False	NA	NA	False	NA	NA	NA	75614918	75614496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_75614500_75614900
62888	chr1	-	1357	1	Antisense	novelGene_ENSMUSG00000042708.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAGCAAGCCAGTGTAT	NA	False	NA	NA	False	NA	NA	NA	153315611	153314254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_153314300_153315600
62890	chr16	-	1422	1	Intergenic	novelGene_3864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTTTTTTTAAGAT	NA	False	NA	NA	False	NA	NA	NA	93628400	93626978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_93627000_93628400
62891	chr4	+	1606	1	Antisense	novelGene_ENSMUSG00000064916.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGTGGATTTCTGAGTTC	484	False	NA	NA	False	NA	NA	NA	155803402	155805008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_155803400_155805000
62892	chr5	-	959	5	NNC	ENSMUSG00000029455.15	novel	623	5	NA	NA	-8	172	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	332.71562557235	99	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	121731653	121705768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710249_121731454
62893	chr5	-	3089	3	FSM	ENSMUSG00000039747.12	ENSMUST00000041048.6	3908	3	82	737	2	-732	multi-exon	FALSE	canonical	0	0	junction_2	1	7	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGAGTCCACTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	136199485	136177049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_136179807_136190340_136190579_136199391
62894	chr10	-	1158	1	Intergenic	novelGene_3512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGATGGCTCTCGGGAA	NA	False	NA	NA	False	NA	NA	NA	95148690	95147532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_95147500_95148700
62895	chr1	+	1006	8	NNC	ENSMUSG00000053332.14	novel	793	11	NA	NA	-247	0	intron_retention	FALSE	canonical	0	0	junction_1	2045.67926945291	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGAACTGTGAAGTGTGC	NA	False	NA	NA	False	NA	NA	NA	160863342	160866102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160863394_160863777_160864150_160864389_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
62898	chr3	-	656	1	Antisense	novelGene_ENSMUSG00000087260.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGGACTACATTCTCAAA	NA	False	NA	NA	False	NA	NA	NA	107191399	107190743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_107190700_107191400
62902	chr8	+	1407	6	FSM	ENSMUSG00000003812.14	ENSMUST00000003910.13	1715	6	133	175	3	-167	multi-exon	FALSE	canonical	3	65	junction_4	11.7711511756497	66	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGCCCGGCTCAGGTGG	NA	False	NA	NA	False	NA	NA	NA	85635321	85637923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
62903	chr7	+	830	6	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	89	junction_5	143.61615508013	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30008176	30013729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30013343
62904	chr4	+	1621	2	Antisense	novelGene_ENSMUSG00000051557.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGCTTGCACGTGGCCC	NA	False	NA	NA	False	NA	NA	NA	155974436	155976176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_155975699_155975817
62905	chr9	+	1482	5	NNC	ENSMUSG00000032249.15	novel	2113	7	NA	NA	21	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	237.680983673495	49	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATACAATTTTTTGGGAGA	NA	False	NA	NA	False	NA	NA	NA	62248631	62286076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280807_62285112
62906	chr16	+	1963	3	FSM	ENSMUSG00000022676.8	ENSMUST00000023356.8	2021	3	4	54	4	-54	multi-exon	FALSE	canonical	2	2	junction_2	2	16	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAGTAACTTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	14523719	14527195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_14523917_14524574_14525124_14525978
62908	chr3	+	1759	9	ISM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	109	5	109	-5	intron_retention	FALSE	canonical	3	56	junction_1	13.9977676791694	34	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACGTTGTGTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	104688480	104693329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713
62909	chr9	-	2387	1	Intergenic	novelGene_1057	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTTTTATGTAATTCTG	NA	False	NA	NA	False	NA	NA	NA	57409879	57407492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_57407500_57409900
62911	chr2	-	1009	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	22	-25	0	-22	multi-exon	FALSE	canonical	3	843	junction_1	0	143	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAAGGTTGTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	25162428	25161072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25161594_25161940
62912	chr7	+	1766	2	Antisense	novelGene_ENSMUSG00000030592.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAATAAATCAAATATATT	4940	False	NA	NA	False	NA	NA	NA	28740903	28742806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_28741897_28742033
62913	chr11	+	2067	8	Antisense	novelGene_ENSMUSG00000018537.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCACTCCACCAATGAGAG	6692	False	NA	NA	False	NA	NA	NA	97581018	97585003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_97581187_97581787_97581865_97582506_97582608_97582685_97582738_97582851_97582962_97583194_97583246_97583329_97583386_97583551
62914	chr16	-	1051	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	27	7	27	-7	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	2	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGACCAGCTGACAAGG	7160	False	NA	NA	False	NA	NA	NA	18066569	18057654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
62915	chr2	-	900	2	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1771	-2	multi-exon	FALSE	canonical	3	698	junction_1	0	1934	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTCCGGGCTGTGCTGGTT	898	False	NA	NA	False	NA	NA	NA	162931546	162928955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_162929768_162931458
62916	chr4	-	1201	4	ISM	ENSMUSG00000029022.19	ENSMUST00000156374.9	1909	9	5362	29	-355	-29	intron_retention	FALSE	canonical	3	248	junction_1	19.6185852927495	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGTGCTAATAAAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	147947594	147945276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894
62917	chr13	-	1716	6	FSM	ENSMUSG00000006191.18	ENSMUST00000129231.2	694	6	15	-1037	-3	1037	multi-exon	FALSE	canonical	3	9	junction_1	95.4136258612993	33	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGTATAGAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	30039633	30019940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_30021054_30022497_30022686_30030210_30030324_30033921_30034092_30038880_30038925_30039545
62919	chr18	+	1572	5	Antisense	novelGene_ENSMUSG00000024487.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGACATTGCCAACGATC	5244	False	NA	NA	False	NA	NA	NA	40338481	40351899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_40339456_40340740_40340921_40343799_40343955_40345107_40345271_40351799
62920	chr1	+	1858	6	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	48	-41	combination_of_known_splicesites	FALSE	canonical	2	4	junction_5	30.1396748489429	1	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAGATCTTTTTAAATTT	NA	False	NA	NA	False	NA	NA	NA	136343056	136367855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136360049_136360302_136361450_136361604_136367490
62921	chr4	-	1179	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	366	329	14	7	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	2	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTCATTGATTGGGGG	8955	False	NA	NA	False	NA	NA	NA	43031344	43028018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
62922	chr11	+	778	4	NIC	ENSMUSG00000086841.2	novel	462	5	NA	NA	0	2	intron_retention	FALSE	canonical	3	3662	junction_1	454.557904879993	137	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAGTGTTTTGGATGAA	NA	False	NA	NA	False	NA	NA	NA	62493702	62495635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62493850_62494060_62494473_62495228_62495293_62495480
62923	chr4	-	826	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-16	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9098.38236652538	4	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATCTTTCATTGGCTTTC	NA	False	NA	NA	False	NA	NA	NA	86775607	86772907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86773193_86774103_86774252_86774382_86774594_86774964_86775097_86775557
62925	chr5	-	1724	1	ISM	ENSMUSG00000037979.14	ENSMUST00000036206.14	2473	4	26272	11	15431	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	71	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAAAACTAGATGTG	NA	False	NA	NA	False	NA	NA	NA	124913216	124911492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_124911500_124913200
62926	chr2	+	1017	6	Antisense	novelGene_ENSMUSG00000078868.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGTCACCAGAGTTACAG	NA	False	NA	NA	False	NA	NA	NA	176992696	177021609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_176993158_176999280_176999484_177007617_177007702_177008855_177008916_177009122_177009251_177021528
62927	chr16	-	1723	3	ISM	ENSMUSG00000022805.18	ENSMUST00000023501.16	3048	17	17666	21439	17335	2988	internal_fragment	FALSE	canonical	2	3	junction_1	1	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACACACACCCATACACA	NA	False	NA	NA	False	NA	NA	NA	38144839	38139554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_38140754_38141732_38141916_38144498
62929	chr12	+	1944	14	ISM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	35	60912	35	-60238	5prime_fragment	FALSE	canonical	3	35	junction_9	16.0461612213273	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATATTGAACTTGTGT	NA	False	NA	NA	False	NA	NA	NA	78273461	78670629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077
62930	chr7	-	1894	1	ISM	ENSMUSG00000048528.8	ENSMUST00000054562.4	3264	2	2862	4	2862	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	32	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATTTTTGACGAATTAT	NA	False	NA	NA	False	NA	NA	NA	132198504	132196610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_132196600_132198500
62934	chr3	+	2303	11	ISM	ENSMUSG00000032657.16	ENSMUST00000127982.8	2802	12	599	6	-50	-4	3prime_fragment	FALSE	canonical	3	16	junction_4	4.22018956920184	24	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTCTCTTTGGAGTATT	2699	False	NA	NA	False	NA	NA	NA	89091485	89096591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092740_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
62935	chrX	+	1958	12	NIC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	6	-1961	combination_of_known_splicesites	FALSE	canonical	3	4	junction_3	101.57601070338	9	39	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTATGCTCTGCTTGAC	NA	False	NA	NA	False	NA	NA	NA	70258650	70351956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_70258689_70274996_70275068_70276677_70276751_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305
62936	chr2	+	820	1	Intergenic	novelGene_2649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAACAACAAGAAATAAACA	1990	False	NA	NA	False	NA	NA	NA	71350515	71351335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_71350500_71351300
62937	chr4	-	1379	3	Antisense	novelGene_ENSMUSG00000073684.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	171	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGACCCCACCCTTCCGCT	4612	False	NA	NA	False	NA	NA	NA	155341135	155334553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_155335105_155335209_155335494_155340591
62938	chr1	-	831	1	FSM	ENSMUSG00000089782.2	ENSMUST00000162698.2	489	1	-97	-245	-97	245	mono-exon	FALSE	NA	NA	NA	NA	NA	5	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAATGTAA	8446	False	NA	NA	False	NA	NA	NA	97877211	97876380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_97876400_97877200
62939	chr4	+	2387	4	FSM	ENSMUSG00000036052.15	ENSMUST00000098112.9	3093	4	7	699	7	3	multi-exon	FALSE	canonical	3	21	junction_3	4.32049379893857	34	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATAGCCTCTGCGCAGAA	-19	True	NA	NA	False	NA	NA	NA	42949873	42958726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_42950005_42953140_42953386_42956525_42957128_42957317
62940	chrX	+	3491	4	NNC	ENSMUSG00000084885.8	novel	876	4	NA	NA	-23583	-17481	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	34	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAGAGGGGGAGGGGTG	7104	False	NA	NA	False	NA	NA	NA	151127985	151151715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_151130568_151150115_151150266_151150416_151150507_151151046
62943	chr2	+	1349	2	FSM	ENSMUSG00000068264.12	ENSMUST00000134086.2	868	2	31	-512	4	0	multi-exon	FALSE	canonical	3	35	junction_1	0	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	NA	False	NA	NA	NA	131052320	131055434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131052602_131054366
62945	chr14	+	1919	12	FSM	ENSMUSG00000021950.16	ENSMUST00000022519.15	1880	12	-45	6	-45	-6	multi-exon	FALSE	canonical	2	6	junction_2	1.55345522642137	37	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAAGTGTCTGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	33807892	33822522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_33808034_33811467_33811559_33812563_33812659_33813757_33813872_33814486_33814578_33815334_33815415_33815840_33815901_33816354_33816449_33816679_33816776_33818486_33818546_33819813_33819937_33821647
62947	chr5	-	1826	9	NIC	ENSMUSG00000029490.5	novel	2717	10	NA	NA	-19	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1.40867845869808	8	19	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGTTTGTGTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	108596785	108589470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_108590128_108590889_108591000_108591304_108591463_108591720_108591874_108592336_108592454_108592537_108592676_108593071_108593149_108593316_108593531_108596583
62948	chr5	-	1127	2	ISM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	49	1	49	-1	3prime_fragment	FALSE	canonical	3	220	junction_1	0	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGCTGGCCTTCTCAGT	7404	False	NA	NA	False	NA	NA	NA	139812549	139809368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_139809829_139811882
62949	chr10	+	694	5	NIC	ENSMUSG00000019808.9	novel	1466	6	NA	NA	326	-341	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_2	320.31576217851	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGTGAGCTCTTCCACC	NA	False	NA	NA	False	NA	NA	NA	13428963	13438779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_13429106_13435857_13436009_13437447_13437555_13438380_13438454_13438558
62950	chr6	+	1032	1	FSM	ENSMUSG00000097994.2	ENSMUST00000182250.2	1151	1	82	37	82	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTTACCATATAGATGAAA	1022	False	NA	NA	False	NA	NA	NA	113692013	113693045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113692000_113693000
62951	chr6	+	2674	1	FSM	ENSMUSG00000108154.2	ENSMUST00000203699.2	695	1	-2187	208	-2187	-208	mono-exon	FALSE	NA	NA	NA	NA	NA	3	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTGTTATAAGAACATG	2366	False	NA	NA	False	NA	NA	NA	113693357	113696031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113693400_113696000
62952	chr13	-	1961	7	Antisense	novelGene_ENSMUSG00000021608.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTAAAGTTGAAAGGTTAA	NA	False	NA	NA	False	NA	NA	NA	73663637	73651022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_73651215_73653620_73653704_73658114_73658240_73658965_73659119_73659416_73659516_73661936_73662080_73662471
62954	chr13	+	1075	6	Genic_Genomic	ENSMUSG00000097752.3_ENSMUSG00000114936.2	novel	1568	3	NA	NA	-3815	-1295	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGGGGAGGAGGAGGTG	NA	False	NA	NA	False	NA	NA	NA	40872770	40887343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_40872809_40874743_40874866_40876568_40876798_40878603_40878657_40881817_40882252_40887144
62955	chr4	-	763	1	Intergenic	novelGene_2177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	153639536	153638773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_153638800_153639500
62957	chr2	-	1081	11	NNC	ENSMUSG00000034278.4	novel	450	5	NA	NA	-45	-2430	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	123.678615774919	6	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGCTCAGCAGCAGCAGG	NA	False	NA	NA	False	NA	NA	NA	119039321	119005410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119005623_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011447_119014073_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
62958	chr17	-	2750	2	Genic_Genomic	ENSMUSG00000024248.15	novel	1076	3	NA	NA	1	-9111	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAGAATATTATGTCTGT	9948	False	NA	NA	False	NA	NA	NA	83821758	83818869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_83821142_83821280
62959	chrX	+	587	4	NNC	ENSMUSG00000031231.5	novel	1001	3	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	4409.17596231616	46	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTAGGCTTTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	105059344	105065563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105059477_105059710_105059829_105063184_105063310_105065351
62962	chr1	-	1263	5	NNC	ENSMUSG00000042111.10	novel	1705	5	NA	NA	300	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.501082246012	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCACAGAGCTCTCATTT	7504	False	NA	NA	False	NA	NA	NA	34478453	34475756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_34476583_34476834_34476940_34477930_34478014_34478123_34478228_34478308
62963	chr1	+	1796	1	Intergenic	novelGene_388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAACTTGAGTATCTATAT	NA	False	NA	NA	False	NA	NA	NA	72805291	72807087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_72805300_72807100
62964	chr17	-	1231	2	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	4269	0	4236	0	3prime_fragment	FALSE	canonical	3	161	junction_1	0	342	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	24859695	24858259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24859364_24859568
62965	chrX	+	771	6	NNC	ENSMUSG00000002014.13	novel	765	6	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	608.060523303396	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5412	False	NA	NA	False	NA	NA	NA	72830613	72834432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72830913_72832491_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
62966	chr10	-	2779	1	Intergenic	novelGene_3389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGATGCTCTTTCTA	8537	False	NA	NA	False	NA	NA	NA	8714998	8712219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_8712200_8715000
62968	chr17	-	1281	1	Intergenic	novelGene_126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTGCTAGACAGATTCC	NA	False	NA	NA	False	NA	NA	NA	32056464	32055183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_32055200_32056500
62969	chr15	-	1055	1	Intergenic	novelGene_3318	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTGGTTGAGTGCTCC	NA	False	NA	NA	False	NA	NA	NA	78047866	78046811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_78046800_78047900
62971	chr4	+	1254	6	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	17	-510	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	190.07156546943	1	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTATCCGAGTGCTTCCT	NA	False	NA	NA	False	NA	NA	NA	132857867	132923305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132912958_132921769_132922219_132923027
62973	chr9	+	922	6	NIC	ENSMUSG00000033543.18	novel	833	7	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	366.992098007573	64	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTGTGAGTAATACTTG	NA	False	NA	NA	False	NA	NA	NA	69919841	69930017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924206_69926670_69926798_69929718
62974	chr11	+	2672	4	ISM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	4367	25	4367	-25	3prime_fragment	FALSE	canonical	3	47	junction_2	3.29983164553722	48	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTAGCTTCTCTGCAAAGC	3355	False	NA	NA	False	NA	NA	NA	101320277	101326474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101320437_101322173_101322373_101322907_101323025_101324277
62975	chr3	-	635	1	Intergenic	novelGene_3134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTCCTAGCTCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	68398016	68397381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_68397400_68398000
62976	chr3	-	1495	1	Intergenic	novelGene_3133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTCACCAAGAATCAATA	NA	False	NA	NA	False	NA	NA	NA	68396376	68394881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_68394900_68396400
62977	chr6	-	2400	7	NIC	ENSMUSG00000029735.18	novel	2671	9	NA	NA	-22	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	20.1886932051912	1	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCAGATAGCAATGCTGT	NA	False	NA	NA	False	NA	NA	NA	43643131	43321940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_43323835_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43642693_43642752_43643069
62978	chr10	-	1378	2	ISM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	-69	12	31	-9	intron_retention	FALSE	canonical	3	15147	junction_1	0	68	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACTTTACATGGCATCG	NA	False	NA	NA	False	NA	NA	NA	128462362	128460414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128460506_128461075
62979	chr1	+	374	2	Genic_Genomic	ENSMUSG00000058603.11	novel	414	1	NA	NA	-49	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCCCACACGCCCGAAGC	NA	False	NA	NA	False	NA	NA	NA	127966256	127966717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_127966547_127966633
62980	chr17	+	1368	13	FSM	ENSMUSG00000024253.10	ENSMUST00000025101.10	1354	13	-19	5	-19	-5	multi-exon	FALSE	canonical	3	61	junction_6	7.6412622575651	369	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGCAACATCTAAGTATAA	NA	False	NA	NA	False	NA	NA	NA	84933904	84963011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950299_84950487_84951532_84951602_84952146_84952225_84954672_84954750_84955073_84955145_84956643_84956742_84957136_84957230_84962728
62981	chr16	-	2878	8	NNC	ENSMUSG00000022498.17	novel	4248	8	NA	NA	6	826	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	37.2668260860864	2	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCTGTTTTATGTATAT	8540	False	NA	NA	False	NA	NA	NA	10952508	10904272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_10906434_10909449_10909651_10911679_10911793_10922429_10922524_10934658_10934789_10940533_10940632_10946350_10946405_10952481
62983	chr3	+	953	2	Genic_Genomic	ENSMUSG00000039617.9	novel	684	1	NA	NA	-116	278	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGAGGATCCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	21103612	21104690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_21103966_21104090
62984	chr15	+	1299	11	NNC	ENSMUSG00000056851.15	novel	3222	14	NA	NA	-38	42	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	163.174875517035	2	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTACGTGGGTGTTGT	6048	False	NA	NA	False	NA	NA	NA	102383012	102407358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102383127_102387050_102387180_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399256_102406996
62985	chr5	-	2010	8	ISM	ENSMUSG00000057541.15	ENSMUST00000131992.8	3645	16	27275	7	-2171	-7	3prime_fragment	FALSE	canonical	3	355	junction_3	20.3028096979865	7	31	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTCTAAAACTGAGTGCA	NA	False	NA	NA	False	NA	NA	NA	23957281	23945660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259
62986	chr2	-	846	3	FSM	ENSMUSG00000026966.7	ENSMUST00000028342.7	862	3	-1	17	-1	-17	multi-exon	FALSE	canonical	3	707	junction_2	68	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTTGTTTTGCAAGATCT	NA	False	NA	NA	False	NA	NA	NA	25162429	25161067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25161594_25161940_25162141_25162309
62987	SIRV4	+	1568	3	FSM	SIRV4C	SIRV409	1567	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	2151	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	999	3403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4_+_1347_1678_1886_2389
62988	chr19	-	2721	18	NIC	ENSMUSG00000040929.18	novel	2621	19	NA	NA	-13	59	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	3.2899132833199	20	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAATAGAGCCCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	27988579	27745658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_27746094_27748028_27748072_27764013_27764168_27771010_27771220_27777516_27777667_27779781_27779880_27783587_27783743_27784192_27784309_27790977_27791091_27792884_27793007_27803432_27803553_27808010_27808193_27814806_27814882_27827110_27827370_27844912_27845011_27878178_27878304_27900607_27900667_27988371
62989	chr9	+	1020	1	ISM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	10127	444	9856	-444	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTTAAAAATTAAGACAGGG	NA	False	NA	NA	False	NA	NA	NA	44963849	44964869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_44963800_44964900
62990	chr2	+	900	6	NNC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	685.649006416548	56	3	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	NA	False	NA	NA	NA	151336205	151353225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151336333_151338503_151338602_151342634_151342710_151344928_151345100_151346030_151346097_151352862
62991	chr17	-	3024	3	Antisense	novelGene_ENSMUSG00000117452.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGACCTCACTGCTCT	NA	False	NA	NA	False	NA	NA	NA	93648274	93629142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_93629345_93641314_93641482_93645619
62992	chr7	+	2686	5	Intergenic	novelGene_2867	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGAGAAGGTCACCGCC	NA	False	NA	NA	False	NA	NA	NA	3504817	3523209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_3506426_3513949_3514044_3515259_3515866_3521323_3521605_3523112
62993	chr13	-	504	2	FSM	ENSMUSG00000037960.12	ENSMUST00000223496.2	685	2	177	4	177	-3	multi-exon	FALSE	canonical	3	377	junction_1	0	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACCTGCCTGTCGAATGT	NA	False	NA	NA	False	NA	NA	NA	49357415	49356429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_49356712_49357193
62994	chr5	-	2744	8	FSM	ENSMUSG00000029127.16	ENSMUST00000094833.10	2978	8	26	208	0	-39	multi-exon	FALSE	canonical	3	18	junction_5	10.0772526220277	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAATTTAATTTGAATAA	NA	False	NA	NA	False	NA	NA	NA	38377775	38357631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38370651_38371728_38373790_38373958_38377666
62998	chr10	+	2138	15	NNC	ENSMUSG00000032763.12	novel	2233	15	NA	NA	26	3	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_3	44.8967068470983	1	67	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGACTCAGTCACAGAAT	5948	False	NA	NA	False	NA	NA	NA	78410882	78420317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_78411066_78412415_78412618_78412733_78412862_78412988_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
62999	chr9	+	1426	12	NIC	ENSMUSG00000002031.14	novel	229	4	NA	NA	-50	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	56.1612201134208	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTCTGGCTCATTAGTG	NA	False	NA	NA	False	NA	NA	NA	44684509	44702190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44684585_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
63000	chr15	+	1012	3	NNC	ENSMUSG00000037204.8	novel	1270	3	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	232.5	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8059	False	NA	NA	False	NA	NA	NA	101182181	101188826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101182423_101185038_101185132_101188148
63002	chr19	-	1251	7	NIC	ENSMUSG00000036748.17	novel	1833	9	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	390	junction_6	246.29888121729	2	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAGGTATATGCTCATT	5820	False	NA	NA	False	NA	NA	NA	46327101	46318988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46319274_46319358_46319553_46319728_46319906_46319984_46320258_46320351_46320496_46321056_46321141_46327007
63003	chr9	-	1063	1	Intergenic	novelGene_991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGTCTCAGGGGTGGGG	NA	False	NA	NA	False	NA	NA	NA	15190568	15189505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_15189500_15190600
63004	chr17	+	2337	1	Genic_Genomic	ENSMUSG00000042099.17	novel	NA	NA	NA	NA	-18	-9118	mono-exon	FALSE	NA	NA	NA	NA	NA	10	51	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCCAAACCATCCAAATTA	NA	False	NA	NA	False	NA	NA	NA	34029474	34031811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_34029500_34031800
63005	chr7	+	1364	8	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	23	303	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	197.148757675673	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAAGCAAGCTCAATGTT	NA	False	NA	NA	False	NA	NA	NA	100142615	100148812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100142673_100143420_100143583_100145951_100146156_100146301_100146513_100147284_100147480_100147554_100147627_100148030_100148124_100148442
63006	chr11	+	995	1	FSM	ENSMUSG00000064437.4	ENSMUST00000082503.4	72	1	-202	-721	-202	721	mono-exon	FALSE	NA	NA	NA	NA	NA	29	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGGATGGTTGTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	62493702	62494697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62493700_62494700
63009	chr11	+	2398	18	ISM	ENSMUSG00000020694.18	ENSMUST00000015107.13	3212	21	2294	5708	1994	9	internal_fragment	FALSE	canonical	3	73	junction_4	63.1306110254202	24	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATACTGTGTGCTCGTGT	NA	False	NA	NA	False	NA	NA	NA	105075036	105167294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_105075121_105098205_105098278_105099677_105099748_105100619_105100664_105112011_105112180_105131186_105131283_105132394_105132488_105137599_105137711_105138284_105138422_105140310_105140464_105144116_105144184_105145791_105145890_105147695_105147778_105151086_105151179_105157978_105158069_105160451_105160622_105161924_105162064_105166662
63010	chrX	-	1811	2	FSM	ENSMUSG00000073294.5	ENSMUST00000101698.4	1838	2	22	5	22	-5	multi-exon	FALSE	canonical	3	19	junction_1	0	48	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTAGTCTCTTTGTTGTGG	NA	False	NA	NA	False	NA	NA	NA	5995451	5993277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_5994830_5995192
63011	chr6	+	2044	12	NIC	ENSMUSG00000058440.15	novel	2491	12	NA	NA	13	-151	combination_of_known_junctions	FALSE	canonical	2	18	junction_11	143.761223061709	1	89	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTGTTTTAAATCTGG	-1	True	NA	NA	False	NA	NA	NA	30048013	30129608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30129179
63012	chr9	+	4281	6	Antisense	novelGene_ENSMUSG00000032440.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTGAGGAGAGAGAAAGAAA	8293	False	NA	NA	False	NA	NA	NA	115916777	115960780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_115919626_115922010_115922144_115934103_115934242_115938569_115939377_115958887_115959074_115960611
63013	chr9	+	1413	3	ISM	ENSMUSG00000032482.10	ENSMUST00000199736.2	2107	4	143	6390	143	-6378	5prime_fragment	FALSE	canonical	3	43	junction_2	7.5	11	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTCCACCATTGCCGAG	NA	False	NA	NA	False	NA	NA	NA	110075275	110085253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110076459_110080026_110080216_110085212
63014	chr9	+	469	1	ISM	ENSMUSG00000032482.10	ENSMUST00000035058.10	3870	5	18310	14	16028	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAAGCTGTCCACTTCC	8517	False	NA	NA	False	NA	NA	NA	110091160	110091629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110091200_110091600
63015	chr17	-	2581	2	NNC	ENSMUSG00000050824.13	novel	2506	2	NA	NA	-16963	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	11	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACGTTCTTTTCCAAAGC	NA	False	NA	NA	False	NA	NA	NA	25733225	25708850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25711263_25733056
63016	chr9	-	548	4	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5151.32722919271	165	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCTGTGTTGGTCAATG	7153	False	NA	NA	False	NA	NA	NA	78388953	78385738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386037_78387663_78387703_78387792_78387971_78388920
63017	chr10	+	813	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	8	-221	7	-2	multi-exon	FALSE	canonical	0	0	junction_1	357	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTCTCACTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	127126669	127132155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127126761_127131189_127131348_127131591
63018	chr16	+	830	8	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2087.74785403813	1	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	NA	False	NA	NA	False	NA	NA	NA	84571303	84619774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84612056_84612153_84613153_84613285_84618147_84618183_84619674
63019	chr10	+	919	7	FSM	ENSMUSG00000020056.17	ENSMUST00000020248.16	1052	7	21	112	21	39	multi-exon	FALSE	canonical	3	318	junction_4	34.2377309736236	120	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAACAACATAAATTGCTA	NA	False	NA	NA	False	NA	NA	NA	88036975	88081908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
63021	chr11	+	977	3	NIC	ENSMUSG00000086841.2	novel	462	5	NA	NA	0	-10	intron_retention	FALSE	canonical	3	3941	junction_2	397	117	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAACCAGATTGCCAGT	NA	False	NA	NA	False	NA	NA	NA	62493702	62495623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62494473_62495228_62495293_62495480
63022	chr19	-	1258	8	NNC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	323.807640050543	16	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATGACTGGAAAAAATTC	NA	False	NA	NA	False	NA	NA	NA	41921742	41912007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921251_41921604_41921690
63023	chr2	+	1938	3	FSM	ENSMUSG00000027245.12	ENSMUST00000131870.2	724	3	-1210	-4	-779	4	multi-exon	FALSE	canonical	3	4570	junction_2	83	31	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTCTTCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	121286394	121288791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121287773_121288126_121288525_121288629
63024	chr9	-	2333	11	NNC	ENSMUSG00000023249.16	novel	2495	11	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	2.9	22	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCTGTCCGACTGAAT	NA	False	NA	NA	False	NA	NA	NA	106353820	106347825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351720_106351878_106352068_106352221_106352348_106352997_106353182_106353687
63025	chr9	-	1291	3	ISM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	34	4737	22	547	5prime_fragment	FALSE	canonical	3	120	junction_1	7.5	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGGGCAGGCTGAGCA	NA	False	NA	NA	False	NA	NA	NA	100428153	100379082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_100380024_100390481_100390726_100428047
63026	chr13	+	1741	9	ISM	ENSMUSG00000021669.16	ENSMUST00000077672.12	2746	18	73743	-462	-12577	-3	3prime_fragment	FALSE	canonical	3	25	junction_2	13.1190462686889	6	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAATCAGACTGTTTGAA	4653	False	NA	NA	False	NA	NA	NA	96752985	96774520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_96753058_96753501_96753580_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
63027	chr15	-	1820	17	NNC	ENSMUSG00000034022.9	novel	4518	37	NA	NA	-43	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	217.834799791034	1	79	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGATTTCTTTCAGACGA	NA	False	NA	NA	False	NA	NA	NA	76487843	76480022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76480133_76480208_76480348_76480419_76480527_76485130_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485822_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486648_76486724_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711
63028	chr3	+	632	4	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2076.23896077071	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGATGTGTTTGTCTTGC	3589	False	NA	NA	False	NA	NA	NA	88486946	88495721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488294_88495304
63029	chr6	+	1005	2	FSM	ENSMUSG00000042505.7	ENSMUST00000040826.6	4323	2	0	3318	0	-3318	multi-exon	FALSE	canonical	0	0	junction_1	0	494	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGTTGGGTGACCTA	-18	True	NA	NA	False	NA	NA	NA	6956003	7039661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_6956201_7038853
63030	chr2	+	1315	2	Intergenic	novelGene_2671	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	66	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGAGCTAGGAACCTCTGT	NA	False	NA	NA	False	NA	NA	NA	93756696	93759534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_93756773_93758295
63031	chr6	-	2463	1	Antisense	novelGene_ENSMUSG00000029863.14_AS_novelGene_ENSMUSG00002075822.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTTAAGTCCCCACTGC	NA	False	NA	NA	False	NA	NA	NA	42253597	42251134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_42251100_42253600
63032	chr7	-	1152	6	FSM	ENSMUSG00000089832.9	ENSMUST00000148933.8	1140	6	-9	-3	-9	-2	multi-exon	FALSE	canonical	3	25	junction_5	134.483604948707	93	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTATAGTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	27045036	27041559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27044841
63033	chr19	-	1193	3	FSM	ENSMUSG00000079478.10	ENSMUST00000159008.2	610	3	-10	-573	-10	-12	multi-exon	FALSE	canonical	3	466	junction_1	5	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTCCTCCGCGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	5781737	5780346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5781354_5781471_5781624_5781703
63034	chr3	+	1572	10	FSM	ENSMUSG00000033860.14	ENSMUST00000048486.13	1695	10	113	10	-24	-10	multi-exon	FALSE	canonical	3	22	junction_4	1.8324913891634	51	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTCCTAAGATGAGACAT	NA	False	NA	NA	False	NA	NA	NA	82915143	82922346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444_82921615_82922141
63035	chr11	+	1403	1	Intergenic	novelGene_2384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTTAGATTACACATTAGA	NA	False	NA	NA	False	NA	NA	NA	65027562	65028965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_65027600_65029000
63036	chr17	-	560	4	Antisense	novelGene_ENSMUSG00000000579.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	264	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGCAGGCGCGGCCAG	NA	False	NA	NA	False	NA	NA	NA	6875299	6869173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_6869234_6870883_6870926_6874008_6874135_6874967
63037	chr2	-	1470	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110801.8	1478	5	4	4	-4	1	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	818	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACCCTCAGCCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	119493297	119485930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
63038	chr8	-	1804	8	NIC	ENSMUSG00000002910.12	novel	2355	8	NA	NA	1	-8	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	46.3121617561803	61	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGACACTGGGCCGTC	NA	False	NA	NA	False	NA	NA	NA	71292303	71287782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622_71291690_71292251
63039	chr15	+	905	3	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-24	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	689	1	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACCTATGTGGGTTTTCAG	4460	False	NA	NA	False	NA	NA	NA	80139699	80141739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80139887_80140407_80140497_80141110
63040	chr4	-	2229	18	Intergenic	novelGene_1869	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	25	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGCCAGTCCCTGATTGGC	NA	False	NA	NA	False	NA	NA	NA	62608101	62501710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_62501950_62521156_62521209_62523724_62523780_62524739_62524839_62525845_62525911_62533533_62533597_62534708_62534800_62535309_62535366_62542079_62542163_62543333_62543439_62543977_62544328_62544725_62544767_62549358_62549555_62552679_62552774_62558958_62559065_62564919_62564963_62570948_62571072_62607733
63041	chr7	-	1247	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	47	819	-3	-819	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	983	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTCAAATTCCTGTACT	NA	False	NA	NA	False	NA	NA	NA	37970800	37962238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
63042	chr17	+	2289	16	Antisense	novelGene_ENSMUSG00000003546.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGCCGCTCGAGGCAAT	NA	False	NA	NA	False	NA	NA	NA	46941582	46956957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_46942005_46942759_46942818_46942958_46943074_46943674_46943820_46946339_46946445_46946657_46946729_46946901_46946955_46947118_46947223_46947548_46947718_46947836_46947939_46950318_46950408_46950815_46951037_46951548_46951630_46953038_46953275_46955177_46955445_46956906
63043	chr5	+	1424	9	Antisense	novelGene_ENSMUSG00000040013.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGAAGTCAGGCACCACGC	NA	False	NA	NA	False	NA	NA	NA	135320569	135378887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135320965_135366467_135366564_135368333_135368444_135368777_135368970_135373501_135373622_135374942_135375147_135376730_135376821_135378471_135378593_135378791
63044	chr12	+	1550	5	NNC	ENSMUSG00000036188.5	novel	4329	8	NA	NA	19506	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	74.2428447730823	2	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACCTACATGCACAGTTC	NA	False	NA	NA	False	NA	NA	NA	36236830	36247271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246225
63045	chr17	-	1382	3	Fusion	ENSMUSG00000033475.16_ENSMUSG00000096549.10	novel	1037	2	NA	NA	-503	-5	intron_retention	FALSE	non_canonical	0	0	junction_2	2243	168	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGACAGGTATTTTATT	NA	False	NA	NA	False	NA	NA	NA	47999814	47997669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_47998214_47998823_47999142_47999294
63047	chr11	-	1040	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	46	2580	12	-89	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGCTCCTCCTCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	70910083	70900847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
63049	chr9	+	954	6	NNC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	-3	42	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	749.691296468086	43	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGCCCCGGATGCTCTC	NA	False	NA	NA	False	NA	NA	NA	54493761	54511271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54510833
63050	chr8	+	1407	1	ISM	ENSMUSG00000055675.7	ENSMUST00000069399.7	6973	2	19414	1488	-1951	-1119	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGGACCCAGTCAGGAA	2717	False	NA	NA	False	NA	NA	NA	15080438	15081845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_15080400_15081800
63051	chr11	-	867	4	NNC	ENSMUSG00000051355.19	novel	4508	3	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	1024.12705374979	232	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGTAAAAAAGAGAAACC	NA	False	NA	NA	False	NA	NA	NA	22932284	22849758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_22850058_22906152_22906233_22906410_22906693_22932078
63054	chr3	-	319	1	Intergenic	novelGene_3078	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCTCCTGACTCCCTCTT	NA	False	NA	NA	False	NA	NA	NA	9530983	9530664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_9530700_9531000
63055	chr9	-	1739	11	FSM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	-32	-1	-6	1	multi-exon	FALSE	canonical	3	12	junction_6	5.23545604508337	92	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGAGTGTGCTTCTTGG	1313	False	NA	NA	False	NA	NA	NA	21223639	21206755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214062_21216577_21216705_21216788_21217068_21220662_21220731_21220931_21221089_21223502
63056	chr17	+	1131	7	NNC	ENSMUSG00000024191.16	novel	1087	7	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	43.4383343245213	36	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAGAGTGGTAAATGCT	2025	False	NA	NA	False	NA	NA	NA	27000070	27011491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27008938_27009007_27009899_27010019_27010914
63059	chr11	+	939	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	26	-247	10	1	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	2663	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAGCTTCAGACCTCTG	NA	False	NA	NA	False	NA	NA	NA	59093340	59096961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
63060	chr5	+	962	4	NNC	ENSMUSG00000029462.19	novel	2716	4	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	879.857185381052	5	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTAGACTTTCTTGAAAA	702	False	NA	NA	False	NA	NA	NA	122492454	122501344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122492540_122498075_122498256_122500114_122500335_122500867
63061	chr4	-	735	2	Intergenic	novelGene_1941	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTACGCAGTAGGTCTGG	NA	False	NA	NA	False	NA	NA	NA	123763682	123762876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_123763465_123763535
63062	chr2	+	2300	3	Genic_Genomic	ENSMUSG00000052368.3	novel	1361	1	NA	NA	-13982	-78	multi-exon	FALSE	non_canonical	0	0	junction_2	8.5	1	60	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGTATGAATGTGGTC	NA	False	NA	NA	False	NA	NA	NA	168847962	168863208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_168848074_168860968_168861471_168861521
63063	chr2	-	1088	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	78	0	-5	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	1	60	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9582	False	NA	NA	False	NA	NA	NA	10085243	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
63064	chr12	+	831	3	ISM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	65	401	34	-8	intron_retention	FALSE	canonical	3	1147	junction_1	22	28	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTGTCTTCTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	4867608	4877258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_4867820_4870593_4870713_4876757
63065	chr7	+	1148	8	FSM	ENSMUSG00000030613.14	ENSMUST00000085017.5	1494	8	346	0	346	0	multi-exon	FALSE	canonical	2	4	junction_3	63.9607660354122	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	92210702	92231502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
63066	chr12	-	1897	6	NNC	ENSMUSG00000059436.14	novel	1942	5	NA	NA	-19	-414	intron_retention	FALSE	non_canonical	0	0	junction_1	23.3032186618072	1	89	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAAATCTTCATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	77008994	76984461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76984771_76985190_76986289_76986740_76986865_76999942_77000051_77008036_77008064_77008763
63067	chr5	+	1168	8	ISM	ENSMUSG00000033773.15	ENSMUST00000112654.8	2914	12	5	22523	1	13411	5prime_fragment	FALSE	canonical	3	138	junction_1	9.29559913428425	10	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTGTCGGACACTCTG	NA	False	NA	NA	False	NA	NA	NA	107745587	107768265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687
63068	chr3	+	2448	6	NNC	ENSMUSG00000042626.14	novel	2617	12	NA	NA	232	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	226.151630549063	1	142	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACCTCGGCCTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	89332064	89337317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89332200_89333821_89334009_89334094_89334165_89334254_89334378_89334514_89334754_89335623
63069	chr12	-	1161	4	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	553.795590047046	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105188977	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183321_105183364_105183961_105184481_105184552_105188791
63070	chr10	-	1311	7	Fusion	ENSMUSG00000040521.12_ENSMUSG00000080115.4	novel	1206	6	NA	NA	148	-3	multi-exon	FALSE	canonical	3	13	junction_6	464.342336596132	37	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTAATGTGTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	126877234	126858203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126876911_126876969_126877086
63071	chrX	-	2763	2	NNC	ENSMUSG00000054737.12	novel	2417	4	NA	NA	10	-1494	intron_retention	TRUE	non_canonical	0	0	junction_1	0	6	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACGCTTGCCCCCCACCG	3312	False	NA	NA	False	NA	NA	NA	20928215	20925410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_20925445_20925486
63072	chr4	+	1071	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	71	0	71	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	7922	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	140688584	140706504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
63073	chr4	+	470	4	NNC	ENSMUSG00000028334.11	novel	2179	6	NA	NA	19	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	442.233975276537	4	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCATCGGGTATTCCGGG	22	True	NA	NA	False	NA	NA	NA	46489337	46500737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46489491_46492705_46492914_46500136_46500221_46500712
63074	chrX	-	882	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	18	1	18	-1	multi-exon	FALSE	canonical	3	131	junction_2	38	588	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGCCTGGGTGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	101295769	101290987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101291615_101292168_101292294_101295639
63075	chr17	+	1615	3	NIC	ENSMUSG00000092558.4	novel	2054	4	NA	NA	9	-3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	133.5	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTAGCGTTTTGGCCTTC	NA	False	NA	NA	False	NA	NA	NA	47922518	47935170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_47922618_47923887_47924043_47933809
63076	chr2	+	1149	9	NNC	ENSMUSG00000039041.16	novel	1535	10	NA	NA	22	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	777.506501178608	5	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTATGGTCTGGGCCTGT	NA	False	NA	NA	False	NA	NA	NA	179813428	179818076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816138_179817051_179817186_179817390_179817549_179817646_179817750_179817866
63078	chr17	+	738	5	NNC	ENSMUSG00000002660.9	novel	983	6	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	664.327244285525	4	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	NA	False	NA	NA	NA	57297312	57303188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57299883_57302877
63079	chr8	+	1105	1	Intergenic	novelGene_1654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTCCAGAGGTCCTATG	1457	False	NA	NA	False	NA	NA	NA	70075920	70077025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_70075900_70077000
63081	chr12	-	729	8	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	6996.89028593913	4	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685880	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685127_28685204_28685414_28685487_28685578_28685663_28685854
63082	chr19	-	714	3	NNC	ENSMUSG00000024844.16	novel	758	3	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	675.5	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	9002	False	NA	NA	False	NA	NA	NA	5416375	5414667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5415158_5415845_5415985_5416290
63083	chr11	-	2814	17	ISM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	6017	1	1034	0	3prime_fragment	TRUE	canonical	0	0	junction_2	20.1415886600337	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGGATTTGTCACTGTTT	NA	False	NA	NA	False	NA	NA	NA	32166283	32159585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_32160224_32160397_32160552_32160657_32160759_32160826_32160903_32161110_32161206_32161581_32161646_32161919_32162021_32162622_32162785_32162867_32162943_32163051_32163164_32163259_32163518_32163951_32164110_32164181_32164305_32164392_32164603_32164909_32165124_32165933_32166065_32166141
63084	chrX	-	1536	9	FSM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	25	75	25	-75	multi-exon	FALSE	canonical	3	58	junction_8	23.4837044564949	219	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTAAGATTCTGTAATGA	NA	False	NA	NA	False	NA	NA	NA	20797769	20791767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
63085	chr16	-	268	1	Genic_Genomic	ENSMUSG00000022771.18	novel	NA	NA	NA	NA	2332	253	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAAATAAATCTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16926728	16926460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_16926500_16926700
63087	chr14	-	859	1	Genic_Genomic	ENSMUSG00000097743.2	novel	NA	NA	NA	NA	-638	-3701	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTCTGAATTTTAAAGGT	NA	False	NA	NA	False	NA	NA	NA	56939363	56938504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_56938500_56939400
63089	chr3	+	438	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	50	-44	50	44	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24387281	24387719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_24387300_24387700
63090	chr7	-	1533	2	ISM	ENSMUSG00000030590.16	ENSMUST00000153251.8	791	5	1199	-40	1083	-2	3prime_fragment	FALSE	canonical	3	299	junction_1	0	43	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATAGGATCTTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	28853945	28851938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28852273_28852746
63092	chr3	+	1680	3	FSM	ENSMUSG00000028023.17	ENSMUST00000042587.12	2271	3	597	-6	294	3	multi-exon	FALSE	canonical	2	5	junction_1	0	30	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGATTCTTTCTCCCTC	NA	False	NA	NA	False	NA	NA	NA	129008217	129013243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_129008431_129009287_129009494_129011982
63093	chr3	+	1687	10	FSM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	16	18	16	-18	multi-exon	FALSE	canonical	3	56	junction_1	13.4200881305638	74	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAACCAGATGGATAAACG	NA	False	NA	NA	False	NA	NA	NA	104688387	104693316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
63095	chr4	-	2244	20	NNC	ENSMUSG00000028678.14	novel	2842	20	NA	NA	0	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	109.186896619291	1	120	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCACCAATGATGACTTCAA	NA	False	NA	NA	False	NA	NA	NA	117039789	117017374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029015_117029498_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
63096	chr12	+	1497	12	NNC	ENSMUSG00000021235.14	novel	1776	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	67.4406993875679	2	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	84408814	84420566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84409012_84413658_84413794_84414916_84414967_84415378_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
63097	chr15	+	2030	9	NNC	ENSMUSG00000003352.15	novel	2513	13	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	19.3192747017066	36	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCCTCCGGTGTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	98530257	98542406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98530402_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98539046_98539139_98539280_98539340_98539496_98539566_98541167
63098	chr2	+	1166	11	ISM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	460	15	-114	-13	3prime_fragment	FALSE	canonical	3	758	junction_2	58.9983898085363	35	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGTGATAGGAATGACT	NA	False	NA	NA	False	NA	NA	NA	155850424	155860184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
63099	chr11	-	1474	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	-29	-162	-5	26	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	548	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGGGGCTGTGTTTGGCCT	NA	False	NA	NA	False	NA	NA	NA	66943425	66928704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
63100	chr5	-	1421	6	NNC	ENSMUSG00000029603.16	novel	2961	8	NA	NA	-817	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.2751587517924	3	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	NA	False	NA	NA	NA	120821797	120818267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_120819112_120820382_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751
63101	chr6	-	1331	7	FSM	ENSMUSG00000068250.14	ENSMUST00000111535.8	1457	7	0	126	0	-6	multi-exon	FALSE	canonical	3	74	junction_5	14.7723465374402	473	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAATGATTTATTGT	NA	False	NA	NA	False	NA	NA	NA	149090210	149058770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149090103
63102	chr14	-	1019	11	NNC	ENSMUSG00000022217.15	novel	855	5	NA	NA	896	3064	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1878	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGAGGCGGGGACAGCCT	NA	False	NA	-12	True	NA	NA	NA	55818985	55815908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55816069_55817049_55817081_55817223_55817288_55817384_55817497_55817568_55817619_55817789_55817890_55818056_55818118_55818197_55818267_55818372_55818429_55818507_55818596_55818757
63103	chr2	+	813	7	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	3	24	junction_6	449.099623939079	402	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGCACATCTGTAATCAT	NA	False	NA	NA	False	NA	NA	NA	145745177	145758338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723_145757808_145758112
63104	chr10	+	1352	15	NNC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	51	998	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	238.249397712154	1	56	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAGGAGTCTTTCTCCCC	9267	False	NA	NA	False	NA	NA	NA	127102306	127118817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113195_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269_127117353_127118736
63106	chr6	+	2294	17	NNC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	72	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.1854164885735	31	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAACCAAGTAGCACTCGT	5828	False	NA	NA	False	NA	NA	NA	113448459	113460096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113448768_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
63107	chr1	-	2392	1	ISM	ENSMUSG00000026313.17	ENSMUST00000097644.9	8100	27	249171	0	3694	0	mono-exon	FALSE	NA	NA	NA	NA	NA	47	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCTACCTCCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	91858892	91856500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_91856500_91858900
63108	chr16	+	1691	7	ISM	ENSMUSG00000022701.19	ENSMUST00000122014.8	1822	8	21	7639	-20	-7639	5prime_fragment	FALSE	canonical	3	68	junction_1	8.29993306532582	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACATTTTCCCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	43710282	43752291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556
63109	chr17	-	2107	14	NIC	ENSMUSG00000063011.8	novel	2044	17	NA	NA	-27	0	intron_retention	FALSE	canonical	2	3	junction_13	17.5165179863711	46	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCCTGTAGTGTTCC	6915	False	NA	NA	False	NA	NA	NA	25973028	25967588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972747
63111	chr17	-	2532	2	Intergenic	novelGene_16	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAAGGGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	13903396	13897526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_13898021_13901358
63112	chr8	-	1582	1	FSM	ENSMUSG00000030735.7	ENSMUST00000032981.7	1356	1	-29	-197	-29	197	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGGAGAGGGAGGCAAATA	6310	False	NA	NA	False	NA	NA	NA	67968271	67966689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_67966700_67968300
63113	chr10	-	1870	6	NIC	ENSMUSG00000087177.8	novel	503	5	NA	NA	-8	-10	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	5.31413210223457	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTATGTGTATGAGTGTT	5840	False	NA	NA	False	NA	NA	NA	39607820	39497419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_39498724_39508945_39509013_39515559_39515763_39516375_39516508_39557468_39557546_39607733
63114	chr2	+	607	6	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2037.6672348546	27	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTTGACTGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	26800775	26803321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26800843_26801017_26801139_26801433_26801519_26802694_26802814_26802999_26803070_26803176
63115	chr7	+	2668	7	Fusion	ENSMUSG00000078765.12_ENSMUSG00000036826.15	novel	564	7	NA	NA	0	-805	intron_retention	FALSE	non_canonical	0	0	junction_4	219.58932629393	1	119	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGGATGTCTGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	30262772	30266579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263700_30263920_30264033_30264127_30264224_30264519
63116	chr7	+	412	2	Genic_Genomic	ENSMUSG00000091955.3	novel	485	1	NA	NA	-11	-10	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGGGCATGATT	NA	False	NA	NA	False	NA	NA	NA	24561626	24562112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_24561835_24561908
63118	chr3	+	1825	9	FSM	ENSMUSG00000033860.14	ENSMUST00000194175.2	1741	9	7	-91	7	91	multi-exon	FALSE	canonical	3	22	junction_4	1.69096865730859	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTAATATATCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	82915174	82922103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444
63119	chr2	+	874	8	NNC	ENSMUSG00000079484.13	novel	1390	11	NA	NA	0	-1217	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	28.2611726145788	82	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCGTGTGCCACCACCGC	NA	False	NA	NA	False	NA	NA	NA	30156867	30168321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167951_30168251
63120	chr4	+	802	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	28	192	28	-192	multi-exon	FALSE	canonical	3	445	junction_1	0	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCCTGTGTGCATTCT	NA	False	NA	NA	False	NA	NA	NA	127137604	127141410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_127137692_127140695
63121	chr7	-	1427	5	NNC	ENSMUSG00000030493.14	novel	831	5	NA	NA	28	21	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	61.4913611818766	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAAACAATGAACATGACT	NA	False	NA	NA	False	NA	NA	NA	35096233	35091708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637_35095841_35096110
63122	chr7	+	1421	5	ISM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	301	3	301	-3	3prime_fragment	FALSE	canonical	2	31	junction_3	16.2230545829076	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTCCAATGTGTGTGCC	656	False	NA	NA	False	NA	NA	NA	43430759	43434831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
63125	chr2	-	1018	4	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6382	0	6382	0	3prime_fragment	FALSE	canonical	3	109	junction_3	14.8996644257513	771	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4151	False	NA	NA	False	NA	NA	NA	84646614	84641519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227
63126	chr9	-	598	2	Genic_Genomic	ENSMUSG00000058443.6	novel	768	1	NA	NA	-14	-21	multi-exon	FALSE	canonical	1	57	junction_1	0	29	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_50255750_50255912
63128	chr10	-	800	3	NNC	ENSMUSG00000001666.9	novel	649	3	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	241.5	163	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCAAACATGACTTCTTT	NA	False	NA	NA	False	NA	NA	NA	75609250	75607071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75607341_75608571_75608902_75609049
63129	chr3	+	2342	9	ISM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	570	0	570	0	3prime_fragment	FALSE	canonical	3	74	junction_7	10.7470926301023	62	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	NA	NA	NA	104688941	104693334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
63130	chr7	+	1726	13	NNC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-31	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	503.363437289599	56	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTTGTTGTATTTTAC	4	False	NA	NA	False	NA	NA	NA	5065212	5082913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180_5082289_5082650
63131	chr2	-	1211	12	FSM	ENSMUSG00000027406.14	ENSMUST00000239288.2	1233	12	27	-5	0	1	multi-exon	FALSE	canonical	3	48	junction_1	222.733469301557	16	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATCTGGTTTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	130126354	130121231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130121358_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
63132	chr13	+	1968	6	Intergenic	novelGene_1412	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	38	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAGCCTGCAACAGCAACA	NA	False	NA	NA	False	NA	NA	NA	65458021	65496376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65458902_65459941_65460633_65481015_65481146_65488362_65488423_65488790_65488918_65496296
63133	chr7	-	799	5	NNC	ENSMUSG00000033916.6	novel	949	6	NA	NA	-5	0	intron_retention	FALSE	non_canonical	0	0	junction_2	1209.48509188828	17	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6998	False	NA	NA	False	NA	NA	NA	12768671	12765940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_12766130_12766215_12766485_12766731_12766749_12767755_12767970_12768561
63134	chr1	-	1564	1	ISM	ENSMUSG00000099364.3	ENSMUST00000190504.3	2091	2	14599	253	14599	-253	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCTAAAAATACACACCAAC	NA	False	NA	NA	False	NA	NA	NA	78573479	78571915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_78571900_78573500
63135	chr8	-	2210	5	Intergenic	novelGene_1612	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCTACCCACTCCCCAGA	NA	False	NA	NA	False	NA	NA	NA	31727018	31677411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_31677489_31678327_31678432_31684978_31685321_31691240_31691528_31725618
63136	chr11	-	1710	6	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	5289	0	1521	0	3prime_fragment	FALSE	canonical	2	6	junction_4	6.99714227381436	64	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGCTGTCTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	87761073	87754825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376_87759548_87760072_87760329_87760646
63137	chr9	+	2160	5	FSM	ENSMUSG00000032456.14	ENSMUST00000112935.8	2166	5	-4	10	-4	-10	multi-exon	FALSE	canonical	1	2	junction_1	3.53553390593274	20	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATGAAAAGTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	98178631	98293477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_98179034_98236071_98236218_98281508_98281693_98285586_98285667_98292129
63138	chr14	+	1965	16	Antisense	novelGene_ENSMUSG00000035726.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	123	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGAATCCCGCACTCTCTG	NA	False	NA	NA	False	NA	NA	NA	52411451	52434678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52411591_52412700_52412829_52413818_52413964_52414092_52414183_52414405_52414502_52414611_52414677_52415500_52415614_52415739_52415815_52416930_52417019_52417557_52417729_52418476_52418626_52418993_52419143_52419614_52419767_52420468_52420640_52421384_52421481_52434540
63140	chr5	-	1809	4	NIC	ENSMUSG00000029617.11	novel	1769	15	NA	NA	-846	-20	intron_retention	FALSE	canonical	3	886	junction_3	38.9044413345772	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTAAAGTTTTTAAAAATA	NA	False	NA	NA	False	NA	NA	NA	143930248	143924746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143925068_143927455_143927584_143928289_143929445_143930043
63142	chr11	+	695	1	Intergenic	novelGene_2392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGGAGTGAACTGCCACA	NA	False	NA	NA	False	NA	NA	NA	69263840	69264535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_69263800_69264500
63143	chr1	+	1698	5	NNC	ENSMUSG00000018196.19	novel	924	4	NA	NA	1277	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.11951543294907	6	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	143617389	143622514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_143617435_143618379_143619462_143620784_143620966_143621711_143621833_143622245
63144	chr9	+	2304	18	NNC	ENSMUSG00000032410.14	novel	6235	40	NA	NA	1275	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	13.949240655996	9	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATACTTCAGTGTACAAAT	NA	False	NA	NA	False	NA	NA	NA	95856844	95893879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873243_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576
63145	chr9	-	501	1	Antisense	novelGene_ENSMUSG00000032294.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCTAGAAGAGGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	59586647	59586146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_59586100_59586600
63147	chr12	-	443	1	ISM	ENSMUSG00000042724.9	ENSMUST00000035987.9	4564	11	59092	631	58791	398	mono-exon	FALSE	NA	NA	NA	NA	NA	5	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGATCTGACTTATCGTC	NA	False	NA	NA	False	NA	NA	NA	81768857	81768414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_81768400_81768900
63150	chr17	+	1386	4	NNC	ENSMUSG00000024014.9	novel	2698	6	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	842.204382689987	1	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATGCAAAACAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	29709738	29714414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29709922_29710830_29711006_29712695_29712873_29713563
63151	chr18	+	4368	18	NNC	ENSMUSG00000037416.14	novel	11319	43	NA	NA	128	-52738	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	20.2855054189884	7	31	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCATTGACCTTTCACAA	NA	False	NA	NA	False	NA	NA	NA	49966191	50012243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_49966244_49973453_49973580_49976852_49976925_49979651_49979731_49981734_49981862_49984496_49984564_49985312_49985496_49990299_49990490_49992182_49992352_49995971_49996185_49997014_49997269_49997376_49998062_49998149_49998272_50000871_50000962_50001041_50001145_50003939_50004060_50004636_50004859_50010749
63153	chr11	+	1924	5	ISM	ENSMUSG00000011256.17	ENSMUST00000151565.8	1747	12	10939	-1263	4722	1263	3prime_fragment	FALSE	canonical	3	430	junction_2	24.7626230436115	1	94	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCAACCAGAGTTTTATC	NA	False	NA	NA	False	NA	NA	NA	46029670	46035947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
63154	chrX	-	1208	9	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_7	662.694499750828	4	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	72974400	72965728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72974013_72974124_72974319
63155	chr10	+	3660	6	Antisense	novelGene_ENSMUSG00000020100.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	177	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCGCTGGGCCACTGTG	NA	False	NA	NA	False	NA	NA	NA	60549414	60588542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_60552268_60556637_60556811_60559552_60559769_60566347_60566436_60586167_60586468_60588512
63156	chr9	-	1049	5	ISM	ENSMUSG00000032207.11	ENSMUST00000034731.10	1920	9	118050	41	117855	3	3prime_fragment	FALSE	canonical	3	43	junction_2	8.95823643358446	270	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGGTGTGCTTTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	70724040	70705450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_70705691_70709354_70709574_70710978_70711097_70719951_70720195_70723811
63157	chr8	+	372	2	FSM	ENSMUSG00000109772.2	ENSMUST00000210446.2	429	2	-21	78	-21	-78	multi-exon	FALSE	canonical	2	6	junction_1	0	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGGTGTGCCCACAGGA	NA	False	NA	NA	False	NA	NA	NA	11924137	11944035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_11924331_11943856
63158	chr11	-	1493	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	-114	-4	-114	4	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	516	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGATTCCTTTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	113600466	113588993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
63160	chr6	-	1297	11	NNC	ENSMUSG00000030032.15	novel	1216	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	14.2130221979704	153	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9900	False	NA	NA	False	NA	NA	NA	83133361	83129690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132218_83132459_83132523_83132630_83132854_83133156_83133228_83133296
63162	chr2	-	1233	4	FSM	ENSMUSG00000015335.17	ENSMUST00000137001.2	846	4	-8	-379	-8	-1	multi-exon	FALSE	canonical	3	619	junction_3	30.9443945740671	2085	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCATGCTGCCGTGGA	NA	False	NA	NA	False	NA	NA	NA	29983636	29980963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_29981846_29981999_29982078_29982416_29982554_29983500
63163	chr11	-	1631	9	NIC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-624	-232	combination_of_known_splicesites	FALSE	canonical	3	107	junction_6	291.76143400902	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCGTCAGATCTACAAGGAA	9598	False	NA	NA	False	NA	NA	NA	69570645	69564398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69569052_69569111_69569447_69569560_69569647
63164	chr4	-	986	1	Antisense	novelGene_ENSMUSG00000028581.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTGGTGGGAGGGGCTC	NA	False	NA	NA	False	NA	NA	NA	130663450	130662464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_130662500_130663400
63165	chr10	+	1011	11	NNC	ENSMUSG00000078427.4	novel	918	11	NA	NA	-6	-8	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_9	1900.27065440689	1	40	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGGAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	128657794	128713478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128689051_128689121_128708289_128708380_128709424_128709584_128713201
63166	chr14	+	304	1	Intergenic	novelGene_550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCCCCAGGGAGCTCCCC	NA	False	NA	NA	False	NA	NA	NA	41423337	41423641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_41423300_41423600
63168	chr11	+	1965	5	FSM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	8	5	8	-5	multi-exon	FALSE	canonical	3	60	junction_1	12.7549010188241	213	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTACTGGGCTTTGGGGCT	8345	False	NA	NA	False	NA	NA	NA	78356530	78362766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78356832_78357176_78358030_78359450_78359535_78361520_78361678_78362196
63169	chr5	+	1622	7	FSM	ENSMUSG00000029279.16	ENSMUST00000112677.10	1607	7	-8	-7	8	7	multi-exon	FALSE	canonical	2	3	junction_2	0.74535599249993	26	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTTTGCCCTCATTT	NA	False	NA	NA	False	NA	NA	NA	107479032	107498614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_107479174_107489165_107489308_107489885_107490126_107491418_107491557_107493001_107493117_107496331_107496505_107497941
63170	chr17	-	1029	5	NNC	ENSMUSG00000004865.17	novel	2007	12	NA	NA	1123	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	292.927038697352	1	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATCTGTGGTTTCTATG	NA	False	NA	NA	False	NA	NA	NA	28818737	28808568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28809026_28811191_28811262_28813143_28813252_28817875_28817977_28818444
63171	chr7	+	689	4	ISM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	44	459	44	0	intron_retention	FALSE	canonical	3	19383	junction_3	906.691543776358	28	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050120	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787
63172	chr1	-	3134	7	ISM	ENSMUSG00000016200.15	ENSMUST00000215093.2	9274	9	52	38755	-6	75	5prime_fragment	FALSE	canonical	2	2	junction_3	7.41057802513857	5	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACCTCAAGCTTTTTA	180	False	NA	NA	False	NA	NA	NA	192718031	192612295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_192613236_192615421_192615694_192662653_192662870_192665827_192667220_192669025_192669191_192709277_192709326_192717930
63173	chr8	-	1810	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	451	1	451	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTATGTCATGATTTCTT	NA	False	NA	NA	False	NA	NA	NA	106738063	106736253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106736300_106738100
63176	chrX	+	1177	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	3	-3	3	0	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	686	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	NA	False	NA	NA	False	NA	NA	NA	7917832	7939198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
63177	chr9	-	800	5	FSM	ENSMUSG00000079677.3	ENSMUST00000010348.7	812	5	13	-1	-9	1	multi-exon	FALSE	canonical	3	216	junction_3	56.6171352154098	612	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGACATGTTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	20984827	20978814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
63178	chr4	+	2335	3	ISM	ENSMUSG00000028988.14	ENSMUST00000105692.2	634	4	667	-1892	667	-37	3prime_fragment	FALSE	canonical	3	193	junction_2	8	62	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAGAAAAAAAATAACAATA	903	False	NA	NA	False	NA	NA	NA	149630240	149650857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_149630289_149630858_149630950_149648661
63179	chr3	+	3033	3	Antisense	novelGene_ENSMUSG00000027792.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAGCAAAGAATAAGCAG	NA	False	NA	NA	False	NA	NA	NA	73546035	73609431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_73547377_73555971_73556137_73607904
63180	chr10	-	1596	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	-8	14	-8	-8	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACACACTCTAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	41366344	41363181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
63182	chr7	-	1524	2	FSM	ENSMUSG00000031077.8	ENSMUST00000033394.8	3903	2	4	2375	4	-2375	multi-exon	FALSE	canonical	3	26	junction_1	0	81	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTGGCTGGGTGTGATA	NA	False	NA	NA	False	NA	NA	NA	144136196	144133429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_144134598_144135840
63183	chr7	-	1385	3	FSM	ENSMUSG00000041583.9	ENSMUST00000108513.5	1344	3	-44	3	-44	-3	multi-exon	FALSE	canonical	3	46	junction_1	9.5	186	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTGCCAGTTTTTACC	NA	False	NA	NA	False	NA	NA	NA	15573647	15567168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_15567876_15568304_15568891_15573555
63185	chr1	-	943	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	-21	-31	-21	31	mono-exon	FALSE	NA	NA	NA	NA	NA	2	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837426	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837400
63186	chr17	+	1014	7	NNC	ENSMUSG00000023967.10	novel	884	6	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	505.006820636008	4341	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGTGTGGTCAGTGCTTAG	NA	False	NA	NA	False	NA	NA	NA	46421933	46439834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46422056_46428865_46428898_46433649_46433758_46435901_46436056_46436215_46436340_46436568_46436639_46439430
63187	chr5	-	1758	4	NNC	ENSMUSG00000041609.17	novel	595	4	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	14.4299072146089	59	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGACCTTGTGCCTCAGTTC	NA	False	NA	NA	False	NA	NA	NA	115791037	115786237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115787629_115789877_115789999_115790685_115790878_115790983
63188	chr16	+	2979	13	NNC	ENSMUSG00000022708.17	novel	563	8	NA	NA	-22	-257	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4.14996653266291	12	63	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAAAAAGCTATGGCAC	NA	False	NA	NA	False	NA	NA	NA	42696221	43439175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_42696288_42845300_42845351_42892786_42892833_42967259_42967307_43013827_43013902_43122928_43122979_43283309_43283350_43390043_43390145_43392096_43392155_43397392_43397557_43397923_43398112_43429689_43431295_43438685
63190	chrX	-	618	6	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	6497.21074308045	44	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230069_101231509_101231609_101231899_101231978_101232903
63191	chr1	-	2452	1	NIC	ENSMUSG00000026701.16	novel	2387	5	NA	NA	4782	290	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAGCTCCAAAGCGCTC	NA	False	NA	NA	False	NA	NA	NA	161073342	161070890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_161070900_161073300
63192	chr3	-	1769	2	ISM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	352	18	145	-16	3prime_fragment	FALSE	canonical	3	49	junction_1	0	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTCTTTCTTCTACAA	1296	False	NA	NA	False	NA	NA	NA	115681391	115675247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_115675488_115679862
63194	chr7	-	1001	8	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	0	-612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1008.8423148969	1	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59654859	59632861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633029_59636543_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59652683_59652811_59654783
63195	chrX	+	629	5	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-25	98	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	271.685479921177	528	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	NA	False	NA	NA	NA	37689506	37702401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_37689596_37691516_37691551_37694815_37694950_37700642_37700711_37702097
63196	chr17	-	1137	4	Antisense	novelGene_ENSMUSG00000007603.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGAGGGGGAGCAAACAG	4627	False	NA	NA	False	NA	NA	NA	57077089	57075504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_57075628_57075804_57075902_57076048_57076125_57076248
63197	chr5	+	1309	1	Intergenic	novelGene_866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACAGCAGTATTCCCAGCA	NA	False	NA	NA	False	NA	NA	NA	135933103	135934412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_135933100_135934400
63200	chr5	+	1773	3	FSM	ENSMUSG00000060512.8	ENSMUST00000196367.5	557	3	140	-1356	140	-3	multi-exon	FALSE	canonical	2	5	junction_1	1	17	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACGGTATATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	64033791	64056965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_64033843_64053772_64053827_64055297
63202	chr10	+	583	3	ISM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	7	0	7	0	intron_retention	FALSE	canonical	3	5732	junction_1	1371.5	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6349	False	NA	NA	False	NA	NA	NA	80128293	80129948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80128318_80128608_80128695_80129475
63203	chr3	-	3322	15	FSM	ENSMUSG00000037652.16	ENSMUST00000129817.9	3019	15	-18	-285	-2	-41	multi-exon	FALSE	canonical	1	3	junction_1	3.2919196062294	37	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCTTTTAAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	31023566	30961174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30961640_30968243_30968476_30968566_30968700_30970751_30970867_30976345_30976506_30983961_30984213_30985887_30986042_30990433_30991306_30996557_30996802_31002850_31002950_31005024_31005181_31012157_31012236_31015876_31016033_31019921_31020085_31023522
63204	chrX	+	848	2	ISM	ENSMUSG00000087193.8	ENSMUST00000153013.8	801	4	21315	-381	19052	381	3prime_fragment	TRUE	canonical	3	17	junction_1	0	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGTCCGTTTCCATCA	NA	False	NA	NA	False	NA	NA	NA	7936881	7941239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_7937304_7940813
63205	chr2	+	2125	1	NIC	ENSMUSG00000027509.12	novel	1742	12	NA	NA	1096	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	16	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCCCTTCATCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	172855349	172857474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_172855300_172857500
63206	chr18	+	1051	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	22	329	-6	-322	multi-exon	FALSE	canonical	3	1641	junction_2	78	2288	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCGTGACTGTCTGTTA	NA	False	NA	NA	False	NA	NA	NA	77017734	77028979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77017913_77027263_77027366_77028208
63207	chr11	+	1999	3	Antisense	novelGene_ENSMUSG00000020706.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGCAGGTTTTCAACTCT	1907	False	NA	NA	False	NA	NA	NA	106144350	106146608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106145505_106145601_106146252_106146413
63208	chr7	+	1259	8	NNC	ENSMUSG00000025503.6	novel	1229	8	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1279.88947226879	4	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3814	False	NA	NA	False	NA	NA	NA	140972085	140982881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140972232_140975961_140976090_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
63209	chr8	-	1397	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	116	11	116	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAAAACGCGCGGCTTGT	NA	False	NA	NA	False	NA	NA	NA	85389367	85387970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85388000_85389400
63210	chr5	-	1671	1	Intergenic	novelGene_880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAATCCGACCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	143185977	143184306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_143184300_143186000
63211	chr2	+	2015	1	ISM	ENSMUSG00000044042.20	ENSMUST00000099576.9	11817	19	382289	4728	1354	2184	mono-exon	FALSE	NA	NA	NA	NA	NA	9	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGTTTCTATAGATTTA	NA	False	NA	NA	False	NA	NA	NA	113540369	113542384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_113540400_113542400
63212	chr18	-	1205	4	NIC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	104	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	180.261538388593	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	NA	False	NA	NA	NA	53551083	53539403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_53540138_53542196_53542382_53544577_53544692_53550911
63213	chr17	-	1195	5	NIC	ENSMUSG00000015478.14	novel	1238	6	NA	NA	-27	-15	intron_retention	FALSE	canonical	3	17	junction_2	458.87927333886	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACGTTGCTGGGAAGTC	768	False	NA	NA	False	NA	NA	NA	34822691	34820079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_34820641_34820714_34820833_34821058_34821172_34821264_34821284_34822307
63214	chr8	+	1575	3	NIC	ENSMUSG00000015013.10	novel	1659	5	NA	NA	-6	-1077	intron_retention	FALSE	canonical	3	528	junction_1	44.5	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAGATCTACGTTGTCC	5510	False	NA	NA	False	NA	NA	NA	123338372	123342322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123338433_123339804_123341127_123342129
63215	chr7	-	989	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	0	5	0	-5	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	349	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGTGGAGTCTTTGCTG	2034	False	NA	NA	False	NA	NA	NA	114235592	114230717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
63216	chr11	+	1451	5	NIC	ENSMUSG00000018449.13	novel	548	6	NA	NA	-7	-12	intron_retention	FALSE	canonical	3	39	junction_3	128.657248144051	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGACATCTCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	70861298	70868615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70865867_70868483
63218	chr9	-	1834	10	NIC	ENSMUSG00000006675.11	novel	1841	9	NA	NA	-9	-27	combination_of_known_junctions	FALSE	canonical	2	11	junction_5	18.6474769087329	65	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCAGCCAGGGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	108474788	108456087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108459280_108459379_108460045_108460143_108460840_108461032_108474097_108474180_108474406
63220	chr17	-	1736	7	Antisense	novelGene_ENSMUSG00000073411.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	60	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCCCGCGGGTTGCGTGG	NA	False	NA	NA	False	NA	NA	NA	35486466	35482071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35482162_35482353_35482624_35482813_35483087_35484755_35485035_35485161_35485317_35485658_35485701_35485839
63221	chr17	+	1156	10	NNC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	-9	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	42.8237847838077	1	21	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAAGTGATGTGGCATTG	8843	False	NA	NA	False	NA	NA	NA	79143008	79152788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148475_79148647_79148739_79149541_79149659_79151247_79151330_79152572
63222	chr5	-	1842	7	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-2	-11	intron_retention	FALSE	canonical	3	150	junction_6	34.7678810909661	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCCTCACCGGCC	NA	False	NA	NA	False	NA	NA	NA	110256029	110251855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255721
63223	chr17	+	678	1	Intergenic	novelGene_314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGGCTGTCCTGGTACT	NA	False	NA	NA	False	NA	NA	NA	88283983	88284661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_88284000_88284700
63224	chr8	-	1481	1	Intergenic	novelGene_1642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGCTTTATATATAAAGT	NA	False	NA	NA	False	NA	NA	NA	48790557	48789076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_48789100_48790600
63225	chr12	+	1381	5	Antisense	novelGene_ENSMUSG00000112008.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGGAGCGGCCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	76984464	77008809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_76985530_76986187_76986291_76986746_76986833_76999970_77000045_77008756
63226	chr17	+	889	6	NNC	ENSMUSG00000002660.9	novel	983	6	NA	NA	-43	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	598.383689617289	2	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGTCCCATGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	57297348	57303176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57299976_57300447_57300554_57302877
63228	chr17	-	1500	5	FSM	ENSMUSG00000061046.10	ENSMUST00000148986.8	848	5	60	-712	25	-3	multi-exon	FALSE	canonical	3	7	junction_4	22.2078251974389	6	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCAGTGTGGTACCAGA	4419	False	NA	NA	False	NA	NA	NA	26004481	26001801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26002557_26002758_26002861_26003048_26003547_26003634_26003700_26004401
63230	chr16	-	3298	5	NNC	ENSMUSG00000022538.21	novel	2724	11	NA	NA	463	791	intron_retention	FALSE	non_canonical	0	0	junction_1	217.235327467703	1	132	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACGTCATAGTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	30393598	30386039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30386661_30387931_30388067_30388146_30388249_30389982_30392188_30393363
63233	chr17	-	1791	2	ISM	ENSMUSG00000062753.15	ENSMUST00000080190.9	677	4	11	6	11	-2	intron_retention	FALSE	canonical	3	267	junction_1	0	23	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAAGTTGCCCTCCTTGG	NA	False	NA	NA	False	NA	NA	NA	27784671	27782748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27782991_27783122
63234	chr11	+	1568	4	FSM	ENSMUSG00000020812.19	ENSMUST00000239363.2	1631	4	65	-2	0	0	multi-exon	FALSE	canonical	3	112	junction_3	32.5371582450998	38	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTAGCATTGTGGG	NA	False	NA	NA	False	NA	NA	NA	116562494	116566621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116563565_116564763_116564898_116565125_116565202_116566333
63235	chr4	-	812	7	NNC	ENSMUSG00000028568.17	novel	624	7	NA	NA	-13	193	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416.198970846077	7	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACAGTGGACAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	108690774	108673721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108673822_108673883_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
63236	chr1	-	987	4	NNC	ENSMUSG00000060743.13	novel	2841	4	NA	NA	-15	114	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1157.28484921484	3	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACATTAAACTATACC	NA	False	NA	NA	False	NA	NA	NA	180641127	180630147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180630771_180637681_180637846_180639406_180639515_180641035
63237	chr6	-	1672	7	FSM	ENSMUSG00000068329.13	ENSMUST00000134606.8	883	7	-597	-192	8	-1	multi-exon	FALSE	canonical	3	465	junction_4	56.9846470551499	2	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACATGTTACAGTCAAAAG	2034	False	NA	NA	False	NA	NA	NA	83031415	83028265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593
63238	chr3	-	992	1	ISM	ENSMUSG00000033400.15	ENSMUST00000040603.14	9625	34	64098	3078	37182	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	12	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAAAATAAAAGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	116537717	116536725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_116536700_116537700
63239	chr15	+	1059	7	NNC	ENSMUSG00000001285.13	novel	1480	7	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	188.944803815529	16	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	5940	False	NA	NA	False	NA	NA	NA	102240156	102246286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102240333_102240588_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
63240	chr11	+	2352	7	NNC	ENSMUSG00000040483.16	novel	2597	6	NA	NA	-42	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2.92498812913071	188	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCATTTGGCTCCAAAAT	NA	False	NA	NA	False	NA	NA	NA	72192412	72204519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72192536_72194152_72194289_72195491_72195688_72197389_72197479_72199432_72199751_72202781_72202812_72203059
63241	chr17	+	1484	3	NIC	ENSMUSG00000023979.15	novel	1668	4	NA	NA	17	-6	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	7.5	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAACTTATTGTCCTGGA	1158	False	NA	NA	False	NA	NA	NA	47696345	47703886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_47696622_47701905_47702027_47702799
63242	chr16	+	979	7	FSM	ENSMUSG00000052917.16	ENSMUST00000049128.11	1130	7	2	149	2	-30	multi-exon	FALSE	canonical	3	14	junction_6	9.3407708461347	51	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAATCCACTAAACATTAG	NA	False	NA	NA	False	NA	NA	NA	55895828	55946753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55946503
63243	chr7	+	2409	14	ISM	ENSMUSG00000025477.15	ENSMUST00000097975.3	2301	16	77523	-425	-3621	-2	3prime_fragment	FALSE	canonical	3	132	junction_11	16.9517240051141	57	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCCTGCTGCTTATTCT	NA	False	NA	NA	False	NA	NA	NA	139057927	139159566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_139058012_139061547_139061636_139091323_139091388_139096546_139096651_139103752_139103806_139105577_139105698_139118094_139118180_139138789_139138886_139138979_139139055_139147279_139147354_139154859_139154972_139157265_139157335_139158097_139158186_139158269
63245	chr5	+	942	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	32	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3694.11421544255	5	48	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTTTTTCTGTGTTAAG	NA	False	NA	NA	False	NA	NA	NA	108048469	108055913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049806_108049911_108049994_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055771
63246	chr18	-	1780	14	NNC	ENSMUSG00000044252.19	novel	3030	14	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	143.430745303177	1	91	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGTGTTTGCTAATCTAA	NA	False	NA	NA	False	NA	NA	NA	12995355	12889248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892568_12895613_12895743_12895959_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
63247	chr6	+	1395	7	ISM	ENSMUSG00000001930.18	ENSMUST00000112253.6	2184	10	12848	304	-440	-7	3prime_fragment	FALSE	canonical	0	0	junction_3	11.4455231422596	60	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCCTTCCCGGGAAGCC	3061	False	NA	NA	False	NA	NA	NA	125542773	125569130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125542849_125543092_125543302_125547462_125547588_125565379_125565597_125567141_125567265_125568112_125568225_125568596
63248	chr5	+	1543	10	ISM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-155	1569	22	-14	5prime_fragment	FALSE	canonical	3	25	junction_1	34.906223577529	81	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTGCATCTGACACTAC	NA	False	NA	NA	False	NA	NA	NA	108777719	108792968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
63249	chr14	-	468	2	Intergenic	novelGene_558	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGAAGGTAAGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	48336738	48334492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_48334731_48336508
63250	chr11	-	2664	5	FSM	ENSMUSG00000018920.12	ENSMUST00000019064.9	2699	5	9	26	9	-26	multi-exon	FALSE	canonical	2	5	junction_4	7.17635004720366	16	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTTGGCAAATGTTTTT	7609	False	NA	NA	False	NA	NA	NA	70350801	70344834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70346271_70346480_70346889_70349570_70349654_70349854_70349994_70350203
63251	chr7	-	566	3	ISM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	1399	1435	5	-515	internal_fragment	FALSE	canonical	3	467	junction_1	164.5	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGGGGGCCGCCCCTC	1655	False	NA	NA	False	NA	NA	NA	126624299	126622736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126622879_126623615_126623788_126624047
63252	chrX	-	1517	5	NNC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	-6	-1824	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	40.4868805911248	4	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATATGCATCTCTGCCA	NA	False	NA	NA	False	NA	NA	NA	150799272	150789401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799197
63253	chr7	-	1145	2	FSM	ENSMUSG00000051811.15	ENSMUST00000182272.2	519	2	-498	-128	-3	-2	multi-exon	FALSE	canonical	3	648	junction_1	0	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATATTTGTTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	4756025	4754795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4754975_4755059
63254	chr10	-	1121	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1837.61941164127	1	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959823	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952976_90953070_90953170_90953886_90954079_90954560_90954743_90955388_90955569_90957783_90957819_90959504_90959569_90959777
63255	chr5	+	1559	2	FSM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	194	11	132	-11	multi-exon	FALSE	canonical	3	1727	junction_1	0	911	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGATATTATCTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	33176353	33185299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_33176499_33183885
63256	chr11	-	2120	11	ISM	ENSMUSG00000017724.15	ENSMUST00000017868.7	2395	13	940	8	-43	-8	3prime_fragment	TRUE	canonical	2	11	junction_8	4.15210789840534	37	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTGTTTCTATTTGC	223	False	NA	NA	False	NA	NA	NA	101675257	101660580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_101661417_101661794_101661897_101662153_101662327_101662514_101662584_101662706_101662782_101664434_101664704_101664906_101665072_101666143_101666271_101667918_101667973_101674792_101674841_101675055
63258	chr15	+	1132	8	ISM	ENSMUSG00000036561.10	ENSMUST00000226875.2	2674	20	21104	6	-3241	-6	3prime_fragment	FALSE	canonical	3	7	junction_5	6.21059003408119	6	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTAAAGCTGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	89164252	89170458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_89164268_89164561_89164687_89164957_89165122_89166050_89166208_89166293_89166383_89167085_89167282_89169981_89170210_89170300
63259	chr4	+	1902	2	Intergenic	novelGene_1809	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	79	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACAACGTGGTGTAGCGT	8	False	NA	NA	False	NA	NA	NA	22699816	22703720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_22700014_22702015
63260	chr4	+	1437	9	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	-21	-482	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	159.979686210469	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATATGCTTCTTCCTCGTG	NA	False	NA	NA	False	NA	NA	NA	132857918	132923333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132922074_132922219_132923027
63263	chr2	+	587	1	Antisense	novelGene_ENSMUSG00000081406.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCCATGGGTCAGAACAC	NA	False	NA	NA	False	NA	NA	NA	75021363	75021950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_75021400_75022000
63264	chr14	-	907	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	-35	6	-35	-6	multi-exon	FALSE	canonical	3	1530	junction_1	8	1892	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATTCGTTCCTTCATG	NA	False	NA	NA	False	NA	NA	NA	54491596	54472941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54473171_54480155_54480326_54491088
63265	chr17	-	855	1	FSM	ENSMUSG00000071052.5	ENSMUST00000095218.5	792	1	-22	-41	-22	41	mono-exon	FALSE	NA	NA	NA	NA	NA	3	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATTAAAAAAAAAAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	58146238	58145383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_58145400_58146200
63266	chr11	+	1671	4	ISM	ENSMUSG00000001558.6	ENSMUST00000001599.4	2017	5	3465	39	3455	-39	3prime_fragment	FALSE	canonical	1	1	junction_1	13.6707311029399	3	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAATTCTTTTTTTAAA	1797	False	NA	NA	False	NA	NA	NA	100336207	100347809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_100336699_100337946_100338565_100347109_100347260_100347397
63267	chr17	-	2000	1	Antisense	novelGene_ENSMUSG00000023852.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCGATGGTCTGAGTGC	NA	False	NA	NA	False	NA	NA	NA	15992388	15990388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_15990400_15992400
63268	chr15	-	749	4	Antisense	novelGene_ENSMUSG00000072501.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGATATTTTGCACTCCAT	NA	False	NA	NA	False	NA	NA	NA	66513714	66504581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_66504751_66508532_66508876_66511755_66511924_66513645
63270	chr15	-	510	1	Antisense	novelGene_ENSMUSG00000072501.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GATAGAAAAAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	66486172	66485662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_66485700_66486200
63271	chr15	-	444	1	Antisense	novelGene_ENSMUSG00000072501.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAATAATAAAAAATTGA	NA	False	NA	NA	False	NA	NA	NA	66485310	66484866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_66484900_66485300
63272	chr11	-	1400	8	NIC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	16.8001457719623	75	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATACAGTTTTGGACTTT	4296	False	NA	NA	False	NA	NA	NA	106670364	106659082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
63274	chr11	-	2096	5	FSM	ENSMUSG00000020427.12	ENSMUST00000020702.11	2421	5	325	0	325	0	multi-exon	FALSE	canonical	3	177	junction_4	11.7340317027013	113	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTTTGTCTGTTTCTGG	NA	False	NA	NA	False	NA	NA	NA	7163572	7156085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_7157507_7158368_7158509_7159458_7159579_7160018_7160246_7163384
63275	chr9	+	577	1	Intergenic	novelGene_1053	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCTTGTAGTCATGCTA	2412	False	NA	NA	False	NA	NA	NA	57120123	57120700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_57120100_57120700
63276	chr7	-	1594	3	FSM	ENSMUSG00000100826.7	ENSMUST00000188976.2	2193	3	582	17	-392	-17	multi-exon	FALSE	canonical	3	77	junction_2	5.5	166	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATGTTCTCTCTTATGT	NA	False	NA	NA	False	NA	NA	NA	59623597	59619341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_59620292_59621627_59621693_59623018
63277	chr4	+	1192	8	NIC	ENSMUSG00000036073.19	novel	1595	11	NA	NA	0	-13	intron_retention	FALSE	canonical	2	236	junction_3	32.2509294281512	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTTTTCTGACACCAGA	4	True	NA	NA	False	NA	NA	NA	41756261	41758682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_41756423_41756512_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
63278	chr17	+	1481	11	NIC	ENSMUSG00000004864.14	novel	2937	12	NA	NA	-4	200	intron_retention	FALSE	canonical	3	77	junction_10	10.3580886267689	83	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAATGCCCCTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	28988316	28997678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
63280	chr3	-	2099	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160648.8	3157	7	1	1057	1	0	multi-exon	FALSE	canonical	3	33	junction_5	31.4046174948844	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGTAATTTTTATTTC	9461	False	NA	NA	False	NA	NA	NA	87837433	87830964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230_87835356_87837162
63281	chr15	-	1443	2	Intergenic	novelGene_3357	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	16	junction_1	0	34	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTCTAGAATTTGTC	1467	False	NA	NA	False	NA	NA	NA	97029746	97026296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97027102_97029108
63282	chr5	-	2261	20	Antisense	novelGene_ENSMUSG00000039178.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	188	13	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGCGGGCGTTGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	54061306	53966985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_53967197_53986687_53986763_53987794_53987843_53990311_53990385_53992510_53992587_53993935_53994000_53995263_53995320_53995473_53995579_54003541_54003613_54005497_54005541_54007177_54007291_54014187_54014265_54017485_54017545_54029590_54029678_54032226_54032287_54044676_54044806_54046657_54046750_54054330_54054446_54058915_54058990_54060673
63283	chr7	-	1393	6	ISM	ENSMUSG00000030689.16	ENSMUST00000125624.8	1741	7	569	35	-17	-35	3prime_fragment	FALSE	canonical	3	695	junction_1	106.482674647099	15	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGAAGGCTCTGTATTAA	9224	False	NA	NA	False	NA	NA	NA	126460980	126451639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126452164_126456397_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
63284	chr17	+	2047	7	ISM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	4864	11535	-13	606	intron_retention	FALSE	canonical	3	184	junction_4	21.7383429809072	10	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGTGAACTGGATGCTA	NA	False	NA	NA	False	NA	NA	NA	24027058	24032180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612
63285	chr11	-	754	1	Intergenic	novelGene_2393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGGATTAAAAAATTCAAAG	6232	False	NA	NA	False	NA	NA	NA	69363934	69363180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_69363200_69363900
63288	chr7	-	1322	11	ISM	ENSMUSG00000003269.18	ENSMUST00000209245.2	1512	12	1168	-37	-16	7	3prime_fragment	FALSE	canonical	1	1	junction_4	137.283830074776	123	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTAATCCCTTGCGCCTG	4339	False	NA	NA	False	NA	NA	NA	45462558	45457025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432
63289	chr9	+	1640	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	37	6	-1	-6	multi-exon	TRUE	canonical	3	59	junction_6	22.3469853694417	73	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTCAGAGTAATAGCCTT	NA	False	NA	NA	False	NA	NA	NA	20779974	20785597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
63291	chr15	+	1786	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	34	10	34	-10	multi-exon	FALSE	canonical	3	134	junction_7	10.3844467687921	106	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCCAGACTCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	84565236	84587863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
63292	chr17	-	2125	16	NNC	ENSMUSG00000024170.16	novel	3530	21	NA	NA	-2595	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	24.894086758818	1	88	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACACACAGGCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	25329719	25318553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323744_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680
63293	chr12	+	1770	12	Antisense	novelGene_ENSMUSG00000113349.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAGACACATTGACACAG	NA	False	NA	NA	False	NA	NA	NA	36141844	36206768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_36142309_36142965_36143090_36154264_36154400_36157494_36157630_36159699_36159875_36163967_36164079_36168987_36169123_36170720_36170757_36173921_36174040_36179991_36180168_36184889_36184949_36206666
63294	chr11	+	2189	9	FSM	ENSMUSG00000020836.16	ENSMUST00000052515.12	1476	9	160	-873	85	-10	multi-exon	FALSE	canonical	1	1	junction_7	2.8613807855649	13	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAATGCATCTGGTTTGA	5548	False	NA	NA	False	NA	NA	NA	77354821	77361300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_77354937_77356491_77356615_77357020_77357151_77357243_77357426_77359091_77359197_77359286_77359433_77359735_77359794_77359882_77360114_77360201
63295	chr17	+	468	3	ISM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	-3	0	3	intron_retention	FALSE	canonical	3	5436	junction_1	2896.5	35	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	56920415	56921246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56920449_56920585_56920681_56920906
63297	chr1	+	2925	1	Intergenic	novelGene_477	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTAAGAACACGGACCTG	8214	False	NA	NA	False	NA	NA	NA	165731311	165734236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_165731300_165734200
63298	chr4	-	1014	10	NNC	ENSMUSG00000060288.14	novel	800	10	NA	NA	-8	-10	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	168.863521486699	1873	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATGCATGGGTTCTGT	9574	False	NA	NA	False	NA	NA	NA	119177751	119157216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177267_119177365_119177431_119177605
63299	chr18	+	1314	6	NNC	ENSMUSG00000042705.10	novel	1610	7	NA	NA	1534	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	668.238460431604	2	59	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATTTAAACTCAAGCG	NA	False	NA	NA	False	NA	NA	NA	47093480	47221050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_47093574_47096726_47096838_47100810_47100963_47219318_47219379_47220094_47220579_47220636
63301	chr3	+	1328	9	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	8	1035	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	19.8616307235836	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	135053826	135099879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135053884_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
63303	chr4	-	2651	1	NIC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	99	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	3	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACTGCCTTTCAAGTAT	NA	False	NA	NA	False	NA	NA	NA	135182275	135179624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135179600_135182300
63307	chr2	+	921	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	-5	3	-5	3	multi-exon	FALSE	canonical	3	304	junction_6	40.9691618442729	1822	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4588	False	NA	NA	False	NA	NA	NA	102904014	102922986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
63310	chr5	+	805	7	NNC	ENSMUSG00000029203.17	novel	4893	7	NA	NA	57	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	614.601429112125	9	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAAATACTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	65694761	65752488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749304_65751806_65751892_65752217
63312	chr1	+	875	1	ISM	ENSMUSG00000026604.18	ENSMUST00000097442.9	10746	19	147536	17	13145	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTTTTGAGAGAAAATAC	NA	False	NA	NA	False	NA	NA	NA	189608000	189608875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_189608000_189608900
63313	chr6	-	1575	2	ISM	ENSMUSG00000032641.19	ENSMUST00000165392.8	1643	4	9960	2	-23	-2	3prime_fragment	FALSE	canonical	3	94	junction_1	0	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGGTTCCTGTGGATTTT	NA	False	NA	NA	False	NA	NA	NA	134864818	134846057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_134847407_134864592
63314	chr4	+	742	7	ISM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	430	-1	121	1	3prime_fragment	FALSE	canonical	3	1282	junction_6	41.2542927059314	14	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAATGATGGAAGATGGC	NA	False	NA	NA	False	NA	NA	NA	125941147	125949326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
63315	chr4	-	3474	1	ISM	ENSMUSG00000028842.16	ENSMUST00000069097.13	15595	19	93338	13	14102	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	16	56	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAATCAAAAGTGCTTG	9940	False	NA	NA	False	NA	NA	NA	126230011	126226537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_126226500_126230000
63318	chr1	+	976	5	Antisense	novelGene_ENSMUSG00000101104.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCTGGCGCACGCAGGCT	5677	False	NA	NA	False	NA	NA	NA	44125772	44141598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_44126224_44127002_44127207_44127633_44127692_44139009_44139165_44141490
63319	chr2	+	1552	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	29	3623	2	11	multi-exon	FALSE	canonical	3	117	junction_7	14.82905345753	181	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGCTCTGCCTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	152511409	152546967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
63320	chr8	+	1522	7	NNC	ENSMUSG00000019433.10	novel	1522	7	NA	NA	-21	37	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	437.035245209761	5	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGAGATCCACCTGCATC	NA	False	NA	NA	False	NA	NA	NA	84379284	84391360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84388994_84389684_84389791_84390548_84390631_84390746
63321	chr9	+	505	3	NNC	ENSMUSG00000032383.8	novel	3305	4	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1268.5	25	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGGTGTGGGCTGTGTT	1564	False	NA	NA	False	NA	NA	NA	65967502	65973906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65967683_65968748_65968867_65973699
63322	chr11	-	843	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	146	-103	-25	103	multi-exon	FALSE	canonical	3	1870	junction_1	0	3074	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTAGAATTACTTTTTC	5648	False	NA	NA	False	NA	NA	NA	101169794	101168690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101169279_101169539
63323	chr4	+	1377	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	217	11	217	-11	multi-exon	FALSE	canonical	3	8029	junction_1	0	3237	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATGTTTCATTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	129407590	129409767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129407710_129408509
63324	chr17	+	1171	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-4	-1	combination_of_known_splicesites	FALSE	canonical	3	41	junction_2	31.418296818892	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTGTGGGTGTCCCCTC	NA	False	NA	NA	False	NA	NA	NA	95057535	95082556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_95057661_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
63326	chr8	+	928	5	FSM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	-34	1	0	-1	multi-exon	FALSE	canonical	3	392	junction_2	13.1909059582729	1756	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTAACGGCCGTGTGGGTG	251	False	NA	NA	False	NA	NA	NA	106052985	106055683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055325_106055403
63327	chr5	+	1168	4	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-106	94053	-67	0	5prime_fragment	FALSE	canonical	2	80	junction_2	5.90668171555645	152	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACCCTCCGCAAGA	1037	False	NA	NA	False	NA	NA	NA	108280673	108287441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779
63328	chr19	-	1887	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	14	4	1	-4	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGAGCTATCAGGAGTT	3643	False	NA	NA	False	NA	NA	NA	5660062	5653048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
63330	chr1	-	2138	13	NNC	ENSMUSG00000037375.17	novel	673	3	NA	NA	-67	20287	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	8.14452781524708	13	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTAGCATTCATTTTTC	NA	False	NA	NA	False	NA	NA	NA	192453367	192158731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_192159214_192170460_192170590_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
63332	chr2	+	2167	2	FSM	ENSMUSG00000085317.2	ENSMUST00000155884.2	674	2	182	-1675	182	1661	multi-exon	FALSE	canonical	3	8	junction_1	0	9	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAGCACCAAGGCCCAG	NA	False	NA	NA	False	NA	NA	NA	155433982	155436432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_155434089_155434371
63333	chr17	+	761	1	Intergenic	novelGene_125	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGAGTCATGTCTGAG	NA	False	NA	NA	False	NA	NA	NA	32047047	32047808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_32047000_32047800
63334	chr2	+	2649	12	Antisense	novelGene_ENSMUSG00000098972.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	144	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATCCCAGATCCTCCTGG	875	False	NA	NA	False	NA	NA	NA	32573224	32583638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_32573483_32574763_32574829_32575325_32575402_32575730_32575871_32576560_32576658_32576751_32576900_32577158_32577678_32577773_32577855_32577935_32578049_32581203_32581266_32582461_32582524_32582610
63335	chr8	-	865	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	-15	-1	4	-1	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	8982	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTCTCCTCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	123303644	123301374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
63336	chr13	-	1140	8	FSM	ENSMUSG00000003062.14	ENSMUST00000200323.3	1128	8	-29	17	-4	-17	multi-exon	FALSE	canonical	3	54	junction_1	267.855352374968	4	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGCTAAGATTCCAAGAGC	NA	False	NA	NA	False	NA	NA	NA	19579933	19549142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_19549516_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
63337	chr14	-	1132	6	ISM	ENSMUSG00000022075.8	ENSMUST00000022665.4	5322	10	9148	2294	4334	-2294	3prime_fragment	FALSE	canonical	3	88	junction_5	16.3511467487758	7	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGTGGGGAGCAGGAGA	NA	False	NA	NA	False	NA	NA	NA	70033937	70024732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70025185_70025306_70025413_70026080_70026170_70031352_70031504_70033348_70033468_70033722
63338	chrX	-	1562	5	NNC	ENSMUSG00000015668.14	novel	1497	6	NA	NA	54	9	intron_retention	FALSE	canonical	0	0	junction_2	245.508655651893	1	40	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGCTTGAGTGATACTAC	NA	False	NA	NA	False	NA	NA	NA	99669487	99666504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_99667250_99667467_99667567_99668155_99668196_99668400_99668485_99668893
63339	chr4	-	1549	10	NNC	ENSMUSG00000040972.9	novel	1979	10	NA	NA	-1778	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	25.987176324744	65	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAATGTCTGGCCCTATA	NA	False	NA	NA	False	NA	NA	NA	139975873	139754162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733_139764850_139794447_139794567_139834565_139834688_139884771_139884885_139975814
63340	chr11	-	633	1	Intergenic	novelGene_2229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	3025	False	NA	NA	False	NA	NA	NA	19922479	19921846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_19921800_19922500
63341	chr1	+	967	4	NNC	ENSMUSG00000039323.19	novel	906	3	NA	NA	-728	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	1672.39096970641	1558	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	562	False	NA	NA	False	NA	NA	NA	72862933	72891633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72863056_72888244_72888472_72888722_72888864_72891156
63342	chr12	-	1344	7	FSM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	41	0	41	0	multi-exon	FALSE	canonical	3	103	junction_1	5.61990510002912	487	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGCAGACTTAGA	NA	False	NA	NA	False	NA	NA	NA	72711642	72697126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117_72706271_72711402
63343	chr2	+	1344	2	NNC	ENSMUSG00000027067.17	novel	451	2	NA	NA	242	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAAACGATGTCCTTATG	NA	False	NA	NA	False	NA	NA	NA	84875940	84877446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84876788_84876949
63345	chr10	+	1245	5	FSM	ENSMUSG00000036764.13	ENSMUST00000043317.7	3025	5	20	1760	12	-11	multi-exon	TRUE	canonical	3	25	junction_2	1.58113883008419	95	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAAGTTCATTTATGCAT	NA	False	NA	NA	False	NA	NA	NA	63222361	63244595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_63222555_63231563_63231643_63233017_63233158_63242780_63242986_63243967
63346	chr3	-	2395	15	ISM	ENSMUSG00000032913.14	ENSMUST00000198332.2	3946	18	294	6734	99	-4655	5prime_fragment	FALSE	canonical	3	67	junction_7	11.442179398513	4	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTAAGTGGTACCCAGAT	NA	False	NA	NA	False	NA	NA	NA	104418878	104371177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104371625_104372802_104373085_104374358_104374680_104375800_104375965_104387097_104387167_104387424_104387497_104389170_104389252_104397845_104397990_104398183_104398328_104398726_104398871_104399004_104399149_104401373_104401509_104401946_104402022_104404804_104404871_104418771
63347	chr3	-	1223	3	ISM	ENSMUSG00000032913.14	ENSMUST00000200453.5	3179	8	17112	563	62	-5	3prime_fragment	FALSE	canonical	3	99	junction_1	5	15	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCATTGACCTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	104370077	104364448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104365281_104368716_104369005_104369974
63348	chrX	+	2732	17	Antisense	novelGene_ENSMUSG00000055691.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAATCGAAACCTCCGGCC	6275	False	NA	NA	False	NA	NA	NA	159594608	159777670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_159594711_159599885_159599987_159606969_159607095_159612538_159612643_159612914_159613019_159616863_159617835_159623294_159623443_159629932_159630016_159635137_159635327_159639350_159639440_159641793_159641856_159643929_159644051_159648912_159649050_159659518_159659564_159707446_159707482_159711419_159711651_159777585
63349	chrX	-	1706	3	FSM	ENSMUSG00000032750.14	ENSMUST00000127024.2	750	3	-14	-942	-14	3	multi-exon	FALSE	canonical	3	11	junction_2	2	65	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTTCTTAGTTTTTTTT	2165	False	NA	NA	False	NA	NA	NA	74012745	74010445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_74011592_74011767_74011897_74012314
63350	chr3	-	1400	5	NNC	ENSMUSG00000049940.8	novel	3007	3	NA	NA	38	1026	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	293.246483354873	5	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCGAGTCGGACTCTA	NA	False	NA	NA	False	NA	NA	NA	41037443	41021928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_41022734_41022792_41023160_41024714_41024871_41037029_41037078_41037419
63352	chr14	+	747	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	15	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2718.51521239076	1	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCATTTAAATCCACTTA	1115	False	NA	NA	False	NA	NA	NA	76082809	76085722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082897_76083056_76083119_76083642_76083834_76084133_76084230_76084673_76084801_76085538
63353	chr17	+	2468	14	NNC	ENSMUSG00000034709.9	novel	3141	22	NA	NA	39	1162	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	19.4911601872179	8	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTGTCCAGTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	88837682	88874380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88837747_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873375_88873450
63354	chr8	-	936	2	FSM	ENSMUSG00000045232.5	ENSMUST00000061923.5	634	2	-33	-269	-33	269	multi-exon	FALSE	canonical	3	87	junction_1	0	210	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCACGCGTGCGTATCAT	2815	False	NA	NA	False	NA	NA	NA	84771662	84769288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84769961_84771398
63355	chr8	+	1154	4	FSM	ENSMUSG00000095026.3	ENSMUST00000179347.3	1149	4	-5	0	-5	0	multi-exon	FALSE	canonical	2	5	junction_1	14.4299072146089	58	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTAAAGTCTCACGATT	NA	False	NA	NA	False	NA	NA	NA	71171186	71175281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71171282_71173068_71173378_71174425_71174587_71174692
63356	chr15	-	1028	7	NIC	ENSMUSG00000055762.17	novel	2152	10	NA	NA	14	0	intron_retention	FALSE	canonical	3	2715	junction_4	258.858820380703	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	75781126	75767338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768769_75772539_75772612_75772980_75773105_75781093
63357	chr11	-	1002	8	NNC	ENSMUSG00000018593.14	novel	2300	10	NA	NA	31	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	257.913290285946	13	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTCCTGTCCCGGGTGA	3889	False	NA	NA	False	NA	NA	NA	55310693	55285328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_55285665_55290026_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613
63358	chr9	+	2729	1	ISM	ENSMUSG00000063382.7	ENSMUST00000218183.2	6771	10	21871	50	9846	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	25	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTATTGACCTGTTTTAT	1083	False	NA	NA	False	NA	NA	NA	44420414	44423143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_44420400_44423100
63359	chr13	+	446	4	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-63	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8264.63954984662	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTGTCTTACTTCCT	NA	False	NA	NA	False	NA	NA	NA	91071272	91072849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_91071319_91071705_91071791_91072444_91072566_91072655
63360	chrX	-	1831	8	Antisense	novelGene_ENSMUSG00000088944.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGGCGCACGGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	55837942	55777111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_55777230_55799696_55799750_55833346_55833535_55834505_55834682_55835235_55835405_55835821_55836016_55836604_55836797_55837201
63361	chr19	-	1289	4	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1197	4	NA	NA	-14	1	multi-exon	FALSE	canonical	2	4	junction_1	26.9608770051883	12	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAATGTTATTTACCTGA	7800	False	NA	NA	False	NA	NA	NA	4861627	4840094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4840339_4842425_4842849_4843843_4844038_4861199
63363	chr15	+	809	1	Antisense	novelGene_ENSMUSG00000022387.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAGCTGGCTCAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	88585460	88586269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_88585500_88586300
63365	chr2	+	1157	1	Intergenic	novelGene_2557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACCAAGCAGGCAGCAC	NA	False	NA	NA	False	NA	NA	NA	5032145	5033302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_5032100_5033300
63366	chr19	+	375	2	Intergenic	novelGene_1238	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACATTGAA	5837	False	NA	NA	False	NA	NA	NA	25010495	25010952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_25010704_25010785
63367	chr9	-	723	3	FSM	ENSMUSG00000032112.11	ENSMUST00000217084.2	401	3	-18	-304	-18	-1	multi-exon	FALSE	canonical	3	32	junction_2	420.5	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTCTCTCCTAACTGA	2013	False	NA	NA	False	NA	NA	NA	44318357	44315056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44315396_44315630_44315758_44318100
63372	chr9	+	1296	4	ISM	ENSMUSG00000032336.18	ENSMUST00000176916.8	1401	9	14518	5078	-6576	-1	internal_fragment	FALSE	canonical	3	310	junction_1	26.5497436689865	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTGGAATAATACTCTTT	NA	False	NA	NA	False	NA	NA	NA	58550905	58560160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_58551086_58557779_58557802_58558540_58558616_58559141
63373	chr16	-	1458	4	NNC	ENSMUSG00000002844.10	novel	2966	4	NA	NA	26	-1465	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	591.765907170132	1	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTCAGTTGATGGGGT	NA	False	NA	NA	False	NA	NA	NA	38273018	38265856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38266467_38267609_38267971_38270486_38270846_38272890
63374	chr5	-	1817	1	Antisense	novelGene_ENSMUSG00000029313.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCCCACCCCTACCCACC	4032	False	NA	NA	False	NA	NA	NA	103966813	103964996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_103965000_103966800
63375	chr7	+	872	7	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1005.27084520652	1499	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8530	False	NA	NA	False	NA	NA	NA	27869133	27878694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27869244_27873928_27874089_27875379_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
63376	chr11	-	1886	3	Antisense	novelGene_ENSMUSG00000034757.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGATTCTGTCCAGGGTCC	5771	False	NA	NA	False	NA	NA	NA	102179506	102175826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_102176543_102178131_102178695_102178899
63378	chr16	-	2759	1	Intergenic	novelGene_3863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCACCCCAGAGCCCGAC	NA	False	NA	NA	False	NA	NA	NA	93622477	93619718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_93619700_93622500
63379	chr17	-	1489	8	FSM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	32	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	4.68606270481621	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGCATTTGTGAAGGC	1896	False	NA	NA	False	NA	NA	NA	25114029	25111125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
63380	chr8	+	1003	5	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	647.276795505601	2	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTGTGTTTCTTGGTGT	7317	False	NA	NA	False	NA	NA	NA	120680064	120684296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120680085_120681527_120681673_120682936_120683003_120683321_120683583_120683785
63381	chr5	+	1680	8	FSM	ENSMUSG00000029625.17	ENSMUST00000162244.8	1387	8	-6	-287	1	0	multi-exon	FALSE	canonical	3	381	junction_6	148.975001327096	990	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	NA	False	NA	NA	NA	145104057	145118850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115642_145115739_145117945
63382	chrX	+	1349	2	FSM	ENSMUSG00000046550.9	ENSMUST00000049999.9	1309	2	-42	2	10	-2	multi-exon	FALSE	canonical	3	21	junction_1	0	78	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTAGTCATCTAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	152615246	152617237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_152615545_152616186
63383	chr10	-	1643	11	NNC	ENSMUSG00000092190.2	novel	331	2	NA	NA	-1950	17494	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	93	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACACGCCCCGGAAGTGC	NA	False	NA	NA	False	NA	NA	NA	7638813	7601789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_7601884_7614482_7614662_7617168_7617329_7619317_7619498_7624537_7624661_7627306_7627412_7628505_7628666_7635459_7635588_7636497_7636632_7637012_7637133_7638553
63384	chr1	+	1214	10	Antisense	novelGene_ENSMUSG00000102733.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGGCTTTAATGGCCTTC	NA	False	NA	NA	False	NA	NA	NA	131238266	131283328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_131238437_131244866_131244973_131247262_131247398_131248174_131248250_131252824_131252907_131264107_131264215_131272087_131272282_131273496_131273604_131277192_131277365_131283262
63385	chr4	+	775	4	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	35	3184	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	245.582753647093	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGTGTTTCCAGAAAT	5307	False	NA	NA	False	NA	NA	NA	108436685	108449161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436773_108445872_108445979_108447849_108447975_108448704
63387	chr12	+	1893	14	NIC	ENSMUSG00000021262.16	novel	1870	13	NA	NA	35	-5	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	46.7253083228974	89	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCAAACTCAGGCTCTGG	NA	False	NA	NA	False	NA	NA	NA	108572059	108654767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_108572271_108614573_108614743_108619180_108619359_108639547_108639612_108640665_108640725_108641655_108641886_108642360_108642483_108646087_108646149_108647749_108647814_108649453_108649521_108649606_108649670_108652308_108652376_108652666_108652725_108654287
63389	chr7	-	2064	5	ISM	ENSMUSG00000032777.10	ENSMUST00000205659.2	6570	36	44603	15153	5918	5851	internal_fragment	FALSE	canonical	3	220	junction_3	3.63145976158349	2	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTTGACCAGCCCGACT	NA	False	NA	NA	False	NA	NA	NA	125262246	125255278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_125256801_125258228_125258387_125261430_125261620_125261748_125261828_125262130
63390	chr14	+	1890	5	ISM	ENSMUSG00000055717.14	ENSMUST00000159456.2	2152	6	21184	34	21184	-34	3prime_fragment	FALSE	canonical	3	51	junction_4	5.78791845139511	17	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAAATCTTTTTGATAG	NA	False	NA	NA	False	NA	NA	NA	103923117	103942204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_103923255_103925497_103925840_103932603_103932760_103939952_103940275_103941271
63391	chr3	+	1292	4	NIC	ENSMUSG00000027937.16	novel	1101	5	NA	NA	5	0	intron_retention	FALSE	canonical	3	314	junction_3	19.2527054375915	497	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	NA	False	NA	NA	NA	90138908	90143145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90139348_90139501_90139819_90141229_90141310_90142689
63392	chr1	-	1252	4	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	1954	6964	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_1	10.077477638554	669	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATACTTAGGAGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	132206195	132195489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_132196405_132202453_132202560_132202761_132202875_132206077
63393	chr1	-	2369	12	NNC	ENSMUSG00000016181.11	novel	5570	12	NA	NA	18	458	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	32.367211242805	1	123	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTAATTTTTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	192812497	192789602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_192790095_192796070_192796268_192796933_192797026_192797146_192797201_192799808_192800012_192800500_192800721_192802633_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811829_192812351
63394	chr2	+	701	7	NNC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_4	2828.35767520462	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGGCTTGGCTGCTTTTT	5797	False	NA	NA	False	NA	NA	NA	32851726	32854055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853561_32853596_32853752_32853866_32854002
63395	chr1	-	2297	11	NNC	ENSMUSG00000041926.16	novel	2288	11	NA	NA	27	-5	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	76.8923923415054	160	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGATAAGTTGGAGTTATA	NA	False	NA	NA	False	NA	NA	NA	135211795	135190454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194866_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
63396	chr13	-	1510	1	Antisense	novelGene_ENSMUSG00000037851.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAACTCCTGCCCTTTCCC	NA	False	NA	NA	False	NA	NA	NA	49882652	49881142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_49881100_49882700
63397	chr4	+	1038	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	13	-179	0	179	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	406	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCTCATGTGCTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	124978956	125003861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
63399	chrX	-	1151	2	Intergenic	novelGene_4038	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	73	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAAAAGCTTCTCCCG	NA	False	NA	NA	False	NA	NA	NA	116231214	116230005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116230767_116230824
63400	chr8	-	1047	1	Intergenic	novelGene_1640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATATTAAAATGCGTGCT	NA	False	NA	NA	False	NA	NA	NA	47643461	47642414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_47642400_47643500
63402	chr10	+	1511	8	FSM	ENSMUSG00000020109.14	ENSMUST00000142819.8	1495	8	-25	9	18	-9	multi-exon	FALSE	canonical	3	241	junction_6	22.8937207325413	38	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGCCCTTTCCCAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	59715414	59732588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171
63403	chr13	-	2944	1	Intergenic	novelGene_1498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAGGAGGATGGCAAAAA	NA	False	NA	NA	False	NA	NA	NA	89850303	89847359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_89847400_89850300
63404	chrX	-	802	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	-59	3	-16	-3	multi-exon	FALSE	canonical	3	109	junction_1	662	4866	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTTTCAGCCTCTAAAT	4477	False	NA	NA	False	NA	NA	NA	73397240	73395770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73396105_73396450_73396609_73396930
63405	chr8	+	1096	7	NIC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	34.0864912962436	26	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGACTAGTTTTGACTT	NA	False	NA	NA	False	NA	NA	NA	85635275	85638088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637474_85637995
63406	chr3	-	1540	9	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-4423	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	174.855654755573	1168	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGCACACTGATCCTGGA	NA	False	NA	NA	False	NA	NA	NA	95045745	95037042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95037195_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155_95041395_95041496_95042008_95045646
63407	chr9	+	869	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-26	-45	-26	45	mono-exon	FALSE	NA	NA	NA	NA	NA	13	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	84306010	84306879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
63408	chr18	+	1356	3	NNC	ENSMUSG00000057561.11	novel	2865	3	NA	NA	10163	-441	intron_retention	FALSE	canonical	0	0	junction_1	0	2	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGCTCTACACAGTGTA	235	False	NA	NA	False	NA	NA	NA	46741243	46742837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46741470_46741647_46742594_46742653
63409	chr13	+	1066	6	NNC	ENSMUSG00000015536.15	novel	1855	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	78.1050574546873	167	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCCTGTCTCCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	114954783	114965265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961898_114962692_114962818_114964824
63410	chr3	+	2150	8	FSM	ENSMUSG00000048655.18	ENSMUST00000061099.14	887	8	115	-1378	98	-3	multi-exon	FALSE	canonical	1	1	junction_2	1.55182578445717	20	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATAGGGCTTTAATGTAC	NA	False	NA	NA	False	NA	NA	NA	55047573	55080353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_55047594_55049661_55049742_55058132_55058244_55058325_55058367_55064453_55064553_55065965_55066020_55070741_55070819_55078685
63411	chr4	-	1999	7	ISM	ENSMUSG00000028538.13	ENSMUST00000097912.8	2143	11	170169	3	3735	-3	3prime_fragment	FALSE	canonical	3	57	junction_3	12.0473602456675	75	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATCTGGCCTCCTGTTG	3783	False	NA	NA	False	NA	NA	NA	117821910	117789359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526
63412	chr6	-	1328	1	Genic_Genomic	ENSMUSG00000072662.3	novel	NA	NA	NA	NA	11236	622	mono-exon	FALSE	NA	NA	NA	NA	NA	6	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACTAAAATAAACTTCTT	NA	False	NA	NA	False	NA	NA	NA	146977263	146975935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_146975900_146977300
63413	chr6	-	332	1	Antisense	novelGene_ENSMUSG00000040112.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTTATTTACATTTGT	NA	False	NA	NA	False	NA	NA	NA	146975416	146975084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_146975100_146975400
63414	chr16	+	752	5	NNC	ENSMUSG00000040785.20	novel	7415	46	NA	NA	-6166	-16645	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	765	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCGCATGCGCACCCTA	NA	False	NA	NA	False	NA	NA	NA	94165310	94171583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_94165647_94166213_94166333_94168419_94168493_94170947_94171054_94171465
63415	chr6	+	2122	16	NNC	ENSMUSG00000029913.15	novel	2155	15	NA	NA	-30	-6	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	50.1887991045368	1	85	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACAGAGTACGGCTCTT	NA	False	NA	NA	False	NA	NA	NA	65756047	65913351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65838071_65838124_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
63416	chr7	+	1136	8	NNC	ENSMUSG00000015165.17	novel	2180	12	NA	NA	218	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2025.10825107485	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGAAAATAAAACTATTTG	NA	False	NA	NA	False	NA	NA	NA	28514748	28521661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28514778_28517885_28517995_28518218_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
63417	chr19	-	1990	3	FSM	ENSMUSG00000054611.18	ENSMUST00000175978.2	767	3	-1197	-26	865	26	multi-exon	FALSE	canonical	3	139	junction_1	7.5	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTATCTTTGTTTATAT	3334	False	NA	NA	False	NA	NA	NA	4374028	4370178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4370396_4370925_4371085_4372414
63418	chr16	+	1350	11	FSM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	-8	483	-8	5	multi-exon	FALSE	canonical	3	136	junction_3	20.7113495455994	926	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCCTTGAGATGCTGT	NA	False	NA	NA	False	NA	NA	NA	8288643	8308065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
63419	chr11	-	1383	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-14	24	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGGGGCTGTGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	66943434	66928706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
63420	chr17	-	974	3	ISM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	1711	8	1711	-8	3prime_fragment	FALSE	canonical	3	280	junction_2	76	1504	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGACCGAATTCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	30844168	30841422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_30841669_30843173_30843588_30843854
63421	chr17	+	562	4	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	657	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1961.09770848426	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	6496	False	NA	NA	False	NA	NA	NA	35820374	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35820436_35820877_35821037_35821184_35821234_35821369
63422	chr1	-	1498	7	Antisense	novelGene_ENSMUSG00000026520.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGGCCCCAAGTATCC	NA	False	NA	NA	False	NA	NA	NA	180735630	180731899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180732095_180732307_180732385_180733441_180733601_180733725_180733948_180734157_180734250_180734354_180734517_180735039
63423	chr2	-	805	5	ISM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	3544	0	3521	0	3prime_fragment	FALSE	canonical	3	129	junction_1	182.151550912969	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACTGTTGTTACCATT	NA	False	NA	NA	False	NA	NA	NA	168793665	168776732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464
63424	chr17	+	720	6	FSM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	25	13	-23	-11	multi-exon	FALSE	canonical	3	1664	junction_1	167.935225607971	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTTTTAGTTAAAGCGT	NA	False	NA	NA	False	NA	NA	NA	28059085	28070926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
63425	chr7	-	1863	4	Fusion	ENSMUSG00000100826.7_ENSMUSG00000000948.17	novel	333	2	NA	NA	-2	-9	intron_retention	FALSE	canonical	1	1	junction_3	38.6810318143431	175	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCTTATGTCATAGTTT	NA	False	NA	NA	False	NA	NA	NA	59630682	59619333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_59620292_59621627_59621693_59623018_59623399_59630222
63427	chr17	-	2839	10	FSM	ENSMUSG00000033966.9	ENSMUST00000234349.2	1991	10	123	-971	123	-12	multi-exon	FALSE	canonical	1	1	junction_8	2.31474073955552	14	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCCTAACTTTTATT	NA	False	NA	NA	False	NA	NA	NA	80884790	80830990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80832816_80841226_80841362_80842822_80842880_80846932_80847016_80851048_80851247_80855120_80855212_80858254_80858328_80863735_80863858_80867778_80868004_80884760
63428	chr8	-	1062	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	-31	8	-31	-8	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	1962	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTTTACAGAGTTCTCG	NA	False	NA	NA	False	NA	NA	NA	41870142	41850503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
63429	chrX	-	1355	2	Intergenic	novelGene_4059	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACCACCTCCAGAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	138241300	138239646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_138240816_138241114
63430	chr7	+	2945	14	NIC	ENSMUSG00000040189.19	novel	2598	15	NA	NA	0	-30	intron_retention	FALSE	canonical	3	16	junction_6	3.49640559303493	40	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTATAGGAAATAAAGGTCA	3132	False	NA	NA	False	NA	NA	NA	45573638	45598350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
63431	chr11	-	915	5	NNC	ENSMUSG00000078812.11	novel	1409	6	NA	NA	-1034	139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	10815.7356199197	1	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCCAAACCCCTGTAGGG	8319	False	NA	NA	False	NA	NA	NA	69810164	69807717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808750_69808834_69809988
63432	chr13	-	981	7	FSM	ENSMUSG00000006715.12	ENSMUST00000175689.8	723	7	-28	-230	-28	-16	multi-exon	FALSE	canonical	3	19	junction_6	596.377513735125	92	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTGAACATTGTATGTC	NA	False	NA	NA	False	NA	NA	NA	24945487	24935843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945342
63433	chr1	-	742	5	NNC	ENSMUSG00000062580.10	novel	7280	6	NA	NA	41	270	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1123.97650664949	9	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCTTTGAAAGTTAGA	NA	False	NA	NA	False	NA	NA	NA	135241475	135229283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135229742_135232167_135232244_135236872_135236937_135237508_135237609_135241431
63434	chr2	-	2308	13	NNC	ENSMUSG00000027641.14	novel	2383	13	NA	NA	12	-24	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	43.50758235322	2	52	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTTGCTATGACCATTC	NA	False	NA	NA	False	NA	NA	NA	157046420	157016929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033851_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
63435	chr8	-	2502	15	NIC	ENSMUSG00000003575.14	novel	5683	14	NA	NA	-105	-3178	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	18.0759452289048	25	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCTGAGCGCTCTTGCA	5108	False	NA	NA	False	NA	NA	NA	70892334	70838182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844562_70844669_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
63436	chr6	+	305	1	Intergenic	novelGene_4117	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCACAAAGCAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	7712277	7712582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_7712300_7712600
63437	chr4	-	741	1	FSM	ENSMUSG00000047281.4	ENSMUST00000057311.4	1613	1	869	3	869	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTCTTCTTCAGTTATT	NA	False	NA	NA	False	NA	NA	NA	133328610	133327869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133327900_133328600
63439	chr9	+	1771	1	Intergenic	novelGene_1167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTGGAACTGGAGTCATA	1787	False	NA	NA	False	NA	NA	NA	110055101	110056872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_110055100_110056900
63440	chr1	+	936	9	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	-270	0	intron_retention	FALSE	canonical	3	1206	junction_4	1524.00762793367	52	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160863319	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160863375_160863552_160863815_160864118_160864150_160864389_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
63441	chr3	-	1953	6	NNC	ENSMUSG00000028195.5	novel	2019	5	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	18.0488226762856	1	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCTGAATGTATGTTGT	NA	False	NA	NA	False	NA	NA	NA	145355742	145352732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_145353152_145353221_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
63442	chr17	-	1546	8	FSM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	8	16	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.0698836361489	13	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	NA	False	NA	NA	NA	34219255	34215006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
63443	chr5	+	1943	15	NNC	ENSMUSG00000029095.18	novel	584	7	NA	NA	28088	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_12	32.4292794132911	51	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	NA	False	NA	NA	False	NA	NA	NA	35943482	36015530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35943629_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36013444_36013565_36014471_36014525_36015169
63444	chr15	+	723	1	NIC	ENSMUSG00000071711.13	novel	1279	3	NA	NA	57	185	mono-exon	FALSE	NA	NA	NA	NA	NA	38	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATACAGAGCAAAGGGATAA	NA	False	NA	NA	False	NA	NA	NA	78294238	78294961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78294200_78295000
63445	ERCC-00002	+	558	1	FSM	ERCC-00002A	DQ459430	1045	1	0	487	0	-487	mono-exon	FALSE	NA	NA	NA	NA	NA	220	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTGCTGCGGTTTCGC	NA	False	NA	NA	False	NA	NA	NA	0	558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00002_+_0_600
63447	chr17	-	541	4	ISM	ENSMUSG00000015451.17	ENSMUST00000015595.13	5357	42	13246	18	-453	-18	3prime_fragment	FALSE	canonical	1	1	junction_2	0.816496580927726	8	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCTTTTTGACAGCCAA	699	False	NA	NA	False	NA	NA	NA	35029184	35028088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_35028316_35028452_35028586_35028869_35028954_35029087
63449	chr15	-	1146	3	ISM	ENSMUSG00000034022.9	ENSMUST00000230822.2	1415	5	196	238	196	-224	internal_fragment	FALSE	canonical	3	587	junction_2	19.5	1	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCCAAGAAGATAGGTACC	NA	False	NA	NA	False	NA	NA	NA	76481559	76480240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76480899_76480976_76481294_76481388
63450	chr15	+	1539	1	ISM	ENSMUSG00000023033.15	ENSMUST00000082209.13	11293	27	169546	4162	24292	74	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAGGGCTAAAAAAAAAAAAA	1816	False	NA	NA	False	NA	NA	NA	100938109	100939648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_100938100_100939600
63453	chr5	+	2547	1	Intergenic	novelGene_716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTCTTCTCACAGTAAC	7962	False	NA	NA	False	NA	NA	NA	53817619	53820166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_53817600_53820200
63454	chr15	+	1992	12	NNC	ENSMUSG00000022550.19	novel	2058	14	NA	NA	3262	2	intron_retention	FALSE	non_canonical	0	0	junction_1	63.2460758917301	1	101	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATCGTTTTCTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	76471985	76480011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76472062_76473276_76473419_76477433_76477510_76477642_76477832_76477918_76478060_76478137_76478252_76478352_76478652_76478732_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
63455	chr1	+	1571	6	NNC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	81.3864853645862	1	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCTTTGCTTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	171097903	171104463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101663_171103815
63456	chr17	+	2354	7	Intergenic	novelGene_98	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCGGCCTAGCAGCCGGG	NA	False	NA	NA	False	NA	NA	NA	23974445	23990459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23974921_23975522_23975787_23979179_23979441_23979579_23980091_23981139_23981569_23981949_23982292_23990387
63457	chr2	-	1015	10	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1443.13855498663	3	57	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9646	False	NA	NA	False	NA	NA	NA	10085179	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060964_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
63459	chr8	+	937	7	NNC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	470.66466005238	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAATGTGTATGAGTATT	NA	False	NA	NA	False	NA	NA	NA	86026539	86034701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_86026622_86027737_86027868_86029990_86030081_86031837_86031951_86032845_86032948_86034214_86034458_86034524
63460	chr11	-	1433	11	NNC	ENSMUSG00000019373.12	novel	1646	12	NA	NA	17	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	303.301566102122	1	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTGTTTAACCCCTT	NA	False	NA	NA	False	NA	NA	NA	59730621	59708643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59708935_59709244_59709326_59710830_59710945_59712137_59712213_59715100_59715275_59717115_59717257_59718671_59718847_59720972_59721066_59723709_59723760_59723857_59723971_59730495
63461	chr17	-	1739	7	ISM	ENSMUSG00000015659.13	ENSMUST00000024570.6	2033	16	-4	19906	2	977	5prime_fragment	FALSE	canonical	3	21	junction_3	29.3792254644143	24	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGGTGGCATATTTGTG	2603	False	NA	NA	False	NA	NA	NA	6130006	6114246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_6115353_6116945_6117068_6117803_6117936_6121027_6121165_6122108_6122146_6124430_6124523_6129893
63462	chr4	-	1975	16	FSM	ENSMUSG00000078485.5	ENSMUST00000217885.2	1982	16	14	-7	-13	3	multi-exon	FALSE	canonical	2	4	junction_14	4.43721634461166	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAAGGTTGTCTCTAGA	NA	False	NA	NA	False	NA	NA	NA	156312970	156306115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_156306340_156306424_156306474_156306707_156306936_156307096_156307238_156307397_156307539_156307754_156307896_156308022_156308172_156308313_156308390_156308994_156309076_156309181_156309296_156309373_156309499_156309651_156309725_156309804_156309886_156309982_156310130_156312673_156312774_156312865
63463	chr18	-	1717	5	NNC	ENSMUSG00000033032.16	novel	2842	16	NA	NA	49235	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	5.2618912949623	58	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCAGAGGGTAGCTGGC	NA	False	NA	NA	False	NA	NA	NA	61870447	61863331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870253
63466	chr16	+	2140	9	NNC	ENSMUSG00000022961.19	novel	2449	11	NA	NA	4194	8653	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	74	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGAGGTTAAGAAAAGAGT	127	False	NA	-56	True	NA	NA	NA	91476013	91484762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91476915_91478044_91478257_91478981_91479182_91479403_91479508_91479629_91479707_91480517_91480704_91481192_91481368_91483053_91483259_91484682
63468	chr5	-	1441	6	NIC	ENSMUSG00000029207.17	novel	6526	17	NA	NA	-6	7350	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	32.5023076103836	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTATATTGTCAGATTTT	NA	False	NA	NA	False	NA	NA	NA	66776037	66549614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_66549679_66557418_66557628_66608810_66609627_66619440_66619510_66700804_66700961_66775910
63469	chr6	-	1073	1	ISM	ENSMUSG00000032718.5	ENSMUST00000047443.5	2376	4	22169	40	22169	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	8	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATTAAATATTTGAATAAA	NA	False	NA	NA	False	NA	NA	NA	134587282	134586209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_134586200_134587300
63470	chrX	-	1673	6	NIC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	-3	-2	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	11.7813411800185	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATAGAGAGATTATCCCTA	NA	False	NA	NA	False	NA	NA	NA	135939030	135903533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135933099_135933250_135938914
63471	chr11	-	1208	3	Antisense	novelGene_ENSMUSG00000057219.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAAGGCAGGCACGCCCC	NA	False	NA	NA	False	NA	NA	NA	115376687	115366544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_115366852_115366945_115367091_115375931
63472	chr12	-	1269	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	114.339407030122	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7681	False	NA	NA	False	NA	NA	NA	110807352	110774231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777046_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807261
63473	chr16	+	715	7	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-7789	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1829.26932134117	9	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTCTTACACTTGCAAA	NA	False	NA	NA	False	NA	NA	NA	84598505	84619771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84598527_84606261_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
63475	chr3	-	1497	1	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	1100	-2991	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATAACTTTGTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	107875499	107874002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_107874000_107875500
63477	chr8	-	1488	5	NNC	ENSMUSG00000031827.14	novel	1520	5	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	96.0608531088497	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAAATGAGTTGGGTTG	NA	False	NA	NA	False	NA	NA	NA	120567279	120535963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120536836_120536936_120537095_120549392_120549551_120566880_120566964_120567062
63479	chr17	+	687	2	NNC	ENSMUSG00000046711.17	novel	1681	5	NA	NA	6218	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGTCTCTGGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	27781886	27782639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27782141_27782206
63480	chr15	-	1100	3	NNC	ENSMUSG00000037458.16	novel	4871	12	NA	NA	0	-1217	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	256.5	22	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAATCTTTTGACTGAT	NA	False	NA	NA	False	NA	NA	NA	38519510	38489701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490336_38514745_38514854_38519152
63482	chr7	-	1799	1	Antisense	novelGene_ENSMUSG00000030759.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	81	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCCTCTTCAAAATGAA	NA	False	NA	NA	False	NA	NA	NA	113170070	113168271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_113168300_113170100
63483	chr13	+	1428	7	NNC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	420	-3366	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	644.385150528954	1	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCTCATCTCAGCAGGG	NA	False	NA	NA	False	NA	NA	NA	92491653	92522195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_92491853_92492164_92492208_92494434_92494541_92502186_92502304_92504711_92504809_92521232_92521455_92521551
63484	chr12	-	1139	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	13	0	13	0	multi-exon	FALSE	canonical	3	237	junction_1	0	1444	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6375	False	NA	NA	False	NA	NA	NA	102724046	102719533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_102720426_102723799
63485	chr2	-	613	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113397.9	580	4	-36	3	-10	-3	multi-exon	FALSE	canonical	3	66	junction_2	1606.82426612938	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGGTTCTGATCCTTG	NA	False	NA	NA	False	NA	NA	NA	32178053	32168830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32169144_32170720_32170816_32177608_32177658_32177897
63486	chr11	-	1967	8	FSM	ENSMUSG00000025158.8	ENSMUST00000026156.8	2118	8	149	2	127	-2	multi-exon	FALSE	canonical	3	122	junction_3	23.1137382947714	59	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTAGTGTGGCTCCTCTTG	NA	False	NA	NA	False	NA	NA	NA	120674884	120671575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
63487	chr9	-	1227	11	NNC	ENSMUSG00000061559.16	novel	1290	11	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	359.383917280671	1	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCAACCACCTGCATTTG	5458	False	NA	NA	False	NA	NA	NA	54641766	54624452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635021_54635449_54635560_54637917_54637946_54638670_54638722_54641652
63488	chrX	+	978	7	NNC	ENSMUSG00000001127.13	novel	826	8	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	124.993333155546	75	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAACTATCTTTGTCCTTC	6292	False	NA	NA	False	NA	NA	NA	20714800	20719137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834
63489	chr15	-	1606	6	NIC	ENSMUSG00000016637.8	novel	1013	7	NA	NA	236	-18	intron_retention	FALSE	canonical	0	0	junction_2	105.289315697273	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATGAGAAGAGCAACA	NA	False	NA	NA	False	NA	NA	NA	78058071	78043680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_78043909_78048389_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
63491	chr11	-	1452	3	NNC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	14910	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	95	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	59104078	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59103498_59103646_59103737_59103974
63492	chr2	+	1059	12	NNC	ENSMUSG00000027282.18	novel	1047	13	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1161.36975269693	2	45	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	184	False	NA	NA	False	NA	NA	NA	90677586	90695736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90677708_90679714_90679800_90679941_90680063_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691798_90693933_90694010_90695527
63493	chr19	-	823	8	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	49	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	1378.94109033426	199	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	NA	NA	NA	4095943	4090284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092566_4092672_4095923
63495	chrX	+	1063	1	NIC	ENSMUSG00000067860.12	novel	1951	3	NA	NA	9662	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTGATTATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	57086031	57087094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_57086000_57087100
63499	chr12	-	2663	1	ISM	ENSMUSG00000021188.15	ENSMUST00000021605.14	9873	21	76515	47	46855	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	23	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACC	6889	False	NA	36	True	NA	NA	NA	101803011	101800348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_101800300_101803000
63500	chr14	-	1691	12	FSM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	-8	-1	0	-1	multi-exon	FALSE	canonical	3	141	junction_8	15.4084875183551	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAATGTCTTTTTATTTT	242	False	NA	NA	False	NA	NA	NA	118370167	118349886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
63501	chr19	+	2714	2	FSM	ENSMUSG00000044345.10	ENSMUST00000061111.10	3066	2	347	5	39	-5	multi-exon	FALSE	canonical	3	88	junction_1	0	49	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGTTTGGGTCTCACG	NA	False	NA	NA	False	NA	NA	NA	42136185	42140137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_42137999_42139236
63502	chr11	-	773	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	-2	1222	-2	10	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATACTTCTTGCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	115915332	115914008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
63503	chr8	-	2033	5	ISM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	4262	-1	93	1	3prime_fragment	FALSE	canonical	3	422	junction_2	41.0022865216075	1	93	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGACTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	40960533	40945579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495
63504	chr5	+	1116	4	Intergenic	novelGene_972	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCACACTGGGCGTAGTT	NA	False	NA	NA	False	NA	NA	NA	147941086	147949136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_147941720_147943328_147943469_147943860_147944083_147949015
63506	chr14	-	1874	10	ISM	ENSMUSG00000022091.7	ENSMUST00000227259.2	2481	21	12408	-443	12408	-21	3prime_fragment	FALSE	canonical	3	14	junction_5	4.24554959434284	59	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACGTGGGTGCCAGGG	NA	False	NA	NA	False	NA	NA	NA	70429664	70417937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429534
63508	chr2	+	1576	13	NNC	ENSMUSG00000079110.13	novel	2622	21	NA	NA	-422	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.52762514801718	16	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATTCTCCTTATTAGCA	NA	False	NA	NA	False	NA	NA	NA	120321485	120335392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120321513_120322274_120322436_120325252_120325423_120326337_120326555_120327458_120327496_120332583_120332662_120332867_120332926_120333009_120333075_120333456_120333526_120333613_120333693_120333829_120333947_120334576_120334636_120334953
63510	chr18	-	1765	2	FSM	ENSMUSG00000038059.8	ENSMUST00000042710.8	1990	2	225	0	-186	0	multi-exon	FALSE	canonical	3	18	junction_1	0	104	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	60634834	60607262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_60608658_60634464
63511	chr3	-	1127	6	FSM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	-21	6	-21	-3	multi-exon	FALSE	canonical	3	160	junction_4	5.56417109729742	455	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCACGGAGTCTAATTGC	NA	False	NA	NA	False	NA	NA	NA	67371280	67365336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_67365661_67365926_67365990_67368254_67368392_67368644_67368823_67369691_67369755_67370918
63513	chr1	-	2002	1	Intergenic	novelGene_342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCATACCATATACTTGAA	7772	False	NA	NA	False	NA	NA	NA	16638042	16636040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_16636000_16638000
63514	chr5	-	678	5	Antisense	novelGene_ENSMUSG00000029522.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACAGCCAGCGCTCTTA	NA	False	NA	NA	False	NA	NA	NA	115612695	115602998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115603080_115604198_115604377_115608837_115608998_115610048_115610179_115612566
63516	chr8	-	671	3	NNC	ENSMUSG00000031754.11	novel	5010	7	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1113.5	46	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTGTATTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	94763642	94746080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94746333_94758949_94759131_94763404
63517	chr6	+	922	9	ISM	ENSMUSG00000033788.16	ENSMUST00000203695.3	6504	56	45087	136895	-40901	-38237	internal_fragment	TRUE	canonical	1	1	junction_7	1.93649167310371	1	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTGAGGAACAGGCATGG	NA	False	NA	NA	False	NA	NA	NA	84041453	84050944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_84041546_84041857_84042070_84043925_84044055_84044435_84044499_84045034_84045086_84047154_84047186_84047860_84047977_84049614_84049742_84050843
63518	chr4	-	1585	10	NNC	ENSMUSG00000028776.15	novel	1952	12	NA	NA	-318	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	81.0442646922419	6	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTCTGGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	130063595	130059396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130063501
63519	chr10	-	1190	11	FSM	ENSMUSG00000019792.9	ENSMUST00000215595.2	1576	11	13	373	-5	-373	multi-exon	FALSE	canonical	3	12	junction_8	70.5592658691968	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGGAGCGTTTTATAAAA	NA	False	NA	NA	False	NA	NA	NA	30476678	30411083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
63520	chr13	+	1895	2	FSM	ENSMUSG00000041995.9	ENSMUST00000045909.8	1894	2	-12	11	-12	-11	multi-exon	FALSE	canonical	3	65	junction_1	0	57	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATCTGCATCGGTGTT	NA	False	NA	NA	False	NA	NA	NA	95461732	95474338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_95461853_95472563
63521	chr5	+	1340	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	-53	-200	-53	1	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	97	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTGTCTGTCTGTC	1089	False	NA	NA	False	NA	NA	NA	31078880	31088590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
63522	chr16	+	1361	5	NNC	ENSMUSG00000022528.9	novel	1468	4	NA	NA	4	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	343.987645126973	306	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGCTTTTATGTCTTAG	NA	False	NA	NA	False	NA	NA	NA	29884161	29886602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29884517_29884648_29884745_29884980_29885069_29885689_29885889_29885979
63523	chr11	+	1245	3	Intergenic	novelGene_2531	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTGGGGATACACAGACC	6874	False	NA	NA	False	NA	NA	NA	115787649	115814720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_115788084_115807802_115807891_115813997
63524	chr10	+	2650	7	Antisense	novelGene_ENSMUSG00000019873.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	96	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTGTAGGGCGACAGCAG	NA	False	NA	NA	False	NA	NA	NA	66847288	66871721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_66848262_66848308_66848895_66848938_66849564_66850678_66850827_66857527_66857673_66870377_66870492_66871662
63526	chr9	+	1159	1	ISM	ENSMUSG00000066705.8	ENSMUST00000215281.2	2362	2	5394	354	5394	-354	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACCCAAAACAGTTGCT	6019	False	NA	NA	False	NA	NA	NA	45287133	45288292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_45287100_45288300
63527	chr1	+	1583	12	FSM	ENSMUSG00000026251.14	ENSMUST00000073252.9	2925	12	-8	1350	-8	-1349	multi-exon	FALSE	canonical	0	0	junction_4	1.67628081041689	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCTTCTCCTATAGCGA	NA	False	NA	NA	False	NA	NA	NA	87118350	87126442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87118465_87118696_87118852_87119241_87119287_87119935_87120046_87120207_87120364_87120567_87120678_87122521_87122723_87123206_87123319_87123404_87123520_87125004_87125210_87125296_87125416_87126301
63535	chr17	+	1224	9	NIC	ENSMUSG00000034729.17	novel	1017	7	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	774.837634201515	84	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTGGTTTTGTTTA	7167	False	NA	NA	False	NA	NA	NA	47679841	47689604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_47679880_47680953_47681084_47681188_47681296_47683351_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
63538	chr11	+	875	4	NNC	ENSMUSG00000000581.9	novel	2981	5	NA	NA	2	610	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	342.208838122116	26	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGTTGTATGTCCTGACT	7333	False	NA	NA	False	NA	NA	NA	17207595	17217234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_17207659_17212647_17212795_17213608_17213633_17216593
63541	chr3	+	539	1	ISM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	51708	0	802	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	8626127	8626666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_8626100_8626700
63542	chr4	+	1318	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	53	30	22	-30	multi-exon	FALSE	canonical	3	2684	junction_8	233.065676097962	1	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGTATAATAAATTTTTATA	2384	False	NA	NA	False	NA	NA	NA	132262913	132281023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
63543	chr3	-	850	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	109	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3839.11278292264	2	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCGTTTGCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	86049900	86045256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045418_86045789_86045888_86046342_86046556_86048545_86048734_86049004_86049109_86049814
63544	chr13	-	1781	8	NNC	ENSMUSG00000021557.16	novel	4143	25	NA	NA	-3290	3	intron_retention	FALSE	canonical	2	7	junction_7	9.31095470674304	2	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTTGTCATCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	59625685	59597347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59598129_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59625604
63545	chr4	+	1968	7	NNC	ENSMUSG00000028779.17	novel	1915	6	NA	NA	71	-44	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	104.338258669686	1219	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTGTCAATAAAAGAAAGA	4351	False	NA	NA	False	NA	NA	NA	129996421	130021883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129996521_130000150_130000320_130001155_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
63546	chr15	-	977	6	NIC	ENSMUSG00000016637.8	novel	760	7	NA	NA	299	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	140.252629208867	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGAGCAACAACGGCTT	NA	False	NA	NA	False	NA	NA	NA	78052184	78043673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051652_78052112
63547	chr11	+	1539	11	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	242	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	219.017099789035	1	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1472	False	NA	NA	False	NA	NA	NA	101011005	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015939_101016039_101016191_101016857
63549	chr7	-	1123	2	NIC	ENSMUSG00000051811.15	novel	391	3	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	803	junction_1	0	164	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCTAATATTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	4756025	4754799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_4755849_4755951
63550	chr11	+	1220	10	Antisense	novelGene_ENSMUSG00000020462.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAACGTACGCAGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	29171816	29197291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_29171985_29172432_29172584_29172743_29172887_29175858_29175960_29179907_29179960_29180585_29180672_29184355_29184475_29194060_29194159_29195083_29195175_29197080
63551	chr12	-	987	4	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	917.824601980139	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCGTGCTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	105188999	105183011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183283_105183623_105183961_105184917_105185089_105188791
63552	chr1	+	1968	1	FSM	ENSMUSG00000063659.12	ENSMUST00000077225.8	4944	1	2970	6	2970	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	63	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAATTCCTTGTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	177276356	177278324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_177276400_177278300
63553	chr13	+	1280	5	FSM	ENSMUSG00000004341.9	ENSMUST00000004453.9	1340	5	61	-1	61	1	multi-exon	FALSE	canonical	3	9	junction_2	5.71729831301464	71	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGACTCTGAGTGATGTT	986	False	NA	NA	False	NA	NA	NA	21496355	21503795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046
63554	chr18	-	858	2	Intergenic	novelGene_4568	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	1	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTAGTGGCCTGGAGTTT	NA	False	NA	NA	False	NA	NA	NA	75497144	75492862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_75493577_75497000
63555	chr11	+	995	5	NNC	ENSMUSG00000018666.14	novel	2377	5	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_4	247.637335634189	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	96679981	96698975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96698628
63558	chr7	+	1557	4	NNC	ENSMUSG00000025470.12	novel	1757	5	NA	NA	3	-6	intron_retention	FALSE	canonical	3	44	junction_3	148.775744737582	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGATGGCATCTGTTC	NA	False	NA	NA	False	NA	NA	NA	139616785	139620506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139616807_139617132_139617335_139617428_139617495_139619238
63559	chr19	+	1553	10	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	-43	-8	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.54062594260057	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGCTATAAAGAATTCTAC	7995	False	NA	NA	False	NA	NA	NA	6234374	6274241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6234613_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
63560	chr14	-	2422	12	Antisense	novelGene_ENSMUSG00000021747.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGGACAAATACAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	13997178	13810329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_13810385_13825303_13825377_13891310_13891426_13911582_13911738_13933115_13933254_13951004_13951142_13951778_13951932_13953202_13953322_13954396_13954518_13958576_13958920_13987160_13987356_13996360
63562	chr11	+	1167	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	271.902188295718	1212	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	96679988	96698975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697621_96698628
63563	chr14	-	687	2	ISM	ENSMUSG00000021273.12	ENSMUST00000238526.2	3048	7	13645	1263	13645	-1260	3prime_fragment	FALSE	canonical	3	821	junction_1	0	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAAGCAACTGGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	63388729	63383861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63384418_63388598
63564	chr6	-	911	3	FSM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	-48	0	-48	0	multi-exon	FALSE	canonical	3	807	junction_1	71.5	4573	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTCAGTCATTTGT	8895	False	NA	NA	False	NA	NA	NA	124718385	124716145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124716377_124717481_124717659_124717882
63566	chr11	+	1793	4	FSM	ENSMUSG00000020453.18	ENSMUST00000101644.10	1853	4	60	0	25	0	multi-exon	FALSE	canonical	3	21	junction_1	164.248456782874	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5240	False	NA	NA	False	NA	NA	NA	3239226	3259083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3239348_3243279_3243344_3249033_3249206_3257647
63567	chr14	-	2257	17	NNC	ENSMUSG00000021884.19	novel	2644	17	NA	NA	2	110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	13.265910259006	1	56	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAACTTTGGTTTTGTTT	6654	False	NA	NA	False	NA	NA	NA	31363212	31329815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362538_31362745
63568	chr1	-	1598	1	ISM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	9681	14	9681	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	51	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTTCCTGTGTGGAGG	7179	False	NA	NA	False	NA	NA	NA	184605734	184604136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_184604100_184605700
63569	chr16	-	947	2	NNC	ENSMUSG00000040681.17	novel	801	2	NA	NA	23	611	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCCTCGACCAATAAAATC	NA	False	NA	NA	False	NA	NA	NA	95928906	95922822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923616_95928752
63570	chr4	+	548	5	NNC	ENSMUSG00000063524.14	novel	773	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6892.34794899387	243	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150321696	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326621_150333115
63572	chr17	-	644	5	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	3811	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2117.37790379989	2	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	NA	False	NA	NA	NA	15714749	15696220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15696468_15697576_15697684_15710417_15710554_15713359_15713442_15714677
63573	chr13	-	1379	11	ISM	ENSMUSG00000021646.10	ENSMUST00000022148.7	2123	17	26	15067	5	-5109	5prime_fragment	FALSE	canonical	3	265	junction_5	19.3258893715141	2	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTATGGCGTAGACTCTT	695	False	NA	NA	False	NA	NA	NA	100152121	100100107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
63578	chr5	-	2371	2	NNC	ENSMUSG00000040570.15	novel	3677	10	NA	NA	128047	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	20	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCATACAGTACTGGTCT	NA	False	NA	NA	False	NA	NA	NA	8544905	8540343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_8542590_8544780
63579	chr15	-	1877	1	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	252	-303	mono-exon	FALSE	NA	NA	NA	NA	NA	2	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGCAATTTCGGGATAT	3165	False	NA	NA	False	NA	NA	NA	77854593	77852716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77852700_77854600
63581	chr15	-	1463	4	FSM	ENSMUSG00000022420.17	ENSMUST00000023055.8	1472	4	9	0	9	0	multi-exon	FALSE	canonical	3	65	junction_3	38.6091526281874	192	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	252	False	NA	NA	False	NA	NA	NA	79658659	79645653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79646727_79647710_79647795_79649016_79649223_79658559
63582	chr18	+	742	4	FSM	ENSMUSG00000057130.13	ENSMUST00000025464.8	517	4	104	-329	73	193	multi-exon	FALSE	canonical	3	221	junction_1	1036.43309265748	110	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	NA	False	NA	NA	NA	80250181	80265746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80250277_80250368_80250559_80261918_80262023_80265393
63583	chr12	-	3228	10	Antisense	novelGene_ENSMUSG00000004151.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	120	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGGGAAACAGCAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	38917596	38833656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_38833807_38843173_38843224_38877776_38877904_38881076_38881266_38885064_38885311_38902213_38902287_38904156_38904227_38906938_38907108_38911283_38911386_38915544
63588	chr2	+	1215	1	Antisense	novelGene_ENSMUSG00000009207.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTGCATTCTTACTGAG	NA	False	NA	NA	False	NA	NA	NA	74350686	74351901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_74350700_74351900
63589	chr11	-	2004	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	38	8	38	-8	multi-exon	FALSE	canonical	1	33	junction_5	23.2491039253846	42	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATGCATTTGTGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	109502220	109464164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
63590	chrX	-	1704	4	FSM	ENSMUSG00000043453.6	ENSMUST00000088481.5	1821	4	19	98	19	-98	multi-exon	FALSE	canonical	1	1	junction_3	0.471404520791032	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATAATTAACAATTGTT	NA	False	NA	NA	False	NA	NA	NA	71430445	71425573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_71427050_71427946_71428036_71428780_71428874_71430399
63591	chr13	+	453	1	Intergenic	novelGene_1419	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAATTCATATATCATAG	NA	False	NA	NA	False	NA	NA	NA	65779403	65779856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65779400_65779900
63592	chr5	-	926	1	Intergenic	novelGene_976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGACTCTTGGCTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	149155312	149154386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_149154400_149155300
63593	chr19	+	846	5	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	-20	25304	9	-25304	5prime_fragment	FALSE	canonical	0	0	junction_1	16.7089048115069	41	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTATACTGTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	58500432	58516156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703
63594	chr17	+	1183	1	ISM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	9115	2020	6592	-2020	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATCCAGTGGTATGCTG	5606	False	NA	NA	False	NA	NA	NA	13235818	13237001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_13235800_13237000
63595	chr6	+	745	1	Antisense	novelGene_ENSMUSG00000084319.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGCGCGGAAGCGAGCT	NA	False	NA	NA	False	NA	NA	NA	99854579	99855324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_99854600_99855300
63596	chr7	-	1210	4	NNC	ENSMUSG00000044709.7	novel	613	2	NA	NA	-3034	-11967	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	38	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGACATGGGGAGAGGGC	5491	False	NA	NA	False	NA	NA	NA	19314554	19311315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19311553_19311740_19311883_19313534_19313964_19314152
63597	chr2	-	1155	1	Antisense	novelGene_ENSMUSG00000008200.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGCAAACCAGAACTACACA	NA	False	NA	NA	False	NA	NA	NA	90581456	90580301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_90580300_90581500
63598	chr1	+	425	2	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	576	3508	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	0	218	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAGTTCAAAATCTGAG	NA	False	NA	NA	False	NA	NA	NA	152969801	152973851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_152969860_152973484
63600	chr2	+	2002	3	FSM	ENSMUSG00000027245.12	ENSMUST00000125849.8	1349	3	-779	126	-779	4	multi-exon	FALSE	canonical	3	4276	junction_1	147	32	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTCTTCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	121286394	121288791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121288183_121288472_121288525_121288629
63601	chr8	+	2766	2	FSM	ENSMUSG00000025519.6	ENSMUST00000183187.2	5485	2	-39	2758	-36	1801	multi-exon	FALSE	canonical	3	13	junction_1	0	16	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTCTGTTTTTCATGA	NA	False	NA	NA	False	NA	NA	NA	66964371	66968229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_66966353_66967444
63602	chr12	-	701	1	FSM	ENSMUSG00000113137.2	ENSMUST00000220953.2	450	1	-1	-250	-1	250	mono-exon	FALSE	NA	NA	NA	NA	NA	126	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGTTCTTCAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	55114987	55114286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_55114300_55115000
63605	chr1	+	487	1	ISM	ENSMUSG00000057715.14	ENSMUST00000171690.9	6158	8	183985	3235	18784	-1417	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAATGTGTCATGCATG	NA	False	NA	NA	False	NA	NA	NA	11668313	11668800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_11668300_11668800
63606	chr14	+	1823	9	ISM	ENSMUSG00000039599.17	ENSMUST00000225942.2	2151	14	89	7004	36	-15	5prime_fragment	FALSE	canonical	3	87	junction_7	68.9373583407429	18	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCATACACCAACACATC	NA	False	NA	NA	False	NA	NA	NA	20398378	20426340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577
63607	chr9	+	2737	9	FSM	ENSMUSG00000031994.14	ENSMUST00000068135.13	3631	9	877	17	-19	-17	multi-exon	TRUE	canonical	3	22	junction_2	5.53257399408268	24	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGATCTTACACCAATGA	NA	False	NA	NA	False	NA	NA	NA	30854734	30874135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_30854898_30862561_30862802_30863890_30864027_30864651_30864820_30865762_30866068_30867791_30867976_30870209_30870383_30870497_30870674_30872943
63608	chr4	-	796	4	ISM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	24855	5	-340	-5	3prime_fragment	FALSE	canonical	3	1544	junction_1	126.071408336704	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	129411651	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585
63609	chr18	-	2137	1	FSM	ENSMUSG00000045730.5	ENSMUST00000053640.5	2144	1	7	0	7	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATTGCACCCGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	62313023	62310886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_62310900_62313000
63610	chr17	+	634	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-16	351	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3613.26282465032	5	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6869174	6875299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899_6875033_6875103
63611	chr19	+	2981	23	FSM	ENSMUSG00000025225.16	ENSMUST00000073116.13	2979	23	-2	0	-2	0	multi-exon	FALSE	canonical	3	47	junction_13	7.7085334275273	27	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAACCCCAATGTGCTG	NA	False	NA	NA	False	NA	NA	NA	46293180	46300461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
63612	chr2	-	3154	1	Intergenic	novelGene_2639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTTAGTGTTATGTCTC	NA	False	NA	NA	False	NA	NA	NA	63378756	63375602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_63375600_63378800
63613	chr6	+	1616	4	FSM	ENSMUSG00000039419.18	ENSMUST00000199100.5	6279	4	-1	4664	-1	-25	multi-exon	FALSE	canonical	3	21	junction_1	8.01387685344754	162	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATACTTTCTAGTGAATG	NA	False	NA	NA	False	NA	NA	NA	47221319	47276479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_47221484_47248073_47248314_47273652_47273734_47275348
63614	chr17	+	1237	7	NNC	ENSMUSG00000067389.4	novel	811	2	NA	NA	-912	1176	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAGCAAAGACAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	45896133	45900479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45896703_45897017_45897228_45898156_45898240_45898487_45898597_45899927_45899989_45900131_45900232_45900374
63615	chr11	+	819	5	FSM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	-68	0	-68	0	multi-exon	FALSE	canonical	3	239	junction_1	97.8682149627753	1407	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	69214737	69216619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69214893_69214983_69215083_69215220_69215292_69215649_69215789_69216264
63616	chr18	-	3703	20	Antisense	novelGene_ENSMUSG00000039840.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTACCTCCGCGACGTCG	NA	False	NA	NA	False	NA	NA	NA	78026805	77981712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77981773_77991362_77992296_77994361_77994606_77997373_77997510_77997944_77998054_78000619_78000726_78002242_78002358_78002692_78002842_78003917_78004076_78005593_78005758_78008117_78008264_78011748_78011892_78015730_78015882_78018198_78018311_78019048_78019306_78022335_78022480_78024155_78024304_78024516_78024715_78025524_78025634_78026684
63617	chr19	-	1989	8	FSM	ENSMUSG00000025221.17	ENSMUST00000086993.11	1005	8	11	-995	11	-8	multi-exon	FALSE	canonical	3	6	junction_7	6.66394502268034	46	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACAGCCCGCTGTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	45800719	45780792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45800636
63618	chr3	-	2504	21	FSM	ENSMUSG00000059834.13	ENSMUST00000026866.15	3005	21	472	29	-14	-29	multi-exon	FALSE	canonical	3	23	junction_17	7.74919350642375	24	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGTAATAAATTATGTAT	NA	False	NA	NA	False	NA	NA	NA	41696477	41581183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_41581670_41583952_41584049_41586087_41586167_41601879_41602077_41611638_41611832_41616006_41616153_41618386_41618462_41621545_41621618_41625819_41625919_41629762_41629941_41636130_41636223_41636716_41636808_41657820_41657892_41663903_41663970_41665517_41665641_41672163_41672300_41681527_41681584_41684725_41684799_41685295_41685355_41688602_41688671_41696429
63620	chr15	-	1180	9	NIC	ENSMUSG00000022433.22	novel	3174	9	NA	NA	20	-258	combination_of_known_junctions	FALSE	canonical	3	24	junction_8	248.845302095499	10	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGGAAGCATCCTGCGGA	8039	False	NA	NA	False	NA	NA	NA	79326317	79308101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79308256_79308351_79308456_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326292
63623	chr7	+	1670	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	89	2896	38	-6	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGCCCTTGTGTAGAGT	NA	False	NA	NA	False	NA	NA	NA	139705658	139714241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
63625	chr8	+	2461	3	ISM	ENSMUSG00000031480.16	ENSMUST00000162447.2	3273	4	15895	484	15895	-484	3prime_fragment	FALSE	canonical	2	2	junction_2	1	15	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGGCAAATTTATGATG	NA	False	NA	NA	False	NA	NA	NA	22733272	22749909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_22733973_22742168_22742328_22748307
63626	chr1	+	3053	1	NIC	ENSMUSG00000039354.17	novel	828	6	NA	NA	60	372	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	104	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGCCGTGTTTAAGT	NA	False	NA	NA	False	NA	NA	NA	72622469	72625522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_72622500_72625500
63629	chrX	-	945	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2669	-3	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	9.28559218478941	251	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCCTCACTCTTGGCA	NA	False	NA	NA	False	NA	NA	NA	7882062	7870441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7870742_7871941_7872098_7881456_7881595_7881711
63630	chrX	+	1469	11	NNC	ENSMUSG00000039382.13	novel	955	8	NA	NA	173	-12	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	65.4110082478477	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCCTTTGAGTGGCATT	4889	False	NA	NA	False	NA	NA	NA	7589338	7594409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7589401_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
63631	chr18	-	1978	16	NNC	ENSMUSG00000025420.14	novel	1942	16	NA	NA	14005	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	8.22732574345327	28	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTCCTGTGTTTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	77120934	77064847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77065222_77066125_77066229_77067694_77067858_77082089_77082201_77085294_77085387_77090126_77090246_77090432_77090497_77092418_77092518_77095203_77095282_77095480_77095580_77098642_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
63632	chr6	+	738	4	NNC	ENSMUSG00000046323.9	novel	833	4	NA	NA	16	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1000.23008464164	38	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACGTTCTAATTTCCAGA	696	False	NA	NA	False	NA	NA	NA	122603384	122607185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122603570_122605535_122605769_122606259_122606289_122606894
63634	chr11	-	1480	5	NIC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	3637	2	intron_retention	FALSE	canonical	3	33	junction_4	8.95474734428616	5	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAGAGTTAGCACAGAGC	NA	False	NA	NA	False	NA	NA	NA	72248485	72235552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72246165_72248310
63635	chr8	+	700	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	38	7	-1	-7	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGGTGTCTGTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	121394998	121400939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
63636	chr1	+	1857	1	Intergenic	novelGene_335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACGCTGAGGCAAAAGG	NA	False	NA	NA	False	NA	NA	NA	9771271	9773128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_9771300_9773100
63638	chr2	+	2024	12	FSM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	72	371	72	-3	multi-exon	FALSE	canonical	3	214	junction_9	24.2330284822489	90	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACCTTGTCTCCGCTCACT	NA	False	NA	NA	False	NA	NA	NA	173952213	173964492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962461_173962740_173962918_173963271_173963383_173963883
63639	chr7	+	900	4	NIC	ENSMUSG00000006333.15	novel	751	5	NA	NA	-2	-2	intron_retention	FALSE	canonical	3	8457	junction_1	3084.90619342343	22	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTTATTGGTGTGCCT	1307	False	NA	NA	False	NA	NA	NA	3707034	3709891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3707064_3707325_3707768_3708731_3708919_3709649
63640	chr17	-	893	4	NNC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	14	66	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1036.58316919901	31	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGATGATGCTGACTCAA	3418	False	NA	NA	False	NA	NA	NA	71297511	71280954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71281492_71282453_71282575_71284050_71284242_71297467
63641	chr15	-	1700	14	NNC	ENSMUSG00000009733.10	novel	3302	16	NA	NA	6	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	50.6625919673685	2	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGAGAGTTTTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	100449856	100400685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100401047_100409621_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415834_100415920_100416450_100416562_100420269_100420377_100423447_100423554_100425757_100425835_100426278_100426428_100449205_100449388_100449790
63642	chr11	-	1513	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	-2	33	-2	-33	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	186	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAGGTCAGTAAATTCAA	NA	False	NA	NA	False	NA	NA	NA	17161570	17153230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
63643	chr3	+	2743	4	FSM	ENSMUSG00000027784.11	ENSMUST00000029355.9	9417	4	1042	5632	1042	2071	multi-exon	FALSE	canonical	3	48	junction_1	7.40870359029762	22	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGTTTGGGTGAAGAA	2816	False	NA	NA	False	NA	NA	NA	69225235	69462503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_69225299_69405103_69405279_69456658_69456821_69460160
63644	chr11	+	197	1	Intergenic	novelGene_2510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCACAAAGAAAAGAGAACTC	NA	False	NA	NA	False	NA	NA	NA	108902474	108902671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902500_108902700
63645	chr4	-	3042	1	NIC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	608	2370	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	52	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGTTCACCACAGGAAAAT	NA	False	NA	NA	False	NA	NA	NA	63298832	63295790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_63295800_63298800
63647	chr7	-	2258	6	ISM	ENSMUSG00000006019.16	ENSMUST00000094816.3	4073	17	2809	13292	2809	-4527	internal_fragment	FALSE	canonical	3	60	junction_2	7.61577310586391	2	59	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAAGGATCCCTTCCCCC	6716	False	NA	NA	False	NA	NA	NA	15953109	15944440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_15944614_15946733_15946952_15948266_15948370_15949148_15949404_15950143_15950456_15951912
63648	chr17	-	728	7	NIC	ENSMUSG00000024099.16	novel	1697	8	NA	NA	-5	3	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	1583.3928146722	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCTTTATTCGGTTTGCT	5511	False	NA	NA	False	NA	NA	NA	66408495	66386432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_66386583_66387805_66387883_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
63649	chr10	-	3357	1	ISM	ENSMUSG00000020121.16	ENSMUST00000020322.12	7711	22	262956	5	22752	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACGCCTTTGTCTGCTC	8541	False	NA	-43	True	NA	NA	NA	121620257	121616900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_121616900_121620300
63650	chr1	+	1776	3	ISM	ENSMUSG00000041498.14	ENSMUST00000187963.7	4102	15	12	24192	12	3	5prime_fragment	FALSE	canonical	3	50	junction_1	8	27	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGCTGTGATGTT	NA	False	NA	NA	False	NA	NA	NA	136394092	136399462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_136394137_136395585_136396913_136399057
63651	chr7	-	1680	4	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	8451	-3	-35	-3	intron_retention	FALSE	canonical	3	457	junction_2	24.4994331000173	22	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCATCCCGTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	30136463	30134409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397
63652	chr15	+	1595	3	ISM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	1092	5	1092	-5	3prime_fragment	FALSE	canonical	3	856	junction_1	44	360	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATAACTTCTGTTTATT	NA	False	NA	NA	False	NA	NA	NA	88747480	88749924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_88747752_88748518_88748696_88748777
63653	chr11	-	2977	17	NNC	ENSMUSG00000052921.14	novel	4372	17	NA	NA	81	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.01121474743001	8	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTGGTCTAAAAACACAG	6066	False	NA	NA	False	NA	NA	NA	68848225	68833982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_68834342_68837191_68837297_68837386_68837470_68837809_68837963_68838061_68838223_68838401_68838495_68838591_68838667_68840796_68840927_68841825_68841979_68842157_68842319_68842444_68842657_68842736_68842796_68844312_68844368_68844637_68844989_68845243_68845900_68847671_68847804_68848186
63654	chr15	+	1995	9	ISM	ENSMUSG00000023032.13	ENSMUST00000162049.2	3532	24	21391	3	-103	-3	3prime_fragment	FALSE	canonical	3	30	junction_3	8.72406871820712	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGACATTTTCTCTGATA	4713	False	NA	NA	False	NA	NA	NA	100700525	100713813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_100701230_100704130_100704293_100705081_100705334_100707175_100707245_100708474_100708649_100709423_100709556_100710987_100711080_100712330_100712427_100713499
63656	chr13	+	797	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-10	-21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7952	False	NA	NA	False	NA	NA	NA	74554517	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74555259_74555388
63657	chr3	-	1787	9	NNC	ENSMUSG00000037111.10	novel	7411	8	NA	NA	229	-5322	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.79422863405995	1	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCATTTGTAGCAGCGTA	NA	False	NA	NA	False	NA	NA	NA	51468071	51428061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_51428737_51428809_51428909_51434265_51434424_51437491_51437610_51440395_51440478_51443886_51444077_51450052_51450255_51457655_51457786_51467938
63658	chr11	-	376	2	Genic_Genomic	ENSMUSG00000081604.6	novel	411	1	NA	NA	-39	-28	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTTTTCCAGAAGCTTC	NA	False	NA	NA	False	NA	NA	NA	93928493	93928071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_93928283_93928328
63659	chr4	-	1095	1	NIC	ENSMUSG00000028857.17	novel	1484	6	NA	NA	-2	-5782	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAGGCAAGCAGATGTCT	NA	False	NA	NA	False	NA	NA	NA	133005083	133003988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133004000_133005100
63660	chr4	-	1745	2	Intergenic	novelGene_1977	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	51	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACTTCATCTGAAACAAG	NA	False	NA	NA	False	NA	NA	NA	133003735	133001904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_133003254_133003339
63661	chr10	-	2101	5	Fusion	ENSMUSG00000111994.2_ENSMUSG00000112168.2	novel	1140	3	NA	NA	-25029	295	multi-exon	FALSE	canonical	0	0	junction_3	4.63680924774785	45	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCAACTTTTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	72810653	72775774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_72776843_72780098_72780242_72785400_72785926_72806094_72806255_72810448
63662	chr13	+	1123	5	NNC	ENSMUSG00000037966.16	novel	1321	5	NA	NA	-18	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	166.265412819383	11	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGTTCCATGTGCCAC	NA	False	NA	NA	False	NA	NA	NA	49340982	49349721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079_49349336_49349378
63663	chr16	+	852	1	Intergenic	novelGene_3871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTATTATGTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	94065823	94066675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_94065800_94066700
63664	chr11	-	2062	10	NNC	ENSMUSG00000020599.14	novel	3464	10	NA	NA	8510	-1358	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	5.53774924194538	2	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCAAGTGCTGGGATTAA	NA	False	NA	NA	False	NA	NA	NA	109180382	109148185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
63665	chr18	+	1969	14	FSM	ENSMUSG00000024424.16	ENSMUST00000169401.8	1950	14	-30	11	0	-11	multi-exon	FALSE	canonical	1	3	junction_1	13.7926315977239	55	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAATATTCACCCTGTG	NA	False	NA	NA	False	NA	NA	NA	12732952	12870096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
63666	chr1	-	1122	5	FSM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	11	26	11	2	multi-exon	FALSE	canonical	3	312	junction_1	25.5391855782443	388	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCATGCCGATGCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	86510258	86470741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475250_86475340_86510021
63667	chr8	-	732	8	NNC	ENSMUSG00000031590.9	novel	1039	9	NA	NA	135	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	336.681888252919	7	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTTTACAGAGTTCTCG	NA	False	NA	-41	True	NA	NA	NA	41869976	41850503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41867877_41867911_41869936
63668	chr4	+	929	5	NNC	ENSMUSG00000028333.11	novel	1716	7	NA	NA	9266	-134	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	3097.97243168818	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTTTTCTCATGCTTT	5369	False	NA	NA	False	NA	NA	NA	46460167	46472523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46460240_46463806_46463930_46468558_46468788_46469905_46469974_46472086
63669	chr17	-	1741	6	FSM	ENSMUSG00000002504.16	ENSMUST00000234121.2	1840	6	99	0	99	0	multi-exon	FALSE	canonical	3	54	junction_5	38.2601620487943	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAACTCTGGCGCCTGTGT	7741	False	NA	NA	False	NA	NA	NA	24866701	24858264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24866500
63670	chr11	+	873	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	-26	-68	-26	68	multi-exon	FALSE	canonical	3	348	junction_4	23.6893963620857	1128	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGTGGTTAGGGCTAGA	4621	False	NA	NA	False	NA	NA	NA	68961605	68963924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
63671	chr1	-	1394	8	Genic_Genomic	ENSMUSG00000101711.2	novel	529	2	NA	NA	-226	-348	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGCCCTCAACCAAAAAGGC	1920	False	NA	NA	False	NA	NA	NA	34484037	34478939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_34479009_34479120_34479229_34481988_34482073_34482456_34482572_34482645_34482775_34482847_34483004_34483076_34483206_34483433
63672	chr15	-	2120	7	NNC	ENSMUSG00000000489.8	novel	2944	7	NA	NA	272	-19	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	4.63381292481928	13	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGCCACAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	79897132	79880093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79897064
63673	chr18	+	1906	13	FSM	ENSMUSG00000024381.17	ENSMUST00000234496.2	1886	13	-19	-1	-4	1	multi-exon	FALSE	canonical	3	6	junction_10	7.81024967590665	72	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAACGAGGCGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	32510278	32568787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32565035_32565147_32565376_32565479_32568187
63674	chr15	+	962	6	ISM	ENSMUSG00000022201.17	ENSMUST00000128475.9	1115	7	-8	3292	-8	42	5prime_fragment	FALSE	canonical	3	539	junction_4	43.3755691605309	1	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACAGCTGCCTGGACAGG	52	False	NA	NA	False	NA	NA	NA	12117928	12146344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234
63675	chr5	-	1176	2	FSM	ENSMUSG00000048373.9	ENSMUST00000061299.9	1161	2	-25	10	-10	-7	multi-exon	FALSE	canonical	3	24	junction_1	0	80	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCAGAAATACCACTGTT	NA	False	NA	NA	False	NA	NA	NA	44139131	44136211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_44137311_44139054
63676	chr4	+	414	2	ISM	ENSMUSG00000061322.16	ENSMUST00000119127.2	500	3	1616	56	1616	-56	3prime_fragment	FALSE	canonical	2	2	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCCATTATACCCTCTT	88	False	NA	NA	False	NA	NA	NA	41634963	41638102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_41635148_41637872
63677	chr7	+	1439	7	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	0	-2	intron_retention	FALSE	canonical	3	9	junction_5	195.299485121925	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTCGTTTTGGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	30008233	30013726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30008260_30008905_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30012897_30013024_30013343
63678	chr12	-	1731	9	Antisense	novelGene_ENSMUSG00000021192.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGCCCGGGCCGCCACAG	NA	False	NA	NA	False	NA	NA	NA	102455758	102435587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_102435621_102438254_102438822_102440802_102441031_102442426_102442620_102443053_102443178_102445854_102446055_102450657_102450832_102453376_102453505_102455674
63679	chr12	-	1090	9	NNC	ENSMUSG00000021189.12	novel	1000	9	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	103.705110770878	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGATTTTGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	101924500	101899187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914438_101914699_101924392
63680	chr5	+	961	8	NNC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.906139227296	3	8	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGGTTTTTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	66833581	66844574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_66833675_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66839969_66841062_66841099_66842115_66842175_66844184
63682	chr11	-	1814	13	ISM	ENSMUSG00000020541.13	ENSMUST00000107868.8	2093	16	12782	9	-11507	-9	3prime_fragment	FALSE	canonical	3	215	junction_9	18.5262576421203	1	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGTCAGTTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	90565645	90536525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495
63683	chr1	-	775	4	NNC	ENSMUSG00000026234.13	novel	3072	12	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2754.38563426079	176	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTTAATACTTCCTA	NA	False	NA	NA	False	NA	NA	NA	86287130	86278215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278397_86284900_86285175_86285828_86285946_86286927
63685	chr12	-	1671	12	NNC	ENSMUSG00000020636.15	novel	1500	12	NA	NA	8720	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	2.63165724111457	24	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTTGATCTCCTGTTG	7853	False	NA	NA	False	NA	NA	NA	28623794	28603753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28604047_28605262_28605388_28607340_28607450_28609237_28609312_28609868_28610025_28613369_28613503_28614233_28614314_28615395_28615525_28618000_28618089_28620608_28620660_28623175_28623379_28623564
63686	chr14	-	2150	11	ISM	ENSMUSG00000051506.18	ENSMUST00000130509.10	10158	62	207624	21	45895	-21	3prime_fragment	FALSE	canonical	3	5	junction_6	4.28485705712571	53	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGGCTGCTTGAGCGTT	8370	False	NA	NA	False	NA	NA	NA	32699399	32681524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_32681962_32682698_32682811_32686495_32686581_32688320_32688504_32689429_32689610_32692779_32692939_32693534_32693720_32695492_32695644_32696111_32696325_32697111_32697204_32699046
63687	chr7	+	1505	7	FSM	ENSMUSG00000046223.11	ENSMUST00000002284.11	1506	7	2	-1	1	0	multi-exon	FALSE	canonical	3	18	junction_3	5.84284938098603	57	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTAGGTCTCTTAC	NA	False	NA	NA	False	NA	NA	NA	24161910	24175393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24161993_24164555_24164667_24166099_24166244_24171323_24171480_24171997_24172133_24173634_24173782_24174663
63688	chr10	-	1801	4	Antisense	novelGene_ENSMUSG00000019977.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCTCTGCGCCGAGCGTC	NA	False	NA	NA	False	NA	NA	NA	21184951	21171922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_21172074_21175074_21175141_21180426_21180541_21183481
63689	chr11	-	1713	9	NIC	ENSMUSG00000018570.18	novel	2009	8	NA	NA	-10	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	6.29359793758705	81	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGGGAGCTGCGTG	9779	False	NA	NA	False	NA	NA	NA	69791730	69788186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69788319_69788436_69788581_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790753_69791128
63690	chr11	+	2711	1	Intergenic	novelGene_2212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	142	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATGGTAAAGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	6426978	6429689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_6427000_6429700
63693	chr9	-	2079	18	NNC	ENSMUSG00000032064.18	novel	364	4	NA	NA	-20	-2493	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	14.4557551906321	19	3	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTAGTCTCATATAGAAC	NA	False	NA	NA	False	NA	NA	NA	50639295	50590496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50590663_50592786_50592854_50593332_50593501_50593836_50593927_50595024_50595097_50595172_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
63694	chr15	-	828	7	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	-33	29791	-23	-29019	5prime_fragment	FALSE	canonical	3	43	junction_3	20.0201287597147	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGGAAGTACAGAGAAGG	NA	False	NA	NA	False	NA	NA	NA	79489333	79475602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
63695	chr6	+	1199	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	17	3	4	-3	multi-exon	FALSE	canonical	3	20	junction_1	6.5	82	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGTTTCATTATTGTT	NA	False	NA	NA	False	NA	NA	NA	124785885	124787579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_124785994_124786189_124786933_124787231
63696	chr17	+	1267	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	0	8	0	-8	multi-exon	FALSE	canonical	3	41	junction_3	42.4223328093547	177	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTAGTAAAGTGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	95057527	95082549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
63697	chr12	+	800	5	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	-91	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	858.114357180906	18	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	7052	False	NA	NA	False	NA	NA	NA	112611309	112615579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_112611519_112612782_112612856_112613271_112613467_112614258_112614416_112615413
63698	chr11	+	1268	4	Antisense	novelGene_ENSMUSG00000018849.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTATCACTGTCACTGC	NA	False	NA	NA	False	NA	NA	NA	35729228	35735047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_35730074_35731138_35731261_35732580_35732814_35734979
63699	chr5	-	415	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-78	42	multi-exon	FALSE	canonical	0	0	junction_1	0	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAGTAACATGGAATA	NA	False	NA	NA	False	NA	NA	NA	5833633	5831572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5831641_5833286
63700	chr2	+	635	5	NNC	ENSMUSG00000008333.13	novel	2061	7	NA	NA	-1	-1121	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	424.768172065657	80	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTATTCTGTTTACTG	2009	False	NA	NA	False	NA	NA	NA	142904979	142913652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910217_142913354
63701	chr2	+	806	4	NNC	ENSMUSG00000001403.14	novel	967	6	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	789.50279712403	20	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	NA	NA	NA	164611758	164614827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164612001_164612286_164612315_164613212_164613342_164614420
63702	chr4	-	254	1	Intergenic	novelGene_1988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCGAACATTGGCATAAT	NA	False	NA	NA	False	NA	NA	NA	137522356	137522102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_137522100_137522400
63703	chr4	-	290	1	Intergenic	novelGene_1987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGTGGTATGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	137521350	137521060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_137521100_137521400
63705	chr5	-	677	1	Intergenic	novelGene_670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCTCCATAAAGCCATC	9365	False	NA	NA	False	NA	NA	NA	24613304	24612627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_24612600_24613300
63706	chr19	-	1938	7	NIC	ENSMUSG00000024792.10	novel	922	8	NA	NA	3	-5	intron_retention	FALSE	canonical	3	381	junction_6	94.6766426668514	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTAAACCTTCTGAAGCA	6482	False	NA	NA	False	NA	NA	NA	6134931	6130799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
63707	chr19	-	2919	10	NNC	ENSMUSG00000024781.17	novel	2969	10	NA	NA	13	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	12.8533994158436	3	82	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATAGGCCTGAACATC	5950	False	NA	NA	False	NA	NA	NA	34504839	34469731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_34471614_34472459_34472532_34477496_34477564_34478898_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821_34500940_34502137_34502247_34504765
63708	chr17	-	1189	3	NNC	ENSMUSG00000117231.2	novel	2325	5	NA	NA	30721	445	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	31	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTTACTTCCAAAGATG	4298	False	NA	NA	False	NA	NA	NA	71082271	71072388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71073324_71081417_71081534_71082133
63709	chr8	+	1536	5	FSM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	80	0	-42	0	multi-exon	FALSE	canonical	3	32	junction_1	6.68954408012983	124	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	False	NA	NA	False	NA	NA	NA	105067305	105074304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
63710	chr11	+	1838	2	FSM	ENSMUSG00000018500.3	ENSMUST00000018644.3	1845	2	0	7	0	-7	multi-exon	FALSE	canonical	3	17	junction_1	0	32	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCCAGCACGCACTGGCT	8723	False	NA	NA	False	NA	NA	NA	62139809	62157272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62140263_62155887
63712	chr11	-	877	3	FSM	ENSMUSG00000020268.15	ENSMUST00000135853.2	349	3	-6	-522	-3	522	multi-exon	FALSE	canonical	3	120	junction_2	14.5	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTCCTTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	54751417	54740477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_54741242_54744052_54744126_54751377
63713	chr1	-	529	3	Intergenic	novelGene_462	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCACACTAATGGATATT	NA	False	NA	NA	False	NA	NA	NA	140537506	140511781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_140512057_140523711_140523798_140537338
63716	chr17	+	1189	4	ISM	ENSMUSG00000044279.16	ENSMUST00000071826.10	1194	5	2996	-4	-130	-1	3prime_fragment	TRUE	canonical	3	14	junction_1	93.9657147876584	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTTAGCTGTAAGCTC	1396	False	NA	NA	False	NA	NA	NA	57369100	57372916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57369229_57369594_57369767_57370636_57370699_57372089
63717	chr10	+	2130	6	NNC	ENSMUSG00000001436.16	novel	2347	6	NA	NA	-4	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	42.5318704032635	1	105	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGGGCTTTTCTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	76869097	76886259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_76869182_76874183_76874415_76877649_76878404_76878731_76878809_76880456_76880555_76885373
63718	chr16	-	880	4	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	579	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	304.527320431006	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAAGAAGTGTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	22084676	22064618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22064834_22065128_22065389_22077792_22078012_22084490
63719	chr1	-	2598	14	FSM	ENSMUSG00000026014.16	ENSMUST00000140485.8	10024	14	158	7268	144	1116	multi-exon	FALSE	canonical	3	5	junction_1	7.94731170356426	21	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCAGAGCTTTGGGGTAAA	NA	False	NA	NA	False	NA	NA	NA	60605780	60528718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_60529481_60532696_60532840_60534573_60534695_60535383_60535483_60537582_60537694_60538638_60538783_60539713_60539780_60540914_60541037_60541983_60542144_60542676_60542755_60564750_60565260_60566542_60566649_60572445_60572566_60605723
63720	chr18	-	1714	9	ISM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	12556	829	-6836	178	3prime_fragment	FALSE	canonical	3	48	junction_3	13.1380887118332	20	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGATGTAATTTGGGAAAAT	NA	False	NA	NA	False	NA	NA	NA	46432439	46416046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_46416354_46416743_46416863_46418679_46418776_46420416_46420831_46423818_46424210_46424590_46424667_46426470_46426561_46429335_46429458_46432340
63721	chr18	-	407	1	ISM	ENSMUSG00000071855.6	ENSMUST00000072835.7	2801	10	29248	123	8170	-123	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTAATCTTTGGTGGA	NA	False	NA	-68	True	NA	NA	NA	46415747	46415340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_46415300_46415700
63722	chr6	-	1105	5	Antisense	novelGene_ENSMUSG00000029910.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATGCCACGCTGATACA	NA	False	NA	NA	False	NA	NA	NA	66518036	66512982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_66513072_66514549_66514658_66515944_66516050_66516758_66516934_66517408
63723	chr9	+	1286	4	NNC	ENSMUSG00000066442.18	novel	705	4	NA	NA	1	-1276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	18.5711843695788	7	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACTAAATGCACTTTTT	NA	False	NA	NA	False	NA	NA	NA	89093457	89116690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_89093535_89096464_89096535_89097261_89097474_89115763
63724	chr5	+	850	4	NNC	ENSMUSG00000029642.12	novel	1350	4	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	202.214957134454	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGCTTTCCTCTTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	147014362	147048169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_147014504_147038038_147038114_147047457_147047626_147047703
63726	chr4	+	614	4	NNC	ENSMUSG00000028773.9	novel	823	4	NA	NA	145	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2135.19028556135	7	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGTTGTCTGTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	130202532	130209252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130202644_130206083_130206208_130207757_130207849_130208964
63727	chr17	+	1103	2	FSM	ENSMUSG00000013766.12	ENSMUST00000172959.2	501	2	-85	-517	-85	-2	multi-exon	FALSE	canonical	3	488	junction_1	0	127	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTAAGAGAGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35296045	35297778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35296183_35296812
63729	chr4	-	926	1	Intergenic	novelGene_2013	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGAAAGGGAATTGGGAG	NA	False	NA	NA	False	NA	NA	NA	144131311	144130385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_144130400_144131300
63730	chr7	-	1472	9	NIC	ENSMUSG00000030979.14	novel	1762	10	NA	NA	-10	-7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	23.9214208399083	10	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATAATAAATAGGACTG	NA	False	NA	NA	False	NA	NA	NA	133310808	133288100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_133288846_133291310_133291410_133292236_133292323_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
63732	chr3	-	1215	7	NNC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	409	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	14.0564338768172	117	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTAAATTATGTTATTG	NA	False	NA	NA	False	NA	NA	NA	35691305	35672784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_35673025_35673834_35673956_35677231_35677418_35678500_35678611_35681522_35681682_35682985_35683124_35691044
63734	chr13	+	1138	9	NNC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	12	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	421.680992427925	1	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTCTATATATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	85337578	85361016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356907_85357009_85359972_85360034_85360876
63735	chr17	-	1357	1	FSM	ENSMUSG00000101959.2	ENSMUST00000189788.2	1445	1	83	5	83	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	33	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAGTACTGGTTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	5468959	5467602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_5467600_5469000
63736	chr11	-	1200	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103040.11	1204	7	4	0	4	0	multi-exon	FALSE	canonical	2	2	junction_5	40.7553677446297	547	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	NA	False	NA	NA	NA	115078212	115073657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077944
63738	chr1	+	2219	3	FSM	ENSMUSG00000026150.15	ENSMUST00000162794.2	607	3	-1114	-498	-1114	-3	multi-exon	FALSE	canonical	3	223	junction_1	152.5	17	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAGCAATGTCTATGGA	4594	False	NA	NA	False	NA	NA	NA	82723529	82730105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_82724864_82728240_82728326_82729305
63739	chr1	-	2599	4	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-39	27096	-39	-4	5prime_fragment	FALSE	canonical	3	122	junction_2	3.09120616516523	78	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGAATGGAATGGCTATT	NA	False	NA	NA	False	NA	NA	NA	30912701	30868515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_30870641_30876185_30876348_30902067_30902337_30912658
63740	chr1	+	1862	8	NIC	ENSMUSG00000052423.16	novel	1998	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	74.0904025842892	1	93	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	NA	False	NA	NA	NA	171097911	171104467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171097985_171098772_171098944_171099397_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
63741	chr17	+	2254	1	FSM	ENSMUSG00000084751.3	ENSMUST00000122802.3	81	1	-897	-1276	-897	1276	mono-exon	FALSE	NA	NA	NA	NA	NA	101	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTCTTGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	36227883	36230137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36227900_36230100
63743	chr4	+	2492	1	Intergenic	novelGene_1945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCCAACCCCCTTTTGA	NA	False	NA	NA	False	NA	NA	NA	125406300	125408792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_125406300_125408800
63744	chr4	+	711	1	Intergenic	novelGene_1946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTCTGCGCGAATGGA	NA	False	NA	NA	False	NA	NA	NA	125409299	125410010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_125409300_125410000
63745	chr11	-	1455	7	FSM	ENSMUSG00000034449.8	ENSMUST00000047560.8	1254	7	-73	-128	-43	128	multi-exon	FALSE	canonical	3	39	junction_6	7.19760762722973	129	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTACCTTCAGAAGTAT	NA	False	NA	NA	False	NA	NA	NA	84719863	84711553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716404_84719576
63746	chrX	-	4376	14	NIC	ENSMUSG00000015340.11	novel	4752	13	NA	NA	-130	-543	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	1.59139698965978	4	113	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTTGCTCCCAAGCCC	NA	False	NA	NA	False	NA	NA	NA	9354140	9302033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_9304583_9306133_9306259_9308771_9308919_9310786_9310950_9312931_9313186_9315879_9315973_9316920_9317051_9319824_9320016_9321372_9321519_9323198_9323284_9331882_9331994_9333321_9333418_9335444_9335544_9353953
63747	chr17	+	1030	1	Intergenic	novelGene_283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGTAGAGGCAGCAAAAGG	NA	False	NA	NA	False	NA	NA	NA	66787304	66788334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_66787300_66788300
63748	chr17	-	618	1	Intergenic	novelGene_284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACCTTTCCCTCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	66788998	66788380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66788400_66789000
63749	chr14	+	678	1	Intergenic	novelGene_519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTTGATGTGCATCAGT	9418	False	NA	NA	False	NA	NA	NA	14696235	14696913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_14696200_14696900
63750	chr9	-	190	1	Antisense	novelGene_ENSMUSG00000032280.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGCCTCGGACCTGCG	NA	False	NA	NA	False	NA	NA	NA	61279933	61279743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_61279700_61279900
63751	chrX	+	2323	15	ISM	ENSMUSG00000031385.15	ENSMUST00000002079.7	6030	35	10419	5	1987	-5	3prime_fragment	FALSE	canonical	0	0	junction_1	1.4638501094228	10	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCAATCTGAAGCCCCTG	NA	False	NA	NA	False	NA	NA	NA	72811123	72816115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_72811279_72811386_72811488_72811563_72811788_72811945_72812125_72812295_72812363_72812739_72813068_72813207_72813312_72813395_72813493_72813861_72814041_72814184_72814346_72814700_72814849_72815016_72815082_72815148_72815225_72815351_72815427_72815751
63753	SIRV4001	+	2862	1	FSM	SIRV4001A	SIRV4001	3997	1	0	1135	0	-1135	mono-exon	FALSE	NA	NA	NA	NA	NA	1	149	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTGAGAGTTATCCCTG	NA	False	NA	NA	False	NA	NA	NA	0	2862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4001_+_0_2900
63754	chr17	-	2582	6	ISM	ENSMUSG00000023845.8	ENSMUST00000232462.2	2864	11	9	17649	9	-5	5prime_fragment	FALSE	canonical	3	26	junction_5	3.74165738677394	7	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCAAATGTAATTGTTTG	NA	False	NA	NA	False	NA	NA	NA	17844742	17790028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_17791291_17791887_17792009_17794208_17794341_17795510_17795650_17798793_17799635_17844655
63756	chr8	-	1862	8	NIC	ENSMUSG00000038000.11	novel	3154	11	NA	NA	-3	-7	intron_retention	FALSE	canonical	3	202	junction_4	10.1840210974981	1	70	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCGGCAGGAGGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	106427720	106424796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426528_106426635_106426991_106427078_106427173_106427334_106427472_106427551
63757	chrX	+	1553	1	FSM	ENSMUSG00000048355.3	ENSMUST00000057625.3	1580	1	-6	33	-6	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	450	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTCTATAGGAATAGATC	NA	False	NA	NA	False	NA	NA	NA	134934109	134935662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134934100_134935700
63762	chr13	-	709	2	FSM	ENSMUSG00000050876.10	ENSMUST00000225362.2	556	2	-454	301	-438	-301	multi-exon	FALSE	canonical	1	4	junction_1	0	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACGTAGGTGTCCACCTA	NA	False	NA	NA	False	NA	NA	NA	59854449	59852864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_59852903_59853778
63763	chr11	-	1100	7	FSM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	76	6	-6	-6	multi-exon	FALSE	canonical	3	190	junction_5	18.9245578254523	397	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAACTAGCTAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	53959764	53945759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
63764	chr16	-	1803	1	Intergenic	novelGene_3660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTTTGTTGCGTCT	NA	False	NA	NA	False	NA	NA	NA	48247703	48245900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_48245900_48247700
63765	chr15	-	2285	20	NNC	ENSMUSG00000062906.13	novel	2412	20	NA	NA	60	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	10.8968978278897	1	87	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGCCAAACACAACACATCT	NA	False	NA	NA	False	NA	NA	NA	89012794	89007522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008460_89008734_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012395_89012523_89012592
63767	chr14	+	2097	1	Antisense	novelGene_ENSMUSG00000021810.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGCTTGGGCCCTGATCC	NA	False	NA	NA	False	NA	NA	NA	20395991	20398088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_20396000_20398100
63768	chr15	-	1760	13	FSM	ENSMUSG00000022574.8	ENSMUST00000023237.8	1898	13	131	7	-60	0	multi-exon	FALSE	canonical	3	20	junction_8	7.1351049201972	78	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGCCATGTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	75766199	75762811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75762910_75762997_75763106_75763195_75763351_75763428_75763532_75763632_75763714_75763811_75763897_75764190_75764332_75764405_75764603_75764953_75765070_75765154_75765286_75765401_75765485_75765568_75765697_75765865
63769	chr18	+	2211	1	Antisense	novelGene_ENSMUSG00000118216.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGCATGTTTGGTGACT	NA	False	NA	NA	False	NA	NA	NA	67056582	67058793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_67056600_67058800
63771	chrX	-	907	7	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	13	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6005.39401057268	2	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230956_101231059_101231427_101231609_101231899_101231978_101232903
63772	chr18	+	2474	1	NIC	ENSMUSG00000037058.17	novel	857	5	NA	NA	69	-8835	mono-exon	FALSE	NA	NA	NA	NA	NA	4	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCCACCTAACCTTTTAA	5676	False	NA	NA	False	NA	NA	NA	35732705	35735179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35732700_35735200
63775	chr10	-	1039	7	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1386.03158533836	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTACTGTGGTGCAATCC	5623	False	NA	NA	False	NA	NA	NA	79875521	79871788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79872132_79872360_79872433_79872597_79872677_79872748_79872804_79873019_79873219_79874272_79874480_79875437
63776	chr5	+	1383	5	NIC	ENSMUSG00000029649.11	novel	1579	6	NA	NA	-22	166	intron_retention	FALSE	canonical	3	2983	junction_1	196.730145122704	4	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATCATGTGTGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	147797415	147812587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_147797502_147799362_147799461_147805532_147806324_147809375_147809470_147812273
63778	chr19	+	1528	2	ISM	ENSMUSG00000024854.5	ENSMUST00000235306.2	645	3	-528	-1	11	1	intron_retention	FALSE	canonical	3	52	junction_1	0	14	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGACCTTACATCTCT	NA	False	NA	NA	False	NA	NA	NA	4281963	4283686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_4282607_4282801
63779	chr11	+	1226	9	NNC	ENSMUSG00000020407.14	novel	518	6	NA	NA	-53	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1211.49460894384	2	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATTGTGTGACTCTGCGG	NA	False	NA	NA	False	NA	NA	NA	9068733	9086166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068868_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085965
63780	chr17	+	721	5	FSM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	32	0	32	0	multi-exon	FALSE	canonical	3	300	junction_1	562.646592009585	5092	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	79223977	79227735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
63781	chr17	+	513	4	Antisense	novelGene_ENSMUSG00000014769.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	39.1265752256556	100	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGTCCACTTCCGCCTCC	NA	False	NA	NA	False	NA	NA	NA	15696283	15718566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_15696466_15697574_15697643_15714679_15714783_15718406
63782	chr6	-	1088	8	NNC	ENSMUSG00000019210.11	novel	1312	9	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	470.808856747446	20	30	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	NA	False	NA	NA	NA	120799636	120772204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120772726_120774837_120774891_120778003_120778099_120780268_120780338_120781003_120781079_120784542_120784614_120795244_120795361_120799548
63783	chr8	-	1330	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	24	-831	7	-17	multi-exon	FALSE	canonical	3	30	junction_1	157.5	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGAGAAGCTAATCAATTC	NA	False	NA	NA	False	NA	NA	NA	117648154	117615440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_117616599_117637866_117637974_117648089
63786	chr13	+	1425	2	FSM	ENSMUSG00000021476.10	ENSMUST00000223377.2	828	2	80	-677	80	-16	multi-exon	FALSE	canonical	3	156	junction_1	0	54	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAGTATAAAGGTATGAC	NA	False	NA	NA	False	NA	NA	NA	64332396	64334335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_64332573_64333086
63787	chr4	-	1697	2	FSM	ENSMUSG00000050234.8	ENSMUST00000053753.8	1685	2	-12	0	-12	0	multi-exon	FALSE	canonical	3	11	junction_1	0	61	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGTGTGCACTGATGTT	NA	False	NA	NA	False	NA	NA	NA	127207844	127205213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127206779_127207712
63790	chr11	-	1140	5	ISM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	-5	9569	-5	-9562	5prime_fragment	FALSE	canonical	3	12	junction_3	18.9010581714358	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTATTTTATTTCTAT	NA	False	NA	NA	False	NA	NA	NA	72252704	72245116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
63791	chr5	-	2051	1	Antisense	novelGene_ENSMUSG00000107300.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTCTGGATTAAACAC	NA	False	NA	NA	False	NA	NA	NA	66846749	66844698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_66844700_66846700
63792	chr4	+	2121	4	FSM	ENSMUSG00000070619.6	ENSMUST00000094526.5	2094	4	-18	-9	-18	9	multi-exon	TRUE	canonical	1	3	junction_3	3.09120616516523	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTTTGTTATTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	144084493	144090998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_144084551_144088178_144088493_144088970_144089562_144089839
63793	chr8	-	783	1	Antisense	novelGene_ENSMUSG00000056019.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTTGTAGTTCCATACA	NA	False	NA	NA	False	NA	NA	NA	72649664	72648881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_72648900_72649700
63794	chr3	+	1925	1	FSM	ENSMUSG00000036894.4	ENSMUST00000049064.4	6793	1	3472	1396	3472	-1396	mono-exon	FALSE	NA	NA	NA	NA	NA	49	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCCCAAACTATTTGTG	NA	False	NA	NA	False	NA	NA	NA	61272530	61274455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_61272500_61274500
63795	chr1	+	1101	6	NIC	ENSMUSG00000026111.16	novel	1414	6	NA	NA	-2	-3	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	188.928134485047	48	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGCTGTGACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	37469264	37478062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
63797	chr8	+	1691	1	Genic_Genomic	ENSMUSG00000031770.17	novel	NA	NA	NA	NA	-4	-4185	mono-exon	FALSE	NA	NA	NA	NA	NA	4	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGTGTGAGTCTCTCA	NA	False	NA	NA	False	NA	NA	NA	95113061	95114752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_95113100_95114800
63799	chr15	+	683	1	Antisense	novelGene_ENSMUSG00000022195.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTCAAATCCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	12820762	12821445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_12820800_12821400
63800	chr12	+	1290	10	NNC	ENSMUSG00000021258.11	novel	2789	12	NA	NA	64	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	26.0128173535022	31	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTATGTGTGAGTACAGC	NA	False	NA	NA	False	NA	NA	NA	108146060	108169617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_108146140_108148435_108148468_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108161949_108169340
63801	chr2	+	1058	5	NNC	ENSMUSG00000027430.13	novel	1350	6	NA	NA	77	-45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	132.70903322683	25	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAATGAACTACTTTATT	NA	False	NA	NA	False	NA	NA	NA	144441893	144610633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_144442012_144445707_144445799_144459111_144459348_144588883_144588994_144610130
63802	chr7	-	2371	2	Intergenic	novelGene_2912	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGTAGCACTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	29296206	29284679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_29286904_29296059
63803	chr4	-	1466	6	NIC	ENSMUSG00000029048.4	novel	1596	7	NA	NA	23	-665	intron_retention	FALSE	canonical	3	1097	junction_5	225.604609881979	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACCAAATTGCATTGAT	NA	False	NA	NA	False	NA	NA	NA	155170805	155159231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
63804	chr12	+	2500	14	NNC	ENSMUSG00000066438.7	novel	3535	13	NA	NA	60	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3.37761513847695	3	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGCATAAAACTAGATTAC	NA	False	NA	NA	False	NA	NA	NA	80739424	80770974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80739802_80752317_80752412_80752778_80752869_80753126_80753204_80753945_80754038_80754955_80755009_80763994_80764090_80765686_80765781_80767357_80767537_80767986_80768120_80768222_80768368_80768719_80768870_80769092_80769512_80770472
63805	chr5	-	1996	1	Genic_Intron	novelGene_968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTCCTCTTTGTGAAG	NA	False	NA	NA	False	NA	NA	NA	147466036	147464040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Intron_chr5_-_147464000_147466000
63810	chr3	-	1202	3	NIC	ENSMUSG00000028062.16	novel	668	4	NA	NA	-8	0	intron_retention	FALSE	canonical	3	2467	junction_2	197	9	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1134	False	NA	NA	False	NA	NA	NA	88460174	88457125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88458093_88459661_88459825_88460102
63811	chr14	+	2549	6	FSM	ENSMUSG00000039599.17	ENSMUST00000224930.2	2716	6	160	7	47	-7	multi-exon	FALSE	canonical	3	59	junction_5	79.7004391455907	6	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGACAGCACCAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	20398389	20415305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330
63812	chr6	+	283	1	Intergenic	novelGene_4261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCATCGAAGATCTGCTT	NA	False	NA	NA	False	NA	NA	NA	134219626	134219909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_134219600_134219900
63813	chr6	+	1924	3	Antisense	novelGene_ENSMUSG00000108263.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGATTCAAGTGTGTGCTCT	NA	False	NA	NA	False	NA	NA	NA	134220061	134225069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_134221675_134223858_134224043_134224942
63814	chr11	-	1466	4	NNC	ENSMUSG00000020419.12	novel	1969	11	NA	NA	14730	15	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	26.7374061735406	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAACATGGGGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	4362532	4295798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4296667_4358589_4358844_4359006_4359159_4362340
63818	chr14	+	1586	2	FSM	ENSMUSG00000021748.10	ENSMUST00000225747.2	620	2	-728	-238	-728	-12	multi-exon	FALSE	canonical	3	2485	junction_1	0	4	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCCCACCAATGAAGTCT	NA	False	NA	NA	False	NA	NA	NA	14301948	14303765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_14303061_14303291
63820	chr15	+	1138	7	NNC	ENSMUSG00000022359.11	novel	1383	6	NA	NA	-5	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	22.8521820013368	1	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTGAAGAATCTGTGC	2670	False	NA	NA	False	NA	NA	NA	58004782	58022053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297_58021488_58021725
63822	chrX	+	1512	1	FSM	ENSMUSG00000048040.9	ENSMUST00000058119.9	1532	1	18	2	18	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTTGTAGGTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	134894590	134896102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_134894600_134896100
63824	chr12	-	1179	2	Genic_Genomic	ENSMUSG00000054302.16	novel	4186	6	NA	NA	21	-4070	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTATTTAAATAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	54742585	54740965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_54741616_54742056
63825	chr13	-	1501	9	Antisense	novelGene_ENSMUSG00000114388.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTCACCAGGGAAAAGC	NA	False	NA	NA	False	NA	NA	NA	41332504	41310909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_41310991_41316521_41316625_41316770_41316838_41324944_41325019_41326116_41326222_41327671_41327771_41327870_41327936_41330360_41330418_41331654
63826	chr11	+	1044	5	NNC	ENSMUSG00000000581.9	novel	416	2	NA	NA	-9406	584	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	283.165146160328	41	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTCATTAACTCTGAT	NA	False	NA	NA	False	NA	NA	NA	17198172	17217208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_17198269_17212647_17212795_17213608_17213676_17213950_17214007_17216530
63827	chr2	+	1613	6	FSM	ENSMUSG00000038840.8	ENSMUST00000137859.2	1529	6	-85	1	-85	-1	multi-exon	FALSE	canonical	3	12	junction_1	3.81575680566778	76	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGTGCTCAGCTAGGCTC	NA	False	NA	NA	False	NA	NA	NA	180570730	180575799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180571307_180572597_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
63829	chr3	-	1960	6	FSM	ENSMUSG00000039519.7	ENSMUST00000035625.7	2166	6	-15	221	-15	-221	multi-exon	FALSE	canonical	2	3	junction_2	6.79411510058521	40	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCCAGGGTGATTTTA	NA	False	NA	NA	False	NA	NA	NA	18297517	18126334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_18126918_18133468_18133645_18150686_18150894_18151367_18151959_18157864_18158002_18297251
63830	chr2	-	969	5	FSM	ENSMUSG00000027581.13	ENSMUST00000103045.4	1136	5	168	-1	168	1	multi-exon	FALSE	canonical	3	148	junction_1	19.0312243431683	967	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACGTGTGGCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	180956125	180948250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955986
63832	chr10	+	1805	11	NNC	ENSMUSG00000019978.17	novel	3621	16	NA	NA	-7	19	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	95.9820816611101	1	62	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAAGTACCCTCATAGAC	NA	False	NA	NA	False	NA	NA	NA	25308506	25360197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_25308740_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105
63833	chr7	+	1585	2	ISM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	97	816	-40	-816	intron_retention	FALSE	canonical	3	3249	junction_1	0	6	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTTTTCCAGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	18883743	18886651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_18883820_18885142
63834	chrX	-	1845	5	NNC	ENSMUSG00000025040.14	novel	1983	5	NA	NA	1	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	104.48534586247	2	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTCAGTTCCTTAATAT	NA	False	NA	NA	False	NA	NA	NA	17438491	17422825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_17424251_17424961_17425049_17434271_17434348_17437541_17437699_17438391
63836	chr12	+	1723	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	-29	4581	16	278	multi-exon	FALSE	canonical	3	65	junction_3	11.7473401244707	120	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATCTTCTAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	74011270	74031159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
63839	chr1	-	2433	17	ISM	ENSMUSG00000026571.13	ENSMUST00000027856.13	4110	19	222	8090	222	-7283	5prime_fragment	FALSE	canonical	3	29	junction_2	5.41842920042331	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAGAAGAGTCAAGAATTT	NA	False	NA	NA	False	NA	NA	NA	165287812	165164356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_165164403_165165756_165165914_165167453_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
63840	chr16	-	1275	3	NNC	ENSMUSG00000059920.10	novel	5522	3	NA	NA	249	-3995	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	94	1	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATAAATCCCACTTGAGA	NA	False	NA	NA	False	NA	NA	NA	64591275	64586493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_64587354_64589286_64589526_64591099
63841	chr3	-	587	1	Intergenic	novelGene_3106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTCAGGCAAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	41377759	41377172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41377200_41377800
63843	chr19	+	1462	7	NNC	ENSMUSG00000045098.20	novel	1721	10	NA	NA	-5330	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	105.423616371707	5	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTAGAATTGACCAAAA	NA	False	NA	NA	False	NA	NA	NA	3836389	3855464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854900
63844	chr10	+	3533	6	FSM	ENSMUSG00000039552.15	ENSMUST00000169670.8	3650	6	-100	217	-100	-217	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	1	148	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGCATGTGCACGCATT	NA	False	NA	NA	False	NA	NA	NA	33781006	33791800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_33781835_33784062_33784298_33785008_33785747_33787501_33787647_33788957_33789076_33790331
63845	chr18	+	1853	1	FSM	ENSMUSG00000098702.2	ENSMUST00000184181.2	1865	1	12	0	12	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGGTCAGACTTTTG	NA	False	NA	NA	False	NA	NA	NA	61859472	61861325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_61859500_61861300
63846	chr10	+	1755	8	NNC	ENSMUSG00000020185.17	novel	5473	13	NA	NA	-51	-4619	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	12.5551843101256	1	95	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAAACTGCTATGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	110590071	110616752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977_110603113_110610502_110610693_110614626_110615164_110616627
63847	chr15	+	1313	5	Antisense	novelGene_ENSMUSG00000022552.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCTAGGAAGAGGGTTG	NA	False	NA	NA	False	NA	NA	NA	76231692	76235294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_76231772_76231863_76232200_76232278_76232428_76232500_76232635_76234679
63850	chr3	-	1673	1	Antisense	novelGene_ENSMUSG00000028128.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGCCCCCATGCCCCT	3608	False	NA	NA	False	NA	NA	NA	121528698	121527025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_121527000_121528700
63851	chr4	-	2181	9	ISM	ENSMUSG00000039137.19	ENSMUST00000124016.8	2741	12	58186	3	-2092	-3	3prime_fragment	FALSE	canonical	3	12	junction_3	5.7391201416245	28	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGGGCCAGTGTTCTAT	NA	False	NA	NA	False	NA	NA	NA	63353651	63333149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_63333904_63334238_63334362_63334648_63334831_63336324_63336860_63337658_63337731_63350086_63350297_63350901_63351115_63352346_63352384_63353596
63854	chr5	-	436	1	Intergenic	novelGene_861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGTGTATATGGTGCG	3344	False	NA	NA	False	NA	NA	NA	129999662	129999226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_129999200_129999700
63855	chr4	+	2216	2	FSM	ENSMUSG00000043572.8	ENSMUST00000106782.2	502	2	26	-1740	-3	-1	multi-exon	FALSE	canonical	3	39	junction_1	0	230	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTCGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	106508291	106512476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_106508346_106510314
63857	chr10	-	3113	1	Intergenic	novelGene_3449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTTGTTCCTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	61664835	61661722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_61661700_61664800
63858	chr18	-	1930	5	FSM	ENSMUSG00000036225.16	ENSMUST00000168989.9	2777	5	1500	-653	-229	-62	multi-exon	FALSE	canonical	2	9	junction_4	2.1650635094611	21	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATCTGTGTAGAACACAC	NA	False	NA	NA	False	NA	NA	NA	15195175	15101803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_15102753_15107036_15107343_15119392_15119538_15140752_15140932_15194824
63859	chr2	-	3369	12	ISM	ENSMUSG00000090100.8	ENSMUST00000143051.8	3093	15	43504	-841	43478	841	3prime_fragment	FALSE	canonical	3	26	junction_6	7.60708673508074	5	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAACAACATAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	120637367	120575310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_120576771_120578915_120579505_120580718_120580931_120586310_120586528_120590677_120590836_120603709_120603836_120604300_120604394_120608014_120608081_120614175_120614281_120616459_120616601_120620762_120620837_120637239
63860	chr11	-	853	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	0	5	0	-5	multi-exon	FALSE	canonical	3	183	junction_4	11.1214882097676	789	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGAGGCTTTGGATCTTTG	NA	False	NA	NA	False	NA	NA	NA	115382688	115381250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
63862	chr15	+	1925	12	NNC	ENSMUSG00000022364.15	novel	3468	18	NA	NA	78	-154	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	95.181601111153	1	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGGGACACAGGTACAG	NA	False	NA	NA	False	NA	NA	NA	57775712	57817146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_57775788_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806065_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883
63864	chr7	+	1368	7	NNC	ENSMUSG00000033685.14	novel	1116	7	NA	NA	176	323	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	211.021852475572	1	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	NA	False	NA	NA	NA	100143449	100148832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100143549_100145932_100146156_100146301_100146513_100147284_100147480_100147554_100147650_100147942_100148113_100148457
63865	chr7	-	1029	5	FSM	ENSMUSG00000001827.13	ENSMUST00000106982.8	1039	5	-6	16	-6	-16	multi-exon	FALSE	canonical	3	16	junction_4	136.80711787038	42	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTTATGAATTATTTG	4830	False	NA	NA	False	NA	NA	NA	101516620	101507553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101516484
63867	chr11	-	1792	5	NIC	ENSMUSG00000086646.8	novel	937	5	NA	NA	21	904	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	7.59522876548166	31	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTATCTATGTCATTTA	NA	False	NA	NA	False	NA	NA	NA	51111224	51079755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_51081139_51083210_51083353_51089402_51089544_51110284_51110381_51111194
63869	chr14	-	1132	1	ISM	ENSMUSG00000033083.17	ENSMUST00000161991.8	6483	19	165507	35	19697	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	18	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATTTCCAATAAATATGT	NA	False	NA	NA	False	NA	NA	NA	101680962	101679830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_101679800_101681000
63870	chr17	+	2505	1	FSM	ENSMUSG00000043683.5	ENSMUST00000060253.5	6801	1	806	3490	806	-3490	mono-exon	FALSE	NA	NA	NA	NA	NA	32	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGTCTGCCTAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	56564615	56567120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56564600_56567100
63871	chr5	-	2574	12	NNC	ENSMUSG00000087611.2	novel	3055	2	NA	NA	-51662	-5437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	125	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCGCCACCCAACAGGGA	NA	False	NA	NA	False	NA	NA	NA	101046695	100994099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100994224_100994517_100994813_101005005_101005069_101031050_101031322_101032182_101032253_101032822_101032924_101033798_101033885_101037967_101038125_101040155_101040250_101040935_101041073_101041314_101041376_101045580
63875	chr11	+	1505	1	Antisense	novelGene_ENSMUSG00000035455.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCTTTCGAAGTGCGCCT	NA	False	NA	NA	False	NA	NA	NA	11757425	11758930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_11757400_11758900
63876	chr11	-	1834	9	NNC	ENSMUSG00000025158.8	novel	2118	8	NA	NA	127	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	56.9868405862266	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTAGTGTGGCTCCTCTTG	NA	False	NA	NA	False	NA	NA	NA	120674884	120671575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120672035_120672167_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
63879	chr11	+	1090	9	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	-17	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	932.235812107108	1	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCGGCTAGTGGGCCACTT	NA	False	NA	NA	False	NA	NA	NA	9068530	9086052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081766_9083233_9083349_9084721_9084932_9085163_9085311_9085960
63880	chr5	+	894	4	NNC	ENSMUSG00000029462.19	novel	2716	4	NA	NA	-9	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	956.044745582316	2	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTAGACTTTCTTGAAAA	761	False	NA	NA	False	NA	NA	NA	122492513	122501344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122492540_122498075_122498268_122500098_122500335_122500904
63882	chr16	-	967	4	NIC	ENSMUSG00000022760.18	novel	1110	5	NA	NA	-9	-4	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	43.1354455948547	11	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTGCTGTTTGGCTTGG	7258	False	NA	NA	False	NA	NA	NA	17348928	17345945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17346605_17346798_17346940_17348641_17348722_17348841
63883	chr6	-	1747	14	FSM	ENSMUSG00000062995.13	ENSMUST00000038403.12	2075	14	318	10	-12	-10	multi-exon	FALSE	canonical	3	58	junction_8	7.8401183423021	196	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGCTATAGTTATTCACT	378	False	NA	NA	False	NA	NA	NA	8778166	8630536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778071
63884	chr1	-	3420	20	Antisense	novelGene_ENSMUSG00000092563.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	24	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATAAAACAGAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	39402032	39302398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_39302455_39326546_39326697_39331766_39331858_39339722_39339814_39350920_39351043_39352035_39352149_39363519_39363638_39364374_39364457_39365165_39365276_39367387_39367539_39370021_39370101_39372888_39373031_39373781_39373893_39375074_39375176_39377131_39377279_39384347_39384544_39386567_39386761_39387510_39387604_39398727_39398903_39400933
63886	chr8	-	3286	1	Genic_Genomic	ENSMUSG00000043090.19	novel	NA	NA	NA	NA	10302	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	83	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCACTTGTGTCAAATCC	NA	False	NA	NA	False	NA	NA	NA	70217259	70213973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_70214000_70217300
63887	chr8	-	1025	11	NIC	ENSMUSG00000031536.7	novel	1201	14	NA	NA	7	-2	combination_of_known_splicesites	FALSE	canonical	3	7	junction_8	61.4476199701827	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTCTTAACAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	23143444	23118143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23140504_23140572_23143075_23143134_23143329
63888	chr17	+	1890	10	ISM	ENSMUSG00000064043.16	ENSMUST00000190020.4	4275	15	29303	0	29303	0	3prime_fragment	FALSE	canonical	3	22	junction_8	13.3370365227766	38	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTCTCATCTGGGCTA	3776	False	NA	NA	False	NA	NA	NA	47634297	47670388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_47634589_47635513_47635581_47637648_47637789_47637926_47638031_47639943_47640020_47648476_47648566_47651991_47652106_47659575_47659783_47664622_47664871_47669834
63890	chr16	-	2408	1	Intergenic	novelGene_3664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGCTACAATAAACCCTT	5686	False	NA	NA	False	NA	NA	NA	48813039	48810631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_48810600_48813000
63892	chr8	+	2712	4	FSM	ENSMUSG00000031808.8	ENSMUST00000211886.2	2809	4	-55	152	-55	-152	multi-exon	FALSE	canonical	3	145	junction_1	7.36357401145817	10	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAACTGGGCAGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	72023243	72034941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72023533_72032047_72032713_72032788_72032859_72033253
63893	chr19	+	1241	6	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	29	74	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	425.6	1	62	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGGTAATAATTTTCCC	183	False	NA	NA	False	NA	NA	NA	46064347	46072974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46071522_46071770_46071981_46072066_46072189_46072283_46072454
63894	chr9	-	3636	25	NNC	ENSMUSG00000034908.17	novel	4248	26	NA	NA	214	-64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	51.0599967086651	1	162	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGCTACGGTTGCAATT	NA	False	NA	NA	False	NA	NA	NA	45866061	45849236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_45850615_45850704_45850819_45852598_45852710_45853174_45853281_45853493_45853541_45853690_45853768_45853982_45854092_45854348_45854486_45854875_45854994_45855660_45855785_45855913_45855988_45856441_45856509_45856583_45856658_45856963_45857083_45858042_45858115_45858281_45858354_45859133_45859187_45859512_45859607_45861073_45861140_45861330_45861414_45863057_45863142_45863248_45863373_45864037_45864205_45864418_45864545_45866021
63895	chr7	-	2049	17	FSM	ENSMUSG00000047767.18	ENSMUST00000122116.8	2083	17	25	9	3	0	multi-exon	FALSE	canonical	3	10	junction_10	7.54750579661917	45	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCGTGTCTTGCCTC	8419	False	NA	NA	False	NA	NA	NA	100951253	100938832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
63899	chr11	+	1612	1	ISM	ENSMUSG00000040350.17	ENSMUST00000109213.9	2356	7	23417	19	1655	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACAGATTGTGAGCACA	NA	False	NA	NA	False	NA	NA	NA	48740383	48741995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48740400_48742000
63900	chr3	-	429	1	Antisense	novelGene_ENSMUSG00000039988.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTGATCCTCCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	157704617	157704188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_157704200_157704600
63902	chr4	-	873	8	NNC	ENSMUSG00000028822.12	novel	1204	7	NA	NA	93	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	228.444071662083	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTCTTTCTCGTTATAC	NA	False	NA	NA	False	NA	NA	NA	134642233	134625162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134625353_134625578_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
63903	chr2	-	828	3	NIC	ENSMUSG00000076437.12	novel	747	4	NA	NA	-25	-4	intron_retention	FALSE	canonical	3	1785	junction_1	326.5	191	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATAAGGAGCAAGTTTAA	333	False	NA	NA	False	NA	NA	NA	84501077	84499568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84499742_84500330_84500735_84500826
63904	chr9	+	975	2	NNC	ENSMUSG00000010607.9	novel	676	2	NA	NA	-36	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGAAAAATACTTTTC	NA	False	NA	NA	False	NA	NA	NA	22068205	22069585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22068623_22069027
63907	chr3	-	851	10	NNC	ENSMUSG00000027752.16	novel	1300	11	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_3	672.153384905191	47	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTAGTCCTTACGTTG	NA	False	NA	NA	False	NA	NA	NA	54642469	54636100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_54636315_54636614_54636722_54637185_54637302_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
63908	chr6	+	2039	5	NIC	ENSMUSG00000053460.9	novel	2014	13	NA	NA	1187	-6	intron_retention	FALSE	canonical	3	38	junction_4	6.74536878161602	3	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCACTACCTGGCTTAT	9005	False	NA	NA	False	NA	NA	NA	72404786	72407689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
63909	chr10	-	1946	15	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4494	-1148	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	4.04817923294422	47	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGGCTGTGTAACAAAGG	NA	False	NA	NA	False	NA	NA	NA	75951289	75894475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75894734_75896182_75896289_75898047_75898264_75899787_75899957_75906337_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75945851_75945924_75951237
63910	chr12	-	1048	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-20	83	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	38.0029238641216	114	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGATATTGTATAGACTG	NA	False	NA	NA	False	NA	NA	NA	73333504	73327171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_73327407_73329385_73329511_73331408_73332050_73333457
63911	chr11	+	2881	8	NNC	ENSMUSG00000020712.12	novel	3059	8	NA	NA	-3121	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.01018678652935	1	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCTTTTCCCGTTATCG	4070	False	NA	NA	False	NA	NA	NA	106164376	106178967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106164478_106172728_106172805_106173612_106173880_106174868_106175190_106175381_106175661_106176197_106176468_106177201_106177445_106177643
63912	chr11	+	952	1	NIC	ENSMUSG00000078706.5	novel	757	3	NA	NA	2282	-25	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGTGTGTGCGAATCT	NA	False	NA	NA	False	NA	NA	NA	96154717	96155669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_96154700_96155700
63913	chr14	+	1650	9	Antisense	novelGene_ENSMUSG00000022052.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTGGCCGGTGACGTC	NA	False	NA	NA	False	NA	NA	NA	67253753	67309896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_67254105_67257166_67257253_67259718_67259893_67260474_67260640_67261081_67261258_67261974_67262083_67266303_67266482_67307704_67307758_67309537
63915	chr8	+	1601	2	FSM	ENSMUSG00000045969.9	ENSMUST00000054399.6	2814	2	806	407	761	-405	multi-exon	FALSE	canonical	3	454	junction_1	0	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGAGCTGTATAGATG	NA	False	NA	NA	False	NA	NA	NA	11606871	11612844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_11607046_11611417
63917	chr9	+	1389	3	FSM	ENSMUSG00000032417.11	ENSMUST00000034988.10	1355	3	-37	3	-12	-3	multi-exon	FALSE	canonical	3	7	junction_1	22.5	114	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCAACTTGTCTCAAGTC	NA	False	NA	NA	False	NA	NA	NA	86454031	86456949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_86454271_86454889_86455117_86456026
63920	chr9	+	1331	2	Genic_Genomic	ENSMUSG00000062309.9	novel	1423	1	NA	NA	21	-1	multi-exon	FALSE	canonical	3	12	junction_1	0	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTTCAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	57411329	57412730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_57411538_57411607
63922	chr15	+	995	6	Antisense	novelGene_ENSMUSG00000022323.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1067	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGGCCCGATGGGAATTG	NA	False	NA	NA	False	NA	NA	NA	34484167	34495392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_34484684_34485746_34485802_34486756_34486826_34487887_34487945_34488721_34488826_34495198
63923	chr6	-	2212	15	NIC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	0	277	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	95.3788364836749	63	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATGCTTAGGATATTTG	NA	False	NA	NA	False	NA	NA	NA	39354609	39320566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349012_39349072_39349780_39349862_39354552
63924	chr14	+	2262	5	NNC	ENSMUSG00000021750.17	novel	2093	4	NA	NA	438	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1.5	11	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTGGTAAAGCCATTGT	NA	False	NA	NA	False	NA	NA	NA	14152187	14173487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_14152269_14168539_14168715_14170106_14170264_14170975_14171975_14172637
63925	chr10	+	363	1	ISM	ENSMUSG00000034612.8	ENSMUST00000040110.8	5527	3	209992	48	209992	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTTTCTAAGTAACTT	NA	False	NA	NA	False	NA	NA	NA	83031323	83031686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_83031300_83031700
63927	chr2	+	1329	4	NIC	ENSMUSG00000037262.8	novel	1472	5	NA	NA	-7	-137	combination_of_known_splicesites	TRUE	canonical	2	2	junction_2	22.2261107708929	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATAAAATCTATGTTTT	4787	False	NA	NA	False	NA	NA	NA	10085396	10097480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_10085556_10090540_10090636_10095051_10095175_10096528
63928	chr4	-	1490	10	FSM	ENSMUSG00000028845.16	ENSMUST00000030658.13	1492	10	4	-2	4	0	multi-exon	FALSE	canonical	2	5	junction_7	3.60383883116152	74	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCTCTTTTCTGCTAC	3584	False	NA	NA	False	NA	NA	NA	126218988	126215913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595_126218802_126218926
63929	chr7	+	2435	1	NIC	ENSMUSG00000004610.5	novel	893	6	NA	NA	1	-10008	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTTATACAGCACTGTT	1956	False	NA	NA	False	NA	NA	NA	43093554	43095989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43093600_43096000
63930	chrX	+	2495	1	Antisense	novelGene_ENSMUSG00000031433.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGCACATGAAGGTTAAC	NA	False	NA	NA	False	NA	NA	NA	138854376	138856871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_138854400_138856900
63931	chr15	-	854	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	12	797	12	152	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAACGTCTACTTTTAG	NA	False	NA	NA	False	NA	NA	NA	81756100	81749517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
63933	chr11	-	1830	11	Antisense	novelGene_ENSMUSG00000025372.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGGAGAGGAGAGAGTAGT	NA	False	NA	NA	False	NA	NA	NA	119897603	119850979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_119851069_119871613_119871673_119872216_119872285_119872810_119872950_119884518_119884669_119887343_119887573_119887713_119887915_119888311_119888517_119889459_119889527_119889958_119890160_119897181
63935	chr10	+	1029	7	ISM	ENSMUSG00000019823.18	ENSMUST00000099934.11	3292	23	8613	4	907	-2	3prime_fragment	FALSE	canonical	3	163	junction_1	26.9732377655252	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGGGTTTATGCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	41360976	41363024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
63936	chrX	+	959	4	NNC	ENSMUSG00000051257.4	novel	1178	3	NA	NA	164	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	1325.40115520631	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGTTGTTTCACGTTAA	NA	False	NA	NA	False	NA	NA	NA	138234595	138238915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_138235157_138237570_138237800_138238694_138238746_138238797
63937	chr7	+	1367	8	NIC	ENSMUSG00000003184.16	novel	2031	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	54.0181375435461	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	NA	False	NA	NA	NA	44647071	44651814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650241_44651096_44651213_44651587
63938	chr14	-	912	2	Antisense	novelGene_ENSMUSG00000071229.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	151	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGGAAGTGCCCCACCCAC	NA	False	NA	NA	False	NA	NA	NA	122275829	122272083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_122272423_122275256
63939	chr3	-	1952	1	Antisense	novelGene_ENSMUSG00000033014.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCTCAAACCTGTTAAAAG	NA	False	NA	NA	False	NA	NA	NA	103266069	103264117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_103264100_103266100
63940	chrX	-	1696	5	NNC	ENSMUSG00000056537.12	novel	7429	5	NA	NA	-1	-5772	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	79.1308252200114	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTCCTAGCCCCAGTTC	2372	False	NA	NA	False	NA	NA	NA	103024891	103006540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_103007688_103008856_103008941_103010096_103010287_103022878_103022941_103024678
63941	chr12	+	2242	19	NIC	ENSMUSG00000071454.14	novel	2820	20	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	85.0941562746747	104	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGCCTGTGTGTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	3622535	3831394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3829618_3829655_3831105
63946	chr10	-	666	1	Genic_Genomic	ENSMUSG00000006342.16	novel	NA	NA	NA	NA	6667	58	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAATAGCATCAGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	75473147	75472481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_75472500_75473100
63947	chr15	-	2240	3	FSM	ENSMUSG00000016624.16	ENSMUST00000159502.2	324	3	74	-1990	74	0	multi-exon	FALSE	canonical	2	7	junction_2	3.5	14	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGGTGGTCCTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	84675621	84669581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_84671651_84675265_84675370_84675554
63948	chr7	-	1630	1	FSM	ENSMUSG00000070462.5	ENSMUST00000094216.5	4433	1	1154	1649	1154	-1649	mono-exon	FALSE	NA	NA	NA	NA	NA	173	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGGCTTTTCGCAGTTA	NA	False	NA	NA	False	NA	NA	NA	83532359	83530729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_83530700_83532400
63951	chr12	+	438	6	ISM	ENSMUSG00000060073.10	ENSMUST00000071704.4	875	11	12182	-28	5	-1	3prime_fragment	FALSE	canonical	3	3391	junction_3	146.780925191252	32	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGTTGGGTAATTGAAG	NA	False	NA	NA	False	NA	NA	NA	71033670	71041277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
63952	chrX	-	1544	8	FSM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	-36	0	-36	0	multi-exon	FALSE	canonical	3	80	junction_7	14.6816559150582	376	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	150799327	150787577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
63955	chr8	+	460	1	ISM	ENSMUSG00000031511.17	ENSMUST00000110909.9	4926	19	98584	1	-3549	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTTGGCTTTTAATATT	NA	False	NA	NA	False	NA	NA	NA	11876688	11877148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_11876700_11877100
63956	chr7	-	886	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	-12	-4	-12	0	multi-exon	FALSE	canonical	3	739	junction_6	21.1850314032233	2348	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9245	False	NA	NA	False	NA	NA	NA	30428977	30427125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
63957	chr17	+	1192	7	NNC	ENSMUSG00000025736.16	novel	2268	9	NA	NA	811	1104	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACTTCCGGTGTGGGGCG	NA	False	NA	NA	False	NA	NA	NA	26049623	26051921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26049991_26050081_26050193_26050282_26050339_26050516_26050605_26050768_26050884_26051019_26051219_26051665
63958	chr14	+	1944	1	ISM	ENSMUSG00000040717.7	ENSMUST00000035336.5	8280	13	66386	16	17562	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	1	78	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTTTCTTGTAAGCCT	NA	False	NA	NA	False	NA	NA	NA	26827283	26829227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_26827300_26829200
63959	chr4	-	1163	6	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	8457	1	5080	-1	3prime_fragment	FALSE	canonical	3	33	junction_5	1.6	122	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACTGTTCACCCATCTT	NA	False	NA	NA	False	NA	NA	NA	141117058	141111921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627
63960	chr8	+	1587	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	-3	-4	2	4	multi-exon	FALSE	canonical	3	85	junction_1	49.2958754190788	430	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTTTGGCAATCCTTTA	2146	False	NA	NA	False	NA	NA	NA	123951601	123958993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
63961	chr15	-	1262	2	FSM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	14	0	-8	0	multi-exon	FALSE	canonical	3	84	junction_1	0	277	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGTCGTTTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	99372597	99367959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99368961_99372336
63963	chr10	-	1515	9	NNC	ENSMUSG00000000902.14	novel	1622	9	NA	NA	90	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	365.303790529198	1	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGTGCAGTAGCATAAA	6979	False	NA	NA	False	NA	NA	NA	75757333	75732606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75732923_75733278_75733411_75740217_75740409_75741859_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
63964	chr12	+	1806	4	NNC	ENSMUSG00000020571.14	novel	436	3	NA	NA	-6	1405	intron_retention	FALSE	non_canonical	0	0	junction_3	1421.27360725044	7	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGATCTGTGAAATGATG	NA	False	NA	NA	False	NA	NA	NA	17316589	17325600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17316653_17320396_17320539_17323945_17324731_17324784
63965	chr9	-	1527	8	NIC	ENSMUSG00000066839.13	novel	1673	9	NA	NA	-1	-4	combination_of_known_splicesites	FALSE	canonical	2	13	junction_6	84.8771020298148	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTCCCTGGCCCTGTGG	5920	False	NA	NA	False	NA	NA	NA	21996699	21983545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21995318_21995505_21996644
63966	chr5	-	1820	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	200	69	94	-65	multi-exon	FALSE	canonical	3	213	junction_6	10.0788557551606	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACCCTGACTTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	116162321	116151713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
63967	chr6	-	1311	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5553	-2	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_4	53.4462346662513	15	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGATTTAGGCGGACTTT	2837	False	NA	NA	False	NA	NA	NA	83674972	83669789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672939_83673961_83674051_83674907
63968	chr7	+	1199	11	FSM	ENSMUSG00000030763.8	ENSMUST00000033025.7	1369	11	152	18	78	-4	multi-exon	FALSE	canonical	0	0	junction_5	88.7783757454483	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTCAGACTCTGCTAC	6976	False	NA	NA	False	NA	NA	NA	122977356	123029563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003708_123009946_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
63969	chr15	+	2696	13	ISM	ENSMUSG00000036661.15	ENSMUST00000173292.8	5172	24	-36	24152	-36	-9765	5prime_fragment	FALSE	canonical	3	9	junction_4	5.63409758129512	14	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTATGTTGTATACAATA	NA	False	NA	NA	False	NA	NA	NA	73384484	73419796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_73384697_73394078_73394356_73395287_73395404_73395987_73396122_73399764_73399877_73404667_73404788_73405109_73405329_73409138_73409261_73412541_73412698_73414568_73414666_73416206_73416311_73416794_73416995_73418969
63971	chr6	+	1295	4	NNC	ENSMUSG00000039958.18	novel	1558	5	NA	NA	2386	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	12.0830459735946	4	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAACTCAAGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	149045529	149052669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_149045941_149048655_149048787_149051839_149051930_149052006
63973	chr4	-	2432	3	NNC	ENSMUSG00000078511.4	novel	1684	3	NA	NA	-8741	383	intron_retention	TRUE	canonical	0	0	junction_2	1	4	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAATAATAACAATAATACC	NA	False	NA	NA	False	NA	NA	NA	143686327	143674766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_143676777_143677251_143677566_143686219
63974	chr14	-	431	1	Intergenic	novelGene_548	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTACCATCTTTCTGAGCT	NA	False	NA	NA	False	NA	NA	NA	41309247	41308816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_41308800_41309200
63975	chr6	+	1993	11	NNC	ENSMUSG00000029798.12	novel	4767	23	NA	NA	27060	-1139	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5.36283507111677	27	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATGCTTGCAAAGCTT	5056	False	NA	NA	False	NA	NA	NA	57614870	57640478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_57614986_57623111_57623217_57624049_57624158_57629016_57629155_57631373_57631518_57634993_57635161_57636660_57636725_57637075_57637147_57639050_57639235_57639327_57639431_57639684
63977	chr11	-	1293	4	NNC	ENSMUSG00000018849.7	novel	4531	23	NA	NA	11303	-9	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	143.815468183672	235	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAAAGAGCTTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	35733078	35729235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_35730072_35731136_35731259_35732580_35732815_35732977
63978	chr14	-	1598	5	NIC	ENSMUSG00000033166.12	novel	2971	20	NA	NA	-4012	-1006	intron_retention	FALSE	canonical	3	428	junction_4	30.5941170815567	5	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAGAACCACAGGTGAGA	NA	False	NA	NA	False	NA	NA	NA	99320131	99315711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085
63979	chr18	-	640	5	NNC	ENSMUSG00000024346.7	novel	1109	4	NA	NA	2	117	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1336.95876899776	49	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATGGCATGTGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	36587575	36537140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_36537330_36537384_36537514_36565358_36565444_36584132_36584300_36587505
63980	chr8	+	2900	26	Antisense	novelGene_ENSMUSG00000070000.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	16	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGACCCGCGCCCCGCC	161	False	NA	NA	False	NA	NA	NA	72161285	72178301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_72161478_72161571_72161734_72161972_72162033_72162221_72162419_72162637_72162773_72162984_72163139_72163641_72163753_72163849_72163940_72164039_72164144_72164694_72164937_72165112_72165209_72165543_72165627_72166057_72166238_72166620_72166680_72167315_72167417_72167526_72167577_72168123_72168222_72168331_72168433_72169203_72169305_72169414_72169571_72169787_72169927_72170078_72170154_72170929_72171025_72173896_72173949_72174462_72174506_72178277
63981	chr2	-	1976	5	NNC	ENSMUSG00000038400.16	novel	720	5	NA	NA	-3656	1226	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	50.1846590104984	82	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTAGTTTTTTTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	173080171	173068612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_173070137_173070368_173070420_173076099_173076255_173079556_173079686_173080054
63982	chr6	+	4429	2	Antisense	novelGene_ENSMUSG00000061838.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	115	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTACTCAATCTCTTGGC	NA	False	NA	NA	False	NA	NA	NA	95626882	95632431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_95628178_95629297
63983	chr15	+	1265	3	ISM	ENSMUSG00000022587.15	ENSMUST00000191127.7	575	5	357	-671	-36	0	intron_retention	FALSE	canonical	3	397	junction_1	126.5	2564	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8351	False	NA	NA	False	NA	NA	NA	74827465	74831180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_74827567_74829625_74829727_74830117
63984	chr15	+	2078	12	FSM	ENSMUSG00000022561.14	ENSMUST00000023221.13	2107	12	20	9	20	0	multi-exon	TRUE	non_canonical	3	197	junction_6	31.5777932223483	1	109	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTGGGATCCTGGCCCG	4733	False	NA	NA	False	NA	NA	NA	76215450	76219098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
63985	chr10	-	710	6	ISM	ENSMUSG00000060002.15	ENSMUST00000139109.8	1447	9	15370	2628	-7647	-2628	internal_fragment	FALSE	canonical	3	100	junction_3	15.5743378671454	10	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACATCTTCAAGACTTCA	NA	False	NA	NA	False	NA	NA	NA	88324381	88311328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243
63986	chr10	-	1331	1	NIC	ENSMUSG00000060002.15	novel	630	4	NA	NA	925	-1346	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACTGTCCTTTTAATGT	NA	False	NA	NA	False	NA	NA	NA	88311377	88310046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_88310000_88311400
63987	chr9	-	1396	3	ISM	ENSMUSG00000042757.17	ENSMUST00000189066.2	2145	6	8825	14574	8821	7656	internal_fragment	FALSE	canonical	3	18	junction_2	6.5	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGACCTCTCTCCACAGT	NA	False	NA	NA	False	NA	NA	NA	103630168	103376208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_103377408_103486909_103486992_103630053
63988	chr9	-	442	2	FSM	ENSMUSG00000042757.17	ENSMUST00000191069.2	4768	2	4322	4	4322	-4	multi-exon	FALSE	canonical	3	48	junction_1	0	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAAAGCGGTTGCACTGA	NA	False	NA	NA	False	NA	NA	NA	103366488	103361641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_103361983_103366387
63990	chr17	+	1283	10	Antisense	novelGene_ENSMUSG00000036820.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCGGCAGAGCCCGGAGCA	NA	False	NA	NA	False	NA	NA	NA	24374816	24382674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24375060_24375544_24375646_24376500_24376570_24376712_24376821_24376890_24377037_24377117_24377211_24377287_24377496_24377612_24377667_24381947_24382088_24382553
63991	chr15	-	2012	11	NNC	ENSMUSG00000079105.5	novel	2676	18	NA	NA	37282	122	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0.5	5	10	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAACCCCAGCCCAGATT	7809	False	NA	NA	False	NA	NA	NA	5055940	5018121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_5018489_5019792_5019978_5023638_5023733_5032135_5032328_5034663_5034797_5037127_5037216_5040362_5040535_5041415_5041645_5044776_5044944_5052067_5052182_5055669
63992	chr14	-	883	6	FSM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	-221	5531	-22	3	multi-exon	FALSE	canonical	3	520	junction_3	59.8618409339372	3527	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGATGCTTTTCCACATCA	NA	False	NA	NA	False	NA	NA	NA	78112587	78063651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
63993	chr3	-	1493	1	Genic_Genomic	ENSMUSG00000001420.14	novel	NA	NA	NA	NA	-88	-1606	mono-exon	FALSE	NA	NA	NA	NA	NA	49	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTTGCAGTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	88243543	88242050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_88242000_88243500
63995	chr9	-	3024	1	Intergenic	novelGene_1008	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGAGAAAATTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	32047537	32044513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_32044500_32047500
63996	chr4	+	820	6	Antisense	novelGene_ENSMUSG00000057236.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTCGTGCGTTGCAGGA	NA	False	NA	NA	False	NA	NA	NA	129203329	129229060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129203670_129216593_129216665_129222383_129222530_129225649_129225713_129228287_129228437_129229009
63997	chr8	+	1159	8	NNC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	20	171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	714.423186770921	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGCGTCATCGTGCCAC	NA	False	NA	NA	False	NA	NA	NA	95584165	95590540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588517_95589148_95589318_95589437_95589513_95590079
63998	chr6	-	998	9	NIC	ENSMUSG00000059900.15	novel	843	11	NA	NA	-7086	3	combination_of_known_splicesites	FALSE	canonical	3	15	junction_8	19.4225223645128	235	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTCGACTAAATAT	NA	False	NA	NA	False	NA	NA	NA	115719340	115706098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270
63999	chr1	+	2109	14	ISM	ENSMUSG00000026407.18	ENSMUST00000112068.10	6018	43	52997	57	375	-51	3prime_fragment	TRUE	canonical	0	0	junction_1	1.16659622216178	10	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCCACTCTATCTAGCT	NA	False	NA	NA	False	NA	NA	NA	136033518	136047216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_136033588_136034139_136034232_136034754_136034915_136035817_136035946_136038603_136038701_136039715_136039819_136040647_136040750_136041020_136041146_136042885_136043015_136043662_136043914_136045344_136045431_136046073_136046166_136046398_136046552_136046694
64001	chr6	-	1074	5	ISM	ENSMUSG00000030345.17	ENSMUST00000078521.7	2252	15	36440	-2	-15	2	3prime_fragment	FALSE	canonical	2	4	junction_4	3.57071421427143	68	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTGTCAATCTATGCC	NA	False	NA	NA	False	NA	NA	NA	126862362	126852980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_126853514_126854122_126854302_126857187_126857318_126860989_126861051_126862191
64002	chr7	+	1192	8	FSM	ENSMUSG00000030851.16	ENSMUST00000014545.11	1370	8	34	144	34	-102	multi-exon	FALSE	canonical	1	3	junction_1	3.73619909446343	49	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCAAGGCTAGAAAGATTA	NA	False	NA	NA	False	NA	NA	NA	46510660	46527422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46510726_46511186_46511320_46515832_46515951_46519022_46519197_46522335_46522510_46525099_46525218_46525897_46526022_46527136
64003	chr2	+	2269	3	NNC	ENSMUSG00000026965.13	novel	3004	13	NA	NA	4045	-309	intron_retention	FALSE	non_canonical	0	0	junction_1	290	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGTATTTTGTTGGA	NA	False	NA	NA	False	NA	NA	NA	25173049	25175618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_25173809_25174030_25175185_25175262
64004	chr7	+	1435	8	NIC	ENSMUSG00000030714.15	novel	777	9	NA	NA	10	-25	intron_retention	FALSE	canonical	3	419	junction_3	32.3103572198369	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATAAATACTCTTCCC	134	False	NA	NA	False	NA	NA	NA	126248503	126271926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126271053_126271209_126271246_126271327
64005	chr8	+	2066	2	FSM	ENSMUSG00000097000.3	ENSMUST00000181452.2	2994	2	3	925	3	-925	multi-exon	FALSE	canonical	3	10	junction_1	0	23	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGTTATTTATATAAATA	NA	False	NA	NA	False	NA	NA	NA	73246780	73258418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_73246895_73256466
64007	chr4	+	1191	12	NNC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	15	15026	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	175.131025329774	1	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAACCGCCAGCACCACT	NA	False	NA	NA	False	NA	NA	NA	44300890	44340719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44301073_44303570_44303625_44306031_44306118_44306991_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625
64011	chr4	-	1471	7	FSM	ENSMUSG00000028972.12	ENSMUST00000105683.9	1460	7	-11	0	-11	0	multi-exon	FALSE	canonical	3	16	junction_1	3.44802681092953	102	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTACTATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	150282938	150271471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_150271966_150273577_150273702_150276931_150277090_150278164_150278235_150280512_150280606_150281774_150281924_150282555
64012	chr7	+	761	4	NNC	ENSMUSG00000097277.8	novel	725	4	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	40.7458245986288	325	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGGTATTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	81173294	81181250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81173429_81178534_81178689_81179094_81179276_81180958
64013	chr11	+	864	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	-30	15	-16	-15	multi-exon	FALSE	canonical	3	60	junction_6	239.545866635645	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATTCCAAGTTATTTTT	3247	False	NA	NA	False	NA	NA	NA	95925760	95938241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
64014	chr17	-	1555	13	FSM	ENSMUSG00000038781.8	ENSMUST00000043785.8	1509	13	-50	4	-50	1	multi-exon	FALSE	canonical	1	3	junction_8	11.0839598820398	136	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCCATGTGGCTGTAG	NA	False	NA	NA	False	NA	NA	NA	56312634	56304080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56306809_56306912_56307016_56307086_56307157_56307479_56307615_56307900_56308002_56309011_56309069_56309852_56309976_56310129_56310202_56312429
64015	chr5	+	1990	12	Intergenic	novelGene_723	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	68	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGAGATGGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	66459250	66557627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_66460053_66464877_66465060_66466422_66466546_66468348_66468427_66469501_66469590_66470657_66470772_66520059_66520114_66520146_66520190_66522313_66522464_66548969_66549031_66549114_66549200_66557417
64016	chr16	+	2674	3	ISM	ENSMUSG00000009569.15	ENSMUST00000149359.2	8295	15	39904	14465	39904	-11999	internal_fragment	FALSE	canonical	3	22	junction_1	4.5	1	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATCCCAAAGCAAACAGT	NA	False	NA	NA	False	NA	NA	NA	13216188	13220928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_13216351_13217943_13218044_13218516
64017	chr8	-	533	3	NIC	ENSMUSG00000035559.10	novel	308	3	NA	NA	16	274	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	343	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCAACTGGTCAGTAGCC	NA	False	NA	NA	False	NA	NA	NA	71213576	71212748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_71212900_71213013_71213185_71213365
64018	chr4	+	1160	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106650.9	3327	5	29	2138	29	1	multi-exon	FALSE	canonical	3	36	junction_4	5.5	239	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAACCTGCTTGTTTCCTA	NA	False	NA	NA	False	NA	NA	NA	108736288	108798383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786724_108797822
64019	ERCC-00004	+	507	1	FSM	ERCC-00004A	DQ516752	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3058	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00004_+_0_500
64020	chr5	+	1476	4	ISM	ENSMUSG00000036817.15	ENSMUST00000135926.2	768	6	7205	-1090	-1629	1090	3prime_fragment	FALSE	canonical	3	760	junction_1	25.7207222984806	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTGACAGAAAAATCTGAG	1946	False	NA	NA	False	NA	NA	NA	139219702	139222470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_139219750_139220269_139220329_139220441_139220588_139221246
64021	chr14	+	1458	4	Antisense	novelGene_ENSMUSG00000071470.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	419	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCGCAAGGCCTGATGGG	NA	False	NA	NA	False	NA	NA	NA	51026706	51033171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_51027469_51029467_51029760_51031006_51031331_51033091
64022	chr7	-	1556	15	NNC	ENSMUSG00000030720.17	novel	2487	17	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	59.3867040021998	1	63	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTTTTGTGCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	126182534	126171259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179320_126179402_126179504_126179611_126180817_126180915_126181935_126182015_126182171_126182269_126182474
64024	SIRV4	-	327	4	ISM	SIRV4A	SIRV408	570	5	1434	0	249	0	3prime_fragment	FALSE	canonical	3	3524	junction_2	1753.79436270809	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTGATATTTAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	13688	8323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV4_-_8373_8629_8748_8846_8991_13672
64026	chrX	+	3516	1	FSM	ENSMUSG00000031227.9	ENSMUST00000033578.7	3550	1	14	20	14	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	15	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATAATGCTAATCCACT	NA	False	NA	NA	False	NA	NA	NA	104163997	104167513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_104164000_104167500
64027	chr17	-	1252	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	41	0	41	0	multi-exon	FALSE	canonical	3	184	junction_5	90.4765162901402	461	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	NA	False	NA	NA	NA	36208282	36203568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
64028	chr11	-	2662	1	ISM	ENSMUSG00000020387.16	ENSMUST00000020655.14	6273	12	41535	2	41007	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	27	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCTGCCATGACGTTCT	NA	False	NA	NA	False	NA	NA	NA	51706945	51704283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51704300_51706900
64031	chr15	-	3008	17	ISM	ENSMUSG00000022475.20	ENSMUST00000088402.12	4223	24	23310	2	-473	-2	3prime_fragment	FALSE	canonical	2	9	junction_9	4.81168824322607	32	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTTTTATTTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	97706338	97690563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_97691624_97691810_97691947_97693627_97693713_97693978_97694113_97694713_97694833_97695821_97695920_97696104_97696225_97697437_97697526_97697641_97697698_97698575_97698684_97699956_97700007_97700310_97700432_97700563_97700698_97704346_97704549_97705474_97705670_97705845_97706043_97706233
64032	chr4	+	1909	5	ISM	ENSMUSG00000028646.17	ENSMUST00000155757.8	2950	7	3631	0	-177	0	3prime_fragment	FALSE	canonical	3	506	junction_4	18.7533330370897	87	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGTTTGTTGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	123814897	123830786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_123814944_123817752_123817868_123818539_123818683_123823624_123823774_123829330
64033	chr1	+	2145	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	18	0	18	0	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	589	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGACTGATTTCTG	NA	False	NA	NA	False	NA	NA	NA	165591332	165602877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
64034	chr19	-	1005	1	Genic_Genomic	ENSMUSG00000024944.7	novel	NA	NA	NA	NA	225	-2441	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGACTGTTGGGCAGGT	NA	False	NA	NA	False	NA	NA	NA	6190945	6189940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_6189900_6190900
64036	chr7	-	2637	18	ISM	ENSMUSG00000053158.11	ENSMUST00000080932.8	2762	19	572	46	45	-31	3prime_fragment	FALSE	canonical	0	0	junction_16	5.0396352919068	43	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCTCTCTTAGGCAGAA	NA	False	NA	NA	False	NA	NA	NA	80037122	80027551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565_80029661_80029956_80030076_80030586_80030641_80030912_80031036_80031348_80031559_80032060_80032145_80032268_80032456_80032558_80032682_80032817_80032938_80033016_80033155_80033581_80033766_80033938_80034036_80036558_80036733_80036869
64037	chr6	-	972	4	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-5	1697	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	209.587425407368	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCAAATCTTTGATGATG	NA	False	NA	NA	False	NA	NA	NA	115014821	115006541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_115007025_115009178_115009274_115011911_115012095_115014610
64038	chr6	+	1179	1	Antisense	novelGene_ENSMUSG00000063455.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTCCAGAGCTCAGGGGA	NA	False	NA	NA	False	NA	NA	NA	38102954	38104133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_38103000_38104100
64040	chr10	+	1494	4	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	6674	3	6674	-3	3prime_fragment	FALSE	canonical	3	84	junction_1	10.6249183003395	93	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACTGCCACAGCCCGAT	2564	False	NA	NA	False	NA	NA	NA	79864250	79867293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79864718_79864806_79865018_79866122_79866211_79866565
64041	chr5	+	1744	1	Intergenic	novelGene_717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCTGACATTCTATAGC	2223	False	NA	NA	False	NA	NA	NA	54052442	54054186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_54052400_54054200
64042	chr16	-	2088	10	FSM	ENSMUSG00000023143.11	ENSMUST00000023911.11	2143	10	51	4	41	-4	multi-exon	FALSE	canonical	3	106	junction_1	7.98764478027175	44	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAGCCACCAGGGGGC	NA	False	NA	NA	False	NA	NA	NA	5021825	5013156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204_5021664_5021760
64043	chr1	-	609	1	Intergenic	novelGene_437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCTGGGTTTACTTTAT	NA	False	NA	NA	False	NA	NA	NA	120014502	120013893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_120013900_120014500
64044	chr8	+	1369	6	NNC	ENSMUSG00000003812.14	novel	1715	6	NA	NA	21	-188	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	33.7970412906219	9	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATTAAAGGCATGCGCC	NA	False	NA	NA	False	NA	NA	NA	85635380	85637902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635571_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
64045	chr11	+	887	8	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	4	417	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	49.0821884647557	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCGCTCAGAGCCGGCTG	3575	False	NA	NA	False	NA	NA	NA	100973454	100976863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100973517_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823
64047	chr7	+	2026	21	ISM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	23	1817	2	-188	5prime_fragment	TRUE	canonical	3	88	junction_1	21.0933046249278	17	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGCAAGACGGACTATGG	NA	False	NA	NA	False	NA	NA	NA	19115957	19127802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_19115985_19116203_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700
64048	chr6	-	906	7	NNC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	78.5443965042843	21	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	83483902	83457198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464023_83467463_83467591_83473667_83473781_83483729
64050	chr9	+	1470	1	NIC	ENSMUSG00000010607.9	novel	695	2	NA	NA	20	10	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	66	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGACCAGCCTTCATCCAAA	NA	False	NA	NA	False	NA	NA	NA	22068161	22069631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_22068200_22069600
64051	chr5	+	2339	9	ISM	ENSMUSG00000037795.15	ENSMUST00000201615.4	4767	14	33	10574	33	2503	5prime_fragment	FALSE	canonical	3	26	junction_3	21.6101827849743	37	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCTATCAAATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	65921495	65964053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65921589_65928729_65928785_65932927_65933007_65947360_65948514_65950671_65950797_65951863_65951953_65955433_65955511_65960763_65960911_65963532
64052	chr16	+	1965	9	NIC	ENSMUSG00000039200.17	novel	1230	10	NA	NA	-3	824	intron_retention	FALSE	canonical	3	9	junction_8	39.2364626336269	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAGCCTGAGCTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	10010807	10059502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10058424
64053	chr13	-	1228	10	NNC	ENSMUSG00000045273.9	novel	1251	9	NA	NA	-26	-26	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_6	138.91484201961	280	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGCATTATTAACTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	100912317	100896207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100907981_100908075_100908162_100908212_100909233_100909290_100912194
64055	chr15	-	1522	3	NNC	ENSMUSG00000058794.13	novel	1605	3	NA	NA	519	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	6.5	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTTTCTATTGTGTCTTC	7319	False	NA	NA	False	NA	NA	NA	103160718	103156643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_103157876_103159355_103159526_103160598
64058	chr9	-	1319	4	ISM	ENSMUSG00000032609.13	ENSMUST00000194633.2	801	5	594	-619	594	9	3prime_fragment	FALSE	canonical	3	8	junction_1	2.05480466765633	10	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGCTCAAATCTGGTG	NA	False	NA	NA	False	NA	NA	NA	108326974	108324847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_108325685_108326024_108326127_108326265_108326491_108326819
64059	chr11	-	1252	9	NNC	ENSMUSG00000017176.18	novel	1399	9	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	178.252235259477	1	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	100331725	100320179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100320450_100320521_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654
64060	chr5	-	1791	3	ISM	ENSMUSG00000072591.11	ENSMUST00000154305.8	2429	6	32	6186	-1	-1112	5prime_fragment	FALSE	canonical	1	1	junction_2	5.5	37	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCATGTCCCTCAAG	NA	False	NA	NA	False	NA	NA	NA	128677719	128662355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_128662471_128671271_128672829_128677600
64061	chr9	-	912	6	NNC	ENSMUSG00000032436.18	novel	993	5	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	542.439084137565	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCAGGTTTCCTTATTG	NA	False	NA	NA	False	NA	NA	NA	114610893	114585910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114586260_114586309_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
64062	chr2	+	1608	9	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	53.7558136390847	163	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	179712382	179727695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_179712409_179713586_179713680_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
64063	chr7	+	1324	10	NNC	ENSMUSG00000030802.15	novel	3405	12	NA	NA	304	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	191.914011094347	1	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGGGAGGGCAGGCGAG	NA	False	NA	NA	False	NA	NA	NA	127504392	127507794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506645_127506704_127507092_127507252_127507338
64064	chr1	+	1681	9	NIC	ENSMUSG00000026150.15	novel	1706	8	NA	NA	26	-3	combination_of_known_junctions	FALSE	canonical	1	3	junction_5	203.601172639059	41	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAGCAATGTCTATGGA	NA	False	NA	NA	False	NA	NA	NA	82702694	82730105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713136_82713229_82723244_82723278_82724803_82724864_82728240_82728326_82729305
64066	chr1	+	2035	6	ISM	ENSMUSG00000026470.15	ENSMUST00000027743.13	4589	8	19156	2154	-6439	1258	3prime_fragment	TRUE	canonical	3	152	junction_5	21.4158819570897	40	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAACAATTTTTAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	155053616	155079251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155077685
64067	chr15	+	1549	1	Intergenic	novelGene_3323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTTCACCCCAAACCACA	NA	False	NA	NA	False	NA	NA	NA	79592599	79594148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_79592600_79594100
64069	chr10	+	1849	1	Intergenic	novelGene_3408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAACCACAAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	21940034	21941883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_21940000_21941900
64070	chr5	-	2137	1	Intergenic	novelGene_851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTAATCTCAGCACTTGG	9319	False	NA	NA	False	NA	NA	NA	124469038	124466901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_124466900_124469000
64071	chr10	+	3213	18	ISM	ENSMUSG00000019986.18	ENSMUST00000105525.12	4851	24	106	62103	28	-52142	5prime_fragment	FALSE	canonical	3	12	junction_5	6.24859845877153	16	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGGTGATTTTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	20828551	20894225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_20828652_20835510_20835980_20838963_20839134_20839571_20839792_20841415_20841609_20841824_20841921_20844886_20845073_20846747_20846901_20847922_20848056_20852895_20853020_20855278_20855509_20857222_20857330_20860203_20860323_20862868_20863000_20864442_20864584_20876404_20876605_20883650_20883678_20893811
64072	chr17	-	2459	1	Intergenic	novelGene_288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGAAGCCAACCAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	68048430	68045971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_68046000_68048400
64073	chr16	-	3250	1	Antisense	novelGene_ENSMUSG00000022701.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATGGTGTCTCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	43714292	43711042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_43711000_43714300
64074	chr1	-	2693	1	Intergenic	novelGene_356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGCTTTTGAAACCCA	NA	False	NA	NA	False	NA	NA	NA	36116073	36113380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_36113400_36116100
64075	chr10	+	1226	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020150.10	1328	3	108	-6	-9	6	multi-exon	FALSE	canonical	3	39	junction_2	32.5	111	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTCCATAATATTTTT	746	False	NA	NA	False	NA	NA	NA	90918909	90938475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_90919159_90929000_90929119_90937616
64076	chr4	-	754	4	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	912.117073382335	123	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	2	True	NA	NA	False	NA	NA	NA	41098180	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093136_41094804_41094839_41095144_41095272_41098001
64077	chr1	-	1571	11	NIC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	-1	-4	intron_retention	FALSE	canonical	3	426	junction_8	40.7165813889133	276	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGTTATTTGAGTGACT	NA	False	NA	NA	False	NA	NA	NA	91326478	91303557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91326372
64078	chr12	+	1832	1	FSM	ENSMUSG00000006360.12	ENSMUST00000196932.2	1809	1	-39	16	20	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGATCTTTGGAAGTCC	NA	False	NA	NA	False	NA	NA	NA	113115651	113117483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_113115700_113117500
64079	chr9	+	767	5	NNC	ENSMUSG00000032383.8	novel	892	5	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1005.05086935936	11	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATAGCTTGGGTGTGGG	1576	False	NA	NA	False	NA	NA	NA	65967514	65973899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65967683_65968748_65968863_65970270_65970365_65972885_65972954_65973576
64080	chr5	+	2263	1	NIC	ENSMUSG00000037210.17	novel	5536	21	NA	NA	17922	-143	mono-exon	FALSE	NA	NA	NA	NA	NA	50	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACTCACACCATCAAGTC	NA	False	NA	NA	False	NA	NA	NA	34641394	34643657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34641400_34643700
64081	chr5	-	1964	15	NNC	ENSMUSG00000005103.13	novel	3089	15	NA	NA	30	21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	363.540364937342	1	69	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGGGAGGGCCTACGAGT	NA	False	NA	NA	False	NA	NA	NA	38718948	38685042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690857_38690915_38692526_38692682_38694479_38694570_38697355_38697590_38697846_38697922_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
64082	chr9	-	2503	3	NNC	ENSMUSG00000041268.18	novel	4039	11	NA	NA	3275	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	13.5	21	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGAGAAACTTTAATCCC	NA	False	NA	NA	False	NA	NA	NA	54285902	54272457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_54273912_54274837_54275834_54285849
64083	chr11	-	1191	1	NIC	ENSMUSG00000007646.14	novel	3944	9	NA	NA	9	-23923	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTGCTAAATAACTAAATAA	NA	False	NA	NA	False	NA	NA	NA	87295323	87294132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_87294100_87295300
64084	chr4	-	1120	8	NNC	ENSMUSG00000028416.14	novel	1348	7	NA	NA	-11	-16	at_least_one_novel_splicesite	FALSE	canonical	3	161	junction_7	669.499477983671	375	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGACTTGTGTTTTCTCAT	4	True	NA	NA	False	NA	NA	NA	40948305	40936416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721_40948051_40948271
64086	chr5	+	422	1	ISM	ENSMUSG00000029089.9	ENSMUST00000199818.2	587	4	17202	7	17202	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTCAATTTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	48571207	48571629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_48571200_48571600
64087	chr12	-	1882	1	ISM	ENSMUSG00000021097.16	ENSMUST00000109936.3	11866	13	93624	6454	9419	1909	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCCCAAAGCTCCAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104737711	104735829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_104735800_104737700
64088	chr8	-	664	1	FSM	ENSMUSG00002076814.1	ENSMUST00020183581.1	143	1	-308	-213	-308	213	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACACGAAGACTGGGCCGG	7171	False	NA	NA	False	NA	NA	NA	84656767	84656103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84656100_84656800
64089	chr3	+	1443	6	FSM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	37	2739	0	-7	multi-exon	FALSE	canonical	3	936	junction_4	66.9489357645064	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGTGACTGTTGGCTGCC	4032	False	NA	NA	False	NA	NA	NA	88232366	88235881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88232509_88232983_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
64090	chr5	+	2203	17	FSM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	12	7	12	-7	multi-exon	FALSE	canonical	3	53	junction_4	16.2498798072478	199	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGCTGTGCTTTGTG	7089	False	NA	NA	False	NA	NA	NA	137786071	137820876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
64091	chr9	+	1549	5	FSM	ENSMUSG00000041837.5	ENSMUST00000048184.4	2419	5	870	0	320	0	multi-exon	FALSE	canonical	3	267	junction_1	28.3846349280733	81	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGCCCCTGATTTATT	NA	False	NA	NA	False	NA	NA	NA	65254255	65266925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65254291_65261891_65262031_65263526_65263764_65263999_65264088_65265875
64094	chr10	-	843	1	Intergenic	novelGene_3501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAATCAGGAGGCAGAGGC	NA	False	NA	NA	False	NA	NA	NA	84383199	84382356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_84382400_84383200
64095	chr5	-	2190	10	ISM	ENSMUSG00000056413.17	ENSMUST00000110865.2	2557	11	17768	7	-45	-7	3prime_fragment	FALSE	canonical	3	180	junction_5	22.5344729056573	106	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTGTCCCTTCTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	139293609	139257637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_139258832_139259089_139259319_139259489_139259562_139260201_139260265_139260483_139260568_139265263_139265411_139266459_139266573_139278890_139278974_139288058_139288151_139293496
64096	chr7	+	3439	1	Intergenic	novelGene_2908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGGAAAGATGGCTGACA	NA	False	NA	NA	False	NA	NA	NA	28292621	28296060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_28292600_28296100
64097	chr3	+	855	8	NNC	ENSMUSG00000027804.14	novel	3777	9	NA	NA	26	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	924.230910276325	2	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACAGTGAATCTCATTTT	NA	False	NA	NA	False	NA	NA	NA	79498697	79510578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498865_79500916_79500955_79506191_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
64098	chr19	+	919	5	Antisense	novelGene_ENSMUSG00000024797.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGACGCGCCCTCTGCC	436	False	NA	NA	False	NA	NA	NA	6116157	6117880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_6116444_6116527_6116723_6116993_6117050_6117149_6117349_6117697
64100	chr19	-	1795	2	Intergenic	novelGene_1255	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	21	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTTCTTTTCTAATTT	NA	False	NA	NA	False	NA	NA	NA	38378508	38370944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_38372622_38378390
64101	chr13	+	526	5	ISM	ENSMUSG00000109561.2	ENSMUST00000208758.2	5859	25	138	129656	-122	-41038	internal_fragment	FALSE	canonical	2	8	junction_3	2.1650635094611	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAAGCTTTCATGAACAT	NA	False	NA	NA	False	NA	NA	NA	96884917	96916891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_96885144_96888491_96888566_96889478_96889589_96910844_96910886_96916816
64102	chr7	+	1938	5	NIC	ENSMUSG00000030611.11	novel	1056	6	NA	NA	-11	0	intron_retention	FALSE	canonical	3	364	junction_2	43.5280082245903	6	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	78433091	78442737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78441688_78442389
64103	chr15	+	987	2	FSM	ENSMUSG00000116160.2	ENSMUST00000229356.2	632	2	-34	-321	-34	321	multi-exon	FALSE	canonical	3	8	junction_1	0	18	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTTACAATTTTACTCAC	NA	False	NA	NA	False	NA	NA	NA	96395748	96397090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_96395869_96396223
64106	chrM	+	385	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	302	-3	302	3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	276	False	NA	NA	False	NA	NA	NA	7314	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7300_7700
64107	chr5	+	3017	6	NNC	ENSMUSG00000029307.8	novel	2764	6	NA	NA	-5059	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	29	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGGAATTGTGTGCTTA	NA	False	NA	NA	False	NA	NA	NA	104345419	104361966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104345775_104354941_104355017_104355455_104355504_104357763_104357797_104357967_104358013_104359505
64108	chr7	-	827	5	NNC	ENSMUSG00000030615.13	novel	799	5	NA	NA	11	5	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	324.184650315218	861	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTGTCTGCAACATTAA	1677	False	NA	NA	False	NA	NA	NA	90106405	90099914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_90100144_90100750_90100866_90101914_90102176_90104631_90104728_90106279
64109	chr13	+	1579	7	NNC	ENSMUSG00000113816.2	novel	1481	2	NA	NA	61	14527	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	114	31	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGGGCAGCTCCGCTACG	6180	False	NA	NA	False	NA	NA	NA	64438951	64460380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_64440038_64444936_64444994_64445068_64445204_64456638_64456744_64456907_64456960_64460079_64460150_64460306
64112	chr10	+	2315	10	NNC	ENSMUSG00000035697.15	novel	2980	15	NA	NA	4427	-11	intron_retention	FALSE	non_canonical	0	0	junction_8	27.4307208152546	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTTAACCAACTGCCAC	317	False	NA	NA	False	NA	NA	NA	79862003	79867285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79862181_79862266_79862392_79862490_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865014_79866122_79866211_79866565
64113	chr17	+	1609	5	NIC	ENSMUSG00000040482.17	novel	1519	7	NA	NA	30	-10	intron_retention	FALSE	canonical	3	152	junction_1	16.3458710382775	2	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGTGGGTCTCTTGCTG	3069	False	NA	NA	False	NA	NA	NA	35056087	35058152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35056731_35056876_35057422_35057523_35057660_35057788_35057884_35057962
64114	chr16	-	859	4	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-9918	474	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	515.095676118093	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTGACTTGCACAATTC	NA	False	NA	NA	False	NA	NA	NA	22230497	22201854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22202442_22205506_22205561_22220578_22220682_22230382
64115	chr6	-	1512	8	ISM	ENSMUSG00000051169.15	ENSMUST00000113092.9	1269	9	15	10	-2	0	intron_retention	FALSE	canonical	3	151	junction_2	16.0687299321587	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGCAGATGTTTACC	NA	False	NA	NA	False	NA	NA	NA	113396286	113392289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770
64116	chrX	+	1382	2	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-1793	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	53	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74147761	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74148873_74153112
64118	chr3	-	841	1	Antisense	novelGene_ENSMUSG00000042747.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTCCAGATTATTGAAGG	4945	False	NA	NA	False	NA	NA	NA	89155233	89154392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89154400_89155200
64119	chr11	-	1168	9	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	31	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	444.050391284593	1	59	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTGAGTGCAGATCTT	NA	False	NA	NA	False	NA	NA	NA	119190884	119179191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119184339_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
64120	chr1	-	1246	12	NNC	ENSMUSG00000014602.16	novel	5391	47	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3.09892009982897	4	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAACAAGCTGATTAGA	NA	False	NA	NA	False	NA	NA	NA	93029579	92993858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_92993912_92994777_92994857_92996206_92996303_93000760_93000827_93001529_93001608_93002677_93002790_93003872_93004052_93004763_93004830_93005409_93005590_93006482_93006560_93010037_93010203_93029484
64122	ERCC-00116	+	1960	1	FSM	ERCC-00116A	DQ668367	1977	1	15	2	15	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	26	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TC	NA	False	NA	NA	False	NA	NA	NA	15	1975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00116_+_0_2000
64123	chr9	+	1337	11	NIC	ENSMUSG00000023345.18	novel	2337	11	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	88.6248272212702	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCACATCTTACCCAG	9885	False	NA	NA	False	NA	NA	NA	106158587	106227076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207099_106207216_106226880
64124	chr8	-	809	1	NIC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	2029	-9032	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGACATATGATTTATTT	NA	False	NA	NA	False	NA	NA	NA	43757944	43757135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_43757100_43757900
64126	chr2	-	1190	2	Intergenic	novelGene_2797	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGTCAGCTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	168807969	168802174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_168803291_168807895
64127	chr18	-	1921	15	NNC	ENSMUSG00000044719.6	novel	2016	13	NA	NA	-147	-271	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2.17124059336724	13	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCTCTCCTGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	36829125	36818246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_36818622_36818699_36818859_36819741_36819907_36820298_36820370_36821210_36821269_36821937_36822016_36822086_36822296_36824493_36824628_36825266_36825366_36825451_36825539_36826090_36826174_36827736_36827815_36828592_36828713_36828850_36828899_36828968
64129	chr3	-	2173	9	ISM	ENSMUSG00000038170.16	ENSMUST00000168438.9	8264	46	188791	6	-2649	0	3prime_fragment	FALSE	canonical	1	2	junction_2	2.82566363886433	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATTATTTTCCTTTGC	2957	False	NA	NA	False	NA	NA	NA	97607232	97597145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_97598170_97599636_97599684_97599911_97600051_97601251_97601396_97602207_97602435_97603194_97603315_97604305_97604531_97606424_97606550_97607110
64131	chr19	-	768	2	ISM	ENSMUSG00000050623.6	ENSMUST00000235924.2	915	4	-1	912	-1	-912	5prime_fragment	FALSE	canonical	3	44	junction_1	0	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTCTTGTTGCTTTT	7417	False	NA	NA	False	NA	NA	NA	6902721	6900759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6900968_6902161
64132	chr17	+	1686	5	NIC	ENSMUSG00000060586.12	novel	1171	6	NA	NA	33	1	intron_retention	FALSE	canonical	3	177	junction_2	8.63133825081603	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	34524940	34535174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34525022_34528564_34528835_34533143_34534128_34534529_34534554_34534847
64133	chr1	-	2657	7	ISM	ENSMUSG00000070565.12	ENSMUST00000078308.13	10047	18	251283	4713	20129	639	3prime_fragment	FALSE	canonical	0	0	junction_6	2.7938424357067	9	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTTGTCCACTGCCCTT	8270	False	NA	NA	False	NA	NA	NA	156988882	156967464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_156968446_156973759_156973848_156975199_156975403_156977342_156977478_156984475_156985338_156986228_156986429_156988694
64135	chr11	-	2210	2	FSM	ENSMUSG00000045140.9	ENSMUST00000108080.3	1728	2	18	-500	18	-28	multi-exon	FALSE	canonical	3	12	junction_1	0	33	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATTATTTAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	84771093	84767168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84769339_84771053
64136	chr14	+	740	5	NNC	ENSMUSG00000060126.15	novel	996	5	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2408.11035876681	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCATTTAAATCCACTTA	1076	False	NA	NA	False	NA	NA	NA	76082770	76085722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082929_76083658_76083834_76084133_76084240_76084683_76084801_76085538
64137	chr2	+	2609	5	Intergenic	novelGene_2757	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_2	0.707106781186548	20	11	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTTTATTTTATGTAT	NA	False	NA	NA	False	NA	NA	NA	157518251	157524537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_157518583_157519235_157519341_157519443_157519576_157521901_157522001_157522595
64138	chr16	+	1165	1	Antisense	novelGene_ENSMUSG00000041079.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAATTCCAGGATAGCT	NA	False	NA	NA	False	NA	NA	NA	87237260	87238425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_87237300_87238400
64140	chr5	+	1877	5	Antisense	novelGene_ENSMUSG00000041132.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGTTGTTTTTGTGAC	NA	False	NA	NA	False	NA	NA	NA	150495107	150517959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_150496462_150497466_150497541_150499713_150499806_150500106_150500233_150517728
64141	chr8	+	2488	6	ISM	ENSMUSG00000041515.11	ENSMUST00000162001.8	2270	9	6924	-1108	83	-5	3prime_fragment	FALSE	canonical	3	35	junction_1	4.84148737476408	56	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGTAATGTTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	121472301	121483428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
64143	chr15	-	1132	3	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	-7	136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1632.5	4	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATATGGCAGCTGTGCC	4962	False	NA	NA	False	NA	NA	NA	81931743	81925542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81926570_81928097_81928167_81931707
64145	chr5	-	1973	6	NNC	ENSMUSG00000039244.11	novel	2208	6	NA	NA	31	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	57.1930065654884	76	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAGGCATTGTGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	143300855	143286964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300629
64146	chr1	+	4031	13	FSM	ENSMUSG00000034066.14	ENSMUST00000122402.3	2816	13	0	-1215	0	1215	multi-exon	FALSE	canonical	1	2	junction_10	3.685557397916	4	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTTCTTTTGGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	93439833	93510233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93439907_93456290_93456502_93487957_93488063_93488865_93488909_93491030_93491110_93495138_93495237_93496802_93496918_93497594_93497743_93502092_93502189_93504091_93504256_93504544_93504614_93505369_93505428_93507461
64147	chr8	+	600	2	Genic_Genomic	ENSMUSG00000061104.6	novel	789	1	NA	NA	8	-78	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCTTATGTAAAATATGAA	NA	False	NA	NA	False	NA	NA	NA	96551981	96552684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_96552208_96552310
64148	chr16	-	1338	1	NIC	ENSMUSG00000022768.18	novel	2359	5	NA	NA	3783	-213	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGAATACAACCACTGTA	NA	False	NA	NA	False	NA	NA	NA	16958478	16957140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16957100_16958500
64149	chr10	-	715	3	NNC	ENSMUSG00000037710.9	novel	1084	3	NA	NA	97	-242	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	885	94	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACATGTACATTGTACTT	1350	False	NA	NA	False	NA	NA	NA	71180687	71166551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_71166957_71172073_71172250_71180553
64150	chr2	-	505	3	ISM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	1412	0	546	0	3prime_fragment	FALSE	canonical	3	4118	junction_1	205	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	NA	False	NA	NA	NA	73740257	73738790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_73739052_73739527_73739722_73740207
64151	chr3	-	1200	3	ISM	ENSMUSG00000028114.17	ENSMUST00000174006.5	634	4	2191	-686	2191	-489	3prime_fragment	FALSE	canonical	3	213	junction_2	12.5	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGATGGCTCCTGACCA	NA	False	NA	NA	False	NA	NA	NA	123166289	123162434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_123163340_123164923_123165135_123166205
64152	chr5	+	1026	6	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	229.659399981799	219	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	124254138	124256259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_124254308_124254496_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
64153	chrX	+	711	2	NIC	ENSMUSG00000109493.2	novel	744	5	NA	NA	238	-2253	intron_retention	FALSE	canonical	3	181	junction_1	0	2	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGACTTGACCTCAAGG	3	True	NA	NA	False	NA	NA	NA	7593459	7594427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7593732_7593988
64154	chrX	+	1848	11	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	5	1	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	84.5389850897206	1	52	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATTTATGACTTGACCT	3787	False	NA	NA	False	NA	NA	NA	7588236	7594422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7588470_7590087_7590160_7590262_7590338_7590425_7590531_7591978_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
64155	chr7	-	1707	5	FSM	ENSMUSG00000074272.11	ENSMUST00000206981.2	1711	5	0	4	0	-4	multi-exon	FALSE	canonical	1	2	junction_2	3.49106001094224	9	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTAAAAGCGGACTTTTT	2868	False	NA	NA	False	NA	NA	NA	25177008	25170804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_25171499_25173222_25173478_25173944_25174230_25175768_25176129_25176895
64156	chr15	+	1140	11	NNC	ENSMUSG00000056851.15	novel	1463	15	NA	NA	-43	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	190.504094444188	1	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTTTTTCTTTGTGA	6043	False	NA	NA	False	NA	NA	NA	102383007	102407319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923_102407079_102407181
64157	chr4	-	2352	6	FSM	ENSMUSG00000064141.15	ENSMUST00000106280.8	2362	6	7	3	7	-3	multi-exon	FALSE	canonical	3	8	junction_2	16.2898741554378	20	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCACTGATTTACAGAT	6843	False	NA	NA	False	NA	NA	NA	120808889	120787336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_120788704_120791529_120791629_120792263_120792391_120804485_120804767_120806528_120806758_120808640
64158	chr11	-	2233	8	NNC	ENSMUSG00000042302.15	novel	4971	25	NA	NA	-244	-3379	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	2.50713268211203	2	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTTTAAGATACAAGC	9648	False	NA	NA	False	NA	NA	NA	22237039	22099910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_22101190_22119034_22119175_22122824_22123007_22182001_22182056_22189142_22189239_22197969_22198028_22235487_22235875_22237002
64159	SIRV6	+	1099	8	NNC	SIRV6A	novel	1088	9	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	8646.21279131234	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	1130	11330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1600_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_10993
64160	chr14	+	2675	18	Antisense	novelGene_ENSMUSG00000033004.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGCAACTGAGGGAAGCA	NA	False	NA	NA	False	NA	NA	NA	103393870	103441922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_103394202_103407290_103407447_103410000_103410126_103411222_103411359_103412203_103412426_103419788_103419931_103422267_103422385_103423019_103423120_103425936_103426050_103429001_103429057_103432017_103432232_103433675_103433819_103434680_103434852_103436073_103436124_103436866_103436959_103437511_103437628_103438646_103438876_103441759
64162	chr7	+	2037	15	NNC	ENSMUSG00000038563.15	novel	3610	20	NA	NA	-1	-416	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	43.9412873581769	1	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82297835	82347476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323612_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333519_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086
64164	chr11	+	1242	2	FSM	ENSMUSG00000020895.15	ENSMUST00000125215.2	311	2	-475	-456	14	-8	multi-exon	FALSE	canonical	3	408	junction_1	0	41	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTATAACAAGAGCAAGG	4668	False	NA	NA	False	NA	NA	NA	68961652	68963842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68962301_68963248
64165	chr12	+	1632	10	NNC	ENSMUSG00000044712.16	novel	3032	16	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	6.32455532033676	11	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTATGCTGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73333672	73400819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_73333807_73335166_73335298_73338933_73339008_73356918_73356972_73365750_73365791_73376753_73376833_73383795_73383879_73384283_73384325_73399737_73399908_73399992
64166	chr1	+	895	10	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	3085	junction_6	967.274955483792	632	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
64167	chr3	-	3509	1	Antisense	novelGene_ENSMUSG00000058952.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	87	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACATTGTTGATATCC	6281	False	NA	NA	False	NA	NA	NA	129672159	129668650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_129668600_129672200
64168	chrX	+	744	3	NNC	ENSMUSG00000047844.4	novel	837	3	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	canonical	3	241	junction_2	2028	2	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCTCAGTCATCTTCT	NA	False	NA	NA	False	NA	NA	NA	135039795	135041192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_135039916_135040271_135040307_135040603
64169	chr14	+	1057	7	NIC	ENSMUSG00000050335.18	novel	646	5	NA	NA	84	3	combination_of_known_junctions	TRUE	canonical	2	5	junction_1	41.1055551801294	140	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCATCGCTTTGGGGGTT	NA	False	NA	NA	False	NA	NA	NA	47605291	47623254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_47605310_47605702_47605826_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
64170	chr13	-	2536	1	Intergenic	novelGene_1480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	73	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	77238421	77235885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_77235900_77238400
64172	chr8	-	581	4	NNC	ENSMUSG00000045128.10	novel	795	4	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	14034.3382775565	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGACTGTCCTTGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	71350054	71348032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71348152_71348243_71348425_71348727_71348957_71350002
64173	chr11	+	1242	5	FSM	ENSMUSG00000032615.15	ENSMUST00000149076.8	1316	5	65	9	65	-9	multi-exon	FALSE	canonical	3	8	junction_1	25.0337272494529	57	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACATAGCCTGTGCTGT	2710	False	NA	NA	False	NA	NA	NA	59730337	59767350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_59730583_59743616_59743718_59751575_59751637_59765378_59765494_59766630
64175	chr6	-	969	1	NIC	ENSMUSG00000086429.10	novel	551	3	NA	NA	5791	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	173	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATGTCCTAAATAGTCAAA	NA	False	NA	NA	False	NA	NA	NA	113048347	113047378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113047400_113048300
64176	chr19	+	1871	5	NNC	ENSMUSG00000024909.16	novel	406	4	NA	NA	-1373	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	34.4564943080401	3	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGAAGGAGTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	5528699	5531869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5529847_5530057_5530178_5530261_5530389_5530573_5530770_5531588
64177	chr17	-	955	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	-27	-2	-11	0	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	2151	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	26314474	26310707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
64178	chr9	+	553	5	NNC	ENSMUSG00000000088.8	novel	645	5	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3847.76476509414	21	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTGTGATGTTGTC	380	False	NA	NA	False	NA	NA	NA	57428564	57439710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57428699_57436238_57436356_57437523_57437646_57439041_57439076_57439564
64179	chr1	+	1496	11	NNC	ENSMUSG00000026275.14	novel	10315	10	NA	NA	-4	-7966	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	260.053532950429	2	65	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGGCCCAATGTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	93271372	93293245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278740_93279232_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611_93292708_93292761
64180	chr17	-	1462	1	Genic_Genomic	ENSMUSG00000089755.2	novel	NA	NA	NA	NA	-29	-791	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAAGACCCCACTCCTTT	NA	False	NA	NA	False	NA	NA	NA	87671919	87670457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_87670500_87671900
64183	chr5	-	969	1	ISM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	9897	11	596	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGAGTAACTTTTGACT	NA	False	NA	NA	False	NA	NA	NA	116152624	116151655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_116151700_116152600
64184	chr6	+	1426	7	FSM	ENSMUSG00000047115.16	ENSMUST00000060561.15	2730	7	42	1262	42	-3	multi-exon	FALSE	canonical	3	30	junction_5	5.75663867972351	128	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACATAGGGTCAGATTT	NA	False	NA	NA	False	NA	NA	NA	49344714	49366211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49362306_49362390_49365750
64186	chr17	-	834	4	FSM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	1	10	1	-10	multi-exon	FALSE	canonical	3	145	junction_3	117.235754879739	1980	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTGACCGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	30845878	30841424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755
64187	chr7	-	971	5	NNC	ENSMUSG00000030595.16	novel	1243	6	NA	NA	98	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	248.107209689682	7	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCCCAGACTGACCCT	NA	False	NA	NA	False	NA	NA	NA	28465841	28458472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28458630_28459251_28459498_28461071_28461361_28461450_28461557_28465668
64188	chr8	-	1449	4	ISM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	-1	5099	-1	1037	5prime_fragment	FALSE	canonical	3	204	junction_3	44.5745318414999	5	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGGAGCCGCACAGCTC	NA	False	NA	NA	False	NA	NA	NA	14140302	14082659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_14083765_14114204_14114340_14128769_14128917_14140240
64189	chr11	+	458	4	NNC	ENSMUSG00000017404.13	novel	737	6	NA	NA	908	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7693.93943308628	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97918690	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97918756_97919171_97919295_97920220_97920328_97921140
64190	chr1	+	2472	7	ISM	ENSMUSG00000026348.8	ENSMUST00000038006.8	2717	10	16344	-8	-11000	8	3prime_fragment	FALSE	canonical	0	0	junction_4	1.10554159678513	12	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGTTACTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	127673493	127695723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_127673563_127676725_127676963_127681524_127681619_127685740_127685837_127687395_127687569_127693616_127693716_127694019
64192	chr8	+	928	6	NIC	ENSMUSG00000031533.5	novel	1515	7	NA	NA	71	-191	combination_of_known_splicesites	FALSE	canonical	3	49	junction_1	284.186136185423	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCCTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	22901484	22919490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_22901601_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
64193	chr7	-	2021	13	NNC	ENSMUSG00000058886.10	novel	2121	13	NA	NA	-485	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	40.4298947424908	101	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCCCATACCTGAATGTT	NA	False	NA	NA	False	NA	NA	NA	140908088	140877104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140877530_140881512_140881603_140890674_140890923_140893132_140893262_140894246_140894376_140894774_140894902_140901022_140901089_140901838_140901979_140902374_140902522_140902802_140902933_140903994_140904093_140904354_140904530_140907971
64194	chr1	-	878	6	NIC	ENSMUSG00000026189.14	novel	1120	8	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	98.9432160382914	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAACCGGTTATCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	72323418	72298335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72316445_72316580_72323251
64195	chr15	-	904	9	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	285.365965691426	866	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTGTGGAATAGTGAC	NA	False	NA	NA	False	NA	NA	NA	93296188	93283990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93291587_93291646_93293467_93293497_93295050_93295137_93296043
64198	chr17	-	433	1	Intergenic	novelGene_285	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTCCTCTCTTCACGT	NA	False	NA	NA	False	NA	NA	NA	66791042	66790609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66790600_66791000
64199	chr19	-	2715	1	Intergenic	novelGene_1293	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCAGTTCCTAGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	57324794	57322079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_57322100_57324800
64200	chr13	+	2636	17	NIC	ENSMUSG00000021669.16	novel	3040	18	NA	NA	2	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	16.0544727023344	14	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGACTGTTTGAATTTGAC	NA	False	NA	NA	False	NA	NA	NA	96679127	96774526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_96679153_96685704_96685840_96708418_96708536_96734712_96734821_96735897_96736037_96739580_96739665_96746281_96746440_96748768_96748862_96751281_96751369_96752964_96753058_96761202_96761299_96765520_96765654_96767268_96767340_96770580_96770710_96771361_96771492_96772257_96772395_96773625
64202	chr10	+	1050	1	NIC	ENSMUSG00000040345.11	novel	1946	16	NA	NA	4568	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAACATACATAGACTAA	1216	False	NA	NA	False	NA	NA	NA	127164759	127165809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127164800_127165800
64203	chr2	+	328	3	ISM	ENSMUSG00000038900.18	ENSMUST00000125415.3	600	4	-55	639	-35	-266	5prime_fragment	FALSE	canonical	3	5241	junction_1	402	29	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTACATTGCTTGCTGT	5767	False	NA	NA	False	NA	NA	NA	32851696	32852684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32851852_32852060_32852135_32852585
64205	chr4	-	969	3	NNC	ENSMUSG00000040928.16	novel	2241	5	NA	NA	18	-23	intron_retention	FALSE	non_canonical	0	0	junction_2	78.5	1	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTCCAGTTCATCAAAC	1250	False	NA	NA	False	NA	NA	NA	129083273	129075557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129076326_129077393_129077511_129083189
64206	chr17	-	667	4	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_2	14.6590889515307	113	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATATGCTTGAGCCATC	NA	False	NA	NA	False	NA	NA	NA	88932920	88923869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_88924018_88928723_88928829_88930105_88930383_88932783
64207	chr17	-	326	1	Intergenic	novelGene_319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	88922908	88922582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_88922600_88922900
64208	chr7	-	1899	2	Genic_Genomic	ENSMUSG00000060314.14	novel	2791	4	NA	NA	9	-6828	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGACAAGGGCTCACTGT	NA	False	NA	NA	False	NA	NA	NA	140402082	140399985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_140400873_140401070
64209	chr11	-	803	3	FSM	ENSMUSG00000093989.2	ENSMUST00000125752.3	779	3	-28	4	-28	-1	multi-exon	FALSE	canonical	1	8	junction_2	359	35	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAAGCTTGCTGTCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	70130634	70128953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70129297_70129763_70129841_70130251
64210	chr7	+	2068	1	ISM	ENSMUSG00000059273.10	ENSMUST00000098789.5	6039	14	33475	946	19837	-946	mono-exon	FALSE	NA	NA	NA	NA	NA	27	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAGGCTGCCTCTTTTAT	8404	False	NA	NA	False	NA	NA	NA	16168606	16170674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_16168600_16170700
64211	chr2	+	2529	1	NIC	ENSMUSG00000026848.15	novel	3039	5	NA	NA	-40	-834	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATCTGCTTTGTGGGGG	NA	False	NA	NA	False	NA	NA	NA	30843143	30845672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30843100_30845700
64213	chr6	+	929	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	51	2	51	-2	multi-exon	FALSE	canonical	3	124	junction_1	0	685	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTGTCCTGTTGACA	2	True	NA	NA	False	NA	NA	NA	29272675	29275443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_29272810_29274648
64214	chr17	+	1907	3	NIC	ENSMUSG00000059791.15	novel	1466	4	NA	NA	13	-2	intron_retention	FALSE	canonical	3	236	junction_1	15.5	713	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCACTTGTCTGTCCATG	4622	False	NA	NA	False	NA	NA	NA	36172242	36176292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36172410_36174330_36175181_36175402
64215	chr13	-	912	6	NIC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	34	-2	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	81.0668859646157	20	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATAGTGCTTTGTACAG	NA	False	NA	NA	False	NA	NA	NA	49806209	49617500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49803596_49803776_49806058
64216	chr8	+	1077	1	ISM	ENSMUSG00000038872.11	ENSMUST00000220518.2	17152	16	1015276	2634	243276	-2634	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCGAGTGCAGCCAACAAAA	NA	False	NA	NA	False	NA	NA	NA	109684551	109685628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_109684600_109685600
64217	chrX	+	495	4	NNC	ENSMUSG00000008682.14	novel	600	5	NA	NA	-84	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4565.44370485742	2	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCGCTTATGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	73315264	73316731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73315272_73315809_73315924_73316277_73316441_73316520
64218	chr2	+	3342	2	NNC	ENSMUSG00000019188.17	novel	798	2	NA	NA	-1090	165	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	3	82	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATTGAATGGAAAACTC	NA	False	NA	NA	False	NA	NA	NA	152532668	152538326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152535609_152537924
64219	chr8	+	592	5	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	32	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8702.69670849214	7	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAAAGCTGGGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	123829120	123831976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_123829185_123829391_123829502_123829928_123830096_123830636_123830694_123831782
64220	chr14	-	1020	3	NIC	ENSMUSG00000002320.16	novel	840	4	NA	NA	10	-343	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	180	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAAAAAGTTCAGTG	5305	False	NA	NA	False	NA	NA	NA	55880698	55878243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55879046_55880050_55880207_55880636
64221	chr17	-	517	2	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	1299	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAATAAAGAAGATGCAG	NA	False	NA	NA	False	NA	NA	NA	45879363	45878728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879046_45879163
64222	chr2	+	2624	2	ISM	ENSMUSG00000026657.18	ENSMUST00000176828.8	4355	12	39050	10396	32630	4199	internal_fragment	FALSE	canonical	3	56	junction_1	0	2	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGAAGCCTCCCACATTGG	6338	False	NA	NA	False	NA	NA	NA	4603616	4606999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_4606167_4606925
64223	chr7	-	2441	5	FSM	ENSMUSG00000070424.13	ENSMUST00000106937.8	1713	5	-735	7	-735	-7	multi-exon	FALSE	canonical	1	2	junction_3	2.12132034355964	26	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGAGACATGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	101750171	101746093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_101746428_101746514_101746548_101746987_101747718_101748640_101748851_101749037
64226	chr2	-	340	1	Intergenic	novelGene_2710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATTCTACACAATCTCCT	NA	False	NA	NA	False	NA	NA	NA	131638625	131638285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_131638300_131638600
64227	chr7	-	1019	4	NIC	ENSMUSG00000003380.12	novel	899	5	NA	NA	-5	-2	intron_retention	FALSE	canonical	3	706	junction_2	26.4701089281224	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATTTGGCCAATACTTT	4	True	NA	NA	False	NA	NA	NA	24672068	24669188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_24669435_24669511_24669614_24671185_24671740_24671951
64228	chr1	+	914	8	NIC	ENSMUSG00000053332.14	novel	793	11	NA	NA	-35	0	intron_retention	FALSE	canonical	3	1206	junction_3	1734.13238908024	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160863554	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
64229	chr2	+	1906	9	FSM	ENSMUSG00000015085.9	ENSMUST00000028328.3	1935	9	21	8	21	-8	multi-exon	FALSE	canonical	1	2	junction_1	1.69096865730859	31	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGAGCAGTGAAGTGTCCA	NA	False	NA	NA	False	NA	NA	NA	25285906	25291325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25286102_25287407_25287526_25288012_25288164_25288302_25288463_25288543_25288772_25289293_25289549_25289628_25289749_25290575_25290711_25290781
64230	chr13	-	2139	3	Intergenic	novelGene_1520	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1	11	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCCGAATCGTGGTCTCG	NA	False	NA	NA	False	NA	NA	NA	99127156	99122859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_99124234_99125221_99125729_99126898
64231	chr11	-	1542	7	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	-6	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	558.345696380537	2393	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAATAACTAAAAGTAGCA	NA	False	NA	NA	False	NA	NA	NA	17161574	17153211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159144_17159310_17159395_17160987_17161138_17161312
64233	chrX	-	2914	13	NNC	ENSMUSG00000031111.17	novel	4421	20	NA	NA	760	1843	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2.21108319357027	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGGATGAAACCATGGAA	NA	False	NA	NA	False	NA	NA	NA	48883481	48873380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_48873671_48873848_48874137_48874864_48875153_48875735_48876015_48876234_48876526_48876909_48876943_48877024_48877096_48878964_48879080_48879391_48879671_48880163_48880458_48880691_48880977_48882780_48883069_48883368
64234	chr5	-	1011	6	ISM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	8341	4	65	-4	3prime_fragment	FALSE	canonical	3	674	junction_1	180.962537559573	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGATTCAGTAGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	129856172	129842625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085
64236	chr7	-	942	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	7	0	7	0	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	279	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6942	False	NA	NA	False	NA	NA	NA	12768727	12765940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
64237	chr14	-	533	5	NIC	ENSMUSG00000022013.5	novel	6193	6	NA	NA	14	-35	combination_of_known_splicesites	FALSE	canonical	3	7	junction_2	256.190724851623	170	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGCCTTGGTCTGGCAGG	NA	False	NA	NA	False	NA	NA	NA	78112352	78063689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_78063911_78077607_78077679_78090337_78090412_78094378_78094431_78112237
64239	chr2	+	1468	1	Antisense	novelGene_ENSMUSG00000082795.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAGCCCTGACCAACCTG	4839	False	NA	NA	False	NA	NA	NA	4959514	4960982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4959500_4961000
64240	chr2	+	996	3	ISM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	30	1826	14	550	5prime_fragment	FALSE	canonical	3	90	junction_2	234	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAGTACTTGCAAATCTT	NA	False	NA	NA	False	NA	NA	NA	30697982	30711203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_30698096_30709640_30709781_30710460
64241	chr2	+	1108	8	NNC	ENSMUSG00000000827.19	novel	3603	8	NA	NA	-1	-363	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	403.176114857808	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTATGATACAATGTAG	NA	False	NA	NA	False	NA	NA	NA	181139020	181157686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872_181157167_181157465
64242	chr15	+	1891	3	Intergenic	novelGene_3284	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	3.5	56	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATCTAGGATCACCATGG	NA	False	NA	NA	False	NA	NA	NA	41214471	41224498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_41214592_41222277_41222360_41222809
64244	chr2	+	1215	7	ISM	ENSMUSG00000070880.11	ENSMUST00000130604.8	1197	9	83	2409	-38	127	5prime_fragment	FALSE	canonical	1	2	junction_6	3.80423740350444	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGCCATAGTTATCTT	NA	False	NA	NA	False	NA	NA	NA	70392468	70415071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_70392677_70394111_70394255_70397529_70397593_70403049_70403209_70404412_70404656_70409454_70409546_70414763
64245	chr14	+	1471	6	FSM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	70	8	46	-4	multi-exon	FALSE	canonical	3	443	junction_3	21.4532048887806	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATAAAATGGCTGTCTCTG	462	False	NA	NA	False	NA	NA	NA	25694663	25700884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
64246	chr14	+	1475	14	FSM	ENSMUSG00000004561.15	ENSMUST00000047899.13	1623	14	88	60	-5	15	multi-exon	FALSE	canonical	0	0	junction_8	48.1261901412816	1	56	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTACCCTGTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	52122386	52129265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
64247	chr5	+	912	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6934.63361396981	3	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121342596	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121342616_121343468_121343733_121343825_121343919_121344729_121344896_121346453_121346639_121346844
64249	chr13	+	1034	8	NNC	ENSMUSG00000021714.16	novel	1306	10	NA	NA	-9	-1811	intron_retention	FALSE	non_canonical	0	0	junction_7	158.946275097427	3	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAGAGGTAAGTGTAGA	NA	False	NA	NA	False	NA	NA	NA	104365453	104381830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104379381_104381782
64251	chr6	-	713	1	NIC	ENSMUSG00000032641.19	novel	1643	4	NA	NA	-129	197	mono-exon	FALSE	NA	NA	NA	NA	NA	24	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGTCTCTTATCTCAAC	NA	False	NA	NA	False	NA	NA	NA	134874176	134873463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134873500_134874200
64254	chr16	-	1108	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	0	0	0	0	multi-exon	FALSE	canonical	2	125	junction_1	37.5	351	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTGCATGAGATGTG	NA	False	NA	NA	False	NA	NA	NA	16950247	16948001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16948653_16949460_16949658_16949987
64255	chr3	-	2290	1	ISM	ENSMUSG00000027864.10	ENSMUST00000102694.4	5902	9	67756	1	30927	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	236	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGACTTGTGTGAGGAAGT	NA	False	NA	NA	False	NA	NA	NA	100949838	100947548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_100947500_100949800
64256	chr10	+	494	5	NNC	ENSMUSG00000061315.15	novel	885	8	NA	NA	11105	-37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4786.67010431051	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATCACTAATAAAGTTGTG	3290	False	NA	NA	False	NA	NA	NA	127882608	127884465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127882676_127883526_127883656_127883925_127883997_127884113_127884237_127884361
64257	chr7	-	628	1	ISM	ENSMUSG00000078817.5	ENSMUST00000108653.4	6928	10	27016	3142	27016	-3142	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAAATCTTTAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	3271227	3270599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_3270600_3271200
64260	chr11	+	1082	11	ISM	ENSMUSG00000020333.18	ENSMUST00000093106.12	5804	21	41	27764	41	-736	5prime_fragment	FALSE	canonical	3	16	junction_10	11.6807534003591	1	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTGAGAGAGTGATCCA	NA	False	NA	NA	False	NA	NA	NA	54194664	54227818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761
64261	chr4	+	1552	15	FSM	ENSMUSG00000012126.17	ENSMUST00000074690.11	1573	15	20	1	0	0	multi-exon	TRUE	canonical	3	35	junction_2	24.8785827078437	265	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGCTTCACAAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	133829913	133854086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
64263	chr9	+	1106	1	Antisense	novelGene_ENSMUSG00000094627.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGAGCACGGAATACAGCG	5843	False	NA	NA	False	NA	NA	NA	22231589	22232695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_22231600_22232700
64264	chr15	-	1139	3	NNC	ENSMUSG00000037525.6	novel	1276	2	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	42	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGTCGTTTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	99372584	99367959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99368961_99372336_99372419_99372528
64265	chr3	+	1218	8	NNC	ENSMUSG00000091512.6	novel	733	7	NA	NA	-9	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	128.693117016206	1	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGTACCGAATGAGCTC	51	False	NA	NA	False	NA	NA	NA	137624257	137634515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137624389_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707_137634211_137634269
64268	chr10	-	1849	2	NNC	ENSMUSG00000051236.14	novel	3843	7	NA	NA	67375	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	60	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAAAGTGACAAGAAACC	9163	False	NA	NA	False	NA	NA	NA	120618998	120617092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_120617715_120617771
64269	chr16	+	1222	5	Antisense	novelGene_ENSMUSG00000022760.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	323	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGCCCCCAAGGGGCGGG	9296	False	NA	NA	False	NA	NA	NA	17345845	17348974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_17346605_17346798_17346942_17348095_17348250_17348641_17348722_17348888
64270	chr1	-	1277	2	FSM	ENSMUSG00000025930.7	ENSMUST00000027062.7	1741	2	455	9	-182	-9	multi-exon	FALSE	canonical	3	23	junction_1	0	79	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGACAAAACATGCATTGTA	NA	False	NA	NA	False	NA	NA	NA	14825759	14823578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_14824550_14825453
64272	chr7	+	580	7	NNC	ENSMUSG00000059070.17	novel	2989	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3043.96656884109	7	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5953	False	NA	NA	False	NA	NA	NA	45367525	45370255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369779_45369842_45369912_45370137
64273	chr11	-	1652	4	NNC	ENSMUSG00000001053.16	novel	846	4	NA	NA	-26	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	168.263681959794	8	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTTATGTGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	51541695	51533907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51534610_51536101_51536513_51536753_51537102_51541504
64276	chr2	-	732	1	Antisense	novelGene_ENSMUSG00000083317.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTGTGTATAGAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	176728426	176727694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_176727700_176728400
64278	chr7	-	972	6	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	8440	-3	-46	-3	3prime_fragment	FALSE	canonical	3	430	junction_4	31.3496411462715	554	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCATCCCGTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	30136474	30134409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211
64279	chr17	-	938	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	-1	11	-1	-11	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGAAGTCAGCGGGGGC	3467	False	NA	NA	False	NA	NA	NA	5490519	5461155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
64280	chr13	+	1226	12	NNC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-24	-849	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	182.740388493559	1	45	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGTAGACCTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	107083610	107095419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086093_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
64281	chr17	-	1606	4	NIC	ENSMUSG00000050410.16	novel	1665	4	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	19.7989898732233	268	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9344	False	NA	NA	False	NA	NA	NA	35827710	35823630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35824082_35825370_35825918_35826774_35827328_35827655
64282	chr8	+	1703	1	ISM	ENSMUSG00000031709.16	ENSMUST00000093393.5	5334	21	105357	15	11958	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	24	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTTCAGATATGGCTCG	212	False	NA	NA	False	NA	NA	NA	83997845	83999548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_83997800_83999500
64283	chr1	-	775	1	Antisense	novelGene_ENSMUSG00000079429.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAAAATTAACTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	88187364	88186589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_88186600_88187400
64284	chr7	+	289	2	Antisense	novelGene_ENSMUSG00000052605.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	13	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTCCGAGACAGGGTCCC	NA	False	NA	NA	False	NA	NA	NA	4844900	4847975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_4844996_4847781
64285	chr7	+	951	5	NNC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	31	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.074805440417	22	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAAAAGAATTCATTTTA	NA	False	NA	NA	False	NA	NA	NA	109302989	109311385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109303236_109304157_109304239_109306604_109306719_109308147_109308229_109310956
64287	chr7	+	916	7	NIC	ENSMUSG00000078765.12	novel	500	7	NA	NA	0	1	intron_retention	FALSE	canonical	3	74	junction_1	192.589084725889	168	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	30262754	30264785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263727_30263898_30264033_30264127_30264224_30264519
64289	chr11	-	1729	13	FSM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	76	-319	20	-11	multi-exon	FALSE	canonical	3	99	junction_7	91.5034911295131	1	95	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGAAGCACTCTGTAGG	NA	False	NA	NA	False	NA	NA	NA	120508675	120500923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
64290	chr11	-	839	5	NNC	ENSMUSG00000018446.9	novel	1175	6	NA	NA	35	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2308.70862171908	70	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAGGAAAGTTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	70873798	70868677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870953_70873688
64291	chr4	-	3799	1	NIC	ENSMUSG00000036940.16	novel	3008	19	NA	NA	-3083	-2254	mono-exon	FALSE	NA	NA	NA	NA	NA	3	66	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCTGACACTCCCTTGCC	NA	False	NA	NA	False	NA	NA	NA	136291895	136288096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_136288100_136291900
64292	chr10	+	1808	6	ISM	ENSMUSG00000033255.9	ENSMUST00000099577.4	2838	14	39340	0	19768	0	3prime_fragment	FALSE	canonical	2	3	junction_3	1.89736659610103	33	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAGGTGTCTTGAAGTG	NA	False	NA	NA	False	NA	NA	NA	75829687	75845425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_75829767_75831613_75831765_75836222_75836392_75840528_75840745_75841823_75841927_75844335
64293	chr7	+	1604	3	FSM	ENSMUSG00000078815.9	ENSMUST00000108647.3	868	3	-241	-495	226	-9	multi-exon	FALSE	canonical	2	4	junction_2	11.5	29	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGTAGCCTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	3472936	3484174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3473509_3478953_3479029_3483217
64295	chr4	-	1332	1	Antisense	novelGene_ENSMUSG00000028763.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGAGCAAGTACCCAGGT	4521	False	NA	NA	False	NA	NA	NA	137244596	137243264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_137243300_137244600
64298	chr4	+	726	2	NIC	ENSMUSG00000050212.5	novel	1364	3	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTCTCACTGGTTAC	7144	False	NA	NA	False	NA	NA	NA	126042338	126043668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_126042425_126043028
64299	chr13	+	825	1	ISM	ENSMUSG00000078952.10	ENSMUST00000109431.10	2726	2	60270	943	12285	-943	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTGAATGAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	97631747	97632572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_97631700_97632600
64301	chr8	+	1229	6	NNC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	-19	-8	intron_retention	FALSE	non_canonical	0	0	junction_3	438.675552088329	3	42	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACACCAACCCACATGTC	NA	False	NA	NA	False	NA	NA	NA	71819566	71822365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71820014_71820174_71820338_71820413_71820489_71820602_71820756_71821751_71821948_71822170
64302	chr13	+	1281	5	NNC	ENSMUSG00000058569.9	novel	1420	5	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	286.260370991166	5	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGAAAAACTGTTCGTG	NA	False	NA	NA	False	NA	NA	NA	55740978	55745499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744784
64303	chr13	+	1739	7	FSM	ENSMUSG00000021400.9	ENSMUST00000021832.7	2633	7	890	4	812	-2	multi-exon	FALSE	canonical	3	161	junction_2	20.5081284697881	78	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTCTTCAGTTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	32986910	33006588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_32987028_32989320_32989513_32990741_32990984_33000235_33000466_33004201_33004358_33005021_33005102_33005866
64305	chr9	-	1533	10	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	39	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	644.9655938761	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATCCTGTGTATATTTGT	NA	False	NA	NA	False	NA	NA	NA	70328790	70314969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320252_70320360_70320555_70326075_70326190_70326282_70326404_70328439_70328493_70328698
64306	chr6	-	1440	4	FSM	ENSMUSG00000029814.11	ENSMUST00000203680.2	711	4	-732	3	-479	-3	multi-exon	FALSE	canonical	3	19	junction_1	219.654273803175	124	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	49192370	49144849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_49145040_49145403_49145453_49190200_49190262_49191230
64307	chr1	+	418	3	ISM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	11693	7	11693	-7	3prime_fragment	FALSE	canonical	3	2105	junction_2	105.5	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCAGCTTGTCTCATGCT	NA	False	NA	NA	False	NA	NA	NA	87153700	87155779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87153725_87153818_87153956_87155522
64308	chr18	+	1007	6	Antisense	novelGene_ENSMUSG00000041258.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGCCCGTGTGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	82651849	82664170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_82651911_82654854_82655111_82657440_82657701_82658217_82658371_82662185_82662385_82664092
64309	chr1	-	1887	7	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	3906	-215	intron_retention	FALSE	canonical	3	9	junction_6	9.68962790249909	30	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTGTTGAGGTTACCTGT	NA	False	NA	NA	False	NA	NA	NA	75097938	75006512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75006928_75007327_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75097876
64310	chr13	-	1509	1	Intergenic	novelGene_1342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCAGTTCCTGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	36051524	36050015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_36050000_36051500
64312	chr16	-	1139	8	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-3	-727	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	39.636614695125	1	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAAGCCGAGCGCTTGTA	NA	False	NA	NA	False	NA	NA	NA	93400954	93383141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93393185_93393224_93396099_93396196_93398525_93398687_93400861
64313	chr1	-	2398	10	FSM	ENSMUSG00000016528.11	ENSMUST00000016672.11	2854	10	451	5	451	-5	multi-exon	FALSE	canonical	3	81	junction_6	17.0105268787113	37	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTTTTTCATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	131025112	130981441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_130982973_130983495_130983577_130983665_130983752_130984150_130984276_130984625_130984702_130985230_130985358_130985737_130985818_130986088_130986154_130986359_130986500_131025025
64314	chr2	-	1357	5	NNC	ENSMUSG00000026849.19	novel	1401	5	NA	NA	-19	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	252.608763703875	2	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTTTCAGCGGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	30857919	30850648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857360_30857685
64315	chrX	+	1672	11	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	64.5585780512551	209	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTTTGAGTGGCATTTAT	3762	False	NA	NA	False	NA	NA	NA	7588211	7594412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7588470_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
64316	chr9	+	935	1	FSM	ENSMUSG00000032288.10	ENSMUST00000034827.10	924	1	-11	0	-11	0	mono-exon	FALSE	NA	NA	NA	NA	NA	348	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTGTCTGGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	56844747	56845682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_56844700_56845700
64317	chr15	-	1190	5	NIC	ENSMUSG00000034022.9	novel	2904	21	NA	NA	231	-3	intron_retention	FALSE	canonical	3	587	junction_4	15.352117117844	2	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAGACGAGTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	76481524	76480013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480899_76480976_76481294_76481388
64318	chr6	-	773	5	NNC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	8760	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	229.20787508286	3	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTAGAGATGACTTAGCC	9622	False	NA	NA	False	NA	NA	NA	51980735	51836150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856840_51980665
64319	chr4	-	2175	1	NIC	ENSMUSG00000040128.10	novel	1648	2	NA	NA	-34	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	122	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAAGGTAGTCTTGGC	1128	False	NA	NA	False	NA	NA	NA	33247609	33245434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_33245400_33247600
64320	chr5	-	1198	4	NNC	ENSMUSG00000032959.13	novel	1240	4	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1275.14783456664	2	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACCTGCGGGTATTTCC	NA	False	NA	NA	False	NA	NA	NA	117425651	117420720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117421531_117423785_117423887_117424200_117424310_117425473
64321	chr8	-	777	3	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	17	-371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3943.5	132	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCTGCCCTTATTAACT	NA	False	NA	NA	False	NA	NA	NA	46664050	46660204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660610_46662375_46662546_46663848
64323	chr19	+	1225	1	FSM	ENSMUSG00000044065.4	ENSMUST00000057038.4	906	1	458	-777	458	777	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CACAAAAAAAAAAAAAGTTA	NA	False	NA	NA	False	NA	NA	NA	41448709	41449934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41448700_41449900
64324	chr5	+	339	1	Intergenic	novelGene_965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197836	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
64325	chr9	+	1624	13	NNC	ENSMUSG00000038957.14	novel	5708	7	NA	NA	42194	12592	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGCTAGGCCCCACTCCC	5313	False	NA	NA	False	NA	NA	NA	57658043	57672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57658405_57659019_57659110_57659396_57659465_57659913_57659996_57660553_57660684_57660783_57660879_57661784_57661930_57662517_57662652_57665566_57665623_57665907_57666014_57668123_57668316_57669003_57669151_57672356
64326	chr15	-	1056	5	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	139.440623564297	1109	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8123	False	NA	NA	False	NA	NA	NA	85695860	85691172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695743
64327	chr4	-	991	3	Antisense	novelGene_ENSMUSG00000028847.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGCCCCTTGGAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	126169668	126166775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_126166848_126167680_126167865_126168933
64328	chr4	+	1139	3	NNC	ENSMUSG00000028797.21	novel	400	3	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	218	3	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3213	False	NA	NA	False	NA	NA	NA	129494509	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129495108_129501529
64329	chr5	-	1423	1	Intergenic	novelGene_754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATTACCCAGAGAACATA	NA	False	NA	NA	False	NA	NA	NA	97196787	97195364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_97195400_97196800
64330	chr14	-	2096	4	Intergenic	novelGene_521	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCCTGCACGGAACCTG	NA	False	NA	NA	False	NA	NA	NA	14915375	14901443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_14901538_14902730_14902847_14907121_14907271_14913638
64331	chr12	-	1262	3	FSM	ENSMUSG00000020644.10	ENSMUST00000020974.7	1270	3	10	-2	5	0	multi-exon	FALSE	canonical	2	5	junction_1	1	70	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGGGATTCTGAATGGTT	NA	False	NA	NA	False	NA	NA	NA	25146081	25143797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_25144576_25145309_25145374_25145661
64332	chr18	+	941	5	NIC	ENSMUSG00000024400.17	novel	4575	22	NA	NA	0	-1326	combination_of_known_splicesites	FALSE	canonical	1	19	junction_1	169.734167155585	2	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCTAAAGCCTGCAGA	5655	False	NA	NA	False	NA	NA	NA	31937150	31967149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_31937308_31962284_31962354_31962927_31963033_31966362_31966459_31966635
64333	chr9	-	1671	1	FSM	ENSMUSG00000025646.10	ENSMUST00000194199.2	2321	1	-33	683	21	-683	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCATGTGTAAAATATATAA	NA	False	NA	NA	False	NA	NA	NA	108903167	108901496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108901500_108903200
64334	chr19	-	811	1	ISM	ENSMUSG00000040022.15	ENSMUST00000171986.8	5363	5	39934	26	39280	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTGATTAAAGTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	59892152	59891341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_59891300_59892200
64335	chr4	-	1279	5	NIC	ENSMUSG00000034171.14	novel	5537	12	NA	NA	0	1305	intron_retention	FALSE	canonical	3	44	junction_1	7.10633520177595	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCCCTACTTTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	115874913	115861621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_115861677_115861910_115862632_115862783_115862919_115865376_115865491_115874659
64337	chr1	-	719	1	Antisense	novelGene_ENSMUSG00000097784.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGGCTCCCACAGCGGAA	NA	False	NA	NA	False	NA	NA	NA	186482337	186481618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_186481600_186482300
64338	chr9	-	697	2	Genic_Genomic	ENSMUSG00000058443.6	novel	768	1	NA	NA	-13	-15	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	50256281	50255515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_50256117_50256185
64339	chr3	-	923	7	FSM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	29	231	29	-2	multi-exon	FALSE	canonical	3	1538	junction_1	134.402380931292	6940	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGAGTTGGATTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	94794243	94791634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
64340	chr2	-	1141	1	Intergenic	novelGene_2778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTCTGCCTCCAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	166093727	166092586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_166092600_166093700
64341	chr15	+	2157	3	Intergenic	novelGene_3329	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	5	25	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCAGATCTTAGCTTCACG	9627	False	NA	NA	False	NA	NA	NA	79856654	79876235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_79856837_79873451_79873597_79874405
64342	chr2	-	2483	4	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	93	73	intron_retention	FALSE	canonical	3	15	junction_3	9.46337971105226	5	89	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGGGCTCTTCTCTGA	NA	False	NA	NA	False	NA	NA	NA	166349898	166343947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166344399_166345246_166345340_166347371_166348119_166348706
64343	chr18	+	1032	7	FSM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	24	3	15	-3	multi-exon	FALSE	canonical	3	396	junction_3	27.1871088733041	3	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGCGGTTTTATCTGGA	NA	False	NA	NA	False	NA	NA	NA	67774692	67787229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
64344	chr6	-	1606	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	168	51	94	-51	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATAGTCATATTATTTTG	3007	False	NA	NA	False	NA	NA	NA	52617206	52523263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
64345	chr6	-	1317	4	FSM	ENSMUSG00000030008.10	ENSMUST00000139875.8	1000	4	80	-397	80	-1	multi-exon	FALSE	canonical	3	19	junction_1	61.5593661074865	314	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGGTTTGTGCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	85428847	85423792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_85424790_85424917_85425028_85425472_85425574_85428738
64346	chr15	-	896	7	NNC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	-18	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	576.51782761295	8	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGTTGTAGATGCA	NA	False	NA	NA	False	NA	NA	NA	82128892	82118281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_82118711_82121485_82121539_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
64349	chr12	+	1910	1	NIC	ENSMUSG00000020952.11	novel	2749	14	NA	NA	-7830	-442	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACACTAGAAAAGAATCCAT	NA	False	NA	NA	False	NA	NA	NA	51461646	51463556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_51461600_51463600
64350	chr12	+	1534	14	Antisense	novelGene_ENSMUSG00000021098.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTAAGAGTCTAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	72939501	72964654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_72939756_72945262_72945308_72945483_72945570_72949186_72949264_72949989_72950109_72952958_72953057_72954594_72954716_72956544_72956591_72956681_72956866_72959958_72960049_72962129_72962257_72963447_72963505_72963596_72963656_72964483
64351	chr1	+	1079	9	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	1	-5182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	340.359162319747	1	55	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGTTCACTACATGTGA	NA	False	NA	NA	False	NA	NA	NA	15875881	15908512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889263_15889874_15889988_15901730_15901791_15903624_15903714_15908405
64353	chr11	-	1353	5	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	275	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	696.616286057109	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	6977	False	NA	NA	False	NA	NA	NA	106581898	106545042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545320_106545368_106545909_106575951_106576075_106579601_106579878_106581761
64354	chr17	+	2457	11	FSM	ENSMUSG00000036368.9	ENSMUST00000225357.2	2118	11	201	-540	201	540	multi-exon	FALSE	canonical	1	2	junction_3	2.75862284482674	13	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACTAAAATAATGAGT	3781	False	NA	NA	False	NA	NA	NA	79922691	79990218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_79922798_79928734_79929202_79957730_79957906_79959127_79959231_79966841_79966903_79974299_79974376_79975379_79975458_79977985_79978085_79979778_79979833_79979921_79980003_79989061
64356	chr11	-	3286	13	NNC	ENSMUSG00000033987.17	novel	1361	5	NA	NA	-2963	126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.01900690659762	11	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTACCACACAAACCCACC	4379	False	NA	NA	False	NA	NA	NA	117987491	117974429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_117975808_117976893_117976999_117977738_117977896_117978955_117979117_117979774_117979908_117981541_117981650_117982219_117982346_117984344_117984498_117984919_117985047_117985330_117985423_117985512_117985861_117986631_117986755_117987216
64357	chr10	+	693	8	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	7	-6	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_7	789.099667795067	63	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCAGTTGTGTGTTCTG	9707	False	NA	NA	False	NA	NA	NA	80085300	80092620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092513
64358	chr14	-	1187	1	Genic_Genomic	ENSMUSG00000114797.2	novel	NA	NA	NA	NA	12879	6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGTCTCAGCAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	60456707	60455520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_60455500_60456700
64359	chr6	-	2426	1	ISM	ENSMUSG00000042599.9	ENSMUST00000002305.9	9566	20	67625	116	15518	-116	mono-exon	FALSE	NA	NA	NA	NA	NA	15	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACTTTTGTTCTGATTTT	2133	False	NA	NA	False	NA	NA	NA	39116098	39113672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_39113700_39116100
64360	chr2	-	636	5	NNC	ENSMUSG00000027239.15	novel	714	5	NA	NA	-21	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1151.49500650242	1	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTCACGCCCACACCAA	NA	False	NA	NA	False	NA	NA	NA	91762065	91760311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91760372_91761171_91761325_91761440_91761600_91761716_91761794_91761878
64362	chr7	-	842	6	NNC	ENSMUSG00000074227.13	novel	1211	6	NA	NA	274	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	491.498931840141	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAAAACTTACTATGT	743	False	NA	NA	False	NA	NA	NA	28981061	28955775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28956178_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
64363	chr3	+	2567	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	28	48717	28	1441	5prime_fragment	FALSE	canonical	3	119	junction_1	0	128	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTCTTACAAAGTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	40594943	40610487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_40595159_40608135
64364	chr10	+	870	6	NNC	ENSMUSG00000006732.15	novel	1791	6	NA	NA	0	1132	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_5	156.385932871214	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGGCAA	NA	False	NA	NA	False	NA	NA	NA	126877826	126883366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126883174
64365	chr10	-	2057	10	Antisense	novelGene_ENSMUSG00000020218.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCTGGAGAGGAGGGAGC	NA	False	NA	NA	False	NA	NA	NA	120936542	120870084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_120870394_120870868_120871009_120911148_120911258_120918028_120918176_120919798_120919886_120920810_120920906_120926013_120926112_120931903_120932000_120932545_120932642_120935662
64367	chr16	+	861	1	ISM	ENSMUSG00000055447.20	ENSMUST00000084838.14	5250	10	56645	1860	45457	-1860	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCCTGCCTGGGCATTA	NA	False	NA	NA	False	NA	NA	NA	49732652	49733513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_49732700_49733500
64368	chr16	+	1643	1	ISM	ENSMUSG00000055447.20	ENSMUST00000084838.14	5250	10	57700	23	46512	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	6	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTAATAAAACATTTTAAG	NA	False	NA	NA	False	NA	NA	NA	49733707	49735350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_49733700_49735400
64370	chrX	+	2643	14	NIC	ENSMUSG00000025592.18	novel	2520	13	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.77472127581086	7	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCATTTCTCTGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	112207920	112745590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_112208633_112362154_112362194_112465944_112466058_112549590_112549723_112614405_112614565_112633941_112634115_112659967_112660104_112662516_112662601_112675482_112675573_112724539_112724689_112724813_112724962_112727319_112727467_112729645_112729712_112745095
64371	chr10	+	909	8	NNC	ENSMUSG00000035351.17	novel	1267	10	NA	NA	13	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	181.928108698722	66	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTCCTATTGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	87982866	88014254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010315_88014082
64372	chr10	+	1356	10	NNC	ENSMUSG00000037846.19	novel	2246	12	NA	NA	-2	-12408	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	26.1236376571955	13	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGTGTAATAAACTCGTA	NA	False	NA	NA	False	NA	NA	NA	67815525	67865720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67865438
64373	chr2	+	697	1	ISM	ENSMUSG00000044647.17	ENSMUST00000122912.8	10672	7	185070	13	81888	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	13	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAAGTTGTAGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	65861180	65861877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_65861200_65861900
64374	chrX	-	2873	1	NIC	ENSMUSG00000041353.13	novel	1402	3	NA	NA	15123	-565	mono-exon	FALSE	NA	NA	NA	NA	NA	6	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAACTTTGAAACCCCAC	NA	False	NA	NA	False	NA	NA	NA	149203395	149200522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_149200500_149203400
64375	chr7	+	1941	1	FSM	ENSMUSG00000039361.12	ENSMUST00000207106.2	1873	1	-191	123	-191	-123	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTTAGCTGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	89842115	89844056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_89842100_89844100
64377	chr14	-	1735	4	ISM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	3560	423	3560	-423	3prime_fragment	FALSE	canonical	3	222	junction_3	6.37704215656966	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCAAATTTCTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	14385846	14378361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771
64378	chr7	-	776	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	-28	0	-28	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	1932	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	NA	False	NA	NA	NA	127494817	127492234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127492664_127493676_127493787_127494580
64379	chr7	-	898	1	NIC	ENSMUSG00000030823.7	novel	3878	3	NA	NA	22	-2971	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCAGCTCTTGCTTTCCA	NA	False	NA	NA	False	NA	NA	NA	126986316	126985418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126985400_126986300
64380	chr3	+	2282	8	ISM	ENSMUSG00000027668.14	ENSMUST00000118286.8	2789	17	30837	-320	-517	320	3prime_fragment	FALSE	canonical	3	515	junction_2	33.4737179876746	2	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTAACGAGGCCTATCATT	NA	False	NA	NA	False	NA	NA	NA	32616539	32631822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_32617288_32617523_32617629_32617941_32618045_32618224_32618455_32622405_32622559_32623636_32623834_32628382_32628518_32631211
64381	chr11	-	1311	7	NNC	ENSMUSG00000020553.9	novel	2723	6	NA	NA	26	-763	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.9547972583658	60	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCTCTGTGTGCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	89893694	89874253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_89874663_89875285_89875583_89876918_89876987_89878021_89878194_89879520_89879601_89881896_89882015_89893527
64382	chr16	+	3406	1	NIC	ENSMUSG00000022770.18	novel	6143	26	NA	NA	1473	-104759	mono-exon	FALSE	NA	NA	NA	NA	NA	3	87	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATATCTGGTGATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	31484440	31487846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_31484400_31487800
64384	chr10	-	2008	3	FSM	ENSMUSG00000020027.19	ENSMUST00000172070.8	2153	3	114	31	-87	-31	multi-exon	FALSE	canonical	3	27	junction_2	233.5	10	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACCTGACTTTTACAA	NA	False	NA	NA	False	NA	NA	NA	95251232	95247382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_95248973_95250692_95251054_95251175
64386	chr12	+	1674	4	FSM	ENSMUSG00000020564.18	ENSMUST00000110824.9	1675	4	-2	3	-2	-3	multi-exon	FALSE	canonical	2	8	junction_2	2.35702260395516	35	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAAATGCCTGTACATTG	NA	False	NA	NA	False	NA	NA	NA	33197707	33301142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_33197915_33198431_33198501_33267710_33267816_33299849
64388	chr16	-	1058	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	44	6	44	-6	multi-exon	FALSE	canonical	2	125	junction_1	37.5	152	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAAGTGTGAGTGCATGA	NA	False	NA	NA	False	NA	NA	NA	16950203	16948007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16948653_16949460_16949658_16949987
64390	chr12	-	1343	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	109.852102278473	1	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCAAGGGTTTGTTTCAT	7686	False	NA	NA	False	NA	NA	NA	110807347	110774233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781446_110781564_110781640_110807179
64391	chr5	-	2140	7	FSM	ENSMUSG00000036285.11	ENSMUST00000047860.9	2288	7	79	69	54	-69	multi-exon	FALSE	canonical	3	116	junction_4	16.2138486760204	58	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAGTTTTTTAACTATTT	NA	False	NA	NA	False	NA	NA	NA	77457852	77442097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_77442404_77444932_77445051_77447504_77447622_77452032_77452165_77454120_77454324_77455399_77455565_77456753
64392	chr2	+	1900	1	Intergenic	novelGene_2613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATATATTGATTGAGTC	NA	False	NA	NA	False	NA	NA	NA	34956850	34958750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_34956800_34958800
64393	chr6	-	1438	1	Intergenic	novelGene_4240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTAAGTGACCCTTCCAC	NA	False	NA	NA	False	NA	NA	NA	124454550	124453112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_124453100_124454600
64395	chr2	+	1667	9	FSM	ENSMUSG00000017652.17	ENSMUST00000017799.12	2986	9	13	1306	4	-12	multi-exon	FALSE	canonical	3	6	junction_1	6.06217782649107	44	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTACAATAAGCCTTAAA	NA	False	NA	NA	False	NA	NA	NA	164897559	164913562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164897679_164904205_164904285_164904580_164904707_164904941_164905089_164905387_164905482_164908422_164908485_164911548_164911636_164911736_164911769_164912641
64396	chr13	+	578	5	FSM	ENSMUSG00000042043.7	ENSMUST00000220819.2	633	5	35	20	35	2	multi-exon	FALSE	canonical	1	1	junction_1	650.566820165308	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTGTTTTATACTTT	NA	False	NA	NA	False	NA	NA	NA	94925452	94979410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_94925511_94951618_94951693_94968867_94968974_94973615_94973703_94979157
64399	chr12	+	1194	7	NNC	ENSMUSG00000021103.13	novel	1294	7	NA	NA	36	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.412091913608	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACATTTTTGTGGGATTTT	NA	False	NA	NA	False	NA	NA	NA	73170526	73319623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_73170701_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73274036_73274128_73319187
64400	chr5	-	796	8	Antisense	novelGene_ENSMUSG00000077426.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	39	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGAGTCACGTACGCATGC	9705	False	NA	NA	False	NA	NA	NA	108055824	108048436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_108048525_108049752_108049803_108049893_108049997_108051129_108051270_108051533_108051732_108052579_108052665_108055073_108055142_108055760
64401	chr17	+	2230	5	Intergenic	novelGene_261	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	3.26917420765551	29	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACCCATAAAATAAATAAATT	NA	False	NA	NA	False	NA	NA	NA	48021247	48024997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_48021828_48021931_48022589_48022810_48022898_48023277_48023442_48024255
64402	chr6	-	1506	8	NNC	ENSMUSG00000030083.12	novel	1845	12	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	140.32396918036	1	74	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATAAAGCTTGAATTCAC	9275	False	NA	NA	False	NA	NA	NA	88816571	88812923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88813435_88813506_88813708_88815113_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312
64403	chr6	-	981	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	101	-189	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	62.4128191960594	1	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCATTGAGCACAGGGCT	NA	False	NA	NA	False	NA	NA	NA	83687813	83669976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672702_83672781_83672843_83673961_83674051_83687715
64404	chr11	-	873	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	-54	0	-40	0	multi-exon	FALSE	canonical	3	61	junction_1	0	309	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6765	False	NA	NA	False	NA	NA	NA	88857797	88855483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88856100_88857540
64405	chr12	+	1770	5	Antisense	novelGene_ENSMUSG00000021098.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGGGTTCTGGGAACAC	NA	False	NA	NA	False	NA	NA	NA	72958579	72964619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_72960049_72962129_72962257_72963447_72963505_72963596_72963656_72964561
64406	chr19	-	1080	6	NNC	ENSMUSG00000024997.8	novel	1478	7	NA	NA	1294	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	363.114086755113	1	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAACATTAAAATATTT	2741	False	NA	NA	False	NA	NA	NA	60861700	60852522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60852567_60852657_60853158_60853603_60853759_60858473_60858578_60859857_60860000_60861565
64407	chrX	-	1640	8	FSM	ENSMUSG00000031304.19	ENSMUST00000033664.14	1670	8	20	10	20	-10	multi-exon	FALSE	canonical	3	20	junction_5	5.61702950038214	78	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCAAGAATGTCTGTTAC	NA	False	NA	NA	False	NA	NA	NA	100311841	100307993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_100308644_100308981_100309049_100309235_100309333_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100311660
64408	chr19	+	797	4	FSM	ENSMUSG00000071653.10	ENSMUST00000190843.2	830	4	22	11	22	-11	multi-exon	FALSE	canonical	3	137	junction_1	1438.49141657347	10	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCGTTCACCGTGTGGG	NA	False	NA	NA	False	NA	NA	NA	8866324	8868094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8866613_8867000_8867092_8867366_8867465_8867774
64409	chr4	-	1811	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105859.8	1801	5	-12	2	-12	-1	multi-exon	FALSE	canonical	3	9	junction_3	5.49431524395898	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTTTTTTGTCACCTTG	5717	False	NA	NA	False	NA	NA	NA	135125513	135096888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135125193
64410	chr1	-	1235	1	Intergenic	novelGene_440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTTTCTTAATAATGTT	NA	False	NA	NA	False	NA	NA	NA	128286579	128285344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_128285300_128286600
64411	chr17	-	2242	11	NNC	ENSMUSG00000002249.22	novel	3443	12	NA	NA	-4956	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	2.6	15	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGACAGTTGTGCCATATG	265	False	NA	NA	False	NA	NA	NA	28560446	28550690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872_28554011_28555475_28555548_28559127_28559193_28560322
64416	chr5	-	1430	1	Antisense	novelGene_ENSMUSG00000054256.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTAAAGAGCAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	115593752	115592322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115592300_115593800
64417	chr3	-	1003	1	ISM	ENSMUSG00000027508.16	ENSMUST00000161949.8	8256	9	140929	4269	12252	150	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGTCCAGAGACATCAAAC	3344	False	NA	NA	False	NA	NA	NA	9757810	9756807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_9756800_9757800
64419	chr19	+	3054	8	FSM	ENSMUSG00000025019.18	ENSMUST00000067795.13	4833	8	31	1748	31	732	multi-exon	FALSE	canonical	2	2	junction_7	35.0218590632322	22	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCCCGACCCCACCCCTT	NA	False	NA	NA	False	NA	NA	NA	41471106	41548952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313_41534447_41540887_41541176_41544046_41544141_41546749
64421	chr6	+	739	2	FSM	ENSMUSG00000030037.10	ENSMUST00000129656.2	710	2	-29	0	-29	0	multi-exon	FALSE	canonical	3	782	junction_1	0	2143	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7434	False	NA	NA	False	NA	NA	NA	83086071	83086920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83086185_83086294
64422	chr11	+	1088	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	283.995352074642	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCTTGATTTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	96679969	96698972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96680099_96691580_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
64423	chr17	-	2489	11	NIC	ENSMUSG00000002625.11	novel	1987	15	NA	NA	-5	-463	intron_retention	FALSE	canonical	3	35	junction_1	140.961022981532	4	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGCTCCCAACCCTACC	NA	False	NA	NA	False	NA	NA	NA	32569556	32552270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32553671_32554084_32554145_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
64424	chr17	+	1171	6	FSM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	31	10	-10	-1	multi-exon	FALSE	canonical	3	16	junction_1	17.3735431043872	139	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTATTTGATTTGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	34482213	34488383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34482380_34483734_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
64425	chr13	-	2672	8	ISM	ENSMUSG00000021557.16	ENSMUST00000169745.8	4143	25	78946	-319	3362	-24	3prime_fragment	FALSE	canonical	3	18	junction_3	5.31075151298317	32	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAAAACTATATCAGA	NA	False	NA	NA	False	NA	NA	NA	59625790	59597374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807
64426	chr10	-	1102	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	28	0	28	0	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	1106	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	128245715	128237263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
64427	chr5	+	1200	9	NNC	ENSMUSG00000019179.11	novel	1456	9	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2571.53961664992	1	61	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGTCTCTGTAGATTTCC	637	False	NA	NA	False	NA	NA	NA	135807517	135819242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135807656_135812158_135812321_135813037_135813122_135814792_135814893_135815100_135815213_135816394_135816473_135818054_135818155_135818487_135818602_135818930
64428	chr7	+	1463	1	NIC	ENSMUSG00000030523.19	novel	5711	27	NA	NA	-1137	304	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATGTACAAAGCACGCCC	NA	False	NA	NA	False	NA	NA	NA	63847872	63849335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_63847900_63849300
64429	chr12	-	2350	4	FSM	ENSMUSG00000054013.7	ENSMUST00000066791.7	2380	4	27	3	27	-3	multi-exon	FALSE	canonical	1	1	junction_3	2.16024689946929	14	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATGCTGTGTGGATGAG	NA	False	NA	NA	False	NA	NA	NA	112477579	112466625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_112468357_112469675_112469755_112470967_112471106_112477177
64430	chr17	-	854	6	NNC	ENSMUSG00000024145.7	novel	988	6	NA	NA	38	-7	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	135.20562118492	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAGATTGTGGCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	87332796	87304690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331253_87332725
64431	chr11	-	1674	7	NIC	ENSMUSG00000020774.10	novel	1746	7	NA	NA	4	-5	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	6.39444203108363	66	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTAGTGATGACTG	NA	False	NA	NA	False	NA	NA	NA	73215456	73195822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73213904_73214058_73215080
64432	chr5	+	825	3	NNC	ENSMUSG00000029198.4	novel	3528	4	NA	NA	4449	-2383	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1292.5	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTGCACAGTCTACC	NA	False	NA	NA	False	NA	NA	NA	36626790	36629041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_36626945_36627945_36628028_36628452
64433	chr8	+	2119	16	NNC	ENSMUSG00000038416.16	novel	2301	18	NA	NA	27	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	232.763532844435	3	74	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTATCTTTTTCATTGTGT	NA	False	NA	NA	False	NA	NA	NA	13807703	13831882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13807855_13808997_13809053_13809139_13809253_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
64434	chrX	-	2642	2	Genic_Genomic	ENSMUSG00000031325.16	novel	685	4	NA	NA	-20	-76159	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	129	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATTGACATACTTCAT	NA	False	NA	NA	False	NA	NA	NA	102355408	102352697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_102354224_102354292
64436	chr15	+	1981	8	ISM	ENSMUSG00000078932.9	ENSMUST00000190436.7	2041	13	-7	14067	-7	-14058	5prime_fragment	FALSE	canonical	3	23	junction_5	5.72855361593241	4	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATTCAGTATATGTTTA	NA	False	NA	NA	False	NA	NA	NA	91083689	91131030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91124845_91125023_91126772_91126889_91129815
64438	chr2	+	1070	8	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_6	112.260811487885	42	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTGTCAATGGGGGAAT	201	False	NA	NA	False	NA	NA	NA	26476670	26482694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26482129_26482293_26482429
64440	chr12	+	1095	1	ISM	ENSMUSG00000020674.18	ENSMUST00000220271.2	6377	23	78943	6	16587	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	16	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGTTAAGTGGAGAATCTG	NA	False	NA	NA	False	NA	NA	NA	30066549	30067644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_30066500_30067600
64441	chr6	+	2043	14	NNC	ENSMUSG00000038759.16	novel	2409	15	NA	NA	6274	-268	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	109.856819133175	1	126	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGATCAGCACCCTGGTG	NA	False	NA	NA	False	NA	NA	NA	35160837	35182320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173794_35175770_35175922_35176788_35176995_35178922_35179104_35180897_35180949_35182259
64448	chrY	+	863	3	NNC	ENSMUSG00000096768.9	novel	774	4	NA	NA	172	5924	intron_retention	FALSE	canonical	3	68	junction_1	974.5	160	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTGAAATGGATATGCAG	4297	False	NA	NA	False	NA	NA	NA	90796351	90833658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrY_+_90796989_90804564_90804687_90833554
64449	chr19	+	1205	1	ISM	ENSMUSG00000047044.8	ENSMUST00000062753.3	1677	2	4029	2	3986	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	199	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCTATGTATCAGTGACT	NA	False	NA	NA	False	NA	NA	NA	18694585	18695790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_18694600_18695800
64450	chr10	+	1850	7	NIC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	0	5528	intron_retention	FALSE	canonical	3	31	junction_5	483.827104105037	2	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTTATCCCAAACCCA	NA	False	NA	NA	False	NA	NA	NA	21171916	21218603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997_21185214_21212865_21212975_21217612
64451	chr2	+	840	5	ISM	ENSMUSG00000017760.17	ENSMUST00000103093.10	2534	15	4483	441	174	-441	3prime_fragment	FALSE	canonical	3	937	junction_1	88.6086903187266	1	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164679275	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
64452	chr4	+	1356	5	FSM	ENSMUSG00000028797.21	ENSMUST00000181579.8	449	5	37	-944	11	-30	multi-exon	FALSE	canonical	1	2	junction_4	266.321703959704	1	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGCAGCAGCTTTCAATA	3214	False	NA	NA	False	NA	NA	NA	129494510	129502284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501254
64455	chr11	+	1129	1	NIC	ENSMUSG00000034121.13	novel	2499	18	NA	NA	104	-2394	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAGAATAGGAACACTGG	7010	False	NA	NA	False	NA	NA	NA	87744594	87745723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87744600_87745700
64456	chr12	-	1313	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	21561	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	97.7650244208019	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCTTATGCAAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	110785800	110774240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110785664
64457	chrX	-	3129	1	Intergenic	novelGene_3977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTAGTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	92802051	92798922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_92798900_92802100
64458	chr17	-	1896	9	FSM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	10	80	10	-74	multi-exon	FALSE	canonical	2	6	junction_1	3.19912097301743	13	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATGCTTTTGGCTGGTGT	1103	False	NA	NA	False	NA	NA	NA	56424586	56418680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56419542_56419869_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
64459	chr15	-	2403	12	FSM	ENSMUSG00000053137.8	ENSMUST00000088823.5	2461	12	53	5	53	-5	multi-exon	FALSE	canonical	2	7	junction_8	5.74096487412616	21	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGCAAAAGGCTCTGGAT	NA	False	NA	NA	False	NA	NA	NA	89033778	89026694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029379_89029577_89029650_89030004_89030120_89030205_89030254_89030341_89030372_89030474_89030587_89030673_89030733_89030911_89031042_89033600
64460	chr8	+	1453	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	30	0	3	0	multi-exon	FALSE	canonical	3	39	junction_2	15.9269164205337	155	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	26210093	26214914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
64461	chr13	+	1170	4	NNC	ENSMUSG00000058569.9	novel	1420	5	NA	NA	330	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	317.323529260315	3	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGAAAAACTGTTCGTG	NA	False	NA	NA	False	NA	NA	NA	55741318	55745499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55741415_55742517_55742648_55743329_55743428_55744653
64462	chr5	-	1653	10	NIC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-25	180	intron_retention	FALSE	canonical	3	157	junction_6	15.3075467549285	1	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTCCCACAGTCTGATGA	NA	False	NA	-85	True	NA	NA	NA	24628553	24624193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24624461_24624597_24624679_24624780_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627557_24627645_24627714_24627795_24627885_24628446
64466	chr1	-	1508	1	ISM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	166167	29	46107	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	10	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTCTCAATAAATGACA	NA	False	NA	NA	False	NA	NA	NA	64829816	64828308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_64828300_64829800
64467	chr12	+	2143	13	NNC	ENSMUSG00000066438.7	novel	3535	13	NA	NA	88	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3.49602949390051	5	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGACTGAATAGTTCCTC	NA	False	NA	NA	False	NA	NA	NA	80739452	80769682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80739802_80752317_80752412_80752778_80752869_80753126_80753204_80753945_80754038_80754955_80755009_80763992_80764090_80765686_80765781_80767357_80767537_80767986_80768120_80768222_80768368_80768719_80768870_80769092
64468	chr9	-	2351	9	Antisense	novelGene_ENSMUSG00000099309.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGCAGTCACCCGGACAG	6115	False	NA	NA	False	NA	NA	NA	44314255	44308405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_44308770_44309563_44309918_44310544_44310777_44311089_44311335_44311784_44311944_44312142_44312228_44312715_44312830_44313367_44313508_44313597
64469	chr17	+	2328	1	Intergenic	novelGene_301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAATAAGAGGGACCCAGTG	NA	False	NA	NA	False	NA	NA	NA	80871482	80873810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_80871500_80873800
64470	chr7	+	1351	5	NNC	ENSMUSG00000042606.10	novel	2766	7	NA	NA	-24	200	intron_retention	FALSE	non_canonical	0	0	junction_4	83.7869321553188	35	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCCAAATTGGTCCCA	1452	False	NA	NA	False	NA	NA	NA	126461119	126464290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126462565_126463962
64471	chr7	-	1725	6	Antisense	novelGene_ENSMUSG00000030598.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACGTGGCTGCCAATCC	6679	False	NA	NA	False	NA	NA	NA	28436210	28416237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_28416472_28424047_28424151_28431835_28432298_28432853_28432966_28434701_28434791_28435485
64473	chr5	-	886	2	NNC	ENSMUSG00000075593.11	novel	3162	3	NA	NA	6131	843	intron_retention	FALSE	non_canonical	0	0	junction_1	0	47	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCCACGCCCCCTTCCT	7921	False	NA	NA	False	NA	NA	NA	138264880	138262339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138262363_138264017
64474	chr15	-	1662	15	NIC	ENSMUSG00000009733.10	novel	1903	14	NA	NA	-9	-16	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	28.3085225502779	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATATCTTTATGCTTGAA	NA	False	NA	NA	False	NA	NA	NA	100449871	100407428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_100407556_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
64475	chr6	+	1930	8	ISM	ENSMUSG00000029771.13	ENSMUST00000163511.7	2241	9	1949	4	-17	-4	3prime_fragment	FALSE	canonical	3	5	junction_6	3.45229884959845	20	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGGTCTGCCCATTTAT	68	False	NA	NA	False	NA	NA	NA	29531229	29537314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_29531331_29533950_29534141_29534533_29534593_29535039_29535074_29535251_29535510_29535723_29536117_29536202_29536322_29536538
64476	chr8	+	1359	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110146.9	1342	9	-17	0	-17	0	multi-exon	FALSE	canonical	3	100	junction_6	49.3303595669036	82	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8572	False	NA	NA	False	NA	NA	NA	70605410	70620138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
64477	chr11	-	1203	10	NNC	ENSMUSG00000057181.16	novel	4554	10	NA	NA	21	208	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	31.723730261878	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCTGCATGTGGGGGCT	NA	False	NA	NA	False	NA	NA	NA	80268820	80254596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_80254845_80255661_80255766_80258920_80259025_80259353_80259419_80261156_80261277_80264465_80264524_80264899_80265044_80266332_80266459_80267628_80267710_80268667
64478	chr11	-	2072	10	NIC	ENSMUSG00000033987.17	novel	13612	81	NA	NA	50858	-2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	3.80383172636082	31	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCCGTCTGATGCACTC	NA	False	NA	NA	False	NA	NA	NA	117929162	117913903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_117914324_117915419_117915646_117915928_117916073_117916343_117916527_117917498_117917682_117918149_117918330_117923418_117923611_117924561_117924790_117925074_117925203_117928974
64479	chr10	+	1078	1	FSM	ENSMUSG00000039910.11	ENSMUST00000219558.2	2411	1	1346	-13	1337	13	mono-exon	FALSE	NA	NA	NA	NA	NA	137	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTTTCTAAAAGTCAGT	NA	False	NA	NA	False	NA	NA	NA	17600326	17601404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_17600300_17601400
64481	chr11	+	2727	1	Intergenic	novelGene_2484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTAGGCAGCGTGTGGT	6515	False	NA	NA	False	NA	NA	NA	102406350	102409077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_102406400_102409100
64482	chr8	-	1460	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-6414	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	126.533263083929	441	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	NA	False	NA	NA	False	NA	NA	NA	71091520	71082042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71082825_71083982_71084275_71084799_71085030_71091364
64483	chr4	-	1011	5	Antisense	novelGene_ENSMUSG00000028333.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCGGCGTGCGGGCG	NA	False	NA	NA	False	NA	NA	NA	46472652	46451172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_46451350_46460087_46460238_46463804_46463929_46468557_46468797_46472331
64484	chr10	-	1558	1	Genic_Genomic	ENSMUSG00000097134.3	novel	NA	NA	NA	NA	3989	296	mono-exon	FALSE	NA	NA	NA	NA	NA	57	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTTGTATTCTATTTC	NA	False	NA	NA	False	NA	NA	NA	66749529	66747971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_66748000_66749500
64485	chr7	+	3090	4	FSM	ENSMUSG00000040424.16	ENSMUST00000108353.9	2409	4	-695	14	-695	-9	multi-exon	FALSE	canonical	1	1	junction_1	2.62466929133727	14	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTGTTCCAAACCCTGC	NA	False	NA	NA	False	NA	NA	NA	27221996	27230586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27223407_27227720_27228078_27228373_27229223_27230112
64492	chr6	-	631	4	NNC	ENSMUSG00000012483.5	novel	670	4	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	677.807412831174	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	8259197	8255935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_8256185_8256694_8256804_8257686_8257762_8258999
64493	chr14	+	947	5	Antisense	novelGene_ENSMUSG00000077611.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGACCTTCCGGGCGCCGG	NA	False	NA	NA	False	NA	NA	NA	31902257	31923825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_31902624_31911095_31911252_31915764_31915904_31920924_31920985_31923599
64494	chr8	+	742	2	FSM	ENSMUSG00000031765.9	ENSMUST00000212291.2	633	2	-110	1	19	1	multi-exon	FALSE	canonical	3	14831	junction_1	0	98	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGGTTTTCTTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	94905728	94906954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94905967_94906450
64495	chr14	+	1990	8	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14603	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9.21179368294486	1	105	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAACACAGCAGTGTA	NA	False	NA	NA	False	NA	NA	NA	16042687	16063936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_16042755_16044129_16044244_16044828_16044887_16047431_16047583_16058159_16058323_16059272_16059405_16060080_16060263_16062813
64496	chr11	-	1313	6	ISM	ENSMUSG00000015542.18	ENSMUST00000103038.8	1143	7	86	28	16	-28	intron_retention	FALSE	canonical	2	2	junction_5	44.6345157921535	18	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTGAGTAAAGCACTCG	NA	False	NA	NA	False	NA	NA	NA	115078072	115073685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574
64497	chr9	+	2026	10	NNC	ENSMUSG00000001942.9	novel	4947	10	NA	NA	11	-60	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	19.0204568235828	2	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGCTATGCAAGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	37525133	37558223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539104_37542638_37542901_37544253_37544356_37544908_37545051_37553935_37554094_37556047_37556244_37557592
64498	chr15	-	901	7	NNC	ENSMUSG00000022323.12	novel	1004	6	NA	NA	33	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.89145385724	12	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACTTTCCCTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	34495368	34484177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_34484362_34484420_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
64499	chr6	-	2379	8	ISM	ENSMUSG00000029669.15	ENSMUST00000031678.10	2490	9	348	1	2	-1	3prime_fragment	TRUE	canonical	2	5	junction_4	1.8070158058105	8	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGGTTTGCGTATTTA	-12	True	NA	NA	False	NA	NA	NA	21852166	21771394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_21772936_21795576_21795721_21799877_21799986_21806237_21806313_21835386_21835523_21836411_21836495_21851008_21851145_21852010
64501	chr4	+	1179	3	NNC	ENSMUSG00000087332.2	novel	354	2	NA	NA	14	713	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	166	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGATAGCTGGTCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	99457750	99461961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99457876_99458024_99458151_99461033
64503	chr10	+	457	3	ISM	ENSMUSG00000034127.16	ENSMUST00000035563.15	1244	8	22614	3	22614	-3	3prime_fragment	FALSE	canonical	2	2	junction_1	3	12	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATGCTTTTTTGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	115675802	115685517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_115675906_115679956_115680041_115685247
64504	chr5	+	1736	6	NNC	ENSMUSG00000036968.16	novel	1855	6	NA	NA	35	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	58.8204046228857	6	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTCAGAAGTTAAGTGTAA	5633	False	NA	NA	False	NA	NA	NA	138185781	138192171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190897_138190941_138191026
64505	chr1	+	1775	10	Antisense	novelGene_ENSMUSG00000026398.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGAAAAGAGAAACGAATTT	NA	False	NA	NA	False	NA	NA	NA	136770314	136881349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_136770458_136773305_136773449_136810001_136810141_136818411_136818539_136868144_136868790_136871026_136871169_136872698_136872816_136876459_136876595_136879836_136879903_136881231
64506	chr11	-	1276	12	NNC	ENSMUSG00000018574.15	novel	2020	19	NA	NA	-502	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	54.277219244593	1	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTCTGCCGTGAATGTC	NA	False	NA	NA	False	NA	NA	NA	69903902	69901015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901731_69901853_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783
64507	chr4	-	3460	5	NNC	ENSMUSG00000087385.9	novel	1909	4	NA	NA	-10	1688	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.433012701892219	3	65	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGCGGGAGTGTGTGGG	8072	False	NA	NA	False	NA	NA	NA	119396736	119385816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119387220_119387473_119388946_119390509_119390698_119390937_119391007_119396408
64508	chr1	+	1206	2	Intergenic	novelGene_493	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_1	0	109	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATCTGTACGTGTGTGT	2267	False	NA	NA	False	NA	NA	NA	181856039	181857627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_181856461_181856842
64509	chr10	+	783	7	ISM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	120	17290	63	-17290	5prime_fragment	FALSE	canonical	3	249	junction_3	38.620662287894	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGCAGATGGACAGCTGCA	NA	False	NA	NA	False	NA	NA	NA	44144473	44222997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952
64510	chr6	-	1013	7	FSM	ENSMUSG00000030086.17	ENSMUST00000113550.6	1042	7	16	13	16	-8	multi-exon	FALSE	canonical	3	15	junction_3	87.7648373021147	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTCATTGGCACCCAGT	NA	False	NA	NA	False	NA	NA	NA	89572618	89360140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89544568_89544714_89546324_89546395_89551349_89551573_89572440
64511	chr9	-	1488	5	NIC	ENSMUSG00000004099.17	novel	5367	39	NA	NA	-31	-5886	intron_retention	FALSE	canonical	3	862	junction_1	22.293496809608	2	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGACCAGGTGGGCCAGC	NA	False	NA	NA	False	NA	NA	NA	20864172	20849376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_20849443_20851771_20852880_20852994_20853103_20853878_20853916_20864003
64512	chr9	-	1156	11	NIC	ENSMUSG00000090626.10	novel	2794	12	NA	NA	-18	2	combination_of_known_splicesites	FALSE	canonical	3	37	junction_2	56.7235400869868	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTGGTGAAATAAACAGAAT	7858	False	NA	NA	False	NA	NA	NA	72399261	72368382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_72368561_72369137_72369273_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
64513	chr2	+	1409	7	NNC	ENSMUSG00000026728.10	novel	1777	8	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	99.7019168432695	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTGTTTTGGTGTGTT	81	False	NA	NA	False	NA	NA	NA	13579122	13587631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13584898_13587419
64514	chr14	+	815	6	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2186.55348894099	2	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1073	False	NA	NA	False	NA	NA	NA	76082767	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084685_76084801_76085538
64516	chr19	-	2290	7	NIC	ENSMUSG00000025221.17	novel	1005	8	NA	NA	-7	-8	intron_retention	FALSE	canonical	3	6	junction_6	7.06320670013903	46	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACAGCCCGCTGTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	45800737	45780792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45800636
64517	chr16	-	1005	6	NIC	ENSMUSG00000022548.15	novel	2074	6	NA	NA	17	3	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	60.0553078420218	631	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTCCTGTGGATTC	8727	False	NA	NA	False	NA	NA	NA	31133395	31115936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_31116484_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
64518	chr8	+	2787	12	ISM	ENSMUSG00000014782.17	ENSMUST00000014927.8	4167	21	2384	14	2384	-7	3prime_fragment	FALSE	canonical	2	5	junction_4	3.35994883865024	12	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCACCGTTGACTGGGC	NA	False	NA	NA	False	NA	NA	NA	106104396	106109480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106104516_106104931_106105115_106105312_106105819_106105886_106106134_106106754_106106845_106106925_106107148_106107233_106107405_106107482_106107661_106108026_106108144_106108265_106108491_106108572_106108689_106108867
64519	chr14	-	2765	1	Intergenic	novelGene_644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGATAACTGTGTGCGT	NA	False	NA	NA	False	NA	NA	NA	120087958	120085193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_120085200_120088000
64520	chr8	+	1333	1	NIC	ENSMUSG00000031960.15	novel	2221	8	NA	NA	266	515	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGTTCAATCCCTGGTG	NA	False	NA	NA	False	NA	NA	NA	111768623	111769956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111768600_111770000
64522	chr3	-	1627	8	NNC	ENSMUSG00000004896.17	novel	2492	8	NA	NA	-12	-24	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	39.7810333229907	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTTTAAGACTTCTGT	9431	False	NA	NA	False	NA	NA	NA	87837463	87830993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87834968_87835230_87835356_87837162
64523	chr12	+	1607	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	258	-573	258	-27	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATAAAGAATTTAATTGT	NA	False	NA	NA	False	NA	NA	NA	72132888	72148208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
64524	chr10	-	1269	10	NNC	ENSMUSG00000004934.15	novel	2571	11	NA	NA	79	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	224.038907555731	11	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAACGAAGAGTAGTCAG	NA	False	NA	NA	False	NA	NA	NA	81003678	80989132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_80989207_80991483_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
64525	chr8	-	2785	1	Antisense	novelGene_ENSMUSG00000036054.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCCTAGCACAACAAAAATT	7842	False	NA	NA	False	NA	NA	NA	70715754	70712969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70713000_70715800
64527	chr5	+	1662	8	NNC	ENSMUSG00000107385.4	novel	1714	7	NA	NA	4	-81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6.45233702322069	2	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCACTTGCATCTCAG	8036	False	NA	NA	False	NA	NA	NA	67621249	67634894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_67621362_67623669_67623772_67624135_67624364_67625223_67625369_67626054_67626159_67630824_67630973_67631226_67631405_67634249
64528	chr13	+	630	3	NNC	ENSMUSG00000062248.6	novel	692	3	NA	NA	93	-5	at_least_one_novel_splicesite	FALSE	canonical	2	44	junction_1	1735	74	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCACCATTGTTGAAATTA	NA	False	NA	NA	False	NA	NA	NA	51799360	51804691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_51799544_51803620_51803749_51804372
64529	chr5	-	2103	4	FSM	ENSMUSG00000033615.10	ENSMUST00000046892.10	2189	4	77	9	53	-9	multi-exon	FALSE	canonical	3	7	junction_1	1.4142135623731	31	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACCGTGTGGCTATTCCT	NA	False	NA	NA	False	NA	NA	NA	108697813	108666428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_108668193_108673257_108673434_108696371_108696476_108697754
64530	chr17	-	1869	1	Intergenic	novelGene_311	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGAGGCAGAGGCAGATGG	4405	False	NA	NA	False	NA	NA	NA	87436512	87434643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_87434600_87436500
64532	chr7	-	2180	4	FSM	ENSMUSG00000040364.9	ENSMUST00000040636.9	2470	4	236	54	236	-54	multi-exon	TRUE	canonical	0	0	junction_3	5.43650214343336	25	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGAAGGGCTAGTAATCTG	NA	False	NA	NA	False	NA	NA	NA	45343590	45327163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45328949_45333603_45333716_45334689_45334780_45343397
64533	chr4	-	2352	1	Intergenic	novelGene_1804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTATTTCATGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	15986375	15984023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_15984000_15986400
64534	chr2	-	2665	9	NNC	ENSMUSG00000027016.18	novel	2642	8	NA	NA	-36	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2.34520787991171	10	18	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTCAATAAAAGTACCAAA	NA	False	NA	NA	False	NA	NA	NA	77349915	77240994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_77242485_77244297_77244400_77244916_77245096_77246073_77246320_77280494_77280658_77307078_77307190_77314080_77314168_77333883_77334027_77349771
64535	chr11	+	627	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	3	-267	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5640	479	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75656153
64536	chr5	-	1259	2	Intergenic	novelGene_786	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTGGATTTCTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	104917092	104915737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_104916590_104916685
64541	chr7	-	1511	5	ISM	ENSMUSG00000032637.16	ENSMUST00000167759.8	4023	22	8216	301	-822	137	3prime_fragment	FALSE	canonical	3	887	junction_2	45.3486493734929	1	67	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGGTCCTTCAAGTGGG	NA	False	NA	NA	False	NA	NA	NA	126093370	126091187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310
64542	chr17	-	994	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	-10	0	-10	0	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	423	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGCCTGATCCCTAAC	NA	False	NA	NA	False	NA	NA	NA	23896452	23894418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
64543	chr8	-	1307	3	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	34	-6	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_2	115.5	453	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTATAGGCGTCTCAGT	688	False	NA	NA	False	NA	NA	NA	71085072	71082049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71082825_71083982_71084242_71084799
64544	chr14	+	636	3	ISM	ENSMUSG00000040618.8	ENSMUST00000226770.2	2417	9	-97	5099	43	-485	5prime_fragment	FALSE	canonical	3	1574	junction_1	29	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACGAGGCAGGGACATAG	8934	False	NA	NA	False	NA	NA	NA	55777765	55781230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_55777971_55779862_55780109_55781045
64545	chr17	-	3549	11	FSM	ENSMUSG00000014773.14	ENSMUST00000014917.8	3581	11	32	0	32	0	multi-exon	FALSE	canonical	2	3	junction_7	1.34536240470737	5	66	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGTGTGACTTTTTAG	NA	False	NA	NA	False	NA	NA	NA	15596206	15587615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15588298_15588395_15588514_15588628_15589428_15590468_15590686_15590792_15590963_15591084_15591216_15591867_15591929_15593698_15593957_15594151_15594213_15594927_15595222_15595448
64546	chr8	+	924	1	FSM	ENSMUSG00000094530.3	ENSMUST00000180210.3	597	1	-74	-253	-74	253	mono-exon	FALSE	NA	NA	NA	NA	NA	3	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGAACTTGGTGATTCA	NA	False	NA	NA	False	NA	NA	NA	129979404	129980328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_129979400_129980300
64547	chr7	-	923	6	FSM	ENSMUSG00000060538.15	ENSMUST00000032926.12	941	6	18	0	-5	0	multi-exon	FALSE	canonical	3	26	junction_5	14.8781719307178	336	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6237	False	NA	NA	False	NA	NA	NA	126497430	126485391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496400_126497395
64548	chr4	-	911	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	15	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1003.80587764767	1	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTTTGTGTGTGTTT	14	False	NA	NA	False	NA	NA	NA	41098168	41092722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093136_41093507_41093648_41093957_41094000_41094265_41094385_41094700_41094835_41098105
64550	chr16	+	2350	15	NNC	ENSMUSG00000022702.17	novel	1911	16	NA	NA	-26	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	54.7014625033006	2	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTGCTGATTATCCAGA	NA	False	NA	NA	False	NA	NA	NA	18695993	18746761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18696032_18696171_18696270_18713528_18713587_18714652_18714797_18715203_18715524_18716447_18716539_18718112_18718208_18729397_18729494_18730795_18730957_18735189_18735358_18737725_18737840_18741066_18741138_18741603_18741710_18744397_18744614_18746187
64551	chr15	-	1488	3	NIC	ENSMUSG00000061360.9	novel	1663	4	NA	NA	7	114	intron_retention	FALSE	canonical	3	1228	junction_2	83	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATTACGCTAATAAAGTT	NA	False	NA	NA	False	NA	NA	NA	81756105	81749555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81750094_81754532_81755391_81756013
64552	chr19	-	2212	3	Antisense	novelGene_ENSMUSG00000099988.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_2	0.5	60	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCTTACACGAGTCTCT	5192	False	NA	NA	False	NA	NA	NA	53052897	53038333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_53040340_53050500_53050648_53052838
64553	chr16	-	1258	6	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	3	252	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	144.088028649156	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTGGGTTTTGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	45563260	45551661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45560681_45560866_45563139
64555	chr9	-	1648	1	Genic_Genomic	ENSMUSG00000042210.18	novel	NA	NA	NA	NA	348	1239	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAAACCTCTCATTAACT	NA	False	NA	NA	False	NA	NA	NA	106321000	106319352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_106319400_106321000
64556	chr11	-	1405	5	NIC	ENSMUSG00000056962.12	novel	2072	6	NA	NA	-160	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	126.084049348044	161	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	116733706	116728257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116728590_116729815_116729955_116731273_116731372_116731894_116732182_116733157
64558	chr16	-	806	6	NNC	ENSMUSG00000022890.14	novel	742	6	NA	NA	-61	-5	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	2371.76142139128	802	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTTATCAAATGTCCTT	NA	False	NA	NA	False	NA	NA	NA	84631781	84624766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_84624884_84625312_84625438_84626436_84626682_84628216_84628396_84630707_84630763_84631696
64559	chr5	+	1540	1	NIC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	3	-6031	mono-exon	FALSE	NA	NA	NA	NA	NA	12	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTGTAATCTTAGATAC	759	False	NA	NA	False	NA	NA	NA	77099626	77101166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77099600_77101200
64560	chr1	-	1477	5	NNC	ENSMUSG00000026095.16	novel	1262	5	NA	NA	-86	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	251.232337687647	2	82	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGGGTGTAGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	53391815	53383802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53384045_53386739_53387718_53389145_53389222_53390038_53390093_53391688
64561	chr16	+	1488	8	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-14	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	217.077339739945	1	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTGTAAAATATTACACTA	NA	False	NA	NA	False	NA	NA	NA	48104135	48114574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48104205_48108240_48108359_48108984_48109070_48109401_48109569_48109690_48109742_48111376_48111688_48113287_48113449_48114048
64562	chr13	-	1199	2	Intergenic	novelGene_1395	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGAGGAGGCTGTTCG	NA	False	NA	NA	False	NA	NA	NA	62240939	62239381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_62239756_62240114
64565	chr1	+	764	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	124	-148	0	148	multi-exon	FALSE	canonical	3	1381	junction_1	89	4596	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGAGCCACTAGTTAGG	NA	False	NA	NA	False	NA	NA	NA	74324212	74326761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74324297_74325000_74325170_74326250
64566	chr1	+	581	1	Antisense	novelGene_ENSMUSG00000006301.18_AS_novelGene_ENSMUSG00000103013.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTAGTTGTGTCCCTCTGT	NA	False	NA	NA	False	NA	NA	NA	74326855	74327436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_74326900_74327400
64568	chr13	+	2189	11	NNC	ENSMUSG00000035910.16	novel	6634	10	NA	NA	1	436	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	7.00285656000464	30	12	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGTTTCAGAGATAATTT	NA	False	NA	NA	False	NA	NA	NA	25239987	25389954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_25240547_25245217_25245273_25286315_25286393_25286503_25286636_25291573_25291721_25294049_25294105_25303229_25303390_25349109_25349152_25371658_25371760_25386147_25386451_25389396
64569	chr11	-	1704	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	-9	-1110	-9	-60	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	1332	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGCAGTCTCTCTAGTA	NA	False	NA	NA	False	NA	NA	NA	51891598	51876383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
64570	chr8	-	2952	16	FSM	ENSMUSG00000051648.14	ENSMUST00000167294.8	2979	16	-15	42	-15	-42	multi-exon	FALSE	canonical	0	0	junction_12	1.01105005920687	8	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTATTTTTTATTATAAA	NA	False	NA	NA	False	NA	NA	NA	106140149	106109480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106109702_106111362_106111465_106111654_106111810_106111961_106112154_106113381_106114010_106114397_106114513_106114822_106114907_106115096_106115240_106115675_106115780_106116911_106117073_106118504_106118716_106120457_106120590_106121902_106122095_106122961_106123113_106134959_106135257_106140085
64571	chr6	+	1886	1	Intergenic	novelGene_4167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGCACTGGAGCCCATT	NA	False	NA	NA	False	NA	NA	NA	51891480	51893366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_51891500_51893400
64572	chr11	+	837	5	Antisense	novelGene_ENSMUSG00000020159.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_4	8.77496438739212	4	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGGATGAGCCTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	33484758	33517245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33484862_33490951_33491321_33505356_33505461_33509490_33509699_33517192
64574	chr8	+	1586	12	NNC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	3652	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	74.4068556336663	1	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTAGCTGTGATTTAA	NA	False	NA	NA	False	NA	NA	NA	46432266	46449894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46432333_46432911_46433041_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
64575	chr13	+	1578	1	FSM	ENSMUSG00000021458.18	ENSMUST00000221108.2	1599	1	10	11	10	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	156	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCTGCTCTCAGAAGCA	NA	False	NA	NA	False	NA	NA	NA	63449096	63450674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_63449100_63450700
64576	chr11	+	1169	6	Antisense	novelGene_ENSMUSG00000020802.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGGTACGGCCAACATGA	NA	False	NA	NA	False	NA	NA	NA	116430892	116434489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_116430961_116431911_116432050_116432164_116432865_116433616_116433707_116434233_116434363_116434445
64577	chr2	-	1756	12	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	-29	46493	-4	-20	5prime_fragment	FALSE	canonical	2	5	junction_4	7.6515001500003	4	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCAAAATTCAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	66086965	66061479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_66061763_66065386_66065588_66065916_66066015_66066564_66066758_66068130_66068230_66069866_66069952_66072974_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
64579	chr6	-	3431	10	FSM	ENSMUSG00000035357.18	ENSMUST00000075994.11	4104	10	662	11	107	-11	multi-exon	FALSE	canonical	3	11	junction_6	4.85340659285368	16	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGACCTGCTCTGACATG	NA	False	NA	NA	False	NA	NA	NA	101354196	101126580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_101129030_101130179_101130297_101131154_101131257_101132830_101132894_101133874_101133974_101146094_101146183_101149160_101149409_101331354_101331463_101339099_101339187_101354126
64580	chr14	+	524	5	NNC	ENSMUSG00000025290.18	novel	1613	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5247.91465131627	8	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTCTGCTCTGCTGCTTA	NA	False	NA	NA	False	NA	NA	NA	24540785	24545925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543567_24545834
64581	chr6	+	1319	10	FSM	ENSMUSG00000029762.7	ENSMUST00000038406.7	1358	10	27	12	27	-12	multi-exon	FALSE	canonical	2	5	junction_2	1.94999208608714	52	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATCCAACACGTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	34331080	34345386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34331232_34333190_34333359_34334395_34334513_34335065_34335144_34340266_34340390_34340656_34340764_34341171_34341254_34342141_34342226_34342837_34342921_34345060
64582	chr13	-	2599	1	Intergenic	novelGene_1508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGTTGTTTTGTGTCACG	NA	False	NA	NA	False	NA	NA	NA	97591366	97588767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_97588800_97591400
64583	chr1	-	923	6	FSM	ENSMUSG00000026095.16	ENSMUST00000123519.9	983	6	61	-1	61	1	multi-exon	TRUE	canonical	3	13	junction_2	221.433872747599	72	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGGGTGTAGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	53391850	53383802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_53384139_53385738_53385921_53387604_53387718_53389145_53389222_53390038_53390093_53391688
64584	chr2	+	1930	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110171.9	1938	3	8	0	8	0	multi-exon	FALSE	canonical	2	3	junction_2	6	38	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792789	131798050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131792836_131794928_131795503_131796740
64586	chr10	+	1582	4	ISM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	15392	9	-1022	-9	intron_retention	FALSE	canonical	3	216	junction_3	14.6590889515307	290	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAACAAAATAAATAATCTA	1052	False	NA	NA	False	NA	NA	NA	127494246	127496817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127494331_127494497_127494570_127495301_127495368_127495457
64588	chr16	-	919	5	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	167.537309277665	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	31918542	31903237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31918287
64589	chr17	+	1410	10	ISM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	62	18627	36	305	5prime_fragment	FALSE	canonical	3	427	junction_8	32.5932659863095	4	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTCATATCATAGGGAT	NA	False	NA	NA	False	NA	NA	NA	29879630	29906326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009
64590	chr8	-	1053	11	NIC	ENSMUSG00000031708.18	novel	1120	12	NA	NA	4	1	combination_of_known_splicesites	FALSE	canonical	3	36	junction_9	1190.40285617937	9	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAACTGACTGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	84321102	84298332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84301106_84301158_84320968
64591	chr3	-	1505	3	FSM	ENSMUSG00000001018.16	ENSMUST00000185005.2	1505	3	7	-7	7	7	multi-exon	FALSE	canonical	3	32	junction_2	341	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATTATGGTTTCA	NA	False	NA	NA	False	NA	NA	NA	90398293	90395669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90396901_90397460_90397580_90398138
64592	chr11	-	1576	2	FSM	ENSMUSG00000049892.8	ENSMUST00000062405.8	1611	2	29	6	29	-6	multi-exon	FALSE	canonical	3	6	junction_1	0	23	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAAATGGTGCTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	59855741	59854012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59855193_59855345
64593	chrX	-	790	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	8	0	intron_retention	FALSE	canonical	3	539	junction_4	46.7478341744299	275	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	20828248	20818161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
64594	chr7	+	878	7	NNC	ENSMUSG00000030983.5	novel	1244	7	NA	NA	-22	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	609.036237746892	1	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATGAATGAGATCATGGAA	1354	False	NA	-42	True	NA	NA	NA	133311108	133322559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318676_133319327_133319516_133320832_133321008_133322435
64595	chr9	-	2762	8	ISM	ENSMUSG00000002032.18	ENSMUST00000002100.8	2448	9	109	0	7	0	intron_retention	FALSE	canonical	3	7	junction_2	2.79941684889506	12	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAGTGTTTGTTCATT	8281	False	NA	NA	False	NA	NA	NA	44710495	44705072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960
64596	chr12	+	449	2	Genic_Genomic	ENSMUSG00000096942.2	novel	438	1	NA	NA	-35	48	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACCAACCCAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	110864512	110865033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_110864678_110864749
64599	chr4	-	2204	4	NNC	ENSMUSG00000086712.3	novel	2033	2	NA	NA	-57264	-10	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1.24721912892465	12	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCATTTAACCTGATCG	NA	False	NA	NA	False	NA	NA	NA	53327496	53261365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_53263235_53297133_53297206_53319146_53319316_53327402
64602	chr7	+	1388	9	Intergenic	novelGene_3036	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGGGGCCCCGCCTCCCTC	6687	False	NA	NA	False	NA	NA	NA	126630152	126641611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_126630275_126631805_126631937_126632053_126632215_126632339_126632549_126632630_126632862_126633087_126633198_126633288_126633426_126634920_126635112_126641515
64603	chr12	-	1827	1	FSM	ENSMUSG00000112008.2	ENSMUST00000218256.2	1319	1	-182	-326	-182	326	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTATTTTGTTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	76988749	76986922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_76986900_76988700
64605	chr13	-	2001	4	ISM	ENSMUSG00000021731.11	ENSMUST00000022245.10	3319	5	859	1731	288	-1731	3prime_fragment	FALSE	canonical	3	1748	junction_3	125.151463790436	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAACTACATTTGT	NA	False	NA	NA	False	NA	NA	NA	118522929	118516647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769
64606	chr6	+	1961	5	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	0	-2	intron_retention	FALSE	canonical	3	131	junction_3	8.25757228245687	5	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTGCTGTGTTTATTGT	7107	False	NA	NA	False	NA	NA	NA	125016798	125025963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125025201_125025330
64607	chr4	-	1148	1	FSM	ENSMUSG00000100863.2	ENSMUST00000122162.2	1009	1	59	-198	59	198	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAGAAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	91694733	91693585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91693600_91694700
64608	chr18	+	979	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	0	-19	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	169.713169789501	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATAAACTTTATTACCTA	NA	False	NA	NA	False	NA	NA	NA	67774670	67787213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_67774806_67777378_67777551_67781197_67781317_67781842_67782017_67786222_67786344_67786955
64609	chr4	-	975	7	NNC	ENSMUSG00000028563.17	novel	1027	7	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	529	junction_2	26.6958174002346	734	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	NA	False	NA	NA	NA	98271491	98243606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268925_98271302
64610	chr13	-	1877	8	FSM	ENSMUSG00000074768.7	ENSMUST00000099309.6	2490	8	378	235	-17	-235	multi-exon	FALSE	canonical	1	3	junction_5	5.15474815790535	26	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAAACCTTCAAGACAAT	NA	False	NA	NA	False	NA	NA	NA	93774091	93753417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_93754171_93756589_93756819_93757901_93758085_93761321_93761470_93761804_93761997_93763754_93763874_93769743_93769877_93773971
64611	chr10	+	1718	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	-79	26	7	-26	multi-exon	FALSE	canonical	3	53	junction_1	104.5	1081	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATATACAAAAGTAAACAG	NA	False	NA	NA	False	NA	NA	NA	86521395	86525792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_86521602_86521743_86521861_86524397
64612	chr11	+	1656	1	NIC	ENSMUSG00000020897.13	novel	1831	9	NA	NA	-554	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	NA	False	NA	NA	NA	68940834	68942490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68940800_68942500
64613	chr19	-	2084	2	FSM	ENSMUSG00000044390.6	ENSMUST00000236767.2	2155	2	66	5	24	-5	multi-exon	FALSE	canonical	2	7	junction_1	0	21	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAAGTCAGGATGTGGAG	8090	False	NA	NA	False	NA	NA	NA	5944111	5941175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5943146_5943997
64614	chr10	+	3209	1	Intergenic	novelGene_3444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCATGAACTCTACTCCA	973	False	NA	NA	False	NA	NA	NA	60004360	60007569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_60004400_60007600
64615	chr5	+	791	5	NIC	ENSMUSG00000060152.15	novel	1587	6	NA	NA	0	3	combination_of_known_junctions	TRUE	canonical	3	23	junction_3	341.157588219872	1268	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGCACTTGCCTTGAA	NA	False	NA	NA	False	NA	NA	NA	115376090	115379028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115376129_115376193_115376337_115378220_115378416_115378531_115378616_115378697
64616	chr2	-	1789	10	FSM	ENSMUSG00000027215.14	ENSMUST00000028644.11	1824	10	28	7	28	-2	multi-exon	TRUE	canonical	2	9	junction_8	1.4229164972073	97	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGATCCAGTCTGAAGA	NA	False	NA	NA	False	NA	NA	NA	93292819	93249462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93292674
64617	chr17	+	1341	12	FSM	ENSMUSG00000004864.14	ENSMUST00000233984.2	2937	12	61	1535	9	194	multi-exon	FALSE	canonical	3	65	junction_6	12.7227264607489	77	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGCTCAATGCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	28988331	28997672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995157_28995275_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
64618	chr2	-	859	5	NNC	ENSMUSG00000009549.15	novel	798	5	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	634.663099604822	912	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGGTGGTTTGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	118310144	118306331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_118306789_118307307_118307341_118309291_118309515_118309858_118309932_118310071
64619	chr19	+	1061	4	FSM	ENSMUSG00000024856.11	ENSMUST00000172914.2	1089	4	20	8	19	1	multi-exon	TRUE	canonical	3	90	junction_1	272.960721635102	92	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTCAGCCTTTCTGTGT	7115	False	NA	NA	False	NA	NA	NA	4147420	4149011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4147734_4147816_4147918_4148004_4148138_4148497
64620	chr19	-	2155	9	FSM	ENSMUSG00000024670.18	ENSMUST00000025572.8	2173	9	13	5	13	-2	multi-exon	TRUE	canonical	1	1	junction_4	1.11102430216445	11	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGAAAACTAGGCGTGT	8169	False	NA	NA	False	NA	NA	NA	10776095	10766714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10767608_10767932_10768035_10768279_10768535_10768745_10768818_10770191_10770309_10771505_10771602_10771927_10772069_10773689_10773753_10775679
64621	chr10	-	2207	6	ISM	ENSMUSG00000000731.16	ENSMUST00000131028.8	2966	14	5348	11	-2	-3	3prime_fragment	FALSE	canonical	2	9	junction_4	3.86781592116274	20	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGAGGTACACCTGGT	NA	False	NA	NA	False	NA	NA	NA	77874096	77865867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77871668_77872518_77872619_77873706
64622	chr3	-	3465	6	FSM	ENSMUSG00000032854.13	ENSMUST00000057944.12	3740	6	19	256	19	-21	multi-exon	FALSE	canonical	3	9	junction_2	3.44093010681705	15	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGTTGAAAATAGAGAA	NA	False	NA	NA	False	NA	NA	NA	125732249	125659175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_125661229_125665233_125665454_125667797_125667875_125669137_125669281_125708286_125709111_125732101
64623	chr2	+	2736	19	NIC	ENSMUSG00000027380.11	novel	531	6	NA	NA	-45	4	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	2.77999911182151	15	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACACAGGCGGAAATGAA	NA	False	NA	NA	False	NA	NA	NA	127680750	127965797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_127680903_127691112_127691210_127709202_127709287_127713181_127713269_127714029_127714129_127719663_127719779_127720676_127720764_127722345_127722419_127726325_127726459_127753349_127753385_127814451_127814569_127820592_127820747_127851996_127852087_127876732_127876843_127886263_127886376_127917766_127917855_127928278_127928350_127947596_127947699_127964867
64624	SIRV7	-	936	5	FSM	SIRV7A	SIRV706	949	5	13	0	13	0	multi-exon	FALSE	canonical	3	3147	junction_1	1522.61994601411	2	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147944	56031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_56098_70883_70988_78841_78964_114680_114989_147608
64625	chr8	-	1125	6	NNC	ENSMUSG00000000743.10	novel	2140	7	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	238.891942099352	32	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9766	False	NA	NA	False	NA	NA	NA	123939478	123931002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_123931564_123932959_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123939379
64626	chr5	-	1884	11	NNC	ENSMUSG00000006641.13	novel	3248	17	NA	NA	-31	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	48.9223875132848	15	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGACCTGGTGTCTGGC	772	False	NA	NA	False	NA	NA	NA	31205384	31193391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197136_31201904_31201936_31204973_31205141_31205309
64627	chr16	+	1195	8	ISM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	70	1444	6	-655	5prime_fragment	FALSE	canonical	3	143	junction_5	23.4259580423957	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGGGTCCCTTATGCTT	NA	False	NA	NA	False	NA	NA	NA	8455607	8473951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414
64628	chr1	+	1276	8	ISM	ENSMUSG00000046101.17	ENSMUST00000125294.9	2003	14	6853	8289	4207	-8289	internal_fragment	FALSE	canonical	3	7	junction_7	6.77028320632731	6	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGAAGACTTTGAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	9985745	10002388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9994281_9994488_10001005_10001173_10002226
64630	chr12	-	1317	1	Antisense	novelGene_ENSMUSG00000034501.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGGGCGTCCTGGGACCA	NA	False	NA	NA	False	NA	NA	NA	72584603	72583286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_72583300_72584600
64631	chr17	-	594	4	FSM	ENSMUSG00000024067.15	ENSMUST00000233187.2	512	4	-78	-4	-9	2	multi-exon	FALSE	canonical	3	85	junction_1	1032.98047738893	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATAGTTGTTGTATATG	NA	False	NA	NA	False	NA	NA	NA	74623467	74606474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_74606820_74622896_74622945_74623038_74623112_74623339
64632	chr7	-	920	6	ISM	ENSMUSG00000064179.14	ENSMUST00000166161.8	750	12	4465	-172	35	-13	3prime_fragment	TRUE	canonical	3	28	junction_3	11.499565209172	60	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTCAAGTTCATGACTG	9920	False	NA	NA	False	NA	NA	NA	4512902	4507581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556
64634	chr4	-	1963	2	ISM	ENSMUSG00000028749.8	ENSMUST00000030526.7	2465	5	4265	27	4265	-27	3prime_fragment	FALSE	canonical	2	3	junction_1	0	11	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAAACCCTCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	138480672	138477870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_138479735_138480573
64635	chr2	-	2128	11	FSM	ENSMUSG00000026875.15	ENSMUST00000113064.8	2325	11	184	13	-3	-13	multi-exon	FALSE	canonical	1	1	junction_10	3.16385840391127	33	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTGAATTGCAAGCTTC	NA	False	NA	NA	False	NA	NA	NA	34851600	34833282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34834104_34835409_34835559_34836693_34836872_34838152_34838564_34839050_34839117_34846207_34846293_34847970_34848119_34848524_34848624_34849486_34849526_34850832_34850900_34851535
64636	chr15	+	2221	17	ISM	ENSMUSG00000068117.11	ENSMUST00000188048.7	3197	25	11498	-4	10811	1	3prime_fragment	TRUE	canonical	0	0	junction_4	1.49478259288767	6	31	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTGCACTTTCACT	5802	False	NA	NA	False	NA	NA	NA	81978174	82011016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81978210_81980070_81980132_81982201_81982300_81985148_81985318_81985628_81985777_81987340_81987617_81991230_81991397_81993739_81993839_81996644_81996756_81997048_81997213_81999639_81999722_81999883_82000060_82007622_82007705_82008098_82008206_82009050_82009183_82009353_82009467_82010814
64637	chrX	+	1377	3	FSM	ENSMUSG00000086316.9	ENSMUST00000149514.8	775	3	0	-602	0	602	multi-exon	FALSE	canonical	3	163	junction_1	3	56	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCAGTAAGGATAAACTGT	NA	False	NA	NA	False	NA	NA	NA	152506622	152512786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_152506934_152508700_152508838_152511857
64638	chr1	+	1795	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	6	0	intron_retention	FALSE	canonical	3	82	junction_1	58.385869199852	540	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	NA	False	NA	NA	NA	75412617	75419817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
64639	chr11	+	1211	6	FSM	ENSMUSG00000078656.12	ENSMUST00000100414.12	1220	6	6	3	0	-3	multi-exon	FALSE	canonical	3	11	junction_5	486.921595331322	83	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACTGTCGGCCTGTTACT	NA	False	NA	NA	False	NA	NA	NA	101144560	101150368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149595
64640	chr11	+	1015	2	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	0	-17547	intron_retention	FALSE	canonical	3	1774	junction_1	0	11	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAAATCTTCCTATTTAT	9431	False	NA	NA	False	NA	NA	NA	88861077	88864233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88861306_88863446
64642	chr1	-	1685	2	ISM	ENSMUSG00000006538.13	ENSMUST00000164097.4	2468	3	3110	7	2880	-7	3prime_fragment	FALSE	canonical	0	0	junction_1	0	3	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAGAACCCTGGAATCCAA	NA	False	NA	NA	False	NA	NA	NA	74987721	74984480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_74985907_74987462
64643	chr4	+	2584	12	ISM	ENSMUSG00000028874.15	ENSMUST00000138179.8	2398	13	7035	-532	7035	532	3prime_fragment	FALSE	canonical	1	1	junction_1	3.29788311767583	19	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATCACAGGCACACTGG	1508	False	NA	NA	False	NA	NA	NA	132711461	132728610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_132711526_132713463_132713664_132714499_132714603_132715993_132716093_132721957_132722062_132722228_132722379_132724431_132724588_132724702_132724883_132725278_132725356_132725651_132725806_132727218_132727351_132727445
64644	chr2	-	697	5	NNC	ENSMUSG00000018770.10	novel	714	5	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	1844.06214306894	3	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAATTCTTGCTGTGATT	NA	False	NA	NA	False	NA	NA	NA	73741635	73738796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739076_73739527_73739722_73740207_73740286_73741298_73741405_73741595
64645	chr7	+	1325	5	NIC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	51	-23	intron_retention	FALSE	canonical	3	304	junction_1	30.878795313289	34	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAATAAATTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	139616375	139620489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_139616520_139616732_139617335_139617428_139617554_139619238_139619359_139620155
64646	chr2	-	1338	3	ISM	ENSMUSG00000013523.14	ENSMUST00000133673.8	688	4	809	-795	809	-2	3prime_fragment	FALSE	canonical	3	7	junction_2	35	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAATACTTGAGGTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	170198224	170189069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_170190069_170191101_170191384_170198167
64647	chr19	-	1701	9	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19152	0	intron_retention	FALSE	canonical	2	3	junction_2	24.5811792841597	13	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	2539	False	NA	NA	False	NA	NA	NA	42295545	42271970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_42272706_42275611_42275715_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
64648	chr17	-	795	4	NIC	ENSMUSG00000092203.8	novel	579	5	NA	NA	-1	0	intron_retention	FALSE	canonical	3	94	junction_3	41.9947086613963	321	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6006	False	NA	NA	False	NA	NA	NA	35171448	35169216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35169452_35169673_35169824_35170860_35171150_35171327
64649	chr11	+	1077	6	NIC	ENSMUSG00000020514.9	novel	722	7	NA	NA	6	472	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	509.607927724834	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTAAACTTTAAGGGTCA	1487	False	NA	NA	False	NA	NA	NA	58062492	58068582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58062540_58062619_58062848_58063858_58063977_58066102_58066169_58066957_58067036_58068042
64650	chr3	+	1294	1	NIC	ENSMUSG00000054091.10	novel	1160	2	NA	NA	240	-448	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122718091	122719385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_122718100_122719400
64652	chr17	-	839	5	NNC	ENSMUSG00000073406.11	novel	1138	6	NA	NA	-25	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.517820009828	13	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTGATTAGTGGAGTGAC	NA	False	NA	NA	False	NA	NA	NA	36395140	36391076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36391156_36392284_36392410_36394124_36394401_36394587_36394858_36395051
64653	chr12	+	1289	8	NNC	ENSMUSG00000021286.9	novel	541	2	NA	NA	2447	2	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	318.394505644318	21	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGTGTATAATTAAAACT	3375	False	NA	NA	False	NA	NA	NA	111785136	111794787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111785305_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792012_111792067_111793976_111794120_111794251
64654	chr7	-	1074	6	NNC	ENSMUSG00000001827.13	novel	1307	7	NA	NA	17	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	150.388031438675	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACATGTGCCTTATGAAT	2938	False	NA	NA	False	NA	NA	NA	101518512	101507559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513270_101517604_101517675_101518363
64655	chr15	-	491	2	ISM	ENSMUSG00000063765.13	ENSMUST00000072910.6	2548	6	3315	6937	56	1022	internal_fragment	FALSE	canonical	3	19	junction_1	0	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCACAAGAATCAACTTCAG	8310	False	NA	NA	False	NA	NA	NA	81578173	81577302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_81577355_81577734
64656	chr17	+	1046	8	ISM	ENSMUSG00000071037.7	ENSMUST00000095188.7	1595	11	301021	-1	299490	1	3prime_fragment	TRUE	canonical	3	62	junction_3	5.28764443523479	89	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTGTTTCAATCTATCG	7751	False	NA	NA	False	NA	NA	NA	85699000	85766017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_85699062_85700885_85700941_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
64657	chr1	+	1683	3	Antisense	novelGene_ENSMUSG00000099860.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	0	89	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTGGGGGTGAGGAGAT	NA	False	NA	NA	False	NA	NA	NA	119233295	119248363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_119233438_119234108_119234328_119247041
64658	chr7	-	1936	1	ISM	ENSMUSG00000048528.8	ENSMUST00000054562.4	3264	2	2790	34	2790	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	3	44	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGTGGCCTAATAAATT	NA	False	NA	NA	False	NA	NA	NA	132198576	132196640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_132196600_132198600
64660	chr15	-	2007	20	FSM	ENSMUSG00000015377.11	ENSMUST00000078953.9	4585	20	-26	2604	-9	0	multi-exon	FALSE	canonical	3	25	junction_9	20.4859251730037	69	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTCTGGTCCCTGACT	NA	False	NA	NA	False	NA	NA	NA	89080677	89069019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071254_89071350_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
64661	chr6	-	474	1	ISM	ENSMUSG00000030101.16	ENSMUST00000032191.16	2593	9	77874	207	19355	-207	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATAGTCTGAGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	108084669	108084195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_108084200_108084700
64662	chr7	-	1221	7	NNC	ENSMUSG00000006313.6	novel	1421	8	NA	NA	2896	7	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_6	11.4661337085446	189	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGAGCTTGTTCTGTTCT	4803	False	NA	NA	False	NA	NA	NA	30309376	30302509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299_30306408_30306555_30306631_30309038_30309240_30309361
64663	chr11	+	1136	8	NNC	ENSMUSG00000020407.14	novel	518	6	NA	NA	-16	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1240.19223328894	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATTTTTTCATAACACA	NA	False	NA	NA	False	NA	NA	NA	9068770	9086150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068868_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081840_9084699_9084932_9085163_9085311_9085960
64664	chr4	+	799	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	140	4	103	-1	multi-exon	FALSE	canonical	3	289	junction_1	0	43	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACGTCTGTGCCTGATGC	NA	False	NA	NA	False	NA	NA	NA	125990555	125992373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_125990603_125991621
64665	chr8	-	451	2	Genic_Genomic	ENSMUSG00000057657.5	novel	456	1	NA	NA	-32	56	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAATCTAAAGAACATTG	NA	False	NA	NA	False	NA	NA	NA	107989912	107989368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_107989709_107989801
64667	chr5	+	1353	9	NIC	ENSMUSG00000029130.13	novel	1565	10	NA	NA	4	-40	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	16.597721982248	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTCTTTATTGCATTA	NA	False	NA	NA	False	NA	NA	NA	29401007	29430439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_29401083_29401577_29401644_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411693_29411803_29429114_29429283_29430040
64669	chr10	+	1893	4	NNC	ENSMUSG00000073427.5	novel	3330	4	NA	NA	-10023	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	64.0433880705538	1	108	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTTACAAGTGAAACTGAT	NA	False	NA	NA	False	NA	NA	NA	82204403	82215458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_82204532_82204731_82204793_82212394_82213945_82215304
64670	chr12	+	680	5	NNC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	69	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1229.60387422129	65	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGCATGCATTTCTTA	NA	False	NA	NA	False	NA	NA	NA	87313552	87320745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87313624_87319400_87319475_87319896_87319999_87320220_87320273_87320364
64671	chr9	+	1862	2	Antisense	novelGene_ENSMUSG00000103968.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCCTGGGAACCGAGCT	NA	False	NA	NA	False	NA	NA	NA	118232151	118235227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_118233892_118235105
64674	chr5	+	1954	11	NNC	ENSMUSG00000056367.15	novel	2031	11	NA	NA	7636	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.34914402913	2	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTTTATAACTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	25972672	26055677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_25972737_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
64675	chr5	-	992	5	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	2251	5	-212	-1	3prime_fragment	FALSE	canonical	1	50	junction_4	239.958720408324	1151	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAATGCGGCCAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	109704551	109702579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285
64676	chr7	+	1838	12	NIC	ENSMUSG00000035704.18	novel	2039	13	NA	NA	20	-26	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	49.7230345543115	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAAAGTGTTTTGGGTCC	NA	False	NA	NA	False	NA	NA	NA	97020832	97041366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97036008_97036149_97037689_97037796_97039448_97039547_97040095_97040169_97040734
64677	chr9	+	979	1	Antisense	novelGene_ENSMUSG00000058444.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAACCCCCACGATGCCT	NA	False	NA	NA	False	NA	NA	NA	63124407	63125386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_63124400_63125400
64678	chr4	+	987	8	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	0	365	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	1078.45649340308	1	29	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTTGGGTTAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	118478044	118483180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480503_118480585_118480807_118480870_118482733_118482883_118483016
64679	chr17	-	798	2	FSM	ENSMUSG00000079471.5	ENSMUST00000208801.2	437	2	21	-382	17	0	multi-exon	FALSE	canonical	3	33	junction_1	0	426	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	45912875	45911896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45912612_45912792
64680	chr6	-	684	1	NIC	ENSMUSG00000053768.14	novel	477	5	NA	NA	11078	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAAGACTGGCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	32769849	32769165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_32769200_32769800
64681	chr4	+	1759	10	Antisense	novelGene_ENSMUSG00000025330.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCACTCAGGTGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	140483188	140501598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_140483789_140484808_140484924_140485131_140485236_140485331_140485511_140487247_140487375_140488911_140489030_140490705_140490774_140492881_140492947_140496619_140496805_140501400
64682	chr12	+	617	5	NNC	ENSMUSG00000017843.15	novel	2367	12	NA	NA	-58	-5259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	387.243059976548	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGCCTGCGTGCTTACAT	4983	False	NA	NA	False	NA	NA	NA	110452234	110512285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512224
64683	chr2	+	972	7	NNC	ENSMUSG00000017723.12	novel	849	5	NA	NA	-770	-30	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	236.894960314107	23	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCGCTTTCAGCAATGGA	352	False	NA	NA	False	NA	NA	NA	164403562	164410400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164403695_164403888_164404043_164404631_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
64686	chr16	+	2717	16	ISM	ENSMUSG00000118672.1	ENSMUST00000239554.1	12361	25	31518	-153	-10124	-5	3prime_fragment	FALSE	canonical	1	1	junction_1	0.928559218478941	8	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAAATAAAGTCTCTAT	NA	False	NA	NA	False	NA	NA	NA	32586532	32602749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_32586577_32587258_32587379_32587677_32587890_32589064_32589150_32589512_32589681_32590125_32590228_32590578_32590813_32591948_32592087_32595108_32595291_32596128_32596289_32597160_32597335_32598029_32598104_32599122_32599194_32599272_32599509_32601167_32601331_32602195
64687	chr1	-	1558	7	NNC	ENSMUSG00000026193.16	novel	4022	17	NA	NA	2922	-13	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_5	1020.66798660921	1	97	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGATTTACATTCCATGA	6496	False	NA	NA	False	NA	NA	NA	71636605	71624697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632391_71634822_71634962_71636439
64689	chr3	-	1473	5	FSM	ENSMUSG00000027954.10	ENSMUST00000029566.9	1480	5	3	4	-1	-1	multi-exon	FALSE	canonical	3	14	junction_2	2.77263412660235	69	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATGCTTTTCTGCCCCAC	1669	False	NA	NA	False	NA	NA	NA	89186949	89179043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89186757
64690	chr11	-	2463	1	Intergenic	novelGene_2383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTGATGGCCACCAACAG	NA	False	NA	NA	False	NA	NA	NA	64912299	64909836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_64909800_64912300
64691	chr10	+	1569	1	FSM	ENSMUSG00000073427.5	ENSMUST00000165906.2	2645	1	-520	1596	-520	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	76	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTATGTTGTCATCCA	NA	False	NA	NA	False	NA	NA	NA	82213906	82215475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_82213900_82215500
64692	chr12	+	1776	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	-8	9	-8	-9	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	136	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCACTGAGCCACCGAGA	NA	False	NA	NA	False	NA	NA	NA	112586470	112607764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
64693	chr10	-	1643	6	FSM	ENSMUSG00000052151.13	ENSMUST00000063879.13	1654	6	9	2	5	-2	multi-exon	FALSE	canonical	3	49	junction_5	6.89927532426414	206	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGCATGTTGATTTTTC	NA	False	NA	NA	False	NA	NA	NA	79369621	79362265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369457
64694	chr1	+	1111	2	ISM	ENSMUSG00000026269.15	ENSMUST00000179127.8	1844	7	2432	4	-391	-4	3prime_fragment	FALSE	canonical	3	57	junction_1	0	49	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGATCTGACCTCCCTT	NA	False	NA	NA	False	NA	NA	NA	92846944	92848290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_92847049_92847283
64695	chr10	-	2347	4	NNC	ENSMUSG00000038522.8	novel	2677	4	NA	NA	15329	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.471404520791032	4	22	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATATTGGGACAAAGCTA	8268	False	NA	NA	False	NA	NA	NA	39885826	39877586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_39879586_39881973_39882091_39883255_39883425_39885764
64696	chr7	-	1031	2	Intergenic	novelGene_2922	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAATGAAAGAATCTAGTG	3031	False	NA	NA	False	NA	NA	NA	30532056	30530790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_30531171_30531405
64698	chr15	+	580	1	Intergenic	novelGene_3339	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACTTGTTCACCGAGACC	NA	False	NA	NA	False	NA	NA	NA	85519081	85519661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_85519100_85519700
64699	chr19	-	818	2	ISM	ENSMUSG00000024777.11	ENSMUST00000025695.10	2742	14	19	6859	-10	-687	5prime_fragment	TRUE	canonical	3	104	junction_1	0	2	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGTTGCCAGGGTACCC	NA	False	NA	NA	False	NA	NA	NA	6285883	6284653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6285130_6285541
64700	chr19	-	1426	9	ISM	ENSMUSG00000024777.11	ENSMUST00000025695.10	2742	14	3568	0	-1825	0	3prime_fragment	FALSE	canonical	3	84	junction_4	14.1840579525043	36	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTTGCTTTATTGAG	NA	False	NA	NA	False	NA	NA	NA	6282334	6277794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299
64701	chr17	+	1883	2	NNC	ENSMUSG00000039518.8	novel	2678	2	NA	NA	2857	-270	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	24	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGACTATTTGCCTTCTT	66	False	NA	NA	False	NA	NA	NA	35865881	35867807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35865951_35865993
64702	chr11	-	1174	10	NNC	ENSMUSG00000018677.10	novel	1564	11	NA	NA	18	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1975.71712875085	7	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGTCTTCTGTGCACAG	7304	False	NA	NA	False	NA	NA	NA	102298754	102293986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102294194_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298603
64703	chr9	-	2289	16	ISM	ENSMUSG00000032064.18	ENSMUST00000117646.8	5719	20	70	18835	-22	-4887	5prime_fragment	FALSE	canonical	3	25	junction_3	7.76316086827181	17	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATAGCTAACTCTTGATA	NA	False	NA	NA	False	NA	NA	NA	50639297	50592890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_50593501_50593836_50593927_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
64705	chr14	-	1728	1	NIC	ENSMUSG00000021773.12	novel	2314	7	NA	NA	10	-218	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGTGCCCACTTTCTCC	NA	False	NA	NA	False	NA	NA	NA	21897868	21896140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_21896100_21897900
64706	chr2	+	2529	3	Intergenic	novelGene_2634	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGTTAGAAAAGCCTTAG	NA	False	NA	NA	False	NA	NA	NA	59829599	59880985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_59831903_59836387_59836534_59880905
64707	chr18	+	764	5	NIC	ENSMUSG00000057130.13	novel	517	4	NA	NA	104	177	combination_of_known_splicesites	FALSE	canonical	3	221	junction_1	896.575254789022	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGGGAGCAGTGGGGATC	NA	False	NA	NA	False	NA	NA	NA	80250212	80265730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_80250277_80250368_80250559_80253276_80253346_80261918_80262023_80265393
64708	chr12	+	834	9	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	10031	35230	-2849	-495	internal_fragment	FALSE	canonical	0	0	junction_2	0.433012701892219	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGAAGAGGAAGGCGAAG	3798	False	NA	NA	False	NA	NA	NA	105682265	105713476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_105682339_105692445_105692557_105699691_105699773_105701148_105701238_105704832_105704924_105707267_105707346_105708494_105708645_105711462_105711592_105713444
64710	chr9	-	2413	16	FSM	ENSMUSG00000010064.16	ENSMUST00000193932.6	2463	16	56	-6	4	0	multi-exon	FALSE	canonical	0	0	junction_10	1.9731531449265	15	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGATTGTGTTCTATATTCT	9835	False	NA	NA	False	NA	NA	NA	107544569	107528353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107529238_107529327_107529432_107532221_107532367_107532454_107532580_107532783_107532885_107533133_107533214_107533298_107533470_107533654_107533714_107533793_107533877_107534828_107534911_107535008_107535102_107535192_107535267_107535835_107535952_107536130_107536210_107536293_107536444_107544502
64711	chr19	-	502	2	Intergenic	novelGene_1230	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTGTCTTTGTGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	23003696	23002437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_23002874_23003630
64712	chr4	-	2006	4	NNC	ENSMUSG00000035201.16	novel	1976	4	NA	NA	-29483	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.09120616516523	37	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTACTCTTTACTTCTC	NA	False	NA	NA	False	NA	NA	NA	101730703	101692161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101693139_101694021_101694595_101695022_101695337_101730561
64713	chr17	-	758	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173811.8	747	4	-12	1	0	0	multi-exon	FALSE	canonical	3	110	junction_2	36.5908306668336	265	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6010	False	NA	NA	False	NA	NA	NA	35171444	35169217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111
64717	chr19	-	3280	10	Genic_Genomic	ENSMUSG00000114721.2	novel	694	2	NA	NA	-27325	-7725	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACCCTCGTTGTTCACT	NA	False	NA	NA	False	NA	NA	NA	43485522	43453607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_43453704_43456679_43456818_43458044_43458215_43460284_43460383_43460810_43460864_43473283_43473446_43479857_43480044_43480202_43480350_43482145_43482251_43483397
64718	chr12	-	1473	6	FSM	ENSMUSG00000046314.17	ENSMUST00000053768.14	4553	6	344	2736	-47	-2732	multi-exon	FALSE	canonical	0	0	junction_4	7.73563184232549	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTAGTCCTCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	45121148	44902002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_44902661_44908007_44908166_44948656_44948823_44949642_44949774_45066249_45066439_45120977
64720	chr10	+	912	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	-26	4	-26	-4	multi-exon	FALSE	canonical	0	0	junction_1	321.555593949165	51	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCCTCTCACTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	127126616	127132153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
64722	chr7	+	1269	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	41	3646	17	198	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	7	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGTTATGAAGTAGCAACA	NA	False	NA	NA	False	NA	NA	NA	78545715	78557311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
64724	chr5	-	1122	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.456197445006	130	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9978	False	NA	NA	False	NA	NA	NA	137598960	137594906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
64725	chr8	+	3007	4	FSM	ENSMUSG00000031767.14	ENSMUST00000073521.12	3543	4	84	452	0	-452	multi-exon	FALSE	canonical	2	2	junction_3	2.05480466765633	68	61	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGACACTTGTTTGCAAT	NA	False	NA	NA	False	NA	NA	NA	114860380	114881027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_114860441_114863077_114863232_114874634_114874794_114878393
64726	chr17	+	1686	13	ISM	ENSMUSG00000055817.19	ENSMUST00000112352.10	2674	16	8449	5113	8421	70	internal_fragment	FALSE	canonical	3	44	junction_12	304.627048846436	1	56	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTTGTTGAATTAAA	NA	False	NA	NA	False	NA	NA	NA	84022040	84107739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478
64727	chr11	+	1359	2	FSM	ENSMUSG00000034936.3	ENSMUST00000039388.3	1382	2	20	3	20	-3	multi-exon	FALSE	canonical	3	45	junction_1	0	131	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGTTTTGATCTGGTA	2570	False	NA	NA	False	NA	NA	NA	101556386	101558655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101556464_101557373
64728	chr11	+	1031	2	FSM	ENSMUSG00000018923.14	ENSMUST00000152348.2	870	2	6	-167	6	4	multi-exon	FALSE	canonical	3	117	junction_1	0	337	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTCTCTCTCTCGCTCTC	NA	False	NA	NA	False	NA	NA	NA	70342763	70344557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70343165_70343927
64731	chr18	-	2350	11	NIC	ENSMUSG00000117679.2	novel	2258	12	NA	NA	50	0	intron_retention	FALSE	canonical	3	9	junction_6	18.2931681236466	25	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGATGAGTATATTGA	NA	False	NA	NA	False	NA	NA	NA	36812319	36804207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36810049_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
64732	chr14	+	1246	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	128	-2	-124	2	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	89	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGCTTGTCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	51193576	51202208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
64733	chr10	+	595	4	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	3704	15	-1834	5prime_fragment	FALSE	canonical	3	6189	junction_1	315.456283289249	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTCTACCAGACCTTC	2196	False	NA	NA	False	NA	NA	NA	81012479	81014628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514
64734	chr14	+	1413	2	FSM	ENSMUSG00000021876.16	ENSMUST00000022428.13	1518	2	101	4	101	-4	multi-exon	FALSE	canonical	2	4	junction_1	0	37	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCTGTGTCGGGATTTG	NA	False	NA	NA	False	NA	NA	NA	51328634	51343600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_51328711_51342263
64735	chr4	+	1780	1	Intergenic	novelGene_1940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGCACCAGTTCCCCAGGA	NA	False	NA	NA	False	NA	NA	NA	123499366	123501146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_123499400_123501100
64736	chr11	+	2132	1	FSM	ENSMUSG00000048878.7	ENSMUST00000053063.7	3495	1	4	1359	4	-1359	mono-exon	FALSE	NA	NA	NA	NA	NA	114	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATGTAACAGTTTCAG	NA	False	NA	NA	False	NA	NA	NA	103007060	103009192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_103007100_103009200
64737	chr11	+	2200	18	ISM	ENSMUSG00000059439.16	ENSMUST00000092821.10	2769	24	17848	241364	17848	-19058	internal_fragment	FALSE	canonical	3	82	junction_12	13.5840329636339	1	121	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCAGGTAGGATGCTTA	NA	False	NA	NA	False	NA	NA	NA	85261885	85474812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253_85400519_85422618_85422770_85445015_85445141_85448148_85448315_85449896_85449998_85467607_85467709_85471867_85472065_85474722
64738	chr2	-	622	1	NIC	ENSMUSG00000027238.18	novel	3354	13	NA	NA	2421	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACTGATGATTGCAGTAG	1556	False	NA	NA	False	NA	NA	NA	121379411	121378789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_121378800_121379400
64744	chr5	+	2099	1	NIC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	2311	-615	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGCCCCCCTGCACCCT	NA	False	NA	NA	False	NA	NA	NA	137022788	137024887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_137022800_137024900
64746	chr17	-	723	4	NNC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	20	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1036.58316919901	29	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCCGGATTTCTGGTTT	3424	False	NA	NA	False	NA	NA	NA	71297505	71281027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71281492_71282453_71282549_71284115_71284242_71297467
64747	chr2	-	2112	13	FSM	ENSMUSG00000056486.19	ENSMUST00000112024.10	4050	13	255	1683	-24	-7	multi-exon	FALSE	canonical	1	103	junction_1	53.6273147648555	129	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAAAACACTAATAGCTTT	NA	False	NA	NA	False	NA	NA	NA	73605435	73442686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73490023_73490102_73509958_73510248_73537262_73537377_73540798_73540831_73546707_73546764_73551746_73551786_73605366
64750	chr9	+	638	4	NNC	ENSMUSG00000032518.7	novel	1101	7	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2427.39407595883	1075	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956706	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957675_119960095_119960232_119960465
64751	chr7	+	695	6	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_3	6942.55032678914	27	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12657009_12659318_12659529_12659701_12659793_12660322_12660422_12660498
64753	chr17	+	1710	5	NIC	ENSMUSG00000040482.17	novel	1519	7	NA	NA	-11	-7	intron_retention	FALSE	canonical	3	143	junction_1	18.8547076349648	153	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGGGTCTCTTGCTGTGT	3028	False	NA	NA	False	NA	NA	NA	35056046	35058155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
64754	chr13	-	1970	5	NNC	ENSMUSG00000074824.4	novel	2981	7	NA	NA	5471	4522	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	3.34477204006491	11	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAATAAACAATAT	NA	False	NA	NA	False	NA	NA	NA	67256621	67240154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67240584_67245856_67247112_67250106_67250200_67250761_67250846_67256512
64755	chr16	-	2276	2	ISM	ENSMUSG00000097313.3	ENSMUST00000232297.2	699	4	-193	29524	45	7332	5prime_fragment	FALSE	canonical	3	93	junction_1	0	212	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTACGTTGTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	29765527	29755865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_29757886_29765271
64756	chr12	+	1222	7	NNC	ENSMUSG00000021286.9	novel	541	2	NA	NA	2490	-3	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	278.162871953346	19	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACACAGCAGGCTCTGGCC	3418	False	NA	NA	False	NA	NA	NA	111785179	111794817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111785305_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
64758	chr15	+	424	2	Genic_Genomic	ENSMUSG00000078300.4	novel	1002	1	NA	NA	-74	183	multi-exon	FALSE	non_canonical	0	0	junction_1	0	503	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	88	False	NA	NA	False	NA	NA	NA	12574900	12576159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_12575220_12576054
64760	chr8	+	655	3	ISM	ENSMUSG00000031697.13	ENSMUST00000210146.2	1041	6	3464	-3	-2671	2	3prime_fragment	FALSE	canonical	2	5	junction_1	494	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATGTGTATGAGTATTT	NA	False	NA	NA	False	NA	NA	NA	86030015	86034702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_86030081_86032845_86032948_86034214
64761	chr11	-	1133	2	Intergenic	novelGene_2198	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	15	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATCCTCTGCCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	4644785	4640524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_4641526_4644653
64762	chr4	+	2466	2	ISM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	32155	27	-3927	-27	intron_retention	FALSE	canonical	3	341	junction_1	0	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATATAAACCTTGTCGGA	NA	False	NA	NA	False	NA	NA	NA	83368115	83371550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_83368473_83369441
64763	chr7	+	991	2	ISM	ENSMUSG00000074365.14	ENSMUST00000171280.3	571	3	2	270	2	-172	intron_retention	FALSE	canonical	3	864	junction_1	0	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGCTACTACAGGGATTG	NA	False	NA	NA	False	NA	NA	NA	15635572	15637675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_15635663_15636774
64764	chr4	-	1688	11	FSM	ENSMUSG00000028294.16	ENSMUST00000108136.8	1688	11	-4	4	-4	-4	multi-exon	FALSE	canonical	2	4	junction_2	1.88679622641132	24	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTGTTTACTGTGTATT	12	True	NA	NA	False	NA	NA	NA	34730182	34711335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
64766	chr1	+	2160	8	ISM	ENSMUSG00000041757.18	ENSMUST00000038295.15	7388	27	12905	28517	2	2584	intron_retention	FALSE	canonical	2	5	junction_5	7.64786217961381	1	65	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCCTGCATCCACCCAAG	5376	False	NA	NA	False	NA	NA	NA	133186748	133202656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_133186828_133187779_133187895_133191534_133191640_133192398_133192472_133194303_133194405_133197797_133197941_133199946_133200430_133201595
64768	chr18	+	1061	8	Antisense	novelGene_ENSMUSG00000024583.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAGCCCGGCAGGGCGGC	NA	False	NA	NA	False	NA	NA	NA	63797178	63825250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_63797402_63804650_63804758_63807119_63807291_63808512_63808587_63809951_63810064_63812422_63812605_63815291_63815381_63825147
64769	chr8	+	989	4	Antisense	novelGene_ENSMUSG00000014846.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGCAGCCCGGGCGGCT	NA	False	NA	NA	False	NA	NA	NA	106194123	106198019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_106194657_106194787_106194941_106195070_106195265_106197910
64771	chrX	-	2520	1	NIC	ENSMUSG00000031422.17	novel	1996	4	NA	NA	30	-3129	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAGCGACATTTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	135641995	135639475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_135639500_135642000
64772	chr5	+	2654	12	ISM	ENSMUSG00000061576.16	ENSMUST00000101471.4	4491	26	-42	72593	-42	-42118	5prime_fragment	TRUE	canonical	2	6	junction_2	2.97926720148617	14	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAATCCAGGCATTTGT	NA	False	NA	NA	False	NA	NA	NA	27466930	27859905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_27467360_27587752_27587868_27603911_27604011_27656185_27656281_27674408_27674484_27742979_27743033_27762549_27762632_27803799_27803921_27836376_27836532_27839506_27839605_27857174_27857299_27858697
64773	chr5	+	2244	2	Antisense	novelGene_ENSMUSG00000097640.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	21	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTTGTTCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	64955289	64959716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_64955374_64957556
64774	chr11	+	1350	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	4	820	4	-820	multi-exon	FALSE	canonical	3	156	junction_1	58.9736287580211	2	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATAACCCTGTCACTTC	NA	False	NA	NA	False	NA	NA	NA	62349289	62404423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
64775	chr15	+	1706	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109967.10	1703	4	-15	12	6	0	multi-exon	FALSE	canonical	1	1	junction_1	16.779617264871	168	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAACTCAATGGGAGAA	NA	False	NA	NA	False	NA	NA	NA	75841012	75847583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_75841254_75844971_75845058_75845390_75845505_75846318
64776	chr19	-	2170	1	Antisense	novelGene_ENSMUSG00000033768.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	74	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAAAACCAGTGCCCT	NA	False	NA	NA	False	NA	NA	NA	6560463	6558293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_6558300_6560500
64777	chr9	+	2246	8	NNC	ENSMUSG00000032202.12	novel	3168	7	NA	NA	18732	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5.46976849116476	26	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTCCAGTATATCAAGTT	757	False	NA	NA	False	NA	NA	NA	72970997	73004894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72971042_72971566_72971674_72982674_72982850_72989683_72989770_72992212_72992317_72994358_72994483_73002539_73003800_73004548
64780	chr19	-	1827	9	ISM	ENSMUSG00000056917.14	ENSMUST00000236006.2	3513	16	6574	11	-224	5	3prime_fragment	TRUE	canonical	3	60	junction_4	8.95038406997152	80	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGCAAACAACTCTAT	NA	False	NA	NA	False	NA	NA	NA	5705089	5701229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574
64785	chr5	-	721	6	ISM	ENSMUSG00000050050.18	ENSMUST00000150359.2	3353	10	19	10062	13	-10062	5prime_fragment	FALSE	canonical	1	1	junction_2	1.78885438199983	1	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAGTCATGAAGGCGTG	NA	False	NA	NA	False	NA	NA	NA	92823111	92809974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_92810112_92810491_92810602_92814539_92814758_92816530_92816668_92820531_92820576_92823036
64786	chr5	-	762	5	NNC	ENSMUSG00000050050.18	novel	3352	10	NA	NA	12960	-1727	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1.92028643696715	5	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGTACTGATCCAACCC	NA	False	NA	NA	False	NA	NA	NA	92810024	92801639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92802032_92805727_92805843_92807541_92807653_92809391_92809469_92809957
64787	chr5	-	266	1	ISM	ENSMUSG00000050050.18	ENSMUST00000151180.8	3352	10	22901	45	-8480	-45	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACATTTTAAATGAATCTG	NA	False	NA	NA	False	NA	NA	NA	92800223	92799957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_92800000_92800200
64788	chr18	-	1691	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	-107	11	-107	0	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	535	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACATTGCCTTTTTGATG	2470	False	NA	NA	False	NA	NA	NA	46861569	46846270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
64789	chr11	+	616	5	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	3608	1	-1031	-1	3prime_fragment	FALSE	canonical	1	3	junction_1	17.5267652463311	69	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTAATCCCTCCGTTGAT	NA	False	NA	NA	False	NA	NA	NA	104474758	104478034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_104474954_104475264_104475439_104475762_104475841_104476552_104476598_104477910
64791	chr11	+	1966	17	NNC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	-5	893	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	83.5033681955405	1	90	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGACATTAATAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	43324580	43337105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334248_43335577_43335658_43336010_43336083_43336185_43336300_43336838
64792	chr11	+	1163	1	ISM	ENSMUSG00000057098.15	ENSMUST00000081265.12	5981	16	388091	1521	93270	1041	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTATTGTTTTAAACCATG	NA	False	NA	NA	False	NA	NA	NA	44896234	44897397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_44896200_44897400
64793	chr14	-	1815	19	NNC	ENSMUSG00000021820.19	novel	3604	20	NA	NA	16	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	13.0062900262494	1	34	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACATTTAAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20844140	20786724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815460_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20842586_20842682_20843968
64794	chr9	-	1527	1	FSM	ENSMUSG00000111291.2	ENSMUST00000217413.2	2420	1	719	174	719	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	9	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	44203041	44201514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44201500_44203000
64796	chr7	+	1425	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	52	7	10	-7	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	302	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTTCTTGCTGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	119701627	119720202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
64797	chr8	+	1456	9	NNC	ENSMUSG00000004637.16	novel	1771	9	NA	NA	-3	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	40.6294228361664	12	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGTGGGTGACTGGTAA	NA	False	NA	NA	False	NA	NA	NA	115166391	115601985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_115601705
64798	chr7	-	1242	1	NIC	ENSMUSG00000036835.8	novel	708	4	NA	NA	5	-13	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	21	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTAACTTTAAATATTGAG	1412	False	NA	NA	False	NA	NA	NA	30262544	30261302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30261300_30262500
64800	chr3	-	1613	10	Antisense	novelGene_ENSMUSG00000028093.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	92	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTCCCACGGACCTGCTC	NA	False	NA	NA	False	NA	NA	NA	97083809	97066123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_97066686_97073177_97073298_97073399_97073521_97073855_97073932_97075300_97075390_97075756_97075879_97078955_97079053_97081116_97081212_97082940_97083119_97083656
64803	chr12	+	927	1	Intergenic	novelGene_4440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACGTACACTATAGCTG	NA	False	NA	NA	False	NA	NA	NA	87348868	87349795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_87348900_87349800
64804	chr17	-	792	4	NNC	ENSMUSG00000004945.16	novel	780	3	NA	NA	-1	-9721	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	323.428508329121	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTATAAATAAAAAGCTGCT	3451	False	NA	NA	False	NA	NA	NA	5490535	5470865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_5471291_5483716_5483855_5489806_5489908_5490407
64806	chr4	+	1219	8	NIC	ENSMUSG00000028282.13	novel	6557	11	NA	NA	-1	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_5	91.157186513523	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTTATTAGTATGCTT	95	False	NA	NA	False	NA	NA	NA	32624082	32653262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32648026_32648127_32649172_32649258_32652673
64808	chr7	-	1525	11	FSM	ENSMUSG00000030707.16	ENSMUST00000032949.14	1660	11	133	2	70	-2	multi-exon	FALSE	canonical	0	0	junction_5	5.95315042645489	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTCAGACTCCGGTGAA	NA	False	NA	NA	False	NA	NA	NA	126303855	126298946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163_126300269_126300461_126300582_126300689_126300875_126300961_126301092_126301177_126301301_126302147_126302347_126303823
64810	chr1	-	1637	8	Antisense	novelGene_ENSMUSG00000026208.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	76	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAGGGGGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75344360	75338666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_75338862_75338955_75339056_75339210_75339369_75339535_75339664_75340114_75340333_75341968_75342014_75343401_75343485_75343650
64812	chr13	-	1878	3	Intergenic	novelGene_1444	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_2	5	1	78	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGACATGAAAGGTAATC	NA	False	NA	NA	False	NA	NA	NA	66711730	66700474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66700522_66700722_66702494_66711670
64813	chr13	-	902	5	NNC	ENSMUSG00000058672.8	novel	1610	4	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	137.838673818345	100	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTATGGTCCTTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	34261990	34258262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34258583_34259284_34259512_34260160_34260272_34260531_34260641_34261855
64814	chr7	-	1391	7	Antisense	novelGene_ENSMUSG00000063065.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTAACCCACTCATGCC	4816	False	NA	NA	False	NA	NA	NA	126364748	126361970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_126362395_126362567_126362685_126362910_126363024_126363402_126363536_126363703_126363814_126363892_126364047_126364408
64816	chr11	+	1927	4	NNC	ENSMUSG00000086981.4	novel	327	4	NA	NA	-1576	380	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.471404520791032	23	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATCTTTAAAAAA	164	False	NA	NA	False	NA	NA	NA	46437663	46448274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_46438008_46439230_46439289_46445106_46445141_46446783
64817	chr8	-	1624	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	-24	-4	-24	4	multi-exon	FALSE	canonical	3	203	junction_1	12.9185482500507	874	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTTGGGTTGTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	120567307	120535956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
64818	chr13	-	1552	1	ISM	ENSMUSG00000042364.12	ENSMUST00000109241.5	4447	2	24830	4	19907	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCGCTTGTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	113730270	113728718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_113728700_113730300
64819	chr3	+	1945	3	Antisense	novelGene_ENSMUSG00000028089.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	1	5	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTTCACAATAAACCAATC	NA	False	NA	NA	False	NA	NA	NA	97453790	97481682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_97453827_97454151_97454205_97479826
64820	chr3	-	2792	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	-45	-1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	80	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTTTCTTCTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	79750264	79719871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
64821	chr10	-	941	5	NNC	ENSMUSG00000004667.19	novel	1238	5	NA	NA	11	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1271.98476799056	3	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAAGGATACTTTGAT	5620	False	NA	NA	False	NA	NA	NA	79875524	79871808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79872136_79872360_79872436_79872962_79873219_79874272_79874448_79875416
64822	chr17	+	1040	1	FSM	ENSMUSG00000117725.2	ENSMUST00000235695.2	6295	1	90	5165	32	-5162	mono-exon	FALSE	NA	NA	NA	NA	NA	56	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACGTGTCCCCAATTTA	1163	False	NA	NA	False	NA	NA	NA	30795363	30796403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_30795400_30796400
64823	chr4	+	1181	10	Antisense	novelGene_ENSMUSG00000028455.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	64	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAGAGGTGGGGCAGAGCG	NA	False	NA	NA	False	NA	NA	NA	43028033	43031403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43028286_43028933_43029069_43029282_43029358_43029491_43029634_43029765_43029881_43030046_43030142_43030235_43030299_43030435_43030534_43030969_43031113_43031340
64825	chr7	+	2269	5	NIC	ENSMUSG00000059851.16	novel	2774	9	NA	NA	5	212	intron_retention	FALSE	canonical	3	570	junction_2	66.1603166558323	1	121	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGACCTTCAGAGTGTG	640	False	NA	NA	False	NA	NA	NA	4743170	4746264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245
64828	chr17	-	775	5	FSM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	1	-12	1	12	multi-exon	FALSE	canonical	3	72	junction_4	54.3570372628973	915	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTCAGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	79202528	79192313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202464
64830	chr11	-	1589	5	NNC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	94	-12	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	41.6735827593453	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACTCTTAAGTATTCTG	NA	False	NA	NA	False	NA	NA	NA	66943302	66928878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66942948
64831	chr1	+	1733	2	FSM	ENSMUSG00000060679.15	ENSMUST00000202358.2	687	2	-1048	2	-1048	-1	multi-exon	FALSE	canonical	3	692	junction_1	0	18	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCGCCCTTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	42941168	42944841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_42942625_42944564
64833	chr14	-	1361	4	NNC	ENSMUSG00000021752.15	novel	1650	3	NA	NA	150	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	109.772492000501	4	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGGTTGTATTTATT	NA	False	NA	NA	False	NA	NA	NA	14255483	14246209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_14247014_14247152_14247587_14249552_14249623_14255430
64834	chr2	+	2370	13	Antisense	novelGene_ENSMUSG00000027641.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCCCCGCGACAAAGCGC	NA	False	NA	NA	False	NA	NA	NA	157016922	157046446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_157017611_157019136_157019275_157029852_157029959_157030142_157030256_157033826_157033996_157034995_157035183_157035931_157035981_157037196_157037360_157037459_157037589_157037678_157037744_157038073_157038276_157041335_157041469_157046218
64835	chr18	+	328	2	FSM	ENSMUSG00000024571.16	ENSMUST00000126177.8	679	2	5	346	5	-254	multi-exon	FALSE	canonical	3	3077	junction_1	0	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCCACAGAGAGACGGGG	NA	False	NA	NA	False	NA	NA	NA	80250065	80250645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80250117_80250368
64836	chr2	+	1262	10	FSM	ENSMUSG00000041921.17	ENSMUST00000037210.9	1321	10	62	-3	5	0	multi-exon	FALSE	canonical	3	42	junction_6	11.0565326201412	195	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTGTCCAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	71283681	71355538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
64838	chr11	-	2668	6	ISM	ENSMUSG00000020905.12	ENSMUST00000021288.10	4462	15	40924	178	-4610	-178	3prime_fragment	FALSE	canonical	3	17	junction_4	4.99599839871872	20	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTTGCAAATGGCGGAC	NA	False	NA	NA	False	NA	NA	NA	67772055	67745526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_67747371_67766088_67766254_67767198_67767358_67770621_67770971_67771090_67771218_67772031
64839	chr13	-	1394	8	NIC	ENSMUSG00000021519.12	novel	784	5	NA	NA	-10	-3	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	116.048898912379	54	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCTATGTATCAGCAA	414	False	NA	NA	False	NA	NA	NA	67081115	67055034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_67055248_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
64841	chr9	-	491	3	Genic_Genomic	ENSMUSG00000058443.6	novel	768	1	NA	NA	-14	-35	multi-exon	TRUE	non_canonical	0	0	junction_1	0	42	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCGCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_50255717_50255818_50256030_50256183
64842	chr9	-	1633	1	Intergenic	novelGene_1176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTCGATATCTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	114424279	114422646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_114422600_114424300
64843	chr7	+	1490	12	ISM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	375	178	-1	-32	3prime_fragment	FALSE	canonical	3	270	junction_7	30.9136360294609	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCCCCTGTCTCTAAT	NA	False	NA	NA	False	NA	NA	NA	105386306	105391951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
64844	chr15	+	604	5	FSM	ENSMUSG00000033020.8	ENSMUST00000229973.2	414	5	-17	-173	-2	3	multi-exon	FALSE	canonical	3	17	junction_4	890.483962517012	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTCTCCCCGTTACCTG	NA	False	NA	NA	False	NA	NA	NA	79025548	79035967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035674_79035788
64845	chr4	+	546	4	FSM	ENSMUSG00000053317.12	ENSMUST00000065678.6	564	4	12	6	12	-6	multi-exon	FALSE	canonical	3	2329	junction_2	60.4225859169308	15541	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGACTGGTTGCCTGTGC	-10	True	NA	NA	False	NA	NA	NA	47474669	47483236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_47474754_47474911_47475010_47480130_47480233_47482974
64847	chr3	+	1918	12	NNC	ENSMUSG00000028048.12	novel	1938	12	NA	NA	3	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	133.04165755367	1	106	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGAAAGAGTTCGCTCCT	NA	False	NA	NA	False	NA	NA	NA	89110249	89115974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113673_89114533_89114759_89115130_89115295_89115618_89115736_89115823
64848	chrX	-	1735	2	Intergenic	novelGene_3956	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGCCTTGGTGATGGT	NA	False	NA	NA	False	NA	NA	NA	72716620	72714015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_72715415_72716284
64850	chr4	+	756	1	Antisense	novelGene_ENSMUSG00000046312.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCTCAGCCCGACTCTC	NA	False	NA	NA	False	NA	NA	NA	41495605	41496361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41495600_41496400
64851	chr12	+	2685	2	FSM	ENSMUSG00000036136.10	ENSMUST00000041133.10	3088	2	90	313	90	-313	multi-exon	FALSE	canonical	2	2	junction_1	0	10	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTAGTCCTCAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	31123949	31129937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_31125322_31128624
64852	ERCC-00096	+	1091	1	FSM	ERCC-00096A	DQ459429	1091	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00096_+_0_1100
64854	chr17	+	1050	6	Fusion	ENSMUSG00000035868.10_ENSMUSG00000117013.2	novel	1383	3	NA	NA	884	-2312	multi-exon	FALSE	canonical	3	8	junction_5	10.8554133960895	29	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACATTAAAAATGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	21870428	21879144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_21870819_21871186_21871266_21875011_21875249_21876434_21876528_21877828_21877956_21879020
64855	chr13	+	822	6	NNC	ENSMUSG00000021361.8	novel	914	6	NA	NA	60	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	266.180690509285	20	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTCTCTGGTGTCGTCTT	NA	False	NA	NA	False	NA	NA	NA	41169827	41176056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594_41174683_41175607
64856	chr17	-	1141	5	FSM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	40	-2	40	-2	multi-exon	FALSE	canonical	3	33	junction_2	9.14808723176599	160	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTCTCTTTTCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	15461005	15451844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15460962
64857	chr5	-	2479	1	ISM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	56315	1	26892	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	87	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAATCTTTTTACCTTTGT	NA	False	NA	NA	False	NA	NA	NA	21100505	21098026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_21098000_21100500
64858	chr1	+	1304	5	FSM	ENSMUSG00000026311.17	ENSMUST00000086843.11	2490	5	201	985	13	-14	multi-exon	FALSE	canonical	3	23	junction_1	3.93700393700591	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCCTCTTCAGTCTC	8986	False	NA	NA	False	NA	NA	NA	91468466	91482825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_91468587_91471877_91472020_91474649_91474953_91479775_91480162_91482472
64862	chr2	+	1616	7	NNC	ENSMUSG00000028640.12	novel	2724	7	NA	NA	9	-214	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	239.553056057873	2	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTTTTTTAAATCCGTT	NA	False	NA	NA	False	NA	NA	NA	172392581	172399532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_172392660_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
64863	chr12	+	1341	7	ISM	ENSMUSG00000021144.15	ENSMUST00000069690.5	2697	20	33251	-33	26	0	3prime_fragment	FALSE	canonical	3	59	junction_3	228.147369527291	1	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCCCTTCTGCGTCTTT	NA	False	NA	NA	False	NA	NA	NA	113095193	113100826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_113095383_113095507_113095598_113096804_113096958_113097160_113097197_113099416_113099449_113099900_113100053_113100137
64864	chr5	+	1038	11	NNC	ENSMUSG00000019494.15	novel	1787	10	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1418.5956753071	4	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCAGCCCTTCCAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	138159367	138162241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138159445_138159636_138159760_138159935_138159968_138160014_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
64865	chr5	+	683	1	Antisense	novelGene_ENSMUSG00000029503.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACGCACCTTGTCGAACT	NA	False	NA	NA	False	NA	NA	NA	110487678	110488361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_110487700_110488400
64867	chr4	+	1276	1	Antisense	novelGene_ENSMUSG00000041459.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGGAGGAAGCACAGACG	NA	False	NA	NA	False	NA	NA	NA	148709884	148711160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_148709900_148711200
64868	chr4	+	1100	5	NIC	ENSMUSG00000029066.13	novel	764	4	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	558.135064298956	5715	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	155887364	155893288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155887553_155887829_155888200_155888289_155888401_155891364_155891443_155892935
64869	chr7	-	1505	14	NNC	ENSMUSG00000030630.17	novel	1585	14	NA	NA	9	-38	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	39.5127123577947	2	60	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAAGCTACTTTGATTG	NA	False	NA	NA	False	NA	NA	NA	84255141	84234404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242461_84243920_84244052_84244665_84244766_84246241_84246295_84246409_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
64870	chr7	-	1905	6	NNC	ENSMUSG00000030610.14	novel	2269	5	NA	NA	62	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	39.1182821708725	7	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGGACACTGTCTCTTCC	NA	False	NA	NA	False	NA	NA	NA	78496949	78477225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78477413_78477710_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
64871	chr4	+	2881	8	NNC	ENSMUSG00000035275.15	novel	4045	12	NA	NA	51034	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	15.1644051539607	21	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTAGTATGTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	100977709	101009567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_100977777_100988460_100988544_100990783_100990889_100991051_100991136_100993193_100993451_100994907_100995017_100996291_100996429_101007528
64872	chr12	-	1423	2	FSM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	53	2234	0	297	multi-exon	FALSE	canonical	3	67	junction_1	0	206	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCATGGGTTAGTTTTCC	NA	False	NA	NA	False	NA	NA	NA	40087375	40085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_40086833_40087261
64873	chr8	-	1349	7	FSM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	-8	4309	-8	1	multi-exon	FALSE	canonical	3	29	junction_6	17.5214154679352	228	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTAGAGTTTCCCTGAG	NA	False	NA	NA	False	NA	NA	NA	80021574	79994535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80021542
64874	chr2	+	1512	2	Antisense	novelGene_ENSMUSG00000053141.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	3	junction_1	0	6	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAAATGACATAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	162238642	162240373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_162238756_162238974
64875	chr10	-	2759	7	FSM	ENSMUSG00000020057.3	ENSMUST00000020249.2	2807	7	12	36	12	-36	multi-exon	FALSE	canonical	0	0	junction_2	1.21335164821342	7	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCGAGAAAGTAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	88192925	88158701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_88160648_88161195_88161289_88164944_88165004_88172672_88172851_88176381_88176525_88180505_88180574_88192653
64876	chr17	-	598	4	NNC	ENSMUSG00000040048.15	novel	732	4	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1006.56257740005	43	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	NA	NA	NA	24943409	24941033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24941195_24941354_24941461_24941685_24941768_24943160
64879	chr9	+	1104	1	Intergenic	novelGene_1177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAGGAGCCATTACCAAA	730	False	NA	NA	False	NA	NA	NA	115089570	115090674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_115089600_115090700
64880	chr17	-	1270	2	NNC	ENSMUSG00000054723.7	novel	345	2	NA	NA	-4114	-2073	intron_retention	FALSE	non_canonical	0	0	junction_1	0	22	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCTCGCGAGGTTTCCA	2409	False	NA	NA	False	NA	NA	NA	57029136	57024774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57024941_57028032
64881	chr1	+	2995	21	ISM	ENSMUSG00000033276.19	ENSMUST00000148456.8	3345	26	-31	5595	-8	2594	5prime_fragment	FALSE	canonical	0	0	junction_6	2.11837201643149	3	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAGAGGTTTCCTGCCTG	NA	False	NA	NA	False	NA	NA	NA	74640630	74667664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_74640773_74641187_74641361_74642296_74642438_74642555_74642634_74644547_74644679_74648170_74648421_74649930_74650025_74650247_74650418_74650559_74650748_74651844_74651945_74655734_74655879_74661354_74661535_74662443_74662542_74662988_74663095_74664651_74664803_74665171_74665300_74665701_74665807_74666553_74666653_74666743_74666833_74667076_74667141_74667300
64883	chr1	+	794	9	NNC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_5	2269.71826445486	16	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAGAAGATGGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	160862735	160866043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
64884	chr16	-	2671	11	NNC	ENSMUSG00000022843.18	novel	2730	23	NA	NA	1344	-4	intron_retention	FALSE	non_canonical	0	0	junction_5	105.430356159884	1	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAATTAGCCACTCATGT	NA	False	NA	NA	False	NA	NA	NA	20529371	20521741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526395_20526592_20526688_20526826_20526942_20527043_20527217_20527383_20528700_20529021_20529178_20529304
64885	chr19	+	1208	6	ISM	ENSMUSG00000108414.2	ENSMUST00000205909.2	709	9	135	0	0	0	intron_retention	FALSE	canonical	3	781	junction_1	84.4369587325361	1	65	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	8701503	8703807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848
64888	chr9	+	2274	14	NNC	ENSMUSG00000039585.16	novel	12252	44	NA	NA	-29	-53117	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	14.8551188555668	8	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACACCCAGTCCACCAGAG	526	False	NA	NA	False	NA	NA	NA	59658149	59739530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59658169_59686825_59687737_59690753_59690849_59694096_59694160_59695697_59695798_59709196_59709295_59711167_59711295_59716681_59716772_59719184_59719302_59722526_59722662_59728867_59728990_59731473_59731616_59734405_59734602_59739471
64889	chr7	+	839	2	Genic_Genomic	ENSMUSG00000107470.3	novel	795	1	NA	NA	-23	78	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAGATTAAAATT	NA	False	NA	NA	False	NA	NA	NA	3230818	3231714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_3231358_3231414
64890	chr2	-	1016	7	NNC	ENSMUSG00000017707.10	novel	3683	10	NA	NA	16	-4688	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	190.495333859447	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCGCCGTCACAGAGT	NA	False	NA	NA	False	NA	NA	NA	163487029	163469879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_163469973_163471046_163471138_163472845_163473016_163474025_163474171_163478681_163478925_163481085_163481248_163486917
64891	chr11	-	766	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	-40	6	-40	-6	multi-exon	FALSE	canonical	3	218	junction_4	57.8986182909402	923	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAATCAGATCAAGTTAT	NA	False	NA	NA	False	NA	NA	NA	62172241	62158055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
64892	chr5	-	1169	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.641301725352	83	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGAAACGTAGGATGCT	7992	False	NA	NA	False	NA	NA	NA	137598919	137594908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137596851_137596942_137597855_137598086_137598238_137598315_137598532
64894	chr11	+	2623	14	ISM	ENSMUSG00000062312.6	ENSMUST00000058295.6	5012	27	15665	548	1055	91	3prime_fragment	FALSE	canonical	3	40	junction_1	6.93247225725665	19	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGTGGGAGAGTGGGT	NA	False	NA	NA	False	NA	NA	NA	98318960	98327994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98319053_98319649_98319811_98322542_98322591_98323736_98323876_98323956_98324080_98324224_98324324_98324717_98324904_98325039_98325196_98325325_98325402_98325627_98325775_98326100_98326199_98326350_98326540_98326754_98327008_98327138
64895	chr11	-	1182	7	ISM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	564	2	5	-2	3prime_fragment	FALSE	canonical	3	130	junction_2	29.1514245887839	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTGCATTGATTCCTTT	NA	False	NA	NA	False	NA	NA	NA	113599788	113588999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629
64896	chr14	-	650	2	Genic_Genomic	ENSMUSG00000062611.5	novel	792	1	NA	NA	-17	43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTGATCGTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88361261	88360409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_88360816_88361017
64897	chr6	-	1205	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	21	500	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	319.406574760132	1155	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCACTTTTCGGTACCTAG	NA	False	NA	NA	False	NA	NA	NA	81942918	81938454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_81938567_81938746_81939173_81939296_81939479_81940914_81941050_81941219_81941339_81942687
64898	chr5	-	1295	3	FSM	ENSMUSG00000028958.16	ENSMUST00000030799.15	1333	3	31	7	31	1	multi-exon	FALSE	canonical	3	68	junction_2	11	216	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCAGTGTGTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	24652821	24650462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24651272_24651531_24651951_24652754
64899	chr6	-	1300	7	NNC	ENSMUSG00000053768.14	novel	1467	8	NA	NA	13	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	326.730988565347	1	71	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAAGACTGGCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	33037139	32769165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945202_33026317_33026360_33036934
64901	chr13	+	1462	1	ISM	ENSMUSG00000007617.19	ENSMUST00000102752.10	5713	5	54501	5	50962	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	22	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTTCTAGTATATTG	NA	False	NA	NA	False	NA	NA	NA	93495503	93496965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_93495500_93497000
64902	chr15	-	2311	3	NNC	ENSMUSG00000022304.14	novel	2466	10	NA	NA	15921	-455	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_1	0.5	35	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGGTCACCTCACAACAG	NA	False	NA	NA	False	NA	NA	NA	39640726	39632337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_39634502_39640454_39640539_39640663
64903	chr1	+	1486	7	FSM	ENSMUSG00000026426.11	ENSMUST00000125774.2	1495	7	5	4	5	-4	multi-exon	FALSE	canonical	1	1	junction_1	183.490235889179	217	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGGGGTGTGTATGGTGC	NA	False	NA	NA	False	NA	NA	NA	135075411	135084003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_135075466_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
64904	chr5	+	1108	3	NNC	ENSMUSG00000061461.12	novel	922	3	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	162.5	155	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3450	False	NA	NA	False	NA	NA	NA	53424522	53435882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_53424930_53434484_53434542_53435238
64905	chr10	-	1081	4	Intergenic	novelGene_3526	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	22	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACGACAACACAAAATGTC	NA	False	NA	NA	False	NA	NA	NA	111213676	111208970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_111209451_111210511_111210577_111211615_111211745_111213269
64906	chr7	-	1185	7	NNC	ENSMUSG00000061479.16	novel	1336	7	NA	NA	9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1059.40371068928	2	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCAGTGTTGTCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	26895569	26886433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_26886771_26888290_26888380_26888783_26888929_26891028_26891206_26892294_26892468_26894868_26894982_26895418
64907	chr9	+	2957	1	NIC	ENSMUSG00000032563.17	novel	3972	10	NA	NA	6072	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGCCTCATCAAAGATGGT	NA	False	NA	NA	False	NA	NA	NA	104954129	104957086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_104954100_104957100
64908	chr17	-	1535	2	FSM	ENSMUSG00000033475.16_ENSMUSG00000096549.10	ENSMUST00000143156.2	1037	2	-498	0	-498	0	multi-exon	FALSE	canonical	3	4486	junction_1	0	220	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	47999809	47997664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47998214_47998823
64909	chr6	-	1548	3	Antisense	novelGene_ENSMUSG00000034083.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGGCAGCAGAACCGGAA	NA	False	NA	NA	False	NA	NA	NA	91859552	91855049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_91855164_91857233_91857341_91858225
64911	chr13	-	1372	11	NNC	ENSMUSG00000033114.12	novel	917	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.4458742310018	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCACAGTGTGATATTACAG	NA	False	NA	NA	False	NA	NA	NA	64277144	64244955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64245510_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
64912	chr5	+	1211	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200748.4	548	7	-391	-272	10	-1	multi-exon	FALSE	canonical	2	19	junction_6	104.663614605183	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGAATGCTGCCGTACCT	604	False	NA	NA	False	NA	NA	NA	31205674	31211960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211658
64913	chr11	-	3212	8	ISM	ENSMUSG00000000317.12	ENSMUST00000000326.12	3366	9	691	1	629	-1	3prime_fragment	FALSE	canonical	0	0	junction_3	0.534522483824849	7	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTTGTGTCCTAGGAT	NA	False	NA	NA	False	NA	NA	NA	70119874	70114954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70116970_70117312_70117451_70117534_70117666_70117734_70117900_70118452_70118578_70118859_70119208_70119313_70119536_70119806
64916	chr5	-	990	6	ISM	ENSMUSG00000029478.17	ENSMUST00000125053.8	5672	27	15804	6354	-84	1589	internal_fragment	FALSE	canonical	3	99	junction_5	22.3839228018683	2	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAGTAAGGGGAAGCCA	2262	False	NA	NA	False	NA	NA	NA	125104072	125100570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125100711_125101196_125101347_125102072_125102267_125102481_125102628_125102715_125102869_125103865
64917	chr5	-	1320	2	ISM	ENSMUSG00000029478.17	ENSMUST00000144354.2	646	3	4274	-1068	4274	-3	3prime_fragment	FALSE	canonical	3	138	junction_1	0	56	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAACGTTTCTACTCTGC	6897	False	NA	NA	False	NA	NA	NA	125096010	125094228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125095413_125095874
64918	chr9	+	1890	9	FSM	ENSMUSG00000092192.8	ENSMUST00000034734.9	1975	9	85	0	85	0	multi-exon	FALSE	canonical	3	12	junction_2	4.44233891097922	42	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTCTGAAAACCTTATT	9263	False	NA	NA	False	NA	NA	NA	72866151	72880346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72866280_72867863_72868012_72868539_72868674_72869196_72869423_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
64919	chr11	-	929	1	Intergenic	novelGene_2488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCGGCAGGATCGCTCAC	NA	False	NA	NA	False	NA	NA	NA	103304612	103303683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_103303700_103304600
64920	chr19	+	1487	9	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	-31	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	7.58184509206037	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTCTACTGCCCTGAGG	8007	False	NA	NA	False	NA	NA	NA	6234386	6274251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6234613_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6271702_6271776_6272677_6272787_6273550
64921	chr2	-	1853	15	FSM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	235	3528	235	345	multi-exon	FALSE	canonical	3	8	junction_4	6.77630927178938	1	62	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCCTTCACAGTCAGCT	8514	False	NA	NA	False	NA	NA	NA	126774920	126735838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
64922	chr4	-	1839	4	FSM	ENSMUSG00000050854.10	ENSMUST00000128098.8	929	4	5	-915	5	-3	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	35	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTCTGTCTGCACCATG	8014	False	NA	NA	False	NA	NA	NA	118401236	118398140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118401129
64923	chr7	-	1006	9	FSM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	-12	4	1	0	multi-exon	FALSE	canonical	3	222	junction_2	22.8363744933385	727	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGACAAATCTCAAGTGCA	4873	False	NA	NA	False	NA	NA	NA	30259083	30254869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
64924	chr5	+	3018	1	Intergenic	novelGene_863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTGAGGGCTGGCAGGC	NA	False	NA	NA	False	NA	NA	NA	134434739	134437757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_134434700_134437800
64925	chr4	-	885	4	FSM	ENSMUSG00000063882.13	ENSMUST00000134760.2	579	4	-309	3	-272	-2	multi-exon	FALSE	canonical	3	10	junction_2	488.184618993903	8393	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCTTTGTCCTTCCTTT	7385	False	NA	NA	False	NA	NA	NA	115932540	115924164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_115924370_115927059_115927222_115927864_115927955_115932112
64926	chr7	+	1210	8	NNC	ENSMUSG00000066979.7	novel	2218	8	NA	NA	2	-88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	478.238562277217	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGATTCTCCTCCCCTAC	NA	False	NA	NA	False	NA	NA	NA	131162121	131172805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165210_131167937_131168081_131169912_131170091_131170233_131170451_131172607
64927	chr8	-	1667	4	ISM	ENSMUSG00000031605.9	ENSMUST00000034017.9	3412	15	99679	180	5015	-7	3prime_fragment	FALSE	canonical	3	189	junction_2	11.4309521329882	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAACGTCCTTGGTTTTAC	NA	False	NA	NA	False	NA	NA	NA	65202990	65192888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_65194009_65195988_65196133_65202065_65202207_65202728
64928	chr14	+	797	2	NNC	ENSMUSG00000022010.20	novel	801	2	NA	NA	-16	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	203	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCATATCAAATGTT	6575	False	NA	NA	False	NA	NA	NA	76741953	76745179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742209_76744637
64930	chr1	+	1230	9	NNC	ENSMUSG00000026456.19	novel	1837	9	NA	NA	2	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	180.995467829998	1	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAGCCGAGGCCCTAATG	8187	False	NA	NA	False	NA	NA	NA	134333734	134339447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334907_134336141_134336226_134337338_134337425_134338230_134338331_134338644_134339089_134339334
64932	chr9	-	1113	7	NIC	ENSMUSG00000032067.7	novel	589	7	NA	NA	-2	-16	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	39.4574313518872	117	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTTTGTTATCTACCT	7962	False	NA	NA	False	NA	NA	NA	50439948	50432933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439445_50439533_50439856
64933	chr11	+	929	1	ISM	ENSMUSG00000020397.16	ENSMUST00000170928.8	2390	2	3719	1113	1028	81	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTAGATTTATTCCAAAA	NA	False	NA	NA	False	NA	NA	NA	46331506	46332435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_46331500_46332400
64935	chr19	+	2337	3	NNC	ENSMUSG00000090235.2	novel	2327	2	NA	NA	-832	123	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	1	29	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTCTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	42766638	42770016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_42766727_42767671_42767783_42767878
64936	chr17	-	1483	8	NNC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	-57	-1268	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	198.190178714223	39	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTATGTGTGTATGTATG	NA	False	NA	NA	False	NA	NA	NA	53996418	53983081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_53983740_53986678_53986730_53988472_53988514_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
64939	chr4	+	639	5	ISM	ENSMUSG00000058046.2	ENSMUST00000062145.2	1783	15	18105	79	18105	-79	3prime_fragment	FALSE	canonical	1	2	junction_1	0.82915619758885	3	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCTCCAAAACGAGTAAGA	NA	False	NA	NA	False	NA	NA	NA	62461710	62466151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_62461739_62461933_62461977_62464256_62464379_62465501_62465566_62465769
64941	chr19	+	775	5	NNC	ENSMUSG00000071655.13	novel	1033	10	NA	NA	-21	-1845	intron_retention	FALSE	non_canonical	0	0	junction_4	581.762569696607	1	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTGAAAGGGACAAAGCA	5891	False	NA	NA	False	NA	NA	NA	8848901	8851175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8848950_8849034_8849277_8849371_8849652_8850877_8851066_8851158
64942	chr14	-	833	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	5	-2	5	1	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	860	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTCATGAGGTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	57809021	57787052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
64943	chr8	-	603	3	Intergenic	novelGene_1670	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACAAGAGCCTCCAGGGCA	9739	False	NA	NA	False	NA	NA	NA	78800549	78792947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_78793054_78799074_78799135_78800112
64944	chr15	-	1679	1	ISM	ENSMUSG00000055065.8	ENSMUST00000054014.9	4732	13	17327	0	17141	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	1120	False	NA	-24	True	NA	NA	NA	79413615	79411936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79411900_79413600
64945	chr11	+	1257	2	NIC	ENSMUSG00000090266.11	novel	847	4	NA	NA	-614	3	intron_retention	FALSE	canonical	3	134	junction_1	0	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAATGGGTATGAAGATGA	NA	False	NA	NA	False	NA	NA	NA	116739112	116740458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116740127_116740215
64946	chr8	-	2530	14	FSM	ENSMUSG00000043251.7	ENSMUST00000057855.4	2497	14	-35	2	-32	0	multi-exon	FALSE	canonical	3	7	junction_13	7.19467258528611	23	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTCTGAATCTATGTGT	NA	False	NA	NA	False	NA	NA	NA	106022765	106016557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106021891_106022068_106022257_106022339_106022537
64947	chr15	-	951	1	Antisense	novelGene_ENSMUSG00000100199.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGTGCCTCTCTTAGTG	5254	False	NA	NA	False	NA	NA	NA	82789635	82788684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_82788700_82789600
64949	chr17	+	376	1	ISM	ENSMUSG00000007570.17	ENSMUST00000114803.9	2025	10	12655	23	7719	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	30	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAAGAAGACAGTCCAT	NA	False	NA	NA	False	NA	NA	NA	28545147	28545523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_28545100_28545500
64950	chr11	+	2135	6	FSM	ENSMUSG00000034614.15	ENSMUST00000045153.11	2573	6	431	7	24	-7	multi-exon	FALSE	canonical	2	3	junction_1	4.60434577328853	17	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCACCTTTTTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	3280831	3292964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3281005_3281914_3282032_3282108_3282229_3283208_3283413_3283504_3283584_3291522
64951	chr1	+	1537	5	FSM	ENSMUSG00000026278.15	ENSMUST00000027499.13	1468	5	-69	0	-69	0	multi-exon	FALSE	canonical	3	42	junction_1	2.9474565306379	102	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGACTCTACTCTGCT	NA	False	NA	NA	False	NA	NA	NA	93613312	93623486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93613577_93614139_93614392_93616878_93617008_93621781_93621946_93622758
64954	chr3	-	2086	1	NIC	ENSMUSG00000042520.17	novel	3385	27	NA	NA	-4516	2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTTCTTTCCGTGCA	NA	False	NA	NA	False	NA	NA	NA	89915609	89913523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89913500_89915600
64955	chr9	-	1309	4	Intergenic	novelGene_1166	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	221	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCGCTCAGCCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	108675187	108661004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_108661067_108673259_108673594_108673851_108673981_108674403
64957	chr2	+	1099	6	NNC	ENSMUSG00000008226.15	novel	3309	8	NA	NA	-14	1408	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	39.6756852492808	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATCCCAAGGTTGAGG	NA	False	NA	NA	False	NA	NA	NA	73142983	73153774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73153499
64958	chr9	+	1561	3	ISM	ENSMUSG00000032411.16	ENSMUST00000179065.8	2213	10	51154	21	-159	-21	3prime_fragment	FALSE	canonical	3	407	junction_1	14.5	70	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTAAATTGCATTTCAAAC	NA	False	NA	NA	False	NA	NA	NA	96192459	96201013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_96192742_96199529_96199636_96199840
64959	chr17	-	561	2	Antisense	novelGene_ENSMUSG00000024422.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTCAGTAGTGGATTCAA	NA	False	NA	12	True	NA	NA	NA	36203553	36201662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36201979_36203308
64960	chr17	-	1070	1	Antisense	novelGene_ENSMUSG00000024422.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGCTATACCTTGAGC	NA	False	NA	NA	False	NA	NA	NA	36201172	36200102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36200100_36201200
64961	chr5	+	1299	5	FSM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	-10	476	-10	-2	multi-exon	FALSE	canonical	3	46	junction_3	167.334059593377	203	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTTGTGTACTTTTTGT	1281	False	NA	NA	False	NA	NA	NA	145168514	145174656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859
64963	chr16	-	1081	4	FSM	ENSMUSG00000022683.14	ENSMUST00000023364.7	1423	4	338	4	34	-4	multi-exon	FALSE	canonical	3	37	junction_3	8.17856276425687	204	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGGCTCCTTGTGTAAGAG	NA	False	NA	NA	False	NA	NA	NA	13548509	13532926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_13533461_13542972_13543080_13545826_13545978_13548220
64964	chrX	-	1342	3	FSM	ENSMUSG00000079536.2	ENSMUST00000114125.2	627	3	-142	-573	-142	573	multi-exon	FALSE	canonical	3	15	junction_1	3.5	174	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCAATTTCAGTGGGTAG	NA	False	NA	NA	False	NA	NA	NA	73525147	73523319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73524038_73524213_73524343_73524652
64966	chr7	+	2467	3	FSM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	-1	9	-1	-9	multi-exon	FALSE	canonical	3	64	junction_1	1	37	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGAAAGATGTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	43321438	43327713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43321500_43324527_43325071_43325850
64967	chr12	-	1020	7	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	1105	8	NA	NA	-78	-2	multi-exon	FALSE	canonical	0	0	junction_1	68.6844637130957	5	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATCTGAAATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	55201759	55092462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_55092729_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55201606
64968	chr7	-	1460	7	Antisense	novelGene_ENSMUSG00000035632.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	40	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGTCCAAGATGGCGGCG	8852	False	NA	NA	False	NA	NA	NA	3656614	3648300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_3648583_3653798_3653875_3653978_3654045_3654264_3654342_3654492_3654930_3655021_3655128_3656198
64970	chr12	+	2277	14	FSM	ENSMUSG00000021013.17	ENSMUST00000085109.10	2272	14	1	-6	1	0	multi-exon	FALSE	canonical	3	15	junction_7	3.54347470962493	72	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCACTTTTCACAAGTT	NA	False	NA	NA	False	NA	NA	NA	98886833	98949497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_98887043_98908476_98908598_98909561_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942411_98942685_98942809_98946060_98946145_98948716
64972	chr4	+	2125	5	NNC	ENSMUSG00000028758.13	novel	1968	7	NA	NA	-4	-10359	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.77491721763537	5	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	137989805	138004114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137990045_137996255_137996403_137997156_137997259_138002277_138002795_138002994
64973	chr2	+	1634	10	NNC	ENSMUSG00000027257.14	novel	1862	11	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	26.3935083676009	10	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	4800	False	NA	NA	False	NA	NA	NA	91087207	91095024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_91087272_91090208_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093712_91094535
64974	chr1	+	1042	1	ISM	ENSMUSG00000041757.18	ENSMUST00000105082.9	7085	23	55879	418	4025	-418	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGCAGCTCTTTAAACT	6669	False	NA	NA	False	NA	NA	NA	133229713	133230755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_133229700_133230800
64975	chr8	+	2478	2	FSM	ENSMUSG00000097042.3	ENSMUST00000180411.3	2311	2	-170	3	-170	-3	multi-exon	FALSE	canonical	3	14	junction_1	0	20	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGTGTCAGTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	22970136	22973345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_22972071_22972801
64976	chr5	-	985	6	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	1817	8	-646	-2	3prime_fragment	FALSE	canonical	1	50	junction_4	239.418796254597	1134	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTAATGCGGCCAGCCA	NA	False	NA	NA	False	NA	NA	NA	109704985	109702582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866
64977	chr7	+	2723	3	ISM	ENSMUSG00000051527.12	ENSMUST00000198068.3	4420	5	4662	1192	4662	-136	3prime_fragment	FALSE	canonical	1	1	junction_1	1.5	4	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAGATTTTTGAGGAAC	3045	False	NA	NA	False	NA	NA	NA	6955262	6966632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_6955297_6962961_6963149_6964130
64978	chr19	-	708	1	NIC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	1383	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCGGCTTGCCTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	5546010	5545302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5545300_5546000
64979	chr5	-	603	2	ISM	ENSMUSG00000058153.16	ENSMUST00000200575.5	4998	15	50402	2384	50402	274	3prime_fragment	FALSE	canonical	1	1	junction_1	0	20	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATTCCAATTTAAAAA	5324	False	NA	NA	False	NA	NA	NA	112572591	112569404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_112569905_112572488
64980	chr5	-	1771	1	ISM	ENSMUSG00000058153.16	ENSMUST00000079491.14	5857	17	156049	5	54201	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTGCCTGGATGTGGGT	9123	False	NA	NA	False	NA	NA	NA	112568792	112567021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_112567000_112568800
64981	chr2	-	1085	1	NIC	ENSMUSG00000075467.5	novel	2766	2	NA	NA	720	-2175	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCACCGGGCCTGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	26241392	26240307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26240300_26241400
64982	chr11	+	2891	1	Intergenic	novelGene_2521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCCCCCGCCTTGGCAT	NA	False	NA	NA	False	NA	NA	NA	113087703	113090594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_113087700_113090600
64983	chr7	+	1263	7	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5525	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	10.2265993044283	52	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAAAGGTTGGCTCCTT	801	False	NA	NA	False	NA	NA	NA	24471105	24484073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24471221_24472009_24472071_24473674_24473740_24474864_24474981_24477550_24477911_24480294_24480655_24483887
64984	chr9	+	2932	1	ISM	ENSMUSG00000025899.15	ENSMUST00000211933.2	7674	12	52737	8	9008	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	25	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTGCTTTTTGTCATAG	8936	False	NA	NA	False	NA	NA	NA	3388214	3391146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_3388200_3391100
64985	chr9	-	1166	1	Genic_Genomic	ENSMUSG00000032252.15	novel	NA	NA	NA	NA	-10642	3	mono-exon	FALSE	NA	NA	NA	NA	NA	16	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATATGGTGTCTGTTTCT	1962	False	NA	NA	False	NA	NA	NA	61988764	61987598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_61987600_61988800
64986	chr13	-	1369	6	NIC	ENSMUSG00000025872.6	novel	2335	6	NA	NA	7	-1007	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	215.338802820114	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAACCAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	54616632	54607656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614269_54615638_54615796_54616353
64987	chr13	+	953	9	NNC	ENSMUSG00000025875.15	novel	718	7	NA	NA	363	-15	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	152.249589490415	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAACAACACTTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	54937820	54944566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54937896_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
64988	chr10	-	2866	1	Intergenic	novelGene_3521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	143	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCCCCAAAAACGAAAGCC	NA	False	NA	NA	False	NA	NA	NA	99178017	99175151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_99175200_99178000
64989	chr4	+	1151	9	NNC	ENSMUSG00000035637.15	novel	1280	9	NA	NA	-6	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.538539712293	2	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTCTGGGCCTATGAC	29	True	NA	NA	False	NA	NA	NA	44981454	44990695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_44981535_44982908_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
64990	chr12	-	1623	13	NNC	ENSMUSG00000020566.20	novel	1425	13	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	8.24073553890805	92	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCCTGAGTCTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	17374731	17334731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17348026_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
64991	chr15	-	347	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	105	-62	105	62	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGGCTACTTCAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	73681640	73681293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_73681300_73681600
64992	chr11	+	2465	17	NNC	ENSMUSG00000041164.16	novel	4116	20	NA	NA	-56	-2095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	134.284780759958	1	68	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCCACCACCCCAAACCT	NA	False	NA	NA	False	NA	NA	NA	6345131	6353835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6345289_6345567_6345679_6345757_6345873_6346231_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349932_6350769_6350801_6351068_6351256_6352406_6352475_6352800_6352873_6353119_6353365_6353785
64994	chr14	-	1958	10	NNC	ENSMUSG00000021938.13	novel	4114	9	NA	NA	86	1520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	112.283481629818	2	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCTTTTGAATCTTAAA	NA	False	NA	NA	False	NA	NA	NA	57015687	56959922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247_57015290_57015603
64995	chr7	+	2866	7	Genic_Genomic	ENSMUSG00000059070.17	novel	2989	7	NA	NA	-5161	-2437	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAGCCTCACCTCCGACA	NA	False	NA	NA	False	NA	NA	NA	45359719	45367112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_45361230_45361472_45361596_45361678_45361776_45361879_45362030_45362683_45363155_45366417_45366489_45366668
64996	chrX	-	2028	2	ISM	ENSMUSG00000031118.9	ENSMUST00000114866.2	1232	4	-19	-198	-19	1	intron_retention	FALSE	canonical	3	83	junction_1	0	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTGCTCCGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	51059943	51057570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_51058747_51059091
64997	chr6	-	1208	3	Antisense	novelGene_ENSMUSG00000037997.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAAGACAAAGATAGACAC	2696	False	NA	NA	False	NA	NA	NA	127455935	127451198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_127451273_127454719_127454873_127454954
64998	chr1	+	1925	14	NNC	ENSMUSG00000049439.14	novel	2223	13	NA	NA	-3	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	28.1298763031124	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGGAGGATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	60382478	60427216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_60382617_60391279_60391330_60392067_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297_60426698_60426995
64999	chr8	-	1438	6	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-2915	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	108.285548435606	1	88	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	6357	False	NA	NA	False	NA	NA	NA	43597438	43582843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591838_43593675_43593801_43597362
65000	chr2	-	1090	1	NIC	ENSMUSG00000026941.17	novel	746	5	NA	NA	326	-3256	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	20	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5905	False	NA	NA	False	NA	NA	NA	25464531	25463441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25463400_25464500
65001	chr1	+	2992	4	NNC	ENSMUSG00000026114.15	novel	2197	7	NA	NA	27554	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.471404520791032	15	75	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGATATATATAAATGGA	NA	False	NA	NA	False	NA	NA	NA	37285839	37302445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37285952_37293040_37293146_37297073_37297181_37299777
65002	chr9	-	2538	15	Antisense	novelGene_ENSMUSG00000032308.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	113	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGCAGAGAAGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	57503153	57496822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_57496968_57497604_57497746_57497941_57498064_57498495_57498604_57499278_57499419_57499611_57499696_57500099_57500258_57500444_57500791_57501061_57501130_57501259_57501328_57501414_57501490_57501564_57501606_57501887_57501936_57502063_57502121_57502216
65003	chr12	-	2047	3	NNC	ENSMUSG00000054013.7	novel	521	4	NA	NA	2	-10150	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGCCCATATTACTTT	NA	False	NA	NA	False	NA	NA	NA	112483179	112478321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_112480045_112480110_112480318_112483062
65004	chr19	-	1155	1	Intergenic	novelGene_1214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGGTAGTACACCTGAA	6653	False	NA	NA	False	NA	NA	NA	17159812	17158657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_17158700_17159800
65005	chr14	+	1841	1	FSM	ENSMUSG00000033446.8	ENSMUST00000044405.8	5400	1	105	3454	105	-3454	mono-exon	FALSE	NA	NA	NA	NA	NA	39	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACTCCATAAAGTTAAGG	NA	False	NA	NA	False	NA	NA	NA	73475439	73477280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_73475400_73477300
65006	chr5	-	715	5	FSM	ENSMUSG00000059518.15	ENSMUST00000156963.8	1208	5	441	52	-37	-22	multi-exon	FALSE	canonical	0	0	junction_4	134.024251536802	823	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACGGCCTGGTGAAAGG	NA	False	NA	NA	False	NA	NA	NA	137016434	137011069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016342
65007	chr10	-	1443	6	NIC	ENSMUSG00000035478.15	novel	1566	7	NA	NA	71	0	intron_retention	FALSE	canonical	3	918	junction_5	149.282818837266	223	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80235185	80228372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
65008	chr7	-	563	1	NIC	ENSMUSG00000053985.11	novel	2835	5	NA	NA	873	-11885	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACTTAATCTTCAATCAA	NA	False	NA	NA	False	NA	NA	NA	29749925	29749362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29749400_29749900
65009	chr11	+	2314	1	Genic_Genomic	ENSMUSG00000099928.2	novel	NA	NA	NA	NA	1449	1596	mono-exon	FALSE	NA	NA	NA	NA	NA	48	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95898163	95900477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_95898200_95900500
65010	chr1	+	1360	2	FSM	ENSMUSG00000041801.6	ENSMUST00000038945.6	1435	2	55	20	55	-20	multi-exon	FALSE	canonical	3	639	junction_1	0	171	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCGTGGGCAGTAACCACG	6800	False	NA	NA	False	NA	NA	NA	135693911	135696854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_135694633_135696215
65011	chr15	-	2124	8	Intergenic	novelGene_3291	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.349927106111883	3	53	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACAGTTTCAGGATGTAG	NA	False	NA	NA	False	NA	NA	NA	52831385	52786034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_52786278_52789608_52790835_52792994_52793127_52795740_52795785_52796572_52796764_52796849_52796962_52800775_52800867_52831300
65012	chr1	-	1314	2	Intergenic	novelGene_350	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	75	junction_1	0	4	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCTTTGTGAGATCTT	191	False	NA	NA	False	NA	NA	NA	21325547	21323509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_21323669_21324392
65013	chr6	-	2603	18	Intergenic	novelGene_4175	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	8	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCCGCCTGCAGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	55295633	55180465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_55180553_55188232_55188353_55193489_55193725_55195203_55195449_55200974_55201347_55232588_55232648_55237516_55237625_55239701_55239819_55240758_55240850_55253538_55253641_55255031_55255095_55256067_55256133_55261727_55261797_55274668_55274735_55277925_55278087_55285136_55285320_55286245_55286320_55295247
65015	chrX	-	921	8	NNC	ENSMUSG00000015668.14	novel	813	8	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	224.417795503778	13	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	NA	False	NA	NA	NA	99669537	99666488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_99666833_99666973_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
65016	chr9	+	1327	3	NNC	ENSMUSG00000036411.11	novel	2223	7	NA	NA	-9275	-10093	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9	79	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCTGTGTTCTCTGACTA	NA	False	NA	NA	False	NA	NA	NA	22313533	22336308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22313656_22322740_22323046_22335408
65017	chr8	-	2638	5	NNC	ENSMUSG00000037415.8	novel	5308	14	NA	NA	45	-9631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.6706292729706	6	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATCCCCAACCCTTGTT	NA	False	NA	NA	False	NA	NA	NA	106553792	106504570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106506661_106513254_106513427_106532163_106532217_106552709_106552822_106553581
65018	chr6	+	1977	9	ISM	ENSMUSG00000029763.18	ENSMUST00000090381.11	2598	10	-30	34608	13	-34608	5prime_fragment	FALSE	canonical	3	116	junction_4	13.629013170439	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAATAAGATTTGAGC	NA	False	NA	NA	False	NA	NA	NA	33226032	33419476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885
65019	chr16	+	1249	9	NIC	ENSMUSG00000055447.20	novel	5250	10	NA	NA	33	4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_8	31.4799043041748	1	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATCCCATTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	49676051	49731448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49731231
65020	chr7	-	639	1	Antisense	novelGene_ENSMUSG00000038646.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGCTCTCCAAGGTAAACA	NA	False	NA	NA	False	NA	NA	NA	81413392	81412753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_81412800_81413400
65021	chr5	-	1119	1	ISM	ENSMUSG00000037344.15	ENSMUST00000039991.14	3330	14	17911	10	6826	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAACACTATGGGCTGGTG	245	False	NA	NA	False	NA	NA	NA	137313948	137312829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137312800_137313900
65022	chr13	-	356	1	FSM	ENSMUSG00000014850.16	ENSMUST00000190462.2	1961	1	-85	1690	-85	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAACTAAACTACCAAATT	5216	False	NA	NA	False	NA	NA	NA	92446050	92445694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_92445700_92446000
65023	chr4	+	2343	3	NIC	ENSMUSG00000028461.13	novel	817	6	NA	NA	-3	-4	intron_retention	FALSE	canonical	3	301	junction_2	20.5	3	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTACTGGGTGTTCCTCTGT	26	True	NA	NA	False	NA	NA	NA	43493413	43495917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_43495256_43495341_43495622_43495696
65025	chr11	+	171	1	Intergenic	novelGene_2538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTTTTTAAAAGATTCT	NA	False	NA	NA	False	NA	NA	NA	118905855	118906026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_118905900_118906000
65026	chr12	+	840	7	NNC	ENSMUSG00000059060.16	novel	1759	8	NA	NA	12	-181250	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	21.6365174852352	168	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTCCCTTTTCCTTCTT	8725	False	NA	NA	False	NA	NA	NA	79344136	79374180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_79344197_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994
65027	chr7	-	2330	7	FSM	ENSMUSG00000073968.5	ENSMUST00000082175.7	2388	7	50	8	-7	-1	multi-exon	FALSE	canonical	2	5	junction_6	1.21335164821342	22	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAATCCACAGATCACGAG	NA	False	NA	NA	False	NA	NA	NA	102336484	102326796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_102328045_102328242_102328344_102328880_102328904_102329343_102329605_102330869_102330966_102333254_102333719_102336347
65028	chr11	-	1258	6	FSM	ENSMUSG00000038352.16	ENSMUST00000042971.16	1571	6	313	0	61	0	multi-exon	FALSE	canonical	1	2	junction_2	2.57681974534503	66	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTCACTTCTTATTTTTG	NA	False	NA	NA	False	NA	NA	NA	97886694	97880403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97881166_97883107_97883260_97884250_97884335_97885163_97885312_97885892_97885954_97886643
65030	chr4	+	1617	6	FSM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	36	35	-2	-35	multi-exon	FALSE	canonical	3	86	junction_5	7.62627038597505	275	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTCCCTGAGTTGCACAT	NA	False	NA	NA	False	NA	NA	NA	155151508	155156855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155151632_155152279_155152361_155153119_155153527_155154843_155155020_155155097_155155234_155156161
65031	chr7	+	1605	16	NNC	ENSMUSG00000002963.18	novel	2184	16	NA	NA	-3	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	81.5168421588788	1	81	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACACTGGTGCCACTCT	9513	False	NA	NA	False	NA	NA	NA	44506760	44512053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509827_44510286_44510336_44510421_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
65032	chrX	-	1001	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	-16	-1	-6	1	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	1334	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGTGGCAAATAGTCCT	NA	False	NA	NA	False	NA	NA	NA	52799679	52785713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
65033	chr3	+	1968	2	FSM	ENSMUSG00000023087.16	ENSMUST00000144826.2	9797	2	7825	4	4623	-4	multi-exon	FALSE	canonical	3	127	junction_1	0	77	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCTTTTAATATCTTG	NA	False	NA	NA	False	NA	NA	NA	51155451	51159041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_51155496_51157117
65035	chr15	+	814	5	ISM	ENSMUSG00000052253.7	ENSMUST00000061875.8	2802	6	2550	1052	121	2	3prime_fragment	TRUE	canonical	3	450	junction_1	30.1361493890643	177	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCGTATTTGAGCAGTGTT	2516	False	NA	NA	False	NA	NA	NA	25987001	25997515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_25987133_25987246_25987410_25991538_25991652_25996191_25996336_25997252
65036	chr4	-	1600	13	NNC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	-26	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	20.0643063395894	1	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCAAGTATCCTGGTTT	4279	False	NA	NA	False	NA	NA	NA	135221843	135179616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135206911_135206958_135207019_135209782_135209852_135218243_135218594_135221740
65039	chr15	+	2110	2	Intergenic	novelGene_3315	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	14	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACTCTGAAGGATTCCT	NA	False	NA	NA	False	NA	NA	NA	77240689	77244670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_77240860_77242730
65041	chr18	+	948	3	FSM	ENSMUSG00000024258.5	ENSMUST00000234146.2	706	3	-32	-210	-31	-2	multi-exon	FALSE	canonical	3	63	junction_2	315.5	34	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAGAATTGTATTTAT	NA	False	NA	NA	False	NA	NA	NA	31922180	31929752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_31922298_31924892_31925074_31929102
65042	chr11	-	1900	16	ISM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	1685	1119	1603	-11	3prime_fragment	FALSE	canonical	3	153	junction_14	22.781473954851	1	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTAACTCACTTCCGAGC	3190	False	NA	NA	False	NA	NA	NA	116195875	116179945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689
65043	chr2	+	884	2	ISM	ENSMUSG00000027245.12	ENSMUST00000131870.2	724	3	75	-130	65	0	intron_retention	FALSE	canonical	3	4736	junction_1	0	32	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCTCTTATATTGTGT	NA	False	NA	NA	False	NA	NA	NA	121287679	121288917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_121287773_121288126
65044	chr17	-	1452	3	Antisense	novelGene_ENSMUSG00000069729.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	34	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATTCTATGTGTTACAGT	NA	False	NA	NA	False	NA	NA	NA	5103605	5099250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_5100466_5102907_5103034_5103494
65045	chr11	-	1343	8	NNC	ENSMUSG00000017176.18	novel	1344	8	NA	NA	25	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	242.360668998811	2	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCACGCGTCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	100331817	100320179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100320802_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
65046	chr4	+	1044	8	ISM	ENSMUSG00000058183.15	ENSMUST00000080559.13	2926	24	22780	15	-409	-8	3prime_fragment	FALSE	canonical	2	6	junction_3	2.44948974278318	7	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGCTTCAAAGAAGACTTT	NA	False	NA	NA	False	NA	NA	NA	154976872	154979970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_154976977_154977280_154977340_154977688_154977809_154978287_154978422_154978531_154978598_154979053_154979150_154979417_154979495_154979582
65048	chr8	-	715	1	Intergenic	novelGene_1687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACTAAAAAACCGAAAA	NA	False	NA	NA	False	NA	NA	NA	87483524	87482809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_87482800_87483500
65049	chr14	+	1423	1	ISM	ENSMUSG00000021767.20	ENSMUST00000069648.14	7649	17	171042	229	45075	116	mono-exon	FALSE	NA	NA	NA	NA	NA	2	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATGAGATTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	21720894	21722317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_21720900_21722300
65051	chr3	+	948	9	NNC	ENSMUSG00000036632.10	novel	1471	10	NA	NA	19	-377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	215.979997627095	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGGCCTGTTCTCAGTAT	NA	False	NA	NA	False	NA	NA	NA	54643012	54656839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54643071_54646202_54646375_54646682_54646730_54649558_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656132_54656699
65052	chr9	+	1167	2	Intergenic	novelGene_992	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCTGAAGATTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	17467793	17488749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_17467812_17487600
65053	chr11	-	1221	6	FSM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	0	9	0	-9	multi-exon	FALSE	canonical	3	102	junction_5	17.4653943556966	296	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTACTACTCCTTTCTTT	3250	False	NA	NA	False	NA	NA	NA	69556979	69555047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328_69556763_69556845
65054	chr3	+	513	2	FSM	ENSMUSG00000103408.2	ENSMUST00000193964.2	981	2	14	454	14	-454	multi-exon	FALSE	canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTGAAGGGTACCAAACT	9262	False	NA	NA	False	NA	NA	NA	86050077	86052398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_86050513_86052320
65055	chr6	+	1293	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	13	421	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_2	17.5562587763516	5	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTTCACACCAAAATGAC	845	False	NA	NA	False	NA	NA	NA	52079995	52089929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52080017_52082951_52083500_52083750_52083877_52089331
65056	chr1	-	1339	12	NNC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	25	1	at_least_one_novel_splicesite	FALSE	canonical	2	36	junction_10	138.850118371937	322	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTGAGTGACTGGTCCT	NA	False	NA	NA	False	NA	NA	NA	91326452	91303551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318830_91318920_91326372
65058	chrX	-	1062	5	FSM	ENSMUSG00000031171.12	ENSMUST00000147467.2	1047	5	-17	2	15	-2	multi-exon	FALSE	canonical	3	296	junction_2	13.7386316640341	42	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCTTGTGAAGTCAATGT	NA	False	NA	NA	False	NA	NA	NA	8118619	8114762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
65059	chr18	+	1485	1	ISM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	31621	8	4721	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATAATTGCTACCTTTA	NA	False	NA	NA	False	NA	NA	NA	90559898	90561383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_90559900_90561400
65060	chr9	-	1136	5	NNC	ENSMUSG00000032436.18	novel	993	5	NA	NA	51	-4	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	572.561950796593	60	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCAGGTTTCCTTATTG	NA	False	NA	NA	False	NA	NA	NA	114610849	114585910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114586360_114587872_114587955_114590974_114591292_114592286_114592461_114610735
65061	chr15	-	1503	1	Antisense	novelGene_ENSMUSG00000039065.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGGGAGACCGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	31603779	31602276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_31602300_31603800
65062	chrX	-	832	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-38	-44	38	mono-exon	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTGGCTTTCATTAATA	NA	False	NA	NA	False	NA	NA	NA	68649895	68649063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68649100_68649900
65065	chr4	+	1659	3	ISM	ENSMUSG00000028676.18	ENSMUST00000030438.15	2493	7	7162	-185	-255	185	3prime_fragment	FALSE	canonical	3	496	junction_2	409.5	1	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGCGGTAAAATGAAGGT	NA	False	NA	NA	False	NA	NA	NA	135590350	135595878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_135590514_135590833_135590888_135594436
65066	chr19	-	1387	8	NIC	ENSMUSG00000024889.6	novel	1425	8	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	1	9	junction_4	123.357618495237	289	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCTTGGAACCTTGGG	NA	False	NA	NA	False	NA	NA	NA	4675658	4672620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674180_4674712_4674792_4675040_4675125_4675220_4675324_4675460
65067	chr14	-	652	4	NNC	ENSMUSG00000021982.15	novel	1892	10	NA	NA	21981	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	22.9927524813074	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTATGGAACAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	59813304	59805186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59805488_59806396_59806458_59811095_59811289_59813207
65068	chr2	-	2053	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-14	-3	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	18.0765040867973	121	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGCAATGCCTAAGTGT	NA	False	NA	NA	False	NA	NA	NA	59712949	59682710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
65069	chr19	-	1480	8	NNC	ENSMUSG00000025196.5	novel	1828	9	NA	NA	-7127	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	14.6231574803076	42	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	4424	False	NA	NA	False	NA	NA	NA	43964259	43944745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43963919
65070	chr13	-	1004	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	-2	4	-2	-3	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	185	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCCTTTGCCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	55661253	55654589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
65072	chr8	+	712	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	61	7	61	6	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAAAGCTGGGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	123829149	123831976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
65073	chr2	-	1017	8	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	6	0	intron_retention	FALSE	canonical	3	36	junction_3	115.47347075835	54	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	NA	False	NA	NA	NA	26806351	26803394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26803671_26803924_26804088_26804186_26804224_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
65075	chr5	+	1247	2	FSM	ENSMUSG00000053178.6	ENSMUST00000177258.2	1368	2	12	109	12	-109	multi-exon	FALSE	canonical	3	119	junction_1	0	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCACTGGTTCCAGTATG	NA	False	NA	NA	False	NA	NA	NA	4242378	4247542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_4242419_4246335
65076	chr16	+	2094	7	FSM	ENSMUSG00000022793.18	ENSMUST00000023482.13	2304	7	10	200	8	1	multi-exon	TRUE	canonical	3	15	junction_1	6.0184900284226	41	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTGGTCTTGTTTTTTT	3922	False	NA	NA	False	NA	NA	NA	38562635	38589211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
65077	chr1	+	3023	9	FSM	ENSMUSG00000006403.14	ENSMUST00000219033.2	4386	9	604	759	604	-759	multi-exon	FALSE	canonical	1	1	junction_1	2.3418742493994	5	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGGATTAAATGATGTTA	NA	False	NA	NA	False	NA	NA	NA	171078595	171087446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171079039_171080105_171080430_171080655_171080789_171081461_171081633_171083716_171084004_171084096_171084284_171084523_171084700_171085287_171085464_171086320
65079	chr17	+	1051	7	NNC	ENSMUSG00000007041.10	novel	1466	6	NA	NA	266	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	431.052748770057	69	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATCTAGTGTTGTTTTT	1942	False	NA	NA	False	NA	NA	NA	35269207	35277698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274241_35274362_35274385_35277305
65080	chr2	+	1145	12	NNC	ENSMUSG00000027384.7	novel	1166	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_8	93.0171938251603	44	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTATGTTTCCCAGAA	NA	False	NA	NA	False	NA	NA	NA	140012628	140045552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140041284_140041381_140044785_140044870_140045207_140045291_140045451
65081	chr14	+	882	10	NNC	ENSMUSG00000022024.11	novel	7392	13	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	774.387069451275	3	26	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGTGTTCGAGAGAGC	NA	False	NA	NA	False	NA	NA	NA	79825259	79866417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834911_79846390_79846493_79847679_79847788_79857148_79857212_79862320_79862463_79866291
65082	chr7	+	1643	4	NNC	ENSMUSG00000030609.19	novel	4956	4	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	274.271560481376	13	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAACTGGTCCTTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	78545694	78558130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_78545763_78551977_78552283_78555760_78555792_78556891
65083	chr11	+	2229	3	FSM	ENSMUSG00000057219.12	ENSMUST00000035240.7	2260	3	20	11	-11	-11	multi-exon	FALSE	canonical	3	16	junction_2	2.5	36	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCCACTGTATTTGTG	NA	False	NA	NA	False	NA	NA	NA	115366512	115381282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115366854_115366947_115367092_115379538
65084	chr12	-	1597	1	FSM	ENSMUSG00000096953.3	ENSMUST00000181399.2	666	1	-1596	665	-1596	-665	mono-exon	FALSE	NA	NA	NA	NA	NA	77	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGAATTGCACGTCCTCGT	NA	False	NA	NA	False	NA	NA	NA	83999725	83998128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_83998100_83999700
65085	chr2	+	1164	6	NIC	ENSMUSG00000026887.10	novel	2623	7	NA	NA	0	-1058	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	66.6123111744368	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAGATAGAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	36026645	36079601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_36026712_36031457_36031670_36043604_36043724_36049610_36049703_36067126_36067287_36079086
65086	chr17	+	871	5	FSM	ENSMUSG00000075705.14	ENSMUST00000115262.9	886	5	9	6	9	1	multi-exon	FALSE	canonical	3	96	junction_4	30.3685692781204	601	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGTTTCCGTGTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	24955624	24961746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879_24960912_24961283
65091	chr11	+	1452	12	FSM	ENSMUSG00000060600.16	ENSMUST00000072841.12	1454	12	2	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	14.3486688414174	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7115	False	NA	NA	False	NA	NA	NA	70548029	70553339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70548094_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
65093	chr13	+	519	4	Antisense	novelGene_ENSMUSG00000113135.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGAAGATCCCGCCTTC	NA	False	NA	NA	False	NA	NA	NA	65762976	65768076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_65763058_65763697_65763902_65764102_65764193_65767932
65095	chr2	+	2686	1	ISM	ENSMUSG00000062661.7	ENSMUST00000000199.8	4653	8	46961	520	46618	-520	mono-exon	FALSE	NA	NA	NA	NA	NA	9	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGTTGGTCCCATCTTC	NA	False	NA	NA	False	NA	NA	NA	31182795	31185481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31182800_31185500
65096	chr2	+	3412	5	FSM	ENSMUSG00000027661.5	ENSMUST00000029196.5	3544	5	127	5	127	-5	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	5	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGCATATGGTGATTTATA	NA	False	NA	NA	False	NA	NA	NA	165345833	165361832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_165345969_165356345_165357618_165358152_165358276_165359536_165359673_165360086
65097	chr7	+	1560	1	Intergenic	novelGene_2923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCTACAAAAGTTCCAATT	NA	False	NA	NA	False	NA	NA	NA	30537234	30538794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_30537200_30538800
65098	chrX	+	1476	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	0	44	0	-44	multi-exon	FALSE	canonical	3	219	junction_1	64.9935381403413	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAATACATGTCATTAT	6308	False	NA	NA	False	NA	NA	NA	20714816	20719084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
65100	chr14	+	2015	2	FSM	ENSMUSG00000022110.14	ENSMUST00000162723.2	1074	2	155	-1096	21	1096	multi-exon	FALSE	canonical	1	4	junction_1	0	11	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATACATGATTTAATT	NA	False	NA	NA	False	NA	NA	NA	73790226	73795363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_73790338_73793459
65102	chr6	-	2469	2	ISM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	16	6212	16	-6211	5prime_fragment	FALSE	canonical	3	2597	junction_1	0	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCGCTATCCCCCAAACTC	12	True	NA	NA	False	NA	NA	NA	24527553	24524876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_24527317_24527524
65103	chr10	+	1167	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	-10	1	-10	-1	multi-exon	FALSE	canonical	3	275	junction_1	26	614	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCAGGCTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	128583747	128602431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128583868_128601015_128601110_128601478
65104	chr1	+	850	6	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1615.64124730709	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217036_63217550_63217725_63217990_63218062_63218406_63218522_63218616
65105	chr11	+	2581	18	FSM	ENSMUSG00000020319.10	ENSMUST00000020568.10	2792	18	-91	302	-91	-302	multi-exon	FALSE	canonical	2	7	junction_1	3.74350648863466	31	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTGTATGCTTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	21522143	21848687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_21522371_21602225_21602311_21609994_21610043_21610888_21610940_21613996_21614068_21614325_21614386_21639567_21639683_21641769_21641904_21645113_21645306_21661461_21662072_21671102_21671292_21674512_21674637_21698877_21698942_21763359_21763463_21807446_21807610_21834983_21835088_21836259_21836289_21848475
65106	chr7	+	2146	3	NNC	ENSMUSG00000095922.2	novel	1140	3	NA	NA	-2421	791	intron_retention	FALSE	canonical	0	0	junction_1	0	1	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTTTGTGCCCTCCCCT	NA	False	NA	NA	False	NA	NA	NA	14972775	14977704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_14972820_14975151_14975740_14976190
65107	chr7	+	960	4	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	-11	-4426	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	8.98146239020499	3	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATAAAATGACATTTG	NA	False	NA	NA	False	NA	NA	NA	106842217	106895177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106894609
65108	chr8	+	1061	7	FSM	ENSMUSG00000031860.18	ENSMUST00000156319.8	1101	7	29	11	4	-11	multi-exon	FALSE	canonical	3	3	junction_2	13.7446959466795	93	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTTTGCATTCCAGTGT	2248	False	NA	NA	False	NA	NA	NA	70285315	70324931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70285502_70311729_70311804_70317547_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
65109	chr9	-	3440	1	Intergenic	novelGene_1149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGGCCGCGCAGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	100431805	100428365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_100428400_100431800
65110	chr8	-	901	3	FSM	ENSMUSG00000058833.12	ENSMUST00000138196.2	542	3	-264	-95	54	-4	multi-exon	FALSE	canonical	3	841	junction_1	23	45	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGCAGCTTTCCCATCA	NA	False	NA	NA	False	NA	NA	NA	70959022	70956952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70957160_70957633_70957711_70958405
65112	chr5	-	1396	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_6	91.0541440180355	210	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5319	False	NA	NA	False	NA	NA	NA	143314961	143302243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143312061_143314145_143314326_143314920
65114	chr4	-	2804	1	NIC	ENSMUSG00000038047.19	novel	6158	17	NA	NA	2113	-1466	mono-exon	FALSE	NA	NA	NA	NA	NA	4	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTTTAGATAATGTGA	NA	False	NA	NA	False	NA	NA	NA	86528143	86525339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_86525300_86528100
65115	chr18	+	988	1	Antisense	novelGene_ENSMUSG00000024456.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGCAGGGTGGAGGTGA	NA	False	NA	NA	False	NA	NA	NA	37976661	37977649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_37976700_37977600
65116	chr11	-	2214	8	ISM	ENSMUSG00000050965.15	ENSMUST00000059595.11	8409	17	359871	4877	-4418	-87	3prime_fragment	FALSE	canonical	3	12	junction_7	3.20076521462973	28	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAATAACGAGTTAATCTA	NA	False	NA	NA	False	NA	NA	NA	107874883	107829089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_107830507_107842291_107842433_107844467_107844576_107852398_107852480_107869059_107869199_107870028_107870092_107872436_107872529_107874710
65117	chr7	-	1149	1	Antisense	novelGene_ENSMUSG00000037563.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAAAAATAGGGG	1590	False	NA	NA	False	NA	NA	NA	28053614	28052465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_28052500_28053600
65118	chr18	-	921	9	NNC	ENSMUSG00000041840.9	novel	1003	9	NA	NA	4	-20	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_6	441.848514057703	7	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGTTTGCATATGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	77855476	77845288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849760_77851772_77851909_77854563_77854739_77855419
65119	chr7	+	1284	10	NNC	ENSMUSG00000036528.17	novel	3827	26	NA	NA	5549	9376	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGAGATGCCTGACTTA	NA	False	NA	NA	False	NA	NA	NA	107347661	107357166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_107347963_107350373_107350474_107351537_107351623_107352421_107352501_107353046_107353183_107353910_107354016_107356115_107356191_107356391_107356522_107356789_107356912_107357015
65121	chr8	-	1693	4	Antisense	novelGene_ENSMUSG00000031562.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	91	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATCCGTGACCACGGATC	NA	False	NA	NA	False	NA	NA	NA	48594650	48563125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_48563283_48564697_48564819_48564996_48565138_48593376
65122	chr14	+	626	4	NNC	ENSMUSG00000016831.13	novel	2997	5	NA	NA	-66	-1889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	270.630539460884	122	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52516955	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523314_52531767
65125	chr17	+	2855	2	Intergenic	novelGene_66	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	60	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGTTTGGGGGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	21949648	21971350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_21949747_21968593
65126	chr14	+	1580	10	NNC	ENSMUSG00000021895.11	novel	3198	14	NA	NA	-34	-8987	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	14.1115485496502	6	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTCCTAACCTATAAAACA	NA	False	NA	NA	False	NA	NA	NA	26836821	27116278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26837273_26874918_26875013_26930845_26930913_26987479_26987543_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889
65128	chr2	+	1969	7	Antisense	novelGene_ENSMUSG00000005973.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	75	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGTCCCCTCCCCAGCGA	NA	False	NA	NA	False	NA	NA	NA	105217277	105229602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_105217839_105217890_105218369_105219317_105219522_105222314_105222380_105223936_105224119_105225027_105225220_105229315
65131	chr9	-	658	1	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	-24	426	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGGAATTGGTAACATTCA	NA	False	NA	NA	False	NA	NA	NA	44324432	44323774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44323800_44324400
65133	chr14	-	3357	1	Intergenic	novelGene_513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGCTTAGAGTAGAGGGG	NA	False	NA	NA	False	NA	NA	NA	10725005	10721648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_10721600_10725000
65134	chr5	-	926	4	ISM	ENSMUSG00000035325.17	ENSMUST00000182433.8	1195	7	7602	-1	-1612	0	3prime_fragment	FALSE	canonical	3	742	junction_2	33.0689515339624	51	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	100513741	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589
65135	chr9	+	647	4	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1430	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8491.35412574984	1	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082104	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64082936_64085504
65137	chr9	+	1577	10	NIC	ENSMUSG00000038775.15	novel	1645	11	NA	NA	15	-5	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.59982363037962	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATCGGGTGTGGCACGT	NA	False	NA	NA	False	NA	NA	NA	118892564	118900389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_118892670_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
65138	chr2	-	1244	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	251	5	-11	0	multi-exon	FALSE	canonical	3	1052	junction_5	244.745255316625	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGTGTGCTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	155668594	155661756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
65139	chr7	-	1755	3	NIC	ENSMUSG00000002968.10	novel	3693	18	NA	NA	683	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	31	28	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTATCTTTCTGGCCGTG	4256	False	NA	NA	False	NA	NA	NA	44530049	44526196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44527715_44529350_44529529_44529990
65140	chr5	+	2486	8	FSM	ENSMUSG00000047221.6	ENSMUST00000056045.5	3027	8	449	92	406	-92	multi-exon	FALSE	canonical	1	21	junction_1	12.2873753029984	33	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTTCTAAATATGAGTC	NA	False	NA	NA	False	NA	NA	NA	21630404	21687030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_21630575_21634721_21634832_21638688_21638782_21643697_21643837_21652313_21652356_21660779_21660876_21664156_21664292_21685329
65142	chr2	+	1445	12	FSM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	238	59	231	-59	multi-exon	FALSE	canonical	3	1013	junction_10	106.078950794457	14	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCCCTTCATCCCTTT	NA	False	NA	NA	False	NA	NA	NA	172842147	172857473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
65143	chr4	+	2535	1	Intergenic	novelGene_1998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAAGAGATTGGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	140292694	140295229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_140292700_140295200
65145	chr2	+	1106	8	NNC	ENSMUSG00000051154.12	novel	935	8	NA	NA	-2	-10	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	147.313493292782	1437	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGCGGCATTCTGTTTG	68	False	NA	NA	False	NA	NA	NA	18677241	18681031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680487
65146	chr17	+	1232	10	ISM	ENSMUSG00000041057.11	ENSMUST00000234560.2	2410	19	365	16442	45	825	internal_fragment	FALSE	canonical	3	1341	junction_7	127.049518877143	1	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGCCAATCAAGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	71923254	71948342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281
65147	chr6	-	834	1	Intergenic	novelGene_4212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAACCAAACCCCCAAAA	8149	False	NA	NA	False	NA	NA	NA	97170980	97170146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_97170100_97171000
65149	chr5	+	637	4	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1163	-5	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_2	947.073738769409	789	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTGGTGATTGTT	NA	False	NA	NA	False	NA	NA	NA	115603157	115612776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115603279_115604200_115604380_115610051_115610180_115612567
65151	chr7	-	494	1	Intergenic	novelGene_2872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGCCCAGCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	5068548	5068054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_5068100_5068500
65153	chr19	+	1674	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	-150	5	-150	-5	multi-exon	FALSE	canonical	3	94	junction_1	5.5	87	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTTGCCTAGCACATGA	NA	False	NA	NA	False	NA	NA	NA	41970051	42023077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41970448_42020327_42020556_42022027
65154	chr8	+	1082	9	ISM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	5142	16	5077	4	3prime_fragment	FALSE	canonical	3	211	junction_5	29.2016159655592	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTGAGACAGGAAATTTG	NA	False	NA	NA	False	NA	NA	NA	11552709	11563271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
65155	chr2	+	579	5	NIC	ENSMUSG00000074884.13	novel	695	6	NA	NA	0	123	combination_of_known_splicesites	FALSE	canonical	3	147	junction_2	2161.36542491084	63	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCTCTTATATTGTGT	NA	False	NA	NA	False	NA	NA	NA	121279848	121288917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_121279923_121280455_121280565_121288126_121288183_121288472_121288525_121288629
65156	chr12	+	3403	2	FSM	ENSMUSG00000037638.6	ENSMUST00000169593.2	3478	2	47	28	9	-28	multi-exon	FALSE	canonical	1	1	junction_1	0	2	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTGTAATAAAGCCAACC	393	False	NA	NA	False	NA	NA	NA	112645320	112649153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_112645380_112645809
65161	chr11	-	2583	20	NNC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	5	-424	intron_retention	FALSE	canonical	1	1	junction_14	13.0876017115267	2	132	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGGCAGGTAAAGTAACC	9578	False	NA	NA	False	NA	NA	NA	69786360	69772816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780563_69780645_69780691_69780824_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
65162	chr2	-	929	2	NNC	ENSMUSG00000078956.4	novel	1437	2	NA	NA	-36230	-470	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	4	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATTTATGCAATGAGTGG	NA	False	NA	NA	False	NA	NA	NA	160498121	160448385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_160449243_160498049
65163	chr2	-	1093	1	Intergenic	novelGene_2760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACGATAGCTTATTTT	NA	False	NA	NA	False	NA	NA	NA	160447400	160446307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_160446300_160447400
65164	chr1	-	1278	9	Antisense	novelGene_ENSMUSG00000026197.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	357	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGCAGCCCCTACTCCTC	NA	False	NA	94	True	NA	NA	NA	75148264	75145331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_75145550_75145827_75145922_75146141_75146274_75146406_75146560_75147009_75147102_75147180_75147243_75147328_75147396_75147617_75147690_75147876
65165	chr13	+	1133	8	NIC	ENSMUSG00000021645.17	novel	1222	9	NA	NA	-17	-13	combination_of_known_splicesites	FALSE	canonical	2	5	junction_7	255.364964915163	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCTTTTTTGAAATCTT	NA	False	NA	NA	False	NA	NA	NA	100261384	100274185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100273888
65166	chr10	-	1666	1	Intergenic	novelGene_3401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAAACATTAGCACTTTT	9756	False	NA	NA	False	NA	NA	NA	17789684	17788018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_17788000_17789700
65168	chr16	-	1622	10	NNC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	-4	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	98.3592558424297	426	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGTTGATAATAAATCTT	NA	False	NA	NA	False	NA	NA	NA	18161774	18118719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18145446_18145608_18161758
65170	chr12	+	1266	3	FSM	ENSMUSG00000037466.14	ENSMUST00000199382.2	624	3	-67	-575	-32	575	multi-exon	FALSE	canonical	3	205	junction_2	16.5	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGAGGATTGGCAGGGT	NA	False	NA	NA	False	NA	NA	NA	113120008	113121784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_113120192_113120294_113120374_113120780
65171	chr19	+	1113	10	NNC	ENSMUSG00000042729.12	novel	1078	11	NA	NA	-32	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	361.550911668599	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGACCTTTTGTGATG	931	False	NA	NA	False	NA	NA	NA	8713158	8717987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715503_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
65172	chr10	+	509	1	NIC	ENSMUSG00000100550.3	novel	642	3	NA	NA	-3320	-4423	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGTACA	NA	False	NA	NA	False	NA	NA	NA	95194139	95194648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_95194100_95194600
65174	chr16	-	1874	1	Intergenic	novelGene_3629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCAGACCATTGCCAACT	NA	False	NA	NA	False	NA	NA	NA	29754047	29752173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_29752200_29754000
65175	chr17	-	1094	1	Intergenic	novelGene_134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGTCAGCCCATCAGG	NA	False	NA	NA	False	NA	NA	NA	33090638	33089544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_33089500_33090600
65176	chr9	+	2077	11	ISM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	12	6683	12	-6683	5prime_fragment	FALSE	canonical	3	254	junction_4	22.3159136044214	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCACTCCCCACGGCCAA	NA	False	NA	NA	False	NA	NA	NA	48966924	48983389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881
65177	chr11	-	217	1	Intergenic	novelGene_2413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCCATCTGCAGACAACCA	NA	False	NA	NA	False	NA	NA	NA	79292615	79292398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_79292400_79292600
65179	chr8	+	1668	3	NIC	ENSMUSG00000055835.11	novel	1930	4	NA	NA	-6	-19	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	43	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATACCCAGCTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	112370131	112397621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_112370245_112385017_112385074_112396122
65180	chr7	-	1040	8	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	10	-2055	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	11.8528391501095	15	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAATGGGTGTTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	107357193	107351226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356818_107356912_107357164
65181	chr9	-	788	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	37	33	-17	6	multi-exon	FALSE	canonical	3	701	junction_7	157.218553197095	42	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAGGCAAGAAGAATAAAC	6314	False	NA	NA	False	NA	NA	NA	57065578	57062355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
65182	chr16	+	1320	1	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	-2817	33	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCACTTGGGAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	13649128	13650448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_13649100_13650400
65183	chr5	+	2703	9	ISM	ENSMUSG00000029186.13	ENSMUST00000031081.11	3139	10	6806	30	-6222	-30	3prime_fragment	FALSE	canonical	3	134	junction_1	13.2894460004923	16	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAGGAATAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	52905721	52926652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_52905848_52907949_52908151_52908763_52908896_52910437_52910592_52911978_52912047_52914207_52914308_52918215_52918350_52919773_52919834_52924924
65184	chr1	+	842	6	NNC	ENSMUSG00000033793.13	novel	1811	13	NA	NA	0	29	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	224.407130011504	14	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCTTAAATTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	5153354	5232671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163637_5220234_5220285_5232327
65186	chr4	+	3651	15	NNC	ENSMUSG00000028758.13	novel	3453	15	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.50305935256218	13	114	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAATAAGCGCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	137989805	138029273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137990045_137996255_137996403_137997156_137997259_138002277_138002468_138005106_138005560_138008667_138008778_138013742_138013888_138015239_138015797_138016551_138016636_138018679_138018910_138019424_138019657_138021022_138021282_138023502_138023574_138025519_138025638_138028559
65187	chr1	+	1704	1	Intergenic	novelGene_413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCCAGCCCTAGCAATCT	NA	False	NA	NA	False	NA	NA	NA	90997112	90998816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_90997100_90998800
65188	chr1	+	1398	4	FSM	ENSMUSG00000055184.5	ENSMUST00000068613.5	2191	4	-44	837	-44	-837	multi-exon	FALSE	canonical	3	32	junction_2	3.29983164553722	104	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAACGTTTACTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	131455596	131466773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131456591_131458391_131458470_131461546_131461672_131466572
65190	chr3	+	1171	7	NNC	ENSMUSG00000027774.17	novel	1971	14	NA	NA	-5	264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	171.982234224611	23	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATATATAATATTATATA	NA	False	NA	NA	False	NA	NA	NA	67337443	67382401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347500_67382115
65191	chr8	-	2015	1	Genic_Genomic	ENSMUSG00000040028.11	novel	NA	NA	NA	NA	25821	598	mono-exon	FALSE	NA	NA	NA	NA	NA	22	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATGTGATGGTGTAGGG	NA	False	NA	NA	False	NA	NA	NA	4336798	4334783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_4334800_4336800
65195	chr14	-	1736	8	FSM	ENSMUSG00000034194.19	ENSMUST00000118374.8	1726	8	-10	0	-10	0	multi-exon	FALSE	canonical	3	88	junction_7	41.9007573844168	527	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTGCGTCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	69945043	69934755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
65198	chr19	-	1087	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	597	1319	582	-1319	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	NA	False	NA	NA	NA	10926033	10920163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
65199	chr17	+	724	3	Antisense	novelGene_ENSMUSG00000072082.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCGCTTTAGACCGCTC	8154	False	NA	NA	False	NA	NA	NA	24463022	24470299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24463559_24468222_24468380_24470268
65200	chr16	-	1524	12	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	996	3	NA	NA	19	2	multi-exon	FALSE	canonical	0	0	junction_9	423.667380838762	36	47	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTTTAGTATTTAATAT	6285	False	NA	NA	False	NA	NA	NA	38370565	38337019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38337326_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366241_38368799_38368944_38369704_38369796_38370444
65201	chr6	+	2095	7	FSM	ENSMUSG00000056091.13	ENSMUST00000069994.11	2258	7	121	42	-44	-42	multi-exon	FALSE	canonical	3	38	junction_5	8.15304987242334	26	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAATAAAAGCTTTTG	NA	False	NA	NA	False	NA	NA	NA	72074696	72131513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72074767_72105247_72105372_72109035_72109148_72119123_72119468_72124052_72124240_72126002_72126162_72130414
65202	chr5	-	816	1	Antisense	novelGene_ENSMUSG00000107254.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACAGCAACACTTTCTAG	680	False	NA	NA	False	NA	NA	NA	66069295	66068479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_66068500_66069300
65204	chr11	-	1337	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-71	-6	combination_of_known_junctions	FALSE	canonical	3	41	junction_7	55.2692851188707	257	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTAGTTGCATTGATTC	NA	False	NA	NA	False	NA	NA	NA	113600914	113589003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600647
65205	chr4	-	2297	11	NNC	ENSMUSG00000040387.17	novel	7143	11	NA	NA	66	12	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	2.96816441593117	15	27	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAATAATTTTCTAA	75	False	NA	NA	False	NA	NA	NA	24851020	24617260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_24617547_24626896_24626992_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682236_24708952_24709052_24743857_24743966_24792616_24792798_24800805_24800891_24850737
65206	chr2	-	978	1	Antisense	novelGene_ENSMUSG00000084013.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGGTCCAGGAAAGCCGA	6594	False	NA	NA	False	NA	NA	NA	170127983	170127005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_170127000_170128000
65207	chr8	+	1519	6	NNC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.822578481376	115	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACAGTCACTAGAAGTGC	NA	False	NA	NA	False	NA	NA	NA	75820249	75827208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513_75826766_75826805
65208	chr7	+	841	6	NNC	ENSMUSG00000008036.12	novel	504	6	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	295.007796507143	797	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTGTCTGAGCCCTC	NA	False	NA	NA	False	NA	NA	NA	16472380	16483217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_16472464_16475803_16475857_16477143_16477294_16481185_16481300_16482613_16482674_16482836
65209	chr9	-	962	10	NIC	ENSMUSG00000090626.10	novel	1264	11	NA	NA	2	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	69.9032841560571	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTGGTGAAATAAACAGAAT	7878	False	NA	NA	False	NA	NA	NA	72399241	72368382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_72368561_72369137_72369273_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
65210	chr16	-	1944	8	ISM	ENSMUSG00000022818.14	ENSMUST00000182741.2	1497	9	720	-623	21	517	3prime_fragment	FALSE	canonical	2	4	junction_2	1.39970842444753	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTAAGTGGAAATTAAAAT	NA	False	NA	NA	False	NA	NA	NA	20134780	20127902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_20128732_20128831_20128974_20130978_20131167_20131777_20131920_20132477_20132652_20132947_20133109_20133704_20133855_20134622
65213	chr9	+	2122	11	ISM	ENSMUSG00000034135.16	ENSMUST00000153152.2	5465	21	12	21338	12	-35	5prime_fragment	FALSE	canonical	3	79	junction_6	10.2586548825857	34	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGAGGGAAGTTGAAATA	NA	False	NA	NA	False	NA	NA	NA	46066688	46114148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107169_46107281_46107392_46109444_46109599_46109849_46110006_46113297
65214	chr9	-	730	3	NNC	ENSMUSG00000079427.11	novel	801	3	NA	NA	19	-12	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_1	153	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATAAAATCCTATTTAGAA	NA	False	NA	NA	False	NA	NA	NA	88601847	88570670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88571039_88597576_88597803_88601711
65215	chr12	+	2681	12	FSM	ENSMUSG00000020646.18	ENSMUST00000221952.2	6792	12	-10	4121	-10	-10	multi-exon	FALSE	canonical	3	26	junction_3	37.4053074415034	3	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCCATTAAACTCTTGT	NA	False	NA	NA	False	NA	NA	NA	24881597	25010275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
65216	chr1	+	1556	7	NNC	ENSMUSG00000026520.9	novel	1580	7	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	538.246742261907	1	95	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTTGAGTTCTAGTCT	16	False	NA	NA	False	NA	NA	NA	180731857	180735643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180732096_180732308_180732380_180733438_180733619_180733739_180733950_180734159_180734253_180734354_180734519_180735043
65217	chr7	+	1029	10	NNC	ENSMUSG00000003423.16	novel	1077	10	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	124.267433632985	596	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGCTCCAGACAATGATG	NA	False	NA	NA	False	NA	NA	NA	44803737	44809485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809216_44809365
65218	chr11	-	641	2	ISM	ENSMUSG00000020530.15	ENSMUST00000134043.2	324	3	4357	-402	4357	402	3prime_fragment	FALSE	canonical	3	79	junction_1	0	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGGCTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	84744963	84742805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_84743363_84744879
65219	chr9	-	2180	13	FSM	ENSMUSG00000039632.14	ENSMUST00000044926.6	2197	13	15	2	15	-2	multi-exon	FALSE	canonical	1	2	junction_6	2.13924960883224	28	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGGTATTCACCTCT	4219	False	NA	NA	False	NA	NA	NA	21913915	21901168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21901541_21901692_21901778_21902097_21902254_21902903_21903061_21903143_21903305_21904167_21904321_21904833_21904957_21906108_21906235_21906322_21906425_21906503_21906675_21909181_21909260_21909340_21909463_21913541
65220	chr19	-	1573	3	NNC	ENSMUSG00000097930.3	novel	2057	7	NA	NA	18083	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	9	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCACAGTTCTGTTGGATT	NA	False	NA	NA	False	NA	NA	NA	23035134	23014757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23015996_23028918_23029070_23034950
65221	chr3	+	1188	1	NIC	ENSMUSG00000003382.19	novel	5309	5	NA	NA	3269	-957	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATCCACCTGCTCAGGAG	369	False	NA	NA	False	NA	NA	NA	87436193	87437381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_87436200_87437400
65222	chr18	+	2598	3	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26652	-24761	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	632	3	152	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCAATGTTTGTTTTTGCC	6433	False	NA	-89	True	NA	NA	NA	77126251	77209872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77207607_77207659_77207751
65224	chrX	-	1387	1	ISM	ENSMUSG00000031258.5	ENSMUST00000033611.5	2876	3	11496	3	11496	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTACTGTCCTGGGTA	NA	False	NA	NA	False	NA	NA	NA	133051181	133049794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_133049800_133051200
65225	chr11	+	1126	3	NNC	ENSMUSG00000020888.17	novel	2968	15	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	262.5	7	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7104	False	NA	NA	False	NA	NA	NA	69891389	69900937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69891853_69895630_69895701_69900344
65226	chr7	-	1147	7	NIC	ENSMUSG00000036845.13	novel	998	9	NA	NA	0	-6	intron_retention	FALSE	canonical	3	235	junction_6	18.2025639219681	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAGTTGACAAATCTCA	4892	False	NA	NA	False	NA	NA	NA	30259064	30254875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30255034_30255112_30255415_30256282_30256450_30256524_30256720_30257050_30257102_30257307_30257384_30258866
65227	chr4	+	1053	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-51	3411	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.85228720041	10	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGATATTCTGATCTTT	NA	False	NA	NA	False	NA	NA	NA	146586432	146627263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146626770
65228	chr2	-	1655	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80973	-906	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	48	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATACTGTTTACCCTCA	NA	False	NA	NA	False	NA	NA	NA	33916768	33909206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_33910509_33915810_33915970_33916574
65229	chr5	+	1088	7	NIC	ENSMUSG00000029177.10	novel	1007	7	NA	NA	-1	-5	combination_of_known_junctions	FALSE	canonical	2	3	junction_2	786.688135300274	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCCGTGGCAGTCCCG	9262	False	NA	NA	False	NA	NA	NA	30824316	30831748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_30824458_30824924_30825032_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
65230	chr13	+	3502	2	Antisense	novelGene_ENSMUSG00000014164.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	5	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAGTAAATAAATAAATTA	NA	False	NA	NA	False	NA	NA	NA	58171418	58175616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_58171531_58172226
65231	chr4	-	2239	6	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	28	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	17.91758912354	24	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTCTTATGAATTCACT	6864	False	NA	NA	False	NA	NA	NA	120808868	120787347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120788704_120791529_120791626_120792263_120792391_120804563_120804767_120806528_120806758_120808640
65234	chr9	-	3801	13	ISM	ENSMUSG00000043154.16	ENSMUST00000075941.12	6786	14	38264	2820	-1694	-21	3prime_fragment	FALSE	canonical	3	23	junction_1	6.16216051577872	4	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTAACTTCAAGCCTTT	NA	False	NA	NA	False	NA	NA	NA	101090730	100985102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_100985169_101002221_101002329_101003507_101003627_101004095_101004272_101021509_101021600_101022673_101022723_101025780_101025938_101030986_101031074_101052526_101052602_101057533_101057637_101063131_101063236_101071357_101071625_101088329
65235	chr9	+	1636	4	ISM	ENSMUSG00000032245.13	ENSMUST00000138276.2	560	5	1052	-1274	34	-21	3prime_fragment	FALSE	canonical	3	55	junction_2	3.55902608401044	57	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGTTTTGAAGCCCAGC	959	False	NA	NA	False	NA	NA	NA	62754348	62759267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_62754437_62754866_62754923_62756390_62756514_62757898
65236	chr1	+	2064	10	NNC	ENSMUSG00000042901.11	novel	4279	10	NA	NA	18	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	85.1261953560857	1	129	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGTGTAACAAGGCATAAA	NA	False	NA	NA	False	NA	NA	NA	183078888	183104428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097519_183097638_183099746_183099870_183103138_183103246_183103343
65237	chr10	-	2237	1	Intergenic	novelGene_3531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGTGGCTATGAATCCCA	NA	False	NA	NA	False	NA	NA	NA	115064326	115062089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_115062100_115064300
65238	chr11	-	859	10	NNC	ENSMUSG00000018537.17	novel	811	5	NA	NA	0	-98	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	70.3514984441222	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGCTACTACTCAGATT	NA	False	NA	NA	False	NA	NA	NA	97590467	97581451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97581507_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
65239	chr16	-	1884	8	FSM	ENSMUSG00000022818.14	ENSMUST00000023513.12	2720	8	107	729	107	554	multi-exon	TRUE	canonical	0	0	junction_7	2.06031501455085	12	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACCTGCTAAATTCCTA	NA	False	NA	NA	False	NA	NA	NA	20141708	20127865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20128732_20128831_20128974_20130978_20131167_20131777_20131920_20132477_20132652_20132947_20133109_20133704_20133855_20141647
65240	chr6	+	975	5	NNC	ENSMUSG00000067338.7	novel	1775	5	NA	NA	260	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	540.665562062168	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCTTCCCTGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	145561742	145567205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145561816_145563958_145564182_145564457_145564607_145564908_145565284_145567050
65242	chr10	-	2149	11	FSM	ENSMUSG00000034591.6	ENSMUST00000039956.6	4742	11	67	2526	67	-2526	multi-exon	FALSE	canonical	0	0	junction_1	1.35646599662505	2	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTTTTGTAGAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	83173679	83069237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_83069615_83090646_83090796_83091874_83092007_83117233_83117314_83119585_83119734_83133017_83133165_83137025_83137171_83140167_83140240_83149278_83149387_83151918_83152654_83173623
65244	chr8	+	1353	10	ISM	ENSMUSG00000010154.8	ENSMUST00000212404.2	2158	14	7416	1	7416	-1	3prime_fragment	FALSE	canonical	3	49	junction_2	8.86663881922667	53	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATACATTGTCTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	124084405	124096253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_124084469_124084848_124084973_124086080_124086251_124086811_124087002_124087988_124088105_124089757_124089893_124090061_124090130_124093574_124093603_124095416_124095533_124095910
65245	chr12	+	2172	1	Antisense	novelGene_ENSMUSG00000021054.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTGTCTCCTCGGGATGT	NA	False	NA	NA	False	NA	NA	NA	75761081	75763253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_75761100_75763300
65246	chr1	-	1439	5	Antisense	novelGene_ENSMUSG00000042751.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGCTCTCTTTCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	152992483	152969262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_152969307_152969798_152969860_152987887_152987990_152988125_152988198_152991323
65249	chr6	-	1743	9	FSM	ENSMUSG00000054474.16	ENSMUST00000160918.8	2077	9	102	232	-6	0	multi-exon	TRUE	canonical	1	2	junction_8	2.47171499166065	35	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGGTGTTTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	71121321	71105381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71121274
65250	chr2	+	2222	1	Intergenic	novelGene_2603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCTTAGTAAAGAAGACCC	1079	False	NA	NA	False	NA	NA	NA	31463248	31465470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_31463200_31465500
65251	chr3	+	1438	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	51	0	4	0	multi-exon	FALSE	canonical	3	743	junction_2	141.598022585063	1	62	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	89084830	89090072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
65253	chr10	-	2584	1	Genic_Genomic	ENSMUSG00000028630.10	novel	NA	NA	NA	NA	10114	1	mono-exon	FALSE	NA	NA	NA	NA	NA	28	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTCACCCCTTTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	118694090	118691506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_118691500_118694100
65254	chr3	+	967	6	Antisense	novelGene_ENSMUSG00000037531.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATGGCCTCCTCTAGC	8526	False	NA	NA	False	NA	NA	NA	32781650	32791136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_32781861_32782575_32782676_32785307_32785408_32787738_32787801_32788259_32788409_32790790
65255	chr17	-	2409	23	ISM	ENSMUSG00000007035.16	ENSMUST00000007250.14	2886	24	654	0	148	0	3prime_fragment	FALSE	canonical	1	1	junction_5	4.53817599067225	32	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTCCTTAGGTCACCC	2547	False	NA	NA	False	NA	NA	NA	35264944	35247580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_35247829_35248171_35248246_35248628_35248767_35248853_35248998_35249176_35249252_35249584_35249735_35250123_35250251_35250329_35250520_35250654_35250743_35251316_35251398_35251735_35251846_35252198_35252272_35252565_35252695_35257381_35257445_35258176_35258316_35260445_35260492_35261073_35261157_35262704_35262741_35263000_35263111_35263292_35263415_35264089_35264153_35264269_35264351_35264905
65256	chr11	-	774	3	FSM	ENSMUSG00000051355.19	ENSMUST00000159081.8	4508	3	123	3611	-7	12	multi-exon	FALSE	canonical	3	2089	junction_1	53.5	6482	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAACCTCTCAAAGTCCA	NA	False	NA	NA	False	NA	NA	NA	22932259	22849746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_22850058_22906410_22906693_22932078
65257	chr11	+	1762	1	Intergenic	novelGene_2453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCTGCTTCCTGGCTC	NA	False	NA	NA	False	NA	NA	NA	90151549	90153311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_90151500_90153300
65258	chr11	+	691	1	Intergenic	novelGene_2454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTACAGATGGGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	90153509	90154200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_90153500_90154200
65259	chr1	-	1317	1	Intergenic	novelGene_497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTTAGGTCAAATAAACAA	NA	False	NA	NA	False	NA	NA	NA	184544973	184543656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_184543700_184545000
65260	chr6	+	1624	4	FSM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	123	17	102	-17	multi-exon	FALSE	canonical	3	52	junction_1	6.37704215656966	101	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTGTGTAGCAGCTAAA	NA	False	NA	NA	False	NA	NA	NA	134618025	134688133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134618221_134621291_134621436_134662926_134663085_134687006
65261	chrX	+	1461	4	FSM	ENSMUSG00000015217.12	ENSMUST00000132145.2	847	4	267	-881	267	-22	multi-exon	FALSE	canonical	3	753	junction_3	86.723058576649	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTATTACAACGGCCTA	NA	False	NA	NA	False	NA	NA	NA	70601655	70604260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_70601814_70602038_70602179_70602703_70602879_70603272
65262	chr17	-	1384	5	ISM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	9	10830	9	-10830	5prime_fragment	FALSE	canonical	3	301	junction_4	30.5971812427223	21	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGAAGTAATTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	87332825	87315513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
65264	chr9	+	975	1	Intergenic	novelGene_1119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATTAAAAAAAATCATTTC	5970	False	NA	NA	False	NA	NA	NA	78435038	78436013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_78435000_78436000
65265	chr6	-	1699	12	Antisense	novelGene_ENSMUSG00000030204.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	109	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCGGAAGTGGGGCCGAG	NA	False	NA	NA	False	NA	NA	NA	135000705	134988593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_134988691_134989263_134989358_134992155_134992346_134992537_134992613_134992788_134992902_134993542_134993614_134994080_134994211_134995018_134995170_134995943_134996070_134997574_134997650_134998411_134998556_135000272
65266	chr19	-	2818	16	FSM	ENSMUSG00000060224.5	ENSMUST00000076505.4	3119	16	302	-1	-1	1	multi-exon	FALSE	canonical	1	1	junction_10	3.5863940416834	19	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCGGTCCAGCCTTGGCC	NA	False	NA	NA	False	NA	NA	NA	42740912	42714295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_42715429_42716095_42716217_42718060_42718168_42719757_42719913_42722159_42722317_42722521_42722595_42723861_42723997_42724334_42724477_42726527_42726626_42726709_42726772_42728773_42728928_42730946_42731103_42735785_42735860_42735935_42736030_42737822_42737843_42740775
65267	chr6	+	1078	9	NNC	ENSMUSG00000025609.16	novel	11395	18	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	214.864346739984	10	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATATTTTTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	31375766	31484905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_31375890_31395865_31395936_31403648_31403736_31466378_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
65269	chr12	-	1428	13	FSM	ENSMUSG00000020566.20	ENSMUST00000221129.2	1425	13	0	-3	0	0	multi-exon	FALSE	canonical	3	13	junction_8	6.04841577054135	95	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTCTTGTGTTCTAAT	NA	False	NA	NA	False	NA	NA	NA	17374731	17334722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17347822_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
65271	chr9	+	2435	8	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	16451	-14	intron_retention	FALSE	canonical	3	10	junction_5	23.6125182987364	1	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGTAGTTTTTAACCTT	NA	False	NA	NA	False	NA	NA	NA	78319509	78330855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78327870_78327959_78328979_78329121_78330733
65272	chr12	+	1852	3	NNC	ENSMUSG00000042063.12	novel	1958	3	NA	NA	12	-11	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	21	1	90	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCCATAGTCAAAAACTTG	NA	False	NA	NA	False	NA	NA	NA	116011407	116024201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_116011487_116018341_116018438_116022524
65274	chr18	-	1346	2	FSM	ENSMUSG00000101406.2	ENSMUST00000188118.2	1085	2	337	-598	337	598	multi-exon	FALSE	canonical	0	0	junction_1	0	27	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTAGCCTCCTCTTTTA	7221	False	NA	NA	False	NA	NA	NA	12637146	12633648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_12634942_12637093
65275	chr8	-	2190	2	ISM	ENSMUSG00000031983.8	ENSMUST00000034464.8	3307	4	24236	62	24236	-62	3prime_fragment	FALSE	canonical	3	262	junction_1	0	41	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTGTAATTTGGTCCTA	NA	False	NA	NA	False	NA	NA	NA	125365872	125362556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_125364704_125365829
65277	chr14	+	803	7	NIC	ENSMUSG00000022111.10	novel	903	9	NA	NA	-2	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	2030.90272757926	7	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTATTTTGTGTTGTTTT	137	False	NA	NA	False	NA	NA	NA	101891449	101933555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101932594_101932654_101933337
65281	chr8	-	745	1	Intergenic	novelGene_1599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACATATGAATTATTTAGT	NA	False	NA	NA	False	NA	NA	NA	22969979	22969234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_22969200_22970000
65282	chr9	+	1228	6	FSM	ENSMUSG00000023277.14	ENSMUST00000217523.2	819	6	1	-410	1	0	multi-exon	FALSE	canonical	3	299	junction_5	34.8906864363543	119	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	106089388	106092588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
65284	chr2	-	2251	1	ISM	ENSMUSG00000054057.3	ENSMUST00000066163.3	3217	2	10288	6	1311	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	33	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACAAATAAAATAGCCTAC	NA	False	NA	NA	False	NA	NA	NA	18032260	18030009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_18030000_18032300
65285	chr14	+	2034	1	ISM	ENSMUSG00000039357.3	ENSMUST00000048016.3	4163	3	4012	3	4003	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATGGTTTCTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	20749047	20751081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_20749000_20751100
65286	chr16	+	1413	2	NNC	ENSMUSG00000003233.13	novel	3983	16	NA	NA	15337	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	74	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATTATTATTATTATT	NA	False	NA	NA	False	NA	NA	NA	20351272	20352757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20351349_20351420
65287	chr17	+	2153	5	NNC	ENSMUSG00000003198.11	novel	705	4	NA	NA	-38	-112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	18.6145104689863	1	124	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTACTAGATCCATTC	NA	False	NA	NA	False	NA	NA	NA	56199429	56205816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56199631_56199757_56199861_56202820_56202948_56203140_56203202_56204155
65288	chr6	-	1030	1	Antisense	novelGene_ENSMUSG00000007458.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTACTTGTGCAGAGGA	NA	False	NA	52	True	NA	NA	NA	122294625	122293595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122293600_122294600
65289	chr2	+	1606	6	ISM	ENSMUSG00000027519.11	ENSMUST00000029024.10	7155	7	1671	5168	1575	1021	3prime_fragment	FALSE	canonical	3	160	junction_5	17.904189453868	46	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCGTGACAAGCCTGACTA	NA	False	NA	NA	False	NA	NA	NA	173503223	173543968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_173503305_173529939_173530022_173536902_173536975_173537051_173537159_173537682_173537793_173542814
65291	chr14	-	2411	8	FSM	ENSMUSG00000044350.15	ENSMUST00000062789.15	2444	8	31	2	31	-2	multi-exon	FALSE	canonical	3	38	junction_3	13.9737362978714	48	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGTTATCCATTCCT	NA	False	NA	NA	False	NA	NA	NA	77274050	77261641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273251_77273431_77273936
65292	chr14	-	1939	1	Antisense	novelGene_ENSMUSG00000021840.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGGGTTAAGGGAACAAAG	NA	False	NA	NA	False	NA	NA	NA	47538115	47536176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_47536200_47538100
65293	chr17	+	1287	9	ISM	ENSMUSG00000002500.16	ENSMUST00000170239.9	1375	10	518	0	164	0	3prime_fragment	FALSE	canonical	3	9	junction_2	2.8613807855649	54	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTCTCTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	24947311	24955117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24947484_24949842_24950012_24951309_24951446_24952282_24952470_24952557_24952719_24952890_24952993_24954390_24954487_24954695_24954816_24954973
65295	chr9	+	648	1	ISM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	86858	1	3365	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	93	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72656485	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_72656500_72657100
65296	chr1	+	1633	6	NNC	ENSMUSG00000050122.20	novel	1636	8	NA	NA	7195	27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.4418648119966	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATCAGAGTAAAAGTTGG	NA	False	NA	NA	False	NA	NA	NA	37081983	37116104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37082066_37083844_37084290_37090797_37090961_37099410_37099581_37102514_37102631_37115447
65297	chr4	+	974	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-50	3413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.298199332808	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586433	146627265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146616526_146616611_146619877_146620005_146626770
65298	chr7	-	833	6	ISM	ENSMUSG00000038502.18	ENSMUST00000046575.17	1883	12	4845	10	0	-9	3prime_fragment	FALSE	canonical	3	742	junction_3	37.2955761451677	68	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAACCCACTTGCTGTCC	NA	False	NA	NA	False	NA	NA	NA	44514367	44512501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336
65299	chr10	+	1950	5	FSM	ENSMUSG00000020325.11	ENSMUST00000020575.5	1955	5	1	4	1	-4	multi-exon	FALSE	canonical	2	5	junction_4	2.6809513236909	23	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGTGTATTTTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	79613106	79618460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79613232_79614396_79614583_79615798_79616015_79616957_79617186_79617265
65303	chr8	-	2230	14	ISM	ENSMUSG00000031451.7	ENSMUST00000033828.7	2548	15	562	4	562	-4	3prime_fragment	FALSE	canonical	3	43	junction_8	9.27808386665514	28	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACCCTGTGTTGGTCACT	6322	False	NA	NA	False	NA	NA	NA	13543928	13515377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_13515901_13516626_13516856_13518191_13518365_13520218_13520388_13521448_13521614_13524656_13524847_13525038_13525158_13526111_13526234_13527043_13527167_13528251_13528375_13529006_13529130_13533673_13533737_13535670_13535696_13543845
65304	chr4	+	1160	6	NNC	ENSMUSG00000045751.17	novel	3224	17	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	143.521426971724	90	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTTCTGTCATTCTCGT	-16	True	NA	NA	False	NA	NA	NA	24496450	24503409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_24496635_24496831_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
65305	chr12	-	2524	1	Intergenic	novelGene_4421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCCGAGACAACTTCTGA	NA	False	NA	NA	False	NA	NA	NA	81069292	81066768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_81066800_81069300
65306	chr8	-	797	8	NNC	ENSMUSG00000031708.18	novel	1334	12	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1381.88411753146	1	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTGTGTTCTTTAGG	NA	False	NA	NA	False	NA	NA	NA	84299908	84298326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299262_84299469_84299576_84299656_84299773_84299848
65307	chr6	+	3021	1	Intergenic	novelGene_4173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCGTAGTGTGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	54075591	54078612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_54075600_54078600
65309	chr5	-	1547	1	FSM	ENSMUSG00000107200.2	ENSMUST00000202883.2	963	1	-547	-37	-547	37	mono-exon	FALSE	NA	NA	NA	NA	NA	2	79	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCACGATACCAATGAAG	4894	False	NA	NA	False	NA	NA	NA	92107368	92105821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92105800_92107400
65310	chrX	-	2405	18	ISM	ENSMUSG00000031264.14	ENSMUST00000033617.13	2540	19	9055	3	8388	-3	3prime_fragment	FALSE	canonical	1	1	junction_10	2.63461125606573	10	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATCTATTTTAATTTAT	NA	False	NA	NA	False	NA	NA	NA	133474834	133443087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_133443557_133446230_133446389_133447460_133447580_133448310_133448376_133450163_133450381_133451055_133451228_133451950_133452026_133455147_133455276_133455437_133455518_133456297_133456353_133457086_133457150_133457536_133457725_133459435_133459504_133459946_133460076_133466345_133466428_133469653_133469723_133473957_133474057_133474665
65312	chr8	+	764	4	NNC	ENSMUSG00000109772.2	novel	429	2	NA	NA	-5249	19124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	0.816496580927726	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGACAGGGTACCAGGTA	5780	False	NA	NA	False	NA	NA	NA	11918909	11963237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_11918998_11924137_11924331_11960736_11960897_11962914
65313	chr3	-	957	6	NNC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	355.053460763305	2704	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	NA	False	NA	NA	NA	87965803	87963826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_87964084_87964244_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
65315	chr3	+	3092	22	NNC	ENSMUSG00000028047.12	novel	3190	23	NA	NA	39	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2.94237937252865	80	30	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAAGTCAGTGCAATTGTT	5869	False	NA	NA	False	NA	NA	NA	89122578	89134139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89122632_89123987_89124195_89124991_89125249_89125334_89125438_89126327_89126437_89126519_89126572_89126695_89126845_89127161_89127303_89127458_89127537_89128264_89128418_89128640_89128752_89128833_89128942_89130309_89130470_89130711_89130831_89130937_89130991_89131266_89131461_89131592_89131772_89131883_89131933_89132116_89132314_89132558_89132732_89133610_89133751_89133832
65316	chr15	+	565	3	FSM	ENSMUSG00000022452.17	ENSMUST00000161892.2	597	3	6	26	6	6	multi-exon	FALSE	canonical	3	88	junction_1	632.5	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCGTCCCCATTTCTCA	NA	False	NA	NA	False	NA	NA	NA	82230220	82233266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82230422_82232100_82232242_82233043
65317	chr2	+	1542	1	Intergenic	novelGene_2657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTAAGTGCTGGGAAT	NA	False	NA	NA	False	NA	NA	NA	74661655	74663197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_74661700_74663200
65319	chr1	-	1814	2	FSM	ENSMUSG00000045382.7	ENSMUST00000052172.7	1805	2	-9	0	-6	0	multi-exon	FALSE	canonical	0	0	junction_1	0	15	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTGTGCTATGTCA	NA	False	NA	NA	False	NA	NA	NA	128520036	128515935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128517639_128519925
65320	chr2	-	1747	1	NIC	ENSMUSG00000009555.17	novel	3565	5	NA	NA	536	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCTGCGTTTCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	32599197	32597450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32597400_32599200
65321	chr9	-	857	1	ISM	ENSMUSG00000052698.16	ENSMUST00000040025.14	12132	58	341724	36	13428	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTATTCATCAGAAATA	NA	False	NA	NA	False	NA	NA	NA	67125261	67124404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_67124400_67125300
65322	chr1	+	1720	8	ISM	ENSMUSG00000026029.15	ENSMUST00000165549.8	1917	9	21416	2	21265	-2	3prime_fragment	FALSE	canonical	3	10	junction_5	4.37525509460387	34	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTATGTATGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	58863076	58886165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_58863407_58866365_58866472_58868031_58868171_58868254_58868309_58870764_58870827_58872791_58872934_58883502_58884005_58885780
65323	chr7	+	2700	1	Intergenic	novelGene_2971	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTGCCGCAGAAGATTC	1413	False	NA	NA	False	NA	NA	NA	63607502	63610202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_63607500_63610200
65324	chr14	+	408	4	Fusion	ENSMUSG00000095643.3_ENSMUSG00000094619.3	novel	391	2	NA	NA	-29	1076	multi-exon	FALSE	canonical	0	0	junction_3	0.942809041582063	2	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCAGGGGTACAGATATT	NA	False	NA	NA	False	NA	NA	NA	53270275	53317578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_53270411_53313234_53313324_53316193_53316232_53317432
65325	chr4	+	3322	25	NNC	ENSMUSG00000028862.7	novel	4334	29	NA	NA	2897	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	5.46961302714065	9	120	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGCTTGTCTTGGCAAC	NA	False	NA	NA	False	NA	NA	NA	132971025	132980236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132971155_132972292_132972400_132972816_132972988_132973088_132973202_132973568_132973729_132973940_132974104_132974185_132974294_132974390_132974441_132974512_132974609_132974724_132974813_132974891_132975026_132975323_132975452_132975698_132975836_132976102_132976209_132976972_132977132_132977240_132977434_132977518_132977658_132977959_132978117_132978234_132978412_132978652_132978759_132978921_132979085_132979169_132979283_132979365_132979440_132979710_132979788_132979962
65326	chr4	+	1403	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	27	4	-14	-4	multi-exon	FALSE	canonical	3	230	junction_1	334.708584793838	196	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAATACTCTGTGTGTG	822	False	NA	NA	False	NA	NA	NA	156028352	156042164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
65327	chr7	+	843	6	FSM	ENSMUSG00000030611.11	ENSMUST00000032840.5	1056	6	213	0	19	0	multi-exon	FALSE	canonical	3	364	junction_2	39.2153031353833	1412	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	78433079	78442737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442389
65328	chr8	+	1603	1	FSM	ENSMUSG00000036442.9	ENSMUST00000040445.9	1819	1	215	1	215	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	96	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGGGTTTCGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	106581978	106583581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106582000_106583600
65329	chr5	-	1995	4	NNC	ENSMUSG00000042190.13	novel	2882	3	NA	NA	-3734	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.68178700572909	22	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTTGACGTCTTGCTTG	3260	False	NA	NA	False	NA	NA	NA	113769410	113750423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113750786_113751589_113753002_113754588_113754678_113769278
65332	chr11	+	2101	1	Antisense	novelGene_ENSMUSG00000020159.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTACTTAAAGTGGTATAA	NA	False	NA	NA	False	NA	NA	NA	33506469	33508570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33506500_33508600
65333	chrX	+	1884	13	ISM	ENSMUSG00000031351.16	ENSMUST00000164800.8	3557	19	30	18224	9	15914	5prime_fragment	FALSE	canonical	3	40	junction_12	15.5802135914613	3	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATTTATAAATAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	72030974	72056925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045010_72045053_72046180_72046265_72046978_72047066_72056045
65334	chr9	-	1615	3	FSM	ENSMUSG00000032565.10	ENSMUST00000035179.9	1631	3	16	0	11	0	multi-exon	FALSE	canonical	3	25	junction_1	2	38	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTCTGGCTTCAATG	NA	False	NA	NA	False	NA	NA	NA	105009007	105006530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_105007710_105008491_105008762_105008841
65335	chr10	+	1040	5	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	6566	junction_4	420.790624895565	3	58	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	80662519	80665119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664704
65336	chr7	-	538	1	Intergenic	novelGene_2999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGGGTAAGGCCCCTGCC	NA	False	NA	NA	False	NA	NA	NA	95899284	95898746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_95898700_95899300
65337	chr5	+	966	3	FSM	ENSMUSG00000050552.9	ENSMUST00000160157.2	980	3	-2	16	-2	-13	multi-exon	FALSE	canonical	3	386	junction_1	14	2267	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTAGGGCTCAGGATGTG	NA	False	NA	NA	False	NA	NA	NA	138254090	138257644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138254596_138256916_138257035_138257301
65339	chr7	+	1021	6	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_4	120.382058463876	478	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATCTGTTCTTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	139616319	139620514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617495_139619238_139619359_139620155
65340	chr4	+	3217	11	NIC	ENSMUSG00000028327.15	novel	3606	18	NA	NA	-5026	-9	intron_retention	FALSE	canonical	0	0	junction_1	1	6	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCATACATTCACTACCT	NA	False	NA	NA	False	NA	NA	NA	45869184	45886999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_45869631_45870780_45870893_45873648_45873803_45877908_45877985_45879416_45879499_45879677_45879727_45880167_45880286_45881425_45881546_45882696_45882861_45884541_45884689_45885250
65341	chr17	+	734	3	NIC	ENSMUSG00000002379.8	novel	545	4	NA	NA	2	0	intron_retention	FALSE	canonical	3	2627	junction_1	66.5	60	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	NA	False	NA	NA	NA	57024768	57029137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57024943_57028034_57028442_57028984
65342	chr17	+	871	6	NNC	ENSMUSG00000002660.9	novel	983	6	NA	NA	35	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	597.70447547262	4	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCATGTCTGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	57297339	57303182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57300014_57300447_57300504_57302898
65343	chrX	-	1203	3	FSM	ENSMUSG00000041353.13	ENSMUST00000151067.8	864	3	3	-342	-1	0	multi-exon	FALSE	canonical	0	0	junction_2	131	438	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	NA	NA	NA	149242147	149191573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149192597_149203337_149203438_149242067
65344	chr7	+	1994	8	ISM	ENSMUSG00000054793.9	ENSMUST00000068023.8	2161	9	17159	1	-779	-1	3prime_fragment	FALSE	canonical	3	44	junction_7	8.2065180664829	82	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGGGTGGCTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	24198606	24203963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_24198728_24198937_24199091_24199348_24199484_24199900_24200066_24200156_24200248_24200989_24201163_24202090_24202220_24202936
65345	chr16	+	785	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	165	0	0	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	1069	False	NA	NA	False	NA	NA	NA	20536579	20541017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
65346	chr10	+	2327	3	FSM	ENSMUSG00000020212.15	ENSMUST00000219087.2	1318	3	-91	-918	-9	527	multi-exon	FALSE	canonical	3	115	junction_1	0	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCTGTCCTCTGGGGT	NA	False	NA	NA	False	NA	NA	NA	117977727	117984571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_117977868_117978754_117978870_117982499
65347	chr12	+	1955	5	FSM	ENSMUSG00000037594.12	ENSMUST00000037014.11	1960	5	5	0	5	0	multi-exon	FALSE	canonical	3	27	junction_2	3.74165738677394	32	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTTGTTGACTCATT	3906	False	NA	NA	False	NA	NA	NA	112772561	112779872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_112773429_112774493_112774631_112775802_112775933_112778082_112778200_112779168
65348	chr11	+	1839	4	ISM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	-18	3521	-18	0	5prime_fragment	FALSE	canonical	3	20	junction_1	8.2192186706253	49	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGCTTTGGGCTTGTG	910	False	NA	NA	False	NA	NA	NA	114742649	114759922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321
65349	chr7	-	3144	11	NNC	ENSMUSG00000030557.18	novel	2476	11	NA	NA	73	392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	16.8700918788251	9	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGGTGTTAAGTCCATC	NA	False	NA	NA	False	NA	NA	NA	67022502	66883188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_66884977_66886271_66886399_66890061_66890189_66901404_66901593_66914612_66914673_66915690_66915911_66917814_66917953_66945122_66945327_66966539_66966737_66999616_66999670_67022460
65350	chr10	-	1793	13	NNC	ENSMUSG00000040462.14	novel	2627	15	NA	NA	-12	-979	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	60.7645730120218	2	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGAGACATCCCACCCACA	NA	False	NA	NA	False	NA	NA	NA	126957012	126932499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956456_126956825
65351	chrX	+	837	7	NNC	ENSMUSG00000001964.15	novel	1595	6	NA	NA	3	-140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	103.892037979604	51	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTGATTCTTCCTACT	NA	False	NA	NA	False	NA	NA	NA	73298424	73301353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612_73300724_73301209
65353	chr19	-	1114	8	NNC	ENSMUSG00000024725.14	novel	2816	9	NA	NA	16	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	389.920661736435	8	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGAGATTTTATTATCT	NA	False	NA	NA	False	NA	NA	NA	18609137	18558189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_18558693_18562005_18562139_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
65354	chr10	-	1384	5	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	50	-130	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	175.888281303787	51	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAACAACTAAA	NA	False	NA	NA	False	NA	NA	NA	95252669	95223658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95250692_95251054_95252479
65355	chr10	-	1721	1	ISM	ENSMUSG00000002578.19	ENSMUST00000133342.10	5150	8	12943	485	11600	-485	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTGTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	128468917	128467196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128467200_128468900
65357	chr9	-	2162	7	Antisense	novelGene_ENSMUSG00000032267.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	79	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGGGAGCACCGGGAGGC	NA	False	NA	NA	False	NA	NA	NA	48921853	48896697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_48896836_48911648_48911727_48912805_48912950_48914301_48914395_48915120_48915272_48919719_48919814_48920389
65358	chr5	+	1080	1	NIC	ENSMUSG00000029465.15	novel	899	7	NA	NA	1686	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTGTACCGTGTATG	NA	False	NA	NA	False	NA	NA	NA	122543162	122544242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_122543200_122544200
65359	chr5	+	1047	4	NNC	ENSMUSG00000037905.14	novel	745	4	NA	NA	60	369	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	187.894178255267	350	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCTTTGAAGGGAACG	NA	False	NA	NA	False	NA	NA	NA	125518691	125532159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_125518780_125518870_125518957_125528733_125528837_125531389
65360	chr5	+	1462	10	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	2	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	584.73174180691	1	91	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAAGAAACAAAAACCCAA	8077	False	NA	NA	False	NA	NA	NA	145051069	145064917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062393_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
65361	SIRV7	-	882	4	NNC	SIRV7A	novel	949	5	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2037.08228165242	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147953	56032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_56098_70883_70981_114613_114989_147608
65362	chr16	-	2367	1	Antisense	novelGene_ENSMUSG00000005615.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	143	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCCTCCTTCAGCAT	NA	False	NA	NA	False	NA	NA	NA	32292507	32290140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32290100_32292500
65363	chrX	+	1836	1	Intergenic	novelGene_4058	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGTTTTGAAATACTT	NA	False	NA	NA	False	NA	NA	NA	135106211	135108047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_135106200_135108000
65364	chr17	-	1265	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	26	0	intron_retention	FALSE	canonical	3	82	junction_5	4.14728827066554	252	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5617	False	NA	NA	False	NA	NA	NA	35055877	35042968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
65365	chr6	-	1612	5	NNC	ENSMUSG00000030283.8	novel	8991	5	NA	NA	-25248	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5.88960949469487	12	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATAGTCCCCTCCACTAG	NA	False	NA	NA	False	NA	NA	NA	142935426	142773960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142935198
65369	chr5	-	1853	21	ISM	ENSMUSG00000040537.18	ENSMUST00000046838.14	2773	29	135404	24297	-111578	-24234	internal_fragment	TRUE	canonical	3	20	junction_13	5.01996015920445	5	13	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGGCAATGGTAGGTAT	NA	False	NA	NA	False	NA	NA	NA	8282673	8166556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_8166660_8167588_8167758_8171047_8171168_8177326_8177433_8180208_8180273_8180484_8180536_8182398_8182480_8184511_8184605_8184812_8184885_8186805_8186906_8191718_8191771_8193041_8193133_8194220_8194306_8195552_8195720_8196454_8196527_8199207_8199283_8202378_8202450_8208826_8208897_8210735_8210800_8217326_8217410_8282609
65370	chr2	-	2035	10	ISM	ENSMUSG00000027230.10	ENSMUST00000028663.5	2603	12	28901	0	28901	0	3prime_fragment	FALSE	canonical	3	8	junction_9	4.13058451009802	50	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGACTCTGTGTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	91825946	91812672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_91813353_91813509_91813778_91816505_91816633_91817380_91817481_91821051_91821121_91821253_91821313_91821470_91821621_91822231_91822390_91823615_91823695_91825601
65371	chr1	-	306	1	Intergenic	novelGene_459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGCTAGCTATGCAAACAT	NA	False	NA	NA	False	NA	NA	NA	137217838	137217532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_137217500_137217800
65373	chr14	-	2333	1	NIC	ENSMUSG00000022031.7	novel	2851	15	NA	NA	84	-60179	mono-exon	FALSE	NA	NA	NA	NA	NA	4	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCTGTGGTTGAAATGTT	3553	False	NA	NA	False	NA	NA	NA	65830415	65828082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_65828100_65830400
65374	chr8	+	891	5	Antisense	novelGene_ENSMUSG00000031730.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGTAGTCGGCCAAGGG	NA	False	NA	NA	False	NA	NA	NA	110320377	110322740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_110320764_110321251_110321412_110321549_110321702_110322278_110322390_110322658
65375	chr7	+	1516	1	Genic_Genomic	ENSMUSG00000049643.16	novel	NA	NA	NA	NA	110	840	mono-exon	FALSE	NA	NA	NA	NA	NA	31	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGCTGCTATGATGAGC	559	False	NA	NA	False	NA	NA	NA	27252820	27254336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_27252800_27254300
65377	chr1	+	1106	7	FSM	ENSMUSG00000025983.12	ENSMUST00000161988.2	1204	7	87	11	48	-11	multi-exon	FALSE	canonical	2	2	junction_2	2.3392781412697	6	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTGGTAATAAATTG	NA	False	NA	NA	False	NA	NA	NA	54289928	54318109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_54290045_54299082_54299247_54302602_54302824_54302932_54303112_54311636_54311706_54316812_54316930_54317869
65380	chrX	-	741	5	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	-1216	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7078.95420860313	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGAAACTACTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	101231559	101228558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230154_101230938_101231059_101231427
65381	chr17	-	1929	1	NIC	ENSMUSG00000062753.15	novel	862	5	NA	NA	11	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	NA	False	NA	NA	NA	27784671	27782742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27782700_27784700
65382	chr10	-	1299	1	FSM	ENSMUSG00000112280.2	ENSMUST00000218182.2	7840	1	6313	228	553	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	6	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTGTGTTCTCTTAGA	NA	False	NA	NA	False	NA	NA	NA	33864738	33863439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_33863400_33864700
65383	chr1	+	1484	1	ISM	ENSMUSG00000025964.16	ENSMUST00000087374.10	6426	26	148709	189	9581	-189	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTAATGTAGGATGT	NA	False	NA	NA	False	NA	NA	NA	63633762	63635246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_63633800_63635200
65387	chr6	+	1107	3	NNC	ENSMUSG00000003031.15	novel	2393	3	NA	NA	1441	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1	43	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTTCCGTAGTTATTT	827	False	NA	NA	False	NA	NA	NA	134898916	134902459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_134899047_134901205_134902060_134902336
65388	chr12	+	1351	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	124	5	124	-5	multi-exon	FALSE	canonical	3	67	junction_1	0	110	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTCAGTGTGCATTTC	NA	False	NA	NA	False	NA	NA	NA	10440895	10445557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_10441227_10444537
65389	chr17	-	1058	6	FSM	ENSMUSG00000002769.10	ENSMUST00000002846.9	1035	6	-31	8	-31	-8	multi-exon	FALSE	canonical	3	17	junction_3	8.1338797630651	79	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCAAGCCTGTGCCTGG	2948	False	NA	NA	False	NA	NA	NA	47040125	47036597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47036898_47036986_47037109_47037194_47037338_47037531_47037643_47038190_47038319_47039871
65390	chr3	-	823	5	NIC	ENSMUSG00000028070.8	novel	908	6	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	382.924519324631	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	NA	False	NA	NA	NA	87965831	87963826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_87964084_87964292_87964441_87965227_87965339_87965436_87965546_87965633
65391	chr12	-	2933	1	Intergenic	novelGene_4463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTGTATAATAAGATGAGC	NA	False	NA	NA	False	NA	NA	NA	106006671	106003738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_106003700_106006700
65392	chr18	+	1908	4	NNC	ENSMUSG00000079608.11	novel	1496	9	NA	NA	-5002	-10938	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	91	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATGTGTAGTACCAGGC	NA	False	NA	NA	False	NA	NA	NA	70600522	70605567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_70601589_70602519_70602846_70604740_70605050_70605360
65394	chr12	-	1476	9	NIC	ENSMUSG00000042050.9	novel	3256	8	NA	NA	0	-25	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	7.20134536041704	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAATAAAAGATGTGATAA	NA	False	NA	NA	False	NA	NA	NA	116226606	116201613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_116201680_116205298_116205402_116209624_116209842_116210319_116210398_116211614_116211924_116218024_116218117_116219450_116219872_116221040_116221095_116226470
65395	chr11	+	1166	8	Antisense	novelGene_ENSMUSG00000020832.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATGCACCCTGGTACCGA	NA	False	NA	NA	False	NA	NA	NA	77964206	77971191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_77964477_77966296_77966461_77966540_77966668_77966819_77966874_77967051_77967106_77968642_77968718_77969082_77969218_77970904
65396	chr2	+	893	8	NNC	ENSMUSG00000062647.17	novel	914	8	NA	NA	-68	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2194.61639063432	3	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACAAAATTATCTTGAC	NA	False	NA	NA	False	NA	NA	NA	26800707	26803311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26800843_26801017_26801139_26801501_26801584_26802030_26802170_26802377_26802458_26802682_26802814_26802999_26803070_26803176
65397	chr13	-	1280	3	FSM	ENSMUSG00000113346.3	ENSMUST00000223470.3	1306	3	10	16	10	-16	multi-exon	FALSE	canonical	3	37	junction_2	10.5	150	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCTGCTCTTCCGAAGG	NA	False	NA	NA	False	NA	NA	NA	73495493	73492799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_73493358_73494614_73495181_73495337
65399	chr7	-	1867	1	Intergenic	novelGene_2928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATGTTTGTGAGTGCC	NA	False	NA	NA	False	NA	NA	NA	34931874	34930007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_34930000_34931900
65400	chr7	+	1006	8	NNC	ENSMUSG00000053898.13	novel	1267	10	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	248.629631937851	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	28524710	28531672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28531190_28531293_28531428
65401	chrY	+	1576	1	Intergenic	novelGene_4702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCCGAATCGTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	20670649	20672225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_20670600_20672200
65402	chr15	-	1622	2	FSM	ENSMUSG00000098176.3	ENSMUST00000183130.3	2458	2	488	348	488	-348	multi-exon	FALSE	canonical	3	5	junction_1	0	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAATAGGACTTTGACC	NA	False	NA	NA	False	NA	NA	NA	75853803	75852068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75853537_75853649
65403	chr3	-	1082	8	NNC	ENSMUSG00000059743.13	novel	1237	10	NA	NA	481	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1029.52027663373	2	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	NA	False	NA	NA	NA	89008141	89000894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89001222_89001750_89001833_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975
65404	chr16	+	2099	11	ISM	ENSMUSG00000022824.13	ENSMUST00000023520.7	2942	12	5189	11	5189	-4	3prime_fragment	FALSE	canonical	0	0	junction_1	1.13578166916005	12	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGATAGTGTCCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	33619925	33640293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_33619948_33623401_33623531_33624949_33625057_33626392_33626449_33628237_33628405_33631254_33631378_33632135_33632263_33633248_33633287_33634888_33634974_33636043_33636240_33639244
65405	chr15	+	770	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4542.52452277365	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCGGCGTGTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	76788284	76790511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790126_76790172_76790320
65408	chrX_GL456233v2_random	+	1582	8	Intergenic	novelGene_4789	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	36	junction_5	6.38557046817915	25	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAGTTATAACATAAGTCT	NA	False	NA	NA	False	NA	NA	NA	251348	468281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_GL456233v2_random_+_251453_354605_354788_394862_395040_409324_409605_422004_422125_460904_461142_467193_467333_467938
65409	chr14	-	2217	2	FSM	ENSMUSG00000022114.6	ENSMUST00000022709.6	2087	2	-134	4	-134	-4	multi-exon	FALSE	canonical	3	119	junction_1	0	203	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGCTGAGCTTGTTTTGT	NA	False	NA	-84	True	NA	NA	NA	106134387	106129384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_106131236_106134021
65411	chr10	+	911	6	NNC	ENSMUSG00000019923.15	novel	1138	8	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	517.668001715385	2	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	72490744	72504997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_72490810_72491814_72491906_72492069_72492208_72492877_72493018_72493097_72493221_72504643
65412	chr12	-	1200	2	Intergenic	novelGene_4357	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGACACACCAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	54898076	54892173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_54892785_54897487
65413	chr4	-	2801	1	Antisense	novelGene_ENSMUSG00000028514.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGCTCTTATTTTAGAA	NA	False	NA	NA	False	NA	NA	NA	106228656	106225855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_106225900_106228700
65414	chr2	+	1548	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110208.8	1521	3	-28	1	-12	-1	multi-exon	FALSE	canonical	3	39	junction_2	10	146	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTGTCCTCTTTTTGTGC	NA	False	NA	NA	False	NA	NA	NA	131052331	131055433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131052602_131053182_131053394_131054366
65417	chr8	+	1368	2	FSM	ENSMUSG00000051147.11	ENSMUST00000093470.7	1396	2	6	22	6	-8	multi-exon	FALSE	canonical	2	5	junction_1	0	54	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATATATATCTAAAACT	NA	False	NA	NA	False	NA	NA	NA	67947515	67955214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_67947555_67953885
65418	chr17	-	2032	4	NNC	ENSMUSG00000062101.13	novel	1889	4	NA	NA	279	-24	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	19.5675468285856	3	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGGATAATAAAATCTATT	NA	False	NA	NA	False	NA	NA	NA	56251980	56245404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56246994_56247928_56247990_56248185_56248313_56251725
65419	chr11	+	650	4	ISM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	0	0	0	0	intron_retention	FALSE	canonical	3	3662	junction_1	442.481135818868	257	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	NA	NA	NA	62493702	62495633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_62493850_62494060_62494109_62494422_62494473_62495228
65420	chr10	+	893	4	NNC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1163.33896846773	4	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	4519	False	NA	NA	False	NA	NA	NA	79978222	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79978441_79979624_79979820_79981052_79981142_79981256
65421	chr11	+	1145	9	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	-327	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	450.692522680375	1	61	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	2865	False	NA	NA	False	NA	NA	NA	120579772	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120580168_120591969_120592110_120592306_120592418_120594415_120594492_120594897_120594951_120599483_120599536_120599755_120599818_120599896_120600073_120600193
65422	chr2	-	1473	4	NIC	ENSMUSG00000015083.12	novel	868	6	NA	NA	-59	0	intron_retention	FALSE	canonical	3	13	junction_1	1.88561808316413	52	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGTCTTTTGTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	25390684	25388667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25389128_25389409_25389518_25389600_25389672_25389850
65424	chr11	+	1168	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	3	-265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5640	1	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGCCTCCATCCTTTA	3038	False	NA	NA	False	NA	NA	NA	75623741	75656406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642849_75655556
65426	chr18	+	1563	2	NNC	ENSMUSG00000024238.16	novel	2768	7	NA	NA	35845	2177	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	40	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATCTGATGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	5766925	5769919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_5768026_5769456
65427	chr4	+	1264	5	Genic_Genomic	ENSMUSG00000086061.8	novel	561	4	NA	NA	5510	-1711	multi-exon	FALSE	non_canonical	0	0	junction_1	0	263	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGGGAAGGCGACAGAT	NA	False	NA	NA	False	NA	NA	NA	141131677	141135673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_141132447_141132582_141132672_141134399_141134536_141135115_141135326_141135613
65428	chr5	+	839	5	NIC	ENSMUSG00000029440.16	novel	735	5	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_4	79.4744455784374	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	NA	False	NA	NA	NA	123366317	123386590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123386355
65429	chr4	+	825	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-2425	3413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	167.298199332808	11	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146596951	146627265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146596978_146597241_146597335_146616526_146616611_146619877_146620005_146626770
65430	chr11	+	1859	5	Antisense	novelGene_ENSMUSG00000025144.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	655	45	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCCGGAACCCTCCCAC	3081	False	NA	NA	False	NA	NA	NA	120601767	120604564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120602133_120602215_120602308_120602532_120602583_120602669_120602726_120603268
65432	chr10	+	1021	6	NNC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	55	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	125.085570710614	8	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAAATTATGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	44144465	44240284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179663_44239851
65435	chr3	+	1538	3	NNC	ENSMUSG00000087411.2	novel	663	4	NA	NA	-653	701	intron_retention	FALSE	canonical	3	4	junction_1	0	45	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTAAGACAGGATGG	237	False	NA	NA	False	NA	NA	NA	90358236	90365103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90358727_90362372_90362550_90364232
65436	chr15	-	797	4	NNC	ENSMUSG00000022474.16	novel	1059	7	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	565.214020428447	1	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845047	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835814_81836124_81836179_81840369_81840462_81844901
65439	chr10	-	2641	1	Intergenic	novelGene_3450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACACAGAAAGAGGAAGGGA	NA	False	NA	NA	False	NA	NA	NA	61765433	61762792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_61762800_61765400
65440	chr4	+	1624	1	ISM	ENSMUSG00000066058.12	ENSMUST00000094823.4	4168	4	5290	16	5290	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	3	48	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAATAAAAAGTTTCAAAA	8690	False	NA	NA	False	NA	NA	NA	119117995	119119619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_119118000_119119600
65441	chr11	+	2492	14	FSM	ENSMUSG00000018470.9	ENSMUST00000018614.3	2538	14	36	10	36	-10	multi-exon	FALSE	canonical	3	22	junction_1	7.85293824331087	62	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCCTCACGACCACGTC	NA	False	NA	NA	False	NA	NA	NA	69217119	69223858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69217750_69218945_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69220854_69221008_69221053_69221222_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
65443	chr10	-	1078	2	Antisense	novelGene_ENSMUSG00000020308.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGGGACCGGAAGCGCCG	NA	False	NA	NA	False	NA	NA	NA	79511961	79505267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79505616_79511231
65447	chrX	-	1580	1	Intergenic	novelGene_3881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGACCAGTGTCAGATCT	NA	False	NA	NA	False	NA	NA	NA	9356767	9355187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_9355200_9356800
65448	chr2	-	2673	1	ISM	ENSMUSG00000074994.7	ENSMUST00000117237.2	8973	12	59217	12	59217	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	12	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAACAAAATCAGAATG	2493	False	NA	NA	False	NA	NA	NA	104587824	104585151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_104585200_104587800
65449	chr7	-	548	4	NIC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	2440.01530049848	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6398	False	NA	NA	False	NA	NA	NA	121701069	121690053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121690187_121690808_121690909_121695831_121695955_121700877
65450	chr16	-	799	6	NNC	ENSMUSG00000022544.15	novel	987	7	NA	NA	2851	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	191.010575623446	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTCCTCAGCATCCTTC	NA	False	NA	NA	False	NA	NA	NA	5070942	5065249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_5065464_5066480_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888
65451	chr19	+	1557	10	FSM	ENSMUSG00000024805.17	ENSMUST00000225411.2	1626	10	74	-5	74	5	multi-exon	FALSE	canonical	3	44	junction_8	28.4843470118477	94	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCCAAAATGCCAGCTT	NA	False	NA	NA	False	NA	NA	NA	36387221	36433597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
65453	chr5	-	1838	4	FSM	ENSMUSG00000096230.5	ENSMUST00000201400.4	1848	4	11	-1	11	1	multi-exon	FALSE	canonical	0	0	junction_1	1.63299316185545	24	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGATGTTATTCCTGAACG	NA	False	NA	NA	False	NA	NA	NA	94076900	94072634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_94073505_94074400_94074992_94075444_94075759_94076837
65454	chr9	+	923	6	NNC	ENSMUSG00000044664.8	novel	1584	5	NA	NA	-908	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4.84148737476408	27	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCAACCATGTTCAAAGA	1802	False	NA	NA	False	NA	NA	NA	110626325	110632771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110626360_110626505_110626566_110627080_110627477_110627779_110627937_110628225_110628388_110632657
65455	chr10	-	1172	1	Intergenic	novelGene_3453	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTTACTGAGTTGGA	NA	False	NA	NA	False	NA	NA	NA	62282564	62281392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_62281400_62282600
65457	chr4	-	1658	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	173	-2	-33	-1	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	110	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCCCTGCGGCTTTTG	NA	False	NA	NA	False	NA	NA	NA	148244367	148237257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
65459	chr7	-	1114	3	NNC	ENSMUSG00000070436.13	novel	2173	6	NA	NA	0	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36	1	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGTGTGAAAGCAGATT	NA	False	NA	NA	False	NA	NA	NA	99002321	98994634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995200_98998175_98998663_99002259
65462	chr11	+	2552	6	NIC	ENSMUSG00000083161.3	novel	1581	5	NA	NA	-10	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	5.3665631459995	12	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAACTGTTTTAATTCTT	NA	False	NA	NA	False	NA	NA	NA	83115301	83151780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_83115458_83116359_83116512_83134643_83134823_83145102_83146143_83149950_83150065_83150869
65464	chr8	+	996	8	NNC	ENSMUSG00000036246.15	novel	3443	19	NA	NA	54	1030	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	2.77010277566647	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	70261393	70265349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70261471_70262423_70262509_70263279_70263368_70263451_70263510_70263807_70263934_70264017_70264083_70264182_70264291_70264960
65466	chr14	-	2945	5	ISM	ENSMUSG00000033083.17	ENSMUST00000161304.2	3823	8	8311	32	8311	-32	3prime_fragment	FALSE	canonical	3	25	junction_1	1.80277563773199	28	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGAATTATTTCCAATAAA	NA	False	NA	NA	False	NA	NA	NA	101692348	101679835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_101682208_101684962_101685140_101686637_101686808_101689853_101690014_101692282
65467	chr17	-	1089	7	NIC	ENSMUSG00000015120.16	novel	1138	7	NA	NA	19	-1	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTTTTGTTGCATTATCA	4559	False	NA	NA	False	NA	NA	NA	25492545	25480890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
65468	chr1	-	2909	8	ISM	ENSMUSG00000026211.19	ENSMUST00000155084.8	4131	12	125	5810	125	-7	5prime_fragment	FALSE	canonical	3	33	junction_3	4.13546137889432	30	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAACCTCATGGTAAAT	NA	False	NA	NA	False	NA	NA	NA	75482160	75472987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
65469	chr13	+	599	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	93	0	93	0	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	57	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGTTGAAATTAATTTG	NA	False	NA	NA	False	NA	NA	NA	51799360	51804696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_51799508_51803620_51803749_51804372
65473	chr5	+	1283	7	Antisense	novelGene_ENSMUSG00000040351.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACACACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	3761064	3783109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_3761471_3763109_3763239_3772545_3772640_3777491_3777658_3779636_3779778_3782537_3782629_3782853
65475	chr13	-	691	5	NNC	ENSMUSG00000060739.9	novel	2700	6	NA	NA	5	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	353.38532439817	42	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTTTAGTTTGGGGC	NA	False	NA	NA	False	NA	NA	NA	97274376	97267502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97267737_97268350_97268544_97270046_97270126_97272145_97272217_97274262
65476	chr16	+	1541	11	NNC	ENSMUSG00000032965.12	novel	2601	11	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.7155006132545	125	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTATCATGTTCAGAGAA	NA	False	NA	NA	False	NA	NA	NA	49519594	49584474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_49519867_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
65477	chr6	-	1979	12	NNC	ENSMUSG00000040234.17	novel	3241	12	NA	NA	17	-1138	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	276.304598957308	2	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTAGTGTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	146535979	146504987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512379_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
65478	chr1	+	1069	5	NNC	ENSMUSG00000025925.15	novel	1581	9	NA	NA	-2	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	467.403666545311	44	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACGGTTTGTTCTATTCC	NA	False	NA	NA	False	NA	NA	NA	15875878	15913653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877961_15883264_15883333_15908419_15908513_15913144
65479	chr13	+	1400	11	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	3	-7971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	514.720594109076	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTAAGGGGGGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	49835608	49857286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49856954
65480	chr13	-	1175	1	Antisense	novelGene_ENSMUSG00000021481.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGCCACAGCAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	55264546	55263371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55263400_55264500
65481	chr13	-	552	1	Intergenic	novelGene_1375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGACCGTGCCCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	55263084	55262532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55262500_55263100
65482	chr3	-	1144	5	Antisense	novelGene_ENSMUSG00000027952.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1986	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGCCCCCCCCCGCCCTCC	6675	False	NA	NA	False	NA	NA	NA	89376311	89366465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89366770_89369186_89369252_89371601_89371755_89374852_89374980_89375816
65483	chr10	-	1200	8	NNC	ENSMUSG00000019868.17	novel	1974	8	NA	NA	-12	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	251.027033262498	12	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATAGTCCGGGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	14581221	14531086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_14531590_14536809_14536897_14543675_14543781_14551708_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
65484	chr3	+	1743	1	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	39	-3819	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGTAAGTTCCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	89325788	89327531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89325800_89327500
65485	chr9	+	572	5	NNC	ENSMUSG00000000088.8	novel	645	5	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3994.1924324574	8	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTGTGATGTTGTC	420	False	NA	NA	False	NA	NA	NA	57428604	57439710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57428713_57436283_57436356_57437523_57437646_57438951_57439076_57439564
65487	chr11	+	1333	5	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	13790	1145	4646	-1145	3prime_fragment	FALSE	canonical	2	4	junction_1	14.6180539060437	99	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTCCTCTTGCTTGAA	NA	False	NA	NA	False	NA	NA	NA	94840839	94842723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_94841031_94841116_94841400_94841534_94841726_94841926_94842170_94842298
65488	chr2	-	980	5	FSM	ENSMUSG00000060703.13	ENSMUST00000028356.9	1257	5	277	0	277	0	multi-exon	FALSE	canonical	2	4	junction_1	33.0189339621981	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	4279	False	NA	NA	False	NA	NA	NA	60114485	60082336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_60082836_60087376_60087548_60088226_60088344_60102445_60102557_60114403
65489	chr10	+	863	4	NNC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1144.58881505786	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	4508	False	NA	NA	False	NA	NA	NA	79978211	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79978441_79979665_79979824_79981056_79981142_79981256
65490	chr17	-	302	2	Genic_Genomic	ENSMUSG00000117468.2	novel	816	1	NA	NA	-4689	-812	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCAGTTCCAGAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	33076683	33071990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_33072188_33076578
65491	chr13	+	721	1	Antisense	novelGene_ENSMUSG00000058773.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTTTGCTCAGGCTCCT	NA	False	NA	NA	False	NA	NA	NA	21964074	21964795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_21964100_21964800
65493	chr8	-	637	9	Antisense	novelGene_ENSMUSG00000050357.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGCCGGGACGGCCCAAT	NA	False	NA	NA	False	NA	NA	NA	106415126	106412906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_106412944_106413189_106413281_106413374_106413428_106413999_106414059_106414180_106414309_106414414_106414507_106414700_106414772_106414887_106414963_106415095
65495	chr7	+	808	1	FSM	ENSMUSG00000041117.9	ENSMUST00000094805.5	4809	1	3999	2	3999	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCTTGTTTCCGAGGTG	8675	False	NA	NA	False	NA	NA	NA	16730631	16731439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_16730600_16731400
65496	chr2	+	1604	8	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	0	-2	combination_of_known_splicesites	FALSE	canonical	3	26	junction_6	73.3576644855567	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATATATGGATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	179713585	179727686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_179713680_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
65497	chr15	-	2444	1	NIC	ENSMUSG00000062683.12	novel	731	5	NA	NA	89	-2794	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGACTTCTCGCTTCAC	3990	False	NA	NA	False	NA	NA	NA	102579473	102577029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102577000_102579500
65501	chr7	-	1300	2	FSM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	-4	2	3	0	multi-exon	FALSE	canonical	3	34	junction_1	0	167	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6921	False	NA	NA	False	NA	NA	NA	127021203	127018140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127018814_127020576
65502	chr9	+	730	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-24	-216	-24	216	mono-exon	FALSE	NA	NA	NA	NA	NA	438	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAAGCACCTGAC	NA	False	NA	NA	False	NA	NA	NA	96777686	96778416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
65503	chr4	+	1126	5	FSM	ENSMUSG00000028291.8	ENSMUST00000084299.6	1397	5	264	7	250	-7	multi-exon	FALSE	canonical	3	720	junction_1	39.7138200126858	267	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTATTCTGCCTGTTTC	262	False	NA	NA	False	NA	NA	NA	34551200	34566901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_34551274_34562311_34562456_34565127_34565278_34565933_34566006_34566214
65510	chr10	+	2182	10	ISM	ENSMUSG00000044937.16	ENSMUST00000075632.14	4366	16	27743	4	-3332	-4	3prime_fragment	FALSE	canonical	1	2	junction_4	1.34256066373273	7	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTTGAGTTTTTACTC	NA	False	NA	NA	False	NA	NA	NA	86569417	86612704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_86569659_86572664_86572864_86580289_86580469_86586110_86586251_86594121_86594294_86594952_86595101_86596629_86596783_86599727_86599862_86611793_86611924_86612018
65511	chr8	-	752	3	NNC	ENSMUSG00000093904.3	novel	4902	5	NA	NA	0	421	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3383	25	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCGTTTACTTAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	127672594	127661314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_127661779_127667928_127667976_127672353
65512	chr12	+	524	3	Intergenic	novelGene_4431	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTGCCAGCTCCGGGA	NA	False	NA	NA	False	NA	NA	NA	86356768	86358027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_86356838_86356921_86357039_86357689
65513	chr17	+	1953	9	NNC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	5	-22098	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	44.8857925740428	34	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATAAAAAACCCATATGTA	NA	False	NA	NA	False	NA	NA	NA	29768769	29803770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29802942
65514	chr2	+	703	2	NNC	ENSMUSG00000027560.5	novel	1768	8	NA	NA	144118	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_1	0	562	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTAGTTCTTTCTGCAC	NA	False	NA	NA	False	NA	NA	NA	170717844	170721689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_170717952_170721093
65516	chrX	+	1956	2	Genic_Genomic	ENSMUSG00000082560.2	novel	702	1	NA	NA	-1016	1086	multi-exon	FALSE	canonical	3	18	junction_1	0	20	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGAACTTGCCAG	NA	False	NA	NA	False	NA	NA	NA	153967658	153970462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_153967809_153968656
65520	chr1	+	2000	1	Intergenic	novelGene_458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGCATGCATACTGAGGA	NA	False	NA	NA	False	NA	NA	NA	136861614	136863614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_136861600_136863600
65521	chr5	+	1390	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	1	95	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	NA	False	NA	NA	NA	73450184	73471284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
65522	chr18	+	1729	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	51	16	-11	-16	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	205	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCTTTTACTGTAGATT	9118	False	NA	NA	False	NA	NA	NA	38552010	38598234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
65523	chr15	-	1782	10	FSM	ENSMUSG00000022617.16	ENSMUST00000171140.8	1416	10	-374	8	47	-8	multi-exon	FALSE	canonical	3	259	junction_9	49.0736408087093	454	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAACTTAAACAAATACAG	1266	False	NA	NA	False	NA	NA	NA	89314016	89310577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
65525	chr1	+	1880	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188290.7	1855	10	-25	0	-3	0	multi-exon	FALSE	canonical	3	30	junction_9	6.24400947476761	70	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2234	False	NA	NA	False	NA	NA	NA	75213105	75222334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
65526	chr3	-	3516	1	Intergenic	novelGene_3155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	68	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCCCAAAGCCACACGCAAA	8810	False	NA	NA	False	NA	NA	NA	94404078	94400562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_94400600_94404100
65527	chr7	+	1102	7	FSM	ENSMUSG00000019737.15	ENSMUST00000176304.8	1006	7	-100	4	0	0	multi-exon	FALSE	canonical	3	23	junction_4	73.2385751423994	45	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGTCTGAGAATATCAG	NA	False	NA	NA	False	NA	NA	NA	30014240	30018467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30017392_30017468_30018097_30018157_30018248
65528	chrX	+	857	1	Antisense	novelGene_ENSMUSG00000031162.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTAGAAACGGAGACCAC	1677	False	NA	NA	False	NA	NA	NA	7825509	7826366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_7825500_7826400
65531	chr10	+	1562	2	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	51	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGCATTCACAAGCATCC	NA	False	NA	NA	False	NA	NA	NA	61751908	61759361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_61752029_61757919
65533	chr18	-	1188	9	NNC	ENSMUSG00000024583.4	novel	1998	9	NA	NA	-44	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	312.499199998976	2	59	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCCAAGCTTAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	63825437	63797185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146_63825286_63825348
65534	chr1	-	727	6	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGACCCAGGAACAATGCAA	9076	False	NA	NA	False	NA	NA	NA	86458403	86454491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454664_86456891_86456967_86457177_86457274_86457451_86457524_86457684_86457745_86458151
65535	chr9	-	2389	9	NIC	ENSMUSG00000002032.18	novel	2448	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	3.92905841137543	18	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAGTGTTTGTTCATT	8234	False	NA	NA	False	NA	NA	NA	44710542	44705072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960_44710058_44710477
65537	chr9	-	528	1	NIC	ENSMUSG00000032067.7	novel	1046	6	NA	NA	-1104	-1304	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTAAATACTGGCTAATGA	9679	False	NA	NA	False	NA	NA	NA	50438231	50437703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50437700_50438200
65538	chr19	-	710	7	NIC	ENSMUSG00000071662.5	novel	890	8	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	548.478324295703	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	8775921	8770490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8775587_8775698_8775822
65539	chrX	-	1395	4	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-12	1	combination_of_known_splicesites	FALSE	canonical	3	60	junction_2	10.4029910228848	173	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTGCTCCGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	51061661	51057570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_51058747_51059091_51059163_51059858_51059953_51061607
65542	chr17	-	1035	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	31	117	31	-117	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	2	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTCCTTGGATGGAGCCA	NA	False	NA	NA	False	NA	NA	NA	24388404	24382956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
65544	chr10	-	905	2	FSM	ENSMUSG00000020219.8	ENSMUST00000218149.2	435	2	-10	-460	-7	-216	multi-exon	FALSE	canonical	3	3722	junction_1	0	2	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCTGCCCAGCACTT	5625	False	NA	NA	False	NA	NA	NA	80736626	80735499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80736094_80736315
65545	chr8	+	1299	5	FSM	ENSMUSG00000062007.14	ENSMUST00000165324.2	1238	5	-6	-55	-6	55	multi-exon	FALSE	canonical	3	5	junction_1	2.48746859276655	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTGGAGGATGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	72947280	72954894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72947430_72950639_72950730_72951582_72951749_72952211_72952332_72954120
65546	chr8	+	258	1	ISM	ENSMUSG00000062007.14	ENSMUST00000072097.14	1824	6	11516	116	7711	-116	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAAAAAATTTTTTTCCA	NA	False	NA	NA	False	NA	NA	NA	72954997	72955255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_72955000_72955300
65547	chr11	+	2263	6	ISM	ENSMUSG00000038020.6	ENSMUST00000107479.3	4855	15	12595	704	-952	-6	3prime_fragment	FALSE	canonical	0	0	junction_5	1.72046505340853	12	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATGAACCAACTTCCTTA	NA	False	NA	NA	False	NA	NA	NA	98740205	98743819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98740292_98740754_98740806_98740919_98741008_98741190_98741256_98741610_98741666_98741901
65552	chrX	-	1920	14	Intergenic	novelGene_3920	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	22	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCCCCATAATTATTTC	NA	False	NA	NA	False	NA	NA	NA	35311067	35275042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_35275462_35277560_35277680_35279866_35279940_35280447_35280559_35283642_35283755_35291950_35292015_35293629_35293689_35295938_35296077_35297955_35298070_35301189_35301328_35304762_35304946_35308516_35308631_35310704_35310918_35311004
65553	chr17	-	1498	3	NNC	ENSMUSG00000040888.11	novel	1177	4	NA	NA	3	-29	intron_retention	FALSE	non_canonical	0	0	junction_1	311	12	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAGGCCAAAATAAACTGA	NA	False	NA	NA	False	NA	NA	NA	24915061	24912192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24912587_24913146_24913417_24914227
65554	chr15	-	2120	7	NIC	ENSMUSG00000000489.8	novel	2944	7	NA	NA	34	-31	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	5.6494837522261	18	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTTGTAAAAAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	79897370	79880105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79897290
65555	chr13	-	1597	11	FSM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	112	4	-4	-4	multi-exon	FALSE	canonical	3	65	junction_5	9.43186089804128	226	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACAGAGTTTGCTGTGTA	NA	False	NA	NA	False	NA	NA	NA	32522611	32003565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_32003962_32004124_32004194_32101602_32101700_32124466_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
65556	chr1	+	1499	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	35	5	-2	-4	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	1	28	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGAGCCAGCTTGGACTC	NA	False	NA	NA	False	NA	NA	NA	75412608	75419813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
65557	chr2	-	569	5	NNC	ENSMUSG00000018770.10	novel	714	5	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1845.53750639211	51	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	NA	False	NA	NA	NA	73741656	73738790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739052_73739658_73739722_73740207_73740286_73741298_73741405_73741595
65558	chr1	-	1155	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	35	131	2	-17	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	1348	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGTGAATTTGATATG	NA	False	NA	NA	False	NA	NA	NA	186481520	186453305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
65564	chr8	-	968	13	ISM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	-18	2224	-1	-2224	5prime_fragment	FALSE	canonical	3	173	junction_7	16.5428735915701	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTGGTGAGTGTCTGGG	NA	False	NA	NA	False	NA	NA	NA	23143452	23120365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
65565	chr5	+	1794	5	FSM	ENSMUSG00000023707.14	ENSMUST00000131094.8	708	5	18	-1104	1	2	multi-exon	FALSE	canonical	3	73	junction_4	13.2759180473518	126	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCTCTGTTTGCTATTA	NA	False	NA	NA	False	NA	NA	NA	124250420	124253541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127
65567	chr6	+	1899	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	-5	28	-5	-28	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	227	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTACATAAAAAGTAATACTT	NA	False	NA	NA	False	NA	NA	NA	94477306	94581625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
65569	chr10	-	2499	1	Antisense	novelGene_ENSMUSG00000015501.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCTTAGCATTCAGAGACG	NA	False	NA	NA	False	NA	NA	NA	14006979	14004480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_14004500_14007000
65570	chr7	-	1100	2	ISM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	0	0	0	0	intron_retention	FALSE	canonical	0	0	junction_1	0	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	4756022	4754790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4754975_4755106
65571	chr6	-	1048	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	-22	8	-22	-7	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	147	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTTTTTTCTTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	124689163	124681351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
65572	chr2	+	2179	14	NNC	ENSMUSG00000039463.15	novel	4521	17	NA	NA	26	1	intron_retention	FALSE	non_canonical	0	0	junction_5	35.2541071508827	1	120	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCATGGCAGGGTTCAGC	NA	False	NA	NA	False	NA	NA	NA	167266064	167316557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287549_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947
65573	chr4	-	1595	4	FSM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	129	0	69	0	multi-exon	FALSE	canonical	3	665	junction_1	33.0891052899423	92	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTGCTCCTTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	154244994	154241941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_154243023_154243725_154243880_154244541_154244719_154244811
65574	chr3	-	663	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	-94	-1	-60	0	multi-exon	FALSE	canonical	3	112	junction_3	1254.14043161929	503	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1048	False	NA	NA	False	NA	NA	NA	88460260	88457125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
65575	chrX	-	697	4	Antisense	novelGene_ENSMUSG00000047844.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGAGCGAGGGCAGGTC	NA	False	NA	NA	False	NA	NA	NA	135041160	135039799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_135039912_135040267_135040347_135040601_135040708_135040760
65576	chrX	+	907	7	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	16	94	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	277.22538965013	1186	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGATGACTCAATGTC	NA	False	NA	NA	False	NA	NA	NA	37689547	37702397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_37689656_37690228_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
65578	chr17	+	1430	8	NNC	ENSMUSG00000002257.9	novel	2277	11	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	44.4682872553978	40	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCTCCTGCCCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	28426806	28447577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28442877_28447088
65579	chr5	+	952	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	239	1	216	-1	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCCTGTTGTGTTGCATT	NA	False	NA	NA	False	NA	NA	NA	124254400	124256258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
65581	chr4	-	908	5	Antisense	novelGene_ENSMUSG00000038630.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCTTGTCCCGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	58952442	58943616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_58943657_58945997_58946528_58948847_58948948_58951827_58951954_58952330
65582	chr17	-	1444	8	NIC	ENSMUSG00000002668.9	novel	2521	24	NA	NA	1194	88	combination_of_known_junctions	TRUE	canonical	3	18	junction_2	6.23027499638758	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCTTTGAAGAACTTTCT	NA	False	NA	NA	False	NA	NA	NA	57377603	57372816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57373642_57373731_57373943_57374048_57374117_57374592_57374701_57374788_57374834_57377112_57377185_57377407_57377449_57377529
65583	chr5	+	1417	7	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	336	1566	-253	266	5prime_fragment	FALSE	canonical	3	90	junction_1	11.13552872566	55	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACAAACAAAGTGCTGCA	NA	False	NA	NA	False	NA	NA	NA	31684691	31692600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201
65584	chr1	+	1124	1	Intergenic	novelGene_433	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGAACAGCAGCTATGCC	6937	False	NA	NA	False	NA	NA	NA	118859433	118860557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_118859400_118860600
65585	chr13	-	1080	7	FSM	ENSMUSG00000058022.15	ENSMUST00000121404.8	1602	7	52	470	-16	-13	multi-exon	FALSE	canonical	3	17	junction_6	3.97562014729219	75	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATATAAAGGGAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	42001108	41918078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_41981618_41981862_42000966
65586	chr1	-	1279	5	FSM	ENSMUSG00000041889.8	ENSMUST00000041240.4	1763	5	314	170	154	-167	multi-exon	FALSE	canonical	3	26	junction_2	2.8613807855649	87	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGACGTCCAAGGCATTA	NA	False	NA	NA	False	NA	NA	NA	135302661	135298964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135299735_135299934_135300103_135300889_135301024_135302115_135302288_135302626
65587	chr7	+	1647	1	FSM	ENSMUSG00002076102.1	ENSMUST00020182748.1	127	1	1	-1521	1	1521	mono-exon	FALSE	NA	NA	NA	NA	NA	8	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGGTATTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	81179603	81181250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_81179600_81181200
65588	chr1	-	1318	4	FSM	ENSMUSG00000073481.10	ENSMUST00000161341.8	968	4	-360	10	-360	0	multi-exon	FALSE	canonical	3	891	junction_1	38.0555150040335	30	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	NA	False	NA	NA	NA	184555592	184545888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685
65589	chr10	-	917	4	ISM	ENSMUSG00000040521.12	ENSMUST00000140564.8	833	5	707	-274	707	-20	3prime_fragment	FALSE	canonical	3	924	junction_2	66.8946103127067	2	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTCATTTGTATAGTG	NA	False	NA	NA	False	NA	NA	NA	126865553	126858220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422
65590	chr5	-	1250	2	NNC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	15062	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCCTTTTAAAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	109823845	109822426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109822535_109822703
65591	chr4	-	1836	10	FSM	ENSMUSG00000023232.18	ENSMUST00000105996.8	1878	10	40	2	-1	-2	multi-exon	FALSE	canonical	2	4	junction_9	3.01027048536535	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCCTCCCATGTCTTG	7836	False	NA	NA	False	NA	NA	NA	130169339	130147289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_130147859_130149148_130149359_130152020_130152157_130152493_130152585_130154435_130154606_130156820_130156959_130157374_130157455_130158053_130158245_130158861_130159024_130169250
65592	chr7	-	1264	4	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	25.4689353265241	262	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGTGTTTTGTGTTAA	6927	False	NA	NA	False	NA	NA	NA	127021197	127018140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_127018814_127019181_127019282_127020576_127020691_127020820
65593	chr4	-	983	2	Antisense	novelGene_ENSMUSG00000028927.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	5	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGCCTGTCTGGTACAT	5611	False	NA	NA	False	NA	NA	NA	140660291	140658701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_140659613_140660219
65594	chr4	-	1090	1	Intergenic	novelGene_2001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCTGGGCCACGGTGAC	8303	False	NA	NA	False	NA	NA	NA	140657599	140656509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_140656500_140657600
65596	chr15	-	1815	1	ISM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	4449	16	4416	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTCTCTTGGCAATTCA	NA	False	NA	NA	False	NA	NA	NA	78409376	78407561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_78407600_78409400
65597	chr9	+	994	4	ISM	ENSMUSG00000041624.11	ENSMUST00000213060.2	2897	5	116	126025	116	52261	5prime_fragment	FALSE	canonical	2	7	junction_3	4.78423336480244	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGGTAAGTAATCATGTA	250	False	NA	NA	False	NA	NA	NA	3533003	3635152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_3533100_3579517_3579580_3582578_3582701_3634438
65598	chr1	-	1760	1	ISM	ENSMUSG00000018199.10	ENSMUST00000159879.2	8738	9	24481	38	18439	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	21	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCGATAGGTGTACCAAATA	NA	False	NA	NA	False	NA	NA	NA	143628325	143626565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_143626600_143628300
65603	chr9	+	738	1	NIC	ENSMUSG00000006941.6	novel	1035	4	NA	NA	2085	-17	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCGCTGACCTAAGCC	NA	False	NA	NA	False	NA	NA	NA	120323641	120324379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_120323600_120324400
65605	chr15	-	817	9	NNC	ENSMUSG00000023755.11	novel	1261	8	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.0504178899733	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	NA	False	NA	NA	NA	98779250	98775658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98775706_98776038_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
65608	chr12	-	1133	8	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	108.423583547989	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGCAAGGGTTTGTTTCA	7680	False	NA	NA	False	NA	NA	NA	110807353	110774234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774834_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807260
65609	chr2	-	2001	16	Antisense	novelGene_ENSMUSG00000019715.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	102	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTGGCGCCGCCTTCCGCT	NA	False	NA	NA	False	NA	NA	NA	29848607	29825460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29825611_29826019_29826245_29828511_29828619_29829148_29829294_29829492_29829554_29830091_29830202_29832612_29832777_29833734_29833848_29833998_29834068_29838898_29839044_29839167_29839356_29840611_29840742_29842564_29842654_29845607_29845698_29847755_29847819_29848455
65610	chr10	+	786	1	FSM	ENSMUSG00000110841.2	ENSMUST00000217344.2	782	1	-15	11	-1	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	4	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	45751385	45752171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_45751400_45752200
65612	chr17	-	2306	2	NNC	ENSMUSG00000023912.11	novel	2895	9	NA	NA	22867	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAAAAAAAAATGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	43955156	43952793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_43954808_43954864
65613	chr7	+	1898	1	ISM	ENSMUSG00000059136.5	ENSMUST00000218865.2	11486	3	13807	2946	6448	-2946	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACTACAGAAAGCTTTGC	6332	False	NA	NA	False	NA	NA	NA	140253649	140255547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_140253600_140255500
65614	chr5	-	2624	12	ISM	ENSMUSG00000029576.18	ENSMUST00000110784.8	3106	14	2659	-6	2494	6	3prime_fragment	FALSE	canonical	3	33	junction_7	7.98966274280721	17	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTATCTTTTGTATTCTTA	9054	False	NA	NA	False	NA	NA	NA	142492755	142470615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142471004_142471167_142471308_142471609_142471747_142472509_142472862_142473201_142473393_142474157_142474309_142479982_142480156_142480490_142480729_142481080_142481194_142483592_142483754_142489667_142489706_142492213
65616	chr6	-	2185	1	ISM	ENSMUSG00000057691.9	ENSMUST00000073124.9	3651	7	22014	0	2781	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTTTCATGGATTCCAT	7434	False	NA	NA	False	NA	NA	NA	48041513	48039328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_48039300_48041500
65618	chr1	+	2418	3	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	15364	-826	intron_retention	FALSE	canonical	3	10	junction_2	34.5	3	43	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACAGTGTAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	183185688	183190194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_183187850_183189427_183189544_183190053
65619	chr15	+	1381	2	FSM	ENSMUSG00000022452.17	ENSMUST00000230165.2	736	2	-27	-618	-27	1	multi-exon	FALSE	canonical	3	1603	junction_1	0	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGGTCGTCCCCATT	NA	False	NA	NA	False	NA	NA	NA	82230250	82233261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82230471_82232100
65620	chr14	-	1467	7	NIC	ENSMUSG00000040472.16	novel	2153	15	NA	NA	288	-10	intron_retention	FALSE	canonical	3	454	junction_6	29.4189092629591	1	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCCTCTAGGCTGCCAA	NA	False	NA	NA	False	NA	NA	NA	55957302	55953791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956209_55956320_55956410_55956547_55957164_55957252
65621	chr14	-	920	8	Antisense	novelGene_ENSMUSG00000022111.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	180	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGACCCTCCATGACTGCT	NA	False	NA	NA	False	NA	NA	NA	101933559	101891512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_101891654_101903194_101903324_101903945_101904104_101904426_101904512_101905962_101906011_101928005_101928082_101932592_101932652_101933335
65622	chr6	+	645	1	Intergenic	novelGene_4226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAGTTAAGCATTTTAAAA	4579	False	NA	NA	False	NA	NA	NA	115797526	115798171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_115797500_115798200
65627	chr5	-	1415	10	ISM	ENSMUSG00000042216.14	ENSMUST00000112325.8	2274	18	28027	7	180	-7	3prime_fragment	FALSE	canonical	3	16	junction_9	21.3252299424594	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCAGTTGCTGTCTCCT	NA	False	NA	NA	False	NA	NA	NA	113430578	113413546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113430457
65628	chr17	+	2459	12	FSM	ENSMUSG00000024339.13	ENSMUST00000025197.6	3442	12	976	7	-64	-4	multi-exon	FALSE	canonical	1	1	junction_4	2.62221910942836	10	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTAATGTATGTTATGGT	6122	False	NA	NA	False	NA	NA	NA	34423476	34435288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34423598_34424260_34424759_34424843_34424959_34427727_34427859_34428063_34428270_34430843_34431042_34431203_34431333_34432988_34433178_34433296_34433471_34433619_34433780_34434307_34434445_34434887
65630	chr1	-	809	3	NNC	ENSMUSG00000026281.16	novel	1040	3	NA	NA	321	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	783	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAAATATATCTCACGAG	5564	False	NA	NA	False	NA	NA	NA	93726402	93720313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722666_93726163
65632	chr10	-	895	4	ISM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	167	5688	7	-269	5prime_fragment	FALSE	canonical	3	50	junction_2	5.18544972870135	49	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGTCTAAACTGGAACACT	NA	False	NA	NA	False	NA	NA	NA	100425090	100413814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_100414294_100419775_100419872_100422052_100422171_100424888
65633	chr11	+	1394	4	FSM	ENSMUSG00000040158.13	ENSMUST00000040687.12	1523	4	20	109	20	-4	multi-exon	FALSE	canonical	3	98	junction_1	3.09120616516523	496	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCAGGGGTTTCTGTTA	4228	False	NA	NA	False	NA	NA	NA	73067928	73072869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_73068169_73071214_73071335_73071556_73071635_73071913
65634	chrX	+	1660	1	Intergenic	novelGene_3957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAACTAACTCCACCCATG	NA	False	NA	NA	False	NA	NA	NA	72726711	72728371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_72726700_72728400
65636	chr8	-	2421	6	NIC	ENSMUSG00000038215.16	novel	770	6	NA	NA	-3	922	intron_retention	FALSE	canonical	2	2	junction_5	62.3775600677038	1	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACATAGAGTTACTTAT	NA	False	NA	NA	False	NA	NA	NA	57003881	56995018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57002259_57002420_57003097
65637	chr7	-	2105	4	NNC	ENSMUSG00000030402.6	novel	1648	5	NA	NA	-229	12	intron_retention	FALSE	canonical	3	13	junction_1	6.12825877028341	2	45	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAATAAAAGTAACTCCAA	9789	False	NA	NA	False	NA	NA	NA	19013755	19010754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19011132_19011874_19011936_19012009_19012116_19012194
65639	chr11	+	1490	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	7	1330	0	62	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	1	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGCCACGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	20151438	20175526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
65640	chr12	+	1064	9	NIC	ENSMUSG00000021115.16	novel	1509	13	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	336.388168638554	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	NA	NA	NA	105976551	106041459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105976618_106002798_106002964_106009095_106009152_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
65642	chr8	-	1609	6	NNC	ENSMUSG00000036356.16	novel	3943	10	NA	NA	128369	187	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1.16619037896906	2	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTTGTTGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	68854170	68810431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_68811366_68814719_68814802_68825271_68825367_68826190_68826370_68841247_68841350_68853953
65644	chr15	-	2183	18	NNC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	-2	-32	intron_retention	FALSE	non_canonical	0	0	junction_4	33.6294688698854	1	71	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTTGTCCCAGCAGTAA	NA	False	NA	NA	False	NA	NA	NA	89080649	89069053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070193_89070251_89070374_89070465_89070565_89070631_89070956_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073719_89074439_89074557_89075076_89075120_89075192_89075232_89080421
65646	chr10	-	3273	1	Intergenic	novelGene_3559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGCATTCAAAGAGGCAAT	NA	False	NA	NA	False	NA	NA	NA	122820463	122817190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_122817200_122820500
65647	chr2	+	782	4	NIC	ENSMUSG00000074578.15	novel	738	5	NA	NA	1	-6	intron_retention	FALSE	canonical	3	933	junction_2	34.8934887272046	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTATCTGCTGTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	166905141	166907776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_166905648_166907078_166907138_166907353_166907401_166907606
65648	chr11	+	1205	5	NNC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	-2	-4707	intron_retention	FALSE	canonical	0	0	junction_4	51.8772589869588	1	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGATGCCCAGGGGGATA	7774	False	NA	NA	False	NA	NA	NA	58197995	58200732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_58198083_58198399_58198831_58199620_58199885_58200217_58200267_58200358
65652	chr17	-	823	4	NNC	ENSMUSG00000024007.16	novel	1462	4	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	753.38539643104	34	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGGTCTAGTATTGTT	9930	False	NA	NA	False	NA	NA	NA	29482919	29469801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29470354_29471250_29471293_29480710_29480866_29482845
65653	chr11	+	1003	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8362	24	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	201.516128386787	47	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGCCAAAAAATTTCCTT	9494	False	NA	NA	False	NA	NA	NA	104200496	104219285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_104200551_104201094_104201361_104212176_104212259_104213253_104213367_104218797
65654	chr6	-	1539	9	NIC	ENSMUSG00000063884.7	novel	2680	17	NA	NA	-10	230	intron_retention	FALSE	canonical	0	0	junction_3	327.317029040653	1	39	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTCTGCCTCATTC	3038	False	NA	NA	False	NA	NA	NA	71885744	71872046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71872977_71874096_71874153_71875323_71875440_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
65655	chrX	+	2543	2	ISM	ENSMUSG00000071719.3	ENSMUST00000096363.3	3909	3	24483	345	24483	-345	3prime_fragment	FALSE	canonical	3	13	junction_1	0	10	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGACCCAACTCCCTACTCC	NA	False	NA	NA	False	NA	NA	NA	98889109	98892051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_98889167_98889565
65658	chr1	+	1116	7	FSM	ENSMUSG00000026429.10	ENSMUST00000027687.8	1116	7	12	-12	12	12	multi-exon	FALSE	canonical	3	373	junction_1	158.492902049272	1653	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAACGTGTGTCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	134890314	134901912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134890525_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
65659	chrX	-	592	2	ISM	ENSMUSG00000031146.7	ENSMUST00000136155.2	1212	4	2403	-2	2344	2	3prime_fragment	FALSE	canonical	3	2166	junction_1	0	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTTTAAGTCTATAATGA	NA	False	NA	NA	False	NA	NA	NA	7535208	7534196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_7534746_7535165
65660	chr16	+	763	1	NIC	ENSMUSG00000022868.7	novel	1370	7	NA	NA	-225	-2915	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACACACAGAATAATGGAA	NA	False	NA	NA	False	NA	NA	NA	22713283	22714046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22713300_22714000
65661	chr9	-	894	6	FSM	ENSMUSG00000074269.11	ENSMUST00000098674.6	883	6	-34	23	-34	-1	multi-exon	FALSE	canonical	0	0	junction_3	244.73054570282	1601	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTTTATCAATGTTTTAT	9016	False	NA	NA	False	NA	NA	NA	58648876	58560161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
65662	chr8	-	987	1	Antisense	novelGene_ENSMUSG00000031562.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACATAGCAGCTTGGGAAA	NA	False	NA	NA	False	NA	NA	NA	48593555	48592568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_48592600_48593600
65663	chr13	-	2338	18	FSM	ENSMUSG00000021553.15	ENSMUST00000022036.14	4567	18	45	2184	37	-2184	multi-exon	FALSE	canonical	0	0	junction_1	1.22545097976469	7	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGAGGTGTGATCCTA	3663	False	NA	NA	False	NA	NA	NA	58758646	58703302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_58703631_58706022_58706135_58706366_58706466_58707022_58707105_58710828_58711027_58711830_58712000_58714038_58714170_58717090_58717217_58719258_58719340_58720370_58720452_58721257_58721336_58722054_58722169_58724538_58724684_58726218_58726409_58728328_58728421_58730427_58730514_58735995_58736086_58758510
65664	chr11	+	1248	1	Intergenic	novelGene_2432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGAGGGCCTATGAGGG	NA	False	NA	NA	False	NA	NA	NA	84513869	84515117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_84513900_84515100
65665	chr13	-	2362	1	Intergenic	novelGene_1469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAACCAGAAGATCGAGC	NA	False	NA	NA	False	NA	NA	NA	73647090	73644728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_73644700_73647100
65666	chr5	-	2337	14	Antisense	novelGene_ENSMUSG00000107120.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACTAACCCTGTTCTGAA	9067	False	NA	NA	False	NA	NA	NA	31638147	31609796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_31609922_31610498_31610558_31622789_31622976_31623573_31623680_31623934_31624018_31624660_31624788_31625494_31625582_31627698_31627799_31628338_31628507_31630107_31630304_31630794_31630895_31633012_31633078_31634122_31634222_31637311
65669	chr9	-	1113	4	Antisense	novelGene_ENSMUSG00000032121.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTGGGTGGGTGG	NA	False	NA	NA	False	NA	NA	NA	37134514	37119477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_37119636_37129560_37129669_37130493_37130599_37133772
65671	chr19	-	703	6	NNC	ENSMUSG00000060803.7	novel	821	7	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1350.73929386836	8	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	4087921	4085406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4085662_4085835_4085932_4087041_4087192_4087289_4087397_4087584_4087621_4087862
65672	chr17	+	2378	5	NIC	ENSMUSG00000116895.2	novel	1684	12	NA	NA	2612	-2456	intron_retention	FALSE	canonical	3	125	junction_3	31.8786762585902	1	107	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAAAGTTTTTAGG	NA	False	NA	NA	False	NA	NA	NA	15233208	15240255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15233312_15233933_15234024_15236450_15236549_15237402_15238462_15239227
65673	chr9	+	803	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	18	13	-4	0	multi-exon	FALSE	canonical	3	695	junction_3	22.4258035902098	2088	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGTTGTTTCATTTCCT	8500	False	NA	NA	False	NA	NA	NA	110485588	110540661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
65674	chr8	+	1705	1	Intergenic	novelGene_1740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGATCATCCGATCCCCT	NA	False	NA	NA	False	NA	NA	NA	111376983	111378688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_111377000_111378700
65676	chr3	-	802	2	Intergenic	novelGene_3107	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCAAGCATTAAAAAGTATG	NA	False	NA	NA	False	NA	NA	NA	41429811	41415602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41416328_41429734
65677	chrX	-	2186	6	NNC	ENSMUSG00000025269.17	novel	1884	6	NA	NA	154	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	34.6848670171878	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCAGTAGACCATGTTGA	NA	False	NA	NA	False	NA	NA	NA	149370913	149354511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370376
65678	chr18	-	833	1	Intergenic	novelGene_4503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCCAAACAGCATCGTG	1424	False	NA	NA	False	NA	NA	NA	10015460	10014627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_10014600_10015500
65680	chr9	-	907	1	ISM	ENSMUSG00000040433.17	ENSMUST00000152594.8	7406	6	66496	2659	33230	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAGTTAGAAATCTTCAA	NA	False	NA	NA	False	NA	NA	NA	96568388	96567481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_96567500_96568400
65681	chr19	+	1206	2	NNC	ENSMUSG00000110156.3	novel	647	2	NA	NA	30	2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	39	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACACTACACAGCGGCT	9419	False	NA	NA	False	NA	NA	NA	5963044	5964859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5963101_5963709
65682	chr11	-	1913	1	Genic_Genomic	ENSMUSG00000086725.2	novel	NA	NA	NA	NA	826	89	mono-exon	FALSE	NA	NA	NA	NA	NA	25	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAAAGATTTTTATTG	NA	False	NA	NA	False	NA	NA	NA	29122732	29120819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_29120800_29122700
65683	chr12	+	770	5	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-16	-225	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	191.209799696564	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAAGCTTAACTTCTGT	NA	False	NA	NA	False	NA	NA	NA	21366373	21373595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_21366514_21367376_21367430_21367898_21368048_21371334_21371457_21373289
65684	chr3	+	1363	12	NNC	ENSMUSG00000028109.15	novel	1437	15	NA	NA	1	300	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	125.814043547289	1	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAAGTAAAATGTTTTCC	NA	False	NA	NA	False	NA	NA	NA	95466989	95493409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95482768_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95493210
65686	chr1	+	1279	1	Intergenic	novelGene_383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTAGATGAATTGCATAA	5121	False	NA	NA	False	NA	NA	NA	69605679	69606958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_69605700_69607000
65688	chr2	-	1011	1	Intergenic	novelGene_2768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAATAGGATTTACCACTG	NA	False	NA	NA	False	NA	NA	NA	164957389	164956378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_164956400_164957400
65691	chr16	-	967	5	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4884.99178607293	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACCAGCTGACAAGGCTAT	7204	False	NA	NA	False	NA	NA	NA	18066525	18057650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18058058_18058757_18058880_18063035_18063223_18065152_18065290_18066411
65692	chr14	-	1708	1	Intergenic	novelGene_621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGACAGAAGCACTCTCA	NA	False	NA	NA	False	NA	NA	NA	76867491	76865783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_76865800_76867500
65693	chr17	-	1073	4	NIC	ENSMUSG00000004865.17	novel	1002	8	NA	NA	-3	-2898	intron_retention	FALSE	canonical	3	656	junction_3	133.935307767096	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGCATTACACAGAAACAGC	NA	False	NA	NA	False	NA	NA	NA	28841428	28825328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_28826167_28827619_28827739_28840950_28841012_28841373
65695	chr15	+	2945	1	Intergenic	novelGene_3267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	75	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAGCCGAGTGATCTTTA	3984	False	NA	NA	False	NA	NA	NA	25762770	25765715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_25762800_25765700
65696	chr9	+	808	2	NNC	ENSMUSG00000063856.9	novel	1072	2	NA	NA	25	-4	intron_retention	FALSE	canonical	0	0	junction_1	0	4	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTGTTTGTGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	108216499	108217538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108216745_108216975
65697	chrX	-	927	1	ISM	ENSMUSG00000051323.17	ENSMUST00000149154.8	10289	6	105157	44	4181	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTAAAGGCTATTATGGA	NA	False	NA	NA	False	NA	NA	NA	132484579	132483652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_132483700_132484600
65700	chr15	+	1684	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-6409	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	42.0979141407267	115	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTCTGCCCCCTGGTG	8461	False	NA	NA	False	NA	NA	NA	84547411	84587874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84547463_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
65701	chr7	-	557	2	NNC	ENSMUSG00000025492.7	novel	678	2	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	73	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTATGACTGCTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	140590680	140589501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140589798_140590419
65702	chr15	-	811	5	FSM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	-19	-3	2	3	multi-exon	FALSE	canonical	3	56	junction_1	529.66121247454	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTGTAGATGCAGAAAC	NA	False	NA	NA	False	NA	NA	NA	82128947	82118276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333_82128414_82128823
65703	chr7	-	1361	12	NNC	ENSMUSG00000030839.13	novel	2551	12	NA	NA	458	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	40.0002066110366	1	40	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAACAGAAGATTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	46284913	46092601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264114_46264168_46264201_46268119_46268183_46270984_46271099_46275208_46275346_46275632_46275694_46282083_46282179_46283178_46283335_46284844
65704	chr2	-	2530	8	FSM	ENSMUSG00000079056.13	ENSMUST00000088538.6	1296	8	373	-1607	373	-25	multi-exon	FALSE	canonical	3	65	junction_1	5.52175659716791	77	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAATAAAAGAAACTTGACA	10001	False	NA	NA	False	NA	NA	NA	127324046	127298442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127323924
65705	chr11	-	1470	1	Antisense	novelGene_ENSMUSG00000020755.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGCCTATGACTCATAAG	NA	False	NA	NA	False	NA	NA	NA	115825947	115824477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_115824500_115825900
65707	chr10	+	863	6	FSM	ENSMUSG00000020056.17	ENSMUST00000171151.9	837	6	-31	5	-6	-5	multi-exon	FALSE	canonical	1	1	junction_5	153.628903530553	35	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGCGTTTTCTGATTCT	NA	False	NA	NA	False	NA	NA	NA	88037001	88061219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88060893
65708	chr7	-	712	4	NNC	ENSMUSG00000062797.15	novel	806	4	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	440.642964566805	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	NA	False	NA	NA	NA	89590357	89567895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_89568216_89569280_89569340_89572771_89572924_89590176
65710	chrX	+	882	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-86	89	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	150	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACTCAACAGATGACTCA	NA	False	NA	NA	False	NA	NA	NA	37689368	37702392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
65711	chr5	+	2276	6	FSM	ENSMUSG00000029723.17	ENSMUST00000100540.10	2730	6	439	15	173	-15	multi-exon	FALSE	canonical	0	0	junction_4	171.869252631179	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGATATTTCTGAGTAGA	NA	False	NA	NA	False	NA	NA	NA	137744430	137766697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137760637_137760971_137766222
65712	chrX	-	1199	10	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	27	303	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	170.443502822258	2006	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	72161281	72151711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72160623_72160671_72161207
65714	chr1	-	1270	4	FSM	ENSMUSG00000045259.5	ENSMUST00000061878.5	1558	4	19	269	19	-269	multi-exon	FALSE	canonical	3	17	junction_1	1.88561808316413	44	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCTCTGAATCCTTT	7890	False	NA	NA	False	NA	NA	NA	171188347	171186282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171186549_171187022_171187222_171187309_171187470_171187702
65715	chr7	+	1685	1	Antisense	novelGene_ENSMUSG00000070462.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAAAACTTGACATTGGG	NA	False	NA	NA	False	NA	NA	NA	83529092	83530777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_83529100_83530800
65716	chr5	-	2652	20	ISM	ENSMUSG00000040473.16	ENSMUST00000054865.13	4956	23	1	5395	1	1683	5prime_fragment	FALSE	canonical	2	4	junction_16	2.42448269605916	7	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAACAAAGAGTGTATGCAA	NA	False	NA	NA	False	NA	NA	NA	5714238	5634672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_5634849_5636355_5636433_5637140_5637279_5639119_5639313_5643771_5643854_5645920_5646040_5654273_5654393_5663685_5663851_5667168_5667386_5668947_5669070_5669166_5669216_5671919_5672044_5675749_5675928_5676008_5676159_5690128_5690228_5694423_5694501_5696935_5697046_5699789_5699856_5707787_5707848_5713907
65718	chr10	+	734	7	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	3201.4123142069	2	26	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	806	False	NA	NA	False	NA	NA	NA	79889472	79892273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890880_79891756_79891782_79891873_79891934_79892019
65719	chr7	-	560	3	ISM	ENSMUSG00000030595.16	ENSMUST00000137121.2	572	4	1034	-52	36	52	3prime_fragment	FALSE	canonical	3	578	junction_1	9	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCAGACACCAGCCATGC	NA	False	NA	NA	False	NA	NA	NA	28465903	28461141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28461361_28461450_28461557_28465668
65720	chr7	+	866	5	FSM	ENSMUSG00000064023.5	ENSMUST00000085461.4	1322	5	456	0	437	0	multi-exon	FALSE	canonical	3	33	junction_4	3.90512483795333	369	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCGACTGTGCTTTGACC	3333	False	NA	NA	False	NA	NA	NA	43447456	43453246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43447557_43448047_43448208_43448488_43448752_43451503_43451638_43453037
65721	chr2	-	993	1	Antisense	novelGene_ENSMUSG00000095315.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAACAGGAAGAACTCAGA	NA	False	NA	NA	False	NA	NA	NA	150167814	150166821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_150166800_150167800
65722	chr9	+	1492	13	ISM	ENSMUSG00000032497.20	ENSMUST00000196981.5	1839	15	23075	0	-20115	0	3prime_fragment	FALSE	canonical	3	142	junction_5	25.6693721517817	75	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGGATTTTGTTTGT	4988	False	NA	NA	False	NA	NA	NA	110970255	111053290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111022114_111022187_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
65723	chr15	-	1187	11	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	27	-3	combination_of_known_junctions	FALSE	canonical	3	62	junction_3	114.705056558113	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACAGACTTAAGTGACA	1676	False	NA	NA	False	NA	NA	NA	89313606	89310565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
65724	chr7	-	1377	1	NIC	ENSMUSG00000032637.16	novel	3853	23	NA	NA	292	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	NA	False	NA	NA	False	NA	NA	NA	126092256	126090879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126090900_126092300
65725	chr9	+	1017	4	FSM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	120	1482	120	-1482	multi-exon	FALSE	canonical	3	46	junction_1	7.40870359029762	154	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTACATTTAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	37119638	37134514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_37119702_37129561_37129673_37130497_37130601_37133774
65728	chr17	-	1079	1	NIC	ENSMUSG00000002668.9	novel	2984	21	NA	NA	1088	2423	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTACACACAGAAACCTGT	NA	False	NA	NA	False	NA	NA	NA	57377709	57376630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57376600_57377700
65730	chr5	-	922	11	NNC	ENSMUSG00000023079.15	novel	1439	14	NA	NA	654	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	111.147694532995	1	30	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGTAAGTGAGAAAGACAG	NA	False	NA	NA	False	NA	NA	NA	134412702	134389094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_134389130_134389807_134389996_134390518_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405787_134411634_134411685_134412593
65731	chr17	+	890	6	NNC	ENSMUSG00000002660.9	novel	983	6	NA	NA	17	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	568.68810432433	3	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTCTTTGTCCCATGTC	NA	False	NA	NA	False	NA	NA	NA	57297321	57303172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57297514_57297605_57297678_57298293_57298391_57299885_57300014_57300447_57300554_57302877
65732	chr18	+	784	5	NNC	ENSMUSG00000024646.15	novel	833	5	NA	NA	10	-18	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_3	422.4963757241	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGGCTTGTAAAGT	NA	False	NA	NA	False	NA	NA	NA	84869548	84897968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_84869733_84889629_84889759_84891264_84891295_84895886_84895987_84897627
65733	chr2	+	930	11	NNC	ENSMUSG00000027384.7	novel	1200	11	NA	NA	13	8	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	77.5835678478375	37	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCCCAGAATTTTCATC	NA	False	NA	NA	False	NA	NA	NA	140012962	140045560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_140013061_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
65735	chr13	+	2191	8	ISM	ENSMUSG00000109561.2	ENSMUST00000207464.2	5146	20	50288	76310	12224	12308	internal_fragment	FALSE	canonical	3	5	junction_6	5.00611870512435	14	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAAATGTTCTTTGAA	NA	False	NA	NA	False	NA	NA	NA	96935327	96970237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_96935400_96935895_96935973_96940615_96940772_96957821_96957965_96962605_96962751_96967062_96967116_96967957_96969369_96970103
65737	chr4	-	1453	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	27	4	5	-4	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	7	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGGTGTCTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	133005076	132993359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
65739	chr7	-	947	6	FSM	ENSMUSG00000005575.17	ENSMUST00000125964.8	801	6	-55	-91	-35	0	multi-exon	FALSE	canonical	3	39	junction_5	904.553503116317	318	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	9034	False	NA	NA	False	NA	NA	NA	12771609	12769164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771481
65740	chr7	-	1881	1	Intergenic	novelGene_3048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAACAGGATGAAGACAT	NA	False	NA	NA	False	NA	NA	NA	135293752	135291871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_135291900_135293800
65741	chr1	-	2854	4	NNC	ENSMUSG00000060519.12	novel	3545	6	NA	NA	-2904	-25	intron_retention	FALSE	canonical	0	0	junction_1	22.1560124771785	1	155	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAATAAAAACAAGGTCAG	NA	False	NA	NA	False	NA	NA	NA	156497204	156481211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_156483510_156484041_156484167_156494168_156494336_156496940
65742	chr4	-	2359	1	Antisense	novelGene_ENSMUSG00000034035.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTCTGCAGCCAGCGTT	6894	False	NA	NA	False	NA	NA	NA	116457318	116454959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_116455000_116457300
65743	chr1	-	1012	6	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	18	-796	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2130.75370702482	1	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAATTTGTGCAAAGTTA	7463	False	NA	NA	False	NA	NA	NA	160040278	160030732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160031261_160032537_160032636_160033665_160033766_160034182_160034209_160035967_160036166_160040216
65744	chr7	-	1249	2	Antisense	novelGene_ENSMUSG00000035228.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCTGGACGGCCAGGAC	NA	False	NA	NA	False	NA	NA	NA	5045167	5043744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_5043972_5044145
65745	chr5	-	1065	5	NNC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	231.042744962918	60	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTATTGTATTTGGGGGG	8009	False	NA	NA	False	NA	NA	NA	114266248	114261997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114262316_114263592_114263792_114263920_114263998_114265586_114265831_114266021
65747	chr3	+	614	3	NIC	ENSMUSG00000039221.11	novel	525	4	NA	NA	1	-4	intron_retention	FALSE	canonical	3	3779	junction_1	2106.5	454	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTATAAAAACATGTATGG	NA	False	NA	NA	False	NA	NA	NA	28859659	28861560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_28859693_28860651_28861008_28861335
65748	chr10	+	1738	8	Intergenic	novelGene_3548	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	12	junction_7	30.6913535653524	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTGTTCCAACCCAGT	NA	False	NA	NA	False	NA	NA	NA	120359283	120374510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120363521_120363638_120364338_120364520_120369971_120370079_120370224_120370312_120373440
65749	chr1	-	838	1	FSM	ENSMUSG00000089782.2	ENSMUST00000162698.2	489	1	-105	-244	-105	244	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATGTA	8438	False	NA	NA	False	NA	NA	NA	97877219	97876381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_97876400_97877200
65750	chr12	-	1217	8	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	25721	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	81.7722072439715	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	110781640	110774231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780125_110781401_110781451_110781564
65752	chr16	+	1229	9	Intergenic	novelGene_3597	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCAGCTCCCTTCACCGG	NA	False	NA	NA	False	NA	NA	NA	15786555	15964514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_15786581_15855352_15855573_15865866_15865971_15871131_15871381_15932690_15932846_15936670_15936850_15957871_15957940_15958574_15958728_15964438
65753	chr7	-	994	6	NIC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	59.7943141109587	45	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	44647014	44640645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44640879_44642167_44642456_44643786_44643874_44645967_44646111_44646301_44646417_44646886
65754	chr2	-	1292	1	Intergenic	novelGene_2572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTATAGCCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	18148049	18146757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_18146800_18148000
65756	chr6	+	763	5	Intergenic	novelGene_4253	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	35	junction_3	59.9437236080643	546	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAACAACTCTGGTGA	NA	False	NA	NA	False	NA	NA	NA	125409663	125435794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_125409775_125409999_125410201_125415223_125415345_125434610_125434718_125435571
65758	chr8	-	1687	3	Intergenic	novelGene_1572	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_2	1.5	41	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCATTCAAGAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	6990686	6967322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_6968654_6981964_6982097_6990462
65759	chr19	+	1612	3	NNC	ENSMUSG00000025171.3	novel	1529	3	NA	NA	-189	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.5	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCTAGCACATGACTTC	NA	False	NA	NA	False	NA	NA	NA	41970012	42023081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41970343_42020327_42020556_42022027
65760	chr6	-	1256	10	FSM	ENSMUSG00000030032.15	ENSMUST00000153148.8	4634	10	29	3349	11	0	multi-exon	FALSE	canonical	3	33	junction_4	3.94405318873308	87	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9911	False	NA	NA	False	NA	NA	NA	83133350	83129690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156
65761	chr9	-	874	4	FSM	ENSMUSG00000079677.3	ENSMUST00000215631.2	681	4	-17	-176	-1	1	multi-exon	FALSE	canonical	3	225	junction_3	51.1881062574327	740	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGACATGTTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	20984819	20978814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984615_20984684
65763	chr9	-	1636	1	ISM	ENSMUSG00000032244.10	ENSMUST00000034775.10	6785	2	18465	13	18465	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAAAGTACCTTGAA	NA	False	NA	NA	False	NA	NA	NA	62700751	62699115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_62699100_62700800
65764	chr13	-	1686	2	Intergenic	novelGene_1523	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCTACTTCAAGTTATC	NA	False	NA	NA	False	NA	NA	NA	100885050	100883322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_100884301_100884342
65765	chr12	+	2120	10	NNC	ENSMUSG00000043153.7	novel	1456	10	NA	NA	-3	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.75233935222774	10	32	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTCAGGATTGTCAATAAA	NA	False	NA	NA	False	NA	NA	NA	36432142	36739410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_36432263_36440344_36440622_36476287_36476438_36523100_36523206_36526698_36526745_36551976_36552072_36571431_36571522_36571957_36572051_36597827_36597916_36738354
65766	chr15	+	667	4	NNC	ENSMUSG00000068220.7	novel	628	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	908.262199049494	7198	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAATCCAGCCCTTTCATG	NA	False	NA	NA	False	NA	NA	NA	78810925	78814391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78811005_78812169_78812388_78813832_78814009_78814197
65767	chr5	+	487	3	ISM	ENSMUSG00000029522.13	ENSMUST00000031495.11	557	4	4518	13	4512	1	3prime_fragment	FALSE	canonical	3	2118	junction_2	25	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCAGAGCCTGGTTTTGG	3196	False	NA	NA	False	NA	NA	NA	115608842	115612768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115609001_115610051_115610180_115612567
65768	chr11	-	1594	10	NNC	ENSMUSG00000020798.15	novel	1804	11	NA	NA	9656	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5.83941481932041	47	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGATTTCAGAGCTTCTT	9776	False	NA	NA	False	NA	NA	NA	72431471	72388984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72420359_72420550_72427353_72427507_72427996_72428146_72429149_72429224_72429868_72430013_72431240
65769	chr11	-	1952	11	NNC	ENSMUSG00000020599.14	novel	3464	10	NA	NA	8489	-1383	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.0776981498753	30	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCAGAAATCTGCCTGCC	NA	False	NA	NA	False	NA	NA	NA	109180403	109148210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_109148571_109148676_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
65770	chr1	-	3039	19	NNC	ENSMUSG00000026571.13	novel	4110	19	NA	NA	250	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	11.1865494630332	2	74	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCTTTAAGATATCCTAAA	NA	False	NA	NA	False	NA	NA	NA	165287784	165157088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165165914_165167453_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216486_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
65772	chr4	-	2527	2	NNC	ENSMUSG00000003731.14	novel	534	2	NA	NA	1039	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTGTCTTCTTTGGTT	3602	False	NA	-70	True	NA	NA	NA	129555233	129537777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129540243_129555171
65773	chr6	+	1738	13	NIC	ENSMUSG00000029534.18	novel	727	8	NA	NA	-144	-17	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	9.67241208569794	17	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTAAAAAAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	17840391	17942983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_17840640_17844907_17844963_17846197_17846314_17848002_17848079_17852256_17852412_17854929_17855028_17886002_17886118_17904895_17904969_17906406_17906510_17921987_17922139_17930764_17930858_17934117_17934258_17942668
65774	chr2	+	984	7	ISM	ENSMUSG00000017950.17	ENSMUST00000018094.13	4356	10	4420	6547	1525	-6547	internal_fragment	FALSE	canonical	0	0	junction_5	1.10554159678513	2	13	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTAATGCATGGAGATGC	NA	False	NA	NA	False	NA	NA	NA	163393527	163408278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_163393672_163394479_163394575_163400104_163400212_163400874_163401031_163404438_163404527_163406073_163406230_163408040
65775	chr12	-	2741	1	NIC	ENSMUSG00000112980.2	novel	2941	2	NA	NA	65	-458	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGTGTGGTTACAGCAAG	NA	False	NA	NA	False	NA	NA	NA	116368765	116366024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_116366000_116368800
65776	chr17	-	829	4	NNC	ENSMUSG00000097624.3	novel	1218	5	NA	NA	40	-4591	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	16.779617264871	69	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCGCTGCTCATCTTTC	NA	False	NA	NA	False	NA	NA	NA	15461005	15456437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15456884_15457287_15457536_15460531_15460624_15460962
65777	chr10	-	1480	16	NNC	ENSMUSG00000040043.18	novel	3380	15	NA	NA	124	90	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_15	119.124286170183	34	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAAGAAGTTTCTTGCTT	NA	False	NA	NA	False	NA	NA	NA	128016042	127969102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218_128012306_128015661_128015715_128015817_128015897_128016005
65778	chr5	+	741	6	FSM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	164	674	-3	171	multi-exon	FALSE	canonical	3	2983	junction_1	193.876661823954	9844	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTGTGTGGTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	147797434	147812592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
65779	chr10	-	1332	4	NNC	ENSMUSG00000020077.15	novel	1727	4	NA	NA	-6258	-5	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	4.10960933531265	104	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTACCGTGGCTATGTGA	NA	False	NA	NA	False	NA	NA	NA	62350134	62330211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62330886_62333557_62333703_62343420_62343616_62349816
65782	chr6	+	1798	8	ISM	ENSMUSG00000029860.17	ENSMUST00000203652.3	2605	10	1292	121	1049	49	3prime_fragment	FALSE	canonical	3	26	junction_2	5.16661180572146	34	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAGAGGGAATCAACGG	NA	False	NA	NA	False	NA	NA	NA	42328053	42335375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_42328083_42328203_42328297_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
65783	chr6	+	1031	2	NNC	ENSMUSG00000051256.11	novel	1201	2	NA	NA	-15	3	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_1	0	41	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAAGACTGTCCTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	113419514	113425173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113419591_113424218
65784	chr12	-	2801	14	ISM	ENSMUSG00000002688.9	ENSMUST00000002765.9	3653	19	254059	12	254059	-12	3prime_fragment	FALSE	canonical	3	9	junction_12	3.42804307002418	12	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTTCAAAGTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	50441822	50388025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_50389004_50389836_50389923_50411294_50411563_50412396_50412496_50413084_50413247_50430182_50430290_50431925_50431999_50433998_50434052_50435035_50435316_50436692_50436771_50438108_50438233_50439617_50439823_50441381_50441460_50441612
65785	chr9	-	541	3	Fusion	ENSMUSG00000076138.3_ENSMUSG00000037742.15	novel	845	3	NA	NA	-1	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	113	32	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8135	False	NA	-45	True	NA	NA	NA	78387971	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_78385988_78387588_78387694_78387788
65786	chr11	+	1130	6	Antisense	novelGene_ENSMUSG00000018727.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCTCTCTGGCTGGGCTT	NA	False	NA	NA	False	NA	NA	NA	113589006	113599783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_113589492_113590660_113590809_113593238_113593331_113594094_113594192_113597241_113597395_113599628
65787	chr3	-	1351	7	NNC	ENSMUSG00000027746.14	novel	4890	6	NA	NA	17	1789	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.148632980399	102	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAAATCATGGCTACCTT	NA	False	NA	NA	False	NA	NA	NA	53771234	53763453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_53764301_53765165_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
65788	chr7	-	2639	1	ISM	ENSMUSG00000070814.18	ENSMUST00000119139.10	3985	3	16538	0	16538	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCAGGCTGAGTTCGTGG	2659	False	NA	NA	False	NA	NA	NA	12995532	12992893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_12992900_12995500
65789	chr2	-	3705	7	ISM	ENSMUSG00000068373.16	ENSMUST00000136156.9	10127	21	208950	3438	39799	-3438	3prime_fragment	FALSE	canonical	0	0	junction_5	1.77169096878911	4	49	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGGTTCCAGAAGTCTA	NA	False	NA	NA	False	NA	NA	NA	104031729	103976855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_103979408_103983276_103983429_103985254_103985404_103987127_103987226_103998182_103998534_104022779_104022910_104031456
65791	chr11	+	822	1	Intergenic	novelGene_2434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCCATGAAGTGGAGGG	NA	False	NA	NA	False	NA	NA	NA	84753427	84754249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_84753400_84754200
65792	chrX	-	2004	3	ISM	ENSMUSG00000031325.16	ENSMUST00000127012.9	685	4	-43	1351	-43	3	5prime_fragment	FALSE	canonical	3	19	junction_1	0.5	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTGAAAGTATCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	102355431	102274984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_102276548_102277627_102277876_102355238
65794	chr11	+	821	3	NIC	ENSMUSG00000036860.15	novel	940	4	NA	NA	-14	-3	combination_of_known_splicesites	FALSE	canonical	3	65	junction_1	260	103	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATACACAGCTTCAGACC	NA	False	NA	NA	False	NA	NA	NA	59093349	59096957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_59093486_59095381_59095584_59096474
65795	chr9	-	879	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	33	2449	9	-3	multi-exon	FALSE	canonical	3	36	junction_2	10	564	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTGTCTTAGTCACTGT	NA	False	NA	NA	False	NA	NA	NA	122780032	122776602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_122777174_122777989_122778135_122779869
65796	chr13	-	2802	6	NIC	ENSMUSG00000021592.19	novel	3657	8	NA	NA	4	-303	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	11.6619037896906	4	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTAGTTTTCAATGTTG	9879	False	NA	NA	False	NA	NA	NA	76246676	76208843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_76210722_76213398_76213624_76214753_76214979_76239776_76239937_76242006_76242137_76246492
65797	chr2	-	625	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11238	175	multi-exon	FALSE	canonical	0	0	junction_1	0	1	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCACCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426079	11413666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414192_11425979
65800	chr9	+	1581	9	ISM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	-116	3027	-14	-12	5prime_fragment	FALSE	canonical	3	173	junction_2	10.9022646729934	7	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAAATTTAAATTTTAT	NA	False	NA	NA	False	NA	NA	NA	44684333	44698850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134
65801	chr8	+	1519	1	Antisense	novelGene_ENSMUSG00000036534.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACCAGCTGTAGGGCAGA	NA	False	NA	NA	False	NA	NA	NA	96562772	96564291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_96562800_96564300
65804	chr5	+	1808	14	NNC	ENSMUSG00000029095.18	novel	660	8	NA	NA	28099	-4	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	22.6109362448755	33	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGACCTCCCAAACAGCC	NA	False	NA	NA	False	NA	NA	NA	35943493	36015526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_35943629_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169
65806	chr7	+	1656	13	Antisense	novelGene_ENSMUSG00000098540.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	68	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCTGTCCTTAAGG	NA	False	NA	NA	False	NA	NA	NA	126174224	126183561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126174258_126174372_126174593_126176964_126177099_126178352_126178489_126178572_126178645_126179314_126179408_126179515_126179584_126179963_126180039_126180805_126180919_126181938_126182014_126182172_126182280_126182481_126182790_126183339
65807	chrX	-	1029	2	NNC	ENSMUSG00000072100.5	novel	1079	2	NA	NA	-21780	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	32	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGTCAGAGTATATAAT	1183	False	NA	NA	False	NA	NA	NA	153695043	153669797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_153670743_153694959
65808	chr5	-	1132	8	NNC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	102.434249693177	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCCTGGTTTTGTATAGG	NA	False	NA	NA	False	NA	NA	NA	110255041	110251841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253113_110253224_110254131_110254203_110254518_110254650_110254925
65810	chr2	-	1182	6	Antisense	novelGene_ENSMUSG00000027163.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	635	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTCACGTGACAGCCGGA	NA	False	NA	NA	False	NA	NA	NA	101731991	101716607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_101716663_101725477_101725604_101727382_101727523_101729210_101729247_101730211_101730316_101731270
65811	chr14	-	2300	1	NIC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	-450	654	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCTACTGCCCAAACACT	NA	False	NA	NA	False	NA	NA	NA	66065106	66062806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_66062800_66065100
65813	chr5	+	1017	5	FSM	ENSMUSG00000029404.16	ENSMUST00000122394.8	982	5	49	-84	49	-11	multi-exon	FALSE	canonical	3	15	junction_1	259.116286635943	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTTGGTCACAGAGTTC	NA	False	NA	NA	False	NA	NA	NA	124254233	124256243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124254588_124254977_124255257_124255333_124255452_124255892_124255963_124256047
65814	chr11	-	1174	8	NNC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	6	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	65.5893221772681	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTGCATTGATTCCTTT	NA	False	NA	NA	False	NA	NA	NA	113600837	113588999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600737
65815	chrX	+	1301	6	NNC	ENSMUSG00000031221.8	novel	1518	6	NA	NA	17	-121	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	148.395956818237	1	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTATCCGCTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99537977	99559610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99538163_99538510_99538797_99546607_99546797_99548795_99548876_99549545_99549659_99559162
65816	chr11	+	838	1	Genic_Genomic	ENSMUSG00000057219.12	novel	NA	NA	NA	NA	7341	355	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAAGTATTTCTCTTGTA	NA	False	NA	NA	False	NA	NA	NA	115374120	115374958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_115374100_115375000
65817	chr6	+	766	3	NNC	ENSMUSG00000004264.18	novel	734	3	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1299	11	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	124692283	124693913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124692623_124692916_124692999_124693568
65818	chr11	-	789	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	17	189	-3	154	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	647	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTGGCCTCTCTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	5657670	5654171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
65819	chr14	+	1282	3	Intergenic	novelGene_542	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	29.5	113	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGCAGTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	34496513	34500223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_34496610_34498763_34498875_34499148
65821	chr9	-	2795	13	NNC	ENSMUSG00000010660.4	novel	2715	15	NA	NA	108	0	intron_retention	FALSE	non_canonical	0	0	junction_7	12.5299640861417	1	134	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	2946	False	NA	NA	False	NA	NA	NA	118922462	118900594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118903392_118903477_118903809_118903972_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118922425
65822	chr2	+	1701	1	Intergenic	novelGene_2713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTTTGCTCTCAGTTGGA	NA	False	NA	NA	False	NA	NA	NA	131964943	131966644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_131964900_131966600
65824	chr18	-	1644	1	ISM	ENSMUSG00000033184.15	ENSMUST00000143178.2	7982	2	9931	3	9729	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAATTGCCTTCACTTGT	7703	False	NA	NA	False	NA	NA	NA	46720652	46719008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_46719000_46720700
65825	chr5	-	871	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	10	2	0	-2	multi-exon	FALSE	canonical	3	166	junction_2	27	1379	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCTGAGACATCATGGGC	7323	False	NA	NA	False	NA	NA	NA	139812630	139809348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_139809829_139811882_139812120_139812476
65826	chr15	+	939	3	NNC	ENSMUSG00000055041.9	novel	1037	2	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	57	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTAAAAACATGTTATTC	NA	False	NA	NA	False	NA	NA	NA	76784140	76785495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76784193_76784551_76784999_76785055
65827	chr13	+	1212	8	Antisense	novelGene_ENSMUSG00000021484.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACTTCCGCCTTCCGGG	NA	False	NA	NA	False	NA	NA	NA	55494555	55510431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_55494851_55496127_55496252_55498971_55499083_55499192_55499331_55499523_55499603_55500757_55500865_55509925_55510055_55510202
65828	chr6	-	1642	8	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-14	-2	combination_of_known_junctions	FALSE	canonical	3	30	junction_4	183.177063888179	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACATGTTACAGTCAAAA	1883	False	NA	NA	False	NA	NA	NA	83031566	83028266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029708_83030018_83030052_83030309_83030505_83030593_83030799_83030901
65829	chr8	-	1231	3	Intergenic	novelGene_1646	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2	8	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTTTGTTGCGTCT	8696	False	NA	NA	False	NA	NA	NA	52188473	52184666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_52185587_52186968_52187093_52188286
65831	chr13	-	1695	9	NIC	ENSMUSG00000021432.16	novel	2216	10	NA	NA	1	-37	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	8.40293847412915	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAATGTATTAAT	NA	False	NA	NA	False	NA	NA	NA	39144471	39116152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139624_39139913_39144407
65832	chr14	-	1245	3	FSM	ENSMUSG00000041625.16	ENSMUST00000162164.2	609	3	-22	-614	13	-1	multi-exon	FALSE	canonical	3	7	junction_2	16.5	419	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTGCTGTTGCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	123150519	123128283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_123129229_123137887_123137945_123150276
65833	chr3	+	2424	3	FSM	ENSMUSG00000053769.6	ENSMUST00000066386.6	2394	3	-28	-2	-28	2	multi-exon	FALSE	canonical	1	7	junction_2	5.5	61	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTTAGTGGTTTTATT	8583	False	NA	NA	False	NA	NA	NA	95041370	95046831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95042308_95044935_95045298_95045706
65834	chr14	+	1998	17	Antisense	novelGene_ENSMUSG00000025557.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCGAAGCAACCCTGACAAA	NA	False	NA	NA	False	NA	NA	NA	121697060	121728710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_121697506_121703334_121703405_121703538_121703630_121708677_121708735_121710410_121710573_121711975_121712078_121713376_121713462_121715476_121715571_121717344_121717470_121718066_121718154_121719160_121719242_121722259_121722344_121724048_121724133_121724400_121724501_121727195_121727324_121728413_121728547_121728640
65835	chr17	+	804	3	NNC	ENSMUSG00000024014.9	novel	1578	5	NA	NA	-315	145	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	939.5	3	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAACTAGCACCATATT	NA	False	NA	NA	False	NA	NA	NA	29710854	29714083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29710962_29712695_29712873_29713563
65837	chr11	+	2038	1	Genic_Genomic	ENSMUSG00000020300.15	novel	NA	NA	NA	NA	-1292	-58621	mono-exon	FALSE	NA	NA	NA	NA	NA	9	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGATCGGGCCTCTCTC	NA	False	NA	-97	True	NA	NA	NA	31820918	31822956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_31820900_31823000
65839	chr4	-	1557	12	NNC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	-26	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	26.0238288770405	1	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCATTGCCCAAACTGC	4279	False	NA	NA	False	NA	NA	NA	135221843	135179635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199289_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218311_135218594_135221740
65840	chr17	-	1418	3	NNC	ENSMUSG00000045378.6	novel	1019	3	NA	NA	154	0	intron_retention	FALSE	canonical	2	3	junction_2	12.5	57	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTCTGTGTGTCTCTTTT	6367	False	NA	NA	False	NA	NA	NA	29161084	29152957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29153781_29160215_29160344_29160617
65841	chr16	+	1133	13	NNC	ENSMUSG00000005262.14	novel	2078	13	NA	NA	9	-52	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	175.065761453613	2	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGGCTTACAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	18631059	18653102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18631168_18633579_18633713_18634078_18634112_18635024_18635087_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
65842	chr18	+	2763	1	NIC	ENSMUSG00000033107.7	novel	1348	6	NA	NA	61	-36276	mono-exon	FALSE	NA	NA	NA	NA	NA	6	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTCCCTCCCTCCCTCC	5402	False	NA	NA	False	NA	NA	NA	21077742	21080505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_21077700_21080500
65843	chr11	-	1808	2	NNC	ENSMUSG00000087259.8	novel	1861	3	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	30	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCTGTAAATGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	113092666	112934728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_112935987_113092116
65844	chr7	-	2017	2	ISM	ENSMUSG00000030757.14	ENSMUST00000042470.14	7831	7	5577	12929	5577	5901	internal_fragment	FALSE	canonical	3	17	junction_1	0	6	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTAGTCCAACTTTAA	NA	False	NA	NA	False	NA	NA	NA	123094095	123087535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_123089486_123094028
65845	chr17	-	1286	9	NNC	ENSMUSG00000035521.14	novel	2249	11	NA	NA	0	-104	intron_retention	FALSE	canonical	0	0	junction_8	57.5650447320247	22	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCATACTGATAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	25459098	25453394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454885_25458748_25458817_25458887_25458946_25459029
65847	chr9	+	1442	4	FSM	ENSMUSG00000042073.16	ENSMUST00000048527.15	1745	4	296	7	18	-4	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	38	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTCACATGCTTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	106325869	106330115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106325909_106327202_106327431_106328591_106328834_106329182
65848	chr9	+	1770	8	ISM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	7570	24489	7282	-3702	internal_fragment	FALSE	canonical	3	490	junction_2	38.0466952626396	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGACCCTAACCTCAGT	6612	False	NA	NA	False	NA	NA	NA	103189983	103203138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840
65852	chr7	+	1590	3	ISM	ENSMUSG00000063160.13	ENSMUST00000134215.2	3153	9	15473	-157	15473	-3	3prime_fragment	FALSE	canonical	3	88	junction_1	8	26	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGCCACTGGGAAATCAAG	NA	False	NA	NA	False	NA	NA	NA	26976275	26981563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_26976358_26978928_26979052_26980178
65853	chr5	-	1187	5	Antisense	novelGene_ENSMUSG00000029651.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	8.86002257333467	3	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATAGTGGGGTAGTATAC	8595	False	NA	NA	False	NA	NA	NA	147949138	147941090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_147941718_147943327_147943469_147943860_147944081_147945259_147945334_147949013
65855	chr1	-	1801	6	NNC	ENSMUSG00000048234.14	novel	2492	7	NA	NA	-6563	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.7316053826011	2	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCTATGTAACAAATTT	4207	False	NA	NA	False	NA	NA	NA	39604401	39590376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_39591506_39594567_39594752_39597395_39597493_39599773_39599857_39603128_39603198_39604162
65856	chr19	+	696	5	NNC	ENSMUSG00000024661.8	novel	1494	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2444.09670174893	4	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTCTTTTCTTTGTGA	4927	False	NA	NA	False	NA	NA	NA	9960067	9962454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144_9962228_9962394
65857	chr11	+	1952	1	ISM	ENSMUSG00000048834.17	ENSMUST00000109645.9	3264	5	24168	343	18674	-343	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAACATACAAATGTATTT	NA	False	NA	NA	False	NA	NA	NA	16231891	16233843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_16231900_16233800
65858	chr19	-	1399	4	ISM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	85	3	63	-2	intron_retention	FALSE	canonical	3	249	junction_3	4.10960933531265	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGCATGGATTTCTTGA	5159	False	NA	NA	False	NA	NA	NA	8751746	8749891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868
65859	chr18	+	756	4	FSM	ENSMUSG00000014504.17	ENSMUST00000119329.8	613	4	-13	-130	0	0	multi-exon	FALSE	canonical	3	7	junction_2	851.206594585983	29	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATTTTGTTCATCTTTA	NA	False	NA	NA	False	NA	NA	NA	34464197	34469604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_34464313_34464802_34464879_34467509_34467622_34469151
65860	chrX	+	1745	2	FSM	ENSMUSG00000033578.8	ENSMUST00000037687.8	1918	2	173	0	173	0	multi-exon	FALSE	canonical	1	1	junction_1	0	33	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGGTGTGGATATGGA	NA	False	NA	NA	False	NA	NA	NA	133196146	133206718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133196379_133205205
65861	chr7	-	2101	4	ISM	ENSMUSG00000030402.6	ENSMUST00000032560.6	1648	5	234	32	-229	5	intron_retention	FALSE	canonical	3	13	junction_1	6.12825877028341	3	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTTACTTAATAAAAGTA	9789	False	NA	NA	False	NA	NA	NA	19013755	19010761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194
65862	chrX	-	1579	2	Genic_Genomic	ENSMUSG00000080069.3	novel	1023	1	NA	NA	-9124	421	multi-exon	FALSE	canonical	3	7	junction_1	0	66	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCGTAAACATTAAACATACA	NA	False	NA	NA	False	NA	NA	NA	85398575	85388007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_85389513_85398501
65863	chr19	-	1360	8	NNC	ENSMUSG00000059326.8	novel	1849	12	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	51.1600130842	19	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGCTTTTGTTTTC	9808	False	NA	NA	False	NA	NA	NA	61216867	61212844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214064_61215253_61215365_61215467_61215623_61215709_61215804_61216776
65866	chr7	-	1233	1	NIC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-3	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	296	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	NA	False	NA	NA	NA	4756025	4754792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_4754800_4756000
65868	chr13	+	769	1	ISM	ENSMUSG00000097027.3	ENSMUST00000181939.3	2481	2	2901	1462	2901	-1462	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACGGTAACACATCTATC	NA	False	NA	NA	False	NA	NA	NA	99656037	99656806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_99656000_99656800
65869	chr13	+	1443	1	ISM	ENSMUSG00000097027.3	ENSMUST00000181939.3	2481	2	3670	19	3670	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	3	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGTAGTGAGCAGAATGTA	NA	False	NA	NA	False	NA	NA	NA	99656806	99658249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_99656800_99658200
65870	chr1	+	1744	1	NIC	ENSMUSG00000026113.18	novel	5691	26	NA	NA	2310	1650	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGGAGTGGCACCAACC	9442	False	NA	NA	False	NA	NA	NA	37419062	37420806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_37419100_37420800
65871	chr7	+	728	6	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	-11	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1078.23752485248	887	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGGTGCCTATTGCT	8520	False	NA	NA	False	NA	NA	NA	27869123	27878697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27869244_27873928_27874037_27876601_27876701_27877629_27877743_27878322_27878469_27878555
65872	chr13	+	2479	16	ISM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	3384	630	-93	-630	3prime_fragment	FALSE	canonical	2	5	junction_2	3.58143360495021	1	73	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGAGCCAAGCCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	55303836	55315942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55304308_55304398_55304480_55304586_55304754_55306906_55307031_55307735_55307927_55308061_55308201_55308928_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
65873	chr11	+	667	1	Intergenic	novelGene_2483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAGTTGCCTTGGTCATG	803	False	NA	NA	False	NA	NA	NA	102269586	102270253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_102269600_102270300
65874	chr15	-	2125	2	NNC	ENSMUSG00000048154.18	novel	19805	55	NA	NA	3015	-276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	33	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTGACAAGTGTGAACCC	9351	False	NA	NA	False	NA	NA	NA	98732030	98729828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98730411_98730487
65878	chr16	-	1520	8	NNC	ENSMUSG00000022805.18	novel	3048	17	NA	NA	23152	-2	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_6	14.2571142284282	90	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACGTTGTTTGTAAAG	NA	False	NA	NA	False	NA	NA	NA	38139022	38118117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38131353_38131471_38138841
65879	chr15	+	2198	1	ISM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	4864	0	4771	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGTTATTCTGGAATCA	NA	False	NA	NA	False	NA	NA	NA	76599701	76601899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76599700_76601900
65880	chr2	+	869	6	NNC	ENSMUSG00000027374.13	novel	3228	11	NA	NA	0	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	543.063384882465	12	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCACATGGTATATAGC	4164	False	NA	NA	False	NA	NA	NA	127429338	127445902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436467_127444321_127444442_127445548
65884	chr12	+	1084	7	NNC	ENSMUSG00000021134.18	novel	1527	8	NA	NA	1	-332	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	858.166213504121	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAAGCCTTCTGCTCACA	NA	False	NA	NA	False	NA	NA	NA	80992359	80996939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80992447_80993349_80993492_80994084_80994156_80994269_80994369_80994569_80994698_80996267_80996379_80996493
65885	chr17	+	1196	3	NNC	ENSMUSG00000023939.8	novel	645	3	NA	NA	43	-17	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	548	12	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTTTTCTTCCTATAC	NA	False	NA	NA	False	NA	NA	NA	45997325	46009404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45998000_46006407_46006499_46008973
65887	chr2	-	1809	1	Intergenic	novelGene_2646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGTGGCTCACAACCATC	NA	False	NA	NA	False	NA	NA	NA	70513167	70511358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_70511400_70513200
65888	chr5	-	1696	14	FSM	ENSMUSG00000029454.16	ENSMUST00000031410.14	2234	14	524	14	-150	0	multi-exon	FALSE	canonical	0	0	junction_9	50.8494703910793	168	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGCTTAAAGTTGCTA	NA	False	NA	NA	False	NA	NA	NA	121683444	121663114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153_121665285_121666932_121667054_121669595_121669784_121671371_121671453_121672397_121672494_121673916_121674007_121675174_121675284_121676455_121676554_121677234_121677311_121678564_121678639_121683227
65889	chr13	+	1330	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220884.2	772	7	-71	1589	5	-13	5prime_fragment	FALSE	canonical	3	67	junction_1	29.0387671914632	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCACATTTCACTTTTA	NA	False	NA	NA	False	NA	NA	NA	63387850	63447457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525
65891	chr11	+	859	6	FSM	ENSMUSG00000020485.15	ENSMUST00000152700.8	854	6	-11	6	-11	0	multi-exon	FALSE	canonical	3	12	junction_2	256.77351888386	279	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	NA	False	NA	NA	NA	87628366	87634443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87628495_87628992_87629100_87631330_87631473_87633621_87633678_87633883_87633938_87634071
65892	chr11	+	1106	3	Antisense	novelGene_ENSMUSG00000020865.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCCACAC	NA	False	NA	NA	False	NA	NA	NA	94234114	94242185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_94234601_94236771_94236973_94241766
65893	chr11	-	810	2	NNC	ENSMUSG00000007777.10	novel	813	2	NA	NA	-208	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	39	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGTATGAATGCTTT	4755	False	NA	NA	False	NA	NA	NA	51579909	51576210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51576920_51579808
65894	chr8	-	712	1	NIC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	62	-5903	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTTCCACACAACCTTT	NA	False	NA	NA	False	NA	NA	NA	70078134	70077422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70077400_70078100
65895	chr8	+	896	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	6	0	6	0	multi-exon	FALSE	canonical	3	920	junction_1	163	1032	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	85753457	85756915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85753864_85756167_85756246_85756503
65896	chr14	+	1309	3	Intergenic	novelGene_543	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_2	17	124	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGCAGTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	34496526	34500223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_34496610_34498763_34498915_34499148
65898	chr6	-	1250	8	NNC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	27	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	823.512635740636	1	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTCTCTGTCCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	124942448	124935418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938314_124939320_124939410_124939584_124939661_124941686_124941892_124942336
65899	chr11	-	1080	6	NNC	ENSMUSG00000011254.17	novel	2250	6	NA	NA	-1	-1121	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	46.8427155489517	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTTTTTAAAAAAAAAA	6311	False	NA	NA	False	NA	NA	NA	45846311	45838790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845021_45846101
65902	chr14	+	1863	5	FSM	ENSMUSG00000022064.11	ENSMUST00000228279.2	1993	5	25	105	25	-105	multi-exon	FALSE	canonical	3	99	junction_3	8.15475321515004	12	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGAGGTGCTGCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	99337418	99351548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405
65903	chr11	+	1721	5	FSM	ENSMUSG00000020834.18	ENSMUST00000021187.12	1779	5	54	4	-15	-2	multi-exon	FALSE	canonical	3	80	junction_1	5.93190525885234	49	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGCTCTGGCTCCCGCC	NA	False	NA	NA	False	NA	NA	NA	77923159	77928688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_77923325_77923410_77923530_77924838_77924963_77925100_77925413_77927687
65906	chr8	-	1324	7	NNC	ENSMUSG00000031617.17	novel	2678	10	NA	NA	5835	-579	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	31.7909840468436	1	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAGAACGCAATTCCTGA	NA	False	NA	NA	False	NA	NA	NA	78331447	78323189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_78323810_78324437_78324610_78325182_78325236_78326285_78326399_78328043_78328138_78329486_78329562_78331250
65907	chr10	+	765	4	NNC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	102	0	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_3	1112.25186995672	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	4602	False	NA	NA	False	NA	NA	NA	79978305	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79978441_79979665_79979820_79981052_79981142_79981260
65909	chr5	+	2576	2	FSM	ENSMUSG00000070576.5	ENSMUST00000094463.5	6860	2	4272	12	4272	-12	multi-exon	FALSE	canonical	3	6	junction_1	0	31	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGGGGCATGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	111569579	111604887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_111569750_111602481
65910	chr2	+	1486	9	NIC	ENSMUSG00000027593.16	novel	1802	10	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	44.2965856472031	540	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	NA	False	NA	NA	NA	154633003	154709164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_154633152_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
65911	chr3	-	752	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	48	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	79.9112354775945	139	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	84063045	83995239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_83995482_84000861_84000907_84012241_84012357_84041324_84041474_84045475_84045534_84049005_84049072_84062968
65912	chr18	-	1593	1	Intergenic	novelGene_4567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACACCTGCGTCTCTGGCTC	NA	False	NA	NA	False	NA	NA	NA	75382259	75380666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_75380700_75382300
65913	chr7	-	954	5	NIC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	-1	46	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	30.0863341070327	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCACTGATCCCT	NA	False	NA	NA	False	NA	NA	NA	127534687	127532027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561_127533800_127534618
65914	chr7	+	1037	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	38	1	38	-1	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATCTGTTCTTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	139616362	139620514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
65915	chr11	+	927	4	FSM	ENSMUSG00000036860.15	ENSMUST00000045697.12	940	4	18	-5	5	5	multi-exon	FALSE	canonical	3	484	junction_1	41.3467720088952	2647	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTCAGACCTCTGGGTT	NA	False	NA	NA	False	NA	NA	NA	59093335	59096965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_59093486_59094997_59095082_59095381_59095584_59096474
65916	chr16	+	1274	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229206.2	1316	11	42	0	31	0	multi-exon	FALSE	canonical	3	21	junction_9	24.8766959220874	81	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	NA	False	NA	NA	NA	49676049	49731444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
65917	chr7	+	1970	11	NIC	ENSMUSG00000062031.14	novel	2981	14	NA	NA	648	90	intron_retention	FALSE	canonical	3	43	junction_1	11.7711511756497	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCCCCAACCTCACAACC	NA	False	NA	NA	False	NA	NA	NA	140522915	140526847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
65922	chr11	-	3093	1	Intergenic	novelGene_2532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	84	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTTTGATTTCCAGCAC	7910	False	NA	NA	False	NA	NA	NA	116079044	116075951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_116076000_116079000
65923	chr1	+	565	4	NNC	ENSMUSG00000025967.17	novel	681	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1440.36507717854	41	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216290	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217015_63218428_63218533_63218616
65924	chr11	-	743	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	-8	12	-8	-12	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	2343	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTGTCAACTGGCGTG	NA	False	NA	NA	False	NA	NA	NA	98329825	98328545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
65928	chr10	-	1109	5	NIC	ENSMUSG00000040521.12	novel	1206	6	NA	NA	-2	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	426.165094182994	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATAGTGCTTAATGTG	NA	False	NA	NA	False	NA	NA	NA	126866711	126858211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_126858796_126864233_126864357_126865422_126865552_126866331_126866506_126866612
65933	chr2	+	782	3	Antisense	novelGene_ENSMUSG00000032715.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGCTGGGGGGCAGC	1608	False	NA	NA	False	NA	NA	NA	152179341	152185087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_152179695_152181633_152181939_152184963
65934	chr11	-	2669	1	Antisense	novelGene_ENSMUSG00000020492.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGACATTCCTCAGACCG	NA	False	NA	NA	False	NA	NA	NA	87002759	87000090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_87000100_87002800
65936	chr14	+	1247	8	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	66	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	430.220541450213	1	77	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTTTAATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	8348895	8357578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349025_8349570_8349781_8352808_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
65939	chr3	-	437	4	ISM	ENSMUSG00000027957.14	ENSMUST00000153108.6	815	5	17393	33	17393	-33	3prime_fragment	FALSE	canonical	3	177	junction_1	7.58653778449403	2	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGTCAGTATGGATAAGG	NA	False	NA	NA	False	NA	NA	NA	116488098	116474786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_116474926_116480710_116480834_116480919_116481075_116488078
65940	chr11	+	1319	3	NNC	ENSMUSG00000048497.12	novel	343	2	NA	NA	14	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7.5	92	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTCTGTGTCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	62539503	62557182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62539643_62555495_62556063_62556569
65941	chr16	+	2149	7	FSM	ENSMUSG00000022793.18	ENSMUST00000114712.8	2168	7	18	1	-12	-1	multi-exon	FALSE	canonical	3	9	junction_1	7.60847480700888	22	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTCTTGGTCTTGTTTTT	3932	False	NA	NA	False	NA	NA	NA	38562645	38589209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_38562798_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
65942	chr11	-	857	5	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	3	-5	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	243.939029267561	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTTTATGAAGAACATAAT	7239	False	NA	NA	False	NA	NA	NA	68864666	68863328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_68863568_68863709_68863855_68863942_68864100_68864266_68864384_68864467
65945	chr7	-	667	7	NNC	ENSMUSG00000074129.15	novel	562	7	NA	NA	0	90	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7141.34426537936	3	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGGGATGAATCAGTTGA	NA	False	NA	NA	False	NA	NA	NA	44778160	44775205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775412_44775538_44775662_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
65946	chr5	+	2499	3	Intergenic	novelGene_801	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	45	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTACTGTCTTAAATTTAT	NA	False	NA	NA	False	NA	NA	NA	109851446	109867046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_109851613_109859367_109859496_109864841
65947	chr2	-	1272	1	ISM	ENSMUSG00000038844.11	ENSMUST00000230763.2	6404	27	281880	894	29124	343	mono-exon	FALSE	NA	NA	NA	NA	NA	43	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAACGGACTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	142461559	142460287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_142460300_142461600
65948	chrX	+	1622	4	FSM	ENSMUSG00000031179.15	ENSMUST00000033522.15	1649	4	18	9	18	-9	multi-exon	FALSE	canonical	2	4	junction_1	1.69967317119759	36	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCGTGTATCTATGTTTAG	NA	False	NA	NA	False	NA	NA	NA	63217171	63222375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_63217298_63219533_63219620_63220397_63220469_63221036
65950	chr7	-	524	1	NIC	ENSMUSG00000040564.15	novel	532	3	NA	NA	530	783	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGCAGTGGTGGCGCA	NA	False	NA	NA	False	NA	NA	NA	19425886	19425362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_19425400_19425900
65951	chr12	+	2425	8	NNC	ENSMUSG00000052632.17	novel	5678	29	NA	NA	142434	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	32.2566240626382	1	67	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAGTACTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	21304388	21320149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21304469_21306475_21306611_21308010_21308177_21315131_21315182_21315463_21315535_21315888_21316012_21317718_21318868_21319498
65952	chr3	-	978	2	Antisense	novelGene_ENSMUSG00000054091.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5347	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAACCCCGCCAATCGAC	NA	False	NA	NA	False	NA	NA	NA	122719833	122718032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_122718303_122719125
65953	chr13	-	1917	8	FSM	ENSMUSG00000042118.8	ENSMUST00000015941.8	2467	8	15	535	15	-535	multi-exon	FALSE	canonical	3	8	junction_1	2.60298102261266	31	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAGTAGCTTGAATGGCA	NA	False	NA	NA	False	NA	NA	NA	93810795	93792762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_93793653_93798809_93799039_93799653_93799837_93800181_93800330_93803081_93803274_93805762_93805855_93807920_93808054_93810745
65954	chr1	-	3368	1	ISM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	46425	14	4667	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	11	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAAAAAACCCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	156255476	156252108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_156252100_156255500
65955	chr7	+	1087	1	ISM	ENSMUSG00000050917.6	ENSMUST00000060336.5	3030	3	2762	9	2762	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	23	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGCAAGCACCTGTG	66	False	NA	NA	False	NA	NA	NA	144417884	144418971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_144417900_144419000
65956	chr5	+	1261	9	FSM	ENSMUSG00000016503.19	ENSMUST00000146511.8	1298	9	28	9	-13	-1	multi-exon	FALSE	canonical	3	398	junction_8	56.9906790624572	147	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCGACTCTTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	146885494	146892415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892177
65957	chrX	-	1475	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114472.8	1532	12	48	9	48	-9	multi-exon	FALSE	canonical	3	38	junction_11	13.5176652099123	205	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAACCATGCTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	72703675	72699609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
65958	chr8	+	2263	1	Intergenic	novelGene_1784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATGATCACTGCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	124533539	124535802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_124533500_124535800
65959	chr6	-	904	2	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTCTCAGTCAGAC	NA	False	NA	NA	False	NA	NA	NA	83294570	83282672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283417_83294410
65960	chr18	-	686	7	Antisense	novelGene_ENSMUSG00000024260.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGCTGAGACTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	31813441	31786621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_31786678_31799391_31799540_31799686_31799777_31799954_31800062_31807406_31807548_31810406_31810528_31813418
65961	SIRV7	-	914	5	NIC	SIRV7A	novel	889	6	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	1736.72714825905	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV7_-_56098_70883_70988_78841_78964_114686_114961_147608
65962	chr11	-	626	5	NNC	ENSMUSG00000020857.12	novel	1012	5	NA	NA	-96	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3081.54092947019	1	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCAGTGTTCAGTACTC	NA	False	NA	NA	False	NA	NA	NA	93846705	93840640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_93840868_93842725_93842839_93843625_93843728_93846320_93846451_93846651
65963	chr8	+	1397	8	NNC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	-119	-1934	intron_retention	FALSE	non_canonical	0	0	junction_6	70.9193275518611	2	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGAGCCTCGTGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	72021406	72037415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72021436_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033521_72036761_72036970_72037063_72037191_72037276
65964	chr4	+	492	1	Antisense	novelGene_ENSMUSG00000057236.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCTCAAACCAATGTTAAA	NA	False	NA	NA	False	NA	NA	NA	129203314	129203806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129203300_129203800
65965	chr2	+	1441	4	FSM	ENSMUSG00000048707.10	ENSMUST00000114336.4	2787	4	1346	0	-277	0	multi-exon	FALSE	canonical	3	142	junction_1	10.4986771653491	64	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTTGCCTTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	25153975	25159897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25154566_25158843_25159058_25159144_25159252_25159367
65966	chr13	-	1089	4	FSM	ENSMUSG00000043190.15	ENSMUST00000179078.9	1436	4	93	254	-15	-7	multi-exon	FALSE	canonical	0	0	junction_3	36.2981481009094	138	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATATTTTAAAGTAATT	NA	False	NA	NA	False	NA	NA	NA	76166696	76150892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166133
65967	chr15	+	1640	7	FSM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	24	382	19	-378	multi-exon	FALSE	canonical	3	36	junction_2	6.64371047599825	2	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGGATACTGTAGCTGG	NA	False	NA	NA	False	NA	NA	NA	82012146	82026022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015945_82016031_82018781_82018964_82019270_82019343_82025066
65968	chr17	+	2748	1	Intergenic	novelGene_271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTCCCCACCCCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	57100312	57103060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_57100300_57103100
65973	chr2	+	1522	2	ISM	ENSMUSG00000067847.14	ENSMUST00000088610.11	569	3	48	11	48	3	intron_retention	FALSE	canonical	3	748	junction_1	0	9	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCGTTATATCAGTCTATT	6399	False	NA	NA	False	NA	NA	NA	155986006	155987706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_155986201_155986378
65975	chr5	+	2190	13	Antisense	novelGene_ENSMUSG00000107109.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	28	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAGCCCGACGGGCGC	NA	False	NA	NA	False	NA	NA	NA	73275233	73413917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_73275932_73277163_73277264_73279208_73279299_73279554_73279727_73282026_73282107_73282857_73282938_73289813_73289911_73290588_73290729_73293661_73293721_73305360_73305572_73352333_73352457_73378250_73378419_73413745
65976	chr1	+	1047	5	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5488	17	264	-17	3prime_fragment	FALSE	canonical	3	46	junction_1	20.1912728672563	363	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATCCAGGTTTCCAAT	3835	False	NA	NA	False	NA	NA	NA	135733058	135738710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
65977	chr17	+	669	5	NNC	ENSMUSG00000046711.17	novel	1030	5	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2226.4405449057	1	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAGATCCCAGCATGTCC	NA	False	NA	NA	False	NA	NA	NA	27775623	27781897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778678_27779901_27779986_27780434_27780490_27781638
65978	chr1	+	681	1	ISM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	3291	15	3210	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	35	True	NA	NA	NA	86457738	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_86457700_86458400
65980	chr7	+	769	8	NNC	ENSMUSG00000078765.12	novel	884	8	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_5	190.298262134546	3	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	30262789	30264785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263964_30264033_30264127_30264224_30264519
65981	chr13	-	1132	9	Antisense	novelGene_ENSMUSG00000021548.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	56	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAACGCGCGAACCCCCG	NA	False	NA	NA	False	NA	NA	NA	85361017	85337582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_85337769_85338869_85339005_85344375_85344445_85345469_85345690_85350472_85350606_85354250_85354325_85356913_85357005_85359968_85360032_85360856
65982	chrX	-	1131	7	NNC	ENSMUSG00000046032.17	novel	1114	6	NA	NA	0	-31	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	205.922113107521	12	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGTTATAGATTAATAAAG	NA	False	NA	NA	False	NA	NA	NA	100266155	100141422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100141834_100145973_100146042_100179782_100179835_100257379_100257471_100258006_100258132_100259088_100259185_100265867
65983	chr11	-	549	3	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2072	3	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAAGGACCACAGATTCG	9654	False	NA	NA	False	NA	NA	NA	106679320	106676254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106676363_106677681_106677901_106679098
65984	chr10	+	1747	8	ISM	ENSMUSG00000003345.17	ENSMUST00000079773.14	2348	11	15171	20	-261	-20	3prime_fragment	FALSE	canonical	3	651	junction_5	46.3922935190661	92	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAGAAAAGAAAAACA	NA	False	NA	NA	False	NA	NA	NA	80473842	80476555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
65985	chr11	-	1146	4	ISM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	40875	0	-915	0	intron_retention	FALSE	canonical	3	69	junction_3	10.6249183003395	168	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	-10	True	NA	NA	False	NA	NA	NA	94242927	94234120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624
65987	chr1	-	1837	2	ISM	ENSMUSG00000103708.2	ENSMUST00000193725.2	654	3	7053	-1237	6999	1237	3prime_fragment	FALSE	canonical	3	7	junction_1	0	37	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTGCGCCAGAAAATAAAC	NA	False	NA	NA	False	NA	NA	NA	36043072	36040828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_36042488_36042894
65988	chr17	+	757	3	FSM	ENSMUSG00000002661.15	ENSMUST00000074141.14	736	3	8	-29	4	18	multi-exon	FALSE	canonical	3	32	junction_1	221	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGTCCTTTCCCTTCTT	375	False	NA	NA	False	NA	NA	NA	57304346	57306340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57304568_57305670_57305796_57305929
65990	chr11	+	570	4	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5686.78188628878	1	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTGTGTAGTCTTGAAG	4058	False	NA	NA	False	NA	NA	NA	100210811	100212358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100210987_100211491_100211599_100211803_100211876_100212142
65991	chr5	-	451	1	Intergenic	novelGene_855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAGCAAATTGTTAAATA	NA	False	NA	NA	False	NA	NA	NA	125520961	125520510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_125520500_125521000
65993	chr4	+	1878	7	ISM	ENSMUSG00000054752.17	ENSMUST00000180164.2	7340	13	36511	4975	36511	881	3prime_fragment	FALSE	canonical	3	17	junction_6	5.14511634681104	19	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTATATTGCTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	53679790	53702034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_53680004_53682099_53682199_53686387_53686518_53693983_53694085_53694607_53694860_53696889_53696979_53701040
65994	chr18	-	2833	12	Antisense	novelGene_ENSMUSG00000024560.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGAGCCGCGAAGGTCTC	NA	False	NA	NA	False	NA	NA	NA	74354556	74349342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_74349552_74350235_74350357_74350459_74351365_74351789_74352049_74352201_74352308_74352451_74352639_74352908_74353115_74353189_74353301_74353425_74353477_74353578_74353677_74353898_74354051_74354128
65995	chrX	+	1717	11	NNC	ENSMUSG00000039382.13	novel	955	8	NA	NA	150	-1	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	83.7708779946826	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAAGGGTGGGGCGTGCT	4866	False	NA	NA	False	NA	NA	NA	7589315	7594439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7589401_7590087_7590160_7590262_7590338_7590425_7590531_7591978_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
65996	chr10	+	1768	2	Antisense	novelGene_ENSMUSG00000040006.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAATCGCGCCTCCGAGG	2477	False	NA	NA	False	NA	NA	NA	7665885	7668566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_7667359_7668271
65998	chr4	+	2290	1	NIC	ENSMUSG00000028681.12	novel	4382	22	NA	NA	-1872	-436	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	71	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACCGCAACGGCTCAGAA	NA	False	NA	NA	False	NA	NA	NA	116965559	116967849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116965600_116967800
65999	chr8	-	1472	13	NIC	ENSMUSG00000056228.11	novel	1902	15	NA	NA	7421	2	combination_of_known_junctions	FALSE	canonical	1	3	junction_12	59.7529055546441	107	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAAAGTGGGCCTATGCT	NA	False	NA	NA	False	NA	NA	NA	11592970	11564018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580425_11587271_11587356_11591897_11592004_11592518_11592591_11592901
66000	chr4	+	665	4	NNC	ENSMUSG00000028936.16	novel	2051	4	NA	NA	6	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2000.16938171635	2	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACACATGGCTACTGTCA	NA	False	NA	NA	False	NA	NA	NA	152410331	152418514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152410353_152411937_152412003_152416736_152417075_152418273
66002	chr16	+	2652	1	Intergenic	novelGene_3658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTATCAAAATCACATCAA	NA	False	NA	NA	False	NA	NA	NA	46263086	46265738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_46263100_46265700
66003	chr1	-	737	4	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	178	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2864.98985842688	113	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4633	False	NA	NA	False	NA	NA	NA	55127005	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117418_55123875_55123945_55125924_55126101_55126937
66004	chr6	-	748	6	FSM	ENSMUSG00000030188.13	ENSMUST00000173198.8	561	6	1	-188	1	0	multi-exon	FALSE	canonical	2	2	junction_5	222.978563992147	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGGTTACATGGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	131270113	131261475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131268703_131268904_131270034
66005	chr19	-	1513	7	NNC	ENSMUSG00000059326.8	novel	1771	11	NA	NA	15	-7	intron_retention	FALSE	canonical	3	24	junction_5	41.5317816724601	114	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCAGAACATTTTCTG	9886	False	NA	NA	False	NA	NA	NA	61215106	61212855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_61213472_61213570_61213653_61213761_61214091_61214229_61214260_61214365_61214494_61214638_61214823_61214962
66006	chr15	-	1195	3	ISM	ENSMUSG00000062906.13	ENSMUST00000138245.2	911	7	916	-366	916	-1	intron_retention	FALSE	canonical	3	26	junction_2	6	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATCTCTGTCTCCGTTA	NA	False	NA	NA	False	NA	NA	NA	89008972	89007510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_89007928_89008021_89008205_89008377
66007	chr11	-	1238	7	NNC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	6	130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	20.8379994774504	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACCTTCAGAAGTATCT	NA	False	NA	NA	False	NA	NA	NA	84719784	84711551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716404_84719716
66010	chr8	+	1711	7	NNC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	8	-18	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	68.6601938696813	423	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATCTGCCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	96058919	96074117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96059094_96059995_96060163_96065261_96065446_96069770_96069804_96070584_96070691_96071916_96072001_96073154
66011	chr11	+	1138	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	-51	13	-51	-13	multi-exon	FALSE	canonical	3	224	junction_4	48.3922055248111	765	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGGCGAAAGAACCTCAAC	NA	False	NA	NA	False	NA	NA	NA	70860987	70868646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
66013	chr4	+	3414	10	NNC	ENSMUSG00000028876.8	novel	4660	15	NA	NA	7365	-61	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.16595429884644	7	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATATTTCTGGGTTCGA	1704	False	NA	NA	False	NA	NA	NA	124800559	124811532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124800641_124805799_124805859_124805975_124806172_124806912_124807099_124807445_124807508_124807717_124807922_124808155_124808306_124808473_124808668_124809071_124809228_124809406
66014	chr5	+	1759	2	FSM	ENSMUSG00000039156.20	ENSMUST00000202342.2	652	2	240	-1347	240	0	multi-exon	FALSE	canonical	3	224	junction_1	0	35	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTGTTGAATGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	54273438	54277276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_54273535_54275613
66015	chr14	+	650	1	ISM	ENSMUSG00000045211.6	ENSMUST00000089049.4	3926	3	1994	2291	1539	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCCTGCTTGCCTAAAT	NA	False	NA	NA	False	NA	NA	NA	70817070	70817720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_70817100_70817700
66016	chr12	+	2816	2	NNC	ENSMUSG00000034574.11	novel	3035	12	NA	NA	13	-89649	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATACAAAAGGTGTGACAC	1901	False	NA	NA	False	NA	NA	NA	71877949	71909485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71877971_71906690
66017	chr4	-	707	3	NNC	ENSMUSG00000085823.8	novel	714	2	NA	NA	-4	602	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	4.5	40	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAATGAATACCTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	137611252	137609078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137609451_137610538_137610721_137611099
66018	chr12	+	2172	1	ISM	ENSMUSG00000021268.18	ENSMUST00000146701.8	14548	5	21280	3428	16871	-3421	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGCTTTCTGCTGAGAG	NA	False	NA	NA	False	NA	NA	NA	109532560	109534732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_109532600_109534700
66019	chr6	-	1923	2	FSM	ENSMUSG00000050732.10	ENSMUST00000142613.2	2076	2	143	10	143	-10	multi-exon	FALSE	canonical	3	289	junction_1	0	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCCTAAGTGTACGAGG	9028	False	NA	NA	False	NA	NA	NA	72366751	72362220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72362637_72365244
66020	chr11	+	1238	5	NIC	ENSMUSG00000001313.13	novel	1578	6	NA	NA	33	-4	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	68.3245929369506	85	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCTATGGACTTAGTTT	7842	False	NA	NA	False	NA	NA	NA	101355857	101362675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101355971_101359758_101359847_101360838_101360949_101361543_101361679_101361883
66021	SIRV7	-	863	5	NNC	SIRV7A	novel	889	6	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_3	2066.85127367694	4	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_56098_70883_70988_78841_78964_114686_114961_147659
66022	chr4	-	1318	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5126.87041030702	1	76	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAGGTCTTAAATAATA	NA	False	NA	NA	False	NA	NA	NA	119151697	119135198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136390_119138766_119138850_119139351_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151569
66024	chr2	-	2091	18	FSM	ENSMUSG00000035236.18	ENSMUST00000038874.12	10709	18	3	8615	-1	-64	multi-exon	FALSE	canonical	2	5	junction_4	3.37403068228235	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTCTCAATCTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	39080743	38964840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38965169_38970088_38970190_38970385_38970560_38973549_38973623_38984714_38984797_38989387_38989488_38992332_38992412_38993214_38993317_38993675_38993778_38996931_38997085_38997219_38997319_38998318_38998416_39011122_39011222_39013015_39013103_39015101_39015198_39022966_39023099_39080000_39080046_39080601
66025	chr11	-	918	7	NIC	ENSMUSG00000018565.18	novel	1454	9	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	31	junction_3	199.363710060003	71	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAAAACCTCTGGTAAT	9889	False	NA	NA	False	NA	NA	NA	69871089	69859058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69859367_69859921_69860023_69860318_69860415_69865865_69866087_69870655_69870737_69870824_69870886_69871039
66026	chr7	+	1427	5	NIC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	307.934550675951	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	138470136	138484786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_138470237_138474729_138474781_138475848_138476014_138478184_138478447_138483937
66027	chr7	+	1129	13	ISM	ENSMUSG00000110195.2	ENSMUST00000209537.2	4100	31	51351	5093	254	-4800	internal_fragment	TRUE	canonical	1	1	junction_5	2.64968551593077	3	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACTGCCCAACTCTGGC	2919	False	NA	NA	False	NA	NA	NA	101151077	101156931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_101151136_101151220_101151263_101151740_101151810_101152018_101152150_101152505_101152618_101153030_101153071_101153178_101153243_101153584_101153658_101153777_101153956_101154163_101154277_101155125_101155204_101156302_101156426_101156883
66028	chr14	-	1014	2	NNC	ENSMUSG00000042354.8	novel	1033	2	NA	NA	-20	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	0	42	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCATGTGTTTAAGATTT	NA	False	NA	NA	False	NA	NA	NA	30741021	30734395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734913_30740524
66030	chr4	-	629	1	Intergenic	novelGene_1914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTCTTGTTTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	107736836	107736207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_107736200_107736800
66032	chr7	-	862	7	NNC	ENSMUSG00000102252.6	novel	1932	10	NA	NA	3	-620	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	765.808215039655	1	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCAATTGGGGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	59654856	59632869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633028_59636543_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
66035	chr5	-	1049	1	Intergenic	novelGene_889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGGTCTGATGTT	NA	False	NA	NA	False	NA	NA	NA	145081247	145080198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_145080200_145081200
66038	chr13	-	1531	3	ISM	ENSMUSG00000025453.19	ENSMUST00000133627.8	2340	5	12022	510	12022	-510	3prime_fragment	FALSE	canonical	3	213	junction_1	6.5	13	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAGAAATCTACGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	119533511	119524733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_119525818_119531146_119531365_119533282
66040	chr6	+	2119	6	NNC	ENSMUSG00000034430.17	novel	4126	10	NA	NA	12641	-25	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	29.1382909588054	37	25	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGTTCGAATGTTATGTG	NA	False	NA	NA	False	NA	NA	NA	90359240	90380447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_90359503_90361149_90361235_90375743_90375914_90376053_90376108_90377763_90377866_90379001
66043	chr6	+	1376	4	NNC	ENSMUSG00000029761.17	novel	4041	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	102.558384455988	3	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTCTTCCAGATGTCT	1439	False	NA	NA	False	NA	NA	NA	34686558	34752389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_34686633_34718723_34718871_34722553_34722863_34751543
66045	chr7	-	2661	10	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	7041	162	7041	-162	3prime_fragment	FALSE	canonical	3	21	junction_9	9.01849950564579	84	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACAGCAACACTTTACC	NA	False	NA	NA	False	NA	NA	NA	44695264	44677148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44678049_44678182_44678279_44678361_44678509_44680034_44680133_44680424_44680551_44683168_44683657_44684032_44684167_44684302_44684420_44692775_44693213_44695146
66046	chr7	-	1544	10	Antisense	novelGene_ENSMUSG00000030802.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGATGCAGACGTGCTCAGC	5132	False	NA	NA	False	NA	NA	NA	127507720	127503974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_127504350_127504539_127504651_127504918_127504980_127505074_127505160_127505243_127505328_127505517_127505593_127506388_127506518_127506611_127506701_127507089_127507264_127507359
66047	chr10	-	311	1	NIC	ENSMUSG00000097134.3	novel	2229	4	NA	NA	1793	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACCAACCTCTAACTTTA	NA	False	NA	NA	False	NA	NA	NA	66751725	66751414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_66751400_66751700
66048	chr12	+	809	9	FSM	ENSMUSG00000007867.10	ENSMUST00000222821.2	783	9	-26	0	-2	0	multi-exon	FALSE	canonical	3	179	junction_5	10.7637992827812	795	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	86129334	86209233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
66049	chrX	+	797	7	Genic_Genomic	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-10012	-24732	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCTTCCGGGTGGCGCGG	NA	False	NA	NA	False	NA	NA	NA	20817910	20828230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_20818265_20818448_20818510_20825595_20825705_20825973_20826041_20826175_20826259_20827960_20828023_20828169
66050	chr15	-	541	3	Antisense	novelGene_ENSMUSG00000115367.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACGTATCCCTATCCAAA	NA	False	NA	NA	False	NA	NA	NA	40031471	40026040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_40026220_40028593_40028675_40031190
66051	chrM	+	336	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	351	-3	351	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	325	False	NA	NA	False	NA	NA	NA	7363	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7400_7700
66052	chr7	-	1385	7	NNC	ENSMUSG00000007837.12	novel	1295	7	NA	NA	-25	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	13.6798716693136	139	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAATGCAAAAGAACT	NA	False	NA	NA	False	NA	NA	NA	44711155	44703029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44703622_44703942_44704072_44706166_44706309_44709391_44709436_44709628_44709811_44710164_44710317_44711011
66053	chr17	-	1913	9	ISM	ENSMUSG00000062859.16	ENSMUST00000042692.13	1989	10	280	10	216	-4	3prime_fragment	FALSE	canonical	3	28	junction_6	7.37817728168685	55	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACGCAGACGGCCATTCT	NA	False	NA	NA	False	NA	NA	NA	28299281	28285728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895
66054	chr6	-	713	7	FSM	ENSMUSG00000023456.17	ENSMUST00000239432.2	1601	7	259	629	117	38	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	1	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTTTAGTAACTGCTCC	NA	False	NA	NA	False	NA	NA	NA	124791000	124788183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
66056	chr9	-	1208	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	517	0	-13	0	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	106	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGATTGAACCTGTAAA	8927	False	NA	NA	False	NA	NA	NA	44329349	44321455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
66057	chr5	+	973	6	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	20	34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	238.316931836578	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGCAGTGGATTGGACAG	NA	False	NA	NA	False	NA	NA	NA	124254204	124256193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124254354_124254463_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
66059	chr13	-	1972	3	Intergenic	novelGene_1538	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTGCTTTCTGCACTGG	NA	False	NA	NA	False	NA	NA	NA	111780552	111716819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_111716935_111717449_111717506_111778751
66061	chr1	-	320	2	Genic_Genomic	ENSMUSG00000081214.4	novel	333	1	NA	NA	11	51	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	181069874	181069501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_181069737_181069789
66062	chr7	+	1168	1	ISM	ENSMUSG00000040841.6	ENSMUST00000049454.6	3007	3	2572	216	2572	-216	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAACAGACAACAGAGCT	NA	False	NA	NA	False	NA	NA	NA	18831090	18832258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_18831100_18832300
66063	chr15	+	1529	11	FSM	ENSMUSG00000022386.13	ENSMUST00000023019.12	1526	11	-1	-2	-1	0	multi-exon	FALSE	canonical	3	28	junction_4	10.36532681588	106	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGTCTGGGGCTTGCC	NA	False	NA	NA	False	NA	NA	NA	85763519	85781595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
66064	chr4	-	1331	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3612.9610898451	1	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTCTAGTTTTGTCATA	NA	False	NA	NA	False	NA	NA	NA	119151697	119135180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151590
66065	chr7	-	2919	1	NIC	ENSMUSG00000038371.16	novel	1018	8	NA	NA	4278	-3718	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATCCTCCAGAAGCCT	NA	False	NA	NA	False	NA	NA	NA	109947170	109944251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_109944300_109947200
66066	chr6	-	1781	1	Genic_Genomic	ENSMUSG00000015112.16	novel	NA	NA	NA	NA	25368	212	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCTAGAAGCAATGAAGA	NA	False	NA	NA	False	NA	NA	NA	6069835	6068054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_6068100_6069800
66067	chr7	-	1142	9	FSM	ENSMUSG00000036845.13	ENSMUST00000108164.8	1312	9	174	-4	-5	0	multi-exon	FALSE	canonical	3	52	junction_8	74.6976196073208	732	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTCAAGTGCATTTA	4867	False	NA	NA	False	NA	NA	NA	30259089	30254865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257510_30258866
66069	chr17	+	835	6	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	3	-13	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	515.468951538306	13	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGTGACGTGAAAACCT	7385	False	NA	NA	False	NA	NA	NA	36198830	36203545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36198890_36198975_36199124_36199246_36199315_36200089_36200253_36200330_36200493_36203310
66070	chr8	+	931	7	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	-1	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0864912962436	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAACAAGAAA	NA	False	NA	NA	False	NA	NA	NA	85635317	85638039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637369_85637964
66073	chr17	+	1289	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	-191	0	-191	0	multi-exon	FALSE	canonical	3	79	junction_1	9.09945053286186	636	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	1803	False	NA	NA	False	NA	NA	NA	26999848	27011495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
66074	chr6	+	3845	3	ISM	ENSMUSG00000030096.9	ENSMUST00000205663.2	738	6	10189	447	-4501	-447	internal_fragment	FALSE	canonical	3	365	junction_1	19	3	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTTTGGTGTGTAAGG	2682	False	NA	NA	False	NA	NA	NA	91712128	91721563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_91712205_91716857_91716993_91717929
66075	chr4	-	1386	10	NNC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	-4272	120	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	28.0625403846392	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTGAGTCTGCCCCCT	8500	False	NA	NA	False	NA	NA	NA	135206037	135179367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135179884_135182183_135182216_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135205886
66076	chr11	+	930	4	NNC	ENSMUSG00000090266.11	novel	847	4	NA	NA	24	-7	intron_retention	FALSE	non_canonical	0	0	junction_3	58.3799813482517	2	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGGAAACTCAATGGGT	8999	False	NA	NA	False	NA	NA	NA	116734434	116740448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_116734601_116739079_116739185_116739726_116739804_116739866
66077	chr2	-	1568	2	ISM	ENSMUSG00000087455.8	ENSMUST00000137162.8	1635	3	1883	-3	1883	3	3prime_fragment	FALSE	canonical	0	0	junction_1	0	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTACATTTGTGATTGCCC	NA	False	NA	NA	False	NA	NA	NA	59215143	59212842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_59214299_59215031
66079	chr7	+	583	1	Intergenic	novelGene_3020	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTAGAAGGAGTGGTGATG	NA	False	NA	NA	False	NA	NA	NA	109744117	109744700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_109744100_109744700
66080	chr5	-	1293	10	ISM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	43	6018	24	489	5prime_fragment	FALSE	canonical	3	123	junction_9	18.3726850393609	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAACTCTGATATCATGTG	NA	False	NA	NA	False	NA	NA	NA	25113424	25073763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
66081	chr15	+	903	4	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6960	33	4	-33	3prime_fragment	FALSE	canonical	3	123	junction_2	13.3666251038423	276	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGCTCAGGAAAGAGAATAA	NA	False	NA	NA	False	NA	NA	NA	102360761	102363032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102360995_102361179_102361328_102361466_102361604_102362647
66085	chr8	-	1818	3	ISM	ENSMUSG00000031823.15	ENSMUST00000150444.2	831	5	1927	-1308	1927	-205	3prime_fragment	FALSE	canonical	3	86	junction_1	9	47	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACCCTCCTGCAGCCCTC	NA	False	NA	NA	False	NA	NA	NA	120811647	120807833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_120809456_120809968_120810100_120811582
66087	chrX	-	866	3	FSM	ENSMUSG00000051159.17	ENSMUST00000101336.10	1090	3	246	-22	246	-1	multi-exon	FALSE	canonical	3	50	junction_2	78.5	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGCCTGGGTGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	101295212	101290987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101291615_101292168_101292294_101295098
66090	chr15	-	770	4	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	708	junction_3	16.5797734872612	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	NA	False	NA	NA	NA	97065112	97058813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_97059277_97059835_97059964_97064383_97064508_97065057
66093	chr9	-	1800	6	FSM	ENSMUSG00000032172.9	ENSMUST00000215999.2	1895	6	86	9	86	-6	multi-exon	FALSE	canonical	3	29	junction_1	2.92574776766556	54	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACATTTGGTGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	20657559	20578997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20580081_20582995_20583103_20583430_20583651_20583922_20584070_20586869_20587020_20657466
66094	chr16	+	1742	1	Intergenic	novelGene_3613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTTTCTCCTGCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	20271385	20273127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_20271400_20273100
66095	chr2	-	1184	9	FSM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	0	800	0	-800	multi-exon	FALSE	canonical	3	349	junction_7	16.1240309786356	4	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGACCCCCCACCCC	NA	False	NA	NA	False	NA	NA	NA	30871953	30862988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
66097	chr5	-	2076	5	ISM	ENSMUSG00000029650.11	ENSMUST00000031655.4	2434	6	769	24	769	-24	3prime_fragment	FALSE	canonical	1	3	junction_4	0.82915619758885	9	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCCTTGAACAGAAGTACC	NA	False	NA	NA	False	NA	NA	NA	147830856	147815274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_147816025_147816502_147816660_147821006_147821091_147822780_147823652_147830642
66099	chr5	-	2426	1	Intergenic	novelGene_693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAACATTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	33024932	33022506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_33022500_33024900
66100	chr19	-	987	1	Antisense	novelGene_ENSMUSG00000033760.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTGAACTTAGAGCTAG	221	False	NA	NA	False	NA	NA	NA	4811383	4810396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_4810400_4811400
66103	chr7	+	3027	1	Antisense	novelGene_ENSMUSG00000101970.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAACTATTTCACAGA	9377	False	NA	NA	False	NA	NA	NA	73195180	73198207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_73195200_73198200
66104	chr8	-	924	2	FSM	ENSMUSG00000045232.5	ENSMUST00000061923.5	634	2	-21	-269	-21	269	multi-exon	FALSE	canonical	3	87	junction_1	0	213	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCACGCGTGCGTATCAT	2827	False	NA	NA	False	NA	NA	NA	84771650	84769288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84769961_84771398
66105	chr16	-	710	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113905.8	758	5	39	9	39	-4	multi-exon	FALSE	canonical	2	8	junction_4	183.830084589003	39	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTCAACCTTGAGTAGA	NA	False	NA	NA	False	NA	NA	NA	94171835	94165314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171753
66106	chr4	-	699	1	Intergenic	novelGene_1807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTTGCCTCGAGAGTA	NA	False	NA	NA	False	NA	NA	NA	19554853	19554154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_19554200_19554900
66107	chr4	-	2043	2	FSM	ENSMUSG00000039611.3	ENSMUST00000042750.3	2989	2	28	918	28	-918	multi-exon	FALSE	canonical	1	1	junction_1	0	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCTGTGTCAGTTGTC	-5	True	NA	NA	False	NA	NA	NA	49597848	49585423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_49587242_49597623
66108	chr10	+	1831	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	274	22	25	-21	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	1	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACCACCCGCTCAGGCT	7301	False	NA	NA	False	NA	NA	NA	80166060	80172253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
66109	chr13	+	2175	5	FSM	ENSMUSG00000021367.9	ENSMUST00000021796.9	2139	5	-46	10	-46	-10	multi-exon	FALSE	canonical	1	1	junction_4	2.44948974278318	23	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTACTGTACTGACTTGTG	NA	False	NA	NA	False	NA	NA	NA	42454905	42461456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_42455435_42457032_42457202_42458421_42458581_42458730_42458845_42460252
66111	chr3	+	2127	1	Intergenic	novelGene_3096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCCTCTCCTAGGGACT	NA	False	NA	NA	False	NA	NA	NA	34819398	34821525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_34819400_34821500
66112	chr11	+	1607	2	Fusion	ENSMUSG00000065546.3_ENSMUSG00000078706.5	novel	1172	3	NA	NA	-167	178	intron_retention	FALSE	canonical	2	9	junction_1	0	1	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAGAGAGGGAGAGGGAG	8647	False	NA	NA	False	NA	NA	NA	96142302	96156269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_96142640_96154999
66115	chr17	-	2500	3	ISM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	504	13875	-340	2051	5prime_fragment	FALSE	canonical	3	126	junction_2	268	5	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACTACTCTATTCTGACT	NA	False	NA	NA	False	NA	NA	NA	66192289	66169635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_66171728_66174526_66174826_66192180
66116	chr10	-	443	4	NNC	ENSMUSG00000093674.8	novel	582	4	NA	NA	-2	0	intron_retention	FALSE	non_canonical	0	0	junction_1	9329.97781347844	35	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128384983	128383982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128384118_128384179_128384299_128384526_128384550_128384817
66117	chr11	-	948	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	133	-3	-7	3	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	1902	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTCACAGCCCTCCATA	1603	False	NA	NA	False	NA	NA	NA	59082645	59074697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
66118	chr12	+	1404	10	NNC	ENSMUSG00000021033.12	novel	1656	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	163.094458732159	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	NA	False	NA	NA	NA	87194538	87211497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477_87210923_87211127
66121	chr15	+	1093	2	NIC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	2557	-892	intron_retention	FALSE	canonical	3	1278	junction_1	0	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCAGTCTGCTTTATT	5813	False	NA	NA	False	NA	NA	NA	78920254	78921661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78920639_78920952
66123	chr10	-	2694	4	ISM	ENSMUSG00000020312.13	ENSMUST00000020564.7	3243	13	13990	-699	-848	98	3prime_fragment	FALSE	canonical	3	15	junction_3	5.09901951359278	8	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAATAAATCTTAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	79459762	79453786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_79455934_79456887_79457022_79458088_79458400_79459660
66124	chr11	-	2771	14	FSM	ENSMUSG00000001583.14	ENSMUST00000001626.10	2778	14	4	3	4	-3	multi-exon	FALSE	canonical	3	9	junction_11	5.7316726185222	70	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACAAAGACACAGCCTCC	9084	False	NA	NA	False	NA	NA	NA	69749552	69741833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69742542_69742623_69742720_69742800_69743112_69743638_69743719_69743942_69744108_69744406_69744502_69745783_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230_69749336_69749532
66125	chr18	+	1599	1	Intergenic	novelGene_4566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTAAAAGACCCCAAATTC	NA	False	NA	NA	False	NA	NA	NA	75221475	75223074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_75221500_75223100
66126	chr11	+	929	3	NIC	ENSMUSG00000020895.15	novel	367	4	NA	NA	5	1	intron_retention	FALSE	canonical	3	348	junction_2	30	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAGCAAGGCGTATACTA	4764	False	NA	NA	False	NA	NA	NA	68961748	68963851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68962301_68963248_68963346_68963571
66127	chr16	+	773	5	ISM	ENSMUSG00000040785.20	ENSMUST00000231915.2	5833	41	70602	8049	-2923	113	internal_fragment	FALSE	canonical	3	114	junction_3	2.73861278752583	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGCTGATCTGGAATTCA	NA	False	NA	NA	False	NA	NA	NA	94255332	94261049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_94255383_94257569_94257671_94258179_94258271_94258789_94258892_94260620
66128	chr2	+	2965	19	ISM	ENSMUSG00000055632.19	ENSMUST00000113532.9	15646	98	-57	96380	-57	-41456	5prime_fragment	TRUE	canonical	0	0	junction_1	0.314269680527355	3	25	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTGAGTCTTAGATACCA	NA	False	NA	NA	False	NA	NA	NA	31204369	31254370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31204689_31223866_31223938_31225425_31225585_31226518_31226642_31233067_31233240_31234023_31234131_31234480_31234602_31236473_31236738_31239989_31240135_31240530_31240653_31242620_31242894_31243727_31243870_31244177_31244306_31244633_31244748_31246235_31246386_31250892_31251082_31251808_31251905_31252169_31252298_31254228
66129	chr5	+	1437	8	Antisense	novelGene_ENSMUSG00000029209.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAGCCTGAGAACCCGG	NA	False	NA	NA	False	NA	NA	NA	69734308	69749636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_69734780_69735313_69735489_69736844_69737035_69739571_69739636_69742315_69742499_69743806_69743910_69747002_69747169_69749551
66130	chr18	+	2093	7	FSM	ENSMUSG00000024530.9	ENSMUST00000025411.9	1404	7	22	-711	-3	711	multi-exon	FALSE	canonical	3	4	junction_6	3.34995854037363	17	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGCTTTCATTAAACC	NA	False	NA	NA	False	NA	NA	NA	67597957	67613616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67598027_67605926_67606096_67606810_67606901_67609864_67609936_67610033_67610137_67611019_67611132_67612137
66131	chr14	-	1425	2	Antisense	novelGene_ENSMUSG00000046005.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTCAGCTCAGAAAACAAG	NA	False	NA	NA	False	NA	NA	NA	31653674	31651596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_31651667_31652319
66134	chr11	-	715	3	ISM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	9278	-391	8995	391	3prime_fragment	FALSE	canonical	3	638	junction_2	77	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATAACTTCAGTGCAAGA	NA	False	NA	NA	False	NA	NA	NA	51882311	51877102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51877638_51879438_51879528_51882220
66135	chr13	-	928	1	NIC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-10	-4368	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGGAGATAATAAGTCAG	NA	False	NA	NA	False	NA	NA	NA	74498331	74497403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74497400_74498300
66136	chr17	-	2063	15	NNC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	-1550	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	128.230500367462	2	36	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTTAAAAAAAAAAAAGG	6481	False	NA	NA	False	NA	NA	NA	35373785	35368069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372223_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767
66138	chr7	-	1477	1	Intergenic	novelGene_2880	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAATAAAACACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	12147980	12146503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_12146500_12148000
66140	chr7	+	505	4	NIC	ENSMUSG00000037563.16	novel	628	4	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_3	10001.0636878728	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050173	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28050277_28050416_28050519_28051601_28051699_28051918
66141	chr17	+	936	2	ISM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	-5	24	-5	14	intron_retention	FALSE	canonical	3	182	junction_1	0	984	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTGTGCGCTGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	25115468	25116472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_25115534_25115601
66142	chr7	-	1820	14	FSM	ENSMUSG00000001249.15	ENSMUST00000108102.9	1830	14	1	9	1	-1	multi-exon	TRUE	canonical	2	5	junction_11	2.8658363092611	44	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAATGGGTCTCTGCGTCT	9113	False	NA	NA	False	NA	NA	NA	30814714	30798158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30810138_30810199_30814102_30814170_30814560
66144	chrX	-	1819	6	NIC	ENSMUSG00000085556.2	novel	636	6	NA	NA	50	2526	intron_retention	FALSE	canonical	2	7	junction_3	8.5463442476886	28	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTATTGGGATGACT	1184	False	NA	NA	False	NA	NA	NA	134053295	134021100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_134021224_134022418_134023744_134044969_134045069_134050176_134050266_134051692_134051783_134053202
66145	chr2	+	666	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	24	0	24	0	multi-exon	FALSE	canonical	3	373	junction_1	17.5	4000	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	6441	False	NA	NA	False	NA	NA	NA	84657364	84660557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_84657492_84657942_84658058_84660133
66146	chr4	+	1541	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	287	1772	287	572	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	303	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGAACCGAGCACTTGG	-2	True	NA	NA	False	NA	NA	NA	41136029	41191608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
66147	chr12	-	1177	8	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_4	59.7586984531652	51	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	55126900	55092460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
66148	chr16	-	705	2	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	705	junction_1	0	1953	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGCACAATTCACTTTG	NA	False	NA	NA	False	NA	NA	NA	48422124	48420475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48421063_48422006
66149	chr1	+	1930	9	ISM	ENSMUSG00000026519.17	ENSMUST00000161523.8	3258	23	21366	17	5334	-17	3prime_fragment	FALSE	canonical	3	35	junction_5	8.24621125123532	1	77	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGGCTGGTGGTGAGA	NA	False	NA	NA	False	NA	NA	NA	180792965	180802651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
66150	chrX	+	1141	1	ISM	ENSMUSG00000031367.16	ENSMUST00000069041.15	2226	6	23199	310	20815	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAACACTGTGGTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	162715211	162716352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_162715200_162716400
66151	chr4	-	2894	1	Intergenic	novelGene_2176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTATCTCTACCTTTGT	NA	False	NA	NA	False	NA	NA	NA	152668181	152665287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_152665300_152668200
66152	chr9	+	1533	1	Intergenic	novelGene_1045	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCTCAGGCAACCTATC	NA	False	NA	NA	False	NA	NA	NA	54752881	54754414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_54752900_54754400
66154	chr11	+	1767	2	FSM	ENSMUSG00000043419.12	ENSMUST00000129321.2	2081	2	314	0	4	0	multi-exon	FALSE	canonical	3	42	junction_1	0	142	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGAAAGACTGTTATTG	NA	False	NA	NA	False	NA	NA	NA	69231600	69233467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69231885_69231984
66156	chr2	+	1564	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-498	-941	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	51	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGCTTGTACTGTGACAC	7702	False	NA	NA	False	NA	NA	NA	30909332	30912653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
66157	chr18	-	2023	1	Antisense	novelGene_ENSMUSG00000024576.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCGGGCGCTCTCTCCGT	6738	False	NA	NA	False	NA	NA	NA	61690357	61688334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61688300_61690400
66158	chr5	-	1101	4	NIC	ENSMUSG00000029600.11	novel	712	3	NA	NA	1	1	combination_of_known_junctions	TRUE	canonical	2	6	junction_2	29.8923996285938	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCAGTCCTGATACTCT	6335	False	NA	NA	False	NA	NA	NA	120750634	120740167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_120740583_120742274_120742313_120749442_120749795_120750338
66159	chr1	+	360	1	NIC	ENSMUSG00000026031.16	novel	676	2	NA	NA	-2	-235	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCGGTGTGAGTAATCCC	3044	False	NA	NA	False	NA	NA	NA	58752450	58752810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_58752400_58752800
66160	chr1	+	1681	5	FSM	ENSMUSG00000026031.16	ENSMUST00000114309.8	2010	5	307	22	284	-22	multi-exon	FALSE	canonical	0	0	junction_2	1.6393596310755	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACTTCCTGATTCT	3353	False	NA	NA	False	NA	NA	NA	58752759	58772364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58752819_58765464_58765892_58768214_58768321_58770310_58770447_58771411
66161	chr11	-	1839	8	NNC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	127	-6	intron_retention	FALSE	non_canonical	0	0	junction_4	71.4371423429188	1	126	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACACTGGAGTCATTGTG	NA	False	NA	NA	False	NA	NA	NA	69470023	69452590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454609_69454774_69468451_69468555_69469268_69469372_69469495
66165	chr10	+	553	1	Intergenic	novelGene_3410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACAATGCAAGATTTCTT	1962	False	NA	NA	False	NA	NA	NA	21980628	21981181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_21980600_21981200
66166	chr15	+	928	8	NNC	ENSMUSG00000006378.16	novel	2370	9	NA	NA	42	536	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	636.390683496244	1	35	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGCAGATGACATGTTAAA	674	False	NA	NA	False	NA	NA	NA	78915115	78921049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78915310_78918149_78918262_78919159_78919262_78919456_78919546_78919984_78920132_78920219_78920311_78920542_78920639_78920952
66169	chr5	-	2085	1	NIC	ENSMUSG00000004642.14	novel	1027	8	NA	NA	241	1654	mono-exon	FALSE	NA	NA	NA	NA	NA	7	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAGAGTATCCAGACACAC	NA	False	NA	NA	False	NA	NA	NA	33809399	33807314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_33807300_33809400
66170	chr7	-	1337	3	Antisense	novelGene_ENSMUSG00000044881.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACACGCGGAAGAACAGA	NA	False	NA	NA	False	NA	NA	NA	100189569	100186293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100186399_100188277_100188370_100188429
66171	chr10	+	687	7	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	-527	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	614.142943910907	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGATGCTGTCTCGGTTT	NA	False	NA	NA	False	NA	NA	NA	111329237	111332744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111329304_111329410_111329431_111330031_111330155_111330454_111330686_111331185_111331237_111331900_111331967_111332614
66172	chr1	+	1515	7	NNC	ENSMUSG00000026520.9	novel	1580	7	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	416.938044957921	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	59	False	NA	NA	False	NA	NA	NA	180731900	180735653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733935_180734166_180734253_180734354_180734519_180735041
66173	chr19	+	1344	8	NNC	ENSMUSG00000024866.11	novel	1284	8	NA	NA	-80	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	14.0987769045432	182	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATAAAATAGACTGTGCC	NA	False	NA	NA	False	NA	NA	NA	4036489	4039981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4036612_4036822_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038720_4039652
66174	chr7	-	673	8	NNC	ENSMUSG00000053565.11	novel	774	8	NA	NA	67	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1232.78913899519	1	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGCCCTATTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	28681141	28670803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679864_28679968_28681098
66176	chr11	-	892	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	-2	1103	-2	129	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGATCCAAGTGTTTAAC	NA	False	NA	NA	False	NA	NA	NA	115915332	115913889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
66177	chr11	-	1710	1	Intergenic	novelGene_2253	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCTAACTCTCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	34971103	34969393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_34969400_34971100
66178	chr18	+	1440	15	NNC	ENSMUSG00000025429.10	novel	2267	15	NA	NA	69	878	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_14	10.3057839912095	29	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTGTATTCTTGTGT	58	False	NA	NA	False	NA	NA	NA	77882313	77971457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77882451_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77971137
66179	chr16	-	1474	9	FSM	ENSMUSG00000035699.9	ENSMUST00000042042.9	2618	9	112	1032	-64	-13	multi-exon	FALSE	canonical	3	30	junction_3	5.50993421013355	91	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACGCTTGCACAAGACACAC	NA	False	NA	NA	False	NA	NA	NA	32306585	32294353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32297533_32297608_32298467_32298623_32304952_32305048_32306302
66182	chrX	+	693	1	Intergenic	novelGene_3926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCTATTCTCTAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	49718083	49718776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_49718100_49718800
66184	chr16	-	974	4	FSM	ENSMUSG00000022940.18	ENSMUST00000138514.2	695	4	-25	-254	-25	0	multi-exon	FALSE	canonical	3	395	junction_3	26.0298973404728	458	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAACCTTGAGTAGATCTA	NA	False	NA	NA	False	NA	NA	NA	94171393	94165310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947
66185	chr11	-	579	4	ISM	ENSMUSG00000018565.18	ENSMUST00000123701.9	1259	7	9630	4	-1230	0	3prime_fragment	FALSE	canonical	3	523	junction_1	50.374155631192	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAAACCTCTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	69861459	69859057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386
66186	chr12	+	1964	11	FSM	ENSMUSG00000052160.8	ENSMUST00000063888.5	1982	11	10	8	-1	-8	multi-exon	FALSE	canonical	3	9	junction_5	2.92574776766556	35	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGACATGTCTGTCTGTG	4290	False	NA	NA	False	NA	NA	NA	112727098	112735416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_112727218_112728959_112729044_112729830_112729998_112730396_112730581_112730881_112731003_112731431_112731560_112733136_112733338_112733931_112734072_112734187_112734354_112734458_112734556_112734859
66188	chr11	-	1106	1	Intergenic	novelGene_2527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATGTATGGGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	115352813	115351707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_115351700_115352800
66190	chr3	-	243	1	Intergenic	novelGene_3124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAAAGGGAAAATCGAAG	3699	False	NA	NA	False	NA	NA	NA	54807704	54807461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_54807500_54807700
66191	chr16	-	1088	5	NNC	ENSMUSG00000023791.19	novel	670	2	NA	NA	4	-2157	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	165.578531217063	22	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGATTTCACTAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	31918552	31908476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_31908938_31911161_31911304_31914370_31914527_31915817_31915882_31918287
66192	chr6	-	1138	1	Antisense	novelGene_ENSMUSG00000025702.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGACACGTGTTTAAACA	NA	False	NA	NA	False	NA	NA	NA	116385061	116383923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_116383900_116385100
66193	chr4	-	1677	1	NIC	ENSMUSG00000060862.11	novel	7192	19	NA	NA	8415	-1839	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAGGGAATCTCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	136710558	136708881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_136708900_136710600
66195	chr6	+	1027	3	NNC	ENSMUSG00000042505.7	novel	966	3	NA	NA	51	-3319	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	22	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTATGTTGGGTGACCT	36	False	NA	NA	False	NA	NA	NA	6956057	7039660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_6956201_6957003_6957081_7038853
66196	chr2	+	1237	10	Antisense	novelGene_ENSMUSG00000026915.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGAAACAAGAAAAACAACT	NA	False	NA	NA	False	NA	NA	NA	37493964	37537300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_37494023_37514181_37514290_37514497_37514603_37515188_37515302_37516493_37516589_37517445_37517539_37525435_37525587_37530908_37531028_37535481_37535704_37537127
66197	chr10	+	1191	8	NNC	ENSMUSG00000023175.16	novel	1526	8	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2320.27355881911	24	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCCCACCATGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	79540339	79547792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546635_79546678_79546755_79547089_79547115_79547327
66198	chr6	-	1044	9	Antisense	novelGene_ENSMUSG00000040112.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCCGGAGCGGACAAGCAC	NA	False	NA	NA	False	NA	NA	NA	146972276	146944279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_146944399_146947608_146947651_146949635_146949798_146951323_146951385_146957347_146957489_146961638_146961748_146962918_146962990_146966984_146967100_146972052
66199	chr2	-	886	8	ISM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	527	10	297	-10	3prime_fragment	FALSE	canonical	3	328	junction_4	28.7636391782318	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTAAAAACCATGGCTCA	NA	False	NA	NA	False	NA	NA	NA	26806015	26803404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966
66201	chr17	-	682	1	Genic_Genomic	ENSMUSG00000059208.16	novel	NA	NA	NA	NA	-2352	397	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACAACCCCAGCTTTTTT	2722	False	NA	NA	False	NA	NA	NA	33887896	33887214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_33887200_33887900
66202	chr7	+	701	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	-8	1	-8	-1	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	640	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGAAGTGCTTTCTTGTC	NA	False	NA	NA	False	NA	NA	NA	105289646	105291049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
66203	chr11	+	982	9	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	-5	-239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1120.59871692547	2	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATATGTGCCTCCACTT	4531	False	NA	NA	False	NA	NA	NA	106146974	106153707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152570_106153068_106153135_106153229_106153329_106153406_106153512_106153622
66204	chr4	-	945	4	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	19	130	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	524.981481154865	2	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCATAGATAAAAGAGAG	2511	False	NA	NA	False	NA	NA	NA	129229144	129203179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203697_129222380_129222527_129228289_129228438_129229010
66206	chr9	-	1670	1	NIC	ENSMUSG00000032026.8	novel	1077	7	NA	NA	-631	13	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	35	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTAGTGTTAGTAGTGT	1936	False	NA	NA	False	NA	NA	NA	48386442	48384772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_48384800_48386400
66210	chr5	-	1948	1	Intergenic	novelGene_836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGCTGATGGCAACAAT	9647	False	NA	NA	False	NA	NA	NA	115465066	115463118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_115463100_115465100
66211	chr12	+	1263	1	Intergenic	novelGene_4436	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATAAGGGTAGAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	86549673	86550936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_86549700_86550900
66213	chr8	-	465	1	Intergenic	novelGene_1638	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCCCCAGGTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	46657015	46656550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_46656600_46657000
66214	chr2	+	1698	13	FSM	ENSMUSG00000039050.9	ENSMUST00000142376.2	1688	13	-27	17	-27	-17	multi-exon	TRUE	canonical	3	166	junction_6	20.4306074853936	7	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGGAGTGTCTGCTTAGC	NA	False	NA	NA	False	NA	NA	NA	179761169	179801068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821
66215	chr7	+	821	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	59.6547357717726	260	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	NA	False	NA	NA	NA	130972888	130989568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130989346
66216	chr8	+	1427	13	NNC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	0	-59	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	172.600373374129	1	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTCCGAGTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	85415911	85424831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423478_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813
66217	chr4	-	1542	6	NIC	ENSMUSG00000028772.20	novel	286	3	NA	NA	-5	1035	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	100.550484832247	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTGACATTATTGATT	NA	False	NA	NA	False	NA	NA	NA	130253714	130229613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_130230738_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
66218	chr10	+	2377	20	NIC	ENSMUSG00000019971.11	novel	8211	54	NA	NA	45	2953	combination_of_known_junctions	FALSE	canonical	3	23	junction_17	4.20525986430277	13	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAAATTTTATTAAATAT	NA	False	NA	NA	False	NA	NA	NA	100323464	100351160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_100323615_100324140_100324271_100324423_100324502_100325181_100325252_100326008_100326056_100328509_100328654_100330762_100330817_100331684_100331838_100332550_100332734_100333801_100333892_100334923_100335047_100336008_100336133_100336964_100337138_100344525_100344689_100346348_100346450_100346523_100346612_100348148_100348262_100349781_100349867_100350319_100350463_100350995
66219	chr1	-	805	6	NNC	ENSMUSG00000062963.11	novel	914	6	NA	NA	169	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	245.361284639611	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGTAGCCTGTGGTTC	7536	False	NA	NA	False	NA	NA	NA	171122344	171116144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171116545_171116743_171116835_171117090_171117135_171117456_171117521_171117721_171117790_171122206
66220	chr5	-	1541	6	Antisense	novelGene_ENSMUSG00000053856.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTATGGAAACTGCGCTT	NA	False	NA	NA	False	NA	NA	NA	31269868	31265684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_31265761_31266225_31266345_31266836_31267051_31267519_31267662_31268454_31268523_31268946
66221	chr8	-	594	2	Genic_Genomic	ENSMUSG00000110469.2	novel	1250	1	NA	NA	416	11	multi-exon	FALSE	canonical	0	0	junction_1	0	4	35	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	76132801	76131956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_76132314_76132564
66222	chr10	-	566	5	NIC	ENSMUSG00000062981.6	novel	666	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1569.09087929922	4	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGTGTATTTCATTA	NA	False	NA	NA	False	NA	NA	NA	95337789	95316666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_95316840_95326107_95326275_95332685_95332750_95336244_95336385_95337767
66223	chr17	-	691	7	NNC	ENSMUSG00000061613.14	novel	1046	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3011.98893313593	18	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	NA	False	NA	NA	NA	31877753	31866054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31866176_31866997_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31873952_31874041_31877626
66224	chr17	-	957	1	Antisense	novelGene_ENSMUSG00000032796.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTGGCAGCTACCACCT	NA	False	NA	NA	False	NA	NA	NA	68088886	68087929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_68087900_68088900
66226	chr10	+	805	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	-16	0	12	0	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	595	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCTTCTAGAACCTTC	NA	False	NA	NA	False	NA	NA	NA	60925121	60930103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
66227	chr6	-	880	5	NIC	ENSMUSG00000063884.7	novel	2680	17	NA	NA	-10	-191	intron_retention	FALSE	canonical	3	978	junction_4	32.2286751201473	1	32	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGCTGAGCCTCATATAC	3038	False	NA	NA	False	NA	NA	NA	71885744	71879861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
66228	chr6	-	373	1	NIC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	2180	1768	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAAACTTGATCTTT	2895	False	NA	NA	False	NA	NA	NA	71878275	71877902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71877900_71878300
66229	chr17	+	1228	5	NIC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	-28	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	381.49795215702	2	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGGTTTGCACACATGAA	NA	False	NA	NA	False	NA	NA	NA	48717079	48724283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_48717401_48717855_48717933_48718291_48718437_48722248_48722362_48723711
66230	chr10	+	779	5	NNC	ENSMUSG00000025408.16	novel	890	4	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	340.624701834732	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTCTCACTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	127126665	127132155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591_127131889_127131974
66231	chr14	+	1195	5	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	65	-179	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	785.799393929519	1	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTGTCTTCCTTTATA	1751	False	NA	NA	False	NA	NA	NA	26359293	26377777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374292_26377152
66233	chr7	-	1305	5	Antisense	novelGene_ENSMUSG00000030663.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCCCTTCACCGCTACAG	NA	False	NA	NA	False	NA	NA	NA	115704311	115692576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_115692761_115698674_115698757_115701176_115701236_115702441_115702562_115703451
66234	chr4	-	1033	6	ISM	ENSMUSG00000006216.11	ENSMUST00000105788.2	2490	19	7675	9	-2982	-9	3prime_fragment	FALSE	canonical	3	53	junction_5	26.0199923136038	262	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCCATTAGTGTCCCC	4153	False	NA	NA	False	NA	NA	NA	141135650	141131672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135616
66235	chr16	+	1730	7	NNC	ENSMUSG00000004069.18	novel	2505	11	NA	NA	10345	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	298.763935053896	1	103	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTGTGGTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	4512323	4525553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_4512381_4514252_4514396_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
66238	chrX	-	2642	1	Intergenic	novelGene_4005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	81	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTCTCCATCTTCCACCA	NA	False	NA	NA	False	NA	NA	NA	104915226	104912584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_104912600_104915200
66239	chr12	-	492	2	Genic_Genomic	ENSMUSG00000043483.5	novel	636	1	NA	NA	11	104	multi-exon	FALSE	canonical	0	0	junction_1	0	39	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGTGGCTTCTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	96889821	96889092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_96889397_96889633
66240	chr9	+	1704	4	Antisense	novelGene_ENSMUSG00000098294.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	644	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCTGAGCGAGTCAGGAA	1186	False	NA	NA	False	NA	NA	NA	72680447	72686393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_72681693_72683328_72683535_72684046_72684190_72686283
66241	chr5	+	1109	1	ISM	ENSMUSG00000033209.18	ENSMUST00000040111.10	10780	24	408409	459	52897	-459	mono-exon	FALSE	NA	NA	NA	NA	NA	9	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCCCCCTTTAAAAAAGAA	6835	False	NA	NA	False	NA	NA	NA	111436077	111437186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_111436100_111437200
66243	chr18	+	837	2	ISM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	-1	1	-1	-1	intron_retention	FALSE	canonical	3	377	junction_1	0	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACACGTGTATGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	33927943	33929038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_33928178_33928435
66244	chr4	+	3131	25	NNC	ENSMUSG00000028862.7	novel	1062	7	NA	NA	746	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7.0611171212493	13	83	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTGTCTTGGCAACTT	9195	False	NA	NA	False	NA	NA	NA	132968874	132980238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132968966_132970128_132970269_132970363_132970388_132970621_132970813_132970985_132971035_132972841_132972988_132973088_132973202_132973568_132973729_132973940_132974104_132974185_132974294_132974390_132974441_132974512_132974609_132974724_132974813_132974891_132975026_132975323_132975452_132975698_132975860_132977511_132977658_132977959_132978117_132978234_132978412_132978652_132978759_132978921_132979085_132979169_132979283_132979365_132979440_132979710_132979788_132979962
66245	chr17	-	1752	7	FSM	ENSMUSG00000044857.9	ENSMUST00000236082.2	2808	7	1051	5	1051	-5	multi-exon	FALSE	canonical	3	449	junction_5	60.6840634397167	132	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGATGTGGTTTTATTTGT	8112	False	NA	NA	False	NA	NA	NA	27418394	27408578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27409765_27411905_27412009_27412076_27412179_27412811_27412958_27414298_27414379_27415109_27415187_27418336
66246	chr9	+	414	6	NNC	ENSMUSG00000009927.10	novel	1280	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5001.66505875793	4	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGGGTGCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	44318992	44321489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44319055_44319284_44319381_44319982_44320012_44320085_44320167_44321250_44321350_44321442
66248	chr3	-	1164	8	NNC	ENSMUSG00000028029.12	novel	1126	7	NA	NA	3	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	468.598039314058	2	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGTTTATCACTTACAT	NA	False	NA	NA	False	NA	NA	NA	132389594	132366285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_132366503_132373145_132373315_132377739_132377951_132379725_132379891_132380509_132380624_132382765_132382900_132383016_132383130_132389553
66249	chr19	-	787	4	NIC	ENSMUSG00000079478.10	novel	699	4	NA	NA	-12	1	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	217.355827056823	1779	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTGTTCTTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	5781739	5780333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5780741_5781161_5781354_5781471_5781624_5781703
66250	chr16	+	1270	6	ISM	ENSMUSG00000022868.7	ENSMUST00000232556.2	1336	7	1841	0	-511	0	3prime_fragment	FALSE	canonical	3	93	junction_1	9.66643677887566	307	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTTCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	22712997	22718193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22713186_22713544_22713630_22713943_22714108_22715257_22715360_22716877_22716962_22717546
66251	chr2	-	1714	1	Intergenic	novelGene_2791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCTACATGGCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	168776108	168774394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_168774400_168776100
66253	chr9	-	1370	12	NNC	ENSMUSG00000032557.14	novel	2404	12	NA	NA	-22	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	135.021394080731	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAAAACTTAGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	103940284	103924736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933074_103934103_103934183_103937416_103937507_103937592_103937639_103939990
66255	chr13	-	491	5	FSM	ENSMUSG00000021557.16	ENSMUST00000167096.8	508	5	-5	22	-5	-14	multi-exon	FALSE	canonical	2	7	junction_4	4.06201920231798	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAAATTTGGGAAATGA	1061	False	NA	NA	False	NA	NA	NA	59705119	59679740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
66258	chr4	+	219	1	Intergenic	novelGene_1950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGGACAGCCAGGGCTA	1507	False	NA	NA	False	NA	NA	NA	126118663	126118882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_126118700_126118900
66259	chr7	+	1209	6	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5532	-4	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	8.73155198117723	55	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAAAGGTTGGCTCCTT	794	False	NA	NA	False	NA	NA	NA	24471098	24484073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24471221_24473674_24473740_24474864_24474981_24477550_24477911_24480294_24480655_24483887
66260	chr4	+	828	6	NNC	ENSMUSG00000028797.21	novel	1519	5	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	275.641361192402	53	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGCTTAGCAAATGTTT	3197	False	NA	NA	False	NA	NA	NA	129494493	129502316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248_129501308_129501999
66261	chr5	+	469	4	NNC	ENSMUSG00000040274.12	novel	425	2	NA	NA	-62609	-2859	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCCACGGACTCACGTGG	NA	False	NA	NA	False	NA	NA	NA	3328875	3391578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_3328984_3364585_3364785_3380205_3380283_3391493
66262	chr8	+	1064	1	Intergenic	novelGene_1717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTCAGTCCCTGCTCAC	NA	False	NA	NA	False	NA	NA	NA	105927055	105928119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_105927100_105928100
66263	chr1	-	2412	1	ISM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	101857	10	8076	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	13	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTTACAGCTGTCTGC	NA	False	NA	-68	True	NA	NA	NA	36181529	36179117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_36179100_36181500
66265	chr16	+	1014	4	Antisense	novelGene_ENSMUSG00000022706.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGTCTGGGATTCCGAGA	NA	False	NA	NA	False	NA	NA	NA	18690798	18695376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_18691415_18692288_18692449_18694075_18694161_18695223
66266	chr19	-	755	5	FSM	ENSMUSG00000050623.6	ENSMUST00000057716.6	784	5	22	7	1	0	multi-exon	FALSE	canonical	3	36	junction_4	4.76969600708473	209	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAGTCAGTGCGTGGC	7412	False	NA	NA	False	NA	NA	NA	6902726	6899797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902475_6902659
66267	chr1	-	866	6	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	9805	3241	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1117.60805294164	2	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTTGATACTTGTAATC	NA	False	NA	NA	False	NA	NA	NA	13720965	13696977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697290_13697575_13697662_13700288_13700426_13708450_13708634_13717608_13717736_13720944
66268	chrX	+	804	7	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	-26	-434	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	878.525737939545	1	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTATGAATGTTACTGT	NA	False	NA	NA	False	NA	NA	NA	52076987	52110102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52108957_52109029_52109199_52109277_52109943
66269	chr9	-	1669	12	FSM	ENSMUSG00000032101.7	ENSMUST00000034612.7	6934	12	65	5200	65	-5200	multi-exon	FALSE	canonical	3	22	junction_11	3.32533475603125	43	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTGAGGGCTCTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	35469759	35453142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35453356_35454893_35455083_35457109_35457273_35458076_35458315_35462580_35462759_35464132_35464248_35465602_35465706_35465812_35465906_35468061_35468198_35468677_35468726_35468980_35469048_35469633
66271	chr10	+	907	1	ISM	ENSMUSG00000020189.16	ENSMUST00000105275.9	7204	24	130942	649	47626	-649	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTATGAAGTATTTCGAA	NA	False	NA	NA	False	NA	NA	NA	111131554	111132461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_111131600_111132500
66272	chr10	+	416	1	ISM	ENSMUSG00000020189.16	ENSMUST00000105275.9	7204	24	132070	12	48754	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	22	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGAGCAATCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	111132682	111133098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_111132700_111133100
66273	chr3	+	590	5	NIC	ENSMUSG00000042747.13	novel	582	5	NA	NA	6	-2	combination_of_known_splicesites	FALSE	canonical	3	225	junction_1	697.396945791993	710	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCTGTGTCTGTGAACTG	7597	False	NA	NA	False	NA	NA	NA	89153746	89157027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89153901_89154084_89154240_89154371_89154436_89156380_89156448_89156877
66274	chr9	+	1644	12	NNC	ENSMUSG00000032076.21	novel	4482	10	NA	NA	99273	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	127.768579538771	21	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACTCTGCTGTTTGACAC	319	False	NA	NA	False	NA	NA	NA	47540943	47761883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_47541004_47545223_47545375_47699268_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070_47725244_47730031_47730116_47740674_47740708_47759464_47759597_47761569
66275	chr9	+	1364	7	ISM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	13	7485	13	-3225	5prime_fragment	FALSE	canonical	3	211	junction_6	65.4032364132948	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGACTCGTCTCGGACTG	9227	False	NA	NA	False	NA	NA	NA	63509954	63544385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665
66277	chr11	+	1193	7	NNC	ENSMUSG00000056938.17	novel	961	8	NA	NA	11	-7	intron_retention	FALSE	non_canonical	3	16	junction_6	51.4716750585536	38	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAACCTCAGTCTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	102993912	103003016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102993972_102994060_102994196_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995359_103002437
66278	chr3	-	679	4	ISM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	9848	14	740	-14	3prime_fragment	FALSE	canonical	3	862	junction_3	52.7825728815866	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTACATATAAAATATGTC	NA	False	NA	-58	True	NA	NA	NA	132379797	132366273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725
66279	chr3	+	2030	1	ISM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	40766	3678	40766	-3678	mono-exon	FALSE	NA	NA	NA	NA	NA	1	81	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCAGTGATGGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	63924292	63926322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_63924300_63926300
66280	chr11	+	1798	13	ISM	ENSMUSG00000020357.4	ENSMUST00000020617.3	6255	30	26990	1381	26990	-1381	3prime_fragment	TRUE	canonical	0	0	junction_1	2.22984802670994	2	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACTCTGGCAGAGAATTC	NA	False	NA	NA	False	NA	NA	NA	49527079	49542185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_49527158_49527485_49527600_49527809_49527899_49528028_49528180_49528612_49528708_49529088_49529212_49531008_49531121_49533047_49533148_49534261_49534368_49535110_49535260_49536717_49536839_49538773_49538860_49541711
66281	chr11	+	922	5	NIC	ENSMUSG00000018858.16	novel	2596	6	NA	NA	0	3	intron_retention	FALSE	canonical	3	944	junction_3	65.7053080047571	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGGAGCCTGTTTCCAG	NA	False	NA	NA	False	NA	NA	NA	115294577	115301737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115301228_115301463
66282	chr8	+	2594	4	ISM	ENSMUSG00000031790.9	ENSMUST00000034243.7	5135	10	17866	787	263	-787	3prime_fragment	FALSE	canonical	3	35	junction_1	4.24264068711928	40	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTCTACAGGGGCAG	NA	False	NA	NA	False	NA	NA	NA	96096761	96100921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_96096900_96097323_96097475_96097633_96097750_96098732
66283	chr2	+	1605	3	FSM	ENSMUSG00000042821.8	ENSMUST00000052631.8	1621	3	7	9	7	-9	multi-exon	FALSE	canonical	2	7	junction_2	2	46	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTAAAAAGTGCTCAGTGT	4762	False	NA	NA	False	NA	NA	NA	167380121	167384725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167380292_167380590_167381119_167383818
66284	chr15	+	1633	5	Intergenic	novelGene_3303	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	10.2316909648406	15	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTTAAAAAATTTATTT	NA	False	NA	NA	False	NA	NA	NA	73547468	73560337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_73547681_73549310_73549460_73551082_73551193_73559121_73559861_73559914
66286	chr13	-	890	5	Antisense	novelGene_ENSMUSG00000052293.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGCCCCGACGCGCTTGC	NA	False	NA	NA	False	NA	NA	NA	100802861	100787887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_100787952_100790696_100790790_100800400_100800460_100800556_100800704_100802334
66287	chr8	+	2045	14	FSM	ENSMUSG00000033192.6	ENSMUST00000046290.3	2811	14	-10	776	-10	-320	multi-exon	TRUE	canonical	2	3	junction_10	2.47591952914324	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACTGGTCAGCAATTAAT	NA	False	NA	NA	False	NA	NA	NA	93581956	93645131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_93582254_93591528_93591669_93596275_93596494_93597765_93597879_93599675_93599737_93600860_93600920_93602182_93602218_93606027_93606083_93613193_93613277_93615900_93616027_93617300_93617455_93635814_93635914_93640870_93641007_93644662
66289	chr6	-	2742	1	NIC	ENSMUSG00000045962.17	novel	10575	28	NA	NA	1625	856	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	83	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCCTCCCTCTTATGATT	295	False	NA	NA	False	NA	NA	NA	119948400	119945658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_119945700_119948400
66290	chr2	-	1401	11	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	43.1723291009415	242	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATTTGATCCAAAAGCT	8851	False	NA	NA	False	NA	NA	NA	93841099	93810978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
66292	chr2	-	982	5	FSM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	27	8	27	-5	multi-exon	FALSE	canonical	3	55	junction_4	121.847240428333	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGTAGCTGACCTTTAA	8194	False	NA	NA	False	NA	NA	NA	164646774	164634692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
66293	chr17	-	922	7	NNC	ENSMUSG00000024436.17	novel	1079	7	NA	NA	9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	689.668036086928	22	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGACTCCCTTTGGGC	4317	False	NA	NA	False	NA	NA	NA	36227260	36221273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36221580_36221647_36221849_36222310_36222371_36223229_36223297_36225353_36225482_36225587_36225697_36227209
66295	chr12	+	2551	13	FSM	ENSMUSG00000051890.14	ENSMUST00000063445.13	2620	13	61	8	-21	-8	multi-exon	FALSE	canonical	1	2	junction_6	3.37474278855276	18	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTAAACTTTTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	69288666	69331398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_69288788_69297526_69297598_69298144_69298263_69298701_69298821_69300465_69300545_69302948_69303033_69304796_69304881_69305342_69305402_69306274_69306388_69309922_69309996_69315015_69315101_69316599_69316653_69329906
66296	chr10	-	1468	1	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	2617	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGCCACACCCGTCTTC	3107	False	NA	NA	False	NA	NA	NA	127027718	127026250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127026200_127027700
66297	chr11	+	1484	1	FSM	ENSMUSG00000078851.5	ENSMUST00000108817.5	2146	1	0	662	0	-662	mono-exon	FALSE	NA	NA	NA	NA	NA	145	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACGTCTTAAAGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	58845510	58846994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58845500_58847000
66298	chr13	-	1935	5	ISM	ENSMUSG00000006191.18	ENSMUST00000129231.2	694	6	410	-1030	176	1030	3prime_fragment	FALSE	canonical	3	9	junction_1	98.2811655405042	13	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAAAATTGTGTATAGA	NA	False	NA	NA	False	NA	NA	NA	30039238	30019947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_30021054_30022497_30022686_30030210_30030324_30033921_30034092_30038880
66299	chr12	+	2855	2	ISM	ENSMUSG00000021258.11	ENSMUST00000101055.5	2627	11	16619	1212	-2728	1	intron_retention	FALSE	canonical	3	55	junction_1	0	6	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGTCCAGATTCCCCCT	NA	False	NA	NA	False	NA	NA	NA	108162615	108168406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_108162632_108165567
66300	chr3	+	1801	10	NNC	ENSMUSG00000025762.17	novel	1505	9	NA	NA	-9	-11	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	27.7328525599353	33	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATTTTTCCTTTATGCT	NA	False	NA	NA	False	NA	NA	NA	40905217	40932206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_40905390_40916042_40916102_40916603_40916664_40918402_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
66302	chrX	-	1864	2	Antisense	novelGene_ENSMUSG00000041718.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	19	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAGTGTAAGCTAAATAA	NA	False	NA	NA	False	NA	NA	NA	143100906	143095811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_143095862_143099092
66303	chr1	-	697	3	FSM	ENSMUSG00000067299.12	ENSMUST00000045028.15	613	3	-54	-30	-54	30	multi-exon	FALSE	canonical	3	39	junction_1	4.5	522	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATTTGCTTCTGTTTTTT	7566	False	NA	NA	False	NA	NA	NA	65102665	65101000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65101342_65102217_65102461_65102552
66304	chr17	-	643	4	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4596.41606761906	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45884191	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879039_45882481_45882546_45882690_45882838_45884092
66309	chr8	+	1534	1	Intergenic	novelGene_1762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTCTAGAGGAGGACAC	9404	False	NA	NA	False	NA	NA	NA	117388800	117390334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_117388800_117390300
66310	chr2	-	1525	1	Intergenic	novelGene_2733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGGTGTGTGTCACTAT	NA	False	NA	NA	False	NA	NA	NA	151852858	151851333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_151851300_151852900
66311	chr8	-	2351	1	Intergenic	novelGene_1649	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTTCGAGACAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	57953596	57951245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_57951200_57953600
66312	chr13	-	1682	4	NNC	ENSMUSG00000055341.11	novel	2117	4	NA	NA	-1568	764	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0.471404520791032	4	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCCTTCATTACTTTCT	7761	False	NA	NA	False	NA	NA	NA	67443853	67439749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67439814_67440686_67441698_67441780_67442345_67443810
66313	chr6	+	1524	8	FSM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	18	4	-9	-4	multi-exon	FALSE	canonical	3	88	junction_1	17.1583263538524	232	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTGCAGTGTGTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	72332447	72336741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
66314	chr2	+	1611	2	Intergenic	novelGene_2692	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	160	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTAGAGTCTGGGGTGT	5775	False	NA	NA	False	NA	NA	NA	119680853	119686235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_119680961_119684731
66315	chr2	+	1162	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	-2	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	280	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2209	False	NA	NA	False	NA	NA	NA	126912584	126939004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
66317	chr10	-	223	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176010.8	582	4	191	168	-2	-161	multi-exon	FALSE	canonical	3	7075	junction_3	6241.33064516071	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGAACGTCACCTCGCC	NA	False	NA	NA	False	NA	NA	NA	128384983	128384150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956
66318	chr10	+	1378	1	Intergenic	novelGene_3467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTCAGTCCCAAATGCA	NA	False	NA	NA	False	NA	NA	NA	70683921	70685299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_70683900_70685300
66320	chr6	-	2626	1	ISM	ENSMUSG00000034832.16	ENSMUST00000089622.11	10904	11	74574	2103	74531	-2103	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATGTCAAAGCAAGGCC	NA	False	NA	NA	False	NA	NA	NA	83344083	83341457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83341500_83344100
66321	chr13	-	1119	5	FSM	ENSMUSG00000021384.15	ENSMUST00000058196.13	1418	5	160	139	20	0	multi-exon	FALSE	canonical	2	5	junction_4	5.02493781056044	73	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAGCCACCTTATCATC	NA	False	NA	NA	False	NA	NA	NA	49401610	49384304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_49384808_49390899_49391089_49392264_49392413_49393958_49394148_49401520
66322	chr6	+	1404	3	Antisense	novelGene_ENSMUSG00000108094.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	1.5	20	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAGTGCTGGAATTAAAGA	NA	False	NA	NA	False	NA	NA	NA	143054195	143061948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_143054237_143056864_143056934_143060654
66323	chr6	+	354	1	Intergenic	novelGene_4267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATTAAAGGTGTGCACTC	NA	False	NA	NA	False	NA	NA	NA	143061957	143062311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_143062000_143062300
66325	chr4	-	755	5	Antisense	novelGene_ENSMUSG00000058006.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATGCGGCATGGACAAAA	NA	False	NA	NA	False	NA	NA	NA	32712140	32707612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_32707638_32708402_32708599_32709355_32709565_32710259_32710383_32711938
66327	chr9	-	867	4	FSM	ENSMUSG00000040883.19	ENSMUST00000046831.11	785	4	-82	0	-9	0	multi-exon	FALSE	canonical	3	136	junction_3	45.9879211194514	1034	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCCATGGTCATTTTTT	NA	False	NA	NA	False	NA	NA	NA	21838840	21832304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838587
66328	chr16	-	1231	12	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	-1	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	718.664452328987	1	73	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAAATTAATGTGCAAAC	9194	False	NA	NA	False	NA	NA	NA	91525497	91486536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489486_91489570_91491054_91491185_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505720_91505762_91511588_91511715_91514291_91514364_91525445
66329	chr17	+	1309	8	ISM	ENSMUSG00000045394.10	ENSMUST00000234623.2	1745	9	3212	225	3212	-202	3prime_fragment	FALSE	canonical	3	196	junction_3	16.6427038619551	59	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTAAGTTTGTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	87947321	87958332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_87947432_87947715_87947957_87948861_87948928_87949529_87949594_87950969_87951072_87953564_87953769_87957041_87957087_87957855
66331	chr17	-	482	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	74	2093	-15	-113	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTAAAGGCCACTACACAGA	NA	False	NA	NA	False	NA	NA	NA	36149124	36146905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
66332	chr6	+	769	1	NIC	ENSMUSG00000079511.9	novel	3628	12	NA	NA	7554	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	25	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7514	False	NA	NA	False	NA	NA	NA	83086151	83086920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83086200_83086900
66333	chr16	-	1230	5	FSM	ENSMUSG00000022760.18	ENSMUST00000232114.2	1120	5	-21	-89	3	-19	multi-exon	FALSE	canonical	2	7	junction_3	44.5329933869261	299	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGATGCTAGAAAGAGAC	7189	False	NA	NA	False	NA	NA	NA	17348997	17345960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348541_17348722_17348888
66334	chr6	-	1217	1	Intergenic	novelGene_4179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCTCCCCTGATTGCAGC	3988	False	NA	NA	False	NA	NA	NA	65775787	65774570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_65774600_65775800
66338	chr4	+	519	4	NNC	ENSMUSG00000028936.16	novel	474	4	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2735.08902962957	2	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGTGGTTTATCCTTGCATC	NA	False	NA	NA	False	NA	NA	NA	152410321	152416938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152410350_152411934_152412043_152414460_152414586_152416680
66339	chr4	-	1117	10	NNC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	44	-1087	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	190.685572748231	1	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCCATCTGTGATAGA	2	True	NA	NA	False	NA	NA	NA	58987075	58966525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58966764_58968758_58968878_58970990_58971113_58973600_58973691_58975860_58975979_58978013_58978189_58981826_58981882_58982879_58982926_58984743_58984860_58987037
66340	chr17	+	2850	1	Antisense	novelGene_ENSMUSG00000024248.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGGCTTCCCCTTAGGC	7989	False	NA	NA	False	NA	NA	NA	83818908	83821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_83818900_83821800
66342	chr9	-	1398	1	Antisense	novelGene_ENSMUSG00000111417.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCGAGGAAGGGGCGTTC	NA	False	NA	NA	False	NA	NA	NA	78429412	78428014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_78428000_78429400
66343	chr13	-	1767	9	NNC	ENSMUSG00000021592.19	novel	3657	8	NA	NA	-10	-2027	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	11.3247516529061	24	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAGCGTAGGGCAAAATT	9823	False	NA	NA	False	NA	NA	NA	76246732	76210567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_76210722_76213398_76213624_76214753_76214979_76215068_76215253_76220218_76220391_76222893_76223171_76239776_76239937_76242006_76242137_76246492
66344	chrX	+	1510	3	Genic_Genomic	ENSMUSG00000096072.2	novel	1035	1	NA	NA	-1357	354	multi-exon	FALSE	canonical	2	3	junction_1	0.5	26	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCAGTTCATCCCTGTCAC	NA	False	NA	NA	False	NA	NA	NA	90522374	90525120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_90522413_90523542_90523599_90523704
66345	chr11	+	2169	1	Intergenic	novelGene_2520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTACAGTGGGTCAGAATA	NA	False	NA	NA	False	NA	NA	NA	110411660	110413829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_110411700_110413800
66346	chr11	-	2400	1	ISM	ENSMUSG00000049755.15	ENSMUST00000064786.12	2765	3	5816	17	2424	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGGCTCGTGGTTTCA	6431	False	NA	NA	False	NA	NA	NA	58208356	58205956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_58206000_58208400
66350	chr15	-	1734	9	Antisense	novelGene_ENSMUSG00000000530.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGGTCTCCTCCTACCA	5902	False	NA	NA	False	NA	NA	NA	101041522	101032501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101032624_101033177_101033424_101033628_101033841_101034007_101034108_101034863_101035010_101035242_101035517_101036082_101036286_101038946_101039078_101041222
66351	chr5	+	765	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1161	-5	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	919.504588079907	204	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTGGTGATTGTT	NA	False	NA	NA	False	NA	NA	NA	115603159	115612776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115603279_115604230_115604380_115608840_115609001_115610051_115610180_115612567
66353	chr17	-	922	10	NNC	ENSMUSG00000095687.3	novel	1793	9	NA	NA	80	-523	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	333.963441482617	583	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATGTGTTTGGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	8366537	8347430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_8347719_8349056_8349132_8349468_8349513_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
66354	chr6	+	1227	11	NNC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	95.9064127157303	327	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9499	False	NA	NA	False	NA	NA	NA	83772204	83779538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83772265_83773888_83773974_83774158_83774258_83774762_83774826_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
66355	chr10	-	1061	9	NNC	ENSMUSG00000036009.17	novel	2033	12	NA	NA	41269	8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	59.6196276405682	11	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGTGTTTTCATTCTCA	NA	False	NA	NA	False	NA	NA	NA	105635803	105599107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105617862_105618159_105629200_105629275_105630222_105630253_105633085_105633181_105635693
66357	chr16	+	2025	1	Intergenic	novelGene_3647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTCCTCGCTTGGGTTTT	2788	False	NA	NA	False	NA	NA	NA	35931472	35933497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_35931500_35933500
66358	chr11	+	1112	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17708.5	2	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443864_62443917
66359	chr11	-	300	3	Antisense	novelGene_ENSMUSG00000017221.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCAGGGTGGCTGTCCGGAG	419	False	NA	NA	False	NA	NA	NA	98586804	98581324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_98581477_98581738_98581826_98586743
66360	chr4	-	2127	8	NNC	ENSMUSG00000078719.3	novel	743	3	NA	NA	917	4272	intron_retention	TRUE	non_canonical	0	0	junction_1	0	4	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGACTTCCTTTGTCAC	812	False	NA	NA	False	NA	NA	NA	43583577	43578943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_43579004_43579373_43580022_43580293_43580377_43580473_43580624_43580860_43581011_43581187_43581313_43581483_43581676_43582858
66362	chr6	-	1147	11	NNC	ENSMUSG00000030032.15	novel	1216	11	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	12.5574678976297	4	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9912	False	NA	NA	False	NA	NA	NA	83133349	83129690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83129840_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
66363	SIRV6	+	508	5	NNC	SIRV6A	novel	454	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6234.13114936637	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCAGTCAAGTCGTAG	NA	False	NA	NA	False	NA	NA	NA	1302	2540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1382_1468_1530_1618_1736_1845_2027_2470
66364	chr1	-	2393	7	FSM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	84	10	36	-10	multi-exon	FALSE	canonical	3	24	junction_2	6.36832439151427	23	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAACTAATGCACTTTCT	NA	False	NA	NA	False	NA	NA	NA	33946813	33891142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_33892449_33901734_33901855_33902822_33903016_33903603_33903825_33917340_33917519_33922521_33922730_33946646
66365	chrX	-	1128	10	NNC	ENSMUSG00000031387.15	novel	1318	11	NA	NA	264	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	910.462777457597	1	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCGAAATAAAGATGACCCT	NA	False	NA	NA	False	NA	NA	NA	72974083	72965754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965829_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972945_72973286_72973460_72973610_72973687_72973834_72973869_72974013
66366	chr9	+	1616	8	FSM	ENSMUSG00000070284.11	ENSMUST00000137284.8	1853	8	23	214	-13	0	multi-exon	FALSE	canonical	3	100	junction_6	10.1196918562428	137	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	NA	False	NA	NA	NA	107926510	107928901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928442_107928524
66367	chr4	+	584	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	-13	65	-13	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTGGCATCCGAGCAAAA	7	True	NA	NA	False	NA	NA	NA	10848406	10848990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_10848400_10849000
66368	chr4	+	1006	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-16	1	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	39.282806530197	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTATGCTGCTGGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	133809644	133819808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_133809759_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
66369	chr7	-	2122	8	ISM	ENSMUSG00000051403.10	ENSMUST00000058444.10	3816	13	28380	2	-1714	-2	3prime_fragment	FALSE	canonical	3	79	junction_4	22.0759357395221	25	19	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCAGTGCCTCTGTTTCCT	4112	False	NA	NA	False	NA	NA	NA	19268621	19264726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19265352_19265431_19265519_19265708_19266451_19266571_19266739_19266842_19266985_19267888_19268002_19268295_19268452_19268531
66370	chr16	+	1114	1	ISM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	119305	3109	99696	2611	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCGCCTGTGCTCACTCT	NA	False	NA	NA	False	NA	NA	NA	33320510	33321624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_33320500_33321600
66371	chr8	+	2830	6	ISM	ENSMUSG00000031596.16	ENSMUST00000098816.10	3677	12	-2	10734	-2	8340	5prime_fragment	FALSE	canonical	1	1	junction_4	3.286335345031	6	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCATGAAGCACCATGCT	NA	False	NA	NA	False	NA	NA	NA	41315430	41360359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_41315595_41351973_41352366_41353092_41353249_41355535_41355702_41357482_41357617_41358541
66372	chr10	+	3165	1	Intergenic	novelGene_3510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGCCAGAGGACTCGTGT	9450	False	NA	NA	False	NA	NA	NA	95127343	95130508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_95127300_95130500
66373	chr9	-	1070	4	FSM	ENSMUSG00000041012.5	ENSMUST00000047013.4	1064	4	-4	-2	0	2	multi-exon	FALSE	canonical	2	4	junction_3	0.816496580927726	41	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGTGTGGAGTTTGTAAA	NA	False	NA	NA	False	NA	NA	NA	114673224	114618410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114618814_114619705_114619823_114625108_114625283_114672848
66374	chr1	+	1356	8	ISM	ENSMUSG00000026596.14	ENSMUST00000027888.13	3549	12	70802	1508	13928	-1508	3prime_fragment	FALSE	canonical	1	1	junction_7	3.85449644663773	1	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGAAATATGAACTCACG	2131	False	NA	NA	False	NA	NA	NA	156457420	156468778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_156457696_156458914_156459000_156460649_156460828_156461322_156461508_156462634_156462788_156464387_156464478_156468008_156468183_156468562
66375	chr1	+	2208	1	ISM	ENSMUSG00000026596.14	ENSMUST00000166172.9	10151	13	82584	5790	25648	1062	mono-exon	FALSE	NA	NA	NA	NA	NA	4	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGACCATCCCTAAGCC	233	False	NA	NA	False	NA	NA	NA	156469140	156471348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_156469100_156471300
66376	chr2	-	259	3	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-74	180	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824695	28823441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28823491_28823563_28823730_28824651
66377	chr4	-	2554	9	NIC	ENSMUSG00000028438.17	novel	5593	13	NA	NA	18	308	combination_of_known_junctions	TRUE	canonical	3	20	junction_7	10.4215821735474	9	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGGGATGCTTTATTTT	-15	True	NA	NA	False	NA	NA	NA	41464869	41402992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41403896_41404676_41404799_41409731_41409820_41413828_41414045_41414901_41415000_41423451_41423636_41428344_41428983_41429266_41429412_41464709
66378	chr4	+	1462	5	FSM	ENSMUSG00000055963.13	ENSMUST00000143186.8	888	5	32	-606	12	409	multi-exon	FALSE	canonical	3	8	junction_2	1.6393596310755	41	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCACATGTTACTTTTAT	9	True	NA	NA	False	NA	NA	NA	12906869	12981479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_12906939_12917915_12918066_12962941_12963024_12974729_12974816_12980404
66379	chr5	+	1112	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	3	0	3	0	multi-exon	FALSE	canonical	3	127	junction_1	0	416	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGAGGTGGGGTTTGT	2223	False	NA	NA	False	NA	NA	NA	124621199	124629187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124621310_124628185
66380	chr5	+	1243	1	Intergenic	novelGene_788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTTCTCTTCTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	104991700	104992943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104991700_104992900
66381	chr14	+	1222	8	NNC	ENSMUSG00000021737.5	novel	1387	8	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	608.048031131806	1	66	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGTTTAATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8348828	8357577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8349025_8349570_8349781_8352796_8352939_8353250_8353380_8353506_8353616_8355471_8355641_8357171_8357238_8357376
66382	chr5	-	1484	1	Antisense	novelGene_ENSMUSG00000002748.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGGCCCCATGGGGAAC	NA	False	NA	NA	False	NA	NA	NA	135274971	135273487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_135273500_135275000
66383	chr9	-	1086	1	Genic_Genomic	ENSMUSG00000047193.17	novel	NA	NA	NA	NA	-21	-33907	mono-exon	FALSE	NA	NA	NA	NA	NA	62	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGAGGGTGCTGAGTTC	12	True	NA	NA	False	NA	NA	NA	7184467	7183381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_7183400_7184500
66384	chrX	+	1063	2	ISM	ENSMUSG00000096508.8	ENSMUST00000179953.2	3519	5	24	8561	24	-8561	5prime_fragment	FALSE	canonical	3	249	junction_1	0	2	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTGAAAACACTGCATG	NA	False	NA	NA	False	NA	NA	NA	134334607	134335868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_134334711_134334908
66385	chr8	-	676	3	ISM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	234	2984	234	-2984	5prime_fragment	FALSE	canonical	3	354	junction_2	15	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAACCATAAAAATAGTTT	9020	False	NA	NA	False	NA	NA	NA	34613953	34605709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_34606195_34607914_34607991_34613838
66386	chr7	-	2473	1	Intergenic	novelGene_3051	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGCAAGATGGTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	140460710	140458237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_140458200_140460700
66387	chr13	+	3250	1	Antisense	novelGene_ENSMUSG00000021621.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACAATATATGAATAGCCC	NA	False	NA	NA	False	NA	NA	NA	91945323	91948573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_91945300_91948600
66388	chr15	+	1033	1	ISM	ENSMUSG00000049687.6	ENSMUST00000161178.2	2931	2	2249	1604	1928	866	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTACCAGGTTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	82227307	82228340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_82227300_82228300
66390	chr5	+	628	4	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6847.88830386581	1	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121342616_121343468_121343711_121346453_121346639_121346844
66391	chr10	-	987	2	NNC	ENSMUSG00000112331.2	novel	1718	4	NA	NA	-378	-12433	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	3	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCCTTCATCAGCCAAC	NA	False	NA	NA	False	NA	NA	NA	68870096	68869002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_68869882_68869988
66392	chr3	-	910	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6411250864577	177	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTCTCATGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	75563049	75554754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75555246_75556106_75556298_75562696_75562869_75562993
66393	chr11	-	954	1	Antisense	novelGene_ENSMUSG00000020818.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGCACGCCTTTAATCCC	NA	False	NA	NA	False	NA	NA	NA	116749978	116749024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_116749000_116750000
66394	chr1	+	1469	4	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-11	9683	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.657891697365	63	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAGCTTCGAGTGACAA	NA	False	NA	NA	False	NA	NA	NA	88387393	88402963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_88387678_88397558_88397777_88398642_88398830_88402183
66395	chr17	+	2041	4	Fusion	ENSMUSG00000060417.7_ENSMUSG00000090211.4	novel	2463	3	NA	NA	11	745	multi-exon	FALSE	non_canonical	0	0	junction_1	5.65685424949238	25	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGTGAAAGATGACCTC	NA	False	NA	NA	False	NA	NA	NA	13721226	13739276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_13721318_13722473_13722565_13736990_13738577_13739003
66396	chrX	-	1464	8	NIC	ENSMUSG00000085556.2	novel	636	6	NA	NA	60	2526	combination_of_known_splicesites	FALSE	canonical	3	6	junction_4	7.74069553379661	52	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTATTGGGATGACT	1194	False	NA	NA	False	NA	NA	NA	134053285	134021100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_134021224_134022418_134023001_134023443_134023744_134044969_134045069_134048327_134048426_134050176_134050266_134051692_134051783_134053202
66400	chr7	+	1239	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	155	7	-48	-4	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	141	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCAATATTCTTGCTTGA	2866	False	NA	NA	False	NA	NA	NA	6998453	7006083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
66401	chr11	-	932	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	-170	16	-170	-14	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	32	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATTCTCTCAACATG	NA	False	NA	38	True	NA	NA	NA	70128910	70126047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
66402	chr7	+	2128	12	NNC	ENSMUSG00000003437.15	novel	2003	14	NA	NA	15	2	intron_retention	FALSE	canonical	0	0	junction_8	58.3506074383956	1	70	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTCCTAAAGTCTCTGT	595	False	NA	NA	False	NA	NA	NA	28092401	28098810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095298_28095376_28095483_28095558_28095813_28096034_28096150_28096245_28096375_28097872_28097979_28098083_28098175_28098250
66403	chr1	+	2690	1	ISM	ENSMUSG00000026311.17	ENSMUST00000027538.9	5826	5	15535	651	15169	-651	mono-exon	FALSE	NA	NA	NA	NA	NA	7	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGCTTTATTGCCCTC	947	False	NA	NA	False	NA	NA	NA	91483970	91486660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_91484000_91486700
66404	chr18	+	1088	7	Antisense	novelGene_ENSMUSG00000052026.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCCCCCACGGCTCCCG	5782	False	NA	NA	False	NA	NA	NA	61136825	61147162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_61136972_61137459_61137593_61138780_61138925_61140448_61140686_61140789_61140919_61142492_61142678_61147048
66405	chr15	+	518	4	ISM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	28	1397	-10	190	5prime_fragment	FALSE	canonical	3	4463	junction_3	131.659493475489	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTGTCTGACTATTTT	NA	False	NA	NA	False	NA	NA	NA	76227750	76229063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011
66406	chr16	-	1087	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	-209	80	76	-80	multi-exon	FALSE	canonical	3	993	junction_1	34.2746261832277	96	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGTTTTTGTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	31094019	31076872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
66407	chr4	+	1125	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	252	95	-72	-95	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	5220	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAAGTGTCTGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	155789508	155818241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
66408	chr3	+	1254	10	NNC	ENSMUSG00000036503.14	novel	1062	9	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	57.8608377333916	17	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTAATAGTCTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	57643484	57740645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_57643622_57655311_57655456_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384
66409	chr16	-	1540	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	-303	3	-303	-3	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	347	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTCCAGAGTATAACTTT	NA	False	NA	NA	False	NA	NA	NA	45545274	45531595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
66410	chr2	-	722	4	NNC	ENSMUSG00000026895.8	novel	861	4	NA	NA	82	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	625.596959356066	4	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	False	NA	NA	False	NA	NA	NA	35939336	35926337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_35926654_35929723_35929901_35934429_35934526_35939203
66411	chr8	-	1655	9	FSM	ENSMUSG00000015994.11	ENSMUST00000016138.11	1930	9	31	244	31	154	multi-exon	FALSE	canonical	3	814	junction_5	99.1573875210516	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATAGTGTTTGATGTTT	NA	False	NA	NA	False	NA	NA	NA	26505647	26488993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408
66412	chr9	-	506	1	Antisense	novelGene_ENSMUSG00000032115.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGTAGGTGTCACAGGA	2023	False	NA	NA	False	NA	NA	NA	44303618	44303112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_44303100_44303600
66413	chr4	-	1627	1	Intergenic	novelGene_1993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCAGGTCAGCTTGTTGAC	4011	False	NA	NA	False	NA	NA	NA	138620000	138618373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_138618400_138620000
66414	chr10	-	1632	8	ISM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	6389	4493	6316	90	3prime_fragment	FALSE	canonical	2	12	junction_1	7.01892485516471	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCCCTGCTGCCAGCCA	NA	False	NA	NA	False	NA	NA	NA	81256632	81236512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100
66415	chr12	+	608	1	Intergenic	novelGene_4468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAACTCCAGATGCCCTGG	144	False	NA	NA	False	NA	NA	NA	109544578	109545186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_109544600_109545200
66416	chr11	+	2159	3	FSM	ENSMUSG00000010142.13	ENSMUST00000137832.8	764	3	36	-1431	-2	-8	multi-exon	FALSE	canonical	1	2	junction_1	4.5	27	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGCATACAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	61033322	61040190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_61033356_61037666_61037844_61038241
66417	chr7	-	1633	3	FSM	ENSMUSG00000009248.7	ENSMUST00000009392.6	1605	3	-25	-3	-25	3	multi-exon	FALSE	canonical	3	20	junction_1	4	63	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCAGTGCCTTGTACCT	NA	False	NA	NA	False	NA	NA	NA	142523026	142520562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_142521077_142521636_142522437_142522707
66418	chr7	+	1787	4	ISM	ENSMUSG00000032743.16	ENSMUST00000205462.2	4185	15	42390	6	6786	-6	3prime_fragment	FALSE	canonical	3	17	junction_1	5.71547606649408	23	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAATAGAGTGTGGTACA	NA	False	NA	NA	False	NA	NA	NA	125471228	125473959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_125471425_125471858_125472020_125472103_125472193_125472618
66419	chr15	-	1864	16	NNC	ENSMUSG00000009733.10	novel	3302	16	NA	NA	8	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.9537617638599	1	49	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTTTTATAGAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	100449881	100400692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100400884_100402196_100402325_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100420269_100420377_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
66420	chr8	+	1117	7	NNC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	486.497687558739	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	NA	False	NA	NA	NA	86026561	86034699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_86026622_86028251_86028354_86029424_86029589_86029990_86030081_86031837_86031955_86032848_86032948_86034214
66423	chr9	-	1806	6	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	-357	-7	intron_retention	FALSE	canonical	3	8	junction_5	95.3297435221558	17	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACAACCTGTGTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	21715654	21711482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21711696_21712466_21713165_21713648_21713886_21714109_21714200_21714288_21714420_21715217
66424	chr13	-	2129	2	NNC	ENSMUSG00000035248.10	novel	619	2	NA	NA	11	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	40	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGATATGTGTGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	59970917	59967936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59969938_59970789
66425	chr12	-	1082	1	Antisense	novelGene_ENSMUSG00000097391.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCCTCTTGTCTACTGTCC	NA	False	NA	NA	False	NA	NA	NA	109697696	109696614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_109696600_109697700
66426	chr12	-	846	1	Intergenic	novelGene_4471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCAGCCATGCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	109691700	109690854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_109690900_109691700
66427	chr10	+	1218	6	FSM	ENSMUSG00000044475.15	ENSMUST00000219778.2	1230	6	34	-22	0	22	multi-exon	FALSE	canonical	2	9	junction_5	94.044670237074	34	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGCTCTTTCCTTA	NA	False	NA	NA	False	NA	NA	NA	59838660	59862183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59861544
66428	chr5	-	607	1	FSM	ENSMUSG00000083833.5	ENSMUST00000118829.2	483	1	-15	-109	-15	109	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGATCTGTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115940233	115939626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115939600_115940200
66429	chr9	-	2010	2	FSM	ENSMUSG00000043987.19	ENSMUST00000214971.2	553	2	-352	-1105	-352	-5	multi-exon	FALSE	canonical	3	79	junction_1	0	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAATTTTCTATGAGGC	NA	False	NA	NA	False	NA	NA	NA	45680427	45678260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_45679662_45679818
66431	chrX	-	2477	1	Intergenic	novelGene_4105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAGAACAAGCCCTCTG	NA	False	NA	NA	False	NA	NA	NA	163786139	163783662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_163783700_163786100
66432	chr2	+	1009	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-35275	-5	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	71.1910106684826	29	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAAGGCTCTGTGTTCTGC	4425	False	NA	NA	False	NA	NA	NA	29351247	29414800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29351513_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
66433	chr18	+	788	6	FSM	ENSMUSG00000024516.14	ENSMUST00000025394.14	860	6	48	24	-8	0	multi-exon	FALSE	canonical	3	349	junction_3	14.5244621242922	838	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGCTTCCTTTTGTGGCC	NA	False	NA	NA	False	NA	NA	NA	65933633	65950731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_65933783_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
66434	chr11	-	1617	2	Antisense	novelGene_ENSMUSG00000072640.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGATCTTAACTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	78737678	78735831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78736431_78736660
66435	chr5	+	911	3	NNC	ENSMUSG00000037905.14	novel	6473	3	NA	NA	79	403	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	217	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGTTAAAATTGGCTTGT	NA	False	NA	NA	False	NA	NA	NA	125518710	125532193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_125518801_125518877_125518939_125531433
66437	chr8	-	561	2	Genic_Genomic	ENSMUSG00000052825.7	novel	992	1	NA	NA	-109	290	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAATATTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	52650200	52648809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_52649207_52650036
66438	chr4	+	1680	4	ISM	ENSMUSG00000028801.15	ENSMUST00000063707.3	2380	9	29350	99	29350	-99	3prime_fragment	FALSE	canonical	3	11	junction_1	4.02768199119819	75	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGTTCTTTGTGATCTT	NA	False	NA	NA	False	NA	NA	NA	135252647	135265015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_135252843_135256802_135256969_135260949_135261141_135263887
66439	chr3	-	1442	2	FSM	ENSMUSG00000068860.6	ENSMUST00000090815.6	1959	2	511	6	511	-6	multi-exon	FALSE	canonical	3	31	junction_1	0	83	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCATTTTCCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	95148398	95144236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95144541_95147260
66440	chr15	-	817	5	NIC	ENSMUSG00000005354.17	novel	1298	4	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	503.602211571792	160	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	2728	False	NA	NA	False	NA	NA	NA	77813193	77799246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_77799437_77799904_77800058_77808742_77808867_77811891_77812155_77813106
66442	chr10	+	1087	9	FSM	ENSMUSG00000020059.10	ENSMUST00000020252.10	1139	9	53	-1	-42	0	multi-exon	FALSE	canonical	3	104	junction_4	7.47391296443837	419	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	NA	False	NA	NA	NA	88295483	88309098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
66443	chr5	+	2942	1	NIC	ENSMUSG00000066964.3	novel	1827	5	NA	NA	3611	-5802	mono-exon	FALSE	NA	NA	NA	NA	NA	6	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTAACCCTAACCCTAAC	NA	False	NA	NA	False	NA	NA	NA	113378385	113381327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_113378400_113381300
66445	chr17	-	495	5	NNC	ENSMUSG00000008668.16	novel	715	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9338.29794448646	16	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	34174637	34170972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34171093_34171194_34171287_34171427_34171566_34174051_34174151_34174591
66447	chr15	-	1054	5	NIC	ENSMUSG00000003355.8	novel	734	6	NA	NA	19	-6	intron_retention	FALSE	canonical	3	632	junction_3	34.4456092992997	42	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACAAGACGTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	98626060	98622256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98622484_98624364_98624815_98625091_98625180_98625563_98625630_98625837
66448	chr14	+	1147	8	NNC	ENSMUSG00000022110.14	novel	435	2	NA	NA	7034	-132	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	572.614982660554	264	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGGTCTCTTTTCTTGCA	NA	False	NA	NA	False	NA	NA	NA	73813127	73833091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_73813214_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
66449	chr8	+	1082	7	NNC	ENSMUSG00000003808.19	novel	1826	13	NA	NA	8	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	308.250304136103	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGGACTCTGTTGTCATT	NA	False	NA	NA	False	NA	NA	NA	85583656	85595879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85583815_85594011_85594091_85594177_85594278_85594378_85594548_85594637_85594714_85594852_85594968_85595494
66450	chr9	+	1481	4	Antisense	novelGene_ENSMUSG00000032366.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTTCAAGGTCTGATCC	NA	False	NA	NA	False	NA	NA	NA	66929910	66939767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_66930726_66938312_66938383_66938735_66938799_66939234
66451	chr10	-	2048	15	FSM	ENSMUSG00000035673.11	ENSMUST00000217876.2	2156	15	56	52	17	-52	multi-exon	FALSE	canonical	3	19	junction_14	37.9085903785645	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCAAGGTCAGGGCTATG	5711	False	NA	NA	False	NA	NA	NA	79911217	79898301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
66452	chr13	+	1049	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	72.3972375163583	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTAGTGTTCCTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	34221614	34258055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_34221753_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
66453	chrX	-	2789	1	Intergenic	novelGene_4097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTGGCCCCAAAGCTTG	NA	False	NA	NA	False	NA	NA	NA	153706675	153703886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_153703900_153706700
66454	chr9	+	1017	5	FSM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	0	2	0	-2	multi-exon	FALSE	canonical	3	266	junction_2	16.8430252627015	525	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGGGTTTGGTTTCA	3544	False	NA	NA	False	NA	NA	NA	98868425	98884072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019_98881070_98883607
66455	chr4	-	1976	2	ISM	ENSMUSG00000025329.4	ENSMUST00000026378.4	3754	16	28542	7	28542	-7	3prime_fragment	FALSE	canonical	0	0	junction_1	0	10	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTCTTTAACTGGCTGC	NA	False	NA	NA	False	NA	NA	NA	140544547	140540300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_140542166_140544436
66456	chr1	+	636	6	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	2911	5151	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	252.379555431893	1	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATACCAGTGGCCTCTCT	8714	False	NA	NA	False	NA	NA	NA	34482032	34493588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34482075_34482458_34482606_34482790_34483005_34483077_34483173_34483276_34483351_34493524
66459	chr11	+	1503	1	Intergenic	novelGene_2234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGCTGGTAATGACTCATG	NA	False	NA	NA	False	NA	NA	NA	20439195	20440698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_20439200_20440700
66460	chr4	-	793	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	-257	11	-257	-10	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	8386	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAAACTTGCTCTTTGTC	7400	False	NA	NA	False	NA	NA	NA	115932525	115924172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
66461	chr9	-	176	1	NIC	ENSMUSG00000060461.6	novel	619	3	NA	NA	18	-932	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTACTCTTGACCT	NA	False	NA	NA	False	NA	NA	NA	78275441	78275265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_78275300_78275400
66462	chr8	-	514	1	Intergenic	novelGene_1583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTTGGGAGCCTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	19829236	19828722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_19828700_19829200
66463	chr18	+	1423	9	FSM	ENSMUSG00000024610.16	ENSMUST00000097563.9	1410	9	-14	1	-14	-1	multi-exon	FALSE	canonical	1	2	junction_6	11.7020297384685	45	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAACACTCTTGCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	60936905	60945717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944365_60944558_60944930_60944994_60945223
66464	chr15	-	536	1	ISM	ENSMUSG00000048755.10	ENSMUST00000061882.10	1917	4	8391	12	5543	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	39	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAGCTGCCAGCTGGCTC	1321	False	NA	NA	False	NA	NA	NA	83431545	83431009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_83431000_83431500
66465	chr13	+	841	4	NNC	ENSMUSG00000038683.17	novel	1155	3	NA	NA	-17	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	306.531491947492	20	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATACAGAGCTTAATTA	NA	False	NA	NA	False	NA	NA	NA	41154481	41166484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_41154890_41158212_41158376_41161491_41161572_41166294
66466	chr16	-	3204	1	NIC	ENSMUSG00000022890.14	novel	742	6	NA	NA	-25	-285	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	29	45	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCAAGGGTAACATGACT	NA	False	NA	NA	False	NA	NA	NA	84631745	84628541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_84628500_84631700
66469	chr2	+	2009	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	193	47	0	-47	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	461	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTTTCCCCTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	78699583	78751590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
66470	chr15	+	783	6	Antisense	novelGene_ENSMUSG00000019146.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_5	2.68328157299975	1	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAAGGTAATTGTGTGGG	3860	False	NA	NA	False	NA	NA	NA	77885848	77983562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_77885969_77896575_77896681_77928329_77928410_77931221_77931384_77939716_77939923_77983452
66472	chrM	+	539	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	-538	1143	-538	-1143	mono-exon	FALSE	NA	NA	NA	NA	NA	37	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	120	False	NA	29	True	NA	NA	NA	13606	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_13600_14100
66473	chr10	+	972	2	NNC	ENSMUSG00000036478.9	novel	5001	2	NA	NA	3	950	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	235	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTAATCAATCTCTTG	NA	False	NA	NA	False	NA	NA	NA	96452870	96455480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_96453025_96454662
66474	chr11	+	940	8	FSM	ENSMUSG00000006058.11	ENSMUST00000006217.10	1004	8	49	15	-17	-15	multi-exon	FALSE	canonical	3	665	junction_5	23.859281341282	836	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATTCCAAGTTATTTTT	3246	False	NA	NA	False	NA	NA	NA	95925759	95938241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95937105_95937181_95938020
66475	chr17	+	1125	5	FSM	ENSMUSG00000037649.11	ENSMUST00000236322.2	1108	5	-34	17	-34	5	multi-exon	FALSE	canonical	3	37	junction_1	3.83242742918897	112	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGACCTCTCCCTCCACG	6764	False	NA	NA	False	NA	NA	NA	34354567	34358057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34354733_34356087_34356373_34356876_34357156_34357380_34357510_34357790
66476	chr14	+	1620	1	ISM	ENSMUSG00000097545.8	ENSMUST00000180610.8	4103	4	4278	13	2634	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	8	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTCTTTCAAGACCCAT	NA	False	NA	NA	False	NA	NA	NA	64829777	64831397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_64829800_64831400
66477	chr10	+	648	3	NNC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1218	102	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	4434	False	NA	NA	False	NA	NA	NA	79978137	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79978441_79979665_79979710_79981346
66479	chr1	+	2460	2	NNC	ENSMUSG00000026113.18	novel	1243	10	NA	NA	30550	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	6	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCTCACTTGAT	NA	False	NA	NA	False	NA	NA	NA	37447302	37449813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37448614_37448664
66480	chr13	-	1477	11	NNC	ENSMUSG00000021461.18	novel	2006	14	NA	NA	0	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	45.2226713054415	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTACCTCACCCGGGGG	NA	False	NA	NA	False	NA	NA	NA	63579536	63478338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545999_63547779_63547950_63548047_63548133_63550655_63550853_63579263
66481	chr19	+	473	1	ISM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	3106	1168	2996	4	mono-exon	FALSE	NA	NA	NA	NA	NA	27	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTTTGGGTTTGGGATT	NA	False	NA	NA	False	NA	NA	NA	5543588	5544061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5543600_5544100
66482	chr1	+	1361	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	233	3998	229	237	multi-exon	TRUE	canonical	3	134	junction_7	98.5478232605254	121	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCATGCTTTGAAATTTA	NA	False	NA	NA	False	NA	NA	NA	155434100	155563078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
66486	chr14	-	647	5	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	6	-577	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1207.40889925493	2	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGTAAAAGGCTTGTTT	1694	False	NA	NA	False	NA	NA	NA	19873886	19861995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19862181_19867128_19867216_19869974_19870075_19872633_19872759_19873736
66487	chr11	-	997	8	NIC	ENSMUSG00000075528.14	novel	1516	12	NA	NA	3047	-10	combination_of_known_junctions	FALSE	canonical	2	10	junction_7	217.983523062021	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTCAAACATGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	101302358	101297674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302051_101302119
66489	chr1	-	1219	11	NIC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	-8	-7	combination_of_known_splicesites	FALSE	canonical	3	23	junction_10	148.435305773256	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTAGTTATTTGAGTG	NA	False	NA	NA	False	NA	NA	NA	91326430	91303560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91326372
66490	chr18	+	1826	6	Antisense	novelGene_ENSMUSG00002075705.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3.31058907144937	15	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATCTGTATCATAGAAG	NA	False	NA	NA	False	NA	NA	NA	3765077	3830014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_3765180_3768676_3768754_3778096_3778174_3827478_3827560_3828318_3828359_3828565
66492	chrX	+	1075	6	NNC	ENSMUSG00000001127.13	novel	826	8	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	39	junction_5	135.718237536449	70	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATCTTTGTCCTTCATTGT	6289	False	NA	NA	False	NA	NA	NA	20714797	20719142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20718052_20718168_20718268_20718834
66493	chr2	+	1418	3	NNC	ENSMUSG00000045464.6	novel	2040	2	NA	NA	584	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17	1	20	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCCTAAGTTATAATTAT	NA	False	NA	NA	False	NA	NA	NA	94237079	94242032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_94237312_94240803_94241091_94241133
66494	chr3	+	1696	1	Antisense	novelGene_ENSMUSG00000000563.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAATACCTTTTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	105863633	105865329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_105863600_105865300
66495	chr3	+	818	2	Antisense	novelGene_ENSMUSG00000000563.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCGAGCCTGTCAGGGGC	NA	False	NA	NA	False	NA	NA	NA	105865481	105866548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_105866215_105866463
66496	chr8	-	1452	5	NNC	ENSMUSG00000034416.19	novel	1716	8	NA	NA	7100	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	11.9791485507109	38	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATTGTGGCATGTTCT	4523	False	NA	NA	False	NA	NA	NA	117743734	117736066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743275
66497	chr1	-	2759	4	NIC	ENSMUSG00000043467.20	novel	2929	6	NA	NA	-1	-14	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1.88561808316413	15	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATGTTATAACACATCT	NA	False	NA	NA	False	NA	NA	NA	160861855	160836383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_160837062_160847053_160847977_160859374_160860335_160861657
66499	chr4	-	901	1	ISM	ENSMUSG00000078515.5	ENSMUST00000102484.5	9553	10	44965	5	44965	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGACTTGTTTGATCTGCT	NA	False	NA	NA	False	NA	NA	NA	141405765	141404864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141404900_141405800
66500	chrX	+	1113	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	-232	-98	-155	98	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	1784	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	NA	False	NA	NA	NA	37689299	37702401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
66501	chr6	-	1058	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	49	0	-13	0	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	749	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	83483902	83457198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
66502	chr5	+	2172	16	NNC	ENSMUSG00000029613.16	novel	4325	15	NA	NA	7	-1544	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	55.4715542718368	21	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATGGTACTTTATTGGA	NA	False	NA	NA	False	NA	NA	NA	143803549	143839525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602_143838673_143839274
66503	chr9	-	2502	16	NNC	ENSMUSG00000049493.14	novel	3704	16	NA	NA	58	-1110	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	22.8385638777923	1	102	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACGAGAACTAACTCTTG	NA	False	NA	NA	False	NA	NA	NA	95727281	95635804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_95636491_95636713_95636839_95643365_95643490_95643986_95644121_95647743_95647839_95651146_95651212_95655570_95655767_95657360_95657457_95658518_95658662_95658741_95658908_95664422_95664505_95666152_95666286_95667542_95667673_95668985_95669150_95677814_95677920_95727223
66504	chr9	+	930	1	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	-974	-1213	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCCAGCCCTCAAACCT	NA	False	NA	NA	False	NA	NA	NA	109895677	109896607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109895700_109896600
66505	chr9	-	774	1	NIC	ENSMUSG00000010651.5	novel	1689	12	NA	NA	1247	-20	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGTTGCAGTCATTTCA	NA	False	NA	NA	False	NA	NA	NA	118977884	118977110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_118977100_118977900
66506	chr1	+	625	9	NNC	ENSMUSG00000053332.14	novel	557	11	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_6	1882.11702196622	8	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160862743	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864427_160865059_160865118_160865564_160865608_160865794
66508	chr15	+	610	1	Intergenic	novelGene_3327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAAAACAAAAACAAAAC	1549	False	NA	NA	False	NA	NA	NA	79848576	79849186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_79848600_79849200
66509	chr18	+	1327	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	54	1143	54	-1143	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATTTACCAAGAGTTCT	NA	False	NA	NA	False	NA	NA	NA	67338490	67339817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67338500_67339800
66510	chr10	+	1113	2	Antisense	novelGene_ENSMUSG00000112725.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCTTTCAGAAAAAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	95280616	95296585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_95281620_95296475
66511	chr1	-	1962	2	NNC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	-14	-182692	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	5	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTGAGTTGCATAATTG	1495	False	NA	NA	False	NA	NA	NA	118981083	118978463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_118980374_118981031
66513	chr7	+	774	1	Antisense	novelGene_ENSMUSG00000101609.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATTTTCTTTTCCTTTC	2399	False	NA	NA	False	NA	NA	NA	142792911	142793685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_142792900_142793700
66514	chr7	+	1272	1	Antisense	novelGene_ENSMUSG00000101609.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGATGCATGCATGTG	3583	False	NA	NA	False	NA	NA	NA	142794095	142795367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_142794100_142795400
66515	chr5	-	1444	7	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	5	junction_6	120.44558476295	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5954	False	NA	NA	False	NA	NA	NA	143314326	143302243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143312061_143314145
66516	chr8	-	1188	1	Intergenic	novelGene_1782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAAGGGCCCCCCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	123758437	123757249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_123757200_123758400
66517	chr4	-	168	1	Intergenic	novelGene_1795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAAATATTTA	NA	False	NA	NA	False	NA	NA	NA	11046163	11045995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_11046000_11046200
66518	chr16	+	2922	1	ISM	ENSMUSG00000053414.9	ENSMUST00000065856.8	5393	11	110519	100	34635	-100	mono-exon	FALSE	NA	NA	NA	NA	NA	1	169	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCATACGATTTGGTCAT	8828	False	NA	NA	False	NA	NA	NA	90293419	90296341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_90293400_90296300
66519	chr7	+	439	5	NNC	ENSMUSG00000074199.8	novel	470	6	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.0926036220835	565	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCTGAATCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	30487330	30490510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30487460_30489128_30489180_30489336_30489382_30489992_30490041_30490344
66520	chr8	-	1569	1	Antisense	novelGene_ENSMUSG00000031818.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3819	79	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGACAAAAAAAAACCCTT	NA	False	NA	NA	False	NA	NA	NA	121397613	121396044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_121396000_121397600
66522	chr19	+	411	3	ISM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	6649	3200	6387	-3200	internal_fragment	FALSE	canonical	3	120	junction_1	5	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTCTGGAAACAGAGGGGT	1177	False	NA	NA	False	NA	NA	NA	8804022	8808307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8804177_8807113_8807315_8808251
66524	chr11	-	1520	1	Antisense	novelGene_ENSMUSG00000045671.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGACTAACAAGAGATCAACA	NA	False	NA	NA	False	NA	NA	NA	19968056	19966536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_19966500_19968100
66525	chr16	-	703	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	-70	85	9	0	multi-exon	FALSE	canonical	3	971	junction_1	40.7982842776507	2433	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTGTCTTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	35891955	35864215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
66527	chr4	+	1315	1	NIC	ENSMUSG00000028641.17	novel	3188	15	NA	NA	372	-1348	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTGTATCAAGGAGCCC	NA	False	NA	NA	False	NA	NA	NA	119102588	119103903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_119102600_119103900
66528	chr15	-	695	1	ISM	ENSMUSG00000033170.15	ENSMUST00000164826.8	4726	21	27196	14	14669	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTGTCATAGAAGTTG	NA	False	NA	NA	False	NA	NA	NA	78660046	78659351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_78659400_78660000
66529	chr7	-	875	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	39	0	-3	0	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	2744	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTGGTTTTCTTGTGCT	6664	False	NA	NA	False	NA	NA	NA	118132540	118124284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
66530	chr6	+	959	1	Antisense	novelGene_ENSMUSG00000068250.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAGCCCTCTTAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	149089184	149090143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_149089200_149090100
66533	chr2	+	1161	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-17617	-10	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	76.4068059795723	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAGGAAAGTGTGGTGGT	1181	False	NA	NA	False	NA	NA	NA	60224251	60242913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_60224969_60241980_60242062_60242190_60242353_60242712
66534	chr18	-	1694	1	NIC	ENSMUSG00000048799.9	novel	4554	21	NA	NA	4370	5450	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGTCCTTTTGGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	53873242	53871548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_53871500_53873200
66535	chr15	+	2521	4	NNC	ENSMUSG00000116114.2	novel	833	4	NA	NA	-11	12	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	2.05480466765633	11	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTCAAAAGATCCTTTC	912	False	NA	NA	False	NA	NA	NA	101262609	101303727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101262699_101264782_101265322_101301319_101301441_101301955
66537	chr10	+	1194	1	Intergenic	novelGene_3435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCATCTGTCTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	44976931	44978125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_44976900_44978100
66538	chr3	-	714	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	46	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_2	82.0137183646736	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	84063047	83995239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_83995482_84000861_84000907_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
66539	chr17	+	1639	3	ISM	ENSMUSG00000117037.2	ENSMUST00000233302.2	1507	4	5918	-748	5918	748	3prime_fragment	FALSE	canonical	3	9	junction_1	0.5	15	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTCTGGTCCTGCTT	9154	False	NA	NA	False	NA	NA	NA	21742892	21752005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_21742938_21748201_21748329_21750538
66540	chr9	+	1809	8	NNC	ENSMUSG00000032342.14	novel	2366	12	NA	NA	15	-9437	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	24.1981615088453	3	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTTATTATTATACAT	NA	False	NA	NA	False	NA	NA	NA	78355509	78368586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368103
66541	chr14	+	2342	11	FSM	ENSMUSG00000021822.4	ENSMUST00000022368.4	2342	11	2	-2	2	2	multi-exon	FALSE	canonical	0	0	junction_1	0.66332495807108	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGGTTTCTCCATGAT	NA	False	NA	NA	False	NA	NA	NA	20886729	20893455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20886803_20887116_20887204_20887677_20887709_20887845_20887954_20888580_20888756_20889163_20889256_20889399_20889623_20889842_20889992_20890565_20890707_20891013_20891163_20892341
66542	chr18	+	2039	5	FSM	ENSMUSG00000041607.18	ENSMUST00000132369.3	1947	5	-95	3	15	-3	multi-exon	FALSE	canonical	1	4	junction_1	0.866025403784439	26	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGATCTTTGCCCAG	7791	False	NA	NA	False	NA	NA	NA	82572609	82603748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82572876_82590949_82591052_82593296_82593333_82597060_82597184_82602236
66544	chr10	-	1463	1	Intergenic	novelGene_3491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	83	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGTTTTTGAAGACTAC	NA	False	NA	NA	False	NA	NA	NA	81629331	81627868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_81627900_81629300
66546	chr1	+	2273	1	ISM	ENSMUSG00000026640.13	ENSMUST00000027952.12	11040	32	194762	10	9877	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCTTAAATCTTCATATA	NA	False	NA	NA	False	NA	NA	NA	194496894	194499167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_194496900_194499200
66549	chr2	-	845	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	10	3	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_4	707.75076042975	11	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTCTGTGGTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	90735036	90724974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732786_90733190_90733289_90734766_90734833_90734927
66550	chr13	-	1458	1	Intergenic	novelGene_1540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCACTTTGTAGAAGAGC	NA	False	NA	NA	False	NA	NA	NA	112608680	112607222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_112607200_112608700
66551	chr1	+	1891	11	NNC	ENSMUSG00000026203.17	novel	1855	10	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	13.7873130087048	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2251	False	NA	NA	False	NA	NA	NA	75213122	75222334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221206_75221235_75221437
66552	chr4	-	463	3	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	15	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	520	27	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATAGCCCCATGCTGGT	2628	False	NA	NA	False	NA	NA	NA	129229027	129203314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203675_129228351_129228438_129229010
66553	chr9	-	539	2	ISM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	500	1295	500	-1295	3prime_fragment	FALSE	canonical	3	2104	junction_1	0	276	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTCAGTTGATGGTTCGG	NA	False	NA	NA	False	NA	NA	NA	78285507	78284685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78284974_78285256
66554	chr9	-	2589	4	FSM	ENSMUSG00000034303.9	ENSMUST00000216042.2	1669	4	48	-968	17	968	multi-exon	FALSE	canonical	2	11	junction_3	4.92160768674447	9	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATATAAAGGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	37259636	37251737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_37253918_37255179_37255330_37259033_37259220_37259563
66555	chr17	-	966	1	Intergenic	novelGene_291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAAACTCTCACTTCCCT	NA	False	NA	NA	False	NA	NA	NA	69287713	69286747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_69286700_69287700
66556	chr8	+	978	1	Antisense	novelGene_ENSMUSG00000031513.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCCAAAGGACAAACTAAT	NA	False	NA	NA	False	NA	NA	NA	34606987	34607965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_34607000_34608000
66557	chr6	+	452	4	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26240	-9235	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	4.02768199119819	1	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACGTTTTTATTTCCAAAC	NA	False	NA	NA	False	NA	NA	NA	53821967	53835933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835823
66558	chr11	-	151	1	Intergenic	novelGene_2411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAGGCATATTTAAACAC	NA	False	NA	NA	False	NA	NA	NA	78150892	78150741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_78150700_78150900
66560	chr13	-	302	1	ISM	ENSMUSG00000021731.11	ENSMUST00000022245.10	3319	5	0	8570	0	-4072	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATCTCCGCCTTGAACG	NA	False	NA	NA	False	NA	NA	NA	118523788	118523486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_118523500_118523800
66561	chr9	-	1606	5	ISM	ENSMUSG00000032370.9	ENSMUST00000034929.7	2031	6	688	-7	624	2	3prime_fragment	FALSE	canonical	3	42	junction_2	9.40744386111339	37	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACTTTTCAGTTCCTAAG	383	False	NA	NA	False	NA	NA	NA	66882078	66862667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_66863483_66874960_66875127_66877863_66878219_66878457_66878649_66881999
66562	chr7	+	1419	1	Intergenic	novelGene_3023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAAACATAGCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	112446072	112447491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_112446100_112447500
66563	chr2	+	1276	6	ISM	ENSMUSG00000027296.8	ENSMUST00000028758.8	1818	7	6854	16	6854	-16	3prime_fragment	FALSE	canonical	3	155	junction_3	8.97997772825746	92	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAGCTTCTGTGACTCC	NA	False	NA	NA	False	NA	NA	NA	119579671	119581728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_119579768_119579842_119580060_119580153_119580359_119580574_119580677_119580957_119581030_119581144
66564	chr7	+	1580	8	ISM	ENSMUSG00000051048.18	ENSMUST00000208565.2	1215	9	3916	-454	3916	-7	3prime_fragment	FALSE	canonical	1	3	junction_5	4.23300925429402	8	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAACACATCTTCTAACA	NA	False	NA	NA	False	NA	NA	NA	99954703	99968898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_99954871_99955073_99955251_99959993_99960059_99962412_99962573_99963814_99963878_99966248_99966318_99967188_99967286_99968116
66565	chrX	+	2460	7	FSM	ENSMUSG00000031438.12	ENSMUST00000113026.2	2750	7	263	27	263	-20	multi-exon	FALSE	canonical	3	69	junction_2	9.49853789918334	36	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAATATTCCAATGAAA	NA	False	NA	NA	False	NA	NA	NA	138511631	138573867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_138512039_138543034_138543283_138559564_138559637_138564334_138564418_138565236_138565334_138566120_138566290_138572483
66566	chr2	+	852	1	NIC	ENSMUSG00000087283.2	novel	566	3	NA	NA	195	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGAAAGTGTGGTGGTAT	9541	False	NA	NA	False	NA	NA	NA	60242063	60242915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_60242100_60242900
66567	chr9	-	714	4	NNC	ENSMUSG00000032112.11	novel	1185	4	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	352.823846510786	3	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTCTCTCCTAACTGA	1717	False	NA	NA	False	NA	NA	NA	44318653	44315056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44315258_44316535_44316644_44318100_44318276_44318423
66568	chr17	+	1392	7	NNC	ENSMUSG00000073411.13	novel	1744	7	NA	NA	287	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	21.6133960517289	4	74	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACAGCTACAGTGTACT	2372	False	NA	NA	False	NA	NA	NA	35482358	35486278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35482625_35482814_35483091_35484759_35485036_35485164_35485216_35485442_35485491_35485663_35485697_35485836
66569	chr8	-	1097	6	NIC	ENSMUSG00000031954.7	novel	1178	7	NA	NA	-44	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	772.979016532791	88	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTGTGAGGTTGGTGAG	NA	False	NA	NA	False	NA	NA	NA	112580967	112495127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_112495420_112505882_112506042_112566989_112567118_112568414_112568623_112571725_112571844_112580775
66571	chr1	-	1794	7	NNC	ENSMUSG00000054770.17	novel	2512	7	NA	NA	1826	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.1859749331515	6	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGACTTTTCTGTGACTA	NA	False	NA	NA	False	NA	NA	NA	58006857	57994412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_57995109_57995687_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655
66572	chr17	+	698	3	NIC	ENSMUSG00000015575.16	novel	823	4	NA	NA	35	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	562	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	26895420	26918621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26895553_26914328_26914459_26918185
66573	chr7	-	1487	2	ISM	ENSMUSG00000059119.10	ENSMUST00000209098.2	2281	15	13130	18719	291	3680	intron_retention	FALSE	canonical	3	1109	junction_1	0	1	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAGTGACCAAGCTCCTT	5126	False	NA	NA	False	NA	NA	NA	143089435	143086043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_143086118_143088022
66574	chr7	-	1143	7	NNC	ENSMUSG00000061479.16	novel	1365	7	NA	NA	27	-75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1020.7214224372	2	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTCTGTCCCCAGACAT	NA	False	NA	NA	False	NA	NA	NA	26895551	26886506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_26886790_26888294_26888380_26888783_26888960_26891028_26891206_26892294_26892468_26894868_26894982_26895415
66576	chr11	+	2083	7	FSM	ENSMUSG00000048217.12	ENSMUST00000055409.6	2028	7	-57	2	-21	-2	multi-exon	FALSE	canonical	3	17	junction_2	3.13138237134266	21	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTTGTCTCAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	102036317	102040301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102036818_102037315_102037591_102037688_102037903_102038189_102038371_102038635_102038808_102038917_102039101_102039743
66577	chr13	-	852	2	Genic_Genomic	ENSMUSG00000049233.8	novel	586	1	NA	NA	-39	293	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAATATTG	NA	False	NA	NA	False	NA	NA	NA	107551268	107550350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_107550611_107550676
66579	chr19	+	2235	11	FSM	ENSMUSG00000036908.18	ENSMUST00000162708.7	2266	11	18	13	18	-12	multi-exon	FALSE	canonical	2	7	junction_5	6.90579466824782	26	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTCTGGAGAGGGTG	5203	False	NA	NA	False	NA	NA	NA	3985203	3999327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_3985353_3985761_3985904_3986268_3986423_3991519_3991682_3991884_3992018_3992348_3992443_3992693_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
66580	chr4	+	726	7	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	5772	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	374.274743114378	11	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGCCCTGGATGAGGC	NA	False	NA	NA	False	NA	NA	NA	135981055	136002214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135981120_135991815_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
66581	chr19	-	890	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	158	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	8775941	8770490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
66582	chr17	+	709	4	NNC	ENSMUSG00000071172.14	novel	4010	4	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	669.394419523265	1	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGTTTAACTTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255268_29260366_29260682_29260844
66583	chr2	+	1277	6	Antisense	novelGene_ENSMUSG00000016257.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGAAGTTCGCCGGCCC	2208	False	NA	NA	False	NA	NA	NA	174306964	174314703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_174307729_174308517_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
66584	chr12	+	1093	4	Antisense	novelGene_ENSMUSG00000021242.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAGCTCTGCAATCTAG	NA	False	NA	NA	False	NA	NA	NA	84803267	84819648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_84803987_84807493_84807682_84812061_84812158_84819558
66585	chr14	-	1184	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	102	861	73	9	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGATCGTGATGTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	25927994	25924584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
66587	chr1	+	1095	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027064.8	1261	5	169	-3	169	0	multi-exon	FALSE	canonical	3	9	junction_4	35.5984550226551	128	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTCATTCATTTCTAT	NA	False	NA	NA	False	NA	NA	NA	21289054	21300391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299631
66588	chr11	-	1395	3	ISM	ENSMUSG00000017405.15	ENSMUST00000142812.8	2876	4	-51	1610	10	-414	5prime_fragment	FALSE	canonical	3	45	junction_1	5.5	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTTTTTTTTTTTTTTT	6258	False	NA	NA	False	NA	NA	NA	78067491	78062426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_78063510_78063750_78063957_78067385
66589	chr16	-	436	2	Genic_Genomic	ENSMUSG00000050299.9	novel	402	1	NA	NA	-59	55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGTACTTGCAAAGCA	NA	False	NA	NA	False	NA	NA	NA	76200599	76200083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_76200223_76200302
66591	chr4	-	1210	8	NNC	ENSMUSG00000028218.20	novel	648	7	NA	NA	52	52993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	131.585310265056	1350	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGCATTTCAGATTTAAT	13	True	NA	NA	False	NA	NA	NA	12171819	12100415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_12100753_12155648_12155769_12157650_12157765_12164087_12164199_12168222_12168325_12168964_12169034_12170983_12171219_12171697
66593	chr7	+	829	6	FSM	ENSMUSG00000078765.12	ENSMUST00000165524.9	582	6	-66	-181	-13	1	multi-exon	FALSE	canonical	3	472	junction_3	63.1905056159547	46	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTGTGGTTTCCTT	61	False	NA	NA	False	NA	NA	NA	30263237	30264785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
66594	chr17	-	1402	7	FSM	ENSMUSG00000039183.7	ENSMUST00000044252.7	1427	7	20	5	1	0	multi-exon	FALSE	canonical	3	605	junction_4	56.4111888034831	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	25105302	25101590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
66595	chr4	+	648	5	NNC	ENSMUSG00000065990.13	novel	1159	4	NA	NA	16	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	992.591400073565	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	155916141	155917521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155916193_155916439_155916528_155916808_155916943_155917053_155917255_155917347
66596	chr17	+	1703	4	Antisense	novelGene_ENSMUSG00000038500.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCGGCATAGCGGCTGCG	NA	False	NA	NA	False	NA	NA	NA	36283448	36290120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36284698_36285416_36285706_36289272_36289335_36290017
66600	chrX	+	697	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	337	-107	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACACCACCTCCAAATTT	NA	False	NA	NA	False	NA	NA	NA	13069146	13069912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069206_13069274
66601	chr13	-	1486	2	ISM	ENSMUSG00000021760.6	ENSMUST00000022282.6	1042	3	22	12	5	-12	intron_retention	FALSE	canonical	3	31	junction_1	0	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTTGCAAAATATAAAGT	NA	False	NA	NA	False	NA	NA	NA	113182922	113179304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_113179834_113181965
66602	chr11	+	814	7	FSM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	0	3	0	-3	multi-exon	FALSE	canonical	3	315	junction_4	19.5739339144917	1788	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTGGGGCCTTCATTTC	NA	False	NA	NA	False	NA	NA	NA	61395969	61403754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61403477
66603	chr13	+	2893	18	ISM	ENSMUSG00000021583.8	ENSMUST00000169114.3	5644	19	6601	2427	6296	-2427	3prime_fragment	TRUE	canonical	1	4	junction_15	2.17249238971993	22	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTCAATTTGAGTATTTT	NA	False	NA	NA	False	NA	NA	NA	74794287	74838893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_74794834_74805751_74805891_74808388_74808524_74810427_74810549_74811527_74811683_74812227_74812342_74814217_74814350_74814562_74814695_74814836_74814909_74816076_74816232_74817518_74817599_74819426_74819611_74820862_74821020_74821713_74821899_74822740_74822903_74823381_74823523_74823943_74824026_74838692
66604	chr7	-	1493	13	FSM	ENSMUSG00000041560.13	ENSMUST00000044158.13	3176	13	29	1654	10	1	multi-exon	FALSE	canonical	3	1334	junction_1	195.89089579548	876	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCTGGGGTCTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	15679970	15671761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
66605	chr13	-	804	6	NNC	ENSMUSG00000021660.15	novel	888	6	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2626.11842840341	5	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453498	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98446710_98447488_98447546_98449599_98449780_98450192_98450261_98452737_98452807_98453373
66606	chr6	+	1177	5	ISM	ENSMUSG00000030329.12	ENSMUST00000160704.8	1116	6	320	-138	291	138	3prime_fragment	FALSE	canonical	3	36	junction_1	6.9462219947249	9	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCATTCACGTCTGCTCAG	NA	False	NA	NA	False	NA	NA	NA	124975892	124979244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
66608	chr5	-	3389	1	Intergenic	novelGene_978	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCCATTCTGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	150543368	150539979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_150540000_150543400
66609	chr17	-	1440	2	ISM	ENSMUSG00000037326.11	ENSMUST00000212149.2	4555	12	19994	20	3861	-16	3prime_fragment	TRUE	canonical	3	78	junction_1	0	40	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTGTTTTGTTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	26178873	26177360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_26178708_26178780
66610	chr5	-	1622	1	NIC	ENSMUSG00000029145.13	novel	2025	13	NA	NA	19	-169	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCGTTTCGAGATGTAT	NA	False	NA	NA	False	NA	NA	NA	31350464	31348842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31348800_31350500
66611	chr18	-	1298	1	ISM	ENSMUSG00000033184.15	ENSMUST00000143178.2	7982	2	10277	3	10075	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAATTGCCTTCACTTGT	8049	False	NA	NA	False	NA	NA	NA	46720306	46719008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_46719000_46720300
66612	chr16	+	1147	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	-46	-2	21	2	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	199	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCTCTGTCTCTAATGT	NA	False	NA	NA	False	NA	NA	NA	91169691	91190930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
66614	chr18	+	528	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	57	12	-12	-7	multi-exon	FALSE	canonical	3	20921	junction_1	2863.01274883644	3	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTAAGCTATTTTGGTT	NA	False	NA	-29	True	NA	NA	NA	60907724	60911606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
66616	chr13	-	2269	14	NNC	ENSMUSG00000021311.10	novel	8294	33	NA	NA	-61	-13410	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	48.1207799963344	20	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGCTGGCCTTCAATT	5882	False	NA	NA	False	NA	NA	NA	12273060	12245175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256555_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12264730_12264801_12265487_12265578_12268649_12268865_12272747
66617	chr8	+	1282	9	FSM	ENSMUSG00000036598.5	ENSMUST00000041569.5	1288	9	6	0	6	0	multi-exon	FALSE	canonical	2	7	junction_1	2.77263412660235	65	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTCCTCTCACTTGTTG	NA	False	NA	NA	False	NA	NA	NA	96260718	96285518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_96260901_96263092_96263220_96264719_96264882_96267426_96267583_96269249_96269331_96272521_96272678_96277824_96277933_96283818_96283975_96285364
66618	chr1	+	1561	5	Antisense	novelGene_ENSMUSG00000026656.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGAAAGGAGGGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	170788198	170796222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_170788669_170788764_170788805_170793272_170793394_170794013_170794273_170795551
66619	chr2	+	1025	6	NIC	ENSMUSG00000001999.16	novel	772	7	NA	NA	-2	413	combination_of_known_junctions	FALSE	canonical	3	37	junction_5	66.545022353291	79	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAATAATATATTGTGAG	2235	False	NA	NA	False	NA	NA	NA	126912610	126932682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126932163
66620	chr8	-	685	5	FSM	ENSMUSG00000058833.12	ENSMUST00000075175.12	671	5	-14	0	-14	0	multi-exon	FALSE	canonical	3	754	junction_4	53.0518614188041	2186	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	NA	False	NA	NA	NA	70959416	70956944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146_70959230_70959311
66621	chr11	-	1451	4	FSM	ENSMUSG00000020773.12	ENSMUST00000141531.8	1503	4	45	7	-39	-7	multi-exon	FALSE	canonical	3	121	junction_3	17.6131264181639	213	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGATTCCCCCTTT	NA	False	NA	NA	False	NA	NA	NA	115998900	115996584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603
66622	chr11	-	741	7	NNC	ENSMUSG00000014195.17	novel	1399	13	NA	NA	-1532	-1368	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	975.080751641741	1	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACGAGGACAAAGGGGCA	4715	False	NA	NA	False	NA	NA	NA	100489506	100475808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100475882_100480723_100480816_100481712_100481859_100482221_100482392_100483680_100483800_100486991_100487067_100489440
66624	chr4	+	1264	5	FSM	ENSMUSG00000028848.14	ENSMUST00000105899.2	996	5	-29	-239	28	-6	multi-exon	FALSE	canonical	3	9	junction_1	62.5154980784765	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATAACGTTTTTTTAGT	NA	False	NA	NA	False	NA	NA	NA	133311700	133319040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_133312112_133313220_133313378_133315810_133315972_133317077_133317209_133318636
66628	chr1	-	1656	4	ISM	ENSMUSG00000026000.17	ENSMUST00000149996.2	570	5	-45	9770	-7	-94	5prime_fragment	FALSE	canonical	3	85	junction_3	128.232427862673	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACATTTTTAATATAACT	NA	False	NA	NA	False	NA	NA	NA	67078038	67058861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_67060225_67073282_67073401_67077653_67077751_67077960
66629	chr16	+	656	1	Intergenic	novelGene_3622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTGTTTAAAAAAACAAAAC	7924	False	NA	NA	False	NA	NA	NA	22937569	22938225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_22937600_22938200
66630	chr6	+	690	5	NNC	ENSMUSG00000030291.13	novel	623	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	130.682822130531	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGGTTTTTGTTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	146544076	146552099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608_146551813_146551903
66631	chr19	+	579	1	ISM	ENSMUSG00000053080.11	ENSMUST00000159348.3	4989	5	6019	1682	2616	884	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAGGAAGAACTGAGATG	NA	False	NA	NA	False	NA	NA	NA	7401008	7401587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_7401000_7401600
66632	chr19	+	1224	1	ISM	ENSMUSG00000053080.11	ENSMUST00000159348.3	4989	5	7001	55	3598	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	36	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTCTTACTTCACCCAAA	NA	False	NA	NA	False	NA	NA	NA	7401990	7403214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_7402000_7403200
66633	chr13	+	1886	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	5	225	5	-225	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	121	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTATAAAAATGTGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	76328548	76338000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
66634	SIRV6	+	495	7	NNC	SIRV6A	novel	574	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9087.35477493619	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1130	11279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1697_3092_3165_10724_10819_11031_11109_11205
66635	chr10	+	1172	10	ISM	ENSMUSG00000036168.16	ENSMUST00000092215.6	3656	16	9452	8965	52	1314	internal_fragment	FALSE	canonical	0	0	junction_7	1.72848324290045	1	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCCAGGCTCTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	93385945	93411224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_93386190_93391380_93391446_93398592_93398757_93399066_93399148_93401655_93401808_93403525_93403619_93405737_93405796_93406708_93406782_93409872_93410025_93411134
66636	chr7	-	805	4	FSM	ENSMUSG00000040231.17	ENSMUST00000120299.4	722	4	-22	-61	7	0	multi-exon	FALSE	canonical	3	35	junction_1	18.0616229121921	267	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCCTGTCTGTTCCTC	NA	False	NA	NA	False	NA	NA	NA	45546116	45536268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45536550_45538035_45538274_45545114_45545316_45546031
66637	chr7	+	1026	8	ISM	ENSMUSG00000000154.17	ENSMUST00000105917.3	1552	11	4661	12	4661	-12	3prime_fragment	FALSE	canonical	2	4	junction_1	2.24971653543195	32	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACCTCTTCCTCTTAAA	6882	False	NA	NA	False	NA	NA	NA	143033498	143053050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_143033618_143034126_143034260_143044548_143044662_143045482_143045591_143046578_143046680_143050687_143050790_143051046_143051168_143052821
66638	chr6	-	1804	9	FSM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	123	482	-2	-482	multi-exon	FALSE	canonical	2	9	junction_7	2.57087047515039	25	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAACTTATTTGTTTGTTT	7	True	NA	NA	False	NA	NA	NA	5298332	5264628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_5265480_5266111_5266241_5266964_5267047_5268977_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5289012_5289084_5298211
66639	chr9	+	1677	1	NIC	ENSMUSG00000040541.9	novel	987	4	NA	NA	686	-101	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTGCATAGTACACTAAT	9705	False	NA	NA	False	NA	NA	NA	40060126	40061803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_40060100_40061800
66640	chr8	-	3146	3	ISM	ENSMUSG00000031561.17	ENSMUST00000110346.9	2267	10	138066	29574	-117148	2555	internal_fragment	FALSE	canonical	3	80	junction_2	6.5	3	78	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGCCCCAAATCCCCATA	NA	False	NA	NA	False	NA	NA	NA	48870282	48817801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_48820469_48848470_48848710_48870042
66642	chr8	+	822	4	NNC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	1289	62	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	243.803655063295	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTCAAGATATATATA	NA	False	NA	NA	False	NA	NA	NA	80439768	80502033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_80439909_80446286_80446378_80455761_80455880_80501560
66643	chr2	-	793	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	68	0	68	0	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	False	NA	NA	False	NA	NA	NA	35939350	35926337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
66645	chr11	+	2090	4	NNC	ENSMUSG00000020455.17	novel	3522	5	NA	NA	1	-7769	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	37.249906785864	23	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTCTCTTCATGTCCCCC	1690	False	NA	NA	False	NA	NA	NA	58868942	58874512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_58869471_58872066_58872163_58872818_58874206_58874433
66646	chr17	-	1840	4	Antisense	novelGene_ENSMUSG00000067150.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGAGTCCCAGAAGTTGG	281	False	NA	NA	False	NA	NA	NA	46520413	46513725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_46513942_46517410_46517486_46518704_46518839_46518998
66649	chr7	+	965	7	ISM	ENSMUSG00000064254.7	ENSMUST00000077191.7	1484	8	6338	0	6338	0	3prime_fragment	FALSE	canonical	3	79	junction_1	14.7384606462894	181	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGTTCTGCTTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	24293305	24308350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_24293437_24293842_24293988_24294424_24294574_24305629_24305760_24307292_24307383_24307776_24307894_24308147
66650	chr11	-	2083	5	FSM	ENSMUSG00000044296.11	ENSMUST00000049625.2	2408	5	36	289	30	-241	multi-exon	FALSE	canonical	0	0	junction_2	1.08972473588517	7	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGTATGTGGATTCTTTG	NA	False	NA	NA	False	NA	NA	NA	50732343	50723150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50724799_50728736_50728833_50729236_50729364_50731352_50731418_50732196
66652	chr7	+	2066	4	ISM	ENSMUSG00000033961.17	ENSMUST00000045810.15	4615	6	128	4478	83	-227	5prime_fragment	FALSE	canonical	2	6	junction_1	12.0277457017791	4	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTTGCAAATGTAGCTCA	NA	False	NA	NA	False	NA	NA	NA	12711902	12715163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_12712040_12712924_12713306_12713377_12713574_12713811
66653	chr6	+	1200	1	Antisense	novelGene_ENSMUSG00000030268.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTTCTCTCTAATTTT	NA	False	NA	NA	False	NA	NA	NA	145020878	145022078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_145020900_145022100
66655	chr3	+	1422	7	NNC	ENSMUSG00000078578.10	novel	738	8	NA	NA	72	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1155.74960042774	1	99	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGAGTTAGCTGCCTG	NA	False	NA	NA	False	NA	NA	NA	135144148	135171816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144194_135145404_135145560_135160946_135161030_135164558_135164637_135165735_135165842_135168710_135168805_135170955
66657	chr5	+	1879	10	NNC	ENSMUSG00000034573.15	novel	7915	48	NA	NA	50396	47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.06955568166563	23	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGACAACCAATTCAGACAT	4828	False	NA	NA	False	NA	NA	NA	103727827	103746216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_103727978_103728535_103728619_103730604_103730643_103734582_103734676_103735908_103736058_103737723_103737815_103738881_103739220_103741372_103741589_103742482_103742546_103745558
66658	chr5	+	1508	1	Intergenic	novelGene_715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGCCGGTGCAATCCT	NA	False	NA	NA	False	NA	NA	NA	53743754	53745262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_53743800_53745300
66659	chr7	-	2623	1	Intergenic	novelGene_2984	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACACACACACACACACACA	NA	False	NA	NA	False	NA	NA	NA	78978562	78975939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_78975900_78978600
66660	chr11	+	949	2	Genic_Genomic	ENSMUSG00000081346.2	novel	223	1	NA	NA	-1991	105	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTGATACTCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20090576	20092895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_20091147_20092516
66663	chr5	-	2991	12	FSM	ENSMUSG00000035273.15	ENSMUST00000045617.15	3117	12	117	9	106	-9	multi-exon	FALSE	canonical	2	11	junction_7	2.99862227317648	14	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCTCAATTTGCATGGTC	NA	False	NA	NA	False	NA	NA	NA	100867465	100827358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100828897_100832845_100832993_100836686_100836806_100839164_100839280_100840048_100840156_100840750_100840845_100842017_100842066_100843352_100843522_100846778_100846953_100856522_100856649_100859194_100859341_100867257
66664	chr4	-	1426	9	NNC	ENSMUSG00000036078.17	novel	1087	3	NA	NA	-2512	-676	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGATGATTGGCTAGTCGC	NA	False	NA	NA	False	NA	NA	NA	41758669	41755503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41755652_41755959_41756129_41756344_41756418_41756507_41756561_41756937_41756994_41757153_41757277_41757457_41757592_41757693_41757778_41758083
66667	chr3	+	1820	3	FSM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	536	1062	467	-1062	multi-exon	FALSE	canonical	3	754	junction_2	15.5	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAACTTTGAACCTAAAT	6953	False	NA	NA	False	NA	NA	NA	95566634	95569425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95566799_95567071_95567320_95568017
66668	chr5	-	1260	7	FSM	ENSMUSG00000029544.17	ENSMUST00000031519.14	1370	7	110	0	-77	0	multi-exon	FALSE	canonical	3	35	junction_6	80.5826008239716	123	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	9975	False	NA	NA	False	NA	NA	NA	115324257	115306747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850_115319031_115324070
66669	chr16	+	1437	6	ISM	ENSMUSG00000009569.15	ENSMUST00000009713.14	5815	17	8596	29884	1	-29884	internal_fragment	FALSE	canonical	3	39	junction_5	9.87927122818278	7	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGTTGAGAGGAGGGTC	NA	False	NA	NA	False	NA	NA	NA	13082940	13203043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_13083004_13144245_13144436_13196127_13196194_13197703_13197760_13199391_13199468_13202057
66671	chr10	+	1492	5	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-11	-1789	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	32.0341614530488	101	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTAGTATCATTTATAG	NA	False	NA	NA	False	NA	NA	NA	103203632	103231230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850
66672	chr1	-	1257	1	FSM	ENSMUSG00000077704.3	ENSMUST00000104516.3	110	1	6	-1153	6	1153	mono-exon	FALSE	NA	NA	NA	NA	NA	72	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAAAGTTGATTGTGGT	NA	False	NA	-68	True	NA	NA	NA	39587929	39586672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_39586700_39587900
66673	chr16	+	1071	5	FSM	ENSMUSG00000022792.17	ENSMUST00000059955.15	1574	5	458	45	-117	-37	multi-exon	FALSE	canonical	3	300	junction_2	32.9952648117878	112	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCATTTCAAAATAAAATG	9977	False	NA	NA	False	NA	NA	NA	16121299	16127459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
66676	chr2	+	438	1	Genic_Genomic	ENSMUSG00000038533.16	novel	NA	NA	NA	NA	1993	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTCTGATTTAAATTGT	NA	False	NA	NA	False	NA	NA	NA	154367896	154368334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_154367900_154368300
66678	chr2	-	916	1	Antisense	novelGene_ENSMUSG00000033368.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCATTTTCAACCACACATA	NA	False	NA	NA	False	NA	NA	NA	122003883	122002967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_122003000_122003900
66679	chr6	-	1703	4	ISM	ENSMUSG00000025607.16	ENSMUST00000131256.8	961	10	35322	-1226	35018	1226	3prime_fragment	FALSE	canonical	2	3	junction_1	117.7351075744	3	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAGTATTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	30838343	30834135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_30835553_30835672_30835831_30836822_30836910_30838302
66681	chr5	+	985	4	NNC	ENSMUSG00000037905.14	novel	745	4	NA	NA	88	369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	187.894178255267	6	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAGCTTTGAAGGGAACG	NA	False	NA	NA	False	NA	NA	NA	125518719	125532159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_125518753_125518877_125518957_125528733_125528837_125531389
66683	chr15	+	552	1	Antisense	novelGene_ENSMUSG00000022292.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAGAAAATAAGGAGACAG	NA	False	NA	NA	False	NA	NA	NA	37944864	37945416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_37944900_37945400
66684	chr8	+	1826	3	FSM	ENSMUSG00000033313.12	ENSMUST00000036221.12	1901	3	41	34	7	-34	multi-exon	FALSE	canonical	1	1	junction_1	1.5	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAAAGTAAATAAATCCTT	1571	False	NA	NA	False	NA	NA	NA	105991320	105995924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105991393_105993326_105993798_105994641
66685	chr15	-	1785	1	Antisense	novelGene_ENSMUSG00000023025.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTTTACATACAAGTGC	NA	False	NA	NA	False	NA	NA	NA	99891224	99889439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_99889400_99891200
66686	chr2	+	1134	8	FSM	ENSMUSG00000074797.12	ENSMUST00000103193.5	1390	8	253	3	-2	-3	multi-exon	TRUE	canonical	3	338	junction_5	87.1842992792643	1938	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCCTGTCTGTCTTGAG	5488	False	NA	NA	False	NA	NA	NA	130509782	130523531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158_130516191_130517548_130517665_130521254_130521332_130522892
66687	chr4	+	2267	14	Antisense	novelGene_ENSMUSG00000037622.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGGGGTGGGAGGGGCT	NA	False	NA	NA	False	NA	NA	NA	133023348	133080242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133023905_133024730_133024966_133027870_133028046_133029029_133029139_133029693_133029765_133030859_133030976_133031459_133031557_133033134_133033320_133036060_133036248_133040617_133040730_133041070_133041117_133049481_133049566_133051137_133051284_133080094
66688	chr19	-	1383	13	FSM	ENSMUSG00000024659.16	ENSMUST00000025561.8	1674	13	291	0	-2	0	multi-exon	FALSE	canonical	3	18	junction_4	3.1446603773522	85	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	7296	False	NA	NA	False	NA	NA	NA	20368017	20350791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20367975
66690	chr4	-	1312	3	NNC	ENSMUSG00000073705.11	novel	686	2	NA	NA	181	-537	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	198	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATCTATGACGGGGAGA	NA	False	NA	NA	False	NA	NA	NA	149214732	149212114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149212784_149212865_149213386_149214609
66691	chr14	+	795	9	Antisense	novelGene_ENSMUSG00000022130.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCCGTAAAGCGCGGCGT	NA	False	NA	NA	False	NA	NA	NA	118352545	118370159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_118352590_118353493_118353661_118354383_118354424_118355146_118355209_118357051_118357150_118359129_118359274_118365634_118365704_118368018_118368086_118370055
66692	chr14	-	1902	1	FSM	ENSMUSG00000115007.2	ENSMUST00000228874.2	1299	1	1	-604	1	604	mono-exon	FALSE	NA	NA	NA	NA	NA	10	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCATAACCCTTGACCTT	8024	False	NA	NA	False	NA	NA	NA	34395719	34393817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_34393800_34395700
66693	chr16	+	1063	3	FSM	ENSMUSG00000051483.10	ENSMUST00000039659.9	1237	3	9	165	9	-4	multi-exon	FALSE	canonical	3	426	junction_1	12.5	1805	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTTTACAAATGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	93404733	93407228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_93405143_93405676_93405785_93406682
66694	chr7	+	772	6	NNC	ENSMUSG00000030842.13	novel	1119	5	NA	NA	16	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	341.132818708491	687	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTGCTGGTTCAACC	7043	False	NA	NA	False	NA	NA	NA	101555126	101561092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479_101560606_101560918
66695	chr5	-	2179	3	FSM	ENSMUSG00000029352.15	ENSMUST00000155042.8	1419	3	423	-1183	423	-2	multi-exon	FALSE	canonical	3	12	junction_1	4.5	9	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTCTGTCTGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	113227834	113223706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113225544_113226248_113226382_113227625
66696	chr11	-	1028	7	ISM	ENSMUSG00000020289.16	ENSMUST00000020530.12	2865	13	45	9696	-4	2	5prime_fragment	FALSE	canonical	3	159	junction_4	11.916375287813	20	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTCAGACATGACCTT	4612	False	NA	NA	False	NA	NA	NA	32217662	32191658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
66697	chr5	-	1645	1	ISM	ENSMUSG00000048163.14	ENSMUST00000100874.6	1855	2	10255	55	-680	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	32	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTGCGGCCTGGCCCAGC	3508	False	NA	NA	False	NA	NA	NA	113958307	113956662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_113956700_113958300
66699	chr17	-	1549	1	ISM	ENSMUSG00000024105.4	ENSMUST00000024914.4	2544	4	38547	21	38547	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTTCCTGGGAGACCGA	NA	False	NA	NA	False	NA	NA	NA	66863069	66861520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_66861500_66863100
66700	chr17	+	1286	6	FSM	ENSMUSG00000079547.5	ENSMUST00000114232.4	1404	6	108	10	108	-10	multi-exon	FALSE	canonical	3	11	junction_3	6.61513416341649	95	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTTCTCCCAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	34372153	34379194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34372428_34374406_34374689_34376219_34376505_34378317_34378435_34378602_34378639_34378902
66701	chr13	-	838	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	258.302632584339	1029	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCCTTCGTATTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	108295138	108189124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_108189489_108217886_108217928_108228067_108228158_108269606_108269788_108294976
66702	chr14	+	4098	1	Intergenic	novelGene_635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	78	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGCACTGTAGGATGGA	NA	False	NA	NA	False	NA	NA	NA	100181417	100185515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_100181400_100185500
66703	chr17	+	1447	8	ISM	ENSMUSG00000040276.16	ENSMUST00000097360.3	1800	10	17483	-31	-1777	-2	3prime_fragment	TRUE	canonical	3	26	junction_1	11.2866184086307	138	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACAGCGTTTGCAGCCTA	NA	False	NA	NA	False	NA	NA	NA	27921653	27927664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_27921831_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
66704	chr19	-	948	6	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-34	-641	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	467.251281432165	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGAGCCCGAGTGTGCGCT	NA	False	NA	NA	False	NA	NA	NA	7181818	7176215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176602_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754
66705	chr15	-	1764	1	NIC	ENSMUSG00000022432.8	novel	4047	25	NA	NA	17222	-42083	mono-exon	FALSE	NA	NA	NA	NA	NA	27	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTATTCAGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	84998943	84997179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_84997200_84998900
66707	chr13	+	1030	4	Intergenic	novelGene_1454	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	117	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGAACTGTTTTTCTAGA	NA	False	NA	NA	False	NA	NA	NA	66846525	66972314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66846635_66970266_66970308_66970661_66970729_66971501
66708	chrX	-	2370	9	FSM	ENSMUSG00000035847.16	ENSMUST00000101509.9	4972	9	109	2493	109	-2493	multi-exon	FALSE	canonical	3	25	junction_4	5.15842757049084	7	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTGTTATTCACAATG	NA	False	NA	NA	False	NA	NA	NA	69408581	69389167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_69390280_69394532_69394707_69396749_69396877_69401872_69402044_69403554_69403756_69404648_69404738_69406582_69406761_69407407_69407545_69408400
66709	chrX	-	796	3	NIC	ENSMUSG00000046032.17	novel	1114	6	NA	NA	8	6	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	95.5	25	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCTAGTTTCTCTTATT	NA	False	NA	NA	False	NA	NA	NA	100266147	100141385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100141834_100145973_100146042_100265867
66711	chr11	+	466	1	NIC	ENSMUSG00000002055.10	novel	3887	24	NA	NA	2063	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTCCAGTCCACTGAAT	NA	False	NA	NA	False	NA	NA	NA	78212814	78213280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78212800_78213300
66712	chr7	+	779	4	ISM	ENSMUSG00000044737.7	ENSMUST00000056329.7	1271	5	1564	435	1564	-435	3prime_fragment	FALSE	canonical	0	0	junction_2	0.816496580927726	1	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGAGTCCTCCTTAGCT	NA	False	NA	NA	False	NA	NA	NA	43341405	43344525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43341559_43343378_43343633_43343757_43343895_43344290
66713	chr17	+	1016	5	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	12246	0	242	0	3prime_fragment	FALSE	canonical	3	414	junction_3	11.4972822875669	264	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGGTGATTGTTTCAG	1763	False	NA	NA	False	NA	NA	NA	35130192	35133027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
66714	chrX	-	1761	10	FSM	ENSMUSG00000058252.7	ENSMUST00000078605.7	1776	10	0	15	0	-15	multi-exon	FALSE	canonical	1	3	junction_3	2.8588178511708	26	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGCTGCAAGAAAACATCA	6971	False	NA	NA	False	NA	NA	NA	134594539	134555461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_134555875_134558185_134558350_134559471_134559654_134559749_134559968_134561192_134561330_134565131_134565353_134566154_134566276_134570064_134570177_134593910_134594046_134594481
66716	chr1	-	1349	1	ISM	ENSMUSG00000041670.20	ENSMUST00000081544.14	6605	28	486976	6	28200	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTCAGTTGGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	22357829	22356480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_22356500_22357800
66719	chr13	+	2749	1	Intergenic	novelGene_1306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	76	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAGGATTCGACAGAGC	NA	False	NA	NA	False	NA	NA	NA	6680388	6683137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_6680400_6683100
66720	chr1	+	671	10	NNC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_6	1930.17385515168	280	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864742_160865059_160865118_160865564_160865608_160865794_160865843_160866026
66721	chr3	+	548	4	NIC	ENSMUSG00000039221.11	novel	552	4	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	450	junction_2	3086.0505864652	413	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	NA	False	NA	NA	NA	28859659	28861571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_28859693_28860651_28860742_28860818_28861008_28861335
66722	chr4	-	2564	1	Antisense	novelGene_ENSMUSG00000028333.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAATTTTTCCATCCATTG	9441	False	NA	NA	False	NA	NA	NA	46462704	46460140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_46460100_46462700
66724	chr12	+	928	5	ISM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	248	5781	248	213	5prime_fragment	FALSE	canonical	3	493	junction_1	100.648832581407	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAAAAGCTTTATATAT	NA	False	NA	NA	False	NA	NA	NA	72132878	72141854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459
66725	chr2	-	794	5	FSM	ENSMUSG00000009549.15	ENSMUST00000138189.2	765	5	-18	-11	-18	0	multi-exon	FALSE	canonical	2	110	junction_4	586.489130334058	7181	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGTTTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	118310147	118306330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310030
66726	chr4	-	1999	3	ISM	ENSMUSG00000050989.11	ENSMUST00000060435.8	3445	12	11286	59	142	-59	3prime_fragment	FALSE	canonical	3	16	junction_1	1	10	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCTTTGTTCCCCCATC	NA	False	NA	NA	False	NA	NA	NA	134268191	134265261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_134267101_134267944_134268047_134268133
66729	chr11	-	1551	3	FSM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	-26	15	-7	-10	multi-exon	FALSE	canonical	3	28	junction_1	0.5	56	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATGTGGACAAATGAAG	NA	False	NA	NA	False	NA	NA	NA	16901125	16885168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_16886565_16900881_16900931_16901019
66731	chr17	+	880	6	NIC	ENSMUSG00000024132.7	novel	1137	7	NA	NA	4	17	combination_of_known_splicesites	TRUE	canonical	0	0	junction_2	219.496332543394	7	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACAGCTGCCACATATGT	4886	False	NA	NA	False	NA	NA	NA	24645660	24658211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24645717_24645826_24645914_24655151_24655299_24656193_24656316_24656405_24656585_24657922
66732	chr5	-	1306	12	ISM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	3402	4	328	-4	3prime_fragment	FALSE	canonical	3	153	junction_8	20.0610638050861	112	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCAGCCTTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	24803608	24797623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589
66733	chr7	-	864	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	172	11	-17	1	multi-exon	FALSE	canonical	3	721	junction_2	48.5546656414763	1185	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCCTTGTATGATGGTA	2223	False	NA	NA	False	NA	NA	NA	79882389	79876905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
66734	chr17	-	1411	8	NIC	ENSMUSG00000002496.11	novel	6018	40	NA	NA	-792	-12	intron_retention	FALSE	canonical	3	268	junction_6	19.2904756027318	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGCAGCACAGACAGCA	NA	False	NA	NA	False	NA	NA	NA	24818848	24815474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24815741_24815828_24815928_24816019_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530
66737	chr8	+	2751	1	ISM	ENSMUSG00000054823.18	ENSMUST00000142395.8	10105	24	114635	9	16949	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	20	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACTTAAGAATATGGGCT	NA	False	NA	NA	False	NA	NA	NA	26206934	26209685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26206900_26209700
66738	chr8	+	703	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	44	-2	5	2	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	8	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTGGTTCATTCTTTG	NA	False	NA	NA	False	NA	NA	NA	121395004	121400948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
66739	chr1	+	1070	7	NNC	ENSMUSG00000026078.11	novel	3914	6	NA	NA	-48	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	351.864438858679	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAATAACAGTGCAAAA	NA	False	NA	NA	False	NA	NA	NA	39026873	39035720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221_39035296_39035355
66740	chr9	-	1310	9	NNC	ENSMUSG00000032386.16	novel	661	3	NA	NA	12	-16325	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	90.1859190783129	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAATCCAAGGTGTATT	NA	False	NA	NA	False	NA	NA	NA	65792325	65762616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_65762767_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65786356_65786491_65788172_65788343_65792209
66741	chr19	+	1775	4	FSM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	0	8	0	-4	multi-exon	FALSE	canonical	3	32	junction_3	20.1163283594862	101	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTAATCTTTTCTTAAC	NA	False	NA	NA	False	NA	NA	NA	4806598	4815960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4806690_4807273_4807698_4812004_4812676_4815371
66742	chr11	+	3117	1	ISM	ENSMUSG00000018654.18	ENSMUST00000065433.12	4697	9	83000	71	82480	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	6	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTATATGCTGTATCAGA	NA	False	NA	NA	False	NA	NA	NA	11718924	11722041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_11718900_11722000
66743	chr6	-	1442	6	NNC	ENSMUSG00000089997.3	novel	3678	16	NA	NA	365	-36445	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9.04212364436585	3	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACTACGCACATTCACTT	NA	False	NA	NA	False	NA	NA	NA	87699418	87689019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87689250_87690283_87690360_87691104_87691249_87694858_87695064_87695769_87695958_87698819
66744	chr13	+	1288	1	ISM	ENSMUSG00000042015.18	ENSMUST00000160801.8	3062	14	45678	0	4442	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTGGGTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	95158533	95159821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_95158500_95159800
66745	chr12	-	1002	7	FSM	ENSMUSG00000062352.16	ENSMUST00000076260.12	1921	7	29	890	29	8	multi-exon	FALSE	canonical	3	216	junction_3	20.4728817924807	739	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGCCTTGGGGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	21336256	21320696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
66747	chr17	+	1849	3	Antisense	novelGene_ENSMUSG00000118589.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCGCTCCCGCCGAGGTTT	105	False	NA	NA	False	NA	NA	NA	35823669	35827663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35824081_35825369_35825921_35826776
66748	chr5	-	1793	6	FSM	ENSMUSG00000037379.8	ENSMUST00000046186.8	2045	6	250	2	-10	-2	multi-exon	FALSE	canonical	1	2	junction_2	1.4142135623731	7	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGGGTGACCTCCCA	NA	False	NA	NA	False	NA	NA	NA	33375549	33371272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_33371997_33372892_33373068_33373676_33373869_33373940_33374165_33374587_33374808_33375291
66749	chr13	+	928	3	Antisense	novelGene_ENSMUSG00000080770.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	2	42	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCACAGAAAAGAGATACAA	173	False	NA	NA	False	NA	NA	NA	22050019	22064765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_22050143_22062750_22062889_22064098
66750	chr8	+	1849	3	ISM	ENSMUSG00000031530.7	ENSMUST00000033930.5	2740	4	9164	0	9164	0	3prime_fragment	FALSE	canonical	3	23	junction_2	1	7	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGGCCTCCTAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	35283614	35287048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_35283747_35284277_35284498_35285551
66753	chr5	+	899	3	FSM	ENSMUSG00000029642.12	ENSMUST00000110557.5	1137	3	233	5	15	-5	multi-exon	FALSE	canonical	3	400	junction_1	26.5	88	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGGTGCTTTCCTCTTTTG	NA	False	NA	NA	False	NA	NA	NA	147014388	147048166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_147014504_147038038_147038114_147047457
66754	chr10	+	541	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	58	4	58	-4	multi-exon	FALSE	canonical	3	3631	junction_2	117.5	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGAATTGTGTCCTTAG	NA	False	NA	NA	False	NA	NA	NA	78261560	78263452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_78261692_78262760_78262863_78263144
66755	chr11	-	536	1	NIC	ENSMUSG00000002580.8	novel	747	4	NA	NA	736	-12	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTGTCAACTGGCGTG	566	False	NA	NA	False	NA	NA	NA	98329081	98328545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_98328500_98329100
66756	chr17	+	1392	3	FSM	ENSMUSG00000044279.16	ENSMUST00000163763.2	868	3	-33	-491	-17	0	multi-exon	FALSE	canonical	3	202	junction_2	10.5	120	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1561	False	NA	NA	False	NA	NA	NA	57369265	57372918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57369767_57370636_57370699_57372089
66757	chr19	-	1180	9	NNC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	454.072388915027	3	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCTCATTCTGCTCAT	5829	False	NA	NA	False	NA	NA	NA	46327092	46318980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46319262_46319432_46319553_46319728_46319902_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
66758	chr14	-	1349	1	ISM	ENSMUSG00000021796.16	ENSMUST00000049005.15	5956	13	90258	347	48127	-347	mono-exon	FALSE	NA	NA	NA	NA	NA	88	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTATTTTAGTATACTTCA	NA	False	NA	NA	False	NA	NA	NA	34134386	34133037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_34133000_34134400
66759	chr8	+	1243	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	0	-565	0	-2	multi-exon	FALSE	canonical	0	0	junction_1	13	258	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTAGATGTGGTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	106427779	106430120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106427919_106428805_106429029_106429239
66760	chr10	+	857	4	NNC	ENSMUSG00000003072.16	novel	931	4	NA	NA	-15	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1121.99980194096	1	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATTAAACACCAGGAACCA	4485	False	NA	NA	False	NA	NA	NA	79978188	79981626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79978441_79979665_79979816_79981052_79981142_79981260
66761	chr17	-	1942	4	FSM	ENSMUSG00000007021.6	ENSMUST00000007236.5	1965	4	24	-1	24	1	multi-exon	FALSE	canonical	3	8	junction_2	5.18544972870135	22	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGTCCCCTGGACTTAT	NA	False	NA	NA	False	NA	NA	NA	24908905	24904064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24905415_24905492_24905636_24906476_24906715_24908694
66762	ERCC-00136	+	1025	1	FSM	ERCC-00136A	EF011063	1025	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	375	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00136_+_0_1000
66763	chr14	-	1475	10	NNC	ENSMUSG00000022177.10	novel	1587	10	NA	NA	21	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	142.108722071831	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTAGTATTGTGCCTTAG	NA	False	NA	NA	False	NA	NA	NA	54791797	54779260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791703
66764	chr2	-	1083	2	NIC	ENSMUSG00000036504.7	novel	937	3	NA	NA	-4	0	intron_retention	FALSE	canonical	3	774	junction_1	0	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5542	False	NA	NA	False	NA	NA	NA	25464894	25463441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25464325_25464694
66765	chr11	-	1181	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	-17	-3	-17	3	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	1522	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGCTCCACTTTGATTT	NA	False	NA	NA	False	NA	NA	NA	72106435	72102546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
66766	chr16	+	1796	1	FSM	ENSMUSG00000046546.4	ENSMUST00000059078.4	3075	1	1192	87	1192	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	161	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTATTTTTTTGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	30419732	30421528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_30419700_30421500
66767	chr15	+	707	6	NIC	ENSMUSG00000022338.9	novel	767	6	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	35	junction_2	410.911864029259	96	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTTTCAATTTTTTTAT	9639	False	NA	NA	False	NA	NA	NA	44291510	44299259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_44291639_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
66768	chr9	-	1127	6	NNC	ENSMUSG00000032040.16	novel	1274	6	NA	NA	4753	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	315.701377887395	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGACTGATGGTGTAG	NA	False	NA	NA	False	NA	NA	NA	35082536	35035711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35036141_35037206_35037370_35037602_35037714_35040756_35040871_35047639_35047786_35082372
66770	chr5	-	565	1	ISM	ENSMUSG00000090086.8	ENSMUST00000159072.2	957	3	3726	96	3726	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCGGGAACTCCGTCAAT	NA	False	NA	NA	False	NA	NA	NA	123272446	123271881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_123271900_123272400
66771	chr10	-	1527	4	FSM	ENSMUSG00000087177.8	ENSMUST00000133302.8	438	4	196	-1285	9	1	multi-exon	FALSE	canonical	2	2	junction_2	8.65383665716478	22	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTGTTTTTTCAGCATA	5859	False	NA	NA	False	NA	NA	NA	39607801	39497408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_39498724_39508945_39509013_39557468_39557546_39607733
66772	chr5	-	766	1	Antisense	novelGene_ENSMUSG00000048439.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTATATTAAAAAATGAGAT	1030	False	NA	NA	False	NA	NA	NA	24372920	24372154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_24372200_24372900
66773	chr14	+	1267	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	57	0	-37	0	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	126	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	594	False	NA	NA	False	NA	NA	NA	47069638	47091650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
66774	chr1	+	584	1	Intergenic	novelGene_501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGAGTCTCTCGGTCCTT	4667	False	NA	NA	False	NA	NA	NA	190916536	190917120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_190916500_190917100
66777	chr7	-	750	2	NNC	ENSMUSG00000087598.10	novel	2895	2	NA	NA	977	4628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGATGCACTAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	23906519	23888743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_23888776_23905801
66778	chr10	+	778	1	Intergenic	novelGene_3447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTGTTAGCCTTCAGAA	NA	False	NA	NA	False	NA	NA	NA	61579416	61580194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_61579400_61580200
66779	chr11	+	1414	10	ISM	ENSMUSG00000006575.15	ENSMUST00000107102.8	1837	11	4205	6	-256	-6	3prime_fragment	FALSE	canonical	3	49	junction_9	60.3884544602589	50	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAACCTTGGGGAGACAG	3227	False	NA	NA	False	NA	NA	NA	102288433	102292574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292214
66780	chr6	-	1280	2	Antisense	novelGene_ENSMUSG00000042097.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCGCATTGTCTCAGCAGA	NA	False	NA	NA	False	NA	NA	NA	117849699	117847930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_117848512_117849000
66783	chr14	-	1123	4	NNC	ENSMUSG00000021811.8	novel	1631	5	NA	NA	-13	-229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.852784637795	9	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAAGGTCTGGTGGATT	NA	False	NA	NA	False	NA	NA	NA	20438957	20434934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20435409_20438057_20438280_20438367_20438509_20438671
66785	chr7	+	1961	6	FSM	ENSMUSG00000058028.15	ENSMUST00000072662.12	1980	6	13	6	-4	-6	multi-exon	FALSE	canonical	2	4	junction_1	2.49799919935936	31	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCTATTCATTGATTGA	3093	False	NA	NA	False	NA	NA	NA	6225289	6242416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6225336_6227584_6227759_6233070_6233538_6234335_6234537_6236813_6236968_6241497
66787	chr8	-	878	4	ISM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	-12	5634	-12	-5634	5prime_fragment	FALSE	canonical	3	623	junction_1	21.7613316585993	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAAAGAATGCCTGCTGA	NA	False	NA	NA	False	NA	NA	NA	23727687	23722265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_23722735_23724769_23724857_23726995_23727116_23727485
66788	chr5	+	2968	2	NNC	ENSMUSG00000002748.8	novel	4406	2	NA	NA	-123	-3042	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTACTTCCAGAGTATTCT	4312	False	NA	NA	False	NA	NA	NA	135234609	135237672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135236863_135236957
66789	chrX	+	2228	1	Antisense	novelGene_ENSMUSG00000016534.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTAATGCTGGCTATTA	2574	False	NA	NA	False	NA	NA	NA	37516997	37519225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_37517000_37519200
66790	chr4	+	1028	1	ISM	ENSMUSG00000006586.16	ENSMUST00000006761.10	5783	11	148157	1029	2373	-1008	mono-exon	FALSE	NA	NA	NA	NA	NA	8	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TACAAAAAAAAAAAAAATCC	1512	False	NA	NA	False	NA	NA	NA	13891592	13892620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_13891600_13892600
66791	chr14	+	1471	3	NNC	ENSMUSG00000090691.4	novel	2053	7	NA	NA	-125	-9033	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2	17	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGACAGAATGTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	15579685	15592238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_15579954_15584666_15584818_15591186
66792	chr18	-	2458	17	NNC	ENSMUSG00000024354.14	novel	3026	15	NA	NA	-2635	-739	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	2.25	10	14	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCCTGAATTCCAATGCC	NA	False	NA	NA	False	NA	NA	NA	35762932	35748395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35748741_35752440_35752706_35754819_35754916_35755339_35755484_35755564_35755695_35755911_35756018_35756503_35756652_35757123_35757281_35757480_35757602_35757734_35757917_35758052_35758121_35758240_35758330_35758860_35759019_35759411_35759547_35760154_35760217_35760630_35760694_35762743
66793	chr4	-	1003	4	Antisense	novelGene_ENSMUSG00000028282.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCACCAATCGCAGCTCA	NA	False	NA	NA	False	NA	NA	NA	32631860	32615438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_32615490_32624078_32624164_32630174_32630244_32631062
66795	chr12	-	1109	6	NNC	ENSMUSG00000021094.11	novel	1118	6	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	46.0721173813403	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTTGTACAAGAGC	NA	False	NA	NA	False	NA	NA	NA	72711567	72697183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72706113_72706271_72711402
66796	chr8	-	2029	3	NNC	ENSMUSG00000110594.2	novel	527	2	NA	NA	70	6194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6	27	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTGCTCAAGCCCTGTA	NA	False	NA	NA	False	NA	NA	NA	69454265	69417602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_69418551_69423172_69424161_69454172
66798	chr15	+	1968	2	FSM	ENSMUSG00000115971.2	ENSMUST00000230701.2	2556	2	75	513	75	-513	multi-exon	FALSE	canonical	1	1	junction_1	0	8	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGACAATGCCACTATTC	NA	False	NA	NA	False	NA	NA	NA	79727438	79730451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79727458_79728502
66799	chr4	+	1398	11	NNC	ENSMUSG00000028252.21	novel	1406	12	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.427079404979	1	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAACTTTTAGTTTTCT	-18	True	NA	NA	False	NA	NA	NA	21727741	21747955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21727911_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740681_21742612_21742705_21743246_21743309_21746349_21746430_21746655_21746775_21747482
66802	chr8	+	247	1	Intergenic	novelGene_1580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGCTCGCTGGCGTGGA	NA	False	NA	NA	False	NA	NA	NA	15569784	15570031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_15569800_15570000
66804	chr17	-	460	1	ISM	ENSMUSG00000008482.10	ENSMUST00000008626.10	1195	4	1393	372	1342	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTGGCCCACCTCACACC	7596	False	NA	NA	False	NA	NA	NA	24935644	24935184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24935200_24935600
66805	chr13	+	831	3	Antisense	novelGene_ENSMUSG00000021464.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_2	3	6	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACATATCACAAACTGAC	NA	False	NA	NA	False	NA	NA	NA	53338490	53340233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_53338633_53339455_53339592_53339680
66806	chr13	+	623	1	Intergenic	novelGene_1371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAATGGACTTATCAGCTC	NA	False	NA	NA	False	NA	NA	NA	53340351	53340974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_53340400_53341000
66809	chr5	+	1932	11	ISM	ENSMUSG00000000600.16	ENSMUST00000199845.5	4293	16	40	18828	34	2504	5prime_fragment	FALSE	canonical	3	92	junction_1	41.4482810258761	7	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTATTAAATGTAAAATTCA	8025	False	NA	NA	False	NA	NA	NA	3853223	3872456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086
66810	chr12	-	1328	1	Antisense	novelGene_ENSMUSG00000035933.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGCCGGGTTGATGACG	7674	False	NA	NA	False	NA	NA	NA	31706211	31704883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_31704900_31706200
66812	chr17	-	713	2	Genic_Genomic	ENSMUSG00000068141.6	novel	720	1	NA	NA	-17	55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCATAATGGGATTTTT	NA	False	NA	NA	False	NA	NA	NA	3095025	3094233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_3094351_3094429
66813	chr19	+	462	3	NNC	ENSMUSG00000056201.9	novel	771	3	NA	NA	5	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3173	371	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTTTGGGTTTGGGATT	NA	False	NA	NA	False	NA	NA	NA	5540548	5544061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542735_5543891
66814	chr6	+	3635	18	FSM	ENSMUSG00000029869.8	ENSMUST00000114732.3	3762	18	62	65	62	-63	multi-exon	TRUE	canonical	2	8	junction_2	4.47522978861417	4	101	11	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCAAATCCTGCTCTTCC	390	False	NA	NA	False	NA	NA	NA	41582477	41597378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_41582755_41589577_41589650_41590148_41590353_41590685_41590751_41591012_41591776_41592422_41592579_41592850_41593202_41593393_41593519_41593681_41593845_41594197_41594313_41594560_41594614_41594780_41594901_41595001_41595250_41595504_41595679_41596164_41596315_41596540_41596735_41596856_41597013_41597129
66815	chr10	+	176	1	Intergenic	novelGene_3446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	214	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTAAAAGAATGTCAGA	NA	False	NA	NA	False	NA	NA	NA	60969021	60969197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_60969000_60969200
66816	chr14	-	1582	8	FSM	ENSMUSG00000037833.15	ENSMUST00000096000.4	1597	8	297	-282	297	282	multi-exon	FALSE	canonical	3	14	junction_2	5.69998209807429	18	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAACCCAAAGCAAATCCAG	NA	False	NA	NA	False	NA	NA	NA	40614926	40537542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_40537918_40542571_40542793_40562181_40562307_40564330_40564548_40582548_40582697_40594486_40594635_40596036_40596197_40614738
66817	chr3	+	1924	10	ISM	ENSMUSG00000109293.2	ENSMUST00000208216.2	2285	16	5264	-7	5264	7	3prime_fragment	FALSE	canonical	1	1	junction_3	4.54606056566195	4	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGACCCCTCCCCAGCCT	2638	False	NA	NA	False	NA	NA	NA	89274545	89284863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89275242_89275397_89275556_89276011_89276177_89277734_89277903_89278006_89278108_89278839_89278971_89279954_89280083_89280529_89280624_89280731_89280888_89284736
66818	chr1	-	976	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	-21	2999	-21	-2999	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	212	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATCAATTATAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	57416724	57401379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_57401923_57414406_57414679_57416563
66819	chrX	-	969	4	FSM	ENSMUSG00000079628.4	ENSMUST00000115166.3	979	4	4	6	4	-6	multi-exon	FALSE	canonical	3	17	junction_1	1.24721912892465	146	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGACTCATGTGTCTTTT	6372	False	NA	NA	False	NA	NA	NA	36832976	36828158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36828390_36829677_36829724_36832090_36832497_36832690
66820	chr11	+	1515	5	NNC	ENSMUSG00000038217.14	novel	1153	5	NA	NA	-31	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.1220234720107	101	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCAGTCTCTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	75358873	75361717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360926_75361326
66821	chr3	-	800	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	83.6449174918729	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	84063084	83995239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84062968
66822	chr6	+	1173	3	FSM	ENSMUSG00000059689.16	ENSMUST00000223041.2	1128	3	-44	-1	29	0	multi-exon	FALSE	canonical	2	5	junction_2	10.5	248	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTATTTTTCATAATTT	NA	False	NA	NA	False	NA	NA	NA	117818170	117822917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117818230_117820213_117820354_117821943
66823	chr9	-	1720	5	ISM	ENSMUSG00000032589.15	ENSMUST00000124763.2	7496	8	5528	2535	5528	-2535	3prime_fragment	TRUE	canonical	3	14	junction_1	4.12310562561766	32	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGCAGTTGAGAAACTGG	3831	False	NA	NA	False	NA	NA	NA	107982084	107975756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107977097_107980388_107980482_107980862_107980918_107981142_107981275_107981984
66824	chr4	-	2355	11	NNC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	540	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	27.97927804644	1	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGCTCCATGGGCCTGAG	9121	False	NA	NA	False	NA	NA	NA	156318441	156313822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_156314720_156314961_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316827_156317115_156317203_156317680_156317903_156318048_156318171_156318255
66825	chr11	+	1926	1	Genic_Genomic	ENSMUSG00000085628.5	novel	NA	NA	NA	NA	2873	1665	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGTATATGGACCCATA	NA	False	NA	NA	False	NA	NA	NA	85128869	85130795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_85128900_85130800
66826	chr15	+	1267	1	ISM	ENSMUSG00000116165.2	ENSMUST00000089378.5	2001	2	4332	0	4332	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGTGTGTGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	78802450	78803717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78802400_78803700
66827	chr3	+	923	8	FSM	ENSMUSG00000004032.11	ENSMUST00000004134.11	945	8	0	22	0	-14	multi-exon	FALSE	canonical	3	47	junction_1	3.52252228741084	142	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAACAGCAGTTGCATT	NA	False	NA	NA	False	NA	NA	NA	107803136	107805980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
66828	chr10	-	1361	4	FSM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	-4	3	-4	-3	multi-exon	FALSE	canonical	2	12	junction_1	5.73488351136175	60	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCTGGGTCTAAATTTC	NA	False	NA	NA	False	NA	NA	NA	128133957	128132010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128132845_128132946_128133094_128133358_128133461_128133679
66829	chr11	+	1697	15	NNC	ENSMUSG00000059439.16	novel	2925	16	NA	NA	-3	-1165	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	33.5993804607606	1	70	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACAGTGACTACGGTGAT	3475	False	NA	NA	False	NA	NA	NA	85243989	85400652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_85244060_85245713_85245802_85250450_85250506_85256377_85256456_85261882_85261990_85286164_85286247_85306477_85306551_85342486_85342595_85348693_85348771_85356984_85357062_85361577_85361662_85367463_85367635_85373468_85373563_85386653_85386788_85400253
66830	chr10	-	1326	1	Intergenic	novelGene_3561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCCTCTCGTGCGTTCTC	NA	False	NA	NA	False	NA	NA	NA	126733949	126732623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_126732600_126733900
66831	chr5	-	1441	2	FSM	ENSMUSG00000051022.8	ENSMUST00000137142.2	763	2	83	-761	83	-69	multi-exon	FALSE	canonical	0	0	junction_1	0	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCTTTGTTTTCACCTC	NA	False	NA	NA	False	NA	NA	NA	39802506	39771350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_39772748_39802462
66832	chr15	-	1020	3	Intergenic	novelGene_3360	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	16	junction_1	0.5	113	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATGCAGGAATTGAGTT	1466	False	NA	NA	False	NA	NA	NA	97029747	97026309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97027102_97029108_97029265_97029675
66833	chr14	+	1228	7	FSM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	0	6	0	-6	multi-exon	TRUE	canonical	3	12	junction_4	6.83130051063973	86	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGCTGAGTGACGCCAG	NA	False	NA	NA	False	NA	NA	NA	52254321	52257245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_52254399_52254512_52254655_52255207_52255319_52255410_52255468_52255998_52256110_52256188_52256336_52256662
66837	chr5	-	1587	8	NNC	ENSMUSG00000005107.14	novel	3602	12	NA	NA	4023	550	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	4.7723694538543	2	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCCAGCACTCAAGGCC	NA	False	NA	NA	False	NA	NA	NA	38594149	38507875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_38508681_38520185_38520314_38537260_38537337_38539385_38539488_38549056_38549168_38556044_38556233_38593882_38594029_38594118
66839	chr11	+	1625	10	ISM	ENSMUSG00000006575.15	ENSMUST00000006750.8	2046	11	4205	4	-256	-4	3prime_fragment	FALSE	canonical	3	171	junction_6	29.8663690461362	77	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGGTTTCATCTGTTG	3227	False	NA	NA	False	NA	NA	NA	102288433	102293377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
66840	chr19	-	968	3	Antisense	novelGene_ENSMUSG00000067242.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACATTTGCTTTACATTG	NA	False	NA	NA	False	NA	NA	NA	38276188	38270589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38271297_38272318_38272557_38276165
66841	chr11	-	1107	2	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTATGCAGGAAATGGTAA	NA	False	NA	NA	False	NA	NA	NA	75656667	75642708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75642779_75655630
66842	chr5	+	1753	1	Intergenic	novelGene_815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	90	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACATGTCACCTCATGAC	NA	False	NA	NA	False	NA	NA	NA	110954178	110955931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110954200_110955900
66843	chr19	-	1721	4	FSM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	21	868	0	-4	multi-exon	FALSE	canonical	3	26	junction_3	29.8923996285938	160	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTAGGGTATGTGTGC	NA	False	NA	NA	False	NA	NA	NA	4843908	4835188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843699
66844	chr19	+	1107	1	FSM	ENSMUSG00000074925.5	ENSMUST00000067077.2	1756	1	-297	946	-297	-946	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAATGTTAGTTCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	23700345	23701452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_23700300_23701500
66845	chr19	+	717	1	ISM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	43479	44	7629	-44	mono-exon	FALSE	NA	NA	NA	NA	NA	12	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATATAGAGCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	23708271	23708988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_23708300_23709000
66846	chr17	-	912	2	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	-34	0	intron_retention	FALSE	canonical	3	29	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	NA	False	NA	NA	NA	79202563	79192325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79192646_79201971
66848	chr8	+	1770	6	Antisense	novelGene_ENSMUSG00000031604.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	119	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAGGTGCAGCGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	65171184	65186581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_65172220_65173385_65173530_65175497_65175621_65176617_65176773_65180667_65180948_65186548
66849	chr17	-	1748	11	NNC	ENSMUSG00000025733.18	novel	3189	19	NA	NA	-22	-393	intron_retention	FALSE	canonical	0	0	junction_10	46.4014008409229	1	66	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTGGGGTGAGAATTAT	6053	False	NA	NA	False	NA	NA	NA	26063459	26059420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26059543_26059624_26060111_26060335_26060457_26060532_26061066_26061153_26061263_26061339_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063283_26063369
66850	chr2	-	2986	22	NNC	ENSMUSG00000037110.21	novel	3730	16	NA	NA	-28	1274	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	9.102589898328	3	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAACAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	146353859	146245480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_146245609_146246782_146246960_146248261_146248353_146252092_146252191_146253965_146254080_146254653_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737_146273887_146276699_146276838_146277758_146277927_146285703_146285932_146289195_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040_146327152_146353713
66851	chr2	+	1195	1	Intergenic	novelGene_2842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGTTGAGGGTACAACT	NA	False	NA	NA	False	NA	NA	NA	176759406	176760601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_176759400_176760600
66855	chr19	+	1418	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	85	25	72	-25	multi-exon	FALSE	canonical	3	164	junction_1	0	81	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTGTGTCTTGAGTGTT	332	False	NA	NA	False	NA	NA	NA	5475256	5477316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5475337_5475978
66856	chr17	+	3247	7	ISM	ENSMUSG00000032855.7	ENSMUST00000035565.5	14164	46	24057	17636	-2537	-1563	internal_fragment	FALSE	canonical	3	10	junction_2	1.73205080756888	7	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAACATCACGGAGACCC	NA	False	NA	NA	False	NA	NA	NA	24792980	24797846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24795218_24795411_24795562_24796492_24796637_24796723_24797004_24797069_24797284_24797352_24797513_24797784
66857	chr15	+	1841	2	NNC	ENSMUSG00000116518.2	novel	440	2	NA	NA	17	43	intron_retention	TRUE	non_canonical	0	0	junction_1	0	5	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCTTTCCTACTAGACCAC	NA	False	NA	NA	False	NA	NA	NA	99773476	99775519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99775276_99775477
66858	chr8	+	1525	1	Intergenic	novelGene_1775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTCTTCTGCCCTGAAG	NA	False	NA	NA	False	NA	NA	NA	120642793	120644318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_120642800_120644300
66859	chr7	-	620	5	NIC	ENSMUSG00000041571.11	novel	736	6	NA	NA	57	-5	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	870.814848288659	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGGGAGATGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	15656270	15651137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_15651465_15653772_15653872_15653967_15654043_15654373_15654399_15656176
66860	chr6	+	1786	10	ISM	ENSMUSG00000000811.15	ENSMUST00000000828.14	2836	16	17552	85	17552	-85	3prime_fragment	FALSE	canonical	3	51	junction_4	9.35447341326631	28	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGATCTAATTCGTT	NA	False	NA	NA	False	NA	NA	NA	89638521	89652426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_89638584_89640058_89640175_89641359_89641586_89642681_89642775_89646286_89646364_89646799_89646957_89649152_89649261_89649949_89650046_89651042_89651178_89651710
66861	chr17	-	1684	3	ISM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	7840	13	7799	-13	3prime_fragment	FALSE	canonical	3	299	junction_2	12.5	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAAAAGCAAGCAGCTG	NA	False	NA	NA	False	NA	NA	NA	87565492	87562098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_87563486_87564574_87564735_87565355
66862	chr8	+	1747	6	FSM	ENSMUSG00000039328.12	ENSMUST00000217278.2	1726	6	3	-24	2	24	multi-exon	FALSE	canonical	2	5	junction_2	3.55527776692624	41	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTAATCAAATTTTTGGC	NA	False	NA	NA	False	NA	NA	NA	31601860	31619685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_31602201_31608458_31608616_31614879_31614926_31615193_31615236_31618279_31618363_31618606
66864	chr12	-	2022	1	NIC	ENSMUSG00000051166.11	novel	9482	41	NA	NA	1530	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATCGCATCAAGGAAGT	NA	False	NA	NA	False	NA	NA	NA	98757430	98755408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_98755400_98757400
66865	chr2	+	1106	10	FSM	ENSMUSG00000027099.10	ENSMUST00000028511.8	2950	10	149	1695	122	232	multi-exon	FALSE	canonical	3	767	junction_7	57.1160827926797	191	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTTTCATTTACTT	NA	False	NA	NA	False	NA	NA	NA	74656295	74707080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_74656388_74677581_74677630_74678642_74678690_74689748_74689822_74697214_74697292_74698663_74698757_74699226_74699266_74699647_74699774_74700751_74700829_74706646
66866	chr17	-	1216	6	FSM	ENSMUSG00000073406.11	ENSMUST00000173080.10	1138	6	-25	-53	-25	-21	multi-exon	FALSE	canonical	3	116	junction_4	160.992670640623	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCAACATGGAGAACCTTC	NA	False	NA	NA	False	NA	NA	NA	36395140	36391027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394858_36395051
66867	chr9	+	1131	9	NNC	ENSMUSG00000002825.9	novel	1316	10	NA	NA	6	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	383.918529769012	1	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTACTACTTTTTGTTTT	2383	False	NA	NA	False	NA	NA	NA	21323146	21331548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21323268_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329714_21330586_21330663_21330734_21330891_21331307
66868	chr8	-	1260	3	Antisense	novelGene_ENSMUSG00002075592.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	156	junction_2	25.5	688	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGTATTCCTGAGTCTAT	9365	False	NA	NA	False	NA	NA	NA	111248773	111221341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_111222416_111227500_111227611_111248697
66870	chr12	-	1186	3	ISM	ENSMUSG00000021200.15	ENSMUST00000127447.2	2399	6	10030	-1	10030	1	3prime_fragment	FALSE	canonical	3	27	junction_2	7	257	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTCTGCCCTGTGATTC	NA	False	NA	NA	False	NA	NA	NA	103291813	103287403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_103287934_103290021_103290176_103291311
66872	chr11	-	1963	10	NIC	ENSMUSG00000041189.10	novel	2155	11	NA	NA	-2	-16	combination_of_known_junctions	FALSE	canonical	2	2	junction_9	7.09372875533883	179	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAGAAAATGATTAATCAT	-2	True	NA	NA	False	NA	NA	NA	69686733	69674877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684975_69685086_69685794_69685840_69686647
66873	chr13	-	1306	6	FSM	ENSMUSG00000034891.14	ENSMUST00000036825.14	1351	6	42	3	42	-3	multi-exon	FALSE	canonical	0	0	junction_2	35.7636687156114	216	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGGCGCCGCCTAGGC	NA	False	NA	NA	False	NA	NA	NA	54914366	54906675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54914117
66876	chr11	+	1281	2	FSM	ENSMUSG00000047040.10	ENSMUST00000062172.6	1242	2	-34	-5	-34	0	multi-exon	FALSE	canonical	3	7	junction_1	0	86	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGGTCTTATTTATACAC	NA	False	NA	NA	False	NA	NA	NA	96820185	96826474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_96820336_96825343
66877	chr4	+	2599	1	Genic_Genomic	ENSMUSG00000084910.2	novel	NA	NA	NA	NA	-53	-11459	mono-exon	FALSE	NA	NA	NA	NA	NA	44	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCTATTTTGTCATCTT	NA	False	NA	NA	False	NA	NA	NA	72119531	72122130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_72119500_72122100
66879	chr16	+	598	2	ISM	ENSMUSG00000022543.10	ENSMUST00000231077.2	495	3	191	572	191	-572	5prime_fragment	FALSE	canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGCCACATGGTATGGT	NA	False	NA	NA	False	NA	NA	NA	4782531	4783851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_4782635_4783356
66881	chr16	+	901	4	ISM	ENSMUSG00000022543.10	ENSMUST00000229669.2	1460	8	8517	-304	7800	304	3prime_fragment	FALSE	canonical	0	0	junction_3	1.24721912892465	2	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAGCAAAACCAGAAATTT	NA	False	NA	NA	False	NA	NA	NA	4791918	4795906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_4792044_4794006_4794154_4794393_4794478_4795361
66883	chr8	+	785	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	56.0556865982391	1574	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	251	False	NA	NA	False	NA	NA	NA	106052985	106055689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
66885	chr6	-	930	2	FSM	ENSMUSG00000072772.4	ENSMUST00000140423.2	1656	2	-2	728	-2	-727	multi-exon	FALSE	canonical	3	950	junction_1	0	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGTTGTTTATTAATTT	9250	False	NA	NA	False	NA	NA	NA	124718030	124716876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124717659_124717882
66886	chr17	-	1816	7	NIC	ENSMUSG00000061046.10	novel	1453	8	NA	NA	2	-9	intron_retention	FALSE	canonical	3	40	junction_2	8.90692614392492	8	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACACAGTGGATCCTTC	4346	False	NA	NA	False	NA	NA	NA	26004554	26001784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
66887	chr1	+	628	1	Intergenic	novelGene_469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGATCAGAAGCTGATTAA	NA	False	NA	NA	False	NA	NA	NA	152885478	152886106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_152885500_152886100
66888	chr8	-	1097	8	NNC	ENSMUSG00000031546.7	novel	1349	8	NA	NA	-19	-251	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	225.961708874648	2	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACTCAGCAAATAAATCAA	NA	False	NA	NA	False	NA	NA	NA	23727694	23716882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727110_23727499
66889	chr19	+	2895	1	NIC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	-19	-1173	mono-exon	FALSE	NA	NA	NA	NA	NA	5	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTAGACACACCAGAAGAG	4156	False	NA	NA	False	NA	NA	NA	41900457	41903352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41900500_41903400
66890	chrX	-	1785	9	NNC	ENSMUSG00000087396.8	novel	3369	9	NA	NA	4304	-571	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.61535599791501	1	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATCGAATTACCTTTAG	NA	False	NA	NA	False	NA	NA	NA	74804001	74770545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74771125_74774625_74774789_74775131_74775206_74779708_74779862_74785421_74785585_74790282_74790446_74795130_74795294_74798971_74799135_74803837
66892	chr7	+	1845	3	Antisense	novelGene_ENSMUSG00000006019.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGCGCCTGCGCACGCT	NA	False	NA	NA	False	NA	NA	NA	15949613	15955962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_15950461_15951917_15952876_15955922
66893	chr17	-	2755	10	ISM	ENSMUSG00000024077.16	ENSMUST00000024881.14	2967	16	18967	-604	14502	604	3prime_fragment	FALSE	canonical	3	31	junction_7	5.55333288871102	5	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCCATTAAACTAATTCCA	8169	False	NA	NA	False	NA	NA	NA	78977279	78961420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_78963089_78963177_78963265_78964336_78964445_78965312_78965454_78967472_78967641_78969190_78969313_78970489_78970538_78972047_78972224_78974550_78974688_78977179
66894	chr4	-	2337	12	NNC	ENSMUSG00000040387.17	novel	7143	11	NA	NA	65	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.36486464060395	13	55	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAATAATTTTCTA	74	False	NA	NA	False	NA	NA	NA	24851021	24617261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_24617547_24618006_24618047_24626896_24626992_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682236_24708952_24709052_24743857_24743966_24792616_24792798_24800805_24800891_24850737
66895	chr8	-	555	5	NNC	ENSMUSG00000045128.10	novel	795	4	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	12204.1210048082	20	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	NA	False	NA	NA	NA	71350055	71348022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71348152_71348243_71348312_71348564_71348690_71348776_71348957_71350002
66896	chr7	-	385	5	FSM	ENSMUSG00000061787.16	ENSMUST00000208054.2	383	5	0	-2	0	0	multi-exon	FALSE	canonical	3	224	junction_3	5279.89450652189	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	80994975	80992480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994686_80994757_80994949
66897	chr13	+	2624	15	NNC	ENSMUSG00000042102.8	novel	2992	16	NA	NA	9151	-205	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	3.06394436993246	23	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCTAAGACAAACACTTT	NA	False	NA	NA	False	NA	NA	NA	93820091	93889136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_93820198_93823435_93823535_93825032_93825198_93828379_93828585_93840294_93840544_93843138_93843338_93845180_93845351_93845689_93845844_93847800_93847967_93848553_93848685_93851965_93852184_93854062_93854221_93857066_93857127_93880800_93880936_93888727
66898	chr11	-	497	6	ISM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	125	636	-1	-8	5prime_fragment	FALSE	canonical	3	730	junction_2	42.6614580154031	117	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGGACAAGTATAGCCAT	NA	False	NA	NA	False	NA	NA	NA	70560117	70555232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
66900	chr17	+	1015	1	Intergenic	novelGene_105	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTGCATACTATTTGAG	NA	False	NA	NA	False	NA	NA	NA	25502578	25503593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_25502600_25503600
66901	chr4	+	1025	6	Antisense	novelGene_ENSMUSG00000028822.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAACAGCCACAGGCAA	NA	False	NA	NA	False	NA	NA	NA	134625165	134642265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_134625785_134628009_134628074_134630961_134631053_134632653_134632726_134636923_134637037_134642199
66903	chr7	-	1046	5	FSM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	-30	0	5	0	multi-exon	FALSE	canonical	3	15	junction_3	32.1820990614348	140	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	NA	NA	NA	127534681	127531809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533681_127533800_127534618
66904	chrM	+	687	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	56	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	-1	True	NA	NA	False	NA	NA	NA	7012	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7000_7700
66905	chr1	+	3050	1	Intergenic	novelGene_401	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTTCTGGTGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	87324262	87327312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_87324300_87327300
66906	chr17	+	998	5	NNC	ENSMUSG00000040771.15	novel	1324	6	NA	NA	57	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	427.836709504923	2	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTTTGCACACATGAACG	NA	False	NA	NA	False	NA	NA	NA	48717176	48724285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_48717284_48718291_48718437_48721253_48721313_48722248_48722362_48723711
66907	chr3	-	789	6	NNC	ENSMUSG00000004896.17	novel	3157	7	NA	NA	1858	2793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTCCTAGCAAAAGAGGAG	1591	False	NA	NA	False	NA	NA	NA	87830724	87827114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_87827135_87829122_87829354_87829435_87829532_87829692_87829801_87830246_87830370_87830513
66908	chr7	-	744	1	ISM	ENSMUSG00000070808.5	ENSMUST00000210713.2	6623	8	15987	1003	6307	-413	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACAATTCTTGCCTAAG	NA	False	NA	NA	False	NA	NA	NA	15706343	15705599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_15705600_15706300
66909	chr7	-	858	1	ISM	ENSMUSG00000070808.5	ENSMUST00000210713.2	6623	8	16869	7	7189	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTACTCAGGCCCCCT	NA	False	NA	NA	False	NA	NA	NA	15705461	15704603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_15704600_15705500
66910	chr2	+	1482	7	NIC	ENSMUSG00000027333.19	novel	1617	8	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	1	3	junction_6	64.0910810227653	19	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCACGCTCCTTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	131333882	131367083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131362567_131362974_131363092_131366662
66911	chr2	+	721	4	NIC	ENSMUSG00000016344.15	novel	1160	5	NA	NA	-4	2	combination_of_known_splicesites	FALSE	canonical	3	42	junction_2	354.595544247245	89	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGTATGTTTGAAACAT	3432	False	NA	NA	False	NA	NA	NA	180829135	180830299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180829248_180829342_180829530_180829796_180829894_180829974
66912	chr2	-	890	3	FSM	ENSMUSG00000026966.7	ENSMUST00000028342.7	862	3	-28	0	-6	0	multi-exon	FALSE	canonical	3	707	junction_2	68	2591	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	NA	False	NA	NA	NA	25162456	25161050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25161594_25161940_25162141_25162309
66913	chr7	+	584	6	NNC	ENSMUSG00000030611.11	novel	1056	6	NA	NA	-11	-207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	170.618170192978	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTGACTCCTGTGGATC	NA	False	NA	NA	False	NA	NA	NA	78433091	78442530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_78433172_78433320_78433429_78438422_78438522_78440384_78440515_78441621_78441688_78442429
66917	chr1	+	1337	9	NIC	ENSMUSG00000073664.12	novel	15731	55	NA	NA	4	-5166	combination_of_known_splicesites	TRUE	canonical	2	2	junction_7	7.72071078334113	34	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTATTATTATTATTGT	NA	False	NA	NA	False	NA	NA	NA	60219761	60263891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_60219845_60220621_60220914_60233662_60233755_60234173_60234336_60239263_60239346_60240022_60240151_60245492_60245576_60261225_60261533_60263783
66918	chr9	+	1189	7	NIC	ENSMUSG00000035443.11	novel	918	8	NA	NA	9	-49	intron_retention	FALSE	canonical	3	72	junction_3	226.081597855484	1	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTGTGCACGGATGGTT	NA	False	NA	NA	False	NA	NA	NA	26911032	26918577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_26911062_26911246_26911353_26914892_26915061_26916441_26916511_26916852_26916946_26917647_26918248_26918453
66919	chr13	-	578	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	-12	5	5	-5	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGGTACACTTGGCAGT	NA	False	NA	NA	False	NA	NA	NA	114524611	114425188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
66920	chr9	-	2093	10	ISM	ENSMUSG00000047766.16	ENSMUST00000114034.9	2779	16	42	26994	42	-3953	5prime_fragment	FALSE	canonical	1	5	junction_4	3.70518488900735	2	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGCACATGATTCTCTT	3577	False	NA	NA	False	NA	NA	NA	60595359	60521505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_60522461_60528851_60529000_60556762_60556825_60573571_60573716_60578577_60578645_60584362_60584567_60587351_60587455_60592317_60592406_60594421_60594479_60595094
66921	chr4	+	1542	13	NNC	ENSMUSG00000012126.17	novel	553	5	NA	NA	256	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	35.3084621585251	2	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGCTTCACAAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	133835915	133854086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_133836134_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
66922	chr15	+	1131	2	FSM	ENSMUSG00000056665.3	ENSMUST00000070923.3	1784	2	371	282	371	-282	multi-exon	FALSE	canonical	3	79	junction_1	0	67	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAGTTCTCAAGGCGCG	5011	False	NA	NA	False	NA	NA	NA	74593423	74596206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_74593657_74595308
66923	chr10	-	3400	1	NIC	ENSMUSG00000000374.9	novel	5047	23	NA	NA	7447	-1528	mono-exon	FALSE	NA	NA	NA	NA	NA	4	58	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCCCAGTTTGTTCTAG	8636	False	NA	NA	False	NA	NA	NA	78027486	78024086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_78024100_78027500
66924	chr14	+	637	3	NNC	ENSMUSG00000115483.2	novel	1188	2	NA	NA	-3269	-439	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	7	27	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGATCTTTCCTGTATC	NA	False	NA	NA	False	NA	NA	NA	43129223	43146636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_43129304_43132375_43132821_43146524
66928	chr7	+	2277	17	NNC	ENSMUSG00000039099.8	novel	2285	18	NA	NA	21	-5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	4.03451902337813	42	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGTGGGTGCGGTTCA	606	False	NA	NA	False	NA	NA	NA	79392931	79435693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79392986_79398829_79399168_79399712_79399906_79402195_79402261_79405680_79405760_79408157_79408274_79411207_79411247_79418106_79418192_79419088_79419261_79420725_79420797_79421264_79421352_79422148_79422269_79423100_79423315_79425259_79425324_79426377_79426535_79426860_79427054_79435463
66929	chr19	-	1995	1	Intergenic	novelGene_1215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGAGAAGGTTAGGGG	NA	False	NA	NA	False	NA	NA	NA	17174974	17172979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_17173000_17175000
66931	chr10	-	1106	2	Intergenic	novelGene_3460	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	98	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATGACTTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	66810454	66805488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_66806523_66810382
66932	chr17	-	2294	10	NNC	ENSMUSG00000024096.18	novel	3811	10	NA	NA	187	97	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	219.609642460727	12	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTGTTAAAAATAACTAT	NA	False	NA	NA	False	NA	NA	NA	66191762	66156727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_66157191_66159129_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
66933	chr18	+	1701	5	FSM	ENSMUSG00000025421.16	ENSMUST00000097521.12	1704	5	-1	4	-1	-4	multi-exon	FALSE	canonical	0	0	junction_2	173.436587835439	7	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGACATGAAAATGCTATG	NA	False	NA	NA	False	NA	NA	NA	77031821	77049745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77048509
66934	chr7	+	608	5	NNC	ENSMUSG00000006333.15	novel	751	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6014.33381597663	4	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTTATTGGTGTGCCT	1309	False	NA	NA	False	NA	NA	NA	3707036	3709891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3707064_3707325_3707448_3707644_3707727_3708783_3708919_3709649
66935	chr13	+	3968	1	Intergenic	novelGene_1497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	119	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGCCTGCCTTTTAGAAA	NA	False	NA	NA	False	NA	NA	NA	89846373	89850341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_89846400_89850300
66936	chr6	-	1100	3	NNC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	-539	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.5	7	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCATTTGGTCTGTTTATG	9785	False	NA	NA	False	NA	NA	NA	38332077	38282225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38283112_38331303_38331470_38332029
66937	chr10	-	1371	7	FSM	ENSMUSG00000005355.10	ENSMUST00000005488.9	2336	7	104	861	104	-855	multi-exon	FALSE	canonical	2	2	junction_1	2.21108319357027	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAAAGGACTTGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	78554024	78548685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_78549276_78549823_78549928_78550081_78550232_78550768_78550995_78551094_78551245_78551653_78551721_78553940
66938	chr10	-	778	1	ISM	ENSMUSG00000005355.10	ENSMUST00000005488.9	2336	7	5493	33	4605	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCAGTAAACATCTGTCAA	NA	False	NA	NA	False	NA	NA	NA	78548635	78547857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_78547900_78548600
66939	chr4	-	2154	11	NNC	ENSMUSG00000040387.17	novel	7143	11	NA	NA	30	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.23882694814033	1	33	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAATAATTTTCTAA	-7	True	NA	NA	False	NA	NA	NA	24850901	24617260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_24617547_24618006_24618047_24626896_24626992_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682271_24743857_24743966_24792616_24792798_24800805_24800891_24850737
66942	chr12	-	950	7	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4855.71976870806	3	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGACTGACTTATTTA	NA	False	NA	NA	False	NA	NA	NA	65120718	65109213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65109515_65110448_65110550_65112510_65112579_65113415_65113552_65115771_65115884_65116724_65116827_65120588
66943	chr4	+	1281	9	ISM	ENSMUSG00000028825.8	ENSMUST00000030627.8	1514	10	11775	27	-3499	-27	3prime_fragment	FALSE	canonical	3	9	junction_1	6.25999201277446	90	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATTAAAGTTCTGGTCC	NA	False	NA	NA	False	NA	NA	NA	134603621	134623456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_134603813_134607200_134607352_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
66944	chr10	+	748	8	NNC	ENSMUSG00000061315.15	novel	885	8	NA	NA	10	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5633.78319622266	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTGTACTGTTTCTAT	4982	False	NA	NA	False	NA	NA	NA	127871513	127884449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882693_127883540_127883678_127883874_127883983_127884113_127884237_127884361
66945	chr9	-	1735	8	NNC	ENSMUSG00000104572.6	novel	1388	8	NA	NA	771	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	1.16057691494799	12	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAAGCACAGGCTAGTGA	NA	False	NA	NA	False	NA	NA	NA	109362341	109345466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109345642_109349339_109349465_109349763_109349943_109351418_109351639_109353379_109353539_109354905_109355116_109361544_109362097_109362226
66946	chr11	-	966	6	ISM	ENSMUSG00000057054.12	ENSMUST00000108542.8	1080	7	4217	6	4171	2	3prime_fragment	FALSE	canonical	1	2	junction_5	4.1182520563948	23	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTCTGTGCGAGGTAG	394	False	NA	NA	False	NA	NA	NA	70586764	70579192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689
66947	chr9	-	1640	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	331	2	30	-2	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGTTTGAACCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	35481363	35472117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
66948	chr7	+	2345	1	Antisense	novelGene_ENSMUSG00000108676.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCTGAAACCCGGTAGTA	NA	False	NA	NA	False	NA	NA	NA	125823707	125826052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_125823700_125826100
66949	chr5	-	1260	4	NNC	ENSMUSG00000029524.17	novel	1645	5	NA	NA	-88	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	17.9071680247511	20	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAATAGCATAACAAATGT	NA	False	NA	NA	False	NA	NA	NA	115621003	115616081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115616468_115617660_115617872_115618242_115618585_115620682
66950	chr10	+	1692	1	Genic_Genomic	ENSMUSG00000073427.5	novel	NA	NA	NA	NA	-6	-23696	mono-exon	FALSE	NA	NA	NA	NA	NA	19	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACATATTTTCTATTATC	NA	False	NA	NA	False	NA	NA	NA	82190082	82191774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_82190100_82191800
66951	chr1	-	1848	4	NNC	ENSMUSG00000044816.11	novel	594	7	NA	NA	12893	-8	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	12.1197726417986	21	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTATGCTTTTTGTT	9668	False	NA	NA	False	NA	NA	NA	65149380	65146479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65147965_65148620_65148736_65149035_65149124_65149220
66952	chr4	+	1156	4	ISM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	72	12	-57	-5	intron_retention	FALSE	canonical	3	280	junction_1	77.5857948052062	43	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTGAAACATGTTTTGG	67	False	NA	NA	False	NA	NA	NA	3938985	3943516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720
66954	chr16	+	603	2	ISM	ENSMUSG00000034206.16	ENSMUST00000182163.2	1206	5	-40	4166	-11	-4166	5prime_fragment	FALSE	canonical	3	42	junction_1	0	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGGAAACAAGGACATTTG	3737	False	NA	NA	False	NA	NA	NA	36832136	36833786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_36832422_36833468
66956	chr16	+	881	6	NNC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	332.925457122161	3	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATGTTATCTTTCATGT	7080	False	NA	NA	False	NA	NA	NA	38379069	38411666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38379125_38384476_38384659_38393415_38393639_38396104_38396189_38402331_38402406_38411403
66958	chr18	+	3060	17	NNC	ENSMUSG00000097610.3	novel	2364	5	NA	NA	-232102	-10475	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	21	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGGCGCCGGGACCCACC	5825	False	NA	NA	False	NA	NA	NA	44562629	44795068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_44563137_44564404_44564528_44575979_44576076_44578795_44579003_44582270_44582507_44592865_44593053_44596907_44597009_44601447_44601589_44606690_44606842_44608201_44608296_44609303_44609444_44624188_44624398_44626448_44626613_44643163_44643306_44652582_44652727_44667253_44667370_44794766
66959	chr10	-	1703	1	Antisense	novelGene_ENSMUSG00000078427.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGTTGGAACTGAAGAA	9904	False	NA	NA	False	NA	NA	NA	128686361	128684658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128684700_128686400
66960	chr3	+	1434	4	FSM	ENSMUSG00000027999.16	ENSMUST00000029629.15	1561	4	111	16	-97	-12	multi-exon	FALSE	canonical	3	341	junction_1	3.68178700572909	119	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCTTAGTAATCTCCTGA	NA	False	NA	NA	False	NA	NA	NA	129672365	129689458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_129672585_129682529_129682607_129683916_129684083_129688486
66961	chr7	-	1477	8	NNC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	-25	14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	16.2556112760851	3	56	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCAAAAGAACTGAGCCCC	NA	False	NA	NA	False	NA	NA	NA	44711155	44703022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44703622_44703942_44704072_44704190_44704280_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011
66962	chr5	+	1415	12	NIC	ENSMUSG00000054099.12	novel	4467	12	NA	NA	27	-1241	combination_of_known_splicesites	FALSE	canonical	1	2	junction_10	17.9051680059784	1	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCAGAAACTGCAGCCAC	NA	False	NA	NA	False	NA	NA	NA	8472925	8503495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_8473040_8474796_8474888_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8502745_8502827_8503191
66963	chr9	+	1525	12	ISM	ENSMUSG00000032489.18	ENSMUST00000197248.5	3184	20	-227	15396	-191	-15396	5prime_fragment	TRUE	canonical	0	0	junction_7	0.98752549920002	2	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGGAGGGGACGCTGGA	627	False	NA	NA	False	NA	NA	NA	110305834	110335803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110306152_110312128_110312227_110314102_110314269_110317603_110317711_110318903_110319129_110323469_110323554_110323659_110323753_110324878_110325027_110325984_110326050_110330656_110330735_110335260_110335330_110335728
66964	chr9	+	1651	10	ISM	ENSMUSG00000032489.18	ENSMUST00000061155.12	2956	21	29692	26	29692	-26	3prime_fragment	TRUE	canonical	0	0	junction_4	1.15470053837925	3	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTAATAAAGATCTGATG	2335	False	NA	NA	False	NA	NA	NA	110335753	110353276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110335834_110338525_110338582_110339448_110339540_110340388_110340523_110343496_110343692_110346572_110346788_110348102_110348280_110348567_110348684_110350327_110350433_110352794
66965	chr2	+	1273	6	FSM	ENSMUSG00000044349.17	ENSMUST00000149303.8	1329	6	64	-8	0	8	multi-exon	FALSE	canonical	0	0	junction_3	3.86781592116274	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	158217681	158223518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_158217809_158218000_158218247_158218664_158218745_158218913_158218993_158222690_158222772_158222858
66966	chr1	+	999	6	ISM	ENSMUSG00000046101.17	ENSMUST00000171802.8	2553	15	19	24199	-11	-4511	intron_retention	TRUE	canonical	3	18	junction_3	6.71118469422501	1	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGTAATGATATCACATT	NA	False	NA	NA	False	NA	NA	NA	9978881	9986980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540
66967	chr14	+	978	6	FSM	ENSMUSG00000050335.18	ENSMUST00000150290.9	1298	6	29	291	2	3	multi-exon	FALSE	canonical	3	42	junction_1	20.2286924935845	210	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCATCGCTTTGGGGGTT	NA	False	NA	NA	False	NA	NA	NA	47611374	47623254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47611437_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
66969	chr4	-	2579	23	NIC	ENSMUSG00000063077.16	novel	5992	47	NA	NA	2609	-4109	combination_of_known_splicesites	FALSE	canonical	3	47	junction_18	9.49956501831479	2	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGGACTCCAGGAGCA	NA	False	NA	NA	False	NA	NA	NA	149329827	149268801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_149268888_149270559_149270632_149272047_149272288_149272455_149272602_149274179_149274242_149275605_149275740_149277029_149277145_149282888_149282995_149283714_149283800_149286964_149287032_149288642_149288752_149291174_149291231_149292305_149292425_149294498_149294590_149297752_149297916_149298079_149298210_149298535_149298622_149299363_149299483_149306683_149306822_149307686_149307866_149309546_149309696_149310719_149310814_149329794
66971	chr2	+	1346	6	FSM	ENSMUSG00000041921.17	ENSMUST00000123858.8	1898	6	0	552	0	-552	multi-exon	FALSE	canonical	2	2	junction_5	26.2022899762597	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGCATTGCTAATCCCA	NA	False	NA	NA	False	NA	NA	NA	71283676	71345747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71344967
66974	chr6	+	1480	13	ISM	ENSMUSG00000005225.16	ENSMUST00000101385.3	1838	14	10037	0	10037	0	3prime_fragment	FALSE	canonical	1	70	junction_2	60.4703784233791	43	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGCCCTAGTTAATTT	NA	False	NA	NA	False	NA	NA	NA	54590168	54618018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_54590194_54592199_54592356_54593617_54593743_54596178_54596338_54597256_54597298_54599105_54599264_54601059_54601217_54601537_54601624_54605830_54605890_54606804_54606936_54607488_54607560_54612694_54612757_54617768
66975	chr8	+	1252	10	FSM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	55	0	-6	0	multi-exon	FALSE	canonical	3	162	junction_1	41.4568048294447	866	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	11547560	11563287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
66976	chr4	+	1317	11	Antisense	novelGene_ENSMUSG00000028391.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	6	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCCCCTAGCAACCAGGC	NA	False	NA	NA	False	NA	NA	NA	62371970	62389124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_62372181_62374053_62374218_62375710_62375819_62377052_62377124_62378561_62378660_62378756_62378901_62380373_62380453_62381580_62381714_62382163_62382309_62387075_62387173_62389056
66977	chr2	+	921	2	NIC	ENSMUSG00000039001.13	novel	481	5	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	7682	junction_1	0	77	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGCTTTTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	179899209	179900234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_179899477_179899580
66979	chr17	-	1471	7	NIC	ENSMUSG00000002668.9	novel	2521	24	NA	NA	1035	0	intron_retention	FALSE	canonical	3	24	junction_3	5.29150262212918	56	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTATCTGGGGCTTTC	NA	False	NA	NA	False	NA	NA	NA	57377762	57373054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57373642_57373731_57374117_57374592_57374701_57374788_57374834_57377112_57377185_57377407_57377449_57377529
66981	chr16	-	735	6	NNC	ENSMUSG00000040732.21	novel	2139	10	NA	NA	-15104	-19363	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.72046505340853	1	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGAAGGAGCTGTGCAAGA	3475	False	NA	NA	False	NA	NA	NA	95346328	95181027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95181131_95190752_95190905_95210593_95210812_95325385_95325474_95331122_95331225_95346256
66982	chr16	-	615	1	ISM	ENSMUSG00000040732.21	ENSMUST00000233881.2	3249	11	170569	13	99449	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCGAACCAGAACGGTGGT	NA	False	NA	NA	False	NA	NA	NA	95160655	95160040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_95160000_95160700
66983	chr11	+	811	3	NIC	ENSMUSG00000086841.2	novel	462	5	NA	NA	100	-53	intron_retention	FALSE	canonical	3	3662	junction_1	536.5	1	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCACAGGATCTTCTAT	NA	False	NA	-89	True	NA	NA	NA	62493802	62495580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62493850_62494060_62494473_62495228
66984	chr11	+	1107	8	NNC	ENSMUSG00000085434.2	novel	1850	4	NA	NA	-4438	-13832	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	4.13052351280027	26	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTAGTTTTTGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	117757637	117764410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117757755_117758341_117758516_117759451_117759587_117759997_117760143_117762104_117762260_117762604_117762722_117762920_117763030_117764255
66987	chr13	-	824	3	FSM	ENSMUSG00000046573.8	ENSMUST00000053265.8	2086	3	192	1070	192	-1070	multi-exon	FALSE	canonical	3	325	junction_1	9.5	350	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGAATGTGCATTTATTT	NA	False	NA	NA	False	NA	NA	NA	36301317	36163447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_36163891_36276788_36276910_36301057
66988	chr2	+	1733	4	ISM	ENSMUSG00000047250.14	ENSMUST00000149930.3	2741	10	6711	26	485	-26	3prime_fragment	TRUE	canonical	2	3	junction_1	0.942809041582063	6	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGAAGCTAATAAAATTCT	NA	False	NA	NA	False	NA	NA	NA	36132971	36142255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_36133022_36135055_36135343_36139107_36139256_36141007
66990	chr7	+	2277	3	FSM	ENSMUSG00000078670.4	ENSMUST00000107456.4	2683	3	400	6	400	-6	multi-exon	FALSE	canonical	3	29	junction_2	1.5	16	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCAGATTGAGTCACGAG	NA	False	NA	NA	False	NA	NA	NA	73390449	73426661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_73390577_73416234_73416367_73424643
66991	chr9	+	1167	3	FSM	ENSMUSG00000032599.13	ENSMUST00000192307.6	1191	3	28	-4	2	-1	multi-exon	FALSE	canonical	3	25	junction_2	47	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCTTGTAGTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	108661022	108675192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108661070_108673262_108673596_108674405
66992	chr6	-	1985	5	FSM	ENSMUSG00000030283.8	ENSMUST00000032421.4	8991	5	316	6690	5	-3	multi-exon	FALSE	canonical	2	8	junction_4	3.11247489949718	10	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATAGTCCCCTCCACTAG	NA	False	NA	NA	False	NA	NA	NA	142909862	142773960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142909261
66993	chr13	+	894	4	FSM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	15	4	15	0	multi-exon	FALSE	canonical	3	786	junction_3	16.1314048434171	2737	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTCATGTAATTCTTA	NA	False	NA	NA	False	NA	NA	NA	69957974	69964219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_69958172_69959725_69959810_69961822_69961926_69963709
66994	chr12	+	2223	1	ISM	ENSMUSG00000035133.10	ENSMUST00000219443.2	9323	7	65736	1	53675	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATCCAAGTCTTTTTAAT	8894	False	NA	106	True	NA	NA	NA	52616534	52618757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_52616500_52618800
66995	chr11	-	3641	1	NIC	ENSMUSG00000085379.2	novel	3201	2	NA	NA	21	-8641	mono-exon	FALSE	NA	NA	NA	NA	NA	5	68	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATAGAGCCAGTGAATTA	NA	False	NA	NA	False	NA	NA	NA	58868855	58865214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_58865200_58868900
66996	chr11	+	822	3	ISM	ENSMUSG00000020491.16	ENSMUST00000132570.2	424	4	1	723	1	-723	5prime_fragment	FALSE	canonical	3	28	junction_1	7.5	1	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTACCGTGTATGTGCTG	NA	False	NA	NA	False	NA	NA	NA	58758093	58768107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_58758136_58759640_58759833_58767519
66998	chr4	+	1513	5	FSM	ENSMUSG00000000085.17	ENSMUST00000136801.8	1536	5	21	2	21	-2	multi-exon	FALSE	canonical	3	10	junction_1	26.8735464723211	76	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCCGTGTCTTTTTAACC	NA	False	NA	NA	False	NA	NA	NA	120374843	120387379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_120374904_120379651_120379847_120382194_120382261_120385352_120385496_120386330
66999	chr7	+	475	3	ISM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	676	-40	364	0	3prime_fragment	FALSE	canonical	3	14983	junction_1	18	1	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1999	False	NA	NA	False	NA	NA	NA	3707726	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3707768_3708731_3708919_3709649
67000	chr3	+	826	7	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	2284	-16876	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	88.5412647049699	1	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGTTGTCATCTACATCTC	NA	False	NA	NA	False	NA	NA	NA	88684806	88716018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88684822_88691614_88691807_88695643_88695746_88696664_88696715_88706913_88707026_88715213_88715413_88715862
67001	chr5	-	443	5	NNC	ENSMUSG00000043323.18	novel	4469	17	NA	NA	-4272	-33151	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	68.8526506388825	2	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAAGGTGAGCCTGGCTTC	NA	False	NA	NA	False	NA	NA	NA	110585459	110543916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110543941_110563895_110563932_110565708_110565814_110580766_110580968_110585382
67002	chr15	-	1054	6	ISM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	2584	6	27	-2	3prime_fragment	FALSE	canonical	2	9	junction_4	10.6695829346793	148	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATACTGTGTGCTTGCATT	8469	False	NA	NA	False	NA	NA	NA	100583218	100572307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014
67004	chr13	+	1470	2	NNC	ENSMUSG00000074867.5	novel	1379	3	NA	NA	31	-24623	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTTCTTTTTAATAAAT	NA	False	NA	NA	False	NA	NA	NA	62277777	62295449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62278639_62294840
67005	chr13	+	2832	1	ISM	ENSMUSG00000021704.9	ENSMUST00000076169.4	6275	9	10596	16	10185	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	19	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACTGTTTGTTAATTCT	NA	False	NA	NA	False	NA	NA	NA	92991890	92994722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_92991900_92994700
67007	chr1	-	1124	1	Intergenic	novelGene_392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGGTAACACATAAATACAT	NA	False	NA	NA	False	NA	NA	NA	78437731	78436607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_78436600_78437700
67009	chr2	+	1056	5	Intergenic	novelGene_2853	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_2	5.1234753829798	121	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTTTGGTGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177292140	177305428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_177292231_177295046_177295176_177303443_177303609_177304013_177304102_177304844
67010	chr12	+	3086	5	NNC	ENSMUSG00000044456.17	novel	3892	10	NA	NA	13611	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.29903810567666	5	68	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAAAGCTAACTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	102334649	102357101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_102336112_102339828_102340138_102348811_102348944_102353812_102353977_102356082
67013	chr14	-	759	7	NIC	ENSMUSG00000022013.5	novel	6193	6	NA	NA	24	3	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	278.917799519659	215	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGATGCTTTTCCACATCA	NA	False	NA	NA	False	NA	NA	NA	78112342	78063651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_78063911_78064894_78065016_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
67014	chr4	+	2366	1	ISM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	28202	23	28202	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	11	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTTTGCTCAGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	6219299	6221665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_6219300_6221700
67015	chr11	+	1704	15	NIC	ENSMUSG00000060216.16	novel	1848	15	NA	NA	-2	-7	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	65.7627538650745	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGGCATGAATGTGTATG	NA	False	NA	NA	False	NA	NA	NA	70323521	70331493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_70323580_70326341_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
67016	chr2	-	888	6	NIC	ENSMUSG00000002458.14	novel	1511	6	NA	NA	-4	-3	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	48.4090900554844	49	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTACTTTGTTCTTTCAA	NA	False	NA	NA	False	NA	NA	NA	181335727	181330217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181330512_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
67017	chr6	+	936	4	Intergenic	novelGene_4252	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_3	70.1046836286041	445	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTCTGGTGATTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	125409631	125435802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_125409775_125409999_125410201_125434610_125434718_125435317
67020	chr19	+	1254	10	NIC	ENSMUSG00000039126.11	novel	2115	11	NA	NA	0	-198	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	35.5520831637747	6	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAATTACGTGCCTCAAT	NA	False	NA	NA	False	NA	NA	NA	17114129	17198360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594_17185694_17189655_17189695_17198147
67021	chr1	+	1862	16	NNC	ENSMUSG00000073725.9	novel	4453	16	NA	NA	10	631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	49.7578134567828	1	68	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATATACATTCCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	24717829	24802105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770873_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801369_24801709
67022	chr13	+	416	1	Genic_Genomic	ENSMUSG00000114893.2	novel	NA	NA	NA	NA	639	121	mono-exon	FALSE	NA	NA	NA	NA	NA	13	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAATATCTGCAAAATTC	NA	False	NA	NA	False	NA	NA	NA	107171430	107171846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_107171400_107171800
67023	chr8	-	2531	1	ISM	ENSMUSG00000061410.7	ENSMUST00000046386.5	7444	13	51654	14	3267	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAACTCAACATGTT	NA	False	NA	NA	False	NA	NA	NA	122327986	122325455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122325500_122328000
67024	chr11	-	2150	2	Intergenic	novelGene_2247	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	12	junction_1	0	37	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCCCCCCTTTTATAAAG	NA	False	NA	NA	False	NA	NA	NA	31937016	31932654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_31934750_31936961
67025	chr7	+	762	1	Intergenic	novelGene_2871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGAAACTTTAGTCTGCC	4312	False	NA	NA	False	NA	NA	NA	4817295	4818057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_4817300_4818100
67026	chr9	+	824	4	FSM	ENSMUSG00000046402.11	ENSMUST00000052068.11	2652	4	1804	24	1804	-24	multi-exon	FALSE	canonical	3	98	junction_1	8.01387685344754	834	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGTGTTTTGGAGGAAT	4689	False	NA	NA	False	NA	NA	NA	98306817	98328604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_98307105_98307505_98307685_98326642_98326745_98328348
67027	chrX	+	284	4	NNC	ENSMUSG00000008682.14	novel	855	6	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4522.18356794837	2	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGTTTTTGTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	73314583	73316736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73314591_73316331_73316441_73316520_73316564_73316611
67028	chr14	-	1459	10	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40513	11	24	-4	3prime_fragment	FALSE	canonical	3	29	junction_7	7.57187779440036	80	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCTAGAGTGTATGCC	NA	False	NA	NA	False	NA	NA	NA	51067504	51061526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328
67029	chr2	-	1322	5	NIC	ENSMUSG00000038932.14	novel	2225	6	NA	NA	1412	-44	combination_of_known_junctions	FALSE	canonical	3	36	junction_3	24.2899156029822	39	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCAGTGCTTTATGTGT	7142	False	NA	NA	False	NA	NA	NA	180282728	180263792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_180264508_180277046_180277189_180280196_180280444_180282093_180282257_180282673
67030	chr9	+	1416	11	FSM	ENSMUSG00000032263.15	ENSMUST00000034801.11	1472	11	49	7	49	-7	multi-exon	FALSE	canonical	3	595	junction_3	45.3898667105335	192	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCCTCAGACTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	83807251	84006285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_83807413_83834576_83834655_83835765_83835835_83870828_83870963_83871193_83871350_83873766_83873876_83892306_83892405_83894561_83894673_83951157_83951245_84004286_84004436_84006021
67032	chr4	+	1448	10	ISM	ENSMUSG00000028760.17	ENSMUST00000140796.2	5363	22	31602	2117	-1189	237	3prime_fragment	FALSE	canonical	3	10	junction_6	3.8873012632302	8	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTGTTTTAATCTTTT	5322	False	NA	NA	False	NA	NA	NA	137910599	137933702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137910657_137911962_137912079_137915356_137915530_137917925_137918052_137919277_137919360_137921354_137921454_137925389_137925537_137929231_137929314_137930655_137930803_137933283
67033	chr2	+	314	1	Antisense	novelGene_ENSMUSG00000053916.5_AS_novelGene_ENSMUSG00000068115.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGGCAACCCAAGCAGCGC	NA	False	NA	NA	False	NA	NA	NA	150880935	150881249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_150880900_150881200
67034	chr13	+	2157	1	Intergenic	novelGene_1566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAACCCACTCAATCACCC	NA	False	NA	NA	False	NA	NA	NA	120129304	120131461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_120129300_120131500
67035	chr1	+	1097	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	47.0130005660373	181	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATGAGTGCTGTTTCT	2035	False	NA	NA	False	NA	NA	NA	75145292	75148268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
67037	chr6	-	1624	11	FSM	ENSMUSG00000004631.16	ENSMUST00000115579.8	1696	11	65	7	-15	-3	multi-exon	FALSE	canonical	3	7	junction_4	4.92848861214064	36	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCTAATGTGTGGTAAAAT	9933	False	NA	NA	False	NA	NA	NA	4747139	4674356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4746979
67038	chr12	-	1381	3	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	0	-1393	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	74	43	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTTTTTCTTAAAGCC	NA	False	NA	NA	False	NA	NA	NA	52053284	52045682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_52046657_52051661_52051732_52052947
67039	chr5	+	459	2	Genic_Genomic	ENSMUSG00000062353.7	novel	438	1	NA	NA	-41	51	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3286389	3286919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_3286584_3286654
67040	chr4	-	659	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9098.38236652538	2	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGCTTTCATTAATAG	NA	False	NA	NA	False	NA	NA	NA	86775604	86772899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86773193_86774103_86774197_86774499_86774594_86774964_86775097_86775557
67041	chr8	-	1829	1	ISM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	95968	7	11893	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTATAGAGCTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	26513284	26511455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_26511500_26513300
67042	chr11	+	1395	10	ISM	ENSMUSG00000019102.11	ENSMUST00000019246.4	1729	11	3621	26	3621	-26	3prime_fragment	TRUE	canonical	1	1	junction_1	6.02668960992027	43	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAAAGCCTCTAAAGA	NA	False	NA	NA	False	NA	NA	NA	61103191	61109221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_61103220_61104276_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906_61108074_61108488_61108589_61108816_61108948_61109039
67043	chr5	-	1099	5	NNC	ENSMUSG00000044339.13	novel	899	4	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_3	222.369484192413	40	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTATTTGGGGGGGGG	8027	False	NA	NA	False	NA	NA	NA	114266230	114261994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114262316_114263592_114263792_114263920_114264169_114265586_114265831_114266143
67047	chr8	+	2815	13	NNC	ENSMUSG00000036246.15	novel	3933	21	NA	NA	-58	213	intron_retention	FALSE	non_canonical	0	0	junction_6	3.85861230093008	3	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGTGGTGCTTGCTGTAA	NA	False	NA	NA	False	NA	NA	NA	70266477	70274196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70266603_70266687_70266826_70267044_70267242_70268083_70268194_70268263_70268342_70268700_70268861_70268935_70269014_70269386_70269576_70269652_70269791_70269882_70270080_70270372_70270761_70273083_70273151_70273246
67048	chr9	-	2301	1	FSM	ENSMUSG00000111870.2	ENSMUST00000213534.2	409	1	-1111	-781	-1111	781	mono-exon	FALSE	NA	NA	NA	NA	NA	3	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTAATTTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	18202267	18199966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_18200000_18202300
67049	chr7	-	1056	1	ISM	ENSMUSG00000001802.17	ENSMUST00000155404.3	2089	2	1282	10	1016	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAACAGAATCGGCTGTTC	NA	False	NA	NA	False	NA	NA	NA	34901368	34900312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_34900300_34901400
67050	chr12	+	2890	1	ISM	ENSMUSG00000020640.11	ENSMUST00000217672.2	5431	18	41665	176	11906	-176	mono-exon	FALSE	NA	NA	NA	NA	NA	10	36	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGATGTATTTGCCTTA	6279	False	NA	NA	False	NA	NA	NA	4726440	4729330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_4726400_4729300
67051	chr18	+	783	2	Genic_Genomic	ENSMUSG00000117428.2	novel	790	1	NA	NA	45	85	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACTACAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	8051247	8052077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_8051797_8051843
67052	chr4	+	2871	15	ISM	ENSMUSG00000057722.18	ENSMUST00000102777.10	3410	18	72	9532	69	-169	5prime_fragment	FALSE	canonical	0	0	junction_5	1.8405855323893	8	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGTGTACTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	101574672	101639923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_101575136_101585206_101585267_101590463_101590794_101592756_101592881_101602707_101602914_101607483_101607627_101609257_101609403_101622057_101622349_101622500_101622619_101625243_101625444_101628493_101628643_101630032_101630193_101631397_101631481_101637101_101637319_101639741
67053	chr12	+	2177	8	ISM	ENSMUSG00000020656.17	ENSMUST00000020985.9	3070	14	22181	7	22181	-4	3prime_fragment	FALSE	canonical	1	3	junction_1	4.09579176766613	10	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACAAGGTGTCGGCTCCT	1502	False	NA	NA	False	NA	NA	NA	24652928	24667383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_24653066_24658027_24658080_24658431_24658572_24659702_24659741_24661821_24661914_24662153_24662240_24664393_24664459_24665816
67054	chrX	-	846	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	31	-2	0	2	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	3677	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTCAATTGGTAGCAT	NA	False	NA	NA	False	NA	NA	NA	20828225	20817898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
67056	chr4	+	1186	4	ISM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	11422	0	7365	0	3prime_fragment	FALSE	canonical	3	67	junction_2	3.85861230093008	123	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTAGCATCTGCTTC	4199	False	NA	NA	False	NA	NA	NA	140981601	140984875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_140981760_140982011_140982092_140983614_140983720_140984032
67059	chr8	-	612	5	NNC	ENSMUSG00000093904.3	novel	4902	5	NA	NA	29	200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3033.94442104663	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCATGGATTTCCGTTTGT	NA	False	NA	NA	False	NA	NA	NA	127672561	127661535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_127661701_127663822_127663933_127666621_127666704_127667928_127667976_127672353
67060	chr11	+	1027	5	NIC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	92	5	intron_retention	FALSE	canonical	3	35	junction_2	469.56489168165	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTAACAAAGGTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	101518889	101526903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_101519279_101521063_101521187_101524627_101524727_101525613_101525700_101526573
67062	chr2	-	1668	3	Intergenic	novelGene_2827	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGCCCGGCTGAAACCAT	NA	False	NA	NA	False	NA	NA	NA	173132919	173130520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_173131928_173132166_173132331_173132822
67063	chr8	-	805	6	ISM	ENSMUSG00000057672.17	ENSMUST00000128523.8	3070	9	3529	-22	-258	-6	3prime_fragment	FALSE	canonical	3	265	junction_4	22.1936927977297	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCCATACATGCATTTTC	NA	False	NA	NA	False	NA	NA	NA	84398667	84396733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_84396998_84397367_84397449_84397550_84397659_84397927_84398071_84398345_84398423_84398535
67065	chr4	+	1275	6	FSM	ENSMUSG00000041556.9	ENSMUST00000047951.9	1288	6	1	12	1	-12	multi-exon	FALSE	canonical	3	50	junction_2	6.34350061086148	38	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCAACAATGGACGCACAGA	NA	False	NA	NA	False	NA	NA	NA	148245078	148250869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
67066	chr14	+	644	1	FSM	ENSMUSG00000015971.6	ENSMUST00000225368.2	3998	1	3582	-228	3582	228	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAAACAGTACAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	29717408	29718052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_29717400_29718100
67067	chr9	-	2319	2	ISM	ENSMUSG00000066235.8	ENSMUST00000216669.2	2504	4	1057	2	1053	-2	3prime_fragment	FALSE	canonical	1	1	junction_1	0	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCCAAGTCTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	121824018	121810678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_121812890_121823910
67069	chr11	+	1019	1	NIC	ENSMUSG00000020519.6	novel	1151	4	NA	NA	7561	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTCGGTCAGGAGGATT	NA	False	NA	NA	False	NA	NA	NA	57700023	57701042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_57700000_57701000
67070	chr2	+	1149	9	FSM	ENSMUSG00000026921.21	ENSMUST00000239075.2	1163	9	11	3	11	2	multi-exon	FALSE	canonical	3	256	junction_1	46.4239970273995	599	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTGTTGTCAATGGGG	183	False	NA	NA	False	NA	NA	NA	26476652	26482690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
67071	chr7	+	1873	3	FSM	ENSMUSG00000031073.7	ENSMUST00000033389.7	1810	3	-65	2	-65	-2	multi-exon	FALSE	canonical	2	3	junction_2	1.5	19	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTATTTGTTCTATTCCA	NA	False	NA	NA	False	NA	NA	NA	144450202	144454688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_144450669_144450852_144450957_144453385
67072	chr5	-	1497	5	FSM	ENSMUSG00000011884.14	ENSMUST00000112214.8	944	5	22	-575	-11	-110	multi-exon	TRUE	canonical	0	0	junction_2	605.262081663803	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTTTAAAAAAAAAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	114828980	114807568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114808651_114812114_114812247_114814396_114814460_114815681_114815741_114828819
67074	chr3	+	1074	10	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	2	-237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	310.516216947931	1	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACCCTGGACCTGACAGT	NA	False	NA	NA	False	NA	NA	NA	105866825	105874606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872472_105873080_105873190_105873672_105873742_105874478
67075	chr17	-	1162	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	16	15	-1	-5	multi-exon	FALSE	canonical	3	95	junction_5	123.227269709265	441	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGCAATGACATAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	36207996	36203583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
67078	chr8	+	1644	12	ISM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	6726	10	1404	-2	3prime_fragment	FALSE	canonical	3	278	junction_6	25.8469749816585	74	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGTAAATGCGGTGGTC	NA	False	NA	NA	False	NA	NA	NA	3557182	3565222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_3557317_3557400_3557567_3558318_3558428_3558683_3558781_3559135_3559236_3560319_3560427_3560539_3560690_3560813_3560916_3561687_3561811_3562649_3562866_3564782_3564914_3565013
67079	chrX	-	1448	1	ISM	ENSMUSG00000031258.5	ENSMUST00000033611.5	2876	3	11430	8	11430	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	11	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTCTGCTACTGTCCT	NA	False	NA	NA	False	NA	NA	NA	133051247	133049799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_133049800_133051200
67080	chr9	+	1422	9	Intergenic	novelGene_1112	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	18.1895402635691	2	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTCCGGCACTACCGCG	1517	False	NA	NA	False	NA	NA	NA	72927163	72946970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_72927451_72928567_72928635_72929558_72929769_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946039_72946741
67081	chr10	+	2483	5	FSM	ENSMUSG00000063428.9	ENSMUST00000019977.8	3000	5	14	503	1	-503	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAGTCTTACGATTGGCC	NA	False	NA	NA	False	NA	NA	NA	40506020	40525424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_40506088_40507601_40507777_40508933_40509043_40513340_40513518_40523469
67082	chr7	+	1035	7	NNC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	64	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	577.0184861279	30	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	NA	False	NA	NA	NA	25358706	25367457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_25358809_25360685_25360819_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
67086	chr10	+	2704	8	Antisense	novelGene_ENSMUSG00000019774.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGGAAATGTTACGAGAAC	NA	False	NA	NA	False	NA	NA	NA	5761493	5773834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5763405_5764038_5764171_5765545_5765670_5767448_5767609_5768923_5768985_5770024_5770105_5773525_5773658_5773730
67087	chr11	+	693	5	NNC	ENSMUSG00000018286.7	novel	798	6	NA	NA	9	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2661.5505349326	732	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTGTGTGAAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	70416201	70418479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70416255_70417103_70417252_70417369_70417500_70418004_70418150_70418262
67088	chr9	-	518	1	ISM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	77634	354	4831	-354	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGAGCCGCACCGACAC	NA	False	NA	NA	False	NA	NA	NA	66422790	66422272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_66422300_66422800
67089	chr8	+	2026	7	ISM	ENSMUSG00000014907.11	ENSMUST00000118009.2	2990	8	4449	6	3709	-6	3prime_fragment	FALSE	canonical	3	67	junction_5	3.90156663690654	138	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGAATTTAGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	67317317	67343210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_67317353_67330318_67330413_67332250_67332334_67336094_67336256_67338416_67338469_67340424_67340528_67341712
67090	chr2	-	3252	1	NIC	ENSMUSG00000027371.11	novel	1211	8	NA	NA	11	-787	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	117	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTCTTAAAAGTTAGA	NA	False	NA	NA	False	NA	NA	NA	127286389	127283137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_127283100_127286400
67091	chr10	-	2132	1	Intergenic	novelGene_3496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCTCAAAAACCCAACCAAA	NA	False	NA	NA	False	NA	NA	NA	82584276	82582144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_82582100_82584300
67093	chr9	+	2022	5	NNC	ENSMUSG00000056267.15	novel	1768	6	NA	NA	-71	2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	158.731494984455	1	88	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCTTGGTCATCATGT	NA	False	NA	NA	False	NA	NA	NA	99128268	99146983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145450
67094	chr14	+	1645	4	NNC	ENSMUSG00000095975.4	novel	570	3	NA	NA	-1709	18	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.94392028877595	12	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTATGTAGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	25937018	25956798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_25937059_25952339_25952543_25955303_25955421_25955513
67096	chr12	+	1542	13	FSM	ENSMUSG00000020978.11	ENSMUST00000021362.5	1905	13	141	222	108	-222	multi-exon	TRUE	canonical	3	493	junction_10	56.6727937863977	112	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTGTCTATTGTTAAAG	NA	False	NA	NA	False	NA	NA	NA	69343636	69357239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926
67097	chr5	+	1419	9	NIC	ENSMUSG00000029130.13	novel	1565	10	NA	NA	0	-40	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	11.1242977306435	84	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTCTTTATTGCATTA	NA	False	NA	NA	False	NA	NA	NA	29401000	29430439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_29401083_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
67098	chr7	-	1975	8	ISM	ENSMUSG00000025813.15	ENSMUST00000098326.3	10982	9	43254	8858	-30806	391	3prime_fragment	FALSE	canonical	3	22	junction_5	6.0676458804558	24	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAGCAGAACTTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	81299459	81259086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_81260190_81261053_81261135_81262008_81262120_81264090_81264248_81268323_81268464_81273999_81274093_81286108_81286241_81299301
67099	chr1	-	2382	1	ISM	ENSMUSG00000078185.4	ENSMUST00000104984.4	6905	2	7405	607	3128	-607	mono-exon	FALSE	NA	NA	NA	NA	NA	11	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGTGATAGGTTGCAAAA	NA	False	NA	NA	False	NA	NA	NA	175512791	175510409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_175510400_175512800
67101	chr2	+	666	6	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	-1	-107	at_least_one_novel_splicesite	FALSE	non_canonical	3	24	junction_5	608.990837369496	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	145745175	145758238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145745283_145753616_145753684_145754312_145754449_145757453_145757600_145757723_145757808_145758112
67103	chr17	-	753	5	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-14	1	intron_retention	FALSE	canonical	3	511	junction_4	169.300583283106	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGCCTTTTCTCTGTGAC	9416	False	NA	NA	False	NA	NA	NA	27158379	27156948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27158067_27158290
67104	chr8	+	1964	9	ISM	ENSMUSG00000031538.7	ENSMUST00000033941.7	2525	14	14971	17	14923	-17	3prime_fragment	FALSE	canonical	0	0	junction_3	2.54950975679639	13	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTTTCACACTTTTCC	NA	False	NA	NA	False	NA	NA	NA	23262733	23272843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_23262827_23263632_23263725_23265580_23265756_23266806_23266893_23268118_23268315_23268428_23268566_23268670_23268812_23270441_23270606_23271963
67105	chr17	-	1228	3	NNC	ENSMUSG00000077450.14	novel	6109	5	NA	NA	-52	142	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	294.5	28	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAAACCTACCACTCAGC	NA	False	NA	NA	False	NA	NA	NA	33979332	33965581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33966478_33968755_33968952_33979196
67106	chr6	+	893	6	Antisense	novelGene_ENSMUSG00000030342.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	62	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCACTGCAATGCCAGCGA	2904	False	NA	NA	False	NA	NA	NA	125437233	125449453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_125437692_125438189_125438298_125439278_125439387_125440645_125440723_125441352_125441421_125449379
67107	chr3	-	2960	14	ISM	ENSMUSG00000068740.15	ENSMUST00000147251.2	3486	18	1655	-184	-803	184	3prime_fragment	FALSE	canonical	1	1	junction_13	2.4973358585766	6	61	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGGCACTTTCCACCCG	NA	False	NA	NA	False	NA	NA	NA	108304612	108299353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_108300562_108300655_108300827_108300965_108301149_108301251_108301341_108301528_108301657_108302200_108302324_108302431_108302559_108302643_108302724_108302875_108302989_108303258_108303434_108303748_108303950_108304034_108304162_108304262_108304431_108304545
67112	chrX	+	1366	4	NNC	ENSMUSG00000015217.12	novel	1743	5	NA	NA	1	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	417.880631547123	3	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAACTGTTCTGTATTAC	NA	False	NA	NA	False	NA	NA	NA	70599596	70604251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70599797_70601658_70601814_70602038_70602150_70603351
67113	chr12	+	2104	4	FSM	ENSMUSG00000021250.14	ENSMUST00000021674.7	2108	4	0	4	0	-4	multi-exon	FALSE	canonical	1	1	junction_3	3.85861230093008	14	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGACCACCTTCTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	85520663	85524043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_85520955_85521708_85521961_85522365_85522474_85522590
67114	chr7	-	913	1	ISM	ENSMUSG00000062300.15	ENSMUST00000075447.14	2735	9	31994	23	31954	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAAAGTCTTGTGTTTTCT	7740	False	NA	NA	False	NA	NA	NA	19451504	19450591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19450600_19451500
67115	chr11	-	1575	8	FSM	ENSMUSG00000053797.11	ENSMUST00000007280.9	1565	8	-25	15	-25	-15	multi-exon	FALSE	canonical	1	2	junction_1	1.12485826771597	21	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTTGATGCAAACTTGT	6219	False	NA	NA	False	NA	NA	NA	100139753	100136931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100137155_100137294_100137342_100137435_100137657_100137927_100138054_100138139_100138302_100138387_100138545_100138682_100138766_100139197
67116	chr7	-	839	2	FSM	ENSMUSG00000045251.14	ENSMUST00000126756.2	338	2	-122	-379	-5	0	multi-exon	FALSE	canonical	3	21	junction_1	0	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	2	True	NA	NA	False	NA	NA	NA	127021144	127018138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127018814_127020980
67117	chr1	+	2096	4	NNC	ENSMUSG00000104011.2	novel	540	3	NA	NA	-3810	381	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	3.29983164553722	14	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGCCACGGAGCCTTCT	8086	False	NA	NA	False	NA	NA	NA	164286200	164291939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_164287310_164289944_164290168_164290325_164290407_164291256
67118	chr14	+	1511	4	NNC	ENSMUSG00000072723.13	novel	1296	8	NA	NA	-44	-2406	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	0.816496580927726	8	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATTCCTGATCTAGAAC	NA	False	NA	NA	False	NA	NA	NA	14678076	14696181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_14678366_14679640_14679756_14692960_14693263_14695376
67119	chrX	-	520	1	Intergenic	novelGene_3928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATTCTGCAAAGTGTACA	NA	False	NA	NA	False	NA	NA	NA	49723099	49722579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_49722600_49723100
67120	chr14	+	2395	12	Antisense	novelGene_ENSMUSG00000034235.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGCTTTAACAGAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	20627099	20657971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_20627380_20627521_20627645_20631513_20631687_20633380_20633561_20636070_20636218_20638142_20638290_20638400_20638508_20639254_20639333_20639441_20639556_20641548_20641684_20654121_20654217_20657155
67121	chr9	+	2130	1	FSM	ENSMUSG00000098332.3	ENSMUST00000184319.2	2639	1	85	424	85	-424	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGGACCTCTGCTTGCT	NA	False	NA	NA	False	NA	NA	NA	72947096	72949226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72947100_72949200
67123	chr5	-	851	3	NNC	ENSMUSG00000029554.16	novel	1603	7	NA	NA	47010	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	95	6	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCCTTCCCGGATTGTGT	NA	False	NA	NA	False	NA	NA	NA	140054211	139994457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_139995030_140051568_140051760_140054123
67124	chr2	+	935	2	Intergenic	novelGene_2860	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	18	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAAACAACTCTCTTCT	NA	False	NA	NA	False	NA	NA	NA	179547928	179549079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_179548179_179548394
67128	chr11	+	370	1	Genic_Genomic	ENSMUSG00000018666.14	novel	NA	NA	NA	NA	19034	12	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGGGGGGAGTTGAGAC	5500	False	NA	NA	False	NA	NA	NA	96699108	96699478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_96699100_96699500
67130	chr11	+	676	6	FSM	ENSMUSG00000018449.13	ENSMUST00000171254.8	548	6	-13	-115	3	1	multi-exon	FALSE	canonical	3	39	junction_3	115.373480488369	130	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	NA	False	NA	NA	NA	70861319	70868628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70865725_70865867_70868483
67131	chr4	-	1191	8	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	91	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5086.22541572745	6	56	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	NA	NA	NA	119151586	119135177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119136397_119138766_119138850_119139389_119139646_119139977_119140053_119142301_119142340_119150938_119151003_119151564
67132	chr10	-	2869	1	FSM	ENSMUSG00000112879.2	ENSMUST00000219693.2	361	1	-1102	-1406	-1102	1406	mono-exon	FALSE	NA	NA	NA	NA	NA	9	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCAGAAATCCACAGATGA	NA	False	NA	NA	False	NA	NA	NA	123015691	123012822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_123012800_123015700
67133	chr15	+	1258	5	FSM	ENSMUSG00000022359.11	ENSMUST00000228761.2	798	5	-39	-421	-24	0	multi-exon	FALSE	canonical	3	22	junction_3	18.5	142	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2636	False	NA	NA	False	NA	NA	NA	58004748	58022050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58016975_58017101_58021297
67134	chr7	-	877	6	NNC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	303.440933296746	3	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	126631935	126626903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126627013_126627102_126627163_126627241_126627433_126628459_126628673_126630100_126630270_126631800
67136	chr17	+	1673	4	FSM	ENSMUSG00000023979.15	ENSMUST00000024774.14	1668	4	-5	0	-5	0	multi-exon	FALSE	canonical	3	16	junction_3	4.64279609239471	76	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGTCCTGGAGGTGAA	1125	False	NA	NA	False	NA	NA	NA	47696312	47703892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47696622_47700034_47700185_47701905_47702027_47702799
67137	chr1	+	632	5	NIC	ENSMUSG00000026087.12	novel	969	6	NA	NA	-3	4	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	403.833737446489	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGATGGAGTCCTGATGC	NA	False	NA	NA	False	NA	NA	NA	37929620	37937423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_37929666_37932023_37932105_37933019_37933097_37936768_37936916_37937141
67138	chr2	+	1092	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	15	0	15	0	multi-exon	FALSE	canonical	3	219	junction_1	136	1340	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5232	False	NA	NA	False	NA	NA	NA	157209528	157238683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157209561_157220968_157221175_157237829
67140	chr10	+	1546	10	ISM	ENSMUSG00000044005.14	ENSMUST00000135441.2	1529	11	192	10	192	-2	3prime_fragment	FALSE	canonical	3	100	junction_5	5.53774924194538	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAATTATAATTTTTAT	225	False	NA	NA	False	NA	NA	NA	128039824	128045801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
67141	chr11	+	1625	4	ISM	ENSMUSG00000020467.16	ENSMUST00000020759.12	2037	11	-2	57728	-2	-52511	5prime_fragment	FALSE	canonical	1	1	junction_2	0.942809041582063	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCACCATACACACTGAA	NA	False	NA	NA	False	NA	NA	NA	28803201	28819015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_28803325_28804464_28804555_28817465_28817515_28817652
67144	chr7	+	2180	2	FSM	ENSMUSG00000058402.15	ENSMUST00000148489.3	2202	2	4	18	-3	-18	multi-exon	FALSE	canonical	3	39	junction_1	0	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATCCTCTCTATTGCTA	NA	False	NA	NA	False	NA	NA	NA	29559432	29562534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29559519_29560440
67145	chr3	-	1654	10	FSM	ENSMUSG00000104445.2	ENSMUST00000171887.4	1937	10	33	250	33	-250	multi-exon	TRUE	canonical	0	0	junction_8	2.76664435510861	50	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCGCCTCTCCC	NA	False	NA	NA	False	NA	NA	NA	88161983	88150430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88150756_88150899_88150974_88151831_88151954_88152439_88152574_88152742_88152881_88153121_88153289_88154738_88154887_88154993_88155145_88155583_88155771_88161775
67147	chr2	-	2217	1	Intergenic	novelGene_2674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTCCCAAACTGAGCATG	6570	False	NA	NA	False	NA	NA	NA	104420382	104418165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_104418200_104420400
67148	chr3	+	528	2	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	1754	2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	0	30	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	NA	False	NA	NA	NA	95337627	95338400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95337750_95337994
67150	chrX	-	1209	8	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	0	-2121	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.6358264689303	3	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGATAAGGCTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	156381646	156332940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156333191_156341959_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
67151	chr6	+	2314	1	NIC	ENSMUSG00000038538.18	novel	14644	17	NA	NA	255	5228	mono-exon	FALSE	NA	NA	NA	NA	NA	2	55	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTGTTTGGTAGTTG	NA	False	NA	NA	False	NA	NA	NA	38468193	38470507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_38468200_38470500
67152	chr2	-	1235	6	FSM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	-229	3	69	-3	multi-exon	FALSE	canonical	3	129	junction_1	185.215982031789	517	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTACTGTTGTTACC	NA	False	NA	NA	False	NA	NA	NA	168797438	168776735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
67153	chr14	+	2386	1	Intergenic	novelGene_605	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACAAATGCCAAAACTTT	8888	False	NA	NA	False	NA	NA	NA	70368894	70371280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_70368900_70371300
67155	chr8	+	695	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	44	6	5	-6	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	9	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTGGTGTCTGTGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	121395004	121400940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
67156	chrX	-	1682	4	FSM	ENSMUSG00000050394.15	ENSMUST00000052431.12	2024	4	60	282	4	-282	multi-exon	FALSE	canonical	1	3	junction_3	2.05480466765633	14	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGCGCTGAACCACTTA	NA	False	NA	NA	False	NA	NA	NA	133652106	133649493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_133650975_133651299_133651380_133651689_133651783_133652078
67157	chr5	+	1358	10	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	746.75163207053	1	85	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	8120	False	NA	NA	False	NA	NA	NA	145051112	145064875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058554_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064508_145064630
67158	chr19	+	684	6	NNC	ENSMUSG00000024940.12	novel	3857	19	NA	NA	2014	282	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.2	1	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTTACCCTCCAGACCA	NA	False	NA	NA	False	NA	NA	NA	5797774	5801555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5797900_5798693_5798767_5798897_5798997_5800976_5801103_5801199_5801332_5801426
67160	chr14	-	1424	7	FSM	ENSMUSG00000035953.15	ENSMUST00000160835.9	2755	7	184	1147	135	0	multi-exon	FALSE	canonical	3	698	junction_6	55.5447767321305	199	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	NA	False	NA	NA	NA	51168122	51164671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168069
67162	chr14	-	2530	20	NNC	ENSMUSG00000032849.15	novel	5715	31	NA	NA	114	-64750	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	57.0243666633116	2	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGAGCAATTTTTGAAGT	NA	False	NA	NA	False	NA	NA	NA	118943503	118830984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_118831078_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863_118865114_118867029_118867156_118868390_118868555_118869509_118869600_118891561_118891787_118905758_118905880_118906408_118906520_118943447
67163	chr18	+	1880	8	FSM	ENSMUSG00000038555.8	ENSMUST00000043484.8	1926	8	42	4	42	-4	multi-exon	FALSE	canonical	2	3	junction_2	2.56347977784662	25	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATTGTGATCTCTGCGT	NA	False	NA	NA	False	NA	NA	NA	34973683	34980512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_34973841_34975506_34975580_34975909_34975987_34978304_34978426_34978627_34978742_34978997_34979146_34979241_34979373_34979453
67164	chr15	-	1487	4	Intergenic	novelGene_3276	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.816496580927726	17	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGCAGAGTCTCACTA	NA	False	NA	NA	False	NA	NA	NA	38633542	38621864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_38622614_38623084_38623464_38630105_38630198_38633275
67165	chr1	-	1375	8	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	3893	-221	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_7	9.18739153760773	85	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTCGACTGTTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	75097951	75006518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75097876
67167	chr5	-	794	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	-42	-19	0	-2	multi-exon	FALSE	canonical	3	69	junction_2	75.5	537	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCTGAGACATCATGGGC	7313	False	NA	NA	False	NA	NA	NA	139812640	139809348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_139809829_139811882_139812120_139812563
67168	chr16	-	1449	1	Genic_Genomic	ENSMUSG00000097318.3	novel	NA	NA	NA	NA	-24	603	mono-exon	FALSE	NA	NA	NA	NA	NA	233	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTGAAGAGAATTAAGACA	NA	False	NA	NA	False	NA	NA	NA	33201069	33199620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_33199600_33201100
67169	chr17	-	899	2	FSM	ENSMUSG00000079471.5	ENSMUST00000169137.3	616	2	0	-283	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	1248	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	45912892	45911896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45912612_45912708
67170	chr7	-	611	4	Antisense	novelGene_ENSMUSG00000006333.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCAGTAAAGTGTCGTTTT	5898	False	NA	NA	False	NA	NA	NA	3709824	3707323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_3707447_3707643_3707767_3708729_3708930_3709659
67171	chr6	-	545	1	ISM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	49115	5318	33146	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	NA	False	NA	NA	NA	144945423	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_144944900_144945400
67172	chr19	+	784	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	16	553	-4	191	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCATTTGCAGTTGCTCTA	3708	False	NA	NA	False	NA	NA	NA	45549069	45566173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
67174	chr6	-	990	7	NIC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	4	-3	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	168.666007903852	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTGTCACTCTGACTG	NA	False	NA	NA	False	NA	NA	NA	115014812	114981344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_114981481_114987767_114987831_114989118_114989281_115002234_115002386_115009180_115009274_115011911_115012095_115014610
67177	chr7	+	1506	7	NNC	ENSMUSG00000030762.12	novel	1487	6	NA	NA	-2533	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	12.5929874665757	4	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTTCATCCCAGGTGTC	1843	False	NA	NA	False	NA	NA	NA	123058980	123067213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_123059030_123060189_123060342_123061796_123062042_123063411_123063539_123064331_123064547_123065808_123065944_123066630
67178	chr2	-	2493	13	ISM	ENSMUSG00000075376.11	ENSMUST00000100143.10	8799	20	133	8829	47	-1096	5prime_fragment	TRUE	canonical	3	26	junction_4	8.19044158353708	16	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAGCCCAAAGACGTAATT	NA	False	NA	NA	False	NA	NA	NA	37304700	37268913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_37269017_37271881_37272050_37272794_37273229_37275257_37275473_37279596_37279903_37288255_37288369_37289598_37289718_37289832_37289966_37290540_37290742_37295255_37295432_37299445_37299680_37301151_37301270_37304527
67180	chr1	-	2478	1	ISM	ENSMUSG00000042197.14	ENSMUST00000044455.8	11876	4	11248	8709	2067	-8709	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCTCCCAAATAATAACT	NA	False	NA	NA	False	NA	NA	NA	33842403	33839925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_33839900_33842400
67181	chr1	-	713	1	NIC	ENSMUSG00000042197.14	novel	712	2	NA	NA	390	-7529	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAACTGTTTTGGCAC	NA	False	NA	NA	False	NA	NA	NA	33839458	33838745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_33838700_33839500
67182	chr6	-	609	2	NIC	ENSMUSG00000042770.9	novel	1058	4	NA	NA	43	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGTGGAGACAGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	135145090	135114525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_135115062_135145017
67183	chr2	+	1618	6	FSM	ENSMUSG00000053475.6	ENSMUST00000065927.6	1710	6	83	9	83	-9	multi-exon	FALSE	canonical	1	1	junction_5	0.632455532033676	7	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATATAAACATTTTGTAGT	NA	False	NA	NA	False	NA	NA	NA	51928103	51946689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_51928282_51933740_51933879_51937442_51937605_51940854_51941084_51942315_51942357_51945819
67185	chr13	-	780	3	NIC	ENSMUSG00000021606.9	novel	757	3	NA	NA	0	-2	intron_retention	FALSE	canonical	3	341	junction_2	1016.5	27	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGTGAGTTGTTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	73476581	73467994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_73468536_73475534_73475589_73476396
67186	chr6	-	1189	4	NIC	ENSMUSG00000030008.10	novel	1038	5	NA	NA	90	0	intron_retention	FALSE	canonical	3	68	junction_3	41.907305117631	306	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	85428837	85423791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_85424671_85424917_85425028_85425472_85425574_85428738
67187	chr17	+	1761	7	NNC	ENSMUSG00000094724.9	novel	905	9	NA	NA	5151	-34	intron_retention	FALSE	canonical	3	11	junction_3	333.688310986299	4	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTCTAAAATTTTACTAA	NA	False	NA	NA	False	NA	NA	NA	7251557	7265555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_7252513_7256120_7256192_7259079_7259194_7260468_7260710_7262027_7262074_7263832_7263908_7265296
67188	chr8	-	1143	13	NIC	ENSMUSG00000031536.7	novel	1201	14	NA	NA	-14	-2	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	57.9167865706193	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTCTTAACAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	23143465	23118143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_23118386_23120358_23120499_23121470_23121536_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
67189	chr2	-	1268	8	NNC	ENSMUSG00000044320.15	novel	1672	7	NA	NA	-3842	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	12.1352917609116	30	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAAAGCCACTCTAGGTG	NA	False	NA	NA	False	NA	NA	NA	30697515	30685585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30695078_30695166_30697165
67190	chr11	-	2775	5	FSM	ENSMUSG00000005917.16	ENSMUST00000006071.14	2789	5	3	11	3	-6	multi-exon	FALSE	canonical	2	4	junction_1	0.433012701892219	5	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTTGTCAGCGTTGCTC	NA	False	NA	NA	False	NA	NA	NA	21951612	21944774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_21947059_21948369_21948522_21949379_21949586_21951121_21951190_21951547
67195	chr12	+	754	1	Antisense	novelGene_ENSMUSG00000002679.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTATCCATGGACATTCA	8550	False	NA	NA	False	NA	NA	NA	81639937	81640691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_81639900_81640700
67199	chr7	-	1839	1	Genic_Genomic	ENSMUSG00000110097.2	novel	NA	NA	NA	NA	-22	-2999	mono-exon	FALSE	NA	NA	NA	NA	NA	21	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTCAAATTTGGATAGA	NA	False	NA	NA	False	NA	NA	NA	10533006	10531167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_10531200_10533000
67200	chr8	-	1715	5	Antisense	novelGene_ENSMUSG00000031631.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGGCCGCCACGGACT	NA	False	NA	NA	False	NA	NA	NA	46645703	46616781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_46616900_46622594_46623688_46634752_46635023_46644615_46644768_46645621
67201	chr10	+	1324	7	FSM	ENSMUSG00000009092.6	ENSMUST00000009236.6	1321	7	-3	0	-3	0	multi-exon	FALSE	canonical	2	8	junction_5	4.01732359773132	57	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGACTCAATATGTTAGT	NA	False	NA	NA	False	NA	NA	NA	75729243	75731775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_75729352_75729452_75729519_75729603_75729678_75729800_75729895_75730265_75730462_75730872_75730964_75731080
67202	chr14	+	2002	2	Intergenic	novelGene_537	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	9	27	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTAGTGTCGTCACTCTTTT	6530	False	NA	NA	False	NA	NA	NA	31582057	31588985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_31582222_31587147
67204	chr1	+	496	8	ISM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	991	-2	38	0	3prime_fragment	FALSE	canonical	3	3085	junction_4	959.344376463979	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160863627	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
67205	chr2	+	1478	10	ISM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	3	37297	3	-142	5prime_fragment	FALSE	canonical	3	214	junction_9	13.5819415328763	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCCCGTAACTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	163916060	163960147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888
67206	chr9	-	2103	9	FSM	ENSMUSG00000032269.9	ENSMUST00000217289.2	1987	9	-128	12	-50	-11	multi-exon	FALSE	canonical	1	1	junction_3	0.927024810886958	9	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGATATCTTATTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	48822449	48810524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_48811291_48811860_48812083_48812173_48812385_48812717_48812879_48815876_48816047_48817582_48817693_48818653_48818699_48819894_48820062_48822198
67207	chr10	-	1314	1	Antisense	novelGene_ENSMUSG00000069601.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCGACTAGCTTATCCGG	NA	False	NA	NA	False	NA	NA	NA	69862485	69861171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_69861200_69862500
67208	chr14	+	894	6	Antisense	novelGene_ENSMUSG00000021807.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGAGGCGGGCAGCGCA	NA	False	NA	NA	False	NA	NA	NA	19861984	19873849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_19862312_19866199_19866342_19867128_19867216_19869974_19870077_19872635_19872759_19873736
67209	chr9	+	1422	2	NNC	ENSMUSG00000063488.7	novel	663	2	NA	NA	-728	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGCTCTCGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	122726064	122727682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_122726934_122727129
67211	chr10	+	1019	2	FSM	ENSMUSG00000020205.9	ENSMUST00000164773.2	1949	2	912	18	-498	-18	multi-exon	FALSE	canonical	3	16	junction_1	0	17	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGATATTACTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	111343058	111344488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111343510_111343920
67212	chr17	+	1362	3	ISM	ENSMUSG00000003279.18	ENSMUST00000097288.4	2861	10	199455	28475	-48065	226	internal_fragment	FALSE	canonical	2	6	junction_2	2	17	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACACTGTGACCCAAAAG	3897	False	NA	NA	False	NA	NA	NA	71068001	71094613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71068441_71072992_71073085_71093782
67213	chr8	-	1161	6	NNC	ENSMUSG00000015994.11	novel	966	7	NA	NA	66	154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	416.727440901124	3	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATAGTGTTTGATGTTT	NA	False	NA	NA	False	NA	NA	NA	26505612	26488993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497293_26505512
67214	chr17	-	1484	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	4	-10	intron_retention	FALSE	canonical	3	65	junction_7	8.15412753876019	106	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCTGGAGTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	24752696	24748048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24748618_24748714_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
67215	chr13	+	1037	1	Intergenic	novelGene_1364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCTCCTAGATGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	49322550	49323587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_49322600_49323600
67216	chr11	+	854	8	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGGAGAAGCCGGACGG	NA	False	NA	NA	False	NA	NA	NA	33102567	33113000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103988_33104060_33106001_33106104_33106662_33106748_33106991_33107029_33111103_33111220_33111545_33111619_33112917
67218	chr1	-	2810	3	Antisense	novelGene_ENSMUSG00000062510.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGACCGGAAGGATGCT	NA	False	NA	NA	False	NA	NA	NA	190802799	190795207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_190796929_190796974_190797450_190802185
67219	chr12	+	1382	1	NIC	ENSMUSG00000021096.12	novel	1486	6	NA	NA	2046	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACAAGACATGTAATCA	NA	False	NA	NA	False	NA	NA	NA	72839944	72841326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_72839900_72841300
67221	chr4	-	1648	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	6	573	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	4.63033476111609	86	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGCTTATCTATTTACT	NA	False	NA	NA	False	NA	NA	NA	94365398	94348594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_94349593_94350122_94350292_94352666_94352793_94353653_94353778_94356020_94356103_94365249
67222	chr8	+	2384	2	Intergenic	novelGene_1707	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	8	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAATGTCAGACCACGCC	7623	False	NA	NA	False	NA	NA	NA	89784053	89792677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_89784080_89790319
67223	chr7	+	692	5	Antisense	novelGene_ENSMUSG00000005447.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGCAGGGCCAGAAAACTC	3951	False	NA	NA	False	NA	NA	NA	24994473	24997328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_24994800_24995745_24995863_24996510_24996604_24996799_24996894_24997266
67224	chr3	+	845	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7379.50570837912	1	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACTAGCTTTAAACTT	NA	False	NA	NA	False	NA	NA	NA	137570352	137572576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571395_137571780_137571899_137572146
67225	chr7	+	1225	1	Intergenic	novelGene_2890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGCCCCAAAGTTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	23798632	23799857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_23798600_23799900
67226	chr4	-	1035	6	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	39	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	430.118402303366	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2531	False	NA	NA	False	NA	NA	NA	129229124	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129216170_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
67227	chr6	-	1160	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5500	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	57.9503235538854	5	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGGTAGATTTAGGCGG	2784	False	NA	NA	False	NA	NA	NA	83675025	83669794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672606_83672689_83672797_83673961_83674051_83674880
67228	chr3	+	1814	6	NNC	ENSMUSG00000028164.16	novel	511	4	NA	NA	3556	-140	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	65.07718494219	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTATGACTTTTATACTT	NA	False	NA	NA	False	NA	NA	NA	135259946	135277025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135260000_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
67229	chr15	+	767	1	Intergenic	novelGene_3310	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACAGAGAAAGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	75714362	75715129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_75714400_75715100
67231	chr5	+	1949	7	FSM	ENSMUSG00000107385.4	ENSMUST00000202828.2	1714	7	22	-257	22	-77	multi-exon	FALSE	canonical	0	0	junction_5	6.18241233033047	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTTGCATCTCAGCTCT	8054	False	NA	NA	False	NA	NA	NA	67621267	67634898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991_67626159_67630824_67631405_67634249
67232	chr17	-	854	7	FSM	ENSMUSG00000024026.14	ENSMUST00000167624.2	895	7	46	-5	-1	0	multi-exon	FALSE	canonical	3	704	junction_1	947.318613537998	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	30831587	30811834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
67235	SIRV4003	-	2327	1	Antisense	novelGene_SIRV4003A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	91	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	2341	14	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV4003_-_0_2300
67236	chr15	-	2054	7	NNC	ENSMUSG00000063765.13	novel	2548	6	NA	NA	5756	3199	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	122	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGCGCGGACCTTAACG	NA	False	NA	NA	False	NA	NA	NA	81572473	81567166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81567257_81568041_81568190_81568497_81568573_81568914_81569148_81569579_81569647_81570411_81570522_81571142
67237	chr5	+	547	3	NNC	ENSMUSG00000029198.4	novel	3528	4	NA	NA	196	-2383	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1283.5	34	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTGCACAGTCTACC	NA	False	NA	NA	False	NA	NA	NA	36622537	36629041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_36622600_36626781_36626846_36628620
67239	chr11	-	827	5	FSM	ENSMUSG00000032892.15	ENSMUST00000038644.5	820	5	-12	5	-12	-1	multi-exon	FALSE	canonical	3	482	junction_2	47.2989164780759	2666	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAATTTCTGTGCCTTCAA	7224	False	NA	NA	False	NA	NA	NA	68864681	68863314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_68863568_68863768_68863855_68863942_68864100_68864266_68864384_68864467
67240	chr6	+	2373	2	FSM	ENSMUSG00000007216.7	ENSMUST00000061720.5	4083	2	-2	1712	-2	-1712	multi-exon	FALSE	canonical	3	52	junction_1	0	1	130	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATTGGAGAAAAATGAAGG	462	False	NA	NA	False	NA	NA	NA	48590111	48598449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48590194_48596158
67241	chr13	+	2208	1	Genic_Genomic	ENSMUSG00000113883.2	novel	NA	NA	NA	NA	-1488	-3075	mono-exon	FALSE	NA	NA	NA	NA	NA	6	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTCACGGTCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	34316354	34318562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_34316400_34318600
67242	chr11	+	2329	1	NIC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	-3	-7724	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCAAACCCACTTTGATC	8811	False	NA	NA	False	NA	NA	NA	96142466	96144795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_96142500_96144800
67243	chr4	-	572	3	Intergenic	novelGene_1963	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATCAAGAAAATGCCCCC	NA	False	NA	NA	False	NA	NA	NA	129285772	129279551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_129279818_129280654_129280787_129285598
67244	chr7	-	1158	11	FSM	ENSMUSG00000040331.17	ENSMUST00000160289.9	1435	11	276	1	276	-1	multi-exon	FALSE	canonical	3	1333	junction_1	62.2636330453018	231	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACGTGATCGTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	130148835	130134256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_130134423_130135306_130135397_130135499_130135592_130137253_130137303_130138712_130138808_130139891_130139983_130140740_130140841_130141543_130141696_130144409_130144541_130147624_130147703_130148721
67245	chr8	+	1047	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	196	223	-38	-15	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	2	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTTAAACATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	86026513	86034684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
67248	chr7	-	644	5	NNC	ENSMUSG00000003873.12	novel	1100	5	NA	NA	-12	-183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1386.65433688429	2	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTCCTCATATTATGA	9965	False	NA	NA	False	NA	NA	NA	45116272	45112766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45112928_45114612_45114749_45115400_45115548_45115643_45115778_45116206
67251	chr19	+	546	2	Intergenic	novelGene_1263	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTTCCTTTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	41513710	41514914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41513877_41514534
67252	chr6	-	1680	5	NNC	ENSMUSG00000040649.16	novel	3039	5	NA	NA	-2717	-1329	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	70.111964028973	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGGCATGTTTGCATGA	9620	False	NA	NA	False	NA	NA	NA	122446263	122432547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122446180
67255	chr9	+	645	2	Intergenic	novelGene_1032	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	4	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACAGAAAACAGAGGCCAC	NA	False	NA	NA	False	NA	NA	NA	52714598	52725783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_52714783_52725322
67256	chr3	+	1029	2	NNC	ENSMUSG00000063273.12	novel	7480	20	NA	NA	-20	1808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGTTGTGTGAATATTT	NA	False	NA	-85	True	NA	NA	NA	51323416	51381447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_51323561_51380562
67257	chr18	+	680	6	Antisense	novelGene_ENSMUSG00000024352.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	659	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTCCTGCTGCGCGCCTC	8945	False	NA	NA	False	NA	NA	NA	35789734	35795209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35789897_35790000_35790107_35793336_35793406_35793495_35793627_35793843_35793911_35795064
67258	chr13	-	1642	1	Intergenic	novelGene_1359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCAGACCCTTAATCCTC	NA	False	NA	NA	False	NA	NA	NA	46912270	46910628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_46910600_46912300
67260	chr12	-	1109	6	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	5	215	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_5	14.891608375189	1	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACAGTCTCCAGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	4283933	4265142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
67261	chr11	-	465	6	NNC	ENSMUSG00000020460.16	novel	791	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6123.4369303521	5	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	NA	False	NA	NA	NA	29497861	29495845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_29496030_29496290_29496353_29496710_29496789_29497205_29497261_29497680_29497746_29497840
67262	chr1	+	2957	2	Antisense	novelGene_ENSMUSG00000026566.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	86	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTTAACTGGTGACAAA	NA	False	NA	NA	False	NA	NA	NA	165425518	165429386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_165427384_165428294
67263	chr8	+	1068	1	ISM	ENSMUSG00000038872.11	ENSMUST00000220518.2	17152	16	1015272	2647	243272	-2647	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCGAGTGATCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	109684547	109685615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_109684500_109685600
67267	chr4	-	2538	12	NIC	ENSMUSG00002076083.1	novel	2723	12	NA	NA	61	-1	combination_of_known_junctions	TRUE	canonical	0	0	junction_11	24.2227950834104	41	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTGGCCCCCTTTGTA	8642	False	NA	NA	False	NA	NA	NA	156318920	156313792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_156314720_156314961_156315144_156315357_156315432_156315541_156315631_156316003_156316172_156316258_156316404_156316643_156316858_156317085_156317203_156317680_156317903_156318048_156318171_156318259_156318520_156318902
67268	chr3	+	902	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	29	0	29	0	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	134	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	8860	False	NA	NA	False	NA	NA	NA	87856001	87860683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
67269	SIRV4	-	619	2	FSM	SIRV4B	SIRV406	617	2	0	-2	0	2	multi-exon	FALSE	canonical	3	2584	junction_1	0	170	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTAAAAATAGCCTGTTA	NA	False	NA	NA	False	NA	NA	NA	5158	3635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4_-_4104_5007
67272	chr14	+	1483	3	NNC	ENSMUSG00000055717.14	novel	2863	7	NA	NA	35052	-6	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	23.5	50	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAATATCAGCTCACGCA	NA	False	NA	NA	False	NA	NA	NA	103936985	103942337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_103937081_103939952_103940275_103941271
67273	chr17	-	1101	10	NNC	ENSMUSG00000095687.3	novel	1793	9	NA	NA	85	-518	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	337.198406627461	549	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	8366532	8347425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_8347719_8349056_8349132_8350874_8350921_8352237_8352461_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
67274	chr7	-	509	2	NNC	ENSMUSG00000060591.10	novel	655	2	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	46	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	140535894	140534749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140535025_140535660
67275	chr13	+	1127	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	17	-427	17	-15	multi-exon	FALSE	canonical	3	17	junction_1	303	3617	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACTGTTCTTACACTCTG	9300	False	NA	NA	False	NA	NA	NA	73476648	73480282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_73476740_73478978_73479211_73479478
67276	chr5	-	1243	5	ISM	ENSMUSG00000029718.15	ENSMUST00000128755.8	2573	8	714	1581	8	334	internal_fragment	FALSE	canonical	3	423	junction_3	49.443781206538	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACACCATATACATAAAAGA	4816	False	NA	NA	False	NA	NA	NA	137608956	137604945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658
67277	chr2	+	1473	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	43	20	1	-18	multi-exon	FALSE	canonical	3	200	junction_1	20.9105236663265	333	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGCCTTGGTATTAGAA	632	False	NA	NA	False	NA	NA	NA	32647288	32652236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
67278	chr9	-	2168	14	FSM	ENSMUSG00000032527.14	ENSMUST00000149322.8	2188	14	13	7	3	-7	multi-exon	FALSE	canonical	0	0	junction_9	26.8991102116318	2	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACATACTTGGGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	100916917	100864091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
67279	chr17	+	738	3	FSM	ENSMUSG00000073435.11	ENSMUST00000154321.2	450	3	-130	-158	98	-17	multi-exon	FALSE	canonical	3	183	junction_2	7.5	101	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGGTGAAGTTTCAAG	NA	False	NA	NA	False	NA	NA	NA	25115594	25116479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25115928_25116001_25116115_25116187
67280	chr13	+	1055	1	ISM	ENSMUSG00000114442.2	ENSMUST00000224844.2	4257	2	612	3118	593	-3118	mono-exon	FALSE	NA	NA	NA	NA	NA	39	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGCAAGGTGAGCAGACT	NA	False	NA	NA	False	NA	NA	NA	67427252	67428307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_67427300_67428300
67283	chr19	+	1944	2	NNC	ENSMUSG00000033768.18	novel	3285	6	NA	NA	19305	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	6586539	6594189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6586665_6592370
67284	chr17	+	1436	3	NNC	ENSMUSG00000117007.2	novel	1247	3	NA	NA	304	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	72	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCAGACTGGTAAGCAAA	1913	False	NA	NA	False	NA	NA	NA	29276137	29278729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29276565_29276834_29276933_29277818
67285	chr17	+	1071	2	FSM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	48	-8	48	8	multi-exon	FALSE	canonical	3	20	junction_1	0	138	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTATTAGTCCACAGTTC	NA	False	NA	NA	False	NA	NA	NA	36305392	36349335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36305453_36348324
67286	chr4	+	906	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	466	100	131	-100	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACAGCAAGTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	155789722	155818236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
67288	chr12	-	3941	2	ISM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	28	12246	12	2991	5prime_fragment	FALSE	canonical	3	56	junction_1	0	2	165	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGAGGGTCTCCTAGCT	NA	False	NA	NA	False	NA	NA	NA	77008947	76996293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_77000051_77008763
67289	chr4	-	1334	14	ISM	ENSMUSG00000038764.15	ENSMUST00000075637.11	6369	26	31685	35031	30223	-7525	internal_fragment	FALSE	canonical	3	38	junction_4	6.45879062451795	2	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCCTGACCCAGAAGTCA	8780	False	NA	NA	False	NA	NA	NA	57270152	57225871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022
67290	chr17	+	1998	1	ISM	ENSMUSG00000048249.15	ENSMUST00000062519.14	7462	9	58946	42	16894	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	40	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTGTAATTTACAATAAAA	NA	False	NA	NA	False	NA	NA	NA	26993569	26995567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26993600_26995600
67293	chr11	-	1368	5	FSM	ENSMUSG00000025578.10	ENSMUST00000026663.8	3580	5	77	2135	19	613	multi-exon	TRUE	canonical	3	19	junction_4	2.91547594742265	35	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTTCTTTTATTTAAAC	NA	False	NA	NA	False	NA	NA	NA	118931718	118929265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_118930346_118930757_118930825_118930919_118930986_118931173_118931218_118931607
67294	ERCC-00009	+	952	1	FSM	ERCC-00009A	DQ668364	968	1	0	16	0	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	13	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTGCTACCGATAT	NA	False	NA	NA	False	NA	NA	NA	0	952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00009_+_0_1000
67295	chr5	-	3072	1	NIC	ENSMUSG00000029209.16	novel	1894	7	NA	NA	-2	-4219	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	87	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAAAAGCCCTTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	69749634	69746562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_69746600_69749600
67296	chr3	+	1120	4	FSM	ENSMUSG00000036873.14	ENSMUST00000152783.2	514	4	-139	-467	9	35	multi-exon	FALSE	canonical	3	74	junction_3	20.0388511535855	140	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTATTACTGAATGCC	NA	False	NA	NA	False	NA	NA	NA	145643805	145650032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649516
67299	chr7	-	1683	1	FSM	ENSMUSG00000000486.14	ENSMUST00000205570.2	713	1	-25	-945	-25	945	mono-exon	FALSE	NA	NA	NA	NA	NA	30	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	126832327	126830644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126830600_126832300
67300	chr5	-	2325	4	NNC	ENSMUSG00000105987.5	novel	345	4	NA	NA	-726	6037	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7.40870359029762	9	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCCTCTTTTTTATCA	6772	False	NA	NA	False	NA	NA	NA	23916149	23897256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23899439_23905407_23905472_23915363_23915407_23916113
67301	chr6	+	1079	8	ISM	ENSMUSG00000069678.11	ENSMUST00000092614.9	866	9	211	-8	-29	0	3prime_fragment	FALSE	canonical	3	182	junction_2	10.5521058929254	81	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCATCTTCCTTCTTAC	72	False	NA	NA	False	NA	NA	NA	83055581	83057836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
67302	chr11	+	1167	7	NNC	ENSMUSG00000018449.13	novel	1100	7	NA	NA	0	108	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	117.814472795154	770	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGAATGGAGGTGTAACAG	NA	False	NA	NA	False	NA	NA	NA	70861305	70868767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865499_70865867_70868483
67303	chr9	-	2876	1	Antisense	novelGene_ENSMUSG00000032009.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGGAGACCCACAGCCCA	NA	False	NA	NA	False	NA	NA	NA	14240709	14237833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_14237800_14240700
67304	chr16	+	1113	1	NIC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	47	427	mono-exon	FALSE	NA	NA	NA	NA	NA	13	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGTAGTTTCAGATGGT	NA	False	NA	NA	False	NA	NA	NA	18655451	18656564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18655500_18656600
67305	chr16	+	1302	1	NIC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	2188	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTGACACTTTATACC	NA	False	NA	NA	False	NA	NA	NA	18657592	18658894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18657600_18658900
67306	chr1	-	1959	1	Antisense	novelGene_ENSMUSG00000038866.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCCTCCACAGAAGTTAA	NA	False	NA	NA	False	NA	NA	NA	105949033	105947074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_105947100_105949000
67307	chr6	-	949	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	58	0	-4	0	multi-exon	FALSE	canonical	3	23	junction_1	78.3019795407498	66	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	83483893	83457198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
67308	chr10	-	2978	15	NNC	ENSMUSG00000020080.9	novel	3517	18	NA	NA	207	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	4.05321741688889	19	34	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGAGGTATTAAGCTT	NA	False	NA	NA	False	NA	NA	NA	62247376	62218917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62219702_62221456_62221691_62227089_62227246_62229465_62229650_62230933_62231034_62231176_62231273_62234363_62234484_62234568_62234707_62235970_62236276_62237502_62237737_62239270_62239427_62241203_62241388_62244393_62244494_62245568_62245665_62247285
67311	chr19	-	1973	11	Fusion	ENSMUSG00000117839.2_ENSMUSG00000040247.7	novel	2154	11	NA	NA	-3	8	multi-exon	FALSE	canonical	0	0	junction_2	0.781024967590665	50	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCACTCTCCACCCTGGCC	NA	False	NA	NA	False	NA	NA	NA	4242784	4234367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4235073_4235350_4235506_4237940_4238131_4238244_4238311_4238942_4239058_4239211_4239319_4239404_4239513_4239862_4239963_4240662_4240835_4241035_4241200_4242693
67312	chr14	+	1326	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	-1	3	-1	-3	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTAATTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	73747463	73755982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
67315	chr14	-	1398	1	ISM	ENSMUSG00000072294.6	ENSMUST00000228216.2	5890	8	412217	433	27929	-433	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAGAAATAATTTGT	NA	False	NA	NA	False	NA	NA	NA	100109898	100108500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_100108500_100109900
67316	chr18	+	2258	1	NIC	ENSMUSG00000037236.17	novel	555	3	NA	NA	20	-7157	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACTAGAGTTGATTTCT	NA	False	NA	NA	False	NA	NA	NA	35695761	35698019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35695800_35698000
67320	chr10	-	927	7	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	1885	-968	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.489684133745	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCTAGAGCATGGTCACT	969	False	NA	NA	False	NA	NA	NA	77826125	77823748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77823941_77823986_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975
67321	chr2	-	916	4	NNC	ENSMUSG00000027077.8	novel	1761	8	NA	NA	6389	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	60.6758234847749	6	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGCCATGTGTGGCAGTT	4158	False	NA	NA	False	NA	NA	NA	84646607	84641523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84641793_84645634_84645787_84645950_84646066_84646227
67323	chr16	-	1895	7	ISM	ENSMUSG00000022848.9	ENSMUST00000149892.2	1789	8	33709	-568	33709	568	3prime_fragment	FALSE	canonical	3	128	junction_5	12.8636006709716	57	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGAAGTCATTGTATTT	NA	False	NA	NA	False	NA	NA	NA	35555991	35517349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_35518391_35525123_35525307_35539681_35539810_35543122_35543191_35550655_35550765_35554306_35554437_35555755
67324	chr17	-	230	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCGCCCGCCCGCTCCCA	NA	False	NA	NA	False	NA	NA	NA	40158188	40157958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40158000_40158200
67328	chr4	+	880	5	NNC	ENSMUSG00000029038.10	novel	1472	5	NA	NA	38	-95	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	726.134457246039	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAAGTGTCTGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	155789629	155818241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155789795_155799918_155800063_155815781_155815922_155816383_155816503_155817929
67330	chr6	-	2547	5	ISM	ENSMUSG00000055027.18	ENSMUST00000114186.9	3292	9	36764	5	-8615	-5	3prime_fragment	FALSE	canonical	1	2	junction_3	1.58113883008419	5	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGACCTCCTGTGATTC	NA	False	NA	NA	False	NA	NA	NA	71202473	71190930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_71192894_71193711_71193881_71196241_71196406_71197911_71198005_71202315
67331	chr11	-	1110	8	NNC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	-2510	-534	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	478.730975537175	1	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTGTGCTTTATGATTT	NA	False	NA	NA	False	NA	NA	NA	21516717	21507320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_21507569_21508461_21508539_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619
67332	chrX	+	1061	7	NNC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	-2849	-10372	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	782	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGATGCTCCTACCACCCT	NA	False	NA	NA	False	NA	NA	NA	99666493	99669541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99667034_99667188_99667249_99667466_99667565_99668136_99668196_99668400_99668485_99668893_99668993_99669420
67335	chr8	-	1035	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	-7	11	-7	-11	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	1422	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGCTTTTACAGAGTTC	NA	False	NA	NA	False	NA	NA	NA	41870118	41850506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
67336	chr14	-	323	2	Intergenic	novelGene_615	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCGGTCAGCCCGTGTCC	NA	False	NA	NA	False	NA	NA	NA	76440085	76432292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_76432499_76439968
67339	chr2	+	930	1	Intergenic	novelGene_2578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTGATGCCTGCTGGA	5981	False	NA	NA	False	NA	NA	NA	20677850	20678780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_20677800_20678800
67340	chr13	+	1954	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	4	-194	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	206	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATTTCTCCAAGGACTAA	NA	False	NA	NA	False	NA	NA	NA	76328547	76338031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
67341	chr2	-	573	3	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11337	172	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGCACCCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426178	11413669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11413737_11413892_11414110_11425889
67342	chr7	-	732	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	128.971934931597	873	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1936	False	NA	NA	False	NA	NA	NA	139681889	139679382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
67343	chr1	+	772	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	159	94	-28	1	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	1311	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCTTTACATTTGCCT	NA	False	NA	NA	False	NA	NA	NA	165288764	165308689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
67346	chr2	+	1377	7	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	41.9076365356005	14	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	NA	False	NA	NA	NA	24852481	24862175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_24852638_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
67347	chr13	-	2506	8	Antisense	novelGene_ENSMUSG00000038080.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	84	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGCTCGCTGAACTGG	NA	False	NA	NA	False	NA	NA	NA	47238070	47225433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_47225492_47227182_47227318_47227827_47227904_47230856_47230974_47231741_47231867_47232655_47232782_47233915_47234063_47236348
67349	chr13	-	1975	5	ISM	ENSMUSG00000021765.10	ENSMUST00000022287.8	1851	6	2525	-702	-188	22	3prime_fragment	FALSE	canonical	3	13	junction_1	3.63145976158349	16	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCAGCGGTCTCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	114592960	114588803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_114590042_114590815_114591047_114591656_114591882_114592219_114592439_114592898
67350	chr12	-	1301	2	Intergenic	novelGene_4340	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTTGAATTTTTTT	9466	False	NA	NA	False	NA	NA	NA	24758138	24753398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_24754575_24758013
67351	chr6	-	829	4	NNC	ENSMUSG00000030342.9	novel	1228	8	NA	NA	71	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2896.69777505352	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	125471683	125437228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125437690_125441332_125441451_125449371_125449475_125471536
67353	chr9	-	1042	7	Antisense	novelGene_ENSMUSG00000032249.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	232	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTCAACCAGCTCCGCTC	NA	False	NA	NA	False	NA	NA	NA	62285100	62248690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_62248837_62279001_62279150_62279341_62279464_62280760_62280958_62281933_62282032_62284579_62284645_62284834
67354	chr13	+	2452	1	ISM	ENSMUSG00000037933.17	ENSMUST00000048544.14	6309	7	42981	2	1477	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCACATGCGTGCCCTC	NA	False	NA	NA	False	NA	NA	NA	49538041	49540493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_49538000_49540500
67355	chr10	-	1616	2	ISM	ENSMUSG00000112331.2	ENSMUST00000219854.2	1718	4	11657	-215	11657	215	3prime_fragment	FALSE	canonical	0	0	junction_1	0	5	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGCAGAGTCTTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	68858061	68856354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_68857775_68857865
67356	chr9	-	893	8	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	-12	-3	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	375.737641859588	77	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAATGTGTATGGGTCTTG	6319	False	NA	NA	False	NA	NA	NA	57065573	57062327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57062565_57062695_57062873_57063185_57063349_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
67357	chr3	-	1755	1	Genic_Genomic	ENSMUSG00000033882.16	novel	NA	NA	NA	NA	28216	551	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTTAAGGTTTTTATA	NA	False	NA	NA	False	NA	NA	NA	82745738	82743983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_82744000_82745700
67358	chr6	-	3006	9	Antisense	novelGene_ENSMUSG00000005893.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAGAGTACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	92141578	92129853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_92131496_92133552_92133699_92134384_92134479_92135308_92135444_92136191_92136369_92137297_92137421_92138892_92139032_92140099_92140239_92141167
67359	chr7	+	707	1	FSM	ENSMUSG00000030584.15	ENSMUST00000207677.2	3181	1	1805	669	1805	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	11	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTGCCCACAACTGCTT	NA	False	NA	NA	False	NA	NA	NA	29016292	29016999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29016300_29017000
67360	chr19	+	1005	2	NNC	ENSMUSG00000024983.11	novel	1599	4	NA	NA	-11	-14084	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	72	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACAGTGGTTTTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	55304715	55306986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_55304977_55306242
67361	chr7	+	2387	7	ISM	ENSMUSG00000047730.18	ENSMUST00000148946.8	4629	10	4179	1	4179	-1	3prime_fragment	FALSE	canonical	1	1	junction_1	1.10554159678513	5	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTGTGTGTCTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	27804412	27820284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27804634_27805462_27806035_27806345_27806920_27813352_27813553_27816625_27817010_27819744_27820017_27820120
67362	chr1	+	1218	10	NNC	ENSMUSG00000060679.15	novel	1418	11	NA	NA	-47	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	218.30259891114	1	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCGCCCTTTTTTTTTAA	NA	False	NA	-75	True	NA	NA	NA	42901626	42944841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938607_42938710_42942454_42942625_42944564
67363	chr11	+	1192	5	FSM	ENSMUSG00000032615.15	ENSMUST00000102695.4	1306	5	107	7	76	-7	multi-exon	FALSE	canonical	3	45	junction_1	9.12414379544733	143	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATAGCCTGTGCTGTGG	1826	False	NA	NA	False	NA	NA	NA	59739005	59767352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_59739199_59743616_59743718_59751575_59751637_59765378_59765494_59766630
67365	chr10	-	1543	4	Antisense	novelGene_ENSMUSG00000040054.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTCTATAAATGATGGCAG	NA	False	NA	NA	False	NA	NA	NA	127962312	127960189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127960360_127960769_127961052_127961137_127962111_127962194
67366	chr15	+	1540	9	FSM	ENSMUSG00000022332.9	ENSMUST00000022954.7	1887	9	354	-7	53	7	multi-exon	FALSE	canonical	3	281	junction_5	27.0277635034792	82	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTGTGTGAGCTAAC	NA	False	NA	NA	False	NA	NA	NA	68800622	68965368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_68800683_68866900_68867020_68885206_68885324_68889176_68889324_68896548_68896689_68901563_68901760_68921227_68921311_68962982_68963042_68964749
67369	chr14	-	1624	1	Antisense	novelGene_ENSMUSG00000036339.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGGGCCTATATAGTGCT	NA	False	NA	NA	False	NA	NA	NA	48752221	48750597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_48750600_48752200
67370	chr14	-	1577	7	Antisense	novelGene_ENSMUSG00000036339.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCCAGGTTCCGAATCCC	NA	False	NA	NA	False	NA	NA	NA	48750245	48724319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_48724365_48733745_48733919_48737461_48737613_48742701_48742877_48744597_48744652_48746489_48746583_48749359
67372	chr18	-	782	4	ISM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	32722	0	12820	0	3prime_fragment	FALSE	canonical	3	1176	junction_3	174.501830617587	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60949279	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072
67373	chr3	+	584	6	NNC	ENSMUSG00000028167.16	novel	1059	10	NA	NA	0	7983	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	31.9336812785498	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAGGTATGGTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	134987043	134998160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_134987130_134991348_134991429_134994021_134994101_134995315_134995413_134996754_134996864_134998027
67374	chr6	+	1421	2	FSM	ENSMUSG00000030062.8	ENSMUST00000204164.2	673	2	-176	-572	-176	572	multi-exon	FALSE	canonical	3	2619	junction_1	0	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGCTTTTGCTGTACTG	2995	False	NA	NA	False	NA	NA	NA	88078376	88080941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88079203_88080346
67376	chr2	+	1770	8	NIC	ENSMUSG00000038696.15	novel	3018	11	NA	NA	34	29855	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	74.3724768050819	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGAGATAGCCCTGTCAC	NA	False	NA	NA	False	NA	NA	NA	34296816	34453765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_34296861_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066
67377	chr8	-	2853	12	Antisense	novelGene_ENSMUSG00000059854.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	12	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTGAACTTGCCCGTGT	9507	False	NA	NA	False	NA	NA	NA	111336886	111314330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_111314488_111316079_111316250_111319238_111319438_111320293_111320455_111321846_111322130_111324419_111324637_111325588_111325809_111326878_111327036_111327867_111328019_111329791_111330023_111334314_111334540_111336204
67378	chr11	+	1739	15	FSM	ENSMUSG00000060216.16	ENSMUST00000102564.11	1848	15	-10	119	-2	1	multi-exon	FALSE	canonical	3	204	junction_13	22.0579015413562	114	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTGTATGTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	70323468	70331501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
67380	chr16	+	1250	10	FSM	ENSMUSG00000055447.20	ENSMUST00000084838.14	5250	10	75	3925	64	4	multi-exon	FALSE	canonical	3	19	junction_2	24.0960014099978	82	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATCCCATTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	49676082	49731448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49731231
67381	chr14	-	957	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5083	-229	at_least_one_novel_splicesite	FALSE	canonical	3	300	junction_3	34.2669260690571	1	38	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGACCTGGACTGCTCAAG	NA	False	NA	NA	False	NA	NA	NA	59608002	59586730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
67383	chr7	+	1421	1	Antisense	novelGene_ENSMUSG00000006019.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	58	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAAAATGAACGGAATGT	NA	False	NA	NA	False	NA	NA	NA	15951688	15953109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_15951700_15953100
67384	chr4	+	1873	6	NNC	ENSMUSG00000028976.11	novel	3158	14	NA	NA	-29	-2	intron_retention	FALSE	canonical	0	0	junction_1	1.67332005306815	16	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCATGCAACTGGCTCAA	NA	False	NA	NA	False	NA	NA	NA	150223980	150228624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150224009_150224087_150224276_150224386_150224498_150225215_150225318_150226634_150226711_150227256
67385	chr15	-	2268	18	Antisense	novelGene_ENSMUSG00000099267.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	6	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCCCGGCCTCGGCGCC	NA	False	NA	NA	False	NA	NA	NA	78778764	78761767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_78761818_78765237_78765322_78766323_78766402_78767465_78767564_78768281_78768408_78769454_78769555_78770061_78770143_78772308_78772447_78772613_78772698_78773200_78773308_78773912_78774067_78775634_78775700_78776111_78776286_78776651_78776840_78777364_78777535_78777736_78777848_78777931_78778205_78778577
67388	chr2	+	552	1	Antisense	novelGene_ENSMUSG00000036160.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGGTCCTGGGGAAGC	NA	False	NA	NA	False	NA	NA	NA	26781722	26782274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_26781700_26782300
67389	chr9	-	1351	2	Antisense	novelGene_ENSMUSG00000093803.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	11	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTATTAAAAAAAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	124204827	124202472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_124203757_124204760
67392	chr4	-	646	6	Antisense	novelGene_ENSMUSG00000082941.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1331	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGGCCCTGGCCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	107137130	107111088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_107111191_107119661_107119774_107130806_107130916_107132418_107132487_107135121_107135166_107136919
67393	chr12	+	2998	14	NNC	ENSMUSG00000021108.19	novel	3634	15	NA	NA	-31102	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	3.36532966988113	6	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTGAGAAGAGTGATTT	NA	False	NA	NA	False	NA	NA	NA	73664592	73824959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_73664775_73696065_73696130_73738321_73738473_73739705_73739741_73742960_73743050_73744690_73744821_73746954_73747083_73749211_73749356_73749512_73749687_73768509_73768665_73805659_73805799_73806326_73806516_73822163_73822308_73823685
67394	chr19	-	975	7	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-36	-651	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	445.345808208508	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCTGGTGGTGAGCCCG	NA	False	NA	NA	False	NA	NA	NA	7183635	7176225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176605_7176736_7176932_7177027_7177091_7177318_7177427_7181422_7181522_7181754_7181817_7183566
67395	chrX	-	1243	1	FSM	ENSMUSG00000067925.5	ENSMUST00000088779.5	1195	1	-48	0	-48	0	mono-exon	FALSE	NA	NA	NA	NA	NA	153	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTCTTACTTAGTATAG	NA	False	NA	NA	False	NA	NA	NA	52645697	52644454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_52644500_52645700
67396	chr12	-	1048	3	Intergenic	novelGene_4298	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	15	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACAGGCCCCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	18218831	17965834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_17965873_18101089_18102050_18218781
67397	chrX	-	1236	1	ISM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	57626	216	57554	20	mono-exon	FALSE	NA	NA	NA	NA	NA	13	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGTTGTAAAATCAAGT	NA	False	NA	NA	False	NA	NA	NA	73071649	73070413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_73070400_73071600
67401	chr7	-	810	3	NNC	ENSMUSG00000030980.18	novel	690	3	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	295.5	134	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTTTGAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	118454907	118441439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118441620_118451995_118452564_118454845
67402	chr5	-	1531	6	NNC	ENSMUSG00000025856.16	novel	2060	6	NA	NA	-11	122	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	149.420212822764	5	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTATCCATTATTTCTGA	NA	False	NA	NA	False	NA	NA	NA	138980719	138962148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138962983_138964976_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
67403	chr16	+	1798	1	NIC	ENSMUSG00000014075.16	novel	838	5	NA	NA	-18	-7521	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGACTTAGGTAGTGAAA	NA	False	NA	NA	False	NA	NA	NA	32238594	32240392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_32238600_32240400
67404	chr5	-	1209	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	52	92	-41	-92	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCGGCAGGAGCCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	137074937	137063938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
67405	chr1	+	1484	4	ISM	ENSMUSG00000025921.8	ENSMUST00000027053.8	3587	6	22390	1335	-2338	-148	3prime_fragment	FALSE	canonical	3	13	junction_1	1.4142135623731	15	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTACTATGAACTACTATG	NA	False	NA	NA	False	NA	NA	NA	16198387	16202623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_16198488_16199419_16199566_16201298_16201431_16201517
67406	chr15	+	760	2	ISM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	19924	3	-4215	-3	3prime_fragment	FALSE	canonical	3	1362	junction_1	0	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTTGTGCCTGTGTGGA	NA	False	NA	NA	False	NA	NA	NA	79995458	79997639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_79995946_79997366
67407	chr3	-	685	5	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	45	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5070.83624143987	3	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049964	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045381_86046438_86046534_86048526_86048734_86049004_86049109_86049814
67408	chr4	+	3162	1	Intergenic	novelGene_1979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	84	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAATTCTCCAGGATAAG	NA	False	NA	NA	False	NA	NA	NA	133455940	133459102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_133455900_133459100
67409	chr12	+	1147	2	Antisense	novelGene_ENSMUSG00000059436.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATGCAATATGAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76984512	76986866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_76985534_76986740
67410	chr5	+	894	8	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	22.6445470302252	148	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4351	False	NA	NA	False	NA	NA	NA	118174078	118199935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
67411	chr10	+	514	2	NNC	ENSMUSG00000003072.16	novel	1410	5	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	55	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	4488	False	NA	NA	False	NA	NA	NA	79978191	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79978366_79981307
67412	chrX	-	973	1	Intergenic	novelGene_3953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTGTGTAGCCCTGGC	NA	False	NA	NA	False	NA	NA	NA	71974602	71973629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_71973600_71974600
67413	chr10	+	2011	3	ISM	ENSMUSG00000044770.15	ENSMUST00000127675.2	2214	4	7081	-582	7081	533	3prime_fragment	FALSE	canonical	1	2	junction_2	0.5	2	64	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTTTGTTACATATACAC	NA	False	NA	NA	False	NA	NA	NA	42822957	42835299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_42823138_42831884_42832031_42833614
67414	chr16	-	1120	2	NNC	ENSMUSG00000022814.7	novel	3283	5	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGTCTCCTGCCTCTGC	8675	False	NA	NA	False	NA	NA	NA	33787373	33775149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33776090_33787193
67415	chr8	+	1610	1	Intergenic	novelGene_1635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCGGGCGTGGTGGCGCA	NA	False	NA	NA	False	NA	NA	NA	43806968	43808578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43807000_43808600
67416	chr7	-	2279	1	FSM	ENSMUSG00000101609.3	ENSMUST00000185789.3	93092	1	17198	73615	17198	-73615	mono-exon	FALSE	NA	NA	NA	NA	NA	7	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	142833088	142830809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_142830800_142833100
67417	chr2	-	1009	4	FSM	ENSMUSG00000026939.13	ENSMUST00000150165.8	975	4	-31	-3	-9	3	multi-exon	FALSE	canonical	3	30	junction_2	9.10433352249844	266	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGCTCTGAAGCAATTAA	NA	False	NA	NA	False	NA	NA	NA	25512006	25510112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619
67418	chr10	-	805	9	Antisense	novelGene_ENSMUSG00000054708.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTGCTTCATGGCGAAC	8123	False	NA	NA	False	NA	NA	NA	81474567	81469563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81469588_81470498_81470584_81470693_81470830_81470903_81470997_81471526_81471590_81472207_81472258_81473899_81473971_81474101_81474210_81474392
67419	chr12	-	651	1	ISM	ENSMUSG00000047415.13	ENSMUST00000110066.8	3223	3	30863	3	22070	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCAGAGTGTGTGCAGTC	NA	False	NA	NA	False	NA	NA	NA	100843594	100842943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_100842900_100843600
67420	chr19	-	2766	2	NNC	ENSMUSG00000067279.4	novel	2725	2	NA	NA	-2	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	19	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAAAGACCCGAGAATGT	NA	False	NA	NA	False	NA	NA	NA	36714055	36709139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_36711759_36713908
67421	chr3	-	789	1	Intergenic	novelGene_3109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAAAGTGTAAATTTCCC	3004	False	NA	NA	False	NA	NA	NA	41464373	41463584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41463600_41464400
67423	chr7	+	920	7	NNC	ENSMUSG00000030588.13	novel	1153	8	NA	NA	5597	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	563.999310480272	1	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACTTCTGACCGGCAGAG	NA	False	NA	NA	False	NA	NA	NA	28943548	28946961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28943677_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
67424	chr7	-	2677	9	ISM	ENSMUSG00000041343.20	ENSMUST00000118157.8	2782	12	44	20451	4	303	5prime_fragment	FALSE	canonical	2	4	junction_3	3.40725329260975	9	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAACAATCAGGACTCGA	NA	False	NA	NA	False	NA	NA	NA	92286306	92253841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_92254589_92259752_92259859_92261950_92262077_92263559_92263761_92268755_92268892_92273175_92273296_92274978_92275087_92280706_92280871_92285337
67425	chr2	+	1487	2	NNC	ENSMUSG00000008226.15	novel	658	5	NA	NA	-63	1309	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTGTGAGGACTCCCCGT	NA	False	NA	NA	False	NA	NA	NA	73149680	73153675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_73149844_73152351
67427	chr9	+	984	7	NNC	ENSMUSG00000032249.15	novel	2113	7	NA	NA	46	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	199.043895214654	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTGGGGGGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	62248656	62285053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_62248837_62279001_62279101_62279334_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
67428	chr11	-	908	2	ISM	ENSMUSG00000020918.15	ENSMUST00000153526.8	2946	18	6370	6	6370	-6	intron_retention	FALSE	canonical	3	585	junction_1	0	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGTGTGATTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100596629	100595577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_100596258_100596401
67429	chr11	+	625	6	NNC	ENSMUSG00000069744.8	novel	766	6	NA	NA	-13	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1622.55963218613	73	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCTGCCTGCCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	97594246	97604325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97594317_97594613_97594799_97597623_97597691_97602004_97602106_97603262_97603358_97604218
67431	chr2	-	1882	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	10	2	0	1	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	148	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTATTTT	NA	False	NA	NA	False	NA	NA	NA	109108625	108922643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
67432	chr14	-	1727	3	ISM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	3336	24	-29	-24	3prime_fragment	FALSE	canonical	3	35	junction_2	1.5	63	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGTCATTATTTTAAAGA	9701	False	NA	NA	False	NA	NA	NA	46624790	46621000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_46622170_46623171_46623552_46624612
67433	chr14	+	713	5	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2714.38781081481	3	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTAAGAACTCTTTGCTG	1073	False	NA	NA	False	NA	NA	NA	76082767	76085736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082901_76083056_76083131_76083642_76083834_76084683_76084801_76085538
67434	chr14	-	1344	16	NIC	ENSMUSG00000021820.19	novel	3564	19	NA	NA	7	130	combination_of_known_junctions	FALSE	canonical	1	2	junction_13	9.69444285259458	1	36	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGACCCTAGTTACCTCT	NA	False	NA	NA	False	NA	NA	NA	20844110	20788849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20829271_20829332_20842586_20842682_20843968
67435	chr9	-	712	1	NIC	ENSMUSG00000032026.8	novel	1077	7	NA	NA	2987	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATGCAACCCTTCGGCA	7845	False	NA	NA	False	NA	NA	NA	48380533	48379821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_48379800_48380500
67436	chr4	+	1579	12	Antisense	novelGene_ENSMUSG00000028842.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	13	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTACAGGTTGTGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	126241568	126270796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_126241661_126243976_126244112_126244642_126244846_126247475_126247565_126248798_126248959_126257438_126257630_126261445_126261572_126262269_126262398_126264053_126264174_126265258_126265409_126265531_126265622_126270701
67439	chr7	-	2556	3	FSM	ENSMUSG00000032860.6	ENSMUST00000037540.5	3011	3	0	455	0	5	multi-exon	FALSE	canonical	2	2	junction_1	4	13	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAACTGGTTCTTTTTT	3103	False	NA	NA	False	NA	NA	NA	100661205	100646229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_100648308_100652770_100652962_100660918
67442	chr17	+	910	5	NIC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	98.3142283700584	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGGCCCGTTGGCTTC	907	False	NA	NA	False	NA	NA	NA	24851654	24857812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24851829_24852900_24853140_24854561_24854722_24857397_24857504_24857581
67444	chr3	+	2624	1	ISM	ENSMUSG00000027500.11	ENSMUST00000191847.2	3413	3	36249	386	-14502	-386	mono-exon	FALSE	NA	NA	NA	NA	NA	2	104	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAATTATAGGCAATAA	NA	False	NA	NA	False	NA	NA	NA	8610823	8613447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_8610800_8613400
67445	chr1	-	2624	1	Genic_Genomic	ENSMUSG00000022995.17	novel	NA	NA	NA	NA	-445	-56115	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTCAGGTCATGCTCT	2874	False	NA	NA	False	NA	NA	NA	181842414	181839790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_181839800_181842400
67446	chr17	+	1905	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13569	-799	3780	4	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	87	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCTCCGTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	32701004	32712252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
67447	chr10	+	2528	1	Intergenic	novelGene_3511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCGAAACCCCTGTGTGGC	NA	False	NA	NA	False	NA	NA	NA	95132617	95135145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_95132600_95135100
67448	chr7	-	2304	17	ISM	ENSMUSG00000030592.19	ENSMUST00000214374.2	15300	109	45213	65661	-7725	-6	internal_fragment	FALSE	canonical	1	2	junction_1	2.54644359843292	6	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGGTGAGCTTTCAAGG	2130	False	NA	NA	False	NA	NA	NA	28779227	28768429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28768565_28768984_28769075_28769256_28769336_28769444_28769609_28769980_28770122_28770993_28771085_28771180_28771402_28772189_28772360_28772443_28772565_28774020_28774130_28774215_28774403_28774588_28774725_28775594_28775690_28776225_28776359_28776447_28776563_28777943_28778218_28779184
67449	chr8	+	2387	4	NNC	ENSMUSG00000037134.18	novel	2781	12	NA	NA	11795	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.9178909867358	15	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCATGTTAAAAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	78302085	78307949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_78303259_78303316_78304121_78307254_78307378_78307662
67450	chr13	-	1046	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	-56	40	-56	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	1	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTTTAAGTCTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97235801	97234755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97234800_97235800
67451	chr17	-	1994	3	NNC	ENSMUSG00000023980.8	novel	1692	7	NA	NA	1482	3621	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGGGCGTGGTAGTGC	209	False	NA	NA	False	NA	NA	NA	47811715	47808449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47809648_47809691_47810359_47811586
67452	chr2	+	1904	2	NNC	ENSMUSG00000044647.17	novel	1056	3	NA	NA	13	-30514	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	11	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGTAAACTAAAAGAATAAA	5704	False	NA	NA	False	NA	NA	NA	65676211	65678648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_65676229_65676761
67453	chr7	-	503	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_2	2	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGATTTGTATATACT	NA	False	NA	NA	False	NA	NA	NA	79047983	79046167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_79046493_79047383_79047471_79047892
67454	chr11	-	3008	11	NNC	ENSMUSG00000040548.17	novel	4934	12	NA	NA	-264	-302	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	48.2062236645851	1	155	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTCCTCAGTGGCAAGC	NA	False	NA	NA	False	NA	NA	NA	106458200	106393520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410759_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790
67455	chr13	-	1261	6	NNC	ENSMUSG00000021731.11	novel	3319	5	NA	NA	18	-1731	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	780.334543641379	199	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAACTACATTTGT	NA	False	NA	NA	False	NA	NA	NA	118523770	118516647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769_118521916_118523187_118523361_118523669
67456	chr17	+	983	5	FSM	ENSMUSG00000024191.16	ENSMUST00000137989.2	818	5	-69	-96	-2	0	multi-exon	FALSE	canonical	2	4	junction_2	37.8615900352851	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	2017	False	NA	NA	False	NA	NA	NA	27000062	27011495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27000151_27002418_27002512_27008668_27008771_27009899_27010019_27010914
67457	chr18	-	470	1	FSM	ENSMUSG00000044982.8	ENSMUST00000054984.8	2727	1	1195	1062	1195	-1062	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATTAAACAGTAAATTTAA	NA	False	NA	NA	False	NA	NA	NA	32043682	32043212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_32043200_32043700
67458	chr3	-	2709	1	Antisense	novelGene_ENSMUSG00000025766.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAGTTTCCATACAAAAAA	8871	False	NA	NA	False	NA	NA	NA	41699889	41697180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_41697200_41699900
67460	chr12	-	2635	1	Antisense	novelGene_ENSMUSG00000034574.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCCGTCAGATATCAGATA	NA	False	NA	NA	False	NA	NA	NA	72027572	72024937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_72024900_72027600
67461	chr5	-	1307	2	FSM	ENSMUSG00000072694.9	ENSMUST00000112160.4	1333	2	22	4	-9	-4	multi-exon	FALSE	canonical	3	46	junction_1	0	130	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGATCCTGTCTGCTGTTCT	741	False	NA	NA	False	NA	NA	NA	114952015	114946260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114947393_114951840
67462	chr16	-	921	6	NIC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	13	-1	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	113.851833538156	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTTGTATGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	16942991	16931263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16938819_16938944_16939159_16939416_16942853
67463	chr7	-	903	6	FSM	ENSMUSG00000033916.6	ENSMUST00000210587.2	930	6	23	4	16	0	multi-exon	FALSE	canonical	3	206	junction_5	1091.38616447159	371	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7114	False	NA	NA	False	NA	NA	NA	12768555	12765940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768428
67464	chr3	-	1624	8	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	3	0	intron_retention	FALSE	canonical	0	0	junction_2	334.586250739138	1	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6157	False	NA	NA	False	NA	NA	NA	153618589	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613842_153614426_153614553_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
67465	chr7	+	560	1	Intergenic	novelGene_2920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTCTAAGACAAACTCG	NA	False	NA	NA	False	NA	NA	NA	29839613	29840173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_29839600_29840200
67466	chr3	+	785	1	Intergenic	novelGene_3094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAACCACAATCTCTATGA	6967	False	NA	NA	False	NA	NA	NA	34076364	34077149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_34076400_34077100
67467	chr14	+	2681	1	FSM	ENSMUSG00000075502.3	ENSMUST00000100359.3	2982	1	298	3	298	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAGATCAGAGTTCGTAT	NA	False	NA	NA	False	NA	NA	NA	79689572	79692253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_79689600_79692300
67468	chr3	-	986	3	FSM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	37	3	37	-3	multi-exon	FALSE	canonical	3	42	junction_1	94	144	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTTCTCATGGTCATG	NA	False	NA	-77	True	NA	NA	NA	75563001	75554755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_75555246_75556106_75556298_75562696
67469	chrX	-	1753	9	NNC	ENSMUSG00000031220.15	novel	1984	8	NA	NA	-51435	-269	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_7	4.92442890089805	19	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTCCAGCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	99537758	99446100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_99446547_99446745_99446946_99447736_99447912_99448134_99448340_99448564_99448636_99449191_99449303_99467905_99468055_99488875_99489014_99537500
67470	chr7	+	2215	3	FSM	ENSMUSG00000031074.15	ENSMUST00000105898.2	2299	3	80	4	80	-4	multi-exon	FALSE	canonical	3	54	junction_2	3.5	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTAAAGAACCATATGGTT	NA	False	NA	NA	False	NA	NA	NA	144392411	144398169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_144392665_144394407_144394512_144396311
67471	chr15	-	1206	9	NNC	ENSMUSG00000022451.13	novel	3025	9	NA	NA	1567	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	176.370171797841	91	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTGAGTTGTGTATGTT	NA	False	NA	NA	False	NA	NA	NA	94486193	94475836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_94475898_94477590_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108
67472	chr11	+	750	5	NIC	ENSMUSG00000020492.12	novel	861	5	NA	NA	4	-165	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	84.7481563221289	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTGCCAGTAAAATTC	NA	False	NA	NA	False	NA	NA	NA	87000063	87015295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759_87012966_87015082
67473	chr16	+	891	8	NIC	ENSMUSG00000022681.16	novel	1014	9	NA	NA	8	-11	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	230.175975270741	131	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCAAAGGCAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	13637215	13653301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_13637301_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
67474	chr4	+	1130	7	NNC	ENSMUSG00000006392.17	novel	1134	7	NA	NA	0	-46	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	273.920558232167	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCAATTCTGGGTCTT	NA	False	NA	NA	False	NA	NA	NA	118266551	118272260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118266584_118268081_118268201_118268894_118269012_118269498_118269690_118269860_118269943_118270823_118271073_118271920
67475	chr7	-	1455	11	NNC	ENSMUSG00000002981.11	novel	3107	13	NA	NA	-3	-423	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	466.689661338239	1	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTTCCCTTGCCCAACC	5157	False	NA	NA	False	NA	NA	NA	19398949	19369303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19380014_19380640_19380765_19389642_19389756_19398858
67476	chr5	-	120	1	Intergenic	novelGene_967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCCAAGCAATCCGACTC	NA	False	NA	NA	False	NA	NA	NA	146198064	146197944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_146197900_146198100
67477	chr7	+	1521	5	FSM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	61	10	-10	3	multi-exon	FALSE	canonical	3	159	junction_1	63.711753232822	105	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGAGTTCGTGTTGTGT	1461	False	NA	NA	False	NA	NA	NA	44498708	44504835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362_44503533_44504015
67479	chr17	+	559	2	ISM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	18985	7	18943	-7	3prime_fragment	FALSE	canonical	3	1134	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAAATCTGGCTCCAGTG	NA	False	NA	NA	False	NA	NA	NA	26914328	26918614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26914459_26918185
67480	chr11	+	707	6	NNC	ENSMUSG00000018286.7	novel	798	6	NA	NA	4	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2339.24488671024	45	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTGTGTGAAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	70416196	70418479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417429_70418043_70418150_70418262
67482	chr15	-	1561	1	Genic_Genomic	ENSMUSG00000005360.15	novel	NA	NA	NA	NA	28412	905	mono-exon	FALSE	NA	NA	NA	NA	NA	13	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTGGTTGCACATA	87	False	NA	NA	False	NA	NA	NA	8710660	8709099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_8709100_8710700
67483	chr8	+	1650	8	ISM	ENSMUSG00000031486.16	ENSMUST00000033876.14	5760	19	298	10426	298	-8613	5prime_fragment	FALSE	canonical	3	17	junction_4	4.03049599419025	46	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAAAACAATCAGCATA	NA	False	NA	NA	False	NA	NA	NA	27575923	27603038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_27576240_27588813_27588886_27599355_27599428_27599728_27599801_27599968_27600041_27600462_27600627_27601079_27601294_27602370
67484	chr7	-	1776	4	Antisense	novelGene_ENSMUSG00000108825.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCACACAGGTTCTGCT	NA	False	NA	NA	False	NA	NA	NA	83284043	83281224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83281348_83281943_83281998_83282341_83283856_83283958
67485	chr2	-	1678	7	NNC	ENSMUSG00000015787.16	novel	1811	6	NA	NA	51	-213	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	1.7950549357115	30	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAGTATAGGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	26746759	26732727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26733887_26735967_26736103_26736585_26736622_26738262_26738320_26738932_26739003_26746433_26746565_26746669
67487	chr18	-	1231	3	ISM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	7067	5529	834	-4247	internal_fragment	FALSE	canonical	3	6113	junction_1	55.5	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAAAGTGCTTTTAGTC	7266	False	NA	NA	False	NA	NA	NA	35080343	35075995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_35076339_35078996_35079090_35079548
67488	chr3	-	1354	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	236	6	236	-4	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACAGCTTTGTGGGTATT	NA	False	NA	NA	False	NA	NA	NA	151871631	151799481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
67489	chr5	-	1081	3	NNC	ENSMUSG00000041548.5	novel	1816	3	NA	NA	5513	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5	32	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGATGTTCTTAGCATGT	NA	False	NA	NA	False	NA	NA	NA	116548438	116546566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116547008_116547118_116547550_116548229
67490	chr15	+	1045	5	NNC	ENSMUSG00000033020.8	novel	885	5	NA	NA	28	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	894.701451602712	10	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCCCCGTTACCTGCGT	NA	False	NA	NA	False	NA	NA	NA	79025593	79035970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79025635_79028793_79028864_79030252_79030384_79034986_79035608_79035788
67491	chr15	+	1097	7	NNC	ENSMUSG00000001285.13	novel	1480	7	NA	NA	5	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	187.999778368664	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTCTAACTGACCCAGTC	5932	False	NA	NA	False	NA	NA	NA	102240148	102246277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102240389_102240524_102240638_102242636_102242797_102245347_102245420_102245535_102245659_102245763_102245946_102246070
67492	chr14	+	845	1	Antisense	novelGene_ENSMUSG00000062611.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCGACTGGAGAGCCAAA	NA	False	NA	NA	False	NA	NA	NA	88360400	88361245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_88360400_88361200
67493	chr11	-	979	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	26	-87	24	87	multi-exon	FALSE	canonical	3	382	junction_1	0	1695	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTACCATTACAACTGGCT	NA	False	NA	NA	False	NA	NA	NA	29465007	29462788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29463677_29464916
67494	chr2	+	799	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	32	125	32	-125	multi-exon	FALSE	canonical	3	586	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGGTTATATACTGGT	NA	False	NA	NA	False	NA	NA	NA	148514577	148517822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_148514756_148517201
67495	chr8	+	961	8	NIC	ENSMUSG00000031813.9	novel	1062	9	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_2	138.39075113605	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGAGTGTATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	71995577	72000670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71995702_71995776_71995876_71997867_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
67496	chr1	+	1831	14	Antisense	novelGene_ENSMUSG00000100394.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCCGCCATCTTCCTCTCC	3884	False	NA	NA	False	NA	NA	NA	152721953	152778373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_152722012_152724480_152724767_152725624_152725750_152728351_152728410_152730060_152730134_152731600_152731754_152732199_152732365_152734631_152734766_152735102_152735252_152736198_152736273_152737431_152737604_152742331_152742465_152744002_152744127_152778246
67497	chr11	+	1165	8	NNC	ENSMUSG00000040963.16	novel	672	5	NA	NA	-1590	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	15.9885162870488	54	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTAGCCTGGTTGTTT	5400	False	NA	NA	False	NA	NA	NA	69986927	69997013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69987005_69987627_69987745_69988004_69988101_69988645_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
67499	chr16	+	1503	4	ISM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	-30	5	0	-5	intron_retention	TRUE	canonical	3	70	junction_3	17.4547032821147	90	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATTTGGCTGGTTTATA	NA	False	NA	NA	False	NA	NA	NA	16964812	16966705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660
67500	chr11	+	1782	12	NIC	ENSMUSG00000018906.15	novel	1997	3	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	24.1373480367652	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	NA	False	NA	NA	NA	54004036	54022478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_54004156_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
67501	chr19	-	2118	1	ISM	ENSMUSG00000039652.17	ENSMUST00000079754.11	5899	11	183834	219	150468	-213	mono-exon	FALSE	NA	NA	NA	NA	NA	8	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAAAGGTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	37001027	36998909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_36998900_37001000
67502	chr16	-	1025	2	FSM	ENSMUSG00000097318.3	ENSMUST00000231849.2	665	2	-48	-312	4	312	multi-exon	FALSE	canonical	3	19	junction_1	0	275	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTGCATATTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	33201093	33199911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33200729_33200885
67504	chr12	+	2002	8	ISM	ENSMUSG00000037679.10	ENSMUST00000222275.2	2795	15	3835	3	3835	-3	3prime_fragment	FALSE	canonical	1	1	junction_2	1.66598625567009	31	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGAGTGTGGTATTTAGA	NA	False	NA	NA	False	NA	NA	NA	112574925	112581988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_112575019_112575281_112575353_112576106_112576228_112576552_112576718_112576895_112576999_112577128_112577291_112577843_112578471_112581328
67505	chr7	+	1360	7	Antisense	novelGene_ENSMUSG00000030530.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGCAGAAGCCGAGGTGC	111	False	NA	NA	False	NA	NA	NA	80040361	80042669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_80041045_80041255_80041363_80041471_80041607_80041941_80042117_80042217_80042338_80042423_80042526_80042631
67508	chrX	+	1536	1	ISM	ENSMUSG00000048047.4	ENSMUST00000049740.3	5122	2	5706	12	5665	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	38	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTCTAATTTCTGAG	NA	False	NA	NA	False	NA	NA	NA	37284375	37285911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_37284400_37285900
67509	chr17	-	1233	11	Fusion	ENSMUSG00000116560.2_ENSMUSG00000116868.2	novel	985	8	NA	NA	11621	-11884	multi-exon	FALSE	non_canonical	0	0	junction_8	18.4447824600888	5	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTGGCAGTTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	6838481	6791073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_6791227_6792929_6793075_6795963_6796109_6803306_6803476_6809624_6809760_6812795_6812921_6815627_6815707_6817281_6817358_6819117_6819159_6831826_6831892_6838381
67511	chr9	-	167	1	Intergenic	novelGene_1048	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAGTTTACTCTCAGAGT	7507	False	NA	NA	False	NA	NA	NA	56844527	56844360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_56844400_56844500
67514	chr6	-	1104	6	FSM	ENSMUSG00000025889.14	ENSMUST00000114268.5	1280	6	170	6	38	-6	multi-exon	FALSE	canonical	2	14	junction_1	4.2614551505325	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCAAAATCTTTCCTGG	7744	False	NA	NA	False	NA	NA	NA	60805818	60708568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60805707
67515	chr5	+	1469	1	FSM	ENSMUSG00000049327.18	ENSMUST00000196860.2	1271	1	-9	-189	9	189	mono-exon	FALSE	NA	NA	NA	NA	NA	10	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTATGGATGGTTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	124578038	124579507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124578000_124579500
67517	chr9	-	397	1	Intergenic	novelGene_1023	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGCAGCAAGGAACCAC	7241	False	NA	NA	False	NA	NA	NA	44331035	44330638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_44330600_44331000
67518	chr4	+	821	4	NNC	ENSMUSG00000028676.18	novel	3058	6	NA	NA	-6	-199	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	730.12571215891	27	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATTAAGACTATAAATAGA	4680	False	NA	NA	False	NA	NA	NA	135583416	135590775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585719_135589081_135589189_135590350
67519	chr9	-	845	5	ISM	ENSMUSG00000032431.7	ENSMUST00000084881.5	1674	7	5932	11	5932	5	3prime_fragment	FALSE	canonical	3	595	junction_4	28.9169068193678	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATTTCTTTGGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	114213811	114204212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_114204651_114207107_114207192_114208977_114209124_114210653_114210783_114213763
67520	chr4	-	1256	8	NNC	ENSMUSG00000028961.16	novel	2218	13	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.742172895601	21	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTTCTTTGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	149251115	149234449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149234996_149242417_149242553_149244523_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
67523	chr4	+	1000	7	Antisense	novelGene_ENSMUSG00000028800.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACCTAACCGGTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	129410030	129412863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129410429_129410691_129410743_129411150_129411309_129411590_129411716_129411806_129411921_129412629_129412764_129412843
67524	chr13	-	1020	3	FSM	ENSMUSG00000021760.6	ENSMUST00000022282.6	1042	3	22	0	5	0	multi-exon	FALSE	canonical	3	23	junction_2	4	119	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGCATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	113182922	113179292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_113179834_113181965_113182228_113182705
67525	chr15	-	740	4	Antisense	novelGene_ENSMUSG00000022587.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	218	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGCGGGCTGCAGGCGGG	7902	False	NA	NA	False	NA	NA	NA	74831177	74827465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_74827565_74829623_74829725_74830115_74830237_74830758
67528	chr17	-	658	5	NIC	ENSMUSG00000052146.17	novel	887	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	4719	junction_4	883.227709880074	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	NA	NA	NA	27854212	27849395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853450_27854177
67529	chr19	-	1810	6	ISM	ENSMUSG00000024908.16	ENSMUST00000223919.2	2237	14	1	33176	1	543	5prime_fragment	FALSE	canonical	3	145	junction_5	129.618825793169	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGTTTTTTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	3625736	3560951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3625640
67530	chr1	+	2251	6	NNC	ENSMUSG00000047443.15	novel	2815	8	NA	NA	39	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	12.3709336753537	21	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGGCATTCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	91294190	91301936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_91294210_91297948_91298065_91298136_91298246_91298346_91298438_91299103_91299183_91300099
67531	chr7	+	1307	6	NNC	ENSMUSG00000055193.5	novel	845	5	NA	NA	-2043	440	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.5298221281347	16	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATAAGCCTTAAAGCAGC	1039	False	NA	NA	False	NA	NA	NA	43581120	43589503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43581146_43583166_43583235_43586828_43586980_43587764_43588049_43588168_43588306_43588861
67532	chr4	-	1317	8	ISM	ENSMUSG00000073758.11	ENSMUST00000152402.8	2071	12	821	468	821	-468	internal_fragment	FALSE	canonical	3	10	junction_2	2.1189138534559	29	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGAAGAGGTGGGGTT	2849	False	NA	NA	False	NA	NA	NA	126055573	126044868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527
67533	chr13	-	1375	11	ISM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	10013	9	-197	-9	3prime_fragment	FALSE	canonical	0	0	junction_5	57.4272583360898	128	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAAGAATCTGTGTGATC	NA	False	NA	NA	False	NA	NA	NA	58411989	58381168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755
67534	chr5	+	1582	5	ISM	ENSMUSG00000029605.17	ENSMUST00000183291.2	1837	6	1790	10	1790	-5	3prime_fragment	FALSE	canonical	0	0	junction_1	1.08972473588517	8	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAAAATTTGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	120952492	120962218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_120952768_120955677_120955863_120959258_120959492_120960171_120960326_120961483
67535	chr11	-	640	1	FSM	ENSMUSG00000049755.15	ENSMUST00000065533.3	2619	1	41	1938	33	-1938	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAGGGATAGTGTATTGA	NA	False	NA	NA	False	NA	NA	NA	58221124	58220484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_58220500_58221100
67536	chr5	-	1701	7	NIC	ENSMUSG00000029127.16	novel	2978	8	NA	NA	0	-6	combination_of_known_junctions	TRUE	canonical	2	6	junction_5	13.6961065027012	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATATAATGTTTTATATT	NA	False	NA	NA	False	NA	NA	NA	38377775	38357598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38367961_38368009_38373790_38373958_38377666
67537	chr19	+	880	1	FSM	ENSMUSG00000072437.5	ENSMUST00000088237.6	3928	1	1194	1854	1194	-1854	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTAACTCCCTCTTGGTGG	NA	False	NA	NA	False	NA	NA	NA	60745618	60746498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_60745600_60746500
67538	chr14	+	701	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	84	1137	-13	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	4198712	4200736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
67539	chr18	-	1180	1	NIC	ENSMUSG00000060275.15	novel	3056	10	NA	NA	-844	-25153	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTGCTTAGCATGCAC	NA	False	NA	NA	False	NA	NA	NA	36186781	36185601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_36185600_36186800
67540	chr13	+	1705	1	Intergenic	novelGene_1534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCCCCAATCCCCACCAC	NA	False	NA	NA	False	NA	NA	NA	111614928	111616633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_111614900_111616600
67541	chr9	-	537	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	135	-57	135	57	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGTGACTGTAAC	NA	False	NA	NA	False	NA	NA	NA	22097382	22096845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22096800_22097400
67543	chr11	+	1720	1	ISM	ENSMUSG00000007653.13	ENSMUST00000143626.2	2709	5	108586	7	108546	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTACAGAAAGCATAACCTG	282	False	NA	NA	False	NA	NA	NA	42420722	42422442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_42420700_42422400
67545	chr16	+	1546	7	FSM	ENSMUSG00000022957.21	ENSMUST00000231852.2	1562	7	26	-10	-8	10	multi-exon	FALSE	canonical	0	0	junction_1	4.09945795874961	11	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTGTGTAGGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	91700942	91709234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91701327_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
67547	chr15	-	530	5	NNC	ENSMUSG00000014313.16	novel	503	4	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	4245.4612823579	132	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTGCTTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	35938344	35932125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_35932244_35935430_35935560_35937105_35937185_35937300_35937431_35938270
67548	chr16	-	503	2	Genic_Genomic	ENSMUSG00000116835.2	novel	615	1	NA	NA	-35	46	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGTCAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	33827862	33827166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_33827463_33827655
67549	chr4	+	215	1	Intergenic	novelGene_1801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTGTAGTGGGGCATT	NA	False	NA	NA	False	NA	NA	NA	11254603	11254818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_11254600_11254800
67550	chr9	-	1641	6	Fusion	ENSMUSG00000098161.2_ENSMUSG00000103968.2	novel	388	4	NA	NA	3	5341	multi-exon	FALSE	non_canonical	2	8	junction_3	17.9398996652713	2	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTTAAAAGCCAGGCAT	NA	False	NA	NA	False	NA	NA	NA	118235164	118226191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_118227447_118232126_118232223_118233371_118233418_118233466_118233558_118233797_118233891_118235104
67551	chr19	+	2109	10	FSM	ENSMUSG00000024663.21	ENSMUST00000113161.10	5146	10	79	2958	7	-36	multi-exon	FALSE	canonical	3	20	junction_4	9.36897954837013	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCGATCTCTATTTAATAAA	4046	False	NA	NA	False	NA	NA	NA	9995635	10012783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
67552	chr5	+	1926	11	ISM	ENSMUSG00000038011.16	ENSMUST00000141137.7	13862	78	49767	42519	-11701	4403	internal_fragment	TRUE	canonical	0	0	junction_1	3.07245829914744	5	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTGAGCTATGTCCTC	NA	False	NA	NA	False	NA	NA	NA	124851915	124868848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_124852310_124852408_124852593_124854222_124854358_124854880_124855034_124856147_124856337_124859331_124859479_124860891_124861084_124862211_124862331_124864380_124864540_124866825_124866962_124868730
67553	chr8	+	2049	11	NNC	ENSMUSG00000019278.6	novel	985	7	NA	NA	-29	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4	23	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAACTTATGAGGGACA	NA	False	NA	NA	False	NA	NA	NA	123920203	123928518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_123920250_123920771_123920926_123925452_123925586_123925783_123925917_123926032_123926184_123926360_123926431_123926679_123926857_123926945_123927031_123927105_123927182_123927376_123927513_123927630
67557	chr11	+	1740	11	FSM	ENSMUSG00000045007.10	ENSMUST00000043654.10	1754	11	14	0	14	0	multi-exon	TRUE	canonical	2	5	junction_5	90.3044295702044	36	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCTTTGTTTGTGACT	1665	False	NA	NA	False	NA	NA	NA	101046746	101052613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101046995_101047273_101047387_101047578_101047747_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101050970_101051072_101051223_101051619_101051773_101051852_101052015_101052230
67558	chr18	-	2193	4	ISM	ENSMUSG00000073542.4	ENSMUST00000236857.2	3354	11	13909	6	13909	-6	3prime_fragment	FALSE	canonical	3	70	junction_2	12.684198393627	65	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATTTAGTTTTGGAT	NA	False	NA	NA	False	NA	NA	NA	67758074	67750876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_67752443_67752605_67752824_67756206_67756541_67757999
67559	chr2	+	1961	6	ISM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	20236	20	3048	-4	3prime_fragment	FALSE	canonical	3	113	junction_5	11.7881296226331	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCACGCTCCTTTGCTTC	910	False	NA	NA	False	NA	NA	NA	131353919	131367083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
67560	chr15	+	1384	11	Antisense	novelGene_ENSMUSG00000022403.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCATGCTTAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	81249250	81276517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_81249782_81250556_81250693_81253598_81253650_81255667_81255775_81259004_81259110_81261895_81262014_81262122_81262189_81267172_81267243_81272531_81272611_81273855_81273920_81276460
67561	chr8	+	1974	3	Intergenic	novelGene_1706	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	24	junction_2	7.5	88	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATATTTAATATCTATATT	3452	False	NA	NA	False	NA	NA	NA	89779882	89797606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_89779957_89784011_89784080_89795774
67562	chr17	-	1125	3	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-12	44	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	31	39	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTTTTACTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	71905762	71895507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71895980_71897482_71897518_71905144
67563	chr5	-	1264	9	Intergenic	novelGene_707	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCCGCACGCTAGCGGCT	NA	False	NA	NA	False	NA	NA	NA	37282636	37185715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_37185850_37262169_37262303_37262953_37263093_37264599_37264661_37274783_37274913_37276120_37276235_37278292_37278366_37280620_37280687_37282221
67564	chr9	-	1443	2	FSM	ENSMUSG00000032271.14	ENSMUST00000128076.2	558	2	-49	-836	27	836	multi-exon	FALSE	canonical	3	43	junction_1	0	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAAATATTACATTTTAT	NA	False	NA	NA	False	NA	NA	NA	48516426	48513740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_48514862_48516104
67565	chr11	+	1367	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	202	25	48	-25	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTAAAGGTCTTTCTG	NA	False	NA	NA	False	NA	NA	NA	54793799	54801178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
67566	chr17	-	1396	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	101	7	101	-6	multi-exon	FALSE	canonical	3	423	junction_10	38.5186643070603	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTTCTTGTTTGCATTT	895	False	NA	NA	False	NA	NA	NA	23892715	23887598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
67569	chr13	-	964	6	Antisense	novelGene_ENSMUSG00000015536.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	32	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCGCATGCGCAGCCGGA	NA	False	NA	NA	False	NA	NA	NA	114965265	114954788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_114954857_114957334_114957479_114961098_114961223_114961738_114961802_114962693_114962816_114964822
67571	chr1	+	2031	8	NIC	ENSMUSG00000026170.7	novel	1892	9	NA	NA	-38	-11	intron_retention	TRUE	canonical	1	2	junction_4	2.0995626366713	15	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAATTCAAGTTTTTGGG	NA	False	NA	NA	False	NA	NA	NA	74752694	74777040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74753051_74771077_74771269_74774435_74774636_74774712_74775196_74775839_74776007_74776175_74776258_74776337_74776551_74776701
67572	chr11	-	1307	10	NNC	ENSMUSG00000018537.17	novel	2347	10	NA	NA	4	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	74.425868329118	1	55	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATAAATATATATATGT	NA	False	NA	NA	False	NA	NA	NA	97590463	97580677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97581185_97581786_97581868_97582509_97582602_97582679_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
67573	chr9	+	1829	8	ISM	ENSMUSG00000038664.17	ENSMUST00000135159.2	1705	9	-211	1695	-211	-1695	5prime_fragment	FALSE	canonical	2	10	junction_1	2.25876975726313	3	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCTGAAGACCAAGACCAA	7634	False	NA	NA	False	NA	NA	NA	66358196	66370341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_66358761_66360618_66360818_66363217_66363379_66364718_66364836_66365475_66365708_66367689_66367815_66368981_66369182_66370110
67577	chr17	-	1069	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	0	5	0	-3	multi-exon	FALSE	canonical	3	7	junction_7	17.2496672549984	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCAGTGTGGTACCAGA	4359	False	NA	NA	False	NA	NA	NA	26004541	26001801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
67578	chr1	-	1584	12	FSM	ENSMUSG00000040629.9	ENSMUST00000038782.4	1546	12	-38	0	-35	0	multi-exon	FALSE	canonical	3	15	junction_10	4.55453638177285	79	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCACTCTTGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	166066351	166028953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_166029305_166029843_166029920_166032358_166032492_166033421_166033485_166053158_166053301_166053405_166053461_166054134_166054260_166061733_166061776_166062969_166063126_166064441_166064542_166065831_166065925_166066103
67579	chr7	+	454	4	NNC	ENSMUSG00000006333.15	novel	813	5	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6904.63527075994	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTATTGGTGTGCCTCT	1661	False	NA	NA	False	NA	NA	NA	3707388	3709893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3707448_3707644_3707768_3708731_3708815_3709704
67580	chr2	-	403	4	NNC	ENSMUSG00000062997.7	novel	946	4	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16635.847164749	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCTTCATGTTTTACA	NA	False	NA	NA	False	NA	NA	NA	38895137	38891592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_38891778_38894118_38894158_38894743_38894881_38895095
67582	chr3	-	997	3	NNC	ENSMUSG00000027809.15	novel	3740	3	NA	NA	-19	-3086	intron_retention	FALSE	canonical	0	0	junction_2	55	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTCAATTGTTAGGTAT	3689	False	NA	NA	False	NA	NA	NA	79536065	79529959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_79530275_79530847_79530986_79535521
67583	chr14	-	971	1	Intergenic	novelGene_535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTTGTTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	29583979	29583008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_29583000_29584000
67584	chr8	-	796	5	FSM	ENSMUSG00000046718.9	ENSMUST00000051672.9	792	5	-4	0	-4	0	multi-exon	FALSE	canonical	3	305	junction_3	21.2176223927187	1508	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGCTTCTAAGTTGCT	NA	False	NA	NA	False	NA	NA	NA	71990104	71986898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71987125_71987315_71987437_71988429_71988470_71989002_71989079_71989771
67585	chr15	+	1355	1	ISM	ENSMUSG00000091050.2	ENSMUST00000163781.2	2147	2	634	271	634	-271	mono-exon	FALSE	NA	NA	NA	NA	NA	537	33	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAGAACTGACTCTAGCC	9451	False	NA	NA	False	NA	NA	NA	98465838	98467193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_98465800_98467200
67587	chr7	+	684	4	NNC	ENSMUSG00000061286.8	novel	1020	6	NA	NA	-6	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	610.0876075523	27	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGATTCCGGTGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	25358609	25367451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_25358809_25362561_25362645_25365692_25365768_25367124
67588	chr14	+	536	5	NNC	ENSMUSG00000060126.15	novel	1169	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2331.35790634986	2	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTAAGAACTCTTTGCTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084145_76085602
67589	chr10	+	2429	19	FSM	ENSMUSG00000019854.18	ENSMUST00000150029.8	2462	19	-2	35	-2	-21	multi-exon	FALSE	canonical	3	82	junction_9	47.5026964796685	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCAATAAAAGGGTCAGG	NA	False	NA	NA	False	NA	NA	NA	17931749	18000857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_17931864_17965195_17965320_17968592_17968790_17968917_17969072_17969526_17969652_17970157_17970321_17970592_17970657_17971929_17972085_17979901_17980024_17990146_17990235_17991463_17991566_17993412_17993483_17994674_17994794_17995912_17995978_17996780_17996967_17998182_17998279_17998772_17998922_17999346_17999453_18000627
67590	chr1	-	2711	1	FSM	ENSMUSG00000102278.2	ENSMUST00000193540.2	2756	1	54	-9	54	9	mono-exon	FALSE	NA	NA	NA	NA	NA	10	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAACATACCTTTAAAAAA	1965	False	NA	NA	False	NA	NA	NA	172218502	172215791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_172215800_172218500
67591	chr7	-	1270	8	FSM	ENSMUSG00000030905.6	ENSMUST00000033198.6	1383	8	104	9	104	-9	multi-exon	FALSE	canonical	1	2	junction_4	2.55550625999976	55	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGTGTGTCCTTTGAC	NA	False	NA	NA	False	NA	NA	NA	119801230	119785611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_119785922_119788948_119789034_119789674_119789797_119794547_119794732_119796872_119796975_119798470_119798534_119800299_119800451_119800977
67592	chr2	-	1152	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	26.9250812440743	963	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	NA	False	NA	NA	NA	164646802	164634687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
67593	chr8	+	475	2	Genic_Genomic	ENSMUSG00000066362.6	novel	538	1	NA	NA	5	-10	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCTCA	NA	False	NA	NA	False	NA	NA	NA	87774321	87774844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_87774633_87774680
67594	chr17	+	1463	8	Fusion	ENSMUSG00000055413.13_ENSMUSG00000079507.11_ENSMUSG00000035929.12	novel	2024	8	NA	NA	3	756	multi-exon	FALSE	non_canonical	0	0	junction_1	1.35526185435788	41	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGAAAACCTTTCAGGAT	5414	False	NA	NA	False	NA	NA	NA	35539525	35617532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_35539602_35561575_35561779_35578425_35578502_35599336_35599613_35601833_35602110_35616454_35616572_35616743_35616777_35617126
67595	chr11	-	988	4	ISM	ENSMUSG00000020805.15	ENSMUST00000137701.3	1746	11	-22	16445	-22	258	5prime_fragment	FALSE	canonical	3	49	junction_1	1.4142135623731	71	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCTTGCTAGACTTATT	NA	False	NA	NA	False	NA	NA	NA	72157461	72150658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_72151209_72152438_72152576_72152848_72152978_72157289
67597	chr12	-	1206	5	Antisense	novelGene_ENSMUSG00000041323.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTGGGAGTTACCCGGT	NA	False	NA	NA	False	NA	NA	NA	105735382	105713358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_105713572_105727723_105727856_105730211_105730280_105732811_105733010_105734787
67598	chr8	-	1977	3	ISM	ENSMUSG00000035569.18	ENSMUST00000172906.8	8481	13	74733	13204	-280	-6	internal_fragment	FALSE	canonical	3	242	junction_1	10.5	32	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACAGAAATGTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	123626799	123623764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_123625456_123626342_123626547_123626717
67599	chr3	+	1249	11	NIC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	2811	171	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	124.569819779913	1	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGTTTGCTATTTTGAT	NA	False	NA	NA	False	NA	NA	NA	95469799	95495153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95469936_95473931_95473996_95474994_95475032_95478238_95478266_95482845_95482914_95483587_95483740_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
67600	chr12	+	816	6	NNC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	50	-223	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	176.337630697478	1	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGCTTAACTTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	21366486	21373597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21366514_21367376_21367425_21367898_21368048_21369770_21369933_21371334_21371457_21373289
67601	chr14	+	960	6	NNC	ENSMUSG00000041765.7	novel	688	5	NA	NA	64	-797	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	167.24281748404	77	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTATTTTTTTACTGGGC	2074	False	NA	NA	False	NA	NA	NA	122183789	122257649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122183921_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
67603	chr13	+	991	5	FSM	ENSMUSG00000078941.10	ENSMUST00000022135.15	1298	5	360	-53	-4	53	multi-exon	FALSE	canonical	3	650	junction_4	426.823734110464	2746	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGGTCAGTATTGCTT	NA	False	NA	NA	False	NA	NA	NA	100787846	100802920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800705_100802334
67604	chr17	+	848	5	FSM	ENSMUSG00000007050.18	ENSMUST00000114011.11	840	5	-8	0	-8	0	multi-exon	FALSE	canonical	3	1192	junction_1	217.150869213089	937	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	93	False	NA	NA	False	NA	NA	NA	35200847	35204867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35201062_35201595_35201664_35204084_35204116_35204224_35204285_35204392
67605	chr11	-	1941	1	NIC	ENSMUSG00000017615.13	novel	3720	7	NA	NA	71	-11410	mono-exon	FALSE	NA	NA	NA	NA	NA	13	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGAGGAATACACTTTT	NA	False	NA	NA	False	NA	NA	NA	78427026	78425085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_78425100_78427000
67606	chr14	+	1218	15	FSM	ENSMUSG00000112858.3	ENSMUST00000218311.2	1201	15	-6	-11	-6	0	multi-exon	TRUE	canonical	3	13	junction_1	4.37525509460387	95	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTTGTATGAGGGT	NA	False	NA	NA	False	NA	NA	NA	55051591	55091563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55051743_55053942_55054044_55056993_55057047_55057594_55057670_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
67607	chr12	-	1423	12	Antisense	novelGene_ENSMUSG00000113223.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	73	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACATCTGGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	99885554	99857747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_99858004_99859875_99859921_99860977_99861021_99864521_99864611_99868600_99868650_99872308_99872376_99875930_99876106_99876541_99876623_99877854_99878039_99878532_99878580_99881658_99881816_99885324
67610	chr2	-	1165	7	NNC	ENSMUSG00000027613.16	novel	1500	6	NA	NA	-22	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	611.504542546951	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGTGTGCTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	155668605	155661755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246_155668410_155668500
67611	chr15	-	591	2	NNC	ENSMUSG00000022283.16	novel	632	3	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	297	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	380	False	NA	NA	False	NA	NA	NA	36609214	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36596315_36609034
67612	chr14	+	1748	9	FSM	ENSMUSG00000022131.4	ENSMUST00000022728.4	1875	9	122	5	122	-5	multi-exon	FALSE	canonical	3	145	junction_5	22.6463987203264	51	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAACGAATTAGCATTTGT	NA	False	NA	NA	False	NA	NA	NA	118374691	118400668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
67613	chr15	+	1526	12	NNC	ENSMUSG00000078954.10	novel	1464	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.989143138924	475	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	84604253	84656405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84604314_84617090_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
67614	chr5	-	896	4	NNC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	-28	intron_retention	FALSE	non_canonical	0	0	junction_1	366.056765482562	9	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATCAATAAAACTTATTT	NA	False	NA	NA	False	NA	NA	NA	130284373	130274599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_130274917_130279729_130279856_130282779_130282910_130284050
67615	chr14	+	3173	1	Antisense	novelGene_ENSMUSG00000021815.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAGAGATGGCTCACT	NA	False	NA	NA	False	NA	NA	NA	20544980	20548153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_20545000_20548200
67617	chr14	-	1797	4	ISM	ENSMUSG00000021785.9	ENSMUST00000153109.2	3296	5	89	11462	89	852	5prime_fragment	FALSE	canonical	3	70	junction_2	8.52447456836295	17	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGGTTTTTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	6220347	6197925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_6199289_6208962_6209200_6215006_6215122_6220265
67618	chr6	+	1037	2	Antisense	novelGene_ENSMUSG00000051695.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	100	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGGGCGGCTGGCGGGG	NA	False	NA	NA	False	NA	NA	NA	86501483	86502944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_86502458_86502881
67619	SIRV8003	+	2518	1	FSM	SIRV8003A	SIRV8003	8000	1	5459	23	5459	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	1	77	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTAGACGAGTCACTCAC	NA	False	NA	NA	False	NA	NA	NA	5459	7977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV8003_+_5500_8000
67620	chr11	-	1984	1	Antisense	novelGene_ENSMUSG00000020936.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCGAGAGCCGGACTCCG	3732	False	NA	NA	False	NA	NA	NA	102921376	102919392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_102919400_102921400
67621	chr10	-	2434	7	ISM	ENSMUSG00000020231.16	ENSMUST00000036033.14	6322	38	72609	2	-2080	-2	3prime_fragment	TRUE	canonical	3	28	junction_2	6.6332495807108	20	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTCTGCATTTTGAAAT	2474	False	NA	NA	False	NA	NA	NA	76108485	76098886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_76100708_76101331_76101456_76102150_76102326_76104325_76104401_76105937_76105996_76106229_76106292_76108366
67622	chr13	-	616	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	236	137	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAACGGTGTCCTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	34314327	34311208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311554_34313234_34313338_34314159
67623	chr9	+	1423	5	ISM	ENSMUSG00000059412.8	ENSMUST00000214017.2	699	6	1193	-14	-24	-3	3prime_fragment	FALSE	canonical	3	206	junction_4	7.3143694191639	72	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCCGTGAGTGCTTATC	NA	False	NA	NA	False	NA	NA	NA	45318445	45321572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
67624	chr16	+	1942	4	ISM	ENSMUSG00000050821.15	ENSMUST00000056518.13	2432	6	4030	61	2763	-57	3prime_fragment	FALSE	canonical	1	1	junction_1	0.471404520791032	13	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGTTTATTCTATTTATT	584	False	NA	NA	False	NA	NA	NA	20517687	20521737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20517766_20518017_20518201_20518378_20518496_20520173
67626	chr14	-	2617	1	NIC	ENSMUSG00000095743.2	novel	1403	5	NA	NA	459	-2228	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGGGCCAATGATCAAGG	3489	False	NA	NA	False	NA	NA	NA	43816144	43813527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_43813500_43816100
67627	chr11	+	1238	9	ISM	ENSMUSG00000055805.16	ENSMUST00000042286.12	3806	26	24313	3	-1381	3	3prime_fragment	FALSE	canonical	3	27	junction_1	5.29002599237471	29	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGTGCGTCGGCTCGGTG	NA	False	NA	NA	False	NA	NA	NA	103086245	103089724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_103086320_103086435_103086505_103087086_103087168_103087241_103087372_103087510_103087675_103087903_103088006_103088140_103088222_103088483_103088605_103089308
67628	chr8	-	877	6	NIC	ENSMUSG00000031897.10	novel	1311	8	NA	NA	-49	2	intron_retention	FALSE	canonical	1	4	junction_5	120.898966083255	515	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACTTAAACAGAAGGCT	NA	False	NA	NA	False	NA	NA	NA	106664346	106662373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106662538_106662627_106662780_106663327_106663614_106663872_106664014_106664125_106664224_106664310
67629	chr10	-	2032	4	Genic_Genomic	ENSMUSG00002076974.1	novel	105	1	NA	NA	-611	8501	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGGTAGAAAATTTTATAA	NA	False	NA	NA	False	NA	NA	NA	41284884	41275667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_41275886_41278225_41278294_41282823_41283028_41283342
67630	chr17	-	385	1	FSM	ENSMUSG00000089255.3	ENSMUST00000158630.3	128	1	-99	-158	-99	158	mono-exon	FALSE	NA	NA	NA	NA	NA	1157	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTTTTTTGGTTTTGGTT	4364	False	NA	NA	False	NA	NA	NA	24938876	24938491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24938500_24938900
67633	chr14	-	1277	2	Genic_Genomic	ENSMUSG00000115109.2	novel	1100	1	NA	NA	-438	-14	multi-exon	FALSE	canonical	0	0	junction_1	0	24	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTACCTTGAATATCGT	NA	False	NA	NA	False	NA	NA	NA	34492450	34490926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_34491973_34492219
67634	chr1	+	2182	19	Intergenic	novelGene_498	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	69	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATTTCTGTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	185022793	185059934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_185022828_185023514_185023623_185026940_185027075_185027753_185027877_185028606_185028710_185029668_185029779_185034904_185035004_185035500_185035601_185048092_185048251_185050002_185050144_185050749_185050855_185053038_185053206_185054598_185054706_185055014_185055111_185055179_185055299_185055381_185055432_185055862_185056013_185057699_185057860_185059816
67635	chr7	+	728	6	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_3	6959.31696073688	10	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12657009_12659318_12659524_12659663_12659793_12660322_12660422_12660498
67636	chr4	+	1791	9	Antisense	novelGene_ENSMUSG00000014592.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	29	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTCCCAGCGCCCGAGGC	NA	False	NA	NA	False	NA	NA	NA	151158187	151170644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_151158519_151159547_151159745_151162322_151162392_151163236_151163490_151164147_151164329_151168127_151168321_151169021_151169339_151170019_151170096_151170470
67637	chr5	+	1489	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	111	158	5	-134	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	2	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATCTGCATGTTTAA	8780	False	NA	NA	False	NA	NA	NA	135197247	135210551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
67638	chr18	-	1759	2	Antisense	novelGene_ENSMUSG00000038555.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGATGTATTCGTCG	NA	False	NA	NA	False	NA	NA	NA	34980493	34978652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_34979368_34979449
67639	chr13	+	928	1	ISM	ENSMUSG00000021373.17	ENSMUST00000021802.16	3713	13	146865	641	8655	5	mono-exon	FALSE	NA	NA	NA	NA	NA	14	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAATTCTCATTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	46802188	46803116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_46802200_46803100
67641	chr8	-	2102	4	Intergenic	novelGene_1720	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.942809041582063	7	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGGACTTTAGAATT	NA	False	NA	NA	False	NA	NA	NA	107178087	107161402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_107162072_107162142_107163368_107166936_107167008_107177950
67642	chr7	+	1737	3	Antisense	novelGene_ENSMUSG00000043456.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	6	22	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCAACTTCTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	37177871	37181235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_37178037_37179528_37179678_37179812
67643	chr8	-	439	1	Genic_Genomic	ENSMUSG00000019362.9	novel	NA	NA	NA	NA	3045	2	mono-exon	FALSE	NA	NA	NA	NA	NA	19	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGTGCTGTTTGGTGC	7762	False	NA	NA	False	NA	NA	NA	84973303	84972864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_84972900_84973300
67644	chr17	-	667	1	Intergenic	novelGene_152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAGGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	35354084	35353417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35353400_35354100
67646	chr11	+	1134	3	FSM	ENSMUSG00000044122.16	ENSMUST00000060539.13	960	3	-136	-38	-136	1	multi-exon	FALSE	canonical	3	12	junction_2	1	34	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTACCGCTATTCTCTGCC	NA	False	NA	NA	False	NA	NA	NA	78085393	78096331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78085781_78092637_78092719_78095665
67648	chr17	+	1201	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-34	-1	combination_of_known_splicesites	FALSE	canonical	3	24	junction_3	47.0790558528949	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTGTGGGTGTCCCCTC	NA	False	NA	NA	False	NA	NA	NA	95057493	95082556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
67649	chr19	+	1238	9	FSM	ENSMUSG00000025193.15	ENSMUST00000112047.10	1233	9	-7	2	-7	-2	multi-exon	FALSE	canonical	3	18	junction_1	5.45435605731786	145	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATAGTCTCAGGTTCTT	9267	False	NA	NA	False	NA	NA	NA	43741529	43757075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
67650	chr19	+	1041	1	NIC	ENSMUSG00000024925.12	novel	1126	4	NA	NA	2	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	42	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAATGCCTGAGTCTGT	5061	False	NA	NA	False	NA	NA	NA	5651916	5652957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5651900_5653000
67653	chr6	-	2132	5	FSM	ENSMUSG00000030170.15	ENSMUST00000117171.8	2174	5	40	2	40	0	multi-exon	FALSE	canonical	3	7	junction_4	2.73861278752583	36	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCTCTCCCTCTCCTTA	NA	False	NA	NA	False	NA	NA	NA	119426307	119409493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119426177
67654	chr5	+	1096	6	ISM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	39	35772	39	1	5prime_fragment	FALSE	canonical	3	1057	junction_5	106.091281451399	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCACCAGCAGTGGATATA	805	False	NA	NA	False	NA	NA	NA	75735653	75781610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506
67655	SIRV7	+	683	5	Antisense	novelGene_SIRV7A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGTATACTCTAATGAAGA	NA	False	NA	NA	False	NA	NA	NA	56032	147720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV7_+_56098_70883_70987_78840_78963_114679_114961_147608
67656	chr12	+	1687	11	NNC	ENSMUSG00000020646.18	novel	6792	12	NA	NA	0	-486	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	45.1230539746591	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCTCAGCATCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	24881629	25009387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24881774_24928189_24928340_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
67657	chr1	-	2329	1	ISM	ENSMUSG00000016262.15	ENSMUST00000155579.8	3350	4	8940	0	4931	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGTTTTTTAAAATTTC	NA	False	NA	NA	False	NA	NA	NA	192529124	192526795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_192526800_192529100
67658	chr1	-	615	5	NNC	ENSMUSG00000043716.14	novel	1597	5	NA	NA	0	55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2838.5251011749	2	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGTTAGTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	16174626	16171948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_16172161_16172713_16172824_16172915_16172996_16173733_16173909_16174588
67659	chr4	+	368	1	NIC	ENSMUSG00000025791.19	novel	2371	11	NA	NA	139	-57374	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCAGTACCCCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	99786749	99787117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_99786700_99787100
67660	chr4	+	2141	1	Intergenic	novelGene_1908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGTCTCTCGAATTTGTT	NA	False	NA	NA	False	NA	NA	NA	99787379	99789520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_99787400_99789500
67661	chr7	+	2264	3	FSM	ENSMUSG00000060260.14	ENSMUST00000093993.5	3057	3	5	788	0	26	multi-exon	FALSE	canonical	3	49	junction_2	5.5	35	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCTCTGCTCCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	138828402	138847103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_138828560_138834685_138836077_138846387
67662	chr6	-	645	4	NNC	ENSMUSG00000052962.4	novel	3721	4	NA	NA	-5	222	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	680.971365036739	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAGTTAAATTTATTGT	NA	False	NA	NA	False	NA	NA	NA	71800752	71792924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71793272_71794588_71794737_71795745_71795843_71800699
67663	chr11	+	1268	9	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	4925	10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	230.350141089603	2	50	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATGATCTGGCC	NA	False	NA	NA	False	NA	NA	NA	104178131	104219077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_104178212_104185684_104185751_104193186_104193237_104196037_104196236_104197451_104197585_104201094_104201361_104212176_104212259_104213253_104213367_104218797
67664	chr5	+	1388	1	NIC	ENSMUSG00000106918.4	novel	2045	4	NA	NA	19	-24231	mono-exon	FALSE	NA	NA	NA	NA	NA	4	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACACCAAGATGCTATTTAA	7691	False	NA	NA	False	NA	NA	NA	31754297	31755685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31754300_31755700
67666	chr4	+	2165	4	NNC	ENSMUSG00000070618.11	novel	2095	4	NA	NA	-4864	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1.4142135623731	2	46	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTTTGTTATTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	143289180	143300368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_143289289_143297554_143297869_143298345_143298937_143299216
67667	chr1	-	668	3	ISM	ENSMUSG00000026425.16	ENSMUST00000189893.7	3171	5	2286	49591	2281	183	internal_fragment	FALSE	canonical	3	141	junction_1	2	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTTTTAACCTTCCTAAG	NA	False	NA	NA	False	NA	NA	NA	131452804	131339354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_131339701_131364412_131364606_131452675
67668	chr7	-	1560	7	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	-810	232	intron_retention	FALSE	non_canonical	0	0	junction_1	17.3565549577098	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCAAACTATTCTGAGAC	NA	False	NA	NA	False	NA	NA	NA	79970655	79966111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79966291_79966439_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79969839_79969962_79970049
67669	chr19	-	926	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	94	0	-3	0	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	422	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAATGTCCTGCTGCTTG	NA	False	NA	NA	False	NA	NA	NA	29339276	29325998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
67670	chr7	-	819	1	Intergenic	novelGene_2907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCACTGCCAGGCAAAGAT	NA	False	NA	NA	False	NA	NA	NA	28088250	28087431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_28087400_28088200
67671	chr8	+	644	5	NIC	ENSMUSG00000014856.13	novel	801	6	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	176.59328271483	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	49	False	NA	NA	False	NA	NA	NA	106053067	106055689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055403
67672	chr4	+	1791	6	NNC	ENSMUSG00000028347.15	novel	489	5	NA	NA	-13773	-47	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	209.63053212736	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTGATTTGGAAAAGC	4230	False	NA	NA	False	NA	NA	NA	48623160	48663084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_48623370_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
67673	chr2	+	896	9	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	1	-429	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	301.164406927512	1	33	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCACAGATGCATGTGGT	1937	False	NA	NA	False	NA	NA	NA	5850064	5873118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5850197_5859626_5859694_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871164_5871219_5872899
67675	chr5	-	1923	3	Antisense	novelGene_ENSMUSG00000090015.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	39	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCTCTCCCTTGAGATCC	7439	False	NA	NA	False	NA	NA	NA	110078908	110017418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_110017678_110017720_110019294_110078817
67676	chr16	-	770	2	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	31	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAATCTCAGCACAATTCA	NA	False	NA	NA	False	NA	NA	NA	48434251	48420480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48421063_48434063
67678	chr9	+	498	4	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1452	-161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9915.05128579777	1	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGGTGACAAACCCTTG	NA	False	NA	NA	False	NA	NA	NA	64082126	64085787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082331_64082865_64083005_64083373_64083460_64085718
67679	chr9	-	1002	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	27	14	27	0	multi-exon	FALSE	canonical	3	43	junction_2	2.5	236	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGTGTCTCTGAATGCA	NA	False	NA	NA	False	NA	NA	NA	48516426	48503190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_48503663_48514653_48514862_48516104
67680	chr11	-	1879	1	Intergenic	novelGene_2221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATGTAACAGAAAACAAAGG	NA	False	NA	NA	False	NA	NA	NA	12233909	12232030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_12232000_12233900
67681	chr7	-	727	2	FSM	ENSMUSG00000063838.7	ENSMUST00000140410.2	362	2	148	-513	148	-3	multi-exon	FALSE	canonical	3	148	junction_1	0	165	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACTGTCTATTCACTTTA	NA	False	NA	NA	False	NA	NA	NA	4167293	4154261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4154787_4167091
67686	chr9	-	354	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	218	372	-4	-73	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCCCTGTCATAACATCT	NA	False	NA	NA	False	NA	NA	NA	108911437	108907326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
67687	chr3	-	2199	5	FSM	ENSMUSG00000040289.9	ENSMUST00000042412.5	2423	5	222	2	-50	-2	multi-exon	FALSE	canonical	3	9	junction_1	1.11803398874989	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTACTGTGTCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	8732094	8728420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_8730125_8731004_8731087_8731331_8731416_8731561_8731638_8731841
67688	chr18	+	833	5	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-10	193	combination_of_known_splicesites	FALSE	canonical	3	288	junction_3	1074.60606154069	3693	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	NA	False	NA	NA	NA	80249999	80265746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_80250117_80250368_80250559_80253276_80253346_80261918_80262023_80265393
67689	chr13	-	1468	1	Intergenic	novelGene_1521	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAACTACAACCCAGCCAG	NA	False	NA	NA	False	NA	NA	NA	99472576	99471108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_99471100_99472600
67690	chr14	-	955	4	FSM	ENSMUSG00000021917.17	ENSMUST00000226782.2	949	4	-6	0	-6	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	5896	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	30723572	30721782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
67691	chr4	+	314	3	FSM	ENSMUSG00000085525.8	ENSMUST00000144166.8	326	3	12	0	12	0	multi-exon	FALSE	canonical	3	253	junction_2	93	154	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	NA	False	NA	NA	NA	146206912	146215004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_146207052_146209452_146209546_146214922
67692	chr7	+	1072	3	ISM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	-17	11216	7	0	5prime_fragment	FALSE	canonical	3	128	junction_1	51	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTGTCTCGCTCTTAC	9901	False	NA	NA	False	NA	NA	NA	49408883	49412507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_49409060_49409345_49409542_49411807
67693	chr4	+	623	4	NNC	ENSMUSG00000065990.13	novel	773	4	NA	NA	313	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1143.00199280472	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACTCAATTATTCTAGGC	NA	False	NA	NA	False	NA	NA	NA	155916438	155917509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155916528_155916808_155917033_155917106_155917255_155917347
67694	chr6	+	1178	4	Intergenic	novelGene_4263	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCGTCCCTGCCCTGCAA	NA	False	NA	NA	False	NA	NA	NA	134587303	134609381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_134587821_134594279_134594420_134598694_134599013_134609178
67696	chr19	-	608	5	ISM	ENSMUSG00000024914.17	ENSMUST00000136579.3	734	6	239	-28	-55	-3	3prime_fragment	TRUE	canonical	3	999	junction_1	90.488949601595	333	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGATTTTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	5474303	5472842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209
67697	chr17	+	569	1	ISM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	6522	10	6401	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACAGTCTCTGGTGTAA	NA	False	NA	NA	False	NA	NA	NA	27782069	27782638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_27782100_27782600
67698	chr6	-	1375	1	ISM	ENSMUSG00000038227.16	ENSMUST00000048680.8	3226	2	2890	6	1709	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	16	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTTACGTTGTGCGGC	7239	False	NA	NA	False	NA	NA	NA	52201460	52200085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_52200100_52201500
67699	chr16	+	302	4	NNC	ENSMUSG00000022982.11	novel	641	5	NA	NA	117	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.742207411231	5	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAGTTGTAACTGTGTG	NA	False	NA	NA	False	NA	NA	NA	90017758	90023208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_90017818_90019667_90019765_90021243_90021314_90023132
67700	chr9	-	207	1	ISM	ENSMUSG00000097177.9	ENSMUST00000180712.8	2702	5	14699	2150	14647	-438	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATGGAATTCTTAATGAA	5570	False	NA	NA	False	NA	NA	NA	88726207	88726000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_88726000_88726200
67701	chr10	+	1813	1	Antisense	novelGene_ENSMUSG00000020027.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCACACGGGCTAGGTAAG	3347	False	NA	NA	False	NA	NA	NA	95221369	95223182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_95221400_95223200
67703	chr11	-	932	1	ISM	ENSMUSG00000018474.19	ENSMUST00000135909.8	1882	3	1815	0	1815	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGCTGTCATTTTTGCC	2006	False	NA	NA	False	NA	NA	NA	69235030	69234098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69234100_69235000
67704	chr13	-	1431	5	NIC	ENSMUSG00000021494.10	novel	2205	17	NA	NA	3718	-2	intron_retention	FALSE	canonical	3	708	junction_4	33.1813200460741	51	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGTTCTTCCTCTCTCA	NA	False	NA	NA	False	NA	NA	NA	55680519	55678230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679923_55680160
67708	chr2	-	1419	1	ISM	ENSMUSG00000090213.2	ENSMUST00000006587.7	2329	6	17456	74	1077	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACTGACTGTGGTGGGA	6838	False	NA	NA	False	NA	NA	NA	167486020	167484601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_167484600_167486000
67709	chr9	-	813	1	NIC	ENSMUSG00000032562.14	novel	1777	9	NA	NA	1094	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	319	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAACACCAAAAACTTC	NA	False	NA	NA	False	NA	NA	NA	107492152	107491339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107491300_107492200
67710	chr9	+	671	6	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-160	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7569.74183443531	1	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGGTGACAAACCCTTGT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083454_64085675
67713	chr5	-	888	1	FSM	ENSMUSG00000066621.13	ENSMUST00000196360.2	3136	1	11	2237	11	-2237	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGTAGCTGTACAGATG	NA	False	NA	NA	False	NA	NA	NA	144160330	144159442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_144159400_144160300
67714	chr11	+	1918	9	FSM	ENSMUSG00000112920.2	ENSMUST00000092926.11	1274	9	-69	-575	-69	575	multi-exon	FALSE	canonical	2	4	junction_2	2.3418742493994	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTAAAGGTGTAGAGAAAT	7102	False	NA	NA	False	NA	NA	NA	73220497	73237445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_73220602_73221913_73222021_73224123_73224253_73226835_73226897_73227020_73227117_73231076_73231411_73234562_73234687_73235471_73235570_73236580
67715	chr7	-	1455	9	ISM	ENSMUSG00000030382.16	ENSMUST00000032539.14	2288	10	1749	21	147	-15	3prime_fragment	TRUE	canonical	1	1	junction_2	0.707106781186548	9	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTGAATGTGTATACAAA	NA	False	NA	NA	False	NA	NA	NA	12730328	12722293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_12722580_12722659_12722791_12722936_12723035_12723280_12723480_12724893_12724985_12725071_12725267_12727241_12727367_12728806_12728966_12730157
67716	chr1	-	1838	12	NIC	ENSMUSG00000038174.15	novel	8685	12	NA	NA	-6	-619	combination_of_known_junctions	FALSE	canonical	2	2	junction_10	9.78360916351746	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGATCCCCAAGTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	58625442	58568860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_58569419_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58604926_58605114_58625370
67717	chr13	-	1453	7	NIC	ENSMUSG00000021592.19	novel	3657	8	NA	NA	-15	-2032	combination_of_known_junctions	TRUE	canonical	3	4	junction_6	10.5145401970583	1	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGCAAAGCGTAGGGCA	9818	False	NA	NA	False	NA	NA	NA	76246737	76210572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_76210722_76213398_76213624_76214753_76214979_76220218_76220391_76222893_76223171_76239776_76239937_76246492
67719	chr19	-	920	7	NNC	ENSMUSG00000024824.8	novel	2101	10	NA	NA	-6	18	intron_retention	FALSE	canonical	0	0	junction_2	161.418107892379	1	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCACCAGCCAGTGCCT	5992	False	NA	NA	False	NA	NA	NA	4251641	4247148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4247250_4247337_4247582_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
67720	chr7	-	2044	13	FSM	ENSMUSG00000025500.13	ENSMUST00000026573.7	2095	13	44	7	44	-7	multi-exon	TRUE	canonical	2	7	junction_8	3.08220700148449	18	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCATACCTGAGAGTTG	NA	False	NA	NA	False	NA	NA	NA	140793946	140789911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140790118_140790193_140790444_140790603_140790801_140790885_140791006_140791084_140791275_140791390_140791482_140791696_140791969_140792308_140792398_140792498_140792571_140792838_140792995_140793114_140793203_140793546_140793700_140793786
67722	chr6	+	1442	6	NNC	ENSMUSG00000049037.9	novel	1558	6	NA	NA	102	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9.41488183675186	40	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGGTGATCTGATGTG	NA	False	NA	NA	False	NA	NA	NA	122898908	122911562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122899039_122901675_122901790_122904922_122905025_122907635_122907788_122909105_122909224_122910736
67725	chr7	+	772	7	FSM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	5	4	0	-1	multi-exon	FALSE	canonical	3	54	junction_6	203.636454387606	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCAAGGTCTGTGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	30262754	30264783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
67726	chr6	-	1470	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115007.9	3326	4	-5	1861	-5	-6	multi-exon	FALSE	canonical	3	11	junction_1	4.92160768674447	67	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGTGTGTGTTTGTGACGA	7592	False	NA	NA	False	NA	NA	NA	34855000	34850635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_34851631_34852471_34852548_34853473_34853707_34854834
67727	chr11	-	2663	1	Antisense	novelGene_ENSMUSG00000005417.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAAGTAGCCGCTCTCTA	NA	False	NA	NA	False	NA	NA	NA	59630631	59627968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_59628000_59630600
67730	chr16	-	758	6	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAACAAGTTCTACATTT	NA	False	NA	NA	False	NA	NA	NA	48451212	48432649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48432774_48438861_48439005_48442915_48443011_48444650_48444704_48447272_48447468_48451064
67731	chr6	+	1454	1	Intergenic	novelGene_4271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAACTCTTGTTTATGAA	NA	False	NA	NA	False	NA	NA	NA	145005670	145007124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_145005700_145007100
67733	chr4	+	1016	1	Antisense	novelGene_ENSMUSG00000028693.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCCACGTCCAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	116484342	116485358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_116484300_116485400
67734	chr15	-	1584	9	NIC	ENSMUSG00000022617.16	novel	1416	10	NA	NA	7	3	intron_retention	FALSE	canonical	3	259	junction_8	51.9488931547151	347	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATACAGACTTAAGTGAC	1656	False	NA	NA	False	NA	NA	NA	89313626	89310566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89313031_89313251_89313361_89313579
67735	chr6	-	1506	13	NNC	ENSMUSG00000030304.12	novel	4174	14	NA	NA	3	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	403.978985633329	1	83	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTTAAAGAAAAGGGCATT	NA	False	NA	NA	False	NA	NA	NA	148113516	148082857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091079_148092416_148092522_148096697_148096789_148097495_148097598_148100853_148100895_148103993_148104041_148106273_148106383_148108030_148108174_148113467
67736	chr6	+	1364	1	Intergenic	novelGene_4132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGACTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30132491	30133855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_30132500_30133900
67738	chr8	+	789	5	Antisense	novelGene_ENSMUSG00000031816.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCCAGCCAAGCAAGGCG	914	False	NA	NA	False	NA	NA	NA	121830593	121834859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_121830920_121831130_121831242_121832308_121832426_121833607_121833711_121834727
67739	chr9	-	1300	4	NNC	ENSMUSG00000049073.8	novel	1879	2	NA	NA	-109695	-78	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	3.09120616516523	37	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTATGTATTGCTAAT	NA	False	NA	NA	False	NA	NA	NA	40151175	40038297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_40039350_40063206_40063277_40108832_40108959_40151123
67740	chr11	-	642	1	FSM	ENSMUSG00000085232.4	ENSMUST00000145746.2	255	1	-24	-363	-24	363	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	NA	False	NA	NA	NA	5445470	5444828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5444800_5445500
67742	chr10	+	2756	1	Intergenic	novelGene_3459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATACTCTCCACTGGTT	NA	False	NA	NA	False	NA	NA	NA	64870544	64873300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_64870500_64873300
67743	chr11	-	1228	2	ISM	ENSMUSG00000075389.4	ENSMUST00000145437.2	646	3	-115	270	-115	-270	5prime_fragment	FALSE	canonical	1	2	junction_1	0	8	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATTTTCCATTTTGGAT	6028	False	NA	NA	False	NA	NA	NA	120080793	120078802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120079503_120080265
67744	chr3	+	2231	7	FSM	ENSMUSG00000042784.10	ENSMUST00000041142.4	2242	7	3	8	3	-8	multi-exon	FALSE	canonical	2	4	junction_5	1.60727512683216	10	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTTATGCCAGCTGTGG	208	False	NA	NA	False	NA	NA	NA	89136366	89140680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89136485_89137217_89138522_89138619_89138673_89138807_89138942_89139069_89139192_89139272_89139423_89140330
67746	chr12	+	1016	11	NNC	ENSMUSG00000061458.10	novel	3021	21	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	80.6198486726439	45	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTACTGGCTATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	17398461	17480090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418331_17479865
67747	chr1	+	1688	10	NNC	ENSMUSG00000026641.14	novel	1115	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	72.512748985486	1	105	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGTCTGTCTTCCTCCT	6795	False	NA	NA	False	NA	NA	NA	171238938	171246325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245213_171245433_171245599
67750	chr7	-	1184	12	NIC	ENSMUSG00000038502.18	novel	1883	12	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	386	junction_1	118.728873718845	76	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTCCCTCCCTGCTT	7793	False	NA	NA	False	NA	NA	NA	44516859	44512491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44512619_44512802_44512869_44512958_44513157_44513806_44513912_44514035_44514094_44514185_44514260_44514336_44514427_44514895_44515052_44516233_44516342_44516483_44516542_44516616_44516700_44516798
67752	chr18	-	788	1	FSM	ENSMUSG00000117662.2	ENSMUST00000236054.2	792	1	-20	24	-1	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	15	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAAAAACCCTGGAATA	NA	False	NA	NA	False	NA	NA	NA	42408263	42407475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_42407500_42408300
67753	chr14	-	2023	9	NNC	ENSMUSG00000114865.3	novel	2342	14	NA	NA	2560	1534	intron_retention	TRUE	non_canonical	0	0	junction_1	0.866025403784439	8	86	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGGATGGAAAACCCTAC	NA	False	NA	NA	False	NA	NA	NA	54933697	54928520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54928713_54929979_54930426_54931151_54931699_54932154_54932419_54932506_54932604_54932684_54932755_54933073_54933249_54933334_54933481_54933611
67755	chr3	+	1157	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	-15	-12	3	12	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	281	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGACCTGTTGTGAAGCAG	385	False	NA	NA	False	NA	NA	NA	95532306	95539425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
67756	chr7	-	2937	3	NNC	ENSMUSG00000097343.3	novel	2310	3	NA	NA	9	-289	intron_retention	FALSE	canonical	0	0	junction_1	0	15	34	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTTTGAGGTTTCCTCA	NA	False	NA	NA	False	NA	NA	NA	120276784	120273246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_120275359_120275672_120276363_120276649
67757	chr17	+	1535	1	Genic_Genomic	ENSMUSG00000093622.2	novel	NA	NA	NA	NA	-27	127	mono-exon	FALSE	NA	NA	NA	NA	NA	12	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCTAGTTTAGTCTG	253	False	NA	NA	False	NA	NA	NA	71141631	71143166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_71141600_71143200
67759	chr1	+	2393	1	Intergenic	novelGene_455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAACAATTAATAAATAACT	NA	False	NA	NA	False	NA	NA	NA	136558417	136560810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_136558400_136560800
67761	chr3	+	1125	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	233.890765102002	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAAGTGCATGTTACTGC	NA	False	NA	NA	False	NA	NA	NA	145282026	145309867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_145282115_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
67762	chr17	-	1445	4	NNC	ENSMUSG00000024190.8	novel	1990	4	NA	NA	-251	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	237.31132856791	121	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCTCTCCGTGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	26726948	26724567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26725625_26725958_26726179_26726543_26726694_26726930
67763	chr8	+	1553	3	Antisense	novelGene_ENSMUSG00000006587.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCCGCGCGGCCGGCAGG	8140	False	NA	NA	False	NA	NA	NA	123180979	123187430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_123181776_123182863_123183468_123187277
67764	chr4	-	448	3	FSM	ENSMUSG00000071014.11	ENSMUST00000108108.3	480	3	35	-3	35	3	multi-exon	FALSE	canonical	3	10	junction_2	1267.5	31	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGTCCGTGTTACTGTC	-14	True	NA	NA	False	NA	NA	NA	40279374	40270661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40270848_40272809_40272855_40279157
67765	chr5	+	732	5	FSM	ENSMUSG00000067365.12	ENSMUST00000119047.8	726	5	-9	3	4	0	multi-exon	FALSE	canonical	3	18	junction_4	95.0167748347627	163	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCCCTTTTTATACTAT	NA	False	NA	NA	False	NA	NA	NA	38417718	38425248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38425041
67766	chr8	-	1640	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	14	4	6	-4	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAAATTTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	108151667	108139124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
67767	chr17	+	633	3	NNC	ENSMUSG00000023939.8	novel	510	2	NA	NA	-111	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	542	33	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	NA	False	NA	NA	NA	46006230	46009421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46006325_46006407_46006499_46008973
67769	chr4	+	632	6	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	-24	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7822.77224518265	2	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAGCCGCAGAAGTCCA	NA	False	NA	NA	False	NA	NA	NA	150321672	150333310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150332517_150332577_150332928_150333056_150333179
67770	chr7	-	1362	7	NNC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	89.7341753303736	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTGGCATCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	140461741	140443587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457788_140457869_140458059_140461675
67771	chr10	-	1271	6	FSM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	144	24	9	-24	multi-exon	FALSE	canonical	3	37	junction_1	33.5654584357193	44	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATAAAATACAAACTTCC	NA	False	NA	NA	False	NA	NA	NA	13744557	13528218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_13528756_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
67772	chr7	-	1154	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	138	855	2	-20	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	2	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGGGGTACATCGTGAC	NA	False	NA	NA	False	NA	NA	NA	44635778	44626267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
67773	chr12	+	2086	1	FSM	ENSMUSG00000119229.1	ENSMUST00000175468.4	89	1	-997	-1000	-997	1000	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGAGTCAAGCCCTCCT	2469	False	NA	NA	False	NA	NA	NA	109553379	109555465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109553400_109555500
67774	chr9	+	1075	1	NIC	ENSMUSG00000097967.2	novel	620	2	NA	NA	154	-2249	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCAGGAGAAGGCAAGGT	NA	False	NA	NA	False	NA	NA	NA	115029619	115030694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_115029600_115030700
67777	chr13	+	1392	3	ISM	ENSMUSG00000054021.7	ENSMUST00000220458.2	435	4	-13	3785	-13	-3785	5prime_fragment	FALSE	canonical	3	180	junction_1	9	5	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGAATGAATTTATTATT	NA	False	NA	NA	False	NA	NA	NA	43519090	43526423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_43519217_43524194_43524345_43525307
67778	chr11	+	1337	1	Intergenic	novelGene_2405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCCCTTCCCAGTTCAT	NA	False	NA	NA	False	NA	NA	NA	75727194	75728531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_75727200_75728500
67780	chr3	-	1779	10	NNC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	160.621017028006	1	96	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30702025	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_30679052_30685426_30685587_30685937_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
67782	chr9	+	378	3	Antisense	novelGene_ENSMUSG00000060461.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	271	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTCCAGGTTCAGGAAG	NA	False	NA	NA	False	NA	NA	NA	78274544	78275441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78274581_78275018_78275185_78275265
67783	chr6	-	2343	1	Antisense	novelGene_ENSMUSG00000040112.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGTTTGTGAGACAGAG	NA	False	NA	NA	False	NA	NA	NA	146975152	146972809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_146972800_146975200
67784	chr15	-	2052	1	Genic_Genomic	ENSMUSG00000037627.17	novel	NA	NA	NA	NA	875	762	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCCCAAACCCAACGTCAT	848	False	NA	NA	False	NA	NA	NA	36139656	36137604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_36137600_36139700
67785	chr11	+	1011	5	NIC	ENSMUSG00000019437.18	novel	457	4	NA	NA	-15	5	intron_retention	FALSE	canonical	3	12	junction_1	80.151419201409	62	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAAGTCCTGTTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	78068940	78071311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78069063_78069863_78070048_78070195_78070279_78070365_78070449_78070772
67786	chr2	-	1720	3	ISM	ENSMUSG00000004113.19	ENSMUST00000100348.10	7182	47	154899	-542	-614	542	3prime_fragment	FALSE	canonical	2	6	junction_1	0.5	34	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCATTGTTTCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	24498160	24495844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_24497113_24497453_24497699_24497953
67787	chr5	-	3529	1	Intergenic	novelGene_685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCTACACACTTTAGGG	NA	False	NA	NA	False	NA	NA	NA	32220693	32217164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_32217200_32220700
67788	chr13	-	1268	1	Genic_Genomic	ENSMUSG00000041685.17	novel	NA	NA	NA	NA	-3346	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCTTTCTCTTTCTTT	894	False	NA	NA	False	NA	NA	NA	98890155	98888887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_98888900_98890200
67789	chr7	-	1774	2	Antisense	novelGene_ENSMUSG00000050917.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGAGGCGGGGGTTGGG	NA	False	NA	NA	False	NA	NA	NA	144418171	144415968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_144416072_144416500
67790	chr2	+	869	4	FSM	ENSMUSG00000026810.13	ENSMUST00000028151.7	869	4	-11	11	-11	5	multi-exon	FALSE	canonical	3	274	junction_1	58.5965490072202	1472	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTTTGTCTCTCTGCCA	4762	False	NA	NA	False	NA	NA	NA	32460858	32463580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32460925_32461217_32461308_32462308_32462412_32462970
67791	chr7	+	1329	1	ISM	ENSMUSG00000045039.10	ENSMUST00000128119.2	10040	41	47400	25	18583	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	42	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAATAAAGTGTGGAGAA	NA	False	NA	NA	False	NA	NA	NA	25063988	25065317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_25064000_25065300
67792	chr9	-	993	1	Intergenic	novelGene_1183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGTAGGCTACAAAAGAGG	2300	False	NA	NA	False	NA	NA	NA	122803167	122802174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_122802200_122803200
67794	chr4	-	1008	1	Antisense	novelGene_ENSMUSG00000041954.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGAACAGGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	156110701	156109693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_156109700_156110700
67796	chr9	-	1623	3	ISM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	251	3434	-7	-2532	5prime_fragment	FALSE	canonical	3	60	junction_2	36	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGGATGTAGTTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	21150116	21144460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21145370_21148366_21149053_21150088
67799	chr2	-	591	1	ISM	ENSMUSG00000027297.16	ENSMUST00000140224.8	2240	14	6602	13	6596	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTAATTCTTCAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	119582404	119581813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_119581800_119582400
67800	chr14	-	472	4	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGCGGCGCGCGGGGGGA	NA	False	NA	NA	False	NA	NA	NA	76085743	76082810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082897_76083056_76083129_76083640_76083754_76085542
67801	chr19	-	1481	9	Antisense	novelGene_ENSMUSG00000024911.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	122	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGACTTCCGGGAGTTC	NA	False	NA	NA	False	NA	NA	NA	5515059	5510654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_5510802_5510981_5511185_5511414_5511543_5512557_5512658_5513195_5513358_5513633_5513739_5513812_5514242_5514359_5514459_5514951
67802	chrX	-	2790	2	NNC	ENSMUSG00000083114.2	novel	1293	2	NA	NA	-1240	477	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTAAGCCTTCTGGGTAGG	NA	False	NA	NA	False	NA	NA	NA	93027315	93024197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93024324_93024651
67803	chr2	+	762	6	NNC	ENSMUSG00000017723.12	novel	849	5	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_4	216.583101833915	2184	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTATAACACCTGCTTGC	233	False	NA	NA	False	NA	NA	NA	164404618	164410421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164409269_164409312_164410254
67804	chr18	-	2134	16	Antisense	novelGene_ENSMUSG00000024421.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	12	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCAGATACAGAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	12675412	12657559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_12657674_12657786_12657888_12658076_12658233_12658840_12659038_12660609_12660723_12661356_12661505_12661769_12661909_12662560_12662664_12664886_12665006_12665092_12665269_12667015_12667160_12670741_12670938_12672772_12672889_12673033_12673171_12673598_12673724_12675362
67805	chr4	-	1085	7	NNC	ENSMUSG00000055401.15	novel	1346	6	NA	NA	-75	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	339.49504987391	1	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTTTTCAGTAACCCA	NA	False	NA	NA	False	NA	NA	NA	148236178	148230263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148230464_148230512_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236070
67806	chr2	+	2339	10	Genic_Genomic	ENSMUSG00000044916.11	novel	416	2	NA	NA	1028	3585	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	8	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGAGGGGAGTCAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	92214290	92219638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_92214766_92215067_92215170_92215269_92215337_92215487_92215611_92215759_92215868_92216139_92216315_92216709_92216786_92216916_92217728_92217897_92217980_92219318
67807	chr13	-	1138	2	Intergenic	novelGene_1334	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	17	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATGCCTTTTAGCAGAT	NA	False	NA	NA	False	NA	NA	NA	31861730	31856400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_31857213_31861404
67810	chr7	+	1629	2	ISM	ENSMUSG00000063623.5	ENSMUST00000239047.2	2933	3	6777	638	6161	93	3prime_fragment	TRUE	canonical	0	0	junction_1	0	12	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGACGTGGGATGTTGT	NA	False	NA	NA	False	NA	NA	NA	29662587	29669139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_29662667_29667589
67811	chr6	+	1146	2	Antisense	novelGene_ENSMUSG00000033182.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTACCCTCATGGATTTT	NA	False	NA	NA	False	NA	NA	NA	88565365	88569763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_88565676_88568927
67812	chr8	+	1345	7	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	2	-19	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	132.221720353856	192	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTTCAACTTTGAGAAG	NA	False	NA	NA	False	NA	NA	NA	96442544	96445619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
67814	chr7	-	1141	4	NIC	ENSMUSG00000038782.8	novel	1306	5	NA	NA	27	-2	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	1.24721912892465	54	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAATTCTCAGTATCTGA	NA	False	NA	NA	False	NA	NA	NA	43896092	43879358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_43880066_43880749_43880897_43881779_43881981_43896006
67815	chr19	-	1897	12	ISM	ENSMUSG00000054874.13	ENSMUST00000068169.12	5276	33	13148	1187	-1054	164	internal_fragment	TRUE	canonical	3	106	junction_11	8.95535298619982	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGCTGGCTGTAATAGCG	6686	False	NA	NA	False	NA	NA	NA	5725029	5715854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5715870_5716177_5716453_5716536_5716768_5716862_5717011_5717176_5717281_5717406_5717638_5721550_5721805_5722474_5722691_5722785_5722845_5723252_5723383_5723507_5723617_5724904
67816	chr19	-	416	1	ISM	ENSMUSG00000054874.13	ENSMUST00000113615.9	7264	35	23846	12	1136	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGATTTTGGTTGGCAG	6742	False	NA	NA	False	NA	NA	NA	5715090	5714674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5714700_5715100
67817	chr9	+	2328	7	NNC	ENSMUSG00000032202.12	novel	3168	7	NA	NA	19299	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5.59761854124889	20	29	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTCCAGTATATCAAGTT	1324	False	NA	NA	False	NA	NA	NA	72971564	73004894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72971674_72982674_72982850_72989683_72989770_72992212_72992317_72994358_72994483_73002539_73003924_73004548
67819	chr9	+	432	3	NNC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	292	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3091	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108776776	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108776827_108776923_108777117_108778502
67820	chr9	-	1664	1	Genic_Genomic	ENSMUSG00000032507.16	novel	NA	NA	NA	NA	-34	-41120	mono-exon	FALSE	NA	NA	NA	NA	NA	16	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTCTTGTTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	113875293	113873629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_113873600_113875300
67824	chr5	-	1580	5	NNC	ENSMUSG00000053134.14	novel	2693	5	NA	NA	2154	18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	33.007574888198	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACGTCAGCAATTCATTC	NA	False	NA	NA	False	NA	NA	NA	31680458	31672647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680257_31680323
67825	chr18	+	2509	1	Intergenic	novelGene_4525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGCCCTTCCAGGGGA	NA	False	NA	NA	False	NA	NA	NA	34911274	34913783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_34911300_34913800
67827	chrX	-	1580	1	Intergenic	novelGene_3990	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATTTCTAGGTATGTGT	NA	False	NA	NA	False	NA	NA	NA	100244737	100243157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_100243200_100244700
67828	chrX	-	297	1	Intergenic	novelGene_3989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAATGTATGGAAATTG	NA	False	NA	NA	False	NA	NA	NA	100243003	100242706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_100242700_100243000
67829	chr14	+	1528	10	NNC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	-20	-47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	131.034158208018	4	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAATCTAGGTGTGTGAT	8866	False	NA	NA	False	NA	NA	NA	122116011	122258399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361_122257701_122258284
67830	chr7	-	1294	4	Fusion	ENSMUSG00000070424.13_ENSMUSG00000066279.4	novel	1713	5	NA	NA	3435	-2	intron_retention	FALSE	canonical	0	0	junction_3	2.86744175568088	5	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACATGGCTTTTATGAC	NA	False	NA	NA	False	NA	NA	NA	101762485	101746088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_101746428_101746514_101746548_101746987_101747718_101762293
67831	chr14	+	851	5	Intergenic	novelGene_590	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.866025403784439	29	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGACTATTTAGGGAAT	NA	False	NA	NA	False	NA	NA	NA	63747112	63751575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_63747241_63748106_63748240_63748318_63748371_63750719_63750912_63751229
67832	chr12	+	2372	2	FSM	ENSMUSG00000113835.2	ENSMUST00000220934.2	2076	2	-37	-259	-37	259	multi-exon	FALSE	canonical	1	2	junction_1	0	21	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTGTGTCTGAGATCC	3314	False	NA	NA	False	NA	NA	NA	105866062	105868668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105866201_105866434
67833	chr8	-	644	1	ISM	ENSMUSG00000051495.9	ENSMUST00000054960.9	5080	2	560	4487	560	-4487	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACCCACAAACGCCCGGC	NA	False	NA	NA	False	NA	NA	NA	127320165	127319521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_127319500_127320200
67834	chr15	-	827	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	7	4	7	-4	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	1721	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGATTCAAGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	80148509	80144819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
67835	chr4	-	1284	7	NIC	ENSMUSG00000028772.20	novel	2113	8	NA	NA	14	200	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	104.381378713936	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTTATTCCTATAATCCT	NA	False	NA	NA	False	NA	NA	NA	130253695	130209871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_130210602_130220985_130221132_130223366_130223468_130232276_130232378_130243057_130243116_130247928_130248050_130253668
67839	chr2	-	1535	1	Intergenic	novelGene_2625	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATTATATCATCTGCAA	NA	False	NA	NA	False	NA	NA	NA	51306619	51305084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_51305100_51306600
67840	chr3	+	1706	3	FSM	ENSMUSG00000027996.14	ENSMUST00000029625.8	2003	3	292	5	48	-5	multi-exon	FALSE	canonical	3	19	junction_1	5.5	19	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTCTTTGTCTTCTGTCA	NA	False	NA	NA	False	NA	NA	NA	83673919	83681618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_83674351_83676632_83676714_83680424
67841	chr1	-	934	3	FSM	ENSMUSG00000016481.16	ENSMUST00000193719.2	3859	3	-26	2951	1	328	multi-exon	FALSE	canonical	3	104	junction_2	96	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAACATGACTTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	194813868	194811173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_194811555_194812137_194812318_194813495
67842	chr17	-	847	5	NIC	ENSMUSG00000024145.7	novel	988	6	NA	NA	43	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	138.373588520353	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGATTGTGGCTTCAGAT	NA	False	NA	NA	False	NA	NA	NA	87332791	87304689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_87304996_87316230_87316340_87327828_87327946_87331092_87331342_87332725
67843	chr2	-	984	4	NNC	ENSMUSG00000078861.9	novel	1372	3	NA	NA	-175	-2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	40.2326567189723	67	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCAAATTTTAAAAGAATT	NA	False	NA	NA	False	NA	NA	NA	177720444	177710284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177710787_177711347_177711409_177711615_177711743_177720150
67844	chr9	+	892	2	Antisense	novelGene_ENSMUSG00000035047.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATTCCTAGAGCAGGAAA	NA	False	NA	NA	False	NA	NA	NA	21195870	21197973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_21196666_21197876
67845	chr9	+	1167	1	Antisense	novelGene_ENSMUSG00000035047.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCGCAGCAAACGCTGCGT	1279	False	NA	NA	False	NA	NA	NA	21198025	21199192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_21198000_21199200
67846	chr6	+	3546	6	NNC	ENSMUSG00000042607.16	novel	1143	4	NA	NA	-65689	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.68781778291716	12	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCTCTGGCGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	5317696	5433018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_5317981_5390598_5390796_5398223_5398524_5423341_5423833_5429739_5429854_5430858
67847	chr7	-	371	3	ISM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	1204	12	293	2	3prime_fragment	FALSE	canonical	3	29497	junction_1	199.5	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACAGAACAGGCTTGGA	NA	False	NA	NA	False	NA	NA	NA	44772659	44771814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44771983_44772252_44772383_44772586
67848	chr7	-	893	5	NIC	ENSMUSG00000025466.20	novel	1685	6	NA	NA	-10	-7	combination_of_known_junctions	FALSE	canonical	3	140	junction_4	143.095029613191	406	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGAACTTGTCTTG	1936	False	NA	NA	False	NA	NA	NA	139681889	139679393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
67849	chr15	+	1809	12	Antisense	novelGene_ENSMUSG00000023015.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	87	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAACGGCAGTGTAAAAC	NA	False	NA	NA	False	NA	NA	NA	99523677	99549489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99524265_99524344_99524438_99526513_99526678_99528994_99529118_99529958_99530074_99530593_99530676_99532119_99532180_99534015_99534103_99535546_99535652_99537497_99537700_99540764_99540855_99549388
67850	chr5	+	866	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	65	-3	65	0	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	2568	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	145077289	145084884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
67851	chr3	+	1738	1	FSM	ENSMUSG00000044528.6	ENSMUST00000058994.6	3889	1	259	1892	259	-1892	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATGACATGTGTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	124114762	124116500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_124114800_124116500
67852	chr8	+	1050	4	ISM	ENSMUSG00000009628.15	ENSMUST00000149399.8	706	6	10493	-538	9907	538	3prime_fragment	FALSE	canonical	3	13	junction_1	1.4142135623731	1	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCACAGAAGACAAACTT	NA	False	NA	NA	False	NA	NA	NA	34017258	34047908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_34017328_34029640_34029777_34036214_34036381_34047229
67853	chr4	-	1959	5	NIC	ENSMUSG00000042558.17	novel	1672	6	NA	NA	25	1	intron_retention	FALSE	canonical	3	286	junction_2	42.9418211071678	174	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCATGTCCTGTTCCTG	7101	False	NA	NA	False	NA	NA	NA	126215471	126209843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126210659_126211095_126211698_126211776_126211985_126212191_126212289_126215234
67854	chr1	+	2253	13	NNC	ENSMUSG00000026353.10	novel	4113	13	NA	NA	220	716	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	108.379317163788	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCTGTGTCCTAGGTT	314	False	NA	NA	False	NA	NA	NA	128172118	128205473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186746_128187183_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
67855	chr4	-	1781	7	NIC	ENSMUSG00000058498.13	novel	2466	17	NA	NA	-172	-6	intron_retention	FALSE	canonical	3	8	junction_6	5.99305153212173	26	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAAAGAAGAGTACAGTG	NA	False	NA	NA	False	NA	NA	NA	152398032	152391481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_152392074_152393294_152393361_152395840_152396281_152396527_152396714_152396846_152397034_152397643_152397742_152397820
67856	chrX	+	1296	10	NNC	ENSMUSG00000043384.16	novel	5611	10	NA	NA	0	-4375	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_6	52.1813078495441	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCAAAGGCTGAAAATAAGC	NA	False	NA	NA	False	NA	NA	NA	134643481	134699840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134643728_134644311_134644364_134645247_134645325_134649404_134649532_134652693_134652767_134698301_134698447_134698536_134698614_134698771_134698844_134699139_134699223_134699496
67857	chr4	+	487	4	NNC	ENSMUSG00000028773.9	novel	823	4	NA	NA	218	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2135.19028556135	4	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGTTGTCTGTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	130202605	130209252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130202644_130206083_130206143_130207746_130207849_130208964
67858	chr6	+	2250	5	NNC	ENSMUSG00000030365.12	novel	933	5	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.433012701892219	4	42	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGGACTTCATTTATGCG	NA	False	NA	NA	False	NA	NA	NA	128864560	128875136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_128864630_128870578_128870712_128871631_128871811_128872289_128872397_128873374
67860	chr3	+	414	4	ISM	ENSMUSG00000025764.15	ENSMUST00000195846.6	543	6	-28	4779	1	107	5prime_fragment	FALSE	canonical	3	773	junction_2	45.9879211194515	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCACCCTGGATAGACGC	NA	False	NA	NA	False	NA	NA	NA	41510166	41546276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117
67861	chr16	+	462	4	NIC	ENSMUSG00000046516.11	novel	444	3	NA	NA	-3	-9	combination_of_known_junctions	FALSE	canonical	3	81	junction_3	1753.17641883398	105	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAACCGTCTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	38167380	38173116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38167570_38169602_38169692_38170038_38170094_38172987
67862	chr1	-	1585	5	FSM	ENSMUSG00000002459.18	ENSMUST00000002533.15	1778	5	175	18	15	-18	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	8	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTTAATTTTTAATGAA	NA	False	NA	NA	False	NA	NA	NA	5089587	4979816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_4980886_4982536_4982772_4987119_4987204_4994069_4994213_5089533
67863	chr19	-	899	4	FSM	ENSMUSG00000050623.6	ENSMUST00000236981.2	897	4	12	-14	-1	14	multi-exon	FALSE	canonical	3	38	junction_2	4.10960933531265	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAATCCTAGAGAAATTA	7417	False	NA	NA	False	NA	NA	NA	6902721	6899833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161
67864	chr1	-	2259	1	Antisense	novelGene_ENSMUSG00002075980.1_AS_novelGene_ENSMUSG00000037408.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCGAAGGTAGGCTGGGGG	9718	False	NA	NA	False	NA	NA	NA	36547821	36545562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_36545600_36547800
67865	chr7	+	1461	4	NIC	ENSMUSG00000055629.6	novel	3076	16	NA	NA	49	-9	intron_retention	FALSE	canonical	3	206	junction_1	10.8012344973464	158	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTGACTTGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	140650236	140652304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140650855_140650954_140651275_140651549_140651677_140651908
67866	chr1	+	1463	9	ISM	ENSMUSG00000034066.14	ENSMUST00000120301.8	3937	27	97897	200	97864	-200	3prime_fragment	FALSE	canonical	0	0	junction_1	2.31503239718152	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCACCCACCAGCATCCC	NA	False	NA	NA	False	NA	NA	NA	93537697	93549498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_93537829_93540113_93540183_93540839_93540930_93545273_93545357_93546224_93546344_93546614_93546773_93547875_93547984_93548214_93548367_93548945
67868	chr18	-	1041	3	ISM	ENSMUSG00000024286.9	ENSMUST00000234779.2	1341	7	53870	0	53870	0	3prime_fragment	FALSE	canonical	3	74	junction_1	9	9	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATCTCTGCTCCATTT	NA	False	NA	NA	False	NA	NA	NA	9332939	9315950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_9316673_9319408_9319572_9332783
67871	chr2	-	830	1	Intergenic	novelGene_2704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTCTGCAAGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	128901642	128900812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_128900800_128901600
67873	chr19	+	1246	3	FSM	ENSMUSG00000024854.5	ENSMUST00000237518.2	631	3	-70	-545	17	-1	multi-exon	FALSE	canonical	3	48	junction_1	2	5	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTCTGACCTTACATCT	NA	False	NA	NA	False	NA	NA	NA	4281969	4283684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4282243_4282516_4282607_4282801
67874	chr7	-	1706	7	ISM	ENSMUSG00000038663.8	ENSMUST00000042318.6	3985	13	17928	1135	17928	-1135	3prime_fragment	TRUE	canonical	1	1	junction_1	2.40947204913349	28	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCAGAATAAACCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	81198764	81184190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_81184997_81186878_81187056_81190059_81190193_81191787_81191922_81194707_81194859_81195604_81195740_81198594
67877	chr2	+	2446	9	ISM	ENSMUSG00000059013.13	ENSMUST00000113242.5	3107	11	17045	520	3259	-2	3prime_fragment	FALSE	canonical	1	2	junction_4	3.78937659780603	13	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCTGTCCCATGAGGC	552	False	NA	NA	False	NA	NA	NA	32634762	32645004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32634892_32635846_32636302_32637033_32637159_32639164_32639698_32640963_32641080_32641525_32641698_32642625_32642738_32643000_32643208_32644407
67878	chr18	-	1560	15	FSM	ENSMUSG00000044252.19	ENSMUST00000132594.8	2353	15	48	745	-1	-745	multi-exon	FALSE	canonical	3	97	junction_4	10.9584093140327	5	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAATGAAAACTTCACTT	NA	False	NA	NA	False	NA	NA	NA	13074850	13004019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
67879	chr19	+	1121	3	FSM	ENSMUSG00000110949.2	ENSMUST00000122924.2	1082	3	-37	-2	14	0	multi-exon	FALSE	canonical	3	76	junction_1	4	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3527	False	NA	NA	False	NA	NA	NA	4050593	4052103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4051329_4051627_4051706_4051795
67880	chr9	+	775	4	NNC	ENSMUSG00000032171.8	novel	3843	4	NA	NA	3281	-2893	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1282.18312091353	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTGGTCCTGTATCATT	NA	False	NA	NA	False	NA	NA	NA	20566671	20574987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20566737_20566794_20566877_20573593_20573705_20574470
67881	chr16	-	1429	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	206	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	81.8299388298005	1	31	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGATATAAGAAATTCACT	4094	False	NA	NA	False	NA	NA	NA	18245148	18225641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18226036_18226449_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
67884	chr8	+	914	10	Antisense	novelGene_ENSMUSG00000110471.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	50	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGGGGAGCAGCACTCCC	NA	False	NA	NA	False	NA	NA	NA	84298374	84321064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_84298581_84298847_84298953_84299029_84299085_84299177_84299224_84299465_84299579_84299674_84299755_84299841_84299952_84300500_84300547_84301100_84301156_84320966
67885	chr7	+	1528	5	FSM	ENSMUSG00000053091.17	ENSMUST00000128486.8	1419	5	26	-135	4	135	multi-exon	FALSE	canonical	3	44	junction_3	17.682972035266	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTATTTTTTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	66339722	66359785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041
67886	chr6	-	2424	11	FSM	ENSMUSG00000030047.15	ENSMUST00000101197.9	2493	11	36	33	36	-33	multi-exon	FALSE	canonical	0	0	junction_4	1.26885775404495	5	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGAGAAAATTATATTCAA	NA	False	NA	NA	False	NA	NA	NA	87473260	87436419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87437116_87439912_87440446_87442482_87442680_87443454_87443577_87444894_87444969_87447494_87447628_87453124_87453333_87465173_87465291_87469159_87469248_87472894_87473095_87473204
67887	chr7	-	956	4	NNC	ENSMUSG00000063511.12	novel	579	4	NA	NA	14	240	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	715.906884075483	31	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGGTCAGAAATTATAACA	9055	False	NA	NA	False	NA	NA	NA	45045152	45041007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45041558_45041686_45041750_45044082_45044211_45044937
67888	chr3	-	1439	5	NNC	ENSMUSG00000105662.5	novel	429	4	NA	NA	404	-3689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.7732867026942	2	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATTATACCTCCTATT	NA	False	NA	NA	False	NA	NA	NA	35691310	35676651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_35677418_35678500_35678611_35681522_35681682_35682985_35683124_35691044
67889	chr6	-	1291	5	FSM	ENSMUSG00000030035.15	ENSMUST00000032111.11	1419	5	125	3	-28	-2	multi-exon	FALSE	canonical	3	121	junction_4	18.4390889145858	294	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGATTCTGGGTA	NA	False	NA	NA	False	NA	NA	NA	83098415	83096027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097858_83098183
67892	chr2	+	1459	5	Antisense	novelGene_ENSMUSG00000027122.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCACACCACCGCCGGC	NA	False	NA	NA	False	NA	NA	NA	106795157	106804708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_106795659_106795711_106795994_106797446_106797572_106799415_106799904_106804645
67893	chr11	-	1081	1	Intergenic	novelGene_2526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATGTATGGGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	115352788	115351707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_115351700_115352800
67894	chr1	+	1752	4	FSM	ENSMUSG00000070532.6	ENSMUST00000094348.4	1731	4	-18	-3	-18	3	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	15	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTCTCCTTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	169756198	169762225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_169756573_169757487_169757730_169760563_169760685_169761210
67895	chr7	+	751	3	NNC	ENSMUSG00000035585.17	novel	1319	4	NA	NA	20	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	597.5	56	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTATTTTGAGTCCTT	2953	False	NA	NA	False	NA	NA	NA	3697541	3704009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3697844_3697976_3698203_3703786
67897	chr14	-	844	4	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	876.113006409561	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8629	False	NA	NA	False	NA	NA	NA	54855474	54851575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54851939_54853971_54854279_54855250_54855308_54855357
67898	chr1	-	840	7	NNC	ENSMUSG00000026035.16	novel	896	7	NA	NA	11	-6	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_6	66.6149799636355	284	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCACATGTGAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	58484630	58470161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484525
67899	chr5	-	567	1	Genic_Genomic	ENSMUSG00000073147.4	novel	NA	NA	NA	NA	10428	89	mono-exon	FALSE	NA	NA	NA	NA	NA	32	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTTTTATTTTGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	23627879	23627312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_23627300_23627900
67900	chr15	-	736	4	FSM	ENSMUSG00000044678.12	ENSMUST00000060301.6	791	4	46	9	46	-9	multi-exon	FALSE	canonical	3	104	junction_3	10.2740233382816	617	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCGTCACCTCTTGGTT	822	False	NA	NA	False	NA	NA	NA	74671789	74668731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_74669121_74670383_74670483_74671267_74671345_74671618
67901	chr5	-	1226	9	FSM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	12	79	-3	-11	multi-exon	FALSE	canonical	3	280	junction_1	24.5098832106561	1655	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTACCTAGTAATGTATC	NA	False	NA	NA	False	NA	NA	NA	151574695	151566299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
67903	chr11	+	2548	2	Antisense	novelGene_ENSMUSG00002075685.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCTTCAATTTAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	3593888	3597470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_3595528_3596561
67904	chr2	-	974	9	NIC	ENSMUSG00000078919.11	novel	2293	9	NA	NA	8	-7	combination_of_known_junctions	FALSE	canonical	2	32	junction_2	140.419683449294	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATAAAATGTTGCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	168072274	168052208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_168052557_168053285_168053348_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
67906	chr10	-	997	2	ISM	ENSMUSG00000003341.10	ENSMUST00000020383.6	4412	28	17227	10	17193	-10	3prime_fragment	FALSE	canonical	3	11	junction_1	0	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGCTCACTCCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	80357731	80355427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_80356297_80357603
67911	chr12	+	797	5	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-4	-212	combination_of_known_splicesites	FALSE	canonical	1	8	junction_4	187.52666477064	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	NA	False	NA	NA	NA	21366399	21373608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21373289
67913	chr15	-	1707	8	NNC	ENSMUSG00000022206.8	novel	2437	8	NA	NA	1025	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	11.2811925842284	28	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAGAGCACGGAGGAG	2505	False	NA	NA	False	NA	NA	NA	11904700	11844479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11845375_11846383_11846469_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904630
67915	chr19	+	483	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	-81	-6	-81	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTGGCTGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59310721	59311204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_59310700_59311200
67916	chr10	-	1493	6	NNC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	52.073025646682	5	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCACACCCGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	127031589	127026248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127026909_127027204_127027423_127028477_127028767_127029598_127029673_127030278_127030504_127031562
67917	chr12	-	1025	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	-17	2	-17	-2	multi-exon	FALSE	canonical	3	177	junction_1	0	928	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGCCTGGGTCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	76842290	76839112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_76839775_76841927
67918	chr9	+	1608	1	FSM	ENSMUSG00000093803.6	ENSMUST00000217354.3	2557	1	317	632	281	488	mono-exon	FALSE	NA	NA	NA	NA	NA	8	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAATTATGTTTGGAAAG	NA	False	NA	46	True	NA	NA	NA	124202519	124204127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_124202500_124204100
67919	chr11	-	873	5	FSM	ENSMUSG00000018774.14	ENSMUST00000154124.2	612	5	-168	-93	-77	0	multi-exon	FALSE	canonical	3	24	junction_4	48.9540600971972	116	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3173	False	NA	NA	False	NA	NA	NA	69557056	69555038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556845
67920	chr11	-	874	4	FSM	ENSMUSG00000000384.16	ENSMUST00000131815.8	853	4	-45	24	0	-24	multi-exon	FALSE	canonical	3	41	junction_1	235.927013195936	69	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGACCTTCAAAGAATAAAA	NA	False	NA	NA	False	NA	NA	NA	6576067	6573223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6573462_6573815_6574284_6575148_6575214_6575964
67921	chr17	-	1941	4	ISM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	169	3762	-15	-28	5prime_fragment	FALSE	canonical	3	58	junction_1	6.37704215656966	31	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGCATTAAACTGGAAATT	NA	False	NA	NA	False	NA	NA	NA	36582290	36573526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_36574852_36578016_36578113_36579500_36579959_36582228
67922	chr14	+	942	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	138	598	10	224	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	3078	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAAATGCATGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	29690402	29697021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
67923	chr18	-	2713	1	NIC	ENSMUSG00000097330.3	novel	2685	3	NA	NA	2	-10710	mono-exon	FALSE	NA	NA	NA	NA	NA	4	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTCTAATCAATCAATGAAG	NA	False	NA	NA	False	NA	NA	NA	37901293	37898580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_37898600_37901300
67924	chr7	-	751	5	NNC	ENSMUSG00000003380.12	novel	899	5	NA	NA	-25	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	317.991646902871	4	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATTGCTATTTGGCCAA	4586	False	NA	NA	False	NA	NA	NA	24672088	24669194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671688_24671938
67925	chr4	-	1589	1	ISM	ENSMUSG00000042763.10	ENSMUST00000064444.8	2727	4	5314	30	5314	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	36	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAGAAAAATAAACCATT	1528	False	NA	NA	False	NA	NA	NA	124750650	124749061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_124749100_124750600
67927	chr4	+	1542	6	NNC	ENSMUSG00000028689.15	novel	1237	10	NA	NA	31	-33	intron_retention	FALSE	canonical	0	0	junction_1	33.8017751013168	2	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGCTAATTCAAAATAAAG	5712	False	NA	NA	False	NA	NA	NA	116565861	116572263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116566400_116566439_116566817_116566920_116567003_116567297_116567482_116571212_116571347_116572036
67928	chr10	-	1983	3	NNC	ENSMUSG00000048756.12	novel	6848	4	NA	NA	8	691	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	64	1	90	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTCTGCTTCTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	42152684	42061090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42062292_42072461_42073121_42152561
67929	chr4	-	938	7	ISM	ENSMUSG00000006216.11	ENSMUST00000006378.9	2370	20	7643	16	-3014	-16	3prime_fragment	FALSE	canonical	3	53	junction_6	23.8146780135464	128	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGTCTGGAGCCATTAG	4121	False	NA	NA	False	NA	NA	NA	141135682	141131679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135616
67931	chr2	-	1284	1	Intergenic	novelGene_2666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTCTAAATCTTTGTTT	6531	False	NA	NA	False	NA	NA	NA	84418734	84417450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_84417400_84418700
67932	chr19	+	2345	10	NIC	ENSMUSG00000004054.10	novel	3898	12	NA	NA	358	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	24.7206616236522	34	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAAATGTAATGTCACC	NA	False	NA	NA	False	NA	NA	NA	5739519	5752885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5739541_5745188_5745370_5745524_5745674_5745759_5745936_5746034_5746279_5746711_5746826_5747371_5747508_5747585_5747678_5750617_5750999_5752034
67933	chr11	+	1015	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	258	3	-19	-3	multi-exon	FALSE	canonical	3	104	junction_1	13.3603892158874	269	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGACTACTCCCAATCATT	8926	False	NA	NA	False	NA	NA	NA	116734361	116740563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
67934	chr17	+	2317	7	ISM	ENSMUSG00000033826.11	ENSMUST00000235627.2	13478	83	91852	85867	-2198	562	internal_fragment	FALSE	canonical	3	32	junction_1	4.45034330760623	5	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGTTAATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30937816	30949420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_30938042_30939972_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054
67935	chr11	+	1303	3	NIC	ENSMUSG00000033983.15	novel	2607	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	203	10	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	NA	False	NA	NA	False	NA	NA	NA	88864760	88882439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88865029_88878804_88878894_88881493
67937	chr5	-	1164	9	NNC	ENSMUSG00000025747.13	novel	3884	8	NA	NA	1	66	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	903.190447455574	2	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCTTTCAGTGATGCT	NA	False	NA	NA	False	NA	NA	NA	30278611	30265995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30266132_30266965_30267034_30268233_30268410_30269082_30269185_30273463_30273639_30274831_30274929_30276224_30276308_30276631_30276706_30278358
67938	chr7	+	1237	4	ISM	ENSMUSG00000063903.6	ENSMUST00000075162.5	954	5	79	4	1	-4	intron_retention	FALSE	canonical	3	34	junction_1	15.7973274814304	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTTCAAGTTCTGACAT	NA	False	NA	NA	False	NA	NA	NA	43874862	43879038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43874949_43876944_43877105_43877951_43878239_43878334
67940	chr8	+	844	5	NNC	ENSMUSG00000031533.5	novel	2625	5	NA	NA	11	-185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	333.837535337176	184	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCCTGTGTTGATCATTG	NA	False	NA	NA	False	NA	NA	NA	22901424	22919496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911359_22919308
67941	chr11	-	1637	9	FSM	ENSMUSG00000018570.18	ENSMUST00000102580.10	1640	9	5	-2	5	2	multi-exon	FALSE	canonical	0	0	junction_1	6.57647321898295	56	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTGGGAGCTGCGTG	9731	False	NA	NA	False	NA	NA	NA	69791778	69788186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69788319_69788444_69788581_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
67942	chr4	+	677	3	FSM	ENSMUSG00000028643.12	ENSMUST00000030395.9	733	3	56	0	-45	0	multi-exon	FALSE	canonical	3	443	junction_2	4.5	851	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	119052558	119058495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_119052684_119053068_119053219_119058093
67943	chr15	-	804	4	NNC	ENSMUSG00000064284.13	novel	706	4	NA	NA	33	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	154.740643228166	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGATTTAAACCTTGAC	8171	False	NA	NA	False	NA	NA	NA	85695812	85691229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695743
67944	chr15	-	929	7	NNC	ENSMUSG00000055762.17	novel	896	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1668.72050951886	2	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	75781170	75767336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75767441_75767580_75767776_75768091_75768304_75768488_75768590_75768668_75768762_75772931_75773079_75781093
67945	chr11	+	767	5	NNC	ENSMUSG00000040767.11	novel	821	5	NA	NA	-14	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	182.019744808084	106	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAAGCCATAGTACTCT	NA	False	NA	NA	False	NA	NA	NA	32155431	32158989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158726
67946	chr1	+	1265	8	Antisense	novelGene_ENSMUSG00000026458.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAGGCGGAGCTTGAGC	NA	False	NA	NA	False	NA	NA	NA	134226114	134240326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_134226567_134227028_134227206_134228206_134228276_134231341_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273
67947	chr8	+	1571	1	FSM	ENSMUSG00000050930.6	ENSMUST00000053078.5	3542	1	1933	38	1933	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	29	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTTCTGTGTATTTAA	NA	False	NA	NA	False	NA	NA	NA	126398489	126400060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_126398500_126400100
67948	chr8	+	676	1	FSM	ENSMUSG00000050930.6	ENSMUST00000053078.5	3542	1	3504	-638	3504	638	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATTTTGTAAGACATAGC	NA	False	NA	-36	True	NA	NA	NA	126400060	126400736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_126400100_126400700
67950	chr8	+	1025	7	FSM	ENSMUSG00000031622.17	ENSMUST00000109950.5	1024	7	-1	0	-1	0	multi-exon	FALSE	canonical	3	644	junction_5	27.2197844713485	1584	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTATGTGCAGCAGT	NA	False	NA	NA	False	NA	NA	NA	73449911	73466534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
67951	chr11	+	1890	4	NNC	ENSMUSG00000001558.6	novel	2017	5	NA	NA	-789	-45	intron_retention	FALSE	canonical	0	0	junction_1	13.9124245031395	5	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAGAATTAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	100331953	100347803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100332042_100336208_100336699_100337946_100338565_100347109
67953	chr17	+	2412	2	Antisense	novelGene_ENSMUSG00000038045.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	2	45	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCATTTTGGTCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	79189473	79192264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_79189511_79189889
67955	chr5	-	1153	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	114.841073759445	18	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9625	False	NA	NA	False	NA	NA	NA	137599313	137594906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137595035_137595095_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599252
67956	chr2	+	1783	4	FSM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	19	23	10	-6	multi-exon	TRUE	canonical	3	65	junction_2	3.55902608401044	94	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAGCACTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180224534	180228074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180224749_180225193_180225316_180226198_180226665_180227093
67957	chr19	-	987	3	NNC	ENSMUSG00000024939.7	novel	1197	2	NA	NA	-22	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	43.5	100	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGATTGCCTGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	5779703	5778115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5778897_5779264_5779313_5779545
67958	chr4	+	825	4	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-8	3406	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	190.482428469283	96	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTCATGGATATTCTGA	NA	False	NA	NA	False	NA	NA	NA	146586475	146627258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586602_146616526_146616611_146619877_146620005_146626770
67959	chr6	-	1165	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	148	1	-5	0	multi-exon	FALSE	canonical	3	41	junction_3	56.6627449623354	71	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	NA	False	NA	NA	NA	83098392	83096025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
67960	chr16	+	1199	3	FSM	ENSMUSG00000022947.9	ENSMUST00000039620.7	1170	3	-32	3	-32	-3	multi-exon	FALSE	canonical	3	122	junction_2	11	194	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTATTTGGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	93480070	93487875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_93480502_93481934_93482043_93487215
67961	chr2	-	631	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	19	5	19	-5	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	1194	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCACTCGTGCGTTATGTT	NA	False	NA	NA	False	NA	NA	NA	76190775	76184290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
67962	chr7	-	930	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	11	181	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.5	1107	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGGCTCTGGCTTTCCTT	2913	False	NA	NA	False	NA	NA	NA	19307299	19298689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19298802_19298849_19299602_19307233
67963	chr10	+	1178	2	FSM	ENSMUSG00000091779.9	ENSMUST00000180664.2	1185	2	-20	27	-20	-27	multi-exon	FALSE	canonical	3	5	junction_1	0	93	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTATTCTGGAGTCATA	NA	False	NA	NA	False	NA	NA	NA	103979242	103981290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_103979308_103980177
67964	chr2	+	747	7	NNC	ENSMUSG00000002728.15	novel	1172	6	NA	NA	0	-104	at_least_one_novel_splicesite	FALSE	non_canonical	3	24	junction_6	516.133515241508	374	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAAGTTTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	145745176	145758241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723_145757808_145758112
67965	chr3	+	474	5	NNC	ENSMUSG00000042747.13	novel	1172	5	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	761.721200637083	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7585	False	NA	NA	False	NA	NA	NA	89153734	89157030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89153823_89154084_89154240_89154371_89154403_89156400_89156448_89156877
67968	chr7	-	1303	9	NNC	ENSMUSG00000001794.14	novel	1429	11	NA	NA	-10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	705.584686625213	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCGGACTCTGAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	29894483	29886415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29886959_29887095_29887147_29889476_29889594_29889903_29889970_29890083_29890123_29891577_29891652_29891898_29892018_29893285_29893527_29894430
67969	chr17	+	1403	5	ISM	ENSMUSG00000061130.14	ENSMUST00000234332.2	1290	6	35335	-163	31	-10	3prime_fragment	FALSE	canonical	3	54	junction_4	659.487869486619	16	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTGGTAGCACTGTGG	NA	False	NA	NA	False	NA	NA	NA	85301138	85331409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85331123
67970	chr3	+	1134	7	Antisense	novelGene_ENSMUSG00000027506.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCGGCCGCCCGCGCAGTC	NA	False	NA	NA	False	NA	NA	NA	8994504	9069547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_8994904_8995996_8996226_9000044_9000101_9009670_9009773_9012540_9012687_9018740_9018858_9069462
67971	chr6	+	2716	1	ISM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	115335	26	21449	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	11	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTAATAAAAAGTTACATA	NA	False	NA	NA	False	NA	NA	NA	31491004	31493720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_31491000_31493700
67972	chr9	+	1614	1	Intergenic	novelGene_1181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTCCTACATTAGGATCA	NA	False	NA	NA	False	NA	NA	NA	121196519	121198133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_121196500_121198100
67975	chr9	+	1827	15	Antisense	novelGene_ENSMUSG00000032198.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	5	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCGCTCCGAGGCCGCCA	209	False	NA	NA	False	NA	NA	NA	21748647	21763863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_21748848_21750046_21750210_21750438_21750532_21750647_21750777_21750920_21751071_21751169_21751248_21752784_21752939_21753205_21753279_21754233_21754314_21755501_21755715_21756738_21756866_21757045_21757126_21757794_21757969_21758478_21758568_21763839
67976	chr6	+	1154	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	29	1	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_5	1137.72760772296	1	65	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATACATTTGCTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	86986246	87005437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997703_86997822_87000109_87000171_87002467_87002643_87005276
67977	chr15	-	1709	2	Antisense	novelGene_ENSMUSG00000075394.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCTCCTACTAGCTAGC	NA	False	NA	NA	False	NA	NA	NA	102945278	102943094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_102943587_102944061
67978	chr7	+	298	1	ISM	ENSMUSG00000033685.14	ENSMUST00000126534.8	3988	8	5999	2387	990	331	mono-exon	FALSE	NA	NA	NA	NA	NA	36	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTCATATGTTTACAGA	NA	False	NA	NA	False	NA	NA	NA	100148542	100148840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_100148500_100148800
67979	chr17	-	2452	1	Antisense	novelGene_ENSMUSG00000098090.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAAAGTTTCCGCCCG	NA	False	NA	NA	False	NA	NA	NA	95059994	95057542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_95057500_95060000
67980	chr1	+	681	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	30	180	multi-exon	FALSE	canonical	3	66	junction_1	0	211	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAATGTTATTCTTAT	4191	False	NA	NA	False	NA	NA	NA	135159762	135161143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_135160090_135160789
67985	chr16	+	1320	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	-23	0	7	0	multi-exon	FALSE	canonical	3	70	junction_3	15.4171171105366	60	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	NA	False	NA	NA	NA	16964819	16966710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
67986	chr15	-	936	10	FSM	ENSMUSG00000115987.2	ENSMUST00000078803.5	911	10	-3	-22	-3	0	multi-exon	TRUE	canonical	3	892	junction_9	85.8889607589177	2568	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCGCCCTGTGTGATCT	9600	False	NA	NA	False	NA	NA	NA	76510277	76506286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
67987	chr1	+	219	1	Intergenic	novelGene_378	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGCATCTCGAAAGGGG	429	False	NA	NA	False	NA	NA	NA	63178182	63178401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_63178200_63178400
67989	chr7	+	300	1	ISM	ENSMUSG00000025467.9	ENSMUST00000026540.9	620	5	3502	4	3502	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAGGAATGCGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	139676809	139677109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_139676800_139677100
67990	chr7	+	1642	12	ISM	ENSMUSG00000030650.19	ENSMUST00000057320.8	2926	18	15715	8	15715	0	3prime_fragment	FALSE	canonical	1	1	junction_7	1.31110955471418	6	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGGATGCAAAGCCTCT	4808	False	NA	NA	False	NA	NA	NA	118248673	118274301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_118248821_118251732_118251885_118254139_118254219_118255981_118256080_118258760_118258854_118265757_118265834_118266049_118266184_118268389_118268564_118269881_118269961_118271397_118271503_118272645_118272689_118273839
67991	chr1	-	721	3	NNC	ENSMUSG00000060743.13	novel	2841	4	NA	NA	2	46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1168.5	1	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCTACATACAAGTACAT	NA	False	NA	NA	False	NA	NA	NA	180641110	180630215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180630711_180639363_180639515_180641035
67992	chr5	+	789	5	ISM	ENSMUSG00000060152.15	ENSMUST00000081497.13	1025	6	2148	27	5	-2	3prime_fragment	FALSE	canonical	3	535	junction_1	139.257629952545	676	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAAATGTGCACTTGCC	NA	False	NA	NA	False	NA	NA	NA	115376042	115379023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115376129_115376193_115376337_115378220_115378371_115378531_115378616_115378697
67994	chr17	+	1395	2	FSM	ENSMUSG00000044469.9	ENSMUST00000077788.7	2379	2	35	949	35	-949	multi-exon	FALSE	canonical	2	6	junction_1	0	35	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCAGCATGTAAGAATGC	448	False	NA	NA	False	NA	NA	NA	56469511	56480006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56469607_56478706
67995	chr2	-	2342	2	ISM	ENSMUSG00000035949.16	ENSMUST00000131534.8	1930	4	3255	-672	125	672	3prime_fragment	FALSE	canonical	3	474	junction_1	0	40	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGCAGTGACAGTGAAGC	NA	False	NA	NA	False	NA	NA	NA	34713068	34701178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_34703022_34712569
67996	chr11	-	1958	3	FSM	ENSMUSG00000049287.6	ENSMUST00000054523.6	4021	3	-3	2066	-3	-2066	multi-exon	FALSE	canonical	3	10	junction_1	4.5	26	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACAGCCCTTTCAGACCT	NA	False	NA	NA	False	NA	NA	NA	59054568	59048260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59049486_59049663_59050005_59054176
67997	chr7	+	1922	3	NNC	ENSMUSG00000051727.15	novel	2339	3	NA	NA	187	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	2	8	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTCATGTGTTCGTGGT	990	False	NA	NA	False	NA	NA	NA	97102615	97108756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_97102670_97106800_97108408_97108495
67998	chr17	-	1062	1	NIC	ENSMUSG00000024190.8	novel	1990	4	NA	NA	1071	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCCGTGCTTTCTTTGG	NA	False	NA	NA	False	NA	NA	NA	26725626	26724564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26724600_26725600
68000	chr12	+	629	1	Antisense	novelGene_ENSMUSG00000043483.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGAGTCTTGTTCCTC	NA	False	NA	NA	False	NA	NA	NA	96889078	96889707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_96889100_96889700
68002	chr5	-	1322	1	Antisense	novelGene_ENSMUSG00000023353.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGGCTACCACCTTCTG	1072	False	NA	NA	False	NA	NA	NA	24684354	24683032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_24683000_24684400
68003	chr8	-	1228	2	Antisense	novelGene_ENSMUSG00000034656.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAACAAAAAAAGTGAT	1396	False	NA	NA	False	NA	NA	NA	85335024	85333709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_85334415_85334501
68004	chr10	+	816	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	20	22	-2	-2	multi-exon	FALSE	canonical	3	475	junction_4	15.6025638918737	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGCTGTTAAACACTC	NA	False	NA	NA	False	NA	NA	NA	31189398	31204178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
68005	chrX	-	2314	1	ISM	ENSMUSG00000086503.5	ENSMUST00000127786.4	17946	7	15451	5124	-547	-4994	mono-exon	FALSE	NA	NA	NA	NA	NA	9	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAAAAAGTAACATGCTC	3770	False	NA	NA	False	NA	NA	NA	102511409	102509095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_102509100_102511400
68006	chr15	-	603	4	ISM	ENSMUSG00000022205.16	ENSMUST00000110504.2	675	5	3144	-63	1911	63	3prime_fragment	FALSE	canonical	3	7728	junction_1	254.309959607475	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGGTACCCTTTTTT	3028	False	NA	-51	True	NA	NA	NA	11993925	11984063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874
68007	chr7	+	910	1	Intergenic	novelGene_2997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACCTAACAACTTTCTA	NA	False	NA	NA	False	NA	NA	NA	95863735	95864645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_95863700_95864600
68008	chr11	+	747	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	12	0	0	0	multi-exon	FALSE	canonical	3	452	junction_2	10.7082522694727	944	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	69214900	69216619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
68009	chr4	+	1480	7	NIC	ENSMUSG00000028621.18	novel	2516	7	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	2	2	junction_6	5.37742193496723	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTTCTACAGTTATTAGA	963	False	NA	NA	False	NA	NA	NA	106924216	106945189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_106924243_106925808_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106944493
68010	chr17	+	1003	5	NNC	ENSMUSG00000072761.11	novel	526	4	NA	NA	-28	54409	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGTCTTGTTAAGCCT	NA	False	NA	NA	False	NA	NA	NA	17514676	17594182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17514852_17576408_17576481_17577933_17578098_17590167_17590297_17593719
68011	chr5	+	1012	7	Antisense	novelGene_ENSMUSG00000000568.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTGTCCCAGCTAAGG	NA	False	NA	NA	False	NA	NA	NA	100108950	100115208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100109191_100110371_100110472_100111589_100111736_100111841_100111943_100112528_100112659_100113878_100114041_100115075
68012	chr9	+	1569	3	Intergenic	novelGene_1097	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTAATCTGGTTTGACT	1393	False	NA	NA	False	NA	NA	NA	64174796	64179940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_64174881_64176949_64177082_64178587
68013	chr8	+	1114	9	NNC	ENSMUSG00000031820.10	novel	1433	9	NA	NA	6	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	114.903220146348	5	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTCAACCCCTCCCAAGT	NA	False	NA	NA	False	NA	NA	NA	71849510	71855940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71849665_71850322_71850470_71850591_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619
68014	chr5	+	923	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	174	4	116	-1	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGGCTGTCTGCAGTGGG	1378	False	NA	NA	False	NA	NA	NA	137639872	137641160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
68015	chr7	+	789	10	NNC	ENSMUSG00000030982.20	novel	1552	15	NA	NA	-2	-35	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	186.967878669896	4	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGATAAGGTTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	118339952	118365732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118339999_118342817_118342918_118345597_118345622_118345730_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587
68017	chr9	-	1449	1	FSM	ENSMUSG00000066839.13	ENSMUST00000217445.2	893	1	-692	136	-689	-136	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCGTGGTGGTACACGCC	5196	False	NA	NA	False	NA	NA	NA	21997423	21995974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21996000_21997400
68018	chr5	+	1393	14	NNC	ENSMUSG00000029414.12	novel	6961	64	NA	NA	-7766	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	191.760051000628	1	40	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCAATAAACTATGTGCA	NA	False	NA	NA	False	NA	NA	NA	123941689	123959625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_123941801_123945323_123945371_123947097_123947177_123948875_123948999_123949368_123949505_123950072_123950169_123950693_123950751_123952769_123952825_123953028_123953093_123954743_123954860_123956513_123956604_123957058_123957205_123957932_123958024_123959443
68019	chr18	-	553	2	ISM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	22	129	22	-129	intron_retention	FALSE	canonical	3	3066	junction_1	0	103	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTTCAGAATGTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	36877588	36875513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_36875712_36877233
68020	chr11	+	750	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	-1	0	-1	0	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	29	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	NA	False	NA	NA	NA	115294581	115301745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
68021	chr19	-	1322	8	NNC	ENSMUSG00000024799.17	novel	1297	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	118.205459316585	1	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	9992	False	NA	NA	False	NA	NA	NA	6117841	6112851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113855_6114021_6114108_6114229_6116340_6116445_6116528_6116765_6117600
68022	SIRV3	+	1074	8	NNC	SIRV3A	novel	1083	8	NA	NA	-1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1189.92561935267	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGGTTAACGTCTCGTAA	NA	False	NA	NA	False	NA	NA	NA	1962	8936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2006_4003_4076_4568_4780_6057_6334_7270_7363_7872_7989_8124_8208_8755
68026	chr11	-	1245	2	ISM	ENSMUSG00000020814.14	ENSMUST00000021170.9	2063	4	16082	390	16039	-390	3prime_fragment	FALSE	canonical	3	89	junction_1	0	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTTAAGGTCCGTTTTT	2377	False	NA	NA	False	NA	NA	NA	116702790	116694277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116695481_116702748
68027	chr7	-	706	6	Antisense	novelGene_ENSMUSG00000046865.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	585	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACTCCACGAGTCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	27878694	27869190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_27869242_27873926_27874066_27876582_27876700_27877628_27877741_27878320_27878467_27878553
68028	chr1	-	2310	1	Antisense	novelGene_ENSMUSG00000103139.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTGCCACCACACCT	NA	False	NA	NA	False	NA	NA	NA	167080176	167077866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_167077900_167080200
68030	chr4	+	702	6	NNC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	47	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	175.937943605125	13	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCCATGAAGCCTAGGTG	NA	False	NA	NA	False	NA	NA	NA	152262637	152356302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314276_152356171
68031	chr7	-	2021	4	FSM	ENSMUSG00000063535.8	ENSMUST00000032622.9	3028	4	17	990	-14	-990	multi-exon	FALSE	canonical	3	13	junction_1	4.32049379893857	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGACATATATTTGTTG	NA	False	NA	NA	False	NA	NA	NA	7139737	7134663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_7136168_7137165_7137250_7138290_7138418_7139431
68033	chr2	-	247	1	FSM	ENSMUSG00000035949.16	ENSMUST00000201806.2	4405	1	1874	2284	-1152	1176	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCAGGTTGATCTCTAA	NA	False	NA	NA	False	NA	NA	NA	34714345	34714098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34714100_34714300
68034	chr12	+	1021	9	NNC	ENSMUSG00000021115.16	novel	1509	13	NA	NA	10	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	478.054243130421	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGAAGGGTAATTTATAA	NA	False	NA	NA	False	NA	NA	NA	105976584	106041457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976618_106002798_106002964_106009095_106009152_106024101_106024235_106024834_106024951_106025876_106025936_106028888_106029068_106036783_106036859_106041252
68037	chr2	+	3752	2	Antisense	novelGene_ENSMUSG00000041997.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATAACTGTTTACTGACA	NA	False	NA	NA	False	NA	NA	NA	70589358	70593146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_70591271_70591306
68044	chr11	+	2028	2	NNC	ENSMUSG00000042529.15	novel	2291	2	NA	NA	-419	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	25	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGCTCTTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	60912970	60961957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60912995_60959953
68045	chr7	-	1020	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	-5	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.5	153	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	-1	True	NA	NA	False	NA	NA	NA	127021211	127018138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127018814_127020576_127020691_127020980
68046	chr7	-	1079	1	Intergenic	novelGene_2962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCAAAAATTTGTATCTG	NA	False	NA	NA	False	NA	NA	NA	44963139	44962060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_44962100_44963100
68048	chr7	-	2107	3	NIC	ENSMUSG00000043073.11	novel	1885	3	NA	NA	4538	167	intron_retention	FALSE	canonical	1	1	junction_1	3	5	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTCCTTTCCTTTT	6400	False	NA	NA	False	NA	NA	NA	104422139	104417088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_104419011_104419786_104419889_104422056
68052	chr4	+	687	2	Intergenic	novelGene_1954	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGGAACCCCGGGAACCC	NA	False	NA	NA	False	NA	NA	NA	126891847	126893212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_126892463_126893140
68053	ERCC-00113	+	825	1	FSM	ERCC-00113A	DQ883663	825	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	948	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00113_+_0_800
68055	chr8	-	1733	1	FSM	ENSMUSG00000036550.17	ENSMUST00000212340.2	2381	1	-1322	1970	-37	-1970	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAACTACAGCCTCAACT	NA	False	NA	NA	False	NA	NA	NA	96466486	96464753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96464800_96466500
68056	chr16	-	1788	2	FSM	ENSMUSG00000022639.15	ENSMUST00000186535.2	2896	2	-15	1123	-6	3	multi-exon	FALSE	canonical	3	6	junction_1	0	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATAGGAGTGTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	50553106	50547110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_50548573_50552780
68057	chr3	+	621	6	NNC	ENSMUSG00000038374.11	novel	2604	6	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1747.70764145494	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTATTACTTTACTGT	8642	False	NA	-70	True	NA	NA	NA	96537255	96539214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96537345_96537617_96537678_96537792_96537871_96538181_96538319_96538747_96538860_96539069
68058	chr17	-	878	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	2456	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	9.09670269933013	82	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	NA	False	NA	NA	NA	69584203	69579900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582902_69583120_69583191_69584054
68059	chr3	-	2274	7	ISM	ENSMUSG00000027508.16	ENSMUST00000108384.9	3729	8	81168	1011	-47460	-142	3prime_fragment	FALSE	canonical	1	2	junction_6	1.49071198499986	7	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATTATATAAATTTATAA	NA	False	NA	NA	False	NA	NA	NA	9817522	9757968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_9759190_9761178_9761239_9764284_9764872_9767017_9767115_9769763_9769816_9771142_9771350_9817472
68060	chr17	-	961	1	FSM	ENSMUSG00000117818.2	ENSMUST00000235158.2	2711	1	1310	440	1310	-440	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCCTGTTACAGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	31769921	31768960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31769000_31769900
68061	chr2	+	1407	9	FSM	ENSMUSG00000027456.9	ENSMUST00000028950.9	1399	9	-11	3	-11	-3	multi-exon	FALSE	canonical	1	3	junction_1	9.20258115965298	91	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCCCGGTCATGAAAGT	NA	False	NA	NA	False	NA	NA	NA	151414530	151431922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_151414625_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
68062	chr8	-	992	6	NNC	ENSMUSG00000031594.10	novel	1120	8	NA	NA	5758	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	3.55527776692624	83	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGCCATGGTAATTGT	NA	False	NA	NA	False	NA	NA	NA	41662432	41644470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662222
68063	chr19	+	456	2	ISM	ENSMUSG00000038812.17	ENSMUST00000172869.2	485	3	342	-194	331	0	3prime_fragment	FALSE	canonical	3	822	junction_1	0	31	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	NA	False	NA	NA	False	NA	NA	NA	6887862	6888396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6888042_6888119
68065	chr2	+	1613	3	FSM	ENSMUSG00000046854.17	ENSMUST00000124980.2	778	3	-838	3	-838	-2	multi-exon	FALSE	canonical	2	2	junction_1	1.5	6	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTACAGACCACGAAATG	NA	False	NA	NA	False	NA	NA	NA	32469100	32473781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32470066_32470290_32470442_32473284
68066	chr10	+	641	3	FSM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	11	26	11	-26	multi-exon	FALSE	canonical	3	33	junction_1	13	432	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGACCTCCCCCTTGAT	NA	False	NA	NA	False	NA	NA	NA	80008788	80010954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80009009_80010042_80010160_80010650
68067	chr19	-	1151	5	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	16	0	intron_retention	TRUE	canonical	3	188	junction_2	20.6942020865749	486	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9292	False	NA	NA	False	NA	NA	NA	6969855	6965278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6965477_6965556_6965644_6966790_6967234_6968085_6968180_6969526
68070	chr3	+	865	7	NNC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-60	-198	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	363.029115759176	1	28	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTCAGAAAAACCAAAACAAG	NA	False	NA	NA	False	NA	NA	NA	105866763	105874645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_105867015_105867268_105867455_105868932_105868944_105872396_105872469_105873080_105873190_105873672_105873742_105874478
68071	chr2	+	712	4	NNC	ENSMUSG00000027455.17	novel	1369	8	NA	NA	-5	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	662.047497456858	46	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATAGAAATTCCCACTGG	NA	False	NA	NA	False	NA	NA	NA	151336204	151353240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151336333_151338503_151338571_151351490_151351594_151352826
68072	chr11	+	2438	7	ISM	ENSMUSG00000004296.15	ENSMUST00000102796.10	1861	8	3973	-632	3973	632	3prime_fragment	FALSE	canonical	0	0	junction_1	0.372677996249965	3	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTTCTTTGCAGTCATGG	NA	False	NA	NA	False	NA	NA	NA	44294862	44305492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_44294952_44298634_44298902_44299287_44299406_44300958_44301177_44301777_44301957_44303344_44303470_44304050
68073	chr5	+	1020	1	Intergenic	novelGene_854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACCAGATCCCATTACAGA	NA	False	NA	NA	False	NA	NA	NA	125519543	125520563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_125519500_125520600
68074	chr1	-	3794	1	Intergenic	novelGene_499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGAAGGGAAACAAACATCT	NA	False	NA	NA	False	NA	NA	NA	187062715	187058921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_187058900_187062700
68076	chr3	-	1755	9	FSM	ENSMUSG00000028007.14	ENSMUST00000029639.12	2021	9	26	240	26	-16	multi-exon	FALSE	canonical	3	21	junction_1	4.05431868505671	18	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATAAGAAATGGGTGTC	NA	False	NA	NA	False	NA	NA	NA	117662559	117575535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_117576026_117594489_117594643_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
68077	chr16	-	1350	9	NNC	ENSMUSG00000033809.16	novel	1451	9	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	132.226072977307	58	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	NA	False	NA	NA	NA	20429475	20424221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20424468_20424611_20424755_20425273_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429329
68078	chr9	+	1050	7	FSM	ENSMUSG00000033543.18	ENSMUST00000133881.8	833	7	3	-220	0	-2	multi-exon	FALSE	canonical	3	20	junction_4	372.51159564353	165	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTGTGAGTAATACTTG	NA	False	NA	NA	False	NA	NA	NA	69919852	69930017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924206_69925961_69926101_69926670_69926798_69929718
68079	chr9	+	810	7	NNC	ENSMUSG00000066705.8	novel	1788	8	NA	NA	11	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	447.53919753842	1	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGACTCTGAGTGGC	636	False	NA	NA	False	NA	NA	NA	45281750	45307448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_45281787_45301285_45301346_45301931_45301971_45302074_45302150_45302858_45302902_45306813_45306972_45307049
68080	chr17	+	949	3	ISM	ENSMUSG00000001870.17	ENSMUST00000234490.2	6235	35	706	324628	-20	18914	5prime_fragment	FALSE	canonical	3	21	junction_1	1	3	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATTAGGTATTTAGC	NA	False	NA	NA	False	NA	NA	NA	75313268	75373695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_75313357_75314325_75314397_75372905
68081	chr11	-	1130	7	NNC	ENSMUSG00000018442.14	novel	884	8	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	211.187449648148	749	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTATTTAAGCTTTCGT	NA	False	NA	NA	False	NA	NA	NA	70910068	70900757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905447_70906514_70906627_70909137_70909204_70909969
68082	chr5	-	1251	5	FSM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	-26	5	-26	3	multi-exon	FALSE	canonical	3	19	junction_3	6.38357266740185	84	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAGTTTGTATCACAACT	NA	False	NA	NA	False	NA	NA	NA	5799352	5786321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5786674_5789795_5789961_5790349_5790863_5792825_5792941_5799246
68083	chr17	-	1573	3	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	4	2444	intron_retention	FALSE	canonical	3	37	junction_1	10	3	40	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATCAAAAACATCCCACAG	NA	False	NA	NA	False	NA	NA	NA	69584199	69579912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_69580313_69582162_69583191_69584054
68084	chr17	+	1277	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	69	-4	3	0	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	NA	False	NA	NA	NA	35278079	35281071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
68085	chr6	+	3222	1	Antisense	novelGene_ENSMUSG00000030257.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTTTTTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	112731916	112735138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_112731900_112735100
68086	chr8	+	2350	1	Genic_Genomic	ENSMUSG00000097174.3	novel	NA	NA	NA	NA	-92	-8415	mono-exon	FALSE	NA	NA	NA	NA	NA	14	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGAGAAGCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	80021659	80024009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_80021700_80024000
68088	chr2	-	324	4	NNC	ENSMUSG00000027108.16	novel	905	8	NA	NA	-23	-4378	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	192.348641794009	1	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATGGTAAGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	73044700	72972248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72972257_73033668_73033813_73043203_73043305_73044629
68090	chr2	-	870	3	FSM	ENSMUSG00000074529.11	ENSMUST00000108934.9	561	3	-27	-282	-18	282	multi-exon	FALSE	canonical	3	10	junction_1	2	179	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAACTGTTATAAATCTGA	NA	False	NA	NA	False	NA	NA	NA	177567424	177544850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177545521_177563481_177563609_177567351
68092	chr17	+	712	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	112	6	0	0	multi-exon	FALSE	canonical	3	5482	junction_4	1458.64553610533	3	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	28547556	28550001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
68093	chr9	+	1850	7	NIC	ENSMUSG00000036411.11	novel	2223	7	NA	NA	-35	1	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.8151743807532	17	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGAAAACTTTTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	22322773	22355968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_22323046_22335807_22336104_22341651_22341796_22342971_22343105_22346390_22346697_22351162_22351261_22355367
68094	chr11	-	635	1	FSM	ENSMUSG00000078154.4	ENSMUST00000104959.2	1310	1	670	5	670	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	293	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAGAGTGTAAGAA	NA	False	NA	NA	False	NA	NA	NA	48716812	48716177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_48716200_48716800
68095	chr11	-	1840	1	Genic_Genomic	ENSMUSG00000042549.11	novel	NA	NA	NA	NA	-33	-9144	mono-exon	FALSE	NA	NA	NA	NA	NA	20	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGAAAGCCCCCAAACCAAT	NA	False	NA	NA	False	NA	NA	NA	60822726	60820886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_60820900_60822700
68096	chr9	-	933	6	FSM	ENSMUSG00000032239.11	ENSMUST00000034763.10	1134	6	201	0	23	0	multi-exon	FALSE	canonical	3	365	junction_2	10.1311401135312	144	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGTCATTATTAATACAG	9711	False	NA	NA	False	NA	NA	NA	22379443	22359606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
68097	chr1	+	679	4	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-5	16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1440.36507717854	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGCTTGAAAGATAACC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217117_63218406_63218533_63218616
68098	chr11	-	1394	7	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	8	75161	8	-27898	5prime_fragment	FALSE	canonical	3	22	junction_2	1.37436854187255	59	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATGCTTACTTGTGAT	1479	False	NA	NA	False	NA	NA	NA	120823690	120792515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
68099	chr3	-	682	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20571	-3	intron_retention	TRUE	non_canonical	0	0	junction_1	0	16	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAACTTCCGTCCCAGG	NA	False	NA	NA	False	NA	NA	NA	103126862	103105544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103105611_103105727_103106273_103126791
68100	chr8	+	525	1	NIC	ENSMUSG00000033938.6	novel	623	3	NA	NA	4323	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGGGTCACCTGCCTAA	NA	False	NA	NA	False	NA	NA	NA	84297709	84298234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_84297700_84298200
68101	chr1	-	563	1	Antisense	novelGene_ENSMUSG00000103292.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTCTTCACAAGAAAGAC	NA	False	NA	NA	False	NA	NA	NA	90448241	90447678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_90447700_90448200
68103	chr7	+	1725	2	NNC	ENSMUSG00000030657.12	novel	9020	12	NA	NA	194534	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGGTTACTTTTTAGC	NA	False	NA	NA	False	NA	NA	NA	117269260	117272808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_117269380_117271202
68104	chr7	-	735	3	Antisense	novelGene_ENSMUSG00000030413.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1094	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGAGGAAGGGCTTGCTT	NA	False	NA	NA	False	NA	NA	NA	18624365	18618562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_18618897_18623200_18623324_18624087
68105	chr10	-	1935	2	FSM	ENSMUSG00000047492.6	ENSMUST00000059718.6	5319	2	2591	793	2591	-793	multi-exon	FALSE	canonical	3	17	junction_1	0	25	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACCAGAGAATTGTGTAA	8037	False	NA	NA	False	NA	NA	NA	127187689	127185518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127186881_127187116
68106	chr8	+	990	3	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	43	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12	133	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCATTTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	3618040	3628583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3618187_3623120_3623222_3627840
68109	chr10	+	1737	3	FSM	ENSMUSG00000046463.6	ENSMUST00000217338.2	337	3	-13	-1387	-13	668	multi-exon	FALSE	canonical	3	7	junction_1	7.5	66	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTATAATAATTACAATC	NA	False	NA	NA	False	NA	NA	NA	37017071	37027979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_37017182_37024872_37025003_37026482
68110	chr10	-	1963	6	ISM	ENSMUSG00000036955.17	ENSMUST00000065887.14	2472	7	3317	7	3254	-3	3prime_fragment	FALSE	canonical	3	136	junction_2	17.5088549025914	57	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTAATTACTTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	62410919	62394255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62395663_62399014_62399131_62401815_62401901_62405237_62405422_62406177_62406258_62410828
68111	chr1	+	2134	7	NIC	ENSMUSG00000026170.7	novel	1892	9	NA	NA	-11	-18	intron_retention	FALSE	canonical	1	2	junction_5	2.16024689946929	11	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATTTAAAATTCAAGT	NA	False	NA	NA	False	NA	NA	NA	74752721	74777033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74753051_74771077_74771269_74774435_74774636_74774712_74774911_74775022_74775196_74775839_74776551_74776701
68112	chr3	+	742	5	NNC	ENSMUSG00000027952.17	novel	1194	5	NA	NA	84	25887	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	236.773098134057	1	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATCCACCTCTCCAAGGC	224	False	NA	NA	False	NA	NA	NA	89366508	89402207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89402075
68113	chr3	+	551	1	Intergenic	novelGene_3151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCTGTGGCTGTGTTGTC	6573	False	NA	NA	False	NA	NA	NA	89402288	89402839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_89402300_89402800
68115	chr9	-	795	6	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	19	-3059	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	572.177594807766	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGAAATGGAGACTCTGAT	NA	False	NA	NA	False	NA	NA	NA	70328810	70318032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_70318174_70320123_70320252_70320383_70320555_70326075_70326190_70326282_70326412_70328698
68116	chr2	+	931	5	NIC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	-15	-124	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	539.338657524194	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGTTGACTATGAATGT	NA	False	NA	NA	False	NA	NA	NA	145745198	145758221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_145745283_145753616_145753684_145754312_145754449_145757453_145757600_145757723
68119	chr5	+	1126	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	68	5279	68	365	multi-exon	FALSE	canonical	3	373	junction_1	23.5	384	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCAGAGCTTTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	125518699	125532155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_125518957_125528733_125528837_125531389
68120	chr17	+	1515	6	NIC	ENSMUSG00000040482.17	novel	1447	7	NA	NA	16	-5	intron_retention	FALSE	canonical	3	133	junction_1	20.3115730557729	224	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGTCTCTTGCTGTGTCT	2992	False	NA	NA	False	NA	NA	NA	35056010	35058157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35056193_35056368_35056731_35056876_35057422_35057523_35057660_35057788_35057884_35057962
68121	chr3	-	1041	1	Antisense	novelGene_ENSMUSG00000041355.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGAGCCAATCTGGAAAA	8382	False	NA	NA	False	NA	NA	NA	88495224	88494183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88494200_88495200
68122	chrX	+	1801	9	ISM	ENSMUSG00000025261.19	ENSMUST00000112622.8	14168	81	93084	547	4074	-547	3prime_fragment	FALSE	canonical	3	472	junction_2	67.2123500556259	4	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGCACTCTTCATAACT	NA	False	NA	NA	False	NA	NA	NA	150711327	150717866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
68127	chr8	+	1308	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	6051	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	77.3801492632316	33	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	773	False	NA	NA	False	NA	NA	NA	70611481	70620138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
68129	chr8	+	867	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	20	6	12	-6	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	291	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAACTATTGTTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	72044839	72048907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
68130	chr12	+	1002	10	Antisense	novelGene_ENSMUSG00000005656.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	434	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCAGGGCTCGCGCAGTC	NA	False	NA	NA	False	NA	NA	NA	54803665	54842448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_54803859_54807181_54807258_54810402_54810510_54812367_54812465_54814801_54814928_54817503_54817626_54830187_54830301_54830801_54830905_54842238_54842289_54842433
68131	chr8	-	1373	3	Intergenic	novelGene_1702	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	120	junction_1	12	100	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTTTTTGTCATGTTGT	NA	False	NA	NA	False	NA	NA	NA	89779665	89774455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89775532_89776215_89776356_89779508
68132	chr19	-	967	5	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	30	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1715.65461267704	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGTGGTTATATGTTGCT	3793	False	NA	NA	False	NA	NA	NA	7017305	6998087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998403_7009847_7010056_7011980_7012157_7012863_7013074_7017247
68133	chr17	+	1954	1	NIC	ENSMUSG00000024158.18	novel	1191	9	NA	NA	-10	-1615	mono-exon	FALSE	NA	NA	NA	NA	NA	21	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGTACCCCCCCAAAAA	NA	False	NA	NA	False	NA	NA	NA	25069539	25071493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25069500_25071500
68134	chr4	-	967	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	10	2164	10	259	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	2	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATCTTTACATTTGTTAC	NA	False	NA	NA	False	NA	NA	NA	108690801	108673655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
68135	chr12	+	1866	1	NIC	ENSMUSG00000005078.17	novel	721	5	NA	NA	-482	-3468	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGGCCCAGCGGCCCTGC	NA	False	NA	NA	False	NA	NA	NA	72135455	72137321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_72135500_72137300
68136	chr10	-	1944	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	10	-647	10	647	multi-exon	FALSE	canonical	3	22	junction_4	35.9400542570542	77	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATTTTATACAGAACATC	7255	False	NA	NA	False	NA	NA	NA	128204550	128198321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204387
68137	chr6	-	1199	11	FSM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	17	0	-1	0	multi-exon	FALSE	canonical	1	8	junction_10	9.65453261426984	142	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9899	False	NA	NA	False	NA	NA	NA	83133362	83129690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
68138	chr8	+	1462	1	NIC	ENSMUSG00000031728.11	novel	2033	8	NA	NA	7682	-974	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAGGAGGTGGTAAGGC	4300	False	NA	NA	False	NA	NA	NA	110448785	110450247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_110448800_110450200
68139	chr4	-	951	7	NNC	ENSMUSG00000028455.16	novel	861	8	NA	NA	-11	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1534.99114184921	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCAGTGGCAAATGGGAA	9789	False	NA	NA	False	NA	NA	NA	43030510	43028039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030057_43030177_43030421
68140	chr4	+	2111	2	Antisense	novelGene_ENSMUSG00000062518.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	100	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAATGGTGGAACTTCC	NA	False	NA	NA	False	NA	NA	NA	147775664	147787056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147777618_147786898
68141	chr4	+	633	1	NIC	ENSMUSG00000028211.12	novel	5404	4	NA	NA	36	-9288	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTTTTGAGCTTGGGTCT	4	True	NA	NA	False	NA	NA	NA	11156479	11157112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_11156500_11157100
68143	chr1	+	2004	8	Antisense	novelGene_ENSMUSG00000062729.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCCGCCCCTAACTTTTA	NA	False	NA	NA	False	NA	NA	NA	171105031	171108709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_171105168_171105322_171105376_171105453_171105574_171105707_171105773_171106703_171106888_171107002_171108101_171108252_171108336_171108444
68145	chr2	+	930	2	FSM	ENSMUSG00000042745.10	ENSMUST00000038368.9	934	2	4	0	4	0	multi-exon	FALSE	canonical	3	30	junction_1	0	461	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	4426	False	NA	NA	False	NA	NA	NA	152578174	152579330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152578666_152578891
68146	chr5	+	849	2	FSM	ENSMUSG00000060152.15	ENSMUST00000142233.2	529	2	-15	-305	0	6	multi-exon	FALSE	canonical	3	53	junction_1	0	137	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCACTTGCCTTGAATGT	NA	False	NA	NA	False	NA	NA	NA	115376090	115379031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115376129_115378220
68147	chr4	+	724	6	NNC	ENSMUSG00000028797.21	novel	1437	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	271.450621660736	49	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCAAATGTTTTATTT	3197	False	NA	NA	False	NA	NA	NA	129494493	129502321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501248_129501308_129501999
68148	chr9	+	838	6	NNC	ENSMUSG00000032348.7	novel	977	7	NA	NA	6321	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1296.05493710722	3	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTCTCGTTGGAGAGGTG	NA	False	NA	NA	False	NA	NA	NA	78105549	78116628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_78105659_78106771_78106824_78111513_78111655_78113221_78113336_78115082_78115215_78116338
68150	chr3	+	861	4	NNC	ENSMUSG00000039887.12	novel	2037	4	NA	NA	-40	304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.1072795307661	26	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACACTACTCACAGGTTC	NA	False	NA	NA	False	NA	NA	NA	121085381	121155660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121085500_121092252_121092408_121113728_121113861_121155204
68152	chr7	-	756	1	FSM	ENSMUSG00000062758.7	ENSMUST00000085365.6	801	1	81	-36	81	36	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTAAAAAAAAAATCGC	NA	False	NA	NA	False	NA	NA	NA	131216636	131215880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_131215900_131216600
68153	chr8	-	1010	5	NNC	ENSMUSG00000035559.10	novel	980	5	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_3	276.99311814556	357	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	NA	False	NA	NA	NA	71213581	71211294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71211671_71211754_71211884_71212036_71212155_71213013_71213185_71213365
68154	chr9	-	951	1	ISM	ENSMUSG00000043154.16	ENSMUST00000075941.12	6786	14	144212	1549	17542	1250	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATCAAACCTTGGGAGA	3208	False	NA	NA	False	NA	NA	NA	100984782	100983831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_100983800_100984800
68156	chr6	+	1183	4	NNC	ENSMUSG00000042097.18	novel	3158	3	NA	NA	20	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7.25718035235908	65	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTCCAATGTGTTCATTTG	NA	False	NA	NA	False	NA	NA	NA	117840064	117849727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117840104_117846178_117846235_117847216_117847578_117849000
68157	chr12	-	1780	1	Intergenic	novelGene_4415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGAACCATTTCTAAACA	NA	False	NA	NA	False	NA	NA	NA	79382472	79380692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_79380700_79382500
68158	chr15	+	922	5	FSM	ENSMUSG00000039676.5	ENSMUST00000042360.5	949	5	22	5	22	-5	multi-exon	FALSE	canonical	3	64	junction_4	9.67923034130297	227	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGAGCTTGCCTCCTTTG	19	False	NA	NA	False	NA	NA	NA	9436135	9466119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9462676_9462887_9465840
68159	chr2	-	1701	14	NNC	ENSMUSG00000089917.8	novel	1782	14	NA	NA	48	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	42.2748123983254	1	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATGTTACCGAAATAAA	4631	False	NA	NA	False	NA	NA	NA	181223717	181211014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211688_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214853_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
68160	chr5	+	609	4	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1165	-5	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	916.615634943143	8	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTGGTGATTGTT	NA	False	NA	NA	False	NA	NA	NA	115603155	115612776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115603279_115604230_115604380_115610051_115610180_115612567
68161	chr1	+	2121	1	NIC	ENSMUSG00000026604.18	novel	10746	19	NA	NA	4809	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGAATATTGTTGGATT	NA	False	NA	NA	False	NA	NA	NA	189582048	189584169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_189582000_189584200
68162	chr12	+	2454	1	Intergenic	novelGene_4410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTATTTATTTATTAT	NA	False	NA	NA	False	NA	NA	NA	76812446	76814900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_76812400_76814900
68164	chr11	+	171	2	Intergenic	novelGene_2471	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	20	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	97080698	97081624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_97080795_97081549
68165	chr19	+	1425	5	NNC	ENSMUSG00000047731.18	novel	3911	5	NA	NA	-9	1101	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	63.0257883726971	16	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGCTCTAAGCGAGGTG	NA	False	NA	NA	False	NA	NA	NA	46587513	46642062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46587733_46595150_46595199_46632791_46632895_46640912_46641211_46641305
68166	chr14	+	833	2	NNC	ENSMUSG00000022010.20	novel	801	2	NA	NA	-10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATACACACGTGTTTCT	6529	False	NA	NA	False	NA	NA	NA	76741907	76745196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76742150_76744605
68167	chr12	+	1604	15	ISM	ENSMUSG00000054003.14	ENSMUST00000079009.11	4809	36	13440	43237	-8759	-42	internal_fragment	FALSE	canonical	1	1	junction_3	3.22062866217014	1	35	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAACTCGTTGTGCTGGGA	6792	False	NA	NA	False	NA	NA	NA	111951432	111992051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_111951540_111958895_111958994_111960141_111960364_111960877_111961001_111963220_111963302_111964231_111964397_111968157_111968259_111973945_111974011_111979699_111979755_111979915_111980001_111980875_111980934_111982291_111982397_111989675_111989774_111991095_111991228_111991942
68168	chr13	+	1082	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	-4	-7	-4	7	multi-exon	FALSE	canonical	3	52	junction_3	4.02768199119819	49	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATGCCTTTTTATTGAG	NA	False	NA	NA	False	NA	NA	NA	52000709	52002511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
68169	chr18	+	1527	2	FSM	ENSMUSG00000024603.9	ENSMUST00000223590.2	1530	2	-8	11	5	-11	multi-exon	FALSE	canonical	3	13	junction_1	0	59	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGAAATACTTTCTTAC	NA	False	NA	NA	False	NA	NA	NA	60659277	60661039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60659438_60659672
68170	chr12	+	1224	2	Intergenic	novelGene_4434	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTCACAAGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	86530785	86532049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_86531571_86531610
68171	chr8	+	1647	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	-1	-4	-1	4	multi-exon	FALSE	canonical	3	205	junction_10	22.2279853638006	593	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGTTTGGCAATCCTTTA	2124	False	NA	NA	False	NA	NA	NA	123951579	123958993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
68172	chr1	+	545	2	Genic_Genomic	ENSMUSG00000081051.5	novel	531	1	NA	NA	-35	47	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAAGGATG	NA	False	NA	NA	False	NA	NA	NA	95426310	95426923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_95426730_95426797
68173	chr2	+	1479	1	FSM	ENSMUSG00000070461.4	ENSMUST00000189441.2	3352	1	1873	0	1565	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGACTGGTCTGGATCT	NA	False	NA	NA	False	NA	NA	NA	180627589	180629068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180627600_180629100
68174	chr13	-	836	4	Genic_Genomic	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-11631	2559	multi-exon	FALSE	canonical	0	0	junction_1	84.3893094861876	86	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACGGTTTCTCTCC	4338	False	NA	NA	False	NA	NA	NA	66901008	66883875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66884223_66888748_66889043_66889243_66889330_66900899
68177	chr8	+	1111	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	42	2	7	-2	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	588	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACAGGAGTCCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	126460983	126474972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
68178	chr7	+	668	5	NNC	ENSMUSG00000030663.13	novel	1479	5	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	758.133357332336	192	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115692548	115704445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702502_115704190
68179	chr12	+	1641	4	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-5155	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	28.3313724811677	91	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	108981572	108994378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_108981695_108990888_108991060_108992335_108992477_108993171
68180	chr13	+	2146	3	FSM	ENSMUSG00000049115.16	ENSMUST00000066412.8	2199	3	40	13	37	-13	multi-exon	FALSE	canonical	0	0	junction_1	0	5	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTAACGTATCTGATC	NA	False	NA	NA	False	NA	NA	NA	30520463	30566837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_30520573_30528919_30529004_30564884
68182	chr13	+	1496	1	Intergenic	novelGene_1331	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTCTTGAGAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	25008030	25009526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_25008000_25009500
68184	chr17	+	1090	3	FSM	ENSMUSG00000002379.8	ENSMUST00000233233.2	918	3	-31	-141	0	2	multi-exon	FALSE	canonical	3	2627	junction_1	33.5	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTCTTAAAGGCAGGCT	NA	False	NA	NA	False	NA	NA	NA	57024766	57029139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57024943_57028034_57028128_57028318
68185	chr5	-	1186	6	NNC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	-8	257	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	751.358130321353	1	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTCTTTCCAGTGATGG	NA	False	NA	NA	False	NA	NA	NA	30278623	30265804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30266176_30268210_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
68187	chr5	-	672	2	FSM	ENSMUSG00000045438.13	ENSMUST00000152715.2	748	2	-8	84	-3	-84	multi-exon	FALSE	canonical	3	183	junction_1	0	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCATGGCCTCGCGCTG	NA	False	NA	NA	False	NA	NA	NA	139330923	139327854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_139328430_139330826
68189	chr17	-	377	2	FSM	ENSMUSG00000049760.7	ENSMUST00000233386.2	303	2	-20	-54	-20	54	multi-exon	FALSE	canonical	3	1891	junction_1	0	95	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTTTCTTCCCAGCTC	NA	False	NA	NA	False	NA	NA	NA	56916702	56915709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56916024_56916639
68190	chr11	-	1079	2	NIC	ENSMUSG00000020831.19	novel	778	5	NA	NA	75	0	intron_retention	FALSE	canonical	3	142	junction_1	0	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	NA	False	NA	NA	NA	70128429	70126031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70127038_70128356
68191	chr16	+	2023	5	ISM	ENSMUSG00000022957.21	ENSMUST00000126374.3	793	7	7299	-1319	-916	0	3prime_fragment	FALSE	canonical	3	118	junction_2	8.03118920210451	46	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATGGAAACGTCTCTGTG	3349	False	NA	NA	False	NA	NA	NA	91657997	91668541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_91658128_91660144_91660267_91664907_91665026_91666505_91666698_91667080
68193	chr11	-	1400	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	168	8	168	-8	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	46	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAAAAGGATACCTTGCT	9767	False	NA	NA	False	NA	NA	NA	100036778	100031643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
68194	chr4	-	1345	1	Genic_Genomic	ENSMUSG00000028492.14	novel	NA	NA	NA	NA	93335	203	mono-exon	FALSE	NA	NA	NA	NA	NA	18	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTGGGGCATTGAATT	NA	False	NA	NA	False	NA	NA	NA	86364019	86362674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_86362700_86364000
68195	chr19	+	954	7	Antisense	novelGene_ENSMUSG00000041360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	70	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTCCCGGATGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	27367470	27394205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_27367720_27373641_27373780_27376279_27376507_27377082_27377221_27389580_27389662_27393284_27393337_27394136
68197	chr2	-	627	1	NIC	ENSMUSG00000093752.2	novel	5288	12	NA	NA	18288	-30464	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAAAATGTGTCTCCAA	NA	False	NA	NA	False	NA	NA	NA	168053996	168053369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_168053400_168054000
68198	chr9	-	1224	3	ISM	ENSMUSG00000037190.13	ENSMUST00000194967.2	658	4	286	-468	24	1	3prime_fragment	FALSE	canonical	3	15	junction_2	49.5	32	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCGGGAGGAGCAGCGCA	NA	False	NA	NA	False	NA	NA	NA	107419040	107416772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107417585_107418201_107418269_107418695
68199	chrX	+	1837	6	NNC	ENSMUSG00000025332.15	novel	1872	7	NA	NA	-11	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	212.592191766302	9	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGCGCTCCTTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	151016238	151057524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025063_151056557
68201	chr7	-	1231	2	Intergenic	novelGene_2990	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	87	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACAGTATCTGCATTAAT	NA	False	NA	NA	False	NA	NA	NA	81814512	81761690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_81762785_81814375
68202	chr3	+	992	7	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1729.15682728124	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3557	False	NA	NA	False	NA	NA	NA	88486914	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495489_88495552
68203	chr7	-	1673	5	ISM	ENSMUSG00000003752.10	ENSMUST00000003850.8	3247	7	11654	2	-2520	-2	3prime_fragment	FALSE	canonical	3	37	junction_2	3.64005494464026	42	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTGTGGGTATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	26916399	26906598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_26907870_26911736_26911809_26912384_26912487_26913800_26914006_26916376
68204	chr5	-	809	7	Antisense	novelGene_ENSMUSG00000077426.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTTCACAAACCCCTT	9621	False	NA	NA	False	NA	NA	NA	108055908	108049752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_108049799_108049897_108049981_108051157_108051283_108051563_108051728_108052577_108052760_108055053_108055117_108055762
68205	chr2	-	1954	6	NIC	ENSMUSG00000037773.15	novel	1689	8	NA	NA	-61	3	intron_retention	FALSE	canonical	0	0	junction_5	14.3861044066836	9	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGACATTCCTGTGTCGG	7573	False	NA	NA	False	NA	NA	NA	130266682	130260886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264813_130265331_130265473_130266412
68206	chr2	+	1454	2	FSM	ENSMUSG00000087377.2	ENSMUST00000124336.2	921	2	17	-550	17	550	multi-exon	FALSE	canonical	3	32	junction_1	0	131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAATGCAAAGACCAGA	562	False	NA	NA	False	NA	NA	NA	132095293	132103803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_132095450_132102505
68208	chr11	+	1983	3	FSM	ENSMUSG00000050860.7	ENSMUST00000150134.2	590	3	43	-1436	42	-3	multi-exon	FALSE	canonical	3	31	junction_2	1.5	20	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAAAGGGACTTGTTCTC	2240	False	NA	NA	False	NA	NA	NA	95715367	95722963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95715536_95719491_95719602_95721258
68209	chr4	+	856	7	NIC	ENSMUSG00000028745.19	novel	1674	9	NA	NA	5540	-174	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	611.497456158968	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTCCAAGGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	138966233	139018577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_138966310_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
68213	chr6	-	745	4	NIC	ENSMUSG00000002797.10	novel	686	4	NA	NA	14	-15	combination_of_known_junctions	FALSE	canonical	1	2	junction_3	67.0538755197805	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGTGCAAGTGGTGATG	2957	False	NA	NA	False	NA	NA	NA	54969678	54962647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_54962987_54963817_54963954_54966396_54966543_54969554
68214	chr12	-	1081	3	FSM	ENSMUSG00000112880.2	ENSMUST00000219062.2	1118	3	44	-7	44	7	multi-exon	FALSE	canonical	2	4	junction_2	3	23	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTAACCAAAACCAACCTG	NA	False	NA	NA	False	NA	NA	NA	80992126	80989439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80989717_80989815_80990004_80991510
68215	chr5	+	896	1	ISM	ENSMUSG00000029231.16	ENSMUST00000000476.15	6549	23	42647	2367	33119	-2353	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAGGTGACAAGTTTGG	NA	False	NA	NA	False	NA	NA	NA	75355613	75356509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75355600_75356500
68218	chr8	+	1004	9	NNC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	20	31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	881.854721595343	1	59	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCCCTACTGTAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	95584165	95590400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589444_95589513_95590090
68222	chr3	-	823	3	NNC	ENSMUSG00000054426.12	novel	739	3	NA	NA	-2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	24.5	347	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTGGCTATGGTGATT	906	False	NA	NA	False	NA	NA	NA	115681781	115675226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_115675488_115679862_115680068_115681424
68223	chrX	+	906	1	NIC	ENSMUSG00000000838.18	novel	4409	17	NA	NA	-431	-998	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTTCCTGCGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	67755025	67755931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_67755000_67755900
68224	chr2	-	1380	11	NNC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	317	-503	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	248.563150929497	1	70	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCGACGATGGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	152173987	152158756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152158835_152160231_152160376_152161089_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166452_152166561_152168135_152168335_152169166_152169261_152172879_152173022_152173953
68225	chr2	-	1553	5	Antisense	novelGene_ENSMUSG00000027575.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCAGCTTCCGGCTACG	6759	False	NA	NA	False	NA	NA	NA	180615040	180609050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180609125_180609327_180609603_180612838_180612908_180613366_180613957_180614495
68226	chr8	+	1134	6	Intergenic	novelGene_1678	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_5	5.19230199429887	39	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTACAACTCAATTTGC	1282	False	NA	NA	False	NA	NA	NA	81668471	81696387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_81668523_81668661_81668823_81677185_81677329_81693166_81693385_81694247_81694544_81696122
68229	chr2	-	709	2	FSM	ENSMUSG00000087547.2	ENSMUST00000131365.2	629	2	0	-80	0	80	multi-exon	FALSE	canonical	3	113	junction_1	0	913	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCCTGTGGTGGGAAGAA	8707	False	NA	NA	False	NA	NA	NA	157439240	157437422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_157437906_157439014
68230	chr3	+	730	2	FSM	ENSMUSG00000048458.9	ENSMUST00000066610.8	4701	2	45	3926	45	-1240	multi-exon	FALSE	canonical	1	1	junction_1	0	4	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGTCGTAAGTTTGCCC	NA	False	NA	NA	False	NA	NA	NA	105611959	105624232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_105612142_105623684
68231	chr2	+	1053	4	NNC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	107.951635261146	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	79	False	NA	NA	False	NA	NA	NA	13579120	13587637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_13579806_13580358_13580413_13583223_13583269_13587368
68232	chr11	+	707	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	399	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGAGTCTCTTCTTATTT	NA	False	NA	NA	False	NA	NA	NA	3464866	3467351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
68233	chr4	-	924	6	ISM	ENSMUSG00000028649.22	ENSMUST00000147228.8	6281	35	27667	36292	-64	19165	internal_fragment	FALSE	canonical	2	9	junction_1	9.79795897113271	1	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTACCATGTCTATGAT	5248	False	NA	NA	False	NA	NA	NA	123393774	123386433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_123386613_123386878_123387049_123387727_123387912_123388676_123388804_123391520_123391676_123393665
68234	chr17	-	801	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	-15	-1	-4	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	4148	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9383	False	NA	NA	False	NA	NA	NA	27158412	27156945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
68235	chr3	-	1292	2	Intergenic	novelGene_3080	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	14	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTCTCTTGATTGATA	NA	False	NA	NA	False	NA	NA	NA	9714567	9710528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_9711757_9714503
68237	chr7	+	2411	16	ISM	ENSMUSG00000035390.17	ENSMUST00000048248.9	2996	19	3249	613	1934	-597	3prime_fragment	TRUE	canonical	2	3	junction_7	3.93615717843347	13	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCCCCACCAGGCCGCT	6406	False	NA	NA	False	NA	NA	NA	4697175	4718383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4697814_4701698_4701816_4701917_4701952_4702036_4702106_4707126_4707274_4707682_4707715_4708066_4708238_4709018_4709117_4709333_4709494_4709660_4709722_4710114_4710485_4710896_4710946_4711047_4711172_4711816_4712016_4713420_4713511_4718331
68239	chr4	+	1856	11	Antisense	novelGene_ENSMUSG00000038816.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCTCGCCGCACCGAGG	NA	False	NA	NA	False	NA	NA	NA	56826077	56865184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835377_56837729_56837903_56838965_56839055_56841559_56841681_56844446_56844633_56847805_56848000_56864976
68240	chr9	+	836	4	NNC	ENSMUSG00000040204.7	novel	2188	4	NA	NA	169	-1197	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	391.706522794809	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTGACTTAGT	NA	False	NA	NA	False	NA	NA	NA	65797812	65809351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65797896_65798013_65798092_65800653_65800817_65808839
68241	chrX	+	1458	1	Intergenic	novelGene_3929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTTTGTAGCTTTGGTC	NA	False	NA	NA	False	NA	NA	NA	50202533	50203991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_50202500_50204000
68242	chrX	+	951	1	Intergenic	novelGene_3930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATGGG	NA	False	NA	NA	False	NA	NA	NA	50204043	50204994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_50204000_50205000
68243	chr14	-	597	3	NNC	ENSMUSG00000085984.8	novel	764	3	NA	NA	-28	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6	71	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAAGGCCTTACTATG	NA	False	NA	NA	False	NA	NA	NA	66534360	66532778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_66533036_66533403_66533594_66534210
68246	chr7	+	2381	1	ISM	ENSMUSG00000008461.7	ENSMUST00000008605.6	2580	2	1072	1	1048	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATACTTGTATCTGATGTT	NA	False	NA	NA	False	NA	NA	NA	45268101	45270482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45268100_45270500
68247	chr1	+	1824	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188346.7	1823	10	-3	2	1	0	multi-exon	FALSE	canonical	1	4	junction_1	13.4669233565562	59	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2238	False	NA	NA	False	NA	NA	NA	75213109	75222334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75213182_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
68248	chr9	-	1755	7	ISM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	701	60	-22	-60	3prime_fragment	TRUE	canonical	1	3	junction_6	3.89087250997625	23	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCATGCACTTTGCTGTA	NA	False	NA	NA	False	NA	NA	NA	59856699	59850113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207_59856312_59856464
68249	chr3	-	940	1	FSM	ENSMUSG00000074479.4	ENSMUST00000098952.4	730	1	-51	-159	-51	159	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGTAAAAGGCTAAAAAA	8776	False	NA	NA	False	NA	NA	NA	88484497	88483557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88483600_88484500
68250	chr8	+	2691	1	NIC	ENSMUSG00000031731.17	novel	6899	24	NA	NA	-11483	-15305	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAAGCCTCAGCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	110558266	110560957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_110558300_110561000
68252	chr19	+	1977	1	FSM	ENSMUSG00000117698.2	ENSMUST00000236819.2	1999	1	12	10	12	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	35	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACAATAAGTCTGATGTC	NA	False	NA	NA	False	NA	NA	NA	43663628	43665605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_43663600_43665600
68253	chr7	+	816	8	Antisense	novelGene_ENSMUSG00000040331.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	87	8	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGGTTTACACCCATATG	NA	False	NA	NA	False	NA	NA	NA	130134272	130141669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_130134425_130135288_130135396_130135498_130135594_130137255_130137302_130138711_130138810_130139891_130139983_130140740_130140844_130141545
68255	chr1	+	2105	3	NNC	ENSMUSG00000026604.18	novel	3810	2	NA	NA	-361	1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	10	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATTGTTGGATTGTAGT	NA	False	NA	NA	False	NA	NA	NA	189576878	189584174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_189576951_189578530_189578610_189582220
68256	chr12	-	814	6	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	7	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4057.93944755217	5	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTCATGGATTGTCTTGA	NA	False	NA	NA	False	NA	NA	NA	65120729	65109225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65109515_65110451_65110550_65112510_65112579_65115767_65115884_65116724_65116827_65120588
68258	chr6	-	743	3	FSM	ENSMUSG00000050732.10	ENSMUST00000059983.10	820	3	72	5	72	0	multi-exon	FALSE	canonical	3	289	junction_1	0.5	1159	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTACGAGGCGCTTTACTC	8165	False	NA	NA	False	NA	NA	NA	72367614	72362210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72362637_72365244_72365404_72367456
68259	chr5	-	1882	5	Antisense	novelGene_ENSMUSG00000086916.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCTCGGTGTCGCTGAC	NA	False	NA	NA	False	NA	NA	NA	129823779	129802184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129802285_129816534_129816676_129816781_129816827_129821767_129821861_129822276
68260	chr3	-	1308	6	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	330.037331221788	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAACAAAAAAATTTAT	NA	False	NA	NA	False	NA	NA	NA	90398301	90395684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90395982_90396037_90396455_90396635_90396901_90397460_90397580_90397854_90397902_90398138
68262	chr4	-	2945	16	FSM	ENSMUSG00000025328.10	ENSMUST00000026377.9	3072	16	109	18	109	-14	multi-exon	FALSE	canonical	2	14	junction_8	5.0710507348631	23	45	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAACAGAAGCACAAAAGC	NA	False	NA	NA	False	NA	NA	NA	140537850	140512693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_140513946_140516147_140516274_140517023_140517104_140518473_140518577_140518668_140518814_140520288_140520441_140521147_140521256_140522923_140523036_140523123_140523228_140523647_140523827_140525359_140525486_140526215_140526334_140527391_140527454_140528855_140528929_140530777_140530959_140537826
68263	chr1	+	995	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	67	0	multi-exon	FALSE	canonical	3	144	junction_1	0	1	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTACCAAATGAGCA	4228	False	NA	NA	False	NA	NA	NA	135159799	135160963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_135160090_135160258
68264	chrX	+	1182	2	FSM	ENSMUSG00000049536.6	ENSMUST00000055104.6	2803	2	16	1605	16	-1605	multi-exon	FALSE	canonical	3	18	junction_1	0	68	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATGTTTCTTCTGAATC	NA	False	NA	NA	False	NA	NA	NA	135608746	135610622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_135608838_135609531
68265	chr15	+	1461	1	ISM	ENSMUSG00000049687.6	ENSMUST00000161178.2	2931	2	3401	24	3080	9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	82228459	82229920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_82228500_82229900
68266	chr12	-	1413	5	NIC	ENSMUSG00000019718.9	novel	1831	5	NA	NA	46	-69	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	7.17635004720366	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTATCATGCTCATAGAG	NA	False	NA	NA	False	NA	NA	NA	72131746	72120270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_72120811_72123917_72124056_72124137_72124261_72126260_72126431_72131304
68267	chr10	-	1304	1	Intergenic	novelGene_3557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACGCCCAGCTCGCAGCA	NA	False	NA	NA	False	NA	NA	NA	121892245	121890941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_121890900_121892200
68268	chr9	+	1584	10	ISM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	0	47085	0	0	5prime_fragment	FALSE	canonical	3	35	junction_4	9.15302014516399	67	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGGGTCATGGTGTCC	5128	False	NA	NA	False	NA	NA	NA	75139301	75165648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240
68270	chr11	-	1780	13	ISM	ENSMUSG00000005237.15	ENSMUST00000035539.12	13569	85	93476	15024	14614	-15024	internal_fragment	FALSE	canonical	0	0	junction_1	1.65621724286265	1	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATATCATCCCCAGC	8811	False	NA	NA	False	NA	NA	NA	69341906	69326658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69326793_69326963_69327113_69327309_69327461_69327606_69327674_69327747_69327897_69327996_69328123_69328622_69328788_69337104_69337222_69337400_69337571_69338621_69338764_69338939_69339057_69339217_69339429_69341824
68271	chr11	+	1035	6	NIC	ENSMUSG00000020386.6	novel	1201	7	NA	NA	19	-65	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	291.41544228129	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACGGTTTCCAAGACTACT	3591	False	NA	NA	False	NA	NA	NA	51654539	51682687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51654619_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
68272	chr3	+	504	5	NNC	ENSMUSG00000042747.13	novel	582	5	NA	NA	144	-5	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	777.449154285989	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTAGCTGTGTCTGTGAA	7735	False	NA	NA	False	NA	NA	NA	89153884	89157024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89153956_89154084_89154240_89154371_89154436_89156380_89156448_89156877
68273	chr8	+	1017	5	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	20	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	38.9294233196435	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGTGGTTCAGATAGACA	NA	False	NA	NA	False	NA	NA	NA	126460996	126474956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472179_126474495
68274	chrX	-	1211	12	Antisense	novelGene_ENSMUSG00000089357.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCACGGACTGGGCTCCG	NA	False	NA	NA	False	NA	NA	NA	72047272	72030977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72031122_72040636_72040717_72040885_72041012_72041343_72041407_72042138_72042180_72042273_72042351_72042854_72042942_72043620_72043705_72044588_72044674_72045006_72045051_72046178_72046263_72046976
68276	chr7	-	651	2	ISM	ENSMUSG00000025468.16	ENSMUST00000211044.2	1029	6	11412	6	11412	0	3prime_fragment	FALSE	canonical	3	34	junction_1	0	96	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGGGTCGTGGTTTCTC	9451	False	NA	NA	False	NA	NA	NA	139650728	139649799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139649947_139650224
68277	chr13	-	1465	1	ISM	ENSMUSG00000056749.8	ENSMUST00000071065.8	2026	2	12400	0	12400	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCGGCTCTGTTCCACTT	NA	False	NA	NA	False	NA	NA	NA	53122709	53121244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_53121200_53122700
68279	chr9	-	1364	4	NNC	ENSMUSG00000032475.16	novel	4476	4	NA	NA	26	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.4152298679729	2	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGATATTGCATCTG	NA	False	NA	NA	False	NA	NA	NA	100428149	100377056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_100377640_100379588_100380024_100390481_100390726_100428047
68280	chr17	+	1197	5	ISM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	2	76	2	-13	intron_retention	FALSE	canonical	3	354	junction_1	33.9659756226728	169	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACCTTTAAAATGACTGG	4919	False	NA	NA	False	NA	NA	NA	33848065	33850677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102
68282	chr19	-	1788	11	FSM	ENSMUSG00000025223.16	ENSMUST00000026252.14	1718	11	12	-82	12	9	multi-exon	FALSE	canonical	3	350	junction_1	132.738992010637	534	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTAAAAAAAAAAGTCACT	7030	False	NA	NA	False	NA	NA	NA	46033341	46021045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
68283	chr4	-	2289	12	FSM	ENSMUSG00000037306.14	ENSMUST00000054096.13	4715	12	1173	1253	650	-1253	multi-exon	FALSE	canonical	3	25	junction_8	6.8947219003122	14	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGCCGTCACCAGCTGGC	NA	False	NA	NA	False	NA	NA	NA	134430428	134290253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_134291144_134291815_134291932_134293138_134293312_134296206_134296427_134303250_134303367_134305596_134305691_134308081_134308200_134311610_134311706_134318666_134318748_134320560_134320677_134367597_134367695_134430255
68286	chr5	+	1944	3	ISM	ENSMUSG00000029186.13	ENSMUST00000031082.8	3034	10	19264	8	6272	-8	3prime_fragment	FALSE	canonical	3	152	junction_1	2.5	18	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGAAGCTCCATTGTTC	NA	False	NA	NA	False	NA	NA	NA	52918215	52926674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_52918350_52919773_52919834_52924924
68287	chr1	+	1906	11	ISM	ENSMUSG00000039318.13	ENSMUST00000069652.8	7052	35	62320	2682	2595	-108	3prime_fragment	FALSE	canonical	3	69	junction_4	8.59127464349732	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTGTATAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	184998633	185016274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_184999272_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
68288	chr17	-	1449	10	NIC	ENSMUSG00000023931.6	novel	2661	13	NA	NA	802	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_9	12.0503060767439	1	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCTAAAATGTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	53769532	53705923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_53706148_53707773_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53769458
68289	chr14	+	698	1	FSM	ENSMUSG00000021967.5	ENSMUST00000224313.2	519	1	-177	-2	19	2	mono-exon	FALSE	NA	NA	NA	NA	NA	181	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGTCTCATACGGAATA	NA	False	NA	NA	False	NA	NA	NA	58063709	58064407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_58063700_58064400
68290	chr14	-	2445	7	FSM	ENSMUSG00000007989.8	ENSMUST00000131309.3	12734	7	60	10229	60	7041	multi-exon	FALSE	canonical	2	2	junction_3	9.80504405338848	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTTGCCTTCGCATGG	NA	False	NA	NA	False	NA	NA	NA	65499852	65440126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_65440382_65447140_65447375_65449523_65449673_65472362_65473381_65477166_65477364_65490392_65490913_65499780
68291	chr10	-	758	1	Intergenic	novelGene_3402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAGATGTCTACAAACTC	4979	False	NA	NA	False	NA	NA	NA	17943068	17942310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_17942300_17943100
68292	chr19	-	2525	1	NIC	ENSMUSG00000074746.4	novel	5982	5	NA	NA	41843	-4235	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCAACAACACTTTCTAT	9065	False	NA	NA	False	NA	NA	NA	59292369	59289844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_59289800_59292400
68293	chr6	+	1733	3	ISM	ENSMUSG00000029832.17	ENSMUST00000005103.12	2544	4	18317	47	18238	-47	3prime_fragment	FALSE	canonical	3	21	junction_1	2.5	15	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAATATTTAACTTGTGT	NA	False	NA	NA	False	NA	NA	NA	51427966	51435701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_51428124_51433573_51433658_51434209
68294	chr6	+	2355	1	FSM	ENSMUSG00000100876.2	ENSMUST00000189942.2	3148	1	457	336	457	-336	mono-exon	FALSE	NA	NA	NA	NA	NA	5	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCTGCTGTCATTTGT	NA	False	NA	NA	False	NA	NA	NA	134875380	134877735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134875400_134877700
68297	chr10	+	1379	10	Intergenic	novelGene_3549	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	12	junction_7	31.3970982381776	8	23	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCCAGTCTTCAAATGAT	NA	False	NA	NA	False	NA	NA	NA	120359299	120374521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120359328_120359405_120359477_120360126_120360189_120363521_120363638_120364338_120364520_120369971_120370079_120370224_120370312_120373440_120373621_120373690_120373794_120374077
68300	chr5	-	822	4	FSM	ENSMUSG00000059518.15	ENSMUST00000034953.14	764	4	-58	0	14	0	multi-exon	FALSE	canonical	3	69	junction_3	111.749720357592	1417	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTCATTCTGGG	NA	False	NA	NA	False	NA	NA	NA	137015741	137011047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137015664
68301	chr11	+	2052	1	ISM	ENSMUSG00000017781.18	ENSMUST00000143219.8	3761	12	38644	12	6070	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	17	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAAAAGTCACTTACAGT	1192	False	NA	21	True	NA	NA	NA	75517566	75519618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75517600_75519600
68302	chr12	+	401	2	Genic_Genomic	ENSMUSG00000096942.2	novel	438	1	NA	NA	-26	-12	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGCATTAGAACAAAGG	NA	False	NA	NA	False	NA	NA	NA	110864521	110864973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_110864840_110864890
68303	chr7	-	1661	12	FSM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	-2	3	-2	-3	multi-exon	FALSE	canonical	2	11	junction_1	3.71283233757493	42	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCCTCCCGTGTGTGACA	NA	False	NA	NA	False	NA	NA	NA	19530736	19513645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19513722_19514697_19514773_19514894_19515002_19518727_19518806_19519162_19519325_19520107_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
68305	chr11	-	1251	7	NNC	ENSMUSG00000020116.8	novel	1544	7	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	558.345696380537	26	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	17161553	17153197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161027_17161479
68307	chr12	-	1265	4	NNC	ENSMUSG00000020973.8	novel	3390	3	NA	NA	1308	-756	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	123.075405973556	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGACAGGTTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	69243895	69236616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_69237169_69239581_69239726_69243265_69243523_69243583
68309	chr2	-	2289	6	ISM	ENSMUSG00000038990.15	ENSMUST00000108891.2	2975	10	11308	9	-423	-6	3prime_fragment	FALSE	canonical	0	0	junction_5	51.5728610802232	27	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAACATACTTCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	179903981	179900341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_179901977_179902067_179902273_179902436_179902544_179902869_179902974_179903308_179903475_179903909
68310	chr19	-	1614	7	FSM	ENSMUSG00000071573.15	ENSMUST00000096114.13	1597	7	-14	-3	-14	3	multi-exon	FALSE	canonical	2	11	junction_4	3.8151743807532	28	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGTTTTATAGCCTCACA	NA	False	NA	NA	False	NA	NA	NA	33369679	33115143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33367316_33367460_33368479_33368586_33369354
68311	chr14	-	1291	1	Antisense	novelGene_ENSMUSG00000092232.2_AS_novelGene_ENSMUSG00000022194.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGCTGTTGCACCATAG	NA	False	NA	NA	False	NA	NA	NA	55134589	55133298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55133300_55134600
68312	chr2	+	662	4	FSM	ENSMUSG00000074578.15	ENSMUST00000125841.3	525	4	-1	-136	1	-4	multi-exon	FALSE	canonical	3	874	junction_1	54.7783412186483	54	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATCTGCTGTGTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	166905141	166907778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_166905218_166905555_166905648_166907078_166907401_166907606
68313	chr5	+	818	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1184	-5	at_least_one_novel_splicesite	FALSE	canonical	3	2118	junction_4	157.856540884437	4924	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTGGTGATTGTT	NA	False	NA	NA	False	NA	NA	NA	115603136	115612776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115603279_115604200_115604380_115608840_115609001_115610051_115610180_115612567
68314	chr19	-	1538	10	Antisense	novelGene_ENSMUSG00000054843.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTCGTCACAAGCTAGG	NA	False	NA	NA	False	NA	NA	NA	57720048	57670817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_57670887_57673934_57674142_57675087_57675209_57680197_57680330_57684603_57684785_57687945_57688161_57690417_57690609_57695346_57695563_57703014_57703153_57719980
68316	chr9	-	1753	7	ISM	ENSMUSG00000006235.7	ENSMUST00000006397.7	1761	8	960	28	18	-28	3prime_fragment	FALSE	canonical	3	6	junction_3	3.85861230093008	20	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATATATCGATTTTTC	NA	False	NA	NA	False	NA	NA	NA	21873842	21870220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21870967_21871056_21871145_21871819_21871908_21871985_21872140_21872743_21872902_21872986_21873163_21873499
68318	chr2	-	1253	2	Antisense	novelGene_ENSMUSG00000087570.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	1	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTAGTGTTTGCCAATT	NA	False	NA	NA	False	NA	NA	NA	71573944	71572484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_71573596_71573802
68319	chr8	+	1112	7	Genic_Genomic	ENSMUSG00000090118.2	novel	1119	2	NA	NA	7847	-736	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	53	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATGGGAATCAGCACGGA	NA	False	NA	NA	False	NA	NA	NA	125566283	125589706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_125566705_125567191_125567235_125568031_125568124_125568430_125568524_125569105_125569161_125587685_125588010_125589622
68320	chr10	+	1621	3	ISM	ENSMUSG00000003070.7	ENSMUST00000003154.7	2131	4	7364	7	7364	-7	3prime_fragment	FALSE	canonical	3	63	junction_1	2	25	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTAAGCGTGGGCCTCTC	3024	False	NA	NA	False	NA	NA	NA	80022679	80025837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80022900_80024275_80024342_80024502
68321	chr6	-	859	3	NNC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	453.5	9	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8451	False	NA	NA	False	NA	NA	NA	72339372	72336696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72337294_72338409_72338523_72339223
68322	chr17	+	909	9	FSM	ENSMUSG00000094724.9	ENSMUST00000089119.13	1783	9	366	508	33	0	multi-exon	FALSE	canonical	0	0	junction_3	237.179784130098	499	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	7246359	7265589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_7246498_7248506_7248568_7251537_7251591_7252454_7252513_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
68323	chr6	-	1319	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9132	687	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	9.35414346693485	133	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATCAGTTGTTCCTACC	NA	False	NA	NA	False	NA	NA	NA	108600088	108586606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590909_108590955_108599998
68324	chr15	+	831	1	Intergenic	novelGene_3376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCCCTAAAGCTTATTTA	1890	False	NA	NA	False	NA	NA	NA	102404301	102405132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_102404300_102405100
68325	chr5	-	262	2	Genic_Genomic	ENSMUSG00000081865.2	novel	828	1	NA	NA	726	320	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAAATAGACAGATAATGC	3866	False	NA	NA	False	NA	NA	NA	110265989	110265567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_110265784_110265943
68326	chr5	+	1630	1	Genic_Genomic	ENSMUSG00000087439.2	novel	NA	NA	NA	NA	13890	421	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTGTCCACATCCTCCA	NA	False	NA	NA	False	NA	NA	NA	110423924	110425554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_110423900_110425600
68327	chr11	+	942	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	150	1725	88	238	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTTCAGTTAGTATCT	NA	False	NA	NA	False	NA	NA	NA	76298118	76305393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
68329	chr11	+	616	1	Antisense	novelGene_ENSMUSG00000017386.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGAACTCTCATCCAGG	NA	False	NA	NA	False	NA	NA	NA	78050241	78050857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_78050200_78050900
68331	chr2	+	880	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	18	1	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	20.5	163	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTGGTAATGACCCTT	NA	False	NA	NA	False	NA	NA	NA	179056746	179058676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_179056894_179057392_179057714_179058264
68332	chrX	+	1327	11	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	-17	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	518.650710979943	159	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAAAAAGGTTTTAACAT	NA	False	NA	NA	False	NA	NA	NA	74460285	74494827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74460448_74461997_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289_74494347_74494499
68336	chr8	+	1326	1	FSM	ENSMUSG00000023235.15	ENSMUST00000207925.2	2549	1	1551	-328	1551	328	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTAGAACTATCAAAAATC	NA	False	NA	NA	False	NA	NA	NA	4383809	4385135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_4383800_4385100
68337	chr12	+	1051	7	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2389.29457860125	1	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAACTGGCTACACCATG	NA	False	NA	NA	False	NA	NA	NA	24758281	24763295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24760266_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
68339	chr7	+	1431	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	50	3	8	-3	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	302	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTGCTGTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	119701625	119720206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
68340	chr12	-	1249	1	Intergenic	novelGene_4414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCATCTTCCTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	78555217	78553968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_78554000_78555200
68341	chr6	-	855	6	NIC	ENSMUSG00000014554.14	novel	828	7	NA	NA	-32	-4	combination_of_known_junctions	TRUE	canonical	3	8	junction_3	86.9726393758405	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATCCAGTTGTTCGTT	NA	False	NA	NA	False	NA	NA	NA	83483857	83457204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83457419_83458328_83458445_83458759_83458821_83463965_83464114_83467402_83467591_83483729
68342	chr9	+	1389	12	FSM	ENSMUSG00000032359.15	ENSMUST00000034915.15	1617	12	222	6	-17	-4	multi-exon	FALSE	canonical	2	5	junction_2	3.46648653907957	60	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCCCTGGGCGTAGGTC	NA	False	NA	NA	False	NA	NA	NA	89936541	89958136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_89936688_89942531_89942564_89943571_89943678_89944769_89944841_89946205_89946311_89946559_89946647_89947444_89947501_89949079_89949162_89950457_89950527_89953871_89953979_89956920_89957047_89957734
68343	chr10	-	318	1	Antisense	novelGene_ENSMUSG00000035011.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGTAGAGGGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	80987149	80986831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_80986800_80987100
68344	chr19	-	1838	17	FSM	ENSMUSG00000061132.14	ENSMUST00000054769.7	2097	17	259	0	-128	0	multi-exon	FALSE	canonical	0	0	junction_13	9.12221704137761	69	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	NA	NA	NA	40982719	40917370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_40917737_40922870_40923027_40924716_40924801_40926094_40926172_40927810_40927843_40928615_40928701_40931745_40931789_40932570_40932599_40933930_40934001_40939397_40939470_40940794_40940877_40948142_40948307_40950788_40950946_40952686_40952728_40956942_40956993_40961029_40961096_40982454
68346	chr2	+	1293	1	Intergenic	novelGene_2718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCTTGTATGAAGACAG	NA	False	NA	NA	False	NA	NA	NA	139866814	139868107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_139866800_139868100
68347	chr15	-	766	1	Antisense	novelGene_ENSMUSG00000051864.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	981	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAATTACTTACGTGAT	NA	False	NA	NA	False	NA	NA	NA	86098679	86097913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_86097900_86098700
68348	chr10	+	3304	1	Intergenic	novelGene_3509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	73	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCTTCGAGAATTGTCAA	NA	False	NA	NA	False	NA	NA	NA	95058330	95061634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_95058300_95061600
68349	chr11	-	2079	5	NIC	ENSMUSG00000020889.12	novel	2721	8	NA	NA	66	-532	intron_retention	FALSE	canonical	3	30	junction_4	2.77263412660235	2	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATGTATCCCCATGGA	NA	False	NA	NA	False	NA	NA	NA	98666093	98660704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
68351	chr4	+	649	3	Intergenic	novelGene_1991	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	52	junction_1	9.5	198	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTAAGTATTTTCCTAT	4298	False	NA	NA	False	NA	NA	NA	138225899	138255972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_138226002_138226562_138226737_138255599
68352	chr11	+	1372	1	Antisense	novelGene_ENSMUSG00000078622.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	69	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTTGATTATCTGGAAG	4818	False	NA	NA	False	NA	NA	NA	106090182	106091554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106090200_106091600
68353	chr15	-	881	8	NNC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	26	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1088.61218521378	2	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGACCTGCTGAGATTAAA	NA	False	NA	NA	False	NA	NA	NA	75781114	75767371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75767441_75767580_75767753_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
68354	chr7	+	1491	6	NNC	ENSMUSG00000070837.7	novel	1320	7	NA	NA	-80	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	170.73792783093	23	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCAATATTCTTGCTTGAG	3000	False	NA	NA	False	NA	NA	NA	6998587	7006084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6999301_6999517_6999561_7000533_7000652_7002977_7003127_7005355_7005531_7005791
68356	chr1	+	1344	10	NNC	ENSMUSG00000046101.17	novel	2553	15	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_9	8.26116902019605	20	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTGAACATTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	9978885	9992745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9992548
68357	chr13	-	706	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1170	-5	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	24.5	133	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATCCTCCTCCATCTTT	NA	False	NA	NA	False	NA	NA	NA	98854188	98849586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98850076_98852942_98853093_98854121
68361	chr6	-	1938	1	ISM	ENSMUSG00000030306.15	ENSMUST00000060095.15	8383	20	209972	50	207218	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATTTATGTAAATGTC	NA	False	NA	NA	False	NA	NA	NA	148135915	148133977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_148134000_148135900
68362	chr15	-	1733	1	Antisense	novelGene_ENSMUSG00000022452.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACCGGCTTGGGCAAAAT	NA	False	NA	NA	False	NA	NA	NA	82232202	82230469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_82230500_82232200
68363	chr16	-	987	1	Intergenic	novelGene_3611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATCAGAGCACCTAGTGT	NA	False	NA	NA	False	NA	NA	NA	20269419	20268432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_20268400_20269400
68365	chr2	-	1140	8	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-115	77	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	12.82694867242	1	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCCTCTTCTAATCCAG	NA	False	NA	NA	False	NA	NA	NA	59708805	59691827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473
68367	chrX	-	480	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	227.721760049408	31	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	20828230	20818161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827918_20828026_20828172
68368	chr13	-	2334	4	FSM	ENSMUSG00000095930.2	ENSMUST00000178142.2	4103	4	-68	1837	-68	-1837	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	37	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCCCCTACAAAGTCTCT	NA	False	NA	NA	False	NA	NA	NA	120217486	120173466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_120174332_120175643_120175913_120189115_120190060_120217230
68369	chr4	+	1380	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	-19	6	-19	-6	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	328	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATAACGTTTTTTTAGT	NA	False	NA	NA	False	NA	NA	NA	133311653	133319040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
68370	chr7	+	758	4	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	22	4	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	41.2148840428633	359	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGGTATTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	81173340	81181250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_81173472_81178534_81178689_81179094_81179276_81180958
68371	chr19	-	1090	8	NNC	ENSMUSG00000024867.15	novel	1216	4	NA	NA	14	20189	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.9639021430554	15	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTTTTATCTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	24533222	24353335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_24353474_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
68374	chr9	+	1362	8	ISM	ENSMUSG00000074452.14	ENSMUST00000098906.9	1690	11	195	18933	195	-30	5prime_fragment	FALSE	canonical	0	0	junction_4	5.15078753637713	5	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATCTGTAAATATACTGT	NA	False	NA	NA	False	NA	NA	NA	35481774	35582681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_35481827_35485525_35485684_35518890_35519016_35523067_35523168_35580718_35581031_35581174_35581199_35581774_35581907_35582222
68379	chr6	-	1596	5	Antisense	novelGene_ENSMUSG00000039958.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	83	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACGTGAAGGCGGCGA	NA	False	NA	NA	False	NA	NA	NA	149052659	149043076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_149043199_149044099_149044212_149045529_149045937_149048651_149048787_149051839
68380	chr15	-	625	5	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-1	-85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2678.18244104094	49	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGCGTCTGCAGTTAC	NA	False	NA	NA	False	NA	NA	NA	31601887	31591030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31595902_31595990_31597556_31597722_31598145_31598207_31601746
68381	chr19	+	1738	3	NNC	ENSMUSG00000033863.3	novel	4486	2	NA	NA	-263	668	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	241	1	59	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAGGTGCAAGAGTTAT	NA	False	NA	NA	False	NA	NA	NA	23118326	23143503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_23118442_23119457_23119624_23142046
68382	chr5	+	1742	1	Intergenic	novelGene_975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTCAATAGTCCACTTCC	3737	False	NA	NA	False	NA	NA	NA	149148007	149149749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_149148000_149149700
68383	chr5	-	2724	3	NIC	ENSMUSG00000067642.12	novel	3099	14	NA	NA	-1970	-2	intron_retention	FALSE	canonical	2	4	junction_1	0.5	9	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACAACAAAAGAGGTCATT	4700	False	NA	NA	False	NA	NA	NA	30403386	30398434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_30398560_30400040_30402614_30403360
68384	chr1	+	1417	6	Antisense	novelGene_ENSMUSG00000009905.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	61	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACTGATGAGCGGCGACA	NA	False	NA	NA	False	NA	NA	NA	106651629	106687306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_106652705_106675217_106675313_106675499_106675565_106680939_106680998_106683172_106683262_106687271
68385	chr5	+	1449	10	FSM	ENSMUSG00000029130.13	ENSMUST00000160246.8	1565	10	24	92	24	-49	multi-exon	FALSE	canonical	3	8	junction_1	13.0421917418852	84	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTTAACTGTGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	29401027	29430430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29401083_29401577_29401644_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
68387	chr6	+	242	1	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	73147	26	20668	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTGTAATTAAAGTATAGT	NA	False	NA	NA	False	NA	NA	NA	71959191	71959433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_71959200_71959400
68388	chr11	-	1120	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	119	82	-5	-82	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAAGGCGCTGGTTGCTGCT	6880	False	NA	NA	False	NA	NA	NA	69553349	69547604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
68392	chr8	-	837	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3516	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	20.8173004974228	310	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTGATAGGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	11716120	11705477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712774_11715035_11715099_11715899
68393	chr12	+	1111	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	-3	544	-3	-99	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	37	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGTTAATTTCTATATC	NA	False	NA	NA	False	NA	NA	NA	28725226	28731630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
68394	chr11	+	1478	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1222	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	16.078320705043	48	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	5891	False	NA	NA	False	NA	NA	NA	70546805	70553339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70546896_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
68395	chr7	+	1427	7	FSM	ENSMUSG00000054065.13	ENSMUST00000160403.8	1425	7	1	-3	1	0	multi-exon	FALSE	canonical	3	51	junction_3	7.83156008298049	179	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCAGCTCCGTGTGTTTC	615	False	NA	NA	False	NA	NA	NA	140668059	140670423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
68396	chr19	+	890	3	FSM	ENSMUSG00000024925.12	ENSMUST00000155639.2	771	3	-115	-4	-13	2	multi-exon	FALSE	canonical	3	241	junction_2	34.5	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGAGTCTGTGGGCACC	5032	False	NA	NA	False	NA	NA	NA	5651887	5652964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5652109_5652220_5652403_5652477
68397	chr2	+	1097	3	Intergenic	novelGene_2651	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4	69	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACACTATTGAGTTGG	NA	False	NA	NA	False	NA	NA	NA	72497966	72502816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_72498033_72500813_72501123_72502094
68398	chr2	-	3080	1	Intergenic	novelGene_2672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTTCTTCCCTCCCAAC	NA	False	NA	NA	False	NA	NA	NA	93888402	93885322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_93885300_93888400
68399	chr15	+	855	5	NNC	ENSMUSG00000001285.13	novel	918	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	213.588828125443	31	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCCAGTCCCTGATCCA	5930	False	NA	NA	False	NA	NA	NA	102240146	102246286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245402_102246081
68400	chr3	-	766	7	NIC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	59	-43	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	150.104870747828	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCCCATTTGTCCTACA	1369	False	NA	NA	False	NA	NA	NA	95041191	95037082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95037274_95037474_95037670_95040135_95040225_95040327_95040423_95040510_95040600_95040868_95040940_95041155
68403	chr10	-	1275	2	NNC	ENSMUSG00000025407.8	novel	4057	13	NA	NA	5349	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	7	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAACAAGCATCACCTGTC	9440	False	NA	NA	False	NA	NA	NA	127167575	127165758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127166028_127166569
68404	chr5	-	653	3	NNC	ENSMUSG00000015806.13	novel	1380	7	NA	NA	-6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	455	77	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTTTTTCACTC	NA	False	NA	NA	False	NA	NA	NA	45607524	45591395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_45591813_45604950_45605011_45607348
68405	chr17	+	963	9	NNC	ENSMUSG00000094724.9	novel	1783	9	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	310.371148788028	491	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	7246366	7265589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_7246498_7248506_7248568_7251537_7251591_7252454_7252513_7256120_7256192_7259018_7259194_7262027_7262074_7263832_7263908_7265296
68408	chr6	-	1500	1	Genic_Genomic	ENSMUSG00000107714.2	novel	NA	NA	NA	NA	94579	546	mono-exon	FALSE	NA	NA	NA	NA	NA	11	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAACTATCGACTACTAC	NA	False	NA	NA	False	NA	NA	NA	107159120	107157620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_107157600_107159100
68410	chr10	+	509	2	Antisense	novelGene_ENSMUSG00000069682.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTTTTTTTGAGCCAA	NA	False	NA	NA	False	NA	NA	NA	29574747	29575376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_29575022_29575141
68414	chr17	+	451	3	FSM	ENSMUSG00000024038.18	ENSMUST00000064798.16	493	3	33	9	-2	-4	multi-exon	FALSE	canonical	3	3604	junction_2	48.5	12751	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGCTCACTATGTGGTTA	NA	False	NA	NA	False	NA	NA	NA	31739121	31750296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31739236_31740542_31740667_31750083
68415	chr2	-	2594	4	ISM	ENSMUSG00000026987.17	ENSMUST00000137480.8	740	6	174	20581	26	5293	5prime_fragment	FALSE	canonical	3	18	junction_2	66.7149824918578	1	50	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCACCTACTTAATAACCA	NA	False	NA	NA	False	NA	NA	NA	59955910	59829599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_59831901_59836386_59836534_59907213_59907256_59955806
68417	chr17	+	493	4	ISM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	8	1641	-6	824	5prime_fragment	FALSE	canonical	3	1085	junction_2	48.8011839564939	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGGGGGTAGCCGGAAG	NA	False	NA	NA	False	NA	NA	NA	46957162	46959417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397
68419	chr8	+	1698	2	NNC	ENSMUSG00000110605.2	novel	3767	3	NA	NA	-36	-4300	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGTCTCTCATGATTCTT	NA	False	NA	NA	False	NA	NA	NA	129990085	129994049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_129991675_129993940
68420	chr19	+	1432	4	FSM	ENSMUSG00000024986.13	ENSMUST00000025944.9	1802	4	312	58	312	1	multi-exon	FALSE	canonical	3	34	junction_1	4.18993502999218	38	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCTGTTTGAATTCTCAT	NA	False	NA	NA	False	NA	NA	NA	37423569	37429121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_37423682_37425636_37425816_37426014_37426066_37428031
68421	chr5	-	1751	7	FSM	ENSMUSG00000029311.17	ENSMUST00000031251.16	1825	7	59	15	-22	-15	multi-exon	FALSE	canonical	0	0	junction_2	2.86744175568088	87	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGATAAAGTATCTGTCTC	NA	False	NA	NA	False	NA	NA	NA	104169726	104137642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_104138461_104140683_104140801_104151037_104151176_104156444_104156552_104157660_104157793_104166039_104166148_104169395
68424	chr11	+	258	1	Intergenic	novelGene_2480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGGTGAAATAAACCTGA	NA	False	NA	NA	False	NA	NA	NA	101149271	101149529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_101149300_101149500
68428	chr6	-	1710	15	Antisense	novelGene_ENSMUSG00000039629.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCCTACCGTAGCTCCAA	NA	False	NA	NA	False	NA	NA	NA	29938554	29917038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_29917228_29920458_29920529_29923911_29923987_29924962_29925097_29926549_29926677_29927319_29927384_29927580_29927689_29928428_29928561_29929777_29929982_29931117_29931353_29931760_29931828_29932199_29932257_29932981_29933060_29937578_29937654_29938459
68429	chr7	-	1267	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205995.2	1337	2	51	19	51	-19	multi-exon	FALSE	canonical	2	6	junction_1	0	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATACAGTTTAACCACCAC	NA	False	NA	NA	False	NA	NA	NA	41148781	41139289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_41140493_41148717
68430	chr3	+	642	5	NNC	ENSMUSG00000038619.13	novel	1130	4	NA	NA	0	-1619	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	231.406568618957	197	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTACGTTTTCTTCATCTCC	382	False	NA	NA	False	NA	NA	NA	95532303	95537794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95532488_95534059_95534186_95535851_95536019_95536546_95536610_95537692
68431	chr6	-	1563	1	Antisense	novelGene_ENSMUSG00000100680.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACGGTTCTCAGGGACCAA	NA	False	NA	NA	False	NA	NA	NA	91419561	91417998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_91418000_91419600
68432	chr15	-	820	2	Genic_Genomic	ENSMUSG00000082585.4	novel	648	1	NA	NA	-123	496	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTATTAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	73966305	73965038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_73965094_73965540
68433	chr2	+	1340	1	ISM	ENSMUSG00000048186.15	ENSMUST00000138322.2	2860	5	48062	24	48062	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAATAAATTACTTTAAT	NA	False	NA	NA	False	NA	NA	NA	4805589	4806929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_4805600_4806900
68434	chr17	+	1261	9	NNC	ENSMUSG00000059714.14	novel	1825	13	NA	NA	10	1534	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	65.1435913962379	4	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTCTGTGTGCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	36134248	36138183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36137804
68435	chr19	-	1998	4	Antisense	novelGene_ENSMUSG00000024817.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	39	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATCATCTCTTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	30071086	30064653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_30064721_30065881_30066739_30069432_30069533_30070112
68438	chr10	-	695	7	NNC	ENSMUSG00000062981.6	novel	677	6	NA	NA	46	13	at_least_one_novel_splicesite	FALSE	canonical	2	39	junction_3	1963.6323201885	1	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCCTTTCATGTATCCA	NA	False	NA	NA	False	NA	NA	NA	95336339	95316682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95316840_95326107_95326275_95326396_95326444_95326648_95326729_95329492_95329578_95332685_95332750_95336244
68441	chr7	+	1088	5	FSM	ENSMUSG00000030922.13	ENSMUST00000054440.11	752	5	-15	-321	0	1	multi-exon	FALSE	canonical	3	10	junction_1	26.343879744639	175	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTTGTTTTGTTGATT	NA	False	NA	NA	False	NA	NA	NA	119495089	119515977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_119495114_119499333_119499532_119509026_119509186_119513395_119513489_119515363
68443	chr19	-	801	7	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	0	-636	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	430.781234761012	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTGTGCGCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	7181784	7176210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176438_7176558_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754
68445	chr19	-	1289	8	ISM	ENSMUSG00000024738.7	ENSMUST00000025647.7	1417	9	1255	7	1	-7	3prime_fragment	FALSE	canonical	3	9	junction_1	1.72614942479922	67	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCACTGATACTAACGT	NA	False	NA	NA	False	NA	NA	NA	10654180	10646326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_10646626_10646718_10646818_10646891_10647037_10649151_10649269_10651001_10651202_10652190_10652310_10652407_10652526_10653988
68446	chr14	-	1233	11	NIC	ENSMUSG00000068758.9	novel	1614	12	NA	NA	38	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	9.8974744253269	205	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCCTGTGCTGCTATCA	NA	False	NA	NA	False	NA	NA	NA	8123285	8114271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8118956_8119076_8119495_8119729_8120390_8120521_8120818_8120943_8121694_8121850_8123250
68447	chr10	+	2621	15	ISM	ENSMUSG00000019846.12	ENSMUST00000019992.6	6046	38	55	48537	0	3984	5prime_fragment	FALSE	canonical	0	0	junction_6	2.71052370871575	7	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACATACGTATCCAACAT	NA	False	NA	NA	False	NA	NA	NA	38841565	38937647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_38842146_38881407_38881510_38886993_38887119_38893316_38893398_38902530_38902746_38904617_38904693_38906428_38906581_38909006_38909118_38918576_38918689_38921648_38921817_38923929_38924124_38929736_38929854_38932772_38932922_38936122_38936265_38937349
68448	chr17	+	1151	1	Intergenic	novelGene_306	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCGTTTTGAATTTTAATA	2409	False	NA	NA	False	NA	NA	NA	84103258	84104409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_84103300_84104400
68449	chr18	+	1018	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	2	-5	1	5	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	2754	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTATTTATTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	31922213	31929759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
68450	chr11	-	2169	15	NNC	ENSMUSG00000018334.19	novel	2748	13	NA	NA	12523	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	10.2919128148151	23	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGAGTGGCTCTTGCTTGT	9980	False	NA	NA	False	NA	NA	NA	78935930	78907858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78908163_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854_78919910_78924043_78924210_78927320_78927428_78927512_78927575_78928977_78929062_78931702_78931764_78935665
68451	chr8	+	1176	4	ISM	ENSMUSG00000079003.4	ENSMUST00000095228.5	2265	5	1469	-3	546	3	3prime_fragment	FALSE	canonical	3	529	junction_1	19.7709101684492	300	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTCATTTTCTGTATGG	2537	False	NA	NA	False	NA	NA	NA	84725598	84727041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84725870_84725952_84726050_84726144_84726257_84726345
68452	chr15	+	1911	15	Antisense	novelGene_ENSMUSG00000009733.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACTCGAAGCGCAAACCC	NA	False	NA	NA	False	NA	NA	NA	100400682	100449869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_100401050_100409594_100409718_100410087_100410217_100410962_100411052_100411908_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418591_100420261_100420377_100423447_100423554_100425757_100425832_100426272_100426430_100449205_100449391_100449794
68453	chr13	-	1012	4	NNC	ENSMUSG00000043190.15	novel	1436	4	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	34.4125300177453	3	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTAAAGTAATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	76166687	76150887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_76151208_76156101_76156137_76156229_76156406_76166206
68456	chrX	+	1200	6	FSM	ENSMUSG00000031226.14	ENSMUST00000119477.2	1239	6	36	3	22	-3	multi-exon	FALSE	canonical	3	15	junction_5	564.946723151838	51	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTAAGGCCAGAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	104123402	104160693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104159919
68457	chr19	-	943	5	ISM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	160	-1	160	0	3prime_fragment	FALSE	canonical	3	57	junction_3	9.36416040016402	421	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9384	False	NA	NA	False	NA	NA	NA	4109135	4107476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734
68459	chr6	+	1617	2	FSM	ENSMUSG00000034639.8	ENSMUST00000049246.7	1612	2	-5	0	-5	0	multi-exon	FALSE	canonical	1	3	junction_1	0	46	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTCCCGATCTTATTA	NA	False	NA	NA	False	NA	NA	NA	108042000	108054083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_108042201_108052666
68460	chr5	-	395	1	Intergenic	novelGene_845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACACACACACACACCC	NA	False	NA	NA	False	NA	NA	NA	119848973	119848578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_119848600_119849000
68461	chr7	+	1116	1	Antisense	novelGene_ENSMUSG00000070520.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	187	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCGGCGCGGGACGTGCTG	9657	False	NA	NA	False	NA	NA	NA	64521444	64522560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_64521400_64522600
68462	chr3	-	2037	1	Antisense	novelGene_ENSMUSG00000054199.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGGAACGTCAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	88810603	88808566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88808600_88810600
68464	chr7	-	1487	3	ISM	ENSMUSG00000059119.10	ENSMUST00000209098.2	2281	15	13161	15937	322	-2359	intron_retention	FALSE	canonical	3	1047	junction_1	31	1	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTACTTCACCAATCCTGT	5157	False	NA	NA	False	NA	NA	NA	143089404	143083261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_143083295_143086045_143086118_143088022
68465	chr2	-	818	1	ISM	ENSMUSG00000005802.13	ENSMUST00000005952.11	5458	7	20565	24	20565	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAAAATGTACAGTCCC	NA	False	NA	NA	False	NA	NA	NA	122523994	122523176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_122523200_122524000
68466	chr2	+	2634	5	NNC	ENSMUSG00000039496.9	novel	3013	4	NA	NA	-33	-135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2	11	51	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAGGAGCTATTTGAAAA	924	False	NA	NA	False	NA	NA	NA	3514033	3527278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_3514125_3520337_3520466_3522052_3522195_3524847_3525291_3525448
68467	chr14	-	2511	7	ISM	ENSMUSG00000021798.15	ENSMUST00000064098.14	2299	15	33177	-1098	21526	864	3prime_fragment	FALSE	canonical	2	3	junction_5	1.46249406456535	15	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTTTACATATACATGG	NA	False	NA	NA	False	NA	NA	NA	34277425	34250130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_34251507_34258521_34258638_34263824_34263946_34264383_34264565_34265929_34266375_34274133_34274280_34277299
68468	chr7	-	782	3	NIC	ENSMUSG00000040564.15	novel	432	4	NA	NA	0	-3	intron_retention	FALSE	canonical	3	965	junction_2	154.5	60	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGCTCCCTGAAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	19426563	19423408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_19423562_19425812_19426412_19426533
68472	chr1	-	886	5	NNC	ENSMUSG00000026701.16	novel	959	6	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	744.110374877276	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAAACCTTCTCGGGATT	NA	False	NA	NA	False	NA	NA	NA	161078736	161069124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_161069420_161071144_161071292_161071770_161071913_161074826_161074984_161078591
68473	chr14	-	1805	1	Intergenic	novelGene_622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTCTGAGTGCTGGGGTT	NA	False	NA	NA	False	NA	NA	NA	78864896	78863091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_78863100_78864900
68474	chr12	+	1494	2	Intergenic	novelGene_4418	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	25	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTCTATCTCTATACCAG	NA	False	NA	NA	False	NA	NA	NA	80057326	80062013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_80057457_80060649
68475	chr1	-	1204	1	ISM	ENSMUSG00000073678.5	ENSMUST00000097739.5	10583	27	83471	14	55235	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	23	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTGGTACAAAGATTGT	NA	False	NA	NA	False	NA	NA	NA	54513370	54512166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_54512200_54513400
68476	chr7	+	766	2	FSM	ENSMUSG00000087138.2	ENSMUST00000152595.2	704	2	-64	2	9	-2	multi-exon	FALSE	canonical	3	24	junction_1	0	108	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCGGCTACAGACTGAT	NA	False	NA	NA	False	NA	NA	NA	44636332	44641750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44636795_44641446
68478	chr8	-	968	3	ISM	ENSMUSG00000001062.19	ENSMUST00000155869.8	2728	15	8917	48	1738	-47	3prime_fragment	FALSE	canonical	3	15	junction_2	2.5	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGTGGCTACCAACTC	NA	False	NA	NA	False	NA	NA	NA	123971931	123969144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_123969929_123970426_123970532_123971852
68479	chr17	+	685	2	Intergenic	novelGene_109	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAATCTTCTGTCTACC	15	True	NA	NA	False	NA	NA	NA	27398174	27398980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_27398464_27398584
68480	chr16	+	1066	4	NNC	ENSMUSG00000022947.9	novel	703	4	NA	NA	-24	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.3368420080726	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTATTTGGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	93480078	93487875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93480218_93480342_93480502_93481934_93482043_93487215
68482	chr10	+	673	4	FSM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	288	-22	288	0	multi-exon	FALSE	canonical	3	15821	junction_1	833.259196702256	1971	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7234	False	NA	NA	False	NA	NA	NA	75771694	75773581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408
68483	chrX	+	807	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	13	-32	-7	32	multi-exon	FALSE	canonical	3	149	junction_3	8.37987005998436	1077	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTAGAGCTATACGATTA	NA	False	NA	NA	False	NA	NA	NA	152506598	152524292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
68486	chr4	+	615	4	NNC	ENSMUSG00000029066.13	novel	764	4	NA	NA	-50	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	608.124987153134	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTTGTGAGTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	155888165	155893284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155888200_155888289_155888401_155891321_155891443_155892935
68487	chr2	+	2014	1	Antisense	novelGene_ENSMUSG00000051413.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCCCTCTTTCTTGCCTG	1683	False	NA	NA	False	NA	NA	NA	153070902	153072916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_153070900_153072900
68488	chr12	-	1094	9	NNC	ENSMUSG00000002679.15	novel	1059	8	NA	NA	-18	1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	207.176517431392	978	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCATGCCTTTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	81641755	81620337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81640654_81640722_81641713
68489	chr10	+	1426	5	NNC	ENSMUSG00000038240.14	novel	4075	8	NA	NA	2	-22298	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	32.5614803103299	18	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTTTATTGTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	43097483	43259093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43258649
68490	chr6	-	1893	3	ISM	ENSMUSG00000030035.15	ENSMUST00000131939.6	1902	4	332	3	32	-3	intron_retention	FALSE	canonical	3	157	junction_1	4	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTGTGATTCTGGGT	NA	False	NA	NA	False	NA	NA	NA	83098208	83096028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83096702_83096848_83097026_83097165
68491	chr19	-	1923	7	Antisense	novelGene_ENSMUSG00000090369.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCTTACCCCCGACCCC	64	False	NA	NA	False	NA	NA	NA	42059392	42034015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_42034548_42048324_42048456_42048605_42048732_42049364_42049502_42049741_42049838_42051629_42051770_42058631
68492	chr1	-	867	6	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	22	3243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1161.2953801682	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGATACTTGTAATCCG	NA	False	NA	NA	False	NA	NA	NA	13730748	13696975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700426_13708440_13708576_13720944_13721109_13730552
68494	chr13	+	2182	7	NIC	ENSMUSG00000041112.18	novel	3748	5	NA	NA	356	-1825	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	14.4308696896618	54	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGCTGGTGTTTTGATT	NA	False	NA	NA	False	NA	NA	NA	20657251	20790698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_20657458_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
68495	chr11	-	527	3	NNC	ENSMUSG00000043284.13	novel	1511	3	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	337.5	19	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTGTTCTCTTTTCTGC	7827	False	NA	NA	False	NA	NA	NA	60769620	60755278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60755477_60755927_60756175_60769538
68498	chr15	-	2223	7	NNC	ENSMUSG00000000489.8	novel	2944	7	NA	NA	1	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	5.93483127158829	8	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACGTGAATCTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	79897403	79880075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79897250
68499	chrX	+	728	5	NIC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	100	junction_3	582.767964116079	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5416	False	NA	NA	False	NA	NA	NA	72830617	72834432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72830913_72832440_72832560_72833405_72833481_72833964_72834031_72834259
68500	chr8	-	595	5	NNC	ENSMUSG00000036199.10	novel	1251	5	NA	NA	910	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3126.250019992	6714	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGACTCTATCGTGGATC	NA	False	NA	NA	False	NA	NA	NA	70354298	70346818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70347061_70347153_70347226_70347891_70347971_70353687_70353783_70354191
68504	chr15	+	702	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	-26	1414	-26	548	multi-exon	FALSE	canonical	3	1440	junction_1	0	5610	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGTCTCTCTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	99623501	99625999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_99623730_99625525
68505	chr11	+	2174	1	Intergenic	novelGene_2217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTGACTCCCACATAGTA	NA	False	NA	NA	False	NA	NA	NA	9072255	9074429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_9072300_9074400
68507	chr7	-	2006	2	FSM	ENSMUSG00000040891.7	ENSMUST00000036018.6	2037	2	9	22	9	-22	multi-exon	FALSE	canonical	3	25	junction_1	0	14	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAAAAAGGCACCATCTC	NA	False	NA	NA	False	NA	NA	NA	18757454	18747230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_18749056_18757273
68508	chr2	-	2015	13	NNC	ENSMUSG00000027249.16	novel	1988	14	NA	NA	363	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	5.15522927607385	52	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGATCTCAGTGTGCCC	NA	False	NA	NA	False	NA	NA	NA	91466377	91455669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466084
68509	chr16	-	893	3	Antisense	novelGene_ENSMUSG00000116939.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTTCTTGGCACTTCAGA	NA	False	NA	NA	False	NA	NA	NA	93817048	93812304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_93812391_93814408_93814649_93816481
68510	chr5	-	1344	3	FSM	ENSMUSG00000041132.12	ENSMUST00000200840.2	1371	3	5	22	2	-19	multi-exon	FALSE	canonical	3	10	junction_2	1.5	28	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAATCTCTTTTAAAAA	4565	False	NA	NA	False	NA	NA	NA	150517988	150515238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_150516025_150516604_150516903_150517728
68512	chr18	+	719	4	ISM	ENSMUSG00000073563.4	ENSMUST00000069597.8	4249	13	71353	1787	1231	288	3prime_fragment	FALSE	canonical	3	32	junction_2	81.8141525382715	2	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTTGTGGCATCTGCA	NA	False	NA	NA	False	NA	NA	NA	54066546	54086833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_54066618_54081119_54081227_54081716_54081741_54086316
68513	chr5	+	1286	2	ISM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	102	9295	-3	536	5prime_fragment	FALSE	canonical	3	209	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135661573	135665935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135661773_135664848
68515	chr14	-	2411	1	ISM	ENSMUSG00000034731.12	ENSMUST00000226342.3	15257	30	166636	4980	63134	-4980	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTCTTCTGTTTTATAA	NA	False	NA	NA	False	NA	NA	NA	78803580	78801169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_78801200_78803600
68516	chr2	-	796	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	58	6	58	-6	multi-exon	FALSE	canonical	3	2071	junction_1	68	772	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTGTTTGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	148717438	148713647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_148713964_148714736_148714851_148717072
68517	chr14	-	542	1	Antisense	novelGene_ENSMUSG00000022070.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTAGAAAGAAATCAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	99285278	99284736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_99284700_99285300
68518	chr15	-	632	6	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1142.58345865849	8	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2665	False	NA	NA	False	NA	NA	NA	43146113	43113453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113609_43134293_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
68519	chr17	+	1330	1	FSM	ENSMUSG00000036430.9	ENSMUST00000040434.9	1164	1	-39	-127	-39	127	mono-exon	FALSE	NA	NA	NA	NA	NA	66	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAATAAATAATAAGGATG	5268	False	NA	NA	False	NA	NA	NA	47201570	47202900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47201600_47202900
68520	chr14	+	1565	6	FSM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	-16	0	0	0	multi-exon	FALSE	canonical	3	443	junction_3	21.4532048887806	265	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	376	False	NA	NA	False	NA	NA	NA	25694577	25700892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
68522	chr4	-	1937	5	Antisense	novelGene_ENSMUSG00000074088.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAATATGCCTGGGACAT	NA	False	NA	NA	False	NA	NA	NA	130283804	130276087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_130277306_130278272_130278356_130279744_130279806_130282364_130282472_130283336
68523	chr8	+	2162	12	FSM	ENSMUSG00000031831.7	ENSMUST00000093100.3	2821	12	57	602	57	-602	multi-exon	FALSE	canonical	0	0	junction_2	1.65144564768954	15	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTCAGCACGTTATTGG	NA	False	NA	NA	False	NA	NA	NA	120302030	120324591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120302207_120304069_120304206_120305966_120306059_120309247_120309470_120309585_120309753_120314916_120315039_120317317_120317476_120318439_120318698_120321571_120321664_120322682_120322743_120323425_120323823_120324309
68525	chr19	+	2312	12	NNC	ENSMUSG00000032702.17	novel	5637	14	NA	NA	-79	-298	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	34.4313906364095	1	101	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACTTCTATATGAAATTG	NA	False	NA	NA	False	NA	NA	NA	25214259	25411562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_25214357_25295668_25295797_25355774_25355895_25399507_25399706_25400282_25400392_25401501_25401748_25403260_25403334_25405340_25405561_25407584_25407728_25408242_25408444_25410228_25410328_25410884
68526	chr16	+	791	7	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	17622	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	442.56540634	1	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAATCCTTTTAGAAAA	1317	False	NA	NA	False	NA	NA	NA	48432651	48451254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447475_48451094
68527	chrX	+	543	1	Intergenic	novelGene_4108	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATCTTCAGAGACTTGCT	7526	False	NA	NA	False	NA	NA	NA	168802773	168803316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_168802800_168803300
68528	chr19	+	1067	3	FSM	ENSMUSG00000024959.15	ENSMUST00000235240.2	1169	3	92	10	92	-6	multi-exon	FALSE	canonical	3	98	junction_1	2.5	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCATGTGCCGCCGCGCCT	9476	False	NA	NA	False	NA	NA	NA	6920023	6929251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6920415_6928007_6928199_6928766
68529	chr19	+	853	1	Antisense	novelGene_ENSMUSG00000071573.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCCCTAAGAAGTTCTCAA	NA	False	NA	NA	False	NA	NA	NA	33369253	33370106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_33369300_33370100
68530	chr1	-	2491	1	NIC	ENSMUSG00000026458.14	novel	6067	29	NA	NA	3424	-22971	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCCCCAGTACCGGGGCT	NA	False	NA	NA	False	NA	NA	NA	134251580	134249089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_134249100_134251600
68531	chr4	+	1330	8	Antisense	novelGene_ENSMUSG00000028411.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCTGCTCTACTGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	40686245	40703162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_40686714_40688108_40688213_40690968_40691194_40693387_40693451_40694877_40695139_40695378_40695421_40697212_40697354_40703136
68533	chr9	+	659	2	Intergenic	novelGene_1051	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	8	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGCATGACTGCCTTT	6328	False	NA	NA	False	NA	NA	NA	57117197	57120034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_57117312_57119489
68535	chr1	+	1789	4	ISM	ENSMUSG00000026031.16	ENSMUST00000114309.8	2010	5	12865	2	-4393	-2	3prime_fragment	FALSE	canonical	0	0	junction_1	0.471404520791032	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTCTTTGTGCATTTGCT	6926	False	NA	NA	False	NA	NA	NA	58765317	58772384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_58765892_58768214_58768321_58770310_58770447_58771411
68536	chrX	+	1858	5	FSM	ENSMUSG00000031217.9	ENSMUST00000052839.7	3258	5	35	1365	35	396	multi-exon	FALSE	canonical	3	33	junction_1	5.76085931090146	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAGTTTTGTAGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	98179770	98191232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_98180620_98188897_98189176_98190083_98190177_98190357_98190484_98190720
68537	chr2	-	1211	3	FSM	ENSMUSG00000037773.15	ENSMUST00000142536.2	2243	3	1423	-391	1361	391	multi-exon	FALSE	canonical	3	37	junction_1	1	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCTCATCAGAGAAGTAA	9448	False	NA	NA	False	NA	NA	NA	130264807	130263418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130264057_130264144_130264296_130264385
68539	chr15	+	1644	13	NNC	ENSMUSG00000078954.10	novel	1527	13	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	72.9552754927443	363	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	84604266	84656408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84604309_84604580_84604715_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
68541	chrX	+	1126	7	ISM	ENSMUSG00000031303.9	ENSMUST00000033665.9	4348	29	129311	7	129311	-7	3prime_fragment	FALSE	canonical	3	28	junction_3	17.3437468718716	21	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGACTGAAGTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	158900739	158906340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_158900837_158901536_158901643_158902505_158902720_158904641_158904755_158905357_158905459_158905529_158905607_158905922
68542	chr2	-	1109	9	FSM	ENSMUSG00000026946.10	ENSMUST00000145481.8	1162	9	45	8	11	-4	multi-exon	FALSE	canonical	1	2	junction_3	2.57087047515039	29	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGTCAGTGTCTTCT	8687	False	NA	NA	False	NA	NA	NA	51862971	51838520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862599_51862640_51862920
68544	chr17	+	917	4	NIC	ENSMUSG00000023861.18	novel	920	5	NA	NA	0	1	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	472.094858641307	4208	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTGAGTGTGACTATA	2155	False	NA	NA	False	NA	NA	NA	8502627	8516490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_8502794_8515366_8515464_8515655_8515789_8515969
68545	chr2	-	877	5	NNC	ENSMUSG00000027581.13	novel	1136	5	NA	NA	374	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	77.5995328594187	38	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTAGTGGCAGTGGCACAA	NA	False	NA	NA	False	NA	NA	NA	180955919	180948267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955855
68547	chr7	+	1156	7	Antisense	novelGene_ENSMUSG00000030591.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	54	9	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGACCGAGGTGGCCGCGG	7439	False	NA	NA	False	NA	NA	NA	28873678	28879803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_28874173_28874835_28874950_28875499_28875596_28876484_28876659_28878344_28878449_28878567_28878646_28879707
68551	chr14	-	3082	2	FSM	ENSMUSG00000071531.4	ENSMUST00000226613.2	10354	2	14	7258	14	2470	multi-exon	FALSE	canonical	0	0	junction_1	0	3	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCCTGTGCTCTGGCCAG	NA	False	NA	NA	False	NA	NA	NA	33923576	33914902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_33917775_33923366
68552	chr5	+	1764	1	Antisense	novelGene_ENSMUSG00000029422.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAAATAAAAACCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	123884902	123886666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_123884900_123886700
68553	chr18	-	2503	1	ISM	ENSMUSG00000024427.8	ENSMUST00000025295.8	4755	2	11291	1375	11291	-1375	mono-exon	FALSE	NA	NA	NA	NA	NA	3	97	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACATACACAGACCCTCTA	NA	False	NA	NA	False	NA	NA	NA	38723177	38720674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_38720700_38723200
68555	chr15	+	1400	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	8	3	8	-3	multi-exon	FALSE	canonical	3	201	junction_3	14.7986485869487	362	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCAAGTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	79400619	79411937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
68556	chr5	+	1009	5	FSM	ENSMUSG00000060063.10	ENSMUST00000071130.5	1251	5	199	43	199	-43	multi-exon	FALSE	canonical	3	24	junction_2	7.22841614740048	96	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGATAATTAAAATCACAAT	NA	False	NA	NA	False	NA	NA	NA	149201775	149224920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
68557	chr17	-	552	3	ISM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	4842	0	4842	0	3prime_fragment	FALSE	canonical	3	65	junction_1	4	492	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6678	False	NA	NA	False	NA	NA	NA	47706667	47705482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_47705746_47706032_47706127_47706472
68558	chrX	-	1083	3	Intergenic	novelGene_4061	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	42	junction_1	13	302	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCTAGAGTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	138300912	138296085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_138296298_138297305_138297544_138300279
68559	chr19	-	1014	2	NNC	ENSMUSG00000024742.16	novel	2152	2	NA	NA	-4	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	54	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTATAAAAGTGACCAGAA	2151	False	NA	NA	False	NA	NA	NA	10181311	10176515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10177281_10181062
68560	chr14	+	1811	1	Intergenic	novelGene_610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTGGTAAAACCTTAAG	9844	False	NA	NA	False	NA	NA	NA	75062225	75064036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_75062200_75064000
68562	chr9	-	747	4	NNC	ENSMUSG00000032112.11	novel	1220	5	NA	NA	17	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	404.204843557763	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTGTTTTCTCTCCTA	1490	False	NA	NA	False	NA	NA	NA	44318880	44315061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44315396_44315630_44315758_44318100_44318276_44318769
68567	chr15	+	872	1	Intergenic	novelGene_3317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCTCTGTTCCATCCAC	NA	False	NA	NA	False	NA	NA	NA	77984352	77985224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_77984400_77985200
68569	chr9	+	846	6	NNC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	3	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	879.633105334264	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATAATGAATGATGTAAT	NA	False	NA	NA	False	NA	NA	NA	54493767	54511226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497209_54499687_54499762_54502449_54502565_54503289_54503340_54510746
68570	chr13	-	1530	7	NNC	ENSMUSG00000069170.15	novel	1592	7	NA	NA	-14261	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.5802377666941	1	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAAATTTTGTGTGGGTC	NA	False	NA	NA	False	NA	NA	NA	81747236	81727183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81747139
68571	chr7	+	1623	9	FSM	ENSMUSG00000006205.14	ENSMUST00000006367.8	2041	9	416	2	416	-2	multi-exon	FALSE	canonical	3	73	junction_3	16.015617378047	43	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTGGCGTGCTTCTTTT	7038	False	NA	NA	False	NA	NA	NA	130538348	130587388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_130538474_130563242_130563343_130563702_130563908_130581030_130581226_130581681_130581715_130583386_130583502_130583966_130584025_130585389_130585486_130586692
68574	chr14	-	1704	1	Intergenic	novelGene_529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATGCTATCCCAAAAGT	NA	False	NA	NA	False	NA	NA	NA	26245365	26243661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_26243700_26245400
68576	chrX	+	935	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	-19	-132	-19	0	multi-exon	FALSE	canonical	3	325	junction_1	51.8975854447969	2189	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	NA	NA	NA	93410703	93460699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
68577	chr2	+	1910	3	ISM	ENSMUSG00000026833.19	ENSMUST00000028177.11	2757	6	9047	3	9047	-3	3prime_fragment	FALSE	canonical	3	35	junction_1	7	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTCGATTTGCTTATTG	9250	False	NA	NA	False	NA	NA	NA	28104717	28120745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28104841_28112562_28112670_28119065
68579	chr5	-	1476	11	NIC	ENSMUSG00000039886.9	novel	1559	12	NA	NA	-65	-2	intron_retention	FALSE	canonical	3	674	junction_9	27.4	1019	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGATGGACTGTGGATG	5238	False	NA	NA	False	NA	NA	NA	135773127	135764340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
68582	chrX	-	1258	1	NIC	ENSMUSG00000036022.16	novel	4334	9	NA	NA	22343	-556	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACCTGGTGCCTTAAGGG	NA	False	NA	NA	False	NA	NA	NA	52335554	52334296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_52334300_52335600
68583	chr16	-	1069	4	ISM	ENSMUSG00000022805.18	ENSMUST00000023501.16	3048	17	37079	0	36748	0	3prime_fragment	FALSE	canonical	3	28	junction_1	8.01387685344754	55	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGTTGTTTGTAAAGCT	NA	False	NA	NA	False	NA	NA	NA	38125426	38118115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140
68584	chr13	-	1410	2	ISM	ENSMUSG00000050876.10	ENSMUST00000066510.8	4261	4	2010	2561	2010	39	3prime_fragment	FALSE	canonical	1	1	junction_1	0	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAACATTCCAAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	59851985	59850457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_59851837_59851954
68585	chr11	+	1356	1	Intergenic	novelGene_2487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGCATGAGTCAGAGGATA	NA	False	NA	NA	False	NA	NA	NA	103279848	103281204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_103279800_103281200
68586	chr5	+	2137	2	ISM	ENSMUSG00000044134.10	ENSMUST00000056654.8	2368	4	2172	25	2162	-25	3prime_fragment	FALSE	canonical	3	47	junction_1	0	20	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGGGCCAAAATAAAAGCC	7596	False	NA	NA	False	NA	NA	NA	121989229	121992637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121989343_121990613
68587	chr4	-	1396	4	NNC	ENSMUSG00000038544.15	novel	1654	3	NA	NA	-7	-142	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	109.77552854196	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGGTTATTCAGTTTG	-18	True	NA	NA	False	NA	NA	NA	59783856	59774229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_59775313_59775446_59775550_59782253_59782335_59783727
68588	chr4	+	1573	1	Intergenic	novelGene_1957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCATCCAAACAACAGTT	NA	False	NA	NA	False	NA	NA	NA	127234897	127236470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_127234900_127236500
68589	chr16	+	988	6	NNC	ENSMUSG00000035376.11	novel	3598	7	NA	NA	-2	-2611	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	574.173980601699	1	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATGCAAAAGTCTGTTA	NA	False	NA	NA	False	NA	NA	NA	34842795	34926936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_34843006_34846194_34846313_34895957_34896065_34920125_34920248_34922315_34922495_34926684
68591	chr14	-	1271	4	ISM	ENSMUSG00000021948.18	ENSMUST00000022521.13	2612	17	1006	10985	-1	416	internal_fragment	FALSE	canonical	3	87	junction_1	4.92160768674447	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATTGGCCCATCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	30331253	30328299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_30329152_30329244_30329408_30329564_30329626_30331058
68593	chr18	-	265	3	Antisense	novelGene_ENSMUSG00000024608.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGGCAGCCAACATGGC	NA	False	NA	NA	False	NA	NA	NA	60911618	60910091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_60910162_60910882_60910960_60911500
68595	chr17	-	1163	8	NNC	ENSMUSG00000058704.10	novel	3163	9	NA	NA	1	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	101.295083185469	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACCTTCTATTTTAGTT	NA	False	NA	NA	False	NA	NA	NA	74601784	74507743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_74508321_74509255_74509361_74524021_74524047_74548917_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
68596	chr2	+	1859	15	FSM	ENSMUSG00000041966.19	ENSMUST00000064141.12	1905	15	24	22	21	-22	multi-exon	FALSE	canonical	3	15	junction_14	54.6553207074357	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTTTGTTTAGCTTCAGA	NA	False	NA	NA	False	NA	NA	NA	70886148	70929464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
68597	chr7	+	1078	11	Antisense	novelGene_ENSMUSG00000030846.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.3	1	49	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGGACTTCTGTCACAT	NA	False	NA	NA	False	NA	NA	NA	128044225	128056713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_128044387_128045531_128045668_128046001_128046129_128046336_128046422_128046535_128046632_128047376_128047486_128047921_128047997_128049844_128049933_128050065_128050120_128050343_128050439_128056661
68598	chr1	+	484	1	Intergenic	novelGene_479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGTTCTCCAAATTATT	6331	False	NA	NA	False	NA	NA	NA	170696342	170696826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_170696300_170696800
68599	chr7	+	422	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	91	593	-25	-53	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAAACGGACCCGCCCCA	2784	False	NA	NA	False	NA	NA	NA	4795963	4797472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
68600	chr6	-	1336	3	ISM	ENSMUSG00000053470.14	ENSMUST00000205470.2	1718	11	-9	8553	-9	-30	5prime_fragment	FALSE	canonical	3	172	junction_2	138	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGCTAGCTCTGGCACAA	NA	False	NA	NA	False	NA	NA	NA	71586132	71580145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_71581133_71584385_71584591_71585988
68601	chr9	+	1531	1	Antisense	novelGene_ENSMUSG00000032400.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	64077532	64079063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_64077500_64079100
68604	chr16	+	367	1	Intergenic	novelGene_3609	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGGCATTAGTCGTTTTA	NA	False	NA	NA	False	NA	NA	NA	20245312	20245679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_20245300_20245700
68605	chr13	-	1809	9	NNC	ENSMUSG00000069170.15	novel	2580	9	NA	NA	-14268	-742	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	14.422205101856	4	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACATCTAGGAGAAGCA	NA	False	NA	NA	False	NA	NA	NA	81747243	81726296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_81726512_81726838_81727116_81727403_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81747139
68606	chr6	+	2036	2	NNC	ENSMUSG00000092035.9	novel	6667	2	NA	NA	11025	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCCTGATCATTTCAG	10	False	NA	NA	False	NA	NA	NA	4758430	4760517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_4759625_4759675
68607	chr7	+	849	6	Antisense	novelGene_ENSMUSG00000005575.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	126	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCTTGCTGCTGCCCTTG	NA	False	NA	NA	False	NA	NA	NA	12769165	12771577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_12769684_12769769_12769835_12770140_12770240_12770357_12770399_12770491_12770588_12771547
68608	chr11	-	593	6	NNC	ENSMUSG00000020460.16	novel	791	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6097.42649320187	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	NA	False	NA	NA	NA	29497856	29495845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_29496030_29496290_29496478_29496702_29496789_29497205_29497261_29497680_29497746_29497840
68610	chr12	+	2844	2	FSM	ENSMUSG00000037638.6	ENSMUST00000169593.2	3478	2	47	587	9	-587	multi-exon	FALSE	canonical	1	1	junction_1	0	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCTGTGACTGAGTGATC	393	False	NA	NA	False	NA	NA	NA	112645320	112648594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_112645380_112645809
68611	chr11	+	1800	12	NIC	ENSMUSG00000018906.15	novel	1997	3	NA	NA	-17	-7	combination_of_known_junctions	TRUE	canonical	1	6	junction_1	24.1373480367652	9	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGAAGCCTTAAATAGCC	NA	False	NA	NA	False	NA	NA	NA	54004011	54022471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_54004156_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
68612	chr3	+	922	6	NNC	ENSMUSG00000015749.13	novel	2890	6	NA	NA	18	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	799.831832324771	1	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGTGTAGTTTGGTGCAT	NA	False	NA	NA	False	NA	NA	NA	95836612	95852879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836804_95836920_95836972_95844428_95844508_95845193_95845352_95851618_95851674_95852491
68613	chr3	+	976	1	ISM	ENSMUSG00000048332.14	ENSMUST00000059562.14	2108	4	219164	12	31367	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGATCAATAGCTTACTG	NA	False	NA	NA	False	NA	NA	NA	53168112	53169088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_53168100_53169100
68614	chr7	-	1552	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	12	18	-6	-18	multi-exon	FALSE	canonical	3	428	junction_5	40.804901666344	446	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTGAACAGAGGGCAAACT	NA	False	NA	NA	False	NA	NA	NA	118304989	118287785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
68615	chr15	+	931	5	FSM	ENSMUSG00000016758.5	ENSMUST00000016902.5	942	5	9	2	-1	0	multi-exon	FALSE	canonical	3	12	junction_1	7.58287544405155	140	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCCCCTTAGGTCGTCCT	NA	False	NA	NA	False	NA	NA	NA	83411071	83428833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_83411138_83425495_83425644_83427265_83427365_83427780_83427899_83428333
68617	chr10	-	720	3	ISM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	479	-1	-19	1	3prime_fragment	FALSE	canonical	3	559	junction_1	44.5	213	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTGTTTGAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	128758914	128755781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128755977_128756427_128756561_128758522
68618	chr3	-	810	1	Antisense	novelGene_ENSMUSG00000039756.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGTGCTGTTTCTCAGC	NA	False	NA	NA	False	NA	NA	NA	122069760	122068950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_122069000_122069800
68619	chr17	+	833	3	NIC	ENSMUSG00000002661.15	novel	917	4	NA	NA	4	-3	intron_retention	FALSE	canonical	3	443	junction_1	15.5	1699	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCATGGGATCTTCAA	375	False	NA	NA	False	NA	NA	NA	57304346	57306134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57304568_57305388_57305796_57305929
68620	chr13	-	709	3	FSM	ENSMUSG00000006717.8	ENSMUST00000006900.7	721	3	9	3	9	-3	multi-exon	FALSE	canonical	3	260	junction_1	3	1210	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGCTAAGGAAGTATTTTC	4826	False	NA	NA	False	NA	NA	NA	25015491	25001933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_25002175_25004697_25004883_25015208
68621	chr6	-	2650	1	ISM	ENSMUSG00000033420.13	ENSMUST00000042025.12	5253	18	199229	33	133708	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAATAATAATAA	6007	False	NA	NA	False	NA	NA	NA	87113517	87110867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87110900_87113500
68622	chr5	+	1432	12	NIC	ENSMUSG00000023353.15	novel	3207	18	NA	NA	85	-2228	combination_of_known_junctions	FALSE	canonical	3	94	junction_11	27.445814385307	1	54	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTTGGCAGGGGTGGTAG	NA	False	NA	NA	False	NA	NA	NA	24657416	24704807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24657533_24681375_24681435_24681630_24681719_24681901_24681988_24682066_24682209_24682736_24682872_24683007_24683136_24684628_24684788_24688338_24688432_24692786_24692892_24697955_24698125_24704655
68623	chr7	+	1259	5	NNC	ENSMUSG00000094152.6	novel	2865	13	NA	NA	-92	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	5.35607132140714	60	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCAGACTGCGTGAGGCT	NA	False	NA	NA	False	NA	NA	NA	44917481	44922783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44917623_44917871_44918074_44918141_44918357_44921914_44922078_44922245
68625	chr11	+	1372	1	Intergenic	novelGene_2276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAGGACTCCACCAAAAT	3839	False	NA	NA	False	NA	NA	NA	53191447	53192819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_53191400_53192800
68628	chr5	-	997	7	Antisense	novelGene_ENSMUSG00000029177.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCAGGACCGCCAGAACTC	NA	False	NA	NA	False	NA	NA	NA	30831670	30824283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_30824455_30826339_30826404_30827040_30827172_30829806_30829915_30830323_30830407_30830638_30830788_30831379
68631	chr19	-	1840	9	NNC	ENSMUSG00000024842.9	novel	3372	9	NA	NA	-4482	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1.87082869338697	36	21	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAATCTGGATGTGGTGG	3093	False	NA	NA	False	NA	NA	NA	4198514	4185427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4186015_4186112_4186261_4187105_4187216_4188525_4188692_4189201_4189546_4189742_4189877_4191741_4191945_4198259_4198356_4198462
68632	chr17	+	907	7	FSM	ENSMUSG00000002767.14	ENSMUST00000002844.14	1031	7	124	0	83	0	multi-exon	FALSE	canonical	3	984	junction_4	70.4430423975443	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTACTACCTTTTCACT	NA	False	NA	NA	False	NA	NA	NA	46957278	46961058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
68634	chr15	+	1533	8	NNC	ENSMUSG00000033088.20	novel	676	5	NA	NA	-6801	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	56.3875076626744	45	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTCTGTGGATGCTG	1817	False	NA	NA	False	NA	NA	NA	78879380	78890064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78879478_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
68636	chr13	+	1515	12	Antisense	novelGene_ENSMUSG00000038025.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGCCGCTCGCCCCGCCG	2062	False	NA	NA	False	NA	NA	NA	48971161	49024248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_48971342_48971777_48971870_48973017_48973104_48973512_48973623_48974000_48974095_48975011_48975168_48976423_48976612_48979527_48979669_48982260_48982423_48985479_48985597_48988687_48988772_49024143
68637	chr6	-	1511	6	NNC	ENSMUSG00000087341.5	novel	1734	7	NA	NA	-9148	-4271	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	19.6834956245073	21	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATAGAACAGGCTGCCCC	NA	False	NA	NA	False	NA	NA	NA	108600104	108558270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_108559210_108559502_108559716_108589268_108589394_108590092_108590176_108590909_108590955_108599998
68638	chr12	-	1049	6	Antisense	novelGene_ENSMUSG00000021103.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACACCTACAAAGAAAGAG	5848	False	NA	NA	False	NA	NA	NA	73319626	73214779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_73214927_73217367_73217441_73228556_73228696_73234910_73235039_73265793_73265916_73319186
68639	chr3	-	1984	1	ISM	ENSMUSG00000062232.15	ENSMUST00000118100.8	6573	24	80456	22	80456	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	24	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACATAAAGCCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	78971828	78969844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_78969800_78971800
68640	chr12	+	2490	2	Antisense	novelGene_ENSMUSG00000020664.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	96	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAATCAAAGAGAACATTAT	NA	False	NA	NA	False	NA	NA	NA	31390393	31393444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_31392811_31393371
68641	chr4	-	1924	9	FSM	ENSMUSG00000052914.5	ENSMUST00000030303.6	3605	9	88	1593	88	-1593	multi-exon	FALSE	canonical	1	1	junction_1	1.40867845869808	16	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTAATTGTTATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	96441810	96405967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_96406443_96411939_96412079_96414075_96414264_96417621_96417761_96419868_96420046_96423682_96423844_96424232_96424383_96433935_96434099_96441478
68642	chr9	-	2009	12	FSM	ENSMUSG00000032181.8	ENSMUST00000034699.8	2384	12	146	229	65	-53	multi-exon	TRUE	canonical	0	0	junction_7	2.00412797136805	13	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGATCTCTGTTGGGCAC	7940	False	NA	NA	False	NA	NA	NA	75591192	75550699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570474_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245_75589462_75589555_75589602_75590219_75590273_75590916
68643	chr7	+	1034	7	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	411	junction_1	82.4386977631797	1187	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	30262763	30264786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30264033_30264127_30264224_30264519
68644	chr8	-	1194	2	FSM	ENSMUSG00000053226.8	ENSMUST00000238279.2	1369	2	176	-1	176	0	multi-exon	FALSE	canonical	3	24	junction_1	0	79	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCGTGCTTCTTTCTG	575	False	NA	NA	False	NA	NA	NA	85558862	85542032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85543163_85558798
68645	chr11	-	1548	1	NIC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	7	-4298	mono-exon	FALSE	NA	NA	NA	NA	NA	15	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTTTTAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	77971202	77969654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_77969700_77971200
68646	chr2	-	982	11	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-39	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	336.274426622067	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAAGCCTACTGTGATG	NA	False	NA	NA	False	NA	NA	NA	5849701	5799476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809767_5826082_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
68649	chr11	-	1008	7	NNC	ENSMUSG00000064090.15	novel	1642	12	NA	NA	77507	36894	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAGCATGAAAGTAGGT	NA	False	NA	NA	False	NA	NA	NA	26421858	26384427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_26384498_26418331_26418417_26418669_26418717_26418799_26418883_26419651_26419767_26420874_26420946_26421321
68650	chr6	-	1152	1	FSM	ENSMUSG00000055430.5	ENSMUST00000059539.5	1844	1	669	23	266	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAAATCCTTGTTATTC	NA	False	NA	NA	False	NA	NA	NA	58883392	58882240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_58882200_58883400
68651	chr16	+	1437	1	Intergenic	novelGene_3640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAACTCTCTATTCTCT	7564	False	NA	NA	False	NA	NA	NA	32320106	32321543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_32320100_32321500
68652	chr2	-	662	1	FSM	ENSMUSG00000087701.5	ENSMUST00000120318.2	493	1	32	-201	32	201	mono-exon	FALSE	NA	NA	NA	NA	NA	55	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	51761598	51760936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_51760900_51761600
68653	chr5	+	1475	1	ISM	ENSMUSG00000056493.10	ENSMUST00000072837.7	7439	9	59037	0	59037	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCCAAGGGTATGAGTG	5183	False	NA	NA	False	NA	NA	NA	142446291	142447766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_142446300_142447800
68654	chr5	+	1367	1	NIC	ENSMUSG00000050022.17	novel	2683	8	NA	NA	2653	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	42	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTTTGTTTCTGTGTCA	2129	False	NA	NA	False	NA	NA	NA	140737690	140739057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_140737700_140739100
68659	chr17	-	1086	4	NIC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	10	-5	combination_of_known_junctions	FALSE	canonical	2	15	junction_3	490.80002716653	249	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAACCCTTACTGTG	NA	False	NA	NA	False	NA	NA	NA	13134980	13130240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_13130637_13132656_13132889_13134443_13134712_13134790
68662	chr5	+	874	5	FSM	ENSMUSG00000025825.13	ENSMUST00000026937.12	957	5	68	15	-2	0	multi-exon	FALSE	canonical	3	687	junction_1	28.9179874818425	183	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGTACTGAACCTGA	3663	False	NA	NA	False	NA	NA	NA	113910876	113916334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_113911006_113912323_113912438_113913278_113913390_113914831_113914911_113915893
68663	chr18	-	1870	1	Intergenic	novelGene_4563	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCCTGTGCTCACTCGTT	778	False	NA	NA	False	NA	NA	NA	73769730	73767860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_73767900_73769700
68664	chr4	-	558	6	NNC	ENSMUSG00000028447.12	novel	973	7	NA	NA	60	-153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	371.245255861944	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGAGCCTGTTGGCCTG	8166	False	NA	NA	False	NA	NA	NA	41723077	41714950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717401_41720824_41720868_41723034
68665	chr10	-	1391	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	159	4	1	-4	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	120	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACCTGCTGTCTGCACTG	NA	False	NA	NA	False	NA	NA	NA	13744565	13522801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
68667	chr13	-	2098	1	ISM	ENSMUSG00000032846.13	ENSMUST00000225822.4	5310	13	163338	11	7301	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	22	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAAGTTGATTCTGCCTC	7975	False	NA	NA	False	NA	NA	NA	107863260	107861162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_107861200_107863300
68669	chr11	-	1638	4	Antisense	novelGene_ENSMUSG00000040483.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	9	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCTGACTCACAGCGGC	3130	False	NA	NA	False	NA	NA	NA	72204320	72192429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72192533_72194146_72194285_72199428_72199557_72203051
68670	chr11	+	1202	6	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	-1052	-11	intron_retention	FALSE	canonical	0	0	junction_2	262.901046023024	1	77	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAACCAAGCCACCCCC	2196	False	NA	NA	False	NA	NA	NA	101014273	101017234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101014320_101014738_101014863_101015058_101015399_101015795_101015949_101016028_101016191_101016857
68671	chr7	+	2214	2	NNC	ENSMUSG00000108963.2	novel	5084	2	NA	NA	-8617	-4001	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	106	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCACACTCTTACTCTTAG	NA	False	NA	NA	False	NA	NA	NA	50811647	50822284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_50811737_50820159
68672	chr14	+	977	3	NNC	ENSMUSG00000040822.8	novel	893	3	NA	NA	-13	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	192.5	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAATAATTACTGGTGA	NA	False	NA	NA	False	NA	NA	NA	54924487	54928191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54924578_54927260_54927322_54927365
68674	chr9	-	2032	10	NNC	ENSMUSG00000032198.10	novel	6467	49	NA	NA	-5626	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	86.1301054320056	6	62	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAACCTGTGTGGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	21720923	21711480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714420_21715213_21715921_21716014_21716147_21720816
68677	chr19	-	1674	9	FSM	ENSMUSG00000025196.5	ENSMUST00000026210.5	1828	9	154	0	154	0	multi-exon	FALSE	canonical	3	15	junction_8	10.3191266587827	87	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	6016	False	NA	NA	False	NA	NA	NA	43974841	43944745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43969241_43969439_43974504
68678	chr5	+	764	7	ISM	ENSMUSG00000037736.21	ENSMUST00000201852.4	1018	8	112092	39	-40512	-39	3prime_fragment	FALSE	canonical	0	0	junction_1	0.471404520791032	1	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGCCACCTCCCCCCTGG	NA	False	NA	NA	False	NA	NA	NA	67015261	67131966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_67015297_67039241_67039312_67111011_67111119_67116930_67116962_67118499_67118611_67126418_67126615_67131752
68679	chr16	+	1204	1	ISM	ENSMUSG00000003233.13	ENSMUST00000171572.9	3983	16	15743	0	15621	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTATTATTATTATTATT	NA	False	NA	NA	False	NA	NA	NA	20351556	20352760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_20351600_20352800
68680	chr8	+	718	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	61	1	61	-1	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGGGTTTCTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	123829149	123831982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
68681	chr7	+	1333	13	Antisense	novelGene_ENSMUSG00000080478.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	22	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCGAGCCTCCTCCAGCC	NA	False	NA	NA	False	NA	NA	NA	15671770	15679820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_15671813_15672096_15672154_15672274_15672356_15672837_15672901_15673011_15673192_15673381_15673579_15673652_15673758_15674061_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679754
68682	chr6	-	1584	4	NNC	ENSMUSG00000032641.19	novel	1610	4	NA	NA	-133	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.7695526217005	1	80	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAAAGCTTTCACTATA	NA	False	NA	NA	False	NA	NA	NA	134874180	134846141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_134847446_134861122_134861191_134864592_134864749_134874124
68683	chr17	-	1110	8	NNC	ENSMUSG00000023935.11	novel	997	8	NA	NA	1600	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7.62380803664362	60	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTAAAGAATGTTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	45784152	45756812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45757010_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45784004
68685	SIRV6	+	429	5	NNC	SIRV6A	novel	574	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11380.4095159181	4	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1130	11279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1642_1761_10993_11109_11205
68686	chr15	-	380	1	Intergenic	novelGene_3290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCTTCCCCAACCCCTAT	NA	False	NA	NA	False	NA	NA	NA	50613505	50613125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_50613100_50613500
68687	chr11	+	582	3	FSM	ENSMUSG00000020267.7	ENSMUST00000020504.6	636	3	5	49	5	-49	multi-exon	FALSE	canonical	3	4351	junction_2	227.5	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTTAAAATTCTGTGCC	NA	False	NA	NA	False	NA	NA	NA	54757213	54761278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_54757427_54760673_54760779_54761014
68690	chr14	-	1131	3	ISM	ENSMUSG00000033166.12	ENSMUST00000228643.2	2971	20	20208	288	-849	-288	internal_fragment	FALSE	canonical	3	477	junction_1	9.5	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGAAGGTGGTAAAGGGGA	NA	False	NA	NA	False	NA	NA	NA	99316968	99314993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_99315821_99316563_99316723_99316823
68691	chr4	-	1585	10	ISM	ENSMUSG00000028484.17	ENSMUST00000107215.9	1898	11	634	25	354	-25	3prime_fragment	FALSE	canonical	3	354	junction_1	453.983058366665	216	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAGTTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	83404061	83380132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_83380711_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953
68692	chr12	+	1109	5	FSM	ENSMUSG00000047022.19	ENSMUST00000148418.8	1168	5	54	5	-1	-5	multi-exon	FALSE	canonical	3	68	junction_4	7.69740215917033	46	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATACATTGTATGTAT	NA	False	NA	NA	False	NA	NA	NA	57277275	57372856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309
68693	chr12	+	590	1	ISM	ENSMUSG00000020660.7	ENSMUST00000218089.2	977	3	5078	0	5059	0	mono-exon	FALSE	NA	NA	NA	NA	NA	100	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACAACTGTCCAGTTA	NA	False	NA	NA	False	NA	NA	NA	4010028	4010618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_4010000_4010600
68694	chr16	-	973	9	ISM	ENSMUSG00000022748.9	ENSMUST00000114371.5	1150	10	283300	-1	283230	1	3prime_fragment	TRUE	canonical	3	200	junction_5	23.459739448681	886	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTTTCTCTTTCCCCTC	NA	False	NA	NA	False	NA	NA	NA	57143909	57122361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_57122646_57124042_57124132_57127188_57127277_57127731_57127793_57131615_57131719_57133020_57133081_57136524_57136655_57138268_57138344_57143826
68697	chr11	-	744	2	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9978	False	NA	NA	False	NA	NA	NA	69812175	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808093_69811978
68700	chr7	-	903	6	FSM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	98	1827	20	-2	multi-exon	FALSE	canonical	3	237	junction_1	141.994366085419	80	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGACTTGTCTCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	140773775	140770844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140771108_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
68701	chr14	+	1656	9	FSM	ENSMUSG00000021809.11	ENSMUST00000022343.6	2494	9	6	832	5	-16	multi-exon	FALSE	canonical	2	6	junction_1	3.70809924354783	32	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATATGCTTTCGAATTCG	NA	False	NA	NA	False	NA	NA	NA	20344795	20366814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20344861_20350654_20350748_20354020_20354161_20356299_20356435_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
68703	chr15	-	1588	1	ISM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	19898	0	19814	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAATTTGGCCTTTCA	NA	False	NA	NA	False	NA	NA	NA	38956213	38954625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_38954600_38956200
68706	chr5	-	1107	5	FSM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	-9	4	5	-4	multi-exon	FALSE	canonical	3	70	junction_3	10.6389614154766	61	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGGAGAGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	113428462	113421821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
68709	chrX	-	2374	1	Antisense	novelGene_ENSMUSG00000071723.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	132	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCACAGCTGCGGCGGCGG	NA	False	NA	NA	False	NA	NA	NA	93682083	93679709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_93679700_93682100
68710	chr3	-	960	6	NIC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	495	4	combination_of_known_splicesites	TRUE	canonical	2	4	junction_2	13.8188277360998	9	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTAGACTCCAATGTGC	NA	False	NA	NA	False	NA	NA	NA	35691219	35672767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_35673025_35673834_35673956_35678500_35678611_35681522_35681682_35682985_35683124_35691044
68712	chr7	+	3112	1	Antisense	novelGene_ENSMUSG00000109115.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCTATCTGCATACCCT	NA	False	NA	NA	False	NA	NA	NA	67330386	67333498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_67330400_67333500
68714	chr16	+	348	1	Intergenic	novelGene_3855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTGTGAAAAATGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	90081484	90081832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_90081500_90081800
68715	chr16	+	903	1	Intergenic	novelGene_3856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCAGTACTGGGGAGGC	NA	False	NA	NA	False	NA	NA	NA	90081733	90082636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_90081700_90082600
68716	chr19	-	773	1	Intergenic	novelGene_1232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAATATTATTTTAGGCT	4956	False	NA	NA	False	NA	NA	NA	23070960	23070187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_23070200_23071000
68717	chr10	-	2186	7	Antisense	novelGene_ENSMUSG00000037440.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACGCCAGCCACCAAGACAT	6012	False	NA	NA	False	NA	NA	NA	23781221	23770799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_23770988_23773188_23773319_23774302_23774497_23775289_23775581_23776479_23776840_23779281_23779448_23780364
68718	chr11	-	1252	9	NNC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-121	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	74.929028920706	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTAGTTGCATTGATTC	NA	False	NA	NA	False	NA	NA	NA	113600473	113589003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113589383_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597400_113599636_113599681_113600053_113600182_113600306
68719	chr7	-	1185	8	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	13	-473	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	28.9517543791849	17	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAAGGACGTGTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	67269762	67164626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67267740_67267879_67268821_67268860_67269699
68720	chr6	-	1277	6	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	-53	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	57.3634029673973	21	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTAGGCGGACTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	83687967	83669784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672606_83672689_83672797_83673961_83674051_83687715
68721	chr13	+	1101	3	NNC	ENSMUSG00000096107.3	novel	1626	3	NA	NA	-80	-883	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	30	10	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATTTTAATTTTAATT	NA	False	NA	NA	False	NA	NA	NA	3411076	3412979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3411388_3411928_3412567_3412827
68723	chr3	+	1086	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	-4	562	-4	23	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	122	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTAATCCAACCTTGTTA	NA	False	NA	NA	False	NA	NA	NA	145643792	145650020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
68724	chr17	+	1551	1	NIC	ENSMUSG00000023939.8	novel	645	3	NA	NA	43	-10228	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCGGCATATATCCTATAA	NA	False	NA	NA	False	NA	NA	NA	45997325	45998876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_45997300_45998900
68725	ERCC-00145	+	1024	1	FSM	ERCC-00145A	DQ875386	1024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	169	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00145_+_0_1000
68727	chr4	+	1712	1	Antisense	novelGene_ENSMUSG00000050890.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATCCTTCTGTAGGATGC	NA	False	NA	NA	False	NA	NA	NA	134009892	134011604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_134009900_134011600
68730	chr6	-	1254	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5444	-9	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	37.4799946638203	252	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCAAGGTAGATTTAGGC	2728	False	NA	NA	False	NA	NA	NA	83675081	83669796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672825_83673961_83674051_83674952
68731	chr11	+	1611	1	NIC	ENSMUSG00000000378.16	novel	1858	10	NA	NA	-10041	-4857	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCCCGCTCCCCCAATA	4098	False	NA	NA	False	NA	NA	NA	6533006	6534617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6533000_6534600
68732	chr5	+	1496	9	Antisense	novelGene_ENSMUSG00000042216.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAGGGTGACCAATCAGC	NA	False	NA	NA	False	NA	NA	NA	113413556	113428468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_113413814_113414152_113414338_113416568_113416694_113421439_113421590_113422156_113422222_113423898_113424041_113426999_113427131_113427321_113427487_113428192
68733	chr12	-	1194	9	Antisense	novelGene_ENSMUSG00000070166.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGTTCCCGGAGCTAGATT	NA	False	NA	NA	False	NA	NA	NA	21351557	21336371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21336544_21340245_21340312_21341750_21341850_21343226_21343350_21345022_21345207_21346645_21346737_21347789_21347925_21350034_21350225_21351423
68735	chr14	-	1158	5	NIC	ENSMUSG00000021773.12	novel	981	6	NA	NA	-10	-13	intron_retention	FALSE	canonical	3	276	junction_4	6.05702071979286	1050	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTACTGGACACGCGAC	NA	False	NA	NA	False	NA	NA	NA	21898972	21897265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
68736	chr13	+	1873	1	ISM	ENSMUSG00000021756.13	ENSMUST00000183663.8	8678	17	43341	803	32365	-803	mono-exon	FALSE	NA	NA	NA	NA	NA	1	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGACCCTGCCATAAATGT	4473	False	NA	NA	False	NA	NA	NA	112643944	112645817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_112643900_112645800
68737	chr8	+	2150	9	FSM	ENSMUSG00000031627.10	ENSMUST00000034041.9	2497	9	38	309	9	-297	multi-exon	FALSE	canonical	0	0	junction_1	0.707106781186548	8	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTGAAGACGGAAAATAC	NA	False	NA	NA	False	NA	NA	NA	47192804	47300184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_47192972_47246527_47246621_47259505_47259606_47260256_47260434_47260739_47260787_47271825_47271944_47290708_47290874_47297855_47297903_47298948
68738	chr5	+	1585	6	NNC	ENSMUSG00000104932.2	novel	645	3	NA	NA	-7	8799	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.83836717690617	35	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAGAATGCTGTCATTTC	NA	False	NA	NA	False	NA	NA	NA	125438231	125456623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_125438555_125438768_125439044_125439613_125439727_125447425_125447515_125454603_125454786_125456020
68739	chr12	-	804	6	NNC	ENSMUSG00000049882.11	novel	875	6	NA	NA	23	-5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	71.8153187001214	12	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGTCTGAAGCAGCATG	NA	False	NA	NA	False	NA	NA	NA	69629766	69624406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629665
68740	chr2	-	1043	7	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-7	0	intron_retention	FALSE	canonical	0	0	junction_5	185.364505771736	1	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	NA	False	NA	NA	NA	26806549	26803394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26803671_26803924_26804088_26804186_26804260_26805443_26805527_26805607_26805729_26805966_26806013_26806268
68741	chr2	+	1547	5	Antisense	novelGene_ENSMUSG00000027122.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCGTCTCTGCACAGGCC	NA	False	NA	NA	False	NA	NA	NA	106794544	106804680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_106795218_106795767_106795994_106797446_106797582_106799442_106799903_106804627
68742	chr6	-	805	4	FSM	ENSMUSG00000002797.10	ENSMUST00000204301.3	431	4	-91	-283	-2	-1	multi-exon	FALSE	canonical	3	46	junction_2	52.7320269538984	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGGCCGTGGGTTCTCC	2698	False	NA	NA	False	NA	NA	NA	54969937	54962633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_54962987_54963817_54963954_54966484_54966543_54969679
68743	chr17	+	807	6	NIC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	2	-7	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	443.431437766877	3	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACGTGAAAACCTGCCTTA	7390	False	NA	NA	False	NA	NA	NA	36198835	36203551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36203310
68744	chr16	-	1163	11	ISM	ENSMUSG00000022680.15	ENSMUST00000115802.2	2466	14	67	9509	-9	779	5prime_fragment	FALSE	canonical	3	195	junction_3	12.7342059037853	54	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTTTTTTTTTTCTAAT	9761	False	NA	NA	False	NA	NA	NA	13720928	13676649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
68745	chr8	+	1773	4	ISM	ENSMUSG00000025809.16	ENSMUST00000090006.12	3815	16	37177	7	-1502	-7	3prime_fragment	FALSE	canonical	3	537	junction_3	32.3213036040731	1	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGATTTGTTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	129449311	129459674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_129449514_129450676_129450910_129452500_129452668_129458503
68746	chr7	+	894	7	NNC	ENSMUSG00000030795.19	novel	5536	15	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	307.254870678327	75	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTCTGTTTCCCCCAG	1199	False	NA	NA	False	NA	NA	NA	127566677	127581199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725_127571798_127580962
68747	chr17	+	623	3	NNC	ENSMUSG00000084880.2	novel	2944	3	NA	NA	-870	-2987	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	38	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGCACTTCCGCCGATCAG	NA	False	NA	13	True	NA	NA	NA	47997664	47999021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47997982_47998106_47998210_47998818
68749	chr4	+	266	1	Antisense	novelGene_ENSMUSG00000084807.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATGTCTGTCTCAAAGG	8592	False	NA	NA	False	NA	NA	NA	149864869	149865135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_149864900_149865100
68751	chr9	+	1253	1	Antisense	novelGene_ENSMUSG00000066839.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCCTCATACCTGGGAGT	NA	False	NA	NA	False	NA	NA	NA	21988772	21990025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_21988800_21990000
68753	chr9	+	2567	6	FSM	ENSMUSG00000032446.15	ENSMUST00000035020.15	3560	6	980	13	463	-13	multi-exon	FALSE	canonical	3	9	junction_5	4.35430821141545	17	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTTCTGTACTATGGA	NA	False	NA	NA	False	NA	NA	NA	118308391	118315187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_118308615_118309534_118309690_118310332_118310455_118311056_118311216_118311300_118311363_118313341
68754	chrX	-	869	1	Intergenic	novelGene_4102	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTCTGATCATCCTAC	NA	False	NA	NA	False	NA	NA	NA	161654162	161653293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_161653300_161654200
68756	chr16	-	2205	1	Intergenic	novelGene_3619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAATATTTCTATCACACC	7074	False	NA	NA	False	NA	NA	NA	22062184	22059979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_22060000_22062200
68757	chr18	+	762	7	NNC	ENSMUSG00000024481.6	novel	2053	9	NA	NA	14730	-416	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.74535599249993	1	13	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGAGTTGCTGAGAGCA	NA	False	NA	NA	False	NA	NA	NA	46997835	47014387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46997883_46999464_46999605_47006848_47006976_47009977_47010105_47011295_47011410_47013684_47013829_47014324
68759	chr12	+	1509	5	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	-3	-36	combination_of_known_junctions	FALSE	canonical	2	7	junction_2	104.784004027332	1	84	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAACTTGTTGAGTAAA	NA	False	NA	NA	False	NA	NA	NA	8258165	8334907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8258193_8270599_8270756_8318363_8318599_8325807_8325891_8333899
68761	chr16	-	532	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	-3	0	-3	0	multi-exon	FALSE	canonical	3	94	junction_1	0	338	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTATGTTTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	57427230	57381795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_57382126_57427028
68762	chr16	-	1315	3	NNC	ENSMUSG00000059920.10	novel	5522	3	NA	NA	188	-3975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	103.5	1	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTAGATGCCTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	64591336	64586473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_64587324_64589297_64589526_64591099
68763	chr2	-	2811	17	NIC	ENSMUSG00000041762.17	novel	3389	14	NA	NA	-15	3	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	2.09071608545972	8	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTTGTGTGTATTTCTA	NA	False	NA	NA	False	NA	NA	NA	73216802	73177987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_73178104_73178480_73178619_73179970_73180036_73182192_73182289_73183960_73184098_73186941_73187047_73192768_73192980_73194275_73194367_73194511_73194597_73197824_73197943_73198657_73198742_73200329_73200486_73201308_73201475_73203958_73204359_73212167_73212653_73213138_73213303_73216608
68764	chr6	-	1286	1	Intergenic	novelGene_4156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTCTAGTGTAATTGGAT	NA	False	NA	NA	False	NA	NA	NA	47162423	47161137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_47161100_47162400
68766	chr8	+	982	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	308	10	30	-10	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	1	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCATTATCGCTCTGCCTG	760	False	NA	NA	False	NA	NA	NA	70755475	70765630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
68768	chr5	-	900	4	FSM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	8	-9	8	0	multi-exon	FALSE	canonical	3	267	junction_3	133.312498372141	913	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	7986	False	NA	NA	False	NA	NA	NA	114266271	114261986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114266143
68770	chr5	+	1067	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	-31	-31	-31	0	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	270	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	1070	False	NA	NA	False	NA	NA	NA	137639564	137641161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
68771	chr4	-	427	3	Antisense	novelGene_ENSMUSG00000028936.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGGAGTATACAGAAAACAT	1867	False	NA	NA	False	NA	NA	NA	152416937	152411936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_152412032_152414454_152414584_152416734
68772	chr4	-	1229	4	NNC	ENSMUSG00000028840.11	novel	1994	3	NA	NA	-12	1	intron_retention	FALSE	non_canonical	0	0	junction_1	302.973412841604	478	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCAGTGTGCATGTATT	7706	False	NA	NA	False	NA	NA	NA	133972865	133970616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133970888_133971597_133972242_133972335_133972399_133972614
68773	chr17	-	1193	4	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	33	-44	intron_retention	FALSE	canonical	0	0	junction_3	103.009168955433	1	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGACATATTTGAGCT	NA	False	NA	NA	False	NA	NA	NA	79202496	79192369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79192646_79196359_79196517_79200136_79200372_79201971
68774	chr9	+	826	5	NNC	ENSMUSG00000032383.8	novel	892	5	NA	NA	21	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	962.582593858834	4	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCTTGGGTGTGGGCTG	1595	False	NA	NA	False	NA	NA	NA	65967533	65973902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65967683_65968790_65968863_65970270_65970365_65972768_65972954_65973576
68777	chrM	+	642	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	34	906	34	-906	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGCGTATAACAACTCGGA	12	False	NA	-37	True	NA	NA	NA	1127	1769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_1800
68780	chr15	-	838	1	Antisense	novelGene_ENSMUSG00000100599.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCGCACGGCCACGCCCC	NA	False	NA	NA	False	NA	NA	NA	99150750	99149912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_99149900_99150800
68781	chr11	-	1450	3	FSM	ENSMUSG00000018648.16	ENSMUST00000164891.8	1454	3	8	-4	8	0	multi-exon	FALSE	canonical	1	2	junction_2	42	54	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	False	NA	NA	False	NA	NA	NA	83959397	83938866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_83940137_83941657_83941747_83959306
68783	chr17	+	850	3	ISM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	-6	18	-6	-18	intron_retention	FALSE	canonical	3	182	junction_1	11.5	1105	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCGCTGGTGAAGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	25115467	25116478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_25115534_25115601_25115733_25115825
68785	chrX	+	2299	3	NNC	ENSMUSG00000041718.17	novel	1802	4	NA	NA	1663	-24	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	391.5	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACTCTCAACACTTTAA	NA	False	NA	NA	False	NA	NA	NA	143102681	143107122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143102703_143102894_143103058_143105007
68786	chr10	+	1613	3	FSM	ENSMUSG00000112132.2	ENSMUST00000218737.2	1855	3	10	232	10	-232	multi-exon	FALSE	canonical	3	22	junction_1	4.5	44	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTCACCCAGTCTTGC	5704	False	NA	NA	False	NA	NA	NA	53285987	53300136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_53286053_53297604_53297685_53298668
68787	chr4	-	2418	11	ISM	ENSMUSG00000029026.18	ENSMUST00000133533.8	4752	12	15623	2033	3772	226	3prime_fragment	FALSE	canonical	3	9	junction_10	4.31277173056957	10	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTACTTGGTGGGGTCAGC	NA	False	NA	NA	False	NA	NA	NA	154166007	154142742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_154143784_154145044_154145139_154145818_154145958_154146409_154146559_154146968_154147097_154148341_154148431_154148769_154148913_154149094_154149205_154151466_154151583_154152033_154152221_154165785
68788	chr18	+	1236	8	FSM	ENSMUSG00000024610.16	ENSMUST00000050487.16	1224	8	-14	2	-14	-2	multi-exon	FALSE	canonical	3	17	junction_2	5.45108115095397	48	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTCTTGCTTCTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	60936905	60945722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944930_60944994_60945223
68789	chr12	+	854	9	NNC	ENSMUSG00000047454.13	novel	3300	23	NA	NA	45	-179352	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	31.5941054628866	1	20	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACACCAAAAGTAAGTATAG	NA	False	NA	NA	False	NA	NA	NA	78273471	78551515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459196_78501589_78501626_78528077_78528140_78538811_78539044_78540794_78540832_78551390
68793	chr2	+	1391	5	ISM	ENSMUSG00000027296.8	ENSMUST00000028758.8	1818	7	6859	11	6859	-11	intron_retention	FALSE	canonical	3	155	junction_3	10	91	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCTGTGACTCCAGCCT	NA	False	NA	NA	False	NA	NA	NA	119579676	119581733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_119579768_119579842_119580060_119580153_119580359_119580574_119580677_119580957
68794	chr15	-	1141	2	Antisense	novelGene_ENSMUSG00000068391.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACTTGGGAGGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	72965921	72964216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_72964807_72965370
68796	chr13	+	1425	8	NNC	ENSMUSG00000021326.14	novel	4204	8	NA	NA	-56	1	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	272.904408770783	299	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTTTTGTTTTTGTTATG	1166	False	NA	NA	False	NA	NA	NA	21364337	21377034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_21364402_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374261_21374295_21375389_21375417_21376199
68797	chr2	-	1787	5	ISM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	3617	7	3607	-4	3prime_fragment	FALSE	canonical	3	30	junction_4	8.10478253872366	1	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATTTATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	109105018	108922648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733
68798	chr19	-	1053	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	76.6441996065804	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9945	False	NA	NA	False	NA	NA	NA	6969940	6965278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969764_6969853
68800	chrX	+	1429	1	ISM	ENSMUSG00000049929.8	ENSMUST00000060576.8	4238	3	11823	24	11823	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	4	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGTATTTGGATTATTAA	NA	False	NA	NA	False	NA	NA	NA	105976053	105977482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_105976100_105977500
68801	chr11	-	900	1	ISM	ENSMUSG00000018800.15	ENSMUST00000043961.12	8231	39	67406	4	67350	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATGACAGACTTCAGTTT	7029	False	NA	NA	False	NA	NA	NA	110161098	110160198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_110160200_110161100
68804	chr4	+	649	6	Intergenic	novelGene_2041	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	33.2649966180669	110	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	2299	False	NA	NA	False	NA	NA	NA	146289357	146319729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289519_146291416_146291510_146312913_146312972_146316363_146316491_146317966_146318083_146319635
68805	chr8	-	1515	1	Intergenic	novelGene_1780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATCTTTCTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	123294552	123293037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_123293000_123294600
68806	chr17	+	682	6	NNC	ENSMUSG00000024217.11	novel	758	6	NA	NA	-20	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	804.81411518437	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTTTTAGTTAAAGCGT	NA	False	NA	NA	False	NA	NA	NA	28059088	28070926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070646
68807	chr2	+	514	6	ISM	ENSMUSG00000025817.13	ENSMUST00000179748.8	1590	10	219	5106	0	-818	5prime_fragment	FALSE	canonical	3	607	junction_1	52.2203025651901	9	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAACTGGCTACAAAG	1936	False	NA	NA	False	NA	NA	NA	5850063	5868441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389
68808	chr16	+	837	7	ISM	ENSMUSG00000052917.16	ENSMUST00000202000.2	3218	8	-8	2799	-3	55	5prime_fragment	FALSE	canonical	3	17	junction_6	8.60232526704263	52	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTCGTGACTGCTAGAGA	NA	False	NA	NA	False	NA	NA	NA	55895834	55959461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55959347
68809	chr2	+	1270	1	FSM	ENSMUSG00000044628.6	ENSMUST00000114355.2	1333	1	57	6	48	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	48	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTTGCACTTGTTCACT	NA	False	NA	NA	False	NA	NA	NA	25132997	25134267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25133000_25134300
68811	chr11	-	1679	11	NNC	ENSMUSG00000015869.17	novel	1841	10	NA	NA	10	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	267.241183203488	94	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGGGTCTTCAGTCGG	NA	False	NA	NA	False	NA	NA	NA	116381105	116361685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873_116381004_116381081
68812	chr9	+	479	4	NNC	ENSMUSG00000032518.7	novel	1599	6	NA	NA	359	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2399.43914743055	2	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTCTTATGGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	119958230	119960619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119958343_119959183_119959246_119960080_119960232_119960465
68813	chr5	+	609	4	Antisense	novelGene_ENSMUSG00000070493.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGACAAACTGCGAAACGT	1488	False	NA	NA	False	NA	NA	NA	129910095	129916117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_129910236_129911267_129911420_129912773_129913022_129916048
68814	chr5	-	923	9	ISM	ENSMUSG00000010721.16	ENSMUST00000055195.11	4926	17	26	57589	26	-29314	5prime_fragment	FALSE	canonical	3	35	junction_4	8.10863737011343	61	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTGTTACATACTTA	NA	False	NA	NA	False	NA	NA	NA	29583356	29492388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29583124
68815	chr11	+	872	3	NNC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	6842	-189	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2497	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGTGGTATGTCATCT	NA	False	NA	NA	False	NA	NA	NA	52134532	52137496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52134579_52135807_52135949_52136811
68816	chr13	-	729	3	ISM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	20806	-2	20750	2	3prime_fragment	FALSE	canonical	3	331	junction_2	10	2	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACGTGTCAAATGACTG	NA	False	NA	NA	False	NA	NA	NA	104344524	104341629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_104342156_104343606_104343790_104344504
68818	chr19	-	1010	2	ISM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	47	7	47	-7	intron_retention	FALSE	canonical	3	6042	junction_1	0	24	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTCATACTTGGTGTTC	9033	False	NA	NA	False	NA	NA	NA	5416344	5414675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5415187_5415845
68819	chr3	-	1396	5	NNC	ENSMUSG00000038766.17	novel	4552	6	NA	NA	15	-732	intron_retention	FALSE	canonical	1	2	junction_4	10.9857862713599	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCATGCTTCAGGTGTGT	8791	False	NA	NA	False	NA	NA	NA	95125212	95111055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95125172
68820	chr6	+	2049	16	NNC	ENSMUSG00000029802.14	novel	600	5	NA	NA	9930	64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	80.05237174639	1	132	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTACCATATCCAGTGT	NA	False	NA	NA	False	NA	NA	NA	58627496	58669424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_58627529_58632622_58632842_58640598_58640659_58641428_58641544_58642090_58642227_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655336_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
68821	chr7	+	1167	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-32523	4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	114.317266849763	1	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCACTTTTGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	81887570	81956299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81887643_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
68822	chr9	+	1228	9	NNC	ENSMUSG00000053646.14	novel	8649	38	NA	NA	-46	711	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	5.699506557589	1	51	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCCCCACACCCTTCTCC	8370	False	NA	NA	False	NA	NA	NA	108934984	108938690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108935107_108935328_108935423_108935508_108935682_108935827_108935980_108937188_108937295_108937474_108937612_108937866_108938044_108938235_108938370_108938557
68823	chr17	+	579	4	ISM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	401	2	-291	-2	3prime_fragment	FALSE	canonical	3	5482	junction_2	1348.91915580174	2	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTCAGCCTTGGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	28547960	28549999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_28548022_28548347_28548497_28549498_28549672_28549803
68824	chr16	+	1883	1	Intergenic	novelGene_3670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGAAGACACCTAATTTC	NA	False	NA	NA	False	NA	NA	NA	56515527	56517410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_56515500_56517400
68829	chr17	-	1188	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-26	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.8807492274273	145	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATGTATTTTTTAAGAT	NA	False	NA	NA	False	NA	NA	NA	71905776	71895548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71895980_71897482_71897518_71898852_71898943_71905144
68830	chr13	-	1858	1	Intergenic	novelGene_1347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGCCTTGATTGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	38851186	38849328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_38849300_38851200
68832	chr9	-	775	1	FSM	ENSMUSG00000111088.2	ENSMUST00000217460.2	818	1	47	-4	47	4	mono-exon	FALSE	NA	NA	NA	NA	NA	124	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGTATTCATGTGATGT	NA	False	NA	NA	False	NA	NA	NA	44290700	44289925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44289900_44290700
68834	chr15	+	3403	1	ISM	ENSMUSG00000023032.13	ENSMUST00000023776.13	11790	25	57040	1779	4433	-1779	mono-exon	FALSE	NA	NA	NA	NA	NA	6	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACTACTTTAAATTGGGA	NA	False	NA	NA	False	NA	NA	NA	100716667	100720070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_100716700_100720100
68835	chr19	-	756	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	3	-1	3	0	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	187	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8989	False	NA	NA	False	NA	NA	NA	5416388	5414667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5415187_5415845_5415985_5416290
68838	chr4	+	666	4	ISM	ENSMUSG00000011257.20	ENSMUST00000078734.12	2700	14	12934	10	1065	0	3prime_fragment	FALSE	canonical	3	415	junction_3	18.8325958557674	2	5	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCTGAATTTGATGCCA	6091	False	NA	NA	False	NA	NA	NA	123189821	123192615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_123189851_123191471_123191566_123191653_123191887_123192305
68840	chr12	-	1943	1	Intergenic	novelGene_4484	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTACAACTATGTAGTATC	8611	False	NA	NA	False	NA	NA	NA	112921198	112919255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_112919300_112921200
68841	chrX	-	970	2	Antisense	novelGene_ENSMUSG00000084990.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	78	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTAAGAGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	36080790	36078425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36078984_36080378
68842	chr11	-	1017	5	NNC	ENSMUSG00000018761.15	novel	1321	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.956477973765	3	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6819	False	NA	NA	False	NA	NA	NA	69553410	69547522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69548155_69548777_69548848_69549391_69549525_69549636_69549703_69553294
68843	chr1	+	463	2	Antisense	novelGene_ENSMUSG00000084817.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTACTGCCGGAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	45896353	45896898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_45896702_45896783
68845	chr16	-	865	1	Intergenic	novelGene_3653	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTTTACATTTTAATC	NA	False	NA	NA	False	NA	NA	NA	38363075	38362210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_38362200_38363100
68846	chr9	+	1421	12	NNC	ENSMUSG00000093803.6	novel	4016	11	NA	NA	-672	1097	at_least_one_novel_splicesite	TRUE	canonical	3	98	junction_4	34.2887592115034	109	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGGGTGCACAGTCAGG	NA	False	NA	NA	False	NA	NA	NA	124197256	124202493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_124197351_124197648_124197753_124197928_124198032_124198703_124198779_124199151_124199239_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
68848	chr16	-	2164	1	ISM	ENSMUSG00000041205.9	ENSMUST00000040880.9	3280	3	5861	31	5861	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	20	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCACTTTAATCTGTTAA	NA	False	NA	NA	False	NA	NA	NA	20054247	20052083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_20052100_20054200
68849	chrX	-	844	3	FSM	ENSMUSG00000051159.17	ENSMUST00000134887.8	607	3	95	-332	-76	-1	multi-exon	FALSE	canonical	3	12	junction_2	97.5	27	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGCCTGGGTGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	101294457	101290987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101291615_101292168_101292294_101294365
68850	chr2	+	1637	14	NNC	ENSMUSG00000014353.16	novel	2100	19	NA	NA	6086	-69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.6113646287301	1	83	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTGTAGCTGGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	128666389	128693590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128666450_128668213_128668309_128672394_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128682651_128682725_128683156_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688761_128693203
68853	chr15	+	1097	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	-43	0	-3	0	multi-exon	FALSE	canonical	3	776	junction_4	74.7677886674618	2916	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59246092	59473533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
68854	chr8	+	998	7	ISM	ENSMUSG00000024266.9	ENSMUST00000098361.4	1926	10	1436	770	1436	-770	internal_fragment	FALSE	canonical	3	28	junction_4	4.45034330760623	4	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCGGACGTGTGAAGACT	5717	False	NA	NA	False	NA	NA	NA	120340921	120342893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671
68855	chr8	+	425	2	ISM	ENSMUSG00000024266.9	ENSMUST00000098361.4	1926	10	3654	15	3654	-15	3prime_fragment	FALSE	canonical	3	45	junction_1	0	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGAAATTGTCTCTAGTG	7935	False	NA	NA	False	NA	NA	NA	120343139	120343648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_120343269_120343352
68856	chr9	-	778	3	NNC	ENSMUSG00000019471.11	novel	7851	8	NA	NA	-11	1516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	895.5	214	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAGGCCGCTGGTTCAG	NA	False	NA	NA	False	NA	NA	NA	21061249	21050732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21051088_21054296_21054522_21061051
68859	chr1	+	1274	8	ISM	ENSMUSG00000070645.6	ENSMUST00000094556.3	1592	9	3618	29	2219	-29	3prime_fragment	FALSE	canonical	3	5	junction_4	1.51185789203691	28	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGAATAAAGATTTCATGTT	9624	False	NA	NA	False	NA	NA	NA	133281865	133288034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_133282016_133282539_133282664_133283232_133283352_133284122_133284320_133286141_133286262_133286675_133286821_133287071_133287171_133287714
68861	chr16	+	486	1	NIC	ENSMUSG00000075122.6	novel	3173	7	NA	NA	19951	-6893	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATAGGCAGGCCTAAGAA	NA	False	NA	NA	False	NA	NA	NA	38299430	38299916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38299400_38299900
68863	chr14	-	508	3	Genic_Genomic	ENSMUSG00000062611.5	novel	792	1	NA	NA	-9	33	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCTATTTGTGATCGTTA	NA	False	NA	NA	False	NA	NA	NA	88361253	88360419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_88360542_88360779_88361056_88361143
68864	chr17	-	1341	1	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTAGGTTAACCAGCAG	NA	False	NA	NA	False	NA	NA	NA	5321185	5319844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_5319800_5321200
68865	chr2	+	1374	7	NNC	ENSMUSG00000026817.15	novel	2034	6	NA	NA	-7	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	124.303392284094	46	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTATTTCAGTTATAAGAA	NA	False	NA	NA	False	NA	NA	NA	32519525	32525053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652_32523848_32524486
68866	chr4	+	809	3	FSM	ENSMUSG00000034610.15	ENSMUST00000128042.2	587	3	0	-222	0	-139	multi-exon	FALSE	canonical	3	135	junction_2	13.5	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAATTACAACATAAA	NA	False	NA	NA	False	NA	NA	NA	108412932	108416473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108413027_108414518_108414672_108415911
68867	chr13	-	895	7	ISM	ENSMUSG00000047117.14	ENSMUST00000239137.2	3003	14	25017	8338	-126	-6945	internal_fragment	FALSE	canonical	0	0	junction_1	3.0368111930481	6	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTCGTGGATATGCTGAT	NA	False	NA	NA	False	NA	NA	NA	96582651	96561291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_96561337_96566293_96566393_96569809_96569909_96572380_96572480_96578064_96578164_96580786_96580886_96582296
68869	chr8	-	2311	1	ISM	ENSMUSG00000038894.8	ENSMUST00000040514.8	6323	2	21463	4	21463	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	12	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATACAGATTGGAGGACA	NA	False	NA	NA	False	NA	NA	NA	11036995	11034684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_11034700_11037000
68870	chr18	-	351	1	Intergenic	novelGene_4550	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCTGGCCTGCCTGCC	7315	False	NA	NA	False	NA	NA	NA	60622788	60622437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_60622400_60622800
68871	chr7	-	1778	2	FSM	ENSMUSG00000043290.7	ENSMUST00000062428.5	2153	2	58	317	58	-317	multi-exon	FALSE	canonical	1	1	junction_1	0	9	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCTATTAAAAGACTTTC	NA	False	NA	NA	False	NA	NA	NA	5041387	5037754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_5039479_5041333
68872	chr19	-	1062	1	Intergenic	novelGene_1297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAAACAGTGTCTGTGTA	NA	False	NA	-10	True	NA	NA	NA	59285586	59284524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_59284500_59285600
68873	chr10	+	2724	8	NNC	ENSMUSG00000020183.12	novel	5195	9	NA	NA	220	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.49079939630896	6	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCTACAGACCTTTCCAG	NA	False	NA	NA	False	NA	NA	NA	117465624	117520813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_117465793_117495676_117495771_117503853_117504027_117506071_117506257_117507500_117507672_117511844_117511998_117515867_117516017_117519182
68877	chr11	-	932	5	NNC	ENSMUSG00000015837.16	novel	1266	7	NA	NA	80	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	360.666310458851	5	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCTGTGATCCGTACG	NA	False	NA	NA	False	NA	NA	NA	50098066	50090981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50091372_50091436_50091696_50093739_50093862_50096849_50096931_50097986
68879	ERCC-00042	+	1007	1	FSM	ERCC-00042A	DQ516783	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	153	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00042_+_0_1000
68880	chr2	+	622	3	FSM	ENSMUSG00000027176.9	ENSMUST00000122900.2	2589	3	-10	1977	-1	0	multi-exon	FALSE	canonical	3	327	junction_1	20.5	590	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGCTTTAGCCTTTT	6899	False	NA	NA	False	NA	NA	NA	104420866	104439774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_104421048_104439215_104439318_104439435
68881	chr7	+	801	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	17	10	17	-6	multi-exon	FALSE	canonical	3	203	junction_2	55.5	1630	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACATTCATGTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	64042409	64061863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_64042592_64049916_64050255_64061582
68882	chr5	-	1201	9	NNC	ENSMUSG00000043410.17	novel	1440	10	NA	NA	921	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	4.69041575982343	10	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATTGATGAGGTAGTAA	NA	False	NA	NA	False	NA	NA	NA	107072797	107049947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_107050013_107052091_107052225_107052611_107052683_107058937_107058986_107059269_107059533_107065189_107065494_107068828_107068943_107070674_107070777_107072696
68884	chr19	+	1306	7	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46155	-73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	48.9605850546017	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACCTTTTATCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	46807943	46866728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46808062_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46865646_46865832_46866271
68886	chr6	-	2237	3	ISM	ENSMUSG00000015112.16	ENSMUST00000015256.15	3067	18	-11	137847	-11	-47597	5prime_fragment	FALSE	canonical	3	691	junction_2	1	7	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTGTAGCAGCTCTTTT	9	True	NA	NA	False	NA	NA	NA	6217129	6179064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_6181114_6191263_6191318_6216995
68887	chr11	-	946	1	Intergenic	novelGene_2443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGCAATATTGAAATATCA	NA	False	NA	NA	False	NA	NA	NA	87946957	87946011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_87946000_87947000
68888	chr7	+	947	7	FSM	ENSMUSG00000078765.12	ENSMUST00000165773.8	874	7	47	-120	-4	0	multi-exon	FALSE	canonical	3	472	junction_4	66.6524984944717	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	NA	False	NA	NA	NA	30262813	30264789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
68889	chr17	+	689	5	Antisense	novelGene_ENSMUSG00000036315.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCCGGAGGGCTAGAGCG	NA	False	NA	NA	False	NA	NA	NA	37265247	37269436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_37265443_37268455_37268568_37268723_37268825_37269040_37269239_37269353
68890	chr2	-	668	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	-24	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1033.42352764972	19	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCTTTTTTAATATATAA	NA	False	NA	NA	False	NA	NA	NA	91762068	91760165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91760406_91761162_91761325_91761440_91761600_91761716_91761794_91762038
68892	chr6	+	982	1	ISM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	5144	171	2727	-171	mono-exon	FALSE	NA	NA	NA	NA	NA	37	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTTTTTCCTGTGGAAG	NA	False	NA	NA	False	NA	NA	NA	108642733	108643715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_108642700_108643700
68895	chr8	+	1857	9	NNC	ENSMUSG00000031728.11	novel	2127	9	NA	NA	-12	-5	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	8.34322329798262	26	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCCCCTGGCTCCCTTGT	NA	False	NA	NA	False	NA	NA	NA	110432165	110451559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_110432197_110432988_110433052_110434660_110434777_110436042_110436160_110444393_110444539_110447826_110447976_110448385_110448491_110449518_110449686_110450595
68896	chr2	-	2634	2	Antisense	novelGene_ENSMUSG00000070544.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	80	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCTCTTTTGTATTTAG	NA	False	NA	NA	False	NA	NA	NA	160496891	160490575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_160492939_160496620
68898	chr7	-	1278	12	NNC	ENSMUSG00000030846.16	novel	1580	12	NA	NA	49	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	83.6643233897488	1	60	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTTTTCTTTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	128062884	128044053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_128044341_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046618_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
68899	ERCC-00003	+	1007	1	FSM	ERCC-00003A	DQ516784	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	353	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00003_+_0_1000
68900	chr7	+	869	1	Intergenic	novelGene_2953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACGGTGTCTATCTACT	308	False	NA	NA	False	NA	NA	NA	43078367	43079236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_43078400_43079200
68901	chr18	+	1681	1	FSM	ENSMUSG00000110185.3	ENSMUST00000210490.3	2839	1	104	1054	104	-1054	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAACCAACAAATGTTA	NA	False	NA	NA	False	NA	NA	NA	36431835	36433516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36431800_36433500
68902	chr18	+	837	1	FSM	ENSMUSG00000110185.3	ENSMUST00000210490.3	2839	1	1991	11	1991	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	18	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTACATAAACAGATCATC	NA	False	NA	NA	False	NA	NA	NA	36433722	36434559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36433700_36434600
68904	chr15	+	1113	4	FSM	ENSMUSG00000063236.7	ENSMUST00000230274.2	1111	4	-15	13	1	-13	multi-exon	FALSE	canonical	1	74	junction_1	105.909814884594	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTTCTAAGGAAATAGG	NA	False	NA	NA	False	NA	NA	NA	76832706	76834916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76833120_76833267_76833353_76833743_76833891_76834448
68905	chr8	-	554	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212686.2	554	4	5	-5	5	4	multi-exon	FALSE	canonical	3	157	junction_3	46.7784375778224	863	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAAGGCTGTGTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	106663665	106662362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497
68906	chr5	+	2024	6	NNC	ENSMUSG00000041827.16	novel	2181	6	NA	NA	-13	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	8.35224520712844	1	90	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATGAGTGGTCCTCATT	8003	False	NA	NA	False	NA	NA	NA	115061467	115075968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115061669_115066081_115066365_115067898_115068063_115070781_115071024_115073979_115074122_115074976
68907	chr19	+	1161	3	NNC	ENSMUSG00000024925.12	novel	771	3	NA	NA	-18	-53	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	155	8	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGATCCTTTTTTTATT	5027	False	NA	NA	False	NA	NA	NA	5651882	5656994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5652109_5652220_5652440_5656278
68910	chr6	+	1316	6	FSM	ENSMUSG00000047115.16	ENSMUST00000121903.2	1304	6	-17	5	-17	2	multi-exon	FALSE	canonical	3	8	junction_5	14.4360659460949	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATACATAGGGTCAGAT	NA	False	NA	NA	False	NA	NA	NA	49344739	49366209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49365750
68911	chr11	+	1313	6	Antisense	novelGene_ENSMUSG00000034449.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCACTGCAGTGGGGGA	NA	False	NA	NA	False	NA	NA	NA	84711689	84719811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_84712295_84712490_84712584_84713136_84713271_84713900_84713991_84716191_84716350_84719578
68912	chr7	+	1007	6	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5554	-4	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_4	10.0598210719674	10	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAAAGGTTGGCTCCTT	772	False	NA	NA	False	NA	NA	NA	24471076	24484073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24471221_24473674_24473740_24474864_24474981_24477550_24477687_24480294_24480655_24483887
68913	chr1	+	1310	1	Intergenic	novelGene_463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATTATCTTTTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	143535836	143537146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_143535800_143537100
68914	chr13	-	776	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	286.892292507136	1135	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCCTTCGTATTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	108295159	108189124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_108189489_108202727_108202826_108217886_108217928_108228067_108228158_108294976
68915	chr9	-	1028	2	FSM	ENSMUSG00000042106.6	ENSMUST00000048568.6	1025	2	-11	8	-11	-8	multi-exon	FALSE	canonical	3	12	junction_1	0	35	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTAAACTGCTGGTCCCA	9745	False	NA	NA	False	NA	NA	NA	107863089	107861429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107862264_107862895
68916	chr2	-	248	1	Antisense	novelGene_ENSMUSG00000082399.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCCGGAGACCGGAAGAGAA	NA	False	NA	NA	False	NA	NA	NA	134646084	134645836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_134645800_134646100
68917	chr13	+	1670	1	Intergenic	novelGene_1362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGGAGTGAGTTGGTGTA	NA	False	NA	NA	False	NA	NA	NA	49073218	49074888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_49073200_49074900
68918	chr2	+	2833	1	Intergenic	novelGene_2776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	101	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCAGATGTGGGTGATAC	7719	False	NA	NA	False	NA	NA	NA	165991094	165993927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_165991100_165993900
68919	chr9	-	729	6	ISM	ENSMUSG00000041361.14	ENSMUST00000169573.8	1393	12	-91	50568	4	5412	5prime_fragment	FALSE	canonical	1	2	junction_1	0.4	1	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGCTGCTCAGATGGAA	NA	False	NA	NA	False	NA	NA	NA	71499638	71462907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_71463020_71466129_71466244_71468236_71468330_71471691_71471848_71486892_71486980_71499471
68920	chr9	-	1052	3	ISM	ENSMUSG00000041361.14	ENSMUST00000163708.2	5503	12	67511	0	55036	0	3prime_fragment	FALSE	canonical	0	0	junction_2	0.5	4	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTAGTGTCTCTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	71432131	71411628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_71412512_71422350_71422452_71432063
68924	chrUn_MU069435v1	+	494	2	Intergenic	novelGene_4777	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_1	0	643	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCCAGCTATTTATTTC	NA	False	NA	NA	False	NA	NA	NA	14904	22059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_15016_21676
68925	chr17	-	997	3	ISM	ENSMUSG00000049760.7	ENSMUST00000233299.2	788	4	18	80	18	33	intron_retention	FALSE	canonical	3	2068	junction_2	27	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTCAAGACCAGGATGGCA	NA	False	NA	NA	False	NA	NA	NA	56916662	56914716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_56914842_56915637_56915693_56915845
68926	chr14	+	1495	1	NIC	ENSMUSG00000022125.8	novel	2445	4	NA	NA	1047	975	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTGTTAACTCAAAATTCA	NA	False	NA	NA	False	NA	NA	NA	103310212	103311707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_103310200_103311700
68927	chr3	-	598	2	NNC	ENSMUSG00000097639.3	novel	2161	2	NA	NA	0	-1442	at_least_one_novel_splicesite	FALSE	canonical	3	175	junction_1	0	1130	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCCTAGGACTCTTAACT	NA	False	NA	NA	False	NA	NA	NA	41447625	41439900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_41440396_41447522
68931	chr11	-	992	7	FSM	ENSMUSG00000000301.17	ENSMUST00000102693.9	961	7	-34	3	-26	-3	multi-exon	FALSE	canonical	3	19	junction_6	8.67307455417179	159	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTCTCTGGTCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	59937341	59861442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937165
68932	chr12	+	815	3	NNC	ENSMUSG00000021102.5	novel	2925	2	NA	NA	-48	117	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	325.5	88	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTGTGTGAGTCATTAAA	6310	False	NA	NA	False	NA	NA	NA	104998898	105007115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_104998960_104999069_104999242_105006533
68934	chr7	+	405	1	Intergenic	novelGene_2927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAGACTTCATAATGGCAA	NA	False	NA	NA	False	NA	NA	NA	34245727	34246132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_34245700_34246100
68936	chr4	+	1389	4	NNC	ENSMUSG00000048351.15	novel	341	4	NA	NA	6	49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	221.136961079679	857	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATTGCTTGCAAATACTC	NA	False	NA	NA	False	NA	NA	NA	108185342	108198790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108185488_108189407_108189549_108195319_108196036_108198403
68937	chr7	-	1489	6	NNC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	0	206	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	51.9368847737328	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGTTGCGTGTACAGGC	NA	False	NA	NA	False	NA	NA	NA	25418480	25412153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_25412539_25412861_25412975_25413777_25413908_25414175_25414446_25415159_25415613_25418342
68938	chr8	+	1171	3	NIC	ENSMUSG00000005699.17	novel	1234	3	NA	NA	7	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	9.5	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGATGTGGTCCTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	106427792	106430123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106427950_106428805_106428939_106429242
68939	chr8	-	1666	11	Antisense	novelGene_ENSMUSG00000044433.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCGCCCGGGTCCGCGCGC	4973	False	NA	NA	False	NA	NA	NA	3654062	3637794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3637954_3647836_3648094_3648683_3648809_3648892_3648987_3650673_3650813_3651963_3652104_3652183_3652279_3652369_3652422_3652549_3652626_3653429_3653500_3653603
68940	chr4	+	668	1	Antisense	novelGene_ENSMUSG00000028833.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCTCCAGGCTGCTAC	NA	False	NA	NA	False	NA	NA	NA	126646534	126647202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_126646500_126647200
68942	chr7	-	1739	1	ISM	ENSMUSG00000051314.12	ENSMUST00000053156.10	2301	3	3660	29	862	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	1	68	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAGATTATGAAAGTC	6921	False	NA	NA	False	NA	NA	NA	30519540	30517801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30517800_30519500
68943	chrX	+	1141	2	ISM	ENSMUSG00000043384.16	ENSMUST00000149595.8	837	6	1786	12251	1784	-12251	internal_fragment	FALSE	canonical	3	51	junction_1	0	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTGCAGCTCCTGATAT	NA	False	NA	NA	False	NA	NA	NA	134645267	134650488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_134645325_134649404
68944	chr16	-	1849	1	Intergenic	novelGene_3865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTGGGAGAGTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	93648815	93646966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_93647000_93648800
68945	chr12	-	1973	2	Intergenic	novelGene_4401	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	72	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACCACCCGGCTTGCCT	NA	False	NA	NA	False	NA	NA	NA	72256465	72248136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_72249699_72256054
68946	chr2	+	1060	4	FSM	ENSMUSG00000068205.15	ENSMUST00000043836.8	3552	4	27	2465	2	-6	multi-exon	FALSE	canonical	3	66	junction_3	7.40870359029762	109	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTATGATTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	140237381	140262409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
68948	chr9	+	1062	6	ISM	ENSMUSG00000039115.14	ENSMUST00000124360.8	1935	14	139041	5	11070	-5	3prime_fragment	FALSE	canonical	2	4	junction_1	0.894427190999916	1	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCTATTAAATAGTTCT	NA	False	NA	NA	False	NA	NA	NA	118679765	118726786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_118679875_118698358_118698485_118700888_118701009_118706189_118706292_118716831_118716952_118726301
68949	chr11	+	557	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	1	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6163.94327034245	7	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97917783	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920279_97920682_97920712_97921096
68950	chr11	-	2001	6	ISM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	15	6040	15	-6033	5prime_fragment	FALSE	canonical	3	12	junction_4	19.1520233917986	7	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATTCATATTTTTAGCG	NA	False	NA	NA	False	NA	NA	NA	72252684	72241587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_72242877_72245524_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
68952	chr2	-	1059	4	NNC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	133.697004038568	11	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAACCACAGCCTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	152673620	152622592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152622680_152624004_152624203_152671346_152672023_152673522
68953	chr11	-	845	4	ISM	ENSMUSG00000059796.17	ENSMUST00000102589.12	813	7	108	1165	0	-484	5prime_fragment	FALSE	canonical	3	9657	junction_3	2058.7182096311	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGGCACATAAAATCCTGA	NA	False	NA	NA	False	NA	NA	NA	69563141	69560472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69561099_69561440_69561574_69561753_69561803_69563104
68954	chr18	+	1261	8	NNC	ENSMUSG00000024381.17	novel	2406	19	NA	NA	7396	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.1856389212206	65	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGGCGTGTCTTTCTTTGC	NA	False	NA	NA	False	NA	NA	NA	32548082	32568793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32548132_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32565035_32565147_32565376_32565479_32568187
68955	chr7	+	526	3	Antisense	novelGene_ENSMUSG00000042462.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCGCCTCCAGAGTTCT	8239	False	NA	NA	False	NA	NA	NA	126856152	126859843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126856427_126858537_126858641_126859694
68956	chr8	+	1497	3	FSM	ENSMUSG00000074136.10	ENSMUST00000132616.2	490	3	-960	-47	-960	16	multi-exon	FALSE	canonical	2	3	junction_2	1.5	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTGAAGGTGAGAG	NA	False	NA	NA	False	NA	NA	NA	96534700	96548372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_96535809_96536858_96536926_96548050
68957	chr2	-	1220	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	-10	1	-3	0	multi-exon	FALSE	canonical	3	84	junction_6	10.321366781822	291	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGCTTCCACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	127286480	127278135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
68962	chr17	+	880	5	NNC	ENSMUSG00000023873.14	novel	1769	10	NA	NA	3843	-4116	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3.53553390593274	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGAGCTTATTGCTGCAG	NA	False	NA	NA	False	NA	NA	NA	9211057	9219979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_9211585_9212427_9212551_9214029_9214090_9215810_9215961_9219959
68964	chr5	+	310	1	Intergenic	novelGene_796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTAGTTTTAGTTTG	NA	False	NA	NA	False	NA	NA	NA	108259699	108260009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_108259700_108260000
68965	chr16	-	1011	1	Intergenic	novelGene_3599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGCCATGATGACTGGA	6436	False	NA	NA	False	NA	NA	NA	17282129	17281118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_17281100_17282100
68966	chr3	-	2267	1	Intergenic	novelGene_3194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTGTTCACGATGCTCA	NA	False	NA	NA	False	NA	NA	NA	145604709	145602442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_145602400_145604700
68968	chr2	+	1140	1	ISM	ENSMUSG00000026676.8	ENSMUST00000027988.8	2670	3	91939	24	91939	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGCTGTGGAAAAAAAGAA	4468	False	NA	NA	False	NA	NA	NA	5234525	5235665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_5234500_5235700
68970	chr16	-	899	3	Antisense	novelGene_ENSMUSG00000054604.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCAGAGCAACGGGATGAA	NA	False	NA	NA	False	NA	NA	NA	64676489	64672505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_64672598_64673159_64673386_64675908
68972	chr7	+	1106	1	NIC	ENSMUSG00000046027.18	novel	2483	6	NA	NA	5051	634	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAGATGCTGAGACCTGC	NA	False	NA	NA	False	NA	NA	NA	83286811	83287917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_83286800_83287900
68973	chr15	+	478	5	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	-107	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4685.41217503861	2	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGTCTCATTGCTGCCCG	NA	False	NA	NA	False	NA	NA	NA	76788284	76790407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788645_76789128_76789237_76790055_76790172_76790320
68974	chr5	+	1421	7	NNC	ENSMUSG00000053856.8	novel	1565	6	NA	NA	22	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	8.91471941354422	2	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAATTCCAGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	31265684	31269863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31265766_31266230_31266347_31266838_31267053_31267521_31267664_31268456_31268524_31268947_31269098_31269212
68977	chr6	+	1576	1	ISM	ENSMUSG00000072653.15	ENSMUST00000130490.10	4419	6	7941	1862	4441	-466	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTAATCCTCCGCTGCA	7435	False	NA	NA	False	NA	NA	NA	47928045	47929621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_47928000_47929600
68980	chr7	-	1166	7	NNC	ENSMUSG00000003271.18	novel	1193	7	NA	NA	-7174	-14	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	2.80871659105879	70	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCCTCACAATAAACTTAT	7662	False	NA	NA	False	NA	NA	NA	45399344	45379437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477_45391621_45399119
68981	chr17	-	2482	1	NIC	ENSMUSG00000097047.3	novel	853	2	NA	NA	-36	-11	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAACATAACTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	85264887	85262405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_85262400_85264900
68982	chr12	-	1571	1	NIC	ENSMUSG00000035247.17	novel	8988	43	NA	NA	-15411	-16415	mono-exon	FALSE	NA	NA	NA	NA	NA	1	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCAAATGGATTTGTTAT	7000	False	NA	NA	False	NA	NA	NA	51844775	51843204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_51843200_51844800
68984	chr4	+	2385	3	ISM	ENSMUSG00000070619.6	ENSMUST00000094526.5	2094	4	-16	3	-16	-3	intron_retention	FALSE	canonical	2	4	junction_1	3	2	100	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAATACCACACCTTTT	NA	False	NA	NA	False	NA	NA	NA	144084495	144090986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_144084551_144088178_144088493_144088970
68985	chr13	-	1007	6	ISM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	-17	2443	-4	-143	5prime_fragment	FALSE	canonical	3	24	junction_1	7.78716893357271	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTACAGGGCTGGAGGTG	2353	False	NA	NA	False	NA	NA	NA	81781277	81729602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
68986	chr8	+	1521	9	Antisense	novelGene_ENSMUSG00000034416.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAAAGCTAGGTAGGCTG	NA	False	NA	NA	False	NA	NA	NA	117722214	117743725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_117722580_117724274_117724405_117724812_117724917_117726511_117726725_117736309_117736468_117738235_117738361_117740598_117740736_117741600_117741720_117743555
68987	chr5	-	851	6	NNC	ENSMUSG00000029655.18	novel	8982	6	NA	NA	4	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	122.015736689986	1	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCCTCACAAGGTGTTT	9566	False	NA	NA	False	NA	NA	NA	150584948	150566487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_150566781_150570465_150570543_150570924_150571014_150573338_150573401_150574079_150574205_150584743
68988	chr12	-	1152	4	ISM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	20	5927	0	642	5prime_fragment	FALSE	canonical	2	86	junction_3	16.1107279647928	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAAAGACAGAGTTTAT	9080	False	NA	NA	False	NA	NA	NA	31704805	31695975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_31696738_31698764_31698887_31702289_31702441_31704688
68989	chr8	+	1173	5	ISM	ENSMUSG00000054823.18	ENSMUST00000155861.8	2834	10	61270	-1	-11565	1	3prime_fragment	FALSE	canonical	3	19	junction_4	32.797675222491	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTAGTGCCGTTGTCATG	NA	False	NA	NA	False	NA	NA	NA	26152886	26167231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26166718
68990	chr19	+	1130	7	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-10	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	14.4067885233162	226	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAAGAAAGTCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	6973488	6976387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976256
68991	chr16	-	740	5	NNC	ENSMUSG00000022706.17	novel	778	4	NA	NA	-8	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	896.135418059123	22	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGTCTTTTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	18695297	18690968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18691209_18691261_18691413_18692286_18692446_18694073_18694187_18695220
68992	chr3	+	1738	9	Fusion	ENSMUSG00000056411.3_ENSMUSG00000009108.16	novel	2518	7	NA	NA	775	-11	multi-exon	FALSE	canonical	2	2	junction_7	1.61535599791501	20	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAAACCTGCCCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	107994066	108008596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_107994208_108000509_108000683_108002456_108002500_108002754_108002897_108003665_108003824_108005282_108005412_108005626_108005757_108007303_108007458_108007928
68993	chr3	+	1088	8	FSM	ENSMUSG00000027935.15	ENSMUST00000065418.7	1107	8	21	-2	21	2	multi-exon	FALSE	canonical	3	20	junction_1	3.88613443106727	136	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCATTTGCATTACTTT	NA	False	NA	NA	False	NA	NA	NA	90128114	90133278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90128330_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
68994	chr9	-	1444	4	Fusion	ENSMUSG00000098161.2_ENSMUSG00000103968.2	novel	388	4	NA	NA	-1030	5347	multi-exon	FALSE	non_canonical	0	0	junction_1	15.084944665313	1	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCCAGGCATGATGGT	NA	False	NA	NA	False	NA	NA	NA	118233400	118226185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_118227452_118227714_118227768_118232126_118232223_118233371
68995	chr4	-	760	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	22	0	-5	0	multi-exon	FALSE	canonical	3	19	junction_2	76	378	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	9	True	NA	NA	False	NA	NA	NA	34778342	34768663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_34769148_34771257_34771415_34778223
68998	chrX	-	531	2	FSM	ENSMUSG00000063018.7	ENSMUST00000128571.2	540	2	9	0	9	0	multi-exon	FALSE	canonical	3	121	junction_1	0	780	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	NA	False	NA	NA	NA	7289218	7278341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7278772_7289117
69000	chr12	-	555	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221422.2	861	3	291	15	-36	-3	multi-exon	FALSE	canonical	3	1653	junction_2	166	555	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAAGAATTTAAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	101942222	101934363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_101934470_101935751_101935897_101941918
69001	chr17	-	1045	2	Intergenic	novelGene_274	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	75	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTCTCTCCTCACATTC	NA	False	NA	NA	False	NA	NA	NA	64843366	64841705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_64841800_64842415
69002	chr10	-	862	1	Genic_Genomic	ENSMUSG00000003923.15	novel	NA	NA	NA	NA	8999	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTTTTTTTTTTTTTTA	7686	False	NA	NA	False	NA	NA	NA	71062152	71061290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_71061300_71062200
69003	chr1	-	737	3	NNC	ENSMUSG00000099343.2	novel	633	2	NA	NA	15165	-186	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	1.5	71	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTACTTTGGCTGCAAAC	NA	False	NA	NA	False	NA	NA	NA	21326652	21320768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_21321037_21324392_21324598_21326388
69004	chr6	+	1525	11	NNC	ENSMUSG00000029798.12	novel	4767	23	NA	NA	27040	-1551	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	5.18555686498567	34	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTCTGTAAAACATTTGC	5036	False	NA	NA	False	NA	NA	NA	57614850	57640066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_57614910_57623111_57623217_57624049_57624158_57629016_57629155_57631373_57631518_57634993_57635161_57636660_57636725_57637075_57637147_57639050_57639235_57639327_57639431_57639684
69008	chr5	-	1468	2	FSM	ENSMUSG00000004415.16	ENSMUST00000141744.2	839	2	360	-989	360	-7	multi-exon	FALSE	canonical	3	47	junction_1	0	41	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGGTCTTTCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	136773043	136770619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_136772061_136773016
69009	chr10	-	659	3	FSM	ENSMUSG00000001666.9	ENSMUST00000001716.8	649	3	-7	-3	-7	0	multi-exon	FALSE	canonical	3	462	junction_2	12	3562	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTCTTTGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	75609255	75607063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75607341_75608571_75608748_75609049
69010	chr17	-	732	7	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	10	-8	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	363.746554011932	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCCCCAATAAATCCTCT	9262	False	NA	NA	False	NA	NA	NA	27158533	27156976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290_27158343_27158424
69011	chr7	+	811	4	ISM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	13792	6720	-89	2622	internal_fragment	FALSE	canonical	3	724	junction_3	16.391054470859	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTGCCCTAGCC	NA	False	NA	NA	False	NA	NA	NA	63848920	63854455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_63849107_63851634_63851849_63852753_63852879_63854169
69012	chr8	+	580	5	NNC	ENSMUSG00000031839.8	novel	638	5	NA	NA	14	-90	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	867.37978273649	5351	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATAAGATTGTCAAACGT	NA	False	NA	NA	False	NA	NA	NA	120071240	120074992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120071360_120071674_120071742_120072351_120072473_120072573_120072629_120074774
69013	chr14	+	514	3	ISM	ENSMUSG00000040618.8	ENSMUST00000226770.2	2417	9	-49	5173	-32	434	5prime_fragment	FALSE	canonical	3	1574	junction_1	29	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTGGGCAACTGGATGT	8982	False	NA	NA	False	NA	NA	NA	55777813	55781156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_55777971_55779862_55780109_55781045
69014	chr1	+	1262	5	ISM	ENSMUSG00000048865.17	ENSMUST00000056449.9	4494	12	14223	4690	14178	-4690	internal_fragment	FALSE	canonical	3	17	junction_3	4.43705983732471	7	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACCACATGGTGGCTCAC	868	False	NA	NA	False	NA	NA	NA	171230744	171233118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_171230909_171231348_171231524_171231601_171231706_171231788_171231867_171232377
69018	chr11	+	786	5	FSM	ENSMUSG00000018858.16	ENSMUST00000106539.10	2522	5	8	1728	-5	15	multi-exon	FALSE	canonical	3	79	junction_2	428.298377302553	4	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTTGCACAGGGCTCTT	NA	False	NA	NA	False	NA	NA	NA	115294587	115301760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115294787_115297376_115297414_115300885_115300969_115301057_115301228_115301463
69019	chr8	-	1927	7	ISM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	-31	12749	-14	-3663	5prime_fragment	FALSE	canonical	3	173	junction_1	17.6580167503476	8	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCATATATAGACTCACT	NA	False	NA	NA	False	NA	NA	NA	23143465	23130890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
69020	chr9	+	805	3	Antisense	novelGene_ENSMUSG00000098646.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTCACCCAGGAGACGCT	6677	False	NA	NA	False	NA	NA	NA	22024287	22028434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_22024975_22025102_22025198_22028411
69021	chr9	+	1089	6	NNC	ENSMUSG00000032478.15	novel	599	6	NA	NA	-9	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	302.549169557611	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTCCGAATGCTCCA	NA	False	NA	NA	False	NA	NA	NA	109661865	109672011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109661955_109662263_109662368_109664334_109664483_109668675_109668803_109671026_109671156_109671519
69022	chr10	+	750	1	ISM	ENSMUSG00000054027.9	ENSMUST00000099396.3	5952	14	55354	3281	9256	1101	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATTGCAAATGCCACGAA	NA	False	NA	NA	False	NA	NA	NA	86670222	86670972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_86670200_86671000
69023	chr11	-	1922	1	NIC	ENSMUSG00000018659.13	novel	1994	7	NA	NA	6	-2528	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	66	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	96834778	96832856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96832900_96834800
69024	chr4	+	2676	1	Intergenic	novelGene_1947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAAACAGCTGAGGCC	NA	False	NA	NA	False	NA	NA	NA	125439457	125442133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_125439500_125442100
69025	chr4	-	1189	7	Antisense	novelGene_ENSMUSG00000006392.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	335	21	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGCGCAACCACTTCCC	NA	False	NA	NA	False	NA	NA	NA	118272305	118266566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_118266575_118268074_118268198_118268848_118269048_118269546_118269688_118269858_118269941_118270821_118271071_118271918
69027	chr6	+	963	8	FSM	ENSMUSG00000029864.8	ENSMUST00000031897.8	930	8	-36	3	-36	-3	multi-exon	FALSE	canonical	3	11	junction_5	4.42165358301205	113	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAGACAAAGCATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	42222832	42227372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_42223028_42223483_42223566_42223744_42223874_42224417_42224519_42224667_42224704_42226312_42226430_42226772_42226867_42227163
69028	chr4	+	1015	1	Intergenic	novelGene_2022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTATGTCCTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	145323152	145324167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_145323200_145324200
69029	chr16	+	957	6	NNC	ENSMUSG00000022792.17	novel	1574	5	NA	NA	-26	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	140.435892847947	73	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAATTGTAGTTCATTTC	NA	False	NA	NA	False	NA	NA	NA	16121390	16127481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_16121463_16121507_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
69030	chr11	+	1205	6	NNC	ENSMUSG00000018411.18	novel	779	5	NA	NA	-8169	29	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_3	222.439744650096	4	45	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAAATTTCCTTGGGCA	9687	False	NA	NA	False	NA	NA	NA	104200689	104219290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_104200848_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
69031	chr17	+	715	6	NNC	ENSMUSG00000024217.11	novel	758	6	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	810.279852890346	11	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGTCCCTGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	28059072	28070939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064223_28066933_28067032_28070611
69032	chr5	+	935	7	FSM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	78	11	40	-2	multi-exon	FALSE	canonical	3	30	junction_5	922.805580222015	1	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATCACCACCATGTTGT	4679	False	NA	NA	False	NA	NA	NA	29941070	29962956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29961231_29961337_29962545
69033	chr2	+	1102	1	ISM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	43554	10	43485	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAATCATTGTTTTGAGTG	1508	False	NA	NA	False	NA	NA	NA	3328802	3329904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_3328800_3329900
69034	chr2	-	1452	8	NIC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	54	-24	combination_of_known_splicesites	FALSE	canonical	2	5	junction_7	86.3554590406562	3	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAGATGATATTTCTT	NA	False	NA	NA	False	NA	NA	NA	128785943	128768211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128785767
69036	chr2	+	1268	6	ISM	ENSMUSG00000026820.6	ENSMUST00000028162.5	4978	7	1663	3034	88	1162	3prime_fragment	FALSE	canonical	3	184	junction_5	7.57891812859857	107	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGTCTGACAATGGTG	8755	False	NA	NA	False	NA	NA	NA	32287570	32292750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32287748_32290061_32290121_32290414_32290565_32290889_32291091_32291498_32291617_32292187
69038	chr8	+	499	1	ISM	ENSMUSG00000070056.7	ENSMUST00000037666.6	6408	3	88942	2211	69463	218	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGTTGGACGCTTCTAG	NA	False	NA	NA	False	NA	NA	NA	36143893	36144392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_36143900_36144400
69039	chrX	-	1524	8	FSM	ENSMUSG00000019088.15	ENSMUST00000239458.2	1625	8	100	1	-10	0	multi-exon	FALSE	canonical	2	3	junction_5	3.01018678652935	53	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATGTATGCTTAATTCAA	NA	False	NA	NA	False	NA	NA	NA	73325242	73316823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73317298_73317383_73317633_73317711_73317825_73317973_73318075_73320084_73320163_73320251_73320341_73320644_73320949_73325126
69041	chr17	+	1572	1	NIC	ENSMUSG00000024059.11	novel	2537	17	NA	NA	-44	271	mono-exon	FALSE	NA	NA	NA	NA	NA	6	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGAACTTGCTTTTTGCTC	NA	False	NA	NA	False	NA	NA	NA	72163236	72164808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_72163200_72164800
69042	chr3	-	995	7	NNC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	691.075831986299	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGTTTTGTCAAGGTC	7258	False	NA	NA	False	NA	NA	NA	89905936	89902752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904835_89905073_89905311_89905834
69043	chr18	+	1486	6	NNC	ENSMUSG00000024544.10	novel	2495	6	NA	NA	72447	-947	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	4.42718872423573	24	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGCCACAGTGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	68138774	68387675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68138845_68197287_68197758_68239621_68239763_68368725_68368881_68383641_68383696_68387079
69046	chr9	-	847	4	FSM	ENSMUSG00000032112.11	ENSMUST00000213747.2	935	4	21	67	21	-4	multi-exon	FALSE	canonical	3	851	junction_3	13.0213499897497	1333	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTGTTTTCTCTCCTA	1988	False	NA	NA	False	NA	NA	NA	44318382	44315061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100
69047	chr5	-	2229	9	NNC	ENSMUSG00000029699.14	novel	2745	11	NA	NA	-370	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5.21865643628703	26	23	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTTTAACTGAGGTCATT	NA	False	NA	NA	False	NA	NA	NA	135997144	135989076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135990063_135990742_135990821_135991776_135992005_135992209_135992303_135993472_135993551_135994424_135994740_135994928_135995007_135996591_135996898_135997077
69048	chr2	-	1923	15	ISM	ENSMUSG00000026959.14	ENSMUST00000114318.10	3920	21	7698	4849	-6000	-3972	internal_fragment	FALSE	canonical	3	19	junction_1	4.56249126362037	3	39	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGGTGCGCCTTCCATGC	9992	False	NA	NA	False	NA	NA	NA	25201409	25186041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25186147_25186559_25186722_25186888_25187047_25187159_25187309_25187381_25187495_25187607_25187727_25187799_25187965_25188197_25188326_25188405_25188548_25193737_25193822_25193918_25194064_25195049_25195225_25195296_25195419_25200386_25200488_25201354
69049	chr2	-	899	1	ISM	ENSMUSG00000026959.14	ENSMUST00000114318.10	3920	21	27007	9	4591	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGAAAATTTCCGGGTTT	NA	False	NA	NA	False	NA	NA	NA	25182100	25181201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_25181200_25182100
69050	chr4	-	1296	1	Intergenic	novelGene_2155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGAGGTCTGGGACATC	NA	False	NA	NA	False	NA	NA	NA	148171303	148170007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_148170000_148171300
69051	chr8	+	461	1	Intergenic	novelGene_1689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAGAGAGAGAGAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	89677295	89677756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_89677300_89677800
69053	chr14	-	1552	5	FSM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	90	-306	90	0	multi-exon	FALSE	canonical	3	35	junction_3	9.90896059130321	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	70879604	70873642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_70874464_70875906_70876014_70876241_70876387_70878971_70879009_70879162
69054	chr7	-	1686	6	Antisense	novelGene_ENSMUSG00000030657.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCATCCACAGCAATGCCC	NA	False	NA	NA	False	NA	NA	NA	117267127	117233930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_117234039_117236815_117236997_117242702_117242962_117249835_117250032_117255631_117255966_117266519
69055	chr15	-	1283	5	FSM	ENSMUSG00000068101.12	ENSMUST00000230408.2	593	5	0	-690	0	9	multi-exon	FALSE	canonical	3	1067	junction_2	109.17045158833	907	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGCAATCCAGGC	NA	False	NA	NA	False	NA	NA	NA	82128611	82117970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333
69059	chr4	-	760	1	ISM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	262089	591	35019	-591	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGATCTTGCTCTGGACT	NA	False	NA	NA	False	NA	NA	NA	87689512	87688752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_87688800_87689500
69060	chr2	+	1532	5	FSM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	82	2	82	-2	multi-exon	FALSE	canonical	3	34	junction_1	13.5738719604982	129	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCGCTGTGTGTTCAGTCA	NA	False	NA	NA	False	NA	NA	NA	154499019	154536703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_154499292_154531437_154531616_154533129_154533245_154534468_154534596_154535863
69061	chr6	+	1452	4	NNC	ENSMUSG00000029761.17	novel	4041	12	NA	NA	-51	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	102.558384455988	2	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTCCAGATGTCTCTGT	1398	False	NA	NA	False	NA	NA	NA	34686517	34752393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_34686633_34718723_34718871_34722553_34722862_34751511
69062	chr5	+	699	4	NIC	ENSMUSG00000037720.17	novel	6247	8	NA	NA	-13	-143	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	179.804214509993	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTTTTAAAAAGAATTCT	NA	False	NA	NA	False	NA	NA	NA	67418025	67443859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_67418150_67418306_67418377_67441482_67441567_67443438
69063	chr3	-	2201	11	NNC	ENSMUSG00000105512.2	novel	1204	2	NA	NA	-23265	-787	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCCCTCCCGCCACTTCC	6170	False	NA	NA	False	NA	NA	NA	88616969	88593117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88593195_88593644_88593872_88596479_88596609_88596928_88597009_88600380_88600436_88600727_88600891_88603869_88604082_88606153_88606217_88607257_88607313_88607564_88607820_88616084
69064	chr10	+	1155	1	Intergenic	novelGene_3514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGGCCATGGTCCAGATC	6966	False	NA	NA	False	NA	NA	NA	95272167	95273322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_95272200_95273300
69066	chr12	+	2335	16	NNC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	-38	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	43.4472349203286	35	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCATACCATCTACCAGA	NA	False	NA	NA	False	NA	NA	NA	111725351	111773135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743473_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111761981_111762113_111772441_111772509_111772748
69067	chr18	+	748	1	NIC	ENSMUSG00000024581.14	novel	583	4	NA	NA	177	1377	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGACTTTGACTTCTT	NA	False	NA	NA	False	NA	NA	NA	63121457	63122205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_63121500_63122200
69069	chr1	-	2164	11	ISM	ENSMUSG00000026335.17	ENSMUST00000161567.8	3630	24	124023	-6	11232	0	3prime_fragment	FALSE	canonical	1	5	junction_2	7.09154426059656	14	21	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCAGAGTGTATTTTTG	NA	False	NA	NA	False	NA	NA	NA	97780957	97748818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_97749714_97750660_97750715_97753561_97753766_97759179_97759234_97762132_97762242_97765687_97765804_97768004_97768206_97768423_97768635_97769956_97770030_97772320_97772438_97780827
69070	chr17	+	746	2	Intergenic	novelGene_123	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	58	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTAAAAAAGTGATAT	NA	False	NA	NA	False	NA	NA	NA	31949743	31950728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_31949795_31950033
69072	chr9	-	633	4	NNC	ENSMUSG00000032330.8	novel	659	4	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	2932.05642662089	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTCAGCAGTTGGCA	NA	False	NA	NA	False	NA	NA	NA	79666978	79662642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_79662888_79663402_79663644_79665771_79665862_79666921
69073	chr8	+	2316	1	Intergenic	novelGene_1603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATAAACTTTTCCATTTG	NA	False	NA	NA	False	NA	NA	NA	23789435	23791751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_23789400_23791800
69074	chr13	+	727	4	NNC	ENSMUSG00000078941.10	novel	1222	3	NA	NA	46	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	750.138801970823	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTACTTTGGCAGTT	NA	False	NA	NA	False	NA	NA	NA	100787933	100792568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_100787954_100790698_100790792_100791541_100791741_100792153
69075	chr8	+	1338	5	NIC	ENSMUSG00000014856.13	novel	801	6	NA	NA	4	1	intron_retention	FALSE	canonical	3	25	junction_3	162.940748433288	5	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACGGCCGTGTGGGTGAT	12	False	NA	NA	False	NA	NA	NA	106053030	106055685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
69076	chr11	+	1370	1	Intergenic	novelGene_2541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	140	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGACAAGACCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	120524575	120525945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_120524600_120525900
69077	chr16	-	1859	3	NNC	ENSMUSG00000036304.15	novel	5751	5	NA	NA	75	-5107	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	2	14	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTGCTGCTGTTTGAC	NA	False	NA	NA	False	NA	NA	NA	43800079	43794615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_43796109_43799270_43799540_43799982
69078	chr7	-	1899	4	NNC	ENSMUSG00000030592.19	novel	15358	106	NA	NA	40515	0	intron_retention	FALSE	non_canonical	0	0	junction_3	7.54247233265651	4	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTATTGTGTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	28705593	28702768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28702979_28703158_28703211_28703849_28705108_28705214
69079	chr9	-	1286	4	NNC	ENSMUSG00000049073.8	novel	1879	2	NA	NA	-109717	-86	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	30.4448499567478	40	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTAAGATGTATTTATGTA	NA	False	NA	NA	False	NA	NA	NA	40151197	40038305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_40039350_40063206_40063277_40121021_40121120_40151123
69080	chr8	-	1382	1	ISM	ENSMUSG00000038143.17	ENSMUST00000079195.6	10467	4	107951	22	38742	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	9	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATTTGGTTATATGTGT	NA	False	NA	NA	False	NA	NA	NA	47634486	47633104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_47633100_47634500
69081	chr5	-	1104	3	Antisense	novelGene_ENSMUSG00000118625.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAGATAGGGACAGTAT	NA	False	NA	NA	False	NA	NA	NA	104699608	104686689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_104686840_104689031_104689127_104698749
69082	chr5	-	919	1	Antisense	novelGene_ENSMUSG00000097392.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAAACTGGTGCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	104670561	104669642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_104669600_104670600
69084	chr9	-	664	5	NIC	ENSMUSG00000038412.9	novel	713	6	NA	NA	-1	3	combination_of_known_junctions	FALSE	canonical	3	10	junction_4	1100.26050892505	398	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGTATTGAATATTGGTT	NA	False	NA	NA	False	NA	NA	NA	121686680	121678600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_121678756_121679253_121679389_121681556_121681676_121685786_121685939_121686577
69085	chr12	-	1847	2	Intergenic	novelGene_4329	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCCAGCAATGACACGAAC	NA	False	NA	NA	False	NA	NA	NA	23282265	23267746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23267808_23280479
69086	chr10	+	3053	6	Fusion	ENSMUSG00000112847.2_ENSMUSG00000078435.6	novel	2634	4	NA	NA	-1	3024	multi-exon	FALSE	non_canonical	0	0	junction_4	2.87054001888146	16	22	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAGAGACTCTGTGGTCA	NA	False	NA	NA	False	NA	NA	NA	81963845	82005642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_81963933_81974086_81974214_81986050_81986112_81993396_81993474_82002360_82003138_82003718
69087	chr3	+	328	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	1168	-8	1146	8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAATGTTCAACATG	6608	False	NA	NA	False	NA	NA	NA	54390026	54390354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54390000_54390400
69091	chr13	+	784	5	ISM	ENSMUSG00000042015.18	ENSMUST00000160801.8	3062	14	38749	1324	-2487	-1324	3prime_fragment	FALSE	canonical	3	61	junction_4	4.7169905660283	2	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGCACAACATGGCCTTG	NA	False	NA	NA	False	NA	NA	NA	95151604	95158497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_95151724_95153834_95153957_95154624_95154714_95155339_95155474_95158177
69092	chr19	+	866	6	FSM	ENSMUSG00000024845.20	ENSMUST00000150627.11	1472	6	31	575	2	0	multi-exon	FALSE	canonical	3	226	junction_4	186.716255318063	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACAGTTGCACTTTCCTGG	4402	False	NA	NA	False	NA	NA	NA	4175990	4181731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181227_4181282_4181360
69093	chr10	+	694	2	ISM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	-28	28469	-28	-27858	5prime_fragment	FALSE	canonical	3	16	junction_1	0	16	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATCCAGCCTGGAGAACC	NA	False	NA	NA	False	NA	NA	NA	21469015	21469806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_21469134_21469230
69094	chr2	+	1874	1	FSM	ENSMUSG00000043415.6	ENSMUST00000052168.6	2832	1	957	1	957	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	23	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTTCTGGGTAGAGTGG	3457	False	NA	NA	False	NA	NA	NA	19663519	19665393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_19663500_19665400
69096	chr5	+	1317	11	FSM	ENSMUSG00000029452.19	ENSMUST00000094357.11	1366	11	72	-23	72	3	multi-exon	FALSE	canonical	3	13	junction_1	4.13400532171888	57	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTGCGTCATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	121601286	121633480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121620395_121620501_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
69098	chr11	-	786	5	NNC	ENSMUSG00000020321.17	novel	1958	9	NA	NA	126	-464	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	617.385768786421	26	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGAAAATCTCTCAGACT	NA	False	NA	NA	False	NA	NA	NA	21521808	21507250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_21507586_21514040_21514217_21515823_21515921_21516619_21516719_21521729
69100	chr9	+	724	2	ISM	ENSMUSG00000032246.15	ENSMUST00000163820.3	699	4	13052	-4	13039	-3	3prime_fragment	FALSE	canonical	3	97	junction_1	0	195	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTGGAATTGGTGTTTC	5520	False	NA	NA	False	NA	NA	NA	62778454	62783200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_62778737_62782758
69101	chr4	+	1018	3	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-183774	-3831	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	22.5	1	57	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTGTATTTAAAGAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	147393099	147594046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147393194_147592042_147592098_147593177
69102	chr5	-	988	1	Antisense	novelGene_ENSMUSG00000029234.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGCGATCCATCCCCACCC	9337	False	NA	NA	False	NA	NA	NA	76354452	76353464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_76353500_76354500
69103	chr14	-	1843	11	FSM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	372	461	239	-461	multi-exon	FALSE	canonical	3	248	junction_7	30.6098023515344	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCAGAACTTGAGTCTTT	7675	False	NA	NA	False	NA	NA	NA	121616374	121524215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_121524777_121529391_121529529_121530832_121530902_121531601_121531726_121532066_121532213_121534546_121534733_121539597_121539756_121540158_121540268_121545426_121545484_121574833_121575065_121616309
69104	chr5	+	1186	1	Antisense	novelGene_ENSMUSG00000018974.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACAGACCCAACTCCCT	NA	False	NA	NA	False	NA	NA	NA	113888665	113889851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_113888700_113889900
69105	chr10	-	629	6	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	13	-73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1168.4676461075	1	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTCACTGTTCTGTTCAG	5622	False	NA	NA	False	NA	NA	NA	79875522	79871857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79871918_79872644_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
69106	chr13	+	1057	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	5	-4	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	69.9828550432176	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATTTGTAGTGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	34221644	34258050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34257658
69107	chr6	+	1042	6	NNC	ENSMUSG00000029910.15	novel	7557	6	NA	NA	-9	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	430.344234305515	2	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCAGTGATACAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	66512364	66517995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66512584_66512941_66513089_66514554_66514674_66515948_66516053_66516754_66517028_66517815
69108	chr3	+	2240	1	Intergenic	novelGene_3178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCCTACTGCTTTATGAT	NA	False	NA	NA	False	NA	NA	NA	113393336	113395576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_113393300_113395600
69110	chr8	+	844	1	Intergenic	novelGene_1778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAACAATTAATTTAC	NA	False	NA	NA	False	NA	NA	NA	123170987	123171831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_123171000_123171800
69112	chr1	+	1078	8	NNC	ENSMUSG00000005677.15	novel	1305	8	NA	NA	14	-1014	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.39970842444753	5	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACAACAGTCTCGGCTCC	8747	False	NA	NA	False	NA	NA	NA	171041603	171045273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171041743_171041911_171042055_171042512_171042644_171043947_171044118_171044314_171044455_171044644_171044791_171044882_171045000_171045181
69113	chr7	-	938	3	NNC	ENSMUSG00000108387.2	novel	239	2	NA	NA	-74	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6	49	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTCCTCAATATTTATT	NA	False	NA	NA	False	NA	NA	NA	78922633	78921453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78922092_78922195_78922308_78922445
69114	chr6	+	248	1	Intergenic	novelGene_4174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATGTCATTTTGCGGA	NA	False	NA	NA	False	NA	NA	NA	55015449	55015697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_55015400_55015700
69115	chr7	-	709	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	-103	0	-8	0	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6995	False	NA	NA	False	NA	NA	NA	12768674	12765940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
69116	chr9	-	2246	1	ISM	ENSMUSG00000032232.15	ENSMUST00000121322.8	6541	18	142845	3	2352	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAATCCTGGCTCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	71536039	71533793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_71533800_71536000
69117	chr6	-	741	6	ISM	ENSMUSG00000014554.14	ENSMUST00000138941.3	828	7	-84	1081	2	-177	5prime_fragment	FALSE	canonical	3	8	junction_2	102.084278907185	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATAGTCAGCACGAAGAC	NA	False	NA	NA	False	NA	NA	NA	83483887	83458371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_83458445_83458759_83458821_83463965_83464114_83467402_83467591_83473667_83473781_83483729
69119	chr18	-	1780	2	Antisense	novelGene_ENSMUSG00000097738.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	0	12	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACCTTGAATTAACTGT	NA	False	NA	NA	False	NA	NA	NA	82883923	82873457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_82875202_82883887
69120	chr18	+	462	2	Genic_Genomic	ENSMUSG00000058064.7	novel	534	1	NA	NA	-21	39	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCAAAAAAAAAGAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	15965829	15966423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_15966115_15966246
69121	chr2	+	1611	2	Intergenic	novelGene_2693	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	45	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTAGAGTCTGGGGTGT	5775	False	NA	NA	False	NA	NA	NA	119680853	119686235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_119680961_119684731
69122	chr4	-	1301	6	NNC	ENSMUSG00000028232.14	novel	2690	8	NA	NA	0	9419	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	29.7684396635094	1	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTACTGTAGATAATTGC	-6	True	NA	NA	False	NA	NA	NA	3574804	3559923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3560693_3564092_3564258_3569363_3569464_3569630_3569753_3570328_3570373_3574703
69123	chrX	+	1521	2	NNC	ENSMUSG00000047797.15	novel	1513	2	NA	NA	-1607	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	34	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGAGGTGTTTTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	100425734	100429231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100425782_100427757
69124	chr3	-	1015	5	FSM	ENSMUSG00000045031.19	ENSMUST00000102955.11	1064	5	40	9	14	-9	multi-exon	TRUE	canonical	3	18	junction_2	3.41869858279434	99	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTGTTTTTAAGTATCT	NA	False	NA	NA	False	NA	NA	NA	37366555	37362779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441_37364589_37366505
69125	chr5	+	1049	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	18	21	18	-21	multi-exon	FALSE	canonical	3	209	junction_1	0	1587	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACTCTTTGCTCCCAAA	2432	False	NA	NA	False	NA	NA	NA	115479301	115481607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115479477_115480733
69126	chr4	-	449	1	Antisense	novelGene_ENSMUSG00000029066.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAACCACGTGGTGGCTC	3978	False	NA	NA	False	NA	NA	NA	155887763	155887314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_155887300_155887800
69127	chr19	-	986	1	Intergenic	novelGene_1208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCCGTTTTTGCCCAA	1695	False	NA	NA	False	NA	NA	NA	12766061	12765075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_12765100_12766100
69128	chr14	-	1779	4	ISM	ENSMUSG00000021944.16	ENSMUST00000121312.2	2407	6	9822	219	9822	-219	3prime_fragment	FALSE	canonical	2	11	junction_2	4.02768199119819	7	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTTTATTTTACCCAAAA	NA	False	NA	NA	False	NA	NA	NA	63441234	63436591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_63438001_63438926_63439082_63440759_63440848_63441107
69129	chr19	+	2025	14	FSM	ENSMUSG00000048029.11	ENSMUST00000200910.4	2567	14	3	539	3	-51	multi-exon	FALSE	canonical	0	0	junction_6	1.9551176964829	11	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTCGGTTTCACCGTCGG	NA	False	NA	NA	False	NA	NA	NA	58931859	58959314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_58932054_58933965_58934095_58935083_58935275_58941568_58941724_58943574_58943745_58943849_58943982_58946018_58946073_58947437_58947495_58948554_58948723_58951213_58951340_58952809_58953006_58956933_58957002_58957504_58957623_58959047
69130	chr5	-	463	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	-21	-1	-21	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCTCAAGGATCGGGGT	NA	False	NA	NA	False	NA	NA	NA	129205602	129205139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129205100_129205600
69131	chr10	-	591	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-35	693	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	24.9131825880731	873	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34109562	34106209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_34106388_34106902_34107071_34107314_34107400_34109402
69132	chr8	-	1632	15	FSM	ENSMUSG00000056228.11	ENSMUST00000049461.7	1902	15	228	42	-19	2	multi-exon	FALSE	canonical	3	35	junction_9	50.1547096288991	110	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAAAGTGGGCCTATGCT	NA	False	NA	NA	False	NA	NA	NA	11600555	11564018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11564192_11564492_11564700_11566150_11566250_11567818_11567943_11568405_11568545_11568923_11568991_11576001_11576070_11579579_11579714_11580294_11580428_11587271_11587356_11591897_11592004_11592518_11592591_11597726_11597845_11600257_11600309_11600498
69133	chr17	-	1006	6	NNC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	868.188090220086	1	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	80514732	80508740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80511508_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
69134	chr6	+	579	5	NNC	ENSMUSG00000034192.6	novel	743	4	NA	NA	-29	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	893.227994411281	91	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACTTTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	91492999	91499601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222_91499425_91499492
69136	chr17	+	878	7	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	18	-13	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	414.989725441754	4	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGTGACGTGAAAACCT	7406	False	NA	NA	False	NA	NA	NA	36198851	36203545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36198890_36198975_36199095_36199246_36199315_36200089_36200172_36200330_36200493_36201806_36201981_36203310
69138	chr17	+	762	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174241.8	521	4	-21	-220	10	0	multi-exon	FALSE	canonical	3	88	junction_1	766.950237412224	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	4	True	NA	NA	False	NA	NA	NA	35200865	35204867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35201062_35204084_35204116_35204224_35204285_35204392
69141	chr4	+	1038	1	Intergenic	novelGene_1986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGACTTCTTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	137341219	137342257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_137341200_137342300
69142	chr15	-	729	7	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	-2	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	235.838515844116	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATGCAGTTGTGGAATA	NA	False	NA	NA	False	NA	NA	NA	93296188	93283995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93293467_93293497_93295050_93295137_93296043
69143	chr15	+	1512	6	FSM	ENSMUSG00000037386.17	ENSMUST00000226410.2	3685	6	151	2022	151	-103	multi-exon	FALSE	canonical	3	7	junction_1	17.2348484182484	30	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTGTGACTGCACTGT	NA	False	NA	NA	False	NA	NA	NA	39523112	39545746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_39523323_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
69144	chr1	+	1956	15	FSM	ENSMUSG00000026480.13	ENSMUST00000027754.7	2596	15	-101	741	-48	-741	multi-exon	FALSE	canonical	0	0	junction_10	6.91382820210072	75	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCAATATGACAACTCAGA	458	False	NA	NA	False	NA	NA	NA	152683539	152712000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_152683957_152686668_152686752_152692741_152692851_152697266_152697402_152699967_152700076_152701632_152701693_152703168_152703213_152706102_152706245_152706443_152706513_152707364_152707441_152709073_152709097_152709527_152709680_152709819_152709932_152710777_152710956_152711752
69145	chr9	-	1698	4	FSM	ENSMUSG00000066892.15	ENSMUST00000131343.8	761	4	58	-995	42	-17	multi-exon	FALSE	canonical	3	9	junction_3	34.3446583263767	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAATAATGTTTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	20555996	20549101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20550495_20553319_20553393_20555490_20555595_20555868
69147	chr13	-	1046	7	NNC	ENSMUSG00000034789.9	novel	1168	8	NA	NA	0	-1	intron_retention	FALSE	canonical	2	8	junction_6	210.419158401088	143	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCTGTGTGCACTGGGT	6442	False	NA	NA	False	NA	NA	NA	55469758	55467698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55468028_55468124_55468188_55468315_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469662
69148	chr16	-	923	4	NNC	ENSMUSG00000023791.19	novel	670	2	NA	NA	2	-2157	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	180.697414357692	57	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGATTTCACTAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	31918543	31908476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_31908938_31911161_31911304_31915817_31915882_31918287
69149	chr11	+	1730	9	NIC	ENSMUSG00000020389.20	novel	2216	9	NA	NA	-2	10	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3.70809924354783	3	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAGACTATCCTAGAACT	NA	False	NA	NA	False	NA	NA	NA	51895045	51918401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51895155_51895736_51895920_51901957_51902153_51909103_51909283_51910556_51910670_51913564_51913705_51916665_51916755_51917585_51917746_51917839
69150	chr8	+	526	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	9	3	9	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATCTCAGACACTA	NA	False	NA	NA	False	NA	NA	NA	87774325	87774851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_87774300_87774900
69151	chr19	-	2017	7	ISM	ENSMUSG00000052942.14	ENSMUST00000161026.2	2438	9	35	20739	35	-19761	5prime_fragment	FALSE	canonical	2	9	junction_4	3.23608130649127	5	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGCCCTACCAGCCAGAA	NA	False	NA	NA	False	NA	NA	NA	28517785	28261111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_28261228_28276177_28276347_28294653_28294814_28331605_28331717_28335190_28335353_28508272_28509387_28517600
69152	chr15	-	875	2	Intergenic	novelGene_3358	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	5	junction_1	0	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATTGAGTTTCTAGAATT	1464	False	NA	NA	False	NA	NA	NA	97029749	97026300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97027102_97029675
69155	chr17	-	910	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	96	0	-17	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	2119	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	26314480	26310707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
69156	chr14	-	932	7	NIC	ENSMUSG00000033111.17	novel	809	6	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	61.1375952712859	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	10185557	10167783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185505
69158	chr5	-	1412	6	Antisense	novelGene_ENSMUSG00000023707.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGGCGAAGCGGCCGCG	9867	False	NA	NA	False	NA	NA	NA	124253536	124250405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_124250528_124250849_124250907_124251278_124251392_124251488_124251596_124252454_124252706_124252774
69159	chr11	+	1736	6	NIC	ENSMUSG00000020836.16	novel	1418	10	NA	NA	3331	-15	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	2.57681974534502	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTAGAAATGCATCTGG	8794	False	NA	NA	False	NA	NA	NA	77358067	77361295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_77358170_77359091_77359197_77359286_77359433_77359735_77359794_77359882_77360114_77360201
69161	chr11	+	1833	2	Intergenic	novelGene_2202	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	11	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCAACCGTGTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	5407363	5414193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_5407536_5412532
69164	chr11	+	272	1	Intergenic	novelGene_2385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTCTCACTGTTCCCT	NA	False	NA	NA	False	NA	NA	NA	66804673	66804945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_66804700_66804900
69165	chr2	+	2067	9	Antisense	novelGene_ENSMUSG00000027210.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	118	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGACTCAGAGCAAACCTC	NA	False	NA	NA	False	NA	NA	NA	115693920	115890614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_115694993_115697747_115697860_115699218_115699288_115752155_115752227_115830611_115830757_115879572_115879677_115889105_115889256_115889990_115890042_115890321
69167	chr1	-	894	6	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.8	1	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCTTTTAAGCTACATAG	351	False	NA	NA	False	NA	NA	NA	87155785	87147314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87147416_87148639_87148775_87152072_87152169_87153565_87153723_87153816_87153956_87155519
69168	chr18	-	571	1	NIC	ENSMUSG00000097080.9	novel	1173	2	NA	NA	3	-10491	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGTGGCTAGTCCTGA	NA	False	NA	NA	False	NA	NA	NA	38383248	38382677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_38382700_38383200
69169	chr17	+	804	5	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	-12	-2211	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	24.0572234474388	221	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTGTCTGAACAGTAAT	1463	False	NA	NA	False	NA	NA	NA	21709247	21727815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21727601
69170	chr4	-	738	3	FSM	ENSMUSG00000059816.6	ENSMUST00000053157.7	593	3	-134	-11	-134	11	multi-exon	FALSE	canonical	3	46	junction_2	6	262	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGAATCTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	108240680	108224962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108225239_108234543_108234684_108240358
69173	chr6	+	954	9	NIC	ENSMUSG00000069678.11	novel	918	9	NA	NA	-125	2	intron_retention	FALSE	canonical	3	25	junction_1	56.927448344362	586	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCACTTTTCATCTTCCT	471	False	NA	NA	False	NA	NA	NA	83055201	83057830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83055220_83055381_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530
69176	chr10	-	692	3	NNC	ENSMUSG00000020108.5	novel	1755	3	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	365	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTGAGTCTCATCGGCG	NA	False	NA	NA	False	NA	NA	NA	59787658	59785493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_59785929_59787277_59787395_59787518
69177	chr16	+	425	3	Intergenic	novelGene_3610	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	44	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCCATGTACTACTGCC	NA	False	NA	NA	False	NA	NA	NA	20266794	20278031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_20266906_20271001_20271084_20277799
69178	chr17	+	974	7	NNC	ENSMUSG00000024422.15	novel	3351	20	NA	NA	40	-5	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	400.503017050642	82	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGAAAACCTGCCTTATG	7428	False	NA	NA	False	NA	NA	NA	36198873	36203553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36198890_36198975_36199124_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
69179	chr4	+	901	7	FSM	ENSMUSG00000078689.9	ENSMUST00000107521.8	642	7	-105	-154	-105	0	multi-exon	FALSE	canonical	3	12	junction_2	4.92442890089805	110	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTCTCTGTGTCCAGA	8	False	NA	NA	False	NA	NA	NA	59964188	60007274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_59964368_60003977_60004112_60004813_60004888_60005471_60005583_60005921_60006024_60006188_60006235_60007019
69180	chr7	-	570	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182173.2	391	3	-24	-155	-3	0	multi-exon	FALSE	canonical	3	803	junction_1	0	1820	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	4756025	4754790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4755161_4755722_4755849_4755951
69181	chr1	+	516	5	NIC	ENSMUSG00000046330.11	novel	558	4	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	2	14	junction_3	6621.49731933798	111	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTAACTTTTTTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	72750448	72752772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_72750483_72750830_72750960_72751300_72751384_72752340_72752499_72752660
69182	chr7	+	1992	8	ISM	ENSMUSG00000030924.17	ENSMUST00000133758.9	2019	14	-8	20722	-8	206	intron_retention	FALSE	canonical	2	10	junction_1	9.54473890770861	13	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTACCTTTGTAGTATG	NA	False	NA	NA	False	NA	NA	NA	119393333	119427439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_119393726_119404365_119404510_119417605_119417695_119418654_119418771_119422978_119423118_119423267_119423363_119424758_119424862_119426525
69187	chr1	+	2143	13	NIC	ENSMUSG00000026305.16	novel	2760	23	NA	NA	-15	-2	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	25.9117090649511	5	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTTTAAAAATGAAACGT	NA	False	NA	NA	False	NA	NA	NA	90981213	91056638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
69190	chr1	-	884	2	FSM	ENSMUSG00000050777.8	ENSMUST00000056089.8	1311	2	294	133	294	-133	multi-exon	FALSE	canonical	3	40	junction_1	0	205	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTCTTCCTACGGTGTT	NA	False	NA	NA	False	NA	NA	NA	120001510	119995239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_119996055_120001441
69191	chr17	+	1428	7	NNC	ENSMUSG00000040482.17	novel	1447	7	NA	NA	-19	-6	intron_retention	FALSE	canonical	2	5	junction_2	60.771886775237	2	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGGTCTCTTGCTGTGTC	3020	False	NA	NA	False	NA	NA	NA	35056038	35058156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35056193_35056368_35056762_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
69193	chr5	+	1219	4	Antisense	novelGene_ENSMUSG00000034310.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	2.49443825784929	17	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTGCCAAGAAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	127921599	127951962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_127921656_127922359_127922491_127930006_127930122_127951045
69195	chr5	-	1333	12	Antisense	novelGene_ENSMUSG00000029095.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCGCCGACACCACTTCGC	NA	False	NA	NA	False	NA	NA	NA	36015520	35959843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_35959885_35964379_35964499_35966526_35966654_35969469_35969563_35981368_35981455_35985465_35985525_35989027_35989085_35990394_35990471_35994286_35994439_35998621_35998750_36014480_36014523_36015167
69198	chr4	-	776	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-10	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8528.15983594937	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCTTGAATCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	86775601	86772914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86773193_86774103_86774248_86774382_86774594_86774997_86775097_86775557
69199	chr7	-	1135	7	NNC	ENSMUSG00000030538.16	novel	1047	7	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	296.27052202712	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2292	False	NA	NA	False	NA	NA	NA	79882320	79876906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79881750_79882127_79882257
69200	chr11	-	1150	1	Intergenic	novelGene_2410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTACAAAGACAGCAGCCA	NA	False	NA	NA	False	NA	NA	NA	77779372	77778222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_77778200_77779400
69201	chr1	+	2616	1	Intergenic	novelGene_457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAGAAAATCAGAG	NA	False	NA	NA	False	NA	NA	NA	136855210	136857826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_136855200_136857800
69202	chr19	-	873	7	NNC	ENSMUSG00000036748.17	novel	762	7	NA	NA	-3	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	403.744865808429	8	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGTATATGCTCATTCT	5849	False	NA	NA	False	NA	NA	NA	46327072	46318986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46319260_46319788_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46327007
69203	chr3	-	1400	6	NNC	ENSMUSG00000038766.17	novel	1539	6	NA	NA	15	-13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	10.303397497913	19	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTTAAACCAGCTGTGG	8791	False	NA	NA	False	NA	NA	NA	95125212	95110336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95111237_95111951_95112120_95113773_95113914_95116150_95116248_95123524_95123580_95125172
69204	chr9	+	1053	8	FSM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	193	1175	162	-10	multi-exon	FALSE	canonical	3	895	junction_7	57.310824564343	241	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTAAAGTGAAGATGTCCG	172	False	NA	NA	False	NA	NA	NA	7184712	7207030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7205297_7205401_7206719
69205	chr9	+	2248	10	NIC	ENSMUSG00000040563.14	novel	2626	10	NA	NA	16	-346	combination_of_known_junctions	TRUE	canonical	3	12	junction_8	8.37692303332034	17	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACACCCTCCAACTCCCT	113	False	NA	NA	False	NA	NA	NA	21848344	21859854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21848455_21849690_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858349_21858676_21858729_21858899
69206	chr2	-	990	6	NIC	ENSMUSG00000070953.14	novel	2968	8	NA	NA	-2131	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	164.862366839737	29	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGACTTTTTACAAAAG	5113	False	NA	NA	False	NA	NA	NA	34687448	34669228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34687386
69209	chr11	+	1373	4	FSM	ENSMUSG00000049904.8	ENSMUST00000059319.8	1568	4	192	3	192	-3	multi-exon	FALSE	canonical	3	52	junction_3	9.0921211313239	162	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGCTTATCTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	22462279	22469231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22462584_22467187_22467292_22467407_22467522_22468380
69211	chr16	-	1378	7	NNC	ENSMUSG00000003166.21	novel	4003	10	NA	NA	5	-78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	163.408911085725	21	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACATGGCTGACTGTTTAC	NA	False	NA	NA	False	NA	NA	NA	17709508	17667252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690552_17709249
69212	chr19	-	932	9	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	19	16066	19	-4	5prime_fragment	FALSE	canonical	3	315	junction_8	31.196954979613	84	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTAAAGTCTTTAGCATT	NA	False	NA	NA	False	NA	NA	NA	38212567	38192994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
69213	chr8	+	852	5	NNC	ENSMUSG00000008450.9	novel	948	5	NA	NA	-10	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1489.99471475573	1	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTAAATTGTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	106587286	106605967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603223_106605444
69214	chr6	-	732	5	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	42.3932482831877	83	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	149090194	149059075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149090103
69216	chr2	+	807	2	NNC	ENSMUSG00000086454.8	novel	334	3	NA	NA	662	-7	at_least_one_novel_splicesite	FALSE	canonical	3	251	junction_1	0	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGATCCAATGCCCCCT	NA	False	NA	NA	False	NA	NA	NA	104398203	104399170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104398836_104398995
69218	chr4	+	986	9	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	-5	347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1164.36892107914	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTTATGGAAGAAAGATA	NA	False	NA	NA	False	NA	NA	NA	118478039	118483162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478334_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481376_118482719_118482843_118483016
69219	chr10	+	2708	7	FSM	ENSMUSG00000000732.10	ENSMUST00000105393.3	2814	7	58	48	0	-48	multi-exon	FALSE	canonical	3	8	junction_2	4.83045891539648	1	149	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGACTTCTAGAAACCTAA	NA	False	NA	NA	False	NA	NA	NA	77905193	77915311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77905370_77906994_77907114_77907571_77907926_77909540_77909835_77911038_77911189_77912977_77913008_77913726
69220	chr11	-	1203	1	NIC	ENSMUSG00000032633.13	novel	3437	13	NA	NA	-96	423	mono-exon	FALSE	NA	NA	NA	NA	NA	7	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTGGTGTTACGGGCT	NA	False	NA	NA	False	NA	NA	NA	59700633	59699430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59699400_59700600
69221	chr18	-	1707	1	NIC	ENSMUSG00000053644.14	novel	4131	20	NA	NA	-41	-10194	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	90	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAGTTAACAGTGA	NA	False	NA	NA	False	NA	NA	NA	56695339	56693632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_56693600_56695300
69222	chr12	-	1349	3	FSM	ENSMUSG00000113769.2	ENSMUST00000221669.2	1366	3	24	-7	24	7	multi-exon	FALSE	canonical	2	6	junction_2	0.5	26	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATCCCGAGCACTAATT	NA	False	NA	NA	False	NA	NA	NA	111910885	111908773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111909646_111910318_111910501_111910590
69223	chr11	-	951	2	FSM	ENSMUSG00000020775.14	ENSMUST00000138457.2	995	2	46	-2	-30	2	multi-exon	FALSE	canonical	3	763	junction_1	0	44	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGTGCCCCATCTCCTT	456	False	NA	NA	False	NA	NA	NA	116029645	116028605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_116029448_116029536
69224	chr2	+	831	4	FSM	ENSMUSG00000027637.4	ENSMUST00000029165.4	1045	4	214	0	197	0	multi-exon	FALSE	canonical	3	1149	junction_1	99.8031395631754	265	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGCATGCCTGGTA	4856	False	NA	NA	False	NA	NA	NA	156705261	156715483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_156705338_156707176_156707281_156714257_156714388_156714962
69225	chr12	-	1189	3	NNC	ENSMUSG00000021200.15	novel	2399	6	NA	NA	10069	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	20.5	227	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTCTGCCCTGTGATTC	NA	False	NA	NA	False	NA	NA	NA	103291774	103287403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_103287934_103290021_103290176_103291269
69226	chr8	+	1746	2	FSM	ENSMUSG00000025588.5	ENSMUST00000212171.2	1208	2	-9	-529	-9	505	multi-exon	FALSE	canonical	1	1	junction_1	0	14	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCTAGTAAAGTGGAT	NA	False	NA	NA	False	NA	NA	NA	67933563	67945261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_67933668_67943619
69227	chr9	+	1067	2	Antisense	novelGene_ENSMUSG00000032473.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	32	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCATTCCTGTTGAGAC	1551	False	NA	NA	False	NA	NA	NA	99577353	99581836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_99577420_99580835
69229	chr17	-	1025	1	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTATTAATAGGACTCCA	5131	False	NA	NA	False	NA	NA	NA	5488855	5487830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_5487800_5488900
69230	chr6	-	1226	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	-7	4	-7	-4	multi-exon	FALSE	canonical	3	118	junction_1	3.77123616632825	100	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATTTCTCAACGTG	NA	False	NA	NA	False	NA	NA	NA	67014397	67012083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
69232	chr11	-	2019	7	NNC	ENSMUSG00000001507.17	novel	4636	25	NA	NA	2278	-33	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	23.4692470172257	1	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACTAAAATAAATAAACTGT	6952	False	NA	NA	False	NA	NA	NA	94944743	94935332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94936590_94937302_94937417_94937746_94937873_94942277_94942377_94943269_94943384_94944050_94944174_94944557
69233	chr17	-	1586	11	Antisense	novelGene_ENSMUSG00000000127.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGAGTTCTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	64298667	64203107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_64203270_64214266_64214447_64218457_64218559_64228607_64228790_64230349_64230494_64231050_64231174_64241284_64241408_64248285_64248481_64280062_64280153_64288474_64288682_64298588
69234	chr19	-	175	1	Intergenic	novelGene_1280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAAGATGGTCCTTGTG	NA	False	NA	NA	False	NA	NA	NA	44253430	44253255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_44253300_44253400
69235	chr8	-	2664	5	Antisense	novelGene_ENSMUSG00000031596.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGAAGGCGGGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	41360359	41315441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_41315594_41351971_41352364_41355533_41355700_41357480_41357615_41358539
69236	chr11	-	2925	1	Intergenic	novelGene_2403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	87	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCGAACGTAGGCTGGATT	NA	False	NA	NA	False	NA	NA	NA	72147740	72144815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_72144800_72147700
69237	chr13	-	2261	1	Intergenic	novelGene_1361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCCATGTTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	48636056	48633795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_48633800_48636100
69238	chr7	-	1123	5	NIC	ENSMUSG00000031022.16	novel	1957	6	NA	NA	-9	-330	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	2.04633819296811	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACTTGAAAAGGGCTTA	NA	False	NA	NA	False	NA	NA	NA	109320232	109311720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_109311743_109315052_109315695_109317131_109317367_109319737_109319895_109320165
69239	chr11	-	1220	1	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-912	-492	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGATGAGGATGGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	106142436	106141216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106141200_106142400
69240	chr9	+	664	2	Antisense	novelGene_ENSMUSG00000032015.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	9	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTCCCTCTTCTGGAGT	NA	False	NA	NA	False	NA	NA	NA	43117138	43118341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_43117184_43117722
69242	chr7	+	1591	10	NNC	ENSMUSG00000023467.19	novel	259	2	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	31.4928955343233	2	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCTCACCAACTCTGTT	1284	False	NA	NA	False	NA	NA	NA	45165231	45171793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45165424_45165662_45165801_45165939_45166111_45167203_45167341_45168009_45168317_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
69243	chr2	-	576	5	NNC	ENSMUSG00000061411.13	novel	587	4	NA	NA	8887	-147	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	21.6043977004683	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGATGGCTCAGTGGGTA	NA	False	NA	NA	False	NA	NA	NA	153363004	153295965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_153296044_153312607_153312718_153319790_153319903_153325606_153325763_153362884
69244	chr15	+	940	6	FSM	ENSMUSG00000033099.11	ENSMUST00000138880.9	3721	6	7	2774	7	0	multi-exon	FALSE	canonical	3	420	junction_1	39.9929993873928	1868	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	78819139	78825064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
69246	chr8	+	1467	13	FSM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	504	5	504	-5	multi-exon	FALSE	canonical	3	44	junction_3	4.71625439894367	46	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGTGTCGTGTCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	120173961	120199374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120174004_120176820_120176846_120178820_120178930_120180939_120180966_120181097_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
69248	chr3	+	784	1	Intergenic	novelGene_3089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTAGTTAGTATTTGCCC	NA	False	NA	NA	False	NA	NA	NA	22235680	22236464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_22235700_22236500
69249	chr2	+	648	3	NNC	ENSMUSG00000027076.11	novel	690	3	NA	NA	-10632	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	204	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	NA	False	NA	NA	False	NA	NA	NA	84646708	84660557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84646818_84657942_84658058_84660133
69250	chr11	+	1022	2	Intergenic	novelGene_2418	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	74	junction_1	0	432	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGATCTTAATTGTCTC	NA	False	NA	NA	False	NA	NA	NA	79864504	79865991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_79864672_79865136
69251	chr13	-	309	1	ISM	ENSMUSG00000021706.15	ENSMUST00000022217.9	6150	18	43427	25	22155	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATATAAAGATGATTAC	NA	False	NA	NA	False	NA	NA	NA	92623949	92623640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_92623600_92623900
69252	chr13	-	1327	3	ISM	ENSMUSG00000021720.12	ENSMUST00000224662.2	2734	8	112768	-1	89378	1	3prime_fragment	FALSE	canonical	2	4	junction_2	0.5	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTATTGTTTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	105318169	105267082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_105268072_105304035_105304162_105317957
69253	chr18	+	950	5	NNC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-53	378	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	432.027993884656	6	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTTTTTACTGTCATAA	NA	False	NA	NA	False	NA	NA	NA	57506910	57522685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517353_57522299
69254	chr13	+	804	1	FSM	ENSMUSG00000114003.2	ENSMUST00000221154.2	781	1	-18	-5	-18	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTAGGGGACATGCT	NA	False	NA	NA	False	NA	NA	NA	3348868	3349672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3348900_3349700
69255	chr11	+	1501	2	FSM	ENSMUSG00000020739.12	ENSMUST00000134209.2	434	2	-949	-118	360	-5	multi-exon	FALSE	canonical	3	1201	junction_1	0	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGACCAATTGTTAATC	4635	False	NA	NA	False	NA	NA	NA	115472933	115474727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115474254_115474546
69256	chr7	-	695	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	3	4	3	-4	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGACTTCCTTGTATGA	2243	False	NA	NA	False	NA	NA	NA	79882369	79876910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
69257	chr19	-	1910	2	Antisense	novelGene_ENSMUSG00000117789.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	116	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTTACCGCAGCCTCCCG	8568	False	NA	NA	False	NA	NA	NA	5091120	5088936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_5090057_5090330
69258	chr2	+	834	6	NNC	ENSMUSG00000027374.13	novel	3228	11	NA	NA	-5	108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	505.201900233956	2	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTATAGATTTGTCTTAC	4159	False	NA	NA	False	NA	NA	NA	127429333	127445883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437660_127445548
69259	chr8	+	745	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	83	672	0	-149	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	2	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTAGATTTTCCTCCACT	NA	False	NA	NA	False	NA	NA	NA	85696322	85700791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
69262	chr6	+	1272	1	Antisense	novelGene_ENSMUSG00000030306.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTCTGGAACCAGCT	NA	False	NA	NA	False	NA	NA	NA	148138097	148139369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_148138100_148139400
69263	chr4	+	1254	11	NNC	ENSMUSG00000010517.8	novel	4468	19	NA	NA	-10976	-2028	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	401.232114866196	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGAGATGGGCTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	109687005	109819129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783083_109783160_109792679_109792896_109818995
69264	chr14	-	2529	1	Antisense	novelGene_ENSMUSG00000048279.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	84	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTGATGGCTCAGAGG	NA	False	NA	NA	False	NA	NA	NA	61452943	61450414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_61450400_61452900
69265	chr1	+	1456	3	FSM	ENSMUSG00000004768.15	ENSMUST00000135330.8	2047	3	9	582	9	-582	multi-exon	FALSE	canonical	3	112	junction_1	11.5	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACATTTTGTATGGAATA	NA	False	NA	NA	False	NA	NA	NA	33758999	33763975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_33759255_33760688_33760781_33762866
69266	chr15	+	904	3	FSM	ENSMUSG00000022427.5	ENSMUST00000229502.2	595	3	-16	-293	4	178	multi-exon	FALSE	canonical	2	12	junction_1	445.5	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTGAAAGTGTTATTGCT	8182	False	NA	NA	False	NA	NA	NA	79555065	79557059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79555210_79556097_79556216_79556417
69267	chr17	+	1787	6	ISM	ENSMUSG00000024044.20	ENSMUST00000238898.2	4368	20	127818	22	2962	-18	3prime_fragment	TRUE	canonical	3	30	junction_5	17.9041894538681	21	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGGCAAATGCATTGAA	NA	False	NA	NA	False	NA	NA	NA	69591670	69596962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_69591912_69592896_69593029_69593707_69593807_69594251_69594333_69594606_69594724_69595845
69268	chr6	-	653	1	Intergenic	novelGene_4220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGTGTTTGTGGTGCTG	9707	False	NA	NA	False	NA	NA	NA	112343283	112342630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_112342600_112343300
69269	chr4	-	821	7	NNC	ENSMUSG00000028964.15	novel	908	7	NA	NA	-9	0	intron_retention	FALSE	non_canonical	0	0	junction_5	2144.58662813036	13	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	150994334	150981589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992812_150992881_150994239
69270	chr7	-	683	7	ISM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	155	717	-42	-717	5prime_fragment	FALSE	canonical	3	553	junction_6	190.840829547092	10	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGGCCAAATACTTCCAG	NA	False	NA	NA	False	NA	NA	NA	125090613	125067528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
69271	chr8	-	1924	1	Antisense	novelGene_ENSMUSG00000074384.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGCGAGCTTCTTCTTCC	5065	False	NA	NA	False	NA	NA	NA	37462678	37460754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_37460800_37462700
69272	chr3	-	1122	8	FSM	ENSMUSG00000028020.17	ENSMUST00000107743.8	1101	8	-21	0	-21	0	multi-exon	FALSE	canonical	3	32	junction_4	4.17475405605784	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGGTTTTGTATTTAA	NA	False	NA	NA	False	NA	NA	NA	80820856	80762935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
69274	chr3	+	122	1	Intergenic	novelGene_3073	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCGTCATCTAATTAGTGA	NA	False	NA	NA	False	NA	NA	NA	5925407	5925529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925500
69275	chr19	+	1312	4	ISM	ENSMUSG00000071657.13	ENSMUST00000171649.8	1962	12	0	5287	0	3153	5prime_fragment	FALSE	canonical	3	57	junction_1	48.787521173167	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGACTTTGAGAATTAATG	NA	False	NA	NA	False	NA	NA	NA	8814830	8820760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372
69279	chr4	-	842	8	NNC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	41	-1086	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	144.483739640169	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCCATCTGTGATAGAG	-1	True	NA	NA	False	NA	NA	NA	58987078	58966524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58966764_58973633_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
69280	chr18	-	604	3	FSM	ENSMUSG00000024346.7	ENSMUST00000237792.2	1024	3	13	407	13	122	multi-exon	FALSE	canonical	3	64	junction_1	1494	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATGTGCTTTTCTCCAC	NA	False	NA	NA	False	NA	NA	NA	36587564	36537135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_36537514_36584132_36584300_36587505
69281	chr17	-	883	5	NIC	ENSMUSG00000025732.7	novel	842	5	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	117.099049953448	425	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7769	False	NA	NA	False	NA	NA	NA	26087731	26082671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26083014_26083176_26083327_26083567_26083696_26087387_26087518_26087598
69284	chr1	+	469	11	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_2	1904.37666704883	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160862765_160863321_160863375_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
69285	chr17	-	428	2	ISM	ENSMUSG00000024309.16	ENSMUST00000173363.8	871	3	531	-4	531	0	intron_retention	FALSE	canonical	3	1067	junction_1	0	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	34158747	34157892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34158086_34158512
69286	chr1	+	1106	5	Fusion	ENSMUSG00000026548.5_ENSMUSG00000103357.2	novel	1313	4	NA	NA	2	-166	multi-exon	FALSE	canonical	0	0	junction_1	2.1650635094611	39	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCACCGTGCTTGATGC	NA	False	NA	NA	False	NA	NA	NA	172286137	172305976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_172286190_172303017_172303107_172303699_172304042_172304772_172305046_172305626
69287	chr8	-	2420	3	Antisense	novelGene_ENSMUSG00000110427.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	6	56	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTAAAGTTGCTCACCC	NA	False	NA	NA	False	NA	NA	NA	96237659	96225650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_96227532_96235132_96235243_96237230
69289	chr8	+	992	1	FSM	ENSMUSG00000100691.2	ENSMUST00000191396.2	1009	1	-43	60	-43	-60	mono-exon	FALSE	NA	NA	NA	NA	NA	226	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTGCTTTTAATCATTGA	2282	False	NA	NA	False	NA	NA	NA	71229415	71230407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71229400_71230400
69290	chr5	-	528	1	Antisense	novelGene_ENSMUSG00000029203.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTCTGTTGTGAAGGTA	NA	False	NA	NA	False	NA	NA	NA	65728065	65727537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_65727500_65728100
69291	chr10	-	1108	4	NNC	ENSMUSG00000025358.17	novel	2406	8	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	535.620719871399	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8244	False	NA	NA	False	NA	NA	NA	128540903	128533812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128534450_128539626_128539697_128539794_128539873_128540580
69292	chr6	-	2595	1	ISM	ENSMUSG00000037172.15	ENSMUST00000101492.10	6742	9	32166	0	27439	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTGCTGTGATCTTT	NA	False	NA	NA	False	NA	NA	NA	40380903	40378308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_40378300_40380900
69293	chr16	-	711	4	NNC	ENSMUSG00000022706.17	novel	1280	4	NA	NA	14	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	861.302889038848	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATCTGTCTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	18695275	18690969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18691413_18692286_18692446_18694073_18694128_18695220
69294	chr3	-	1324	10	FSM	ENSMUSG00000027938.12	ENSMUST00000107369.2	1404	10	70	10	70	-10	multi-exon	TRUE	canonical	2	4	junction_7	1.89215404065849	52	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAATTCTATCCCAAGTT	NA	False	NA	NA	False	NA	NA	NA	90150380	90144886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90145229_90145356_90145454_90145618_90145704_90145789_90145859_90145951_90146059_90146190_90146287_90149238_90149361_90149517_90149753_90150028_90150144_90150324
69296	chr2	+	801	1	Intergenic	novelGene_2581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTCAAAGCTTAAATTGA	NA	False	NA	NA	False	NA	NA	NA	24857313	24858114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_24857300_24858100
69297	chr1	+	822	6	NNC	ENSMUSG00000025933.16	novel	1168	5	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	36.1054012579835	96	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCTCATTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	21288891	21300389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299814_21300055_21300305
69298	chr9	-	1566	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_5	9.17823512446701	58	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGCGCTGTCTCATCA	NA	False	NA	NA	False	NA	NA	NA	34901115	34889335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34900971
69299	chr3	-	1227	8	FSM	ENSMUSG00000004035.13	ENSMUST00000004137.11	1377	8	150	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.49897938350513	37	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTTTGGTCGG	NA	False	NA	NA	False	NA	NA	NA	107838983	107833649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838934
69300	chr4	-	594	1	Intergenic	novelGene_1996	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCACTCCTTACAGCTCC	NA	False	NA	NA	False	NA	NA	NA	139032915	139032321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_139032300_139032900
69302	chr4	-	1527	1	ISM	ENSMUSG00000039298.17	ENSMUST00000144099.8	11847	37	192047	14	25456	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	11	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGCAATATAAAACAAGTC	NA	False	NA	NA	False	NA	NA	NA	70136633	70135106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_70135100_70136600
69304	chr14	-	1017	6	NNC	ENSMUSG00000022108.9	novel	1796	6	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	317.900235923159	12	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAACCTTTCTTTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	73622698	73600324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_73600584_73601981_73602133_73603191_73603268_73603814_73603968_73605738_73605868_73622449
69305	chr10	+	965	7	Intergenic	novelGene_3550	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_6	35.7568952169446	1	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATTACAAGCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	120359452	120372836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120359477_120360126_120360189_120363521_120363638_120364338_120364520_120369971_120370079_120370224_120370315_120372451
69306	chr1	+	1866	4	FSM	ENSMUSG00000026255.16	ENSMUST00000027472.7	1854	4	-14	2	-14	1	multi-exon	FALSE	canonical	3	11	junction_2	0.942809041582063	31	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACCAGTGTGCCTTTTTG	1394	False	NA	NA	False	NA	NA	NA	87192070	87238559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382
69307	chr4	-	924	3	FSM	ENSMUSG00000044303.7	ENSMUST00000107131.2	895	3	41	-70	41	0	multi-exon	FALSE	canonical	2	3	junction_2	1	256	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATTTTTAGCATAGAAAT	NA	False	NA	NA	False	NA	NA	NA	89212849	89192707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_89193012_89194881_89195223_89212570
69308	chr4	+	1237	1	NIC	ENSMUSG00000028289.13	novel	2880	10	NA	NA	6201	1667	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAATGTTTCTCACATA	6032	False	NA	NA	False	NA	NA	NA	28821629	28822866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_28821600_28822900
69309	chr18	-	1876	1	Antisense	novelGene_ENSMUSG00000025421.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCGCGCTGCCATCCTTC	6588	False	NA	NA	False	NA	NA	NA	77040709	77038833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77038800_77040700
69310	chr9	+	1082	3	Antisense	novelGene_ENSMUSG00000086158.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGGCAGCCCGTCTCCG	NA	False	NA	NA	False	NA	NA	NA	72887005	72892617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_72887478_72891079_72891237_72892164
69313	chr10	-	697	1	Intergenic	novelGene_3438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGATTTTAACAAAATTTGT	NA	False	NA	NA	False	NA	NA	NA	57981664	57980967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_57981000_57981700
69315	chr8	-	2615	3	FSM	ENSMUSG00000034308.14	ENSMUST00000173522.8	2615	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	6	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTGGGTTAAATATTCA	NA	False	NA	NA	False	NA	NA	NA	118400428	118388140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_118390572_118391725_118391820_118400338
69316	chr16	+	1771	1	FSM	ENSMUSG00000034379.10	ENSMUST00000042203.10	2739	1	1	967	1	-967	mono-exon	FALSE	NA	NA	NA	NA	NA	20	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTTGTTCTATGAATGA	4379	False	NA	NA	False	NA	NA	NA	35861560	35863331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_35861600_35863300
69317	chr10	+	2960	20	FSM	ENSMUSG00000025432.12	ENSMUST00000026500.12	3033	20	64	9	34	-9	multi-exon	TRUE	canonical	0	0	junction_1	0.635949788083925	4	25	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCTTATGGTGGCTGTA	NA	False	NA	NA	False	NA	NA	NA	126836641	126856854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126836701_126839234_126839320_126840565_126840641_126842363_126842561_126843409_126843519_126843608_126843720_126844000_126844204_126844631_126844711_126844829_126844929_126845597_126845752_126845845_126845947_126846390_126846529_126846769_126846929_126847567_126847748_126849376_126849523_126849967_126850113_126852178_126852368_126852832_126852902_126854254_126854381_126856318
69318	chr17	+	719	1	Intergenic	novelGene_124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAAAATGAAGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	32028722	32029441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_32028700_32029400
69319	chr11	+	907	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	-10	50	-10	-50	multi-exon	FALSE	canonical	3	1683	junction_1	206.515536138729	3	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTTTTCCTACCACGGG	NA	False	NA	NA	False	NA	NA	NA	117740066	117746508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
69320	chr5	+	2616	17	ISM	ENSMUSG00000029716.14	ENSMUST00000198783.5	2973	18	577	15	-69	-4	3prime_fragment	FALSE	canonical	1	1	junction_5	2.24913177693082	16	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGTTGTCCATACGCAA	5109	False	NA	NA	False	NA	NA	NA	137569643	137585723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_137569786_137569875_137570054_137572648_137572790_137572869_137572982_137573075_137573199_137575719_137575837_137575927_137576068_137577140_137577305_137578428_137578549_137580850_137580934_137581019_137581084_137581180_137581249_137581335_137581413_137581492_137581578_137581666_137581895_137582187_137582329_137585090
69321	chr2	-	1467	1	ISM	ENSMUSG00000050592.9	ENSMUST00000056406.7	4107	2	15446	4	11015	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	23	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCACCCTTGGCTCTGGTGG	NA	False	NA	NA	False	NA	NA	NA	31958349	31956882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_31956900_31958300
69322	chr19	+	1700	8	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46124	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	55.0139128970563	11	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGTGCCAAGTCTGTCGT	NA	False	NA	NA	False	NA	NA	NA	46807974	46867019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46808062_46808187_46808322_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46865646_46865832_46866271
69323	chr13	+	951	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	-22	-43	0	-27	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCATAAATAAATATTCATA	NA	False	NA	NA	False	NA	NA	NA	62245561	62259834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
69325	chrX	-	1969	1	ISM	ENSMUSG00000031012.18	ENSMUST00000156096.8	7707	24	266963	19	7701	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	9	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATGTATAAAACATGAAAAG	NA	False	NA	NA	False	NA	NA	NA	13385306	13383337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_13383300_13385300
69326	SIRV6	+	787	3	NNC	SIRV6A	novel	783	3	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	11549	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGATGACTATGGGGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	10237	11319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_10819_11031_11114_11195
69327	chrX	+	805	8	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	13	901	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	282.50280836603	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGAGTTCCTTCAACCC	212	False	NA	NA	False	NA	NA	NA	73356651	73362472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359115_73361242_73361310_73361747_73361810_73361973_73362051_73362420
69328	chr9	+	613	3	NIC	ENSMUSG00000032383.8	novel	3305	4	NA	NA	-3	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1268.5	109	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCTTGGGTGTGGGCTG	1571	False	NA	NA	False	NA	NA	NA	65967509	65973902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65967683_65968748_65968863_65973576
69329	chr7	+	1102	2	FSM	ENSMUSG00000059824.13	ENSMUST00000210120.2	815	2	-28	-259	-28	41	multi-exon	FALSE	canonical	3	63	junction_1	0	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTGTTGTGGCGGACA	NA	False	NA	NA	False	NA	NA	NA	45357284	45359579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45357896_45359088
69330	chr1	-	2241	11	FSM	ENSMUSG00000026637.15	ENSMUST00000195815.3	2214	11	-25	-2	-25	0	multi-exon	FALSE	canonical	1	2	junction_6	1.02469507659596	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGGGGCTCCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	191776893	191729165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_191729969_191731758_191731928_191733717_191733859_191738764_191738858_191741554_191741630_191742389_191742468_191743409_191743575_191746941_191747044_191751193_191751252_191754716_191754936_191776555
69331	chr5	+	1400	3	NNC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-516	29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	60	30	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTAAAAAGTGGGAGT	101	False	NA	NA	False	NA	NA	NA	37242197	37249402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_37242403_37242579_37242843_37248470
69333	chr15	+	488	4	NNC	ENSMUSG00000022354.5	novel	704	4	NA	NA	-4	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1663.37995926634	105	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGCCTGAAGTGTTCT	2864	False	NA	NA	False	NA	NA	NA	58805652	58811340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_58805788_58808116_58808178_58809239_58809315_58811123
69334	chr8	+	927	1	NIC	ENSMUSG00000033545.15	novel	4600	6	NA	NA	13457	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTACAAAAATGTT	NA	False	NA	NA	False	NA	NA	NA	112349384	112350311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_112349400_112350300
69337	chr3	+	1257	6	ISM	ENSMUSG00000027552.15	ENSMUST00000165922.3	1751	8	9492	8	9492	-8	3prime_fragment	FALSE	non_canonical	0	0	junction_1	85.3243224409078	81	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTTTATTGATCTTTGG	3386	False	NA	NA	False	NA	NA	NA	14653222	14671360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_14653362_14666059_14666107_14667707_14667773_14668697_14668966_14670184_14670230_14670667
69339	chr17	-	2073	17	NNC	ENSMUSG00000058626.17	novel	2591	22	NA	NA	16309	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2.12775556631865	16	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAATAAAGAGGACAAGGT	NA	False	NA	NA	False	NA	NA	NA	45953914	45941151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45941538_45941651_45941711_45942713_45942828_45942934_45943014_45943306_45943376_45943624_45943690_45943800_45943859_45943965_45944032_45944294_45944335_45944697_45944921_45949620_45949797_45949994_45950159_45950335_45950411_45950548_45950635_45950728_45950813_45953393_45953563_45953754
69341	chr11	+	1642	5	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	105	-242	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	2.95803989154981	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAAAACTGCAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	22958569	22973482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22958627_22965654_22965885_22969999_22971134_22971493_22971662_22973429
69346	chr18	+	962	6	NIC	ENSMUSG00000024537.6	novel	1059	7	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	172.967048885041	13	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	67774644	67787232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786955
69347	chr2	+	1080	8	ISM	ENSMUSG00000019188.17	ENSMUST00000089059.9	1743	13	19374	4	-2977	-4	3prime_fragment	FALSE	canonical	3	19	junction_6	57.2933731966001	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGGGAGCTCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	152530781	152546952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152545914_152546115_152546541
69348	chr14	+	428	1	Antisense	novelGene_ENSMUSG00000021273.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAATGACAGGTAAATGG	NA	False	NA	NA	False	NA	NA	NA	63383851	63384279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_63383900_63384300
69350	chr9	+	883	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	3	6	3	-6	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	10	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATAGCTTGGGTGTGGG	1577	False	NA	NA	False	NA	NA	NA	65967515	65973899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
69351	chr8	+	1524	1	Intergenic	novelGene_1722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAGCACTTTGGATAAAA	NA	False	NA	NA	False	NA	NA	NA	107578338	107579862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_107578300_107579900
69352	chrX	+	1468	9	NNC	ENSMUSG00000009995.18	novel	1742	9	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	105.848653746753	1	79	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCACCATACCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	73326366	73333746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73326472_73326877_73327007_73327253_73327296_73327537_73327624_73331624_73331706_73331783_73331826_73332056_73332120_73332710_73332789_73332904
69354	chr17	-	733	4	NNC	ENSMUSG00000034868.10	novel	2143	4	NA	NA	14	67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	927.784817005897	26	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGATGCTGACTCAAG	3418	False	NA	NA	False	NA	NA	NA	71297511	71280953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_71281282_71282453_71282616_71284042_71284242_71297467
69355	chr4	-	3059	6	FSM	ENSMUSG00000037731.6	ENSMUST00000045154.6	3079	6	13	7	13	-7	multi-exon	FALSE	canonical	0	0	junction_1	1.16619037896906	4	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGAGTGAAATGTCTTG	9925	False	NA	NA	False	NA	NA	NA	132523685	132509160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132510317_132510658_132510810_132512493_132513582_132516855_132517264_132519788_132519930_132523570
69356	chr11	+	1948	7	ISM	ENSMUSG00000020836.16	ENSMUST00000052515.12	1476	9	2362	-873	2287	-10	3prime_fragment	FALSE	canonical	1	1	junction_5	2.16024689946929	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAATGCATCTGGTTTGA	7750	False	NA	NA	False	NA	NA	NA	77357023	77361300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_77357151_77357243_77357426_77359091_77359197_77359286_77359433_77359735_77359794_77359882_77360114_77360201
69359	chr9	+	1369	3	FSM	ENSMUSG00000096981.3	ENSMUST00000180419.2	1415	3	44	2	44	-2	multi-exon	FALSE	canonical	0	0	junction_1	1	32	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTGAATTCATCTATGTG	NA	False	NA	NA	False	NA	NA	NA	21982371	21997416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21982461_21987545_21987648_21996238
69360	chr2	+	388	1	Intergenic	novelGene_2754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCCCCACTCCTTCTAG	NA	False	NA	NA	False	NA	NA	NA	156668700	156669088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_156668700_156669100
69361	chr12	-	229	1	Intergenic	novelGene_4430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATACATCTTTATAGCA	NA	False	NA	NA	False	NA	NA	NA	85572172	85571943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_85571900_85572200
69364	chr13	+	589	1	FSM	ENSMUSG00000021474.10	ENSMUST00000223504.2	3929	1	2013	1327	2013	-1327	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCTTGGTAGACATGTT	NA	False	NA	NA	False	NA	NA	NA	54241977	54242566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54242000_54242600
69366	chr14	-	3071	18	ISM	ENSMUSG00000019027.9	ENSMUST00000048603.8	12872	78	54373	1143	-12	474	internal_fragment	FALSE	canonical	0	0	junction_2	1.23389276255312	5	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCGACACCATCACCTTT	9869	False	NA	NA	False	NA	NA	NA	30991480	30983474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_30983798_30984109_30984241_30984369_30984541_30985075_30985253_30985324_30985505_30985806_30985978_30986271_30986404_30986479_30986639_30986867_30987013_30987219_30987417_30987835_30987988_30988271_30988468_30988596_30988823_30989411_30989573_30989668_30989819_30989942_30990063_30990741_30990868_30991326
69368	chr19	-	439	2	NNC	ENSMUSG00000035885.6	novel	550	2	NA	NA	-32	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGCTCCAGAAATGCATC	7407	False	NA	NA	False	NA	NA	NA	7194940	7192531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7192815_7194784
69370	chrX	+	730	4	FSM	ENSMUSG00000062170.13	ENSMUST00000114647.8	679	4	-60	9	-18	-9	multi-exon	FALSE	canonical	3	331	junction_1	201.191451110627	133	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCAGAATCTGGATTCTT	NA	False	NA	NA	False	NA	NA	NA	67805426	67848164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_67805838_67815650_67815748_67847210_67847300_67848031
69371	chr16	-	967	1	ISM	ENSMUSG00000035356.18	ENSMUST00000114458.8	3627	12	9791	6	6168	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGTGTTTTTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	55632710	55631743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_55631700_55632700
69372	chr4	-	2187	2	Antisense	novelGene_ENSMUSG00000066152.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACCGCGCCCTGGCCACG	NA	False	NA	NA	False	NA	NA	NA	62209817	62204696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_62205132_62208065
69373	chr4	-	2647	4	FSM	ENSMUSG00000025418.8	ENSMUST00000054472.4	2756	4	24	85	24	-85	multi-exon	FALSE	canonical	2	6	junction_2	0.942809041582063	14	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGCAAGGACTGACTGTG	NA	False	NA	NA	False	NA	NA	NA	106349456	106340737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_106342643_106343780_106344036_106345175_106345268_106349061
69374	chr3	+	1170	12	FSM	ENSMUSG00000028013.17	ENSMUST00000029644.16	1226	12	47	9	35	2	multi-exon	TRUE	canonical	3	471	junction_4	36.8801946894343	381	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGAACTTCTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	133015917	133083830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083607
69376	chr17	-	1371	11	NNC	ENSMUSG00000000673.10	novel	1381	10	NA	NA	-337	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.89736659610103	22	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGTACTTGCGAGTTT	6658	False	NA	NA	False	NA	NA	NA	84154578	84138785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_84139151_84139255_84139339_84139755_84139825_84142207_84142354_84142619_84142664_84142903_84142994_84145900_84146008_84146229_84146314_84150624_84150704_84154065_84154252_84154460
69377	chr8	-	2874	9	ISM	ENSMUSG00000006567.12	ENSMUST00000006742.11	6505	21	53871	490	53585	-490	3prime_fragment	FALSE	canonical	1	2	junction_1	4.29389100932942	4	63	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGAAGGCCTTTCTGTAAT	NA	False	NA	NA	False	NA	NA	NA	22496450	22483290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_22484941_22485569_22485673_22487301_22487420_22487498_22487703_22488240_22488384_22490064_22490209_22492723_22492878_22494208_22494392_22496275
69379	chrX	+	647	4	NNC	ENSMUSG00000086316.9	novel	788	4	NA	NA	9	13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	74.4595341257399	3	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTGTCTTATGGCAG	NA	False	NA	NA	False	NA	NA	NA	152506631	152524273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_152506826_152508700_152508838_152511857_152511936_152524035
69381	chr5	-	1270	5	Antisense	novelGene_ENSMUSG00000029651.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_2	4.55521678957215	174	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGGTAGTATACTCTTTC	8597	False	NA	NA	False	NA	NA	NA	147949136	147941084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_147941718_147942673_147942827_147943327_147943469_147943860_147944081_147949013
69383	chr11	+	559	3	FSM	ENSMUSG00000070394.11	ENSMUST00000156556.2	387	3	-4	-168	-4	2	multi-exon	FALSE	canonical	3	1210	junction_1	148.5	5679	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTGGTGTCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	69729376	69730441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69729476_69729745_69729778_69730013
69384	chr8	+	787	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	-43	-31	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	137.767920794356	878	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATATAATAAAGCTCATAT	NA	False	NA	NA	False	NA	NA	NA	80438405	80501940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80455758_80455880_80501560
69385	chr7	+	777	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	4	4	4	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	867	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCTGTGCAGTGCTTAT	511	False	NA	NA	False	NA	NA	NA	19242640	19250066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
69388	chr2	+	2384	1	Genic_Intron	novelGene_2554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTACCTTCTCCTCCTCCTC	2801	False	NA	NA	False	NA	NA	NA	3445292	3447676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Intron_chr2_+_3445300_3447700
69389	chr6	+	637	1	Intergenic	novelGene_4259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGAGTTTGGGGTAGCCT	NA	False	NA	NA	False	NA	NA	NA	128221194	128221831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_128221200_128221800
69390	chr6	-	2401	18	NNC	ENSMUSG00000029822.16	novel	3307	22	NA	NA	20	-9162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5.00864304880188	1	89	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTCTGGGGTAAATCCA	NA	False	NA	NA	False	NA	NA	NA	50433121	50286355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_50286372_50289611_50289676_50297016_50297155_50299952_50300204_50304358_50304449_50305649_50305785_50313194_50313326_50321853_50322011_50322990_50323084_50323307_50323412_50324345_50324470_50324950_50325119_50328823_50328938_50329763_50329818_50329964_50330082_50347102_50347339_50405308_50405401_50432804
69391	chr7	-	572	4	FSM	ENSMUSG00000089661.10	ENSMUST00000121848.2	572	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	588	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTGTCTCTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	26880582	26879168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
69393	chr1	+	1309	3	Antisense	novelGene_ENSMUSG00000088559.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCATATATACAGATCAT	9211	False	NA	NA	False	NA	NA	NA	184545979	184555592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_184546081_184551397_184551545_184554531
69394	chr14	-	662	1	ISM	ENSMUSG00000007989.8	ENSMUST00000131309.3	12734	7	69103	250	34736	-250	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTACTGTTGTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	65430809	65430147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_65430100_65430800
69395	chr11	+	1524	2	NIC	ENSMUSG00000020803.4	novel	981	4	NA	NA	30	-238	intron_retention	FALSE	canonical	3	1302	junction_1	0	16	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATACAAACCATTAAGTT	NA	False	NA	NA	False	NA	NA	NA	72098470	72100603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72099632_72100240
69396	chr7	+	1543	4	NIC	ENSMUSG00000047473.15	novel	3707	4	NA	NA	0	-2120	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	6.97614984548545	17	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTATGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	29483447	29489217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29484327_29485643_29485729_29487473_29487601_29488765
69397	chr9	-	763	1	Intergenic	novelGene_1133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGGGCTGGGACCCCT	NA	False	NA	NA	False	NA	NA	NA	96185116	96184353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_96184400_96185100
69398	chr9	-	3026	1	Intergenic	novelGene_1009	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATAAACATTTGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32085388	32082362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_32082400_32085400
69399	chr15	+	2575	6	ISM	ENSMUSG00000018008.9	ENSMUST00000043069.6	2791	13	13891	26	-295	-26	3prime_fragment	FALSE	canonical	0	0	junction_1	0	6	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCATGACGTCGCTCGT	1262	False	NA	NA	False	NA	NA	NA	78495137	78506193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78495798_78499916_78500029_78502575_78502653_78503461_78503534_78503988_78504144_78504694
69400	chr4	+	639	4	NNC	ENSMUSG00000029038.10	novel	874	4	NA	NA	38	-73	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	821.532849143735	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAGTTAAATAAACACAT	NA	False	NA	NA	False	NA	NA	NA	155789629	155816573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155789795_155799918_155800063_155815781_155815922_155816383
69401	chr4	+	3012	23	ISM	ENSMUSG00000028862.7	ENSMUST00000030677.7	4334	29	4761	4	-1623	-3	3prime_fragment	FALSE	canonical	3	8	junction_1	4.77337657920912	3	107	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGCTTGTCTTGGCAAC	550	False	NA	NA	False	NA	NA	NA	132972889	132980236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_132972988_132973088_132973202_132973568_132973729_132973940_132974104_132974185_132974294_132974390_132974441_132974512_132974609_132974724_132974813_132974891_132975026_132975323_132975452_132975698_132975836_132976102_132976209_132976972_132977131_132977240_132977434_132977518_132977658_132977959_132978117_132978234_132978412_132978652_132978759_132978921_132979085_132979169_132979283_132979365_132979440_132979710_132979788_132979962
69402	chr7	-	1239	12	FSM	ENSMUSG00000030742.8	ENSMUST00000032997.8	1235	12	-4	0	3	0	multi-exon	FALSE	canonical	3	34	junction_9	5.32264769756525	66	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	125968710	125962998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
69403	chr5	-	744	6	NNC	ENSMUSG00000039737.12	novel	3893	6	NA	NA	6	-4373	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	212.919327445866	27	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCCAAATGGGCTGCAC	NA	False	NA	NA	False	NA	NA	NA	136227811	136214653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_136214881_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
69405	chr1	-	1093	6	ISM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	29	9098	29	5304	5prime_fragment	FALSE	canonical	3	704	junction_1	55.2716925740473	4	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATAAGAGTTCATGTTCA	821	False	NA	NA	False	NA	NA	NA	175453172	175437037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
69407	chr19	+	628	2	Intergenic	novelGene_1194	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAAGGGGATTTATCTG	3454	False	NA	NA	False	NA	NA	NA	5092105	5094245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_5092292_5093803
69408	chr17	-	854	6	FSM	ENSMUSG00000096727.4	ENSMUST00000174576.4	1352	6	444	54	18	0	multi-exon	FALSE	canonical	2	4	junction_1	3.70944739819828	57	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATCATTAGTTGCA	NA	False	NA	NA	False	NA	NA	NA	34406294	34401014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34401326_34402062_34402205_34402588_34402719_34403255_34403388_34404703_34404772_34406223
69409	chr17	+	1202	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	-6	15	-6	-15	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATGCAGCCTGAGCCG	NA	False	NA	NA	False	NA	NA	NA	24955649	24961730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
69410	chr11	+	1324	5	Fusion	ENSMUSG00000078706.5_ENSMUSG00000020875.10	novel	1172	3	NA	NA	-115	-1419	multi-exon	FALSE	canonical	1	1	junction_4	9.2736184954957	5	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGCTAATTTTTCTGGA	8699	False	NA	NA	False	NA	NA	NA	96142354	96166002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_96142640_96152437_96152590_96154999_96155212_96155549_96155672_96165449
69411	chr7	-	2100	1	Antisense	novelGene_ENSMUSG00000030522.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGCGATGCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	63949359	63947259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_63947300_63949400
69412	chrX	-	461	4	NNC	ENSMUSG00000079641.4	novel	612	3	NA	NA	-12	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6090.07500409934	4	10	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCTTTCAAAATGCTTT	NA	False	NA	NA	False	NA	NA	NA	36348831	36346221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36346403_36347207_36347330_36347637_36347742_36348777
69413	chr15	-	702	4	NNC	ENSMUSG00000022247.13	novel	2664	10	NA	NA	8	-1413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1094.42506469023	1	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTAACTCACCAGCTACT	NA	False	NA	NA	False	NA	NA	NA	10485987	10476277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_10476683_10476892_10476955_10483424_10483493_10485820
69414	chr5	+	1904	1	ISM	ENSMUSG00000041930.8	ENSMUST00000043650.8	2930	3	43295	6	43294	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	21	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGATGGTGTCTCAGCTG	NA	False	NA	NA	False	NA	NA	NA	114749371	114751275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_114749400_114751300
69416	chr19	-	731	6	ISM	ENSMUSG00000071604.6	ENSMUST00000096164.6	2548	11	42443	5215	-12141	-4753	internal_fragment	FALSE	canonical	3	34	junction_1	10.0518654985033	1	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGATGTCACTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	23965940	23955328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_23955479_23956753_23956833_23956949_23957080_23962072_23962207_23963772_23963881_23965810
69417	chr17	-	2558	1	NIC	ENSMUSG00000094441.3	novel	3544	4	NA	NA	76	-12794	mono-exon	FALSE	NA	NA	NA	NA	NA	3	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCTCTAAGCTCAAGCC	NA	False	NA	NA	False	NA	NA	NA	33474043	33471485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_33471500_33474000
69418	chr10	+	2139	1	Intergenic	novelGene_3455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCTGTTTCAGGTTCT	7034	False	NA	NA	False	NA	NA	NA	62658753	62660892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_62658800_62660900
69420	chr4	+	551	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-4081	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	142.015844186485	1	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATGACTCTGTAAACAGT	1855	False	NA	NA	False	NA	NA	NA	146516840	146550668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146533486_146533533_146547961_146548024_146548860_146548951_146550460
69421	chrX	+	470	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	7	349	7	-305	multi-exon	FALSE	canonical	3	533	junction_2	2270	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGTCTAACCACCACGAT	NA	False	NA	NA	False	NA	NA	NA	135171060	135172364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_135171151_135171558_135171632_135172057
69422	chrX	-	2176	1	Antisense	novelGene_ENSMUSG00000008035.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGAATCACCCCATCGC	NA	False	NA	NA	False	NA	NA	NA	10583437	10581261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_10581300_10583400
69423	chr7	-	2469	3	Antisense	novelGene_ENSMUSG00000108678.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGCGAGCCGGGAGGCC	NA	False	NA	NA	False	NA	NA	NA	73068816	73041045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_73041243_73058977_73059496_73067062
69425	chr14	+	2056	2	FSM	ENSMUSG00000044461.7	ENSMUST00000053949.7	3119	2	1050	13	-831	-13	multi-exon	TRUE	canonical	3	42	junction_1	0	24	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTGTGAATTCTTCG	NA	False	NA	NA	False	NA	NA	NA	59863806	59869096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_59863850_59867083
69426	chr3	+	1087	1	NIC	ENSMUSG00000027940.19	novel	1139	10	NA	NA	974	-11	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCCAGAAGCCTCACGG	NA	False	NA	NA	False	NA	NA	NA	89998339	89999426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89998300_89999400
69427	chr9	+	1405	8	ISM	ENSMUSG00000046603.17	ENSMUST00000052740.14	3049	11	2	9068	2	-9061	5prime_fragment	FALSE	canonical	3	16	junction_4	5.37188447913233	13	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACACTTGAGTCTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	122634605	122656331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911
69428	chr7	-	1080	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	-24	73	-24	-73	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	108	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTGATCTCTAATTAT	NA	False	NA	NA	False	NA	NA	NA	68398960	68391331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
69429	chr4	-	1148	3	NNC	ENSMUSG00000085085.3	novel	1009	2	NA	NA	3	5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	2	52	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATGACTTACACTTCTT	NA	False	NA	NA	False	NA	NA	NA	128951773	128943884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_128944703_128944860_128944998_128951580
69430	chr2	+	1413	5	FSM	ENSMUSG00000036186.6	ENSMUST00000074240.4	1622	5	205	4	168	-4	multi-exon	FALSE	canonical	3	50	junction_4	8.55496931613434	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACCCGGGTATGTGGATC	2640	False	NA	NA	False	NA	NA	NA	26518673	26526505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26518712_26522615_26522751_26524799_26524908_26524998_26525176_26525550
69431	chr2	+	831	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-34389	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.9844427636972	137	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTGTACCCTGGACAAG	5311	False	NA	NA	False	NA	NA	NA	29352133	29414786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29352235_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
69433	chr19	-	587	6	NNC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1420.32221696346	4	24	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	NA	NA	NA	4092236	4090284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4090540_4090707_4090775_4091435_4091486_4091583_4091691_4091902_4091939_4092164
69434	chr2	-	426	1	Intergenic	novelGene_2807	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTAACCATCTGTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	169877425	169876999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_169877000_169877400
69435	chr3	-	842	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	305	2	NA	NA	0	0	multi-exon	FALSE	canonical	3	51	junction_3	13.2748718344933	135	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	NA	False	NA	NA	NA	41447627	41432011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41447522
69437	chr2	-	704	3	FSM	ENSMUSG00000036504.7	ENSMUST00000147096.2	656	3	27	-75	27	3	multi-exon	FALSE	canonical	3	48	junction_2	365.5	43	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTGTCTTGCCTT	5573	False	NA	NA	False	NA	NA	NA	25464863	25463438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25463712_25464199_25464462_25464694
69438	chr12	-	629	5	Intergenic	novelGene_4474	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2.95803989154981	64	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGGGGGCACATCAGGA	NA	False	NA	NA	False	NA	NA	NA	110253362	110249712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_110249896_110250719_110250838_110250953_110251025_110252234_110252424_110253294
69439	chr4	+	865	5	NIC	ENSMUSG00000028461.13	novel	817	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	301	junction_4	17.5071414000116	469	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	2	True	NA	NA	False	NA	NA	NA	43493389	43495921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495622_43495696
69440	chr4	+	579	5	FSM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	-53	-2	-53	0	multi-exon	FALSE	canonical	3	128	junction_1	133.401649165218	670	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGTTTTGGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	3938834	3943525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720_3942820_3943387
69441	chr4	+	2069	2	NNC	ENSMUSG00000028865.15	novel	701	6	NA	NA	-2755	-9273	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAAGCCCCCGCGGCCGC	NA	False	NA	NA	False	NA	NA	NA	132936686	132939808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132938678_132939730
69442	chr7	-	713	5	NIC	ENSMUSG00000003380.12	novel	899	5	NA	NA	27	1	combination_of_known_junctions	FALSE	canonical	2	23	junction_1	304.184462949704	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTTCCTGGTATTTTCT	4	True	NA	NA	False	NA	NA	NA	24672036	24669175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_24669391_24669511_24669614_24671185_24671284_24671526_24671740_24671951
69443	chr10	-	801	3	NNC	ENSMUSG00000001666.9	novel	649	3	NA	NA	17	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	243	153	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATCATTCAAACATGACT	NA	False	NA	NA	False	NA	NA	NA	75609231	75607076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75607341_75608571_75608927_75609049
69444	chr17	-	754	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	-14	2	-14	0	multi-exon	FALSE	canonical	3	586	junction_1	61.9157133170212	1525	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	37269388	37265249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
69445	chr5	+	1516	9	NNC	ENSMUSG00000029089.9	novel	1616	9	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	43.9630526692585	1	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	NA	False	NA	NA	NA	48529710	48546187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48539128_48539210_48541730_48541779_48545444
69447	chr3	+	565	6	NNC	ENSMUSG00000027680.16	novel	2127	15	NA	NA	-9	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	514.352641676895	76	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGTTATTTTGTTTTC	4840	False	NA	NA	False	NA	NA	NA	34074237	34123489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100713_34123345
69449	chr8	+	1268	2	FSM	ENSMUSG00000109523.2	ENSMUST00000207684.2	1349	2	76	5	76	-5	multi-exon	FALSE	canonical	3	32	junction_1	0	7	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCATTGCGTTGGCGCAG	5194	False	NA	NA	False	NA	NA	NA	70782542	70784232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70782927_70783348
69450	chr11	+	890	8	NNC	ENSMUSG00000040463.17	novel	4448	25	NA	NA	-7	-443	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	944.886754903378	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTGTCGTCTTCCCATG	NA	False	NA	NA	False	NA	NA	NA	72332195	72334946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334451_72334680_72334735_72334828
69451	chr12	-	1008	1	Intergenic	novelGene_4469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGCAATTACTTACACCT	NA	False	NA	NA	False	NA	NA	NA	109573801	109572793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_109572800_109573800
69453	chr1	+	2898	1	Intergenic	novelGene_504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	83	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCACATACATGCATGCAT	NA	False	NA	NA	False	NA	NA	NA	192296207	192299105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_192296200_192299100
69454	chr11	-	768	3	ISM	ENSMUSG00000020799.17	ENSMUST00000108502.8	1403	8	9045	103	9045	-96	3prime_fragment	FALSE	canonical	3	52	junction_1	2	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAGACGGCGACGACCATG	NA	False	NA	NA	False	NA	NA	NA	72243077	72235650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_72235798_72236411_72236609_72242653
69456	chr11	+	584	3	FSM	ENSMUSG00000069919.8	ENSMUST00000093209.4	699	3	130	-15	130	15	multi-exon	FALSE	canonical	1	2	junction_2	1	24	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAAGCCTGCATGCCTGG	7127	False	NA	NA	False	NA	NA	NA	32233640	32234480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_32233802_32233923_32234129_32234262
69459	chr5	+	1108	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	87	2734	10	472	multi-exon	FALSE	canonical	3	312	junction_1	122	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACCCCCATGATCAACAAA	4978	False	NA	NA	False	NA	NA	NA	105848741	105960342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_105848952_105880095_105880241_105959589
69460	chr2	-	1093	11	NNC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	15	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	444.78993918478	3	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGCCTACTGTGATGGTT	NA	False	NA	NA	False	NA	NA	NA	5849737	5799473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828017_5838445_5838525_5846763_5846836_5849645
69461	chr11	-	508	2	Genic_Genomic	ENSMUSG00000091478.3	novel	411	1	NA	NA	-35	111	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	8041	False	NA	NA	False	NA	NA	NA	100252987	100252430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_100252657_100252705
69462	chr1	+	1185	3	ISM	ENSMUSG00000051223.15	ENSMUST00000188630.7	1615	10	4	6782	4	-4299	5prime_fragment	FALSE	canonical	3	1727	junction_2	52.5	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTCTTTGAAAGTTTAA	895	False	NA	NA	False	NA	NA	NA	58432294	58437864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_58432376_58433360_58433435_58436834
69463	chr5	+	484	3	NNC	ENSMUSG00000106918.4	novel	478	4	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1166.5	7295	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTGTCTCTTAGAGGT	NA	False	NA	NA	False	NA	NA	NA	31771263	31779986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31771375_31773724_31773832_31779720
69464	chr11	+	868	5	NNC	ENSMUSG00000085860.2	novel	612	4	NA	NA	0	-58	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	47.7251244105241	12	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGGATTATAACCTTG	NA	False	NA	NA	False	NA	NA	NA	97489336	97513661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97489494_97500426_97500741_97505749_97505855_97509262_97509326_97513432
69465	chrX	+	754	5	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1722.54905590523	6	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473303	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483156_100491800
69466	chr12	-	526	2	Genic_Genomic	ENSMUSG00000043483.5	novel	636	1	NA	NA	30	118	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTTGGATGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96889802	96889078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_96889148_96889345
69467	chr14	+	1107	7	NIC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	11	-4	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	258.380479568837	2	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGTCTAAGCTTATGGT	NA	False	NA	NA	False	NA	NA	NA	122419126	122639635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_122419194_122548655_122548843_122608652_122608842_122615195_122615290_122616614_122616783_122621609_122621735_122639358
69469	chr18	+	824	7	FSM	ENSMUSG00000024516.14	ENSMUST00000153193.3	821	7	-3	0	-2	0	multi-exon	FALSE	canonical	0	0	junction_1	174.951818764164	3	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGCTTCCTTTTGTGGCC	NA	False	NA	NA	False	NA	NA	NA	65933639	65950731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_65933783_65934521_65934564_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
69470	chr9	+	333	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	264	-117	264	117	mono-exon	FALSE	NA	NA	NA	NA	NA	21	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGTTTAAAAAAAAAAAAAAA	292	False	NA	NA	False	NA	NA	NA	7751989	7752322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_7752000_7752300
69472	chr7	-	910	8	NIC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	-23	120	combination_of_known_junctions	FALSE	canonical	1	13	junction_7	166.611487464406	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTTTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	100256868	100198323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100256764
69474	chr7	+	539	3	NNC	ENSMUSG00000074365.14	novel	571	3	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	432	8	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	15635537	15637945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_15635663_15636774_15636933_15637689
69475	chr7	+	2409	6	NNC	ENSMUSG00000030898.16	novel	2573	5	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.76461381011511	15	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGGCTCAGATTATTCG	NA	False	NA	NA	False	NA	NA	NA	105075050	105085546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_105075083_105075133_105075383_105082789_105083042_105083201_105083452_105083726_105083903_105084096
69476	chr5	+	942	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201937.4	889	7	-51	-2	-17	0	multi-exon	FALSE	canonical	3	67	junction_1	11.9361728465293	161	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCCTGATTACAGTTAC	NA	False	NA	NA	False	NA	NA	NA	31409017	31410543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
69477	chr8	-	2173	3	Intergenic	novelGene_1721	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1	12	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGGACTTTAGAATT	NA	False	NA	NA	False	NA	NA	NA	107178089	107161402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_107163362_107166932_107167008_107177950
69478	chr8	-	1448	4	ISM	ENSMUSG00000000792.3	ENSMUST00000000809.3	2928	15	4920	17	4920	-17	3prime_fragment	FALSE	canonical	0	0	junction_2	1.4142135623731	19	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTAGGTGTTCAGATGC	NA	False	NA	NA	False	NA	NA	NA	71340481	71335549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71336613_71337564_71337681_71338673_71338799_71340337
69480	chr1	+	1781	9	NNC	ENSMUSG00000064246.11	novel	1645	10	NA	NA	303	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.04633819296811	22	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGCGCCAGAACCTAACG	1183	False	NA	NA	False	NA	NA	NA	134110522	134117751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134110548_134110970_134111440_134111861_134111919_134112886_134113038_134114242_134114365_134115607_134115732_134116232_134116416_134116934_134117052_134117218
69481	chr4	-	1648	10	NNC	ENSMUSG00000028484.17	novel	1973	11	NA	NA	218	-44	at_least_one_novel_splicesite	FALSE	canonical	3	221	junction_1	495.235746331426	8	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTGTAACGAAAATTTTAA	NA	False	NA	NA	False	NA	NA	NA	83404197	83380151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_83380657_83381831_83381951_83383161_83383388_83384944_83385021_83386819_83386914_83391276_83391340_83392514_83392620_83394518_83394658_83400693_83400771_83403953
69483	chr7	-	1294	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	9.77651506998175	121	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACAATGTGTGGATATG	NA	False	NA	NA	False	NA	NA	NA	107357193	107349170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
69484	chr4	+	888	8	FSM	ENSMUSG00000029003.12	ENSMUST00000105707.2	949	8	-27	88	-8	-88	multi-exon	FALSE	canonical	3	65	junction_6	213.795439137317	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGCTCAGCTGGCTAAC	NA	False	NA	NA	False	NA	NA	NA	148225172	148230065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229582_148229654_148229828
69485	chr2	-	1290	1	ISM	ENSMUSG00000034701.10	ENSMUST00000041099.5	2729	2	2817	124	2817	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCAAAACAATTGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	79284278	79282988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_79283000_79284300
69486	chr7	+	628	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	326	-40	14	0	multi-exon	FALSE	canonical	3	14286	junction_1	337.374503416538	1	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1649	False	NA	NA	False	NA	NA	NA	3707376	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
69487	chr13	-	1322	1	Intergenic	novelGene_1494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAATGGATTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	86202377	86201055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_86201100_86202400
69488	chr17	+	983	1	Genic_Genomic	ENSMUSG00000116802.2	novel	NA	NA	NA	NA	3007	276	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCCCAAGTATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	17485618	17486601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_17485600_17486600
69489	chr19	-	1642	1	Genic_Genomic	ENSMUSG00000118263.2	novel	NA	NA	NA	NA	-108	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	30	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGCTAAGTTCTTTACT	9092	False	NA	NA	False	NA	NA	NA	5357552	5355910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_5355900_5357600
69495	chr5	+	1868	18	ISM	ENSMUSG00000066952.12	ENSMUST00000202006.4	4631	31	27201	1275	-14673	-19	3prime_fragment	FALSE	canonical	0	0	junction_1	1.57401037179525	7	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGCTGAGACCCAGGAG	NA	False	NA	NA	False	NA	NA	NA	114480202	114501362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_114480264_114483951_114483999_114485457_114485539_114486420_114486527_114487580_114487699_114489697_114489812_114491886_114491964_114493252_114493322_114494989_114495075_114495979_114496140_114496951_114497036_114497571_114497666_114497804_114497861_114498545_114498682_114499103_114499175_114499287_114499386_114500169_114500270_114501051
69496	chr4	+	2030	5	ISM	ENSMUSG00000037692.15	ENSMUST00000105914.2	5898	6	142	14435	142	1031	5prime_fragment	FALSE	canonical	3	23	junction_2	16.768646337734	22	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACCCCGATGGTCCCCA	NA	False	NA	NA	False	NA	NA	NA	132766945	132790118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_132767098_132782323_132782515_132787986_132788204_132788337_132788376_132788686
69497	chrX	-	1438	7	ISM	ENSMUSG00000062168.13	ENSMUST00000071204.12	2483	16	81671	0	81635	0	3prime_fragment	FALSE	canonical	0	0	junction_6	0.957427107756338	2	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAATTGTTTTTTTGGAG	NA	False	NA	NA	False	NA	NA	NA	159421297	159406089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_159406700_159407559_159407645_159408672_159408837_159414850_159414958_159416189_159416333_159418003_159418190_159421154
69498	chr17	-	1079	5	FSM	ENSMUSG00000036594.16	ENSMUST00000040655.14	1128	5	31	18	-1	3	multi-exon	FALSE	canonical	2	6	junction_1	1.5	40	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTCTACTGGGTT	NA	False	NA	NA	False	NA	NA	NA	34506766	34501735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34501998_34502128_34502304_34502548_34502831_34503261_34503511_34506655
69499	chr13	-	1711	2	ISM	ENSMUSG00000052727.7	ENSMUST00000223725.2	2669	3	3084	753	-69	-753	3prime_fragment	FALSE	canonical	3	49	junction_1	0	18	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTCTCATTGCCAAGA	4621	False	NA	NA	False	NA	NA	NA	99581044	99576894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_99578283_99580721
69500	chr3	-	1420	4	ISM	ENSMUSG00000038766.17	ENSMUST00000138862.8	2323	5	167	4175	5	-732	5prime_fragment	FALSE	canonical	3	10	junction_2	8.17856276425687	10	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCATGCTTCAGGTGTGT	8943	False	NA	NA	False	NA	NA	NA	95125060	95111055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95112120_95113773_95113914_95123524_95123580_95124899
69501	chr9	-	1047	1	FSM	ENSMUSG00000094627.3	ENSMUST00000178676.3	273	1	-15	-759	-15	759	mono-exon	FALSE	NA	NA	NA	NA	NA	1	76	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGAATCTTTAATAAAG	7403	False	NA	NA	False	NA	NA	NA	22232688	22231641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22231600_22232700
69502	chr15	-	718	4	NNC	ENSMUSG00000091119.3	novel	798	9	NA	NA	2	-13118	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	8.5764535535124	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTTAGAGAAATCATTC	8098	False	NA	NA	False	NA	NA	NA	3333006	3323334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_3323404_3327582_3327689_3330586_3330676_3332552
69504	chr16	-	570	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	16	10	16	-10	multi-exon	FALSE	canonical	3	1132	junction_4	70.3491293478462	6873	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTGCATATGTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	4442836	4434337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
69505	chr1	-	3310	1	Antisense	novelGene_ENSMUSG00000050565.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	74	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTACCGCCCACGTGAC	NA	False	NA	NA	False	NA	NA	NA	155919945	155916635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_155916600_155919900
69506	chr2	+	872	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	-12	0	12	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	1131	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGTTGCCAGACATT	NA	False	NA	NA	False	NA	NA	NA	121978166	121983576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
69507	chr7	+	3029	1	Antisense	novelGene_ENSMUSG00000109115.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTCTATCTGCATACCCT	NA	False	NA	NA	False	NA	NA	NA	67330469	67333498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_67330500_67333500
69508	chr10	+	2616	1	Intergenic	novelGene_3398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	75	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTTTGGATCTCTCTA	NA	False	NA	NA	False	NA	NA	NA	13599098	13601714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_13599100_13601700
69511	chr15	-	892	7	ISM	ENSMUSG00000078937.9	ENSMUST00000109313.9	2895	19	935	5729	-457	1630	internal_fragment	FALSE	canonical	3	54	junction_5	8.71142289691465	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGACAGGTACTGGACTA	6151	False	NA	NA	False	NA	NA	NA	89309131	89306336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919
69512	chr11	-	673	4	Antisense	novelGene_ENSMUSG00000077457.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	180	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACGGCGCGTGAGCGCC	NA	False	NA	74	True	NA	NA	NA	62495633	62493702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62494107_62494420_62494471_62495226_62495291_62495478
69513	chr2	-	945	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	4	1879	3	-482	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGAGCTGTACTGTGATG	NA	False	NA	NA	False	NA	NA	NA	51039119	51022328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
69514	chr13	+	1322	8	NNC	ENSMUSG00000021518.5	novel	3424	13	NA	NA	-20693	-30419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGACGCTGCTGGGTACAG	NA	False	NA	NA	False	NA	NA	NA	67060200	67081013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_67060443_67062690_67062851_67064674_67064749_67065089_67065238_67070819_67071009_67076232_67076395_67077955_67078288_67080998
69515	chr11	-	2001	14	ISM	ENSMUSG00000041592.17	ENSMUST00000141943.2	2783	19	180590	2340	-59166	-2340	internal_fragment	FALSE	canonical	0	0	junction_2	1.46759877141069	3	51	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAGGTAGATGAGGGTCT	NA	False	NA	NA	False	NA	NA	NA	113776211	113741727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_113741838_113742527_113742710_113745095_113745237_113747451_113747600_113748521_113748659_113750639_113750817_113757817_113757921_113758730_113758899_113759675_113759793_113760551_113760747_113763656_113763741_113763856_113764048_113765400_113765513_113776075
69516	chr9	-	602	5	FSM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	61	33	61	-33	multi-exon	TRUE	canonical	2	6	junction_2	1.92028643696715	38	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCGAAACATGAAAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	37524957	37514618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131_37523315_37524851
69517	chr11	-	1003	4	NIC	ENSMUSG00000020736.13	novel	858	5	NA	NA	9	-5	intron_retention	FALSE	canonical	3	183	junction_3	12.7104506432917	909	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGAGGCTTTGGATCTTTG	NA	False	NA	NA	False	NA	NA	NA	115382668	115381250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115381571_115381678_115382025_115382096_115382198_115382432
69518	chr2	+	3529	1	Antisense	novelGene_ENSMUSG00000027547.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	85	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAACCTGCATTCTCC	NA	False	NA	NA	False	NA	NA	NA	168603209	168606738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_168603200_168606700
69519	chr19	-	1279	4	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1197	4	NA	NA	-14	-9	multi-exon	FALSE	canonical	2	4	junction_1	26.9608770051883	1	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGTGTAAGTAATGTT	7800	False	NA	NA	False	NA	NA	NA	4861627	4840104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4840339_4842425_4842849_4843843_4844038_4861199
69520	chr1	+	431	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-3	-135	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_3	9439.08929664298	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAAACGTGGTCACCTT	NA	False	NA	NA	False	NA	NA	NA	86454525	86457796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457239_86457485_86457527_86457686
69521	chr11	-	2172	14	FSM	ENSMUSG00000020904.12	ENSMUST00000021287.12	2199	14	26	1	26	-1	multi-exon	TRUE	canonical	0	0	junction_9	5.45557637738374	26	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGATCTCTTTTCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	67856442	67815634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_67816095_67817204_67817317_67818134_67818238_67821554_67821707_67822549_67822696_67826649_67826799_67829742_67829914_67830604_67830706_67836178_67836296_67837123_67837224_67840393_67840523_67844306_67844444_67844797_67844998_67856347
69522	chr1	-	564	2	Intergenic	novelGene_370	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACACAGATGGGAATTGCT	2753	False	NA	NA	False	NA	NA	NA	55007582	55006078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_55006282_55007221
69524	chr3	-	1677	7	NNC	ENSMUSG00000028133.18	novel	1484	5	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	45.9942629272632	13	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGTGTCTGAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	120965293	120949046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_120949707_120949835_120949952_120950049_120950166_120950561_120950615_120952336_120952905_120953395_120953507_120965240
69529	chr9	-	961	5	FSM	ENSMUSG00000079681.4	ENSMUST00000115494.3	1010	5	42	7	42	-5	multi-exon	FALSE	canonical	3	10	junction_1	4.5	40	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGATTATTTTTAATT	963	False	NA	NA	False	NA	NA	NA	20978347	20973695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20974014_20974189_20974284_20974609_20974693_20977319_20977674_20978235
69530	chr7	-	621	7	NIC	ENSMUSG00000074129.15	novel	734	8	NA	NA	8	12	combination_of_known_splicesites	FALSE	canonical	3	8	junction_4	7537.22709106089	2	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGTTCACAGAGGTCCT	NA	False	NA	NA	False	NA	NA	NA	44778136	44775414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776632_44776699_44776919_44776993_44777965
69531	chr18	-	970	7	NIC	ENSMUSG00000063889.17	novel	2662	10	NA	NA	15	-3	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	30.7159929388946	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAATTATGGCTTTTTCC	10	True	NA	NA	False	NA	NA	NA	3337473	3267516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3267733_3273421_3273579_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
69534	chr10	-	512	3	NNC	ENSMUSG00000033307.8	novel	544	3	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8528	4	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	NA	False	NA	NA	NA	75696102	75695186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75695378_75695580_75695694_75695894
69535	chr17	-	522	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2381.91758043808	13	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACATGTCCACTTGT	NA	False	NA	NA	False	NA	NA	NA	27854218	27849404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853185_27853317_27853450_27854177
69536	chr7	+	747	6	NNC	ENSMUSG00000030435.17	novel	2088	12	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	741.229087394714	140	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	22	False	NA	NA	False	NA	NA	NA	5065230	5082932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071098_5082642
69537	chr14	-	776	3	FSM	ENSMUSG00000021917.17	ENSMUST00000227838.2	378	3	-10	-388	3	-1	multi-exon	FALSE	canonical	3	1787	junction_2	3.5	1690	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTACATTTGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	30723317	30721785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30722180_30722634_30722861_30723161
69540	chr11	+	1308	1	FSM	ENSMUSG00000092870.3	ENSMUST00000175129.3	91	1	-546	-671	-546	671	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAACAGGAATGGTGGGA	NA	False	NA	NA	False	NA	NA	NA	52017026	52018334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52017000_52018300
69542	chr12	+	1520	2	NNC	ENSMUSG00000051721.7	novel	2892	2	NA	NA	-20	-1146	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCATTTGTTTGTTTATA	NA	False	NA	NA	False	NA	NA	NA	4900125	4908897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_4901239_4908490
69543	chr11	-	1666	1	Intergenic	novelGene_2519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAAACCAGGTTCTACTT	NA	False	NA	NA	False	NA	NA	NA	109122353	109120687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_109120700_109122400
69545	chr8	+	1100	5	ISM	ENSMUSG00000044433.17	ENSMUST00000208064.2	3241	10	4436	-20	181	-12	3prime_fragment	FALSE	canonical	3	138	junction_1	15.4171171105366	52	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAGCCTGACCAAGTTT	711	False	NA	NA	False	NA	NA	NA	3656518	3659063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_3656821_3657790_3657891_3658188_3658302_3658393_3658513_3658597
69546	chr5	+	760	5	NNC	ENSMUSG00000028932.9	novel	1785	13	NA	NA	5842	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	755.518820083259	1	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGTGCTTCCAGATCT	NA	False	NA	NA	False	NA	NA	NA	22004942	22008782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_22004951_22006209_22006371_22007523_22007612_22008067_22008291_22008502
69547	chr10	+	716	6	NIC	ENSMUSG00000020056.17	novel	1052	7	NA	NA	27	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	154.017401614233	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATATGGTTTGTTGACCA	NA	False	NA	NA	False	NA	NA	NA	88037072	88081867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88081617
69548	chr6	+	815	6	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	0	521	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	65.5267884151207	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTTACTATATTACCAAAT	778	False	NA	NA	False	NA	NA	NA	52079928	52090029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_52080017_52082951_52083012_52083750_52083877_52089331_52089572_52089618_52089780_52089889
69551	chr11	-	775	4	ISM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	50	1322	-3	68	5prime_fragment	FALSE	canonical	3	5636	junction_2	515.209342565395	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTTGGAGAAGAGTTACG	NA	False	NA	NA	False	NA	NA	NA	120239318	120237837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120238176_120238461_120238702_120238794_120238924_120239250
69552	chr1	-	968	6	FSM	ENSMUSG00000062963.11	ENSMUST00000111302.4	914	6	89	-143	42	-4	multi-exon	FALSE	canonical	3	530	junction_3	38.9943585663362	29	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTAGCCTGTGGTTCTCA	7409	False	NA	NA	False	NA	NA	NA	171122471	171116141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206
69553	chr2	+	1153	1	FSM	ENSMUSG00000049086.9	ENSMUST00000061483.9	983	1	103	-273	103	273	mono-exon	FALSE	NA	NA	NA	NA	NA	1046	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAATAAAATAAAGGTAC	NA	False	NA	NA	False	NA	NA	NA	25596853	25598006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25596900_25598000
69555	chr8	+	1499	5	FSM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	117	0	-5	0	multi-exon	FALSE	canonical	3	32	junction_1	6.68954408012983	114	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	False	NA	NA	False	NA	NA	NA	105067342	105074304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
69556	chr14	+	1188	1	Intergenic	novelGene_624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCAGGCTGGCCTCGAAC	1394	False	NA	NA	False	NA	NA	NA	79705701	79706889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_79705700_79706900
69558	chr17	-	846	2	NIC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-468	0	combination_of_known_splicesites	FALSE	canonical	3	432	junction_1	0	1369	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	NA	False	NA	NA	NA	30846347	30841414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_30841669_30845755
69559	chr2	-	1418	2	Genic_Genomic	ENSMUSG00000077192.5	novel	132	1	NA	NA	-923	949	multi-exon	FALSE	canonical	3	46	junction_1	0	36	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGAAGCATGGTGGAGCA	NA	False	NA	NA	False	NA	NA	NA	26530256	26528252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_26529484_26530069
69560	chr14	-	1596	4	ISM	ENSMUSG00000021965.4	ENSMUST00000225646.2	1242	7	20	9387	-2	2536	5prime_fragment	FALSE	canonical	3	216	junction_1	9.42809041582063	29	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAACAAAAAAACCTGA	NA	False	NA	NA	False	NA	NA	NA	58063622	58056807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_58058020_58059492_58059659_58060357_58060420_58063466
69562	chr7	+	971	9	NNC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-236	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	26.4952825989835	367	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGATTTTTGATTCAGTG	2976	False	NA	NA	False	NA	NA	NA	6263298	6284854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269869_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
69564	chr11	+	1655	1	Intergenic	novelGene_2406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGTAATCGTCAAACTAAC	NA	False	NA	NA	False	NA	NA	NA	76105731	76107386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_76105700_76107400
69566	chr11	-	2617	1	NIC	ENSMUSG00000018287.13	novel	1159	7	NA	NA	2	-2273	mono-exon	FALSE	NA	NA	NA	NA	NA	3	91	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTTCCAGATTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	70560114	70557497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70557500_70560100
69567	chrX	+	651	5	ISM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	45	24111	-17	9961	5prime_fragment	FALSE	canonical	2	666	junction_2	133.121185391357	74	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCATCGTCATATTGTT	NA	False	NA	NA	False	NA	NA	NA	154045483	154056539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387
69568	chr17	+	795	4	NNC	ENSMUSG00000023861.18	novel	958	5	NA	NA	-11	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	498.043059271875	4	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTAATGGCAATAAATGG	2200	False	NA	NA	False	NA	NA	NA	8502672	8516459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_8502794_8515366_8515457_8515694_8515789_8515969
69570	chr13	-	1427	2	NNC	ENSMUSG00000113238.2	novel	794	2	NA	NA	-874	-243	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	10	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATAATAGTGCCACTCCCT	NA	False	NA	NA	False	NA	NA	NA	65402391	65400760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65400959_65401162
69571	chr9	+	1475	4	FSM	ENSMUSG00000032251.13	ENSMUST00000113245.9	2158	4	680	3	414	-3	multi-exon	TRUE	canonical	3	114	junction_3	13.589211407093	56	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTACAGCGATGTTGATCT	NA	False	NA	NA	False	NA	NA	NA	82712272	82729737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_82712393_82719470_82719537_82728351_82728483_82728579
69572	chr1	+	523	1	NIC	ENSMUSG00000087589.4	novel	910	3	NA	NA	5509	-1223	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTTGGTCCGGTGCAT	NA	False	NA	NA	False	NA	NA	NA	36602948	36603471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_36602900_36603500
69573	chrX	+	224	1	ISM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	45319	724	2672	-724	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150844742	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150844700_150845000
69574	chr5	+	384	1	Intergenic	novelGene_873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACTAACACAACCTCATG	NA	False	NA	NA	False	NA	NA	NA	142886748	142887132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_142886700_142887100
69575	chr7	-	614	5	FSM	ENSMUSG00000101970.9	ENSMUST00000184587.5	5140	5	291	4235	43	0	multi-exon	FALSE	canonical	3	140	junction_4	46.3384289763906	138	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCAGTTTGGGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	73207852	73193783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207786
69576	chr3	-	794	1	Antisense	novelGene_ENSMUSG00000027896.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGCTCTGTTGTAGT	8106	False	NA	NA	False	NA	NA	NA	107213624	107212830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_107212800_107213600
69577	chr5	+	646	2	Intergenic	novelGene_734	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	3	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATGTTAGAAAATGTTTT	729	False	NA	NA	False	NA	NA	NA	86110975	86111755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_86111029_86111162
69578	chr12	+	799	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	-16	397	-16	-4	multi-exon	FALSE	canonical	3	1039	junction_3	63.8609600790829	5879	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCTTCTGTTAAACTTC	NA	False	NA	NA	False	NA	NA	NA	4867527	4877262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
69579	chr2	-	842	7	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	721.928609120505	9	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTCTGTGGTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	90734997	90724976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734960
69580	chr7	+	907	6	FSM	ENSMUSG00000038695.14	ENSMUST00000118493.8	922	6	46	-31	-5	0	multi-exon	FALSE	canonical	3	11	junction_1	23.6016948543955	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGCCTGGGCTCAGCTC	4880	False	NA	NA	False	NA	NA	NA	44117541	44121076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44117615_44117729_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
69582	chr3	-	997	1	Intergenic	novelGene_3164	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCAGGTCAGTAGAGGGT	NA	False	NA	NA	False	NA	NA	NA	97567774	97566777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_97566800_97567800
69583	chr7	-	1376	5	FSM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	19	1963	-4	-45	multi-exon	FALSE	canonical	2	5	junction_4	1.87082869338697	50	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTATTATTTAAAAGTATT	2294	False	NA	NA	False	NA	NA	NA	78780747	78766812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78767242_78767596_78767900_78771394_78771764_78773117_78773300_78780654
69584	chr3	+	2066	2	Intergenic	novelGene_3104	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	100	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCCCCCCAAATAGCGA	8276	False	NA	NA	False	NA	NA	NA	37722984	37733131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_37723216_37731296
69585	chr2	-	2117	10	NNC	ENSMUSG00000027030.16	novel	2578	11	NA	NA	390	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	17.6495374681465	2	37	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGCACTCGAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	68196473	68040797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_68042338_68051247_68051313_68097378_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417
69587	chr7	+	653	6	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1078.23752485248	463	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8571	False	NA	NA	False	NA	NA	NA	27869174	27878694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27869244_27873928_27874016_27876601_27876701_27877629_27877743_27878322_27878469_27878555
69589	chr11	+	1339	8	FSM	ENSMUSG00000034706.17	ENSMUST00000144872.2	2247	8	50	858	50	-858	multi-exon	FALSE	canonical	0	0	junction_1	2.87139303460597	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTAAAAAAGTGAGACTTT	NA	False	NA	NA	False	NA	NA	NA	114627916	114644037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_114628021_114629441_114629585_114631242_114631357_114635126_114635267_114635880_114636004_114641163_114641388_114642611_114642748_114643682
69593	chr8	-	1479	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	6	39	6	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTCAGCTAGGAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	85389477	85387998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85388000_85389500
69594	chr5	+	1132	4	FSM	ENSMUSG00000029641.9	ENSMUST00000031646.8	1126	4	-14	8	-14	-8	multi-exon	FALSE	canonical	2	3	junction_1	0.816496580927726	36	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATACTATTCCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146781866	146784528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146782151_146782469_146782527_146782649_146782730_146783817
69595	chr9	-	1040	3	NIC	ENSMUSG00000001348.16	novel	1447	6	NA	NA	-9	-946	intron_retention	FALSE	canonical	3	129	junction_2	65.5	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCAGGTGAGGACTCT	8887	False	NA	NA	False	NA	NA	NA	22043136	22038979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_22039317_22040826_22041426_22043032
69596	chr8	-	1564	9	NNC	ENSMUSG00000013160.8	novel	1629	8	NA	NA	-14	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	263.3431399809	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTCTGTCTGCTCCCTC	NA	False	NA	NA	False	NA	NA	NA	106292693	106251093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106251697_106251788_106251867_106251954_106251996_106252061_106252132_106252271_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
69602	chr2	+	776	3	Intergenic	novelGene_2650	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3.5	1	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACACATCAATGACCAGGC	NA	False	NA	NA	False	NA	NA	NA	72497966	72502519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_72498031_72500835_72501123_72502094
69603	chr5	-	692	4	ISM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	20	1	0	-1	intron_retention	FALSE	canonical	3	348	junction_3	11.0453610171873	123	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACATTAGAATGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	100577374	100568701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955
69607	chr9	-	948	5	FSM	ENSMUSG00000058444.9	ENSMUST00000216999.2	1150	5	197	5	197	-5	multi-exon	FALSE	canonical	2	2	junction_1	28.3372546306095	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATATATTCATTTTAT	NA	False	NA	NA	False	NA	NA	NA	63284962	63247512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_63247716_63250668_63250739_63265274_63265343_63279018_63279068_63284404
69608	chr11	+	799	3	FSM	ENSMUSG00000020544.15	ENSMUST00000099960.3	773	3	243	-269	243	-1	multi-exon	FALSE	canonical	3	285	junction_2	50.5	60	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATAGGCCTGACAACTTG	NA	False	NA	NA	False	NA	NA	NA	90531246	90535756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_90531359_90534478_90534605_90535195
69612	chr16	+	866	6	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	0	3	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	56.7189562668426	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGGAAAGATGGGTTG	NA	False	NA	NA	False	NA	NA	NA	21613091	21627779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_21613197_21614599_21614726_21619524_21619587_21620030_21620107_21621702_21621848_21627427
69613	chr1	-	2148	2	ISM	ENSMUSG00000026235.15	ENSMUST00000190149.7	3043	16	35	131537	35	-103945	5prime_fragment	FALSE	canonical	1	1	junction_1	0	2	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAAGCTAAAGTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	77491681	77481804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_77483849_77491577
69616	chr1	-	2141	1	ISM	ENSMUSG00000037568.13	ENSMUST00000166139.7	3897	8	29391	119	29097	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	3	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAACTGAAGGACTTCAC	NA	False	NA	NA	False	NA	NA	NA	190682102	190679961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_190680000_190682100
69617	ERCC-00002	+	1045	1	FSM	ERCC-00002A	DQ459430	1045	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3118	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00002_+_0_1000
69618	SIRV6	+	392	4	FSM	SIRV6A	SIRV609	485	4	-50	143	0	27	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	1017	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATCTGTATCGTGCCGCT	NA	False	NA	NA	False	NA	NA	NA	1087	1977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
69619	chr2	+	845	6	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	1	2661	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.8830483816451	136	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCCTGTGTTTGCAAA	NA	False	NA	NA	False	NA	NA	NA	162232733	162238526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162232759_162232933_162233118_162233218_162233320_162236359_162236484_162238066_162238329_162238377
69621	chr1	-	1416	8	FSM	ENSMUSG00000026675.13	ENSMUST00000111353.4	1446	8	26	4	26	-4	multi-exon	FALSE	canonical	3	56	junction_5	6.15115718331742	57	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAAATACTTCTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	169796784	169783073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
69622	chr7	+	839	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	50	1118	-25	-102	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGGCCCGACAGCAGCAC	NA	False	NA	NA	False	NA	NA	NA	78545731	78557011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
69627	chr9	-	772	7	NIC	ENSMUSG00000032299.11	novel	858	8	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	32	junction_5	406.295322258193	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAATGTGTATGGGTCTTG	6292	False	NA	NA	False	NA	NA	NA	57065600	57062327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064350_57064423_57065555
69630	chrX	-	2174	5	NNC	ENSMUSG00000056537.12	novel	7429	5	NA	NA	17	-5227	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.1308252200114	1	126	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAGCTGAATTGAGTCA	2390	False	NA	NA	False	NA	NA	NA	103024873	103005995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_103007672_103008889_103008941_103010096_103010287_103022878_103022941_103024678
69631	chr1	-	959	2	Antisense	novelGene_ENSMUSG00000079139.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCGCCGCGAGCAGATGG	6719	False	NA	NA	False	NA	NA	NA	135160898	135159762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_135160080_135160256
69633	chr4	+	395	2	ISM	ENSMUSG00000034035.19	ENSMUST00000051869.8	2003	13	2857	66	1095	-1	3prime_fragment	FALSE	canonical	3	4	junction_1	0	2	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTAAATGTCTTCAAATAT	8102	False	NA	NA	False	NA	NA	NA	116456783	116457397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_116456865_116457083
69636	chr13	-	738	4	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	-5	at_least_one_novel_splicesite	FALSE	canonical	3	219	junction_3	475.847547948804	11	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGAAACTCCAGGTGGT	NA	False	NA	NA	False	NA	NA	NA	100881584	100872641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100872782_100875521_100875710_100877675_100877740_100881238
69637	chr15	+	511	5	FSM	ENSMUSG00000033020.8	ENSMUST00000040077.8	452	5	-13	-46	-13	0	multi-exon	FALSE	canonical	3	17	junction_3	888.21224940889	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGTTACCTGCGTGCTG	NA	False	NA	NA	False	NA	NA	NA	79025537	79035974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79025635_79028793_79028864_79030252_79030339_79035535_79035608_79035788
69639	chrX	-	1169	2	Intergenic	novelGene_3880	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	34	junction_1	0	87	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGGTGGTTGCGTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	9198906	9195214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_9196165_9198687
69640	chr17	-	473	1	Intergenic	novelGene_281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGACACACCAGGAGAGGG	NA	False	NA	NA	False	NA	NA	NA	66717761	66717288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66717300_66717800
69641	chr17	-	897	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	2449	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	11.6484977572217	80	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACATCCCACAGCCAAT	NA	False	NA	NA	False	NA	NA	NA	69584203	69579907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_69580339_69582162_69582295_69582786_69582902_69583120_69583191_69584054
69642	chr4	-	1185	4	ISM	ENSMUSG00000028669.16	ENSMUST00000147458.8	465	5	306	-794	-78	-142	3prime_fragment	FALSE	canonical	3	537	junction_2	16.3299316185545	93	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTCTTTTCTTCTGTG	3363	False	NA	NA	False	NA	NA	NA	135713327	135702912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135703808_135704459_135704569_135706107_135706213_135713251
69643	chr5	+	1236	16	ISM	ENSMUSG00000029134.15	ENSMUST00000201313.2	1560	18	14611	2203	8	-2203	internal_fragment	FALSE	canonical	0	0	junction_1	1.28927197372091	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGGAAGAACAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	32404702	32448628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_32404905_32419705_32419768_32421017_32421091_32422244_32422304_32427146_32427194_32427694_32427739_32430390_32430482_32430786_32430839_32433411_32433499_32438442_32438506_32439078_32439159_32442228_32442302_32443146_32443246_32444147_32444205_32447182_32447255_32448553
69644	chr7	-	1391	5	NNC	ENSMUSG00000030402.6	novel	1648	5	NA	NA	-209	0	at_least_one_novel_splicesite	TRUE	canonical	3	13	junction_1	5.35607132140714	56	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTCTTCGTTGTTGT	9809	False	NA	NA	False	NA	NA	NA	19013735	19010729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19011132_19011874_19011936_19012009_19012116_19012194_19012313_19013031
69645	chr12	+	3105	1	ISM	ENSMUSG00000047414.7	ENSMUST00000057324.4	7099	2	89885	0	86754	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTGTTTATCTGAGT	825	False	NA	NA	False	NA	NA	NA	95748884	95751989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_95748900_95752000
69646	chr3	+	972	8	FSM	ENSMUSG00000027935.15	ENSMUST00000107373.8	1415	8	25	418	10	-2	multi-exon	FALSE	canonical	2	6	junction_1	8.56666534317997	51	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGTCCCATTTGCATTA	NA	False	NA	NA	False	NA	NA	NA	90121026	90133274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90121130_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
69647	chr7	-	418	2	NNC	ENSMUSG00000038539.16	novel	1816	3	NA	NA	-13	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCCTCTGCCTTCACCC	9757	False	NA	NA	False	NA	NA	NA	44466011	44462557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44462859_44465894
69649	chr7	-	1247	2	Antisense	novelGene_ENSMUSG00000030811.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTACACCTGCTCCCAA	8150	False	NA	NA	False	NA	NA	NA	127367891	127366557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_127366833_127366919
69650	chr12	+	823	4	FSM	ENSMUSG00000021241.8	ENSMUST00000222982.2	727	4	-12	-84	2	0	multi-exon	FALSE	canonical	0	0	junction_3	90.0900783783776	55	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	84820066	84821862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84820146_84820369_84820452_84820566_84820683_84821316
69651	chr4	-	1668	8	FSM	ENSMUSG00000008575.18	ENSMUST00000122918.8	2699	8	84	947	82	822	multi-exon	FALSE	canonical	3	16	junction_3	4.89064079103534	9	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGTACCTTCTTATGACC	NA	False	NA	NA	False	NA	NA	NA	82423463	82246008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
69653	chr16	+	748	4	FSM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	11	8	-5	6	multi-exon	FALSE	canonical	3	20	junction_2	60.8896999134957	207	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAAAGATGGGTTGAAA	NA	False	NA	NA	False	NA	NA	NA	21613078	21627782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_21613197_21614599_21614726_21625720_21625870_21627427
69654	chr11	-	1484	2	FSM	ENSMUSG00000048807.3	ENSMUST00000051207.2	3059	2	1493	82	1493	-82	multi-exon	FALSE	canonical	3	11	junction_1	0	6	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTAGCTACTGCGGCTTC	731	False	NA	NA	False	NA	NA	NA	3863171	3857103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3857985_3862568
69655	chr14	-	1359	4	NNC	ENSMUSG00000002319.17	novel	3474	29	NA	NA	108	0	intron_retention	FALSE	non_canonical	0	0	junction_2	199.870513638761	4	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTATAAGGAAGCAGCTG	NA	False	NA	NA	False	NA	NA	NA	55868009	55863180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863889_55867136_55867325_55867434
69656	chr16	+	2237	3	Intergenic	novelGene_3633	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	3	8	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTGTTGTGGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	29921297	29927341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_29921497_29923369_29923503_29925436
69657	chr19	+	1579	3	ISM	ENSMUSG00000025194.6	ENSMUST00000026208.6	8027	32	51747	2022	-4864	-2010	3prime_fragment	FALSE	canonical	1	1	junction_1	0	1	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAATGTTTTATATCTC	NA	False	NA	NA	False	NA	NA	NA	43822377	43827157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_43822471_43825022_43825218_43825866
69658	chr7	-	850	4	ISM	ENSMUSG00000030619.11	ENSMUST00000238792.2	1503	12	18163	-206	288	-71	3prime_fragment	FALSE	canonical	3	1777	junction_2	279.662097698077	3	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTATTTTTATTGTG	NA	False	NA	NA	False	NA	NA	NA	89611747	89603938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_89604272_89604738_89604813_89605462_89605622_89611463
69659	chr6	+	1258	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	-20	4	-20	-4	multi-exon	FALSE	canonical	3	115	junction_1	5	42	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCACTCCCTTCTGTCCCTG	NA	False	NA	NA	False	NA	NA	NA	83688225	83715291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83688526_83710080_83710269_83714521
69660	chr19	+	620	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	41	145	-5	-5	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCACCGTGTGGGATGAAG	NA	False	NA	NA	False	NA	NA	NA	8866257	8868100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
69661	chr13	+	1571	1	FSM	ENSMUSG00000113212.2	ENSMUST00000221116.2	367	1	-66	-1138	-66	1138	mono-exon	FALSE	NA	NA	NA	NA	NA	37	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAATATGGGTGATCCT	NA	False	NA	NA	False	NA	NA	NA	74588218	74589789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74588200_74589800
69662	chr14	-	1022	7	Antisense	novelGene_ENSMUSG00000021737.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCCGGCTGACAGAACCA	9803	False	NA	NA	False	NA	NA	NA	8357486	8348867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_8349033_8352769_8352937_8353157_8353378_8353502_8353613_8355468_8355644_8357164_8357229_8357365
69663	chr7	+	1074	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	-11	13	-4	-10	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	699	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCACTGATGGCATCT	NA	False	NA	NA	False	NA	NA	NA	139616313	139620502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
69664	chr12	+	2355	3	FSM	ENSMUSG00000045064.6	ENSMUST00000059341.5	4482	3	132	1995	132	417	multi-exon	FALSE	canonical	1	1	junction_2	2	12	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAATATGACTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	85335496	85344137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_85335560_85336325_85337656_85343175
69667	chr10	-	750	1	NIC	ENSMUSG00000090247.8	novel	613	4	NA	NA	2360	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTGGTGTGTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	128756535	128755785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128755800_128756500
69668	chr8	-	918	2	Intergenic	novelGene_1733	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	2	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCAGCCACACAACCAACA	NA	False	NA	NA	False	NA	NA	NA	110740158	110736948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_110737835_110740126
69669	chr8	-	345	1	Intergenic	novelGene_1732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTTAAAAAAACTGCTG	NA	False	NA	NA	False	NA	NA	NA	110736250	110735905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_110735900_110736200
69670	chr3	-	910	3	FSM	ENSMUSG00000049940.8	ENSMUST00000058578.8	3007	3	399	1698	399	496	multi-exon	FALSE	canonical	3	569	junction_2	17	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAGAGGAATATCCAGCG	NA	False	NA	NA	False	NA	NA	NA	41037082	41022458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_41023160_41024714_41024871_41037029
69671	chr6	-	1063	2	ISM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	5763	2180	5666	-2180	3prime_fragment	FALSE	canonical	3	1002	junction_1	0	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCTTCCAGAGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	91444765	91441333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_91442296_91444664
69672	chr19	-	665	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	-24	1	-24	-1	multi-exon	FALSE	canonical	3	194	junction_5	200.859752065963	2853	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGTGAGTCTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	6957832	6955109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
69673	chr15	-	366	2	Antisense	novelGene_ENSMUSG00000059883.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTCCAGAGTGTAGTGCT	NA	False	NA	NA	False	NA	NA	NA	94464655	94464067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_94464395_94464616
69674	chr4	-	1992	1	ISM	ENSMUSG00000063077.16	ENSMUST00000030806.6	6991	21	71810	88	12166	-88	mono-exon	FALSE	NA	NA	NA	NA	NA	12	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGAAGATTGTCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	149320270	149318278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_149318300_149320300
69675	chr2	+	1739	1	ISM	ENSMUSG00000027652.16	ENSMUST00000109486.9	8383	30	87486	181	19605	-181	mono-exon	FALSE	NA	NA	NA	NA	NA	36	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGATGTAAATATGAAGGT	NA	False	NA	NA	False	NA	NA	NA	158339253	158340992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_158339300_158341000
69676	chr1	-	1180	8	NNC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	1	-3022	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	123.283313997491	1	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACATATGCACATCCTGAA	NA	False	NA	NA	False	NA	NA	NA	194813868	194789125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_194789231_194793387_194793464_194796963_194797150_194799786_194800189_194805999_194806084_194811454_194811555_194812137_194812306_194813809
69679	chr4	+	1018	1	Intergenic	novelGene_1956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGTGTTAAAAAACTCGA	NA	False	NA	NA	False	NA	NA	NA	127018354	127019372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_127018400_127019400
69680	chr9	-	2204	1	ISM	ENSMUSG00000037287.16	ENSMUST00000125995.8	4849	8	43076	4	13715	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	37	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTCCTTGTGTTCTGAG	5168	False	NA	NA	False	NA	NA	NA	42325819	42323615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_42323600_42325800
69681	chr6	-	846	5	NNC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-32	1	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_4	274.15232991897	401	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAACCCGTCTCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	124892524	124890649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892434
69682	chr19	-	2293	1	Intergenic	novelGene_1205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGATTAAAGTTCAACTCT	NA	False	NA	NA	False	NA	NA	NA	10073017	10070724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_10070700_10073000
69683	chr6	+	1899	1	NIC	ENSMUSG00000034023.17	novel	5512	44	NA	NA	5251	134	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	16	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACTCTCAGGTTTAACT	NA	False	NA	NA	False	NA	NA	NA	113513915	113515814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113513900_113515800
69686	chr1	+	1495	1	FSM	ENSMUSG00000103746.2	ENSMUST00000191779.2	889	1	9	-615	9	615	mono-exon	FALSE	NA	NA	NA	NA	NA	7	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAAATTGTGCAGCTA	NA	False	NA	NA	False	NA	NA	NA	33708913	33710408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_33708900_33710400
69687	chr7	+	2068	14	NIC	ENSMUSG00000013921.16	novel	3300	14	NA	NA	5	-175	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	3.75113395084203	2	40	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATTTTCCACTTCACC	7176	False	NA	NA	False	NA	NA	NA	29991158	30006554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29991268_29991579_29991792_29996272_29996413_29996497_29996592_29996779_29996942_29997344_29997464_29998236_29998474_30001270_30001407_30001560_30001690_30002794_30002939_30003032_30003157_30003336_30003402_30005183_30005257_30006230
69688	chr11	+	1099	4	FSM	ENSMUSG00000020895.15	ENSMUST00000094081.5	1263	4	-31	195	-26	68	multi-exon	FALSE	canonical	3	354	junction_2	22.0655588845805	1111	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGTGGTTAGGGCTAGA	4621	False	NA	NA	False	NA	NA	NA	68961605	68963924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248
69690	chr3	-	2082	2	Genic_Genomic	ENSMUSG00000028141.13	novel	881	6	NA	NA	-1699	-8253	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACAGAGGCCGCCATGA	NA	False	NA	NA	False	NA	NA	NA	94352921	94350675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_94350799_94350962
69691	chr7	-	908	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	-11	4	-11	-4	multi-exon	FALSE	canonical	3	245	junction_5	66.0714764478591	1604	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTTCCTGTTTTCTGCTT	8488	False	NA	NA	False	NA	NA	NA	24997422	24994477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
69692	chr5	-	1266	5	ISM	ENSMUSG00000029319.9	ENSMUST00000031262.9	1743	7	10597	0	732	0	3prime_fragment	FALSE	canonical	3	317	junction_3	17.5979402203781	115	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCGACTCTTCATTACAG	9399	False	NA	NA	False	NA	NA	NA	100811553	100802588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100803338_100805683_100805873_100808037_100808172_100809702_100809789_100811445
69693	chr17	-	1462	7	NIC	ENSMUSG00000061046.10	novel	1405	9	NA	NA	-2	-5	intron_retention	FALSE	canonical	3	42	junction_6	7.16472842006823	223	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCAGAGGTGCAGGTCTG	4357	False	NA	NA	False	NA	NA	NA	26004543	26001768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003547_26003634_26003700_26003977_26004169_26004401
69694	chr1	+	1254	9	Antisense	novelGene_ENSMUSG00000040225.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	52	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGAGGGTGAGAGCGA	NA	False	NA	NA	False	NA	NA	NA	162542971	162568054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162543052_162543157_162543288_162543847_162543927_162546256_162546476_162548044_162548175_162548997_162549109_162550678_162550857_162552272_162552439_162567893
69695	chr12	-	552	2	ISM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	69	5	-63	-5	intron_retention	FALSE	canonical	3	25878	junction_1	0	53	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAATTCCTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	69205891	69204500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_69204596_69205434
69697	chr1	+	2234	12	ISM	ENSMUSG00000038242.13	ENSMUST00000040442.6	4973	35	43512	-1	13303	1	3prime_fragment	FALSE	canonical	0	0	junction_4	1.16420440680597	11	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAAGCCTCTGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	58293067	58307757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_58293155_58293298_58293491_58294633_58294862_58296373_58296470_58298200_58298330_58301723_58301799_58302501_58302555_58302992_58303108_58303500_58303567_58304117_58304304_58305786_58305955_58306918
69698	chrX	+	1848	12	NIC	ENSMUSG00000087368.8	novel	3201	10	NA	NA	5	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	8.02269508105826	69	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAGTGTCATTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	135642599	135704110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_135642700_135644151_135644210_135645241_135645458_135648071_135648198_135657242_135657370_135658849_135658946_135659308_135659508_135660604_135660668_135661166_135661325_135662739_135662838_135689269_135689367_135703600
69700	chr10	-	916	6	ISM	ENSMUSG00000039824.5	ENSMUST00000026428.4	1026	7	1266	54	1266	-54	3prime_fragment	FALSE	canonical	0	0	junction_1	1.72046505340853	19	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCCTGCCACTAGGGGG	4680	False	NA	NA	False	NA	NA	NA	128333288	128330079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128330353_128330458_128330537_128330922_128331097_128332121_128332266_128332482_128332511_128333069
69704	chr12	+	1353	3	FSM	ENSMUSG00000072949.7	ENSMUST00000168120.3	2272	3	217	702	217	-5	multi-exon	FALSE	canonical	3	130	junction_1	2	56	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGTTGTGTAACCGAAA	3036	False	NA	NA	False	NA	NA	NA	84056480	84064443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_84056741_84061152_84061356_84063553
69706	chr13	+	451	2	Genic_Genomic	ENSMUSG00000059751.8	novel	795	1	NA	NA	141	39	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTGATCAAAAAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	108807277	108807970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_108807601_108807842
69707	chr12	-	725	5	FSM	ENSMUSG00000020949.10	ENSMUST00000220983.2	654	5	-39	-32	-10	-13	multi-exon	FALSE	canonical	3	24	junction_2	4405.18495638946	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGGATTGTCTTGACTG	NA	False	NA	NA	False	NA	NA	NA	65120713	65109222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_65109515_65110451_65110550_65115775_65115884_65116724_65116827_65120588
69709	chr9	-	1079	2	NNC	ENSMUSG00000036867.8	novel	2971	4	NA	NA	40881	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	53	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	False	NA	NA	False	NA	NA	NA	63883388	63860357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_63861339_63883290
69710	chr18	-	1809	1	Antisense	novelGene_ENSMUSG00000098702.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	74	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGCAGAGCAGCGCACAG	NA	False	NA	NA	False	NA	NA	NA	61861304	61859495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61859500_61861300
69713	chr9	-	824	5	NNC	ENSMUSG00000066839.13	novel	1676	9	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.8419923624295	10	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5908	False	NA	NA	False	NA	NA	NA	21996711	21983541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21983738_21987676_21987942_21989443_21989562_21995318_21995505_21996652
69714	chr1	+	434	1	Antisense	novelGene_ENSMUSG00000025937.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTCCCACCATGATGAT	NA	False	NA	NA	False	NA	NA	NA	13696206	13696640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13696200_13696600
69715	chr5	-	1185	1	ISM	ENSMUSG00000025855.14	ENSMUST00000026973.14	2637	11	111253	16	5304	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACCCTTTCCCAACCTG	NA	False	NA	NA	False	NA	NA	NA	139004261	139003076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_139003100_139004300
69716	chr9	+	2251	3	Antisense	novelGene_ENSMUSG00000040722.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCGGGCCGCGAGCGGCT	NA	False	NA	NA	False	NA	NA	NA	57356649	57375292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_57358770_57359263_57359321_57375218
69717	chr17	+	1193	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_6	52.9339210714642	86	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	NA	NA	NA	95057526	95082560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
69718	chr11	-	1916	9	NNC	ENSMUSG00000039096.11	novel	4143	9	NA	NA	-158	-2071	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_8	12.8494892894621	9	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTTTATCCAAGGCC	3500	False	NA	NA	False	NA	NA	NA	94439776	94432694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296_94439431_94439715
69719	chr16	+	1547	8	Antisense	novelGene_ENSMUSG00002075695.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGACCCTTGGTCCTCACC	NA	False	NA	NA	False	NA	NA	NA	97271936	97313638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_97272424_97276447_97276581_97276934_97277025_97277580_97277631_97279548_97279607_97282985_97283113_97302061_97302203_97313177
69720	chr17	+	1661	8	NIC	ENSMUSG00000036552.20	novel	1342	8	NA	NA	18	-1	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	29.1694556489685	74	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCATGAACTCTATGTTG	NA	False	NA	NA	False	NA	NA	NA	15273121	15284484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15273346_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
69721	chr2	-	1062	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	241	13	-135	-13	multi-exon	FALSE	canonical	3	312	junction_3	26.7332502076846	382	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTCCCCTGGCCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	90748148	90741069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
69722	chr16	+	1250	5	Antisense	novelGene_ENSMUSG00000022978.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	49	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCCCGGAACCTCACGGG	NA	False	NA	NA	False	NA	NA	NA	90516209	90524236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_90516850_90517537_90517635_90518523_90518647_90523180_90523247_90523912
69724	chr1	+	1135	7	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	25	7904	multi-exon	FALSE	canonical	2	2	junction_3	15.192286054296	6	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAAAGTTAATTCAGTC	NA	False	NA	NA	False	NA	NA	NA	63239496	63342085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_63239834_63246673_63246774_63297675_63297792_63317089_63317143_63319925_63320037_63334074_63334206_63341798
69725	chr19	-	1324	2	ISM	ENSMUSG00000024654.9	ENSMUST00000150353.2	320	3	-34	1256	-34	-1256	5prime_fragment	FALSE	canonical	3	447	junction_1	0	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACATCACTGTCAGAAGGG	NA	False	NA	NA	False	NA	NA	NA	9112929	9111078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_9112352_9112878
69727	chr4	-	1089	3	NNC	ENSMUSG00000028597.12	novel	1289	3	NA	NA	934	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	96	25	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTCTAGCCCGTGGAA	NA	False	NA	NA	False	NA	NA	NA	108262987	108257611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108258195_108260397_108260660_108262743
69728	chr1	-	1700	1	Genic_Genomic	ENSMUSG00000102930.2	novel	NA	NA	NA	NA	-670	-1909	mono-exon	FALSE	NA	NA	NA	NA	NA	4	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAACTGAAAATTCAGAA	2228	False	NA	NA	False	NA	NA	NA	36956290	36954590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_36954600_36956300
69729	chr13	+	896	5	FSM	ENSMUSG00000038286.12	ENSMUST00000221124.2	2009	5	-11	1124	-4	258	multi-exon	FALSE	canonical	3	157	junction_3	18.4932420089069	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGGTTTGTGTTGAGG	NA	False	NA	NA	False	NA	NA	NA	34221610	34244745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416
69730	chr8	-	1437	7	NNC	ENSMUSG00000031527.8	novel	5079	7	NA	NA	80	-3497	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	147.844231090248	1	32	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGATTGAAAGGTAGTG	NA	False	NA	NA	False	NA	NA	NA	35962607	35935903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_35936525_35941550_35941666_35943612_35943723_35945713_35945798_35949669_35949881_35958354_35958534_35962490
69731	chr10	+	785	1	FSM	ENSMUSG00000110841.2	ENSMUST00000217344.2	782	1	-15	12	-1	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	45751385	45752170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_45751400_45752200
69732	chr6	+	3254	18	Genic_Genomic	ENSMUSG00000108075.2	novel	2095	1	NA	NA	-38676	49155	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	22	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCTGCAGGCAAGGATA	2328	False	NA	NA	False	NA	NA	NA	58911505	59001431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_58912697_58916280_58916383_58917105_58917302_58921104_58921192_58923024_58923119_58930432_58930521_58931188_58931408_58932200_58932283_58933021_58933160_58933637_58933844_58942044_58942196_58950140_58950183_58951015_58951095_58960876_58961060_58964139_58964318_58966728_58966773_58980451_58980493_59001298
69733	chr17	+	1987	15	NNC	ENSMUSG00000024392.18	novel	1722	12	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	243.952121849969	30	45	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGCCTAGTAGTTT	8832	False	NA	NA	False	NA	NA	NA	35354497	35366281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35354629_35357328_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361473_35361582_35361702_35361816_35361901_35361941_35365827_35365880_35366116
69735	chr5	+	1766	6	NIC	ENSMUSG00000023707.14	novel	1596	7	NA	NA	-4	2	intron_retention	FALSE	canonical	3	73	junction_4	13.9914259459142	206	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCTCTGTTTGCTATTA	NA	False	NA	NA	False	NA	NA	NA	124250379	124253541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252709_124252777
69736	chr17	+	2029	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232663.2	552	5	-40	-1437	5	-51	multi-exon	FALSE	canonical	2	12	junction_4	19.0394327646598	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAATAACTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	21229265	21263255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21261684
69737	chr3	+	968	3	NIC	ENSMUSG00000027533.11	novel	987	4	NA	NA	16	-2	intron_retention	FALSE	canonical	3	202	junction_1	107.5	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATGATATGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	10077680	10081393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_10077779_10080030_10080634_10081126
69738	chr9	-	888	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	304	890	12	9	multi-exon	TRUE	canonical	3	19	junction_2	3.74165738677394	153	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTATTTGTTTACTCTAA	NA	False	NA	NA	False	NA	NA	NA	50679448	50675017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
69739	chrX	-	623	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	19	-6	5	0	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	3694	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	20828220	20818161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
69740	chr8	-	1128	1	Intergenic	novelGene_1783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAGTTATAACTCTCTCA	9905	False	NA	NA	False	NA	NA	NA	124070937	124069809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_124069800_124070900
69741	chr13	-	1228	9	FSM	ENSMUSG00000021416.12	ENSMUST00000021853.12	1347	9	-56	175	-56	-175	multi-exon	TRUE	canonical	2	6	junction_1	1.69096865730859	47	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGCCTTATGAGTTTATG	NA	False	NA	NA	False	NA	NA	NA	35147849	35130771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_35131074_35132054_35132199_35132727_35132818_35136963_35137085_35138064_35138165_35140843_35140914_35143856_35144046_35144383_35144483_35147736
69742	chr13	-	452	1	Intergenic	novelGene_1526	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGGCAGAGAGTTGCCGGA	NA	False	NA	NA	False	NA	NA	NA	104668840	104668388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_104668400_104668800
69744	chr4	-	1201	2	ISM	ENSMUSG00000028950.4	ENSMUST00000030792.2	2863	6	7664	4	7664	-4	3prime_fragment	FALSE	canonical	3	9	junction_1	0	70	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGTGTGTGGCTTCTTG	5436	False	NA	NA	False	NA	NA	NA	152115361	152112374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_152113455_152115240
69746	chr16	+	2418	1	ISM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	117863	3247	98254	2473	mono-exon	FALSE	NA	NA	NA	NA	NA	3	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTAGTTACCCTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	33319068	33321486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_33319100_33321500
69747	chr10	-	1217	5	ISM	ENSMUSG00000035478.15	ENSMUST00000105347.2	914	6	359	-428	-34	-15	3prime_fragment	FALSE	canonical	3	1097	junction_1	94.3328548279972	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGAACTTGTGAACTCTG	NA	False	NA	NA	False	NA	NA	NA	80231194	80228387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897
69748	chr13	+	704	1	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	40	-58021	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGATGTGCCAGATAAC	NA	False	NA	NA	False	NA	NA	NA	99481335	99482039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_99481300_99482000
69749	chr4	+	1150	7	ISM	ENSMUSG00000028519.17	ENSMUST00000106830.9	5278	15	-12	64458	-12	4	5prime_fragment	FALSE	canonical	3	42	junction_1	2.40947204913349	57	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTTGTAACTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	104224774	104537583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266
69750	chr3	+	1327	4	NNC	ENSMUSG00000027999.16	novel	1561	4	NA	NA	465	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	164.056900698101	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATCTCCTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	129672927	129689465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_129673033_129682529_129682607_129683916_129684083_129688486
69751	chr5	+	2384	10	NNC	ENSMUSG00000038342.16	novel	7303	17	NA	NA	-1546	640	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	11.5801021339235	5	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTCCCCAGGCCTTGTC	NA	False	NA	NA	False	NA	NA	NA	123582555	123592249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_123582600_123583530_123584186_123585240_123585368_123585481_123585639_123587352_123587478_123587958_123588058_123588158_123588287_123588489_123588614_123590600_123590731_123591454
69752	chr13	-	700	5	NNC	ENSMUSG00000001707.9	novel	2553	4	NA	NA	12	-1488	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	633.421413831266	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAACTTTTGTTTGTTAT	NA	False	NA	NA	False	NA	NA	NA	38842974	38829670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38829830_38830134_38830287_38838971_38839068_38840015_38840217_38842882
69754	chr2	-	1288	10	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	49.5186708770752	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAGATGATTTGATCCAA	8870	False	NA	NA	False	NA	NA	NA	93841080	93810983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
69755	chr5	-	1261	4	NIC	ENSMUSG00000066640.12	novel	7857	5	NA	NA	27	1	intron_retention	FALSE	canonical	1	2	junction_2	9.7410927974683	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTCTCCAGGATGTTT	NA	False	NA	NA	False	NA	NA	NA	142880966	142857542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_142858276_142864412_142864632_142874423_142874631_142880864
69756	chrX	-	283	1	Genic_Genomic	ENSMUSG00000031402.13	novel	NA	NA	NA	NA	8071	238	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTCCTGGAACTCACTC	NA	False	NA	NA	False	NA	NA	NA	74153383	74153100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_74153100_74153400
69757	chr3	-	781	6	NNC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	93	1	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	152.784292386358	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACTGATCCTGGAGTCC	1569	False	NA	NA	False	NA	NA	NA	95040991	95037038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95037195_95037474_95037670_95040101_95040225_95040327_95040423_95040510_95040600_95040868
69758	chr5	-	1362	13	Antisense	novelGene_ENSMUSG00000105356.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCCGTAGCTCCCGGCTA	NA	False	NA	NA	False	NA	NA	NA	96993709	96941360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96941422_96945258_96945309_96958904_96958996_96960699_96960794_96964197_96964312_96968258_96968349_96972742_96972826_96976206_96976262_96976553_96976650_96978251_96978346_96982631_96982691_96986149_96986275_96993359
69761	chr10	+	1395	5	ISM	ENSMUSG00000019916.15	ENSMUST00000092512.11	2387	14	38495	1266	38491	-1266	internal_fragment	FALSE	canonical	3	170	junction_2	9.40744386111339	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAATCCAAGACAACAGTAT	NA	False	NA	NA	False	NA	NA	NA	59197680	59206512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408
69762	chr15	+	708	5	NNC	ENSMUSG00000001285.13	novel	918	6	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	213.588828125443	20	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTCCCTGATCCACCAA	5953	False	NA	NA	False	NA	NA	NA	102240169	102246290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245320_102246127
69763	chr9	+	957	1	Intergenic	novelGene_1005	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCATGGGTCAGAATCATGA	4536	False	NA	NA	False	NA	NA	NA	31076448	31077405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_31076400_31077400
69764	chr9	+	1689	1	Antisense	novelGene_ENSMUSG00000032560.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGAGAGAGAGAGACACA	549	False	NA	NA	False	NA	NA	NA	104064275	104065964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_104064300_104066000
69765	chr8	+	1208	9	NNC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	-9	-14	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	365.929211050443	2119	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAACTTTATAATACG	NA	False	NA	NA	False	NA	NA	NA	61343513	61360593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61359405_61359473_61360370
69769	chr16	+	1378	8	ISM	ENSMUSG00000052133.17	ENSMUST00000050625.15	4350	22	104212	5642	-12312	132	internal_fragment	FALSE	canonical	3	29	junction_1	3.92272291935599	3	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAGGTAAGGGCAGGATT	NA	False	NA	NA	False	NA	NA	NA	35466152	35478989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_35466181_35466561_35466776_35467413_35467700_35470101_35470238_35471506_35471715_35471849_35472058_35478566_35478685_35478809
69770	chr16	-	1001	1	Antisense	novelGene_ENSMUSG00000022827.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATTAAAACTTCATGGCG	NA	False	NA	NA	False	NA	NA	NA	37385083	37384082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_37384100_37385100
69771	chr7	-	1856	4	Intergenic	novelGene_2973	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGAAAAAAATGCGGGGA	5678	False	NA	NA	False	NA	NA	NA	63919083	63895693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_63895835_63897107_63897312_63897931_63898064_63917704
69772	chr2	-	785	3	FSM	ENSMUSG00000026831.17	ENSMUST00000086370.11	812	3	27	0	11	0	multi-exon	FALSE	canonical	3	128	junction_1	7	310	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	NA	False	NA	NA	NA	28356317	28352012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28352447_28355148_28355228_28356045
69773	chr10	+	729	1	ISM	ENSMUSG00000040021.14	ENSMUST00000165952.9	7209	8	21155	13363	11122	-10489	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTAGAAAATGAAATGATG	NA	False	NA	NA	False	NA	NA	NA	7578132	7578861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_7578100_7578900
69774	chr10	+	1478	4	ISM	ENSMUSG00000040021.14	ENSMUST00000217931.2	4186	7	14441	253	14441	-253	3prime_fragment	FALSE	canonical	3	52	junction_1	1.88561808316413	3	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAATTTTTGAAGATTT	NA	False	NA	NA	False	NA	NA	NA	7581451	7589097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_7581807_7586228_7586412_7586612_7586720_7588264
69775	chr14	-	1054	4	ISM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	-14	1739	0	-1739	5prime_fragment	FALSE	canonical	3	35	junction_2	11.4309521329882	49	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATATGAGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	70879708	70875687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70876014_70876241_70876387_70878971_70879009_70879162
69777	chr13	-	1591	10	NNC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	83.2879876626209	1	106	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCCTTAAGAATTCATGT	NA	False	NA	NA	False	NA	NA	NA	35178113	35161733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_35162050_35162632_35162777_35164239_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174793_35177050_35177214_35177812
69778	chr3	-	2483	4	NNC	ENSMUSG00000040339.11	novel	5368	11	NA	NA	47463	-1373	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.92160768674447	3	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCACCCCAAATTCTACC	2884	False	NA	NA	False	NA	NA	NA	108887126	108879685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108880838_108881527_108882659_108886160_108886231_108886996
69779	chr2	-	1373	1	ISM	ENSMUSG00000026771.15	ENSMUST00000132484.7	6595	11	60655	3857	3774	595	mono-exon	FALSE	NA	NA	NA	NA	NA	12	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAATCAATTACTAG	NA	False	NA	NA	False	NA	NA	NA	23401461	23400088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_23400100_23401500
69780	chr7	-	2152	5	NNC	ENSMUSG00000030834.8	novel	257	2	NA	NA	45	21237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.20565096031518	15	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACAGGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	45622698	45595741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45596384_45596744_45596877_45602916_45603604_45616503_45617145_45622648
69781	chr8	+	383	1	Intergenic	novelGene_1618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCATGCTGGAACTTCAG	NA	False	NA	NA	False	NA	NA	NA	34496423	34496806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_34496400_34496800
69782	chr14	+	1034	7	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	8	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	259.846589356105	2	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAAGCTTATGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	122419123	122639640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122419194_122548655_122548843_122608652_122608802_122615236_122615290_122616614_122616783_122621609_122621735_122639358
69783	chr2	+	1268	10	FSM	ENSMUSG00000004085.15	ENSMUST00000150126.8	1227	10	-9	-32	4	32	multi-exon	FALSE	canonical	3	24	junction_9	4.98887651569859	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATGCATAGTGTTAG	3365	False	NA	NA	False	NA	NA	NA	72116111	72220215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813
69784	chr2	-	947	11	NNC	ENSMUSG00000034278.4	novel	1008	11	NA	NA	5	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	121.96642980755	3	35	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAACAGTCTACTTTT	NA	False	NA	NA	False	NA	NA	NA	119039271	119002990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011447_119014073_119014177_119014397_119014436_119016176_119016265_119016509_119016569_119016826_119016897_119039168
69785	chr15	-	1191	1	Intergenic	novelGene_3326	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATCCACTGCAATGTAAA	NA	False	NA	NA	False	NA	NA	NA	79847439	79846248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_79846200_79847400
69786	chr11	+	377	2	Intergenic	novelGene_2365	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGTTCTCTGGCCCTCG	NA	False	NA	NA	False	NA	NA	NA	57682104	57685638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57682282_57685438
69788	chr7	-	1286	1	Intergenic	novelGene_2894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGCTGCTGTAAGGCATTT	NA	False	NA	NA	False	NA	NA	NA	24109917	24108631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_24108600_24109900
69789	chr7	-	2064	8	NNC	ENSMUSG00000036989.17	novel	3016	12	NA	NA	-762	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.2798933014238	18	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCAAGGTGTTTTTGCTA	NA	False	NA	NA	False	NA	NA	NA	105267995	105259865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_105260421_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872
69790	chr11	+	1339	4	NIC	ENSMUSG00000062115.16	novel	6921	5	NA	NA	46	-7	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	8.9566858950296	8	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGAAGTGTGCGGCCT	NA	False	NA	NA	False	NA	NA	NA	60066750	60090014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_60066788_60084764_60084859_60088614_60088665_60088856
69791	chr2	+	1264	6	NNC	ENSMUSG00000026921.21	novel	1865	10	NA	NA	946	10653	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	160	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCCCCCTCCCTCTCCCA	6635	False	NA	NA	False	NA	NA	NA	26483104	26493785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26483774_26484790_26484867_26486093_26486188_26486302_26486477_26487210_26487350_26493673
69792	chr9	+	860	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	-20	3	-20	-3	multi-exon	FALSE	canonical	3	39	junction_1	1.5	311	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAACTGTGGCTGATACTT	NA	False	NA	NA	False	NA	NA	NA	58362384	58376915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_58362640_58374083_58374201_58376427
69793	chr3	-	1437	1	Antisense	novelGene_ENSMUSG00000106022.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTCAAGTCACTTGTA	8917	False	NA	NA	False	NA	NA	NA	121223512	121222075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_121222100_121223500
69794	chr17	-	1693	7	FSM	ENSMUSG00000024325.9	ENSMUST00000025183.9	2034	7	49	292	21	0	multi-exon	FALSE	canonical	3	63	junction_3	8.5764535535124	31	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCAGTTCTCTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	34243605	34240057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34240458_34240656_34240931_34241269_34241660_34241952_34242169_34242266_34242428_34243262_34243393_34243483
69795	chr5	+	1785	11	NNC	ENSMUSG00000029154.14	novel	620	3	NA	NA	-10691	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.774596669241483	17	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGACTTGTGATTATTT	NA	False	NA	NA	False	NA	NA	NA	73576982	73610778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_73577309_73577400_73577481_73578796_73578923_73581257_73581338_73585909_73586016_73587754_73587891_73589166_73589317_73591566_73591712_73595777_73595840_73598647_73598804_73610360
69798	chr1	-	1573	12	NNC	ENSMUSG00000026603.14	novel	1680	12	NA	NA	-8	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	98.8538448651751	159	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGAAGCCTTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	189654458	189612696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_189613064_189614305_189614415_189616020_189616199_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
69803	chr2	+	1444	5	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	1416	550	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	14.1686273153048	64	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAAAGCACTTGCCTAG	NA	False	NA	NA	False	NA	NA	NA	71551176	71561860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71551288_71553630_71553841_71559999_71560200_71560693_71560778_71561021
69804	chr11	+	845	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	-1	-482	-1	235	multi-exon	FALSE	canonical	3	21	junction_1	125	53	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATTTCAGTTAGTA	NA	False	NA	NA	False	NA	NA	NA	76298015	76305390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76298269_76301952_76302026_76304871
69806	chr6	+	2400	16	NNC	ENSMUSG00000056215.14	novel	3058	20	NA	NA	-19	6616	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	1.65193489244852	13	32	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATTTCAAGGGGCGAG	NA	False	NA	NA	False	NA	NA	NA	34006363	34093848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_34006689_34013435_34013544_34016242_34016325_34020339_34020441_34025793_34025876_34033005_34033131_34039285_34039430_34047995_34048077_34049304_34049396_34050650_34050758_34055598_34055719_34063310_34063408_34067106_34067221_34069671_34069874_34072458_34072555_34093323
69809	chr1	-	2146	1	ISM	ENSMUSG00000037624.16	ENSMUST00000079451.13	3297	7	134101	16	5126	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	9	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTAATTAAAATCAGCTC	NA	False	NA	NA	False	NA	NA	NA	188942288	188940142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_188940100_188942300
69810	chr11	+	569	1	Genic_Genomic	ENSMUSG00000003581.15	novel	NA	NA	NA	NA	5107	5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTAAGACATAAATCTG	NA	False	NA	NA	False	NA	NA	NA	4090608	4091177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_4090600_4091200
69811	chr11	+	1358	6	FSM	ENSMUSG00000019301.6	ENSMUST00000019445.6	1339	6	-26	7	-26	-7	multi-exon	FALSE	canonical	1	1	junction_2	8.26075057122535	106	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTATCATGTGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	100969210	100971346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100969365_100969451_100969620_100969754_100969935_100970014_100970109_100970485_100970661_100970759
69813	chr7	+	735	7	NIC	ENSMUSG00000078765.12	novel	781	7	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	54	junction_6	252.092575588149	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCAATCAAGGTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	30262761	30264778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
69815	chr4	+	1239	1	Genic_Genomic	ENSMUSG00000085101.8	novel	NA	NA	NA	NA	-12	-21094	mono-exon	FALSE	NA	NA	NA	NA	NA	6	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAAGGTTCAGACCAGCA	NA	False	NA	NA	False	NA	NA	NA	145136802	145138041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_145136800_145138000
69817	chr5	-	2379	17	Antisense	novelGene_ENSMUSG00000106311.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGAGGGATTCATGGCGG	NA	False	NA	NA	False	NA	NA	NA	30524023	30486464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_30486603_30499005_30499093_30500008_30500123_30502832_30503017_30504397_30504536_30506004_30506092_30507742_30507865_30512479_30512620_30512952_30513089_30513606_30513840_30515804_30515919_30516910_30517002_30517344_30517430_30520344_30520623_30521302_30521440_30521725_30521833_30523835
69818	chr15	-	742	6	NNC	ENSMUSG00000022404.9	novel	869	5	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.006666498325	102	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCATGAAAGTTGCTCTT	6884	False	NA	NA	False	NA	NA	NA	81244977	81203115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81203357_81213246_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
69819	chrX	-	1515	4	Antisense	novelGene_ENSMUSG00000083906.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTTAAAATAGAGCAATTA	NA	False	NA	NA	False	NA	NA	NA	158376045	158350093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158350361_158350912_158351009_158357938_158358112_158375066
69820	chr6	+	1604	3	NIC	ENSMUSG00000085058.3	novel	370	4	NA	NA	20	-6	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	0.5	8	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCAGAACACAGCATTGT	NA	False	NA	NA	False	NA	NA	NA	39504479	39521414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_39504579_39506625_39506754_39520037
69821	chr2	-	521	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-1	-722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	134.554408656457	1	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATAAGCGAACACAT	NA	False	NA	NA	False	NA	NA	NA	177476440	177474305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177474330_177474581_177474890_177476043_177476105_177476312
69822	chr8	-	983	8	Fusion	ENSMUSG00000048967.17_ENSMUSG00000036199.10	novel	785	6	NA	NA	904	-1	multi-exon	TRUE	canonical	2	10	junction_1	2773.96888730842	13	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTGCCTCTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	70354304	70340438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_70340673_70341636_70341788_70341858_70341973_70342092_70342204_70343515_70343625_70347153_70347226_70347891_70347971_70354191
69824	chr17	-	792	2	FSM	ENSMUSG00000092564.3	ENSMUST00000172526.3	978	2	47	139	47	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	122	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATATTCCCTTTTAC	1301	False	NA	NA	False	NA	NA	NA	34128105	34127156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34127561_34127717
69826	chr7	-	2233	2	FSM	ENSMUSG00000047371.8	ENSMUST00000060783.7	2356	2	116	7	116	-7	multi-exon	FALSE	canonical	3	6	junction_1	0	14	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTAAGAGATTCGTCCTT	5437	False	NA	NA	False	NA	NA	NA	126944479	126941973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126944048_126944320
69827	chr11	+	761	6	NNC	ENSMUSG00000018286.7	novel	798	6	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2339.24488671024	7	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTTCTGTGTGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	70416211	70418477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418043_70418150_70418262
69830	chr7	+	802	3	Antisense	novelGene_ENSMUSG00000064179.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGCGTGTGTGTGTGTGT	6656	False	NA	NA	False	NA	NA	NA	4507581	4511061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_4507802_4510381_4510425_4510522
69833	chr11	+	848	2	ISM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	38098	1554	38098	-1554	3prime_fragment	FALSE	canonical	2	4	junction_1	0	29	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGAACAGGCTGGGCTAG	5328	False	NA	NA	False	NA	NA	NA	103703073	103707229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_103703595_103706902
69835	chr11	-	2354	1	Genic_Genomic	ENSMUSG00000025134.3	novel	NA	NA	NA	NA	2347	1164	mono-exon	FALSE	NA	NA	NA	NA	NA	14	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAAAAAGTGACCATG	9361	False	NA	NA	False	NA	NA	NA	120484136	120481782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_120481800_120484100
69836	chr2	-	2149	8	Antisense	novelGene_ENSMUSG00000027367.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	99	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGAAGCGTCCGAGCAGG	3008	False	NA	NA	False	NA	NA	NA	127140436	127112697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_127112800_127126012_127126224_127126452_127126499_127132688_127132801_127132876_127132958_127134068_127134169_127137401_127137488_127139025
69837	chr8	+	978	4	ISM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	-11	7	-11	-7	intron_retention	FALSE	canonical	3	392	junction_2	12.9614813968157	1049	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGCTAACGGCCGTG	274	False	NA	NA	False	NA	NA	NA	106053008	106055677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953
69838	SIRV6	-	362	4	Genic_Genomic	SIRV6C_SIRV6B	novel	189	1	NA	NA	-8684	-99	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTTCAACAGTACTTCG	NA	False	NA	NA	False	NA	NA	NA	11231	1643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV6_-_1735_1844_2030_2470_2489_11163
69840	chr16	-	1562	6	FSM	ENSMUSG00000022754.7	ENSMUST00000023435.6	2701	6	36	1103	36	226	multi-exon	FALSE	canonical	1	3	junction_5	1.32664991614216	18	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCATTTTTTTTTTCTTA	6338	False	NA	NA	False	NA	NA	NA	56706493	56626626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_56627140_56631888_56632035_56642587_56642773_56643750_56643958_56646028_56646222_56706175
69841	chr11	+	1604	1	NIC	ENSMUSG00000020346.17	novel	3151	4	NA	NA	319	1693	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCATGGTTGCCGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	49136376	49137980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_49136400_49138000
69842	chrX	-	1191	10	NIC	ENSMUSG00000031370.13	novel	2735	11	NA	NA	28	1	combination_of_known_junctions	FALSE	canonical	3	79	junction_9	293.086428073679	56	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATACTCTTTTATTTCATT	NA	False	NA	NA	False	NA	NA	NA	162741629	162722962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
69843	chrX	-	796	5	Antisense	novelGene_ENSMUSG00000042271.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAACGTCACTGCGCGTG	NA	False	NA	NA	False	NA	NA	NA	141020954	141009768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_141009927_141011284_141011377_141012518_141012607_141019779_141019924_141020640
69845	chr13	-	2211	11	Antisense	novelGene_ENSMUSG00000019726.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACACACCTTGCTGAGAAA	NA	False	NA	NA	False	NA	NA	NA	13871247	13845399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_13845524_13847838_13848038_13848912_13849044_13852230_13852848_13853545_13853726_13854657_13854828_13855876_13856108_13857639_13857807_13858542_13858684_13862197_13862393_13871191
69846	chr1	-	658	6	NNC	ENSMUSG00000058076.13	novel	3171	6	NA	NA	4787	119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	375.424772757473	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGTATTAAGTTTCT	5258	False	NA	NA	False	NA	NA	NA	170973370	170956856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_170956868_170957201_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324
69848	chr2	-	1091	9	ISM	ENSMUSG00000026928.15	ENSMUST00000100303.10	1947	12	2117	15	2117	-4	3prime_fragment	FALSE	canonical	3	13	junction_2	6.02987354759617	31	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGCCTGTTGGTTGGATA	NA	False	NA	NA	False	NA	NA	NA	26247642	26242202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_26242424_26242496_26242574_26242952_26243027_26244368_26244418_26244841_26244884_26245344_26245537_26246769_26246896_26247196_26247341_26247476
69850	chr19	+	1957	1	NIC	ENSMUSG00000097787.3	novel	1647	2	NA	NA	13	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	26	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATTCTAACACTACTTC	NA	False	NA	NA	False	NA	NA	NA	32366628	32368585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_32366600_32368600
69852	chr1	+	1429	3	Antisense	novelGene_ENSMUSG00000026656.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGGCTGGCAAAAGCGGA	NA	False	NA	NA	False	NA	NA	NA	170788635	170795372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_170788674_170788769_170788805_170794016
69853	chr10	+	2172	1	Genic_Genomic	ENSMUSG00000090112.9	novel	NA	NA	NA	NA	3679	1258	mono-exon	FALSE	NA	NA	NA	NA	NA	3	97	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTCAAATCCCAGCAACC	NA	False	NA	NA	False	NA	NA	NA	11084441	11086613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_11084400_11086600
69854	chr16	+	907	2	NNC	ENSMUSG00000051483.10	novel	1237	3	NA	NA	-6	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATGCACAGAGGTTTACA	NA	False	NA	NA	False	NA	NA	NA	93404718	93407218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93405090_93406682
69855	chr19	+	1836	10	FSM	ENSMUSG00000075296.6	ENSMUST00000143380.3	2142	10	236	70	236	-70	multi-exon	TRUE	canonical	1	2	junction_3	1.85259244450367	7	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTGGTGGAATCTCAGT	NA	False	NA	NA	False	NA	NA	NA	4022563	4031576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4022614_4027498_4027662_4028060_4028172_4028413_4028535_4028652_4028739_4028850_4028933_4029229_4029617_4030005_4030173_4030691_4030792_4031007
69856	chr6	+	1754	3	Antisense	novelGene_ENSMUSG00000030168.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGGATTCTTGTGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	119385526	119394430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_119385615_119392724_119393089_119393128
69857	chr12	-	1515	5	FSM	ENSMUSG00000071178.12	ENSMUST00000186166.7	1762	5	247	0	247	0	multi-exon	FALSE	canonical	0	0	junction_2	0.82915619758885	17	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTTGACTCTGTGGGTTT	7616	False	NA	NA	False	NA	NA	NA	103706527	103694414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_103694693_103695489_103695641_103696508_103696780_103698219_103698852_103706344
69858	chr6	-	1022	1	FSM	ENSMUSG00000100164.2	ENSMUST00000185414.2	1042	1	1	19	1	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	84	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTTTTTTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	86826421	86825399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86825400_86826400
69859	chr2	-	762	1	ISM	ENSMUSG00000038400.16	ENSMUST00000036248.13	4538	4	51302	12	9491	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGAGTGAATTTTCTCC	NA	False	NA	NA	False	NA	NA	NA	173067024	173066262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_173066300_173067000
69862	chr7	-	1347	6	FSM	ENSMUSG00000047586.5	ENSMUST00000239002.2	1531	6	173	11	173	-11	multi-exon	FALSE	canonical	3	10	junction_1	2.92574776766556	22	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTAAGAAACATGTGCTC	NA	False	NA	NA	False	NA	NA	NA	28246506	28243031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28243698_28243846_28243986_28244663_28244760_28245580_28245633_28245714_28245778_28246175
69863	chrX	-	1611	13	Antisense	novelGene_ENSMUSG00000031303.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	23	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTTGCGATACCTATAAT	NA	False	NA	NA	False	NA	NA	NA	158898235	158858603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158858700_158859117_158859302_158862913_158863061_158864780_158864888_158866858_158866908_158869311_158869407_158872796_158872886_158874574_158874709_158877289_158877428_158880976_158881099_158881311_158881419_158895397_158895558_158898052
69867	chr1	-	902	6	ISM	ENSMUSG00000062963.11	ENSMUST00000144576.8	822	7	144	-131	143	0	3prime_fragment	FALSE	canonical	3	36	junction_3	231.021211147375	1667	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	7510	False	NA	NA	False	NA	NA	NA	171122370	171116135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117427_171117521_171117721_171117790_171122206
69869	chr8	-	1318	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_7	45.9436211734623	360	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	NA	False	NA	NA	NA	106434840	106430282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
69870	chr17	-	2613	1	NIC	ENSMUSG00000024242.16	novel	4231	35	NA	NA	-14887	-15272	mono-exon	FALSE	NA	NA	NA	NA	NA	2	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTGAGCTTACATCAGAG	NA	False	NA	NA	False	NA	NA	NA	80905830	80903217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80903200_80905800
69871	chr19	+	374	1	Antisense	novelGene_ENSMUSG00000040929.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCACACATACAATCTCTA	NA	False	NA	NA	False	NA	NA	NA	27739197	27739571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_27739200_27739600
69872	chr8	-	982	10	NNC	ENSMUSG00000008892.13	novel	1354	9	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	685.818858134449	28	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	23083767	23067101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_23067200_23067564_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
69874	chr8	+	876	1	Intergenic	novelGene_1680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATGCATAAATAAATGCA	NA	False	NA	NA	False	NA	NA	NA	84614029	84614905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_84614000_84614900
69877	chr4	+	949	2	Antisense	novelGene_ENSMUSG00000028753.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	10	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATAAACTTAGAACAAAGGA	1188	False	NA	NA	False	NA	NA	NA	138306051	138307232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_138306187_138306418
69878	chr10	+	1140	6	Antisense	novelGene_ENSMUSG00000020076.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGCTGGGCGGCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	62476090	62486965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62476412_62476523_62476638_62478550_62478727_62479072_62479154_62482694_62482983_62486805
69879	chr9	+	2785	1	Intergenic	novelGene_1144	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	82	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTACTAGGGCACTCGTA	NA	False	NA	NA	False	NA	NA	NA	98698320	98701105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_98698300_98701100
69881	chr8	-	461	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	-44	39	-44	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	7	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCAGGGGCTGAACTGT	NA	False	NA	NA	False	NA	NA	NA	107989924	107989463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107989500_107989900
69882	chr17	+	1267	10	ISM	ENSMUSG00000116953.2	ENSMUST00000231723.2	1586	11	592	233	0	-196	3prime_fragment	FALSE	canonical	0	0	junction_6	81.1525008552523	1	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTGTTTGTAAAACTTAG	NA	False	NA	NA	False	NA	NA	NA	15199760	15209440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159
69883	chr2	+	815	7	ISM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	27	3677	27	-3677	5prime_fragment	FALSE	canonical	0	0	junction_4	1.24721912892465	34	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCGCCCGTGAAGATCT	NA	False	NA	NA	False	NA	NA	NA	117080246	117098344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655_117090835_117093319_117093401_117094303_117094421_117098260
69884	chr2	+	573	1	ISM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	21218	11	12175	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	81	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTCTTTATTTCACTGT	NA	False	NA	NA	False	NA	NA	NA	117101437	117102010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_117101400_117102000
69885	chr2	+	1302	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	188	759	-5	237	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCACTGATGTATCATCT	NA	False	NA	NA	False	NA	NA	NA	78699578	78750878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
69886	chr15	+	360	2	Antisense	novelGene_ENSMUSG00000022370.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTAAACATGTCAAGGCC	NA	False	NA	NA	False	NA	NA	NA	55397497	55402549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_55397734_55402425
69888	chr4	-	829	3	FSM	ENSMUSG00000044303.7	ENSMUST00000060501.5	852	3	23	0	23	0	multi-exon	FALSE	canonical	0	0	junction_2	2.5	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATTTTTAGCATAGAAAT	NA	False	NA	NA	False	NA	NA	NA	89200406	89192707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_89193012_89194881_89195223_89200222
69889	chr14	-	2115	2	Antisense	novelGene_ENSMUSG00000022136.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTTTCATGAACTGCAC	NA	False	NA	NA	False	NA	NA	NA	119202808	119199073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_119200313_119201932
69890	chr15	-	2202	1	Antisense	novelGene_ENSMUSG00000022191.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACCTGACAGACATCAGAA	NA	False	NA	NA	False	NA	NA	NA	12887387	12885185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12885200_12887400
69891	chr1	+	388	1	FSM	ENSMUSG00000064281.8	ENSMUST00000121059.2	591	1	-28	231	-28	-231	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCCTGTACCTGAAGGT	NA	False	NA	NA	False	NA	NA	NA	84989806	84990194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_84989800_84990200
69893	chr9	+	372	2	ISM	ENSMUSG00000032399.9	ENSMUST00000213760.2	596	4	808	-249	808	-147	3prime_fragment	FALSE	canonical	3	19805	junction_1	0	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	297	False	NA	NA	False	NA	NA	NA	64085224	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64085300_64085504
69894	chr4	-	1002	3	FSM	ENSMUSG00000039759.11	ENSMUST00000105665.3	832	3	-27	-143	0	-20	multi-exon	FALSE	canonical	3	60	junction_1	59.5	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATCTTTTGAAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	152073454	152067115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_152067810_152070125_152070319_152073339
69896	chr7	-	1293	1	ISM	ENSMUSG00000034071.16	ENSMUST00000080348.12	2591	4	6250	56	5938	54	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGAATCCCAGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	12150428	12149135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_12149100_12150400
69898	chr2	-	957	3	Intergenic	novelGene_2826	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_1	2	19	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGGTAAGGCTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	172698971	172692908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_172693025_172696403_172696845_172698571
69899	chr2	-	652	1	Intergenic	novelGene_2825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGAAGTAGGCTGGGAAA	NA	False	NA	NA	False	NA	NA	NA	172691112	172690460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_172690500_172691100
69900	chr18	+	2542	1	ISM	ENSMUSG00000103332.2	ENSMUST00000193869.2	4689	4	9	170367	9	-170367	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAGAAGAAACCCCTC	NA	False	NA	NA	False	NA	NA	NA	37802014	37804556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_37802000_37804600
69904	chr3	-	1598	1	Intergenic	novelGene_3135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTCCCTTTCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	68415915	68414317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_68414300_68415900
69905	chr17	-	385	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2381.91758043808	15	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACATGTCCACTTGT	NA	False	NA	NA	False	NA	NA	NA	27854214	27849404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853078_27853343_27853450_27854177
69908	chr16	-	765	5	FSM	ENSMUSG00000023791.19	ENSMUST00000147688.8	713	5	-13	-39	7	0	multi-exon	FALSE	canonical	3	25	junction_2	176.233332545237	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	31918538	31903237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31915817_31915882_31918287
69910	chr8	+	1031	6	NIC	ENSMUSG00000023235.15	novel	867	8	NA	NA	2547	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	6.96850055607374	56	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTAAAAAGTAATGACTGA	NA	False	NA	NA	False	NA	NA	NA	4377787	4409998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_4377851_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
69912	chr7	+	651	8	NNC	ENSMUSG00000078765.12	novel	884	8	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	285.592045278804	8	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGGTTTCCTTCCAC	NA	False	NA	NA	False	NA	NA	NA	30262727	30264789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263895_30264033_30264127_30264224_30264519_30264647_30264750
69913	chr7	+	1390	1	ISM	ENSMUSG00000097023.9	ENSMUST00000181511.9	3412	3	31085	1812	3352	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTCTTGTTTGTATAT	NA	False	NA	NA	False	NA	NA	NA	79180949	79182339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79180900_79182300
69914	chr2	+	1430	5	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	-21	534	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	13.6014705087354	7	31	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGCTGTGACTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	71549739	71561844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71549853_71553633_71553841_71559996_71560200_71560693_71560778_71561021
69915	chr7	+	1232	1	Intergenic	novelGene_3026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAAAACTTAATCCAG	NA	False	NA	NA	False	NA	NA	NA	116331362	116332594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_116331400_116332600
69916	chr5	-	447	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	224	-35	224	35	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92288564	92288117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92288100_92288600
69917	chr1	+	333	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	9	4	3	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	78	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGTGAAGTGTGCATT	NA	False	NA	NA	False	NA	NA	NA	160862744	160866105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
69918	chr1	+	805	2	Genic_Genomic	ENSMUSG00000079139.5	novel	1231	1	NA	NA	109	169	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGCAAAACTCAAAAAAAAAT	4270	False	NA	NA	False	NA	NA	NA	135159841	135161132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_135160272_135160757
69919	chr9	-	1477	1	FSM	ENSMUSG00000111547.2	ENSMUST00000217520.2	1484	1	-10	17	-10	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	21	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTACAGATTTATTCACA	2666	False	NA	NA	False	NA	NA	NA	20518922	20517445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20517400_20518900
69920	chr2	-	1496	1	NIC	ENSMUSG00000047617.12	novel	981	7	NA	NA	2	20	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCTCGGGGAGAGATGC	5324	False	NA	NA	False	NA	NA	NA	25351018	25349522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25349500_25351000
69923	chr2	+	1165	6	Fusion	ENSMUSG00000086202.2_ENSMUSG00000086710.2	novel	635	4	NA	NA	0	19802	intron_retention	FALSE	canonical	1	1	junction_2	5.84465567848098	31	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTTGAATTTGAATT	NA	False	NA	NA	False	NA	NA	NA	45586616	45663125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_45586642_45586810_45587155_45616402_45616564_45624962_45625071_45651624_45651718_45662691
69925	chr11	-	653	1	Intergenic	novelGene_2231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACAATCTAACAGGTGGG	314	False	NA	NA	False	NA	NA	NA	20089328	20088675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_20088700_20089300
69926	chr7	-	1193	1	Intergenic	novelGene_2891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTCTAAAGATCCAGACT	NA	False	NA	NA	False	NA	NA	NA	23965744	23964551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_23964600_23965700
69927	chr17	+	1299	3	FSM	ENSMUSG00000035678.9	ENSMUST00000039490.9	1290	3	-8	-1	-8	1	multi-exon	FALSE	canonical	2	4	junction_1	0	27	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGCCTTTTATTATTTT	17	False	NA	NA	False	NA	NA	NA	57412316	57414758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57412861_57413249_57413287_57414040
69928	chr1	-	958	4	NNC	ENSMUSG00000098234.8	novel	473	4	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	295.388256743937	69	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGAGCTGCGGACTTTT	NA	False	NA	NA	False	NA	NA	NA	10014342	10012190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_10012381_10012547_10012617_10012834_10012943_10013751
69929	chr4	-	1561	9	ISM	ENSMUSG00000028849.18	ENSMUST00000125981.8	2363	12	5206	0	-129	0	3prime_fragment	FALSE	canonical	3	231	junction_7	24.7761856426691	44	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACGTGTCCTTGGATCTG	NA	False	NA	NA	False	NA	NA	NA	126128698	126125959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_126126560_126126660_126126855_126126968_126127060_126127157_126127201_126127385_126127440_126127685_126127791_126127890_126128030_126128115_126128312_126128559
69930	chr18	+	1691	10	FSM	ENSMUSG00000024395.10	ENSMUST00000025254.9	1870	10	175	4	154	-4	multi-exon	FALSE	canonical	0	0	junction_1	2.89742329120118	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTCGGAGTGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	32064552	32091668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32064604_32074792_32074953_32077191_32077259_32077488_32077610_32087488_32087639_32088310_32088462_32089310_32089404_32090005_32090055_32090290_32090367_32090895
69931	chr17	+	974	7	NNC	ENSMUSG00000025739.14	novel	719	3	NA	NA	1528	1796	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	41	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAGCCAGTCGAGGGCAC	NA	False	NA	-16	True	NA	NA	NA	25938029	25940176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25938259_25938341_25938400_25938625_25938760_25938841_25938992_25939581_25939700_25939792_25939925_25940023
69934	chr7	+	1018	7	NNC	ENSMUSG00000039745.9	novel	1338	6	NA	NA	10	6	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	95.5539405548277	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGGAGAAACCCTGT	9928	False	NA	NA	False	NA	NA	NA	49408910	49423729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048_49423188_49423503
69935	chr11	+	1308	1	Intergenic	novelGene_2241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAATCCTTCCCCCAAAT	2724	False	NA	NA	False	NA	NA	NA	30888139	30889447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_30888100_30889400
69937	chr8	+	1792	1	Intergenic	novelGene_1657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGTTTGGGGATGCATA	NA	False	NA	NA	False	NA	NA	NA	70918469	70920261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_70918500_70920300
69939	chrX	+	3215	14	FSM	ENSMUSG00000042498.17	ENSMUST00000113030.3	3736	14	521	0	521	0	multi-exon	FALSE	canonical	0	0	junction_3	1.76084971419378	3	37	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAAGTCTTTTGGTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	138381640	138455331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_138381888_138393389_138393533_138395792_138395986_138407440_138407550_138407749_138407842_138407943_138408067_138412293_138412399_138413891_138414057_138414982_138415144_138415834_138416011_138432466_138432529_138443684_138443976_138445775_138445944_138454151
69941	chr1	-	1790	6	FSM	ENSMUSG00000026102.10	ENSMUST00000027271.9	5767	6	-21	3998	-21	243	multi-exon	FALSE	canonical	2	5	junction_1	1.49666295470958	23	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAACTGTACAGTTCAA	NA	False	NA	NA	False	NA	NA	NA	52856868	52828583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_52829377_52830846_52831022_52833628_52833830_52836199_52836261_52838443_52838696_52856560
69942	chr19	+	2353	1	ISM	ENSMUSG00000025010.15	ENSMUST00000025983.13	3819	6	14907	34	14878	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	21	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGATTTTAAAATAAAAGT	2638	False	NA	NA	False	NA	NA	NA	40834629	40836982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_40834600_40837000
69944	chr4	-	583	3	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-2	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	520	1184	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGTGGGTTTTATTTAG	2490	False	NA	NA	False	NA	NA	NA	129229165	129203301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203674_129228381_129228438_129229010
69945	chr16	+	1338	3	Intergenic	novelGene_3874	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2	15	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTGCATGTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	94544917	94547369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_94545201_94545999_94546070_94546384
69947	chr13	-	1095	8	NIC	ENSMUSG00000021552.8	novel	1523	12	NA	NA	-217	18	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	57.9531830754052	4	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTCAATAAAATTAATTTAC	NA	False	NA	NA	False	NA	NA	NA	58412009	58381190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58403560_58403685_58407247_58407326_58411011_58411156_58411755
69949	chrX	-	365	1	Intergenic	novelGene_3992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAGAAAGAAAGAAACCA	NA	False	NA	NA	False	NA	NA	NA	100478952	100478587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_100478600_100479000
69950	chr12	+	1217	3	NNC	ENSMUSG00000066438.7	novel	956	2	NA	NA	-28	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7	80	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTACTGGTTTCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	80768477	80770987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_80768870_80769092_80769460_80770529
69952	chr2	-	1366	1	Antisense	novelGene_ENSMUSG00000027075.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCGCTGTTGTCATTATT	8280	False	NA	NA	False	NA	NA	NA	84670563	84669197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_84669200_84670600
69954	chr19	+	1251	1	ISM	ENSMUSG00000034765.7	ENSMUST00000038287.7	2473	4	12061	11	12061	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCAAGTGCTTGATCCT	456	False	NA	NA	False	NA	NA	NA	53529600	53530851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_53529600_53530900
69955	chr19	-	688	6	NNC	ENSMUSG00000024953.18	novel	1262	6	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_5	187.679514065867	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTACAGGGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	6887339	6884073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6887265
69956	chr5	+	1946	1	Antisense	novelGene_ENSMUSG00000029202.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	55	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGACATCTGCATTATTCT	8860	False	NA	NA	False	NA	NA	NA	65790287	65792233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_65790300_65792200
69958	chr2	-	895	5	Fusion	ENSMUSG00000078861.9_ENSMUSG00000078862.11	novel	1372	3	NA	NA	-12	102419	multi-exon	TRUE	non_canonical	0	0	junction_1	21.5682057668226	1	44	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGCTATATAAGTTTATAAA	NA	False	NA	NA	False	NA	NA	NA	177720230	177475366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_177475580_177589521_177589642_177711025_177711409_177711615_177711743_177720178
69959	chr4	+	2456	1	Intergenic	novelGene_1837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCCCAAAGTGTAAGT	5164	False	NA	NA	False	NA	NA	NA	44776605	44779061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_44776600_44779100
69960	chr4	+	909	6	FSM	ENSMUSG00000028865.15	ENSMUST00000105910.2	986	6	71	6	71	-6	multi-exon	FALSE	canonical	3	29	junction_1	9.2736184954957	139	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGATTCCTGACCTATGT	NA	False	NA	NA	False	NA	NA	NA	132948191	132951860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132948379_132948753_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
69962	chr7	+	706	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	33	-3	33	3	multi-exon	FALSE	canonical	3	1139	junction_1	0	5959	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCCTGTGTTGAGTTCG	NA	False	NA	NA	False	NA	NA	NA	140547985	140549741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140548352_140549401
69963	chr11	+	2384	17	NNC	ENSMUSG00000020681.15	novel	4906	25	NA	NA	-1363	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	2.23519434278096	15	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCCTCCCCCACACCTG	NA	False	NA	NA	False	NA	NA	NA	105864670	105880072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_105864704_105864929_105865053_105865492_105865705_105866361_105866499_105867370_105867530_105867777_105867866_105869995_105870140_105870306_105870499_105872323_105872422_105872593_105872767_105875870_105876095_105876398_105876544_105876815_105876915_105878841_105878965_105879254_105879443_105879627_105879791_105879989
69965	chr14	-	2025	1	Intergenic	novelGene_648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTGTCACAGTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	121751221	121749196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_121749200_121751200
69967	chr5	-	814	2	Antisense	novelGene_ENSMUSG00000063430.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	30	junction_1	0	136	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCATGTCTATGTGCAAT	NA	False	NA	NA	False	NA	NA	NA	113734518	113711251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_113711932_113734384
69968	chr6	+	1406	5	NNC	ENSMUSG00000059659.8	novel	907	5	NA	NA	64	1	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	2.91547594742265	61	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAATTGTTATTCACTTG	NA	False	NA	NA	False	NA	NA	NA	128415783	128480245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_128416351_128416477_128416660_128465853_128465987_128479128_128479327_128479919
69969	chr8	-	447	4	NNC	ENSMUSG00000019362.9	novel	616	3	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	854.068433375739	80	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGCTGTTTGGTGCT	9835	False	NA	NA	False	NA	NA	NA	84976347	84972863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84973110_84973280_84973323_84976102_84976159_84976244
69974	chr11	+	337	1	ISM	ENSMUSG00000020610.18	ENSMUST00000125108.2	1846	6	4563	164	-2171	-164	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACCTTGTCCCAAACATC	NA	False	NA	NA	False	NA	NA	NA	109321370	109321707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_109321400_109321700
69975	chrX	-	574	6	NNC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	810.780611509673	150	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	72974408	72965726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72965870_72965956_72966045_72969821_72969886_72973788_72973869_72974013_72974124_72974319
69976	chr7	+	1337	15	NNC	ENSMUSG00000030982.20	novel	1552	15	NA	NA	-4	-3038	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_14	144.575663404944	68	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCAGCGGCAGGGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	118339965	118380240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118380143
69977	chr9	+	1002	2	Intergenic	novelGene_1139	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_1	0	56	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTATGGGAAAGCGAAAG	NA	False	NA	NA	False	NA	NA	NA	97157791	97164343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_97157969_97163518
69978	chr1	+	520	4	FSM	ENSMUSG00000062169.14	ENSMUST00000111059.2	3127	4	12	2595	12	18	multi-exon	FALSE	canonical	3	142	junction_3	804.702429473156	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCTGATTTCTGAACTC	NA	False	NA	NA	False	NA	NA	NA	180978507	180993964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180993745
69979	chr17	-	634	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	-7	0	1	0	multi-exon	FALSE	canonical	3	28	junction_4	82.996987897152	238	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8371	False	NA	NA	False	NA	NA	NA	26011368	26009479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
69980	chr11	+	2837	17	NNC	ENSMUSG00000036264.10	novel	4380	16	NA	NA	-134640	-1533	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.559016994374947	2	58	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCACAGACAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	52520820	53077832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52520952_52522582_52522691_52664661_52664798_52705451_52705486_52891023_52891270_52959366_52959561_52963219_52963344_53024853_53025021_53039708_53039830_53053361_53053524_53053843_53053979_53055237_53055265_53056580_53056700_53058997_53059148_53067743_53067852_53075462_53075573_53077067
69982	chrX	+	588	1	Antisense	novelGene_ENSMUSG00000036782.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGTAGCTCATGCGAGTT	NA	False	NA	NA	False	NA	NA	NA	23085535	23086123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_23085500_23086100
69984	chr9	-	674	2	NIC	ENSMUSG00000051234.7	novel	1232	3	NA	NA	8	411	combination_of_known_splicesites	FALSE	canonical	1	8	junction_1	0	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCCTAATCCTTTTTGT	3808	False	NA	NA	False	NA	NA	NA	96360633	96353404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_96353906_96360460
69985	chr10	+	514	4	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	31	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2970.23930947585	7	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2212	False	NA	NA	False	NA	NA	NA	81012495	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81013942_81018154
69986	chr13	-	1285	4	FSM	ENSMUSG00000094870.9	ENSMUST00000224946.2	1783	4	487	11	450	-11	multi-exon	FALSE	canonical	3	148	junction_3	5.73488351136175	7	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAAATTATTATTTTG	NA	False	NA	NA	False	NA	NA	NA	120251787	120237050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_120237986_120244307_120244453_120250395_120250498_120251684
69988	chr10	+	935	4	FSM	ENSMUSG00000040280.11	ENSMUST00000035735.11	934	4	-6	5	-6	-5	multi-exon	FALSE	canonical	3	101	junction_1	3.29983164553722	253	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAATTTGCTGCGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	127350829	127353018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127350908_127351267_127351357_127352133_127352195_127352311
69989	chr18	-	1956	10	NNC	ENSMUSG00000024588.11	novel	6571	11	NA	NA	-3934	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	134.820044668604	1	72	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCGGGCGCATAGCCTA	NA	False	NA	NA	False	NA	NA	NA	64616516	64590374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595275_64597152_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611727_64611842_64616404
69990	chr8	-	1071	7	FSM	ENSMUSG00000031809.11	ENSMUST00000183280.2	959	7	-70	-42	15	-6	multi-exon	FALSE	canonical	2	4	junction_4	3.09569593683445	27	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAATCCAGCCACTGACA	NA	False	NA	NA	False	NA	NA	NA	122268678	122257524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267267_122267320_122268457
69991	chr2	+	675	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	205	55	-5	1	multi-exon	FALSE	canonical	3	676	junction_1	80.8469060769936	3481	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCTCTATATTATTATT	4047	False	NA	NA	False	NA	NA	NA	170353359	170360988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
69993	chr12	-	1753	2	ISM	ENSMUSG00000050671.13	ENSMUST00000051601.6	1350	5	4644	-1038	4580	-6	3prime_fragment	FALSE	canonical	3	77	junction_1	0	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACAGTTTGATAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	87329267	87325417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_87326977_87329073
69998	chr6	-	1086	5	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5448	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	64.6896436842869	5	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTTTGTTCACCAAGGTA	2732	False	NA	NA	False	NA	NA	NA	83675077	83669805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670449_83671329_83671456_83672566_83672606_83672689_83672843_83674952
70001	chr1	+	744	4	NNC	ENSMUSG00000025925.15	novel	1581	9	NA	NA	-2	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	507.919284926257	3	32	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACGGTTTGTTCTATTCC	NA	False	NA	NA	False	NA	NA	NA	15875885	15913653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877961_15883264_15883341_15913377
70002	chr5	-	593	3	FSM	ENSMUSG00000049387.11	ENSMUST00000050129.6	542	3	-50	-1	-50	1	multi-exon	FALSE	canonical	3	51	junction_2	6	477	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAATAAGTTGTTGAAAACT	NA	False	NA	NA	False	NA	NA	NA	71705598	71600165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_71600613_71660793_71660857_71705515
70004	chr4	+	2002	5	ISM	ENSMUSG00000028466.16	ENSMUST00000126277.9	697	6	741	-344	578	74	3prime_fragment	TRUE	canonical	3	77	junction_1	10.5445483544816	2	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTCACGTGCTCTG	1297	False	NA	NA	False	NA	NA	NA	43564007	43566871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_43565368_43565466_43565536_43566119_43566205_43566293_43566379_43566468
70006	chr2	-	549	4	ISM	ENSMUSG00000017300.10	ENSMUST00000103095.5	700	6	1671	3	1671	-3	3prime_fragment	FALSE	canonical	1	1	junction_3	1.24721912892465	5	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGGCTTGACCGACTG	NA	False	NA	NA	False	NA	NA	NA	164619990	164619083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_164619254_164619391_164619529_164619650_164619766_164619863
70007	chr1	+	1531	8	FSM	ENSMUSG00000057715.14	ENSMUST00000171690.9	6158	8	92	4535	-72	645	multi-exon	FALSE	canonical	3	8	junction_7	6.29868791001389	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATGTAAAATATCAATGCA	NA	False	NA	NA	False	NA	NA	NA	11484420	11667500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374_11666542_11667188
70010	chr14	-	847	1	ISM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	8869	210	8869	-210	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCATAAATAAGTACTTCAA	NA	False	NA	NA	False	NA	NA	NA	26382169	26381322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_26381300_26382200
70011	chr9	+	726	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	54	448	54	-448	multi-exon	FALSE	canonical	3	413	junction_2	26	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATATATAAATCAGTTCA	1682	False	NA	NA	False	NA	NA	NA	64086609	64089966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64086703_64087780_64087871_64089423
70012	chr4	+	946	3	FSM	ENSMUSG00000007872.4	ENSMUST00000008016.3	1278	3	327	5	-40	-5	multi-exon	FALSE	canonical	3	22	junction_2	1.5	95	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGTATGACATCTTGC	732	False	NA	NA	False	NA	NA	NA	135871134	135872698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135871490_135871604_135871688_135872190
70019	chr17	-	1782	3	Fusion	ENSMUSG00000117637.2_ENSMUSG00000117275.2	novel	377	3	NA	NA	2547	324	multi-exon	FALSE	canonical	0	0	junction_2	0.5	4	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGTCCAAGATCTTGAAT	NA	False	NA	NA	False	NA	NA	NA	71920431	71915393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_71916899_71919734_71919919_71920338
70020	chr16	-	398	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	136	437	49	-6	multi-exon	FALSE	canonical	3	6062	junction_1	348	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGAACAGTTTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	37474679	37467968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_37468082_37469375_37469523_37474541
70021	chr14	-	765	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	53	1497	53	327	multi-exon	FALSE	canonical	3	53	junction_1	0	245	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGAAGGAGGCTGGTT	5358	False	NA	NA	False	NA	NA	NA	20133198	20127200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20127713_20132945
70022	chr9	+	1857	4	Intergenic	novelGene_1093	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_3	2.94392028877595	16	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGAGCTCTCTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	62557013	62562878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_62557364_62557826_62557945_62560928_62560991_62561551
70025	chr2	+	554	2	Antisense	novelGene_ENSMUSG00000085682.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	7	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGTTGGCTCAGCGGTTA	NA	False	NA	NA	False	NA	NA	NA	166338170	166342962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_166338330_166342567
70028	chr11	+	898	6	ISM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	6	1809	6	472	5prime_fragment	FALSE	canonical	3	1080	junction_1	119.652162537917	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTAAACTTTAAGGGTCA	1487	False	NA	NA	False	NA	NA	NA	58062492	58068582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042
70029	chr6	-	2188	1	ISM	ENSMUSG00000030020.14	ENSMUST00000113447.8	7679	8	194254	17	108280	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAATAAAAGGAATGT	NA	False	NA	NA	False	NA	NA	NA	92350093	92347905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_92347900_92350100
70030	chr6	+	1686	3	Antisense	novelGene_ENSMUSG00000004267.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCGGGGGGTGGGCAGGG	760	False	NA	NA	False	NA	NA	NA	124744283	124746512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124744559_124744660_124744758_124745198
70031	chr17	+	755	6	NNC	ENSMUSG00000023967.10	novel	884	6	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	441.378114545794	3	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGTGTGGTCAGTGCTTA	NA	False	NA	NA	False	NA	NA	NA	46421917	46439833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439550
70033	chr15	+	1318	8	ISM	ENSMUSG00000023484.15	ENSMUST00000024249.5	1757	9	776	3	-13	-3	3prime_fragment	FALSE	canonical	3	16	junction_1	6.19743198956682	37	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTACTGTGTTGGT	81	False	NA	NA	False	NA	NA	NA	98953837	98956851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_98954046_98954221_98954318_98954649_98954818_98954913_98955040_98955138_98955360_98955448_98955499_98955696_98955777_98956482
70034	chrX	+	924	9	NNC	ENSMUSG00000073245.11	novel	928	9	NA	NA	-6	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	3.49106001094224	139	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATGAAACAGAGTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	34667829	34690739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_34667977_34669423_34669544_34675151_34675219_34675757_34675793_34678902_34679029_34679340_34679405_34687606_34687689_34690137_34690237_34690555
70035	chr4	-	600	5	FSM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	12	-2	-6	0	multi-exon	FALSE	canonical	3	693	junction_3	25.1433390781734	1319	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	0	True	NA	NA	False	NA	NA	NA	43656454	43654226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905_43655047_43656358
70036	chr4	-	1220	5	NNC	ENSMUSG00000042763.10	novel	2727	4	NA	NA	6932	3956	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	134	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCTCCTCGGGGAGCAA	3146	False	NA	-1	True	NA	NA	NA	124749032	124745075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_124745151_124745483_124745601_124745692_124745811_124747664_124747807_124748264
70037	chr10	+	406	5	NNC	ENSMUSG00000063457.15	novel	500	4	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3321.21461215622	3	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTGGGTTTTTGTTTT	6349	False	NA	NA	False	NA	NA	NA	80128293	80129945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80128318_80128608_80128695_80129475_80129501_80129584_80129711_80129800
70038	chr3	+	914	5	NNC	ENSMUSG00000027952.17	novel	1194	5	NA	NA	82	26516	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	230.312152306386	270	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTGCTGTGGCTGTGTT	222	False	NA	NA	False	NA	NA	NA	89366506	89402836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89402534
70040	chr13	+	833	7	NNC	ENSMUSG00000021385.11	novel	4421	13	NA	NA	-14	-24848	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_6	51.3173676470473	41	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAATCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	49574710	49591529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49591351
70041	chr7	-	2858	1	Antisense	novelGene_ENSMUSG00000030852.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGACTCAGCCCTCAG	NA	False	NA	NA	False	NA	NA	NA	130299089	130296231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_130296200_130299100
70042	chr16	+	566	5	NNC	ENSMUSG00000022982.11	novel	641	5	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	341.387609616987	28	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTGTGACTCCTTTGA	NA	False	NA	NA	False	NA	NA	NA	90017640	90023218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022074_90023037
70044	chr18	+	1775	2	ISM	ENSMUSG00000024601.10	ENSMUST00000238139.2	1059	4	13313	-781	13313	781	3prime_fragment	FALSE	canonical	3	482	junction_1	0	1	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGAAATTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	58805864	58812037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_58806439_58810836
70045	chr3	-	495	2	NIC	ENSMUSG00000040269.6	novel	783	3	NA	NA	98	-8	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	0	57	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTCTTCCCTGCCGTG	NA	False	NA	NA	False	NA	NA	NA	8988880	8867213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_8867475_8988646
70046	chr14	+	905	8	NNC	ENSMUSG00000021932.14	novel	628	8	NA	NA	0	-496	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	338.239137720215	1	60	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCAGAAACAGAAACTTGC	NA	False	NA	NA	False	NA	NA	NA	62569573	62609945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591123_62598777_62598884_62601478_62601565_62609695
70048	chr11	+	737	4	ISM	ENSMUSG00000018449.13	ENSMUST00000151608.2	764	5	-210	392	92	-125	5prime_fragment	FALSE	canonical	3	248	junction_3	51.8480686450539	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATCTGGGAATCCTAAT	NA	False	NA	NA	False	NA	NA	NA	70861144	70864863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627
70050	chr11	-	672	4	NNC	ENSMUSG00000087165.8	novel	714	4	NA	NA	4028	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	12.8149218578274	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCATCTTGTCTCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	57688196	57686325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_57686621_57686851_57687000_57687137_57687224_57688053
70052	chr2	-	1322	3	FSM	ENSMUSG00000013523.14	ENSMUST00000152461.2	371	3	-25	-926	-25	-15	multi-exon	FALSE	canonical	3	30	junction_2	23.5	3	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACAGATTATGCGAATAC	4121	False	NA	NA	False	NA	NA	NA	170191740	170189082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_170190069_170191101_170191384_170191686
70053	chr8	+	600	4	NNC	ENSMUSG00000014856.13	novel	801	6	NA	NA	604	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	180.130199824707	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	601	False	NA	NA	False	NA	NA	NA	106053690	106055684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106053779_106054970_106055117_106055239_106055325_106055403
70054	chr11	+	770	2	ISM	ENSMUSG00000075702.11	ENSMUST00000131865.2	972	4	1798	-220	1633	-1	3prime_fragment	FALSE	canonical	3	143	junction_1	0	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCGGAGTCTCTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	3466499	3467350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_3466921_3467001
70055	chr4	-	523	1	Intergenic	novelGene_1903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGCAACCACATGTAATG	NA	False	NA	NA	False	NA	NA	NA	95893512	95892989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_95893000_95893500
70056	chr17	+	2075	16	NNC	ENSMUSG00000040828.11	novel	2557	22	NA	NA	4042	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	4.22163738639668	1	79	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATCAGGTTGCTAAGTGC	7489	False	NA	NA	False	NA	NA	NA	56939192	56971456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56939367_56940509_56940583_56943270_56943336_56948476_56948591_56954727_56954812_56958794_56958891_56959456_56959540_56960579_56960757_56961434_56961553_56962123_56962187_56962988_56963048_56967170_56967246_56968241_56968371_56969661_56969846_56970267_56970426_56971033
70057	chr11	+	923	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	-27	6	-27	-6	multi-exon	FALSE	canonical	3	117	junction_2	11	697	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAGCTAAGAGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	70342717	70344547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70342890_70343033_70343165_70343927
70058	chr9	+	1127	3	ISM	ENSMUSG00000033335.18	ENSMUST00000173397.8	3510	21	79644	15	-531	-1	3prime_fragment	FALSE	canonical	3	185	junction_2	235	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCCTACTGGTGGCTAC	4033	False	NA	NA	False	NA	NA	NA	21415871	21418419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21415959_21416759_21417012_21417631
70059	chr16	-	1259	1	Genic_Genomic	ENSMUSG00000022519.15	novel	NA	NA	NA	NA	29285	1083	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCACTCCACAGTCTTG	9068	False	NA	NA	False	NA	NA	NA	4311642	4310383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_4310400_4311600
70061	chr11	-	740	1	ISM	ENSMUSG00000038517.16	ENSMUST00000066078.12	3338	9	12796	6	12796	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGTGCGCTCAGGCT	NA	False	NA	NA	False	NA	NA	NA	97027742	97027002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97027000_97027700
70062	chr7	-	593	7	NNC	ENSMUSG00000053565.11	novel	774	8	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1339.38975532392	198	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCTATTGTCTCTTGCCT	NA	False	NA	NA	False	NA	NA	NA	28681231	28670799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28670864_28671956_28672024_28674060_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
70064	chr4	+	1021	5	NNC	ENSMUSG00000054405.15	novel	1837	8	NA	NA	-10	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1451.91500698216	1	69	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAAGCCTTTGATGGTCT	2411	False	NA	NA	False	NA	NA	NA	132262940	132281042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132263012_132273947_132274020_132277687_132277780_132278845_132278922_132280332
70065	chr13	-	1184	1	ISM	ENSMUSG00000021510.12	ENSMUST00000012314.10	9455	4	23359	486	3952	-486	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAATTCAAGACCACCC	NA	False	NA	NA	False	NA	NA	NA	67762551	67761367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_67761400_67762600
70067	chr1	+	1927	1	Intergenic	novelGene_389	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCATAACTGTTTAAAAACA	1025	False	NA	NA	False	NA	NA	NA	74856234	74858161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_74856200_74858200
70069	chr19	+	619	1	FSM	ENSMUSG00000117804.2	ENSMUST00000236432.2	580	1	-35	-4	-35	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAATGACTGAATAAAG	NA	False	NA	NA	False	NA	NA	NA	9193709	9194328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9193700_9194300
70071	chr14	-	944	2	Intergenic	novelGene_617	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	163	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76752931	76751854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_76752575_76752707
70073	chr19	+	1161	8	ISM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	-7	13103	-7	-1650	5prime_fragment	FALSE	canonical	3	57	junction_3	14.2427926635594	76	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCTAAAAATTGCTATTC	NA	False	NA	NA	False	NA	NA	NA	17114122	17185845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594
70076	chr4	+	577	1	Intergenic	novelGene_2169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGCTAAAAGCAAAAATGAG	6756	False	NA	NA	False	NA	NA	NA	150155666	150156243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_150155700_150156200
70077	chr19	-	862	6	NIC	ENSMUSG00000024667.13	novel	876	6	NA	NA	-1	-9	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.4717403753266	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTTCTGATACAGGGC	NA	False	NA	NA	False	NA	NA	NA	10533101	10527840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
70078	chr1	-	932	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1050.39215891019	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2369	False	NA	NA	False	NA	NA	NA	93729597	93720297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720652_93722443_93722646_93726101_93726193_93728525_93728633_93729419
70079	chr5	-	1138	5	NNC	ENSMUSG00000037822.13	novel	1177	6	NA	NA	106	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	171.963658951535	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTGGTTTAGAATCCAT	NA	False	NA	NA	False	NA	NA	NA	65650637	65607146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650434
70082	chr7	+	1091	2	ISM	ENSMUSG00000042759.13	ENSMUST00000138558.3	614	3	827	-646	233	-21	3prime_fragment	FALSE	canonical	3	9	junction_1	0	32	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATATCCAAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	126187078	126188263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126187335_126187428
70083	chrX	+	515	3	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	19020	475	1323	-475	3prime_fragment	FALSE	canonical	3	3969	junction_1	3.5	8	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	416	False	NA	NA	False	NA	NA	NA	20548156	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20548244_20548347_20548449_20548616
70084	chr3	+	1819	9	ISM	ENSMUSG00000028068.15	ENSMUST00000071812.11	5756	38	16441	15682	-6730	-3024	internal_fragment	FALSE	canonical	3	201	junction_2	7.62807315119618	3	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAAGCTGATTCCCATTG	NA	False	NA	NA	False	NA	NA	NA	88005718	88012673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88005747_88006163_88006328_88007932_88008024_88008734_88008903_88008984_88009125_88009203_88009375_88011366_88011451_88011607_88011680_88011772
70086	chr16	-	604	1	Intergenic	novelGene_3578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAATAAAGGAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	8372438	8371834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_8371800_8372400
70087	chr12	-	1994	1	NIC	ENSMUSG00000002997.16	novel	1657	12	NA	NA	100119	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	11	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTCCAAGCATGGTTTTC	7182	False	NA	NA	False	NA	NA	NA	32010469	32008475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_32008500_32010500
70088	chr11	+	405	1	Genic_Genomic	ENSMUSG00000017837.13	novel	NA	NA	NA	NA	-48	-5278	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTTACCGCCGGGACCA	NA	False	NA	NA	False	NA	NA	NA	100510021	100510426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_100510000_100510400
70089	chr18	-	889	5	ISM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	182	14336	16	-14331	5prime_fragment	FALSE	canonical	3	102	junction_4	76.2508196677255	18	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGCAAGTACTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	70663323	70656090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
70090	chr7	-	585	4	NNC	ENSMUSG00000030869.12	novel	1416	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2458.57483559525	4	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGTATTTTTCTCAATTA	6393	False	NA	NA	False	NA	NA	NA	121701074	121690057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_121690187_121690808_121690945_121695831_121695955_121700877
70092	chr14	+	806	5	NNC	ENSMUSG00000022210.8	novel	828	5	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	27.9329554469268	29	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTCTTTCCCTAGTCTC	NA	False	NA	NA	False	NA	NA	NA	55716345	55725024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724714
70095	chr6	-	666	4	NNC	ENSMUSG00000042541.11	novel	1472	3	NA	NA	-1	-999	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	1595.95885494165	122	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATCTTTTTGGTTCAGA	-26	True	NA	NA	False	NA	NA	NA	6578659	6558292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6558492_6560407_6560502_6565265_6565458_6578478
70096	chr4	-	665	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	-6	0	-6	0	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	10996	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTAGCTACTTTTTTCT	-16	True	NA	NA	False	NA	NA	NA	40279427	40270590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
70097	chr4	-	1144	2	Antisense	novelGene_ENSMUSG00000028522.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGGCGGAAACTACGCATG	NA	False	NA	NA	False	NA	NA	NA	102973813	102971933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_102972021_102972756
70098	chr2	-	742	4	Intergenic	novelGene_2584	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	46	junction_3	6.37704215656966	694	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGAATCTTTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	26530256	26527187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_26527646_26528052_26528108_26529441_26529484_26530069
70099	chr11	-	974	2	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-61	978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97078768	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053067_97078503
70100	chr2	-	619	3	NIC	ENSMUSG00000056436.5	novel	655	4	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	3	45	junction_2	94.5	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCACTCGTGCGTTATGTT	NA	False	NA	NA	False	NA	NA	NA	76190792	76184290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_76184581_76186423_76186617_76190656
70101	chr7	-	1137	8	Fusion	ENSMUSG00000053338.10_ENSMUSG00000118635.2	novel	1535	6	NA	NA	-18265	1	multi-exon	FALSE	canonical	0	0	junction_7	19.5082400172704	73	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTTTTTACGTGTTT	NA	False	NA	NA	False	NA	NA	NA	3582146	3537585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_3537738_3544441_3544508_3545190_3545488_3545940_3546232_3546711_3546748_3562682_3562745_3563643_3563796_3582065
70102	chr6	-	481	5	FSM	ENSMUSG00000023089.13	ENSMUST00000141274.2	453	5	-23	-5	21	4	multi-exon	FALSE	canonical	3	33	junction_4	1535.46725380257	15567	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCCATGTTATTGACTT	17	True	NA	NA	False	NA	NA	NA	24527548	24518660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527458
70103	chr13	-	508	3	NNC	ENSMUSG00000061474.12	novel	701	4	NA	NA	-417	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	640.5	11	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTCCAGGTGGTCACT	NA	False	NA	NA	False	NA	NA	NA	100881584	100872637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100872782_100875521_100875658_100881356
70104	chr18	+	811	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234961.2	792	6	0	-19	0	19	multi-exon	FALSE	canonical	3	119	junction_5	518.443593846042	137	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTAAAGGGACTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	47091927	47168893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47168619
70105	chr3	+	3252	10	Antisense	novelGene_ENSMUSG00000040998.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	51	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTGGAAAGAGGACAGTG	NA	False	NA	NA	False	NA	NA	NA	132588450	132623313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_132590273_132591514_132591772_132596522_132596627_132597164_132597250_132610418_132610815_132612109_132612231_132612455_132612591_132614103_132614225_132615657_132615777_132623221
70106	chr17	-	1110	7	FSM	ENSMUSG00000061207.12	ENSMUST00000077477.12	1120	7	10	0	-8	0	multi-exon	FALSE	canonical	3	81	junction_1	4.59770474137791	478	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5583	False	NA	NA	False	NA	NA	NA	35055911	35042968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
70107	chr12	-	581	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-4	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	6857.82345006214	3	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGTTGTAGTAACTTG	NA	False	NA	NA	False	NA	NA	NA	28685881	28681083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28683844_28684294_28684352_28685414_28685487_28685578_28685663_28685850
70109	chr4	-	1652	8	ISM	ENSMUSG00000028444.18	ENSMUST00000102961.10	1995	10	20386	73	-11022	-73	3prime_fragment	FALSE	canonical	1	1	junction_6	2.16653584115759	12	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTTTTATAGATGTATA	6028	False	NA	NA	False	NA	NA	NA	41675056	41657570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41658153_41658240_41658410_41658780_41658962_41661972_41662137_41663201_41663369_41663539_41663658_41670842_41671077_41675019
70110	chr11	+	1544	3	NNC	ENSMUSG00000049721.15	novel	1749	3	NA	NA	2579	-19	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	4	22	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGGGAGACGCAGAAGTA	NA	False	NA	NA	False	NA	NA	NA	3942511	3949289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3942549_3946908_3947052_3947925
70113	chr14	+	639	1	NIC	ENSMUSG00000114693.2	novel	589	3	NA	NA	2451	-8178	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGGCTAAACGCCAAAG	NA	False	NA	NA	False	NA	NA	NA	65413968	65414607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_65414000_65414600
70114	chr11	+	750	7	NIC	ENSMUSG00000020903.14	novel	4394	8	NA	NA	-5	109	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	113.719928870107	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGGTGTACCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	67857300	68094705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67902140_67902266_68000102_68000205_68094531
70115	chr2	+	571	5	NNC	ENSMUSG00000062647.17	novel	1043	7	NA	NA	9	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2142.82528160837	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATCTTGACTGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	26801026	26803321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26801139_26801433_26801584_26802030_26802150_26803024_26803070_26803176
70119	chr10	+	1934	2	Intergenic	novelGene_3540	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAACGGGACAGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	120200637	120202691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120202174_120202293
70121	chr17	-	780	2	Genic_Genomic	ENSMUSG00000068141.6	novel	720	1	NA	NA	-36	138	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	3095044	3094150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_3094748_3094861
70122	chr17	-	1351	10	Fusion	ENSMUSG00000116560.2_ENSMUSG00000116868.2	novel	985	8	NA	NA	-11885	-11882	multi-exon	FALSE	non_canonical	0	0	junction_5	11.515957795625	2	56	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGGCAGTTTAAGTTAG	NA	False	NA	NA	False	NA	NA	NA	6861987	6791071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_6791227_6792929_6793075_6795963_6796109_6803306_6803476_6809624_6809752_6817281_6817354_6819117_6819159_6831826_6831892_6841677_6841897_6861774
70123	chr11	-	2748	26	ISM	ENSMUSG00000034664.14	ENSMUST00000103086.4	3437	30	2713	14	29	-7	3prime_fragment	FALSE	canonical	0	0	junction_4	1.63266653055668	13	68	10	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATATCCGCCATGCTGCCT	7252	False	NA	NA	False	NA	NA	NA	102357996	102344136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102344344_102346389_102346507_102346724_102346827_102347055_102347173_102347790_102347911_102348010_102348155_102348285_102348386_102348597_102348679_102348938_102349019_102349167_102349261_102350698_102350847_102350963_102351032_102351341_102351468_102351574_102351727_102351815_102351872_102351954_102352060_102352143_102352190_102352462_102352646_102355765_102355978_102356130_102356184_102356322_102356377_102356536_102356581_102356715_102356764_102357082_102357212_102357302_102357349_102357879
70124	chr9	-	840	2	FSM	ENSMUSG00000038086.5	ENSMUST00000042790.5	773	2	-69	2	-8	-2	multi-exon	FALSE	canonical	3	19	junction_1	0	44	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTGTTTGTGCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	50663662	50662379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50663034_50663476
70125	chr13	-	1623	3	NNC	ENSMUSG00000052727.7	novel	2669	3	NA	NA	-85	-753	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	24	17	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTTCTCATTGCCAAGA	4605	False	NA	NA	False	NA	NA	NA	99581060	99576894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_99578038_99578141_99578283_99580721
70126	chr13	-	1355	7	FSM	ENSMUSG00000069805.11	ENSMUST00000092888.11	1479	7	121	3	-34	-3	multi-exon	FALSE	canonical	0	0	junction_6	4.93288286231625	35	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTTCTTTAGTGCGT	NA	False	NA	NA	False	NA	NA	NA	63035975	63012569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_63012982_63015152_63015273_63016795_63016934_63018979_63019121_63020503_63020597_63022962_63023126_63035687
70127	chrX	-	340	3	Intergenic	novelGene_4090	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACGCATCAGGGAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	150844961	150819095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150819245_150819336_150819430_150844863
70128	chr11	-	806	1	Intergenic	novelGene_2476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGACCTTAGCACAACTCA	NA	False	NA	NA	False	NA	NA	NA	98090685	98089879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_98089900_98090700
70130	chr2	+	794	9	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	175	134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	488.382006604461	1	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGTATATAGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	127437767	127445909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548_127445595_127445642
70131	chr17	-	2049	9	NIC	ENSMUSG00000024070.16	novel	3201	7	NA	NA	-19	-151	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	42.4941172399192	1	103	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGATCATGACAAACACCA	NA	False	NA	NA	False	NA	NA	NA	79328225	79279134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
70132	chr11	-	634	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	378	0	-98	0	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	4	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	NA	False	NA	NA	False	NA	NA	NA	93846707	93840639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
70133	chr7	-	1734	1	ISM	ENSMUSG00000030814.18	ENSMUST00000106282.8	6235	5	43713	1883	42232	-1883	mono-exon	FALSE	NA	NA	NA	NA	NA	5	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAACGTGTGTATCCACTG	9841	False	NA	NA	False	NA	NA	NA	127264244	127262510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_127262500_127264200
70135	chr5	+	1434	3	FSM	ENSMUSG00000039917.11	ENSMUST00000129134.2	867	3	-17	-550	2	-523	multi-exon	FALSE	canonical	3	43	junction_1	5.5	31	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTGGCAGTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	135661559	135665949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135661773_135663957_135664078_135664848
70136	chr10	+	728	1	Intergenic	novelGene_3441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAACGCCATTTATCTTC	NA	False	NA	NA	False	NA	NA	NA	59426164	59426892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_59426200_59426900
70138	chr4	+	472	1	NIC	ENSMUSG00000006442.11	novel	1338	7	NA	NA	235	-19	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGTCATGACCTCTGAC	NA	False	NA	NA	False	NA	NA	NA	148678585	148679057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_148678600_148679100
70139	chr7	-	170	2	ISM	ENSMUSG00000036751.8	ENSMUST00000207851.2	369	3	4	1179	4	-1179	5prime_fragment	FALSE	canonical	3	5660	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGTAAGCAGAGTACCAT	NA	False	NA	NA	False	NA	NA	NA	30325535	30323928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30324039_30325475
70140	chr7	-	1201	8	NNC	ENSMUSG00000030697.8	novel	1359	9	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1182.00129493351	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5405	False	NA	NA	False	NA	NA	NA	126391333	126385037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126385464_126385543_126385725_126386387_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388246_126391247
70142	chr1	+	1549	4	ISM	ENSMUSG00000040782.13	ENSMUST00000076894.11	5116	20	93817	2536	5149	4	3prime_fragment	FALSE	canonical	3	385	junction_2	6.34209919681348	4	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACAAAAAGTTTATTGAG	NA	False	NA	NA	False	NA	NA	NA	159153712	159172674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_159154772_159156171_159156333_159170376_159170422_159172390
70143	chr16	-	1673	9	NNC	ENSMUSG00000022938.9	novel	939	9	NA	NA	92	208	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	19.4550764583437	47	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACTTGTTCCTGCCAAA	NA	False	NA	NA	False	NA	NA	NA	97313638	97271956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97300774_97300922_97302059_97302204_97313178
70145	chr5	+	583	5	NNC	ENSMUSG00000029267.18	novel	1932	14	NA	NA	2720	-680	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	787.20613564682	1	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTGGTTTTTAGTTCTT	NA	False	NA	NA	False	NA	NA	NA	108228750	108241355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108228836_108235161_108235263_108235806_108235956_108239926_108240023_108241203
70147	chr12	-	476	1	Intergenic	novelGene_4417	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	79856605	79856129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_79856100_79856600
70149	chr10	-	364	4	NNC	ENSMUSG00000025362.7	novel	681	4	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6503.17660839685	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGCATCGGAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	128462370	128460406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128460506_128461075_128461207_128462001_128462110_128462344
70151	chr17	-	1553	7	NNC	ENSMUSG00000037577.14	novel	1591	7	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5.5	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACCCCCGGTCTGATGTT	1075	False	NA	NA	False	NA	NA	NA	32408442	32403636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407713_32407846_32408008
70152	chr1	+	1363	7	NNC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	-46	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	97.237538476089	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTCTCTAATTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	58484740	58500672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494854_58496929_58497023_58500299
70153	chr12	-	2049	10	ISM	ENSMUSG00000042724.9	ENSMUST00000035987.9	4564	11	8458	1453	8157	-424	3prime_fragment	FALSE	canonical	3	48	junction_4	4.20170453359756	14	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTGGTCTTTCCCCCAA	NA	False	NA	NA	False	NA	NA	NA	81819491	81769236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_81769298_81770837_81771651_81772495_81772609_81776456_81776611_81777310_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453
70154	chr9	-	1018	5	NNC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1896	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	50.2910280268757	195	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	20789127	20785103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789011
70156	chr2	-	786	2	Intergenic	novelGene_2815	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	40	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGGTAGCGGTATTAAAGT	6289	False	NA	NA	False	NA	NA	NA	172364611	172360255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_172360918_172364487
70157	chr9	+	567	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161882.8	489	5	-70	-8	-23	0	multi-exon	FALSE	canonical	2	15	junction_4	473.611127403063	95	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGCTGTCATACTTGT	NA	False	NA	NA	False	NA	NA	NA	20556093	20558073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556990_20557825
70158	chr1	+	1301	8	ISM	ENSMUSG00000026450.15	ENSMUST00000086475.3	1688	11	5376	17	5376	-17	3prime_fragment	FALSE	canonical	1	4	junction_2	1.51185789203691	17	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATATTTTTCACCCCTGAC	5345	False	NA	NA	False	NA	NA	NA	134071759	134079260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134071806_134072989_134073156_134073328_134073454_134074299_134074424_134076073_134076260_134077113_134077222_134078216_134078344_134078841
70159	chr1	+	1398	9	ISM	ENSMUSG00000026173.16	ENSMUST00000113747.8	2720	17	14815	45	-2709	-45	3prime_fragment	FALSE	canonical	0	0	junction_1	1.39194109070751	2	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGCTGCTCCTTAGCTG	8511	False	NA	NA	False	NA	NA	NA	74596876	74605091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_74597032_74599448_74599653_74601213_74601383_74601872_74601990_74602609_74602783_74603535_74603672_74604190_74604341_74604418_74604527_74604905
70160	chr4	+	1698	13	FSM	ENSMUSG00000073889.11	ENSMUST00000098132.11	2009	13	302	9	0	-9	multi-exon	FALSE	canonical	1	6	junction_1	3.12138680005467	15	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGGAGATTGTCGTCT	-8	True	NA	NA	False	NA	NA	NA	41760497	41769465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_41760552_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
70161	chr8	+	1322	1	ISM	ENSMUSG00000039620.18	ENSMUST00000147525.9	5820	6	54062	3613	6147	1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36978789	36980111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_36978800_36980100
70162	chr3	-	1564	9	NIC	ENSMUSG00000027793.7	novel	1560	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_8	1.65359456941537	30	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGGGGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	54962464	54952895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961940_54962369
70163	chr11	+	817	1	Antisense	novelGene_ENSMUSG00000018476.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	407	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69289347	69290164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69289300_69290200
70164	chr5	+	1368	3	Antisense	novelGene_ENSMUSG00000107047.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	6.5	28	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCTATGAATTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	150794599	150807147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_150794665_150798972_150799086_150805957
70165	chr4	-	454	1	Intergenic	novelGene_1854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAAAGAACAAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	53347834	53347380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_53347400_53347800
70166	chr6	-	1681	4	ISM	ENSMUSG00000030321.16	ENSMUST00000124531.4	2495	10	-17	8912	-17	-8912	5prime_fragment	FALSE	canonical	3	6	junction_1	2.05480466765633	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGAGGGCTGGGCATGT	NA	False	NA	NA	False	NA	NA	NA	115815390	115796768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_115797163_115799077_115799264_115800217_115800673_115814744
70167	chr12	-	935	4	FSM	ENSMUSG00000020635.9	ENSMUST00000020964.7	976	4	20	21	20	-21	multi-exon	FALSE	canonical	3	44	junction_1	6.34209919681348	84	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTGGCGTCTTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	4891571	4883194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_4883796_4884738_4884852_4888168_4888217_4891398
70168	chr2	+	1085	4	NNC	ENSMUSG00000085498.2	novel	1781	5	NA	NA	1412	-651	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.69967317119759	13	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATTTTCTAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	129140701	129149095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_129140758_129147073_129147248_129148079_129148230_129148390
70169	chr6	-	1907	3	ISM	ENSMUSG00000030126.18	ENSMUST00000172510.4	2612	4	13298	127	13242	-127	3prime_fragment	FALSE	canonical	3	18	junction_2	3	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTTAATCCTAACTTTTA	NA	False	NA	NA	False	NA	NA	NA	116020674	115998434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_115999363_116001762_116001899_116019831
70171	chr4	+	825	6	FSM	ENSMUSG00000028461.13	ENSMUST00000030181.12	817	6	-10	2	-10	-2	multi-exon	FALSE	canonical	3	301	junction_5	16.9162643630324	293	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTGGGTGTTCCTCTGTGC	-36	True	NA	NA	False	NA	NA	NA	43493351	43495919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508_43495622_43495696
70173	chr4	-	972	1	Intergenic	novelGene_1860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAAGCCTCACTTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	55537145	55536173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_55536200_55537100
70174	chr11	-	2581	1	ISM	ENSMUSG00000046442.5	ENSMUST00000055438.5	6344	7	127777	1760	127391	-1760	mono-exon	FALSE	NA	NA	NA	NA	NA	6	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAACATTCTATAATATTA	NA	False	NA	NA	False	NA	NA	NA	87122072	87119491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_87119500_87122100
70175	chr2	+	644	3	FSM	ENSMUSG00000074884.13	ENSMUST00000110615.8	876	3	-10	242	0	-6	multi-exon	FALSE	canonical	1	56	junction_2	2937.5	57	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAATTCCTTGAGCGCCT	NA	False	NA	NA	False	NA	NA	NA	121279848	121281529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121279923_121280455_121280565_121281068
70176	chr13	+	1256	11	Antisense	novelGene_ENSMUSG00000033114.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGACCAGCACGATGAGGAA	NA	False	NA	NA	False	NA	NA	NA	64244955	64277023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_64245499_64246128_64246212_64247083_64247161_64254826_64254924_64256140_64256242_64259329_64259401_64260744_64260818_64266231_64266298_64268408_64268496_64270132_64270167_64276999
70178	chr6	+	2633	2	Antisense	novelGene_ENSMUSG00000049939.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGGGGGAAGTAGTGGG	NA	False	NA	NA	False	NA	NA	NA	28829176	28831982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_28831714_28831886
70179	chr7	-	456	2	Genic_Genomic	ENSMUSG00000109509.2	novel	397	1	NA	NA	-81	35	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTAACTGGAATTCA	9554	False	NA	NA	False	NA	NA	NA	30184603	30184090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_30184376_30184432
70181	chr6	-	1392	2	NNC	ENSMUSG00000030022.15	novel	4519	5	NA	NA	7450	3775	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCACCTTCTTTTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	92824163	92818799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_92818963_92822934
70182	chr7	+	1450	10	ISM	ENSMUSG00000005553.15	ENSMUST00000005692.14	3485	22	5488	794	-135	-463	internal_fragment	FALSE	canonical	0	0	junction_1	1.59474445493415	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAACATCTTCAACTTC	1396	False	NA	NA	False	NA	NA	NA	30417121	30424153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_30417309_30418403_30418580_30419417_30419555_30419641_30419793_30419891_30420061_30420150_30420306_30421916_30422041_30422344_30422491_30423617_30423752_30424082
70184	chr2	+	1461	1	ISM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	15698	7	15698	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	11	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATTTTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	112301039	112302500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_112301000_112302500
70186	chr4	-	991	8	Antisense	novelGene_ENSMUSG00000029003.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCAGCCGGATCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	148230120	148225149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_148225290_148225369_148225489_148227440_148227513_148227996_148228100_148228720_148228810_148229103_148229183_148229556_148229651_148229825
70187	chr6	-	1449	3	NIC	ENSMUSG00000030316.14	novel	531	2	NA	NA	-1950	811	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	6.5	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTACAAATGTGTGCAAATG	NA	False	NA	NA	False	NA	NA	NA	115011176	115007427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_115008724_115009180_115009274_115011116
70188	chr4	+	1116	7	NNC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	356	-11	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	333.508329064741	28	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAACAAGGTCCTAGTGT	NA	False	NA	NA	False	NA	NA	NA	117410162	117531467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_117410241_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506670_117530937
70189	chr3	-	1361	2	NNC	ENSMUSG00000040943.13	novel	423	3	NA	NA	-25996	1112	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_1	0	1	73	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGAAGCAACCGAACTCTT	NA	False	NA	NA	False	NA	NA	NA	133212439	133193183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_133194479_133212373
70190	chr12	-	381	3	NNC	ENSMUSG00000049751.7	novel	526	2	NA	NA	-31	-35	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2666	4	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGACCTGCTAGAGAATA	NA	False	NA	NA	False	NA	NA	NA	69230818	69229549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_69229742_69229812_69229940_69230756
70191	chr1	-	934	1	Intergenic	novelGene_422	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTTTTTTAAGATTTA	NA	False	NA	NA	False	NA	NA	NA	118316617	118315683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118315700_118316600
70192	chr19	-	1058	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	-58	0	22	0	multi-exon	FALSE	canonical	3	112	junction_2	17.04582060213	588	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	6987	False	NA	NA	False	NA	NA	NA	6973463	6970385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
70196	chr11	+	1191	2	Antisense	novelGene_ENSMUSG00000089876.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCCTTTCTGGAAGCTGTC	2560	False	NA	NA	False	NA	NA	NA	69695215	69696495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69695755_69695843
70198	chr5	-	1068	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-2660	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	79.358931444419	94	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	7496	False	NA	NA	False	NA	NA	NA	115327027	115306747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115326852
70199	chr19	+	414	1	NIC	ENSMUSG00000038812.17	novel	957	5	NA	NA	447	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCGGTTTCTCTTTGCA	NA	False	NA	NA	False	NA	NA	NA	6887978	6888392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6888000_6888400
70200	chr11	-	1461	1	FSM	ENSMUSG00000046731.6	ENSMUST00000238978.2	2721	1	1257	3	1257	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGACGTGTAAAGGCCA	NA	False	NA	NA	False	NA	NA	NA	69770554	69769093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69769100_69770600
70202	chr11	-	475	1	ISM	ENSMUSG00000078812.11	ENSMUST00000164359.8	1281	7	3891	6	1110	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9896	False	NA	NA	False	NA	NA	NA	69808020	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69807500_69808000
70203	chr7	-	1148	8	NIC	ENSMUSG00000036845.13	novel	1312	9	NA	NA	35	-9	intron_retention	FALSE	canonical	3	52	junction_7	78.70819266021	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGGCAGTTGACAAATC	4927	False	NA	NA	False	NA	NA	NA	30259029	30254878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256720_30257050_30257102_30257307_30257510_30258866
70204	chr19	-	970	2	Antisense	novelGene_ENSMUSG00000024925.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGGGAGACCGAGCACACT	8679	False	NA	74	True	NA	NA	NA	5652964	5651882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_5652108_5652219
70205	chr11	-	2136	14	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	-6	1114	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	38.0597474860019	2	62	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACATGTTTTGATTCAAT	2368	False	NA	NA	False	NA	NA	NA	98041235	97980802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040941
70208	chr5	-	897	5	NNC	ENSMUSG00000029499.12	novel	1041	5	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	204.212511859582	6	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	110433899	110422160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_110422495_110425520_110425641_110429062_110429248_110431511_110431620_110433749
70209	chr11	-	2924	1	Intergenic	novelGene_2201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAACACCAGATAGACCAA	NA	False	NA	NA	False	NA	NA	NA	5288406	5285482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_5285500_5288400
70210	chr9	+	477	3	NNC	ENSMUSG00000032215.16	novel	1543	6	NA	NA	22	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	488.5	7	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGCCTACATATCTCTT	8657	False	NA	NA	False	NA	NA	NA	73020806	73030611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_73020866_73022169_73022213_73030236
70212	chr7	+	687	1	NIC	ENSMUSG00000091510.5	novel	685	2	NA	NA	0	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTGACAATAAATAATACT	59	False	NA	NA	False	NA	NA	NA	45016656	45017343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45016700_45017300
70213	chr19	-	2573	1	Antisense	novelGene_ENSMUSG00000098286.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAACAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	41578290	41575717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41575700_41578300
70215	chrX	+	1716	1	ISM	ENSMUSG00000073295.5	ENSMUST00000103007.4	3036	2	5574	368	5574	-368	mono-exon	FALSE	NA	NA	NA	NA	NA	26	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGTATTCCTTAGAAG	NA	False	NA	NA	False	NA	NA	NA	5965080	5966796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_5965100_5966800
70217	chr4	-	1850	6	ISM	ENSMUSG00000028541.15	ENSMUST00000106421.9	1801	8	1460	-155	639	-16	3prime_fragment	FALSE	canonical	3	58	junction_2	7.68374908491942	23	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTTAACGGAGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	117738849	117730343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_117731201_117734076_117734182_117734293_117734417_117734635_117734827_117738064_117738301_117738511
70218	chr14	-	996	3	ISM	ENSMUSG00000021917.17	ENSMUST00000228736.2	702	4	8	-1	-5	0	intron_retention	FALSE	canonical	3	1717	junction_2	38.5	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACATTTGTTTTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	30723312	30721782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_30722180_30722634_30722722_30722800
70219	chrX	+	995	3	ISM	ENSMUSG00000009995.18	ENSMUST00000124200.8	1742	9	5700	-3	-212	0	3prime_fragment	FALSE	canonical	3	81	junction_1	89.5	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTCTTCTGTGTAGGA	NA	False	NA	NA	False	NA	NA	NA	73332055	73333757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_73332120_73332710_73332789_73332904
70221	chr15	+	1064	2	Intergenic	novelGene_3306	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGAGACCCTCCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	74180742	74210046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_74181732_74209971
70222	chr7	+	2229	21	ISM	ENSMUSG00000038540.15	ENSMUST00000164944.2	3306	22	30	2996	30	1844	5prime_fragment	FALSE	canonical	2	3	junction_20	2.29074223779106	13	6	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATCAGCCAGCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	83234329	83269159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_83234389_83235493_83235641_83239847_83239924_83245268_83245351_83246654_83246762_83247407_83247507_83247607_83247751_83249155_83249304_83250093_83250138_83252535_83252684_83253938_83254049_83256941_83257021_83258283_83258533_83259051_83259181_83259919_83259988_83261641_83261771_83264120_83264232_83265065_83265192_83265940_83266020_83267336_83267380_83269106
70223	chr7	+	1358	3	ISM	ENSMUSG00000053091.17	ENSMUST00000128486.8	1419	5	35	676	13	-676	intron_retention	FALSE	canonical	3	70	junction_2	8	60	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTTGTGTGATAGTTT	NA	False	NA	NA	False	NA	NA	NA	66339731	66358974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_66339772_66345923_66346055_66357787
70224	chr7	-	899	11	NNC	ENSMUSG00000030760.15	novel	11340	11	NA	NA	30	-360	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_7	66.6438294217852	1	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATGTAGTTCTGCCAAG	NA	False	NA	NA	False	NA	NA	NA	97958683	97866009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908576_97908665_97910793_97910847_97915343_97915455_97958554
70226	chr8	+	1973	20	Genic_Genomic	ENSMUSG00000085437.9	novel	622	5	NA	NA	-47390	22641	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	92	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCGCTCCGCACTGTCAC	NA	False	NA	NA	False	NA	NA	NA	26525246	26609191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_26525264_26528047_26528153_26529698_26529780_26534267_26534303_26538282_26538366_26549265_26549413_26551414_26551477_26557883_26557966_26558586_26558683_26560097_26560304_26561085_26561208_26562273_26562451_26563629_26563712_26564895_26564959_26572541_26572605_26578083_26578221_26583684_26583738_26585788_26585859_26600763_26600850_26608985
70227	chr7	+	751	4	NIC	ENSMUSG00000074365.14	novel	934	5	NA	NA	22	11	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	451.06195681845	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAATTGGGTCTTATT	NA	False	NA	NA	False	NA	NA	NA	15630070	15637956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_15630183_15631328_15631478_15636774_15636933_15637624
70228	chr4	-	987	1	ISM	ENSMUSG00000028790.14	ENSMUST00000066257.6	3738	9	26452	1039	-2024	-1039	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAATGTGATGAATTGT	9456	False	NA	NA	False	NA	NA	NA	129609637	129608650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129608600_129609600
70229	chr17	+	1962	2	Antisense	novelGene_ENSMUSG00000116719.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	16	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCATTTGTTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	6408493	6417317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_6408775_6415636
70231	chr1	+	2119	1	ISM	ENSMUSG00000055013.17	ENSMUST00000027521.15	11921	18	438351	2342	103994	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	22	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATACAGTGCTTCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	89820878	89822997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_89820900_89823000
70232	chr5	+	2332	6	Fusion	ENSMUSG00000079424.9_ENSMUSG00000070677.9_ENSMUSG00000095996.5	novel	2485	4	NA	NA	68	-33	multi-exon	TRUE	non_canonical	0	0	junction_1	0.8	17	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAAGACTTGTATTTTA	NA	False	NA	NA	False	NA	NA	NA	95338800	95633390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_95339110_95339769_95340361_95341337_95342375_95491270_95491387_95577087_95577096_95633119
70234	chr13	-	794	4	NNC	ENSMUSG00000006717.8	novel	721	3	NA	NA	29	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	121.633328765872	24	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATTATCAAAACCAGAAG	4846	False	NA	NA	False	NA	NA	NA	25015471	25001952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_25002175_25004697_25004883_25006651_25006776_25015208
70236	chr18	+	755	5	NNC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	-19	185	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	1386.88400740653	1322	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGGGATCTGCTGTGC	NA	False	NA	NA	False	NA	NA	NA	80250058	80265738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_80250117_80250368_80250559_80261918_80262023_80263471_80263530_80265393
70237	chr6	+	495	1	ISM	ENSMUSG00000090698.3	ENSMUST00000167323.3	3567	2	4528	96	4528	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCGTCATTCTATAAGCAA	NA	False	NA	NA	False	NA	NA	NA	134963208	134963703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_134963200_134963700
70238	chr7	+	1773	11	NNC	ENSMUSG00000070777.6	novel	640	6	NA	NA	-1811	-2089	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.13578166916005	10	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCCCAAAGCAGCCATTG	44	False	NA	NA	False	NA	NA	NA	19697525	19722116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_19697733_19701666_19701754_19704089_19704369_19705428_19705711_19708096_19708376_19709956_19710236_19711713_19711832_19712046_19712136_19719934_19719997_19720591_19720634_19722067
70239	chr7	-	1164	6	FSM	ENSMUSG00000007837.12	ENSMUST00000209920.2	876	6	31	-319	2	0	multi-exon	FALSE	canonical	3	12	junction_4	10.7962956610126	88	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	NA	False	NA	NA	NA	44711098	44703007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011
70241	chr2	-	1578	3	FSM	ENSMUSG00000059361.7	ENSMUST00000079278.5	1455	3	-126	3	-126	-3	multi-exon	FALSE	canonical	1	2	junction_2	1	28	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCAGCGTGGCTTCCTTT	8563	False	NA	NA	False	NA	NA	NA	152218684	152210677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152211844_152216015_152216211_152218467
70242	chr8	-	788	1	Genic_Genomic	ENSMUSG00000019470.13	novel	NA	NA	NA	NA	12260	198	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGGAGACATGAGGCCTG	6628	False	NA	NA	False	NA	NA	NA	3659010	3658222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_3658200_3659000
70243	chr6	-	1423	7	NNC	ENSMUSG00000029695.14	novel	3701	24	NA	NA	42362	-327	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	2.92498812913071	26	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTTGAGTTTTTGGAA	NA	False	NA	NA	False	NA	NA	NA	23085217	23072498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_23073090_23074526_23074704_23075160_23075250_23075739_23075856_23077077_23077174_23078826_23078995_23085031
70244	chr6	-	864	8	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-2243	2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_7	202.303873276952	37	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCTTGTCACTCTGAC	NA	False	NA	NA	False	NA	NA	NA	115011469	114981346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011116_115011212_115011453
70245	chr16	-	2573	1	Intergenic	novelGene_3618	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTAAATACCAACCCCC	4813	False	NA	NA	False	NA	NA	NA	21979509	21976936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_21976900_21979500
70246	chr6	+	451	1	Intergenic	novelGene_4115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGTTGCTTCTGGTCAGTG	NA	False	NA	NA	False	NA	NA	NA	5363270	5363721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_5363300_5363700
70247	chr4	+	2188	7	FSM	ENSMUSG00000002384.3	ENSMUST00000002457.2	2940	7	-30	782	-30	-782	multi-exon	FALSE	canonical	2	3	junction_1	4.18993502999218	4	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCGTCATTAAAGAAAATGCC	86	False	NA	NA	False	NA	NA	NA	122998927	123019102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_122999469_123008360_123008551_123008938_123009088_123015678_123015874_123016308_123016389_123016739_123016851_123018180
70248	chr11	-	659	3	ISM	ENSMUSG00000005204.13	ENSMUST00000123084.8	1164	4	689	-1	156	0	3prime_fragment	FALSE	canonical	3	980	junction_2	7	19	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	69565113	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69564463_69564872_69564924_69565027
70249	chr14	+	1723	5	NIC	ENSMUSG00000022102.14	novel	404	3	NA	NA	-43	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	2.38484800354236	24	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTTCTGTGGCCTGTAAT	NA	False	NA	NA	False	NA	NA	NA	71010668	71015933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_71010805_71012905_71013188_71013423_71013512_71014255_71014438_71014898
70250	chr14	-	2070	1	NIC	ENSMUSG00000022013.5	novel	6193	6	NA	NA	93	-46417	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAATTTGAAGTGGTAGC	NA	False	NA	NA	False	NA	NA	NA	78112273	78110203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_78110200_78112300
70251	chr5	+	1216	3	ISM	ENSMUSG00000063646.19	ENSMUST00000043794.11	2383	13	62	33277	3	-7	5prime_fragment	FALSE	canonical	3	5	junction_1	57.5	19	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGGAAATAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	37208262	37249366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_37208320_37242579_37242843_37248470
70252	chrX	+	988	7	NNC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-7	2	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	147.422766973837	28	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTCTCCAACTATCTTT	1116	False	NA	NA	False	NA	NA	NA	20664045	20719130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834
70254	chr3	-	1074	5	FSM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	6	1	6	-1	multi-exon	FALSE	canonical	1	1	junction_4	5.2618912949623	60	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCTGCTGCCTTCCATCT	5707	False	NA	NA	False	NA	NA	NA	88455601	88449336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367_88452564_88455339
70256	chr15	+	1159	5	ISM	ENSMUSG00000033287.18	ENSMUST00000229290.2	539	6	414	-695	18	-19	3prime_fragment	FALSE	canonical	3	32	junction_4	41.1726547601682	24	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTTGGCCTGGCTGCCAC	NA	False	NA	NA	False	NA	NA	NA	78314303	78323484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78322686
70257	chr7	-	701	7	NNC	ENSMUSG00000063511.12	novel	1735	10	NA	NA	14	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	559.12222873596	19	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGATAGTGGGCATGTGA	9055	False	NA	NA	False	NA	NA	NA	45045152	45025890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45025969_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
70258	chr10	+	571	5	ISM	ENSMUSG00000054708.18	ENSMUST00000123993.8	3161	15	7083	258	-150	-198	3prime_fragment	FALSE	canonical	3	11	junction_4	1.08972473588517	1	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCAACGGCACCACATA	NA	False	NA	NA	False	NA	NA	NA	81476615	81478599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81476647_81476725_81476825_81477809_81477883_81478134_81478254_81478350
70259	chr3	+	1987	1	ISM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	10736	29	9716	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	16	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATAAGATTTAAA	NA	False	NA	NA	False	NA	NA	NA	102913759	102915746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_102913800_102915700
70260	chr14	-	843	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	117	2	3	-1	multi-exon	FALSE	canonical	3	915	junction_9	61.4455856835949	3842	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTACCTGTGTTGTTCATT	NA	False	NA	NA	False	NA	NA	NA	55828427	55824899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
70261	chr2	+	1195	10	ISM	ENSMUSG00000038180.12	ENSMUST00000038860.12	1473	12	1046	22	-445	-22	3prime_fragment	FALSE	canonical	3	13	junction_1	3.23178657161089	26	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCGATGGTTGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	155908209	155911399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
70262	chr10	+	1007	1	Antisense	novelGene_ENSMUSG00000019775.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGTAAACTCTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	5781267	5782274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5781300_5782300
70263	chr16	+	1085	1	Antisense	novelGene_ENSMUSG00000022604.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGTATTTCTTTATGAAT	NA	False	NA	NA	False	NA	NA	NA	55720249	55721334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_55720200_55721300
70264	chr2	-	929	8	NNC	ENSMUSG00000027108.16	novel	905	8	NA	NA	-28	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	176.051824466431	13	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCCTGGTTGCGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	73044705	72967878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72968000_72972241_72972340_72972651_72972733_72987077_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
70265	chr4	+	1407	1	Intergenic	novelGene_1802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGTTAAGCTCAAGCCG	NA	False	NA	NA	False	NA	NA	NA	11602288	11603695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_11602300_11603700
70266	chr9	+	463	4	NNC	ENSMUSG00000000088.8	novel	645	5	NA	NA	2	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	4358.36378574447	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTGTGATGTTGTC	374	False	NA	NA	False	NA	NA	NA	57428558	57439710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57428699_57436238_57436356_57437523_57437617_57439597
70267	chr2	-	796	9	NNC	ENSMUSG00000035392.18	novel	1794	19	NA	NA	117316	15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	33.4140688932072	5	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTACCGGAATGCACTGAA	NA	False	NA	NA	False	NA	NA	NA	37938777	37826660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_37826757_37851652_37851755_37862743_37862908_37873071_37873118_37893385_37893487_37911367_37911479_37929163_37929218_37933350_37933432_37938736
70269	chr17	-	958	7	Antisense	novelGene_ENSMUSG00000071037.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGAAACGCAAGAGGAGAT	NA	False	NA	NA	False	NA	NA	NA	85766004	85699000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_85699057_85700880_85700940_85702028_85702094_85709853_85709920_85746953_85747019_85759623_85759754_85765487
70270	chrX	+	1440	13	Antisense	novelGene_ENSMUSG00000057000.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACGACAGACAGCAGGCT	NA	False	NA	NA	False	NA	NA	NA	134976273	134985937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_134976351_134976579_134976638_134976755_134976877_134977017_134977066_134977483_134977522_134978944_134979057_134979532_134979619_134979739_134979846_134980109_134980215_134980308_134980396_134981372_134981527_134981713_134982048_134985823
70272	chrM	+	474	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	486	-3	486	3	mono-exon	FALSE	NA	NA	NA	NA	NA	14	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	60	False	NA	18	True	NA	NA	NA	3236	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3200_3700
70273	chr14	-	1239	1	Intergenic	novelGene_639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGTCTGACGTGAGGCC	NA	False	NA	NA	False	NA	NA	NA	106713437	106712198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_106712200_106713400
70274	chr8	+	1224	3	FSM	ENSMUSG00000037101.17	ENSMUST00000124713.2	673	3	0	-551	0	-1	multi-exon	FALSE	canonical	2	2	junction_2	1	48	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGTTATTTTCATTTC	NA	False	NA	NA	False	NA	NA	NA	79117610	79120954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_79118107_79119699_79119767_79120293
70277	chr17	-	954	1	Antisense	novelGene_ENSMUSG00000023067.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCACCCCACAGCTGGTA	NA	False	NA	NA	False	NA	NA	NA	29310960	29310006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29310000_29311000
70278	chr4	+	331	2	FSM	ENSMUSG00000028407.5	ENSMUST00000129758.3	1044	2	-3	716	-3	-2	multi-exon	FALSE	canonical	3	97	junction_1	0	583	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGTGTGGCCTTTTGTG	-4	True	NA	NA	False	NA	NA	NA	40269575	40270224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40269720_40270037
70279	chr7	+	1565	4	NNC	ENSMUSG00000060260.14	novel	3057	3	NA	NA	48	-580	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	26.0810701893581	2	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGCCTCCAGAGGAGCAG	NA	False	NA	NA	False	NA	NA	NA	138828450	138846497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_138828560_138834685_138834789_138834833_138836077_138846387
70282	chr17	-	1354	4	FSM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	78	15	78	-15	multi-exon	FALSE	canonical	3	75	junction_2	9.89949493661167	63	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCCACACCTCACTCCA	NA	False	NA	NA	False	NA	NA	NA	35454690	35439165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35439953_35440112_35440335_35453927_35454208_35454625
70283	chr14	-	2064	1	Intergenic	novelGene_545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	104	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCTGCATTTCCACTCC	NA	False	NA	NA	False	NA	NA	NA	40622979	40620915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_40620900_40623000
70284	chr3	-	1020	3	FSM	ENSMUSG00000027770.6	ENSMUST00000160858.2	845	3	382	-557	382	557	multi-exon	FALSE	canonical	3	476	junction_1	97	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCAGCTAACTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	62379626	62377508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_62378169_62378742_62378896_62379419
70285	chr10	+	453	2	FSM	ENSMUSG00000085327.2	ENSMUST00000156260.2	401	2	-49	-3	-49	3	multi-exon	FALSE	canonical	3	16	junction_1	0	131	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACACAGCAGACATGCGG	NA	False	NA	NA	False	NA	NA	NA	81245359	81247416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81245600_81247203
70286	chr4	-	1843	12	ISM	ENSMUSG00000028680.15	ENSMUST00000076859.12	2378	15	927	0	763	0	3prime_fragment	TRUE	canonical	3	135	junction_10	17.3852792294026	53	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGGCCTTATCATTCC	4146	False	NA	NA	False	NA	NA	NA	116990233	116985851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116986376_116986482_116986597_116987156_116987287_116987439_116987603_116987704_116987789_116987920_116988015_116988258_116988351_116988569_116988697_116988806_116989006_116989097_116989194_116989923_116990012_116990101
70291	chr16	+	1676	4	ISM	ENSMUSG00000022708.17	ENSMUST00000148775.8	590	5	98742	-1145	-40668	910	3prime_fragment	FALSE	canonical	1	1	junction_2	4.71404520791032	2	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCGGGCAGTGGCCCCAA	NA	False	NA	NA	False	NA	NA	NA	43283308	43431035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_43283350_43390043_43390145_43397923_43398112_43429689
70292	chr9	-	1293	2	Antisense	novelGene_ENSMUSG00000098894.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGCAGCAAAAGTGGCATG	NA	False	NA	NA	False	NA	NA	NA	76228113	76219753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_76219851_76226917
70294	chr16	+	928	2	NNC	ENSMUSG00000022528.9	novel	1468	4	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	278	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTTTTATGTCTTAGAAC	NA	False	NA	NA	False	NA	NA	NA	29884157	29886605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29884517_29886036
70295	chr8	-	964	5	FSM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	16	0	16	0	multi-exon	FALSE	canonical	3	649	junction_3	27.2304976083802	338	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	NA	False	NA	NA	NA	71213576	71211294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71211671_71211754_71211884_71212036_71212114_71213013_71213185_71213365
70296	chr19	+	217	2	Intergenic	novelGene_1239	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAGCACCTGAGAGAAACA	NA	False	NA	NA	False	NA	NA	NA	25456820	25466569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_25456909_25466440
70299	chr2	+	1158	12	NNC	ENSMUSG00000027384.7	novel	1166	11	NA	NA	26	1	at_least_one_novel_splicesite	TRUE	canonical	1	5	junction_8	105.946189366689	51	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTATGTTTCCCAGAAT	NA	False	NA	NA	False	NA	NA	NA	140012594	140045553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030656_140030833_140035502_140035564_140041284_140041381_140044785_140044870_140045207_140045291_140045451
70300	chr3	+	919	5	ISM	ENSMUSG00000027901.13	ENSMUST00000183271.2	2050	12	8910	4	1785	-4	3prime_fragment	FALSE	canonical	1	3	junction_1	1.87082869338697	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGTTATTTGTCAATCTA	NA	False	NA	NA	False	NA	NA	NA	106402275	106408354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_106402325_106406133_106406176_106406536_106406622_106407070_106407311_106407851
70302	chrX	+	2596	2	FSM	ENSMUSG00000048047.4	ENSMUST00000115142.3	2567	2	5	-34	5	34	multi-exon	FALSE	canonical	1	2	junction_1	0	7	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGTCCAAATGGAGATCA	NA	False	NA	NA	False	NA	NA	NA	37278693	37283595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_37278786_37281091
70303	chr16	+	826	3	FSM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	20	0	20	0	multi-exon	FALSE	canonical	3	238	junction_1	10.5	2673	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACGGCTGTATTGCTTCT	6305	False	NA	NA	False	NA	NA	NA	91855177	91909115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91855369_91896481_91896622_91908620
70305	chr2	-	1206	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	-61	5	-61	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	88	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGTCTTTTGTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	25390686	25388667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
70306	chr7	+	855	5	Antisense	novelGene_ENSMUSG00000025466.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	267	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCTGTGTTTTCCCGCCT	NA	False	NA	NA	False	NA	NA	NA	139679382	139681889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_139679618_139679790_139679865_139681002_139681101_139681243_139681315_139681512
70308	chr7	+	683	1	ISM	ENSMUSG00000052512.18	ENSMUST00000064395.13	11317	38	362265	951	21037	-951	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTAGCAACACCCTCTC	NA	False	NA	NA	False	NA	NA	NA	49258201	49258884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_49258200_49258900
70309	chr5	-	547	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	38	-30	38	30	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGTCAAAACAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	22818142	22817595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_22817600_22818100
70310	chr2	+	459	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	8	4	8	-4	multi-exon	FALSE	canonical	3	228	junction_1	0	1959	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAACCAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	144435981	144437282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_144436126_144436967
70311	chr19	+	1385	3	NNC	ENSMUSG00000024769.8	novel	5995	37	NA	NA	702	-6	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	7	50	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGCTGGCTTCCCTGCC	7916	False	NA	NA	False	NA	NA	NA	6372539	6375676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6372709_6372825_6372912_6374546
70312	chr2	-	620	4	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8800	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	241.59608164593	1331	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGTTCATTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	10370052	10344090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10369968
70315	chr6	-	1855	9	Antisense	novelGene_ENSMUSG00000041477.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCCATCTTCCCACCCAC	NA	False	NA	NA	False	NA	NA	NA	119197167	119152261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_119152403_119157024_119157065_119160608_119160739_119175888_119175956_119177782_119177911_119183428_119183558_119191728_119192566_119194761_119194936_119196958
70317	chr7	+	341	4	ISM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	91	909	-25	333	5prime_fragment	FALSE	canonical	3	3938	junction_1	1253.9237084714	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTACCGCCCTGATCTGC	2784	False	NA	NA	False	NA	NA	NA	4795963	4797156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062
70318	chr11	+	1262	3	ISM	ENSMUSG00000020811.17	ENSMUST00000108510.2	2956	9	32969	7	15669	-7	3prime_fragment	FALSE	canonical	3	9	junction_1	1.5	8	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAACACTGTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	71675170	71680466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_71675260_71678543_71678745_71679494
70319	chr16	-	354	2	Genic_Genomic	ENSMUSG00000099764.2	novel	496	1	NA	NA	-43	52	multi-exon	FALSE	non_canonical	0	0	junction_1	0	575	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	20641433	20640842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_20640977_20641213
70320	chr12	-	2853	1	Intergenic	novelGene_4470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGTAATCTGTCTGGCCA	8438	False	NA	NA	False	NA	NA	NA	109590100	109587247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_109587200_109590100
70321	chr4	-	810	7	FSM	ENSMUSG00000029059.10	ENSMUST00000030935.10	883	7	45	28	-27	-28	multi-exon	FALSE	canonical	3	64	junction_6	8.17856276425687	350	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCGTCTCACTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	154983522	154980883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_154981055_154981496_154981616_154981805_154981882_154981962_154982027_154982584_154982637_154982932_154983138_154983399
70322	chr1	+	1744	2	Antisense	novelGene_ENSMUSG00000025956.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCTCTGGAAGAGCGGC	NA	False	NA	NA	False	NA	NA	NA	64645646	64653304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_64647295_64653208
70324	chr7	+	529	2	FSM	ENSMUSG00000030672.13	ENSMUST00000139613.2	285	2	-258	14	-258	-14	multi-exon	FALSE	canonical	3	1768	junction_1	0	131	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTGTTTCTTATTGGT	133	False	NA	NA	False	NA	NA	NA	126812809	126813445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126813156_126813262
70325	chr7	+	1791	1	Antisense	novelGene_ENSMUSG00000048920.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGCAGCCAAACCACTCTA	NA	False	NA	NA	False	NA	NA	NA	16543199	16544990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_16543200_16545000
70326	chr18	+	1668	15	NNC	ENSMUSG00000024302.17	novel	6295	21	NA	NA	39567	-6012	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3.26077491728952	2	55	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTAAGTACCCTGTTGTT	926	False	NA	NA	False	NA	NA	NA	23716185	23786431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_23716227_23723245_23723401_23726028_23726135_23728515_23728683_23730490_23730614_23735647_23735732_23754443_23754532_23755023_23755122_23758138_23758253_23764388_23764486_23776203_23776364_23779253_23779344_23779944_23780111_23784572_23784706_23786385
70327	chr1	+	333	1	Intergenic	novelGene_340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAAGTCTTGTGTGTGAAG	NA	False	NA	NA	False	NA	NA	NA	13164373	13164706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_13164400_13164700
70328	chr17	-	468	4	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4796.06959452796	195	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCAGTTTTATACAGTC	NA	False	NA	NA	False	NA	NA	NA	45884192	45878716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878827_45882438_45882546_45882686_45882838_45884092
70329	chr8	+	815	6	NNC	ENSMUSG00000002395.15	novel	854	8	NA	NA	-1	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	342.602043192973	3	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCTGCACACCAACCCA	NA	False	NA	NA	False	NA	NA	NA	71819859	71822359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820739_71821740_71821948_71822170
70330	chr11	-	1349	8	FSM	ENSMUSG00000018381.16	ENSMUST00000059026.10	4006	8	266	2391	-45	258	multi-exon	FALSE	canonical	1	2	junction_7	1.51185789203691	23	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCACCTTGCCCAGAGGAC	NA	False	NA	NA	False	NA	NA	NA	95732969	95723290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95723703_95724034_95724161_95724465_95724627_95724828_95724925_95725131_95725218_95726603_95726781_95727895_95728064_95732846
70331	chr7	+	1251	6	NIC	ENSMUSG00000035228.16	novel	1534	5	NA	NA	13	-17	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	5.77581163127746	69	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATGAAAATTTTCAATAAA	264	False	NA	NA	False	NA	NA	NA	5059927	5063764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_5059967_5060497_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
70334	chr16	+	1514	7	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	190	4288	-14	35	5prime_fragment	FALSE	canonical	3	82	junction_1	11.6105794668292	111	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTACCTTGGCTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	13489911	13517188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736
70336	chrX	-	766	4	NNC	ENSMUSG00000090110.9	novel	507	4	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	27.1825107171668	71	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	NA	NA	NA	74460143	74448451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74448825_74453151_74453220_74459620_74459820_74460017
70337	chrX	-	825	4	NNC	ENSMUSG00000031429.15	novel	1430	5	NA	NA	2	-511	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	270.960431715694	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTGTGGCTGTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	139857436	139849688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_139850059_139852895_139853063_139853153_139853301_139857295
70338	chr18	+	1837	6	ISM	ENSMUSG00000040957.16	ENSMUST00000225430.2	2447	9	79060	6	79060	-2	3prime_fragment	FALSE	canonical	3	28	junction_2	3.72021504754765	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAATGTGTGTGTGAACA	NA	False	NA	NA	False	NA	NA	NA	12056416	12078681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_12056514_12057871_12058029_12059317_12059422_12072775_12072883_12074236_12074445_12077517
70340	chr8	-	957	3	Antisense	novelGene_ENSMUSG00000031565.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTGCTTCATATTTATT	NA	False	NA	NA	False	NA	NA	NA	26027437	26023446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_26024054_26024508_26024754_26027332
70342	chr2	+	1152	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	44	0	44	0	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	126	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	70491977	70519704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
70344	chr4	+	1543	9	NNC	ENSMUSG00000035601.10	novel	983	8	NA	NA	81	317	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	94.6400252271733	794	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACATAAAATTATTTTTG	73	False	NA	NA	False	NA	NA	NA	45297235	45315459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_45297456_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
70345	chr12	+	948	1	ISM	ENSMUSG00000021294.8	ENSMUST00000128402.3	6918	16	34587	5	1641	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	15	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTATATGGTTCTGACTTT	986	False	NA	NA	False	NA	NA	NA	112147228	112148176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_112147200_112148200
70346	chr15	+	724	4	ISM	ENSMUSG00000033020.8	ENSMUST00000229973.2	414	5	-27	-168	-12	-2	intron_retention	FALSE	canonical	3	2040	junction_3	39.0640499692492	130	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCACCCCCTCTCCCCGTT	NA	False	NA	NA	False	NA	NA	NA	79025538	79035962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535
70347	chr8	+	1777	1	ISM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	13851	902	6328	-902	mono-exon	FALSE	NA	NA	NA	NA	NA	1	100	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGGTAAAATTTACCAGT	NA	False	NA	NA	False	NA	NA	NA	27527677	27529454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_27527700_27529500
70349	chr17	+	865	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11918	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_1	2.5	1029	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	NA	False	NA	NA	NA	34112190	34125649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34112309_34124501_34124892_34125292
70350	chr4	-	818	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	61	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	6.82934843158555	349	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	129517679	129513066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
70351	chr13	+	1724	9	ISM	ENSMUSG00000043183.19	ENSMUST00000121401.8	4819	10	22200	860	-2958	-356	3prime_fragment	FALSE	canonical	3	26	junction_2	7.32184232280374	8	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGCCCAAGCCCCAA	NA	False	NA	NA	False	NA	NA	NA	54673791	54698243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_54674486_54676116_54676350_54676966_54677037_54684894_54685050_54687516_54687670_54689236_54689366_54694789_54694947_54695067_54695153_54698195
70352	chr9	-	506	3	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	18	-10	at_least_one_novel_splicesite	FALSE	canonical	3	664	junction_2	88746.5	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTAAAATGTGCGTCGT	NA	False	NA	NA	False	NA	NA	NA	78275441	78274343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78274577_78275002_78275178_78275343
70353	chr1	+	618	11	NNC	ENSMUSG00000053332.14	novel	502	12	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_7	1939.64689827814	101	8	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864882_160865074_160865118_160865564_160865608_160865794_160865843_160866026
70354	chr6	-	1476	4	NNC	ENSMUSG00000056771.8	novel	2346	2	NA	NA	17	-1214	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.69967317119759	23	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCAAGTAGTAACGATGA	NA	False	NA	NA	False	NA	NA	NA	128177569	128165994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128166683_128167505_128167762_128176569_128176675_128177142
70356	chr5	+	1606	1	Intergenic	novelGene_886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTTTGAAATTTTTAACA	NA	False	NA	NA	False	NA	NA	NA	144629219	144630825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_144629200_144630800
70358	chr1	+	1424	2	Antisense	novelGene_ENSMUSG00000026544.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTAGTCTCTTGGACCCT	NA	False	NA	NA	False	NA	NA	NA	172458349	172460562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_172459396_172460184
70360	chr9	-	1041	2	Intergenic	novelGene_1002	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_1	0	76	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATCTAGTGGGAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	30941560	30940299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_30940444_30940663
70362	chr3	-	704	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	35.14612354158	377	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGGAGTCTGTCCAT	7128	False	NA	NA	False	NA	NA	NA	88280050	88275923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279845
70363	chr17	-	957	2	Antisense	novelGene_ENSMUSG00000071073.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACCCAGCCCTACTCC	7277	False	NA	NA	False	NA	NA	NA	46564831	46563758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_46564613_46564728
70364	chr18	-	2196	7	ISM	ENSMUSG00000041258.19	ENSMUST00000182122.8	6059	31	74876	-622	-108	622	3prime_fragment	FALSE	canonical	2	9	junction_4	9.4413393588457	7	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACTGTAACAGAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	82635983	82614657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_82615880_82617071_82617249_82619384_82619515_82622313_82622512_82625872_82626005_82627412_82627601_82635834
70366	chr7	-	1283	3	NNC	ENSMUSG00000031024.14	novel	439	3	NA	NA	3257	779	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	111.5	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAACCCTGTTCCCAAACC	NA	False	NA	NA	False	NA	NA	NA	109212341	109155608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_109156669_109169213_109169319_109212223
70367	chr9	-	966	3	NIC	ENSMUSG00000048503.8	novel	3503	3	NA	NA	11	-6	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	11.5	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGAGTCTGCCTTCGTAT	NA	False	NA	NA	False	NA	NA	NA	43027854	43019950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_43020634_43024755_43024956_43027771
70368	chr5	-	1031	4	FSM	ENSMUSG00000029726.17	ENSMUST00000132726.2	524	4	13	-520	-11	-3	multi-exon	FALSE	canonical	3	16	junction_3	65.2703778311588	110	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTGTGTCCAGCACTTT	2687	False	NA	NA	False	NA	NA	NA	137784964	137780170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137784855
70370	chr2	-	1028	1	Intergenic	novelGene_2800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCCCATCAATAATATGAG	NA	False	NA	NA	False	NA	NA	NA	168808798	168807770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_168807800_168808800
70373	chr11	-	447	2	ISM	ENSMUSG00000049491.16	ENSMUST00000128244.8	1841	12	25976	-2	25976	2	3prime_fragment	FALSE	canonical	3	9	junction_1	0	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCCAGCATCTTTCTTA	5303	False	NA	NA	False	NA	NA	NA	55016536	55015648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_55015988_55016428
70375	chr19	-	328	1	Intergenic	novelGene_1188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCCACCCACACACAGGG	NA	False	NA	NA	False	NA	NA	NA	3583424	3583096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_3583100_3583400
70376	chr11	+	301	3	ISM	ENSMUSG00000020372.16	ENSMUST00000125166.2	637	6	1061	-12	1061	-3	3prime_fragment	FALSE	canonical	3	5433	junction_2	679.5	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCTTCTATATGTGA	NA	False	NA	NA	False	NA	NA	NA	48695039	48696912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48695124_48696371_48696483_48696806
70377	chr2	-	1762	1	NIC	ENSMUSG00000026767.13	novel	2316	15	NA	NA	1942	33	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAGTAACATTGAAACAT	NA	False	NA	NA	False	NA	NA	NA	12407598	12405836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_12405800_12407600
70378	chrM	+	378	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	303	3	303	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTCACTATGAAGCTAA	277	False	NA	NA	False	NA	NA	NA	7315	7693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7300_7700
70379	chr10	-	703	4	ISM	ENSMUSG00000020061.19	ENSMUST00000238199.2	3650	27	78653	-57	-3094	0	3prime_fragment	FALSE	canonical	1	1	junction_2	1.63299316185545	10	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTTGTGCTGTCCTACT	NA	False	NA	NA	False	NA	NA	NA	88362234	88354143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_88354432_88358828_88359016_88360830_88360968_88362143
70380	chr13	+	1642	10	ISM	ENSMUSG00000021318.16	ENSMUST00000110510.4	8170	15	177098	6566	177098	-6566	internal_fragment	FALSE	canonical	2	12	junction_6	4.76354469116134	4	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCAGTCTTCATGCAGCAG	8420	False	NA	NA	False	NA	NA	NA	15815662	15898045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_15815860_15818878_15819026_15823105_15823308_15834546_15834761_15835465_15835580_15836974_15837116_15888083_15888234_15889534_15889700_15894639_15894931_15898024
70381	chr7	-	892	5	NIC	ENSMUSG00000025466.20	novel	1685	6	NA	NA	-2	-34	combination_of_known_junctions	FALSE	canonical	3	56	junction_4	179.398125686976	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGATCGGGGAGGGAGTC	1604	False	NA	NA	False	NA	NA	NA	139682221	139679440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
70383	chr10	+	682	3	NNC	ENSMUSG00000047692.7	novel	1264	6	NA	NA	55389	-3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATCACTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	70759887	70770151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_70759992_70760941_70761054_70769685
70384	chr9	+	950	2	Genic_Genomic	ENSMUSG00000118653.2	novel	988	1	NA	NA	-30	-21	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1145	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56344710	56345707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_56344843_56344889
70386	chr3	+	626	5	NNC	ENSMUSG00000027533.11	novel	987	4	NA	NA	-16	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	157.175658102646	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATTTATGATATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	10077648	10081391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_10077779_10080030_10080121_10080164_10080204_10080531_10080634_10081126
70387	chr1	+	2137	1	FSM	ENSMUSG00000099337.2	ENSMUST00000088648.5	372	1	-826	-939	-826	939	mono-exon	FALSE	NA	NA	NA	NA	NA	2	69	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGTGTGATGTCACAGCA	NA	False	NA	NA	False	NA	NA	NA	136434320	136436457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_136434300_136436500
70389	chrX	-	726	5	NNC	ENSMUSG00000046032.17	novel	1002	5	NA	NA	25	-19	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	196.230731538156	19	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACCACTGTGAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	100266130	100255583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100255735_100257379_100257471_100258006_100258132_100259088_100259185_100265867
70390	chr5	+	1632	9	ISM	ENSMUSG00000018001.19	ENSMUST00000116456.10	3738	13	36	6673	-18	-4679	5prime_fragment	FALSE	canonical	3	62	junction_1	7.08762125116742	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCTTGTGGGAGTAAGC	NA	False	NA	NA	False	NA	NA	NA	143608237	143689332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143683470_143683552_143687073_143687187_143687351_143687501_143688568
70391	chr9	-	1618	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	351	4	50	-4	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	1	105	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGAGTTTGAACCTTGT	NA	False	NA	NA	False	NA	NA	NA	35481343	35472119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
70392	chr9	-	1861	9	NNC	ENSMUSG00000097836.2	novel	4583	5	NA	NA	-119444	-117174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGAGCCGGGAGCGCGTC	NA	False	NA	NA	False	NA	NA	NA	76041918	75922298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75922462_75963449_75963532_75963731_75963840_75979906_75980005_75981949_75982103_75988676_75988735_75991582_75991768_76037587_76037720_76041036
70394	chr4	-	420	3	NNC	ENSMUSG00000028234.7	novel	3706	4	NA	NA	-72	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4154.5	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	38	False	NA	NA	False	NA	NA	NA	3835560	3834469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3834687_3835165_3835292_3835483
70395	chr5	+	1015	2	NNC	ENSMUSG00000063646.19	novel	849	3	NA	NA	2843	18	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	62	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTTAATTTTATTTAA	3224	False	NA	NA	False	NA	NA	NA	37245556	37249391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_37245651_37248470
70396	chr4	-	1054	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	104	6	-27	-5	multi-exon	FALSE	canonical	3	13	junction_1	2.31503239718152	97	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCATGCCAGGGCCCTTT	9873	False	NA	NA	False	NA	NA	NA	43523491	43514716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
70397	chr7	-	915	9	NIC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	37	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	18.6195461813654	35	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACTTCACAGGATGATT	9442	False	NA	NA	False	NA	NA	NA	44839453	44833052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44837565_44837722_44838276_44838342_44838764_44838825_44839060_44839118_44839373
70398	chr15	+	923	2	FSM	ENSMUSG00000068522.5	ENSMUST00000090025.5	1348	2	408	17	408	-17	multi-exon	FALSE	canonical	3	258	junction_1	0	170	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGCAGACCTAATTG	NA	False	NA	NA	False	NA	NA	NA	51903910	51909101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_51903927_51908194
70400	chr5	-	364	2	ISM	ENSMUSG00000086847.2	ENSMUST00000135385.2	1345	3	8	3142	8	-3142	5prime_fragment	FALSE	canonical	3	3	junction_1	0	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGGGACTGCAGGTAGGGA	2711	False	NA	NA	False	NA	NA	NA	119829275	119826301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_119826463_119829072
70401	chr16	-	987	1	Intergenic	novelGene_3588	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTCCAGGGCCAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	8985792	8984805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_8984800_8985800
70402	chr19	-	470	2	Genic_Genomic	ENSMUSG00000080885.2	novel	642	1	NA	NA	-37	55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCATCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37273232	37272498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_37272678_37272941
70403	chr17	-	467	1	ISM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	16401	890	1477	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGTTTTGCTGGATTT	NA	False	NA	NA	False	NA	NA	NA	71281484	71281017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_71281000_71281500
70404	chr3	+	1897	1	Antisense	novelGene_ENSMUSG00000039735.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAAATCCGTAATTATA	NA	False	NA	NA	False	NA	NA	NA	122346010	122347907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_122346000_122347900
70405	chr19	-	777	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	24	-26	2	26	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	464	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGAGAGAGAGGACAGAAT	5098	False	NA	45	True	NA	NA	NA	8751807	8749862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
70406	chr10	+	2986	6	ISM	ENSMUSG00000020189.16	ENSMUST00000095310.3	3622	23	121339	-1728	38073	1728	3prime_fragment	FALSE	canonical	3	69	junction_1	7.73563184232549	8	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTGACACAGTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	111122001	111131343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_111122114_111123687_111123874_111124553_111124642_111125649_111125756_111127351_111127455_111128952
70407	chr3	+	1656	1	Genic_Genomic	ENSMUSG00000105447.2	novel	NA	NA	NA	NA	711	633	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTCTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	127631270	127632926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_127631300_127632900
70408	chr17	-	647	5	FSM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	19	196	-11	0	multi-exon	FALSE	canonical	3	219	junction_4	17.0934929139717	637	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	NA	False	NA	NA	NA	27784711	27782742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784633
70409	chr11	-	2005	1	Genic_Genomic	ENSMUSG00000075389.4	novel	NA	NA	NA	NA	-115	-256	mono-exon	FALSE	NA	NA	NA	NA	NA	12	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGATTTTTTTTTTCTCTC	6028	False	NA	NA	False	NA	NA	NA	120080793	120078788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_120078800_120080800
70410	chr14	+	1690	3	Antisense	novelGene_ENSMUSG00000022076.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	2	76	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAGAAAAATAAAGACTA	NA	False	NA	NA	False	NA	NA	NA	96345203	96356145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_96345261_96347378_96347551_96354684
70411	chr1	+	1758	2	ISM	ENSMUSG00000026031.16	ENSMUST00000114309.8	2010	5	12950	2903	-4308	-922	internal_fragment	FALSE	canonical	0	0	junction_1	0	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATGAGAACATGCTTAT	7011	False	NA	NA	False	NA	NA	NA	58765402	58769483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_58765892_58768214
70412	chr10	-	974	4	NNC	ENSMUSG00000110847.2	novel	913	2	NA	NA	-521	234	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	41	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAATAATATAATAATA	NA	False	NA	NA	False	NA	NA	NA	91095727	91087772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_91088081_91094375_91094656_91095016_91095236_91095560
70413	chr11	+	598	3	NIC	ENSMUSG00000020492.12	novel	3037	4	NA	NA	36	319	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	94	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGGCCCTGGAGCTCA	NA	False	NA	NA	False	NA	NA	NA	87000112	87013252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87000131_87006929_87007017_87012759
70415	chrX	-	682	5	Antisense	novelGene_ENSMUSG00000001131.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	201	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCAGGGGCTGCACAGT	NA	False	NA	NA	False	NA	NA	NA	20740972	20736526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20736559_20737266_20737401_20739287_20739414_20739604_20739732_20740709
70416	chr17	-	2443	12	Antisense	novelGene_ENSMUSG00000024044.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCAGCGGTGGCGGCAG	NA	False	NA	NA	False	NA	NA	NA	69569987	69382765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_69382988_69514877_69515069_69517178_69517377_69545337_69545443_69546739_69546785_69550582_69550663_69554534_69554747_69555621_69555711_69560388_69560542_69564363_69564462_69566005_69566191_69569122
70418	chr2	+	878	1	NIC	ENSMUSG00000118526.3	novel	577	8	NA	NA	33375	-23535	mono-exon	FALSE	NA	NA	NA	NA	NA	21	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACTTATTGTAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	167990171	167991049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_167990200_167991000
70419	chr15	+	1806	10	NNC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	23219	-11330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	211.823185058659	1	117	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGATAAGTAACTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	82055444	82076690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069629_82076406
70420	chr14	+	1365	4	FSM	ENSMUSG00000072572.10	ENSMUST00000047726.12	2334	4	23	946	23	-7	multi-exon	FALSE	canonical	3	11	junction_3	1.24721912892465	56	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTCAACCTCATTGCAA	NA	False	NA	NA	False	NA	NA	NA	52131089	52133256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_52131372_52131545_52131677_52131912_52131964_52132355
70421	chr11	+	399	2	ISM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	97	19553	97	-8626	5prime_fragment	FALSE	canonical	3	353	junction_1	0	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGGATTATACCTAGGT	NA	False	NA	NA	False	NA	NA	NA	83832984	83834361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_83833091_83834068
70425	chr2	-	1258	3	FSM	ENSMUSG00000047617.12	ENSMUST00000138079.8	765	3	28	-521	13	-6	multi-exon	FALSE	canonical	3	16	junction_2	1	41	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCCAGACTTGAGTTGTG	5335	False	NA	NA	False	NA	NA	NA	25351007	25349502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25350370_25350456_25350507_25350666
70426	chr16	+	1245	1	Intergenic	novelGene_3646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACCCCAACTTGATCACG	NA	False	NA	NA	False	NA	NA	NA	35898391	35899636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_35898400_35899600
70427	chr6	+	1281	5	ISM	ENSMUSG00000107476.4	ENSMUST00000203848.3	1776	6	9	9085	9	-9085	5prime_fragment	FALSE	canonical	2	4	junction_3	3.04138126514911	6	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTACAGACAGTTGTG	2575	False	NA	NA	False	NA	NA	NA	48481279	48492261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_48481485_48485205_48485318_48488748_48489447_48491085_48491261_48492170
70428	chr11	-	1448	4	NIC	ENSMUSG00000038352.16	novel	1571	6	NA	NA	409	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3.85861230093008	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTCACTTCTTATTTTTG	NA	False	NA	NA	False	NA	NA	NA	97886346	97880403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97881166_97884250_97884335_97885163_97885312_97885892
70429	chr11	+	967	1	Antisense	novelGene_ENSMUSG00000018428.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTCACAAAGTCAGACCTG	6098	False	NA	NA	False	NA	NA	NA	88724571	88725538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_88724600_88725500
70431	chr4	+	1328	8	ISM	ENSMUSG00000040720.16	ENSMUST00000055372.14	3954	13	50	14181	-35	-14181	5prime_fragment	FALSE	canonical	3	57	junction_2	7.50238057457193	1	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGACTGGACAATGCAAGC	-16	True	NA	NA	False	NA	NA	NA	11486007	11513440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027
70433	chr7	+	1389	4	FSM	ENSMUSG00000030790.16	ENSMUST00000033054.10	1390	4	1	0	1	0	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCGGTTCATGCAT	5114	False	NA	NA	False	NA	NA	NA	110226868	110229027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_110227029_110227463_110227584_110227731_110227882_110228068
70434	chr8	+	1733	3	NNC	ENSMUSG00000059854.9	novel	15783	87	NA	NA	78655	41767	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	13	2	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTCTCTGGTATCAGA	NA	False	NA	NA	False	NA	NA	NA	111249775	111256020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111249842_111252075_111252261_111254538
70435	chr7	-	803	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	-5	-16	combination_of_known_junctions	FALSE	canonical	3	35	junction_4	106.699051073569	16	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTATCAGGAGCAATGGC	NA	False	NA	NA	False	NA	NA	NA	81439231	81431945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439175
70437	chr11	+	1391	1	Intergenic	novelGene_2415	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAATGTTCAAGTATCA	NA	False	NA	NA	False	NA	NA	NA	79621164	79622555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_79621200_79622600
70438	chr17	+	1026	5	ISM	ENSMUSG00000041062.8	ENSMUST00000047098.7	2626	16	8944	-5	8944	5	3prime_fragment	FALSE	canonical	1	2	junction_1	2.73861278752583	16	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTGCTAGAGCCTTG	2207	False	NA	NA	False	NA	NA	NA	25963959	25967309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_25964067_25965029_25965161_25965279_25965375_25965747_25965998_25966866
70441	chr19	+	449	1	Intergenic	novelGene_1235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACCGAAAAAAAAAAAAAAAA	5836	False	NA	NA	False	NA	NA	NA	25010494	25010943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_25010500_25010900
70443	chr7	+	769	6	Antisense	novelGene_ENSMUSG00000030538.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCACTTCCGTCCTCGG	7942	False	NA	NA	False	NA	NA	NA	79877576	79882358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_79877831_79877909_79878029_79878145_79878299_79880065_79880173_79882091_79882126_79882256
70444	chr6	+	1393	1	ISM	ENSMUSG00000025702.16	ENSMUST00000079012.13	4450	8	70123	1	2970	1	mono-exon	FALSE	NA	NA	NA	NA	NA	37	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTGATGAGAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	116385107	116386500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_116385100_116386500
70445	chr2	+	523	2	Intergenic	novelGene_2790	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTGTGTTTAGAGTGTG	5492	False	NA	NA	False	NA	NA	NA	168236756	168244666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168236790_168244176
70447	chr17	+	646	3	FSM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	-14	13	-14	-13	multi-exon	FALSE	canonical	3	814	junction_1	143	4337	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTTCCTATACTGTC	NA	False	NA	NA	False	NA	NA	NA	45997233	46009408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_45997354_46006407_46006499_46008973
70448	chr18	+	787	4	NIC	ENSMUSG00000024273.9	novel	1065	5	NA	NA	47	-31	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	88.1375188113565	31	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGTTTTTATGATAAAGG	10	False	NA	NA	False	NA	NA	NA	24603972	24610824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_24604038_24604118_24604142_24608581_24608782_24610325
70450	chr6	+	691	4	FSM	ENSMUSG00000034192.6	ENSMUST00000040607.6	743	4	49	3	0	2	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	7809	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTTTTTTTTTAATGTG	NA	False	NA	NA	False	NA	NA	NA	91492958	91499604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
70451	chr9	+	869	3	FSM	ENSMUSG00000066233.7	ENSMUST00000084733.7	1041	3	75	97	-17	-97	multi-exon	FALSE	canonical	3	26	junction_2	1.5	37	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAACTTGATGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	122850465	122852455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_122850636_122851230_122851378_122851903
70452	chr13	-	2619	1	Intergenic	novelGene_1305	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	143	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACTGACATGACCTCACA	NA	False	NA	NA	False	NA	NA	NA	6682999	6680380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_6680400_6683000
70453	chrX	+	1870	16	FSM	ENSMUSG00000031170.15	ENSMUST00000033512.11	1868	16	-5	3	-5	2	multi-exon	FALSE	canonical	1	1	junction_9	2.63818119165458	10	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTGGTCTGAGCCGTGT	5408	False	NA	NA	False	NA	NA	NA	8137614	8146415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_8137745_8138125_8138183_8138269_8138349_8138890_8139007_8139113_8139188_8139825_8139919_8140036_8140116_8142358_8142442_8142817_8142877_8142978_8143108_8143259_8143340_8143931_8144033_8144267_8144384_8145096_8145242_8145331_8145436_8145990
70455	chr9	-	1500	5	NIC	ENSMUSG00000031934.15	novel	5732	5	NA	NA	-8	-7	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	28.0223125384041	22	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTAATGACACCCTCTGT	NA	False	NA	NA	False	NA	NA	NA	14955101	14917087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_14917514_14918656_14919316_14921331_14921553_14932677_14932818_14955047
70456	chr6	-	1670	9	NNC	ENSMUSG00000029821.16	novel	2133	10	NA	NA	10304	-352	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	17.1026313764871	1	79	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCACTTTATCTTC	NA	False	NA	NA	False	NA	NA	NA	50228423	50184734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206433_50222909_50223103_50228255
70457	chr13	-	2545	6	FSM	ENSMUSG00000042258.14	ENSMUST00000036060.13	2516	6	-30	1	-30	-1	multi-exon	FALSE	canonical	1	2	junction_1	0.4	8	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAACGCAATGATTCA	NA	False	NA	NA	False	NA	NA	NA	116446255	116434817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_116436133_116438146_116438315_116439581_116439869_116441753_116442014_116444809_116445000_116445930
70458	chr8	-	1678	2	ISM	ENSMUSG00000031971.16	ENSMUST00000034452.12	2390	3	14251	110	14251	-97	3prime_fragment	FALSE	canonical	3	78	junction_1	0	12	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCACTTTTAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	124572018	124567679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_124569258_124571918
70459	chr15	+	1513	5	Antisense	novelGene_ENSMUSG00000099083.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCGAGAAGTGGGGGCGAG	647	False	NA	NA	False	NA	NA	NA	102461251	102533919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_102462359_102465896_102466016_102471750_102471846_102502106_102502176_102533796
70460	chr6	-	1910	10	FSM	ENSMUSG00000030339.8	ENSMUST00000032489.8	2107	10	185	12	185	-12	multi-exon	FALSE	canonical	3	11	junction_6	2.62936879248872	12	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGTCCTTTATTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	125290663	125283545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125284435_125284892_125285110_125286156_125286183_125286421_125286530_125289005_125289086_125289232_125289330_125289714_125289874_125289956_125290083_125290352_125290450_125290552
70461	chr2	-	1130	6	NNC	ENSMUSG00000016257.16	novel	1553	6	NA	NA	-6	-229	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	355.9438157912	1	76	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGAGTGAAAATTAACAGT	NA	False	NA	NA	False	NA	NA	NA	174314697	174307088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310164_174311129_174311299_174314624
70463	chr2	-	1783	1	NIC	ENSMUSG00000027422.16	novel	979	8	NA	NA	504	4974	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCAAAACAAGCCTTGGTA	NA	False	NA	NA	False	NA	NA	NA	143824581	143822798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_143822800_143824600
70464	chr5	-	1747	7	Antisense	novelGene_ENSMUSG00000035851.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATAGTCTTTAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	86984514	86976921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_86977338_86978411_86978494_86979520_86979558_86979653_86979695_86979805_86979869_86981365_86981502_86983542
70465	chr1	+	1684	1	FSM	ENSMUSG00000114694.2	ENSMUST00000225273.2	903	1	-41	-740	-41	740	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTCATTCCTTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	151074157	151075841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_151074200_151075800
70466	chr8	-	752	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3516	-1	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	15.5897402159241	309	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTATCTGATAGGGCTG	NA	False	NA	NA	False	NA	NA	NA	11716120	11705480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11715899
70467	chr9	-	806	2	NNC	ENSMUSG00000031922.13	novel	1643	9	NA	NA	1776	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAGCTAACAAAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	13719934	13719091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13719825_13719861
70470	chr9	-	1490	1	Antisense	novelGene_ENSMUSG00000025785.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCGCTGGCGTGTCATCAG	7180	False	NA	NA	False	NA	NA	NA	122943803	122942313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_122942300_122943800
70471	chr2	-	2249	1	Intergenic	novelGene_2738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATGTCCTTTTCTTCCT	6311	False	NA	NA	False	NA	NA	NA	153219108	153216859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_153216900_153219100
70472	chr17	+	823	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-15	340	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3875.88327836378	1	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATTAAAGTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	6869175	6875288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6869236_6870885_6870928_6873712_6873967_6874472_6874551_6874899
70473	chr13	-	1636	6	FSM	ENSMUSG00000006611.16	ENSMUST00000091706.14	3572	6	133	1803	-7	549	multi-exon	FALSE	canonical	0	0	junction_2	1.85472369909914	16	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGAATCACCCTCGGAG	NA	False	NA	NA	False	NA	NA	NA	23894704	23887819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23888410_23889606_23889718_23889843_23890120_23890749_23891050_23892010_23892275_23894609
70474	chr17	-	2005	3	NNC	ENSMUSG00000039193.10	novel	3110	8	NA	NA	14329	348	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.5	30	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACTCTGATTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	74740872	74732084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_74732747_74732929_74734130_74740729
70475	chr1	+	1672	6	Antisense	novelGene_ENSMUSG00002076180.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCACCAACCACGCAGGGAG	NA	False	NA	NA	False	NA	NA	NA	192612295	192717961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_192613235_192615420_192615693_192662652_192662870_192669025_192669191_192709277_192709324_192717928
70477	chrX	+	1193	8	NNC	ENSMUSG00000084330.2	novel	434	5	NA	NA	-2207	5366	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.8703477668983	2	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTGTCCTGAGTTGCAC	NA	False	NA	NA	False	NA	NA	NA	134625539	134635589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134625674_134627458_134627855_134628012_134628123_134628783_134628921_134629024_134629068_134629492_134629566_134635168_134635227_134635347
70478	chr14	-	1200	5	Intergenic	novelGene_620	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.6393596310755	27	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCAGGCTCTGTCAGA	NA	False	NA	NA	False	NA	NA	NA	76857764	76844109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_76844476_76844629_76845025_76845729_76845903_76857393_76857612_76857716
70479	chr1	+	1202	4	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-55	-13753	multi-exon	FALSE	canonical	0	0	junction_1	15.5777619273972	10	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTAGTGTAACTCCAGT	NA	False	NA	NA	False	NA	NA	NA	63239416	63320428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_63239963_63246673_63246774_63317089_63317143_63319925
70481	chr15	+	730	6	Antisense	novelGene_ENSMUSG00000003355.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCAGACTGGTATGGGC	NA	False	NA	NA	False	NA	NA	NA	98622267	98626043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98622533_98624364_98624436_98624780_98624813_98625089_98625179_98625562_98625627_98625834
70482	chr5	-	1017	9	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	97	-1515	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	201.394513331421	1	56	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGCAGCACCTACCTCA	NA	False	NA	NA	False	NA	NA	NA	34093497	34056774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059193_34060747_34060805_34077835_34077998_34079189_34079362_34093369
70483	chr14	-	735	2	FSM	ENSMUSG00000021905.15	ENSMUST00000144149.2	751	2	-7	23	-7	-23	multi-exon	FALSE	canonical	3	570	junction_1	0	34	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTGAAAATAACATCATCC	NA	False	NA	NA	False	NA	NA	NA	31807250	31804855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31805204_31806863
70484	chr4	-	977	6	NIC	ENSMUSG00000028637.17	novel	1789	5	NA	NA	-7	-186	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	8.84081444212014	22	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTCTAAAGGGCCACT	9758	False	NA	NA	False	NA	NA	NA	119272683	119230866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_119230963_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
70486	chr12	+	1309	2	Antisense	novelGene_ENSMUSG00000113520.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_1	0	13	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTTGTCAGTCGTGATTT	10	False	NA	NA	False	NA	NA	NA	38780120	38792423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_38780406_38791399
70487	chr8	-	922	8	NIC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	3	45	junction_6	3.4166459266004	129	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTACGTGTGTTATATAT	NA	False	NA	NA	False	NA	NA	NA	72124387	72112993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
70488	chrX	-	913	7	NIC	ENSMUSG00000073177.9	novel	951	8	NA	NA	-1	-4	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	8.67307455417179	100	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAGTGATTTTTTGCAAT	NA	False	NA	NA	False	NA	NA	NA	55258242	55235190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55247366_55247437_55248032_55248151_55258173
70489	chr17	+	1544	2	Intergenic	novelGene_309	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACCTCAAAAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	85542716	85562162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_85542770_85560671
70490	chr12	+	1040	7	NNC	ENSMUSG00000059060.16	novel	1759	8	NA	NA	-25	-181250	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	24.3156328315757	168	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTGTCCCTTTTCCTTCTT	8688	False	NA	NA	False	NA	NA	NA	79344099	79374180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_79344360_79347315_79347422_79349249_79349364_79350105_79350223_79361605_79361743_79371740_79371861_79373994
70493	chr9	-	1634	1	NIC	ENSMUSG00000066319.7	novel	2463	3	NA	NA	3027	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTTTTAAAAAAATGATTCA	NA	False	NA	NA	False	NA	NA	NA	110815652	110814018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110814000_110815700
70494	chr13	-	1363	6	NNC	ENSMUSG00000021536.8	novel	4211	25	NA	NA	356652	-17	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	1.74355957741627	8	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTCTAGTGCCCGAA	NA	False	NA	NA	False	NA	NA	NA	68791008	68768178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68768992_68773906_68774032_68779028_68779144_68788828_68788937_68790575_68790723_68790953
70497	SIRV4	+	928	2	FSM	SIRV4C	SIRV410	950	2	-1	23	-1	-23	multi-exon	FALSE	canonical	3	1621	junction_1	0	5006	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGTCAATAACTTTAACC	NA	False	NA	NA	False	NA	NA	NA	1454	2748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4_+_1886_2251
70499	chr1	-	613	3	ISM	ENSMUSG00000026110.16	ENSMUST00000154819.8	2796	15	-3	52195	-3	-185	5prime_fragment	FALSE	canonical	3	60	junction_1	84.5	1	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCCGCCGTACAGATTG	NA	False	NA	NA	False	NA	NA	NA	37575488	37534991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_37535095_37537680_37537822_37575119
70500	chr14	+	931	4	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10676	225	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	4.24264068711928	224	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTACCCATGGAGTTCAGT	NA	False	NA	NA	False	NA	NA	NA	76753355	76768411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76753538_76764032_76764202_76766569_76766669_76767930
70501	chr10	-	1498	1	Intergenic	novelGene_3502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACCTCCATCACCTAAAAC	NA	False	NA	NA	False	NA	NA	NA	84937988	84936490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_84936500_84938000
70502	chr8	+	987	1	Intergenic	novelGene_1679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTCCCCCATACCCTACC	1641	False	NA	NA	False	NA	NA	NA	81668830	81669817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_81668800_81669800
70503	chr4	-	1099	2	Intergenic	novelGene_1982	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_1	0	140	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTTATGTCTTGATAG	NA	False	NA	NA	False	NA	NA	NA	134163599	134160778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_134161794_134163515
70504	chr2	-	2201	9	FSM	ENSMUSG00000032841.16	ENSMUST00000043845.14	2290	9	55	34	-3	-34	multi-exon	TRUE	canonical	1	4	junction_4	1.6583123951777	11	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTTTGCAAATATTTG	1032	False	NA	NA	False	NA	NA	NA	101627998	101546619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_101547812_101559768_101559896_101564949_101565091_101571631_101571724_101577070_101577129_101588854_101588904_101601279_101601361_101602474_101602754_101627816
70505	chr19	-	1890	1	NIC	ENSMUSG00000025195.10	novel	6100	16	NA	NA	-10715	25495	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACATCTATCTATCTTT	756	False	NA	NA	False	NA	NA	NA	43889845	43887955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_43888000_43889800
70506	chr12	+	1399	4	Antisense	novelGene_ENSMUSG00000020650.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCTTAATTCATGCTGG	NA	False	NA	NA	False	NA	NA	NA	31645357	31670192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_31646379_31650644_31650744_31667073_31667177_31670016
70509	chr5	+	763	4	ISM	ENSMUSG00000029658.18	ENSMUST00000202902.2	2574	23	67788	-4	15743	4	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	38	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGATTCTCGCTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	149520985	149535363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_149521054_149522668_149522863_149529753_149529852_149534960
70510	chr2	-	1139	3	ISM	ENSMUSG00000037279.14	ENSMUST00000103171.10	1547	4	588	0	219	0	3prime_fragment	FALSE	canonical	3	14	junction_1	5.5	29	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTTTAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	144173027	144147094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_144147840_144159630_144159821_144172823
70511	chr10	+	2654	1	Antisense	novelGene_ENSMUSG00000052798.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTGCAGCCTGGCCGCC	NA	False	NA	NA	False	NA	NA	NA	117625898	117628552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117625900_117628600
70512	chr2	-	624	4	NNC	ENSMUSG00000076437.12	novel	747	4	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1100.69594146411	69	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAGGAGCAAGTTTAAA	388	False	NA	NA	False	NA	NA	NA	84501022	84499567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84499744_84500354_84500461_84500588_84500735_84500826
70516	chr1	+	1115	10	NNC	ENSMUSG00000026203.17	novel	1823	10	NA	NA	1	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	18.0705066303229	8	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGCAAATAAAGCTGAGT	2238	False	NA	NA	False	NA	NA	NA	75213109	75222308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75213182_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75222120
70517	chr19	-	706	6	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	20	-650	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	485.210304919424	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGGTGGTGAGCCCGA	NA	False	NA	NA	False	NA	NA	NA	7183661	7176224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176467_7177023_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
70518	chr4	+	1466	5	FSM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	66	19	66	-19	multi-exon	FALSE	canonical	3	185	junction_1	25.1047804212664	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCCCATGTTTTCCACCA	9344	False	NA	NA	False	NA	NA	NA	130001414	130021908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
70520	chr3	-	710	1	FSM	ENSMUSG00000039735.17	ENSMUST00000197342.2	7045	1	6313	22	6313	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGCTATAAAATTAAT	NA	False	NA	NA	False	NA	NA	NA	122342448	122341738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_122341700_122342400
70521	chr7	+	680	1	ISM	ENSMUSG00000044876.16	ENSMUST00000108567.9	5104	5	17965	2685	6871	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCATGTGCCACCATG	2219	False	NA	40	True	NA	NA	NA	6193445	6194125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_6193400_6194100
70522	chr9	-	789	1	ISM	ENSMUSG00000097777.8	ENSMUST00000180727.8	2100	3	16481	79	11729	-79	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAATTAATCTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	95824965	95824176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_95824200_95825000
70523	chr12	-	769	5	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1844	-4179	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	53.7697638082966	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGGATGTTATGGTGCAG	9516	False	NA	NA	False	NA	NA	NA	110805517	110785454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110785812_110792875_110792947_110794474_110794565_110800559_110800675_110805381
70524	chr6	-	1264	4	NNC	ENSMUSG00000046806.14	novel	3681	4	NA	NA	287	-10	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	9.93310961716756	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACACGGTGTGTGTTTGTG	8964	False	NA	NA	False	NA	NA	NA	34853628	34850639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_34851631_34852286_34852329_34852471_34852548_34853473
70526	chr16	+	632	7	ISM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	11572	471	-3206	17	3prime_fragment	FALSE	canonical	3	174	junction_6	11.4127122105133	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGTCATTTTAGATAC	NA	False	NA	NA	False	NA	NA	NA	8300223	8308077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
70527	chr5	+	828	4	NNC	ENSMUSG00000092354.8	novel	619	3	NA	NA	-48	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.8822509939086	3	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCAATTTCCTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	101987972	101992196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_101988098_101989624_101989716_101989774_101989940_101991749
70528	chr12	-	936	6	ISM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	2	25813	2	17295	5prime_fragment	FALSE	canonical	3	313	junction_1	47.6931860961291	45	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACATTTTCTTCTGTCAT	NA	False	NA	NA	False	NA	NA	NA	31684632	31666778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
70529	chr1	-	685	2	FSM	ENSMUSG00000087213.3	ENSMUST00000150749.2	711	2	31	-5	0	5	multi-exon	FALSE	canonical	3	111	junction_1	0	741	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGCTACCTATGTGGTTT	7958	False	NA	NA	False	NA	NA	NA	64729787	64719024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_64719545_64729622
70530	chr2	-	1196	12	NIC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	-10	-84	intron_retention	FALSE	canonical	3	34	junction_5	10.4470328738723	44	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAACTGGAGACTGCAGC	7301	False	NA	NA	False	NA	NA	NA	154400796	154387048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
70533	ERCC-00092	+	1108	1	FSM	ERCC-00092A	DQ459425	1108	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00092_+_0_1100
70537	chr11	+	703	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	33	15	0	-15	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	1	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97917782	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
70538	chr15	-	1125	10	NNC	ENSMUSG00000099083.8	novel	2887	11	NA	NA	31208	-3488	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	21.6527020524654	2	28	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGAAACTGTGGGTGTCC	8670	False	NA	NA	False	NA	NA	NA	102502149	102449245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102500127_102500204_102502106
70539	chr17	+	508	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	-14	-1	2	1	multi-exon	FALSE	canonical	3	181	junction_2	1185.6477835625	59	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTAAAGGCAGGCTTGC	NA	False	NA	NA	False	NA	NA	NA	57024768	57029142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
70540	chr2	+	1166	6	FSM	ENSMUSG00000003604.15	ENSMUST00000003705.12	4735	6	244	3325	244	337	multi-exon	FALSE	canonical	3	555	junction_4	26.4227174983952	114	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATGGATGTTTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	112323552	112461593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
70542	chr17	+	1337	4	FSM	ENSMUSG00000034786.18	ENSMUST00000038244.15	1343	4	4	2	4	-2	multi-exon	FALSE	canonical	2	5	junction_1	3.29983164553722	32	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAAGACTGGTATCTGG	NA	False	NA	NA	False	NA	NA	NA	34808783	34810726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34809235_34809434_34809538_34809715_34809916_34810143
70543	chr15	-	1042	3	Intergenic	novelGene_3359	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	11	junction_1	2.5	16	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAATTGAGTTTCTAGAA	1464	False	NA	NA	False	NA	NA	NA	97029749	97026302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97026566_97026963_97027102_97029108
70544	chr3	+	2526	1	Antisense	novelGene_ENSMUSG00000037016.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCGGCTGGAAGCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	53561928	53564454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_53561900_53564500
70546	chr7	-	2111	4	Antisense	novelGene_ENSMUSG00000004500.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCCAGACCGCCGGAAGC	NA	False	NA	NA	False	NA	NA	NA	12705545	12699769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_12700226_12702720_12702857_12703293_12703407_12704139
70549	chr2	-	486	2	Antisense	novelGene_ENSMUSG00000048186.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGACAATAAACACAAATAT	NA	False	NA	NA	False	NA	NA	NA	4768099	4757527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_4757803_4767888
70550	chr2	+	1396	4	Antisense	novelGene_ENSMUSG00000068373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_3	3.74165738677394	14	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAAAGTGGGGAGATA	3053	False	NA	NA	False	NA	NA	NA	104030898	104052419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_104031169_104031298_104031363_104031614_104031755_104051497
70551	chr7	+	617	6	NNC	ENSMUSG00000030842.13	novel	1119	5	NA	NA	32	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	341.132818708491	31	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGATAAAGAAAGTATATTC	7059	False	NA	NA	False	NA	NA	NA	101555142	101561071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479_101560511_101560941
70552	chrX	+	811	7	FSM	ENSMUSG00000031329.5	ENSMUST00000033691.5	812	7	1	0	1	0	multi-exon	FALSE	canonical	3	20	junction_2	4.2687494916219	171	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTGCGTTTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	102458073	102468186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_102458253_102459640_102459677_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
70554	chr6	-	513	1	NIC	ENSMUSG00000046806.14	novel	3326	4	NA	NA	1	-2201	mono-exon	FALSE	NA	NA	NA	NA	NA	53	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTGAAATGTGTGAATTAG	7598	False	NA	NA	False	NA	NA	NA	34854994	34854481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_34854500_34855000
70556	chr2	+	1202	2	Intergenic	novelGene_2631	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGCTGCTGCTGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	56665466	56666739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_56666633_56666703
70557	chrX	-	552	3	NIC	ENSMUSG00000031325.16	novel	685	4	NA	NA	-16	-9	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	5.5	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCATCAAGGTATCTAAGAA	NA	False	NA	NA	False	NA	NA	NA	102355404	102273642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_102273781_102277627_102277876_102355238
70559	chr3	-	531	2	FSM	ENSMUSG00000104960.2	ENSMUST00000199645.2	528	2	-3	0	-3	0	multi-exon	FALSE	canonical	3	458	junction_1	0	52	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	NA	False	NA	NA	NA	123301985	123301205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_123301512_123301760
70560	chr18	-	1430	4	ISM	ENSMUSG00000024293.17	ENSMUST00000145320.2	2249	11	33018	10	32972	-10	3prime_fragment	FALSE	canonical	3	113	junction_3	17.4419672692682	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATACTTGATAGCTTT	NA	False	NA	NA	False	NA	NA	NA	10577091	10566639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000
70561	chr7	+	643	3	NNC	ENSMUSG00000033429.11	novel	327	2	NA	NA	5957	-2	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	44.5	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCATGTATTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	64048479	64061867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_64048662_64049916_64050093_64061582
70563	chr14	+	841	1	Genic_Genomic	ENSMUSG00000040651.10	novel	NA	NA	NA	NA	-731	-5973	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAACAAATTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	27158956	27159797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_27159000_27159800
70565	chrX	-	1265	9	ISM	ENSMUSG00000031370.13	ENSMUST00000112289.9	2735	11	-8	4521	1	4	5prime_fragment	FALSE	canonical	3	144	junction_2	285.800383790855	104	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTTTATTTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	162741593	162722959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
70567	chr11	+	348	1	ISM	ENSMUSG00000041046.8	ENSMUST00000045374.8	1233	3	18607	0	18563	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTATTTCTCATTTTAT	972	False	NA	NA	False	NA	NA	NA	6627127	6627475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_6627100_6627500
70568	chr11	+	1482	6	NIC	ENSMUSG00000092300.8	novel	915	7	NA	NA	5	-10	intron_retention	FALSE	canonical	3	6	junction_5	1.72046505340853	29	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCCTGAGCTTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	116106833	116111103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116106945_116107236_116107507_116107596_116107768_116107857_116107960_116108919_116109124_116110479
70569	chr11	+	1978	3	NNC	ENSMUSG00000020747.19	novel	5329	32	NA	NA	10123	2053	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	42	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGTCAGGCTAGGACTAG	NA	False	NA	58	True	NA	NA	NA	115689902	115692245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115690904_115691185_115691408_115691490
70571	chr5	-	1785	1	Antisense	novelGene_ENSMUSG00000105735.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGACATTATGAAAATAATC	2417	False	NA	NA	False	NA	NA	NA	112788306	112786521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_112786500_112788300
70572	chr6	-	998	2	Intergenic	novelGene_4214	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	16	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATTCTTCGTGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	100133332	100132172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_100133041_100133202
70574	chr7	+	1965	2	NNC	ENSMUSG00000002043.18	novel	955	4	NA	NA	-1034	539	intron_retention	FALSE	non_canonical	0	0	junction_1	0	17	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGCTTTCTGTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	19241285	19243380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_19242311_19242440
70576	chr11	+	2033	8	Antisense	novelGene_ENSMUSG00000080768.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	52	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAAGTCCTTCCCAGTCG	NA	False	NA	NA	False	NA	NA	NA	53842100	53871162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_53842186_53843830_53844004_53845511_53845739_53846815_53846923_53848802_53848926_53850027_53850201_53850990_53851262_53870288
70579	chr9	-	290	2	ISM	ENSMUSG00000037742.15	ENSMUST00000156988.2	745	3	151	396	-2	-396	5prime_fragment	FALSE	canonical	3	12130	junction_1	0	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTGACCATCATTGATG	8134	False	NA	-46	True	NA	NA	NA	78387972	78387592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78387703_78387792
70582	chr19	+	1038	7	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	14.8174071805952	20	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	NA	False	NA	NA	NA	6973556	6976414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976073_6976137_6976259
70584	chr5	-	715	2	Antisense	novelGene_ENSMUSG00000029642.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	403	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGGCGGAGCCGCAGCG	2460	False	NA	NA	False	NA	NA	NA	147015896	147014340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_147014502_147015342
70586	chr7	+	676	4	NNC	ENSMUSG00000006333.15	novel	813	5	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7063.05393501203	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1599	False	NA	NA	False	NA	NA	NA	3707326	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3707461_3707644_3707768_3708731_3708960_3709704
70587	chr10	-	1701	2	ISM	ENSMUSG00000036923.13	ENSMUST00000133371.8	3510	4	60949	149	60622	-149	3prime_fragment	FALSE	canonical	2	2	junction_1	0	8	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGAGATGACTCAGTGGTT	7195	False	NA	NA	False	NA	NA	NA	62500958	62494970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62495447_62499733
70588	chr7	-	1380	8	NIC	ENSMUSG00000057176.5	novel	2536	9	NA	NA	-56	-1	intron_retention	FALSE	canonical	3	22	junction_2	2.18529407725405	59	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCACGAGCACCTTCTGG	8656	False	NA	NA	False	NA	NA	NA	127187397	127182532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
70590	chr8	-	573	4	Intergenic	novelGene_1768	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	8	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCATATACATAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	118502980	118488247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_118488448_118501124_118501242_118502240_118502391_118502874
70591	chr1	-	957	1	Intergenic	novelGene_491	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCCCACCCCCACCTCCA	NA	False	NA	NA	False	NA	NA	NA	181662002	181661045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_181661000_181662000
70592	chr13	+	788	5	NNC	ENSMUSG00000078941.10	novel	1298	5	NA	NA	50	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	630.790971717256	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATACACATCTCTTTAATAG	NA	False	NA	NA	False	NA	NA	NA	100787937	100802865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800658_100802344
70594	chr7	+	835	5	FSM	ENSMUSG00000054612.5	ENSMUST00000081510.4	2894	5	-23	2082	-23	-2082	multi-exon	FALSE	canonical	3	172	junction_1	21.7887585695009	1243	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACGTGATGTGGCTGCCC	NA	False	NA	NA	False	NA	NA	NA	136496319	136729913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_136496417_136552996_136553134_136687677_136687839_136723217_136723358_136729613
70595	chr1	+	2519	2	Antisense	novelGene_ENSMUSG00000038776.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGATCCTGCTGAGTAAGC	NA	False	NA	NA	False	NA	NA	NA	180804544	180807183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_180806954_180807073
70597	chr8	-	613	1	NIC	ENSMUSG00000031921.18	novel	2666	10	NA	NA	2926	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	19	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATCAGCCTTACTTGTAC	NA	False	NA	NA	False	NA	NA	NA	107803581	107802968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_107803000_107803600
70598	chr8	-	857	1	ISM	ENSMUSG00000031921.18	ENSMUST00000116425.3	2471	7	20161	13	3489	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTTCTATACACCTTG	NA	False	NA	-80	True	NA	NA	NA	107803018	107802161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_107802200_107803000
70599	chr4	-	1325	8	FSM	ENSMUSG00000051435.12	ENSMUST00000036701.8	1366	8	30	11	30	-11	multi-exon	FALSE	canonical	2	6	junction_4	3.33197251134017	31	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATACATGAATGATAGTGT	3746	False	NA	NA	False	NA	NA	NA	141660370	141643610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047_141648274_141649554_141649729_141655690_141655796_141656840_141656949_141660103
70600	chr4	+	1421	9	Antisense	novelGene_ENSMUSG00000029032.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGCGTCCCGGGGCCGGCC	NA	False	NA	NA	False	NA	NA	NA	154366507	154384337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_154366538_154366972_154367102_154367215_154367368_154369439_154369602_154370069_154370126_154371373_154371546_154372424_154372471_154375392_154376010_154384280
70601	chrX	+	1520	7	NNC	ENSMUSG00000031382.15	novel	1445	7	NA	NA	3925	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.77169096878911	31	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGATTTTGATTTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	163224978	163242155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_163225297_163228724_163228805_163233450_163233559_163235894_163236046_163237383_163237519_163238792_163238985_163241619
70602	chr3	+	801	1	ISM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	30904	6	288	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAACCACAGGCTGGTTA	NA	False	NA	NA	False	NA	NA	NA	121251049	121251850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_121251000_121251800
70603	chr2	+	1828	15	FSM	ENSMUSG00000016024.10	ENSMUST00000016168.9	2525	15	158	539	39	-539	multi-exon	FALSE	canonical	1	2	junction_3	1.75691055374984	14	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACATCCCAGCTGAACCT	NA	False	NA	NA	False	NA	NA	NA	158148570	158174233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_158148714_158150600_158150716_158151520_158151650_158155392_158155549_158156072_158156137_158159456_158159521_158161591_158161684_158162183_158162361_158163974_158164035_158166428_158166597_158167626_158167695_158168147_158168191_158169436_158169501_158170265_158170343_158173825
70605	chr9	-	290	2	ISM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	23	732	23	-732	5prime_fragment	FALSE	canonical	3	181318	junction_1	0	35	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCGGGCTAAATGGATG	NA	False	NA	NA	False	NA	NA	NA	78275436	78275065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78275186_78275266
70608	chr11	-	750	2	Intergenic	novelGene_2533	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	44	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACCAAACCAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	116890555	116887545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_116888202_116890461
70609	chr6	-	1220	3	Genic_Genomic	ENSMUSG00000051695.7	novel	1830	1	NA	NA	202	-12	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTAAAAATGCTTCGTAT	NA	False	NA	NA	False	NA	NA	NA	86503101	86501485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_86502288_86502501_86502898_86503079
70610	chr10	-	852	3	Intergenic	novelGene_3452	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1	9	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTAATAAATGAGTCTAT	7852	False	NA	NA	False	NA	NA	NA	61867020	61862757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_61863387_61865695_61865873_61866974
70611	chr19	-	691	5	NNC	ENSMUSG00000060803.7	novel	821	7	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1881.81366970803	2	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGGTGTCTTTGGTGCT	NA	False	NA	NA	False	NA	NA	NA	4087923	4085409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4085662_4085823_4085932_4086687_4086824_4087276_4087411_4087862
70612	chr5	-	1865	1	Intergenic	novelGene_713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATAGCCCTTATTTGAAGC	4007	False	NA	NA	False	NA	NA	NA	43905864	43903999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_43904000_43905900
70614	chr17	-	958	5	FSM	ENSMUSG00000034647.16	ENSMUST00000129756.8	1403	5	80	365	13	-24	multi-exon	FALSE	canonical	2	19	junction_2	27.5170401751351	108	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTTAACTTTTAAGATAAA	NA	False	NA	NA	False	NA	NA	NA	66384004	66344157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
70615	chr7	+	412	3	Antisense	novelGene_ENSMUSG00000062040.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	2	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAGGACTGCAACAATGT	NA	False	NA	NA	False	NA	NA	NA	29577614	29601287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_29577831_29598827_29598887_29601150
70616	chr2	-	1462	1	Intergenic	novelGene_2688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAATGAATAAATGTATG	NA	False	NA	NA	False	NA	NA	NA	119181477	119180015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_119180000_119181500
70617	chr1	-	194	1	Intergenic	novelGene_369	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTACCCACATACGTA	5778	False	NA	NA	False	NA	NA	NA	55004557	55004363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_55004400_55004600
70618	chr13	+	716	1	NIC	ENSMUSG00000021697.13	novel	2563	11	NA	NA	3	-7391	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTACTGACTTCTCCCTC	2886	False	NA	NA	False	NA	NA	NA	108452904	108453620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_108452900_108453600
70619	chr15	+	1085	9	NNC	ENSMUSG00000052369.9	novel	1623	8	NA	NA	16	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.4257693689883	3	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGATCTGCACTGTCT	7737	False	NA	NA	False	NA	NA	NA	97862166	97868148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_97862218_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467_97867676_97867982
70621	SIRV6	-	753	2	Antisense	novelGene_SIRV6A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCATTGGTTCCCCAATAA	NA	False	NA	NA	False	NA	NA	NA	11330	10252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV6_-_10869_11193
70622	chr8	-	313	2	Genic_Genomic	ENSMUSG00000059775.6	novel	449	1	NA	NA	-6	-11	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	108166217	108165773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_108165883_108166013
70623	chr14	-	982	6	ISM	ENSMUSG00000021884.19	ENSMUST00000165955.8	1500	14	21709	-142	-4858	100	3prime_fragment	FALSE	canonical	3	47	junction_3	3.07245829914744	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACATTTGTTATAACTTT	NA	False	NA	NA	False	NA	NA	NA	31341126	31329825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928
70624	chr11	+	647	6	NIC	ENSMUSG00000020514.9	novel	722	7	NA	NA	6	1	combination_of_known_splicesites	FALSE	canonical	2	15	junction_5	502.315199849656	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTCATTGAATTATTG	1487	False	NA	NA	False	NA	NA	NA	58062492	58070392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58070103
70625	chr10	-	1678	9	Antisense	novelGene_ENSMUSG00000001155.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCACTCGGCCTGTTTGA	74	False	NA	NA	False	NA	NA	NA	76425378	76415844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_76416002_76417126_76417265_76417334_76417466_76419641_76420131_76420362_76420527_76422965_76423009_76423132_76423268_76423897_76423998_76425057
70628	chr14	+	1839	1	Intergenic	novelGene_586	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAGAGTGAGAAAAACGAG	NA	False	NA	NA	False	NA	NA	NA	62567567	62569406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_62567600_62569400
70629	chr11	+	1602	12	ISM	ENSMUSG00000020122.17	ENSMUST00000102884.10	2943	16	115048	482	-10899	-482	3prime_fragment	FALSE	canonical	1	2	junction_1	1.78144708566049	5	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTTACTTAAGTCTCAGC	1845	False	NA	NA	False	NA	NA	NA	16817250	16837441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_16817300_16818107_16818227_16819218_16819361_16820975_16821093_16821582_16821710_16821801_16821876_16822845_16822937_16824959_16825160_16828126_16828260_16831463_16831555_16833455_16833614_16837140
70631	chr3	+	937	1	Intergenic	novelGene_3145	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCTAAAACTCCTGACTC	530	False	NA	NA	False	NA	NA	NA	88215012	88215949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_88215000_88215900
70632	chr16	+	2159	1	Antisense	novelGene_ENSMUSG00000004071.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCCCGCTGCTCCGAGGA	NA	False	NA	NA	False	NA	NA	NA	4605583	4607742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_4605600_4607700
70634	chr4	+	1513	1	Intergenic	novelGene_1975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGAAGATTGTTCATCTT	5103	False	NA	NA	False	NA	NA	NA	132800392	132801905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_132800400_132801900
70635	chr15	-	1243	7	NIC	ENSMUSG00000023755.11	novel	1038	8	NA	NA	9	-6	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	91.2797896579522	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGACGTTTGTGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	98778962	98775664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98776179_98776333_98776416_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98778595
70636	chr12	-	672	1	FSM	ENSMUSG00000079036.11	ENSMUST00000185301.2	408	1	82	-346	0	346	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCTCTGAGGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	87490606	87489934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87489900_87490600
70637	chr7	-	490	3	FSM	ENSMUSG00000040564.15	ENSMUST00000108451.4	532	3	42	0	8	0	multi-exon	FALSE	canonical	3	1274	junction_1	0.5	6014	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	19426521	19423405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19423562_19425812_19425961_19426335
70639	chr9	-	1979	8	ISM	ENSMUSG00000032352.17	ENSMUST00000113421.10	2630	14	86682	120	-14922	-11	3prime_fragment	TRUE	canonical	3	32	junction_5	6.92525693916618	15	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCACCTATACCGTAA	NA	False	NA	NA	False	NA	NA	NA	77364695	77338381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_77339563_77341275_77341413_77342328_77342502_77349458_77349575_77358639_77358724_77359884_77360004_77362439_77362585_77364671
70640	chr7	-	674	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	121	119	62	8	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACTTAAGGAGTGATATT	6746	False	NA	NA	False	NA	NA	NA	118132458	118124403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
70641	chr19	-	1599	4	ISM	ENSMUSG00000024955.16	ENSMUST00000172975.3	1975	6	7102	3	7102	-2	3prime_fragment	FALSE	canonical	3	88	junction_3	7.03957069398096	40	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACACGGTGGTCGGTGAGT	NA	False	NA	NA	False	NA	NA	NA	6891317	6888347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6889379_6889722_6889993_6890083_6890252_6891187
70642	chr15	+	1908	1	FSM	ENSMUSG00000022556.12	ENSMUST00000228388.2	3133	1	8	1217	2	-1217	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTCCACATTCTTAC	7156	False	NA	NA	False	NA	NA	NA	76361656	76363564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76361700_76363600
70644	chr17	-	711	2	NNC	ENSMUSG00000079471.5	novel	804	2	NA	NA	45	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATTGGTGGTGGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	45912847	45911900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45912425_45912660
70646	chr7	-	1035	2	NNC	ENSMUSG00000045251.14	novel	1298	2	NA	NA	5	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	56	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACCTCCCCTCCCCAGT	6930	False	NA	NA	False	NA	NA	NA	127021194	127018152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_127018814_127020820
70647	chr4	-	1458	7	NIC	ENSMUSG00000028972.12	novel	1460	7	NA	NA	30	-4	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	7.39369100427294	3	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTGTGTTACTATTC	NA	False	NA	NA	False	NA	NA	NA	150282897	150271475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_150271966_150273545_150273702_150276931_150277090_150278164_150278235_150280512_150280606_150281774_150281924_150282555
70648	chr11	+	2178	12	ISM	ENSMUSG00000013483.15	ENSMUST00000053245.7	3958	22	16555	-5	7195	5	3prime_fragment	FALSE	canonical	1	1	junction_9	2.60641294306026	12	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTGTCTCGGTGCCTA	NA	False	NA	NA	False	NA	NA	NA	119222167	119236206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_119222206_119222354_119222444_119224372_119224434_119224623_119224817_119228517_119228645_119229060_119229299_119229697_119229762_119230400_119230513_119231816_119231991_119233968_119234091_119234720_119234837_119235362
70649	chr10	+	2452	2	Antisense	novelGene_ENSMUSG00000112143.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	76804317	76807867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_76804690_76805787
70650	chr4	+	622	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	0	-2	0	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	64	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	-5	True	NA	NA	False	NA	NA	NA	3938913	3943523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
70651	chr7	+	2629	18	Antisense	novelGene_ENSMUSG00000038886.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	45	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTTGGCGAAGAAGGAGA	NA	False	NA	NA	False	NA	NA	NA	80002690	80018002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_80002781_80002908_80003109_80006087_80006226_80007989_80008133_80008657_80008791_80009026_80009137_80009379_80009507_80010643_80010883_80012048_80012215_80012358_80012432_80012638_80012750_80012899_80013085_80013214_80013420_80013677_80013853_80016612_80016804_80017058_80017231_80017442_80017572_80017960
70652	chr11	-	1509	14	NNC	ENSMUSG00000017210.15	novel	2830	19	NA	NA	0	-2890	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.0599335995594	1	85	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTGAGTAGAGCTATGCC	NA	False	NA	NA	False	NA	NA	NA	98620244	98603361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_98603502_98603977_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607095_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
70656	chr16	+	944	6	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	-2	6	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	51.1921869038626	199	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAAGGTCCATGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	21613094	21627796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21625720_21625870_21627427
70657	chr3	-	2025	2	FSM	ENSMUSG00000044468.15	ENSMUST00000061455.9	5640	2	136	3479	6	-3479	multi-exon	FALSE	canonical	3	4	junction_1	0	13	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTAAAGTAGAATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	100396504	100378851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_100380782_100396409
70658	chr4	+	729	7	NNC	ENSMUSG00000057572.16	novel	3833	7	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	238.975882093198	509	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	129229828	129240826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129230008_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
70660	chr2	+	1209	1	Intergenic	novelGene_2561	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAGTGTATGCCCCATCC	457	False	NA	NA	False	NA	NA	NA	10381010	10382219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_10381000_10382200
70661	chr5	+	1124	1	Genic_Genomic	ENSMUSG00000036323.15	novel	NA	NA	NA	NA	1719	707	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCAGTGAGCTGTTTCTG	3452	False	NA	NA	False	NA	NA	NA	77130144	77131268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_77130100_77131300
70663	chr3	+	707	3	NNC	ENSMUSG00000039887.12	novel	2037	4	NA	NA	-14	308	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTACTCACAGGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	121085407	121155664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121085500_121092252_121092408_121155204
70664	chr3	-	2533	10	ISM	ENSMUSG00000037016.12	ENSMUST00000091137.6	12348	24	106013	20540	-7074	-18522	internal_fragment	FALSE	canonical	3	10	junction_6	3.62092683040007	2	37	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTATATTCCTGCTGTAG	4507	False	NA	NA	False	NA	NA	NA	53458763	53441898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_53442918_53443144_53443277_53444643_53444948_53446584_53446744_53448391_53448523_53451695_53451879_53452778_53452944_53455030_53455229_53457004_53457215_53458731
70665	chr8	+	445	1	Intergenic	novelGene_1786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACAAAACAGCCTTGAGT	NA	False	NA	NA	False	NA	NA	NA	125983847	125984292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_125983800_125984300
70670	chr14	-	996	4	FSM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	30	3572	-20	-6	multi-exon	FALSE	canonical	3	85	junction_3	10.6144555520604	352	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGCAATATACCATGGGA	NA	False	NA	NA	False	NA	NA	NA	4198530	4189264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_4189750_4191150_4191393_4192889_4193001_4198372
70671	chr12	-	879	6	FSM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	10	101	-3	21	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTTCTTTGTGACTGT	NA	False	NA	NA	False	NA	NA	NA	71183412	71170048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
70672	chr4	-	1055	1	Intergenic	novelGene_1818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTATCTCATTGTATATA	NA	False	NA	NA	False	NA	NA	NA	34822840	34821785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_34821800_34822800
70673	chr9	+	676	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	393	3	171	-3	multi-exon	FALSE	canonical	3	8868	junction_1	0	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGTTTGTGTGTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	108216645	108217539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108216758_108216975
70674	chr5	+	2202	14	NIC	ENSMUSG00000034573.15	novel	7915	48	NA	NA	-39945	164	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	13.2227166908465	7	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGCATATGTTGTAGGT	NA	False	NA	NA	False	NA	NA	NA	103637486	103689464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_103637660_103640088_103640177_103664193_103664290_103665353_103665436_103671432_103671656_103673619_103673695_103673799_103673981_103674861_103675016_103676629_103676769_103677513_103677667_103681084_103681268_103684579_103684743_103688837_103689253_103689387
70676	chr2	-	1287	1	Intergenic	novelGene_2747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTAAGCTTTGCCTATAG	NA	False	NA	NA	False	NA	NA	NA	155711603	155710316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_155710300_155711600
70677	chr1	+	606	2	ISM	ENSMUSG00000051185.10	ENSMUST00000059975.8	2112	3	11503	861	11498	-861	3prime_fragment	FALSE	canonical	3	133	junction_1	0	34	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATTGTCTGTGCTAAAG	NA	False	NA	NA	False	NA	NA	NA	95252850	95262148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_95252969_95261660
70678	chr7	+	1950	4	NNC	ENSMUSG00000047603.10	novel	3373	4	NA	NA	-3	-1322	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	21.2289111041209	3	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCACCCCAGAAAAGCCC	NA	False	NA	NA	False	NA	NA	NA	23833628	23839047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_23833913_23834682_23834741_23836470_23836598_23837566
70679	chr14	-	1559	6	ISM	ENSMUSG00000035953.15	ENSMUST00000049312.14	1594	7	344	0	288	0	3prime_fragment	FALSE	canonical	3	781	junction_5	33.7579620237952	208	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	NA	False	NA	NA	NA	51167969	51164671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590
70680	chr14	-	1224	1	NIC	ENSMUSG00000021910.16	novel	4990	17	NA	NA	938	-588	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCCTTTAATGCAAGCTC	9876	False	NA	NA	False	NA	NA	NA	30912108	30910884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_30910900_30912100
70681	chr4	-	717	4	FSM	ENSMUSG00000057236.11	ENSMUST00000140291.2	722	4	7	-2	7	2	multi-exon	FALSE	canonical	3	143	junction_1	460.816666365269	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	3225	False	NA	-40	True	NA	NA	NA	129228430	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289
70682	chr5	+	332	4	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-22	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	10371.0459774637	3033	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115698860_115701429
70684	chr2	+	841	6	NNC	ENSMUSG00000035437.16	novel	4847	26	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	116.208433428904	7	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTTATGTTTGCATAT	NA	False	NA	NA	False	NA	NA	NA	37342251	37456466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365336_37456344
70685	chr8	-	1560	13	NIC	ENSMUSG00000032815.17	novel	4485	43	NA	NA	-27	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	45.9464513198668	1	60	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTGTCTGGCCTTATT	NA	False	NA	NA	False	NA	NA	NA	124008053	123995040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001206_124001313_124001870_124002044_124004998_124005084_124007930
70686	chr7	-	717	5	NIC	ENSMUSG00000003873.12	novel	867	6	NA	NA	26	-5	combination_of_known_splicesites	FALSE	canonical	3	105	junction_4	1322.49735349452	35	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTATGGTCCCTTGTCC	10008	False	NA	NA	False	NA	NA	NA	45116229	45111125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45116165
70687	chr1	-	673	3	FSM	ENSMUSG00000025952.16	ENSMUST00000027089.15	783	3	104	6	-64	0	multi-exon	FALSE	canonical	3	19	junction_1	0	136	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGACTTCTGTTATTCTT	792	False	NA	NA	False	NA	NA	NA	65112744	65110689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65111031_65112320_65112564_65112655
70688	chr2	-	1273	9	NNC	ENSMUSG00000044320.15	novel	969	7	NA	NA	-3889	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	13.3129401335693	42	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAGTAAAAGCCACTCTA	NA	False	NA	NA	False	NA	NA	NA	30697562	30685589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30685818_30686120_30686296_30686412_30686579_30687879_30687993_30690735_30690829_30690925_30691014_30695078_30695166_30697165_30697468_30697541
70689	chr1	-	1273	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	101	0	18	0	multi-exon	FALSE	canonical	3	209	junction_3	62.7917191992702	696	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	NA	False	NA	NA	NA	170713008	170701756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
70691	chr2	-	1480	13	NIC	ENSMUSG00000038860.16	novel	3551	30	NA	NA	-33	-6467	combination_of_known_junctions	FALSE	canonical	2	2	junction_12	32.355662392986	14	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGGTGTGTCCCACCT	NA	False	NA	NA	False	NA	NA	NA	33021699	32915787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32916201_32921081_32921186_32924042_32924142_32924721_32924798_32931454_32931482_32935499_32935564_32936595_32936661_32942107_32942227_32944169_32944270_32954015_32954091_32975886_32975957_32994864_32995036_33021602
70692	chr2	-	1607	9	NIC	ENSMUSG00000033486.15	novel	2247	13	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	6.51800391224184	27	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTGGTAAGTTCAAGT	NA	False	NA	NA	False	NA	NA	NA	121244266	121224835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_121224969_121227433_121227602_121227941_121228370_121229926_121229951_121230217_121230318_121240618_121240688_121240857_121241032_121242630_121242772_121243896
70694	chr13	-	743	7	NNC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	0	-711	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	74.8301781072019	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAAAGCTGGATCTTCTC	NA	False	NA	NA	False	NA	NA	NA	49806243	49618209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_49618263_49619154_49619235_49780730_49780811_49794713_49794791_49801041_49801131_49803596_49803776_49806058
70695	chr2	+	1092	12	ISM	ENSMUSG00000017299.14	ENSMUST00000017443.14	1664	13	732	388	684	-388	3prime_fragment	FALSE	canonical	3	563	junction_9	66.4287351942225	103	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGGTAGTGAGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	164588634	164610139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
70700	chr11	-	579	3	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	301.5	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7234	False	NA	NA	False	NA	NA	NA	68864671	68863309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_68863568_68864266_68864384_68864467
70701	chr7	+	1559	1	Genic_Genomic	ENSMUSG00000057706.8	novel	NA	NA	NA	NA	2669	45	mono-exon	FALSE	NA	NA	NA	NA	NA	20	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGAAAAATCACTGTTG	NA	False	NA	NA	False	NA	NA	NA	82519209	82520768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_82519200_82520800
70702	chr3	+	709	5	NNC	ENSMUSG00000027500.11	novel	2073	5	NA	NA	-35	-1085	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	798.897678053955	12	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTGCAGAATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	8574610	8625550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_8574691_8606900_8606997_8610632_8610806_8619908_8620044_8625325
70703	chr4	-	1071	7	Antisense	novelGene_ENSMUSG00000028423.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	62	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCGAGCATTACTTCCAT	NA	False	NA	NA	False	NA	NA	NA	41012570	40994113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40994176_40996812_40996925_41003015_41003088_41004322_41004426_41004820_41004954_41009193_41009268_41012055
70704	chr5	+	652	2	NNC	ENSMUSG00000087244.2	novel	944	6	NA	NA	1318	249	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	0	53	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	2231	False	NA	NA	False	NA	NA	NA	137027557	137028397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_137027818_137028005
70707	chr5	+	1522	7	ISM	ENSMUSG00000035851.15	ENSMUST00000038384.8	2960	17	23388	4	-1366	-1	3prime_fragment	FALSE	canonical	3	72	junction_3	78.8852894327509	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTAACTTGCTGTATTTCC	NA	False	NA	NA	False	NA	NA	NA	86975810	86984512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_86975981_86978412_86978496_86979522_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
70710	chr17	-	798	3	NNC	ENSMUSG00000024327.17	novel	2433	6	NA	NA	1446	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGCAGCCTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	34248556	34247247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34247808_34247877_34248039_34248479
70711	chr10	+	622	4	NNC	ENSMUSG00000075706.12	novel	959	7	NA	NA	108	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4312.49365861047	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	763	False	NA	NA	False	NA	NA	NA	79889429	79892273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79889550_79890347_79890443_79890533_79890679_79892011
70712	chr13	+	393	1	Intergenic	novelGene_1439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTCTCTCGTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	66616054	66616447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66616100_66616400
70714	chr2	+	1170	1	Intergenic	novelGene_2766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTGATAATGTTTAGTAG	NA	False	NA	NA	False	NA	NA	NA	162897243	162898413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_162897200_162898400
70715	chr9	-	734	3	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	2	1	combination_of_known_splicesites	FALSE	canonical	3	156	junction_2	185.5	1238	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGAAATCAATAGAAATT	NA	False	NA	NA	False	NA	NA	NA	88601632	88570657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88571039_88597540_88597803_88601541
70716	chr2	+	1363	2	FSM	ENSMUSG00000068264.12	ENSMUST00000134086.2	868	2	17	-512	-10	0	multi-exon	FALSE	canonical	3	35	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	NA	False	NA	NA	NA	131052306	131055434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131052602_131054366
70717	SIRV3	+	437	3	FSM	SIRV3A	SIRV305	436	3	-1	0	-1	0	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	257	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4002	6718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_4081_4568_4780_6570
70718	chr7	+	958	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106518.9	875	4	-64	-19	-64	-1	multi-exon	FALSE	canonical	3	29	junction_1	16.3095064303001	150	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTGTTGTTTTGTTGA	NA	False	NA	NA	False	NA	NA	NA	119495019	119515975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_119495114_119509026_119509186_119513395_119513489_119515363
70720	chr7	+	685	7	FSM	ENSMUSG00000060791.16	ENSMUST00000108292.9	657	7	-28	0	-28	0	multi-exon	FALSE	canonical	3	339	junction_1	45.6070170039655	1379	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATGGTATCTGCAAAAT	1787	False	NA	NA	False	NA	NA	NA	28136843	28145971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28137000_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
70721	chr7	-	897	4	NIC	ENSMUSG00000070371.12	novel	1052	5	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	36.3409777890836	137	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACGTGGCTTTGTGGCAT	NA	False	NA	NA	False	NA	NA	NA	127534680	127531811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_127532287_127532542_127532665_127533561_127533800_127534618
70722	chrM	+	588	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	366	1	366	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	13	False	NA	-15	True	NA	NA	NA	435	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_400_1000
70725	chr18	-	1817	2	Antisense	novelGene_ENSMUSG00000024542.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTCTGGTTAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	68013946	68011616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_68012423_68012935
70726	chr4	-	1925	1	Intergenic	novelGene_1813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTCTTTTTGAAGTTG	NA	False	NA	NA	False	NA	NA	NA	32014047	32012122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_32012100_32014000
70727	chrX	+	1519	2	FSM	ENSMUSG00000073069.3	ENSMUST00000201779.2	1551	2	9	23	9	-23	multi-exon	FALSE	canonical	1	4	junction_1	0	21	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTTGATGACTTTACTC	NA	False	NA	NA	False	NA	NA	NA	90375304	90376943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_90375345_90375464
70730	chr1	+	1250	1	FSM	ENSMUSG00000103509.2	ENSMUST00000194854.2	4028	1	333	2445	333	-2445	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCACAACAAATAAGCTTGAA	NA	False	NA	NA	False	NA	NA	NA	7218666	7219916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_7218700_7219900
70731	chr16	+	765	5	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	4	-4	combination_of_known_splicesites	FALSE	canonical	3	8	junction_4	57.7164404654341	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCATGAAATTCTGGAAAGA	NA	False	NA	NA	False	NA	NA	NA	21613100	21627772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21620030_21620107_21627427
70732	chr7	-	1076	8	NIC	ENSMUSG00000036845.13	novel	998	9	NA	NA	0	1	intron_retention	FALSE	canonical	3	235	junction_7	16.9428812334206	706	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAAATCTCAAGTGCATT	4892	False	NA	NA	False	NA	NA	NA	30259064	30254867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30255034_30255112_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
70733	chr8	-	1476	7	ISM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	3270	1329	-239	-515	internal_fragment	FALSE	canonical	3	217	junction_4	12.8279209365959	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTAGGGCCCCAGAAT	NA	False	NA	NA	False	NA	NA	NA	84993706	84986258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464
70734	chr3	+	843	5	ISM	ENSMUSG00000028032.14	ENSMUST00000029666.14	2600	12	77	58410	-20	2061	5prime_fragment	FALSE	canonical	3	27	junction_4	6.64736790015417	14	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCAGTAACTTCCTGTA	NA	False	NA	NA	False	NA	NA	NA	131270605	131291022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288987_131290808
70737	chr4	-	627	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	-159	0	-159	0	multi-exon	FALSE	canonical	3	93	junction_1	12.5	479	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	376	False	NA	NA	False	NA	NA	NA	141546672	141542272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141542367_141545175_141545329_141546292
70738	chr2	+	1333	3	Antisense	novelGene_ENSMUSG00000013523.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	174	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGCTCTGATTGGGTCAG	4221	False	NA	NA	False	NA	NA	NA	170189071	170191740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_170190072_170191104_170191384_170191686
70739	chr11	+	1593	9	FSM	ENSMUSG00000020732.14	ENSMUST00000021076.6	2210	9	38	579	-8	-579	multi-exon	TRUE	canonical	1	1	junction_2	1.36358901432946	10	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCCCTCTCTCTCTTTA	NA	False	NA	NA	False	NA	NA	NA	115045020	115052483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115045118_115047752_115047864_115048776_115048819_115049330_115049398_115049484_115049538_115050501_115050568_115051124_115051182_115051263_115051341_115051460
70741	chr17	-	1198	6	NNC	ENSMUSG00000024114.16	novel	1128	7	NA	NA	-21	-3	intron_retention	FALSE	canonical	0	0	junction_2	11.4891252930761	8	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTGGCACTCTGCAGCA	NA	False	NA	NA	False	NA	NA	NA	24063167	24055761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24056123_24056464_24056623_24061259_24061500_24062415_24062585_24062812_24062846_24062930
70742	chr8	+	2318	1	Intergenic	novelGene_1644	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAGAAATGAGCACTGT	NA	False	NA	NA	False	NA	NA	NA	48981458	48983776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_48981500_48983800
70743	chr2	+	756	1	Intergenic	novelGene_2640	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTGTTTATAGTAGAC	NA	False	NA	NA	False	NA	NA	NA	65236847	65237603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_65236800_65237600
70744	chr10	-	775	1	Antisense	novelGene_ENSMUSG00000110841.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACAGCAGTCTTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	45752171	45751396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_45751400_45752200
70745	chr3	+	1133	1	FSM	ENSMUSG00000107741.3	ENSMUST00000203124.2	1263	1	134	-4	-48	4	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTCCTGTGTTATGGT	606	False	NA	NA	False	NA	NA	NA	40801388	40802521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_40801400_40802500
70747	chr11	-	1742	15	ISM	ENSMUSG00000033389.17	ENSMUST00000093002.12	3982	21	87709	19614	-15361	-19613	internal_fragment	FALSE	canonical	3	13	junction_12	3.68394198806504	6	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGGGAATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	64966021	64912479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_64912948_64913951_64914044_64915016_64915131_64917629_64917711_64922476_64922559_64922909_64923022_64929441_64929570_64929976_64930059_64932267_64932337_64943924_64944043_64948122_64948200_64950649_64950762_64957905_64957983_64965262_64965368_64965996
70749	chr5	-	1593	2	FSM	ENSMUSG00000051022.8	ENSMUST00000053116.7	1684	2	22	69	-15	-69	multi-exon	FALSE	canonical	3	8	junction_1	0	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCTTTGTTTTCACCTC	NA	False	NA	NA	False	NA	NA	NA	39801955	39771350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_39772748_39801759
70750	chr13	-	1108	2	Intergenic	novelGene_1320	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	11	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCCTTGAAATAAACACA	NA	False	NA	NA	False	NA	NA	NA	20229063	20218874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_20219904_20228984
70751	chr7	-	1337	2	Intergenic	novelGene_2978	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	10	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGCAAATGTTTCACG	NA	False	NA	NA	False	NA	NA	NA	67899312	67877420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_67878660_67899214
70752	chr7	-	646	6	FSM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	39	0	1	0	multi-exon	FALSE	canonical	3	247	junction_5	86.8506764510214	1326	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1510	False	NA	NA	False	NA	NA	NA	139682315	139679382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
70753	chr1	+	1174	1	Intergenic	novelGene_357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCGAATGCCCTCAATC	6090	False	NA	NA	False	NA	NA	NA	36138108	36139282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_36138100_36139300
70754	chrX	-	1160	2	Antisense	novelGene_ENSMUSG00000031104.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCTGCCGGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	47619108	47608160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_47608742_47618529
70755	chr14	+	1168	3	Intergenic	novelGene_602	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1	16	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACATGTGTAAGGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	69970815	69976421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_69971118_69972044_69972176_69975686
70758	chr16	-	1055	5	Antisense	novelGene_ENSMUSG00000022792.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	109	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGCGCGCGTGGTTGGCC	NA	False	NA	NA	False	NA	NA	NA	16127486	16121307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_16121612_16122399_16122566_16124359_16124481_16125071_16125244_16127194
70759	chr17	-	1489	5	FSM	ENSMUSG00000045409.17	ENSMUST00000113704.10	1465	5	-24	0	-24	0	multi-exon	FALSE	canonical	3	20	junction_1	19.421315609402	29	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCATTGTGTTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	36582299	36573496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36574130_36574620_36574852_36578016_36578113_36579500_36579959_36582228
70762	chr8	-	1434	7	FSM	ENSMUSG00000031448.13	ENSMUST00000033825.11	1372	7	-62	0	-62	0	multi-exon	TRUE	canonical	1	1	junction_2	0.942809041582063	13	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTCCTCACCTTCTCA	2436	False	NA	NA	False	NA	NA	NA	13304224	13285654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_13285989_13292251_13292385_13292518_13292647_13295468_13295610_13296041_13296168_13298552_13298718_13303817
70763	chr4	-	1635	3	FSM	ENSMUSG00000073705.11	ENSMUST00000105695.2	544	3	-5	-1086	-5	1086	multi-exon	FALSE	canonical	3	344	junction_1	55.5	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTTAATACCAAACGT	NA	False	NA	NA	False	NA	NA	NA	149222039	149214725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_149216130_149216715_149216840_149221932
70764	chr4	-	1365	8	NNC	ENSMUSG00000028842.16	novel	625	4	NA	NA	33	-3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	12.2690917449051	26	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATATCATTGTCCTTTCA	2412	False	NA	NA	False	NA	NA	NA	126323301	126269473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126269734_126270699_126270835_126286263_126286354_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
70765	chr12	+	1174	1	ISM	ENSMUSG00000021277.17	ENSMUST00000117269.8	6972	10	99608	2	17495	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	23	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCTCTCTGGCTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	111232411	111233585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_111232400_111233600
70766	chr2	-	2656	1	Intergenic	novelGene_2565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGAACCCAAACTGGTG	NA	False	NA	NA	False	NA	NA	NA	12423932	12421276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_12421300_12423900
70768	chr11	+	2363	7	FSM	ENSMUSG00000040978.5	ENSMUST00000043285.5	2400	7	6	31	6	-31	multi-exon	FALSE	canonical	0	0	junction_1	1.25830573921179	7	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTATTCAATAAAAATAATA	NA	False	NA	NA	False	NA	NA	NA	8998599	9019325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_8999201_9002693_9002880_9004209_9004319_9006421_9006579_9009910_9010009_9011165_9011387_9018334
70770	chr10	-	1013	5	ISM	ENSMUSG00000043822.19	ENSMUST00000128845.8	4104	8	3750	1121	-2284	-101	3prime_fragment	FALSE	canonical	2	3	junction_2	1.4790199457749	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAGGAGCTTCAAGATC	NA	False	NA	NA	False	NA	NA	NA	80178203	80176775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_80177291_80177422_80177495_80177576_80177776_80177892_80178057_80178140
70771	chr14	+	2561	3	Intergenic	novelGene_534	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCTGCAGAAGGATTCG	NA	False	NA	NA	False	NA	NA	NA	27284318	27298376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_27284455_27289924_27292073_27298099
70772	chr7	-	676	1	FSM	ENSMUSG00000066175.3	ENSMUST00000084587.2	348	1	-14	-314	10	314	mono-exon	FALSE	NA	NA	NA	NA	NA	66	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAGCTACATCTTTGGA	NA	False	NA	NA	False	NA	NA	NA	126248756	126248080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126248100_126248800
70773	chr15	+	758	7	FSM	ENSMUSG00000050310.10	ENSMUST00000226201.2	2633	7	0	1875	0	-1875	multi-exon	FALSE	canonical	3	76	junction_1	4.31083905212585	25	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATTATGTTGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	6737861	6786221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941
70774	chr15	-	1266	3	Antisense	novelGene_ENSMUSG00000115093.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	1.5	14	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAACATCTGGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	6074138	6054177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_6055131_6073729_6073988_6074083
70775	chr16	+	1269	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	8	4	5	-4	multi-exon	FALSE	canonical	3	86	junction_1	45.5	188	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATACCTGTCTCAATTAG	NA	False	NA	NA	False	NA	NA	NA	18655335	18658906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18655370_18655455_18655624_18657839
70776	chr6	-	996	5	FSM	ENSMUSG00000030008.10	ENSMUST00000126805.8	953	5	70	-113	45	-15	multi-exon	FALSE	canonical	3	68	junction_4	38.4991883031318	175	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAAACAAAGCTCACCAGG	NA	False	NA	NA	False	NA	NA	NA	85428882	85423806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428738
70778	chr17	+	780	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	34	9	-8	-9	multi-exon	FALSE	canonical	3	1134	junction_3	173.829418300432	3163	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGAAATCTGGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	26895377	26918612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
70779	chr15	-	851	5	NNC	ENSMUSG00000003360.16	novel	3187	17	NA	NA	15349	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.871965661856	1	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCCCGAGCTCCATT	NA	False	NA	NA	False	NA	NA	NA	98545390	98543011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98543395_98543746_98543899_98544224_98544400_98545043_98545149_98545354
70780	chr14	+	915	5	FSM	ENSMUSG00000040726.11	ENSMUST00000224331.2	983	5	72	-4	72	0	multi-exon	FALSE	canonical	2	3	junction_1	69.4383719567215	515	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGTATTTTAATATACTTT	NA	False	NA	NA	False	NA	NA	NA	26716444	26724286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26716480_26722579_26722834_26723328_26723529_26723775_26723878_26723962
70783	chr16	-	1951	3	Antisense	novelGene_ENSMUSG00000009569.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCGGATCTCGCGAGAC	NA	False	NA	NA	False	NA	NA	NA	13146092	13074375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_13074417_13082940_13083002_13144243
70785	chr10	+	677	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	28	junction_1	6.5	90	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGACAGTGGTGGCACAC	NA	False	NA	NA	False	NA	NA	NA	61767341	61768384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_61767485_61767595_61767722_61767976
70787	chr11	-	849	5	NNC	ENSMUSG00000014243.6	novel	732	5	NA	NA	2	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	158.177906168972	25	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTGTATCTGCAATCAG	NA	False	NA	NA	False	NA	NA	NA	62172199	62158065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62158433_62159529_62159635_62164537_62164650_62166202_62166323_62172054
70788	chrX	-	920	1	ISM	ENSMUSG00000036916.14	ENSMUST00000076635.13	4355	19	49588	1	1159	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTGCATCATCTAATAC	NA	False	NA	NA	False	NA	NA	NA	47631422	47630502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_47630500_47631400
70789	chr9	-	1074	3	ISM	ENSMUSG00000023192.13	ENSMUST00000201681.2	2111	7	8597	-351	618	351	3prime_fragment	FALSE	canonical	2	2	junction_2	2	35	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTTTTGTTAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	106524684	106521732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_106522291_106522495_106522677_106524349
70790	chr17	-	713	5	NIC	ENSMUSG00000024371.15	novel	535	4	NA	NA	-163	-26	combination_of_known_junctions	FALSE	canonical	2	2	junction_2	4	37	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTGTTTTGCAAATAAAAG	4610	False	NA	NA	False	NA	NA	NA	35117404	35112354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35112451_35112586_35112677_35113870_35113912_35114382_35114544_35117079
70791	chr5	-	1032	9	Antisense	novelGene_ENSMUSG00000034573.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	3	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGACTGCCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	103730726	103715970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_103716049_103717293_103717467_103717563_103717773_103720953_103721023_103722943_103723005_103726733_103726830_103727560_103727696_103728529_103728617_103730602
70794	chr8	+	1132	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	-15	-2	-15	2	multi-exon	FALSE	canonical	2	12	junction_1	0	80	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACATGGTGGTGTGTCTTT	3313	False	NA	NA	False	NA	NA	NA	123899568	123905506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123899783_123904588
70795	chr17	-	477	2	ISM	ENSMUSG00000086930.2	ENSMUST00000136531.2	978	3	1198	49	31	20	3prime_fragment	FALSE	canonical	2	9	junction_1	0	1	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGGGGTTTTCCTATGC	NA	False	NA	NA	False	NA	NA	NA	48011723	48010944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_48011368_48011669
70796	chr5	-	803	3	NIC	ENSMUSG00000035325.17	novel	1195	7	NA	NA	-1577	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	398.5	1	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAACCCCATCTTATACA	NA	False	NA	NA	False	NA	NA	NA	100513706	100509523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511686_100511807_100513589
70797	chr1	-	1425	2	FSM	ENSMUSG00000103156.2	ENSMUST00000193209.2	600	2	93	-918	93	918	multi-exon	FALSE	canonical	1	1	junction_1	0	21	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTTTTCTAAGTAGCTTT	NA	False	NA	NA	False	NA	NA	NA	180596128	180590143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180591486_180596045
70798	chr8	-	1565	5	NNC	ENSMUSG00000033658.17	novel	6612	12	NA	NA	89	-48	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	78.7114985246755	1	82	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTAAGACTTGCTCGTC	NA	False	NA	NA	False	NA	NA	NA	111754307	111729867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_111731178_111747653_111747728_111749032_111749087_111750597_111750647_111754229
70799	chr5	-	1744	9	NIC	ENSMUSG00000029015.10	novel	2768	18	NA	NA	-3057	-1953	intron_retention	FALSE	canonical	0	0	junction_1	0.707106781186548	8	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAATCACTGTGCAGCC	NA	False	NA	NA	False	NA	NA	NA	22028572	22018099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_22019053_22019894_22020003_22020665_22020759_22021936_22022007_22024679_22024787_22025310_22025407_22026026_22026105_22026992_22027107_22028447
70800	chr4	-	779	7	NNC	ENSMUSG00000028447.12	novel	973	7	NA	NA	2	-149	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	342.260621943766	18	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTGGCCTGCTGA	-14	True	NA	NA	False	NA	NA	NA	41723168	41714946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717418_41719856_41719924_41720782_41720868_41723034
70801	chrX	+	1046	1	FSM	ENSMUSG00000048155.5	ENSMUST00000059808.5	1052	1	0	6	0	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	52	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAATGTTGTTTCTGCTA	NA	False	NA	NA	False	NA	NA	NA	135828073	135829119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_135828100_135829100
70803	chr11	-	152	1	Intergenic	novelGene_2424	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCGACCCCGAGGCTTG	NA	False	NA	NA	False	NA	NA	NA	82718749	82718597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_82718600_82718700
70807	chr16	-	1965	3	Antisense	novelGene_ENSMUSG00000009569.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTACCACCGGATCTCG	NA	False	NA	NA	False	NA	NA	NA	13146109	13074381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_13074420_13082940_13083002_13144243
70810	chr1	+	2409	1	ISM	ENSMUSG00000035131.15	ENSMUST00000125331.2	3075	3	17408	0	17408	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	83	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTATTTATTATTGCAT	NA	False	NA	NA	False	NA	NA	NA	146390883	146393292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_146390900_146393300
70811	chr9	-	1164	4	NNC	ENSMUSG00000079427.11	novel	725	4	NA	NA	1398	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	229.727858321295	143	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATTTAGAAATCAATAGAA	NA	False	NA	NA	False	NA	NA	NA	88600225	88570660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88571039_88597540_88597803_88598546_88598617_88599771
70812	chr16	-	1056	10	FSM	ENSMUSG00000022889.8	ENSMUST00000116584.2	2294	10	498	740	-14	-740	multi-exon	FALSE	canonical	3	703	junction_1	110.666443551761	93	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTAGAGTAAATTAAAATAA	NA	False	NA	NA	False	NA	NA	NA	84532132	84515203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_84515273_84517157_84517206_84520725_84520880_84522012_84522079_84524371_84524485_84527306_84527375_84527715_84527816_84529229_84529370_84531294_84531502_84532041
70813	chr19	+	621	1	Intergenic	novelGene_1279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTCCTTCCCCACACC	NA	False	NA	NA	False	NA	NA	NA	43434831	43435452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_43434800_43435500
70814	chr6	-	686	4	Intergenic	novelGene_4250	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	284	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTTGTTCAGATCCTAAG	NA	False	NA	NA	False	NA	NA	NA	125435802	125409627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_125409772_125409996_125410198_125434607_125434716_125435569
70815	chr10	+	1027	5	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	23	499	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.301564152389	7	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAATGCTGAATGTTAGT	NA	False	NA	NA	False	NA	NA	NA	79518051	79521701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79518069_79518234_79518425_79520651_79520739_79520838_79520937_79521066
70816	chr8	+	1090	7	NIC	ENSMUSG00000031860.18	novel	1560	8	NA	NA	21	-11	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	12.3659478676997	64	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGTTTGCATTCCAGTGT	2293	False	NA	NA	False	NA	NA	NA	70285360	70324931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70285502_70311729_70311804_70317473_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
70817	chr2	+	1163	1	Intergenic	novelGene_2600	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCCCCAACACCCCCCA	NA	False	NA	NA	False	NA	NA	NA	31070766	31071929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_31070800_31071900
70818	chr1	-	802	7	NNC	ENSMUSG00000060715.10	novel	646	9	NA	NA	-3	184	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.3168032782055	256	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGGTGCCCTTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	53226770	53197551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_53197948_53209506_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
70822	chr5	+	2657	11	ISM	ENSMUSG00000054520.16	ENSMUST00000179943.3	2935	13	3066	12	1209	1	3prime_fragment	FALSE	canonical	0	0	junction_3	1.64012194668567	5	39	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTTATGCATATGAGT	NA	False	NA	NA	False	NA	NA	NA	34710097	34720970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_34710184_34712800_34712919_34713285_34713357_34714234_34714324_34714638_34714708_34716344_34716994_34717687_34717797_34718032_34718089_34718369_34718452_34718946_34719007_34719702
70823	chr9	+	2730	1	Intergenic	novelGene_1026	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAACTACAATAGAAAATAA	NA	False	NA	NA	False	NA	NA	NA	46116130	46118860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_46116100_46118900
70824	chr13	-	958	1	Intergenic	novelGene_1341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAACTAATTTACACAAAC	NA	False	NA	NA	False	NA	NA	NA	35938111	35937153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_35937200_35938100
70825	chr17	+	983	1	ISM	ENSMUSG00000023266.12	ENSMUST00000113296.8	2144	7	8103	3	1236	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	76	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCAGTGAGTGCTCTCG	NA	False	NA	NA	False	NA	NA	NA	48014225	48015208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_48014200_48015200
70826	chr3	+	2286	1	ISM	ENSMUSG00000027500.11	ENSMUST00000191847.2	3413	3	36575	398	-14176	-398	mono-exon	FALSE	NA	NA	NA	NA	NA	2	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTACCATCCCAAAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	8611149	8613435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_8611100_8613400
70827	chr3	-	1139	7	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	-2	-148	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	87.8692210048547	1	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCCCAGCTCGGCTG	NA	False	NA	NA	False	NA	NA	NA	96634794	96618986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96633149_96633316_96634664
70828	chr10	-	1024	6	FSM	ENSMUSG00000025436.13	ENSMUST00000168520.3	1043	6	17	2	17	-2	multi-exon	FALSE	canonical	3	157	junction_1	12.3515181253156	96	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATACTTATTTTTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	126737200	126723119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_126723564_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
70829	chr16	+	2546	1	ISM	ENSMUSG00000022514.15	ENSMUST00000023156.13	4520	11	133430	12	-7247	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTTTGAATTTTATTT	NA	False	NA	NA	False	NA	NA	NA	26533936	26536482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_26533900_26536500
70830	chr11	-	987	12	NNC	ENSMUSG00000020599.14	novel	2313	17	NA	NA	8492	7966	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	9.52855647145737	58	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCTGGTTTGTTTGATT	NA	False	NA	NA	False	NA	NA	NA	109180400	109138861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_109139004_109139804_109139867_109140852_109140883_109150661_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180235
70831	chrX	+	985	1	NIC	ENSMUSG00000045103.20	novel	1792	2	NA	NA	6	-6285	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATGGGGTTAATTGTCC	NA	False	NA	NA	False	NA	NA	NA	84091933	84092918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_84091900_84092900
70832	chr9	-	1273	3	NNC	ENSMUSG00000079355.6	novel	2389	3	NA	NA	50	-648	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	10	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAGCAAACGCATGGATG	NA	False	NA	NA	False	NA	NA	NA	103980168	103976118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103976955_103979477_103979744_103979997
70835	chr4	-	953	3	Antisense	novelGene_ENSMUSG00000047613.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGCGCGCGCGGCGTCTG	NA	False	NA	NA	False	NA	NA	NA	154046369	154041711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_154041778_154044985_154045448_154045944
70836	chr14	-	944	5	Fusion	ENSMUSG00000115691.2_ENSMUSG00000090459.2	novel	391	2	NA	NA	10328	16	multi-exon	FALSE	canonical	0	0	junction_4	18.7932833746528	10	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTTTTTCTTCTTCATT	NA	False	NA	NA	False	NA	NA	NA	32029614	32014864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_32015223_32016885_32016987_32027207_32027353_32029146_32029250_32029377
70837	chr8	-	2108	1	NIC	ENSMUSG00000065954.12	novel	1661	9	NA	NA	-13595	3501	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGAACCCAAAGCTGG	NA	False	NA	NA	False	NA	NA	NA	25671144	25669036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_25669000_25671100
70838	chr12	+	1690	1	Intergenic	novelGene_4481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTCCCACCGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	110794748	110796438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_110794700_110796400
70839	chr6	-	1118	6	FSM	ENSMUSG00000025889.14	ENSMUST00000163779.8	1188	6	60	10	60	-6	multi-exon	FALSE	canonical	2	3	junction_5	6.34350061086148	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCAAAATCTTTCCTGG	6783	False	NA	NA	False	NA	NA	NA	60806779	60708568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60806654
70840	chr15	-	1529	1	Intergenic	novelGene_3281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGGAGAGGCATAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	39477659	39476130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_39476100_39477700
70842	chr8	-	423	1	NIC	ENSMUSG00000087502.2	novel	963	2	NA	NA	53	-12779	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTTGAGGTGTAGTCCC	NA	False	NA	NA	False	NA	NA	NA	72914646	72914223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_72914200_72914600
70843	chr17	-	485	3	ISM	ENSMUSG00000048826.8	ENSMUST00000053218.7	3250	4	4840	2160	4840	611	3prime_fragment	FALSE	canonical	3	62	junction_2	0.5	2	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGACCCCACGTACCAGC	NA	False	NA	NA	False	NA	NA	NA	14419516	14417473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_14417574_14418078_14418355_14419407
70844	chr15	-	1453	9	Antisense	novelGene_ENSMUSG00000022580.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCGTGCTCCAATCTGCG	NA	False	NA	NA	False	NA	NA	NA	75586255	75582623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_75582679_75582833_75583028_75583399_75583560_75583639_75583746_75584103_75584301_75584850_75584925_75585064_75585213_75585296_75585461_75585900
70845	chr8	+	2077	6	ISM	ENSMUSG00000011832.17	ENSMUST00000175650.8	2451	7	2047	6	-307	-6	3prime_fragment	FALSE	canonical	3	19	junction_2	5.89915248150105	15	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACACAGTCCTAAGGGATG	2288	False	NA	NA	False	NA	NA	NA	4255421	4258036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_4255463_4255571_4255728_4255823_4255971_4256055_4256152_4256231_4256328_4256495
70847	chr7	-	1720	1	FSM	ENSMUSG00000110010.2	ENSMUST00000209629.2	2546	1	-615	1441	-615	-1441	mono-exon	FALSE	NA	NA	NA	NA	NA	9	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGATTTGTGGATTGGGC	NA	False	NA	NA	False	NA	NA	NA	46335422	46333702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46333700_46335400
70850	chr9	+	399	2	Genic_Genomic	ENSMUSG00000062933.8	novel	490	1	NA	NA	88	204	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96777798	96778404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_96778125_96778331
70851	chr4	+	2417	1	Intergenic	novelGene_1992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCGAAACAGTGAGGTGCT	5857	False	NA	NA	False	NA	NA	NA	138431595	138434012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_138431600_138434000
70852	chr5	+	952	1	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	68426	417	4598	-417	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAATTGTTCTGTACAACT	NA	False	NA	NA	False	NA	NA	NA	23707864	23708816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_23707900_23708800
70853	chr18	+	970	3	NNC	ENSMUSG00000117783.2	novel	937	6	NA	NA	3446	-526	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	1	8	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAACAACAATAAAAACA	NA	False	NA	NA	False	NA	NA	NA	83377155	83385744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_83377264_83381662_83381799_83385018
70854	chr4	-	1359	7	ISM	ENSMUSG00000058498.13	ENSMUST00000076183.12	2466	17	5264	6	4	-6	3prime_fragment	TRUE	canonical	3	14	junction_6	4.78423336480244	17	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAAAAGAAGAGTACAGTG	NA	False	NA	NA	False	NA	NA	NA	152397801	152391481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_152392074_152393294_152393361_152395840_152395959_152396228_152396281_152396527_152396714_152396846_152397034_152397643
70855	chr8	-	767	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	234	401	207	-401	multi-exon	FALSE	canonical	3	179	junction_1	20.3960780543711	43	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGATATCCTAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	22966664	22953031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
70857	chr11	-	766	2	FSM	ENSMUSG00000039670.3	ENSMUST00000137632.2	372	2	-112	-282	20	3	multi-exon	FALSE	canonical	2	7	junction_1	0	200	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGGGGCTTTTGTGTTGT	979	False	NA	NA	False	NA	NA	NA	120348874	120347428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120347989_120348668
70859	chr15	+	519	5	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-8893	-69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	133.621433535193	1	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGAGTACGTGAAGTGC	NA	False	NA	NA	False	NA	NA	NA	100143202	100157724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100143231_100149958_100150081_100151974_100152155_100152234_100152395_100157695
70860	chr4	+	979	1	Antisense	novelGene_ENSMUSG00000080916.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAGGAAAGAGAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	44752158	44753137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_44752200_44753100
70861	chrX	-	715	4	NNC	ENSMUSG00000073243.3	novel	817	4	NA	NA	4	16	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_3	30.9012764928714	5	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGGTTGTGGCCTTGCGA	NA	False	NA	NA	False	NA	NA	NA	36474690	36472984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36473184_36473576_36473674_36473912_36474112_36474470
70863	chr11	-	1476	2	FSM	ENSMUSG00000018776.11	ENSMUST00000231829.2	1494	2	24	-6	24	6	multi-exon	FALSE	canonical	0	0	junction_1	0	14	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTGGAGAGAGATGCC	9984	False	NA	NA	False	NA	NA	NA	69652646	69650709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69651981_69652441
70864	chr7	+	1569	9	FSM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	50	0	50	0	multi-exon	FALSE	canonical	3	8	junction_1	6.69771416230941	94	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCGAGAGTTGATTATC	NA	False	NA	NA	False	NA	NA	NA	24569531	24577076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24569598_24571902_24572131_24572204_24572360_24573346_24573424_24573622_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
70865	chr15	-	2548	9	ISM	ENSMUSG00000068227.10	ENSMUST00000163494.3	1895	10	1892	-761	1892	761	3prime_fragment	FALSE	canonical	0	0	junction_2	1.11803398874989	4	62	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTACACCACAAACATTG	NA	False	NA	NA	False	NA	NA	NA	78376064	78364762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_78366384_78368135_78368221_78369122_78369244_78369931_78370098_78370573_78370723_78372324_78372431_78374381_78374464_78375064_78375180_78375961
70866	chr7	-	861	9	NNC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	622.829430903839	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGATAGTGGGCATG	9074	False	NA	NA	False	NA	NA	NA	45045133	45025893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45025941_45032480_45032609_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
70867	chr8	+	1559	2	Antisense	novelGene_ENSMUSG00000052906.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTATATATTATGGCT	NA	False	NA	NA	False	NA	NA	NA	34131807	34133434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_34132022_34132089
70868	chr1	-	756	1	FSM	ENSMUSG00000103653.2	ENSMUST00000195526.2	631	1	-66	-59	-66	59	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GACAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	191758816	191758060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_191758100_191758800
70869	chr4	+	1075	8	NIC	ENSMUSG00000028519.17	novel	5278	15	NA	NA	-22	1	combination_of_known_junctions	FALSE	canonical	3	27	junction_7	7.28991475552747	55	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGACTGTTGTAACTTTC	NA	False	NA	NA	False	NA	NA	NA	104224764	104537580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266_104537306_104537387
70871	chr12	-	823	6	FSM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	-29	1490	-6	-1490	multi-exon	FALSE	canonical	3	129	junction_3	88.6715286887511	360	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	81579685	81518866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
70874	chr15	+	976	1	Intergenic	novelGene_3272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTGTGCTGCAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	36668131	36669107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_36668100_36669100
70875	chr12	+	902	1	Intergenic	novelGene_4485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTCATTTTGATATAAAA	NA	False	NA	NA	False	NA	NA	NA	114101920	114102822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_114101900_114102800
70876	chr5	-	911	1	Intergenic	novelGene_872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACACTGTAGCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	140404504	140403593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_140403600_140404500
70879	chr14	-	1974	13	NNC	ENSMUSG00000114345.2	novel	2705	4	NA	NA	11579	11862	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCACCTCCGCGGCCGACCG	3121	False	NA	NA	False	NA	NA	NA	56617440	56602496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_56602746_56603404_56603553_56605836_56605897_56608229_56608434_56609195_56609308_56610033_56610171_56610299_56610424_56610648_56610912_56611879_56612083_56612216_56612325_56613592_56613727_56615736_56615932_56617403
70880	chr5	-	398	1	Intergenic	novelGene_835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTATGTAGCCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	115353180	115352782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_115352800_115353200
70881	chr8	-	1730	9	FSM	ENSMUSG00000037852.9	ENSMUST00000048967.9	2117	9	370	17	370	-17	multi-exon	FALSE	canonical	3	35	junction_4	3.34477204006491	21	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	65145718	65045592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_65046256_65047930_65048050_65050493_65050594_65059636_65059777_65062081_65062265_65064407_65064526_65070571_65070740_65072384_65072582_65145676
70882	chr9	-	1076	5	ISM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	1501	4	1501	-4	3prime_fragment	FALSE	canonical	3	59	junction_4	28.1646942110153	198	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACACTGTGTCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	20789522	20785107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344
70883	chr1	-	948	6	NNC	ENSMUSG00000026603.14	novel	1680	12	NA	NA	2082	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	176.079073146129	100	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	189619117	189612688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_189613064_189614305_189614415_189616020_189616199_189617495_189617617_189618717_189618829_189619063
70884	chr7	-	1329	1	Intergenic	novelGene_3019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACTTGAAATTTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	109388956	109387627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_109387600_109389000
70885	chr15	+	816	6	FSM	ENSMUSG00000022359.11	ENSMUST00000227142.2	786	6	-28	-2	3	2	multi-exon	FALSE	canonical	2	3	junction_5	23.3203773554375	24	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATATTGTTTGTTTGTTTT	2663	False	NA	NA	False	NA	NA	NA	58004775	58018723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58018534
70886	chr4	+	1663	1	FSM	ENSMUSG00000074738.3	ENSMUST00000099265.3	2140	1	467	10	467	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	25	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTCAGACCAAAACCACTG	NA	False	NA	NA	False	NA	NA	NA	155779265	155780928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155779300_155780900
70887	chr6	+	1368	1	Antisense	novelGene_ENSMUSG00000000627.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAAGACAAGAGGCCATA	NA	False	NA	NA	False	NA	NA	NA	82888868	82890236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_82888900_82890200
70888	chr1	-	311	2	ISM	ENSMUSG00000079658.10	ENSMUST00000185393.7	366	3	2244	-64	2244	64	3prime_fragment	FALSE	canonical	3	2725	junction_1	0	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAATAAACTGTTAATTT	NA	False	NA	NA	False	NA	NA	NA	16716019	16713501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16713703_16715909
70889	chr2	+	1295	6	NNC	ENSMUSG00000002728.15	novel	1172	6	NA	NA	7	-144	intron_retention	FALSE	non_canonical	0	0	junction_5	474.066915107983	4	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCTGAGATGTATAGTAAA	NA	False	NA	NA	False	NA	NA	NA	145745188	145758201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145745283_145750510_145750536_145753592_145754449_145757453_145757600_145757723_145757807_145758110
70891	chr5	-	655	3	ISM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	321	22449	321	-21865	5prime_fragment	FALSE	canonical	3	47	junction_2	1	1	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTCGAGGCTGTAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	124669133	124653591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_124653700_124659313_124659465_124668737
70892	chrX	-	2195	9	Antisense	novelGene_ENSMUSG00000031375.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	37	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGAGACAGAGGCGGTGG	NA	False	NA	NA	False	NA	NA	NA	72539481	72527243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72527364_72534379_72534636_72534922_72535033_72535548_72535767_72536327_72536438_72536566_72536655_72536799_72536939_72538198_72539143_72539271
70893	chr13	+	1797	6	NNC	ENSMUSG00000097502.3	novel	1348	3	NA	NA	946	12555	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	1.16619037896906	7	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGGAGTTGCCTTGGTC	6359	False	NA	NA	False	NA	NA	NA	59882409	59899554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59882455_59882560_59882653_59890468_59890620_59890851_59890993_59891831_59891952_59898306
70894	chr7	+	1074	7	NNC	ENSMUSG00000054169.8	novel	1048	4	NA	NA	-5552	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	10.6249183003395	38	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCTCCTTCGACTCTA	774	False	NA	NA	False	NA	NA	NA	24471078	24484081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24471221_24472009_24472071_24473674_24473740_24474864_24474981_24477550_24477687_24480294_24480655_24483887
70895	chr12	+	819	4	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55383	13604	16084	-13604	internal_fragment	FALSE	canonical	3	37	junction_2	6.54896090146283	59	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTTACTGAGTACCACT	NA	False	NA	NA	False	NA	NA	NA	105727617	105735102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788
70897	chr9	-	1450	2	Antisense	novelGene_ENSMUSG00000025785.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCGCTGGCGTGTCATCAG	7130	False	NA	NA	False	NA	NA	NA	122943853	122942313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_122943686_122943775
70898	chr5	+	925	1	ISM	ENSMUSG00000041827.16	ENSMUST00000031540.11	2125	7	13717	31	932	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAGAATAAAAAAGCCATT	NA	False	NA	NA	False	NA	NA	NA	115075015	115075940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115075000_115075900
70899	chr17	+	1373	3	ISM	ENSMUSG00000024334.10	ENSMUST00000174670.2	1231	4	1272	-110	1272	109	3prime_fragment	FALSE	canonical	2	15	junction_1	2	72	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCATCTCACCTGTGCC	553	False	NA	NA	False	NA	NA	NA	34312667	34314317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34313564_34313656_34313793_34313976
70900	chr2	-	1910	14	FSM	ENSMUSG00000026888.15	ENSMUST00000028252.14	1986	14	74	2	74	-2	multi-exon	FALSE	canonical	1	2	junction_8	3.05182068075037	10	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGACTCGTGTTCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	64853052	64742821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_64743198_64745059_64745154_64747172_64747261_64747378_64747452_64747542_64747660_64753880_64753962_64760243_64760340_64760529_64760641_64763563_64763702_64766760_64766836_64768712_64768835_64783905_64784063_64851430_64851564_64852803
70901	chr2	+	1947	7	ISM	ENSMUSG00000059842.13	ENSMUST00000109702.2	3162	15	20759	-21	20759	21	3prime_fragment	FALSE	canonical	2	3	junction_4	3.98608691436713	11	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCATGGGTCCAAACCACC	3770	False	NA	NA	False	NA	NA	NA	154476048	154488719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_154476198_154479933_154480143_154483235_154483333_154483901_154484035_154485408_154485521_154485706_154485778_154487543
70902	chrX	+	528	1	Genic_Genomic	ENSMUSG00000031217.9	novel	NA	NA	NA	NA	10342	9	mono-exon	FALSE	NA	NA	NA	NA	NA	25	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATTAACCACATG	NA	False	NA	NA	False	NA	NA	NA	98192078	98192606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_98192100_98192600
70903	chrX	-	417	2	Genic_Genomic	ENSMUSG00000080241.4	novel	451	1	NA	NA	-85	281	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAAGGAAACTATC	-23	True	NA	NA	False	NA	NA	NA	36807835	36807018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_36807250_36807649
70904	chr1	+	2250	13	ISM	ENSMUSG00000025991.9	ENSMUST00000027144.8	5555	38	81478	29	81478	-29	3prime_fragment	FALSE	canonical	0	0	junction_2	3.27448045073142	15	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAACTTTTAAATAAAATAC	NA	False	NA	NA	False	NA	NA	NA	67243662	67270389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_67243862_67244290_67244359_67245914_67245991_67248754_67248833_67251561_67251670_67253175_67253266_67254568_67254740_67257010_67257086_67259661_67259761_67266282_67266343_67267394_67267508_67268547_67268678_67269406
70905	chr17	-	488	1	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	1469	-5	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45879193	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45878700_45879200
70907	chr10	-	413	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	121	10	73	-10	multi-exon	FALSE	canonical	3	12818	junction_1	2119	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGACCACGGTTGCCTC	NA	False	NA	NA	False	NA	NA	NA	75695953	75695196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75695378_75695520_75695694_75695894
70909	chr2	+	798	5	NNC	ENSMUSG00000027455.17	novel	1369	8	NA	NA	-5	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	695.363753728939	42	10	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTGAAGAAATACTACCAA	NA	False	NA	NA	False	NA	NA	NA	151336204	151353214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_151336333_151338503_151338602_151342634_151342710_151344928_151345038_151352826
70910	chr12	+	1472	1	Antisense	novelGene_ENSMUSG00000021252.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCGCCTGAGCATTTGT	NA	False	NA	NA	False	NA	NA	NA	85864453	85865925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_85864500_85865900
70911	chr13	-	1894	10	FSM	ENSMUSG00000021432.16	ENSMUST00000225432.2	2216	10	285	37	-2	-37	multi-exon	FALSE	canonical	3	16	junction_6	14.9004929904357	90	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAAATGTATTAAT	NA	False	NA	NA	False	NA	NA	NA	39144515	39116152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
70912	chr2	-	518	5	ISM	ENSMUSG00000027344.15	ENSMUST00000028821.10	1673	11	15268	17536	15258	-17536	internal_fragment	FALSE	canonical	0	0	junction_3	2.12132034355964	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCGGAGAGAAGATACTC	NA	False	NA	NA	False	NA	NA	NA	118072179	118052904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_118052942_118063384_118063541_118067394_118067506_118070872_118071031_118072123
70913	chr8	+	610	5	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	74	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	742.616783745156	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	75836325	75854316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836715_75836845_75839229_75839345_75840792_75840856_75854190
70915	chr8	-	414	2	Intergenic	novelGene_1776	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_1	0	122	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGACTTGACTTCAAGT	NA	False	NA	NA	False	NA	NA	NA	122106287	122105741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_122106116_122106247
70916	chr6	+	1062	1	NIC	ENSMUSG00000046679.17	novel	2534	10	NA	NA	42	4	mono-exon	FALSE	NA	NA	NA	NA	NA	216	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTCGGGTCTCAAATT	1510	False	NA	NA	False	NA	NA	NA	86415412	86416474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86415400_86416500
70917	chr12	-	776	1	NIC	ENSMUSG00000008822.16	novel	648	3	NA	NA	251	-387	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAACCTTACTATTTT	4671	False	NA	NA	False	NA	NA	NA	85326829	85326053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_85326100_85326800
70918	chr5	-	646	6	NNC	ENSMUSG00000029730.17	novel	736	6	NA	NA	0	44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	960.674846136818	1	24	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGGAAATGAAGATTCAAGA	2323	False	NA	-86	True	NA	NA	NA	138170077	138167095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138167210_138167359_138167537_138167606_138167736_138167821_138167894_138168594_138168659_138169987
70919	chr9	-	1172	9	ISM	ENSMUSG00000032579.15	ENSMUST00000148165.7	1888	10	1589	29	-65	-9	3prime_fragment	FALSE	canonical	3	152	junction_6	17.5766179909561	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTGAGAGAGCAATAAATG	NA	False	NA	NA	False	NA	NA	NA	107213927	107204919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770
70920	chr4	-	568	2	Intergenic	novelGene_1967	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	94	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCAAACCAAACTGGAGA	NA	False	NA	NA	False	NA	NA	NA	130362535	130359660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_130360111_130362417
70922	chr9	-	827	1	Intergenic	novelGene_1030	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGAGACTCCTTCTCACT	NA	False	NA	NA	False	NA	NA	NA	49606701	49605874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_49605900_49606700
70923	chr1	-	987	3	ISM	ENSMUSG00000026273.14	ENSMUST00000112944.8	3097	4	813	2015	813	-21	3prime_fragment	FALSE	canonical	3	13	junction_1	34.5	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGGGGTGCAACCCTTC	NA	False	NA	NA	False	NA	NA	NA	93232772	93228947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_93229307_93230439_93230625_93232329
70924	chr10	-	2229	1	Antisense	novelGene_ENSMUSG00000109864.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTCATATCGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	82705238	82703009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_82703000_82705200
70925	chrX	+	744	1	FSM	ENSMUSG00000079871.5	ENSMUST00000115987.3	360	1	-221	-163	-221	163	mono-exon	FALSE	NA	NA	NA	NA	NA	194	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGAGTGTTGCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	12518320	12519064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12518300_12519100
70926	chr5	-	1596	1	Intergenic	novelGene_664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTAGAAAAAAAAGAGTAAA	NA	False	NA	NA	False	NA	NA	NA	21993893	21992297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_21992300_21993900
70927	chr11	+	699	6	NNC	ENSMUSG00000018449.13	novel	1100	7	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	129.845138530482	90	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGGTGTTCTGATGT	NA	False	NA	NA	False	NA	NA	NA	70861324	70868628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864701_70865706_70865867_70868483
70928	chr12	-	1941	4	FSM	ENSMUSG00000021265.4	ENSMUST00000021693.4	1976	4	28	7	28	-7	multi-exon	FALSE	canonical	3	8	junction_1	5.09901951359278	11	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTGTGTGAAGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	108801781	108791805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_108793415_108793599_108793684_108797122_108797167_108801577
70929	chr15	-	1071	5	Intergenic	novelGene_3361	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	25	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACAAATCTTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	97101709	97085288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97085700_97096754_97096874_97097494_97097614_97099407_97099522_97101401
70930	chr4	+	387	1	FSM	ENSMUSG00000070572.8	ENSMUST00000117987.2	378	1	171	-180	171	180	mono-exon	FALSE	NA	NA	NA	NA	NA	31	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAACAGTAGCT	2085	False	NA	NA	False	NA	NA	NA	149541956	149542343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_149542000_149542300
70931	chr5	-	1281	11	NNC	ENSMUSG00000029455.15	novel	3867	13	NA	NA	63	152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	193.457514715764	22	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAATCAGCAGATCAAA	NA	False	NA	NA	False	NA	NA	NA	121731580	121705788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121705897_121710196_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
70932	chr5	+	1173	1	Antisense	novelGene_ENSMUSG00000106374.2_AS_novelGene_ENSMUSG00002075664.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCCCACTGCTCGCCG	NA	False	NA	NA	False	NA	NA	NA	111477225	111478398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_111477200_111478400
70934	chr14	+	859	7	NIC	ENSMUSG00000021996.17	novel	1988	9	NA	NA	-9	-2	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	497.529786936309	13	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTTTAAATTGTTATT	NA	False	NA	NA	False	NA	NA	NA	74973397	74987286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74982087_74982187_74982989_74983158_74987084
70937	chr12	+	853	2	NNC	ENSMUSG00000046675.8	novel	3367	2	NA	NA	-40	-2158	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	0	265	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTGCTTGCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	102709980	102711662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_102710030_102710858
70938	chr10	-	583	6	NNC	ENSMUSG00000090841.3	novel	665	6	NA	NA	0	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1040.04692201843	63	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTGCTCTCTTTGCC	8245	False	NA	NA	False	NA	NA	NA	128329723	128326752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128326903_128327927_128328006_128328097_128328231_128328466_128328615_128329407_128329436_128329677
70939	chrX	-	1670	4	NNC	ENSMUSG00000079626.3	novel	1091	8	NA	NA	6120	-6	intron_retention	FALSE	canonical	2	3	junction_3	3.29983164553722	45	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCTCAGGTGTCTTC	9704	False	NA	NA	False	NA	NA	NA	36979989	36975321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36975541_36976568_36976615_36978426_36979644_36979801
70940	chr9	-	651	5	NNC	ENSMUSG00000039163.11	novel	1169	4	NA	NA	81	-5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	92.8072599530877	43	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTCAGAGTTCTGA	NA	False	NA	NA	False	NA	NA	NA	117979150	117894167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_117894417_117897741_117897897_117904189_117904281_117944407_117944498_117979084
70941	chr1	-	1386	1	ISM	ENSMUSG00000037035.6	ENSMUST00000038765.6	4255	2	5378	20	5378	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGATGGAGTGCCACGG	NA	False	NA	NA	False	NA	NA	NA	119344600	119343214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_119343200_119344600
70942	chr9	-	1139	6	NNC	ENSMUSG00000092212.4	novel	1458	6	NA	NA	8268	-4	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_2	1.93907194296653	37	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACCAGAGTTGTACTGTC	NA	False	NA	NA	False	NA	NA	NA	119052490	119049557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_119049990_119050186_119050403_119051512_119051622_119051804_119052020_119052238_119052334_119052418
70943	chr6	-	587	5	FSM	ENSMUSG00000001158.14	ENSMUST00000113683.2	1005	5	19	399	-12	-399	multi-exon	FALSE	canonical	3	1763	junction_4	95.7297628744582	15	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTCCTATGAAATATACT	7665	False	NA	NA	False	NA	NA	NA	86661485	86653052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
70945	chr8	+	1109	1	FSM	ENSMUSG00000074052.8	ENSMUST00000181944.2	1992	1	808	75	808	-75	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGACCCCTGGCTCGTGAT	NA	False	NA	NA	False	NA	NA	NA	122635379	122636488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_122635400_122636500
70946	chr2	+	980	3	ISM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	86020	2877	63951	-2877	3prime_fragment	FALSE	canonical	3	208	junction_2	13.5	76	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTAAGTGCGCGGTGTT	NA	False	NA	NA	False	NA	NA	NA	166733527	166737095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166733826_166735420_166735539_166736531
70948	chrX	-	915	3	ISM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	3442	82	-499	-82	intron_retention	FALSE	canonical	3	117	junction_2	8	80	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACTCTTTCTAAGATTCT	NA	False	NA	NA	False	NA	NA	NA	20794352	20791774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_20791999_20793519_20793632_20793773
70949	chr19	-	757	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	60	4	0	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGAGGTGTCTTTGGTGC	NA	False	NA	NA	False	NA	NA	NA	4087925	4085410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
70950	chr19	-	653	5	ISM	ENSMUSG00000039330.6	ENSMUST00000235569.2	1726	8	2472	28	2472	-28	3prime_fragment	TRUE	canonical	3	37	junction_4	5.06828373317832	40	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAGAGAAAAATTAAACGCT	7456	False	NA	NA	False	NA	NA	NA	5450082	5440104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310_5444482_5449940
70951	chr1	-	1052	1	Intergenic	novelGene_447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTTCTAAGAGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	133233267	133232215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_133232200_133233300
70952	chr15	+	842	1	ISM	ENSMUSG00000000531.6	ENSMUST00000000543.6	2033	8	7722	5	7722	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	62	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATCTGTGTCAGTGTGG	853	False	NA	NA	False	NA	NA	NA	101129790	101130632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101129800_101130600
70953	chr10	-	2554	4	Intergenic	novelGene_3463	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	43	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGAAAAAAATCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	67572588	67566976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_67568942_67569545_67569684_67570772_67571096_67572460
70954	chr7	-	857	5	FSM	ENSMUSG00000035642.17	ENSMUST00000154853.8	883	5	14	12	0	0	multi-exon	FALSE	canonical	3	45	junction_3	23.5902522241709	414	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAGGCCAAAGAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	97228689	97199558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794_97224899_97228572
70956	chr11	+	510	4	FSM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	-43	6	-26	-6	multi-exon	FALSE	canonical	3	69	junction_1	38.4967531098403	446	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTATTAGTGTTTACCTG	NA	False	NA	NA	False	NA	NA	NA	94024284	94046596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_94024382_94029312_94029490_94046281_94046324_94046402
70957	chr11	-	915	2	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	34	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	52	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGGGATTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	120472416	120468939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469786_120472347
70958	chr11	+	644	3	NNC	ENSMUSG00000024414.14	novel	756	4	NA	NA	2721	14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	383	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACAGGTGGCTGCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	94547577	94550929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_94547659_94547808_94547877_94550434
70959	chr8	-	1468	8	FSM	ENSMUSG00000035964.9	ENSMUST00000045286.9	1491	8	21	2	-13	-2	multi-exon	FALSE	canonical	1	2	junction_1	1.03015750727543	13	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGGGTGGCTGAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	70939987	70936518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70937085_70937183_70937302_70937381_70937497_70937729_70937833_70938324_70938478_70938686_70938785_70938877_70939023_70939817
70962	chr16	+	2426	1	Intergenic	novelGene_3648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTCCCATAACCCCCTTC	2945	False	NA	NA	False	NA	NA	NA	36310943	36313369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_36310900_36313400
70963	chr17	+	791	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	-17	4	-17	1	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	77	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATTTTAGCTGTAAG	1561	False	NA	NA	False	NA	NA	NA	57369265	57372913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
70964	chr2	-	721	3	FSM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	29	2166	19	-2166	multi-exon	FALSE	canonical	3	313	junction_2	24.5	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGGCTCCTGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	26242093	26240298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26240571_26241346_26241487_26241784
70965	chr5	-	1996	1	Genic_Intron	novelGene_969	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTTCCTCTTTGTGAAG	NA	False	NA	NA	False	NA	NA	NA	147466036	147464040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Intron_chr5_-_147464000_147466000
70966	chr4	+	710	3	Intergenic	novelGene_1851	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	26.5	185	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTATCAGAGTAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	53340098	53342753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_53340569_53340696_53340778_53342594
70967	chr17	-	431	1	Intergenic	novelGene_303	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGAGCTACCCGCATC	3464	False	NA	NA	False	NA	NA	NA	80935309	80934878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_80934900_80935300
70969	chr15	+	764	1	NIC	ENSMUSG00000115367.2	novel	1064	3	NA	NA	4705	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTTTCTGCCGTCACCT	NA	False	NA	NA	False	NA	NA	NA	40030707	40031471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_40030700_40031500
70970	chr3	-	625	4	ISM	ENSMUSG00000049013.4	ENSMUST00000061343.4	949	6	1551	3422	1551	-3422	internal_fragment	FALSE	canonical	2	4	junction_1	0.471404520791032	2	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGGAAGGATAGCTGCAAG	NA	False	NA	NA	False	NA	NA	NA	85908247	85904538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_85904686_85905360_85905621_85907688_85907852_85908192
70971	chr7	-	2114	1	Antisense	novelGene_ENSMUSG00000047603.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTGTAAAATTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	23839047	23836933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_23836900_23839000
70972	chr7	+	1060	6	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	0	-107	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	73.3746550247427	42	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGATACAAAAATAAAATTCT	NA	False	NA	NA	False	NA	NA	NA	130972884	130994390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130994228
70973	chr3	+	1249	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	-28	10	-11	-10	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	73	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTACACATATTTTATGT	NA	False	NA	NA	False	NA	NA	NA	94320595	94333685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
70975	chr15	-	1358	1	NIC	ENSMUSG00000023050.10	novel	4318	16	NA	NA	722	491	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGATCCCAAACAAACCC	NA	False	NA	NA	False	NA	NA	NA	102418413	102417055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102417100_102418400
70976	chr1	+	349	1	Antisense	novelGene_ENSMUSG00000101939.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	491	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTCTTCTGGGTTTATT	NA	False	NA	NA	False	NA	NA	NA	24651851	24652200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24651900_24652200
70977	chr1	-	1228	12	NNC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	24	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	178.56619024194	4	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTTCTTTTTTTCCTAG	NA	False	NA	NA	False	NA	NA	NA	91326398	91303571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312282_91312381_91312961_91313069_91314936_91315064_91316066_91316169_91318328_91318386_91318853_91318920_91326372
70979	chrX	-	892	1	Intergenic	novelGene_3980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAATGATGTCTTGATTT	NA	False	NA	NA	False	NA	NA	NA	93837608	93836716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_93836700_93837600
70980	chr6	+	1293	3	Antisense	novelGene_ENSMUSG00000079298.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTGCATTGTAATTT	NA	False	NA	NA	False	NA	NA	NA	128791417	128799477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_128791506_128797843_128798364_128798792
70981	chr4	+	1956	5	FSM	ENSMUSG00000028214.14	ENSMUST00000108304.9	2006	5	43	7	43	-7	multi-exon	FALSE	canonical	1	1	junction_2	2.17944947177034	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAAGCATTCTGCTATC	53	False	NA	NA	False	NA	NA	NA	11704499	11714745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11704567_11705904_11706242_11711138_11711216_11711969_11712175_11713475
70985	chr17	-	1739	8	Antisense	novelGene_ENSMUSG00000002250.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCGTCACACGCTCCCAGC	NA	False	NA	NA	False	NA	NA	NA	28518968	28451731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_28451837_28455983_28456068_28505232_28505440_28514312_28514468_28516057_28516198_28517249_28517454_28517557_28518007_28518573
70986	chr19	-	1974	1	Intergenic	novelGene_1275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAAGGGAGATGCACT	NA	False	NA	NA	False	NA	NA	NA	41580807	41578833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_41578800_41580800
70988	chr4	-	1308	7	NIC	ENSMUSG00000028842.16	novel	625	4	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	7.32006375199925	28	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATATCATTGTCCTTTCA	2379	False	NA	NA	False	NA	NA	NA	126323334	126269473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126269734_126270699_126270835_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
70989	chr10	-	1581	8	NNC	ENSMUSG00000037031.11	novel	3638	8	NA	NA	13873	354	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_7	90.561513652887	67	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTGTTTGGAAGTCT	NA	False	NA	NA	False	NA	NA	NA	62053157	62023133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62053023
70991	chr5	+	758	4	NNC	ENSMUSG00000004951.11	novel	903	3	NA	NA	-49	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1033.35774164721	113	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCGTCTGACTCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	135916822	135918412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135917018_135917107_135917289_135917902_135917967_135918094
70992	chr9	-	1695	1	Intergenic	novelGene_1001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAATGAACATCTCAGCAA	NA	False	NA	NA	False	NA	NA	NA	25197936	25196241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_25196200_25197900
70993	chr4	-	717	6	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-2809	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	47.5663746779172	230	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	141549322	141542272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549264
70994	chr19	-	714	2	ISM	ENSMUSG00000025197.10	ENSMUST00000026211.10	1916	9	22052	11	22052	-11	3prime_fragment	TRUE	canonical	3	15	junction_1	0	61	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAATAATAGTTTCTTTG	10003	False	NA	NA	False	NA	NA	NA	43995586	43993471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_43994062_43995462
70995	chr5	-	834	2	NIC	ENSMUSG00000104529.5	novel	520	3	NA	NA	18	-5	intron_retention	FALSE	canonical	3	32	junction_1	0	101	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATTGTGTGTCGCCTCC	3495	False	NA	NA	False	NA	NA	NA	143151488	143150538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143151305_143151420
70996	chr18	+	1238	9	FSM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	14	30	-8	-30	multi-exon	FALSE	canonical	3	285	junction_6	11.1740491765519	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACCCAGAGAAATTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	12301787	12314147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722
70997	chrX	+	744	6	FSM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	119	20	64	-20	multi-exon	FALSE	canonical	3	578	junction_1	90.9382207875215	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAACTATCAGACAGCA	NA	False	NA	NA	False	NA	NA	NA	20736523	20740952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
70998	chr5	-	497	7	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4416.32183559527	1	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548738	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65545785_65545904_65546005_65546913_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
70999	chr13	-	1394	6	NNC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	-11	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	67.9629310727547	2	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGTCTTTGTTGAACT	NA	False	NA	NA	False	NA	NA	NA	91955791	91944656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_91945020_91945059_91945374_91948729_91948823_91948984_91949136_91953869_91954280_91955728
71002	chr17	-	592	5	FSM	ENSMUSG00000055839.7	ENSMUST00000233593.2	578	5	-16	2	0	-2	multi-exon	FALSE	canonical	3	73	junction_2	5034.57517448096	84	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGCATTTCTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	24048088	24043715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24043954_24045559_24045641_24046441_24046548_24047817_24047953_24048056
71007	chr2	+	923	1	ISM	ENSMUSG00000026748.14	ENSMUST00000028081.13	6947	14	395310	3303	112918	679	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTCAATATTTTTATGTC	1101	False	NA	-62	True	NA	NA	NA	16756424	16757347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_16756400_16757300
71008	chr5	-	1014	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	19	9	19	-9	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	80	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATGCACATGGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	31854952	31781791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
71009	chr5	+	1976	15	NIC	ENSMUSG00000045482.17	novel	12344	70	NA	NA	-20	-2464	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	14.7814003368547	6	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATACTCGCTTCCACTCT	NA	False	NA	NA	False	NA	NA	NA	144705333	144727997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_144705532_144707898_144708060_144708417_144708468_144713912_144714024_144714690_144714796_144716793_144716878_144718785_144718843_144719005_144719132_144720797_144720876_144721067_144721157_144722278_144722376_144723441_144723581_144724469_144724549_144726167_144726403_144727630
71010	chr5	-	1753	1	Intergenic	novelGene_816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAGAAGCCACCCAACCC	NA	False	NA	NA	False	NA	NA	NA	110955931	110954178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_110954200_110955900
71012	chr2	+	928	6	NNC	ENSMUSG00000035437.16	novel	4967	26	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	116.727717359674	11	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATTGCTTCATACAAAAGT	1550	False	NA	NA	False	NA	NA	NA	37333301	37456448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365336_37456344
71013	chr7	-	1251	2	ISM	ENSMUSG00000030556.14	ENSMUST00000191386.2	554	4	1912	-826	1890	-176	3prime_fragment	FALSE	canonical	2	6	junction_1	0	10	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCCATGTCAGTACAGA	NA	False	NA	NA	False	NA	NA	NA	67267834	67244322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_67245480_67267740
71014	chr17	-	581	4	NNC	ENSMUSG00000036315.14	novel	742	4	NA	NA	59	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	325.665472532782	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTTGGTCCCCTCCGG	NA	False	NA	NA	False	NA	NA	NA	37269315	37265352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_37265445_37268454_37268568_37268723_37268825_37269040
71015	chr1	-	1228	2	Intergenic	novelGene_408	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAAAGTTTTCTCTAA	NA	False	NA	NA	False	NA	NA	NA	90447982	90444895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_90446035_90447893
71016	chr19	+	1936	1	Intergenic	novelGene_1274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTCCCCTCCTGACT	NA	False	NA	NA	False	NA	NA	NA	41578829	41580765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41578800_41580800
71019	chr1	+	315	1	ISM	ENSMUSG00000026490.19	ENSMUST00000111117.8	9161	37	204699	5	4277	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAGCATTGAGTATTCTA	NA	False	NA	NA	False	NA	NA	NA	179992848	179993163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_179992800_179993200
71020	chr3	+	1289	1	ISM	ENSMUSG00000056476.14	ENSMUST00000040846.15	3747	16	87737	38	86584	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATATGAAATGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	59000982	59002271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_59001000_59002300
71022	chr17	-	1382	5	FSM	ENSMUSG00000032717.15	ENSMUST00000035375.14	1371	5	-5	-6	-5	-2	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	94	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCCAGGACTCTTTACA	2087	False	NA	NA	False	NA	NA	NA	48144221	48126254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868_48143956_48144169
71023	chr19	-	1588	8	NNC	ENSMUSG00000025220.9	novel	5057	16	NA	NA	4136	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	288.180357358629	1	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTATTTTCTGCATCCA	NA	False	NA	96	True	NA	NA	NA	45756189	45740283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_45740710_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832
71025	chr7	+	575	5	NNC	ENSMUSG00000059070.17	novel	679	6	NA	NA	-13	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	3428.22887946531	4	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGATGGTCCTCTGTGTTC	5937	False	NA	NA	False	NA	NA	NA	45367509	45370250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45367564_45368676_45368764_45369315_45369443_45369717_45369912_45370137
71026	chr11	-	977	2	Antisense	novelGene_ENSMUSG00000072582.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCTCGCTCACCTCG	9364	False	NA	NA	False	NA	NA	NA	86576083	86574945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_86575557_86575717
71027	chr15	-	766	4	NNC	ENSMUSG00000003355.8	novel	734	6	NA	NA	553	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	315.646426665449	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGTATTTTTCACTCG	NA	False	NA	NA	False	NA	NA	NA	98625468	98622248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98622533_98624364_98624436_98624780_98624815_98625091
71028	chr12	+	862	6	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	10	-212	combination_of_known_splicesites	FALSE	canonical	3	85	junction_2	143.346293987672	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	NA	False	NA	NA	NA	21366424	21373608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770_21369933_21371334_21371457_21373289
71029	chr17	+	416	4	Antisense	novelGene_ENSMUSG00000014769.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	39.1265752256556	19	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGTCCACTTCCGCCTCC	NA	False	NA	NA	False	NA	NA	NA	15696380	15718566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_15696466_15697574_15697643_15714679_15714783_15718406
71031	chr4	+	1106	1	NIC	ENSMUSG00000006445.4	novel	3913	17	NA	NA	11354	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCAAACTGATTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	141055577	141056683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_141055600_141056700
71032	chr2	+	1521	3	FSM	ENSMUSG00000050373.14	ENSMUST00000056181.7	2590	3	32	1037	6	149	multi-exon	FALSE	canonical	3	13	junction_2	6.5	24	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCAATCTCTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	164627942	164634693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164628245_164628617_164628776_164633632
71034	chr10	-	1952	16	ISM	ENSMUSG00000019989.9	ENSMUST00000020169.9	4253	25	30182	1406	-8272	19	3prime_fragment	FALSE	canonical	1	2	junction_4	3.29983164553722	20	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTAGAGTCATACTATAC	NA	False	NA	NA	False	NA	NA	NA	24681941	24649709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_24649971_24650680_24650838_24652658_24652792_24653791_24653870_24654590_24654724_24660687_24660843_24662356_24662412_24663616_24663796_24667886_24667975_24669482_24669550_24671583_24671712_24673656_24673689_24674049_24674179_24675055_24675165_24680296_24680370_24681766
71035	chr5	-	2168	1	Antisense	novelGene_ENSMUSG00000045435.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGTTCCCGCCGCCCT	NA	False	NA	NA	False	NA	NA	NA	21089622	21087454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_21087500_21089600
71036	chr7	-	641	5	Genic_Genomic	ENSMUSG00000036835.8	novel	488	4	NA	NA	-1731	-977	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAACGCGCCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	30264783	30262768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_30262825_30262956_30263042_30263624_30263725_30263896_30264032_30264518
71037	chr4	+	1281	4	ISM	ENSMUSG00000070972.14	ENSMUST00000153467.3	2393	5	10438	748	10438	309	3prime_fragment	FALSE	canonical	3	12	junction_1	41.515726605174	33	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGAAGTGTTTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	59013630	59022992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_59013856_59017669_59017823_59020058_59020530_59022560
71038	chr7	-	651	3	ISM	ENSMUSG00000030708.15	ENSMUST00000054923.9	847	7	6994	-61	6994	3	3prime_fragment	FALSE	canonical	3	56	junction_2	3	49	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGATGGGAAGTGAGTT	NA	False	NA	NA	False	NA	NA	NA	100153994	100152224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_100152518_100153122_100153200_100153713
71039	chr9	-	1181	3	Intergenic	novelGene_1044	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	8.5	56	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTAAAAAAACCCTAAG	NA	False	NA	NA	False	NA	NA	NA	53788490	53775964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_53776927_53777088_53777180_53788362
71040	chr4	-	949	1	Intergenic	novelGene_2002	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACACACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	141024597	141023648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_141023600_141024600
71042	chr7	+	1464	4	FSM	ENSMUSG00000002204.10	ENSMUST00000207302.2	603	4	-621	-240	-621	-12	multi-exon	FALSE	canonical	2	3	junction_3	3.68178700572909	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAATCAACTTT	5267	False	NA	NA	False	NA	NA	NA	44233617	44236274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44234546_44234642_44234788_44235137_44235237_44235982
71045	chr17	+	660	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	-3	-180	-3	179	mono-exon	FALSE	NA	NA	NA	NA	NA	206	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGTAAACTATTCCTGTG	4780	False	NA	NA	False	NA	NA	NA	24747237	24747897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24747200_24747900
71047	chr5	-	1094	1	Antisense	novelGene_ENSMUSG00000097140.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAAGAGATTGTTGGTAG	NA	False	NA	NA	False	NA	NA	NA	110035244	110034150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_110034200_110035200
71049	chr1	-	1276	1	NIC	ENSMUSG00000097229.2	novel	2439	2	NA	NA	48	-1229	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAAAATAAAACGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	136552340	136551064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_136551100_136552300
71050	chr7	+	240	1	Intergenic	novelGene_2925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATACTCTATAAAGAGTAT	NA	False	NA	NA	False	NA	NA	NA	34220321	34220561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_34220300_34220600
71052	chr9	+	617	6	FSM	ENSMUSG00000059412.8	ENSMUST00000041005.6	632	6	15	0	15	0	multi-exon	FALSE	canonical	3	206	junction_5	6.73498329619309	887	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	NA	False	NA	NA	NA	45314450	45321576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_45314599_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
71055	chr2	+	1131	1	ISM	ENSMUSG00000040007.9	ENSMUST00000036578.7	4594	7	21929	16	21929	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	81	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTGATTTAGAAAAGAGT	6598	False	NA	NA	False	NA	NA	NA	118753862	118754993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_118753900_118755000
71056	chr1	-	1998	1	Intergenic	novelGene_454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGCTCCTGCTC	NA	False	NA	NA	False	NA	NA	NA	135357875	135355877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_135355900_135357900
71061	chrX	+	386	2	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	19253	475	1556	-475	3prime_fragment	FALSE	canonical	3	3976	junction_1	0	58	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	160	False	NA	NA	False	NA	NA	NA	20548389	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20548449_20548616
71065	chr6	-	350	3	NNC	ENSMUSG00000079523.9	novel	433	2	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13607.5	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCATGGTTGGCGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	72935382	72934339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72934549_72934929_72935008_72935319
71066	chr8	-	1405	1	Intergenic	novelGene_1681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGAGGAGAGAGAAGAGAG	9102	False	NA	NA	False	NA	NA	NA	84654836	84653431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_84653400_84654800
71067	chr2	-	1282	2	NNC	ENSMUSG00000039671.19	novel	5072	22	NA	NA	66630	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCGTTTCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	165627412	165626073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165627071_165627127
71068	SIRV5	+	258	3	ISM	SIRV5A	SIRV507	533	6	0	1451	0	-251	5prime_fragment	FALSE	canonical	3	3871	junction_1	3779	105	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACGCGAGTAAAGGTCTA	NA	False	NA	NA	False	NA	NA	NA	1027	2147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV5_+_1150_1925_2034_2119
71069	chr17	+	1315	12	NNC	ENSMUSG00000019487.12	novel	2016	14	NA	NA	-2	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	110.888522682963	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACTACTGCCCCACCTGA	NA	False	NA	NA	False	NA	NA	NA	57556545	57568720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57556572_57557741_57557858_57557949_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639
71070	chr12	-	1484	1	Intergenic	novelGene_4466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTTTTAATTTTTAA	NA	False	NA	NA	False	NA	NA	NA	108724277	108722793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_108722800_108724300
71071	chr6	+	324	2	Genic_Genomic	ENSMUSG00000071419.8	novel	438	1	NA	NA	-33	33	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGGGGGGGGGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	57994457	57994961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_57994598_57994777
71072	chr8	+	1937	4	NNC	ENSMUSG00000109714.2	novel	961	5	NA	NA	-502	-2	intron_retention	FALSE	canonical	1	3	junction_1	0.816496580927726	12	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTGTTTACCCTTTGCT	2216	False	NA	NA	False	NA	NA	NA	36190826	36201920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_36190871_36191452_36192672_36198015_36198167_36201397
71073	chrX	-	1326	4	FSM	ENSMUSG00000023443.14	ENSMUST00000113066.9	1692	4	361	5	361	-5	multi-exon	FALSE	canonical	3	42	junction_3	6.23609564462324	135	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATATTGGCTTTGAGAG	NA	False	NA	NA	False	NA	NA	NA	136020559	136016150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319
71074	chr9	+	676	3	Intergenic	novelGene_1132	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	5	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTACTGGAACTCATATGT	NA	False	NA	NA	False	NA	NA	NA	95406451	95409451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_95406766_95408952_95409125_95409261
71076	chr7	-	818	5	ISM	ENSMUSG00000025466.20	ENSMUST00000120034.8	680	6	1	2700	1	0	5prime_fragment	FALSE	canonical	3	247	junction_4	96.9278081873308	1275	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1510	False	NA	NA	False	NA	NA	NA	139682315	139679382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
71077	chr9	-	400	2	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	281	-16	at_least_one_novel_splicesite	FALSE	canonical	3	3061	junction_1	0	11	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGAAGTGATTAAAATGTG	NA	False	NA	NA	False	NA	NA	NA	78275178	78274349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78274574_78275002
71078	chr10	+	545	4	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2970.23930947585	3	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2212	False	NA	NA	False	NA	NA	NA	81012495	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81013971_81018154
71079	chr13	+	1985	7	FSM	ENSMUSG00000035509.18	ENSMUST00000045428.7	1965	7	-25	5	-8	-5	multi-exon	FALSE	canonical	1	1	junction_5	3.77123616632825	3	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACTAATATATAATTATTA	NA	False	NA	NA	False	NA	NA	NA	56670295	56685594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727_56675095_56675530_56675654_56680105_56680278_56684636
71080	chr4	-	1781	1	ISM	ENSMUSG00000040536.16	ENSMUST00000041606.14	4922	13	194065	1041	193895	-1041	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTACGAACCTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	14955066	14953285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_14953300_14955100
71081	chr7	-	1522	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	5	11	5	-11	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	370	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGGAAAACTCGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84328595	84264272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
71083	chr5	+	1174	3	Intergenic	novelGene_811	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	4	42	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTCACATAGAGAGACAAG	NA	False	NA	NA	False	NA	NA	NA	110615121	110625305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110615829_110622235_110622403_110625005
71084	chr4	+	542	4	NNC	ENSMUSG00000029066.13	novel	764	4	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	645.346418600119	26	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	155888080	155893288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155888200_155888289_155888401_155891364_155891420_155893031
71085	chr7	-	1064	9	NNC	ENSMUSG00000001794.14	novel	1241	9	NA	NA	47	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	532.307418227475	1	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCGGACTCTGAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	29892350	29886415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29886959_29887095_29887155_29889551_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
71086	chr11	-	289	1	Intergenic	novelGene_2382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCAAAATACTTGCATGTA	728	False	NA	NA	False	NA	NA	NA	63846216	63845927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_63845900_63846200
71087	chr7	-	842	6	NNC	ENSMUSG00000030615.13	novel	799	5	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_5	375.952656593885	902	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGTCTGCAACATTAAAA	1685	False	NA	NA	False	NA	NA	NA	90106397	90099912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90105779_90105868_90106279
71088	chr17	-	762	1	Intergenic	novelGene_255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTCTTAACCACTGAG	NA	False	NA	NA	False	NA	NA	NA	47157713	47156951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_47157000_47157700
71090	chr7	-	762	2	Intergenic	novelGene_3005	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	20	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATCATACAAACTCATCAC	NA	False	NA	NA	False	NA	NA	NA	98521614	98519254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_98519811_98521408
71091	chr1	+	1174	6	FSM	ENSMUSG00000026433.14	ENSMUST00000027693.8	1226	6	52	0	52	0	multi-exon	FALSE	canonical	3	23	junction_1	27.6506781110337	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	NA	False	NA	NA	NA	131795029	131800625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131795149_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
71093	chr19	+	1113	1	Intergenic	novelGene_1291	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCGGGAGACCCTCACTG	6623	False	NA	NA	False	NA	NA	NA	55293036	55294149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_55293000_55294100
71094	chr7	-	437	4	NNC	ENSMUSG00000003429.12	novel	449	4	NA	NA	12	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	12140.870543563	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAACAGGCTTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	44772940	44771810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44771983_44772252_44772340_44772582_44772663_44772842
71096	chr5	+	1551	8	NIC	ENSMUSG00000018001.19	novel	3738	13	NA	NA	-18	-4679	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	24.5631215193735	2	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCTTGTGGGAGTAAGC	NA	False	NA	NA	False	NA	NA	NA	143608237	143689332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_143608429_143670150_143670234_143672227_143672293_143672732_143672800_143678302_143678422_143687073_143687187_143687351_143687501_143688568
71097	chr11	-	1097	10	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-15	-2443	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	334.768244876628	1	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGTACCAAGAAAAGGGTG	1367	False	NA	NA	False	NA	NA	NA	20062882	20014746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041370_20044229_20044336_20044397_20044446_20050822_20050934_20062804
71100	chr5	+	1277	2	FSM	ENSMUSG00000047635.7	ENSMUST00000111477.2	1637	2	44	316	35	-316	multi-exon	FALSE	canonical	3	74	junction_1	0	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTGTGTTGACCCTGCC	5433	False	NA	NA	False	NA	NA	NA	124466195	124477869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124466293_124476689
71101	chr17	+	1584	4	FSM	ENSMUSG00000024403.17	ENSMUST00000130992.2	524	4	-105	-955	-105	-7	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	16	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCAATTGTTGGTGAAAG	8080	False	NA	NA	False	NA	NA	NA	35453958	35457736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35454235_35454463_35454535_35456092_35456194_35456600
71102	chr12	-	786	5	FSM	ENSMUSG00000002804.5	ENSMUST00000002881.5	734	5	-28	-24	-21	-2	multi-exon	FALSE	canonical	3	29	junction_2	82.3995600716412	768	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCCGCTGGCTTTGA	8826	False	NA	NA	False	NA	NA	NA	112905765	112898350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_112898671_112901975_112902178_112902414_112902480_112902898_112902943_112905610
71104	chr4	+	1288	1	Intergenic	novelGene_2168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCCCCCAAACCCCCCT	4507	False	NA	NA	False	NA	NA	NA	150146792	150148080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_150146800_150148100
71105	chr5	+	726	3	ISM	ENSMUSG00000060063.10	ENSMUST00000200806.4	452	5	13828	-416	164	-10	3prime_fragment	FALSE	canonical	3	35	junction_1	4.5	62	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTAACGTCTTCAAGAGTC	NA	False	NA	NA	False	NA	NA	NA	149215984	149224953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_149216057_149222153_149222236_149224381
71106	chr10	+	933	8	NNC	ENSMUSG00000035351.17	novel	1267	10	NA	NA	13	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	181.928108698722	61	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTCCTATTGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	87982866	88014254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010333_88014076
71107	chr5	-	1358	4	FSM	ENSMUSG00000029401.9	ENSMUST00000031347.8	1391	4	22	11	22	-11	multi-exon	FALSE	canonical	3	23	junction_1	3.55902608401044	106	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGTGGGAATACAACGCA	NA	False	NA	NA	False	NA	NA	NA	124616407	124601338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_124601875_124606649_124606755_124607760_124607913_124615842
71109	chr4	-	2041	2	Antisense	novelGene_ENSMUSG00000041235.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGCCATCTTCTTCTAACA	NA	False	NA	NA	False	NA	NA	NA	8785746	8751512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_8753147_8785339
71110	chr5	-	1003	1	Intergenic	novelGene_674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCACCCCAACACCAGCAA	NA	False	NA	NA	False	NA	NA	NA	25880406	25879403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_25879400_25880400
71111	chr7	-	919	4	ISM	ENSMUSG00000006313.6	ENSMUST00000006476.6	1421	8	5877	-8	5877	8	3prime_fragment	FALSE	canonical	3	18	junction_3	10.6144555520604	1	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGTTCTGTTCTG	7784	False	NA	NA	False	NA	NA	NA	30306395	30302508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299
71113	chr13	-	863	8	NNC	ENSMUSG00000034789.9	novel	1168	8	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_7	201.457343436495	82	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCTGTGTGCACTGGGT	6434	False	NA	NA	False	NA	NA	NA	55469766	55467698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55468028_55468124_55468188_55468315_55468367_55468557_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469662
71114	chr8	-	768	4	FSM	ENSMUSG00000031609.4	ENSMUST00000034022.4	1178	4	407	3	407	-3	multi-exon	FALSE	canonical	3	1617	junction_3	52.2961651451508	219	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATAGCTGCTTCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	57940487	57935743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_57936085_57938075_57938175_57938543_57938670_57940285
71115	chr2	-	278	1	ISM	ENSMUSG00000026646.17	ENSMUST00000027956.9	4327	6	17678	1261	17066	504	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGATTAAAAAAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	3458390	3458112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_3458100_3458400
71116	chr2	-	398	1	ISM	ENSMUSG00000026646.17	ENSMUST00000027956.9	4327	6	18815	4	18203	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTTCCTGTTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	3457253	3456855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_3456900_3457300
71117	chr10	+	811	4	ISM	ENSMUSG00000020331.10	ENSMUST00000099513.8	3195	8	7848	5162	7848	-5162	internal_fragment	FALSE	canonical	3	76	junction_2	1.63299316185545	1	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGAGGACAGCATCCTT	NA	False	NA	NA	False	NA	NA	NA	79560315	79566780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79560646_79561980_79562143_79564726_79564946_79566680
71118	chr10	+	903	1	Intergenic	novelGene_3487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTGTGTGTTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	78517122	78518025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_78517100_78518000
71119	chr12	+	584	1	NIC	ENSMUSG00000042734.7	novel	4754	4	NA	NA	32034	-955	mono-exon	FALSE	NA	NA	NA	NA	NA	24	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCTGGGCGAACTAATGCT	1056	False	NA	NA	False	NA	NA	NA	81710176	81710760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_81710200_81710800
71121	chr12	+	1979	1	Antisense	novelGene_ENSMUSG00000097488.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAATTTTATTTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	86339463	86341442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_86339500_86341400
71122	chr3	-	1594	2	ISM	ENSMUSG00000028035.14	ENSMUST00000050073.13	2464	3	7127	136	7127	-109	3prime_fragment	FALSE	canonical	3	15	junction_1	0	12	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACTGTCTTCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	151892355	151889727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_151891018_151892051
71123	chr14	+	2064	1	Intergenic	novelGene_546	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGGTCACTCCTGGATT	NA	False	NA	NA	False	NA	NA	NA	40620915	40622979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_40620900_40623000
71124	chr5	+	2044	5	FSM	ENSMUSG00000059991.8	ENSMUST00000071782.8	2536	5	489	3	489	-3	multi-exon	FALSE	canonical	3	146	junction_1	16.768646337734	100	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTTGAGCTTCTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	144483200	144494285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_144483294_144484928_144485146_144490209_144490455_144492106_144492287_144492976
71125	chr4	+	892	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	472	0	-57	0	multi-exon	FALSE	canonical	3	244	junction_1	47.5	211	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTCTCACTGGTTAC	7073	False	NA	NA	False	NA	NA	NA	126042267	126043668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_126042425_126042743_126042839_126043028
71126	chr9	-	829	5	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-117	5251	-50	96	5prime_fragment	FALSE	canonical	3	85	junction_4	8.07774721070176	283	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACGACTCAGAGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	53448090	53438397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
71127	chr16	+	1392	1	NIC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	1	-11866	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGTATGTAGGTATCC	NA	False	NA	NA	False	NA	NA	NA	35892454	35893846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_35892500_35893800
71128	chr5	+	1285	4	Antisense	novelGene_ENSMUSG00000004415.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	0.816496580927726	70	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATAAACCCTGTCCTCC	NA	False	NA	NA	False	NA	NA	NA	136766575	136778869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_136766691_136774222_136774384_136777293_136777375_136777941
71129	chr6	-	936	1	Antisense	novelGene_ENSMUSG00000030276.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGGTTGGTGATATAGCC	9395	False	NA	NA	False	NA	NA	NA	113368476	113367540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113367500_113368500
71131	chr18	+	1883	12	Antisense	novelGene_ENSMUSG00000024376.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	119	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGAGTTTTCTTGATAA	NA	False	NA	NA	False	NA	NA	NA	33929581	33992627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_33930521_33931560_33931643_33931743_33931854_33934622_33934702_33935569_33935616_33943271_33943392_33957511_33957592_33958460_33958510_33961731_33961862_33965645_33965742_33987291_33987402_33992585
71132	chr7	-	2069	1	ISM	ENSMUSG00000030557.18	ENSMUST00000156690.8	5538	12	139531	96	32835	-96	mono-exon	FALSE	NA	NA	NA	NA	NA	21	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTATCAAATGGTTAAG	NA	False	NA	NA	False	NA	NA	NA	66883075	66881006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_66881000_66883100
71133	chr2	+	1596	6	ISM	ENSMUSG00000035183.15	ENSMUST00000070353.4	1954	9	-93	4791	-93	660	5prime_fragment	FALSE	canonical	3	24	junction_1	1.46969384566991	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGGGAGATGCACATGG	NA	False	NA	NA	False	NA	NA	NA	124909950	124925806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950
71134	chr11	+	1129	2	FSM	ENSMUSG00000050538.9	ENSMUST00000170806.2	1118	2	6	-17	6	17	multi-exon	FALSE	canonical	3	6	junction_1	0	42	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAATTTCTTGTAATAA	5335	False	NA	NA	False	NA	NA	NA	97732150	97733886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97732403_97733009
71135	chr3	-	1080	8	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	-72	intron_retention	FALSE	canonical	2	10	junction_5	195.044840475	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCACGCTGTTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	95662183	95654932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658297_95660318_95660443_95661630_95661828_95662069
71136	chr5	-	802	5	ISM	ENSMUSG00000029406.16	ENSMUST00000159677.8	1690	10	48994	363	-492	-190	internal_fragment	FALSE	canonical	3	21	junction_2	5.59016994374947	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTACCTACCCTGAGAC	NA	False	NA	NA	False	NA	NA	NA	124278816	124271230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_124271302_124271427_124271533_124273210_124273307_124274164_124274465_124278586
71137	chr11	-	791	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	25	-3	25	3	multi-exon	FALSE	canonical	3	42	junction_1	0	210	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGGGGCTTTTGTGTTGT	984	False	NA	NA	False	NA	NA	NA	120348869	120347428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120347989_120348638
71138	chr5	+	1582	1	NIC	ENSMUSG00000029642.12	novel	1350	4	NA	NA	1691	-6434	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATGACCTAAAGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	147039664	147041246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_147039700_147041200
71139	chr13	+	1419	1	Intergenic	novelGene_1384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAACTGGCAGGTGTTCT	2350	False	NA	NA	False	NA	NA	NA	55452341	55453760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_55452300_55453800
71140	chr7	-	1462	2	NIC	ENSMUSG00000050605.18	novel	747	4	NA	NA	49	319	intron_retention	FALSE	canonical	3	38	junction_1	0	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCCCCAAAGATTTATT	NA	False	NA	NA	False	NA	NA	NA	23999013	23996734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_23997801_23998617
71144	chr2	+	667	1	FSM	ENSMUSG00000074918.5	ENSMUST00000149978.2	3053	1	2361	25	2361	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	14	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACATTCTAAGAACTCTG	NA	False	NA	NA	False	NA	NA	NA	118578599	118579266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118578600_118579300
71145	chr5	+	1303	6	NNC	ENSMUSG00000029602.12	novel	486	2	NA	NA	-3785	-7	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	10.6282642044691	55	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTAGCCGTGACGTGTT	194	False	NA	NA	False	NA	NA	NA	120812872	120817655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_120813041_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
71147	chr4	-	857	7	NNC	ENSMUSG00000028622.12	novel	1498	7	NA	NA	78	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.488763761229	1	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTGCATTGGTGTGAGA	NA	False	NA	NA	False	NA	NA	NA	106921889	106913087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_106913298_106914568_106914676_106914724_106914773_106917679_106917830_106919079_106919259_106921588_106921646_106921783
71148	chr11	+	1080	5	NNC	ENSMUSG00000002058.14	novel	1329	5	NA	NA	4	-15	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	102.793482283655	99	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGGTGCGGCCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	78234327	78239975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78234399_78238043_78238158_78238622_78238726_78238912_78239086_78239356
71149	chr4	+	1762	3	NNC	ENSMUSG00000036052.15	novel	3093	4	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.5	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCCTCTGCGCAGAAGCA	25	True	NA	NA	False	NA	NA	NA	42949917	42958729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_42949977_42956836_42957128_42957317
71150	chr1	+	1519	11	Antisense	novelGene_ENSMUSG00000038733.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	8	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGGTATTCCAGGTACTT	NA	False	NA	NA	False	NA	NA	NA	181007979	181030678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_181008213_181008867_181009055_181010333_181010466_181011293_181011366_181011811_181011961_181013511_181013633_181015170_181015311_181019324_181019464_181025139_181025297_181026411_181026507_181030584
71151	chr5	+	1289	9	FSM	ENSMUSG00000029082.18	ENSMUST00000101237.8	2856	9	-6	1573	0	3	multi-exon	FALSE	canonical	3	10	junction_6	2.97647022494766	54	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTATTTTTTATTTTCTG	NA	False	NA	NA	False	NA	NA	NA	43976226	43999755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_43976436_43977819_43977947_43978951_43979088_43979608_43979692_43982669_43982747_43983605_43983699_43994802_43994890_43997772_43997833_43999338
71152	chr14	+	523	3	NNC	ENSMUSG00000063787.5	novel	616	3	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	976.5	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	NA	False	NA	NA	NA	20753115	20754493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_20753266_20753357_20753434_20754196
71154	chr9	+	653	1	ISM	ENSMUSG00000070315.13	ENSMUST00000161136.2	834	2	8039	11	8039	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATAAAAGCATGGCAGCTT	NA	False	NA	NA	False	NA	NA	NA	35037529	35038182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_35037500_35038200
71155	chr19	-	2787	2	Antisense	novelGene_ENSMUSG00000037847.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	100	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGAGGGCGTGGCTACT	NA	False	NA	NA	False	NA	NA	NA	18616102	18609318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_18609445_18613441
71158	chr13	+	1135	5	ISM	ENSMUSG00000025875.15	ENSMUST00000145574.2	718	7	259	11	259	-4	intron_retention	FALSE	canonical	3	389	junction_4	10.7092249953019	94	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAAAACAGTGGTGGTT	NA	False	NA	NA	False	NA	NA	NA	54940942	54944577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
71159	chr5	+	226	4	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-22	-259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	10371.0459774637	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCTTAATTTGAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115698819_115701447
71160	chr4	-	1102	5	ISM	ENSMUSG00000039813.15	ENSMUST00000084621.12	4315	13	-7	24018	-7	4172	5prime_fragment	FALSE	canonical	2	8	junction_4	5.16599457994296	15	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGAGAAGGTGGCGGCCT	-21	True	NA	NA	False	NA	NA	NA	46650216	46628407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_46628538_46629875_46630010_46637588_46637737_46646116_46646259_46649668
71162	chr4	-	1305	3	NNC	ENSMUSG00000045573.10	novel	721	3	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0	22	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGATATTGTAAGAACTG	-4	True	NA	NA	False	NA	NA	NA	4138826	4133535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_4134508_4138005_4138147_4138634
71163	chr4	+	314	1	Intergenic	novelGene_1823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAATAAGATAGCTGGG	8252	False	NA	NA	False	NA	NA	NA	40861626	40861940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_40861600_40861900
71164	chr18	+	1488	1	Antisense	novelGene_ENSMUSG00000024645.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCATCCCGGGAAACAAC	NA	False	NA	NA	False	NA	NA	NA	84968144	84969632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_84968100_84969600
71166	chr14	-	1408	7	ISM	ENSMUSG00000039308.7	ENSMUST00000047490.6	3305	13	3234	-3	-1507	1	3prime_fragment	FALSE	canonical	3	60	junction_1	5.58022301426107	18	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGTTTTGTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	20777161	20773803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061
71167	chr13	-	909	2	NNC	ENSMUSG00000096175.4	novel	1374	3	NA	NA	-744	56	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	105	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGAATATTGTGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	120375032	120373574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_120374317_120374865
71168	chr11	+	315	1	Intergenic	novelGene_2264	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGCCCGAGGAAGCGCAC	NA	False	NA	NA	False	NA	NA	NA	50806596	50806911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_50806600_50806900
71169	chr11	+	1797	1	Intergenic	novelGene_2265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTATTGCTCTTTACTG	NA	False	NA	NA	False	NA	NA	NA	50807161	50808958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_50807200_50809000
71170	chr12	+	1481	2	ISM	ENSMUSG00000020583.5	ENSMUST00000020899.5	3014	8	0	18873	0	-18873	5prime_fragment	FALSE	canonical	3	19	junction_1	0	4	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTCTCCTGCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	8997928	9003155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_8998252_9001997
71171	chr17	+	599	4	Antisense	novelGene_ENSMUSG00000038045.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAACAGTAAAGAGCAAAC	NA	False	NA	NA	False	NA	NA	NA	79192332	79202528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_79192641_79198269_79198370_79201971_79202099_79202464
71172	chr14	-	1222	2	Antisense	novelGene_ENSMUSG00000022010.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	11	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAGAAGATTCTGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	76732429	76719964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76721156_76732398
71173	chr11	-	734	3	NNC	ENSMUSG00000060923.6	novel	863	4	NA	NA	122	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	14.5	258	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTACCTTTGTGTACTGT	NA	False	NA	NA	False	NA	NA	NA	30599465	30455996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_30456440_30582207_30582334_30599300
71174	chr5	+	770	1	NIC	ENSMUSG00000029171.13	novel	2369	14	NA	NA	4115	-10483	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAGATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	64254407	64255177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_64254400_64255200
71176	chr9	-	1093	1	Antisense	novelGene_ENSMUSG00000037286.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCTGAAAAACAAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	100731945	100730852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_100730900_100731900
71177	chr5	-	1914	5	NIC	ENSMUSG00000049606.17	novel	5785	6	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	14	junction_3	41.475896614781	41	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATTACAGTGCCTCTAA	NA	False	NA	NA	False	NA	NA	NA	106844410	106764614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_106766295_106767405_106767509_106814650_106814712_106843508_106843566_106844397
71179	chr8	-	473	2	ISM	ENSMUSG00000034911.9	ENSMUST00000049184.9	2438	13	9824	-2	3373	2	3prime_fragment	FALSE	canonical	3	5	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTTTGTCCCTGGCACC	NA	False	NA	NA	False	NA	NA	NA	71838605	71838010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71838438_71838559
71180	chr2	-	1612	10	Antisense	novelGene_ENSMUSG00000005102.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	34	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGGTGTCCCTGGCACC	NA	False	NA	NA	False	NA	NA	NA	118279450	118261466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_118261705_118262691_118262760_118265101_118265196_118266652_118266765_118269444_118269550_118271638_118271699_118272493_118272574_118273603_118273708_118276740_118276791_118278749
71184	chr11	+	2484	2	Intergenic	novelGene_2433	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCCGTGCCTGCTGCT	NA	False	NA	NA	False	NA	NA	NA	84521697	84524227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_84522816_84522861
71185	chr8	+	1448	7	NNC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	-2	-3146	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	19.1434642168606	2	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGATCCTAAATTAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	13338206	13350939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13350781
71186	chr8	-	732	1	FSM	ENSMUSG00000063412.5	ENSMUST00000080152.5	736	1	22	-18	22	18	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34578869	34578137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_34578100_34578900
71187	chr11	-	638	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	2	10	2	-10	multi-exon	FALSE	canonical	3	20	junction_1	0	111	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTACTTATTTACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	76070462	76067794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_76068209_76070238
71188	chr5	+	795	1	NIC	ENSMUSG00000029176.14	novel	3854	28	NA	NA	331	4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATACTCTGTTCCATCCT	NA	False	NA	NA	False	NA	NA	NA	53023285	53024080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_53023300_53024100
71189	chr5	+	1307	1	FSM	ENSMUSG00000049285.5	ENSMUST00000057773.5	1308	1	-3	4	-3	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	28	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATACTGTCCTGATGTAA	5028	False	NA	NA	False	NA	NA	NA	138192572	138193879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138192600_138193900
71190	chr10	-	731	1	ISM	ENSMUSG00000048696.12	ENSMUST00000105350.3	3266	2	6558	16	886	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	41	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCCTATATGTAAGCGC	NA	False	NA	NA	False	NA	NA	NA	80216935	80216204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_80216200_80216900
71191	chr2	+	1675	5	NNC	ENSMUSG00000027394.14	novel	4567	7	NA	NA	111	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	38.610231804536	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCCCTGGCTCCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	128908015	128931687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128908278_128917775_128918009_128923129_128923266_128923893_128924164_128930913
71192	chr16	+	1258	4	ISM	ENSMUSG00000022877.10	ENSMUST00000023590.9	1734	7	4969	6	4941	-6	3prime_fragment	FALSE	canonical	3	7	junction_3	1.24721912892465	25	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAGTGTAACTACTTTA	NA	False	NA	NA	False	NA	NA	NA	22774790	22780400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22774957_22776216_22776298_22777910_22778013_22779491
71193	chr7	-	847	1	Antisense	novelGene_ENSMUSG00000030523.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTCTGCTGTGAGGTGA	NA	False	NA	NA	False	NA	NA	NA	63836684	63835837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_63835800_63836700
71195	chr11	-	218	3	ISM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	6970	300	1175	-299	3prime_fragment	FALSE	canonical	3	18443	junction_2	655	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTAAACAGTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	33106102	33102809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002
71197	chr19	+	1641	4	FSM	ENSMUSG00000024983.11	ENSMUST00000226069.2	1599	4	-41	-1	-9	1	multi-exon	FALSE	canonical	3	4	junction_3	51.1620519091597	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCATCTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	55304717	55355936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55354724
71198	chr15	-	1880	1	Antisense	novelGene_ENSMUSG00000022150.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTCCTTCACTCTTCG	NA	False	NA	NA	False	NA	NA	NA	6458215	6456335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_6456300_6458200
71200	chr1	+	991	7	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	-5198	188	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_2	30.7064958744707	203	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACTCTGGAGTATTCGAA	NA	False	NA	NA	False	NA	NA	NA	21318546	21335433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_21318604_21319974_21320083_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
71201	chr7	+	903	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	-69	2	-69	-2	multi-exon	FALSE	canonical	3	580	junction_2	14.0423466699836	765	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTGTCTGAGCCCTC	NA	False	NA	NA	False	NA	NA	NA	16472265	16483217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
71202	chr16	-	1477	1	Antisense	novelGene_ENSMUSG00000022811.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTATCCTGTAAAAGTAT	8175	False	NA	NA	False	NA	NA	NA	33243175	33241698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_33241700_33243200
71203	chr2	-	1249	9	ISM	ENSMUSG00000035236.18	ENSMUST00000157038.8	1233	10	-8	3146	-4	81	5prime_fragment	FALSE	canonical	2	6	junction_1	3.37036719067819	7	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACAAAGTGTCTTCACT	NA	False	NA	NA	False	NA	NA	NA	39080750	38996639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_38997085_38997219_38997319_38998318_38998416_39011122_39011222_39013015_39013103_39015101_39015198_39022966_39023099_39080000_39080046_39080601
71206	chr9	+	1718	12	FSM	ENSMUSG00000019039.15	ENSMUST00000019183.14	1746	12	8	20	8	-17	multi-exon	FALSE	canonical	3	83	junction_8	26.2473926292634	273	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATACAGTTTCATCCTAT	NA	False	NA	NA	False	NA	NA	NA	108447092	108449953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
71208	chr5	-	1003	1	ISM	ENSMUSG00000015879.9	ENSMUST00000198680.2	5911	2	5757	78	5757	-78	mono-exon	FALSE	NA	NA	NA	NA	NA	12	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGCATTGTCAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	45688127	45687124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_45687100_45688100
71210	chr10	+	479	3	ISM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	715	-22	715	0	3prime_fragment	FALSE	canonical	3	16591	junction_2	626	25	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGCCCATTTA	7661	False	NA	NA	False	NA	NA	NA	75772121	75773581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_75772280_75773140_75773289_75773408
71213	chr17	+	1002	4	NIC	ENSMUSG00000044279.16	novel	778	5	NA	NA	-9	-1	intron_retention	FALSE	canonical	3	51	junction_3	76.6130247122221	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAAGATTTTAGCTGTA	1569	False	NA	NA	False	NA	NA	NA	57369273	57372911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57369767_57370636_57370699_57372089_57372234_57372608
71214	chr9	-	1928	10	ISM	ENSMUSG00000032066.10	ENSMUST00000119103.2	2118	12	8921	10	8921	-10	3prime_fragment	TRUE	canonical	0	0	junction_4	1.47405546238018	11	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAGGTAATTATGATCAT	NA	False	NA	NA	False	NA	NA	NA	50457560	50444396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_50444820_50445909_50446021_50446777_50446961_50447530_50447669_50450145_50450314_50451396_50451558_50452342_50452472_50455756_50455860_50456646_50456763_50457164
71215	chr7	-	472	3	NNC	ENSMUSG00000060591.10	novel	655	2	NA	NA	12	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4787	23	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCACTGTTCTCTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	140535888	140534742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140534847_140535024_140535087_140535582
71216	chr12	-	2900	1	Intergenic	novelGene_4347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAATAAATAAATAAAAGT	NA	False	NA	NA	False	NA	NA	NA	40272680	40269780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_40269800_40272700
71217	chr10	-	671	4	ISM	ENSMUSG00000020003.17	ENSMUST00000166511.9	1047	9	20525	-289	-17448	246	3prime_fragment	FALSE	canonical	3	143	junction_1	3.39934634239519	53	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACATTTCTTGATCATATA	NA	False	NA	NA	False	NA	NA	NA	19762868	19736288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_19736741_19745039_19745140_19760523_19760580_19762805
71218	chr7	+	674	7	NNC	ENSMUSG00000078765.12	novel	564	7	NA	NA	0	43	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	219.58932629393	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATATAATCTGTTCGACA	NA	False	NA	NA	False	NA	NA	NA	30262766	30264712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263910_30264033_30264127_30264224_30264519
71219	chr1	+	1168	3	Antisense	novelGene_ENSMUSG00000045658.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	18	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTAGAAGAAACAAAATATC	6270	False	NA	NA	False	NA	NA	NA	84283162	84289405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84284230_84287534_84287599_84289368
71220	chr17	-	827	6	Antisense	novelGene_ENSMUSG00000025731.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1042	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGCTGTGGTCCAGCTCC	3121	False	NA	NA	False	NA	NA	NA	26096137	26094457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_26094699_26094931_26095095_26095191_26095252_26095466_26095532_26095629_26095713_26095922
71221	chr11	-	930	2	NNC	ENSMUSG00000034993.8	novel	2766	6	NA	NA	6025	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCAAACCCTGAGTCCT	NA	False	NA	NA	False	NA	NA	NA	101351031	101349585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_101349909_101350424
71222	chr19	-	846	8	NNC	ENSMUSG00000024824.8	novel	710	7	NA	NA	5	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	192.595060016754	1	21	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCAGCCAGTGCCTCAGA	5977	False	NA	NA	False	NA	NA	NA	4251656	4247144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4247253_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4250985_4251327_4251399_4251481
71223	chr8	+	1111	2	NIC	ENSMUSG00000097248.10	novel	1125	7	NA	NA	-7173	-23	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	0	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAATAAACTACAATAATAC	NA	False	NA	NA	False	NA	NA	NA	88222366	88230577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_88222490_88229589
71225	chr8	+	1382	1	FSM	ENSMUSG00000098211.3	ENSMUST00000182145.3	1402	1	26	-6	26	6	mono-exon	FALSE	NA	NA	NA	NA	NA	22	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGTCTGGAGAGATGGC	NA	False	NA	NA	False	NA	NA	NA	122268844	122270226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_122268800_122270200
71226	chr10	-	1545	1	Antisense	novelGene_ENSMUSG00000061315.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTTTTGGAGGTCAT	9446	False	NA	NA	False	NA	NA	NA	127879273	127877728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127877700_127879300
71228	chrX	+	960	8	NNC	ENSMUSG00000084330.2	novel	434	5	NA	NA	-2224	5366	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	2.43276948084663	62	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTGTCCTGAGTTGCAC	NA	False	NA	NA	False	NA	NA	NA	134625522	134635589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134625674_134627458_134627605_134628012_134628123_134628783_134628921_134629024_134629068_134629492_134629566_134635168_134635227_134635347
71229	chr10	-	2695	1	Genic_Genomic	ENSMUSG00000020121.16	novel	NA	NA	NA	NA	-738	1492	mono-exon	FALSE	NA	NA	NA	NA	NA	2	85	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTACATAGAAAGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	121643747	121641052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_121641100_121643700
71230	chr11	-	1358	1	Intergenic	novelGene_2455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTGCTCTAAGCCTAAAA	NA	False	NA	NA	False	NA	NA	NA	90559966	90558608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_90558600_90560000
71231	chr5	-	1106	3	FSM	ENSMUSG00000059325.15	ENSMUST00000113453.9	1113	3	7	0	7	0	multi-exon	FALSE	canonical	3	24	junction_1	1.5	25	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	3150	False	NA	NA	False	NA	NA	NA	77243117	77234834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_77235664_77242712_77242870_77242997
71232	chr7	+	914	1	ISM	ENSMUSG00000053877.13	ENSMUST00000187040.7	10654	34	47253	35	26511	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGCATAATAAACTTA	NA	False	NA	NA	False	NA	NA	NA	127159442	127160356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127159400_127160400
71234	chr4	-	1139	2	FSM	ENSMUSG00000038422.3	ENSMUST00000037820.3	1205	2	12	54	12	-54	multi-exon	FALSE	canonical	3	14	junction_1	0	54	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCATAGAACTGCGAGGG	NA	False	NA	NA	False	NA	NA	NA	62420501	62417298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62418331_62420394
71237	chr17	-	442	6	ISM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	94	446	-11	191	5prime_fragment	FALSE	canonical	3	300	junction_5	258.252124870252	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAACTTTGAGATTTTC	9346	False	NA	NA	False	NA	NA	NA	27158449	27157391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
71238	chr9	-	766	3	NNC	ENSMUSG00000032040.16	novel	1274	6	NA	NA	-15	-48684	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4	27	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGACATGGATGTGCCT	NA	False	NA	NA	False	NA	NA	NA	35087304	35086286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35086353_35086396_35086859_35087066
71239	chr17	-	1918	1	Intergenic	novelGene_115	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGCCTTCTCTATCAAGCT	NA	False	NA	NA	False	NA	NA	NA	29112873	29110955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_29111000_29112900
71240	chr17	-	912	3	Intergenic	novelGene_63	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGAGACAGTGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	17731895	17724949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17725210_17730734_17730908_17731416
71241	chr9	+	1431	5	FSM	ENSMUSG00000048752.8	ENSMUST00000051097.6	1456	5	22	3	22	-2	multi-exon	FALSE	canonical	3	8	junction_3	2.54950975679639	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTCCTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	110687056	110693694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_110687528_110690327_110690491_110691329_110691614_110692797_110692965_110693348
71243	chr2	-	2537	1	Intergenic	novelGene_2701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATCCACTGTGTAGTCC	NA	False	NA	NA	False	NA	NA	NA	126516611	126514074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_126514100_126516600
71245	chr6	+	1607	4	FSM	ENSMUSG00000038836.16	ENSMUST00000115014.8	805	4	-159	-643	-118	568	multi-exon	FALSE	canonical	2	5	junction_3	0.816496580927726	20	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATCTGTACTTATTACAG	1957	False	NA	NA	False	NA	NA	NA	34757664	34763222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34757995_34759034_34759154_34760504_34760566_34762125
71246	chr3	-	478	3	FSM	ENSMUSG00000028062.16	ENSMUST00000156421.2	438	3	-46	6	-46	-6	multi-exon	FALSE	canonical	3	32	junction_2	1321	50	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTTACCTGTGTCTCAC	1062	False	NA	NA	False	NA	NA	NA	88460246	88457133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88457312_88458002_88458093_88460036
71247	chr9	+	449	3	ISM	ENSMUSG00000006241.17	ENSMUST00000006403.7	1531	13	170	6338	7	-471	5prime_fragment	FALSE	canonical	2	4	junction_1	0	1	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGCCAAGGTTATCCCCA	3296	False	NA	NA	False	NA	NA	NA	21838936	21840830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21839025_21840388_21840523_21840603
71248	chr9	+	781	8	ISM	ENSMUSG00000006241.17	ENSMUST00000216710.2	1126	9	4084	234	4053	-234	3prime_fragment	FALSE	canonical	2	3	junction_6	2.1189138534559	3	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTACAGACCCTACTCAGCC	7373	False	NA	NA	False	NA	NA	NA	21843013	21846923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21843084_21843160_21843243_21844099_21844287_21844841_21844910_21844991_21845069_21845413_21845530_21845730_21845814_21846825
71251	chr5	-	2365	1	FSM	ENSMUSG00000106870.2	ENSMUST00000201581.2	1903	1	-463	1	-463	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTTCCCCATTATCCCT	NA	False	NA	NA	False	NA	NA	NA	93334080	93331715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_93331700_93334100
71252	chr7	-	1027	2	FSM	ENSMUSG00000003872.10	ENSMUST00000211416.2	405	2	-626	4	5	-4	multi-exon	FALSE	canonical	3	8	junction_1	0	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCACCGAGTGTCTTGTG	9297	False	NA	NA	False	NA	NA	NA	45018652	45017320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45017423_45017727
71253	chr13	+	1903	6	ISM	ENSMUSG00000039004.7	ENSMUST00000171970.3	3593	7	124584	132	75246	-132	3prime_fragment	FALSE	canonical	2	5	junction_3	0.8	9	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAACTGTACTTACAGCCT	NA	False	NA	NA	False	NA	NA	NA	38653666	38684146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_38653783_38668866_38669016_38669714_38669913_38681270_38681348_38682692_38682804_38682894
71254	chr17	+	1327	4	ISM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	1352	620	742	-620	3prime_fragment	FALSE	canonical	3	102	junction_1	10.6562449087639	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTTTGATGCAGAAAAA	9275	False	NA	NA	False	NA	NA	NA	35151580	35154277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35151805_35152978_35153162_35153258_35153482_35153580
71255	chr7	-	1456	1	Antisense	novelGene_ENSMUSG00000062031.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAAAGAGGGTGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	140523068	140521612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_140521600_140523100
71256	chr5	+	2616	2	Genic_Genomic	ENSMUSG00000029221.16	novel	5648	17	NA	NA	5147	-2091	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	106	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTGGTCATTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	67494588	67497415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_67495934_67496144
71258	chr5	-	1606	12	Antisense	novelGene_ENSMUSG00000107263.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCTCGGCCGTGCCTCAA	NA	False	NA	NA	False	NA	NA	NA	116064631	115983297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115983361_115984405_115984524_115989208_115989353_115997254_115997430_116001011_116001116_116011907_116012052_116013945_116014037_116022922_116023127_116024710_116024865_116046693_116046881_116063452_116063563_116064519
71259	chr17	+	1030	4	NNC	ENSMUSG00000092586.9	novel	598	4	NA	NA	-30	-16	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	2.16024689946929	21	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAGTGTCTAATAAGCGT	NA	False	NA	NA	False	NA	NA	NA	35284333	35289010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35284420_35286302_35286421_35287842_35287954_35288295
71260	chr7	-	2095	1	Antisense	novelGene_ENSMUSG00000030811.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGAGCTTTGTTTAGTG	376	False	NA	NA	False	NA	NA	NA	127345219	127343124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_127343100_127345200
71262	chr11	+	1698	1	Intergenic	novelGene_2240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTAGCCAGCAGTTAAT	NA	False	NA	NA	False	NA	NA	NA	30722876	30724574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_30722900_30724600
71266	chr9	-	1007	9	ISM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	12	7391	-1	187	5prime_fragment	FALSE	canonical	3	103	junction_7	9.65336728815391	12	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCACCCGTAGTGAGATC	NA	False	NA	NA	False	NA	NA	NA	21199253	21192143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
71267	chr15	-	688	1	Intergenic	novelGene_3209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCGGCAAAAGGATTACTG	NA	False	NA	NA	False	NA	NA	NA	8138729	8138041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_8138000_8138700
71268	chr15	-	262	2	Intergenic	novelGene_3208	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCCAGCATTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	8138041	8133013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_8133247_8138012
71270	chr11	-	966	1	ISM	ENSMUSG00000072847.5	ENSMUST00000101077.3	2315	2	1096	640	1096	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACATCTGGCTATTTGA	5062	False	NA	NA	False	NA	NA	NA	61756999	61756033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_61756000_61757000
71271	chr7	+	2423	1	Intergenic	novelGene_2991	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	92	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCGCACGCCTGCGTTC	NA	False	NA	NA	False	NA	NA	NA	89627053	89629476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_89627100_89629500
71272	chr17	+	494	2	NNC	ENSMUSG00000092558.4	novel	405	2	NA	NA	-10	69	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACAAGTGTGGGTGCTTA	NA	False	NA	NA	False	NA	NA	NA	47922522	47924289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47922615_47923887
71274	chr2	+	828	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	1	2632	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.2621655221252	337	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACTGAGCAATCATTAAA	NA	False	NA	NA	False	NA	NA	NA	162232733	162238497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162232958_162233218_162233320_162236359_162236484_162238066_162238330_162238381
71276	chr9	+	520	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	57	0	1	0	multi-exon	FALSE	canonical	3	377	junction_1	21	1705	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	NA	False	NA	NA	NA	121539451	121541987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_121539538_121539704_121539782_121541630
71277	chrX	-	1247	3	FSM	ENSMUSG00000041353.13	ENSMUST00000163233.2	1256	3	10	-1	10	1	multi-exon	FALSE	canonical	3	16	junction_2	123	42	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATATCTGACTTGAGAG	NA	False	NA	NA	False	NA	NA	NA	149223891	149191578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149192597_149203337_149203438_149223762
71278	chr2	-	1350	3	FSM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	-6	-750	-6	-33	multi-exon	FALSE	canonical	3	10	junction_2	33.5	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACCCAGTTAATAAAAATT	4195	False	NA	NA	False	NA	NA	NA	170191666	170189100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_170190069_170191101_170191384_170191566
71279	chr4	+	816	4	FSM	ENSMUSG00000028751.14	ENSMUST00000105804.2	786	4	-30	0	-30	0	multi-exon	FALSE	canonical	3	8	junction_1	6.79869268479038	62	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138606640	138610128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_138606808_138607661_138607801_138607980_138608088_138609725
71280	chr17	+	1042	4	ISM	ENSMUSG00000024334.10	ENSMUST00000025192.8	1088	5	1349	1	1267	0	3prime_fragment	FALSE	canonical	2	3	junction_1	6.79869268479038	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTGTGTCCTTTTCAC	548	False	NA	NA	False	NA	NA	NA	34312662	34314207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34313056_34313281_34313564_34313656_34313793_34313976
71281	chr12	-	1135	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	-55	621	33	-10	multi-exon	FALSE	canonical	3	43	junction_6	78.2148039411693	192	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTTTCTGGACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	21336153	21320714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
71282	chr14	-	930	6	FSM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	42	9	42	-3	multi-exon	FALSE	canonical	3	266	junction_1	9.09065454189081	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACGCGACCTTCTGAGCA	NA	False	NA	NA	False	NA	NA	NA	21898920	21897255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
71283	chr11	+	1684	3	Antisense	novelGene_ENSMUSG00000086646.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTGTGTGGCAGGGGA	NA	False	NA	NA	False	NA	NA	NA	51079769	51105045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_51081137_51089400_51089546_51104873
71285	chr9	-	802	8	NNC	ENSMUSG00000032413.13	novel	5813	24	NA	NA	39	-7971	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	17.5324771524745	16	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTATTTAGTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	96513550	96461911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96462029_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
71286	chr13	-	807	1	ISM	ENSMUSG00000113170.2	ENSMUST00000222088.2	2093	2	996	1118	996	-1118	mono-exon	FALSE	NA	NA	NA	NA	NA	15	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGTGTCATCGCTTGC	NA	False	NA	NA	False	NA	NA	NA	35058419	35057612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_35057600_35058400
71287	chr9	-	893	3	Intergenic	novelGene_1131	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	70	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCCAGAATCCCTATCGG	NA	False	NA	NA	False	NA	NA	NA	95409430	95405393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_95405466_95406451_95406764_95408921
71288	chr1	-	1061	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	55	70	0	-70	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTTTAATGTTAATAGC	NA	False	NA	NA	False	NA	NA	NA	72323418	72298400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
71289	chr18	-	2308	2	ISM	ENSMUSG00000043079.18	ENSMUST00000130360.2	5159	3	-229	8824	-229	1295	5prime_fragment	FALSE	canonical	0	0	junction_1	0	4	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTCACCCCGTATCCAG	NA	False	NA	NA	False	NA	NA	NA	60763154	60735885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_60737563_60762523
71290	chr15	+	1499	3	Antisense	novelGene_ENSMUSG00000022483.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	1	19	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGCATCCTTTGTTCTC	NA	False	NA	NA	False	NA	NA	NA	97891048	97895547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_97891628_97894006_97894135_97894755
71292	chr4	+	2075	5	FSM	ENSMUSG00000028214.14	ENSMUST00000108304.9	2006	5	-51	-18	-51	18	multi-exon	FALSE	canonical	1	1	junction_2	2.17944947177034	9	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATAAGACAAGTATGAGT	9567	False	NA	NA	False	NA	NA	NA	11704405	11714770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11704567_11705904_11706242_11711138_11711216_11711969_11712175_11713475
71293	chr5	+	579	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	55	4	-55	-1	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	5426	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATTTGAGTGGAAATGTC	NA	False	NA	NA	False	NA	NA	NA	100946547	100952333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
71295	chr9	-	905	7	NIC	ENSMUSG00000057933.11	novel	870	7	NA	NA	-3843	-4	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	12.0369800568452	119	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATATGCTCCTCATAAGT	NA	False	NA	NA	False	NA	NA	NA	78249877	78238303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78249768
71296	chrX	-	1881	1	Intergenic	novelGene_4074	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACATGTTTATTATATA	NA	False	NA	NA	False	NA	NA	NA	147585215	147583334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_147583300_147585200
71297	chr2	+	788	3	FSM	ENSMUSG00000027602.10	ENSMUST00000154596.2	826	3	40	-2	40	0	multi-exon	FALSE	canonical	3	438	junction_2	23	264	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTGCCTCCAGCTGCT	NA	False	NA	NA	False	NA	NA	NA	155118848	155119990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_155118934_155119017_155119125_155119394
71298	chrX	-	1050	7	NNC	ENSMUSG00000031157.11	novel	1104	7	NA	NA	6	-8	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_6	201.866636393657	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATATCCATGAGGCTTG	372	False	NA	NA	False	NA	NA	NA	7765432	7760765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765377
71299	chr4	+	855	4	NNC	ENSMUSG00000035212.15	novel	1898	4	NA	NA	4608	-9	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	278.879105627431	86	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACTGAAGGAGAGTTGCA	1483	False	NA	NA	False	NA	NA	NA	101509597	101516552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_101509672_101513305_101513493_101515034_101515195_101516118
71301	chr19	-	601	6	NIC	ENSMUSG00000036748.17	novel	762	7	NA	NA	223	-14	combination_of_known_junctions	FALSE	canonical	3	413	junction_2	312.434697176866	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCCCAAGTCAGGTATCCT	6097	False	NA	NA	False	NA	NA	NA	46326824	46319741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751
71303	chr12	+	1431	3	ISM	ENSMUSG00000034271.17	ENSMUST00000171754.3	1559	4	8117	11	5913	-11	3prime_fragment	FALSE	canonical	3	211	junction_2	0.5	76	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTACCCAGCTGCCTCG	NA	False	NA	NA	False	NA	NA	NA	85654908	85686641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_85655140_85678418_85678524_85685546
71304	chr8	+	711	2	ISM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	16108	197	16071	-197	3prime_fragment	FALSE	canonical	3	780	junction_1	0	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATCAAAATTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	22917484	22919484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_22917908_22919196
71305	chr6	+	1855	1	Antisense	novelGene_ENSMUSG00000092134.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGATCGTGGTAGGTTG	NA	False	NA	NA	False	NA	NA	NA	134220052	134221907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_134220100_134221900
71306	chr2	-	617	5	NNC	ENSMUSG00000027239.15	novel	773	5	NA	NA	35	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1058.12641021761	5	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCTTTTTTAATATATAA	NA	False	NA	NA	False	NA	NA	NA	91762090	91760165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91760461_91761162_91761197_91761440_91761600_91761716_91761794_91762038
71307	chr6	+	248	1	ISM	ENSMUSG00000042389.14	ENSMUST00000130425.8	638	4	9354	7	9312	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTAAGCAGGTCTCCCAG	8873	False	NA	NA	False	NA	NA	NA	115530978	115531226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_115531000_115531200
71308	chr11	+	618	3	NIC	ENSMUSG00000017716.16	novel	947	4	NA	NA	17	-202	combination_of_known_splicesites	FALSE	canonical	3	60	junction_1	950.5	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAAGGGACAGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	117740093	117746356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_117740288_117743488_117743607_117746050
71309	chr7	+	405	2	ISM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	1714	-44	150	4	3prime_fragment	FALSE	canonical	3	15019	junction_1	0	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTGCCTCTGTAGTGA	3037	False	NA	NA	False	NA	NA	NA	3708764	3709900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3708919_3709649
71310	chr13	-	648	3	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-17	-473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	236	156	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34314466	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311436_34313228_34313338_34314159
71311	chr17	+	931	8	NNC	ENSMUSG00000073468.13	novel	1049	8	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	282.101226585097	6	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2963	False	NA	NA	False	NA	NA	NA	8529973	8546274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_8530053_8537688_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
71313	chr3	-	701	3	NNC	ENSMUSG00000054379.8	novel	669	5	NA	NA	-20563	99	intron_retention	TRUE	non_canonical	0	0	junction_1	20	15	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGACGCACAGTTATT	NA	False	NA	NA	False	NA	NA	NA	103126854	103105442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103105861_103105899_103106121_103126792
71314	chr4	+	889	5	FSM	ENSMUSG00000028461.13	ENSMUST00000107922.3	865	5	-24	0	3	0	multi-exon	FALSE	canonical	3	315	junction_4	11.5433963806152	563	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-23	True	NA	NA	False	NA	NA	NA	43493364	43495921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508
71315	chr7	-	314	5	NIC	ENSMUSG00000041571.11	novel	736	6	NA	NA	56	-267	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	882.410052073298	1	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCTGTGGTCTTTCCTCG	NA	False	NA	NA	False	NA	NA	NA	15656271	15651399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_15651465_15653967_15654043_15654229_15654284_15654373_15654399_15656176
71316	chr11	+	1106	4	FSM	ENSMUSG00000020829.10	ENSMUST00000146431.3	749	4	-39	-318	14	-5	multi-exon	FALSE	canonical	3	25	junction_1	30.8796948747159	86	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTACTGGGCTTTGGGGCT	8351	False	NA	NA	False	NA	NA	NA	78356536	78362766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78356832_78359450_78359535_78361520_78361678_78362196
71317	chr13	-	597	3	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3	6	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGTGCACAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59059827	59056455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_59056897_59058316_59058376_59059730
71318	chr7	-	3024	1	ISM	ENSMUSG00000025789.10	ENSMUST00000026896.10	5368	6	71290	242	71290	-242	mono-exon	FALSE	NA	NA	NA	NA	NA	5	83	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGATCCATCAACGCCGGGAA	5213	False	NA	NA	False	NA	NA	NA	73592132	73589108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_73589100_73592100
71319	chr17	-	1406	2	Intergenic	novelGene_286	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGCATGTGGCTTTGTGG	NA	False	NA	NA	False	NA	NA	NA	66793992	66791279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66791340_66792646
71320	chr15	-	848	7	FSM	ENSMUSG00000022490.8	ENSMUST00000023133.8	1306	7	60	398	51	17	multi-exon	FALSE	canonical	3	176	junction_5	12.4688500761787	198	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGCCTCAAGGTTTTCCT	2112	False	NA	NA	False	NA	NA	NA	103446370	103439103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103442776_103442838_103446221
71321	SIRV7	-	832	4	NNC	SIRV7A	novel	949	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1308.33286624195	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_56098_70883_71022_114680_114961_147608
71322	chr9	+	739	1	ISM	ENSMUSG00000039585.16	ENSMUST00000136740.8	12252	44	120125	57107	-750	-13605	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCATTCATTTACCCCC	NA	False	NA	NA	False	NA	NA	NA	59778303	59779042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59778300_59779000
71323	chr13	-	1220	3	ISM	ENSMUSG00000034617.8	ENSMUST00000223398.2	3861	15	34	18054	24	55	5prime_fragment	FALSE	canonical	2	3	junction_2	202	196	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGAATTGTCAGTCATTC	NA	False	NA	NA	False	NA	NA	NA	68730189	68727535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_68727816_68728669_68728835_68729414
71325	chr10	-	1122	3	ISM	ENSMUSG00000071324.12	ENSMUST00000160367.8	3546	13	24399	10151	24399	-9395	internal_fragment	FALSE	canonical	1	3	junction_1	0.5	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTTTTGTTTTGATGT	NA	False	NA	NA	False	NA	NA	NA	41827719	41802197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_41803097_41823891_41823992_41827596
71326	chr5	+	493	2	ISM	ENSMUSG00000010825.18	ENSMUST00000120825.2	3865	21	20984	393	15615	-39	3prime_fragment	FALSE	canonical	2	2	junction_1	0	2	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGAATGTCCCACCGGA	6719	False	NA	NA	False	NA	NA	NA	143376830	143377514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_143376961_143377151
71327	chr15	-	1949	1	NIC	ENSMUSG00000022323.12	novel	1004	6	NA	NA	15	-7604	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTCCCAAACTGTATAC	NA	False	NA	NA	False	NA	NA	NA	34495302	34493353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_34493400_34495300
71329	chr13	+	1136	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	-3	-17	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	96.2808392152873	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATTTATGGGAAACATT	NA	False	NA	NA	False	NA	NA	NA	34221618	34258037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_34221862_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
71332	chr7	+	982	10	NIC	ENSMUSG00000063931.15	novel	1881	15	NA	NA	28	-10	combination_of_known_junctions	FALSE	canonical	3	5	junction_9	113.701797547058	46	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTTGTGGCTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	34611831	34680209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34679929
71333	chr5	-	915	1	Intergenic	novelGene_869	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCGCTAACTGGCAAAAGC	NA	False	NA	NA	False	NA	NA	NA	139282417	139281502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_139281500_139282400
71335	chr9	+	1475	1	ISM	ENSMUSG00000001833.18	ENSMUST00000215721.2	1685	4	22691	6	9945	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTTTGATAGTGTGGA	NA	False	NA	NA	False	NA	NA	NA	25186634	25188109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_25186600_25188100
71336	chr4	+	1322	6	NNC	ENSMUSG00000095048.8	novel	1080	5	NA	NA	-15110	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.49666295470958	26	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACAACTCTTTGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	73571480	73590629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_73571608_73587407_73587496_73587962_73588272_73588549_73588628_73589606_73589913_73590215
71337	chr2	+	1632	1	Antisense	novelGene_ENSMUSG00000043102.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGTGAGGTGCCAAGC	6860	False	NA	NA	False	NA	NA	NA	31695402	31697034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_31695400_31697000
71340	chr7	-	612	1	ISM	ENSMUSG00000061374.15	ENSMUST00000167804.9	2637	3	6583	0	5568	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	9840	False	NA	NA	False	NA	NA	NA	5010669	5010057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_5010100_5010700
71341	chr1	-	684	2	Antisense	novelGene_ENSMUSG00000026005.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCTACTGAATAGACAAC	9634	False	NA	NA	False	NA	NA	NA	66755451	66754467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_66754476_66754775
71343	chr1	-	780	3	ISM	ENSMUSG00000007122.12	ENSMUST00000170638.2	990	5	826	6	826	-6	3prime_fragment	FALSE	canonical	3	3	junction_1	0	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAGCAAGTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	172040696	172037467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_172038071_172039514_172039590_172040594
71345	chr7	-	2190	1	Antisense	novelGene_ENSMUSG00000006599.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATGAGATGTGCACCAC	NA	False	NA	NA	False	NA	NA	NA	46457181	46454991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46455000_46457200
71346	chr6	+	2537	3	FSM	ENSMUSG00000000058.7	ENSMUST00000000058.7	2733	3	92	104	-50	-104	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATGATTTCATTGATTC	54	False	NA	NA	False	NA	NA	NA	17281275	17289010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_17281510_17281893_17282082_17286895
71348	chr2	-	1394	1	Antisense	novelGene_ENSMUSG00000058793.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGGTCCAGCCAAACTGC	4456	False	NA	NA	False	NA	NA	NA	132141798	132140404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_132140400_132141800
71349	chr8	+	743	1	Intergenic	novelGene_1602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCCCTTTTCTCGTACTT	NA	False	NA	NA	False	NA	NA	NA	23654703	23655446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_23654700_23655400
71350	chr2	-	848	2	NNC	ENSMUSG00000054181.12	novel	1541	2	NA	NA	-115	-100	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	52	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTTGCTTCCAACTGC	NA	False	NA	NA	False	NA	NA	NA	57128635	57126338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_57126985_57128433
71352	chr8	-	1351	1	Intergenic	novelGene_1620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCTAACATACTTCATAC	NA	False	NA	NA	False	NA	NA	NA	37059485	37058134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_37058100_37059500
71353	chr9	+	2606	1	Intergenic	novelGene_1027	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTAGTAGTAGTAGTCAG	NA	False	NA	NA	False	NA	NA	NA	47411940	47414546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_47411900_47414500
71354	chr2	-	692	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	31	24	31	-18	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	185	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTCAAGTATCTGAGAATA	327	False	NA	NA	False	NA	NA	NA	84501083	84499582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
71355	chr8	+	1350	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110143.8	1312	9	-38	0	-38	0	multi-exon	FALSE	canonical	3	113	junction_6	45.467021015237	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8551	False	NA	NA	False	NA	NA	NA	70605389	70620138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
71356	chr8	+	2149	13	ISM	ENSMUSG00000031841.20	ENSMUST00000117160.2	3785	14	221868	1473	191188	-1473	3prime_fragment	FALSE	canonical	0	0	junction_1	0.276385399196283	4	42	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	119232339	120050187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_119232455_119401756_119401966_119484106_119484224_119578457_119578611_119694787_119694933_119821923_119822103_119925593_119925735_119963522_119963706_119968928_119969183_120015324_120015468_120039240_120039475_120040711_120040934_120050133
71357	chr17	-	451	4	NNC	ENSMUSG00000024067.15	novel	512	4	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1071.99699419147	4	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATAGTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	74623383	74606478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_74606765_74622896_74622945_74623038_74623112_74623339
71359	chr7	-	890	5	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-3901	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	33.9512518178638	129	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	NA	False	NA	NA	NA	30302235	30289105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30302180
71360	chr11	-	679	2	Intergenic	novelGene_2534	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	148	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAGGACCATGAACCAAGA	NA	False	NA	NA	False	NA	NA	NA	117066044	117065269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_117065657_117065752
71361	chr12	-	1942	3	ISM	ENSMUSG00000033854.11	ENSMUST00000110113.3	2629	7	134350	-15	91285	15	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGACATCTTGCGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	98407036	98400073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_98401687_98402450_98402594_98406850
71363	chr11	+	453	3	NNC	ENSMUSG00000017716.16	novel	947	4	NA	NA	-28	-348	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	980.5	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTCCTAGCAGGATCT	NA	False	NA	NA	False	NA	NA	NA	117740116	117746210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117740292_117743488_117743607_117746050
71367	chr5	-	1028	4	NIC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	238.844905511692	877	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	7980	False	NA	NA	False	NA	NA	NA	114266277	114261986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_114262316_114263592_114263792_114265586_114265831_114266021
71368	chr19	-	798	5	FSM	ENSMUSG00000050623.6	ENSMUST00000237380.2	806	5	6	2	-1	-1	multi-exon	FALSE	canonical	3	6	junction_4	16.5529453572468	193	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCAGTGCGTGGCTGCTT	7417	False	NA	NA	False	NA	NA	NA	6902721	6899792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902518_6902659
71370	chr4	+	730	1	ISM	ENSMUSG00000028458.13	ENSMUST00000060864.13	3947	10	5394	2	2383	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGACTGTCATTAGCTC	1316	False	NA	NA	False	NA	NA	NA	43447332	43448062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_43447300_43448100
71371	chrX	+	850	1	ISM	ENSMUSG00000042595.8	ENSMUST00000047852.8	8299	6	31553	507	31553	-507	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAGAGATTATCATTCAC	NA	False	NA	NA	False	NA	NA	NA	135981895	135982745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_135981900_135982700
71372	chr1	+	370	1	Intergenic	novelGene_438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAATGTGAGTTAAATA	NA	False	NA	NA	False	NA	NA	NA	122803317	122803687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_122803300_122803700
71373	chr4	+	711	1	ISM	ENSMUSG00000039953.14	ENSMUST00000105691.8	4459	18	61701	20	21039	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	26	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTGGTTCTAACTCCA	NA	False	NA	139	True	NA	NA	NA	149732625	149733336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_149732600_149733300
71374	chr12	+	1137	4	FSM	ENSMUSG00000020639.15	ENSMUST00000020967.11	1306	4	708	-539	664	-3	multi-exon	FALSE	canonical	1	2	junction_2	0.816496580927726	5	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGCATGTGTGAAGTCT	2336	False	NA	NA	False	NA	NA	NA	4820002	4828805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_4820270_4824391_4824530_4825419_4825526_4828179
71375	chr18	+	745	4	NIC	ENSMUSG00000024646.15	novel	833	5	NA	NA	6	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	472.982029256926	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCATATGTGTCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	84869507	84897988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_84869733_84889629_84889759_84891264_84891295_84897627
71376	chr15	-	1726	11	FSM	ENSMUSG00000038879.9	ENSMUST00000040791.9	4331	11	486	2119	8	588	multi-exon	FALSE	canonical	2	3	junction_3	2.40831891575846	16	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTACAGGGGTGTTC	319	False	NA	NA	False	NA	NA	NA	34678872	34575063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34575718_34577715_34577811_34578853_34578918_34582866_34582956_34584775_34584912_34600160_34600258_34609318_34609441_34625117_34625178_34648811_34648984_34650527_34650597_34678704
71377	chr9	+	629	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-7119	-4	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	3	202	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTTGCAGACTTGACA	NA	False	NA	NA	False	NA	NA	NA	76219739	76228124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_76219851_76226917_76227020_76227708
71378	chr13	+	1120	3	Intergenic	novelGene_1363	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	41	56	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCCCTCAAAATTTCAT	NA	False	NA	NA	False	NA	NA	NA	49121867	49123362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_49122081_49122413_49122767_49122808
71379	chr2	-	777	4	FSM	ENSMUSG00000027317.9	ENSMUST00000076084.6	787	4	-2	12	-2	9	multi-exon	FALSE	canonical	3	35	junction_3	4.96655480858378	422	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACCCAGAATAAGGGAG	NA	False	NA	NA	False	NA	NA	NA	119060389	119048611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022
71380	chr7	+	713	2	Intergenic	novelGene_2972	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTCCGCAGTAATTGGAA	NA	False	NA	NA	False	NA	NA	NA	63804683	63834956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_63805338_63834897
71383	chr9	+	1130	1	FSM	ENSMUSG00000118660.1	ENSMUST00000216462.2	990	1	-274	134	-274	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCAGGTTATTCTACAT	NA	False	NA	NA	False	NA	NA	NA	122737781	122738911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_122737800_122738900
71384	chr6	-	1093	6	FSM	ENSMUSG00000030220.14	ENSMUST00000032344.12	1193	6	50	50	50	-50	multi-exon	FALSE	canonical	3	8	junction_3	3.18747549010185	43	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATTTGCTTTCCTTTGC	5621	False	NA	NA	False	NA	NA	NA	136918704	136900702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918648
71385	chr18	+	1669	1	Antisense	novelGene_ENSMUSG00000025427.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGAAGTGGAGGGAGGA	NA	False	NA	NA	False	NA	NA	NA	77546528	77548197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_77546500_77548200
71386	chr15	+	1459	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	33	1085	33	534	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	1	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTGATCATATATTAAATA	82	False	NA	NA	False	NA	NA	NA	10981874	10995627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
71387	chr15	-	1158	3	Antisense	novelGene_ENSMUSG00000022286.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTGAGACGTCAGGCTGA	6388	False	NA	NA	False	NA	NA	NA	37361932	37347959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_37348098_37358612_37358676_37360975
71388	chr10	+	1092	3	FSM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	-28	-2	-28	2	multi-exon	TRUE	canonical	3	7	junction_2	4.5	45	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGACTCTGTCTTATTT	NA	False	NA	NA	False	NA	NA	NA	21469015	21498277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21469134_21469230_21469472_21497544
71392	chr2	-	685	6	NNC	ENSMUSG00000005510.10	novel	1046	7	NA	NA	-22	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	769.094896615496	27	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTCTCCTTCCTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	90735068	90724983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_90725153_90729045_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
71393	chr9	-	822	4	FSM	ENSMUSG00000079677.3	ENSMUST00000217150.2	951	4	123	6	15	-6	multi-exon	FALSE	canonical	3	216	junction_3	55.4276304943863	41	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACATCTCCGACATGT	NA	False	NA	NA	False	NA	NA	NA	20984787	20978822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559
71394	chr15	-	619	4	Intergenic	novelGene_3356	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	11	junction_1	2.62466929133727	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTCTAGAATTTGTC	1482	False	NA	NA	False	NA	NA	NA	97029731	97026296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97026566_97026963_97027102_97029108_97029265_97029675
71395	chr17	+	1075	4	FSM	ENSMUSG00000062252.10	ENSMUST00000080780.8	1313	4	135	103	28	-103	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	14	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTGGCTACTACACCTA	8699	False	NA	NA	False	NA	NA	NA	28794761	28802464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28795387_28798904_28799142_28801953_28802000_28802297
71396	chr3	-	1314	4	FSM	ENSMUSG00000027828.13	ENSMUST00000119896.2	1469	4	-37	192	33	-192	multi-exon	FALSE	canonical	3	545	junction_3	65.0281990114033	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTTTTCAGTATTGAAG	2749	False	NA	NA	False	NA	NA	NA	65300011	65289642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65290545_65295152_65295252_65298745_65298873_65299825
71398	chr19	-	1687	1	Antisense	novelGene_ENSMUSG00000024800.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCACCCGCGCGCCAGT	NA	False	NA	NA	False	NA	NA	NA	36062812	36061125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_36061100_36062800
71399	chr12	-	850	4	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8460	12	at_least_one_novel_splicesite	TRUE	canonical	3	41	junction_2	1.69967317119759	386	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATTTGATTCTCCTAT	NA	False	NA	NA	False	NA	NA	NA	87271870	87267801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87268219_87269818_87270042_87270931_87271084_87271812
71400	chr11	-	686	4	NIC	ENSMUSG00000025144.18	novel	606	5	NA	NA	0	-2	intron_retention	FALSE	canonical	3	556	junction_3	132.30268326833	2427	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGGCCTGCTTTCTCTTTG	NA	False	NA	NA	False	NA	NA	NA	120604564	120601770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120602305_120602528_120602583_120602669_120602722_120604518
71401	chr4	-	2108	1	Intergenic	novelGene_1816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTATAATTATTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	33172566	33170458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_33170500_33172600
71402	chr10	-	2613	13	FSM	ENSMUSG00000040249.16	ENSMUST00000121829.8	2887	13	263	11	215	-11	multi-exon	TRUE	canonical	1	1	junction_8	2.95334085777823	2	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCTACCATCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	127456576	127425035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127425647_127426425_127426607_127427770_127428008_127429221_127429366_127429648_127429839_127430817_127431041_127431153_127431317_127441277_127441542_127441654_127441784_127443814_127443935_127446211_127446350_127448525_127448649_127456486
71404	chr2	+	1550	1	FSM	ENSMUSG00000086358.3	ENSMUST00000193685.2	2782	1	1206	26	1206	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCTATAAATAAAATTGTCA	6014	False	NA	NA	False	NA	NA	NA	13277618	13279168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_13277600_13279200
71405	chr5	+	641	5	NNC	ENSMUSG00000029199.12	novel	447	6	NA	NA	-3	-162	intron_retention	FALSE	canonical	1	1	junction_4	168.931014026436	42	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATTCTCAGCTGGGTAG	6950	False	NA	NA	False	NA	NA	NA	65548903	65553364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65553181
71406	chr3	-	454	1	Antisense	novelGene_ENSMUSG00000038374.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTTACATAGTACCCAAG	NA	False	NA	NA	False	NA	NA	NA	96540223	96539769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_96539800_96540200
71407	chr19	-	1631	1	Genic_Genomic	ENSMUSG00000097785.3	novel	NA	NA	NA	NA	-43	-35803	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATAAAAACGGGACTGGA	9225	False	NA	NA	False	NA	NA	NA	57349250	57347619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_57347600_57349200
71408	chr9	+	802	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	1638	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGGGCTCTTTCTTTGA	NA	False	NA	NA	False	NA	NA	NA	54672031	54680394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
71409	chr10	+	3162	1	Intergenic	novelGene_3503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	85	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCATAGTGGGCATGGAT	511	False	NA	NA	False	NA	NA	NA	87915811	87918973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_87915800_87919000
71410	chr11	+	980	1	NIC	ENSMUSG00000052915.15	novel	4593	9	NA	NA	-98	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATAAGGACTATCTTG	361	False	NA	NA	False	NA	NA	NA	98690892	98691872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_98690900_98691900
71411	chr4	-	759	2	Intergenic	novelGene_1850	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	24	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAAGTATTCCTCAGGCC	NA	False	NA	NA	False	NA	NA	NA	53327498	53318652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_53319316_53327402
71412	chr6	+	3156	10	ISM	ENSMUSG00000062980.16	ENSMUST00000115383.9	5690	22	152742	5	3112	-5	3prime_fragment	FALSE	canonical	0	0	junction_1	0.314269680527354	2	86	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAATCATTTGTGCTCAGA	NA	False	NA	NA	False	NA	NA	NA	22138656	22256398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_22138710_22143942_22144130_22145517_22145687_22215510_22215629_22222402_22222540_22233443_22233665_22233906_22234009_22234629_22234718_22237594_22237742_22254464
71413	chr14	-	1596	6	ISM	ENSMUSG00000037833.15	ENSMUST00000096000.4	1597	8	297	23747	297	20768	5prime_fragment	FALSE	canonical	3	18	junction_1	5.05964425626941	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACCTCTGTTCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	40614926	40561571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_40562307_40564330_40564548_40582548_40582697_40594486_40594635_40596036_40596197_40614738
71414	chr16	-	1221	9	Antisense	novelGene_ENSMUSG00000055447.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCAGGAGCGGCCGCC	NA	False	NA	NA	False	NA	NA	NA	49731448	49676049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_49676195_49688126_49688474_49704525_49704618_49714539_49714646_49715729_49715822_49716715_49716810_49718400_49718494_49727140_49727175_49731230
71416	chr1	-	1679	2	ISM	ENSMUSG00000002881.15	ENSMUST00000167732.2	514	4	4916	-1559	4916	-388	3prime_fragment	FALSE	canonical	3	32	junction_1	0	8	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGCACACACACACACACA	2999	False	NA	NA	False	NA	NA	NA	52501300	52496840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_52498466_52501246
71418	chr5	-	1067	3	NNC	ENSMUSG00000029603.16	novel	540	2	NA	NA	-1045	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.5	2	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGGTCTTTCTCCTTGTC	NA	False	NA	NA	False	NA	NA	NA	120834513	120818284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_120819108_120832994_120833178_120834452
71419	chr7	+	1494	1	Intergenic	novelGene_3055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCCATACATCTGGCCT	7084	False	NA	NA	False	NA	NA	NA	141156048	141157542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_141156000_141157500
71421	chr10	+	846	2	ISM	ENSMUSG00000056821.14	ENSMUST00000178540.8	1056	3	6930	-49	6930	49	3prime_fragment	FALSE	canonical	2	7	junction_1	0	22	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTTTTGGTGATAGTT	NA	False	NA	NA	False	NA	NA	NA	82654886	82660125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_82654958_82659350
71422	chrX	-	1959	10	FSM	ENSMUSG00000032750.14	ENSMUST00000037374.11	2153	10	78	116	-70	67	multi-exon	FALSE	canonical	1	1	junction_2	1.5475986974649	6	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTAAAAGGTTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	74128433	74032242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_74032443_74033659_74033777_74043570_74043707_74045416_74045499_74047929_74048138_74048921_74048978_74068383_74068863_74069594_74069812_74076776_74077081_74128273
71423	chr3	+	1669	1	Intergenic	novelGene_3101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAGGCCCAAACAAAACAAA	8263	False	NA	NA	False	NA	NA	NA	37722971	37724640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_37723000_37724600
71426	chr4	-	1287	9	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-2	-87	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	264.878952306521	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAAACCTCATCTTGCTC	NA	False	NA	NA	False	NA	NA	NA	155845546	155835081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840194_155840517_155840620_155841548_155841626_155845258
71428	chr3	-	316	4	NNC	ENSMUSG00000090733.7	novel	458	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6932.13060080858	23	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	NA	False	NA	NA	NA	90120955	90119973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90120061_90120240_90120345_90120522_90120609_90120916
71429	chr5	+	577	1	Intergenic	novelGene_858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTTCCAAACCCTCTT	NA	False	NA	NA	False	NA	NA	NA	129145331	129145908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_129145300_129145900
71430	chr13	+	1890	1	Intergenic	novelGene_1312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAGTATCACTGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	8917871	8919761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_8917900_8919800
71431	chr16	-	495	1	Antisense	novelGene_ENSMUSG00000022797.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTCTAGAAATAGAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	32439680	32439185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32439200_32439700
71433	chr7	+	833	5	FSM	ENSMUSG00000063903.6	ENSMUST00000075162.5	954	5	118	3	35	-3	multi-exon	FALSE	canonical	3	34	junction_1	17.0934929139717	399	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAAGTTCTGACATT	NA	False	NA	NA	False	NA	NA	NA	43874901	43879039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_43874949_43876944_43877105_43877951_43878239_43878334_43878472_43878837
71434	chr12	+	1640	2	ISM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	77688	-53	-1920	-5	3prime_fragment	FALSE	canonical	3	329	junction_1	0	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTAAAACCTTGCACTG	NA	False	NA	NA	False	NA	NA	NA	111619172	111622647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_111619869_111621703
71435	chr12	-	1287	2	Intergenic	novelGene_4424	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	9	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATGGATTCAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	82212524	82208185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_82209374_82212425
71436	chr3	-	481	1	FSM	ENSMUSG00000094392.2	ENSMUST00000119949.3	136	1	-70	-275	-70	275	mono-exon	FALSE	NA	NA	NA	NA	NA	5	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	86579545	86579064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86579100_86579500
71438	chr5	-	973	1	ISM	ENSMUSG00000029705.18	ENSMUST00000004097.16	12862	24	300055	3	35131	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACAAGCGCGTGTGGGC	6282	False	NA	NA	False	NA	NA	NA	136296244	136295271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_136295300_136296200
71439	chr16	-	1014	3	Intergenic	novelGene_3577	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	6	41	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTGGGGAGGTTTCG	NA	False	NA	NA	False	NA	NA	NA	7769527	7765482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_7766403_7768342_7768423_7769513
71441	chr4	-	681	5	NNC	ENSMUSG00000036078.17	novel	553	4	NA	NA	1	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	247.674559654398	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGGATGGTGGAGTACG	NA	False	NA	NA	False	NA	NA	NA	41755398	41739525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41739581_41740549_41740643_41740775_41740977_41748281_41748384_41755168
71443	chr13	+	1410	4	NNC	ENSMUSG00000054021.7	novel	435	4	NA	NA	19	-3747	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	91.46705539276	17	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATCTTCTTTATGTGTA	NA	False	NA	NA	False	NA	NA	NA	43519180	43526461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_43519217_43521870_43521941_43524194_43524345_43525307
71445	chr10	-	1005	1	Intergenic	novelGene_3541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTAAGTTCCCAATCCTA	NA	False	NA	NA	False	NA	NA	NA	120203834	120202829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_120202800_120203800
71446	chr15	+	962	3	NIC	ENSMUSG00000023047.12	novel	1938	11	NA	NA	121	1	intron_retention	FALSE	canonical	3	133	junction_1	11	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATCAATGTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	102360878	102363069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102360995_102361179_102361604_102362647
71447	chr7	+	1599	10	FSM	ENSMUSG00000030782.18	ENSMUST00000070656.12	3026	10	1321	106	16	-101	multi-exon	FALSE	canonical	0	0	junction_4	1.03040205505508	11	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGTCTGACCAAGTAG	5409	False	NA	NA	False	NA	NA	NA	127847363	127852778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127847465_127847591_127847645_127847749_127847893_127848058_127848147_127848261_127848368_127848471_127848667_127851248_127851423_127851649_127851732_127851955_127852105_127852270
71448	chr18	-	1126	2	ISM	ENSMUSG00000024619.9	ENSMUST00000025521.9	1750	3	15760	20	15760	-20	3prime_fragment	FALSE	canonical	3	995	junction_1	0	73	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTTTTTAAAAAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	61153511	61151953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_61153014_61153445
71449	chr14	-	928	8	ISM	ENSMUSG00000047911.7	ENSMUST00000062629.5	997	9	390	4	390	-4	3prime_fragment	FALSE	canonical	1	3	junction_7	2.66496544373966	34	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAACCTCCCTCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	70890134	70884745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70884990_70885076_70885111_70885484_70885526_70885699_70885852_70886910_70887005_70889562_70889677_70889768_70889855_70889971
71451	chr8	+	842	3	FSM	ENSMUSG00000095026.3	ENSMUST00000213065.2	842	3	-2	2	-2	0	multi-exon	FALSE	canonical	3	28	junction_1	4.5	125	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTAAAGTCTCACGATT	NA	False	NA	NA	False	NA	NA	NA	71171189	71175281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71171282_71174425_71174587_71174692
71452	chr4	+	1371	8	ISM	ENSMUSG00000028463.15	ENSMUST00000030183.10	2023	11	1923	25	-48	-25	3prime_fragment	TRUE	canonical	0	0	junction_1	0.989743318610787	2	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATATAAATCTTCCTAG	14	True	NA	NA	False	NA	NA	NA	43508888	43513704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_43509036_43509117_43509211_43510196_43510264_43511826_43511985_43512141_43512278_43512411_43512439_43512851_43512934_43513043
71453	chr19	-	463	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	87	0	14	0	multi-exon	FALSE	canonical	3	12296	junction_1	0	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCATGTCCTTCTGCAC	7453	False	NA	NA	False	NA	NA	NA	7194894	7192517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7192850_7194763
71454	chr4	+	1253	8	FSM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	58	4	58	4	multi-exon	FALSE	canonical	3	21	junction_4	2.37332110369088	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTCTTGGGTGCACTCTGC	NA	False	NA	NA	False	NA	NA	NA	156046832	156051082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_156047195_156048999_156049117_156049224_156049346_156049436_156049589_156050050_156050160_156050322_156050414_156050538_156050618_156050860
71457	chr16	+	626	5	NNC	ENSMUSG00000022849.6	novel	1703	8	NA	NA	25	-96	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	306.969461021777	9	13	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATACGTGTATATTTGCT	5461	False	NA	NA	False	NA	NA	NA	35590801	35645822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_35590910_35607559_35607746_35621906_35622080_35634287_35634337_35645712
71458	chr4	+	662	1	ISM	ENSMUSG00000039953.14	ENSMUST00000105691.8	4459	18	61770	0	21108	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTGGGGTCCATTCT	NA	False	NA	NA	False	NA	NA	NA	149732694	149733356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_149732700_149733400
71459	chr7	-	650	4	FSM	ENSMUSG00000036835.8	ENSMUST00000043898.8	708	4	61	-3	-56	1	multi-exon	FALSE	canonical	3	560	junction_3	125.517595048131	3243	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTCTTGGGATCTTTCG	1351	False	NA	NA	False	NA	NA	NA	30262605	30261286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262476
71460	chr9	-	601	1	FSM	ENSMUSG00000051074.5	ENSMUST00000058992.3	652	1	23	28	4	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTTGAATTTCAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	98445641	98445040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_98445000_98445600
71464	chr2	+	951	2	Intergenic	novelGene_2794	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	107	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTAAATGTCCCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	168798135	168800160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168798567_168799640
71466	chr11	-	1212	1	ISM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	28328	8	10367	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	80	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACATCTGGTATGTGA	NA	False	NA	NA	False	NA	NA	NA	97607202	97605990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97606000_97607200
71468	chr2	+	1436	1	Intergenic	novelGene_2806	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTAAGTTCTCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	168870802	168872238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168870800_168872200
71469	chr16	-	430	4	NNC	ENSMUSG00000022890.14	novel	809	5	NA	NA	-25	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2793.55512245995	274	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTTATCAAATGTCCTT	NA	False	NA	NA	False	NA	NA	NA	84631745	84624766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_84624884_84625312_84625398_84628216_84628396_84631696
71470	chrX	-	735	3	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	4159	2	4159	-2	3prime_fragment	FALSE	canonical	3	117	junction_2	2	23	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGTGAATTCTCGACAT	NA	False	NA	NA	False	NA	NA	NA	36481752	36477458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_36477701_36479202_36479249_36481305
71471	chr5	-	911	1	Antisense	novelGene_ENSMUSG00000054099.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTCTATTAACATAGCCC	NA	False	NA	NA	False	NA	NA	NA	8478609	8477698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_8477700_8478600
71473	chr12	+	967	2	FSM	ENSMUSG00000046675.8	ENSMUST00000057416.8	3367	2	245	2155	245	-2155	multi-exon	FALSE	canonical	3	165	junction_1	0	118	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCTTGCTTTAAAAATT	NA	False	NA	NA	False	NA	NA	NA	102710265	102711665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_102710426_102710858
71474	chr11	-	1198	6	NIC	ENSMUSG00000042988.11	novel	2212	11	NA	NA	100	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_4	40.844093820282	37	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGCTCACCCTGAAC	2450	False	NA	NA	False	NA	NA	NA	120548770	120544613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120545353_120545589_120545638_120546589_120546738_120547157_120547259_120548318_120548422_120548711
71476	chr15	-	753	4	ISM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	572	1	514	-1	3prime_fragment	FALSE	canonical	3	637	junction_3	34.4512538072113	283	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGACGTTGTATTTTTCAC	NA	False	NA	NA	False	NA	NA	NA	98625507	98622251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091
71477	chr17	-	435	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	-1	0	-1	0	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	405	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6006	False	NA	NA	False	NA	NA	NA	35171448	35169216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
71478	chr15	+	1583	1	ISM	ENSMUSG00000047888.11	ENSMUST00000067689.9	17332	25	220594	7596	8843	3457	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAAAGTGAATGGGTGGG	NA	False	NA	NA	False	NA	NA	NA	80816107	80817690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_80816100_80817700
71479	chr17	-	390	4	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4596.41606761906	49	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45884195	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878794_45882493_45882546_45882690_45882838_45884092
71482	chr1	-	873	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12890	-2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	8.65383665716478	92	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAACTGGATGTCAGCTC	9665	False	NA	NA	False	NA	NA	NA	65149383	65144445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65144910_65148620_65148736_65148992_65149124_65149220
71483	chr16	-	716	4	FSM	ENSMUSG00000022671.14	ENSMUST00000117136.2	758	4	49	-7	-10	0	multi-exon	FALSE	canonical	3	85	junction_3	237.265439727089	2984	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	15681184	15666306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15666594_15680261_15680408_15680611_15680797_15681086
71484	chr13	-	809	2	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-909	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCCTCCTCCATCTTTGA	NA	False	NA	NA	False	NA	NA	NA	98853927	98849584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98849717_98853250
71486	chr3	-	1162	10	NNC	ENSMUSG00000039735.17	novel	5198	14	NA	NA	36	-1148	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	27.491412800687	1	41	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTACAGCAGCGCATTG	NA	False	NA	NA	False	NA	NA	NA	122413328	122342864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_122342915_122351551_122351756_122352668_122352816_122354481_122354611_122357483_122357589_122362401_122362465_122363243_122363392_122364539_122364594_122383776_122383893_122413182
71488	chr11	-	663	1	FSM	ENSMUSG00000094483.3	ENSMUST00000179343.3	8319	1	1828	5828	1828	-5828	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAAGGATCGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	6424089	6423426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6423400_6424100
71489	chr19	+	543	5	NNC	ENSMUSG00000024829.13	novel	802	7	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	805.901164845913	13	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGCCTGTGACTTGCTGT	7372	False	NA	NA	False	NA	NA	NA	3333060	3341197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3333172_3334759_3334818_3335309_3335353_3338977_3339088_3340976
71490	chr18	+	842	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	-12	1	-12	-1	multi-exon	FALSE	canonical	3	759	junction_1	90	2772	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTGACTTACTCCAGG	NA	False	NA	NA	False	NA	NA	NA	36481737	36536032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36481870_36499567_36499795_36535549
71494	chr19	-	754	6	NIC	ENSMUSG00000034108.7	novel	1067	8	NA	NA	4942	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_5	234.824700574705	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	4884305	4875393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884200
71495	chr9	-	1851	17	Intergenic	novelGene_1007	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	33	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAGGGAGACAGAGCAT	NA	False	NA	NA	False	NA	NA	NA	32159846	32021129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_32021232_32040863_32040974_32063216_32063310_32064335_32064419_32081383_32081471_32093135_32093274_32097622_32097722_32098931_32099051_32101277_32101356_32119477_32119560_32150555_32150706_32156445_32156550_32157212_32157357_32157740_32157820_32158406_32158507_32158779_32158887_32159670
71496	chr1	+	1823	1	Intergenic	novelGene_368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACTGACTCCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	54318973	54320796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_54319000_54320800
71497	chr14	+	892	1	Intergenic	novelGene_584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGTAGTGATTCGAACAAA	3880	False	NA	NA	False	NA	NA	NA	60489079	60489971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_60489100_60490000
71498	chr9	-	1944	1	FSM	ENSMUSG00000111679.2	ENSMUST00000213340.2	349	1	-247	-1348	-247	1348	mono-exon	FALSE	NA	NA	NA	NA	NA	5	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCCTAAACAAGACGAAACA	NA	False	NA	NA	False	NA	NA	NA	120535550	120533606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_120533600_120535600
71499	chr7	+	1717	2	Antisense	novelGene_ENSMUSG00000030417.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCACGTCGCGCAGGCGC	9646	False	NA	NA	False	NA	NA	NA	35343964	35346805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_35345606_35346729
71500	chr19	-	870	1	Intergenic	novelGene_1283	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTTTTTTTAATTTTT	NA	False	NA	NA	False	NA	NA	NA	45063327	45062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_45062500_45063300
71501	chr11	+	970	5	FSM	ENSMUSG00000040963.16	ENSMUST00000179757.2	672	5	26	-324	26	-7	multi-exon	FALSE	canonical	3	41	junction_2	4.49305018890286	48	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAACTCGTGTAGCCTG	7016	False	NA	NA	False	NA	NA	NA	69988543	69997006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
71503	chr5	-	772	3	NNC	ENSMUSG00000029410.12	novel	732	3	NA	NA	43	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	10	50	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAATTACCT	NA	False	NA	NA	False	NA	NA	NA	92376837	92374548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92375087_92376505_92376594_92376691
71504	chr9	-	822	2	Intergenic	novelGene_1129	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACAAGCGCGCGCCA	NA	False	NA	NA	False	NA	NA	NA	94421687	94420764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_94421315_94421415
71505	chr6	-	813	7	NIC	ENSMUSG00000029759.10	novel	1837	9	NA	NA	-3	-662	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	15.5715195861619	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAAGGGGAACTGTAATT	67	False	NA	NA	False	NA	NA	NA	5256217	5221513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5246277_5246334_5254515_5254587_5256152
71506	chr12	+	2057	3	NNC	ENSMUSG00000021070.7	novel	3792	3	NA	NA	21967	-2041	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	7	2	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCAAGAGGAAAGAACTGCA	NA	False	NA	NA	False	NA	NA	NA	105551451	105559455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105551781_105554455_105554560_105557831
71508	chr7	+	953	6	NIC	ENSMUSG00000038695.14	novel	922	6	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	25.8580741742304	137	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTATTTGTGCCTGGGCT	4774	False	NA	NA	False	NA	NA	NA	44117435	44121070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44117615_44117783_44117842_44118230_44118394_44119835_44119962_44120536_44120732_44120838
71509	chr17	+	973	3	FSM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	10	-7	10	4	multi-exon	FALSE	canonical	0	0	junction_1	121.5	870	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAATGGTACCATGTTTC	NA	False	NA	NA	False	NA	NA	NA	37269493	37276521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_37269595_37275248_37275325_37275725
71510	chrX	-	1684	1	FSM	ENSMUSG00000046269.18	ENSMUST00000115744.2	3240	1	1536	20	1532	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	10	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTTGTTGGCTCTGAA	NA	False	NA	NA	False	NA	NA	NA	7240533	7238849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7238800_7240500
71512	chr10	-	533	2	FSM	ENSMUSG00000097327.8	ENSMUST00000181677.2	617	2	-223	307	-10	-307	multi-exon	FALSE	canonical	3	6	junction_1	0	41	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTGTCTTGGTCTCA	NA	False	NA	NA	False	NA	NA	NA	22024732	21993567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_21993756_22024387
71513	chr8	+	983	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	-2	59	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	1607	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAAATTTCAAGATATAT	NA	False	NA	NA	False	NA	NA	NA	80438477	80502030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
71515	chr11	+	948	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4280	0	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_1	147.648983139818	173	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	NA	False	NA	NA	NA	117898888	117914837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117898955_117905399_117905549_117910432_117910559_117914230
71516	chr17	-	706	2	Intergenic	novelGene_102	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACTTGACTCAGAGC	1038	False	NA	NA	False	NA	NA	NA	24250351	24249599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_24249824_24249869
71518	chr8	+	644	6	ISM	ENSMUSG00000039478.16	ENSMUST00000136835.2	2488	8	21237	1662	18418	-16	3prime_fragment	FALSE	canonical	1	2	junction_2	2.0976176963403	1	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCAGGCAAGGAGCAAGAT	5535	False	NA	NA	False	NA	NA	NA	40828580	40837687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_40828679_40829136_40829309_40831872_40831982_40833712_40833871_40835149_40835219_40837649
71519	chr9	-	1738	7	NIC	ENSMUSG00000060594.7	novel	1786	8	NA	NA	-9	-11	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	1.24721912892465	12	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAATGTTAGTCAGTCTG	NA	False	NA	NA	False	NA	NA	NA	50988381	50968090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_50968957_50970756_50970857_50973482_50973567_50974536_50974573_50979338_50979497_50985147_50985446_50988185
71520	chr8	-	799	4	NNC	ENSMUSG00000005150.17	novel	2707	5	NA	NA	-1010	-1145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2394	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGAAAGTAGGAAGTCTA	NA	False	NA	NA	False	NA	NA	NA	85808945	85807468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85807691_85807799_85807902_85808399_85808504_85808574
71521	chr17	-	820	4	FSM	ENSMUSG00000036185.10	ENSMUST00000040151.9	935	4	124	-9	22	9	multi-exon	FALSE	canonical	3	19	junction_3	16.4181471413663	181	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAAGCCTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	35246868	35244943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35245434_35245669_35245763_35246419_35246561_35246772
71522	chr15	-	965	1	NIC	ENSMUSG00000033055.13	novel	1904	8	NA	NA	1257	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	28	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAAAGAAATCTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	78938287	78937322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_78937300_78938300
71523	chr2	-	997	1	FSM	ENSMUSG00000077714.3	ENSMUST00000104526.3	238	1	-403	-356	-403	356	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTGACTTATGAGGTGTC	NA	False	NA	NA	False	NA	NA	NA	144108539	144107542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_144107500_144108500
71524	chr14	-	1285	5	ISM	ENSMUSG00000021799.10	ENSMUST00000168444.9	2075	10	4074	-1	-4045	1	3prime_fragment	FALSE	canonical	0	0	junction_3	0.866025403784439	12	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTCTCTAGTGATAAGC	NA	False	NA	NA	False	NA	NA	NA	34317841	34312573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_34313288_34314909_34315027_34315786_34315968_34316723_34316832_34317676
71528	chr11	+	1645	1	Intergenic	novelGene_2463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCATTTGGCGGAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	95892569	95894214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_95892600_95894200
71529	chr9	-	2197	5	ISM	ENSMUSG00000035200.8	ENSMUST00000034854.8	3723	6	4865	1179	4865	-1179	3prime_fragment	FALSE	canonical	0	0	junction_4	1.08972473588517	7	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCCTGCTCTCCTTCAA	NA	False	NA	NA	False	NA	NA	NA	54951198	54936616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_54937530_54941925_54942917_54943675_54943786_54943870_54943916_54951060
71530	chr9	-	3038	1	Antisense	novelGene_ENSMUSG00000032458.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGGGCTGCCATAGCAT	NA	False	NA	NA	False	NA	NA	NA	98449428	98446390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_98446400_98449400
71531	chr15	+	1479	2	FSM	ENSMUSG00000022484.8	ENSMUST00000001699.8	1909	2	422	8	422	-8	multi-exon	FALSE	canonical	2	2	junction_1	0	29	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAATCCTCAAATGGATGG	NA	False	NA	NA	False	NA	NA	NA	102875652	102880320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102876044_102879232
71532	chr13	+	1369	3	ISM	ENSMUSG00000054021.7	ENSMUST00000220458.2	435	4	44	3751	8	-3751	5prime_fragment	FALSE	canonical	3	180	junction_1	9	20	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTGATCTTCTTTATG	NA	False	NA	NA	False	NA	NA	NA	43519147	43526457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_43519217_43524194_43524345_43525307
71533	chr17	+	790	6	NNC	ENSMUSG00000045257.11	novel	656	5	NA	NA	22	655	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	27.9098548903429	395	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAGGAAATGACTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	80597662	80605560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682_80604875_80605364
71534	chr4	-	1636	2	Antisense	novelGene_ENSMUSG00000012123.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTCCCATGGGCTTCAGC	NA	False	NA	NA	False	NA	NA	NA	133801325	133795797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_133795846_133799737
71538	chr17	-	556	5	NIC	ENSMUSG00000024194.17	novel	719	6	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	388.018685117096	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAATCCTCTCCTGCTCC	9450	False	NA	NA	False	NA	NA	NA	27158345	27156968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_27157151_27157391_27157442_27157700_27157761_27157857_27158067_27158290
71539	chr13	+	1384	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	34	-25	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	10	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAACCACTGAACACT	9671	False	NA	NA	False	NA	NA	NA	112937359	113004403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
71540	chr10	+	1364	5	ISM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-45	24013	-20	-1796	5prime_fragment	FALSE	canonical	3	31	junction_1	35.7596140918774	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGTCACATTTAGTATCA	NA	False	NA	NA	False	NA	NA	NA	103203623	103231223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850
71542	chr16	+	1321	1	Intergenic	novelGene_3675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGCTAGAAAAAAAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	57168708	57170029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57168700_57170000
71544	chr19	+	1487	1	Intergenic	novelGene_1288	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAATAGAGCCTCACTGTC	3013	False	NA	NA	False	NA	NA	NA	53041858	53043345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_53041900_53043300
71545	chr6	+	720	3	NNC	ENSMUSG00000042505.7	novel	4323	2	NA	NA	-17	-3567	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGGAAGATGTAGAATTC	NA	False	NA	NA	False	NA	NA	NA	6955986	7039412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_6956082_6956134_6956201_7038853
71546	chr2	-	665	5	ISM	ENSMUSG00000027344.15	ENSMUST00000028820.7	1025	6	22	3667	22	-3667	5prime_fragment	FALSE	canonical	3	7	junction_1	1.08972473588517	34	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTGACTTCAGAATCT	NA	False	NA	NA	False	NA	NA	NA	118087415	118078811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_118078873_118080286_118080442_118082119_118082301_118083766_118083900_118087280
71547	chr7	+	771	4	NIC	ENSMUSG00000025481.13	novel	719	4	NA	NA	-125	-1	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	111.547697819762	904	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAATCTGAACCTATCAT	NA	False	NA	NA	False	NA	NA	NA	140415059	140417878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140415172_140415524_140415665_140416659_140416796_140417495
71548	chr15	+	1849	10	NNC	ENSMUSG00000023033.15	novel	840	4	NA	NA	182	125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.2731157639939	6	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTCCAGATTCCTCCAA	NA	False	NA	NA	False	NA	NA	NA	100866658	100909070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100866677_100866901_100867124_100868084_100868149_100869400_100869543_100870634_100870842_100872303_100872598_100881569_100881927_100899914_100900048_100905933_100906173_100908897
71549	chr9	-	596	2	FSM	ENSMUSG00000032436.18	ENSMUST00000216760.2	665	2	57	12	47	-12	multi-exon	FALSE	canonical	3	16	junction_1	0	45	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATGAGCT	NA	False	NA	NA	False	NA	NA	NA	114610853	114599800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114600279_114610735
71550	chr17	-	342	2	Genic_Genomic	ENSMUSG00000058542.4	novel	552	1	NA	NA	-28	173	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	6182708	6181955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_6182153_6182563
71552	chr19	-	717	2	Antisense	novelGene_ENSMUSG00000024897.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	14	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAGAAATGGCTCAAGAT	NA	False	NA	NA	False	NA	NA	NA	23934122	23920288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_23920926_23934042
71554	chr3	+	1525	10	Antisense	novelGene_ENSMUSG00000028063.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAAGGGTCTTGCGGGCA	NA	False	NA	NA	False	NA	NA	NA	88390519	88410130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_88390723_88391134_88391254_88391353_88391459_88391915_88392144_88392232_88392455_88393510_88393634_88393763_88393940_88394117_88394241_88395581_88395735_88410057
71556	chr11	+	1748	11	Antisense	novelGene_ENSMUSG00000020457.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCTGCGCCGACGGCGG	587	False	NA	NA	False	NA	NA	NA	3106259	3143427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_3106865_3107868_3107935_3109986_3110147_3114556_3114711_3115569_3115679_3120586_3120705_3129396_3129506_3136061_3136132_3137236_3137409_3138938_3139060_3143363
71557	chr15	+	825	8	NNC	ENSMUSG00000033065.15	novel	2816	23	NA	NA	12574	3980	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	27.6287339336335	14	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATTATTGCCTGCAGCGA	NA	False	NA	NA	False	NA	NA	NA	98018920	98023066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98018951_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906
71558	chr6	-	492	3	Intergenic	novelGene_4254	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGCAAATGACAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	125435802	125409714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_125409772_125409996_125410199_125435569
71559	chr5	-	402	1	Intergenic	novelGene_821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGATGTGTTCTGACCG	NA	False	NA	-106	True	NA	NA	NA	113734253	113733851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_113733900_113734300
71562	chr11	+	598	8	NNC	ENSMUSG00000025142.19	novel	1820	16	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	330.52975413319	2	17	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	3203	False	NA	NA	False	NA	NA	NA	120580110	120600273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599540_120600193
71563	chr19	-	746	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	55	597	33	386	multi-exon	FALSE	canonical	3	460	junction_1	27.5	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATGAAAGAGTCTGGAGG	NA	False	NA	NA	False	NA	NA	NA	44994826	44993864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44994380_44994501_44994609_44994702
71564	chr17	-	600	1	Antisense	novelGene_ENSMUSG00000048731.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTGTGGGCGGAGCCAG	7503	False	NA	NA	False	NA	NA	NA	27237568	27236968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_27237000_27237600
71565	chr7	+	602	5	NNC	ENSMUSG00000030842.13	novel	1119	5	NA	NA	27	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	379.820023168869	360	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTGCTGGTTCAACC	7054	False	NA	NA	False	NA	NA	NA	101555137	101561092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559731_101560928
71568	chr1	-	981	2	FSM	ENSMUSG00000016481.16	ENSMUST00000192405.2	532	2	8	-457	-3	5	multi-exon	FALSE	canonical	3	104	junction_1	0	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCAGTTTGGATCCCGTA	NA	False	NA	NA	False	NA	NA	NA	194813655	194811496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_194812318_194813495
71570	chr11	-	859	4	ISM	ENSMUSG00000020912.5	ENSMUST00000017741.4	1852	8	3854	8	3854	-8	3prime_fragment	FALSE	canonical	1	1	junction_3	2.62466929133727	19	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAGTGAAGTGTGTGCCT	9366	False	NA	NA	False	NA	NA	NA	99309231	99306499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_99306935_99307720_99307792_99308740_99308962_99309099
71571	chr7	-	717	6	NIC	ENSMUSG00000033916.6	novel	930	6	NA	NA	49	2	combination_of_known_junctions	FALSE	canonical	3	151	junction_3	1373.87734532599	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTACCAAGGCTGTGAG	7147	False	NA	NA	False	NA	NA	NA	12768522	12765943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_12766130_12766215_12766278_12766361_12766493_12766718_12766749_12767755_12767970_12768428
71572	chr17	+	425	3	NNC	ENSMUSG00000023939.8	novel	645	3	NA	NA	27	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	407	7	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTTCCTATACTGTC	NA	False	NA	NA	False	NA	NA	NA	45997309	46009408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45997354_46006407_46006499_46009118
71573	chr19	+	1390	8	ISM	ENSMUSG00000024778.14	ENSMUST00000025691.13	1481	9	16465	6	7056	0	3prime_fragment	FALSE	canonical	1	1	junction_7	3.77964473009227	23	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTATTGCTCTGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	34284530	34305166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_34284679_34292578_34292717_34293968_34294078_34295989_34296052_34296182_34296237_34296709_34296790_34297960_34297986_34304392
71575	chr12	+	359	4	FSM	ENSMUSG00000056899.11	ENSMUST00000140790.2	347	4	-24	12	13	2	multi-exon	FALSE	canonical	3	185	junction_1	32.8667342798493	635	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAACTCAGTAACTTACT	NA	False	NA	NA	False	NA	NA	NA	41074101	41160944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838
71576	chr8	+	2296	2	Antisense	novelGene_ENSMUSG00000031609.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTGCCGAGAGGGCTG	NA	False	NA	NA	False	NA	NA	NA	57936974	57939639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_57938173_57938541
71578	chr18	+	793	4	NNC	ENSMUSG00000098098.8	novel	588	3	NA	NA	-64	-26	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	31.6262900483478	415	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAATAAACTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	61772548	61780517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61772840_61777285_61777342_61778233_61778437_61780274
71579	chr11	+	1375	11	FSM	ENSMUSG00000002059.19	ENSMUST00000002128.14	1368	11	-2	-5	-2	0	multi-exon	FALSE	canonical	3	60	junction_1	27.8790243731735	366	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTCTTTAAAGATTTA	6023	False	NA	NA	False	NA	NA	NA	78079253	78083019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78079338_78080003_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
71580	chr5	+	1545	9	FSM	ENSMUSG00000062077.15	ENSMUST00000013771.15	1434	9	-113	2	-113	-2	multi-exon	TRUE	canonical	2	14	junction_1	4.29389100932942	44	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCCTCGGCTCCTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	31273942	31294970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294820
71581	chr10	+	577	6	NNC	ENSMUSG00000020153.15	novel	758	8	NA	NA	-229	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	891.661460420938	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGTGTGTTCTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	80088919	80092625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80088992_80089493_80089558_80090704_80090854_80090923_80090971_80091757_80091847_80092469
71582	chr6	-	1231	1	FSM	ENSMUSG00000106990.2	ENSMUST00000201159.2	3798	1	2569	-2	2569	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGATTGTAGTGTTTT	1593	False	NA	NA	False	NA	NA	NA	28212235	28211004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_28211000_28212200
71583	chr10	-	1805	1	Antisense	novelGene_ENSMUSG00000020225.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGAGCGGGGATAGCCCGG	NA	False	NA	NA	False	NA	NA	NA	120046590	120044785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_120044800_120046600
71584	chr17	-	791	5	NIC	ENSMUSG00000024145.7	novel	988	6	NA	NA	88	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	138.539705499904	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	NA	False	NA	NA	False	NA	NA	NA	87332746	87304683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_87304996_87327828_87327946_87329286_87329379_87331092_87331342_87332725
71585	chr15	-	341	3	NNC	ENSMUSG00000023004.9	novel	526	2	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6415	338	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGAAAAGAGTTTTGTTT	158	False	NA	NA	False	NA	NA	NA	98832319	98829318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829397_98830919_98831077_98832213
71586	chr10	-	906	4	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	38	-178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	707.578185707339	1	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358195	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127356206_127356276_127356786_127356985_127358156
71587	chr15	-	679	1	Intergenic	novelGene_3354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTATTCCCAGCACTTG	NA	False	NA	NA	False	NA	NA	NA	96936422	96935743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_96935700_96936400
71588	chr17	-	962	1	Intergenic	novelGene_277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAAATCACAAGTTCATT	NA	False	NA	NA	False	NA	NA	NA	66289187	66288225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66288200_66289200
71589	chr4	+	640	1	Intergenic	novelGene_1866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCTGTAACTTCTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	62131619	62132259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_62131600_62132300
71590	chrX	-	982	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	77	18	77	-18	multi-exon	FALSE	canonical	3	21	junction_1	0	246	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGCTTCCTTTATACTA	NA	False	NA	NA	False	NA	NA	NA	7794769	7790532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7791453_7794707
71592	chr10	+	1650	9	ISM	ENSMUSG00000005357.10	ENSMUST00000005490.10	2029	10	7287	172	7081	-172	3prime_fragment	TRUE	canonical	0	0	junction_4	0.707106781186548	8	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTAATGAGAGCGTCATGT	NA	False	NA	NA	False	NA	NA	NA	78623616	78650427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_78623799_78624792_78624931_78626998_78627204_78629123_78629167_78631757_78632102_78635862_78636097_78637635_78637831_78648635_78648771_78650253
71594	chr15	+	1733	1	Intergenic	novelGene_3273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAAATGATAAAAACAGG	288	False	NA	NA	False	NA	NA	NA	36760717	36762450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_36760700_36762400
71595	chr15	+	1857	5	FSM	ENSMUSG00000005124.11	ENSMUST00000005255.9	5097	5	70	3170	3	-46	multi-exon	TRUE	canonical	0	0	junction_1	0.433012701892219	2	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCATTTTAAAAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	66763238	66791880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_66763484_66778249_66778530_66784677_66784939_66789125_66789320_66791003
71596	chr19	+	788	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	-1	0	-1	0	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	348	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3512	False	NA	NA	False	NA	NA	NA	4050578	4052103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
71597	chr4	-	1191	8	FSM	ENSMUSG00000028699.10	ENSMUST00000030465.10	1985	8	36	758	36	681	multi-exon	FALSE	canonical	0	0	junction_3	1.48461497791618	19	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAATGAAAATATTTCT	NA	False	NA	NA	False	NA	NA	NA	116024761	116019823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116020233_116020503_116020588_116020824_116020978_116021058_116021158_116021263_116021339_116021515_116021723_116024204_116024270_116024662
71598	chr5	+	1343	9	NIC	ENSMUSG00000029168.15	novel	5191	13	NA	NA	-22	29	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	19.6050854372023	41	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTTCGCCCGTCATTTA	NA	False	NA	NA	False	NA	NA	NA	30869215	30944307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30944046
71599	chr11	-	850	6	NIC	ENSMUSG00000000301.17	novel	961	7	NA	NA	1	-6	combination_of_known_junctions	TRUE	canonical	1	2	junction_5	14.8942942095287	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCACCTCTCTGGTCTCC	NA	False	NA	NA	False	NA	NA	NA	59937310	59861445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59937165
71600	chr4	-	1593	1	FSM	ENSMUSG00000084504.3	ENSMUST00000122555.3	103	1	-1295	-195	-1295	195	mono-exon	FALSE	NA	NA	NA	NA	NA	8	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAAGATTCCAGCCTCCC	6862	False	NA	NA	False	NA	NA	NA	126096365	126094772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_126094800_126096400
71601	chr19	+	1021	8	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-16	-17	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	12.4654624904991	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCAGCTTCAAACCAGG	NA	False	NA	NA	False	NA	NA	NA	6973523	6976395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6973745_6973823_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
71602	chr11	+	1927	1	ISM	ENSMUSG00000034940.16	ENSMUST00000092834.12	7115	20	78207	17	15980	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	18	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTATACACTGTAAAACTG	NA	False	NA	NA	False	NA	NA	NA	83933460	83935387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_83933500_83935400
71603	chr2	-	856	8	FSM	ENSMUSG00000038671.16	ENSMUST00000127988.8	2447	8	77	1514	-7	-32	multi-exon	FALSE	canonical	3	258	junction_2	23.8627025172878	1	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTCTAAGACAAACTTT	6153	False	NA	NA	False	NA	NA	NA	181007120	181001139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
71604	chr9	+	527	2	ISM	ENSMUSG00000032517.17	ENSMUST00000068698.15	1536	4	18217	716	-5105	524	3prime_fragment	FALSE	canonical	3	15	junction_1	0	42	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGGCGTGGCTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	119996989	119997728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119997077_119997288
71605	chr1	+	2298	6	NIC	ENSMUSG00000026170.7	novel	1892	9	NA	NA	-48	-3	intron_retention	FALSE	canonical	1	2	junction_4	2.31516738055805	12	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTTTGGGGGGGTCTT	NA	False	NA	NA	False	NA	NA	NA	74752684	74777048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74753051_74771077_74771269_74774435_74774636_74774712_74775196_74775839_74776551_74776701
71606	chr5	+	1496	4	ISM	ENSMUSG00000018263.12	ENSMUST00000018407.10	3942	9	10302	1283	8810	-1283	3prime_fragment	FALSE	canonical	0	0	junction_1	0.471404520791032	4	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTGGAATTTTCTTAC	NA	False	NA	NA	False	NA	NA	NA	119983029	120022001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_119983183_119991593_119991686_120009247_120009475_120020977
71607	chr8	-	1060	3	ISM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	17	1684	-16	-1064	5prime_fragment	FALSE	canonical	3	51	junction_1	7.5	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCCTCAAGTAAGATCT	NA	False	NA	NA	False	NA	NA	NA	71916282	71911032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71911193_71913889_71914617_71916109
71608	chr8	-	812	2	ISM	ENSMUSG00000007950.10	ENSMUST00000212321.2	800	3	704	-593	704	-27	3prime_fragment	FALSE	canonical	3	62	junction_1	0	12	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATAATAATAAAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	71910847	71909375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71910022_71910681
71609	chr12	+	973	5	NNC	ENSMUSG00000012609.20	novel	655	7	NA	NA	-51	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	20.5228531154905	19	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTAATATGGTACATTT	NA	False	NA	NA	False	NA	NA	NA	85871690	85892457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85871861_85873226_85873403_85878668_85878776_85890551_85890635_85892020
71610	chr17	-	1253	10	FSM	ENSMUSG00000000673.10	ENSMUST00000000687.9	1381	10	-73	201	-10	-5	multi-exon	FALSE	canonical	0	0	junction_3	1.87247772737252	18	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGTACTTGCGAGTTT	6985	False	NA	NA	False	NA	NA	NA	84154251	84138785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_84139151_84139255_84139339_84139755_84139825_84142207_84142354_84142619_84142664_84142903_84142994_84145900_84146008_84146229_84146314_84150624_84150704_84154065
71611	chr7	+	765	4	NNC	ENSMUSG00000035585.17	novel	480	3	NA	NA	48	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	549.298340309405	43	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTATTTTGAGTCCTT	2756	False	NA	NA	False	NA	NA	NA	3697344	3704009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3697414_3697596_3697844_3697976_3698203_3703786
71612	chr11	+	1226	9	FSM	ENSMUSG00000020376.18	ENSMUST00000102776.5	1502	9	270	6	270	-6	multi-exon	FALSE	canonical	3	193	junction_8	44.3931300991494	76	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTATCCTTCGCCAGCGT	NA	False	NA	NA	False	NA	NA	NA	49916444	49995574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49990072_49990167_49995375
71613	chr1	+	1174	1	Intergenic	novelGene_391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGCCTCAGAACTTACCC	NA	False	NA	NA	False	NA	NA	NA	77487127	77488301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_77487100_77488300
71614	chr7	+	701	1	Intergenic	novelGene_2968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAGAAAATTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	49445737	49446438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_49445700_49446400
71616	chr7	+	805	5	NIC	ENSMUSG00000097277.8	novel	720	4	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	35.5457451743524	49	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTGGGTATTATG	NA	False	NA	NA	False	NA	NA	NA	81173344	81181246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_81173425_81178534_81178689_81178904_81179007_81179094_81179276_81180958
71618	chrX	-	799	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	97	5	97	-5	multi-exon	FALSE	canonical	3	131	junction_2	38	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATAACTGCCTGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	101295690	101290991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101291615_101292168_101292294_101295639
71622	chr19	-	1321	1	Antisense	novelGene_ENSMUSG00000010110.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAACTTTTTTTGGTTT	7099	False	NA	NA	False	NA	NA	NA	8733476	8732155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8732200_8733500
71623	chr11	-	1007	6	NNC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	293	-1665	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	358.18799533206	1	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATAAAGGAAAAGTGAATT	NA	False	NA	NA	False	NA	NA	NA	40645845	40641581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40641894_40642101_40642187_40642266_40642344_40642930_40643185_40644634_40644896_40645827
71624	chr4	-	1239	8	FSM	ENSMUSG00000029061.3	ENSMUST00000030937.2	1434	8	195	0	18	0	multi-exon	FALSE	canonical	2	6	junction_5	2.50713268211203	48	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTGTTGTTTCCTGGG	NA	False	NA	NA	False	NA	NA	NA	155737646	155735111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155735341_155735463_155735591_155735695_155735807_155735887_155736053_155736441_155736610_155736678_155736819_155736905_155737043_155737484
71625	chr3	-	1578	9	Antisense	novelGene_ENSMUSG00000041977.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	37	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTCAGATCGGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	87605338	87525165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_87526097_87590789_87590883_87591772_87591871_87593303_87593366_87594227_87594279_87595118_87595298_87596083_87596156_87604649_87604696_87605292
71626	chr5	+	1666	1	Intergenic	novelGene_680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATAATTCTATGGATGTA	NA	False	NA	NA	False	NA	NA	NA	30837412	30839078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_30837400_30839100
71627	chr10	-	1805	1	Antisense	novelGene_ENSMUSG00000037990.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTTAGCTATTTCCAGC	NA	False	NA	NA	False	NA	NA	NA	58974548	58972743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_58972700_58974500
71628	chr7	+	901	5	FSM	ENSMUSG00000038695.14	ENSMUST00000118628.8	864	5	-33	-4	6	0	multi-exon	FALSE	canonical	3	36	junction_1	14.4460202131937	115	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGCCTGGGCTCAGCTC	4774	False	NA	NA	False	NA	NA	NA	44117435	44121076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120536_44120732_44120838
71630	chr5	-	740	5	Antisense	novelGene_ENSMUSG00000019054.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2227	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCACTTCCGGCATCGACC	NA	False	NA	NA	False	NA	NA	NA	136995073	136990961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_136991081_136991850_136991985_136993945_136994022_136994416_136994523_136994768
71632	chr8	-	615	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	17	0	17	0	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	225	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	NA	False	NA	NA	NA	70959059	70956944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
71633	chr4	+	276	3	Intergenic	novelGene_1853	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_2	8.5	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTATAAAGGACCTTC	0	True	NA	NA	False	NA	NA	NA	53341419	53350974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_53341538_53342594_53342685_53350906
71635	chr6	-	1049	8	NNC	ENSMUSG00000030138.9	novel	4345	23	NA	NA	-3	-8450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	139.953782458674	1	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGACGGGATGGAACCT	8344	False	NA	NA	False	NA	NA	NA	118396376	118382173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_118382181_118388935_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
71636	chr6	-	1445	1	ISM	ENSMUSG00000030256.12	ENSMUST00000032386.11	6133	5	2920	2951	2664	2311	mono-exon	FALSE	NA	NA	NA	NA	NA	25	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGTACCCAATGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	145808364	145806919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_145806900_145808400
71637	chr3	-	521	2	NNC	ENSMUSG00000027984.9	novel	1789	8	NA	NA	22104	-133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTGAAATCTGTGCTACC	NA	False	NA	NA	False	NA	NA	NA	131043569	131027200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_131027657_131043504
71638	chr17	+	1035	8	FSM	ENSMUSG00000073468.13	ENSMUST00000154553.2	1049	8	13	1	-7	1	multi-exon	FALSE	canonical	3	730	junction_5	48.6457414710199	1512	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTCTGGATCAACTGT	2936	False	NA	NA	False	NA	NA	NA	8529946	8546273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
71640	chr5	-	1352	1	Intergenic	novelGene_676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGTGTATGTGAA	NA	False	NA	NA	False	NA	NA	NA	28598965	28597613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_28597600_28599000
71642	chr4	-	682	6	NIC	ENSMUSG00000028447.12	novel	973	7	NA	NA	3	-170	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	369.599567099314	11	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGAACGACCACTAA	20	True	NA	NA	False	NA	NA	NA	41723134	41714967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41723034
71643	chr11	+	910	2	FSM	ENSMUSG00000086015.2	ENSMUST00000146868.2	1269	2	26	333	26	-333	multi-exon	TRUE	canonical	3	111	junction_1	0	330	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTATTATTTATTTAT	1052	False	NA	NA	False	NA	NA	NA	95749716	95751537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95749909_95750819
71644	chr12	-	1034	8	NNC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	20	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	68.6038613776103	2	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAATATATATATCTGAA	NA	False	NA	NA	False	NA	NA	NA	55126869	55092470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109904_55126794
71645	chr2	+	1115	2	NNC	ENSMUSG00000086152.2	novel	714	3	NA	NA	18278	303	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	0	23	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCATGGGGTCTAGTCAG	NA	False	NA	NA	False	NA	NA	NA	162982803	162986182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162983125_162985388
71646	chr17	-	802	4	FSM	ENSMUSG00000024194.17	ENSMUST00000236906.2	737	4	93	-158	20	0	multi-exon	FALSE	canonical	3	17	junction_2	443.157609284402	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9450	False	NA	NA	False	NA	NA	NA	27158345	27156946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27157151_27157391_27157442_27157700_27157761_27157857
71647	chr11	+	662	3	NIC	ENSMUSG00000020803.4	novel	981	4	NA	NA	13	-230	combination_of_known_splicesites	FALSE	canonical	3	23	junction_2	739	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATTAAGTTTTTTAACA	NA	False	NA	NA	False	NA	NA	NA	72098385	72100611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72098595_72099078_72099161_72100240
71648	chr16	-	1833	11	FSM	ENSMUSG00000022783.12	ENSMUST00000023468.6	2416	11	14	569	8	-569	multi-exon	FALSE	canonical	1	1	junction_3	2.24722050542442	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACACTTGCTATTGTCTT	NA	False	NA	NA	False	NA	NA	NA	16647163	16571448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16571742_16580885_16581032_16584832_16584950_16595186_16595379_16598484_16598638_16599608_16599783_16601598_16601805_16605078_16605263_16610360_16610528_16646883_16646980_16647058
71650	chr15	+	1661	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	70	23	70	-23	multi-exon	FALSE	canonical	3	355	junction_1	0	181	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTCTAATGGATGTGAC	NA	False	NA	NA	False	NA	NA	NA	102187958	102190166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102188065_102188611
71651	chr3	+	955	1	Intergenic	novelGene_3181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCTCTGTCCCAAGCGCA	NA	False	NA	NA	False	NA	NA	NA	121239091	121240046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_121239100_121240000
71653	chr16	-	590	3	NNC	ENSMUSG00000022671.14	novel	1035	3	NA	NA	-234	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	281.5	3	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	NA	False	NA	NA	NA	15680820	15666306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15666594_15680261_15680356_15680611
71654	chr17	-	841	5	FSM	ENSMUSG00000061207.12	ENSMUST00000161885.8	805	5	-41	5	19	-4	multi-exon	FALSE	canonical	0	0	junction_3	37.4457941563535	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTACTTCTTTCTGTGTC	5610	False	NA	NA	False	NA	NA	NA	35055884	35042974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35055405_35055543_35055752
71655	chr11	-	735	5	NNC	ENSMUSG00000078622.9	novel	704	6	NA	NA	-703	117	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	300.586510010014	1	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAATCATCAGTGCGTTA	3813	False	NA	NA	False	NA	NA	NA	106094434	106091487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106091824_106092845_106093005_106093209_106093320_106093553_106093613_106094363
71656	chr9	-	363	1	Intergenic	novelGene_994	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGATAAGCAAAGCCCAGAAT	NA	False	NA	NA	False	NA	NA	NA	20338858	20338495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_20338500_20338900
71657	chr13	+	1580	1	ISM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	40347	8	40158	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	11	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCAAGTGGTGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	81899806	81901386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_81899800_81901400
71658	chr19	-	1333	4	ISM	ENSMUSG00000042401.9	ENSMUST00000238290.2	2164	15	133723	15245	-10108	0	internal_fragment	FALSE	canonical	3	64	junction_3	5.73488351136175	1	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	42286501	42271970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_42272706_42275611_42275655_42276291_42276438_42286092
71659	chr17	-	610	6	ISM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	6486	523	6174	-523	3prime_fragment	FALSE	canonical	3	649	junction_5	50.0215953364144	1	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATGTGTTTGGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	8360443	8347430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427
71660	chr11	-	790	3	FSM	ENSMUSG00000042148.9	ENSMUST00000125702.2	706	3	-7	-77	-7	77	multi-exon	FALSE	canonical	3	274	junction_2	15.5	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCCTGCCTGTTTCCTT	4998	False	NA	NA	False	NA	NA	NA	63970301	63962146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_63962663_63964362_63964497_63970161
71661	chr17	-	373	4	NNC	ENSMUSG00000023944.15	novel	351	3	NA	NA	24	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4357.45677609722	8	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45883457	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878791_45882501_45882546_45882690_45882838_45883359
71664	chr3	-	888	7	ISM	ENSMUSG00000039103.13	ENSMUST00000199423.5	2016	13	2205	6366	-8	24	internal_fragment	FALSE	canonical	1	2	junction_1	2.14087209644419	1	20	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGACAAAAAATGGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	151958743	151949568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_151949661_151952722_151952912_151953569_151953741_151953816_151954006_151955296_151955339_151958444_151958594_151958687
71666	chr16	-	751	1	ISM	ENSMUSG00000087141.2	ENSMUST00000130481.2	7140	4	50155	50	50155	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAGCCAGTTAAAAAGGT	4071	False	NA	NA	False	NA	NA	NA	45780426	45779675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_45779700_45780400
71667	chr11	-	653	2	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	2786	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8950	False	NA	NA	False	NA	NA	NA	102885588	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885144_102885206
71668	chr2	-	2006	1	ISM	ENSMUSG00000068966.11	ENSMUST00000091037.3	6510	2	16093	4016	16093	1795	mono-exon	FALSE	NA	NA	NA	NA	NA	7	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGGAGCAGTGCTTTTCA	2702	False	NA	NA	False	NA	NA	NA	33302141	33300135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_33300100_33302100
71669	chr9	+	784	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	-109	1638	-107	-1638	multi-exon	TRUE	canonical	3	18	junction_1	18.4571575998762	222	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGCATTTGTTATCTC	-8	True	NA	NA	False	NA	NA	NA	4309725	4330073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
71670	chr2	-	951	3	Genic_Genomic	ENSMUSG00000082152.2	novel	745	1	NA	NA	-482	5735	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTGATCTTTATTTTGT	3610	False	NA	NA	False	NA	NA	NA	75464208	75457246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_75457815_75463228_75463597_75464193
71671	chr18	+	1845	4	FSM	ENSMUSG00000056812.15	ENSMUST00000237770.2	3296	4	1559	-108	595	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTGCAGGTTGCATTC	NA	False	NA	NA	False	NA	NA	NA	64398284	64405311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_64398722_64400017_64400141_64402496_64403055_64404584
71672	chr4	-	1156	7	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	-207	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	164.596138742344	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGAGAACAAAAAGGTCTG	9445	False	NA	NA	False	NA	NA	NA	155975873	155973327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155973626_155973890_155974058_155974240_155974364_155974955_155975127_155975209_155975360_155975508_155975697_155975814
71673	chr17	-	2574	1	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCATGCGCGGGGGCTTTGC	NA	False	NA	NA	False	NA	NA	NA	5348724	5346150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_5346200_5348700
71675	chr5	+	854	6	FSM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	9	4	9	0	multi-exon	FALSE	canonical	3	705	junction_1	67.372397908936	4067	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	145077180	145084884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
71677	chr2	-	1065	1	ISM	ENSMUSG00000027204.14	ENSMUST00000028633.13	9847	66	204714	13	204401	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTTAAAGTATCCCTGC	NA	False	NA	NA	False	NA	NA	NA	125143591	125142526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_125142500_125143600
71678	chr12	+	2454	5	FSM	ENSMUSG00000020638.9	ENSMUST00000020969.5	3200	5	742	4	-563	-4	multi-exon	FALSE	canonical	2	4	junction_3	0.433012701892219	6	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACCCTGTTCGTCATCAT	NA	False	NA	NA	False	NA	NA	NA	26519944	26529832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_26520026_26521404_26521520_26523994_26524197_26527004_26527239_26528010
71679	chr4	+	351	1	Intergenic	novelGene_1822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTTGGCTGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	40720155	40720506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_40720200_40720500
71683	chr4	+	572	4	NNC	ENSMUSG00000047613.11	novel	1098	4	NA	NA	-37	72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	388.891015867199	1	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTAGAGCTGCGGGCGC	NA	False	NA	NA	False	NA	NA	NA	154044211	154046040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_154044320_154044987_154045274_154045365_154045450_154045946
71684	chr9	-	1024	1	ISM	ENSMUSG00000070287.4	ENSMUST00000093792.4	1590	2	17478	401	-697	-399	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTTTGGTTAGCACAG	NA	False	NA	NA	False	NA	NA	NA	100435665	100434641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_100434600_100435700
71685	chr4	-	778	1	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	-2	-2753	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTTAAAAGGAGATTGAAGA	NA	False	NA	NA	False	NA	NA	NA	123033725	123032947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_123032900_123033700
71687	chr4	+	1370	8	ISM	ENSMUSG00000028463.15	ENSMUST00000030183.10	2023	11	1932	17	-39	-17	3prime_fragment	FALSE	canonical	0	0	junction_1	0.989743318610787	3	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTCCTAGTAAAACTC	23	True	NA	NA	False	NA	NA	NA	43508897	43513712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_43509036_43509117_43509211_43510196_43510264_43511826_43511985_43512141_43512278_43512411_43512439_43512851_43512934_43513043
71688	chr13	+	1649	2	FSM	ENSMUSG00000074634.13	ENSMUST00000178948.2	1648	2	0	-1	0	1	multi-exon	FALSE	canonical	0	0	junction_1	0	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTTTCTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	120068185	120071995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_120068567_120070727
71689	chr16	+	1319	7	FSM	ENSMUSG00000022957.21	ENSMUST00000232198.2	1167	7	-6	-146	-6	10	multi-exon	FALSE	canonical	2	3	junction_2	3.24893144826965	41	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACTGTGTAGGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	91700944	91709234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91701102_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
71690	chr11	-	2241	14	NNC	ENSMUSG00000018907.11	novel	2422	14	NA	NA	-9	-14	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	0.769230769230769	2	38	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTCCCTTAAAGGTTTC	7715	False	NA	NA	False	NA	NA	NA	70213283	70206449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70206877_70206995_70207164_70207271_70207372_70208411_70208535_70208632_70208803_70208996_70209084_70210459_70210670_70210766_70210911_70211555_70211717_70211857_70211966_70212053_70212177_70212257_70212340_70212510_70212713_70213147
71691	chr17	+	1491	6	NNC	ENSMUSG00000040482.17	novel	1519	7	NA	NA	-11	-19	intron_retention	FALSE	non_canonical	0	0	junction_1	89.6022321150539	1	80	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGTGTTTCTAAGTGGGT	3028	False	NA	NA	False	NA	NA	NA	35056046	35058143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35056194_35056368_35056762_35056876_35057422_35057529_35057660_35057788_35057884_35057962
71692	chr19	+	1560	1	Genic_Genomic	ENSMUSG00000025019.18	novel	NA	NA	NA	NA	3289	682	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTACACTTCCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	41574097	41575657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_41574100_41575700
71693	chr5	+	1099	5	Antisense	novelGene_ENSMUSG00000104641.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGCGCAACAGATTGTAGC	NA	False	NA	NA	False	NA	NA	NA	65607146	65650239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_65607777_65610521_65610672_65617866_65617919_65625738_65625843_65650076
71694	chr8	-	1150	1	NIC	ENSMUSG00000058833.12	novel	725	4	NA	NA	54	22	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAAACTGTGACCATATT	NA	False	NA	NA	False	NA	NA	NA	70959022	70957872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70957900_70959000
71696	chr2	+	703	6	NNC	ENSMUSG00000027285.14	novel	3154	6	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	106.41353297396	13	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	NA	NA	NA	120439905	120452041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448400_120451801
71697	chr5	+	539	3	FSM	ENSMUSG00000047843.17	ENSMUST00000056578.7	955	3	237	179	237	0	multi-exon	FALSE	canonical	3	246	junction_1	16.5	199	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTAGCTTGTTCTGCTC	1866	False	NA	NA	False	NA	NA	NA	144192280	144201205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_144192330_144192619_144192723_144200818
71698	chr10	+	2329	2	Intergenic	novelGene_3527	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	3	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTCTTTGTGTTTATTA	NA	False	NA	NA	False	NA	NA	NA	111224666	111233053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_111224698_111230755
71700	chr7	+	623	1	FSM	ENSMUSG00000025326.13	ENSMUST00000200949.2	4254	1	1270	2361	1270	-2361	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCACTTCTCCTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	58927952	58928575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_58928000_58928600
71702	chr1	+	869	4	FSM	ENSMUSG00000073633.10	ENSMUST00000097672.4	901	4	28	4	16	-4	multi-exon	FALSE	canonical	0	0	junction_1	27.3536509852382	105	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTTGTGTTCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	84817589	84878204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_84817690_84858812_84858922_84874210_84874384_84877717
71703	chr1	-	552	5	NNC	ENSMUSG00000073481.10	novel	633	5	NA	NA	-1541	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	410.378179244462	60	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	NA	False	NA	NA	NA	184556773	184545888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184556694
71704	chr2	-	551	3	Intergenic	novelGene_2828	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	1	3	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGATTGTTTGGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	174122993	174108226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_174108535_174109798_174109963_174122914
71705	chr5	+	524	1	ISM	ENSMUSG00000039095.9	ENSMUST00000036177.9	3539	2	4438	1511	4438	-1511	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTGTGTTTCAGAGG	2039	False	NA	NA	False	NA	NA	NA	28375129	28375653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_28375100_28375700
71706	chr10	-	513	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-42	693	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	27.5	12	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34109569	34106209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_34106388_34106902_34107071_34109402
71707	chr15	+	616	6	NNC	ENSMUSG00000033020.8	novel	885	5	NA	NA	28	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	1011.15783139923	17	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCACCCCCTCTCCCCGTT	NA	False	NA	NA	False	NA	NA	NA	79025593	79035962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79025635_79028793_79028864_79030252_79030384_79034986_79035115_79035535_79035608_79035788
71708	chr10	-	1405	1	Intergenic	novelGene_3458	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCACTGCTACCGTCTAC	NA	False	NA	NA	False	NA	NA	NA	63145947	63144542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_63144500_63145900
71709	chr3	+	602	1	NIC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	3061	-4321	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGATTTTGAAAAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	151919218	151919820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_151919200_151919800
71710	chrX	-	1015	1	Antisense	novelGene_ENSMUSG00000086877.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCTGCAGCCCTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	20829362	20828347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20828300_20829400
71712	chr9	-	1735	8	ISM	ENSMUSG00000041268.18	ENSMUST00000127880.8	4288	16	1212	30887	1212	-1201	internal_fragment	TRUE	canonical	3	44	junction_1	8.18410604994429	8	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCAATCTACAGTGAACT	NA	False	NA	NA	False	NA	NA	NA	54380255	54353815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_54354350_54358080_54358353_54358885_54359126_54364907_54365083_54366137_54366322_54368222_54368402_54379475_54379543_54380171
71713	chr7	-	2068	4	FSM	ENSMUSG00000060402.9	ENSMUST00000078686.8	2372	4	13	291	-1	0	multi-exon	TRUE	canonical	1	5	junction_3	4.02768199119819	20	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGTCTACTCCAGGCTG	NA	False	NA	NA	False	NA	NA	NA	34512098	34374183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_34375670_34376059_34376098_34447486_34447703_34511770
71715	chr16	-	2344	1	NIC	ENSMUSG00000003955.9	novel	718	5	NA	NA	34	-22720	mono-exon	FALSE	NA	NA	NA	NA	NA	2	70	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAATAGATACAACTTTT	NA	False	NA	NA	False	NA	NA	NA	35891851	35889507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_35889500_35891900
71716	chr5	+	340	1	Antisense	novelGene_ENSMUSG00000060419.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAACAGGCTCCAGTAAC	743	False	NA	NA	False	NA	NA	NA	129205072	129205412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_129205100_129205400
71717	chr17	-	903	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	43	-3	-14	3	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	84	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTAGGAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	66383991	66344130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
71718	chr13	-	798	5	ISM	ENSMUSG00000021684.18	ENSMUST00000162882.2	2060	9	11801	618	-12	155	3prime_fragment	FALSE	canonical	1	2	junction_3	2.1650635094611	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCTTTGAATCACTCAG	NA	False	NA	NA	False	NA	NA	NA	95170773	95162455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_95162738_95164125_95164256_95166820_95166989_95169337_95169459_95170676
71721	chr7	-	564	3	NNC	ENSMUSG00000030717.10	novel	829	3	NA	NA	-18	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1858	7	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCGTGTGTTGTGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	126224665	126222415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126222742_126224138_126224206_126224494
71722	chr4	+	1225	8	NNC	ENSMUSG00000058046.2	novel	1783	15	NA	NA	5644	-5212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	0.494871659305393	2	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAGAGCCACAGGCCTC	NA	False	NA	NA	False	NA	NA	NA	62449249	62461018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62449644_62450488_62450642_62450752_62450898_62454747_62454806_62457099_62457201_62458655_62458720_62460039_62460204_62460872
71724	chr8	-	1812	1	Intergenic	novelGene_1789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTCCCAAAACCCCCACA	NA	False	NA	NA	False	NA	NA	NA	128005898	128004086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_128004100_128005900
71728	chr7	-	507	2	Genic_Genomic	ENSMUSG00000099647.2	novel	321	1	NA	NA	-46	256	multi-exon	FALSE	canonical	3	158	junction_1	0	19	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	54062272	54061649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_54062012_54062127
71729	chr13	-	881	4	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	2.49443825784929	13	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATAGTTAATGAACACCC	NA	False	NA	NA	False	NA	NA	NA	59059827	59040995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_59041314_59056775_59056897_59058134_59058480_59059730
71731	chr7	-	1098	8	NNC	ENSMUSG00000053291.16	novel	1192	8	NA	NA	21	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	253.786588796692	8	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGCCTCTGTCATTCT	NA	False	NA	NA	False	NA	NA	NA	26878280	26867849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_26868178_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
71733	chr1	-	411	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	15	12	15	-12	multi-exon	FALSE	canonical	3	610	junction_1	1	4268	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGATTTTAATTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	92569692	92564878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_92565126_92567408_92567482_92569601
71734	chr4	-	1035	1	Intergenic	novelGene_1976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGAGGTAGGAGGATCAG	NA	False	NA	NA	False	NA	NA	NA	132831773	132830738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_132830700_132831800
71735	chr12	+	1061	1	Intergenic	novelGene_4452	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAATTGGATTTAAAAAAAA	5941	False	NA	NA	False	NA	NA	NA	100992570	100993631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_100992600_100993600
71737	chr19	-	1269	4	FSM	ENSMUSG00000040414.9	ENSMUST00000046038.9	1535	4	266	0	245	0	multi-exon	FALSE	canonical	3	130	junction_2	77.3146529162199	96	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTGGGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	43663054	43652239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_43653083_43654210_43654268_43655353_43655583_43662914
71738	chr3	+	1168	1	Intergenic	novelGene_3157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTCAAGGCCAGCCTG	7521	False	NA	NA	False	NA	NA	NA	95145455	95146623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_95145500_95146600
71739	chr4	-	975	3	ISM	ENSMUSG00000044813.16	ENSMUST00000147926.8	1609	5	35257	31	35257	-31	3prime_fragment	FALSE	canonical	3	103	junction_2	3	25	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTGTGTAAATAAAATAGT	NA	False	NA	NA	False	NA	NA	NA	45447545	45423308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_45424124_45444678_45444799_45447505
71741	chr16	+	679	4	NIC	ENSMUSG00000097290.10	novel	701	6	NA	NA	3	-6	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	66.3525935187666	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAGATGGGTTGAAAGG	NA	False	NA	NA	False	NA	NA	NA	21613122	21627784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_21613197_21614599_21614726_21619464_21619587_21627427
71742	chrX	-	1731	2	Intergenic	novelGene_4075	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAACAAAACAAAACATGT	NA	False	NA	NA	False	NA	NA	NA	148177106	148175320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_148176306_148176360
71743	chr10	+	658	3	ISM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	531	-17	531	-2	3prime_fragment	FALSE	canonical	3	16591	junction_2	626	1290	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTGCTGTGTGCCC	7477	False	NA	NA	False	NA	NA	NA	75771937	75773576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_75772280_75773140_75773289_75773408
71744	chr7	+	561	3	FSM	ENSMUSG00000033429.11	ENSMUST00000206194.2	532	3	-35	6	0	-6	multi-exon	FALSE	canonical	3	108	junction_2	103	601	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACATTCATGTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	64042487	64061863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_64042592_64049916_64050093_64061582
71745	chr9	-	1071	9	Intergenic	novelGene_1108	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	38	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCGTGAGGGGGGAGGGGG	NA	False	NA	NA	False	NA	NA	NA	72219395	72182184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_72182306_72199060_72199264_72203252_72203316_72205961_72206131_72208982_72209047_72209146_72209287_72215230_72215349_72216531_72216689_72219359
71747	chr7	-	2080	1	Intergenic	novelGene_3016	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTATGTCCCTCACTTC	NA	False	NA	NA	False	NA	NA	NA	107012432	107010352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_107010400_107012400
71748	chr11	+	1747	5	FSM	ENSMUSG00000018217.13	ENSMUST00000018361.10	1800	5	53	0	53	0	multi-exon	FALSE	canonical	0	0	junction_1	1.78535710713571	18	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTCTCTCCCGGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	63022390	63050373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_63022481_63023950_63024071_63025246_63025347_63041944_63042086_63049077
71749	chr5	+	1304	1	NIC	ENSMUSG00000038525.17	novel	1167	6	NA	NA	10780	-1020	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGACAGAAGGACTACTGA	NA	False	NA	NA	False	NA	NA	NA	21864290	21865594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_21864300_21865600
71751	chr13	-	746	5	NNC	ENSMUSG00000021460.18	novel	3235	4	NA	NA	-68	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	206.970257525085	50	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATTCCCGGACCAAATCT	NA	False	NA	NA	False	NA	NA	NA	53083562	53064259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_53064629_53066948_53067098_53073036_53073125_53073234_53073303_53083490
71752	chr5	-	1222	2	ISM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	27605	-2	690	2	3prime_fragment	FALSE	canonical	3	441	junction_1	0	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTGCATTGCAGCTGG	NA	False	NA	NA	False	NA	NA	NA	113882966	113880504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_113881365_113882604
71753	chr7	+	1347	2	ISM	ENSMUSG00000109814.2	ENSMUST00000211504.2	662	3	-53	3609	-53	-3609	5prime_fragment	FALSE	canonical	2	6	junction_1	0	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACACCACTGAGGACCT	1683	False	NA	NA	False	NA	NA	NA	122630584	122662053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_122630774_122660895
71757	chrX	-	590	1	Genic_Genomic	ENSMUSG00000072945.4	novel	NA	NA	NA	NA	2583	368	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATGGAATGATGTT	NA	False	NA	NA	False	NA	NA	NA	138680519	138679929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_138679900_138680500
71761	chr11	+	2387	1	Antisense	novelGene_ENSMUSG00000020422.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGCCCCCTGATCCCT	NA	False	NA	NA	False	NA	NA	NA	8485278	8487665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_8485300_8487700
71762	chr9	+	1106	2	NNC	ENSMUSG00000032348.7	novel	743	6	NA	NA	68	-9680	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACAGTGTACTTAGATAT	NA	False	NA	NA	False	NA	NA	NA	78099296	78103557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_78099347_78102501
71763	chr5	-	1137	5	NNC	ENSMUSG00000040351.12	novel	2572	19	NA	NA	-30977	11525	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_4	33.9742549587184	16	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCATTTTCTTGGAATT	NA	False	NA	NA	False	NA	NA	NA	3783109	3772154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3782853
71765	chr2	-	1911	1	ISM	ENSMUSG00000026771.15	ENSMUST00000132484.7	6595	11	63971	3	7090	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTAATTTTCTTGCTTGG	NA	False	NA	NA	False	NA	NA	NA	23398145	23396234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_23396200_23398100
71766	chr1	+	1119	1	Genic_Genomic	ENSMUSG00000026036.18	novel	NA	NA	NA	NA	10	-1294	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTGTATGGAGGCTATAA	NA	False	NA	NA	False	NA	NA	NA	58484796	58485915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_58484800_58485900
71767	chr13	-	2531	1	Intergenic	novelGene_1478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTGTAGAAGCCAGAAC	NA	False	NA	NA	False	NA	NA	NA	76341972	76339441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_76339400_76342000
71768	chr17	-	1679	1	Antisense	novelGene_ENSMUSG00000023902.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTCCCTGCCTGACCCA	7666	False	NA	NA	False	NA	NA	NA	23821502	23819823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_23819800_23821500
71769	chr6	+	1897	5	ISM	ENSMUSG00000030231.12	ENSMUST00000203483.2	1845	10	3427	7356	-1006	439	internal_fragment	FALSE	canonical	3	87	junction_3	1.11803398874989	2	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAGAGCCACAGGAAACG	NA	False	NA	NA	False	NA	NA	NA	140526475	140535480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_140527815_140529558_140529675_140532034_140532227_140534900_140535042_140535371
71770	chr7	-	1448	7	NNC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.9338912036228	3	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	NA	False	NA	NA	NA	44711829	44703007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44703724_44703942_44704072_44706166_44706309_44709593_44709811_44710164_44710317_44711011_44711076_44711801
71771	chr11	-	1354	7	NIC	ENSMUSG00000034449.8	novel	1254	7	NA	NA	4	130	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	15.7585955380971	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACCTTCAGAAGTATCT	NA	False	NA	NA	False	NA	NA	NA	84719816	84711551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716348_84719576
71772	chr5	+	1077	5	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	0	-2	intron_retention	FALSE	canonical	3	89	junction_4	5.61248608016091	117	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTCTGCCTGATTACAG	NA	False	NA	NA	False	NA	NA	NA	31409065	31410539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31409448_31409535_31409596_31409708_31410134_31410238_31410347_31410437
71773	chr9	-	1136	4	NIC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1521	-1	intron_retention	FALSE	canonical	3	59	junction_3	31.4360020076062	197	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTGTGTCTGTCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	20789502	20785104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_20785369_20786461_20786998_20787687_20787866_20789344
71774	chr9	+	936	4	NNC	ENSMUSG00000032060.11	novel	1117	4	NA	NA	65	-2	intron_retention	FALSE	canonical	0	0	junction_1	8.33999733546453	74	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACAAACCTGCCTCGTGT	NA	False	NA	NA	False	NA	NA	NA	50662689	50667928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_50662769_50664380_50664778_50665811_50665935_50667591
71775	chr17	-	704	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	28	0	28	0	multi-exon	FALSE	canonical	3	2001	junction_1	127.206743357243	9699	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	NA	NA	NA	24943424	24941033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
71776	chr7	-	1238	4	NNC	ENSMUSG00000086477.4	novel	1133	4	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8.64098759787715	16	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACCCTCTAATTGGA	9367	False	NA	NA	False	NA	NA	NA	98352132	98331542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98332125_98342245_98342478_98342554_98342809_98351962
71778	chr14	-	714	1	ISM	ENSMUSG00000037580.11	ENSMUST00000089959.7	2775	6	34780	25	7239	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTAAAGTGTTTTTAA	3694	False	NA	NA	False	NA	NA	NA	47392090	47391376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_47391400_47392100
71779	chrX	-	443	4	ISM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	9782	213	9782	-213	3prime_fragment	FALSE	canonical	3	257	junction_1	26.1576417557513	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATGAAACAGAGTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	52789881	52785927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849
71780	chr10	+	1096	3	Antisense	novelGene_ENSMUSG00000015305.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACAATTTTGCCCAGTTG	NA	False	NA	NA	False	NA	NA	NA	8713635	8718560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_8713739_8714339_8714449_8717676
71781	chr19	-	1414	13	NNC	ENSMUSG00000025006.19	novel	2785	22	NA	NA	3	2597	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.6940704443547	4	25	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAACTGGTTTTTTTTTTG	9892	False	NA	NA	False	NA	NA	NA	40502191	40338175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40338477_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
71783	chr16	-	501	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	38	-43	38	43	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGTTGC	NA	False	NA	NA	False	NA	NA	NA	20641352	20640851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20640900_20641400
71785	chr10	-	1132	3	FSM	ENSMUSG00000071324.12	ENSMUST00000162405.8	1135	3	3	0	3	0	multi-exon	FALSE	canonical	3	5	junction_2	0.5	40	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAATCCTGAGTCTCATC	NA	False	NA	NA	False	NA	NA	NA	41894373	41875803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_41876495_41887763_41888020_41894188
71786	chr9	-	1483	4	Antisense	novelGene_ENSMUSG00000097574.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCAGAGCCGGGCCGTA	NA	False	NA	NA	False	NA	NA	NA	78086129	78083219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_78083413_78083852_78084024_78084279_78084374_78085104
71787	chr3	-	1404	6	NNC	ENSMUSG00000039131.16	novel	1596	6	NA	NA	345	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	12.1885191881541	25	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTTGATTACAACAGCTT	NA	False	NA	NA	False	NA	NA	NA	151871042	151799491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151870635
71788	chrX	+	2019	11	ISM	ENSMUSG00000025592.18	ENSMUST00000113379.8	2512	14	258723	111	-168104	-111	3prime_fragment	FALSE	canonical	0	0	junction_2	3.104834939252	1	87	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTAAATTTGCCTTCT	NA	False	NA	NA	False	NA	NA	NA	112465941	112741493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_112466058_112549590_112549723_112614405_112614565_112633941_112634115_112659967_112660104_112662516_112662601_112724539_112724689_112724813_112724962_112727319_112727467_112729645_112729712_112740784
71791	chr19	-	661	1	NIC	ENSMUSG00000025092.8	novel	1400	7	NA	NA	1742	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGTCAGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	58808811	58808150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_58808200_58808800
71792	chr9	+	1078	2	ISM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	6700	0	-4497	5prime_fragment	FALSE	canonical	3	165	junction_1	0	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTTTGGTGGCAGTTCC	NA	False	NA	NA	False	NA	NA	NA	35179160	35180561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_35179375_35179697
71793	chr7	-	989	2	FSM	ENSMUSG00000046792.9	ENSMUST00000207957.2	880	2	-38	-71	7	4	multi-exon	FALSE	canonical	3	164	junction_1	0	137	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCGAAGTTCATGCCGAC	9633	False	NA	NA	False	NA	NA	NA	6158963	6145280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_6146150_6158843
71794	chr7	+	413	1	ISM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	22058	895	22058	-895	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGACGAGCTGATGTGC	1319	False	NA	NA	False	NA	NA	NA	128147397	128147810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_128147400_128147800
71797	chr8	+	2165	5	FSM	ENSMUSG00000031828.10	ENSMUST00000034287.10	2181	5	-16	32	-10	-32	multi-exon	FALSE	canonical	3	4	junction_3	6.86931583201704	16	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTAAATATTCTTCACA	NA	False	NA	NA	False	NA	NA	NA	120588994	120603702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120589187_120591741_120591819_120596360_120597432_120601113_120601272_120603035
71798	chr11	+	632	1	Antisense	novelGene_ENSMUSG00000018849.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTCTTCAAACCAACAAG	NA	False	NA	NA	False	NA	NA	NA	35729227	35729859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_35729200_35729900
71800	chr1	+	981	5	ISM	ENSMUSG00000025934.16	ENSMUST00000121676.8	894	8	16569	-188	3655	188	3prime_fragment	FALSE	canonical	3	69	junction_1	2	321	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACTCTGGAGTATTCGAA	NA	False	NA	NA	False	NA	NA	NA	21327399	21335433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
71803	chr2	+	511	5	NNC	ENSMUSG00000027374.13	novel	3228	11	NA	NA	-5	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	561.46343380491	270	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	4159	False	NA	NA	False	NA	NA	NA	127429333	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436459_127445785
71804	chr7	-	748	2	FSM	ENSMUSG00000010760.6	ENSMUST00000010904.5	757	2	3	6	3	-6	multi-exon	FALSE	canonical	3	98	junction_1	0	132	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAACTGTGTGGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	143056275	143055287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143055554_143055793
71806	chr18	+	680	2	NIC	ENSMUSG00000087590.3	novel	430	3	NA	NA	7	-1	intron_retention	FALSE	canonical	3	425	junction_1	0	298	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACACGTGTATGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	33927951	33929038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_33928499_33928905
71807	chr8	-	1393	1	ISM	ENSMUSG00000031583.14	ENSMUST00000033991.13	6262	34	149230	521	94253	-521	mono-exon	FALSE	NA	NA	NA	NA	NA	4	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAAATAAACACATTAT	5483	False	NA	NA	False	NA	NA	NA	33726325	33724932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_33724900_33726300
71808	chr8	-	468	1	ISM	ENSMUSG00000031583.14	ENSMUST00000033991.13	6262	34	150673	3	95696	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAAAAAGCCTCAGATAT	6926	False	NA	NA	False	NA	NA	NA	33724882	33724414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_33724400_33724900
71810	chr2	-	2332	6	ISM	ENSMUSG00000054580.15	ENSMUST00000112525.5	7112	30	125550	1028	-3451	-1028	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	36	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAAGAGGTTACTTGCCG	5454	False	NA	NA	False	NA	NA	NA	60258102	60248914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_60250647_60250751_60250785_60252948_60253126_60254602_60254720_60255695_60255837_60257970
71811	chr8	-	710	1	ISM	ENSMUSG00000040197.5	ENSMUST00000033888.5	1802	6	5272	363	5272	-363	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCTATCTGTACTTTT	NA	False	NA	NA	False	NA	NA	NA	3899037	3898327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_3898300_3899000
71812	chr8	+	2230	1	Intergenic	novelGene_1709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAACCCATGTCCAAGAG	1074	False	NA	NA	False	NA	NA	NA	94181310	94183540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_94181300_94183500
71813	chr4	-	1009	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9872	-6	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	187.893586904929	315	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAATTTGTTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	101760858	101747222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760767
71815	chr5	-	1492	3	ISM	ENSMUSG00000029449.12	ENSMUST00000031401.6	2208	5	12071	171	11775	-171	3prime_fragment	TRUE	canonical	1	1	junction_2	1.5	11	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAAGCCCCTGCTGTCCCC	NA	False	NA	NA	False	NA	NA	NA	123258684	123256411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_123257658_123258358_123258494_123258573
71819	chr6	+	527	2	NNC	ENSMUSG00000004285.13	novel	703	2	NA	NA	27	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	78	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATGGGTACTGGTATGG	-5	True	NA	NA	False	NA	NA	NA	29467743	29470506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29467946_29470181
71820	chr12	+	1952	1	Intergenic	novelGene_4345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	69	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGTTACTCCCACTATCT	NA	False	NA	NA	False	NA	NA	NA	35550974	35552926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_35551000_35552900
71822	chr7	-	818	9	NNC	ENSMUSG00000063511.12	novel	1735	10	NA	NA	10	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	493.883067511936	266	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGATAGTGGGCATG	9101	False	NA	NA	False	NA	NA	NA	45045106	45025893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45025957_45030146_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
71824	chr4	+	529	1	ISM	ENSMUSG00000042388.15	ENSMUST00000046659.14	3884	12	67176	114	33074	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCACATCTGGGG	4115	False	NA	NA	False	NA	NA	NA	127130172	127130701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_127130200_127130700
71826	chr12	-	484	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	45	-3	-25	0	multi-exon	FALSE	canonical	3	5332	junction_1	0	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCTTGTGTTTTGATT	NA	False	NA	NA	False	NA	NA	NA	69230812	69229511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69229940_69230756
71827	chr7	+	1441	4	Antisense	novelGene_ENSMUSG00000074272.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGCTAAGCCAGGCTGC	NA	False	NA	NA	False	NA	NA	NA	25170804	25176995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_25171501_25173946_25174232_25175768_25176129_25176895
71828	chr7	+	507	1	ISM	ENSMUSG00000066406.17	ENSMUST00000207750.2	12597	38	298569	0	52106	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCGTGATGTATTTG	NA	False	NA	NA	False	NA	NA	NA	75403850	75404357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_75403800_75404400
71829	chr16	+	659	1	Intergenic	novelGene_3616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20509456	20510115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_20509500_20510100
71832	chr4	-	281	1	ISM	ENSMUSG00000008305.19	ENSMUST00000107337.8	2067	7	42991	11	-16558	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAAACTGCCTGGGGCCTG	NA	False	NA	NA	False	NA	NA	NA	72076108	72075827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_72075800_72076100
71833	chr11	+	786	1	NIC	ENSMUSG00000017837.13	novel	2097	4	NA	NA	-6	-1088	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAGCCTGGTGTGCATA	NA	False	NA	NA	False	NA	NA	NA	100513830	100514616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_100513800_100514600
71834	chr3	-	1286	1	Intergenic	novelGene_3132	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAAGCTCAGGCGCTGT	NA	False	NA	NA	False	NA	NA	NA	67380665	67379379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_67379400_67380700
71837	chr8	+	952	6	NNC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	-3	43	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	224.438855816011	10	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAACTAGTTAAACTGA	NA	False	NA	NA	False	NA	NA	NA	80438476	80502014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80459409_80459442_80501560
71838	chr19	-	1559	10	Antisense	novelGene_ENSMUSG00000064105.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	56	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGAAGCATGGCAGCGTC	2178	False	NA	NA	False	NA	NA	NA	46866804	46808031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46808060_46808185_46808320_46842337_46842484_46845274_46845415_46845605_46845670_46847379_46847550_46856974_46857055_46860081_46860159_46865644_46865830_46866269
71839	chr7	-	772	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-7	-7	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	162.288138814887	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTCATGAACTTGTCTTG	1599	False	NA	NA	False	NA	NA	NA	139682226	139679393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
71840	chr8	-	1209	1	Intergenic	novelGene_1730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTACCTCTGGTGGG	NA	False	NA	NA	False	NA	NA	NA	110175895	110174686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_110174700_110175900
71841	chr14	+	443	1	Intergenic	novelGene_601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACTGAGAGGTACTTAAA	NA	False	NA	NA	False	NA	NA	NA	69970283	69970726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_69970300_69970700
71843	chr11	+	897	1	ISM	ENSMUSG00000049807.17	ENSMUST00000121799.8	5816	24	85969	4	10358	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCAGTGTCTCGCTTGT	NA	False	NA	NA	False	NA	NA	NA	97392327	97393224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97392300_97393200
71845	chr4	+	1213	5	NIC	ENSMUSG00000028865.15	novel	986	6	NA	NA	131	-17	intron_retention	FALSE	canonical	3	38	junction_4	6.80073525436772	27	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTCCACCCCATGATTC	NA	False	NA	NA	False	NA	NA	NA	132948251	132951849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
71846	chr11	+	819	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	287	junction_1	154.183786436836	1862	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	4654641	4687669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4654713_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
71847	chr19	-	794	2	FSM	ENSMUSG00000042694.18	ENSMUST00000182714.2	690	2	-52	-52	-4	52	multi-exon	FALSE	canonical	3	136	junction_1	0	100	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCTTAAGGTATTCCA	NA	False	NA	NA	False	NA	NA	NA	47525537	47524301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_47524811_47525252
71848	chr5	-	1377	6	ISM	ENSMUSG00000029370.11	ENSMUST00000202807.2	959	7	860	-537	860	-10	3prime_fragment	FALSE	canonical	0	0	junction_2	1.78885438199983	6	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAACTCTGATTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	90756800	90750944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_90751808_90751901_90752000_90752104_90752224_90754273_90754326_90754634_90754737_90756657
71851	chr9	-	1711	2	Antisense	novelGene_ENSMUSG00000032193.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	82	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTGGCTTCCAGCACACT	NA	False	NA	NA	False	NA	NA	NA	21653782	21651702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21652116_21652484
71852	chr17	+	546	2	Intergenic	novelGene_247	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATGGCTTGGTTCTCAA	NA	False	NA	NA	False	NA	NA	NA	45884418	45891438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_45884574_45891047
71853	chr7	-	566	6	FSM	ENSMUSG00000025466.20	ENSMUST00000142105.8	536	6	-30	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	173.251262621662	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1506	False	NA	NA	False	NA	NA	NA	139682319	139679382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139679536_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
71854	chr16	-	2784	1	Genic_Genomic	ENSMUSG00000087605.2	novel	NA	NA	NA	NA	-818	-2160	mono-exon	FALSE	NA	NA	NA	NA	NA	2	92	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTACCCAAGCAGAAATG	NA	False	NA	NA	False	NA	NA	NA	30793154	30790370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_30790400_30793200
71855	chr12	+	465	1	ISM	ENSMUSG00000040856.18	ENSMUST00000056110.15	4653	6	7299	2724	305	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTCTAAATGAGTTAAAG	NA	False	NA	NA	False	NA	NA	NA	109426073	109426538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_109426100_109426500
71856	chr6	-	966	2	ISM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	5375	18	429	-18	3prime_fragment	FALSE	canonical	3	1666	junction_1	0	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCTATAAAGGGAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	39782547	39778755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_39779479_39782304
71857	chr12	+	437	4	NNC	ENSMUSG00000056899.11	novel	347	4	NA	NA	274	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	115.259128344208	5	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAACTCAGTAACTTACT	NA	False	NA	NA	False	NA	NA	NA	41074601	41160944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_41074633_41110404_41110568_41118308_41118446_41160838
71859	chr4	-	1552	14	ISM	ENSMUSG00000028649.22	ENSMUST00000238731.2	17268	94	10376	160133	-9487	1957	internal_fragment	FALSE	canonical	3	22	junction_11	10.7977643971487	12	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATCTCATCCTCTGAA	NA	False	NA	NA	False	NA	NA	NA	123448111	123403641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_123403842_123404437_123404593_123404738_123404833_123404910_123405039_123405598_123405695_123405839_123405960_123406554_123406662_123406762_123406876_123407627_123407795_123429994_123430088_123433588_123433667_123436284_123436381_123438534_123438625_123448096
71860	chrX	-	526	2	Genic_Genomic	ENSMUSG00000078208.2	novel	842	1	NA	NA	-13	-23	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGTTTGCAGCAAAATT	NA	False	NA	NA	False	NA	NA	NA	8829227	8828395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_8828832_8829137
71864	chr11	-	512	2	ISM	ENSMUSG00000078640.10	ENSMUST00000139829.2	796	4	2258	-39	2102	-7	3prime_fragment	FALSE	canonical	3	8	junction_1	0	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGCTAAATTTGCTTCTT	8740	False	NA	NA	False	NA	NA	NA	102467843	102467230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102467624_102467724
71866	chr19	-	940	2	FSM	ENSMUSG00000024939.7	ENSMUST00000099955.4	1197	2	249	8	231	-8	multi-exon	FALSE	canonical	3	87	junction_1	0	48	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGTATTGTGATTGCCT	NA	False	NA	NA	False	NA	NA	NA	5779430	5778122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5778897_5779264
71868	chr11	-	430	5	Antisense	novelGene_ENSMUSG00000038437.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGGTGGGGGAAGGAGAC	NA	False	NA	NA	False	NA	NA	NA	97557980	97555779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_97555860_97556310_97556365_97556553_97556664_97557613_97557717_97557897
71870	chr12	-	1193	1	Intergenic	novelGene_4286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTCTAATATTGCAAAAGA	NA	False	NA	NA	False	NA	NA	NA	3584596	3583403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_3583400_3584600
71873	chr7	-	549	2	Genic_Genomic	ENSMUSG00000099647.2	novel	321	1	NA	NA	-46	245	multi-exon	FALSE	canonical	3	74	junction_1	0	14	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54062272	54061660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_54062012_54062074
71875	chr5	-	790	4	NIC	ENSMUSG00000001082.13	novel	630	5	NA	NA	15	0	intron_retention	FALSE	canonical	3	375	junction_3	37.6769897358528	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCTTTCCGTCTTACTA	NA	False	NA	NA	False	NA	NA	NA	34792056	34790991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791685_34791766_34791858_34791934
71876	chr11	-	1022	1	Intergenic	novelGene_2397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTAGGTGCTGAACAGAG	8482	False	NA	NA	False	NA	NA	NA	69583605	69582583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_69582600_69583600
71878	chr10	-	1230	6	NNC	ENSMUSG00000039914.7	novel	1434	5	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	51.1092946537124	3	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	6976	False	NA	NA	False	NA	NA	NA	128204829	128198968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204605_128204659_128204786
71879	chr7	-	830	5	FSM	ENSMUSG00000030792.9	ENSMUST00000033057.9	1149	5	298	21	-2	-15	multi-exon	FALSE	canonical	3	39	junction_1	6.17960354715414	200	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTTACATCTAGCTCA	8599	False	NA	NA	False	NA	NA	NA	44861249	44856963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44857323_44859536_44859627_44859754_44859896_44860824_44860995_44861179
71880	chr7	+	694	6	Antisense	novelGene_ENSMUSG00000006315.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGGTCCCGCAAATGCGG	0	True	NA	NA	False	NA	NA	NA	30427127	30428855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_30427331_30427412_30427537_30427632_30427715_30427856_30427996_30428082_30428142_30428768
71881	chr4	-	680	1	ISM	ENSMUSG00000028917.15	ENSMUST00000084203.11	4136	20	37702	3	3120	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTTGTCGCTGACCCT	NA	False	NA	NA	False	NA	NA	NA	141353727	141353047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141353000_141353700
71882	chr7	+	1098	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	44	0	44	0	multi-exon	FALSE	canonical	3	22	junction_1	0	168	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCACTGTGTGTTCAGTC	2984	False	NA	NA	False	NA	NA	NA	5018512	5021486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_5018560_5020435
71883	chr8	-	1175	2	FSM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	28	9	28	-9	multi-exon	FALSE	canonical	3	15	junction_1	0	38	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAAGCAGATTGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	4309246	4307668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_4308648_4309050
71884	chr17	-	403	3	Antisense	novelGene_ENSMUSG00000040828.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	1	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAAGTATAGTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	56971346	56967236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56967284_56968073_56968167_56971083
71885	chr16	-	1088	1	Intergenic	novelGene_3641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCCAAAACTTCTTTATG	NA	False	NA	NA	False	NA	NA	NA	32366172	32365084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_32365100_32366200
71886	chr1	-	1891	13	FSM	ENSMUSG00000072295.8	ENSMUST00000097080.4	2131	13	9	231	2	-231	multi-exon	FALSE	canonical	1	1	junction_7	3.19722101554181	13	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTCTAAGTAGAAACGT	NA	False	NA	NA	False	NA	NA	NA	59134050	59089895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_59090445_59091654_59091693_59097814_59097879_59099730_59099837_59101554_59101690_59105308_59105389_59106935_59107005_59107841_59107887_59108875_59109002_59114155_59114302_59115829_59115882_59117041_59117129_59133656
71887	chr3	-	755	2	NIC	ENSMUSG00000028099.9	novel	923	3	NA	NA	0	-2	intron_retention	FALSE	canonical	3	17	junction_1	0	16	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCCTTGGTGTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	96634791	96630740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_96631369_96634664
71889	chr14	+	1941	4	NNC	ENSMUSG00000022102.14	novel	247	2	NA	NA	-51	24789	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.55902608401044	5	50	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACAGCGATGATCTTTTA	NA	False	NA	NA	False	NA	NA	NA	71010660	71040724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_71010805_71013423_71013512_71014255_71014438_71039197
71890	chrX	-	1242	6	NIC	ENSMUSG00000031389.18	novel	2690	19	NA	NA	13	1992	intron_retention	FALSE	canonical	3	29	junction_3	6.24819974072532	15	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCAGATGCAGGGCTTAG	NA	False	NA	NA	False	NA	NA	NA	72954864	72947998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72948076_72948185_72948315_72949256_72949826_72950034_72950198_72950274_72950483_72954768
71892	chr2	-	1110	1	Antisense	novelGene_ENSMUSG00000026914.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	61630339	61629229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_61629200_61630300
71893	chr6	+	582	3	NNC	ENSMUSG00000004285.13	novel	703	2	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	962	83	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	-5	True	NA	NA	False	NA	NA	NA	29467743	29470511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_29467974_29470065_29470184_29470277
71894	chr18	+	1614	11	FSM	ENSMUSG00000038128.8	ENSMUST00000042868.6	2717	11	166	937	166	-937	multi-exon	FALSE	canonical	0	0	junction_5	3.0347981810987	9	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACCCTAATGTCAGTGCA	4949	False	NA	NA	False	NA	NA	NA	33072376	33318386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_33072598_33211045_33211125_33240932_33240996_33242817_33242901_33262813_33262887_33289801_33289893_33291879_33291955_33309211_33309288_33312550_33312678_33315290_33315444_33317813
71895	chr2	+	2387	1	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	153062	32	20170	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	11	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTGGACAATAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	49662371	49664758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_49662400_49664800
71896	chr5	+	532	1	Intergenic	novelGene_660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTTGTGCAACTTTGT	NA	False	NA	NA	False	NA	NA	NA	16637545	16638077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_16637500_16638100
71898	chr2	-	694	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8801	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	256.084336693988	1060	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGGAAAGTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	10370051	10344101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10351924_10352011_10369968
71899	chr13	+	771	6	NNC	ENSMUSG00000078941.10	novel	1298	5	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	573.521403262337	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGATACACATCTCTTTA	NA	False	NA	NA	False	NA	NA	NA	100787869	100802861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800705_100802334_100802535_100802672
71900	chr10	-	727	5	FSM	ENSMUSG00000051736.9	ENSMUST00000063204.9	745	5	18	0	12	0	multi-exon	FALSE	canonical	3	17	junction_3	5.93190525885234	152	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGACTCTTCCATTTTA	NA	False	NA	NA	False	NA	NA	NA	39009884	38994799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_38995031_38996253_38996393_38998172_38998332_39008242_39008375_39009818
71902	chr1	+	1549	4	ISM	ENSMUSG00000036500.5	ENSMUST00000044878.4	1680	11	1802	-807	1802	807	3prime_fragment	FALSE	canonical	0	0	junction_1	0.942809041582063	3	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATACAATAGCAATAGTC	NA	False	NA	NA	False	NA	NA	NA	87054531	87056441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87054585_87054657_87054850_87055051_87055166_87055251
71903	SIRV5	+	534	2	ISM	SIRV5A	SIRV503	526	3	-1	135	-1	16	5prime_fragment	FALSE	canonical	3	11825	junction_1	0	6768	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGCAAGACCTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	8200	11007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV5_+_8586_10858
71904	chrX	+	738	1	Genic_Genomic	ENSMUSG00000031154.16	novel	NA	NA	NA	NA	4	97	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTGCCGCCATGACTATT	NA	False	NA	NA	False	NA	NA	NA	7707606	7708344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_7707600_7708300
71905	chr8	-	1458	3	Intergenic	novelGene_1731	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	1	10	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTAAGAGCTGGATCCTG	NA	False	NA	NA	False	NA	NA	NA	110185380	110182264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_110182606_110183802_110183912_110184372
71906	chrX	+	992	3	NNC	ENSMUSG00000079428.9	novel	453	4	NA	NA	-2827	-6	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	4	28	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTTTAAGACTTGATC	NA	False	NA	NA	False	NA	NA	NA	135121962	135126843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_135122041_135125650_135125722_135126000
71907	chr16	+	911	5	NNC	ENSMUSG00000116641.2	novel	1200	5	NA	NA	22168	-3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	5.44862367942584	111	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATTGAACCATTATTT	NA	False	NA	NA	False	NA	NA	NA	94544920	94554294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_94545201_94549749_94549952_94553485_94553564_94553805_94553999_94554136
71909	chr10	-	1007	6	NNC	ENSMUSG00000033318.8	novel	2254	6	NA	NA	-696	-4	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	16.6805275695944	152	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTCCTTTTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	75671411	75667682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008_75670242_75671296
71910	chr11	-	561	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	-42	0	-42	0	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	27	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	NA	False	NA	NA	NA	6394394	6378137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
71911	chr4	-	1069	1	Antisense	novelGene_ENSMUSG00000028392.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCCACACCCACTTTATA	NA	False	NA	NA	False	NA	NA	NA	62415532	62414463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_62414500_62415500
71912	chr11	+	935	5	NNC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	-88	4370	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	6.48074069840786	59	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTTCACATGTCCTTTT	8726	False	NA	NA	False	NA	NA	NA	96142381	96160064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96142640_96152437_96152590_96154999_96155212_96155549_96155672_96159873
71913	chr9	+	1584	1	NIC	ENSMUSG00000032348.7	novel	743	6	NA	NA	87	-12338	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGCTCGAGCTTGAATA	NA	False	NA	NA	False	NA	NA	NA	78099315	78100899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_78099300_78100900
71915	chr1	-	692	5	FSM	ENSMUSG00000026279.15	ENSMUST00000189728.7	713	5	18	3	18	0	multi-exon	FALSE	canonical	3	11	junction_4	175.089262948931	117	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGTGTAGACTGTACAT	NA	False	NA	NA	False	NA	NA	NA	93659630	93633111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93659578
71917	chr6	+	970	2	ISM	ENSMUSG00000029923.5	ENSMUST00000031986.5	1575	4	6884	7	6884	-7	3prime_fragment	FALSE	canonical	2	3	junction_1	0	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAACCAGTGTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	39364992	39367307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_39365127_39366471
71918	chr1	-	653	1	NIC	ENSMUSG00000073538.11	novel	766	4	NA	NA	10	-7324	mono-exon	FALSE	NA	NA	NA	NA	NA	54	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAATAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	153289969	153289316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_153289300_153290000
71920	chr4	-	1525	1	ISM	ENSMUSG00000028351.6	ENSMUST00000030036.6	3212	8	191338	21	66299	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATATTTCTTCGGTTA	NA	False	NA	NA	False	NA	NA	NA	68681296	68679771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_68679800_68681300
71921	chr19	-	726	1	Intergenic	novelGene_1211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCACTCTGTCTCGGTGT	NA	False	NA	NA	False	NA	NA	NA	15932303	15931577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_15931600_15932300
71922	chr9	+	1673	11	ISM	ENSMUSG00000053641.10	ENSMUST00000038890.6	8645	34	24615	51871	24411	7775	internal_fragment	FALSE	canonical	3	12	junction_10	4.97594212184989	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCCAAAGAAGCCATGTAAA	6877	False	NA	NA	False	NA	NA	NA	64743236	64775078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64743364_64746094_64746427_64749721_64749972_64756407_64756478_64758493_64758664_64759697_64759940_64764948_64765016_64766580_64766640_64769184_64769330_64769608_64769785_64775043
71923	chr14	+	1653	4	FSM	ENSMUSG00000095975.4	ENSMUST00000184016.3	1649	4	8	-12	8	12	multi-exon	FALSE	canonical	1	2	junction_1	2.94392028877595	22	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAATACCTGTATGTAGA	NA	False	NA	NA	False	NA	NA	NA	25942970	25956792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_25943025_25952339_25952543_25955303_25955421_25955513
71924	chr19	+	1677	3	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	2	-26003	intron_retention	FALSE	canonical	3	27	junction_2	9	1	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGAATTTCTACTTCATT	NA	False	NA	NA	False	NA	NA	NA	58500454	58515457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_58500868_58501047_58501134_58514279
71925	chr17	+	1449	1	Antisense	novelGene_ENSMUSG00000048915.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAAGCTCCCGACACCC	NA	False	NA	NA	False	NA	NA	NA	62911245	62912694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_62911200_62912700
71928	chr14	-	1220	6	NNC	ENSMUSG00000035121.7	novel	1037	6	NA	NA	1716	-50	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0.979795897113271	6	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAGCAAATGAAAATAAAAC	8817	False	NA	NA	False	NA	NA	NA	63429258	63419941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63420184_63420869_63421014_63423486_63423684_63425889_63426231_63426556_63426748_63429153
71930	chr13	-	1451	5	ISM	ENSMUSG00000021536.8	ENSMUST00000022013.8	4211	25	356803	9	356803	-9	3prime_fragment	FALSE	canonical	2	3	junction_3	1.4142135623731	8	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGCCCGAATCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	68790857	68768170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_68768992_68773906_68774032_68779028_68779144_68788828_68788937_68790575
71931	chr4	-	1463	7	Intergenic	novelGene_1990	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGGCTGGATTTGAGGC	7760	False	NA	NA	False	NA	NA	NA	137873640	137824093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_137824241_137824553_137824670_137830624_137830722_137832623_137832743_137847651_137847764_137853118_137853943_137873592
71935	chr13	-	2192	1	Intergenic	novelGene_1532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTCTCTCACCTGTACT	NA	False	NA	NA	False	NA	NA	NA	108180851	108178659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_108178700_108180900
71936	chr7	+	846	1	NIC	ENSMUSG00000051451.7	novel	1269	4	NA	NA	2150	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	13	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAATAAAGTCCTTAACTA	NA	False	NA	NA	False	NA	NA	NA	90096060	90096906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_90096100_90096900
71937	chr12	-	945	2	Genic_Genomic	ENSMUSG00000060499.8	novel	1023	1	NA	NA	-5	-19	multi-exon	FALSE	canonical	0	0	junction_1	0	7	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGAAAATTACATCTCAAC	NA	False	NA	NA	False	NA	NA	NA	66331180	66330171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_66330934_66330997
71938	chr5	-	707	5	FSM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	25	8	25	-4	multi-exon	FALSE	canonical	3	69	junction_4	104.169033306449	1270	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGCCTGCCTGCTCATTC	NA	False	NA	NA	False	NA	NA	NA	137015730	137011051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137015664
71939	chr9	-	941	1	NIC	ENSMUSG00000043923.9	novel	1725	11	NA	NA	61	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCGGCTGCCTTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	44322466	44321525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44321500_44322500
71941	chr2	+	1394	7	NNC	ENSMUSG00000061689.16	novel	1595	7	NA	NA	0	4	intron_retention	TRUE	non_canonical	0	0	junction_2	165.100979201619	1	65	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGAAGGAGAAAGCACTCAA	NA	False	NA	NA	False	NA	NA	NA	156562979	156604827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156563008_156587754_156588117_156590210_156590341_156590869_156591277_156602770_156602863_156603692_156603849_156604608
71942	chr5	-	1438	10	FSM	ENSMUSG00000061259.12	ENSMUST00000031175.12	2716	10	31	1247	31	-1247	multi-exon	TRUE	canonical	0	0	junction_6	1.47405546238018	8	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTGTCGGTACAGATT	NA	False	NA	NA	False	NA	NA	NA	86521248	86451322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_86451632_86454125_86454269_86457122_86457383_86474266_86474445_86475476_86475516_86478929_86479085_86485085_86485154_86486639_86486759_86487338_86487461_86521203
71943	chr8	-	1975	3	NNC	ENSMUSG00000110231.2	novel	936	3	NA	NA	-22	2177	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	10	6	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGCTTGAATAAAGAGAC	NA	False	NA	NA	False	NA	NA	NA	45618278	45611353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_45612932_45614492_45614559_45617947
71944	chr11	+	1047	1	Intergenic	novelGene_2470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATAATTTTTGTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	97079111	97080158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_97079100_97080200
71946	chr7	-	745	1	Antisense	novelGene_ENSMUSG00000087178.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGAGAATTACTCTTGG	NA	False	NA	NA	False	NA	NA	NA	55626901	55626156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_55626200_55626900
71947	chr3	+	1276	1	Intergenic	novelGene_3128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATGGCCATATTTCCTG	NA	False	NA	NA	False	NA	NA	NA	63155836	63157112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_63155800_63157100
71948	chr19	-	1470	10	ISM	ENSMUSG00000044948.18	ENSMUST00000160247.3	5968	38	1473	58745	1452	-751	internal_fragment	FALSE	canonical	0	0	junction_3	1.5475986974649	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCATCATCTGCACTAGC	NA	False	NA	NA	False	NA	NA	NA	47824348	47784040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_47784191_47785547_47785629_47790301_47790419_47800506_47800639_47802366_47802435_47804251_47804412_47811467_47811619_47814200_47814369_47818822_47818920_47824002
71949	chr7	+	577	7	FSM	ENSMUSG00000060791.16	ENSMUST00000078845.13	637	7	50	10	50	-10	multi-exon	FALSE	canonical	3	32	junction_1	149.1011029097	270	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAGGAACTTAATAACGA	196	False	NA	NA	False	NA	NA	NA	28140401	28145954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28140467_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
71951	chr10	-	747	4	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1014	970	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	12.4721912892465	16	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCTGGTCTACAAATAAAG	8445	False	NA	NA	False	NA	NA	NA	84390216	84382310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_84382387_84383922_84384062_84385083_84385495_84390095
71952	chr11	-	2742	10	ISM	ENSMUSG00000044072.15	ENSMUST00000123881.9	2432	14	9364	-1086	-3404	0	3prime_fragment	FALSE	canonical	0	0	junction_4	1.47405546238018	3	47	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCTTTGTTCTTAAGC	NA	False	NA	NA	False	NA	NA	NA	29704869	29693047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_29694611_29696247_29696349_29696757_29696912_29697429_29697534_29699258_29699422_29699804_29699978_29701188_29701378_29702435_29702551_29703063_29703222_29704847
71953	chr10	-	711	8	Antisense	novelGene_ENSMUSG00000087819.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGAGGAGCAGGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	111332725	111309134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_111309212_111317139_111317178_111321359_111321439_111322498_111322605_111330000_111330154_111331155_111331235_111331898_111331967_111332614
71954	chr2	-	2691	1	Antisense	novelGene_ENSMUSG00000086196.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGTTCTTGCCCAACCT	NA	False	NA	NA	False	NA	NA	NA	60194396	60191705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_60191700_60194400
71955	chr8	+	1016	2	Genic_Genomic	ENSMUSG00000099881.2	novel	2137	1	NA	NA	123	-13	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTAAAAATACTCATGT	NA	False	NA	NA	False	NA	NA	NA	123769327	123771328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_123770269_123771253
71957	chr12	-	746	4	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	6	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.591040608705	117	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3384	False	NA	NA	False	NA	NA	NA	110855544	110844025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110844428_110846118_110846249_110850323_110850493_110855499
71958	chr16	+	855	3	NNC	ENSMUSG00000116747.2	novel	624	3	NA	NA	58648	775	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCTAAGCAAGACCAATAA	NA	False	NA	NA	False	NA	NA	NA	91981823	91984191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91981879_91983347_91983620_91983663
71959	chr10	+	1724	1	FSM	ENSMUSG00000112301.2	ENSMUST00000218348.2	729	1	42	-1037	42	1037	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCTCCCCAACTTGCTT	NA	False	NA	NA	False	NA	NA	NA	115151592	115153316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_115151600_115153300
71960	chr13	-	3346	1	Intergenic	novelGene_1385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	121	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTTCCACTTCCTCCT	9639	False	NA	NA	False	NA	NA	NA	56242539	56239193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_56239200_56242500
71962	chr1	-	1249	10	NNC	ENSMUSG00000056536.15	novel	1362	10	NA	NA	3	-74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	32.4756318901829	1	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGTACAAACATTTTTT	NA	False	NA	NA	False	NA	NA	NA	105591365	105574427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_105574540_105575835_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586640_105586732_105587017_105587092_105591224
71963	chr16	-	978	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	38	-37	38	3	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	439	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTTCCTGTGGATTC	8748	False	NA	NA	False	NA	NA	NA	31133374	31115936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
71966	chr10	+	1082	3	ISM	ENSMUSG00000019848.15	ENSMUST00000019994.14	1853	4	25746	10	25649	-10	3prime_fragment	FALSE	canonical	3	31	junction_2	1	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGCCAATTTGAAGATG	NA	False	NA	NA	False	NA	NA	NA	45191146	45194538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_45191376_45192526_45192636_45193794
71968	chr6	+	923	5	ISM	ENSMUSG00000001761.8	ENSMUST00000001812.5	3779	12	529	5989	529	-5989	5prime_fragment	FALSE	canonical	3	65	junction_3	8.87059749960509	1	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTGTGGCTCAGGTA	84	False	NA	NA	False	NA	NA	NA	29736221	29755375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_29736353_29753468_29753675_29754320_29754531_29754690_29754864_29755172
71970	chr7	+	1401	8	ISM	ENSMUSG00000078787.10	ENSMUST00000108385.3	1631	9	557	2	557	-2	3prime_fragment	FALSE	canonical	1	2	junction_2	1.91662969499982	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTAAACTTTTATTTCTT	NA	False	NA	NA	False	NA	NA	NA	26855063	26858091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_26855221_26855581_26855732_26855940_26856102_26856642_26856820_26856895_26857038_26857138_26857327_26857576_26857719_26857807
71971	chr18	-	1551	1	ISM	ENSMUSG00000041789.8	ENSMUST00000067450.3	2101	3	3044	47	3044	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	8	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAGAAATGTTACTTGA	NA	False	NA	NA	False	NA	NA	NA	62886342	62884791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_62884800_62886300
71972	chr6	-	1551	6	NNC	ENSMUSG00000030283.8	novel	8991	5	NA	NA	-17573	-48	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5.8309518948453	17	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTCCTGCTGATTATTGT	NA	False	NA	NA	False	NA	NA	NA	142927751	142774005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142927390_142927518_142927666
71973	chr6	+	1863	1	FSM	ENSMUSG00002076237.1	ENSMUST00020182045.1	466	1	-1365	-32	-1365	32	mono-exon	FALSE	NA	NA	NA	NA	NA	18	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGTCTGAAATGACACAAG	NA	False	NA	NA	False	NA	NA	NA	83679134	83680997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83679100_83681000
71974	chrY	+	1315	6	Intergenic	novelGene_4716	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	53	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGCAGATGTGTGTGT	7818	False	NA	NA	False	NA	NA	NA	90749189	90833668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_90749208_90824958_90825265_90826076_90826412_90831121_90831171_90832211_90832525_90833374
71975	chr17	+	955	3	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-77	-1353	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	47.5	15	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTAAGGTT	4355	False	NA	NA	False	NA	NA	NA	35827919	35830074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35828009_35829113_35829181_35829275
71976	chr7	-	961	5	NNC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	-4	-152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.248772096237	6	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAAGAACACATTG	NA	False	NA	NA	False	NA	NA	NA	105401428	105395277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_105395929_105399490_105399538_105400796_105400937_105401188_105401261_105401377
71977	chr7	-	617	8	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6001.12606099889	3	29	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCCTGCCTGGCCTGCC	NA	False	NA	NA	False	NA	NA	NA	44778159	44775348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775457_44775538_44775614_44775890_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
71980	chr17	-	1825	3	ISM	ENSMUSG00000023991.17	ENSMUST00000113263.8	3156	17	48403	5703	2956	4818	intron_retention	FALSE	canonical	3	128	junction_1	17.5	3	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTCCTGTGCCAACCT	NA	False	NA	NA	False	NA	NA	NA	48186922	48184391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_48185662_48186279_48186357_48186444
71981	chr11	+	900	5	FSM	ENSMUSG00000018012.12	ENSMUST00000134322.2	717	5	221	-404	221	0	multi-exon	FALSE	canonical	3	54	junction_2	3.80788655293195	52	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCGCTGTCTGCCC	4563	False	NA	NA	False	NA	NA	NA	120613060	120614795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
71982	chr17	+	980	7	NIC	ENSMUSG00000071037.7	novel	1595	11	NA	NA	299488	-12	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	25.6168347424545	1	49	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGATATCTCAATTAATTG	7749	False	NA	NA	False	NA	NA	NA	85698998	85766004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_85699062_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
71984	chr11	+	379	3	NNC	ENSMUSG00000020267.7	novel	636	3	NA	NA	-35	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2403	48	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTATGAGTGGATTTGT	NA	False	NA	NA	False	NA	NA	NA	54757271	54761317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_54757427_54760673_54760777_54761196
71985	chr11	-	977	1	ISM	ENSMUSG00000020883.19	ENSMUST00000103143.10	8601	15	59919	6161	10370	2374	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTAATCTAACTTTTA	8196	False	NA	NA	False	NA	NA	NA	97980519	97979542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97979500_97980500
71986	chr4	+	718	2	FSM	ENSMUSG00000038007.15	ENSMUST00000135874.2	2943	2	23	2202	23	129	multi-exon	FALSE	canonical	3	467	junction_1	0	3414	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTGGTGTGGTTCAAGA	4143	False	NA	NA	False	NA	NA	NA	86848950	86850857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_86849080_86850268
71987	chr15	-	969	8	Antisense	novelGene_ENSMUSG00000058357.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGGCGGACACCAGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	80850340	80832728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_80832844_80836394_80836601_80839819_80839915_80844599_80844796_80846891_80846984_80847858_80847934_80848086_80848228_80850291
71988	chr19	-	482	5	NNC	ENSMUSG00000071528.5	novel	425	5	NA	NA	-32	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2533.27548590752	1707	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAAGCTGGTTGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	47079118	47071908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_47072009_47073211_47073298_47074393_47074487_47074572_47074669_47079011
71989	chr18	+	1520	8	NNC	ENSMUSG00000024425.5	novel	1796	8	NA	NA	34	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	240.630634044829	175	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGTAGCACCTTTTAC	9178	False	NA	NA	False	NA	NA	NA	38552070	38598226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_38552140_38576020_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
71990	chrX	-	948	8	FSM	ENSMUSG00000073177.9	ENSMUST00000101561.8	951	8	-1	4	-1	-4	multi-exon	FALSE	canonical	3	17	junction_1	4.42165358301205	106	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAGTGATTTTTTGCAAT	NA	False	NA	NA	False	NA	NA	NA	55258242	55235190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55246943_55246979_55247366_55247437_55248032_55248151_55258173
71991	chr8	-	1625	9	ISM	ENSMUSG00000014778.11	ENSMUST00000014922.5	3928	22	15819	3	-568	-3	3prime_fragment	FALSE	canonical	1	1	junction_8	2.36841191518705	7	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATAAGAGCCTTTCTCTTC	471	False	NA	NA	False	NA	NA	NA	106058766	106055797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_106056112_106056200_106056402_106056478_106056642_106056726_106056920_106057018_106057210_106057760_106057923_106058001_106058122_106058273_106058457_106058668
71992	chrX	-	403	1	Intergenic	novelGene_4081	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTTGTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	150257123	150256720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150256700_150257100
71993	chr4	+	2766	8	ISM	ENSMUSG00000035275.15	ENSMUST00000038463.15	4045	12	51530	143	51034	-143	3prime_fragment	FALSE	canonical	3	27	junction_1	8.18410604994429	1	95	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAATGCAAATCAAGTGA	NA	False	NA	NA	False	NA	NA	NA	100977709	101009424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_100977777_100988460_100988544_100990783_100990889_100991051_100991164_100993193_100993451_100994907_100995017_100996291_100996429_101007528
71994	chr6	+	2025	5	Intergenic	novelGene_4171	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGGAGTCGGCTCTGCGA	217	False	NA	NA	False	NA	NA	NA	52745913	53045570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_52747368_52754521_52754692_52789089_52789285_52870983_52871057_53045437
71995	chr11	+	770	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	23	2436	4	-14	multi-exon	FALSE	canonical	3	903	junction_1	470.5	4866	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTGATGAAATAATGGCCA	3923	False	NA	NA	False	NA	NA	NA	120489269	120496588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120489431_120490067_120490195_120496106
71998	chr2	-	844	8	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_3	122.917925163625	10	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	NA	False	NA	NA	NA	26806360	26803394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26803518_26803588_26803671_26803924_26804014_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
71999	chr17	-	820	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	2439	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	20.4618547546404	1	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGACCTATCAAAAACATCC	NA	False	NA	NA	False	NA	NA	NA	69584203	69579917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582861_69583120_69583191_69584054
72000	chrX	+	1590	3	FSM	ENSMUSG00000049929.8	ENSMUST00000060576.8	4238	3	-9	2657	-9	-2657	multi-exon	FALSE	canonical	1	3	junction_1	0	14	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTCCAGCTATCCAAGA	NA	False	NA	NA	False	NA	NA	NA	105964221	105974849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105964596_105967683_105967786_105973735
72002	chr7	-	732	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	19	5	-4	-5	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	896	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGTCTGCAACATTAAAA	1685	False	NA	NA	False	NA	NA	NA	90106397	90099912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
72004	chr1	+	1413	1	Intergenic	novelGene_400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATCCTGGAGCACCTG	1547	False	NA	NA	False	NA	NA	NA	86415495	86416908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_86415500_86416900
72006	chrX	-	1072	2	Antisense	novelGene_ENSMUSG00000031153.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	4	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTATACAGAGAAACCCTG	NA	False	NA	NA	False	NA	NA	NA	7684599	7680212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_7680901_7684215
72008	chr13	-	878	1	Intergenic	novelGene_1539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACCCCAAACCCCCTGC	NA	False	NA	NA	False	NA	NA	NA	111941675	111940797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_111940800_111941700
72009	chr11	+	448	1	Intergenic	novelGene_2205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATACATAAAGTAAGGTT	NA	False	NA	NA	False	NA	NA	NA	5671521	5671969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_5671500_5672000
72010	chr9	+	772	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	26	4	26	-4	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATCTCCGGGCTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	54672057	54680390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
72012	chr6	+	1952	1	Intergenic	novelGene_4129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCATGGCATAGAACAGAAA	NA	False	NA	NA	False	NA	NA	NA	28801612	28803564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_28801600_28803600
72015	chr17	+	499	2	ISM	ENSMUSG00000003206.8	ENSMUST00000003274.8	1154	5	3597	5	3597	-5	3prime_fragment	FALSE	canonical	0	0	junction_1	0	9	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATCGTGGTGTTTTGTT	6417	False	NA	NA	False	NA	NA	NA	56263236	56264017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56263340_56263621
72016	chr6	-	242	4	NNC	ENSMUSG00000057841.6	novel	517	4	NA	NA	3	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7733.0980998706	5	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACAAAACCTGCCGTCGT	NA	False	NA	NA	False	NA	NA	NA	115785705	115782486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_115782495_115784042_115784129_115784762_115784864_115785658
72017	chr4	+	1340	2	FSM	ENSMUSG00000048706.4	ENSMUST00000055922.4	3066	2	394	1332	394	-1332	multi-exon	FALSE	canonical	3	28	junction_1	0	14	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTTCATACCGTGGTT	NA	False	NA	NA	False	NA	NA	NA	80829276	80872533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_80829883_80871799
72019	chr5	+	887	6	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	128.790372310977	284	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGTGAGTAGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	112436628	112463222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_112436679_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
72020	chr13	+	1073	1	ISM	ENSMUSG00000025876.16	ENSMUST00000026994.14	3995	16	55503	32	1234	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATGTAAATAAATTATATAT	NA	False	NA	NA	False	NA	NA	NA	55152726	55153799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55152700_55153800
72021	chr8	+	1764	2	FSM	ENSMUSG00000047264.9	ENSMUST00000061508.8	1999	2	45	190	13	-190	multi-exon	FALSE	canonical	3	37	junction_1	0	5	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCCAAACTGACCCCTG	6361	False	NA	NA	False	NA	NA	NA	3543182	3547018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_3543310_3545381
72022	chr11	-	596	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	265	0	219	0	multi-exon	FALSE	canonical	3	9692	junction_2	172	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	70545205	70542675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
72024	chr14	+	1473	8	ISM	ENSMUSG00000084902.3	ENSMUST00000144914.3	2952	19	-103	49375	-103	-49375	5prime_fragment	FALSE	canonical	1	2	junction_2	2.24971653543195	9	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTCAGTAGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	8555181	8605770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_8555366_8564494_8564692_8570082_8570255_8572801_8572891_8597527_8597623_8601671_8601780_8603579_8603777_8605339
72025	chr19	-	1132	14	FSM	ENSMUSG00000063698.10	ENSMUST00000135808.8	1309	14	164	13	109	-3	multi-exon	FALSE	canonical	3	10	junction_12	6.9961950774782	88	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTTGAAAGAAATCATCAA	NA	False	NA	NA	False	NA	NA	NA	60849753	60827198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60847101_60847177_60848466_60848533_60849736
72026	chr8	+	314	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	1353	0	1353	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTGTCCGCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	71152951	71153265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71153000_71153300
72027	chr9	+	1126	10	ISM	ENSMUSG00000046186.9	ENSMUST00000093812.5	5860	33	326	54497	109	43667	5prime_fragment	FALSE	canonical	0	0	junction_8	1.24721912892465	1	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACTGTAAGTTGGTGTAT	2425	False	NA	NA	False	NA	NA	NA	78523153	78569038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_78523235_78524158_78524332_78541928_78541958_78543730_78543962_78549260_78549387_78561841_78561882_78564726_78564812_78567544_78567642_78568173_78568334_78568934
72031	chr6	-	535	3	NIC	ENSMUSG00000012483.5	novel	670	4	NA	NA	27	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	704.5	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	12	True	NA	NA	False	NA	NA	NA	8259113	8255935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_8256248_8256694_8256804_8258999
72033	chr2	+	606	3	ISM	ENSMUSG00000017737.3	ENSMUST00000017881.3	3175	13	5047	725	-1120	-725	3prime_fragment	FALSE	canonical	2	4	junction_1	0	2	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCAGCTACTTTAGTCA	9153	False	NA	NA	False	NA	NA	NA	164795185	164797045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164795335_164795438_164795543_164796692
72034	chr12	-	1184	1	Antisense	novelGene_ENSMUSG00000037669.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGCATGATGTTTGCCA	NA	False	NA	NA	False	NA	NA	NA	8279719	8278535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_8278500_8279700
72035	chr13	+	737	6	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74229	-23954	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_5	8.05977667184395	10	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTATAAAGGACTCACTAAA	NA	False	NA	NA	False	NA	NA	NA	21120573	21184468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067
72036	chr17	-	832	5	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	13	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	41.1491190671198	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTGCCTGTACTTCTTT	5604	False	NA	NA	False	NA	NA	NA	35055890	35042981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35043301_35043726_35043825_35050988_35051129_35055405_35055543_35055752
72039	chr2	-	1232	1	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGAAGGGCAAGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	29953763	29952531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29952500_29953800
72040	chr12	-	477	3	Intergenic	novelGene_4348	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGGCACGCCCCGCCCTCC	NA	False	NA	NA	False	NA	NA	NA	41118659	41074091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_41074144_41074558_41074632_41118307
72042	chr4	-	832	3	NNC	ENSMUSG00000044303.7	novel	895	3	NA	NA	72	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.5	4	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATTTTTAGCATAGAAAT	NA	False	NA	NA	False	NA	NA	NA	89212818	89192707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_89192960_89194890_89195223_89212570
72044	chr2	+	801	1	NIC	ENSMUSG00000095315.3	novel	2159	4	NA	NA	74	-14707	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTCTTTCCTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	150153424	150154225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_150153400_150154200
72045	chr17	-	1007	3	FSM	ENSMUSG00000045378.6	ENSMUST00000051526.6	1019	3	8	4	8	-1	multi-exon	FALSE	canonical	3	18	junction_2	5	83	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTCCTCTGTGTGTCTC	6221	False	NA	NA	False	NA	NA	NA	29161230	29152961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29153781_29160215_29160344_29161170
72046	chr15	-	1965	1	Intergenic	novelGene_3364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGGCGGGGTTGGAGGCA	NA	False	NA	NA	False	NA	NA	NA	97279462	97277497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97277500_97279500
72048	chr17	-	1136	6	NNC	ENSMUSG00000096549.10	novel	686	4	NA	NA	-40	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	2.0591260281974	27	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTATAAGGCGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	48005701	48000502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_48000800_48000982_48001187_48001498_48001615_48002281_48002390_48003259_48003405_48005435
72049	chr19	-	682	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	-16	-2	-16	-1	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	1557	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAGTGAGTCTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	6957885	6955109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
72050	chr3	+	543	1	ISM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	9265	4	1625	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTCTGACTAATTCTTT	NA	False	NA	-70	True	NA	NA	NA	87822892	87823435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_87822900_87823400
72052	chr12	+	1033	1	Antisense	novelGene_ENSMUSG00000071398.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGGAGACACATAGACAAG	NA	False	NA	NA	False	NA	NA	NA	17054966	17055999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_17055000_17056000
72053	chr14	+	716	6	Intergenic	novelGene_523	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGCACTCTGTGCACAA	NA	False	NA	NA	False	NA	NA	NA	20444287	20451289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_20444470_20444700_20444747_20444979_20445084_20447250_20447341_20450424_20450590_20451160
72054	chr13	-	891	6	FSM	ENSMUSG00000057531.15	ENSMUST00000221393.2	1082	6	195	-4	195	-3	multi-exon	FALSE	canonical	3	444	junction_2	12.3709336753537	86	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTGTGCAGCTGGTGA	NA	False	NA	NA	False	NA	NA	NA	45136278	45075557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216
72057	chr5	+	1951	3	NNC	ENSMUSG00000033209.18	novel	10780	24	NA	NA	-1057	478	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	4.5	12	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATATTTCCTCCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	111026611	111062660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_111026695_111040697_111040977_111061071
72058	chr11	+	1543	1	Intergenic	novelGene_2395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCAGTCTAAAACAACCCA	NA	False	NA	NA	False	NA	NA	NA	69524575	69526118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_69524600_69526100
72062	chr1	+	347	2	Genic_Genomic	ENSMUSG00000058603.11	novel	414	1	NA	NA	-42	47	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	127966263	127966766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_127966440_127966595
72063	chr18	-	1151	7	NIC	ENSMUSG00000063889.17	novel	2662	10	NA	NA	-31	9	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	35.5219024765785	9	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCCGGCAAGAATTATGG	10	True	NA	NA	False	NA	NA	NA	3337620	3267524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3267733_3273421_3273579_3287903_3288093_3295039_3295183_3295321_3295417_3325360_3325479_3337379
72065	chr9	-	633	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	1038	7	364	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	NA	False	NA	NA	NA	88404577	88403109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
72067	chr6	-	1076	5	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-7	1705	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.588283394215	52	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGATGATGATATGTGA	NA	False	NA	NA	False	NA	NA	NA	115014823	115006533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_115007026_115009180_115009274_115011116_115011212_115011911_115012095_115014610
72068	chr17	+	189	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1266	394	1266	-394	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACAAGTGGCGTTCAGCC	NA	False	NA	109	True	NA	NA	NA	40158509	40158698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40158500_40158700
72069	chr7	+	1158	7	ISM	ENSMUSG00000003273.15	ENSMUST00000003360.10	1585	9	1163	73	-10	0	3prime_fragment	FALSE	canonical	3	16	junction_2	3.86221007541882	38	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	45350429	45354033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882_45353038_45353136_45353303_45353912
72070	chr13	+	2889	1	Antisense	novelGene_ENSMUSG00000113689.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	80	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGGCCTTACGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	44433020	44435909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_44433000_44435900
72071	chrM	+	484	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	884	10	884	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACAATATGTGAATATAG	446	False	NA	6	True	NA	NA	NA	11050	11534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11000_11500
72072	chr6	-	1432	12	NNC	ENSMUSG00000052955.6	novel	1511	13	NA	NA	10495	-6	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	2.01235851101624	22	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACAAGTGACCTTTTGA	NA	False	NA	NA	False	NA	NA	NA	53945152	53850269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_53850510_53873408_53873592_53902117_53902292_53903794_53903894_53908891_53909024_53909396_53909520_53924703_53924771_53929514_53929595_53930488_53930548_53931494_53931610_53944740_53944860_53945111
72073	chr18	+	648	5	NIC	ENSMUSG00000042705.10	novel	792	6	NA	NA	0	12	combination_of_known_junctions	FALSE	canonical	3	119	junction_4	646.06733395212	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTTCTGTAAAGGGAC	NA	False	NA	NA	False	NA	NA	NA	47091927	47168886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_47091996_47093482_47093574_47096726_47096838_47123545_47123657_47168619
72075	chr12	-	996	3	Antisense	novelGene_ENSMUSG00000041323.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCAGGCAGGCTGTAGAA	NA	False	NA	NA	False	NA	NA	NA	105735366	105727635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_105727856_105732812_105733010_105734787
72076	chr10	+	257	1	Intergenic	novelGene_3434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTCCTCGTCTTAGCT	NA	False	NA	NA	False	NA	NA	NA	44322377	44322634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_44322400_44322600
72079	chr7	-	1206	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	793	178	793	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	1	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGGTCTCTGATAATGA	3634	False	NA	NA	False	NA	NA	NA	126872434	126871228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126871200_126872400
72080	chr1	+	1759	1	Antisense	novelGene_ENSMUSG00000033364.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGCAAACACGTACGGAC	326	False	NA	NA	False	NA	NA	NA	74543225	74544984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_74543200_74545000
72081	chr4	-	1932	13	NNC	ENSMUSG00000028730.15	novel	3750	22	NA	NA	16176	-21924	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	0.924211375534118	2	28	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGAGGGAGAACGAGATCA	NA	False	NA	NA	False	NA	NA	NA	118461426	118433816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_118433915_118436532_118436692_118438186_118438361_118438995_118439187_118440046_118440141_118441822_118441979_118446172_118446335_118450194_118450369_118452949_118453163_118456153_118456268_118457022_118457189_118457929_118458070_118461335
72082	chr1	+	2128	5	FSM	ENSMUSG00000054545.18	ENSMUST00000014263.6	2265	5	107	30	107	-30	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	6	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACTTATCAATAAATTCA	NA	False	NA	NA	False	NA	NA	NA	88066206	88146689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_88067054_88142765_88142898_88143516_88143605_88143859_88144080_88145848
72083	chr7	-	790	6	NIC	ENSMUSG00000003190.13	novel	1075	7	NA	NA	-8	-5	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	60.7730203297483	122	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGCCCGAAAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	44647011	44640650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44640879_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
72084	chr15	-	773	2	Antisense	novelGene_ENSMUSG00000115103.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGGGTGGCATACACC	NA	False	NA	NA	False	NA	NA	NA	36726422	36725146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_36725297_36725799
72085	chr12	-	467	4	FSM	ENSMUSG00000021290.7	ENSMUST00000222874.2	612	4	146	-1	146	0	multi-exon	TRUE	canonical	3	11	junction_3	1208.36593059479	30	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	NA	False	NA	NA	NA	111933182	111927808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933027
72086	chr3	-	1869	6	NNC	ENSMUSG00000040289.9	novel	2423	5	NA	NA	-20	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.31740662898458	4	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTACTGTGTCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	8732064	8728420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8729676_8729975_8730125_8731004_8731087_8731331_8731416_8731561_8731638_8731841
72087	chr4	+	569	5	NNC	ENSMUSG00000065990.13	novel	1159	4	NA	NA	-1	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	992.591400073565	6	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGACCTAGAGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	155916120	155917526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155916193_155916439_155916528_155916808_155916914_155917129_155917255_155917347
72089	chr12	-	937	4	ISM	ENSMUSG00000021056.9	ENSMUST00000218426.2	1980	9	32108	4	14826	-4	3prime_fragment	FALSE	canonical	3	7	junction_2	10.7806410858642	45	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATTATAGATGGTTTGA	3472	False	NA	NA	False	NA	NA	NA	76261412	76250763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_76251085_76253561_76253769_76259148_76259332_76261186
72090	chr7	+	1574	8	ISM	ENSMUSG00000030447.16	ENSMUST00000173497.8	3849	28	-40	47099	4	684	5prime_fragment	FALSE	canonical	3	513	junction_1	52.0204041600946	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGTTAAGTATTCTTGA	NA	False	NA	NA	False	NA	NA	NA	55491957	55528435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626
72091	chr11	-	743	4	FSM	ENSMUSG00000087165.8	ENSMUST00000152790.8	714	4	-25	-4	-25	4	multi-exon	FALSE	canonical	3	14	junction_3	7.84573486395988	152	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTCAGTGATTAGCA	NA	False	NA	NA	False	NA	NA	NA	57692268	57686320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_57686621_57686851_57687000_57687137_57687224_57692059
72092	chr16	-	1797	1	Intergenic	novelGene_3870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACACATGCAAATGCATG	NA	False	NA	NA	False	NA	NA	NA	93834197	93832400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_93832400_93834200
72093	chr4	-	443	4	NNC	ENSMUSG00000028447.12	novel	344	3	NA	NA	2	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	417.39749240582	215	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTGGCCTGCTGA	-14	True	NA	NA	False	NA	NA	NA	41723168	41714946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41715121_41719873_41719924_41720782_41720868_41723034
72094	chr14	+	1317	1	ISM	ENSMUSG00000021767.20	ENSMUST00000069648.14	7649	17	171353	24	45386	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	1	80	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGAGTTTGGTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	21721205	21722522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_21721200_21722500
72095	chr2	+	3677	11	Antisense	novelGene_ENSMUSG00000051747.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	119	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGGTGTGACGATCTCT	4933	False	NA	NA	False	NA	NA	NA	76544905	76550841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_76545267_76545486_76545796_76545885_76546462_76547094_76547393_76547516_76547817_76547923_76548540_76548638_76548942_76549217_76549516_76550017_76550332_76550429_76550716_76550825
72097	chr15	+	774	4	FSM	ENSMUSG00000038622.9	ENSMUST00000037115.9	1007	4	79	154	79	-154	multi-exon	FALSE	canonical	3	604	junction_2	11.2644968324772	125	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAAATAAAAATTTAAACA	NA	False	NA	NA	False	NA	NA	NA	52575916	52593806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_52576083_52582741_52582901_52584419_52584525_52593462
72098	chr14	-	1000	1	Antisense	novelGene_ENSMUSG00000021843.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTATTCTTTGTATATT	NA	False	NA	NA	False	NA	NA	NA	47973527	47972527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_47972500_47973500
72099	chr11	-	1179	8	FSM	ENSMUSG00000041895.16	ENSMUST00000106689.2	1220	8	41	0	41	0	multi-exon	FALSE	canonical	3	112	junction_2	3.73619909446343	8	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTCGAGCTTCACGGGG	NA	False	NA	NA	False	NA	NA	NA	109502217	109472897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
72102	chr1	-	2117	1	Intergenic	novelGene_496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACATATGCAGCCTAG	NA	False	NA	NA	False	NA	NA	NA	182168402	182166285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_182166300_182168400
72103	chr11	-	848	3	FSM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	-18	10	-18	-10	multi-exon	FALSE	canonical	3	39	junction_1	6	152	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGCACAGCGCCACGTT	8630	False	NA	NA	False	NA	NA	NA	5753751	5751649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_5751840_5752998_5753180_5753274
72106	chr19	-	784	1	ISM	ENSMUSG00000025089.16	ENSMUST00000026076.14	4641	11	218965	46	218033	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATTTTTTTCCAAACCT	NA	False	NA	NA	False	NA	NA	NA	58224865	58224081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_58224100_58224900
72107	chr11	-	1065	5	NNC	ENSMUSG00000020182.17	novel	1954	15	NA	NA	-6403	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	46.0271658914602	161	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATACTAACTGTATTGA	NA	False	NA	NA	False	NA	NA	NA	11779324	11764111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11779084
72108	chr7	-	969	4	FSM	ENSMUSG00000040026.9	ENSMUST00000006956.9	555	4	-415	1	-415	0	multi-exon	FALSE	canonical	1	3	junction_3	7.31816613336672	166	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTCGCTGTCACTGTT	NA	False	NA	NA	False	NA	NA	NA	46365539	46361422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46361689_46362012_46362152_46364433_46364529_46365070
72109	chr10	+	1919	1	Intergenic	novelGene_3421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGAACACAAGGCATCAA	NA	False	NA	NA	False	NA	NA	NA	31209861	31211780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_31209900_31211800
72110	chr7	+	386	5	NNC	ENSMUSG00000074199.8	novel	403	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.7786915081091	4	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCTCCTGAATCTGTGT	NA	False	NA	NA	False	NA	NA	NA	30487329	30490509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30487460_30489128_30489180_30489336_30489382_30489992_30490041_30490397
72111	chr9	-	288	1	FSM	ENSMUSG00002076161.1	ENSMUST00020183253.1	331	1	22	21	22	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	383	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGTCTGCCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	78082893	78082605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78082600_78082900
72112	chr11	+	543	4	FSM	ENSMUSG00000049299.15	ENSMUST00000060956.13	628	4	82	3	0	-3	multi-exon	FALSE	canonical	1	7	junction_3	212.171314429323	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTGCCTGAGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	69214982	69216616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216383
72113	chr10	+	775	1	Intergenic	novelGene_3382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAAGCCGTGTCTCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	4284874	4285649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_4284900_4285600
72114	chr7	-	1573	8	Antisense	novelGene_ENSMUSG00000040734.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACACAGCGAATTCCGAG	NA	False	NA	NA	False	NA	NA	NA	19105479	19094634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_19094658_19094949_19095242_19102483_19102543_19102637_19102783_19103716_19104227_19104310_19104413_19104490_19104579_19105125
72115	chr1	-	1594	2	NNC	ENSMUSG00000073678.5	novel	10583	27	NA	NA	50814	-2564	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATCATGAAAACATGTTCC	NA	False	NA	NA	False	NA	NA	NA	54517791	54514716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_54516254_54517734
72116	chr12	-	1460	1	NIC	ENSMUSG00000019718.9	novel	1831	5	NA	NA	59	-6657	mono-exon	FALSE	NA	NA	NA	NA	NA	95	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAGATTTTTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	72132154	72130694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_72130700_72132200
72118	chr11	-	411	2	Antisense	novelGene_ENSMUSG00000086917.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAGAAAGGAAAATCAGGG	NA	False	NA	NA	False	NA	NA	NA	97794502	97784278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_97784581_97794393
72119	chr19	+	1091	1	ISM	ENSMUSG00000024750.12	ENSMUST00000237651.2	7385	6	13061	411	9299	-411	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAAAAGGGTGAAATTA	NA	False	NA	NA	False	NA	NA	NA	21262702	21263793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_21262700_21263800
72121	chr2	+	2156	1	FSM	ENSMUSG00000103901.2	ENSMUST00000194683.2	3478	1	933	389	933	-389	mono-exon	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGATAAAGGTATAATGGC	NA	False	NA	NA	False	NA	NA	NA	14155563	14157719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_14155600_14157700
72122	chr2	-	2564	8	FSM	ENSMUSG00000027579.7	ENSMUST00000016498.5	2562	8	-4	2	-4	-2	multi-exon	FALSE	canonical	0	0	junction_4	0.880630571852711	2	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTGGTTCCCAGAATGC	NA	False	NA	NA	False	NA	NA	NA	180854982	180847356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_180848174_180848427_180848585_180848665_180848848_180849411_180849571_180849656_180849799_180850467_180850635_180851241_180851364_180854164
72123	chr14	-	982	3	Antisense	novelGene_ENSMUSG00000114243.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1.5	22	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	6120956	6109732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_6110307_6110832_6111143_6120858
72124	chr2	-	252	3	NNC	ENSMUSG00000079502.9	novel	1841	7	NA	NA	29	14880	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1	10	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCACTTCATGCATGTG	NA	False	NA	NA	False	NA	NA	NA	28945007	28927028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_28927036_28927105_28927169_28944825
72125	chr9	+	821	5	ISM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	-30	1396	-30	3	5prime_fragment	FALSE	canonical	3	529	junction_1	46.8634985889871	148	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCATTGAGTTTTAGAA	NA	False	NA	NA	False	NA	NA	NA	26910975	26917230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852
72126	chr16	-	1350	10	ISM	ENSMUSG00000022747.18	ENSMUST00000114357.10	1918	12	16570	336	283	-336	3prime_fragment	FALSE	canonical	1	1	junction_6	1.74977952755818	4	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAAATTATGTGTATTAA	NA	False	NA	NA	False	NA	NA	NA	58327978	58290910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810
72127	chr17	-	1007	6	FSM	ENSMUSG00000073433.12	ENSMUST00000176847.8	736	6	-32	-239	-32	-10	multi-exon	TRUE	canonical	2	4	junction_5	35.4434761274907	42	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCTTGTCTTGCTGCCTG	NA	False	NA	NA	False	NA	NA	NA	26426792	26418170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26426523
72129	chr4	-	322	3	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	0	-987	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	956	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTATGCACTGGCACAGA	-1	True	NA	NA	False	NA	NA	NA	41098183	41094768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41094839_41095144_41095201_41097987
72130	chr17	+	2267	1	Antisense	novelGene_ENSMUSG00000023951.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	91	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAGGGCAGACAGAAAGGG	3976	False	NA	NA	False	NA	NA	NA	46332085	46334352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_46332100_46334400
72131	chr3	+	933	5	ISM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-141	3405	3	-3405	5prime_fragment	FALSE	canonical	3	63	junction_3	5.7227615711298	44	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGAATGGTATAGCTGA	NA	False	NA	NA	False	NA	NA	NA	127347140	127355082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544
72132	chr17	+	1827	1	Intergenic	novelGene_296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAACTAATAAACTACACA	NA	False	NA	NA	False	NA	NA	NA	79202746	79204573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_79202700_79204600
72134	chr13	+	572	1	ISM	ENSMUSG00000021379.3	ENSMUST00000021810.3	3849	3	2679	1548	2679	-1548	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTGAAAATTAAAAGTAGA	NA	False	NA	NA	False	NA	NA	NA	48417382	48417954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_48417400_48418000
72135	chr2	+	878	1	Genic_Genomic	ENSMUSG00000075514.5	novel	NA	NA	NA	NA	418	352	mono-exon	FALSE	NA	NA	NA	NA	NA	36	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTATATTTGTGATTT	4027	False	NA	NA	False	NA	NA	NA	20974282	20975160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_20974300_20975200
72138	chr11	+	419	2	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	327	-280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAATGCCAAATATATCA	183	False	NA	-26	True	NA	NA	NA	75642756	75656391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75642796_75656011
72139	chr12	+	2371	1	Antisense	novelGene_ENSMUSG00000096995.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACCTTTCCGACGGCACC	63	False	NA	NA	False	NA	NA	NA	111538416	111540787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_111538400_111540800
72140	chr16	+	816	2	Intergenic	novelGene_3606	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	82	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAGGAATCTGCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	18854586	18859460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_18854906_18858963
72141	chr17	-	1172	2	NNC	ENSMUSG00000023971.10	novel	2274	7	NA	NA	-14	132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTTCTGGAGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	46985227	46978251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46978422_46984225
72142	chr6	-	1456	1	Intergenic	novelGene_4136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAACGTAAGTTGCCTTTA	NA	False	NA	NA	False	NA	NA	NA	34693463	34692007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_34692000_34693500
72143	chr18	-	1400	7	NIC	ENSMUSG00000063889.17	novel	2931	9	NA	NA	2	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	33.6930589620803	2	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAATACAATATATAGCC	-3	True	NA	NA	False	NA	NA	NA	3337486	3267538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3268130_3273421_3273579_3287903_3288093_3295039_3295183_3295321_3295417_3325360_3325479_3337379
72145	chr13	+	1797	1	NIC	ENSMUSG00000097502.3	novel	1348	3	NA	NA	1098	-926	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGTTAAATGCTTTCT	6511	False	NA	NA	False	NA	NA	NA	59882561	59884358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_59882600_59884400
72146	chr10	-	801	4	ISM	ENSMUSG00000003346.15	ENSMUST00000003436.12	1468	5	3811	0	94	0	3prime_fragment	TRUE	canonical	3	372	junction_3	33.2565782966318	101	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGCTTGGCTCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	80422364	80419487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_80419898_80419976_80420157_80421441_80421637_80422348
72147	chr6	-	563	2	Intergenic	novelGene_4219	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	5	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATCACATGTCATGTTCA	NA	False	NA	NA	False	NA	NA	NA	110548073	110546116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_110546559_110547952
72148	chr19	+	466	5	NNC	ENSMUSG00000108414.2	novel	744	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	410.372011106995	1	28	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	8701503	8703807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8701554_8701740_8701840_8702321_8702411_8702585_8702609_8703602
72150	chr3	-	1929	1	Intergenic	novelGene_3166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCCATACCCACCCCCC	NA	False	NA	NA	False	NA	NA	NA	98231434	98229505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_98229500_98231400
72151	chr17	+	2311	13	ISM	ENSMUSG00000023868.18	ENSMUST00000115708.2	2471	14	1243	-4	1243	4	3prime_fragment	FALSE	canonical	1	3	junction_4	1.70579079087156	5	32	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCCTCCAGCAAGCAAAT	NA	False	NA	NA	False	NA	NA	NA	9165643	9201227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_9165680_9168181_9168325_9170328_9170422_9172568_9172756_9180691_9180835_9181719_9181804_9183396_9183548_9186250_9186407_9188359_9188533_9193554_9193667_9195967_9196049_9197736_9197826_9200364
72152	chr12	+	1404	5	Antisense	novelGene_ENSMUSG00000021087.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAAGCGGCCCCGGGCGC	NA	False	NA	NA	False	NA	NA	NA	72258581	72283472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_72259410_72264205_72264263_72266031_72266172_72270105_72270316_72283303
72153	chr7	+	1429	9	NIC	ENSMUSG00000015980.15	novel	351	4	NA	NA	7	-1	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	3.53553390593274	51	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCAAACTGTTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	138800533	138822886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_138800555_138801309_138801369_138803504_138803658_138805916_138806278_138807835_138807983_138810118_138810213_138816785_138816905_138818491_138818616_138822535
72154	chr19	-	851	2	FSM	ENSMUSG00000024797.15	ENSMUST00000160590.2	840	2	-11	0	-8	0	multi-exon	FALSE	canonical	3	178	junction_1	0	96	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGTAACTTTTGTTTC	1007	False	NA	NA	False	NA	NA	NA	6127241	6125932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6126523_6126980
72155	chr3	+	686	7	NNC	ENSMUSG00000091512.6	novel	1295	7	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	103.238666313655	41	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGTACCGAATGAGCTC	60	False	NA	NA	False	NA	NA	NA	137624266	137634515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137634325
72156	chr15	-	1255	2	FSM	ENSMUSG00000042895.7	ENSMUST00000054742.7	2979	2	-7	1731	-7	-1731	multi-exon	FALSE	canonical	0	0	junction_1	0	4	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATGTTATCAATATTAAAT	NA	False	NA	NA	False	NA	NA	NA	41733123	41729202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_41729749_41732414
72157	chr15	+	1031	1	Intergenic	novelGene_3374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTGGACTGGGAATCAAT	NA	False	NA	NA	False	NA	NA	NA	100436939	100437970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_100436900_100438000
72158	chr18	+	1678	2	Antisense	novelGene_ENSMUSG00000093774.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	8	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGGGGGTAGGCTTGTT	26	False	NA	NA	False	NA	NA	NA	3000190	3046503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_3000266_3044900
72159	chr16	+	169	2	Intergenic	novelGene_3570	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGCATTAGAAGGATCT	NA	False	NA	NA	False	NA	NA	NA	3201576	3215068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_3201584_3214906
72160	chr6	+	1192	1	NIC	ENSMUSG00000047115.16	novel	2730	7	NA	NA	24	-7204	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTGTCTTCAGACACAC	NA	False	NA	NA	False	NA	NA	NA	49344780	49345972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_49344800_49346000
72161	chr8	+	816	3	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	293	-30	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_1	43	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAAATAAATGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	126462866	126474944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_126462965_126471974_126472185_126474436
72164	chr7	+	623	1	ISM	ENSMUSG00000069806.6	ENSMUST00000092891.6	2212	6	34264	380	29003	-380	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCCTCTTTCAAGGGC	4241	False	NA	NA	False	NA	NA	NA	3415734	3416357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3415700_3416400
72166	chr7	-	691	6	FSM	ENSMUSG00000030417.16	ENSMUST00000118501.8	684	6	-3	-4	-3	4	multi-exon	FALSE	canonical	3	1740	junction_2	86.0883267348135	4193	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATCTGCATTTTGAATG	NA	False	NA	NA	False	NA	NA	NA	35346949	35341402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346730
72167	chr2	+	1149	9	NNC	ENSMUSG00000027196.12	novel	1549	5	NA	NA	600	27160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	103	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGGGAACCTTCAGAGTG	NA	False	NA	NA	False	NA	NA	NA	93810978	93841080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_93811323_93811860_93811964_93826529_93826738_93833397_93833501_93835076_93835126_93837191_93837230_93838386_93838488_93838787_93838940_93841029
72168	chr6	-	461	1	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	2	-16237	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAAATAGATGCGACAGT	NA	False	NA	NA	False	NA	NA	NA	83483887	83483426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83483400_83483900
72169	chr17	+	494	5	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	547.967380416024	2	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165719	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176140_21186081
72172	chr3	-	1485	2	ISM	ENSMUSG00000036615.8	ENSMUST00000182246.2	478	3	324	-1047	324	-59	3prime_fragment	FALSE	canonical	3	271	junction_1	0	41	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGAAAAAGACCCTTTT	NA	False	NA	NA	False	NA	NA	NA	54712863	54710594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_54711997_54712780
72176	chr8	+	2244	14	FSM	ENSMUSG00000055368.15	ENSMUST00000072939.8	6187	14	295	3648	295	-3648	multi-exon	TRUE	canonical	0	0	junction_1	0.461538461538462	2	56	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATCTTCCATTCACCCAG	NA	False	NA	NA	False	NA	NA	NA	93687855	93724647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_93688150_93697797_93697930_93699379_93699618_93708529_93708669_93715646_93715782_93716753_93716858_93717970_93718096_93719433_93719547_93720644_93720774_93721261_93721362_93722243_93722345_93722594_93722763_93723641_93723714_93724253
72177	chr7	+	897	3	ISM	ENSMUSG00000078776.10	ENSMUST00000150948.2	7895	19	32701	-16	32701	0	3prime_fragment	FALSE	canonical	3	5	junction_2	2.5	33	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTCTCCTGCTGTCT	1338	False	NA	NA	False	NA	NA	NA	27861941	27864236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27862400_27863693_27863966_27864069
72178	chr16	+	1379	3	Genic_Genomic	ENSMUSG00000116625.2	novel	1523	1	NA	NA	-1317	2223	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGATAAAATAGATTTTAA	NA	False	NA	NA	False	NA	NA	NA	22910375	22915438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_22910428_22912386_22913428_22915152
72179	chr7	+	1015	1	Intergenic	novelGene_3004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGCTCTCCTGGCCTTCT	NA	False	NA	NA	False	NA	NA	NA	98306136	98307151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_98306100_98307200
72181	chr7	-	259	2	NNC	ENSMUSG00000030530.16	novel	4286	16	NA	NA	6771	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGTCTCCAGTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	80039330	80038941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_80039178_80039307
72183	chr17	-	1016	2	NNC	ENSMUSG00000047150.9	novel	614	2	NA	NA	-608	-171	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	0	26	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGGTTTT	5946	False	NA	NA	False	NA	NA	NA	47733413	47723829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47724820_47733387
72185	chr3	-	636	1	Antisense	novelGene_ENSMUSG00000097584.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACCCAGAAGCAGTTTTG	737	False	NA	NA	False	NA	NA	NA	27209100	27208464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_27208500_27209100
72186	chr9	+	1330	3	FSM	ENSMUSG00000032184.6	ENSMUST00000213292.2	1241	3	-92	3	-92	-3	multi-exon	FALSE	canonical	0	0	junction_1	30.5	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACAGGAGCCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	75533427	75545045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_75533874_75542667_75543000_75544493
72188	chr1	+	266	4	Antisense	novelGene_ENSMUSG00000102651.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGGCGGCCCTTGCATTC	NA	False	NA	NA	False	NA	NA	NA	138460541	138489458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_138460586_138462101_138462165_138471940_138472082_138489440
72189	chr1	-	1015	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	26	3239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1100.24049138763	1	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACCCTTGATACTTGTAA	NA	False	NA	NA	False	NA	NA	NA	13730744	13696979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700426_13708466_13708634_13717608_13717736_13720944_13721106_13730552
72191	chr9	+	2088	1	Intergenic	novelGene_1095	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCCCCGCCCCCCCCCAA	NA	False	NA	NA	False	NA	NA	NA	63661631	63663719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_63661600_63663700
72193	chr5	+	393	4	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-22	-217	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	10371.0459774637	493	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACTCCGGTCTGGATTT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115698852_115701355
72194	chr1	-	748	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12978	4	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_3	4.02768199119819	5	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATGTCAGCTCTTTCTG	9753	False	NA	NA	False	NA	NA	NA	65149295	65144439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65144910_65148620_65148736_65149035_65149124_65149220
72195	chr1	+	980	1	Intergenic	novelGene_361	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTCATGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	42891360	42892340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_42891400_42892300
72196	chr19	+	373	1	ISM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	3201	1173	3091	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACATGGCTTTTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	5543683	5544056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5543700_5544100
72197	chr2	+	1451	2	Genic_Genomic	ENSMUSG00000091337.4	novel	1691	1	NA	NA	26	-4	multi-exon	FALSE	canonical	0	0	junction_1	0	48	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTGCTTTGTCTAAT	NA	False	NA	NA	False	NA	NA	NA	125515040	125516701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_125515199_125515408
72198	chr2	-	2267	13	Intergenic	novelGene_2708	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGAGATGGTGTGGGGAG	4932	False	NA	NA	False	NA	NA	NA	129890460	129854282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_129854328_129865606_129865781_129866262_129866503_129867175_129867295_129868602_129868732_129871542_129871721_129871818_129871956_129879391_129879495_129880280_129880527_129883674_129883990_129886424_129886579_129889605_129889742_129890169
72200	chr4	+	689	3	FSM	ENSMUSG00000028643.12	ENSMUST00000097908.4	832	3	143	0	143	0	multi-exon	FALSE	canonical	2	48	junction_1	197.5	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	119052835	119058495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_119052973_119053068_119053219_119058093
72202	chr11	+	916	2	FSM	ENSMUSG00000049604.4	ENSMUST00000062709.4	2206	2	396	894	396	-894	multi-exon	FALSE	canonical	2	9	junction_1	0	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGAGCTGATTGTGAATA	4340	False	NA	NA	False	NA	NA	NA	96085537	96087379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_96085873_96086798
72205	chr2	-	2032	2	FSM	ENSMUSG00000087633.2	ENSMUST00000138288.2	2146	2	116	-2	116	2	multi-exon	FALSE	canonical	0	0	junction_1	0	2	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGCTTATACTGTGCTCT	NA	False	NA	NA	False	NA	NA	NA	172282364	172267721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172269686_172282296
72206	chr7	-	935	5	NNC	ENSMUSG00000025102.15	novel	887	5	NA	NA	2	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	124.117635733203	8	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTATCAGGAGCAATG	NA	False	NA	NA	False	NA	NA	NA	81439211	81431947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81432330_81432778_81432887_81435824_81436036_81438197_81438319_81439098
72207	chr6	+	1171	4	NNC	ENSMUSG00000029816.11	novel	3701	11	NA	NA	-15	-2473	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.2377309736236	10	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATCAGATGTGATTGCTA	NA	False	NA	NA	False	NA	NA	NA	49013583	49022812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_49013727_49019700_49019854_49020930_49021075_49022081
72209	chr7	+	1010	9	NNC	ENSMUSG00000066232.5	novel	3867	17	NA	NA	-6	-7352	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	388.96929104365	1	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATATGGCGCCTCGAGTT	7233	False	NA	NA	False	NA	NA	NA	109617515	109641224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639825_109639872_109640019_109640105_109641187
72211	chr11	-	972	4	FSM	ENSMUSG00000020925.17	ENSMUST00000153157.8	989	4	0	17	0	-17	multi-exon	FALSE	canonical	0	0	junction_1	267.304237818175	150	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAATGCACCACCACAC	NA	False	NA	NA	False	NA	NA	NA	102588560	102579161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102579686_102581026_102581163_102582936_102583025_102588336
72213	chr19	-	782	3	FSM	ENSMUSG00000071658.6	ENSMUST00000096259.6	1643	3	-16	877	-16	-877	multi-exon	TRUE	canonical	3	189	junction_2	8	936	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAACGTCTGTGTTAGCG	4746	False	NA	NA	False	NA	NA	NA	8816574	8815173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8815636_8815917_8816018_8816354
72214	chr13	-	1574	7	FSM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	-6	24	-6	-24	multi-exon	FALSE	canonical	3	24	junction_1	8.51958527942137	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAAATTTTGTGTGGGTC	2364	False	NA	NA	False	NA	NA	NA	81781266	81727183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
72218	chr6	+	2386	15	ISM	ENSMUSG00000029757.17	ENSMUST00000115554.4	2518	16	31564	9	-43	0	3prime_fragment	FALSE	canonical	0	0	junction_4	1.47253772343488	7	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCGTAATGAGAGGACTC	NA	False	NA	NA	False	NA	NA	NA	5757375	6028030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_5757495_5767029_5767145_5769700_5769792_5800774_5800891_5905104_5905195_5913315_5913479_5915829_5915930_5923164_5923291_5961840_5961988_5966702_5966817_5969373_5969508_5972064_5972210_6006269_6006411_6010454_6010581_6027371
72219	chr9	-	2069	1	ISM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	63312	579	17686	-579	mono-exon	FALSE	NA	NA	NA	NA	NA	13	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAATGTGTTTAAAAGT	NA	False	NA	NA	False	NA	NA	NA	87074277	87072208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_87072200_87074300
72221	chr7	+	1082	6	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	-310	262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	223.457915500884	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCCAGCCCAGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	100146092	100148771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100146156_100146301_100146517_100147290_100147480_100147554_100147657_100147939_100148124_100148442
72222	chr7	+	1177	3	NNC	ENSMUSG00000109176.2	novel	1563	3	NA	NA	7985	280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCCCAGACAAACCTATGG	NA	False	NA	NA	False	NA	NA	NA	6992186	6993547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6992745_6992829_6993058_6993156
72224	chr2	-	1168	1	ISM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	177900	14	1972	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAGGTCAAAACTCTGT	NA	False	NA	NA	False	NA	NA	NA	18219741	18218573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_18218600_18219700
72226	chr3	+	668	1	ISM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	8567	395	7864	-387	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTGACTGATGTGCCAC	NA	False	NA	NA	False	NA	NA	NA	102974167	102974835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_102974200_102974800
72227	chr10	-	736	3	FSM	ENSMUSG00000078453.4	ENSMUST00000020002.9	846	3	110	0	40	0	multi-exon	FALSE	canonical	3	143	junction_1	12	2559	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGGTGGCTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	17898926	17887007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_17887565_17894586_17894654_17898814
72228	chr7	+	1261	1	Intergenic	novelGene_3015	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTATTTTCTAATGTTCCC	NA	False	NA	NA	False	NA	NA	NA	106827238	106828499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_106827200_106828500
72229	chr11	+	728	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	7	2	7	-2	multi-exon	FALSE	canonical	3	940	junction_1	75.5	131	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAACTGTTTCTGTGGTC	2459	False	NA	NA	False	NA	NA	NA	97576785	97579445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97577042_97577326_97577447_97579093
72231	chr13	+	754	5	FSM	ENSMUSG00000050002.15	ENSMUST00000051490.15	764	5	13	-3	8	3	multi-exon	FALSE	canonical	3	14	junction_4	87.5928079239386	479	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGCTGTACTGTAAATTC	NA	False	NA	NA	False	NA	NA	NA	58305475	58311763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58310651_58310696_58311246
72232	chrX	-	819	4	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	3929	-15	3929	15	3prime_fragment	FALSE	canonical	3	106	junction_3	6.34209919681348	331	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTATTCATGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	36481982	36477441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_36477701_36479202_36479249_36481305_36481649_36481811
72233	chr16	-	740	2	FSM	ENSMUSG00000059305.13	ENSMUST00000232670.2	415	2	-6	-319	-6	2	multi-exon	FALSE	canonical	3	7	junction_1	0	56	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTCTGGCTGGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	16688713	16686264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16686843_16688551
72235	chr19	-	899	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	-72	16	33	-5	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	1248	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCATAGTTGAAATAGTAT	NA	False	NA	NA	False	NA	NA	NA	46561604	46519550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
72236	chr10	-	1985	2	FSM	ENSMUSG00000051652.5	ENSMUST00000057608.5	4296	2	77	2234	77	-2234	multi-exon	FALSE	canonical	1	2	junction_1	0	6	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATGTCGTCATCGAGTAT	4387	False	NA	NA	False	NA	NA	NA	77738293	77735642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77737567_77738232
72237	chr5	-	1870	1	Genic_Intron	novelGene_753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTACGGAGGCACCTTACG	NA	False	NA	NA	False	NA	NA	NA	96359922	96358052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Intron_chr5_-_96358100_96359900
72238	chr7	-	896	12	NNC	ENSMUSG00000064179.14	novel	1059	14	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	20.3640422037481	121	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTTAAGTTCTTCAGG	9181	False	NA	NA	False	NA	NA	NA	4518974	4507667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515286_4516809_4516837_4517323_4517379_4518929
72239	chr13	+	1602	1	Antisense	novelGene_ENSMUSG00000021311.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGCAATAAAAGATAGTAAG	NA	False	NA	NA	False	NA	NA	NA	12263975	12265577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_12264000_12265600
72242	chr16	+	551	1	Intergenic	novelGene_3845	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATGACTATGTATACATC	NA	False	NA	NA	False	NA	NA	NA	65359854	65360405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_65359900_65360400
72244	chr11	-	1356	3	ISM	ENSMUSG00000045374.19	ENSMUST00000117392.9	6625	10	9644	63	4986	-61	3prime_fragment	FALSE	canonical	2	7	junction_2	2.5	9	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTCTCACTAGTTGCAG	8702	False	NA	NA	False	NA	NA	NA	75335620	75331836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75332916_75335080_75335261_75335523
72246	chr9	-	830	6	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	297.891658157794	39	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATCAATGTTTTATT	9046	False	NA	NA	False	NA	NA	NA	58648846	58560160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58560390_58565039_58565127_58567491_58567655_58573115_58573200_58619298_58619389_58648669
72247	chr8	+	636	1	ISM	ENSMUSG00000031732.13	ENSMUST00000179721.8	7846	19	75422	10	75414	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTCCATGCCTGTGC	NA	False	NA	NA	False	NA	NA	NA	110670656	110671292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_110670700_110671300
72248	chr19	+	2012	1	Intergenic	novelGene_1294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGCATCTTACCCGAGAA	NA	False	NA	NA	False	NA	NA	NA	57633883	57635895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_57633900_57635900
72249	chr1	-	2212	3	ISM	ENSMUSG00000047216.9	ENSMUST00000094626.5	3914	12	81868	16	81868	-16	3prime_fragment	FALSE	canonical	0	0	junction_1	0	4	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAAAGAATATCATTTT	NA	False	NA	NA	False	NA	NA	NA	110823225	110816071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_110817919_110820914_110821167_110823112
72250	chr17	-	1027	7	NNC	ENSMUSG00000014771.14	novel	1120	6	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	325.810101473577	701	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATGCCTCAGTACCTCAT	NA	False	NA	NA	False	NA	NA	NA	15747560	15741840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252_15747366_15747451
72251	chr2	-	1022	9	ISM	ENSMUSG00000027233.5	ENSMUST00000028665.5	2434	18	60870	200	60870	-200	3prime_fragment	FALSE	canonical	3	89	junction_8	14.1399257423793	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCTTAAAATCTAGGTGA	46	False	NA	NA	False	NA	NA	NA	121955800	121950788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_121950930_121951640_121951790_121952264_121952360_121954198_121954340_121954816_121954977_121955099_121955234_121955327_121955382_121955562_121955661_121955750
72252	chr6	+	2275	1	Intergenic	novelGene_4128	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATGAAACAGAAGGCTCC	NA	False	NA	NA	False	NA	NA	NA	28680561	28682836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_28680600_28682800
72253	chr16	+	536	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	-15	199	-15	-199	multi-exon	FALSE	canonical	3	12	junction_2	127.027556065603	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGTTAAGTTGTATATG	NA	False	NA	NA	False	NA	NA	NA	32238548	32247714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
72254	chr5	+	1048	6	NNC	ENSMUSG00000029660.11	novel	1456	7	NA	NA	-1	103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.979795897113271	1	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATTGTTGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	149363178	149394188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149363253_149369234_149369324_149376758_149376925_149384285_149384463_149386581_149386744_149393808
72256	chr12	-	1524	4	FSM	ENSMUSG00000037904.15	ENSMUST00000135131.2	1563	4	23	16	23	-16	multi-exon	FALSE	canonical	0	0	junction_1	45.784519460427	40	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGATCGTTGACTGTACA	NA	False	NA	NA	False	NA	NA	NA	110945406	110942878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110943983_110944097_110944205_110944381_110944562_110945273
72257	chr12	+	935	4	Antisense	novelGene_ENSMUSG00000021056.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	9	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATGTACCAACACAAGGAT	NA	False	NA	NA	False	NA	NA	NA	76250763	76261494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_76251087_76253562_76253768_76259147_76259294_76261233
72258	chr1	+	769	4	FSM	ENSMUSG00000026051.9	ENSMUST00000027217.9	902	4	101	32	101	-32	multi-exon	FALSE	canonical	2	3	junction_3	0.816496580927726	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAGAAATAAAAGCATTTAA	NA	False	NA	NA	False	NA	NA	NA	43769862	43781706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43770124_43776359_43776408_43777719_43777878_43781404
72259	chr6	-	1781	4	ISM	ENSMUSG00000003476.17	ENSMUST00000114374.9	1440	12	24383	-1145	7043	-19	3prime_fragment	FALSE	canonical	1	1	junction_2	0.942809041582063	13	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAACTTTGAAAACGTA	NA	False	NA	NA	False	NA	NA	NA	55070515	55067052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_55068404_55069497_55069540_55069936_55070073_55070263
72262	chr11	-	971	4	FSM	ENSMUSG00000025163.7	ENSMUST00000026159.6	982	4	-23	34	-23	-34	multi-exon	FALSE	canonical	3	9	junction_2	2.49443825784929	66	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATTAAATAAACACACAA	7873	False	NA	NA	False	NA	NA	NA	120930267	120927606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120927977_120928505_120928643_120928861_120929177_120930118
72264	chr1	+	721	5	NNC	ENSMUSG00000026473.17	novel	2792	7	NA	NA	363	92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	63.3615616916124	2	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCTCGTGCCCAGTTAA	NA	False	NA	NA	False	NA	NA	NA	153782151	153784020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_153782242_153782765_153782894_153783031_153783232_153783609_153783723_153783830
72265	chr19	-	1007	7	FSM	ENSMUSG00000024962.14	ENSMUST00000025914.7	1281	7	274	0	-237	0	multi-exon	FALSE	canonical	3	141	junction_2	52.2323867176508	162	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTGCTTCTGTCATTGT	5032	False	NA	NA	False	NA	NA	NA	6964745	6959840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6960236_6962728_6962965_6963172_6963209_6963388_6963463_6963657_6963855_6964141_6964185_6964719
72267	chr7	+	1930	3	ISM	ENSMUSG00000030897.6	ENSMUST00000033187.6	2484	6	1035	38	981	-38	3prime_fragment	FALSE	canonical	2	2	junction_1	1	1	80	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTGTGACTTATTAAT	NA	False	NA	NA	False	NA	NA	NA	105054809	105057911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_105055335_105056007_105056358_105056856
72268	chr4	-	1289	4	FSM	ENSMUSG00000028610.17	ENSMUST00000069271.5	1861	4	541	31	-109	-31	multi-exon	FALSE	canonical	3	6	junction_2	4.18993502999218	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGACAGTATTAAATAAAGTG	NA	False	NA	NA	False	NA	NA	NA	107540886	107533519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_107534267_107536449_107536673_107537842_107538052_107540776
72270	chr10	-	1608	1	ISM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	86137	12	23824	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	34	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTAGTGGCAGCTGAGTA	NA	False	NA	NA	False	NA	NA	NA	66846587	66844979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_66845000_66846600
72271	chr7	-	507	6	NNC	ENSMUSG00000090862.4	novel	589	6	NA	NA	-15	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4670.5292034201	2	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAATAAAATCACTTTGAG	NA	False	NA	NA	False	NA	NA	NA	115933385	115930767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933143_115933184_115933319
72272	chr11	+	698	4	NIC	ENSMUSG00000083844.9	novel	1840	7	NA	NA	9	-1216	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	40.7621829095984	143	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGCCTGGGCTCTAGTG	NA	False	NA	NA	False	NA	NA	NA	5712137	5730660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_5712241_5715508_5715572_5719166_5719244_5730205
72273	chr9	+	428	5	FSM	ENSMUSG00000084786.10	ENSMUST00000129414.9	2114	5	1500	186	-3	1	multi-exon	FALSE	canonical	3	1046	junction_4	63.2114507031756	37	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGCTGTCATACTTGTG	NA	False	NA	NA	False	NA	NA	NA	20556113	20558074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556956_20557911
72274	chr6	+	1059	2	ISM	ENSMUSG00000071506.5	ENSMUST00000095987.4	1147	3	1286	19	1286	-17	3prime_fragment	FALSE	canonical	0	0	junction_1	0	12	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTCGAATCAAATTCCAAT	NA	False	NA	NA	False	NA	NA	NA	42240189	42241470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_42240440_42240661
72275	chr18	+	625	2	ISM	ENSMUSG00000024578.4	ENSMUST00000025471.4	693	3	2181	0	2181	0	3prime_fragment	FALSE	canonical	2	6	junction_1	0	48	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTGATTGGGCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	61823186	61825609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_61823479_61825276
72276	chr15	+	1889	3	NNC	ENSMUSG00000022622.6	novel	1504	5	NA	NA	918	46	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTACACTCGAGGACAT	NA	False	NA	NA	False	NA	NA	NA	89453503	89458677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_89453747_89453948_89454233_89457315
72277	chr11	+	1453	6	NNC	ENSMUSG00000018377.11	novel	4583	6	NA	NA	55	-5139	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	40.4257343779924	17	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTATTGTGTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	87959159	87970416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87959260_87963882_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87970159
72278	chr16	-	528	4	Intergenic	novelGene_3858	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1292	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTACAAGTCCCGAAATGCA	NA	False	NA	NA	False	NA	NA	NA	92109929	92098164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_92098232_92102175_92102284_92107686_92107861_92109750
72281	chr6	-	1639	9	FSM	ENSMUSG00000053604.6	ENSMUST00000066134.6	1829	9	186	4	-43	-4	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	73	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATCCTTTGTCTTCTCTG	8191	False	NA	NA	False	NA	NA	NA	70769030	70742707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_70743633_70747977_70748078_70750413_70750556_70751234_70751304_70752092_70752158_70754335_70754396_70760544_70760601_70762528_70762590_70768869
72282	chr7	-	525	5	NNC	ENSMUSG00000003429.12	novel	661	5	NA	NA	-21	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12694.3891419595	1	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATTTTCCAACGTACAGA	NA	False	NA	NA	False	NA	NA	NA	44773796	44771825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44771983_44772292_44772383_44772586_44772663_44772842_44772969_44773720
72284	chr8	-	436	1	Intergenic	novelGene_1688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTTAGGGGGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88925639	88925203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_88925200_88925600
72285	chr16	+	863	5	Intergenic	novelGene_3875	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	11.3247516529061	89	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGGTTTCCTGGCCTG	NA	False	NA	NA	False	NA	NA	NA	94656129	94670834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_94656205_94659190_94659253_94667462_94667539_94669776_94670200_94670607
72286	chr9	-	1836	13	ISM	ENSMUSG00000034684.13	ENSMUST00000192727.6	2383	18	15801	-40	162	40	3prime_fragment	TRUE	canonical	3	9	junction_1	3.63910092681634	6	20	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATAAAAGATATATATAT	6	True	NA	NA	False	NA	NA	NA	107566954	107559576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107560039_107560758_107560893_107561171_107561240_107561420_107561579_107561748_107561791_107561886_107561976_107562523_107562747_107564388_107564534_107564688_107564759_107564928_107565044_107565147_107565288_107565428_107565549_107566884
72287	chr9	-	1466	1	Intergenic	novelGene_1103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAACCTGCCGGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	70178560	70177094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_70177100_70178600
72288	chr11	-	744	4	NIC	ENSMUSG00000020736.13	novel	858	5	NA	NA	1	-5	combination_of_known_splicesites	FALSE	canonical	2	5	junction_2	87.1359091687616	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGAGGCTTTGGATCTTTG	NA	False	NA	NA	False	NA	NA	NA	115382640	115381250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115381571_115381678_115381794_115382096_115382198_115382432
72289	chr7	+	1528	2	Antisense	novelGene_ENSMUSG00000097415.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	78	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGACAAAGGGATGGGGG	NA	False	NA	NA	False	NA	NA	NA	75426230	75428000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_75426542_75426783
72290	chr11	+	645	1	Intergenic	novelGene_2409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTCTTACGCCTGTGCT	6108	False	NA	NA	False	NA	NA	NA	77776991	77777636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_77777000_77777600
72291	chr7	-	386	1	ISM	ENSMUSG00000074227.13	ENSMUST00000207601.2	1304	7	25176	28	8454	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAAAACTTACTATGT	6170	False	NA	NA	False	NA	NA	NA	28956161	28955775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28955800_28956200
72292	chr17	+	525	1	Genic_Genomic	ENSMUSG00000049823.10	novel	NA	NA	NA	NA	2299	515	mono-exon	FALSE	NA	NA	NA	NA	NA	34	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAACAAAAACATTTTTT	5059	False	NA	16	True	NA	NA	NA	35115833	35116358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_35115800_35116400
72294	chr1	-	1510	6	FSM	ENSMUSG00000008136.15	ENSMUST00000008280.14	1563	6	30	23	30	-23	multi-exon	FALSE	canonical	1	1	junction_1	0.4	12	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAATAAAACATTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	43203091	43162256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_43162826_43167403_43167591_43170811_43170982_43180857_43181033_43192235_43192415_43202861
72295	chr11	-	811	2	NNC	ENSMUSG00000039670.3	novel	813	2	NA	NA	24	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	208	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATGCAGGGGCTTTTG	983	False	NA	NA	False	NA	NA	NA	120348870	120347434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120347989_120348613
72296	chr11	+	1963	1	Intergenic	novelGene_2224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCATCGAGCGTTAAGCTT	NA	False	NA	NA	False	NA	NA	NA	16898917	16900880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_16898900_16900900
72298	chr3	-	1093	4	ISM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	2763	1	-2023	-1	3prime_fragment	TRUE	canonical	3	11	junction_1	1.69967317119759	39	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCTGCTGCCTTCCATCT	8464	False	NA	NA	False	NA	NA	NA	88452844	88449336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367
72299	chr19	+	1586	1	Intergenic	novelGene_1195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCCCCAACACTGACCTA	NA	False	NA	NA	False	NA	NA	NA	5165614	5167200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_5165600_5167200
72300	chr17	+	1405	1	NIC	ENSMUSG00000024014.9	novel	2698	6	NA	NA	253	-801	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACGAGGCTAGCACCTTTT	NA	False	NA	NA	False	NA	NA	NA	29710531	29711936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29710500_29711900
72301	chr17	-	537	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	-24	7	-1	-5	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTACTTAAATAGACTT	6006	False	NA	NA	False	NA	NA	NA	35171448	35169223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
72304	chr18	+	796	4	NNC	ENSMUSG00000046727.14	novel	1101	4	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	350.637831514069	25	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGTGACTTACTCCAG	NA	False	NA	NA	False	NA	NA	NA	36481837	36536031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36481870_36499567_36499795_36501814_36501870_36535549
72306	chr3	+	437	2	Genic_Genomic	ENSMUSG00000060438.6	novel	495	1	NA	NA	-36	51	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGCTCACAACAATCAGAA	70	False	NA	NA	False	NA	NA	NA	95529552	95530134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_95529766_95529910
72307	chr8	+	922	1	Genic_Genomic	ENSMUSG00000110537.2	novel	NA	NA	NA	NA	212	829	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTATCCACTTCAAGCTT	3540	False	NA	NA	False	NA	NA	NA	123899795	123900717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_123899800_123900700
72308	chr9	-	802	3	NNC	ENSMUSG00000086158.3	novel	711	2	NA	NA	63	-13	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	3.5	315	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTCAAAACACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	72892595	72887016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_72887479_72891080_72891248_72892422
72309	chr11	+	1289	4	NNC	ENSMUSG00000001558.6	novel	2017	5	NA	NA	-778	-7	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	6.59966329107444	73	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAACTTGTAAGAGTACTG	NA	False	NA	NA	False	NA	NA	NA	100331964	100347841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100332042_100337946_100338565_100347109_100347260_100347397
72310	chr6	-	803	1	Antisense	novelGene_ENSMUSG00000071237.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTCATCCATTTGCT	NA	False	NA	NA	False	NA	NA	NA	117786506	117785703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_117785700_117786500
72311	chr4	+	1919	11	NNC	ENSMUSG00000001985.10	novel	8973	16	NA	NA	119012	-53527	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.0079968025574	8	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCGGATGCCTGGACTTG	NA	False	NA	NA	False	NA	NA	NA	125503504	125554439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125503549_125505691_125505758_125517273_125517451_125526060_125526319_125533073_125533256_125535336_125535391_125543471_125543646_125544240_125544385_125550080_125550189_125553481_125553596_125553841
72312	chr9	+	686	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	48024	-4	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	0	152	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGATCTGCCTTGTTCAA	4058	False	NA	NA	False	NA	NA	NA	111316172	111318182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_111316269_111317592
72313	chr15	-	1301	3	FSM	ENSMUSG00000097915.3	ENSMUST00000229239.2	484	3	7	-824	7	-6	multi-exon	FALSE	canonical	3	7	junction_2	0.5	32	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGATGCCGCCTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	101122651	101119081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_101120071_101121361_101121515_101122492
72316	chr3	-	2200	1	Intergenic	novelGene_3179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTGATTGGTCCACATG	NA	False	NA	NA	False	NA	NA	NA	116432787	116430587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_116430600_116432800
72317	chr11	+	1028	4	NNC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	161.765948895997	4	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTTTAGAGAACTGTCCC	NA	False	NA	NA	False	NA	NA	NA	32176504	32182006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_32176697_32177751_32177950_32179848_32180054_32181573
72319	chr10	-	1179	1	Antisense	novelGene_ENSMUSG00000090112.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCAGGTCGGTAGATG	2545	False	NA	NA	False	NA	NA	NA	11043045	11041866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_11041900_11043000
72320	chr6	+	1281	7	NNC	ENSMUSG00000063870.13	novel	6652	39	NA	NA	2726	-75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	247.098271049305	1	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAGAACCAAAAG	2362	False	NA	-28	True	NA	NA	NA	125099455	125107473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125099510_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782_125107105_125107144
72321	chr3	-	1059	5	FSM	ENSMUSG00000050174.16	ENSMUST00000052645.13	1155	5	28	68	-2	4	multi-exon	FALSE	canonical	1	4	junction_4	11.8743420870379	39	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCTAATCCTCACTGGGT	NA	False	NA	NA	False	NA	NA	NA	37473717	37459126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473490
72322	chr11	-	1962	1	Intergenic	novelGene_2537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACAGAGATAGGTCTGCA	NA	False	NA	NA	False	NA	NA	NA	117751459	117749497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_117749500_117751500
72323	chr15	+	1070	5	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6713	-10	-79	7	3prime_fragment	FALSE	canonical	3	32	junction_1	46.916814683011	597	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTGTTTTTACTTCTT	NA	False	NA	NA	False	NA	NA	NA	102360514	102363075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
72324	chr6	+	398	2	ISM	ENSMUSG00000030007.9	ENSMUST00000204592.3	1544	11	15631	-105	5571	-88	3prime_fragment	FALSE	canonical	3	6547	junction_1	0	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTTTTTCATAAA	2994	False	NA	NA	False	NA	NA	NA	85444704	85445369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_85444768_85445034
72326	chr6	+	290	1	Intergenic	novelGene_4147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	39414815	39415105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_39414800_39415100
72327	chr7	+	567	5	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1497	10	-9	0	3prime_fragment	FALSE	canonical	3	1768	junction_4	19.9311314279947	3179	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	4457	False	NA	NA	False	NA	NA	NA	126812276	126813460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
72328	chr8	-	925	1	ISM	ENSMUSG00000057672.17	ENSMUST00000005616.16	6662	22	31705	14	4306	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGGATAAAATCTAAACAC	NA	False	NA	NA	False	NA	NA	NA	84394103	84393178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_84393200_84394100
72329	chr17	-	1652	1	Intergenic	novelGene_17	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACATTTTAAGTCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	14113325	14111673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_14111700_14113300
72332	chr4	+	790	1	Intergenic	novelGene_1952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTTAAGTCTCTGAAGA	NA	False	NA	NA	False	NA	NA	NA	126862367	126863157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_126862400_126863200
72333	chr9	-	876	1	Intergenic	novelGene_1168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTGTCTCCAAAAACCAAAA	NA	False	NA	NA	False	NA	NA	NA	111351538	111350662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_111350700_111351500
72335	chr5	-	732	2	Antisense	novelGene_ENSMUSG00000106674.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	60	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149572452	149571080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_149571694_149572333
72338	chr5	+	1821	10	ISM	ENSMUSG00000038011.16	ENSMUST00000196708.2	6341	27	22699	-177	22699	-1	3prime_fragment	FALSE	canonical	1	2	junction_3	2.28251539824157	7	29	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGGTTTGTGTGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	124905100	124911366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_124905281_124905498_124905709_124905836_124905933_124906588_124906761_124907091_124907224_124907390_124907603_124907696_124907865_124909513_124909695_124910488_124910635_124911042
72339	chr16	+	1033	3	ISM	ENSMUSG00000022721.20	ENSMUST00000059696.12	2082	9	-9	2823	-9	-41	5prime_fragment	FALSE	canonical	3	222	junction_1	39	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATGTTTGATAAGCCAG	379	False	NA	NA	False	NA	NA	NA	18066856	18068543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_18067116_18067349_18067898_18068317
72340	chr4	+	859	4	NNC	ENSMUSG00000073684.14	novel	1076	4	NA	NA	4	55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	97.5807358037436	1	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGAAAAGGGAAAATGGAG	NA	False	NA	NA	False	NA	NA	NA	155334449	155340975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155334497_155334962_155335110_155335212_155335494_155340591
72341	chr17	-	1971	4	NIC	ENSMUSG00000073414.9	novel	729	6	NA	NA	224	-325	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1.88561808316413	4	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTCTGTTTTCTGGAT	NA	False	NA	NA	False	NA	NA	NA	35284922	35281993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35283413_35283661_35283739_35284294_35284386_35284538
72344	chr18	+	826	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	0	7	0	0	multi-exon	FALSE	canonical	3	946	junction_4	54.2425110038243	3614	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCATATGTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	84869462	84897989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
72346	chr18	-	520	5	NNC	ENSMUSG00000049411.16	novel	2802	13	NA	NA	2	-1511	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.61769203083567	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGCTAAGTCAAGTTTC	NA	False	NA	NA	False	NA	NA	NA	12254585	12218559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_12218725_12237155_12237238_12246451_12246530_12251460_12251508_12254437
72347	chr2	-	1140	2	FSM	ENSMUSG00000032715.10	ENSMUST00000124995.2	504	2	-61	-575	1	575	multi-exon	FALSE	canonical	3	926	junction_1	0	9	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACACACACGATTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	152185951	152184282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152185248_152185776
72348	chr5	+	1409	2	FSM	ENSMUSG00000086494.2	ENSMUST00000150265.2	550	2	36	-895	36	895	multi-exon	FALSE	canonical	3	11	junction_1	0	31	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCACGCTTCCCCAAAT	NA	False	NA	NA	False	NA	NA	NA	148678685	148680844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_148678795_148679544
72353	chr10	-	2136	16	FSM	ENSMUSG00000019467.16	ENSMUST00000019611.15	2218	16	82	0	52	0	multi-exon	FALSE	canonical	1	3	junction_14	11.8291541916102	40	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGAGGTTGTTGTCTT	5019	False	NA	NA	False	NA	NA	NA	127025806	127018397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127025363_127025479_127025735
72354	chr7	+	1314	3	FSM	ENSMUSG00000058741.5	ENSMUST00000080288.5	1240	3	-74	0	-74	0	multi-exon	FALSE	canonical	2	7	junction_1	1	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGATTTTCAGTGAGT	2051	False	NA	NA	False	NA	NA	NA	25000761	25003557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_25000900_25002297_25002923_25003006
72355	chr2	-	1014	2	FSM	ENSMUSG00000085633.2	ENSMUST00000150154.2	696	2	26	-344	26	344	multi-exon	FALSE	canonical	0	0	junction_1	0	4	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCCAGATGGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	122580256	122574865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_122575625_122580001
72356	chr2	+	1120	2	ISM	ENSMUSG00000094786.2	ENSMUST00000108947.3	1209	4	7695	2135	-2560	-1533	internal_fragment	FALSE	canonical	3	249	junction_1	0	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATGAAGAAAGTTTAACGT	NA	False	NA	NA	False	NA	NA	NA	177197802	177199129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_177198829_177199035
72357	chr16	-	1786	9	FSM	ENSMUSG00000022805.18	ENSMUST00000114740.3	2529	9	22	721	22	-721	multi-exon	FALSE	canonical	0	0	junction_4	3.3166247903554	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCCAACTATAAGACATTT	NA	False	NA	NA	False	NA	NA	NA	38162152	38143263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38144022_38144498_38144657_38148569_38148748_38152529_38152712_38153115_38153173_38154103_38154188_38155865_38156024_38156705_38156783_38162018
72358	chr3	-	1301	2	ISM	ENSMUSG00000048652.13	ENSMUST00000124931.8	905	4	19655	-878	19655	-19	3prime_fragment	FALSE	canonical	1	1	junction_1	0	3	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACATCATTTCAGTTC	NA	False	NA	NA	False	NA	NA	NA	146368510	146350968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_146352185_146368425
72359	chr18	+	1734	8	FSM	ENSMUSG00000054477.17	ENSMUST00000211323.3	1725	8	309	-318	309	-2	multi-exon	FALSE	canonical	2	15	junction_3	2.55550625999976	12	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACATTTGTTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	45693529	45818947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_45693692_45694287_45694384_45725072_45725492_45788264_45788407_45803284_45803396_45810003_45810132_45816137_45816208_45818341
72360	chr19	-	628	6	NNC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	424.471718728115	24	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAAGGTATATGCTCAT	5841	False	NA	NA	False	NA	NA	NA	46327080	46318989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46319274_46319358_46319420_46319490_46319518_46321056_46321141_46326751_46326851_46327007
72361	chr19	-	670	4	NNC	ENSMUSG00000025208.10	novel	1398	3	NA	NA	6	390	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	230.904020464492	8	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAGAGTCTGGAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	44994875	44993860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44994214_44994342_44994380_44994501_44994609_44994702
72362	chr17	+	435	4	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	26	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	2262.88709395763	235	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAAAGTTTTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	6697536	6703687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6697638_6699278_6699321_6702406_6702505_6703493
72363	chr1	-	928	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12822	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	16.739839372653	38	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAACTGGATGTCAGCTC	9941	False	NA	NA	False	NA	NA	NA	65149451	65144445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_65144910_65148620_65148736_65149035_65149124_65149190
72364	chr3	-	733	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	80	36	80	-36	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCCTTGATTAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	89325610	89322814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89323271_89323580_89323709_89325461
72365	chr9	+	1031	2	Antisense	novelGene_ENSMUSG00000003308.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	9	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAATAAAAATAAAACATAAA	7704	False	NA	NA	False	NA	NA	NA	21144463	21146050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_21145385_21145940
72366	chr16	+	606	2	ISM	ENSMUSG00000097290.10	ENSMUST00000181780.9	1650	5	6461	2381	6416	951	internal_fragment	FALSE	canonical	3	39	junction_1	0	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTAGCTCCAGCTC	NA	False	NA	NA	False	NA	NA	NA	21619557	21620607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_21619587_21620030
72367	chrX	-	1771	1	Antisense	novelGene_ENSMUSG00000087368.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCCATCTCCACTATCAA	NA	False	NA	NA	False	NA	NA	NA	135666506	135664735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_135664700_135666500
72368	chr2	+	556	1	ISM	ENSMUSG00000118663.1	ENSMUST00000239507.1	4326	7	4364	8652	4364	-8652	mono-exon	FALSE	NA	NA	NA	NA	NA	9	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGAGCCATCCAGCCCC	NA	False	NA	NA	False	NA	NA	NA	122465509	122466065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_122465500_122466100
72371	chr8	+	487	2	ISM	ENSMUSG00000043243.16	ENSMUST00000124485.8	2834	13	8884	12	1705	-12	3prime_fragment	FALSE	canonical	3	7	junction_1	0	8	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTGTACCTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	72059309	72060556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_72059389_72060148
72372	chr14	-	430	2	FSM	ENSMUSG00000058351.12	ENSMUST00000049732.11	311	2	-119	0	-1	0	multi-exon	FALSE	canonical	3	152	junction_1	0	957	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATTTCAGCCATTTT	NA	False	NA	NA	False	NA	NA	NA	30850914	30846461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30846567_30850589
72373	chr6	-	454	3	Intergenic	novelGene_4125	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTCCTTTGGTCATGGT	9651	False	NA	NA	False	NA	NA	NA	20960692	20942834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_20942969_20943014_20943216_20960573
72374	chr14	-	1647	1	ISM	ENSMUSG00000022048.9	ENSMUST00000022629.9	4520	14	63410	768	63410	-768	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAGAGCATCAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	67042727	67041080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_67041100_67042700
72375	chr12	+	1574	4	FSM	ENSMUSG00000020564.18	ENSMUST00000110824.9	1675	4	93	8	-1	-8	multi-exon	FALSE	canonical	2	8	junction_2	2.35702260395516	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTCTCTAAATGCCTGTA	NA	False	NA	NA	False	NA	NA	NA	33197802	33301137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_33197915_33198431_33198501_33267710_33267816_33299849
72376	chr7	+	1713	9	ISM	ENSMUSG00000030401.17	ENSMUST00000032559.17	1990	10	3906	40	3895	-40	3prime_fragment	FALSE	canonical	3	51	junction_3	12.1037184369102	29	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGATTTACACTGTAATAA	NA	False	NA	NA	False	NA	NA	NA	19020454	19030045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_19020505_19020607_19021079_19021171_19021436_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
72379	chr11	-	1645	7	NNC	ENSMUSG00000040554.11	novel	2309	6	NA	NA	-4794	-16	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	1.63299316185545	11	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAACTTTTAAAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	71933129	71919558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_71920283_71921032_71921175_71921251_71921429_71922242_71922432_71927437_71927618_71928188_71928286_71932993
72380	chr5	-	584	2	FSM	ENSMUSG00000072694.9	ENSMUST00000061251.6	579	2	-9	4	-9	-4	multi-exon	FALSE	canonical	3	102	junction_1	0	242	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCCTGTTTTGGCGTCC	741	False	NA	NA	False	NA	NA	NA	114952015	114950857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114951267_114951840
72381	chr10	+	428	1	ISM	ENSMUSG00000071369.12	ENSMUST00000095806.10	5450	30	207402	452	17073	-452	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTGACAAAGTCCCGAGA	7260	False	NA	NA	False	NA	NA	NA	20017619	20018047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_20017600_20018000
72382	chr7	-	586	3	FSM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	-85	179	-85	-179	multi-exon	FALSE	canonical	3	110	junction_1	3.5	586	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCCTCTGGCTCTTTGG	5298	False	NA	NA	False	NA	NA	NA	127805644	127804785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127804985_127805071_127805209_127805394
72383	chr7	+	720	2	ISM	ENSMUSG00000045795.11	ENSMUST00000209044.2	1879	11	22045	3	22045	-3	3prime_fragment	FALSE	canonical	3	64	junction_1	0	33	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAGAATTACCTTAAAAAT	589	False	NA	NA	False	NA	NA	NA	81243736	81246222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_81243869_81245634
72384	chr9	+	415	2	ISM	ENSMUSG00000010044.13	ENSMUST00000193303.6	1383	10	3338	18	303	-18	3prime_fragment	TRUE	canonical	2	5	junction_1	0	2	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAGACTCATGAAACGCAA	NA	False	NA	NA	False	NA	NA	NA	107427990	107428500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_107428065_107428159
72386	chr1	-	1303	1	ISM	ENSMUSG00000026103.15	ENSMUST00000114513.9	4966	18	68414	59	4166	-59	mono-exon	FALSE	NA	NA	NA	NA	NA	10	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGATCAGGTAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	52203968	52202665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_52202700_52204000
72387	chr12	-	898	1	Intergenic	novelGene_4423	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATTAGTAAAGCCCTT	NA	False	NA	NA	False	NA	NA	NA	81516277	81515379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_81515400_81516300
72388	chr12	+	845	5	NNC	ENSMUSG00000020955.10	novel	757	6	NA	NA	-142	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	34.3974926411795	82	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTGACGTTTGAGTGA	NA	False	NA	NA	False	NA	NA	NA	51737673	51785714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_51737765_51763724_51763934_51767418_51767506_51769762_51769832_51785325
72389	chr7	+	553	4	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1684	14	178	-3	3prime_fragment	FALSE	canonical	3	1768	junction_3	20.2155056000751	117	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGGTGGCAATTTCAG	4644	False	NA	NA	False	NA	NA	NA	126812463	126813456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126812695_126812781_126812861_126813106_126813156_126813262
72390	chr2	+	990	7	NNC	ENSMUSG00000027454.11	novel	1087	7	NA	NA	56	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	164.972135694352	1	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCACAATGGGAATCTCC	2501	False	NA	NA	False	NA	NA	NA	150751592	150773191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767810_150767919_150769961_150770037_150772760
72391	chr7	-	1502	9	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51239	-47016	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.9142505005305	13	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAATGATAAAATTAAAAT	NA	False	NA	NA	False	NA	NA	NA	108986785	108925817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_108926197_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495_108940847_108986659
72392	chr1	+	657	3	NNC	ENSMUSG00000025925.15	novel	2908	5	NA	NA	67	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGTTTGTTCTATTCCAT	NA	False	NA	NA	False	NA	NA	NA	15875954	15913655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876186_15877864_15877946_15913310
72393	chr18	+	1023	3	NNC	ENSMUSG00000098702.2	novel	890	2	NA	NA	12	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	67	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTGTACTTCACTACAC	NA	False	NA	NA	False	NA	NA	NA	61859472	61868971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61860074_61867419_61867539_61868668
72394	chr5	-	231	1	Intergenic	novelGene_727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	738	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTAAAGGAGACCC	NA	False	NA	NA	False	NA	NA	NA	73637284	73637053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_73637100_73637300
72395	chr6	-	804	1	Intergenic	novelGene_4155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTAGTGTAATTGGATTC	NA	False	NA	NA	False	NA	NA	NA	47161939	47161135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_47161100_47161900
72396	chr14	-	1086	2	NNC	ENSMUSG00000097589.10	novel	637	5	NA	NA	-10454	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAATGATAGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	61930276	61866061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_61867130_61930258
72397	chr7	-	816	9	FSM	ENSMUSG00000009687.15	ENSMUST00000161684.8	1172	9	350	6	9	1	multi-exon	FALSE	canonical	0	0	junction_7	43.0718875834343	278	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGGCCTCTGTCTTCTG	2667	False	NA	NA	False	NA	NA	NA	30741556	30732156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30737245_30737354_30738462_30738520_30739607_30739683_30740821_30740883_30741514
72399	chr11	-	1081	2	Intergenic	novelGene_2450	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTTCACCATAGAGTTG	9209	False	NA	NA	False	NA	NA	NA	88842283	88841156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_88842133_88842178
72400	chr1	+	1411	4	ISM	ENSMUSG00000026436.16	ENSMUST00000027696.10	1586	6	6540	-132	-3392	132	3prime_fragment	FALSE	canonical	3	11	junction_3	3.29983164553722	4	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTAATTGGAGTCCAAGCT	6852	False	NA	NA	False	NA	NA	NA	131942153	131951531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_131942337_131945330_131946201_131947087_131947205_131951290
72401	chr17	-	789	3	FSM	ENSMUSG00000073413.10	ENSMUST00000172639.8	690	3	29	-128	20	94	multi-exon	FALSE	canonical	2	8	junction_2	7	47	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGAAATGTTCGTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	35297012	35290324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35290736_35293150_35293289_35296772
72402	chr10	-	1212	7	FSM	ENSMUSG00000050157.7	ENSMUST00000219979.2	714	7	-42	-456	19	3	multi-exon	FALSE	canonical	3	20	junction_5	8.23441288469042	80	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATTATGTCTCCTGTTAG	4935	False	NA	NA	False	NA	NA	NA	75776487	75773553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775546_75775673_75775764_75775852_75776227_75776255_75776397
72403	chr16	-	1451	11	FSM	ENSMUSG00000060459.15	ENSMUST00000115349.9	1577	11	122	4	63	-4	multi-exon	FALSE	canonical	1	1	junction_9	3.1559467676119	24	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACAGTGGTCTCCTTTCA	9849	False	NA	NA	False	NA	NA	NA	22847696	22804607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22804819_22806994_22807076_22815772_22815860_22815960_22816069_22818563_22818737_22819280_22819366_22822681_22822790_22830746_22830920_22843589_22843672_22845797_22845909_22847464
72404	chr17	+	1310	6	NNC	ENSMUSG00000024073.17	novel	4094	18	NA	NA	-5126	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	14.4443760682142	1	73	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTGGGCCTCTGAATG	NA	False	NA	NA	False	NA	NA	NA	74999224	75010066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198_75009724_75009799
72405	chr4	-	449	1	Intergenic	novelGene_2185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	2619	False	NA	NA	False	NA	NA	NA	156198222	156197773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_156197800_156198200
72409	chr11	-	645	6	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	162	4	162	-4	3prime_fragment	FALSE	canonical	3	38	junction_4	23.9115035077261	325	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGAGGTGTTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	5848620	5846640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425
72411	chr15	-	493	1	Intergenic	novelGene_3203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGAGTTTTCAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	5164664	5164171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_5164200_5164700
72413	chr18	+	472	2	Genic_Genomic	ENSMUSG00000058064.7	novel	534	1	NA	NA	-16	34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAATGCAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	15965834	15966418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_15966003_15966114
72415	chr1	+	399	1	ISM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	27573	0	3377	0	mono-exon	FALSE	NA	NA	NA	NA	NA	107	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	NA	False	NA	NA	False	NA	NA	NA	72891234	72891633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_72891200_72891600
72416	chr5	-	2023	6	Antisense	novelGene_ENSMUSG00000029155.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	32	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACTGTAAGAAAAATCAGT	NA	False	NA	NA	False	NA	NA	NA	73833648	73824197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_73824291_73825864_73826070_73826779_73827076_73828453_73828617_73829680_73829855_73832556
72417	chr16	-	1207	6	ISM	ENSMUSG00000022809.5	ENSMUST00000023504.5	2553	9	40894	692	40894	-692	3prime_fragment	FALSE	canonical	1	1	junction_5	2.48193472919817	22	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATTCTCAGGTGTTAGG	NA	False	NA	NA	False	NA	NA	NA	38074292	38069376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_38069752_38071134_38071241_38071489_38071607_38071755_38071899_38073189_38073465_38074101
72418	chr18	-	1467	1	NIC	ENSMUSG00000024539.18	novel	1497	10	NA	NA	23236	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	8	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAATAGACTATGTTGGT	NA	False	NA	NA	False	NA	NA	NA	67800058	67798591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_67798600_67800100
72419	chr7	+	836	1	NIC	ENSMUSG00000030801.11	novel	1014	3	NA	NA	1	-2738	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAATTTAAACGAATAAATG	NA	False	NA	NA	False	NA	NA	NA	127511688	127512524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127511700_127512500
72421	chr1	-	859	2	Antisense	novelGene_ENSMUSG00000026604.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	24	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGGGGAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	189583414	189581958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_189582401_189582997
72423	chr11	-	609	1	ISM	ENSMUSG00000043993.7	ENSMUST00000139014.2	1588	2	1174	1	1174	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTGCAGTATTGCTACC	NA	False	NA	NA	False	NA	NA	NA	120121237	120120628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120120600_120121200
72427	chr11	-	1663	11	NNC	ENSMUSG00000020599.14	novel	3464	10	NA	NA	58	-1593	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.031624994156	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTAATTGTATTATGAAG	NA	False	NA	NA	False	NA	NA	NA	109188834	109148420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_109148567_109148676_109149526_109150652_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109188763
72428	chr8	-	436	1	Intergenic	novelGene_1671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTGTTCCCTAACTAACC	9766	False	NA	NA	False	NA	NA	NA	79238810	79238374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_79238400_79238800
72429	chr7	-	2048	1	Antisense	novelGene_ENSMUSG00000059891.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCACAAATGTGTACCCC	NA	False	NA	NA	False	NA	NA	NA	44601905	44599857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_44599900_44601900
72430	chr6	+	1072	3	Intergenic	novelGene_4222	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	2.5	51	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTTCTAGTGGCTTCCC	NA	False	NA	NA	False	NA	NA	NA	112679529	112681633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_112679666_112679703_112679839_112680832
72433	chr2	-	1305	9	NNC	ENSMUSG00000002731.7	novel	1614	8	NA	NA	-2	-55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.8271917913444	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTGTTCTTATAATGGG	NA	False	NA	NA	False	NA	NA	NA	76478361	76460296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_76460361_76460616_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
72434	chr1	+	654	2	Antisense	novelGene_ENSMUSG00000099860.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	0	7	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGTCCAAATGAAAACA	NA	False	NA	NA	False	NA	NA	NA	119233853	119247221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_119234328_119247041
72436	chr8	+	906	1	Intergenic	novelGene_1718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTCATATACATAAAATAAA	2729	False	NA	NA	False	NA	NA	NA	106307956	106308862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_106308000_106308900
72438	chr7	-	662	1	Intergenic	novelGene_3050	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGGCTGACCTTGAACT	NA	False	NA	NA	False	NA	NA	NA	138335846	138335184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_138335200_138335800
72439	chr1	+	1099	10	Intergenic	novelGene_371	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCCTTGCGTGGGCGCAT	NA	False	NA	NA	False	NA	NA	NA	55339262	55401911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_55339347_55343658_55343784_55344833_55344882_55362807_55362883_55379633_55379758_55385533_55385611_55388038_55388093_55394804_55394897_55399770_55399921_55401641
72440	chr7	-	863	4	FSM	ENSMUSG00000036459.16	ENSMUST00000123813.9	531	4	327	-659	327	-14	multi-exon	FALSE	canonical	3	318	junction_3	7.34846922834953	70	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCTAAAAACTTGGACCAT	NA	False	NA	NA	False	NA	NA	NA	33818158	33808981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33809665_33816018_33816088_33816736_33816789_33818099
72441	chr10	+	607	3	Antisense	novelGene_ENSMUSG00000037710.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCGGCAAGCTGGGAGCG	NA	False	NA	NA	False	NA	NA	NA	71166551	71180693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_71166944_71172174_71172250_71180553
72442	chr9	+	521	1	Intergenic	novelGene_1151	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCAAGGGGGCCTTTGGG	8597	False	NA	NA	False	NA	NA	NA	102567896	102568417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_102567900_102568400
72443	chr5	-	827	5	NIC	ENSMUSG00000072591.11	novel	2429	6	NA	NA	4	-8	intron_retention	FALSE	canonical	0	0	junction_1	4.96865172858795	32	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTCTGGCAAGTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	128677714	128656177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_128656350_128659778_128660052_128661227_128661361_128662335_128662471_128677600
72445	chr18	-	935	4	Antisense	novelGene_ENSMUSG00000102496.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGCCGGGAGCCGGCGG	NA	False	NA	NA	False	NA	NA	NA	35711358	35686464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_35686522_35687478_35687514_35689667_35689760_35710607
72446	chr11	+	685	5	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	509	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	516.404395798487	26	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	NA	False	NA	NA	NA	69542463	69544123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69542550_69542803_69542900_69543035_69543134_69543429_69543768_69544056
72447	chr17	+	673	2	FSM	ENSMUSG00000093622.2	ENSMUST00000175668.2	385	2	-148	-140	-148	140	multi-exon	FALSE	canonical	3	64	junction_1	0	393	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTGGTCTATCTTTTTT	132	False	NA	NA	False	NA	NA	NA	71141510	71143179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_71141798_71142793
72448	chr14	-	2376	12	ISM	ENSMUSG00000022098.11	ENSMUST00000022693.9	3684	20	25433	5	1299	-3	3prime_fragment	FALSE	canonical	1	1	junction_3	1.77680184415382	3	42	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAATATCCTGTGCCAGAT	NA	False	NA	NA	False	NA	NA	NA	70732195	70712002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70712690_70715292_70715544_70716984_70717199_70717593_70717722_70723586_70723713_70727459_70727641_70727986_70728148_70728790_70728917_70729515_70729712_70729844_70729991_70730218_70730336_70732152
72449	chr6	+	797	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	-14	312	-14	-312	multi-exon	FALSE	canonical	3	441	junction_2	10.5	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACTTGGGGTATCAGTAG	NA	False	NA	NA	False	NA	NA	NA	113581718	113593600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113581858_113592736_113592820_113593025
72451	chr9	+	1149	3	Antisense	novelGene_ENSMUSG00000032353.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGGACCATGATGCTCC	NA	False	NA	NA	False	NA	NA	NA	89581278	89586966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_89582033_89584824_89585066_89586812
72452	chr15	+	1706	1	Antisense	novelGene_ENSMUSG00000053137.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCCCATCATCTCTTCC	NA	False	NA	NA	False	NA	NA	NA	89030869	89032575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_89030900_89032600
72453	chr13	+	545	4	NNC	ENSMUSG00000042043.7	novel	559	4	NA	NA	-4603	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	585.484414822461	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGTTTTATACTTTAC	NA	False	NA	NA	False	NA	NA	NA	94968887	94979412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_94968974_94969939_94970057_94973615_94973703_94979157
72454	chr7	+	446	3	NNC	ENSMUSG00000040824.4	novel	1420	3	NA	NA	-29	-821	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1624.5	7	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTTATGTTTTCCAGT	NA	False	NA	NA	False	NA	NA	NA	18883754	18886646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_18883820_18885142_18885306_18886428
72455	chr2	-	993	2	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	11151	9	11151	0	3prime_fragment	FALSE	canonical	2	16	junction_1	0	44	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	5899	False	NA	NA	False	NA	NA	NA	120131707	120130446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_120131110_120131377
72456	chr5	-	1398	5	ISM	ENSMUSG00000039252.12	ENSMUST00000199942.5	6273	8	6069	4345	6069	-4345	3prime_fragment	FALSE	canonical	3	38	junction_2	5.5	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGGCTCAGAGCTCTGAA	NA	False	NA	NA	False	NA	NA	NA	52717576	52695203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_52696123_52703794_52703960_52711744_52711915_52713003_52713076_52717504
72458	chr11	-	296	1	Intergenic	novelGene_2380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTCTGTTGGGTATTTTC	4908	False	NA	NA	False	NA	NA	NA	62433550	62433254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_62433300_62433600
72459	chr2	-	774	1	Intergenic	novelGene_2856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTCCTTTTAAAAAATTT	NA	False	NA	NA	False	NA	NA	NA	177692820	177692046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_177692000_177692800
72460	chrX	-	520	2	NNC	ENSMUSG00000063018.7	novel	540	2	NA	NA	295	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	10	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	NA	False	NA	NA	NA	7288932	7278341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7278772_7288842
72462	chr7	+	946	7	FSM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	36	0	-24	0	multi-exon	FALSE	canonical	3	231	junction_5	88.8144132446981	779	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30008177	30013729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
72463	chr5	+	720	3	Intergenic	novelGene_819	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCTGCCTGCTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	113482865	113484314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_113482910_113483355_113483478_113483760
72464	chr15	-	537	1	FSM	ENSMUSG00000003360.16	ENSMUST00000228973.2	889	1	176	176	140	-176	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCTACAGAGAACTGGG	7170	False	NA	NA	False	NA	NA	NA	98560599	98560062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98560100_98560600
72465	chr5	-	1114	7	Antisense	novelGene_ENSMUSG00000029466.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	52	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGGAGACGGCGCCGG	NA	False	NA	NA	False	NA	NA	NA	122576392	122560544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_122560742_122566193_122566379_122567546_122567669_122570803_122570912_122571442_122571600_122573580_122573722_122576188
72466	chr3	-	986	6	ISM	ENSMUSG00000008730.18	ENSMUST00000137078.8	3546	16	38085	121	-2411	-121	3prime_fragment	FALSE	canonical	3	80	junction_2	8.18290901819151	3	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCAACCTTAGCCAGGTA	NA	False	NA	NA	False	NA	NA	NA	103660792	103652592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_103652707_103654110_103654353_103656594_103656802_103657518_103657702_103658091_103658235_103660695
72468	chr3	-	419	2	FSM	ENSMUSG00000027863.9	ENSMUST00000156103.2	968	2	481	68	481	-68	multi-exon	FALSE	canonical	2	8	junction_1	0	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCCGCCCCCTAATTAAG	NA	False	NA	NA	False	NA	NA	NA	101187224	101183291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_101183590_101187103
72469	chr14	-	667	7	Antisense	novelGene_ENSMUSG00000021932.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	25	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGAGAAGGCCCCCTGCA	NA	False	NA	NA	False	NA	NA	NA	62609960	62587863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_62587924_62590969_62591080_62597910_62597972_62598770_62598882_62601476_62601601_62607952_62608000_62609806
72470	chr13	+	731	1	FSM	ENSMUSG00000049539.4	ENSMUST00000055770.4	741	1	2	8	2	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	271	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAGAGCCACCAACATAAC	NA	False	NA	NA	False	NA	NA	NA	23947650	23948381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_23947600_23948400
72471	chr2	+	1465	1	ISM	ENSMUSG00000019188.17	ENSMUST00000148156.2	2769	3	12488	3	-9865	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCACTGGAGGTGTGTTT	5635	False	NA	NA	False	NA	NA	NA	152523893	152525358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_152523900_152525400
72473	chr3	-	699	1	Intergenic	novelGene_3188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTTTGAGACATTACATTC	NA	False	NA	NA	False	NA	NA	NA	131073303	131072604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_131072600_131073300
72474	chr11	+	984	3	Antisense	novelGene_ENSMUSG00000049680.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_2	1.5	6	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCCTGCTATCTTATCA	NA	False	NA	NA	False	NA	NA	NA	5667591	5671374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_5667789_5668035_5668211_5670762
72476	chr11	+	572	1	ISM	ENSMUSG00000020349.5	ENSMUST00000020608.3	7102	7	23356	5170	3294	2916	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGTCAGGTTTGAATT	8510	False	NA	NA	False	NA	NA	NA	52012863	52013435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_52012900_52013400
72477	chr4	-	2246	1	Intergenic	novelGene_1899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	102	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACAGTCAACAGTGTCAA	NA	False	NA	NA	False	NA	NA	NA	85139174	85136928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_85136900_85139200
72478	chr14	+	660	3	FSM	ENSMUSG00000054763.10	ENSMUST00000067990.8	618	3	-42	0	-42	0	multi-exon	FALSE	canonical	3	33	junction_1	3	297	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCGTTTCAAATTCACC	NA	False	NA	NA	False	NA	NA	NA	63284397	63286059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63284500_63284892_63285068_63285676
72479	chr11	+	705	1	Intergenic	novelGene_2435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTACCAGATCTTAAGG	NA	False	NA	NA	False	NA	NA	NA	84761745	84762450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_84761700_84762400
72480	chr11	-	600	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108579.8	667	4	41	26	-2	-24	multi-exon	FALSE	canonical	3	142	junction_2	177.768263634304	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATAATTAAAAAAGATTC	NA	False	NA	NA	False	NA	NA	NA	70128689	70126057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70126295_70126849_70127038_70128356_70128452_70128609
72481	chr8	+	626	1	Intergenic	novelGene_1650	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCTCCTCTTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	67350697	67351323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_67350700_67351300
72482	chr6	-	980	1	Antisense	novelGene_ENSMUSG00000030102.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATCAGGGTCCACCTGGG	NA	False	NA	NA	False	NA	NA	NA	108346966	108345986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_108346000_108347000
72483	chr9	+	792	6	ISM	ENSMUSG00000035284.11	ENSMUST00000077879.7	11527	85	135450	31	30	-27	3prime_fragment	FALSE	canonical	3	13	junction_1	2.93938769133981	10	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTCATTAATATTAAAAT	2689	False	NA	NA	False	NA	NA	NA	67883127	67902889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_67883188_67889786_67889902_67895244_67895334_67900219_67900344_67902141_67902226_67902569
72484	chr11	+	366	2	Antisense	novelGene_ENSMUSG00000059534.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGCGTAGAACCCAATGT	NA	False	NA	NA	False	NA	NA	NA	4651988	4654336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_4652173_4654154
72487	chrX	-	700	4	FSM	ENSMUSG00000090110.9	ENSMUST00000149863.3	507	4	-13	-180	-13	0	multi-exon	FALSE	canonical	3	61	junction_2	9.20144916122817	168	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	NA	NA	NA	74460203	74448451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_74448825_74453151_74453220_74459620_74459820_74460143
72488	chr7	-	615	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	884	-1	intron_retention	FALSE	canonical	3	10	junction_4	35.9513560244951	308	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCATGGCCTCTGTCTTC	7744	False	NA	NA	False	NA	NA	NA	30736479	30732158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736335
72489	chr1	-	1380	12	ISM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	-2	4236	-2	3179	5prime_fragment	FALSE	canonical	3	26	junction_11	29.564888713271	5	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAGTTGTTAACTTAAAG	NA	False	NA	NA	False	NA	NA	NA	183078802	183062153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
72490	chr12	+	409	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	38	-2	-3	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	2333	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	NA	False	NA	NA	NA	113115669	113117499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
72491	chr6	+	892	1	ISM	ENSMUSG00000030329.12	ENSMUST00000032479.11	2250	6	5511	0	2543	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	124979167	124980059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_124979200_124980100
72492	chr19	-	2462	1	NIC	ENSMUSG00000118491.2	novel	3221	13	NA	NA	29998	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTCCACCTTAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	12743492	12741030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_12741000_12743500
72493	chr10	+	1954	1	NIC	ENSMUSG00000000732.10	novel	2814	7	NA	NA	4233	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTCTGGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	77913405	77915359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_77913400_77915400
72494	chr2	+	1077	1	Intergenic	novelGene_2696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTAATTATATGTAAGT	NA	False	NA	NA	False	NA	NA	NA	119766148	119767225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_119766100_119767200
72495	chr13	-	465	3	FSM	ENSMUSG00000042655.6	ENSMUST00000043061.5	1310	3	285	560	-189	-4	multi-exon	FALSE	canonical	3	12	junction_1	1	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTTATTTGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	105000116	104982350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_104982572_104994796_104994955_105000030
72496	chr1	-	877	1	FSM	ENSMUSG00000034486.9	ENSMUST00000187633.2	1220	1	337	6	337	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	29	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGCAAGGAAAAACTATA	NA	False	NA	NA	False	NA	NA	NA	89856570	89855693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_89855700_89856600
72497	chrX	+	1297	2	Antisense	novelGene_ENSMUSG00000083112.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	10	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTATTATTACGTATT	NA	False	NA	NA	False	NA	NA	NA	49626257	49639653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49626314_49638412
72498	chr14	-	876	5	FSM	ENSMUSG00000022217.15	ENSMUST00000022828.9	855	5	-24	3	-24	-3	multi-exon	FALSE	canonical	3	89	junction_1	3.69966214673719	204	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAACTATGTATTTATTG	NA	False	NA	NA	False	NA	NA	NA	55822783	55818981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368
72499	chr7	-	607	4	NNC	ENSMUSG00000030595.16	novel	1243	6	NA	NA	47	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	254.087036706366	6	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGACTGACCCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	28465892	28458467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28458630_28459251_28459509_28461026_28461182_28465859
72501	chr14	-	710	4	Fusion	ENSMUSG00000115691.2_ENSMUSG00000090459.2	novel	391	2	NA	NA	-10422	9	multi-exon	FALSE	canonical	3	25	junction_2	11.2249721603218	257	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAAGTTTTTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	32027353	32014871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_32015223_32016561_32016674_32016885_32016987_32027207
72502	chr17	-	751	4	FSM	ENSMUSG00000079710.11	ENSMUST00000179539.9	752	4	26	-25	13	-4	multi-exon	TRUE	canonical	3	14	junction_1	7.25718035235908	84	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATCTGTGAGCCTCGTG	8891	False	NA	NA	False	NA	NA	NA	15230418	15216052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15216212_15219403_15219560_15222241_15222449_15230189
72503	chr9	-	381	3	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	63	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4537.5	80	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAATCTGTGTTGGTCA	7163	False	NA	NA	False	NA	NA	NA	78388943	78385741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386033_78387903_78387971_78388920
72504	chr19	+	1530	2	NNC	ENSMUSG00000033478.6	novel	5951	17	NA	NA	-1502	-28821	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	6	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTCACCGAGAGACGAG	NA	False	NA	NA	False	NA	NA	NA	57347609	57349197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_57347858_57347915
72505	chr15	+	1345	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	599	111	599	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTCGCGCACCCTACCC	1746	False	NA	NA	False	NA	NA	NA	78913248	78914593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78913200_78914600
72506	chr12	-	305	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221422.2	861	3	546	10	219	2	multi-exon	FALSE	canonical	3	1653	junction_2	166	10047	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTTAAAGTGTGATTCT	NA	False	NA	NA	False	NA	NA	NA	101941967	101934358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_101934470_101935751_101935897_101941918
72507	chr12	-	689	1	Antisense	novelGene_ENSMUSG00000021268.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGGCAGCCAGAGGGAAC	9115	False	NA	NA	False	NA	NA	NA	109536787	109536098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_109536100_109536800
72509	chr16	+	1726	1	FSM	ENSMUSG00000071637.6	ENSMUST00000096232.6	3746	1	2645	-625	1515	625	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAGCACTCAGGCGGCA	2557	False	NA	NA	False	NA	NA	NA	15707794	15709520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_15707800_15709500
72510	SIRV7	-	622	2	ISM	SIRV7A	SIRV708	889	6	0	58650	0	-58650	5prime_fragment	FALSE	canonical	3	2098	junction_1	0	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTGGTAGCTCTTATCG	NA	False	NA	NA	False	NA	NA	NA	147957	114687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV7_-_114961_147608
72511	chr8	+	1539	2	FSM	ENSMUSG00000049184.7	ENSMUST00000078058.5	1795	2	234	22	234	-22	multi-exon	FALSE	canonical	3	8	junction_1	0	11	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACTGGTTTATATGT	NA	False	NA	NA	False	NA	NA	NA	33876586	33907473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_33877237_33906584
72513	chr4	-	1033	7	FSM	ENSMUSG00000028497.13	ENSMUST00000030221.3	2089	7	21	1035	10	-1035	multi-exon	TRUE	canonical	2	3	junction_1	2.26691175145591	21	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTGAGAAACCAATTGATT	NA	False	NA	NA	False	NA	NA	NA	88357142	88332201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_88332584_88337935_88338062_88341227_88341335_88344972_88345086_88353175_88353304_88355696_88355801_88357069
72514	chr8	-	935	5	NNC	ENSMUSG00000003575.14	novel	870	4	NA	NA	-18	533	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	29.1247317584214	54	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTATATAGTAACTGCAC	5195	False	NA	NA	False	NA	NA	NA	70892247	70856965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70857419_70857908_70857971_70858727_70858866_70861544_70861662_70892082
72515	chr9	+	914	1	Genic_Genomic	ENSMUSG00000034252.15	novel	NA	NA	NA	NA	2323	328	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTGAATTTAATATAAGGA	NA	False	NA	NA	False	NA	NA	NA	80051649	80052563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_80051600_80052600
72516	chr9	+	311	1	Intergenic	novelGene_1120	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGATTTGCGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	80053492	80053803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_80053500_80053800
72517	chr14	-	559	2	Intergenic	novelGene_640	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTTCTTCTTAGACG	NA	False	NA	NA	False	NA	NA	NA	111522866	111520980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_111521437_111522763
72518	chr11	-	864	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107081.8	818	3	-56	10	-56	-10	multi-exon	FALSE	canonical	2	9	junction_2	3.5	138	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAGTGCTAAATTTGCTT	8182	False	NA	NA	False	NA	NA	NA	102470343	102467233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102467624_102469575_102469722_102470015
72521	chr3	+	848	2	NNC	ENSMUSG00000027668.14	novel	344	3	NA	NA	521	-76	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTACAAAACATTTTTATAA	NA	False	NA	NA	False	NA	NA	NA	32617577	32633312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32617643_32632529
72522	chr2	+	421	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	252.149137416728	3116	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	NA	False	NA	NA	NA	135488443	135493987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493478_135493766
72523	chr2	+	1164	10	FSM	ENSMUSG00000059540.16	ENSMUST00000103042.10	1183	10	8	11	8	-2	multi-exon	FALSE	canonical	3	30	junction_1	6.17841723309237	54	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGGCTTCAGCTGGGT	2300	False	NA	NA	False	NA	NA	NA	181322110	181329853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181322269_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
72525	chr2	+	1053	3	Antisense	novelGene_ENSMUSG00000027217.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1	17	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTGGGTTACAGTGTA	NA	False	NA	NA	False	NA	NA	NA	93083397	93089639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_93083437_93083539_93083679_93088764
72528	chr14	+	1557	7	ISM	ENSMUSG00000022012.10	ENSMUST00000022589.9	3142	19	458718	-347	42625	-6	3prime_fragment	FALSE	canonical	1	1	junction_2	1.80277563773199	6	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACCATATCGATTTTGTG	NA	False	NA	NA	False	NA	NA	NA	77852920	77959194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_77852997_77875055_77875241_77902058_77902167_77906176_77906234_77936634_77936738_77945039_77945126_77958252
72529	chr10	+	983	4	NIC	ENSMUSG00000035722.16	novel	6590	46	NA	NA	16215	-4	intron_retention	FALSE	canonical	3	44	junction_1	10.7806410858642	76	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGAATGAGGCCACGGC	8768	False	NA	NA	False	NA	NA	NA	79849663	79851398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79849815_79850062_79850395_79850780_79851022_79851139
72530	chr10	+	1718	8	FSM	ENSMUSG00000019872.14	ENSMUST00000020022.8	1961	8	229	14	35	-14	multi-exon	FALSE	canonical	1	1	junction_1	1.57790871674104	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGATGCCATGGAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	57670698	57687912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_57670881_57677006_57677221_57678515_57678661_57681662_57681760_57683450_57683621_57683972_57684154_57685141_57685267_57687308
72531	chr8	+	558	2	NNC	ENSMUSG00000054247.7	novel	834	2	NA	NA	1080	6263	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	22	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACAGGTGTGTGCAAT	NA	False	NA	NA	False	NA	NA	NA	35434666	35441144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_35434900_35440819
72532	chr17	-	855	5	FSM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	-16	3	-16	-2	multi-exon	FALSE	canonical	3	256	junction_1	22.6770809408971	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTCGGGTGTTGGTGA	7746	False	NA	NA	False	NA	NA	NA	26087754	26082674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087518_26087598
72533	chr8	-	2381	1	ISM	ENSMUSG00000034799.17	ENSMUST00000030170.15	10255	44	42608	2352	12248	2285	mono-exon	FALSE	NA	NA	NA	NA	NA	3	50	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAGAAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	72081793	72079412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_72079400_72081800
72534	chr9	+	1050	2	FSM	ENSMUSG00000001014.7	ENSMUST00000215077.2	1028	2	-22	0	-22	0	multi-exon	FALSE	canonical	2	5	junction_1	0	31	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGCCTTACGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	20940727	20941890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20941120_20941232
72537	chr11	+	708	4	NNC	ENSMUSG00000020812.19	novel	1083	5	NA	NA	0	-285	intron_retention	FALSE	non_canonical	0	0	junction_1	82.8130424510536	1	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGTTGGCTCATCGTAAG	NA	False	NA	NA	False	NA	NA	NA	116562494	116565128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_116562583_116563001_116563182_116563489_116563565_116564763
72538	chr11	-	885	6	NNC	ENSMUSG00000020530.15	novel	386	4	NA	NA	-1	2748	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	259.977999069152	31	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAACGTTTTGTCTGGGGA	NA	False	NA	NA	False	NA	NA	NA	84761565	84748796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_84748950_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
72539	chr8	+	563	3	FSM	ENSMUSG00000033938.6	ENSMUST00000036996.6	623	3	60	0	-27	0	multi-exon	FALSE	canonical	3	2087	junction_2	87.5	8439	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTGTGCTACTTCAA	NA	False	NA	NA	False	NA	NA	NA	84293359	84298255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_84293560_84297458_84297628_84298061
72541	chr19	+	692	3	FSM	ENSMUSG00000118100.2	ENSMUST00000235986.2	582	3	-12	-98	-12	-6	multi-exon	FALSE	canonical	1	1	junction_2	6	56	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTTGCAATGGCCATGGT	NA	False	NA	NA	False	NA	NA	NA	9877041	9880019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9877385_9878231_9878442_9879880
72543	chr13	+	829	2	Intergenic	novelGene_1352	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	31	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGACCCTCTTGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	41894784	41901160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_41894875_41900421
72544	chr9	+	1129	7	FSM	ENSMUSG00000001943.9	ENSMUST00000002008.7	1166	7	24	13	-12	-13	multi-exon	FALSE	canonical	0	0	junction_1	3.13138237134266	36	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAACCATGCCACCTCGTT	NA	False	NA	NA	False	NA	NA	NA	37450574	37455484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_37450735_37451164_37451323_37451589_37451798_37452622_37452782_37453650_37453771_37453884_37454030_37455305
72545	chr15	+	1048	1	Intergenic	novelGene_3286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAATAAATAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	41299609	41300657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_41299600_41300700
72546	chr17	-	745	2	Intergenic	novelGene_257	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAGAAGAGGGCATTACA	NA	False	NA	NA	False	NA	NA	NA	47403148	47402360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_47402505_47402547
72547	chr19	-	877	5	ISM	ENSMUSG00000042401.9	ENSMUST00000048630.8	2618	15	133735	497	-10094	0	3prime_fragment	FALSE	canonical	3	50	junction_1	10.2347447452294	75	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	42286487	42271970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092
72548	chrX	+	1052	3	Intergenic	novelGene_4077	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_2	7.5	34	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGAATCGTGTTTTAGTC	NA	False	NA	NA	False	NA	NA	NA	148930476	148935549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_148930725_148930848_148930931_148934827
72550	chr7	-	987	7	NNC	ENSMUSG00000005575.17	novel	1472	6	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	840.033679880357	408	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	8452	False	NA	NA	False	NA	NA	NA	12772191	12769164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547_12771627_12772102
72551	chr14	-	850	5	ISM	ENSMUSG00000042104.19	ENSMUST00000131424.8	1170	6	3730	167	3730	-167	3prime_fragment	FALSE	canonical	1	2	junction_4	0.707106781186548	3	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTCCAGCTTCAAGTACA	NA	False	NA	NA	False	NA	NA	NA	119240399	119223996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_119224326_119232357_119232485_119235508_119235626_119239182_119239298_119240237
72555	chr4	+	815	1	Intergenic	novelGene_1834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGAATATGCTTAGCCC	NA	False	NA	NA	False	NA	NA	NA	41436418	41437233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41436400_41437200
72558	chr5	+	347	3	ISM	ENSMUSG00000029522.13	ENSMUST00000031495.11	557	4	4650	21	4644	5	3prime_fragment	FALSE	canonical	3	2118	junction_2	25	12	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACCTGCTGTCAGAGCCT	3328	False	NA	NA	False	NA	NA	NA	115608974	115612760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115609001_115610051_115610180_115612567
72559	chr10	+	811	3	NNC	ENSMUSG00000000903.4	novel	729	2	NA	NA	-2192	-9	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0.5	55	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGTGGAGGTTGGGATTT	NA	False	NA	NA	False	NA	NA	NA	75776698	75785482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75776873_75778993_75779125_75784976
72560	chr11	-	246	1	Intergenic	novelGene_2459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAACAAAAACAAAACAT	NA	False	NA	NA	False	NA	NA	NA	95781653	95781407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_95781400_95781700
72561	chr17	-	807	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-3	2456	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_4	9.63068014212911	57	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	NA	False	NA	NA	NA	69584206	69579900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_69580313_69582162_69582295_69582786_69582902_69583120_69583191_69584128
72563	chr2	-	655	4	NNC	ENSMUSG00000040591.19	novel	418	4	NA	NA	10	-24887	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	57.4011227145331	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAACTCACTCTGTAGAC	NA	False	NA	NA	False	NA	NA	NA	91275039	91159642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91159938_91214073_91214205_91252210_91252314_91274913
72565	chr9	+	707	5	NNC	ENSMUSG00000032216.16	novel	660	8	NA	NA	9	594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1277.39118910379	24	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTGTGTGTGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	72569780	72580024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72570393_72570535_72577237_72577399_72578511_72578586_72579808
72566	chr4	+	1679	12	NNC	ENSMUSG00000039577.18	novel	4465	29	NA	NA	-6129	20739	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	16.4155741410456	1	98	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTGATGCTGGTAAGT	NA	False	NA	NA	False	NA	NA	NA	152581241	152623453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152581279_152582633_152582699_152583388_152583556_152587347_152587457_152590817_152591000_152591813_152591945_152602549_152602733_152608698_152608872_152621639_152621757_152622231_152622381_152622476_152622669_152623279
72567	chr9	-	995	1	ISM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	44393	295	30741	-292	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCTTGTGAAAAGTAACT	NA	False	NA	NA	False	NA	NA	NA	75474192	75473197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_75473200_75474200
72568	chr6	+	691	2	Genic_Genomic	ENSMUSG00000080242.6	novel	465	1	NA	NA	-111	550	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	37782909	37784035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_37783240_37783674
72570	chr5	+	1114	1	Antisense	novelGene_ENSMUSG00000029657.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGCCTTCGAGAAAGATTC	NA	False	NA	NA	False	NA	NA	NA	149558706	149559820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_149558700_149559800
72571	chr9	-	1231	3	Antisense	novelGene_ENSMUSG00000032611.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGGACCCAGGGTCACG	159	False	NA	NA	False	NA	NA	NA	108274951	108270259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108270837_108272490_108272584_108274390
72572	chr17	-	597	4	NNC	ENSMUSG00000092203.8	novel	747	4	NA	NA	125	-22	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	74.9058668522626	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCAATAAAATACTTTTAAA	6169	False	NA	NA	False	NA	NA	NA	35171285	35169240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35169452_35169673_35169824_35170860_35170902_35171090
72573	chr6	+	592	2	ISM	ENSMUSG00000030037.10	ENSMUST00000113938.5	695	3	213	0	133	0	3prime_fragment	FALSE	canonical	3	747	junction_1	0	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7596	False	NA	NA	False	NA	NA	NA	83086233	83086920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83086408_83086502
72576	chr6	+	782	4	NNC	ENSMUSG00000042213.18	novel	374	4	NA	NA	121	-19971	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	3.09120616516523	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGACCGATAAGTACTAGAAA	NA	False	NA	NA	False	NA	NA	NA	116241346	116262860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_116241707_116250533_116250834_116261700_116261777_116262814
72577	chr6	-	1111	10	NNC	ENSMUSG00000030353.16	novel	1909	11	NA	NA	4678	-52	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	34.3514874693662	1	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTGATCTTGCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	128247862	128205195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220465_128223279_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830
72578	chr11	+	521	2	FSM	ENSMUSG00000038057.5	ENSMUST00000040806.5	581	2	55	5	55	-5	multi-exon	FALSE	canonical	2	5	junction_1	0	50	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATGAGAGTGGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	76108488	76109487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76108575_76109052
72581	chr19	-	1581	1	NIC	ENSMUSG00000118491.2	novel	3221	13	NA	NA	17536	-13350	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTGTTTTCAGGGAAA	9512	False	NA	NA	False	NA	NA	NA	12755954	12754373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_12754400_12756000
72582	chr1	+	628	5	FSM	ENSMUSG00000026087.12	ENSMUST00000193673.6	662	5	8	26	-3	0	multi-exon	FALSE	canonical	3	190	junction_1	367.71796257458	276	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGCTGATGGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	37929620	37937419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_37929666_37933019_37933097_37934410_37934492_37936768_37936916_37937141
72583	chr9	-	1193	3	FSM	ENSMUSG00000037190.13	ENSMUST00000041459.9	1786	3	19	574	19	0	multi-exon	FALSE	canonical	3	104	junction_2	5	35	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACCTGTCGGGAGGAG	NA	False	NA	NA	False	NA	NA	NA	107419045	107416779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107417585_107418201_107418240_107418695
72585	chr5	+	1690	9	NNC	ENSMUSG00000050248.12	novel	2796	12	NA	NA	4	-15400	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	11.0227038425243	7	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCACAGCAGTATGAC	8846	False	NA	NA	False	NA	NA	NA	37495846	37529708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37529263
72587	chr5	-	1102	9	ISM	ENSMUSG00000043323.18	ENSMUST00000198834.2	2571	14	7408	8699	7408	-8699	internal_fragment	FALSE	canonical	3	98	junction_6	23.710493457539	7	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGGACCCTCAGCTCATC	NA	False	NA	NA	False	NA	NA	NA	110527420	110519464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110519490_110522255_110522386_110523872_110523945_110524118_110524149_110524267_110524337_110525222_110525274_110525903_110526122_110526759_110526981_110527134
72588	chr5	-	1404	1	Intergenic	novelGene_890	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGACCTGGTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	145101779	145100375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_145100400_145101800
72589	chr11	+	1093	7	ISM	ENSMUSG00000032807.6	ENSMUST00000036424.3	2431	15	8870	1	8870	-1	3prime_fragment	FALSE	canonical	0	0	junction_1	13.9522996909709	98	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGGTCTGAGAACGTGGG	NA	False	NA	NA	False	NA	NA	NA	69056684	69060617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69056881_69057055_69057143_69057599_69057770_69058181_69058304_69059603_69059705_69060043_69060215_69060371
72590	chr7	+	1419	1	Intergenic	novelGene_2919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGGCCGCCCCGGAGGCT	3774	False	NA	NA	False	NA	NA	NA	29819881	29821300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_29819900_29821300
72591	chr18	+	1251	4	NIC	ENSMUSG00000024581.14	novel	826	8	NA	NA	15	60	intron_retention	FALSE	canonical	3	5	junction_1	107.263952731361	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTGTATCTACTACCT	NA	False	NA	NA	False	NA	NA	NA	63110994	63130177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_63111096_63124871_63124951_63127382_63128164_63129887
72592	chr8	-	631	4	NNC	ENSMUSG00000031819.14	novel	1863	7	NA	NA	-5621	-7915	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCACAGCGGGAACGCCCG	NA	False	NA	NA	False	NA	NA	NA	121400933	121395300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_121395337_121399389_121399632_121399959_121400087_121400707
72593	chr12	+	735	3	Intergenic	novelGene_4439	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	11	junction_2	1	42	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGACTTTGAAGATAATG	NA	False	NA	NA	False	NA	NA	NA	87346931	87348061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_87347023_87347116_87347291_87347591
72594	chr15	-	1469	2	ISM	ENSMUSG00000033697.17	ENSMUST00000177011.2	4145	6	80907	1280	-11619	-1280	3prime_fragment	FALSE	canonical	3	56	junction_1	0	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTCCTCTGCCTTGTAG	4626	False	NA	NA	False	NA	NA	NA	76621422	76618936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76619639_76620655
72595	chr6	-	1354	11	ISM	ENSMUSG00000017978.19	ENSMUST00000125350.8	2735	23	160168	58259	-71337	-58254	internal_fragment	FALSE	canonical	0	0	junction_3	1.22065556157337	1	30	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATTAGTTGATGCTAAAA	NA	False	NA	NA	False	NA	NA	NA	23427255	23321765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_23321853_23323278_23323435_23329018_23329161_23344205_23344363_23355822_23355927_23382879_23383004_23385465_23385530_23390383_23390486_23410740_23410929_23412946_23413084_23427162
72596	chr5	-	1401	5	NNC	ENSMUSG00000029603.16	novel	2961	8	NA	NA	-512	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.8697247792537	2	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGTGGGTGGAGAAATAA	NA	False	NA	NA	False	NA	NA	NA	120821492	120818302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_120819233_120820413_120820531_120820644_120820804_120821125_120821188_120821359
72597	chr3	-	577	2	FSM	ENSMUSG00000037910.3	ENSMUST00000036023.3	593	2	16	0	16	0	multi-exon	FALSE	canonical	3	53	junction_1	0	221	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTTAGATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	48563521	48560166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_48560355_48563132
72598	chr2	-	1892	3	FSM	ENSMUSG00000050556.10	ENSMUST00000148226.3	1119	3	-659	-114	-3	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCGTGTGTGTGTGTG	7153	False	NA	NA	False	NA	NA	NA	166943749	166940713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_166941781_166942647_166942736_166943012
72599	chr8	-	1730	4	ISM	ENSMUSG00000031561.17	ENSMUST00000110346.9	2267	10	106	31043	106	1086	5prime_fragment	FALSE	canonical	2	15	junction_3	34.1207007873845	2	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTATCTGCATACCAGTG	NA	False	NA	NA	False	NA	NA	NA	49008242	48819270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_48820469_48848470_48848710_48870042_48870281_49008187
72600	chr8	+	758	1	Antisense	novelGene_ENSMUSG00000031561.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTTTGTCGCAAGAACT	NA	False	NA	NA	False	NA	NA	NA	48680737	48681495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_48680700_48681500
72601	chr12	-	773	4	ISM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	576	24	401	-24	intron_retention	FALSE	canonical	3	127	junction_1	27.9801516952444	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAATTTTGAGAGACCC	NA	False	NA	NA	False	NA	NA	NA	69629308	69624425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049
72602	chr1	+	1236	8	ISM	ENSMUSG00000042451.13	ENSMUST00000038445.13	1828	11	3525	7	3516	-7	3prime_fragment	TRUE	canonical	2	4	junction_4	1.8405855323893	14	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTATAGCATGGGGTT	NA	False	NA	NA	False	NA	NA	NA	134124710	134128962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134124797_134125088_134125285_134125467_134125608_134126138_134126299_134127451_134127589_134127687_134127875_134128132_134128186_134128685
72603	chr19	-	1113	5	FSM	ENSMUSG00000041845.12	ENSMUST00000048197.10	1344	5	23	208	-9	0	multi-exon	FALSE	canonical	3	9	junction_1	4.02336923485777	36	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTGTCCTGACTCTTC	9171	False	NA	NA	False	NA	NA	NA	4489437	4475694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4476285_4476654_4476790_4482082_4482193_4482795_4482884_4489247
72604	chr7	-	1052	5	ISM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	639	50	639	-36	3prime_fragment	TRUE	canonical	3	75	junction_3	7.22841614740048	38	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCCCCTCATGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	44262910	44255278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858
72605	chr3	+	275	1	ISM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	133171	2157	81367	-1146	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAAGGTCCAACCTGTGTG	NA	False	NA	44	True	NA	NA	NA	145597600	145597875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_145597600_145597900
72606	chr13	+	1144	1	ISM	ENSMUSG00000007617.19	ENSMUST00000102752.10	5713	5	54819	5	51280	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTTCTAGTATATTG	NA	False	NA	NA	False	NA	NA	NA	93495821	93496965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_93495800_93497000
72608	chr7	+	579	3	Genic_Genomic	ENSMUSG00000110350.2	novel	832	1	NA	NA	-1490	-549	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAGTACAGTGGGAATCCC	NA	False	NA	NA	False	NA	NA	NA	45107402	45109175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_45107710_45107960_45108089_45109031
72609	chr15	+	1571	5	NNC	ENSMUSG00000022151.17	novel	1832	5	NA	NA	24	-65	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	61.9853813410872	1	95	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAGATGAATGGCATTTG	NA	False	NA	NA	False	NA	NA	NA	5215231	5247752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_5215250_5219062_5219287_5237856_5237932_5241479_5241612_5246630
72610	chr15	-	333	1	Intergenic	novelGene_3335	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGACTCCTCAGAAATG	NA	False	NA	NA	False	NA	NA	NA	84076327	84075994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_84076000_84076300
72612	chr7	-	399	2	Intergenic	novelGene_3059	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCCTGCTAGGAATGAG	NA	False	NA	NA	False	NA	NA	NA	144427026	144425359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_144425669_144426936
72613	chr7	-	841	10	NNC	ENSMUSG00000061028.8	novel	2151	21	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	85.1340265060675	72	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	NA	False	NA	NA	NA	19338383	19314967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19315084_19315305_19315331_19316156_19316223_19325057_19325164_19325917_19326003_19328397_19328478_19328831_19328934_19329383_19329482_19337114_19337231_19338336
72614	chr2	+	889	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	3	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	26.1576417557513	257	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	162232735	162238522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162233118_162233218_162233320_162238066_162238330_162238379
72615	chr6	+	581	3	ISM	ENSMUSG00000101191.7	ENSMUST00000187542.7	782	4	1230	60	649	-60	3prime_fragment	FALSE	canonical	2	2	junction_1	1.5	2	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCCAGCCTGGTCTACAAA	NA	False	NA	NA	False	NA	NA	NA	125459555	125461581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125459666_125460403_125460533_125461239
72616	chr1	+	2265	8	Antisense	novelGene_ENSMUSG00000048814.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTTTTTATCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	38835958	38852406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_38837307_38839733_38839879_38843316_38843482_38846120_38846281_38846916_38847039_38850792_38850907_38851623_38851722_38852293
72617	chr18	-	858	4	FSM	ENSMUSG00000024352.13	ENSMUST00000096573.4	710	4	39	-187	9	187	multi-exon	FALSE	canonical	3	181	junction_2	13.2748718344933	171	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCAGATCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	35795200	35792881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35793407_35793496_35793628_35793844_35793911_35795064
72618	chr11	-	500	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	103	8	41	-5	multi-exon	FALSE	canonical	3	718	junction_2	4	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTAAGCTTGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	70130565	70128957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70129297_70129763_70129841_70130481
72620	chr9	+	602	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	-5	-117	-5	117	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGTTTAAAAAAAAAAAAAAA	23	False	NA	NA	False	NA	NA	NA	7751720	7752322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_7751700_7752300
72621	chr7	+	1487	1	NIC	ENSMUSG00000030870.13	novel	4849	7	NA	NA	7224	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	6	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAAAATTTTTTACC	NA	False	NA	NA	False	NA	NA	NA	121675345	121676832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_121675300_121676800
72622	chr12	-	744	5	Antisense	novelGene_ENSMUSG00000042700.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACCTAAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82387863	82281241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_82281301_82312728_82312798_82314804_82314932_82358122_82358184_82387435
72624	chr6	+	699	2	Genic_Genomic	ENSMUSG00000081669.2	novel	528	1	NA	NA	-7	205	multi-exon	FALSE	canonical	0	0	junction_1	0	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAACAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	85053166	85053906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_85053292_85053332
72626	chr11	+	880	9	ISM	ENSMUSG00000020332.8	ENSMUST00000143919.2	1489	13	19851	8901	19851	-8901	internal_fragment	FALSE	canonical	0	0	junction_6	0.707106781186548	9	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTAGCGTAGTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	54281328	54308680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_54281425_54285457_54285578_54286371_54286412_54289281_54289347_54290638_54290716_54296703_54296860_54300475_54300557_54302621_54302742_54308555
72627	chrX	-	1515	2	Genic_Genomic	ENSMUSG00000082450.2	novel	1041	1	NA	NA	-1853	313	multi-exon	FALSE	canonical	2	4	junction_1	0	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTCATGTTGTTTTACTC	NA	False	NA	NA	False	NA	NA	NA	85444703	85441496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_85442910_85444601
72628	chr12	-	2163	1	ISM	ENSMUSG00000021047.8	ENSMUST00000021438.8	7154	5	118848	3402	20778	3156	mono-exon	FALSE	NA	NA	NA	NA	NA	11	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAGTTCATCATGTAGC	NA	False	NA	NA	False	NA	NA	NA	46746864	46744701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_46744700_46746900
72629	chr3	+	1446	11	NIC	ENSMUSG00000036853.6	novel	2991	12	NA	NA	61	-3094	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.0591260281974	1	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCGTATTAGTTAAGTTT	NA	False	NA	NA	False	NA	NA	NA	145823265	145843324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_145823390_145827545_145827776_145830499_145830668_145833857_145834012_145834637_145834723_145834850_145834948_145836901_145837002_145839404_145839518_145839594_145839745_145843012_145843115_145843201
72630	chr8	-	1385	5	ISM	ENSMUSG00000045333.16	ENSMUST00000165770.9	4334	6	23784	103	23168	-101	3prime_fragment	FALSE	canonical	3	14	junction_3	3.93700393700591	7	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATCGGTTTCCGTGCAA	NA	False	NA	NA	False	NA	NA	NA	88507283	88388540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_88389136_88413056_88413173_88414583_88414716_88500194_88500280_88506826
72631	chr7	-	323	3	NNC	ENSMUSG00000036751.8	novel	354	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2812	2	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	NA	False	NA	NA	NA	30325539	30316398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30316588_30322839_30322906_30325471
72633	chr1	-	1024	1	Intergenic	novelGene_471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCGAACTCAGAAATCCAC	NA	False	NA	NA	False	NA	NA	NA	155884957	155883933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_155883900_155885000
72635	chr8	+	1305	6	NNC	ENSMUSG00000036913.16	novel	5694	11	NA	NA	29371	-5325	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.894427190999916	8	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGTTTTTGTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	125549201	125556116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_125549397_125549860_125550007_125551456_125551596_125552673_125552978_125554837_125555001_125555758
72636	chr8	-	234	1	NIC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	37	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTAGTTATAGAGATGT	NA	False	NA	NA	False	NA	NA	NA	40960589	40960355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_40960400_40960600
72638	chr7	-	1187	2	ISM	ENSMUSG00000049600.9	ENSMUST00000051390.9	2171	3	2334	-44	2304	44	3prime_fragment	FALSE	canonical	3	196	junction_1	0	102	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCCTCGTAGGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	12741423	12739593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_12740308_12740950
72639	chr3	+	468	4	NIC	ENSMUSG00000037994.15	novel	1081	7	NA	NA	8	-245	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	2.62466929133727	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACACTTCCTGATGGGGT	NA	False	NA	NA	False	NA	NA	NA	135013468	135030349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_135013543_135027646_135027818_135029389_135029533_135030269
72641	chr7	+	627	6	NNC	ENSMUSG00000046865.8	novel	1197	9	NA	NA	6	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	1275.54788228431	1	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCCCTGTCTGGTGCCTA	8537	False	NA	NA	False	NA	NA	NA	27869140	27878692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27869244_27873928_27873995_27876638_27876701_27877629_27877743_27878322_27878459_27878545
72643	chr7	-	1260	1	Intergenic	novelGene_2986	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCCAATGCTATAGCAAA	NA	False	NA	NA	False	NA	NA	NA	80583576	80582316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_80582300_80583600
72644	chr4	+	626	1	Intergenic	novelGene_2183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATTGGCCTTCTGATAG	1468	False	NA	NA	False	NA	NA	NA	155805088	155805714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_155805100_155805700
72645	chr6	+	1025	7	FSM	ENSMUSG00000023367.15	ENSMUST00000101426.11	1540	7	-6	521	-6	-13	multi-exon	FALSE	canonical	1	1	junction_2	2.11476292340825	14	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTATTGCTGGCAGGT	NA	False	NA	NA	False	NA	NA	NA	48818439	48822282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48818524_48819137_48819336_48819522_48819634_48820718_48820776_48820894_48821114_48821601_48821713_48822037
72646	chr9	-	1282	3	NNC	ENSMUSG00000096986.3	novel	1191	3	NA	NA	1492	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	9	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCAAGATCATAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	72437648	72425556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_72426573_72429482_72429584_72437483
72647	chr1	+	2003	2	Antisense	novelGene_ENSMUSG00000053024.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	55	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAACGAGTAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	132448826	132452516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_132449338_132451024
72649	chr2	+	547	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	-123	5	-3	-5	multi-exon	FALSE	canonical	3	78	junction_1	240.5	683	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAACACCTGCTTGCCTCA	110	False	NA	NA	False	NA	NA	NA	164404495	164410425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164404725_164407711_164407859_164410254
72650	chr4	+	1337	3	Intergenic	novelGene_1862	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCTAAAGCAAAGCAGGG	5996	False	NA	NA	False	NA	NA	NA	57900165	57902720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_57900753_57901236_57901329_57902062
72651	chr9	-	494	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	750	988	0	-12	multi-exon	FALSE	canonical	3	2040	junction_3	82.3825763671475	13	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGGTTTAGACAAAACACG	NA	False	NA	NA	False	NA	NA	NA	121686678	121678616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
72652	chr13	-	665	1	ISM	ENSMUSG00000021359.17	ENSMUST00000021787.7	3487	7	14140	337	12641	36	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGGCGTATTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	40869779	40869114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_40869100_40869800
72653	chr7	+	1144	3	Antisense	novelGene_ENSMUSG00000108491.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	8.5	22	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTATGCCCGGCTGCAG	NA	False	NA	NA	False	NA	NA	NA	42155257	42158291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_42156218_42157017_42157122_42158211
72654	chr17	-	984	5	Antisense	novelGene_ENSMUSG00000002279.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTCTAAATATGTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	25881684	25873246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_25873579_25874059_25874214_25874356_25874535_25874963_25875084_25881484
72655	chr18	-	2050	1	Intergenic	novelGene_4556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAATTCACATTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	65569389	65567339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_65567300_65569400
72656	chr2	-	1702	4	NNC	ENSMUSG00000034226.8	novel	1703	3	NA	NA	-6708	-19	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	7.54247233265651	20	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTTCCATTTCTCAAG	4297	False	NA	NA	False	NA	NA	NA	119108461	119099700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119100969_119101162_119101222_119101396_119101722_119108411
72657	chr13	+	710	7	NNC	ENSMUSG00000021548.11	novel	1718	8	NA	NA	111	-3781	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.578572471869	1	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCTGAAACAGAAGCTGGA	NA	False	NA	NA	False	NA	NA	NA	85337706	85356949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_85337772_85338882_85338993_85344382_85344445_85345469_85345655_85350451_85350616_85354246_85354318_85356896
72658	chr7	-	507	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	1	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGATTTGTATATACT	NA	False	NA	NA	False	NA	NA	NA	79047481	79046167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_79046493_79047177_79047262_79047383
72659	chr19	+	1843	1	Intergenic	novelGene_1276	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAAGTGTGTTTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	41582751	41584594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41582800_41584600
72662	chr7	-	1389	4	FSM	ENSMUSG00000030956.16	ENSMUST00000106165.8	1232	4	-183	26	-183	-26	multi-exon	FALSE	canonical	3	27	junction_3	47.005909793935	2	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACATGTTTAGGAGTCAG	NA	False	NA	NA	False	NA	NA	NA	132415007	132361022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_132361897_132373306_132373359_132380864_132381115_132414794
72663	chr3	-	1285	2	ISM	ENSMUSG00000027983.14	ENSMUST00000200236.2	1716	4	0	4370	0	-3234	5prime_fragment	FALSE	canonical	2	4	junction_1	0	4	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATAGGGAGTTCGAGAGG	NA	False	NA	NA	False	NA	NA	NA	131096849	131091306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_131092071_131096328
72664	chr9	+	1534	7	ISM	ENSMUSG00000032009.9	ENSMUST00000034507.9	1827	10	35178	-339	-4301	299	3prime_fragment	FALSE	canonical	3	39	junction_3	4.2687494916219	13	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAGGAAAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	14221556	14237412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_14221727_14225791_14226029_14227361_14227537_14231590_14231710_14232367_14232559_14233858_14234004_14236915
72665	chr11	+	1479	7	NNC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	18	-38	intron_retention	FALSE	non_canonical	0	0	junction_6	55.1646525312078	1	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGTGCAATTGAACGCTTC	NA	False	NA	NA	False	NA	NA	NA	102992569	103002985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102992615_102993507_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995359_103002435
72667	chr5	-	1933	1	FSM	ENSMUSG00000049551.3	ENSMUST00000062572.3	2293	1	356	4	356	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCACTGCTGTGTTCTATC	NA	False	NA	NA	False	NA	NA	NA	135279728	135277795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135277800_135279700
72668	chr6	+	1612	4	NNC	ENSMUSG00000042097.18	novel	2812	4	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7.25718035235908	5	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGACCGTCCAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	117840062	117849721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117840104_117846178_117846235_117847216_117848012_117849001
72671	chr1	+	415	9	NNC	ENSMUSG00000053332.14	novel	759	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2269.71826445486	4	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	160862735	160866104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864427_160865059_160865118_160865564_160865608_160865794_160865843_160866026
72675	chr16	-	809	5	NIC	ENSMUSG00000022515.7	novel	1779	11	NA	NA	-2768	-66	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	38.8546972707291	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTCTGTGGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	4778394	4768297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4778260
72676	chr10	-	834	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	260	0	260	0	multi-exon	FALSE	canonical	3	41	junction_1	0	320	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTCTCCCAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	34003720	34002062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_34002563_34003386
72678	chr8	+	1133	6	NNC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	8	-27	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	37.0113496106262	79	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTTTTATACATTTCCA	NA	False	NA	NA	False	NA	NA	NA	125448905	125460835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460522
72679	chr7	-	992	2	FSM	ENSMUSG00000025489.6	ENSMUST00000026562.6	765	2	-236	9	-236	-9	multi-exon	FALSE	canonical	2	9	junction_1	0	17	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGAAATGTGTGGGCTC	NA	False	NA	NA	False	NA	NA	NA	140530440	140528879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140529362_140529930
72682	chr12	-	1517	1	Intergenic	novelGene_4290	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGTATAACCCTCTCCCAC	NA	False	NA	NA	False	NA	NA	NA	4967265	4965748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_4965700_4967300
72683	chr11	+	615	1	FSM	ENSMUSG00002074955.1	ENSMUST00020183227.1	216	1	-397	-2	-397	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1265	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTATTTTACATGTTTG	NA	False	NA	NA	False	NA	NA	NA	87352714	87353329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87352700_87353300
72685	chr11	+	1057	6	NNC	ENSMUSG00000056938.17	novel	900	8	NA	NA	-13	-14	intron_retention	FALSE	non_canonical	3	12	junction_3	50.7251416952186	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAGAAAACCTCAGTC	NA	False	NA	NA	False	NA	NA	NA	102993920	103003009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102993972_102994060_102994196_102994351_102994471_102994918_102994999_102995258_102995359_103002437
72686	chr4	+	1298	6	ISM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	1271	0	1232	0	3prime_fragment	FALSE	canonical	3	163	junction_2	16.2406896405294	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	NA	False	NA	NA	NA	149571021	149581125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
72687	chr2	+	477	1	ISM	ENSMUSG00000027523.21	ENSMUST00000109096.9	2465	13	61948	0	1618	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	174188060	174188537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_174188100_174188500
72688	chr3	-	1024	10	Fusion	ENSMUSG00000089664.3_ENSMUSG00000068762.12	novel	1153	8	NA	NA	-2434	65	multi-exon	FALSE	canonical	2	6	junction_8	17.5358539238757	8	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGTCAGCTCCCTGTCCT	5803	False	NA	NA	False	NA	NA	NA	107862871	107846356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_107846633_107848308_107848420_107848504_107848601_107849448_107849550_107849648_107849731_107850017_107850083_107850560_107850637_107858112_107858224_107860362_107860439_107862841
72689	chr17	-	696	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	442	-8	442	8	3prime_fragment	FALSE	canonical	3	141	junction_3	32.273139846559	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACATTGCTGTCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	79202087	79192317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
72690	chr2	+	691	2	Genic_Genomic	ENSMUSG00000042814.9	novel	912	1	NA	NA	114	5	multi-exon	TRUE	canonical	3	34	junction_1	0	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGGGGTGTTGTAACCACAA	NA	False	NA	NA	False	NA	NA	NA	152529068	152529871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_152529294_152529405
72691	chr10	+	1577	6	ISM	ENSMUSG00000019944.15	ENSMUST00000168117.8	2229	11	54811	-160	4476	-30	3prime_fragment	FALSE	canonical	1	4	junction_2	1.49666295470958	5	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAAGCTGACTGACTCT	999	False	NA	NA	False	NA	NA	NA	69105942	69125700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_69106704_69108568_69108688_69115174_69115326_69121516_69121606_69124779_69124886_69125349
72692	chr13	-	557	2	Intergenic	novelGene_1336	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAATAAGGACCATCTCT	NA	False	NA	NA	False	NA	NA	NA	31865474	31864120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_31864349_31865145
72694	chr9	-	1861	5	Intergenic	novelGene_1182	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	38	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCGAGGAGCGCTCCCGG	NA	False	NA	NA	False	NA	NA	NA	122507697	122401613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_122401828_122405996_122406048_122483437_122483585_122502140_122502244_122506351
72696	chr17	-	1281	5	NNC	ENSMUSG00000079557.12	novel	1398	5	NA	NA	-4	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	119.101847172913	68	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCTTGCTGGCTAATAT	2685	False	NA	NA	False	NA	NA	NA	33937635	33910518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33937597
72699	chr3	+	838	1	Antisense	novelGene_ENSMUSG00000055436.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGATGTAACTCTAAGAAT	NA	False	NA	NA	False	NA	NA	NA	157716344	157717182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157716300_157717200
72700	chr2	+	1356	1	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	711	906	mono-exon	FALSE	NA	NA	NA	NA	NA	2	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGTGGACTTATAGGAGTC	369	False	NA	NA	False	NA	NA	NA	164405649	164407005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164405600_164407000
72701	chr16	-	632	1	ISM	ENSMUSG00000060166.7	ENSMUST00000076957.7	4868	11	10257	3495	-197	-2730	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCGGCAGCCCTCACTGG	NA	False	NA	NA	False	NA	NA	NA	18042743	18042111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_18042100_18042700
72703	chr15	-	1144	2	ISM	ENSMUSG00000115867.2	ENSMUST00000229708.2	1561	3	51	896	51	-10	5prime_fragment	FALSE	canonical	0	0	junction_1	0	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	78909931	78900424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_78901333_78909695
72704	chr18	+	1079	5	NNC	ENSMUSG00000033632.17	novel	1021	5	NA	NA	3	5542	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	18.1435250158287	11	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAACCACGCCCCATCAG	NA	False	NA	NA	False	NA	NA	NA	25302073	25327832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25327097
72705	chr18	+	1314	8	NNC	ENSMUSG00000024513.17	novel	1953	7	NA	NA	26	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.903115251494	15	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACTGATTGGAACT	NA	False	NA	NA	False	NA	NA	NA	70701430	70759193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_70701509_70701967_70702039_70713723_70713884_70726273_70726412_70749635_70749727_70750906_70751085_70755653_70755793_70758734
72706	chr17	+	575	1	FSM	ENSMUSG00000118239.2	ENSMUST00000236000.2	1692	1	-78	1195	-78	-1195	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGACTCTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	31786058	31786633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31786100_31786600
72707	chr8	+	569	1	NIC	ENSMUSG00000031805.18	novel	4009	24	NA	NA	1491	88	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCACTACACCCAGCTACT	NA	False	NA	NA	False	NA	NA	NA	72132469	72133038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72132500_72133000
72709	chr3	+	1183	7	ISM	ENSMUSG00000027875.13	ENSMUST00000120541.8	2524	11	16533	1369	16533	-1369	internal_fragment	TRUE	canonical	0	0	junction_2	1.06718737290547	7	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCTTGTTTCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	98204283	98216679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_98204451_98204693_98204860_98206435_98206607_98208888_98208996_98209937_98210064_98210480_98210593_98216345
72710	chr17	+	1044	1	Intergenic	novelGene_270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCAGCTTTGTGGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	56916913	56917957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_56916900_56918000
72711	chr7	+	1361	6	FSM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	279	36	279	-36	multi-exon	FALSE	canonical	3	174	junction_2	8.49470423263812	27	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTAAATTATTGGAATAAA	NA	False	NA	NA	False	NA	NA	NA	126528329	126544767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126528471_126529804_126529975_126540504_126540595_126540682_126540736_126541318_126541515_126544056
72713	chr6	+	833	2	Intergenic	novelGene_4229	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	31	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTTGCCTTTACATTT	NA	False	NA	NA	False	NA	NA	NA	117856896	117861551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_117857120_117860941
72717	chr11	-	796	1	Intergenic	novelGene_2220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGGATTCCTCTGTGCC	NA	False	NA	NA	False	NA	NA	NA	12195599	12194803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_12194800_12195600
72719	chr9	-	859	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	11	0	11	0	multi-exon	FALSE	canonical	3	15	junction_6	11.4260910006684	117	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	NA	False	NA	NA	NA	78254429	78238299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
72720	chr5	-	981	1	Intergenic	novelGene_883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATACAAAATAGACTGCAG	NA	False	NA	NA	False	NA	NA	NA	144482514	144481533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_144481500_144482500
72721	chr19	+	908	6	Antisense	novelGene_ENSMUSG00000024990.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGTGGAGCGACGGAGCC	7992	False	NA	NA	False	NA	NA	NA	38105076	38113245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_38105356_38106717_38106935_38112477_38112584_38112743_38112881_38112966_38113099_38113208
72722	chr7	-	2186	4	ISM	ENSMUSG00000058420.9	ENSMUST00000203465.2	2548	6	8083	25	8083	-23	3prime_fragment	FALSE	canonical	2	4	junction_1	1.4142135623731	6	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAGATTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	118033654	117979965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_117981276_118007247_118007404_118009146_118009268_118033055
72723	chr7	+	805	1	Intergenic	novelGene_2895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTTATTCATTTATT	NA	False	NA	NA	False	NA	NA	NA	24110125	24110930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_24110100_24110900
72724	chr7	+	1892	1	Intergenic	novelGene_2977	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTCGAGCTGAGGAGAAGT	NA	False	NA	NA	False	NA	NA	NA	67260535	67262427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_67260500_67262400
72725	chr4	-	467	3	ISM	ENSMUSG00000078350.12	ENSMUST00000130175.8	477	4	245	0	-6	0	3prime_fragment	FALSE	canonical	3	33	junction_2	2.5	150	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGGGATTCCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	154110079	154107766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_154107911_154108144_154108349_154109960
72726	chr4	-	1107	6	ISM	ENSMUSG00000040935.13	ENSMUST00000038749.11	2333	16	10260	4	660	-4	3prime_fragment	FALSE	canonical	1	1	junction_5	9.44457516249408	15	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGTTTTTACGCCGCC	NA	False	NA	NA	False	NA	NA	NA	140459694	140454669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_140455121_140456177_140456340_140457019_140457091_140458222_140458347_140458432_140458590_140459552
72728	chr8	+	2706	9	ISM	ENSMUSG00000052557.12	ENSMUST00000064488.11	2652	11	29255	-579	29253	579	3prime_fragment	TRUE	canonical	3	16	junction_5	6.27992834354024	8	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAATCTCTTCTCTAAAC	NA	False	NA	NA	False	NA	NA	NA	117914128	117932504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_117914237_117917010_117917229_117917402_117917525_117919978_117920092_117920851_117921002_117922504_117922642_117923190_117923320_117930688_117930799_117930885
72729	chr17	+	1309	2	NNC	ENSMUSG00000061544.14	novel	4525	6	NA	NA	9509	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTTTAGAAATCTATCAA	809	False	NA	NA	False	NA	NA	NA	21964401	21967934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21964781_21967004
72731	chr9	-	1785	13	ISM	ENSMUSG00000040146.10	ENSMUST00000045726.8	2543	19	7865	2	-4160	-1	3prime_fragment	FALSE	canonical	0	0	junction_3	2.12622513702885	11	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTCGGTCACATCCTAAC	NA	False	NA	NA	False	NA	NA	NA	21892877	21882824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21883306_21885317_21885433_21885683_21885837_21886903_21887004_21887087_21887157_21887245_21887342_21888034_21888157_21888240_21888274_21888485_21888573_21888677_21888726_21891797_21891883_21891979_21892084_21892585
72732	chr5	+	1038	1	ISM	ENSMUSG00000015944.10	ENSMUST00000016088.9	7367	9	43471	124	8224	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTACTGTATGATGAAGAG	NA	False	NA	NA	False	NA	NA	NA	134172020	134173058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_134172000_134173100
72735	chr12	-	602	4	FSM	ENSMUSG00000091803.8	ENSMUST00000002757.11	2007	4	16	1389	6	0	multi-exon	FALSE	canonical	3	142	junction_1	95.530099968544	795	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	1004	False	NA	NA	False	NA	NA	NA	81531878	81518866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531670
72736	chr3	-	799	6	NIC	ENSMUSG00000092607.10	novel	1054	7	NA	NA	-29	-9	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	190.925535222505	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCTGGGAGCACACTGAT	1281	False	NA	NA	False	NA	NA	NA	95041279	95037048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95037274_95037474_95037670_95040327_95040423_95040510_95040600_95040868_95040940_95041155
72738	chr18	+	1292	1	Antisense	novelGene_ENSMUSG00000024420.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCTCCATCCTGGAGCC	5375	False	NA	NA	False	NA	NA	NA	13978400	13979692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_13978400_13979700
72742	chr14	-	746	1	ISM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	92242	4	16383	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACTCATTTTGCATACT	NA	False	NA	NA	False	NA	NA	NA	121524504	121523758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_121523800_121524500
72743	chr10	+	1852	3	ISM	ENSMUSG00000038916.8	ENSMUST00000092629.4	4105	7	37168	37	33210	-37	3prime_fragment	FALSE	canonical	2	5	junction_1	1	4	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAATAAATATCTGTTGAA	NA	False	NA	NA	False	NA	NA	NA	29057002	29075589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_29057030_29072260_29073437_29074940
72746	chrX	-	377	2	Antisense	novelGene_ENSMUSG00000081049.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGAGCTTTTCTTCCATT	6838	False	NA	NA	False	NA	NA	NA	78239121	78238629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_78238790_78238904
72747	chr9	-	1540	1	Genic_Genomic	ENSMUSG00000091537.3	novel	NA	NA	NA	NA	6468	210	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCTAGGGCTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	108904965	108903425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_108903400_108905000
72748	chr8	-	294	3	Intergenic	novelGene_1669	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	1	13	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTACAAACAGGCAACATGG	NA	False	NA	NA	False	NA	NA	NA	78269906	78259285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_78259460_78266828_78266877_78269834
72749	chr11	+	553	4	Antisense	novelGene_ENSMUSG00000000753.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCCAGAGAGAAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	75301818	75306555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75301868_75304730_75304875_75305745_75305951_75306400
72750	chr10	+	491	5	NNC	ENSMUSG00000061315.15	novel	6745	9	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5147.23131280303	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTGCTAGATCTTTTCC	4946	False	NA	NA	False	NA	NA	NA	127871477	127884506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127871553_127872357_127872434_127883919_127883997_127884113_127884237_127884366
72752	chr6	-	998	2	FSM	ENSMUSG00000057103.12	ENSMUST00000239124.2	1008	2	1	9	1	-4	multi-exon	FALSE	canonical	3	9	junction_1	0	65	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCACACCAGATTCTAATG	9875	False	NA	NA	False	NA	NA	NA	85892658	85887147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_85888003_85892515
72753	chr8	-	1156	8	NNC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	1671	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.2431520754205	1	56	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCTGGAGGAACTATTC	NA	False	NA	NA	False	NA	NA	NA	27690890	27687503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_27687747_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689634_27689865_27689976_27690260_27690373_27690755
72755	chr5	+	853	1	Antisense	novelGene_ENSMUSG00000042589.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAATGTCTTGAAAATGA	NA	False	NA	NA	False	NA	NA	NA	122033137	122033990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_122033100_122034000
72756	chr6	+	1374	2	FSM	ENSMUSG00000085355.3	ENSMUST00000154673.2	1747	2	364	9	364	-1	multi-exon	FALSE	canonical	3	14	junction_1	0	7	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGGTCCATTCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	148846728	148848618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148847919_148848434
72757	chr4	+	1032	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	100	204	25	-204	multi-exon	FALSE	canonical	3	345	junction_3	21.2882009573378	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGGTAAGAATTGTTGGC	7725	False	NA	NA	False	NA	NA	NA	126156217	126169472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
72759	chr2	-	1037	12	NIC	ENSMUSG00000027030.16	novel	3536	18	NA	NA	-2585	-78	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	17.0744601695821	1	17	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAACAAATAAGAAGATTGT	NA	False	NA	NA	False	NA	NA	NA	68199448	68042168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68198740_68198843_68199339
72760	chr9	+	550	2	Genic_Genomic	ENSMUSG00000074280.7	novel	409	1	NA	NA	-48	214	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57391197	57391868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_57391445_57391565
72762	chr4	-	818	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	6	149	-1	-149	multi-exon	FALSE	canonical	3	869	junction_5	34.1829229619443	2577	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCTGTTGGCCTGCTGA	-10	True	NA	NA	False	NA	NA	NA	41723164	41714946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
72763	chr7	+	1251	2	Antisense	novelGene_ENSMUSG00000047767.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGTCTGAAGACAGCTAC	6987	False	NA	NA	False	NA	NA	NA	100950602	100952359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_100950792_100951297
72765	chr3	+	692	1	FSM	ENSMUSG00000027935.15	ENSMUST00000198809.2	762	1	8	62	8	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGACTTTGTATTCTTAC	NA	False	NA	NA	False	NA	NA	NA	90121024	90121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90121000_90121700
72766	chr6	-	1183	7	NNC	ENSMUSG00000089997.3	novel	3678	16	NA	NA	51	-36432	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6.57647321898295	80	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTGTCCATCGACCCA	NA	False	NA	NA	False	NA	NA	NA	87699732	87689006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695765_87695958_87698819_87699089_87699675
72767	chr19	+	900	4	FSM	ENSMUSG00000024854.5	ENSMUST00000025773.5	913	4	11	2	11	1	multi-exon	FALSE	canonical	3	47	junction_3	2.16024689946929	170	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGACCTTACATCTCT	NA	False	NA	NA	False	NA	NA	NA	4281963	4283686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4282243_4282516_4282607_4282801_4282914_4283267
72768	chr4	+	1786	7	ISM	ENSMUSG00000028979.18	ENSMUST00000052060.7	3058	11	11	6673	0	-1368	5prime_fragment	FALSE	canonical	2	3	junction_4	10.0235833025033	6	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGAGCATGACCTTGTCC	NA	False	NA	NA	False	NA	NA	NA	148687031	148693283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_148687048_148687124_148687354_148687448_148687627_148688143_148688276_148690036_148690234_148690485_148690634_148692397
72770	chr8	-	1469	1	ISM	ENSMUSG00000064125.15	ENSMUST00000168386.9	4616	7	6301	0	5901	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTTTGTCAAGGTATT	NA	False	NA	NA	False	NA	NA	NA	4261011	4259542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_4259500_4261000
72771	chr19	+	1698	1	ISM	ENSMUSG00000013663.8	ENSMUST00000013807.8	8292	9	66262	704	12534	-704	mono-exon	FALSE	NA	NA	NA	NA	NA	18	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAATGAAATGTTTAAC	1101	False	NA	NA	False	NA	NA	NA	32801158	32802856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_32801200_32802900
72772	chr7	-	1623	2	FSM	ENSMUSG00000062369.3	ENSMUST00000076501.2	1407	2	-46	-170	-46	115	multi-exon	FALSE	canonical	1	1	junction_1	0	4	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGGGAGGTCTGTATAT	NA	False	NA	NA	False	NA	NA	NA	104491757	104489348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_104490898_104491683
72773	chr7	+	1141	6	ISM	ENSMUSG00000063065.14	ENSMUST00000091328.4	1716	8	2841	28	161	-28	3prime_fragment	FALSE	canonical	3	189	junction_2	16.3389106124001	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATATAGAGATGTGTAT	9053	False	NA	NA	False	NA	NA	NA	126362609	126364963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
72774	chr17	-	1536	3	FSM	ENSMUSG00000117341.2	ENSMUST00000233459.2	585	3	-9	-942	-9	942	multi-exon	FALSE	canonical	3	10	junction_1	0.5	6	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGTTGCCTTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	9945299	9923328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_9924688_9941118_9941218_9945221
72776	chr15	-	771	3	ISM	ENSMUSG00000022483.18	ENSMUST00000088355.12	4862	53	27278	255	11542	-255	3prime_fragment	FALSE	canonical	3	15	junction_2	1	17	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAATCTCGGTGTTCTA	9675	False	NA	NA	False	NA	NA	NA	97875260	97873737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_97874068_97874522_97874766_97875062
72777	chr8	+	907	2	NNC	ENSMUSG00000065952.14	novel	637	2	NA	NA	1	186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	96	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGCCTCTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	3617995	3623836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3618187_3623120
72778	chr2	-	1861	2	ISM	ENSMUSG00000027670.5	ENSMUST00000029213.5	3657	3	2082	1781	2082	-1781	3prime_fragment	FALSE	canonical	2	3	junction_1	0	9	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAAGAGTAAATGGTGTT	NA	False	NA	NA	False	NA	NA	NA	165240243	165237460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165238219_165239140
72779	chr17	+	1941	9	ISM	ENSMUSG00000037321.18	ENSMUST00000170086.8	2953	11	1912	9	-426	-3	3prime_fragment	FALSE	canonical	0	0	junction_6	4.11551940828858	11	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTGTGGCTTCTCCCGT	8903	False	NA	NA	False	NA	NA	NA	34408438	34416190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34408535_34409536_34409743_34410302_34410501_34411810_34411940_34412101_34412291_34412458_34412633_34412854_34413018_34413817_34413955_34415541
72781	chr15	-	1642	4	ISM	ENSMUSG00000033697.17	ENSMUST00000036176.16	4500	12	91254	13	-1226	-13	3prime_fragment	FALSE	canonical	3	65	junction_3	2.16024689946929	15	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGCACACTCGCTGATT	6320	False	NA	NA	False	NA	NA	NA	76611029	76608197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76609377_76609522_76609693_76610122_76610215_76610828
72782	chr16	-	537	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	21	160	21	-74	multi-exon	FALSE	canonical	3	971	junction_1	40.7982842776507	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATGTATTTTGCACAGA	NA	False	NA	NA	False	NA	NA	NA	35891864	35864290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
72784	chr11	+	685	5	NIC	ENSMUSG00000018858.16	novel	749	6	NA	NA	1	-3	combination_of_known_junctions	FALSE	canonical	3	79	junction_2	473.23428394401	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCCTGTTTCCAGTGAGA	NA	False	NA	NA	False	NA	NA	NA	115294583	115301742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115294700_115297376_115297414_115300885_115300969_115301057_115301228_115301463
72786	chr5	+	2126	1	Antisense	novelGene_ENSMUSG00000032850.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATGTGCTGTATGCCCAG	9865	False	NA	NA	False	NA	NA	NA	118328834	118330960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_118328800_118331000
72787	chr13	+	1179	1	Intergenic	novelGene_1386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACCCCAAACCACCAAAAT	NA	False	NA	NA	False	NA	NA	NA	56760775	56761954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_56760800_56762000
72789	SIRV7	-	448	2	NNC	SIRV7A	novel	2462	5	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	169	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147925	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1356_147831
72790	chrX	-	1521	2	Intergenic	novelGene_3925	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACACCCTGCCCGAGTTT	NA	False	NA	NA	False	NA	NA	NA	49712206	49710476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_49711660_49711868
72791	chr19	-	768	3	NNC	ENSMUSG00000024965.10	novel	2988	14	NA	NA	19371	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	9.5	84	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	8110	False	NA	NA	False	NA	NA	NA	6977342	6976346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6976889_6977006_6977149_6977258
72792	chr17	+	1512	1	Intergenic	novelGene_74	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCGTAATGCATTCACGT	NA	False	NA	NA	False	NA	NA	NA	22957288	22958800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_22957300_22958800
72793	chr11	+	546	2	FSM	ENSMUSG00000020778.13	ENSMUST00000146066.8	435	2	-41	-70	20	0	multi-exon	FALSE	canonical	1	2	junction_1	0	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9130	False	NA	NA	False	NA	NA	NA	116089743	116106144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116089810_116105664
72794	chr2	-	3114	13	Antisense	novelGene_ENSMUSG00000079039.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	79	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCGGAGCTTACAGTGGA	NA	False	NA	NA	False	NA	NA	NA	130988105	130969376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_130969440_130975986_130976042_130977712_130977820_130978864_130978983_130980346_130980534_130980893_130981003_130981321_130981439_130982815_130982993_130983750_130983839_130984567_130984672_130984766_130985030_130985539_130985644_130986483
72795	chr2	+	1641	1	Intergenic	novelGene_2675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATACGAGTATTTTCTCAA	NA	False	NA	NA	False	NA	NA	NA	104647387	104649028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_104647400_104649000
72796	chr17	+	1509	1	Antisense	novelGene_ENSMUSG00000071984.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGACAGTGAAGGCGAGA	NA	False	NA	NA	False	NA	NA	NA	7992139	7993648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_7992100_7993600
72799	chr5	+	1446	1	NIC	ENSMUSG00000029205.13	novel	1843	5	NA	NA	-26	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	26	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATCTCCACCAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	66133212	66134658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_66133200_66134700
72800	chr10	-	703	1	Intergenic	novelGene_3403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGTCTTGGTTTCATC	NA	False	NA	NA	False	NA	NA	NA	18365732	18365029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_18365000_18365700
72801	chr11	+	770	5	ISM	ENSMUSG00000005947.12	ENSMUST00000006101.4	3845	31	47858	0	47858	0	3prime_fragment	FALSE	canonical	3	28	junction_3	3.24037034920393	181	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	NA	False	NA	NA	NA	73029266	73038272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_73029338_73029592_73029689_73031492_73031589_73036366_73036478_73037876
72803	chr10	-	466	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	2	0	2	0	multi-exon	FALSE	canonical	3	2872	junction_3	751.769616009822	15245	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTGCTCTGTAACTTT	NA	False	NA	NA	False	NA	NA	NA	80691041	80688658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
72805	chr8	+	552	1	FSM	ENSMUSG00000031799.11	ENSMUST00000238752.2	2063	1	998	513	448	-513	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTATCTAGCAAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	72890099	72890651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72890100_72890700
72807	chr4	+	1750	11	FSM	ENSMUSG00000008932.11	ENSMUST00000238795.2	3005	11	76	1179	76	-1173	multi-exon	TRUE	canonical	0	0	junction_7	1.32664991614216	7	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATCCCAGTCCAGGTAGA	2472	False	NA	NA	False	NA	NA	NA	107825606	107869550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_107825908_107834800_107834881_107850135_107850352_107859373_107859417_107861466_107861687_107864686_107864787_107865337_107865572_107866875_107867071_107867566_107867702_107868089_107868193_107869427
72808	chr16	+	1023	7	NNC	ENSMUSG00000055447.20	novel	1313	10	NA	NA	58	-73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	29.9814757623585	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTAACTGACTTCCATCC	NA	False	NA	NA	False	NA	NA	NA	49676076	49731336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716832_49731184
72809	chr11	-	635	1	ISM	ENSMUSG00000034247.10	ENSMUST00000041272.10	5968	12	46964	814	29045	-814	mono-exon	FALSE	NA	NA	NA	NA	NA	17	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGTTTCTGAATCTCAA	8744	False	NA	NA	False	NA	NA	NA	103256549	103255914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_103255900_103256500
72810	chr19	-	1819	1	NIC	ENSMUSG00000033610.17	novel	7414	7	NA	NA	48774	12879	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATCCCGAGTTGTGTCA	5552	False	NA	NA	False	NA	NA	NA	34806475	34804656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_34804700_34806500
72811	chr4	-	325	1	Intergenic	novelGene_1995	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAACACGTGTACGAGAG	NA	False	NA	NA	False	NA	NA	NA	138746800	138746475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_138746500_138746800
72812	chr17	-	1017	2	NIC	ENSMUSG00000036185.10	novel	935	4	NA	NA	9	0	intron_retention	FALSE	canonical	3	47	junction_1	0	94	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	35246626	35244952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35245763_35246419
72813	chr1	-	651	1	NIC	ENSMUSG00000026211.19	novel	5679	20	NA	NA	-53	215	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCGCCCACTGGGCAGAA	NA	False	NA	NA	False	NA	NA	NA	75463930	75463279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_75463300_75463900
72814	chr5	-	591	3	NNC	ENSMUSG00000010721.16	novel	3422	18	NA	NA	26	-105806	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	2.5	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTAGAAAGAGATATGT	NA	False	NA	NA	False	NA	NA	NA	29583356	29568880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_29568954_29569918_29570205_29583124
72815	chr1	-	1056	2	ISM	ENSMUSG00000026155.14	ENSMUST00000129254.8	1365	10	61307	-669	-605	-2	3prime_fragment	FALSE	canonical	3	386	junction_1	0	2	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTTTTATTTGTGGGTT	4454	False	NA	NA	False	NA	NA	NA	23887463	23884707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_23885645_23887344
72816	chr7	-	1491	12	Antisense	novelGene_ENSMUSG00000030492.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGCTGGTAGCTCCAGGG	NA	False	NA	NA	False	NA	NA	NA	35165343	35149220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_35149310_35151791_35151941_35152817_35153062_35153478_35153603_35153980_35154082_35155000_35155044_35155535_35155662_35156431_35156534_35159268_35159369_35160199_35160348_35163018_35163196_35165255
72817	chr1	-	2001	2	FSM	ENSMUSG00000050534.9	ENSMUST00000055884.8	1935	2	-4	-62	-4	62	multi-exon	FALSE	canonical	0	0	junction_1	0	4	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121456198	121437508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_121438453_121455141
72818	chr5	-	927	4	NNC	ENSMUSG00000036526.9	novel	1299	6	NA	NA	4385	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.64997911442	9	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGCAGAGGTTCTTATC	NA	False	NA	NA	False	NA	NA	NA	140863575	140858752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_140859285_140860095_140860212_140862151_140862277_140863421
72819	chr10	+	558	2	ISM	ENSMUSG00000006344.18	ENSMUST00000218807.2	2051	11	20824	14	6344	-12	3prime_fragment	FALSE	canonical	1	1	junction_1	0	16	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACAGCGTGAACTGATT	NA	False	NA	NA	False	NA	NA	NA	75446258	75451007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_75446373_75450563
72821	chr11	-	528	2	Intergenic	novelGene_2273	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_1	0	95	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTATGCGTGTGAGACT	9484	False	NA	NA	False	NA	NA	NA	52249409	52248734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_52249171_52249317
72822	chr10	-	371	1	Intergenic	novelGene_3538	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATAACAAGCATTAAGTG	NA	False	NA	NA	False	NA	NA	NA	119945554	119945183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_119945200_119945600
72823	chr11	-	1404	10	FSM	ENSMUSG00000020264.6	ENSMUST00000039305.6	2429	10	54	971	54	-971	multi-exon	FALSE	canonical	0	0	junction_1	0.628539361054709	2	28	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCTTTGTGGTGGGGA	2283	False	NA	NA	False	NA	NA	NA	55075849	55050266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_55050442_55053471_55053642_55055058_55055226_55059655_55059755_55060679_55060899_55065493_55065579_55070150_55070247_55071532_55071622_55072370_55072462_55075636
72824	chr17	+	1711	1	Antisense	novelGene_ENSMUSG00000014769.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGCACTAAAACTCCA	8124	False	NA	NA	False	NA	NA	NA	15714705	15716416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_15714700_15716400
72826	chr8	-	1698	1	Intergenic	novelGene_1577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATAAGCTTCTACAGTC	NA	False	NA	NA	False	NA	NA	NA	14001154	13999456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_13999500_14001200
72827	chr17	+	696	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	75	0	75	0	multi-exon	FALSE	canonical	3	3024	junction_1	2440.4692555941	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6697585	6703695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
72829	chr13	+	1392	2	FSM	ENSMUSG00000042417.6	ENSMUST00000225555.2	2478	2	1087	-1	804	0	multi-exon	FALSE	canonical	2	4	junction_1	0	9	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTGTGTGCGACAATTA	NA	False	NA	NA	False	NA	NA	NA	113125424	113127311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_113125611_113126105
72830	chr19	+	1115	2	NNC	ENSMUSG00000097779.3	novel	1494	2	NA	NA	97	6	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	43	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTAAGACTCAGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	53449149	53451160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53449251_53450146
72831	chr2	-	601	2	FSM	ENSMUSG00000075467.5	ENSMUST00000125848.2	2766	2	0	2165	0	-2165	multi-exon	FALSE	canonical	3	60	junction_1	0	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGCTCCTGTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	26242112	26240297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26240571_26241784
72833	chr11	-	1867	1	Antisense	novelGene_ENSMUSG00000048721.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACTTCATGTGATGGTGA	NA	False	NA	NA	False	NA	NA	NA	46129649	46127782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_46127800_46129600
72834	chr7	-	687	4	FSM	ENSMUSG00000036835.8	ENSMUST00000208628.2	488	4	-50	-149	-50	0	multi-exon	FALSE	canonical	3	17	junction_3	378.867611002401	29	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	854	False	NA	NA	False	NA	NA	NA	30263102	30261289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262933
72835	chr5	-	1163	5	NIC	ENSMUSG00000037339.18	novel	2009	6	NA	NA	24	3	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	76.423164027669	50	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTGCCTAGATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	33786903	33757696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_33758225_33767775_33767831_33771946_33772179_33786196_33786322_33786680
72836	chr10	+	1033	5	NNC	ENSMUSG00000020088.11	novel	2613	7	NA	NA	-179	311	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	555.749269005367	1	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCATTGGGCTCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	61520678	61527628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61520733_61520844_61520993_61522123_61522258_61525552_61525685_61527063
72838	chr6	-	304	1	Intergenic	novelGene_4238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGCAGTAGCATCTATTG	8360	False	NA	NA	False	NA	NA	NA	120286568	120286264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_120286300_120286600
72839	chr2	-	800	1	ISM	ENSMUSG00000051413.18	ENSMUST00000056924.14	5485	3	12851	17	9333	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	24	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGATGTGCTTTGCAGT	NA	False	NA	NA	False	NA	NA	NA	153070495	153069695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_153069700_153070500
72841	chr6	-	1661	1	Intergenic	novelGene_4139	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACCCAGAATTCCAGGTA	NA	False	NA	NA	False	NA	NA	NA	35133925	35132264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_35132300_35133900
72842	SIRV4	-	647	4	NNC	SIRV4A	novel	670	4	NA	NA	16	0	intron_retention	FALSE	non_canonical	0	0	junction_1	3534.59109689115	1	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15106	8322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV4_-_8370_8633_8991_13672_13829_15019
72843	chr8	-	979	1	NIC	ENSMUSG00000031916.18	novel	4476	5	NA	NA	1	-2797	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATTATGCAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	107783315	107782336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_107782300_107783300
72844	chr17	-	1134	4	ISM	ENSMUSG00000024053.12	ENSMUST00000233148.2	758	5	12224	-845	-27	0	3prime_fragment	FALSE	canonical	2	7	junction_2	4.49691252107735	57	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTTTTCTGTATTTGG	NA	False	NA	NA	False	NA	NA	NA	71563368	71559166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_71560089_71562113_71562243_71562974_71563008_71563318
72845	chr6	-	1593	4	NNC	ENSMUSG00000092247.3	novel	399	4	NA	NA	4	9227	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	0.471404520791032	16	34	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAGTGGGAATCACCATC	NA	False	NA	NA	False	NA	NA	NA	90209795	90199482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_90200748_90201237_90201354_90202364_90202450_90209668
72846	chr8	+	707	5	ISM	ENSMUSG00000065952.14	ENSMUST00000136592.2	1621	6	-30	4304	-22	1875	5prime_fragment	FALSE	canonical	3	9	junction_4	8.46684711093805	91	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTAAAACACTTGTACACA	NA	False	NA	NA	False	NA	NA	NA	3617967	3630472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_3618097_3623120_3623222_3627840_3628046_3629722_3629922_3630399
72848	chrX	+	1267	5	FSM	ENSMUSG00000043929.17	ENSMUST00000113911.9	1227	5	-40	0	20	0	multi-exon	FALSE	canonical	3	23	junction_4	15.1224171348366	59	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	93278555	93297673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93297545
72849	chr7	-	527	3	ISM	ENSMUSG00000006311.9	ENSMUST00000108147.3	1048	6	1055	-10	1055	10	3prime_fragment	FALSE	canonical	3	44	junction_1	1	137	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCGTGTCTGGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	30334222	30333030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30333260_30333413_30333527_30334037
72850	chr14	-	570	3	FSM	ENSMUSG00000085984.8	ENSMUST00000153646.8	764	3	198	-4	9	4	multi-exon	FALSE	canonical	3	12	junction_1	2	69	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAAGGCCTTACTATG	NA	False	NA	NA	False	NA	NA	NA	66534380	66532778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_66533036_66533403_66533594_66534257
72851	chr11	-	1303	7	ISM	ENSMUSG00000020614.14	ENSMUST00000020938.8	2541	11	43777	9	-2057	-9	3prime_fragment	FALSE	canonical	0	0	junction_4	1.25830573921179	8	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCGGATAACTGGCTTT	4348	False	NA	NA	False	NA	NA	NA	109569305	109563760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_109564391_109565448_109565509_109565931_109566014_109566668_109566779_109567979_109568161_109568596_109568713_109569181
72852	chr15	-	445	3	FSM	ENSMUSG00000078938.10	ENSMUST00000109314.9	448	3	7	-4	7	4	multi-exon	FALSE	canonical	3	12	junction_1	0	112	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGGACCCCTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	89294459	89274372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89274643_89281528_89281638_89294393
72853	ERCC-00044	+	1149	1	FSM	ERCC-00044A	DQ459424	1149	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00044_+_0_1100
72854	chr11	+	439	1	Intergenic	novelGene_2494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATGCTGAGAGAACTCC	3710	False	NA	NA	False	NA	NA	NA	106164016	106164455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_106164000_106164500
72855	chr14	-	877	2	FSM	ENSMUSG00000075486.11	ENSMUST00000131022.2	542	2	235	-570	-3	570	multi-exon	FALSE	canonical	3	419	junction_1	0	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCAAGGGCACTCTGTG	NA	False	NA	NA	False	NA	NA	NA	101877887	101876921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_101877736_101877824
72856	chr16	+	1343	8	ISM	ENSMUSG00000022867.12	ENSMUST00000239066.2	4986	26	61244	22861	-6552	-9	internal_fragment	FALSE	canonical	3	56	junction_4	14.8117438238055	12	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTCAGAGGACTAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	76871837	76890807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_76871875_76872158_76872255_76873247_76873410_76873891_76874122_76877211_76877283_76878344_76878574_76880636_76880838_76890490
72858	chr17	+	2275	18	ISM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	15815	24066	15815	-9192	internal_fragment	TRUE	canonical	0	0	junction_17	28.2181320391437	3	22	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCAAGTTTGCCCGCCT	NA	False	NA	NA	False	NA	NA	NA	27292092	27317131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_27292143_27302503_27302626_27304062_27304150_27305812_27305972_27306119_27306219_27306564_27306649_27307925_27308073_27308235_27308332_27308589_27308641_27308803_27308947_27310284_27310385_27310466_27310628_27310787_27310930_27312148_27312311_27313768_27313942_27314437_27314558_27314860_27315044_27316935
72859	chr3	-	843	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	57	8	57	-8	multi-exon	FALSE	canonical	3	839	junction_3	34.2963554915096	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAATTGGAGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	87965745	87963834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
72860	chr18	+	1432	1	Intergenic	novelGene_4573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGTAGCCTAATCTGACC	NA	False	NA	NA	False	NA	NA	NA	77133145	77134577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_77133100_77134600
72861	chr9	+	980	6	ISM	ENSMUSG00000005131.5	ENSMUST00000005262.2	1237	9	9066	21	9054	-21	3prime_fragment	FALSE	canonical	0	0	junction_1	1.09544511501033	6	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATACTTTTTTTTGACA	3903	False	NA	NA	False	NA	NA	NA	53325651	53344082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_53325693_53332868_53333070_53334187_53334319_53336822_53336994_53339434_53339491_53343702
72862	chr15	-	238	3	ISM	ENSMUSG00000014313.16	ENSMUST00000014457.15	503	4	86	3366	47	1452	5prime_fragment	FALSE	canonical	3	8539	junction_2	556.5	4	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGATGAGGAAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	35938306	35935487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_35935560_35937300_35937431_35938270
72864	chr16	-	1046	1	Intergenic	novelGene_3596	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCACTGTTCTTTCAGGGTG	NA	False	NA	NA	False	NA	NA	NA	15747404	15746358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_15746400_15747400
72865	chr2	-	461	2	NNC	ENSMUSG00000078956.4	novel	1437	2	NA	NA	-36259	-967	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	3	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGATAATTGGTTGCTGGG	NA	False	NA	NA	False	NA	NA	NA	160498150	160448882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_160449243_160498049
72866	chrX	+	669	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	120	1230	42	76	multi-exon	FALSE	canonical	3	265	junction_1	0	2	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTTTCGCGCCCTCCCG	1599	False	NA	NA	False	NA	NA	NA	10583748	10584699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_10583944_10584225
72867	chr2	+	346	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	189.688048003968	147	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAACTCTGAGCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	135488442	135493981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_135488469_135490846_135490892_135493417_135493478_135493766
72869	chr5	-	955	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	29	4	29	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	120	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCCGGGCTTCGAATGGC	1761	False	NA	NA	False	NA	NA	NA	137500658	137499703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137499700_137500700
72870	chr7	+	1882	4	NNC	ENSMUSG00000023072.15	novel	2825	20	NA	NA	3816	1123	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	58.6590904198905	8	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAGTGACAAGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	35131562	35139237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35131700_35131942_35132033_35134898_35135069_35137752
72872	chr8	-	944	5	NNC	ENSMUSG00000034416.19	novel	1716	8	NA	NA	7109	-14	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	10.8021988502342	2	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGGCTTTCATTGTG	4532	False	NA	NA	False	NA	NA	NA	117743725	117736075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117736470_117738236_117738365_117740602_117740737_117741601_117741721_117743556
72873	chr12	+	839	6	FSM	ENSMUSG00000064215.14	ENSMUST00000066701.13	889	6	47	3	0	-3	multi-exon	FALSE	canonical	3	10	junction_3	3.54400902933387	74	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCTCATTGTTCCCCT	6634	False	NA	NA	False	NA	NA	NA	103400517	103406495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403934_103403965_103405659_103405822_103406212
72874	chr15	+	727	2	Antisense	novelGene_ENSMUSG00000116284.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	73	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCAGGACCTTCTAGCC	NA	False	NA	NA	False	NA	NA	NA	77255028	77258054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_77255477_77257775
72875	chr10	-	548	4	FSM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	-4	6	-4	-6	multi-exon	FALSE	canonical	3	559	junction_1	37.4788829431544	2836	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTATGTGGTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	128759397	128755788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128755977_128756427_128756561_128758522_128758596_128759243
72876	chr10	-	1348	1	Intergenic	novelGene_3493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATGATAATGGACTGAAC	NA	False	NA	NA	False	NA	NA	NA	81883862	81882514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_81882500_81883900
72877	chr13	-	1928	1	Intergenic	novelGene_1519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCTACAGAGTAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	99009607	99007679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_99007700_99009600
72878	chr17	+	529	3	Intergenic	novelGene_249	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0.5	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCAAGGTATGGACCCGG	1348	False	NA	NA	False	NA	NA	NA	46162506	46165450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_46162586_46163405_46163656_46165250
72879	chrX	+	777	2	Antisense	novelGene_ENSMUSG00000031162.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	9	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCAGCCCAGTATAAAG	NA	False	NA	NA	False	NA	NA	NA	7820031	7843374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_7820112_7842677
72883	chr3	+	942	3	FSM	ENSMUSG00000039887.12	ENSMUST00000198341.2	831	3	-117	6	0	-6	multi-exon	FALSE	canonical	3	72	junction_1	4	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATGCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	121085421	121114304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_121085633_121092252_121092408_121113728
72884	chr11	+	605	1	FSM	ENSMUSG00000082045.5	ENSMUST00000120901.2	569	1	-19	-17	-19	17	mono-exon	FALSE	NA	NA	NA	NA	NA	62	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102014878	102015483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102014900_102015500
72885	chr19	+	1267	1	Intergenic	novelGene_1240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAGGGAAGTCAAGGGCAC	NA	False	NA	NA	False	NA	NA	NA	27407427	27408694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_27407400_27408700
72888	chr2	-	1620	1	ISM	ENSMUSG00000044033.17	ENSMUST00000049544.14	8969	23	159109	5	8391	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	23	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCATCCTGAGGACCTCAA	9864	False	NA	NA	False	NA	NA	NA	76841870	76840250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_76840200_76841900
72891	chr7	+	1432	10	FSM	ENSMUSG00000064158.7	ENSMUST00000033100.5	1493	10	22	39	22	-39	multi-exon	FALSE	canonical	1	2	junction_4	3.72512324760894	16	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAATAAAGATTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	45271256	45276627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45271425_45272145_45272456_45272717_45272793_45273558_45273646_45274085_45274107_45274352_45274434_45274545_45274647_45274965_45275120_45275446_45275706_45276451
72892	chr11	-	417	3	NIC	ENSMUSG00000049755.15	novel	426	3	NA	NA	55	5	combination_of_known_splicesites	FALSE	canonical	3	6	junction_2	11.5	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTAAAGTATTCAACAGTC	NA	False	NA	NA	False	NA	NA	NA	58221102	58210558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_58210781_58213425_58213556_58221037
72893	chr5	+	702	1	NIC	ENSMUSG00000049686.15	novel	1482	3	NA	NA	14019	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	25	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTATGTGCGCACATGT	39	False	NA	NA	False	NA	NA	NA	123167419	123168121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_123167400_123168100
72894	chr11	+	2019	11	FSM	ENSMUSG00000020467.16	ENSMUST00000020759.12	2037	11	18	0	18	0	multi-exon	FALSE	canonical	0	0	junction_10	1.00498756211209	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCATGTTTGTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	28803221	28876743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_28803325_28804464_28804555_28817465_28817515_28817652_28818040_28860609_28860733_28864587_28864708_28865660_28865781_28866849_28866970_28871402_28871527_28871610_28871807_28876156
72897	chr15	-	1231	8	Antisense	novelGene_ENSMUSG00000036167.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATAGCGTCCCTCAGAC	678	False	NA	NA	False	NA	NA	NA	93387173	93308617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_93308676_93318173_93318372_93321894_93321951_93339376_93339631_93353327_93353410_93357550_93357671_93362983_93363127_93386853
72899	chr1	+	2063	14	Antisense	novelGene_ENSMUSG00000026674.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	41	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCTTGAGGGGAGGGGGA	NA	False	NA	NA	False	NA	NA	NA	169812601	169916509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_169812633_169814583_169814712_169815975_169816201_169818000_169818212_169822152_169822287_169823121_169823186_169825501_169825741_169829394_169829582_169831732_169831842_169832227_169832370_169832639_169832873_169834329_169834434_169863481_169863597_169916368
72900	chr15	-	1275	6	Antisense	novelGene_ENSMUSG00000039065.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGGGAGACCGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	31617676	31602276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_31602298_31603593_31603719_31606054_31606335_31608241_31608378_31609709_31609761_31617014
72905	chr13	-	959	1	ISM	ENSMUSG00000058093.14	ENSMUST00000012873.16	4835	4	19310	0	19248	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTTGGTGTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	67738516	67737557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_67737600_67738500
72907	chr7	-	961	3	ISM	ENSMUSG00000030518.18	ENSMUST00000133883.2	3842	4	5935	2634	5935	-2634	3prime_fragment	FALSE	canonical	1	1	junction_2	2.5	7	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAAGGCCTTTAACACT	NA	False	NA	NA	False	NA	NA	NA	64417465	64408494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_64409162_64411500_64411729_64417399
72909	chr13	-	633	2	FSM	ENSMUSG00000085634.3	ENSMUST00000132880.3	663	2	30	0	30	0	multi-exon	FALSE	canonical	3	19	junction_1	0	77	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTTTTTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	111686415	111658883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_111659245_111686143
72910	chr2	-	1614	9	ISM	ENSMUSG00000002108.11	ENSMUST00000111356.8	1955	10	1352	23	-939	8	3prime_fragment	TRUE	canonical	1	1	junction_1	1.19895788082818	7	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTTCTTCAGGGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	91024028	91014428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_91014828_91014999_91015095_91015286_91015401_91020529_91020630_91020806_91020987_91021083_91021293_91022133_91022401_91022904_91023088_91023961
72911	chr15	+	1083	2	ISM	ENSMUSG00000049653.6	ENSMUST00000230221.2	1664	5	16794	-538	16794	535	3prime_fragment	FALSE	canonical	1	2	junction_1	0	4	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGAACATGGGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	76169115	76177307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_76169255_76176363
72912	chr16	+	566	3	Intergenic	novelGene_3628	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGAGGGGCGGGTTTCATG	NA	False	NA	NA	False	NA	NA	NA	29664756	29668504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_29665070_29666489_29666606_29668367
72913	chrX	-	647	3	ISM	ENSMUSG00000063018.7	ENSMUST00000150671.2	885	4	15569	3	-6586	-3	3prime_fragment	FALSE	canonical	3	36	junction_1	10.5	226	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAAGTTACTTTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	7295813	7278347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_7278772_7290368_7290524_7295745
72915	chr1	+	896	3	NNC	ENSMUSG00000050122.20	novel	1636	8	NA	NA	6994	-16034	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7	50	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCCTCTCAAATATAAATA	NA	False	NA	NA	False	NA	NA	NA	37081782	37086696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37082066_37083844_37084290_37086528
72916	chr10	+	1254	7	Antisense	novelGene_ENSMUSG00000069520.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	71	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGCCAGGCCAGCAGGGA	NA	False	NA	NA	False	NA	NA	NA	115178323	115198095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_115178579_115179605_115179812_115182935_115183191_115183549_115183677_115195550_115195680_115197721_115197863_115197954
72917	chr8	+	986	2	NIC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	29	-15	combination_of_known_splicesites	FALSE	canonical	3	215	junction_1	0	610	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTTCCTGGTACCATC	NA	False	NA	NA	False	NA	NA	NA	73072905	73075485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_73072994_73074587
72919	chr2	-	1876	1	Intergenic	novelGene_2758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTCATTTACTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	157686036	157684160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_157684200_157686000
72920	chr10	-	1720	1	Intergenic	novelGene_3495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAGAGGTGGCCGTGAA	NA	False	NA	NA	False	NA	NA	NA	82194504	82192784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_82192800_82194500
72921	chr15	-	879	3	Fusion	ENSMUSG00000099467.2_ENSMUSG00000068348.5	novel	408	3	NA	NA	-103	367	multi-exon	FALSE	canonical	0	0	junction_2	38	703	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCTTTTGTTCTTTCAG	NA	False	NA	NA	False	NA	NA	NA	75169051	75107078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_-_75107668_75109440_75109558_75168878
72922	chr2	-	504	4	NNC	ENSMUSG00000018770.10	novel	714	5	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1758.90161432892	83	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	NA	False	NA	NA	NA	73741679	73738790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739023_73740203_73740286_73741298_73741405_73741595
72924	chr14	+	1295	5	FSM	ENSMUSG00000021918.11	ENSMUST00000226833.2	1252	5	-24	-19	-4	19	multi-exon	FALSE	canonical	3	44	junction_4	6.25999201277446	89	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCCGACTGTTCTTCCG	NA	False	NA	NA	False	NA	NA	NA	30673410	30681554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097
72926	chr7	-	435	3	ISM	ENSMUSG00000030615.13	ENSMUST00000207159.2	466	4	1588	-5	1588	5	3prime_fragment	FALSE	canonical	3	26	junction_2	378	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTGTCTGCAACATTAA	3360	False	NA	NA	False	NA	NA	NA	90104722	90099914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_90100144_90100750_90100866_90104631
72927	chr2	-	704	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	64	0	1	0	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32178016	32168827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
72929	chr13	-	441	4	NNC	ENSMUSG00000060739.9	novel	974	6	NA	NA	70	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	340.965622248865	9	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGGTCTTTAGTTTGGG	NA	False	NA	NA	False	NA	NA	NA	97274290	97267504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97267737_97268350_97268463_97272147_97272217_97274262
72930	chr7	+	843	3	FSM	ENSMUSG00000064264.15	ENSMUST00000071361.13	1182	3	322	17	262	-15	multi-exon	FALSE	canonical	3	407	junction_2	41.5	113	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGGCTCCGCATATGT	NA	False	NA	NA	False	NA	NA	NA	24206816	24215090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24206862_24209970_24210179_24214500
72931	chr13	+	621	3	NNC	ENSMUSG00000021534.9	novel	1826	3	NA	NA	8405	-1	intron_retention	FALSE	canonical	3	9	junction_1	4.5	42	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTAGCAGCTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	68753962	68761405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_68754010_68759279_68759397_68760948
72932	chr8	-	1075	4	NIC	ENSMUSG00000034416.19	novel	1716	8	NA	NA	7072	-1	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	9.84321537348893	17	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGGCATGTTCTTATT	4495	False	NA	NA	False	NA	NA	NA	117743762	117736062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_117736470_117740602_117740737_117741601_117741930_117743556
72933	chr8	+	1198	2	FSM	ENSMUSG00000086390.8	ENSMUST00000145343.2	984	2	-16	-198	-16	198	multi-exon	FALSE	canonical	2	2	junction_1	0	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGGTATTTTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	106863680	106865355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106863983_106864459
72934	chr16	+	511	1	NIC	ENSMUSG00000116762.2	novel	995	3	NA	NA	1778	-1102	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGTTCCAGACCTATTG	3697	False	NA	NA	False	NA	NA	NA	31328982	31329493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_31329000_31329500
72935	chr3	-	797	2	FSM	ENSMUSG00000053870.8	ENSMUST00000192959.2	686	2	1	-112	1	112	multi-exon	FALSE	canonical	3	25	junction_1	0	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGGCCAACATTCATCT	NA	False	NA	NA	False	NA	NA	NA	154799004	154796467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_154797196_154798935
72936	chr1	-	2161	1	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	6792	257	mono-exon	FALSE	NA	NA	NA	NA	NA	5	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACAAAACTTCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	130369794	130367633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_130367600_130369800
72938	chr19	-	1736	1	FSM	ENSMUSG00000102353.2	ENSMUST00000192635.2	1748	1	23	-11	23	11	mono-exon	FALSE	NA	NA	NA	NA	NA	13	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTCCATTGAACTCAAGT	NA	False	NA	NA	False	NA	NA	NA	37423081	37421345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_37421300_37423100
72939	chr7	-	1342	7	NNC	ENSMUSG00000038930.12	novel	2237	7	NA	NA	8	219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.629671188202	34	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAGAGTAAATCCAA	NA	False	NA	NA	False	NA	NA	NA	79973860	79966124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79966287_79966437_79966799_79967200_79967231_79968606_79968775_79968993_79969090_79970929_79971092_79973497
72940	chr11	+	748	4	NNC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	-72	4351	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	2.82842712474619	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAAGAGCCCCGGCCC	8742	False	NA	NA	False	NA	NA	NA	96142397	96160045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96142640_96154999_96155212_96155549_96155672_96159873
72941	chr7	+	1562	6	FSM	ENSMUSG00000030762.12	ENSMUST00000033023.10	1487	6	-99	24	-99	-6	multi-exon	FALSE	canonical	3	25	junction_2	2.57681974534503	152	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGGCTTAGCATTTCAT	4277	False	NA	NA	False	NA	NA	NA	123061414	123067203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_123061682_123061796_123062042_123063411_123063539_123064331_123064547_123065808_123065944_123066630
72942	chr4	+	596	5	FSM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	59	37	59	0	multi-exon	FALSE	canonical	3	977	junction_1	47.9446295219809	2062	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCGATAACATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	107737010	107744584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_107737143_107738089_107738149_107740264_107740376_107742113_107742197_107744373
72943	chr2	+	1466	1	Antisense	novelGene_ENSMUSG00000059742.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCTTGTTGGATTCTTTA	NA	False	NA	NA	False	NA	NA	NA	62524799	62526265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_62524800_62526300
72944	chr9	+	1682	2	NNC	ENSMUSG00000100002.3	novel	921	3	NA	NA	-6	-6400	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	15	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTCCAAGGTCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	25063403	25080457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_25063484_25078855
72945	chr12	-	1509	1	Intergenic	novelGene_4444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATACCAACAAGCCCAAGC	NA	False	NA	NA	False	NA	NA	NA	98749270	98747761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_98747800_98749300
72946	chr11	+	322	1	NIC	ENSMUSG00000085143.2	novel	630	3	NA	NA	18	-13728	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACAAGAAGTAAGTTATG	NA	False	NA	NA	False	NA	NA	NA	95201272	95201594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_95201300_95201600
72947	chr11	-	866	2	FSM	ENSMUSG00000045377.6	ENSMUST00000050140.6	1582	2	1	715	1	-715	multi-exon	FALSE	canonical	3	22	junction_1	0	86	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCACTCTGTGAATACAGG	NA	False	NA	NA	False	NA	NA	NA	69289059	69288059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69288708_69288841
72948	chr11	-	1110	6	ISM	ENSMUSG00000020775.14	ENSMUST00000142550.8	1403	8	3455	28	-693	-28	intron_retention	FALSE	canonical	3	777	junction_5	32.7389676074246	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATGTGAATAAAATACTTT	3955	False	NA	NA	False	NA	NA	NA	116026146	116022674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733
72949	chr7	-	553	4	ISM	ENSMUSG00000030838.21	ENSMUST00000176371.2	1865	20	29240	-202	696	-92	3prime_fragment	FALSE	canonical	0	0	junction_2	0.942809041582063	5	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGTCCTGCATCTCTCT	NA	False	NA	NA	False	NA	NA	NA	45850498	45844872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45845159_45846619_45846676_45847776_45847887_45850397
72950	chr2	-	1082	1	Intergenic	novelGene_2814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCACCAATTCAGAGTGC	NA	False	NA	NA	False	NA	NA	NA	172284383	172283301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_172283300_172284400
72951	chr1	-	1537	7	NIC	ENSMUSG00000025939.20	novel	1508	7	NA	NA	-1	2	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	195.295289241702	53	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGTCTGTTCTTAAATT	NA	False	NA	NA	False	NA	NA	NA	16689484	16611011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16612014_16614172_16614257_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
72954	chr5	+	500	4	NNC	ENSMUSG00000106918.4	novel	638	4	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1099.78674700548	18	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTTGTCTCTTAGAGGT	NA	False	NA	NA	False	NA	NA	NA	31771342	31779986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31771375_31772213_31772309_31773724_31773832_31779720
72955	chr11	+	1315	11	NIC	ENSMUSG00000020486.20	novel	1678	12	NA	NA	-6	-1	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	2	13	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTCAGGTGTCTCTGTAT	6999	False	NA	NA	False	NA	NA	NA	87469289	87481362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87469364_87474746_87474841_87475224_87475312_87475943_87476068_87479543_87479679_87479793_87479912_87480000_87480103_87480293_87480391_87480481_87480645_87480781_87480882_87481141
72956	chr7	+	956	7	NNC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_6	113.123334855762	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGGAGAAACCCTGT	9880	False	NA	NA	False	NA	NA	NA	49408862	49423729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048_49423188_49423503
72959	chr12	+	1413	1	ISM	ENSMUSG00000002803.15	ENSMUST00000165079.8	1975	5	1036	0	572	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAAGAACCAAATGTAG	NA	False	NA	NA	False	NA	NA	NA	112941137	112942550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_112941100_112942600
72960	chr13	+	899	1	Antisense	novelGene_ENSMUSG00000055560.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTTTGTAGACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	67553843	67554742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_67553800_67554700
72961	chr9	-	210	2	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	2063	53	-597	5prime_fragment	FALSE	canonical	3	9075	junction_1	0	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCAAGTATAAGGCAAAAGG	7153	False	NA	NA	False	NA	NA	NA	78388953	78387793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78387971_78388920
72962	chr7	-	171	1	Intergenic	novelGene_3006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAAATGCAACGTGA	NA	False	NA	NA	False	NA	NA	NA	98899735	98899564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_98899600_98899700
72963	chr18	-	870	7	ISM	ENSMUSG00000073599.11	ENSMUST00000097618.10	1114	9	4230	4	29	-2	3prime_fragment	FALSE	canonical	2	3	junction_4	1.86338998124982	36	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCCAATTTCTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	35850314	35846142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205
72964	chr3	+	1628	5	ISM	ENSMUSG00000046280.10	ENSMUST00000050401.6	5733	6	2792	3353	2792	-3353	3prime_fragment	FALSE	canonical	3	46	junction_3	3.89711431702997	12	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTTTCTTTGTGGTTTT	5671	False	NA	NA	False	NA	NA	NA	89741468	89762788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89741578_89756674_89756981_89758915_89759058_89759673_89759794_89761837
72966	chr5	+	649	2	FSM	ENSMUSG00000029642.12	ENSMUST00000050970.4	1196	2	536	11	22	-11	multi-exon	FALSE	canonical	3	451	junction_1	0	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTAAACTAGTTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	147014395	147015885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_147014504_147015344
72967	chr9	-	2248	11	NNC	ENSMUSG00000023249.16	novel	2495	11	NA	NA	51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2.9	1	143	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCTGTCCGACTGAAT	NA	False	NA	NA	False	NA	NA	NA	106353744	106347825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351720_106351878_106352068_106352221_106352348_106352997_106353182_106353696
72970	chr13	+	1766	7	ISM	ENSMUSG00000064140.4	ENSMUST00000226039.2	1999	10	9393	-90	-3235	90	3prime_fragment	FALSE	canonical	0	0	junction_1	0.5	6	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAACCCTTTCAAATGTG	NA	False	NA	NA	False	NA	NA	NA	23963288	23975601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_23963385_23966423_23966972_23969859_23969956_23972193_23972425_23973317_23973341_23973440_23973554_23974942
72972	chr4	+	1010	1	Intergenic	novelGene_2017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACCTTATTAATGTCTT	NA	False	NA	NA	False	NA	NA	NA	145162296	145163306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_145162300_145163300
72973	chr16	+	1031	6	FSM	ENSMUSG00000022971.19	ENSMUST00000134491.9	807	6	-47	-177	11	0	multi-exon	FALSE	canonical	0	0	junction_3	21.5462293684997	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	NA	False	NA	NA	NA	91169681	91190928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91184831_91185005_91188608_91188767_91190644
72974	chr4	+	795	3	Antisense	novelGene_ENSMUSG00000087343.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	3	24	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGAGGCCTGTTTGTCTTG	8217	False	NA	NA	False	NA	NA	NA	134172774	134176568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_134172869_134173675_134173823_134176014
72977	chr7	-	1325	4	NNC	ENSMUSG00000092367.2	novel	556	7	NA	NA	-3928	-3734	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	12.4988888395018	25	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	NA	False	NA	NA	NA	27060772	27055807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27056876_27059167_27059211_27059359_27059534_27060732
72978	chr1	+	1271	2	NNC	ENSMUSG00000110712.2	novel	1238	2	NA	NA	8	1006	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTAATATTGTAAGATC	NA	False	NA	NA	False	NA	NA	NA	72680354	72683128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_72681432_72682934
72979	chr9	+	371	3	NNC	ENSMUSG00000039016.6	novel	518	2	NA	NA	94	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	670.5	9	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTTCTTCTAAATCCC	8907	False	NA	NA	False	NA	NA	NA	50515303	50516620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_50515340_50516232_50516371_50516423
72980	chr17	+	611	1	FSM	ENSMUSG00000062619.7	ENSMUST00000071430.7	762	1	151	0	151	0	mono-exon	FALSE	NA	NA	NA	NA	NA	345	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAACTTGGCAGTCGTT	NA	False	NA	NA	False	NA	NA	NA	47083711	47084322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47083700_47084300
72982	chr19	+	1390	3	FSM	ENSMUSG00000054200.8	ENSMUST00000067098.8	1401	3	10	1	10	-1	multi-exon	FALSE	canonical	2	4	junction_1	0	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAATCTCTATCTTGTG	NA	False	NA	NA	False	NA	NA	NA	38085528	38102710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_38086142_38095829_38095959_38102062
72983	chr17	-	1003	2	FSM	ENSMUSG00000085705.2	ENSMUST00000150889.2	1001	2	-10	8	0	-8	multi-exon	FALSE	canonical	1	1	junction_1	0	13	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTAGTCCAATAGTGCTAT	NA	False	NA	NA	False	NA	NA	NA	13903759	13899763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_13900447_13903439
72984	chr17	-	975	6	FSM	ENSMUSG00000024391.8	ENSMUST00000025249.7	1013	6	38	0	38	0	multi-exon	FALSE	canonical	3	28	junction_5	5.65685424949238	163	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGGGTTTTGTCTGCA	NA	False	NA	NA	False	NA	NA	NA	35350988	35347972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35348112_35349055_35349155_35349383_35349483_35349814_35349895_35350170_35350326_35350585
72985	chr4	+	1229	1	Intergenic	novelGene_1858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTGTCCTAAAACTCCC	3592	False	NA	NA	False	NA	NA	NA	55354920	55356149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_55354900_55356100
72987	chr14	-	855	3	NNC	ENSMUSG00000042354.8	novel	1765	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	540.5	19	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	30740971	30734389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_30734592_30734679_30734890_30740528
72988	chr2	+	593	2	Genic_Genomic	ENSMUSG00000098024.2	novel	497	2	NA	NA	-289	-1	multi-exon	FALSE	canonical	3	6	junction_1	0	37	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTGGTAGTAATTGTGT	NA	False	NA	NA	False	NA	NA	NA	126517546	126525724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_126517737_126525321
72989	chr14	+	1295	3	ISM	ENSMUSG00000040640.12	ENSMUST00000211087.2	1356	4	-18	123421	-18	-12	5prime_fragment	FALSE	canonical	3	15	junction_1	1	2	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGAGTGGTGAATTTTT	2376	False	NA	NA	False	NA	NA	NA	27344434	27375747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_27344572_27350368_27350423_27374643
72990	chr16	+	712	4	NIC	ENSMUSG00000080717.11	novel	546	5	NA	NA	-206	2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	57.6945982451275	102	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTAGCTACATTT	NA	False	NA	NA	False	NA	NA	NA	97798308	97832638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_97798637_97809828_97809956_97810143_97810205_97832442
72991	chr6	-	1439	4	Intergenic	novelGene_4207	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0.816496580927726	10	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGATCTTGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	89813474	89800140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_89801150_89802451_89802612_89812876_89812928_89813255
72993	chr6	-	1217	6	ISM	ENSMUSG00000034312.16	ENSMUST00000101153.10	8036	14	26358	15511	4525	-1190	internal_fragment	FALSE	canonical	3	34	junction_3	3.07245829914744	4	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACTCTGCTGTTCTTCTG	3329	False	NA	NA	False	NA	NA	NA	90667153	90648580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_90648614_90648961_90649102_90653729_90653897_90655005_90655129_90657472_90657635_90666561
72994	chr6	-	844	4	ISM	ENSMUSG00000034312.16	ENSMUST00000101153.10	8036	14	46057	11471	-1821	2850	internal_fragment	FALSE	canonical	3	37	junction_3	6.23609564462324	1	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGCTGGGCCTTTTGCCC	NA	False	NA	NA	False	NA	NA	NA	90647454	90644540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_90645059_90645622_90645785_90646267_90646368_90647390
72995	chr13	+	1702	1	Intergenic	novelGene_1346	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCCAGCCTGTCCATAG	NA	False	NA	NA	False	NA	NA	NA	38832466	38834168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_38832500_38834200
72997	chr2	+	1599	2	NIC	ENSMUSG00000068062.4	novel	1999	5	NA	NA	-12880	-3	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	0	12	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGATGGAGCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	152203787	152217241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152203865_152215719
72998	chr8	-	1556	8	ISM	ENSMUSG00000063605.6	ENSMUST00000077955.6	2304	9	4921	0	4344	0	3prime_fragment	FALSE	canonical	2	12	junction_2	2.72554057547699	5	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGAGTTCTGAAAGTGTA	NA	False	NA	NA	False	NA	NA	NA	95639805	95629496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_95630020_95631884_95631989_95632559_95632731_95634342_95634553_95634901_95635019_95636371_95636481_95638055_95638283_95639710
72999	chr1	-	1537	1	FSM	ENSMUSG00000026024.15	ENSMUST00000188469.2	2783	1	-1330	2576	-1330	-2576	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCCTTCTCCTTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	59259615	59258078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_59258100_59259600
73000	chr1	-	527	3	Intergenic	novelGene_352	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_2	34	152	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGACATGGCTTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	21326419	21323514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_21323669_21324392_21324563_21326216
73001	chr9	-	1192	2	FSM	ENSMUSG00000097535.2	ENSMUST00000180870.2	1730	2	672	-134	672	134	multi-exon	FALSE	canonical	0	0	junction_1	0	6	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACATGGTGGCTCACAA	4453	False	NA	NA	False	NA	NA	NA	20948406	20945451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20946267_20948029
73002	chr8	+	996	1	Intergenic	novelGene_1573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAAGCCTGTCTTTCTGG	8741	False	NA	NA	False	NA	NA	NA	11961426	11962422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_11961400_11962400
73003	chr17	+	428	3	NIC	ENSMUSG00000002379.8	novel	545	4	NA	NA	3	5	combination_of_known_splicesites	FALSE	canonical	3	35	junction_2	1296	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGGCAGGCTTGCTGCA	NA	False	NA	NA	False	NA	NA	NA	57024769	57029146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57024943_57028034_57028128_57028984
73004	chr11	+	893	2	FSM	ENSMUSG00000087497.8	ENSMUST00000135037.8	901	2	6	2	6	-2	multi-exon	FALSE	canonical	3	11	junction_1	0	53	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTTGTTTCATGTTTCT	4240	False	NA	NA	False	NA	NA	NA	63970315	63974083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_63970604_63973478
73005	chr8	-	940	1	Intergenic	novelGene_1613	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGTGCAAATAAGCTTGT	5144	False	NA	NA	False	NA	NA	NA	33881607	33880667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_33880700_33881600
73006	chr6	-	1157	3	Antisense	novelGene_ENSMUSG00000059689.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	145	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGAGCCCGCGCGCGCCCC	NA	False	NA	NA	False	NA	NA	NA	117822913	117818141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_117818229_117820212_117820352_117821982
73007	chr5	-	474	1	Intergenic	novelGene_797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAGGTAAGAAGGTATCA	NA	False	NA	NA	False	NA	NA	NA	108834573	108834099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_108834100_108834600
73008	chr3	-	1935	4	FSM	ENSMUSG00000001420.14	ENSMUST00000001456.11	2406	4	49	422	-1	-30	multi-exon	FALSE	canonical	3	8	junction_3	5.18544972870135	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCTGTGAGTATGTAATAA	NA	False	NA	NA	False	NA	NA	NA	88241762	88236383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241688
73010	chr19	-	1121	1	Genic_Genomic	ENSMUSG00000061451.14	novel	NA	NA	NA	NA	161	8	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTTTCTCCCTTATCAAA	NA	False	NA	NA	False	NA	NA	NA	5121999	5120878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_5120900_5122000
73013	chr16	+	1404	1	ISM	ENSMUSG00000068284.15	ENSMUST00000119746.8	12708	7	52801	15	52650	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGCATTGTGAATTCTC	NA	False	NA	NA	False	NA	NA	NA	44046409	44047813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_44046400_44047800
73016	chr6	+	767	1	Intergenic	novelGene_4135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTCACAACTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	31352169	31352936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_31352200_31352900
73018	chrX	-	986	4	NNC	ENSMUSG00000079509.11	novel	879	4	NA	NA	596	-3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	51.0489960724009	16	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACCTTGTCCAGGTGTG	NA	False	NA	NA	False	NA	NA	NA	93165910	93141782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93142459_93145896_93145987_93157801_93157870_93165758
73021	chr5	-	1269	7	ISM	ENSMUSG00000036526.9	ENSMUST00000085786.7	4107	25	118206	16	-171	-14	3prime_fragment	FALSE	canonical	1	3	junction_6	4.41273409829124	31	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTCTCCTTTGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	140868131	140858760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_140859285_140860095_140860212_140862151_140862277_140863717_140863898_140866052_140866189_140867756_140867853_140868039
73024	chr2	+	920	1	Genic_Genomic	ENSMUSG00000008333.13	novel	NA	NA	NA	NA	-27	-1711	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGGTAAACAAACACACACA	2053	False	NA	NA	False	NA	NA	NA	142905023	142905943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_142905000_142905900
73027	chr19	+	284	1	Intergenic	novelGene_1234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGTTTTAAGATCAATTT	5006	False	NA	NA	False	NA	NA	NA	24202571	24202855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_24202600_24202900
73028	chr9	+	2573	1	Antisense	novelGene_ENSMUSG00000025894.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCAACCTGTACCTCAG	NA	False	NA	NA	False	NA	NA	NA	4306145	4308718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_4306100_4308700
73029	chr15	-	706	7	NNC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	254.973854868821	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTGTGGAATAGTGAC	NA	False	NA	NA	False	NA	NA	NA	93296188	93283990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_93284104_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
73030	chr2	+	280	1	Intergenic	novelGene_2602	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAATCTTGCTACTTAA	NA	False	NA	NA	False	NA	NA	NA	31421647	31421927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_31421600_31421900
73031	chr2	-	484	2	NIC	ENSMUSG00000036504.7	novel	937	3	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	0	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5528	False	NA	NA	False	NA	NA	NA	25464908	25463441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25463712_25464694
73032	chr17	+	606	6	NNC	ENSMUSG00000023967.10	novel	884	6	NA	NA	14	-165	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	443.769039028186	20	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTGAAGATGATGCATTA	NA	False	NA	NA	False	NA	NA	NA	46421935	46439554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436667_46439430
73033	chr16	-	779	8	FSM	ENSMUSG00000022938.9	ENSMUST00000231414.2	806	8	19	8	19	-8	multi-exon	FALSE	canonical	3	14	junction_7	10.770329614269	80	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTCAGCTGAATGTCAC	NA	False	NA	NA	False	NA	NA	NA	97313711	97272297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313657
73035	chrX	-	1673	1	Antisense	novelGene_ENSMUSG00000079481.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGGCTGCTGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	101122781	101121108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_101121100_101122800
73039	chr16	-	1117	7	FSM	ENSMUSG00000022822.17	ENSMUST00000096199.5	1136	7	14	5	-5	-5	multi-exon	FALSE	canonical	2	5	junction_1	91.9287163452688	53	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTCCTGGTATTTAC	NA	False	NA	NA	False	NA	NA	NA	20245090	20219515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20219822_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
73042	chr5	-	552	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-27	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.5	276	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTGTGTCGCCTCCTA	3450	False	NA	NA	False	NA	NA	NA	143151533	143150536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143150848_143151184_143151305_143151412
73043	chr7	+	856	5	FSM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	38	754	-13	-179	multi-exon	FALSE	canonical	3	144	junction_2	66.2740522376593	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGGCGCCACCGCGGCA	3005	False	NA	NA	False	NA	NA	NA	6175549	6192666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6175574_6176980_6177101_6186860_6187202_6191132_6191242_6192404
73044	chr7	+	448	1	ISM	ENSMUSG00000044876.16	ENSMUST00000108567.9	5104	5	17463	3419	6369	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	38	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGTGACTGACTCAGT	1717	False	NA	NA	False	NA	NA	NA	6192943	6193391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_6192900_6193400
73045	chrX	+	710	1	Intergenic	novelGene_3879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTCCTTCCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	8119017	8119727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_8119000_8119700
73047	chr8	+	1124	6	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	-4	35	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	150.720403396488	2	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTTTGGATTGATGTCAG	NA	False	NA	NA	False	NA	NA	NA	96442538	96445534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_96442592_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
73049	chr6	-	617	3	Intergenic	novelGene_4242	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	0	37	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGTTATGTCACATAAA	NA	False	NA	NA	False	NA	NA	NA	124467704	124464511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_124464876_124467354_124467501_124467597
73052	chr5	-	407	1	Intergenic	novelGene_730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	76380153	76379746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_76379700_76380200
73053	chr11	+	482	4	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	4054	0	-585	0	3prime_fragment	FALSE	canonical	3	41	junction_3	1.69967317119759	254	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTAATCCCTCCGTTGATT	NA	False	NA	NA	False	NA	NA	NA	104475204	104478035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_104475439_104475762_104475841_104476552_104476598_104477910
73054	chr17	+	553	2	NNC	ENSMUSG00000117466.2	novel	2452	2	NA	NA	850	-12480	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCACTCCGCGTGTTCAT	2673	False	NA	NA	False	NA	NA	NA	88133350	88133945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88133451_88133492
73056	chr13	-	928	1	ISM	ENSMUSG00000056222.16	ENSMUST00000185502.7	4614	12	481252	3	480564	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCACGTGAATGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	57574837	57573909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_57573900_57574800
73057	chr17	-	1488	1	Antisense	novelGene_ENSMUSG00000089633.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAGTACCTGCAAGCGAA	NA	False	NA	NA	False	NA	NA	NA	10693532	10692044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_10692000_10693500
73058	chr10	+	1385	1	NIC	ENSMUSG00000019777.17	novel	2005	14	NA	NA	2298	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTAATTATCTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	36876465	36877850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_36876500_36877800
73059	chr14	+	1587	13	ISM	ENSMUSG00000021922.18	ENSMUST00000120269.11	3531	23	4171	4470	4126	-3961	internal_fragment	FALSE	canonical	0	0	junction_1	0.74535599249993	3	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGGTAAGCATTCCTCC	4686	False	NA	NA	False	NA	NA	NA	30612603	30619840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30612735_30613337_30613455_30613660_30613830_30613909_30614036_30614222_30614405_30614492_30614679_30616984_30617125_30617360_30617516_30617767_30617798_30618059_30618120_30618514_30618728_30619479_30619531_30619813
73060	chr9	-	1461	2	ISM	ENSMUSG00000048537.17	ENSMUST00000129806.2	612	6	9142	-1309	7728	-15	3prime_fragment	FALSE	canonical	3	37	junction_1	0	25	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATTTTGACTATGTACAT	5357	False	NA	NA	False	NA	NA	NA	44600000	44597621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_44598996_44599913
73061	chr2	-	936	2	NNC	ENSMUSG00000078956.4	novel	340	3	NA	NA	-36278	752	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	0	41	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTATCTGTGTACAAGT	NA	False	NA	NA	False	NA	NA	NA	160498169	160409546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_160410363_160498049
73063	chr6	-	470	1	Intergenic	novelGene_4248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGGGCAGCCTGGAATT	NA	False	NA	NA	False	NA	NA	NA	125108727	125108257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_125108300_125108700
73064	chr13	-	1643	1	Intergenic	novelGene_1504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAAAGCCCCAAATCCAC	NA	False	NA	NA	False	NA	NA	NA	95005206	95003563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_95003600_95005200
73065	chr10	+	845	6	ISM	ENSMUSG00000020169.5	ENSMUST00000020378.5	2719	10	6757	16000	6757	-16000	internal_fragment	FALSE	canonical	0	0	junction_3	1.2	1	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAGCATGTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	116828975	116844945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_116829203_116838424_116838580_116839789_116839868_116840285_116840439_116843492_116843574_116844794
73069	chr5	+	501	1	Intergenic	novelGene_665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCTTATATCCCAATGAAT	NA	False	NA	NA	False	NA	NA	NA	22769622	22770123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_22769600_22770100
73072	chrX	-	2079	1	Intergenic	novelGene_3882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	99	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGCCAGGCATTTCCCAA	NA	False	NA	NA	False	NA	NA	NA	9358854	9356775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_9356800_9358900
73076	chr15	-	441	2	Intergenic	novelGene_3288	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	45	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATAACCCTGAGAACT	NA	False	NA	NA	False	NA	NA	NA	47033332	47022223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_47022513_47033180
73077	chr7	-	1647	6	Antisense	novelGene_ENSMUSG00000058966.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	49	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAACTTGCAAAAGATGAA	NA	False	NA	NA	False	NA	NA	NA	126429387	126417470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_126417562_126418989_126419127_126424182_126424267_126426637_126426872_126427971_126428067_126428381
73078	chr7	+	1327	9	FSM	ENSMUSG00000002204.10	ENSMUST00000002274.10	1560	9	211	22	159	-22	multi-exon	FALSE	canonical	1	2	junction_5	2.82842712474619	23	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAACAAATTAAAAAAAAA	2753	False	NA	NA	False	NA	NA	NA	44222014	44236264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44222114_44230627_44230764_44230844_44230969_44231106_44231226_44231765_44231966_44234422_44234546_44234642_44234788_44235137_44235237_44235982
73079	chr2	-	636	1	NIC	ENSMUSG00000044627.12	novel	919	6	NA	NA	310	-3709	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCCAAATGACCTCCTCA	NA	False	NA	NA	False	NA	NA	NA	32177637	32177001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_32177000_32177600
73081	chr3	-	1564	2	FSM	ENSMUSG00000044864.17	ENSMUST00000094300.4	1944	2	376	4	376	-4	multi-exon	FALSE	canonical	3	44	junction_1	0	10	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTTCCTGTCCACTAAC	NA	False	NA	NA	False	NA	NA	NA	38509330	38506231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_38506655_38508189
73082	chr17	+	1782	1	Intergenic	novelGene_119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	76	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATGTTTTTACAGGAGAA	NA	False	NA	NA	False	NA	NA	NA	30440540	30442322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_30440500_30442300
73083	chr4	-	2620	19	ISM	ENSMUSG00000020220.17	ENSMUST00000020441.13	15665	68	69389	109113	-29327	-11771	internal_fragment	TRUE	canonical	2	8	junction_16	4.73918521933991	1	77	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATAATAAATCATCTCACA	NA	False	NA	NA	False	NA	NA	NA	144847847	144808308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_144808382_144811861_144812005_144813273_144813401_144813694_144813887_144814760_144815009_144818431_144818643_144818774_144818926_144821393_144821442_144822755_144822892_144824580_144824734_144826534_144826641_144832368_144832492_144833499_144833641_144835074_144835165_144837401_144837612_144841276_144841352_144842002_144842214_144844118_144844275_144847821
73084	chr3	+	719	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10897	-3	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	6.5	137	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAATGTTTGTGGGAAGA	NA	False	NA	NA	False	NA	NA	NA	30712931	30726577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30713166_30714049_30714247_30726289
73085	chr7	+	1138	1	NIC	ENSMUSG00000091474.3	novel	514	3	NA	NA	12	-2992	mono-exon	FALSE	NA	NA	NA	NA	NA	7	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTTTTGAATAGAA	NA	False	NA	NA	False	NA	NA	NA	41248759	41249897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_41248800_41249900
73086	chr8	+	1268	5	FSM	ENSMUSG00000056820.8	ENSMUST00000212603.2	2169	5	16	885	16	-885	multi-exon	FALSE	canonical	3	396	junction_1	23.7631542519086	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAGATTTGCCAAAAAGC	5262	False	NA	NA	False	NA	NA	NA	125739803	125756275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506
73090	chr4	-	925	2	Intergenic	novelGene_2003	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTATGTACCACCACACG	8843	False	NA	NA	False	NA	NA	NA	141079376	141078198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_141078963_141079215
73091	chr5	-	741	4	ISM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	8042	1	2879	-1	intron_retention	FALSE	canonical	3	197	junction_1	15.6276108929747	5	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCCTTGTGGTCATTGT	NA	False	NA	NA	False	NA	NA	NA	24798968	24797620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634
73093	chr14	-	599	3	FSM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	20	1953	20	-30	multi-exon	FALSE	canonical	3	1591	junction_2	40	1075	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAGGATCAATAAATGG	8547	False	NA	NA	False	NA	NA	NA	20443682	20441324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20441529_20441960_20442222_20443548
73094	chr11	+	1486	1	NIC	ENSMUSG00000036309.15	novel	642	6	NA	NA	0	-4902	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCCCCTTTCTTGAAGC	439	False	NA	NA	False	NA	NA	NA	52122863	52124349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_52122900_52124300
73096	chr4	-	1550	1	Intergenic	novelGene_1838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACACCAACCCCAACTAC	NA	False	NA	NA	False	NA	NA	NA	45520531	45518981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_45519000_45520500
73097	chr10	+	399	1	Intergenic	novelGene_3507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTTAAAAAGACACATA	NA	False	NA	NA	False	NA	NA	NA	93637888	93638287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_93637900_93638300
73099	chr6	+	1337	3	NNC	ENSMUSG00000054641.11	novel	4477	8	NA	NA	42452	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGGACTCTGAGGGAAGT	NA	False	NA	NA	False	NA	NA	NA	60963913	60966346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_60963933_60964057_60964211_60965181
73100	chr13	+	500	2	FSM	ENSMUSG00000112935.2	ENSMUST00000222598.2	1198	2	695	3	681	-3	multi-exon	FALSE	canonical	1	2	junction_1	0	124	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTGTCCATTATATCAA	NA	False	NA	NA	False	NA	NA	NA	65528837	65529908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_65528956_65529526
73101	chr2	+	720	3	NNC	ENSMUSG00000086813.2	novel	1939	4	NA	NA	1830	5017	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	2	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAGCAATCAGGGAAGACA	NA	False	NA	NA	False	NA	NA	NA	75609361	75617667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75609426_75611054_75611310_75617266
73104	chr3	+	1232	6	FSM	ENSMUSG00000028148.12	ENSMUST00000029794.11	1251	6	17	2	17	0	multi-exon	FALSE	canonical	0	0	junction_3	1.01980390271856	13	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTTAGTTGATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	94249422	94254657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94249689_94250561_94250764_94251715_94251855_94253455_94253567_94253854_94253980_94254268
73106	chr8	+	372	3	Antisense	novelGene_ENSMUSG00000031954.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGCGAAGCTAGATATAG	NA	False	NA	NA	False	NA	NA	NA	112495102	112580890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112495272_112571759_112571841_112580768
73107	chrX	+	2366	3	NNC	ENSMUSG00000082354.2	novel	820	2	NA	NA	-377	2103	intron_retention	FALSE	canonical	0	0	junction_1	0	2	57	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTCTGTTGTTTCAC	NA	False	NA	NA	False	NA	NA	NA	107448916	107452477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_107448987_107449207_107451196_107452169
73108	chr13	-	1252	1	Genic_Genomic	ENSMUSG00000084217.3	novel	NA	NA	NA	NA	-844	-2448	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGTTTTCAGACTTTTA	NA	False	NA	NA	False	NA	NA	NA	111861712	111860460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_111860500_111861700
73109	chr10	-	1687	9	NNC	ENSMUSG00000034602.16	novel	3978	23	NA	NA	18	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	45.0317596258463	1	63	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGACAGTTCTGTATAAA	8101	False	NA	NA	False	NA	NA	NA	122849318	122831082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_122831739_122835563_122835647_122838600_122838806_122841868_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122846398_122846543_122849272
73110	chr19	-	466	1	NIC	ENSMUSG00000024913.17	novel	5161	23	NA	NA	30499	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCATTCCTTTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	3635293	3634827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_3634800_3635300
73111	chrUn_MU069435v1	+	247	3	Intergenic	novelGene_4775	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	139	junction_1	109.5	284	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTAGCAGTTGTAGGACA	NA	False	NA	NA	False	NA	NA	NA	3310	7362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_3351_3591_3670_7233
73112	chr11	-	1094	6	ISM	ENSMUSG00000020882.18	ENSMUST00000107561.9	1778	12	7746	222	1925	-44	3prime_fragment	FALSE	canonical	3	80	junction_5	11.0453610171873	22	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGGGAAGAGCTTTATT	NA	False	NA	NA	False	NA	NA	NA	97901452	97895794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121
73113	chr9	-	356	3	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	10727	-100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	693	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATCCTGTGTATGTTTG	NA	False	NA	NA	False	NA	NA	NA	70318102	70315073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_70315183_70317462_70317544_70317936
73114	chr17	+	1632	1	NIC	ENSMUSG00000014763.9	novel	4420	11	NA	NA	44	-10930	mono-exon	FALSE	NA	NA	NA	NA	NA	4	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAATAATAACTTAATA	NA	False	NA	NA	False	NA	NA	NA	15616553	15618185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15616600_15618200
73118	chr1	+	1009	6	FSM	ENSMUSG00000026649.15	ENSMUST00000151340.8	793	6	-47	-169	24	6	multi-exon	FALSE	canonical	0	0	junction_1	4.40908153700972	32	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGACCTGGGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	170941510	170954517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_170941666_170950614_170950763_170952602_170952666_170952838_170952920_170953602_170953780_170954132
73119	chr15	+	1023	6	FSM	ENSMUSG00000022546.6	ENSMUST00000229140.2	982	6	-15	-26	-15	0	multi-exon	FALSE	canonical	3	10	junction_4	4.40908153700972	100	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGACTCACCTGACTG	5974	False	NA	NA	False	NA	NA	NA	76582395	76583874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76582583_76582655_76582793_76582914_76583090_76583195_76583352_76583435_76583549_76583619
73120	chr1	+	1823	1	FSM	ENSMUSG00000101849.2	ENSMUST00000189147.2	1849	1	11	15	11	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGCTAAGTCCCCTTAAGAA	NA	False	NA	NA	False	NA	NA	NA	77491927	77493750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_77491900_77493800
73122	chr16	+	2205	1	Intergenic	novelGene_3587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGAAACTTCCCAAACCTC	NA	False	NA	NA	False	NA	NA	NA	8973756	8975961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_8973800_8976000
73123	chr9	+	614	6	ISM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	35811	66	-17580	27	3prime_fragment	FALSE	canonical	3	695	junction_2	16.8451773513965	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGCAAACTGAGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	110521381	110540608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
73124	chr2	-	936	5	ISM	ENSMUSG00000033256.15	ENSMUST00000048635.13	1431	6	7323	266	81	-30	3prime_fragment	TRUE	canonical	3	69	junction_2	31.0191473125874	25	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCACCGAGGAGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	122189986	122179638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_122180021_122184245_122184366_122184509_122184679_122187563_122187771_122189928
73125	chr16	+	1396	1	FSM	ENSMUSG00000041378.3	ENSMUST00000043577.3	1416	1	20	0	20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTCCTGTCCTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	18595616	18597012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18595600_18597000
73126	chr7	+	1204	5	ISM	ENSMUSG00000094152.6	ENSMUST00000213347.2	2865	13	26973	8	-92	-6	3prime_fragment	FALSE	canonical	1	1	junction_2	6.59545297913646	51	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCAGACTGCGTGAGGCT	NA	False	NA	NA	False	NA	NA	NA	44917481	44922783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44917623_44917871_44918074_44918196_44918357_44921914_44922078_44922245
73127	chr11	-	638	2	Intergenic	novelGene_2236	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	23	junction_1	0	87	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATATTGTCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	22560584	22550335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_22550607_22560217
73128	chr18	-	1706	1	Intergenic	novelGene_4510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCACTGGCGAGTCATT	NA	False	NA	NA	False	NA	NA	NA	13001891	13000185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_13000200_13001900
73131	chr11	+	951	1	Intergenic	novelGene_2398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGCATAGCATTTCGCTT	2687	False	NA	NA	False	NA	NA	NA	69647860	69648811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_69647900_69648800
73133	chr2	+	542	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	93	87	43	-87	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGGTCAAACGGAACACG	NA	False	NA	NA	False	NA	NA	NA	25447951	25452007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
73134	chr5	-	1484	1	Intergenic	novelGene_838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCCAGATCTACCCCTAGG	NA	False	NA	NA	False	NA	NA	NA	116067749	116066265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_116066300_116067700
73135	chr3	-	921	1	Intergenic	novelGene_3142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACTACAGCGCTCAG	NA	False	NA	NA	False	NA	NA	NA	84721567	84720646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_84720600_84721600
73136	chr13	-	921	2	NNC	ENSMUSG00000090907.2	novel	923	2	NA	NA	6054	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAACCAGGAGTCAGAATAAA	NA	False	NA	NA	False	NA	NA	NA	92557678	92551556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_92552356_92557556
73137	chr14	-	442	3	NNC	ENSMUSG00000043681.6	novel	408	3	NA	NA	-6919	0	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	1267.5	320	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	34084309	34073837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_34074035_34075654_34075718_34084127
73138	chr16	-	458	4	NIC	ENSMUSG00000014301.14	novel	596	5	NA	NA	-9	-10	combination_of_known_splicesites	FALSE	canonical	3	48	junction_3	586.024648704207	105	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTGCATATGTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	4442809	4434337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_4434498_4434676_4434743_4434989_4435127_4442714
73139	chr7	+	705	1	ISM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	1481	0	1030	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGGTTCTTACTTGCA	4400	False	NA	NA	False	NA	NA	NA	5056017	5056722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_5056000_5056700
73140	SIRV6	+	266	3	ISM	SIRV6A	SIRV607	574	4	589	1	416	-1	3prime_fragment	FALSE	canonical	0	0	junction_2	7531.5	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCTGCAGTCAAGTCGTA	NA	False	NA	NA	False	NA	NA	NA	1719	2539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV6_+_1736_1845_2027_2470
73141	chr2	-	561	4	NIC	ENSMUSG00000076437.12	novel	747	4	NA	NA	-4	-40	combination_of_known_junctions	FALSE	canonical	1	43	junction_2	1010.8850907332	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTTTCAATTGTTTAATA	408	False	NA	NA	False	NA	NA	NA	84501002	84499604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84499742_84500330_84500461_84500616_84500735_84500826
73144	chr9	-	913	3	NNC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	-27	-649	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	25.5	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAAAATTATTTGCCT	NA	False	NA	NA	False	NA	NA	NA	21150136	21148067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21148247_21148366_21149053_21150088
73146	chr6	+	701	4	NIC	ENSMUSG00000030264.15	novel	649	3	NA	NA	3	-21	combination_of_known_junctions	FALSE	canonical	3	72	junction_3	301.439877919296	228	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGATTTTTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	113023278	113027977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113023352_113024375_113024666_113026299_113026378_113027717
73147	chr8	+	803	1	FSM	ENSMUSG00000071076.9	ENSMUST00000095267.8	1667	1	864	0	864	0	mono-exon	FALSE	NA	NA	NA	NA	NA	172	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTGTCCGCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	71152462	71153265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71152500_71153300
73148	chr7	-	1073	4	Antisense	novelGene_ENSMUSG00000054169.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTATCTGCCCTGCT	NA	False	NA	NA	False	NA	NA	NA	24481791	24476646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_24476755_24477537_24477921_24480300_24480649_24481557
73149	chr8	-	1231	8	NNC	ENSMUSG00000031897.10	novel	1311	8	NA	NA	19	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	111.216648291265	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTTGGAATGAGGGTG	NA	False	NA	NA	False	NA	NA	NA	106665057	106662411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664379_106664586
73150	chr7	+	2033	1	Antisense	novelGene_ENSMUSG00000101609.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCTCCTAGCGACAACG	NA	False	NA	NA	False	NA	NA	NA	142848243	142850276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_142848200_142850300
73152	chr9	-	1088	2	ISM	ENSMUSG00000111673.2	ENSMUST00000216803.2	706	3	23379	-531	23379	531	3prime_fragment	FALSE	canonical	2	3	junction_1	0	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGAATCTTTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	30897980	30896731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_30897758_30897918
73153	chr11	+	590	6	FSM	ENSMUSG00000018449.13	ENSMUST00000167509.2	519	6	40	-111	18	-3	multi-exon	FALSE	canonical	3	23	junction_5	118.829962551538	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTCTTGGTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	70861372	70868624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70868483
73154	chr17	-	443	4	NNC	ENSMUSG00000095677.3	novel	771	5	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2935.64965363527	392	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	6923240	6916336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6916559_6917514_6917626_6920709_6920752_6923172
73155	chr8	+	948	6	ISM	ENSMUSG00000033192.6	ENSMUST00000209265.2	2238	13	-66	43148	-10	5617	5prime_fragment	FALSE	canonical	1	1	junction_4	2.8	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAATCAGTCTTGAGTC	NA	False	NA	NA	False	NA	NA	NA	93581956	93602303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_93582254_93591528_93591669_93596275_93596494_93597765_93597879_93600860_93600920_93602182
73156	chr9	+	294	1	Intergenic	novelGene_1028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAATGTTTTAATTAAAA	557	False	NA	NA	False	NA	NA	NA	47740714	47741008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_47740700_47741000
73158	chr4	+	696	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	-26	2	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	963	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	3938887	3943526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
73159	chr10	+	651	1	Antisense	novelGene_ENSMUSG00000019773.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCACCCAGTTTCTGAGGC	NA	False	NA	NA	False	NA	NA	NA	5754541	5755192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5754500_5755200
73160	SIRV10002	-	2054	1	Antisense	novelGene_SIRV10002A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACCTAACTTACTAACCTA	NA	False	NA	NA	False	NA	NA	NA	6809	4755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV10002_-_4800_6800
73161	chr11	+	518	2	FSM	ENSMUSG00000093483.2	ENSMUST00000176016.2	471	2	-46	-1	-2	0	multi-exon	FALSE	canonical	3	381	junction_1	0	1001	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTATTTGTTTGGGTAAG	5846	False	NA	NA	False	NA	NA	NA	83182522	83185457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83182924_83185340
73162	chr7	+	1824	2	NNC	ENSMUSG00000011427.17	novel	3356	5	NA	NA	-14	1566	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAACTGCCAACTCTGTG	NA	False	NA	NA	False	NA	NA	NA	29515524	29524139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29517072_29523862
73163	chr7	+	858	3	ISM	ENSMUSG00000047603.10	ENSMUST00000205680.2	1332	5	-18	3409	4	621	5prime_fragment	TRUE	canonical	3	44	junction_2	1	19	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTCGTTGTGAATGTGA	NA	False	NA	NA	False	NA	NA	NA	23833602	23836960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_23833913_23834682_23834741_23836470
73167	chr9	-	1566	7	FSM	ENSMUSG00000032334.11	ENSMUST00000061799.10	3297	7	852	879	852	-879	multi-exon	FALSE	canonical	2	7	junction_6	4.22952584681651	17	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTCTAGTCTGGAGCTC	7424	False	NA	NA	False	NA	NA	NA	58219617	58195899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_58196201_58198037_58198154_58199851_58199948_58200855_58201013_58201641_58201780_58204903_58205013_58218968
73170	chr8	+	833	2	Antisense	novelGene_ENSMUSG00000031665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	16	junction_1	0	72	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCTCCTTCATAAATAA	NA	False	NA	NA	False	NA	NA	NA	89767876	89784296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_89768425_89784011
73171	chr15	-	1028	10	NNC	ENSMUSG00000033565.19	novel	1218	10	NA	NA	-14575	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	95.3777415346312	9	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTGTGGTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76988475	76968025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76968407_76969777_76969851_76970266_76970356_76976011_76976055_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76988426
73172	chr15	+	1490	10	NNC	ENSMUSG00000033039.11	novel	1907	9	NA	NA	368	6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	14.8955209109946	1	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCCCAACCAGTTGTG	4137	False	NA	NA	False	NA	NA	NA	79009619	79017493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79009688_79009742_79009875_79011126_79011534_79014008_79014144_79014662_79014790_79014908_79015000_79015137_79015212_79015973_79016089_79016252_79016300_79017199
73173	chr10	+	1566	12	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	15255	3781	375	-3781	internal_fragment	FALSE	canonical	3	93	junction_8	12.7564600390262	8	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGAGAAAGATCAAGTCT	7056	False	NA	NA	False	NA	NA	NA	128310444	128321444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428
73175	chr13	+	1209	1	Intergenic	novelGene_1372	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGAGATAACATGCTG	NA	False	NA	NA	False	NA	NA	NA	53377784	53378993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_53377800_53379000
73176	chr17	-	1195	8	NNC	ENSMUSG00000024114.16	novel	1128	7	NA	NA	10	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10.1478860772446	5	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTGGCACTCTGCAGCA	NA	False	NA	NA	False	NA	NA	NA	24063113	24055761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24056123_24056464_24056623_24061259_24061500_24062173_24062318_24062415_24062585_24062812_24062846_24062930_24062958_24063050
73177	chr13	+	1978	3	Intergenic	novelGene_1514	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	62	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATACTCTGACTCTCATT	NA	False	NA	NA	False	NA	NA	NA	98461132	98467725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_98462214_98462403_98462533_98466957
73178	chr5	-	1643	1	Intergenic	novelGene_669	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATGTATAGGCCTAGCTA	4335	False	NA	NA	False	NA	NA	NA	24379279	24377636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_24377600_24379300
73180	chr15	+	409	1	Intergenic	novelGene_3352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCCCTTCTACAGAGCAG	NA	False	NA	NA	False	NA	NA	NA	96741439	96741848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_96741400_96741800
73181	chr16	+	754	2	NNC	ENSMUSG00000022528.9	novel	1468	4	NA	NA	77	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTAGAACTGATTATTT	NA	False	NA	NA	False	NA	NA	NA	29884234	29886614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_29884356_29885981
73183	chrX	+	895	3	NNC	ENSMUSG00000050435.3	novel	743	2	NA	NA	-7222	-19	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	13	100	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGGAGGTGGTTCACTG	NA	False	NA	NA	False	NA	NA	NA	113807486	113815619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_113807624_113814674_113814900_113815086
73184	chr7	+	555	3	FSM	ENSMUSG00000040466.17	ENSMUST00000133750.8	509	3	-53	7	23	-7	multi-exon	FALSE	canonical	2	274	junction_1	60	58	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACACATTCACTGAGCACC	NA	False	NA	NA	False	NA	NA	NA	27147425	27159181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27147622_27158680_27158846_27158987
73185	chr1	+	721	5	NNC	ENSMUSG00000018196.19	novel	580	4	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	237.857494100985	22	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATCTCCCGATTGGCCAG	NA	False	NA	NA	False	NA	NA	NA	143615333	143622510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_143615423_143617385_143617450_143620784_143620962_143621706_143621833_143622245
73188	chr6	-	493	3	NNC	ENSMUSG00000107704.2	novel	639	3	NA	NA	-2102	-7485	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2	30	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGAGCACATTCCATTC	NA	False	NA	NA	False	NA	NA	NA	115515963	115513576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_115513925_115515501_115515577_115515893
73192	chr2	-	616	2	FSM	ENSMUSG00000039195.5	ENSMUST00000048792.5	680	2	57	7	-19	-7	multi-exon	FALSE	canonical	3	268	junction_1	0	1242	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCCCCTTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	32271893	32269119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32269546_32271703
73193	chr18	+	207	2	Genic_Genomic	ENSMUSG00000058064.7	novel	534	1	NA	NA	-16	34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAATGCAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	15965834	15966418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_15965967_15966343
73194	chr4	-	208	1	ISM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	984	3140	552	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTTGCTGGCTTTTGT	917	False	NA	NA	False	NA	NA	NA	3834681	3834473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_3834500_3834700
73196	chr4	-	724	3	FSM	ENSMUSG00000078570.11	ENSMUST00000163946.2	762	3	32	6	32	-1	multi-exon	FALSE	canonical	3	65	junction_2	68	136	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGTGACTGACCTTTCT	7687	False	NA	NA	False	NA	NA	NA	124744491	124743283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_124743756_124744024_124744227_124744441
73197	chr8	+	836	2	FSM	ENSMUSG00000065952.14	ENSMUST00000138454.2	637	2	-13	-186	-13	186	multi-exon	FALSE	canonical	3	29	junction_1	0	107	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTGCCTCTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	3617976	3623836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_3618097_3623120
73198	chr10	+	742	6	NNC	ENSMUSG00000044475.15	novel	1230	6	NA	NA	6	5343	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	97.6061473473879	37	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGAGCTTCAGTTGATGA	NA	False	NA	NA	False	NA	NA	NA	59838666	59867504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59867335
73200	chr11	+	1097	4	NNC	ENSMUSG00000078706.5	novel	1172	3	NA	NA	167	27	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	7.76029781788188	9	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTGGCTCCACTCTCCT	8442	False	NA	NA	False	NA	NA	NA	96142097	96155551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96142640_96152437_96152590_96154999_96155212_96155360
73201	chr9	+	1463	1	FSM	ENSMUSG00000020257.14	ENSMUST00000191147.2	3045	1	583	999	135	-999	mono-exon	FALSE	NA	NA	NA	NA	NA	10	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACACTAAGACTGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106048710	106050173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106048700_106050200
73202	chr10	-	760	3	Intergenic	novelGene_3429	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	3.5	37	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAGTTGCCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	41352253	41348879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_41349123_41351438_41351630_41351927
73203	chr1	+	977	5	NNC	ENSMUSG00000066652.6	novel	2473	4	NA	NA	0	-717	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	540.598915555701	1	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGAGGCATGGGACAC	NA	False	NA	NA	False	NA	NA	NA	180720672	180725951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014_180725117_180725895
73204	chr15	+	1705	1	Intergenic	novelGene_3351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTTTTATTGTCCGAG	NA	False	NA	NA	False	NA	NA	NA	94619370	94621075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_94619400_94621100
73205	chrX	-	501	6	NIC	ENSMUSG00000001134.10	novel	636	7	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	3	21	junction_4	287.700260688099	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGAATCACATAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	20828213	20818168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827873_20828026_20828172
73206	chr11	+	985	4	NNC	ENSMUSG00000018411.18	novel	5253	10	NA	NA	-8374	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	135.764501987817	1	61	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAACATGTAAAAA	9482	False	NA	NA	False	NA	NA	NA	104200484	104219265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_104200605_104201094_104201367_104212186_104212312_104218797
73207	chr9	+	841	3	FSM	ENSMUSG00000058173.13	ENSMUST00000215907.2	994	3	156	-3	156	0	multi-exon	FALSE	canonical	2	6	junction_1	1	138	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTTCTCTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	15404883	15456556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_15404926_15436923_15437001_15455834
73208	chr4	+	1338	1	NIC	ENSMUSG00000017264.17	novel	2790	25	NA	NA	3527	-1291	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTCCTGAAGCCCAGAC	NA	False	NA	NA	False	NA	NA	NA	148664149	148665487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_148664100_148665500
73209	chr16	+	607	3	FSM	ENSMUSG00000097290.10	ENSMUST00000209449.2	580	3	-7	-20	1	6	multi-exon	FALSE	canonical	3	94	junction_2	32	227	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAAGGTCCATGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	21613084	21627796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_21613197_21614599_21614726_21627427
73210	chr9	-	759	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	115	1	115	-1	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	230	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATGAGTGTGTTTGGTGA	1152	False	NA	NA	False	NA	NA	NA	51874731	51854606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
73211	chr3	+	2036	1	Intergenic	novelGene_3169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATATTCTGTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	101340336	101342372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_101340300_101342400
73212	chr4	-	1051	1	FSM	ENSMUSG00000078365.6	ENSMUST00000105158.2	1449	1	398	0	398	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAAGTGCTTTTCCTAA	3529	False	NA	NA	False	NA	NA	NA	3871707	3870656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3870700_3871700
73213	chr19	+	722	2	Genic_Genomic	ENSMUSG00000051255.7	novel	633	1	NA	NA	20	185	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTTAAGATTGTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	23653231	23654029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_23653293_23653368
73214	chr2	+	439	5	NNC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	12	-217	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2962.23989364467	1	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGGTGCAGTGGAGTG	5834	False	NA	NA	False	NA	NA	NA	32851763	32853838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32851842_32852540_32852685_32853002_32853079_32853508_32853596_32853784
73215	chr9	-	1689	1	Intergenic	novelGene_1150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCTAAGAAAACCAAATTTA	4940	False	NA	NA	False	NA	NA	NA	100541176	100539487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_100539500_100541200
73216	chr8	+	2241	5	FSM	ENSMUSG00000007594.11	ENSMUST00000007738.11	3648	5	68	1339	28	-1339	multi-exon	FALSE	canonical	1	2	junction_2	1.08972473588517	5	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAAGCCTAACACCTACC	1157	False	NA	NA	False	NA	NA	NA	70536174	70542173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70536214_70537069_70537191_70537431_70537795_70539457_70539782_70540779
73217	chr4	-	1245	1	Intergenic	novelGene_1865	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAACATTACCTCTGCAT	NA	False	NA	NA	False	NA	NA	NA	59321521	59320276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_59320300_59321500
73218	chr13	-	523	5	NNC	ENSMUSG00000041431.17	novel	2140	8	NA	NA	16	41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1683.42136733499	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGCTTAACTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	100922967	100916075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916294_100916529_100916641_100917283_100917331_100922342_100922412_100922889
73220	chr2	+	876	1	FSM	ENSMUSG00000078202.4	ENSMUST00000104999.4	2582	1	1706	0	1706	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGTTTTAATTTTGGCA	9657	False	NA	NA	False	NA	NA	NA	25072475	25073351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25072500_25073400
73221	chr1	+	1410	2	ISM	ENSMUSG00000049353.18	ENSMUST00000180463.3	3724	3	5892	1962	-908	-70	3prime_fragment	FALSE	canonical	1	1	junction_1	0	8	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGAGTGTCCCCAGCACC	NA	False	NA	NA	False	NA	NA	NA	191715222	191718282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_191715523_191717172
73223	chr10	+	1921	19	NNC	ENSMUSG00000089959.2	novel	1157	3	NA	NA	32763	33561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	13	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCCTGGTCTCCCCCTCG	1833	False	NA	NA	False	NA	NA	NA	86707720	86744379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_86707816_86708459_86708608_86709687_86709771_86711342_86711391_86714692_86714817_86719649_86719722_86721493_86721566_86723635_86723762_86726592_86726670_86727468_86727515_86729867_86729964_86732361_86732558_86733803_86733899_86735655_86735712_86737434_86737567_86741381_86741514_86743002_86743110_86743196_86743293_86744259
73224	chr7	+	1252	1	ISM	ENSMUSG00000052675.12	ENSMUST00000120006.8	3464	4	14036	351	7981	108	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTATGTGCAGGCAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	23825774	23827026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_23825800_23827000
73225	chr12	-	1830	6	NNC	ENSMUSG00000021047.8	novel	532	4	NA	NA	-6	952	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8.74070935336486	2	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAATACTAGTATTGTCT	NA	False	NA	NA	False	NA	NA	NA	46865718	46757532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_46758703_46760280_46760353_46767472_46767640_46863668_46863813_46865398_46865603_46865645
73227	chr9	-	612	1	ISM	ENSMUSG00000062270.15	ENSMUST00000190377.7	4640	10	15795	6563	-956	-348	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACACATTAGAAGAGGGC	NA	False	NA	NA	False	NA	NA	NA	89980898	89980286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_89980300_89980900
73229	chr14	+	991	3	Antisense	novelGene_ENSMUSG00000091847.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_2	5	163	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATACATATCTATGATCC	NA	False	NA	NA	False	NA	NA	NA	41085353	41102265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_41085450_41089611_41090056_41101814
73230	chr6	-	1201	7	ISM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	72	123387	13	-121546	5prime_fragment	FALSE	canonical	3	40	junction_5	2.38047614284762	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACTCTAGAACCAAATTT	NA	False	NA	NA	False	NA	NA	NA	43643140	43445321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
73231	chr10	-	987	4	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	54.0760780957922	100	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTCTATGCCACACCCG	NA	False	NA	NA	False	NA	NA	NA	127031597	127026255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127026909_127029598_127029673_127030278_127030504_127031562
73232	chrX	+	923	3	FSM	ENSMUSG00000050197.6	ENSMUST00000152730.4	876	3	-46	-1	-46	1	multi-exon	FALSE	canonical	3	73	junction_1	2	307	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTTAATTTTATGTGCT	NA	False	NA	NA	False	NA	NA	NA	37210049	37218845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_37210700_37211950_37211997_37218618
73234	chr10	-	1022	2	Intergenic	novelGene_3486	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTTTAATCCCAGCACT	NA	False	NA	NA	False	NA	NA	NA	76930015	76928955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_76929716_76929753
73237	chr17	+	1398	6	NNC	ENSMUSG00000043286.13	novel	2170	7	NA	NA	35	-1565	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.489897948556636	2	37	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCCCAGCCGGTCCCAGT	NA	False	NA	NA	False	NA	NA	NA	29077526	29100220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29078046_29095785_29096019_29096360_29096427_29097341_29097550_29098409_29098471_29099909
73238	chr2	+	733	5	Genic_Genomic	ENSMUSG00000086430.2	novel	1065	2	NA	NA	-2409	5067	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAGACCAGGAATGAGG	NA	False	NA	NA	False	NA	NA	NA	5039681	5051011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_5039890_5041481_5041582_5044949_5045084_5047256_5047334_5050797
73239	chr17	+	393	1	FSM	ENSMUSG00000094326.2	ENSMUST00000178657.2	483	1	108	-18	108	18	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACCAGCACCAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29527219	29527612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29527200_29527600
73240	chr1	+	543	5	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3142	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	60.9631035955356	221	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	171049480	171053942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171049548_171050883_171050916_171052855_171052936_171053234_171053368_171053711
73242	chr19	-	866	5	NNC	ENSMUSG00000074733.15	novel	4825	3	NA	NA	-2	166	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	22.9823301690668	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTGGCTTTGAGAAT	NA	False	NA	NA	False	NA	NA	NA	61129235	61115274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_61115506_61115875_61116003_61124801_61124861_61125284_61125641_61129142
73244	chr9	-	490	1	Antisense	novelGene_ENSMUSG00000042185.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAGCAACCACATGGTGG	NA	False	NA	NA	False	NA	NA	NA	31305352	31304862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_31304900_31305400
73245	chr10	+	2072	1	Intergenic	novelGene_3390	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTGAAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	9656500	9658572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_9656500_9658600
73247	chr15	+	1090	1	ISM	ENSMUSG00000023019.13	ENSMUST00000023760.13	2861	8	6362	39	3881	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCCACTTGTCTACCCAA	NA	False	NA	NA	False	NA	NA	NA	99621757	99622847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_99621800_99622800
73248	chr11	+	596	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	19	0	-3	0	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	214	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	NA	False	NA	NA	NA	101144551	101148875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
73249	chr1	-	642	4	NNC	ENSMUSG00000039246.9	novel	1578	5	NA	NA	14	38211	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	66.5148270855621	18	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTACTTCCCCAAAT	NA	False	NA	NA	False	NA	NA	NA	185849471	185781716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_185782025_185821640_185821757_185846460_185846561_185849353
73251	chr8	-	488	2	ISM	ENSMUSG00000039199.7	ENSMUST00000212109.2	2874	7	7432	8	7432	-8	3prime_fragment	FALSE	canonical	3	11	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTAATGCTTTTGCG	NA	False	NA	NA	False	NA	NA	NA	106199661	106199064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_106199514_106199622
73253	chr7	+	370	4	FSM	ENSMUSG00000074218.4	ENSMUST00000098594.4	393	4	23	0	23	0	multi-exon	FALSE	canonical	3	920	junction_1	139.802241279125	4109	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	5697	False	NA	NA	False	NA	NA	NA	29883591	29885455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29883671_29884509_29884597_29884699_29884785_29885336
73256	chr15	-	871	3	NNC	ENSMUSG00000046034.9	novel	1491	7	NA	NA	-2766	-31	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	97	34	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTAAACTGGTTTTACTTC	7568	False	NA	NA	False	NA	NA	NA	27611713	27606035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_27606548_27608704_27608948_27611597
73259	chr12	-	647	3	NNC	ENSMUSG00000021056.9	novel	2137	10	NA	NA	14744	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4.5	2	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTCTCTCCTGTGCTTG	3390	False	NA	NA	False	NA	NA	NA	76261494	76245459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76245726_76259148_76259332_76261296
73261	chrX	-	1089	5	NNC	ENSMUSG00000067567.13	novel	591	3	NA	NA	0	3151	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	29.0645832586672	12	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATACCTGTTGACTTGG	NA	False	NA	NA	False	NA	NA	NA	101548752	101538610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101539181_101541736_101541879_101543427_101543559_101548004_101548058_101548559
73262	chr6	-	400	1	Intergenic	novelGene_4195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAATAAATGCCAGAC	NA	False	NA	NA	False	NA	NA	NA	83092428	83092028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_83092000_83092400
73263	chr6	-	452	2	FSM	ENSMUSG00000101655.2	ENSMUST00000189386.2	775	2	309	14	286	-14	multi-exon	FALSE	canonical	3	7	junction_1	0	75	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTCAAGTTGACAGGGT	7305	False	NA	NA	False	NA	NA	NA	86464900	86460371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86460700_86464776
73264	chr13	-	1512	1	FSM	ENSMUSG00000021731.11	ENSMUST00000225170.2	3803	1	288	2003	288	-2003	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACGTCCGTCTCGCAGG	NA	False	NA	NA	False	NA	NA	NA	118522929	118521417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_118521400_118522900
73267	chr11	+	772	3	FSM	ENSMUSG00000078572.4	ENSMUST00000106223.4	781	3	0	9	0	-9	multi-exon	FALSE	canonical	3	883	junction_2	30.5	2986	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCTCACCTTGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	119989753	119991522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119989892_119989973_119990085_119990999
73268	chr5	+	974	4	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	11	-2	intron_retention	FALSE	canonical	3	89	junction_3	3.68178700572909	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTCTGCCTGATTACAG	NA	False	NA	NA	False	NA	NA	NA	31409281	31410539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31409448_31409535_31410134_31410238_31410347_31410437
73273	chrX	+	382	2	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	19252	480	1555	-480	3prime_fragment	FALSE	canonical	3	3976	junction_1	0	16	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	159	False	NA	NA	False	NA	NA	NA	20548388	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20548449_20548616
73274	chr12	+	1048	2	FSM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	35	4703	35	-4703	multi-exon	FALSE	canonical	3	15	junction_1	0	26	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGGTCCCTTGCAGACT	NA	False	NA	NA	False	NA	NA	NA	105420149	105454651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105420410_105453863
73275	chr2	-	739	2	Genic_Genomic	ENSMUSG00000070708.6	novel	822	1	NA	NA	-1755	-21	multi-exon	FALSE	canonical	3	735	junction_1	0	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAACCTGCAAAGTAAC	914	False	NA	NA	False	NA	NA	NA	162931530	162928974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_162929642_162931458
73276	chr1	+	883	5	NNC	ENSMUSG00000026715.13	novel	900	5	NA	NA	4672	73	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1.87082869338697	12	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACGAGAATGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	160821618	160830106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160821658_160822887_160823026_160824919_160825311_160827558_160827624_160829856
73277	chr8	+	841	1	Antisense	novelGene_ENSMUSG00000031604.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTGGCAGGTGCAGCG	NA	False	NA	NA	False	NA	NA	NA	65185734	65186575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_65185700_65186600
73278	chr16	-	1187	1	ISM	ENSMUSG00000061751.17	ENSMUST00000114960.9	6452	34	360834	4	10065	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGGCTGTTGATATATAG	NA	False	NA	NA	False	NA	NA	NA	33973584	33972397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_33972400_33973600
73279	chr1	+	331	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	122	-39	122	39	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127966427	127966758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127966400_127966800
73280	chr6	+	927	2	ISM	ENSMUSG00000015733.14	ENSMUST00000156701.8	3678	5	29	10260	22	-7048	5prime_fragment	FALSE	canonical	3	1925	junction_1	0	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTGCCTTAAACGGTGCA	-27	True	NA	NA	False	NA	NA	NA	17637062	17649348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_17637160_17648518
73282	chr15	+	810	1	Intergenic	novelGene_3211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTACTTTTTCCAAAATTG	NA	False	NA	NA	False	NA	NA	NA	8167457	8168267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_8167500_8168300
73284	chr3	-	273	2	ISM	ENSMUSG00000086745.2	ENSMUST00000146624.2	590	4	9022	12	9022	-12	3prime_fragment	FALSE	canonical	2	4	junction_1	0	2	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAAAACTACATGTTG	NA	False	NA	NA	False	NA	NA	NA	102633711	102627558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_102627764_102633643
73285	chr13	+	1627	2	FSM	ENSMUSG00000074634.13	ENSMUST00000178948.2	1648	2	22	-1	22	1	multi-exon	FALSE	canonical	0	0	junction_1	0	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTTTCTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	120068207	120071995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_120068567_120070727
73286	chr9	+	1999	1	ISM	ENSMUSG00000086596.3	ENSMUST00000135338.3	4083	5	38782	808	38782	-808	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTATCAGGTCCTGGGGTT	5630	False	NA	NA	False	NA	NA	NA	113924989	113926988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_113925000_113927000
73287	chr9	+	851	1	ISM	ENSMUSG00000086596.3	ENSMUST00000135338.3	4083	5	40731	7	40731	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACTTGATAAATGTATT	7579	False	NA	NA	False	NA	NA	NA	113926938	113927789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_113926900_113927800
73290	chr19	+	1405	1	FSM	ENSMUSG00000118106.2	ENSMUST00000235511.2	2276	1	867	4	867	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAATTTTTTATTAGATA	NA	False	NA	NA	False	NA	NA	NA	32464189	32465594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_32464200_32465600
73293	chr12	+	1731	2	NNC	ENSMUSG00000093579.2	novel	844	2	NA	NA	21	294	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGAATAAAGTTGTCTATT	NA	False	NA	NA	False	NA	NA	NA	101879519	101881888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_101880216_101880853
73297	chr8	+	555	3	NNC	ENSMUSG00000034880.8	novel	607	2	NA	NA	-34	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	452	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACGTATGTATTAACTTA	8886	False	NA	NA	False	NA	NA	NA	71917568	71918393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71917712_71917893_71918118_71918205
73298	chr5	-	581	5	NNC	ENSMUSG00000063919.12	novel	6555	5	NA	NA	5009	530	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	102	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCACCTTCTTCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	116600638	116576803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_116576898_116577427_116577493_116587816_116587906_116599775_116599923_116600452
73300	chr8	-	847	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	-102	-1	-102	1	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	2680	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGACAAGAAATTCTCCATA	NA	False	NA	NA	False	NA	NA	NA	123159771	123151513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
73301	chr5	+	876	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	32	14	-7	-14	multi-exon	FALSE	canonical	3	318	junction_1	5	2	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTCTTAGTTTGC	3439	False	NA	NA	False	NA	NA	NA	53424511	53435868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_53424701_53434484_53434542_53435238
73302	ERCC-00022	+	735	1	FSM	ERCC-00022A	DQ855004	735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00022_+_0_700
73303	chr17	-	944	7	NNC	ENSMUSG00000096727.4	novel	1352	6	NA	NA	15	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5.46707315561891	4	13	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAATAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	34406297	34401024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34401326_34402062_34402205_34402588_34402719_34403255_34403388_34404703_34404772_34405864_34405962_34406223
73312	chr7	-	804	3	ISM	ENSMUSG00000030553.4	ENSMUST00000032770.4	953	4	25067	31	25067	-31	3prime_fragment	FALSE	canonical	2	5	junction_2	1	44	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTTCTTTGAAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	67888914	67886388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_67886871_67887389_67887617_67888819
73313	chr8	-	1054	1	ISM	ENSMUSG00000051495.9	ENSMUST00000054960.9	5080	2	2275	2362	2275	-2362	mono-exon	FALSE	NA	NA	NA	NA	NA	44	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTGCCTTACTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	127318450	127317396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_127317400_127318400
73314	chr10	-	1252	7	FSM	ENSMUSG00000039480.15	ENSMUST00000099973.4	761	7	-100	-391	-29	391	multi-exon	FALSE	canonical	2	4	junction_1	35.3714417134627	78	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACAGTATTTTGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	34294577	34272672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_34273238_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
73316	chr11	+	1878	1	Antisense	novelGene_ENSMUSG00000013418.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAAGTCTGATCTCCCTC	NA	False	NA	NA	False	NA	NA	NA	95805248	95807126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_95805200_95807100
73317	chr1	+	866	2	Intergenic	novelGene_406	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	44	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAAACCCTTTCCTCTC	NA	False	NA	NA	False	NA	NA	NA	88698424	88699456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_88698634_88698799
73318	chr10	+	582	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	-4	25	-4	-25	multi-exon	TRUE	canonical	3	3631	junction_2	117.5	947	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATATATTTTTAGAGA	NA	False	NA	NA	False	NA	NA	NA	78261498	78263431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_78261692_78262760_78262863_78263144
73320	chr9	+	723	2	FSM	ENSMUSG00000010607.9	ENSMUST00000148088.2	676	2	-37	-10	-37	10	multi-exon	FALSE	canonical	3	126	junction_1	0	964	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGACCAGCCTTCATCCAAA	NA	False	NA	NA	False	NA	NA	NA	22068204	22069631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_22068324_22069027
73322	chr9	+	1923	1	ISM	ENSMUSG00000032006.16	ENSMUST00000058692.9	3131	7	208331	8	208254	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAACCAATTAAAGCCTTAT	NA	False	NA	NA	False	NA	NA	NA	6376914	6378837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_6376900_6378800
73325	chr3	+	620	4	NIC	ENSMUSG00000042747.13	novel	1172	5	NA	NA	23	4	intron_retention	FALSE	canonical	3	1428	junction_1	193.256881435622	82	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTGTAGCTGTGTCTG	7614	False	NA	NA	False	NA	NA	NA	89153763	89157020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89153823_89154084_89154436_89156380_89156448_89156877
73327	chr4	+	1044	1	NIC	ENSMUSG00000028797.21	novel	1575	5	NA	NA	16032	-489	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGCTTGCGTGCGTTTGC	NA	False	NA	NA	False	NA	NA	NA	129511834	129512878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129511800_129512900
73329	chr5	-	778	6	NNC	ENSMUSG00000029455.15	novel	623	5	NA	NA	23	172	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	374.223676428951	2	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACGGGGTCAGTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	121731620	121705768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121705894_121705961_121706087_121706988_121707104_121708666_121708825_121710079_121710266_121731551
73330	chr4	+	571	5	NNC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-92	-16510	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	32.2286751201473	70	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTGTGTTCTGGCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	62501745	62525643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525482
73331	chr9	+	1306	11	NNC	ENSMUSG00000032263.15	novel	1477	11	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	272.11323010835	202	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTGTGTGTGTCCTCTT	NA	False	NA	NA	False	NA	NA	NA	83807171	84006293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_83807238_83807357_83807413_83835765_83835835_83870828_83870963_83871193_83871350_83873766_83873876_83892306_83892405_83894561_83894673_83951157_83951245_84004286_84004436_84006021
73333	chr7	+	1176	4	NNC	ENSMUSG00000092216.4	novel	993	4	NA	NA	-15040	166	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	15	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTTGTTCCTCAAAGGA	NA	False	NA	NA	False	NA	NA	NA	19570887	19592441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_19571024_19588866_19589020_19591443_19591615_19591725
73334	chr9	-	1119	7	ISM	ENSMUSG00000020253.16	ENSMUST00000076258.13	1811	10	1638	7	-416	-7	3prime_fragment	FALSE	canonical	3	111	junction_3	12.8937969582276	54	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTCTTTTCTCTC	5814	False	NA	NA	False	NA	NA	NA	106074503	106072156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_106072670_106072985_106073138_106073248_106073357_106073566_106073631_106073791_106073911_106074002_106074088_106074425
73335	chr2	+	1897	11	NNC	ENSMUSG00000037143.18	novel	3998	27	NA	NA	17195	62	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.4	4	25	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACACCCCAACCCCCATC	2469	False	NA	NA	False	NA	NA	NA	145906365	146056777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145906419_145919180_145919309_145937543_145937643_145943872_145944042_145951826_145952002_145970873_145971167_145984932_145985261_145987303_145987396_145995631_145995838_146042629_146042721_146056514
73336	chr4	-	961	4	ISM	ENSMUSG00000028789.17	ENSMUST00000106068.8	2049	11	14808	-1	13778	1	3prime_fragment	FALSE	canonical	3	22	junction_2	2.05480466765633	21	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTAAACCCTTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	128841413	128825813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_128826285_128828249_128828465_128839849_128839963_128841251
73337	chr12	-	621	3	FSM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	19	8	2	3	multi-exon	FALSE	canonical	3	386	junction_2	28.5	1454	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTTACATTGCTTCCCC	4310	False	NA	NA	False	NA	NA	NA	85327190	85319179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85319602_85326764_85326857_85327083
73338	chr9	-	1222	8	FSM	ENSMUSG00000032278.12	ENSMUST00000034817.11	3566	8	30	2314	-25	-6	multi-exon	FALSE	canonical	1	1	junction_5	2.96922995583236	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGACTTCAGAATGTGCC	NA	False	NA	NA	False	NA	NA	NA	61934108	61863333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_61863570_61868810_61868953_61871009_61871107_61876062_61876190_61879907_61880114_61883353_61883482_61896274_61896421_61933968
73339	chr3	+	529	1	Genic_Genomic	ENSMUSG00000041237.13	novel	NA	NA	NA	NA	10158	525	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCCTGGGGACACCCTTG	NA	False	NA	NA	False	NA	NA	NA	89054087	89054616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89054100_89054600
73340	chr8	+	947	1	ISM	ENSMUSG00000025812.19	ENSMUST00000160272.8	5815	25	547008	7	31609	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTCTTTGCTGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	128337813	128338760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_128337800_128338800
73341	chr8	-	2104	1	Genic_Genomic	ENSMUSG00000035569.18	novel	NA	NA	NA	NA	-2579	1862	mono-exon	FALSE	NA	NA	NA	NA	NA	4	50	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAATAAGCCCACACTGC	NA	False	NA	NA	False	NA	NA	NA	123633043	123630939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_123630900_123633000
73342	chr7	+	1956	6	Antisense	novelGene_ENSMUSG00000030509.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	54	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCACTGGAGCCTGCGCTC	2259	False	NA	NA	False	NA	NA	NA	66326788	66339339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_66327701_66327906_66327993_66328826_66329089_66331451_66331556_66338568_66338667_66338845
73345	chr1	+	1259	8	ISM	ENSMUSG00000026073.14	ENSMUST00000027243.13	1419	9	17723	6	16436	6	3prime_fragment	FALSE	canonical	1	2	junction_5	1.35526185435788	21	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGAGAGTGACCCATGTGG	NA	False	NA	NA	False	NA	NA	NA	40141580	40164385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_40141698_40144423_40144683_40151114_40151296_40154183_40154359_40157114_40157178_40160068_40160205_40162281_40162425_40164200
73346	chr11	-	373	3	NNC	ENSMUSG00000018474.19	novel	6066	39	NA	NA	-4297	-3359	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	6	2	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCGAGTATGGAACTGGA	NA	False	NA	NA	False	NA	NA	NA	69264529	69254908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69254970_69255517_69255631_69264330
73347	chr5	-	812	2	Antisense	novelGene_ENSMUSG00000107300.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	0	59	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATACTATTGTATGGG	NA	False	NA	NA	False	NA	NA	NA	66847268	66844676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_66845383_66847162
73348	chr6	+	1312	10	FSM	ENSMUSG00000061758.14	ENSMUST00000038383.14	1371	10	54	5	-9	-2	multi-exon	FALSE	canonical	3	14	junction_8	4.10960933531265	62	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAGACATTTTCAACTGTC	3060	False	NA	NA	False	NA	NA	NA	34361206	34373880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34366989_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
73349	chr15	-	266	2	Genic_Genomic	ENSMUSG00000067870.6	novel	378	1	NA	NA	50	43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTGG	NA	False	NA	NA	False	NA	NA	NA	90648809	90648438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_90648581_90648685
73350	chr11	+	790	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	17	14	-14	-14	multi-exon	FALSE	canonical	3	400	junction_3	16.768646337734	2225	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGTGTCTTGTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	32155431	32158970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
73352	chr2	-	591	1	Intergenic	novelGene_2765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATAAAGGAAAAGAATAAC	NA	False	NA	NA	False	NA	NA	NA	162891955	162891364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_162891400_162892000
73353	chr14	-	893	5	FSM	ENSMUSG00000040314.3	ENSMUST00000015583.2	1002	5	108	1	108	-1	multi-exon	FALSE	canonical	1	1	junction_1	0.5	14	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTTGAACTCCTATGT	NA	False	NA	NA	False	NA	NA	NA	56339923	56337338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_56337608_56337999_56338255_56338430_56338567_56339053_56339202_56339838
73355	chr7	+	2126	1	Intergenic	novelGene_2983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATAGGAGAAAAAACAGCAT	5156	False	NA	NA	False	NA	NA	NA	75634773	75636899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_75634800_75636900
73356	chr3	-	790	3	FSM	ENSMUSG00000068860.6	ENSMUST00000107197.2	1289	3	499	0	499	0	multi-exon	FALSE	canonical	3	16	junction_2	7.5	77	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGGTCTCATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	95148410	95144417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95144541_95147260_95147423_95147905
73357	chr19	+	1246	2	NNC	ENSMUSG00000097740.3	novel	1266	3	NA	NA	2363	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCAGCATATTGCACTTT	NA	False	NA	NA	False	NA	NA	NA	40859192	40862507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_40859299_40861367
73360	chr1	+	370	3	FSM	ENSMUSG00000026520.9	ENSMUST00000194026.2	1039	3	2	667	2	-667	multi-exon	FALSE	canonical	3	1107	junction_1	3.5	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCATCCCCTTCATCCTG	34	False	NA	NA	False	NA	NA	NA	180731875	180733517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180732096_180732308_180732380_180733438
73361	chr4	-	557	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	12	70	6	-66	multi-exon	FALSE	canonical	3	2176	junction_1	0	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCAGCATACACCCACAA	-4	True	NA	NA	False	NA	NA	NA	45108102	45105277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_45105645_45107912
73363	chr17	+	966	4	ISM	ENSMUSG00000024186.16	ENSMUST00000155072.8	1331	6	566	15	178	-13	3prime_fragment	FALSE	canonical	2	4	junction_1	1.4142135623731	14	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCAGTCCCCTGCACAG	NA	False	NA	NA	False	NA	NA	NA	26426993	26430276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26427054_26427137_26427277_26429430_26429514_26429592
73364	chr11	+	568	3	ISM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	76	8959	28	-8959	5prime_fragment	FALSE	canonical	3	194	junction_1	34	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCATGGGTTTGAGTT	NA	False	NA	NA	False	NA	NA	NA	60721532	60740290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_60721558_60734990_60735170_60739926
73365	chr10	-	1076	1	FSM	ENSMUSG00000112039.2	ENSMUST00000218023.2	1397	1	39	282	39	-282	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTCGTGGATTTAAAGCA	NA	False	NA	NA	False	NA	NA	NA	108535982	108534906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_108534900_108536000
73366	chr2	-	567	3	ISM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	56	5227	-9	-1644	5prime_fragment	FALSE	canonical	3	22	junction_2	6.5	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATATGCCTCAAGTAACA	NA	False	NA	NA	False	NA	NA	NA	6134966	6107644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_6107877_6118703_6118925_6134852
73368	chr10	+	448	3	NIC	ENSMUSG00000020022.18	novel	1110	4	NA	NA	-2	1	combination_of_known_splicesites	FALSE	canonical	3	40	junction_2	1952.5	67	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTCTTGTGCGTTCAC	NA	False	NA	NA	False	NA	NA	NA	94034896	94056811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_94034993_94035811_94035895_94056542
73369	chr11	-	678	3	NNC	ENSMUSG00000045471.5	novel	586	2	NA	NA	-596	-27	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACGATTCTCTGTTGGTG	NA	False	NA	NA	False	NA	NA	NA	100654353	100652543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100652992_100653646_100653838_100654314
73371	chr2	+	408	4	NNC	ENSMUSG00000026749.12	novel	10338	10	NA	NA	73414	49310	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	259	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCCGGGCCGAGGGCGGA	4921	False	NA	NA	False	NA	NA	NA	38478051	38533928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_38478228_38532225_38532287_38533368_38533463_38533851
73373	chr4	+	982	2	Antisense	novelGene_ENSMUSG00000028803.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	13	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAACCCATAAGGCCTGG	NA	False	NA	NA	False	NA	NA	NA	135213628	135216369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135213801_135215559
73374	chr9	+	740	7	ISM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	11	8286	-6	-345	5prime_fragment	FALSE	canonical	3	19	junction_1	111.701114089739	3	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGCAGGCAGCACCCCAA	NA	False	NA	NA	False	NA	NA	NA	57818327	57828963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909
73375	chr7	-	1307	7	ISM	ENSMUSG00000000605.10	ENSMUST00000210594.2	2539	12	501	7317	8	-104	internal_fragment	FALSE	canonical	3	23	junction_6	8.14452781524708	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGAAGGTAAGTCAAGCA	NA	False	NA	NA	False	NA	NA	NA	7301760	7294417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7301690
73376	chr7	-	626	5	NIC	ENSMUSG00000006315.10	novel	774	7	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_3	317.945258653121	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9308	False	NA	NA	False	NA	NA	NA	30428914	30427125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30427329_30427411_30427534_30427629_30427715_30428626_30428697_30428768
73377	chr19	+	1731	1	Intergenic	novelGene_1213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGAGATGGCACTGTCAG	NA	False	NA	NA	False	NA	NA	NA	16237499	16239230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_16237500_16239200
73379	chr4	+	940	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	735	14	-53	-5	multi-exon	FALSE	canonical	3	53	junction_1	143	195	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTAGTCTTGGCGACTCAG	7077	False	NA	NA	False	NA	NA	NA	126042271	126043653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_126042425_126042676_126042839_126043028
73380	chr9	+	656	1	NIC	ENSMUSG00000049305.7	novel	3092	2	NA	NA	32	-2045	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTACTTGAAGAGCATC	227	False	NA	NA	False	NA	NA	NA	108337765	108338421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108337800_108338400
73381	chr10	+	1347	11	ISM	ENSMUSG00000034707.8	ENSMUST00000040344.7	3855	14	9439	4214	186	-4214	internal_fragment	FALSE	canonical	3	144	junction_2	10.363879582473	5	7	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTACCTTTGGTGGCTGCT	7683	False	NA	NA	False	NA	NA	NA	121210433	121228936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_121210470_121212112_121212179_121212540_121212640_121213926_121214095_121216022_121216106_121217077_121217197_121219244_121219349_121224005_121224108_121226528_121226637_121227275_121227387_121228585
73385	chr17	+	1185	2	FSM	ENSMUSG00000091475.5	ENSMUST00000163493.4	1802	2	602	15	78	5	multi-exon	FALSE	canonical	2	5	junction_1	0	20	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGTCCTGCATTTAT	3334	False	NA	NA	False	NA	NA	NA	25789933	25794002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25790076_25792959
73388	chr16	-	352	2	Genic_Genomic	ENSMUSG00000050299.9	novel	402	1	NA	NA	-60	40	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAGAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	76200600	76200098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_76200260_76200409
73389	chr13	-	774	3	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	1	76	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGTGCACAATTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59059822	59056455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_59056897_59058134_59058376_59059730
73391	chr9	-	2045	2	Antisense	novelGene_ENSMUSG00000091129.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAACATGAAGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	106503653	106499799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_106501715_106503523
73392	chr18	+	1652	1	NIC	ENSMUSG00000024283.16	novel	3070	14	NA	NA	189	-3632	mono-exon	FALSE	NA	NA	NA	NA	NA	5	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAATGATTCCTACTTAG	5358	False	NA	NA	False	NA	NA	NA	7910807	7912459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_7910800_7912500
73394	chr15	-	1146	4	NNC	ENSMUSG00000023008.19	novel	4423	27	NA	NA	6406	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28.9942523039768	19	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGCACCAAGCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	99217128	99215102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99215571_99215792_99216254_99216798_99216899_99217011
73396	chr9	-	1451	4	Antisense	novelGene_ENSMUSG00000025602.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	27.7648858972784	26	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGAGTCTTGAGTAGTT	NA	False	NA	NA	False	NA	NA	NA	40151203	40089498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_40090646_40108832_40108959_40121021_40121120_40151123
73397	chr7	-	1435	1	Intergenic	novelGene_2903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGGCAAGTTAAGACATGGA	NA	False	NA	NA	False	NA	NA	NA	27401545	27400110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_27400100_27401500
73398	chr7	+	403	4	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	16	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6379.9772378556	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGTGGCCTTTAAACAT	2394	False	NA	NA	False	NA	NA	NA	141027559	141031258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141027621_141027820_141027945_141028638_141028746_141031147
73399	chr3	-	377	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	68	3	-3	0	multi-exon	FALSE	canonical	3	427	junction_1	15.5	7522	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACTGTGTCCTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	123301985	123301203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_123301310_123301465_123301512_123301760
73401	chr2	+	1004	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	51	2	51	-2	multi-exon	FALSE	canonical	3	543	junction_1	21	199	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTGCCCATTTACTGG	436	False	NA	NA	False	NA	NA	NA	130405712	130407312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130405911_130406000_130406352_130406857
73402	chr6	-	1248	10	NIC	ENSMUSG00000030032.15	novel	4634	10	NA	NA	15	-32	intron_retention	FALSE	canonical	1	2	junction_7	15.2809087700799	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGTATTTATAAAGTATT	9915	False	NA	NA	False	NA	NA	NA	83133346	83129722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132223_83132459_83132523_83132630_83132778_83133156
73404	chr17	-	1537	10	Antisense	novelGene_ENSMUSG00000045394.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATCGAGGAAA	NA	False	NA	NA	False	NA	NA	NA	87958305	87943523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_87943631_87943883_87944032_87947322_87947432_87947715_87947956_87948859_87948928_87949529_87949593_87950968_87951072_87953564_87953766_87957038_87957085_87957853
73405	chr8	-	1357	7	FSM	ENSMUSG00000031449.11	ENSMUST00000033826.4	1378	7	14	7	14	-7	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	10	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAATCCATGCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	13446811	13436211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_13436788_13437428_13437540_13438762_13438820_13439665_13439866_13439989_13440104_13443435_13443565_13446641
73406	chr8	+	505	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	575	531	-559	203	multi-exon	FALSE	canonical	3	42	junction_2	9.2736184954957	105	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTGCAGCTACCTAAAA	NA	False	NA	NA	False	NA	NA	NA	71824557	71825802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
73407	chr7	+	669	1	Intergenic	novelGene_2883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTGATCTGTTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	15782317	15782986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_15782300_15783000
73411	chr12	+	325	1	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	-5	-21992	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCTTTACCCTTGCATAT	NA	False	NA	NA	False	NA	NA	NA	8258187	8258512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8258200_8258500
73413	chr5	-	716	1	ISM	ENSMUSG00000036948.18	ENSMUST00000048421.14	2490	11	3602	21	553	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTTTGGGAGGGAGT	5480	False	NA	NA	False	NA	NA	NA	138258654	138257938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_138257900_138258700
73415	chr8	-	907	8	NNC	ENSMUSG00000034799.17	novel	944	8	NA	NA	1000	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	23.0863507691609	7	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACGTGTGTTATATATAA	NA	False	NA	NA	False	NA	NA	NA	72123380	72112991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_72113294_72114462_72114496_72115124_72115180_72115493_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72123284
73417	chr4	-	2085	3	Antisense	novelGene_ENSMUSG00000070999.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_2	0.5	5	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGCCTGATTCGGCCTC	NA	False	NA	NA	False	NA	NA	NA	43993181	43982809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_43984710_43985992_43986071_43993074
73418	chr18	+	371	2	FSM	ENSMUSG00000087590.3	ENSMUST00000179138.2	303	2	-48	-20	-1	3	multi-exon	FALSE	canonical	3	41	junction_1	0	172	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGTATGTTGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	33927943	33929042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_33928178_33928905
73419	chr8	-	844	7	FSM	ENSMUSG00000015023.8	ENSMUST00000173183.2	731	7	-60	-53	-30	53	multi-exon	FALSE	canonical	3	259	junction_3	37.1786228900426	92	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGACTGTGTGTCATGGGC	7656	False	NA	NA	False	NA	NA	NA	111724462	111707051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
73420	chr11	-	699	5	FSM	ENSMUSG00000018509.9	ENSMUST00000018653.8	1032	5	330	3	72	0	multi-exon	FALSE	canonical	3	1369	junction_4	69.2639877569867	232	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTATTACTATGACATATT	8701	False	NA	NA	False	NA	NA	NA	62429757	62415774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427207_62429681
73421	chr10	-	1567	9	ISM	ENSMUSG00000075225.16	ENSMUST00000189488.3	7260	48	103500	41372	-297	4	internal_fragment	FALSE	canonical	1	2	junction_2	2.20439901106855	5	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCTCTCTTCAGTCTGCC	1244	False	NA	NA	False	NA	NA	NA	41489130	41456216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_41456360_41457154_41457388_41462247_41462401_41463345_41463442_41465555_41465707_41474412_41474552_41481046_41481213_41482567_41482689_41488765
73422	chr1	-	753	1	ISM	ENSMUSG00000057363.13	ENSMUST00000126008.8	4620	15	77506	2576	76722	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAACTCATCAGACATGG	NA	False	NA	NA	False	NA	NA	NA	43789454	43788701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_43788700_43789500
73423	chr11	+	690	5	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	-6213	-22	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	282.473339449938	2	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAAAAAGTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	4672371	4687647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4672490_4678584_4678648_4680186_4680268_4682066_4682179_4687331
73424	chr14	+	1040	1	Intergenic	novelGene_583	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTTAAGGAGGGTGTTG	NA	False	NA	NA	False	NA	NA	NA	59678472	59679512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_59678500_59679500
73427	chr17	+	1685	1	FSM	ENSMUSG00000073374.4	ENSMUST00000097289.3	1471	1	27	-241	27	241	mono-exon	FALSE	NA	NA	NA	NA	NA	6	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCATAATAAAAAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	69724482	69726167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_69724500_69726200
73428	chrX	+	975	6	NNC	ENSMUSG00000087368.8	novel	3201	10	NA	NA	-5713	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.2498888883402	3	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGCACCAAATAAAAATGAG	NA	False	NA	NA	False	NA	NA	NA	135660642	135704097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_135660668_135661166_135661325_135661538_135661639_135662739_135662838_135689269_135689367_135703600
73429	chr1	-	783	5	ISM	ENSMUSG00000026247.14	ENSMUST00000027463.11	2695	17	5406	11	-705	-7	3prime_fragment	FALSE	canonical	2	6	junction_4	2.9474565306379	24	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTACTATATATAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	87077343	87075390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_87075809_87075947_87076025_87076346_87076443_87076855_87076922_87077217
73431	chr6	+	529	4	FSM	ENSMUSG00000045160.15	ENSMUST00000136501.2	2312	4	43	1740	-2	0	multi-exon	FALSE	canonical	3	755	junction_1	124.478467571259	306	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTGCCATGCTTCAGG	392	False	NA	NA	False	NA	NA	NA	83326470	83335378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83326537_83328247_83328372_83330023_83330113_83335128
73432	chr10	+	1433	1	Antisense	novelGene_ENSMUSG00000001151.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTTTCATGACTCAAAAG	NA	False	NA	NA	False	NA	NA	NA	76278258	76279691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_76278300_76279700
73433	chr5	-	2333	2	Intergenic	novelGene_661	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	59	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCCTTTCCATTTTATTC	6812	False	NA	NA	False	NA	NA	NA	18488400	18479329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_18479927_18486664
73435	chr17	+	661	5	NNC	ENSMUSG00000073435.11	novel	715	5	NA	NA	-6	14	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	82.368076340291	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTGTGCGCTGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	25115467	25116472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25115534_25115637_25115733_25115825_25115928_25116001_25116115_25116187
73436	chr7	+	233	1	ISM	ENSMUSG00000025491.15	ENSMUST00000106042.9	882	3	2304	68	1485	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTGACACTCACAAATCT	NA	False	NA	NA	False	NA	NA	NA	140549437	140549670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_140549400_140549700
73437	chr17	-	894	1	Intergenic	novelGene_294	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAGACCAGAAGAGGGTG	5515	False	NA	NA	False	NA	NA	NA	71081054	71080160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_71080200_71081100
73438	chr13	-	719	4	NNC	ENSMUSG00000021606.9	novel	568	4	NA	NA	517	-2	at_least_one_novel_splicesite	FALSE	canonical	1	64	junction_3	1097.76935444362	24	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGTGAGTTGTTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	73476054	73467994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_73468180_73468412_73468536_73475534_73475589_73475697
73443	chr7	+	1145	8	ISM	ENSMUSG00000030515.10	ENSMUST00000126941.2	2709	13	7466	7356	-6668	-7356	internal_fragment	FALSE	canonical	3	56	junction_6	10.4978131833565	5	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATTCCTACATACTATT	NA	False	NA	NA	False	NA	NA	NA	65302111	65326206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711
73444	chr3	-	986	2	NNC	ENSMUSG00000081355.2	novel	502	6	NA	NA	-12	-25638	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	9	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGATCCTTGTGTCCCGTGT	NA	False	NA	NA	False	NA	NA	NA	94665435	94652967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94653860_94665341
73445	chr16	+	556	1	Intergenic	novelGene_3859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATCCCAGTTTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	92273571	92274127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_92273600_92274100
73446	chr1	+	1254	4	NNC	ENSMUSG00000006007.15	novel	1246	4	NA	NA	8118	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	15	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTCTGTGTAAAGCCTAT	NA	False	NA	NA	False	NA	NA	NA	150203297	150209654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_150203392_150204066_150204152_150206476_150206623_150208725
73447	chr4	-	546	3	ISM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	85	2114	-33	-4	5prime_fragment	FALSE	canonical	3	184	junction_1	0	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCACTGCCCGGCTAGAT	NA	False	NA	NA	False	NA	NA	NA	116565518	116561589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116561857_116563077_116563273_116565434
73448	chr10	+	863	2	FSM	ENSMUSG00000085347.2	ENSMUST00000143122.2	1218	2	-326	681	25	-5	multi-exon	FALSE	canonical	3	18	junction_1	0	75	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAAATTGCCCTGTGCC	NA	False	NA	NA	False	NA	NA	NA	62176059	62185625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_62176563_62185265
73449	chr8	+	587	1	FSM	ENSMUSG00000096014.2	ENSMUST00000180353.2	4832	1	2363	1882	2363	-1882	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAAAACAAAGAGAGATAC	8288	False	NA	NA	False	NA	NA	NA	12447657	12448244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_12447700_12448200
73450	chr8	+	857	1	FSM	ENSMUSG00000096014.2	ENSMUST00000180353.2	4832	1	3002	973	3002	-973	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTAAAAGTTATACTGTA	8927	False	NA	NA	False	NA	NA	NA	12448296	12449153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_12448300_12449200
73452	chr2	+	684	1	Antisense	novelGene_ENSMUSG00000054057.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTACTTGTTTGAAGGC	4573	False	NA	NA	False	NA	NA	NA	18032538	18033222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_18032500_18033200
73453	chr2	-	732	1	Intergenic	novelGene_2756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAATGAAGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157218210	157217478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_157217500_157218200
73455	chr17	-	723	2	NNC	ENSMUSG00000079553.12	novel	406	3	NA	NA	6713	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTTAATCTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	34095487	34094648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34095156_34095271
73456	chr11	+	529	1	NIC	ENSMUSG00000020721.17	novel	687	5	NA	NA	1403	-28257	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCACACATCCTAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	107440196	107440725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_107440200_107440700
73458	chr19	-	657	4	FSM	ENSMUSG00000024799.17	ENSMUST00000160417.8	718	4	28	33	5	-16	multi-exon	FALSE	canonical	3	23	junction_3	116.793264645983	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAGGGTTTTTAATATAA	-1	True	NA	NA	False	NA	NA	NA	6117852	6116191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117698
73459	chr8	+	1248	5	FSM	ENSMUSG00000031844.9	ENSMUST00000034304.9	1320	5	70	2	70	-2	multi-exon	FALSE	canonical	1	1	junction_3	2.69258240356725	12	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGATTCTTATTTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	118428712	118485764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_118429003_118461232_118461446_118469070_118469257_118479924_118480063_118485343
73461	chr6	-	1041	2	Intergenic	novelGene_4131	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAAGCTTTCATATCTG	4	False	NA	NA	False	NA	NA	NA	29669911	29666630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_29667558_29669797
73462	chr13	-	938	1	FSM	ENSMUSG00000065453.3	ENSMUST00000083519.3	103	1	-352	-483	-352	483	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAAACTTGTGCTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	48689942	48689004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_48689000_48689900
73463	chr17	-	750	5	Antisense	novelGene_ENSMUSG00000040658.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1477	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCCCAGAGGTAAGGGGA	1358	False	NA	NA	False	NA	NA	NA	46811004	46807685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_46807897_46809348_46809419_46809567_46809678_46809800_46810027_46810871
73465	chr6	+	1221	3	NNC	ENSMUSG00000030347.7	novel	550	3	NA	NA	-21	633	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	3	17	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTCATTTCATTAGTAC	NA	False	NA	NA	False	NA	NA	NA	126916970	126920271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_126917274_126919274_126919726_126919804
73466	chr2	-	1079	4	NNC	ENSMUSG00000086523.2	novel	603	3	NA	NA	-82313	531	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.62466929133727	31	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAAGGCTCAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	51337824	51253052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_51253903_51266332_51266409_51306587_51306703_51337786
73469	chrX	+	540	2	Intergenic	novelGene_3970	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	47	junction_1	0	178	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATAAACCCTTTTCTCAC	NA	False	NA	NA	False	NA	NA	NA	88052075	88080589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_88052327_88080300
73471	chr15	-	623	1	Intergenic	novelGene_3304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCACTCAGGGGAGGCCC	NA	False	NA	NA	False	NA	NA	NA	73791781	73791158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_73791200_73791800
73472	chrX	+	1784	1	NIC	ENSMUSG00000087390.2	novel	3123	2	NA	NA	2029	-2213	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCATCCTCGACAAGGTA	9834	False	NA	NA	False	NA	NA	NA	37567366	37569150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_37567400_37569200
73474	chrX	-	1582	2	NNC	ENSMUSG00000062184.12	novel	4351	3	NA	NA	291663	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGGCTGTGAGTAATCTC	NA	False	NA	NA	False	NA	NA	NA	50477779	50476092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_50476604_50476708
73477	chr17	-	244	1	NIC	ENSMUSG00000052105.18	novel	5441	16	NA	NA	-1678	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTCAACTCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	66655218	66654974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_66655000_66655200
73478	chr3	+	432	2	FSM	ENSMUSG00000074466.13	ENSMUST00000145400.8	923	2	402	89	282	-11	multi-exon	FALSE	canonical	3	16	junction_1	0	62	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACCTTGGGATGAATCGC	5659	False	NA	NA	False	NA	NA	NA	89299558	89305442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89299814_89305265
73479	chr10	-	1185	1	ISM	ENSMUSG00000046841.6	ENSMUST00000053871.5	3089	2	6556	17	6530	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	5	45	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTTATGACCTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	84363370	84362185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_84362200_84363400
73480	chr4	+	990	6	NIC	ENSMUSG00000028863.14	novel	872	6	NA	NA	8	379	combination_of_known_junctions	FALSE	canonical	3	30	junction_5	120.208818312135	229	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCATCAACAGATTCTT	NA	False	NA	NA	False	NA	NA	NA	124978965	124997675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_124997222
73481	chr5	+	356	1	Intergenic	novelGene_885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATGAGAGAGTTAGGAG	NA	False	NA	NA	False	NA	NA	NA	144616118	144616474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_144616100_144616500
73483	chr19	+	452	3	ISM	ENSMUSG00000032946.17	ENSMUST00000113467.2	409	4	1052	-26	-20	0	3prime_fragment	FALSE	canonical	3	21	junction_1	111.5	44	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	NA	False	NA	NA	NA	6451704	6453668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6451894_6453060_6453117_6453461
73484	chr19	-	805	2	FSM	ENSMUSG00000039097.6	ENSMUST00000044143.6	745	2	23	-83	23	83	multi-exon	FALSE	canonical	1	2	junction_1	0	40	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGTCCTTTTAATGGTC	NA	False	NA	NA	False	NA	NA	NA	29312047	29309023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_29309567_29311785
73485	chr18	-	1036	6	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248913	18120	-3831	7022	internal_fragment	FALSE	canonical	3	20	junction_1	5.17687164221791	48	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTCTGCATCCCACT	NA	False	NA	NA	False	NA	NA	NA	25638127	25630254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
73486	chr9	-	1009	1	ISM	ENSMUSG00000034342.10	ENSMUST00000206720.2	11372	16	90065	0	2271	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTCTGGTTCACTTG	NA	False	NA	NA	False	NA	NA	NA	44055281	44054272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_44054300_44055300
73487	chr10	-	1649	1	ISM	ENSMUSG00000028630.10	ENSMUST00000004281.10	6129	3	8164	3734	7314	1401	mono-exon	FALSE	NA	NA	NA	NA	NA	18	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTTTTTGTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	118696890	118695241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_118695200_118696900
73488	chr1	+	1438	4	FSM	ENSMUSG00000026614.8	ENSMUST00000061093.7	5836	4	807	3591	617	-589	multi-exon	FALSE	canonical	1	2	junction_1	3.68178700572909	5	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATAGCTATTAAGATGGAA	NA	False	NA	NA	False	NA	NA	NA	185187851	185197368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_185187877_185188548_185188627_185194883_185195124_185196273
73489	chr9	-	889	4	FSM	ENSMUSG00000032575.17	ENSMUST00000159283.8	2247	4	13	1345	13	-7	multi-exon	FALSE	canonical	3	771	junction_3	24.1660919471891	1900	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGAGCTGGCACAGTAT	NA	False	NA	NA	False	NA	NA	NA	106769165	106765958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_106766425_106767359_106767502_106768269_106768398_106769012
73490	chr3	+	437	3	NNC	ENSMUSG00000027774.17	novel	1971	14	NA	NA	12	264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	230.5	13	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATATATAATATTATATA	NA	False	NA	NA	False	NA	NA	NA	67337460	67382401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67337656_67338982_67339109_67382285
73491	chr9	-	1526	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_5	7.55248303539968	36	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	NA	NA	NA	34901337	34889330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895970_34896290_34896441_34901247
73492	chr5	+	427	3	NNC	ENSMUSG00000079111.4	novel	1829	5	NA	NA	62	-806	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	309.5	2	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTAGATGAATTGGGACA	NA	False	NA	NA	False	NA	NA	NA	143389654	143406850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_143389808_143398245_143398337_143406667
73493	chr2	+	1503	13	FSM	ENSMUSG00000026807.9	ENSMUST00000074156.7	1567	13	60	4	17	-4	multi-exon	FALSE	canonical	0	0	junction_4	2.54405625374562	36	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGATAGCCTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	28590235	28703173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28590287_28592700_28592786_28599938_28599989_28602286_28602401_28606428_28606498_28623818_28623901_28624385_28624458_28625514_28625716_28629544_28629677_28632671_28632762_28649953_28650096_28699671_28699753_28702839
73496	chr11	+	647	5	NNC	ENSMUSG00000085860.2	novel	612	4	NA	NA	77	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	47.9843724560403	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATATTTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	97489413	97513698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97489494_97489781_97489915_97505749_97505855_97509262_97509326_97513432
73497	chr13	-	1207	1	Intergenic	novelGene_1304	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTCCCCTTTCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	6626468	6625261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_6625300_6626500
73498	chr2	+	1145	6	FSM	ENSMUSG00000017943.16	ENSMUST00000018087.13	2220	6	52	1023	-3	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	8	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCAGTGTCTCTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	163280449	163295872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_163280646_163287953_163288147_163289418_163289593_163292485_163292584_163293420_163293536_163295503
73500	chr16	+	1540	1	Antisense	novelGene_ENSMUSG00000022844.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGCTCGAAGGCCCGTA	7074	False	NA	NA	False	NA	NA	NA	35218469	35220009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_35218500_35220000
73502	chr15	-	662	2	Antisense	novelGene_ENSMUSG00000001655.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	97	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTTTGTGGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	102840088	102837212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_102837498_102839711
73503	chr2	+	545	6	NNC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	39	-120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	564.505943281379	2	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACTATGAATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	145745255	145758225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_145745283_145753616_145753684_145754312_145754449_145757453_145757572_145757723_145757808_145758112
73504	chr4	+	504	4	NNC	ENSMUSG00000028861.14	novel	937	8	NA	NA	1398	-68	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	618.464765905598	1	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGCCAGAGAACCCTTCA	NA	False	NA	NA	False	NA	NA	NA	125942424	125949257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125942564_125947263_125947352_125948753_125948946_125949172
73505	chr5	+	522	4	NNC	ENSMUSG00000004951.11	novel	903	3	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1033.35774164721	98	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCGTCTGACTCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	135916863	135918412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135916928_135917212_135917289_135917902_135917967_135918094
73508	chr15	-	1004	1	Intergenic	novelGene_3207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCTTCTTTACCAAAG	NA	False	NA	NA	False	NA	NA	NA	8047528	8046524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_8046500_8047500
73512	chr7	-	1006	6	ISM	ENSMUSG00000030592.19	ENSMUST00000214374.2	15300	109	116211	0	37879	0	3prime_fragment	FALSE	canonical	2	13	junction_5	1.35646599662505	20	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTATTGTGTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	28708229	28702768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28702979_28703158_28703211_28703849_28703951_28704207_28704273_28704919_28705077_28707808
73513	chr17	+	849	5	FSM	ENSMUSG00000044477.13	ENSMUST00000057897.10	2640	5	175	1616	-2	-15	multi-exon	FALSE	canonical	2	8	junction_3	41.3037528561268	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATTTGTTTTGAGCATG	NA	False	NA	NA	False	NA	NA	NA	30224212	30427378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30411536_30411705_30426991
73514	chr16	+	1325	12	FSM	ENSMUSG00000055447.20	ENSMUST00000230641.2	1032	12	-94	-199	37	-6	multi-exon	FALSE	canonical	3	19	junction_2	27.2824225191312	96	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAACCAATTGGAATCCC	NA	False	NA	NA	False	NA	NA	NA	49676055	49731438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
73515	chr2	-	840	4	FSM	ENSMUSG00000002732.15	ENSMUST00000002809.14	860	4	-5	25	-5	-6	multi-exon	FALSE	canonical	3	16	junction_2	10.2089285540757	164	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAATTTTGGTGTATTAAT	NA	False	NA	NA	False	NA	NA	NA	76503419	76493412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_76493697_76496020_76496155_76502040_76502193_76503149
73516	chr5	-	2359	18	ISM	ENSMUSG00000029093.15	ENSMUST00000037370.14	5707	27	38	18623	21	-18623	5prime_fragment	TRUE	canonical	0	0	junction_17	4.31862466893592	4	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGCCCCCTCCAGGCAC	NA	False	NA	NA	False	NA	NA	NA	36555430	36193146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_36193213_36194749_36194879_36195464_36195599_36196654_36196776_36199435_36199544_36200786_36200879_36203825_36203903_36205144_36205248_36207791_36207939_36213313_36213494_36219881_36219972_36222682_36222802_36225431_36225497_36228669_36228744_36235217_36235383_36311166_36311267_36386488_36386557_36554909
73517	chr11	+	592	5	FSM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	163	44	115	-44	multi-exon	FALSE	canonical	1	1	junction_1	3.83242742918897	81	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATAAAGTCCAAGATTCC	NA	False	NA	NA	False	NA	NA	NA	116548096	116559169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116548134_116548363_116548433_116550123_116550203_116550558_116550654_116558857
73518	chr16	-	1105	3	NNC	ENSMUSG00000116831.2	novel	1769	4	NA	NA	27	9457	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	5.5	5	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGCCATCTTTCAAGC	NA	False	NA	NA	False	NA	NA	NA	22713109	22684275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22685246_22705778_22705854_22713049
73519	chr6	+	437	3	NNC	ENSMUSG00000073155.13	novel	2521	3	NA	NA	-19	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	522.5	10	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAAGCCAGTTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	35229631	35238563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_35229718_35237344_35237399_35238266
73520	chr2	+	728	5	FSM	ENSMUSG00000033213.17	ENSMUST00000047498.15	792	5	-42	106	-42	0	multi-exon	FALSE	canonical	3	117	junction_4	21.9146070008111	1432	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	NA	False	NA	NA	NA	122479727	122483005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_122479862_122479991_122480054_122480176_122480263_122481135_122481197_122482620
73522	chr17	-	1158	6	NIC	ENSMUSG00000096549.10	novel	686	4	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	1.83303027798234	29	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTATAAGGCGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	48005701	48000502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_48000800_48000982_48001187_48001498_48001637_48002281_48002390_48003259_48003405_48005435
73523	chr11	+	854	5	NNC	ENSMUSG00000086617.2	novel	472	3	NA	NA	-45	681	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	9.83298021964857	323	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAATGCCTGTGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	101501394	101507463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101501538_101501917_101502004_101506606_101506824_101507017_101507086_101507123
73524	chr6	-	484	1	ISM	ENSMUSG00000079560.14	ENSMUST00000114434.9	2591	5	43560	10	14300	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGATTACGATCCGTGT	NA	False	NA	NA	False	NA	NA	NA	52146535	52146051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_52146100_52146500
73525	chr6	+	1456	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181225.2	1499	3	16	27	16	-27	multi-exon	FALSE	canonical	3	16	junction_1	3.5	68	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAATATCTGGTTGTGT	44	False	NA	NA	False	NA	NA	NA	13871583	13896394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_13871627_13881271_13881381_13895090
73526	chr6	-	298	4	FSM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	16	1	16	0	multi-exon	FALSE	canonical	3	83	junction_2	1436.47492920072	345	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCCATGTTATT	12	True	NA	NA	False	NA	NA	NA	24527553	24518665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_24518824_24519190_24519257_24527271_24527317_24527524
73528	chrX	-	390	3	NIC	ENSMUSG00000015290.16	novel	2442	4	NA	NA	0	64	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	890	24	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGGCTCATAGTGATAAT	NA	False	NA	NA	False	NA	NA	NA	73412119	73411006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_73411193_73411758_73411865_73412021
73529	chr5	+	314	1	FSM	ENSMUSG00000105031.2	ENSMUST00000199823.2	204	1	-26	-84	-26	84	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	113905157	113905471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_113905200_113905500
73530	chr1	+	1814	4	ISM	ENSMUSG00000055567.19	ENSMUST00000152844.2	1912	6	12709	14	12709	-14	3prime_fragment	FALSE	canonical	0	0	junction_1	1.88561808316413	5	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	66731566	66735808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_66731749_66732850_66732963_66733523_66733724_66734488
73531	chr11	-	627	4	NNC	ENSMUSG00000020477.11	novel	995	4	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_3	1216.61890317205	457	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCCTCTGGGTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	5657685	5654327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5654733_5657297_5657410_5657486_5657556_5657644
73532	chr11	-	312	2	NNC	ENSMUSG00000016559.15	novel	874	3	NA	NA	535	149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACATCACTGTGATAGAA	NA	False	NA	NA	False	NA	NA	NA	115914764	115913869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914148_115914730
73533	chr6	+	848	4	ISM	ENSMUSG00000079652.9	ENSMUST00000115286.4	1180	5	2051	21	2049	-16	3prime_fragment	FALSE	canonical	0	0	junction_1	0.471404520791032	1	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAATAAACCTCCAATGGA	2009	False	NA	NA	False	NA	NA	NA	29283190	29290658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_29283339_29285877_29286128_29287660_29287780_29290327
73535	chr15	-	706	6	FSM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	30	-2	-16	2	multi-exon	FALSE	canonical	3	632	junction_4	33.5177564881661	3123	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGTATTTTTCACTCG	NA	False	NA	NA	False	NA	NA	NA	98626049	98622248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625563_98625630_98625837
73536	chr13	-	956	6	ISM	ENSMUSG00000033063.9	ENSMUST00000091554.6	6344	24	90	57052	90	-44605	5prime_fragment	FALSE	canonical	1	1	junction_2	1.93907194296653	2	28	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGGTTGTTAGACATTGT	1140	False	NA	NA	False	NA	NA	NA	65051679	64941047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_64941228_64941977_64942182_64946880_64947029_65006411_65006606_65035506_65035618_65051560
73537	chr5	+	1310	8	FSM	ENSMUSG00000004948.13	ENSMUST00000005073.13	1323	8	8	5	8	-5	multi-exon	TRUE	canonical	3	12	junction_4	3.97953950776689	74	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTTCTGAGTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	136008960	136017473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136009297_136011492_136011612_136013015_136013120_136013201_136013386_136014398_136014517_136016108_136016201_136016325_136016463_136017253
73538	chr4	+	1030	10	NNC	ENSMUSG00000028229.12	novel	1734	10	NA	NA	15	-727	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	19.8313880153983	1	50	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACGACTGTATGGCTTTT	-1	True	NA	NA	False	NA	NA	NA	19575176	19606205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_19575328_19580396_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642_19602674_19605402_19605537_19606084
73539	chr3	+	908	8	NNC	ENSMUSG00000027935.15	novel	1415	8	NA	NA	17	-20	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	7.54036755451237	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCCACTGTTTTGCATG	NA	False	NA	NA	False	NA	NA	NA	90121033	90133256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90121091_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
73540	chr5	+	1178	1	FSM	ENSMUSG00000038165.9	ENSMUST00000182745.2	1051	1	0	-127	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGATGAGATTCAGTGTT	9687	False	NA	NA	False	NA	NA	NA	24852681	24853859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_24852700_24853900
73541	chr2	+	741	1	Intergenic	novelGene_2813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAGCATACTCAATCCT	NA	False	NA	NA	False	NA	NA	NA	170807188	170807929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_170807200_170807900
73542	chr19	+	1313	1	Intergenic	novelGene_1244	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGCCTACAGATGAATGG	127	False	NA	NA	False	NA	NA	NA	30042900	30044213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_30042900_30044200
73544	chr13	-	1209	9	ISM	ENSMUSG00000021339.5	ENSMUST00000021772.4	7035	11	13903	5455	-4676	678	3prime_fragment	FALSE	canonical	3	167	junction_5	20.5026675093755	22	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTTGAGACTAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	25190459	25176920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_25177172_25177652_25177767_25178707_25178826_25179327_25179481_25181010_25181128_25182907_25183039_25185609_25185784_25188925_25189039_25190421
73545	chr13	-	669	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	15	-67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	273.270356057879	11	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACAAAGTCAATGAATGAC	NA	False	NA	NA	False	NA	NA	NA	108295142	108189238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_108189489_108217886_108217928_108228067_108228158_108236900_108237023_108294976
73546	chr2	-	1365	1	Intergenic	novelGene_2664	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACCTTTGTGAAGTATAA	NA	False	NA	NA	False	NA	NA	NA	79184595	79183230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_79183200_79184600
73548	chr7	+	663	4	FSM	ENSMUSG00000046056.16	ENSMUST00000182229.8	732	4	63	6	1	2	multi-exon	FALSE	canonical	1	2	junction_1	6.94422221866655	30	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATCGTGGCTCACTGT	8737	False	NA	NA	False	NA	NA	NA	30450958	30455553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30451341_30454233_30454306_30454426_30454472_30455389
73550	chr15	+	1187	4	FSM	ENSMUSG00000054196.8	ENSMUST00000067072.5	1166	4	-38	17	-38	-17	multi-exon	FALSE	canonical	3	14	junction_1	1.88561808316413	37	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCTTCTAAAACCTAAGTA	NA	False	NA	NA	False	NA	NA	NA	38940288	38950499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_38940555_38943877_38944100_38947660_38947878_38950017
73553	chr12	-	455	1	Intergenic	novelGene_4292	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCACAGGCCAAACCCCA	NA	False	NA	NA	False	NA	NA	NA	12227337	12226882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_12226900_12227300
73556	chr6	+	1364	9	ISM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	79	3482	46	-2028	5prime_fragment	FALSE	canonical	3	31	junction_7	7.0178344238091	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAACAAACTGGGTCTCT	1360	False	NA	NA	False	NA	NA	NA	72391369	72404213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024
73558	chr7	-	1315	1	Antisense	novelGene_ENSMUSG00000021217.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTTTCCTTATAAATGC	NA	False	NA	NA	False	NA	NA	NA	36472893	36471578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_36471600_36472900
73559	chr2	-	863	5	NNC	ENSMUSG00000044320.15	novel	755	6	NA	NA	-2034	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	13.0958008537088	1	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTCTCCCAGTAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	30688921	30685595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_30685818_30686156_30686296_30686412_30686579_30687879_30687993_30688698
73560	chr7	-	2582	1	Intergenic	novelGene_3029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	128	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTATGGGCTGCATGG	NA	False	NA	NA	False	NA	NA	NA	123025820	123023238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_123023200_123025800
73561	chr17	-	2170	2	Genic_Genomic	ENSMUSG00000073375.4	novel	1760	1	NA	NA	-5852	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	3	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGCCTTGGTCTTCTTTC	5420	False	NA	NA	False	NA	NA	NA	67945570	67937960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_67940014_67945453
73562	chr1	+	1283	1	ISM	ENSMUSG00000056268.16	ENSMUST00000168527.8	8206	22	211052	0	53006	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGTGGTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	139102498	139103781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_139102500_139103800
73565	chr10	+	764	2	ISM	ENSMUSG00000020087.6	ENSMUST00000218280.2	512	4	2753	-395	2753	-142	3prime_fragment	FALSE	canonical	3	276	junction_1	0	45	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGTCTTCCCATTGCCA	NA	False	NA	NA	False	NA	NA	NA	61535241	61538410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_61535408_61537812
73566	chr17	-	522	3	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	2	12	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	21.5	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTCAGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	79202527	79192313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_79192646_79201971_79202099_79202464
73568	chr9	+	1072	3	ISM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	558	14	445	-14	3prime_fragment	FALSE	canonical	3	8	junction_2	6.5	18	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATATAAATAAAACCAAAGAA	NA	False	NA	NA	False	NA	NA	NA	114197928	114206283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114197968_114198056_114198132_114205325
73569	chr10	+	852	7	NNC	ENSMUSG00000055862.8	novel	1196	10	NA	NA	5	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	9.3407708461347	37	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCCTGACATTTCTCA	NA	False	NA	NA	False	NA	NA	NA	80538591	80541191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540845
73572	chr13	-	904	2	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	23	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATCTGCAAAGATTTGG	NA	False	NA	NA	False	NA	NA	NA	59059831	59057676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_59058480_59059730
73573	chr4	-	1183	2	ISM	ENSMUSG00000028950.4	ENSMUST00000030792.2	2863	6	7664	22	7664	-22	3prime_fragment	FALSE	canonical	3	9	junction_1	0	1	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAATAAAGACGTGAAACG	5436	False	NA	NA	False	NA	NA	NA	152115361	152112392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_152113455_152115240
73574	chr7	+	892	3	Antisense	novelGene_ENSMUSG00000092376.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAGACCAAGACACGGTT	NA	False	NA	NA	False	NA	NA	NA	86546669	86750516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_86547280_86699775_86699848_86750306
73575	chr1	+	978	1	ISM	ENSMUSG00000037509.22	ENSMUST00000162760.8	2981	5	6485	35	6465	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCCAATAAATAAATAATAA	NA	False	NA	NA	False	NA	NA	NA	34847286	34848264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_34847300_34848300
73576	chr18	+	1513	1	Intergenic	novelGene_4570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTAAAGCAATATTGGC	NA	False	NA	NA	False	NA	NA	NA	75598296	75599809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_75598300_75599800
73578	chr2	+	1779	1	ISM	ENSMUSG00000027022.15	ENSMUST00000239009.2	3347	10	350996	7	7868	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAACTCCTACGAATCTG	NA	False	NA	NA	False	NA	NA	NA	67355173	67356952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_67355200_67357000
73579	chr4	+	1314	7	FSM	ENSMUSG00000040706.5	ENSMUST00000038161.5	1407	7	87	6	87	-6	multi-exon	FALSE	canonical	1	3	junction_5	1.49071198499986	20	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATGTGTGCCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	141474069	141486568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_141474411_141476885_141477089_141482135_141482185_141483109_141483306_141484696_141484877_141485649_141485735_141486308
73580	chr8	+	1242	6	FSM	ENSMUSG00000031622.17	ENSMUST00000212095.2	1257	6	11	4	11	-4	multi-exon	FALSE	canonical	3	644	junction_5	28.5587114555261	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTTTATTTAGTTATGTG	NA	False	NA	NA	False	NA	NA	NA	73449928	73466527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996
73581	chr6	+	1302	1	Intergenic	novelGene_4197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTTGTGGACAAATTTT	NA	False	NA	NA	False	NA	NA	NA	84685888	84687190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_84685900_84687200
73587	chr6	-	745	1	ISM	ENSMUSG00000055799.14	ENSMUST00000069536.12	3042	12	162101	31	3117	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	28	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTCACAAGAGAAAATAAAAT	7266	False	NA	NA	False	NA	NA	NA	72604136	72603391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_72603400_72604100
73588	chr7	+	891	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177205.2	1159	3	248	20	248	-20	multi-exon	FALSE	canonical	3	276	junction_2	107	98	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACATGTTGGCTCCGCA	NA	False	NA	NA	False	NA	NA	NA	24206802	24215085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24206862_24209970_24210179_24214461
73589	chr2	+	881	1	Antisense	novelGene_ENSMUSG00000026869.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAACAGAAGTCCCAGGCA	NA	False	NA	NA	False	NA	NA	NA	34761135	34762016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_34761100_34762000
73590	chr9	+	1528	1	Intergenic	novelGene_1089	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAATAAATTCAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	61212293	61213821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_61212300_61213800
73591	chr11	-	867	2	FSM	ENSMUSG00000038268.5	ENSMUST00000071562.3	2670	2	49	1754	1	105	multi-exon	FALSE	canonical	3	105	junction_1	0	215	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTTCTCCTGCTGCCCC	1686	False	NA	NA	False	NA	NA	NA	75069612	75068521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_75069214_75069437
73593	chrX	-	1108	1	Antisense	novelGene_ENSMUSG00000025525.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGACGGAGAGCGCAGAG	NA	False	NA	NA	False	NA	NA	NA	111222201	111221093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_111221100_111222200
73594	chr7	+	1143	2	NIC	ENSMUSG00000046027.18	novel	2832	7	NA	NA	0	15	intron_retention	FALSE	canonical	3	188	junction_1	0	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGACAAAGAGGCAGGCCT	NA	False	NA	NA	False	NA	NA	NA	83281207	83282694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_83281994_83282337
73595	chr18	+	782	1	Intergenic	novelGene_4581	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAATATAGATCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	90612199	90612981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_90612200_90613000
73599	chr8	-	824	1	ISM	ENSMUSG00000110332.2	ENSMUST00000209208.2	979	2	423	2	423	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTCCGGCTGGCGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	91543598	91542774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_91542800_91543600
73600	chr2	-	803	1	FSM	ENSMUSG00000068267.6	ENSMUST00000089510.5	4886	1	1976	2107	1976	-2107	mono-exon	FALSE	NA	NA	NA	NA	NA	115	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGCATCCTTCATGGTCT	5142	False	NA	NA	False	NA	NA	NA	131020011	131019208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_131019200_131020000
73601	chr2	-	506	1	Antisense	novelGene_ENSMUSG00000051329.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGCAAGGAATTGTTTG	NA	False	NA	NA	False	NA	NA	NA	90509587	90509081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_90509100_90509600
73605	chr19	-	1166	11	NNC	ENSMUSG00000036098.16	novel	3636	24	NA	NA	-2098	-4458	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4.3	1	46	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCTCCAGTCCTGCTACAG	7411	False	NA	NA	False	NA	NA	NA	10196990	10192206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10192292_10192380_10192470_10193105_10193156_10193424_10193514_10193783_10193857_10193981_10194143_10194783_10194894_10195511_10195624_10195827_10196029_10196401_10196493_10196885
73606	chr15	+	1044	6	FSM	ENSMUSG00000022235.16	ENSMUST00000070918.14	1155	6	83	28	83	-28	multi-exon	TRUE	canonical	0	0	junction_1	2.60768096208106	19	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTAATAAAGTGATTTTT	138	False	NA	NA	False	NA	NA	NA	31569026	31590237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_31569086_31581985_31582220_31584110_31584219_31585440_31585584_31588313_31588406_31589829
73607	chr11	-	1414	1	Genic_Genomic	ENSMUSG00000017466.10	novel	NA	NA	NA	NA	53027	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGGTTGATTCCTTGGC	9457	False	NA	NA	False	NA	NA	NA	118193305	118191891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_118191900_118193300
73608	chr16	-	1008	2	Intergenic	novelGene_3612	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	85	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGATTATGCAAGATAT	NA	False	NA	NA	False	NA	NA	NA	20273124	20270280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_20271065_20272900
73609	chr19	-	1231	10	FSM	ENSMUSG00000024910.6	ENSMUST00000025844.6	1241	10	7	3	1	0	multi-exon	FALSE	canonical	0	0	junction_5	1.15470053837925	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCTGTGTGGATTCA	NA	False	NA	NA	False	NA	NA	NA	5518528	5515270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5515480_5515557_5515759_5515832_5515898_5516047_5516174_5516258_5516340_5516416_5516514_5516608_5516764_5517050_5517165_5517865_5517951_5518430
73611	chr2	-	1237	6	ISM	ENSMUSG00000034848.18	ENSMUST00000125446.3	4061	28	-46	57565	-21	-11092	5prime_fragment	FALSE	canonical	2	9	junction_3	7.79743547584717	36	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAATTTGTTGAATTGCA	NA	False	NA	NA	False	NA	NA	NA	66086982	66072551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_66073133_66077651_66077775_66079738_66079906_66082237_66082349_66082446_66082577_66086857
73612	chr17	+	1101	4	NNC	ENSMUSG00000003279.18	novel	3496	9	NA	NA	-47904	245	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	3.68178700572909	7	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGCTGGGGAGAAAAGGG	4058	False	NA	NA	False	NA	NA	NA	71068162	71094632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71068441_71072992_71073085_71093782_71094205_71094323
73613	chr2	-	568	6	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	147.163038837882	4	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	NA	False	NA	NA	NA	26806371	26803392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26803518_26803588_26803671_26803924_26803985_26805595_26805742_26805966_26806019_26806268
73617	chr17	+	461	3	NNC	ENSMUSG00000024256.8	novel	3117	5	NA	NA	301	-1306	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	1	11	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAATATTGTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	93509804	93511685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_93509847_93510212_93510312_93511365
73618	chr8	-	579	2	FSM	ENSMUSG00000058833.12	ENSMUST00000143598.8	572	2	-8	1	-8	-1	multi-exon	FALSE	canonical	3	24	junction_1	0	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTTCCCATCAGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	70958770	70956945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70957160_70958405
73619	chr8	-	694	5	NNC	ENSMUSG00000050914.17	novel	927	5	NA	NA	-22	-1	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	13.6083614002568	312	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGAATTAAAATTTCTGT	NA	False	NA	NA	False	NA	NA	NA	46452926	46449951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452895
73620	chr2	-	719	4	ISM	ENSMUSG00000027620.17	ENSMUST00000152919.3	699	5	-33	260	2	-260	5prime_fragment	FALSE	canonical	3	90	junction_1	977.365279150477	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATAACATATTAAATGTG	NA	False	NA	NA	False	NA	NA	NA	156022102	156019540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_156019827_156020799_156020873_156021096_156021161_156021806
73621	chr19	-	754	3	NNC	ENSMUSG00000042694.18	novel	690	2	NA	NA	-2	1949	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	68	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGCCATTTTGAAAATATA	NA	False	NA	NA	False	NA	NA	NA	47525535	47518841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_47519137_47524634_47524811_47525252
73624	chr11	+	1139	5	Antisense	novelGene_ENSMUSG00000046605.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCGATTGGTGCAGAGC	NA	False	NA	NA	False	NA	NA	NA	121529963	121563954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_121530676_121535352_121535421_121561697_121561798_121561884_121562000_121563810
73625	chr5	+	1857	2	FSM	ENSMUSG00000039899.6	ENSMUST00000035799.6	3788	2	73	1858	73	-1858	multi-exon	FALSE	canonical	3	6	junction_1	0	4	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATAATATATGTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	21577712	21581514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_21578307_21580251
73626	chrX	-	1193	1	Intergenic	novelGene_3979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGAAGGGAGAATAAGA	NA	False	NA	NA	False	NA	NA	NA	93242712	93241519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_93241500_93242700
73627	chr15	-	897	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-22	368	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	4.5	64	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCTCTCCAAGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	95530731	95522250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_95522899_95530158_95530347_95530670
73628	chr7	-	882	1	ISM	ENSMUSG00000030397.12	ENSMUST00000239292.2	3966	18	32780	385	2411	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	54	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAATAAACAATCAACGAC	9704	False	NA	NA	False	NA	NA	NA	19159966	19159084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19159100_19160000
73630	chr7	+	940	1	NIC	ENSMUSG00000030555.17	novel	3627	4	NA	NA	3	-820	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGATTTTATTATCATTA	NA	False	NA	NA	False	NA	NA	NA	67297175	67298115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_67297200_67298100
73631	chr13	+	466	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	8	0	8	0	multi-exon	FALSE	canonical	3	173	junction_1	0	27	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	NA	False	NA	NA	NA	34346954	34362151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_34347233_34361963
73632	chr15	-	325	4	ISM	ENSMUSG00000091119.3	ENSMUST00000165386.2	798	9	-30	13226	-30	-13118	5prime_fragment	FALSE	canonical	2	14	junction_3	5.24933858267454	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTTAGAGAAATCATTC	8066	False	NA	NA	False	NA	NA	NA	3333038	3323334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_3323404_3327582_3327689_3330586_3330676_3332977
73633	chr7	+	713	4	FSM	ENSMUSG00000015980.15	ENSMUST00000126213.8	744	4	29	2	29	-2	multi-exon	FALSE	canonical	2	4	junction_1	3.55902608401044	69	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCAAACTGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	138813887	138822885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_138814008_138816785_138816905_138818491_138818616_138822535
73634	chr2	+	539	4	FSM	ENSMUSG00000026644.8	ENSMUST00000228935.2	534	4	0	-5	0	5	multi-exon	FALSE	canonical	3	13	junction_2	3.77123616632825	107	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTGTATGGATATTTA	1038	False	NA	NA	False	NA	NA	NA	3337204	3342035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_3337259_3341369_3341491_3341591_3341655_3341734
73635	chr16	+	312	1	Intergenic	novelGene_3630	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGGTATAGAAGTGA	NA	False	NA	NA	False	NA	NA	NA	29799961	29800273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_29800000_29800300
73638	chrX	+	459	1	Intergenic	novelGene_3921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTATGTACTTTCATAAT	NA	False	NA	NA	False	NA	NA	NA	41581424	41581883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_41581400_41581900
73639	chr15	+	625	2	ISM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	2486	9	2466	-9	3prime_fragment	FALSE	canonical	3	479	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTACAGTAATATGCTTCA	NA	False	NA	NA	False	NA	NA	NA	72964726	72965915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_72964809_72965372
73640	chr6	-	492	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	-27	-42	-27	42	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCTGAAAAAAAAAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	66852754	66852262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_66852300_66852800
73642	chr5	+	1213	1	Intergenic	novelGene_747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTCCGTTTCCTCCCCAGG	NA	False	NA	NA	False	NA	NA	NA	92456368	92457581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_92456400_92457600
73643	chr11	-	1088	1	Intergenic	novelGene_2225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAATGGACAAATCTGAT	4213	False	NA	NA	False	NA	NA	NA	16908516	16907428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_16907400_16908500
73644	chr14	-	999	3	NNC	ENSMUSG00000104598.2	novel	1383	3	NA	NA	-81	3119	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	1	62	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGGAGTAAGTACCTTTC	NA	False	NA	NA	False	NA	NA	NA	53277004	53266754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_53267504_53271974_53272071_53276850
73645	chr19	-	400	1	ISM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	48978	1066	718	124	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGACCTCTTAGTTGAC	NA	False	NA	NA	False	NA	NA	NA	40211082	40210682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_40210700_40211100
73646	chr18	-	1460	1	Antisense	novelGene_ENSMUSG00000097746.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTGAAGCCGGGGAACT	NA	False	NA	NA	False	NA	NA	NA	3339490	3338030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_3338000_3339500
73647	chr8	-	374	3	NNC	ENSMUSG00000006589.9	novel	849	5	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	725	9	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGCTGCTTCTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	123303598	123301378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_123301562_123303276_123303361_123303491
73650	chr19	-	1234	4	NNC	ENSMUSG00000084981.8	novel	750	4	NA	NA	-600	-1902	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	0.942809041582063	3	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTCAGGAGTGCGATGAG	NA	False	NA	NA	False	NA	NA	NA	12699211	12695055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_12695667_12695835_12695881_12698460_12698881_12699053
73651	chr2	-	736	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	34	6	34	-6	multi-exon	FALSE	canonical	3	317	junction_1	0	1742	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTACAGTATGTGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	24865076	24864134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_24864694_24864899
73652	chrX	+	931	9	NNC	ENSMUSG00000084330.2	novel	434	5	NA	NA	-2220	5361	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	3.82222121285516	50	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATCTTGTGTCCTGAGT	NA	False	NA	NA	False	NA	NA	NA	134625526	134635584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_134625674_134627458_134627605_134628012_134628123_134628832_134628921_134629024_134629068_134629492_134629566_134633679_134633709_134635168_134635227_134635347
73653	chr17	+	2303	1	Intergenic	novelGene_12	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTGAGGAAACAAGTCT	NA	False	NA	NA	False	NA	NA	NA	10554363	10556666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_10554400_10556700
73655	chr15	-	991	5	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	139.440623564297	1	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8161	False	NA	NA	False	NA	NA	NA	85695822	85691172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695238_85695758
73656	chr11	-	1208	2	Intergenic	novelGene_2390	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	19	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCATGTAATTTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	68961592	68960286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_68960617_68960714
73657	chr4	-	905	1	Antisense	novelGene_ENSMUSG00000085334.8_AS_novelGene_ENSMUSG00000028820.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATTCATTCCTCTTTCGT	NA	False	NA	NA	False	NA	NA	NA	126931682	126930777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_126930800_126931700
73659	chr4	-	864	1	Antisense	novelGene_ENSMUSG00000078772.3_AS_novelGene_ENSMUSG00000028229.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTAGGCTAATATAGTTC	4893	False	NA	NA	False	NA	NA	NA	19606157	19605293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_19605300_19606200
73660	chr8	-	857	5	FSM	ENSMUSG00000004996.10	ENSMUST00000126435.8	2819	5	380	1582	303	-466	multi-exon	FALSE	canonical	3	192	junction_2	18.1159460144923	62	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAAAGTTCATCTTCAC	7346	False	NA	NA	False	NA	NA	NA	84983573	84978116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84978341_84980491_84980717_84980804_84980982_84982872_84983049_84983518
73662	SIRV3	+	350	2	ISM	SIRV3A	SIRV305	436	3	574	0	574	0	3prime_fragment	FALSE	canonical	3	1609	junction_1	0	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4577	6718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV3_+_4780_6570
73663	chr1	-	516	1	Intergenic	novelGene_470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAATGATAGTAAA	NA	False	NA	NA	False	NA	NA	NA	153289822	153289306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_153289300_153289800
73664	chr2	-	1280	2	FSM	ENSMUSG00000015839.7	ENSMUST00000152371.2	1447	2	10	157	10	-157	multi-exon	FALSE	canonical	3	19	junction_1	0	73	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAAATTCACTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	75534823	75521552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75522717_75534707
73665	chr17	+	723	4	Intergenic	novelGene_69	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_3	1.24721912892465	2	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAATGCTGGCCAGTCCT	NA	False	NA	NA	False	NA	NA	NA	22716362	22732051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_22716509_22727271_22727551_22727632_22727795_22731915
73666	chr17	+	369	1	Intergenic	novelGene_71	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGTTTTTAGTAGA	5856	False	NA	NA	False	NA	NA	NA	22740698	22741067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_22740700_22741100
73667	chr2	+	811	6	NNC	ENSMUSG00000041921.17	novel	1898	6	NA	NA	0	-2408	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_5	25.0886428489068	12	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGGGAGTGTCCCATGC	NA	False	NA	NA	False	NA	NA	NA	71283676	71343891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71343646
73668	chr4	+	581	2	NNC	ENSMUSG00000028298.11	novel	687	4	NA	NA	12640	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	0	20	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGATGTGCCGCCTTCT	1274	False	NA	NA	False	NA	NA	NA	34906427	34907370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_34906704_34907065
73669	chr13	-	710	4	NNC	ENSMUSG00000047547.15	novel	2186	5	NA	NA	-14	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.467423514243	20	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTCAGCGCTCAGTTT	7443	False	NA	NA	False	NA	NA	NA	54759119	54741363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_54741705_54746881_54746975_54754456_54754504_54758890
73670	chr7	-	468	4	FSM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	-33	0	-18	0	multi-exon	FALSE	canonical	0	0	junction_1	378.537830195198	40	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	4756055	4754790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4754975_4755106_4755161_4755722_4755849_4755951
73671	chr17	-	1101	3	NNC	ENSMUSG00000045378.6	novel	1019	3	NA	NA	8	-16	intron_retention	FALSE	canonical	0	0	junction_1	9	86	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTTTATTGAGCACAAG	6221	False	NA	NA	False	NA	NA	NA	29161230	29152976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29153890_29160215_29160344_29161170
73672	chrX	+	1400	10	ISM	ENSMUSG00000000223.14	ENSMUST00000000228.5	4389	21	17415	618	17415	82	3prime_fragment	FALSE	canonical	0	0	junction_1	2.0245407953654	2	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAGGAACCACTGGCCC	NA	False	NA	NA	False	NA	NA	NA	133341993	133353531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_133342136_133342410_133342578_133344400_133344513_133346963_133347101_133347376_133347443_133347710_133347777_133348596_133348741_133350400_133350639_133352916_133353038_133353324
73673	chr1	-	472	1	ISM	ENSMUSG00000026204.16	ENSMUST00000027404.12	3554	23	16670	45	10454	-45	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGTTAGTGTGTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	75224187	75223715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_75223700_75224200
73674	chr8	-	763	5	NIC	ENSMUSG00000031816.16	novel	358	4	NA	NA	0	-15	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	29.0301567339896	44	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAGACTTAAAAAATTGTC	NA	False	NA	NA	False	NA	NA	NA	121835049	121830605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121830920_121831130_121831245_121832312_121832427_121833608_121833713_121834932
73675	chr5	+	1280	8	ISM	ENSMUSG00000029231.16	ENSMUST00000202186.4	1561	9	9921	133	439	-133	3prime_fragment	FALSE	canonical	1	1	junction_2	1.04978131833565	1	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGGCACCCCTCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	75322933	75335678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75322953_75324195_75324514_75327171_75327433_75328497_75328629_75331155_75331328_75331422_75331613_75334049_75334166_75335605
73676	chr7	-	876	3	Intergenic	novelGene_2958	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	14	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGTTTCCATCTCTGAA	5249	False	NA	NA	False	NA	NA	NA	44354600	44352740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_44353288_44353534_44353804_44354540
73678	chr19	+	995	3	ISM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	488	9	488	-9	3prime_fragment	FALSE	canonical	3	21	junction_2	5	26	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCCCTTCTTGCGTGGTG	6804	False	NA	NA	False	NA	NA	NA	46317113	46318875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_46317268_46317526_46318033_46318540
73679	chr14	-	1225	1	Intergenic	novelGene_509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTAGTAATATACAGAAATA	NA	False	NA	NA	False	NA	NA	NA	7709213	7707988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_7708000_7709200
73680	chr6	-	1376	1	Intergenic	novelGene_4255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCCCGCACACCCATTC	NA	False	NA	NA	False	NA	NA	NA	125470105	125468729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_125468700_125470100
73683	chr17	-	248	1	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5246	3	1711	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45878951	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45878700_45879000
73685	chr15	+	843	2	FSM	ENSMUSG00000015002.19	ENSMUST00000174135.2	1425	2	38	544	24	-27	multi-exon	FALSE	canonical	3	8	junction_1	0	7	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGAATAAACCCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	65658920	65662656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_65659096_65661988
73686	chrX	+	1328	2	Genic_Genomic	ENSMUSG00000091497.2	novel	993	1	NA	NA	-13781	205	multi-exon	FALSE	canonical	0	0	junction_1	0	11	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTATATTTCATTTATT	NA	False	NA	NA	False	NA	NA	NA	89921966	89936945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_89922040_89935690
73687	chr9	+	1447	1	FSM	ENSMUSG00000064225.7	ENSMUST00000079597.7	8367	1	563	6357	563	-6357	mono-exon	FALSE	NA	NA	NA	NA	NA	5	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCGAAGCCTGTGAGAT	NA	False	NA	NA	False	NA	NA	NA	95442272	95443719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_95442300_95443700
73688	chr5	-	785	1	Intergenic	novelGene_830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGTGTGTGGTTCTTT	5648	False	NA	NA	False	NA	NA	NA	115295314	115294529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_115294500_115295300
73689	chr18	-	1830	9	Antisense	novelGene_ENSMUSG00000024471.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTCGGGAAGCCGGAG	NA	False	NA	NA	False	NA	NA	NA	44488790	44470127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_44470378_44474369_44474545_44475408_44475508_44477505_44477554_44478076_44478212_44479074_44479279_44487179_44487347_44487866_44488000_44488171
73690	chr17	-	1413	2	Intergenic	novelGene_96	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	8	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTGCAATAAACAAACAAAC	2049	False	NA	NA	False	NA	NA	NA	23761214	23756399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_23757682_23761083
73691	chr11	+	944	2	FSM	ENSMUSG00000085665.2	ENSMUST00000128996.2	3105	2	-74	2235	-74	-2235	multi-exon	FALSE	canonical	3	13	junction_1	0	30	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTATTGGATGAGACTT	6935	False	NA	NA	False	NA	NA	NA	23017923	23023339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_23018407_23022878
73692	chr18	+	398	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	3	-3	3	3	multi-exon	FALSE	canonical	3	169	junction_1	0	494	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTTTTTGTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	44513571	44529155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_44513754_44528939
73694	chrX	-	508	1	FSM	ENSMUSG00000070106.3	ENSMUST00000093598.3	75	1	-71	-362	-71	362	mono-exon	FALSE	NA	NA	NA	NA	NA	52	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAATGGGTTTCTTTTT	9900	False	NA	NA	False	NA	NA	NA	51830715	51830207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51830200_51830700
73695	chr8	-	1832	1	Antisense	novelGene_ENSMUSG00000031910.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCCCACTAATACATTGC	NA	False	NA	NA	False	NA	NA	NA	107606489	107604657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107604700_107606500
73698	chr2	+	1292	1	Antisense	novelGene_ENSMUSG00000040321.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATATCCCATGCCTAGAAA	NA	False	NA	NA	False	NA	NA	NA	114030228	114031520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_114030200_114031500
73699	chr11	+	1227	3	NNC	ENSMUSG00000056598.17	novel	668	6	NA	NA	-244	-16602	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3	14	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATCTTCACCTTACAAGC	3177	False	NA	NA	False	NA	NA	NA	60243910	60246228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60244259_60244927_60245027_60245448
73700	chr5	-	913	1	FSM	ENSMUSG00000029627.13	ENSMUST00000198959.2	2243	1	-16	1346	-16	-1346	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGATACTTATTACTGG	1575	False	NA	NA	False	NA	NA	NA	145138694	145137781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_145137800_145138700
73701	chr14	-	1470	1	Intergenic	novelGene_527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACACCGTCAAGCAGAGACA	NA	False	NA	NA	False	NA	NA	NA	21578194	21576724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_21576700_21578200
73702	chr8	-	895	1	Intergenic	novelGene_1658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACCGTTGAGTCATC	NA	False	NA	NA	False	NA	NA	NA	70975710	70974815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_70974800_70975700
73703	chr8	-	1114	1	Intergenic	novelGene_1705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTGGCCATTGCAAGCC	NA	False	NA	NA	False	NA	NA	NA	89779616	89778502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89778500_89779600
73704	chr10	-	2033	1	ISM	ENSMUSG00000036019.9	ENSMUST00000130665.2	2779	2	45248	6	10003	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATATGTTGTGTGGGG	NA	False	NA	NA	False	NA	NA	NA	105025562	105023529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_105023500_105025600
73706	chr11	-	621	3	FSM	ENSMUSG00000042709.16	ENSMUST00000156966.2	522	3	7	-106	6	106	multi-exon	FALSE	canonical	3	293	junction_2	53.5	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATCTGTCACTGAACAG	NA	False	NA	NA	False	NA	NA	NA	60307855	60299934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60300232_60300411_60300457_60307576
73707	chr5	-	917	4	NNC	ENSMUSG00000029319.9	novel	1043	6	NA	NA	4218	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	167.763722737267	2	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATAGACGCGACTCTTCAT	5449	False	NA	NA	False	NA	NA	NA	100808067	100802593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100803010_100803055_100803338_100805683_100805873_100808037
73709	chr5	+	813	3	FSM	ENSMUSG00000004951.11	ENSMUST00000005077.7	903	3	85	5	-14	-3	multi-exon	FALSE	canonical	3	2181	junction_2	11	86	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCGTCTGACTCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	135916857	135918412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135917289_135917902_135917967_135918094
73711	chr1	+	1296	1	ISM	ENSMUSG00000052726.17	ENSMUST00000120709.8	5790	27	364614	0	97816	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTTTTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	140538509	140539805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_140538500_140539800
73715	chr5	-	617	3	Antisense	novelGene_ENSMUSG00000089889.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACAATAATTTCCGGCC	1824	False	NA	NA	False	NA	NA	NA	143318456	143315068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_143315109_143316456_143316639_143318061
73716	chr7	+	686	3	FSM	ENSMUSG00000054169.8	ENSMUST00000206847.2	662	3	-28	4	-6	-4	multi-exon	FALSE	canonical	2	6	junction_1	14	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAAAGGTTGGCTCCTT	1101	False	NA	NA	False	NA	NA	NA	24476624	24484073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24476765_24480294_24480655_24483887
73720	chr14	+	1079	1	Intergenic	novelGene_597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACTGAAAAGGGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	65169655	65170734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_65169700_65170700
73721	chr16	+	976	4	NNC	ENSMUSG00000059280.5	novel	759	2	NA	NA	-947	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.4142135623731	74	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGTCTGGCTGGTTTGT	28	False	NA	NA	False	NA	NA	NA	17797344	17799138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_17797431_17798076_17798268_17798352_17798475_17798561
73722	chr1	+	571	4	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-121	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	828.625099520619	98	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACATGTTTTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	4927915	4968127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948337_4967990
73723	chr9	-	518	1	Intergenic	novelGene_1137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATACACATTTTCAATCT	NA	False	NA	NA	False	NA	NA	NA	96971278	96970760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_96970800_96971300
73724	chr10	+	819	1	Intergenic	novelGene_3430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGAAGGCTTAGTGCT	NA	False	NA	NA	False	NA	NA	NA	41366641	41367460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_41366600_41367500
73727	chr4	+	1294	6	FSM	ENSMUSG00000028545.14	ENSMUST00000030274.7	1826	6	155	377	-46	1	multi-exon	FALSE	canonical	3	7	junction_2	5.19230199429887	24	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAAGGCCTTTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	111272357	111317118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_111272598_111288213_111288348_111290365_111290751_111305702_111305852_111311281_111311496_111316946
73728	chr11	+	463	1	Antisense	novelGene_ENSMUSG00000060923.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACACAAAAAAGGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	30599198	30599661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_30599200_30599700
73730	chr16	+	1784	2	Antisense	novelGene_ENSMUSG00000116684.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	6	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAACCGTAACACCAATAT	8598	False	NA	NA	False	NA	NA	NA	43531182	43547715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_43531347_43546095
73732	chr1	+	1101	10	NIC	ENSMUSG00000026017.14	novel	2763	18	NA	NA	9	-2876	combination_of_known_junctions	FALSE	canonical	2	3	junction_9	2.80651798673669	11	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCGGTATGGCGTTCA	NA	False	NA	NA	False	NA	NA	NA	60137431	60178494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_60137467_60144469_60144587_60147241_60147360_60148485_60148609_60164009_60164071_60165078_60165194_60167147_60167233_60171002_60171193_60175422_60175544_60178358
73734	chr11	-	1360	1	Intergenic	novelGene_2414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCCCCCCCACACTCAC	NA	False	NA	NA	False	NA	NA	NA	79595222	79593862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_79593900_79595200
73735	chr5	+	1723	1	NIC	ENSMUSG00000029729.13	novel	8261	6	NA	NA	18	-17667	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGCCTGGAGTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	138083363	138085086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_138083400_138085100
73736	chr8	+	2385	19	FSM	ENSMUSG00000031849.10	ENSMUST00000003659.9	2416	19	-11	42	-11	-41	multi-exon	FALSE	canonical	0	0	junction_8	1.24225998749988	4	28	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCTGGGGAGGAGAGGCA	NA	False	NA	NA	False	NA	NA	NA	70826196	70834674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70826298_70826502_70826589_70827022_70827075_70827454_70827625_70828379_70828518_70828691_70828767_70828846_70829006_70829087_70829193_70829285_70829394_70829746_70829907_70831263_70831383_70831547_70831601_70831683_70831866_70832043_70832223_70832330_70832380_70832754_70832952_70833894_70834068_70834321_70834462_70834535
73737	chr4	+	1079	1	ISM	ENSMUSG00000035615.13	ENSMUST00000044773.12	4812	16	99937	15	80918	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTAATCTTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	45284842	45285921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_45284800_45285900
73738	chr6	-	1997	5	NNC	ENSMUSG00000045095.17	novel	745	5	NA	NA	10	1033	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	18.0468141232739	4	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATGTTCATGTTTATTG	2675	False	NA	NA	False	NA	NA	NA	93890661	93749563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93890300
73739	chr18	+	618	1	ISM	ENSMUSG00000025880.12	ENSMUST00000026999.10	4278	4	371	27418	371	-25469	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGGATCTTCCATGTAGG	NA	False	NA	NA	False	NA	NA	NA	75500970	75501588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_75501000_75501600
73740	chr8	-	1955	3	FSM	ENSMUSG00000031654.17	ENSMUST00000034076.16	2800	3	385	460	162	2	multi-exon	FALSE	canonical	3	8	junction_1	0	17	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAACGCTGACCCTGTGT	485	False	NA	NA	False	NA	NA	NA	88198852	88195492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_88197080_88198319_88198440_88198604
73742	chr5	-	1460	9	NNC	ENSMUSG00000029456.13	novel	3826	21	NA	NA	3	872	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.1245154965971	4	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCGTGAACAGGCAGTCA	NA	False	NA	NA	False	NA	NA	NA	121798539	121777650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121777810_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790170_121794076_121794318_121798355
73743	chr8	+	1432	11	FSM	ENSMUSG00000011832.17	ENSMUST00000239400.2	1542	11	109	1	-63	-1	multi-exon	FALSE	canonical	3	12	junction_10	5.9464274989274	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGTGCTCCGGATGTAG	NA	False	NA	NA	False	NA	NA	NA	4216675	4243700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_4216764_4233487_4233671_4235960_4236151_4237240_4237466_4237575_4237651_4238286_4238413_4241236_4241381_4241584_4241675_4243119_4243218_4243305_4243367_4243548
73744	chr12	+	758	5	NNC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	16157	-12318	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	20.1556443707464	1	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTATATGGATGTT	NA	False	NA	NA	False	NA	NA	NA	105727690	105736388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105736283
73745	chr11	+	1280	6	ISM	ENSMUSG00000006784.15	ENSMUST00000132143.2	4340	10	3996	15511	143	3966	internal_fragment	FALSE	canonical	3	16	junction_2	4.88262224629348	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCGGCCTGGCTCTTGG	NA	False	NA	NA	False	NA	NA	NA	100440515	100445120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689
73747	chr8	-	821	7	FSM	ENSMUSG00000031586.18	ENSMUST00000033995.14	1039	7	218	0	-195	0	multi-exon	FALSE	canonical	3	456	junction_1	404.856524654791	148	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTACAGCGTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	34419615	34293966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_34294211_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
73748	chr8	+	1328	1	Intergenic	novelGene_1684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAGCCAGAGGGTGGT	NA	False	NA	NA	False	NA	NA	NA	86475098	86476426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_86475100_86476400
73749	chr17	-	623	2	Antisense	novelGene_ENSMUSG00000071037.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	22	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTGTGTATGTAAATTC	NA	False	NA	NA	False	NA	NA	NA	85470101	85466390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_85466943_85470030
73750	chr13	-	898	3	Antisense	novelGene_ENSMUSG00000113723.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	6.5	9	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGAACTGTTTTTCTCGA	NA	False	NA	NA	False	NA	NA	NA	66098159	66081914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_66082703_66083892_66083934_66098090
73751	chr12	-	591	3	Intergenic	novelGene_4295	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	5.5	29	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTTACTTTTATGTGTA	NA	False	NA	NA	False	NA	NA	NA	17514661	17508338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_17508571_17509178_17509309_17514432
73753	chr7	+	1187	2	NNC	ENSMUSG00000070828.11	novel	1829	4	NA	NA	0	772	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	9	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTCAAATTTGGATAGA	NA	False	NA	NA	False	NA	NA	NA	11131841	11133678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_11131929_11132578
73754	chr16	-	308	1	FSM	ENSMUSG00000050312.13	ENSMUST00000231289.2	1530	1	15	1207	15	-1207	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGGAATACTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	62607114	62606806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_62606800_62607100
73755	chr8	+	1285	3	Antisense	novelGene_ENSMUSG00000110212.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTTGCTCCTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	91486237	91489208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_91487374_91488280_91488379_91489157
73756	chr11	-	871	2	NNC	ENSMUSG00000085152.2	novel	581	2	NA	NA	-619	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATCAGGGGCTGGTGAGA	8420	False	NA	NA	False	NA	NA	NA	88887989	88883922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88884304_88887499
73757	chr17	-	820	1	Intergenic	novelGene_104	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTATCTCATGGGGCTG	4788	False	NA	NA	False	NA	NA	NA	25403418	25402598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_25402600_25403400
73759	chr10	-	1161	4	Intergenic	novelGene_3428	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGTCCCATGAGTGT	NA	False	NA	NA	False	NA	NA	NA	41352199	41346005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_41346220_41347804_41348289_41351438_41351630_41351927
73760	chr5	-	538	1	Antisense	novelGene_ENSMUSG00000029714.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATCTGTAAAGTGCCTCG	8600	False	NA	NA	False	NA	NA	NA	137524704	137524166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_137524200_137524700
73761	chr2	+	990	2	FSM	ENSMUSG00000086202.2	ENSMUST00000134308.2	424	2	-188	-378	7	-2	multi-exon	FALSE	canonical	3	37	junction_1	0	124	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTCTTTATATCA	NA	False	NA	NA	False	NA	NA	NA	45586623	45588457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_45587155_45587998
73762	chr16	-	773	5	NNC	ENSMUSG00000022962.16	novel	3246	21	NA	NA	-1383	-2	at_least_one_novel_splicesite	FALSE	canonical	2	34	junction_2	715.329775348405	1	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	3848	False	NA	NA	False	NA	NA	NA	91421288	91418282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418807_91419780_91419923_91420258_91420390_91421214
73763	chr9	-	987	7	FSM	ENSMUSG00000002033.15	ENSMUST00000002101.12	1023	7	36	0	36	0	multi-exon	FALSE	canonical	2	5	junction_5	2.73353657780945	30	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTCTATCCAAATAGACA	NA	False	NA	NA	False	NA	NA	NA	44891693	44880869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44881216_44881988_44882072_44882560_44882605_44884803_44884936_44885460_44885689_44886544_44886569_44891563
73764	chr19	+	935	6	FSM	ENSMUSG00000047656.10	ENSMUST00000237234.2	972	6	41	-4	0	2	multi-exon	FALSE	canonical	3	11	junction_2	13.8650640099496	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGGTTCCTCATCCGTG	NA	False	NA	NA	False	NA	NA	NA	6973539	6976416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
73765	chr3	+	1636	2	Antisense	novelGene_ENSMUSG00000027799.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGCAAAGCGCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	55874313	55884724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_55875774_55884548
73766	chr11	-	666	1	Antisense	novelGene_ENSMUSG00000004018.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	142	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGTATATTGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	26337429	26336763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_26336800_26337400
73767	chr4	-	1003	2	FSM	ENSMUSG00000085085.3	ENSMUST00000149472.3	1009	2	6	0	6	0	multi-exon	FALSE	canonical	3	8	junction_1	0	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCCTTATGACTTACAC	NA	False	NA	NA	False	NA	NA	NA	128951770	128943889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_128944703_128951580
73768	chr13	-	836	1	Genic_Genomic	ENSMUSG00000021417.16	novel	NA	NA	NA	NA	2421	796	mono-exon	FALSE	NA	NA	NA	NA	NA	9	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGTCTCTTTTCCTAGTTC	NA	False	NA	NA	False	NA	NA	NA	35169918	35169082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_35169100_35169900
73769	chr19	-	782	5	NNC	ENSMUSG00000118346.2	novel	818	5	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	97.0090201991547	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCATGGCATGGATTTCTT	5081	False	NA	28	True	NA	NA	NA	8751824	8749893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8750148_8750391_8750471_8750653_8750789_8750868_8751057_8751698
73770	chr3	-	672	3	FSM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	103	8	103	-8	multi-exon	FALSE	canonical	3	890	junction_1	0.5	4723	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTCTTCCCTGCCGTG	NA	False	NA	NA	False	NA	NA	NA	8988875	8867213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_8867475_8965045_8965228_8988646
73771	chr5	+	1293	4	Antisense	novelGene_ENSMUSG00000029674.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGCCCAAAGTCGGCCAC	8581	False	NA	NA	False	NA	NA	NA	134685282	134688822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_134686240_134686346_134686507_134686764_134686817_134688698
73773	chr11	-	712	1	ISM	ENSMUSG00000034201.14	ENSMUST00000056649.13	2847	7	4233	11	3757	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	56	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTACAGTTTTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	5011094	5010382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5010400_5011100
73774	chr6	+	1093	7	ISM	ENSMUSG00000071553.11	ENSMUST00000096066.5	1388	11	5354	3	294	-3	3prime_fragment	FALSE	canonical	2	2	junction_5	2.98142396999972	30	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTGGCTTCTGGTCATTT	1943	False	NA	NA	False	NA	NA	NA	30546934	30564472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_30547206_30549240_30549340_30550743_30550855_30551964_30552056_30554162_30554363_30557670_30557756_30564236
73775	chr7	+	1460	5	NNC	ENSMUSG00000031072.15	novel	1016	5	NA	NA	3	443	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	44.5449211470848	10	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAATTTTATTTTCTAGA	NA	False	NA	NA	False	NA	NA	NA	144468912	144483675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_144469067_144470164_144470271_144471346_144471418_144472963_144473079_144482661
73776	chr11	-	1315	1	NIC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	9	-26553	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAATCCTTGTTACACGTG	NA	False	NA	NA	False	NA	NA	NA	103844841	103843526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_103843500_103844800
73777	chr14	+	1107	1	ISM	ENSMUSG00000090534.2	ENSMUST00000164755.2	2322	2	1323	98	675	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATAGAAATGTTTGTATA	NA	False	NA	-34	True	NA	NA	NA	118474966	118476073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_118475000_118476100
73779	chr15	-	1690	4	Intergenic	novelGene_3346	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACACACTCAGGTCGGC	NA	False	NA	NA	False	NA	NA	NA	87798053	87786878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_87787127_87791514_87791645_87793596_87793784_87796928
73781	chr11	+	1225	4	ISM	ENSMUSG00000048834.17	ENSMUST00000208926.2	1039	5	-340	18866	-1	-18662	5prime_fragment	FALSE	canonical	2	5	junction_1	0.816496580927726	16	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTCATTTTCTCTAC	NA	False	NA	NA	False	NA	NA	NA	16207722	16213556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_16208087_16209854_16210022_16211437_16211489_16212913
73784	chr13	+	1063	1	Intergenic	novelGene_1565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTCTTTGTTTCACCAT	NA	False	NA	NA	False	NA	NA	NA	114348097	114349160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_114348100_114349200
73785	chr7	-	1006	1	Genic_Genomic	ENSMUSG00000030814.18	novel	NA	NA	NA	NA	45333	490	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTCATCTCAACTTCAGT	NA	False	NA	NA	False	NA	NA	NA	127261143	127260137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_127260100_127261100
73787	chr7	+	841	3	NIC	ENSMUSG00000044562.13	novel	3202	12	NA	NA	8832	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	49	5	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTCACTTGTCAAGATTT	3256	False	NA	NA	False	NA	NA	NA	45285743	45288514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45286006_45286143_45286317_45288108
73788	chr13	+	422	1	Intergenic	novelGene_1542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCCAAGTCTTGCATGTA	NA	False	NA	NA	False	NA	NA	NA	113712534	113712956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113712500_113713000
73789	chr5	-	717	1	ISM	ENSMUSG00000043323.18	ENSMUST00000069483.12	4720	19	86018	15	24477	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	20	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTGATTTGGATGAAATG	NA	False	NA	-63	True	NA	NA	NA	110510351	110509634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110509600_110510400
73790	chr4	+	1758	1	Intergenic	novelGene_1900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGACCTTACAAATGTACA	NA	False	NA	NA	False	NA	NA	NA	88001497	88003255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_88001500_88003300
73791	chr13	+	1194	9	FSM	ENSMUSG00000021213.13	ENSMUST00000021634.4	1262	9	64	4	30	-4	multi-exon	FALSE	canonical	1	2	junction_3	2.98956518577535	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAAAAAATATTTTCTTT	7421	False	NA	NA	False	NA	NA	NA	4241212	4255591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_4241310_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
73794	chr10	-	987	4	ISM	ENSMUSG00000019979.13	ENSMUST00000160788.2	1596	5	2708	-48	2367	48	3prime_fragment	FALSE	canonical	3	71	junction_2	11.5181016954473	12	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTCTATTGGACA	NA	False	NA	NA	False	NA	NA	NA	90915924	90902703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_90903127_90913395_90913594_90915308_90915499_90915748
73795	chr7	+	1012	4	NNC	ENSMUSG00000042918.18	novel	536	2	NA	NA	-444	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5.09901951359278	12	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATCTCGCGTGTGGCCCG	NA	False	NA	NA	False	NA	NA	NA	45293363	45295156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45293393_45293627_45293853_45293942_45293998_45294453
73797	chr19	+	1111	1	FSM	ENSMUSG00000075227.7	ENSMUST00000162726.5	1281	1	169	1	169	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	39	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCAGCAGTGCCTTTTCC	2702	False	NA	NA	False	NA	NA	NA	6111390	6112501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6111400_6112500
73798	chr5	+	968	1	ISM	ENSMUSG00000050822.12	ENSMUST00000058418.8	2789	11	19422	0	19422	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGCTGTCCTGAGGAAGT	5155	False	NA	NA	False	NA	NA	NA	142707277	142708245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_142707300_142708200
73801	chr13	-	709	2	NIC	ENSMUSG00000097326.3	novel	672	3	NA	NA	52	-5	intron_retention	FALSE	canonical	3	25	junction_1	0	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTTCTCTTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	48427308	48425893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_48426533_48427238
73802	chr7	-	514	4	NNC	ENSMUSG00000036835.8	novel	708	4	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	328.362942827327	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	1398	False	NA	NA	False	NA	NA	NA	30262558	30261289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30261560_30261748_30261779_30262231_30262364_30262476
73803	chr7	+	1797	11	ISM	ENSMUSG00000041187.17	ENSMUST00000086104.6	3628	18	10239	99	4595	-7	3prime_fragment	FALSE	canonical	2	3	junction_8	3.00166620396073	13	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCACCCACTGGCCATG	NA	False	NA	NA	False	NA	NA	NA	16587228	16604290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_16587298_16587875_16587954_16589619_16589879_16590184_16590238_16590750_16590824_16591675_16591783_16592303_16592466_16597865_16597965_16599611_16599880_16603412_16603499_16603747
73804	chr16	-	774	5	NIC	ENSMUSG00000022498.17	novel	1145	5	NA	NA	257	-15	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	43.4798804046193	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTAAAACGGCAATGT	8888	False	NA	NA	False	NA	NA	NA	10952160	10923835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_10924136_10934658_10934789_10940533_10940632_10946350_10946568_10952131
73806	chr8	-	589	1	Antisense	novelGene_ENSMUSG00000034041.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAATGAATAAATAAATGAA	3568	False	NA	NA	False	NA	NA	NA	85429283	85428694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_85428700_85429300
73808	chr7	-	1147	1	ISM	ENSMUSG00000048583.17	ENSMUST00000000033.12	3708	4	3486	2098	-980	892	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACAAGGCCCATCCCAA	NA	False	NA	NA	False	NA	NA	NA	142207747	142206600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_142206600_142207700
73809	chr14	-	1622	1	Intergenic	novelGene_532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCCTAGAATTCTGGCA	NA	False	NA	NA	False	NA	NA	NA	27150650	27149028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_27149000_27150600
73810	chr11	-	956	7	ISM	ENSMUSG00000040985.14	ENSMUST00000043377.6	1176	10	9319	17	9319	-17	3prime_fragment	FALSE	canonical	0	0	junction_4	0.942809041582063	2	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAAAGTCAATCCAAC	NA	False	NA	NA	False	NA	NA	NA	8980270	8966070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_8966357_8968146_8968240_8971751_8971920_8973293_8973410_8978032_8978118_8979318_8979491_8980234
73811	chr17	-	1190	7	NNC	ENSMUSG00000061232.17	novel	1570	8	NA	NA	6	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	30.2250815640844	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGTTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	34219249	34215070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34215451_34215589_34215629_34215967_34216132_34216258_34216535_34218244_34218462_34218945_34218978_34219167
73812	chr14	+	1113	4	NNC	ENSMUSG00000114693.2	novel	589	3	NA	NA	-20	12	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	0.942809041582063	16	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTATCTTCTTCCACAT	NA	False	NA	NA	False	NA	NA	NA	65409783	65422797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_65409884_65412146_65412735_65413951_65414128_65422548
73814	chr15	-	786	10	NNC	ENSMUSG00000022487.15	novel	700	10	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	47.0463391210343	166	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACTGGCAAGTACTTTT	8440	False	NA	NA	False	NA	NA	NA	103338819	103310889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328471_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603_103338685_103338782
73815	chr15	+	1509	1	ISM	ENSMUSG00000050697.10	ENSMUST00000051186.9	4655	9	35176	1353	35146	-1346	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCATTTAAAAATATTTTG	NA	False	NA	NA	False	NA	NA	NA	5208518	5210027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_5208500_5210000
73817	chr7	-	1043	1	FSM	ENSMUSG00000062797.15	ENSMUST00000207695.2	2539	1	539	957	398	-957	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTGGCCTCAAACCCC	NA	False	NA	NA	False	NA	NA	NA	89589832	89588789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_89588800_89589800
73818	chr9	-	835	1	Antisense	novelGene_ENSMUSG00000111079.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAGTTAGAAAGTTAGCC	NA	False	NA	NA	False	NA	NA	NA	121688263	121687428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_121687400_121688300
73819	chr19	-	2318	1	NIC	ENSMUSG00000025154.16	novel	5103	12	NA	NA	17	-29719	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCTAATTCCATTTAAT	4544	False	NA	NA	False	NA	NA	NA	41790469	41788151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41788200_41790500
73820	chr11	+	463	3	ISM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	4929	12	2771	-12	3prime_fragment	FALSE	canonical	3	102	junction_1	30	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATGCGTATTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	94029256	94046590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_94029490_94046281_94046324_94046402
73822	chr17	-	595	1	Intergenic	novelGene_287	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGGGGGTGAGCAGG	NA	False	NA	NA	False	NA	NA	NA	66826080	66825485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66825500_66826100
73823	chr9	+	695	4	Intergenic	novelGene_1130	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	6.48074069840786	30	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGGCCCATTACTGGAAC	NA	False	NA	NA	False	NA	NA	NA	95405391	95409443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_95405466_95406451_95406766_95408923_95409053_95409265
73824	chr11	+	598	2	FSM	ENSMUSG00000086859.5	ENSMUST00000149822.3	600	2	2	0	2	0	multi-exon	FALSE	canonical	3	615	junction_1	0	1160	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	877	False	NA	NA	False	NA	NA	NA	116967610	116969781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116968029_116969601
73825	chr14	-	1001	2	Intergenic	novelGene_618	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	114	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGGATTCCTAGAACC	NA	False	NA	NA	False	NA	NA	NA	76753195	76752017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_76752575_76752751
73827	chr2	+	1030	5	ISM	ENSMUSG00000037761.17	ENSMUST00000045644.9	2402	9	7494	15	753	-2	3prime_fragment	TRUE	canonical	3	97	junction_2	5.80409338312195	28	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCATGGAGTGTTTATTC	NA	False	NA	NA	False	NA	NA	NA	158474301	158481116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_158474375_158477226_158477347_158477927_158478068_158478587_158478721_158480552
73828	chr13	+	1127	3	Intergenic	novelGene_1324	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1	5	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTTTCCCCAATCTTCC	NA	False	NA	NA	False	NA	NA	NA	22063954	22070670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_22064052_22068853_22069000_22069786
73829	chr11	+	1805	6	FSM	ENSMUSG00000044707.8	ENSMUST00000050574.7	2672	6	165	702	165	-702	multi-exon	FALSE	canonical	3	6	junction_5	2.71293199325011	9	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATCTTGTTTACA	NA	False	NA	NA	False	NA	NA	NA	43419775	43477122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_43419795_43420181_43420287_43447381_43447596_43470510_43470814_43474006_43474167_43476118
73830	chr10	+	219	1	Intergenic	novelGene_3566	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	274	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTCATCTGCATTGACC	NA	False	NA	NA	False	NA	NA	NA	128004848	128005067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_128004800_128005100
73831	chr3	-	331	3	ISM	ENSMUSG00000037152.12	ENSMUST00000135602.3	500	4	433	-23	433	0	3prime_fragment	FALSE	canonical	3	5471	junction_1	370	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTGATGGACTCTTACTT	NA	False	NA	NA	False	NA	NA	NA	51315654	51312875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_51313041_51314756_51314834_51315565
73833	chr1	+	1160	3	ISM	ENSMUSG00000026255.16	ENSMUST00000118687.8	1726	5	33272	20	-11591	-20	3prime_fragment	FALSE	canonical	2	6	junction_2	2.5	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAAATGATCTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	87225356	87238538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87225486_87237382_87237569_87237693
73835	chr4	-	1632	1	Intergenic	novelGene_1930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGAGTAGGCTGAAATTA	NA	False	NA	NA	False	NA	NA	NA	114866342	114864710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_114864700_114866300
73836	chr4	-	2097	1	Intergenic	novelGene_1864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCCAACAGCGCATGCC	NA	False	NA	NA	False	NA	NA	NA	58674026	58671929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_58671900_58674000
73837	chr4	+	1004	3	NIC	ENSMUSG00000047671.9	novel	990	4	NA	NA	-112	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0	4	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAGTGGTCCATAAAT	NA	False	NA	NA	False	NA	NA	NA	116983878	116985928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116984056_116984472_116984542_116985170
73839	chr5	+	1524	13	NNC	ENSMUSG00000031558.16	novel	9960	36	NA	NA	-2652	-5989	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	60.1911307604553	1	80	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATCTACTCTGAATTTCGA	NA	False	NA	NA	False	NA	NA	NA	48399891	48453865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_48399960_48401969_48402042_48402918_48402991_48404491_48404564_48407119_48407284_48414098_48414228_48414347_48414446_48416885_48417026_48432923_48433018_48439058_48439197_48439286_48439528_48440739_48440861_48453750
73841	chr11	-	434	1	ISM	ENSMUSG00000020846.7	ENSMUST00000021207.7	3512	3	5579	2576	5579	-2576	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGGAAGATGTATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	75913029	75912595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75912600_75913000
73842	chr16	+	811	3	FSM	ENSMUSG00000068663.15	ENSMUST00000130148.2	704	3	0	-107	0	107	multi-exon	FALSE	canonical	3	59	junction_1	9	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGCATGGGTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	10363240	10381416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_10363507_10377884_10378014_10381000
73843	chr2	+	521	2	NNC	ENSMUSG00000014959.13	novel	2417	11	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTTCTAAGTGGCG	NA	False	NA	NA	False	NA	NA	NA	70491982	70522069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_70492096_70521661
73846	chr10	-	625	4	ISM	ENSMUSG00000059602.15	ENSMUST00000121789.2	4006	7	11	116084	11	-56532	5prime_fragment	FALSE	canonical	1	2	junction_2	1.4142135623731	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGTTACCGGAGGCTGC	NA	False	NA	NA	False	NA	NA	NA	86334735	86243540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_86243569_86284729_86284788_86302842_86303300_86334653
73847	chr16	-	1126	5	NNC	ENSMUSG00000022668.11	novel	739	5	NA	NA	12	-548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	49.8272014064607	1	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAAAACTGTACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	44566710	44560175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_44560511_44562866_44562967_44564100_44564232_44565645_44565844_44566348
73848	chr13	+	914	4	FSM	ENSMUSG00000035509.18	ENSMUST00000124981.2	3507	4	-30	2623	-8	-4	multi-exon	FALSE	canonical	2	8	junction_3	0.816496580927726	51	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCAGTTTCTCACTGG	NA	False	NA	NA	False	NA	NA	NA	56670295	56675276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727
73849	chr2	+	904	2	ISM	ENSMUSG00000026837.17	ENSMUST00000238851.2	1281	6	10309	-114	10309	114	3prime_fragment	FALSE	canonical	3	33	junction_1	0	17	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATTGTTATAAATGT	NA	False	NA	NA	False	NA	NA	NA	27922606	27927555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_27922837_27926881
73850	chr8	+	304	2	NNC	ENSMUSG00000031820.10	novel	1433	9	NA	NA	98	-82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCTGAGCCCACCCTTGG	NA	False	NA	NA	False	NA	NA	NA	71849602	71857181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71849655_71856929
73851	chr12	+	1234	2	ISM	ENSMUSG00000021228.16	ENSMUST00000120927.8	1854	4	4863	16	3911	-16	3prime_fragment	FALSE	canonical	3	11	junction_1	0	10	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTTGAAAGAGTAAACATC	2974	False	NA	NA	False	NA	NA	NA	84103780	84106323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_84103886_84105194
73852	chr9	-	1166	11	FSM	ENSMUSG00000043923.9	ENSMUST00000214494.2	1080	11	57	-143	14	-7	multi-exon	FALSE	canonical	2	4	junction_5	17.9677488851553	9	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAAATGTACAGCTGATT	9007	False	NA	NA	False	NA	NA	NA	44329269	44321466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324341_44324433_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
73854	chr16	+	1432	4	ISM	ENSMUSG00000052133.17	ENSMUST00000128347.2	694	5	370	-942	370	-5	3prime_fragment	FALSE	canonical	3	45	junction_1	6.12825877028341	13	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACTGTCTTTGTGCATA	NA	False	NA	NA	False	NA	NA	NA	35482044	35484626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_35482086_35482659_35482705_35483062_35483269_35483486
73856	chr17	-	1213	1	Antisense	novelGene_ENSMUSG00000044645.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	151	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGGGCTGCACCCTCGCC	NA	False	NA	NA	False	NA	NA	NA	51006906	51005693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_51005700_51006900
73857	chr14	-	640	1	ISM	ENSMUSG00000085615.3	ENSMUST00000144926.2	3074	3	8	2876	8	-1930	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAGAAAAGGCAAATTCAG	NA	False	NA	NA	False	NA	NA	NA	122344357	122343717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_122343700_122344400
73860	chr4	-	1084	4	Antisense	novelGene_ENSMUSG00000028524.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	77	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGACTATATTTTGCAT	NA	False	NA	NA	False	NA	NA	NA	102716557	102698538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_102698876_102702150_102702386_102702701_102702798_102716141
73862	chr6	+	510	4	NNC	ENSMUSG00000097048.8	novel	594	5	NA	NA	417	-6	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	36.6454484061648	87	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGCTGTGTATTTTT	NA	False	NA	NA	False	NA	NA	NA	86504872	86541424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86504957_86509136_86509290_86540413_86540520_86541257
73863	chr1	+	630	5	FSM	ENSMUSG00000025779.11	ENSMUST00000026881.11	632	5	0	2	0	-2	multi-exon	FALSE	canonical	2	6	junction_2	0.707106781186548	43	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTGTTCTGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	16758656	16779833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_16758844_16761907_16761998_16771018_16771148_16776396_16776450_16779662
73864	chr8	+	367	2	Intergenic	novelGene_1645	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	15	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTGAATAAAAGATACTTT	NA	False	NA	NA	False	NA	NA	NA	50036762	50040325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_50036947_50040142
73867	chr4	+	1195	2	NNC	ENSMUSG00000028456.19	novel	2173	6	NA	NA	-19107	794	intron_retention	FALSE	canonical	0	0	junction_1	0	3	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCCAATATCATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	43161460	43166916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_43161483_43165743
73869	chr2	+	973	4	NNC	ENSMUSG00000016921.15	novel	2897	5	NA	NA	1994	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	422.268740127527	2	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATGATTGCCTTATTGAA	NA	False	NA	NA	False	NA	NA	NA	162775574	162777128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162775783_162776147_162776232_162776331_162776501_162776616
73870	chr7	+	1352	7	ISM	ENSMUSG00000039013.17	ENSMUST00000121494.2	1572	9	109	301	109	-301	internal_fragment	TRUE	canonical	1	1	junction_2	2.11476292340825	6	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATCAGCCCTGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	43001080	43005741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_43001434_43001591_43001871_43002045_43002094_43004399_43004652_43004750_43005054_43005323_43005424_43005724
73871	chr2	-	992	8	ISM	ENSMUSG00000074968.12	ENSMUST00000111019.2	2432	18	120	87046	120	-61834	5prime_fragment	FALSE	canonical	0	0	junction_4	1.27775312999988	2	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTCAGCAGAGCTAGGAT	NA	False	NA	NA	False	NA	NA	NA	110780597	110605361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_110605468_110611743_110611789_110614009_110614111_110625257_110625417_110693164_110693284_110711149_110711222_110715195_110715391_110780402
73872	chr19	+	2072	13	ISM	ENSMUSG00000024851.15	ENSMUST00000100022.4	4512	23	2428	3345	2428	-114	internal_fragment	FALSE	canonical	1	1	junction_6	2.11476292340825	4	43	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGCAGCCCCCAGCACC	1376	False	NA	NA	False	NA	NA	NA	4153049	4160620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_4153097_4153260_4153486_4154813_4155141_4155229_4155326_4155414_4155523_4156563_4156626_4156711_4156963_4157785_4157976_4158085_4158194_4158422_4158581_4158664_4158868_4159825_4159997_4160494
73873	chr7	+	845	1	FSM	ENSMUSG00000046058.8	ENSMUST00000059596.8	1392	1	443	104	443	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	90	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATTTTCTGGGATTTTAT	NA	False	NA	NA	False	NA	NA	NA	27967748	27968593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27967700_27968600
73874	chr13	-	676	4	ISM	ENSMUSG00000098781.2	ENSMUST00000044819.7	551	6	-63	2656	-63	-302	5prime_fragment	FALSE	canonical	2	5	junction_1	9.46337971105226	5	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTTCTATTGTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	67508718	67468661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_67469019_67493413_67493510_67495906_67496034_67508622
73875	chr2	+	915	1	Intergenic	novelGene_2599	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTAAAGTATTCTAAATA	NA	False	NA	NA	False	NA	NA	NA	31047424	31048339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_31047400_31048300
73877	chr17	+	1747	3	ISM	ENSMUSG00000043740.16	ENSMUST00000129825.2	994	7	4605	-1333	4590	1333	3prime_fragment	FALSE	canonical	1	2	junction_1	1	2	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATTTTTGCCACTGCA	NA	False	NA	NA	False	NA	NA	NA	48628041	48632560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_48628134_48629438_48629498_48630964
73878	chr3	-	609	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185424.2	433	2	-180	4	-2	-4	multi-exon	FALSE	canonical	3	36	junction_1	0	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACAAATTGCCTTGGCT	906	False	NA	NA	False	NA	NA	NA	115681781	115675235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_115675488_115681424
73880	chr17	-	1488	1	ISM	ENSMUSG00000068037.12	ENSMUST00000089015.10	2401	9	25577	0	5554	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCCTTTAACTAGAACAC	NA	False	NA	NA	False	NA	NA	NA	13061453	13059965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_13060000_13061500
73881	chr11	-	411	1	Intergenic	novelGene_2216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGGTGTAAGGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	6845949	6845538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_6845500_6845900
73882	chr10	-	676	2	Intergenic	novelGene_3498	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	113	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATAGCCTACTGTGTGG	7419	False	NA	NA	False	NA	NA	NA	82756726	82753707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_82754279_82756621
73883	chr1	-	636	3	FSM	ENSMUSG00000073616.11	ENSMUST00000148508.2	649	3	1	12	1	-12	multi-exon	FALSE	canonical	3	39	junction_2	285.5	29	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGATTTTAATTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	92569644	92564878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_92565126_92567408_92567482_92569328
73884	chr3	+	2344	11	FSM	ENSMUSG00000027978.10	ENSMUST00000029603.10	2602	11	234	24	234	-24	multi-exon	FALSE	canonical	0	0	junction_1	0.458257569495584	3	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTGGCACCATGCCA	NA	False	NA	NA	False	NA	NA	NA	123240795	123300222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_123241286_123258385_123258537_123271625_123271805_123273213_123273356_123276322_123276520_123279071_123279214_123280605_123280812_123283204_123283284_123285150_123285274_123298926_123299208_123299868
73885	chr9	+	708	2	Antisense	novelGene_ENSMUSG00000032015.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	2	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCTTCTGGAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	43117098	43118345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_43117184_43117722
73886	chr13	-	558	3	ISM	ENSMUSG00000045410.19	ENSMUST00000131982.2	412	4	-50	1231	-10	-1231	5prime_fragment	FALSE	canonical	3	176	junction_2	4	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATACTTGTCCTGTGACCT	NA	False	NA	NA	False	NA	NA	NA	4659183	4652506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_4652797_4657389_4657558_4659083
73888	chr11	-	372	2	FSM	ENSMUSG00000044894.15	ENSMUST00000156503.2	375	2	3	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_1	0	76	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2946	False	NA	NA	False	NA	NA	NA	53321655	53319779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53319978_53321481
73889	chr10	-	1484	6	Antisense	novelGene_ENSMUSG00000037876.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAGAGAAGGGAAGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	67055069	67021500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_67022089_67025512_67025626_67051045_67051159_67053820_67053961_67054055_67054247_67054730
73890	chr12	+	1707	1	Antisense	novelGene_ENSMUSG00000113086.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGCCCTCCAGCCAACA	NA	False	NA	NA	False	NA	NA	NA	41391826	41393533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_41391800_41393500
73897	chr5	+	1480	1	NIC	ENSMUSG00000029559.16	novel	2607	6	NA	NA	73	-2434	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCATGGAGCACTTGAGAG	NA	False	NA	NA	False	NA	NA	NA	115080362	115081842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115080400_115081800
73898	chr7	-	670	2	ISM	ENSMUSG00000051811.15	ENSMUST00000182173.2	391	3	-21	-155	0	0	intron_retention	FALSE	canonical	3	803	junction_1	0	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	4756022	4754790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4755161_4755722
73899	chr9	-	1268	10	ISM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	48	20635	38	-20	5prime_fragment	FALSE	canonical	3	19	junction_2	4.57043640026736	4	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATAAATATAAATATTGAAT	NA	False	NA	NA	False	NA	NA	NA	49397477	49368897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
73900	chr1	+	374	1	Intergenic	novelGene_468	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTGCTTGCTTGCTTGC	NA	False	NA	NA	False	NA	NA	NA	151187961	151188335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_151188000_151188300
73901	chr2	-	427	3	FSM	ENSMUSG00000051769.3	ENSMUST00000063251.3	488	3	51	10	51	-10	multi-exon	FALSE	canonical	3	20	junction_2	2.5	103	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAATACATCCCTATGTA	NA	False	NA	NA	False	NA	NA	NA	164041999	164040792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164040933_164041577_164041737_164041871
73902	chr10	-	973	5	FSM	ENSMUSG00000001663.11	ENSMUST00000001713.10	1037	5	39	25	39	-25	multi-exon	FALSE	canonical	1	1	junction_4	2.87228132326901	34	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGGGGCTTGATTTGGGC	9615	False	NA	NA	False	NA	NA	NA	75634379	75619671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75620068_75622628_75622806_75629910_75630062_75632876_75632965_75634218
73904	chr17	-	913	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	22	-17	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	31.928670501604	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATACTTGTGCCTGTAC	5613	False	NA	NA	False	NA	NA	NA	35055881	35042987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_35043301_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
73905	chr13	-	1711	9	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	1138	11211	1067	-11211	5prime_fragment	TRUE	canonical	0	0	junction_6	1.49478259288767	5	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACCCCAAACCGTGTTCT	2625	False	NA	NA	False	NA	NA	NA	93635178	93577819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_93578130_93579093_93579190_93589314_93589402_93589895_93590084_93590435_93590602_93596127_93596298_93601074_93601226_93609128_93609303_93634809
73906	chr2	-	890	6	FSM	ENSMUSG00000047617.12	ENSMUST00000125710.8	917	6	71	-44	-10	-2	multi-exon	FALSE	canonical	3	10	junction_3	2.82842712474619	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGACTTGAGTTGTGAAGA	5393	False	NA	NA	False	NA	NA	NA	25350949	25349498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666
73907	chr12	+	955	1	ISM	ENSMUSG00000042700.17	ENSMUST00000166429.9	8215	23	281078	334	9951	-330	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCAGGTTTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	82497271	82498226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_82497300_82498200
73908	chr12	+	352	1	ISM	ENSMUSG00000042700.17	ENSMUST00000166429.9	8215	23	281987	28	10860	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTCATTTTAAATGCTC	NA	False	NA	NA	False	NA	NA	NA	82498180	82498532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_82498200_82498500
73909	chr10	+	252	1	Intergenic	novelGene_3515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	95292374	95292626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_95292400_95292600
73911	chr8	+	1526	1	NIC	ENSMUSG00000015016.9	novel	2206	10	NA	NA	40768	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCTGACTGTGACCTG	NA	False	NA	NA	False	NA	NA	NA	123543084	123544610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123543100_123544600
73913	chr17	-	272	1	Intergenic	novelGene_262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATCTTTAAAATAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	53793599	53793327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_53793300_53793600
73916	chr7	+	1307	6	NIC	ENSMUSG00000003273.15	novel	1585	9	NA	NA	-27	-1	intron_retention	FALSE	canonical	3	16	junction_2	4.16653333119993	50	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGTTTCTCGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	45350412	45354032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45350791_45351857_45352044_45352256_45352559_45352882_45353038_45353136_45353303_45353912
73917	chr6	+	571	1	FSM	ENSMUSG00000047905.11	ENSMUST00000120174.2	465	1	-27	-79	-27	79	mono-exon	FALSE	NA	NA	NA	NA	NA	119	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTTAAGAGTTGTAAAAA	NA	False	NA	NA	False	NA	NA	NA	67182575	67183146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67182600_67183100
73918	chr3	-	1549	1	Intergenic	novelGene_3137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTTTTGCTTATTCTGA	NA	False	NA	NA	False	NA	NA	NA	69223793	69222244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_69222200_69223800
73923	chr5	-	751	2	NNC	ENSMUSG00000029510.16	novel	4252	6	NA	NA	3667	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTATGGCTCTCTGTG	7156	False	NA	NA	False	NA	NA	NA	138272832	138271922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138272236_138272394
73924	chr1	-	721	5	ISM	ENSMUSG00000026260.13	ENSMUST00000189503.7	1514	10	10628	210	-140	-210	3prime_fragment	FALSE	canonical	3	1196	junction_3	32.1169737055034	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCTGTGTCTGCGTGG	NA	False	NA	NA	False	NA	NA	NA	92390851	92367210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799
73925	chr2	-	1442	2	Intergenic	novelGene_2609	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATTTGAAAACACTCGTT	NA	False	NA	NA	False	NA	NA	NA	34561894	34560246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_34560878_34561083
73926	chr5	+	1150	1	Intergenic	novelGene_771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCTTGAAGAAACTTCTT	NA	False	NA	NA	False	NA	NA	NA	104738858	104740008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104738900_104740000
73927	chr7	+	737	1	ISM	ENSMUSG00000002409.19	ENSMUST00000085901.13	2534	11	7089	0	6292	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGCCTGAGCGTTTGCA	NA	False	NA	NA	False	NA	NA	NA	27885982	27886719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27886000_27886700
73928	chr13	+	1305	1	Intergenic	novelGene_1462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCCCCAACCTTTAGAGT	NA	False	NA	NA	False	NA	NA	NA	67929109	67930414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_67929100_67930400
73929	chr15	+	1088	5	NNC	ENSMUSG00000054196.8	novel	1166	4	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6.83739716558867	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTGTTTATTTGTTTGA	NA	False	NA	NA	False	NA	NA	NA	38940359	38950516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_38940555_38943877_38944100_38947660_38947878_38950017_38950155_38950199
73931	chr11	-	1015	9	NNC	ENSMUSG00000020698.12	novel	1787	14	NA	NA	51	-17077	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.99804639792987	28	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTATTGAAGACGGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	82655081	82627152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_82627288_82627916_82628014_82630448_82630532_82632888_82632947_82644459_82644564_82645787_82645962_82651175_82651311_82653013_82653078_82654916
73933	chr18	-	1107	1	Antisense	novelGene_ENSMUSG00000024483.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGATGTTTGTATGACAAA	7294	False	NA	NA	False	NA	NA	NA	36693264	36692157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_36692200_36693300
73934	chr5	-	1424	2	ISM	ENSMUSG00000016520.8	ENSMUST00000016664.8	4557	10	6	24583	6	-22974	5prime_fragment	FALSE	canonical	3	72	junction_1	0	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAACATTTGTTTCAAA	4966	False	NA	NA	False	NA	NA	NA	147013390	146978047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_146979309_147013227
73936	chr7	+	404	1	NIC	ENSMUSG00000066979.7	novel	2218	8	NA	NA	170	-194	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTCACACTGGACATAACA	NA	False	NA	NA	False	NA	NA	NA	131162608	131163012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_131162600_131163000
73937	chr5	+	1483	11	ISM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	21905	455	-1721	285	3prime_fragment	FALSE	canonical	3	93	junction_2	10.9585582993385	19	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCGGTGGACAAATATTT	7973	False	NA	NA	False	NA	NA	NA	123236242	123255357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723_123253789_123254264_123254334_123254706
73938	chrX	+	1820	5	Antisense	novelGene_ENSMUSG00000031133.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAAACTTCTTCATTGTT	NA	False	NA	NA	False	NA	NA	NA	56277483	56286007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_56279011_56280215_56280271_56282344_56282448_56284526_56284600_56285945
73940	chr5	+	550	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	-11	25	-11	-25	multi-exon	FALSE	canonical	3	101	junction_2	118	96	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATTGAAAAACTGGAAA	8764	False	NA	NA	False	NA	NA	NA	135197231	135202277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135197453_135199940_135200017_135202024
73941	chr12	+	1311	8	NNC	ENSMUSG00000007411.17	novel	2807	18	NA	NA	3311	-35	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_7	208.410211665673	1	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAGCACTGATGGAAATG	1593	False	NA	NA	False	NA	NA	NA	111594253	111622093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111594349_111594623_111594737_111595443_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111621703
73942	chr1	-	821	1	Intergenic	novelGene_490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAGAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	180751559	180750738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_180750700_180751600
73944	chr3	-	220	1	Intergenic	novelGene_3200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACAGGGTTGACCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	153161263	153161043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_153161000_153161300
73946	chr5	+	534	2	NNC	ENSMUSG00000086494.2	novel	550	2	NA	NA	-16	4	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	108	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATCTACCCTTTGACCCA	NA	False	NA	NA	False	NA	NA	NA	148678633	148679953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_148678795_148679580
73947	chr10	+	727	5	NNC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	-11	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	625.432400423899	9	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATGGAAATGAACTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	128158402	128163016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162130_128162957
73948	chr2	-	1035	1	Intergenic	novelGene_2611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGACTTTGAACTTCTGT	NA	False	NA	NA	False	NA	NA	NA	34661751	34660716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_34660700_34661800
73950	chr1	-	1464	1	FSM	ENSMUSG00000037474.14	ENSMUST00000192014.2	4693	1	166	3063	164	-3063	mono-exon	FALSE	NA	NA	NA	NA	NA	9	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTACTCCCTGATCATAAC	NA	False	NA	NA	False	NA	NA	NA	191307459	191305995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_191306000_191307500
73951	chr5	+	1122	1	ISM	ENSMUSG00000006262.16	ENSMUST00000113229.8	8967	6	40065	2179	39943	-2179	mono-exon	FALSE	NA	NA	NA	NA	NA	28	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTGGCCATGAATCC	NA	False	NA	NA	False	NA	NA	NA	88908778	88909900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_88908800_88909900
73952	chr5	-	379	2	Antisense	novelGene_ENSMUSG00000049971.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	50	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACTCAACAATGCTCAAA	NA	False	NA	NA	False	NA	NA	NA	127760426	127733956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_127734314_127760404
73953	chr10	-	355	1	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	4715	194	1105	-178	mono-exon	FALSE	NA	NA	NA	NA	NA	38	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-61	True	NA	NA	NA	127353540	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353200_127353500
73954	chr12	+	278	1	Antisense	novelGene_ENSMUSG00000118841.1_AS_novelGene_ENSMUSG00002075676.1_AS_novelGene_ENSMUSG00002075983.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	267	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCGCTGAGAGCTGCGGGG	NA	False	NA	NA	False	NA	NA	NA	69407977	69408255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_69408000_69408300
73956	chr4	+	910	3	FSM	ENSMUSG00000028536.13	ENSMUST00000030261.6	958	3	35	13	35	-13	multi-exon	FALSE	canonical	3	18	junction_1	0	38	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTAGCATAAGGAGTCT	8975	False	NA	NA	False	NA	NA	NA	118384474	118387412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_118384535_118386395_118386509_118386675
73957	chr1	-	754	1	Intergenic	novelGene_445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAAGCGGTCCCCTGGTCC	NA	False	NA	NA	False	NA	NA	NA	132975196	132974442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_132974400_132975200
73958	chr9	+	964	3	FSM	ENSMUSG00000032184.6	ENSMUST00000034702.6	1189	3	222	3	204	2	multi-exon	FALSE	canonical	3	61	junction_2	3	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGCCTTCATTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	75533244	75545050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_75533320_75542667_75543000_75544493
73961	chr12	-	1660	5	ISM	ENSMUSG00000021253.8	ENSMUST00000003687.8	3383	7	9586	77	9586	-77	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTTTGGGGAATCATG	NA	False	NA	NA	False	NA	NA	NA	86116229	86103595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_86104713_86105673_86105828_86108801_86108974_86110594_86110703_86116120
73962	chr12	+	1431	1	Antisense	novelGene_ENSMUSG00000041716.8_AS_novelGene_ENSMUSG00000091931.6_AS_novelGene_ENSMUSG00000098530.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAAACGCCACCCGGAAG	NA	False	NA	NA	False	NA	NA	NA	102722603	102724034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_102722600_102724000
73964	chr1	+	519	4	ISM	ENSMUSG00000026126.16	ENSMUST00000027302.14	1559	15	12382	13	-573	-13	3prime_fragment	FALSE	canonical	3	11	junction_1	3.29983164553722	37	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGCAGAAAAAAATAGGGGC	NA	False	NA	NA	False	NA	NA	NA	34511227	34512852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_34511273_34511843_34512050_34512415_34512491_34512659
73965	chr6	+	1207	10	FSM	ENSMUSG00000061758.14	ENSMUST00000139156.8	1280	10	-9	82	-9	-82	multi-exon	TRUE	canonical	1	2	junction_3	7.01497516340649	1	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCGGATGTTTGTCAGA	3060	False	NA	NA	False	NA	NA	NA	34361206	34373800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34367014_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
73966	chr5	+	653	3	NNC	ENSMUSG00000087244.2	novel	944	6	NA	NA	1193	245	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	4	35	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	2106	False	NA	NA	False	NA	NA	NA	137027432	137028393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_137027514_137027633_137027818_137028005
73967	chr9	+	399	4	ISM	ENSMUSG00000043773.6	ENSMUST00000214777.2	1900	5	56	6245	56	-1226	5prime_fragment	FALSE	canonical	0	0	junction_1	5.43650214343336	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGTGCTTGAGAACTTT	6314	False	NA	NA	False	NA	NA	NA	121766344	121769837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_121766386_121767041_121767229_121768484_121768568_121769749
73968	chr9	+	500	1	ISM	ENSMUSG00000043773.6	ENSMUST00000214777.2	1900	5	8407	887	7495	-885	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCTTGTCTTCACCTCA	NA	False	NA	NA	False	NA	NA	NA	121774695	121775195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_121774700_121775200
73969	chr2	-	901	7	FSM	ENSMUSG00000047617.12	ENSMUST00000114261.9	981	7	80	0	-6	0	multi-exon	FALSE	canonical	3	6	junction_6	3.94405318873308	59	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTTGTGAAGATTGGC	5316	False	NA	NA	False	NA	NA	NA	25351026	25349493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666_25350728_25350798
73975	chr14	+	1093	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	25158	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.89121179284	144	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATGAAACTGCTACATC	NA	False	NA	NA	False	NA	NA	NA	65867873	65885889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_65867898_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
73976	chr12	-	971	2	FSM	ENSMUSG00000058669.8	ENSMUST00000072631.6	1264	2	282	11	282	-11	multi-exon	FALSE	canonical	2	4	junction_1	0	7	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGAAATAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	56659787	56658184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_56659065_56659696
73978	chr18	+	741	1	ISM	ENSMUSG00000024232.3	ENSMUST00000025075.3	5074	3	4094	3647	4094	-3647	mono-exon	FALSE	NA	NA	NA	NA	NA	45	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTGGTGTCTTTCATGA	4008	False	NA	NA	False	NA	NA	NA	3512016	3512757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_3512000_3512800
73979	chr5	+	561	3	NNC	ENSMUSG00000029681.13	novel	1758	6	NA	NA	457	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	41	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAAGTGTCTATTTTTG	9288	False	NA	NA	False	NA	NA	NA	135197755	135202302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135197963_135199940_135200017_135202024
73980	chr9	+	1008	9	NNC	ENSMUSG00000043885.15	novel	1745	11	NA	NA	1	-4152	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	3.37036719067819	3	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATCAAAGGCAGCATTACA	NA	False	NA	NA	False	NA	NA	NA	15621035	15645559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15621134_15630928_15631053_15631995_15632087_15633228_15633289_15634809_15634906_15635816_15635902_15638106_15638335_15639996_15640096_15645432
73983	chr10	+	1106	8	NIC	ENSMUSG00000040345.11	novel	1782	15	NA	NA	2252	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	24.0942028763123	28	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATACATAGACTAAATAC	NA	False	NA	NA	False	NA	NA	NA	127162443	127165813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127162521_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
73984	chr1	-	1037	2	ISM	ENSMUSG00000026155.14	ENSMUST00000129254.8	1365	10	61307	-650	-605	-21	3prime_fragment	FALSE	canonical	3	386	junction_1	0	2	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAACAGATGAATCCACAC	4454	False	NA	NA	False	NA	NA	NA	23887463	23884726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_23885645_23887344
73986	chr2	+	711	2	Intergenic	novelGene_2793	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTTTAAATGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	168798135	168800156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168798567_168799876
73989	chr8	+	445	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	0	2	0	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	145	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAGTGTGTCCATTCCTC	227	False	NA	NA	False	NA	NA	NA	88199761	88252180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
73990	chr11	-	498	3	Intergenic	novelGene_2230	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	2	15	junction_2	26	390	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAACATGTTGTTTTTCT	262	False	NA	NA	False	NA	NA	NA	20089380	20087214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_20087398_20088488_20088566_20089142
73992	chr7	-	613	5	FSM	ENSMUSG00000040212.13	ENSMUST00000038876.13	736	5	116	7	14	1	multi-exon	FALSE	canonical	3	47	junction_4	7.77817459305202	146	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCCTGACTCGGCTCCTC	4474	False	NA	NA	False	NA	NA	NA	45570712	45567453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570665
73993	chr1	-	1620	1	Intergenic	novelGene_503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTAGCAAGTCTGGGTGT	NA	False	NA	NA	False	NA	NA	NA	191662351	191660731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_191660700_191662400
73995	chr4	+	1146	8	ISM	ENSMUSG00000028825.8	ENSMUST00000030627.8	1514	10	15284	41	10	-41	3prime_fragment	FALSE	canonical	3	9	junction_1	5.80288457473997	64	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGATGAATACACCTCAT	NA	False	NA	NA	False	NA	NA	NA	134607130	134623442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_134607352_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
73996	chr14	-	905	7	ISM	ENSMUSG00000022092.12	ENSMUST00000078434.8	1970	14	48653	-30	48459	-3	3prime_fragment	FALSE	canonical	2	11	junction_1	3.71558280160133	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCCCCTTGTCCTAATT	NA	False	NA	NA	False	NA	NA	NA	70478267	70455316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70455727_70457465_70457496_70461758_70461857_70462415_70462498_70472588_70472658_70473926_70474053_70478177
73998	chrX	-	700	4	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-670	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	26.4112770527204	7	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTTGATTTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	61571287	61554137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_61554605_61558040_61558144_61568919_61569019_61571256
73999	chr3	-	288	2	Intergenic	novelGene_3095	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	10	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGATGGTATTCCTAGT	7779	False	NA	NA	False	NA	NA	NA	34753644	34752908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_34753101_34753548
74000	chr7	-	528	4	NIC	ENSMUSG00000036835.8	novel	708	4	NA	NA	9	-3	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	381.68660792156	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGAGTTCTTGGGAT	1416	False	NA	NA	False	NA	NA	NA	30262540	30261292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_30261560_30261748_30261854_30262220_30262313_30262476
74001	chr17	-	1253	6	FSM	ENSMUSG00000062202.15	ENSMUST00000236910.2	1375	6	43	79	-6	-79	multi-exon	FALSE	canonical	3	100	junction_1	4.24264068711928	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGCTCACCGTAACTCA	NA	False	NA	NA	False	NA	NA	NA	30795190	30732528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
74003	chrX	-	780	4	NNC	ENSMUSG00000072955.15	novel	816	4	NA	NA	-7	-24	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	85.7956227839678	550	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATAAACATGGTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	135877625	135855760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135856232_135857397_135857589_135858647_135858678_135877537
74006	chrX	+	959	3	NNC	ENSMUSG00000042903.9	novel	1345	3	NA	NA	-10	-693	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	3	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGAGGCCGGAGTCTGAA	3348	False	NA	NA	False	NA	NA	NA	100298123	100302146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100298598_100298758_100298880_100301782
74007	chr19	-	1079	3	FSM	ENSMUSG00000094936.9	ENSMUST00000178615.8	1018	3	-62	1	-12	-1	multi-exon	FALSE	canonical	3	15	junction_1	5.5	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTATGTGTGCTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	4843941	4835181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4835596_4842425_4842849_4843699
74008	chr8	-	417	2	NNC	ENSMUSG00000031921.18	novel	2666	10	NA	NA	75	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	39	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTCTAGCTGGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	107823071	107796031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_107796360_107822982
74009	chr18	+	856	3	NNC	ENSMUSG00000098702.2	novel	890	2	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.5	4	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACTACACCCGATCTCT	NA	False	NA	NA	False	NA	NA	NA	61859477	61868980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61859976_61860027_61860074_61868668
74012	chr9	+	1093	1	ISM	ENSMUSG00000010054.5	ENSMUST00000010198.5	1665	3	1753	12	1638	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	52	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGACCCTGCACACGAGAG	NA	False	NA	-21	True	NA	NA	NA	107442206	107443299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_107442200_107443300
74013	chr7	-	506	6	NNC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	62	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	414.648091759748	4	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	7304	False	NA	NA	False	NA	NA	NA	126101210	126090884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126090988_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
74014	chr9	-	683	6	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	10	-130	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	304.184417746866	1	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAACTTCCCAGCATTTGT	9060	False	NA	NA	False	NA	NA	NA	58648832	58560293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619333_58619389_58648669
74015	chr2	+	1820	1	FSM	ENSMUSG00000074916.6	ENSMUST00000099546.6	2090	1	259	11	241	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATATACAAAATGAGCAACT	9971	False	NA	NA	False	NA	NA	NA	118757235	118759055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118757200_118759100
74016	chr12	+	1835	1	NIC	ENSMUSG00000097451.12	novel	1602	14	NA	NA	-167	-17944	mono-exon	FALSE	NA	NA	NA	NA	NA	9	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAACGCCAAAGCTCTGG	2042	False	NA	NA	False	NA	NA	NA	109573730	109575565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109573700_109575600
74017	chr12	-	1963	1	Intergenic	novelGene_4404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAAGAAACTGCAAAGCC	4130	False	NA	NA	False	NA	NA	NA	75718591	75716628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_75716600_75718600
74021	chr19	+	678	3	NNC	ENSMUSG00000024959.15	novel	1169	3	NA	NA	149	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	51.5	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAAGCCTGCGCATGTG	9848	False	NA	NA	False	NA	NA	NA	6920395	6929240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6920415_6928013_6928199_6928766
74022	chr4	+	691	1	NIC	ENSMUSG00000023571.5	novel	1315	8	NA	NA	838	4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTCTTGGGTGCACTCTGC	NA	False	NA	NA	False	NA	NA	NA	156050391	156051082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156050400_156051100
74023	chr4	-	1910	9	NNC	ENSMUSG00000040387.17	novel	2287	10	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.33307290649335	1	64	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATACTAGCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24800889	24617280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_24617547_24626896_24626987_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682271_24743857_24743966_24792630_24792798_24800805
74024	chr4	+	383	3	ISM	ENSMUSG00000066058.12	ENSMUST00000084309.12	924	5	1475	912	1380	-912	internal_fragment	FALSE	canonical	0	0	junction_2	0.5	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTGCTGCCAGAGAGTA	4780	False	NA	NA	False	NA	NA	NA	119114085	119116140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_119114248_119114348_119114434_119116004
74025	chr4	+	911	1	NIC	ENSMUSG00000066058.12	novel	924	5	NA	NA	3435	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGACATCATCCTATCT	6835	False	NA	NA	False	NA	NA	NA	119116140	119117051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_119116100_119117100
74026	chr4	+	462	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	8	4	-6	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCGGTGGTTTATCCTT	NA	False	NA	NA	False	NA	NA	NA	152410317	152416933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
74027	chr16	-	1317	12	Antisense	novelGene_ENSMUSG00000003233.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCCCCGCGGCGCGCGGC	8906	False	NA	NA	False	NA	NA	NA	20345808	20335934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_20336105_20341004_20341072_20342152_20342282_20342401_20342511_20342688_20342824_20342999_20343095_20343267_20343339_20344389_20344523_20344650_20344732_20344837_20344902_20345013_20345167_20345698
74028	chr4	+	1601	1	Antisense	novelGene_ENSMUSG00000050796.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGAAGCGCGCCCACACGT	NA	False	NA	NA	False	NA	NA	NA	156075199	156076800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_156075200_156076800
74031	chr6	+	1132	8	NNC	ENSMUSG00000045100.12	novel	2076	10	NA	NA	0	39634	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.5071938588024	2	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCCCAACAACCAGCAGAC	NA	False	NA	NA	False	NA	NA	NA	94477313	94527472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_94477439_94484494_94484652_94487732_94487843_94490785_94491023_94511124_94511230_94512701_94512750_94526079_94526177_94527219
74032	chr5	+	1389	6	ISM	ENSMUSG00000034687.9	ENSMUST00000036019.5	15848	74	397709	2867	141545	-2867	3prime_fragment	FALSE	canonical	0	0	junction_5	0.748331477354788	3	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAAAAGGGAAAAC	1165	False	NA	NA	False	NA	NA	NA	96919522	96929720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_96919591_96920405_96920523_96924479_96924647_96925883_96926090_96927880_96928028_96929036
74034	chr17	-	456	1	Intergenic	novelGene_259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTGTGTATATTTGTAT	5609	False	NA	NA	False	NA	NA	NA	47882619	47882163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_47882200_47882600
74037	chr9	+	720	1	Genic_Genomic	ENSMUSG00000034593.17	novel	NA	NA	NA	NA	-629	-46203	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGAGGGATCGCGGTGGC	1531	False	NA	NA	False	NA	NA	NA	74977667	74978387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_74977700_74978400
74038	chr11	+	401	2	FSM	ENSMUSG00000059278.10	ENSMUST00000124932.2	404	2	0	3	0	-3	multi-exon	FALSE	canonical	3	1280	junction_1	0	1147	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTGTGTCTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	69286943	69287503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69287187_69287345
74039	chr1	-	1437	1	ISM	ENSMUSG00000038702.7	ENSMUST00000186365.2	3063	3	4571	59	4571	-55	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTCTAACATTTACCTT	NA	False	NA	NA	False	NA	NA	NA	111787927	111786490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_111786500_111787900
74040	chr11	-	1104	1	Antisense	novelGene_ENSMUSG00000035992.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAGCATAAGCTGTGGAG	NA	False	NA	NA	False	NA	NA	NA	54372564	54371460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_54371500_54372600
74041	chr17	-	475	4	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	21	-15137	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	334.487003567486	7	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAAAAGGCACTGTTTA	9442	False	NA	NA	False	NA	NA	NA	6734400	6723937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6724073_6724405_6724528_6725999_6726088_6734270
74044	chr9	-	588	3	NNC	ENSMUSG00000074284.7	novel	957	2	NA	NA	0	-468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2.5	8	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTAAGCCGCTTCCCA	NA	False	NA	NA	False	NA	NA	NA	56979250	56964954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_56965086_56965225_56965303_56978870
74046	chr1	+	1613	5	ISM	ENSMUSG00000037995.16	ENSMUST00000111235.8	4205	21	13950	5	1510	-4	3prime_fragment	FALSE	canonical	2	10	junction_2	1.92028643696715	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTCTCTGTCACCTCTCT	6258	False	NA	NA	False	NA	NA	NA	172323830	172326440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_172323895_172324164_172324208_172324452_172325314_172325563_172325692_172325923
74048	chr3	+	1309	1	Intergenic	novelGene_3163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATCGAGGAAAGCAGCAT	NA	False	NA	NA	False	NA	NA	NA	97192225	97193534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_97192200_97193500
74049	chr13	+	757	6	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74249	-23954	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_5	8.05977667184395	9	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTATAAAGGACTCACTAAA	NA	False	NA	NA	False	NA	NA	NA	21120553	21184468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067
74050	chr5	-	826	4	ISM	ENSMUSG00000025537.13	ENSMUST00000154932.3	779	5	-8	536	-8	212	5prime_fragment	FALSE	canonical	3	15	junction_2	3.68178700572909	17	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGAGATGGCTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	129902954	129895606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_129895867_129898301_129898368_129902056_129902112_129902509
74051	chr2	-	888	6	NIC	ENSMUSG00000055897.14	novel	755	6	NA	NA	0	5	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.17687164221791	103	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGTCTCTTTCTCCTTG	NA	False	NA	NA	False	NA	NA	NA	173501332	173437893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_173438321_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
74054	chr5	+	1502	1	NIC	ENSMUSG00000079109.12	novel	5482	15	NA	NA	20	-1882	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAAAAACTAATGTTGAA	NA	False	NA	NA	False	NA	NA	NA	143846894	143848396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_143846900_143848400
74055	chr11	+	1421	1	ISM	ENSMUSG00000040711.9	ENSMUST00000038753.6	7413	13	78786	147	78766	-147	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTCAAGCTTCGTTGT	NA	False	NA	NA	False	NA	NA	NA	32376605	32378026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_32376600_32378000
74056	chr11	+	1441	5	ISM	ENSMUSG00000042436.13	ENSMUST00000126308.2	1770	6	212	219	212	-219	3prime_fragment	FALSE	canonical	0	0	junction_1	1.29903810567666	12	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAACTTCAGGATCTGA	NA	False	NA	NA	False	NA	NA	NA	61376553	61379507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_61376632_61376863_61377019_61377735_61377833_61377904_61378088_61378579
74057	chr7	+	513	2	NNC	ENSMUSG00000109284.2	novel	510	2	NA	NA	2854	-12	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	32	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAAAAAAAACCTCTCT	NA	False	NA	NA	False	NA	NA	NA	118194592	118196048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118194705_118195647
74059	chr11	-	721	1	Intergenic	novelGene_2272	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGAGACGGTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	52145777	52145056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_52145100_52145800
74060	chr11	-	649	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107080.2	585	3	27	-91	27	-2	multi-exon	FALSE	canonical	2	5	junction_2	5.5	55	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTTGCTTCTTTTTTT	8607	False	NA	NA	False	NA	NA	NA	102469918	102467225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102467624_102469575_102469722_102469813
74063	chr7	-	547	2	NNC	ENSMUSG00000025492.7	novel	678	2	NA	NA	71	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	18	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTATGACTGCTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	140590612	140589501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140589761_140590324
74064	chr15	+	753	5	Antisense	novelGene_ENSMUSG00000019146.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_3	2.38484800354236	21	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCCCCACCACCACCCA	3871	False	NA	NA	False	NA	NA	NA	77885859	77936404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_77885969_77896575_77896681_77928329_77928410_77931221_77931384_77936107
74065	chr15	-	879	2	Antisense	novelGene_ENSMUSG00000001655.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	51	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGAATCTGTATTATTGA	NA	False	NA	NA	False	NA	NA	NA	102840070	102835264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_102835785_102839711
74066	chr11	-	1826	14	FSM	ENSMUSG00000018924.7	ENSMUST00000019068.7	2409	14	41	542	41	-89	multi-exon	FALSE	canonical	0	0	junction_1	0.421325044234743	3	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCAAACCCTGAGGCCA	NA	False	NA	NA	False	NA	NA	NA	70242816	70235519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70235549_70235645_70235814_70235921_70236023_70236355_70236478_70236642_70236813_70236905_70236993_70237912_70238123_70238914_70239059_70240369_70240531_70240729_70240834_70240954_70241078_70241150_70241233_70241539_70241745_70242696
74067	chr14	+	1236	3	ISM	ENSMUSG00000022176.12	ENSMUST00000164766.8	1884	5	1947	9	576	-9	3prime_fragment	FALSE	canonical	1	2	junction_2	3	4	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTATTGCACTAAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	54715503	54717879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_54715559_54716410_54716619_54716906
74068	chr1	+	815	4	NNC	ENSMUSG00000038034.16	novel	2278	7	NA	NA	33	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	370.411482903361	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAAAATCGAGGCCTGTT	3776	False	NA	NA	False	NA	NA	NA	172139966	172147396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_172140024_172146153_172146535_172146859_172146991_172147150
74069	chr1	-	635	1	Intergenic	novelGene_441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGTGAGTATTATTATT	NA	False	NA	NA	False	NA	NA	NA	131801952	131801317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_131801300_131802000
74070	chr7	+	495	1	Genic_Genomic	ENSMUSG00000109118.2	novel	NA	NA	NA	NA	179	210	mono-exon	FALSE	NA	NA	NA	NA	NA	40	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCTGCCTTCCCCCTAG	NA	False	NA	NA	False	NA	NA	NA	46658471	46658966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_46658500_46659000
74071	chr7	-	818	7	ISM	ENSMUSG00000036845.13	ENSMUST00000108164.8	1312	9	256	404	57	11	5prime_fragment	FALSE	canonical	3	52	junction_6	83.3034946579207	1	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGTATCCAAGGCTGGCC	4949	False	NA	NA	False	NA	NA	NA	30259007	30255273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257510_30258866
74072	chr7	-	875	5	FSM	ENSMUSG00000030844.12	ENSMUST00000033133.12	880	5	1	4	1	-4	multi-exon	FALSE	canonical	3	8	junction_4	4.32290411644765	121	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCCTTTAGTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	128019896	127975348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127975767_127990687_127990832_128004893_128004981_128006082_128006202_128019789
74073	chr14	+	413	4	NNC	ENSMUSG00000022111.10	novel	1270	4	NA	NA	0	-74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2212.30141607231	2	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTCAAAATTTTTAATAT	139	False	NA	NA	False	NA	NA	NA	101891451	101933486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_101891556_101903196_101903326_101903947_101904039_101933397
74074	SIRV6	+	515	4	NNC	SIRV6A	novel	531	4	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8472.83212522367	1	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCGCTTGAAAAAGTAATAGT	NA	False	NA	NA	False	NA	NA	NA	2288	10786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_2607_2737_2815_3106_3165_10724
74075	chr8	+	1674	1	Genic_Genomic	ENSMUSG00000086390.8	novel	NA	NA	NA	NA	-33	180	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTCCAGAACTTCAAAGT	NA	False	NA	NA	False	NA	NA	NA	106863663	106865337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_106863700_106865300
74077	chr8	-	908	3	FSM	ENSMUSG00000110231.2	ENSMUST00000209210.2	936	3	30	-2	30	2	multi-exon	FALSE	canonical	3	13	junction_1	4	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAGAACTGACTCTTCT	NA	False	NA	NA	False	NA	NA	NA	45618226	45613528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_45614092_45614492_45614559_45617947
74079	chr1	-	1156	1	Intergenic	novelGene_395	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTCCCCCTCTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	84775441	84774285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_84774300_84775400
74081	chr11	-	467	3	ISM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	5006	1706	4915	-797	internal_fragment	FALSE	canonical	3	3219	junction_2	50	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAATTGAGTGCCACTCTG	NA	False	NA	NA	False	NA	NA	NA	6389437	6378934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_6379226_6383723_6383838_6389375
74082	chr12	-	615	2	Antisense	novelGene_ENSMUSG00000051721.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	365	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGCGTCACGTTAGCGG	8406	False	NA	NA	False	NA	NA	NA	4899340	4893314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_4893450_4898860
74083	chrX	-	591	6	NNC	ENSMUSG00000096457.8	novel	639	8	NA	NA	7938	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	144	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTAACATTTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	28378749	28365434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_28365599_28365917_28366017_28368465_28368548_28376745_28376810_28377118_28377245_28378693
74085	chr2	-	1274	3	NNC	ENSMUSG00000074649.7	novel	1615	2	NA	NA	223	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	54	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGCTTTGCAAAGTATAAAA	7322	False	NA	NA	False	NA	NA	NA	155661123	155659669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155660754_155660851_155661004_155661085
74087	chr19	+	682	1	Intergenic	novelGene_1203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCATGATTTTGAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	6697400	6698082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_6697400_6698100
74088	chr12	+	811	5	FSM	ENSMUSG00000040856.18	ENSMUST00000109844.11	1703	5	67	825	-13	113	multi-exon	FALSE	canonical	3	24	junction_4	4.02336923485777	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCAGCACACCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	109419447	109425801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532
74089	chr13	+	1055	1	ISM	ENSMUSG00000114442.2	ENSMUST00000224844.2	4257	2	612	3118	593	-3118	mono-exon	FALSE	NA	NA	NA	NA	NA	8	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGCAAGGTGAGCAGACT	NA	False	NA	NA	False	NA	NA	NA	67427252	67428307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_67427300_67428300
74090	chr5	+	1762	1	ISM	ENSMUSG00000036377.20	ENSMUST00000120639.9	6826	9	31029	156	2440	59	mono-exon	FALSE	NA	NA	NA	NA	NA	6	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAATATTTTTACCAACAAT	3436	False	NA	NA	False	NA	NA	NA	77019474	77021236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_77019500_77021200
74092	chr11	-	655	2	FSM	ENSMUSG00000086474.3	ENSMUST00000150312.2	696	2	21	20	21	-20	multi-exon	FALSE	canonical	0	0	junction_1	0	19	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAACCTTTTCTACCCC	1435	False	NA	NA	False	NA	NA	NA	79673692	79672824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_79673383_79673595
74093	chr11	+	934	3	NNC	ENSMUSG00000086391.2	novel	1075	4	NA	NA	14134	-3	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	3	27	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCTTGTAAATATTTTA	2853	False	NA	NA	False	NA	NA	NA	11832256	11835318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_11832389_11832956_11833080_11834639
74094	chr13	-	848	2	NNC	ENSMUSG00000016477.19	novel	5097	7	NA	NA	-31	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCAGACTTGTGGATGGA	NA	False	NA	NA	False	NA	NA	NA	30170077	30090563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_30090812_30169477
74095	chr7	+	325	1	Genic_Genomic	ENSMUSG00000090075.2	novel	NA	NA	NA	NA	6710	156	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTTGCCTTAATTTTTC	NA	False	NA	NA	False	NA	NA	NA	19661363	19661688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_19661400_19661700
74097	chr14	+	429	1	Antisense	novelGene_ENSMUSG00000061517.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTTTCCCCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	118470677	118471106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_118470700_118471100
74098	chr11	-	420	1	Antisense	novelGene_ENSMUSG00000003119.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTTTCAGGGCATTTGA	8382	False	NA	NA	False	NA	NA	NA	98141665	98141245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_98141200_98141700
74100	chr11	+	534	2	ISM	ENSMUSG00000097887.3	ENSMUST00000180443.3	1235	3	11	4247	11	-4247	5prime_fragment	FALSE	canonical	2	3	junction_1	0	12	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAAGCTAGTCTTCCATA	8249	False	NA	NA	False	NA	NA	NA	50127849	50175419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_50128207_50175242
74101	chr9	+	725	1	ISM	ENSMUSG00000032013.7	ENSMUST00000034511.7	2735	9	24543	0	6396	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACGACTCTAGTCCTGAGT	NA	False	NA	NA	False	NA	NA	NA	43246687	43247412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_43246700_43247400
74102	chr16	+	1066	5	ISM	ENSMUSG00000034206.16	ENSMUST00000183112.8	7386	26	-6	77415	-6	-13	5prime_fragment	FALSE	canonical	3	18	junction_3	8.6421930087218	38	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTCACTTTATTTATT	3742	False	NA	NA	False	NA	NA	NA	36832141	36837939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560
74103	chr9	-	1447	1	ISM	ENSMUSG00000032226.6	ENSMUST00000034751.6	4301	3	3046	2100	3046	-2100	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCCCCCCTCTTTTATA	NA	False	NA	NA	False	NA	NA	NA	69942324	69940877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_69940900_69942300
74104	chr7	-	1551	1	Intergenic	novelGene_2965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATAGTGAAGAAACACACAC	2365	False	NA	NA	False	NA	NA	NA	45868610	45867059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_45867100_45868600
74105	chr3	+	1016	5	NNC	ENSMUSG00000036873.14	novel	514	4	NA	NA	38	32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	46.3815696155272	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCTTGTTATTACTGAAT	NA	False	NA	NA	False	NA	NA	NA	145643834	145650029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_145643911_145643982_145644084_145644297_145644425_145644652_145644852_145649516
74106	chr4	+	926	6	ISM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	12327	20	274	-10	3prime_fragment	FALSE	canonical	3	363	junction_1	35.8307130824939	1	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCCATAAATATGGCTGAA	5300	False	NA	NA	False	NA	NA	NA	123189030	123192605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
74107	chr13	-	1428	10	NNC	ENSMUSG00000035936.7	novel	5647	10	NA	NA	-1984	-3943	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	16.3026923475166	26	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGGGACATTCCATCCATT	NA	False	NA	NA	False	NA	NA	NA	25123628	25095504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_25095750_25096230_25096290_25097726_25097897_25099744_25099904_25102483_25102628_25103661_25103806_25107949_25108067_25109960_25110132_25111523_25111608_25123493
74109	chr1	+	419	8	ISM	ENSMUSG00000053332.14	ENSMUST00000162289.8	904	10	3	853	0	120	5prime_fragment	FALSE	canonical	3	3085	junction_7	1201.54334427155	170	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTGTAATGTTTTAAAGAG	NA	False	NA	NA	False	NA	NA	NA	160862735	160865250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074
74110	chr18	+	1526	1	Intergenic	novelGene_4557	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGAGATGCGAGTAATCCA	NA	False	NA	NA	False	NA	NA	NA	65720941	65722467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_65720900_65722500
74111	chr12	-	557	1	FSM	ENSMUSG00000043398.6	ENSMUST00000050649.6	3150	1	2598	-5	2598	5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTTTGTTTTGTTTTTT	960	False	NA	NA	False	NA	NA	NA	72115301	72114744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_72114700_72115300
74112	chr2	-	1031	2	Genic_Genomic	ENSMUSG00000089762.4	novel	2683	1	NA	NA	172	-1086	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGACTTTATTTTTGCA	NA	False	NA	NA	False	NA	NA	NA	30364059	30362634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_30363392_30363785
74113	chr7	-	779	1	FSM	ENSMUSG00000098022.8	ENSMUST00000183025.2	3276	1	2062	435	2062	-435	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATCAACAATGATTCCTA	NA	False	NA	NA	False	NA	NA	NA	29755127	29754348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29754300_29755100
74114	chr7	-	1659	2	Intergenic	novelGene_2898	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	4	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCTTGCAGTTTGCATC	NA	False	NA	NA	False	NA	NA	NA	25554614	25552868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_25554407_25554493
74115	chr11	+	537	3	FSM	ENSMUSG00000093483.2	ENSMUST00000177150.2	383	3	-2	-152	-2	151	multi-exon	FALSE	non_canonical	0	0	junction_1	190.5	1366	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACCAGCGATTATGCGCT	5846	False	NA	NA	False	NA	NA	NA	83182522	83185609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83182660_83182792_83182924_83185340
74118	chr7	+	712	3	NNC	ENSMUSG00000030725.5	novel	1663	2	NA	NA	342	247	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	41	17	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAATAAAATAGTTTT	NA	False	NA	NA	False	NA	NA	NA	99808907	99810108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_99808955_99809380_99809667_99809729
74119	chr2	+	2182	2	Intergenic	novelGene_2658	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	73	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCAAACAAGCCCCAGGG	NA	False	NA	NA	False	NA	NA	NA	75345921	75348156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_75346675_75346727
74120	chr15	+	549	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	-36	-30	-36	30	mono-exon	FALSE	NA	NA	NA	NA	NA	3	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	68181631	68182180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_68181600_68182200
74121	chr17	+	1544	1	NIC	ENSMUSG00000023939.8	novel	645	3	NA	NA	50	-10228	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCGGCATATATCCTATAA	NA	False	NA	NA	False	NA	NA	NA	45997332	45998876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_45997300_45998900
74122	chr15	+	1120	3	FSM	ENSMUSG00000099034.8	ENSMUST00000183928.8	1459	3	338	1	-8	-1	multi-exon	FALSE	canonical	2	3	junction_1	0.5	10	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGATGGAGTCTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	75514315	75519285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_75514361_75517197_75517294_75518306
74127	chr11	+	1382	2	ISM	ENSMUSG00000034209.5	ENSMUST00000037218.2	1110	3	-42	10	-42	-10	intron_retention	FALSE	canonical	3	10	junction_1	0	26	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATGCACAATTTAAGGG	NA	False	NA	NA	False	NA	NA	NA	5008085	5010375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_5008525_5009432
74128	chr9	-	1164	4	FSM	ENSMUSG00000036867.8	ENSMUST00000041029.6	2971	4	1807	0	1780	0	multi-exon	FALSE	canonical	3	34	junction_3	8.65383665716478	45	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTTTCTTTCTTACAAA	NA	False	NA	NA	False	NA	NA	NA	63927534	63860357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_63861339_63914812_63914891_63919496_63919554_63927486
74129	chr15	-	1440	5	NNC	ENSMUSG00000099083.8	novel	2066	7	NA	NA	31208	-1375	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.7527470868904	1	65	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGTCGCCATGACCACAG	8670	False	NA	NA	False	NA	NA	NA	102502149	102461251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102462357_102465894_102466014_102471748_102471846_102500127_102500204_102502106
74130	chr5	+	1535	5	ISM	ENSMUSG00000034118.16	ENSMUST00000040721.9	2050	6	22427	16	8208	1	3prime_fragment	FALSE	canonical	3	139	junction_1	12.1346610995116	64	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTAAATGTGAAGCACTCA	NA	False	NA	NA	False	NA	NA	NA	130130637	130164554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_130131377_130143308_130143508_130158348_130158400_130163299_130163340_130164048
74131	chr7	+	1083	1	ISM	ENSMUSG00000074121.4	ENSMUST00000058879.8	1963	3	1843	559	1634	-559	mono-exon	FALSE	NA	NA	NA	NA	NA	13	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAGAATCTATCTTAATAA	2480	False	NA	NA	False	NA	NA	NA	45064961	45066044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45065000_45066000
74132	chr5	+	1166	7	NIC	ENSMUSG00000056602.14	novel	592	4	NA	NA	-27	425	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	2.26691175145591	9	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTCTCTCTTCTCAAA	1248	False	NA	NA	False	NA	NA	NA	150119903	150269814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817_150263958_150269017_150269109_150269315_150269396_150269510
74133	chr13	+	773	5	NIC	ENSMUSG00000086363.8	novel	682	4	NA	NA	3	1	combination_of_known_junctions	TRUE	canonical	2	3	junction_1	0.82915619758885	43	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTATCGAGTTATAGTTT	NA	False	NA	NA	False	NA	NA	NA	29200278	29212781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_29200375_29200692_29200863_29207158_29207196_29207613_29207707_29212404
74134	chr6	+	879	3	FSM	ENSMUSG00000034083.17	ENSMUST00000138868.8	3980	3	31	3070	9	1406	multi-exon	FALSE	canonical	3	200	junction_1	5	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAAATGAAATAGGGTCC	NA	False	NA	NA	False	NA	NA	NA	91855064	91858898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_91855168_91857237_91857343_91858227
74137	chr7	-	1250	8	Intergenic	novelGene_2994	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCTCCCGCGGGGAGCG	NA	False	NA	NA	False	NA	NA	NA	96344054	95859464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_95859616_96004561_96004617_96085964_96086064_96145448_96145548_96199218_96199504_96202681_96202954_96293204_96293415_96343975
74139	chr11	-	1718	10	NNC	ENSMUSG00000017132.18	novel	545	6	NA	NA	-9	3859	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	11.5256022043466	7	10	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAGTTTAAAAGTGTCC	8623	False	NA	NA	False	NA	NA	NA	118139395	118071938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_118072737_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
74140	chr1	-	1007	1	Antisense	novelGene_ENSMUSG00000026584.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTGAGAAACTAGACAGAA	NA	False	NA	NA	False	NA	NA	NA	163767325	163766318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_163766300_163767300
74142	chr15	+	581	4	NNC	ENSMUSG00000068220.7	novel	800	4	NA	NA	-2809	5	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	938.05555391044	83	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCCCTTTCATGGGAGA	NA	False	NA	NA	False	NA	NA	NA	78808115	78814396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_78808246_78812169_78812250_78813832_78814005_78814197
74144	chr12	-	1128	7	FSM	ENSMUSG00000050545.11	ENSMUST00000053458.7	2851	7	10	1713	10	-22	multi-exon	FALSE	canonical	3	18	junction_3	2.69258240356725	66	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTATTGTGATTCATTG	NA	False	NA	NA	False	NA	NA	NA	4819222	4797928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
74145	chr19	-	805	5	ISM	ENSMUSG00000050121.10	ENSMUST00000087176.8	1839	6	4882	954	-4108	-954	3prime_fragment	FALSE	canonical	1	1	junction_1	0	5	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGGCTTTTTTGGGGGGT	NA	False	NA	NA	False	NA	NA	NA	41060670	41051865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_41052419_41054937_41054995_41056095_41056219_41058356_41058393_41060634
74147	chr5	-	684	3	NNC	ENSMUSG00000035266.17	novel	442	3	NA	NA	617	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	45.5	60	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGCGCTCTGGGTGATTA	2484	False	NA	NA	False	NA	NA	NA	100914062	100910016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100910503_100912806_100912942_100913999
74148	chr8	+	1132	6	FSM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	18	15	-2	-15	multi-exon	FALSE	canonical	3	19	junction_5	35.5111250173801	77	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCCAGTTCAGTAACTA	NA	False	NA	NA	False	NA	NA	NA	125448895	125460847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460545
74149	chr7	+	829	6	NNC	ENSMUSG00000053367.16	novel	684	11	NA	NA	-191	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	30.4854063446758	3	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGATTTTTGATTGATT	3021	False	NA	NA	False	NA	NA	NA	6263343	6284842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6263544_6266905_6266967_6277340_6277373_6280418_6280541_6282412_6282451_6284466
74150	chr7	+	533	4	FSM	ENSMUSG00000089847.9	ENSMUST00000210350.2	529	4	-7	3	-7	3	multi-exon	FALSE	canonical	3	28	junction_3	163.903087897154	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCTTTCTTGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	105289750	105291053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_105289830_105289968_105290065_105290234_105290368_105290828
74151	chr2	+	965	4	FSM	ENSMUSG00000037740.9	ENSMUST00000145614.2	4278	4	12	3301	12	0	multi-exon	FALSE	canonical	3	506	junction_2	32.273139846559	219	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	397	False	NA	NA	False	NA	NA	NA	130405673	130407314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130405911_130406000_130406148_130406227_130406352_130406857
74153	chr17	+	995	3	NNC	ENSMUSG00000024409.9	novel	843	2	NA	NA	-422	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4	19	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACGTTTTCTTCTGAAT	1790	False	NA	NA	False	NA	NA	NA	35843675	35845525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35843825_35844075_35844192_35844795
74154	chr9	+	1186	1	Antisense	novelGene_ENSMUSG00000032330.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGGGCTCGTTCCGGGAA	NA	False	NA	NA	False	NA	NA	NA	79665857	79667043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_79665900_79667000
74155	chr7	+	554	4	FSM	ENSMUSG00000037166.6	ENSMUST00000048187.6	950	4	-14	410	-10	-410	multi-exon	FALSE	canonical	3	93	junction_2	2.05480466765633	59	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCCGGATTTTCC	3993	False	NA	NA	False	NA	NA	NA	28988722	28992816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28988961_28990934_28991016_28991475_28991509_28992614
74156	chr11	+	503	4	ISM	ENSMUSG00000020827.19	ENSMUST00000136663.8	4367	28	4106	6693	-606	17	internal_fragment	FALSE	canonical	3	75	junction_1	5.43650214343336	2	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCACCTGTACCCCGA	NA	False	NA	NA	False	NA	NA	NA	70496920	70498616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_70496991_70497745_70497971_70498167_70498342_70498582
74157	chr14	+	1334	2	Genic_Genomic	ENSMUSG00002076244.1_ENSMUSG00002075420.1	novel	137	1	NA	NA	-1088	4	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGGCGCCGAAAGCGC	NA	False	NA	NA	False	NA	NA	NA	61879731	61886227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_61880905_61886066
74158	chr2	+	1451	1	Intergenic	novelGene_2654	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATGTATAATTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	73128062	73129513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_73128100_73129500
74159	chr7	+	1034	7	Fusion	ENSMUSG00000097320.9_ENSMUSG00000046056.16	novel	1276	6	NA	NA	47	-34	multi-exon	FALSE	canonical	1	1	junction_4	6.02771377334171	49	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCTTTGTGAATAAAC	573	False	NA	NA	False	NA	NA	NA	30429050	30455517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_30429280_30431838_30432187_30434128_30434194_30435240_30435388_30454233_30454306_30454426_30454472_30455389
74160	chr1	-	1645	4	FSM	ENSMUSG00000026525.10	ENSMUST00000027809.8	1913	4	235	33	235	-33	multi-exon	FALSE	canonical	3	10	junction_1	0	6	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCAATCCCTACTTTTA	NA	False	NA	NA	False	NA	NA	NA	175520107	175490019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_175490721_175491092_175491345_175492875_175493196_175519735
74161	chr19	+	793	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5900	11	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.2374789822141	137	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGTATATTATCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	29681233	29685837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_29681401_29681868_29682117_29684207_29684322_29685573
74162	chr17	+	523	4	NNC	ENSMUSG00000023939.8	novel	531	4	NA	NA	18	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	465.998569382639	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATGTATGTTTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	45997300	46009399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45997354_46006407_46006499_46008973_46009203_46009249
74163	chr1	-	745	1	Intergenic	novelGene_430	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACGGCCAATCAGCCAGG	NA	False	NA	NA	False	NA	NA	NA	118573863	118573118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118573100_118573900
74164	chr1	-	1040	1	Intergenic	novelGene_431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAAAGCCAAACCTC	NA	False	NA	NA	False	NA	NA	NA	118574810	118573770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118573800_118574800
74165	chr11	+	808	1	ISM	ENSMUSG00000020821.18	ENSMUST00000102554.8	6684	23	28100	2509	27998	-932	mono-exon	FALSE	NA	NA	NA	NA	NA	43	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGCGGTTAAGGTTGTGC	3579	False	NA	NA	False	NA	NA	NA	70619473	70620281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_70619500_70620300
74166	chr11	-	990	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	67	5	67	0	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	170	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	NA	False	NA	NA	NA	100156737	100153712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
74167	chr4	+	990	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	-8	21	6	-17	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	170	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTATCAATTAGACTATA	NA	False	NA	NA	False	NA	NA	NA	148533073	148539409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
74168	chr5	+	919	4	NNC	ENSMUSG00000107385.4	novel	2764	5	NA	NA	45	-2465	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7.84573486395988	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGCTTGAGTTAAATGTT	8077	False	NA	NA	False	NA	NA	NA	67621290	67625709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_67621362_67623669_67623772_67624135_67624391_67625218
74169	chr7	-	753	2	ISM	ENSMUSG00000037552.18	ENSMUST00000152281.2	858	5	-422	1055	-8	-720	5prime_fragment	FALSE	canonical	3	15	junction_1	0	4	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGAGTGACACTCCAACA	NA	False	NA	NA	False	NA	NA	NA	28071927	28070560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28070671_28071284
74170	chr9	+	1141	1	NIC	ENSMUSG00000032606.8	novel	2133	6	NA	NA	4	-1924	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGATGCTGGTGTGCATCG	NA	False	NA	NA	False	NA	NA	NA	108167646	108168787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108167600_108168800
74172	chr9	-	714	3	ISM	ENSMUSG00000032093.8	ENSMUST00000214582.2	517	4	1255	-461	1255	-335	3prime_fragment	FALSE	canonical	3	11	junction_2	2	8	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCCCATCCTCCGACTG	8281	False	NA	NA	False	NA	NA	NA	44912430	44910372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_44910886_44911732_44911780_44912276
74174	chr8	+	2225	1	Intergenic	novelGene_1729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	88	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACAGGCCCACTACCTC	NA	False	NA	NA	False	NA	NA	NA	109678445	109680670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_109678400_109680700
74175	chr7	+	698	2	NNC	ENSMUSG00000074405.9	novel	7503	3	NA	NA	-73	-109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCTGGGGTCTGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	5032249	5035676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_5032919_5035647
74176	chr17	-	733	3	NNC	ENSMUSG00000117916.2	novel	2149	2	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	34.5	40	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACATACTCCGACTTGGGT	6251	False	NA	NA	False	NA	NA	NA	27461631	27454049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27454490_27455902_27456112_27461547
74177	chr7	+	1250	5	ISM	ENSMUSG00000030731.14	ENSMUST00000120262.2	2096	10	10271	-257	10271	-9	3prime_fragment	FALSE	canonical	3	17	junction_1	1.4790199457749	28	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTCTCATCCCACCTGT	NA	False	NA	NA	False	NA	NA	NA	44044562	44049444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44044955_44045062_44045235_44045326_44045460_44048509_44048578_44048959
74178	chr2	+	964	1	Antisense	novelGene_ENSMUSG00000026924.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTCAGTAGCCTAAGGAT	4782	False	NA	NA	False	NA	NA	NA	26299515	26300479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_26299500_26300500
74182	chr6	+	618	1	ISM	ENSMUSG00000032827.16	ENSMUST00000035813.9	9547	16	258048	3676	47909	1764	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTGTGACTTTATTAACA	NA	False	NA	NA	False	NA	NA	NA	5161367	5161985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_5161400_5162000
74183	chr7	-	1108	2	FSM	ENSMUSG00000035686.9	ENSMUST00000043077.8	1277	2	162	7	-49	-7	multi-exon	FALSE	canonical	3	27	junction_1	0	145	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAAACATGGCATGTTGG	NA	False	NA	NA	False	NA	NA	NA	97066775	97062151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_97062723_97066238
74184	chr17	+	474	2	ISM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	6833	5	6831	-5	3prime_fragment	FALSE	canonical	3	423	junction_1	0	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGACCAGCCTGTTGAGT	NA	False	NA	NA	False	NA	NA	NA	48044599	48045402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_48044781_48045109
74185	chr5	-	960	1	Intergenic	novelGene_705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAGCTGGGACTAAACTA	8365	False	NA	NA	False	NA	NA	NA	34517797	34516837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_34516800_34517800
74187	chr17	-	272	2	ISM	ENSMUSG00000042625.17	ENSMUST00000146070.2	439	3	0	4165	0	-4165	5prime_fragment	FALSE	canonical	3	135	junction_1	0	2	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATCAGCTGGGGAGCT	NA	False	NA	NA	False	NA	NA	NA	56891511	56890037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_56890072_56891273
74188	chr1	+	1261	2	FSM	ENSMUSG00000047067.8	ENSMUST00000060913.8	1314	2	47	6	47	-6	multi-exon	FALSE	canonical	3	9	junction_1	0	16	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACCCCCGAGTTGCTC	2902	False	NA	NA	False	NA	NA	NA	92834749	92836151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_92835146_92835286
74189	chr6	-	749	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	13	5	13	-5	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	2642	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTAGATGTAGAATAGGTA	NA	False	NA	NA	False	NA	NA	NA	131270194	131261355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
74190	chr17	+	701	5	FSM	ENSMUSG00000073435.11	ENSMUST00000024978.7	715	5	-6	20	-6	18	multi-exon	FALSE	canonical	3	182	junction_1	9.82344135219425	1118	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCGCTGGTGAAGTTTC	NA	False	NA	NA	False	NA	NA	NA	25115467	25116476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25115534_25115601_25115733_25115825_25115928_25116001_25116115_25116187
74191	chr5	+	691	2	ISM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	102	0	96	0	3prime_fragment	FALSE	canonical	3	119	junction_1	0	589	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	74253839	74254998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_74254081_74254548
74193	chr12	+	864	4	NNC	ENSMUSG00000020646.18	novel	6792	12	NA	NA	-10	-28030	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	79.8721200141548	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTATTATATAATATATG	NA	False	NA	NA	False	NA	NA	NA	24881597	24948834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24881774_24928189_24928336_24932715_24932794_24948370
74194	chr1	+	889	3	NNC	ENSMUSG00000026639.19	novel	4867	27	NA	NA	1276	525	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGCTAGTCATCCCAATG	NA	False	NA	NA	False	NA	NA	NA	192956921	192963414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_192957022_192962530_192962584_192962678
74195	chr7	+	663	2	Intergenic	novelGene_2892	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	49	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCGTTGCCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	23968228	23969168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_23968442_23968718
74196	chr2	+	652	6	Intergenic	novelGene_2605	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCCCACGTCAGGCTGCG	5786	False	NA	NA	False	NA	NA	NA	32168827	32178015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_32169144_32170720_32170815_32171696_32171753_32171803_32171823_32177608_32177657_32177896
74197	chr19	+	726	2	FSM	ENSMUSG00000110156.3	ENSMUST00000209642.2	647	2	156	-235	-9	-1	multi-exon	FALSE	canonical	3	13	junction_1	0	49	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCTCACACTACACAGCG	9380	False	NA	NA	False	NA	NA	NA	5963005	5964856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5963101_5964225
74198	ERCC-00111	+	978	1	FSM	ERCC-00111A	DQ883685	978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00111_+_0_1000
74199	chr8	-	1165	1	Intergenic	novelGene_1619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTACACTGTGGCTGTC	NA	False	NA	NA	False	NA	NA	NA	37053596	37052431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_37052400_37053600
74202	chr11	-	1747	2	Intergenic	novelGene_2373	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCCACAAACTCGTAACAG	NA	False	NA	NA	False	NA	NA	NA	59296926	59293414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_59294314_59296078
74203	chr6	+	1504	10	Antisense	novelGene_ENSMUSG00000004631.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGGTAAACGCTTC	NA	False	NA	NA	False	NA	NA	NA	4674392	4733596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_4674635_4678068_4678110_4689577_4689769_4691411_4691644_4694024_4694185_4707073_4707276_4711309_4711381_4717920_4718083_4719376_4719497_4733513
74204	chr10	-	761	1	Intergenic	novelGene_3448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATGTATGCCTCCATGC	NA	False	NA	NA	False	NA	NA	NA	61581130	61580369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_61580400_61581100
74205	chr6	+	699	1	ISM	ENSMUSG00000048636.8	ENSMUST00000057977.4	2239	5	26269	20	15115	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAACATTTTTTTTAAA	3234	False	NA	NA	False	NA	NA	NA	92819727	92820426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_92819700_92820400
74206	chrX	+	829	1	Intergenic	novelGene_3878	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCACCAAGTCCCGCTT	NA	False	NA	NA	False	NA	NA	NA	7939445	7940274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_7939400_7940300
74207	chr2	-	627	2	Intergenic	novelGene_2659	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	107	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTGATCTTTATTTTGT	3960	False	NA	NA	False	NA	NA	NA	75463858	75457246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_75457815_75463799
74208	chr15	-	878	3	NNC	ENSMUSG00000033228.9	novel	796	8	NA	NA	-5915	-1807	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	146	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGAATTATTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	96322488	96320487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96321226_96321397_96321500_96322450
74210	chr13	+	1116	2	Intergenic	novelGene_1318	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	9	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCTGGATTCGTGAATG	NA	False	NA	NA	False	NA	NA	NA	15572143	15602234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_15572269_15601243
74211	chr8	-	1581	13	ISM	ENSMUSG00000014778.11	ENSMUST00000014922.5	3928	22	18	4390	18	-2613	5prime_fragment	FALSE	canonical	0	0	junction_1	1.06718737290547	3	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGCCCTGTTTCCCGAA	NA	False	NA	NA	False	NA	NA	NA	106074567	106060184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_106060237_106061318_106061435_106063013_106063194_106063270_106063429_106063518_106063663_106063754_106063850_106063949_106064062_106064306_106064402_106064483_106064590_106064661_106064730_106065033_106065099_106065485_106065593_106074284
74212	chr6	+	452	5	NNC	ENSMUSG00000029911.15	novel	4398	7	NA	NA	-31	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1235.34699072771	32	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTATATTTTTCTTGAT	NA	False	NA	NA	False	NA	NA	NA	40448317	40457932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453407_40457786
74213	chr11	+	964	1	Intergenic	novelGene_2213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGGCCCTAATTTTGTA	NA	False	NA	NA	False	NA	NA	NA	6576165	6577129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_6576200_6577100
74215	chr7	-	945	5	ISM	ENSMUSG00000030406.8	ENSMUST00000094790.5	2856	14	6129	871	5096	-868	3prime_fragment	FALSE	canonical	0	0	junction_1	0.866025403784439	2	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTACGTGTACGATTGT	NA	False	NA	NA	False	NA	NA	NA	18893923	18890856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_18891494_18891570_18891613_18893439_18893579_18893670_18893760_18893885
74217	chr5	+	846	1	Intergenic	novelGene_868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGACTTCGTGTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	137331917	137332763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_137331900_137332800
74218	chr7	+	1190	2	FSM	ENSMUSG00000002083.14	ENSMUST00000147267.2	881	2	195	-504	195	-4	multi-exon	FALSE	canonical	3	237	junction_1	0	26	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACACTCTTTTTGTTAGC	1027	False	NA	NA	False	NA	NA	NA	16047636	16052126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_16047743_16051042
74219	chr6	+	509	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	-76	5229	-76	-6	multi-exon	FALSE	canonical	3	145	junction_1	0	558	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCACTACTGTTTCTGG	7889	False	NA	NA	False	NA	NA	NA	134905978	134928532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134906224_134928268
74221	chr18	-	516	1	FSM	ENSMUSG00000102047.2	ENSMUST00000185628.2	258	1	20	-278	20	7	mono-exon	FALSE	NA	NA	NA	NA	NA	33	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGCTGTCTCATGCTCC	NA	False	NA	NA	False	NA	NA	NA	75422234	75421718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_75421700_75422200
74222	chr16	-	810	4	FSM	ENSMUSG00000022838.15	ENSMUST00000147053.2	667	4	-73	-70	-23	-6	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	50	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCAACTATTTGTTGGT	8177	False	NA	NA	False	NA	NA	NA	36648646	36614116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36648412
74223	chr7	+	1673	1	Intergenic	novelGene_3032	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTCTTCTGTAAAGTAAG	NA	False	NA	NA	False	NA	NA	NA	125725147	125726820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_125725100_125726800
74224	chr2	+	549	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	272.981024981591	2836	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAACTCTGAGCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	135488443	135493981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135492537_135492672_135493417_135493478_135493766
74226	chr8	+	679	4	ISM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	-33	5313	14	-5313	5prime_fragment	FALSE	canonical	3	123	junction_1	3.39934634239519	75	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCCCAGTGTTACAGTG	NA	False	NA	NA	False	NA	NA	NA	115166408	115175245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899
74227	chr1	+	699	4	ISM	ENSMUSG00000026575.16	ENSMUST00000191947.6	1635	13	-14	104367	-14	-1310	5prime_fragment	FALSE	canonical	3	36	junction_1	44.7511638582358	67	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTCAGGGATTGGTTCCT	NA	False	NA	NA	False	NA	NA	NA	164135627	164160496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_164135820_164140424_164140508_164155861_164155970_164160180
74228	chr7	-	710	4	NIC	ENSMUSG00000030707.16	novel	1747	11	NA	NA	11	-2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	7.36357401145817	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTCAGACTCCGGTGAA	NA	False	NA	NA	False	NA	NA	NA	126300388	126298946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126299158_126299428_126299645_126299755_126299814_126300163
74230	chr1	+	746	3	FSM	ENSMUSG00000026575.16	ENSMUST00000192225.2	513	3	-59	-174	17	174	multi-exon	FALSE	canonical	3	68	junction_2	21	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTACTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	164135257	164140910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_164135324_164135628_164135820_164140421
74232	chr6	+	339	3	NNC	ENSMUSG00000052738.15	novel	630	3	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	667.5	570	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTGGCTGTGAAGACT	2582	False	NA	NA	False	NA	NA	NA	73225631	73253886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_73225737_73233153_73233228_73253726
74233	chr5	-	1105	1	FSM	ENSMUSG00000106103.2	ENSMUST00000199082.2	1380	1	-1	276	-1	-276	mono-exon	FALSE	NA	NA	NA	NA	NA	19	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTGTGTGTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	108460616	108459511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_108459500_108460600
74235	chr9	-	1663	1	ISM	ENSMUSG00000047898.8	ENSMUST00000054414.5	2805	2	3598	986	3074	477	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAACCAAACCAAACCCAA	NA	False	NA	NA	False	NA	NA	NA	114322032	114320369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_114320400_114322000
74236	chr11	-	795	6	ISM	ENSMUSG00000097487.8	ENSMUST00000107252.9	853	7	402	3	-35	-3	3prime_fragment	FALSE	canonical	2	4	junction_5	2.65329983228432	56	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTCCCTTCCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	101315093	101309640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_101310013_101310500_101310555_101312690_101312781_101314605_101314705_101314802_101314870_101314980
74237	chr5	+	1351	1	NIC	ENSMUSG00000029283.18	novel	2864	11	NA	NA	-25	-9306	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAATTTATATACCCCCCC	NA	False	NA	NA	False	NA	NA	NA	107112401	107113752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_107112400_107113800
74238	chr11	+	624	4	FSM	ENSMUSG00000020519.6	ENSMUST00000020826.6	1151	4	526	1	526	-1	multi-exon	FALSE	canonical	3	543	junction_2	12.1197726417986	122	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTCGGTCAGGAGGATT	NA	False	NA	NA	False	NA	NA	NA	57692988	57701042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_57693116_57696869_57696993_57698849_57698949_57700767
74239	chr19	-	2452	1	Intergenic	novelGene_1259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGAATCCCATATCCCATA	NA	False	NA	NA	False	NA	NA	NA	40313103	40310651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_40310700_40313100
74241	SIRV2	-	305	1	ISM	SIRV2A	SIRV201	2051	11	4592	10	3417	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAGATTGACATCCCAAC	NA	False	NA	NA	False	NA	NA	NA	1315	1010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV2_-_1000_1300
74242	chr6	-	998	4	NNC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5480	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.1110148275803	1	61	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAAGGTAGATTTAGGCG	2764	False	NA	NA	False	NA	NA	NA	83675045	83669795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83670442_83671333_83671456_83672566_83672694_83674942
74245	chr5	-	1643	11	FSM	ENSMUSG00000041298.16	ENSMUST00000047257.15	6157	11	28	4486	9	-387	multi-exon	FALSE	canonical	0	0	junction_7	3.86781592116274	12	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTGGAAGTTTTAATC	2471	False	NA	NA	False	NA	NA	NA	148865429	148812879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148813147_148815667_148815795_148825688_148825824_148828438_148828566_148829319_148829479_148830492_148830599_148830958_148831087_148841376_148841540_148855405_148855567_148858046_148858223_148865335
74246	chr8	+	607	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	-19	1071	-13	-1071	multi-exon	FALSE	canonical	3	528	junction_1	75.9884859699152	1813	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACGTTGTCCTGTGTC	5503	False	NA	NA	False	NA	NA	NA	123338365	123342328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
74247	chr17	+	1490	1	Intergenic	novelGene_289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGATAAATATCTGCTGTA	NA	False	NA	NA	False	NA	NA	NA	68200788	68202278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_68200800_68202300
74248	chr12	-	831	1	ISM	ENSMUSG00000113918.2	ENSMUST00000221468.2	1171	3	5164	17	5164	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGAGAAGAATCTGACCA	3229	False	NA	NA	False	NA	NA	NA	87197096	87196265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_87196300_87197100
74250	chr5	-	1526	3	NNC	ENSMUSG00000087516.8	novel	490	4	NA	NA	-6875	-9684	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAATCAGGAGCAAGCA	NA	False	NA	NA	False	NA	NA	NA	119772533	119765649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_119765703_119770193_119770281_119771147
74251	chr1	+	738	4	FSM	ENSMUSG00000033701.14	ENSMUST00000080138.13	993	4	232	23	226	6	multi-exon	FALSE	canonical	3	223	junction_3	63.2525800966956	134	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATAAACCCTTTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	155434097	155448011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155447943
74252	chr15	-	291	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	133	-46	133	46	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATTGGAAC	NA	False	NA	NA	False	NA	NA	NA	90648726	90648435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_90648400_90648700
74253	chr18	-	1077	7	NIC	ENSMUSG00000063889.17	novel	1024	7	NA	NA	-1	-4	combination_of_known_splicesites	FALSE	canonical	3	6	junction_5	27.9090785707208	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTAAGGTCAATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	3325479	3267426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3267733_3273421_3273579_3295039_3295183_3295321_3295417_3299161_3299309_3309645_3309756_3325360
74256	chr12	-	838	7	NNC	ENSMUSG00000051166.11	novel	9482	41	NA	NA	-15376	-11419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	14.4539498638492	1	24	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGCCACAGGGGATGACTT	NA	False	NA	NA	False	NA	NA	NA	98809000	98793646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_98793770_98794965_98795056_98797118_98797251_98797330_98797484_98803501_98803644_98807809_98807938_98808930
74257	chr19	-	807	1	ISM	ENSMUSG00000018822.8	ENSMUST00000018966.8	1900	3	3459	16	3459	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGGACCAATTAATTTC	NA	False	NA	NA	False	NA	NA	NA	42187232	42186425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_42186400_42187200
74258	chr13	-	767	6	FSM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	30	7	30	-7	multi-exon	FALSE	canonical	3	362	junction_5	10.4115320678563	325	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCACCTGCCTGTCGA	NA	False	NA	NA	False	NA	NA	NA	49369472	49356433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369412
74259	chr12	+	508	1	NIC	ENSMUSG00000037787.15	novel	1065	5	NA	NA	55	-8935	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAGTCAGTTGCACT	1621	False	NA	NA	False	NA	NA	NA	111679774	111680282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_111679800_111680300
74260	chr11	-	870	1	Intergenic	novelGene_2412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGTTTAAGATGAAATAA	NA	False	NA	NA	False	NA	NA	NA	79169393	79168523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_79168500_79169400
74261	chr18	-	880	4	FSM	ENSMUSG00000024353.6	ENSMUST00000025211.6	904	4	17	7	17	-7	multi-exon	TRUE	canonical	2	5	junction_1	0.471404520791032	48	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTTGAGTAGTGTTGGC	NA	False	NA	NA	False	NA	NA	NA	35782403	35780326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35780780_35780876_35780988_35781311_35781437_35782212
74263	chr1	-	1404	3	Intergenic	novelGene_372	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	3	11	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGGGCCTTGATCAGAG	NA	False	NA	NA	False	NA	NA	NA	58808280	58801153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_58801864_58806398_58806855_58808042
74266	chr12	-	1309	1	Antisense	novelGene_ENSMUSG00000020561.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGACAGGGCGATGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	33481143	33479834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_33479800_33481100
74267	chr5	+	808	3	FSM	ENSMUSG00000106820.2	ENSMUST00000201128.2	1081	3	1	272	1	-272	multi-exon	FALSE	canonical	3	33	junction_2	30.5	192	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGAGTGATGATTTGAATA	NA	False	NA	NA	False	NA	NA	NA	147355411	147359582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_147355512_147357439_147357607_147359041
74268	chr5	-	706	3	ISM	ENSMUSG00000055235.12	ENSMUST00000068693.12	2364	6	15072	542	-74	-11	3prime_fragment	FALSE	canonical	3	15	junction_2	2.5	7	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGTGCTCTCAGTTGT	4760	False	NA	NA	False	NA	NA	NA	24920653	24917277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24917750_24917847_24917952_24920523
74269	chr15	+	568	2	Intergenic	novelGene_3271	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	0	82	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGAGTTGCCTTAGTC	NA	False	NA	NA	False	NA	NA	NA	36560556	36566197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_36560637_36565709
74270	chr11	+	602	2	Intergenic	novelGene_2419	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_1	0	33	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGGAATCAAAGCTACTG	NA	False	NA	NA	False	NA	NA	NA	79864567	79865598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_79864708_79865136
74271	chr19	-	996	1	Intergenic	novelGene_1286	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCGGACCAGGTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	47239489	47238493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_47238500_47239500
74272	chr7	-	728	6	FSM	ENSMUSG00000003872.10	ENSMUST00000003971.10	735	6	7	0	7	0	multi-exon	FALSE	canonical	2	8	junction_1	1.93907194296653	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7949	False	NA	NA	False	NA	NA	NA	45020000	45017314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45017423_45017727_45017892_45018564_45018775_45019338_45019411_45019550_45019670_45019945
74273	chr4	+	661	4	NNC	ENSMUSG00000001985.10	novel	8973	16	NA	NA	119012	-89617	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGACTAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	125503504	125518349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125503549_125505691_125505758_125517273_125517451_125517975
74276	chr5	+	770	5	ISM	ENSMUSG00000111375.5	ENSMUST00000162298.4	1408	6	-55	876	-55	-876	5prime_fragment	FALSE	canonical	3	12	junction_3	7.56637297521078	2	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAGCTCCCAAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	107585807	107618629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_107586012_107593728_107593924_107599854_107600052_107609303_107609422_107618573
74277	chr10	+	1224	9	ISM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	2799	43	2232	-43	3prime_fragment	FALSE	canonical	3	63	junction_3	5.24255424387769	26	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTCAGGAAACTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	127162423	127165769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
74279	chr1	+	991	4	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-17	-13754	multi-exon	FALSE	non_canonical	0	0	junction_1	15.5777619273972	1	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCTAGTGTAACTCCAG	NA	False	NA	NA	False	NA	NA	NA	63239454	63320427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_63239821_63246703_63246774_63317089_63317143_63319925
74280	chr13	-	1521	1	ISM	ENSMUSG00000021690.11	ENSMUST00000065537.9	8776	11	68187	0	68116	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTTGATTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	93568129	93566608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_93566600_93568100
74281	chr10	+	829	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	-1	6	-1	-6	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	89	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAACCCCCGACTCTGTG	6190	False	NA	NA	False	NA	NA	NA	80003672	80008614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
74282	chrX	-	666	2	NNC	ENSMUSG00000031325.16	novel	685	4	NA	NA	-71	35715	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	68	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTGTAAAGATAATTAGA	NA	False	NA	NA	False	NA	NA	NA	102355459	102190861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_102191307_102355238
74283	chr18	+	1733	1	FSM	ENSMUSG00000102748.2	ENSMUST00000193631.2	2756	1	828	195	828	-195	mono-exon	FALSE	NA	NA	NA	NA	NA	2	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTAGGGTTTCAATGTTT	2180	False	NA	NA	False	NA	NA	NA	37823715	37825448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_37823700_37825400
74284	chr11	+	1030	9	Fusion	ENSMUSG00000056342.17_ENSMUSG00000086459.3	novel	555	3	NA	NA	3615	-767	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCGGGAGCGCGCGGGTT	NA	False	NA	NA	False	NA	NA	NA	23440419	23447879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_23440573_23440667_23440716_23440982_23441115_23441474_23441589_23442223_23442309_23443279_23443392_23444974_23445061_23446686_23446885_23447777
74288	chr1	-	659	2	ISM	ENSMUSG00000057173.9	ENSMUST00000151913.3	2008	15	50420	6	21294	-6	3prime_fragment	FALSE	canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAATCCGTCTTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	39709737	39704466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_39704818_39709429
74289	chr8	-	1328	4	FSM	ENSMUSG00000031775.6	ENSMUST00000034227.6	1926	4	32	566	32	251	multi-exon	FALSE	canonical	2	4	junction_3	2.16024689946929	9	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCATCTGTTTGGAAAG	449	False	NA	NA	False	NA	NA	NA	95422874	95402087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_95402908_95403853_95403977_95405972_95406147_95422663
74290	chr6	+	506	2	Intergenic	novelGene_4130	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	129	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGTGTATAATGTGTAT	NA	False	NA	NA	False	NA	NA	NA	29639068	29642168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_29639206_29641799
74291	chr4	+	625	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2551	141	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	12.5	184	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAATCAAACCTCATTG	NA	False	NA	NA	False	NA	NA	NA	123557122	123565151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_123557174_123561406_123561541_123564711
74293	chr7	-	1188	3	Intergenic	novelGene_2982	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0.5	16	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTCTTACAAAATAATAT	5025	False	NA	NA	False	NA	NA	NA	75636899	75632663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_75633055_75634065_75634804_75636840
74294	chr1	+	557	1	Intergenic	novelGene_382	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAAATGAATTTTCATAG	1501	False	NA	NA	False	NA	NA	NA	63297710	63298267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_63297700_63298300
74299	chr11	+	951	2	NNC	ENSMUSG00000086591.2	novel	859	2	NA	NA	3771	8	intron_retention	FALSE	canonical	3	26	junction_1	0	125	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACGATGTCTAGAACT	2344	False	NA	NA	False	NA	NA	NA	69343144	69344510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69343301_69343715
74300	chr17	+	787	2	FSM	ENSMUSG00000034165.17	ENSMUST00000182591.2	283	2	-100	-404	11	4	multi-exon	FALSE	canonical	3	40	junction_1	0	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAATAAAAACGCTTA	NA	False	NA	NA	False	NA	NA	NA	47815986	47890215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47816192_47889633
74301	chr16	-	753	1	Intergenic	novelGene_3639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGCAAAACCAA	3761	False	NA	NA	False	NA	NA	NA	32243404	32242651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_32242700_32243400
74302	chr2	+	810	2	Antisense	novelGene_ENSMUSG00000090100.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCACTGAAATAAGCACAGGA	NA	False	NA	NA	False	NA	NA	NA	120565454	120567032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_120565866_120566633
74303	chr2	+	781	1	Antisense	novelGene_ENSMUSG00000078919.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTTGAGCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	168055816	168056597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_168055800_168056600
74304	chrX	-	662	1	FSM	ENSMUSG00000045179.10	ENSMUST00000135107.4	2065	1	1401	2	1401	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTGGAGTCCTGATAAT	NA	False	NA	NA	False	NA	NA	NA	59935635	59934973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_59935000_59935600
74305	chr8	-	930	5	NIC	ENSMUSG00000051906.16	novel	1150	6	NA	NA	79	-431	intron_retention	FALSE	canonical	2	2	junction_1	2.54950975679639	10	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGAGATGAGGACTG	NA	False	NA	NA	False	NA	NA	NA	4155382	4153224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_4153735_4154101_4154254_4154484_4154572_4154822_4154892_4155270
74307	chr1	+	604	1	NIC	ENSMUSG00000097113.8	novel	496	5	NA	NA	-1277	-6928	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATACAAGAATAAATTAGA	NA	False	NA	NA	False	NA	NA	NA	136602933	136603537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_136602900_136603500
74308	chr5	+	782	3	NNC	ENSMUSG00000029234.14	novel	821	3	NA	NA	-14	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	531	8	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATAACTAGTACTCGTT	NA	False	NA	NA	False	NA	NA	NA	76351952	76357078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_76352130_76352483_76352646_76356635
74311	chr7	-	1395	3	FSM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	-22	-717	-22	-7	multi-exon	FALSE	canonical	3	19	junction_1	6.5	200	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAATTGTGGTAGTGGT	NA	False	NA	NA	False	NA	NA	NA	75431869	75418792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_75419986_75430372_75430505_75431799
74312	chr9	-	557	1	Intergenic	novelGene_1146	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACTTTACTTGAATAATAA	NA	False	NA	NA	False	NA	NA	NA	98743777	98743220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_98743200_98743800
74313	chr4	+	637	2	ISM	ENSMUSG00000087084.2	ENSMUST00000126252.2	1720	3	-156	3094	-156	-3094	5prime_fragment	FALSE	canonical	3	28	junction_1	0	81	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAAGTTCCTTTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	140107784	140109791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_140108031_140109400
74314	chr1	+	909	5	NNC	ENSMUSG00000038034.16	novel	2278	7	NA	NA	59	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	335.762099558601	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCCTGTTGTGTCTTCTC	3802	False	NA	NA	False	NA	NA	NA	172139992	172147406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_172140161_172143717_172143831_172146293_172146535_172146859_172146991_172147150
74315	chr2	+	409	2	FSM	ENSMUSG00000070529.8	ENSMUST00000094344.6	459	2	41	9	41	-9	multi-exon	FALSE	canonical	2	4	junction_1	0	99	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTCATATACACTCTTAA	34	False	NA	NA	False	NA	NA	NA	164498006	164499279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164498119_164498982
74316	chr14	-	959	3	Intergenic	novelGene_604	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGAGAACTCACCGCTGG	2757	False	NA	NA	False	NA	NA	NA	70054235	70050905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_70051216_70053295_70053439_70053729
74318	chr4	+	518	5	FSM	ENSMUSG00000042198.13	ENSMUST00000149544.8	426	5	-38	-54	-36	0	multi-exon	FALSE	canonical	3	70	junction_1	158.419537936455	238	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	3938851	3943526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720_3942820_3943387
74323	chr14	+	1503	3	Antisense	novelGene_ENSMUSG00000085615.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTAGGTGCTAGAGCCAT	NA	False	NA	NA	False	NA	NA	NA	122337917	122343572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_122338533_122342344_122342856_122343195
74324	chr1	-	915	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	75	17	-8	-15	multi-exon	FALSE	canonical	3	257	junction_6	130.826539101718	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCTTCCCCTGGTAGCC	7358	False	NA	NA	False	NA	NA	NA	171122522	171116152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
74326	chr19	+	599	2	ISM	ENSMUSG00000024863.7	ENSMUST00000025797.7	1089	6	5447	5	5447	-5	3prime_fragment	FALSE	canonical	2	5	junction_1	0	37	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGACTCTTGTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	30215788	30217082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_30215856_30216550
74327	chr4	+	801	1	Genic_Genomic	ENSMUSG00000028284.14	novel	NA	NA	NA	NA	30195	1	mono-exon	FALSE	NA	NA	NA	NA	NA	30	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACAGTTTACTGAGTTTT	7120	False	NA	NA	False	NA	NA	NA	32022667	32023468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_32022700_32023500
74328	chr17	-	807	2	NNC	ENSMUSG00000079471.5	novel	804	2	NA	NA	82	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTATTGGTGGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	45912810	45911902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45912616_45912716
74329	chr7	+	673	1	ISM	ENSMUSG00000048481.16	ENSMUST00000059331.9	2173	3	9844	3	9120	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAACTTGAGGCTCTGAGA	7981	False	NA	NA	False	NA	NA	NA	18735013	18735686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_18735000_18735700
74332	chr4	+	776	4	Intergenic	novelGene_1852	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	23.6971634495683	64	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTGAGAAAGTGACTGG	NA	False	NA	NA	False	NA	NA	NA	53340103	53356041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_53340569_53340696_53340778_53342594_53342685_53355901
74334	chr19	-	692	5	NIC	ENSMUSG00000016495.13	novel	1020	6	NA	NA	-11	-5	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCACCAAATCATGGCAG	NA	False	NA	NA	False	NA	NA	NA	29339284	29326109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
74335	chr14	+	526	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	-29	1116	8	-2	multi-exon	FALSE	canonical	3	4092	junction_4	3560.754932244	4	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAAAGCTCCTACACGTC	NA	False	NA	NA	False	NA	NA	NA	24540756	24545911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
74337	chr8	+	526	3	FSM	ENSMUSG00000048478.8	ENSMUST00000060133.8	491	3	-42	7	2	-7	multi-exon	FALSE	canonical	3	11	junction_2	0.5	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGTAGCTGGGATCCTT	NA	False	NA	NA	False	NA	NA	NA	123939580	123948776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123939737_123939826_123939977_123948556
74338	chr13	-	1316	2	Antisense	novelGene_ENSMUSG00000049985.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	11	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAGAATTTGAAATTAGA	NA	False	NA	NA	False	NA	NA	NA	112490632	112488112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_112489000_112490203
74339	chr14	+	941	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	98	3503	98	-3503	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAGATAAATGTAGAAGCG	9728	False	NA	NA	False	NA	NA	NA	47535823	47557049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
74340	chr17	-	751	3	Antisense	novelGene_ENSMUSG00000003279.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_2	2.5	42	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGTTTGTAAAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	71130660	71125680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_71125929_71126393_71126694_71130457
74343	chr7	-	361	5	NNC	ENSMUSG00000030744.14	novel	489	6	NA	NA	-1	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5362.5289509708	1	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTTGAACAAAGACAAGGC	8421	False	NA	NA	False	NA	NA	NA	99132859	99128105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128522_99131500_99131551_99131751_99131908_99132798
74344	chr17	+	1096	1	Genic_Genomic	ENSMUSG00000100865.3	novel	NA	NA	NA	NA	-166	-21269	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCATGTATTATTTGGTA	NA	False	NA	NA	False	NA	NA	NA	71160595	71161691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_71160600_71161700
74345	chr18	+	1000	1	Intergenic	novelGene_4495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAACCCAGATGGTCATA	NA	False	NA	NA	False	NA	NA	NA	8695948	8696948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_8695900_8696900
74346	chr3	-	1010	2	FSM	ENSMUSG00000053870.8	ENSMUST00000195505.2	442	2	11	-579	11	112	multi-exon	FALSE	canonical	3	7	junction_1	0	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGGCCAACATTCATCT	NA	False	NA	NA	False	NA	NA	NA	154798853	154796467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_154797196_154798571
74347	chrX	+	1386	1	Intergenic	novelGene_3988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACGCCAATCTGTCAAGT	NA	False	NA	NA	False	NA	NA	NA	99763756	99765142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_99763800_99765100
74349	chr17	+	479	1	Intergenic	novelGene_165	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAAGAACTGAGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	38327122	38327601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_38327100_38327600
74351	chr17	+	416	1	Intergenic	novelGene_275	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGCCAGGCATCCCAGG	NA	False	NA	NA	False	NA	NA	NA	65920658	65921074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_65920700_65921100
74353	chr11	+	440	4	NNC	ENSMUSG00000020778.13	novel	902	4	NA	NA	9	-3227	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	58.4541605780879	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTGCAGCCATGGCCTG	9119	False	NA	NA	False	NA	NA	NA	116089732	116102847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_116089810_116095670_116095806_116096436_116096595_116102777
74354	chr17	-	952	9	ISM	ENSMUSG00000036026.16	ENSMUST00000145873.8	1011	11	-146	5465	1	570	5prime_fragment	FALSE	canonical	3	7	junction_8	63.393118711734	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAAGAAACATTTCGAG	NA	False	NA	NA	False	NA	NA	NA	45997045	45984104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45990162_45990243_45990457_45990641_45996841
74355	chr10	-	313	1	ISM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	724	3	673	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCTGTTACGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	128384298	128383985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128384000_128384300
74358	chr16	+	965	7	ISM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	-96	5865	-96	239	5prime_fragment	FALSE	canonical	3	143	junction_5	24.6153745993569	21	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTACTGCTGCTTTATGAT	NA	False	NA	NA	False	NA	NA	NA	8455441	8469530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273
74361	chr9	-	227	1	Antisense	novelGene_ENSMUSG00000032185.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGGCGAGGCCATAGA	NA	False	NA	NA	False	NA	NA	NA	21499677	21499450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21499400_21499700
74362	chr13	-	411	4	NNC	ENSMUSG00000021660.15	novel	888	6	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3016.04612402102	1	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTATCATTTTACT	NA	False	NA	NA	False	NA	NA	NA	98453448	98446405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98446637_98450219_98450261_98452742_98452807_98453373
74363	chr19	+	1780	7	NNC	ENSMUSG00000067242.12	novel	7780	8	NA	NA	5934	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	35	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAAGGTAATTATTTACA	NA	False	NA	NA	False	NA	NA	NA	38259791	38295259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38259833_38272417_38272486_38272589_38272662_38286376_38286449_38289155_38289326_38289608_38289774_38294067
74364	chr4	-	804	7	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	2904	2	combination_of_known_junctions	TRUE	canonical	0	0	junction_6	151.016279475647	62	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTCTGAGTTTTTT	2940	False	NA	NA	False	NA	NA	NA	11073245	11051042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11070199_11070323_11073143
74365	chr5	-	1325	5	NIC	ENSMUSG00000055923.17	novel	1080	5	NA	NA	-25	132	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	26.7301328092473	90	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGAAGCTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	77053300	77043956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
74366	chr9	+	1987	12	NNC	ENSMUSG00000038060.16	novel	2318	12	NA	NA	9	-288	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	0.74965556829412	6	25	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCAACCATTAGACATGAG	4917	False	NA	NA	False	NA	NA	NA	118931585	118954075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_118931994_118934869_118935021_118939168_118939280_118941124_118941313_118941479_118941695_118944031_118944111_118948715_118948804_118949870_118950045_118950855_118950993_118952212_118952306_118953187_118953279_118953823
74367	chr1	-	2005	6	NNC	ENSMUSG00000034212.15	novel	3246	18	NA	NA	3236	-14292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.979795897113271	1	113	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGAACCTGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	92827392	92812142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_92812988_92813859_92814017_92814344_92814562_92816168_92816639_92823790_92823935_92827220
74369	chr14	-	1466	3	Intergenic	novelGene_638	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.5	8	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAATAGAAATAGTGGCTA	4575	False	NA	NA	False	NA	NA	NA	106096609	106094629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_106094925_106094960_106096114_106096591
74370	chr14	-	1001	4	ISM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	86	2045	72	-1739	5prime_fragment	FALSE	canonical	3	21	junction_2	17.4610678049451	50	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATATGAGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	70879622	70875687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70876014_70876241_70876420_70878971_70879009_70879162
74371	chr12	+	878	5	FSM	ENSMUSG00000021076.7	ENSMUST00000222291.2	615	5	-33	-230	-5	230	multi-exon	FALSE	canonical	3	306	junction_4	20.5836707124847	54	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAAAAGTACATTTTTT	9698	False	NA	NA	False	NA	NA	NA	70984683	70994716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225
74372	chr14	+	482	2	ISM	ENSMUSG00000022176.12	ENSMUST00000164697.8	1194	3	-19	1869	-7	-84	5prime_fragment	FALSE	canonical	2	3	junction_1	0	1	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGTATTCAGGGGCACC	NA	False	NA	NA	False	NA	NA	NA	54713689	54715267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_54713832_54714927
74373	chr10	-	1195	6	NIC	ENSMUSG00000019873.9	novel	838	3	NA	NA	0	-8	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	65.7346179725721	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAAAAGGGTTGACATCT	NA	False	NA	NA	False	NA	NA	NA	66932625	66864712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_66865466_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
74375	chr10	-	1773	7	NIC	ENSMUSG00000020102.16	novel	2562	9	NA	NA	346	-510	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.372677996249965	3	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAGTGTTCATGAATTTA	NA	False	NA	NA	False	NA	NA	NA	125177702	125063865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_125064159_125066460_125067274_125069310_125069455_125130463_125130714_125137825_125137951_125175007_125175103_125177649
74376	chr1	+	596	4	NNC	ENSMUSG00000073676.5	novel	774	4	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3940.03979111323	2	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGTCTTTGGTAATTT	NA	False	NA	NA	False	NA	NA	NA	55127460	55130467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_55127572_55128209_55128366_55129871_55129962_55130228
74377	chr17	-	608	5	NNC	ENSMUSG00000023935.11	novel	997	8	NA	NA	19162	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	5.35607132140714	6	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTGTAATATGGTATT	NA	False	NA	NA	False	NA	NA	NA	45766590	45756802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45757010_45760360_45760477_45763603_45763667_45765016_45765138_45766489
74379	chr7	-	442	4	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	-20	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	278.6000717875	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCATGCCTAAAGCACAAAT	NA	False	NA	NA	False	NA	NA	NA	118454874	118441458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118441622_118452003_118452206_118452515_118452564_118454845
74380	chr1	-	1972	1	NIC	ENSMUSG00000025950.17	novel	2283	9	NA	NA	-6	-9177	mono-exon	FALSE	NA	NA	NA	NA	NA	4	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCCCTCTTACCTCTGC	NA	False	NA	NA	False	NA	NA	NA	65225603	65223631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_65223600_65225600
74382	chr4	+	1001	7	NIC	ENSMUSG00000028277.14	novel	3530	8	NA	NA	-37	-2334	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	28.5214344348636	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTGTTTACAAAAAGATT	43	True	NA	NA	False	NA	NA	NA	33031490	33050029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33049681
74383	chr10	-	1033	8	NNC	ENSMUSG00000000731.16	novel	1926	14	NA	NA	-24	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	7.19977323905952	21	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGTACACCTGGTGGATG	NA	False	NA	NA	False	NA	NA	NA	77874118	77865862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77870542_77871490_77871668_77872518_77872619_77873706_77873823_77874074
74387	chr11	+	1321	7	FSM	ENSMUSG00000061718.13	ENSMUST00000078694.13	2001	7	620	60	620	-52	multi-exon	FALSE	canonical	1	3	junction_1	2.21108319357027	9	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCCCTTACTCTAGGCC	NA	False	NA	NA	False	NA	NA	NA	98239849	98248562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98240001_98241394_98241456_98241710_98241734_98242091_98242168_98246152_98246336_98247650_98247774_98247858
74388	chr9	-	1331	1	ISM	ENSMUSG00000051243.15	ENSMUST00000163200.3	4123	2	4077	11	2934	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAACAGGACTCGGTGAG	NA	False	NA	NA	False	NA	NA	NA	58104921	58103590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_58103600_58104900
74389	chrX	+	807	1	Intergenic	novelGene_4079	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTTTAATCCCAGCACTT	NA	False	NA	NA	False	NA	NA	NA	149876157	149876964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_149876200_149877000
74390	chr2	-	1356	1	NIC	ENSMUSG00000016257.16	novel	1553	6	NA	NA	-6	-2168	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGTGTCATCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	174314697	174313341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_174313300_174314700
74392	chr6	+	520	1	ISM	ENSMUSG00000039629.15	ENSMUST00000151738.4	5281	21	42132	12	42131	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCTGGACTTAAGAAATC	1592	False	NA	NA	False	NA	NA	NA	29959142	29959662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_29959100_29959700
74394	chr4	+	612	2	Antisense	novelGene_ENSMUSG00000085816.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAGCCAAGATAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	142071812	142073752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_142071992_142073319
74395	chr3	-	553	1	ISM	ENSMUSG00000028158.15	ENSMUST00000197680.2	2012	2	1299	854	-281	-854	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGAAATTCATCGAACT	NA	False	NA	NA	False	NA	NA	NA	137849430	137848877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_137848900_137849400
74396	chr7	-	499	3	ISM	ENSMUSG00000051811.15	ENSMUST00000184143.8	435	4	0	39	0	24	intron_retention	FALSE	canonical	0	0	junction_1	401.5	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCTTTGTGCCACAAAT	NA	False	NA	NA	False	NA	NA	NA	4756022	4754829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_4754975_4755106_4755161_4755722
74398	chr7	-	200	1	Intergenic	novelGene_2866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	546	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGACACTCAGACATTC	NA	False	NA	NA	False	NA	NA	NA	3234067	3233867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_3233900_3234100
74399	chr19	+	1040	6	FSM	ENSMUSG00000069833.14	ENSMUST00000092955.11	830	6	-10	-200	1	0	multi-exon	FALSE	canonical	3	34	junction_5	17.6703140888893	185	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCTGTGATCACC	NA	False	NA	NA	False	NA	NA	NA	8966648	9054278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939
74400	chr11	-	1599	1	Intergenic	novelGene_2248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACCCTGGACATATTTGG	NA	False	NA	NA	False	NA	NA	NA	33191556	33189957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_33190000_33191600
74401	chr4	-	828	5	NIC	ENSMUSG00000073705.11	novel	689	5	NA	NA	-5	105	combination_of_known_junctions	FALSE	canonical	3	8	junction_4	178.983763230076	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGCCCAGCTGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	149222010	149212891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_149213386_149214609_149214677_149216095_149216130_149216734_149216890_149221932
74402	chr8	+	427	2	NNC	ENSMUSG00000031820.10	novel	1433	9	NA	NA	21	-72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	33	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCCTTGGTGTCACTTTG	NA	False	NA	NA	False	NA	NA	NA	71849525	71857191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71849661_71856899
74403	chr2	+	837	4	ISM	ENSMUSG00000044103.5	ENSMUST00000057567.3	1648	5	716	503	716	-503	3prime_fragment	FALSE	canonical	1	4	junction_1	0.471404520791032	14	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTAGAATGCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	24077203	24083077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_24077314_24077712_24077821_24078633_24078774_24082598
74404	chr18	-	2397	1	ISM	ENSMUSG00000097330.3	ENSMUST00000180931.2	3602	2	6380	619	6380	-619	mono-exon	FALSE	NA	NA	NA	NA	NA	5	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACGGAATTCTCTCAAAGC	8364	False	NA	NA	False	NA	NA	NA	37882627	37880230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_37880200_37882600
74407	chr11	+	529	1	FSM	ENSMUSG00000118837.1	ENSMUST00000240231.1	191	1	0	-338	0	338	mono-exon	FALSE	NA	NA	NA	NA	NA	51	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGGACTATGCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	101549063	101549592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101549100_101549600
74409	chr12	+	524	4	NNC	ENSMUSG00000064326.14	novel	924	4	NA	NA	16	-10	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	808.851174334452	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTTGCACAAGGACTCC	7159	False	NA	NA	False	NA	NA	NA	112611416	112615569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_112611519_112613357_112613467_112614258_112614416_112615413
74410	chr4	-	1122	2	Intergenic	novelGene_1863	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATCACCTCTTTCTAATT	NA	False	NA	NA	False	NA	NA	NA	57923113	57921479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_57921758_57922269
74411	chr4	-	569	3	Antisense	novelGene_ENSMUSG00000028480.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	43957465	43955612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_43955934_43956211_43956384_43957389
74412	chr18	-	1001	4	ISM	ENSMUSG00000024386.10	ENSMUST00000234651.2	1575	9	4991	16	2538	-13	3prime_fragment	FALSE	canonical	3	7	junction_1	1.69967317119759	34	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATGCAACAAACATACCTC	NA	False	NA	NA	False	NA	NA	NA	32266261	32256194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_32256870_32258147_32258266_32260445_32260592_32266199
74413	chr8	-	579	4	NIC	ENSMUSG00000058833.12	novel	671	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	348.934887272046	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	NA	False	NA	NA	NA	70959387	70956944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70957160_70958405_70958611_70959146_70959230_70959311
74415	chr8	+	893	1	ISM	ENSMUSG00000033763.15	ENSMUST00000052457.15	4717	14	19023	9	3382	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	52	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGTTAACGCCCCGGCTT	NA	False	NA	NA	False	NA	NA	NA	111467130	111468023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111467100_111468000
74416	chr4	+	1112	1	Genic_Genomic	ENSMUSG00000028773.9	novel	NA	NA	NA	NA	-729	-6486	mono-exon	FALSE	NA	NA	NA	NA	NA	13	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGCGGAGGGTGGCCT	NA	False	NA	NA	False	NA	NA	NA	130201658	130202770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_130201700_130202800
74420	chr18	-	622	3	Antisense	novelGene_ENSMUSG00000098098.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCCGCCTCTGCAGCTC	6118	False	NA	NA	False	NA	NA	NA	61780545	61772655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61772803_61778232_61778437_61780274
74422	chrX	+	1284	1	ISM	ENSMUSG00000015342.7	ENSMUST00000015486.7	5076	3	39199	12	39199	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAATTTTCTCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	9178193	9179477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_9178200_9179500
74424	chr8	+	252	1	Intergenic	novelGene_1724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTAGGTTTGTTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	107923436	107923688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_107923400_107923700
74425	chr8	+	1027	1	ISM	ENSMUSG00000033763.15	ENSMUST00000052457.15	4717	14	17429	1469	1788	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCTAGACAAAGAACTATG	NA	False	NA	NA	False	NA	NA	NA	111465536	111466563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111465500_111466600
74426	chr5	+	951	2	ISM	ENSMUSG00000025854.16	ENSMUST00000161641.2	611	4	885	-632	885	-40	3prime_fragment	TRUE	canonical	3	16	junction_1	0	9	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGCAATAAAGATACAGCA	600	False	NA	NA	False	NA	NA	NA	138793829	138795792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_138793851_138794862
74427	chr18	-	610	3	ISM	ENSMUSG00000024235.12	ENSMUST00000173930.8	2236	7	4	11700	4	4415	5prime_fragment	FALSE	canonical	2	5	junction_1	11.5	56	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGCGTGCAAACTGGT	0	True	NA	NA	False	NA	NA	NA	4352953	4343039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_4343190_4348980_4349339_4352851
74428	chr17	-	1944	1	Intergenic	novelGene_273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTTCCTTAATGCAT	NA	False	NA	NA	False	NA	NA	NA	64450002	64448058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_64448100_64450000
74430	chr18	-	1261	1	Antisense	novelGene_ENSMUSG00000024430.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAGTGCTATAAGAAAAAAA	905	False	NA	NA	False	NA	NA	NA	12888184	12886923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_12886900_12888200
74434	chr4	+	306	2	Antisense	novelGene_ENSMUSG00000041135.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGTGATTGAGAGAGTGAC	NA	False	NA	NA	False	NA	NA	NA	16138073	16152019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_16138250_16151889
74435	chr13	-	534	3	ISM	ENSMUSG00000049658.14	ENSMUST00000109379.9	7567	38	65	75181	65	-948	5prime_fragment	FALSE	canonical	3	24	junction_1	1.5	2	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTAAAATTCATTTATG	7056	False	NA	NA	False	NA	NA	NA	100240281	100234993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_100235104_100235460_100235738_100240134
74436	chrX	-	401	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	52	-45	52	45	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTAATACCTCGTG	NA	False	NA	NA	False	NA	NA	NA	51861574	51861173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51861200_51861600
74442	chr5	+	921	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	22	13	22	-9	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	77	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCCCCTAAATTACCGA	NA	False	NA	NA	False	NA	NA	NA	137777187	137778359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
74443	chr5	+	1674	5	FSM	ENSMUSG00000029205.13	ENSMUST00000031108.9	1843	5	132	37	132	-37	multi-exon	FALSE	canonical	0	0	junction_4	1.08972473588517	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAAATCAATAAAT	NA	False	NA	NA	False	NA	NA	NA	66124598	66134632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_66124855_66125124_66125271_66126457_66126613_66128158_66128692_66134048
74445	chr5	+	1072	1	FSM	ENSMUSG00000051502.8	ENSMUST00000052825.7	1037	1	-35	0	-35	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGCCCAGCCTGTGTTT	1509	False	NA	NA	False	NA	NA	NA	137292855	137293927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137292900_137293900
74447	chr14	-	611	4	ISM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	-6	4084	-6	-2804	5prime_fragment	FALSE	canonical	3	219	junction_2	5.09901951359278	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCCGCTGCCTAACTTCA	NA	False	NA	NA	False	NA	NA	NA	14389412	14382022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_14382310_14385771_14385857_14385978_14386066_14389260
74448	chr15	+	834	6	NIC	ENSMUSG00000033088.20	novel	3807	8	NA	NA	13	2674	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.35646599662505	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCGAAAGGCCACCAGGTC	NA	False	NA	NA	False	NA	NA	NA	78832131	78845247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_78832249_78835103_78835256_78841304_78841405_78842426_78842573_78844054_78844275_78845148
74450	chr7	+	346	1	ISM	ENSMUSG00000047751.10	ENSMUST00000168457.3	1227	2	978	0	978	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	NA	NA	NA	139524679	139525025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_139524700_139525000
74452	chr8	-	1477	2	FSM	ENSMUSG00000031504.7	ENSMUST00000033900.7	1392	2	33	-118	33	118	multi-exon	FALSE	canonical	1	4	junction_1	0	10	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTGAATCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11528677	11503399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_11504527_11528327
74454	chr10	-	753	3	Antisense	novelGene_ENSMUSG00000039994.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_2	0.5	48	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCACATCCGGCTCTGCA	NA	False	NA	NA	False	NA	NA	NA	128068128	128064990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128065342_128066773_128066877_128067829
74455	chr4	+	431	3	Intergenic	novelGene_1937	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	5	69	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCATACAGGAGCTTGTAT	NA	False	NA	NA	False	NA	NA	NA	118930247	118941585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_118930271_118930792_118930857_118941241
74456	chr19	-	1949	1	Genic_Genomic	ENSMUSG00000118087.2	novel	NA	NA	NA	NA	74	8	mono-exon	FALSE	NA	NA	NA	NA	NA	4	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGACATTTCGCTGCCTTC	NA	False	NA	NA	False	NA	NA	NA	46293970	46292021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_46292000_46294000
74457	chr8	-	1131	3	ISM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	71	1896	4	148	5prime_fragment	FALSE	canonical	3	93	junction_2	1	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTCTCACTAGTATACT	NA	False	NA	NA	False	NA	NA	NA	27618637	27615287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_27616170_27617487_27617548_27618448
74459	chr10	+	519	1	Antisense	novelGene_ENSMUSG00000091994.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCGCCACGTACCCACTC	749	False	NA	NA	False	NA	NA	NA	79689626	79690145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_79689600_79690100
74460	chr12	+	1758	1	FSM	ENSMUSG00000010608.16	ENSMUST00000183242.2	1060	1	-1664	966	-1664	-846	mono-exon	FALSE	NA	NA	NA	NA	NA	2	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAAAGTTACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	83703634	83705392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_83703600_83705400
74461	chr4	-	1096	1	ISM	ENSMUSG00000028207.19	ENSMUST00000146441.8	2576	5	38269	775	8367	749	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCCAAACTATGAACACGG	NA	False	NA	NA	False	NA	NA	NA	9630893	9629797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_9629800_9630900
74462	chr4	+	373	3	ISM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	1678	8	-26	-1	3prime_fragment	FALSE	canonical	3	5596	junction_2	103	3	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAACCGGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	152411987	152416929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152412043_152414460_152414586_152416736
74463	chr2	-	1164	1	NIC	ENSMUSG00000055897.14	novel	2767	19	NA	NA	4699	5	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAACAGTGTACTCATTTT	8869	False	NA	NA	False	NA	NA	NA	173427856	173426692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_173426700_173427900
74464	chr12	-	965	1	Intergenic	novelGene_4353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGTAAACTTAAAATAGTTT	NA	False	NA	NA	False	NA	NA	NA	52550286	52549321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_52549300_52550300
74466	chr13	-	1098	6	ISM	ENSMUSG00000069170.15	ENSMUST00000128120.2	1591	8	72460	95	71981	-94	3prime_fragment	FALSE	canonical	0	0	junction_3	1.26491106406735	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATTATCCAAAAATATT	NA	False	NA	NA	False	NA	NA	NA	81418974	81243281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_81243621_81251337_81251516_81255021_81255211_81303273_81303396_81330764_81330923_81418862
74467	chr4	-	595	6	FSM	ENSMUSG00000073888.14	ENSMUST00000108037.9	590	6	-20	15	-4	-4	multi-exon	FALSE	canonical	3	53	junction_3	16.7020956768904	323	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATCTCCAAAAACTTCC	8	False	NA	NA	False	NA	NA	NA	41774162	41769481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735_41773804_41774099
74470	chr4	+	953	2	FSM	ENSMUSG00000037583.3	ENSMUST00000042706.3	1132	2	8	171	8	-171	multi-exon	FALSE	canonical	3	8	junction_1	0	15	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTCCAGCAAGCCCTTG	NA	False	NA	NA	False	NA	NA	NA	133280694	133283676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_133281277_133283305
74471	chr9	+	1301	8	ISM	ENSMUSG00000049723.15	ENSMUST00000127722.2	2060	10	2413	224	2413	200	3prime_fragment	TRUE	canonical	1	1	junction_4	1.97948663722157	18	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAATTGAAAGAAAGTGT	60	False	NA	NA	False	NA	NA	NA	7349818	7358664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_7349872_7350011_7350138_7352887_7353050_7353445_7353570_7354721_7354856_7355311_7355472_7357804_7357909_7358226
74472	chr6	-	629	3	Intergenic	novelGene_4165	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	36	junction_2	7	103	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCATCCTTCAGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	48999377	48995457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_48995945_48997387_48997456_48999303
74473	chrX	+	583	2	ISM	ENSMUSG00000039278.11	ENSMUST00000041096.4	2193	3	2438	1175	2438	-1175	3prime_fragment	FALSE	canonical	3	96	junction_1	0	98	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGTCTGAGCGCCCT	NA	False	NA	NA	False	NA	NA	NA	7788498	7789474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_7788754_7789146
74474	ERCC-00002	+	508	2	Genic_Genomic	ERCC-00002A	novel	1045	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	176	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_ERCC-00002_+_225_761
74475	chr18	+	793	2	ISM	ENSMUSG00000034006.18	ENSMUST00000134545.3	3258	4	-4	17678	-3	-6012	5prime_fragment	FALSE	canonical	3	39	junction_1	0	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTAGTTAGCAACAGGAAG	NA	False	NA	NA	False	NA	NA	NA	80299517	80300688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_80299619_80299996
74476	chr2	+	1787	2	Antisense	novelGene_ENSMUSG00000043909.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	44	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCTAGCAGCTTAGAGCG	NA	False	NA	NA	False	NA	NA	NA	121031196	121033052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_121032608_121032676
74477	chr13	-	467	3	ISM	ENSMUSG00000021363.15	ENSMUST00000224423.2	888	7	9110	6307	31	-6307	internal_fragment	FALSE	canonical	2	5	junction_2	1	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTACGTCTTTATTTTACG	NA	False	NA	NA	False	NA	NA	NA	41223904	41209171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_41209292_41210078_41210134_41223612
74483	chr1	+	839	2	Antisense	novelGene_ENSMUSG00000009633.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	559	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGAAGCGGGGCGGGAGT	NA	False	NA	NA	False	NA	NA	NA	192954476	192955498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_192955118_192955300
74487	chr3	-	652	3	NNC	ENSMUSG00000068860.6	novel	1289	3	NA	NA	623	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	15.5	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAAAAATACTTTGGTCT	NA	False	NA	NA	False	NA	NA	NA	95148286	95144426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95144541_95147260_95147418_95147905
74488	chr9	+	348	1	FSM	ENSMUSG00000093803.6	ENSMUST00000217354.3	2557	1	-62	2271	-62	1092	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACCCTGGGGTGCACAG	NA	False	NA	NA	False	NA	NA	NA	124202140	124202488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_124202100_124202500
74489	chr19	-	832	5	FSM	ENSMUSG00000044948.18	ENSMUST00000159204.2	892	5	-27	87	-6	-87	multi-exon	FALSE	canonical	1	1	junction_1	1.4790199457749	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACTTTCAGGGTAATTAT	NA	False	NA	NA	False	NA	NA	NA	47825827	47811479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_47811619_47814200_47814369_47818822_47818920_47824002_47824257_47825653
74490	chr9	-	1565	3	NIC	ENSMUSG00000074397.6	novel	676	4	NA	NA	-123	439	intron_retention	FALSE	canonical	3	31	junction_1	2.5	202	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCACAGAACCTTGTACC	9091	False	NA	NA	False	NA	NA	NA	44352556	44346412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44347400_44347500_44347576_44352053
74491	chr3	-	524	2	FSM	ENSMUSG00000015943.12	ENSMUST00000016087.4	729	2	-49	254	-49	21	multi-exon	FALSE	canonical	3	441	junction_1	0	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCCGAATGGGTCGACTG	NA	False	NA	NA	False	NA	NA	NA	96104951	96104157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_96104596_96104865
74492	chr4	+	824	5	NNC	ENSMUSG00000028979.18	novel	794	4	NA	NA	-3631	-4	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	12.0933866224478	87	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCACTGTGGCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	148683379	148688870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148683507_148687124_148687354_148687448_148687627_148688143_148688276_148688712
74495	chr10	+	688	2	FSM	ENSMUSG00000052291.9	ENSMUST00000219273.2	676	2	-13	1	-13	-1	multi-exon	FALSE	canonical	3	6	junction_1	0	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTCGCACCGAAAACTT	NA	False	NA	NA	False	NA	NA	NA	116417467	116419418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_116417628_116418890
74497	chr19	-	442	3	NNC	ENSMUSG00000024654.9	novel	4195	7	NA	NA	36	3255	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	223.5	15	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAATGAAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	9112964	9106567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_9106660_9112087_9112352_9112878
74498	chr8	+	823	4	ISM	ENSMUSG00000109714.2	ENSMUST00000210289.2	961	5	250	-2	250	2	3prime_fragment	FALSE	canonical	1	1	junction_1	1.69967317119759	18	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTACCCTTTGCTCTCT	3175	False	NA	NA	False	NA	NA	NA	36191785	36201924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_36191845_36192585_36192672_36198015_36198167_36201397
74499	chr13	+	800	3	NNC	ENSMUSG00000112941.2	novel	1004	3	NA	NA	9340	17800	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGGAGGCAGGAGCTGAT	NA	False	NA	NA	False	NA	NA	NA	54465916	54484616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54466499_54481727_54481881_54484551
74500	chr11	-	464	1	FSM	ENSMUSG00000083061.2	ENSMUST00000118307.2	348	1	-69	-47	-69	47	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAATTAAG	NA	False	NA	NA	False	NA	NA	NA	49569953	49569489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_49569500_49570000
74502	chr5	+	1197	7	FSM	ENSMUSG00000029660.11	ENSMUST00000201683.4	1456	7	3	256	0	103	multi-exon	FALSE	canonical	0	0	junction_6	0.957427107756338	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATTGTTGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	149363170	149394188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_149363253_149369234_149369320_149376758_149376925_149380282_149380428_149384285_149384463_149386581_149386744_149393808
74503	chr7	-	674	5	NIC	ENSMUSG00000003190.13	novel	1075	7	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	66.4115953730973	62	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	44646982	44640645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44640879_44643786_44643874_44645967_44646111_44646301_44646417_44646886
74504	chr5	+	606	1	NIC	ENSMUSG00000039623.14	novel	382	3	NA	NA	8	-1867	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGATCTCCACTCGAGCA	8728	False	NA	NA	False	NA	NA	NA	142449836	142450442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_142449800_142450400
74505	chr12	+	431	2	FSM	ENSMUSG00000044715.8	ENSMUST00000222284.2	1064	2	574	59	2	-59	multi-exon	FALSE	canonical	3	132	junction_1	0	189	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAAGAAATAT	NA	False	NA	NA	False	NA	NA	NA	105651661	105665351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105651718_105664976
74507	chr2	+	1753	1	Genic_Genomic	ENSMUSG00000041966.19	novel	NA	NA	NA	NA	-1610	-22675	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGACTGCTTCCTGGGAC	NA	False	NA	NA	False	NA	NA	NA	70884061	70885814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_70884100_70885800
74508	chr14	+	720	4	NIC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	16	1	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	306.768461366042	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAAGCTTATGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	122419131	122639640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_122419194_122548655_122548843_122608652_122608842_122639358
74509	chr2	-	390	1	Antisense	novelGene_ENSMUSG00000036646.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCACTGTCCGGTGGGTG	5877	False	NA	NA	False	NA	NA	NA	25222562	25222172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_25222200_25222600
74511	chr7	-	540	3	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	-187	-149	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	22	1	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCCGAGGGGAGTCTTCT	8361	False	NA	NA	False	NA	NA	NA	16009883	16008118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16008342_16009204_16009301_16009662
74512	ERCC-00078	-	967	1	Antisense	novelGene_ERCC-00078A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	967	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_ERCC-00078_-_0_1000
74513	chr9	-	827	4	FSM	ENSMUSG00000040433.17	ENSMUST00000143403.2	566	4	-93	-168	45	-30	multi-exon	FALSE	canonical	1	1	junction_1	0	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTGTTTCTATGATAAA	2423	False	NA	NA	False	NA	NA	NA	96634839	96629363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96629572_96630522_96630658_96633354_96633437_96634437
74515	chr14	+	1951	12	ISM	ENSMUSG00000021879.14	ENSMUST00000022433.12	12009	74	12768	167780	12768	-49849	internal_fragment	FALSE	canonical	0	0	junction_3	1.12815214963553	3	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAGACTTTGTATATGTC	NA	False	NA	NA	False	NA	NA	NA	26427196	26445880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_26427250_26427917_26428077_26428281_26428478_26430290_26430480_26431269_26431427_26432132_26432225_26437707_26437887_26439063_26439200_26443242_26443369_26444651_26444787_26445009_26445204_26445545
74516	chr7	+	363	3	NNC	ENSMUSG00000030432.13	novel	772	4	NA	NA	-90	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3324.5	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAATGTTTTGTGCTCAT	3322	False	NA	NA	False	NA	NA	NA	4796501	4797555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4796634_4797089_4797182_4797416
74517	chr18	-	936	2	Intergenic	novelGene_4575	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_1	0	15	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTTAAAAATTCATGGGT	9973	False	NA	NA	False	NA	NA	NA	80226905	80221995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_80222501_80226474
74518	chr8	+	589	4	NIC	ENSMUSG00000038005.16	novel	1191	8	NA	NA	-1	2	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	388.477655585091	87	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTCTTCTAGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	61343483	61360611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_61343571_61357033_61357122_61358581_61358755_61360370
74519	chr16	-	735	1	FSM	ENSMUSG00000086645.3	ENSMUST00000182690.2	1901	1	1162	4	-323	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACACTGTCACATGACTT	NA	False	NA	NA	False	NA	NA	NA	31247432	31246697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31246700_31247400
74522	chr13	+	589	3	FSM	ENSMUSG00000071252.7	ENSMUST00000225992.2	616	3	26	1	23	-1	multi-exon	FALSE	canonical	3	44	junction_1	11	97	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTGAGTGACTTACACTG	NA	False	NA	NA	False	NA	NA	NA	77283695	77332122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_77283750_77322971_77323104_77331719
74523	chr19	-	1030	1	Intergenic	novelGene_1249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGGCTGGTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	37364735	37363705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_37363700_37364700
74524	chr5	-	2200	3	Fusion	ENSMUSG00000085858.2_ENSMUSG00000059325.15	novel	1261	3	NA	NA	-6274	2379	multi-exon	FALSE	canonical	0	0	junction_1	0	2	57	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTTGTGTTGGTACGTG	NA	False	NA	NA	False	NA	NA	NA	77276469	77262277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_77264157_77265397_77265638_77276388
74525	chr11	-	502	2	NNC	ENSMUSG00000048445.7	novel	1164	6	NA	NA	21010	-1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	193	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTCTGTCTTGTCCTAC	4514	False	NA	NA	False	NA	NA	NA	120743487	120717355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120717751_120743380
74526	chr3	-	1095	1	Antisense	novelGene_ENSMUSG00000091512.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGACTTCCCCCGCACCCG	NA	False	NA	NA	False	NA	NA	NA	137625712	137624617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_137624600_137625700
74527	chr10	-	648	1	Genic_Genomic	ENSMUSG00000003346.15	novel	NA	NA	NA	NA	2970	647	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCATTTTTATGTACATT	2373	False	NA	-6	True	NA	NA	NA	80419488	80418840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_80418800_80419500
74528	chr2	+	381	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	0	at_least_one_novel_splicesite	FALSE	canonical	3	337	junction_4	128.141523324799	65	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	NA	False	NA	NA	NA	135488443	135493983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493442_135493766
74530	chr10	-	1266	8	NNC	ENSMUSG00000019774.9	novel	2588	7	NA	NA	76	153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	17.934119801686	47	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGACAGTTGTTTTATGC	NA	False	NA	NA	False	NA	NA	NA	5773834	5763058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768800_5768985_5770024_5770105_5773525_5773668_5773741
74532	chr4	-	960	3	ISM	ENSMUSG00000028778.16	ENSMUST00000164887.3	1251	7	3870	-610	3870	-14	3prime_fragment	FALSE	canonical	0	0	junction_2	1	4	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGGCACTGAATGTTCT	NA	False	NA	NA	False	NA	NA	NA	130027551	130024023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_130024798_130026426_130026549_130027487
74533	chr12	+	787	4	FSM	ENSMUSG00000047022.19	ENSMUST00000153755.8	1856	4	51	1018	-13	1	multi-exon	FALSE	canonical	3	69	junction_1	7.34846922834953	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTCAATCCAATCACAAAAA	NA	False	NA	NA	False	NA	NA	NA	57277263	57354463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144
74534	chr10	+	397	1	Intergenic	novelGene_3519	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAACCCCTTTTACTAC	NA	False	NA	NA	False	NA	NA	NA	97579623	97580020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_97579600_97580000
74535	chr18	+	337	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	143	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48179986_48181394
74537	chr14	+	773	1	ISM	ENSMUSG00000114883.2	ENSMUST00000224991.2	1104	3	18488	0	18488	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTTTCTTGGTATTTTT	NA	False	NA	NA	False	NA	NA	NA	8140986	8141759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_8141000_8141800
74538	chr1	-	1260	4	ISM	ENSMUSG00000032769.6	ENSMUST00000235071.2	3288	26	70	31642	70	-31642	5prime_fragment	FALSE	canonical	1	3	junction_1	1.69967317119759	2	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAATAAAAGCATATGGAA	NA	False	NA	NA	False	NA	NA	NA	14988989	14975371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_14976255_14980953_14981130_14982583_14982744_14988948
74539	chr11	-	162	1	Intergenic	novelGene_2498	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGACCTGGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	108902633	108902471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902500_108902600
74540	chr3	-	1056	1	ISM	ENSMUSG00000013707.4	ENSMUST00000013851.4	1122	2	1782	2	1782	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACAGGGCTCACGGTTTA	NA	False	NA	NA	False	NA	NA	NA	95047889	95046833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95046800_95047900
74543	chr2	+	800	1	ISM	ENSMUSG00000000247.12	ENSMUST00000000253.6	2840	5	18159	16	15116	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTATCGAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	38258929	38259729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_38258900_38259700
74544	chr8	+	1537	2	FSM	ENSMUSG00000054764.10	ENSMUST00000067984.9	1576	2	18	21	18	-21	multi-exon	FALSE	canonical	1	1	junction_1	0	5	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATAGTCAAAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	45522191	45541522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_45522440_45540233
74545	chr5	-	294	1	FSM	ENSMUSG00000072692.8	ENSMUST00000124641.2	294	1	37	-37	37	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAATTAATC	NA	False	NA	NA	False	NA	NA	NA	115241543	115241249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115241200_115241500
74546	ERCC-00074	-	482	1	Antisense	novelGene_ERCC-00074A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	497	15	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_ERCC-00074_-_0_500
74547	chrX	+	2137	11	NNC	ENSMUSG00000040990.18	novel	3914	13	NA	NA	37195	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	7.04343666117613	7	64	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAATAAAAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	158661154	158757136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158661213_158684671_158684780_158696984_158697037_158700231_158700313_158702753_158702914_158726192_158726279_158741208_158741319_158744760_158744894_158749209_158749479_158754857_158754922_158756120
74549	chr1	+	859	5	ISM	ENSMUSG00000050122.20	ENSMUST00000124404.8	1252	7	12995	32	6591	-32	3prime_fragment	FALSE	canonical	2	3	junction_1	9.836157786453	5	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGGAAATAAAGGACGAAAT	NA	False	NA	NA	False	NA	NA	NA	37081379	37102698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_37081471_37084038_37084290_37090797_37090961_37099410_37099581_37102514
74551	chr7	+	1454	11	NNC	ENSMUSG00000030584.15	novel	1574	12	NA	NA	59	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	27.1632104140877	27	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAAATTAATATATAC	5890	False	NA	NA	False	NA	NA	NA	29007501	29016322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29007524_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011124_29012272_29012352_29012506_29012639_29013707_29013828_29015048_29015162_29015668_29015751_29015905
74552	chr10	+	912	9	NNC	ENSMUSG00000069565.13	novel	2081	12	NA	NA	-7	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	348.543307926002	2	16	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAGGGTTTAAAAAACGC	NA	False	NA	NA	False	NA	NA	NA	80100950	80123731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80123549
74553	chr8	+	1663	1	ISM	ENSMUSG00000039478.16	ENSMUST00000136835.2	2488	8	30306	37	27487	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	17	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTATTGCACCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	40837649	40839312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_40837600_40839300
74554	chr1	-	755	1	FSM	ENSMUSG00000099843.2	ENSMUST00000188519.2	1027	1	95	177	95	-177	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCCATGATTGTAAATA	NA	False	NA	NA	False	NA	NA	NA	105917887	105917132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_105917100_105917900
74556	chr19	+	2002	15	Antisense	novelGene_ENSMUSG00000046230.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGACTAGATCTTATAT	NA	False	NA	NA	False	NA	NA	NA	16621136	16642118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_16621194_16623211_16623359_16624956_16625069_16628780_16628891_16630051_16630123_16631206_16631287_16631704_16631850_16632570_16632724_16633222_16633458_16635966_16636098_16637811_16637946_16638360_16638490_16641115_16641261_16641369_16641475_16641870
74557	chr17	+	889	3	NNC	ENSMUSG00000034377.11	novel	8784	14	NA	NA	-10246	-345	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	16.5	2	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATTCTACAAATGCATT	2198	False	NA	NA	False	NA	NA	NA	6272680	6276771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6272724_6274426_6274521_6276019
74558	chr4	+	429	4	Antisense	novelGene_ENSMUSG00000042367.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_3	31.7104959840674	137	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTCTATTTGACTTTAA	9242	False	NA	NA	False	NA	NA	NA	127224003	127232817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127224096_127225680_127225785_127226134_127226258_127232707
74560	chr2	-	654	2	Genic_Genomic	ENSMUSG00000086007.2	novel	506	3	NA	NA	1694	-12946	multi-exon	FALSE	canonical	0	0	junction_1	0	1	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAGTATTTGTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	51326218	51324007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_51324552_51326108
74561	chr10	-	1094	5	Antisense	novelGene_ENSMUSG00000060733.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGATGTCCTGTGCTCAG	NA	False	NA	NA	False	NA	NA	NA	71213249	71197889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_71197913_71199279_71199365_71201837_71201935_71208536_71208709_71212532
74564	chr7	-	698	1	ISM	ENSMUSG00000047037.6	ENSMUST00000052204.6	3183	5	40753	937	40753	-937	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGTATTGAACTTGA	NA	False	NA	NA	False	NA	NA	NA	55628949	55628251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_55628300_55628900
74565	chr15	+	1525	3	Intergenic	novelGene_3345	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCAGGATTCTCGCTGTG	NA	False	NA	NA	False	NA	NA	NA	87786878	87794743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_87787129_87791516_87791647_87793598
74566	chr10	+	638	4	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	26.9608770051883	143	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACCAACTCCCCAACTGT	NA	False	NA	NA	False	NA	NA	NA	61670316	61709992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_61670501_61698165_61698280_61709460_61709561_61709752
74569	chrX	-	700	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	3	-253	3	253	multi-exon	FALSE	canonical	3	182	junction_2	19	690	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATAAACATGGTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	135858771	135855760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135856232_135857483_135857589_135858647
74570	chr2	+	1316	1	ISM	ENSMUSG00000027102.5	ENSMUST00000019749.4	2634	2	1626	87	1379	-87	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGCCTCACAGATTGGAA	NA	False	NA	NA	False	NA	NA	NA	74536874	74538190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_74536900_74538200
74571	chr10	+	631	6	NNC	ENSMUSG00000025400.12	novel	514	3	NA	NA	34	0	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_5	3.96988664825584	172	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACTGATGCAATAGGCTG	NA	False	NA	NA	False	NA	NA	NA	127563749	127567637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127563897_127564039_127564146_127564315_127564346_127564982_127565037_127565344_127565419_127567417
74572	chr8	-	1150	6	ISM	ENSMUSG00000038102.16	ENSMUST00000125065.8	4646	29	2	34524	-1	4	5prime_fragment	FALSE	canonical	3	108	junction_5	19.61224107541	31	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATTTTACCTTTAAAGT	4053	False	NA	NA	False	NA	NA	NA	47986503	47977687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
74573	chr5	-	1000	2	ISM	ENSMUSG00000079173.12	ENSMUST00000130056.2	2114	8	12861	12	12861	-12	3prime_fragment	FALSE	canonical	1	3	junction_1	0	12	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAATTGAAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	137436024	137434142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_137435100_137435981
74576	chr2	+	893	5	Antisense	novelGene_ENSMUSG00000027613.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGTCCCAACAGCTCAC	NA	False	NA	NA	False	NA	NA	NA	155661933	155668545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_155662026_155664745_155664938_155665110_155665286_155665785_155665956_155668281
74579	chr14	-	835	4	Intergenic	novelGene_598	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCCGTTTCCGGCCCATC	NA	False	NA	NA	False	NA	NA	NA	65348737	65335653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_65335829_65338152_65338222_65338371_65338497_65348271
74584	chr7	+	1036	5	FSM	ENSMUSG00000003379.8	ENSMUST00000003469.8	1457	5	78	343	78	-343	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	21	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCCCTTGGCAGGAGTC	2976	False	NA	NA	False	NA	NA	NA	24596883	24601279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24597014_24598519_24598814_24599011_24599131_24600657_24600727_24600855
74585	chr2	-	895	1	ISM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	29132	8	22432	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCAAACAAGGTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	157959224	157958329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_157958300_157959200
74587	chr11	-	931	1	Intergenic	novelGene_2479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCCCATCTCCTCTAAG	1951	False	NA	NA	False	NA	NA	NA	100802028	100801097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_100801100_100802000
74588	chr1	+	840	7	NNC	ENSMUSG00000033793.13	novel	1811	13	NA	NA	7	-497	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	186.553834946734	17	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAATTAAAAATAAATT	NA	False	NA	NA	False	NA	NA	NA	5153393	5169503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5169330
74589	chrX	+	696	3	FSM	ENSMUSG00000086316.9	ENSMUST00000185492.7	1346	3	26	624	9	32	multi-exon	FALSE	canonical	3	65	junction_2	49	79	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTAGAGCTATACGATTA	NA	False	NA	NA	False	NA	NA	NA	152506631	152524292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_152506934_152508700_152508838_152524035
74590	chr14	+	853	2	FSM	ENSMUSG00000022215.7	ENSMUST00000022826.7	971	2	103	15	103	-15	multi-exon	FALSE	canonical	3	7	junction_1	0	19	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACCAGGCCTGGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	55813176	55814396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55813405_55813771
74591	chr7	-	1897	2	Antisense	novelGene_ENSMUSG00000025726.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTTCGCCATAGGCCT	2280	False	NA	NA	False	NA	NA	NA	80801043	80797258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_80797289_80799176
74593	chr3	+	1211	2	ISM	ENSMUSG00000038403.11	ENSMUST00000049208.11	2028	4	2335	12	2335	-12	3prime_fragment	FALSE	canonical	1	2	junction_1	0	7	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGTTCTCCATCCTGTC	NA	False	NA	NA	False	NA	NA	NA	96434822	96436514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96434899_96435379
74594	chr17	+	449	2	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-35	-19630	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	769	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTGTTTTTGTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	17284339	17290260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284469_17289940
74596	chr7	+	735	1	NIC	ENSMUSG00000005566.15	novel	851	7	NA	NA	-331	-355	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGCAAGGGTATTAACCAA	NA	False	NA	NA	False	NA	NA	NA	12761339	12762074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_12761300_12762100
74597	chr12	-	466	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	21	39	21	-39	multi-exon	FALSE	canonical	3	5332	junction_1	0	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAATGACCTGCTAGAG	NA	False	NA	NA	False	NA	NA	NA	69230836	69229553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69229940_69230756
74598	chr16	-	1213	1	Intergenic	novelGene_3580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTCAAGGCCAGCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	8609778	8608565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_8608600_8609800
74602	chr8	+	1132	1	Antisense	novelGene_ENSMUSG00000031586.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAATGACAATACAAAA	NA	False	NA	NA	False	NA	NA	NA	34271570	34272702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_34271600_34272700
74604	chr8	+	819	5	NNC	ENSMUSG00000031807.11	novel	1062	5	NA	NA	327	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	261.019515553914	125	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72045261	72048913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72045517_72046727_72046836_72047312_72047415_72047704_72047846_72048700
74606	chr11	-	654	4	FSM	ENSMUSG00000035575.12	ENSMUST00000146127.2	559	4	-24	-71	-1	71	multi-exon	FALSE	canonical	3	451	junction_1	32.1074584619974	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTGGGCATGGTGATA	NA	False	NA	NA	False	NA	NA	NA	79853217	79849351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_79849705_79849934_79849977_79851572_79851658_79853043
74607	SIRV3	+	414	3	FSM	SIRV3A	SIRV305	436	3	-1	23	-1	-23	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTATGTGGTAGATTCATA	NA	False	NA	NA	False	NA	NA	NA	4002	6695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_4081_4568_4780_6570
74608	chr11	-	414	2	FSM	ENSMUSG00000093989.2	ENSMUST00000141880.2	465	2	52	-1	52	1	multi-exon	FALSE	canonical	3	726	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTTGCTGTCTGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	70129832	70128951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70129297_70129763
74609	chr14	+	1154	1	Antisense	novelGene_ENSMUSG00000041703.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGGAACAGTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	122702402	122703556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_122702400_122703600
74610	chr15	+	776	1	Intergenic	novelGene_3330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGGACTGCCTCTTTCGA	NA	False	NA	NA	False	NA	NA	NA	79877569	79878345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_79877600_79878300
74613	chr7	+	1765	10	ISM	ENSMUSG00000030683.12	ENSMUST00000106333.8	3595	18	11160	-3	-5854	3	3prime_fragment	FALSE	canonical	0	0	junction_2	1.59474445493415	7	17	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTAACTGAGCTGGTGAG	2108	False	NA	NA	False	NA	NA	NA	126561060	126569771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126561110_126561524_126561664_126562436_126562634_126562734_126562930_126565896_126566089_126566185_126566378_126566878_126566918_126567098_126567217_126567331_126567429_126569224
74614	chr18	+	925	7	NNC	ENSMUSG00000024317.16	novel	2271	7	NA	NA	2	-1083	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	221.305532892625	1	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCCACCCTAATACCATT	NA	False	NA	NA	False	NA	NA	NA	21135049	21159359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21135231_21141781_21141948_21143733_21143850_21150871_21150933_21153944_21154061_21157465_21157543_21159151
74616	chr7	+	666	2	FSM	ENSMUSG00000085105.3	ENSMUST00000127010.2	4175	2	25	3484	25	1171	multi-exon	FALSE	canonical	3	45	junction_1	0	93	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATAAAGCCAAGTTATT	NA	False	NA	NA	False	NA	NA	NA	33933826	33936148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_33933921_33935576
74617	chr3	-	1476	1	FSM	ENSMUSG00000105201.2	ENSMUST00000198192.2	2470	1	-175	1169	-175	-1169	mono-exon	FALSE	NA	NA	NA	NA	NA	6	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCCCGATTTTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	157742221	157740745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_157740700_157742200
74620	chr4	+	563	1	ISM	ENSMUSG00000024793.15	ENSMUST00000025706.10	1661	10	3602	21	1565	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTAAGAAAAGCAGCTGCTT	3975	False	NA	NA	False	NA	NA	NA	152203992	152204555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152204000_152204600
74621	chr18	+	544	1	Intergenic	novelGene_4543	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGTTGCTTTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	47855396	47855940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_47855400_47855900
74623	chr5	+	1228	4	Antisense	novelGene_ENSMUSG00000034310.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_2	1.24721912892465	17	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCTGCCAAGAAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	127921599	127951962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_127921656_127922359_127922500_127930006_127930122_127951045
74624	chr8	-	873	1	Antisense	novelGene_ENSMUSG00000054400.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAAGTCCGGGCGCGCCTG	NA	False	NA	NA	False	NA	NA	NA	104978405	104977532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_104977500_104978400
74625	chr5	+	670	4	FSM	ENSMUSG00000072754.10	ENSMUST00000100924.5	692	4	16	6	16	-6	multi-exon	FALSE	canonical	3	17	junction_1	4.71404520791032	93	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGACCTTGTCCAGTCCA	NA	False	NA	NA	False	NA	NA	NA	110501977	110503954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110502160_110502356_110502483_110502590_110502717_110503718
74626	chr3	-	524	5	NNC	ENSMUSG00000028062.16	novel	668	4	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1163.36634384875	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	1078	False	NA	NA	False	NA	NA	NA	88460230	88457125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88457193_88457235_88457312_88458002_88458093_88459661_88459825_88460102
74628	chr7	-	757	5	ISM	ENSMUSG00000003872.10	ENSMUST00000003971.10	735	6	254	0	-14	0	3prime_fragment	FALSE	canonical	2	8	junction_1	2.06155281280883	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	8196	False	NA	NA	False	NA	NA	NA	45019753	45017314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45017423_45017727_45017892_45018564_45018775_45019338_45019411_45019550
74629	chr3	+	1035	1	ISM	ENSMUSG00000056900.14	ENSMUST00000072312.12	7580	21	119490	1	22033	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGGTCCCTTTATGGCT	NA	False	NA	NA	False	NA	NA	NA	32991184	32992219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_32991200_32992200
74630	chr12	+	1382	1	Intergenic	novelGene_4459	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGACTTGCCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	104634426	104635808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_104634400_104635800
74631	chr6	-	1219	1	ISM	ENSMUSG00000030306.15	ENSMUST00000060095.15	8383	20	210712	29	207958	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTATATAAAACATGGTA	NA	False	NA	NA	False	NA	NA	NA	148135175	148133956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_148134000_148135200
74632	chr3	+	840	2	ISM	ENSMUSG00000045662.18	ENSMUST00000196533.2	1491	6	17375	-27	17375	27	3prime_fragment	FALSE	canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATTTTGGTGTTAGAA	9864	False	NA	NA	False	NA	NA	NA	108866001	108868031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_108866036_108867225
74634	chr1	-	694	4	Antisense	novelGene_ENSMUSG00000040782.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	6.59966329107444	25	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGAGTGTCCCCATTC	5522	False	NA	NA	False	NA	NA	NA	159163165	159158693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_159158986_159159751_159159926_159162738_159162810_159163008
74635	chr2	-	1759	9	FSM	ENSMUSG00000027107.4	ENSMUST00000028515.4	4386	9	41	2586	41	-2586	multi-exon	FALSE	canonical	0	0	junction_4	0.82915619758885	4	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGAGTGATCCGCCTA	NA	False	NA	NA	False	NA	NA	NA	73410641	73396144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73396652_73397045_73397286_73398435_73398660_73400750_73400989_73401756_73401953_73403603_73403714_73404664_73404710_73404829_73404976_73410588
74636	chr18	-	964	1	Antisense	novelGene_ENSMUSG00000024423.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTTCAAAAACAGCAGTAAT	2141	False	NA	NA	False	NA	NA	NA	13120345	13119381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_13119400_13120300
74638	chr2	-	851	1	Intergenic	novelGene_2580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCAGCCCCCAAATCAA	NA	False	NA	NA	False	NA	NA	NA	24745832	24744981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_24745000_24745800
74639	chr8	-	331	1	Intergenic	novelGene_1656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGTTATACGTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	70354186	70353855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_70353900_70354200
74640	chr2	+	1390	1	Intergenic	novelGene_2836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTATATGTTCAAATAC	NA	False	NA	NA	False	NA	NA	NA	174872475	174873865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_174872500_174873900
74641	chr5	-	603	4	Antisense	novelGene_ENSMUSG00000004951.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	425	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGCCGGACTGGAGCCCC	NA	False	NA	NA	False	NA	NA	NA	135918412	135916859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_135916933_135917139_135917286_135917900_135917967_135918094
74642	chr2	-	523	1	Antisense	novelGene_ENSMUSG00000060257.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGCATTAAATACTAC	NA	False	NA	NA	False	NA	NA	NA	151935028	151934505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_151934500_151935000
74643	chr11	+	552	6	NNC	ENSMUSG00000069744.8	novel	766	6	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1622.55963218613	22	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCATGCCTGCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	97594259	97604320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97594317_97594613_97594799_97597623_97597706_97602074_97602106_97603262_97603358_97604218
74644	chr11	+	514	1	ISM	ENSMUSG00000034587.9	ENSMUST00000146456.2	1675	2	4291	1062	4283	177	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTGATGACTCCTCTAAA	NA	False	NA	NA	False	NA	NA	NA	3406762	3407276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_3406800_3407300
74645	chrX	-	702	1	NIC	ENSMUSG00000067369.13	novel	4099	12	NA	NA	13714	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACGCTTCTGTTGTCACT	NA	False	NA	NA	False	NA	NA	NA	133163955	133163253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_133163300_133164000
74646	chr16	+	315	1	Genic_Genomic	ENSMUSG00000025612.6	novel	NA	NA	NA	NA	34337	309	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCAGACATTGCCACTG	NA	False	NA	16	True	NA	NA	NA	87530228	87530543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_87530200_87530500
74647	chr13	-	2146	1	Intergenic	novelGene_1510	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	62	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGGCGCACATAAAATATATA	NA	False	NA	NA	False	NA	NA	NA	97610895	97608749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_97608700_97610900
74648	chr5	+	744	6	NNC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-5	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	45.9886942628294	10	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGGCTTAGACATGATA	3424	False	NA	NA	False	NA	NA	NA	134961233	134966116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134965987
74649	chr3	+	522	2	ISM	ENSMUSG00000039887.12	ENSMUST00000198341.2	831	3	-138	21768	-21	-21304	5prime_fragment	FALSE	canonical	3	72	junction_1	0	29	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAAATATAAGAATTTCT	NA	False	NA	NA	False	NA	NA	NA	121085400	121092542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_121085633_121092252
74650	chr7	-	923	5	ISM	ENSMUSG00000053158.11	ENSMUST00000206728.2	2707	18	7398	-12	-391	2	3prime_fragment	FALSE	canonical	2	10	junction_1	2.77263412660235	56	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGATATTGACATGTGTG	NA	False	NA	NA	False	NA	NA	NA	80029769	80027508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565
74651	chr11	-	864	4	NNC	ENSMUSG00000042549.11	novel	1291	2	NA	NA	-2	5153	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	3.29983164553722	40	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCCCCAACCATAAAATTA	NA	False	NA	NA	False	NA	NA	NA	60822695	60806589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60806785_60807034_60807229_60807774_60807946_60822391
74653	chr5	+	1188	8	ISM	ENSMUSG00000010825.18	ENSMUST00000120825.2	3865	21	12482	3191	7113	-2507	internal_fragment	TRUE	canonical	1	1	junction_1	1.29362644830535	2	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGGTTTGCTGTGGTCAT	4424	False	NA	NA	False	NA	NA	NA	143368328	143374716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_143368686_143371761_143371850_143372475_143372554_143373072_143373270_143373576_143373733_143373863_143373951_143374403_143374534_143374621
74654	chr9	+	1750	10	NNC	ENSMUSG00000032373.16	novel	3639	10	NA	NA	27	-4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	5.02831488843767	4	30	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATCAGACTGATTTTTTC	NA	False	NA	NA	False	NA	NA	NA	66621038	66674120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_66621216_66624841_66624863_66653751_66653932_66654857_66655004_66658211_66658308_66659224_66659289_66659568_66659727_66660976_66661104_66670528_66670617_66673427
74655	chr7	-	711	5	NIC	ENSMUSG00000030706.18	novel	4285	8	NA	NA	-4	112	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	218.635970279366	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGTGTGTGTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	100232286	100198331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100232196
74657	chr3	+	179	1	Intergenic	novelGene_3182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTCCCTGCTCCTTA	NA	False	NA	NA	False	NA	NA	NA	121410656	121410835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_121410700_121410800
74660	chr7	-	642	1	ISM	ENSMUSG00000004473.11	ENSMUST00000004587.11	2978	4	2007	1567	2007	-1567	mono-exon	FALSE	NA	NA	NA	NA	NA	78	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGAAGTTGTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	43954319	43953677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_43953700_43954300
74662	chr11	-	1237	1	Intergenic	novelGene_2536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGCCAGCCTTTTCTGC	NA	False	NA	NA	False	NA	NA	NA	117720395	117719158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_117719200_117720400
74663	chr17	+	479	4	NNC	ENSMUSG00000023939.8	novel	531	4	NA	NA	43	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	465.998569382639	16	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATACTGTCTGAGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	45997325	46009418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45997354_46006407_46006499_46008973_46009034_46009118
74665	chr9	-	847	6	FSM	ENSMUSG00000066456.15	ENSMUST00000161796.9	862	6	15	0	15	0	multi-exon	FALSE	canonical	3	36	junction_1	6.24179461373089	120	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	83028643	82992000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_82992483_82993086_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
74667	chr4	-	1387	1	FSM	ENSMUSG00000101493.2	ENSMUST00000189334.2	1117	1	-279	9	-279	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	11	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTTATACTTGTGCTA	2178	False	NA	NA	False	NA	NA	NA	137115972	137114585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137114600_137116000
74668	chr5	+	701	1	NIC	ENSMUSG00000023284.16	novel	937	6	NA	NA	34	-16333	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTTGCTGGGAATTGA	2242	False	NA	NA	False	NA	NA	NA	110258250	110258951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_110258200_110259000
74669	ERCC-00074	+	464	2	Genic_Genomic	ERCC-00074A	novel	506	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_ERCC-00074_+_278_319
74670	chr7	-	943	3	Fusion	ENSMUSG00000038782.8_ENSMUSG00000062073.7	novel	1078	4	NA	NA	24	-1	multi-exon	FALSE	canonical	1	1	junction_1	0.5	12	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTCTCAGTGTCTGACT	NA	False	NA	NA	False	NA	NA	NA	43896095	43870441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_43871149_43871897_43872045_43896006
74671	chr13	+	513	1	FSM	ENSMUSG00000061615.3	ENSMUST00000078369.3	473	1	-48	8	-48	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	497	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATCTTTCCATAAAATGA	352	False	NA	NA	False	NA	NA	NA	23935060	23935573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_23935100_23935600
74672	chr5	-	918	4	Antisense	novelGene_ENSMUSG00000029178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	158	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGGGAGCCGGCGATCC	NA	False	NA	NA	False	NA	NA	NA	64980424	64969711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_64969845_64974075_64974173_64979215_64979699_64980219
74673	chr8	+	645	4	FSM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	15	7	-6	-3	multi-exon	FALSE	canonical	3	233	junction_3	21.1397466609439	1218	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATATATTTTCTGCAGA	4807	False	NA	NA	False	NA	NA	NA	104977507	104990072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104989902
74675	chr13	-	614	5	Intergenic	novelGene_1443	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	7.1239034243875	18	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAATGTCACCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	66711816	66696268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66696380_66700460_66700522_66700722_66700807_66702281_66702494_66711670
74677	chr12	+	1581	1	Antisense	novelGene_ENSMUSG00000002996.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTTTTAAACATCTGCAA	NA	False	NA	NA	False	NA	NA	NA	31982101	31983682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_31982100_31983700
74678	chr18	-	1067	1	Intergenic	novelGene_4535	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACATTTCCCCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	36417823	36416756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_36416800_36417800
74679	chr10	+	999	1	Antisense	novelGene_ENSMUSG00000019795.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTCCGTTTTTTTCCTA	NA	False	NA	NA	False	NA	NA	NA	7539120	7540119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_7539100_7540100
74680	chr2	+	817	6	NNC	ENSMUSG00000018326.10	novel	3013	6	NA	NA	-212	1439	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	734.308654449885	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGTCTGTTGTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	163837210	163858642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_163837286_163853521_163853825_163855928_163856054_163857150_163857315_163858022_163858119_163858588
74682	chr2	+	717	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	-46	-4	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_1	9.8770215933527	116	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGCTATCAAGACTCGGT	NA	False	NA	NA	False	NA	NA	NA	71549714	71561306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71549853_71553630_71553841_71560693_71560778_71561021
74683	chr1	+	704	5	FSM	ENSMUSG00000026418.17	ENSMUST00000129217.2	721	5	19	-2	19	2	multi-exon	FALSE	canonical	3	26	junction_1	28.0624304008046	51	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTGGTCCTGGAACTGG	3590	False	NA	NA	False	NA	NA	NA	135732813	135737649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363
74684	chr10	+	1362	2	Antisense	novelGene_ENSMUSG00000038151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	3	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGATCCACCAGCGTCT	NA	False	NA	NA	False	NA	NA	NA	44317274	44319978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_44317329_44318670
74685	chr4	+	736	1	NIC	ENSMUSG00000065990.13	novel	661	3	NA	NA	26	-35	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGTCGGGCTGCCTCCC	NA	False	NA	NA	False	NA	NA	NA	155916151	155916887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155916200_155916900
74687	chr6	-	315	1	NIC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-23620	-27006	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAATTTGCCTCCTGATT	NA	False	NA	NA	False	NA	NA	NA	49111654	49111339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_49111300_49111700
74688	chr4	+	1271	1	ISM	ENSMUSG00000045672.16	ENSMUST00000036300.13	7612	61	118273	13	2715	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	5	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGCAATGGAAAGACGAGT	NA	False	NA	NA	False	NA	NA	NA	63251944	63253215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_63251900_63253200
74689	chr9	+	1195	5	Antisense	novelGene_ENSMUSG00000041523.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCCGCGACTGAAGGACA	NA	False	NA	NA	False	NA	NA	NA	44363900	44366274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44364406_44364778_44364851_44365091_44365231_44365358_44365493_44365929
74690	chr11	+	583	2	FSM	ENSMUSG00000090266.11	ENSMUST00000128784.2	585	2	-17	19	-11	-19	multi-exon	FALSE	canonical	3	40	junction_1	0	177	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTTCTTGTTCTTTTTT	8934	False	NA	NA	False	NA	NA	NA	116734369	116736940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_116734601_116736588
74691	chr11	+	1446	11	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	13745	128046	13745	-58954	internal_fragment	FALSE	canonical	3	18	junction_5	6.11882341631134	3	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATTGGAAACAAGAAAGGT	1044	False	NA	NA	False	NA	NA	NA	23270660	23311698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_23270749_23283438_23283860_23293319_23293371_23293510_23293661_23295149_23295218_23299150_23299344_23301591_23301654_23304844_23304927_23305005_23305099_23311278_23311405_23311586
74692	chr9	-	761	1	FSM	ENSMUSG00000111334.2	ENSMUST00000217551.2	2828	1	2068	-1	2068	1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTGCATGGTGGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	43650924	43650163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_43650200_43650900
74693	chr6	+	1714	1	Intergenic	novelGene_4266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGAAGGGAAACAAATATCA	2776	False	NA	NA	False	NA	NA	NA	142970560	142972274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_142970600_142972300
74695	chr8	-	617	1	ISM	ENSMUSG00000058301.9	ENSMUST00000215817.2	4518	24	21038	32	21038	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	234	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTTTGTCACCAATAAAA	7598	False	NA	NA	False	NA	NA	NA	70784823	70784206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_70784200_70784800
74696	chr8	-	1224	3	Intergenic	novelGene_1581	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTAAACGGTCTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	18645110	18613904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_18614965_18619658_18619757_18645044
74697	chr16	-	233	1	Intergenic	novelGene_3671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAATTGGCCAGCAGGGAT	NA	False	NA	NA	False	NA	NA	NA	56941992	56941759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_56941800_56942000
74698	chr5	+	1568	10	ISM	ENSMUSG00000038011.16	ENSMUST00000141137.7	13862	78	50168	42575	-11300	4347	internal_fragment	FALSE	canonical	1	1	junction_3	2.98142396999972	1	46	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTAAGAACCTGAAATACC	NA	False	NA	NA	False	NA	NA	NA	124852316	124868792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_124852593_124854222_124854358_124854880_124855034_124856147_124856337_124859331_124859479_124860891_124861084_124862211_124862331_124864380_124864540_124866825_124866962_124868730
74699	chr19	+	784	2	NNC	ENSMUSG00000118038.2	novel	618	2	NA	NA	-53	-16	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	85	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAATAAAAGTAACAAAA	NA	False	NA	NA	False	NA	NA	NA	29044693	29046887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_29044983_29046392
74701	chr15	+	686	2	ISM	ENSMUSG00000045631.11	ENSMUST00000230901.2	931	3	1438	5	1438	-5	3prime_fragment	FALSE	canonical	2	3	junction_1	0	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGATAAAGAACATTTTT	NA	False	NA	NA	False	NA	NA	NA	100180159	100183543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_100180309_100183006
74702	chr2	-	480	3	ISM	ENSMUSG00000027364.15	ENSMUST00000151140.2	980	4	2996	211	2976	-211	3prime_fragment	FALSE	canonical	3	8	junction_2	2	3	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGGAGCCCCCAGCTCC	NA	False	NA	NA	False	NA	NA	NA	126622382	126619819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_126620029_126621850_126622047_126622307
74703	chr11	+	647	5	NNC	ENSMUSG00000018858.16	novel	666	5	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	447.722779742108	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCACAGGAGCCTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	115294596	115301735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115294659_115300305_115300366_115300885_115300969_115301057_115301228_115301463
74704	chr7	-	478	5	Fusion	ENSMUSG00000010751.16_ENSMUSG00000037613.17	novel	4170	6	NA	NA	4318	921	multi-exon	FALSE	non_canonical	0	0	junction_2	73.3450748176045	1	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTAGCTTCCTTTTAT	7426	False	NA	NA	False	NA	NA	NA	143235290	143192073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_143192174_143193638_143193713_143194519_143194601_143197012_143197142_143235196
74705	chr1	+	559	2	ISM	ENSMUSG00000039323.19	ENSMUST00000155703.2	906	3	922	-324	922	-2	3prime_fragment	FALSE	canonical	3	3737	junction_1	0	368	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTGTGTCTTACTTGAG	NA	False	NA	NA	False	NA	NA	NA	72888779	72891631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_72888864_72891156
74707	chr6	+	1370	9	ISM	ENSMUSG00000004633.18	ENSMUST00000046856.14	2418	13	179048	241	-46237	89	3prime_fragment	FALSE	canonical	2	10	junction_2	3.52668399491647	4	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAACTTATTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54195605	54277465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_54195623_54197401_54197688_54250060_54250139_54263078_54263164_54267251_54267426_54270022_54270101_54272768_54272907_54275029_54275136_54277057
74709	chr9	-	947	5	ISM	ENSMUSG00000032366.16	ENSMUST00000113685.10	1208	10	16712	92	324	5	3prime_fragment	FALSE	canonical	3	173	junction_1	171.833313126413	3	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTACGCTATTCCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	66939783	66935265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232
74711	chr11	-	854	5	NNC	ENSMUSG00000086646.8	novel	937	5	NA	NA	-27	11432	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	9.17877987534291	1	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATGGAGTCATGAGGT	NA	False	NA	NA	False	NA	NA	NA	51110380	51069227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51069293_51080756_51081139_51089402_51089544_51104871_51105042_51110284
74712	chr5	-	731	2	NNC	ENSMUSG00000058153.16	novel	4998	15	NA	NA	52803	295	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	0	24	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTCTAAAAGGTCTTTAC	7725	False	NA	NA	False	NA	NA	NA	112570190	112569383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_112569905_112569980
74714	chr10	-	267	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	327	2	327	1	multi-exon	FALSE	canonical	3	15147	junction_1	3128	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATCGGAGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	128461966	128460404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128460506_128461075_128461207_128461931
74716	chr9	+	869	1	Intergenic	novelGene_1018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40101547	40102416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_40101500_40102400
74719	chr17	-	674	2	ISM	ENSMUSG00000073380.3	ENSMUST00000097303.3	1056	3	2323	17	2303	-17	3prime_fragment	FALSE	canonical	3	9	junction_1	0	27	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGCTTATTGTAACTC	5033	False	NA	NA	False	NA	NA	NA	56604963	56601127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_56601665_56604826
74720	chr16	-	690	3	NNC	ENSMUSG00000035699.9	novel	2618	9	NA	NA	-59	-6134	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	20	14	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTGTTTTGAAAAGATCCA	NA	False	NA	NA	False	NA	NA	NA	32306580	32301538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_32301856_32304952_32305048_32306302
74722	chr5	-	771	5	ISM	ENSMUSG00000037913.13	ENSMUST00000203664.2	1012	8	-11	17935	-11	-171	5prime_fragment	FALSE	canonical	0	0	junction_2	1.29903810567666	4	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAAGCTGAGCACTTTG	NA	False	NA	NA	False	NA	NA	NA	65248983	65229623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_65229669_65231093_65231214_65232905_65233167_65237264_65237535_65248908
74723	chr4	-	244	2	Intergenic	novelGene_1913	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGATGCCCTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	106715711	106715285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_106715439_106715620
74724	chr17	-	931	1	NIC	ENSMUSG00000023935.11	novel	1744	6	NA	NA	17463	-1568	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACACACACACACACACACA	NA	False	NA	NA	False	NA	NA	NA	45768289	45767358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45767400_45768300
74726	chr16	-	572	5	Antisense	novelGene_ENSMUSG00000075229.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTCCGCTTTCCAAGGC	NA	False	NA	NA	False	NA	NA	NA	35912378	35892688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_35892752_35903059_35903187_35905386_35905532_35910268_35910329_35912201
74727	chr7	+	601	5	NNC	ENSMUSG00000030868.7	novel	1532	6	NA	NA	-2	-6360	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	149.087851617763	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGATTTCATTTGGCAGC	NA	False	NA	NA	False	NA	NA	NA	121732274	121741444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121741273
74728	chr17	+	840	2	Antisense	novelGene_ENSMUSG00000035051.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	20	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTTTTCAGAGGTGCGTT	NA	False	NA	NA	False	NA	NA	NA	80540175	80549882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_80540468_80549334
74729	chr18	-	1297	1	Intergenic	novelGene_4551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTATAATGAATGCATTAA	NA	False	NA	NA	False	NA	NA	NA	61707825	61706528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_61706500_61707800
74730	chr9	+	797	1	FSM	ENSMUSG00000065579.3	ENSMUST00000083645.3	85	1	-284	-428	-284	428	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAATTTTGCTTTGTTTCG	9202	False	NA	NA	False	NA	NA	NA	108445691	108446488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108445700_108446500
74731	chr12	+	363	1	Genic_Genomic	ENSMUSG00000021255.18	novel	NA	NA	NA	NA	16860	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCATGCGTTGTCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	86568042	86568405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_86568000_86568400
74733	chr13	+	322	1	ISM	ENSMUSG00000097346.2	ENSMUST00000180396.2	1073	3	9062	470	9062	-470	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATGGCGAAGGCTATTT	NA	False	NA	NA	False	NA	NA	NA	97896681	97897003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_97896700_97897000
74734	chr3	+	230	3	FSM	ENSMUSG00000042747.13	ENSMUST00000126691.2	834	3	510	94	42	-94	multi-exon	FALSE	canonical	3	1428	junction_1	205	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCTTCCAAGCAAAAATCT	7633	False	NA	NA	False	NA	NA	NA	89153782	89154406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89153823_89154084_89154240_89154371
74735	chr4	+	843	6	FSM	ENSMUSG00000086587.8	ENSMUST00000136992.8	876	6	28	5	13	-5	multi-exon	FALSE	canonical	3	31	junction_5	12.687001221723	52	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTATATATGGTACAGAA	28	True	NA	NA	False	NA	NA	NA	14930688	14953025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_14930771_14936440_14936540_14938483_14938558_14942199_14942276_14947438_14947546_14952620
74736	chr16	+	456	2	FSM	ENSMUSG00000097537.3	ENSMUST00000181526.3	2942	2	18	2468	18	-287	multi-exon	FALSE	canonical	1	6	junction_1	0	52	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGAACTATCTTCAATGC	9717	False	NA	NA	False	NA	NA	NA	11021247	11041192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_11021612_11041100
74737	chr7	+	636	2	NNC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	-10	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	65	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGGCTCCGCATATGT	NA	False	NA	NA	False	NA	NA	NA	24206513	24215090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24206761_24214701
74738	chr15	-	769	10	FSM	ENSMUSG00000022487.15	ENSMUST00000141364.8	700	10	-13	-56	-13	0	multi-exon	FALSE	canonical	3	29	junction_9	37.8499310957182	176	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAAGTACTTTTTTTTT	8440	False	NA	NA	False	NA	NA	NA	103338819	103310884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603_103338685_103338782
74739	chr10	+	1641	1	Intergenic	novelGene_3530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTGAAGAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	115041836	115043477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_115041800_115043500
74740	chr8	+	1033	9	NNC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	-4	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.357558422953	1	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCTGTGATTTAAAAAGTA	8872	False	NA	NA	False	NA	NA	NA	46428576	46449900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_46428630_46432251_46432333_46433351_46433530_46433609_46433677_46444784_46444950_46445144_46445274_46447051_46447125_46448574_46448700_46449738
74741	chr18	-	446	2	Intergenic	novelGene_4540	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	69	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTTGAATTTTACCATG	NA	False	NA	NA	False	NA	NA	NA	45692412	45691139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_45691359_45692185
74742	chr11	+	445	4	NNC	ENSMUSG00000018286.7	novel	798	6	NA	NA	292	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2974.31923116684	1	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGTTTCTGTGTGAAGGT	NA	False	NA	NA	False	NA	NA	NA	70417227	70418476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70417252_70417369_70417500_70418004_70418116_70418296
74744	chr17	+	1214	3	NNC	ENSMUSG00000036368.9	novel	2118	11	NA	NA	231	-3040	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	3.5	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACCTGAATGCTTTTCTT	3811	False	NA	NA	False	NA	NA	NA	79922721	79933070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79922798_79928734_79929202_79932399
74745	chr16	+	346	2	ISM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	79549	2665	53362	-2665	3prime_fragment	FALSE	canonical	3	1485	junction_1	0	8	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCAGTGTCACACAGGC	248	False	NA	NA	False	NA	NA	NA	34922346	34926882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_34922495_34926684
74746	chr9	+	1690	1	Intergenic	novelGene_1091	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGATGTGTATCCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	62252340	62254030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_62252300_62254000
74749	chr11	+	886	5	ISM	ENSMUSG00000017204.5	ENSMUST00000017348.3	2726	12	7905	1053	7905	-1053	3prime_fragment	FALSE	canonical	1	1	junction_1	0.707106781186548	31	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGAGTCACTTCATT	NA	False	NA	NA	False	NA	NA	NA	98563081	98567481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98563142_98563801_98563957_98564431_98564547_98566698_98566773_98566999
74750	chr13	+	1687	1	Intergenic	novelGene_1537	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTAGCAGCTGGGTGTC	2746	False	NA	NA	False	NA	NA	NA	111690515	111692202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_111690500_111692200
74752	chrX	-	416	3	FSM	ENSMUSG00000081443.3	ENSMUST00000122154.3	337	3	-76	-3	-76	3	multi-exon	FALSE	canonical	3	77	junction_2	7	451	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTTTGACTGTGTGAAA	3551	False	NA	NA	False	NA	NA	NA	101730654	101729894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101730044_101730198_101730354_101730542
74753	chr8	+	942	1	ISM	ENSMUSG00000109582.2	ENSMUST00000211062.2	1087	2	1495	6	1495	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTACCCACATGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	12554393	12555335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_12554400_12555300
74754	chr5	-	646	4	ISM	ENSMUSG00000043036.15	ENSMUST00000128101.9	1930	12	18807	7	-2083	-7	3prime_fragment	FALSE	canonical	0	0	junction_1	3.29983164553722	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGATCCTAGGGCCTTT	2323	False	NA	NA	False	NA	NA	NA	122251259	122246124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_122246311_122247234_122247439_122248922_122249116_122251196
74755	chr3	+	619	5	NNC	ENSMUSG00000015749.13	novel	878	5	NA	NA	-14	25	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_1	706.042270335141	1	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAATTCTCTAGCACTGT	NA	False	NA	NA	False	NA	NA	NA	95836683	95852779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95836726_95844431_95844508_95845193_95845352_95851618_95851674_95852491
74757	chr7	-	745	1	Intergenic	novelGene_2985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAATTAAATTATAATTT	NA	False	NA	NA	False	NA	NA	NA	79644401	79643656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_79643700_79644400
74758	chr3	-	271	3	ISM	ENSMUSG00000037152.12	ENSMUST00000135602.3	500	4	462	8	462	-8	3prime_fragment	FALSE	canonical	3	5471	junction_1	370	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCTCATGTGTAGACGGA	NA	False	NA	NA	False	NA	NA	NA	51315625	51312906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_51313041_51314756_51314834_51315565
74759	chr5	+	1160	9	NNC	ENSMUSG00000029578.16	novel	5171	12	NA	NA	-4313	-359	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	147.241669968117	2	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTCACTTCAGTGACT	NA	False	NA	NA	False	NA	NA	NA	142643955	142652883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_142644044_142644819_142644918_142645287_142645381_142646777_142646851_142648789_142648898_142650079_142650245_142651177_142651286_142651848_142652007_142652614
74760	chr16	-	1029	1	NIC	ENSMUSG00000060166.7	novel	4868	11	NA	NA	1227	-909	mono-exon	FALSE	NA	NA	NA	NA	NA	9	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTCACCCCAAAGCATCC	NA	False	NA	NA	False	NA	NA	NA	18041319	18040290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18040300_18041300
74761	chr14	+	529	4	NIC	ENSMUSG00000054763.10	novel	618	3	NA	NA	-26	10	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	14.3527000944073	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTCCTTGTCTTAAATC	NA	False	NA	NA	False	NA	NA	NA	63284413	63286034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_63284500_63284892_63285068_63285676_63285752_63285841
74762	chr19	+	1229	4	NNC	ENSMUSG00000087132.9	novel	984	5	NA	NA	-36	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.4142135623731	5	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAACCTTCAAAA	NA	False	NA	NA	False	NA	NA	NA	4489550	4498338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4489699_4493769_4493817_4497206_4497455_4497552
74763	chr8	+	506	7	NNC	ENSMUSG00000090206.9	novel	968	8	NA	NA	1558	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.5723301886761	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGAGGCCCTAGGCTCGT	NA	False	NA	NA	False	NA	NA	NA	96039787	96047955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96039808_96046303_96046370_96046696_96046789_96047109_96047172_96047277_96047343_96047533_96047567_96047787
74765	chr14	+	709	7	ISM	ENSMUSG00000036339.19	ENSMUST00000133744.8	2996	12	26105	14642	135	4074	internal_fragment	FALSE	canonical	3	30	junction_6	5.27309733985213	1	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCTTTTTGTTGCTTAT	NA	False	NA	NA	False	NA	NA	NA	48709913	48724327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_48709959_48711422_48711537_48714971_48715152_48717760_48717802_48720706_48720791_48722395_48722511_48724197
74766	chr7	-	643	1	NIC	ENSMUSG00000038580.14	novel	534	4	NA	NA	0	-151	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	46	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTCTGGCTGCCTCCTG	NA	False	NA	NA	False	NA	NA	NA	140859044	140858401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140858400_140859000
74767	chr3	+	1960	13	ISM	ENSMUSG00000027878.12	ENSMUST00000079812.8	10500	34	59189	33625	59189	16077	internal_fragment	FALSE	canonical	2	4	junction_12	5.26518966631044	4	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACCCGTGTGAGAATGCT	1088	False	NA	NA	False	NA	NA	NA	97980042	98024052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_97980239_97989232_97989356_98005411_98005646_98006739_98006896_98007515_98007705_98008836_98008951_98009641_98009756_98011664_98011899_98014362_98014474_98018865_98019059_98020325_98020472_98022547_98022662_98024016
74769	chr11	+	1172	3	Antisense	novelGene_ENSMUSG00000040712.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACCCCCCCTAGCGCCGG	NA	False	NA	NA	False	NA	NA	NA	70575975	70578759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_70576997_70577175_70577265_70578697
74770	chr16	-	1892	1	ISM	ENSMUSG00000041205.9	ENSMUST00000040880.9	3280	3	6133	31	6133	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	13	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCACTTTAATCTGTTAA	NA	False	NA	NA	False	NA	NA	NA	20053975	20052083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_20052100_20054000
74771	chr10	-	775	4	Antisense	novelGene_ENSMUSG00000039994.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	21	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCGGCTCTGCAGACCTT	NA	False	NA	NA	False	NA	NA	NA	128068141	128064984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128065342_128066491_128066662_128066773_128066877_128067996
74772	chr6	-	2167	1	Intergenic	novelGene_4221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAGCTGGAAGACTAGGA	NA	False	NA	NA	False	NA	NA	NA	112663565	112661398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_112661400_112663600
74773	chr7	+	270	1	Intergenic	novelGene_2905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCAGTGCTCTTAACCAC	3078	False	NA	NA	False	NA	NA	NA	28074314	28074584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_28074300_28074600
74775	chr13	+	408	1	ISM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	532	12	532	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	37	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGATGAACTATTTCT	6510	False	NA	NA	False	NA	NA	NA	54738551	54738959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_54738600_54739000
74776	chr4	-	1605	5	ISM	ENSMUSG00000028909.18	ENSMUST00000105987.9	5484	30	65693	11	-3674	-10	3prime_fragment	FALSE	canonical	2	6	junction_1	1	4	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAATGCCACCCTGTGGC	NA	False	NA	NA	False	NA	NA	NA	131499906	131495778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_131496872_131497063_131497200_131498477_131498636_131498757_131498884_131499814
74777	chr13	+	470	2	NNC	ENSMUSG00000021497.11	novel	1527	5	NA	NA	110	-5681	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACCATTTCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55862572	55863258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55862658_55862873
74778	chr13	-	1176	3	FSM	ENSMUSG00000006179.10	ENSMUST00000129665.8	783	3	-8	-385	-8	-2	multi-exon	FALSE	canonical	3	7	junction_2	4	15	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTCTCTCTGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	22189400	22186344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_22186981_22187095_22187496_22189260
74779	chr16	+	1238	1	Antisense	novelGene_ENSMUSG00000022515.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATCGAGCTGACAGCTCA	2492	False	NA	NA	False	NA	NA	NA	4759372	4760610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_4759400_4760600
74780	chr1	+	473	6	FSM	ENSMUSG00000026388.16	ENSMUST00000112644.9	488	6	3	12	-2	-12	multi-exon	FALSE	canonical	3	34	junction_1	7.2773621594641	206	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAAGCCTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	120048927	120115907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120115770
74781	chr17	-	255	1	Antisense	novelGene_ENSMUSG00000040312.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGACAAGTTTTTCTCTA	7554	False	NA	NA	False	NA	NA	NA	35830707	35830452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35830500_35830700
74782	chr16	-	1162	3	Intergenic	novelGene_3668	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	5	28	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAAGTGTTTGTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	55609189	55596655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_55596986_55600813_55601569_55609112
74783	chr6	-	918	5	NNC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	63	-14467	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.6975982133	65	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCAAGCCCCAGTATGAA	NA	False	NA	NA	False	NA	NA	NA	88423403	88289554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88289786_88332463_88332630_88335527_88335625_88353185_88353394_88423187
74784	chr7	+	572	2	ISM	ENSMUSG00000035674.14	ENSMUST00000108644.8	351	4	-3	1965	-2	444	5prime_fragment	FALSE	canonical	3	2080	junction_1	0	57	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGAAATAGTGATTTAAT	265	False	NA	NA	False	NA	NA	NA	3620381	3621162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3620407_3620615
74785	chr5	+	519	5	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	65	480	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	162.592089290961	21	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTTGTTGTTGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	116576843	116600637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_116576898_116577427_116577496_116593800_116593934_116599782_116599863_116600453
74788	chr7	-	1059	6	FSM	ENSMUSG00000052605.13	ENSMUST00000064547.13	1080	6	20	1	-5	-1	multi-exon	FALSE	canonical	1	1	junction_5	2.13541565040626	16	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACCGAACCATTATTGGG	NA	False	NA	NA	False	NA	NA	NA	4869172	4847958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4848365_4852448_4852567_4853753_4853825_4854022_4854233_4854391_4854533_4869059
74790	chr17	-	553	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	0	2186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	21.004463811295	4	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAGCCACTGAGCCATG	NA	False	NA	NA	False	NA	NA	NA	69584203	69580170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_69580313_69582217_69582295_69582786_69582902_69583120_69583191_69584054
74791	chr8	-	1518	1	Antisense	novelGene_ENSMUSG00000099031.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATAGCTCCGCCTCTCAT	NA	False	NA	NA	False	NA	NA	NA	71251485	71249967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_71250000_71251500
74792	chr7	+	999	1	Intergenic	novelGene_3038	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGAACTTAATCAT	589	False	NA	NA	False	NA	NA	NA	127196778	127197777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_127196800_127197800
74793	chr7	+	1222	1	FSM	ENSMUSG00000070705.4	ENSMUST00000094651.4	1751	1	12	517	12	-517	mono-exon	FALSE	NA	NA	NA	NA	NA	17	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATACAGACACAAGACTCA	NA	False	NA	NA	False	NA	NA	NA	27977175	27978397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27977200_27978400
74795	chr4	-	500	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	-12	3	-9	-3	multi-exon	FALSE	canonical	3	28	junction_1	58	104	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGACTGGACTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	129512901	129511894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129512156_129512284_129512429_129512806
74796	chr4	-	621	2	NNC	ENSMUSG00000054428.13	novel	1014	2	NA	NA	-159	-590	intron_retention	FALSE	non_canonical	0	0	junction_1	0	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTCAGCCCAAGGGTAGT	9082	False	NA	NA	False	NA	NA	NA	132261129	132260388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132260512_132260631
74797	chr4	+	916	1	Antisense	novelGene_ENSMUSG00000035495.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGGGTCTCCCTTCAC	NA	False	NA	NA	False	NA	NA	NA	46137479	46138395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_46137500_46138400
74799	chr13	-	867	3	ISM	ENSMUSG00000021680.9	ENSMUST00000045583.9	1701	7	4722	11	4722	-11	3prime_fragment	FALSE	canonical	1	1	junction_1	1	6	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAATGTTAGCGTCTCG	NA	False	NA	NA	False	NA	NA	NA	95576617	95567895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_95568603_95572912_95573031_95576575
74800	chr3	-	1564	2	Antisense	novelGene_ENSMUSG00000015522.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATCTTACTACTCACCCG	NA	False	NA	NA	False	NA	NA	NA	95380536	95378341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95378950_95379580
74801	chr7	+	745	2	ISM	ENSMUSG00000074405.9	ENSMUST00000085427.6	2751	3	10426	-85	1672	85	3prime_fragment	FALSE	canonical	3	4	junction_1	0	38	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCTGGCTAATCTTGAAC	NA	False	NA	NA	False	NA	NA	NA	5033994	5036222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_5034279_5035761
74804	chr12	-	433	2	NNC	ENSMUSG00000071456.7	novel	3569	3	NA	NA	-4	-18832	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	15	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGTTTAGAAATCGCA	NA	False	NA	NA	False	NA	NA	NA	3476751	3476055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_3476238_3476500
74812	chr12	+	1329	3	Genic_Genomic	ENSMUSG00000114826.3	novel	4429	1	NA	NA	-3	-15	multi-exon	FALSE	canonical	0	0	junction_1	0	8	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTACTGCTTAACTTCA	NA	False	NA	NA	False	NA	NA	NA	104439586	104444003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_104439692_104442046_104442533_104443265
74813	chr18	+	318	1	Intergenic	novelGene_4542	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGGCGACAACCAATTAG	NA	False	NA	NA	False	NA	NA	NA	46659408	46659726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_46659400_46659700
74814	chr7	+	179	1	Intergenic	novelGene_2976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTTAAAAACAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	65471734	65471913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_65471700_65471900
74815	chrX	-	1039	1	Antisense	novelGene_ENSMUSG00000071723.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTACCCCTGCTGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	93681939	93680900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_93680900_93681900
74816	chr4	+	501	3	Intergenic	novelGene_1855	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	1.5	13	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTGAGAAAGTGACTG	9816	False	NA	NA	False	NA	NA	NA	53351235	53356040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_53351348_53352816_53353067_53355901
74817	chr14	+	422	3	NNC	ENSMUSG00000022111.10	novel	1270	4	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	11	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGTTGTTTTTGCTA	163	False	NA	NA	False	NA	NA	NA	101891475	101933560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_101891556_101903196_101903326_101933347
74818	chr17	-	564	4	FSM	ENSMUSG00000062753.15	ENSMUST00000231948.2	608	4	40	4	-10	-2	multi-exon	FALSE	canonical	3	8	junction_2	112.499876543142	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAAGTTGCCCTCCTTGG	NA	False	NA	NA	False	NA	NA	NA	27784660	27782748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27782991_27783122_27783229_27783535_27783725_27784633
74820	chr3	-	1192	3	ISM	ENSMUSG00000015850.12	ENSMUST00000015994.4	3856	18	10050	1	-658	-1	intron_retention	FALSE	canonical	3	22	junction_1	1.5	21	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACATGCTCTTCGTTATG	NA	False	NA	NA	False	NA	NA	NA	95585119	95583514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95584280_95584420_95584566_95584837
74821	chr6	+	1322	1	Antisense	novelGene_ENSMUSG00000029814.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACCAAAAAAAAAAAAAAATC	393	False	NA	NA	False	NA	NA	NA	49069253	49070575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_49069300_49070600
74823	chr7	+	660	4	FSM	ENSMUSG00000042675.16	ENSMUST00000106357.8	1594	4	934	0	354	0	multi-exon	FALSE	canonical	3	187	junction_1	13.6381816969859	77	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGGCTCACATGGAAT	9201	False	NA	NA	False	NA	NA	NA	126377106	126379686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126377126_126377225_126377270_126377477_126377587_126379198
74824	chr2	+	587	1	ISM	ENSMUSG00000017740.18	ENSMUST00000202223.4	5690	25	38288	2	2543	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTTGATAGCCTGAAGG	1309	False	NA	NA	False	NA	NA	NA	164841053	164841640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164841100_164841600
74826	chr18	-	656	2	Intergenic	novelGene_4516	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	5	junction_1	0	82	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTGTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	24234447	24233613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_24234107_24234284
74827	chr13	+	1120	6	ISM	ENSMUSG00000021457.15	ENSMUST00000120135.8	5363	14	363	25337	33	-884	5prime_fragment	FALSE	canonical	3	55	junction_1	5.71314274283428	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGGCCGTTTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	52737571	52777491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280
74828	chrX	-	755	4	ISM	ENSMUSG00000045802.14	ENSMUST00000059003.5	1479	12	-158	21855	-158	-8701	5prime_fragment	FALSE	canonical	3	25	junction_2	5.31245915016974	73	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCTTTAAATCTTGAA	NA	False	NA	NA	False	NA	NA	NA	95411683	95372983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_95373245_95382022_95382151_95400740_95400850_95411426
74829	chr18	-	599	1	Intergenic	novelGene_4569	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTTAAGCCTTGCCT	NA	False	NA	NA	False	NA	NA	NA	75496591	75495992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_75496000_75496600
74830	chr8	-	946	4	NNC	ENSMUSG00000004630.19	novel	504	4	NA	NA	-5478	2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.24721912892465	25	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGAGTTGAGTGTGTGTT	9852	False	NA	NA	False	NA	NA	NA	3681023	3673374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_3673559_3674507_3674633_3674785_3674901_3680501
74831	chr17	+	1022	5	FSM	ENSMUSG00000024334.10	ENSMUST00000025192.8	1088	5	65	1	1	0	multi-exon	FALSE	canonical	2	3	junction_1	7.14142842854285	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTGTGTCCTTTTCAC	3830	False	NA	NA	False	NA	NA	NA	34311378	34314207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34311503_34312806_34313056_34313281_34313564_34313656_34313793_34313976
74835	chr5	-	952	3	ISM	ENSMUSG00000029392.13	ENSMUST00000200202.2	682	4	323	-457	323	0	3prime_fragment	FALSE	canonical	3	34	junction_1	1	18	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTCCTGTGTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	124641711	124631142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_124631908_124639902_124639996_124641617
74836	chr2	-	641	3	Intergenic	novelGene_2586	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_2	28.5	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGGAGAGGGGAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	26530256	26527246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_26527646_26528052_26528108_26530069
74837	chr5	+	1339	8	ISM	ENSMUSG00000034842.17	ENSMUST00000113083.9	1561	10	56302	6	0	-3	3prime_fragment	FALSE	canonical	0	0	junction_2	0.349927106111883	5	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTAAATGTTTTCCTGT	3081	False	NA	NA	False	NA	NA	NA	92536001	92562478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_92536071_92540327_92541037_92549854_92549888_92551453_92551487_92552695_92552726_92557128_92557162_92559000_92559055_92562100
74839	chr2	+	873	5	Intergenic	novelGene_2741	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	39	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACAGTTCTCAGAACCCTA	4484	False	NA	NA	False	NA	NA	NA	153295915	153362993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_153296044_153312606_153312720_153319791_153319905_153325607_153325765_153362631
74840	chr6	+	1496	1	FSM	ENSMUSG00000033508.9	ENSMUST00000043400.9	1547	1	30	21	30	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	16	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTGTTCATGGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86605175	86606671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86605200_86606700
74843	chr14	-	479	5	FSM	ENSMUSG00000097589.10	ENSMUST00000183079.8	535	5	-21	77	4	-77	multi-exon	FALSE	canonical	0	0	junction_1	6.9462219947249	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACCAGTCATGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	61886232	61862708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_61862812_61869885_61869933_61872973_61873041_61880808_61880905_61886066
74844	chr17	+	716	8	Antisense	novelGene_ENSMUSG00000061613.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	175	2	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTACGCCGACGTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	31866054	31877709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_31866178_31866999_31867072_31867157_31867291_31867640_31867739_31867817_31867867_31870617_31870687_31873952_31874043_31877627
74845	chr11	+	846	2	ISM	ENSMUSG00000020695.15	ENSMUST00000126931.2	831	3	24	779	-1	-779	5prime_fragment	FALSE	canonical	2	4	junction_1	0	11	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACGTAAGGATGAGGTTAAA	1521	False	NA	NA	False	NA	NA	NA	105183492	105216938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_105183728_105216327
74848	chr4	-	1124	1	ISM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	11720	27	11686	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATGAATAAATACCTCG	NA	False	NA	NA	False	NA	NA	NA	119078189	119077065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_119077100_119078200
74849	chr9	-	913	3	Antisense	novelGene_ENSMUSG00000025602.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	33	8	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTACACCGCTCTACTC	NA	False	NA	NA	False	NA	NA	NA	40151169	40118281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_40119051_40121021_40121120_40151123
74850	chr9	-	1470	10	NNC	ENSMUSG00000079469.11	novel	664	6	NA	NA	-3	-2241	at_least_one_novel_splicesite	FALSE	non_canonical	3	21	junction_1	14.7103725897203	9	13	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCAGGTGTGGTGTAATC	NA	False	NA	NA	False	NA	NA	NA	72946936	72927133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_72927451_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
74853	chr2	+	887	1	ISM	ENSMUSG00000075304.3	ENSMUST00000100043.3	2100	2	1888	32	1888	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	24	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGGGTCTCCTCGGGAA	NA	False	NA	NA	False	NA	NA	NA	70307154	70308041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_70307200_70308000
74854	chr5	-	724	1	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	9	-162	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCAAAAGGTGCCGCTGG	5345	False	NA	NA	False	NA	NA	NA	143314935	143314211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143314200_143314900
74855	chr1	-	1045	9	NNC	ENSMUSG00000025977.16	novel	658	5	NA	NA	-26	-4231	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	11.2576362971984	32	16	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCGATTTATTCGTATCTA	NA	False	NA	NA	False	NA	NA	NA	55401911	55343458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55343618_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55401640
74857	chr8	+	890	3	NNC	ENSMUSG00000034361.11	novel	2342	16	NA	NA	5749	-4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	3	23	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGTCAAGCTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	95295026	95297155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95295123_95295218_95295456_95296598
74859	chr18	+	914	2	NNC	ENSMUSG00000097755.3	novel	2398	3	NA	NA	-1263	16	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	0	1	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTTTCCCATCTGAGA	269	False	NA	NA	False	NA	NA	NA	34887790	34891536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34888453_34891284
74860	chr2	+	1068	2	FSM	ENSMUSG00000027394.14	ENSMUST00000144730.2	1053	2	-17	2	-17	-2	multi-exon	FALSE	canonical	3	4	junction_1	0	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCCTTTTATTTCTAATC	NA	False	NA	NA	False	NA	NA	NA	128907887	128910023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_128908224_128909291
74861	chr7	+	589	4	FSM	ENSMUSG00000019738.16	ENSMUST00000145559.8	578	4	-15	4	-5	-3	multi-exon	FALSE	canonical	3	1146	junction_3	50.6776303927307	40	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACACTAGTGTTTCCC	NA	False	NA	NA	False	NA	NA	NA	29931751	29932804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29931962_29932174_29932407_29932491_29932544_29932709
74862	chr9	-	363	1	Intergenic	novelGene_1022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCAGCACTTGGGAGGCA	7995	False	NA	NA	False	NA	NA	NA	44330281	44329918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_44329900_44330300
74863	chr9	-	202	1	Intergenic	novelGene_1047	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAAACCTTTTTTATGAG	NA	False	NA	NA	False	NA	NA	NA	55982354	55982152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_55982200_55982400
74865	chr13	-	870	4	Antisense	novelGene_ENSMUSG00000021360.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	18	32	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACGTGCTTGACAATAAATT	NA	False	NA	NA	False	NA	NA	NA	41016753	41013280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_41013621_41014129_41014413_41015509_41015603_41016599
74866	chr9	+	857	2	ISM	ENSMUSG00000090150.11	ENSMUST00000189998.3	2030	14	-26	33728	-15	8611	5prime_fragment	FALSE	canonical	3	48	junction_1	0	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAATAAATACGTCAACCA	NA	False	NA	NA	False	NA	NA	NA	103940905	103951480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_103941103_103950820
74868	chr17	+	696	1	Intergenic	novelGene_116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTCTATATTTAATAAAAA	6381	False	NA	NA	False	NA	NA	NA	29314476	29315172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_29314500_29315200
74869	chr2	+	858	6	ISM	ENSMUSG00000074665.12	ENSMUST00000099181.2	1479	13	10160	15	10160	-15	3prime_fragment	FALSE	canonical	2	5	junction_4	2.13541565040626	28	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCACTTTCCCTGCATTTG	NA	False	NA	NA	False	NA	NA	NA	153796002	153805757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_153796354_153799049_153799118_153799638_153799682_153801569_153801634_153803435_153803513_153805502
74870	chr7	-	662	3	NNC	ENSMUSG00000118635.2	novel	531	2	NA	NA	-34	4639	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	5	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTCTTTAGAATGTA	NA	False	NA	NA	False	NA	NA	NA	3563915	3557812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_3558141_3562682_3562745_3563643
74871	chr9	-	326	2	ISM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	10642	631	10642	-631	internal_fragment	FALSE	canonical	3	133	junction_1	0	197	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACCTCAATGTCAGGTG	NA	False	NA	NA	False	NA	NA	NA	124034127	124033618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_124033817_124033999
74872	chr8	+	1513	7	FSM	ENSMUSG00000031636.8	ENSMUST00000034053.7	1604	7	16	75	-10	-75	multi-exon	FALSE	canonical	0	0	junction_2	1.25830573921179	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTATTCTACATGCGAAC	NA	False	NA	NA	False	NA	NA	NA	46338513	46372510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_46338710_46349784_46349937_46353511_46353597_46361505_46361694_46368165_46368297_46370494_46370607_46371861
74873	chr7	-	1048	5	FSM	ENSMUSG00000025499.19	ENSMUST00000097957.11	1199	5	143	8	20	-4	multi-exon	FALSE	canonical	3	437	junction_1	76.3392919799496	128	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTGACTTGTCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	140773775	140770846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
74875	chr2	-	975	1	Intergenic	novelGene_2591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCCTCTCCCTACCCTT	7412	False	NA	NA	False	NA	NA	NA	29617395	29616420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_29616400_29617400
74876	chr8	-	1278	1	Intergenic	novelGene_1597	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTGGGTTTGAACCTT	NA	False	NA	NA	False	NA	NA	NA	22719377	22718099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_22718100_22719400
74877	chr17	-	1432	1	FSM	ENSMUSG00000066720.8	ENSMUST00000085989.8	1443	1	9	2	9	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTCCTCTGGTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	23902991	23901559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23901600_23903000
74878	chr2	+	483	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	23	603	23	-603	multi-exon	FALSE	canonical	3	3938	junction_1	0	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCATTTTGTGTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	112092293	112093011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_112092423_112092657
74879	chr7	+	1079	4	FSM	ENSMUSG00000054169.8	ENSMUST00000038069.9	1048	4	-31	0	-31	0	multi-exon	FALSE	canonical	3	18	junction_2	7.31816613336672	53	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCTCCTTCGACTCTA	1076	False	NA	NA	False	NA	NA	NA	24476599	24484081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24476765_24477550_24477911_24480294_24480655_24483887
74880	chr16	+	1393	1	Intergenic	novelGene_3672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTAGGCTCTTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	56966510	56967903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_56966500_56967900
74881	chr1	+	725	1	Antisense	novelGene_ENSMUSG00000037351.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGACCTGGACGGATGC	NA	False	NA	NA	False	NA	NA	NA	36748275	36749000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_36748300_36749000
74882	chr2	+	822	1	Intergenic	novelGene_2684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCTAGGATCTCCATG	NA	False	NA	NA	False	NA	NA	NA	117015750	117016572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_117015800_117016600
74883	chr12	+	830	3	NNC	ENSMUSG00000021102.5	novel	2925	2	NA	NA	-15	117	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	325.5	84	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTGTGTGAGTCATTAAA	6343	False	NA	NA	False	NA	NA	NA	104998931	105007115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_104999017_104999078_104999242_105006533
74885	chrX	-	1412	2	FSM	ENSMUSG00000073293.5	ENSMUST00000103006.4	1775	2	351	12	351	-12	multi-exon	FALSE	canonical	3	9	junction_1	0	22	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATTGGAAATGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	6084718	6080761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_6081851_6084395
74886	chr14	-	1335	1	Genic_Genomic	ENSMUSG00000108975.2	novel	NA	NA	NA	NA	-36	-327	mono-exon	FALSE	NA	NA	NA	NA	NA	7	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTTGTTACCTTTGCA	NA	False	NA	NA	False	NA	NA	NA	72770125	72768790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_72768800_72770100
74889	chr4	-	1037	1	Antisense	novelGene_ENSMUSG00000041025.16_AS_novelGene_ENSMUSG00000094439.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAGAAAAGAAAAGGCCT	8537	False	NA	NA	False	NA	NA	NA	139344025	139342988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_139343000_139344000
74890	chr9	-	1996	11	Intergenic	novelGene_1111	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGGATAACCCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	72766207	72713739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_72713805_72716732_72717040_72749976_72750120_72752137_72752276_72755189_72755328_72755594_72755752_72757030_72757191_72758759_72759009_72762235_72762401_72764053_72764361_72766040
74891	chr2	-	1433	12	NNC	ENSMUSG00000075256.10	novel	2604	13	NA	NA	13	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	3.99586563197017	2	25	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAAGATATATACAAATAG	NA	False	NA	NA	False	NA	NA	NA	79201196	79162876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_79163001_79163822_79164002_79168884_79168982_79171636_79171746_79171830_79171857_79172505_79172566_79172646_79172825_79173560_79173636_79185118_79185409_79191667_79191732_79199023_79199156_79201097
74893	chr19	+	1454	4	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	-20	26003	9	-26003	5prime_fragment	FALSE	canonical	0	0	junction_1	18.4932420089069	5	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGAATTTCTACTTCATT	NA	False	NA	NA	False	NA	NA	NA	58500432	58515457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279
74894	chr13	-	842	1	ISM	ENSMUSG00000021508.12	ENSMUST00000224801.2	1467	3	6821	0	6821	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTACTCCTGGGCTGTT	NA	False	NA	NA	False	NA	NA	NA	56437297	56436455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_56436500_56437300
74896	chr11	-	686	3	FSM	ENSMUSG00000085175.8	ENSMUST00000152784.8	686	3	-29	29	-29	-29	multi-exon	FALSE	canonical	2	4	junction_1	9	107	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATAAAAGAGTGTTGAAC	NA	False	NA	NA	False	NA	NA	NA	82671897	82670455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_82670762_82670960_82671125_82671681
74897	chr4	+	1168	7	ISM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	7808	7892	154	591	intron_retention	FALSE	canonical	3	98	junction_5	21.0851448497119	1	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCCTCACACTTACGAAG	NA	False	NA	NA	False	NA	NA	NA	141036358	141048803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527
74898	chr15	-	699	9	FSM	ENSMUSG00000022487.15	ENSMUST00000023129.15	819	9	64	56	3	0	multi-exon	FALSE	canonical	3	70	junction_8	17.7019596372831	306	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCAAGTACTTTTTT	8426	False	NA	NA	False	NA	NA	NA	103338833	103310887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338782
74899	chr13	-	455	4	Genic_Genomic	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7314	958	multi-exon	FALSE	canonical	0	0	junction_1	30.092450142113	868	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAGGAACCTTGACTTAG	1880	False	NA	NA	False	NA	NA	NA	66439279	66427991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66428153_66431569_66431631_66431830_66431958_66439173
74900	chr13	-	624	1	Intergenic	novelGene_1376	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	55330560	55329936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55329900_55330600
74901	chr15	+	815	2	Antisense	novelGene_ENSMUSG00000097536.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	24	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATTTTGTTGAATGGTAA	NA	False	NA	NA	False	NA	NA	NA	96116038	96120756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96116247_96120149
74904	chr2	-	1361	1	Intergenic	novelGene_2722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGAGCCGCCCAAGCC	NA	False	NA	NA	False	NA	NA	NA	146856660	146855299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_146855300_146856700
74905	chr10	-	364	2	ISM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	1178	27	1168	-27	3prime_fragment	FALSE	canonical	3	958	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAGGGACCTACAGCAG	4272	False	NA	NA	False	NA	NA	NA	81101590	81100573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_81100832_81101484
74906	chr19	+	317	2	NNC	ENSMUSG00000085285.2	novel	769	3	NA	NA	-557	-1445	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTCTTGCTTTGAATGCA	NA	False	NA	NA	False	NA	NA	NA	6695159	6695757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6695264_6695544
74907	chr8	+	309	1	Intergenic	novelGene_1672	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTAAGAATTTCTGAAGG	NA	False	NA	NA	False	NA	NA	NA	79330564	79330873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_79330600_79330900
74908	chr1	-	508	1	NIC	ENSMUSG00000026196.8	novel	5659	11	NA	NA	57	-75084	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAAGATGACTCAAACGGCA	NA	False	NA	NA	False	NA	NA	NA	71142248	71141740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_71141700_71142200
74909	chr16	-	1271	1	Intergenic	novelGene_3572	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAGTCTATGAGGGCAAT	NA	False	NA	NA	False	NA	NA	NA	4590824	4589553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_4589600_4590800
74910	chr18	-	617	1	ISM	ENSMUSG00000024570.8	ENSMUST00000025462.7	1377	6	7776	1	2321	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	43	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAATTTTGTGTATACGCA	781	False	NA	NA	False	NA	NA	NA	80236097	80235480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_80235500_80236100
74911	chr17	+	768	1	ISM	ENSMUSG00000034265.9	ENSMUST00000089185.6	3078	9	260440	47	260440	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGGACAGCCAATAAAATG	3602	False	NA	NA	False	NA	NA	NA	5803271	5804039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_5803300_5804000
74912	chr11	-	1338	5	ISM	ENSMUSG00000033987.17	ENSMUST00000084803.12	14889	81	101869	2296	61844	-943	internal_fragment	FALSE	canonical	3	7	junction_2	2.48746859276655	1	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAACAGCCATTCTCCATG	NA	False	NA	NA	False	NA	NA	NA	117918176	117914844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_117915646_117915928_117916073_117916343_117916527_117917498_117917682_117918149
74915	chr7	-	1189	1	NIC	ENSMUSG00000109420.2	novel	592	2	NA	NA	2	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	23	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTGGAGGCTGGTGAGGA	NA	False	NA	NA	False	NA	NA	NA	28509920	28508731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28508700_28509900
74916	chr7	+	633	1	FSM	ENSMUSG00000044030.5	ENSMUST00000053713.5	2734	1	1894	207	1894	-207	mono-exon	FALSE	NA	NA	NA	NA	NA	39	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGATGGGTTGTTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	18739862	18740495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18739900_18740500
74917	chr15	+	909	3	Antisense	novelGene_ENSMUSG00000045608.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGAAAGGGTTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	95522250	95538592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_95522897_95530156_95530346_95538518
74918	chr13	+	852	4	ISM	ENSMUSG00000037851.14	ENSMUST00000047363.14	4396	34	31	45218	-30	736	5prime_fragment	FALSE	canonical	3	1400	junction_1	175.617640217478	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTATATTAAATAAATAAGT	NA	False	NA	NA	False	NA	NA	NA	49835636	49842525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999
74919	chr8	-	767	8	FSM	ENSMUSG00000031586.18	ENSMUST00000053251.12	2466	8	278	1421	-193	0	multi-exon	FALSE	canonical	3	696	junction_1	308.820996959833	171	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTTAAGAAATGTGTTA	NA	False	NA	NA	False	NA	NA	NA	34419613	34274091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
74924	chr18	+	1437	1	Genic_Genomic	ENSMUSG00000053477.19	novel	NA	NA	NA	NA	-49	-11759	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGATTTCGGCCCCAAAC	1568	False	NA	NA	False	NA	NA	NA	69477167	69478604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_69477200_69478600
74925	SIRV4001	-	1167	1	Antisense	novelGene_SIRV4001A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTAATCCAGATTGTTA	NA	False	NA	NA	False	NA	NA	NA	3874	2707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV4001_-_2700_3900
74927	chr16	+	385	4	FSM	ENSMUSG00000096215.9	ENSMUST00000185147.8	399	4	14	0	7	0	multi-exon	FALSE	canonical	3	31	junction_1	9.41629792788369	223	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	NA	False	NA	NA	NA	4825229	4826173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_4825283_4825607_4825753_4825835_4825919_4826069
74930	chr5	-	611	1	Intergenic	novelGene_721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGAAGTTCTACTGCAG	NA	False	NA	NA	False	NA	NA	NA	64791550	64790939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_64790900_64791600
74931	chr18	-	1271	1	FSM	ENSMUSG00000051439.8	ENSMUST00000237042.2	868	1	392	-795	392	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	17	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATAACAATGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36859399	36858128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_36858100_36859400
74932	chr11	+	1246	1	NIC	ENSMUSG00000020898.19	novel	4164	23	NA	NA	-7	-5391	mono-exon	FALSE	NA	NA	NA	NA	NA	2	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTAGCAAGACTCCATGGT	5302	False	NA	NA	False	NA	NA	NA	68906952	68908198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68907000_68908200
74933	chr5	-	1159	1	Intergenic	novelGene_856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTAGATCTCTGCGTGTG	NA	False	NA	NA	False	NA	NA	NA	128179656	128178497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_128178500_128179700
74935	chr2	-	1084	3	ISM	ENSMUSG00000037279.14	ENSMUST00000103171.10	1547	4	643	0	274	0	3prime_fragment	FALSE	canonical	3	14	junction_1	5.5	2	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTTTAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	144172972	144147094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_144147840_144159630_144159821_144172823
74939	chr7	-	1713	10	FSM	ENSMUSG00000040136.11	ENSMUST00000210986.2	1845	10	126	6	79	-6	multi-exon	FALSE	canonical	1	2	junction_2	1.49897084035912	4	33	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTAAGTATGTGTGGGT	1465	False	NA	NA	False	NA	NA	NA	45829331	45800025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45800314_45800959_45801095_45803840_45803997_45806530_45806696_45815342_45815532_45816316_45816560_45819247_45819415_45824783_45824906_45827865_45828008_45829225
74940	chr12	+	454	4	FSM	ENSMUSG00000020562.8	ENSMUST00000020878.8	673	4	218	1	218	-1	multi-exon	FALSE	canonical	3	39	junction_3	13.0213499897497	233	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCATGTGTCTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	33445070	33451265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_33445198_33448277_33448443_33448546_33448635_33451191
74942	chr15	+	988	1	Genic_Genomic	ENSMUSG00000097050.2	novel	NA	NA	NA	NA	2747	176	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCAGTTGTACCTCAGAG	4425	False	NA	NA	False	NA	NA	NA	102181744	102182732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_102181700_102182700
74943	chrX	-	830	1	Intergenic	novelGene_4007	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTATCTGTCGACTCTC	NA	False	NA	NA	False	NA	NA	NA	107780285	107779455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_107779500_107780300
74944	chr12	-	865	2	Intergenic	novelGene_4354	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTGTGTGTGTACA	NA	False	NA	NA	False	NA	NA	NA	54221966	54216982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_54217723_54221841
74945	chr2	-	1016	1	FSM	ENSMUSG00000075012.5	ENSMUST00000099678.5	3134	1	2105	13	2105	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAGAACTTAATTCATGA	NA	False	NA	NA	False	NA	NA	NA	102280739	102279723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_102279700_102280700
74946	chr12	-	681	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	19	1639	13	-1055	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAATCAGAATGGATGAG	NA	False	NA	NA	False	NA	NA	NA	79136406	79129076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
74948	chr7	+	910	1	ISM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	12755	20	1104	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	26	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGATAGGACTTTGTGAA	8806	False	NA	NA	False	NA	NA	NA	19128689	19129599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_19128700_19129600
74951	chr5	-	1129	1	Intergenic	novelGene_843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTTCCTTGCCCCTCT	NA	False	NA	NA	False	NA	NA	NA	119234728	119233599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_119233600_119234700
74952	chr8	+	522	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182174.8	498	4	-23	-1	-23	0	multi-exon	FALSE	canonical	3	132	junction_1	31.0590834807897	232	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	175	False	NA	NA	False	NA	NA	NA	88199416	88252182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88252042
74953	chr14	+	661	4	NNC	ENSMUSG00000021996.17	novel	759	4	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	597.402339764045	6	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAACAACAAAATGAGCA	NA	False	NA	NA	False	NA	NA	NA	74969769	74976891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_74969829_74973399_74973475_74975868_74975958_74976453
74954	chr4	-	1089	1	Intergenic	novelGene_2004	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAGGCAGCTTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	141795316	141794227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_141794200_141795300
74955	chr12	+	989	1	FSM	ENSMUSG00000064427.3	ENSMUST00000082493.3	136	1	-856	3	-856	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	23	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGGAAAAAAACGAGTTTTA	NA	False	NA	NA	False	NA	NA	NA	17595290	17596279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_17595300_17596300
74956	chr2	-	831	5	NNC	ENSMUSG00000063275.16	novel	871	6	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	42.8018691180654	86	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGCATTGTTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	14060783	14031641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_14031818_14040589_14040769_14049593_14049683_14049921_14050067_14060541
74957	chr10	+	1116	4	FSM	ENSMUSG00000009646.14	ENSMUST00000009790.14	1091	4	-43	18	-43	-12	multi-exon	FALSE	canonical	1	3	junction_2	0.471404520791032	11	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTAGAAAACTGTAAGA	9364	False	NA	NA	False	NA	NA	NA	59239438	59257780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59239804_59246798_59246888_59252169_59252336_59257284
74959	chr14	+	853	1	Intergenic	novelGene_517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCCCAAAATAAATAAATCC	NA	False	NA	NA	False	NA	NA	NA	13818799	13819652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_13818800_13819700
74962	chr16	+	569	3	FSM	ENSMUSG00000014232.15	ENSMUST00000137745.2	515	3	-52	-2	-52	2	multi-exon	FALSE	canonical	3	128	junction_1	17.5	59	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTCTTTCGGAGTCCC	3256	False	NA	NA	False	NA	NA	NA	3726850	3731438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_3727018_3729314_3729427_3731148
74964	SIRV6	+	238	2	ISM	SIRV6A	SIRV609	485	4	-9	472	-2	-302	intron_retention	FALSE	canonical	3	25662	junction_1	0	436	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCGACAGTCGAAACCAGC	NA	False	NA	NA	False	NA	NA	NA	1128	1648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV6_+_1187_1468
74967	chr17	-	1325	4	Antisense	novelGene_ENSMUSG00000071037.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACGGCAGACACGCAGT	NA	False	NA	NA	False	NA	NA	NA	85472562	85467184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_85467668_85468269_85468413_85469460_85469635_85472037
74968	chr10	-	598	1	Intergenic	novelGene_3488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGCCCACCGT	NA	False	NA	NA	False	NA	NA	NA	80004590	80003992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_80004000_80004600
74969	chr18	-	420	1	Antisense	novelGene_ENSMUSG00000054477.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTTACCATGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	45691553	45691133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_45691100_45691600
74970	chr7	+	797	1	Antisense	novelGene_ENSMUSG00000030641.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCGCCCTCCGGCCGCTCG	NA	False	NA	NA	False	NA	NA	NA	92522586	92523383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_92522600_92523400
74971	chr16	-	986	1	Intergenic	novelGene_3574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAGAATAATAAAAGTAA	NA	False	NA	NA	False	NA	NA	NA	7752214	7751228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_7751200_7752200
74972	chr11	-	430	2	NNC	ENSMUSG00000044894.15	novel	1521	2	NA	NA	3	-14	intron_retention	FALSE	canonical	0	0	junction_1	0	28	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTATGGACTTCCCTTTGT	2950	False	NA	NA	False	NA	NA	NA	53321651	53319793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_53319978_53321405
74973	chr12	-	1652	5	Intergenic	novelGene_4457	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_3	1.6393596310755	7	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGGTTGGATTTACT	NA	False	NA	NA	False	NA	NA	NA	104570494	104559623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_104560487_104564141_104564378_104565230_104565480_104570093_104570219_104570315
74975	chr5	-	226	2	ISM	ENSMUSG00000000568.16	ENSMUST00000164833.2	699	6	2173	874	2173	241	internal_fragment	FALSE	canonical	3	147	junction_1	0	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCCTTCACTTATTTC	NA	False	NA	NA	False	NA	NA	NA	100110436	100109900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100110064_100110373
74977	chr5	+	404	1	Intergenic	novelGene_656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAGAACTTCTACCAAAGT	3445	False	NA	NA	False	NA	NA	NA	3347662	3348066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_3347700_3348100
74979	chr17	+	1124	1	Intergenic	novelGene_315	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTTCACTAATGCAAAAT	NA	False	NA	NA	False	NA	NA	NA	88302310	88303434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_88302300_88303400
74980	chr14	+	851	1	FSM	ENSMUSG00000099966.2	ENSMUST00000190699.2	3040	1	-8	2197	-8	-2197	mono-exon	FALSE	NA	NA	NA	NA	NA	23	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTACAGTGTACAACTTAA	2583	False	NA	NA	False	NA	NA	NA	20691068	20691919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20691100_20691900
74981	chr2	-	362	1	ISM	ENSMUSG00000054074.10	ENSMUST00000091420.6	4376	2	3417	1190	-1062	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATGTCAAAAGGTTG	5540	False	NA	NA	False	NA	NA	NA	18050445	18050083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_18050100_18050400
74983	chr3	-	815	4	NNC	ENSMUSG00000028099.9	novel	808	4	NA	NA	2	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	94.4539864460763	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTTTACCAGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	96634789	96630751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_96631016_96631112_96631369_96633149_96633316_96634660
74984	chr2	-	577	1	FSM	ENSMUSG00000103957.2	ENSMUST00000194123.2	606	1	-1	30	-1	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAATAAATAAATAAAATT	NA	False	NA	NA	False	NA	NA	NA	127111975	127111398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_127111400_127112000
74986	ERCC-00076	+	626	1	FSM	ERCC-00076A	DQ883650	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00076_+_0_600
74987	chr7	-	390	2	Antisense	novelGene_ENSMUSG00000048078.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTCTCCCTTTAATG	NA	False	NA	NA	False	NA	NA	NA	96551550	96526047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_96526128_96551240
74989	chr2	+	331	1	ISM	ENSMUSG00000087377.2	ENSMUST00000124336.2	921	2	7229	417	7229	-417	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAGCATGGTTTCTAGAA	2682	False	NA	NA	False	NA	NA	NA	132102505	132102836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_132102500_132102800
74990	chr2	+	1483	3	Intergenic	novelGene_2711	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	48	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCATTTATGGATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	131685022	131696013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_131685298_131692228_131692491_131695067
74991	chr2	-	1025	3	Antisense	novelGene_ENSMUSG00000044647.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	12	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACAGTTTATTTGCACT	NA	False	NA	NA	False	NA	NA	NA	65839918	65831919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_65832658_65834827_65834950_65839753
74992	chr17	-	614	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174321.2	430	2	-78	-106	-78	-6	multi-exon	FALSE	canonical	2	5	junction_1	0	119	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAATTATTTATATTCCCT	1037	False	NA	NA	False	NA	NA	NA	34128369	34127161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34127561_34128154
74994	chr10	-	1019	1	ISM	ENSMUSG00000037747.10	ENSMUST00000046513.10	2877	5	39555	1036	33084	159	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTGTACGTTGTATA	NA	False	NA	NA	False	NA	NA	NA	70395566	70394547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_70394500_70395600
74995	chr5	+	836	2	FSM	ENSMUSG00000086655.2	ENSMUST00000127792.2	1599	2	0	763	0	-763	multi-exon	FALSE	canonical	3	4	junction_1	0	31	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATGGCTCAAGAGGAGA	NA	False	NA	NA	False	NA	NA	NA	116261672	116266406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_116261887_116265784
74996	chr17	+	1183	2	FSM	ENSMUSG00000039269.6	ENSMUST00000044326.5	1290	2	87	20	52	2	multi-exon	FALSE	canonical	3	7	junction_1	0	20	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCAGTTCTTGAAATCGA	3336	False	NA	NA	False	NA	NA	NA	35878433	35879829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35878518_35878730
74997	chr3	-	1815	1	Intergenic	novelGene_3098	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCAGTCCAGAACAATGAA	NA	False	NA	NA	False	NA	NA	NA	35876504	35874689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_35874700_35876500
74999	chr13	-	1103	7	NIC	ENSMUSG00000034789.9	novel	1168	8	NA	NA	51	2	intron_retention	FALSE	canonical	3	458	junction_6	60.0101843208486	14	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAGCTTCTGAACTGTA	6659	False	NA	NA	False	NA	NA	NA	55469541	55467736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_55468028_55468124_55468188_55468315_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
75000	chr2	+	499	4	NNC	ENSMUSG00000037938.5	novel	1325	4	NA	NA	8	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	300.274319026231	6	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTCTGATTCCAGCCTTC	3937	False	NA	NA	False	NA	NA	NA	128971731	128975372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128971778_128972097_128972239_128972320_128972478_128975217
75002	chr8	-	1254	2	Antisense	novelGene_ENSMUSG00000046295.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	35	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACTAAAGTGTGTGGG	NA	False	NA	NA	False	NA	NA	NA	71859400	71857997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_71859148_71859296
75003	chr10	-	858	1	NIC	ENSMUSG00000020107.11	novel	1852	4	NA	NA	-2	-6409	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTCTCCTGAGCGACAG	NA	False	NA	NA	False	NA	NA	NA	59838935	59838077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_59838100_59838900
75005	chr4	+	219	1	Intergenic	novelGene_2186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCGGGCGGCGGGACTT	NA	False	NA	NA	False	NA	NA	NA	156390115	156390334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_156390100_156390300
75006	chr13	+	1471	1	ISM	ENSMUSG00000044081.8	ENSMUST00000049518.5	2624	3	10823	341	2752	-341	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGGGTTTTATATCAAT	NA	False	NA	NA	False	NA	NA	NA	67903145	67904616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_67903100_67904600
75008	chr11	+	286	3	NNC	ENSMUSG00000059278.10	novel	671	3	NA	NA	49	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	640	1	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTGTGTCTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	69286688	69287503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69286697_69287066_69287187_69287345
75009	chr6	+	1501	12	NNC	ENSMUSG00000029798.12	novel	4767	23	NA	NA	75	-306	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.82725011293107	3	30	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCATTCCTGAGTAAGTTT	NA	False	NA	NA	False	NA	NA	NA	57558067	57596607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_57558218_57560156_57560318_57561534_57561612_57575413_57575642_57576949_57577045_57581057_57581186_57584026_57584164_57584618_57584693_57587787_57587907_57588759_57588820_57595597_57595692_57596429
75010	chr8	-	1637	4	Antisense	novelGene_ENSMUSG00000052557.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGAAAGAACAATGGTG	NA	False	NA	NA	False	NA	NA	NA	117932135	117922502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_117922640_117923188_117923329_117930688_117930797_117930883
75012	chr12	-	1800	1	FSM	ENSMUSG00000021039.10	ENSMUST00000223119.2	479	1	13	-1334	13	1334	mono-exon	FALSE	NA	NA	NA	NA	NA	6	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTGTAAGCTCAATAAA	NA	False	NA	NA	False	NA	NA	NA	87519026	87517226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87517200_87519000
75014	chr10	-	716	1	Intergenic	novelGene_3392	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CCAAAATCAAGAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	12322921	12322205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_12322200_12322900
75016	chr1	+	749	5	FSM	ENSMUSG00000003464.14	ENSMUST00000147799.8	855	5	52	54	35	-54	multi-exon	FALSE	canonical	3	412	junction_2	19.600701518058	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGCTAAAAGGGGAAATT	NA	False	NA	NA	False	NA	NA	NA	171954374	171958524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178
75017	chr4	+	977	7	ISM	ENSMUSG00000028552.14	ENSMUST00000175776.8	2802	25	-167	72153	-23	101	5prime_fragment	FALSE	canonical	3	150	junction_4	24.4176620957499	23	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTTACATCTGTAAAGTC	NA	False	NA	NA	False	NA	NA	NA	109137441	109170509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074
75018	chr14	+	332	1	ISM	ENSMUSG00000051615.15	ENSMUST00000062117.14	4191	2	25379	3040	25379	-3040	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGAAACCAGAATTCCT	NA	False	NA	NA	False	NA	NA	NA	120741234	120741566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_120741200_120741600
75020	chr14	+	1404	1	ISM	ENSMUSG00000006527.17	ENSMUST00000054230.12	7837	21	105669	34	24933	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	5	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGGATTAAAAACAGAACA	NA	False	NA	NA	False	NA	NA	NA	30543240	30544644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30543200_30544600
75021	chr19	-	1440	3	Antisense	novelGene_ENSMUSG00000099988.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_2	1.5	42	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGGTTTTTTTTTAAGA	5185	False	NA	NA	False	NA	NA	NA	53052904	53039164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_53040340_53050500_53050648_53052786
75024	chr4	+	1208	1	ISM	ENSMUSG00000045349.16	ENSMUST00000105824.8	3512	10	9316	406	2984	-406	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCACTTTGAGACAAATAAA	NA	False	NA	NA	False	NA	NA	NA	137987029	137988237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137987000_137988200
75025	chr19	-	607	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58652	-9	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	6.5	158	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCAACAGGTGTGATG	NA	False	NA	NA	False	NA	NA	NA	40923939	40917379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_40917737_40922870_40923027_40923845
75026	chr7	-	524	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	54	-2	-17	2	multi-exon	FALSE	canonical	3	90	junction_1	37	323	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTCGAAGTTCATGCCG	9654	False	NA	NA	False	NA	NA	NA	6158942	6145282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_6145619_6146060_6146150_6158843
75027	chr5	+	695	3	Antisense	novelGene_ENSMUSG00000029207.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	2.5	44	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCTTTGTAAATAAAGAT	NA	False	NA	NA	False	NA	NA	NA	66499917	66502847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_66500212_66500896_66500982_66502531
75028	chr2	+	1708	1	NIC	ENSMUSG00000079008.3	novel	3018	4	NA	NA	59	-11017	mono-exon	FALSE	NA	NA	NA	NA	NA	4	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCTACCATACATACAAGC	NA	False	NA	NA	False	NA	NA	NA	150099495	150101203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_150099500_150101200
75029	chr10	+	538	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_2	20	127	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACCAACTCCCCAACTGT	NA	False	NA	NA	False	NA	NA	NA	61670316	61709992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_61670501_61698165_61698280_61709752
75030	chr5	-	395	1	Antisense	novelGene_ENSMUSG00000097561.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATGAATAGCCCTGCAAC	NA	False	NA	NA	False	NA	NA	NA	29585061	29584666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_29584700_29585100
75037	chr8	+	971	1	Intergenic	novelGene_1574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTATCAGTAAGAAACGGTA	NA	False	NA	NA	False	NA	NA	NA	12527561	12528532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_12527600_12528500
75038	chr13	-	405	2	Antisense	novelGene_ENSMUSG00000113074.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	11	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATGCATTCCAGAACGG	NA	False	NA	NA	False	NA	NA	NA	70253206	70251576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_70251918_70253142
75039	chr3	-	733	2	FSM	ENSMUSG00000074653.11	ENSMUST00000130731.2	705	2	-26	-2	-6	2	multi-exon	FALSE	canonical	3	18	junction_1	0	80	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGCCTTCAGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	30753985	30752268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30752864_30753847
75040	chr1	-	502	2	Antisense	novelGene_ENSMUSG00000079139.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCAGGGCGGCGGCAGCG	6480	False	NA	NA	False	NA	NA	NA	135161137	135159801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_135159955_135160788
75041	chr2	+	467	1	NIC	ENSMUSG00000063019.6	novel	1107	3	NA	NA	24	-28679	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGACTCCAGAAACAAAC	5241	False	NA	NA	False	NA	NA	NA	157209537	157210004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_157209500_157210000
75043	chr3	-	615	3	NNC	ENSMUSG00000105837.5	novel	655	3	NA	NA	-70	3	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	0	81	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACCCATTTTTTTCTTG	6891	False	NA	NA	False	NA	NA	NA	129325828	129321112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_129321464_129324707_129324814_129325670
75047	chr7	-	1154	9	ISM	ENSMUSG00000030862.14	ENSMUST00000033149.5	3498	14	284	16929	167	-2680	5prime_fragment	FALSE	canonical	0	0	junction_4	1.21834929310112	1	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATGAAGGAGTGAGTACG	NA	False	NA	NA	False	NA	NA	NA	131756184	131661473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_131661660_131663795_131663920_131672545_131672635_131680501_131680653_131681765_131681851_131708011_131708152_131730080_131730191_131745396_131745496_131756014
75049	chr1	-	1491	1	Antisense	novelGene_ENSMUSG00000040423.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAAACCCCAGAGCG	NA	False	NA	NA	False	NA	NA	NA	160802531	160801040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160801000_160802500
75050	chr18	+	763	2	NNC	ENSMUSG00000098702.2	novel	890	2	NA	NA	11	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAGAAAGAGAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	61859514	61868946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61860078_61868746
75052	chr11	-	404	2	Antisense	novelGene_ENSMUSG00000087675.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTGAGTAAAAGATAGGGA	NA	False	NA	NA	False	NA	NA	NA	119459870	119459090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_119459261_119459636
75053	chr8	+	1088	4	ISM	ENSMUSG00000031636.8	ENSMUST00000210422.2	1479	8	28245	-135	-1267	-75	3prime_fragment	FALSE	canonical	0	0	junction_1	1.24721912892465	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTATTCTACATGCGAAC	NA	False	NA	NA	False	NA	NA	NA	46366801	46372510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_46366998_46368165_46368297_46370494_46370607_46371861
75054	chr11	+	665	1	NIC	ENSMUSG00000085165.2	novel	428	2	NA	NA	182	-1423	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTAGGAGGCAGCTTTTGG	1525	False	NA	NA	False	NA	NA	NA	29465267	29465932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29465300_29465900
75055	chr19	-	796	2	FSM	ENSMUSG00000024790.9	ENSMUST00000113533.3	1442	2	646	0	646	0	multi-exon	FALSE	canonical	3	283	junction_1	0	62	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACAGGAACTTTTAGAC	NA	False	NA	NA	False	NA	NA	NA	6168034	6166029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6166618_6167826
75056	chr13	-	489	3	Intergenic	novelGene_1349	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	4	16	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAATGCCCAGCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	41122639	41118710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_41118929_41119632_41119778_41122513
75057	chr17	-	684	1	Intergenic	novelGene_312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCTTTTTCATTTTAT	NA	False	NA	NA	False	NA	NA	NA	87823566	87822882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_87822900_87823600
75058	chr7	-	828	5	ISM	ENSMUSG00000030707.16	ENSMUST00000106364.8	1747	11	3032	2	39	-2	3prime_fragment	FALSE	canonical	3	11	junction_2	3	79	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTCAGACTCCGGTGAA	NA	False	NA	NA	False	NA	NA	NA	126300360	126298946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163
75059	chr10	-	778	1	ISM	ENSMUSG00000040502.6	ENSMUST00000040307.6	3037	4	3357	1039	3357	-1039	mono-exon	FALSE	NA	NA	NA	NA	NA	22	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGGGCCTCCTTTCTCAT	8659	False	NA	NA	False	NA	NA	NA	126892696	126891918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_126891900_126892700
75061	chr3	+	1474	1	Genic_Genomic	ENSMUSG00000058388.15	novel	NA	NA	NA	NA	-1284	-19262	mono-exon	FALSE	NA	NA	NA	NA	NA	9	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGGCGGGAAGGCGGCC	NA	False	NA	NA	False	NA	NA	NA	103874141	103875615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_103874100_103875600
75066	chr2	+	642	3	Intergenic	novelGene_2608	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	0.5	22	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATTGTTATTATTATTA	NA	False	NA	NA	False	NA	NA	NA	34021486	34027599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_34021538_34024820_34024947_34027134
75067	chr14	+	703	7	NIC	ENSMUSG00000092232.2	novel	1245	9	NA	NA	364	-28	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	925.272167166685	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAATTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55121261	55135566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55121342_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
75069	chr19	-	809	5	NIC	ENSMUSG00000044948.18	novel	1940	15	NA	NA	16870	45	combination_of_known_splicesites	FALSE	canonical	2	3	junction_4	3.67423461417477	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGTGTCGCTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	47735149	47725999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_47726327_47726467_47726622_47727216_47727298_47728108_47728274_47735067
75070	chr15	-	252	2	NNC	ENSMUSG00000022474.16	novel	1059	7	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81844986	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835490_81844915
75071	chr18	-	747	1	ISM	ENSMUSG00000097080.9	ENSMUST00000181757.8	1173	2	11395	19	10708	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCTTTGGGTTTCCTA	8963	False	NA	NA	False	NA	NA	NA	38372223	38371476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_38371500_38372200
75072	chr13	+	877	2	FSM	ENSMUSG00000012429.10	ENSMUST00000049744.4	2672	2	26	1769	6	80	multi-exon	FALSE	canonical	3	374	junction_1	0	98	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATTTTTGTGAATATG	NA	False	NA	NA	False	NA	NA	NA	17870023	17871921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_17870406_17871426
75073	chrX	+	1972	6	Antisense	novelGene_ENSMUSG00000059493.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	61	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGACAGCTGCAAGACAA	NA	False	NA	NA	False	NA	NA	NA	160624876	160658379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_160626183_160627169_160627298_160630015_160630213_160632472_160632534_160654464_160654597_160658231
75074	chr11	-	946	6	NNC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-1006	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	221.691136493997	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTATCTTCCCAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	6569036	6566420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_6566715_6567313_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996
75076	chr7	-	717	2	FSM	ENSMUSG00000019734.17	ENSMUST00000145034.3	455	2	-269	7	-269	-7	multi-exon	FALSE	canonical	3	43	junction_1	0	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGCCGCTTTGCGTTTTG	7391	False	NA	NA	False	NA	NA	NA	3670151	3668796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_3669180_3669817
75079	chr2	-	392	1	Intergenic	novelGene_2786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAACACCAAGGCAAGAA	NA	False	NA	NA	False	NA	NA	NA	166839174	166838782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_166838800_166839200
75080	chr17	+	699	1	NIC	ENSMUSG00000024038.18	novel	493	3	NA	NA	2	-6360	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTGTAGGGAGATAATT	NA	False	NA	NA	False	NA	NA	NA	31739160	31739859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_31739200_31739900
75081	chr4	+	728	1	Intergenic	novelGene_2173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTGTAGCTGTACAGAT	6687	False	NA	NA	False	NA	NA	NA	152197204	152197932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_152197200_152197900
75082	chr19	+	690	4	FSM	ENSMUSG00000056612.8	ENSMUST00000070850.8	999	4	286	23	-4	-20	multi-exon	FALSE	canonical	3	3100	junction_3	78.5295415043848	452	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGCCTTTGGAGCAGC	1866	False	NA	NA	False	NA	NA	NA	6952621	6954669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6952875_6953911_6953996_6954225_6954259_6954349
75083	chr3	-	642	4	NNC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	3	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.142135623731	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATAAAGTTCAGATGAG	7131	False	NA	NA	False	NA	NA	NA	88280047	88275949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88276188_88276401_88276481_88276779_88276916_88279858
75084	chr4	-	571	4	NNC	ENSMUSG00000028378.7	novel	2296	10	NA	NA	8953	-1078	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	197.518494211442	1	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGTGATAGAGAATGAAAT	8958	False	NA	NA	False	NA	NA	NA	58978166	58966516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58966740_58973595_58973669_58975856_58975979_58978013
75086	chr8	+	1139	1	ISM	ENSMUSG00000056019.13	ENSMUST00000188685.7	7186	4	9700	2870	4455	1945	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACATAAGTCATGAGAAG	NA	False	NA	NA	False	NA	NA	NA	72645562	72646701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_72645600_72646700
75088	chr2	-	854	2	NNC	ENSMUSG00000086007.2	novel	506	3	NA	NA	34	-16407	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATTGACTCCTTGGTAGT	NA	False	NA	NA	False	NA	NA	NA	51328763	51327468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_51328273_51328713
75090	chr9	-	916	1	Intergenic	novelGene_1046	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGACCAGTCTCCAAGTGT	NA	False	NA	NA	False	NA	NA	NA	55454691	55453775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_55453800_55454700
75091	chrX	+	2055	1	Intergenic	novelGene_3975	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAATAACAACAAGATTTGG	NA	False	NA	NA	False	NA	NA	NA	92353614	92355669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_92353600_92355700
75092	chr15	-	424	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	20	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2421.15689031091	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGAGCTCCTTTTGAAAA	381	False	NA	NA	False	NA	NA	NA	34443348	34440671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_34440751_34441382_34441511_34442780_34442927_34443170_34443224_34443330
75093	chr17	+	793	1	NIC	ENSMUSG00000024186.16	novel	2086	17	NA	NA	2648	-33	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCATTTTCACAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	26429463	26430256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26429500_26430300
75094	chr8	+	300	3	NNC	ENSMUSG00000031848.16	novel	365	4	NA	NA	-1111	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	1851	12	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGAGCCAGCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	71129203	71131395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71129247_71130427_71130470_71131180
75095	chr5	-	892	1	Antisense	novelGene_ENSMUSG00000004455.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCACAGGGCAGCCTCTG	NA	False	NA	NA	False	NA	NA	NA	122310216	122309324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_122309300_122310200
75097	chrX	-	1125	1	Intergenic	novelGene_3935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTAACCATTGTGTAACA	NA	False	NA	NA	False	NA	NA	NA	59195476	59194351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_59194400_59195500
75099	chr2	-	1191	1	Intergenic	novelGene_2668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGCGGAAGTGCGCTGACC	2968	False	NA	NA	False	NA	NA	NA	90901961	90900770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_90900800_90902000
75101	chr16	+	460	2	Intergenic	novelGene_3841	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTCACAGACGCCACGCC	NA	False	NA	NA	False	NA	NA	NA	57231988	57427230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57232246_57427027
75102	chr6	+	552	5	NNC	ENSMUSG00000097048.8	novel	2099	4	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	46.0129057982649	154	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	NA	False	NA	NA	NA	86503270	86541431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86503344_86504872_86504957_86509174_86509290_86540413_86540520_86541257
75103	chr1	+	673	1	Intergenic	novelGene_399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGTTCCTACTTCTATA	8816	False	NA	NA	False	NA	NA	NA	86368481	86369154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_86368500_86369200
75104	chr5	-	642	1	Antisense	novelGene_ENSMUSG00000006143.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAAGAGGGCTCA	NA	False	NA	NA	False	NA	NA	NA	136090255	136089613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_136089600_136090300
75105	chr11	-	1331	2	Intergenic	novelGene_2207	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGTATACAGGCAAAACAT	21	True	NA	NA	False	NA	NA	NA	5837776	5834493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_5834605_5836556
75106	chr8	-	242	1	Intergenic	novelGene_1576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATGAATAAACCTTTTA	NA	False	NA	NA	False	NA	NA	NA	13268601	13268359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_13268400_13268600
75107	chr15	-	556	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72730	29	8511	-21	3prime_fragment	FALSE	canonical	3	216	junction_1	0	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAAACATTGGGAGCTT	NA	False	NA	NA	False	NA	NA	NA	39648136	39646121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_39646506_39647964
75108	chr8	-	455	2	Antisense	novelGene_ENSMUSG00000000738.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACCAGTGCACATTAAAT	1977	False	NA	NA	False	NA	NA	NA	123791943	123791364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_123791755_123791878
75109	chr10	+	1211	7	ISM	ENSMUSG00000069581.13	ENSMUST00000092368.10	2169	10	59	11921	59	7099	5prime_fragment	FALSE	canonical	0	0	junction_2	2.60874597374975	10	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTCCTGGTAAGG	NA	False	NA	NA	False	NA	NA	NA	77700515	77710934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_77700717_77702113_77702205_77703505_77703663_77705396_77705529_77706156_77706384_77708927_77709115_77710718
75110	chr14	-	779	1	Intergenic	novelGene_606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAATGTTTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	73057826	73057047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_73057000_73057800
75112	chr5	-	460	1	ISM	ENSMUSG00000029463.6	ENSMUST00000031419.6	1388	7	22	7303	22	-7303	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGGCGGCCTTGGGAACC	NA	False	NA	NA	False	NA	NA	NA	122510405	122509945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_122509900_122510400
75114	chr11	-	562	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	5	44	5	-43	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	2100	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATGAAGTAAATAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	6478774	6475634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
75116	chr2	-	795	1	NIC	ENSMUSG00000085741.9	novel	904	2	NA	NA	10	-7974	mono-exon	FALSE	NA	NA	NA	NA	NA	20	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAAGGGATATCACTAAA	NA	False	NA	NA	False	NA	NA	NA	156704804	156704009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_156704000_156704800
75117	chr8	+	1390	5	ISM	ENSMUSG00000000791.10	ENSMUST00000000808.8	2873	16	8421	4	3654	-4	3prime_fragment	FALSE	canonical	1	1	junction_3	3.08220700148449	6	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTGGCCGTCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	71269513	71274064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_71269684_71269855_71269991_71271968_71272066_71272325_71272408_71273158
75118	chr1	+	157	1	Intergenic	novelGene_337	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTTTTTTTTAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	13122128	13122285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_13122100_13122300
75119	chr10	+	1010	6	ISM	ENSMUSG00000035722.16	ENSMUST00000043866.8	6590	46	15976	-4	15976	0	3prime_fragment	FALSE	canonical	3	34	junction_1	12.1424873893284	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCACGGCTGAGTTTG	8529	False	NA	NA	False	NA	NA	NA	79849424	79851406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79849595_79849679_79849815_79850062_79850167_79850301_79850395_79850780_79851022_79851139
75123	chr1	-	576	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162866.7	475	5	-18	-83	-8	1	multi-exon	FALSE	canonical	3	52	junction_4	387.938461614726	185	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGCTATTACGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	184559472	184545873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559384
75124	chr13	+	1364	2	FSM	ENSMUSG00000086796.3	ENSMUST00000138447.2	1482	2	24	94	0	-94	multi-exon	FALSE	canonical	0	0	junction_1	0	5	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTCGTATTCCAGGAT	NA	False	NA	NA	False	NA	NA	NA	25089602	25091169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_25089692_25089894
75126	chr14	+	499	2	Antisense	novelGene_ENSMUSG00000115615.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	78	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCCAGTGAGCATGCGCT	NA	False	NA	NA	False	NA	NA	NA	75611344	75616291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_75611454_75615901
75127	chr7	+	611	1	Intergenic	novelGene_2930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	37717473	37718084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_37717500_37718100
75129	chr19	-	551	2	Antisense	novelGene_ENSMUSG00000099988.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	5	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATACGAGAAACTGTGG	NA	False	NA	NA	False	NA	NA	NA	53040302	53039178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_53039431_53040003
75130	chr11	+	568	4	ISM	ENSMUSG00000020376.18	ENSMUST00000054684.14	1415	8	62032	28	-6296	-23	3prime_fragment	FALSE	canonical	3	67	junction_3	111.682088487317	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTACCGTGTTGCTAA	NA	False	NA	NA	False	NA	NA	NA	49978204	49995557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_49978289_49984549_49984647_49986602_49986808_49995375
75132	chr13	-	1419	1	Antisense	novelGene_ENSMUSG00000042348.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGCAGCAGCGTCTCG	NA	False	NA	NA	False	NA	NA	NA	113932558	113931139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_113931100_113932600
75133	chr8	-	362	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	76	11	61	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	108166135	108165773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166100
75135	chr17	-	588	1	Intergenic	novelGene_265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAGAAAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53877856	53877268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_53877300_53877900
75136	chr10	+	825	6	NNC	ENSMUSG00000004931.12	novel	2106	11	NA	NA	15	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	91.0393321592376	1	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGGGAGGTGAGTGCTTG	1384	False	NA	NA	False	NA	NA	NA	81104069	81107657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81104154_81105148_81105296_81106764_81106948_81107029_81107117_81107198_81107361_81107495
75137	chr1	+	720	4	Fusion	ENSMUSG00000027520.17_ENSMUSG00000086730.3	novel	462	2	NA	NA	-97	-13753	multi-exon	FALSE	canonical	3	22	junction_2	6.59966329107444	12	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTAGTGTAACTCCAGT	NA	False	NA	NA	False	NA	NA	NA	63239769	63320428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925
75138	chr4	-	515	2	Intergenic	novelGene_2175	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_1	0	122	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCTTTGTTTGTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	152668185	152665277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_152665662_152668054
75139	chr13	+	983	1	Intergenic	novelGene_1467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATGC	6673	False	NA	NA	False	NA	NA	NA	73474021	73475004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_73474000_73475000
75140	chr4	+	674	1	FSM	ENSMUSG00000067261.5	ENSMUST00000087285.5	2324	1	1701	-51	1701	51	mono-exon	FALSE	NA	NA	NA	NA	NA	53	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTGTTTTAATTAGGT	NA	False	NA	NA	False	NA	NA	NA	99546236	99546910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_99546200_99546900
75141	chr17	-	272	4	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2256.0689016271	17	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCCACTTGTGTATGTT	NA	False	NA	NA	False	NA	NA	NA	27854214	27849397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849481_27850173_27850230_27853353_27853450_27854177
75142	chr19	+	745	3	FSM	ENSMUSG00000025202.9	ENSMUST00000237324.2	655	3	-92	2	-92	-2	multi-exon	FALSE	canonical	3	31	junction_1	4	84	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAAGCAGAAATTCTCCT	NA	False	NA	NA	False	NA	NA	NA	44226161	44230455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44226317_44226814_44227048_44230098
75143	chr2	-	1608	2	NIC	ENSMUSG00000036770.12	novel	1870	5	NA	NA	-412	-1	intron_retention	FALSE	canonical	1	1	junction_1	0	4	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTATGTGTATGGTGTT	NA	False	NA	NA	False	NA	NA	NA	25104075	25102220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25103596_25103842
75144	chr5	+	1304	1	ISM	ENSMUSG00000048271.15	ENSMUST00000059644.13	9510	19	100726	33	7242	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTCTGTCAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	28622900	28624204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_28622900_28624200
75145	chr4	+	949	3	FSM	ENSMUSG00000048772.16	ENSMUST00000062824.12	991	3	44	-2	44	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	61	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTATCTATCCTGGGGGC	NA	False	NA	NA	False	NA	NA	NA	117109191	117125779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_117109332_117123056_117123173_117125086
75146	chr7	+	842	3	ISM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	18	18167	-15	-13375	5prime_fragment	FALSE	canonical	3	89	junction_1	16.5	25	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTTTCTCAGAGACCAG	1045	False	NA	NA	False	NA	NA	NA	45084285	45087876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45084595_45085955_45086138_45087525
75149	chr8	-	746	2	FSM	ENSMUSG00000056155.7	ENSMUST00000210202.2	692	2	-34	-20	-34	-6	multi-exon	FALSE	canonical	3	14	junction_1	0	79	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGAGCATGTCTTGGGAC	NA	False	NA	NA	False	NA	NA	NA	84903215	84900367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84900602_84902703
75151	chr9	-	843	2	Intergenic	novelGene_1084	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	63	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATCTATACAAGTATC	NA	False	NA	NA	False	NA	NA	NA	59182470	59181503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_59182170_59182293
75154	chr6	+	722	4	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	37026	-9170	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11.6714276000077	3	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTTGTTCTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	53832753	53835998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_53833035_53834180_53834359_53835502_53835591_53835823
75155	chr17	+	717	3	FSM	ENSMUSG00000034482.3	ENSMUST00000037849.3	509	3	-26	-182	-26	182	multi-exon	TRUE	canonical	2	3	junction_1	2.5	41	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCGTCTCCTCTGATGG	6685	False	NA	NA	False	NA	NA	NA	35327228	35331149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35327397_35329642_35329808_35330765
75156	chr1	-	1881	1	Intergenic	novelGene_421	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	105	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTCAGACAGAAGTATAG	NA	False	NA	NA	False	NA	NA	NA	113888010	113886129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_113886100_113888000
75157	chr4	-	943	1	FSM	ENSMUSG00000078234.7	ENSMUST00000105031.4	7807	1	4534	2330	4534	-2330	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGAGAAATGTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	139690803	139689860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_139689900_139690800
75159	chr13	+	1181	1	Intergenic	novelGene_1323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACTTTCTCAATTGAG	181	False	NA	NA	False	NA	NA	NA	22050027	22051208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_22050000_22051200
75161	chr16	+	1059	1	Intergenic	novelGene_3656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGTGGGAAATTC	8219	False	NA	NA	False	NA	NA	NA	44539477	44540536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_44539500_44540500
75165	chr17	+	689	3	FSM	ENSMUSG00000024063.14	ENSMUST00000024857.14	3069	3	8	2372	8	230	multi-exon	FALSE	canonical	2	4	junction_1	4	56	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCGAGTCGGTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	73225307	73246570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_73225574_73228182_73228286_73246250
75167	chr13	+	1773	1	ISM	ENSMUSG00000045034.13	ENSMUST00000061594.13	4013	5	12343	1647	11581	-919	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTCATGTGGTCCACGT	5820	False	NA	NA	False	NA	NA	NA	92574746	92576519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_92574700_92576500
75168	chr4	+	888	1	Intergenic	novelGene_1907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCTCTCTCTCTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	99539243	99540131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_99539200_99540100
75169	chr1	+	899	5	FSM	ENSMUSG00000087247.4	ENSMUST00000133144.4	971	5	74	-2	74	2	multi-exon	FALSE	canonical	0	0	junction_1	0	4	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACGAAAAAAATTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	6429515	6464957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_6429739_6458796_6458851_6459663_6459745_6461263_6461341_6464493
75170	chr6	+	971	1	Antisense	novelGene_ENSMUSG00000038600.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATATGAAAATCTTAATG	NA	False	NA	NA	False	NA	NA	NA	38070070	38071041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_38070100_38071000
75174	chr4	-	1035	2	FSM	ENSMUSG00000041735.9	ENSMUST00000209924.2	789	2	-207	-39	-207	39	multi-exon	FALSE	canonical	1	1	junction_1	0	5	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTGGCTCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	144442082	144429721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_144430536_144441861
75175	chr10	-	1019	8	FSM	ENSMUSG00000043822.19	ENSMUST00000105352.2	989	8	-30	0	-30	0	multi-exon	TRUE	canonical	2	6	junction_5	4.16986271980755	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGCCTCCCCTCAGTA	NA	False	NA	NA	False	NA	NA	NA	80184276	80178572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
75177	chr12	+	1447	3	Antisense	novelGene_ENSMUSG00000112483.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGGCAGGGCGCGGAGC	NA	False	NA	NA	False	NA	NA	NA	46812193	46865718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_46813172_46863663_46863813_46865398
75178	chr16	+	345	2	ISM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	79616	2599	53429	-2599	3prime_fragment	FALSE	canonical	3	1485	junction_1	0	2	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTTACATAAAGCATCC	315	False	NA	NA	False	NA	NA	NA	34922413	34926948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_34922495_34926684
75179	chr2	+	699	5	FSM	ENSMUSG00000009876.14	ENSMUST00000010020.12	727	5	10	18	10	-15	multi-exon	FALSE	canonical	2	9	junction_4	3.69966214673719	67	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCTTGCAAACTCCC	NA	False	NA	NA	False	NA	NA	NA	152596102	152606939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152596145_152597074_152597160_152598929_152599095_152602557_152602690_152606664
75180	chr15	+	1062	6	NNC	ENSMUSG00000023033.15	novel	2565	15	NA	NA	-13	230	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	21.4102779057162	12	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATCATGGCCTCATGGAA	NA	False	NA	NA	False	NA	NA	NA	100834173	100857899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100834482_100853290_100853412_100854911_100855000_100855341_100855471_100857220_100857313_100857575
75182	chr11	-	625	3	FSM	ENSMUSG00000015542.18	ENSMUST00000134769.2	386	3	-56	-183	0	0	multi-exon	FALSE	canonical	2	2	junction_1	42.5	89	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGTTTGTTTAGGCCCT	NA	False	NA	NA	False	NA	NA	NA	115078158	115075620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115075943_115077574_115077664_115077944
75183	chr5	-	861	5	ISM	ENSMUSG00000032850.17	ENSMUST00000121369.8	4431	11	2088	41685	-107	1729	internal_fragment	FALSE	canonical	3	9	junction_3	5.67340285895511	4	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCTCCCAGCAGCTCTAC	NA	False	NA	NA	False	NA	NA	NA	118381093	118370491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_118370568_118372205_118372283_118375191_118375662_118380522_118380582_118380914
75184	chr4	+	834	6	NNC	ENSMUSG00000028309.15	novel	4154	21	NA	NA	8	68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	23.5406032208183	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGGATCTCTTATCCCG	-5	True	NA	NA	False	NA	NA	NA	49632073	49638770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_49632212_49632364_49632494_49633257_49633411_49637905_49638074_49638186_49638333_49638670
75186	chr5	-	583	1	NIC	ENSMUSG00000029711.14	novel	855	6	NA	NA	17	-49617	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCTACTGCCCCTTGAT	1817	False	NA	NA	False	NA	NA	NA	137531487	137530904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_137530900_137531500
75187	chr11	-	509	2	NNC	ENSMUSG00000086193.2	novel	440	2	NA	NA	16272	7	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	27	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTTATGGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	87922560	87902809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_87903159_87922400
75188	chr7	-	1152	2	ISM	ENSMUSG00000030733.11	ENSMUST00000206664.2	2909	10	4689	53	1815	-47	3prime_fragment	FALSE	canonical	3	321	junction_1	0	3	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTTTTAAACAAAATGGAAAA	NA	False	NA	NA	False	NA	NA	NA	126067551	126066223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126066946_126067121
75189	chrX	+	863	1	NIC	ENSMUSG00000087424.2	novel	853	3	NA	NA	2375	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATGTATTAAGCATTTC	NA	False	NA	NA	False	NA	NA	NA	12910664	12911527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_12910700_12911500
75190	chr11	-	587	1	NIC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	5	-8194	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACCAGAAGAGGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	40624238	40623651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_40623700_40624200
75191	chr5	+	756	7	FSM	ENSMUSG00000013936.13	ENSMUST00000014080.13	662	7	-97	3	-97	3	multi-exon	FALSE	canonical	3	15	junction_3	1.91485421551268	108	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGGTGACCATTGGCT	3508	False	NA	NA	False	NA	NA	NA	122238916	122244914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122239093_122239811_122239902_122240758_122240835_122241893_122241999_122242889_122242969_122243050_122243100_122244733
75192	chr4	+	1235	1	ISM	ENSMUSG00000028613.16	ENSMUST00000106731.4	7391	19	73439	3	14297	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGTTTCCTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	107732799	107734034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_107732800_107734000
75193	chr10	+	372	1	Intergenic	novelGene_3523	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGATCATTTTAGCATCTC	4614	False	NA	NA	False	NA	NA	NA	108166997	108167369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_108167000_108167400
75195	chr12	-	641	1	NIC	ENSMUSG00000091803.8	novel	2007	4	NA	NA	0	-4432	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACATTTTTCTTGGTGTGG	994	False	NA	NA	False	NA	NA	NA	81531888	81531247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_81531200_81531900
75197	chr14	+	525	4	ISM	ENSMUSG00000091898.9	ENSMUST00000169169.8	721	6	1827	19	1807	-19	3prime_fragment	FALSE	canonical	1	1	junction_1	0.471404520791032	27	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGCCTGGTATCTTGCT	NA	False	NA	NA	False	NA	NA	NA	30932095	30933667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30932164_30932520_30932636_30933236_30933374_30933462
75198	chr2	-	750	2	Antisense	novelGene_ENSMUSG00000027624.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGCAGGAGGGAGGTT	7867	False	NA	NA	False	NA	NA	NA	156385131	156384181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_156384822_156385021
75199	chr12	+	525	3	FSM	ENSMUSG00000064326.14	ENSMUST00000109755.5	333	3	-91	-101	-91	-7	multi-exon	FALSE	canonical	3	90	junction_1	805	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCACAAGGACTCCCTC	7052	False	NA	NA	False	NA	NA	NA	112611309	112615572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_112611519_112614258_112614416_112615413
75200	chr7	+	1105	1	Intergenic	novelGene_2998	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATACGAGGAACACTGAG	NA	False	NA	NA	False	NA	NA	NA	95867398	95868503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_95867400_95868500
75201	chr7	-	445	2	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	10	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	21	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGGTCTCTGGAGTACTT	NA	False	NA	NA	False	NA	NA	NA	19005732	18990857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_18991201_19005630
75202	chr1	+	2037	4	Antisense	novelGene_ENSMUSG00000040113.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	40	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAACAGACTGCATGAGAT	NA	False	NA	NA	False	NA	NA	NA	163529657	163552884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_163530864_163531576_163531820_163544650_163544829_163552474
75203	chr10	-	557	2	FSM	ENSMUSG00000097327.8	ENSMUST00000181614.2	548	2	-5	-4	-5	4	multi-exon	FALSE	canonical	3	41	junction_1	0	154	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCCTTGGTTTTATCA	NA	False	NA	NA	False	NA	NA	NA	22024727	22020196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_22020414_22024387
75204	chr14	+	393	2	FSM	ENSMUSG00000076839.4	ENSMUST00000103651.4	331	2	-69	7	-69	-7	multi-exon	FALSE	canonical	0	0	junction_1	0	1	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAACCACAGTGCTCCAC	5458	False	NA	NA	False	NA	NA	NA	53782401	53782975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_53782523_53782703
75205	chr11	+	1172	1	Intergenic	novelGene_2266	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	81	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATCTCATTGTGCTTTTAC	NA	False	NA	NA	False	NA	NA	NA	51126334	51127506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_51126300_51127500
75206	ERCC-00046	+	506	1	FSM	ERCC-00046A	DQ516748	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3122	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00046_+_0_500
75207	chr11	+	1756	1	FSM	ENSMUSG00000045176.4	ENSMUST00000051888.4	1862	1	106	0	106	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGAGCCTGTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	68950648	68952404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68950600_68952400
75208	chr15	-	809	3	ISM	ENSMUSG00000050439.8	ENSMUST00000229110.2	2236	7	9	82283	9	-82283	5prime_fragment	FALSE	canonical	3	10	junction_1	0	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGCAGGTCTGTGCAGT	NA	False	NA	NA	False	NA	NA	NA	80449348	80418723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_80418949_80444204_80444702_80449261
75211	chr7	+	455	4	NNC	ENSMUSG00000030795.19	novel	1102	9	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	396.68879490099	110	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTCTGTTTCCCCCAG	1180	False	NA	NA	False	NA	NA	NA	127566658	127581199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_127566750_127568733_127568759_127568888_127569044_127581015
75212	chr11	+	903	1	Intergenic	novelGene_2524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGTTTTTTTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	114607427	114608330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_114607400_114608300
75213	chr8	+	404	1	FSM	ENSMUSG00000109941.2	ENSMUST00000210390.2	1326	1	860	62	860	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	63	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACATCTGTTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	111783830	111784234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_111783800_111784200
75216	chr18	+	1217	1	Intergenic	novelGene_4562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTCACACAATTTGAAAC	NA	False	NA	NA	False	NA	NA	NA	69976506	69977723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_69976500_69977700
75217	chrX	-	1695	1	Intergenic	novelGene_3968	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAGGAGGAAGGATCAGA	NA	False	NA	NA	False	NA	NA	NA	84779059	84777364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_84777400_84779100
75218	chr4	+	392	1	ISM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	21230	134	21230	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTTTTCTCATGCTTT	734	False	NA	NA	False	NA	NA	NA	46472131	46472523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_46472100_46472500
75219	chr3	+	1516	1	ISM	ENSMUSG00000068747.15	ENSMUST00000102632.7	6796	20	75902	3	4526	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACCTACTAAGATGAGTAA	NA	False	NA	NA	False	NA	NA	NA	108267308	108268824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_108267300_108268800
75220	chrX	+	489	2	FSM	ENSMUSG00000095110.2	ENSMUST00000088134.4	577	2	69	19	69	-19	multi-exon	FALSE	canonical	1	1	junction_1	0	27	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCAATCTGATATGAAAAC	NA	False	NA	NA	False	NA	NA	NA	92199828	92200460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_92199990_92200132
75221	chr17	+	754	3	Intergenic	novelGene_299	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1	6	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGAGTTGTGGCGGTTT	NA	False	NA	NA	False	NA	NA	NA	80540175	80561962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_80540460_80549334_80549558_80561715
75222	chr8	-	464	4	FSM	ENSMUSG00000110670.2	ENSMUST00000212930.2	1110	4	482	164	482	-164	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	5	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGTTGTTTCAGCCATG	656	False	NA	NA	False	NA	NA	NA	94153489	94149932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_94150064_94150168_94150242_94152733_94152830_94153325
75223	chr7	+	1126	1	ISM	ENSMUSG00000074141.14	ENSMUST00000118125.9	2275	9	23283	0	481	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTCACTTCCCTCC	4209	False	NA	NA	False	NA	NA	NA	44489102	44490228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44489100_44490200
75224	chr2	-	1733	1	Intergenic	novelGene_2647	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAGCATTCAGCCATACT	NA	False	NA	NA	False	NA	NA	NA	70929278	70927545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_70927500_70929300
75225	chr7	-	893	2	ISM	ENSMUSG00000030929.18	ENSMUST00000139192.8	3286	7	-6	7810	2	-5160	5prime_fragment	FALSE	canonical	3	81	junction_1	0	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATTTTTATTGCTAC	NA	False	NA	NA	False	NA	NA	NA	119393188	119390876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_119391722_119393140
75229	chr13	-	649	5	ISM	ENSMUSG00000060147.16	ENSMUST00000171034.8	930	7	31	6522	4	2	5prime_fragment	FALSE	canonical	3	10	junction_4	174.182913915229	7	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAACACAGAGTTTCTCTA	NA	False	NA	NA	False	NA	NA	NA	34186746	34109294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_34109413_34114007_34114161_34115454_34115630_34180225_34180335_34186652
75231	chr10	-	571	3	FSM	ENSMUSG00000063320.12	ENSMUST00000185168.8	469	3	-18	-84	-18	-7	multi-exon	FALSE	canonical	3	100	junction_2	174.5	280	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATAGTCTTACTATACA	NA	False	NA	NA	False	NA	NA	NA	82459080	82455691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_82456052_82458541_82458659_82458986
75232	chr9	+	1121	1	Antisense	novelGene_ENSMUSG00000032064.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTAAGTTCCCGCGGGTC	NA	False	NA	NA	False	NA	NA	NA	50637990	50639111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_50638000_50639100
75236	chr4	-	899	7	FSM	ENSMUSG00000038172.15	ENSMUST00000030205.14	842	7	-71	14	-5	-14	multi-exon	FALSE	canonical	2	10	junction_1	86.0905531015647	85	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTCTAAAACATGTTAATG	NA	False	NA	NA	False	NA	NA	NA	83242497	83177448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_83177704_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
75237	chr15	+	1011	5	NNC	ENSMUSG00000023033.15	novel	11232	26	NA	NA	-13	271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	27.105119442644	2	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCATTCCACTGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	100834173	100857940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100834482_100853290_100853412_100854911_100855000_100855341_100855471_100857575
75238	chr11	+	764	6	ISM	ENSMUSG00000020782.19	ENSMUST00000177736.8	3612	26	24	10139	24	163	5prime_fragment	FALSE	canonical	3	674	junction_1	80.564508314766	22	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAGTTGCGTCTCAGTC	6833	False	NA	NA	False	NA	NA	NA	115714907	115736465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199
75239	chr16	+	1764	9	FSM	ENSMUSG00000040605.8	ENSMUST00000047275.8	7646	9	49	5833	49	294	multi-exon	FALSE	canonical	0	0	junction_3	0.968245836551854	2	35	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCATTGGGCTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	97157990	97238303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_97158302_97200833_97200923_97209476_97209694_97213257_97213387_97214548_97214684_97216278_97216381_97223049_97223200_97225689_97225859_97237841
75242	chr11	-	854	3	ISM	ENSMUSG00000001029.16	ENSMUST00000001055.15	1282	4	1918	0	-62	0	3prime_fragment	FALSE	canonical	2	2	junction_2	1.5	7	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTGCCCGCCATGACTG	1277	False	NA	NA	False	NA	NA	NA	106271689	106268481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106268821_106269471_106269790_106271492
75243	chr5	+	1432	1	Intergenic	novelGene_859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGTGTACTTACAGCGAG	NA	False	NA	NA	False	NA	NA	NA	129311260	129312692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_129311300_129312700
75244	chr2	-	1326	1	NIC	ENSMUSG00000075020.7	novel	1032	3	NA	NA	59	-16894	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTCCTCTGTTACT	1618	False	NA	NA	False	NA	NA	NA	94009201	94007875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_94007900_94009200
75247	chr2	+	784	8	NIC	ENSMUSG00000075302.11	novel	1659	12	NA	NA	12986	-27	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.832993127835043	7	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCCAAATATAAAGTAGA	NA	False	NA	NA	False	NA	NA	NA	70352826	70371201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_70352852_70353674_70353712_70357776_70357870_70362019_70362169_70364585_70364768_70366488_70366547_70370021_70370094_70371033
75248	chr1	-	1564	1	Antisense	novelGene_ENSMUSG00000026554.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGCGCCTGCGCCTGCGCC	NA	False	NA	NA	False	NA	NA	NA	171977263	171975699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171975700_171977300
75250	chr19	-	984	4	FSM	ENSMUSG00000040913.12	ENSMUST00000162879.8	482	4	74	-576	74	-11	multi-exon	FALSE	canonical	3	67	junction_2	4.98887651569859	38	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACAAATCTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	45580207	45566703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_45567365_45567559_45567702_45568091_45568233_45580167
75252	chr4	+	1029	1	Intergenic	novelGene_1983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGCATCGAGTAATGCTG	NA	False	NA	NA	False	NA	NA	NA	136058512	136059541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_136058500_136059500
75253	chr11	+	333	4	NIC	ENSMUSG00000086003.8	novel	695	6	NA	NA	2971	-17	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	66.6949939817242	46	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTACTTTATGCGTATTA	NA	False	NA	NA	False	NA	NA	NA	94029456	94046585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_94029490_94042163_94042239_94046281_94046324_94046402
75256	chr6	-	659	1	Antisense	novelGene_ENSMUSG00000085238.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAGAATTTAAAATGAAG	NA	False	NA	NA	False	NA	NA	NA	146566135	146565476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_146565500_146566100
75257	chr9	-	770	2	Genic_Genomic	ENSMUSG00000111088.2	novel	818	1	NA	NA	111	14020	multi-exon	FALSE	canonical	0	0	junction_1	0	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CATAAAAGAATAAAATAGAA	NA	False	NA	NA	False	NA	NA	NA	44290636	44275909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_44276105_44290061
75258	chr14	+	1448	1	ISM	ENSMUSG00000021990.17	ENSMUST00000160973.8	7467	13	56613	72246	-1119	895	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAAGCCCCAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	60928304	60929752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_60928300_60929800
75259	chr3	-	473	1	Intergenic	novelGene_3150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTAATCCTGTCCTGGAG	NA	False	NA	NA	False	NA	NA	NA	89059760	89059287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_89059300_89059800
75260	chr11	-	319	1	Intergenic	novelGene_2254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTTTTCACACAGCAATA	NA	False	NA	NA	False	NA	NA	NA	40582639	40582320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_40582300_40582600
75263	chr1	+	626	3	FSM	ENSMUSG00000026201.13	ENSMUST00000123825.8	636	3	8	2	2	-2	multi-exon	FALSE	canonical	3	65	junction_1	98.5	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACATGCCCTGGTTTGGCC	NA	False	NA	NA	False	NA	NA	NA	75187525	75188876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75187669_75187883_75188059_75188568
75264	chr14	-	711	2	FSM	ENSMUSG00000052435.8	ENSMUST00000064290.8	1241	2	523	7	523	-7	multi-exon	TRUE	canonical	0	0	junction_1	0	3	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGAAGCTGTTCACTGG	9609	False	NA	NA	False	NA	NA	NA	54949108	54947823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54948332_54948905
75265	chr7	-	989	4	NIC	ENSMUSG00000015133.18	novel	1559	3	NA	NA	-12	173	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	0.471404520791032	11	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTGTTTGCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	66038067	65991244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_65991755_65992509_65992674_66031199_66031415_66037967
75266	ERCC-00112	+	1120	1	FSM	ERCC-00112A	DQ459422	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00112_+_0_1100
75267	chr18	-	568	2	ISM	ENSMUSG00000097080.9	ENSMUST00000236219.2	834	6	8	1746	3	-1734	intron_retention	FALSE	canonical	0	0	junction_1	0	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCCTGGGTTCCACT	NA	False	NA	NA	False	NA	NA	NA	38383248	38373920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_38374007_38382766
75270	chr11	-	1208	5	ISM	ENSMUSG00000020160.19	ENSMUST00000068264.14	3196	13	-8	132157	3	-3035	5prime_fragment	FALSE	canonical	0	0	junction_1	0.82915619758885	2	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAGAAGGTAAATTCCTG	NA	False	NA	NA	False	NA	NA	NA	18968966	18962818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_18962861_18963631_18963683_18964249_18964392_18966132_18966360_18968220
75271	chrX	-	1425	1	Intergenic	novelGene_3976	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTCTCTGTATGAGT	NA	False	NA	NA	False	NA	NA	NA	92540586	92539161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_92539200_92540600
75273	chr10	-	1431	1	Intergenic	novelGene_3464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAATAAGCTTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	68865741	68864310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_68864300_68865700
75274	chr12	-	387	3	FSM	ENSMUSG00000021176.7	ENSMUST00000221801.2	3131	3	43	2701	-18	44	multi-exon	FALSE	canonical	3	83	junction_2	4.5	99	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGTAGTTGGTATGTCA	NA	False	NA	NA	False	NA	NA	NA	99849719	99844549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_99844662_99849020_99849117_99849540
75275	chr10	-	794	5	ISM	ENSMUSG00000019863.8	ENSMUST00000154405.2	2290	8	45	7872	-34	-108	5prime_fragment	FALSE	canonical	3	75	junction_2	10.2316909648406	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACATTAAAAACTTAACT	NA	False	NA	NA	False	NA	NA	NA	43777696	43764781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
75276	chr17	+	1122	2	FSM	ENSMUSG00000003541.7	ENSMUST00000003635.7	1131	2	2	7	2	-7	multi-exon	FALSE	canonical	3	7	junction_1	0	124	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCAGTTCTCGAAGTGT	NA	False	NA	NA	False	NA	NA	NA	36132577	36133808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36132821_36132929
75277	SIRV12002	+	760	1	FSM	SIRV12002A	SIRV12002	11999	1	10	11229	10	-11229	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAGCAAGAGCCGCGTCA	NA	False	NA	NA	False	NA	NA	NA	10	770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV12002_+_0_800
75278	chr6	-	395	1	ISM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	18879	11	17009	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	16	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTCCATTGTCTTAC	NA	False	NA	NA	False	NA	NA	NA	122295095	122294700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122294700_122295100
75279	chr1	+	569	1	Intergenic	novelGene_435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGGTGGGGTGACAAG	NA	False	NA	NA	False	NA	NA	NA	118913707	118914276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_118913700_118914300
75280	chr1	+	865	1	Intergenic	novelGene_434	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTCAGGAGGAGACCCC	NA	False	NA	NA	False	NA	NA	NA	118912921	118913786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_118912900_118913800
75282	chr3	-	1424	4	NNC	ENSMUSG00000097852.6	novel	768	6	NA	NA	-130	-33245	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	5	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTATCTGTTATTATCG	NA	False	NA	NA	False	NA	NA	NA	122717895	122709485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_122710446_122713327_122713455_122716892_122717046_122717711
75284	chr6	+	658	2	FSM	ENSMUSG00000045709.12	ENSMUST00000141679.3	1003	2	97	248	-30	0	multi-exon	FALSE	canonical	3	4	junction_1	0	20	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGTTTGTGTGAGTCA	0	True	NA	NA	False	NA	NA	NA	29985330	29993529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_29985466_29993006
75285	chr7	+	566	5	FSM	ENSMUSG00000037772.14	ENSMUST00000210803.2	590	5	22	2	21	-2	multi-exon	FALSE	canonical	3	4	junction_1	637.011136087902	79	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGTGGACACTTTGCC	NA	False	NA	NA	False	NA	NA	NA	142086919	142094482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142086979_142088741_142088865_142089806_142089890_142091003_142091078_142094255
75286	chr15	+	162	1	Intergenic	novelGene_3371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTTTTTTAAAAATTAAAA	3833	False	NA	NA	False	NA	NA	NA	100160809	100160971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_100160800_100161000
75287	chr7	-	390	3	NNC	ENSMUSG00000046792.9	novel	576	3	NA	NA	-302	-4	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	1.5	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACATTGCTTCAGTGTT	9808	False	NA	NA	False	NA	NA	NA	6146146	6145405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_6145619_6145705_6145797_6146060
75289	chr6	+	1192	1	NIC	ENSMUSG00000033542.14	novel	5469	15	NA	NA	1163	1221	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCGGAGTCATTAGATTAGA	NA	False	NA	NA	False	NA	NA	NA	43260978	43262170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_43261000_43262200
75290	chr5	+	1332	7	Antisense	novelGene_ENSMUSG00000029209.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCCAGCAACCCGCCAGC	NA	False	NA	NA	False	NA	NA	NA	69734308	69749596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_69734783_69735318_69735496_69736849_69737035_69742315_69742499_69743806_69743909_69747002_69747169_69749551
75291	chr8	+	1099	1	Intergenic	novelGene_1666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAACACGAACAAATACTTC	NA	False	NA	NA	False	NA	NA	NA	73302375	73303474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_73302400_73303500
75293	chrUn_MU069435v1	+	296	1	Intergenic	novelGene_4774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCGAAAGTGTCCCGTCC	NA	False	NA	NA	False	NA	NA	NA	1350	1646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_1400_1600
75294	chr9	-	330	1	ISM	ENSMUSG00000042444.11	ENSMUST00000049031.6	8081	9	57826	5	57799	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAACATTCTCTCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	70506630	70506300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_70506300_70506600
75297	chr2	+	424	2	Antisense	novelGene_ENSMUSG00000057182.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAGGAATGATGTATGTG	NA	False	NA	NA	False	NA	NA	NA	65232633	65292131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_65232686_65291759
75298	chr19	-	965	1	Antisense	novelGene_ENSMUSG00000117768.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGGCTCGCGAGTTTACG	9724	False	NA	NA	False	NA	NA	NA	53380275	53379310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_53379300_53380300
75299	chr17	-	1078	2	FSM	ENSMUSG00000097676.2	ENSMUST00000180785.2	1055	2	-70	47	-70	-47	multi-exon	FALSE	canonical	2	2	junction_1	0	3	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAACACTCATGCACATAA	NA	False	NA	NA	False	NA	NA	NA	88467259	88453558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_88454488_88467110
75300	chr2	+	264	2	Intergenic	novelGene_2563	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	76	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGCTGCAACCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	11413732	11426236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_11413859_11426098
75301	chr12	+	718	4	NNC	ENSMUSG00000087075.3	novel	670	4	NA	NA	-4783	-49	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	1.24721912892465	11	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTGGCTACGGGCA	NA	False	NA	NA	False	NA	NA	NA	111368459	111378475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111368616_111374958_111375046_111376620_111376778_111378157
75305	chr4	+	827	3	ISM	ENSMUSG00000035969.16	ENSMUST00000173682.8	4256	11	11380	-434	2485	-5	3prime_fragment	FALSE	canonical	3	25	junction_2	9.5	18	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGCCATTTTCTTTGTG	9914	False	NA	NA	False	NA	NA	NA	43426075	43427083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_43426129_43426227_43426366_43426447
75309	chr4	+	674	3	NNC	ENSMUSG00000086665.2	novel	404	2	NA	NA	-779	118	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0.5	7	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGGCCCTGGGATTTT	NA	False	NA	NA	False	NA	NA	NA	150132690	150141551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150132829_150133455_150133723_150141282
75310	chr7	-	1294	2	Genic_Genomic	ENSMUSG00000030553.4	novel	677	5	NA	NA	4588	-21275	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCCTTTTGTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	67909393	67907961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_67908841_67908978
75311	chr8	+	1468	1	ISM	ENSMUSG00000055675.7	ENSMUST00000069399.7	6973	2	20832	9	-533	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAAATGTTGCTGTGT	4135	False	NA	NA	False	NA	NA	NA	15081856	15083324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_15081900_15083300
75312	chr1	+	705	5	NNC	ENSMUSG00000018196.19	novel	3337	4	NA	NA	25	-12	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	256.388864812807	8	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGACCCTTCATCTCCC	NA	False	NA	NA	False	NA	NA	NA	143615408	143622500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_143615497_143617385_143617450_143620784_143620962_143621711_143621833_143622245
75315	chr4	-	1054	5	NIC	ENSMUSG00000085562.8	novel	3623	7	NA	NA	15	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	1.4790199457749	24	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTATCTGTGGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	125816088	125784212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_125784527_125785276_125785384_125786974_125787070_125812280_125812600_125815869
75316	chr5	+	796	4	FSM	ENSMUSG00000097908.8	ENSMUST00000197095.5	617	4	-183	4	-12	-4	multi-exon	FALSE	canonical	3	66	junction_3	17.326921891156	272	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTCTCTTCATCTATG	NA	False	NA	NA	False	NA	NA	NA	136948022	136962535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962315
75317	chr2	+	1586	5	ISM	ENSMUSG00000032724.6	ENSMUST00000076212.4	4558	17	145151	39	-3574	-39	3prime_fragment	FALSE	canonical	2	11	junction_1	2.38484800354236	9	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTATGGTTTTATCAACAA	NA	False	NA	NA	False	NA	NA	NA	103541805	103548729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_103541893_103542731_103542823_103545847_103545917_103546384_103546499_103547504
75318	chr14	-	489	3	ISM	ENSMUSG00000021791.8	ENSMUST00000022316.6	818	4	6818	10	6818	-10	3prime_fragment	FALSE	canonical	2	5	junction_1	0	5	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCATCAAGCCAGTGAAG	NA	False	NA	NA	False	NA	NA	NA	40784347	40771083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_40771408_40783851_40783975_40784305
75319	chr3	+	450	3	FSM	ENSMUSG00000001025.9	ENSMUST00000001051.9	731	3	270	11	-2	-11	multi-exon	FALSE	canonical	3	31	junction_2	1	242	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTATGCCTACTCATGTG	5467	False	NA	NA	False	NA	NA	NA	90520458	90521710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90520534_90521049_90521212_90521497
75320	chr4	+	334	1	FSM	ENSMUSG00000070803.7	ENSMUST00000094814.6	1249	1	884	31	884	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCAAAATAAAACTGGG	7003	False	NA	NA	False	NA	NA	NA	120524652	120524986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_120524700_120525000
75321	chr13	-	505	1	FSM	ENSMUSG00000080999.2	ENSMUST00000118168.2	334	1	-16	-155	-16	155	mono-exon	FALSE	NA	NA	NA	NA	NA	13	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCCAGTTTTCTACGAA	3719	False	NA	NA	False	NA	NA	NA	23930498	23929993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23930000_23930500
75322	chr9	+	1421	1	Antisense	novelGene_ENSMUSG00000035941.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTTCAGAATCTCAGAC	NA	False	NA	NA	False	NA	NA	NA	85599034	85600455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_85599000_85600500
75323	chr2	+	1153	1	Intergenic	novelGene_2833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCTAGAGTCCACTGAAT	NA	False	NA	NA	False	NA	NA	NA	174258262	174259415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_174258300_174259400
75327	chr1	-	433	1	NIC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	7761	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCAGGTCTTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	4847028	4846595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_4846600_4847000
75328	chr8	-	851	1	Antisense	novelGene_ENSMUSG00000110129.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATAAGAGTACCAGGGTT	NA	False	NA	NA	False	NA	NA	NA	22901323	22900472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_22900500_22901300
75329	SIRV6	-	148	1	FSM	SIRV6C	SIRV618	189	1	42	-1	42	1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGTCTAGCTGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	2505	2357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_-_2400_2500
75330	chr4	+	678	5	Intergenic	novelGene_2170	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	0.433012701892219	22	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGGCCCGCATACATG	9396	False	NA	NA	False	NA	NA	NA	150817193	150823623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_150817312_150818847_150818958_150819681_150819780_150820690_150820782_150823362
75331	chr12	-	807	3	Antisense	novelGene_ENSMUSG00000021102.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	14	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACTCCAGGGCTTACAGA	6011	False	NA	NA	False	NA	NA	NA	105007115	104998931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_104999014_104999065_104999207_105006531
75332	chr11	+	819	2	FSM	ENSMUSG00000053783.6	ENSMUST00000066408.6	921	2	93	9	93	-9	multi-exon	FALSE	canonical	2	5	junction_1	0	18	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCTGAACCTGAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	75890830	75894386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75891093_75893829
75334	chr1	+	704	3	NNC	ENSMUSG00000102531.2	novel	566	2	NA	NA	-4515	-24	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1.5	23	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAAAATAAACTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	35914410	35920176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_35914437_35918789_35919054_35919762
75336	chr3	-	492	3	Antisense	novelGene_ENSMUSG00000000794.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	0.5	26	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAGAAAAGAAACACGTC	NA	False	NA	NA	False	NA	NA	NA	89586740	89573984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89574143_89574242_89574446_89586609
75337	chr7	-	840	3	NNC	ENSMUSG00000110424.2	novel	605	3	NA	NA	-37	-477	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	10	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCTAAGGGGTTTATGTT	NA	False	NA	NA	False	NA	NA	NA	110721928	110717356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110717867_110720114_110720231_110721714
75338	chr17	-	576	5	FSM	ENSMUSG00000036315.14	ENSMUST00000174466.2	584	5	95	-87	18	0	multi-exon	FALSE	canonical	3	45	junction_4	268.393833759272	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGATGTTATGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	37269356	37265247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269122_37269269
75340	chr15	-	347	2	FSM	ENSMUSG00000116097.2	ENSMUST00000229702.2	394	2	44	3	44	-3	multi-exon	FALSE	canonical	3	23	junction_1	0	140	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCGCTGTGGTCGGAG	2897	False	NA	NA	False	NA	NA	NA	78465772	78458613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_78458873_78465684
75341	chr5	+	845	2	NNC	ENSMUSG00000029205.13	novel	550	2	NA	NA	-26	-37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAAAATCAATAAAT	NA	False	NA	NA	False	NA	NA	NA	66133212	66134632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_66133474_66134048
75342	chr8	+	700	1	ISM	ENSMUSG00000110622.2	ENSMUST00000212436.2	4584	4	13494	0	13494	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGTCATATATCTTGGG	NA	False	NA	NA	False	NA	NA	NA	71169599	71170299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_71169600_71170300
75345	chr5	-	413	1	Genic_Genomic	ENSMUSG00000042184.12	novel	NA	NA	NA	NA	3951	189	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTGCTTTGGTTTATGA	5707	False	NA	NA	False	NA	NA	NA	113838558	113838145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_113838100_113838600
75346	chr1	-	432	3	Intergenic	novelGene_349	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_2	32	309	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGTGAGATCTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	21326173	21323504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_21323669_21324392_21324598_21326110
75347	chr12	+	557	3	FSM	ENSMUSG00000097121.3	ENSMUST00000221614.2	706	3	142	7	-13	-3	multi-exon	FALSE	canonical	2	9	junction_1	1	78	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTGTTTGTTTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	101050078	101054435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_101050285_101050542_101050759_101054300
75349	chr7	+	1299	8	NIC	ENSMUSG00000062044.17	novel	4997	15	NA	NA	-324	792	intron_retention	FALSE	canonical	0	0	junction_3	1.12485826771597	5	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGCAGCCGTGGCCTCA	1893	False	NA	NA	False	NA	NA	NA	45436847	45442802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45437179_45437327_45437447_45440298_45440387_45440718_45440868_45441734_45441820_45441900_45442023_45442114_45442265_45442547
75350	chr11	-	719	4	Intergenic	novelGene_2535	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_3	0.816496580927726	35	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCCTCTCTTCAGGAGG	NA	False	NA	NA	False	NA	NA	NA	117302619	117298487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_117298870_117299291_117299429_117301886_117302033_117302565
75351	chr17	+	1658	1	NIC	ENSMUSG00000014763.9	novel	4420	11	NA	NA	18	-10930	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAATAATAACTTAATA	NA	False	NA	NA	False	NA	NA	NA	15616527	15618185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15616500_15618200
75352	chr8	-	316	1	Intergenic	novelGene_1582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTTTTGCCCTTTAATA	6106	False	NA	NA	False	NA	NA	NA	18896166	18895850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_18895800_18896200
75355	chr10	+	1134	8	Antisense	novelGene_ENSMUSG00000020014.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATTCCTAGCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	92857552	92871339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_92857928_92860871_92860999_92861314_92861400_92864453_92864580_92864900_92865031_92868744_92868832_92870538_92870684_92871280
75356	chr9	+	893	1	Intergenic	novelGene_1179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAAATGTAATGATGA	937	False	NA	NA	False	NA	NA	NA	119797578	119798471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_119797600_119798500
75357	chr17	-	528	1	Intergenic	novelGene_7	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCAGGTTGGGAAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	6760567	6760039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_6760000_6760600
75358	chr5	+	513	4	NIC	ENSMUSG00000029516.20	novel	651	6	NA	NA	-14	5	combination_of_known_junctions	FALSE	canonical	2	7	junction_3	25.1042271783503	18	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGTGTTTCAGTGTGGG	8467	False	NA	NA	False	NA	NA	NA	115983322	115992749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115983361_115984342_115984526_115989210_115989353_115992599
75363	chr17	-	1410	8	NNC	ENSMUSG00000037446.15	novel	1851	14	NA	NA	88	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.64130361329658	9	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACGCATCGGTAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	28581806	28570496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28570977_28572656_28572829_28575137_28575237_28575312_28575425_28577523_28577637_28578035_28578207_28581343_28581469_28581668
75364	chr13	-	919	1	Intergenic	novelGene_1533	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGAAATGTATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	109930708	109929789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_109929800_109930700
75365	ERCC-00043	+	999	1	FSM	ERCC-00043A	DQ516787	1007	1	0	8	0	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGGTT	NA	False	NA	NA	False	NA	NA	NA	0	999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00043_+_0_1000
75366	chr8	+	532	5	NIC	ENSMUSG00000097248.10	novel	447	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	86.1434124004848	176	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	230	False	NA	NA	False	NA	NA	NA	88199764	88252182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_88199859_88240436_88240525_88248363_88248442_88250923_88251056_88252042
75367	chr16	+	1765	1	FSM	ENSMUSG00000080717.11	ENSMUST00000183578.2	2449	1	28	656	11	-656	mono-exon	FALSE	NA	NA	NA	NA	NA	11	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCCCCCCCAACTCCAAC	NA	False	NA	NA	False	NA	NA	NA	97798574	97800339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_97798600_97800300
75368	chr2	+	456	2	FSM	ENSMUSG00000087377.2	ENSMUST00000124336.2	921	2	11	454	11	-454	multi-exon	FALSE	canonical	3	32	junction_1	0	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTATTGAAGGCGAGG	556	False	NA	NA	False	NA	NA	NA	132095287	132102799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_132095450_132102505
75369	chr4	-	300	1	Intergenic	novelGene_1999	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTAGGGGAGGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	140420996	140420696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_140420700_140421000
75373	chr7	+	894	6	ISM	ENSMUSG00000030688.16	ENSMUST00000210192.2	1258	7	520	7	2	-7	3prime_fragment	TRUE	canonical	3	28	junction_1	27.7949635725611	9	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCAGCCAGCTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	100971179	100995508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_100971241_100991704_100991853_100992390_100992495_100993123_100993242_100994841_100994895_100995098
75374	chr7	+	238	3	NNC	ENSMUSG00000025508.14	novel	465	3	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5653.5	337	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGTGGCCTTTAAACA	2392	False	NA	NA	False	NA	NA	NA	141027557	141031257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_141027621_141027820_141027891_141031152
75375	chr7	+	1079	3	NIC	ENSMUSG00000031074.15	novel	599	4	NA	NA	-183	620	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	27	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAACAGCTGGGATACA	NA	False	NA	NA	False	NA	NA	NA	144391636	144397076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_144391847_144394407_144394512_144396311
75376	chr9	-	657	6	Antisense	novelGene_ENSMUSG00000037286.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_5	3.54400902933387	21	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGTAAGAAATCTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	100851596	100826789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_100827008_100829161_100829254_100838081_100838193_100842389_100842496_100843014_100843098_100851549
75380	chr17	-	652	2	FSM	ENSMUSG00000071230.8	ENSMUST00000095544.6	638	2	-22	8	-22	-8	multi-exon	FALSE	canonical	3	16	junction_1	0	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCGCCCCCGCGTGTGA	8935	False	NA	NA	False	NA	NA	NA	24877453	24876311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24876479_24876968
75381	chr2	+	1212	6	FSM	ENSMUSG00000026870.20	ENSMUST00000113068.9	2278	6	11	1055	11	-1055	multi-exon	FALSE	canonical	0	0	junction_5	0.8	6	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGAGATGTAGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	34764418	34781016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34764604_34772303_34772450_34775882_34775943_34777763_34777810_34778133_34778184_34780291
75382	chr2	+	724	5	NNC	ENSMUSG00000037514.19	novel	370	3	NA	NA	-474	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	246.240228232513	1	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAGATAAATTCTTAAAAT	390	False	NA	NA	False	NA	NA	NA	131103940	131138379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_131104018_131115830_131116041_131129393_131129518_131135318_131135445_131138192
75384	chr13	-	888	5	ISM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	-32	24191	-4	8122	5prime_fragment	FALSE	canonical	3	279	junction_2	26.9756834945845	89	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTTTAAAACTTGTCT	NA	False	NA	NA	False	NA	NA	NA	104246126	104195909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
75386	chr8	-	303	2	NNC	ENSMUSG00000031949.18	novel	3159	10	NA	NA	40	-20232	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	90	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACAGGATTCTGGGATT	NA	False	NA	NA	False	NA	NA	NA	112718894	112718416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112718638_112718812
75387	chr9	+	779	1	ISM	ENSMUSG00000053641.10	ENSMUST00000038890.6	8645	34	107273	276	6130	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAGACTCTTACTAGGT	3826	False	NA	NA	False	NA	NA	NA	64825894	64826673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64825900_64826700
75389	chr10	+	775	6	NNC	ENSMUSG00000078451.6	novel	516	4	NA	NA	-469	-1	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	2.1540659228538	30	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAACATTTGATTTGAAGG	NA	False	NA	NA	False	NA	NA	NA	41377176	41390279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41377355_41377620_41377684_41377779_41377928_41378991_41379049_41383419_41383556_41390086
75390	chr15	+	709	7	NNC	ENSMUSG00000050310.10	novel	2633	7	NA	NA	15	-1875	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	27.2498725787031	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATTATGTTGTCATTTT	NA	False	NA	NA	False	NA	NA	NA	6737878	6786221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785973
75391	chr5	+	436	3	ISM	ENSMUSG00000029134.15	ENSMUST00000202687.2	723	4	691	22	691	-22	3prime_fragment	FALSE	canonical	2	5	junction_2	0.5	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAGAAAGAGAGGCCA	NA	False	NA	NA	False	NA	NA	NA	32512728	32521671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_32512757_32519870_32519946_32521338
75392	chr10	+	473	3	Intergenic	novelGene_3533	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	1.5	38	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAAATTTTTGAAGAGC	NA	False	NA	NA	False	NA	NA	NA	117062500	117063898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_117062653_117063449_117063496_117063623
75393	chr16	+	200	1	Intergenic	novelGene_3624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTTTTTTTTGTGTGTA	1838	False	NA	NA	False	NA	NA	NA	23159179	23159379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_23159200_23159400
75394	chr2	+	880	8	ISM	ENSMUSG00000027485.16	ENSMUST00000028987.7	1637	16	12474	12	12474	-11	3prime_fragment	FALSE	canonical	1	1	junction_4	2.49897938350513	22	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCCCGTGGCTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	154054772	154062251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_154055034_154055384_154055439_154055913_154056073_154057180_154057249_154058135_154058182_154059090_154059155_154060123_154060201_154062100
75395	chr1	+	1088	1	Antisense	novelGene_ENSMUSG00000030768.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTACTTTCTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	182880012	182881100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182880000_182881100
75396	chr10	-	900	6	FSM	ENSMUSG00000020150.14	ENSMUST00000105363.8	988	6	83	5	-11	-5	multi-exon	FALSE	canonical	3	22	junction_3	3.91918358845308	57	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTAGTGGGTTGGTTGGCA	9332	False	NA	NA	False	NA	NA	NA	80096763	80093989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
75397	chr6	+	856	1	Intergenic	novelGene_4163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAACTTTGTCTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	47767906	47768762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_47767900_47768800
75399	chr7	-	706	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_2	5.5	114	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATAAAGGCAATCTAAGG	NA	False	NA	NA	False	NA	NA	NA	79048135	79046146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_79046493_79047383_79047501_79047892
75400	chr6	+	402	3	Antisense	novelGene_ENSMUSG00000108094.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACATCTTTACTTCATAG	NA	False	NA	NA	False	NA	NA	NA	143054182	143058118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_143054237_143056864_143056934_143057839
75401	chr9	+	1238	1	Antisense	novelGene_ENSMUSG00000050471.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGGCCGGCGCAGCCGCA	NA	False	NA	NA	False	NA	NA	NA	35177816	35179054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_35177800_35179100
75402	chr11	+	161	1	Intergenic	novelGene_2496	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGACACTTGGTGTGTAA	NA	False	NA	NA	False	NA	NA	NA	107046810	107046971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_107046800_107047000
75403	chr7	+	453	3	NNC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	19	-178862	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTGTGAACAGTAAACG	NA	False	NA	NA	False	NA	NA	NA	136496361	136553133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_136496417_136548180_136548442_136552996
75404	chrX	+	472	3	NNC	ENSMUSG00000109459.2	novel	1413	2	NA	NA	12811	1456	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATTAAAATAAGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	93787815	93790421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_93787870_93788767_93788871_93790106
75406	chr14	-	1320	7	NNC	ENSMUSG00000022003.8	novel	1188	7	NA	NA	0	180	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	20.4450483002609	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTGTGGTTTTAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	76024445	76006889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_76007102_76007610_76007697_76008894_76008974_76012434_76012583_76013551_76014135_76014435_76014567_76024364
75407	chr7	+	500	1	ISM	ENSMUSG00000018909.16	ENSMUST00000098266.9	7132	16	70759	47	11602	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACCTTGAACGAGAGGT	NA	False	NA	NA	False	NA	NA	NA	99255431	99255931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_99255400_99255900
75409	chr13	-	442	3	FSM	ENSMUSG00000055137.8	ENSMUST00000220514.2	1351	3	10	899	10	876	multi-exon	FALSE	canonical	3	10	junction_1	1.5	27	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTACTCCTTTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	17869344	17858193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_17858438_17859293_17859371_17869223
75410	chr7	-	408	3	FSM	ENSMUSG00000035642.17	ENSMUST00000144858.8	380	3	-33	5	0	1	multi-exon	FALSE	canonical	2	4	junction_1	34	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCACATCAGCCTCCACT	NA	False	NA	NA	False	NA	NA	NA	97228681	97199753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_97199949_97224794_97224899_97228572
75412	chr11	+	480	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	9	3	9	2	multi-exon	FALSE	canonical	3	1210	junction_1	145.470119115767	3513	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTGGTGTCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	69729358	69730441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
75415	chr14	-	981	2	Genic_Genomic	ENSMUSG00000105501.2	novel	2175	1	NA	NA	-715	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	7	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTTGGTGTCCGTGTCGT	NA	False	NA	NA	False	NA	NA	NA	54589808	54586921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_54587803_54589708
75416	chr15	+	890	1	Intergenic	novelGene_3373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTAAGTGTAGCCGATTC	NA	False	NA	NA	False	NA	NA	NA	100167995	100168885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_100168000_100168900
75417	chr4	+	638	1	Genic_Genomic	ENSMUSG00000084127.2	novel	NA	NA	NA	NA	-11	-1053	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCCTCTTCTGGAGTGTC	NA	False	NA	NA	False	NA	NA	NA	146176512	146177150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146176500_146177200
75418	chr1	+	519	3	ISM	ENSMUSG00000026124.5	ENSMUST00000027298.5	1040	6	1477	2	1477	-2	3prime_fragment	FALSE	canonical	3	21	junction_1	0.5	76	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCCTCCTTGCTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	34576205	34583392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_34576328_34576406_34576517_34583105
75420	chr2	-	474	1	Intergenic	novelGene_2652	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCCCCCCCCCATAGTA	61	False	NA	NA	False	NA	NA	NA	72813614	72813140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_72813100_72813600
75422	chr16	+	340	1	Intergenic	novelGene_3674	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTGAGCATATTCCTTG	6585	False	NA	NA	False	NA	NA	NA	57133084	57133424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57133100_57133400
75430	chr16	-	1296	1	Intergenic	novelGene_3614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGTTGGTGACAGAAAA	9138	False	NA	NA	False	NA	NA	NA	20316037	20314741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_20314700_20316000
75431	chr4	-	591	1	NIC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	40	-2350	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCACATTGCTCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	116413092	116412501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116412500_116413100
75432	chr8	-	1012	1	NIC	ENSMUSG00000052906.8	novel	2808	8	NA	NA	62	-14570	mono-exon	FALSE	NA	NA	NA	NA	NA	2	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGACGATCAGTGACTA	4732	False	NA	NA	False	NA	NA	NA	34131933	34130921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_34130900_34131900
75433	SIRV6	+	462	5	FSM	SIRV6A	SIRV614	459	5	0	-3	0	3	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	9735	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACTGTATCGGAGACG	NA	False	NA	NA	False	NA	NA	NA	2516	10818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
75435	chrX	-	927	6	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	77	7190	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	98.7489746782213	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTATTCTTGGTATGT	NA	False	NA	NA	False	NA	NA	NA	156381562	156341751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156342055_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156381491
75437	chr19	-	402	2	ISM	ENSMUSG00000024913.17	ENSMUST00000177294.2	2835	14	29335	129	29335	-129	3prime_fragment	FALSE	canonical	3	122	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATTTTATGATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	3636457	3634964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_3635292_3636382
75444	chr9	+	480	3	FSM	ENSMUSG00000032526.12	ENSMUST00000215833.2	479	3	0	-1	0	1	multi-exon	FALSE	canonical	3	6	junction_2	185.5	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATACACGTCCGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	121539437	121541971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_121539538_121539704_121539782_121541668
75445	chr19	-	745	1	Intergenic	novelGene_1282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTCTTCTTTATTAA	6960	False	NA	NA	False	NA	NA	NA	45051360	45050615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_45050600_45051400
75446	chr7	+	763	1	ISM	ENSMUSG00000066647.9	ENSMUST00000209028.2	5117	3	11675	12	8120	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCAGAAGGATCCGGTTT	3080	False	NA	NA	False	NA	NA	NA	29880974	29881737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_29881000_29881700
75450	chr2	-	1113	2	FSM	ENSMUSG00000085755.2	ENSMUST00000141133.2	1165	2	50	2	50	-2	multi-exon	FALSE	canonical	1	1	junction_1	0	4	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAACCTTTTTTTTTCGTGT	NA	False	NA	NA	False	NA	NA	NA	38888220	38886726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38887374_38887754
75452	chr8	+	737	2	ISM	ENSMUSG00000054191.10	ENSMUST00000067060.10	1530	3	1357	9	1357	-9	3prime_fragment	FALSE	canonical	0	0	junction_1	0	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATAAAACCAGTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	85629913	85631911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85630132_85631392
75454	chr2	+	959	6	Antisense	novelGene_ENSMUSG00000083773.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTGTCTGAGGACTCCAG	NA	False	NA	NA	False	NA	NA	NA	28817783	28945069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_28817966_28846008_28846107_28852641_28852752_28874308_28874536_28875815_28875913_28944824
75456	chr1	-	759	1	ISM	ENSMUSG00000041439.16	ENSMUST00000156876.8	4932	7	70396	22	3232	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTTGATTTGAGAATTT	NA	False	NA	NA	False	NA	NA	NA	52696225	52695466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_52695500_52696200
75457	ERCC-00131	+	755	1	FSM	ERCC-00131A	DQ855003	755	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00131_+_0_800
75459	chr2	-	497	1	Intergenic	novelGene_2707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAACTAATGTA	NA	False	NA	NA	False	NA	NA	NA	129087680	129087183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_129087200_129087700
75460	chr8	-	1179	2	Intergenic	novelGene_1632	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	25	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTGCTGCCCTAAACTA	NA	False	NA	NA	False	NA	NA	NA	43633298	43628963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_43630078_43633233
75461	chr6	+	968	3	ISM	ENSMUSG00000079598.5	ENSMUST00000114874.5	1431	5	13753	15	12941	-15	3prime_fragment	FALSE	canonical	2	3	junction_1	1	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGCATCTCTGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	38653754	38657785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_38653899_38654443_38654545_38657062
75462	chr4	+	574	3	NNC	ENSMUSG00000042388.15	novel	2901	10	NA	NA	-3633	-13966	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	82.5	23	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGCACTTGGGAGGTGG	NA	False	NA	NA	False	NA	NA	NA	127093465	127094581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_127093672_127094056_127094130_127094286
75463	chr4	-	876	4	ISM	ENSMUSG00000040935.13	ENSMUST00000038749.11	2333	16	11540	4	1940	-4	3prime_fragment	FALSE	canonical	3	19	junction_1	1.24721912892465	52	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGTTTTTACGCCGCC	NA	False	NA	NA	False	NA	NA	NA	140458414	140454669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_140455121_140456177_140456340_140457019_140457091_140458222
75466	chr9	-	790	2	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATATCTCCCTCGCATACC	NA	False	NA	NA	False	NA	NA	NA	34926926	34925936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_34926707_34926906
75467	chr1	+	1348	1	Intergenic	novelGene_386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGATGGCTTTTAAGAATA	NA	False	NA	NA	False	NA	NA	NA	72673426	72674774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_72673400_72674800
75470	chr16	+	669	2	Genic_Genomic	ENSMUSG00000022947.9	novel	1170	3	NA	NA	-379	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTATTTGGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	93479723	93487876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_93479960_93487443
75472	chr8	-	1001	1	Intergenic	novelGene_1584	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAACCCATAATATTCAAA	NA	False	NA	NA	False	NA	NA	NA	19843681	19842680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_19842700_19843700
75473	chr6	-	1080	1	FSM	ENSMUSG00000046717.6	ENSMUST00000054786.6	1456	1	103	273	103	-273	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAAACCCTGTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	138635439	138634359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_138634400_138635400
75474	chr10	+	612	1	Genic_Genomic	ENSMUSG00000020327.5	novel	NA	NA	NA	NA	3417	569	mono-exon	FALSE	NA	NA	NA	NA	NA	43	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAAGCCTGGGGGATTGGT	NA	False	NA	NA	False	NA	NA	NA	79594387	79594999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_79594400_79595000
75475	chr15	-	181	1	Intergenic	novelGene_3316	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGTGTTCTTTTAAAA	3598	False	NA	NA	False	NA	NA	NA	77254072	77253891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_77253900_77254100
75476	chr1	-	594	4	NNC	ENSMUSG00000099343.2	novel	633	2	NA	NA	15611	-172	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	30.0998338865848	37	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTGTGTACTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	21326206	21320754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_21321037_21323622_21323669_21324392_21324563_21326110
75479	chr6	-	1192	1	FSM	ENSMUSG00000033720.13	ENSMUST00000203035.2	4476	1	462	2822	-210	-2822	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGTGTCTGGTATCTG	NA	False	NA	NA	False	NA	NA	NA	85309942	85308750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_85308800_85309900
75480	chr15	-	280	2	NNC	ENSMUSG00000022474.16	novel	1059	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	33	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81845061	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835443_81844915
75481	chr8	-	419	1	Antisense	novelGene_ENSMUSG00000074178.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGGGCAGCAGCCGCCAGC	NA	False	NA	NA	False	NA	NA	NA	87473224	87472805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_87472800_87473200
75482	chr3	+	1073	1	Intergenic	novelGene_3171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCCTGAATGAATACTCG	NA	False	NA	NA	False	NA	NA	NA	104128305	104129378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_104128300_104129400
75483	chr8	+	1781	1	Intergenic	novelGene_1761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCTGTGATCCTCC	NA	False	NA	NA	False	NA	NA	NA	115519526	115521307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_115519500_115521300
75485	chr10	-	1262	6	NIC	ENSMUSG00000071324.12	novel	669	4	NA	NA	3	-33	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	1.89736659610103	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAAAATAATAAATGTTAT	NA	False	NA	NA	False	NA	NA	NA	41894373	41862642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41863032_41869034_41869225_41876325_41876495_41884648_41884722_41887763_41888020_41894188
75486	chr3	+	679	1	Intergenic	novelGene_3162	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAAAGGCCTTTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	96486047	96486726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_96486000_96486700
75487	chr5	-	713	1	ISM	ENSMUSG00000029471.14	ENSMUST00000111668.8	4861	17	47487	13	12197	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	20	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGTGCAAAGCCCGGG	NA	False	NA	NA	False	NA	NA	NA	122869958	122869245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_122869200_122870000
75488	chr7	+	569	4	ISM	ENSMUSG00000051900.13	ENSMUST00000144122.8	3551	11	68	43749	68	-43749	5prime_fragment	FALSE	canonical	0	0	junction_1	0.942809041582063	1	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAAGTATCCAGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	120008937	120035173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_120008990_120030330_120030473_120032565_120032826_120035058
75490	chr2	+	637	3	FSM	ENSMUSG00000046814.4	ENSMUST00000057454.4	645	3	-11	19	-11	-19	multi-exon	FALSE	canonical	3	13	junction_2	2.5	56	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGTGGTTGTTCCTCAG	1197	False	NA	NA	False	NA	NA	NA	118998242	119002852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118998355_119000156_119000252_119002422
75491	chr19	+	613	2	ISM	ENSMUSG00000006435.17	ENSMUST00000235290.2	1060	4	61423	-420	11663	420	3prime_fragment	FALSE	canonical	3	8	junction_1	0	6	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTTCTGTTTTTCAAGTC	156	False	NA	NA	False	NA	NA	NA	47229012	47230255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_47229111_47229740
75492	chr11	+	734	1	ISM	ENSMUSG00000038721.9	ENSMUST00000049352.8	1291	2	2798	8	706	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATCAACAGACACGCTG	2882	False	NA	NA	False	NA	NA	NA	96180246	96180980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_96180200_96181000
75494	chr5	+	348	1	ISM	ENSMUSG00000023353.15	ENSMUST00000199856.2	2685	9	8615	8	2657	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATACTCGTGTCTTGGTT	1847	False	NA	NA	False	NA	NA	NA	24687826	24688174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_24687800_24688200
75495	chr6	-	1215	6	Intergenic	novelGene_4236	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	27	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGGCCTATGATTTTCA	NA	False	NA	NA	False	NA	NA	NA	120061993	120029419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_120029432_120056718_120056860_120059949_120060259_120060447_120060555_120061261_120061407_120061492
75497	chr11	-	415	1	Intergenic	novelGene_2438	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTCTCAAAAAAAAAAAAAAA	3743	False	NA	NA	False	NA	NA	NA	87339134	87338719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_87338700_87339100
75498	chr14	+	715	2	FSM	ENSMUSG00000093966.3	ENSMUST00000103655.3	411	2	-6	-298	-6	298	multi-exon	FALSE	canonical	1	2	junction_1	0	19	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTCTTATATACTCCAG	NA	False	NA	NA	False	NA	NA	NA	53836278	53837165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_53836417_53836588
75499	chr7	+	673	4	FSM	ENSMUSG00000025481.13	ENSMUST00000106050.8	719	4	124	-78	124	-1	multi-exon	FALSE	canonical	3	242	junction_1	5.43650214343336	882	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAATCTGAACCTATCAT	NA	False	NA	NA	False	NA	NA	NA	140415054	140417878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140415172_140415524_140415665_140416659_140416796_140417598
75500	chr6	+	477	2	ISM	ENSMUSG00000030001.5	ENSMUST00000032070.4	759	3	1387	16	1387	-16	3prime_fragment	FALSE	canonical	2	2	junction_1	0	10	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATATGGGAAAGGAGTTT	NA	False	NA	NA	False	NA	NA	NA	85995559	85997962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_85995714_85997639
75501	chr5	-	451	2	ISM	ENSMUSG00000105039.2	ENSMUST00000198586.2	764	4	32892	22	32892	-22	3prime_fragment	FALSE	canonical	2	3	junction_1	0	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTCTCGGGCAAGCTA	9373	False	NA	NA	False	NA	NA	NA	125316987	125315399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125315796_125316932
75502	chr11	-	1937	1	Antisense	novelGene_ENSMUSG00000025161.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCCGGCGCCGCGCCGG	NA	False	NA	NA	False	NA	NA	NA	120841873	120839936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_120839900_120841900
75503	chr14	+	470	2	Antisense	novelGene_ENSMUSG00000115615.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	163	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCCAGTGAGCATGCGCT	NA	False	NA	NA	False	NA	NA	NA	75609404	75616291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_75609485_75615901
75505	chr4	+	1211	2	ISM	ENSMUSG00000010517.8	ENSMUST00000155204.2	1132	6	-224	82692	-224	-82692	5prime_fragment	FALSE	canonical	3	1166	junction_1	0	3	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAAGTGCTTTTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	109697757	109699883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_109698570_109699484
75506	chr2	-	626	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	4	21968	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	72.0431969183921	15	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTATTATTACTTTATTA	NA	False	NA	NA	False	NA	NA	NA	156681716	156653000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156653155_156679742_156679834_156680337_156680457_156681454
75507	chr17	-	998	8	NNC	ENSMUSG00000023951.19	novel	1973	8	NA	NA	269	-2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_7	216.053186951354	20	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATAAAATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	46342013	46329406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46329806_46331916_46332049_46333202_46333275_46334990_46335021_46335369_46335447_46336272_46336470_46339276_46339326_46341971
75508	chr8	-	1872	1	Intergenic	novelGene_1777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACCCTCAAACCCTTAAG	NA	False	NA	NA	False	NA	NA	NA	122619534	122617662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_122617700_122619500
75509	chr11	+	1239	8	NNC	ENSMUSG00000010021.14	novel	1959	12	NA	NA	-11	-3443	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.349927106111883	3	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGCAAGCAGACGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	114656202	114672950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_114656379_114657981_114658063_114669179_114669291_114670037_114670126_114670410_114670552_114671578_114671705_114671996_114672192_114672629
75510	chr16	-	785	2	ISM	ENSMUSG00000022738.8	ENSMUST00000012279.6	1172	3	513	8	513	-8	3prime_fragment	FALSE	canonical	3	29	junction_1	0	10	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGAACAGTCCAGGATTT	NA	False	NA	NA	False	NA	NA	NA	17732410	17730978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_17731583_17732229
75511	chr9	+	351	1	Antisense	novelGene_ENSMUSG00000050621.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAGGGATAAGTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	114811454	114811805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_114811500_114811800
75514	chr7	+	277	1	ISM	ENSMUSG00000109017.2	ENSMUST00000207099.2	698	3	742	209	742	-209	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGAAGGCCTTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	28729189	28729466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28729200_28729500
75515	chr5	-	1301	1	Intergenic	novelGene_658	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAGCTGCAGTACAATC	NA	False	NA	NA	False	NA	NA	NA	9013604	9012303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_9012300_9013600
75516	chr8	+	680	2	FSM	ENSMUSG00000074203.5	ENSMUST00000098571.5	721	2	43	-2	43	2	multi-exon	FALSE	canonical	2	3	junction_1	0	30	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTGGCTCACATCTGT	NA	False	NA	NA	False	NA	NA	NA	85449678	85453475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85449901_85453017
75517	chr4	-	734	4	ISM	ENSMUSG00000038578.16	ENSMUST00000107544.2	3220	17	57673	50824	-17978	-33621	internal_fragment	FALSE	canonical	3	63	junction_2	8.80656320908194	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATGCTTGAATCTTACCA	NA	False	NA	NA	False	NA	NA	NA	59380960	59365577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_59365915_59369530_59369641_59379598_59379786_59380860
75518	chr10	-	420	4	NNC	ENSMUSG00000038151.14	novel	4025	7	NA	NA	11931	-1600	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACGTCAGAACACGTGG	NA	False	NA	NA	False	NA	NA	NA	44321275	44317262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_44317328_44318666_44318848_44319640_44319729_44321189
75521	chr13	-	265	2	ISM	ENSMUSG00000021214.15	ENSMUST00000110704.9	1103	8	15365	18	15365	-11	3prime_fragment	FALSE	canonical	1	1	junction_1	0	1	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTCAACCTCATCTACT	NA	False	NA	NA	False	NA	NA	NA	4185262	4182631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_4182836_4185201
75522	chr16	+	679	1	Antisense	novelGene_ENSMUSG00000022898.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATTTCTCTGTAAAGTG	NA	False	NA	NA	False	NA	NA	NA	94327563	94328242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_94327600_94328200
75523	chr19	+	620	1	Intergenic	novelGene_1201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAATCTGCGCCAAGTG	NA	False	NA	NA	False	NA	NA	NA	5686036	5686656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_5686000_5686700
75524	chr5	+	972	1	Intergenic	novelGene_757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTCTTAATAAATGGCCT	NA	False	NA	NA	False	NA	NA	NA	100465104	100466076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_100465100_100466100
75525	chr7	+	710	3	FSM	ENSMUSG00000030990.19	ENSMUST00000124619.8	1033	3	-34	357	-8	309	multi-exon	FALSE	canonical	3	118	junction_1	18	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCCAGAATCCAATTAC	603	False	NA	NA	False	NA	NA	NA	101872243	101875961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_101872358_101872585_101872698_101875477
75526	chr1	-	1035	1	Intergenic	novelGene_486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAGCAATAACAACAAC	NA	False	NA	NA	False	NA	NA	NA	179117464	179116429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_179116400_179117500
75528	chr10	+	430	2	ISM	ENSMUSG00000025400.12	ENSMUST00000026466.5	678	7	3945	0	1493	0	3prime_fragment	FALSE	canonical	3	36	junction_1	0	6	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACTGATGCAATAGGCTG	NA	False	NA	NA	False	NA	NA	NA	127565208	127567637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127565419_127567417
75529	chr9	+	1301	1	Intergenic	novelGene_1156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAACACGGATTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	106555932	106557233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_106555900_106557200
75531	chr7	+	1159	1	Antisense	novelGene_ENSMUSG00000000131.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATCTGAGATCCATACAG	NA	False	NA	NA	False	NA	NA	NA	125718426	125719585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_125718400_125719600
75532	chr4	-	586	2	Genic_Genomic	ENSMUSG00000073752.3	novel	2118	1	NA	NA	-945	-240	multi-exon	FALSE	canonical	0	0	junction_1	0	4	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATATTGTGTATGCTCG	NA	False	NA	NA	False	NA	NA	NA	130203412	130202194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_130202601_130203232
75533	chr12	-	635	5	ISM	ENSMUSG00000037336.15	ENSMUST00000137337.8	2641	15	7835	879	2738	-386	3prime_fragment	FALSE	canonical	1	1	junction_1	2.58602010819715	1	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCAGACTGCTCCACCTT	1755	False	NA	NA	False	NA	NA	NA	4916523	4913950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_4914080_4915136_4915314_4915727_4915872_4916158_4916269_4916448
75534	chr4	+	872	2	ISM	ENSMUSG00000085389.8	ENSMUST00000139884.2	541	3	17	1743	17	-1606	5prime_fragment	FALSE	canonical	2	2	junction_1	0	20	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAGTGTAGAATATGTGG	5441	False	NA	NA	False	NA	NA	NA	129854617	129855707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_129854774_129854991
75535	chr10	-	553	2	FSM	ENSMUSG00000111753.2	ENSMUST00000214107.2	555	2	5	-3	5	3	multi-exon	FALSE	canonical	1	1	junction_1	0	23	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGACTTAGTTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	35361387	35354819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_35355139_35361153
75536	chr6	-	538	2	Intergenic	novelGene_4270	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	64	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACGAGAACTTAAAATCAGC	NA	False	NA	NA	False	NA	NA	NA	144930124	144907272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_144907643_144929956
75537	chr10	-	585	2	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	3709	1072	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCATAGGCGTTTTTGACT	NA	False	NA	NA	False	NA	NA	NA	84385493	84382208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_84382384_84385083
75538	chr12	-	769	4	NIC	ENSMUSG00000021056.9	novel	2137	10	NA	NA	12466	-22	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	11.0855260988773	38	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCAACATTTCAACTAAAA	1112	False	NA	NA	False	NA	NA	NA	76263772	76245481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_76245726_76259148_76259332_76261186_76261493_76263736
75539	chr11	+	1196	1	Antisense	novelGene_ENSMUSG00000048807.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTCTTTGAATTAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	3863963	3865159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_3864000_3865200
75540	chr9	-	414	2	Intergenic	novelGene_1020	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2029	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAAAAAAGTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	42600843	42600332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_42600590_42600686
75544	chr2	+	1143	4	Antisense	novelGene_ENSMUSG00000026826.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTAGCCTGTGCTGTAGTTG	NA	False	NA	NA	False	NA	NA	NA	56999078	57002237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_56999278_57000125_57000292_57000650_57000781_57001589
75545	chr5	+	731	2	Antisense	novelGene_ENSMUSG00000029245.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGAAGGGGAGTAGGGA	NA	False	NA	NA	False	NA	NA	NA	84501231	84507087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_84501470_84506594
75546	chr7	-	601	6	NNC	ENSMUSG00000074358.10	novel	864	9	NA	NA	-7120	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	92.6878632831721	5	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCCCCTAGTGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	18635004	18624810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626422_18634963
75548	chr11	-	774	1	NIC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	5	-5554	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCAGAGCAAATCCTTT	NA	False	NA	NA	False	NA	NA	NA	75239131	75238357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_75238400_75239100
75549	chr13	+	696	4	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	32	-37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	126.71314936589	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGCTACAGTTTTGATC	NA	False	NA	NA	False	NA	NA	NA	76328575	76336065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_76328672_76330933_76331065_76333247_76333370_76335718
75550	chr7	-	1009	6	FSM	ENSMUSG00000062773.7	ENSMUST00000078001.7	1059	6	21	29	21	-29	multi-exon	FALSE	canonical	2	2	junction_5	1.72046505340853	22	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAATAAAATTAGTGATTT	1023	False	NA	NA	False	NA	NA	NA	24371454	24367460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_24367828_24367933_24368066_24369138_24369325_24369757_24369899_24370003_24370109_24371376
75551	chr5	+	511	1	FSM	ENSMUSG00000106391.2	ENSMUST00000197921.2	1836	1	35	1290	35	-1290	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGAATAACAATAAATTCA	7379	False	NA	NA	False	NA	NA	NA	100577619	100578130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100577600_100578100
75552	chrX	-	586	6	Intergenic	novelGene_4111	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	38	junction_4	7.62627038597505	44	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGACTCCCCTGCCTTACA	NA	False	NA	NA	False	NA	NA	NA	169093262	169090875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_169091046_169091285_169091434_169092170_169092263_169092526_169092592_169092967_169093033_169093216
75554	chr19	-	538	1	NIC	ENSMUSG00000033610.17	novel	2760	7	NA	NA	48	-37128	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGATTGGCTGATACCCG	931	False	NA	NA	False	NA	NA	NA	34855201	34854663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_34854700_34855200
75555	chr5	-	310	2	Intergenic	novelGene_974	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_1	0	1	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTAAAAAAATACCTG	NA	False	NA	NA	False	NA	NA	NA	149028586	149027660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_149027839_149028454
75557	chr14	+	319	2	Intergenic	novelGene_633	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	23	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATACTAAGACAAGAGTCTT	2860	False	NA	NA	False	NA	NA	NA	99587343	99588756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_99587424_99588517
75561	chr6	+	438	2	Antisense	novelGene_ENSMUSG00000046764.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATAAACTCAAGTTATAC	NA	False	NA	NA	False	NA	NA	NA	60339600	60350018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_60339741_60349720
75565	chr5	-	838	1	Intergenic	novelGene_758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTTGGCTGAGCAAGGAG	NA	False	NA	NA	False	NA	NA	NA	102211479	102210641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_102210600_102211500
75566	chr8	-	566	3	NNC	ENSMUSG00000019362.9	novel	616	3	NA	NA	4	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	928	9	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCACAGAGGCTGTGTG	9838	False	NA	NA	False	NA	NA	NA	84976344	84972875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84973323_84976102_84976151_84976273
75570	chr17	+	833	2	NNC	ENSMUSG00000041831.18	novel	1619	4	NA	NA	3202	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCATAACTGTAATTTTG	4594	False	NA	NA	False	NA	NA	NA	6946521	6947901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6946690_6947236
75571	chr8	-	726	5	NIC	ENSMUSG00000031816.16	novel	358	4	NA	NA	-16	-7	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	27.9776696670756	83	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAAATTGTCTGCGGCTT	NA	False	NA	NA	False	NA	NA	NA	121835098	121830597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121830920_121831130_121831245_121832312_121832427_121833608_121833713_121835026
75572	chr18	+	549	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	93	-203	20	-72	multi-exon	FALSE	canonical	3	110	junction_2	847.378047600689	27	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGGATGAGATCTAAAACT	23	False	NA	NA	False	NA	NA	NA	10617888	10628158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
75573	chr7	+	471	3	FSM	ENSMUSG00000019158.10	ENSMUST00000019302.10	815	3	344	0	160	0	multi-exon	FALSE	canonical	3	728	junction_1	16.5	190	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAGACTCTGAGTGATA	NA	False	NA	NA	False	NA	NA	NA	16187047	16189415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_16187096_16188045_16188139_16189085
75574	chr5	+	667	4	FSM	ENSMUSG00000029468.18	ENSMUST00000086247.6	712	4	45	0	45	0	multi-exon	TRUE	canonical	2	5	junction_3	10.4029910228848	39	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGAATTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	122782116	122793325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122793041
75576	chr9	-	404	1	NIC	ENSMUSG00000059890.17	novel	6039	20	NA	NA	39235	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCGCAGAAAGGAAGCAACAA	NA	False	NA	NA	False	NA	NA	NA	44837588	44837184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44837200_44837600
75577	chr15	-	921	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	91	-92	6	5	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	338	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATTTTCAAGAACTAAATT	NA	False	NA	NA	False	NA	NA	NA	100534730	100519237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
75578	chr9	+	937	5	NNC	ENSMUSG00000032456.14	novel	2166	5	NA	NA	0	5263	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4.60977222864644	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATTCTTAAGACTTGT	NA	False	NA	NA	False	NA	NA	NA	98178635	98286832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_98179034_98236071_98236218_98281508_98281693_98285586_98285667_98286703
75579	chr6	-	683	1	FSM	ENSMUSG00000104204.2	ENSMUST00000194579.2	2842	1	312	1847	312	-1847	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATATTCTATATTTTCA	NA	False	NA	NA	False	NA	NA	NA	57664253	57663570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_57663600_57664300
75580	chr3	-	739	1	ISM	ENSMUSG00000039795.15	ENSMUST00000125734.2	4685	2	1961	2073	1961	-1211	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGTGAGTACACTGTAG	NA	False	NA	NA	False	NA	NA	NA	10407826	10407087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_10407100_10407800
75581	chr2	+	711	6	ISM	ENSMUSG00000074652.4	ENSMUST00000092995.6	6163	42	21449	119	-790	-15	3prime_fragment	FALSE	canonical	3	70	junction_2	4.07921561087423	16	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGTCTGCAGCAGTAG	NA	False	NA	NA	False	NA	NA	NA	155474580	155476108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_155474673_155474767_155474939_155475084_155475190_155475272_155475369_155475782_155475921_155475999
75583	chr7	-	932	1	Genic_Genomic	ENSMUSG00000108814.2	novel	NA	NA	NA	NA	808	619	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTGTGCCCAGTCACCT	NA	False	NA	NA	False	NA	NA	NA	125016478	125015546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_125015500_125016500
75584	chr2	+	910	3	Antisense	novelGene_ENSMUSG00000068373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_2	1.5	14	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACCCCTAAGGCTCAC	3046	False	NA	NA	False	NA	NA	NA	104030891	104032183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_104031169_104031298_104031363_104031614
75585	chr11	-	185	1	Intergenic	novelGene_2227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGCTTTTGCCGCAGA	NA	False	NA	NA	False	NA	NA	NA	19787608	19787423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_19787400_19787600
75587	chr5	-	807	2	Intergenic	novelGene_739	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	13	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGTTACTAGAAGTAAT	NA	False	NA	NA	False	NA	NA	NA	88868483	88863623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_88863964_88868016
75588	chr9	-	577	5	Intergenic	novelGene_1088	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1	10	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCACCCGGTTGCATCTG	NA	False	NA	NA	False	NA	NA	NA	61156946	61145592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_61145833_61146301_61146388_61150472_61150574_61150672_61150745_61156868
75589	chr18	+	794	4	NIC	ENSMUSG00000036452.19	novel	2515	12	NA	NA	-4904	-8	combination_of_known_junctions	FALSE	canonical	3	20	junction_3	5.8878405775519	29	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCCATCTGGGACTTTG	NA	False	NA	NA	False	NA	NA	NA	39419583	39440418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_39419740_39429837_39429977_39439754_39439906_39440070
75591	chr6	-	331	1	Intergenic	novelGene_4273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATCATTTCTCCTAATGT	NA	False	NA	NA	False	NA	NA	NA	146535525	146535194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_146535200_146535500
75595	chr5	+	445	3	Intergenic	novelGene_728	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	28	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGAGTTTCAGCATTTCC	NA	False	NA	NA	False	NA	NA	NA	75526722	75527602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_75526760_75526842_75526923_75527274
75596	chr14	+	973	1	Intergenic	novelGene_528	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACCCTCCCAACCAAAAC	NA	False	NA	NA	False	NA	NA	NA	21679076	21680049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_21679100_21680000
75600	chr13	-	421	1	Intergenic	novelGene_1531	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAATGTTTCGGTTTTA	NA	False	NA	NA	False	NA	NA	NA	107083305	107082884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_107082900_107083300
75601	chrX	+	685	4	ISM	ENSMUSG00000071772.14	ENSMUST00000115203.10	1053	6	5107	0	19	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCCCATGTGCCTTTTGA	NA	False	NA	NA	False	NA	NA	NA	36518678	36522636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_36518712_36518961_36519332_36521207_36521254_36522400
75604	chr15	-	1041	2	Intergenic	novelGene_3294	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	48	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGAAACCACAAATTTAT	NA	False	NA	NA	False	NA	NA	NA	57840476	57837911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_57838339_57839862
75605	chr18	-	1110	5	NIC	ENSMUSG00000032656.15	novel	860	4	NA	NA	3	-12	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	1.4142135623731	2	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTAGTCTTTGGGTCTA	NA	False	NA	NA	False	NA	NA	NA	57058584	56908935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_56909181_56916090_56916301_56940735_56940941_56944903_56945148_57058378
75606	chr10	+	764	2	ISM	ENSMUSG00000040021.14	ENSMUST00000217931.2	4186	7	249	15640	249	-15640	5prime_fragment	FALSE	canonical	3	143	junction_1	0	6	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCTGCTCTCTCTCATTT	NA	False	NA	NA	False	NA	NA	NA	7567259	7573710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_7567579_7573265
75608	chr17	-	549	3	FSM	ENSMUSG00000062012.15	ENSMUST00000228298.2	502	3	-23	-24	18	24	multi-exon	FALSE	canonical	3	12	junction_1	39	35	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACACTGGTACAAGT	4856	False	NA	NA	False	NA	NA	NA	23805173	23803739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_23803913_23804411_23804549_23804934
75610	chr14	-	709	6	FSM	ENSMUSG00000021773.12	ENSMUST00000177527.2	714	6	89	-84	89	-6	multi-exon	FALSE	canonical	3	244	junction_3	17.4745529270422	1	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGACACGCGACCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	21898666	21897258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608
75611	chr3	+	943	5	Genic_Genomic	ENSMUSG00000027774.17	novel	1971	14	NA	NA	1531	5060	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGCTTGCTCGCTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	67365342	67371198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_67365667_67365932_67365990_67368254_67368395_67368647_67368803_67370931
75612	chr7	-	670	4	Antisense	novelGene_ENSMUSG00000054612.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATAAGCAGCACCTTTCAA	NA	False	NA	NA	False	NA	NA	NA	136729899	136604885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_136604964_136687672_136687837_136723215_136723357_136729612
75613	chr12	-	537	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	-19	9	-17	-9	multi-exon	FALSE	canonical	3	45	junction_1	0	167	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGGAAGCTGTGTGTCT	8319	False	NA	NA	False	NA	NA	NA	104998555	104996884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_104997085_104998218
75615	chr19	+	94	1	Intergenic	novelGene_1258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	168	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATGGGACCTGATGTGT	NA	False	NA	NA	False	NA	NA	NA	40261493	40261587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_40261500_40261600
75617	chr7	-	628	5	NNC	ENSMUSG00000061877.14	novel	640	6	NA	NA	4	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.87228132326901	55	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACGTAATTAGGATGTTG	3288	False	NA	NA	False	NA	NA	NA	81148025	81144028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81144127_81144873_81145122_81145326_81145529_81145890_81145912_81147966
75618	chr4	+	494	4	Antisense	novelGene_ENSMUSG00000079998.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	2.49443825784929	25	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGCCGTGCAGGTGAA	NA	False	NA	NA	False	NA	NA	NA	127302467	127308244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127302541_127302789_127302970_127303602_127303687_127308087
75619	chr1	+	683	1	FSM	ENSMUSG00000100455.2	ENSMUST00000190224.2	3666	1	-43	3026	-43	-3026	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTTTTGTTAAAATGT	NA	False	NA	NA	False	NA	NA	NA	143653336	143654019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_143653300_143654000
75621	chr9	-	832	2	Intergenic	novelGene_1185	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	21	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTTCTATCGTACAAT	NA	False	NA	NA	False	NA	NA	NA	124239712	124203003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_124203757_124239633
75622	chr8	+	512	1	ISM	ENSMUSG00000034656.19	ENSMUST00000238701.2	8370	49	301094	2	742	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	37	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGGACTTCTGAACTAGA	NA	False	NA	NA	False	NA	NA	NA	85366361	85366873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85366400_85366900
75623	chr12	-	674	2	NNC	ENSMUSG00000087700.3	novel	818	3	NA	NA	30	10708	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	27	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCAAATGATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	73996529	73962546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_73963089_73996397
75624	chr12	-	623	1	Intergenic	novelGene_4351	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGACTGAGCATACTCTG	NA	False	NA	NA	False	NA	NA	NA	43250146	43249523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_43249500_43250100
75625	chr17	+	764	1	Intergenic	novelGene_11	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTATACATTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	10539306	10540070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_10539300_10540100
75626	chr8	+	785	1	Intergenic	novelGene_1651	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGAACGTGCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	69758242	69759027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_69758200_69759000
75628	chr12	+	878	1	Intergenic	novelGene_4462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGTAAGCCAGCCCAGT	NA	False	NA	NA	False	NA	NA	NA	105524411	105525289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_105524400_105525300
75629	chr17	+	759	1	NIC	ENSMUSG00000033826.11	novel	14583	93	NA	NA	19989	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGCTCGCCTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	31093477	31094236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_31093500_31094200
75630	chr19	+	487	4	NNC	ENSMUSG00000024925.12	novel	1126	4	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	123.874488450564	9	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAATGCCTGAGTCTGT	5036	False	NA	NA	False	NA	NA	NA	5651891	5652957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5652109_5652220_5652265_5652477_5652598_5652851
75631	chr6	-	400	2	Intergenic	novelGene_4265	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	14	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAGAGGCGTTACTAA	NA	False	NA	NA	False	NA	NA	NA	137700395	137699346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_137699472_137700120
75632	chr17	+	702	3	ISM	ENSMUSG00000036918.17	ENSMUST00000144204.8	2209	17	64	68969	64	23	5prime_fragment	FALSE	canonical	3	65	junction_1	1.5	2	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTCGGAGGCCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	87590442	87600380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_87590839_87597616_87597781_87600238
75633	chr12	+	655	4	NNC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	1911	-12318	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTATATGGATGTT	7312	False	NA	NA	False	NA	NA	NA	105713444	105736388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105713575_105732812_105733018_105734798_105735014_105736283
75634	chr10	-	1326	1	Intergenic	novelGene_3565	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACCCCCCCCCCAAA	NA	False	NA	NA	False	NA	NA	NA	127894644	127893318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_127893300_127894600
75635	chr2	+	865	1	NIC	ENSMUSG00000006418.18	novel	3001	8	NA	NA	303	-22352	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGAACCCTTGTCTAGAT	NA	False	NA	NA	False	NA	NA	NA	167334867	167335732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_167334900_167335700
75636	chr1	-	887	1	ISM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	24308	18	14196	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGTGTACTATTAAAAGA	NA	False	NA	96	True	NA	NA	NA	13635826	13634939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_13634900_13635800
75637	chr7	+	401	1	ISM	ENSMUSG00000045795.11	ENSMUST00000165460.2	3069	10	25144	0	24492	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTCGTTTCCAGAGGCC	3036	False	NA	NA	False	NA	NA	NA	81246183	81246584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_81246200_81246600
75638	chr6	+	445	2	FSM	ENSMUSG00000100680.2	ENSMUST00000186472.2	486	2	40	1	40	-1	multi-exon	FALSE	canonical	2	7	junction_1	0	99	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTCTACACTCATTT	NA	False	NA	NA	False	NA	NA	NA	91418008	91418736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_91418141_91418423
75641	chr17	+	900	1	Intergenic	novelGene_320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACACACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	88922975	88923875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_88923000_88923900
75643	chr8	-	1299	1	Intergenic	novelGene_1643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGTAAGATGAAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	48977903	48976604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_48976600_48977900
75644	chr2	+	1222	1	Intergenic	novelGene_2632	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGATAAGTATAAACA	NA	False	NA	NA	False	NA	NA	NA	57211939	57213161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_57211900_57213200
75649	chr8	-	360	2	FSM	ENSMUSG00000089665.3	ENSMUST00000159364.3	392	2	35	-3	35	3	multi-exon	FALSE	canonical	3	78	junction_1	0	309	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGATGTCTTTCTATTAC	NA	False	NA	NA	False	NA	NA	NA	3722327	3721184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_3721397_3722179
75650	chr10	-	575	8	NNC	ENSMUSG00000036009.17	novel	2033	12	NA	NA	41292	-127	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	44.209612030851	1	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCAGTGTGATCGTGGCT	NA	False	NA	NA	False	NA	NA	NA	105635780	105599242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635725
75651	chr5	-	660	1	ISM	ENSMUSG00000040751.13	ENSMUST00000077636.8	1717	12	14090	254	2985	-38	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGTGAGAGCAGGCGCT	9754	False	NA	NA	False	NA	NA	NA	134629789	134629129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_134629100_134629800
75652	chr2	+	836	4	NNC	ENSMUSG00000045503.17	novel	1606	4	NA	NA	-4	-612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.006424651744	65	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	164302968	164306816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164303022_164303273_164303450_164305220_164305289_164306277
75653	chr16	+	1481	1	Intergenic	novelGene_3571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCGACTCCATTTTCTGG	70	False	NA	NA	False	NA	NA	NA	3847326	3848807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_3847300_3848800
75654	chr6	+	482	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	-4	1	-4	0	multi-exon	FALSE	canonical	3	741	junction_1	0	2305	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTTTGGTTTTTGTGTGC	9925	False	NA	NA	False	NA	NA	NA	38511753	38516383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_38511946_38516093
75655	chr10	-	970	1	Intergenic	novelGene_3391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCAAGAGTACATCGAACC	NA	False	NA	NA	False	NA	NA	NA	11181065	11180095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_11180100_11181100
75657	chr17	+	988	2	ISM	ENSMUSG00000080316.12	ENSMUST00000052338.10	538	4	57	23	57	-19	intron_retention	FALSE	canonical	1	2	junction_1	0	7	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTATATATTTTAGTTC	NA	False	NA	NA	False	NA	NA	NA	18057822	18059310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_18057849_18058348
75658	chr5	-	1081	9	ISM	ENSMUSG00000029415.5	ENSMUST00000201143.2	2156	22	-35	13101	-35	1793	5prime_fragment	FALSE	canonical	3	301	junction_1	29.698484809835	2	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGACCTGAGTTCTTAGAA	NA	False	NA	NA	False	NA	NA	NA	92457788	92447700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
75659	chr14	-	594	2	Antisense	novelGene_ENSMUSG00000034959.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTGAAATACTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	75304606	75285367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_75285810_75304454
75660	chr11	-	461	4	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	763	0	763	0	3prime_fragment	FALSE	canonical	3	77	junction_3	8.80656320908194	354	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	NA	False	NA	NA	NA	5848019	5846636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831
75662	chr1	+	935	5	ISM	ENSMUSG00000036480.10	ENSMUST00000044533.9	2180	13	3303	0	3303	0	3prime_fragment	FALSE	canonical	0	0	junction_1	1.29903810567666	4	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAAATCTGGAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	87114337	87116127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87114477_87114605_87114771_87114867_87114931_87115217_87115325_87115666
75663	chr4	-	898	1	Antisense	novelGene_ENSMUSG00000006221.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCAGGAAGGGGCTTCT	NA	False	NA	NA	False	NA	NA	NA	141152620	141151722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_141151700_141152600
75664	chr7	-	441	2	FSM	ENSMUSG00000038570.16	ENSMUST00000126478.2	430	2	-25	14	-25	-14	multi-exon	FALSE	canonical	3	16	junction_1	0	80	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGCTCTGCCTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	82297761	82295389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_82295669_82297599
75667	chr6	+	812	1	FSM	ENSMUSG00000107402.2	ENSMUST00000203932.2	3479	1	-32	2699	-32	-2699	mono-exon	FALSE	NA	NA	NA	NA	NA	29	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTGACTTTGAGCATATTG	4208	False	NA	NA	False	NA	NA	NA	148113718	148114530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148113700_148114500
75668	chr1	-	543	4	ISM	ENSMUSG00000026004.16	ENSMUST00000129190.8	3470	14	23103	42818	23103	14932	internal_fragment	FALSE	canonical	3	6	junction_3	3.74165738677394	3	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACTGGACTCCCGAGGT	343	False	NA	NA	False	NA	NA	NA	66817266	66801224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_66801412_66812064_66812187_66812580_66812674_66817125
75669	chr14	-	538	2	NNC	ENSMUSG00000115611.2	novel	1024	2	NA	NA	-6342	-370	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	3	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGTTGCTAGAAAAGGTA	NA	False	NA	NA	False	NA	NA	NA	73085026	73078531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_73078835_73084791
75670	chr18	+	512	2	ISM	ENSMUSG00000118139.2	ENSMUST00000237736.2	700	3	712	1	712	-1	3prime_fragment	FALSE	canonical	3	11	junction_1	0	22	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCTTAAGTGTCTCCTCA	NA	False	NA	NA	False	NA	NA	NA	47866886	47878003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_47867032_47877636
75672	chr6	+	532	4	ISM	ENSMUSG00000030116.15	ENSMUST00000118626.8	748	9	8214	0	-626	0	3prime_fragment	FALSE	canonical	1	2	junction_1	68.5921926234239	4	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	7105	False	NA	NA	False	NA	NA	NA	122498831	122505591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122498888_122502909_122502998_122503745_122503820_122505277
75673	chr8	+	497	4	NNC	ENSMUSG00000003812.14	novel	590	4	NA	NA	0	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	39.4658783705058	45	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAGAAAAAGAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	85635318	85638052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635571_85635792_85635885_85635896_85637966
75675	chr6	-	869	2	FSM	ENSMUSG00000014704.11	ENSMUST00000014848.11	1775	2	467	439	467	-439	multi-exon	FALSE	canonical	0	0	junction_1	0	4	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACGCCTTTGACCAGG	NA	False	NA	NA	False	NA	NA	NA	52141344	52139835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_52140606_52141245
75676	chr19	+	1310	9	NNC	ENSMUSG00000025091.5	novel	1572	12	NA	NA	2859	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1.31695671910659	5	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGTTCAGGTGTAGCA	6873	False	NA	NA	False	NA	NA	NA	58751009	58765961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_58751327_58751760_58751873_58753159_58753280_58754693_58754814_58756995_58757115_58759765_58759896_58762501_58762614_58763569_58763738_58765849
75677	chr1	-	813	1	ISM	ENSMUSG00000042197.14	ENSMUST00000044455.8	11876	4	16067	5555	2264	-5555	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGGAGTCCCATTTTTG	1432	False	NA	NA	False	NA	NA	NA	33837584	33836771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_33836800_33837600
75678	chr5	-	856	1	Antisense	novelGene_ENSMUSG00000029439.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCCCTAAGAGCAAGGTC	NA	False	NA	NA	False	NA	NA	NA	129580110	129579254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129579300_129580100
75679	chr15	+	318	1	ISM	ENSMUSG00000042622.15	ENSMUST00000229130.2	1873	3	12022	112	10241	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATTTGCGCAGCTCC	NA	False	NA	NA	False	NA	NA	NA	79242842	79243160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_79242800_79243200
75680	chr2	+	888	1	Intergenic	novelGene_2601	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGCATGGCACGGTGCG	NA	False	NA	NA	False	NA	NA	NA	31195099	31195987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_31195100_31196000
75681	chr11	+	626	1	NIC	ENSMUSG00000042569.14	novel	1553	7	NA	NA	48	-27071	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGTTAATACATACGCCT	NA	False	NA	NA	False	NA	NA	NA	60721552	60722178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_60721600_60722200
75682	chr14	+	632	2	NNC	ENSMUSG00000094825.9	novel	1813	6	NA	NA	-151682	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	1	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	NA	NA	NA	16862623	17031708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_16863058_17031510
75683	chr4	+	806	2	FSM	ENSMUSG00000028890.14	ENSMUST00000147452.2	781	2	-22	-3	11	3	multi-exon	FALSE	canonical	3	116	junction_1	0	226	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATTCATGTTTATACTG	330	False	NA	NA	False	NA	NA	NA	124696352	124699174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124696437_124698452
75684	chr15	-	761	5	FSM	ENSMUSG00000022236.11	ENSMUST00000110408.3	957	5	172	24	172	-24	multi-exon	FALSE	canonical	0	0	junction_1	1.6583123951777	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATACAGCTTGTCATTAC	NA	False	NA	NA	False	NA	NA	NA	31453711	31441380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31441527_31443437_31443614_31449109_31449272_31451227_31451352_31453558
75685	chr8	-	197	1	Intergenic	novelGene_1575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTAATAAAATAAAATAAA	NA	False	NA	-94	True	NA	NA	NA	13268541	13268344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_13268300_13268500
75686	chr12	+	324	1	Intergenic	novelGene_4472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGCAGAGAAGGCCAAG	NA	False	NA	NA	False	NA	NA	NA	109915273	109915597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_109915300_109915600
75693	chr4	+	340	1	Intergenic	novelGene_1997	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCAATTATTTTGGAAGCA	NA	False	NA	NA	False	NA	NA	NA	139871958	139872298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_139872000_139872300
75696	chr2	-	564	1	Intergenic	novelGene_2829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCACGAAGAAAGATTGTT	NA	False	NA	NA	False	NA	NA	NA	174108799	174108235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_174108200_174108800
75697	chr19	-	1009	1	Antisense	novelGene_ENSMUSG00000024959.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTACAAAAAGTTTACAGTG	5696	False	NA	NA	False	NA	NA	NA	6928856	6927847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_6927800_6928900
75698	chr5	+	965	1	FSM	ENSMUSG00000086368.3	ENSMUST00000201195.2	1155	1	197	-7	126	7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATGAAATAAAACGAGTC	1177	False	NA	NA	False	NA	NA	NA	115439391	115440356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115439400_115440400
75701	chr9	-	530	2	Antisense	novelGene_ENSMUSG00000049010.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	55	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGGCCAGAGTTAGAGAC	NA	False	NA	NA	False	NA	NA	NA	40063272	39970086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_39970551_40063206
75703	chr1	+	917	6	ISM	ENSMUSG00000073664.12	ENSMUST00000162291.8	5000	31	51904	251	28283	-251	3prime_fragment	FALSE	canonical	2	5	junction_3	9.38083151964686	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATACATAAGTTGTAGG	8001	False	NA	NA	False	NA	NA	NA	60351376	60370374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_60351405_60358475_60358593_60358829_60358992_60367218_60367368_60368485_60368622_60370049
75705	chr3	-	365	3	ISM	ENSMUSG00000028187.11	ENSMUST00000199079.2	1978	5	3662	1256	3302	-1256	3prime_fragment	FALSE	canonical	3	569	junction_1	23.5	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCCAGAATGGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	146223504	146217805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_146218051_146218570_146218667_146223480
75706	chr2	+	465	2	ISM	ENSMUSG00000056738.12	ENSMUST00000165505.3	2181	4	6387	7251	-2607	-5968	internal_fragment	FALSE	canonical	3	9	junction_1	0	23	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATGAATGACATAGGTG	1325	False	NA	NA	False	NA	NA	NA	129067334	129067923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_129067517_129067640
75709	chr15	+	652	2	ISM	ENSMUSG00000023047.12	ENSMUST00000162893.2	611	3	164	-82	0	-3	3prime_fragment	FALSE	canonical	3	16	junction_1	0	72	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCACACTCTTCATCAATGT	NA	False	NA	NA	False	NA	NA	NA	102360757	102363062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102360995_102362647
75710	chr8	+	1392	1	NIC	ENSMUSG00000046413.15	novel	2990	4	NA	NA	1648	-39	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTAAATTGAGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	92530450	92531842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_92530400_92531800
75711	chr5	+	471	3	Intergenic	novelGene_751	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGAGATCTTGGATGAA	NA	False	NA	NA	False	NA	NA	NA	94924305	94926911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_94924376_94926046_94926362_94926825
75712	chr17	+	464	3	FSM	ENSMUSG00000036214.15	ENSMUST00000173814.2	1020	3	5	551	5	130	multi-exon	FALSE	canonical	3	19	junction_1	112	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAGAGAGAGACAGAAACAG	NA	False	NA	NA	False	NA	NA	NA	37269537	37275963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_37269688_37275248_37275325_37275725
75713	chr11	+	1449	1	NIC	ENSMUSG00000020463.16	novel	2410	12	NA	NA	939	-12216	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAACTTTTGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	29124685	29126134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29124700_29126100
75715	chr7	+	676	1	FSM	ENSMUSG00000052629.6	ENSMUST00000064591.5	2205	1	12	1517	12	-1517	mono-exon	FALSE	NA	NA	NA	NA	NA	25	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAATGCGAGCTATTTC	NA	False	NA	NA	False	NA	NA	NA	78228589	78229265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_78228600_78229300
75717	chr16	-	767	1	Intergenic	novelGene_3873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATCATTTACAAAATTACA	1462	False	NA	NA	False	NA	NA	NA	94525372	94524605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_94524600_94525400
75719	chr3	-	762	1	Antisense	novelGene_ENSMUSG00000028023.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGTCTTTCTTCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	129010887	129010125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_129010100_129010900
75722	chr7	-	1230	1	Intergenic	novelGene_2993	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTAATCTTGATTTTAT	NA	False	NA	NA	False	NA	NA	NA	92316772	92315542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_92315500_92316800
75723	chr7	-	646	4	ISM	ENSMUSG00000073795.12	ENSMUST00000209335.2	898	6	1527	-63	1527	63	3prime_fragment	FALSE	canonical	0	0	junction_2	1.24721912892465	12	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAGATTTGAGTTTGGT	NA	False	NA	NA	False	NA	NA	NA	139557105	139552291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_139552521_139555774_139555872_139556387_139556587_139556984
75724	chr8	+	547	5	NNC	ENSMUSG00000004637.16	novel	2244	9	NA	NA	-3707	84537	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	52.3378448161557	2	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAAGTCATTTGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	115171242	115325565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115325392
75725	chr7	+	321	2	NNC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	-10	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	51	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATTCTACATGTTGGCT	NA	False	NA	NA	False	NA	NA	NA	24206513	24215080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24206778_24215023
75726	chr15	-	1034	6	FSM	ENSMUSG00000033029.13	ENSMUST00000190730.7	691	6	15	-358	11	2	multi-exon	FALSE	canonical	2	4	junction_1	2.56124969497314	16	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACATGTGCCACCTTGTT	3730	False	NA	NA	False	NA	NA	NA	79025419	79018858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79019423_79019552_79019654_79019836_79019966_79023437_79023501_79025080_79025193_79025354
75727	chr10	+	576	4	ISM	ENSMUSG00000020085.16	ENSMUST00000080099.6	1329	9	5232	10359	-2267	373	internal_fragment	FALSE	canonical	3	156	junction_3	14.522013940528	123	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCCTATGTATTATATA	NA	False	NA	NA	False	NA	NA	NA	61561659	61564073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_61561834_61562143_61562260_61563425_61563546_61563907
75728	chr2	+	494	2	FSM	ENSMUSG00000039849.7	ENSMUST00000145327.2	611	2	79	38	26	-38	multi-exon	FALSE	canonical	3	441	junction_1	0	595	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTATGATGTCGTTAACA	5975	False	NA	NA	False	NA	NA	NA	164721302	164725081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164721410_164724694
75729	chr17	-	702	2	Antisense	novelGene_ENSMUSG00000002257.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATCTGATCACAGCTAC	8079	False	NA	NA	False	NA	NA	NA	28447570	28446697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_28446870_28447040
75730	chrX	+	1974	15	ISM	ENSMUSG00000062393.15	ENSMUST00000145302.3	7849	28	100015	3453	100015	-3453	3prime_fragment	FALSE	canonical	0	0	junction_2	0.349927106111883	2	43	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGGCCAAAGATTCTTGT	NA	False	NA	NA	False	NA	NA	NA	6790424	6811149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_6790503_6792182_6792412_6794162_6794277_6794687_6794785_6796105_6796214_6799140_6799238_6799476_6799585_6800202_6800317_6800656_6800792_6801939_6802101_6802868_6803011_6804538_6804626_6807048_6807160_6809815_6809943_6810883
75731	chr4	+	1153	5	ISM	ENSMUSG00000039774.13	ENSMUST00000107744.2	2077	9	21829	0	21829	0	3prime_fragment	FALSE	canonical	3	19	junction_1	5.67890834580027	9	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGTTGATGCCACAGCCAA	NA	False	NA	NA	False	NA	NA	NA	47113751	47123043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_47113905_47117903_47118036_47119514_47119629_47120361_47120509_47122436
75732	chr1	-	505	3	FSM	ENSMUSG00000097648.2	ENSMUST00000180837.2	1009	3	24	480	24	-480	multi-exon	FALSE	canonical	1	2	junction_2	1.5	37	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACTTTTGAATGTAAAT	NA	False	NA	NA	False	NA	NA	NA	113891840	113819594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_113819779_113837064_113837094_113891548
75733	chr17	+	507	4	ISM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	-29	22579	4	-8249	5prime_fragment	FALSE	canonical	3	95	junction_2	191.701735922123	58	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTCTAATACACAACGGG	NA	False	NA	NA	False	NA	NA	NA	26471943	26477118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899
75734	chr9	-	1025	1	Intergenic	novelGene_1106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGAGGTGTGCCTTACT	8223	False	NA	NA	False	NA	NA	NA	70449668	70448643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_70448600_70449700
75735	chr5	+	1091	2	Intergenic	novelGene_673	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	9	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTGCTTGTTTTAATTA	NA	False	NA	NA	False	NA	NA	NA	25704856	25709469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_25705645_25709166
75736	chr7	+	830	1	Intergenic	novelGene_2966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGTTACAGGTGGGGCAT	NA	False	NA	NA	False	NA	NA	NA	46569772	46570602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_46569800_46570600
75739	chr11	+	562	1	ISM	ENSMUSG00000016940.19	ENSMUST00000103035.10	1764	6	10528	57	1303	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	24	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCTAAAAGTGGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	115321481	115322043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_115321500_115322000
75741	chr14	+	703	3	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10597	225	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	1.5	126	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTACCCATGGAGTTCAGT	NA	False	NA	NA	False	NA	NA	NA	76753434	76768411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76753538_76766569_76766669_76767910
75744	chr8	+	513	4	ISM	ENSMUSG00000050357.10	ENSMUST00000212643.2	2235	8	2186	-52	2186	8	3prime_fragment	FALSE	canonical	3	41	junction_1	6.94422221866655	40	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGTGGAATACTGTCTGT	8475	False	NA	NA	False	NA	NA	NA	106423881	106424827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106424071_106424192_106424274_106424499_106424578_106424662
75745	chr19	-	840	1	Antisense	novelGene_ENSMUSG00000025203.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGCTACGGGCACTTGAG	NA	False	NA	NA	False	NA	NA	NA	44295303	44294463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44294500_44295300
75746	chr16	+	768	4	ISM	ENSMUSG00000068663.15	ENSMUST00000038145.13	3730	21	-28	127104	4	5179	5prime_fragment	FALSE	canonical	3	48	junction_3	11.9536140513607	31	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAATAAAATTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	10363244	10386488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_10363507_10377884_10378014_10381000_10381135_10386245
75748	chr15	-	807	4	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	-11	38053	-1	-37281	5prime_fragment	FALSE	canonical	3	81	junction_3	2.82842712474619	32	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTAGACTTTACCTTT	NA	False	NA	NA	False	NA	NA	NA	79489311	79483864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79484394_79485717_79485763_79486601_79486686_79489162
75750	chr14	-	871	4	ISM	ENSMUSG00000022090.11	ENSMUST00000153735.8	1578	10	8775	18	-71	-18	3prime_fragment	FALSE	canonical	1	1	junction_2	0.942809041582063	13	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACGTGGATAAAATTAAGT	NA	False	NA	NA	False	NA	NA	NA	70405493	70401697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70402243_70403538_70403657_70405109_70405238_70405413
75751	chr5	-	816	10	FSM	ENSMUSG00000029236.5	ENSMUST00000031146.3	828	10	-7	19	-7	-19	multi-exon	TRUE	canonical	1	2	junction_2	1.03040205505508	16	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGCATCTTGAAATGTAT	NA	False	NA	NA	False	NA	NA	NA	76511642	76481360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_76481525_76483669_76483710_76485284_76485339_76488608_76488678_76491768_76491820_76491910_76491941_76493285_76493346_76497958_76498007_76506197_76506257_76511401
75752	chr17	+	1048	2	FSM	ENSMUSG00000041354.17	ENSMUST00000172468.2	753	2	6	-301	6	301	multi-exon	FALSE	canonical	3	69	junction_1	0	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTTTCCACAGTAACCA	3201	False	NA	NA	False	NA	NA	NA	34148522	34149770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34149019_34149218
75753	chr2	+	804	3	NNC	ENSMUSG00000027132.4	novel	2886	10	NA	NA	34014	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTGATCTCAAAGAATGT	706	False	NA	NA	False	NA	NA	NA	112243584	112244571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_112243826_112243962_112244028_112244073
75754	chr3	-	916	2	Intergenic	novelGene_3193	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	15	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTTTTATGTTTCTGAG	NA	False	NA	NA	False	NA	NA	NA	145338745	145335211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_145335690_145338307
75755	chr11	-	322	1	NIC	ENSMUSG00000001323.18	novel	3699	9	NA	NA	0	-14235	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAGTACTAAAGTCTATG	NA	False	NA	NA	False	NA	NA	NA	74816484	74816162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_74816200_74816500
75757	chr9	+	1860	1	Antisense	novelGene_ENSMUSG00000032570.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAGCTTTAATCAATAC	NA	False	NA	NA	False	NA	NA	NA	105372508	105374368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_105372500_105374400
75758	chr4	-	750	7	NNC	ENSMUSG00000028356.5	novel	1268	10	NA	NA	4232	-12	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	3.45205252953466	35	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCCTAGCATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	63068178	63061523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_63061638_63061903_63062078_63062387_63062556_63063501_63063584_63066938_63066986_63067655_63067758_63068115
75759	chr16	-	685	3	FSM	ENSMUSG00000075370.13	ENSMUST00000100136.4	870	3	139	46	139	-43	multi-exon	FALSE	canonical	0	0	junction_2	2	15	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCTTTCCTGTGCCTAA	NA	False	NA	NA	False	NA	NA	NA	16681710	16678580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16678999_16680292_16680409_16681559
75761	chr11	+	462	3	Intergenic	novelGene_2370	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	159	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGCGCAGTGCAGGGCGG	3232	False	NA	NA	False	NA	NA	NA	58210558	58214175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_58210774_58213388_58213556_58214095
75762	chr4	+	860	1	Antisense	novelGene_ENSMUSG00000028438.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAAGCCCTAAGGCCGG	NA	False	NA	NA	False	NA	NA	NA	41463913	41464773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41463900_41464800
75763	chr1	-	399	3	Intergenic	novelGene_351	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_2	28.5	2	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCTTTGTGAGATCTT	NA	False	NA	NA	False	NA	NA	NA	21326180	21323509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_21323669_21324392_21324563_21326110
75764	chrX	-	953	5	Genic_Genomic	ENSMUSG00000081194.2	novel	988	2	NA	NA	-31712	5797	multi-exon	FALSE	canonical	1	1	junction_3	1.08972473588517	7	29	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCTGTTTTTTATATA	NA	False	NA	NA	False	NA	NA	NA	149740867	149701818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_149701994_149708729_149709193_149716317_149716396_149740295_149740429_149740763
75766	chr1	-	1096	1	Intergenic	novelGene_373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTCTGTTATCATAGT	NA	False	NA	NA	False	NA	NA	NA	59802466	59801370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_59801400_59802500
75767	chr2	-	174	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11350	18	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCAGCAAGGACACTGAG	NA	False	NA	NA	False	NA	NA	NA	11426191	11413823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11413854_11426047
75768	chr19	+	742	3	NNC	ENSMUSG00000118032.2	novel	602	2	NA	NA	-16255	55	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	2	64	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGCCTTCTGACTCTCTT	NA	False	NA	NA	False	NA	NA	NA	36212871	36233791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_36212985_36219029_36219176_36233308
75769	chr10	-	524	3	Antisense	novelGene_ENSMUSG00000037846.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.5	37	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCAAACGGTCATAT	NA	False	NA	NA	False	NA	NA	NA	67879984	67877177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_67877398_67877529_67877608_67879758
75770	chr2	+	1292	1	NIC	ENSMUSG00000026857.10	novel	981	4	NA	NA	4409	-2288	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTGCCAAGAAAGTTC	NA	False	NA	NA	False	NA	NA	NA	30702610	30703902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30702600_30703900
75771	chr18	+	975	2	ISM	ENSMUSG00000025425.19	ENSMUST00000079618.11	1989	7	67214	153	-2847	-153	3prime_fragment	FALSE	canonical	1	1	junction_1	0	3	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGACCAGCCATTTGCAC	NA	False	NA	NA	False	NA	NA	NA	77340762	77342993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_77340806_77342061
75772	chr8	+	1206	1	Intergenic	novelGene_1686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAATAGATGTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	87370071	87371277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_87370100_87371300
75777	chr8	-	967	1	Intergenic	novelGene_1708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATTGGACTTCACCTCTC	NA	False	NA	NA	False	NA	NA	NA	93062297	93061330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_93061300_93062300
75778	chr12	-	1006	2	Antisense	novelGene_ENSMUSG00000097391.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCACCTCAGGAGATGTGA	NA	False	NA	NA	False	NA	NA	NA	109712019	109710805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_109711166_109711373
75779	chr8	+	1158	4	Genic_Genomic	ENSMUSG00000110630.2	novel	1516	1	NA	NA	-5533	-979	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	19	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGCAGCCACAAAGAGGG	NA	False	NA	NA	False	NA	NA	NA	105163369	105169439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_105164226_105167107_105167219_105169101_105169178_105169324
75780	chr3	+	397	1	Intergenic	novelGene_3196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGTACAGTGAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152415110	152415507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_152415100_152415500
75781	chr13	+	682	2	Intergenic	novelGene_1329	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGGTTTGCAGCGAT	NA	False	NA	NA	False	NA	NA	NA	23721721	23722449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_23722084_23722129
75784	chr7	+	653	1	FSM	ENSMUSG00000097585.3	ENSMUST00000181784.2	1100	1	438	9	432	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTCTTTCCAAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	89630394	89631047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_89630400_89631000
75786	chr8	-	548	3	ISM	ENSMUSG00000074240.6	ENSMUST00000098630.5	585	5	5435	-41	5435	-2	3prime_fragment	FALSE	canonical	3	13	junction_2	0.5	22	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGATCTCTGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	72961228	72958180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_72958275_72959406_72959603_72960970
75787	chr4	+	545	1	ISM	ENSMUSG00000029071.17	ENSMUST00000030948.16	3358	15	11272	85	4102	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	44	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACATAGAGCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	155943130	155943675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_155943100_155943700
75789	chr7	-	723	1	Intergenic	novelGene_2875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAATCTAATCAAAATTCT	NA	False	NA	NA	False	NA	NA	NA	6576125	6575402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_6575400_6576100
75792	chr17	-	761	4	NIC	ENSMUSG00000024295.10	novel	897	4	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	1.24721912892465	27	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGACTCTGATATTCATT	NA	False	NA	NA	False	NA	NA	NA	33184668	33174974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_33175278_33176622_33176849_33179548_33179752_33184639
75793	chrX	-	976	3	NIC	ENSMUSG00000087174.8	novel	659	4	NA	NA	47	-12	intron_retention	FALSE	canonical	0	0	junction_1	0	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTGGTACTCAAATTATA	NA	False	NA	NA	False	NA	NA	NA	104122972	104118643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104119466_104121624_104121758_104122951
75796	chr13	-	361	2	Genic_Genomic	ENSMUSG00000079941.2	novel	390	1	NA	NA	-7	87	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	21685595	21685111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_21685313_21685435
75799	chr2	+	916	3	FSM	ENSMUSG00000017734.16	ENSMUST00000017878.3	1338	3	419	3	419	-3	multi-exon	FALSE	canonical	3	4	junction_1	0	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTCACCTCATTCTTCA	NA	False	NA	NA	False	NA	NA	NA	164330159	164332684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164330309_164330487_164330626_164332055
75801	chr13	-	780	4	ISM	ENSMUSG00000021684.18	ENSMUST00000162882.2	2060	9	13043	612	1230	161	3prime_fragment	TRUE	canonical	1	2	junction_3	2.44948974278318	11	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAATCACTCAGTGACAA	NA	False	NA	NA	False	NA	NA	NA	95169531	95162449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_95162738_95164125_95164256_95166820_95166989_95169337
75805	chr4	-	1329	1	Genic_Genomic	ENSMUSG00000086096.2	novel	NA	NA	NA	NA	384	336	mono-exon	FALSE	NA	NA	NA	NA	NA	10	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGTAGTACAGGTGAGAGG	NA	False	NA	NA	False	NA	NA	NA	99542836	99541507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_99541500_99542800
75807	chr11	-	504	2	FSM	ENSMUSG00000085152.2	ENSMUST00000128078.2	581	2	26	51	26	-51	multi-exon	FALSE	canonical	3	19	junction_1	0	89	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCTGGTGAGATGTCTC	9065	False	NA	NA	False	NA	NA	NA	88887344	88883916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88884304_88887227
75808	chr11	-	173	1	Intergenic	novelGene_2440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	156	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAGGAAGCAAGAGA	NA	False	NA	NA	False	NA	NA	NA	87374928	87374755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_87374800_87374900
75810	chr2	-	259	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	9	-97	9	97	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	172351602	172351343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172351300_172351600
75811	chr12	-	935	1	Intergenic	novelGene_4473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCAATCAGAGCAACTTCC	NA	False	NA	NA	False	NA	NA	NA	110248471	110247536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_110247500_110248500
75812	chr14	-	744	1	Intergenic	novelGene_567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGCTTTCCTTTCCTCC	NA	False	NA	NA	False	NA	NA	NA	51021422	51020678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_51020700_51021400
75818	chr11	-	599	3	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	132	279	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	NA	False	NA	NA	NA	62172193	62158049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_62158433_62159529_62159635_62172082
75820	chr18	+	538	1	FSM	ENSMUSG00000073590.4	ENSMUST00000097608.3	2831	1	60	2233	60	-2233	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGATCCTCATTGACATC	NA	False	NA	NA	False	NA	NA	NA	37789019	37789557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_37789000_37789600
75821	chr18	+	647	1	FSM	ENSMUSG00000073590.4	ENSMUST00000097608.3	2831	1	2103	81	2103	-81	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAGAAATGTAAATTACT	NA	False	NA	NA	False	NA	NA	NA	37791062	37791709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_37791100_37791700
75823	chr19	-	1285	1	Intergenic	novelGene_1298	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAGAATTTTTATTTTA	6797	False	NA	NA	False	NA	NA	NA	60775418	60774133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_60774100_60775400
75825	chr1	+	985	1	ISM	ENSMUSG00000034107.11	ENSMUST00000186641.7	3984	24	29277	112	1346	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGATGGTTAGTTGCTAG	NA	False	NA	NA	False	NA	NA	NA	93330928	93331913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_93330900_93331900
75826	chr4	-	334	2	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-228	-4037	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	0	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTCCAGCTGCAATGTG	307	False	NA	NA	False	NA	NA	NA	141546741	141546309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141546439_141546536
75828	chr4	+	1349	1	Antisense	novelGene_ENSMUSG00000029036.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTAAATGCAGTCCTTAT	6096	False	NA	NA	False	NA	NA	NA	155837760	155839109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_155837800_155839100
75829	chr1	+	567	2	NNC	ENSMUSG00000100819.2	novel	571	5	NA	NA	-12464	421	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	13	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACATTTTTGTAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	21236747	21258072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_21236776_21257533
75830	chr4	+	599	1	NIC	ENSMUSG00000039953.14	novel	4459	18	NA	NA	2320	-2125	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGTATTATATAAATGAA	NA	False	NA	NA	False	NA	NA	NA	149713906	149714505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_149713900_149714500
75831	chr4	+	873	1	Intergenic	novelGene_1939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAGGAAAAGGAAAAGG	NA	False	NA	NA	False	NA	NA	NA	123391871	123392744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_123391900_123392700
75832	chr13	+	434	3	ISM	ENSMUSG00000021496.13	ENSMUST00000021958.6	544	4	5567	4	5567	-4	3prime_fragment	FALSE	canonical	3	322	junction_2	12	44	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAAGCCTGAGTTATTTG	NA	False	NA	NA	False	NA	NA	NA	55880747	55924637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55880881_55923179_55923261_55924417
75833	chr5	-	670	5	FSM	ENSMUSG00000029322.13	ENSMUST00000031264.12	744	5	23	51	23	-49	multi-exon	TRUE	canonical	1	1	junction_1	0.82915619758885	21	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCTTACATTTTAGGTA	NA	False	NA	NA	False	NA	NA	NA	100720088	100701641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100701855_100704345_100704462_100707617_100707743_100710490_100710629_100720010
75834	chr9	+	621	1	Intergenic	novelGene_1147	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGCTTACACAGCTTT	NA	False	NA	NA	False	NA	NA	NA	98752553	98753174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_98752600_98753200
75835	ERCC-00165	+	853	1	FSM	ERCC-00165A	DQ668363	856	1	3	0	3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	3	856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00165_+_0_900
75837	chr4	+	586	2	Antisense	novelGene_ENSMUSG00000028399.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	44	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCATTAATGTTTAGCA	NA	False	NA	NA	False	NA	NA	NA	77229043	77232610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_77229411_77232391
75838	chr11	-	550	4	FSM	ENSMUSG00000049154.13	ENSMUST00000239007.2	561	4	8	3	8	-3	multi-exon	FALSE	canonical	3	25	junction_1	3.29983164553722	138	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTACAGAAGACTATGTCAC	NA	False	NA	NA	False	NA	NA	NA	58692778	58683631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_58683826_58687380_58687485_58689461_58689522_58692586
75839	chr18	+	710	2	Intergenic	novelGene_4571	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTTACTGCAAAGACAAT	4771	False	NA	NA	False	NA	NA	NA	76347829	76349425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_76348077_76348962
75841	chr2	-	348	1	Intergenic	novelGene_2810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATGACTATGTTGAAT	9589	False	NA	NA	False	NA	NA	NA	170461126	170460778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_170460800_170461100
75843	chr3	-	1070	1	ISM	ENSMUSG00000040969.15	ENSMUST00000147041.10	6541	14	118306	3236	20719	918	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAGCTGTCATAAATGA	NA	False	NA	NA	False	NA	NA	NA	132822344	132821274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_132821300_132822300
75844	chr19	-	519	3	NNC	ENSMUSG00000061451.14	novel	633	3	NA	NA	-630	4	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	1	102	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTTTCTCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	5122790	5120882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5121140_5121754_5121923_5122696
75846	chr16	-	624	5	FSM	ENSMUSG00000022604.19	ENSMUST00000121703.3	609	5	-32	17	-10	-17	multi-exon	FALSE	canonical	3	9	junction_1	14.2653426176871	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATCTAAACCAAAATCA	NA	False	NA	NA	False	NA	NA	NA	55755228	55744935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_55745043_55745331_55745434_55748083_55748243_55750828_55750972_55755115
75847	ERCC-00095	+	493	1	FSM	ERCC-00095A	DQ516759	513	1	0	20	0	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	29	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGATTTGGTTTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	0	493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00095_+_0_500
75849	chr7	+	546	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208698.2	551	3	-2	7	2	-6	multi-exon	FALSE	canonical	3	17	junction_2	14	28	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAAATTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	66872359	66874368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_66872378_66873356_66873640_66874123
75850	chr18	+	434	3	FSM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	-1	-3	-1	3	multi-exon	FALSE	canonical	3	377	junction_1	24	3931	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGTATGTTGTGTGATT	NA	False	NA	NA	False	NA	NA	NA	33927943	33929042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_33928178_33928435_33928499_33928905
75851	chr2	-	845	1	Intergenic	novelGene_2709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGTAAAGAAATGTGTATG	NA	False	NA	NA	False	NA	NA	NA	130116101	130115256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_130115300_130116100
75853	chr6	-	103	1	Intergenic	novelGene_4123	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCACCATGTGATTGC	NA	False	NA	NA	False	NA	NA	NA	17707548	17707445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_17707400_17707500
75855	chrX	+	739	1	Intergenic	novelGene_4055	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTATTTGAAATTAACATTA	NA	False	NA	NA	False	NA	NA	NA	134253861	134254600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_134253900_134254600
75856	chr13	+	1033	3	NNC	ENSMUSG00000114203.2	novel	960	2	NA	NA	-16483	19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	26	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGTGCAGAGTAAGAACA	NA	False	NA	NA	False	NA	NA	NA	99114175	99133945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_99114293_99132947_99133008_99133089
75858	chr6	-	457	4	NNC	ENSMUSG00000032757.7	novel	1516	4	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.28781453601	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGGCTTTGAATTTGTT	14	True	NA	NA	False	NA	NA	NA	4086923	4077871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_4078013_4079973_4080018_4082457_4082583_4086776
75859	chr6	-	762	3	Intergenic	novelGene_4189	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	86	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTCTCCTTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	78847524	78818615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_78818671_78833904_78833984_78846896
75860	chr11	-	1004	3	ISM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	83076	50209	-21739	-19864	internal_fragment	FALSE	canonical	3	236	junction_2	32	1	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCCCAAGCCCCCTGAA	NA	False	NA	NA	False	NA	NA	NA	35788278	35779435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_35780234_35782275_35782406_35788202
75861	chr17	+	908	2	ISM	ENSMUSG00000024399.6	ENSMUST00000173600.2	905	3	428	21	428	-3	3prime_fragment	FALSE	canonical	3	5	junction_1	0	5	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATGCCGGCCCTTGCCAG	NA	False	NA	NA	False	NA	NA	NA	35414029	35415275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35414342_35414679
75863	chr10	-	1038	1	Genic_Genomic	ENSMUSG00000019795.18	novel	NA	NA	NA	NA	-4	-31138	mono-exon	FALSE	NA	NA	NA	NA	NA	3	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATAGTAAAAATCCCTAAT	NA	False	NA	NA	False	NA	NA	NA	7556904	7555866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_7555900_7556900
75864	chr8	-	881	4	ISM	ENSMUSG00000034845.7	ENSMUST00000048452.6	1987	6	4040	12	4040	-12	3prime_fragment	FALSE	canonical	3	9	junction_3	3.77123616632825	20	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCCTTTGAAGACTGGTT	NA	False	NA	NA	False	NA	NA	NA	71960356	71950420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71951050_71959480_71959563_71959663_71959722_71960244
75865	chr19	-	1078	3	ISM	ENSMUSG00000052942.14	ENSMUST00000162873.8	1323	5	16598	-29	79	29	3prime_fragment	FALSE	canonical	1	5	junction_1	3	1	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTATTTACATCTACTT	NA	False	NA	NA	False	NA	NA	NA	28261227	28239796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_28240516_28241261_28241445_28261051
75867	chr7	-	521	2	FSM	ENSMUSG00000040390.14	ENSMUST00000152032.2	574	2	40	13	40	9	multi-exon	FALSE	canonical	3	17	junction_1	0	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAAAGAAACAGACTT	2057	False	NA	NA	False	NA	NA	NA	27364492	27363595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_27363999_27364374
75870	chr7	+	489	2	Antisense	novelGene_ENSMUSG00000030403.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGAGGAACCAGCCCCAA	3332	False	NA	NA	False	NA	NA	NA	18990853	18991383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_18991233_18991273
75871	chr2	-	1177	7	NNC	ENSMUSG00000053166.15	novel	3702	12	NA	NA	37624	-1637	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	6.90410505906933	11	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCCTGAATAAAAATGACT	NA	False	NA	NA	False	NA	NA	NA	164985755	164955883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164955984_164958059_164958312_164965435_164965554_164965641_164965764_164977103_164977241_164983973_164984228_164985561
75872	chr12	+	1384	8	FSM	ENSMUSG00000021125.7	ENSMUST00000021550.7	1428	8	33	11	33	-11	multi-exon	FALSE	canonical	0	0	junction_1	0.728431359084683	4	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATATCATACTGGTCTTG	9121	False	NA	NA	False	NA	NA	NA	79177583	79203064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_79177755_79178614_79178688_79194361_79194540_79196642_79196803_79197505_79197601_79197726_79197832_79198695_79198833_79202599
75873	chr5	+	292	1	Intergenic	novelGene_848	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACCCTGGCTGTCCCGGA	NA	False	NA	NA	False	NA	NA	NA	121684157	121684449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_121684200_121684400
75874	chr8	+	804	2	ISM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	1011	308	1011	-308	3prime_fragment	FALSE	canonical	3	2955	junction_1	0	693	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCACGGTAGTGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	73073887	73075192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_73074087_73074587
75876	chr7	-	438	1	ISM	ENSMUSG00000107585.2	ENSMUST00000204020.2	1092	2	894	449	894	-449	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGTGGGGATCTAGGGG	NA	False	NA	NA	False	NA	NA	NA	3471067	3470629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_3470600_3471100
75877	chr4	+	713	2	Intergenic	novelGene_1906	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	27	junction_1	0	144	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTCGAAACCATCCTCT	NA	False	NA	NA	False	NA	NA	NA	99538518	99540108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_99538782_99539658
75878	chr2	+	465	2	Antisense	novelGene_ENSMUSG00000054057.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	45	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTACTTGTTTGAAGGC	4543	False	NA	NA	False	NA	NA	NA	18032508	18033222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_18032675_18032923
75879	chr16	-	516	3	NNC	ENSMUSG00000041720.15	novel	932	2	NA	NA	908	2679	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCAGGACAGGCGCGG	NA	False	NA	NA	False	NA	NA	NA	17101081	17095535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17095602_17095708_17095753_17100675
75882	chr1	+	549	4	NNC	ENSMUSG00000018189.13	novel	882	7	NA	NA	3678	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	585.01301030167	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGCTGGCTAAACTCCA	NA	False	NA	NA	False	NA	NA	NA	143674132	143682668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_143674232_143675657_143675773_143677872_143677968_143682428
75883	chr2	-	450	3	NNC	ENSMUSG00000075467.5	novel	2916	3	NA	NA	19	-2175	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	181	20	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCACCGGGCCTGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	26242093	26240307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26240571_26241346_26241477_26242036
75884	chr3	-	246	3	ISM	ENSMUSG00000037152.12	ENSMUST00000193279.2	315	4	-2	1792	-2	-1792	5prime_fragment	FALSE	canonical	3	6211	junction_1	126.5	17	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGAAATGGATTGGAATA	NA	False	NA	NA	False	NA	NA	NA	51316387	51314794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_51314834_51315565_51315670_51316284
75885	chr11	-	950	4	Antisense	novelGene_ENSMUSG00000020679.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGTCCTCCTCCCGACAC	NA	False	NA	NA	False	NA	NA	NA	83796264	83779903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_83780010_83784205_83784403_83787047_83787165_83795734
75888	chr15	-	826	1	Antisense	novelGene_ENSMUSG00000042622.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGGCTTCTATCTCAGA	NA	False	NA	NA	False	NA	NA	NA	79241906	79241080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79241100_79241900
75889	chr11	-	483	1	Intergenic	novelGene_2206	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTGATAGTGGGGTA	2727	False	NA	NA	False	NA	NA	NA	5738434	5737951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_5738000_5738400
75892	chr7	+	720	4	ISM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	1	10405	1	3505	5prime_fragment	FALSE	canonical	3	323	junction_3	14.9666295470958	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGCTAGCGTGTATTGT	NA	False	NA	NA	False	NA	NA	NA	121732264	121737862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470
75893	chr7	-	1347	1	Intergenic	novelGene_2974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAGCTTAGCACCTCAGT	NA	False	NA	NA	False	NA	NA	NA	64036974	64035627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_64035600_64037000
75895	chr2	-	318	3	FSM	ENSMUSG00000040591.19	ENSMUST00000139490.8	307	3	-10	-1	-4	1	multi-exon	FALSE	canonical	3	7	junction_1	64	92	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTCTTTTTTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	91274992	91249127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91249264_91252210_91252314_91274913
75897	chr8	-	615	2	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	51681	33669	-1925	-5798	internal_fragment	FALSE	canonical	2	3	junction_1	0	5	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGGACACGTGTGTACA	NA	False	NA	NA	False	NA	NA	NA	117757507	117756086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_117756475_117757280
75898	chr7	+	661	1	Antisense	novelGene_ENSMUSG00000038650.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGTCTCTGGATTATT	NA	False	NA	NA	False	NA	NA	NA	140752544	140753205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_140752500_140753200
75899	chr3	+	1278	8	NNC	ENSMUSG00000037797.15	novel	1314	9	NA	NA	2633	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1.82946406783796	4	27	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGCTTGCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	138123888	138136651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_138123988_138124950_138125090_138126385_138126474_138127922_138128155_138129754_138130016_138133707_138133862_138134797_138134937_138136485
75903	chr7	-	854	1	Antisense	novelGene_ENSMUSG00000030704.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGTATTTGCTATTCTGT	NA	False	NA	NA	False	NA	NA	NA	100290450	100289596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100289600_100290400
75904	chr2	-	1392	2	FSM	ENSMUSG00000046470.6	ENSMUST00000054491.6	1620	2	205	23	205	-23	multi-exon	FALSE	canonical	2	4	junction_1	0	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTTTTCTTTAAAAGG	1085	False	NA	NA	False	NA	NA	NA	181313228	181311651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_181312790_181312974
75905	chr3	+	722	5	ISM	ENSMUSG00000038354.14	ENSMUST00000122960.6	3295	14	14579	-21	4813	-2	3prime_fragment	FALSE	canonical	3	58	junction_4	19.7294196569489	88	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCTATTGTTGTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	96592221	96598346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96592491_96596461_96596552_96596760_96596827_96597507_96597613_96598154
75906	chr6	-	694	1	Antisense	novelGene_ENSMUSG00000055818.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAAAGTGGTGAGGTGT	8856	False	NA	NA	False	NA	NA	NA	124902895	124902201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_124902200_124902900
75907	chr19	-	1222	2	NNC	ENSMUSG00000094219.2	novel	1044	3	NA	NA	3930	606	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAATTATCATAATA	1664	False	NA	NA	False	NA	NA	NA	47142273	47139441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_47140549_47142158
75908	chr17	-	466	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174467.2	462	2	-5	1	-5	-1	multi-exon	FALSE	canonical	1	1	junction_1	0	103	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATATTCCCTTTTAC	1218	False	NA	NA	False	NA	NA	NA	34128188	34127156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34127561_34128126
75909	chr4	+	418	2	FSM	ENSMUSG00000078490.11	ENSMUST00000129481.2	689	2	47	224	-21	-224	multi-exon	FALSE	canonical	2	9	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTAATGGAGGTCTTTTCC	2311	False	NA	NA	False	NA	NA	NA	155493693	155500220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155494028_155500136
75910	chr8	+	300	2	ISM	ENSMUSG00000031762.8	ENSMUST00000212806.2	388	3	266	-4	266	0	3prime_fragment	FALSE	canonical	3	13494	junction_1	0	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	False	NA	NA	False	NA	NA	NA	94899753	94900196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_94899821_94899963
75911	chr16	-	968	2	Intergenic	novelGene_3650	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGGCGTTGGAGAGAT	4639	False	NA	NA	False	NA	NA	NA	37831170	37829314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_37830178_37831065
75912	chr1	-	158	1	Intergenic	novelGene_444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	176	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAACAAACAAACAAA	NA	False	NA	NA	False	NA	NA	NA	132963998	132963840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_132963800_132964000
75913	chr2	-	792	2	FSM	ENSMUSG00000086657.3	ENSMUST00000152524.2	801	2	94	-85	8	85	multi-exon	FALSE	canonical	3	11	junction_1	0	53	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTTATGGATTAGATTG	NA	False	NA	NA	False	NA	NA	NA	14078651	14075057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_14075592_14078393
75914	chr7	-	1194	1	ISM	ENSMUSG00000048330.15	ENSMUST00000133876.2	3258	5	35373	1363	9886	-1363	mono-exon	FALSE	NA	NA	NA	NA	NA	32	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTGCATCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108647145	108645951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_108646000_108647100
75915	chr6	-	485	1	FSM	ENSMUSG00000044927.7	ENSMUST00000056403.7	1217	1	730	2	730	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATTGTCGTTGTCTTGT	7639	False	NA	NA	False	NA	NA	NA	87957889	87957404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87957400_87957900
75916	chr18	-	1441	1	Genic_Genomic	ENSMUSG00000097330.3	novel	NA	NA	NA	NA	2875	489	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTCCCCTTGGTGTGTGT	8075	False	NA	NA	False	NA	NA	NA	37886132	37884691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_37884700_37886100
75917	chr8	+	396	3	FSM	ENSMUSG00000031760.10	ENSMUST00000034211.10	536	3	142	-2	3	2	multi-exon	FALSE	canonical	3	14	junction_2	1	118	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGACTGGTCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	94879376	94880776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94879459_94879652_94879719_94880528
75919	chr8	+	1018	1	Antisense	novelGene_ENSMUSG00000031561.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTAAAAGGATATCTTACA	NA	False	NA	NA	False	NA	NA	NA	48681758	48682776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_48681800_48682800
75924	chr15	-	529	4	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	12	63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3677.90967202235	1	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGTGGTACCCTTTTTT	867	False	NA	NA	False	NA	NA	NA	11996086	11984063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11984384_11986541_11986628_11993874_11993948_11996036
75926	chr7	-	1035	2	ISM	ENSMUSG00000045777.15	ENSMUST00000084412.6	1158	3	948	26	948	-26	3prime_fragment	FALSE	canonical	1	2	junction_1	0	5	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCATTAAAACATGTGCTC	NA	False	NA	NA	False	NA	NA	NA	141925048	141909270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_141909852_141924594
75927	chr6	-	1292	6	NNC	ENSMUSG00000030201.16	novel	2756	11	NA	NA	5594	-64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	41.1164200776284	1	65	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTTTTATTTTTGCAAA	NA	False	NA	NA	False	NA	NA	NA	134436377	134427509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_134428044_134430512_134430611_134431659_134431791_134433013_134433249_134434620_134434732_134436194
75928	chr7	-	393	5	NNC	ENSMUSG00000003429.12	novel	661	5	NA	NA	5	18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12424.5540035649	2	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAACAAATAAAGTTATTT	NA	False	NA	NA	False	NA	NA	NA	44773754	44771838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44771920_44772312_44772383_44772586_44772663_44772842_44772975_44773720
75929	chr11	+	959	1	FSM	ENSMUSG00000050288.7	ENSMUST00000057893.7	3663	1	1220	1484	1220	-1484	mono-exon	FALSE	NA	NA	NA	NA	NA	9	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAACCATTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	102496441	102497400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102496400_102497400
75931	chr5	-	479	4	NNC	ENSMUSG00000053553.12	novel	2030	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	336.455049003578	52	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	139446283	139345493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_139345741_139349876_139349919_139441171_139441302_139446223
75932	chr5	+	418	1	NIC	ENSMUSG00000029725.11	novel	956	4	NA	NA	138	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCCCCTAAATTACCGAAC	NA	False	NA	NA	False	NA	NA	NA	137777943	137778361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_137777900_137778400
75934	chr7	-	692	1	Genic_Genomic	ENSMUSG00000038406.18	novel	NA	NA	NA	NA	-128	-1090	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGCTGGGAATTTTATCC	5432	False	NA	NA	False	NA	NA	NA	44665409	44664717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_44664700_44665400
75935	chr4	+	176	1	Intergenic	novelGene_1925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACAATTGCAAGAAT	NA	False	NA	NA	False	NA	NA	NA	108760809	108760985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_108760800_108761000
75936	chr6	-	274	1	Antisense	novelGene_ENSMUSG00000071419.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTTGGTCTTTCTCAAG	NA	False	NA	NA	False	NA	NA	NA	57994960	57994686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_57994700_57995000
75937	chr15	+	1302	1	Intergenic	novelGene_3319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAATGAATAAACAGGTA	NA	False	NA	NA	False	NA	NA	NA	78806215	78807517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_78806200_78807500
75940	chr8	+	857	1	Intergenic	novelGene_1639	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAGAAGTGGTCAAACTT	NA	False	NA	NA	False	NA	NA	NA	46783595	46784452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_46783600_46784500
75942	chr9	+	977	1	Antisense	novelGene_ENSMUSG00000103967.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATTAAGACCTACATCAG	9336	False	NA	NA	False	NA	NA	NA	88562567	88563544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_88562600_88563500
75945	chr10	-	1010	2	Antisense	novelGene_ENSMUSG00000038280.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	39	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCTCAGCTCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	42515985	42512496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_42513429_42515907
75946	chr5	+	684	4	Antisense	novelGene_ENSMUSG00000029352.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACGGAACAGCAGGAAGCCC	NA	False	NA	NA	False	NA	NA	NA	113223706	113227802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_113223936_113225398_113225543_113226247_113226379_113227622
75947	chr5	+	499	3	NNC	ENSMUSG00000029267.18	novel	3068	16	NA	NA	-4930	-158	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	2	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATACTGAATGCATATATT	NA	False	NA	NA	False	NA	NA	NA	108208609	108217293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108215325_108215439_108217027
75950	chr11	-	593	3	FSM	ENSMUSG00000020434.5	ENSMUST00000020712.5	2590	3	10	1987	10	-1987	multi-exon	FALSE	canonical	0	0	junction_1	0.5	5	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCCCCAGAGCAGTTGGT	NA	False	NA	NA	False	NA	NA	NA	3845088	3838074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3838310_3840038_3840148_3844839
75951	chr19	-	1128	6	FSM	ENSMUSG00000024907.8	ENSMUST00000237521.2	788	6	-335	-5	-335	5	multi-exon	FALSE	canonical	1	1	junction_2	1.72046505340853	10	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTGGTTCTTCTATGCT	NA	False	NA	NA	False	NA	NA	NA	3464879	3459909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_3460166_3461128_3461207_3461557_3461648_3463294_3463350_3464031_3464113_3464311
75952	chr10	-	209	1	Intergenic	novelGene_3413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAACTCTGTGTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	23943639	23943430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_23943400_23943600
75953	chr7	+	1035	1	Intergenic	novelGene_3000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCAGCTCTTCACAGGCC	NA	False	NA	NA	False	NA	NA	NA	96344722	96345757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_96344700_96345800
75954	chr5	+	1662	9	ISM	ENSMUSG00000029155.17	ENSMUST00000071077.14	1978	13	-36	6932	-36	-2841	5prime_fragment	FALSE	canonical	0	0	junction_4	1	4	42	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAGCCTTGGGTAGAGA	NA	False	NA	NA	False	NA	NA	NA	73808685	73829923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_73809016_73814837_73814944_73815085_73815202_73816570_73816678_73824194_73824291_73825864_73826072_73826781_73827077_73828454_73828617_73829680
75955	chr10	+	888	3	Genic_Genomic	ENSMUSG00000112593.2	novel	1056	2	NA	NA	3516	-481	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGCACCGCCACCCGAA	NA	False	NA	NA	False	NA	NA	NA	95157624	95159739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_95157803_95158446_95158748_95159330
75957	chr3	-	1220	6	ISM	ENSMUSG00000004591.17	ENSMUST00000172521.8	2510	16	28377	16529	2122	-9	internal_fragment	FALSE	canonical	3	467	junction_2	31.327942798722	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGAAAGAATGAAACCCT	NA	False	NA	-69	True	NA	NA	NA	142559374	142527078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_142527466_142534641_142534856_142534944_142535091_142536257_142536376_142544968_142545124_142559174
75958	chr11	-	856	1	Genic_Genomic	ENSMUSG00000087330.2	novel	NA	NA	NA	NA	1145	529	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTGCCTTAGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	102266701	102265845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_102265800_102266700
75960	chr13	+	1546	1	Intergenic	novelGene_1522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGTACGTGACAGAGTG	NA	False	NA	NA	False	NA	NA	NA	99476621	99478167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_99476600_99478200
75961	chr11	+	1137	3	ISM	ENSMUSG00000078607.7	ENSMUST00000140447.4	1677	5	2484	13	-58	-13	3prime_fragment	FALSE	canonical	1	3	junction_1	0	8	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGCTGTGAAATCAGAAAGC	NA	False	NA	NA	False	NA	NA	NA	106918990	106921251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_106919095_106919191_106919384_106920410
75962	chr4	+	333	1	Intergenic	novelGene_1966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCGTGAGTTTTCCCCT	NA	False	NA	NA	False	NA	NA	NA	130351263	130351596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_130351300_130351600
75963	chr5	+	741	3	FSM	ENSMUSG00000029592.12	ENSMUST00000162506.2	588	3	-16	-137	-16	137	multi-exon	FALSE	canonical	1	2	junction_1	0	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATATAAGTTTCCCTAGT	NA	False	NA	NA	False	NA	NA	NA	114203505	114227664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_114203830_114224730_114224981_114227497
75964	chr13	+	805	1	Intergenic	novelGene_1314	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAAAAGACACTCCTCCT	NA	False	NA	NA	False	NA	NA	NA	12190943	12191748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_12190900_12191700
75966	chr10	-	687	1	Genic_Genomic	ENSMUSG00000112375.2	novel	NA	NA	NA	NA	13069	480	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTAAATAAATTAAAA	8849	False	NA	NA	False	NA	NA	NA	82681773	82681086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_82681100_82681800
75967	chr6	+	642	3	Intergenic	novelGene_4230	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_2	1	27	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGCCTTTACATTTTCT	NA	False	NA	NA	False	NA	NA	NA	117856932	117861554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_117857120_117860941_117861273_117861430
75968	chr11	-	1315	7	NIC	ENSMUSG00000020614.14	novel	2541	11	NA	NA	-2035	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_4	0.942809041582063	2	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGGCTTTCTCCAAGTC	4370	False	NA	NA	False	NA	NA	NA	109569283	109563751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_109564391_109565448_109565509_109565931_109566014_109566668_109566804_109567979_109568161_109568596_109568713_109569181
75970	chr2	+	444	2	Intergenic	novelGene_2614	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_1	0	121	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTAGTTAATAAATATGTA	NA	False	NA	NA	False	NA	NA	NA	34956901	34958723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_34957071_34958448
75971	chr5	+	1163	2	ISM	ENSMUSG00000029219.11	ENSMUST00000201304.2	1419	3	1626	0	1626	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATCGTCTGAAGGAATGA	NA	False	NA	NA	False	NA	NA	NA	73165871	73170298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_73165914_73169177
75973	chr4	+	576	1	Intergenic	novelGene_2187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAGAGTTTTAGGGTCAT	NA	False	NA	NA	False	NA	NA	NA	156409854	156410430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_156409900_156410400
75974	chr12	-	1078	3	FSM	ENSMUSG00000021120.12	ENSMUST00000217998.2	2868	3	-2	1792	-2	-1792	multi-exon	FALSE	canonical	3	104	junction_1	16.5	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATACAGTTTTCCTATC	NA	False	NA	NA	False	NA	NA	NA	79136421	79129813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_79130474_79132420_79132631_79136213
75975	chr9	-	595	3	FSM	ENSMUSG00000045519.16	ENSMUST00000143992.3	608	3	53	-40	53	40	multi-exon	FALSE	canonical	3	31	junction_1	0.5	146	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTTTTATATTGGTTT	NA	False	NA	NA	False	NA	NA	NA	20296420	20263836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_20264138_20265359_20265546_20296312
75976	chr7	+	178	2	ISM	ENSMUSG00000108668.2	ENSMUST00000206497.2	496	4	12501	2	351	-1	3prime_fragment	FALSE	canonical	1	1	junction_1	0	1	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAACTGCCTTGGTCTTG	98	False	NA	NA	False	NA	NA	NA	128076292	128077293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_128076352_128077174
75977	chr17	+	751	3	ISM	ENSMUSG00000050762.6	ENSMUST00000059482.6	1253	6	6216	-6	6216	6	3prime_fragment	FALSE	canonical	2	6	junction_1	5	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	24263333	24264934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24263506_24263832_24264003_24264525
75978	chr12	+	498	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	-28	-32	-28	32	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCATTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	110864519	110865017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110864500_110865000
75979	chr6	+	791	7	NIC	ENSMUSG00000071337.12	novel	823	8	NA	NA	2	-64	combination_of_known_junctions	FALSE	canonical	3	50	junction_6	55.5230182496913	54	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAAAATGTGTTTGTGTA	9746	False	NA	NA	False	NA	NA	NA	86381265	86400767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86400587
75980	chr12	-	626	4	ISM	ENSMUSG00000020650.16	ENSMUST00000020979.9	1949	7	168	28685	168	10029	5prime_fragment	FALSE	canonical	3	416	junction_3	4.18993502999218	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGCATCAAAAATAGCATT	NA	False	NA	NA	False	NA	NA	NA	31684430	31674044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_31674250_31676724_31676876_31680791_31680893_31684261
75981	chr5	+	663	2	NNC	ENSMUSG00000029658.18	novel	2482	23	NA	NA	28349	4	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	0	93	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGATTCTCGCTGTTCTTT	4922	False	NA	NA	False	NA	NA	NA	149533591	149535363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_149533852_149534960
75982	chr16	+	912	4	NNC	ENSMUSG00000051297.9	novel	706	3	NA	NA	-7760	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.471404520791032	15	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCAGCAATATTGGTCTA	NA	False	NA	NA	False	NA	NA	NA	92267869	92294248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_92267966_92275500_92275861_92288918_92289064_92293937
75983	chr2	-	924	1	Intergenic	novelGene_2809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCAGCCTGTGCCTCAG	NA	False	NA	NA	False	NA	NA	NA	170362289	170361365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_170361400_170362300
75984	chr19	-	1264	2	Antisense	novelGene_ENSMUSG00000060675.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	5	19	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTAACTGAGATCAATGCT	NA	False	NA	NA	False	NA	NA	NA	7553676	7550538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_7551691_7553564
75986	chr8	+	490	4	NNC	ENSMUSG00000100605.2	novel	418	4	NA	NA	-56	-11	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	9.41629792788369	113	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCTTCCCATTCACTTA	NA	False	NA	NA	False	NA	NA	NA	34683956	34693288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_34684111_34687993_34688119_34691015_34691123_34693184
75989	chr7	-	517	1	Intergenic	novelGene_3033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAATAAGTGGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	126086391	126085874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_126085900_126086400
75990	chr10	-	1576	1	Intergenic	novelGene_3560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAAGCCTGACTGGCAT	NA	False	NA	NA	False	NA	NA	NA	122970753	122969177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_122969200_122970800
75991	chr15	-	942	1	Intergenic	novelGene_3353	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTGGTGCCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	96917120	96916178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_96916200_96917100
75992	chr8	-	1225	6	Antisense	novelGene_ENSMUSG00000031710.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCGCCCTGACCTGGGAG	9754	False	NA	NA	False	NA	NA	NA	84024668	84016977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_84017335_84018027_84018230_84020516_84020722_84020815_84020907_84021791_84021978_84024484
75993	chr4	+	772	4	Fusion	ENSMUSG00000085147.2_ENSMUSG00000086035.2	novel	610	4	NA	NA	-57173	-10756	multi-exon	FALSE	canonical	0	0	junction_2	1.88561808316413	3	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGATTAAAGGCAAGTGAC	NA	False	NA	NA	False	NA	NA	NA	89213020	89340968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_89213435_89214789_89214948_89288010_89288110_89340867
75996	chr18	-	525	2	FSM	ENSMUSG00000024240.14	ENSMUST00000050542.6	565	2	36	4	36	-4	multi-exon	FALSE	canonical	3	18	junction_1	0	41	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTGGGTTATTTAACCT	18	True	NA	NA	False	NA	NA	NA	6490820	6489163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_6489331_6490462
75997	chr5	-	1049	3	Genic_Genomic	ENSMUSG00000104701.2	novel	1039	1	NA	NA	-5875	-25	multi-exon	FALSE	canonical	1	1	junction_2	1	8	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAAACACATTTTGAAA	9844	False	NA	NA	False	NA	NA	NA	43971960	43965071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_43965699_43967113_43967196_43971620
75998	chr2	+	525	1	FSM	ENSMUSG00000099632.2	ENSMUST00000190930.2	567	1	22	20	22	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	54	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCAAGAAGGTATTAAGCAA	NA	False	NA	NA	False	NA	NA	NA	163261736	163262261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_163261700_163262300
75999	chr6	-	664	1	Intergenic	novelGene_4158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATGTCAAACACCTCAA	NA	False	NA	NA	False	NA	NA	NA	47430309	47429645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_47429600_47430300
76000	chr9	+	716	1	ISM	ENSMUSG00000034910.6	ENSMUST00000038489.6	7916	3	21639	4182	21639	-4182	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATATATAGTGC	NA	False	NA	NA	False	NA	NA	NA	72854565	72855281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_72854600_72855300
76001	chr3	-	488	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	5	166	-4	-11	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	4569	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATTTTAAGTCCATTAG	NA	False	NA	NA	False	NA	NA	NA	34135465	34131593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
76002	chr11	+	818	6	ISM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	67	388443	-7	-621	5prime_fragment	FALSE	canonical	3	43	junction_4	6.34350061086148	77	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTCAGTGAATATCTAT	NA	False	NA	NA	False	NA	NA	NA	108316084	108362998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842
76004	chr19	-	877	1	FSM	ENSMUSG00000095098.3	ENSMUST00000179549.3	4715	1	374	3464	-16	-3459	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTCTTGCTGGCAGAGC	5315	False	NA	NA	False	NA	NA	NA	5507548	5506671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5506700_5507500
76005	chr10	-	222	4	NNC	ENSMUSG00000090841.3	novel	692	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1231.68529530342	146	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8267	False	NA	NA	False	NA	NA	NA	128329701	128326731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128326839_128328551_128328615_128329407_128329436_128329677
76006	chr17	-	553	4	NNC	ENSMUSG00000040888.11	novel	1162	4	NA	NA	3	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	273.584843634779	6	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTTTCTGTAGTTGAT	NA	False	NA	NA	False	NA	NA	NA	24915061	24913169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24913417_24914227_24914425_24914804_24914859_24915006
76008	chr16	+	175	1	Intergenic	novelGene_3631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCCAGATAGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	29800772	29800947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_29800800_29800900
76010	chr12	-	1142	3	FSM	ENSMUSG00000021263.12	ENSMUST00000021691.6	1287	3	-10	155	-10	-155	multi-exon	FALSE	canonical	0	0	junction_1	1	5	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGTTGTGCCCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	108668580	108656635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_108656870_108658152_108658896_108668415
76011	chrX	-	426	5	Antisense	novelGene_ENSMUSG00000000355.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCAAATGATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37702154	37690805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_37690940_37691476_37691559_37694852_37694950_37700642_37700698_37702096
76012	chr3	-	189	1	Intergenic	novelGene_3140	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	91	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTTTCTTCAAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	82649609	82649420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_82649400_82649600
76016	chr5	+	1081	1	FSM	ENSMUSG00000086368.3	ENSMUST00000201195.2	1155	1	194	-120	123	87	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1174	False	NA	NA	False	NA	NA	NA	115439388	115440469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115439400_115440500
76019	chr5	-	679	1	Genic_Genomic	ENSMUSG00000029128.13	novel	NA	NA	NA	NA	1849	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTTGGGATTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	41782996	41782317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_41782300_41783000
76020	chr1	-	1055	1	FSM	ENSMUSG00000103783.2	ENSMUST00000195437.2	2884	1	2582	-753	2582	753	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGTTCCAAAGGCTG	2987	False	NA	NA	False	NA	NA	NA	30872930	30871875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_30871900_30872900
76021	chr5	-	568	4	FSM	ENSMUSG00000053030.12	ENSMUST00000065216.11	631	4	63	0	30	0	multi-exon	FALSE	canonical	2	3	junction_1	1.63299316185545	49	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCTCGTCTTTTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	77359255	77352953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_77353273_77354775_77354886_77357579_77357642_77359178
76023	chr1	-	537	3	FSM	ENSMUSG00000079283.3	ENSMUST00000112025.3	565	3	23	5	18	-4	multi-exon	FALSE	canonical	3	59	junction_1	0	364	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAGAAGGTCCACAAGAT	NA	False	NA	NA	False	NA	NA	NA	138784567	138779725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_138779912_138781308_138781411_138784318
76024	chr3	+	844	2	NNC	ENSMUSG00000038354.14	novel	4052	13	NA	NA	4880	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTCCTATTGTTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	96592288	96598344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96592296_96597507
76026	chr15	-	1210	1	Intergenic	novelGene_3299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCATAGGGTTATGCGAAC	5709	False	NA	NA	False	NA	NA	NA	59519872	59518662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_59518700_59519900
76028	chr7	-	698	3	NIC	ENSMUSG00000001988.10	novel	1959	11	NA	NA	14288	-51	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1	4	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAACACCATGCCCTA	8924	False	NA	NA	False	NA	NA	NA	16195325	16189697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16190230_16193110_16193206_16195254
76029	chr8	+	1286	1	NIC	ENSMUSG00000041949.7	novel	4409	18	NA	NA	-4	-21866	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAATCAAGTTCGTGACA	1156	False	NA	NA	False	NA	NA	NA	107409742	107411028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_107409700_107411000
76034	chr16	+	621	1	NIC	ENSMUSG00000053414.9	novel	5393	11	NA	NA	2269	-17238	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGATTGGGTTTTGACTC	NA	False	NA	NA	False	NA	NA	NA	90261053	90261674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_90261100_90261700
76039	chr8	+	395	2	ISM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	13749	109	13504	-99	3prime_fragment	FALSE	canonical	3	1984	junction_1	0	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATTCTCCCAACCCACA	NA	False	NA	NA	False	NA	NA	NA	85612570	85613976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85612753_85613763
76041	chr2	-	1286	1	ISM	ENSMUSG00000038567.6	ENSMUST00000038824.6	3560	12	12865	287	12865	-287	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACTGCCAAATAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	170326200	170324914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_170324900_170326200
76042	chrX	+	668	6	NNC	ENSMUSG00000035299.17	novel	2815	7	NA	NA	2461	-756	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACGGTCACTCAGGGTC	NA	False	NA	NA	False	NA	NA	NA	168764907	168772811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_168765034_168766953_168767080_168767994_168768139_168768931_168768969_168769117_168769233_168772691
76044	chr7	-	510	1	Intergenic	novelGene_3054	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTTAATGGGATTTAAA	2673	False	NA	NA	False	NA	NA	NA	140879629	140879119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_140879100_140879600
76045	chr12	+	1390	1	Intergenic	novelGene_4349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTAATTTTATCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	41235319	41236709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_41235300_41236700
76048	chr13	-	459	1	FSM	ENSMUSG00000069310.5	ENSMUST00000091752.5	630	1	100	71	100	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	573	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGATGTCATGTAAAGTTG	4732	False	NA	NA	False	NA	NA	NA	23929485	23929026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23929000_23929500
76049	chr16	-	523	1	NIC	ENSMUSG00000002846.10	novel	1573	7	NA	NA	0	-5459	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTCATTCGATTATTGTC	NA	False	NA	NA	False	NA	NA	NA	38343003	38342480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_38342500_38343000
76051	chr7	+	720	1	FSM	ENSMUSG00000108461.2	ENSMUST00000206201.2	750	1	25	5	25	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	11	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGAGGCTGGATGAAGT	NA	False	NA	NA	False	NA	NA	NA	116042834	116043554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_116042800_116043600
76052	ERCC-00170	+	440	1	FSM	ERCC-00170A	DQ516773	1007	1	567	0	567	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	567	1007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00170_+_600_1000
76053	chr9	+	1138	1	Intergenic	novelGene_1155	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAAGTTTTATTAAAGAC	NA	False	NA	NA	False	NA	NA	NA	106069016	106070154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_106069000_106070200
76054	chr11	+	994	1	Genic_Genomic	ENSMUSG00000018372.14	novel	NA	NA	NA	NA	-54	-1077	mono-exon	FALSE	NA	NA	NA	NA	NA	44	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAAACTAACAAATGCAT	5042	False	NA	NA	False	NA	NA	NA	106680023	106681017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_106680000_106681000
76055	chr14	+	907	2	ISM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	183735	41403	183734	29826	internal_fragment	FALSE	canonical	3	128	junction_1	0	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGGATCACTTGTTAACA	NA	False	NA	NA	False	NA	NA	NA	13987267	13997178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_13987357_13996360
76056	chr8	+	713	3	Antisense	novelGene_ENSMUSG00000034799.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGCTTCAGCACCGGGGG	NA	False	NA	NA	False	NA	NA	NA	72116404	72124364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_72116923_72118622_72118723_72124269
76057	chr12	-	410	3	NNC	ENSMUSG00000113031.2	novel	636	3	NA	NA	76	226	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10	132	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACGTCAGGCAGTCC	NA	False	NA	NA	False	NA	NA	NA	74363860	74360748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_74360907_74362065_74362187_74363729
76058	chr7	-	488	4	ISM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	1450	9	-179	1	3prime_fragment	FALSE	canonical	3	496	junction_2	24.9577420631132	85	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTAATTTTGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	127306655	127304158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604
76059	chr5	-	621	2	FSM	ENSMUSG00000108207.3	ENSMUST00000204570.2	690	2	70	-1	46	1	multi-exon	FALSE	canonical	3	15	junction_1	0	67	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTGTCTGTATCATA	NA	False	NA	NA	False	NA	NA	NA	148896444	148895406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148895541_148895957
76060	SIRV10002	+	1041	1	FSM	SIRV10002A	SIRV10002	10001	1	8959	1	8959	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	8959	10000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV10002_+_9000_10000
76061	chr5	-	263	1	Intergenic	novelGene_724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	201	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGTAATTTTTAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	67591832	67591569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_67591600_67591800
76062	chr5	-	557	3	Intergenic	novelGene_800	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	2.5	4	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTCACCCCGGGACAC	NA	False	NA	NA	False	NA	NA	NA	109699743	109698142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_109698445_109699397_109699436_109699526
76063	chr16	+	785	1	Genic_Genomic	ENSMUSG00000022507.7	novel	NA	NA	NA	NA	12239	213	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACATTATCAGAAATTTT	NA	False	NA	NA	False	NA	NA	NA	8661423	8662208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_8661400_8662200
76064	chr17	+	397	2	Intergenic	novelGene_316	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	32	junction_1	0	234	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTGTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	88373913	88382161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_88373996_88381846
76067	chr19	+	575	1	Intergenic	novelGene_1245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTGAAATGTGTCAACTC	NA	False	NA	NA	False	NA	NA	NA	30163277	30163852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_30163300_30163900
76068	chr7	+	751	2	Intergenic	novelGene_3002	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTCTTCTCTGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	97296132	97296963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_97296286_97296365
76069	chr13	+	373	2	ISM	ENSMUSG00000021500.18	ENSMUST00000223736.2	5612	24	42490	2154	7777	-2154	3prime_fragment	FALSE	canonical	3	370	junction_1	0	9	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCAGGCACTAAGGGCCAC	NA	False	NA	NA	False	NA	NA	NA	55825353	55826915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55825408_55826596
76070	chrX	+	1141	1	Intergenic	novelGene_3962	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATAGGCAACTACAGAGT	NA	False	NA	NA	False	NA	NA	NA	78694648	78695789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_78694600_78695800
76071	chr10	+	701	1	Intergenic	novelGene_3412	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCCTAAAGCCTCATGCT	NA	False	NA	NA	False	NA	NA	NA	23663273	23663974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_23663300_23664000
76072	chr8	+	866	2	FSM	ENSMUSG00000074052.8	ENSMUST00000140928.3	3522	2	89	2567	89	-2567	multi-exon	FALSE	canonical	0	0	junction_1	0	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGGGCCTTGCACTCGG	NA	False	NA	NA	False	NA	NA	NA	122634660	122643862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_122634753_122643088
76073	chr19	-	307	3	Genic_Genomic	ENSMUSG00000093314.3	novel	76	1	NA	NA	-432	307	multi-exon	FALSE	canonical	2	2	junction_2	273	29	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAGGACCCTGTGTTCGC	NA	False	NA	NA	False	NA	NA	NA	8866570	8865755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_8865832_8866113_8866239_8866464
76074	chr7	+	1770	7	NNC	ENSMUSG00000030882.20	novel	14536	44	NA	NA	36531	-40	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	44	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCTGAGCCCTGACCAAA	NA	False	NA	NA	False	NA	NA	NA	105363761	105370966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_105363788_105364000_105364185_105364383_105364498_105364584_105364784_105369078_105369171_105369666_105370479_105370623
76075	chr9	+	631	5	FSM	ENSMUSG00000032094.9	ENSMUST00000034602.9	1617	5	31	955	31	-37	multi-exon	FALSE	canonical	1	3	junction_2	2.48746859276655	28	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGTGATCAACCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	44893114	44897682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44893239_44896267_44896487_44896901_44897034_44897354_44897399_44897570
76076	chr13	-	685	4	NNC	ENSMUSG00000015937.16	novel	600	4	NA	NA	286	-250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.528209242115	1	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTTGTAATGTGCGTTGC	NA	False	NA	NA	False	NA	NA	NA	56232048	56221684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_56221727_56221777_56222206_56230932_56231108_56232008
76077	chr8	-	877	1	NIC	ENSMUSG00000053226.8	novel	1369	2	NA	NA	184	-15944	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTAATATTTAGGCTTA	583	False	NA	NA	False	NA	NA	NA	85558854	85557977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85558000_85558900
76079	chr10	+	1081	1	ISM	ENSMUSG00000047669.9	ENSMUST00000063138.8	2140	2	8883	0	885	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAAGCTTCTCTATTC	NA	False	NA	NA	False	NA	NA	NA	55991895	55992976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_55991900_55993000
76082	chr7	+	447	2	Intergenic	novelGene_3003	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	11	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTATTTTTTCATATT	585	False	NA	NA	False	NA	NA	NA	97831577	97832137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_97831686_97831798
76083	chr2	-	573	1	FSM	ENSMUSG00000103009.2	ENSMUST00000192413.2	1943	1	1323	47	1323	-47	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAAAAGGTTGTTAGTGT	NA	False	NA	NA	False	NA	NA	NA	129039791	129039218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_129039200_129039800
76087	chr5	-	760	2	NNC	ENSMUSG00000097626.6	novel	756	3	NA	NA	-828	23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATGAATGCTATTTCAAAA	NA	False	NA	NA	False	NA	NA	NA	19432381	19408267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_19408924_19432277
76088	chrX	-	619	1	NIC	ENSMUSG00000090110.9	novel	992	3	NA	NA	451	-10426	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAGTTCCAACCTAAGT	NA	False	NA	NA	False	NA	NA	NA	74459720	74459101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_74459100_74459700
76089	chr1	-	323	1	Antisense	novelGene_ENSMUSG00000103403.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAAACAATTTACAAAG	NA	False	NA	NA	False	NA	NA	NA	74347263	74346940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_74346900_74347300
76090	chr13	+	786	2	Genic_Genomic	ENSMUSG00000100475.2	novel	967	1	NA	NA	-612	-94	multi-exon	FALSE	canonical	2	3	junction_1	0	15	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTAAAACATCTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	96269264	96270749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_96269288_96269986
76092	chr10	+	905	1	ISM	ENSMUSG00000044617.9	ENSMUST00000054287.9	5960	2	6894	13	6894	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	17	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	127582300	127583205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127582300_127583200
76094	chr2	-	667	5	FSM	ENSMUSG00000026809.16	ENSMUST00000102877.8	671	5	-2	6	-2	-2	multi-exon	FALSE	canonical	3	6	junction_1	1.22474487139159	50	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTGCCTGGCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	28589665	28582097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28582165_28582923_28583072_28583635_28583839_28585918_28586096_28589593
76095	chr8	+	311	2	Intergenic	novelGene_1779	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCGGAAGTGCTGCAGAG	NA	False	NA	NA	False	NA	NA	NA	123291689	123292162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_123291785_123291946
76096	chr8	+	410	3	FSM	ENSMUSG00000002396.9	ENSMUST00000110051.2	2179	3	536	1233	488	194	multi-exon	FALSE	canonical	3	32	junction_1	15.5	114	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACCTACTGTGTGCAGC	NA	False	NA	NA	False	NA	NA	NA	71824477	71825793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71824630_71825392_71825447_71825589
76097	chr9	-	581	1	Intergenic	novelGene_1135	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCTTCCAGAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	96953350	96952769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_96952800_96953400
76098	chr12	+	424	6	ISM	ENSMUSG00000052221.9	ENSMUST00000218732.2	2738	10	76	10559	71	-3300	5prime_fragment	FALSE	canonical	1	1	junction_4	1.4142135623731	1	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCGCGTGGTGTGAGTAA	NA	False	NA	NA	False	NA	NA	NA	76464470	76475695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_76464491_76465701_76465767_76473522_76473610_76474658_76474757_76474853_76474921_76475608
76099	chr7	-	1204	1	Intergenic	novelGene_2914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGATTTCTTTTCTTTCA	3312	False	NA	NA	False	NA	NA	NA	29515281	29514077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_29514100_29515300
76100	chr1	+	469	1	ISM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	16489	1016	16303	-1013	mono-exon	FALSE	NA	NA	NA	NA	NA	11	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGCTTGGCATTCAAAGAG	NA	False	NA	NA	False	NA	NA	NA	134359604	134360073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134359600_134360100
76101	chr11	+	687	3	Antisense	novelGene_ENSMUSG00000020462.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGCAGCAGCCCGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	29193822	29197298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_29194159_29195083_29195151_29197014
76102	chr7	-	713	4	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	-139	22353	-139	-21661	5prime_fragment	FALSE	canonical	3	13	junction_3	4.10960933531265	21	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTTCCCAGGCACCTACA	NA	False	NA	NA	False	NA	NA	NA	44702444	44699339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44699553_44699628_44699791_44700641_44700755_44702219
76104	chr4	-	695	3	Antisense	novelGene_ENSMUSG00000083238.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	138892711	138877744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_138878054_138881255_138881401_138892470
76105	chr13	+	484	1	Antisense	novelGene_ENSMUSG00000021510.12_AS_novelGene_ENSMUSG00000114923.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGAAGTTGGAAAGAACT	5739	False	NA	NA	False	NA	NA	NA	67785529	67786013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_67785500_67786000
76107	chr18	+	760	1	NIC	ENSMUSG00000042942.19	novel	8420	33	NA	NA	-20990	-4734	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGTGACAGGAAATCCGG	NA	False	NA	NA	False	NA	NA	NA	10532795	10533555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_10532800_10533600
76108	chr13	+	518	4	NNC	ENSMUSG00000109561.2	novel	5146	20	NA	NA	-122	-47045	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6.18241233033047	3	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGAGTATAATGACTTGT	NA	False	NA	NA	False	NA	NA	NA	96884917	96910884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_96885144_96888491_96888566_96889478_96889589_96910776
76111	chr17	-	471	3	NNC	ENSMUSG00000117361.2	novel	423	2	NA	NA	-674	-96	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0.5	18	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTTTAGAGATTCTGG	NA	False	NA	NA	False	NA	NA	NA	87838846	87837026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_87837291_87838534_87838682_87838786
76112	chr4	-	777	2	ISM	ENSMUSG00000029001.16	ENSMUST00000129253.8	1633	7	5884	118	4389	-118	3prime_fragment	FALSE	canonical	1	1	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGCTTGAAGATGCCC	NA	False	NA	NA	False	NA	NA	NA	148238667	148237377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_148238102_148238614
76114	chrX	-	929	1	FSM	ENSMUSG00000065422.3	ENSMUST00000083488.3	95	1	82	-916	82	916	mono-exon	FALSE	NA	NA	NA	NA	NA	17	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGATTGTACTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	19012545	19011616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_19011600_19012500
76116	chr16	-	962	2	Intergenic	novelGene_3857	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	9	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATACATGAGAAAGGTCA	NA	False	NA	NA	False	NA	NA	NA	91145748	91130935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_91131558_91145408
76117	chr11	-	660	3	FSM	ENSMUSG00000087165.8	ENSMUST00000140069.2	502	3	-47	-111	-28	4	multi-exon	FALSE	canonical	3	13	junction_2	6.5	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTCAGTGATTAGCA	NA	False	NA	NA	False	NA	NA	NA	57692271	57686320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_57686621_57686851_57687000_57692059
76118	chr1	-	158	1	ISM	ENSMUSG00000085184.10	ENSMUST00000132370.9	599	3	12352	27	12352	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATATTTTAA	NA	False	NA	NA	False	NA	NA	NA	172365884	172365726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_172365700_172365900
76121	chr2	+	1343	9	Intergenic	novelGene_2673	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCTTCGGAAGTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	102644345	102731803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_102644681_102652550_102652634_102654608_102654683_102658889_102658956_102683360_102683582_102686243_102686315_102691906_102692039_102695622_102695794_102731613
76122	chr9	-	694	1	NIC	ENSMUSG00000056919.10	novel	7685	27	NA	NA	6884	-21990	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACATTAAAGCTGACCAA	NA	False	NA	NA	False	NA	NA	NA	87130457	87129763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_87129800_87130500
76123	chr9	+	373	1	Intergenic	novelGene_1083	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGACCGTGGTGCCCCGCG	NA	False	NA	NA	False	NA	NA	NA	58944011	58944384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58944000_58944400
76124	chr2	+	1076	1	Intergenic	novelGene_2624	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAGACCCAGTCTTATAT	NA	False	NA	NA	False	NA	NA	NA	48845300	48846376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_48845300_48846400
76125	chr2	+	420	3	FSM	ENSMUSG00000063714.16	ENSMUST00000123087.8	583	3	74	89	-18	-19	multi-exon	FALSE	canonical	1	97	junction_1	49.5	625	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAATGGAATGGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	72809841	72818932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_72809940_72817871_72817977_72818715
76127	chr15	+	1369	1	Intergenic	novelGene_3348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTATTCTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	92263433	92264802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_92263400_92264800
76128	chr12	+	472	1	FSM	ENSMUSG00000113361.2	ENSMUST00000221143.2	2189	1	1283	434	1283	-434	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCTGTCTGTCTATAAAA	NA	False	NA	NA	False	NA	NA	NA	110558228	110558700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110558200_110558700
76129	chr6	+	594	1	Intergenic	novelGene_4234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATTGTTAATAAATTTT	NA	False	NA	NA	False	NA	NA	NA	118539306	118539900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_118539300_118539900
76132	chr11	-	154	1	Intergenic	novelGene_2530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTAAAAAAAAAAAAAGA	3213	False	NA	NA	False	NA	NA	NA	115642014	115641860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_115641900_115642000
76133	chrX	-	180	1	Intergenic	novelGene_4096	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTAAAAAAGAAAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	151994162	151993982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_151994000_151994200
76134	chr4	-	362	1	Intergenic	novelGene_1792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTTATAAGACAACCAGT	NA	False	NA	NA	False	NA	NA	NA	3726180	3725818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_3725800_3726200
76135	chr6	+	423	1	Intergenic	novelGene_4181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCACAGCAATAAAATCCTAA	NA	False	NA	NA	False	NA	NA	NA	67197229	67197652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_67197200_67197700
76136	chr19	-	659	2	ISM	ENSMUSG00000117890.2	ENSMUST00000237615.2	658	3	962	-145	962	145	3prime_fragment	FALSE	canonical	0	0	junction_1	0	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGGAGTGGGACCTGGA	NA	False	NA	NA	False	NA	NA	NA	56652081	56644797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_56645390_56652014
76138	chr9	+	1392	1	Intergenic	novelGene_988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACATTTTTCTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	7219486	7220878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_7219500_7220900
76143	chr4	+	594	3	Intergenic	novelGene_1978	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_2	4	30	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTATTTCTAGAATTTA	NA	False	NA	NA	False	NA	NA	NA	133238393	133239708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_133238502_133238583_133238667_133239305
76144	chr18	-	1015	1	Antisense	novelGene_ENSMUSG00000024483.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTTTTGCCTATATAT	4775	False	NA	NA	False	NA	NA	NA	36739760	36738745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_36738700_36739800
76145	chrX	-	704	4	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-26396	7	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	23.2522400354604	349	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTTGATTTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	61597013	61554137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_61554605_61558040_61558144_61591628_61591699_61596949
76146	chr8	-	368	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212289.2	338	3	-20	-10	-7	10	multi-exon	FALSE	canonical	0	0	junction_1	187	1496	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGTATGAGAGGTTACG	NA	False	NA	NA	False	NA	NA	NA	96544326	96535169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_96535388_96539051_96539129_96544253
76147	chr2	+	798	4	Antisense	novelGene_ENSMUSG00000015647.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTGACAACTCCCTCAC	NA	False	NA	111	True	NA	NA	NA	179818188	179819284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_179818558_179818680_179818803_179818897_179818985_179819064
76149	chr10	-	1012	3	FSM	ENSMUSG00000019832.6	ENSMUST00000019974.5	2149	3	109	1028	25	165	multi-exon	FALSE	canonical	1	1	junction_1	0.5	1	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTAGCTTTTAGTGTG	NA	False	NA	NA	False	NA	NA	NA	10433900	10421773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_10422196_10426422_10426701_10433588
76150	chr11	+	328	4	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGGCAGATATCTTCAT	6771	False	NA	NA	False	NA	NA	NA	69807555	69808787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69807594_69808050_69808206_69808467_69808564_69808748
76151	chr5	-	1644	2	Intergenic	novelGene_729	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAACTCTGAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	75729908	75728156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_75728218_75728325
76152	chr12	+	404	4	Antisense	novelGene_ENSMUSG00000056458.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTATTCCTGTCGCCTTA	NA	False	NA	NA	False	NA	NA	NA	110792874	110807342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110792947_110794474_110794612_110800561_110800673_110807258
76153	chr2	+	489	3	Intergenic	novelGene_2663	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	2	39	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTTCCCTCCACGACCT	NA	False	NA	NA	False	NA	NA	NA	77174317	77186349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_77174403_77184667_77184824_77186101
76154	chr9	+	836	1	Intergenic	novelGene_1148	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCCCTGCCTATGGAGAG	NA	False	NA	NA	False	NA	NA	NA	100369590	100370426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_100369600_100370400
76156	chr15	-	360	2	ISM	ENSMUSG00000063765.13	ENSMUST00000173898.2	1095	3	1952	10	1773	-10	3prime_fragment	FALSE	canonical	3	37	junction_1	0	5	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAACAAAAACAAAA	9921	False	NA	NA	False	NA	NA	NA	81576456	81570391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_81570604_81576308
76157	chrX	-	478	5	FSM	ENSMUSG00000060726.11	ENSMUST00000113154.8	544	5	53	13	53	-13	multi-exon	FALSE	canonical	3	7	junction_4	4.9180788932265	91	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCAGTCTTGGTTTTGGG	NA	False	NA	NA	False	NA	NA	NA	134625957	134619428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_134619503_134620414_134620520_134621315_134621402_134624106_134624186_134625823
76159	chr5	+	593	1	ISM	ENSMUSG00000029635.16	ENSMUST00000162494.8	2973	12	70996	56	5861	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGAACATTGTTAAAAACA	7476	False	NA	NA	False	NA	NA	NA	146239035	146239628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_146239000_146239600
76162	chr7	+	1495	6	NNC	ENSMUSG00000013091.6	novel	589	5	NA	NA	-6838	609	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	29	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGTGCCCCTGTGTGTG	8060	False	NA	NA	False	NA	NA	NA	4779097	4787949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4779219_4779334_4779615_4786155_4786192_4786716_4786843_4786932_4787018_4787102
76164	chr17	-	439	1	Genic_Genomic	ENSMUSG00000040694.5	novel	NA	NA	NA	NA	737	60	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGATTCTTAATGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	48738909	48738470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_48738500_48738900
76166	chr11	+	596	1	Antisense	novelGene_ENSMUSG00000025130.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTTTCCATTACGTAC	5870	False	NA	NA	False	NA	NA	NA	120463990	120464586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120464000_120464600
76167	chr3	-	828	1	Intergenic	novelGene_3141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAACTACAGCGCTCAG	NA	False	NA	NA	False	NA	NA	NA	84721474	84720646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_84720600_84721500
76169	chr12	-	432	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	-1	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	143.25501736414	213	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	994	False	NA	NA	False	NA	NA	NA	81531888	81518866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
76174	chr6	+	539	3	FSM	ENSMUSG00000029815.13	ENSMUST00000114500.3	2587	3	-1	2049	-1	24	multi-exon	FALSE	canonical	3	89	junction_1	380.5	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCTTCCCTTTGATATG	347	False	NA	NA	False	NA	NA	NA	49050780	49061636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_49051038_49059778_49059861_49061436
76175	chr8	-	1075	1	Intergenic	novelGene_1623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCTGACTAAACATAATACA	NA	False	NA	NA	False	NA	NA	NA	41813059	41811984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_41812000_41813100
76177	chrX	+	479	1	Intergenic	novelGene_4056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTCAAATAAACTGATTT	NA	False	NA	NA	False	NA	NA	NA	134675390	134675869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_134675400_134675900
76178	chr10	-	929	1	ISM	ENSMUSG00000050473.6	ENSMUST00000059805.6	2630	2	2584	31	2584	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAAGTGTGAGTCT	NA	False	NA	NA	False	NA	NA	NA	19724621	19723692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_19723700_19724600
76179	chr1	-	473	3	Antisense	novelGene_ENSMUSG00000026443.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTAACCTGTTCTGTCGG	NA	False	NA	NA	False	NA	NA	NA	132843673	132842697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_132842981_132843305_132843376_132843553
76180	chr16	-	330	1	FSM	ENSMUSG00000052192.6	ENSMUST00000143451.2	236	1	-43	-51	-43	51	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGGGGGGGGGGAATCAC	NA	False	NA	NA	False	NA	NA	NA	35393969	35393639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_35393600_35394000
76181	chr4	-	835	3	Antisense	novelGene_ENSMUSG00000078532.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	6	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTACTGTGTGTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	130339424	130336495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_130337093_130339078_130339205_130339312
76182	chr9	-	713	3	Intergenic	novelGene_1145	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1	2	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGAGTGCAGCTCATCT	NA	False	NA	NA	False	NA	NA	NA	98724241	98720876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_98720937_98723451_98723530_98723666
76184	chr7	+	862	1	NIC	ENSMUSG00000053714.9	novel	2430	6	NA	NA	-740	9799	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTCTTCGATCCTTCTTT	5627	False	NA	NA	False	NA	NA	NA	25094098	25094960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_25094100_25095000
76185	chr9	-	169	1	Intergenic	novelGene_1143	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAGAACTCTCAG	NA	False	NA	NA	False	NA	NA	NA	98613050	98612881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_98612900_98613000
76186	chr2	-	572	1	ISM	ENSMUSG00000026836.16	ENSMUST00000112599.8	2891	10	69263	4	69263	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGATTTTCCTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	58337021	58336449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_58336400_58337000
76187	chr9	-	1062	4	FSM	ENSMUSG00000041012.5	ENSMUST00000047013.4	1064	4	1	1	1	-1	multi-exon	FALSE	canonical	2	4	junction_3	0.816496580927726	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAACGTGTGGAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	114673219	114618413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114618814_114619705_114619823_114625108_114625283_114672848
76189	chr1	+	284	1	Intergenic	novelGene_500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAAAATGTGTGGTCATT	3782	False	NA	NA	False	NA	NA	NA	190915651	190915935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_190915700_190915900
76192	ERCC-00144	+	521	1	FSM	ERCC-00144A	DQ854995	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00144_+_0_500
76193	chr2	+	819	1	Intergenic	novelGene_2592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCCGGTCCCCACTTT	2819	False	NA	NA	False	NA	NA	NA	29632578	29633397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_29632600_29633400
76195	chr15	+	497	1	Genic_Intron	novelGene_3320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTGAACAATTTTTTTT	985	False	NA	NA	False	NA	NA	NA	78968483	78968980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Intron_chr15_+_78968500_78969000
76196	chr9	-	751	1	FSM	ENSMUSG00000049073.8	ENSMUST00000060345.6	1116	1	994	-629	994	13	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGATTTCAAATATGTAT	NA	False	NA	NA	False	NA	NA	NA	40038341	40037590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_40037600_40038300
76197	chr4	+	756	4	Antisense	novelGene_ENSMUSG00000028619.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTCTTCCGGGGCCCAG	NA	False	NA	NA	False	NA	NA	NA	107022502	107035515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_107022887_107033670_107033824_107034763_107034902_107035434
76198	chr17	-	273	1	Intergenic	novelGene_13	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTATGGTTTTTCCTAC	NA	False	NA	NA	False	NA	NA	NA	12578318	12578045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_12578000_12578300
76200	chr4	-	477	1	Genic_Genomic	ENSMUSG00000028964.15	novel	NA	NA	NA	NA	-44	-3969	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTCCCAAGCGCTGAG	NA	False	NA	NA	False	NA	NA	NA	150994152	150993675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_150993700_150994200
76201	chr2	-	617	1	Intergenic	novelGene_2720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAAATTCAGCGAGTGT	NA	False	NA	NA	False	NA	NA	NA	144398058	144397441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_144397400_144398100
76204	chr4	-	281	2	ISM	ENSMUSG00000028329.14	ENSMUST00000141318.2	577	4	2457	21	2424	-21	3prime_fragment	FALSE	canonical	3	81	junction_1	0	4	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGACCCTGTTCAAAGTT	1090	False	NA	NA	False	NA	NA	NA	46183225	46175242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_46175416_46183117
76205	chr2	+	887	4	FSM	ENSMUSG00000027015.5	ENSMUST00000028403.3	5339	4	349	4103	349	-4103	multi-exon	FALSE	canonical	1	2	junction_2	0.471404520791032	3	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAACGGACATGATCAACA	NA	False	NA	NA	False	NA	NA	NA	70948615	70969167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_70948657_70959996_70960206_70967832_70967988_70968685
76206	chr16	-	779	1	Intergenic	novelGene_3876	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCAAGTTCAAGAGGAAAC	NA	False	NA	NA	False	NA	NA	NA	96156229	96155450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_96155400_96156200
76207	chr5	+	612	1	Intergenic	novelGene_677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGACGCGCGCCTCACG	NA	False	NA	NA	False	NA	NA	NA	29400184	29400796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_29400200_29400800
76208	chr7	+	588	1	Intergenic	novelGene_2988	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATACTTTCATTTGGAT	NA	False	NA	NA	False	NA	NA	NA	80974039	80974627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_80974000_80974600
76209	chr13	-	658	4	FSM	ENSMUSG00000035834.12	ENSMUST00000161093.8	424	4	-46	-188	0	188	multi-exon	FALSE	canonical	3	10	junction_1	130.922368855237	45	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACTAATACTCATTTTTA	NA	False	NA	NA	False	NA	NA	NA	81859121	81841776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_81842010_81842766_81842897_81847862_81848013_81858976
76210	chr1	+	850	5	ISM	ENSMUSG00000005677.15	ENSMUST00000075469.12	1305	8	2388	-2	2010	0	3prime_fragment	FALSE	canonical	0	0	junction_4	1.4790199457749	10	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTCTTAGTGCACTCAT	NA	False	NA	NA	False	NA	NA	NA	171043927	171046414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_171044118_171044314_171044455_171044644_171044791_171044882_171045000_171046157
76212	chr16	+	744	1	Intergenic	novelGene_3645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTATTATAAAGAAAGCAAA	9974	False	NA	NA	False	NA	NA	NA	35595314	35596058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_35595300_35596100
76213	chr15	+	355	4	Intergenic	novelGene_3283	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_3	5.71547606649408	70	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCCTGGATCAGAAATCT	NA	False	NA	NA	False	NA	NA	NA	41212200	41215801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_41212325_41212702_41212780_41214473_41214518_41215691
76215	chr19	-	446	3	FSM	ENSMUSG00000074733.15	ENSMUST00000143264.8	4825	3	-2	4381	-2	166	multi-exon	FALSE	canonical	3	41	junction_2	7	40	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTGGCTTTGAGAAT	NA	False	NA	NA	False	NA	NA	NA	61129230	61115274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_61115506_61115875_61116003_61129142
76217	chr7	-	527	4	ISM	ENSMUSG00000064307.14	ENSMUST00000106966.8	821	5	50	466	12	-282	5prime_fragment	FALSE	canonical	2	8	junction_3	3.09120616516523	15	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGGAAGAAAAGGGGTACA	2575	False	NA	NA	False	NA	NA	NA	101583025	101562662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_101562791_101564768_101564975_101569843_101569982_101582970
76218	chr12	-	968	2	ISM	ENSMUSG00000113581.2	ENSMUST00000220793.2	380	3	641	27	322	-24	3prime_fragment	FALSE	canonical	3	10	junction_1	0	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCAATAAAGCTTTGTGCA	NA	False	NA	NA	False	NA	NA	NA	110243861	110241845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110242012_110243059
76220	chr9	+	303	1	FSM	ENSMUSG00000101037.2	ENSMUST00000187393.2	1319	1	-11	1027	-11	-1027	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGCATAGACTGGGCATG	1388	False	NA	NA	False	NA	NA	NA	95394192	95394495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_95394200_95394500
76228	chr16	-	734	1	NIC	ENSMUSG00000022639.15	novel	2264	2	NA	NA	465	-4049	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCCCTGCTCCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	50552581	50551847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_50551800_50552600
76230	chr2	+	1345	1	ISM	ENSMUSG00000035829.14	ENSMUST00000189694.2	5463	3	6213	7	6213	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	17	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCCACAGCTTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	28344165	28345510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_28344200_28345500
76231	chr11	+	615	4	FSM	ENSMUSG00000025380.3	ENSMUST00000152556.2	591	4	193	-217	22	-3	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTTGCCGTGGGCTCAAG	4507	False	NA	NA	False	NA	NA	NA	120257560	120258991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120257624_120258062_120258185_120258482_120258651_120258729
76233	chr14	-	158	1	Intergenic	novelGene_571	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAATATAATGATAAAT	1190	False	NA	NA	False	NA	NA	NA	51197753	51197595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_51197600_51197800
76236	chr14	-	712	1	Intergenic	novelGene_536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATGACCAACTGTTATT	NA	False	NA	NA	False	NA	NA	NA	30673291	30672579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_30672600_30673300
76237	chr8	-	599	1	Intergenic	novelGene_1691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTGCCTGAGGGACATGA	NA	False	NA	NA	False	NA	NA	NA	89721323	89720724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89720700_89721300
76240	chr15	-	543	2	Intergenic	novelGene_3313	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	56	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTACCTGCCTCAATGG	NA	False	NA	NA	False	NA	NA	NA	75754362	75753096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_75753523_75754245
76241	chr16	+	542	1	Intergenic	novelGene_3594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATTGACTAGCCTAAG	NA	False	NA	NA	False	NA	NA	NA	13129269	13129811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_13129300_13129800
76242	chr9	-	661	2	NNC	ENSMUSG00000032436.18	novel	993	5	NA	NA	-27	-10268	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	0	10	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACAATACCTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	114610951	114610056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114610502_114610735
76243	chr6	-	384	4	ISM	ENSMUSG00000041372.11	ENSMUST00000212457.2	2958	20	61	21285	61	-21285	5prime_fragment	FALSE	canonical	3	51	junction_1	5.79271573232759	1	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGAGTACCTGTGGGGAT	NA	False	NA	NA	False	NA	NA	NA	120271459	120202055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_120202150_120208474_120208553_120209848_120209953_120271351
76244	chr6	+	163	1	Intergenic	novelGene_4142	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGCAAACAA	NA	False	NA	NA	False	NA	NA	NA	37723045	37723208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_37723000_37723200
76245	chr4	-	611	1	ISM	ENSMUSG00000052135.9	ENSMUST00000102656.4	2615	2	19660	0	19660	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAGCCTTGGGTTAGGA	9754	False	NA	NA	False	NA	NA	NA	120124886	120124275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_120124300_120124900
76246	chr16	-	196	1	FSM	ENSMUSG00000052192.6	ENSMUST00000143451.2	236	1	91	-51	91	51	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGGGGGGGGGGAATCAC	NA	False	NA	NA	False	NA	NA	NA	35393835	35393639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_35393600_35393800
76247	chr7	+	409	1	Intergenic	novelGene_3025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGGGTTGGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116170772	116171181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_116170800_116171200
76250	chr5	+	1362	1	NIC	ENSMUSG00000039771.14	novel	900	3	NA	NA	14	-4646	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCAAGTTCTCAGGCTTT	9297	False	NA	NA	False	NA	NA	NA	136145569	136146931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_136145600_136146900
76253	chr11	-	486	2	NNC	ENSMUSG00000085035.2	novel	627	2	NA	NA	-7418	190	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	0	235	1	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTCTTGGCCTCCATTAT	9138	False	NA	NA	False	NA	NA	NA	20103762	20095376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20095695_20103594
76254	chr11	+	648	6	NNC	ENSMUSG00000034175.14	novel	2333	9	NA	NA	-29144	-1447	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	93	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGCGTTCCCCCTAGGC	7091	False	NA	NA	False	NA	NA	NA	5019781	5049060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_5020104_5020227_5020298_5041867_5041982_5043679_5043733_5043868_5043906_5049008
76255	chr10	-	1002	6	ISM	ENSMUSG00000071392.7	ENSMUST00000207827.2	2730	20	25995	36461	25995	-22415	internal_fragment	FALSE	canonical	0	0	junction_5	0.8	1	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGTGTCAAAACTCTGGA	NA	False	NA	NA	False	NA	NA	NA	18051106	18041230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_18041360_18044040_18044210_18045129_18045254_18048419_18048589_18049639_18049893_18050948
76257	chr1	+	398	1	NIC	ENSMUSG00000026020.10	novel	576	4	NA	NA	122	-5416	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTACCCTATAGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	59724334	59724732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724300_59724700
76260	chr17	+	683	1	Antisense	novelGene_ENSMUSG00000079414.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGGCCAATCTTCCTGG	459	False	NA	NA	False	NA	NA	NA	57399061	57399744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_57399100_57399700
76261	chr17	+	645	4	FSM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	1	-49	1	-4	multi-exon	FALSE	canonical	2	24	junction_1	165.748805928328	36	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGATTTCTCAGCAGCCT	NA	False	NA	NA	False	NA	NA	NA	23892601	23894197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_23892678_23892942_23893043_23893520_23893650_23893857
76262	chr7	+	1006	1	Antisense	novelGene_ENSMUSG00000048779.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCCTGCTCCATAACTGC	7047	False	NA	NA	False	NA	NA	NA	100587337	100588343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_100587300_100588300
76264	chr4	-	609	1	Intergenic	novelGene_1965	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGACACCCTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	129858912	129858303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_129858300_129858900
76265	chr11	-	343	3	NNC	ENSMUSG00000041629.8	novel	2619	3	NA	NA	250	-1888	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	663.5	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGCCTGTCGGCTTT	NA	False	NA	NA	False	NA	NA	NA	113574731	113554032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113554232_113568129_113568230_113574687
76266	chr2	-	715	2	Intergenic	novelGene_2812	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	40	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATCAGACATTTGGAAG	NA	False	NA	NA	False	NA	NA	NA	170537909	170533740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_170534114_170537567
76267	chr2	-	1048	1	Antisense	novelGene_ENSMUSG00000000827.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCAACCTCTTTATGGAG	8412	False	NA	NA	False	NA	NA	NA	181139463	181138415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_181138400_181139500
76270	chr3	-	448	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	22	18	22	2	multi-exon	FALSE	canonical	3	716	junction_2	92.5	4271	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAGGCTTGGACATACA	NA	False	NA	NA	False	NA	NA	NA	95778809	95769963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95770245_95777805_95777928_95778764
76272	chr9	-	1483	1	Intergenic	novelGene_1101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CGCTGTGTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69312610	69311127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_69311100_69312600
76273	chr7	-	468	1	ISM	ENSMUSG00000036882.8	ENSMUST00000044338.5	4280	21	11464	23	6029	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAATAAAAATGGCAGAAAT	9615	False	NA	NA	False	NA	NA	NA	30222141	30221673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30221700_30222100
76276	chr19	-	1718	2	Antisense	novelGene_ENSMUSG00000042372.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGCGCCGCTGCGGTAC	NA	False	NA	NA	False	NA	NA	NA	25601252	25587628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_25587721_25599626
76280	chr9	-	1456	1	Antisense	novelGene_ENSMUSG00000025898.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCGTCGAAAAGCAAGGAC	NA	False	NA	NA	False	NA	NA	NA	3405547	3404091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_3404100_3405500
76282	chr2	+	917	1	Intergenic	novelGene_2712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTAGAAGTGCTTAGAATA	NA	False	NA	NA	False	NA	NA	NA	131692490	131693407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_131692500_131693400
76283	chr17	+	1166	2	ISM	ENSMUSG00000024076.11	ENSMUST00000232859.2	2544	13	116553	13	50780	-3	3prime_fragment	FALSE	canonical	0	0	junction_1	0	8	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGGGCACAGTTTCTAAT	NA	False	NA	NA	False	NA	NA	NA	78932153	78934824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_78932669_78934173
76285	chr4	-	1302	1	Genic_Genomic	ENSMUSG00000008305.19	novel	NA	NA	NA	NA	3451	1160	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTCTGCCCTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	72035520	72034218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_72034200_72035500
76288	chr8	+	291	2	Genic_Genomic	ENSMUSG00000081094.5	novel	591	1	NA	NA	-24	-169	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCACAAGCTGAAGGCAG	7093	False	NA	NA	False	NA	NA	NA	19542927	19543373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_19543043_19543197
76292	chr15	-	1153	1	Intergenic	novelGene_3347	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTAAGATACAAAATCCCT	NA	False	NA	NA	False	NA	NA	NA	89241849	89240696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_89240700_89241800
76293	chr5	-	666	1	FSM	ENSMUSG00000105603.2	ENSMUST00000199828.2	1447	1	1001	-220	1001	220	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAGTACCTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	110629066	110628400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110628400_110629100
76294	chr14	+	814	1	NIC	ENSMUSG00000021996.17	novel	1988	9	NA	NA	-9	-6267	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGACATTTCAGATATAA	NA	False	NA	NA	False	NA	NA	NA	74969814	74970628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_74969800_74970600
76296	chrX	-	548	2	Intergenic	novelGene_3885	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	17	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGCTTCCCACATGAGC	NA	False	NA	NA	False	NA	NA	NA	18268625	18261786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_18262145_18268435
76297	chr10	+	430	2	FSM	ENSMUSG00000037535.6	ENSMUST00000187763.2	485	2	8	47	8	-47	multi-exon	FALSE	canonical	0	0	junction_1	0	4	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTAATAAAAAATGAAAAC	6238	False	NA	NA	False	NA	NA	NA	21295383	21301598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21295418_21301202
76298	chr4	-	619	2	FSM	ENSMUSG00000070637.3	ENSMUST00000094544.3	905	2	33	253	33	-253	multi-exon	FALSE	canonical	3	14	junction_1	0	83	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCACCGAAGAACGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	141163383	141160235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141160768_141163296
76299	chr8	+	563	2	Intergenic	novelGene_1726	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	16	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGCAGGGACCTCGCTGG	NA	False	NA	NA	False	NA	NA	NA	108323744	108325773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_108323854_108325319
76301	chr11	+	620	1	Antisense	novelGene_ENSMUSG00000054517.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCCCAGGGCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	116021586	116022206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_116021600_116022200
76303	chr10	-	460	4	NNC	ENSMUSG00000090247.8	novel	550	4	NA	NA	50	-10	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	286.803455736193	16	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCATTCTATGTGGTGTG	NA	False	NA	NA	False	NA	NA	NA	128759343	128755792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128755977_128756427_128756561_128758522_128758566_128759243
76304	chr14	-	353	3	NNC	ENSMUSG00000043681.6	novel	408	3	NA	NA	1160	-6	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_2	1240	49	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGAGTCCTGAGTTTACC	NA	False	NA	NA	False	NA	NA	NA	34076230	34073843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_34074035_34075654_34075718_34076131
76305	chr9	-	332	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	21	21	21	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	3	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7295	False	NA	NA	False	NA	NA	NA	114811786	114811454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114811500_114811800
76306	chr10	+	480	1	Intergenic	novelGene_3439	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAACATTTGATTACTTGT	1548	False	NA	NA	False	NA	NA	NA	58330255	58330735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_58330300_58330700
76309	chr19	+	1047	1	Genic_Genomic	ENSMUSG00000025025.15	novel	NA	NA	NA	NA	5098	357	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAACTTACTAACGACGAC	6304	False	NA	NA	False	NA	NA	NA	53363551	53364598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_53363600_53364600
76310	chr10	-	548	4	FSM	ENSMUSG00000034917.9	ENSMUST00000219958.2	599	4	32	19	32	-19	multi-exon	FALSE	canonical	3	41	junction_3	41.7692071587032	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAAGACCTCTGGAAGAG	7381	False	NA	NA	False	NA	NA	NA	81127017	81118629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81118875_81119329_81119440_81119516_81119574_81126881
76312	chr18	+	175	1	Intergenic	novelGene_4520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	236	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACGGTCTCTCGTGAGT	NA	False	NA	NA	False	NA	NA	NA	30319598	30319773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_30319600_30319800
76313	chr1	+	481	3	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-2209	-253	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	883.5	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGATTTTCTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	180414822	180428564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180414967_180415485_180415719_180428460
76314	chrX	-	552	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	346	10	346	-10	multi-exon	FALSE	canonical	3	2198	junction_1	70	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAAAGTATGACTGGTTA	NA	False	NA	NA	False	NA	NA	NA	20483512	20481574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_20481782_20481952_20482084_20483298
76315	chr5	+	559	3	FSM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	6	10	0	-9	multi-exon	FALSE	canonical	3	72	junction_1	23.5	762	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAATTCTATGGCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	74253743	74254988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_74253801_74254018_74254081_74254548
76316	chrX	+	1368	1	Intergenic	novelGene_4000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGGACCAGATTGGAACT	NA	False	NA	NA	False	NA	NA	NA	103602515	103603883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_103602500_103603900
76319	SIRV6	+	132	2	ISM	SIRV6A	SIRV611	454	3	1	427	1	-427	5prime_fragment	FALSE	canonical	3	2656	junction_1	0	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGCCCAAGTAGACTCT	NA	False	NA	NA	False	NA	NA	NA	1304	1523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV6_+_1382_1468
76320	chr5	+	680	1	Intergenic	novelGene_662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCAGTGTAACTCCAAAT	NA	False	NA	NA	False	NA	NA	NA	21093137	21093817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_21093100_21093800
76321	chr11	+	879	1	Intergenic	novelGene_2529	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGCTTTTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	115504044	115504923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_115504000_115504900
76326	chr2	+	745	2	Intergenic	novelGene_2703	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	18	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGCACCAGGCTGTT	NA	False	NA	NA	False	NA	NA	NA	127451195	127452426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_127451411_127451896
76328	chr6	-	288	3	NNC	ENSMUSG00000109556.2	novel	323	3	NA	NA	-1026	1	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	4	66	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	82783090	82780748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_82780876_82781189_82781307_82783046
76330	chr3	-	494	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	66	24	-37	-21	multi-exon	TRUE	canonical	3	152	junction_3	20.138409955991	611	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCCATAAATGAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	88204240	88190087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
76331	chr5	+	1272	1	Intergenic	novelGene_709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTAAGAAATGGCACCA	NA	False	NA	NA	False	NA	NA	NA	38129294	38130566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_38129300_38130600
76332	chr7	+	605	2	Genic_Genomic	ENSMUSG00000109424.2	novel	637	1	NA	NA	-966	-4	multi-exon	FALSE	canonical	1	1	junction_1	0	10	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTAGGTCTGTTGCA	2116	False	NA	NA	False	NA	NA	NA	19579931	19581530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_19580173_19581166
76333	SIRV10002	+	795	2	Genic_Genomic	SIRV10002A	novel	10001	1	NA	NA	0	-50	multi-exon	FALSE	canonical	0	0	junction_1	0	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCATCTCTGATTCTGAC	NA	False	NA	NA	False	NA	NA	NA	0	9951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV10002_+_76_9231
76334	chr7	+	580	3	NNC	ENSMUSG00000007944.9	novel	2052	3	NA	NA	-6361	-1138	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	1.5	25	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTTTGTGTGGTCTTA	NA	False	NA	NA	False	NA	NA	NA	27346978	27355633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27347078_27354336_27354520_27355335
76336	chr12	+	1114	1	ISM	ENSMUSG00000044548.12	ENSMUST00000061273.12	3650	4	9090	20	8990	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	7	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATAAATCTTGTGCTGGC	3816	False	NA	NA	False	NA	NA	NA	71365747	71366861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_71365700_71366900
76337	chr13	-	674	4	Antisense	novelGene_ENSMUSG00000055732.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	30	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAATCTGTCTTTGTCGC	NA	False	NA	NA	False	NA	NA	NA	40868232	40858119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_40858491_40864617_40864722_40867304_40867393_40868121
76338	chr12	+	1252	1	Intergenic	novelGene_4352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATACGGAACCCAGTAAT	NA	False	NA	NA	False	NA	NA	NA	44579993	44581245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_44580000_44581200
76340	chr8	+	783	1	ISM	ENSMUSG00000038872.11	ENSMUST00000220518.2	17152	16	1013920	4284	241920	-4284	mono-exon	FALSE	NA	NA	NA	NA	NA	6	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCTTTTAATATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109683195	109683978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_109683200_109684000
76341	chr15	-	443	1	Intergenic	novelGene_3375	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATTTTGCCTTAGGCAC	NA	False	NA	NA	False	NA	NA	NA	102313982	102313539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_102313500_102314000
76342	chr4	-	784	3	NNC	ENSMUSG00000043621.14	novel	2460	4	NA	NA	13332	-80	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	17	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCCAACGCCCCTTTAC	NA	False	NA	NA	False	NA	NA	NA	138438835	138437227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_138437638_138437961_138438274_138438773
76343	chr5	-	591	2	NNC	ENSMUSG00000029657.16	novel	3240	17	NA	NA	-32	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTAAGCTGTTGGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	149559706	149540313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_149540633_149559434
76344	chr2	+	899	3	ISM	ENSMUSG00000070880.11	ENSMUST00000130618.8	398	4	9063	-510	-28	510	3prime_fragment	FALSE	canonical	2	5	junction_2	2.5	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGACTTCCCCAACTTGTG	NA	False	NA	NA	False	NA	NA	NA	70392478	70398087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_70392677_70394111_70394255_70397529
76346	chr14	-	766	1	Intergenic	novelGene_616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATATGTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	76732299	76731533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_76731500_76732300
76347	ERCC-00035	+	1105	1	FSM	ERCC-00035A	DQ459413	1114	1	0	9	0	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	16	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGGGTC	NA	False	NA	NA	False	NA	NA	NA	0	1105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00035_+_0_1100
76348	chr11	+	904	1	Antisense	novelGene_ENSMUSG00000045140.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTAGTAGGAGACTGT	NA	False	NA	NA	False	NA	NA	NA	84767165	84768069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_84767200_84768100
76349	chr14	-	926	1	ISM	ENSMUSG00000071531.4	ENSMUST00000226613.2	10354	2	15014	6	15014	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCATTTGTGTTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	33908576	33907650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_33907600_33908600
76352	chr11	-	737	1	Intergenic	novelGene_2277	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACCCCTAATCCACGAT	NA	False	NA	NA	False	NA	NA	NA	53567938	53567201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_53567200_53567900
76353	chr12	+	530	2	Intergenic	novelGene_4355	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCACACCGAGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	54703526	54704795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_54703683_54704421
76354	chr4	-	266	2	NNC	ENSMUSG00000050608.12	novel	436	3	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	101	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGCAAGCAATGCCTTTA	5301	False	NA	NA	False	NA	NA	NA	138858302	138831100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_138831294_138858229
76356	chr2	-	764	1	Intergenic	novelGene_2587	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATCTGTGTGTCTAACAG	2264	False	NA	NA	False	NA	NA	NA	27404762	27403998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_27404000_27404800
76358	chr3	+	189	1	Intergenic	novelGene_3170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAGCCCCTAGGCAG	NA	False	NA	NA	False	NA	NA	NA	103193533	103193722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_103193500_103193700
76359	chr17	-	369	1	Intergenic	novelGene_267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCAGGACCTCAGTCCCC	NA	False	NA	NA	False	NA	NA	NA	56199000	56198631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_56198600_56199000
76360	chr13	-	290	2	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-6966	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	143	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGACTAGCATGCCTT	NA	False	NA	NA	False	NA	NA	NA	65651573	65639613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65639775_65651444
76362	chr11	-	257	1	Antisense	novelGene_ENSMUSG00000040829.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGAAGGCGTTGCAGT	1391	False	NA	NA	False	NA	NA	NA	70357019	70356762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_70356800_70357000
76363	chr11	+	610	2	Intergenic	novelGene_2460	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	6	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATTAAAGTAGGTTTTG	NA	False	NA	NA	False	NA	NA	NA	95823308	95833892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_95823602_95833575
76364	chr3	+	403	1	ISM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	60725	6	14026	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTGTCTGTTGAAAT	5888	False	NA	NA	False	NA	NA	NA	41570890	41571293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_41570900_41571300
76368	chr2	-	964	4	Antisense	novelGene_ENSMUSG00000026787.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCAGATGCGGGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	22515085	22512272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_22512748_22513444_22513507_22513699_22513849_22514807
76371	chr1	-	688	2	FSM	ENSMUSG00000040485.6	ENSMUST00000036643.6	1143	2	450	5	450	-5	multi-exon	FALSE	canonical	1	1	junction_1	0	2	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGAGGTTGGTCCCTTC	NA	False	NA	NA	False	NA	NA	NA	167293899	167273242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_167273693_167293661
76372	chr10	+	661	2	Intergenic	novelGene_3465	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAAGACCCTTCCC	NA	False	NA	NA	False	NA	NA	NA	69131965	69146260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_69132082_69145715
76373	chr15	-	864	2	Genic_Genomic	ENSMUSG00000116371.2	novel	478	3	NA	NA	-157	-5622	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAATTTATTTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	98972707	98971640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_98971727_98971929
76374	chr3	-	921	2	ISM	ENSMUSG00000049404.8	ENSMUST00000054825.5	1325	6	35613	-61	35613	61	3prime_fragment	FALSE	canonical	2	2	junction_1	0	10	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAACCTTATAAATAGCA	NA	False	NA	NA	False	NA	NA	NA	67387243	67386243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_67386820_67386898
76375	chr8	+	1156	1	FSM	ENSMUSG00000097944.2	ENSMUST00000183021.2	2323	1	328	839	328	-839	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTGCGGATCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	120828648	120829804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_120828600_120829800
76376	chr7	+	1103	1	Intergenic	novelGene_2959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGGACCCACTTGGTAGAA	751	False	NA	NA	False	NA	NA	NA	44466187	44467290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_44466200_44467300
76377	chr1	+	1235	1	ISM	ENSMUSG00000044708.6	ENSMUST00000056136.4	5407	2	27951	3690	27951	-3690	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACGCCCACCACTAGAAA	NA	False	NA	NA	False	NA	NA	NA	172196727	172197962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_172196700_172198000
76379	chr17	-	382	2	Intergenic	novelGene_293	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGCTTGACTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	69688315	69687762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_69688029_69688199
76380	chr10	+	382	2	Intergenic	novelGene_3567	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	19	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATTAAAAAAAAAAAAAA	1596	False	NA	NA	False	NA	NA	NA	128098516	128103352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_128098581_128103034
76381	chr19	+	586	3	Intergenic	novelGene_1281	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	3.5	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAAATTTCCTTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	44658145	44663396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_44658227_44661584_44661701_44663007
76382	chr7	+	266	1	FSM	ENSMUSG00000073894.2	ENSMUST00000098135.2	1472	1	1196	10	1196	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	41	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTTGAACCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	106809847	106810113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_106809800_106810100
76384	chr13	-	675	3	FSM	ENSMUSG00000097326.3	ENSMUST00000180777.3	672	3	-13	10	-13	-10	multi-exon	FALSE	canonical	3	15	junction_1	5	60	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGGAGTTCTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	48427373	48425898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_48426292_48426385_48426533_48427238
76385	chr12	-	1016	1	ISM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	41191	1462	8305	-1462	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTGTTGCCTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	31643443	31642427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_31642400_31643400
76386	chr1	-	721	5	NNC	ENSMUSG00000025978.15	novel	1870	8	NA	NA	7828	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	3.56195171219375	45	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTGCTACTACTATCT	NA	False	NA	NA	False	NA	NA	NA	55237820	55210908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55211242_55224108_55224188_55233402_55233507_55234674_55234797_55237737
76387	chr11	+	701	1	NIC	ENSMUSG00000092626.2	novel	663	2	NA	NA	1627	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTAGGTCTGTGTACTTG	NA	False	NA	NA	False	NA	NA	NA	22810557	22811258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22810600_22811300
76388	chr2	+	955	4	FSM	ENSMUSG00000027416.3	ENSMUST00000028902.3	949	4	-26	20	-26	-20	multi-exon	FALSE	canonical	0	0	junction_1	0	3	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAAACATTTGGACTATG	NA	False	NA	NA	False	NA	NA	NA	142920366	142923613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_142920535_142920843_142920984_142921845_142921954_142923074
76389	chr2	-	298	2	ISM	ENSMUSG00000074594.10	ENSMUST00000099095.4	252	3	1169	-157	1169	1	3prime_fragment	FALSE	canonical	2	2	junction_1	0	2	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGGGGGTTCTGTGGTTC	4945	False	NA	NA	False	NA	NA	NA	164492514	164491549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_164491738_164492404
76390	chr12	+	173	1	ISM	ENSMUSG00000113707.2	ENSMUST00000222619.2	1906	2	2044	10	2044	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	69	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTTTAAAAGAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	70961076	70961249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_70961100_70961200
76391	chr6	+	1234	5	Antisense	novelGene_ENSMUSG00000030317.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	32	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGCAAAGACC	NA	False	NA	NA	False	NA	NA	NA	115222990	115229042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_115223445_115224190_115224320_115226792_115226905_115227340_115227442_115228604
76392	chr7	+	502	4	FSM	ENSMUSG00000053522.12	ENSMUST00000081457.5	754	4	234	18	8	-18	multi-exon	FALSE	canonical	2	2	junction_2	2.49443825784929	96	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCTGTAGTTCTGAC	NA	False	NA	NA	False	NA	NA	NA	28563887	28565691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28563912_28564255_28564345_28564958_28565161_28565504
76393	chr1	-	755	3	FSM	ENSMUSG00000026241.6	ENSMUST00000027449.6	1042	3	-2	289	-2	-289	multi-exon	FALSE	canonical	1	1	junction_2	0.5	7	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATATATATATTATATACA	NA	False	NA	NA	False	NA	NA	NA	86598295	86594301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86594521_86597365_86597677_86598070
76394	chr3	+	952	1	ISM	ENSMUSG00000027878.12	ENSMUST00000079812.8	10500	34	135858	14	135858	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	10	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCCATGTCAAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	98056711	98057663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_98056700_98057700
76395	chr11	-	301	2	FSM	ENSMUSG00000039781.15	ENSMUST00000145641.2	460	2	138	21	138	-21	multi-exon	FALSE	canonical	3	138	junction_1	0	4	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTAGGTGGCTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	119955656	119955280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_119955536_119955610
76396	chr13	+	639	4	FSM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	7	-25	7	25	multi-exon	FALSE	canonical	3	14	junction_3	8.73053390247253	74	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTTGGGGTGAACACAA	868	False	NA	NA	False	NA	NA	NA	111716801	111781389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_111716936_111717450_111717511_111778756_111779023_111781210
76398	chr3	-	745	3	FSM	ENSMUSG00000096935.6	ENSMUST00000181837.3	987	3	-211	453	-211	0	multi-exon	FALSE	canonical	2	3	junction_2	2	56	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTCGTAAGAATCTCGAG	NA	False	NA	NA	False	NA	NA	NA	88085303	88079315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88079566_88083157_88083243_88084893
76399	chr15	-	644	4	FSM	ENSMUSG00000022594.15	ENSMUST00000023259.15	4023	4	63	3316	31	427	multi-exon	FALSE	canonical	2	4	junction_2	0.471404520791032	26	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCCCAATTCACTCCACC	NA	False	NA	NA	False	NA	NA	NA	74624832	74623016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_74623277_74623391_74623494_74623703_74623887_74624733
76400	chr10	+	472	3	NNC	ENSMUSG00000100550.3	novel	642	3	NA	NA	3118	2	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	6	93	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTGGAGGTTGGGAAGT	NA	False	NA	NA	False	NA	NA	NA	95193867	95199073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95193983_95194128_95194221_95198808
76402	chr14	+	407	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	1	10	1	0	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	11203	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	54664366	54667203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
76403	chr17	+	588	6	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	4	19010	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	82.110657042798	25	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCACTTGGCATGGTT	NA	False	NA	NA	False	NA	NA	NA	95057569	95101570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_95057661_95060130_95060304_95062638_95062734_95063861_95063952_95092912_95092936_95101454
76404	chr4	+	312	2	NNC	ENSMUSG00000028212.17	novel	461	3	NA	NA	222	-1057	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTATTTACAAAGGTTGT	1036	False	NA	NA	False	NA	NA	NA	11192818	11203618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_11192903_11203390
76405	chr4	-	347	1	ISM	ENSMUSG00000028465.17	ENSMUST00000123985.2	937	2	2990	12	-1241	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	35	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAACTTCTTATTATCTTC	2814	False	NA	NA	False	NA	NA	NA	43559701	43559354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_43559400_43559700
76406	chr4	+	879	1	Intergenic	novelGene_2059	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATTGTGAAGCCTGAAT	NA	False	NA	NA	False	NA	NA	NA	146313980	146314859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146314000_146314900
76408	chr8	-	361	1	ISM	ENSMUSG00000043668.14	ENSMUST00000109621.10	3356	7	100868	75	100651	-75	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATCTGTGGACTGTATT	NA	False	NA	NA	False	NA	NA	NA	90974103	90973742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_90973700_90974100
76409	chr6	-	479	1	Intergenic	novelGene_4124	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTAGCTACTGTGTGGGGT	NA	False	NA	NA	False	NA	NA	NA	17829125	17828646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_17828600_17829100
76411	chr9	+	571	1	Intergenic	novelGene_1173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACACATGAGCATCCCTC	NA	False	NA	NA	False	NA	NA	NA	114202610	114203181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_114202600_114203200
76413	chr2	-	444	3	Antisense	novelGene_ENSMUSG00000085949.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	2	33	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGAGAAGGAATATGCTT	NA	False	NA	NA	False	NA	NA	NA	172136458	172132023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_172132278_172134257_172134405_172136415
76414	chr18	-	1104	1	NIC	ENSMUSG00000024370.18	novel	2084	17	NA	NA	255	-2656	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTTTTTGTTGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	34784516	34783412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34783400_34784500
76415	chr7	-	832	4	FSM	ENSMUSG00000036111.9	ENSMUST00000207178.2	912	4	177	-97	177	-6	multi-exon	FALSE	canonical	3	61	junction_1	6.37704215656966	29	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGGGACATGACTGCAT	NA	False	NA	NA	False	NA	NA	NA	108774237	108737784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_108738184_108739788_108739915_108742662_108742877_108774144
76416	chr6	-	1211	1	FSM	ENSMUSG00000065505.3	ENSMUST00000083571.3	99	1	82	-1194	82	1194	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTGATCCAAATTCGG	NA	False	NA	NA	False	NA	NA	NA	51246808	51245597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51245600_51246800
76417	chr5	+	507	2	Antisense	novelGene_ENSMUSG00000032690.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_1	0	29	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAGTTCTCAAAACTAGT	NA	False	NA	NA	False	NA	NA	NA	120872901	120874516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_120873222_120874329
76419	chr2	-	1649	1	Intergenic	novelGene_2667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAACGCCAATTGCTTTA	6470	False	NA	NA	False	NA	NA	NA	84427824	84426175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_84426200_84427800
76420	chr1	+	675	3	FSM	ENSMUSG00000026251.14	ENSMUST00000189970.2	538	3	22	-159	-8	159	multi-exon	FALSE	canonical	2	2	junction_1	1.5	29	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGTGTGCATTGGAAG	NA	False	NA	NA	False	NA	NA	NA	87118350	87119647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87118465_87118696_87118852_87119241
76421	chr7	+	722	6	FSM	ENSMUSG00000038387.10	ENSMUST00000044111.10	995	6	148	125	26	-125	multi-exon	FALSE	canonical	3	253	junction_4	17.1860408471527	52	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTGTGTGCCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	44667532	44670946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44667593_44669523_44669612_44669726_44669830_44669913_44670023_44670510_44670630_44670703
76422	chr11	-	927	1	Intergenic	novelGene_2374	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGCGGAGGAGAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	60428702	60427775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_60427800_60428700
76424	chr4	+	679	3	FSM	ENSMUSG00000029019.9	ENSMUST00000103231.5	781	3	75	27	75	-27	multi-exon	FALSE	canonical	3	7	junction_1	1	38	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCGTATTTCCTGCTTTTG	NA	False	NA	NA	False	NA	NA	NA	148070319	148071635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_148070559_148070752_148070976_148071418
76426	chr6	+	739	3	ISM	ENSMUSG00000041377.13	ENSMUST00000035244.6	823	4	4080	0	4080	0	3prime_fragment	FALSE	canonical	1	1	junction_2	1	6	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCACCGAGTTAGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	120174863	120177295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_120175096_120175603_120175789_120176973
76427	chr19	-	1141	1	ISM	ENSMUSG00000061451.14	ENSMUST00000077066.8	4006	2	3635	1426	2985	-1426	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAATAAAGTTATGAAA	2439	False	NA	NA	False	NA	NA	NA	5131924	5130783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5130800_5131900
76429	chr2	-	721	1	Genic_Genomic	ENSMUSG00000087151.2	novel	NA	NA	NA	NA	-191	-4211	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAGCGACATTGAATAAG	NA	False	NA	NA	False	NA	NA	NA	128907797	128907076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_128907100_128907800
76432	chr8	-	1288	2	Antisense	novelGene_ENSMUSG00000079038.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGAGTGCTAACGAACACA	NA	False	NA	NA	False	NA	NA	NA	69728103	69724243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_69725359_69727930
76433	chr2	+	797	6	FSM	ENSMUSG00000015093.16	ENSMUST00000114265.9	808	6	-5	16	-5	-16	multi-exon	FALSE	canonical	0	0	junction_3	1.46969384566991	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATCTCTGCCCCAAGTAA	567	False	NA	NA	False	NA	NA	NA	25346844	25348772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_25346927_25347672_25347783_25347860_25347987_25348126_25348234_25348315_25348492_25348576
76434	chr6	+	1083	1	Intergenic	novelGene_4202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAAATGTTGGAGTATCT	NA	False	NA	NA	False	NA	NA	NA	88262845	88263928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_88262800_88263900
76435	chr18	-	173	1	Intergenic	novelGene_4534	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	133	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGTGCCACTAGACTCAG	NA	False	NA	NA	False	NA	NA	NA	35955657	35955484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_35955500_35955700
76438	chr11	-	378	3	Intergenic	novelGene_2457	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGCTGGATGGATGCA	NA	False	NA	NA	False	NA	NA	NA	95439735	95438435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_95438555_95438605_95438770_95439640
76439	chr3	+	347	2	Antisense	novelGene_ENSMUSG00000039865.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	18	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTGTCTGATATGTTTT	NA	False	NA	NA	False	NA	NA	NA	121262046	121264970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_121262125_121264701
76440	chr8	-	769	5	Antisense	novelGene_ENSMUSG00000031860.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGGCAGCAAAGGCATG	7006	False	NA	NA	False	NA	NA	NA	70324936	70311726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70311801_70319111_70319252_70322676_70322831_70323225_70323332_70324641
76441	chr12	+	1057	4	NNC	ENSMUSG00000112348.2	novel	1259	2	NA	NA	-1219	57960	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0.942809041582063	15	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	55543286	55604696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55543363_55544565_55544736_55577715_55577824_55603993
76442	chr2	+	1284	1	Intergenic	novelGene_2678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTAACATCTTGCCAAG	NA	False	NA	NA	False	NA	NA	NA	105203942	105205226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_105203900_105205200
76443	chr12	+	288	2	ISM	ENSMUSG00000097121.3	ENSMUST00000221044.2	803	4	2456	5	2365	-5	3prime_fragment	FALSE	canonical	1	3	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAACTTGTTTGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	101052456	101054433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_101052612_101054300
76444	chr13	-	191	1	Intergenic	novelGene_1410	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAAGCTATATTAA	NA	False	NA	NA	False	NA	NA	NA	64374124	64373933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_64373900_64374100
76445	chr5	+	165	1	Intergenic	novelGene_870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	139764829	139764994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_139764800_139765000
76446	chr6	+	851	4	NNC	ENSMUSG00000029761.17	novel	4041	12	NA	NA	44	4709	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	100.677703589226	34	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGAATGTGGTGGGTT	1349	False	NA	NA	False	NA	NA	NA	34686468	34723852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_34686633_34718723_34718871_34722553_34722951_34723709
76447	chr5	-	791	3	ISM	ENSMUSG00000001844.11	ENSMUST00000162066.8	820	6	20	3808	3	252	5prime_fragment	FALSE	canonical	3	33	junction_2	5.5	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAATCCCAACCCTTTGAA	5317	False	NA	NA	False	NA	NA	NA	143314963	143313797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_143314326_143314432_143314653_143314920
76448	chr11	-	494	2	NNC	ENSMUSG00000018446.9	novel	703	3	NA	NA	19	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	475	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCAGGAAAGTTGAGGTT	NA	False	NA	NA	False	NA	NA	NA	70873814	70868677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70869071_70873713
76449	chr10	-	579	4	ISM	ENSMUSG00000034917.9	ENSMUST00000218484.2	685	5	2	1609	2	-19	5prime_fragment	FALSE	canonical	0	0	junction_3	61.0810026840497	15	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAAGACCTCTGGAAGAG	7854	False	NA	NA	False	NA	NA	NA	81121601	81118629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_81118875_81119329_81119440_81119516_81119574_81121434
76451	chr4	+	1237	7	ISM	ENSMUSG00000058006.13	ENSMUST00000071642.11	17970	102	114	105624	50	5413	5prime_fragment	FALSE	canonical	2	9	junction_6	5.16397779494322	9	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGATGTGGTATGACGT	43	False	NA	NA	False	NA	NA	NA	32657232	32669583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_32657353_32662832_32663060_32666392_32666618_32667090_32667199_32667271_32667465_32668798_32669042_32669462
76452	chr4	+	867	2	Intergenic	novelGene_2178	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	23	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTTGAAAGCAGTGATGAA	NA	False	NA	NA	False	NA	NA	NA	154766240	154767518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_154766350_154766760
76455	chr7	+	935	2	Antisense	novelGene_ENSMUSG00000097162.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCGACCTGTTGGCAGGG	NA	False	NA	NA	False	NA	NA	NA	89773430	89779204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_89774241_89779079
76456	chr11	+	901	9	FSM	ENSMUSG00000018672.16	ENSMUST00000018816.14	930	9	5	24	0	-24	multi-exon	FALSE	canonical	3	213	junction_8	11.8420595759353	61	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTACATTTTTCCCCCC	780	False	NA	NA	False	NA	NA	NA	96740706	96752005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_96740823_96741498_96741568_96744260_96744343_96744883_96744976_96745409_96745466_96746081_96746160_96747497_96747550_96748378_96748418_96751688
76457	chr6	-	506	1	ISM	ENSMUSG00000063455.17	ENSMUST00000117556.8	10916	20	125988	4288	19407	-1442	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTCTTAGTTGCATT	5520	False	NA	NA	False	NA	NA	NA	38104902	38104396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_38104400_38104900
76458	chr7	+	880	4	ISM	ENSMUSG00000030781.14	ENSMUST00000118169.8	2277	14	5190	20	292	-20	3prime_fragment	FALSE	canonical	1	3	junction_1	2.82842712474619	18	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAACTGCCCTCCTAACA	NA	False	NA	NA	False	NA	NA	NA	127870037	127871582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127870125_127870206_127870423_127870920_127871051_127871135
76461	chr17	+	443	2	NNC	ENSMUSG00000034165.17	novel	283	2	NA	NA	11	-23182	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	66	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTAAATGATCGTGTATG	NA	False	NA	NA	False	NA	NA	NA	47815986	47866629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47816192_47866391
76463	chr8	-	1155	1	Antisense	novelGene_ENSMUSG00000109784.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTGAAGAGAGGAGAACAG	NA	False	NA	NA	False	NA	NA	NA	18916271	18915116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_18915100_18916300
76464	chr1	+	567	2	NNC	ENSMUSG00000100819.2	novel	571	5	NA	NA	-12464	421	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	12	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACACATTTTTGTAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	21236747	21258072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_21236776_21257533
76467	chr2	-	307	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	-39	-97	-39	97	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	172351650	172351343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172351300_172351600
76469	chr10	+	459	2	Genic_Genomic	ENSMUSG00000112018.2	novel	2212	1	NA	NA	-23253	-1442	multi-exon	FALSE	canonical	0	0	junction_1	0	1	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACTATGCCTAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	61835929	61859952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_61835973_61859536
76470	chr17	+	865	1	Antisense	novelGene_ENSMUSG00000039615.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTCATCCAGGGCCCCA	NA	False	NA	NA	False	NA	NA	NA	26052063	26052928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_26052100_26052900
76472	chr11	+	548	4	NIC	ENSMUSG00000072640.12	novel	8035	4	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	93.9834500797289	61	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTGGTGAGGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	78717409	78730098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78717463_78726843_78726985_78728915_78729120_78729948
76473	chr9	-	700	3	Antisense	novelGene_ENSMUSG00000032249.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	7	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATCTCCATCTCTCGC	NA	False	NA	NA	False	NA	NA	NA	62251320	62248795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_62249271_62249378_62249514_62251230
76475	chr10	+	360	1	Intergenic	novelGene_3494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTGTGACATCTGTTA	NA	False	NA	NA	False	NA	NA	NA	81958377	81958737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_81958400_81958700
76476	chrX	+	390	2	ISM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	7	128794	7	144	5prime_fragment	FALSE	canonical	3	133	junction_1	0	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTCTCTGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	161684634	161686710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_161684744_161686429
76477	chr19	+	411	4	Antisense	novelGene_ENSMUSG00000059363.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	12	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCGCGGCCGCTCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	24244702	24257939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_24244776_24249718_24249817_24254568_24254640_24257770
76478	chr1	+	1338	1	Intergenic	novelGene_366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCACTAATTATGCTTC	NA	False	NA	NA	False	NA	NA	NA	52220207	52221545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_52220200_52221500
76480	chrX	-	825	5	Fusion	ENSMUSG00000106388.2_ENSMUSG00000081195.3	novel	322	3	NA	NA	-65	102	multi-exon	FALSE	canonical	0	0	junction_3	5.53962995154008	26	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCCTCAGGTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	36865149	36857920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_36858142_36859175_36859222_36861051_36861185_36864533_36864809_36864999
76482	chr9	+	476	2	FSM	ENSMUSG00000098332.3	ENSMUST00000184126.3	496	2	12	8	0	-8	multi-exon	FALSE	canonical	3	439	junction_1	0	1859	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATGAATCTAAGTTATTT	NA	False	NA	NA	False	NA	NA	NA	72947011	72950053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72947148_72949713
76483	chr13	+	631	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	6	11	6	-11	multi-exon	FALSE	canonical	3	1416	junction_1	0	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGATGAACTATTTCTT	5984	False	NA	NA	False	NA	NA	NA	54738025	54738960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54738233_54738536
76484	chr9	+	638	3	NNC	ENSMUSG00000044229.10	novel	4871	9	NA	NA	23	-205482	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2	24	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGGAAACAAAAATGAAGTC	NA	False	NA	NA	False	NA	NA	NA	48073343	48105346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_48073558_48102995_48103155_48105081
76485	chr12	-	1234	10	NNC	ENSMUSG00000020633.15	novel	1434	9	NA	NA	1	2106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.993807989999907	2	26	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATTAAAAAAAAAATAGA	NA	False	NA	NA	False	NA	NA	NA	28602301	28563948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28564160_28566645_28566715_28574673_28574775_28576690_28576815_28578617_28578661_28580348_28580487_28585450_28585580_28591470_28591548_28597209_28597262_28602011
76486	chr5	+	363	3	Intergenic	novelGene_825	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTCACAGTTTTGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	114703365	114704888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_114703537_114703980_114704021_114704736
76488	chr18	+	1361	1	NIC	ENSMUSG00000044176.13	novel	7817	9	NA	NA	19	-102026	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTACACCCCAAAGGGAT	NA	False	NA	-85	True	NA	NA	NA	62682033	62683394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_62682000_62683400
76491	chr5	+	498	5	ISM	ENSMUSG00000089798.11	ENSMUST00000239050.2	795	6	36	2098	10	-2098	5prime_fragment	FALSE	canonical	2	3	junction_3	1.08972473588517	12	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGCCACCTGGACAAAGG	NA	False	NA	NA	False	NA	NA	NA	107682612	107694145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_107682675_107686995_107687090_107691785_107691880_107693553_107693723_107694066
76492	chr3	-	331	1	Intergenic	novelGene_3160	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAACCGACACTGAGTTGG	2649	False	NA	NA	False	NA	NA	NA	96357466	96357135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_96357100_96357500
76493	chr4	-	423	4	Antisense	novelGene_ENSMUSG00000042198.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACACCATAAACCTGGGT	NA	False	NA	NA	False	NA	NA	NA	3943511	3939392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_3939526_3941244_3941311_3942719_3942819_3943386
76494	chr7	-	1152	5	Fusion	ENSMUSG00000014686.9_ENSMUSG00000109214.2	novel	1635	6	NA	NA	19	-6401	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCATTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	19605344	19592423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_19592864_19595033_19595247_19595585_19595668_19602045_19602161_19605042
76495	chr1	-	345	2	FSM	ENSMUSG00000102014.2	ENSMUST00000188163.2	465	2	35	85	35	-85	multi-exon	FALSE	canonical	3	3	junction_1	0	67	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTCTGAAGTTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	127701756	127681437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_127681691_127701664
76498	chr9	+	959	1	NIC	ENSMUSG00000040204.7	novel	2188	4	NA	NA	0	-1828	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTGCTTTTGTCTCTGCT	NA	False	NA	NA	False	NA	NA	NA	65797643	65798602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_65797600_65798600
76499	chr4	-	1163	1	Intergenic	novelGene_1898	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTTCTCAGGAGACA	NA	False	NA	NA	False	NA	NA	NA	83169539	83168376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_83168400_83169500
76500	chrX	+	600	3	FSM	ENSMUSG00000053909.9	ENSMUST00000115150.4	763	3	70	93	70	-93	multi-exon	FALSE	canonical	2	4	junction_1	1	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTGTGCCAGCAACATC	NA	False	NA	NA	False	NA	NA	NA	37155421	37160475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_37155824_37158275_37158322_37160323
76501	chr2	-	594	1	Intergenic	novelGene_2808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGGAGCTCTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	170019799	170019205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_170019200_170019800
76502	chr2	-	577	1	ISM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	29559	2469	29487	-51	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGATACTCAGGATTCCC	NA	False	NA	NA	False	NA	NA	NA	6105463	6104886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_6104900_6105500
76503	chr11	-	1462	4	ISM	ENSMUSG00000018168.9	ENSMUST00000103141.4	3658	8	56786	1720	6	636	3prime_fragment	FALSE	canonical	0	0	junction_2	0.942809041582063	1	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCCTATGCCCAGATCC	4964	False	NA	NA	False	NA	NA	NA	98379840	98357447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_98358513_98367752_98367870_98376399_98376517_98379677
76506	chr3	-	1247	1	Genic_Genomic	ENSMUSG00000048109.11	novel	NA	NA	NA	NA	7390	956	mono-exon	FALSE	NA	NA	NA	NA	NA	3	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTAACCTTAGTGTTCACC	6537	False	NA	NA	False	NA	NA	NA	107233027	107231780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_107231800_107233000
76507	chr1	+	834	3	Antisense	novelGene_ENSMUSG00000026478.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAACATAAAAAAATGC	2226	False	NA	NA	False	NA	NA	NA	153092569	153094717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_153092610_153093652_153093803_153094073
76508	chr8	+	659	2	Antisense	novelGene_ENSMUSG00000048484.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	16	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGGAAGTCTCTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	4725618	4728206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_4725739_4727667
76509	chr19	+	1121	2	ISM	ENSMUSG00000024998.18	ENSMUST00000182589.8	6769	22	58349	-5	45805	5	3prime_fragment	FALSE	canonical	3	22	junction_1	0	9	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATCATATGAGCATGA	NA	False	NA	NA	False	NA	NA	NA	38769162	38772037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_38769227_38770980
76512	chr10	+	1575	1	Intergenic	novelGene_3461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAAATAAGGTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	66955370	66956945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_66955400_66956900
76513	chr7	-	1201	5	NNC	ENSMUSG00000082739.4	novel	1169	3	NA	NA	-31040	400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTAGTACTGTTAATTAA	NA	False	NA	NA	False	NA	NA	NA	103052690	103016326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_103016792_103017181_103017715_103018908_103019022_103036258_103036322_103052663
76514	chr19	+	543	4	NNC	ENSMUSG00000032946.17	novel	2124	4	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	116.70761186258	2	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGAGTGAGGGTCATGTC	NA	False	NA	NA	False	NA	NA	NA	6451719	6453665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6451894_6452501_6452611_6453060_6453117_6453461
76515	chr13	+	154	1	Intergenic	novelGene_1373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACGAAAAAACAAAA	5204	False	NA	NA	False	NA	NA	NA	55218284	55218438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_55218300_55218400
76518	chr10	+	1031	1	Intergenic	novelGene_3524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAGTTAAAACAATATAAA	NA	False	NA	NA	False	NA	NA	NA	108192445	108193476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_108192400_108193500
76520	chr1	-	507	1	Intergenic	novelGene_461	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTACCGAGCATTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	139328663	139328156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_139328200_139328700
76521	chr13	-	477	2	ISM	ENSMUSG00000100760.2	ENSMUST00000190684.2	526	3	4972	-108	4972	-4	3prime_fragment	FALSE	canonical	2	4	junction_1	0	31	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACCGGCTGAGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	37614153	37605812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_37606132_37613995
76524	chr1	+	1018	1	Intergenic	novelGene_502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATGCT	8821	False	NA	NA	False	NA	NA	NA	191308375	191309393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_191308400_191309400
76525	chr5	-	1129	1	Genic_Genomic	ENSMUSG00000037936.16	novel	NA	NA	NA	NA	-387	-14006	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGATTGGTTGGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	125417459	125416330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_125416300_125417500
76526	chr10	-	905	1	Intergenic	novelGene_3409	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCAGAGCCTGATTAAAAG	NA	False	NA	NA	False	NA	NA	NA	21947804	21946899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_21946900_21947800
76527	chr4	+	841	1	Intergenic	novelGene_1973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATAACCGCGTTTATTAT	NA	False	NA	NA	False	NA	NA	NA	132366739	132367580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_132366700_132367600
76528	chr7	-	291	1	Intergenic	novelGene_2906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	145	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	28074613	28074322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_28074300_28074600
76529	chrX	-	739	1	Genic_Genomic	ENSMUSG00000016382.16	novel	NA	NA	NA	NA	602	179	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAACAAAGGCTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	74917578	74916839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_74916800_74917600
76530	chr11	+	413	4	FSM	ENSMUSG00000070394.11	ENSMUST00000133967.8	421	4	4	4	4	-3	multi-exon	FALSE	canonical	3	250	junction_1	597.808404832927	2009	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAAAGAACTTTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	69729343	69730435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69729400_69729745_69729778_69730013_69730095_69730191
76531	chr13	+	309	1	Intergenic	novelGene_1564	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACTAGCTGATGAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	114061715	114062024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_114061700_114062000
76532	chrX	+	1118	5	Intergenic	novelGene_3952	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTATGAGCATATTTCT	NA	False	NA	NA	False	NA	NA	NA	65199885	65237243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_65199970_65201148_65201251_65202206_65202385_65234567_65234653_65236574
76533	chr5	-	399	1	Genic_Genomic	ENSMUSG00000029090.13	novel	NA	NA	NA	NA	11728	7	mono-exon	FALSE	NA	NA	NA	NA	NA	63	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGGTGGCTTATGTTTA	NA	False	NA	NA	False	NA	NA	NA	50117689	50117290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_50117300_50117700
76534	chr14	-	599	1	FSM	ENSMUSG00000033111.17	ENSMUST00000223697.2	915	1	-42	358	1	-358	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCGAGTGCTGACTTGCT	NA	False	NA	NA	False	NA	NA	NA	10185504	10184905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_10184900_10185500
76539	chr19	-	509	2	FSM	ENSMUSG00000118263.2	ENSMUST00000235637.2	405	2	-108	4	-108	-4	multi-exon	FALSE	canonical	3	25	junction_1	0	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCTAAGTTCTTTACTC	9092	False	NA	NA	False	NA	NA	NA	5357552	5355909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5356162_5357295
76540	chr18	+	1009	1	Intergenic	novelGene_4536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGGACAGCCAGGGCTAA	3999	False	NA	NA	False	NA	NA	NA	38468599	38469608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_38468600_38469600
76541	chr10	-	178	1	Intergenic	novelGene_3568	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTTTTAAAAAAAAGAAAAA	8442	False	NA	NA	False	NA	NA	NA	128739290	128739112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_128739100_128739300
76542	chr13	-	883	3	NNC	ENSMUSG00000113404.2	novel	2746	2	NA	NA	-2759	-5906	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	3	8	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGTCCAGTATATAATAC	NA	False	NA	NA	False	NA	NA	NA	54484658	54469829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_54470454_54481726_54481884_54484556
76543	chr11	-	1106	4	NNC	ENSMUSG00000037907.17	novel	3105	15	NA	NA	104	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.35702260395516	3	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGACTGATTCTGAGGC	5920	False	NA	NA	False	NA	NA	NA	77380388	77361356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77362078_77368245_77368371_77368468_77368605_77380264
76545	chr7	+	596	5	ISM	ENSMUSG00000086784.3	ENSMUST00000125249.3	2244	6	-34	4887	-34	-4887	5prime_fragment	FALSE	canonical	0	0	junction_4	0.866025403784439	22	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTCCCACCCCCAGTTCA	2998	False	NA	NA	False	NA	NA	NA	4880117	4895085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4880193_4894182_4894330_4894456_4894667_4894829_4894901_4894992
76548	chr6	-	428	3	Antisense	novelGene_ENSMUSG00000042213.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCGGATAGGAGTTCGCGC	2274	False	NA	NA	False	NA	NA	NA	116261776	116241221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_116241273_116250532_116250831_116261697
76549	chr11	-	675	1	Intergenic	novelGene_2400	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAACATGCTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	70282536	70281861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_70281900_70282500
76551	chr6	-	548	3	FSM	ENSMUSG00000033769.17	ENSMUST00000162786.2	565	3	21	-4	3	4	multi-exon	FALSE	canonical	3	244	junction_1	24	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCATTGAGTAGTCTGC	NA	False	NA	NA	False	NA	NA	NA	85046436	84981795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_84982019_84988299_84988466_85046277
76552	chr3	-	719	3	NNC	ENSMUSG00000048652.13	novel	729	4	NA	NA	-4	-1810	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3	13	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACGGCGTGGTGCGCTG	NA	False	NA	NA	False	NA	NA	NA	146391234	146388014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_146388527_146390687_146390851_146391190
76553	chr7	-	360	5	NNC	ENSMUSG00000061028.8	novel	2151	21	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	115.382786844486	45	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	NA	False	NA	NA	NA	19338377	19314967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19315084_19315305_19315331_19316156_19316225_19337120_19337231_19338336
76554	chr6	+	1367	1	Genic_Genomic	ENSMUSG00000079426.14	novel	NA	NA	NA	NA	19	-9437	mono-exon	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTATCCCAGCCTGCCAT	NA	False	NA	NA	False	NA	NA	NA	113355172	113356539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_113355200_113356500
76555	chr10	-	1307	1	Intergenic	novelGene_3381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCTAACAACAGCGACGC	NA	False	NA	NA	False	NA	NA	NA	4284394	4283087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_4283100_4284400
76559	chr7	-	412	3	NNC	ENSMUSG00000047649.10	novel	489	2	NA	NA	40	2694	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_1	107	187	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACGATTTCACAGGCCT	2198	False	NA	NA	False	NA	NA	NA	19093366	19087244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19087461_19093014_19093157_19093312
76561	chr1	+	821	4	FSM	ENSMUSG00000073633.10	ENSMUST00000139562.8	881	4	45	15	45	-15	multi-exon	FALSE	canonical	3	8	junction_1	23.5843639350783	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTATCAGCAGGCTTGT	4289	False	NA	NA	False	NA	NA	NA	84844201	84878193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_84844265_84858812_84858922_84874210_84874384_84877717
76562	chr17	+	949	1	Antisense	novelGene_ENSMUSG00000059208.16_AS_novelGene_ENSMUSG00000079557.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACGCCTGGCCTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	33903809	33904758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_33903800_33904800
76563	chr16	-	532	1	FSM	ENSMUSG00000107002.2	ENSMUST00000202722.2	1445	1	184	729	184	-729	mono-exon	FALSE	NA	NA	NA	NA	NA	73	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCTGATTAATAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	31767128	31766596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31766600_31767100
76565	chr2	-	545	2	FSM	ENSMUSG00000097187.2	ENSMUST00000181711.2	726	2	177	4	177	-4	multi-exon	FALSE	canonical	3	6	junction_1	0	28	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGACACTCTCCTGCTTC	NA	False	NA	NA	False	NA	NA	NA	84573822	84572516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84573045_84573805
76566	chr1	-	640	6	NNC	ENSMUSG00000006010.15	novel	665	5	NA	NA	9	813	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	58.3390092476724	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATAAGAACGGTTGTTCA	979	False	NA	NA	False	NA	NA	NA	150268485	150259219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_150259394_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268440
76567	chr4	-	286	1	Intergenic	novelGene_1812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGTTAGCATCGTAGAGA	6758	False	NA	NA	False	NA	NA	NA	31963821	31963535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_31963500_31963800
76568	chr4	-	510	2	Intergenic	novelGene_1811	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAGGCATGTCCAGATTC	8568	False	NA	NA	False	NA	NA	NA	31962011	31961398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_31961733_31961835
76569	chr9	+	485	1	ISM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	22037	22	11639	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATATTGTTTCTAATT	868	False	NA	27	True	NA	NA	NA	108561333	108561818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108561300_108561800
76570	chr5	-	1224	2	NIC	ENSMUSG00000090561.3	novel	645	2	NA	NA	-8357	635	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	4	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAATTTCTAGGGAGGAA	NA	False	NA	NA	False	NA	NA	NA	73378343	73366863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_73367995_73378250
76571	chr14	-	382	3	Intergenic	novelGene_557	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	19	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTAGCCAAGTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	47601316	47594611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_47594780_47600014_47600062_47601149
76572	chr18	-	377	2	FSM	ENSMUSG00000117662.2	ENSMUST00000236263.2	414	2	8	29	8	-24	multi-exon	FALSE	canonical	3	15	junction_1	0	124	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAAAAACCCTGGAATA	NA	False	NA	NA	False	NA	NA	NA	42408254	42407475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_42407614_42408015
76573	chr13	-	809	2	Genic_Genomic	ENSMUSG00000074635.4	novel	1133	1	NA	NA	41	-16	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTAAACACTTTTCTTCAA	NA	False	NA	NA	False	NA	NA	NA	119624878	119623812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_119624118_119624374
76574	chr9	+	314	2	ISM	ENSMUSG00000074039.11	ENSMUST00000124664.8	1285	4	-69	8323	-69	-2258	5prime_fragment	FALSE	canonical	3	21	junction_1	0	30	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACAGCTTAGTTTCCTA	NA	False	NA	NA	False	NA	NA	NA	114197301	114197974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_114197553_114197911
76575	chr15	-	337	3	Intergenic	novelGene_3365	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	3.5	78	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAGAATTTTGTATTCA	NA	False	NA	NA	False	NA	NA	NA	97302464	97299684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97299826_97301709_97301808_97302366
76579	chr10	-	475	1	Intergenic	novelGene_3532	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCTGATGTTTGTTTTT	2939	False	NA	NA	False	NA	NA	NA	115219769	115219294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_115219300_115219800
76581	chr10	+	590	2	NNC	ENSMUSG00000000903.4	novel	729	2	NA	NA	-2136	4	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	0	29	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGAGGATGTGGAGGTT	NA	False	NA	NA	False	NA	NA	NA	75776754	75785475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75776846_75784976
76583	chr12	-	892	2	NNC	ENSMUSG00000055917.16	novel	2438	13	NA	NA	-8	-51329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTATGCTTTATTTACT	NA	False	NA	NA	False	NA	NA	NA	40495781	40461830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_40462606_40495664
76584	chr6	+	229	2	FSM	ENSMUSG00000086863.2	ENSMUST00000141307.2	361	2	51	81	51	-81	multi-exon	FALSE	canonical	3	6	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATACAATCCCTTCTTTCC	1414	False	NA	NA	False	NA	NA	NA	145128051	145133275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145128096_145133090
76586	chr9	-	1414	8	ISM	ENSMUSG00000032274.10	ENSMUST00000034811.8	2373	9	43	2417	43	-2415	5prime_fragment	FALSE	canonical	0	0	junction_2	0.494871659305393	2	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAAGACATTGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	54100683	54075637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_54076033_54079086_54079250_54079959_54080075_54080612_54080728_54083759_54083937_54087465_54087621_54093964_54094116_54100540
76587	chr16	-	1020	2	Antisense	novelGene_ENSMUSG00000014232.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	46	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGTGTTAGGAGATAGA	NA	False	NA	NA	False	NA	NA	NA	3760160	3758933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_3759022_3759228
76588	chr2	+	850	4	NNC	ENSMUSG00000083722.3	novel	2918	21	NA	NA	-7	-3897	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	1.69967317119759	9	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTAAATCCTTCCCCTAG	NA	False	NA	NA	False	NA	NA	NA	38559421	38562667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_38559477_38560826_38560923_38561172_38561237_38562032
76590	chr15	-	1038	1	FSM	ENSMUSG00000100084.3	ENSMUST00000188271.3	1130	1	87	5	87	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAATTATTTTTACTAGA	4373	False	NA	NA	False	NA	NA	NA	99871081	99870043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99870000_99871100
76591	chr16	+	242	1	ISM	ENSMUSG00000052917.16	ENSMUST00000089360.10	4802	23	114333	28	3613	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAAATTGTAATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56010104	56010346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_56010100_56010300
76593	chr1	-	966	1	FSM	ENSMUSG00000081984.4	ENSMUST00000119972.4	1051	1	86	-1	86	1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCACTGTTATGTTCTAGT	NA	False	NA	NA	False	NA	NA	NA	88133418	88132452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_88132500_88133400
76594	chr15	-	763	2	ISM	ENSMUSG00000046034.9	ENSMUST00000059662.8	1491	7	21830	52	-2	-52	3prime_fragment	FALSE	canonical	3	243	junction_1	0	19	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCCAATGAAAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	27608949	27606056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_27606548_27608677
76595	chr11	+	319	1	Intergenic	novelGene_2381	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTTGCGTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	63819947	63820266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_63819900_63820300
76596	chr11	-	881	1	Antisense	novelGene_ENSMUSG00000020464.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCGTGGAAGGCCTGGGC	NA	False	NA	NA	False	NA	NA	NA	29081631	29080750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_29080800_29081600
76597	chr6	-	648	3	Intergenic	novelGene_4269	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1	6	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACTACTTCCCTGTTCAA	NA	False	NA	NA	False	NA	NA	NA	144930092	144878771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_144879164_144891370_144891491_144929956
76603	chr9	+	696	8	NNC	ENSMUSG00000041440.19	novel	2815	16	NA	NA	16010	17636	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	24.0560569826192	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGACACGGGCACCGCCA	NA	False	NA	NA	False	NA	NA	NA	96022282	96037509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_96022383_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445
76606	chr9	+	331	1	Antisense	novelGene_ENSMUSG00000050621.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGCAAGGGATAAGTTCT	NA	False	NA	NA	False	NA	NA	NA	114811471	114811802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_114811500_114811800
76607	chr8	-	172	1	Intergenic	novelGene_1739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	634	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTCGTCTGTTCATGAT	8951	False	NA	NA	False	NA	NA	NA	111249187	111249015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111249000_111249200
76608	chr15	+	282	1	FSM	ENSMUSG00000022240.11	ENSMUST00000228827.2	2014	1	1923	-191	1923	191	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAATAAATTACAATTG	687	False	NA	NA	False	NA	NA	NA	31028464	31028746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_31028500_31028700
76609	chr15	+	777	1	ISM	ENSMUSG00000022240.11	ENSMUST00000081728.7	5944	23	855956	16	2153	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAACAAAAGAAAT	917	False	NA	NA	False	NA	NA	NA	31028694	31029471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_31028700_31029500
76610	chr2	+	165	1	Intergenic	novelGene_2737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTTAAAATCTTAAAAA	7653	False	NA	NA	False	NA	NA	NA	152250995	152251160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_152251000_152251200
76613	chr2	-	500	1	Intergenic	novelGene_2830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATTCACGAAGAAAGATT	NA	False	NA	NA	False	NA	NA	NA	174108738	174108238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_174108200_174108700
76614	chr2	-	673	3	Intergenic	novelGene_2714	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAAGTTGTTCCTGAATG	NA	False	NA	NA	False	NA	NA	NA	135408112	135403133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_135403260_135407115_135407199_135407648
76616	chr7	+	832	2	ISM	ENSMUSG00000015957.13	ENSMUST00000167303.8	1792	5	11453	29	2492	-29	3prime_fragment	FALSE	canonical	3	27	junction_1	0	7	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAAAATACAGCTTTTTC	5439	False	NA	NA	False	NA	NA	NA	98499504	98502929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_98499727_98502319
76617	chr5	-	1024	2	NNC	ENSMUSG00000097279.2	novel	1334	3	NA	NA	-1188	-24665	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGGAAGTAGCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	8849711	8848241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_8848288_8848733
76618	chr11	+	1169	1	FSM	ENSMUSG00000039321.2	ENSMUST00000039044.2	1703	1	469	65	469	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCTGAAGTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	121051565	121052734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_121051600_121052700
76621	chr2	-	971	1	FSM	ENSMUSG00000074807.4	ENSMUST00000099385.3	1133	1	502	-340	502	340	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTGAATTTGATTTTTT	9944	False	NA	NA	False	NA	NA	NA	128809143	128808172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_128808200_128809100
76622	chr2	+	444	2	Antisense	novelGene_ENSMUSG00000044033.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	11	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGATATGCGGCATTGC	NA	False	NA	NA	False	NA	NA	NA	76952531	76954804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_76952661_76954489
76625	chr7	+	487	5	FSM	ENSMUSG00000019738.16	ENSMUST00000108192.2	508	5	-5	26	-5	-22	multi-exon	FALSE	canonical	3	1146	junction_4	46.0672063403024	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTGTAATAAATGCCAGT	NA	False	NA	NA	False	NA	NA	NA	29931751	29932785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
76626	chr6	+	164	1	Intergenic	novelGene_4188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGTGTAGCAAGAGATGG	NA	False	NA	NA	False	NA	NA	NA	72791092	72791256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_72791100_72791300
76627	ERCC-00160	+	727	1	FSM	ERCC-00160A	DQ883658	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00160_+_0_700
76628	chr4	+	496	3	FSM	ENSMUSG00000028700.15	ENSMUST00000144311.2	557	3	28	33	28	-33	multi-exon	FALSE	canonical	3	7	junction_2	0.5	50	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAATAAAATAAAACAA	NA	False	NA	NA	False	NA	NA	NA	115981064	115996014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_115981314_115994890_115995026_115995902
76630	chr16	-	832	1	ISM	ENSMUSG00000022892.12	ENSMUST00000227723.2	8167	18	218475	4775	8090	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAAATAACTCCAGGC	NA	False	NA	NA	False	NA	NA	NA	84752179	84751347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_84751300_84752200
76632	chr7	-	833	1	ISM	ENSMUSG00000048583.17	ENSMUST00000000033.12	3708	4	5887	11	1421	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTATTTATTGAGTT	NA	False	NA	NA	False	NA	NA	NA	142205346	142204513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_142204500_142205300
76633	chr19	+	604	4	FSM	ENSMUSG00000024784.14	ENSMUST00000025698.14	609	4	0	5	0	-5	multi-exon	FALSE	canonical	2	5	junction_1	2.05480466765633	29	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTCGCTCTTTATT	239	False	NA	NA	False	NA	NA	NA	6276409	6277793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6276456_6276807_6276918_6277000_6277186_6277530
76634	chr5	-	347	1	ISM	ENSMUSG00000029596.14	ENSMUST00000052258.14	1225	8	14212	19	8809	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCGTGTGGCTCCCTGGG	NA	False	NA	NA	False	NA	NA	NA	120596616	120596269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_120596300_120596600
76636	chr4	-	324	1	Genic_Genomic	ENSMUSG00000086342.2	novel	NA	NA	NA	NA	-55	-1822	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGCTGGTATTGAACAGAA	NA	False	NA	NA	False	NA	NA	NA	124978795	124978471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_124978500_124978800
76637	chr14	-	477	3	FSM	ENSMUSG00000075571.9	ENSMUST00000111209.2	721	3	38	206	38	-206	multi-exon	FALSE	canonical	2	4	junction_2	0.5	12	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTATTATACTAATGATAC	NA	False	NA	NA	False	NA	NA	NA	63287366	63272127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63272277_63273378_63273551_63287210
76638	chr14	-	675	3	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-5941	-2821	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	1	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCGGCCGCCACGGCCC	NA	False	NA	NA	False	NA	NA	NA	47814047	47805641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47806089_47809102_47809272_47813988
76639	chr2	-	155	1	Intergenic	novelGene_2645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCAGAGCAAGCGGGGC	NA	False	NA	NA	False	NA	NA	NA	69840258	69840103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_69840100_69840300
76640	chr7	-	561	1	ISM	ENSMUSG00000040390.14	ENSMUST00000036453.14	3682	10	17639	20	8152	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCCCTGCCCCCTACCAA	4971	False	NA	NA	False	NA	NA	NA	27356380	27355819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_27355800_27356400
76641	chr1	+	610	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3250	-9	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	24.4176620957499	707	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTTAAACTTCATGCCTC	NA	False	NA	NA	False	NA	NA	NA	171049372	171053933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171049548_171052855_171052936_171053234_171053368_171053711
76642	chr19	+	1177	1	Intergenic	novelGene_1246	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATCATAAATTATGAAGT	NA	False	NA	NA	False	NA	NA	NA	31051535	31052712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_31051500_31052700
76643	chr13	+	793	1	Intergenic	novelGene_1344	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAACTTTTGCCATTGGGG	1398	False	NA	NA	False	NA	NA	NA	36487541	36488334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_36487500_36488300
76644	chr2	+	379	2	Antisense	novelGene_ENSMUSG00000006800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	115	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACGGCATATGTGTGC	1001	False	NA	NA	False	NA	NA	NA	165984376	165989662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165984500_165989406
76645	chr10	-	1102	8	FSM	ENSMUSG00000014329.15	ENSMUST00000144740.2	3053	8	600	1351	600	-1351	multi-exon	FALSE	canonical	2	6	junction_2	2.79941684889506	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCGCAAGCAGAACAAATCA	NA	False	NA	NA	False	NA	NA	NA	70783719	70771682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_70771819_70776315_70776471_70776829_70776870_70779199_70779366_70781054_70781212_70782374_70782508_70782634_70782832_70783601
76646	chr1	+	1306	6	ISM	ENSMUSG00000037408.11	ENSMUST00000153128.2	4547	7	761	3109	385	-3109	5prime_fragment	FALSE	canonical	0	0	junction_2	1.2	3	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACCGCAACACAGACTTGA	4601	False	NA	NA	False	NA	NA	NA	36511461	36544736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_36512167_36537070_36537215_36537475_36537611_36538491_36538662_36538965_36539063_36544681
76647	chr12	-	874	8	ISM	ENSMUSG00000021182.17	ENSMUST00000085096.10	6313	30	130	55065	56	1576	5prime_fragment	FALSE	canonical	3	80	junction_5	4.32364170012044	5	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTCTTCTCGTGTCGT	NA	False	NA	NA	False	NA	NA	NA	100995112	100934023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_100934252_100934512_100934654_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
76649	chr7	-	1271	1	Intergenic	novelGene_2881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAGCAGGGGCTTGAGT	NA	False	NA	NA	False	NA	NA	NA	12568630	12567359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_12567400_12568600
76651	chr6	-	142	1	Intergenic	novelGene_4133	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30188623	30188481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_30188500_30188600
76652	chr17	+	771	3	Antisense	novelGene_ENSMUSG00000036026.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAGCCTTTGAAACC	NA	False	NA	NA	False	NA	NA	NA	45971732	45973075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45971927_45972330_45972468_45972635
76653	chr7	-	606	2	Intergenic	novelGene_3053	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_1	0	51	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATTGATGTTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	140640773	140638374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_140638918_140640710
76655	chr17	-	939	1	ISM	ENSMUSG00000048027.10	ENSMUST00000170578.3	5698	3	18817	3643	-1016	-2342	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTACCTGGTTAGT	NA	False	NA	NA	False	NA	NA	NA	16028031	16027092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_16027100_16028000
76656	chr14	-	623	2	ISM	ENSMUSG00000096001.3	ENSMUST00000179488.3	754	3	2648	7	2648	-7	3prime_fragment	FALSE	canonical	3	7	junction_1	0	13	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACACTATGCCTGGAGCA	NA	False	NA	NA	False	NA	NA	NA	36829410	36824105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_36824649_36829330
76657	chrX	+	722	1	ISM	ENSMUSG00000035491.6	ENSMUST00000048382.5	835	2	19856	32	19856	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAATAAATTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	84313140	84313862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_84313100_84313900
76659	chr18	+	932	1	Intergenic	novelGene_4512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCACTTCAATAGTCTAA	NA	False	NA	NA	False	NA	NA	NA	14809315	14810247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_14809300_14810200
76661	chr19	+	525	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5994	-12	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	19.7709101684492	2	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAAAGCTTCAATAAACA	NA	False	NA	NA	False	NA	NA	NA	29681327	29685814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_29681401_29682019_29682117_29684207_29684322_29685573
76663	chr9	+	165	1	Intergenic	novelGene_1107	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAAAGATGCATCG	765	False	NA	NA	False	NA	NA	NA	70574376	70574541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_70574400_70574500
76664	chr15	+	1240	1	NIC	ENSMUSG00000046897.18	novel	4241	8	NA	NA	133	770	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGGTTTTTGTTGTTGTT	3786	False	NA	NA	False	NA	NA	NA	102116829	102118069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102116800_102118100
76668	chr11	-	877	4	ISM	ENSMUSG00000020713.7	ENSMUST00000103071.4	862	5	171	-3	171	3	3prime_fragment	FALSE	canonical	1	2	junction_1	0	7	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCCGGCTAGAGGTCTTT	7228	False	NA	NA	False	NA	NA	NA	106192520	106191093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_106191393_106191590_106191753_106191920_106192038_106192221
76669	chr8	+	158	1	Intergenic	novelGene_1772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCTTTTTAGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	120303071	120303229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_120303100_120303200
76670	chr5	+	550	2	NNC	ENSMUSG00000063646.19	novel	849	3	NA	NA	0	-45926	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	0	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGCTCCTGAGTTATC	NA	False	NA	NA	False	NA	NA	NA	37185678	37196728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_37185944_37196443
76672	chr13	+	163	1	Intergenic	novelGene_1367	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTCTTTTTTAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	51672613	51672776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_51672600_51672800
76674	chr7	+	593	2	Genic_Genomic	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-568	2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGATCCTCATCTGTGT	2312	False	NA	NA	False	NA	NA	NA	5064573	5082934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_5065094_5082861
76677	chr1	+	527	3	NNC	ENSMUSG00000097893.9	novel	661	4	NA	NA	3868	-169	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	2	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTCATGATTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	9822718	9841151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_9822790_9834574_9834776_9840896
76678	chr15	+	806	1	NIC	ENSMUSG00000081534.4	novel	2536	3	NA	NA	4	-4726	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTATTATCATCATTTAAT	NA	False	NA	NA	False	NA	NA	NA	97682312	97683118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_97682300_97683100
76680	chr14	-	755	4	ISM	ENSMUSG00000091792.2	ENSMUST00000168673.2	898	5	1095	8	1095	-8	3prime_fragment	FALSE	canonical	0	0	junction_1	0.471404520791032	10	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATTATTATTAACGTTA	NA	False	NA	NA	False	NA	NA	NA	42011653	42007355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_42007696_42009453_42009639_42010298_42010431_42011555
76681	chr18	-	800	1	Antisense	novelGene_ENSMUSG00000024384.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATAAGGTAATAAAGAT	NA	False	NA	NA	False	NA	NA	NA	32201214	32200414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32200400_32201200
76682	chr5	-	464	2	ISM	ENSMUSG00000085042.9	ENSMUST00000154060.2	594	3	417	9	51	-9	3prime_fragment	FALSE	canonical	3	37	junction_1	0	116	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGTACTCCTGGACCC	NA	False	NA	NA	False	NA	NA	NA	135041591	135040984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_135041405_135041547
76683	chr2	+	570	1	ISM	ENSMUSG00000040794.6	ENSMUST00000111466.3	1290	2	4082	14	4082	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	42	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGCCCTGTGTCATGA	NA	False	NA	NA	False	NA	NA	NA	90720285	90720855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_90720300_90720900
76684	chr14	+	1524	3	NNC	ENSMUSG00000035067.10	novel	2963	3	NA	NA	-11336	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1	2	37	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAACCTTTCTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	64021131	64057474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_64021259_64035655_64035853_64056274
76689	chr16	-	463	1	Intergenic	novelGene_3592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGACTCGAAAAAAAAAAAAA	9486	False	NA	NA	False	NA	NA	NA	11140649	11140186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_11140200_11140600
76690	chr6	+	342	1	Intergenic	novelGene_4268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTTGGCTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	143103190	143103532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_143103200_143103500
76692	chr11	-	662	2	FSM	ENSMUSG00000085379.2	ENSMUST00000131221.2	3201	2	13	2526	13	-2526	multi-exon	FALSE	canonical	0	0	junction_1	0	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCATGTGTCCTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	58868863	58859099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_58859406_58868507
76693	chr15	-	971	1	NIC	ENSMUSG00000009575.15	novel	8803	5	NA	NA	48	-25716	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATTTGGTTTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	103148195	103147224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_103147200_103148200
76694	chr1	+	971	2	FSM	ENSMUSG00000033227.8	ENSMUST00000189544.2	920	2	174	-225	174	225	multi-exon	FALSE	canonical	1	2	junction_1	0	7	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCTTGGCCCCCCAGAT	4701	False	NA	NA	False	NA	NA	NA	74821771	74823986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74822054_74823297
76695	chr4	+	416	1	Antisense	novelGene_ENSMUSG00000049969.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAATTTTCTTTTTAGCCT	NA	False	NA	NA	False	NA	NA	NA	11007910	11008326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_11007900_11008300
76697	chr4	-	884	4	Antisense	novelGene_ENSMUSG00000023153.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCTGAGCAGGGCGGGAC	6585	False	NA	NA	False	NA	NA	NA	155555310	155553743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_155553804_155553900_155553960_155554442_155554625_155554727
76698	chr10	+	588	2	ISM	ENSMUSG00000100550.3	ENSMUST00000220058.2	727	5	3148	-2	3148	2	3prime_fragment	FALSE	canonical	3	23	junction_1	0	9	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTGGAGGTTGGGAAGT	NA	False	NA	NA	False	NA	NA	NA	95193897	95199073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_95194221_95198808
76699	chr16	+	682	1	NIC	ENSMUSG00000097576.3	novel	921	2	NA	NA	398	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	17	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAAAGGAGGTGTTCAC	NA	False	NA	NA	False	NA	NA	NA	38273149	38273831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38273100_38273800
76701	chr2	+	492	1	Intergenic	novelGene_2735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGTTAGTGATTAGTTTT	8173	False	NA	NA	False	NA	NA	NA	152119007	152119499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_152119000_152119500
76703	chr6	-	444	7	ISM	ENSMUSG00000004988.10	ENSMUST00000204214.3	550	9	1431	3	49	-3	3prime_fragment	FALSE	canonical	1	3	junction_3	4.6696419087073	129	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTTTTGTGGTCTTGTG	3950	False	NA	NA	False	NA	NA	NA	117912865	117910523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814
76704	chr8	-	586	1	Intergenic	novelGene_1693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAAAGAGCAGGCTTCC	NA	False	NA	NA	False	NA	NA	NA	89742246	89741660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89741700_89742200
76705	chr10	-	191	1	Intergenic	novelGene_3462	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTATTTTTAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	67125749	67125558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_67125600_67125700
76706	chr6	+	707	3	FSM	ENSMUSG00000087150.8	ENSMUST00000131176.8	2299	3	64	1528	-24	-1449	multi-exon	FALSE	canonical	1	2	junction_1	1.5	16	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACACCCCTAAGCTCCTT	9380	False	NA	NA	False	NA	NA	NA	128969978	128983475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_128970070_128979208_128979314_128982964
76708	chr5	+	1386	1	NIC	ENSMUSG00000107385.4	novel	2764	5	NA	NA	18	-5525	mono-exon	FALSE	NA	NA	NA	NA	NA	1	91	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCGAGCATCTTCTCTT	8050	False	NA	NA	False	NA	NA	NA	67621263	67622649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_67621300_67622600
76711	chr11	+	539	2	FSM	ENSMUSG00000044034.12	ENSMUST00000106195.3	542	2	4	-1	4	1	multi-exon	FALSE	canonical	3	9	junction_1	0	49	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCTAAGGGTTGCTGGAG	1212	False	NA	NA	False	NA	NA	NA	120499306	120499920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120499566_120499640
76712	chr12	+	765	1	FSM	ENSMUSG00000070072.3	ENSMUST00000093564.3	124	1	103	-744	103	744	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCGTGTGCCTCATCTCA	4348	False	NA	NA	False	NA	NA	NA	109558251	109559016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109558300_109559000
76713	chr5	+	421	4	FSM	ENSMUSG00000070858.13	ENSMUST00000114383.8	511	4	85	5	21	-5	multi-exon	FALSE	canonical	3	25	junction_1	4.98887651569859	23	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGCCTGTGTCCTGTA	NA	False	NA	NA	False	NA	NA	NA	34140898	34142348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_34140984_34141100_34141241_34141395_34141485_34142241
76714	ERCC-00079	-	626	1	Antisense	novelGene_ERCC-00079A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	628	2	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_ERCC-00079_-_0_600
76715	chr7	-	657	3	FSM	ENSMUSG00000041309.18	ENSMUST00000106095.3	1299	3	621	21	621	-21	multi-exon	FALSE	canonical	3	81	junction_2	2	15	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCGGAGCCGTGGCTCC	NA	False	NA	NA	False	NA	NA	NA	139162085	139161156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139161605_139161796_139161970_139162049
76716	chr1	+	323	2	ISM	ENSMUSG00000097398.3	ENSMUST00000180596.2	358	3	214	-24	214	-3	3prime_fragment	FALSE	canonical	3	14	junction_1	0	28	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAACTTGGTCTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	88682889	88683455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_88683013_88683255
76717	chr8	-	512	3	NNC	ENSMUSG00000058056.17	novel	1325	10	NA	NA	-1780	-6670	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	55	13	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATCTTGTATCCACCTC	NA	False	NA	NA	False	NA	NA	NA	61988655	61984824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_61985096_61986387_61986610_61988636
76719	chr13	+	632	2	ISM	ENSMUSG00000034686.9	ENSMUST00000046533.9	1359	3	8094	6	8094	-6	3prime_fragment	FALSE	canonical	1	2	junction_1	0	19	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTACAAGCGGAGGGGGA	NA	False	NA	NA	False	NA	NA	NA	55620173	55620961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55620250_55620405
76721	chr1	+	429	2	ISM	ENSMUSG00000006576.17	ENSMUST00000027415.12	3926	23	11133	-179	5920	179	3prime_fragment	FALSE	canonical	3	18	junction_1	0	11	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTCCGTGTCTTGTGTCTG	9279	False	NA	NA	False	NA	NA	NA	75534272	75535713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_75534445_75535456
76724	chr19	+	984	1	NIC	ENSMUSG00000071650.7	novel	808	6	NA	NA	5	-6798	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGCTACATAAGTAGCCAT	1909	False	NA	NA	False	NA	NA	NA	8875480	8876464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8875500_8876500
76726	chr2	+	809	1	Intergenic	novelGene_2655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACCCCTCTCAAAAGC	NA	False	NA	NA	False	NA	NA	NA	73392736	73393545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_73392700_73393500
76727	chr13	-	325	2	NNC	ENSMUSG00000050876.10	novel	5325	5	NA	NA	-418	-5527	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTAGGTTGGGTTGAA	NA	False	NA	NA	False	NA	NA	NA	59858562	59858090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59858145_59858291
76728	SIRV10002	-	753	1	Antisense	novelGene_SIRV10002A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGAAACCTCACCTTGT	NA	False	NA	NA	False	NA	NA	NA	8609	7856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV10002_-_7900_8600
76729	chr10	-	167	1	Intergenic	novelGene_3505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	90964512	90964345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_90964300_90964500
76731	chr19	-	507	3	Intergenic	novelGene_1233	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	7.5	34	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTGTCCCTACAGTCA	NA	False	NA	NA	False	NA	NA	NA	23934095	23884650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_23885008_23885116_23885214_23934042
76732	chr7	-	250	1	Intergenic	novelGene_2870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGATTTCGAG	NA	False	NA	NA	False	NA	NA	NA	4795846	4795596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_4795600_4795800
76734	chr4	+	531	1	Intergenic	novelGene_1868	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAATTAAAAAAAGAAAAATT	NA	False	NA	NA	False	NA	NA	NA	62438367	62438898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_62438400_62438900
76735	chr2	+	871	5	NNC	ENSMUSG00000108976.2	novel	755	4	NA	NA	-128	128	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.6393596310755	8	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTAATGATGTGATCTGAT	5955	False	NA	NA	False	NA	NA	NA	181298698	181301388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181298721_181298860_181299016_181300412_181300689_181300785_181300939_181301123
76737	chr8	-	222	1	Intergenic	novelGene_1578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCATATACATAAAATAAATC	NA	False	NA	NA	False	NA	NA	NA	14906353	14906131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_14906100_14906400
76746	chr14	-	614	1	ISM	ENSMUSG00000048281.10	ENSMUST00000063169.10	1314	2	16118	1	16118	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCGTCTAGCTTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	62514294	62513680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_62513700_62514300
76747	chr2	+	822	1	Intergenic	novelGene_2724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAATTCTATACAATTATG	NA	False	NA	NA	False	NA	NA	NA	150085962	150086784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_150086000_150086800
76749	chr11	-	968	3	Antisense	novelGene_ENSMUSG00000063564.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGACATGATATTGAACAGA	NA	False	NA	NA	False	NA	NA	NA	51327737	51321717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_51322340_51322537_51322802_51327655
76750	chr1	+	496	2	FSM	ENSMUSG00000073478.7	ENSMUST00000139056.3	716	2	72	148	52	-148	multi-exon	FALSE	canonical	3	14	junction_1	0	141	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTTCAGTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	190956722	190957884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_190956740_190957405
76752	chr14	-	215	1	Intergenic	novelGene_574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	52548124	52547909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_52547900_52548100
76753	chr17	-	995	1	Intergenic	novelGene_280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAAAAGTTTTCATGA	NA	False	NA	NA	False	NA	NA	NA	66674842	66673847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66673800_66674800
76756	chr4	+	465	1	Intergenic	novelGene_1985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAGCAGCCAAGCAAG	NA	False	NA	NA	False	NA	NA	NA	137240338	137240803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_137240300_137240800
76758	chr17	-	379	3	Intergenic	novelGene_292	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_2	2	1	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCCCTCAGGTAATTCC	NA	False	NA	NA	False	NA	NA	NA	69296535	69288783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_69288890_69293963_69294134_69296432
76759	chr7	+	416	2	NNC	ENSMUSG00000030763.8	novel	1369	11	NA	NA	-35	-5252	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	0	200	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTGAACCTTGAGCAG	6863	False	NA	NA	False	NA	NA	NA	122977243	122995448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_122977479_122995267
76760	chr7	+	494	2	FSM	ENSMUSG00000040428.20	ENSMUST00000211348.2	476	2	33	-51	33	-15	multi-exon	FALSE	canonical	3	10	junction_1	0	123	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTATTCTCTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	45199345	45203638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45199390_45203188
76762	chr11	-	812	5	NIC	ENSMUSG00000020617.14	novel	919	5	NA	NA	-24	-9	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	1.22474487139159	27	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGCAAAACTTGTATGGTG	NA	False	NA	NA	False	NA	NA	NA	109704924	109682391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_109682621_109684931_109685106_109688103_109688238_109704384_109704573_109704837
76763	chr14	-	566	4	ISM	ENSMUSG00000097589.10	ENSMUST00000183079.8	535	5	-33	7076	-8	40	5prime_fragment	FALSE	canonical	2	7	junction_3	4.92160768674447	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTTTTTATTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	61886244	61869707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_61869933_61872973_61873041_61880808_61880905_61886066
76764	chr11	-	815	1	NIC	ENSMUSG00000049396.7	novel	3540	2	NA	NA	-30	346	mono-exon	FALSE	NA	NA	NA	NA	NA	10	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCCAGCTCTTTAGTGTG	NA	False	NA	NA	False	NA	NA	NA	76108373	76107558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_76107600_76108400
76767	chr2	-	242	1	ISM	ENSMUSG00000027175.11	ENSMUST00000132600.2	630	3	6965	10	1266	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAAATCTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	104535546	104535304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_104535300_104535500
76769	chr5	-	534	1	ISM	ENSMUSG00000032741.10	ENSMUST00000046426.10	4712	28	53983	4	53904	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCGGCTGCAGCCTTTGA	NA	False	NA	NA	False	NA	NA	NA	120672755	120672221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_120672200_120672800
76770	chr17	-	370	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	266	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	48.5	271	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATTGGTCTCAGTGTTCC	NA	False	NA	NA	False	NA	NA	NA	74834373	74826657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_74826911_74830509_74830574_74834320
76771	chr17	-	519	5	FSM	ENSMUSG00000024174.10	ENSMUST00000233301.2	1813	5	41	1253	-9	-1253	multi-exon	FALSE	canonical	3	16	junction_3	2.54950975679639	76	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTCAGGCATCAATTAT	NA	False	NA	NA	False	NA	NA	NA	56019587	56005346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
76772	chr11	-	616	4	ISM	ENSMUSG00000047342.18	ENSMUST00000145474.8	641	5	318	-7	-111	7	3prime_fragment	FALSE	canonical	3	31	junction_2	13.5973853695808	38	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTTCACTCTCCTCTC	NA	False	NA	NA	False	NA	NA	NA	62679917	62674334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_62674588_62675704_62675820_62678784_62678871_62679755
76773	chr7	+	154	1	Intergenic	novelGene_3044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAGATCTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	132143570	132143724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_132143600_132143700
76774	chr4	-	709	1	Antisense	novelGene_ENSMUSG00000028676.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATACACTTAGATTTTTA	NA	False	NA	NA	False	NA	NA	NA	135583181	135582472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_135582500_135583200
76775	chr16	-	707	1	Genic_Genomic	ENSMUSG00000043391.11	novel	NA	NA	NA	NA	15841	38	mono-exon	FALSE	NA	NA	NA	NA	NA	12	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGTAAACCCTTCAGCCTT	NA	False	NA	NA	False	NA	NA	NA	21496140	21495433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_21495400_21496100
76780	chr5	+	462	1	ISM	ENSMUSG00000029163.10	ENSMUST00000031055.8	3852	8	7399	15	880	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTCTACAAAACATAGCT	353	False	NA	NA	False	NA	NA	NA	31078144	31078606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_31078100_31078600
76781	chr19	-	538	1	Intergenic	novelGene_1217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTCTTGGTGCTCATC	NA	False	NA	NA	False	NA	NA	NA	21768583	21768045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_21768000_21768600
76782	chr12	-	323	2	NNC	ENSMUSG00000021238.12	novel	3399	12	NA	NA	13	-10107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGAAATGTGTGCATGTG	NA	False	NA	NA	False	NA	NA	NA	84497709	84496609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84496886_84497662
76784	chr3	+	1087	2	NNC	ENSMUSG00000105265.6	novel	2533	2	NA	NA	-785	-10081	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTAATTTTCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	34718606	34719922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34718668_34718896
76786	chr15	-	473	1	ISM	ENSMUSG00000045763.9	ENSMUST00000058845.9	1855	2	49993	22	49927	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	44	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGTTAAACAATTAAAAAG	1126	False	NA	NA	False	NA	NA	NA	25363857	25363384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_25363400_25363900
76787	chr5	-	456	1	ISM	ENSMUSG00000042589.19	ENSMUST00000111752.10	8784	23	190851	2179	7063	1671	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATCCGTCCACTCCACA	5291	False	NA	NA	False	NA	NA	NA	121997063	121996607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_121996600_121997100
76789	chr10	-	425	1	Antisense	novelGene_ENSMUSG00000064030.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCGCAAAGATCGGCGCAC	5609	False	NA	NA	False	NA	NA	NA	128584326	128583901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128583900_128584300
76790	chr6	+	375	1	ISM	ENSMUSG00000087626.2	ENSMUST00000133723.2	552	2	786	18	786	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACATCTTTTTAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	52150646	52151021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_52150600_52151000
76791	chr12	+	1028	1	Genic_Genomic	ENSMUSG00000020649.12	novel	NA	NA	NA	NA	-982	-1303	mono-exon	FALSE	NA	NA	NA	NA	NA	5	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGGATTCCAGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	24757257	24758285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_24757300_24758300
76793	chr13	+	1283	1	Intergenic	novelGene_1387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACTGGTGTGTTTATAGA	NA	False	NA	NA	False	NA	NA	NA	58363597	58364880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_58363600_58364900
76794	chr7	+	262	2	ISM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	1023	48	1023	0	3prime_fragment	FALSE	canonical	3	949	junction_1	0	4	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	6747	False	NA	NA	False	NA	NA	NA	29884641	29885455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_29884785_29885336
76795	chr5	+	732	5	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-27	55440	6	-2776	5prime_fragment	FALSE	canonical	3	110	junction_4	17.1955662890176	76	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTTGGGTTACCTTGGG	NA	False	NA	NA	False	NA	NA	NA	8848158	8860875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557
76796	chr1	-	413	5	NIC	ENSMUSG00000026632.18	novel	342	4	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	15.9216833280907	121	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAACATATGAATGCAT	NA	False	NA	NA	False	NA	NA	NA	190795101	190790104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_190790222_190791023_190791109_190792309_190792384_190793421_190793455_190794997
76799	chr7	+	512	1	ISM	ENSMUSG00000030409.17	ENSMUST00000032568.14	2761	15	9382	79	935	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTATTTATTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	18827155	18827667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_18827200_18827700
76801	chr18	+	889	1	Intergenic	novelGene_4578	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCGCCCCCCCCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	84558222	84559111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_84558200_84559100
76802	chr14	-	145	1	Intergenic	novelGene_577	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTCTTTAAAAAAAAAAAAAA	4425	False	NA	NA	False	NA	NA	NA	56128167	56128022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_56128000_56128200
76804	chr7	-	837	3	ISM	ENSMUSG00000008028.16	ENSMUST00000150886.2	820	5	10583	-192	10583	-2	intron_retention	FALSE	canonical	3	28	junction_2	2	22	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCATTTCTCTCGGCAAA	3676	False	NA	NA	False	NA	NA	NA	44012441	44009468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44009806_44010473_44010608_44012075
76808	chr15	-	167	1	Intergenic	novelGene_3366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	97317580	97317413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_97317400_97317600
76810	chr6	-	866	2	Intergenic	novelGene_4191	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	43	junction_1	0	4	12	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAGCCTCAACACAACTCC	3603	False	NA	NA	False	NA	NA	NA	82684852	82682514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_82683236_82684707
76814	chr5	+	177	1	Intergenic	novelGene_681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	194	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTTTAAAAAGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	31067426	31067603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_31067400_31067600
76815	chr19	-	1390	1	Antisense	novelGene_ENSMUSG00000025019.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	88	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCAATCTTGTAGCAGTA	NA	False	NA	NA	False	NA	NA	NA	41550298	41548908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41548900_41550300
76816	chr2	+	335	1	Intergenic	novelGene_2562	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCACTCATATATCCTT	NA	False	NA	NA	False	NA	NA	NA	10475635	10475970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_10475600_10476000
76817	chr9	+	1028	6	FSM	ENSMUSG00000000167.15	ENSMUST00000000171.15	1256	6	216	12	-13	-12	multi-exon	FALSE	canonical	1	1	junction_3	2.03960780543711	5	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGCATAAAAACAATTTAT	78	False	NA	NA	False	NA	NA	NA	50528836	50536285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_50528899_50529745_50529950_50531054_50531179_50532244_50532491_50532920_50533187_50536159
76818	chr10	+	927	6	Intergenic	novelGene_3555	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	1.85472369909914	12	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAATAAGCCTTTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	120847323	120865822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120847370_120847833_120847875_120859676_120859780_120861977_120862105_120864724_120864797_120865284
76819	chr18	+	363	2	NNC	ENSMUSG00000098702.2	novel	890	2	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	11	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTTCACTACACCCGAT	NA	False	NA	NA	False	NA	NA	NA	61859515	61868976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61859571_61868668
76821	chr13	+	254	1	FSM	ENSMUSG00000066407.4	ENSMUST00000085163.4	300	1	-18	64	-18	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGATATCCACTACTT	NA	False	NA	NA	False	NA	NA	NA	73465944	73466198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_73465900_73466200
76822	chr2	-	948	2	ISM	ENSMUSG00000084938.2	ENSMUST00000126549.2	1097	3	52649	74	52649	-74	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGGGATTACAGGGTGT	NA	False	NA	NA	False	NA	NA	NA	57019117	57017564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_57018390_57018994
76824	chr14	-	670	3	Antisense	novelGene_ENSMUSG00000022010.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	17	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATGGACTCGGAGATAT	NA	False	NA	NA	False	NA	NA	NA	76732469	76708761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76709172_76713353_76713543_76732398
76827	chr2	-	559	4	NNC	ENSMUSG00000040434.17	novel	2310	14	NA	NA	551	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.8174464598878	1	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCTAATTCTCTTATATAA	NA	False	NA	NA	False	NA	NA	NA	92196315	92195437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_92195562_92195653_92195841_92195971_92196168_92196263
76830	chr8	-	749	1	Intergenic	novelGene_1685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTAGGAAGTGCCCTCA	3223	False	NA	NA	False	NA	NA	NA	86577446	86576697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_86576700_86577400
76831	chr5	-	512	2	Intergenic	novelGene_822	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	23	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCTTAACAGATATACAAAT	5645	False	NA	NA	False	NA	NA	NA	113799786	113797301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_113797629_113799601
76832	chrX	+	537	2	FSM	ENSMUSG00000059690.2	ENSMUST00000075654.2	525	2	-19	7	-19	-7	multi-exon	FALSE	canonical	3	3	junction_1	0	26	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGTGAATGCCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	68988886	68989577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_68989057_68989210
76837	chr9	+	274	3	NNC	ENSMUSG00000009927.10	novel	577	4	NA	NA	0	48	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5616.5	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGGTTCCTTGGCCAGGGC	NA	False	NA	NA	False	NA	NA	NA	44318994	44320120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44319055_44319284_44319361_44319982
76838	chr11	-	503	3	Genic_Genomic	ENSMUSG00002076964.1	novel	136	1	NA	NA	-1	1438	multi-exon	FALSE	canonical	0	0	junction_2	0.5	8	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTGGCAGAATAAATCT	NA	False	NA	NA	False	NA	NA	NA	96091138	96089563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_96089976_96090141_96090197_96091102
76839	chr6	+	792	1	FSM	ENSMUSG00000107402.2	ENSMUST00000203932.2	3479	1	-18	2705	-18	-2705	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATATCGTGACTTTGAGC	4222	False	NA	NA	False	NA	NA	NA	148113732	148114524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148113700_148114500
76846	chr2	-	366	1	NIC	ENSMUSG00000026987.17	novel	693	3	NA	NA	2195	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATTCCTTTAATTGAC	65	False	NA	NA	False	NA	NA	NA	60037308	60036942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_60036900_60037300
76847	chr2	+	703	1	Intergenic	novelGene_2555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAACCAAACCAAAAAAAA	7742	False	NA	NA	False	NA	NA	NA	5002213	5002916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_5002200_5002900
76852	chr4	-	959	1	Antisense	novelGene_ENSMUSG00000028289.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCCCTGTAAAGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	28967497	28966538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_28966500_28967500
76857	chr1	+	561	2	FSM	ENSMUSG00000026630.10	ENSMUST00000191621.2	815	2	273	-19	273	-15	multi-exon	FALSE	canonical	2	4	junction_1	0	14	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGATAGTTACCTAATGT	NA	False	NA	NA	False	NA	NA	NA	190832946	190841125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_190833030_190840647
76859	chrX	+	1145	1	FSM	ENSMUSG00000052364.5	ENSMUST00000064196.5	2583	1	1435	3	1435	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCGTTGTCTCATAAT	NA	False	NA	NA	False	NA	NA	NA	8760055	8761200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_8760100_8761200
76860	chr9	-	293	1	Genic_Genomic	ENSMUSG00000032112.11	novel	NA	NA	NA	NA	-145	-1034	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTAAAGCAATGGGGGCC	1328	False	NA	NA	False	NA	NA	NA	44319042	44318749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_44318700_44319000
76862	chr5	+	696	2	Antisense	novelGene_ENSMUSG00000107155.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGTTGTCATAAAGACT	NA	False	NA	NA	False	NA	NA	NA	66502533	66503967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_66502590_66503327
76864	chr15	+	791	1	FSM	ENSMUSG00000115810.2	ENSMUST00000226643.2	799	1	8	0	8	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGCCATATTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	73295167	73295958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_73295200_73296000
76865	chr5	-	478	2	Intergenic	novelGene_824	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	115	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGTATGTGTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	114623948	114623310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_114623687_114623846
76868	SIRV3	+	295	2	ISM	SIRV3A	SIRV305	436	3	629	0	629	0	3prime_fragment	FALSE	canonical	3	1609	junction_1	0	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4632	6718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV3_+_4780_6570
76869	chr1	+	916	7	NNC	ENSMUSG00000042671.13	novel	5614	6	NA	NA	358	22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.69967317119759	5	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGGTAGAAGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	153537184	153568753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_153537274_153541581_153541663_153543570_153543700_153546528_153546631_153547499_153547565_153566643_153566811_153568470
76870	chr11	+	577	2	ISM	ENSMUSG00000110344.2	ENSMUST00000134929.8	2031	4	61940	20	61940	-20	3prime_fragment	FALSE	canonical	3	25	junction_1	0	7	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACCACCTCAGCTGA	NA	False	NA	NA	False	NA	NA	NA	90140449	90142061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_90140562_90141596
76871	chr16	-	648	1	Antisense	novelGene_ENSMUSG00000103149.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACGCCAGGCGGCGCTTGT	NA	False	NA	NA	False	NA	NA	NA	17740578	17739930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_17739900_17740600
76874	chr13	-	767	1	NIC	ENSMUSG00000021377.16	novel	2556	11	NA	NA	-2500	1315	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTACTTTTGTAACTACT	NA	False	NA	NA	False	NA	NA	NA	47254414	47253647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_47253600_47254400
76876	chr10	+	394	1	Intergenic	novelGene_3536	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTCCTATTGCTGTG	260	False	NA	NA	False	NA	NA	NA	117248246	117248640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_117248200_117248600
76877	chr18	+	553	1	Intergenic	novelGene_4560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTGTAAATTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	67598030	67598583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_67598000_67598600
76878	chr14	+	644	3	NNC	ENSMUSG00000090216.2	novel	503	2	NA	NA	-3967	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.5	26	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATGAGTGTATAGTTT	NA	False	NA	NA	False	NA	NA	NA	72823224	72840807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_72823328_72827153_72827269_72840381
76879	chr7	-	370	3	NNC	ENSMUSG00000037029.9	novel	585	3	NA	NA	6487	1875	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGCTCACTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	29862629	29858818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29858943_29859455_29859583_29862510
76880	chr7	+	457	4	FSM	ENSMUSG00000002781.20	ENSMUST00000209580.2	978	4	0	521	0	-521	multi-exon	FALSE	canonical	0	0	junction_2	20.3960780543711	60	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCGACAGGGAGACCCTG	5635	False	NA	NA	False	NA	NA	NA	45546507	45556360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45546526_45546858_45547174_45549055_45549161_45556341
76881	chr12	+	492	2	FSM	ENSMUSG00000043319.6	ENSMUST00000053611.5	458	2	-31	-3	-31	3	multi-exon	FALSE	canonical	1	2	junction_1	0	51	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTAGTATTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	102865543	102866788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_102865751_102866503
76883	chr14	-	165	1	Intergenic	novelGene_593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTAAAAAAATACATCAC	NA	False	NA	NA	False	NA	NA	NA	64869046	64868881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_64868900_64869000
76884	chr1	-	1170	1	Genic_Genomic	ENSMUSG00000026409.15	novel	NA	NA	NA	NA	-102	-8591	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTGGAGATTCAGGAACG	2393	False	NA	NA	False	NA	NA	NA	130645077	130643907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_130643900_130645100
76885	chr4	+	561	4	ISM	ENSMUSG00000059810.19	ENSMUST00000098031.10	2072	18	-127	50722	-127	-17199	5prime_fragment	FALSE	canonical	3	86	junction_2	7.25718035235908	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGATGCCTTTGTTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	62501710	62524954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743
76886	chr8	-	731	3	Antisense	novelGene_ENSMUSG00000055148.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	74	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGTGGCCCGGCCCACC	NA	False	NA	NA	False	NA	NA	NA	73075160	73072907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_73072955_73073975_73074084_73074584
76887	chr14	-	493	5	ISM	ENSMUSG00000037580.11	ENSMUST00000089959.7	2775	6	20171	1741	-7370	-1741	3prime_fragment	FALSE	canonical	3	47	junction_1	4.9749371855331	8	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTAAGGGTGAGCTTCC	NA	False	NA	NA	False	NA	NA	NA	47406699	47393092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_47393382_47394865_47394951_47396319_47396352_47403932_47403989_47406668
76890	chr11	+	948	1	Intergenic	novelGene_2444	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGGGGTCAGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	88242352	88243300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_88242400_88243300
76891	chr17	+	949	1	Intergenic	novelGene_297	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGCTTTGGTATAAACTT	NA	False	NA	NA	False	NA	NA	NA	80242757	80243706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_80242800_80243700
76892	chr9	-	619	6	NNC	ENSMUSG00000001366.15	novel	2155	13	NA	NA	-3085	1146	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	23.1982757979984	1	17	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTCAACAAACTCATCTGG	NA	False	NA	NA	False	NA	NA	NA	77998003	77991833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_77997887
76893	chr12	+	597	2	FSM	ENSMUSG00000097391.9	ENSMUST00000182300.2	694	2	80	17	80	-14	multi-exon	FALSE	canonical	3	58	junction_1	0	50	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTCATATAATGTAAATAT	4869	False	NA	NA	False	NA	NA	NA	109714477	109715875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109714728_109715528
76894	SIRV10003	-	735	1	Antisense	novelGene_SIRV10003A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCTCGACTAACCTTTAA	NA	False	NA	NA	False	NA	NA	NA	756	21	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV10003_-_0_800
76895	chr8	+	794	9	NNC	ENSMUSG00000033763.15	novel	4717	14	NA	NA	-178	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	35.5096817783545	2	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCCTTCGCCCATGCC	NA	False	NA	NA	False	NA	NA	NA	111452870	111458771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111452888_111453006_111453081_111453744_111453830_111453935_111454028_111454108_111454184_111455354_111455518_111455801_111455910_111456654_111456753_111458689
76897	chr18	+	594	1	ISM	ENSMUSG00000117840.2	ENSMUST00000236587.2	835	2	14399	68	14399	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	13	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAAGACACTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	36009702	36010296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_36009700_36010300
76898	chr13	+	486	2	FSM	ENSMUSG00000085896.3	ENSMUST00000154615.3	487	2	-3	4	-3	-4	multi-exon	FALSE	canonical	1	1	junction_1	0	26	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATTATGGGTGAGAGTCA	NA	False	NA	NA	False	NA	NA	NA	55061044	55062288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55061126_55061883
76900	chr17	-	670	2	Antisense	novelGene_ENSMUSG00000071037.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTGTGTATGTAAATTC	NA	False	NA	NA	False	NA	NA	NA	85469798	85466390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_85466943_85469680
76901	chr3	+	573	5	FSM	ENSMUSG00000074604.10	ENSMUST00000099106.10	603	5	7	23	7	-18	multi-exon	FALSE	canonical	1	1	junction_1	6.68954408012983	28	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAATAAAACTTTTAAAAC	8632	False	NA	NA	False	NA	NA	NA	51568606	51590073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_51568728_51571931_51572032_51584985_51585057_51589217_51589300_51589874
76902	chr11	-	704	1	Intergenic	novelGene_2192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTTTTTTGCAAACTAT	5514	False	NA	NA	False	NA	NA	NA	3152266	3151562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_3151600_3152300
76903	chr12	+	829	1	ISM	ENSMUSG00000020583.5	ENSMUST00000020899.5	3014	8	22725	546	22725	-546	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTACATTAACGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	9020653	9021482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_9020700_9021500
76904	chr9	-	161	1	Intergenic	novelGene_1126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATCTTTTAAAAAACAAA	4379	False	NA	NA	False	NA	NA	NA	88375874	88375713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_88375700_88375900
76906	chr17	-	569	1	NIC	ENSMUSG00000097077.2	novel	1960	3	NA	NA	37	-4005	mono-exon	FALSE	NA	NA	NA	NA	NA	41	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTCTGGTGTTCCTTCTTC	4912	False	NA	NA	False	NA	NA	NA	56266344	56265775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56265800_56266300
76907	chr18	+	264	1	FSM	ENSMUSG00000036904.7	ENSMUST00000041080.7	5974	1	3377	2333	3377	-2333	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTTAGCAAAGTAAATGTC	2569	False	NA	NA	False	NA	NA	NA	9215539	9215803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_9215500_9215800
76908	chr11	+	407	2	Intergenic	novelGene_2377	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	18	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACGGTGTTTCTAAGGG	NA	False	NA	NA	False	NA	NA	NA	60997269	60999122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_60997355_60998800
76909	chr5	+	163	1	Intergenic	novelGene_849	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	8917	False	NA	NA	False	NA	NA	NA	121761974	121762137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_121762000_121762100
76910	chr8	+	1022	3	FSM	ENSMUSG00000074151.14	ENSMUST00000212382.2	346	3	-169	-507	-169	283	multi-exon	FALSE	canonical	0	0	junction_1	0	2	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTCTAATCTGGATTGA	NA	False	NA	NA	False	NA	NA	NA	95160814	95197143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95161062_95172685_95172762_95196444
76912	chr8	-	860	1	Intergenic	novelGene_1770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTCACATCCACCATCCAA	NA	False	NA	NA	False	NA	NA	NA	118516969	118516109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_118516100_118517000
76913	chr5	+	418	1	NIC	ENSMUSG00000041638.19	novel	8555	58	NA	NA	-6582	-11083	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGACACAAAGATTTAAAT	NA	False	NA	NA	False	NA	NA	NA	115737172	115737590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115737200_115737600
76915	chrX	+	908	1	ISM	ENSMUSG00000031221.8	ENSMUST00000144881.2	4695	2	4004	131	4004	-131	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCCATACTGCAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	99541964	99542872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_99542000_99542900
76918	chr6	+	927	1	FSM	ENSMUSG00000107698.2	ENSMUST00000203376.2	995	1	58	10	58	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTTGATTAAGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	88496052	88496979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88496100_88497000
76920	chr12	-	161	1	Intergenic	novelGene_4482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATACATTTTTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	111391485	111391324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_111391300_111391500
76922	chr9	+	1083	1	Antisense	novelGene_ENSMUSG00000011114.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAACTGCCTGATTTGCT	NA	False	NA	NA	False	NA	NA	NA	37568567	37569650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_37568600_37569600
76923	chr14	+	636	1	Antisense	novelGene_ENSMUSG00000021938.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACGTGGAACCACCTTGGC	NA	False	NA	NA	False	NA	NA	NA	57015700	57016336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_57015700_57016300
76924	chr2	-	469	1	Intergenic	novelGene_2615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAGCCTTCTACTGTA	NA	False	NA	NA	False	NA	NA	NA	34999449	34998980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_34999000_34999400
76925	chr13	+	547	3	FSM	ENSMUSG00000021643.16	ENSMUST00000022145.15	601	3	43	11	-30	-4	multi-exon	FALSE	canonical	3	69	junction_1	3	260	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAACATTATTGGTGAAT	NA	False	NA	NA	False	NA	NA	NA	100244562	100250735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_100244738_100245530_100245640_100250472
76929	chr19	+	1106	1	ISM	ENSMUSG00000004231.16	ENSMUST00000174490.9	4358	10	80302	399	76432	-399	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCGTGGACACCTCTCG	NA	False	NA	NA	False	NA	NA	NA	44824785	44825891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_44824800_44825900
76930	chr2	-	234	1	FSM	ENSMUSG00000051817.9	ENSMUST00000182625.2	4453	1	1105	3114	1088	-3111	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCAGCTGTTTACATAC	NA	False	NA	NA	False	NA	NA	NA	152238878	152238644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152238600_152238900
76933	chr11	-	898	1	ISM	ENSMUSG00000043993.7	ENSMUST00000139014.2	1588	2	322	564	322	-564	mono-exon	FALSE	NA	NA	NA	NA	NA	8	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCATGTTCTGTGTCCAC	NA	False	NA	NA	False	NA	NA	NA	120122089	120121191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120121200_120122100
76934	chr1	+	420	4	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	43	29290	43	-544	5prime_fragment	FALSE	canonical	3	363	junction_2	19.7033556081755	6	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGGTTAAAAGAGAAGCAT	4113	False	NA	NA	False	NA	NA	NA	87781051	87842922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821
76935	chr3	+	381	1	NIC	ENSMUSG00000028085.13	novel	1820	12	NA	NA	0	-1542	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTAAAGTAGGCATATTT	NA	False	NA	NA	False	NA	NA	NA	85481425	85481806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_85481400_85481800
76936	chr10	+	196	1	Antisense	novelGene_ENSMUSG00000025364.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGGGGTGCGGTGGGAG	3253	False	NA	NA	False	NA	NA	NA	128394518	128394714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128394500_128394700
76938	chr3	-	403	1	NIC	ENSMUSG00000028158.15	novel	2012	2	NA	NA	664	-1639	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAAACCCGGAGCGCAC	NA	False	NA	NA	False	NA	NA	NA	137850065	137849662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_137849700_137850100
76940	chr11	-	691	1	Antisense	novelGene_ENSMUSG00000020793.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGCGCTTGGCGCGCTGG	3	True	NA	NA	False	NA	NA	NA	116174759	116174068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_116174100_116174800
76941	chr9	-	367	1	Antisense	novelGene_ENSMUSG00000025898.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGGAACCACGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	3403965	3403598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_3403600_3404000
76944	chr17	-	450	2	ISM	ENSMUSG00000023935.11	ENSMUST00000233553.2	997	8	25135	11	25135	-11	3prime_fragment	FALSE	canonical	3	20	junction_1	0	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCTTAAAGAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	45760617	45756816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45757010_45760360
76947	chr10	+	790	2	FSM	ENSMUSG00000020225.11	ENSMUST00000135794.2	318	2	-551	79	442	-79	multi-exon	FALSE	canonical	2	3	junction_1	0	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCCAAGCGTGCACTCT	NA	False	NA	NA	False	NA	NA	NA	120038004	120039034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_120038613_120038852
76948	chr18	+	583	5	NNC	ENSMUSG00000085055.3	novel	2087	4	NA	NA	-208154	-20527	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGGAGGCTCCGCGGCCG	NA	False	NA	NA	False	NA	NA	NA	66216190	66424878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_66216322_66217812_66217944_66227068_66227121_66424201_66424284_66424691
76949	chr9	-	170	1	Intergenic	novelGene_1116	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	77906256	77906086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_77906100_77906300
76950	chr18	+	349	2	Intergenic	novelGene_4561	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	16	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTTATCCTGCTGCA	NA	False	NA	NA	False	NA	NA	NA	69966771	69967816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_69966838_69967533
76953	chr17	-	720	4	NIC	ENSMUSG00000043747.13	novel	461	6	NA	NA	-60	-18	intron_retention	FALSE	canonical	0	0	junction_2	0.816496580927726	6	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCATATGATTCCCCG	NA	False	NA	NA	False	NA	NA	NA	23925373	23924049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_23924210_23924502_23924545_23924766_23925152_23925240
76954	chr3	-	586	2	ISM	ENSMUSG00000074398.6	ENSMUST00000098839.3	659	3	145	95	145	-72	3prime_fragment	FALSE	canonical	2	2	junction_1	0	29	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCAACTCTGACCTCCC	NA	False	NA	NA	False	NA	NA	NA	96464986	96463175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_96463377_96464601
76956	chr16	-	309	2	Intergenic	novelGene_3627	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACTTGTCTTGGCTCCGT	NA	False	NA	NA	False	NA	NA	NA	29496687	29496219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_29496439_29496597
76957	chr15	-	735	5	NNC	ENSMUSG00000045350.16	novel	9320	8	NA	NA	-2860	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.433012701892219	4	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGGATATAAATTGCTAT	NA	False	NA	NA	False	NA	NA	NA	99832537	99816258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99816354_99825580_99825761_99827710_99827860_99831399_99831593_99832419
76958	chr14	+	331	2	Intergenic	novelGene_632	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	0	31	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGAGTCTTGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	99578579	99588764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_99578664_99588517
76959	chr19	+	439	2	FSM	ENSMUSG00000118100.2	ENSMUST00000235814.2	472	2	-7	40	-3	-40	multi-exon	FALSE	canonical	1	2	junction_1	0	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTAAGCCAGCCCCAATT	NA	False	NA	NA	False	NA	NA	NA	9877050	9879985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9877385_9879880
76960	chr16	-	474	3	Intergenic	novelGene_3600	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	2	14	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACACTGGAGCCTGGAC	NA	False	NA	NA	False	NA	NA	NA	17437182	17424574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_17424860_17435247_17435361_17437106
76961	chr19	-	817	1	Antisense	novelGene_ENSMUSG00000024891.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTATATATATACAAGGTTA	NA	False	NA	NA	False	NA	NA	NA	5073950	5073133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_5073100_5074000
76965	chr3	-	1014	2	NNC	ENSMUSG00000105676.2	novel	370	2	NA	NA	56	-375	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	12	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTACAACGATGGCATTT	NA	False	NA	NA	False	NA	NA	NA	137570079	137568724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_137569599_137569939
76969	chr8	-	978	4	NNC	ENSMUSG00000045333.16	novel	4334	6	NA	NA	108041	-35	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10.8012344973464	5	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTCAGCTCAATAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	88422410	88388474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_88389136_88413056_88413173_88414583_88414716_88422341
76970	chr15	+	747	4	FSM	ENSMUSG00000068600.11	ENSMUST00000096399.8	808	4	38	23	21	-23	multi-exon	FALSE	canonical	1	1	junction_1	0	11	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAATAAAGGCATCGTTT	NA	False	NA	NA	False	NA	NA	NA	74690957	74696262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_74691031_74692396_74692543_74693125_74693234_74695842
76971	chr16	-	711	3	NIC	ENSMUSG00000097313.3	novel	699	4	NA	NA	33	2	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	2	22	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATCAGGACAGCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	29765539	29726339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_29726669_29727207_29727322_29765271
76973	chr7	-	170	1	Intergenic	novelGene_2960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	309	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATTTTTTAAGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	44585472	44585302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_44585300_44585500
76974	chr2	-	520	1	FSM	ENSMUSG00000083240.4	ENSMUST00000118708.2	357	1	-68	-95	-68	95	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTATTTCTCTATGCTGTT	NA	False	NA	NA	False	NA	NA	NA	40017940	40017420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_40017400_40017900
76975	chr4	-	333	1	FSM	ENSMUSG00000065353.3	ENSMUST00000083419.3	205	1	-131	3	-131	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAAATTCCTAAGGC	NA	False	NA	NA	False	NA	NA	NA	132079968	132079635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132079600_132080000
76976	chr12	-	163	1	Intergenic	novelGene_4427	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAACCCAAAGCA	NA	False	NA	NA	False	NA	NA	NA	84294900	84294737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_84294700_84294900
76977	chr2	+	747	1	FSM	ENSMUSG00000086358.3	ENSMUST00000193685.2	2782	1	55	1980	55	-1980	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGCAGGCAACTTGCAT	4863	False	NA	NA	False	NA	NA	NA	13276467	13277214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_13276500_13277200
76978	chr3	-	414	2	Intergenic	novelGene_3180	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGAGGTGCTTGCTTGTT	4401	False	NA	NA	False	NA	NA	NA	116630606	116629767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_116629934_116630358
76979	chr11	+	929	1	Genic_Genomic	ENSMUSG00000050087.4	novel	NA	NA	NA	NA	1267	257	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGACTTCTGTTTGACC	NA	False	NA	NA	False	NA	NA	NA	50249854	50250783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_50249900_50250800
76980	chr1	-	279	1	Intergenic	novelGene_467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAAAGTGTATGTCCGAG	NA	False	NA	NA	False	NA	NA	NA	151187154	151186875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_151186900_151187200
76981	chr8	+	362	3	FSM	ENSMUSG00000043051.18	ENSMUST00000126111.2	804	3	368	74	368	-74	multi-exon	FALSE	canonical	3	16	junction_2	2	44	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCATAATGAGTTGTAATT	NA	False	NA	NA	False	NA	NA	NA	125815093	125829543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_125815188_125817111_125817182_125829345
76982	chr5	-	554	1	Intergenic	novelGene_973	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTATTATATATTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	148684978	148684424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_148684400_148685000
76983	chr12	-	644	7	NNC	ENSMUSG00000021176.7	novel	1122	7	NA	NA	20	-316	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	38.3478233483409	1	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTCAAAATGAGCCGGGT	NA	False	NA	NA	False	NA	NA	NA	99849660	99685296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_99685363_99755855_99755979_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
76984	chr15	-	493	1	ISM	ENSMUSG00000000552.11	ENSMUST00000229373.2	2348	8	19925	15	9108	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTCTGCCCTCTCGCCAA	NA	False	NA	NA	False	NA	NA	NA	103222829	103222336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_103222300_103222800
76987	chr7	-	414	3	FSM	ENSMUSG00000097162.3	ENSMUST00000209164.2	432	3	27	-9	-17	0	multi-exon	FALSE	canonical	3	5	junction_1	1.5	19	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCTATCTAAAATGTCTGA	NA	False	NA	NA	False	NA	NA	NA	89779165	89774029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_89774241_89776135_89776253_89779079
76988	chr4	+	503	4	NNC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	7	-2400	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	234.052700618187	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGTGGAGCAACCTAAAAA	5279	False	NA	NA	False	NA	NA	NA	108436657	108450236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108436777_108445872_108445979_108447849_108447975_108450083
76990	chr3	-	766	3	ISM	ENSMUSG00000049404.8	ENSMUST00000054825.5	1325	6	30258	-61	30258	61	3prime_fragment	FALSE	canonical	0	0	junction_2	1	5	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAACCTTATAAATAGCA	NA	False	NA	NA	False	NA	NA	NA	67392598	67386243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_67386820_67386898_67386962_67392471
76992	chr11	+	520	2	FSM	ENSMUSG00000085531.2	ENSMUST00000155883.2	520	2	-3	3	-3	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATCAGCTTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	55027866	55031016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_55027994_55030623
76993	chr8	-	259	1	ISM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	10563	3	187	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGGTACTGCTGATG	NA	False	NA	NA	False	NA	NA	NA	71050401	71050142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71050100_71050400
76994	chr6	+	164	1	Intergenic	novelGene_4134	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAGAAAAGTAG	NA	False	NA	NA	False	NA	NA	NA	30537400	30537564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_30537400_30537600
76995	chr7	+	358	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206882.2	391	2	31	2	-4	-2	multi-exon	FALSE	canonical	3	49	junction_1	0	203	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCATGTATTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	64042518	64061867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_64042592_64061582
76996	chr4	-	492	1	NIC	ENSMUSG00000028964.15	novel	882	7	NA	NA	42	-8654	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAGTCCTGATGTGAGCA	5771	False	NA	NA	False	NA	NA	NA	150998852	150998360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_150998400_150998900
76997	chr18	-	369	3	Antisense	novelGene_ENSMUSG00000097738.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	20	junction_2	4.5	127	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTTCCTATATTTTC	NA	False	NA	NA	False	NA	NA	NA	82883958	82873436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_82873610_82875076_82875202_82883887
76998	chr6	+	285	4	NNC	ENSMUSG00000002416.14	novel	455	4	NA	NA	34	-11	at_least_one_novel_splicesite	FALSE	canonical	3	114	junction_2	1013.07134771227	5	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATTACAGACTTCATTA	NA	False	NA	NA	False	NA	NA	NA	39569555	39576345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_39569647_39573384_39573459_39575199_39575300_39576325
76999	chr18	-	814	2	ISM	ENSMUSG00000086287.2	ENSMUST00000132571.2	418	3	-33	58	-33	-58	intron_retention	FALSE	canonical	0	0	junction_1	0	2	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGATTGTTAAAAAGATGA	NA	False	NA	NA	False	NA	NA	NA	23885395	23883561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_23883617_23884636
77000	chr4	-	826	1	ISM	ENSMUSG00000073802.6	ENSMUST00000097981.6	1390	2	3903	12	3903	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTAAAGAAACAGTGAAGT	NA	False	NA	NA	False	NA	NA	NA	89225373	89224547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_89224500_89225400
77002	chr11	-	865	6	ISM	ENSMUSG00000057054.12	ENSMUST00000108542.8	1080	7	4233	91	4187	-83	3prime_fragment	FALSE	canonical	1	2	junction_5	4.1182520563948	1	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTACACTCGCAGCCGGGT	410	False	NA	NA	False	NA	NA	NA	70586748	70579277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689
77003	chr18	+	746	1	ISM	ENSMUSG00000005836.11	ENSMUST00000047762.10	3234	7	32410	10	25833	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTACAGTGAGATCCTTCC	753	False	NA	NA	False	NA	NA	NA	11084879	11085625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_11084900_11085600
77005	chr17	+	295	2	FSM	ENSMUSG00000093565.2	ENSMUST00000176921.2	298	2	3	0	3	0	multi-exon	TRUE	canonical	3	77	junction_1	0	690	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTTTCAGACGTTGTG	4767	False	NA	NA	False	NA	NA	NA	24747224	24747718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24747411_24747609
77006	chr2	+	179	1	Intergenic	novelGene_2656	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATTTCAATAGAATCAC	NA	False	NA	NA	False	NA	NA	NA	73723945	73724124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_73723900_73724100
77007	chr1	-	332	1	FSM	ENSMUSG00000100954.6	ENSMUST00000186597.2	2498	1	980	1186	-169	-1186	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGGTGAA	NA	False	NA	NA	False	NA	NA	NA	151220002	151219670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_151219700_151220000
77008	chr1	+	482	2	Intergenic	novelGene_453	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	11	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTGAACAGGGAATCATC	9757	False	NA	NA	False	NA	NA	NA	135118718	135122470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_135118956_135122225
77011	chr4	+	539	1	Antisense	novelGene_ENSMUSG00000091985.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGAGTATCTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	108493424	108493963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_108493400_108494000
77012	chr4	-	354	1	Antisense	novelGene_ENSMUSG00000046862.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCATGAATGAAAAAATAATA	NA	False	NA	NA	False	NA	NA	NA	143139117	143138763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_143138800_143139100
77015	chr1	-	278	1	Intergenic	novelGene_329	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGGGACTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	7158905	7158627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_7158600_7158900
77017	chr6	+	604	5	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26240	-9171	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	6.80073525436772	43	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTCTTGTTCTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	53821967	53835997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835502_53835591_53835823
77021	chr4	-	354	3	NNC	ENSMUSG00000028857.17	novel	587	4	NA	NA	1611	67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	383	1	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCCCTCAGGCAGTGTT	NA	False	NA	NA	False	NA	NA	NA	132995816	132994073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_132994233_132995506_132995621_132995735
77023	chr10	-	926	1	NIC	ENSMUSG00000097164.3	novel	6566	3	NA	NA	64	-16562	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGAATCACTGGAAAGTG	NA	False	NA	NA	False	NA	NA	NA	94524374	94523448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_94523400_94524400
77025	chrX	+	631	2	FSM	ENSMUSG00000048573.10	ENSMUST00000056754.4	666	2	9	26	9	-20	multi-exon	FALSE	canonical	0	0	junction_1	0	9	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTGAAAATAATAAGATGTG	NA	False	NA	NA	False	NA	NA	NA	152341597	152342399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_152341879_152342049
77026	chr11	-	717	2	Intergenic	novelGene_2437	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	2	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAAAAGTGAGTTCTCTG	NA	False	NA	NA	False	NA	NA	NA	85994756	85993936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_85994627_85994729
77031	chr4	-	824	2	FSM	ENSMUSG00000028701.5	ENSMUST00000030469.5	5742	2	0	4918	0	196	multi-exon	FALSE	canonical	3	8	junction_1	0	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCTTGTAAAAACTTTCC	NA	False	NA	NA	False	NA	NA	NA	116001806	115994520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_115995032_116001493
77032	chr1	-	586	3	FSM	ENSMUSG00000045658.17	ENSMUST00000176720.2	450	3	-140	4	48	-4	multi-exon	FALSE	canonical	3	16	junction_1	16	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATACTTGGCAGATTGC	522	False	NA	NA	False	NA	NA	NA	84262284	84058303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_84058520_84136952_84137100_84262061
77035	chr10	-	235	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	329	32	329	-29	multi-exon	FALSE	canonical	3	15147	junction_1	3128	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGGAAAAATAAAATGGAAG	NA	False	NA	NA	False	NA	NA	NA	128461964	128460434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128460506_128461075_128461207_128461931
77037	chr2	-	380	2	FSM	ENSMUSG00000074813.15	ENSMUST00000239199.2	1105	2	715	10	14	0	multi-exon	FALSE	canonical	3	13	junction_1	0	26	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCAATTGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	128271076	128214030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_128214348_128271013
77038	chr11	+	678	1	Intergenic	novelGene_2218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAATAAACAAGACATGGC	NA	False	NA	NA	False	NA	NA	NA	9076640	9077318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_9076600_9077300
77041	chr8	+	819	4	Intergenic	novelGene_1677	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_3	4.49691252107735	20	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGGTCACACATCATATC	1274	False	NA	NA	False	NA	NA	NA	81668463	81693622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_81668523_81668661_81668823_81677185_81677329_81693166
77042	chr14	+	827	3	FSM	ENSMUSG00000039357.3	ENSMUST00000048016.3	4163	3	672	2664	663	-1843	multi-exon	FALSE	canonical	3	28	junction_1	5	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAACTGCCTTCATGTAA	NA	False	NA	NA	False	NA	NA	NA	20745707	20748420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_20745767_20745855_20746482_20748278
77047	chr12	-	360	1	ISM	ENSMUSG00000020962.15	ENSMUST00000021345.14	6064	9	58	34330	58	-2967	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTTGTTTGTGTTGTG	1303	False	NA	NA	False	NA	NA	NA	91556725	91556365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_91556400_91556700
77050	chr7	-	693	1	FSM	ENSMUSG00000074211.5	ENSMUST00000098586.5	2490	1	1782	15	1782	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGTCTTAACAATCTTG	NA	False	NA	NA	False	NA	NA	NA	30021538	30020845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30020800_30021500
77051	chr9	+	857	1	Intergenic	novelGene_1019	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAACTCATACTGTGGAA	1384	False	NA	NA	False	NA	NA	NA	40325921	40326778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_40325900_40326800
77054	chr5	-	517	1	FSM	ENSMUSG00000107304.2	ENSMUST00000201019.2	3395	1	2955	-77	2955	77	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATTAAAAAAAACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	66227283	66226766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_66226800_66227300
77055	chr16	-	315	2	FSM	ENSMUSG00000115907.2	ENSMUST00000229709.2	301	2	-4	-10	-4	10	multi-exon	FALSE	canonical	3	8	junction_1	0	34	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTTGAACCTTGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	13557072	13555705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_13555865_13556916
77056	chr18	+	1001	1	ISM	ENSMUSG00000044646.16	ENSMUST00000058997.15	4572	5	327367	19	88087	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	7	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGACTTGATTAAATGATAT	NA	False	NA	NA	False	NA	NA	NA	76280615	76281616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_76280600_76281600
77057	chr2	+	893	1	NIC	ENSMUSG00000098024.2	novel	497	2	NA	NA	6988	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACTAATCTATTGGTAGT	NA	False	NA	NA	False	NA	NA	NA	126524823	126525716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_126524800_126525700
77060	chr10	+	744	4	Intergenic	novelGene_3528	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	6	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATATGGTAACTTATC	9410	False	NA	NA	False	NA	NA	NA	111269555	111303364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_111269650_111286160_111286324_111294899_111295021_111302998
77062	chr5	-	294	1	NIC	ENSMUSG00000073147.4	novel	1477	7	NA	NA	46333	-4375	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGTGGAAAAAAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	23591974	23591680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_23591700_23592000
77065	chr12	+	852	1	FSM	ENSMUSG00000090946.4	ENSMUST00000172332.4	4240	1	3369	19	3369	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTAAGCATATAAT	NA	False	NA	NA	False	NA	NA	NA	32432071	32432923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_32432100_32432900
77066	ERCC-00019	+	625	1	FSM	ERCC-00019A	DQ883651	627	1	0	2	0	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TG	NA	False	NA	NA	False	NA	NA	NA	0	625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00019_+_0_600
77071	chr5	-	272	1	ISM	ENSMUSG00000038552.15	ENSMUST00000172435.8	2333	7	2748	675	525	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTCCAATAAAGGTTC	NA	False	NA	NA	False	NA	NA	NA	31450532	31450260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31450300_31450500
77072	chr17	-	454	1	Intergenic	novelGene_5	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATAAAACCCTAACTTC	NA	False	NA	NA	False	NA	NA	NA	6367178	6366724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_6366700_6367200
77073	chr12	+	466	1	Intergenic	novelGene_4342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGCAAATGGCTCTTAG	8981	False	NA	NA	False	NA	NA	NA	28760814	28761280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_28760800_28761300
77074	chr1	+	672	3	FSM	ENSMUSG00000026201.13	ENSMUST00000144355.8	691	3	16	3	-6	-2	multi-exon	FALSE	canonical	3	176	junction_1	43	54	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACATGCCCTGGTTTGGCC	NA	False	NA	NA	False	NA	NA	NA	75187507	75188876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_75187697_75187883_75188059_75188568
77075	chr5	-	484	2	Genic_Genomic	ENSMUSG00000081282.3	novel	501	1	NA	NA	190	327	multi-exon	FALSE	canonical	2	4	junction_1	0	16	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCTCCAAAGTGGTTTT	1480	False	NA	NA	False	NA	NA	NA	115630324	115629686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_115630090_115630243
77076	chr19	-	591	1	Genic_Genomic	ENSMUSG00000025035.10	novel	NA	NA	NA	NA	655	527	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGACCCCACCCGAATC	NA	False	NA	NA	False	NA	NA	NA	46530597	46530006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_46530000_46530600
77078	chr13	+	279	1	FSM	ENSMUSG00000062727.5	ENSMUST00000110455.4	476	1	169	28	169	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCACCAGTATTAGAGC	NA	False	NA	NA	False	NA	NA	NA	22220208	22220487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_22220200_22220500
77079	chr5	+	789	2	Intergenic	novelGene_842	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAATAAAGTGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	118547149	118548354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_118547276_118547691
77080	chr10	+	856	2	Antisense	novelGene_ENSMUSG00000020086.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	14	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCGAGATCTTTAGCATTG	NA	False	NA	NA	False	NA	NA	NA	61619271	61620595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_61619413_61619880
77081	chr11	-	1231	1	ISM	ENSMUSG00000038453.18	ENSMUST00000238233.2	6624	15	26356	19	26356	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTTTCTCTCCTGGAT	NA	False	NA	NA	False	NA	NA	NA	97401415	97400184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97400200_97401400
77083	chr7	+	1330	11	NNC	ENSMUSG00000058145.17	novel	1878	15	NA	NA	-137	73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.6	2	35	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTTCCAGTTTTATATA	NA	False	NA	NA	False	NA	NA	NA	66559078	66711978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_66559237_66565598_66565643_66618556_66618663_66652205_66652347_66654087_66654299_66677554_66677657_66679322_66679469_66691532_66691700_66697209_66697241_66701726_66701786_66711813
77084	chr1	+	1038	1	FSM	ENSMUSG00000101387.2	ENSMUST00000187740.2	751	1	-181	-106	-181	106	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGCCAGGCATTCTCCC	NA	False	NA	NA	False	NA	NA	NA	69416298	69417336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_69416300_69417300
77091	chr7	-	391	6	NNC	ENSMUSG00000061028.8	novel	2151	21	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	104.954085199196	98	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACCACATGCTGTCCCC	NA	False	NA	NA	False	NA	NA	NA	19338383	19314967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19315084_19315305_19315331_19316156_19316240_19318079_19318118_19337148_19337231_19338336
77092	chr10	-	674	1	NIC	ENSMUSG00000112289.2	novel	989	3	NA	NA	2332	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACTAGCATGTCTTGGT	8158	False	NA	NA	False	NA	NA	NA	95556019	95555345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_95555300_95556000
77093	chr17	-	177	1	Antisense	novelGene_ENSMUSG00000040312.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTAATAGTCTTAA	8003	False	NA	NA	False	NA	NA	NA	35830258	35830081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35830100_35830300
77094	chr8	-	558	1	Intergenic	novelGene_1734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCCAAACACATACACAAAT	NA	False	NA	NA	False	NA	NA	NA	111165371	111164813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111164800_111165400
77095	chr3	+	204	1	Intergenic	novelGene_3161	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAAACAAAAGGCAGT	NA	False	NA	NA	False	NA	NA	NA	96359794	96359998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_96359800_96360000
77096	chr3	+	237	1	Intergenic	novelGene_3190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTACGCTCATTCTTA	NA	False	NA	NA	False	NA	NA	NA	138195431	138195668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_138195400_138195700
77101	chr16	-	471	3	Antisense	novelGene_ENSMUSG00000004460.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_2	0.5	23	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATATCAATAAACACTACT	NA	False	NA	NA	False	NA	NA	NA	22685248	22683360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_22683591_22684064_22684207_22685149
77102	chr9	-	360	2	Antisense	novelGene_ENSMUSG00000045594.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAGAGAGACAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	114254153	114253456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_114253750_114254086
77103	chr14	+	662	3	ISM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	29	2342	29	-934	5prime_fragment	FALSE	canonical	1	3	junction_2	7	2	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTAAAAGTTCCTCACC	NA	False	NA	NA	False	NA	NA	NA	31363042	31388194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_31363093_31384026_31384283_31387838
77104	chr17	+	380	2	ISM	ENSMUSG00000117431.2	ENSMUST00000235072.2	440	3	2809	-21	2809	1	3prime_fragment	FALSE	canonical	1	1	junction_1	0	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGGGATGGTTGCTCT	5287	False	NA	NA	False	NA	NA	NA	84319131	84320838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_84319229_84320555
77105	chr8	+	986	1	Intergenic	novelGene_1785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTCACCAACAGCATG	4018	False	NA	NA	False	NA	NA	NA	124726184	124727170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_124726200_124727200
77106	chrX	+	1072	2	ISM	ENSMUSG00000035299.17	ENSMUST00000078947.12	3591	10	-23	62815	19	-47503	5prime_fragment	FALSE	canonical	3	9	junction_1	0	6	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGATTTCTCTTCACC	NA	False	NA	NA	False	NA	NA	NA	168662636	168710752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_168662906_168709949
77107	chr17	-	376	2	Intergenic	novelGene_256	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	34	junction_1	0	105	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTCCATCCTTTTACTGT	NA	False	NA	NA	False	NA	NA	NA	47403163	47400338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_47400653_47403101
77109	chr8	-	405	1	FSM	ENSMUSG00000074171.3	ENSMUST00000209493.2	1885	1	1455	25	1454	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTAATAAAAGCCCCCACGA	NA	False	NA	NA	False	NA	NA	NA	91633589	91633184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_91633200_91633600
77110	chr18	+	410	1	Intergenic	novelGene_4517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTATCTTTATTTTAGG	NA	False	NA	NA	False	NA	NA	NA	24526337	24526747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_24526300_24526700
77111	chr14	+	280	2	FSM	ENSMUSG00000039197.11	ENSMUST00000223558.2	289	2	0	9	0	-9	multi-exon	FALSE	canonical	3	60	junction_1	0	190	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTTATATATTATGATGA	NA	False	NA	NA	False	NA	NA	NA	21102678	21103979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_21102769_21103789
77112	chr9	+	903	2	FSM	ENSMUSG00000102224.6	ENSMUST00000195536.2	291	2	90	-702	90	-150	multi-exon	FALSE	canonical	0	0	junction_1	0	4	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAAGCTTGCCTTCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	108014616	108015616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108014766_108014862
77113	chr5	-	806	1	FSM	ENSMUSG00000106680.2	ENSMUST00000202098.2	917	1	27	84	27	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGCCATGAGAATTTTTG	NA	False	NA	NA	False	NA	NA	NA	32871305	32870499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_32870500_32871300
77114	chrX	+	611	3	ISM	ENSMUSG00000025261.19	ENSMUST00000147666.8	3112	8	8	40528	8	201	5prime_fragment	FALSE	canonical	1	3	junction_1	11.5	4	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAATGTATATTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	150586665	150590057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150586799_150589267_150589404_150589715
77115	chr5	+	732	1	Intergenic	novelGene_752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCCTCTGGGTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96310692	96311424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_96310700_96311400
77116	chr5	+	592	1	Intergenic	novelGene_888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATAAAAGGTTCTTGAA	NA	False	NA	NA	False	NA	NA	NA	144902815	144903407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_144902800_144903400
77122	chr5	+	462	4	ISM	ENSMUSG00000066613.15	ENSMUST00000125213.8	868	5	41	1680	10	-38	5prime_fragment	FALSE	canonical	3	13	junction_2	107.307450295349	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTATTGATTATTAAATT	8422	False	NA	NA	False	NA	NA	NA	110144438	110155295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_110144500_110151218_110151319_110154809_110154937_110155121
77123	chr4	+	461	3	NNC	ENSMUSG00000028804.21	novel	3034	13	NA	NA	-69	-280360	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.5	2	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGCGTATAATAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	127881767	127953090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_127881808_127881979_127882065_127952754
77124	chr3	-	516	3	ISM	ENSMUSG00000027530.16	ENSMUST00000119761.2	548	5	-240	4157	-231	-4157	5prime_fragment	FALSE	canonical	2	3	junction_2	0.5	3	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGAGATTTCCTTCAAG	NA	False	NA	NA	False	NA	NA	NA	10366474	10315167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_10315273_10317296_10317418_10366184
77125	chr8	+	582	6	NIC	ENSMUSG00000090206.9	novel	968	8	NA	NA	1499	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1.74355957741627	11	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGAGGCCCTAGGCTCGT	NA	False	NA	NA	False	NA	NA	NA	96039728	96047955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_96039808_96046303_96046366_96046613_96046789_96047277_96047343_96047533_96047567_96047787
77126	chr4	+	685	1	Intergenic	novelGene_2184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCTCGGAGGCAGAGGCA	8758	False	NA	NA	False	NA	NA	NA	156194941	156195626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_156194900_156195600
77127	chr4	-	440	3	Intergenic	novelGene_2171	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAACAGCACTTGTTCCTC	2080	False	NA	NA	False	NA	NA	NA	150913205	150909651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_150909862_150912470_150912642_150913146
77128	chr2	+	578	1	Intergenic	novelGene_2691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTGTTTTTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	119308592	119309170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_119308600_119309200
77129	chr17	+	860	2	FSM	ENSMUSG00000117335.2	ENSMUST00000232741.2	624	2	-483	247	-483	-245	multi-exon	FALSE	canonical	0	0	junction_1	0	4	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACCTTTTGCCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	66192144	66193775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_66192907_66193677
77133	chr15	+	383	1	Intergenic	novelGene_3332	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATTTCAGTTTACGTC	7480	False	NA	NA	False	NA	NA	NA	81407653	81408036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_81407700_81408000
77134	chr4	+	190	2	ISM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	-44	4897	-44	-2463	5prime_fragment	FALSE	canonical	3	4243	junction_1	0	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAAGTGACATTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	152410265	152412040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152410353_152411937
77135	chr4	+	550	1	NIC	ENSMUSG00000086417.2	novel	636	2	NA	NA	5143	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGCTGCAATACTGTGTAT	10	False	NA	NA	False	NA	NA	NA	116687242	116687792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116687200_116687800
77136	chr13	-	737	4	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	2.49443825784929	4	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATAGTTAATGAACACCC	NA	False	NA	NA	False	NA	NA	NA	59059787	59040995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_59041314_59056775_59056897_59058134_59058376_59059730
77137	chrX	-	242	1	Intergenic	novelGene_4094	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACAGCTGATCTTCCTCA	2065	False	NA	NA	False	NA	NA	NA	150984034	150983792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150983800_150984000
77138	chr4	-	622	1	Intergenic	novelGene_1793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCAGTAGATTATTTTA	-15	True	NA	NA	False	NA	NA	NA	3875251	3874629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_3874600_3875300
77139	chr14	+	680	1	Intergenic	novelGene_645	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGATTGACAGGCAGATAG	NA	False	NA	NA	False	NA	NA	NA	120625053	120625733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_120625100_120625700
77140	chr1	-	229	1	FSM	ENSMUSG00000081214.4	ENSMUST00000117444.2	333	1	131	-27	131	27	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTTGTGCTCTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	181069754	181069525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_181069500_181069800
77141	chr8	+	807	2	Antisense	novelGene_ENSMUSG00000031527.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAACTCACCAAAGCTG	NA	False	NA	NA	False	NA	NA	NA	35947005	35948236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_35947391_35947814
77143	chr19	-	351	3	Intergenic	novelGene_1253	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGGAACGTCTGATTGC	4455	False	NA	NA	False	NA	NA	NA	38338195	38337121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_38337287_38337526_38337601_38338083
77144	chr7	+	735	1	Antisense	novelGene_ENSMUSG00000030733.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATTATGTCTATAGCTT	NA	False	NA	NA	False	NA	NA	NA	126074319	126075054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126074300_126075100
77145	chr1	+	709	1	Intergenic	novelGene_448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTCTAGTTTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133596441	133597150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_133596400_133597200
77146	chr13	+	953	1	FSM	ENSMUSG00000012429.10	ENSMUST00000222292.2	4316	1	928	2435	928	57	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAACGTTTTTTGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	17870945	17871898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_17870900_17871900
77147	chr17	-	857	2	FSM	ENSMUSG00000054951.4	ENSMUST00000068258.3	2159	2	454	848	454	-848	multi-exon	FALSE	canonical	0	0	junction_1	0	1	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTTTTTCCTAAGCTTT	NA	False	NA	NA	False	NA	NA	NA	41190995	41187220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_41187753_41190670
77148	chr19	-	465	4	ISM	ENSMUSG00000024962.14	ENSMUST00000130048.8	1158	7	1583	127	1094	-127	3prime_fragment	FALSE	canonical	3	113	junction_2	83.3479987095604	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGCTGGCTGTCTCCCC	6363	False	NA	NA	False	NA	NA	NA	6963414	6959967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6960236_6962728_6962864_6963172_6963209_6963388
77149	chr15	+	507	2	Antisense	novelGene_ENSMUSG00000095638.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCAAAGCAAAATTCTGTG	9759	False	NA	NA	False	NA	NA	NA	96664740	96731132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96665030_96730914
77151	chr11	-	642	1	FSM	ENSMUSG00000057778.15	ENSMUST00000169476.2	2953	1	15	2296	15	-2296	mono-exon	FALSE	NA	NA	NA	NA	NA	17	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCCCTAATATAATATTT	NA	False	NA	NA	False	NA	NA	NA	72686652	72686010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72686000_72686700
77158	chr2	-	549	3	Intergenic	novelGene_2799	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	3.5	5	17	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGCCACCATCACCCAA	NA	False	NA	NA	False	NA	NA	NA	168812269	168807364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_168807476_168807800_168807975_168812005
77159	chr7	+	886	1	Intergenic	novelGene_2897	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACAACCAGTTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	24206959	24207845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_24207000_24207800
77160	chr12	-	536	1	Intergenic	novelGene_4359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCACAGCCCCTATTTAGT	NA	False	NA	NA	False	NA	NA	NA	55445496	55444960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_55445000_55445500
77163	chr7	-	610	2	FSM	ENSMUSG00000059108.5	ENSMUST00000081924.5	663	2	41	12	41	-12	multi-exon	FALSE	canonical	1	2	junction_1	0	7	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCACGTGGTAGCGATTG	NA	False	NA	NA	False	NA	NA	NA	140596780	140595630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140596073_140596612
77164	chr13	+	492	1	FSM	ENSMUSG00000114936.2	ENSMUST00000224038.2	2340	1	48	1800	48	-1800	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGCTAGCAAGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	40876633	40877125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_40876600_40877100
77166	chr1	+	369	1	Antisense	novelGene_ENSMUSG00000025938.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGATTAACATTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	12936795	12937164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_12936800_12937200
77167	chr9	-	919	2	FSM	ENSMUSG00000074284.7	ENSMUST00000135527.2	957	2	42	-4	42	4	multi-exon	FALSE	canonical	1	2	junction_1	0	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATCCTTTATTCAGAACT	NA	False	NA	NA	False	NA	NA	NA	56979208	56964482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_56965086_56978892
77168	chr13	+	305	1	Antisense	novelGene_ENSMUSG00000051627.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTTGGTCTGCACCAGG	NA	False	NA	NA	False	NA	NA	NA	23805880	23806185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_23805900_23806200
77170	chr11	-	469	1	Intergenic	novelGene_2482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAGAGAGAGAGAG	7857	False	NA	NA	False	NA	NA	NA	102211072	102210603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_102210600_102211100
77174	chr2	-	428	3	Antisense	novelGene_ENSMUSG00000118526.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGGGGCTGGGAGGG	6390	False	NA	NA	False	NA	NA	NA	168004317	168003617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_168003673_168003849_168003950_168004044
77175	chr11	+	486	1	ISM	ENSMUSG00000000861.16	ENSMUST00000000881.13	3061	5	94646	7	30323	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTAGGCGGTGTGTGCT	8956	False	NA	NA	False	NA	NA	NA	24122701	24123187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_24122700_24123200
77176	chr13	-	683	1	FSM	ENSMUSG00000051456.5	ENSMUST00000054650.5	781	1	96	2	96	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTATGTGGAGGTTG	NA	False	NA	NA	False	NA	NA	NA	113800116	113799433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_113799400_113800100
77177	chr19	+	491	1	Intergenic	novelGene_1273	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTTTTAAAGCTTGGTT	5807	False	NA	NA	False	NA	NA	NA	41555589	41556080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_41555600_41556100
77179	chrX	+	1092	7	FSM	ENSMUSG00000031384.3	ENSMUST00000033756.3	1139	7	49	-2	49	2	multi-exon	FALSE	canonical	0	0	junction_2	1.25830573921179	12	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGTGGTTTCTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	163289371	163322750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163289583_163297924_163298005_163312403_163312512_163314577_163314729_163316452_163316588_163318365_163318558_163322535
77184	chrX	+	324	1	NIC	ENSMUSG00000087193.8	novel	1449	4	NA	NA	8632	722	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTTTGTTTCTAAGGACT	3280	False	NA	NA	False	NA	NA	NA	7926461	7926785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7926500_7926800
77185	chr13	+	704	1	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	40	-58021	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGATGTGCCAGATAAC	NA	False	NA	NA	False	NA	NA	NA	99481335	99482039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_99481300_99482000
77186	chr3	-	807	1	NIC	ENSMUSG00000028132.16	novel	1336	11	NA	NA	24020	-669	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAAGTTGCCAGCACGTC	NA	False	NA	NA	False	NA	NA	NA	121001162	121000355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_121000400_121001200
77187	chr19	+	717	2	ISM	ENSMUSG00000071647.6	ENSMUST00000224272.2	2978	22	10877	0	2251	0	3prime_fragment	FALSE	canonical	3	89	junction_1	0	3	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGTGCTTTTGTGCG	2364	False	NA	NA	False	NA	NA	NA	8918133	8918946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8918398_8918493
77189	chr8	+	497	2	Antisense	novelGene_ENSMUSG00000003809.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	0	25	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGATTCAGTGGGCAAT	NA	False	NA	NA	False	NA	NA	NA	85620016	85626732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_85620291_85626509
77190	chr2	-	431	1	Intergenic	novelGene_2622	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1059	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40413068	40412637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_40412600_40413100
77191	chr9	-	485	3	NNC	ENSMUSG00000053040.14	novel	5205	6	NA	NA	-23	-11229	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACAGTGTGTCCAATAGA	NA	False	NA	NA	False	NA	NA	NA	66741953	66737794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_66737923_66740440_66740612_66741767
77193	chr15	-	466	1	Intergenic	novelGene_3355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATGAAATTCTATATC	NA	False	NA	NA	False	NA	NA	NA	96968422	96967956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_96968000_96968400
77194	chr14	+	748	4	NNC	ENSMUSG00000033060.17	novel	6092	31	NA	NA	197	-72036	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8.99382504215469	4	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTTCCAGGATTTAAT	NA	False	NA	NA	False	NA	NA	NA	101967589	102046231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_101967662_102031676_102031748_102044889_102044960_102045696
77198	chr7	+	643	2	FSM	ENSMUSG00000046096.8	ENSMUST00000208454.2	813	2	153	17	93	-8	multi-exon	FALSE	canonical	3	191	junction_1	0	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAACATATAACTTAGG	NA	False	NA	NA	False	NA	NA	NA	120276995	120325887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_120277094_120325342
77199	chr11	-	432	3	FSM	ENSMUSG00000049755.15	ENSMUST00000135097.8	426	3	-35	29	-3	5	multi-exon	FALSE	canonical	3	24	junction_2	2.5	120	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTAAAGTATTCAACAGTC	612	False	NA	NA	False	NA	NA	NA	58214175	58210558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_58210781_58213425_58213556_58214095
77200	chr7	-	440	4	NNC	ENSMUSG00000078768.3	novel	382	3	NA	NA	-19	1777	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	58.2198896903417	5	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTATGCAACCAAACCTGG	9968	False	NA	NA	False	NA	NA	NA	29789907	29778719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29778778_29780515_29780643_29786524_29786585_29789712
77201	chr17	+	612	1	NIC	ENSMUSG00000037649.11	novel	742	2	NA	NA	301	-14912	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGCTGTCTCGCCCCCTCC	8804	False	NA	NA	False	NA	NA	NA	34338862	34339474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34338900_34339500
77202	chr14	-	402	2	NNC	ENSMUSG00000115760.2	novel	965	2	NA	NA	758	112	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	39	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTGTGTGAAAGAGTAAA	NA	False	NA	NA	False	NA	NA	NA	31877270	31876592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31876977_31877252
77203	chr2	-	247	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	-30	-46	-30	46	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAGTCTTTGTACACAA	NA	False	NA	NA	False	NA	NA	NA	172351641	172351394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172351400_172351600
77205	chr7	+	744	1	FSM	ENSMUSG00000108738.2	ENSMUST00000205941.2	4052	1	7	3301	7	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAGGTTTGAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	115933503	115934247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_115933500_115934200
77206	chr1	-	443	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	-37	554	-37	21	multi-exon	FALSE	canonical	3	1066	junction_3	717.825574603995	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGATGGCTGCAAACTT	NA	False	NA	NA	False	NA	NA	NA	16727303	16713544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
77207	chr11	+	488	1	Antisense	novelGene_ENSMUSG00000000751.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCAGCATGAACGCTGCAA	NA	False	NA	NA	False	NA	NA	NA	75230722	75231210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75230700_75231200
77208	chr1	-	889	4	FSM	ENSMUSG00000050967.6	ENSMUST00000053355.6	6091	4	818	4384	818	-4384	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTGTCCTTTAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	39689824	39661957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_39662412_39664037_39664152_39686943_39687114_39689673
77209	chr16	+	384	2	NNC	ENSMUSG00000097896.2	novel	349	2	NA	NA	286	19923	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGCTGCTGTATTTATAT	NA	False	NA	NA	False	NA	NA	NA	57101538	57121782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_57101642_57121501
77211	chr11	-	513	4	FSM	ENSMUSG00000087060.8	ENSMUST00000123734.8	787	4	-43	317	-3	-10	multi-exon	FALSE	canonical	3	11	junction_1	8.25967446224258	27	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACCTTAAGCACAGAA	NA	False	NA	NA	False	NA	NA	NA	16901085	16885638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_16885927_16886454_16886565_16900881_16900931_16901019
77215	chr11	+	932	5	ISM	ENSMUSG00000053580.17	ENSMUST00000100330.10	11855	26	186837	94128	63288	58279	internal_fragment	FALSE	canonical	3	7	junction_3	3.20156211871642	2	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGTACACGGATGAGACAG	NA	False	NA	NA	False	NA	NA	NA	105667653	105726002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_105667781_105670764_105670952_105689386_105689651_105701297_105701424_105725774
77218	chr13	-	343	2	FSM	ENSMUSG00000097333.8	ENSMUST00000181573.2	382	2	12	27	12	-27	multi-exon	FALSE	canonical	3	52	junction_1	0	47	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAAATATTGTATTTCT	9234	False	NA	NA	False	NA	NA	NA	67674284	67669184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67669439_67674195
77222	chr17	-	1294	1	Antisense	novelGene_ENSMUSG00000023826.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTCATCCAGGCCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	11060572	11059278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_11059300_11060600
77226	chr1	-	638	1	FSM	ENSMUSG00000093064.5	ENSMUST00000175323.5	313	1	-321	-4	-321	4	mono-exon	FALSE	NA	NA	NA	NA	NA	169	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAATAAAAGCAAATACAAA	NA	False	NA	NA	False	NA	NA	NA	190215675	190215037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_190215000_190215700
77231	chr15	+	171	1	Intergenic	novelGene_3301	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATAATAATGTCCTTGAGA	4191	False	NA	NA	False	NA	NA	NA	64224696	64224867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_64224700_64224900
77233	ERCC-00040	+	725	1	FSM	ERCC-00040A	DQ883661	728	1	0	3	0	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGG	NA	False	NA	NA	False	NA	NA	NA	0	725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00040_+_0_700
77234	chr2	-	940	1	Antisense	novelGene_ENSMUSG00000041921.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCACGTGGCCAAGAGAGC	NA	False	NA	NA	False	NA	NA	NA	71284633	71283693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_71283700_71284600
77236	chr6	-	738	7	NNC	ENSMUSG00000039159.17	novel	4657	7	NA	NA	-28548	4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	127.467207111825	2	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTTGATTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	30272350	30214803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30215083_30221666_30221796_30241370_30241424_30242536_30242577_30260927_30261003_30262145_30262223_30272265
77238	chr18	+	607	1	Intergenic	novelGene_4576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTAAAAATCCTTCAAA	NA	False	NA	NA	False	NA	NA	NA	80513238	80513845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_80513200_80513800
77240	chrX	-	473	1	Intergenic	novelGene_4109	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGACGATGACGTCATCG	NA	False	NA	NA	False	NA	NA	NA	168856555	168856082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_168856100_168856600
77242	chr11	+	482	1	NIC	ENSMUSG00000090266.11	novel	502	2	NA	NA	4859	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	45	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTCCGCTACCACGCC	NA	False	NA	NA	False	NA	NA	NA	116744585	116745067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_116744600_116745100
77243	chr18	-	523	1	Intergenic	novelGene_4511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGCCACACCCACGTGAA	NA	False	NA	NA	False	NA	NA	NA	13106492	13105969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_13106000_13106500
77244	chr7	+	969	3	Antisense	novelGene_ENSMUSG00000030792.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	1	4	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTCGGAGTGTTGGC	1126	False	NA	NA	False	NA	NA	NA	44860872	44862097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44860983_44861134_44861677_44861780
77247	chr8	-	416	1	ISM	ENSMUSG00000043687.17	ENSMUST00000123927.9	844	4	25465	10	25336	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGTGACTTGCGGGTC	NA	False	NA	NA	False	NA	NA	NA	121335766	121335350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_121335400_121335800
77250	chr17	+	431	2	NNC	ENSMUSG00000093622.2	novel	385	2	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAGAAAATTTTAAATAAAT	261	False	NA	NA	False	NA	NA	NA	71141639	71143040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_71141824_71142793
77251	chr4	-	433	1	Antisense	novelGene_ENSMUSG00000029003.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGTGGGTTCCTGGCCG	NA	False	NA	NA	False	NA	NA	NA	148224843	148224410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_148224400_148224800
77253	chr8	-	708	2	ISM	ENSMUSG00000052934.15	ENSMUST00000059018.14	4358	9	24424	2576	4717	1983	3prime_fragment	FALSE	canonical	3	328	junction_1	0	40	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGAGCTGAATGACCGGT	NA	False	NA	NA	False	NA	NA	NA	122281121	122278754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122279185_122280843
77254	chr8	+	939	1	Intergenic	novelGene_1690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAAAGTTATAATCTGGT	NA	False	NA	NA	False	NA	NA	NA	89678388	89679327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_89678400_89679300
77255	chr17	-	169	1	Intergenic	novelGene_154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	116	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTTTTAATTAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35800525	35800356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_35800400_35800500
77256	chr4	+	338	3	NNC	ENSMUSG00000087332.2	novel	354	2	NA	NA	-4	19493	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2.5	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTCAAACCAGGGGACCA	NA	False	NA	NA	False	NA	NA	NA	99457732	99480741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99457876_99470378_99470440_99480607
77258	chr6	+	192	1	Intergenic	novelGene_4237	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTTTTTTTTTTAGCT	NA	False	NA	NA	False	NA	NA	NA	120055444	120055636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_120055400_120055600
77259	chr19	+	459	2	FSM	ENSMUSG00000044387.6	ENSMUST00000142712.2	414	2	-49	4	-49	-4	multi-exon	FALSE	canonical	3	58	junction_1	0	159	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAAAGAAACATCG	NA	False	NA	NA	False	NA	NA	NA	23112214	23113077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_23112319_23112722
77261	chr6	-	214	1	Intergenic	novelGene_4126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	252	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAAACTCAAAAGTAGTTT	9651	False	NA	NA	False	NA	NA	NA	20960692	20960478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_20960500_20960700
77262	chr17	-	180	2	FSM	ENSMUSG00000090101.2	ENSMUST00000161706.2	183	2	0	3	0	-3	multi-exon	FALSE	canonical	3	215	junction_1	0	17	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTATCGTATGTTGGTG	4301	False	NA	NA	False	NA	NA	NA	24938939	24938507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24938582_24938833
77264	chr10	+	877	5	FSM	ENSMUSG00000063428.9	ENSMUST00000213442.2	2408	5	-21	1552	1	-1552	multi-exon	FALSE	canonical	3	5	junction_2	1.29903810567666	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAACTGACTGAACATAA	NA	False	NA	NA	False	NA	NA	NA	40506020	40516012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_40506088_40507601_40507777_40508933_40509043_40513340_40513518_40515663
77265	chr11	+	801	1	Intergenic	novelGene_2464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCGGGAGAGAGCCCCG	NA	False	NA	NA	False	NA	NA	NA	95954882	95955683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_95954900_95955700
77266	chr7	+	582	3	NNC	ENSMUSG00000042759.13	novel	614	3	NA	NA	433	1150	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4.5	2	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAACTATTAAATTTATT	NA	False	NA	NA	False	NA	NA	NA	126187278	126189434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126187335_126187428_126187839_126189318
77267	chr14	+	646	2	Intergenic	novelGene_585	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTGGATTACACTCATG	NA	False	NA	NA	False	NA	NA	NA	61944491	61945613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_61944729_61945204
77268	chr10	-	779	4	ISM	ENSMUSG00000019899.18	ENSMUST00000219763.2	3383	22	67273	-210	-858	0	3prime_fragment	FALSE	canonical	0	0	junction_1	0.471404520791032	4	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGCATGTTTTGTATGA	NA	False	NA	NA	False	NA	NA	NA	26865368	26857280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_26857649_26860286_26860510_26862785_26862917_26865311
77269	chr14	-	380	2	Intergenic	novelGene_508	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	15	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATCTTGACTTAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	4006053	4002499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_4002695_4005868
77271	chr7	+	608	1	Antisense	novelGene_ENSMUSG00000030380.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGGTGAGATTAGAGCG	NA	False	NA	NA	False	NA	NA	NA	12777115	12777723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_12777100_12777700
77272	chr11	+	377	3	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	4482	1	-157	-1	3prime_fragment	FALSE	canonical	3	41	junction_2	2	20	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTAATCCCTCCGTTGAT	NA	False	NA	NA	False	NA	NA	NA	104475632	104478034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_104475841_104476552_104476598_104477910
77273	chr2	-	852	1	Genic_Genomic	ENSMUSG00000069136.5	novel	NA	NA	NA	NA	353	789	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTGACTGAGTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	22785395	22784543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_22784500_22785400
77274	chr14	-	445	1	FSM	ENSMUSG00000053588.5	ENSMUST00000238215.2	1312	1	518	349	516	-349	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTACTCTTAAAAGTATTT	NA	False	NA	NA	False	NA	NA	NA	55797347	55796902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55796900_55797300
77278	chr8	-	261	2	Antisense	novelGene_ENSMUSG00000065952.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	0	7	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCTAAGAGTTGCCTTG	NA	False	NA	NA	False	NA	NA	NA	3626594	3619791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3619915_3626456
77280	chr17	-	375	1	Intergenic	novelGene_106	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCGAACTCACCTTTATAG	NA	False	NA	NA	False	NA	NA	NA	26288973	26288598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_26288600_26289000
77281	chr13	+	945	2	FSM	ENSMUSG00000021396.6	ENSMUST00000021828.6	1167	2	217	5	180	-5	multi-exon	FALSE	canonical	1	2	junction_1	0	6	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCAGCTCTGATGTCC	NA	False	NA	NA	False	NA	NA	NA	51325274	51329219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_51325661_51328660
77282	chr6	+	771	2	Genic_Genomic	ENSMUSG00000108591.2	novel	1560	1	NA	NA	87	-12	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCATACAGACAAAGAGTG	1750	False	NA	NA	False	NA	NA	NA	72416120	72417581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_72416245_72416934
77283	chr9	-	633	2	NNC	ENSMUSG00000040936.16	novel	2639	8	NA	NA	-974	-329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACAGCGCCCCTTCCTTCC	1232	False	NA	NA	False	NA	NA	NA	120790547	120789662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_120789766_120790017
77284	chr6	-	902	1	FSM	ENSMUSG00000030279.16	ENSMUST00000205117.2	2993	1	2539	-448	2539	448	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTCTGGCGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	142965034	142964132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_142964100_142965000
77285	chr1	+	221	2	ISM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	2611	77	2429	-77	3prime_fragment	FALSE	canonical	3	8111	junction_1	0	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGACAGCCATTGTCTC	NA	False	NA	NA	False	NA	NA	NA	55129901	55130389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_55129962_55130228
77286	chr18	-	286	1	Intergenic	novelGene_4508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTCATCTCCCTTGAT	9847	False	NA	NA	False	NA	NA	NA	12638616	12638330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_12638300_12638600
77287	chr6	-	555	2	Intergenic	novelGene_4249	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	0	35	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAATTCTAACTGCAGAA	NA	False	NA	NA	False	NA	NA	NA	125407541	125406386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_125406812_125407411
77288	chr9	-	385	1	Intergenic	novelGene_1171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAATTGGCTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	113417607	113417222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_113417200_113417600
77289	chr11	-	830	1	Intergenic	novelGene_2540	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACGACAAAAAAATTGACTC	NA	False	NA	NA	False	NA	NA	NA	120120459	120119629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_120119600_120120500
77290	chr10	+	444	3	FSM	ENSMUSG00000020153.15	ENSMUST00000152939.8	420	3	-337	313	-9	-313	multi-exon	FALSE	canonical	3	1255	junction_1	451	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGAGTGTAGCCACTG	9352	False	NA	NA	False	NA	NA	NA	80084945	80088934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80085326_80088230_80088268_80088907
77291	chr8	+	324	2	Intergenic	novelGene_1683	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_1	0	56	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTGGGCAATGTAGCAC	NA	False	NA	NA	False	NA	NA	NA	85620641	85626739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_85620736_85626509
77292	chr1	+	559	4	ISM	ENSMUSG00000032908.10	ENSMUST00000036172.10	4002	5	-17	26886	-17	-26886	5prime_fragment	FALSE	canonical	2	4	junction_1	2.35702260395516	1	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTGTCTCAGCAGACT	NA	False	NA	NA	False	NA	NA	NA	78286964	78370040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_78287140_78336707_78336867_78367111_78367292_78369995
77293	chr2	+	645	1	Antisense	novelGene_ENSMUSG00000009030.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATCAAATTTGCTCGATT	NA	False	NA	NA	False	NA	NA	NA	37249179	37249824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_37249200_37249800
77294	chr8	+	767	3	Intergenic	novelGene_1787	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	9	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCAGAGAACTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	126687042	126691417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_126687171_126690426_126690910_126691261
77295	chr8	-	465	1	FSM	ENSMUSG00000098431.3	ENSMUST00000183849.3	55	1	10	-420	10	420	mono-exon	FALSE	NA	NA	NA	NA	NA	24	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCGTCAAATATGTGAAA	NA	False	NA	NA	False	NA	NA	NA	40760960	40760495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_40760500_40761000
77296	chr17	-	419	2	Intergenic	novelGene_19	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	22	junction_1	0	1	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAAGAAAGAAAAATAACT	NA	False	NA	NA	False	NA	NA	NA	15457390	15456567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_15456884_15457287
77297	chr5	-	746	1	FSM	ENSMUSG00000107121.2	ENSMUST00000201728.2	768	1	9	13	9	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTACTGAATTCAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	115769866	115769120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115769100_115769900
77298	chr11	-	386	2	NNC	ENSMUSG00000020380.17	novel	2211	12	NA	NA	53	-14106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCCTGGAACCAAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	53598069	53596853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_53596896_53597725
77300	chr17	-	328	1	Intergenic	novelGene_101	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGAGCAGGCAATCTCTG	5752	False	NA	NA	False	NA	NA	NA	24245637	24245309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_24245300_24245600
77302	chr2	-	677	1	Intergenic	novelGene_2858	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTACCCTGGATTTTT	NA	False	NA	NA	False	NA	NA	NA	179056628	179055951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_179056000_179056600
77303	chr19	-	623	1	Antisense	novelGene_ENSMUSG00000062376.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATCTATAAAATAAAATATC	NA	False	NA	NA	False	NA	NA	NA	46678599	46677976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46678000_46678600
77304	chr6	-	204	2	NNC	ENSMUSG00000107479.2	novel	479	2	NA	NA	149	-23	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	4	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCAATTAAATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	66442534	66431200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_66431365_66442494
77307	chr9	+	631	5	NNC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	47	-11856	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	37.7979827504061	1	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTACACCGATTCAGGTA	9089	False	NA	NA	False	NA	NA	NA	78303105	78319013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_78303282_78306322_78306379_78308130_78308258_78309631_78309764_78318873
77308	chr1	-	697	2	FSM	ENSMUSG00000100280.3	ENSMUST00000185881.2	538	2	-19	-140	17	140	multi-exon	FALSE	canonical	0	0	junction_1	0	3	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCTAAGTGCTGGGATG	NA	False	NA	NA	False	NA	NA	NA	34512212	34510449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_34510827_34511892
77309	chr5	-	331	2	Intergenic	novelGene_683	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	2	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATAAGACTTGCCTTGGT	4504	False	NA	NA	False	NA	NA	NA	31642710	31641461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_31641682_31642599
77311	chr11	-	414	3	Antisense	novelGene_ENSMUSG00000039275.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGCCGGGGCTGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	121178873	121151246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_121151349_121176247_121176441_121178754
77312	chr10	-	326	1	NIC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	17	-13177	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACAGACACAGTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	62438043	62437717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62437700_62438000
77313	chr7	-	784	1	FSM	ENSMUSG00000025465.14	ENSMUST00000211120.2	3128	1	7	2337	0	-2337	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGCCAGCTGAATAGTTCC	NA	False	NA	NA	False	NA	NA	NA	139696328	139695544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139695500_139696300
77315	chr5	-	459	1	FSM	ENSMUSG00000060708.5	ENSMUST00000071949.5	1273	1	553	261	553	-261	mono-exon	FALSE	NA	NA	NA	NA	NA	22	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTTCAGTTTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	36905441	36904982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_36905000_36905400
77318	chr2	-	430	1	FSM	ENSMUSG00000100747.5	ENSMUST00000187343.2	1429	1	592	407	592	291	mono-exon	FALSE	NA	NA	NA	NA	NA	53	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAATTTAAAGGTTTCTTG	6032	False	NA	NA	False	NA	NA	NA	30127643	30127213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30127200_30127600
77320	chr17	-	467	1	NIC	ENSMUSG00000061613.14	novel	1046	8	NA	NA	-2384	972	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGGCCTTGTTCTGAGTG	362	False	NA	NA	False	NA	NA	NA	31870670	31870203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_31870200_31870700
77323	chr8	-	267	1	Intergenic	novelGene_1637	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAATAATAAAAATGGAGGA	612	False	NA	NA	False	NA	NA	NA	46616584	46616317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_46616300_46616600
77325	chr5	-	1019	1	Intergenic	novelGene_792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGTGCTTTCTATACCA	NA	False	NA	NA	False	NA	NA	NA	108152768	108151749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_108151700_108152800
77326	chr15	+	131	2	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	41467	802	3487	-802	internal_fragment	FALSE	canonical	3	2170	junction_1	0	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTGAAGGACTTTGCCC	NA	False	NA	NA	False	NA	NA	NA	81797976	81798532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81798014_81798438
77327	chr19	-	566	5	ISM	ENSMUSG00000024812.12	ENSMUST00000232956.2	4728	24	99	38019	95	4	5prime_fragment	FALSE	canonical	0	0	junction_4	166.67408316832	22	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAACAAAATCTTCAAA	NA	False	NA	NA	False	NA	NA	NA	24202295	24109887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202214
77328	chr10	+	243	2	Intergenic	novelGene_3400	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGCGCGGGCAGCGGCG	8015	False	NA	NA	False	NA	NA	NA	14531079	14581163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_14531245_14581085
77329	chr11	-	343	1	Intergenic	novelGene_2197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCATTTTACACCAACT	NA	False	NA	NA	False	NA	NA	NA	4640298	4639955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_4640000_4640300
77330	chr3	+	424	1	Intergenic	novelGene_3195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAAAATCCCTTTTCCTC	NA	False	NA	NA	False	NA	NA	NA	152136361	152136785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_152136400_152136800
77332	chr8	-	658	1	Intergenic	novelGene_1682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGTTCCCATGACTTG	6250	False	NA	NA	False	NA	NA	NA	85419447	85418789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_85418800_85419400
77333	chr2	-	333	3	ISM	ENSMUSG00000040591.19	ENSMUST00000141262.2	463	4	20049	-50	19967	1	3prime_fragment	FALSE	canonical	0	0	junction_2	3.5	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTCTTTTTTCTTCTTT	1040	False	NA	NA	False	NA	NA	NA	91255000	91249127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_91249264_91252210_91252314_91254906
77335	chr4	-	219	2	ISM	ENSMUSG00000073888.14	ENSMUST00000108032.3	350	4	634	4	13	-4	3prime_fragment	FALSE	canonical	3	34	junction_1	0	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCCACTGCCTCCCTG	646	False	NA	NA	False	NA	NA	NA	41773524	41773191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41773351_41773464
77336	chr1	+	1089	1	FSM	ENSMUSG00000103006.2	ENSMUST00000193962.2	1874	1	-15	800	-15	-800	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTATGGAGAAGATTTTT	NA	False	NA	NA	False	NA	NA	NA	160040497	160041586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_160040500_160041600
77337	chr8	+	443	1	ISM	ENSMUSG00000036810.17	ENSMUST00000121097.8	2209	4	12439	6	12432	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	10	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGAAGCTGCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	88857866	88858309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_88857900_88858300
77338	chr2	+	205	1	FSM	ENSMUSG00000070692.7	ENSMUST00000117447.2	399	1	191	3	191	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATAAATTTTGGCTGATT	NA	False	NA	NA	False	NA	NA	NA	122050664	122050869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_122050700_122050900
77340	chr12	+	237	1	Antisense	novelGene_ENSMUSG00000042507.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACACCTGGATGAGGGC	1659	False	NA	NA	False	NA	NA	NA	84220253	84220490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_84220300_84220500
77341	chr4	-	282	4	ISM	ENSMUSG00000078598.12	ENSMUST00000169631.8	4497	59	235958	253109	235958	115238	internal_fragment	TRUE	canonical	0	0	junction_1	0	5	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTAAAACCCATGGTCT	NA	False	NA	NA	False	NA	NA	NA	113620742	113588196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_113588285_113599373_113599437_113614103_113614167_113620674
77344	chr7	+	438	1	ISM	ENSMUSG00000030816.9	ENSMUST00000205694.2	5279	20	15210	385	7166	-385	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCATGAAAGCCACCCCG	6959	False	NA	NA	False	NA	NA	NA	127203148	127203586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127203100_127203600
77345	chr19	+	328	2	Intergenic	novelGene_1256	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	27	junction_1	0	55	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGCCTTGAACAGACTAGT	NA	False	NA	NA	False	NA	NA	NA	39948008	39960184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_39948197_39960044
77346	chr9	-	454	2	FSM	ENSMUSG00000032403.9	ENSMUST00000168665.3	595	2	121	20	121	-19	multi-exon	FALSE	canonical	3	56	junction_1	0	23	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATGCTGGCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	63306402	63301748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_63301958_63306157
77347	chr6	-	483	1	FSM	ENSMUSG00000044927.7	ENSMUST00000056403.7	1217	1	730	4	730	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	58	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACCATTGTCGTTGTCTT	7639	False	NA	NA	False	NA	NA	NA	87957889	87957406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87957400_87957900
77348	chr4	-	813	5	NNC	ENSMUSG00000028996.10	novel	619	4	NA	NA	-11342	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.38484800354236	24	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGATTGGTTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	149550777	149534144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_149534381_149537305_149537408_149537812_149537992_149549949_149550039_149550570
77349	chr15	+	633	1	ISM	ENSMUSG00000015002.19	ENSMUST00000174135.2	1425	2	3680	5	2874	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCAGACCTGTCTTAAAG	NA	False	NA	NA	False	NA	NA	NA	65662562	65663195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_65662600_65663200
77351	chr17	+	612	2	Fusion	ENSMUSG00000024308.16_ENSMUSG00000051390.11	novel	718	2	NA	NA	-34	-23	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTAGAAGTCTGAGTCC	258	False	NA	-17	True	NA	NA	NA	34138271	34139326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_34138600_34139042
77353	chr9	-	544	2	FSM	ENSMUSG00000038086.5	ENSMUST00000217159.2	552	2	6	2	6	-2	multi-exon	FALSE	canonical	3	6	junction_1	0	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTGTTTGTGCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	50663648	50662379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50662752_50663476
77355	chr17	+	420	3	ISM	ENSMUSG00000033826.11	ENSMUST00000235627.2	13478	83	73421	111477	-20629	20285	internal_fragment	FALSE	canonical	3	32	junction_2	3.5	2	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGTGAAAGTCAAGGTGTC	NA	False	NA	NA	False	NA	NA	NA	30919385	30923810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_30919437_30920818_30921006_30923628
77357	chr15	+	546	7	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-294	-3988	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	53.8415886343138	1	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCGCGTGTTCCCCCTGCC	NA	False	NA	NA	False	NA	NA	NA	84564908	84583885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_84564961_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791
77360	chr5	+	210	2	Intergenic	novelGene_749	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTAGTTGTCTTGGTTCCA	NA	False	NA	NA	False	NA	NA	NA	92659419	92660304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_92659463_92660137
77361	chr12	+	638	1	NIC	ENSMUSG00000035293.14	novel	6803	15	NA	NA	-15	-14539	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGACTCTCACAAACCCC	NA	False	NA	NA	False	NA	NA	NA	51395139	51395777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_51395100_51395800
77364	chr10	+	485	3	FSM	ENSMUSG00000087480.2	ENSMUST00000127564.2	2971	3	54	2432	54	-2432	multi-exon	FALSE	canonical	1	1	junction_2	0.5	16	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGAAACTGTTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	120693587	120696799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_120693667_120694852_120694965_120696505
77365	chr10	+	484	4	Antisense	novelGene_ENSMUSG00000019868.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	4.54606056566195	72	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAATAAAAGTTTTTCAAG	759	False	NA	NA	False	NA	NA	NA	14523823	14535582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_14523956_14528662_14528729_14532326_14532395_14535364
77366	chr7	+	170	1	Intergenic	novelGene_2967	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAATAAATGCTTTTA	NA	False	NA	NA	False	NA	NA	NA	46742539	46742709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_46742500_46742700
77367	chr17	-	577	1	Intergenic	novelGene_129	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGAATTCATAGACTTT	9450	False	NA	NA	False	NA	NA	NA	32414734	32414157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_32414200_32414700
77368	chr7	-	1145	1	Intergenic	novelGene_2992	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTACCATCTCCCTCTTC	9626	False	NA	NA	False	NA	NA	NA	90098456	90097311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_90097300_90098500
77370	chr1	-	327	1	Intergenic	novelGene_414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTTTTTGTTGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92265361	92265034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_92265000_92265400
77371	chr15	-	614	2	Intergenic	novelGene_3295	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	41	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTATATAAATACATATAC	NA	False	NA	NA	False	NA	NA	NA	57839466	57837946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_57838339_57839244
77378	chr6	+	1138	1	Intergenic	novelGene_4149	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATCAACACGGTCACTGG	NA	False	NA	NA	False	NA	NA	NA	43443572	43444710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_43443600_43444700
77379	chr6	-	524	3	FSM	ENSMUSG00000085012.2	ENSMUST00000156734.2	606	3	81	1	81	-1	multi-exon	FALSE	canonical	0	0	junction_2	0.5	9	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCCTGAGTGAGTGGCCA	4149	False	NA	NA	False	NA	NA	NA	113303627	113285627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_113285797_113297400_113297656_113303527
77380	chr5	-	332	2	Intergenic	novelGene_781	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATATCTGTTCTCAGCA	NA	False	NA	NA	False	NA	NA	NA	104870634	104869920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_104870218_104870599
77385	chr13	-	379	2	Intergenic	novelGene_1345	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_1	0	28	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGATAATTCATCATTTT	NA	False	NA	NA	False	NA	NA	NA	38263452	38262196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_38262457_38263333
77386	chr2	+	194	1	ISM	ENSMUSG00000017760.17	ENSMUST00000103093.10	2534	15	6512	441	2203	-441	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAACTGGGCTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	164681304	164681498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164681300_164681500
77387	chr12	-	867	1	Intergenic	novelGene_4402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAATTCACTATACA	NA	False	NA	NA	False	NA	NA	NA	72807494	72806627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_72806600_72807500
77397	chr19	-	694	1	FSM	ENSMUSG00000118132.2	ENSMUST00000235840.2	995	1	122	179	122	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	17	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTACTTTGCTGTGTGA	9042	False	NA	NA	False	NA	NA	NA	4050420	4049726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4049700_4050400
77399	chr5	+	523	4	ISM	ENSMUSG00000002486.16	ENSMUST00000124242.5	3138	12	27	11018	27	1869	5prime_fragment	FALSE	canonical	2	32	junction_2	16.3571255285137	7	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAACGAAGCCTCCCAT	NA	False	NA	NA	False	NA	NA	NA	114845951	114849370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_114846022_114846714_114846900_114847367_114847579_114849313
77400	chr17	-	274	1	ISM	ENSMUSG00000042625.17	ENSMUST00000124111.8	2636	3	1339	1982	1288	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	26	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTGTAAGACAAGGTT	4212	False	NA	NA	False	NA	NA	NA	56870228	56869954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_56870000_56870200
77401	chr14	+	918	1	Intergenic	novelGene_576	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCAGACTTGCTCTCAGCG	NA	False	NA	NA	False	NA	NA	NA	56052549	56053467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_56052500_56053500
77403	chr19	+	1019	1	Antisense	novelGene_ENSMUSG00000100937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCGCGCTCGCGCACGG	NA	False	NA	NA	False	NA	NA	NA	5552799	5553818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5552800_5553800
77406	chr5	-	630	3	Antisense	novelGene_ENSMUSG00000029195.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0.5	8	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAACCATGCCTGAGAA	8043	False	NA	NA	False	NA	NA	NA	65529113	65505519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_65505910_65527601_65527743_65529014
77407	chr15	+	320	2	NNC	ENSMUSG00000075555.13	novel	905	4	NA	NA	-33	-5856	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	22	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAAGGAGTGTTTTCCAT	3859	False	NA	NA	False	NA	NA	NA	79093477	79094512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79093676_79094390
77408	chr7	-	698	2	FSM	ENSMUSG00000010760.6	ENSMUST00000010904.5	757	2	52	7	52	-7	multi-exon	FALSE	canonical	3	98	junction_1	0	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACAACTGTGTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	143056226	143055288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143055554_143055793
77409	chr18	+	949	5	NNC	ENSMUSG00000025429.10	novel	2267	15	NA	NA	20	-83897	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.44391338376205	2	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGACACTTTTTACACTG	2230	False	NA	NA	False	NA	NA	NA	77877633	77883219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77877687_77881229_77881341_77882004_77882171_77882305_77882451_77882745
77412	chr4	-	369	2	Intergenic	novelGene_1955	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAAAGACACTGCCTG	NA	False	NA	NA	False	NA	NA	NA	126971021	126966671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_126966878_126970858
77417	ERCC-00071	+	626	1	FSM	ERCC-00071A	DQ883654	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00071_+_0_600
77418	chr5	+	848	1	Intergenic	novelGene_841	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAAGATCTGTGTGAATT	NA	False	NA	NA	False	NA	NA	NA	118416492	118417340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_118416500_118417300
77420	chr17	+	528	2	Antisense	novelGene_ENSMUSG00000024033.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	33	junction_1	0	11	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGCCGTCATTTGGTC	6177	False	NA	NA	False	NA	NA	NA	31477221	31477948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_31477258_31477456
77422	chr4	-	597	4	Antisense	novelGene_ENSMUSG00000028252.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAGAATAAAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	21742932	21732216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_21732299_21732483_21732560_21735418_21735499_21742573
77426	chr5	+	197	2	ISM	ENSMUSG00000029199.12	ENSMUST00000126036.2	622	4	54	3252	53	-3252	5prime_fragment	FALSE	canonical	3	352	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAACTTAAAGCGCCAGAA	7007	False	NA	NA	False	NA	NA	NA	65548960	65549703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65549017_65549562
77427	chr1	+	409	1	FSM	ENSMUSG00000118790.1	ENSMUST00000240041.1	191	1	0	-218	0	218	mono-exon	FALSE	NA	NA	NA	NA	NA	21	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTAGAGAAAACAGTAATGT	9773	False	NA	NA	False	NA	NA	NA	72294166	72294575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_72294200_72294600
77428	chr18	+	535	2	FSM	ENSMUSG00000087020.2	ENSMUST00000149935.2	522	2	-37	24	-37	-24	multi-exon	FALSE	canonical	0	0	junction_1	0	11	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAATAAATTATTTCCAT	3894	False	NA	NA	False	NA	NA	NA	49888823	49890232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_49889264_49890137
77429	chr5	+	356	2	Intergenic	novelGene_882	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	10	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGAGTGCTGTCATTTC	NA	False	NA	NA	False	NA	NA	NA	144395969	144396780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_144396143_144396597
77431	chr15	-	348	1	FSM	ENSMUSG00000116138.2	ENSMUST00000230372.2	2364	1	1989	27	1534	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCTATTCCATTAAAACT	9885	False	NA	NA	False	NA	NA	NA	76606051	76605703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_76605700_76606100
77432	chr19	-	206	1	FSM	ENSMUSG00000070167.3	ENSMUST00000093658.3	148	1	-72	14	-72	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCCGGAACACTTAACCGT	NA	False	NA	NA	False	NA	NA	NA	8866121	8865915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8865900_8866100
77433	chr5	-	537	1	Antisense	novelGene_ENSMUSG00000029486.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGAGCAGTACACTGCTT	NA	False	NA	NA	False	NA	NA	NA	96357899	96357362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96357400_96357900
77434	chr11	+	627	1	Intergenic	novelGene_2211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGATTTATTTATTATT	9840	False	NA	NA	False	NA	NA	NA	6426177	6426804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_6426200_6426800
77436	chr16	-	564	1	ISM	ENSMUSG00000022952.18	ENSMUST00000023673.14	5861	8	220068	4052	89414	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGATTTTATACCCTTGA	NA	False	NA	NA	False	NA	NA	NA	92402969	92402405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_92402400_92403000
77438	chr13	-	712	2	ISM	ENSMUSG00000114743.2	ENSMUST00000224640.2	1247	4	17725	70	17725	-70	3prime_fragment	FALSE	canonical	1	3	junction_1	0	6	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTCAGCTATGTGG	NA	False	NA	NA	False	NA	NA	NA	59385500	59383633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_59384283_59385437
77440	chr1	+	206	1	FSM	ENSMUSG00000087968.3	ENSMUST00000157343.3	272	1	72	-6	72	6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAATATTCTTACAAAGGA	2383	False	NA	NA	False	NA	NA	NA	87704731	87704937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87704700_87704900
77441	chr6	+	867	1	Intergenic	novelGene_4213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTGTGTTGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	97191974	97192841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_97192000_97192800
77442	chr17	+	256	1	Intergenic	novelGene_99	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCGAAGAACAGCCAGTC	9996	False	NA	NA	False	NA	NA	NA	24048238	24048494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_24048200_24048500
77443	chr12	-	446	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	57	24	57	9	multi-exon	FALSE	canonical	3	45	junction_1	0	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGGCAGTTTGCTTCTG	8395	False	NA	NA	False	NA	NA	NA	104998479	104996899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_104997085_104998218
77444	chr2	+	494	1	ISM	ENSMUSG00000070476.11	ENSMUST00000094251.11	4541	4	9404	7	9346	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGAACTTTCTGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	178065720	178066214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_178065700_178066200
77446	chr2	+	213	1	Intergenic	novelGene_2616	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGAGAAGTTAAATA	NA	False	NA	NA	False	NA	NA	NA	35381931	35382144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_35381900_35382100
77447	chr8	-	413	3	FSM	ENSMUSG00000074217.9	ENSMUST00000190457.2	1351	3	927	11	180	6	multi-exon	FALSE	canonical	3	145	junction_2	17	26	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTACCTGGGCTTCAGTGC	8460	False	NA	NA	False	NA	NA	NA	84737860	84736861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_84737122_84737339_84737402_84737769
77449	chr7	+	731	3	ISM	ENSMUSG00000030996.9	ENSMUST00000033300.4	1425	5	5447	16	5447	-16	3prime_fragment	FALSE	canonical	0	0	junction_2	0.5	10	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAGAGATGTAATTTT	NA	False	NA	NA	False	NA	NA	NA	101756396	101760347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_101756640_101757933_101757976_101759901
77450	chr10	-	892	1	Antisense	novelGene_ENSMUSG00000113949.2_AS_novelGene_ENSMUSG00000113640.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCACCACGGGAGCGTAGT	NA	False	NA	NA	False	NA	NA	NA	80439604	80438712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_80438700_80439600
77452	chr13	+	659	1	NIC	ENSMUSG00000021193.11	novel	3318	26	NA	NA	-2	-4437	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTAAAGAGTGTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	6598207	6598866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_6598200_6598900
77453	chr6	-	422	1	Intergenic	novelGene_4224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACATTGGTAATTCCA	NA	False	NA	NA	False	NA	NA	NA	113673879	113673457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_113673500_113673900
77459	chr17	+	450	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	3	19018	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	772	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	NA	False	NA	NA	NA	95057542	95101578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
77462	chr11	+	121	2	ISM	ENSMUSG00000071866.13	ENSMUST00000135789.8	355	3	15	313	7	-313	5prime_fragment	FALSE	canonical	3	38578	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGGTTGGTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	6365882	6368124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_6365980_6368100
77463	chr1	-	410	3	FSM	ENSMUSG00000099843.2	ENSMUST00000185535.2	471	3	-9	70	-9	-70	multi-exon	FALSE	canonical	2	5	junction_1	0.5	42	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCTTAGTCTGTTCAC	NA	False	NA	NA	False	NA	NA	NA	105918021	105907149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_105907355_105916748_105916834_105917901
77464	chr4	-	366	2	Intergenic	novelGene_1964	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	0	40	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTGGGACTCTCCACT	NA	False	NA	NA	False	NA	NA	NA	129294992	129290080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_129290311_129294856
77465	chr11	-	236	1	NIC	ENSMUSG00000085175.8	novel	686	3	NA	NA	832	-144	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCACTCACCTGTTTGGT	NA	False	NA	NA	False	NA	NA	NA	82671036	82670800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_82670800_82671000
77466	chr10	-	626	3	ISM	ENSMUSG00000019945.11	ENSMUST00000166919.4	1016	6	88801	3	88801	-3	3prime_fragment	FALSE	canonical	0	0	junction_2	0.5	1	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCCACGGGAATGAAACCA	6374	False	NA	NA	False	NA	NA	NA	68272796	68266792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_68267154_68272109_68272251_68272672
77467	chr12	-	488	2	NNC	ENSMUSG00000096953.3	novel	555	2	NA	NA	1700	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTATCAATCAACTTTAC	NA	False	NA	NA	False	NA	NA	NA	83995652	83992000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_83992340_83995503
77468	chr5	+	386	4	FSM	ENSMUSG00000070858.13	ENSMUST00000094869.12	477	4	77	14	0	-10	multi-exon	FALSE	canonical	3	9	junction_1	12.3648246606609	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTAGCATGCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	34140853	34142343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_34140909_34141100_34141241_34141395_34141485_34142241
77470	chr4	+	620	1	Genic_Genomic	ENSMUSG00000087366.8	novel	NA	NA	NA	NA	-192	-7280	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGCGCTAGACACATGT	NA	False	NA	NA	False	NA	NA	NA	94940995	94941615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_94941000_94941600
77473	chr1	+	295	2	NIC	ENSMUSG00000097398.3	novel	358	3	NA	NA	3	-3	combination_of_known_splicesites	FALSE	canonical	3	49	junction_1	0	467	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAACTTGGTCTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	88682678	88683455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_88682774_88683255
77477	chr16	-	464	1	Intergenic	novelGene_3615	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTGCTCCCTCCCCCCTTG	7719	False	NA	NA	False	NA	NA	NA	20317456	20316992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_20317000_20317500
77480	chr16	+	617	1	Genic_Genomic	ENSMUSG00000116597.2	novel	NA	NA	NA	NA	20257	27	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACATAGTACCACTTG	540	False	NA	NA	False	NA	NA	NA	31457207	31457824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_31457200_31457800
77481	chr2	-	732	1	Genic_Genomic	ENSMUSG00000086913.2	novel	NA	NA	NA	NA	-7	-212	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAGTTGTTTAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	121697205	121696473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_121696500_121697200
77482	chr2	+	458	2	NNC	ENSMUSG00000027381.17	novel	974	4	NA	NA	611	115	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGGAGGGCTTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	127970661	128000477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127970845_128000202
77483	chr6	+	435	1	Intergenic	novelGene_4200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCCATGAAACTGACAGA	4858	False	NA	NA	False	NA	NA	NA	87815832	87816267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_87815800_87816300
77485	chr15	-	709	5	ISM	ENSMUSG00000047394.10	ENSMUST00000238996.2	873	7	738	4	13	1	3prime_fragment	FALSE	canonical	0	0	junction_1	0	3	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCTGTGTGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	89263052	89261655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_89261793_89261934_89262076_89262302_89262425_89262537_89262643_89262848
77486	chr4	-	1087	1	ISM	ENSMUSG00000028479.19	ENSMUST00000030201.14	5384	12	48803	213	19923	-213	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAACCAATTTTAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	44035374	44034287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_44034300_44035400
77487	chr5	-	737	4	NNC	ENSMUSG00000029238.12	novel	2287	3	NA	NA	66	2857	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	15.3260852434302	16	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGAGTAGTCTGTATAC	NA	False	NA	NA	False	NA	NA	NA	76452329	76416943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_76417402_76421805_76421891_76451270_76451350_76452214
77491	chr1	+	410	2	FSM	ENSMUSG00000026333.15	ENSMUST00000122925.2	517	2	-24	131	-2	-131	multi-exon	FALSE	canonical	2	2	junction_1	0	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGAGGCAGGGTATGG	NA	False	NA	NA	False	NA	NA	NA	97697901	97698599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_97697981_97698268
77492	chr5	+	762	2	ISM	ENSMUSG00000061882.13	ENSMUST00000166983.3	622	3	3056	15	3056	-15	3prime_fragment	FALSE	canonical	3	8	junction_1	0	4	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATGGAGGCATGAAGTG	1153	False	NA	NA	False	NA	NA	NA	124071807	124074693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_124072328_124074451
77493	chr10	+	399	2	ISM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	14	13388	14	-11341	5prime_fragment	FALSE	canonical	3	1948	junction_1	0	51	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGGGCACAATACCTCC	NA	False	NA	NA	False	NA	NA	NA	111309155	111317482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_111309213_111317140
77494	chr17	-	794	3	Antisense	novelGene_ENSMUSG00000064147.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTCTCAGAAATGGAATT	2493	False	NA	NA	False	NA	NA	NA	29366355	29364034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29364504_29364866_29364948_29366111
77495	chr13	-	723	1	FSM	ENSMUSG00000059395.5	ENSMUST00000068235.6	1463	1	32	708	32	-708	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAGCTCAAGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	21652647	21651924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_21651900_21652600
77496	chr13	+	789	1	Intergenic	novelGene_1466	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAATGAATTTTATAATT	NA	False	NA	NA	False	NA	NA	NA	72548811	72549600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_72548800_72549600
77498	chr4	+	174	1	Intergenic	novelGene_1924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAACAATTGCAAGA	NA	False	NA	NA	False	NA	NA	NA	108760809	108760983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_108760800_108761000
77500	chr14	+	583	2	FSM	ENSMUSG00000090534.2	ENSMUST00000164755.2	2322	2	567	1172	-81	-1172	multi-exon	FALSE	canonical	3	20	junction_1	0	39	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAACAGTTGTCTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	118474210	118474999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_118474357_118474562
77501	chr12	-	617	2	ISM	ENSMUSG00000020651.9	ENSMUST00000001253.8	3075	21	37445	7	14049	-7	3prime_fragment	FALSE	canonical	0	0	junction_1	0	3	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTTTAAAAATGATTTTA	NA	False	NA	NA	False	NA	NA	NA	31572523	31569832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_31570367_31572440
77502	chr10	-	166	1	Intergenic	novelGene_3506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAATAAATAAATCTTTTT	6899	False	NA	NA	False	NA	NA	NA	91131530	91131364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_91131400_91131500
77504	chr10	+	273	2	Antisense	novelGene_ENSMUSG00000112289.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATCACCTCGGGAGGCCA	NA	False	NA	NA	False	NA	NA	NA	95555350	95556155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_95555519_95556050
77505	chrX	-	551	6	Antisense	novelGene_ENSMUSG00000079697.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	3	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTGAGTCAGCTTTCC	NA	False	NA	NA	False	NA	NA	NA	8747563	8740553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_8740603_8740902_8740994_8741468_8741519_8742123_8742200_8746874_8746991_8747394
77507	chr14	+	642	1	Intergenic	novelGene_582	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCTTCTACCACATAGCT	NA	False	NA	NA	False	NA	NA	NA	59608371	59609013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_59608400_59609000
77510	chr2	+	563	1	Intergenic	novelGene_2772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTTCCCCTAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	165652177	165652740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_165652200_165652700
77511	chr6	+	554	1	Genic_Genomic	ENSMUSG00000015733.14	novel	NA	NA	NA	NA	-1521	29	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATATTGTTTCCTAATT	NA	False	NA	NA	False	NA	NA	NA	17659083	17659637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_17659100_17659600
77513	chr7	-	508	1	Antisense	novelGene_ENSMUSG00000074221.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTCCGAACAGGCTTGA	NA	False	NA	NA	False	NA	NA	NA	29684148	29683640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_29683600_29684100
77516	chr3	+	287	1	FSM	ENSMUSG00000087440.3	ENSMUST00000139771.3	1625	1	1244	94	1244	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTATTTGACACACGTT	NA	False	NA	NA	False	NA	NA	NA	51185423	51185710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_51185400_51185700
77517	chr11	+	221	1	Antisense	novelGene_ENSMUSG00000081769.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACACACACACACACACACA	NA	False	NA	NA	False	NA	NA	NA	53695832	53696053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_53695800_53696100
77520	chr16	-	820	1	NIC	ENSMUSG00000033918.17	novel	1362	10	NA	NA	40	-3357	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGCGAAAGCGGAAGAACC	NA	False	NA	NA	False	NA	NA	NA	20121050	20120230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_20120200_20121000
77521	chr1	-	382	1	FSM	ENSMUSG00000107722.2	ENSMUST00000203191.2	616	1	24	210	24	-192	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAGATACTTGAAAGTG	1902	False	NA	NA	False	NA	NA	NA	118386973	118386591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_118386600_118387000
77522	chr7	-	376	1	ISM	ENSMUSG00000003378.10	ENSMUST00000205328.2	3597	20	61853	24	49183	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAACAAAACCCC	NA	False	NA	NA	False	NA	NA	NA	24709673	24709297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_24709300_24709700
77524	chr17	+	492	1	Intergenic	novelGene_110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTTAAGGTGCAACTC	NA	False	NA	NA	False	NA	NA	NA	27423681	27424173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_27423700_27424200
77525	chr4	+	593	1	Intergenic	novelGene_1958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTATACATTTAGTGT	NA	False	NA	NA	False	NA	NA	NA	127236452	127237045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_127236500_127237000
77526	chr13	-	317	3	Intergenic	novelGene_1368	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_2	3	39	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTGTGATTGTGAGCCA	1727	False	NA	NA	False	NA	NA	NA	52598508	52596942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_52597007_52597120_52597241_52598375
77529	chr19	-	368	2	ISM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	12	3400	-4	-1556	5prime_fragment	FALSE	canonical	3	219	junction_1	0	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATGAGTCTGATGAGAGA	6452	False	NA	NA	False	NA	NA	NA	6134961	6134191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6134492_6134893
77531	chr7	+	122	2	ISM	ENSMUSG00000059070.17	ENSMUST00000211325.2	502	3	131	532	21	-532	5prime_fragment	FALSE	canonical	3	8304	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGCCGAACCAACCGGC	7134	False	NA	NA	False	NA	NA	NA	45368706	45369017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_45368764_45368952
77533	chr13	-	605	1	FSM	ENSMUSG00000113128.2	ENSMUST00000223370.2	1040	1	425	10	425	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTATTAGTCACTTGTC	NA	False	NA	NA	False	NA	NA	NA	3949823	3949218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_3949200_3949800
77534	chr10	+	592	2	Intergenic	novelGene_3500	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTAGTGGTATACGGTC	7306	False	NA	NA	False	NA	NA	NA	84316158	84327973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_84316335_84327557
77536	chr8	+	745	1	FSM	ENSMUSG00000054910.6	ENSMUST00000068194.5	1303	1	42	516	42	-516	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTCATTCCTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	12722227	12722972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_12722200_12723000
77537	chr11	-	724	2	Antisense	novelGene_ENSMUSG00000109829.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCAAAATTATGAACAGGAA	NA	False	NA	NA	False	NA	NA	NA	61299029	61298208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_61298606_61298702
77538	chr3	+	772	1	Intergenic	novelGene_3183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGATGCCTAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	121609077	121609849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_121609100_121609800
77539	chrX	-	514	1	NIC	ENSMUSG00000062184.12	novel	4318	5	NA	NA	164	104	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTCAGTGAGTCCCTTA	NA	False	NA	NA	False	NA	NA	NA	50769278	50768764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_50768800_50769300
77541	chr7	-	165	3	ISM	ENSMUSG00000041560.13	ENSMUST00000197477.5	1793	12	6776	369	6776	-369	3prime_fragment	FALSE	canonical	3	1986	junction_2	17.5	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGGAGAAGCGGGCCT	NA	False	NA	NA	False	NA	NA	NA	15672899	15672131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_15672156_15672276_15672354_15672835
77544	chr11	+	401	1	ISM	ENSMUSG00000038893.13	ENSMUST00000037502.7	2317	8	44444	10	5995	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	36	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCCAGCAGTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	95272287	95272688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_95272300_95272700
77545	chr11	-	161	1	Intergenic	novelGene_2492	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAGCAACATAAAAAATAG	6458	False	NA	NA	False	NA	NA	NA	104539466	104539305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_104539300_104539500
77546	chr16	+	183	1	Intergenic	novelGene_3573	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAGCCCTAGGACATC	NA	False	NA	NA	False	NA	NA	NA	4806502	4806685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_4806500_4806700
77547	chrM	+	296	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	1079	3	1079	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTGAATATAGTTTACAA	-17	True	NA	201	True	NA	NA	NA	11245	11541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11200_11500
77552	chr7	-	598	1	Genic_Genomic	ENSMUSG00000035596.15	novel	NA	NA	NA	NA	-42	-1267	mono-exon	FALSE	NA	NA	NA	NA	NA	11	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAGAAAGATCGCGACAG	7351	False	NA	NA	False	NA	NA	NA	3696564	3695966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_3696000_3696600
77553	chrX	-	308	1	FSM	ENSMUSG00000084830.3	ENSMUST00000117527.2	174	1	-56	-78	-56	78	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAATTTGTACAATAAATT	NA	False	NA	NA	False	NA	NA	NA	20447609	20447301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_20447300_20447600
77554	chr4	-	539	1	ISM	ENSMUSG00000028799.16	ENSMUST00000106072.9	2812	9	32400	19	16447	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAGAGAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	128667438	128666899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_128666900_128667400
77555	chrX	-	646	1	Genic_Genomic	ENSMUSG00000084771.9	novel	NA	NA	NA	NA	-30	-30898	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACAGCGGCTGCGCAAGC	NA	False	NA	NA	False	NA	NA	NA	150127872	150127226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_150127200_150127900
77557	chr8	+	682	2	Intergenic	novelGene_1769	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGGGGTCTCATGAGAC	NA	False	NA	NA	False	NA	NA	NA	118510595	118511559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_118510855_118511136
77559	chr19	-	459	2	FSM	ENSMUSG00000100417.3	ENSMUST00000187954.3	762	2	293	10	293	-8	multi-exon	FALSE	canonical	1	4	junction_1	0	17	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAGAGAACCACTACTGA	NA	False	NA	NA	False	NA	NA	NA	45291483	45288918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_45289200_45291305
77560	chr7	+	982	1	Intergenic	novelGene_2989	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCGTCTCCACTTGAAAA	255	False	NA	NA	False	NA	NA	NA	80995145	80996127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_80995100_80996100
77563	chr10	+	601	1	FSM	ENSMUSG00000111905.2	ENSMUST00000218530.2	1948	1	1095	252	1095	-252	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTATTATGCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	33895905	33896506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_33895900_33896500
77566	chr17	-	421	2	FSM	ENSMUSG00000097714.2	ENSMUST00000180802.2	671	2	100	150	100	-150	multi-exon	FALSE	canonical	1	3	junction_1	0	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATGCTTGGCGCCATTC	NA	False	NA	NA	False	NA	NA	NA	28742022	28741504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_28741738_28741834
77567	chr17	-	211	1	Genic_Genomic	ENSMUSG00000097714.2	novel	NA	NA	NA	NA	565	8	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCTATAACGTGCATC	NA	False	NA	NA	False	NA	NA	NA	28741557	28741346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_28741300_28741600
77569	chr4	+	397	2	Intergenic	novelGene_2179	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	3	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGATGTGGACTGGCACT	NA	False	NA	NA	False	NA	NA	NA	154895022	154896220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_154895221_154896021
77570	chr11	-	573	1	Antisense	novelGene_ENSMUSG00000086395.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTGTGTCTATGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	52175239	52174666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_52174700_52175200
77573	chr3	-	269	3	NNC	ENSMUSG00000044080.10	novel	677	3	NA	NA	-46	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	191.5	95	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGCTATCAATGTCTGT	NA	False	NA	NA	False	NA	NA	NA	90421631	90418348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90418430_90419392_90419457_90421507
77575	chr8	+	911	1	NIC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	15	-15307	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGACAAGGTCTCACAGCA	1935	False	NA	NA	False	NA	NA	NA	106937683	106938594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_106937700_106938600
77581	chr10	-	473	1	FSM	ENSMUSG00000020132.11	ENSMUST00000218831.2	843	1	365	5	362	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTAAAACACCCGTCGTT	NA	False	NA	NA	False	NA	NA	NA	115151134	115150661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_115150700_115151100
77582	chr3	-	176	1	FSM	ENSMUSG00000088185.3	ENSMUST00000157560.3	414	1	20	218	20	-218	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGCCCCGCCGGGCCGCC	NA	False	NA	NA	False	NA	NA	NA	108462047	108461871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108461900_108462000
77583	chr1	+	664	1	Antisense	novelGene_ENSMUSG00000053483.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGAGATTGCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	171108884	171109548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_171108900_171109500
77584	SIRV5	+	94	1	ISM	SIRV5A	SIRV505	2029	16	9897	0	-236	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	10897	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV5_+_10900_11000
77585	chr3	+	261	4	Antisense	novelGene_ENSMUSG00000027746.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCGGGGGCCTTCGCGG	NA	False	NA	NA	False	NA	NA	NA	53765359	53771228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_53765397_53768584_53768691_53771032_53771090_53771167
77588	chr11	-	326	1	Intergenic	novelGene_2391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGTCTCTTGTCTGCT	NA	False	NA	NA	False	NA	NA	NA	69102339	69102013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_69102000_69102300
77591	chr14	-	675	1	Intergenic	novelGene_614	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATAACATTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	76141822	76141147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_76141100_76141800
77593	chr12	-	284	3	FSM	ENSMUSG00000020949.10	ENSMUST00000221706.2	408	3	30	94	-7	-94	multi-exon	FALSE	canonical	3	9974	junction_1	427.5	1	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTGACGACAAACCCAAAGA	NA	False	NA	NA	False	NA	NA	NA	65120710	65115823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_65115884_65116724_65116827_65120588
77595	chr18	+	494	5	NNC	ENSMUSG00000024535.17	novel	1977	7	NA	NA	-15	-7417	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_4	9.66953980290686	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTGTCGCAGATGGT	NA	False	NA	NA	False	NA	NA	NA	53378815	53516478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_53378925_53460483_53460568_53473201_53473307_53516141_53516237_53516377
77597	chr16	-	522	2	Intergenic	novelGene_3595	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	8	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACATTTGTTTAATTG	NA	False	NA	NA	False	NA	NA	NA	13234440	13211517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_13212012_13234412
77598	chr9	-	511	3	FSM	ENSMUSG00000051243.15	ENSMUST00000215950.2	4109	3	257	3341	158	31	multi-exon	FALSE	canonical	2	3	junction_2	4	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAACTTCCCTTGGAGCGA	9514	False	NA	NA	False	NA	NA	NA	58109311	58106925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_58107267_58108562_58108656_58109234
77599	chr9	-	606	1	ISM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	65354	0	19728	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGAGTTTTGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	87072235	87071629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_87071600_87072200
77600	chr10	+	447	1	ISM	ENSMUSG00000040195.12	ENSMUST00000118612.8	1522	7	17641	17	17639	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATTTATTTGAAAATAA	NA	False	NA	NA	False	NA	NA	NA	127530573	127531020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127530600_127531000
77602	chr12	+	656	1	NIC	ENSMUSG00000036188.5	novel	2456	10	NA	NA	2	-30411	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACTTCCGGAGGCTTAAGG	NA	False	NA	NA	False	NA	NA	NA	36207158	36207814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_36207200_36207800
77603	chr19	+	603	1	Intergenic	novelGene_1209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTCTTTTTCCTCAAA	NA	False	NA	NA	False	NA	NA	NA	14496866	14497469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_14496900_14497500
77604	chr10	-	348	1	Intergenic	novelGene_3556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATGATATATAAGATGTG	1127	False	NA	NA	False	NA	NA	NA	121554530	121554182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_121554200_121554500
77605	chr11	-	454	1	Intergenic	novelGene_2441	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAGGTCACCAGTAACGCT	NA	False	NA	NA	False	NA	NA	NA	87482527	87482073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_87482100_87482500
77607	chr7	-	261	2	ISM	ENSMUSG00000000605.10	ENSMUST00000210989.2	658	3	783	18	-3	-18	3prime_fragment	FALSE	canonical	2	2	junction_1	0	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGTAGTCTTCAGAGA	NA	False	NA	NA	False	NA	NA	NA	7301773	7301017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_7301196_7301690
77608	chr12	-	570	1	FSM	ENSMUSG00000092738.3	ENSMUST00000174997.3	79	1	-168	-323	-168	323	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATAAATCTTTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	76580154	76579584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_76579600_76580200
77610	chr16	+	350	1	ISM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	29900	845	5582	-845	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTTATTCTGAGCTAT	NA	False	NA	NA	False	NA	NA	NA	32728050	32728400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_32728000_32728400
77611	chr1	-	635	1	Intergenic	novelGene_358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAATAAGAATGACCCCCA	NA	False	NA	NA	False	NA	NA	NA	37524439	37523804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_37523800_37524400
77612	chr9	+	582	3	FSM	ENSMUSG00000038750.13	ENSMUST00000043734.12	735	3	113	40	-39	-16	multi-exon	FALSE	canonical	0	0	junction_1	0	8	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTTCAGGCAGAAGAAA	4739	False	NA	NA	False	NA	NA	NA	78235424	78236862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78235547_78235803_78235975_78236573
77613	chr16	+	527	2	NIC	ENSMUSG00000116976.2	novel	1043	3	NA	NA	-4771	-476	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	2	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGCCAGTATACACGTG	NA	False	NA	NA	False	NA	NA	NA	72891023	72895907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_72891438_72895794
77624	chr2	-	452	1	Intergenic	novelGene_2620	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATATTAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	38898022	38897570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_38897600_38898000
77625	chr2	+	415	2	FSM	ENSMUSG00000039849.7	ENSMUST00000122810.2	383	2	-24	-8	-24	8	multi-exon	FALSE	canonical	3	9	junction_1	0	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAGGCATCTTTGAGTGT	6620	False	NA	NA	False	NA	NA	NA	164721947	164725038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164722019_164724694
77628	chr16	+	448	4	NNC	ENSMUSG00000044442.12	novel	3473	4	NA	NA	-2	-3764	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	53.2749680640188	37	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGCAGCAGAAACACAGT	NA	False	NA	NA	False	NA	NA	NA	87151128	87158794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_87151275_87153065_87153153_87153785_87153877_87158670
77629	chr9	+	314	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	631	43	631	-43	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTAAATAAAAAGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	56345371	56345685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_56345400_56345700
77630	chr17	-	670	1	NIC	ENSMUSG00000051977.17	novel	1447	11	NA	NA	15	-822	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTTCAGACCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	15784569	15783899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_15783900_15784600
77631	chr12	+	509	2	FSM	ENSMUSG00000113209.2	ENSMUST00000220682.2	507	2	-7	5	-7	-5	multi-exon	FALSE	canonical	0	0	junction_1	0	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGAGAAAAGGGCCTG	NA	False	NA	NA	False	NA	NA	NA	54909768	54910444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_54909895_54910061
77632	chr1	+	614	1	ISM	ENSMUSG00000046404.6	ENSMUST00000049813.6	6128	2	3863	2555	3863	-2555	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATCATTTGCTGATATG	NA	False	NA	NA	False	NA	NA	NA	130648926	130649540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_130648900_130649500
77633	chr6	-	415	1	Intergenic	novelGene_4228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCAAGTCATTTCAAACT	NA	False	NA	NA	False	NA	NA	NA	117856377	117855962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_117856000_117856400
77634	chr3	+	470	2	NNC	ENSMUSG00000102545.2	novel	508	2	NA	NA	16	-32	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	6	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTATTCAAACTTAAAAAC	NA	False	NA	NA	False	NA	NA	NA	79194714	79195448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79194773_79195036
77635	chr5	+	343	2	Antisense	novelGene_ENSMUSG00000098302.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCGAGCGCCGGGTGGG	95	False	NA	NA	False	NA	NA	NA	106705624	106722498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_106705925_106722455
77636	chr5	+	404	1	Intergenic	novelGene_795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCCATGATTTGCACC	NA	False	NA	NA	False	NA	NA	NA	108208611	108209015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_108208600_108209000
77638	chr5	+	206	1	ISM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	13304	5293	13122	351	mono-exon	FALSE	NA	NA	NA	NA	NA	12	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGGAGTCAAGTTTATC	132	False	NA	14	True	NA	NA	NA	125531935	125532141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_125531900_125532100
77639	chr11	+	787	1	ISM	ENSMUSG00000042377.9	ENSMUST00000093019.6	4778	5	24735	11	24735	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATCAGAGAGCAGTGTT	NA	False	NA	NA	False	NA	NA	NA	61599979	61600766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_61600000_61600800
77640	chr6	+	330	2	NNC	ENSMUSG00000003031.15	novel	4552	2	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	275	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATTTATTGAGTGCAAC	NA	False	NA	NA	False	NA	NA	NA	134897356	134902471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_134897552_134902336
77642	chr8	-	563	3	NNC	ENSMUSG00000058019.14	novel	987	4	NA	NA	6843	11	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1.5	13	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAGAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	94226553	94225829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_94226238_94226315_94226389_94226471
77643	chr3	+	265	1	Intergenic	novelGene_3184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACGAACGTCTTCATAA	NA	False	NA	NA	False	NA	NA	NA	122778377	122778642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_122778400_122778600
77645	chr13	-	468	1	Intergenic	novelGene_1365	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATATAACAAGCGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	49494802	49494334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_49494300_49494800
77646	chr10	+	258	1	ISM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	1678	18	1678	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTTAGAGACTATATG	NA	False	NA	NA	False	NA	NA	NA	78263180	78263438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_78263200_78263400
77648	chr19	-	232	1	ISM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	35840	15	7494	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCTTGGCATTTCAATTC	NA	False	NA	NA	False	NA	NA	NA	47489718	47489486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_47489500_47489700
77653	chr9	+	811	1	ISM	ENSMUSG00000032177.18	ENSMUST00000039413.15	4653	15	46720	4	15729	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	11	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTCATTTGTTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	21123729	21124540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21123700_21124500
77654	chr5	+	658	2	ISM	ENSMUSG00000050248.12	ENSMUST00000056365.9	4091	20	83409	21	6049	-21	3prime_fragment	FALSE	canonical	3	20	junction_1	0	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGGGAACTTTAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	37579251	37582378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_37579284_37581752
77655	chr6	+	443	2	Intergenic	novelGene_4218	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCATGTATGTCTTACCG	811	False	NA	NA	False	NA	NA	NA	108550710	108552456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_108550806_108552108
77657	chr11	-	645	4	FSM	ENSMUSG00000020377.16	ENSMUST00000221391.2	622	4	-31	8	-31	0	multi-exon	FALSE	canonical	1	3	junction_3	0.471404520791032	21	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGCATTCTCTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	50128415	50127295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50127540_50127843_50127926_50128020_50128092_50128167
77661	chr2	+	319	3	NNC	ENSMUSG00000074593.12	novel	443	4	NA	NA	1262	-4	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2	23	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACAACATTTAGAATTCAA	746	False	NA	NA	False	NA	NA	NA	164558486	164559984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164558546_164558914_164559085_164559894
77662	chr13	-	341	1	ISM	ENSMUSG00000052374.17	ENSMUST00000064204.14	3013	21	42	70947	6	-32154	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCAGCAGGGTCCCTCA	NA	False	NA	NA	False	NA	NA	NA	12355599	12355258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_12355300_12355600
77664	chr9	+	538	1	FSM	ENSMUSG00000052658.6	ENSMUST00000064646.5	727	1	65	124	65	-124	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGTCCCTGCGGAGTATT	4559	False	NA	NA	False	NA	NA	NA	120406476	120407014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120406500_120407000
77668	chr11	+	539	4	Antisense	novelGene_ENSMUSG00000017311.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCGTGGCCTCTGCTCAG	NA	False	NA	NA	False	NA	NA	NA	101997504	101998644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_101997698_101997804_101997881_101997988_101998183_101998568
77669	chr7	+	819	4	NNC	ENSMUSG00000052974.9	novel	1866	10	NA	NA	8902	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGATGTATATCTGACTT	NA	False	NA	NA	False	NA	NA	NA	26830218	26833079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_26830269_26830594_26830783_26831898_26832041_26832640
77671	chr8	+	595	1	Antisense	novelGene_ENSMUSG00000031958.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGGACAACAGCTACTT	NA	False	NA	NA	False	NA	NA	NA	112356486	112357081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112356500_112357100
77673	chr5	-	850	1	Intergenic	novelGene_692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGGGCCTTGTGCGACTG	NA	False	NA	NA	False	NA	NA	NA	32963155	32962305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_32962300_32963200
77674	chr14	+	480	1	ISM	ENSMUSG00000021843.18	ENSMUST00000187839.8	7945	43	88054	2913	6843	417	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGCTATTTTAAATTTT	NA	False	NA	-39	True	NA	NA	NA	47973958	47974438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_47974000_47974400
77676	chr2	+	691	9	NNC	ENSMUSG00000074652.4	novel	6163	42	NA	NA	2464	-9936	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	9.35998798076151	2	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTCCTGCACTTTGGCA	NA	False	NA	NA	False	NA	NA	NA	155455595	155462368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_155455656_155455958_155456116_155456387_155456416_155459443_155459468_155459567_155459661_155459781_155459846_155460653_155460753_155462009_155462114_155462306
77678	chr16	-	234	1	Antisense	novelGene_ENSMUSG00000022967.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATAGCTCTTGCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	91293327	91293093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_91293100_91293300
77679	chr2	+	450	2	FSM	ENSMUSG00000085315.8	ENSMUST00000124210.8	1314	2	19	845	19	-845	multi-exon	FALSE	canonical	1	1	junction_1	0	5	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATACTAGCTTGCAAATC	1206	False	NA	NA	False	NA	NA	NA	52315042	52321060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_52315168_52320735
77681	chr7	+	516	5	ISM	ENSMUSG00000035390.17	ENSMUST00000205666.2	1398	10	6691	110	6691	-110	3prime_fragment	FALSE	canonical	2	8	junction_1	2.12132034355964	2	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCGTGCCGCATCCAGTT	NA	False	NA	NA	False	NA	NA	NA	4701932	4708315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4701952_4702036_4702106_4707126_4707274_4707682_4707715_4708066
77682	chr13	-	603	1	Intergenic	novelGene_1319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTCTTAGCATTTT	NA	False	NA	NA	False	NA	NA	NA	20056027	20055424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_20055400_20056000
77683	chr4	+	301	1	NIC	ENSMUSG00000038368.17	novel	5791	44	NA	NA	72454	14146	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTTTAATTAAAACTATAA	NA	False	NA	NA	False	NA	NA	NA	88115126	88115427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_88115100_88115400
77688	chr10	+	562	1	FSM	ENSMUSG00000112347.2	ENSMUST00000218594.2	1779	1	2	1215	2	-1215	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCCCAAGTAACAACAAAAAA	5478	False	NA	NA	False	NA	NA	NA	62438130	62438692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_62438100_62438700
77689	ERCC-00148	+	456	1	FSM	ERCC-00148A	DQ883642	478	1	19	3	19	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCG	NA	False	NA	NA	False	NA	NA	NA	19	475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00148_+_0_500
77691	chr12	+	602	1	Intergenic	novelGene_4437	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTCTGTGTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	86931915	86932517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_86931900_86932500
77692	chr2	+	385	2	Antisense	novelGene_ENSMUSG00000027107.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	56	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTAAAAGTTGTCCCCCA	NA	False	NA	NA	False	NA	NA	NA	73391293	73395713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_73391509_73395543
77693	chr8	+	531	1	Intergenic	novelGene_1648	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTCCTCTTGCAGGTTT	NA	False	NA	NA	False	NA	NA	NA	53972349	53972880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_53972300_53972900
77694	chr6	+	687	1	Intergenic	novelGene_4231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTATTCAGACTGAGCG	4781	False	NA	NA	False	NA	NA	NA	117884802	117885489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_117884800_117885500
77695	chr12	+	321	2	Intergenic	novelGene_4455	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	0	254	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTCCCTTATAAGTGCAT	687	False	NA	NA	False	NA	NA	NA	104343755	104349079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_104343932_104348934
77696	chr8	+	512	1	Intergenic	novelGene_1716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCGACAAGACAAACTGCAAA	NA	False	NA	NA	False	NA	NA	NA	104678153	104678665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_104678200_104678700
77697	chr18	+	386	2	Antisense	novelGene_ENSMUSG00000052102.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTCTTTTTTAAAAGAC	7046	False	NA	NA	False	NA	NA	NA	38471646	38472740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_38471677_38472384
77698	chr10	-	293	1	Antisense	novelGene_ENSMUSG00000040195.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGCTAACAGGTTTACCCT	NA	False	NA	NA	False	NA	NA	NA	127503458	127503165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127503200_127503500
77700	chr3	+	576	1	FSM	ENSMUSG00000103940.2	ENSMUST00000193036.2	1602	1	-308	1334	-308	-1334	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTGTGTGTCTGCTTTA	8330	False	NA	NA	False	NA	NA	NA	96170792	96171368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96170800_96171400
77701	chr5	+	355	1	Intergenic	novelGene_675	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGGAGTTTTCCCTGCA	2299	False	NA	NA	False	NA	NA	NA	27996770	27997125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_27996800_27997100
77704	chr8	-	335	1	Intergenic	novelGene_1655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAATTAGGTACTTATG	NA	False	NA	NA	False	NA	NA	NA	70243753	70243418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_70243400_70243800
77705	chr10	+	220	1	Antisense	novelGene_ENSMUSG00000020232.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCTCCTGGGGCCCCT	1028	False	NA	NA	False	NA	NA	NA	81184993	81185213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_81185000_81185200
77706	ERCC-00157	+	999	1	FSM	ERCC-00157A	DQ839618	1003	1	4	0	4	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	4	1003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00157_+_0_1000
77708	ERCC-00034	+	961	1	FSM	ERCC-00034A	DQ855001	1003	1	42	0	42	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	42	1003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00034_+_0_1000
77710	chr12	-	127	2	Intergenic	novelGene_4350	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	16	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTTATCTCTATTCCTT	NA	False	NA	NA	False	NA	NA	NA	42366101	42359999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_42360097_42366071
77711	chr11	+	464	1	NIC	ENSMUSG00000039850.17	novel	5070	9	NA	NA	8	-8716	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCGAATGTGTTAGGCAA	6545	False	NA	NA	False	NA	NA	NA	119382463	119382927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_119382500_119382900
77712	chr19	-	315	2	FSM	ENSMUSG00000024826.16	ENSMUST00000155937.2	370	2	31	24	1	-24	multi-exon	FALSE	canonical	1	1	junction_1	0	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTAAAGGTTTTGGAAC	1367	False	NA	NA	False	NA	NA	NA	5962804	5961877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5962157_5962768
77715	chr1	+	718	2	NNC	ENSMUSG00000026254.18	novel	3394	7	NA	NA	26174	895	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAATCATAAGGGTAGACC	NA	False	NA	NA	False	NA	NA	NA	87168181	87169105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87168503_87168708
77716	chr3	+	624	5	FSM	ENSMUSG00000027886.8	ENSMUST00000029485.6	661	5	32	5	32	-5	multi-exon	FALSE	canonical	0	0	junction_2	1.22474487139159	11	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAAGCCCCATGTGTCT	603	False	NA	NA	False	NA	NA	NA	108444888	108452034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_108445016_108449803_108449918_108450754_108450871_108451351_108451477_108451892
77717	chrX	-	841	1	Intergenic	novelGene_3891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCACGCCCCCTCTCTCC	10009	False	NA	NA	False	NA	NA	NA	20571343	20570502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_20570500_20571300
77718	chr2	-	677	1	Intergenic	novelGene_2859	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTACCCTGGATTTTT	NA	False	NA	NA	False	NA	NA	NA	179056628	179055951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_179056000_179056600
77719	chr2	-	598	1	Intergenic	novelGene_2594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTCATTAAAAACAACAACA	9005	False	NA	NA	False	NA	NA	NA	29735642	29735044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_29735000_29735600
77722	chr6	-	386	1	FSM	ENSMUSG00000096010.3	ENSMUST00000179285.3	2863	1	7	2470	7	-2470	mono-exon	FALSE	NA	NA	NA	NA	NA	46	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCACAAAGGCCCTTTTCA	414	False	NA	NA	False	NA	NA	NA	136781406	136781020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_136781000_136781400
77726	chr7	+	299	2	ISM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	5	3459	0	-3459	5prime_fragment	FALSE	canonical	3	476	junction_1	0	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGAGCAGATCCGGTGA	NA	False	NA	NA	False	NA	NA	NA	79910967	79911663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79911172_79911568
77729	chr5	-	412	2	Antisense	novelGene_ENSMUSG00000063430.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGTCTGGGTCACATAAAA	NA	False	NA	NA	False	NA	NA	NA	113681598	113674399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_113674770_113681556
77730	chr13	+	329	1	ISM	ENSMUSG00000021756.13	ENSMUST00000183886.8	3004	6	19160	16	8226	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATGTAATTTTAAACACC	NA	False	NA	NA	False	NA	NA	NA	112619805	112620134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_112619800_112620100
77735	chr4	-	401	1	Intergenic	novelGene_1933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGATGACCTTCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	116414249	116413848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_116413800_116414200
77742	chr13	-	171	1	ISM	ENSMUSG00000021485.15	ENSMUST00000225561.2	1296	5	54	4112	-11	-3887	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGGACAGACCCCGCGC	6144	False	NA	NA	False	NA	NA	NA	55477582	55477411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_55477400_55477600
77744	chr2	+	342	1	Intergenic	novelGene_2682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTCATGCAAAACGATGG	NA	False	NA	NA	False	NA	NA	NA	112198523	112198865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_112198500_112198900
77746	chr15	+	275	1	Antisense	novelGene_ENSMUSG00000022283.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGGCATTTGCTCGGT	NA	False	NA	NA	False	NA	NA	NA	36595907	36596182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36595900_36596200
77751	chr1	+	640	4	FSM	ENSMUSG00000037995.16	ENSMUST00000128638.2	2029	4	1	1388	1	27	multi-exon	FALSE	canonical	2	5	junction_3	2.49443825784929	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAATTGTATGAAGTTGG	NA	False	NA	NA	False	NA	NA	NA	172309787	172317224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172309828_172311847_172312114_172312348_172312538_172317079
77754	chr16	+	164	1	Intergenic	novelGene_3842	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCATTTTAAAAGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	58334742	58334906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_58334700_58334900
77756	chr4	-	354	2	ISM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	247	15471	247	-15471	5prime_fragment	FALSE	canonical	3	128	junction_1	0	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACATTAATAACATTGCAT	NA	False	NA	NA	False	NA	NA	NA	129271662	129262891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129263116_129271532
77757	chr8	+	321	2	Genic_Genomic	ENSMUSG00000109277.2	novel	525	1	NA	NA	37	0	multi-exon	FALSE	canonical	0	0	junction_1	0	9	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGAGTCAGTGTCTACA	NA	False	NA	NA	False	NA	NA	NA	3722466	3722954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_3722638_3722804
77758	chr8	+	696	4	ISM	ENSMUSG00000031709.16	ENSMUST00000093393.5	5334	21	44560	38587	44560	-36603	internal_fragment	FALSE	canonical	2	8	junction_2	1.24721912892465	2	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAAAAAGTATCTGCTCT	7124	False	NA	NA	False	NA	NA	NA	83937048	83960976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_83937161_83948066_83948186_83960108_83960338_83960740
77759	chr1	-	314	2	NNC	ENSMUSG00000026034.18	novel	556	2	NA	NA	144	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGGTCTATAGCTTGGT	NA	False	NA	NA	False	NA	NA	NA	58451876	58451159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58451403_58451805
77760	chr4	+	390	3	NNC	ENSMUSG00000087228.2	novel	660	2	NA	NA	192	3803	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	2	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATGAACACATAAATTGA	NA	False	NA	NA	False	NA	NA	NA	117353840	117361602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_117353926_117357416_117357526_117361406
77761	chr8	+	513	5	NNC	ENSMUSG00000031565.19	novel	1903	13	NA	NA	-7185	-472	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	93.5387620187481	1	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGACGACGATGACTCCT	NA	False	NA	NA	False	NA	NA	NA	26038447	26047771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_26038487_26038964_26039018_26039109_26039239_26045523_26045791_26047746
77764	chr2	+	900	1	Intergenic	novelGene_2660	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAACTGACATAATCCAGG	8608	False	NA	NA	False	NA	NA	NA	75490737	75491637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_75490700_75491600
77766	chr8	+	425	2	FSM	ENSMUSG00000048478.8	ENSMUST00000212637.2	569	2	135	9	135	-7	multi-exon	FALSE	canonical	3	11	junction_1	0	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGTAGCTGGGATCCTT	NA	False	NA	NA	False	NA	NA	NA	123939771	123948776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123939977_123948556
77767	chr5	-	342	2	NNC	ENSMUSG00000038135.5	novel	221	2	NA	NA	-736	-2	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	35	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGTGCTGGCGGGCCTCGG	NA	False	NA	NA	False	NA	NA	NA	24957058	24956002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24956188_24956901
77770	chr9	+	419	2	Antisense	novelGene_ENSMUSG00000097177.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCCCTGTGAAAGGATTCA	4303	False	NA	NA	False	NA	NA	NA	88739985	88740492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_88740356_88740443
77772	chr5	-	323	1	Intergenic	novelGene_844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAAGGCCTGCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	119808523	119808200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_119808200_119808500
77774	chr10	+	396	1	Intergenic	novelGene_3469	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTCTGCATATCTCCA	NA	False	NA	NA	False	NA	NA	NA	72500478	72500874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_72500500_72500900
77775	chr12	+	276	1	Intergenic	novelGene_4356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTACAGGATTCTT	NA	False	NA	NA	False	NA	NA	NA	54757087	54757363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_54757100_54757400
77777	chr6	+	243	2	NNC	ENSMUSG00000085355.3	novel	1729	5	NA	NA	1704	-102	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGCGCACCACATGCACAC	NA	False	NA	NA	False	NA	NA	NA	148848068	148848517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_148848229_148848434
77778	chr12	-	303	1	NIC	ENSMUSG00000044573.17	novel	3066	6	NA	NA	-2	-6542	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCCATGTCACCCTTC	NA	False	NA	NA	False	NA	NA	NA	30961564	30961261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_30961300_30961600
77784	chr17	-	447	2	Antisense	novelGene_ENSMUSG00000002250.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	12	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATTTTTAAAAAAATGAT	NA	False	NA	NA	False	NA	NA	NA	28518016	28515972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_28516116_28517712
77785	chr13	-	576	2	Intergenic	novelGene_1492	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCAGAGAAATTAATCTGC	NA	False	NA	NA	False	NA	NA	NA	84497498	84496795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_84497045_84497171
77786	chr13	-	577	5	NNC	ENSMUSG00000113977.2	novel	439	4	NA	NA	9670	3375	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0.82915619758885	6	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTACATATTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	44712474	44687409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_44687596_44690729_44690899_44703329_44703432_44703524_44703597_44712426
77787	chr9	-	299	1	Intergenic	novelGene_1110	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATTTTTTACAGATC	NA	False	NA	NA	False	NA	NA	NA	72569114	72568815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_72568800_72569100
77788	ERCC-00154	+	480	1	FSM	ERCC-00154A	DQ854997	521	1	33	8	33	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGAGT	NA	False	NA	NA	False	NA	NA	NA	33	513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00154_+_0_500
77789	chr7	+	621	1	Genic_Genomic	ENSMUSG00000108668.2	novel	NA	NA	NA	NA	-147	-13029	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGACAATCTACTGGATGT	930	False	NA	NA	False	NA	NA	NA	128063644	128064265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_128063600_128064300
77790	ERCC-00025	+	732	1	FSM	ERCC-00025A	DQ883689	1978	1	40	1206	40	-1206	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCGGTAGAGAGAATTGC	NA	False	NA	NA	False	NA	NA	NA	40	772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00025_+_0_800
77791	chr8	-	365	1	ISM	ENSMUSG00000096188.2	ENSMUST00000179802.2	7734	4	40668	6584	40668	-6584	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATATGTCACAAGACAGGA	NA	False	NA	NA	False	NA	NA	NA	105081771	105081406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_105081400_105081800
77793	chr14	-	334	2	Genic_Genomic	ENSMUSG00000105501.2	novel	2175	1	NA	NA	-757	-692	multi-exon	FALSE	canonical	0	0	junction_1	0	13	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGAGGGATGGCCTTTC	NA	False	NA	NA	False	NA	NA	NA	54589850	54587610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_54587803_54589708
77794	chr7	+	557	1	NIC	ENSMUSG00000057093.15	novel	4612	6	NA	NA	9426	-1583	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGAGTCTACTTTTAGT	NA	False	NA	NA	False	NA	NA	NA	27401352	27401909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_27401400_27401900
77796	chr15	-	416	2	FSM	ENSMUSG00000053749.13	ENSMUST00000137301.2	855	2	-36	475	-36	-475	multi-exon	FALSE	canonical	1	2	junction_1	0	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGAAGTCGGCGAGTCC	9970	False	NA	NA	False	NA	NA	NA	54976892	54975733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_54975993_54976735
77799	chrX	-	339	4	NNC	ENSMUSG00000043453.6	novel	1821	4	NA	NA	19	29723	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.816496580927726	2	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATGTAAGTCTTGTCAAA	NA	False	NA	NA	False	NA	NA	NA	71430445	71395752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_71395864_71427946_71428036_71428780_71428874_71430399
77800	chr4	+	270	1	Intergenic	novelGene_2180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGCTTGTCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	155049482	155049752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_155049500_155049800
77801	chr11	+	432	1	Intergenic	novelGene_2199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGAAACTAATACTTTGT	NA	False	NA	NA	False	NA	NA	NA	4654744	4655176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_4654700_4655200
77804	chr4	+	777	5	FSM	ENSMUSG00000066113.17	ENSMUST00000120678.2	977	5	1	199	1	-199	multi-exon	FALSE	canonical	1	1	junction_2	1.08972473588517	2	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCTAGAGAAGAATCTGAA	NA	False	NA	NA	False	NA	NA	NA	85972212	86117733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_85972358_86005945_86006074_86029053_86029100_86074871_86075109_86117512
77807	chr16	-	267	2	FSM	ENSMUSG00000022661.15	ENSMUST00000172091.2	281	2	12	2	1	-2	multi-exon	FALSE	canonical	3	15	junction_1	0	89	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATAGTGAAGCCTATCCT	NA	False	NA	NA	False	NA	NA	NA	45229369	45227558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45227675_45229218
77809	chr3	-	318	1	FSM	ENSMUSG00000089417.3	ENSMUST00000158792.3	343	1	22	3	22	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGAGTCTAGTATATGCT	NA	False	NA	NA	False	NA	NA	NA	68992758	68992440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_68992400_68992800
77810	chr2	-	224	1	NIC	ENSMUSG00000038740.10	novel	520	3	NA	NA	12997	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCTGATTTGAGAAGCTG	NA	False	NA	NA	False	NA	NA	NA	33763860	33763636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_33763600_33763900
77814	chr1	+	623	1	NIC	ENSMUSG00000026333.15	novel	2046	8	NA	NA	42	-131	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGAGGCAGGGTATGG	NA	False	NA	NA	False	NA	NA	NA	97697976	97698599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_97698000_97698600
77816	chr7	+	507	4	ISM	ENSMUSG00000035390.17	ENSMUST00000205666.2	1398	10	6798	97	6798	-97	3prime_fragment	FALSE	canonical	2	8	junction_3	2.05480466765633	5	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTTATGGATCTGAC	NA	False	NA	NA	False	NA	NA	NA	4702039	4708328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4702106_4707126_4707274_4707682_4707715_4708066
77817	chr1	-	571	1	NIC	ENSMUSG00000026621.14	novel	2039	7	NA	NA	20998	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAATGACGGCTTTTAC	NA	False	NA	NA	False	NA	NA	NA	184520052	184519481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_184519500_184520100
77818	chr14	-	288	1	Intergenic	novelGene_646	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGAAAATTTACACCCTC	NA	False	NA	NA	False	NA	NA	NA	120714791	120714503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_120714500_120714800
77822	chr10	-	508	2	ISM	ENSMUSG00000009647.14	ENSMUST00000020312.13	2872	8	148919	19215	-9613	-17602	internal_fragment	FALSE	canonical	3	115	junction_1	0	2	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTTTACGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	59303595	59302020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_59302381_59303447
77824	chr17	-	644	4	ISM	ENSMUSG00000024164.16	ENSMUST00000024988.15	5136	41	22602	-1	14438	1	3prime_fragment	FALSE	canonical	0	0	junction_1	0	2	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCAGTGTTTGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	57512534	57510968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_57511155_57511250_57511387_57511466_57511551_57512296
77825	chr7	-	708	1	FSM	ENSMUSG00000025486.18	ENSMUST00000210398.2	1223	1	491	24	22	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAATCATCACACTGCAT	NA	False	NA	NA	False	NA	NA	NA	140461718	140461010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140461000_140461700
77829	chr5	+	350	1	Antisense	novelGene_ENSMUSG00000044681.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAAACCTAGATTCTACA	NA	False	NA	NA	False	NA	NA	NA	28415195	28415545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_28415200_28415500
77831	chr13	+	434	1	ISM	ENSMUSG00000021379.3	ENSMUST00000021810.3	3849	3	1912	2453	1912	-2453	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTATAAGATATTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	48416615	48417049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_48416600_48417000
77832	chr4	-	343	1	Intergenic	novelGene_2137	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAACTTCTCAAATTCTTGA	NA	False	NA	NA	False	NA	NA	NA	147359842	147359499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147359500_147359800
77837	chr19	-	407	2	ISM	ENSMUSG00000024792.10	ENSMUST00000160712.8	706	6	31	1913	2	-1568	5prime_fragment	FALSE	canonical	3	381	junction_1	0	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAACAGATGAAATGATGAG	6470	False	NA	NA	False	NA	NA	NA	6134943	6134203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6134492_6134824
77838	chr18	-	268	1	NIC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	8	-14846	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGCGAGACTTGGGCCA	NA	False	NA	NA	False	NA	NA	NA	62681747	62681479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_62681500_62681700
77839	chr6	-	403	3	NNC	ENSMUSG00000044574.6	novel	2894	2	NA	NA	947	-1172	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	1.5	29	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCCATGAAGTTCCC	6453	False	NA	NA	False	NA	NA	NA	112264850	112263989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112264170_112264552_112264672_112264746
77841	chr12	-	848	1	Antisense	novelGene_ENSMUSG00000090812.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCCCCCAGCTGTGAAT	8377	False	NA	NA	False	NA	NA	NA	87246596	87245748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_87245700_87246600
77844	chr17	-	457	1	Intergenic	novelGene_313	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTTGAGAACTTGGT	NA	False	NA	NA	False	NA	NA	NA	88142323	88141866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_88141900_88142300
77845	chr11	-	372	1	ISM	ENSMUSG00000034164.18	ENSMUST00000132328.8	1248	8	24136	6	22421	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTACTTCGCTTGGTCTC	8660	False	NA	NA	False	NA	NA	NA	5056642	5056270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5056300_5056600
77846	chr11	+	524	1	Intergenic	novelGene_2525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATATGTTGTTTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	115304268	115304792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_115304300_115304800
77847	chr10	-	310	3	NNC	ENSMUSG00000097164.3	novel	6566	3	NA	NA	-6	-5984	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10.5	8	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAATTTTTCTTCTTTTGA	NA	False	NA	NA	False	NA	NA	NA	94524444	94512870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_94512992_94514192_94514310_94524372
77848	chrX	+	712	1	Intergenic	novelGene_3883	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGGATTACAGTGAATAAAA	NA	False	NA	NA	False	NA	NA	NA	13097258	13097970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_13097300_13098000
77850	chr16	-	323	1	Intergenic	novelGene_3598	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACACACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	16120721	16120398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_16120400_16120700
77851	chr15	+	653	3	Antisense	novelGene_ENSMUSG00000022464.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGAGTGCATGCATGCAAC	NA	False	NA	NA	False	NA	NA	NA	96935829	96939525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96936000_96938590_96938692_96939143
77853	chr5	+	490	3	Intergenic	novelGene_718	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	10	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATTATCGGGTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	54152903	54153950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_54153026_54153286_54153448_54153743
77855	chr7	-	587	1	Antisense	novelGene_ENSMUSG00000068959.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGGAAGTTAAAGGGCA	NA	False	NA	NA	False	NA	NA	NA	39167386	39166799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_39166800_39167400
77856	chr13	+	717	1	Genic_Genomic	ENSMUSG00000047789.6	novel	NA	NA	NA	NA	2424	1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATTTTTTCTTGTTATC	NA	False	NA	NA	False	NA	NA	NA	112874567	112875284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_112874600_112875300
77857	chr6	-	326	2	Intergenic	novelGene_4211	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	1	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTACATGTATTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	97022509	97021425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_97021728_97022485
77858	chr14	+	575	1	Antisense	novelGene_ENSMUSG00000040760.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTAAAGATACATTTATC	934	False	NA	NA	False	NA	NA	NA	26692600	26693175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_26692600_26693200
77861	chr8	-	399	4	NNC	ENSMUSG00000031667.17	novel	391	4	NA	NA	9	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	160.06734693733	2	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCGTAGATAATCAATAGC	NA	False	NA	NA	False	NA	NA	NA	91860616	91850210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_91850325_91856345_91856434_91857668_91857777_91860527
77864	chr2	+	580	1	FSM	ENSMUSG00000074576.5	ENSMUST00000099071.5	1973	1	1368	25	1368	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	23	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGAAAAAACGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	168073909	168074489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_168073900_168074500
77867	ERCC-00059	+	508	1	FSM	ERCC-00059A	DQ668356	509	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	T	NA	False	NA	NA	False	NA	NA	NA	0	508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00059_+_0_500
77868	chr2	-	780	1	FSM	ENSMUSG00000042662.17	ENSMUST00000185197.2	3535	1	2764	-9	2764	9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAGACTCTAAAAACAGG	8868	False	NA	NA	False	NA	NA	NA	152783712	152782932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152782900_152783700
77869	chr13	-	775	1	Antisense	novelGene_ENSMUSG00000048924.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCGGCATACTAATATAT	NA	False	NA	NA	False	NA	NA	NA	100806274	100805499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_100805500_100806300
77872	chr5	+	501	2	FSM	ENSMUSG00000097287.4	ENSMUST00000180951.3	2573	2	26	2046	26	-2046	multi-exon	FALSE	canonical	0	0	junction_1	0	1	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGATAGGCATGTGCTACC	NA	False	NA	NA	False	NA	NA	NA	143744134	143749519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_143744545_143749428
77873	chr5	-	181	2	NNC	ENSMUSG00000000568.16	novel	1537	7	NA	NA	-23	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAATAAATCCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	100126820	100108887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100108960_100126711
77874	chr2	-	497	2	NNC	ENSMUSG00000085566.2	novel	2884	2	NA	NA	9	-20426	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAACAAGAGCCAAAATAG	NA	False	NA	NA	False	NA	NA	NA	130748267	130745955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130746316_130748130
77876	chr12	+	645	1	ISM	ENSMUSG00000035954.11	ENSMUST00000037488.8	8552	53	398283	1995	50001	-1301	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTTTCTCATTTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	40894233	40894878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_40894200_40894900
77878	chr6	+	419	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	45	1367	-44	-1086	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAAGGTGAAGAGCAAGT	NA	False	NA	NA	False	NA	NA	NA	136785286	136785705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_136785300_136785700
77879	chr5	-	323	1	Intergenic	novelGene_818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGCTCCGTGTGCGTAT	NA	False	NA	NA	False	NA	NA	NA	111996857	111996534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_111996500_111996900
77882	chr13	-	446	1	Intergenic	novelGene_1530	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATATGCACATATGTATCC	NA	False	NA	NA	False	NA	NA	NA	106992774	106992328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_106992300_106992800
77884	chr3	-	288	1	FSM	ENSMUSG00000104675.2	ENSMUST00000195951.2	427	1	124	15	124	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTATATTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	137624082	137623794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_137623800_137624100
77886	chr5	-	407	3	ISM	ENSMUSG00000019178.18	ENSMUST00000142343.8	963	8	-16	21024	-6	-11544	5prime_fragment	FALSE	canonical	1	1	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTACAGTCGTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	135807161	135797526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_135797770_135799109_135799217_135807104
77889	chr13	-	375	1	FSM	ENSMUSG00000060678.6	ENSMUST00000102967.3	820	1	-4	449	-4	-449	mono-exon	FALSE	NA	NA	NA	NA	NA	688	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTCCTAGGAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	23882441	23882066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23882100_23882400
77891	chr2	-	320	2	FSM	ENSMUSG00000044145.3	ENSMUST00000150956.2	2364	2	-3	2047	-3	-2047	multi-exon	FALSE	canonical	3	36	junction_1	0	143	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTGTAGATCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	127050177	127046533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_127046771_127050094
77892	chr8	+	229	2	ISM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	28	3267	28	-475	5prime_fragment	FALSE	canonical	3	4513	junction_1	0	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCGAGAGATGGAAGGTGA	NA	False	NA	NA	False	NA	NA	NA	57964968	57965766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_57965040_57965608
77894	chr11	+	405	1	Intergenic	novelGene_2268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATCTAGCGTTGGCGTCC	1823	False	NA	NA	False	NA	NA	NA	51579714	51580119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_51579700_51580100
77895	chr17	-	300	1	FSM	ENSMUSG00000117376.2	ENSMUST00000234617.2	311	1	7	4	7	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACACTCTCTTTCCTTGG	8611	False	NA	NA	False	NA	NA	NA	29833737	29833437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29833400_29833700
77896	chr11	+	259	1	Genic_Genomic	ENSMUSG00000020476.15	novel	NA	NA	NA	NA	12188	14	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGAGCATTCGTGCATT	9970	False	NA	59	True	NA	NA	NA	5750717	5750976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_5750700_5751000
77897	chr15	+	615	1	Intergenic	novelGene_3370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGGTCAGGACCCCGCG	NA	False	NA	NA	False	NA	NA	NA	100124917	100125532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_100124900_100125500
77899	chr8	+	297	1	Intergenic	novelGene_1570	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAATATATTCAGATTCAA	NA	False	NA	NA	False	NA	NA	NA	4662495	4662792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_4662500_4662800
77901	chr11	+	405	1	NIC	ENSMUSG00000020900.16	novel	7791	41	NA	NA	-38092	-739	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGGTCTGTGGGAGAATC	NA	False	NA	NA	False	NA	NA	NA	68636165	68636570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68636200_68636600
77902	chr7	-	321	2	NNC	ENSMUSG00000005575.17	novel	1472	6	NA	NA	64	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTCTGCCTCTTCCTT	8507	False	NA	NA	False	NA	NA	NA	12772136	12769165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_12769303_12771952
77903	chr17	-	350	1	NIC	ENSMUSG00000047123.9	novel	2992	2	NA	NA	34	-7084	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGCTATTTCCTGATCAGA	847	False	NA	NA	False	NA	NA	NA	56583752	56583402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56583400_56583800
77904	chr17	+	340	2	Intergenic	novelGene_246	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	5	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGGGTCCTCAAACTA	NA	False	NA	NA	False	NA	NA	NA	44416820	44417257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_44416959_44417055
77906	chr17	-	689	2	NNC	ENSMUSG00000024206.16	novel	3283	17	NA	NA	14	-29749	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	3	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAAGTGTGGCCTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	57137925	57136657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_57137304_57137882
77912	chr8	+	283	2	Intergenic	novelGene_1788	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	0	330	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGAACTTTGTCTCGACT	NA	False	NA	NA	False	NA	NA	NA	126687047	126691421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_126687171_126691261
77913	chr11	-	416	1	Genic_Genomic	ENSMUSG00000078812.11	novel	NA	NA	NA	NA	-86	-4172	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCAGGGTTCTGTATTGCG	9283	False	NA	NA	False	NA	NA	NA	69812870	69812454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_69812500_69812900
77916	chr11	+	225	1	Antisense	novelGene_ENSMUSG00000037601.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTACAGAATCGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	93850082	93850307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_93850100_93850300
77917	chr7	+	485	1	Antisense	novelGene_ENSMUSG00000109015.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCACCCAAGGGGCCGACT	7960	False	NA	NA	False	NA	NA	NA	27868563	27869048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_27868600_27869000
77918	chr19	+	295	2	ISM	ENSMUSG00000024875.6	ENSMUST00000235773.2	714	4	82	605	77	-605	5prime_fragment	FALSE	canonical	3	563	junction_1	0	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAGGGAAGGACATAGTG	NA	False	NA	NA	False	NA	NA	NA	5138664	5139629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5138777_5139446
77922	chr1	-	460	1	Genic_Genomic	ENSMUSG00000026220.7	novel	NA	NA	NA	NA	-61	-5402	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAGCTGAGAGCCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	84912916	84912456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_84912500_84912900
77923	chr7	+	609	2	Antisense	novelGene_ENSMUSG00000097415.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCCGGGCGCTCCTGCCG	NA	False	NA	NA	False	NA	NA	NA	75430639	75431714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_75431090_75431555
77928	chr14	+	220	1	Intergenic	novelGene_524	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGCATGAA	NA	False	NA	NA	False	NA	NA	NA	20723982	20724202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_20724000_20724200
77929	chr17	-	459	1	Intergenic	novelGene_269	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGAAGCAAGCCCCCGC	NA	False	NA	NA	False	NA	NA	NA	56611123	56610664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_56610700_56611100
77931	chr10	+	529	1	Intergenic	novelGene_3443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCCATGCTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	59788035	59788564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_59788000_59788600
77939	chr5	+	463	1	Intergenic	novelGene_846	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAGTAGGTTAAAAAAAA	1030	False	NA	NA	False	NA	NA	NA	119872523	119872986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_119872500_119873000
77942	chr2	+	311	3	Intergenic	novelGene_2590	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	2	4	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTAAAACGTAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	29439748	29443385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_29439841_29442646_29442703_29443222
77945	chr12	-	458	2	Antisense	novelGene_ENSMUSG00000020646.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	15	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTACAATCTGGGGGGGAA	585	False	NA	NA	False	NA	NA	NA	25002295	25000216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_25000511_25002131
77946	chr11	+	378	1	Intergenic	novelGene_2278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTTCCTTTAGAATAAAT	NA	False	NA	NA	False	NA	NA	NA	53598287	53598665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_53598300_53598700
77950	chr2	-	486	3	NNC	ENSMUSG00000086416.2	novel	2839	3	NA	NA	-28933	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	3	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAGTTTCTTATCTTACT	309	False	NA	NA	False	NA	NA	NA	125088365	125049465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_125049789_125053569_125053660_125088292
77952	chr5	-	360	2	Antisense	novelGene_ENSMUSG00000012428.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACATGTTTGTACTAGAA	NA	False	NA	NA	False	NA	NA	NA	8053776	8031625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_8031888_8053678
77954	chr11	+	258	2	NNC	ENSMUSG00000020604.14	novel	430	4	NA	NA	17	-11301	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	10	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAATAATTTATTTATTT	432	False	NA	NA	False	NA	NA	NA	109364216	109369422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109364248_109369195
77955	chr9	+	312	1	Antisense	novelGene_ENSMUSG00000038742.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAAACTTCCATTTT	NA	False	NA	NA	False	NA	NA	NA	20789862	20790174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_20789900_20790200
77957	chr2	+	247	1	Antisense	novelGene_ENSMUSG00000027620.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACCTGTTGACAAAAAGAAA	542	False	NA	NA	False	NA	NA	NA	155989861	155990108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_155989900_155990100
77958	chr12	-	450	1	ISM	ENSMUSG00000021067.9	ENSMUST00000021467.8	2524	5	21541	0	12422	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGGTCCTTGAATGCA	NA	False	NA	NA	False	NA	NA	NA	70012235	70011785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_70011800_70012200
77959	chr8	-	298	2	Antisense	novelGene_ENSMUSG00000007888.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTGGAAAGAAGAGTGCG	NA	False	NA	NA	False	NA	NA	NA	70956722	70956243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_70956288_70956468
77960	chr6	-	510	1	Genic_Genomic	ENSMUSG00000030034.13	novel	NA	NA	NA	NA	-121	-630	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATCTGGGGCTATGGAGG	NA	False	NA	NA	False	NA	NA	NA	83102533	83102023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_83102000_83102500
77964	chrX	-	204	1	ISM	ENSMUSG00000035847.16	ENSMUST00000101509.9	4972	9	21698	114	17705	-114	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATGTAATAAAGTAAATTG	NA	False	NA	NA	False	NA	NA	NA	69386992	69386788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_69386800_69387000
77967	chr3	-	323	2	ISM	ENSMUSG00000033222.17	ENSMUST00000127357.2	4544	17	12	22895	12	-10485	5prime_fragment	FALSE	canonical	3	273	junction_1	0	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACAGTGGACATGGGAAT	NA	False	NA	NA	False	NA	NA	NA	100876967	100876560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_100876852_100876935
77968	chr2	-	727	1	FSM	ENSMUSG00000085815.2	ENSMUST00000144688.2	385	1	-418	76	-418	-76	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGCTGGAAAAAGTCTGC	NA	False	NA	NA	False	NA	NA	NA	52629885	52629158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_52629200_52629900
77974	chr4	+	231	1	Antisense	novelGene_ENSMUSG00000029050.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCCTCAGCCCTAGGTA	3156	False	NA	NA	False	NA	NA	NA	155238660	155238891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_155238700_155238900
77976	chr11	-	500	2	Intergenic	novelGene_2259	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAAGGTGTCCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	49134733	49130921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_49131118_49134429
77977	chr16	+	543	1	Intergenic	novelGene_3844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCTTTCCAGTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	62607319	62607862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_62607300_62607900
77979	chr17	+	272	1	NIC	ENSMUSG00000023852.15	novel	1372	8	NA	NA	-7507	-609	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACTATTTCCCCTATG	NA	False	NA	NA	False	NA	NA	NA	15951289	15951561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15951300_15951600
77981	chr17	+	451	1	Intergenic	novelGene_263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTTTAACTCAAAGTCAAA	NA	False	NA	NA	False	NA	NA	NA	53873391	53873842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_53873400_53873800
77983	chr2	+	583	4	ISM	ENSMUSG00000036053.18	ENSMUST00000050719.13	3380	27	256258	13658	256258	-13658	internal_fragment	FALSE	canonical	0	0	junction_1	2.86744175568088	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGTCATCTCAAAAGCTC	NA	False	NA	NA	False	NA	NA	NA	53004137	53008232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_53004249_53004866_53005070_53006851_53007087_53008198
77985	chr4	-	489	2	Intergenic	novelGene_1953	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCTATTTAACTATTTT	NA	False	NA	NA	False	NA	NA	NA	126868358	126867061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_126867518_126868325
77987	chr18	-	281	2	Intergenic	novelGene_4541	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACACTTTGAATTTTACC	NA	False	NA	NA	False	NA	NA	NA	45692420	45691142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_45691359_45692355
77989	chr1	-	369	1	ISM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	38882	18	38838	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATCATTTTGGAAGCATC	NA	False	NA	NA	False	NA	NA	NA	106648575	106648206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_106648200_106648600
77991	chr7	+	365	1	ISM	ENSMUSG00000036931.16	ENSMUST00000108176.9	2014	12	6628	22	2801	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAACTCAATTTGGCCT	5826	False	NA	NA	False	NA	NA	NA	30127784	30128149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_30127800_30128100
77995	chr14	-	421	4	Intergenic	novelGene_625	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAGAGGACCAGGAGCTC	NA	False	NA	NA	False	NA	NA	NA	79804604	79797711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_79797826_79798186_79798365_79802898_79803013_79804589
77998	chr15	-	216	1	Antisense	novelGene_ENSMUSG00000071724.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAACGAACAACAATTTAA	2185	False	NA	NA	False	NA	NA	NA	76178720	76178504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76178500_76178700
77999	chr13	-	230	1	Intergenic	novelGene_1328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCGATTTGATTAACTCAA	NA	False	NA	NA	False	NA	NA	NA	23597179	23596949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_23596900_23597200
78000	chr17	-	368	1	FSM	ENSMUSG00000116657.2	ENSMUST00000231483.2	10812	1	9	10435	9	-10435	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGTGAAACCCAAACGTG	2459	False	NA	NA	False	NA	NA	NA	27775483	27775115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_27775100_27775500
78002	chr5	-	213	2	ISM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	265	6838	25	-5115	5prime_fragment	FALSE	canonical	3	705	junction_1	0	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAAGAAGCGGCTCCAGG	5328	False	NA	NA	False	NA	NA	NA	135773037	135771176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_135771254_135772901
78003	chr18	-	404	2	FSM	ENSMUSG00000097080.9	ENSMUST00000181757.8	1173	2	96	673	96	-5	multi-exon	FALSE	canonical	1	1	junction_1	0	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATATGGGAGTTTTCATTG	NA	False	NA	NA	False	NA	NA	NA	38383522	38372130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_38372243_38383230
78005	chr4	-	555	1	Intergenic	novelGene_1944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTACAACAGCATGTGGA	NA	False	NA	NA	False	NA	NA	NA	125323191	125322636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_125322600_125323200
78006	chr11	+	519	1	Antisense	novelGene_ENSMUSG00000020375.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTATTTGTTGTTGTTA	NA	False	NA	NA	False	NA	NA	NA	50321695	50322214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_50321700_50322200
78007	chr17	-	287	1	FSM	ENSMUSG00000013236.18	ENSMUST00000224193.2	4547	1	-30	4290	25	-4290	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGACCGTTATGCTTCT	NA	False	NA	NA	False	NA	NA	NA	56769191	56768904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56768900_56769200
78008	chr7	-	356	1	Intergenic	novelGene_2904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTTGTGCCTTATATA	5247	False	NA	NA	False	NA	NA	NA	28049957	28049601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_28049600_28050000
78009	chr2	-	684	1	Intergenic	novelGene_2606	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAAACTTAACTCTTA	NA	False	NA	NA	False	NA	NA	NA	32856868	32856184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_32856200_32856900
78010	chr4	-	425	1	Antisense	novelGene_ENSMUSG00000041025.16_AS_novelGene_ENSMUSG00000094439.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTCGAATAAAGGTGATG	9908	False	NA	NA	False	NA	NA	NA	139342654	139342229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_139342200_139342700
78012	chr4	+	375	1	ISM	ENSMUSG00000028760.17	ENSMUST00000084215.12	8134	34	213666	1446	5099	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGACTTCTCCTTTTGAC	2799	False	NA	NA	False	NA	NA	NA	137933998	137934373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137934000_137934400
78015	chr6	-	760	5	Antisense	novelGene_ENSMUSG00000009376.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTCAGGCAGATTCCCA	NA	False	NA	NA	False	NA	NA	NA	17571883	17558814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_17558890_17562156_17562267_17563552_17563718_17571369_17571512_17571615
78017	chrX	-	401	2	Intergenic	novelGene_3922	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	4	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATGTGTGTGTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	47547692	47547186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_47547414_47547518
78018	chr1	-	355	1	ISM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	75196	7	11282	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCAAGGATTCTTTATGT	NA	False	NA	NA	False	NA	NA	NA	80243001	80242646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_80242600_80243000
78020	chr4	+	536	1	Intergenic	novelGene_1835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAAGAAGCAGGCAATTG	7660	False	NA	NA	False	NA	NA	NA	43799289	43799825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_43799300_43799800
78022	chr17	-	539	1	Intergenic	novelGene_6	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTTGGAGACTGAAGAG	NA	False	NA	NA	False	NA	NA	NA	6368438	6367899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_6367900_6368400
78023	chr5	+	293	1	Antisense	novelGene_ENSMUSG00000060261.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGGCACCCCGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	134342862	134343155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_134342900_134343200
78024	chr8	-	502	1	Intergenic	novelGene_1735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTTTTTTTTTTTT	9544	False	NA	NA	False	NA	NA	NA	111168456	111167954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111168000_111168500
78025	chr13	-	489	4	NNC	ENSMUSG00000113508.2	novel	1396	2	NA	NA	1138	56555	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	19	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCCAGATCTGCCTGCTG	NA	False	NA	NA	False	NA	NA	NA	8080251	8007176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_8007352_8066108_8066168_8079871_8080104_8080228
78026	chr9	-	328	1	Antisense	novelGene_ENSMUSG00000093803.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAAACGCTCGGCAGTCAC	NA	False	NA	NA	False	NA	NA	NA	124195855	124195527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_124195500_124195900
78028	chr14	+	536	1	FSM	ENSMUSG00000022070.8	ENSMUST00000228082.2	881	1	72	273	46	-273	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGCATGCGTTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	99283961	99284497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_99284000_99284500
78029	chr5	-	339	1	Intergenic	novelGene_712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTCAAGGGAGAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	43390099	43389760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_43389800_43390100
78031	chr12	+	391	1	Genic_Genomic	ENSMUSG00000037957.15	novel	NA	NA	NA	NA	9745	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTGTTTATCCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	110770282	110770673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_110770300_110770700
78032	chr1	-	235	1	FSM	ENSMUSG00000025982.14	ENSMUST00000185429.2	3589	1	2005	1349	579	-1349	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGTGACTAAAGGAAATGC	NA	False	NA	NA	False	NA	NA	NA	55029695	55029460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55029500_55029700
78033	chr2	-	415	1	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	81304	440	14219	-440	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTCAGTTTTTATTTGA	NA	False	NA	NA	False	NA	NA	NA	62161271	62160856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_62160900_62161300
78034	chr1	+	583	1	Intergenic	novelGene_478	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGAATTCTCTTTGCTCTGT	4934	False	NA	NA	False	NA	NA	NA	165830702	165831285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_165830700_165831300
78036	chr2	+	518	1	ISM	ENSMUSG00000026718.18	ENSMUST00000028050.14	3981	13	68427	1232	8494	-1232	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCACAATAAATTGTACATT	NA	False	NA	NA	False	NA	NA	NA	14147426	14147944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_14147400_14147900
78037	chr11	+	392	1	ISM	ENSMUSG00000001751.10	ENSMUST00000001802.10	2560	6	7206	63	5255	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	8	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAAAGTACCATTTTCTG	NA	False	NA	NA	False	NA	NA	NA	100968043	100968435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_100968000_100968400
78038	chr4	-	391	1	Intergenic	novelGene_2000	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAAATTCTATCTGAGCA	NA	False	NA	NA	False	NA	NA	NA	140427051	140426660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_140426700_140427100
78039	chr7	+	423	1	NIC	ENSMUSG00000074405.9	novel	7503	3	NA	NA	-60	-3107	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTCATCAGCTTCCTCC	2888	False	NA	NA	False	NA	NA	NA	5023508	5023931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_5023500_5023900
78040	chr9	+	626	1	Intergenic	novelGene_1085	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGAAAGGTTCCAGATC	NA	False	NA	NA	False	NA	NA	NA	59524723	59525349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_59524700_59525300
78041	chr6	+	509	1	Intergenic	novelGene_4217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTTTAGGAAGGGAAGAT	NA	False	NA	NA	False	NA	NA	NA	108189222	108189731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_108189200_108189700
78045	chr9	+	258	2	NNC	ENSMUSG00000111147.2	novel	3468	7	NA	NA	20184	-6141	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	7	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAAGTGCACACAGCTC	NA	False	NA	NA	False	NA	NA	NA	60959677	60960257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_60959709_60960030
78054	chrY	+	243	2	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	3097	5930	at_least_one_novel_splicesite	FALSE	canonical	3	404	junction_1	0	8	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGATATGCAGATGTGT	268	False	NA	NA	False	NA	NA	NA	90804816	90833664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrY_+_90804950_90833554
78055	chr15	+	358	1	FSM	ENSMUSG00000061633.4	ENSMUST00000074608.4	1024	1	654	12	654	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAGCCTCCCTCTGAG	6980	False	NA	NA	False	NA	NA	NA	81865394	81865752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81865400_81865800
78056	chr6	-	300	1	Intergenic	novelGene_4256	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTGCATCTGGGCTGA	NA	False	NA	NA	False	NA	NA	NA	125560815	125560515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_125560500_125560800
78057	chr6	+	175	1	Intergenic	novelGene_4274	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCATTCTTTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	146541789	146541964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_146541800_146542000
78060	chr15	+	481	1	Antisense	novelGene_ENSMUSG00000023169.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTTACAAAAAACAAAAAACC	NA	False	NA	NA	False	NA	NA	NA	96538403	96538884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96538400_96538900
78061	chr1	-	493	1	ISM	ENSMUSG00000100632.2	ENSMUST00000191563.2	1689	2	16255	317	16255	-317	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTCCTCTGGGCCCCTT	NA	False	NA	NA	False	NA	NA	NA	92862057	92861564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_92861600_92862100
78062	chr7	-	322	2	Antisense	novelGene_ENSMUSG00000074224.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCCAGGCAGCCCCTA	3956	False	NA	NA	False	NA	NA	NA	29254601	29218920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_29219040_29254398
78064	chr1	-	376	1	NIC	ENSMUSG00000026028.13	novel	6189	16	NA	NA	0	-27153	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGGGATTCACCCTATCTG	1547	False	NA	NA	False	NA	NA	NA	59012589	59012213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_59012200_59012600
78065	chr5	+	290	1	Intergenic	novelGene_746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCACAGTGAGCTCACCTG	NA	False	NA	NA	False	NA	NA	NA	92231731	92232021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_92231700_92232000
78066	chr11	-	638	2	FSM	ENSMUSG00000084983.8	ENSMUST00000140989.2	563	2	-78	3	-78	-3	multi-exon	FALSE	canonical	0	0	junction_1	0	2	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACATTTCTGTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	120421458	120417683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120418030_120421166
78067	chrX	-	352	1	NIC	ENSMUSG00000025040.14	novel	1983	5	NA	NA	100	-13886	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATCCCCTCGCCCCCTT	NA	False	NA	NA	False	NA	NA	NA	17438392	17438040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_17438000_17438400
78068	chr2	+	584	1	Intergenic	novelGene_2863	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCTGGGGCTCCACAG	NA	False	NA	NA	False	NA	NA	NA	181234675	181235259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_181234700_181235300
78069	chr2	+	337	2	Intergenic	novelGene_2801	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_1	0	1	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGAGTGTTGCTGTATCA	NA	False	NA	NA	False	NA	NA	NA	168823997	168825097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168824158_168824920
78071	chr19	-	416	1	Intergenic	novelGene_1243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCCATCCAAAAATGGAAG	NA	False	NA	NA	False	NA	NA	NA	30007714	30007298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_30007300_30007700
78072	chr10	+	463	1	Intergenic	novelGene_3380	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCCTATGTTACATTCC	NA	False	NA	NA	False	NA	NA	NA	4001295	4001758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_4001300_4001800
78073	chr17	+	292	1	Intergenic	novelGene_308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAATGTCAAGGTTGAA	7629	False	NA	NA	False	NA	NA	NA	85098313	85098605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_85098300_85098600
78077	chr5	+	225	2	Intergenic	novelGene_827	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	16	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTCATTTAGACAGCAG	NA	False	NA	NA	False	NA	NA	NA	114835207	114836746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_114835295_114836608
78080	chr7	+	222	1	ISM	ENSMUSG00000054716.5	ENSMUST00000052509.6	1484	3	10307	1	9394	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACGATGCCTGTAAGTG	5839	False	NA	NA	False	NA	NA	NA	126853752	126853974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_126853800_126854000
78083	chr11	+	301	1	Intergenic	novelGene_2472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTCTTCTGTAAGGGT	9207	False	NA	NA	False	NA	NA	NA	97673359	97673660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_97673400_97673700
78088	chr19	+	355	2	NNC	ENSMUSG00000117979.2	novel	254	2	NA	NA	-31	-19	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	3	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTCCTTTATAACAAAAA	4481	False	NA	NA	False	NA	NA	NA	24533684	24534573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_24533749_24534282
78089	chr4	-	435	1	Intergenic	novelGene_1936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	117046771	117046336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_117046300_117046800
78090	chr17	-	353	1	FSM	ENSMUSG00000117303.2	ENSMUST00000232734.2	1569	1	125	1091	125	-1091	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGATTCAGCCTCCGGG	5161	False	NA	NA	False	NA	NA	NA	28547370	28547017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_28547000_28547400
78091	chr13	-	449	1	Intergenic	novelGene_1370	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCCCAATCCACATCACA	NA	False	NA	NA	False	NA	NA	NA	52798743	52798294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_52798300_52798700
78093	chr9	+	506	1	Intergenic	novelGene_1006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTACTCTTGATTAGC	NA	False	NA	NA	False	NA	NA	NA	31192502	31193008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_31192500_31193000
78094	chr7	-	540	1	FSM	ENSMUSG00000073867.3	ENSMUST00000098110.3	3339	1	-16	2815	-16	-2815	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTTAAGCCATTTCCAATA	5149	False	NA	NA	False	NA	NA	NA	109660548	109660008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_109660000_109660500
78095	chr7	+	176	1	Intergenic	novelGene_2909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCAAAACTTTTCAAAGAG	NA	False	NA	NA	False	NA	NA	NA	28303817	28303993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_28303800_28304000
78096	chr15	+	364	1	Intergenic	novelGene_3350	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCTCAATAAACAGTGATA	NA	False	NA	NA	False	NA	NA	NA	94466397	94466761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_94466400_94466800
78098	chr3	-	204	1	FSM	ENSMUSG00000091405.3	ENSMUST00000171473.3	1630	1	-7	1433	-7	-1433	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACGTCATCCGCGACGCA	1789	False	NA	NA	False	NA	NA	NA	96170634	96170430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_96170400_96170600
78099	chr14	-	248	1	Intergenic	novelGene_580	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGCTGAGACTAGCTGA	NA	False	NA	NA	False	NA	NA	NA	57761848	57761600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_57761600_57761800
78100	chr6	-	586	3	ISM	ENSMUSG00000030206.14	ENSMUST00000087729.12	1307	6	6624	43	6624	-33	3prime_fragment	FALSE	canonical	0	0	junction_2	0.5	2	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATAGGTGTCGCTCACTA	NA	False	NA	NA	False	NA	NA	NA	135218339	135214366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_135214744_135217070_135217183_135218242
78101	chr13	-	265	1	ISM	ENSMUSG00000021460.18	ENSMUST00000137064.8	1258	10	83846	3	77560	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGTGAAGTTATACCAAA	NA	False	NA	NA	False	NA	NA	NA	52989422	52989157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_52989200_52989400
78105	chr1	-	216	1	Intergenic	novelGene_480	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	103	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTGGCCGCTCGCCCA	5502	False	NA	NA	False	NA	NA	NA	170908254	170908038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_170908000_170908300
78106	chrY	+	257	3	Intergenic	novelGene_4718	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTCTTCCCTTAGACCCG	NA	False	NA	NA	False	NA	NA	NA	90751549	90834325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_90751648_90828988_90829120_90834297
78107	chr10	+	314	1	Intergenic	novelGene_3456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATATGATTATGATTTTGG	NA	False	NA	NA	False	NA	NA	NA	62785499	62785813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_62785500_62785800
78108	chr1	-	307	1	Intergenic	novelGene_324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGCCAATGAACATTACAG	NA	False	NA	NA	False	NA	NA	NA	4927812	4927505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_4927500_4927800
78110	chr5	-	325	1	Intergenic	novelGene_694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTTGGTGTTGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	33132434	33132109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_33132100_33132400
78112	chr2	-	578	1	Intergenic	novelGene_2767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAATACCTGTCTATT	3440	False	NA	NA	False	NA	NA	NA	164876329	164875751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_164875800_164876300
78113	chr6	-	368	1	Intergenic	novelGene_4201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTAAAATTATCTCCCTG	NA	False	NA	NA	False	NA	NA	NA	88173939	88173571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_88173600_88173900
78117	chr2	-	347	1	Antisense	novelGene_ENSMUSG00000027255.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTCCTGAAATTCCGGG	3390	False	NA	NA	False	NA	NA	NA	91095504	91095157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_91095200_91095500
78118	chr4	+	364	1	Intergenic	novelGene_1980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGTTCATTTCTCAATG	4745	False	NA	NA	False	NA	NA	NA	133484882	133485246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_133484900_133485200
78121	chr4	+	367	1	FSM	ENSMUSG00000064655.3	ENSMUST00000082721.3	131	1	19	-255	19	255	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGCTGTGGAAGAAATGAA	1425	False	NA	NA	False	NA	NA	NA	123185155	123185522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_123185200_123185500
78128	chr5	+	331	1	NIC	ENSMUSG00000053178.6	novel	1368	2	NA	NA	44	-4910	mono-exon	FALSE	NA	NA	NA	NA	NA	31	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGATTCCGCTACCTTCCC	NA	False	NA	NA	False	NA	NA	NA	4242410	4242741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_4242400_4242700
78130	chr9	-	304	1	Antisense	novelGene_ENSMUSG00000032251.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAAGTGCAAGTACTTGTT	NA	False	NA	NA	False	NA	NA	NA	82711977	82711673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_82711700_82712000
78135	ERCC-00143	+	662	1	FSM	ERCC-00143A	DQ668362	767	1	0	105	0	-105	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATGATCTACGATCCTCG	NA	False	NA	NA	False	NA	NA	NA	0	662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00143_+_0_700
78137	chr5	-	376	1	FSM	ENSMUSG00000106978.2	ENSMUST00000202069.2	2008	1	1623	9	601	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTATTTAAGTTCTTGAA	9152	False	NA	NA	False	NA	NA	NA	65920099	65919723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_65919700_65920100
78138	chr7	+	249	1	Intergenic	novelGene_2954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAACCCAAGGGGGCATT	9499	False	NA	NA	False	NA	NA	NA	43941174	43941423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_43941200_43941400
78141	ERCC-00163	+	505	1	FSM	ERCC-00163A	DQ668359	527	1	0	22	0	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGTCCAGGTCTTGAACGAC	NA	False	NA	NA	False	NA	NA	NA	0	505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00163_+_0_500
78145	chr2	+	352	2	Intergenic	novelGene_2824	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	3	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTTGTCAGGTATTGT	NA	False	NA	NA	False	NA	NA	NA	172668628	172671473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172668700_172671192
78146	chr16	+	457	1	Intergenic	novelGene_3657	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAATTTTAAAGATAG	NA	False	NA	NA	False	NA	NA	NA	44561291	44561748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_44561300_44561700
78147	chr10	-	324	1	Intergenic	novelGene_3517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGTTAATTACCATCT	NA	False	NA	NA	False	NA	NA	NA	95397616	95397292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_95397300_95397600
78148	chr11	-	390	1	FSM	ENSMUSG00000103376.2	ENSMUST00000194862.2	823	1	407	26	407	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CACAAAACGAATAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	95897574	95897184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95897200_95897600
78149	chr5	-	253	2	NNC	ENSMUSG00000106951.2	novel	3994	2	NA	NA	4	5589	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	6	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTCCACGCTTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	148932021	148921276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148921436_148931927
78150	chr2	+	278	1	Intergenic	novelGene_2746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCTTTATTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	155315867	155316145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_155315900_155316100
78151	chr12	-	211	1	Intergenic	novelGene_4464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGGGGGGGAGGAGGG	NA	False	NA	NA	False	NA	NA	NA	108242183	108241972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_108242000_108242200
78152	chr3	+	363	1	Intergenic	novelGene_3097	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATTTGATTTGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	34824529	34824892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_34824500_34824900
78153	chr10	-	299	1	Antisense	novelGene_ENSMUSG00000020020.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTAAGCCCTTCTGCCG	NA	False	NA	NA	False	NA	NA	NA	93684385	93684086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_93684100_93684400
78154	chr9	+	351	1	Antisense	novelGene_ENSMUSG00000059890.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCGACCAAAAGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	44876470	44876821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44876500_44876800
78155	chr14	+	347	1	Intergenic	novelGene_592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGATGTGTGGGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	63851193	63851540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_63851200_63851500
78158	chr16	+	292	1	NIC	ENSMUSG00000022672.9	novel	3063	22	NA	NA	102	-46467	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGACCTTGACAAAAATCC	3627	False	NA	NA	False	NA	NA	NA	15455854	15456146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_15455900_15456100
78159	chr4	+	486	1	ISM	ENSMUSG00000028412.18	ENSMUST00000102911.10	3102	16	181511	69	25819	-69	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATCATAGCTTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	53621923	53622409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_53621900_53622400
78161	chr7	-	501	2	Antisense	novelGene_ENSMUSG00000030523.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAATCTCTTCCTCTTTCT	9033	False	NA	NA	False	NA	NA	NA	63880075	63876526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_63876757_63879804
78166	chr11	+	243	1	Intergenic	novelGene_2449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGCAGGGCAAAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	88832653	88832896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_88832700_88832900
78168	chr9	-	369	1	Intergenic	novelGene_1163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGTAAAAGTGGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	108224924	108224555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_108224600_108224900
78174	chr13	-	430	1	Intergenic	novelGene_1527	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCCTCCCAAAAACCTGAA	6630	False	NA	NA	False	NA	NA	NA	105048270	105047840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_105047800_105048300
78175	chr6	-	258	1	Intergenic	novelGene_4178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGAGGCCTGGCGGGTAA	5252	False	NA	NA	False	NA	NA	NA	65019500	65019242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_65019200_65019500
78177	chr7	+	275	1	Genic_Genomic	ENSMUSG00000030435.17	novel	NA	NA	NA	NA	322	30	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTTCCCCACCGCTCC	2155	False	NA	NA	False	NA	NA	NA	5071350	5071625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_5071400_5071600
78181	chr4	+	252	1	Genic_Genomic	ENSMUSG00000048406.6	novel	NA	NA	NA	NA	-24	-1476	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACATTGAAAAGATGGAGG	NA	False	NA	NA	False	NA	NA	NA	141273475	141273727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_141273500_141273700
78183	chr7	+	385	1	Antisense	novelGene_ENSMUSG00000011751.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTCGCCAGCTGGCGC	NA	False	NA	NA	False	NA	NA	NA	27107529	27107914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_27107500_27107900
78186	chr17	-	296	1	NIC	ENSMUSG00000024042.8	novel	4521	14	NA	NA	827	-3136	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCCCCCTTCCGAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	32073940	32073644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32073600_32073900
78187	chr11	-	200	1	Intergenic	novelGene_2223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTGAGTGAGCTTTAATT	NA	False	NA	NA	False	NA	NA	NA	16450526	16450326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_16450300_16450500
78191	chr7	-	344	3	ISM	ENSMUSG00000039176.18	ENSMUST00000149444.8	4247	23	1454	11093	1344	-1134	internal_fragment	FALSE	canonical	3	224	junction_1	19	1	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGAGCATGCACATGGCC	NA	False	NA	NA	False	NA	NA	NA	79114474	79110403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_79110429_79111445_79111642_79114351
78193	chr13	+	215	1	Intergenic	novelGene_1503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCTCCTCAACAACAAACA	NA	False	NA	NA	False	NA	NA	NA	93329027	93329242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_93329000_93329200
78199	chr7	-	259	1	NIC	ENSMUSG00000097595.3	novel	599	3	NA	NA	51	-41222	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCAGGCTGGCCTGGAAC	NA	False	NA	NA	False	NA	NA	NA	132532781	132532522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_132532500_132532800
78201	chr10	-	225	1	Intergenic	novelGene_3379	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACGATGGAGTCCAT	NA	False	NA	NA	False	NA	NA	NA	3923706	3923481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_3923500_3923700
78204	chr5	-	291	1	Intergenic	novelGene_668	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCTGTTTTGCTGGCA	NA	False	NA	NA	False	NA	NA	NA	23718907	23718616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_23718600_23718900
78206	chr17	+	300	1	Intergenic	novelGene_258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTCTCCTTGCCTTCATC	358	False	NA	NA	False	NA	NA	NA	47630879	47631179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_47630900_47631200
78207	chr10	+	196	1	Genic_Genomic	ENSMUSG00000092593.2	novel	NA	NA	NA	NA	978	6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATACGTTTTGCAAG	NA	False	NA	NA	False	NA	NA	NA	127125360	127125556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_127125400_127125600
78208	chr2	-	266	1	Intergenic	novelGene_2670	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGTCCCACCGGGTCTCA	NA	False	NA	NA	False	NA	NA	NA	92264795	92264529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_92264500_92264800
78211	chr11	-	2948	5	Intergenic	novelGene_2553	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	28.6389158314347	2	91	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121847552	121832052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121834664_121834915_121834966_121836089_121836151_121836329_121836457_121847453
78212	chr14	-	1308	1	Intergenic	novelGene_505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTCGATTTTTGATCTT	NA	False	NA	NA	False	NA	NA	NA	3844243	3842935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_3842900_3844200
78213	chr1	-	7701	44	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	2474	0	intron_retention	FALSE	canonical	0	0	junction_38	477.687674461118	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	71689846	71624681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680354_71681106_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720
78214	chr1	-	8165	46	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	0	-145	intron_retention	FALSE	canonical	3	40	junction_5	459.256181232218	55	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACGGAAAAAATTGTATTG	NA	False	NA	NA	False	NA	NA	NA	71692331	71624829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632391_71634818_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
78215	chr12	+	3599	2	Intergenic	novelGene_4389	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	72	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605044	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68608537_68610165
78217	chrX	+	493	1	FSM	ENSMUSG00000059461.8	ENSMUST00000118642.2	387	1	-31	-75	-31	75	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACACTGTC	NA	False	NA	NA	False	NA	NA	NA	161349821	161350314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161349800_161350300
78218	chr8	+	4508	26	NNC	ENSMUSG00000031753.17	novel	2442	19	NA	NA	-36352	-3500	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	111	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGACGGGCCTTCGGGT	36	False	NA	NA	False	NA	NA	NA	111536879	111573405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111537708_111538014_111538125_111538607_111538754_111539596_111539694_111540256_111540468_111541161_111541288_111542534_111542692_111542786_111542990_111544171_111544350_111547337_111547495_111548101_111548230_111550012_111550150_111550795_111550953_111552133_111552293_111552726_111552879_111558115_111558187_111560409_111560508_111562180_111562347_111563923_111564023_111564844_111564984_111566505_111566619_111567743_111567886_111568404_111568573_111569316_111569646_111571093_111571232_111573306
78219	chr8	-	7598	49	NNC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	1	4	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_18	311.096665013688	1819	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGAAACTTCTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	96534089	96446779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467608_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
78220	chr1	-	5279	13	ISM	ENSMUSG00000026193.16	ENSMUST00000055226.13	8315	46	48090	0	-2241	0	intron_retention	FALSE	canonical	3	2104	junction_10	253.313157091288	18	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGTGGACGTCATTTC	8975	False	NA	NA	False	NA	NA	NA	71644244	71624682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468
78221	chr15	-	8795	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	-7	15	-7	-15	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	827	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCAAATATGGATCTTG	NA	False	NA	NA	False	NA	NA	NA	103148250	103099985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
78222	chr5	+	2175	3	ISM	ENSMUSG00000029249.16	ENSMUST00000113449.2	6924	4	1738	4529	1738	-4529	3prime_fragment	FALSE	canonical	3	814	junction_1	39.5	5	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGAGCCTTCCCAGAAGG	6139	False	NA	NA	False	NA	NA	NA	77415780	77429750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_77416671_77423080_77423165_77428549
78223	chr11	-	6938	32	FSM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	-75	-344	-75	344	multi-exon	TRUE	canonical	3	813	junction_25	122.673691341487	1090	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTCCCTTAATAGAAAC	NA	False	NA	NA	False	NA	NA	NA	86648466	86584832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
78224	chrX	+	860	6	FSM	ENSMUSG00000095180.11	ENSMUST00000184866.10	893	6	33	0	33	0	multi-exon	FALSE	canonical	3	2792	junction_1	493.533626007388	16117	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8538	False	NA	NA	False	NA	NA	NA	36891668	36897308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
78225	chr10	+	1491	1	Intergenic	novelGene_3383	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGGTTAGTAAAGATCTT	3708	False	NA	NA	False	NA	NA	NA	4391237	4392728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_4391200_4392700
78226	chr11	-	4910	13	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	3	497	junction_12	1033.14636413348	4	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	8972	False	NA	NA	False	NA	NA	NA	106680002	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
78227	chr5	+	4695	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-5091	376	intron_retention	FALSE	canonical	0	0	junction_4	669.392660053375	16	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATACCTTCCTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	108208448	108257246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
78228	chr11	-	853	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	11	-3	11	3	multi-exon	FALSE	canonical	3	9692	junction_2	172	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGTGTTGGTTTGCAC	NA	False	NA	NA	False	NA	NA	NA	70545459	70542672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
78229	chr18	-	4272	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	-3	137	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	1564.51365745876	34	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCAGGTTCATACTGTTC	196	False	NA	NA	False	NA	NA	NA	35087413	35071182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082611_35082756_35084459_35085448_35085537_35085729_35085789_35087222
78230	chr19	-	4474	27	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24168	-6560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	125	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCCTGAGACACGTTGCA	NA	False	NA	NA	False	NA	NA	NA	10607186	10582955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583403_10584208_10584356_10585154_10585271_10585611_10585835_10588060_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439
78235	chr11	-	8438	43	FSM	ENSMUSG00000025153.10	ENSMUST00000055655.9	10050	43	382	1230	-70	29	multi-exon	TRUE	canonical	3	375	junction_39	98.8392726301593	875	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGCCTTCGGTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	120714991	120697901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120698818_120698900_120699153_120699327_120699427_120699544_120699766_120699850_120700079_120700251_120700441_120700629_120700876_120700955_120701108_120701262_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705302_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707058_120707130_120707304_120707447_120707564_120707672_120707877_120707950_120708086_120708298_120708394_120708811_120709002_120709258_120709447_120709563_120710027_120710628_120710764_120710854_120710971_120711070_120711194_120711357_120711559_120711724_120711899_120712903_120713057_120713542_120713679_120714855
78236	chr17	-	1475	10	NNC	ENSMUSG00000024118.15	novel	2166	10	NA	NA	-3	-9	intron_retention	FALSE	canonical	3	10	junction_1	87.443667933867	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGCTGGAGAGATGGCTT	3334	False	NA	NA	False	NA	NA	NA	24439767	24434221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24434463_24434559_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24439225_24439285_24439490_24439590_24439664
78237	chr18	+	5248	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26716	1910	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	1462	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6369	False	NA	NA	False	NA	NA	NA	77126187	77243406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
78238	chr13	+	4263	7	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	-6348	3187	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	16.327379867368	5	101	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCAATATTGGCTAATAT	NA	False	NA	NA	False	NA	NA	NA	61796768	61894771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61796888_61803120_61803248_61803432_61803494_61804858_61805998_61891703_61892812_61892978_61893406_61893489
78239	chr4	+	3075	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5_ENSMUSG00000066007.16	novel	4244	5	NA	NA	18	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	37.0683978032836	1	69	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146093411	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093469_146207051_146207223_146207708_146207846_146291416_146291510_146365127_146365259_146368115_146368209_146384326_146384431_146388486_146388614_146390758_146390904_146391317_146392124_146392460_146393443_146552619
78240	chr4	+	3373	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-33	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	127.762366220348	12	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576840	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147598049_147598133_147598301_147599053
78241	chr11	+	6370	23	FSM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	13	0	13	0	multi-exon	FALSE	canonical	3	430	junction_20	39.4256282802095	809	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGTTTGGATGGCT	NA	False	NA	NA	False	NA	NA	NA	45946831	46038170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
78242	chr7	+	668	2	Genic_Genomic	ENSMUSG00000046721.12	novel	653	1	NA	NA	-5	48	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	44974383	44975089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_44974684_44974721
78244	chr6	+	8080	16	NNC	ENSMUSG00000030213.13	novel	3018	9	NA	NA	-142	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	69.8555334641112	526	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAACATTCTGAGTACCCT	8708	False	NA	NA	False	NA	NA	NA	136509782	136587838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_136510052_136536761_136538438_136540757_136540836_136542014_136542161_136543645_136543784_136548470_136548537_136552242_136552317_136559375_136559465_136564042_136564682_136570073_136570145_136573432_136573512_136576647_136576804_136580282_136580466_136582379_136582493_136583471_136584360_136584423
78245	chr13	+	4191	4	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	3	3045	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	2.35702260395516	2	111	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTTCTGTTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	61803119	61894629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61803248_61804858_61806131_61891756_61893276_61893357
78246	chr9	+	1757	5	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	8481	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	733.280769896497	1	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTTTCTAAATTTCCTG	NA	False	NA	NA	False	NA	NA	NA	108192508	108215120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108192586_108204782_108204941_108208073_108208191_108212249_108212381_108213846
78248	chr11	-	4148	28	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	-13	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	780.729058525292	20	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAATGGCGTGATGCTCT	NA	False	NA	NA	False	NA	NA	NA	100418708	100367187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372266_100372562_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
78249	chr14	-	6773	17	Antisense	novelGene_ENSMUSG00000021767.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	111	69	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGACTTCCTCCAAGAAG	NA	False	NA	NA	False	NA	NA	NA	21722201	21531501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21531622_21566693_21567565_21659819_21659930_21668957_21669074_21669283_21669366_21672020_21672156_21674900_21674954_21676783_21676907_21678878_21678995_21681387_21681530_21684541_21684699_21687609_21687709_21710810_21711039_21711493_21711654_21712220_21712552_21714689_21714817_21718398
78250	chr12	-	1759	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	348	3	42	0	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	2	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	21467089	21440332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
78251	chr6	-	1352	3	ISM	ENSMUSG00000003153.11	ENSMUST00000168801.2	418	4	218	-830	43	771	3prime_fragment	FALSE	canonical	3	10026	junction_1	359.5	170	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTAAGGGTCATATGCT	9859	False	NA	NA	False	NA	NA	NA	122719661	122716020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122716953_122717346_122717440_122719334
78252	chr4	+	3701	9	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-21	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	130.439581320242	68	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145397233	145431010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145406465_145406546_145422723_145422806_145425800_145425941_145427474_145428318_145428486_145428830_145428912_145429413_145429575
78253	chrX	-	2676	10	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-9	-84	intron_retention	FALSE	non_canonical	0	0	junction_2	571.875752714879	1	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATGTAATGATGTATCG	NA	False	NA	NA	False	NA	NA	NA	158921361	158905288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907661_158910291_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913228_158915064_158915239_158916168_158916229_158921251
78254	chrX	-	2465	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	117	266	13	-266	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	2	66	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGAAATTTACCTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	158921292	158905470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
78255	chr18	+	5387	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	-35	910	-15	-910	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	2002	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCTGTTACAATGTTGAA	NA	False	NA	NA	False	NA	NA	NA	35695175	35725978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
78256	chr18	+	5244	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26714	1908	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	1556	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGAGTCTGACATTGAT	6371	False	NA	NA	False	NA	NA	NA	77126189	77243404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
78257	chr5	+	7200	45	NIC	ENSMUSG00000013629.17	novel	7137	44	NA	NA	-12	0	combination_of_known_junctions	TRUE	canonical	3	63	junction_35	184.37253850437	799	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	7041	False	NA	NA	False	NA	NA	NA	31212111	31235823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31232814_31232866_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
78258	chr4	-	2509	13	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	2	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	296.274963786457	32	86	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTACTTAAAATTATACAGA	NA	False	NA	NA	False	NA	NA	NA	122779651	122752895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758967_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
78259	chr5	+	4372	15	FSM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	-94	-218	-26	218	multi-exon	FALSE	canonical	0	0	junction_3	595.009556603068	73	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTGTTTATGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	108213513	108257088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
78262	chr5	-	3884	16	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45624	intron_retention	TRUE	non_canonical	0	0	junction_1	0	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCAATGACTATTACAAGA	NA	False	NA	NA	False	NA	NA	NA	108256654	108208607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239023_108239165_108239925_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
78263	chrM	+	1050	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	94	0	94	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	92	False	NA	-29	True	NA	NA	NA	14238	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
78264	chr7	-	8120	38	FSM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	140	-816	-4	816	multi-exon	FALSE	canonical	3	539	junction_37	55.7931586507513	600	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAAGTTGGATATGGAAAA	NA	False	NA	NA	False	NA	NA	NA	80453024	80360514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80363694_80366758_80366868_80370616_80370740_80372709_80372877_80373526_80373740_80375334_80375423_80375713_80375850_80376486_80376590_80377700_80377834_80378596_80378830_80379816_80379902_80379989_80380131_80383733_80383959_80385221_80385386_80386009_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
78265	chr1	+	9138	35	FSM	ENSMUSG00000041642.19	ENSMUST00000075164.11	9115	35	-20	-3	-20	3	multi-exon	FALSE	canonical	3	43	junction_3	11.0094328853373	192	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGGCTAGTGGGTTGGT	6154	False	NA	NA	False	NA	NA	NA	136059106	136105739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_136059501_136072336_136072560_136072867_136073051_136075235_136075386_136075471_136075607_136075944_136076116_136076363_136076480_136076998_136077195_136078868_136079059_136079780_136079845_136079934_136080154_136080495_136080578_136080930_136081049_136081841_136082034_136083834_136084035_136085200_136085309_136086018_136086088_136086981_136087215_136087375_136087524_136087750_136087946_136088041_136088144_136089143_136089310_136089466_136089519_136089701_136089760_136090524_136090731_136090810_136090889_136092755_136092870_136094899_136094939_136096924_136097062_136097726_136097908_136098879_136099045_136099325_136099444_136099896_136100068_136100540_136100741_136101774
78266	chr5	+	4061	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	0	intron_retention	FALSE	non_canonical	0	0	junction_4	696.838653760682	1	56	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108239959_108240007_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
78267	chr10	+	3856	9	NIC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-55	2349	intron_retention	FALSE	non_canonical	0	0	junction_8	1839.54632654359	71	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCCAAGCCACCCAAACC	NA	False	NA	NA	False	NA	NA	NA	126899347	126906138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797_126905383_126905983
78268	chr5	-	4393	11	NIC	ENSMUSG00000029405.17	novel	3026	12	NA	NA	168	63	combination_of_known_junctions	FALSE	canonical	3	7	junction_10	525.021675743012	5	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGATAAACAGCTTGAACCA	NA	False	NA	NA	False	NA	NA	NA	92230929	92199941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92230608
78269	chrM	+	898	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	58	1	58	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATATGTCTGATAAAAGA	56	False	NA	-94	True	NA	NA	NA	2808	3706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
78270	chr14	-	7358	26	FSM	ENSMUSG00000035726.9_ENSMUSG00000053754.15	ENSMUST00000046709.9	4673	26	-2685	0	2495	0	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	1192	56	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTTATGACCATTT	NA	False	NA	NA	False	NA	NA	NA	52437558	52397870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
78271	chr13	+	2423	5	NIC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	-3	5652	intron_retention	FALSE	canonical	3	116	junction_1	60.3386277603328	1	86	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAACCAGAATTTAGGAAT	NA	False	NA	NA	False	NA	NA	NA	55359628	55394312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_55359814_55361016_55361964_55381707_55381844_55386502_55386676_55393330
78272	chr7	-	906	4	NIC	ENSMUSG00000061787.16	novel	383	5	NA	NA	0	-1	intron_retention	FALSE	canonical	3	8882	junction_3	2020.94301420566	69	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGTCTGTATTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	80994975	80992481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80992598_80993482_80993549_80994058_80994757_80994949
78273	chr8	+	4250	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	234	-2095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1177.69773291511	16	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111760781	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770278_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777373_111777502_111778000_111778905_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
78274	chr8	-	3567	18	Intergenic	novelGene_1747	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.941176470588235	8	44	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCCTCAGATGCGCACAA	NA	False	NA	NA	False	NA	NA	NA	111779887	111760574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760895_111763539_111763704_111766761_111766951_111767226_111767374_111768108_111768299_111768869_111769016_111769292_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777705_111777808_111778002_111778906_111779152_111779820
78275	chr9	-	5626	8	FSM	ENSMUSG00000036986.17	ENSMUST00000153820.8	2652	8	1	-2975	1	1	multi-exon	FALSE	canonical	3	249	junction_3	51.5692520316326	362	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGATTGCAATCTCTAC	2152	False	NA	NA	False	NA	NA	NA	58157068	58125357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
78276	chr14	+	4763	21	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	-17	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	482.980962357731	31	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTGTGGTCTAAATATC	NA	False	NA	NA	False	NA	NA	NA	19801315	19861852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852536_19852632_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
78277	chr19	+	3630	24	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	3050	-3	2035	3	3prime_fragment	FALSE	canonical	3	2606	junction_1	258.980347547606	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	3420	False	NA	NA	False	NA	NA	NA	10585740	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
78278	chr2	+	6652	13	FSM	ENSMUSG00000033411.17	ENSMUST00000036647.13	5053	13	80	-1679	80	1679	multi-exon	FALSE	canonical	3	334	junction_9	41.0940655353327	401	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTTGATGACATTTTT	NA	False	NA	NA	False	NA	NA	NA	121786561	121845802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
78279	chr11	-	4996	11	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	3830	junction_6	142.502245596341	271	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9654	False	NA	NA	False	NA	NA	NA	106679320	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
78280	chr2	+	4248	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	13	-55	13	55	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	606	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTAGTTTTCATAGGA	NA	False	NA	NA	False	NA	NA	NA	152068771	152123827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
78281	chrX	-	2779	22	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.0647942749999	1	27	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGACACAAGATGGCGGC	NA	False	NA	NA	False	NA	NA	NA	20548440	20529183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20529364_20534686_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545021_20545626_20545635_20547559_20547751_20548138_20548242_20548345
78282	chr12	+	2446	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	-62	0	-14	0	multi-exon	FALSE	canonical	3	142	junction_2	4	129	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5284	False	NA	NA	False	NA	NA	NA	110704363	110761462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110704712_110745729_110745913_110759547
78284	chr8	+	1303	6	NNC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-16	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	421.307013945887	35	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATGTGTATGAGTATTT	NA	False	NA	NA	False	NA	NA	NA	86026244	86034702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_86026622_86027737_86027868_86029987_86030081_86031837_86031951_86032845_86032948_86034214
78286	chr4	-	4621	12	Antisense	novelGene_ENSMUSG00000096440.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	14.3238805398191	600	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTCCTGACCACGAGG	NA	False	NA	NA	False	NA	NA	NA	147610209	147576901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147577008_147592040_147592096_147595207_147595336_147596800_147597366_147597449_147597581_147597915_147598238_147598905_147599125_147599375_147599762_147599863_147601323_147601745_147602214_147602746_147603388_147610068
78287	chr4	+	2598	4	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	51	-36	multi-exon	FALSE	canonical	3	27	junction_1	32.782108941718	1	99	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAACTAACTCCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	147576924	147669619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147661528_147661587_147665698_147665826_147667290
78288	chr12	-	2824	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-19	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4042.49604205125	4	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTGTGGAATGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	110662742	110657465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659224_110659313_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
78289	chrX	+	7129	14	NNC	ENSMUSG00000001127.13	novel	705	6	NA	NA	1126	-7	intron_retention	FALSE	non_canonical	1	1	junction_1	111.774815890949	348	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGGCCTTTGCTTGTT	7445	False	NA	NA	False	NA	NA	NA	20715953	20726751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20716024_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20719699_20719798_20719827_20719915_20720056_20720151_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
78290	chr8	+	8118	26	Intergenic	novelGene_1758	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	288	12	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCGACGCACCCGCCGG	NA	False	NA	NA	False	NA	NA	NA	111879953	111985842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_111884692_111886428_111886540_111887252_111887373_111888056_111888166_111888998_111889101_111889269_111889413_111890402_111890527_111892188_111892326_111895289_111895386_111896119_111896237_111897860_111897954_111899049_111899160_111899832_111899899_111900867_111900952_111904275_111904415_111905464_111905617_111907564_111907668_111909161_111909285_111914345_111914563_111915300_111915483_111917821_111917894_111919155_111919359_111924223_111924443_111926769_111926855_111928157_111928191_111985402
78291	chrX	+	1565	4	NIC	ENSMUSG00000008682.14	novel	648	7	NA	NA	0	-9	intron_retention	FALSE	canonical	3	9221	junction_1	230.206187772807	33	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGCTTATGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73314462	73316732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73315514_73315784_73315924_73316277_73316441_73316520
78292	chr18	-	3850	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	76	54	0	-5	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	62	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTTTGGGCCATGTTAT	NA	False	NA	NA	False	NA	NA	NA	42395183	42335416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
78293	chr16	-	6243	9	NIC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	0	674	intron_retention	FALSE	canonical	3	646	junction_8	531.987297193269	30	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAATCTATTTCTCAAAT	NA	False	NA	NA	False	NA	NA	NA	22084676	22064523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22078012_22084490
78294	chr4	+	2712	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	50	234	18	-234	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	958	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	944	False	NA	NA	False	NA	NA	NA	145237378	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
78295	chr10	-	7845	10	FSM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	-267	3	-267	-3	multi-exon	TRUE	canonical	3	31	junction_9	46.8506953451172	452	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGGAGTGTCTGTCTCT	5059	False	NA	NA	False	NA	NA	NA	68114837	67928352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_68021855_68022087_68078833_68079060_68113759_68114015_68114519
78296	chr13	+	977	1	Intergenic	novelGene_1317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCTTTTATGGAGATAA	NA	False	NA	NA	False	NA	NA	NA	12796453	12797430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_12796500_12797400
78297	chr2	-	5994	18	NIC	ENSMUSG00000006800.15	novel	4580	21	NA	NA	21594	701	intron_retention	FALSE	canonical	3	773	junction_14	59.6735641306547	19	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAATGACCCAAAAAAGA	8350	False	NA	NA	False	NA	NA	NA	165974749	165914307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507
78298	chr19	-	5675	22	FSM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-95	-455	-80	455	multi-exon	FALSE	canonical	0	0	junction_17	309.066534016512	1951	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTACTGGTGTTTTGTT	8659	False	NA	NA	False	NA	NA	NA	60779176	60749099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
78299	chr14	+	799	4	NNC	ENSMUSG00000012405.17	novel	802	4	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4675.21310268907	4	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	4198713	4200736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_4198852_4199235_4199418_4199652_4199804_4200408
78300	chr17	-	2214	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	-11	-403	-11	-2	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	517	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCTTGTCAGTGAG	NA	False	NA	NA	False	NA	NA	NA	13179269	13161926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
78301	chr11	+	5730	19	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	33	-4	intron_retention	FALSE	canonical	0	0	junction_9	116.591946972188	27	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTTCTCTGTTTGGAT	NA	False	NA	NA	False	NA	NA	NA	45946851	46038166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46022572_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
78302	chr3	+	4388	9	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	52	-2	intron_retention	FALSE	canonical	3	910	junction_4	50.4256878981338	1964	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACAAAAAAAGGGACTTCA	NA	False	NA	NA	False	NA	NA	NA	105866736	105877351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873742_105874478
78303	chr4	+	3072	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-4	2571	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	131.344737237546	2	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTACAAGGTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	147576869	147600514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578892_147595254_147595337_147596801_147597216_147597299_147598217_147599053
78304	chr12	-	2805	12	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	73	-5	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_10	5183.47018483031	30	42	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTGTGGAATGTGTCT	NA	False	NA	NA	False	NA	NA	NA	110669089	110657466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110668789_110668853_110669056
78305	chr16	+	4118	8	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-108	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1795.18696655751	34	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	84571165	84622816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84606227_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
78306	chr5	-	4410	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	19	-9	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_18	143.423797894454	17	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAGAAAGTATTTAGAAC	NA	False	NA	NA	False	NA	NA	NA	31337234	31313873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31336590
78307	chr13	+	5366	4	FSM	ENSMUSG00000074867.5	ENSMUST00000099449.4	2571	4	-14	-2781	0	2781	multi-exon	FALSE	canonical	3	81	junction_1	97.7422915403335	427	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAATTTCGTTTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	62277715	62324014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963
78308	chr15	-	6480	39	NNC	ENSMUSG00000036606.18	novel	6497	38	NA	NA	-3438	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_38	84.6279007121609	521	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGACTGGGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	89058329	89039753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89040381_89040458_89040589_89040700_89040776_89041195_89041272_89041388_89041454_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050210_89050568_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89055269_89055320_89058142
78309	chr2	-	6119	14	Intergenic	novelGene_2641	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	576	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCAGGGATGGGTGCCGG	1676	False	NA	NA	False	NA	NA	NA	69584353	69553153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_69553300_69562087_69562156_69562538_69562616_69562720_69562796_69563158_69563267_69563529_69563576_69564632_69564723_69566211_69566241_69566331_69566472_69571828_69572035_69573953_69574124_69576370_69576459_69579303_69579442_69579615
78310	chr15	-	4356	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	0	515	0	296	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	858	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCATCCTCAGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	38519510	38488185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
78311	chr7	+	2959	21	Antisense	novelGene_ENSMUSG00000088948.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGAGGCGTGTCTGAAGCC	NA	False	NA	NA	False	NA	NA	NA	110671889	110682213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671988_110673019_110673157_110673243_110673457_110673546_110673752_110673886_110674149_110674234_110674448_110674542_110674649_110674793_110674920_110675902_110676061_110676141_110676283_110676430_110676533_110676617_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678605_110679395_110679530_110680105_110680172_110680713_110680840_110681990
78312	chr6	+	6545	39	NIC	ENSMUSG00000063870.13	novel	6537	39	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_3	119.03378323504	659	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTGGTTCTGTGTGGG	1742	False	NA	NA	False	NA	NA	NA	125073077	125107554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125073224_125074049_125074229_125077430_125077553_125077740_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079433_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
78313	chr1	-	5477	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	-29	-897	-29	897	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	772	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACAGTGTACTCACAT	NA	False	NA	NA	False	NA	NA	NA	79739515	79679081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
78314	chr11	+	1738	5	Antisense	novelGene_ENSMUSG00000098955.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7300	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGGGCGTCGTCGCCAG	13	True	NA	NA	False	NA	NA	NA	120236521	120238833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120237362_120237464_120237649_120237740_120238178_120238463_120238701_120238793
78315	chr3	-	3806	20	ISM	ENSMUSG00000002227.16	ENSMUST00000166979.8	3584	21	17	-4	17	4	intron_retention	FALSE	canonical	3	1102	junction_11	86.7727314610285	2281	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104725862	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
78316	chr1	+	6049	17	Antisense	novelGene_ENSMUSG00000099141.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	25	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTAGGAGTGCAGCAGTC	NA	False	NA	NA	False	NA	NA	NA	77343822	77491724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77346308_77349545_77350485_77351407_77351564_77354050_77354241_77357496_77357653_77359506_77359716_77360159_77360219_77364430_77364622_77365110_77365222_77366667_77366729_77375130_77375243_77376274_77376433_77377833_77377962_77403187_77403489_77483270_77483849_77488319_77488388_77491577
78317	chr7	+	9519	11	Intergenic	novelGene_3047	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	386	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTCCATCTTCATAC	NA	False	NA	NA	False	NA	NA	NA	135291526	135312620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_135291865_135294810_135295231_135295963_135302796_135303629_135303786_135305795_135305969_135306067_135306187_135306271_135306524_135307337_135307515_135309089_135310050_135310494_135310542_135312575
78318	chr16	+	4264	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	44	4	12	-4	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	37	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATACAAAGAATTCCAT	NA	False	NA	NA	False	NA	NA	NA	32698194	32729241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
78319	chrM	+	1977	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-153	0	153	mono-exon	FALSE	NA	NA	NA	NA	NA	1	129	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATTAATTACTCCAACT	-4	True	NA	4	True	NA	NA	NA	11741	13718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13700
78320	chr14	+	4519	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-15	40	at_least_one_novel_splicesite	FALSE	canonical	2	75	junction_24	242.151014038761	2082	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAATGAAATGGATTTT	1816	False	NA	NA	False	NA	NA	NA	121148620	121185451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183542_121183631_121184130
78322	chr11	+	7707	41	FSM	ENSMUSG00000020900.16	ENSMUST00000102611.10	7791	41	77	7	77	1	multi-exon	TRUE	canonical	3	123	junction_6	27.8530855561821	304	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCTGCTTCCGCA	NA	False	NA	NA	False	NA	NA	NA	68582817	68707451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68583009_68590035_68590412_68612145_68612303_68625213_68625242_68636142_68636246_68642767_68642861_68650571_68650636_68651478_68651578_68653336_68653481_68653663_68653760_68655061_68655181_68655866_68656020_68659024_68659199_68661709_68661884_68662697_68662813_68673931_68674126_68674208_68674331_68675752_68675823_68676021_68676183_68676443_68676553_68676650_68676783_68678163_68678371_68680930_68681069_68681442_68681567_68682688_68682861_68683881_68684095_68688157_68688303_68689075_68689283_68691640_68691746_68692402_68692556_68692933_68693183_68693665_68693879_68695452_68695666_68697950_68698113_68699618_68699748_68700985_68701075_68702426_68702551_68702622_68702832_68703794_68703904_68705207_68705381_68705752
78323	chr16	+	1290	10	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-107	125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1690.99425059802	2	13	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAATGGCTTATGTGTT	NA	False	NA	NA	False	NA	NA	NA	84571166	84620043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571253_84571410_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
78324	chr16	+	1240	10	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-1	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1921.25840962199	1	74	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTCTTACACTTGCAA	NA	False	NA	NA	False	NA	NA	NA	84571009	84619770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571321_84571404_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609992_84612069_84612157_84613153_84613285_84618147_84618191_84619674
78325	chr14	-	1095	6	NIC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_5	1674.27851924344	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	NA	NA	NA	31923836	31902118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31923599
78326	chr16	-	1126	8	Antisense	novelGene_ENSMUSG00002076438.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAACCCTGCAGGTCGGCC	1804	False	NA	NA	False	NA	NA	NA	84619763	84571044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_84571440_84598449_84598525_84603720_84603828_84606226_84606381_84609782_84609964_84613204_84613281_84618141_84618191_84619674
78327	chr3	+	6530	18	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	30	386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	109.205656595828	227	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATCTTGGGTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	88682552	88733280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88682582_88684290_88684822_88691614_88691807_88695643_88695746_88696664_88696715_88706913_88707026_88715213_88715413_88715862_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725069_88726976_88727094_88727354_88729107_88730848_88731105_88731656_88731842_88732696
78328	chr1	-	7042	28	FSM	ENSMUSG00000026478.15	ENSMUST00000027752.15	7622	28	579	1	579	-1	multi-exon	TRUE	canonical	3	518	junction_2	111.881330429904	554	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTGTGTGGCCTAAAT	NA	False	NA	NA	False	NA	NA	NA	153207953	153094668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_153097476_153099404_153099505_153102129_153102289_153103256_153103457_153104480_153104596_153104787_153104938_153106467_153106613_153107479_153107618_153109230_153109311_153110193_153110400_153115000_153115158_153116062_153116242_153117622_153117766_153118374_153118529_153118976_153119223_153122683_153122873_153122982_153123205_153124785_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822_153126941_153127697_153127887_153130934_153131102_153133821_153133953_153138135_153138441_153207873
78329	chr1	-	4470	28	NNC	ENSMUSG00000026478.15	novel	7622	28	NA	NA	509	-2664	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	275.484533858185	2	57	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGACTATAACCGGGACATA	NA	False	NA	NA	False	NA	NA	NA	153208023	153097331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_153097476_153099404_153099496_153102129_153102289_153103256_153103457_153104480_153104553_153104718_153104938_153106467_153106613_153107479_153107618_153109230_153109315_153110193_153110400_153115000_153115158_153116062_153116242_153117622_153117766_153118374_153118529_153118976_153119223_153122683_153122873_153122982_153123205_153124785_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822_153126941_153127697_153127887_153130934_153131102_153133821_153133953_153138135_153138441_153207873
78330	chr18	-	3866	24	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	35	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	478.923963245616	1	206	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGACTTTAAATATAAAG	NA	False	NA	NA	False	NA	NA	NA	60981955	60946845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961642_60961739_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968966_60970960_60971022_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
78331	chr1	+	4283	13	FSM	ENSMUSG00000026276.21	ENSMUST00000027495.15	3779	13	-505	1	-505	-1	multi-exon	FALSE	canonical	3	766	junction_1	78.56892762975	2677	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGATTTTTACGTTTTT	NA	False	NA	NA	False	NA	NA	NA	93406180	93437981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_93406791_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
78333	chr11	-	5191	17	NIC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-13	0	intron_retention	FALSE	canonical	3	534	junction_10	61.1933411410098	20	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	NA	False	NA	NA	NA	40624262	40592221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40615748_40619253_40619334_40619948_40620048_40624140
78336	chr6	-	3958	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	-1	3	-1	-3	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	1399	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGATGCTGCTCATAGAA	4147	False	NA	NA	False	NA	NA	NA	35516824	35485843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
78337	chr2	+	3539	31	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_25	330.923448683965	1964	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	146854934	146919920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876749_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146901350_146901451_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
78338	chr7	-	4799	7	NNC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	302.330209465669	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCCATGCCTAAAGCACAA	NA	False	NA	NA	False	NA	NA	NA	118454907	118441460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118441750_118441917_118445318_118447671_118447798_118449843_118449913_118451625_118451927_118452011_118452564_118454845
78339	chrX	-	4021	10	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAAGAGCGCGCGACCG	NA	False	NA	NA	False	NA	NA	NA	100492186	100473309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100473367_100474096_100474157_100480812_100480984_100483092_100483286_100485120_100486632_100486900_100487097_100487881_100487966_100488291_100488939_100489719_100489834_100491198
78340	chr16	+	4238	8	FSM	ENSMUSG00000022800.15	ENSMUST00000232300.2	2262	8	6	-1982	0	-449	multi-exon	FALSE	canonical	3	485	junction_4	66.7529713471503	1564	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGTAGTTTTGTGGTATT	NA	False	NA	NA	False	NA	NA	NA	32698182	32728796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32719310_32721002_32721078_32722788_32722916_32725901
78341	chrX	-	3955	11	NNC	ENSMUSG00000031232.18	novel	4115	11	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_1	66.0984871233828	83	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105055382	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105014596_105015041_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
78342	chr4	-	3280	17	FSM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	36	0	36	0	multi-exon	FALSE	canonical	2	1390	junction_12	381.614124271823	3154	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	-3	True	NA	NA	False	NA	NA	NA	43000471	42979962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
78343	chr9	+	6250	34	NIC	ENSMUSG00000037286.16	novel	3857	26	NA	NA	-102	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_1	68.4680054375402	371	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTGGTTATCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	100479748	100840597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_100480163_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
78344	chr16	-	3304	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	79	206	79	7	multi-exon	FALSE	canonical	3	1276	junction_6	130.715909088714	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGGTTTAAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	15455185	15441966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
78345	chr16	-	3285	17	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	33	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	379.752833885081	25	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAATACTTGGTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	15455231	15441971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442261_15442320_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
78346	chrX	+	2923	11	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	-5	intron_retention	FALSE	canonical	3	3075	junction_4	309.965175463309	36	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488941_100489724_100489835_100491199
78347	chr12	+	4408	2	Intergenic	novelGene_4397	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	166	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGAGTAACTGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	68605182	68610266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68609385_68610060
78348	chr6	-	3173	11	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	-22	intron_retention	FALSE	canonical	0	0	junction_1	2180.54453061615	28	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAAATATACCTTACTA	NA	False	NA	NA	False	NA	NA	NA	51446874	51437933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438962_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
78349	chr5	-	5944	28	FSM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	-11	-1480	5	1477	multi-exon	FALSE	canonical	3	318	junction_10	27.4864725426801	628	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATTTTATGGGAGTTG	NA	False	NA	NA	False	NA	NA	NA	108777616	108715799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
78350	chr9	-	6149	2	FSM	ENSMUSG00000032244.10	ENSMUST00000034775.10	6785	2	626	10	626	-10	multi-exon	FALSE	canonical	3	242	junction_1	0	476	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGTACCTTGAAGTT	NA	False	NA	NA	False	NA	NA	NA	62718590	62699112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_62705011_62718339
78351	chr2	+	4452	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	-224	-794	-224	794	multi-exon	TRUE	canonical	3	956	junction_9	74.1082057489866	1825	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAAATACTCTATCTTCC	NA	False	NA	NA	False	NA	NA	NA	146854691	146920714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
78352	chr9	-	3682	18	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	29	936	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_17	428.551596179778	2394	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACAGAACTACTGCCTAG	NA	False	NA	NA	False	NA	NA	NA	36678841	36642785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678750
78353	chr16	-	2574	16	FSM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	255	1070	-25	-619	multi-exon	FALSE	canonical	3	902	junction_2	81.6059366032208	2	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGAGGGGCCCTAGGCCC	2528	False	NA	NA	False	NA	NA	NA	21981794	21878828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
78354	chr9	+	394	3	NIC	ENSMUSG00000032294.18	novel	743	6	NA	NA	-44	-2210	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	81	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACCTGATCACTGGGCC	1825	False	NA	NA	False	NA	NA	NA	59563811	59570440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_59563933_59566281_59566437_59570322
78355	chr10	+	6072	10	Antisense	novelGene_ENSMUSG00000055531.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	69	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGTGGGGGCGGGGCGCC	NA	False	NA	NA	False	NA	NA	NA	117180644	117212875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117185375_117191841_117192030_117194897_117195055_117196347_117196460_117196759_117197011_117198050_117198093_117198879_117199026_117201985_117202090_117203683_117203893_117212742
78356	chr5	+	1216	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	94	-22	-94	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	28	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTGTTTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
78360	chr16	+	4473	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	14	0	14	0	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	1101	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAAGTATTTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	43960229	43983729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
78361	chr15	-	2599	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	21	345	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1341.04926788276	6	91	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	NA	False	NA	NA	False	NA	NA	NA	11399730	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384268_11385205_11385285_11387137_11387211_11387348_11387454_11387566_11387659_11387782_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390490_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
78363	chr9	-	4356	9	NIC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_8	115.161232083545	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACATTCTGATTGCAATC	2152	False	NA	NA	False	NA	NA	NA	58157068	58125362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156943
78364	chr8	-	2530	19	Intergenic	novelGene_1743	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	35	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCATCCAATCAGAGCGCT	NA	False	NA	NA	False	NA	NA	NA	111782198	111760511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760540_111763539_111763704_111766761_111766951_111767226_111767374_111768108_111768117_111769345_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780641_111780756_111780846_111781946
78366	chr2	+	2128	12	NNC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	-6	358	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	3373.81559260321	572	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAAAGTCACTCATTGA	7526	False	NA	NA	False	NA	NA	NA	75489655	75496823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741_75496626_75496740
78367	chr6	+	2683	4	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACACCCGCGTCCTTGA	8809	False	NA	NA	False	NA	NA	NA	122704782	122709788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708555_122709328_122709432_122709728
78368	chr18	-	3694	13	ISM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	4041	13	1257	-13	3prime_fragment	FALSE	canonical	3	5978	junction_5	273.32747707141	39	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCATAAACAAATCCAGTC	4240	False	NA	NA	False	NA	NA	NA	35083369	35070479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069
78369	chr18	-	3237	3	Genic_Genomic	ENSMUSG00000024359.11	novel	3049	17	NA	NA	13	-1760	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	45	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGCCCATCACTCAGGAG	212	False	NA	NA	False	NA	NA	NA	35087397	35082984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_35083242_35083641_35083762_35084537
78370	chr12	+	704	8	FSM	ENSMUSG00000021243.15	ENSMUST00000021669.15	749	8	43	2	-41	-2	multi-exon	FALSE	canonical	3	1900	junction_1	151.77601649692	7391	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATGTTGTCTCAATTCT	4672	False	NA	NA	False	NA	NA	NA	85017713	85030075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
78371	chr14	-	6669	7	NNC	ENSMUSG00000068245.15	novel	1281	8	NA	NA	-5011	184	intron_retention	FALSE	canonical	3	329	junction_3	34.8684033984287	27	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACAGGCTTTGGACGTTC	NA	False	NA	NA	False	NA	NA	NA	59607930	59584671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
78372	chr6	-	3222	14	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	901	-304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	263.150619457204	225	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTATAGTAGTAAATAGAT	945	False	NA	-49	True	NA	NA	NA	30508802	30481530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505592_30505974_30506784_30506917_30508452_30508512_30508664
78373	chr6	-	6707	9	FSM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	-285	13	-285	-13	multi-exon	FALSE	canonical	3	240	junction_7	14.8070928949608	1063	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTTGCCAAACAGGTGT	7035	False	NA	NA	False	NA	NA	NA	85938934	85919262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
78374	chr4	-	5329	4	NIC	ENSMUSG00000028568.17	novel	3141	6	NA	NA	-4	-5	intron_retention	FALSE	canonical	3	1029	junction_3	68.5921926234239	20	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAAATGTGTGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	108690815	108671496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_108676535_108683296_108683411_108687714_108687781_108690704
78375	chr12	+	6305	25	NIC	ENSMUSG00000042700.17	novel	6179	24	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	32.3541331294095	164	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAATGTCTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	82216148	82497048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_82216278_82216789_82216851_82281236_82281303_82312730_82312800_82358122_82358184_82387435_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590_82493706_82496083_82496166_82496674
78376	chr2	-	2703	13	Antisense	novelGene_ENSMUSG00000026917.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	550	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGGACACCGTGAAGGG	2	True	NA	NA	False	NA	NA	NA	27426547	27408707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_27408803_27409358_27409470_27409754_27409828_27410337_27410429_27410584_27410673_27410833_27410924_27415117_27415171_27418282_27418332_27421649_27421727_27423004_27423037_27423346_27423422_27423777_27423865_27424765
78377	chr10	-	2932	11	Antisense	novelGene_ENSMUSG00000089313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGCCCAGCCCAGGGTCC	NA	False	NA	NA	False	NA	NA	NA	128198346	128173635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128173825_128185618_128185672_128186300_128186409_128187066_128187132_128188540_128188673_128188889_128189079_128194200_128194401_128194994_128195167_128195300_128195403_128195810_128196021_128196834
78378	chrX	+	6594	7	FSM	ENSMUSG00000025860.16	ENSMUST00000115095.9	6670	7	79	-3	67	3	multi-exon	FALSE	canonical	3	22	junction_1	35.08283847632	343	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTATCTTCTTTGTATTTG	NA	False	NA	NA	False	NA	NA	NA	41157353	41198536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_41157750_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
78379	chr13	-	4001	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	-22	-285	-22	285	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	1185	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATATTCTGCATAGGAGG	NA	False	NA	NA	False	NA	NA	NA	111626667	111561928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
78380	chr16	+	3405	14	NIC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-19	-630	intron_retention	FALSE	canonical	3	2673	junction_8	222.434725482762	4	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGACAGTTTTACCCAGTGA	NA	False	NA	NA	False	NA	NA	NA	20470434	20480229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478853_20479092
78381	chr10	+	2770	11	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	458.308640546957	2	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGCTTGCTCTTACG	NA	False	NA	NA	False	NA	NA	NA	128173602	128198346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194300_128195089_128195169_128195302_128195405_128195812_128196023_128196836
78382	chr2	-	3747	23	Antisense	novelGene_ENSMUSG00000027006.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCGGACGCTGCCTGCGA	NA	False	NA	NA	False	NA	NA	NA	80184382	80146094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_80146148_80147590_80147942_80149501_80149666_80151586_80151638_80155002_80155087_80155338_80155470_80155960_80156054_80156999_80157078_80158413_80158459_80161611_80161750_80163271_80163357_80164063_80164184_80165796_80165911_80170815_80170943_80171154_80171271_80174258_80174361_80175265_80175423_80176854_80176978_80177680_80177739_80177986_80178139_80179611_80179730_80180970_80181076_80183200
78383	chr18	+	6181	22	ISM	ENSMUSG00000038773.12	ENSMUST00000043775.9	6363	24	17473	-335	-2375	335	3prime_fragment	FALSE	canonical	3	208	junction_5	46.477117477094	327	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTTTGGAGTAGACAAAA	NA	False	NA	NA	False	NA	NA	NA	34927572	34972048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_34927617_34928727_34928834_34929840_34929966_34932337_34932413_34936502_34937103_34941293_34942543_34943311_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
78384	chr1	+	2942	7	Antisense	novelGene_ENSMUSG00000042414.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGCCCATCTTGCACAGG	NA	False	NA	NA	False	NA	NA	NA	13187509	13197613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13188439_13188633_13189192_13192586_13192856_13194586_13194749_13194844_13194901_13195392_13196083_13197335
78386	chr18	+	2029	10	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	353.290877952495	590	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATACACTGCAATTCTGAG	NA	False	NA	NA	False	NA	NA	NA	68433430	68454973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452295_68454382
78387	chr18	-	2127	15	ISM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	5460	2372	-1	156	3prime_fragment	FALSE	canonical	3	792	junction_3	62.3785759271072	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAACAACTTTTGACATTT	5400	False	NA	NA	False	NA	NA	NA	10024681	9995437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533
78388	chrX	+	4849	26	FSM	ENSMUSG00000000037.18	ENSMUST00000019101.11	4842	26	0	-7	0	7	multi-exon	FALSE	canonical	3	8	junction_13	115.162146558667	5	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTAACAGCTAAGCCTT	1357	False	NA	NA	False	NA	NA	NA	159945767	160041199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_159946245_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
78389	chr15	+	3532	11	Antisense	novelGene_ENSMUSG00000092014.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	128	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCCCAGCGCACCTGTC	5877	False	NA	NA	False	NA	NA	NA	99676996	99773266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99679174_99681401_99681537_99692289_99692403_99694624_99694680_99699988_99700094_99704303_99704455_99705541_99705623_99717374_99717841_99724674_99724715_99741548_99741705_99773213
78390	chr2	-	4462	29	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.185576872239523	13	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGCGGCCGGAAGTTAC	NA	False	NA	NA	False	NA	NA	NA	146918512	146854938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146855115_146866425_146866556_146866634_146866746_146867113_146867225_146868298_146868360_146868434_146868525_146869226_146869298_146869512_146869565_146870011_146870169_146871255_146871331_146871412_146871547_146871644_146871703_146871786_146871895_146876771_146876817_146878578_146878714_146880086_146880206_146882733_146882870_146883905_146884015_146884092_146884182_146884777_146884851_146889552_146889639_146891211_146891308_146891900_146891983_146893632_146893686_146903164_146903236_146903323_146903456_146905150_146905281_146910711_146910774_146916802
78391	chr6	-	2162	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.24264068711928	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCAAATCAGCCTATCT	7478	False	NA	NA	False	NA	NA	NA	122691586	122684572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688759_122689580_122689666_122690091
78392	chrX	-	7607	39	FSM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	9	6	-6	-6	multi-exon	FALSE	canonical	2	149	junction_20	23.0069843664894	201	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATCATTGTGTATATTG	NA	False	NA	NA	False	NA	NA	NA	41000769	40883873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_40886657_40891823_40891870_40892332_40892410_40895278_40895440_40895521_40895592_40895910_40896049_40901335_40901372_40902826_40902886_40903074_40903506_40911244_40911348_40911569_40911749_40912238_40912424_40912510_40912643_40912966_40913096_40914312_40914471_40914896_40915039_40916059_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
78393	chr5	-	4748	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	-35	-782	-35	782	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	1452	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGTGCCACCTTAGTGT	NA	False	NA	NA	False	NA	NA	NA	4154781	4130362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
78394	chr1	-	1839	15	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGAACAGACCACGTTGCT	NA	False	NA	NA	False	NA	NA	NA	59750569	59724206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729722_59731495_59731547_59735134_59735257_59737479_59737616_59740040_59740109_59741969_59742106_59743220_59743366_59743777_59743908_59744749_59744914_59745789_59745926_59746160_59746222_59748159_59748293_59749650_59749812_59750429
78395	chr8	-	3287	19	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-13	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.311849531882	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACAGGTTTCTTTATAG	NA	False	NA	NA	False	NA	NA	NA	80438312	80410071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_80410681_80411148_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
78397	chr5	-	4526	14	NNC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	-25	-2515	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.85655674939	24	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACAAGCCCCAAACCCAAA	5506	False	NA	NA	False	NA	NA	NA	148336626	148266734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148268999_148269048_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
78398	chrX	-	3322	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	-85	14	-85	0	multi-exon	FALSE	canonical	3	241	junction_8	283.721694623446	5	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	NA	False	NA	NA	NA	23231406	23085523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
78399	chr16	-	2119	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	79	1205	0	694	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTGGCCAAGTAGAACTG	NA	False	NA	NA	False	NA	NA	NA	22084676	22064503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
78400	chr16	-	3212	21	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	428.584600749957	1	100	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	1519	False	NA	NA	False	NA	NA	NA	91440022	91418282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421358_91422222_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844
78401	chr19	-	5802	24	FSM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	-16	-2338	-16	66	multi-exon	FALSE	canonical	2	185	junction_5	71.1727842464471	385	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAAATCAATGTC	NA	False	NA	NA	False	NA	NA	NA	23251277	23183748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
78402	chr19	-	2015	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	1113.93019726328	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCCATTCATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	15902280	15882498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886666_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
78403	chr14	+	3767	19	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-44	40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	298.461962752168	65	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAATGAAATGGATTTT	1787	False	NA	NA	False	NA	NA	NA	121148591	121185451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159572_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
78405	chr12	+	4644	18	NIC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-38	0	intron_retention	FALSE	canonical	3	212	junction_1	112.345549495071	516	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTGTAGTGCATATA	3943	False	NA	NA	False	NA	NA	NA	83678987	83729897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83722093_83722855_83722955_83724628_83724677_83728276
78406	chr7	+	6369	4	NIC	ENSMUSG00000049739.11	novel	6310	3	NA	NA	114	-38	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	56.7802782663136	6	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACCCCCAAGGAAAAAAAA	872	False	NA	NA	False	NA	NA	NA	127476081	127485126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127476385_127477074_127477280_127477741_127483091_127484614
78407	chr4	+	2691	4	NIC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	41	-232	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	226.592634969061	1	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAAAGAGTATCTGGC	5060	False	NA	NA	False	NA	NA	NA	145241494	145265526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_145241589_145257381_145257486_145261385_145261513_145263160
78408	chr4	-	2795	4	Antisense	novelGene_ENSMUSG00000078503.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1016	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAATGGTGGAACTTCC	7246	False	NA	NA	False	NA	NA	NA	145265576	145237347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237493_145257378_145257484_145261383_145261512_145263159
78409	chr9	+	5234	8	Intergenic	novelGene_1063	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	614	44	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGAGACAGGGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	58124469	58157068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129154_58136640_58136691_58137110_58137369_58140434_58140531_58141635_58142217_58154257_58154725_58156825
78410	chr9	+	7160	13	FSM	ENSMUSG00000032384.17	ENSMUST00000206594.2	2482	13	-108	-4570	3	1	multi-exon	FALSE	canonical	2	3	junction_1	7.24377127070024	151	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTACTTCCTTGTTTCATT	NA	False	NA	NA	False	NA	NA	NA	65816261	65952292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65816451_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
78411	chr4	+	7148	51	NNC	ENSMUSG00000028991.16	novel	8564	58	NA	NA	-4	1612	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_25	28.91792523678	35	64	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAGATCCTGCACATTG	NA	False	NA	NA	False	NA	NA	NA	148533063	148633857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008_148539210_148540441_148540577_148543083_148543360_148543440_148543550_148547243_148547431_148548148_148548278_148548759_148549005_148549403_148549620_148550347_148550554_148552706_148552830_148553444_148553535_148553823_148553917_148554678_148554814_148555028_148555159_148556370_148556622_148565321_148565409_148568011_148568180_148568766_148568880_148569082_148569246_148570505_148570599_148571232_148571384_148573932_148574076_148575791_148575955_148576077_148576224_148596227_148596304_148599282_148599423_148605748_148605850_148608915_148609032_148610180_148610259_148610454_148610563_148614938_148615065_148615134_148615267_148618318_148618435_148619364_148619483_148620967_148621217_148621818_148621920_148622319_148622417_148622732_148622832_148622919_148623043_148623184_148623368_148624437_148624573_148624741_148624917_148628875_148629012_148629966_148630115_148630854_148630978_148632060_148632144_148633824
78412	chr10	-	3321	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	47	1354	47	-1354	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACATGTCTAGGTGTTTTT	NA	False	NA	-108	True	NA	NA	NA	62438013	62417383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
78413	chr11	-	4904	5	NIC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	41	-17	intron_retention	FALSE	canonical	3	618	junction_3	58.0301645698166	14	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGATTGAAATGCAACCT	NA	False	NA	NA	False	NA	NA	NA	40646097	40639395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40644896_40645827
78414	chr6	+	2067	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	350	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684596	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690504_122690577
78415	chr5	-	3608	11	NNC	ENSMUSG00000029246.15	novel	3981	11	NA	NA	-39	-79	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	187.950951048405	299	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATAAACCTACTTTCTT	NA	False	NA	NA	False	NA	NA	NA	77099051	77061201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_77063333_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
78416	chr10	-	3005	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	-73	-107	-73	107	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	5567	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTTTGTGGTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	86541446	86526596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
78417	chr8	-	2858	6	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-93	981	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1809.82922951311	912	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTACCCTAAATCATGCT	NA	False	NA	NA	False	NA	NA	NA	43760110	43747118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43747954_43748050_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
78418	chr5	+	1261	2	NNC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	960	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTAAGTATCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	34509419	34510772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34510215_34510306
78419	chr9	+	4368	13	NIC	ENSMUSG00000001833.18	novel	2516	14	NA	NA	0	1852	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	380.283474310064	2392	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTGCTCTAAATAGC	NA	False	NA	NA	False	NA	NA	NA	25163746	25221719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_25163996_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
78420	chr2	+	4519	11	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	39	0	intron_retention	FALSE	non_canonical	0	0	junction_10	364.337974962808	1	131	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	789	False	NA	NA	False	NA	NA	NA	29804444	29821758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29816115_29816715_29816842_29820481_29821206_29821538
78421	chr9	-	4104	27	NIC	ENSMUSG00000032407.15	novel	3111	28	NA	NA	-8	579	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	203.484137904403	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGTTTTCAGGCAATTTTAA	8183	False	NA	NA	False	NA	NA	NA	95394057	95342451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
78422	chr4	-	4355	26	FSM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	240	4	240	-4	multi-exon	FALSE	canonical	3	287	junction_9	34.7585960591046	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTACCTGACTTGTCTTTCC	89	False	NA	NA	False	NA	NA	NA	41124215	41114430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
78423	chr10	-	3308	7	FSM	ENSMUSG00000075232.7	ENSMUST00000213620.2	1442	7	0	-1866	0	0	multi-exon	FALSE	canonical	3	315	junction_2	51.8183258016784	2622	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTTTTCTGTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	40178182	40163453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_40165466_40166113_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
78424	chr16	+	6378	18	NNC	ENSMUSG00000097876.2	novel	1726	4	NA	NA	1627	57162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	47	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAGACCACAAATCCCA	NA	False	NA	NA	False	NA	NA	NA	56989390	57051938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_56990801_56991982_56992185_56993390_56993523_56998294_56998383_57003212_57003353_57004741_57004850_57007000_57007046_57009626_57009796_57011836_57011929_57012970_57013094_57018642_57018747_57019085_57019136_57019222_57021344_57027784_57028690_57032732_57032939_57034526_57034632_57038667_57038783_57051675
78426	chr9	-	1538	10	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2235.12609636832	343	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996740	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89979920_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
78427	chr6	-	3040	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	3	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTCATGTCACAAGCT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706340_122707015_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
78428	chr9	+	5750	8	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	-34	-39	intron_retention	FALSE	canonical	3	258	junction_6	136.994115768167	481	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAATCAAATCCCTCAAAT	9038	False	NA	NA	False	NA	NA	NA	15217475	15228204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15225329_15225526_15226428_15226678
78429	chr5	-	4001	1	FSM	ENSMUSG00000088712.3	ENSMUST00000158087.3	129	1	32	-3904	32	3904	mono-exon	FALSE	NA	NA	NA	NA	NA	3	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTATGTCCCTAATTT	NA	False	NA	NA	False	NA	NA	NA	92204019	92200018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92200000_92204000
78430	chr5	-	2345	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	13	260	-1	multi-exon	FALSE	canonical	3	916	junction_1	0	1	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAATCTTCATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
78431	chr7	+	3559	5	Antisense	novelGene_ENSMUSG00000092574.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCAAAGCCGAAAGTCCCG	NA	False	NA	NA	False	NA	NA	NA	8086914	8096010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_8089969_8091138_8091227_8091986_8092113_8093258_8093301_8095761
78432	chr3	-	3222	5	Antisense	novelGene_ENSMUSG00000105460.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	202	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTCTAGAAAAACGTAATC	2988	False	NA	NA	False	NA	NA	NA	95526557	95495862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_95496444_95499025_95499215_95515214_95515346_95516979_95517095_95524351
78433	chr1	+	5790	10	FSM	ENSMUSG00000026782.16	ENSMUST00000187709.7	1671	10	-123	-3996	-15	-4	multi-exon	FALSE	canonical	3	29	junction_7	51.9553464495364	182	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTGCAGTGTCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	60448838	60520313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60449079_60473401_60473570_60476214_60476392_60483143_60483242_60486418_60486566_60487236_60487362_60492762_60492922_60503687_60503775_60509824_60509999_60515898
78434	chr18	+	4237	11	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	-116	259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	639.612038660937	1410	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAATGAGCCATGAAGAT	312	False	NA	NA	False	NA	NA	NA	61688228	61723391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496_61722027_61722283
78436	chr9	-	1839	2	NIC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	29	intron_retention	FALSE	canonical	3	9075	junction_1	0	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAATGGCATTTTTCTAT	7153	False	NA	NA	False	NA	NA	NA	78388953	78386164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_78387971_78388920
78437	chr2	-	3754	17	NIC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	24	256	intron_retention	FALSE	canonical	3	1726	junction_3	108.266742354243	556	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAGACCCAACAGAGGGA	NA	False	NA	NA	False	NA	NA	NA	103627425	103597195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
78439	chr10	-	4172	24	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	117.448585058847	4	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTAATCTGTGTAGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628013	62579713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587603_62588961_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
78440	chr4	-	3725	10	Antisense	novelGene_ENSMUSG00000095460.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	230.734094191175	5	66	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAATGGCGGAAATTCC	141	False	NA	NA	False	NA	NA	NA	146806002	146586453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146586607_146597239_146597332_146599347_146599498_146797293_146797382_146800388_146800517_146802049_146802597_146802680_146803269_146803352_146803643_146803810_146804226_146804728
78441	chr11	-	1876	9	ISM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	4959	168	4547	-161	3prime_fragment	FALSE	canonical	3	1798	junction_7	97.2596396250778	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCATGGCCTGTGGCCTG	8326	False	NA	NA	False	NA	NA	NA	120459120	120451291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999
78442	chr3	+	3041	13	ISM	ENSMUSG00000068823.11	ENSMUST00000199420.5	4185	20	22964	7	35	-7	3prime_fragment	FALSE	canonical	0	0	junction_5	4643.5924401265	5	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTAGCACCTAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	102950892	102965495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
78443	chr5	-	4636	4	Intergenic	novelGene_763	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	226	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAACCTGCAATGTGATT	NA	False	NA	NA	False	NA	NA	NA	104734351	104719523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_104719636_104728351_104728478_104728719_104728782_104730015
78444	chr15	-	3393	4	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	-2	-541	intron_retention	FALSE	canonical	3	16287	junction_3	7519.33704229007	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGGTGAGACTGATCCTG	3569	False	NA	NA	False	NA	NA	NA	79967556	79962536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962628_79962907_79965985_79966590_79966784_79967524
78445	chr9	+	4798	11	NNC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	-22	1	intron_retention	FALSE	canonical	3	33	junction_2	563.994290751245	16	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	NA	False	NA	NA	False	NA	NA	NA	54493742	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54499547_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
78446	chr7	+	512	5	NNC	ENSMUSG00000040952.17	novel	774	6	NA	NA	-121	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5927.76928426706	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCTGGTCTGGATCTGG	NA	False	NA	NA	False	NA	NA	NA	24583936	24589228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24584093_24584560_24584615_24587706_24587891_24588331_24588387_24589165
78447	chr3	-	3714	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	-521	0	-521	0	multi-exon	FALSE	canonical	3	308	junction_2	396.900211360208	1668	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTTCCTGAGTGTGA	8652	False	NA	NA	False	NA	NA	NA	104772342	104730094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
78448	chr11	+	6829	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	-126	0	-126	0	multi-exon	TRUE	canonical	3	6361	junction_7	586.595613027527	1089	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGAATTCTCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	55360384	55395664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
78449	chr6	-	1046	1	ISM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	48611	5321	32642	2	mono-exon	FALSE	NA	NA	NA	NA	NA	25	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTCTGGATTTGAATCTT	NA	False	NA	NA	False	NA	NA	NA	144945927	144944881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_144944900_144945900
78450	chrX	-	3946	27	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	577	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_22	124.869091214874	57	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	59223872	59101315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
78451	chr6	-	4005	5	Antisense	novelGene_ENSMUSG00000007458.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	161	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAACAGGAAGCAGCGAGA	NA	False	NA	40	True	NA	NA	NA	122294637	122285954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122286126_122289192_122289371_122290215_122292394_122293008_122293136_122293286
78452	chr19	-	2549	19	NNC	ENSMUSG00000024853.11	novel	3222	21	NA	NA	57	-371	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	536.342324925204	1	132	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACAGGCGCTCTTGAA	5000	False	NA	NA	False	NA	NA	NA	5344349	5324330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333970_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326
78453	chr10	+	1372	8	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-30	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1927.33048964793	2	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATGGTCTTTATTTTTC	NA	False	NA	NA	False	NA	NA	NA	126899441	126903152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899624_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
78454	chr16	+	4929	10	NNC	ENSMUSG00000063358.18	novel	5099	9	NA	NA	27	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.514472385735	525	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATCCTTAGAATCATT	NA	False	NA	NA	False	NA	NA	NA	16801272	16865296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_16801427_16801548_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177_16856304_16861549
78455	chr15	-	4000	13	NNC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	0	53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	204.370782321414	14	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGTGTATATTGCCCA	NA	False	NA	NA	False	NA	NA	NA	38519510	38488428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490624_38491899_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
78456	chr3	-	2492	19	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	155	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATACCCACGCTACAGCA	NA	False	NA	NA	False	NA	NA	NA	151938644	151916234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916331_151919610_151919707_151921232_151921282_151923463_151923520_151923609_151923682_151923840_151923907_151925318_151925486_151925568_151925669_151925774_151925859_151926096_151926204_151926319_151926422_151926901_151927050_151927730_151927881_151928464_151928618_151928916_151928994_151931709_151931850_151933809_151933882_151937512_151937655_151938029
78457	chr6	+	3585	9	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	154	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACTATCACCGAAAGCAT	8830	False	NA	NA	False	NA	NA	NA	122704803	122719457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708598_122709693_122709833_122712383_122712554_122713555_122713718_122714049_122714257_122716788_122716953_122717363_122717435_122719327
78458	chr6	+	2397	2	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	135	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGGCTGAAGAGCTCAG	8819	False	NA	NA	False	NA	NA	NA	122704792	122708435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707105_122708350
78459	chr1	+	5332	10	NNC	ENSMUSG00000026349.15	novel	6738	9	NA	NA	47	373	intron_retention	FALSE	canonical	3	45	junction_6	206.314634466539	57	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTATAAAAGAGTGACTCA	NA	False	NA	NA	False	NA	NA	NA	127701947	127734042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725369_127725457_127725577_127725934_127727126_127727291_127729342_127729414_127729898
78460	chr1	-	2560	16	Antisense	novelGene_ENSMUSG00000026553.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCAGCCAGGACCCAGAAG	NA	False	NA	NA	False	NA	NA	NA	171949892	171929832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171929858_171931673_171931991_171932724_171932820_171933683_171933759_171935877_171935944_171937337_171937492_171938054_171938140_171938241_171938379_171939427_171939599_171939694_171939836_171940590_171940782_171940899_171940997_171942311_171942401_171942589_171942682_171948793_171948991_171949264
78461	chr2	+	4594	24	NNC	ENSMUSG00000027384.7	novel	1166	11	NA	NA	-50766	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.751188925942	1449	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATGTTTCCCAGAATTT	NA	False	NA	NA	False	NA	NA	NA	139961802	140045555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_139962822_139965446_139965597_139966846_139966922_139971116_139971207_139980851_139980973_139990670_139990833_139996711_139996860_139998972_139999090_140000399_140000552_140001610_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
78462	chr12	-	2672	10	ISM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	648	3	31	-3	3prime_fragment	FALSE	canonical	3	11114	junction_7	1571.89128829643	73	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTGGAATGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	110662075	110657464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952
78463	chr11	+	536	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-141	-34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGGACAGTCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120654327	120655211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120654802_120655149
78464	chr19	-	5919	47	NNC	ENSMUSG00000048612.17	novel	6633	54	NA	NA	18951	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	37.3651134258047	6	69	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTACACATGGATGTTTG	9954	False	NA	NA	False	NA	NA	NA	38012848	37887685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909223_37923210_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931999_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789
78465	chr11	-	3790	5	NIC	ENSMUSG00000020326.8	novel	3512	6	NA	NA	43	120	combination_of_known_junctions	FALSE	canonical	3	618	junction_2	50.9043220168975	1211	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTAGTGCAGTTATCAA	NA	False	NA	NA	False	NA	NA	NA	40646095	40639258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
78466	chr9	-	4583	13	NNC	ENSMUSG00000032423.13	novel	9450	12	NA	NA	20	956	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	259.211464509835	9	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGTCAAGAAAAACAGGC	NA	False	NA	NA	False	NA	NA	NA	88364281	88333533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88334665_88334728_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
78467	chrX	-	4380	6	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	96	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCACGGCCTCCACCGTC	NA	False	NA	NA	False	NA	NA	NA	100489367	100473331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100473367_100474096_100474157_100480812_100480982_100483090_100483286_100485120_100487966_100488291
78468	chr4	+	2676	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	128.891582347336	1	40	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147597546_147599053
78469	chr12	+	3567	5	Genic_Genomic	ENSMUSG00000113724.2_ENSMUSG00000116815.2	novel	1785	1	NA	NA	-49	1659	multi-exon	FALSE	canonical	0	0	junction_2	11.9869720947369	94	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTGTTTTTATTGAATG	NA	False	NA	NA	False	NA	NA	NA	18660335	18701658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_18660512_18696480_18696608_18696807_18696869_18698202_18698442_18698694
78470	chr12	-	7287	11	NNC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	4496	68918	intron_retention	FALSE	non_canonical	0	0	junction_1	0	96	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGCACGTGACCGCCCCG	NA	False	NA	NA	False	NA	NA	NA	85864528	85793303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_85794362_85829728_85829872_85832860_85833002_85842947_85843016_85845270_85845374_85849906_85850019_85851140_85851245_85851366_85851479_85851966_85852026_85858815_85861058_85861383
78472	chr14	-	2967	9	FSM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	-58	-336	55	336	multi-exon	FALSE	canonical	3	58	junction_8	1775.59757106587	45	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTCTTTAGTCTCCAT	NA	False	NA	NA	False	NA	NA	NA	36857154	36842444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856921
78473	chr6	+	1786	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	7	-987	intron_retention	FALSE	non_canonical	0	0	junction_2	2048.1074190579	198	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATTATATGTAAGTACAC	NA	False	NA	NA	False	NA	NA	NA	122684533	122690605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688639_122688894_122689675_122690100
78474	chr2	+	1666	12	NNC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_11	636.657477613868	2	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAGCCAATAGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	69691952	69701848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701024_69701175_69701465
78475	chr2	+	1587	12	NNC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	827.073132765264	4	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAATAGTTCTTTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	69692016	69701854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69692057_69693584_69693660_69696541_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700366_69700728_69700925_69701021_69701175_69701465
78476	chr18	+	4458	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	-128	-247	-128	247	multi-exon	TRUE	canonical	0	0	junction_9	613.012254927549	1498	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTAACTCAACTAGAATG	300	False	NA	NA	False	NA	NA	NA	61688216	61723379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
78477	chr11	-	4680	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	-69	582	-69	-582	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	736	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTTGAAAAAAAATTGCT	NA	False	NA	NA	False	NA	NA	NA	106107239	106088815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
78478	chr11	-	4120	14	NNC	ENSMUSG00000025155.16	novel	1930	14	NA	NA	0	2005	intron_retention	FALSE	canonical	0	0	junction_5	259.578401924278	20	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCACACACTCAGGCTC	NA	False	NA	NA	False	NA	NA	NA	120687221	120678021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
78479	chr4	-	3099	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	679.127424415882	1	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTGCGTTCTGGCCACT	9809	False	NA	NA	False	NA	NA	NA	43000439	42979964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980488_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
78480	chr11	-	3176	7	NNC	ENSMUSG00000059796.17	novel	1845	10	NA	NA	-55	-2	intron_retention	FALSE	canonical	2	5	junction_6	5106.49232731127	65	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTGGGCTTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	69562103	69557764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69561574_69561753_69561803_69562035
78481	chr13	+	4120	13	Antisense	novelGene_ENSMUSG00000041747.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	622	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCGCAGAGGCGCGTCG	NA	False	NA	NA	False	NA	NA	NA	98383323	98399515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_98385885_98387079_98387138_98387291_98387427_98388436_98388538_98389251_98389409_98390153_98390236_98391425_98391565_98393610_98393734_98394342_98394523_98395612_98395800_98395882_98395975_98397306_98397478_98399381
78482	chr14	-	6096	14	NNC	ENSMUSG00000021969.9	novel	2179	14	NA	NA	6	-72	intron_retention	TRUE	non_canonical	0	0	junction_3	86.228333184557	10	96	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTGTTTTTTAATGGT	NA	False	NA	NA	False	NA	NA	NA	58127727	58070231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58074104_58075047_58075125_58076546_58077266_58077593_58078008_58078314_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
78483	chr15	-	2909	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	-91	-1	-91	1	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	4160	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTATGCTTTTATTTA	286	False	NA	NA	False	NA	NA	NA	36609308	36595903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
78484	chr2	-	4769	26	FSM	ENSMUSG00000034032.16	ENSMUST00000099529.9	4813	26	21	23	-3	-16	multi-exon	FALSE	canonical	3	111	junction_25	84.4691091464803	235	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTTTCTAGTCTGAC	494	False	NA	NA	False	NA	NA	NA	119617988	119594462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617895
78485	chr18	+	3313	12	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	237.785409195868	14	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	NA	False	NA	NA	NA	13105324	13126007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549_13124504_13124608
78486	chr2	-	4954	17	NNC	ENSMUSG00000034101.15	novel	5789	17	NA	NA	10	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	96.1937335536988	4	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGGGAGGTCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	84481074	84431127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_84432135_84432174_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84443259_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84480749
78487	chr18	+	4589	22	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	6	324	intron_retention	FALSE	canonical	0	0	junction_4	165.548041954628	4	110	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGGTAGTCTGTAACTTA	8998	False	NA	NA	False	NA	NA	NA	32970311	33000971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32978666_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
78488	chr18	+	3803	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	25	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	773	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATTGTCAAGAAATGT	13	True	NA	NA	False	NA	NA	NA	3383256	3436377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
78489	chr10	+	712	6	Intergenic	novelGene_3563	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCGCCGCGGATCACCG	NA	False	NA	NA	False	NA	NA	NA	127122335	127124713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_127122445_127122665_127122828_127122938_127123040_127123264_127123407_127123494_127123554_127124574
78490	chr10	+	3098	23	NNC	ENSMUSG00000025408.16	novel	890	4	NA	NA	-199	15349	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1834	13	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCCCACGCTGATGCAAT	NA	False	NA	NA	False	NA	NA	NA	127126443	127147506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127126529_127126643_127126747_127131972_127132309_127132408_127132502_127132740_127132812_127133332_127133521_127133602_127133708_127133789_127133923_127135116_127135326_127135811_127135933_127136041_127136140_127136275_127136455_127138685_127138758_127140055_127140256_127141290_127141493_127141607_127141730_127144130_127144233_127144368_127144551_127144779_127144852_127145871_127146008_127146088_127146168_127146312_127146403_127147386
78492	chr8	-	3660	27	NNC	ENSMUSG00000039509.9	novel	5808	26	NA	NA	-6	-2193	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_26	114.807357298828	8	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTGAGGCCAAAAAACTTA	NA	False	NA	NA	False	NA	NA	NA	124676010	124626054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675493_124675533_124675736
78493	chr18	+	848	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	28	0	-3	0	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	2458	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTAGCTTTCACTTAG	NA	False	NA	NA	False	NA	NA	NA	34464225	34469652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
78495	chr1	+	5190	13	NIC	ENSMUSG00000026554.16	novel	2754	14	NA	NA	-48	-6	intron_retention	FALSE	canonical	3	418	junction_1	52.3479279012604	18	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTGCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	171975602	172023950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172016637_172020084_172020205_172021351_172021469_172022122
78496	chr9	+	993	3	ISM	ENSMUSG00000032294.18	ENSMUST00000163694.4	2041	11	18455	-181	3442	-5	3prime_fragment	FALSE	canonical	3	1413	junction_1	8219	4	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTGTGTTTTGTTTT	4002	False	NA	NA	False	NA	NA	NA	59582310	59586653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59582479_59585326_59585509_59586010
78497	chr18	+	4001	11	NNC	ENSMUSG00000024576.15	novel	1222	11	NA	NA	-1	235	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	774.205889928513	41	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATAGTTTATTGTAAC	488	False	NA	NA	False	NA	NA	NA	61688404	61723367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496_61722027_61722283
78498	chr17	-	2251	5	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	15	305	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	906.701852871163	6	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTAACCACATACAGCCT	4841	False	NA	NA	False	NA	NA	NA	25179595	25161138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25161395_25161821_25163653_25164553_25164603_25167611_25167673_25179541
78499	chr15	-	4075	7	NIC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	1009	junction_2	63.2308381162933	307	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTGTGGTGTTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	81845061	81835311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81835814_81836124_81836241_81836925_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
78500	chr2	-	2078	11	NNC	ENSMUSG00000061136.17	novel	7374	26	NA	NA	-5447	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	201.763723201174	1	57	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTAGTCTTTATTTCTA	NA	False	NA	NA	False	NA	NA	NA	53040768	53028250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035376_53035633_53035749_53035835_53035928_53036105_53036221_53040649
78501	chr1	-	6305	25	NNC	ENSMUSG00000041879.14	novel	4189	25	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	195.83836872959	1	117	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTCTCCTGTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	135358189	135310053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334313_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135354668_135354780_135358005
78503	chr3	+	5290	37	NNC	ENSMUSG00000028068.15	novel	5756	38	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	43.4511929967349	2	71	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAACCCCTGCGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	87989321	88028349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_87989400_87991237_87991326_87993456_87993614_87994584_87994663_87996200_87996278_87996967_87997036_87997123_87997238_87997444_87997624_87998042_87998122_87998777_87998942_87999718_87999807_88001890_88002055_88004208_88004367_88005624_88005747_88006163_88006328_88007932_88008024_88008734_88008903_88008984_88009125_88009203_88009375_88011366_88011451_88011607_88011680_88011772_88011843_88014818_88014897_88016245_88016278_88016578_88016804_88017301_88017443_88019610_88019696_88019904_88020138_88020406_88020540_88020653_88020757_88021230_88021358_88022210_88022299_88023210_88023424_88024086_88024254_88024505_88024608_88024982_88025092_88027469
78504	chr4	+	6493	24	FSM	ENSMUSG00000040720.16	ENSMUST00000059914.13	6506	24	1	12	1	-12	multi-exon	FALSE	canonical	3	55	junction_9	10.2468585254619	193	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTCTCTTAAACAAAAATAA	3	True	NA	NA	False	NA	NA	NA	11485958	11550672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_11486106_11494763_11494880_11498739_11498827_11501308_11501358_11505441_11505611_11506953_11507077_11507906_11508180_11513027_11514169_11518925_11519415_11521104_11521260_11522852_11522936_11526346_11526441_11526594_11527140_11527647_11527884_11528537_11528791_11530827_11531046_11534188_11534322_11539909_11540063_11540480_11540642_11542106_11542204_11544830_11544998_11545968_11546301_11548730_11548875_11549544
78505	chr18	+	5056	20	FSM	ENSMUSG00000053477.19	ENSMUST00000078486.13	7147	20	115	1976	-15	1463	multi-exon	FALSE	canonical	2	4	junction_1	28.0844590851464	204	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTTGATGTATTCATTA	3307	False	NA	NA	False	NA	NA	NA	69478906	69819062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_69479011_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811201_69814639_69814870_69815753_69815895_69816147
78506	chr18	+	1680	1	ISM	ENSMUSG00000053477.19	ENSMUST00000114985.10	8577	20	341749	1162	3858	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	42	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAACTGTCTCTGACA	NA	False	NA	NA	False	NA	NA	NA	69819308	69820988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_69819300_69821000
78507	chr2	-	4526	35	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.168957724898177	52	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCGGGCAGATCCGTGTAG	NA	False	NA	NA	False	NA	NA	NA	180998406	180961559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964104_180964302_180964591_180964687_180965154_180965236_180965474_180965536_180970393_180970472_180972585_180972669_180976702_180976770_180977684_180977835_180980022_180980144_180980844_180980888_180980955_180981033_180982286_180982393_180983321_180983371_180988621_180988698_180988803_180988887_180990965_180991101_180991255_180991367_180991459_180991503_180991687_180991772_180991916_180991995_180992425_180992504_180992817_180992963_180993037_180993158_180993365_180993491_180993593_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180996236_180996800_180996917_180997100_180997345_180997441_180997604_180997714
78508	chrX	+	3091	9	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	789	-5	intron_retention	FALSE	canonical	3	3075	junction_3	343.66917231547	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100474129	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100487098_100487882_100487968_100488293_100488941_100489724_100489835_100491199
78509	chr11	-	5110	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	-64	31	-64	-31	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	2825	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTTCCATTAAACCCTT	NA	False	NA	NA	False	NA	NA	NA	75239214	75189022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
78510	chr11	+	3864	8	ISM	ENSMUSG00000020458.17	ENSMUST00000102841.8	4060	9	11768	0	11768	0	3prime_fragment	FALSE	canonical	0	0	junction_1	341.972191255132	1100	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	29655541	29692916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_29655592_29656409_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
78512	chr17	-	1698	11	Antisense	novelGene_ENSMUSG00000007564.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGATTGGATGGAGGTCC	NA	False	NA	NA	False	NA	NA	NA	21186164	21176966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21177113_21177216_21177373_21178979_21179095_21179199_21179270_21179647_21179784_21180725_21180902_21181214_21181275_21181845_21182002_21182835_21182976_21185497_21185590_21185713
78513	chr18	+	3773	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237061.2	1854	14	-48	-1871	13	1033	multi-exon	FALSE	canonical	3	171	junction_1	296.625019792437	28	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTTGTAGTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	35695223	35725505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
78514	chrX	+	3178	13	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	16	-52	intron_retention	FALSE	canonical	3	147	junction_4	736.804983244097	4	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCAACAAAAGTGAGAGAAT	NA	False	NA	-50	True	NA	NA	NA	74139674	74153331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
78515	chr17	+	4785	9	Antisense	novelGene_ENSMUSG00000010592.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGGCTGCGCGCCCCGGG	NA	False	NA	NA	False	NA	NA	NA	50586430	50600631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_50588339_50590154_50590255_50591265_50593350_50594554_50594694_50594780_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
78516	chr4	+	2661	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	14	679	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.2788888531641	1	56	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCCTGTAACTAACTCCA	NA	False	NA	NA	False	NA	NA	NA	147056472	147075891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056568_147065612_147065693_147067150_147067255_147071090_147071218_147073383_147074794_147075046
78517	chr12	-	6031	11	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-3656	-8	intron_retention	FALSE	canonical	3	333	junction_3	30.4164429215515	289	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAAATATTTGTTTCTG	7986	False	NA	NA	False	NA	NA	NA	65205524	65179515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_65180400_65180577_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168
78518	chr7	+	3237	8	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-15	-248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	244.49882099795	2	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868028	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103874873_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
78519	chr10	+	5047	28	NNC	ENSMUSG00000039994.16	novel	4341	29	NA	NA	0	-3	intron_retention	FALSE	canonical	3	8	junction_27	82.8872505051066	10	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGACTTTTGTTGTCTT	6615	False	NA	NA	False	NA	NA	NA	128067957	128088805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128087753_128087861_128087958_128088063_128088148_128088461
78520	chr4	+	6268	8	Antisense	novelGene_ENSMUSG00000049878.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	150	10	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGACTCCGCCTGGCCC	NA	False	NA	NA	False	NA	NA	NA	121003079	121072303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_121008222_121012053_121012197_121016389_121016526_121027814_121028018_121039802_121039932_121045405_121045493_121047299_121047456_121072031
78521	chr7	+	2857	20	Antisense	novelGene_ENSMUSG00000084453.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	9	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTCGCGGCCGGAACCTGA	NA	False	NA	NA	False	NA	NA	NA	126146082	126165375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126146253_126146356_126146519_126146605_126146695_126146777_126146846_126146935_126147103_126151150_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156672_126156857_126156998_126157806_126157910_126158023_126158184_126161736_126161865_126162176_126162286_126162416_126162470_126162798_126162925_126163587_126163782_126163876_126163943_126165251
78522	chr7	-	5867	15	NNC	ENSMUSG00000066571.14	novel	6224	14	NA	NA	1341	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	49.6508729396923	13	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTATCTTTTTTAAATT	2385	False	NA	NA	False	NA	NA	NA	34011592	33936131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33936296_33936666_33938663_33939168_33939248_33939933_33940072_33941664_33941831_33944390_33945404_33947531_33947658_33953411_33953510_33955836_33955996_33956771_33956934_33957056_33957153_33957437_33957579_33962977_33963176_33984126_33985379_34011513
78523	chr14	+	6737	25	NIC	ENSMUSG00000021945.10	novel	6974	24	NA	NA	-56	-363	combination_of_known_junctions	FALSE	canonical	2	100	junction_12	26.7082683306541	237	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGATTTTTCTAGGCAA	NA	False	NA	NA	False	NA	NA	NA	57124053	57199795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_57124156_57125251_57125315_57140152_57141010_57148534_57148818_57150408_57150575_57151412_57151626_57156727_57156800_57158043_57158195_57158958_57159075_57163297_57163415_57165643_57165795_57169545_57169719_57174966_57175133_57175861_57175897_57179454_57179585_57180709_57180826_57181522_57181695_57183947_57184074_57185403_57185499_57186966_57187136_57187633_57187786_57193636_57193752_57194308_57194561_57195638_57195760_57197171
78524	chr15	-	3568	14	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	58	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	585.857819453991	2	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTATGATCTTCTTTCG	NA	False	NA	NA	False	NA	NA	NA	96953779	96892701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96906866_96908014_96908079_96908164_96908280_96911334_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
78525	chr13	-	5399	15	NNC	ENSMUSG00000033102.16	novel	5859	14	NA	NA	189	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	26.4100321074846	293	64	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGTTGTATTCAC	NA	False	NA	NA	False	NA	NA	NA	64396267	64340358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64341381_64341491_64344490_64353084_64353232_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
78526	chr10	-	4996	11	NIC	ENSMUSG00000020238.15	novel	3118	14	NA	NA	-21	27	intron_retention	FALSE	canonical	3	345	junction_10	35.1921866328309	14	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTATTGTGCTGCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	81332197	81322263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324301_81324382_81325955_81326060_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
78527	chr9	+	4842	35	NNC	ENSMUSG00000036768.7	novel	4858	35	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_28	44.7252666953352	313	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTATAAATACTATGCCT	NA	False	NA	NA	False	NA	NA	NA	122780155	122847798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910_122817089_122820150_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825462_122826846_122827013_122828239_122828391_122828579_122828666_122830109_122830180_122831099_122831187_122832634_122832740_122833635_122833759_122836378_122836526_122838381_122838484_122838795_122838990_122840592_122840703_122843004_122843078_122843533_122843572_122846309_122846476_122846651_122846784_122847132
78528	chr9	+	1549	13	NNC	ENSMUSG00000036768.7	novel	4858	35	NA	NA	-6	-648	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	60.9211694642256	1	29	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGCCCATGAAATCGAT	NA	False	NA	NA	False	NA	NA	NA	122780123	122817001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_122780135_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910
78529	chr5	+	3835	4	FSM	ENSMUSG00000090015.9	ENSMUST00000112544.8	2417	4	258	-1676	258	1676	multi-exon	FALSE	canonical	3	75	junction_1	50.6315667894601	210	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGCTCAGCAATTAATTT	NA	False	NA	NA	False	NA	NA	NA	110071523	110093478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940
78530	chr14	-	5660	8	Antisense	novelGene_ENSMUSG00000021806.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	113	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCCGCCCAGCGCGCTGA	NA	False	NA	NA	False	NA	NA	NA	19833381	19801312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_19801634_19802308_19802616_19813731_19813967_19818277_19819004_19828061_19828213_19828805_19829049_19829601_19831854_19831956
78531	chr7	+	5781	5	Antisense	novelGene_ENSMUSG00000030741.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	93	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACCGGAGCCCTACCGGA	NA	False	NA	NA	False	NA	NA	NA	125969243	125976595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_125969584_125969904_125970078_125970352_125972058_125972935_125975911_125976007
78532	chr16	-	4048	12	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	3	1656	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	346.957377047388	2	82	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTATATCCTCATGAAAG	6269	False	NA	NA	False	NA	NA	NA	38370581	38343842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38344603_38345132_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
78533	chr6	-	3203	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	-49	-1636	5	0	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	1	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	NA	False	NA	NA	NA	51446801	51438103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
78534	chr5	+	6284	4	NNC	ENSMUSG00000029177.10	novel	1120	4	NA	NA	-5	4	intron_retention	FALSE	non_canonical	0	0	junction_1	829.279607048592	261	119	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCGCTTGAATCTGTTG	9219	False	NA	NA	False	NA	NA	NA	30824273	30831726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30825491_30825654_30829915_30830325_30830788_30831381
78535	chr10	+	2033	7	ISM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	5114	-76	132	3	3prime_fragment	FALSE	canonical	3	638	junction_1	378.563806452169	5	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1019	False	NA	NA	False	NA	NA	NA	79695615	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
78536	chr16	+	3795	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-1	-513	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1773.97861017967	39	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTTGTCAAACTTTAGC	NA	False	NA	NA	False	NA	NA	NA	84571009	84622303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606371_84609842_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
78537	chr2	+	5883	21	NNC	ENSMUSG00000027624.21	novel	6249	22	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	55.6722552084968	265	33	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCATGGACTCCCTCAGC	7792	False	NA	NA	False	NA	NA	NA	156262979	156385131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156263220_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156353704_156353741_156355947_156356135_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
78538	chr18	-	5707	3	FSM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	17	2	17	-2	multi-exon	FALSE	canonical	3	135	junction_1	21.5	220	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAAGTGTGCTCTCATT	NA	False	NA	NA	False	NA	NA	NA	46659021	46634814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_46639457_46657168_46657897_46658684
78539	chr4	-	2679	6	NNC	ENSMUSG00000066000.13	novel	2558	5	NA	NA	52	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	228.857510254743	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATTTTGACTTGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	147726901	147696397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147706414_147706577_147725343_147725463_147726820
78540	chr18	+	4214	18	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	5	4027	combination_of_known_splicesites	FALSE	canonical	3	42	junction_4	422.186760687322	1995	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTCTTGTCGCTGCTTCA	NA	False	NA	NA	False	NA	NA	NA	35686479	35724788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
78541	chr5	+	3934	4	FSM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	4	-1857	3	1857	multi-exon	FALSE	canonical	3	131	junction_3	47.4856703531591	232	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATATAGTGTTACTGGG	8374	False	NA	NA	False	NA	NA	NA	110144390	110160134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110144500_110154809_110154937_110155121_110155183_110156497
78542	chr8	+	3622	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	27	2101	13	-2101	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	1	103	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATACTTGGTGATGTCAT	NA	False	NA	NA	False	NA	NA	NA	111760560	111782195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
78543	chr3	-	5498	5	Intergenic	novelGene_3061	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	113	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGGTTTCCGTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	4228000	4221024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_4221130_4221172_4222142_4223027_4226554_4226792_4226919_4227228
78544	chr10	-	2914	10	Fusion	ENSMUSG00000091994.3_ENSMUSG00000035835.15	novel	3063	9	NA	NA	2846	-3079	intron_retention	FALSE	non_canonical	0	0	junction_1	0	694	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATGGCGGAGACGCCC	NA	False	NA	NA	False	NA	NA	NA	79700269	79690464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_79690563_79694561_79694656_79694782_79695354_79695432_79695544_79695612_79695789_79696656_79696806_79698246_79698375_79698485_79698704_79698811_79698890_79698978
78545	chr14	+	3439	9	NIC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	16	1265	intron_retention	FALSE	canonical	3	6333	junction_1	614.086605760946	9	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGACATTGGCAGGGTG	NA	False	NA	NA	False	NA	NA	NA	63359926	63380577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
78546	chr12	+	1536	2	Fusion	ENSMUSG00000113157.3_ENSMUSG00000112951.3	novel	725	2	NA	NA	-202	-48167	multi-exon	TRUE	canonical	0	0	junction_1	0	5	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGGACTAGACTCAATGAA	NA	False	NA	NA	False	NA	NA	NA	20465735	20666637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_+_20466065_20665430
78547	chr18	-	4114	11	NIC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	0	-2	intron_retention	FALSE	canonical	3	3478	junction_10	596.753718044555	57	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGCTGACTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	64649586	64632719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634947_64636578_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
78548	chr7	-	3546	3	FSM	ENSMUSG00000030541.17	ENSMUST00000156761.2	485	3	-2864	-197	246	0	multi-exon	FALSE	canonical	3	1907	junction_2	36	7	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	79748641	79744593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_79744952_79745368_79745462_79745546
78549	chr6	-	3781	5	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	333.387443524797	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGATGCTGCTCATAGAA	4218	False	NA	NA	False	NA	NA	NA	35516753	35485843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35488788_35488893_35489253_35498834_35498919_35499616_35499731_35516473
78550	chr10	+	3043	14	Antisense	novelGene_ENSMUSG00000020075.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCGTCTTGAGGCTCCT	NA	False	NA	NA	False	NA	NA	NA	62417383	62434496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62418389_62418834_62418877_62420408_62420544_62421302_62421466_62423244_62423316_62423781_62423905_62424437_62424597_62425555_62425707_62426399_62426546_62427595_62427784_62428789_62428905_62429736_62429922_62430816_62430890_62434009
78551	chrX	+	4469	16	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-21	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	84.2565922247828	171	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAAAAAAATACCTATTGG	NA	False	NA	NA	False	NA	NA	NA	84091879	84248644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_84092066_84097576_84097639_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
78552	chr9	+	4064	4	NIC	ENSMUSG00000057982.9	novel	1766	5	NA	NA	0	1015	intron_retention	FALSE	canonical	3	112	junction_3	22.0907220343745	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAAATTATTTTTTATTGA	749	False	NA	NA	False	NA	NA	NA	22137018	22152406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_22137129_22146315_22147591_22148970_22149081_22149837
78553	chr2	+	5090	17	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	-9	-1406	intron_retention	FALSE	canonical	3	561	junction_4	172.1394783308	476	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGGGTAGCCTACAGT	7184	False	NA	NA	False	NA	NA	NA	29779787	29815351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
78554	chr11	-	8931	22	NNC	ENSMUSG00000017146.13	novel	6572	23	NA	NA	24	-12	intron_retention	FALSE	canonical	3	9	junction_21	98.3482174830137	12	169	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAGCAAACATTTTGACA	NA	False	NA	NA	False	NA	NA	NA	101442681	101379601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101426432_101430806_101430861_101439840_101439940_101441522_101441596_101442594
78556	chrX	+	3954	12	Antisense	novelGene_ENSMUSG00000031232.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	41	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGAACCGAGCCCTTGCCG	NA	False	NA	NA	False	NA	NA	NA	105011694	105055440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_105013005_105013104_105014636_105015044_105015086_105017790_105017884_105023012_105023087_105027315_105027380_105027971_105028062_105032576_105032721_105032993_105033137_105036003_105036121_105040426_105040600_105055266
78557	chr18	+	3037	24	FSM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	-93	-38	-7	18	multi-exon	FALSE	canonical	3	29	junction_23	153.127237455201	4	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTGTTGATTCTTGAGC	8957	False	NA	NA	False	NA	NA	NA	32970270	32999491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
78558	chr18	-	2580	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	153	12	0	-1	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	18	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAAAACACTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	64649570	64632729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
78559	chr13	+	3648	12	Antisense	novelGene_ENSMUSG00000116016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGCTAGACCGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	111562221	111626667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111563186_111570081_111570185_111572930_111573118_111574489_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589774_111589898_111590031_111603384_111603504_111623955_111624907_111626253
78561	chr9	-	1819	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	88	25	5	-25	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	368	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAAAATGGGAACTCTGAA	NA	False	NA	NA	False	NA	NA	NA	110775138	110768695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
78562	chr5	-	4811	16	NIC	ENSMUSG00000029207.17	novel	6632	16	NA	NA	-17	254	combination_of_known_junctions	FALSE	canonical	3	27	junction_11	22.2297098496584	26	133	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCATTTCGATAGGCAGTCT	NA	False	NA	NA	False	NA	NA	NA	66776048	66457749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557628_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
78563	chr4	+	2882	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-4	3327	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	38.4919816723071	14	136	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTGTGTGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	147576869	147601270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592102_147597142_147597327_147597411_147597596_147597930_147598133_147598801_147599091_147599343_147599761_147599862
78565	chr7	+	4532	31	FSM	ENSMUSG00000030447.16	ENSMUST00000032629.16	6440	31	4	1904	3	200	multi-exon	FALSE	canonical	3	493	junction_19	46.6292707308284	645	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGCGTTTGTTCATTGG	NA	False	NA	NA	False	NA	NA	NA	55491822	55580446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
78566	chr5	+	2390	3	ISM	ENSMUSG00000029110.14	ENSMUST00000182047.2	2944	8	13005	-12	-1179	0	3prime_fragment	FALSE	canonical	3	2294	junction_1	18.5	12	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	34507280	34510780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_34507416_34508133_34508183_34508574
78567	chr1	+	4248	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	-125	2	-125	-2	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	1543	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGGGCCTCCTGACTGT	9245	False	NA	NA	False	NA	NA	NA	87603835	87648222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
78568	chr15	-	2775	10	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-147	-7	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	813.305615799718	12	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGATCTTGACCTTCC	NA	False	NA	NA	False	NA	NA	NA	81283942	81247876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250622_81259031_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
78569	chr9	-	4298	17	NNC	ENSMUSG00000039542.17	novel	6050	18	NA	NA	-1354	1401	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	44.5564512023792	10	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTTGTGGAAGGTAT	9144	False	NA	NA	False	NA	NA	NA	49481203	49414946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_49416864_49419888_49420006_49421004_49421213_49431334_49431513_49434821_49434947_49454306_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125
78570	chr17	+	3181	4	NIC	ENSMUSG00000036036.16	novel	1749	5	NA	NA	0	-20	intron_retention	FALSE	canonical	3	426	junction_1	1260.20430442404	243	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGGGAGGGGAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	37313445	37321504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_37313670_37314177_37315796_37316941_37317087_37320310
78571	chr3	+	6170	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	16	2	16	-2	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	812	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAATGTATCCTATTTCT	NA	False	NA	NA	False	NA	NA	NA	10431982	10460395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
78572	chr12	+	4442	11	NIC	ENSMUSG00000020572.9	novel	4527	11	NA	NA	32	17	combination_of_known_junctions	FALSE	canonical	3	92	junction_2	260.465371978695	1217	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTTGATTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	32870365	32903365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_32870626_32880165_32880253_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
78573	chr18	+	3903	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	656	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATTGTCAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	3382931	3436377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
78574	chr4	+	4091	16	NIC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	1	1203	combination_of_known_junctions	FALSE	canonical	3	22	junction_2	149.780936333329	700	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTTAAGGATTATTTTG	5273	False	NA	NA	False	NA	NA	NA	108436651	108473233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108436773_108445872_108445979_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
78575	chr1	-	4615	24	NNC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	-7	672	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	126.424136864179	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACATACCTGTCCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	135358178	135311538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347087_135347722_135347816_135348029_135348092_135358005
78576	chr14	-	4121	10	NIC	ENSMUSG00000022034.11	novel	2913	11	NA	NA	10	662	intron_retention	FALSE	canonical	3	933	junction_7	64.172991511275	21	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGGCGTGGTGGCGCAT	6354	False	NA	NA	False	NA	NA	NA	66071433	66055824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
78577	chr5	-	3396	12	NNC	ENSMUSG00000029246.15	novel	4158	12	NA	NA	-50	-181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	240.384299758216	269	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACCAGTTTCAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	77099062	77061303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_77062314_77062356_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069392_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
78578	chr16	+	5852	30	Antisense	novelGene_ENSMUSG00000022822.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACGCGCAAGCGCGATGC	8982	False	NA	NA	False	NA	NA	NA	20150082	20245095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_20151454_20152333_20152501_20153855_20153970_20157625_20157705_20163384_20163544_20176117_20176309_20180931_20181022_20182724_20182914_20184356_20184483_20184561_20184717_20186791_20186921_20187172_20187321_20187775_20187960_20190868_20190970_20193740_20193885_20195260_20195465_20197196_20197266_20197386_20197517_20208118_20208189_20211195_20211673_20214764_20214872_20215728_20215879_20217562_20217711_20218224_20218401_20218557_20218789_20223314_20223464_20224138_20224294_20224475_20224637_20241055_20241236_20244997
78579	chr11	-	2563	10	NIC	ENSMUSG00000025130.12	novel	2861	11	NA	NA	-32	2	intron_retention	FALSE	canonical	3	1798	junction_6	93.1821526916336	4693	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3747	False	NA	NA	False	NA	NA	NA	120463699	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
78580	chrX	-	4453	23	FSM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	0	-302	0	302	multi-exon	FALSE	canonical	3	237	junction_4	39.3304500040447	458	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTTGTGTAAACAATGT	NA	False	NA	NA	False	NA	NA	NA	110372892	110297586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
78581	chr9	-	2914	15	NNC	ENSMUSG00000050471.18	novel	1962	10	NA	NA	18379	5827	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.7400594932257	16	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCCCGCCCCTTTCCCGC	NA	False	NA	NA	False	NA	NA	NA	35128362	35122433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124590_35124680_35124829_35125038_35125128_35125228_35125351_35125481_35125570_35125855_35126027_35126111_35126327_35126761_35126924_35127003_35127108_35127231_35127452_35127608
78582	chr3	+	2897	8	FSM	ENSMUSG00000028156.13	ENSMUST00000029803.12	4991	8	2	2092	2	1390	multi-exon	FALSE	canonical	1	7	junction_1	682.812550845279	4863	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGTAGGATGTATCTT	NA	False	NA	NA	False	NA	NA	NA	138231941	138263365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_138232056_138233028_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
78583	chr13	-	2759	14	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2751.08029561105	32	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	5123	False	NA	NA	False	NA	NA	NA	58549958	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58549877
78584	chr13	-	4314	14	NNC	ENSMUSG00000021710.12	novel	4162	13	NA	NA	-22	4	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_8	106.83095090378	630	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCACAGTACTTTTGT	NA	False	NA	NA	False	NA	NA	NA	104246144	104159560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104192153_104192280_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
78585	chr16	-	3221	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24696	2	-9989	-2	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	2	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACGCATTCCTGCAACC	NA	False	NA	NA	False	NA	NA	NA	22230568	22200067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
78586	chr11	-	1279	8	ISM	ENSMUSG00000018677.10	ENSMUST00000107098.8	1606	12	1550	159	869	1	3prime_fragment	FALSE	canonical	3	4398	junction_3	207.15123135782	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGGCTGTAGTGTCT	16	True	NA	NA	False	NA	NA	NA	102296765	102293969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518
78587	chr16	+	6151	12	FSM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	344	-531	344	531	multi-exon	FALSE	canonical	3	1304	junction_5	122.457278770872	825	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAAAGTCTCAGCAAGTG	NA	False	NA	NA	False	NA	NA	NA	56942409	56977599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_56942558_56953439_56953614_56955015_56955143_56957060_56957171_56958392_56958542_56960941_56961150_56963083_56963219_56965053_56965162_56966392_56966510_56968095_56968194_56970182_56970306_56972945
78588	chr2	-	5287	12	FSM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	104	199	-23	-199	multi-exon	TRUE	canonical	3	112	junction_2	17.5310821963508	327	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACTGCATAGGACTTAT	NA	False	NA	NA	False	NA	NA	NA	23045932	23005816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
78589	chr16	+	3060	25	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	81	623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	391.815324182055	1	161	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTTGATGTATAATG	NA	False	NA	NA	False	NA	NA	NA	48251680	48451886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300233_48330624_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48413009_48432637_48432710_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
78590	chr13	-	2852	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	648.158128224644	2	91	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTTTGGTCAAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	74498356	74470374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475041_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493050_74498264
78591	chr13	-	2794	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	-69	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	494.158184415163	1	92	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGACTTCCTTGAAATG	NA	False	NA	NA	False	NA	NA	NA	74498358	74470441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479413_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
78592	chr5	-	4303	17	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	-4	-10	intron_retention	FALSE	canonical	3	1194	junction_11	93.2405952026798	8	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATTTCTAAGCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	149559807	149540319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
78593	chr19	-	7574	34	FSM	ENSMUSG00000035049.5	ENSMUST00000038677.5	4340	34	-26	-3208	-26	3208	multi-exon	TRUE	canonical	3	269	junction_16	39.9184430265499	303	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCATTGATTGCCATGGA	NA	False	NA	NA	False	NA	NA	NA	41884638	41848081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
78594	chr5	-	8691	33	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	-8432	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	137.114228012404	694	39	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTAAATCATGGAATTAT	NA	False	NA	NA	False	NA	NA	NA	65864048	65763091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65777956_65780322_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815771_65816949_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65863839
78595	chr2	+	5475	15	FSM	ENSMUSG00000027395.16	ENSMUST00000103205.11	3998	15	-8	-1469	-8	1469	multi-exon	FALSE	canonical	3	224	junction_10	36.5564282853179	392	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAAATGGACTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	128942906	128969983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
78596	chr18	+	3766	11	NNC	ENSMUSG00000024576.15	novel	1222	11	NA	NA	-2	259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	774.205889928513	181	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAATGAGCCATGAAGAT	426	False	NA	NA	False	NA	NA	NA	61688342	61723391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496_61721705_61722282
78597	chr10	-	4582	14	NIC	ENSMUSG00000020075.9	novel	4722	15	NA	NA	-10	-4	combination_of_known_splicesites	FALSE	canonical	2	3	junction_8	183.632737409539	25	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTTAGTTCTTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	62438070	62416033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
78598	chr4	+	5227	8	NNC	ENSMUSG00000029076.15	novel	5177	7	NA	NA	-199	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	254.552749034098	2608	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGCCTGTGTGCACGT	NA	False	NA	NA	False	NA	NA	NA	156077129	156098062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156077162_156077344_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
78599	chr2	-	4627	6	FSM	ENSMUSG00000078903.11	ENSMUST00000109056.8	1956	6	112	-2783	71	-1066	multi-exon	FALSE	canonical	3	9	junction_4	88.9246872358852	2	183	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAACTTGCTTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	175048598	175033923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175043445_175043548_175044851_175044907_175048573
78600	chr19	+	6069	27	FSM	ENSMUSG00000024811.12	ENSMUST00000025729.12	6481	27	410	2	238	-2	multi-exon	FALSE	canonical	3	663	junction_17	101.711420291683	847	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTTCTCTTGATTGTGC	NA	False	NA	NA	False	NA	NA	NA	36812041	36870875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_36812137_36822933_36823159_36826688_36826785_36828899_36828937_36829877_36829954_36830201_36830297_36832290_36832358_36835202_36835390_36836454_36836577_36839485_36839578_36839686_36839766_36843351_36843524_36845039_36845120_36849012_36849159_36849822_36849989_36851196_36851417_36852663_36852774_36853584_36853774_36856634_36856888_36857909_36857993_36859076_36859198_36861465_36861564_36862882_36862958_36864465_36864572_36866108_36866296_36867291_36867449_36868140
78601	chr7	-	2730	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	17	475	7	1	multi-exon	FALSE	canonical	3	290	junction_21	336.211639490553	1	83	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153810	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
78602	chr7	+	3257	8	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	48	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	110.756950304784	1	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGGACTATAGCGTGTAA	NA	False	NA	NA	False	NA	NA	NA	12569011	12584506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580812_12581898_12582026_12582323
78603	chr13	-	3520	14	NIC	ENSMUSG00000032745.19	novel	3694	13	NA	NA	166	-11	combination_of_known_splicesites	FALSE	canonical	3	20	junction_7	408.363554812875	842	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCAGAATATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	111626396	111562224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111579854_111579941_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
78604	chr1	-	3285	8	NNC	ENSMUSG00000026484.14	novel	3160	7	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	238.380762132983	1010	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGTTATTAGATGTGTA	NA	False	NA	NA	False	NA	NA	NA	151376698	151345158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151359481_151359617_151376469
78605	chr1	-	2318	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-12	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	2048.43442600273	7	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287098	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278392_86278590_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
78607	chr11	+	3479	26	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	583.423614194695	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTTTTTCTTATGTGT	NA	False	NA	NA	False	NA	NA	NA	23206043	23246224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206643_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23244039_23244149_23244595_23244693_23245960
78608	chr4	-	2929	8	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	2301	5	546	-5	3prime_fragment	FALSE	canonical	3	1168	junction_5	184.331002187226	4	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGTGTCTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	141323234	141303377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
78609	chr4	-	2658	7	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	1049	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	571.914450673253	3	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTGTTTTTGTCTGGGG	NA	False	NA	NA	False	NA	NA	NA	141322731	141303368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310432_141312086_141312177_141316608_141316727_141317254_141317437_141322534
78610	chr16	-	3187	17	FSM	ENSMUSG00000012114.18	ENSMUST00000080936.14	3230	17	28	15	11	-15	multi-exon	FALSE	canonical	3	37	junction_9	64.8068946467118	2	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTATTCCTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	17540733	17469099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17470128_17470572_17470672_17471054_17471222_17471308_17471470_17471788_17471856_17472877_17472942_17473010_17473146_17473307_17473436_17473541_17473670_17489408_17489538_17490932_17491263_17492268_17492523_17498412_17498626_17501022_17501053_17503316_17503369_17515470_17515559_17540619
78611	chr14	-	3038	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	158	-1315	158	1315	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	7494	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGTTACGAGCAAATGATC	NA	False	NA	NA	False	NA	NA	NA	63746383	63728480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
78612	chr4	+	3939	8	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-40	-17	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_7	600.067547218219	340	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGCTTTAAAAAAAAAAATCT	4646	False	NA	NA	False	NA	NA	NA	135583382	135597202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135591039_135591142_135594436
78613	chr18	+	5051	14	NNC	ENSMUSG00000024603.9	novel	3738	13	NA	NA	-1	1921	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	50.0843076204761	635	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCCCGACTCGAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	60659284	60693759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299_60692206_60692801
78614	chr9	+	6122	18	FSM	ENSMUSG00000033054.8	ENSMUST00000035850.8	6062	18	-101	41	-101	-41	multi-exon	TRUE	canonical	3	111	junction_15	17.5635277962748	241	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATAATGAGAATTCATATA	NA	False	NA	NA	False	NA	NA	NA	53448245	53485601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_53448489_53456467_53456587_53460209_53460271_53461337_53461411_53462897_53462939_53463549_53463775_53465184_53465273_53466356_53466442_53467687_53467780_53467867_53467956_53469424_53469522_53470381_53470508_53473341_53474977_53478016_53478133_53478215_53478325_53481186_53481248_53481346_53482479_53483870
78615	chr6	-	3619	14	NNC	ENSMUSG00000040669.15	novel	3839	14	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	321.743659220381	3	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGGATGAAAGTTGGCC	9594	False	NA	NA	False	NA	NA	NA	122313976	122294713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302678_122302719_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816
78617	chr7	+	1108	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	52	-2	0	2	multi-exon	FALSE	canonical	3	7451	junction_1	3855.66202972978	2	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTTTAAATCTGGAAGTT	NA	False	NA	NA	False	NA	NA	NA	109118405	109121576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
78618	chr14	-	2976	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	215	-1310	-121	1310	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	7481	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTAACAGGTTACGAGCAAA	NA	False	NA	NA	False	NA	NA	NA	63746326	63728485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
78619	chr5	+	3335	22	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCCCCGCCTGCGGGCCG	NA	False	NA	NA	False	NA	NA	NA	100511686	100564085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100511807_100513589_100513854_100516152_100516210_100521236_100521575_100523066_100523191_100526685_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533986_100534063_100538617_100538687_100540247_100540490_100540722_100540875_100541061_100541221_100543657_100543760_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555139_100563960
78620	chrX	+	623	5	ISM	ENSMUSG00000041718.17	ENSMUST00000154827.8	4168	27	24702	26203	2289	2595	internal_fragment	FALSE	canonical	3	1083	junction_2	49.8998997994986	1	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTATTTTATTTTTGAG	NA	False	NA	NA	False	NA	NA	NA	143125720	143131243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955
78621	chr7	+	4587	39	NNC	ENSMUSG00000039187.17	novel	4645	38	NA	NA	13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	88.5434147076373	304	52	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTGTAGTTTTGAAAATG	NA	False	NA	NA	False	NA	NA	NA	79042072	79100013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79042140_79045640_79045744_79048883_79048957_79051569_79051613_79051661_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
78622	chr1	+	4042	13	NIC	ENSMUSG00000026276.21	novel	779	8	NA	NA	7	-2	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	262.793962386252	34	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGATTTTTACGTTTT	NA	False	NA	NA	False	NA	NA	NA	93406951	93437980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93407322_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
78623	chr9	-	3692	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	-26	1	-26	-1	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	156	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGCTGTATGCCACATT	NA	False	NA	NA	False	NA	NA	NA	75466965	75404989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
78624	chr17	-	3698	7	NNC	ENSMUSG00000117284.2	novel	3474	6	NA	NA	-23	-12	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_4	18.5779140080066	10	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAAGTTGAACTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	22533841	22504863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22507883_22508749_22508877_22511388_22511437_22528485_22528579_22531009_22531223_22532217_22532302_22533727
78626	chr16	-	6212	5	NNC	ENSMUSG00000022544.15	novel	695	4	NA	NA	-4	826	intron_retention	FALSE	non_canonical	0	0	junction_1	212.080615568703	4	103	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCTCACATCCGCCCT	NA	False	NA	NA	False	NA	NA	NA	5073824	5061189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_5064187_5064361_5067313_5068338_5068420_5070888_5070952_5073704
78627	chr11	-	3749	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	-301	-487	-298	487	multi-exon	FALSE	canonical	3	411	junction_2	109.5	1590	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATATGAGTGTTCAATC	NA	False	NA	NA	False	NA	NA	NA	11759260	11749800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11753064_11756095_11756216_11758894
78628	chr6	-	2832	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	-271	-5	-271	5	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	4	116	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8214	False	NA	NA	False	NA	NA	NA	145022181	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
78629	chr8	-	2721	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_14	862.759139814429	3276	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCAAAATCCTACACTGA	NA	False	NA	NA	False	NA	NA	NA	26337723	26306561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329958_26330039_26330104_26337606
78630	chr4	+	2506	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	8	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.443251190051	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTGCTTTGATTGT	902	False	NA	NA	False	NA	NA	NA	145237336	145265751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237497_145257381_145257486_145261385_145261513_145263160_145264778_145265253
78631	chr4	+	2806	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	47	-115	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	226.004916367371	1	160	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTTTCACATTATAGG	973	False	NA	NA	False	NA	NA	NA	145237407	145265643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257381_145257490_145261385_145261513_145263160
78632	chr10	+	2560	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	6	249	intron_retention	FALSE	canonical	0	0	junction_9	476.947411496628	3	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTAGGCCTTAATGTCC	1567	False	NA	NA	False	NA	NA	NA	79690444	79699901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698249_79698376_79698486_79698704_79698811_79698890_79698978
78633	chrX	+	6048	33	FSM	ENSMUSG00000025862.15	ENSMUST00000115072.8	5955	33	-89	-4	6	4	multi-exon	FALSE	canonical	3	50	junction_1	32.1178858854377	134	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTATGCTTTATCTCTT	NA	False	NA	NA	False	NA	NA	NA	41238199	41366056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_41238563_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312328_41313804_41313957_41315665_41315740_41317087_41317212_41318000_41318100_41318195_41318276_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41358257_41358385_41360121_41360200_41364139
78634	chr13	+	5271	19	NNC	ENSMUSG00000038518.16	novel	5997	18	NA	NA	-54	265	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	288.799986320577	2	209	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACAAGCTGTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	44885019	45074736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064077_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070005_45073281_45074328_45074388
78635	chr14	+	6243	7	NNC	ENSMUSG00000021806.5	novel	3976	17	NA	NA	-20	-22786	intron_retention	TRUE	canonical	0	0	junction_6	548.048862379583	22	72	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTCCCAAAGAGTGGCCC	NA	False	NA	NA	False	NA	NA	NA	19801312	19833412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19831743_19831847
78636	chr6	-	4376	33	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	29	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	126.731411204711	1	108	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGACTTTTAAGCATCCT	3522	False	NA	NA	False	NA	NA	NA	125168537	125144982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145120_125145232_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
78637	chr12	+	4464	22	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-33	-39	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	179.710967239153	495	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTCTTTGAGTCTTGT	3948	False	NA	NA	False	NA	NA	NA	83678992	83729858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
78639	chr5	+	9133	30	ISM	ENSMUSG00000018076.13	ENSMUST00000100816.8	9296	31	32638	0	31782	0	3prime_fragment	FALSE	canonical	3	9	junction_3	20.9318581897798	173	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGAGTGGCTCTTTTCCC	7417	False	NA	NA	False	NA	NA	NA	118731421	118903503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_118731636_118809077_118809163_118818952_118819037_118856547_118856694_118859439_118859635_118859829_118860004_118862052_118862219_118864325_118864431_118866212_118866945_118867834_118868061_118868976_118869083_118869392_118869518_118872023_118872124_118876379_118876601_118876859_118877066_118879890_118880841_118883073_118883254_118883706_118883931_118885383_118885577_118886628_118887047_118887673_118887894_118888910_118889100_118889595_118889820_118889931_118890075_118892327_118892487_118893603_118893781_118895141_118895300_118897166_118897329_118899350_118899464_118900765
78641	chr11	+	3445	9	Antisense	novelGene_ENSMUSG00000005204.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	119	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCACCGCCGATGGCGG	NA	False	NA	NA	False	NA	NA	NA	69563951	69572735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69564460_69564969_69565121_69565299_69565427_69567910_69567996_69568800_69568849_69568964_69569097_69569440_69569558_69569645_69571679_69572491
78642	chr5	-	7044	32	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-10	-505	at_least_one_novel_splicesite	FALSE	canonical	2	120	junction_16	38.9079599109602	1	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGACCAGCAAAGCAGTAAT	9600	False	NA	NA	False	NA	NA	NA	135518122	135435893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135439727_135440041_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
78643	chr6	+	3086	10	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCATTAGGCATCAGGAT	677	False	NA	NA	False	NA	NA	NA	122294856	122309547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298827_122299043_122299283_122299431_122299965_122300777_122302418_122302904_122309475
78644	chr14	+	4468	41	NNC	ENSMUSG00000021843.18	novel	4484	42	NA	NA	36	-2	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	219.532854887372	1	112	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACATGACTCACTCTGAT	NA	False	NA	NA	False	NA	NA	NA	47886808	47974012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_47886897_47887855_47888029_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963682_47963767_47963927_47964012_47967796_47967881_47970683_47970780_47973556
78645	chr17	+	366	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	23	1460	23	-1460	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCCTACCATGGTGACCAC	NA	False	NA	-2	True	NA	NA	NA	40157266	40157632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40157600
78646	chr2	+	2360	6	NNC	ENSMUSG00000078875.11	novel	683	5	NA	NA	4	587	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	55.515763527128	1	78	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAACACTTCTACATC	NA	False	NA	NA	False	NA	NA	NA	176692752	176705167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176703022_176704459_176704573
78647	chr2	+	4015	6	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	23	2465	intron_retention	TRUE	non_canonical	0	0	junction_5	83.2706430862642	2	186	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGAGTTCCAGTCCCGAC	NA	False	NA	NA	False	NA	NA	NA	177190030	177204021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246_177200885_177200967
78648	chr8	+	6739	17	ISM	ENSMUSG00000036990.14	ENSMUST00000173078.8	7354	21	12051	-11	-73	11	3prime_fragment	FALSE	canonical	3	98	junction_6	45.0696942939488	236	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTAAACTCTTGAAAATGA	NA	False	NA	NA	False	NA	NA	NA	80378297	80404364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_80378374_80379991_80380074_80382288_80382422_80385537_80385593_80385812_80385931_80386026_80386092_80387666_80387765_80390353_80390455_80390550_80390741_80391609_80391773_80393344_80393469_80394229_80394286_80395065_80395141_80395902_80396042_80396552_80396808_80397674_80397716_80399396
78650	chrX	+	5889	30	NIC	ENSMUSG00000037369.18	novel	5918	29	NA	NA	-24	-147	combination_of_known_junctions	FALSE	canonical	3	16	junction_13	47.6051186808053	209	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTAAAATGTCAGACTGG	NA	False	NA	NA	False	NA	NA	NA	18028851	18146028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_18029412_18029622_18029687_18065396_18065506_18074974_18075025_18083176_18083236_18088995_18089117_18100098_18100154_18102899_18102935_18105079_18105174_18107940_18108068_18112204_18112304_18112435_18112656_18113213_18113349_18113805_18113962_18114508_18114599_18115991_18116094_18116945_18117342_18120242_18121022_18124074_18124205_18127761_18127868_18128468_18128675_18130186_18130252_18130324_18130400_18130800_18130950_18135386_18135502_18138083_18138272_18139186_18139329_18141273_18141401_18143614_18143786_18144864
78651	chr18	+	4013	11	FSM	ENSMUSG00000024576.15	ENSMUST00000170862.8	2259	11	163	-1917	163	38	multi-exon	FALSE	canonical	3	229	junction_5	708.334701959462	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCTCTTATGACCCACAA	656	False	NA	NA	False	NA	NA	NA	61688572	61723170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
78652	chr9	-	3778	16	NNC	ENSMUSG00000032582.15	novel	648	8	NA	NA	-934	-2380	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.4943628353702	3	120	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTACAGTGTACTTACATA	NA	False	NA	NA	False	NA	NA	NA	107729566	107657534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107657577_107657920_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323
78653	chr14	-	6130	10	FSM	ENSMUSG00000035078.7	ENSMUST00000058679.7	2570	10	260	-3820	260	-6	multi-exon	FALSE	canonical	3	201	junction_4	9.18936583472681	154	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTTGCCGTATGGAATCT	NA	False	NA	NA	False	NA	NA	NA	63781171	63757105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
78654	chr5	+	3922	4	FSM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	-4	-1837	-4	1837	multi-exon	FALSE	canonical	3	131	junction_3	47.4856703531591	49	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAGCAATTAACTAAATT	8366	False	NA	NA	False	NA	NA	NA	110144382	110160114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110144500_110154809_110154937_110155121_110155183_110156497
78655	chr16	+	2929	3	NNC	ENSMUSG00000062901.4	novel	8172	8	NA	NA	28407	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAATCTGATGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	19944748	19947964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_19945096_19945185_19946746_19946942
78656	chr16	+	5056	3	FSM	ENSMUSG00000006134.5	ENSMUST00000006293.5	5042	3	-20	6	-20	-6	multi-exon	FALSE	canonical	3	254	junction_1	8	331	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGCCTCGGTGTTTCAG	3439	False	NA	NA	False	NA	NA	NA	17269830	17305292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17270653_17286756_17287223_17301524
78657	chr2	-	1682	9	ISM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	22590	0	-4009	0	3prime_fragment	FALSE	canonical	3	609	junction_5	39.7271947159625	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGACCTAGTTGTTC	5614	False	NA	NA	False	NA	NA	NA	127651195	127643044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886
78658	chr11	-	3392	10	Antisense	novelGene_ENSMUSG00000002055.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	59	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCCTGTTTATGGAAAA	NA	False	NA	NA	False	NA	NA	NA	78213172	78204651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78206467_78206723_78206866_78210290_78210896_78211154_78211279_78211386_78211497_78211866_78211950_78212087_78212246_78212324_78212399_78212511_78212591_78212970
78659	chr15	+	7047	31	FSM	ENSMUSG00000055024.13	ENSMUST00000068387.11	9566	31	815	1704	-8	1191	multi-exon	FALSE	canonical	3	47	junction_8	16.0257085126784	117	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGGCTATCCACCGCA	3724	False	NA	NA	False	NA	NA	NA	81470412	81534574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81470924_81485108_81485747_81492397_81492575_81494555_81494818_81495610_81495725_81497370_81497617_81500232_81500327_81500926_81501065_81504200_81504319_81505262_81505438_81507648_81507727_81508725_81508836_81510538_81510677_81511303_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
78660	chr4	+	3973	16	FSM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	13	-369	13	369	multi-exon	FALSE	canonical	3	26	junction_15	162.820473733086	659	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCTAGCCTCCTGTGAT	6058	False	NA	NA	False	NA	NA	NA	40970918	41012977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41011526
78661	chr12	+	3321	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10201	725	intron_retention	FALSE	canonical	3	46	junction_1	45.4190366354119	320	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	17942188	17955401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17942310_17950660_17950788_17950987_17951049_17952389
78662	chr17	+	3299	12	Antisense	novelGene_ENSMUSG00000023940.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	209	15	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGGAACCAAGACAAAGGT	NA	False	NA	NA	False	NA	NA	NA	53982843	54004649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_53983742_53983934_53984122_53985934_53986730_53988472_53988516_53990580_53990661_53994113_53994309_53994738_53994887_53995017_53995149_53996238_53996455_53996944_53997056_53997353_53997634_54004434
78663	chr5	+	3918	5	Intergenic	novelGene_772	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	38.5640700652823	16	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTTGTTTATATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	104757264	104900801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104757425_104836648_104836776_104895405_104895467_104896979_104897892_104898143
78664	chr17	+	1681	4	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGAGATAGGCGGGCGCC	2603	False	NA	NA	False	NA	NA	NA	36145780	36149191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36146942_36147060_36147166_36147516_36147629_36148888
78665	chr11	+	4597	27	NIC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	-2	592	intron_retention	FALSE	canonical	0	0	junction_18	126.004296911799	14	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAATTTTTGATTTGGG	NA	False	NA	NA	False	NA	NA	NA	29080745	29112420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
78666	chr11	-	4089	15	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	1	-11	intron_retention	FALSE	canonical	3	632	junction_6	84.8068634111217	4	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGATAAAAGAGATAACTTTT	NA	False	NA	NA	False	NA	NA	NA	106146629	106139978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143827_106143906_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
78667	chr12	-	6180	23	Antisense	novelGene_ENSMUSG00000042700.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	245	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTCTCGGGTGAGATCA	NA	False	NA	NA	False	NA	NA	NA	82497048	82216145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_82216278_82216789_82216850_82281235_82281303_82387433_82389273_82404005_82404136_82409714_82409904_82419139_82419317_82431424_82431527_82434326_82434484_82442963_82443539_82444117_82444393_82449681_82449952_82463675_82463823_82467309_82467436_82469147_82469268_82471786_82472228_82479524_82479767_82480462_82480627_82484459_82484708_82487587_82487735_82493589_82493700_82496077_82496164_82496672
78668	chr11	+	3125	10	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	37	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	505.239877022126	14	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATTCTTAAACGAATCAG	NA	False	NA	NA	False	NA	NA	NA	109541783	109560473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555611_109557500_109557552_109558255
78669	chr2	-	2166	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	4427	-48	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	4143.8714970876	23	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGCTATAACTGCGTGA	8212	False	NA	-15	True	NA	NA	NA	154730275	154713385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102
78670	chr18	+	7633	6	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	25	-48	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	92.1194876234122	218	24	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAGACATTTACCCCTCT	NA	False	NA	NA	False	NA	NA	NA	82935903	83023391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_82935974_82973648_82975575_83004868_83006324_83011194_83011315_83012594_83012663_83019397
78671	chr17	-	1232	6	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-218	3003	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	335	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGGTGGAAAGACGGCT	NA	False	NA	NA	False	NA	NA	NA	35821666	35816970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817188_35817258_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
78672	chr11	-	3202	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9034	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	479.414068305144	2	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTATCTGCATTCAAGTG	390	False	NA	NA	False	NA	NA	NA	106615254	106545044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588097_106590424_106590712_106605727_106605755_106605844_106606011_106615168
78673	chr14	+	3834	6	NIC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	-16	-9	intron_retention	FALSE	canonical	3	2317	junction_3	146.911674144705	26	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCACCAATGAAGTCTTGG	NA	False	NA	NA	False	NA	NA	NA	14296775	14303768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_14296883_14296955_14298351_14298443_14300065_14300336_14300429_14302918_14303061_14303291
78674	chrX	-	4162	21	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	27.0766966227419	484	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTGCATCATCTAATAC	NA	False	NA	NA	False	NA	NA	NA	47683335	47630502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667434_47677579_47677627_47680549_47680639_47682390_47682476_47683240
78675	chr11	-	2505	1	ISM	ENSMUSG00000038615.18	ENSMUST00000167110.8	3547	4	4078	17	2790	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	2655	False	NA	NA	False	NA	NA	NA	96710761	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_96708300_96710800
78676	chr4	+	2730	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-5	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	204.063715540024	3	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGATTGTTTCCAA	907	False	NA	NA	False	NA	NA	NA	145237341	145265757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160_145264117_145264368
78677	chr2	-	3180	19	NNC	ENSMUSG00000017754.14	novel	754	8	NA	NA	-11	5660	intron_retention	FALSE	non_canonical	0	0	junction_1	154.741650485775	18	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTACCTCTGCTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	164699564	164675777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164676843_164677073_164677229_164677546_164677640_164678344_164678781_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
78678	chr2	-	1722	1	Intergenic	novelGene_2837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	103	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAACTTGCTTCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	174970633	174968911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_174968900_174970600
78679	chr15	-	3979	16	Antisense	novelGene_ENSMUSG00000115017.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGCAAGAAAGACACAAGA	NA	False	NA	NA	False	NA	NA	NA	12185538	12140517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12140745_12146238_12146481_12149611_12149806_12150258_12150550_12152885_12153088_12154535_12154650_12156346_12156493_12159682_12159843_12160566_12160774_12162196_12162349_12166226_12166371_12170899_12170998_12171842_12171940_12180706_12180818_12180926_12181024_12184041
78680	chr8	+	2477	16	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	7	-2095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	990.089302369572	16	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111760517	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772259_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
78681	chr9	-	4345	8	NIC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	-19	-4	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	125.395862965967	28	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACATTCTGATTGCAATC	2132	False	NA	NA	False	NA	NA	NA	58157088	58125362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_58127853_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
78682	chr6	+	1704	2	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	4538	39596	intron_retention	TRUE	non_canonical	0	0	junction_1	0	49	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAAGTTGTTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	122689064	122731188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122690738_122731157
78683	chr6	+	3133	13	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCCGGCTCCGCACCCGA	1087	False	NA	NA	False	NA	NA	NA	122295266	122316560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296510_122296861_122297012_122298838_122299043_122299283_122299431_122299965_122300777_122302418_122302908_122309478_122309637_122310249_122310400_122311028_122311112_122311933_122312042_122313815_122313974_122316459
78685	chr6	-	4390	32	NNC	ENSMUSG00000038252.14	novel	4629	32	NA	NA	15	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	187.693187330386	1	133	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGCATCCTGTCCTGG	3508	False	NA	NA	False	NA	NA	NA	125168551	125144975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148903_125149985_125150052_125150318_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154507_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
78686	chr16	+	4017	21	FSM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	-39	-4	-36	0	multi-exon	FALSE	canonical	2	173	junction_10	25.4173169315725	462	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTAGATCAGTACTTTG	NA	False	NA	NA	False	NA	NA	NA	48814511	48840072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
78687	chr4	+	6233	12	NIC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	35	-3	intron_retention	FALSE	canonical	3	54	junction_1	21.8151513046846	165	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATATAGCTGTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	148123568	148144002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829
78688	chr16	-	3992	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	-34	-5	-34	5	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	775	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGCTCTATACTAAGTA	NA	False	NA	NA	False	NA	NA	NA	4607888	4583319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
78689	chr7	+	4972	13	FSM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	-11	1	-11	-1	multi-exon	FALSE	canonical	2	280	junction_11	48.5005727343044	497	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGATGTACTCCTTTGCA	NA	False	NA	NA	False	NA	NA	NA	113113029	113170717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
78690	chr13	-	4745	12	FSM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	2	-813	0	813	multi-exon	FALSE	canonical	3	148	junction_3	30.0305629441708	284	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGATGGTTTATTTTTTT	9994	False	NA	NA	False	NA	NA	NA	103911114	103877306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
78692	chr14	+	3487	7	NIC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	-399	intron_retention	FALSE	canonical	3	1534	junction_5	73.9113583212275	2938	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTCTGACAATCGTGCTA	9014	False	NA	NA	False	NA	NA	NA	55777845	55786882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55782505_55782663_55782883_55785153_55785292_55785496
78693	chr14	-	6704	33	NIC	ENSMUSG00000053754.15	novel	8509	38	NA	NA	-18	-782	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	12.9661518481776	5	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAGATGGAGAACAAATG	470	False	NA	NA	False	NA	NA	NA	52495198	52441963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52442042_52442246_52442964_52443052_52443262_52444307_52444516_52444691_52444747_52445446_52445523_52447942_52448073_52449272_52449377_52449853_52449944_52450019_52450201_52450280_52450481_52450709_52450907_52451669_52451781_52451925_52452106_52452629_52452798_52453339_52453536_52453698_52453910_52455172_52455429_52455629_52455774_52457053_52457231_52458370_52458615_52458759_52458882_52459938_52460077_52462082_52462167_52463494_52463613_52464069_52464126_52464692_52464762_52464954_52465138_52468894_52469010_52470001_52470388_52472580_52472959_52474186_52475246_52495134
78694	chr3	+	4862	6	NIC	ENSMUSG00000028156.13	novel	856	8	NA	NA	-1	977	intron_retention	FALSE	canonical	3	1289	junction_1	304.757608600671	49	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAGCATTGCTCTTATTA	NA	False	NA	NA	False	NA	NA	NA	138233044	138262952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_138233076_138252081_138252189_138253419_138256088_138256653_138256768_138259342_138259483_138261150
78695	chr18	+	4120	15	NNC	ENSMUSG00000003779.17	novel	3107	19	NA	NA	-25	0	intron_retention	FALSE	canonical	0	0	junction_6	284.283273499931	3	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	6224	False	NA	NA	False	NA	NA	NA	34758034	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34758695_34759768_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761847_34761943_34762007_34762193_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
78697	chr17	+	3002	10	NNC	ENSMUSG00000061607.16	novel	649	4	NA	NA	134	2367	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	52.8220866636881	1	96	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTCCAACCTCCCACCT	9524	False	NA	NA	False	NA	NA	NA	36152701	36163878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152771_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161406_36162004_36162049_36163306
78698	chr11	-	3632	22	ISM	ENSMUSG00000025153.10	ENSMUST00000206589.2	8333	43	-2	7534	-2	-144	5prime_fragment	FALSE	canonical	3	375	junction_18	39.1925301781948	10	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGGAACCTGCAGCTGGA	NA	False	NA	NA	False	NA	NA	NA	120714923	120705464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707058_120707130_120707304_120707447_120707564_120707672_120707877_120707950_120708086_120708298_120708394_120708811_120709002_120709258_120709447_120709563_120710027_120710628_120710764_120710854_120710971_120711070_120711194_120711357_120711559_120711724_120711899_120712903_120713057_120713542_120713679_120714855
78699	chr1	-	6251	19	NNC	ENSMUSG00000026235.15	novel	6328	18	NA	NA	-43	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.2572354742914	17	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTGAAATCTGGTTGTC	NA	False	NA	NA	False	NA	NA	NA	77491768	77343828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_77345106_77345247_77346309_77349546_77350485_77351378_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
78701	chr10	+	5767	22	NIC	ENSMUSG00000005682.10	novel	4759	25	NA	NA	11	2	intron_retention	FALSE	canonical	2	164	junction_11	37.771841603774	19	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGCTAGTGTGGGATT	NA	False	NA	NA	False	NA	NA	NA	128139214	128157218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149613_128149710_128149911_128150051_128150424_128150594_128150694_128150791_128150863_128150966_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154908_128156116_128156315_128156602
78702	chr14	+	1446	11	FSM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	13	35	13	-35	multi-exon	FALSE	canonical	3	538	junction_2	112.951139879153	5535	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTTTCTTAGAATAAAA	NA	False	NA	NA	False	NA	NA	NA	62569529	62610406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
78703	chr1	-	5858	27	NNC	ENSMUSG00000026478.15	novel	7622	28	NA	NA	-7708	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	194.593203357413	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCTTGTGTGGCCTAA	7085	False	NA	NA	False	NA	NA	NA	153133915	153094670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_153095041_153095800_153097476_153099404_153099505_153102129_153102289_153103256_153103457_153104480_153104596_153104787_153104938_153106467_153106613_153107479_153107618_153109230_153109311_153110193_153110400_153115000_153115158_153116062_153116242_153117622_153117766_153118374_153118529_153118976_153119223_153122683_153122873_153122982_153123205_153124785_153124899_153125310_153125501_153125590_153125714_153126132_153126270_153126357_153126457_153126822_153126941_153127697_153127887_153130934_153131102_153133821
78705	chr5	-	993	6	Antisense	novelGene_ENSMUSG00000067274.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGGCCGCATGCCCGCGTG	NA	False	NA	NA	False	NA	NA	NA	115701571	115697573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115697597_115697843_115697948_115698799_115699062_115699155_115699302_115699388_115699584_115701308
78706	chr4	+	2584	1	Genic_Genomic	ENSMUSG00000085101.8	novel	NA	NA	NA	NA	22175	2459	mono-exon	FALSE	NA	NA	NA	NA	NA	59	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCCTTCCTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	145159010	145161594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_145159000_145161600
78707	chr4	+	2414	2	NNC	ENSMUSG00000085101.8	novel	375	3	NA	NA	22246	2512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCCCCTCCCCTCCCCTC	NA	False	NA	NA	False	NA	NA	NA	145159081	145161647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159222_145159373
78708	chrX	+	4196	7	FSM	ENSMUSG00000073125.11	ENSMUST00000137641.8	3780	7	-28	-388	-28	388	multi-exon	FALSE	canonical	3	979	junction_3	266.969203384127	40	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTTTGAATGTCTCCTA	NA	False	NA	NA	False	NA	NA	NA	72235784	72246924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72241992_72243351_72243451_72245455_72245552_72245645
78709	chr11	-	2998	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	49	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	717.347675468458	54	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5250	False	NA	NA	False	NA	NA	NA	88846242	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88827338_88827449_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
78710	chr8	-	4412	2	Antisense	novelGene_ENSMUSG00000065817.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	436	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTCGCCCCCTTCCCCCGG	NA	False	NA	NA	False	NA	NA	NA	13932063	13919665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_13919811_13927796
78711	chr9	-	1444	2	Intergenic	novelGene_1056	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGAGCCTCAGCTAA	NA	False	NA	NA	False	NA	NA	NA	57388333	57386795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_57387859_57387952
78712	chr1	-	2532	3	NNC	ENSMUSG00000040723.15	novel	5001	6	NA	NA	51020	2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	12	148	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGTTGGTTCTTATTCTGA	NA	False	NA	NA	False	NA	NA	NA	165484597	165476513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165477780_165482873_165483606_165484063
78713	chr1	+	3016	14	NNC	ENSMUSG00000026276.21	novel	3779	13	NA	NA	3	-790	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	409.150049876093	2	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTCGGTGTGAGTCCCAT	NA	False	NA	NA	False	NA	NA	NA	93406759	93437192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93406791_93407185_93407322_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431206_93433265_93433324_93434684_93434805_93435434
78714	chrX	+	4054	27	NIC	ENSMUSG00000041718.17	novel	4168	27	NA	NA	-4	-14	combination_of_known_junctions	FALSE	canonical	3	548	junction_3	189.502244292029	824	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCATGTAAAATTGCCAAAAT	NA	False	NA	NA	False	NA	NA	NA	143101009	143157427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_143101118_143102998_143103058_143105007_143105147_143119107_143119460_143120087_143120172_143121959_143122011_143122720_143122768_143123715_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134767_143134910_143135625_143135747_143136436_143136470_143136568_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556_143152858_143156543
78715	chr18	-	3614	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	54	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	339.479837398335	134	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	NA	NA	NA	35065006	35035837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047188_35064621_35064726_35064886
78716	chr11	-	3691	18	FSM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	0	-533	0	533	multi-exon	FALSE	canonical	3	283	junction_14	59.6645176908376	869	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAAGCCAAGCGGTG	1101	False	NA	NA	False	NA	NA	NA	107080207	107056955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
78717	chr4	+	1554	6	ISM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	8761	141	8761	-141	3prime_fragment	FALSE	canonical	3	5793	junction_4	208.339530574493	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGGGTCTGTTTTCTC	4864	False	NA	NA	False	NA	NA	NA	46459662	46472516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
78720	chrX	+	2387	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1365.53667461633	1	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199_100491912_100491970
78721	chr9	-	3535	13	NNC	ENSMUSG00000032423.13	novel	9450	12	NA	NA	-14	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	259.211464509835	186	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTTGTATGTCAGTTAC	NA	False	NA	NA	False	NA	NA	NA	88364263	88334499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88335509_88335636_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
78722	chr13	-	4522	11	NIC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-16	-94	intron_retention	FALSE	canonical	3	2035	junction_5	142.283554917636	13	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGATTGAATCTTTCTATC	NA	False	NA	NA	False	NA	NA	NA	97334819	97312932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97318522_97320184_97320315_97322075_97322178_97325469_97327787_97330629_97330776_97334533
78723	chr9	-	7721	28	FSM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	-119	-4491	-8	-16	multi-exon	TRUE	canonical	0	0	junction_13	167.860448931548	762	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTTACCATTTGTACAA	8183	False	NA	NA	False	NA	NA	NA	95394057	95338966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
78724	chr9	-	6593	22	NNC	ENSMUSG00000046111.19	novel	7188	27	NA	NA	3903	0	intron_retention	TRUE	canonical	1	1	junction_21	48.534019207234	3	99	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTGCTGTCCATCCA	NA	False	NA	NA	False	NA	NA	NA	15258297	15228210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235010_15235444_15235588_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255557_15258263
78725	chr18	-	4177	18	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	94	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCCTTCGGTGTAACACA	NA	False	NA	NA	False	NA	NA	NA	32996071	32970303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970624_32974092_32974195_32974947_32975066_32976812_32976948_32978643_32978696_32979879_32980014_32980192_32980370_32980640_32980763_32981348_32981414_32982124_32982210_32983436_32983581_32985035_32985145_32985533_32985701_32985913_32987912_32992271_32992380_32994078_32994175_32994551_32994704_32995978
78726	chr10	-	6484	12	NNC	ENSMUSG00000074802.12	novel	2111	12	NA	NA	14	-27	intron_retention	FALSE	non_canonical	0	0	junction_1	17.078815837558	202	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAATAAAATCCCAAATG	NA	False	NA	NA	False	NA	NA	NA	89279802	89244711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_89245622_89245828_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270154_89270224_89272364_89272472_89279716
78727	chr4	-	2891	14	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	340.582671627635	11	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122779650	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122776243_122776574_122779606
78728	chr16	-	6937	30	NNC	ENSMUSG00000022533.15	novel	7310	34	NA	NA	-5479	-13	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	62.4870212445675	407	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATGAATTAAATATGTCA	6417	False	NA	NA	False	NA	NA	NA	30181540	30131253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30134720_30140623_30140714_30141689_30141771_30147773_30147863_30151016_30151205_30152576_30152746_30155007_30155081_30156319_30156417_30157249_30157360_30157444_30157488_30158430_30158511_30158593_30158717_30159040_30159217_30159970_30160096_30162251_30162373_30162460_30162615_30163324_30163457_30166443_30166595_30166867_30166930_30168502_30168692_30169780_30169939_30170046_30170227_30171085_30171218_30173049_30173123_30174570_30174706_30176022_30176093_30178486_30178568_30180237_30180309_30180631_30180803_30181393
78729	chr4	+	3587	31	NNC	ENSMUSG00000053510.13	novel	4311	31	NA	NA	37	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	167.753738160038	88	20	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAACGTGTATTTAAAG	9977	False	NA	NA	False	NA	NA	NA	108857888	108918346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901833_108903797_108903871_108904802_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
78730	chr19	+	1656	13	Antisense	novelGene_ENSMUSG00000024853.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCCGCTTTGTCCCCATC	5647	False	NA	NA	False	NA	NA	NA	5333702	5344345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5333781_5333887_5333975_5334601_5334755_5336218_5336445_5336604_5336685_5336837_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338444_5341333_5341450_5343106_5343348_5344326
78731	chr15	-	4464	30	NIC	ENSMUSG00000034022.9	novel	4340	37	NA	NA	215	-7	intron_retention	FALSE	canonical	3	484	junction_23	50.4940631774788	1	58	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACGATTTCTTTCAGACG	NA	False	NA	NA	False	NA	NA	NA	76487562	76480023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76480133_76480208_76480348_76480419_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76487138_76487233
78732	chr9	-	4034	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	1	0	1	0	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	926	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGATCTGTTGGTAGTT	NA	False	NA	NA	False	NA	NA	NA	50571079	50545932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
78733	chr2	+	2214	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	253.330688034435	1	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTAATTTAAAAACACCAA	NA	False	NA	NA	False	NA	NA	NA	154713344	154730281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729730_154730103
78736	chr2	+	3254	13	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-83	-6	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	1141.70415996829	37	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTAGTGTCTGACTCCTC	NA	False	NA	NA	False	NA	NA	NA	162896523	162926602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896718_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
78738	chr2	-	4266	18	Antisense	novelGene_ENSMUSG00000093746.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.235294117647059	85	31	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACCCGGTCGAACGCAC	NA	False	NA	NA	False	NA	NA	NA	152737245	152689929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152690217_152696839_152696919_152709099_152709276_152711570_152711694_152715007_152715135_152717455_152717593_152718537_152718616_152722024_152722143_152722931_152723085_152724111_152724282_152726091_152726232_152726928_152727147_152730021_152730114_152731063_152731241_152732408_152732556_152733360_152733472_152734028_152734218_152735501
78740	chr10	-	2386	11	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-24	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	617.719483260808	8	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	8668	False	NA	NA	False	NA	NA	NA	128401880	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396131_128396799_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
78741	chr10	+	5181	3	NNC	ENSMUSG00000049764.9	novel	378	3	NA	NA	30	-273	intron_retention	FALSE	non_canonical	0	0	junction_1	75	211	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTCATTTTTAAATCT	NA	False	NA	NA	False	NA	NA	NA	75868517	75878795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75868910_75869447_75869509_75874067
78742	chr18	-	4017	22	NNC	ENSMUSG00000003778.15	novel	4468	22	NA	NA	-17	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	170.766313384251	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTAGTATGACCCTTTT	NA	False	NA	NA	False	NA	NA	NA	34757624	34731663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34732630_34732844_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
78743	chr6	-	3853	6	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	0	-66	intron_retention	FALSE	canonical	0	0	junction_5	1011.95375388404	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTTGGGTTTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	83294588	83282738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286537_83287393_83287502_83288191_83288345_83288793_83290529_83294406
78744	chr2	-	4498	23	FSM	ENSMUSG00000034032.16	ENSMUST00000139311.8	4714	23	6	210	1	-210	multi-exon	FALSE	canonical	3	111	junction_22	84.1204002340526	6	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCAGATCTTTGGTGTGT	488	False	NA	NA	False	NA	NA	NA	119617994	119597549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617701_119617779_119617895
78745	chrX	-	4765	9	FSM	ENSMUSG00000031119.5	ENSMUST00000033450.3	2651	9	-101	-2013	-101	2013	multi-exon	FALSE	canonical	3	220	junction_5	29.8493613834534	280	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCTCGCTGATTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	51254230	51139884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51142604_51142693_51142870_51143322_51143460_51145536_51145684_51145777_51145909_51151734_51151901_51163170_51163563_51180518_51180678_51253492
78746	chr1	-	761	6	ISM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	1075	7	640	4	3prime_fragment	FALSE	canonical	3	5309	junction_1	712.412801681722	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAATGTGTCGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	16173811	16171525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733
78747	chr4	+	4724	22	NNC	ENSMUSG00000028330.9	novel	3010	23	NA	NA	141	-5	intron_retention	TRUE	non_canonical	0	0	junction_12	146.261670271046	6	152	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTCTGGGAGTCATGG	0	True	NA	NA	False	NA	NA	NA	46138753	46172398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_46138887_46144784_46144874_46145373_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161328_46162091_46162167_46162960_46163065_46165196_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169127_46169244_46169944_46170074_46170471_46170586_46171910
78748	chr16	+	3389	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	-4	-340	-4	340	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	20	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCAGCACTCGGGAGGC	NA	False	NA	NA	False	NA	NA	NA	48251595	48451603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
78749	chr4	-	3411	19	NNC	ENSMUSG00000028633.8	novel	2705	19	NA	NA	367	-2	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_18	179.180610999139	4	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGGTGTGCTTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	120427106	120397066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120426272
78750	chr19	-	3763	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	6	2	-5	-2	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	1052	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTTAAGCCTCTCTTAA	NA	False	NA	NA	False	NA	NA	NA	32689725	32649039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
78751	chr11	-	2416	1	Genic_Genomic	ENSMUSG00000078812.11	novel	NA	NA	NA	NA	-734	91	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGGAAGCAAATAAACAGCA	8619	False	NA	NA	False	NA	NA	NA	69809864	69807448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_69807400_69809900
78752	chr17	+	3445	6	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-212	999	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	112.612610306306	1	134	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGAACATAATTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	17284162	17310889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306207_17307505_17308949_17309289_17309528_17309613
78753	chr17	+	4774	13	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-2	22	intron_retention	FALSE	non_canonical	0	0	junction_8	193.580445523015	20	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTTAAAGTTGGGCTTT	NA	False	NA	NA	False	NA	NA	NA	32255381	32279569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
78754	chr17	+	5244	23	NNC	ENSMUSG00000036636.11	novel	4067	25	NA	NA	25	-8	intron_retention	FALSE	canonical	2	2	junction_15	38.0807102857571	9	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTGTCTCTTCCAGTA	NA	False	NA	NA	False	NA	NA	NA	25352389	25381064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370729_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375708_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
78755	chr5	+	1285	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	318	2	162	-2	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	7	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCCCCAAGCCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	115697843	115701784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
78756	chr16	-	5424	21	NIC	ENSMUSG00000037965.16	novel	3825	23	NA	NA	-9	-27	intron_retention	FALSE	canonical	3	126	junction_3	16.4233827209866	19	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCTTACATAGAGATGAC	NA	False	NA	NA	False	NA	NA	NA	10994215	10954482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
78757	chr7	-	7560	35	ISM	ENSMUSG00000006307.17	ENSMUST00000006470.14	8469	37	2159	2	-1218	0	3prime_fragment	FALSE	canonical	3	47	junction_34	35.509209780545	213	18	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGTGGTCTTTCCGTGC	NA	False	NA	NA	False	NA	NA	NA	30285983	30268284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_30268862_30268940_30269071_30269182_30269267_30269362_30269471_30269715_30269894_30269978_30270054_30270125_30270264_30273384_30273492_30273572_30273663_30273749_30275050_30275277_30275503_30276042_30276204_30276298_30276378_30276455_30276577_30276721_30276881_30277907_30278046_30278127_30278220_30278304_30278421_30278931_30279006_30279145_30279251_30279350_30279441_30279514_30279700_30279863_30279978_30280439_30280558_30281074_30281171_30281262_30281410_30281592_30281707_30281832_30281932_30282212_30282308_30282608_30282888_30283124_30283181_30283341_30283622_30283873_30284025_30284117_30284232_30284418
78758	chr13	-	5434	15	NNC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	132	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.2471196372491	15	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTTTTGGTTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	64396324	64340363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64341394_64341491_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
78759	chrX	+	2620	15	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	712.778742468016	3	94	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-85	True	NA	NA	NA	74139639	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152305
78760	chr10	-	3631	3	NIC	ENSMUSG00000025358.17	novel	2673	4	NA	NA	2	-194	intron_retention	FALSE	canonical	3	1149	junction_2	80	3	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGCCTAGCCTCATATGG	8250	False	NA	NA	False	NA	NA	NA	128540897	128536200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128537314_128538281_128539697_128539794
78761	chr7	+	3319	8	FSM	ENSMUSG00000066979.7	ENSMUST00000084502.7	2218	8	-55	-1046	-55	1043	multi-exon	FALSE	canonical	3	1325	junction_6	52.1422700554033	1940	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCTCAGAAGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	131161895	131174667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
78762	chr2	+	4161	12	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	417.252148432936	20	64	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTCCAATAACTTGGC	4156	False	NA	NA	False	NA	NA	NA	127429330	127448749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436427_127437651_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
78763	chr10	-	4515	9	NIC	ENSMUSG00000055531.13	novel	6526	10	NA	NA	3	1747	intron_retention	FALSE	canonical	3	530	junction_2	33.7099299168657	11	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTAATTTTGCAGTGTCTC	4519	False	NA	NA	False	NA	NA	NA	117212830	117183196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
78765	chr5	+	3983	1	NIC	ENSMUSG00000050017.12	novel	2761	12	NA	NA	4208	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	111532242	111536225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_111532200_111536200
78766	chr6	-	2976	17	NNC	ENSMUSG00000015112.16	novel	3121	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_15	159.387107383251	393	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	6217173	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6191263_6191318_6216995
78767	chr3	+	1821	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	189	0	-69	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	8046	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	32762844	32781122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
78768	chrX	+	4159	12	NIC	ENSMUSG00000044150.13	novel	898	4	NA	NA	40	-339	intron_retention	FALSE	canonical	3	25	junction_1	205.09900854413	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGGGCAAGCTTATGCA	NA	False	NA	NA	False	NA	NA	NA	158309723	158375738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158350362_158350914_158351011_158357940_158358094_158375066
78769	chr19	-	3101	8	NIC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	20	0	intron_retention	FALSE	canonical	3	2829	junction_2	240.396950641124	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902403	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15895776_15896818_15896889_15898299_15898361_15902227
78770	chr4	-	3623	8	Antisense	novelGene_ENSMUSG00000095460.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	108.477402894684	1	166	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAGGCAGCCGAGATACAT	139	False	NA	NA	False	NA	NA	NA	146806004	146426593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146426701_146428055_146428158_146435244_146435315_146616520_146616603_146800369_146800517_146802049_146802597_146803016_146804181_146804600
78771	chr11	-	3922	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	-11	16	-11	-16	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	620	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTTGGGGAGGAAAGGGT	9447	False	NA	NA	False	NA	NA	NA	6150426	6055706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
78772	chr19	+	1286	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	55	-297	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3152.42719979383	5	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	898	False	NA	NA	False	NA	NA	NA	8944459	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945661_8946811_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
78773	chr7	+	1023	1	Antisense	novelGene_ENSMUSG00000107383.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCATAATGCCCAAGGTGG	NA	False	NA	NA	False	NA	NA	NA	116423669	116424692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_116423700_116424700
78774	chr19	+	1571	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	-30	-294	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2877.68455447461	29	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTGTCCTGCCTCCTTT	813	False	NA	NA	False	NA	NA	NA	8944374	8955549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945608_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
78776	chr19	+	1295	9	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	83	-297	at_least_one_novel_splicesite	FALSE	canonical	1	91	junction_2	3011.87634363946	6	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	2101	False	NA	NA	False	NA	NA	NA	8945662	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8945739_8946525_8946590_8946731_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
78777	chr19	+	1469	10	NNC	ENSMUSG00000071644.11	novel	803	6	NA	NA	222	-297	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	2875.81389875056	4	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	1065	False	NA	NA	False	NA	NA	NA	8944626	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944714_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
78778	chr19	+	4046	7	NIC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	107	-312	intron_retention	FALSE	canonical	3	8704	junction_3	438.522519376143	21	133	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAACATTGAACTTTT	2125	False	NA	NA	False	NA	NA	NA	8945686	8955531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8945739_8946525_8946590_8946727_8946871_8947207_8950473_8954681_8954855_8954948_8955074_8955307
78779	chr19	+	1208	8	ISM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	2136	297	961	-297	3prime_fragment	FALSE	canonical	3	8704	junction_2	394.754483243467	7	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	2979	False	NA	NA	False	NA	NA	NA	8946540	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
78780	chr2	+	3272	15	ISM	ENSMUSG00000017760.17	ENSMUST00000103092.9	3646	16	905	-4	-1	4	3prime_fragment	FALSE	canonical	3	800	junction_1	78.7051135439063	2333	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCAGTGTGGTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	164675725	164682956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
78781	chr14	+	1553	1	Intergenic	novelGene_611	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTATGTCAAGTTGACA	NA	False	NA	NA	False	NA	NA	NA	75609286	75610839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_75609300_75610800
78782	chr16	-	12682	86	Antisense	novelGene_ENSMUSG00000116118.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	177	17	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGTCTCAGCACTCTAGC	NA	False	NA	NA	False	NA	NA	NA	15660101	15455729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_15455906_15466582_15466659_15466749_15466843_15468512_15468588_15469293_15469402_15470099_15470214_15470312_15470418_15472546_15472600_15472682_15472714_15474117_15474276_15480844_15480994_15482071_15482236_15485451_15485621_15487144_15487194_15488374_15488501_15490118_15490272_15491830_15491944_15492300_15492461_15493141_15493229_15494765_15494882_15496060_15496225_15501998_15502108_15505222_15505320_15507139_15507297_15508125_15508276_15514986_15515094_15516659_15516885_15518503_15518597_15519912_15520019_15523034_15523167_15524585_15524839_15526570_15526794_15531441_15531651_15532009_15532143_15532777_15532936_15533724_15533930_15534868_15535061_15535597_15535698_15537206_15537375_15543194_15543325_15544365_15544572_15545445_15545627_15547702_15547870_15548301_15548368_15549411_15549481_15551838_15551993_15552762_15552900_15554614_15554741_15555687_15555825_15557295_15557446_15558060_15558193_15570597_15570712_15577348_15577472_15577563_15577712_15585727_15585904_15586412_15586514_15587657_15587864_15589885_15590076_15591460_15591678_15593719_15593832_15594890_15595023_15597239_15597420_15600918_15601127_15603773_15603911_15605006_15605195_15608310_15608539_15609736_15609845_15612890_15613003_15617729_15617916_15623783_15623959_15625895_15626091_15627458_15627654_15628566_15628713_15633753_15633966_15634432_15634521_15634612_15634756_15647476_15647682_15649130_15649202_15651538_15651757_15652006_15652102_15653013_15653104_15653751_15653826_15653895_15654096_15655824_15656014_15656946_15657088_15659633
78783	chrX	-	4137	20	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-75	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	28.9537791944314	41	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTGCATCATCTAATAC	NA	False	NA	NA	False	NA	NA	NA	47683456	47630502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47632167_47632281_47632319_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47682390_47682476_47683240
78784	chr4	+	2803	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	113	1433	113	-170	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAATGGAAAAATCAAGCTG	27	True	NA	NA	False	NA	NA	NA	40971018	41012438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
78785	chr1	+	667	5	NNC	ENSMUSG00000025967.17	novel	681	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1440.68653339302	22	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216458_63217624_63217725_63217990_63218058_63218406_63218533_63218616
78786	chr4	-	1668	5	NNC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	-48	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	400.681528773164	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAAACTTGTTTAGTTAT	NA	False	NA	NA	False	NA	NA	NA	122758473	122752858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756689_122756879_122758373
78788	chr6	+	2633	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	-36	0	-36	0	multi-exon	FALSE	canonical	0	0	junction_7	206.283558885983	2230	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5401	False	NA	NA	False	NA	NA	NA	125108835	125121716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
78789	chr1	-	6222	23	FSM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	0	5	0	-5	multi-exon	FALSE	canonical	3	93	junction_19	23.4067518690196	193	19	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCACCTCAGGGCCTGGGT	NA	False	NA	NA	False	NA	NA	NA	172125631	172099280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
78790	chr4	+	3371	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-265561	63390	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	185.140595224278	3	83	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146429856	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146429973_146697966_146698060_146797295_146797381_146800390_146800518_146802050_146802818_146803824
78791	chr4	+	3653	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159917	182154	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	164.939320939055	2	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGACTTGGCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	146426566	146806006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146603534_146603615_146797295_146797381_146800390_146800518_146802050_146802609_146803029_146804243_146804657
78792	chr4	+	3479	7	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-1783	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	196.66758474362	20	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	NA	NA	NA	146096695	146135330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146096839_146126781_146126867_146129876_146130004_146131535_146132091_146132170_146132766_146132934_146133402_146133823
78793	chr4	+	3551	10	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-30	182143	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	133.770487066006	2	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTAACAAGGTTGACT	NA	False	NA	NA	False	NA	NA	NA	146586453	146805995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146616526_146616611_146619877_146620005_146621233_146621402_146802221_146802609_146802693_146803236_146803320_146803647_146803814_146804188_146804699
78794	chr4	+	3478	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078497.10	novel	585	4	NA	NA	-4	2141	multi-exon	FALSE	canonical	3	5	junction_4	273.671774211372	1	202	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTTTAACAAGGTTGAC	4106	False	NA	NA	False	NA	NA	NA	147314736	147477602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147316807_147316901_147469673_147469759_147472778_147472906_147474017_147474089_147474656
78795	chr11	-	3637	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	3	-542	3	542	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	848	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGCGGTGGTGGTACAT	1104	False	NA	NA	False	NA	NA	NA	107080204	107056946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
78796	chr11	-	1753	14	Antisense	novelGene_ENSMUSG00000007739.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGGCGCCCCGCTTCG	7757	False	NA	NA	False	NA	NA	NA	22953328	22940794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22940879_22943264_22943319_22944296_22944386_22945927_22946037_22946312_22946456_22947030_22947154_22947601_22947736_22949032_22949175_22950861_22950953_22951359_22951468_22951554_22951690_22952164_22952400_22952814_22952928_22953135
78797	chr17	-	3261	16	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-5	99	intron_retention	FALSE	non_canonical	0	0	junction_3	164.302350020388	1360	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79244475	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228202_79229104_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
78798	chr17	-	4066	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	-1	5	-1	-5	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	1846	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTATATTAGTGTCTATT	NA	False	NA	NA	False	NA	NA	NA	79244496	79226439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
78799	chr17	-	3214	16	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-7	99	intron_retention	FALSE	non_canonical	0	0	junction_1	215.073878779673	2	115	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79244477	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227440_79227973_79228060_79228150_79228210_79229063_79229140_79229642_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
78800	chr17	-	3314	15	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-1	99	intron_retention	FALSE	non_canonical	0	0	junction_5	169.818165058022	1	112	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79244496	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79230623_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
78801	chr13	-	914	1	FSM	ENSMUSG00000114547.2	ENSMUST00000225150.2	1342	1	591	-163	591	163	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATACTATACATAGCAT	NA	False	NA	NA	False	NA	NA	NA	112731027	112730113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_112730100_112731000
78802	chr18	-	1610	1	NIC	ENSMUSG00000118057.2	novel	3579	4	NA	NA	21636	-2105	mono-exon	FALSE	NA	NA	NA	NA	NA	3	83	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTTTCTGATGGGCAT	NA	False	NA	NA	False	NA	NA	NA	82358089	82356479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_82356500_82358100
78803	chr15	+	1282	2	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98464	-570	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTTGAGCCAGCCAACC	NA	False	NA	NA	False	NA	NA	NA	98829307	98935421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98830297_98935128
78804	chr2	+	4653	14	Antisense	novelGene_ENSMUSG00000085815.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	328	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCCCCAGCTGGGCGAC	NA	False	NA	NA	False	NA	NA	NA	52581685	52632157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_52584950_52590016_52590184_52593113_52593264_52596409_52596468_52597931_52598017_52598153_52598238_52599607_52599703_52604829_52605017_52605699_52605772_52606438_52606583_52609707_52609808_52609913_52609990_52610895_52610983_52632073
78805	chr7	-	3748	20	NIC	ENSMUSG00000005610.18	novel	3548	22	NA	NA	25	0	intron_retention	FALSE	canonical	3	1102	junction_7	1162.05444444568	2	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682199	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
78807	chr11	-	4129	8	NNC	ENSMUSG00000086998.2	novel	596	2	NA	NA	25	7361	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCCAGCATGTCACCTTC	NA	False	NA	NA	False	NA	NA	NA	46037918	46027248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_46027289_46028190_46028268_46028365_46028476_46029663_46029800_46030516_46030603_46030830_46031054_46033741_46033897_46034616
78809	chr18	+	2826	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	-55	695	-55	2	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	1326	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCTGATTTTGCCTTA	NA	False	NA	NA	False	NA	NA	NA	24736962	24771869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
78810	chr4	+	7960	40	Antisense	novelGene_ENSMUSG00000028649.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	346	21	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTGAAACAGCTGGAGAAT	9537	False	NA	NA	False	NA	NA	NA	123243393	123295694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_123244939_123245614_123245743_123248846_123249061_123254702_123254837_123259065_123259143_123260089_123260243_123261667_123261831_123263597_123263761_123264377_123264502_123265566_123265752_123266140_123266283_123268102_123268236_123268523_123268718_123270161_123270324_123270847_123271020_123271892_123272011_123272138_123272348_123272451_123272606_123274207_123274378_123275014_123275148_123275556_123275754_123275892_123276051_123276139_123276312_123276403_123276507_123276898_123277002_123277093_123277217_123278437_123278665_123279247_123279481_123281010_123281225_123282911_123283133_123284318_123284424_123284842_123284964_123287862_123288069_123288797_123289043_123289707_123289794_123290889_123291213_123291539_123291700_123293134_123293305_123295187_123295359_123295545
78811	chr14	-	3813	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	-37	-1241	-13	-16	multi-exon	FALSE	canonical	3	157	junction_8	1522.21910380865	31	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCTGTTTAAATATGCTG	8712	False	NA	NA	False	NA	NA	NA	52341498	52311017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
78812	chr3	-	4355	24	NNC	ENSMUSG00000033222.17	novel	4541	23	NA	NA	30	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_19	56.9387957813331	3	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	100876949	100846175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870184_100870339_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
78813	chr12	+	3298	2	FSM	ENSMUSG00000032705.10	ENSMUST00000219757.2	5245	2	-147	2094	64	11	multi-exon	FALSE	canonical	3	232	junction_1	0	5	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATGTGAAGCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	80537727	80544907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80539673_80543554
78814	chr19	-	2079	17	ISM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	2696	1359	-20	4	3prime_fragment	FALSE	canonical	3	1425	junction_9	73.1752765198055	2167	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCTTTGGTTTAATGTC	NA	False	NA	-61	True	NA	NA	NA	27404529	27367456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
78815	chr8	-	3120	3	Antisense	novelGene_ENSMUSG00000052446.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTGGACGGCTCTGCTA	NA	False	NA	NA	False	NA	NA	NA	72724606	72704875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_72705004_72719636_72719763_72721740
78816	chr15	-	2705	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-49	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	2	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGATGGGAGGCATGAGT	709	False	NA	NA	False	NA	NA	NA	36793812	36771024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772930_36773000_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
78817	chr2	+	3525	19	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-5	-4	intron_retention	FALSE	canonical	0	0	junction_11	124.573705189704	4	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTGTTGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	130266253	130285650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280372_130280488_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285100_130285320_130285433
78818	chr2	+	3730	12	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-7	-763	intron_retention	FALSE	canonical	3	348	junction_5	29.8719028271116	2	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGGAGAAGTTTTCCAAA	NA	False	NA	NA	False	NA	NA	NA	130266277	130284556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130284171_130284254_130284425_130284506
78819	chr2	+	2517	10	NIC	ENSMUSG00000055612.16	novel	2424	9	NA	NA	11	-1	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	503.918644227419	3116	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTGTTTATTTTTGTT	8580	False	NA	NA	False	NA	NA	NA	72306513	72317236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72309373_72309957_72310063_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
78820	chr4	+	4623	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	0	-1247	0	-938	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	8456	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCCCCAAATGTGAAATTT	-7	True	NA	NA	False	NA	NA	NA	40722479	40736211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
78822	chr3	-	1289	11	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	-71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	537.498427904678	10	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGGGAGAGGGGATCGCA	NA	False	NA	NA	False	NA	NA	NA	98247240	98220556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220566_98222401_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
78824	chr8	-	3335	15	NIC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	7	0	intron_retention	FALSE	canonical	3	3119	junction_11	185.90045613671	4	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCTTGTATGGTACTTG	NA	False	NA	NA	False	NA	NA	NA	26337715	26306913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
78825	chr7	-	3405	2	Antisense	novelGene_ENSMUSG00000034690.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGATGTTGTGTTCCACTC	NA	False	NA	NA	False	NA	NA	NA	6092650	6088794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_6089120_6089570
78827	chr11	-	3203	20	NIC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	5	-5	intron_retention	FALSE	canonical	3	632	junction_6	78.119909252422	300	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATAACTTTTCTGATA	NA	False	NA	NA	False	NA	NA	NA	106146900	106139972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
78828	chrX	-	4587	26	NIC	ENSMUSG00000031161.16	novel	4142	29	NA	NA	-34	-33	intron_retention	FALSE	canonical	3	321	junction_16	43.4276593889194	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATTTAATAAAGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	7814040	7796395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7813271_7813363
78829	chr4	-	4064	12	NIC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	23	-12	intron_retention	FALSE	canonical	3	275	junction_11	201.094320207794	2	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779681	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
78830	chr10	+	2877	12	NNC	ENSMUSG00000019970.16	novel	2476	12	NA	NA	-446	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	361.667419481005	2	147	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTTTGGTTTGCAATAA	NA	False	NA	NA	False	NA	NA	NA	21867675	21875758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872003_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
78831	chrX	+	2401	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-47	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1423.23627839239	2	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473293	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485414_100486576_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
78832	chr17	-	3979	17	NNC	ENSMUSG00000024081.10	novel	4070	16	NA	NA	-11	-33	intron_retention	FALSE	non_canonical	0	0	junction_15	160.439228662288	192	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTGTATTAACATATTAA	NA	False	NA	NA	False	NA	NA	NA	79244481	79226467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243192_79243235_79243497_79244303
78833	chr4	-	1709	10	NNC	ENSMUSG00000007880.17	novel	8187	20	NA	NA	996	1899	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.2799572649298	5	34	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCAGCATCCACACCACA	NA	False	NA	NA	False	NA	NA	NA	133450194	133414898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133414982_133420163_133420220_133420315_133420462_133421068_133421382_133421973_133422142_133422882_133422973_133423226_133423468_133446847_133446965_133447860_133448311_133450149
78834	chr10	-	2995	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	-16	475	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	1482	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTGTTTGCCCCCTGC	5241	False	NA	NA	False	NA	NA	NA	62322541	62290538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
78835	chr17	-	5470	41	NIC	ENSMUSG00000002496.11	novel	5598	42	NA	NA	-1	3	combination_of_known_junctions	FALSE	canonical	3	52	junction_11	56.8017110217641	6	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCCCGTGGAGTTCAGA	NA	False	NA	NA	False	NA	NA	NA	24851570	24815491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24815741_24815828_24815928_24816019_24816112_24816178_24816258_24816865_24817006_24817157_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24820362_24820432_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450_24834574_24837839_24837957_24838388_24838545_24839723_24839806_24840033_24840138_24840600_24840739_24841498_24841643_24842449_24842577_24844241_24844316_24845219_24845346_24845668_24845718_24846964_24847083_24847915_24848061_24848842_24848954_24849886_24849974_24850918_24851086_24851511
78836	chr5	+	4358	3	Intergenic	novelGene_761	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	32	junction_2	30.5	3	43	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTAAATGTCCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	104719507	104734118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104719638_104728353_104728481_104730017
78837	chr14	+	2509	2	FSM	ENSMUSG00000021767.20	ENSMUST00000182996.2	606	2	0	-1903	0	371	multi-exon	FALSE	canonical	3	107	junction_1	0	32	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCCATGCCCTAGATAAA	NA	False	NA	NA	False	NA	NA	NA	21531501	21569082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_21531622_21566693
78838	chr2	-	3713	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	-68	38	-68	-38	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	1071	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAGAGTTCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	163487119	163465229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
78839	chr13	+	3519	5	Antisense	novelGene_ENSMUSG00000113841.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	271	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCGGAACAAGGCACACGGA	NA	False	NA	NA	False	NA	NA	NA	62598385	62614631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_62599176_62600577_62603006_62604498_62604561_62604745_62604874_62614520
78840	chr10	-	3425	2	Antisense	novelGene_ENSMUSG00000038587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	141	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCACGGTGTGAACCAGAG	NA	False	NA	NA	False	NA	NA	NA	4309458	4305495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_4307938_4308475
78841	chr14	+	5955	15	ISM	ENSMUSG00000007817.16	ENSMUST00000162645.8	7482	24	186494	143	-11112	-143	3prime_fragment	FALSE	canonical	3	32	junction_1	12.8478140759669	112	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTAGGTGTTCATGTGG	1407	False	NA	NA	False	NA	NA	NA	25646141	25667024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_25646282_25647140_25647432_25650091_25650275_25650948_25651030_25651642_25651818_25652270_25652413_25653746_25653958_25654922_25655029_25655520_25655682_25656446_25656515_25656747_25656817_25657169_25657415_25658530_25658698_25661690_25661946_25663363
78842	chr16	+	5163	6	NNC	ENSMUSG00000022750.19	novel	2596	7	NA	NA	-117	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	195.277853326997	43	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGGCTACAGTCTGAG	652	False	NA	NA	False	NA	NA	NA	17581839	17611243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17608854_17609682
78843	chr6	-	5271	6	Antisense	novelGene_ENSMUSG00000040242.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	476	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCCCCACCCCCGGTAA	1489	False	NA	NA	False	NA	NA	NA	146500696	146479393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_146479705_146487177_146487319_146490238_146490358_146491394_146491533_146494129_146496786_146498790
78844	chr13	-	4985	4	NNC	ENSMUSG00000041431.17	novel	2140	8	NA	NA	-12	2	intron_retention	FALSE	non_canonical	0	0	junction_2	1893.54945949546	14	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTTCACAATTCTCATTT	NA	False	NA	NA	False	NA	NA	NA	100923006	100915252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916294_100916529_100916796_100918850_100922412_100922889
78845	chr8	-	2800	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	89	0	at_least_one_novel_splicesite	FALSE	canonical	3	231	junction_3	1920.37050823243	450	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	43759884	43748103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43758716
78846	chr9	-	712	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	-38	-59	-38	59	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTGACTGTAACAT	NA	False	NA	NA	False	NA	NA	NA	22097555	22096843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22096800_22097600
78847	chr14	+	573	3	FSM	ENSMUSG00000012405.17	ENSMUST00000112598.9	802	3	261	-32	-246	-3	multi-exon	FALSE	canonical	3	10327	junction_1	2922.5	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTCATTTCTGCTTAAA	NA	False	NA	NA	False	NA	NA	NA	4199330	4200728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4199418_4199652_4199790_4200379
78848	chr9	+	590	1	Antisense	novelGene_ENSMUSG00000061167.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACAGCGGACCCTCAGAA	NA	False	NA	NA	False	NA	NA	NA	22096843	22097433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_22096800_22097400
78850	chr4	+	4055	8	NIC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	1814	junction_2	376.940584285684	13	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTCCAGTGTGTCACT	-10	True	NA	NA	False	NA	NA	NA	40722476	40733894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
78851	chr18	-	2646	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	97	2	0	-2	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	9	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGCTGACTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	64649626	64632719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
78852	chr8	+	3243	4	FSM	ENSMUSG00000052446.18	ENSMUST00000145256.8	504	4	-30	-2709	2	429	multi-exon	FALSE	canonical	3	61	junction_2	168.256418071413	1180	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTACTTTTTCAGCA	NA	False	NA	NA	False	NA	NA	NA	72704883	72724606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72705005_72719637_72719835_72719943_72720005_72721742
78853	chr8	-	2298	11	Antisense	novelGene_ENSMUSG00000031826.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGTGTCCTCGCCCGGGG	NA	False	NA	NA	False	NA	NA	NA	120684298	120668576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_120668872_120673805_120673906_120674439_120674550_120675156_120675211_120675415_120675524_120677098_120677198_120678659_120678840_120679920_120680083_120681525_120681671_120682934_120683000_120683318
78854	chr8	-	4650	15	NNC	ENSMUSG00000038225.16	novel	3943	14	NA	NA	5	10	intron_retention	FALSE	canonical	0	0	junction_13	56.7821202815945	23	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATAGTGTGTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	47070230	47028618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47066758_47066893_47070168
78855	chr4	+	3954	14	NNC	ENSMUSG00000028252.21	novel	3484	13	NA	NA	-661	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	159.938856660358	597	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTTTCTTTTTAATT	NA	False	NA	NA	False	NA	NA	NA	21727039	21750545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21727196_21727385_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482_21747577_21748136
78856	chr17	+	2720	5	Intergenic	novelGene_39	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	78.091292728447	893	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCCCCAAGTATGCTGCT	NA	False	NA	NA	False	NA	NA	NA	17399290	17426649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17399977_17400117_17422956_17423084_17423325_17423387_17424679
78857	chr5	-	2219	6	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	3	-525	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3769.20047755489	11	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGTTAAATGACTTTCA	6767	False	NA	NA	False	NA	NA	NA	148989847	148984036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985241_148985284_148985724_148986536_148986712_148987151_148987251_148987397_148987562_148989709
78858	chr4	+	2921	9	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	410	4	NA	NA	1	0	multi-exon	TRUE	non_canonical	0	0	junction_1	47.3623004086584	1	111	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146033868	146135325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034023_146036302_146036397_146102109_146102186_146126784_146126867_146129863_146130004_146131535_146132178_146133018_146133376_146133459_146133769_146134258
78859	chr14	+	2852	10	NNC	ENSMUSG00000040618.8	novel	3400	10	NA	NA	19	-288	intron_retention	FALSE	non_canonical	0	0	junction_7	516.755858490207	210	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGGATTGAACATAATAACA	8910	False	NA	NA	False	NA	NA	NA	55777741	55786993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785201_55785292_55785496_55785593_55785761
78860	chr2	+	2190	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_7	1043.51373573455	37	106	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116367	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118955_130119235_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
78861	chrX	-	3127	2	Intergenic	novelGene_3937	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	153	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGGAAAACATTTTAGTT	NA	False	NA	NA	False	NA	NA	NA	63981176	63976708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_63979786_63981126
78862	chr9	-	3654	13	NNC	ENSMUSG00000032423.13	novel	9450	12	NA	NA	-5	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	259.211464509835	2	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATGTCAGTTACTGGT	NA	False	NA	NA	False	NA	NA	NA	88364632	88334495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108_88364178_88364559
78863	chrM	+	1033	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	462	50	462	-50	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCACCATATCACACATTC	12	True	NA	-97	True	NA	NA	NA	5789	6822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6800
78864	chr18	+	1631	2	NNC	ENSMUSG00000046636.6	novel	801	2	NA	NA	48	719	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	58	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAAGGATGTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	27731744	27733528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_27732448_27732600
78865	chr11	-	5461	22	NNC	ENSMUSG00000033909.18	novel	5655	21	NA	NA	43	-44	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_19	41.9506242537992	356	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGATCTTGGTGCAAT	NA	False	NA	NA	False	NA	NA	NA	118180963	118150523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178425_118178453_118178572_118178650_118180782
78866	chr8	-	2629	5	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	272	673	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2152.31972241579	3	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTTGTGCTGAGTAA	NA	False	NA	NA	False	NA	NA	NA	43759701	43747426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757586_43758716_43758980_43759633
78867	chr3	+	992	9	FSM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	241	6	241	-6	multi-exon	FALSE	canonical	3	2544	junction_4	248.775972262194	9057	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTTGTTAATAGTCT	NA	False	NA	NA	False	NA	NA	NA	108164482	108187284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
78868	chr11	+	3961	9	FSM	ENSMUSG00000020458.17	ENSMUST00000102841.8	4060	9	99	0	99	0	multi-exon	FALSE	canonical	0	0	junction_2	396.201653202003	1094	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	29643872	29692916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29643963_29655534_29655592_29656409_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
78870	chr1	-	4839	13	FSM	ENSMUSG00000019699.17	ENSMUST00000111160.9	4735	13	-117	13	-79	-12	multi-exon	FALSE	canonical	3	18	junction_7	3.523729085311	56	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCAATCTGCTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	177076450	176849693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_176853016_176859215_176859319_176871340_176871429_176877603_176877819_176886899_176887029_176894776_176894900_176906339_176906409_176907766_176907833_176924532_176924665_176930527_176930673_176937192_176937305_176958536_176958663_177076241
78871	chr4	+	6235	16	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	396	-4	intron_retention	FALSE	canonical	3	682	junction_8	235.368326010296	22	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGACCTTTATCCGGAGTG	NA	False	NA	NA	False	NA	NA	NA	137346177	137385837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
78872	chr13	-	3898	7	NNC	ENSMUSG00000113019.2	novel	395	4	NA	NA	-372	30065	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	30.6467326516584	209	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTCTGACTCTCCAGTT	NA	False	NA	NA	False	NA	NA	NA	74670952	74627651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74627779_74654530_74657816_74659212_74659274_74659474_74659602_74670472_74670559_74670660_74670790_74670869
78873	chr15	+	820	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	10	7	10	-7	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	919	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAACAGACTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	83447802	83458397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
78874	chr13	-	3542	14	NIC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	-6	-2	combination_of_known_junctions	FALSE	canonical	3	56	junction_12	89.8987596257508	40	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGCTTGGTGAGGCTTTG	NA	False	NA	NA	False	NA	NA	NA	68730246	68708900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68728669_68728835_68730183
78875	chr11	-	2954	8	NIC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	76	intron_retention	FALSE	canonical	3	9657	junction_7	1598.96652847509	115	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGGCAAAAAGAAGGAACC	NA	False	NA	NA	False	NA	NA	NA	69563141	69558131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69561574_69561753_69561803_69563104
78877	chr6	-	4207	19	Antisense	novelGene_ENSMUSG00000025609.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	56	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGGGACCTTAGTTCAGT	NA	False	NA	NA	False	NA	NA	NA	31486629	31349841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_31349909_31351616_31351702_31395869_31395936_31403648_31403790_31405069_31405160_31408073_31408183_31409871_31410066_31426429_31426507_31428451_31428518_31435887_31436001_31445063_31445277_31451231_31451456_31454861_31454991_31466268_31466415_31467372_31467490_31469577_31469718_31473601_31473705_31476819_31476875_31484557
78878	chr4	-	5469	15	FSM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	-27	-2340	-27	2340	multi-exon	FALSE	canonical	3	662	junction_12	54.2776309771327	1067	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTCAAATTGGAACAGCAA	NA	False	NA	NA	False	NA	NA	NA	48473486	48428517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
78879	chr4	-	6774	29	NNC	ENSMUSG00000042446.17	novel	7102	30	NA	NA	19420	-5	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_15	36.6396371461848	204	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGGGTGAGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	126842272	126755736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126758111_126759289_126759420_126762509_126762759_126763975_126764088_126771421_126771574_126776007_126776104_126776232_126776405_126783307_126783403_126783788_126783969_126784807_126784862_126787087_126787260_126789072_126789189_126792088_126792234_126793724_126793763_126794397_126794539_126796335_126796487_126798189_126798363_126799071_126799223_126799664_126799941_126800313_126800430_126800878_126801030_126804582_126804796_126804902_126805078_126808864_126809121_126809373_126809459_126816856_126817028_126817361_126817424_126819294_126819817_126842226
78880	chr4	-	2740	14	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	-15	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	341.112693728165	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779672	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122776393_122776574_122779625
78881	chr5	-	2147	4	FSM	ENSMUSG00000034826.15	ENSMUST00000122893.2	631	4	-113	-1403	15	-868	multi-exon	FALSE	canonical	3	581	junction_1	53.8908361618395	44	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATACTTCTTTAAAAGT	NA	False	NA	NA	False	NA	NA	NA	92583063	92574476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92576186_92578659_92578813_92578897_92578982_92582862
78882	chr14	-	4359	8	NIC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-67	-73	intron_retention	FALSE	canonical	3	610	junction_1	28.4346727121115	3	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGTTGTTTGGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	40688831	40628476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
78883	chr16	-	5025	31	NIC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	-29	-3	intron_retention	FALSE	canonical	2	419	junction_30	127.736103832167	771	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCGATGACTGCTGTGG	NA	False	NA	NA	False	NA	NA	NA	8610201	8507466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
78884	chr10	+	3734	9	NIC	ENSMUSG00000063334.17	novel	5023	10	NA	NA	36	-799	intron_retention	FALSE	canonical	3	311	junction_5	38.4104071183839	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATTAAAGTATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	111808604	111822000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111808780_111811389_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
78885	chr1	-	3154	13	FSM	ENSMUSG00000026019.16	ENSMUST00000027173.15	10012	13	-238	7096	0	-13	multi-exon	FALSE	canonical	3	863	junction_12	56.5618515923547	2709	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTTTCCTGACTTAACT	NA	False	NA	NA	False	NA	NA	NA	60137305	60116039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
78886	chr10	+	3937	25	NNC	ENSMUSG00000020064.10	novel	3898	25	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_10	75.4061111397625	525	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACCAGTAGTTTCTATGG	NA	False	NA	NA	False	NA	NA	NA	63079613	63153654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121470_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
78887	chr3	+	6020	5	Antisense	novelGene_ENSMUSG00000027860.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.433012701892219	213	104	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATATCCCAGAAGCATGCT	NA	False	NA	NA	False	NA	NA	NA	102060953	102075000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_102063955_102064009_102065813_102070613_102070848_102072668_102072803_102074152
78888	chr12	-	2992	4	Intergenic	novelGene_4313	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	5	junction_3	55.5117605157282	174	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	21817680	21806837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_21809538_21810872_21810934_21811135_21811263_21817576
78889	chr10	+	2750	16	FSM	ENSMUSG00000058799.17	ENSMUST00000065917.16	1486	16	0	-1264	0	-2	multi-exon	TRUE	canonical	3	684	junction_15	463.449884621364	2504	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTGGTGATATTTGAAG	NA	False	NA	NA	False	NA	NA	NA	111309083	111334009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
78890	chr1	-	4072	24	FSM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	-18	-875	-18	875	multi-exon	TRUE	canonical	2	170	junction_8	40.7878461455702	466	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATTCTGAACCATGAAC	NA	False	NA	NA	False	NA	NA	NA	163822383	163780447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
78891	chr13	+	4480	2	FSM	ENSMUSG00000045767.10	ENSMUST00000057844.10	4652	2	158	14	158	-14	multi-exon	FALSE	canonical	3	233	junction_1	0	22	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTTAAAACCAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	55841094	55851299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_55841161_55846885
78892	chr16	-	2488	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	-76	-725	3	711	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	22	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAATGAATGTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	22084752	22064486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
78893	chr18	-	4634	12	Antisense	novelGene_ENSMUSG00000009535.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCGGAAACGCCGGCCG	NA	False	NA	NA	False	NA	NA	NA	68457532	68433474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_68433495_68436500_68436565_68438848_68439269_68440714_68440858_68442390_68442515_68444675_68444790_68446733_68446918_68447058_68447223_68451062_68451181_68452186_68452288_68453292_68453331_68454388
78894	chr19	+	5727	25	Antisense	novelGene_ENSMUSG00000024943.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGCAGCGGCTTCCGTTC	NA	False	NA	NA	False	NA	NA	NA	23183816	23251198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_23186335_23187616_23187710_23187786_23187967_23191113_23191233_23191427_23191533_23192006_23192104_23192517_23192592_23195769_23195895_23205537_23205661_23206278_23206405_23208923_23209091_23209181_23209359_23211327_23211460_23213237_23213332_23216247_23216363_23219999_23220153_23221216_23221475_23232040_23232113_23234851_23235013_23237009_23237151_23238693_23238830_23240965_23241129_23243027_23243081_23246088_23246233_23250997
78895	chrX	+	5767	7	FSM	ENSMUSG00000047694.13	ENSMUST00000054697.7	5211	7	-561	5	-73	-5	multi-exon	FALSE	canonical	3	206	junction_6	19.4736288919714	366	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATAAATTTGTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	97980805	97992618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
78896	chr12	-	1343	11	NNC	ENSMUSG00000041716.8	novel	2795	2	NA	NA	-17185	-16299	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCAACTGTCACCGGGC	1540	False	NA	NA	False	NA	NA	NA	102742116	102724289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_102724435_102727626_102727762_102728177_102728241_102729716_102729811_102732064_102732119_102732502_102732609_102734326_102734535_102735349_102735502_102736038_102736202_102737476_102737541_102741957
78897	chr3	-	2803	3	ISM	ENSMUSG00000033285.16	ENSMUST00000135812.3	398	4	-620	-538	-620	-17	intron_retention	FALSE	canonical	3	661	junction_2	39	7	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCACTTAAAATGACTT	NA	False	NA	NA	False	NA	NA	NA	100049557	100045512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_100046159_100046374_100046469_100047494
78898	chr16	+	3546	30	FSM	ENSMUSG00000038084.17	ENSMUST00000038867.13	3230	30	-52	-264	-6	261	multi-exon	FALSE	canonical	3	139	junction_4	99.4304230950511	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCATCAATTGTATATGACA	NA	False	NA	NA	False	NA	NA	NA	29398145	29470958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
78899	chr1	-	2594	13	NNC	ENSMUSG00000026341.17	novel	2554	13	NA	NA	-67	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	873.054547583114	1	133	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAAATTGAATTACCC	NA	False	NA	NA	False	NA	NA	NA	125363531	125320664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335139_125336262_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
78900	chr9	-	3117	19	FSM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	12	-172	12	172	multi-exon	FALSE	canonical	3	273	junction_16	368.954800838434	78	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTTACATTTGGTGAGT	NA	False	NA	NA	False	NA	NA	NA	64080374	64044253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
78901	chr9	+	3905	6	NNC	ENSMUSG00000057982.9	novel	1425	6	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	56.3418139573088	222	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAAGTTGCCTTGGTTGTG	740	False	NA	NA	False	NA	NA	NA	22137009	22154645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22152577_22153928
78902	chr4	-	1539	3	Antisense	novelGene_ENSMUSG00000082352.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	290	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTGAAAAGGCGGAACTT	NA	False	NA	NA	False	NA	NA	NA	145302498	145241442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145241587_145301000_145301730_145301832
78903	chr14	-	5568	22	FSM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	694	1380	-33	-1380	multi-exon	FALSE	canonical	3	262	junction_6	31.5683759207952	348	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTTTTTTAATGATAAGA	NA	False	NA	NA	False	NA	NA	NA	26692495	26642324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
78904	chr6	-	3128	10	NIC	ENSMUSG00000004980.17	novel	1542	11	NA	NA	-3	-3	intron_retention	FALSE	canonical	3	615	junction_1	2652.833872589	8	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTGTGCACTGCTACA	NA	False	NA	NA	False	NA	NA	NA	51446867	51437914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51438899_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
78905	chr11	-	2836	17	NNC	ENSMUSG00000000751.14	novel	5077	17	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	428.549948773477	47	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTCTTTGACTGTAAA	NA	False	NA	NA	False	NA	NA	NA	75239149	75191176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231170_75231853_75231933_75232969_75233021_75239051
78906	chr8	+	4577	6	NIC	ENSMUSG00000011306.8	novel	2963	8	NA	NA	7	-1959	intron_retention	FALSE	canonical	3	462	junction_4	14.961283367412	5	98	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCGGCGAAAGTCTGCC	2164	False	NA	NA	False	NA	NA	NA	70495469	70517602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70512056_70512402_70513310_70517486
78907	chr8	-	1098	4	NNC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	56	-159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1011.93906272397	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTGATTTTTATTTGGA	NA	False	NA	NA	False	NA	NA	NA	117720220	117708707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117709466_117710546_117710613_117715862_117715943_117720026
78908	chrX	-	5130	14	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	-8	-9	combination_of_known_junctions	FALSE	canonical	3	69	junction_13	54.6632509636699	72	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTCCTTTGCCCTGATTG	NA	False	NA	NA	False	NA	NA	NA	104972917	104895051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
78909	chr10	+	5647	17	NNC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	1	1	intron_retention	FALSE	canonical	3	88	junction_16	236.092200938002	20	113	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTATTGCAAAAATGTGTT	NA	False	NA	NA	False	NA	NA	NA	21171929	21244783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21243731_21244187
78910	chr13	-	3060	8	NNC	ENSMUSG00000021484.9	novel	4315	8	NA	NA	-3	-1005	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	857.229543235602	6	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTAAATGGTGTTTGGA	3008	False	NA	NA	False	NA	NA	NA	55510427	55492650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55510014_55510053_55510200
78912	chr13	-	1167	8	NNC	ENSMUSG00000021484.9	novel	4315	8	NA	NA	9	-158	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	845.695776824489	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATTTTGCTTCTTGCC	3020	False	NA	NA	False	NA	NA	NA	55510415	55494563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55509991_55510187
78913	chr15	+	3143	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	-21	-1185	-21	1185	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	4343	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTATGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	85220424	85348598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
78914	chr9	-	5022	7	NIC	ENSMUSG00000036986.17	novel	4343	8	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	178	junction_3	76.1389446268392	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTCTGTAATTTTGC	2152	False	NA	NA	False	NA	NA	NA	58157068	58125823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
78915	chr2	+	3553	18	NIC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-203	-1258	combination_of_known_splicesites	TRUE	canonical	3	33	junction_3	187.259104767536	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACCTTGTTACATGATAT	6870	False	NA	NA	False	NA	NA	NA	23046177	23088014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_23046744_23050203_23050336_23052512_23052676_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
78916	chrX	+	5582	16	NIC	ENSMUSG00000001127.13	novel	2358	16	NA	NA	4	-134	intron_retention	FALSE	non_canonical	1	16	junction_10	102.92383375854	37	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTCCACTCAGAACCTCT	6300	False	NA	NA	False	NA	NA	NA	20714808	20726602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20723762_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
78917	chr5	+	5306	11	FSM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	-60	6	-60	-6	multi-exon	FALSE	canonical	3	64	junction_1	131.697532247191	663	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAACCATTGTAGATGTC	NA	False	NA	NA	False	NA	NA	NA	53713115	53814694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
78919	chr5	+	3276	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	20	-152	-6	152	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	2017	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATATGGAGGTGCTTAA	NA	False	NA	NA	False	NA	NA	NA	31652104	31670400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
78920	chr11	-	6345	24	NNC	ENSMUSG00000017146.13	novel	6572	23	NA	NA	-10	10	intron_retention	FALSE	non_canonical	0	0	junction_14	74.5096636759045	15	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGACTGATTGGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	101442715	101379579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101415499_101415745_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
78922	chr5	-	2878	1	NIC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	9929	-2513	mono-exon	FALSE	NA	NA	NA	NA	NA	1	81	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAGCCCCAAACCCAAACA	NA	False	NA	NA	False	NA	NA	NA	148269610	148266732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_148266700_148269600
78923	chr5	+	4206	12	Antisense	novelGene_ENSMUSG00000041313.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	133	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATCCGAGCCGGTTTCAT	1407	False	NA	NA	False	NA	NA	NA	148266719	148336626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148269352_148270697_148270805_148271298_148271471_148272188_148272401_148273912_148274023_148277348_148277490_148278746_148278965_148279546_148279667_148282612_148282769_148284961_148285118_148301967_148302061_148336537
78924	chr5	-	3545	14	NNC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	25	-3252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.85655674939	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCGGGTCTTGATTACC	5443	False	NA	NA	False	NA	NA	NA	148336689	148267471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148268736_148269092_148269354_148270699_148270809_148271301_148271469_148272186_148272405_148273916_148274020_148277345_148277486_148278742_148278966_148279547_148279667_148282612_148282770_148284962_148285122_148288875_148289260_148301971_148302062_148336538
78926	chr10	-	4584	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	-3	-829	-3	829	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	544	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAATTAAAATATTGATCA	NA	False	NA	NA	False	NA	NA	NA	115087375	115032947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
78927	chr6	+	2617	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	17	-97	17	97	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	2915	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAACTTTTTAAATTGGCA	1234	False	NA	NA	False	NA	NA	NA	17636998	17667068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
78928	chr13	+	2095	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	158	2050	73	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588220	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
78929	chr18	-	2812	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	13	224	13	-224	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	6643	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGATCTCCTTTGTGAATG	212	False	NA	NA	False	NA	NA	NA	35087397	35070690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
78930	chr4	+	4268	17	NIC	ENSMUSG00000028614.15	novel	4584	18	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_11	152.290429771539	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATCTCTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	107225056	107273543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
78931	chr5	-	4147	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	17	122	17	-122	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	974	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAGGTATAAATTATAC	6414	False	NA	NA	False	NA	NA	NA	123859090	123836486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
78935	chr6	-	3883	5	FSM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	16	1101	16	-1101	multi-exon	FALSE	canonical	3	603	junction_3	40.9839907768875	1546	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGCTTAACAAATATACTT	NA	False	NA	NA	False	NA	NA	NA	81942923	81935932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
78936	chrX	-	8251	47	FSM	ENSMUSG00000031328.17	ENSMUST00000033699.13	8312	47	141	-80	-16	0	multi-exon	FALSE	canonical	3	112	junction_19	126.416146359915	421	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTTTCATGGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	73290020	73267066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73267584_73268357_73268562_73268645_73268865_73269003_73269181_73269807_73269941_73270466_73270583_73270803_73270942_73271096_73271364_73271457_73271581_73271691_73271845_73271926_73272131_73272365_73272528_73272624_73272799_73272986_73273116_73273431_73273573_73273661_73273765_73273906_73274003_73274111_73274360_73276572_73276597_73276754_73276945_73277527_73277685_73277768_73277893_73278209_73278381_73278470_73278632_73278715_73278879_73278961_73279136_73279225_73279824_73280348_73280612_73280727_73280846_73281026_73281197_73281287_73281379_73281461_73281623_73281709_73281834_73282704_73282849_73282939_73283054_73283257_73283452_73283551_73283689_73283810_73283935_73284018_73284157_73284708_73284910_73284992_73285156_73285248_73285327_73285406_73285526_73286097_73286246_73286333_73286432_73286522_73286772_73289669
78938	chr2	-	5088	24	NNC	ENSMUSG00000034032.16	novel	5458	26	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_15	139.960134750831	3	66	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	471	False	NA	NA	False	NA	NA	NA	119618011	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600189_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604319_119604580_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119614452_119617915
78939	chr8	+	3603	5	NNC	ENSMUSG00000058748.10	novel	2364	4	NA	NA	-30	1091	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	75.6405975650642	569	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCCTGGGGTCTTGTAGC	NA	False	NA	NA	False	NA	NA	NA	4663136	4681322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_4663279_4674903_4675022_4675839_4675967_4676163_4676225_4678167
78940	chr16	+	3464	3	NIC	ENSMUSG00000022945.13	novel	2828	7	NA	NA	37	-2701	intron_retention	FALSE	canonical	3	960	junction_2	22.5	4	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGACAGGTTCGTAAGTA	4433	False	NA	NA	False	NA	NA	NA	93680855	93688475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_93684128_93684929_93685034_93688387
78941	chr18	+	3368	3	NNC	ENSMUSG00000036299.6	novel	1266	3	NA	NA	-6	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	399.5	1131	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGTGGTTCCTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	75138964	75142997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_75141028_75141241_75141898_75142348
78942	chr7	-	358	1	Intergenic	novelGene_3056	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGCTGAACTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	143103649	143103291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_143103300_143103600
78943	chr17	-	3285	6	FSM	ENSMUSG00000071267.12	ENSMUST00000091879.12	3265	6	-23	3	-10	-3	multi-exon	FALSE	canonical	3	43	junction_3	17.9041894538681	143	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTGGACTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	22181455	22145943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22173035_22181236
78944	chr9	-	5212	7	FSM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	-17	32	-17	-32	multi-exon	FALSE	canonical	3	263	junction_3	363.380272197353	1	158	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACACATTAAATAGTAGT	NA	False	NA	NA	False	NA	NA	NA	96993227	96957045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127_96982293_96992963
78945	chr3	+	5026	8	FSM	ENSMUSG00000037730.14	ENSMUST00000192715.6	5555	8	39	490	39	-490	multi-exon	FALSE	canonical	3	110	junction_2	33.260873624812	304	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATGTTAAATTCCATAGG	8252	False	NA	NA	False	NA	NA	NA	30656252	30673532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
78946	chr7	-	7149	25	NNC	ENSMUSG00000070427.5	novel	1594	7	NA	NA	3196	80689	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	169	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGGCCCGCGCCGGTTAC	NA	False	NA	NA	False	NA	NA	NA	101664166	101583402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101583520_101626582_101626657_101636931_101637019_101639779_101639860_101640852_101640934_101641842_101641924_101642429_101642518_101643867_101643988_101644603_101644761_101645023_101645141_101645227_101645346_101645639_101645779_101647275_101647403_101647504_101650864_101656689_101656760_101658295_101658416_101658498_101658718_101658821_101658980_101660037_101660285_101661085_101661315_101661946_101662085_101662374_101662551_101662734_101662852_101662942_101663147_101663440
78947	chr14	-	1658	2	ISM	ENSMUSG00000115737.2	ENSMUST00000226439.2	1758	3	204	11	194	-11	3prime_fragment	FALSE	canonical	0	0	junction_1	0	26	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGAAGATTGTATT	NA	False	NA	NA	False	NA	NA	NA	49359965	49349588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_49351160_49359878
78948	chr1	-	3860	8	FSM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	-1025	-271	-1025	271	multi-exon	FALSE	canonical	3	189	junction_7	84.2663415993041	1217	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAACTCTTCGTAATTGGA	NA	False	NA	NA	False	NA	NA	NA	13198412	13183409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333
78950	chr3	+	4815	5	FSM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	-50	-285	-50	285	multi-exon	FALSE	canonical	3	107	junction_3	11.2333209693305	270	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTAGTAAAAACAAATTCT	5518	False	NA	NA	False	NA	NA	NA	27237063	27299392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_27237365_27276816_27277046_27280221_27280292_27293680_27293853_27295349
78951	chr5	-	3417	5	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	38	519	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	111.320202568986	37	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTTTCCAGTCTCTATTG	NA	False	NA	NA	False	NA	NA	NA	105007898	104960515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_104963302_104964564_104964626_104964862_104964990_105002948_105003026_105007532
78952	chr7	-	5773	31	NNC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	9	-35	intron_retention	FALSE	canonical	0	0	junction_20	41.5748989442214	1	168	14	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGATTTGTAAACCAATAAA	NA	False	NA	NA	False	NA	NA	NA	29979835	29939602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29941310_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960708_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
78953	chr9	-	3647	5	Antisense	novelGene_ENSMUSG00000032042.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCACACCAGCAGCCCCCG	NA	False	NA	NA	False	NA	NA	NA	35126895	35122490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_35123807_35124014_35124175_35124423_35124590_35124680_35124829_35125038
78954	chr16	+	2464	9	NNC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	7	-8	intron_retention	FALSE	non_canonical	0	0	junction_4	927.068489581541	34	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGACTTTGTTTTGTTT	1401	False	NA	NA	False	NA	NA	NA	20354275	20362798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360842_20360946_20361501_20362060
78955	chr5	+	1571	3	FSM	ENSMUSG00000029223.13	ENSMUST00000202339.2	228	3	-1052	-291	-1052	0	multi-exon	FALSE	canonical	3	490	junction_2	24	6	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	66839974	66844572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_66841099_66842115_66842175_66844184
78956	chr1	+	6975	16	Antisense	novelGene_ENSMUSG00000119049.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	174	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCGGGCGGAGGCAAACTA	NA	False	NA	NA	False	NA	NA	NA	170532568	170695393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_170537657_170574674_170574759_170614913_170615033_170616178_170616244_170621524_170621624_170622223_170622340_170627182_170627315_170642991_170643084_170646815_170647002_170662388_170662609_170668248_170668451_170669250_170669381_170676684_170676789_170680475_170680564_170682683_170682759_170695218
78957	chr7	+	3790	18	NNC	ENSMUSG00000030852.19	novel	2557	15	NA	NA	-23	0	intron_retention	FALSE	canonical	0	0	junction_2	117.529529529471	5	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGTGTGGCTGTGAGTTA	NA	False	NA	NA	False	NA	NA	NA	130247635	130366515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_130247755_130264745_130264872_130267101_130267267_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
78958	chr11	+	4513	14	NNC	ENSMUSG00000020463.16	novel	5125	16	NA	NA	127	-5	intron_retention	FALSE	non_canonical	0	0	junction_4	89.050148759465	85	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGATTCACGTGTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	29123016	29170792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138372_29147174_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
78959	chr5	-	4713	12	FSM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	-19	4	-19	-4	multi-exon	TRUE	canonical	3	99	junction_7	16.1496104397404	340	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTTTCACTGTGAACTG	NA	False	NA	NA	False	NA	NA	NA	92653515	92589176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92592144_92594162_92594322_92596403_92596456_92597729_92597804_92599205_92599325_92601898_92602069_92602590_92602711_92607900_92607993_92608612_92608802_92609795_92609944_92633055_92633214_92653050
78960	chr2	-	4370	34	NNC	ENSMUSG00000040383.17	novel	4352	34	NA	NA	5	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_29	67.6043152050476	189	10	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAATATACTCAGTAAAA	7815	False	NA	NA	False	NA	NA	NA	114005814	113935685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_113935843_113936280_113936456_113938584_113938671_113940364_113940536_113942962_113943135_113943699_113943888_113945060_113945133_113947003_113947142_113949157_113949380_113950390_113950527_113951685_113951796_113956371_113956483_113957436_113957507_113957993_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989497_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
78961	chrX	+	4392	8	NIC	ENSMUSG00000044150.13	novel	578	4	NA	NA	-46	10070	intron_retention	FALSE	canonical	3	25	junction_1	210.150771920485	124	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACATTTGTGTGCAAGTT	NA	False	NA	NA	False	NA	NA	NA	158309637	158344955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833
78962	chr9	+	4352	9	Intergenic	novelGene_1071	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	70	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCCCGAGGAGAGCCCGC	NA	False	NA	NA	False	NA	NA	NA	58125734	58157038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129152_58136640_58136694_58137114_58137648_58137773_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156825
78963	chr15	+	3235	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	224.467626965573	3	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-34	True	NA	NA	NA	101982358	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687_102004478_102004945
78964	chr3	-	2566	1	Genic_Genomic	ENSMUSG00000027809.15	novel	NA	NA	NA	NA	23841	1511	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCCTATGAAAAAGTATA	9233	False	NA	NA	False	NA	NA	NA	79512149	79509583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_79509600_79512100
78965	chr7	-	5446	1	NIC	ENSMUSG00000052040.11	novel	6396	2	NA	NA	33069	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	309	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTATTTTGTTTGCCTCGG	NA	False	NA	NA	False	NA	NA	NA	63541549	63536103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_63536100_63541500
78966	chr13	-	5495	14	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	1324	-2	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	20.6391940579313	50	82	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGGTTTGTTGTATTC	NA	False	NA	NA	False	NA	NA	NA	64395132	64340360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_64344490_64344793_64344860_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041
78967	chr3	-	2706	14	NIC	ENSMUSG00000055436.19	novel	3106	13	NA	NA	12	-8	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	233.411691548387	723	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACAAGTCATGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	157742221	157716563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157729759_157729869_157732361_157732496_157737088_157737286_157742152
78968	chr3	+	3034	9	NNC	ENSMUSG00000038393.15	novel	2827	8	NA	NA	-4214	8	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	162.968363494268	2036	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	96461058	96469182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96461109_96465098_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
78969	chr16	+	6077	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-33	-297	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	620	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATGATTCTATTATTGG	NA	False	NA	NA	False	NA	NA	NA	29398118	29473405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
78970	chr9	+	2682	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	839.196349132129	5	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACTGAGGCGTTTGCATT	NA	False	NA	NA	False	NA	NA	NA	54493761	54511942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497205_54499444_54499547_54499677_54499762_54502449_54502565_54503285_54503474_54503971_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
78971	chr10	+	3952	11	NNC	ENSMUSG00000005683.9	novel	2926	11	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	464.838208412346	9	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGTTTGAGCTTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	128173602	128198343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189473_128193563_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
78972	chr15	-	3107	4	NNC	ENSMUSG00000116295.2	novel	655	3	NA	NA	-5	-489	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	295.96283550473	33	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGACATGAGATAACCAAGC	NA	False	NA	NA	False	NA	NA	NA	97065130	97055398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97055552_97056519_97059277_97064383_97064508_97065057
78974	chr16	-	2749	12	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	-18	57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	288.946075783603	59	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATAATATGTTTTGTAA	6248	False	NA	NA	False	NA	NA	NA	38370602	38345441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38345780_38345827_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
78975	chr8	+	2490	16	NNC	ENSMUSG00000005410.7	novel	3381	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	462.751077794531	3	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTGCTGTGTGAATACAA	NA	False	NA	NA	False	NA	NA	NA	75836196	75854322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839422_75842546_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
78976	chr15	-	4108	10	FSM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	392	-1900	-27	-1008	multi-exon	FALSE	canonical	3	194	junction_5	53.0869308043159	614	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCACCCACCCCCACTCC	NA	False	NA	NA	False	NA	NA	NA	44291311	44237566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
78977	chr16	+	5084	5	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-4	intron_retention	FALSE	canonical	3	1869	junction_4	121.990522172831	1	255	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
78978	chr11	-	2085	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	9	3	9	-3	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	592	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5210	False	NA	NA	False	NA	NA	NA	88846282	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
78979	chr5	+	3105	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	16	733	16	322	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	709	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTCTCAGTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	52991369	53024406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
78980	chr13	-	3747	5	NIC	ENSMUSG00000113204.2	novel	1989	6	NA	NA	-11	524	intron_retention	FALSE	canonical	3	4	junction_4	42.0081837265074	16	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTGACTCTCCAGTTA	5207	False	NA	NA	False	NA	NA	NA	74765440	74752539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74755855_74757240_74757302_74758318_74758446_74759382_74759507_74765320
78981	chr16	+	6480	20	NIC	ENSMUSG00000022637.12	novel	3864	19	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	15.1180030632521	133	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTGTATGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	51851968	52028410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_51852049_51852540_51852623_51853371_51853554_51867561_51867813_51932463_51932611_51951427_51951585_51956121_51956244_51959853_51959992_51961369_51961458_51963129_51963262_51972873_51973078_51984658_51984845_51986351_51986715_51994716_51994812_52003574_52003722_52006497_52006596_52006711_52006844_52009375_52009517_52014521_52014642_52024795
78982	chr4	-	4254	13	NIC	ENSMUSG00000028577.14	novel	2784	14	NA	NA	15	10	combination_of_known_junctions	FALSE	canonical	3	112	junction_4	172.276828260668	21	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGGTGCCATTATAACAC	NA	False	NA	NA	False	NA	NA	NA	94491357	94455740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
78983	chr5	+	4182	11	Antisense	novelGene_ENSMUSG00000088712.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	582	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCCTTTGCCGCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	92200023	92231578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92202913_92203242_92203364_92204128_92204256_92205825_92205930_92212183_92212365_92213610_92213714_92214350_92214441_92216182_92216357_92218214_92218296_92221016_92221138_92231387
78984	chr1	-	2906	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	-75	-1529	at_least_one_novel_splicesite	FALSE	canonical	3	146	junction_6	847.959003857039	102	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAAAAAAAACTGTTT	NA	False	NA	NA	False	NA	NA	NA	13730845	13695082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730686
78985	chr2	+	3391	17	FSM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	37	-59	37	59	multi-exon	FALSE	canonical	3	273	junction_13	41.1567126967157	534	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGAGTTTTGTAAATTT	1413	False	NA	NA	False	NA	NA	NA	109111119	109172151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
78986	chr11	-	1765	5	ISM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	986	-5	986	0	3prime_fragment	FALSE	canonical	3	3182	junction_2	152.739975121119	120	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	NA	False	NA	NA	NA	120471220	120468929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007
78987	chr2	-	4009	19	NNC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	948.544279409243	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGCAGTGTGCTCATTA	NA	False	NA	NA	False	NA	NA	NA	156022073	155989863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156017933_156019255_156019306_156020799_156020873_156021096_156021161_156021806
78988	chr5	-	2842	6	NIC	ENSMUSG00000029328.16	novel	1477	8	NA	NA	-15	2	intron_retention	FALSE	canonical	3	110	junction_5	383.038588134407	621	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCCTGCGTCAGGTAC	NA	False	NA	NA	False	NA	NA	NA	100186769	100182583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
78991	chr13	-	3503	8	NIC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-13	235	intron_retention	FALSE	canonical	3	3215	junction_5	289.259998857041	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAACTCTAAATCTACCAG	NA	False	NA	NA	False	NA	NA	NA	100923007	100915881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100922127_100922240_100922412_100922889
78992	chr14	+	1987	5	NNC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	117	2	intron_retention	FALSE	non_canonical	0	0	junction_1	1041.07093298199	2	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTTGGAGTACTATTAA	NA	False	NA	NA	False	NA	NA	NA	14296952	14303779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_14296961_14298807_14300065_14300336_14300429_14302918_14303061_14303291
78994	chr13	-	3916	11	NIC	ENSMUSG00000034928.17	novel	3941	11	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	163	junction_9	207.732520323612	650	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTGGCTGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	54835532	54827211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831964_54832150_54832302_54835306
78995	chr2	-	5240	3	FSM	ENSMUSG00000089824.11	ENSMUST00000109604.9	6635	3	27	1368	-13	-1368	multi-exon	FALSE	canonical	3	132	junction_2	80.5	6	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGCAACTATTTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	155953849	155935245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_155940293_155945268_155945318_155953705
78996	chr10	-	6803	25	NIC	ENSMUSG00000039116.8	novel	6507	25	NA	NA	-118	-3	combination_of_known_junctions	FALSE	canonical	3	71	junction_20	10.9657769395921	115	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATTCAGTTCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	14421041	14278329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_14281183_14285416_14285570_14286199_14286302_14296169_14296454_14298416_14298514_14302479_14302749_14303833_14303962_14307349_14307457_14308664_14308711_14310021_14310142_14312523_14312665_14314163_14314336_14315353_14315565_14316081_14316138_14317136_14317249_14319749_14319893_14323806_14323873_14324561_14324615_14326322_14326409_14331881_14331966_14333823_14333893_14342876_14343501_14344506_14344849_14411597_14411699_14420657
78997	chr14	-	2433	7	NIC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	2047	-10	intron_retention	FALSE	canonical	3	733	junction_3	40.8452363603558	3	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	3322	False	NA	NA	False	NA	NA	NA	54748866	54744653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54748512_54748597_54748721_54748804
78999	chr11	+	5398	29	Intergenic	novelGene_2368	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	307	25	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACCGCGGCGTGGAGCGG	1470	False	NA	NA	False	NA	NA	NA	58011503	58059326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_58012002_58012107_58012613_58013109_58013205_58015757_58016244_58017256_58017421_58019470_58019725_58020842_58021057_58021469_58021591_58025591_58025738_58027683_58027824_58028495_58028593_58029844_58029968_58030320_58030441_58032419_58032635_58036173_58036344_58037215_58037365_58038656_58038835_58039240_58039315_58041371_58041508_58042356_58042443_58045928_58046014_58046457_58046665_58047485_58047659_58051531_58051667_58054620_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
79000	chr14	-	2637	9	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	416	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGCTGATTCGTCACGTG	NA	False	NA	NA	False	NA	NA	NA	63380582	63359910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63360011_63370760_63370913_63371410_63371498_63373054_63373974_63375480_63375566_63375797_63375942_63376445_63376561_63379178_63379311_63379679
79001	chr16	+	6905	11	FSM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	159	25	48	-25	multi-exon	FALSE	canonical	3	85	junction_6	12.5415310070182	180	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTCATCCATTTATTAA	NA	False	NA	NA	False	NA	NA	NA	27207777	27270943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
79002	chr5	+	3416	13	NNC	ENSMUSG00000045482.17	novel	11581	63	NA	NA	1351	-7	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	34.757393298245	1	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGTATTTGCTGTGCC	5812	False	NA	NA	False	NA	NA	NA	144777145	144796579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781005_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
79004	chr5	-	4089	20	NNC	ENSMUSG00000029415.5	novel	5020	22	NA	NA	42	-884	intron_retention	FALSE	canonical	0	0	junction_5	107.093352499511	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATTTTGTTTTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	92457806	92432752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92434730_92436325_92436488_92437598_92437971_92438116_92438212_92438871_92438999_92439561_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
79005	chr17	-	1677	10	NIC	ENSMUSG00000023942.16	novel	2216	12	NA	NA	-185	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	763.540874260617	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGTGCATCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	45901222	45896127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182
79006	chr4	+	2181	7	NIC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	-684	262	intron_retention	FALSE	canonical	3	543	junction_1	39.6011363473323	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAGCCTGTTCCCCACA	588	False	NA	NA	False	NA	NA	NA	108460603	108472292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
79007	chr12	+	1519	6	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	0	821	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1506.03312048573	1	57	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTTAAATGCTTTGTAA	9259	False	NA	NA	False	NA	NA	NA	100165787	100173575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172360_100172493_100172658
79008	chr12	+	1418	5	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	90	811	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1532.38105166437	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTAAAAGTGGTGTTAAA	9349	False	NA	NA	False	NA	NA	NA	100165877	100173565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100165976_100169807_100169978_100171871_100171979_100172356_100172493_100172658
79009	chr9	+	3308	6	Antisense	novelGene_ENSMUSG00000025894.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2776	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGGGACCAGAGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	4294657	4309797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_4296838_4299295_4299369_4302468_4302628_4303089_4303214_4308691_4308919_4309252
79010	chr6	-	2489	9	ISM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	11191	568	9321	4	3prime_fragment	FALSE	canonical	3	888	junction_8	91.6787870774914	7	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTACCCTAATCCAGTTT	NA	False	NA	NA	False	NA	NA	NA	122302783	122295257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416
79011	chr13	+	3103	3	Antisense	novelGene_ENSMUSG00000094942.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	103	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTTATTTTTCGACCCA	NA	False	NA	NA	False	NA	NA	NA	62515631	62520129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_62518167_62519375_62519437_62519622
79012	chr9	+	4276	10	Intergenic	novelGene_1064	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGAGACAGGGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	58124469	58157068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58126011_58127104_58127853_58128997_58129152_58136640_58136691_58137110_58137369_58137772_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156825
79013	chrX	+	3314	18	FSM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	671	16	671	-16	multi-exon	FALSE	canonical	3	331	junction_3	37.9662935558211	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGGCATACAGTAACTTT	NA	False	NA	NA	False	NA	NA	NA	149830836	149872501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_149830978_149849176_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
79014	chr19	-	2487	14	Antisense	novelGene_ENSMUSG00000015176.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.266469355010597	1	95	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCACCCGGGAGGAGAGAC	NA	False	NA	NA	False	NA	NA	NA	46072970	46064319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46064587_46067139_46067208_46067320_46067458_46067565_46067698_46068348_46068529_46069746_46069851_46069968_46070114_46070684_46070813_46070951_46071065_46071177_46071384_46071514_46071801_46071956_46072065_46072189_46072280_46072447
79015	chr2	-	2283	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-43	2	intron_retention	TRUE	non_canonical	0	0	junction_7	4421.64781041808	28	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3693	False	NA	NA	False	NA	NA	NA	154734794	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729675_154730241_154730281_154734609
79016	chr7	-	3445	1	Antisense	novelGene_ENSMUSG00000077575.3_AS_novelGene_ENSMUSG00000065016.3_AS_novelGene_ENSMUSG00002074947.1_AS_novelGene_ENSMUSG00000046364.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCGCGATGGAGCGGAGG	NA	False	NA	NA	False	NA	NA	NA	109121910	109118465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109118500_109121900
79017	chr7	+	2568	1	FSM	ENSMUSG00000065016.3	ENSMUST00000083082.3	132	1	-924	-1512	-924	1512	mono-exon	FALSE	NA	NA	NA	NA	NA	190	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCATGTGGTCTTTGCATC	NA	False	NA	NA	False	NA	NA	NA	109118402	109120970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109118400_109121000
79018	chr1	-	5875	23	NNC	ENSMUSG00000042772.16	novel	3928	23	NA	NA	-119	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_18	80.4197279566905	302	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGGTGTGTAGAGGATTT	NA	False	NA	NA	False	NA	NA	NA	152778516	152712745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152719786_152720159_152720963_152721347_152721869_152722015_152724484_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152736513_152736617_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
79019	chr19	-	5998	6	Antisense	novelGene_ENSMUSG00000099118.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCGGCAGCGCACGCTG	NA	False	NA	NA	False	NA	NA	NA	40905329	40883151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_40883242_40885531_40885608_40891280_40891501_40896500_40896647_40899475_40899552_40899939
79020	chr13	+	2388	9	Antisense	novelGene_ENSMUSG00000041431.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	79	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTTCCCATTGGCGCC	NA	False	NA	NA	False	NA	NA	NA	100915260	100923077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_100916296_100916530_100916647_100917285_100917423_100917663_100917903_100918132_100918291_100919971_100920153_100921962_100922129_100922243_100922412_100922889
79021	chrX	-	3534	11	NNC	ENSMUSG00000031232.18	novel	1608	11	NA	NA	32	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	93.3683029726898	1	106	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATTACATGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	105055354	105011694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012837_105013670_105015086_105017790_105017882_105023011_105023082_105027310_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
79022	chr6	-	3721	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	-73	3	-66	-3	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	2490	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGTTTAGGTCTGTTCAG	NA	False	NA	NA	False	NA	NA	NA	127086586	127062081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
79023	chr11	-	3905	4	FSM	ENSMUSG00000042363.15	ENSMUST00000144441.8	913	4	4	-2996	4	222	multi-exon	FALSE	canonical	3	309	junction_3	21.6384431561566	26	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGCATGCCCTGACCTT	NA	False	NA	NA	False	NA	NA	NA	20780751	20773353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275
79024	chr1	+	5274	8	FSM	ENSMUSG00000025958.15	ENSMUST00000087366.11	8364	8	16	3074	3	217	multi-exon	FALSE	canonical	3	58	junction_3	12.7375389286621	18	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAAGCACAACTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	64571993	64640633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
79025	chr4	-	5505	19	NIC	ENSMUSG00000028906.18	novel	5074	18	NA	NA	8	5	combination_of_known_junctions	FALSE	canonical	3	36	junction_5	31.5264439267525	261	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGCCTGACTG	5317	False	NA	NA	False	NA	NA	NA	131802624	131650734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_131653245_131653814_131653920_131655802_131655884_131657004_131657107_131663049_131663179_131664325_131664776_131684953_131685131_131695098_131695287_131701994_131702168_131702848_131702947_131706120_131706274_131709763_131709852_131717025_131717245_131718521_131718598_131724809_131724853_131727510_131727616_131730895_131731106_131734268_131734733_131802490
79026	chr15	+	2264	6	NIC	ENSMUSG00000008690.16	novel	3302	20	NA	NA	24	-1	intron_retention	FALSE	canonical	1	369	junction_2	271.404200409647	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCTGTTGATCCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	89254259	89257028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_89254282_89254440_89254512_89254597_89254879_89254955_89255012_89255094_89255197_89255296
79027	chrX	+	865	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	86	4221	86	-4221	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	159	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTAAGCCCTGCCTTTGC	5433	False	NA	NA	False	NA	NA	NA	158155259	158168703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
79028	chr1	+	2934	16	NNC	ENSMUSG00000026192.14	novel	2845	16	NA	NA	-91	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	162.848068251771	62	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGTTTCTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	71596217	71618785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608118_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
79029	chr14	+	3048	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	-60	4404	-60	1815	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	5419	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAAGAGTTTTCATATC	NA	False	NA	NA	False	NA	NA	NA	79825070	79868232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
79030	chr4	-	4678	11	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-54	2	intron_retention	FALSE	non_canonical	0	0	junction_1	380.121940961055	18	95	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2559	False	NA	NA	False	NA	NA	NA	129229096	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129213347_129213567_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
79031	chr3	-	3148	7	NNC	ENSMUSG00000027506.16	novel	3081	7	NA	NA	13	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1236.9164280581	93	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGGGTTCTTTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	9069770	8993688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464_9069522_9069641
79032	chrX	-	5862	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	21	-3231	21	3231	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	1063	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGTTGCCTTGATTATG	NA	False	NA	NA	False	NA	NA	NA	73472779	73449857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
79033	chr8	-	2570	16	NNC	ENSMUSG00000031575.19	novel	3307	16	NA	NA	-434	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	869.393770905272	4	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTATGGTACTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	26331249	26306909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330894
79034	chr11	+	4341	11	NIC	ENSMUSG00000038335.14	novel	3389	15	NA	NA	3	-65	intron_retention	FALSE	canonical	3	655	junction_6	78.3416236747746	1	101	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTGGTGATCAGAATGG	NA	False	NA	NA	False	NA	NA	NA	74788942	74800103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74789307_74790007_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
79035	chr13	+	890	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-17	-21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7945	False	NA	NA	False	NA	NA	NA	74554510	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74555262_74555305
79037	chr5	+	7817	22	NNC	ENSMUSG00000029313.19	novel	1613	7	NA	NA	29	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	67.1788488471357	566	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGATTGGAGTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	103840268	104003176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_103840470_103863215_103863272_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078_103964116_103966800_103966853_103973845_103973901_103974008_103974047_103976213_103976377_103981335_103982326_103988921_103989020_103990092_103990334_103990853_103990955_103991073_103991135_103994099_103994234_103994901_103994974_103995579_103995718_103997215_103997443_103998567_104001803_104002369
79038	chr1	-	3057	3	ISM	ENSMUSG00000026034.18	ENSMUST00000129577.8	3191	4	6	2411	6	-1644	5prime_fragment	FALSE	canonical	3	126	junction_2	2.5	3	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGCCCTGGCTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	58463219	58457712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_58460468_58460932_58461094_58463078
79039	chr7	+	4940	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	241.585906045862	74	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTCAACATTGTGTGAAG	7239	False	NA	NA	False	NA	NA	NA	109617521	109656083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648229_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
79040	chr6	+	5491	34	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	5660	78	5072	-78	3prime_fragment	FALSE	canonical	3	85	junction_3	103.550903981255	2	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAGAACCAA	7268	False	NA	NA	False	NA	NA	NA	125078603	125107470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_125078658_125078844_125078973_125079125_125079262_125079433_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
79041	chr5	+	3194	14	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_13	271.240564420188	463	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGGCTAAGATTCATTCA	NA	False	NA	NA	False	NA	NA	NA	31652095	31670250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668116
79042	chr9	+	4046	15	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	-3	1328	combination_of_known_junctions	FALSE	canonical	3	112	junction_1	76.8975265651421	122	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGCTTTTCCA	NA	False	NA	NA	False	NA	NA	NA	114230172	114305294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
79043	chr7	-	5797	33	NNC	ENSMUSG00000063550.9	novel	6694	33	NA	NA	1	-819	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_32	48.3584334520619	1	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCTTTTTTTTTTTTT	9997	False	NA	NA	False	NA	NA	NA	101859356	101769423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859275
79044	chr5	-	3507	2	FSM	ENSMUSG00000046000.6	ENSMUST00000060265.6	3424	2	-82	-1	-82	1	multi-exon	FALSE	canonical	3	176	junction_1	0	431	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGAGTTAATAACATT	NA	False	NA	NA	False	NA	NA	NA	97540320	97530055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_97532729_97539486
79045	chr18	-	3843	13	NIC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	0	-3	intron_retention	FALSE	canonical	3	34	junction_11	1884.2900224989	2	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAACCAAAACACTTTGC	NA	False	NA	NA	False	NA	NA	NA	64649586	64632731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64647885_64647936_64648396_64648480_64649486
79047	chr16	-	1912	15	ISM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	12470	9	12418	-9	3prime_fragment	FALSE	canonical	3	989	junction_11	109.53894564147	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCGTGGCAGACGTTTT	1301	False	NA	NA	False	NA	NA	NA	3883221	3857843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096
79048	chr3	+	3784	23	FSM	ENSMUSG00000028059.17	ENSMUST00000176500.8	4492	23	64	644	64	-124	multi-exon	FALSE	canonical	3	97	junction_1	58.4462916553691	17	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGGGGGAGGGGAAGGA	9458	False	NA	NA	False	NA	NA	NA	88523513	88554715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
79049	chr2	+	4902	22	NNC	ENSMUSG00000026743.17	novel	3543	23	NA	NA	-49	2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_12	73.5962818246459	3	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTGCCCTGCCTTCTT	4593	False	NA	NA	False	NA	NA	NA	18069397	18217201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_18069548_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
79050	chr17	-	3140	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	2	-1221	0	-11	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	466	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAACAAATAATCCTGATAT	NA	False	NA	NA	False	NA	NA	NA	80514732	80507519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
79051	chr17	-	1156	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	25	2	25	-2	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	2	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTGGCTTGTGTTCTGGC	NA	False	NA	NA	False	NA	NA	NA	24388410	24382841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
79052	chr3	+	3270	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	-48	1204	-48	-1204	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	942	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTCTTCCGCATGTTTAT	NA	False	NA	NA	False	NA	NA	NA	104545935	104564574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
79053	chrX	-	2768	14	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	-20	70	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_13	513.660998423839	458	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	100129646	100122745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877_100129064_100129193_100129261_100129344
79054	chr11	-	5603	21	FSM	ENSMUSG00000033909.18	ENSMUST00000106296.9	5655	21	23	29	23	-26	multi-exon	FALSE	canonical	3	124	junction_6	17.6138439870461	412	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTAATGCATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	118181034	118150505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118175907_118176563_118176826_118178492_118178650_118180782
79055	chr11	+	1159	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	338	2	-167	-2	multi-exon	FALSE	canonical	3	35417	junction_1	0	7	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442334	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
79056	chr9	-	3809	7	NNC	ENSMUSG00000031988.11	novel	3575	6	NA	NA	13	437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	66.3209787489767	203	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCATTAAATCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	26941348	26918629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_26921334_26921659_26921803_26924020_26924197_26926452_26926618_26930613_26930771_26940694_26941060_26941249
79057	chr11	-	1344	9	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	-5463	95	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	129.697725500488	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTGTCAGGAACCAAGC	6020	False	NA	NA	False	NA	NA	NA	115485810	115476434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479211_115485510_115485608_115485734
79058	chr11	+	3657	9	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	42	-7	intron_retention	FALSE	canonical	0	0	junction_5	188.570941557813	2	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGGATGACCATAACTCG	NA	False	NA	NA	False	NA	NA	NA	78219282	78233601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78227513_78227657_78228614_78228730_78230168_78230315_78230834
79059	chr4	-	2874	14	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	16	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	340.582671627635	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779637	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122776243_122776574_122779606
79060	chr11	+	2229	6	Antisense	novelGene_ENSMUSG00000041654.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	46	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGGGGTCTTCTGTAG	NA	False	NA	NA	False	NA	NA	NA	113135688	113354897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_113137315_113138537_113138708_113141296_113141392_113196709_113196781_113260553_113260727_113354803
79061	chr8	-	7479	17	ISM	ENSMUSG00000031529.6	ENSMUST00000209904.2	3417	23	22802	-5111	22802	0	3prime_fragment	FALSE	canonical	3	117	junction_15	16.7965770322408	143	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTGTAGCATTCAGC	NA	False	NA	NA	False	NA	NA	NA	35334503	35293613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_35298876_35301591_35301749_35305537_35305725_35306041_35306148_35307121_35307197_35308906_35309005_35310068_35310190_35314434_35314518_35315735_35315974_35316306_35316496_35318251_35318362_35318767_35318988_35320377_35320544_35323081_35323228_35324607_35324688_35328668_35328841_35334434
79062	chr18	-	4429	10	NIC	ENSMUSG00000024293.17	novel	4545	11	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	2	3	junction_7	43.4275329403358	144	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTCTCACTAGCTTGC	2	True	NA	NA	False	NA	NA	NA	10610352	10566510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10593745_10595876_10596338_10596442_10610025
79063	chr11	-	2645	9	NIC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-69	intron_retention	FALSE	canonical	3	9657	junction_8	1495.97659887279	137	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCGTGAACATTTTAGAC	NA	False	NA	NA	False	NA	NA	NA	69563141	69558116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69561574_69561753_69561803_69563104
79064	chr16	-	5917	21	NNC	ENSMUSG00000022533.15	novel	7220	33	NA	NA	5898	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	67.2103228678452	91	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAATATTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	30170163	30131240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_30134720_30141689_30141771_30147773_30147863_30151016_30151205_30152576_30152746_30155007_30155081_30156319_30156417_30157249_30157360_30157444_30157488_30158430_30158511_30158593_30158717_30159040_30159217_30159970_30160096_30162251_30162373_30162460_30162615_30163324_30163457_30166443_30166595_30166867_30166930_30168502_30168692_30169780_30169939_30170046
79065	chr5	+	4089	14	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_5	265.053438845428	15	84	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815928	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822085_33822216_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008
79066	chr4	-	2621	13	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	107	-8	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_12	264.778786075387	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122779546	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779442
79068	chr4	+	2767	3	Intergenic	novelGene_2118	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	94	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGTTGACTTGGCTGTT	NA	False	NA	NA	False	NA	NA	NA	146802815	146806003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146803365_146803449_146804254_146804589
79069	chr11	+	2360	12	NNC	ENSMUSG00000017421.19	novel	2245	11	NA	NA	3	0	intron_retention	FALSE	canonical	0	0	junction_3	368.869862155492	3626	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	NA	False	NA	NA	NA	80274107	80287074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80274322_80276728_80276856_80277005_80277100_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
79071	chr1	-	2875	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	17	9	17	-9	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	553	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTACTTGTTGTTTG	9013	False	NA	NA	False	NA	NA	NA	171910345	171893588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
79072	chr6	-	3011	9	ISM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	11230	7	9360	0	3prime_fragment	FALSE	canonical	3	888	junction_8	91.6787870774914	31	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCATTGTCTTACTGCA	NA	False	NA	NA	False	NA	NA	NA	122302744	122294696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416
79073	chr19	+	2271	14	Antisense	novelGene_ENSMUSG00000024966.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2006	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGCCTCCTCTGCACC	1847	False	NA	NA	False	NA	NA	NA	6998069	7017487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_6998540_6999017_6999187_6999389_6999499_6999639_6999674_7002675_7002807_7003658_7003759_7005994_7006117_7006269_7006373_7006475_7006601_7009846_7010017_7011529_7011675_7012016_7012155_7012858_7013069_7017242
79074	chr5	-	4138	20	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	-7967	20649	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	890.350091435139	393	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGGCCCGCCCCAGGCGGC	NA	False	NA	NA	False	NA	NA	NA	117535079	117495518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117495537_117501653_117501825_117508755_117508998_117509150_117509285_117512176_117512278_117513832_117514007_117514561_117514669_117514751_117514863_117515453_117516668_117517100_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117534945
79075	chr14	-	781	6	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGCCGACGCGGGCGCT	NA	False	NA	NA	False	NA	NA	NA	76085738	76082775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082897_76083056_76083129_76083640_76083834_76084133_76084236_76084707_76084801_76085538
79076	chr2	+	4678	22	FSM	ENSMUSG00000027655.15	ENSMUST00000109478.9	3284	22	-2	-1392	-2	1392	multi-exon	TRUE	canonical	3	62	junction_9	12.5862106454921	238	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCAGCCAGCCAATTAAA	NA	False	NA	NA	False	NA	NA	NA	158636724	158701526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657349_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
79077	chr11	-	4023	16	Antisense	novelGene_ENSMUSG00000017548.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1058	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCCGCCGCCGGATTTG	NA	False	NA	NA	False	NA	NA	NA	79924949	79884281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_79884426_79886442_79886490_79886570_79886634_79889880_79889949_79898335_79898388_79901382_79901468_79904187_79904421_79905967_79906060_79910501_79910609_79912915_79913095_79915734_79915826_79915991_79916138_79916622_79916779_79919971_79920173_79920832_79920912_79922669
79078	chr6	-	2797	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	-102	-296	-102	296	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	2143	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGCCTTAGAAACTTCGG	8788	False	NA	NA	False	NA	NA	NA	47790466	47772778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
79079	chr11	-	5839	8	NIC	ENSMUSG00000018669.15	novel	2201	13	NA	NA	8	50	intron_retention	FALSE	canonical	3	831	junction_7	117.161322586441	654	107	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTGTGCACATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	96807232	96798591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802836_96803042_96807023_96807209
79080	chr1	+	3967	12	NIC	ENSMUSG00000026280.18	novel	4173	13	NA	NA	29	-1188	intron_retention	FALSE	canonical	3	287	junction_1	27.3356849085858	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAAAACAAAGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	93682655	93717144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93713689_93714232_93714327_93715407
79082	chr3	-	2671	10	NIC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-9	44	intron_retention	FALSE	canonical	3	2549	junction_6	101.739803687254	82	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCTGGGTCTCCCTGG	NA	False	NA	NA	False	NA	NA	NA	108352534	108333883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_108334298_108334575_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
79083	chr17	-	2578	4	Intergenic	novelGene_53	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGAAGTGACAATATCCT	NA	False	NA	NA	False	NA	NA	NA	17426650	17399709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17400131_17422956_17423081_17423322_17423383_17424677
79084	chr11	-	2118	12	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1223.74569955938	4	12	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTCTGACTTGCTGTTT	9743	False	NA	NA	False	NA	NA	NA	106890290	106879464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106888913_106889065_106890184
79085	chrX	+	4181	19	Antisense	novelGene_ENSMUSG00000036916.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	370	9	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGCTGCCAGAGCGCCC	NA	False	NA	NA	False	NA	NA	NA	47630522	47683458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_47632166_47632426_47632580_47636140_47636205_47637434_47637580_47638931_47639239_47642855_47642986_47647145_47647291_47647917_47648021_47648543_47648700_47652556_47652780_47655584_47655695_47655825_47655989_47657995_47658103_47661157_47661290_47661619_47661689_47667256_47667433_47677578_47677627_47680549_47680638_47683239
79086	chr2	-	2973	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-15	intron_retention	FALSE	non_canonical	2	766	junction_1	4111.94755407945	1	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCCTCCTGTGTAACTA	3759	False	NA	NA	False	NA	NA	NA	154734728	154713352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
79087	chr2	-	3396	13	NNC	ENSMUSG00000027206.14	novel	3392	13	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	311.49826109734	1596	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGTGTGTGCATGTGATA	NA	False	NA	NA	False	NA	NA	NA	125700916	125672221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681550_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
79089	chrX	-	3627	6	Antisense	novelGene_ENSMUSG00000031381.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGACCGAGAACGTTAGAAA	NA	False	NA	NA	False	NA	NA	NA	163216912	163202879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_163202963_163205575_163206358_163210925_163211059_163211533_163211667_163211804_163212012_163214623
79090	chrX	-	3368	24	Antisense	novelGene_ENSMUSG00000031060.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	104	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGGGAGCGCGCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	20517127	20484022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20484292_20486213_20486353_20501968_20502152_20503662_20503894_20505669_20505737_20507415_20507494_20508980_20509067_20510908_20510970_20511101_20511281_20511675_20511840_20512013_20512099_20512193_20512279_20513553_20513742_20513846_20513986_20514110_20514226_20514318_20514411_20514496_20514658_20515379_20515528_20515621_20515697_20515777_20515957_20516037_20516103_20516389_20516509_20516585_20516714_20516795
79091	chr16	+	5962	29	FSM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	-29	297	-29	-297	multi-exon	FALSE	canonical	3	145	junction_5	76.2263931339013	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTATGATTCTATTATTGG	NA	False	NA	NA	False	NA	NA	NA	29398122	29473405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
79092	chr17	-	5016	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	-64	-2218	-47	1158	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	376	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTCTTTCTGAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	85397716	85369739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
79093	chr7	+	3364	1	FSM	ENSMUSG00000065016.3	ENSMUST00000083082.3	132	1	-604	-2628	-604	2628	mono-exon	FALSE	NA	NA	NA	NA	NA	35	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACACCACCCAAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	109118722	109122086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109118700_109122100
79094	chr12	-	1781	5	FSM	ENSMUSG00000076432.14	ENSMUST00000103002.8	2110	5	326	3	20	0	multi-exon	FALSE	canonical	3	3292	junction_3	152.582764426393	28	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	21467111	21440332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798
79095	chr2	+	2304	4	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-296	33905	intron_retention	TRUE	non_canonical	0	0	junction_3	125.429927316676	199	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAACACCATGACTGTAA	NA	False	NA	NA	False	NA	NA	NA	176765816	176813045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176766152_176776035_176776163_176776368_176778154_176812988
79096	chr2	-	7781	47	FSM	ENSMUSG00000027272.6	ENSMUST00000028728.6	7768	47	-31	18	-31	-18	multi-exon	FALSE	canonical	3	63	junction_19	10.4276243563166	104	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGAAAAAAGGGAC	NA	False	NA	NA	False	NA	NA	NA	120801227	120690767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_120693273_120694798_120694901_120696870_120697042_120698706_120698785_120701469_120701527_120703604_120703714_120705846_120705981_120707439_120707540_120711511_120711663_120712701_120712770_120720256_120720354_120722552_120722609_120723548_120723698_120725552_120725647_120726976_120727075_120730981_120731132_120732082_120732177_120734474_120734681_120737324_120737507_120739902_120739990_120741582_120741693_120742478_120742579_120745347_120745503_120745848_120745898_120746904_120747008_120748301_120748355_120751858_120751984_120754612_120754677_120756435_120756538_120756774_120756841_120759866_120759978_120760201_120760264_120761326_120761508_120764784_120764914_120765696_120765797_120771447_120771606_120772957_120773057_120775131_120775221_120776314_120776423_120776754_120776879_120777102_120777166_120778238_120778378_120780520_120780652_120786090_120786202_120791565_120791645_120793844_120794102_120801002
79097	chr19	-	3261	3	NIC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	27	1	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	97	27	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCATCTTAGAAATTT	1951	False	NA	NA	False	NA	NA	NA	8796631	8786437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8789203_8795799_8796049_8796384
79098	chr9	-	1327	1	Antisense	novelGene_ENSMUSG00000062867.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTATGTGGACAGAGCA	9663	False	NA	NA	False	NA	NA	NA	108442732	108441405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108441400_108442700
79101	chr5	+	2763	15	Fusion	ENSMUSG00000015804.15_ENSMUSG00000039682.13	novel	2267	13	NA	NA	5	647	multi-exon	FALSE	canonical	3	45	junction_12	689.258030532152	67	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATACTCCATACCTCTT	NA	False	NA	NA	False	NA	NA	NA	45650720	45683626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45679777_45679845_45680763_45680877_45682494
79102	chr9	+	1828	15	Antisense	novelGene_ENSMUSG00000032254.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAGAGCCCGGCGGCGAC	NA	False	NA	NA	False	NA	NA	NA	61832027	61854019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_61832093_61832250_61832422_61832808_61832972_61833642_61833803_61834328_61834446_61834629_61834750_61834835_61834915_61836944_61837048_61842660_61842832_61843943_61844053_61844361_61844499_61844709_61844818_61851484_61851612_61852629_61852701_61853892
79103	chr3	+	3769	15	NNC	ENSMUSG00000007379.16	novel	3578	14	NA	NA	321	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	73.5400765375102	29	90	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAAAATTCCCACAGA	4328	False	NA	NA	False	NA	NA	NA	103047962	103077044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103048252_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
79104	chr15	-	4969	10	Intergenic	novelGene_3215	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	59	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCTTGCTTCTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	12169572	12146323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_12146481_12149611_12149806_12150258_12150550_12152885_12153088_12154535_12154649_12156346_12156493_12159682_12159848_12160570_12160774_12162196_12162349_12166226
79105	chrX	+	2273	10	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1184.97969977924	9	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100491196
79106	chr12	-	3233	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	64	2	64	-2	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	924	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATCCTGGATGCCTG	NA	False	NA	NA	False	NA	NA	NA	84819862	84801337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
79108	chr5	-	6000	8	ISM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	54	0	-2	0	intron_retention	FALSE	canonical	3	193	junction_5	40.1014020824658	8	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	NA	NA	NA	5609484	5587453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064
79109	chr6	-	1254	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	-73	457	0	255	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	3	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAACAGAACAGCTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	51446825	51440196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
79110	chr4	-	3316	18	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	1628	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	153.812697852815	1	135	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTACCTGACTTGTCTT	3178	False	NA	NA	False	NA	NA	NA	41121126	41114433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116599_41116720_41117394_41117493_41117659_41117806_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119873_41120006_41120185_41120273_41120390_41120537_41120680_41120992
79111	chr2	+	3602	10	Antisense	novelGene_ENSMUSG00000050043.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1986	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTCTCAGGCGACGGAA	NA	False	NA	NA	False	NA	NA	NA	84500040	84508625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_84500458_84500585_84500735_84500826_84502876_84503366_84503494_84503593_84503662_84503841_84503950_84505747_84505826_84506088_84506203_84506440_84506502_84508194
79112	chr5	+	2312	13	NIC	ENSMUSG00000042719.18	novel	5447	24	NA	NA	-22	-487	intron_retention	FALSE	canonical	3	302	junction_8	44.0822306100265	4	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAATGCTCAGTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	121536034	121564094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121562667_121564033
79113	chr10	-	4638	5	NIC	ENSMUSG00000025358.17	novel	2971	6	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	1013	junction_1	121.477364146577	5	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTGTAGAGTGAATCTC	8244	False	NA	NA	False	NA	NA	NA	128540903	128533815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128535080_128535340_128537314_128538281_128538453_128539575_128539697_128539794
79114	chr9	-	6957	1	ISM	ENSMUSG00000079259.3	ENSMUST00000111816.3	9332	4	50276	4	50276	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	366	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGGTGTCCGTGTGA	NA	False	NA	NA	False	NA	NA	NA	114343161	114336204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_114336200_114343200
79115	chr11	+	3387	7	FSM	ENSMUSG00000038366.16	ENSMUST00000043843.12	3540	7	152	1	45	-1	multi-exon	FALSE	canonical	3	479	junction_6	89.534754270184	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTAGGCTTCTTCCTCTTT	4608	False	NA	NA	False	NA	NA	NA	97690542	97729589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97690689_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
79117	chr2	-	4607	13	NNC	ENSMUSG00000026779.7	novel	5590	12	NA	NA	-15	-1019	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_11	52.4141493831156	285	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTCATTTTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	23045924	23006636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23038196_23038345_23040999_23041138_23045690
79118	chr11	-	2553	10	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	210.790458237442	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGAGCTGTGTTCCGTGC	7740	False	NA	NA	False	NA	NA	NA	113456611	113135682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196783_113260553_113260621_113354771_113354862_113414291_113414451_113450336_113450376_113452831_113452951_113456501
79120	chr7	+	5558	6	NNC	ENSMUSG00000046185.11	novel	4113	5	NA	NA	32	1598	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	33.6297487353087	259	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCCTCTCATGGTTTA	NA	False	NA	NA	False	NA	NA	NA	29468008	29480844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29468121_29470763_29470829_29474762_29474890_29475329_29475417_29475556_29478653_29478773
79121	chr11	-	3756	4	FSM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	26	364	26	-364	multi-exon	FALSE	canonical	3	429	junction_1	13.1993265821489	731	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTTTTTAAGATTATA	NA	False	NA	NA	False	NA	NA	NA	23615933	23596842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_23599591_23600929_23601056_23605435_23606131_23615746
79122	chr17	+	4719	22	NIC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	33	-13	combination_of_known_junctions	FALSE	canonical	3	48	junction_8	91.071126672391	2	95	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTACTGCTCATGTG	NA	False	NA	NA	False	NA	NA	NA	29879627	29922319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904882_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29920568_29921127
79123	chr19	-	4906	21	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	513.111040614018	2	88	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTAGTGTTTTGTCA	8761	False	NA	NA	False	NA	NA	NA	60779074	60749558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60750743_60751502_60751703_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761472_60761942_60762129_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
79124	chr2	+	4055	6	Antisense	novelGene_ENSMUSG00000077733.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGCGCGGGAGCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	10064716	10085252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_10068160_10068251_10068397_10068916_10069125_10073422_10073553_10074503_10074538_10085157
79125	chr7	-	2543	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	15	21	15	5	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	1	72	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCATACTTGTCATCTGC	NA	False	NA	NA	False	NA	NA	NA	33867985	33840133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
79126	chr16	-	8725	17	NNC	ENSMUSG00000022641.16	novel	8743	17	NA	NA	6	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5.13413819447821	103	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTTTAAAGATATTATTC	9721	False	NA	NA	False	NA	NA	NA	50252746	50012220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040960_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
79127	chrX	-	5139	24	NIC	ENSMUSG00000031310.17	novel	6057	25	NA	NA	6	-11	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	31.2483799201983	9	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAAATTGTTCTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	100463816	100448000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100449410_100449510_100449626_100452082_100452198_100452759_100452912_100453217_100453387_100453662_100453767_100454818_100454966_100455137_100455313_100455450_100455564_100455743_100455901_100455983_100456082_100456717_100456884_100457094_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100458505_100458793_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463764
79128	chr9	-	3127	25	FSM	ENSMUSG00000032580.13	ENSMUST00000182659.8	3205	25	-51	129	-51	0	multi-exon	FALSE	canonical	3	262	junction_19	112.690456068333	697	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9654	False	NA	NA	False	NA	NA	NA	107648246	107617698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
79129	chr13	-	2502	6	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113623.2_ENSMUSG00000113450.2	novel	2310	4	NA	NA	-6	-4	multi-exon	FALSE	canonical	2	10	junction_3	53.8144961882948	1	94	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCTTGTGTGTGGATCA	9532	False	NA	NA	False	NA	NA	NA	62614626	62516145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62555228_62555290_62555482_62555610_62614520
79130	chr13	+	2896	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-4	496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.245654319489	1	116	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAATAAGAAATGTCG	NA	False	NA	NA	False	NA	NA	NA	62277742	62321729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62294023_62294202_62317255_62317383_62317567_62317629_62318963_62320805_62321140
79131	chr13	+	3064	4	Fusion	ENSMUSG00000074867.5_ENSMUSG00000113566.2	novel	478	4	NA	NA	-67344	517	multi-exon	FALSE	canonical	3	7	junction_1	57.1333722286915	1	205	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62178217	62321750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_62178307_62254561_62254689_62317567_62317629_62318963
79132	chr4	-	4285	19	FSM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	39	-8	-19	3	multi-exon	FALSE	canonical	3	153	junction_3	22.816024799564	197	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTATACAGTCTATGTA	-6	True	NA	NA	False	NA	NA	NA	25281782	25248596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
79133	chr9	+	4537	34	NIC	ENSMUSG00000037286.16	novel	3857	26	NA	NA	-56	105	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	118.415720359599	1	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTTGTACAATTTA	NA	False	NA	NA	False	NA	NA	NA	100479794	100838992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_100480163_100545302_100545352_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100836273_100836389_100838421_100838503_100838587
79134	chr14	+	2606	7	NNC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	-14	-6	intron_retention	FALSE	canonical	0	0	junction_5	956.497604109214	63	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAATGAAGTCTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	14296777	14303771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14300065_14300336_14300433_14302918_14303061_14303291
79135	chr11	+	923	8	NNC	ENSMUSG00000020612.17	novel	3359	11	NA	NA	45	794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	715.369377971112	5	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATAAATAGAGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	109541791	109558596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_109541900_109544604_109544788_109550824_109550996_109551902_109551953_109552113_109552176_109553101_109553149_109553774_109553926_109558445
79136	chr4	+	3379	28	Intergenic	novelGene_1829	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	62	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTCGTTACCTGCCAAT	3990	False	NA	NA	False	NA	NA	NA	41195192	41275077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41195247_41195333_41195528_41195609_41195672_41195744_41195852_41195941_41196042_41196325_41196532_41196727_41196803_41199214_41199266_41199493_41199582_41199712_41199903_41201463_41201534_41202273_41202460_41203533_41203573_41205523_41205740_41206154_41206325_41206830_41207105_41209352_41209570_41211704_41211895_41216565_41216636_41218312_41218362_41221553_41221622_41223355_41223460_41227197_41227279_41229695_41229849_41233603_41233718_41235518_41235590_41251529_41251672_41275039
79137	chr4	-	3027	26	NIC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	13	-801	combination_of_known_junctions	FALSE	canonical	2	13	junction_24	253.814376267382	186	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCTTTCCAGCAGGCCA	1	True	NA	NA	False	NA	NA	NA	41275103	41195993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41245455_41245493_41251534_41251672_41275039
79138	chr4	-	2131	16	ISM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	53523	2031	-7784	-1154	internal_fragment	FALSE	canonical	3	748	junction_12	82.8415891258062	3	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGGCCTACTATGTTTG	NA	False	NA	NA	False	NA	NA	NA	41221612	41196346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555
79139	chr4	+	5605	29	ISM	ENSMUSG00000034610.15	ENSMUST00000043368.12	6054	31	19498	0	-157	0	3prime_fragment	FALSE	canonical	3	91	junction_24	21.0056782896474	321	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATTTGGTTAATTCAT	7962	False	NA	NA	False	NA	NA	NA	108336120	108416612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406437_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
79140	chr9	+	2412	11	NNC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	-32	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	577.479878437336	25	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	NA	False	NA	NA	False	NA	NA	NA	54493732	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508482_54510602
79141	chr17	-	2939	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	37	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	325	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	NA	False	NA	NA	NA	50600627	50586424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
79142	chr9	-	2874	20	NNC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	408.25575873824	632	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTGCCTGGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	64080177	64044428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64068839_64068965_64069841_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
79143	chr10	+	4437	26	NNC	ENSMUSG00000100548.2	novel	425	4	NA	NA	-10513	226	intron_retention	FALSE	non_canonical	0	0	junction_1	0	42	75	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCCCCAGTAATATATGG	9780	False	NA	NA	False	NA	NA	NA	128347618	128361752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128347655_128347736_128347839_128347928_128348088_128348195_128348336_128351556_128351644_128351735_128351806_128352013_128352112_128352226_128352320_128352403_128352453_128352546_128352631_128352825_128353006_128353122_128354883_128355009_128355085_128355298_128355388_128355462_128355555_128355657_128355707_128356141_128356223_128356510_128356689_128356774_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358983_128361330
79144	chr16	-	3663	18	NIC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	-66	-8	combination_of_known_junctions	FALSE	canonical	3	26	junction_15	37.195732165794	377	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAAAACTTCTGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	57051933	56989232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032854_57034526_57034633_57038671_57038784_57051676
79145	chr4	+	3047	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	-83	2259	-83	1400	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	667	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGATGTTTATTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	62326950	62342968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
79146	chr2	-	6585	25	Antisense	novelGene_ENSMUSG00000038685.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	101	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCACGCCTAAATGCTACA	NA	False	NA	NA	False	NA	NA	NA	180997824	180961541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180961650_180962598_180962857_180964108_180964302_180964591_180964685_180965152_180965236_180965474_180965536_180970393_180970475_180972588_180972669_180976702_180976770_180977684_180977835_180980844_180982387_180983315_180983371_180988621_180988698_180988803_180988885_180990965_180991368_180991459_180991995_180992425_180992504_180992817_180992963_180993037_180993147_180993361_180993744_180993830_180993971_180994542_180994641_180995768_180995967_180996143_180997604_180997714
79147	chr10	+	4006	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	-139	0	-139	0	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	767	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGATTTGACTGGTC	NA	False	NA	NA	False	NA	NA	NA	95350867	95381519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
79148	chr2	+	3750	18	NNC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	2	-2	intron_retention	FALSE	canonical	0	0	junction_11	146.470824474178	3	99	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTTGTTGTATGCTGTC	NA	False	NA	NA	False	NA	NA	NA	130266286	130285652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130266368_130279541_130279631_130279720_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283424_130283536_130283626_130283713_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
79149	chr4	+	6915	33	Fusion	ENSMUSG00000028330.9_ENSMUSG00000028328.14	novel	3010	23	NA	NA	14503	102	multi-exon	TRUE	non_canonical	0	0	junction_1	169.979732247701	837	18	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATTATTAATACTAATCC	54	False	NA	NA	False	NA	NA	NA	46114745	46172505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_46117084_46119142_46119285_46119842_46119999_46120446_46120566_46124041_46124149_46124899_46125026_46129226_46129348_46131842_46132156_46135385_46135595_46138379_46138688_46138748_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
79150	chr10	+	3349	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	25	-2024	-14	-7	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	11	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATACACTGGTGATATT	NA	False	NA	NA	False	NA	NA	NA	111309127	111334004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
79152	chrX	-	2896	13	FSM	ENSMUSG00000031297.15	ENSMUST00000113710.8	2750	13	-64	-82	-64	70	multi-exon	FALSE	canonical	3	29	junction_12	396.021464064765	468	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	100129690	100122745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877_100129064_100129193
79153	chrX	+	5052	23	NIC	ENSMUSG00000001173.16	novel	5253	24	NA	NA	2	-2	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	25.9866860380401	3	63	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCTCGGTCACTACGCA	NA	False	NA	NA	False	NA	NA	NA	47001333	47054638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
79154	chr11	+	3955	29	NNC	ENSMUSG00000020536.13	novel	4303	22	NA	NA	9925	13020	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	336	44	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGCAGGGAGGACGCGGG	NA	False	NA	-26	True	NA	NA	NA	60604947	60618032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60605277_60605417_60605479_60605854_60605965_60606111_60606219_60606288_60606420_60606495_60606550_60606625_60606782_60606915_60607155_60607226_60607373_60607482_60607672_60607964_60608157_60608234_60608337_60608942_60609121_60609672_60609746_60609849_60609940_60610524_60610699_60610831_60611042_60611182_60611324_60611463_60611614_60611905_60611986_60612269_60612429_60612501_60612682_60613118_60613227_60613411_60613575_60613826_60613916_60614193_60614271_60615615_60615692_60615986_60616093_60617947
79155	chr1	+	2004	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-34	7537	-2	-3	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	3185	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724133	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
79156	chr2	-	5859	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	2799	477333	intron_retention	TRUE	non_canonical	0	0	junction_1	2.1650635094611	4	163	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAACAGAAGTATCTGTG	5147	False	NA	NA	False	NA	NA	NA	177267193	176783663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176784322_176816221_176816872_177260471_177262087_177263143_177265632_177266745
79157	chrX	+	5294	15	FSM	ENSMUSG00000025037.7	ENSMUST00000026013.6	4167	15	-1129	2	-1129	-2	multi-exon	FALSE	canonical	3	197	junction_7	23.3440330181188	562	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATAGGCTTCTCTGATT	NA	False	NA	NA	False	NA	NA	NA	16484807	16554055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_16486153_16500420_16500516_16505302_16505441_16524806_16524912_16525683_16525776_16528555_16528698_16530889_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547111_16548439_16548538_16550202_16550315_16551220_16551284_16551470
79159	chr8	+	3859	13	NIC	ENSMUSG00000001909.17	novel	2567	17	NA	NA	-1	0	intron_retention	FALSE	canonical	3	179	junction_1	113.665780788337	17	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	NA	False	NA	NA	NA	85415910	85426415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85416006_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
79160	chr10	+	3178	11	Antisense	novelGene_ENSMUSG00000055531.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	440	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGTGGGGGCGGGGCGCC	NA	False	NA	NA	False	NA	NA	NA	117183996	117212875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_117185375_117191688_117191760_117191841_117192030_117194897_117195055_117196347_117196460_117196759_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203893_117212742
79161	chr16	-	2976	11	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	359.259015196557	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACCATTGGCTCCTCATT	6273	False	NA	NA	False	NA	NA	NA	38370577	38345502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355024_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
79162	chr17	+	2233	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	-208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	732.756136484407	10	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTGGACTGTAATAAACA	NA	False	NA	NA	False	NA	NA	NA	29251646	29262139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357_29260759_29260890
79164	chr1	-	3308	8	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	72	276	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	145.804593863968	17	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCGTAATTGGATGGCT	NA	False	NA	NA	False	NA	NA	NA	13197315	13183404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13196793
79165	chr10	+	1969	1	NIC	ENSMUSG00000063334.17	novel	5023	10	NA	NA	11334	-799	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATTAAAGTATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	111820031	111822000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111820000_111822000
79166	chr9	-	3523	11	FSM	ENSMUSG00000032423.13	ENSMUST00000174391.8	6257	11	28	2706	-24	0	multi-exon	FALSE	canonical	3	68	junction_10	258.93213396564	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGTTACTGGTATAGCT	NA	False	NA	NA	False	NA	NA	NA	88364273	88334489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88364108
79167	chr16	-	2387	5	NNC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	854.7122322747	12	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	17019381	16969878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16971192_16971438_16972147_16977853_16978041_16994275_16994372_17019298
79168	chr12	+	3196	8	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	-3	-144	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	183.445148338624	3	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGACTGTTTAAAATTAGTA	NA	False	NA	NA	False	NA	NA	NA	59113704	59120640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114609_59115524_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
79170	chr17	+	2228	2	ISM	ENSMUSG00000059791.15	ENSMUST00000172931.2	302	3	1465	-797	1465	-2	3prime_fragment	FALSE	canonical	3	267	junction_1	0	5	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCACTTGTCTGTCCATG	6222	False	NA	NA	False	NA	NA	NA	36173842	36176292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_36175181_36175402
79171	chr1	-	3368	10	NIC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	-24	0	intron_retention	FALSE	canonical	3	484	junction_1	32.9256551253289	805	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAGTAAATATAGCCG	NA	False	NA	NA	False	NA	NA	NA	36749052	36737194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
79172	chr1	-	10099	18	FSM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	31	1000	-20	-1000	multi-exon	FALSE	canonical	3	128	junction_7	50.2666247525517	288	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTAGTAGTAGATGATC	NA	False	NA	NA	False	NA	NA	NA	189420252	189373802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_189375000_189378998_189379178_189380807_189381285_189382758_189382919_189383344_189383498_189384457_189387290_189388841_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
79173	chr13	-	4638	14	NNC	ENSMUSG00000021665.10	novel	727	6	NA	NA	27	3824	intron_retention	FALSE	canonical	1	2	junction_1	645.081316831796	11	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAACACATGGAAATGCG	NA	False	NA	NA	False	NA	NA	NA	97334838	97309014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97312034_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
79174	chr2	+	2682	3	ISM	ENSMUSG00000027502.12	ENSMUST00000140048.2	1922	5	12080	2	12080	-2	3prime_fragment	FALSE	canonical	3	417	junction_1	16.5	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGGGGGGTTGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	172306976	172311826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_172308252_172308348_172308445_172310515
79175	chr11	-	3126	5	NNC	ENSMUSG00000038615.18	novel	3547	4	NA	NA	10	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	600.382534306254	2	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTTTGTTGTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	96714824	96708573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96709158_96709229_96711343_96712076_96712236_96712929_96713146_96714770
79176	chr5	+	1004	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	254	1165	254	-1165	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	5	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTAAACAAGTGAATCAT	799	False	NA	NA	False	NA	NA	NA	129097589	129100222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
79177	chr6	-	2306	10	NNC	ENSMUSG00000025823.10	novel	2399	10	NA	NA	-26	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	616.10865644236	79	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCATGTTGTTTGCCTT	8930	False	NA	NA	False	NA	NA	NA	47790324	47773081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_47773838_47775344_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
79178	chr6	+	2473	10	NNC	ENSMUSG00000015733.14	novel	2537	10	NA	NA	13	94	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	579.349635367107	4	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAACTTTTTAAATTG	16	True	NA	NA	False	NA	NA	NA	17637053	17667065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656322_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
79179	chr18	+	4545	15	NIC	ENSMUSG00000024614.8	novel	4611	16	NA	NA	3	-16	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	55.6583968764565	411	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATCATTGCATAATTGC	4746	False	NA	NA	False	NA	NA	NA	90528281	90561375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
79181	chr5	+	3091	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	52	1	-1	-1	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATTGGCTAAGATTCAT	NA	False	NA	NA	False	NA	NA	NA	31652136	31670247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
79182	chr19	-	4279	34	NNC	ENSMUSG00000035049.5	novel	4340	34	NA	NA	-17	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_33	73.8524451506456	13	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGAGTGGCTTGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	41884629	41851285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883785_41884427
79183	chr11	+	3394	13	Antisense	novelGene_ENSMUSG00000020717.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGTTTCTCCTCTTCC	NA	False	NA	NA	False	NA	NA	NA	106544801	106615240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106545991_106570376_106570440_106571859_106571910_106573703_106573788_106575045_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588180_106590416_106590713_106605828_106605989_106615195
79184	chr5	-	2751	19	NNC	ENSMUSG00000025745.13	novel	4017	20	NA	NA	-21	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.538053761205	137	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGGCCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	30360181	30324427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30324974_30325715_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
79186	chr7	+	4944	7	FSM	ENSMUSG00000109244.2_ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	0	-2451	0	2451	multi-exon	FALSE	canonical	3	323	junction_5	18.6100331362771	855	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAAACTTTCTACTTTGC	NA	False	NA	NA	False	NA	NA	NA	87927292	87962547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_87927583_87930594_87930741_87946290_87946458_87948652_87948806_87951392_87951509_87957220_87957353_87958607
79187	chr7	-	2977	18	NNC	ENSMUSG00000031078.16	novel	3286	18	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	340.004935848561	704	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	144024472	143989471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011440_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
79188	chr5	+	4227	2	FSM	ENSMUSG00000064841.3_ENSMUSG00000029614.14	ENSMUST00000138621.2	565	2	-3662	0	-12	0	multi-exon	FALSE	canonical	3	16758	junction_1	0	29	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121342596	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121346639_121346844
79189	chr10	-	2183	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-8	-189	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	600.008154214563	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAACCTGCCCAGGGTTC	NA	False	NA	NA	False	NA	NA	NA	127358321	127353196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356711_127356985_127358156
79191	chr17	-	3611	9	NIC	ENSMUSG00000025728.17	novel	3173	11	NA	NA	-36	-1	intron_retention	FALSE	canonical	3	243	junction_5	21.9199538092579	649	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACCAGCTTGGGTGTCC	NA	False	NA	NA	False	NA	NA	NA	26160945	26145402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
79192	chr11	+	4204	26	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	48	-584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	681.460901299554	1	135	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTCACTGACTTAA	NA	False	NA	NA	False	NA	NA	NA	23206125	23247013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206644_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235057_23235220_23235800_23235928_23236766_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
79193	chr6	-	3675	2	Genic_Genomic	ENSMUSG00000029752.13	novel	2016	12	NA	NA	1490	-1726	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	113	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTAGGGTGCTCCCACC	4089	False	NA	NA	False	NA	NA	NA	7690732	7686999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_7687878_7687935
79195	chr8	+	4434	11	FSM	ENSMUSG00000008206.17	ENSMUST00000008350.16	9475	11	120	4921	120	1637	multi-exon	FALSE	canonical	3	44	junction_6	6.51459898996093	321	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAATAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	4543318	4576759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4569514_4570215_4570309_4570553_4570683_4571173_4571281_4573353_4573511_4573603
79197	chr9	-	3363	16	NNC	ENSMUSG00000032127.10	novel	3536	16	NA	NA	-2	30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	59.6119302004408	354	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACGTCCTGAGTTCTAGTT	6402	False	NA	NA	False	NA	NA	NA	44272943	44259194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271281_44272737
79198	chr11	-	1842	10	FSM	ENSMUSG00000059796.17	ENSMUST00000128519.8	1845	10	2	1	0	0	multi-exon	FALSE	canonical	3	9657	junction_9	1461.90417007037	31	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563141	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
79199	chr11	-	1661	9	ISM	ENSMUSG00000059796.17	ENSMUST00000128519.8	1845	10	1127	359	32	-73	3prime_fragment	FALSE	canonical	3	13069	junction_4	692.626240749656	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACCGTGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	69562016	69558120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753
79200	chr13	+	2762	5	NNC	ENSMUSG00000021486.8	novel	1204	4	NA	NA	2324	5876	intron_retention	FALSE	non_canonical	0	0	junction_1	0	298	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATAGGTAACAGCCTGG	388	False	NA	NA	False	NA	NA	NA	55472155	55478961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55473712_55473825_55474012_55476184_55476301_55477060_55477189_55478185
79201	chr11	+	5407	26	FSM	ENSMUSG00000034543.16	ENSMUST00000096441.5	5656	26	247	2	-56	-2	multi-exon	FALSE	canonical	2	298	junction_20	51.0520361983731	239	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCCTGCGTTCAGTACAT	NA	False	NA	NA	False	NA	NA	NA	3599437	3640475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
79202	chrX	-	1938	1	Intergenic	novelGene_3987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAATTTGGAAAATTAAAAT	NA	False	NA	NA	False	NA	NA	NA	99180907	99178969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_99179000_99180900
79203	chr1	+	2574	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-23	-4	-23	0	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	412	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTTTTGTCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	4928013	4968132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
79204	chr13	+	2944	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	88	-5	88	5	multi-exon	FALSE	canonical	3	487	junction_1	56.3576747213722	1130	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTAAAATACTTGTAGTTT	NA	False	NA	NA	False	NA	NA	NA	8935624	8942492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
79205	chr6	+	2310	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	74	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2053.24139404558	3	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684600	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688323_122688763_122689587_122689675_122690100
79206	chr1	+	2320	8	NIC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	659.604365030544	22	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTTTTGTCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	4928033	4968132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_4928200_4937692_4937756_4948249_4948356_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
79207	chrX	-	3296	3	NNC	ENSMUSG00000031387.15	novel	514	4	NA	NA	-2	715	intron_retention	FALSE	non_canonical	0	0	junction_1	1051	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGATTATTTTTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	72974400	72968153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72970297_72972907_72972947_72973286
79208	chr11	-	1668	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	-3	-508	-3	508	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	2	78	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGTTTGGAAGGAACTGG	NA	False	NA	NA	False	NA	NA	NA	33113080	33104418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
79209	chr13	-	3049	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	53	-375	-26	375	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	919	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATATTTAAGCCAAATTTG	NA	False	NA	NA	False	NA	NA	NA	54713195	54698655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
79210	chr4	+	1269	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	295	612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	201.206666015268	6	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGGACTTAGAGAACTT	5343	False	NA	NA	False	NA	NA	NA	89055653	89098323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089420_89090571_89090622_89095039_89095163_89097704
79211	chr7	-	4806	14	NIC	ENSMUSG00000025474.10	novel	3341	17	NA	NA	-23	3	intron_retention	FALSE	canonical	3	352	junction_8	28.725800208752	5	113	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTTCTGTCTTGGCT	NA	False	NA	NA	False	NA	NA	NA	139613713	139575877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_139576080_139576694_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525
79212	chr4	-	7603	16	NIC	ENSMUSG00000038047.19	novel	6158	17	NA	NA	3	0	intron_retention	TRUE	canonical	3	135	junction_13	20.3091659656969	10	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGAATTCCCTGTATT	NA	False	NA	NA	False	NA	NA	NA	86530283	86497091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_86500256_86501117_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
79213	chr11	+	4024	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	-12	-1	-12	1	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	411	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTATCTTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	106107739	106139966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
79214	chr17	-	3541	28	Intergenic	novelGene_250	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCGGGACATGCTGTTCC	3002	False	NA	NA	False	NA	NA	NA	46553210	46517440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_46517486_46518704_46518842_46518999_46519199_46525498_46525689_46526657_46526733_46528501_46528605_46529464_46529553_46530314_46530441_46531684_46531778_46532278_46532408_46533586_46533718_46535941_46536096_46537336_46537382_46537846_46537932_46538652_46538853_46540234_46540338_46541124_46541305_46544641_46544742_46545375_46545473_46546788_46546928_46547838_46547936_46549297_46549345_46549814_46549914_46550439_46550501_46551081_46551165_46551738_46551846_46552339_46552816_46553058
79215	chr2	+	5209	17	NIC	ENSMUSG00000040506.17	novel	5203	18	NA	NA	-4	-1	intron_retention	TRUE	canonical	3	16	junction_7	27.2367370246511	131	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGGCTCCTGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	91560474	91749192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91604093_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
79216	chr3	+	3952	3	ISM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	6269	813	6245	-631	3prime_fragment	FALSE	canonical	3	260	junction_1	112	1	202	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATCATTACCGGTTGTC	NA	False	NA	NA	False	NA	NA	NA	16243644	16270388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_16243728_16257989_16259589_16268118
79217	chr2	+	7114	18	NNC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	2	-1	intron_retention	FALSE	non_canonical	0	0	junction_8	357.154750172715	13	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAGACTCCTTTGATT	7221	False	NA	NA	False	NA	NA	NA	29779824	29821756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802647_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29816115_29816715_29816842_29820481
79218	chr11	-	4447	15	NIC	ENSMUSG00000020451.18	novel	3514	16	NA	NA	-19	0	intron_retention	FALSE	canonical	3	97	junction_13	51.641227004503	8	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	NA	False	NA	NA	False	NA	NA	NA	3359208	3294255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
79219	chr3	-	4077	2	NIC	ENSMUSG00000038975.15	novel	1418	8	NA	NA	-90	0	intron_retention	FALSE	canonical	3	910	junction_1	0	12	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6708	False	NA	NA	False	NA	NA	NA	153618038	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153616526_153617561
79222	chr7	+	2918	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	-33	-182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	176.4291642558	5	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGTTGGGGGCACTCTT	NA	False	NA	NA	False	NA	NA	NA	42826978	42841351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42839309_42839353
79223	chr4	-	1673	7	ISM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	43781	10	-5456	-10	3prime_fragment	FALSE	canonical	3	1473	junction_1	86.9241367834939	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGGCCAGAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	137479914	137469053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862
79224	chr2	-	770	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	-32	12	-32	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAAAAATGAGTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	75022198	75021428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75021400_75022200
79225	SIRV7	-	2445	5	FSM	SIRV7A	SIRV703	2498	5	0	53	0	-48	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAGCCAAAATAGATGAAAT	NA	False	NA	NA	False	NA	NA	NA	147918	1053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
79226	chr10	+	5529	13	NIC	ENSMUSG00000037608.17	novel	3231	13	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_6	354.997994908265	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATAGCTGGTCTCTGTTTG	2793	False	NA	NA	False	NA	NA	NA	20188217	20218244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20202909_20203138_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
79227	chr1	-	4089	8	NNC	ENSMUSG00000026200.14	novel	2339	17	NA	NA	-279	5978	intron_retention	FALSE	non_canonical	0	0	junction_1	0	17	87	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTAATGTCCCGAGAGC	4347	False	NA	NA	False	NA	NA	NA	75176031	75168901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75169264_75171481_75171587_75171706_75173025_75173156_75174769_75174908_75175026_75175123_75175287_75175421_75175509_75175706
79228	chr14	-	6985	30	ISM	ENSMUSG00000021782.15	ENSMUST00000090398.11	7851	32	52987	2	-15144	-2	3prime_fragment	TRUE	canonical	3	63	junction_27	24.6141689423582	255	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATCCCTGTGTGTAGACC	2918	False	NA	NA	False	NA	NA	NA	24243001	24184024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369_24194564_24196219_24196391_24197140_24197290_24198275_24198460_24199430_24199581_24200206_24200341_24200579_24200743_24204298_24204450_24204667_24204758_24205208_24205322_24206539_24206685_24207013_24207138_24207802_24208823_24210312_24210406_24214098_24214203_24214465_24214642_24215312_24215441_24216228_24216362_24220497_24220624_24222087_24222273_24226463_24226777_24227795_24228056_24240385_24240570_24241215_24241360_24242859
79229	chr4	-	2612	14	NNC	ENSMUSG00000028656.15	novel	2737	13	NA	NA	9	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	395.823940301716	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779644	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758958_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122776497_122776574_122779625
79230	chr7	+	3656	2	ISM	ENSMUSG00000056394.21	ENSMUST00000165964.10	3166	28	19812	7570	-3735	-2156	intron_retention	FALSE	canonical	3	1280	junction_1	0	4	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACCTCAACGGAGAGGTG	2042	False	NA	NA	False	NA	NA	NA	13033002	13037780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_13033066_13034187
79231	chr6	-	1262	1	NIC	ENSMUSG00000030357.11	novel	2678	9	NA	NA	6289	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	5380	False	NA	NA	False	NA	NA	NA	128408327	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_128407100_128408300
79232	chr9	+	4124	7	Intergenic	novelGene_1067	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCTGAGCCAGAAAACTG	NA	False	NA	NA	False	NA	NA	NA	58125374	58157010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127857_58136640_58136694_58137108_58137369_58140434_58140531_58141635_58142217_58154257_58154725_58156825
79233	chr1	-	5061	21	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	25	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAACTAGAAACACTCCAG	3250	False	NA	NA	False	NA	NA	NA	87647412	87603966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87604088_87609206_87609290_87609406_87609479_87611462_87611588_87619346_87619454_87623055_87623157_87625069_87625266_87625831_87625952_87626748_87626845_87627359_87627500_87628880_87628990_87629135_87629225_87630838_87630921_87633654_87633746_87635810_87635931_87637337_87637421_87638784_87638874_87639751_87639902_87640913_87643034_87645409_87646005_87647040
79234	chr7	+	2899	4	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	-12	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	400.600660120386	2	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCATGCTTTCTTTCTCT	259	False	NA	NA	False	NA	NA	NA	3339087	3347871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3339318_3341727_3341816_3345237_3346989_3347041
79235	chr14	+	3044	6	NNC	ENSMUSG00000056234.16	novel	4065	10	NA	NA	5	114	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	246.023088347415	7	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGATTTGGCCATGTGT	NA	False	NA	NA	False	NA	NA	NA	31881872	31901318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31881968_31892704_31892860_31894259_31894377_31897915_31898913_31899189_31899331_31899779
79236	chr10	+	5954	23	NNC	ENSMUSG00000020255.9	novel	123179	4	NA	NA	127251	45576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	124	30	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGCTTCGCTTCAGCTC	NA	False	NA	NA	False	NA	NA	NA	83323335	83369945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_83326497_83328336_83328541_83329293_83329401_83331734_83331901_83333336_83333434_83335701_83335803_83337754_83337854_83338307_83338397_83339806_83339912_83339989_83340060_83342460_83342615_83343880_83344011_83344478_83344595_83348151_83348301_83349445_83349537_83350316_83350445_83351911_83352047_83354207_83354302_83354501_83354597_83356131_83356302_83358568_83358801_83363168_83363316_83369831
79237	chr4	-	3445	16	NNC	ENSMUSG00000037188.8	novel	2789	16	NA	NA	-34	625	at_least_one_novel_splicesite	FALSE	canonical	3	83	junction_11	58.2178285025778	948	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGGCCTCCGTGTCC	NA	False	NA	NA	False	NA	NA	NA	135300975	135268573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279191_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
79238	chr9	-	3772	12	NNC	ENSMUSG00000032423.13	novel	9450	12	NA	NA	13	-16	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	268.149982702107	656	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAGTATGTTGTATGTC	NA	False	NA	NA	False	NA	NA	NA	88364236	88334505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88336349_88338273_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
79239	chr19	-	3318	11	FSM	ENSMUSG00000024826.16	ENSMUST00000136983.8	3314	11	-26	22	-26	-22	multi-exon	FALSE	canonical	3	642	junction_2	68.1739686390634	1910	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTAAAGATTTATTTAT	1246	False	NA	NA	False	NA	NA	NA	5962925	5946565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
79241	chr13	-	1591	3	Intergenic	novelGene_1451	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACTTGCAGAAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	66784214	66773939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66774066_66782548_66782675_66782875
79243	chr8	+	4602	14	FSM	ENSMUSG00000039842.16	ENSMUST00000039412.15	4662	14	59	1	26	-1	multi-exon	FALSE	canonical	3	150	junction_4	12.6528524276628	207	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAGCAATAATTTTAAT	NA	False	NA	NA	False	NA	NA	NA	18645205	18853204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
79244	chr1	-	2506	11	NIC	ENSMUSG00000026341.17	novel	2565	12	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	4	junction_10	755.642250009884	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGATGGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	125363284	125320645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125363021
79245	chr17	+	986	1	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGCCTTCGCGCCTCATC	490	False	NA	NA	False	NA	NA	NA	32538850	32539836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32538800_32539800
79246	chr4	+	5541	20	Genic_Genomic	ENSMUSG00000070717.2	novel	2296	1	NA	NA	-151273	-1705	multi-exon	TRUE	non_canonical	0	0	junction_1	0	171	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGGGGGCCTCCACCTGC	NA	False	NA	NA	False	NA	NA	NA	131650734	131802598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_131653249_131653819_131653922_131655804_131655886_131657006_131657107_131663049_131663181_131664327_131664776_131684953_131685130_131690233_131690300_131695100_131695289_131701996_131702168_131702848_131702947_131706120_131706273_131709762_131709850_131717023_131717245_131718521_131718596_131724807_131724855_131727512_131727618_131730897_131731106_131734268_131734735_131802492
79247	chr4	-	3310	8	FSM	ENSMUSG00000040550.18	ENSMUST00000151012.3	2647	8	-121	-542	71	3	multi-exon	FALSE	canonical	1	2	junction_5	152.637492385169	831	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTATATTCAAATTGTC	85	False	NA	NA	False	NA	NA	NA	14826516	14809503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14819094_14819216_14822691_14822773_14825498_14825654_14826290
79248	chr11	+	2481	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3942	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	10	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGACTGCTAAAACTCAC	NA	False	NA	NA	False	NA	NA	NA	55360559	55391722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55391299_55391529
79249	chrX	-	3786	2	FSM	ENSMUSG00000031320.10	ENSMUST00000152739.2	784	2	11	-3013	11	327	multi-exon	FALSE	canonical	3	11043	junction_1	0	5	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCCATGTAGAGTGAATA	NA	False	NA	NA	False	NA	NA	NA	101232931	101228219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101231978_101232903
79250	chrX	+	2436	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-31	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1638.03884957814	1	76	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473309	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487102_100487882_100487968_100488297_100488424_100488900_100488941_100489724_100489835_100491199
79251	chr2	+	4079	3	NIC	ENSMUSG00000095315.3	novel	2159	4	NA	NA	45	2026	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	56.5	246	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGGAGGTGTCCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	150153395	150170958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_150153479_150165621_150165749_150167089
79252	chr2	-	2886	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	-62	4	-62	-4	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	735	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTCTCTGGGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	51039185	51020453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
79253	chr5	-	2344	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	14	260	-2	multi-exon	FALSE	canonical	3	916	junction_1	0	3	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAAAATCTTCATTTGTG	NA	False	NA	NA	False	NA	NA	NA	125466818	125463042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
79254	chr5	-	2350	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	8	260	4	multi-exon	FALSE	canonical	3	916	junction_1	0	65	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTCATTTGTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	125466818	125463036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
79255	chr13	-	5734	15	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	22.1833730712064	11	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGGTTTGTTGTATTC	NA	False	NA	NA	False	NA	NA	NA	64396457	64340360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_64344490_64344793_64344860_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
79256	chr1	-	5711	20	Antisense	novelGene_ENSMUSG00000033257.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAGCGCGCCCCCAGCG	9407	False	NA	NA	False	NA	NA	NA	74740039	74700907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_74701047_74712000_74712170_74719512_74719622_74720457_74720567_74720915_74720980_74724475_74724601_74725016_74725130_74725475_74725551_74726360_74726555_74726636_74726718_74726879_74727011_74727322_74727449_74727726_74727825_74728481_74728614_74729115_74729268_74734868_74734968_74735561_74735773_74735898_74735971_74736336_74736408_74736598
79257	chr1	-	809	4	NNC	ENSMUSG00000060743.13	novel	2841	4	NA	NA	31	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1205.85276418346	2	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACGGCAACTAAATGGTG	NA	False	NA	NA	False	NA	NA	NA	180641068	180630295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180630771_180637681_180637824_180639350_180639510_180641035
79258	chr17	+	3503	17	ISM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	18	14	18	-14	intron_retention	FALSE	canonical	3	1341	junction_7	118.534739106306	1	156	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTTTACCCAGCGCGTG	NA	False	NA	NA	False	NA	NA	NA	71923227	71966012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335
79259	chr2	+	3323	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	-72	-785	-20	773	multi-exon	FALSE	canonical	3	270	junction_1	83.3153580613376	105	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAATTGTCAAATACATT	NA	False	NA	NA	False	NA	NA	NA	71042029	71094420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
79260	chr11	+	1940	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	71	473	-36	156	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATTAAATACTTGGTT	NA	False	NA	NA	False	NA	NA	NA	22940589	22953307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
79261	chr4	-	4007	20	NIC	ENSMUSG00000040359.15	novel	4316	19	NA	NA	0	142	combination_of_known_junctions	TRUE	canonical	3	78	junction_1	36.6180404503927	115	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCCAGATTTCAGCAAAT	-6	True	NA	NA	False	NA	NA	NA	25281821	25248457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_25249970_25250425_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
79262	chr1	+	2710	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	-9	-210	-9	3	multi-exon	FALSE	canonical	3	72	junction_1	87	249	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTTTGTCTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	155911462	155929485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_155911667_155916820_155916881_155927039
79264	chr16	+	3365	8	FSM	ENSMUSG00000022871.14	ENSMUST00000170805.9	1520	8	-636	-1209	-588	1209	multi-exon	TRUE	canonical	0	0	junction_2	163.600059877241	2095	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCTCCATGTTTGATAAC	NA	False	NA	NA	False	NA	NA	NA	22736495	22759737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
79265	chr10	-	2240	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-6	-196	intron_retention	FALSE	canonical	3	1501	junction_10	178.06526893249	1926	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATGCTAACCTGCCC	NA	False	NA	NA	False	NA	NA	NA	127358239	127353203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
79266	chr11	+	3161	29	NNC	ENSMUSG00000020464.16	novel	2707	28	NA	NA	0	340	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	192.357802635333	797	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTAGAAATAACTGATAAC	NA	False	NA	NA	False	NA	NA	NA	29080743	29112168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29080919_29081253_29081364_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
79267	chr7	-	4862	35	NNC	ENSMUSG00000037020.17	novel	4742	33	NA	NA	-3	-151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	59.7660736874511	3	119	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGCCCTGCTGGAAC	NA	False	NA	NA	False	NA	NA	NA	29979824	29939718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29940140_29940655_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943897_29943966_29944114_29944312_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29970680_29970787_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
79268	chr19	-	5220	9	FSM	ENSMUSG00000033417.17	ENSMUST00000081790.15	5792	9	545	27	475	-27	multi-exon	FALSE	canonical	2	169	junction_2	23.687747360186	239	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTTTTAAGTTTTGTG	6891	False	NA	NA	False	NA	NA	NA	60568918	60513160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_60517526_60517902_60517947_60522573_60522713_60525851_60525942_60531447_60531551_60533883_60533980_60551599_60551703_60552605_60552733_60568765
79269	chr1	-	2490	5	NIC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	-1	-569	intron_retention	FALSE	canonical	3	4235	junction_4	202.107026102508	5	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTTTACTTAAAAGATGA	7365	False	NA	NA	False	NA	NA	NA	160040376	160030505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_160031294_160032537_160033766_160034182_160034280_160035948_160036166_160040216
79270	chr11	+	1376	4	ISM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	8540	39	2712	-36	3prime_fragment	FALSE	canonical	3	695	junction_1	147.368774017957	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGTAGATGTCCACGTAATA	NA	False	NA	NA	False	NA	NA	NA	80282668	80287035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_80282819_80285111_80285358_80285927_80286088_80286215
79271	chr4	-	3288	6	NNC	ENSMUSG00000057236.11	novel	722	4	NA	NA	21	15226	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	536.035446589122	1287	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTAAAAGCAAACAAAACCA	2513	False	NA	NA	False	NA	NA	NA	129229142	129185666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129185684_129200898_129203676_129216594_129216663_129222380_129222527_129228289_129228438_129229010
79272	chrX	+	4122	10	Antisense	novelGene_ENSMUSG00000031386.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	404	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGCCCAACTCTGACACT	NA	False	NA	NA	False	NA	NA	NA	72986403	72993504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72988083_72988250_72988316_72988738_72989040_72989729_72989915_72990314_72990454_72990540_72990656_72990795_72991124_72991447_72991893_72992507_72992674_72992805
79276	chr8	+	3117	19	FSM	ENSMUSG00000004626.15	ENSMUST00000160708.8	2908	19	149	-358	-48	358	multi-exon	FALSE	canonical	3	307	junction_10	31.5352536413174	590	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGGCTTTACAGGAATTTA	4536	False	NA	NA	False	NA	NA	NA	3681103	3694002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
79277	chr7	+	4591	4	NIC	ENSMUSG00000045411.17	novel	2131	7	NA	NA	-2	0	intron_retention	FALSE	canonical	3	709	junction_2	50.8745734352852	21	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	NA	False	NA	NA	NA	43896208	43901741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43899024_43899444_43899484_43899732_43899765_43900036
79278	SIRV7	-	2339	6	NNC	SIRV7A	novel	2462	5	NA	NA	2	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1670.53363929015	2	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTATTCTTCCAAGCGTAA	NA	False	NA	NA	False	NA	NA	NA	147921	1021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_1147_1249_2676_2993_3112_43028_43078_114680_114989_147608
79279	chr1	-	4125	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	15	493	15	-493	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	639	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATAAGTCTCTGGTTAA	39	False	NA	NA	False	NA	NA	NA	106724443	106697652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
79280	chr4	-	2595	10	ISM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	12775	8	1916	-1	3prime_fragment	FALSE	canonical	3	283	junction_5	286.973479223739	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAACATTGCCACTCACA	5715	False	NA	NA	False	NA	NA	NA	135067857	135047802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813
79281	chr18	-	4020	8	NNC	ENSMUSG00000040446.5	novel	4299	7	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	90.8764579648926	9	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	24663273	24618016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24620902_24621192_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
79282	chr19	-	5114	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	-55	0	-55	0	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	779	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGCTTTGTGTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	37340065	37246141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
79283	chr3	+	4513	16	ISM	ENSMUSG00000028034.16	ENSMUST00000200524.5	2552	20	-11	6580	-2	1326	intron_retention	FALSE	canonical	1	416	junction_13	308.851175955166	110	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACGAACGGACAAGGTAA	NA	False	NA	NA	False	NA	NA	NA	151916107	151931829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922
79284	chr5	-	6752	10	Intergenic	novelGene_679	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	72	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCGCACCCAGTGCGCAAG	NA	False	NA	NA	False	NA	NA	NA	30477403	30437606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_30437812_30452458_30452528_30453407_30453516_30457704_30457779_30461072_30461338_30462708_30462818_30468067_30468111_30469265_30469454_30470335_30470521_30471897
79285	chr9	+	1027	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2028.1482249141	1052	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957693_119958229_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
79286	chr12	+	1928	6	NNC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	-670	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	89.0325783070444	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGGCTCTTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	84377879	84390498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84378593_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
79287	chr7	+	2463	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	253	6	41	2	multi-exon	FALSE	canonical	3	986	junction_1	0	7	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACTTGCTGTGAGTAT	328	False	NA	NA	False	NA	NA	NA	44465764	44480230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
79288	chr16	-	2832	11	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	-34	77	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_10	287.761081454737	1348	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGTACTTGGTGAGCCT	6196	False	NA	NA	False	NA	NA	NA	38370654	38345421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369759_38370444
79289	chr12	+	2423	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	-94	170	-94	51	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	1640	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACTGATGTGTCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	21336264	21364887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
79290	chr2	-	5373	21	NNC	ENSMUSG00000017670.17	novel	3466	21	NA	NA	38	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	76.2680142654835	8	95	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACTGCTTCCTATCCACA	NA	False	NA	NA	False	NA	NA	NA	165168361	165131076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165132482_165134024_165134583_165134693_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
79291	chr10	+	5827	24	NNC	ENSMUSG00000019907.11	novel	3403	26	NA	NA	-76	-233	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	70.6435446235212	200	18	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTAAAAACTAAACTTCTG	NA	False	NA	NA	False	NA	NA	NA	107997977	108115612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696_108096898_108097105_108097278_108098172_108098293_108100563_108100630_108104417_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
79292	chr5	-	4107	27	NNC	ENSMUSG00000062234.15	novel	4453	28	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	76.0226142001345	1	105	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCAGTCTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	108777616	108717288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108730837_108733228_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
79293	chr10	-	4781	30	Intergenic	novelGene_3419	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	164	11	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAGGGACGGGGGCGGAG	NA	False	NA	NA	False	NA	NA	NA	28472050	27950816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_27951172_28082127_28082251_28139494_28139767_28210469_28210552_28212415_28212532_28230598_28230774_28259424_28259716_28341748_28342056_28348942_28349052_28351078_28351278_28359178_28359288_28368907_28369182_28372902_28372940_28427611_28427751_28435998_28436162_28442490_28442674_28444320_28444411_28445892_28445970_28449363_28449399_28450812_28450912_28451582_28451701_28456386_28456538_28461550_28461697_28461922_28462067_28462901_28463076_28464921_28465051_28465250_28465380_28467878_28468045_28468765_28468901_28471796
79294	chr4	+	4411	17	ISM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	26079	464	558	-463	3prime_fragment	FALSE	canonical	3	555	junction_8	305.832668454091	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCCAGGCTTCTTTATG	NA	False	NA	NA	False	NA	NA	NA	137347596	137385378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
79295	chr9	+	2323	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	552.059824282457	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	NA	False	NA	NA	False	NA	NA	NA	54493764	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565_54510758_54510868
79296	chr2	+	7376	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	-43	3	-43	-3	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	1758	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAAAAATGGCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	153583150	153615227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
79297	chr9	-	3333	5	FSM	ENSMUSG00000032803.16	ENSMUST00000072249.13	3787	5	457	-3	46	-1	multi-exon	FALSE	canonical	3	423	junction_1	33.7740654941036	951	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGTGGAATGTGATGCT	NA	False	NA	NA	False	NA	NA	NA	103242280	103230303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_103233229_103233478_103233639_103237074_103237218_103241173_103241251_103242252
79298	chr13	-	2412	8	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	13	-6797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	347.400844758293	5	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGAGCTGTATAATCTG	5919	False	NA	NA	False	NA	NA	NA	38178120	38162173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38163777_38167413_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
79299	chr7	-	3805	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-20	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.187751916423	3	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTTACTTACTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	42155184	42122811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42123497_42123694_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42155033
79300	chr7	+	3823	17	NIC	ENSMUSG00000030852.19	novel	3492	16	NA	NA	-116	0	intron_retention	FALSE	canonical	3	154	junction_1	59.7013400184619	437	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGTGTGGCTGTGAGTTA	NA	False	NA	NA	False	NA	NA	NA	130247843	130366515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130248161_130264745_130264872_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
79301	chr2	-	2609	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	-19	23	-19	-23	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	1515	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCGCACTGAGACAGCAGT	NA	False	NA	NA	False	NA	NA	NA	103315524	103284216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
79303	chr10	+	4063	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	-95	-1050	-23	-3	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	551	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTCTATGTACAACTG	NA	False	NA	NA	False	NA	NA	NA	59159094	59209123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
79304	chr3	+	889	5	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	230	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1993.34685579304	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAAATGCCATACCGAT	3850	False	NA	NA	False	NA	NA	NA	88487207	88495708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494241_88495230
79305	chr18	+	3557	11	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	-47	235	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	774.205889928513	3	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATAGTTTATTGTAAC	796	False	NA	NA	False	NA	NA	NA	61688712	61723367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713563_61720496_61721155_61721587
79306	chr6	+	3020	11	Antisense	novelGene_ENSMUSG00000040234.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	558	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTACAATGAAAAAAGTTT	1534	False	NA	NA	False	NA	NA	NA	146503855	146527746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_146505520_146507625_146507787_146509074_146509174_146511312_146511467_146512371_146512453_146514875_146514962_146520030_146520208_146521335_146521504_146523367_146523494_146525061_146525213_146527593
79307	chr11	-	5514	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	7	10	7	-10	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	389	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTATAAAAGATAACAGTT	NA	False	NA	NA	False	NA	NA	NA	86435624	86389706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
79309	chr3	+	4391	22	NNC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	-14	0	intron_retention	FALSE	canonical	0	0	junction_12	101.401829696311	388	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTGCTGTGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	88243603	88269645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257508_88258003_88258142_88258285_88258893_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
79310	chr1	+	2578	17	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	120	-250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	527.137727348129	8	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATTTTCTTTTTTATCTT	3267	False	NA	NA	False	NA	NA	NA	180396613	180428567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180415920_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
79311	chr14	-	6102	16	NNC	ENSMUSG00000037722.9	novel	710	7	NA	NA	-65	24858	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	565.665916322425	2382	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTCCCAGGGCCCCGGT	NA	False	NA	NA	False	NA	NA	NA	45626315	45588932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_45588985_45592400_45592434_45594167_45594222_45596713_45596812_45604053_45604112_45605133_45605174_45605761_45605802_45605875_45605926_45608472_45608547_45609839_45609934_45610966_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
79312	chr5	+	2911	16	NNC	ENSMUSG00000028954.12	novel	3546	15	NA	NA	29	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	233.422592451259	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTGAATGTCTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	24891013	24915367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24891093_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986_24915013_24915228
79313	chr1	-	1196	6	Antisense	novelGene_ENSMUSG00000104351.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTCAAGACCCGGCCGGG	NA	False	NA	NA	False	NA	NA	NA	172355979	172327844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_172327898_172332684_172332894_172333326_172333501_172333750_172333852_172334129_172334702_172355892
79314	chr1	+	1468	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	-127	245	-127	-245	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAGGGACTTAATTTAT	9914	False	NA	NA	False	NA	NA	NA	172327486	172334702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
79315	chr1	-	3044	8	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	619	27	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	145.124436401374	1	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCTGGTTCCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	13196768	13183653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13196261
79316	chr8	+	2755	8	ISM	ENSMUSG00000003808.19	ENSMUST00000003906.13	1826	13	2	11	2	-10	intron_retention	FALSE	canonical	3	583	junction_4	52.4509489029162	2	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTAGGACTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	85583619	85595875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005
79317	chr7	-	2216	6	NNC	ENSMUSG00000030697.8	novel	1400	8	NA	NA	-9	-1	intron_retention	FALSE	canonical	3	23	junction_2	1164.80068681298	2	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTTAGGTTCTGTCAGGT	5217	False	NA	NA	False	NA	NA	NA	126391521	126385040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126386519_126386608_126386783_126387116_126387289_126387555_126387607_126388195_126388248_126391232
79318	chr7	+	4033	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	6	-673	6	673	multi-exon	FALSE	canonical	3	147	junction_1	0	219	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATGTGATGAGAACTTT	3239	False	NA	NA	False	NA	NA	NA	18962264	18982466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18962510_18978678
79319	chr10	+	1651	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	13	1262	13	-1262	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTTTAAGACTTAAGATTA	NA	False	NA	NA	False	NA	NA	NA	128173615	128197086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
79320	chrX	-	4508	17	Antisense	novelGene_ENSMUSG00000045103.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCTAGGGACAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	84248642	84087498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_84087640_84097575_84097633_84133416_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183105_84185335_84185442_84187633_84187772_84188516_84188556_84192735_84192799_84193815_84193885_84196632_84196789_84221303_84221552_84222302_84222428_84234211_84234317_84246079
79321	chr14	+	4786	6	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	-1286	intron_retention	FALSE	canonical	3	106	junction_5	10.1113797278116	49	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCGAAAAAAGGGACACCCA	NA	False	NA	NA	False	NA	NA	NA	21531501	21675508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022
79322	chr15	-	5416	31	NNC	ENSMUSG00000022443.18	novel	7433	41	NA	NA	30	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	83.487297769714	71	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCTTTGGTGTCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	77726345	77644789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77645930_77653427_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
79323	chr4	+	4271	17	NNC	ENSMUSG00000039768.17	novel	3151	16	NA	NA	0	-5	intron_retention	TRUE	non_canonical	0	0	junction_7	288.537015606317	25	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGAGAACAATGGGTTTG	9113	False	NA	NA	False	NA	NA	NA	152018190	152065670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152056235_152056275_152057516_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
79324	chr16	+	3924	15	NIC	ENSMUSG00000022905.13	novel	5039	14	NA	NA	80	881	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	163.253402627289	7	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGACTTTTCTTGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	35803803	35856382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35836256_35836380_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
79325	chr10	+	1240	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	16	5	-1	-5	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	21	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGTGTGTGTCACTAC	NA	False	NA	NA	False	NA	NA	NA	79540340	79547798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
79326	chr3	-	6437	12	NNC	ENSMUSG00000054414.5	novel	9020	11	NA	NA	36	-2398	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	34.2832151784982	245	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTCTAAAACCAGTGTT	144	False	NA	NA	False	NA	NA	NA	115801019	115735019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_115736192_115736340_115740361_115747700_115747851_115750519_115750611_115772292_115772429_115775410_115775462_115778473_115778624_115783660_115783788_115784375_115784464_115786574_115786689_115800482_115800585_115800783
79327	chr3	-	2862	2	NNC	ENSMUSG00000054414.5	novel	9020	11	NA	NA	-1036	-2062	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	90	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTAGGCCACTGCCTT	NA	False	NA	NA	False	NA	NA	NA	115737694	115734683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_115736192_115736340
79328	chr7	+	5163	4	Intergenic	novelGene_2950	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_1	92.2038803714657	5	76	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATTTTAAAATAAACAACT	NA	False	NA	NA	False	NA	NA	NA	42906419	42915054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42907732_42908790_42910237_42910431_42910493_42912710
79329	chr13	-	1503	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	0	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2062.94253563337	2	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGTGTAGTGAAATCTT	4760	False	NA	NA	False	NA	NA	NA	58550321	58540104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541563_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
79330	chr18	-	3019	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2124.23025764628	3	104	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTGTAATCTTCT	206	False	NA	NA	False	NA	NA	NA	35087403	35070466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074925_35075154_35076151_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
79331	chr14	-	3579	9	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-3	1202	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	104.450272259099	4	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATGATTTTTAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	21102534	21084879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21086772_21087180_21087326_21088045_21088254_21088994_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
79332	chr16	-	3041	12	NIC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	-94	22	intron_retention	FALSE	canonical	1	405	junction_2	370.244993716189	113	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATACGGAATCATAGTACC	8734	False	NA	NA	False	NA	NA	NA	91525957	91486187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
79333	chr1	+	3048	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	-24	-332	-24	332	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	1420	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATAAGAATTTCCATAAA	NA	False	NA	NA	False	NA	NA	NA	66739965	66759296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
79334	chr3	-	2173	12	NNC	ENSMUSG00000005625.16	novel	1332	10	NA	NA	-9	1031	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	897.143225434015	41	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTCTTGGACATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	94949872	94938973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94939670_94939893_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949096_94949184_94949818
79335	chr12	-	3623	13	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-208	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_12	86.8969296862029	172	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	65219586	65179507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
79336	chr11	-	2571	7	Antisense	novelGene_ENSMUSG00000020458.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACTTCCCTCATAAGTAT	NA	False	NA	NA	False	NA	NA	NA	29692270	29657008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_29658769_29683630_29683839_29686357_29686497_29690978_29691045_29691491_29691543_29691690_29691754_29691986
79337	chr6	-	3785	11	NIC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-535	-8	intron_retention	FALSE	canonical	3	615	junction_1	2007.26311180174	936	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTATGAATTGTGCACTG	NA	False	NA	NA	False	NA	NA	NA	51447409	51437919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51438899_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
79338	chr15	-	2247	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	192	1978	192	1623	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTAGTCTAATTTCTTG	347	False	NA	NA	False	NA	NA	NA	37007454	36999248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
79339	chr3	+	3262	9	NNC	ENSMUSG00000078578.10	novel	1512	8	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1045.762879433	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTGGTCTTACTCAGTA	NA	False	NA	NA	False	NA	NA	NA	135143998	135173957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955_135171118_135171501
79340	chr1	+	2191	15	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	7	-7	intron_retention	FALSE	canonical	2	12	junction_7	522.228935644598	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAGGCAGTTTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59724219	59750662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742384_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
79341	chr19	+	4627	2	Antisense	novelGene_ENSMUSG00000010095.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	82	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGCCGCTGGGCGGGTGT	NA	False	NA	NA	False	NA	NA	NA	8685957	8691232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_8688009_8688656
79342	chrX	+	2394	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-39	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1437.07243156137	1	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473301	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488898_100488941_100489724_100489810_100491199
79343	chr2	+	3148	24	FSM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	4	9	4	-9	multi-exon	FALSE	canonical	0	0	junction_15	83.6383654878219	27	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGATTTGAAACCTAGGTT	NA	False	NA	NA	False	NA	NA	NA	130266288	130286180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
79344	chr6	+	1596	9	NNC	ENSMUSG00000036371.7	novel	665	5	NA	NA	-11	-6	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	2670.03183209021	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCAGTTTAAAGCTTTC	9634	False	NA	NA	False	NA	NA	NA	67215148	67261284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67215355_67224347_67224486_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
79345	chr11	+	3511	19	NNC	ENSMUSG00000020280.13	novel	3559	18	NA	NA	57	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	40.6592282207394	255	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	23616244	23682876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23659882_23660073_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
79346	chr1	+	2861	16	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	-50	683	combination_of_known_junctions	FALSE	canonical	3	171	junction_3	590.490628394916	3061	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTCTTAGCTACTTTGG	NA	False	NA	NA	False	NA	NA	NA	59724079	59751352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
79347	chr13	-	2802	15	NNC	ENSMUSG00000021577.15	novel	2900	15	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	749.531625859286	2	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTGCTTTTGGTCAAGG	NA	False	NA	NA	False	NA	NA	NA	74498358	74470378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74471276_74471955_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479571_74480211_74480385_74481136_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
79348	chr12	-	3899	11	NIC	ENSMUSG00000020547.6	novel	1871	12	NA	NA	18	-16	intron_retention	FALSE	canonical	3	931	junction_8	85.7956292593043	30	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATCCTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	36206806	36141849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
79349	chr2	-	3074	9	NNC	ENSMUSG00000026878.18	novel	3081	8	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_8	428.286046352201	695	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9644	False	NA	NA	False	NA	NA	NA	35091040	35070216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35089936_35090022_35090771
79350	chr12	-	7734	36	FSM	ENSMUSG00000035181.7	ENSMUST00000040583.7	7763	36	19	10	-5	-10	multi-exon	FALSE	canonical	1	15	junction_35	10.655036176305	106	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTAATGTTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	52018085	51922663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_51924400_51926037_51926252_51927896_51928049_51931049_51931275_51934780_51935054_51935636_51935785_51936369_51936498_51938004_51938251_51940432_51940656_51941045_51941226_51943345_51943415_51944529_51944712_51945837_51946075_51952103_51952284_51956740_51956877_51961756_51961927_51962849_51963040_51965366_51965524_51967172_51967361_51968120_51968227_51971780_51971957_51972036_51972201_51976973_51977084_51984853_51984954_51986353_51986507_51992203_51992316_51994537_51994789_51996714_51996871_51997711_51997968_51999269_51999428_52002162_52002338_52002903_52003054_52003861_52003971_52005635_52005848_52008215_52008428_52017985
79351	chr4	+	3562	33	NNC	ENSMUSG00000053510.13	novel	3784	33	NA	NA	18	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	162.62182933112	49	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACGTGTATTTAAAGACG	9958	False	NA	NA	False	NA	NA	NA	108857869	108918349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108858191_108858255_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913744_108913784_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
79352	chr8	-	1894	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	2029	-3	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	2012.76101136943	1	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAATGAGTTCAATTTC	NA	False	NA	NA	False	NA	NA	NA	43757944	43748106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43757597_43757679
79355	chr3	-	1796	10	ISM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	66	1400	66	-1400	5prime_fragment	FALSE	canonical	3	1537	junction_4	124.940084405918	240	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTGGGCCAGGCTAGA	NA	False	NA	NA	False	NA	NA	NA	98247240	98221885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
79356	chr3	-	1823	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	532.478843718945	9	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	NA	False	NA	NA	NA	98247257	98220485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220774_98221483_98221722_98222401_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
79357	chrX	+	2792	5	NNC	ENSMUSG00000031381.17	novel	3321	4	NA	NA	-3651	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	107.903602812881	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTTATTTTTGTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	163199131	163216905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_163199171_163210927_163211061_163211535_163211669_163211806_163212014_163214625
79358	chr11	-	2816	18	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-12	-942	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	161.656883852454	1	57	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGCTCCTTTCTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	40624230	40593163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598956_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
79359	chr9	+	1369	4	NIC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	1	-5	intron_retention	FALSE	canonical	3	10044	junction_1	2845.69737596174	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTAAATCTCATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	120400580	120403493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_120400608_120401161_120401929_120402641_120402884_120403160
79360	chr9	+	1563	4	NIC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	16	-9	intron_retention	FALSE	canonical	3	10044	junction_1	3251.09031283694	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGTGGTAAATCTCATGT	NA	False	NA	NA	False	NA	NA	NA	120400525	120403489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_120400608_120401161_120401264_120401833_120402884_120403160
79361	chr9	-	548	4	Antisense	novelGene_ENSMUSG00000025794.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCACCCGAGTACAGGGT	NA	False	NA	NA	False	NA	NA	NA	120403488	120401867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_120401921_120402628_120402740_120402827_120402883_120403159
79362	chr9	+	627	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	625	19	44	-19	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCTTTTTGACGGTGGTA	NA	False	NA	NA	False	NA	NA	NA	120401204	120403479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
79363	chr9	+	2354	2	ISM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	71	232	1	-10	intron_retention	FALSE	canonical	3	10044	junction_1	0	17	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGTGGTAAATCTCATG	NA	False	NA	NA	False	NA	NA	NA	120400580	120403488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_120400608_120401161
79364	chr9	+	635	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	637	-1	56	1	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	5	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCATGTGTGGACTCTA	NA	False	NA	NA	False	NA	NA	NA	120401216	120403499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
79365	chr1	+	6841	9	FSM	ENSMUSG00000025958.15	ENSMUST00000190348.2	1260	9	-98	-5483	-1	-1588	multi-exon	FALSE	canonical	3	25	junction_4	27.9773904251272	215	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAACTCTGTAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	64571954	64642119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64598885_64598928_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
79366	SIRV6	+	1471	10	FSM	SIRV6A	SIRV612	1528	10	0	57	0	-56	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTCGATTATTGCCTA	NA	False	NA	NA	False	NA	NA	NA	1087	11768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
79367	chr17	-	3416	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-214	-3	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_5	22.8508205541945	111	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTGGACTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	22181659	22145943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22172962_22181236
79368	chr19	-	2257	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1040.41397259697	178	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCCTCCCTGCCCCTGCC	NA	False	NA	NA	False	NA	NA	NA	8691236	8684870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690639_8690741
79369	chr8	-	2831	5	FSM	ENSMUSG00000003814.9	ENSMUST00000154774.2	943	5	-2093	205	-75	-205	multi-exon	FALSE	canonical	3	1284	junction_2	56.0908860689506	3	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTTAAGGAAGAAGAAGAGG	NA	False	NA	NA	False	NA	NA	NA	85573638	85569429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202
79370	chr7	-	3656	6	ISM	ENSMUSG00000042502.11	ENSMUST00000166791.8	3284	7	97	-2	-28	2	3prime_fragment	FALSE	canonical	3	578	junction_3	18.2274518241031	181	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTTTTTTG	5555	False	NA	NA	False	NA	NA	NA	126795075	126790829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532
79371	chr1	+	4698	8	NIC	ENSMUSG00000026554.16	novel	4656	13	NA	NA	-936	-10	intron_retention	FALSE	canonical	3	524	junction_1	29.34245374601	1	139	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAACTTGGATGTATCAA	NA	False	NA	NA	False	NA	NA	NA	172000584	172023023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172016637_172020084_172020205_172021351_172021469_172022122
79372	chrX	-	3292	2	Antisense	novelGene_ENSMUSG00000025246.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	180	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACTTTGTCTCCTCGAGC	987	False	NA	NA	False	NA	NA	NA	76706590	76702386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_76702409_76703320
79374	chr17	+	1981	15	NNC	ENSMUSG00000062691.11	novel	602	5	NA	NA	3191	14746	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	22	4	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTATTTATCACCTGCACA	NA	False	NA	NA	False	NA	NA	NA	79227319	79242481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79227445_79227975_79228060_79228150_79228207_79229062_79229153_79229560_79229750_79229946_79230001_79230664_79230759_79231865_79231945_79233345_79233412_79233511_79233622_79234303_79234352_79236706_79236793_79238735_79238925_79239537_79239773_79242005
79375	chr14	-	2772	14	NIC	ENSMUSG00000021814.18	novel	2904	14	NA	NA	15	-3	combination_of_known_junctions	FALSE	canonical	2	9	junction_9	380.592251022615	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCTCTTTTGACCTAGA	8218	False	NA	NA	False	NA	NA	NA	20529961	20505347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517525_20517592_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
79376	chr2	+	3833	3	FSM	ENSMUSG00000086454.8	ENSMUST00000146553.8	770	3	16	-3079	0	-294	multi-exon	FALSE	canonical	3	184	junction_1	196.5	380	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGCCTACACAGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	104389523	104401480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_104389830_104390068_104390321_104398205
79377	chr13	+	4150	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	51	-1437	51	1437	multi-exon	FALSE	canonical	3	54	junction_2	70.5	726	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGCTATTCTTCACACCT	NA	False	NA	NA	False	NA	NA	NA	97619259	97634952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_97619286_97619456_97619541_97630912
79378	chr10	+	2481	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	99	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	272.669980686079	2	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGCCTTGTGTCTCT	7089	False	NA	NA	False	NA	NA	NA	60113548	60138376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60137733_60137800
79379	chrX	-	7114	18	NIC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	1831	-16	intron_retention	FALSE	canonical	3	303	junction_15	74.4181582931009	4	70	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTTTTTTTGAAATAACC	NA	False	NA	NA	False	NA	NA	NA	72999204	72986418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060
79380	chr16	-	4278	6	NIC	ENSMUSG00000022544.15	novel	987	7	NA	NA	6	-7	intron_retention	FALSE	canonical	3	438	junction_1	20.4215572373901	634	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGATTATGTGCGCATG	NA	False	NA	NA	False	NA	NA	NA	5073814	5062022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_5065464_5066428_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
79381	chr9	-	2995	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	-139	-3	-29	3	multi-exon	FALSE	canonical	3	122	junction_5	120.736887991548	510	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATGTTGCATGGTGTGA	NA	False	NA	NA	False	NA	NA	NA	114469281	114414942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
79383	chr12	+	2870	14	Antisense	novelGene_ENSMUSG00000020664.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1634	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATCGCCGAGGAGCAGCG	NA	False	NA	NA	False	NA	NA	NA	31380942	31401440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_31382242_31382337_31382427_31383422_31383559_31383859_31384056_31384611_31384783_31385464_31385655_31390277_31390381_31390862_31391003_31391372_31391480_31392743_31392812_31393372_31393443_31394821_31394904_31399596_31399675_31401299
79384	chr10	-	5105	11	FSM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	-15	34	-15	-34	multi-exon	FALSE	canonical	3	285	junction_4	40.3910881259715	911	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGACTATCCACAAATAAATA	6787	False	NA	NA	False	NA	NA	NA	78300824	78272611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
79385	chr4	-	3444	6	NNC	ENSMUSG00000029007.9	novel	3996	5	NA	NA	66	-514	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	560.839156978184	59	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAAGGTACCCTGAGAT	NA	False	NA	NA	False	NA	NA	NA	148172422	148162031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148163099_148163307_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172136
79387	chr3	-	2637	1	FSM	ENSMUSG00000104528.2	ENSMUST00000196744.2	2231	1	307	-713	307	713	mono-exon	FALSE	NA	NA	NA	NA	NA	16	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	NA	False	NA	NA	NA	157602521	157599884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_157599900_157602500
79388	chr18	+	2564	8	FSM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	-63	-79	-63	79	multi-exon	FALSE	canonical	3	116	junction_1	133.739008703443	1299	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTAATGCCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	21134334	21160671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
79389	chr3	+	6818	19	ISM	ENSMUSG00000028034.16	ENSMUST00000200452.5	4525	22	-21	-1	2	1	intron_retention	FALSE	canonical	1	416	junction_13	269.953956979498	206	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGAGTGTTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	151916136	151942464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513
79390	chr17	+	5886	9	Genic_Genomic	ENSMUSG00000084862.2	novel	2071	2	NA	NA	7360	6190	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	85	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTTCCGCCGGCTCCGC	6707	False	NA	NA	False	NA	NA	NA	26145422	26160909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_26146731_26147764_26147827_26149494_26149612_26149934_26150012_26150431_26151337_26151390_26153852_26153975_26154108_26155736_26156433_26160781
79391	chr11	+	1593	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	-1	34	-1	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGGACAGTCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653618	120655211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653600_120655200
79392	chr8	-	3137	20	NNC	ENSMUSG00000002885.15	novel	2867	19	NA	NA	-1120	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.4532801515242	81	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAGCTTTGGAACAATAA	NA	False	NA	NA	False	NA	NA	NA	84469075	84449878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84450548_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735_84467884_84469016
79393	chr8	+	3406	13	NIC	ENSMUSG00000001482.16	novel	589	4	NA	NA	-83	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	99.7624957364016	492	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	124173594	124190009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_124173893_124174055_124174103_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
79394	chr10	+	5018	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	0	5	0	-5	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	887	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGAATGCTCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	111808568	111824332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
79395	chrX	+	2857	8	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-69	384	intron_retention	FALSE	canonical	3	856	junction_4	287.08421576042	318	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGCAGCTTTGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	72235743	72246920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
79396	chr5	+	1995	15	NNC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	-2	953	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	265.48442438651	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGTTTCAGGTCAGCC	NA	False	NA	NA	False	NA	NA	NA	31652108	31669156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175_31668802_31668834
79397	chr5	-	3397	12	NNC	ENSMUSG00000029246.15	novel	4158	12	NA	NA	-54	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	180.386133127781	13	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTTGCATCTGATTTT	NA	False	NA	NA	False	NA	NA	NA	77099066	77061178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_77061528_77061696_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
79399	chr4	+	5699	21	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-9473	0	intron_retention	FALSE	canonical	3	584	junction_4	255.581513415975	10	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	137336308	137385842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533
79400	chr16	-	7625	30	FSM	ENSMUSG00000052299.10	ENSMUST00000039449.9	7743	30	110	8	61	-8	multi-exon	FALSE	canonical	3	140	junction_26	19.3535231547588	115	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTATTCTCTGGCCCA	NA	False	NA	NA	False	NA	NA	NA	87229390	87173546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_87175896_87176563_87176732_87177554_87177750_87178349_87178571_87179502_87179675_87191409_87191597_87194041_87194117_87194674_87194913_87195539_87195754_87196900_87197052_87197216_87197353_87198913_87199057_87200893_87200999_87202413_87202574_87205587_87205775_87206189_87206335_87207194_87207349_87208506_87208747_87209262_87209450_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
79401	chr6	+	1790	7	NNC	ENSMUSG00000029836.16	novel	1889	6	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	1005.90639060832	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTGATGACTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	51447683	51460680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_51447720_51448411_51448491_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
79402	chr6	+	1666	5	ISM	ENSMUSG00000029836.16	ENSMUST00000114446.8	1719	6	1121	13	1070	-13	3prime_fragment	FALSE	canonical	3	882	junction_4	654.089968964515	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATTCCTTTATGTGATG	NA	False	NA	NA	False	NA	NA	NA	51448795	51460671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
79403	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	223	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	8315	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
79404	chr12	-	3688	15	NNC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	105.162095483737	15	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	65219402	65179507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65195702_65196078_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
79405	chr15	+	2483	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	8	1220	-6	607	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	1485	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGCTAAGGATGGATAT	NA	False	NA	NA	False	NA	NA	NA	80832698	80853927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
79407	chr2	+	2868	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	-121	-12	-104	12	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	466	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCTGGAGCCCTGACATAA	NA	False	NA	NA	False	NA	NA	NA	115412092	115609261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
79409	chr1	-	2251	1	Antisense	novelGene_ENSMUSG00000046062.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCTTTTCCATTCTGAG	4248	False	NA	NA	False	NA	NA	NA	133067515	133065264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_133065300_133067500
79410	chr4	+	5114	25	FSM	ENSMUSG00000028552.14	ENSMUST00000175776.8	2802	25	-122	-2190	-13	-162	multi-exon	FALSE	canonical	3	25	junction_9	34.7439043414653	206	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACTATATCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	109137486	109244852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178523_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
79411	chr15	-	1825	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	41	-63	41	63	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	7	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCTCAGAGGAAAGGGTT	NA	False	NA	NA	False	NA	NA	NA	98851543	98847654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
79412	chr8	+	2492	16	NNC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	105	-45	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	569.590519584026	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAGCAATTGAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	75836356	75854271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_75836503_75836719_75836845_75836927_75837057_75839171_75839336_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
79413	chr15	-	7263	10	NNC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-34	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	425.669958512751	25	133	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGAATACTTGGACGGAA	NA	False	NA	NA	False	NA	NA	NA	98432179	98415545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98417429_98418198_98421674_98421727_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
79414	chr3	+	3291	18	NIC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	-1	100	combination_of_known_junctions	FALSE	canonical	3	36	junction_15	384.426270035524	2102	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGCTTTCATTCGGAAG	4855	False	NA	NA	False	NA	NA	NA	34074252	34124571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34119122_34119204_34122309_34122402_34123065
79415	chr4	+	2992	13	NIC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	-40	1274	intron_retention	FALSE	canonical	3	246	junction_9	29.3005261613735	660	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAAAGGATTATTTTCTA	NA	False	NA	NA	False	NA	NA	NA	62326993	62342842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340760_62340839_62340959_62341454
79416	chr19	-	2370	11	NNC	ENSMUSG00000024826.16	novel	3314	11	NA	NA	0	-58	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	226.702536377518	50	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCATATTTAGTTCCTG	1336	False	NA	NA	False	NA	NA	NA	5962835	5947472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954396_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
79417	chrY	+	4410	8	Intergenic	novelGene_4715	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	147	195	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATCCCCAGACAGAGAGT	6577	False	NA	NA	False	NA	NA	NA	90747948	90833923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_90748297_90749056_90749200_90750015_90750081_90824658_90824846_90825117_90825297_90826254_90826475_90830573_90833771_90833852
79418	chr5	-	2730	6	ISM	ENSMUSG00000029328.16	ENSMUST00000149384.8	1477	8	1260	-1838	-512	-11	3prime_fragment	FALSE	canonical	3	230	junction_1	331.324614238061	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATAAAATCTCAGTTA	NA	False	NA	NA	False	NA	NA	NA	100185494	100181446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426
79419	chr19	+	5609	10	NNC	ENSMUSG00000045098.20	novel	6130	13	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	100.208055170169	92	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCAGTGTTCACTGTA	NA	False	NA	NA	False	NA	NA	NA	3818169	3868303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854900_3855054_3857224_3857422_3864114
79420	chr15	-	3492	4	NNC	ENSMUSG00000022426.7	novel	3440	4	NA	NA	12592	3386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8879	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGCGAAGCGGCCCACC	NA	False	NA	NA	False	NA	NA	NA	79559528	79555065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79555208_79555371_79555490_79556094_79556213_79556414
79421	chr8	+	4806	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	0	32	0	-32	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	398	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGTGCTGGGATTAAAGG	NA	False	NA	NA	False	NA	NA	NA	27513826	27530324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
79422	chr2	+	7213	30	FSM	ENSMUSG00000033902.13	ENSMUST00000066058.8	6942	30	-284	13	-284	-13	multi-exon	FALSE	canonical	2	8	junction_8	4.52526268609031	83	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGCTAGCAAATTCTGAG	3121	False	NA	NA	False	NA	NA	NA	119802895	119857876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119803650_119828962_119829055_119841223_119841287_119841482_119841541_119842413_119842585_119843073_119843212_119843392_119843576_119844099_119844261_119845103_119845294_119845823_119845971_119846173_119846350_119847260_119847353_119847620_119847747_119848061_119848133_119848236_119848359_119848779_119848856_119848968_119849081_119849402_119849467_119849706_119849842_119850032_119850170_119850358_119850415_119851564_119851802_119852211_119852379_119852570_119852717_119852817_119853013_119853176_119853262_119853512_119853797_119854023_119854621_119854998_119855085_119855584
79423	chr5	+	3614	8	NNC	ENSMUSG00000025538.16	novel	1656	10	NA	NA	0	1532	intron_retention	FALSE	non_canonical	0	0	junction_6	169.868856979226	12	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGGCCCTTCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	129875860	129894423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887122_129888958_129889056_129891479
79424	chr14	-	4167	14	NNC	ENSMUSG00000037526.8	novel	3729	11	NA	NA	-6150	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	58.3169264049936	188	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACTTGGCTGTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	47814256	47778353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47780601_47783084_47783171_47783247_47783339_47784697_47784816_47786375_47786606_47788704_47788943_47792016_47792099_47796630_47796674_47798077_47798141_47805642_47806089_47809102_47809269_47812372_47812595_47813988_47814069_47814201
79425	chr4	+	4217	17	NIC	ENSMUSG00000028614.15	novel	4584	18	NA	NA	-32	1	combination_of_known_splicesites	FALSE	canonical	3	12	junction_5	152.22716372251	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTGAGACTGTTCATCA	NA	False	NA	NA	False	NA	NA	NA	107225216	107273521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
79426	chr6	-	2548	18	NNC	ENSMUSG00000030061.17	novel	2561	18	NA	NA	2	-10	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_16	169.693882744283	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTATTGGAAAACTTAAA	NA	False	NA	NA	False	NA	NA	NA	97182518	97160977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97181875_97182309_97182493
79427	chr7	-	2543	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	-2	-416	-2	415	multi-exon	TRUE	canonical	3	296	junction_6	379.595691346581	2250	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTTAAGAAACC	NA	False	NA	NA	False	NA	NA	NA	78798810	78783100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
79428	chrX	+	2849	11	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	19	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1444.19922794606	7	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105230787	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241999_105242572_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
79429	chr8	+	3437	21	NIC	ENSMUSG00000025812.19	novel	3394	21	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	38.4076489777753	36	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAGTGGCTGTTGACGA	NA	False	NA	NA	False	NA	NA	NA	127791087	128159622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_127791224_127887959_127888062_128003501_128003683_128032810_128032990_128050521_128050654_128083755_128083848_128086207_128086292_128096728_128096855_128097976_128098360_128103224_128103365_128104666_128104796_128106945_128106985_128114990_128115180_128115808_128115980_128125080_128125241_128131855_128132046_128136036_128136189_128137209_128137255_128142050_128142279_128153002_128153235_128159275
79430	chr14	-	2296	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	926	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1079.59586622727	34	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTTGTTTTCCAGTAT	NA	False	NA	NA	False	NA	NA	NA	63746217	63728869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733252_63733535_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
79431	chr10	-	1680	6	Antisense	novelGene_ENSMUSG00000025395.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGGAACTCACTTTGTA	NA	False	NA	NA	False	NA	NA	NA	127865849	127858474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127859542_127859647_127859789_127862384_127862455_127862919_127863004_127865050_127865153_127865633
79432	chr3	-	1875	7	Genic_Genomic	ENSMUSG00000105813.2	novel	3339	1	NA	NA	-30624	-2427	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCCGGAGAAGCCCGAACG	NA	False	NA	NA	False	NA	NA	NA	121251847	121220311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_121220476_121243595_121243720_121243940_121244006_121245029_121245167_121245527_121245647_121248593_121248740_121250727
79433	chr6	+	2274	3	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	4249	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2058	31	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTTTAGTGGTCTTATC	NA	False	NA	NA	False	NA	NA	NA	122688775	122691583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122689675_122690100_122690596_122690703
79434	chr11	-	4350	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	0	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	270.353883312636	57	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAACTCATACACCCAA	NA	False	NA	NA	False	NA	NA	NA	40624243	40592232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_40592459_40592802_40594025_40594238_40594763_40596718_40596896_40598172_40598277_40598391_40598545_40598841_40598992_40600631_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
79435	chr17	-	3084	4	Genic_Genomic	ENSMUSG00000117050.2	novel	1046	1	NA	NA	-7724	-357	multi-exon	TRUE	non_canonical	0	0	junction_1	0	86	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTGGCGTCGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	29321159	29312746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_29312834_29317368_29320142_29320867_29321006_29321073
79436	chr8	-	7439	46	ISM	ENSMUSG00000014444.18	ENSMUST00000067252.14	8216	51	49019	23	-2425	0	3prime_fragment	FALSE	canonical	3	58	junction_45	24.2382821377187	118	16	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACGGACTGTCACAGAC	7168	False	NA	NA	False	NA	NA	NA	123229049	123208459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_123208971_123209048_123209266_123209387_123209468_123209607_123209731_123209795_123209969_123210057_123210151_123210224_123210414_123211467_123211616_123211700_123211860_123211995_123212211_123212328_123212477_123212562_123212696_123213045_123213359_123213493_123213683_123213748_123214008_123214213_123214421_123214576_123214684_123214813_123214987_123215072_123215130_123215199_123215294_123215837_123215939_123216293_123216366_123216801_123216903_123216977_123217068_123217593_123217766_123217857_123217955_123218053_123218298_123218397_123218552_123219345_123219451_123221528_123221734_123222155_123222357_123222472_123222599_123223141_123223319_123223478_123223640_123224190_123224304_123224544_123224728_123224889_123225039_123225131_123225311_123225398_123225511_123226366_123226625_123226942_123227044_123227900_123227989_123228068_123228156_123228244_123228417_123228504_123228719_123228860
79437	chr13	+	3861	5	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	50	649	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	79.0454774164847	599	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACAATACTAGCGTCTT	NA	False	NA	NA	False	NA	NA	NA	97619258	97634164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912_97633224_97633300
79438	chr11	-	4149	19	Antisense	novelGene_ENSMUSG00000017119.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	89	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGACCGGGCCTAGTCCCA	NA	False	NA	NA	False	NA	NA	NA	101472759	101443680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_101443782_101444814_101444919_101446631_101446696_101446995_101447128_101455431_101455651_101456527_101456607_101457020_101457235_101457918_101458087_101459222_101459435_101460081_101460240_101460321_101460613_101462107_101462258_101462725_101462803_101463632_101463799_101463928_101464002_101465816_101466246_101467130_101467234_101468017_101468076_101471408
79439	chr11	-	3985	10	FSM	ENSMUSG00000020863.16	ENSMUST00000107820.2	3478	10	3	-510	3	432	multi-exon	FALSE	canonical	3	230	junction_9	26.1850018328748	119	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTAGCAGCATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	94212811	94181454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
79440	chr3	-	6485	26	NNC	ENSMUSG00000028029.12	novel	535	4	NA	NA	-157238	-4282	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	102	12	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGCCGCCTCGGGTCGGC	NA	False	NA	NA	False	NA	NA	NA	132547369	132389921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_132390154_132392530_132392753_132400142_132400215_132411271_132411387_132413543_132413619_132421348_132421485_132424372_132424441_132426280_132426341_132428063_132428127_132428426_132428576_132430534_132430676_132431421_132431522_132432417_132432467_132432809_132432940_132437924_132438024_132440105_132440171_132440478_132440604_132441832_132441884_132443263_132443348_132448760_132448847_132456945_132456985_132458266_132458427_132480177_132480355_132507261_132507441_132520950_132521109_132543719
79441	chr2	-	6417	26	NNC	ENSMUSG00000026867.20	novel	5758	26	NA	NA	-5	-1	intron_retention	FALSE	canonical	0	0	junction_9	50.9021649834268	175	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGCTGCAGGGCTCTTT	5925	False	NA	NA	False	NA	NA	NA	34644428	34566196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589833_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607264_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
79442	chr1	-	4637	27	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	135	14	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTACCAGCTTAACTGACT	2437	False	NA	NA	False	NA	NA	NA	87648225	87548092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87548354_87563013_87563070_87593098_87593259_87595609_87595785_87597362_87597504_87604003_87604088_87609206_87609290_87609406_87609479_87611462_87611588_87619346_87619449_87623049_87623157_87625069_87625266_87625831_87625952_87626748_87626845_87627359_87627500_87628880_87628990_87629135_87629225_87630838_87630921_87633654_87633745_87635816_87635931_87637337_87637421_87638784_87638874_87639751_87639902_87640913_87641010_87642996_87643034_87645409_87646005_87647040
79443	chr3	+	2804	18	NNC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	-3	-345	intron_retention	FALSE	non_canonical	0	0	junction_7	509.147506515551	8	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTTTAACTTTCTACTT	4846	False	NA	NA	False	NA	NA	NA	34074243	34124126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34075700_34075800_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101788_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065_34123442_34123589
79444	chr4	+	4374	17	Antisense	novelGene_ENSMUSG00000037622.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	155	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCAAGGCCTCTGGAAT	7972	False	NA	NA	False	NA	NA	NA	133019780	133080778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133020550_133020711_133021699_133022510_133022705_133023729_133023907_133024730_133024966_133027870_133028046_133029029_133029139_133029693_133029765_133030859_133030976_133031459_133031557_133033134_133033320_133036060_133036248_133040617_133040730_133041070_133041117_133049481_133049566_133051137_133051284_133080094
79445	chr4	-	4676	21	NNC	ENSMUSG00000029016.14	novel	3306	23	NA	NA	-19	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	29.4419343793848	9	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTCTCTGTAGACCTTG	7446	False	NA	NA	False	NA	NA	NA	148123246	148088728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095159_148098146_148098240_148098323_148098484_148098588_148098743_148098957_148099085_148101308_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
79446	chr13	-	5032	11	NNC	ENSMUSG00000021713.10	novel	2342	11	NA	NA	14	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	100.099950049938	77	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATATACGTGTCAAATGA	NA	False	NA	NA	False	NA	NA	NA	104365316	104341632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104355686_104355737_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
79447	chr18	+	3260	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26641	77	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	461.292742282859	1	130	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTACTAAATCTCATTTTC	6444	False	NA	-78	True	NA	NA	NA	77126262	77241573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185351_77193510_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232843_77237761_77237795_77240310
79448	chr2	+	3016	9	NNC	ENSMUSG00000027287.15	novel	2730	9	NA	NA	6	1794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	126.116451642916	771	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTAGGTTCCTAATTTAT	NA	False	NA	NA	False	NA	NA	NA	120398183	120433530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756_120431292_120432760
79449	chr5	+	3298	11	Antisense	novelGene_ENSMUSG00000029512.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	522	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTCGCTCTGGGATGGT	NA	False	NA	NA	False	NA	NA	NA	110932354	110938777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_110934096_110934167_110934298_110934942_110935108_110935439_110935559_110935638_110935812_110935975_110936169_110936596_110936739_110936813_110936922_110937205_110937401_110938076_110938345_110938713
79450	chr15	+	8525	21	FSM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	-19	1	-19	-1	multi-exon	FALSE	canonical	3	74	junction_13	16.8330032970947	119	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTTGGATAAGTGACTT	NA	False	NA	NA	False	NA	NA	NA	96185434	96302872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_96185668_96185774_96185869_96186935_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
79451	chr16	-	3848	11	NIC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	-5	-3	intron_retention	FALSE	canonical	1	405	junction_2	383.899218545701	106	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAACTGCTTTCAGCAA	9175	False	NA	NA	False	NA	NA	NA	91525516	91486416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91486804_91487591_91487638_91489486_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
79452	chr1	+	4695	2	FSM	ENSMUSG00000066652.6	ENSMUST00000155546.2	422	2	-2349	-1924	-999	308	multi-exon	FALSE	canonical	3	1148	junction_1	0	93	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAAGTTGTCAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	180719673	180726976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180722407_180725014
79453	chr7	+	3692	9	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	8	3	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	121.410203442709	890	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACTATAGCGTGTAAG	NA	False	NA	NA	False	NA	NA	NA	12568695	12584507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12569092_12569373_12569455_12569881_12569988_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
79454	chr4	-	3935	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	170	-1128	170	1128	multi-exon	FALSE	canonical	3	844	junction_1	0	498	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCATTGTTTGTGCATG	139	False	NA	NA	False	NA	NA	NA	11007506	10987533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_10991355_11007392
79455	chr11	-	5071	16	NIC	ENSMUSG00000009079.17	novel	2588	17	NA	NA	15	-2	intron_retention	FALSE	canonical	3	3872	junction_7	651.725286366034	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAACTGTCATCCTCCT	NA	False	NA	NA	False	NA	NA	NA	5049027	5019699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
79456	chr1	-	4164	30	NIC	ENSMUSG00000040648.16	novel	6239	31	NA	NA	350	66	combination_of_known_junctions	FALSE	canonical	0	0	junction_18	69.3342384617281	3	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTTATACATCTGTGTA	9184	False	NA	NA	False	NA	NA	NA	97697786	97635323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_97635556_97639447_97639574_97640728_97640870_97644266_97644330_97645166_97645287_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
79457	chr8	+	4313	24	NNC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	4	417	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	52.1592370663352	301	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCTCTCAAGTAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	85809902	85825328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85810118_85811029_85811133_85811236_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
79458	chr1	+	2667	14	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	12	-3	intron_retention	FALSE	canonical	3	306	junction_3	462.890775261816	11	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724224	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
79459	chr5	-	3217	1	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	2041	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATAACAAGTCCATTGT	NA	False	NA	NA	False	NA	NA	NA	123869716	123866499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123866500_123869700
79460	chr1_MU069434v1_random	-	3220	2	Intergenic	novelGene_4790	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	94	junction_1	0	137	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGATGTATTCACTC	NA	False	NA	NA	False	NA	NA	NA	7797	4489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_MU069434v1_random_-_7461_7548
79461	chr12	-	5466	23	ISM	ENSMUSG00000041415.12	ENSMUST00000041987.8	9851	27	22701	3687	913	-1	3prime_fragment	FALSE	canonical	3	188	junction_19	37.6981267482958	226	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTAATTTTGGTTTAGTT	NA	False	NA	NA	False	NA	NA	NA	104695510	104657687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_104658018_104658385_104658462_104658561_104658725_104660736_104661006_104662532_104663404_104666623_104666780_104668660_104669442_104670324_104670501_104670977_104671084_104671311_104671495_104672471_104672626_104672809_104673024_104673111_104673292_104675034_104675175_104676043_104676120_104676883_104677017_104678439_104678595_104679253_104679497_104681032_104681166_104688229_104688703_104690160_104690330_104694591_104694753_104695386
79462	chr10	+	3672	23	NIC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	-2	-10	intron_retention	FALSE	canonical	3	135	junction_2	28.0579756931964	1	116	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCATGAACAGGGTTTAT	9154	False	NA	NA	False	NA	NA	NA	41352370	41363016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
79463	chr3	+	2208	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	18	4	18	1	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	5459	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCAGACCGGCTTGACTTT	NA	False	NA	NA	False	NA	NA	NA	89986864	90008204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
79464	chr18	+	3830	15	NNC	ENSMUSG00000037236.17	novel	6262	15	NA	NA	0	54	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	327.299440068858	1	143	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTCCGTTGTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	35695271	35724526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715892_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
79465	chr15	-	2014	1	NIC	ENSMUSG00000063354.8	novel	2063	11	NA	NA	7	-288	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCGGACAGGAAAGCCAG	8673	False	NA	NA	False	NA	NA	NA	76501041	76499027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76499000_76501000
79466	chr2	+	4045	31	NIC	ENSMUSG00000038685.19	novel	4401	34	NA	NA	-15	3	intron_retention	FALSE	canonical	2	8	junction_19	68.7437189049944	1	67	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGCCCATGCAACTTC	NA	False	NA	NA	False	NA	NA	NA	180961516	180997813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180996236_180996801_180996919_180997102_180997346_180997443
79467	chr3	+	2360	16	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	13	-5674	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_14	298.521646339647	8	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTGTGTCTGGGTAAATA	NA	False	NA	NA	False	NA	NA	NA	63883539	63924326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922903_63923019_63924053
79468	chr18	-	3324	6	FSM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	-1	5	-1	-5	multi-exon	FALSE	canonical	3	266	junction_2	22.8962879087419	739	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCATTGGTTGTGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	40352483	40336953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
79469	chr7	+	1839	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	362	-2	220	2	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	62	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTTTCTCTTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	121759023	121769098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
79470	SIRV3	+	1800	2	FSM	SIRV3A	SIRV302	1807	2	-1	8	-1	-8	multi-exon	FALSE	canonical	3	834	junction_1	0	418	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCATCTCATTTAACAGG	NA	False	NA	NA	False	NA	NA	NA	1962	7814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_6057
79471	chr6	+	5327	17	Intergenic	novelGene_4194	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	614	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTGGTGCAACAATGT	NA	False	NA	NA	False	NA	NA	NA	82702010	82751417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_82704436_82705692_82705931_82706528_82706680_82707746_82707932_82708027_82708125_82709079_82709178_82711828_82711951_82712229_82712377_82713510_82713818_82715268_82715502_82716499_82716654_82719781_82719966_82720246_82720348_82720924_82721022_82721842_82721963_82726169_82726321_82750900
79472	chr2	+	3747	19	NNC	ENSMUSG00000027353.15	novel	3179	19	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	41.7578631613552	9	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAGAAGTCTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	132658061	132686120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132658386_132658993_132659166_132659624_132659973_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
79473	chr9	-	6024	24	NIC	ENSMUSG00000032340.9	novel	5414	28	NA	NA	3332	-5	combination_of_known_junctions	FALSE	canonical	3	63	junction_21	19.9702046490267	136	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGCCCCAAAGATGTGT	NA	False	NA	NA	False	NA	NA	NA	58886059	58781974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_58784641_58785310_58785448_58787874_58788139_58791752_58791912_58795683_58795777_58796264_58796504_58801157_58801306_58806447_58806517_58810196_58810392_58811726_58811835_58813932_58814072_58814153_58814330_58815686_58815783_58820430_58820626_58821536_58821648_58824241_58824390_58825889_58825940_58828444_58828584_58829049_58829199_58833044_58833200_58838238_58838399_58863241_58863363_58865180_58865336_58885907
79474	chr5	+	3348	6	NIC	ENSMUSG00000014956.16	novel	5962	8	NA	NA	-4	957	intron_retention	FALSE	canonical	0	0	junction_1	552.155050687757	38	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTTGTCACTGTTTTTGT	3070	False	NA	NA	False	NA	NA	NA	32616561	32651057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_32616752_32640769_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
79475	chr1	-	5565	8	NIC	ENSMUSG00000026135.18	novel	7473	9	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	16.630436812406	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGACTTCTTGAGTAGTA	NA	False	NA	NA	False	NA	NA	NA	74627129	74605841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74606507_74607709_74607816_74608837_74611743_74612697_74612876_74614938_74615764_74617281_74617447_74624542_74624857_74626722
79476	chr11	-	6974	34	FSM	ENSMUSG00000000804.15	ENSMUST00000108075.9	7053	34	84	-5	14	5	multi-exon	FALSE	canonical	3	28	junction_26	11.8228429036788	100	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTGTGATCCTGTTTT	7569	False	NA	NA	False	NA	NA	NA	85030780	84875262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84877410_84878094_84878188_84879159_84879585_84883278_84883568_84885211_84885404_84896633_84896755_84897818_84897906_84900784_84900970_84908455_84908668_84910590_84910703_84912981_84913134_84913556_84913732_84916344_84916519_84917601_84917708_84917926_84918066_84919886_84919962_84921308_84921391_84922894_84923050_84927347_84927466_84930026_84930168_84930820_84930997_84933313_84933507_84935535_84935639_84941212_84941275_84942016_84942101_84944473_84944537_84944759_84944876_84946591_84946700_84949953_84950086_84968090_84968251_84971956_84972076_84974614_84974721_84994724_84994853_85030536
79477	chr17	+	3739	9	NNC	ENSMUSG00000024301.11	novel	2631	11	NA	NA	0	-308	intron_retention	FALSE	non_canonical	0	0	junction_1	143.885371042368	58	98	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTATGTTAATCCTTT	NA	False	NA	NA	False	NA	NA	NA	27136146	27151249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27136260_27139774_27139906_27139993_27141698_27141878_27142277_27142982_27143763_27144415_27144707_27144799_27144874_27145193_27145270_27151077
79478	chr13	-	3271	12	NIC	ENSMUSG00000032745.19	novel	3694	13	NA	NA	116	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	340.23314806368	10	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	NA	False	NA	NA	NA	111626446	111562213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589906_111590031_111603384_111603505_111623956_111624905_111626251
79479	chrX	+	2209	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-38	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1667.3121753289	1	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTTTTCATTTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	100473302	100492186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483225_100485163_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100489777_100489835_100491199
79480	chrX	-	3628	11	NNC	ENSMUSG00000031134.17	novel	2139	10	NA	NA	-1	180	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	24.8265986393626	73	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGTGGTGTTGGGTTCT	NA	False	NA	NA	False	NA	NA	NA	56438397	56428709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_56429922_56430492_56430582_56431500_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
79481	chr11	+	2546	18	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-5	-225	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	614.47499745014	6	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGCTATATGACGCCAATC	NA	False	NA	NA	False	NA	NA	NA	72332197	72342369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338596_72342029
79482	chr18	+	2038	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	-1	30	-1	-30	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	2642	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAGTAATAAATTATTTG	NA	False	NA	NA	False	NA	NA	NA	53309386	53353907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
79483	chr10	-	2239	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	596.869713208381	6	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTGCTTCTGTTTGATCC	NA	False	NA	NA	False	NA	NA	NA	127358317	127352990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127355060_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
79484	chr7	-	5896	24	NNC	ENSMUSG00000030516.15	novel	6102	27	NA	NA	-12087	0	intron_retention	FALSE	non_canonical	0	0	junction_5	51.9807293069428	4	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTAGTTTGGTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	65004632	64945912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_64947416_64949417_64949562_64950813_64951032_64952491_64952967_64956117_64956207_64962441_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986418_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579
79485	chr4	-	4246	26	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	-127	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	120.494979148511	1	147	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGACTTGTCTTTCCTC	643	False	NA	NA	False	NA	NA	NA	41123661	41114428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119016_41119236_41119313_41119412_41119562_41119753_41119879_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123531_41123580
79486	chr4	+	4027	15	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	78065	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	231.871324713708	1	160	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130468781	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130468833_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490067_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
79487	chr11	-	706	1	Intergenic	novelGene_2270	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATGCTTACTTGAAACT	NA	False	NA	NA	False	NA	NA	NA	51883999	51883293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_51883300_51884000
79488	chr16	-	3762	12	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	0	64	intron_retention	FALSE	non_canonical	0	0	junction_2	589.885869336582	224	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACGTCATTTGATTTTG	9195	False	NA	NA	False	NA	NA	NA	91525496	91486349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487631_91489473_91489593_91489731_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
79489	chr3	+	6171	26	NNC	ENSMUSG00000027820.13	novel	3543	9	NA	NA	-67	2090	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	141.068414607948	2	115	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTGTGCTTTGCATTT	NA	False	NA	-58	True	NA	NA	NA	63148890	63291134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63148988_63150636_63150788_63158040_63158145_63197272_63197448_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
79490	chr14	+	2862	11	FSM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	-80	2	43	-2	multi-exon	FALSE	canonical	3	41	junction_10	479.473419492676	5	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGGCAGTTGGAAGAAT	8934	False	NA	NA	False	NA	NA	NA	55777765	55787279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55786112_55786411
79491	chr19	+	3938	3	ISM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	27	-1408	27	1408	intron_retention	FALSE	canonical	3	5418	junction_2	427.5	8	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAAATCCACCTGCCTCT	4087	False	NA	NA	False	NA	NA	NA	41900388	41908507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_41900626_41904043_41904319_41905081
79492	chrX	-	2069	1	ISM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	21934	0	21876	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	93234381	93232312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_93232300_93234400
79493	chr15	+	3896	2	Genic_Genomic	ENSMUSG00000033020.8	novel	1958	1	NA	NA	-3367	52662	multi-exon	FALSE	canonical	0	0	junction_1	0	14	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCACAGGTACCAGGCAT	1321	False	NA	NA	False	NA	NA	NA	79030639	79088636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_79034514_79088614
79494	chr8	-	4918	13	FSM	ENSMUSG00000036180.16	ENSMUST00000212478.2	3622	13	285	-1581	134	0	multi-exon	FALSE	canonical	3	316	junction_12	239.231916186412	376	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTCAACTGTATTGTTC	NA	False	NA	NA	False	NA	NA	NA	70448749	70359725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70362625_70364326_70364520_70364813_70364889_70365572_70365875_70367168_70367449_70368933_70369099_70369218_70369351_70370092_70370183_70370372_70370505_70370595_70370729_70388428_70388687_70403302_70403405_70448592
79495	chr3	-	1764	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	547.82397486603	8	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	NA	False	NA	NA	NA	98247240	98220485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235417_98235622_98235660_98240550_98240617_98241822_98241975_98247010
79496	chr10	+	14707	89	Intergenic	novelGene_3564	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	94	127	28	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCCATCTCGGAGCCG	5084	False	NA	NA	False	NA	NA	NA	127374032	127456833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_127374960_127375101_127375246_127375339_127375432_127375535_127375598_127375723_127375831_127376022_127376199_127376487_127376653_127376821_127376992_127377102_127377246_127377509_127377684_127378052_127378176_127378441_127378543_127378955_127379135_127380287_127380551_127381400_127381524_127381599_127381737_127381869_127382008_127382257_127382388_127382706_127382826_127384183_127384319_127384408_127384514_127385185_127385303_127385776_127385903_127386053_127386177_127386475_127386596_127386813_127386931_127387537_127387621_127388024_127388177_127388579_127388769_127389235_127389440_127389558_127389751_127390134_127390252_127390448_127390538_127390825_127391003_127391524_127391716_127391861_127392003_127392079_127392202_127392476_127392606_127392752_127392870_127393062_127393192_127393284_127393427_127393938_127394057_127394404_127394527_127394700_127394829_127394965_127395088_127395832_127396024_127396318_127396529_127399472_127399665_127402326_127402700_127403010_127403142_127403230_127403385_127404223_127404345_127404453_127404587_127404766_127404903_127405152_127405283_127407272_127407413_127407761_127407898_127408284_127408435_127408616_127408713_127408796_127408972_127409145_127409379_127409841_127409973_127410135_127410387_127410826_127410987_127411151_127411358_127412308_127412504_127412676_127412925_127413856_127414058_127414400_127414584_127417590_127417759_127419249_127419331_127419690_127419808_127420181_127420308_127420481_127420625_127423938_127424062_127424274_127424480_127425423_127425649_127426426_127426609_127427771_127428017_127429227_127429366_127429648_127429842_127430820_127431043_127431154_127431317_127441277_127441542_127441654_127441784_127443814_127443935_127446211_127446348_127448523_127448649_127456486
79497	chr5	-	4380	12	NNC	ENSMUSG00000029405.17	novel	1884	12	NA	NA	-99	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	590.518850162037	2	210	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTATGTCCCTAATTT	NA	False	NA	NA	False	NA	NA	NA	92231677	92200018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92202913_92203242_92203362_92204127_92204253_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
79498	chr9	-	3723	13	NIC	ENSMUSG00000032376.13	novel	3662	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_12	38.6079834864357	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTGGTTGAGTGTCGT	NA	False	NA	NA	False	NA	NA	NA	66500330	66423515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66500065
79499	chrX	+	887	3	ISM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	1354	0	-274	0	3prime_fragment	FALSE	canonical	3	11014	junction_2	384.5	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36060657	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_36060983_36061388_36061530_36062039
79500	chr3	+	5170	11	Antisense	novelGene_ENSMUSG00000055436.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	102	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGCAAAAAGTTAATTAC	NA	False	NA	NA	False	NA	NA	NA	157717262	157732147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157717841_157717946_157718084_157718414_157718513_157719588_157719679_157721958_157722090_157723445_157723529_157724723_157724836_157724948_157725077_157727012_157727063_157727596_157727690_157728477
79501	chr18	-	1938	14	ISM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	3024	704	240	149	3prime_fragment	FALSE	canonical	3	5978	junction_5	262.639514911407	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTCTGTCACTAGCCT	3223	False	NA	NA	False	NA	NA	NA	35084386	35071170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276
79502	chr11	-	4377	23	Antisense	novelGene_ENSMUSG00000034931.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	230	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGGAAGTTCCCACAGAC	NA	False	NA	NA	False	NA	NA	NA	101658184	101623727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_101624013_101624979_101625068_101626203_101626275_101626632_101626720_101628481_101628591_101628953_101629383_101630524_101630673_101631486_101631691_101632324_101632413_101633899_101633998_101635929_101636079_101640709_101640890_101641700_101641897_101642834_101643027_101643112_101643320_101643971_101644154_101645555_101645694_101648411_101648573_101653032_101653172_101654721_101654850_101654968_101655166_101655601_101655782_101657463
79503	chr13	-	2923	13	NNC	ENSMUSG00000041747.4	novel	4120	13	NA	NA	89	-1084	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	122.425118836872	1	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGCGTTTCAAGCGC	NA	False	NA	NA	False	NA	NA	NA	98399432	98384436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395877_98395975_98397306_98397479_98399382
79504	chr15	-	3088	5	Antisense	novelGene_ENSMUSG00000116024.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	440	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCTAACTCCGCCCCCC	NA	False	NA	NA	False	NA	NA	NA	76776842	76763439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76763552_76764936_76764981_76765309_76765437_76772428_76772596_76774204
79505	chr4	+	3078	7	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	410	4	NA	NA	25	-2	multi-exon	TRUE	non_canonical	0	0	junction_5	191.567003073772	2	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGACTTGGCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	146033939	146135323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034017_146094927_146095022_146126784_146126867_146129876_146130004_146131535_146132073_146132492_146133167_146133836
79506	chr4	+	3686	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	187.01080182706	3	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGACTTGGCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	145397261	145431009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474_145429485_145429795
79507	chr4	+	3384	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	3	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	181.304682110259	5	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTTTAACAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	146093396	146135309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535_146132060_146132143_146132850_146132934_146133298_146133975
79508	chr4	+	3243	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-33	3	multi-exon	TRUE	non_canonical	0	0	junction_1	15.538339679644	4	75	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	147056399	147145254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056568_147067150_147067255_147071090_147071218_147073383_147074257_147074423_147074807_147143666
79509	chr4	+	3898	7	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	-37381	-69	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	140.844772710953	4	120	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCCCTTATGCTCTGTCA	NA	False	NA	NA	False	NA	NA	NA	145359873	145430942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145360312_145399301_145399395_145422720_145422798_145425786_145425941_145427474_145428318_145428486_145429413_145429575
79510	chr4	+	4184	5	NNC	ENSMUSG00000066007.16	novel	724	2	NA	NA	-55130	-1	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	214.304106353565	1	152	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146038263	146135324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146094927_146095022_146126781_146126867_146129876_146130004_146131535
79511	chr4	+	3576	8	Intergenic	novelGene_2094	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	163.415958554249	1	246	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGACTTGGCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	146426566	146806006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426698_146428065_146428160_146603539_146603648_146800390_146800518_146802050_146802609_146803029_146804166_146804249_146804462_146804796
79512	chr2	-	3194	2	Antisense	novelGene_ENSMUSG00000096484.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCATTCATTCTTCAAA	NA	False	NA	NA	False	NA	NA	NA	83806538	83802669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_83802703_83803377
79513	chr4	-	1945	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-2	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	23	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAATAACCATAGATAAAAGA	2490	False	NA	NA	False	NA	NA	NA	129229165	129203182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129203843_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
79514	chr4	-	2185	10	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	0	63	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	264.119501572889	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGGAAGAAGAGTGGGATCC	6764	False	NA	NA	False	NA	NA	NA	126096463	126060777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126072167_126072351_126073704_126074608_126080227_126080382_126096362
79515	chr15	+	5709	23	FSM	ENSMUSG00000022390.12	ENSMUST00000109554.3	5740	23	31	0	31	0	multi-exon	TRUE	canonical	3	112	junction_21	52.4698457282257	165	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTTAGCCTTTGTTCT	1979	False	NA	NA	False	NA	NA	NA	81629288	81680461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184_81653383_81655938_81656098_81656628_81656710_81657486_81657544_81660006_81660050_81660478_81660673_81660981_81661304_81662073_81662133_81662810_81662911_81663309_81663472_81664604_81664811_81666159_81666261_81667225_81667408_81670082_81670169_81676132_81676267_81676430_81676537_81676663_81676773_81676980_81677115_81677220_81677385_81677701
79516	chr3	-	8480	17	FSM	ENSMUSG00000027782.11	ENSMUST00000029353.9	8819	17	335	4	-148	-4	multi-exon	FALSE	canonical	3	213	junction_6	26.0353575690829	190	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTCACATGACTACCTAA	NA	False	NA	NA	False	NA	NA	NA	69034111	68974485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_68981521_68984082_68984178_68986709_68986873_68988491_68988564_68991382_68991488_68993019_68993149_68994789_68994922_68997108_68997154_68997240_68997411_69000142_69000230_69001985_69002072_69002852_69002949_69008384_69008438_69008534_69008565_69008673_69008764_69009536_69009582_69034064
79517	chr7	-	2769	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	3	-83	3	83	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	619	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATAGTGTGTTTACTGTA	NA	False	NA	NA	False	NA	NA	NA	119320018	119314232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
79518	chr4	+	3322	11	NNC	ENSMUSG00000028252.21	novel	3365	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	144.968410352049	1	166	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	7	True	NA	NA	False	NA	NA	NA	21727766	21750546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740652_21742582_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
79520	chr5	+	3664	2	Antisense	novelGene_ENSMUSG00000047215.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGAACGTCTTTCGTCAT	3014	False	NA	NA	False	NA	NA	NA	65544967	65548738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_65547016_65547122
79521	chr6	-	3270	6	NIC	ENSMUSG00000030127.16	novel	1328	8	NA	NA	2	-53	intron_retention	FALSE	canonical	3	1332	junction_5	196.892457956114	23	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGATTTGTTGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	124942473	124935428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936914_124937053_124937160_124938120_124939410_124939584_124939661_124941686_124941892_124942364
79522	chr16	-	6079	13	ISM	ENSMUSG00000062203.16	ENSMUST00000080030.14	2898	15	13523	-3805	-2866	3045	3prime_fragment	FALSE	canonical	3	773	junction_12	236.714842514504	541	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAAATGGCATGTGCCTC	7603	False	NA	NA	False	NA	NA	NA	11058550	11034110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_11038744_11040448_11040618_11041075_11041166_11042283_11042458_11045978_11046060_11047072_11047167_11048373_11048515_11048700_11048856_11050395_11050577_11053229_11053308_11055394_11055429_11056735_11056964_11058529
79523	chr1	-	1972	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	96	-17	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	3089.669845061	6	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATCCTAAACTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	86286990	86278234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278242_86278605_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285145_86285842_86285935_86286927
79524	chr4	-	5198	19	FSM	ENSMUSG00000040359.15	ENSMUST00000142949.8	5189	19	-11	2	-8	-2	multi-exon	FALSE	canonical	3	78	junction_1	37.6058588159339	1	78	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTATGTTATACAGTCT	5	True	NA	NA	False	NA	NA	NA	25281771	25248601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_25249970_25250425_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
79525	chr9	-	1259	4	FSM	ENSMUSG00000000171.6	ENSMUST00000000175.6	1231	4	-18	-10	-18	10	multi-exon	FALSE	canonical	3	1351	junction_3	46.783187863448	3990	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATACATTGTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	50515130	50507646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50508551_50510060_50510206_50511847_50511965_50515037
79526	chr1	-	3502	6	FSM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	186	3375	6	1497	multi-exon	FALSE	canonical	0	0	junction_5	408.588007655633	2041	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTGAGAAATATTGCCT	NA	False	NA	NA	False	NA	NA	NA	118238960	118225882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
79527	chr14	+	4104	9	NNC	ENSMUSG00000022035.7	novel	2230	9	NA	NA	2	1875	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.8850861132448	762	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCCGTGTCTATCTCAAA	NA	False	NA	NA	False	NA	NA	NA	66074752	66105931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094141_66094346_66097618_66097665_66102578
79528	chr1	+	940	7	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-10	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10636.8829707454	26590	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454518	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456407_86456579_86456894_86456967_86457177_86457275_86457452_86457527_86457686_86457746_86458106
79529	chr1	-	3476	12	NIC	ENSMUSG00000026019.16	novel	10012	13	NA	NA	17	-725	intron_retention	FALSE	canonical	3	863	junction_11	58.1320810136297	20	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTCTTTTTGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	60137050	60116751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
79530	chr1	+	2590	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	-3	2	-3	-2	multi-exon	FALSE	canonical	3	163	junction_1	41.5	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAACCTGGCTTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	155916659	155929480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_155916749_155916820_155916881_155927039
79531	chr2	+	167	4	NNC	ENSMUSG00000039001.13	novel	394	6	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2751.56989533046	1	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAAGTCTGCTTTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	179899209	179900232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_179899220_179899811_179899851_179900022_179900079_179900170
79532	chr11	+	3498	9	NIC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	21	58	intron_retention	FALSE	canonical	3	2673	junction_3	114.06241438353	3	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTGTATATGTTGTT	NA	False	NA	NA	False	NA	NA	NA	107370330	107388617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107386592_107388349
79533	chr13	-	453	1	Intergenic	novelGene_1357	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGTTTTTATCATACT	NA	False	NA	NA	False	NA	NA	NA	45023500	45023047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_45023000_45023500
79534	chr1	-	4054	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	-315	-98	191	98	multi-exon	FALSE	canonical	3	220	junction_1	0	354	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAATGAGTGTGTATCTG	365	False	NA	NA	False	NA	NA	NA	52992318	52961384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_52964894_52991773
79535	chr2	-	2935	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-11	-18	at_least_one_novel_splicesite	FALSE	non_canonical	2	260	junction_9	5267.15130681556	44	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCAGTGCCTCCTGTGTAA	3725	False	NA	NA	False	NA	NA	NA	154734762	154713355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734028
79536	chr3	+	1323	4	NNC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	879	0	intron_retention	FALSE	canonical	0	0	junction_3	2542.77813948969	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTGGTTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	121245532	121251856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_121245649_121248595_121248743_121250730_121251458_121251523
79540	chr5	+	8230	6	FSM	ENSMUSG00000029729.13	ENSMUST00000019660.11	8261	6	30	1	-6	-1	multi-exon	FALSE	canonical	2	7	junction_4	2.63818119165458	106	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTTTTAAATCCTCATT	NA	False	NA	NA	False	NA	NA	NA	138083375	138106083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138083494_138091181_138091695_138092253_138092402_138095328_138095421_138095714_138095842_138098851
79541	chr11	-	1077	9	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9179.71118060775	2	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	NA	False	NA	NA	NA	33113077	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106700_33106986_33107049_33109933_33109996_33110333_33110435_33110827_33110922_33111105_33111274_33112921
79542	chr15	+	5830	2	Antisense	novelGene_ENSMUSG00000116295.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTAACCCCCTGAGTTCC	NA	False	NA	NA	False	NA	NA	NA	97058452	97064839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_97059279_97059835
79543	chr9	-	673	2	ISM	ENSMUSG00000056167.9	ENSMUST00000217148.2	3466	16	48113	139	48010	-139	3prime_fragment	FALSE	canonical	3	568	junction_1	0	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTTGTTGTTGTTGGTT	NA	False	NA	NA	False	NA	NA	NA	114421021	114415172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_114415408_114420583
79545	chr5	+	4156	1	Antisense	novelGene_ENSMUSG00000001467.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTCTCTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	4132113	4136269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_4132100_4136300
79546	chr2	+	2613	27	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	39	-5591	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	295.574140420313	1	78	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACAGGCCACTGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	146854954	146905229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869231_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878585_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152
79547	chrX	+	3622	17	Intergenic	novelGene_4078	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	105	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCAGCTCTTTGCTCCG	NA	False	NA	NA	False	NA	NA	NA	149766136	149800290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_149767592_149768815_149769185_149770835_149771058_149774131_149774262_149776646_149776784_149777008_149777150_149777243_149777419_149778006_149778096_149780179_149780327_149782691_149782800_149783598_149783737_149784034_149784119_149785171_149785285_149786527_149786638_149787240_149787282_149797016_149797088_149800198
79548	chr15	+	6528	1	Antisense	novelGene_ENSMUSG00000118671.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGACTCCTGTGTCTCC	4035	False	NA	NA	False	NA	NA	NA	75973334	75979862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_75973300_75979900
79550	chr9	-	4144	15	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	12	12	intron_retention	FALSE	canonical	3	517	junction_5	118.483982384256	2	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGCTATTTGACTTAGAA	NA	False	NA	NA	False	NA	NA	NA	108526556	108481872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
79551	chr6	-	3489	7	NNC	ENSMUSG00000029998.15	novel	4295	6	NA	NA	14	-665	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.9992063447071	4	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAAGAATTGTAACAATTG	NA	False	NA	NA	False	NA	NA	NA	86374087	86363652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_86365228_86365319_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895_86373103_86373954
79552	chr3	-	2727	11	NIC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	39	0	intron_retention	FALSE	canonical	3	1070	junction_1	251.900774115524	9	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	NA	False	NA	NA	NA	98247267	98220485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
79553	chr9	+	3087	18	Antisense	novelGene_ENSMUSG00000111069.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	57	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACACCCAGTCGGCTCTGC	NA	False	NA	NA	False	NA	NA	NA	22263193	22300411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_22263420_22264051_22264138_22264628_22264674_22267346_22267477_22269417_22269601_22269909_22270044_22271704_22271854_22272111_22272264_22273981_22274221_22275288_22275395_22279679_22279808_22283450_22283559_22284435_22284627_22286221_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
79554	chr10	-	3012	27	NNC	ENSMUSG00000052798.14	novel	3114	28	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	279.790985491188	1	142	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGTTTTCTCTTATG	NA	False	NA	NA	False	NA	NA	NA	117628592	117586525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623809_117625878_117625966_117626371_117626450_117628498
79555	chr13	+	677	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-13	274	-13	-274	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCACAACCAGCGCAGACT	7949	False	NA	NA	False	NA	NA	NA	74554514	74555191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555200
79556	chr13	+	717	3	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-13	-30	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAACAAAAAAACAA	7949	False	NA	NA	False	NA	NA	NA	74554514	74555435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554731_74554841_74555266_74555358
79557	chr11	+	616	3	Genic_Genomic	ENSMUSG00000081251.2	novel	551	1	NA	NA	-207	173	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTCTAAAATTATTTTA	NA	False	NA	NA	False	NA	NA	NA	45719938	45720869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_45720220_45720430_45720688_45720791
79558	chr7	-	747	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	1	1	intron_retention	FALSE	non_canonical	0	0	junction_3	30199.1782338527	5	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTCTGTACCTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	45109262	45107529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107708_45107958_45108085_45108507_45108642_45108953
79559	chr13	+	572	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-17	55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTCTCAAGCCACTAGGC	7945	False	NA	NA	False	NA	NA	NA	74554510	74555347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554662_74554926
79560	chr4	-	3389	24	NIC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	27	-803	intron_retention	FALSE	canonical	3	748	junction_12	91.3592174674077	2	66	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGACCCCTTTCCAGCAGGC	264	False	NA	NA	False	NA	NA	NA	41275089	41195995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
79561	chr10	+	4774	28	NNC	ENSMUSG00000040675.18	novel	3669	28	NA	NA	-5	-5079	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	88.2256428730143	25	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATACACCTAAATAAATTT	NA	False	NA	NA	False	NA	NA	NA	3923112	4101032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098383_4099618
79562	chr2	+	1892	1	Genic_Genomic	ENSMUSG00000001998.16	novel	NA	NA	NA	NA	-5240	1138	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTCTCATCTTCTAGGC	NA	False	NA	NA	False	NA	NA	NA	126885990	126887882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_126886000_126887900
79563	chr11	+	3037	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	17	9	17	-9	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	368	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTTCTGGGTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	95304940	95384223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
79564	chr9	-	4029	11	NIC	ENSMUSG00000010205.12	novel	3470	13	NA	NA	26	-105	intron_retention	FALSE	canonical	3	427	junction_5	37.5367819611644	6	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACCCACTCCAGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	21003278	20985558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
79565	chr3	-	2979	19	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	12265	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	306.012869897999	1	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAAAAGCCTCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	104712405	104702155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702436_104702709_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219
79566	chr17	-	2298	16	NNC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	243.164270036168	18	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	NA	False	NA	NA	NA	36280656	36267710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271740_36274826_36274939_36275145_36275233_36275968_36276016_36280537
79569	chr10	+	3381	8	NIC	ENSMUSG00000063334.17	novel	3451	9	NA	NA	-8	-799	intron_retention	FALSE	canonical	3	346	junction_4	33.8502102607041	5	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATTAAAGTATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	111808689	111822000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813304_111814995_111815963_111818705_111818784_111818868_111818963_111820443
79570	chr13	-	5903	12	NIC	ENSMUSG00000032621.9	novel	3934	12	NA	NA	99	406	intron_retention	FALSE	canonical	3	14	junction_10	78.3779780168928	29	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTTCAATATATACAG	10018	False	NA	NA	False	NA	NA	NA	103911015	103879712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_103880225_103881292_103881438_103885266_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103900803_103900928_103905824_103905959_103910806
79571	chr7	-	2064	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	91	16	1	-16	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	24	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCCTTTTGTCTCACTT	NA	False	NA	NA	False	NA	NA	NA	117728794	117718129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
79572	chr10	+	2714	15	Antisense	novelGene_ENSMUSG00000020076.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	682	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAACTCTCCCAGAGAGT	NA	False	NA	NA	False	NA	NA	NA	62451673	62487056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62452298_62455365_62455408_62457166_62457302_62460545_62460709_62460925_62460997_62461940_62462061_62463298_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476638_62478550_62478736_62479077_62479154_62482694_62482983_62486805
79573	chr10	-	5728	4	NNC	ENSMUSG00000020091.16	novel	5784	3	NA	NA	-132	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	95.48123724935	442	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGGTGGTTTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	61288572	61264269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_61269608_61270696_61270883_61288180_61288370_61288557
79574	chr12	-	2119	4	NIC	ENSMUSG00000076432.14	novel	2110	5	NA	NA	149	-4	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	1597.66830099367	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCCTTGGCTGGTATTA	NA	False	NA	NA	False	NA	NA	NA	21467288	21440075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_21441417_21446282_21446447_21448241_21448366_21466798
79575	chr1	+	8085	42	NIC	ENSMUSG00000026131.21	novel	16340	84	NA	NA	-7614	0	combination_of_known_junctions	TRUE	canonical	3	43	junction_1	35.6811679542503	146	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTATGGAATACTTGGTT	NA	False	NA	NA	False	NA	NA	NA	34268062	34347731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_34268328_34281699_34281862_34283424_34283596_34286729_34286897_34288559_34288720_34288884_34289212_34289690_34289776_34290776_34291019_34291891_34292099_34295312_34295433_34295622_34295731_34296802_34297022_34299244_34299449_34301100_34301333_34302344_34302572_34303605_34303729_34303830_34303933_34305937_34306040_34307309_34307484_34307815_34307972_34309908_34310107_34310435_34310565_34313248_34313420_34314285_34314442_34314753_34314961_34317100_34317221_34321503_34321674_34323339_34323500_34326267_34326463_34326971_34327101_34328604_34328749_34329439_34329629_34330867_34330998_34332400_34332565_34333464_34333628_34334234_34334390_34334542_34334618_34338801_34338920_34341910_34342114_34342501_34342613_34345608_34345733_34346410
79576	chr13	-	2308	9	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	-20	-6794	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	334.416072243844	26	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGCTGTATAATCTGTTT	5886	False	NA	NA	False	NA	NA	NA	38178153	38162170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38162344_38162534_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
79577	chr11	-	3847	16	NNC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	82	187	intron_retention	FALSE	canonical	0	0	junction_14	153.843412454208	3	91	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTTCAATCCCAGCACTC	1212	False	NA	NA	False	NA	NA	NA	107080096	107057301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107059216_107061917_107062011_107062440_107062512_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077596_107077749_107079942
79578	chr11	-	3170	10	FSM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	16	-95	16	95	multi-exon	FALSE	canonical	3	69	junction_1	16.3435342295084	411	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAACATTGGTTGTCATGC	1349	False	NA	NA	False	NA	NA	NA	61157995	61135583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
79579	chr2	-	4986	4	NNC	ENSMUSG00000027547.18	novel	5073	4	NA	NA	-86	-8	intron_retention	FALSE	canonical	0	0	junction_2	289.167771371569	16	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATGAGGCGGGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	168607252	168590259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168592381_168594373_168594651_168596371_168598721_168607013
79580	chr2	+	3450	8	NNC	ENSMUSG00000000827.19	novel	3603	8	NA	NA	-17	337	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	403.176114857808	36	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCACCCCTTGGCCATT	NA	False	NA	NA	False	NA	NA	NA	181138917	181160096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872_181159595_181160064
79581	chr12	+	2021	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	107	-61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2633.96842318221	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTTGAACTTTCATG	NA	False	NA	NA	False	NA	NA	NA	24758346	24764084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758452_24758572_24758634_24758934_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
79582	chr11	-	5467	15	FSM	ENSMUSG00000020173.18	ENSMUST00000046755.14	5615	15	124	24	26	-22	multi-exon	FALSE	canonical	3	223	junction_7	88.5788303358848	272	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATGCAAATCCAATGCT	NA	False	NA	NA	False	NA	NA	NA	12414833	12186699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_12188060_12199649_12199914_12201022_12201143_12203088_12204972_12206144_12206243_12216855_12217145_12256957_12257129_12259613_12259753_12293743_12293918_12315104_12315180_12319593_12319692_12325809_12326039_12328148_12328360_12336562_12336767_12414681
79583	chrX	+	3269	21	NIC	ENSMUSG00000031060.17	novel	3172	23	NA	NA	-12	1	intron_retention	FALSE	canonical	3	25	junction_4	95.2408000806377	372	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTCTACTTTCTC	543	False	NA	NA	False	NA	NA	NA	20484009	20517128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
79584	chr9	-	7686	56	FSM	ENSMUSG00000032560.15	ENSMUST00000035170.13	8012	56	5	321	5	-321	multi-exon	FALSE	canonical	3	149	junction_37	31.3582656798217	228	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGATATGTATGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	104140124	104028801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_104029623_104034012_104034113_104037677_104037822_104039471_104039613_104039853_104040034_104042158_104042333_104042715_104042759_104042892_104043063_104044169_104044283_104044612_104044688_104047913_104048014_104049719_104049812_104051547_104051726_104052845_104052963_104053856_104053971_104056000_104056169_104057267_104057448_104058197_104058318_104059226_104059302_104059703_104059889_104061781_104061918_104063909_104063989_104064746_104064863_104066242_104066445_104067519_104067675_104069304_104069351_104069812_104069968_104073221_104073307_104074357_104074561_104075828_104075934_104077635_104077738_104079086_104079150_104080370_104080531_104080613_104080718_104084951_104085106_104086503_104086587_104089959_104090104_104091015_104091112_104091321_104091398_104092844_104092967_104094910_104094968_104095725_104095882_104097069_104097178_104098602_104098703_104105621_104105792_104105879_104105960_104106073_104106241_104107208_104107301_104107839_104107936_104108029_104108237_104110732_104110934_104114334_104114377_104114775_104114926_104115663_104115740_104123958_104124040_104139897
79585	chr6	+	4117	23	FSM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	-39	-1026	-23	-8	multi-exon	FALSE	canonical	3	110	junction_1	30.2788691558217	410	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATTATTTTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	90527747	90577177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
79586	chr15	+	6838	30	NIC	ENSMUSG00000055024.13	novel	9566	31	NA	NA	264	1392	combination_of_known_junctions	FALSE	canonical	3	7	junction_7	19.689141849701	105	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGCACATGCTCCCAAA	3996	False	NA	NA	False	NA	NA	NA	81470684	81534775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81470924_81485108_81485747_81492397_81492575_81494555_81494818_81495610_81495725_81497370_81497617_81500232_81500327_81504200_81504319_81505262_81505438_81507648_81507727_81508725_81508836_81510538_81510677_81511303_81511736_81512493_81512674_81512793_81512939_81514201_81514321_81515814_81516055_81516624_81516714_81518204_81518286_81520378_81520436_81520966_81521045_81523180_81523249_81523941_81524093_81524195_81524343_81524640_81524755_81525460_81525627_81527227_81527393_81529075_81529238_81532539_81532822_81533002
79587	chr11	+	1424	3	ISM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	-1	120	-1	-120	intron_retention	FALSE	canonical	3	5273	junction_1	83	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGGCCCAAACCCCACTT	NA	False	NA	NA	False	NA	NA	NA	51510560	51514421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_51510805_51510908_51510979_51513311
79588	chr7	-	2294	5	FSM	ENSMUSG00000070436.13	ENSMUST00000169437.9	2274	5	-30	10	-30	3	multi-exon	FALSE	canonical	3	46	junction_4	667.492462504259	128	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTCTAAGACAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	99002351	98994592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088
79589	chr8	-	1373	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	5	317	5	-309	multi-exon	FALSE	canonical	3	249	junction_1	0	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCGATCTGATAGAGGGG	NA	False	NA	NA	False	NA	NA	NA	79235522	79232214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_79233493_79235427
79590	chr1	+	5334	17	ISM	ENSMUSG00000042207.18	ENSMUST00000112198.3	5413	26	42354	-1361	14569	1361	3prime_fragment	FALSE	canonical	3	725	junction_7	69.5507627114901	436	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTGGTCTGCAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	134530283	134560621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134530347_134532179_134532362_134533450_134533614_134535425_134535546_134536602_134536798_134540925_134541108_134541624_134541750_134543655_134543807_134543926_134544042_134545429_134545786_134547297_134547437_134548580_134548761_134549672_134549832_134552448_134552935_134555002_134555115_134556335_134556491_134558170
79591	chr9	+	571	5	FSM	ENSMUSG00000036781.14	ENSMUST00000127896.8	575	5	6	-2	6	0	multi-exon	FALSE	canonical	3	168	junction_3	5596.89320069626	731	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTCCCTCTGCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	66853378	66856798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855920_66856000_66856610
79592	chr1	-	3008	5	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	14	-7	combination_of_known_junctions	FALSE	canonical	3	119	junction_3	852.002494127805	32	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCACGAGCTTTGGTTC	2324	False	NA	NA	False	NA	NA	NA	93729642	93720304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93728633_93729419
79593	chr2	-	5919	16	NIC	ENSMUSG00000038914.16	novel	8723	16	NA	NA	-101	-2605	combination_of_known_junctions	FALSE	canonical	3	75	junction_10	44.2520056042661	155	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGAGGAGCACCAGCCCA	NA	False	NA	NA	False	NA	NA	NA	180351893	180302361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_180304377_180311183_180311380_180312057_180312148_180312653_180312808_180313184_180313708_180314075_180314212_180315023_180315129_180315267_180315385_180316483_180316644_180316760_180317221_180325601_180325822_180326756_180326970_180329268_180329591_180330616_180331449_180333656_180333842_180351702
79594	chr16	-	4710	15	NNC	ENSMUSG00000022536.15	novel	3280	16	NA	NA	-3	4	intron_retention	FALSE	non_canonical	0	0	junction_1	364.738150413892	5	79	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTATCATTGTACCCA	8113	False	NA	NA	False	NA	NA	NA	4867724	4831768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_4832597_4833122_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597
79595	chr13	-	5647	8	NIC	ENSMUSG00000034928.17	novel	3941	11	NA	NA	1074	3	intron_retention	FALSE	canonical	3	393	junction_6	112.712565621494	6	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCCAAGCTGCCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	54833992	54827219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830764_54830855_54831030_54831407_54831576_54831773
79596	chr15	-	5627	28	NNC	ENSMUSG00000022360.9	novel	5684	28	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	96.0099589027347	3	61	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTCTAGTTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	57998490	57957439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_57958968_57959972_57960102_57960654_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989483_57989944_57990111_57991604_57991652_57995588_57995738_57998202
79597	chrX	+	2369	7	NIC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	1779	-15	intron_retention	FALSE	canonical	3	747	junction_2	58.4648517392193	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCCACATGTTGGAGCTGG	159	False	NA	NA	False	NA	NA	NA	73358510	73363725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73359179_73361035_73361113_73361242_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
79598	chr18	-	3586	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	339.479837398335	1	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATATATTTTGTGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	35065066	35035842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047110_35064626_35064726_35064886
79599	chr14	-	3122	23	FSM	ENSMUSG00000025557.11	ENSMUST00000088386.8	3121	23	-5	4	-5	-4	multi-exon	FALSE	canonical	3	25	junction_3	5.65119017669934	258	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAGAATATGTGTTTGT	3133	False	NA	NA	False	NA	NA	NA	121742669	121697036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_121698186_121699878_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
79600	chr7	-	12712	45	ISM	ENSMUSG00000030655.16	ENSMUST00000179331.9	12147	61	26801	-2732	6122	-7	3prime_fragment	TRUE	canonical	3	32	junction_39	26.1867893007963	228	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATAACAGTATCTAAGCT	NA	False	NA	NA	False	NA	NA	NA	117785392	117730537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_117734842_117735908_117736016_117736096_117736277_117738635_117738743_117738897_117739110_117739652_117739881_117740532_117740713_117740942_117741096_117742480_117742616_117744553_117745024_117745190_117745381_117745473_117745625_117747956_117748184_117751500_117751736_117751899_117752173_117753394_117753675_117753800_117753974_117755148_117755340_117755739_117755959_117756082_117756193_117756277_117756417_117757216_117757466_117758813_117759044_117759384_117759632_117762374_117762598_117765192_117765348_117765586_117765805_117766344_117766507_117767035_117767214_117767316_117767548_117767830_117767970_117768080_117768226_117770908_117771194_117772276_117772526_117776060_117776182_117777587_117777748_117777975_117778124_117779594_117779705_117781596_117781799_117781966_117782110_117782961_117783117_117783695_117783861_117784049_117784247_117784589_117784790_117785256
79601	chr6	-	2441	4	FSM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	37	3595	-25	1718	multi-exon	FALSE	canonical	3	811	junction_2	13.9124245031395	3526	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAGGGGTTCAGGCCACA	NA	False	NA	NA	False	NA	NA	NA	92160977	92150100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_92152190_92152689_92152778_92155690_92155798_92160820
79602	chr6	+	3557	28	NNC	ENSMUSG00000001376.18	novel	3788	28	NA	NA	-9	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	67.500342934657	1	194	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTACCAGGTGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	3498394	3603308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3524067_3524176_3532157_3532201_3532978_3533058_3533471_3533571_3536891_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567846_3570995_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594901_3598471_3598594_3600127_3600318_3602659
79603	chr1	-	3117	8	NNC	ENSMUSG00000026484.14	novel	3201	8	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	244.038889507055	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGTGAAGTTATTAGATG	NA	False	NA	NA	False	NA	NA	NA	151376560	151345162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151359481_151359617_151376495
79604	chr9	-	1951	5	NIC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	8	0	intron_retention	FALSE	canonical	3	3873	junction_2	307.597443910056	45	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775154	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110769888_110771396_110771713_110772219_110772322_110773258_110773312_110774891
79605	chr17	+	3056	8	Intergenic	novelGene_127	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	274	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGTCCAGGGATGAGATG	NA	False	NA	NA	False	NA	NA	NA	32163674	32253603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_32165786_32206321_32206426_32226649_32226768_32230149_32230282_32232290_32232441_32241738_32241844_32252234_32252386_32253418
79606	chr14	+	2506	8	NIC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	-10	-7	intron_retention	FALSE	canonical	3	2317	junction_5	168.496714677595	68	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCAATGAAGTCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	14296781	14303770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14300065_14300336_14300429_14302918_14303061_14303291
79607	chr6	+	2626	13	NNC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	526.714897580592	18	31	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	71808353	71852238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_71808500_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840259_71845551_71845788_71848410_71848543_71849777_71849908_71851300
79609	chr5	+	2403	7	NIC	ENSMUSG00000029131.15	novel	1605	8	NA	NA	-4	934	combination_of_known_splicesites	FALSE	canonical	3	27	junction_1	707.616755187596	6	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTGCAGCCTTCTT	4591	False	NA	NA	False	NA	NA	NA	29940982	29973035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_29941115_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
79610	chr17	-	4925	5	NNC	ENSMUSG00000095325.4	novel	754	5	NA	NA	18	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	70.5916956872407	746	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACATTCTGTTTCCAGTT	NA	False	NA	NA	False	NA	NA	NA	33110598	33098198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33098579_33098966_33103140_33104676_33104738_33104930_33105058_33110414
79611	chr6	+	3160	22	NNC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	108	-4	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	133.679601389533	5	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTGTATATTCCCATTG	NA	False	NA	NA	False	NA	NA	NA	47430945	47503069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_47431113_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
79612	chr3	+	1887	17	NNC	ENSMUSG00000028034.16	novel	2552	20	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	576.12628484886	71	18	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	NA	False	NA	NA	NA	151916116	151938409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925781_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927729_151931716_151931819_151933805_151933883_151937513_151937660_151938031
79613	chr6	-	1703	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	161	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2858.84094695735	1	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAATGGCTTTTAAGTGT	8916	False	NA	NA	False	NA	NA	NA	122719478	122706728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712412_122712480_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
79615	chr9	+	4110	30	ISM	ENSMUSG00000036768.7	ENSMUST00000040717.7	4858	35	39	6730	-1	-2521	5prime_fragment	FALSE	canonical	3	157	junction_12	27.1815143171007	3	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTACTATCTATAACTAAG	NA	False	NA	NA	False	NA	NA	NA	122780149	122841068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910_122817089_122820150_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825462_122826846_122827013_122828239_122828391_122828579_122828666_122830109_122830180_122831099_122831187_122832634_122832740_122833635_122833759_122836378_122836526_122838381_122838484_122838824_122838990_122840592
79616	chr7	+	3987	20	FSM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	-24	-353	3	353	multi-exon	FALSE	canonical	3	73	junction_1	22.1664566531058	203	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACAGAGTGCCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	82297824	82427413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
79617	chr11	+	2987	20	NNC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	60	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	108.614467236528	5	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGTTCTCACGTCACC	NA	False	NA	NA	False	NA	NA	NA	119158913	119176275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119159049_119161353_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
79618	chrX	+	2279	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	763	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1143.11915826829	1	70	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100474103	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488363_100488397_100488900_100488941_100489724_100489835_100491199
79619	chr5	+	3927	4	FSM	ENSMUSG00000066613.15	ENSMUST00000112540.8	2081	4	11	-1857	0	1857	multi-exon	FALSE	canonical	3	131	junction_3	47.4856703531591	120	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATATAGTGTTACTGGG	8381	False	NA	NA	False	NA	NA	NA	110144397	110160134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110144500_110154809_110154937_110155121_110155183_110156497
79620	chr5	+	3646	5	Intergenic	novelGene_806	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	9.67923034130297	12	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTACCTTTTCATTGTGTT	NA	False	NA	NA	False	NA	NA	NA	110014610	110032890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110014679_110017351_110017480_110027935_110028063_110028252_110028314_110029628
79621	chr10	-	5681	23	Antisense	novelGene_ENSMUSG00000019907.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	202	29	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGCGTAACTTCGCGAGA	NA	False	NA	NA	False	NA	NA	NA	108115612	107997960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_107998500_108034694_108034825_108050248_108050365_108066294_108066458_108069859_108070004_108075964_108076040_108076638_108076729_108076981_108077138_108078864_108078989_108085292_108085510_108086772_108086868_108087698_108087804_108089183_108089357_108095615_108095705_108096693_108096896_108097103_108097286_108098178_108098293_108100563_108100638_108104424_108104567_108105112_108105218_108107580_108107630_108109997_108110050_108113067
79622	chr19	+	848	4	NNC	ENSMUSG00000024661.8	novel	929	4	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2724.49448929929	1	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTCTTTTCTTTGTGAT	4927	False	NA	NA	False	NA	NA	NA	9960067	9962455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9960348_9961544_9961683_9961930_9962050_9962144
79623	chr12	+	2012	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	1257.21867628508	25	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGGTAATTGAAGCTATC	4818	False	NA	NA	False	NA	NA	NA	71021492	71041282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71034094_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
79624	chr17	+	2429	4	FSM	ENSMUSG00000072761.11	ENSMUST00000186431.7	526	4	-211	-1692	-211	285	multi-exon	FALSE	canonical	3	37	junction_1	17.5689119374726	171	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAAGTATGCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	17514493	17540058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_17514852_17536339_17536467_17536705_17536767_17538175
79625	chr13	+	3308	6	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	306	2	NA	NA	-4635	2267	intron_retention	FALSE	non_canonical	0	0	junction_1	53.0720265299903	4	34	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGATAATTAATAAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	66256658	66328181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66256769_66258074_66258269_66267450_66267578_66267777_66267839_66325249_66327512_66327627
79626	chr5	+	3190	15	NIC	ENSMUSG00000064037.14	novel	3144	14	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	349.787253125353	89	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGAAGATTGGCTAAGATT	NA	False	NA	NA	False	NA	NA	NA	31652095	31670244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_31652228_31652861_31652956_31653922_31653984_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
79627	chr1	-	3592	13	NIC	ENSMUSG00000003458.13	novel	2901	17	NA	NA	100	-88	intron_retention	FALSE	canonical	3	465	junction_4	33.2368395007708	12	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTTTGTTGGGGTTTTT	9096	False	NA	NA	False	NA	NA	NA	171910262	171893667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_171894364_171894897_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
79628	chr7	+	2556	5	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	0	-166	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	203.181415242635	4	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTATAAATATGTCCCAG	NA	False	NA	NA	False	NA	NA	NA	42827011	42841367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838947_42839994_42840161
79629	chr17	-	2304	15	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	1672	901	1643	-62	3prime_fragment	FALSE	canonical	3	465	junction_13	59.7598937244636	1	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAACCCAAACGGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	79242823	79227335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003
79630	chr2	+	793	8	Antisense	novelGene_ENSMUSG00000077733.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	24	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCCGACAACGCTCGCC	NA	False	NA	NA	False	NA	NA	NA	10060840	10085183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_10060983_10063813_10063887_10068118_10068160_10068251_10068400_10068925_10069123_10073420_10073553_10074503_10074538_10085157
79631	chr15	-	3687	7	NNC	ENSMUSG00000009575.15	novel	1146	6	NA	NA	-14	465	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	214.945535737157	217	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTATTGTGTATATGGG	NA	False	NA	NA	False	NA	NA	NA	103148257	103104648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_103104708_103105259_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103148159
79632	chr5	+	1982	14	Antisense	novelGene_ENSMUSG00000119906.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGGAAGCCTGGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	22691590	22755356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_22692215_22704972_22705087_22721701_22721815_22727390_22727439_22728515_22728625_22729811_22729867_22731360_22731452_22731532_22731581_22734151_22734286_22738762_22738873_22742519_22742593_22751393_22751597_22752921_22753015_22755189
79634	chr15	+	3801	5	NIC	ENSMUSG00000033669.9	novel	2960	5	NA	NA	19	6	intron_retention	FALSE	canonical	2	3	junction_4	43.2051790876973	3	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGTACTTTGAACTCAAA	NA	False	NA	NA	False	NA	NA	NA	76763477	76776601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76773408
79635	chr3	+	4190	24	FSM	ENSMUSG00000025437.16	ENSMUST00000197748.5	4183	24	-11	4	0	1	multi-exon	FALSE	canonical	3	245	junction_13	66.1683137664235	239	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGGTGATTTTCTAACT	NA	False	NA	NA	False	NA	NA	NA	152052114	152099250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
79636	chr11	+	5365	12	NNC	ENSMUSG00000017548.16	novel	4303	15	NA	NA	11752	-20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	591.658587614108	51	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCTTCTGCTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	79898368	79924928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_79898389_79901383_79901470_79904189_79904422_79905968_79906063_79910504_79910611_79912917_79913096_79915735_79915828_79915993_79916138_79916622_79916781_79919973_79920173_79920832_79921754_79921793
79637	chrX	+	2395	12	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-29	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1090.72251434807	1	62	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473311	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483291_100485137_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
79638	chr9	-	1841	4	NNC	ENSMUSG00000110834.2	novel	461	4	NA	NA	-190	1819	at_least_one_novel_splicesite	FALSE	canonical	3	60	junction_1	29.8477618740315	91	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	124044959	124031168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_124032567_124033755_124033817_124033999_124034127_124044704
79639	chr9	-	5465	27	NNC	ENSMUSG00000056131.14	novel	2666	13	NA	NA	-6	31282	intron_retention	FALSE	non_canonical	0	0	junction_1	227.859813645487	26	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAACTGCCATCTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	86453887	86405147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_86405188_86406274_86406401_86408822_86408958_86413765_86413822_86414980_86415087_86417959_86418026_86418165_86418311_86418491_86418574_86424409_86424520_86424785_86424938_86425061_86425124_86427293_86427445_86430220_86430360_86430853_86430908_86432053_86432225_86433702_86433827_86436066_86437457_86438244_86438419_86439555_86439679_86440447_86441567_86443873_86443958_86444588_86444747_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
79640	chr14	-	2774	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	59	18	47	-1	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	1546	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCTTTTGACCTAGAGT	8037	False	NA	NA	False	NA	NA	NA	20530142	20505345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
79641	chr9	-	6447	9	ISM	ENSMUSG00000040524.10	ENSMUST00000159109.2	7777	10	32105	1195	2453	-1195	3prime_fragment	FALSE	canonical	2	5	junction_1	3.9350190596743	94	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCTTAGATTCTGCAGAA	NA	False	NA	NA	False	NA	NA	NA	65702741	65600867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_65602977_65603424_65603504_65604313_65604531_65604775_65604952_65608103_65608471_65609553_65611901_65613372_65613461_65638257_65638484_65701903
79642	chr18	+	4679	4	FSM	ENSMUSG00000102918.2	ENSMUST00000076807.7	4687	4	2	6	2	-6	multi-exon	FALSE	canonical	3	36	junction_1	87.788888185743	11	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAAGTGTGACCGCGTCT	NA	False	NA	NA	False	NA	NA	NA	37939464	37974920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_37942031_37958073_37958133_37966317_37966407_37972955
79643	chr19	+	3497	8	NNC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	-2101	-24	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	347.653533840571	652	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCTATCTTTAACTTC	7795	False	NA	NA	False	NA	NA	NA	5414667	5421530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5415186_5415844_5415983_5416459_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
79644	chr12	+	2397	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160683.8	1027	10	-3	-1367	-3	-479	multi-exon	FALSE	canonical	3	3391	junction_7	435.06460425613	1233	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGATAAGAAAGAGTTCC	4767	False	NA	NA	False	NA	NA	NA	71021441	71042642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
79645	chrX	-	6930	8	FSM	ENSMUSG00000055780.11	ENSMUST00000069509.4	4120	8	62	-2872	62	2872	multi-exon	FALSE	canonical	3	16	junction_1	4.17475405605784	102	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTATACCATTGACTCAA	NA	False	NA	NA	False	NA	NA	NA	50889959	50839963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50889689_50889806_50889878
79646	chr5	+	1267	6	ISM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	71	3620	1	557	5prime_fragment	FALSE	canonical	3	7026	junction_3	291.678864506841	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGCAATAAGGTTTTGC	NA	False	NA	NA	False	NA	NA	NA	108048438	108053251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582
79647	chr4	-	3114	17	ISM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	3848	19	2147	-19	3prime_fragment	FALSE	canonical	3	287	junction_9	37.7631909900368	3	89	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTCTTTCTGGGTAC	3697	False	NA	NA	False	NA	NA	NA	41120607	41114445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537
79648	chr4	-	4096	25	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	241	-236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	106.520603119251	1	205	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGCAGCCACTCCCTG	90	False	NA	NA	False	NA	NA	NA	41124214	41114662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119891_41120023_41120185_41120273_41120390_41120537_41120676_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
79650	chr5	-	4469	16	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	46	481	combination_of_known_junctions	TRUE	canonical	3	25	junction_15	19.3934696912818	91	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCATCTTGCTTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	77053191	77023300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805
79651	chr2	+	3516	13	NIC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	1	0	intron_retention	FALSE	canonical	3	937	junction_9	56.2506790082474	43	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGCTCAGTGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	164675767	164682952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
79652	chr16	+	3009	6	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	0	-39	intron_retention	FALSE	non_canonical	0	0	junction_4	68.9562179937386	12	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAGTCTCATTACAAATAA	NA	False	NA	NA	False	NA	NA	NA	3702531	3722594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3718744_3719648_3720000_3721329
79653	chr4	-	2554	6	NNC	ENSMUSG00000028568.17	novel	3141	6	NA	NA	-9	-466	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	440.040634487316	2	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTTGCATTTTGATCAC	NA	False	NA	NA	False	NA	NA	NA	108690770	108671957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108674084_108675381_108675442_108676412_108676535_108683296_108683411_108687714_108687781_108690704
79654	chr17	+	3262	20	NNC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-7	62	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	53.7523303624185	378	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCCGTGTCATTTTGTC	NA	False	NA	NA	False	NA	NA	NA	64171002	64446553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_64171051_64184991_64185134_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
79655	chr11	-	2197	7	Antisense	novelGene_ENSMUSG00000020458.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTCACAAGTTCTGGGGT	NA	False	NA	NA	False	NA	NA	NA	29692042	29657154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_29658769_29683630_29683839_29686357_29686497_29690978_29691045_29691491_29691543_29691690_29691754_29691986
79656	chr13	+	3051	5	NNC	ENSMUSG00000074867.5	novel	449	4	NA	NA	-14	5265	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	11.9032558571174	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTCTTAATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	62367355	62389223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62367452_62381070_62381198_62381382_62381444_62382774_62385460_62389141
79657	chr8	-	1952	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	51	5	3	-5	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACCCATGCAGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	112737904	112720079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
79658	chrX	+	7447	2	Genic_Genomic	ENSMUSG00000083763.2	novel	448	1	NA	NA	-715	83646	multi-exon	FALSE	non_canonical	0	0	junction_1	0	587	113	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTAGATTGCAGCGCAAAA	NA	False	NA	NA	False	NA	NA	NA	102270595	102355404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_102277874_102355235
79659	chr11	-	2757	5	NIC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	267.149770727957	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	54678502	54608281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_54610551_54611068_54611184_54614399_54614502_54647231_54647386_54678385
79661	chr13	+	3979	4	Antisense	novelGene_ENSMUSG00000069184.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	62	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGGAAAATAAAGATTA	NA	False	NA	NA	False	NA	NA	NA	74517447	74526987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_74520949_74523088_74523181_74524552_74524681_74526729
79662	chr12	+	4157	10	NIC	ENSMUSG00000020571.14	novel	2175	13	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	2594	junction_6	185.266441432299	5	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAACGTCTGTGATTATCTT	NA	False	NA	NA	False	NA	NA	NA	17316590	17334770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
79663	chr14	-	2953	9	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	7	1206	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	123.451850431656	1	143	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATTTTTAAAGTTTGATT	NA	False	NA	NA	False	NA	NA	NA	21102569	21084875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21086772_21087180_21087261_21088129_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102522
79664	chr9	+	1807	16	Intergenic	novelGene_1100	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	8	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTATGAATCTGTCTGTAC	NA	False	NA	NA	False	NA	NA	NA	65995419	66085250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_65995852_65996399_65996474_65996811_65996891_65997868_65998012_66000439_66000647_66001640_66001735_66001903_66002018_66003839_66003912_66004676_66004765_66005615_66005755_66008622_66008669_66012155_66012219_66012802_66012931_66016798_66016896_66073146_66073159_66085231
79665	chr12	-	6779	28	Antisense	novelGene_ENSMUSG00000020580.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	203	19	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTACATCATAATTACTCAT	NA	False	NA	NA	False	NA	NA	NA	17037815	16992792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_16992956_16998458_16998603_17000572_17000711_17002496_17002588_17003259_17003422_17004907_17004976_17007224_17007307_17007461_17007509_17008117_17008255_17008339_17008433_17008628_17008874_17009400_17009508_17011614_17011775_17015009_17015173_17015468_17015652_17016622_17016695_17018211_17018314_17018578_17018766_17021044_17021144_17021225_17021321_17022661_17022840_17022979_17023149_17024840_17024912_17025468_17025560_17026034_17026112_17027540_17027803_17027887_17028102_17034636
79666	chr4	-	1758	1	NIC	ENSMUSG00000029022.19	novel	1813	10	NA	NA	11	-775	mono-exon	FALSE	NA	NA	NA	NA	NA	5	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCTAACTGTCACCACT	NA	False	NA	NA	False	NA	NA	NA	147953112	147951354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147951400_147953100
79667	chr3	+	2794	5	FSM	ENSMUSG00000027879.10	ENSMUST00000029476.9	2810	5	16	0	-10	0	multi-exon	FALSE	canonical	3	330	junction_4	8.07774721070176	1075	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGTGTGAAGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	97808521	97830592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_97808737_97814536_97814647_97819894_97820056_97821815_97821963_97828431
79668	chr5	+	2642	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	31	-1	5	1	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	951	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTTGTTGTTGAAT	NA	False	NA	NA	False	NA	NA	NA	124717233	124735744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
79669	chr17	+	3755	16	NIC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-2	-993	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	174.368753571912	1	103	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCGGAAGGAACCAAGTG	NA	False	NA	NA	False	NA	NA	NA	32255381	32280837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274290_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
79670	chr13	-	1164	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	10	-263	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	22	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTTGGTACACGACTT	NA	False	NA	NA	False	NA	NA	NA	34314327	34310993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34311581_34312325_34312515_34312854_34312966_34313228_34313338_34314159
79671	chr8	-	2153	14	NNC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	15	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	510.556037527343	2760	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCAGTCATGCATGCT	7654	False	NA	NA	False	NA	NA	NA	41827657	41793698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796762_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827552
79672	chr8	-	1941	12	ISM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	19859	518	-4877	-54	3prime_fragment	FALSE	canonical	3	999	junction_6	119.745391049869	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGACAGTCTGCGGTG	NA	False	NA	NA	False	NA	NA	NA	41807951	41793751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863
79673	chr16	-	5448	11	NNC	ENSMUSG00000034064.15	novel	2922	11	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	362.643199302014	20	104	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGGCTCCTCATTTACT	6244	False	NA	NA	False	NA	NA	NA	38370606	38345498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38354726_38355106_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
79674	chr2	-	2948	5	Antisense	novelGene_ENSMUSG00000055612.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	73	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATTTCGTGCCGGAAACT	NA	False	NA	NA	False	NA	NA	NA	72317236	72312130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_72312292_72312771_72312857_72313698_72315081_72315509_72315655_72316061
79675	chr6	-	3341	16	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	29	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1112.43461530705	1	121	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTTTGGTTCTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	88875733	88860456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874265_88874496_88875626
79676	chr2	+	5196	6	NNC	ENSMUSG00000027573.12	novel	1655	5	NA	NA	109	6511	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	72.0183309998225	531	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTCCTGGGAGAGTTAG	NA	False	NA	NA	False	NA	NA	NA	180352018	180367037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630_180364008_180366868
79677	chr6	-	3645	17	NIC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	461	junction_16	79.9677425200312	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAACTTAAAGTATATC	NA	False	NA	NA	False	NA	NA	NA	97182523	97160970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97180556_97182266_97182309_97182493
79678	chr9	+	6891	19	ISM	ENSMUSG00000039585.16	ENSMUST00000135298.8	12198	43	120847	6	-28	-6	3prime_fragment	TRUE	canonical	3	42	junction_5	12.1392384897534	67	54	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAATATGTGTGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	59779025	59836143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59779315_59781884_59781967_59782484_59782698_59791762_59791876_59796695_59796839_59801423_59801648_59802043_59802161_59802475_59802665_59803772_59803821_59807632_59807745_59810189_59810252_59813174_59813368_59814630_59814760_59815476_59815583_59817098_59817231_59817866_59817991_59829005_59829209_59830903_59831026_59831853
79679	chr13	-	2990	2	Intergenic	novelGene_1460	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	24	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAACCTGGAAATAAAGT	1331	False	NA	NA	False	NA	NA	NA	67010198	66974986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66977867_67010088
79680	chr4	-	3974	27	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	193	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	102.717225441339	3	88	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTACCTGACTTGTCT	-8	True	NA	NA	False	NA	NA	NA	41124262	41114434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114580_41114889_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122205_41123273_41123376_41123458_41123660_41124158
79681	chrX	+	2400	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	158	4	-22	-4	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	2	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473318	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
79682	chr11	-	3704	15	NNC	ENSMUSG00000020451.18	novel	3693	15	NA	NA	-1	47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	65.742579312755	2	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAGGATGGATAATCACG	9854	False	NA	NA	False	NA	NA	NA	3321336	3294208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300637_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
79683	chr1	-	7984	3	FSM	ENSMUSG00000045210.9	ENSMUST00000057438.7	9749	3	-35	1800	-35	-1800	multi-exon	FALSE	canonical	3	96	junction_2	5	111	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAGCTTATCAATATTT	NA	False	NA	NA	False	NA	NA	NA	9818642	9790646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_9795576_9807190_9807278_9815674
79685	chr11	+	3446	6	NNC	ENSMUSG00000034285.16	novel	1926	10	NA	NA	3608	-2	intron_retention	TRUE	non_canonical	0	0	junction_1	515.606594216948	13	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACGTTGTGGTGTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	4836871	4844198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4838037_4838246_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
79686	chr16	+	4099	9	NNC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	122.113100750902	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGCTAGACTTGATTTGTC	NA	False	NA	NA	False	NA	NA	NA	18317637	18385428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18317702_18317795_18317891_18319689_18320241_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
79688	chr8	-	4930	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	199	-1666	-15	-30	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	230	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGTAATAAAAACATGTG	5810	False	NA	NA	False	NA	NA	NA	25591802	25529189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
79689	chr3	-	1956	1	FSM	ENSMUSG00000069083.5	ENSMUST00000091289.5	1590	1	-107	-259	-107	259	mono-exon	FALSE	NA	NA	NA	NA	NA	2	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATGTGATTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	25266876	25264920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_25264900_25266900
79690	chr6	+	1585	3	ISM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	6583	27	6304	-27	3prime_fragment	FALSE	canonical	3	1209	junction_1	51.5	3	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CACAATAATTAAAAAACAAA	9247	False	NA	NA	False	NA	NA	NA	122292261	122294612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122292394_122293008_122293136_122293286
79691	chrX	-	5384	5	NNC	ENSMUSG00000046032.17	novel	1002	5	NA	NA	2	3015	at_least_one_novel_splicesite	FALSE	non_canonical	2	40	junction_1	181.166187518532	513	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTGCTGAGTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	100266153	100252549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100256360_100256403_100257471_100258006_100258132_100259088_100259185_100265867
79692	chr19	+	3709	9	NNC	ENSMUSG00000024726.11	novel	4518	8	NA	NA	28	-529	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	420.054163174227	483	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGGTTGTTTCCCTCA	NA	False	NA	NA	False	NA	NA	NA	18648155	18684035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_18648230_18648481_18648567_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383
79693	chr2	-	3130	27	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	47	-1559	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.658284825745	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGGGTTATGTCTTGA	NA	False	NA	NA	False	NA	NA	NA	62242318	62161975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62162422_62162743_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
79694	chr8	+	2546	5	NNC	ENSMUSG00000052446.18	novel	698	4	NA	NA	196	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	167.372899538725	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGTTTGTAGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	72707486	72724176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72707523_72719637_72719765_72719943_72720005_72721742_72723226_72723337
79695	chr9	+	3891	9	NIC	ENSMUSG00000032495.9	novel	666	5	NA	NA	-276	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	99.4054198723591	146	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTCCACGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	110782590	110813134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_110782957_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
79696	chr11	-	3092	21	FSM	ENSMUSG00000020923.18	ENSMUST00000107123.10	2759	21	-26	-307	-26	2	multi-exon	FALSE	canonical	3	90	junction_20	173.298954122637	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCGGCTGCCGTCTCTGTT	8180	False	NA	NA	False	NA	NA	NA	102208487	102196816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
79697	chr5	-	3319	4	ISM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	-2	-298	-2	298	intron_retention	FALSE	canonical	3	453	junction_3	32.3144274623924	612	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTTTTAAATGGTCCCA	10009	False	NA	NA	False	NA	NA	NA	34326873	34310925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748
79698	chr13	-	2900	3	ISM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	124	2	124	-2	3prime_fragment	FALSE	canonical	3	5540	junction_1	49.5	14	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGATTATTTGAATTC	7836	False	NA	NA	False	NA	NA	NA	67053318	67048682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_67048891_67049465_67049633_67050793
79699	chr11	+	6290	24	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	29	-9	intron_retention	FALSE	non_canonical	0	0	junction_23	105.069677124467	751	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGGAAATGTTCTCTGTT	NA	False	NA	NA	False	NA	NA	NA	45946847	46038161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618_46036592_46036646
79700	chr1	-	2750	8	NNC	ENSMUSG00000026484.14	novel	3201	8	NA	NA	0	-114	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	192.049419660245	1	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTGAAATTTTATCTAAG	NA	False	NA	NA	False	NA	NA	NA	151376562	151345270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151347169_151347388_151347561_151348822_151348858_151349009_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
79701	chr1	+	3228	10	ISM	ENSMUSG00000037860.16	ENSMUST00000147604.8	2839	12	68230	-207	-87	207	3prime_fragment	FALSE	canonical	3	10	junction_1	34.5450144694044	534	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAATGTTGCTTGTATGT	NA	False	NA	NA	False	NA	NA	NA	173246674	173293813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_173247122_173248136_173248253_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
79703	chr1	+	3034	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	12	-1129	5	-81	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	960	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAAAACACCTAAACTGT	NA	False	NA	NA	False	NA	NA	NA	171954333	171963979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
79704	chr2	-	2253	9	NIC	ENSMUSG00000027406.14	novel	1616	12	NA	NA	6	0	intron_retention	FALSE	canonical	3	745	junction_3	47.7048215592512	53	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTATCTGGTTTTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	130126348	130121232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_130122472_130122875_130123023_130123132_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
79705	chr17	-	3977	15	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	0	1	intron_retention	FALSE	canonical	3	46	junction_11	122.203681597235	2	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTGTGGAGACAGCTTC	NA	False	NA	NA	False	NA	NA	NA	24746820	24727826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729346_24729429_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24733192_24733686_24733841_24735478_24735574_24737715_24737774_24738104_24738221_24746739
79706	chr16	+	2811	7	NIC	ENSMUSG00000022900.15	novel	2878	8	NA	NA	-7302	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	143.540547891141	65	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCTAAATTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	36528597	36547097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541797_36542032_36542244_36543001_36545878
79707	chr7	+	2537	11	FSM	ENSMUSG00000006024.14	ENSMUST00000006181.7	2517	11	-18	-2	-18	2	multi-exon	TRUE	canonical	3	1130	junction_8	65.9754499795189	2598	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCACATCTCATTCATTC	NA	False	NA	NA	False	NA	NA	NA	15832364	15851902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_15832700_15841477_15841558_15842975_15843093_15846508_15846556_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
79708	chr5	-	4599	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	-6	116	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	43	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAGAACAAAAGCTTGTA	NA	False	NA	NA	False	NA	NA	NA	74226415	74159270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
79709	chrX	+	5396	33	FSM	ENSMUSG00000031295.14	ENSMUST00000033652.9	4133	33	4	-1267	4	1267	multi-exon	FALSE	canonical	3	71	junction_12	13.3855098894289	103	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAATGTATTTATCTG	NA	False	NA	NA	False	NA	NA	NA	159285433	159375404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
79710	chr7	+	1228	6	NNC	ENSMUSG00000063229.16	novel	1277	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3267.49160060129	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499717_46503410_46503531_46504400
79711	chr7	+	1492	9	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2722.83995811359	1	76	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400_46504466_46504556
79712	chr5	-	431	2	Antisense	novelGene_ENSMUSG00000106144.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGTGTGTAAGTGGAATAA	NA	False	NA	NA	False	NA	NA	NA	25869022	25860681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_25860769_25868678
79713	chr8	+	2568	13	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_11	387.614033400352	1144	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2139	False	NA	NA	False	NA	NA	NA	13388786	13428442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13424209_13424309_13427141
79715	chr5	+	2609	15	NIC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	890	-111	intron_retention	FALSE	canonical	3	145	junction_5	18.240457387749	1	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATTGAGTCCGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137017219	137025391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_137017326_137017425_137017850_137017979_137018044_137018451_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
79716	chr7	-	2019	4	Antisense	novelGene_ENSMUSG00000108878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	108	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCCTCCTGTCCGGACCT	NA	False	NA	NA	False	NA	NA	NA	83548381	83541257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83541682_83544735_83544969_83546955_83547020_83547083
79717	chr1	-	2193	13	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2759.90707749172	2	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287167	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278415_86278720_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283910_86284270_86284464_86284678_86285175_86285828_86285946_86286927
79718	chr8	+	4646	18	FSM	ENSMUSG00000036712.16	ENSMUST00000211554.2	4638	18	26	-34	-2	34	multi-exon	TRUE	canonical	3	5	junction_1	16.8699483019167	81	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTACTCCTTGGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	89423700	89475117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_89423728_89428932_89429067_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
79719	chr8	+	4256	17	NNC	ENSMUSG00000036712.16	novel	7954	17	NA	NA	19	90	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	16.474293421874	14	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACAACACACAAAACTCGT	4636	False	NA	NA	False	NA	NA	NA	89431868	89475173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456_89474173_89474442
79720	chr11	-	3473	10	FSM	ENSMUSG00000007646.14	ENSMUST00000153073.8	2061	10	9	-1421	9	-525	multi-exon	FALSE	canonical	3	11	junction_2	58.9867112048589	725	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTCTGTGTGTGTATAC	NA	False	NA	NA	False	NA	NA	NA	87295323	87267995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_87270314_87271657_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
79722	chr13	+	3071	2	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24298	477	intron_retention	FALSE	canonical	3	42	junction_1	0	1	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	66901206	66927683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66901313_66924718
79723	chr10	-	3877	2	NIC	ENSMUSG00000004667.19	novel	2403	4	NA	NA	-29	1055	intron_retention	FALSE	canonical	3	3009	junction_1	0	166	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGCTGTTCTCGAACC	5571	False	NA	NA	False	NA	NA	NA	79875573	79870727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_79874448_79875416
79724	chr9	+	5273	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	-53	569	-53	-569	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	1703	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGAACACTGTCTTTTTT	8312	False	NA	NA	False	NA	NA	NA	18203367	18228169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
79725	chr12	+	4606	15	FSM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	105	13	105	-13	multi-exon	FALSE	canonical	3	312	junction_10	63.740545517411	325	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCCAGCTTATATGCAT	8463	False	NA	NA	False	NA	NA	NA	73954782	73994291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988461_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
79727	chr18	+	4001	13	FSM	ENSMUSG00000000420.16	ENSMUST00000000430.14	3977	13	-30	6	-30	2	multi-exon	FALSE	canonical	3	33	junction_1	166.935283534934	247	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATATGATACTCTGAGTA	NA	False	NA	NA	False	NA	NA	NA	24338370	24419869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_24338576_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
79728	chr10	+	4481	28	NNC	ENSMUSG00000039994.16	novel	4457	29	NA	NA	-4	-35	intron_retention	FALSE	non_canonical	0	0	junction_15	101.912184151178	1	139	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGGAGACAGAGGCAAGA	6637	False	NA	NA	False	NA	NA	NA	128067979	128088686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083114_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087951_128088060
79729	chr10	-	2837	16	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	70.2071854505569	664	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGGACAAAACCCTTTC	8034	False	NA	NA	False	NA	NA	NA	62487069	62451673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
79730	chr2	+	2836	22	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-11	-4	intron_retention	FALSE	canonical	0	0	junction_14	85.894730699297	880	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAGTTGTTGTATGCTG	NA	False	NA	NA	False	NA	NA	NA	130266273	130285650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215
79731	chr11	+	3805	4	FSM	ENSMUSG00000020453.18	ENSMUST00000057089.13	3118	4	-124	-563	-124	563	multi-exon	FALSE	canonical	3	276	junction_3	67.6576348652209	522	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACATATTTCTTTTTTCTT	6328	False	NA	NA	False	NA	NA	NA	3240314	3259646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3257647
79732	chr13	-	3542	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	31	381	0	-11	multi-exon	FALSE	canonical	3	421	junction_9	46.3947102135844	6	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACTTCAAGTTTTAGGG	NA	False	NA	NA	False	NA	NA	NA	59823594	59782820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
79733	chr11	+	6159	18	NIC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	152	-5	intron_retention	FALSE	canonical	3	393	junction_5	41.533077658565	3	114	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCAGTTCTCACGTCACC	NA	False	NA	NA	False	NA	NA	NA	119159005	119176275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_119161505_119163695_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
79734	chr11	+	4530	11	Antisense	novelGene_ENSMUSG00000082110.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	131	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCCCCCGCCTCACACTG	NA	False	NA	NA	False	NA	NA	NA	78458003	78588293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_78459802_78462296_78462393_78463060_78463258_78465666_78465756_78474150_78474251_78477694_78477909_78480132_78480215_78481706_78481816_78509100_78509153_78517398_78517531_78586632
79735	chr17	+	3959	10	Antisense	novelGene_ENSMUSG00000096780.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACTGAAACGGGAAATGCA	NA	False	NA	NA	False	NA	NA	NA	6708460	6719364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_6709216_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836
79736	chr14	-	2986	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5197	210	at_least_one_novel_splicesite	FALSE	canonical	3	278	junction_1	39.5924235176378	18	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAACTTGTTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	59608116	59584645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
79737	chr1	-	4356	21	FSM	ENSMUSG00000036086.17	ENSMUST00000086614.12	4210	21	-146	0	-145	0	multi-exon	FALSE	canonical	3	115	junction_3	27.0654761642946	172	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	NA	False	NA	NA	NA	128030345	127881920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
79739	chr3	+	5406	22	NNC	ENSMUSG00000001415.11	novel	4448	22	NA	NA	-14	-6	intron_retention	FALSE	non_canonical	0	0	junction_12	79.846479681075	17	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCACTCTGCCTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	88243603	88269639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88259538_88259917_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
79740	chr3	-	2115	3	NNC	ENSMUSG00000027944.14	novel	1092	7	NA	NA	278	0	intron_retention	TRUE	canonical	0	0	junction_2	976.5	5	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7803	False	NA	NA	False	NA	NA	NA	89905391	89902759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89903018_89903120_89903695_89904108
79741	chr2	-	2950	20	NNC	ENSMUSG00000036281.14	novel	2039	13	NA	NA	7	-24	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	17.8541335018671	2	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCCCAACCCCACACTGT	NA	False	NA	NA	False	NA	NA	NA	26270631	26256649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26257123_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262770_26262838_26262985_26263093_26263330_26263479_26264032_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
79742	chr9	-	3224	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	25	10	25	-10	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	460	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGGTAATTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	31043124	31000707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
79743	chr2	-	3541	12	Antisense	novelGene_ENSMUSG00002075003.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	46	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCAGTGCGCACGCGC	4637	False	NA	69	True	NA	NA	NA	25242215	25222759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_25222988_25223445_25223554_25224386_25224503_25228122_25228278_25231616_25231729_25233236_25233416_25234977_25235127_25235412_25235605_25238580_25238709_25239184_25239386_25239463_25239594_25240372
79744	chr3	-	3631	18	NNC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-472	12062	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2077	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGGATAACAAATACCCAC	4786	False	NA	NA	False	NA	NA	NA	89090072	89075999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89076226_89077349_89077421_89077597_89077717_89080683_89080851_89081503_89081597_89082249_89082380_89082462_89082545_89082695_89082777_89082949_89083040_89083697_89084958_89085289_89085373_89086399_89086529_89086621_89086744_89087556_89087688_89088035_89088195_89088480_89088582_89089230_89089350_89089604
79745	chr3	-	7286	5	Antisense	novelGene_ENSMUSG00000028093.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	91	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACACCCGGGATTCGGGTC	NA	False	NA	NA	False	NA	NA	NA	97083832	97066178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_97066680_97073156_97073287_97073388_97079057_97081116_97081212_97082940
79746	chr4	-	3570	10	Antisense	novelGene_ENSMUSG00000095096.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	23	65	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAAAAGGCAGAACTTCC	NA	False	NA	NA	False	NA	NA	NA	146319730	146038204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146038357_146094934_146095020_146102107_146102183_146126781_146126865_146129874_146130003_146131534_146133425_146134351_146134881_146199411_146199581_146255218_146255468_146319520
79747	chr11	-	4361	9	NNC	ENSMUSG00000020740.14	novel	3816	17	NA	NA	-1448	9	intron_retention	FALSE	canonical	3	11	junction_1	117.201682475125	8	76	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACTACTGAGGTCACTG	9861	False	NA	NA	False	NA	NA	NA	115481795	115475180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115476681_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115481360_115481712
79748	chr5	+	6793	35	FSM	ENSMUSG00000034021.16	ENSMUST00000202170.4	6598	35	137	-332	49	-283	multi-exon	FALSE	canonical	2	95	junction_31	24.4340259944524	99	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTATGTATACGACATT	NA	False	NA	NA	False	NA	NA	NA	150597340	150733662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_150597419_150639867_150639995_150643287_150643492_150645759_150645847_150645942_150646041_150646709_150646837_150652358_150652440_150659743_150659885_150662665_150662782_150667628_150667724_150670070_150670217_150671560_150671713_150673298_150673413_150677852_150677935_150679846_150679896_150682136_150682277_150684483_150684600_150688365_150688472_150693251_150693413_150698859_150698984_150701617_150701777_150702675_150702745_150704073_150704211_150706483_150706608_150711779_150711985_150713969_150714085_150715578_150715712_150716031_150716152_150717013_150717077_150717732_150717879_150720035_150720142_150724042_150724483_150724586_150724695_150729038_150729178_150731277
79749	chr3	+	3313	10	NIC	ENSMUSG00000034544.18	novel	3213	10	NA	NA	-3	-1	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	108.773408151936	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGTGACTGCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	66893296	67265727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_66893522_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
79750	chr12	+	6032	32	Genic_Genomic	ENSMUSG00000020955.10	novel	757	6	NA	NA	53272	49681	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	24	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGACACTTTGCTAATTA	NA	False	NA	NA	False	NA	NA	NA	51791091	51841250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_51791440_51791546_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795793_51797101_51797240_51798636_51798841_51800523_51800651_51800824_51800914_51800999_51801205_51801702_51801886_51803828_51803885_51806001_51806221_51807792_51807957_51809208_51809330_51810803_51810938_51814338_51814561_51815311_51816007_51819055_51819236_51819323_51819491_51820610_51820931_51821428_51821570_51823273_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834759_51836950_51837037_51837138_51837399_51838002_51838225_51841195
79751	chr3	+	4187	1	NIC	ENSMUSG00000053931.12	novel	2049	7	NA	NA	3008	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	NA	False	NA	NA	NA	121247661	121251848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_121247700_121251800
79752	chr10	+	3467	24	NNC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	50.6212445221907	1	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9121	False	NA	NA	False	NA	NA	NA	41352337	41363026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358736_41359495_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
79753	chr19	-	2699	3	NIC	ENSMUSG00000010095.14	novel	1393	8	NA	NA	2357	-75	intron_retention	FALSE	canonical	3	3203	junction_2	50	3	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCCCCAGGCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	8687992	8685055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_8685459_8685557_8686775_8686913
79754	chr14	-	3636	5	Antisense	novelGene_ENSMUSG00000021767.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGACTTCCTCCAAGAAG	NA	False	NA	NA	False	NA	NA	NA	21671702	21531501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21531622_21566693_21567565_21659819_21659930_21668957_21669074_21669283
79755	chr17	+	4099	2	FSM	ENSMUSG00000025737.6	ENSMUST00000160275.2	716	2	-1003	-2380	10	3	multi-exon	FALSE	canonical	3	131	junction_1	0	9	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCACTTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	26042632	26047698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26043661_26044627
79756	chr7	+	6239	18	FSM	ENSMUSG00000030779.17	ENSMUST00000052135.14	6184	18	-62	7	-62	-4	multi-exon	FALSE	canonical	3	62	junction_15	18.9192419579373	245	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCACTTGTTGCAAATG	7504	False	NA	NA	False	NA	NA	NA	122569724	122601773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052_122589157_122589267_122589606_122591191_122591289_122591446_122591526_122591622_122591678_122593892_122593962_122596165_122596529_122596818_122596921_122597747_122599503_122599806
79757	chr1	-	7422	1	NIC	ENSMUSG00000026014.16	novel	10024	14	NA	NA	5675	0	mono-exon	FALSE	NA	NA	NA	NA	NA	98	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTTTAAAGCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	60529765	60522343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_60522300_60529800
79758	chr4	+	5413	11	NNC	ENSMUSG00000040945.14	novel	3767	13	NA	NA	-6369	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	1386.13529281957	24	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGGCTTTCATGATTCCT	8890	False	NA	NA	False	NA	NA	NA	140435292	140450531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140442253_140442460_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
79759	chr4	+	4749	7	FSM	ENSMUSG00000028278.15	ENSMUST00000098190.10	5008	7	259	0	141	0	multi-exon	FALSE	canonical	3	113	junction_4	9.38823140367177	120	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGAAGTGGGGTCTCT	0	True	NA	NA	False	NA	NA	NA	32983295	33022180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
79760	chr11	-	2470	25	NNC	ENSMUSG00000018340.14	novel	2471	25	NA	NA	-26	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	170.911359213872	1	85	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGTGTGTGCTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	54924297	54869930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887160_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904658_54904742_54912362_54912407_54924184
79761	chr6	+	8483	14	ISM	ENSMUSG00000071226.12	ENSMUST00000100993.9	4849	19	70514	-4281	1340	-5	3prime_fragment	FALSE	canonical	3	70	junction_9	27.8922270778249	132	40	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAGTAAGGCTTTCGTGT	NA	False	NA	NA	False	NA	NA	NA	120714056	120748146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_120714110_120715116_120715287_120720743_120720828_120727812_120727967_120729600_120729731_120731485_120731524_120731609_120731702_120732477_120732605_120733509_120733899_120734526_120734653_120734775_120735593_120738101_120739519_120742232_120742345_120743372
79762	chr15	-	1916	9	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	385	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	540.94777936507	96	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056408	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046455_83050344_83050408_83056312
79763	chr15	-	1539	5	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	401	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	707.307350096123	44	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACCCTGCCAGCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	83056392	83037699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038924_83043026_83043127_83044304_83044345_83050312_83050408_83056312
79764	chr15	-	1864	8	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	385	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	570.20891266415	5	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCAGCGTTTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	83056408	83037695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038924_83043026_83043127_83044304_83044350_83045068_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
79765	chr15	-	1994	8	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	354	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	572.960161737948	1	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGACCCTGCCAGCGTTT	NA	False	NA	NA	False	NA	NA	NA	83056439	83037701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046172_83050283_83050408_83056312
79766	chr15	-	2025	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	394	3	394	-3	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83056399	83037697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
79767	chr15	+	1905	9	Antisense	novelGene_ENSMUSG00000018042.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCCGCCTCGGTCTCAAC	2204	False	NA	NA	False	NA	NA	NA	83037697	83056402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83038926_83043027_83043127_83044304_83044393_83044540_83044619_83045017_83045044_83046072_83046160_83046434_83046503_83050266_83050408_83056312
79768	chr15	-	2118	10	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	385	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	681.541064223002	1	102	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGACCCTGCCAGCGTTT	NA	False	NA	NA	False	NA	NA	NA	83056408	83037701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83045254_83045343_83046050_83046158_83046432_83046506_83050275_83050408_83056312
79769	chr10	+	1386	8	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	27	-12	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_2	1932.37835903039	1	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTCTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	126899429	126903154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126899629_126900088_126900318_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
79770	chr14	-	2396	7	NIC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-84	-12	combination_of_known_splicesites	FALSE	canonical	2	13	junction_6	237.969477501259	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGCATTAAGCATTTTG	NA	False	NA	NA	False	NA	NA	NA	40688848	40628415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40688732
79771	chrX	+	3604	23	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	45	-724	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	186.195889027951	3	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	NA	False	NA	NA	NA	150799468	150844966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150816721_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
79772	chr14	-	2208	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-164	-112	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_7	1069.86047571634	7	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCTGAGACTTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	63746369	63729907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735701_63737569_63737770_63746158
79773	chr8	+	3624	14	ISM	ENSMUSG00000001909.17	ENSMUST00000137953.8	3647	15	204	101	10	56	3prime_fragment	FALSE	canonical	3	466	junction_5	51.4742424241105	11	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCCCCTGGACCAAAGGC	NA	False	NA	NA	False	NA	NA	NA	85416115	85426336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
79774	chrX	-	2969	8	NIC	ENSMUSG00000031167.17	novel	1338	7	NA	NA	9	-2	combination_of_known_junctions	FALSE	canonical	2	63	junction_1	380.838816406144	63	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCATGTGTGTTACACG	6508	False	NA	NA	False	NA	NA	NA	8011989	8005218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8007448_8009065_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
79775	chrX	-	3350	11	NNC	ENSMUSG00000067369.13	novel	4099	12	NA	NA	2	-1522	intron_retention	FALSE	canonical	0	0	junction_2	14.6700374914313	718	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACCCCACACTGTGAGC	NA	False	NA	NA	False	NA	NA	NA	133177667	133125370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_133125455_133138891_133140140_133140207_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
79776	chr8	-	2040	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	-34	2	-34	-2	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	3167	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATGCAGTGTTACTTT	NA	False	NA	NA	False	NA	NA	NA	112737989	112720076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
79778	chr9	+	1826	4	FSM	ENSMUSG00000000088.8	ENSMUST00000213678.2	1818	4	-7	-1	-7	1	multi-exon	FALSE	canonical	3	7868	junction_3	735.670820106082	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTGTGATGTTGTC	365	False	NA	NA	False	NA	NA	NA	57428549	57439710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57428699_57436238_57437646_57438951_57439076_57439564
79779	chr12	-	3451	18	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-1	2	intron_retention	FALSE	canonical	3	128	junction_17	35.8278274249651	340	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAGACTGATTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	84664132	84649304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84661979_84662099_84662219_84664056
79780	chr13	+	6494	7	FSM	ENSMUSG00000021540.17	ENSMUST00000069557.14	6584	7	83	7	27	-7	multi-exon	FALSE	canonical	3	51	junction_1	16.5495887830752	131	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTACAGTGTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	56850905	56890183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
79781	chr12	-	4005	5	NIC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-16	-4	intron_retention	FALSE	canonical	3	9641	junction_1	442.411855627762	88	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGACTGACTTATTTA	NA	False	NA	NA	False	NA	NA	NA	65120719	65109213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_65109515_65110451_65110550_65112510_65115884_65116724_65116827_65120588
79782	chr12	+	6345	21	Antisense	novelGene_ENSMUSG00000020964.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	307	19	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCTCCGTCCTCCTTGGC	NA	False	NA	NA	False	NA	NA	NA	91772818	91815968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_91776828_91778650_91778779_91780604_91780777_91781390_91781467_91781746_91781916_91782541_91782689_91782994_91783085_91784055_91784121_91784993_91785070_91786812_91786887_91790309_91790363_91791591_91791749_91792070_91792155_91793279_91793341_91793427_91793485_91797462_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810040_91815733
79783	chr1	-	5154	25	NIC	ENSMUSG00000033364.14	novel	4974	26	NA	NA	-50	143	combination_of_known_junctions	FALSE	canonical	3	147	junction_23	24.5588861491903	163	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAAAAAAAAAGGCTC	NA	False	NA	NA	False	NA	NA	NA	74545015	74476745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_74478638_74479118_74479258_74480690_74480761_74483571_74483688_74489653_74489715_74491845_74492013_74492986_74493243_74495237_74495380_74499073_74499140_74500724_74500890_74506073_74506154_74507425_74507544_74509695_74509887_74510454_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
79784	chr1	+	3672	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	205	-1	-21	1	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	2615	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTACTGTGTCTGTGCTTTA	862	False	NA	NA	False	NA	NA	NA	58432261	58446513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
79785	chr9	+	5106	37	Antisense	novelGene_ENSMUSG00000099147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	251	16	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACGAGACCCCGGCTTTT	15	False	NA	NA	False	NA	NA	NA	20818513	20864112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_20818858_20819166_20819256_20819765_20820057_20820402_20820579_20820984_20821166_20821434_20821605_20822715_20822857_20823030_20823315_20823480_20823592_20823866_20823952_20825191_20825388_20827017_20827239_20828596_20828772_20829204_20829337_20829410_20829616_20829729_20829854_20831157_20831281_20831399_20831501_20833316_20833496_20833588_20833778_20834061_20834218_20835000_20835093_20835320_20835431_20837736_20837848_20837937_20838010_20838378_20838467_20840342_20840426_20841420_20841464_20843411_20843496_20845814_20845855_20847837_20847925_20849365_20849440_20851770_20851857_20852672_20852879_20852993_20853105_20853880_20853920_20864005
79786	chr13	-	5560	14	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	109	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_13	17.1357268913424	18	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGTTGTATTCAC	NA	False	NA	NA	False	NA	NA	NA	64396347	64340358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
79787	chr8	-	4686	5	FSM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	38	218	4	-218	multi-exon	FALSE	canonical	3	1135	junction_3	55.4301362076623	1634	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCACAACCCTCCAATAAC	NA	False	NA	NA	False	NA	NA	NA	121394822	121380870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522_121387600_121394495
79788	chr19	-	4161	24	NNC	ENSMUSG00000024943.10	novel	3448	24	NA	NA	-6	-469	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.664984354455	6	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTTTTAATAACTAAAT	NA	False	NA	NA	False	NA	NA	NA	23251188	23184283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23184429_23185331_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
79790	chr3	+	1390	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	99	0	35	0	multi-exon	FALSE	canonical	3	743	junction_2	141.598022585063	106	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	NA	False	NA	NA	NA	89084878	89090072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
79791	chr15	+	3386	12	Antisense	novelGene_ENSMUSG00000022387.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	181	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCATCTATCAAGGACTG	NA	False	NA	NA	False	NA	NA	NA	88572029	88614252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_88572683_88573710_88573870_88574067_88574177_88575413_88575539_88575951_88576087_88584975_88585473_88591235_88591498_88596818_88597128_88597496_88597624_88598087_88598222_88601110_88601268_88613533
79792	chr14	+	5286	14	ISM	ENSMUSG00000042323.18	ENSMUST00000112095.8	7907	31	48569	1	-16497	-1	3prime_fragment	FALSE	canonical	3	94	junction_10	35.9532898808223	184	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGATCAGCCAGGTTTG	NA	False	NA	NA	False	NA	NA	NA	30789663	30843548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30789922_30796727_30796940_30804506_30804693_30806030_30806189_30806742_30807007_30809472_30809619_30811421_30811580_30827303_30827488_30828094_30828306_30829065_30829268_30835805_30835962_30838969_30839041_30839156_30839374_30840685
79793	chr10	+	3824	10	NNC	ENSMUSG00000019817.19	novel	3946	9	NA	NA	0	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	49.7326184041554	11	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATATATCTCCTAACCT	3054	False	NA	NA	False	NA	NA	NA	12966575	13006703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_12966769_12967518_12967557_12981598_12981638_12988262_12988295_12989901_12989965_12992453_12992526_13000599_13000913_13002885_13004741_13005369_13006380_13006494
79794	chr9	-	3587	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	2	481	2	-481	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	529	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATCAAGTCTTTGAAGA	NA	False	NA	NA	False	NA	NA	NA	123546688	123526557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
79795	chr17	-	2288	5	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	67	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTAGTTAAAAAAAAAAACA	1956	False	NA	NA	False	NA	NA	NA	29262174	29255213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29255421_29257461_29257597_29259746_29259786_29260178_29260267_29260355
79798	chr11	-	3196	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	5	-142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1599.6441510536	1	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTTGTAAATAATTATG	8968	False	NA	NA	False	NA	NA	NA	106680006	106671322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676347_106677734_106677901_106679098_106679286_106679841
79799	chr5	-	2686	2	NNC	ENSMUSG00000041313.15	novel	7179	13	NA	NA	12598	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	752	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAACTCACTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	148266941	148264225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148266658_148266687
79800	chr19	+	2786	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-36	310	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	90.951078967938	25	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAATCCCAGACTCCTAA	NA	False	NA	NA	False	NA	NA	NA	38043422	38063181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
79801	chr3	+	2523	18	NNC	ENSMUSG00000027774.17	novel	4078	18	NA	NA	-3	275	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	181.46901515192	1	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTATATAAGGGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	67337445	67382412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347526_67347586_67350887_67351043_67352105_67352191_67357011_67357154_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
79802	chr6	-	2573	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	6	-322	6	-15	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	1510	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCTTTGTTTTTCATTTA	NA	False	NA	NA	False	NA	NA	NA	97182602	97160645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
79804	chr7	+	2938	15	NIC	ENSMUSG00000030852.19	novel	3906	21	NA	NA	-17869	27	intron_retention	FALSE	canonical	3	192	junction_1	41.9540565040242	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTCCTCTTTCTAAAT	NA	False	NA	NA	False	NA	NA	NA	130276416	130366158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
79805	chr9	+	4214	33	NNC	ENSMUSG00000035024.17	novel	5149	35	NA	NA	78	-848	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_23	43.8330907391893	2	95	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACCAAAGGTAAGTTCTGG	NA	False	NA	NA	False	NA	NA	NA	26942022	27005759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983089_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696
79806	chr15	+	5681	20	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	8	-1	intron_retention	FALSE	canonical	3	200	junction_2	37.3328963831441	622	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAACTGTCTTCTTTGC	NA	False	NA	NA	False	NA	NA	NA	57775642	57833462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57824380_57827199_57827321_57831304_57831401_57833119
79807	chr12	-	2114	16	Antisense	novelGene_ENSMUSG00000073079.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACACACTTCCGCTTCC	NA	False	NA	NA	False	NA	NA	NA	55160033	55127260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_55127471_55135954_55136063_55136918_55137013_55138033_55138117_55142597_55142703_55143891_55143959_55144038_55144097_55146695_55146849_55148124_55148274_55148607_55148708_55149251_55149339_55151974_55152049_55152400_55152509_55155284_55155456_55157868_55157966_55159583
79808	chr19	+	2473	14	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	2	74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	321.137788635876	3	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGGTAATAATTTTCCC	217	False	NA	NA	False	NA	NA	NA	46064381	46072974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071548_46071632_46071803_46071958_46072066_46072189_46072283_46072450
79809	chr8	-	4451	16	NIC	ENSMUSG00000031878.19	novel	1808	20	NA	NA	-10	0	intron_retention	FALSE	canonical	3	7	junction_7	195.065276823483	88	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3346	False	NA	NA	False	NA	NA	NA	105261256	105237659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105256749_105257024_105257129_105261143
79810	chr9	+	1513	6	Antisense	novelGene_ENSMUSG00000032127.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTCCTCAGAACTGGC	4339	False	NA	NA	False	NA	NA	NA	44259384	44265275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_44259882_44260199_44260558_44263893_44264069_44264209_44264407_44264509_44264649_44265128
79811	chr2	+	2329	2	FSM	ENSMUSG00000000827.19	ENSMUST00000130261.2	764	2	-151	-1414	-151	491	multi-exon	FALSE	canonical	3	1175	junction_1	0	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAATCCACATCCATTTG	NA	False	NA	NA	False	NA	NA	NA	181154219	181158540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181154881_181156872
79812	chr16	+	3899	22	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	50	28094	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_19	158.769217416642	29	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACATATATGTGTGTACA	NA	False	NA	NA	False	NA	NA	NA	48251649	48410097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48408165_48408583_48409134_48409231_48409475_48409724
79813	chr1	-	6526	29	NIC	ENSMUSG00000034088.16	novel	6231	28	NA	NA	-32	-7	combination_of_known_junctions	FALSE	canonical	1	2	junction_28	143.474607545043	2	133	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGATGCAGTGTGATGG	NA	False	NA	NA	False	NA	NA	NA	93406569	93333668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93389065_93389322_93406434
79814	chr3	+	4726	8	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	52	1	intron_retention	FALSE	canonical	3	910	junction_4	51.9076888646114	55	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAATTGCTTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	105866736	105877077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105873742_105874478
79816	chr14	-	2268	5	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	328	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2153.37216651001	1	111	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTAATTTCTGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	36857252	36842452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36855131_36855241_36855604_36855753_36857144
79817	chr6	-	3499	10	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	-34	-52	intron_retention	FALSE	non_canonical	0	0	junction_3	3425.25408627675	1	154	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGGATTTGTGAGTAGACA	NA	False	NA	NA	False	NA	NA	NA	51446908	51438176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440474_51441068_51441192_51441407_51441528_51442160_51442222_51443121_51443203_51443282_51443385_51443482_51443686_51443885_51444033_51444164_51444272_51446650
79818	chr9	-	9245	22	FSM	ENSMUSG00000040661.7	ENSMUST00000046502.7	9305	22	34	26	16	-26	multi-exon	TRUE	canonical	3	17	junction_10	7.57277616039918	109	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTGTAAAATAAAGTTT	7329	False	NA	NA	False	NA	NA	NA	106666359	106565306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_106570910_106573070_106573164_106575316_106575407_106577693_106577894_106579843_106580041_106580690_106580864_106581263_106581470_106582966_106583067_106585413_106585533_106587532_106587652_106587866_106588119_106589530_106589709_106590442_106590786_106593259_106593457_106594384_106594519_106594947_106595131_106596111_106596339_106596806_106596924_106597523_106597664_106599914_106600114_106631143_106631338_106666178
79819	chr8	-	4428	24	NNC	ENSMUSG00000031835.17	novel	4336	24	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	190.976418540519	1	81	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8151	False	NA	NA	False	NA	NA	NA	120285464	120234894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264362_120264435_120265492_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120276296_120276446_120285384
79820	chr4	-	5918	44	Antisense	novelGene_ENSMUSG00000089081.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	94	12	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGCTAGATGTGGCGGCA	2192	False	NA	NA	False	NA	NA	NA	148624829	148536782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_148536888_148537476_148537587_148538213_148538448_148539008_148539209_148540437_148540575_148543081_148543356_148543436_148543547_148547240_148547431_148548148_148548276_148548757_148549003_148549401_148549432_148552787_148552824_148553438_148553547_148553838_148553914_148554675_148554812_148555026_148555157_148556366_148556622_148565321_148565409_148568011_148568178_148568764_148568880_148569082_148569244_148570503_148570597_148571230_148571379_148573930_148574074_148575789_148575953_148576075_148576220_148596223_148596301_148599279_148599421_148605743_148605850_148608914_148609030_148610178_148610258_148610453_148610557_148614931_148615064_148615133_148615265_148618316_148618433_148619361_148619479_148620963_148621215_148621816_148621918_148622317_148622414_148622729_148622830_148622917_148623042_148623183_148623364_148624433_148624571_148624739
79821	chr9	+	2774	14	Fusion	ENSMUSG00000032607.13_ENSMUSG00000007815.14	novel	2082	9	NA	NA	0	-6	multi-exon	FALSE	canonical	0	0	junction_8	633.938426816109	1	71	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAATTTCCTGTATTCTC	NA	False	NA	NA	False	NA	NA	NA	108174120	108215127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846_108214577_108214615
79822	chr1	-	6207	24	FSM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	29	11	-12	-11	multi-exon	FALSE	canonical	3	518	junction_15	35.6964730086209	465	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTTCTGTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	135358208	135310060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
79823	chr2	-	3866	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	59	1	0	-1	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	314	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAGTCTCTCGAGTTACT	NA	False	NA	NA	False	NA	NA	NA	156977126	156939453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
79824	chr10	+	5183	22	NIC	ENSMUSG00000035311.17	novel	5390	21	NA	NA	18	-8	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	50.8812587730597	117	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATTGAAACTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	88215105	88283174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_88215159_88215330_88215398_88236513_88236600_88247777_88247898_88248466_88248509_88250254_88250461_88254986_88255052_88255287_88255423_88264354_88264517_88265322_88265503_88265701_88265873_88267194_88267319_88268302_88268507_88268910_88269951_88271863_88272064_88272213_88272434_88273296_88273411_88274989_88275076_88275312_88275412_88276085_88276254_88279170_88279262_88281624
79825	chr2	-	3951	1	Antisense	novelGene_ENSMUSG00000044349.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GTAAAAAAAAAAAAAAAAAA	3127	False	NA	NA	False	NA	NA	NA	158228044	158224093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_158224100_158228000
79826	chr1	+	4034	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	-87	-5	-87	0	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCTGACTGTGTGGTAT	9283	False	NA	NA	False	NA	NA	NA	87603873	87648229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
79827	chr4	-	2859	18	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	2171	-182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.7346178218283	10	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTCAGCTCAAATAGCAC	3721	False	NA	NA	False	NA	NA	NA	41120583	41114608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114875_41114942_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537
79828	chr12	-	2268	5	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	0	intron_retention	FALSE	canonical	3	7551	junction_3	376.663643055711	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	111638734	111635794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111638014_111638199_111638408_111638663
79829	chr5	-	3837	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	66	78	60	-78	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	1	157	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATAAACCTACTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	77099359	77061200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
79830	chr8	-	3021	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	-54	-1789	-54	1789	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	7487	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACATTTTCTAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	112580977	112493333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
79831	chr15	+	6804	9	NNC	ENSMUSG00000091050.2	novel	2147	2	NA	NA	-28634	-1839	intron_retention	FALSE	non_canonical	0	0	junction_1	0	185	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGGGGCGACCACCGAG	NA	False	NA	NA	False	NA	NA	NA	98436570	98465625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98442489_98444403_98444476_98444625_98444790_98446546_98446593_98449794_98449857_98452480_98452542_98458076_98458207_98462927_98463010_98465356
79833	chr5	+	3390	10	Fusion	ENSMUSG00000087250.3_ENSMUSG00000086234.4	novel	831	2	NA	NA	-14230	25735	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	32	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGAAGCAGTGGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	74160645	74226399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_74162799_74163345_74163425_74163815_74164013_74166483_74166571_74177322_74177391_74189794_74190032_74192964_74193179_74197693_74197774_74209325_74209507_74226305
79834	chr13	-	5836	6	Fusion	ENSMUSG00000113473.2_ENSMUSG00000074863.6	novel	559	6	NA	NA	10	1539	multi-exon	FALSE	non_canonical	0	0	junction_1	112.373306438851	32	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATTGTTAGGAAGTAT	6818	False	NA	NA	False	NA	NA	NA	62860557	62816573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62821757_62823062_62823124_62823332_62823469_62853514_62853576_62853943_62854172_62860390
79835	chr13	+	6142	7	Antisense	novelGene_ENSMUSG00000021427.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGGGGCGGGGCCTGCGG	NA	False	NA	NA	False	NA	NA	NA	38162180	38178220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_38167463_38169239_38169319_38169950_38170027_38171491_38171756_38173479_38173567_38175971_38176085_38177979
79836	chr8	-	3365	16	Antisense	novelGene_ENSMUSG00000041438.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	15	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCCGGGAACTCGCCAAC	NA	False	NA	NA	False	NA	NA	NA	107649708	107620342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_107620603_107621220_107621384_107624691_107624883_107625072_107625159_107627477_107627564_107630857_107631077_107632756_107632927_107633019_107633114_107634836_107634932_107637571_107637637_107638855_107638981_107639979_107640135_107642785_107642893_107644211_107645437_107648802_107648913_107649494
79837	chr4	-	3412	24	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	14	-437	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	200.364393940561	1	88	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATTATGTTTTCTCCTC	2	True	NA	NA	False	NA	NA	NA	41275102	41194752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216594_41229784_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
79838	chr1	+	3025	14	NNC	ENSMUSG00000026280.18	novel	4173	13	NA	NA	11	-1176	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_10	119.519798562919	1226	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTGTGTGTGTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	93682637	93717156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712350_93712390_93712474_93712621_93713631_93713689_93714232_93714327_93715407
79839	chr17	-	5544	22	FSM	ENSMUSG00000023923.11	ENSMUST00000024717.10	5435	22	-121	12	0	-4	multi-exon	TRUE	canonical	2	15	junction_3	5.14990698460791	102	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGAACTGGGATCACATCC	NA	False	NA	NA	False	NA	NA	NA	51486317	51040163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_51043273_51048503_51048648_51049084_51049165_51063654_51063755_51089288_51089453_51106894_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
79840	chr16	-	2604	9	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18865	10809	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTCTCCGTTAAGCACAG	NA	False	NA	NA	False	NA	NA	NA	38412527	38378875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38379122_38384473_38384661_38393412_38393638_38396103_38396187_38402327_38402487_38405739_38405879_38406580_38406771_38408544_38408664_38411271
79841	chr4	-	6073	25	ISM	ENSMUSG00000033295.15	ENSMUST00000049074.13	7656	33	55189	5	-200	-5	3prime_fragment	TRUE	canonical	3	357	junction_20	54.2148343526833	235	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTAGGCCTCTGTCTCAGC	NA	False	NA	NA	False	NA	NA	NA	118093413	118065414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_118067087_118067565_118067702_118067813_118067969_118068197_118068324_118068555_118068683_118068896_118069076_118069160_118069447_118069523_118069679_118069916_118070037_118070653_118070830_118070937_118071062_118074288_118074387_118077689_118077806_118080422_118080578_118080914_118081134_118081695_118081790_118081874_118082129_118082225_118082324_118082995_118083575_118083650_118083769_118087891_118088086_118088682_118088989_118092155_118092301_118092745_118092883_118093109
79842	chr11	-	2059	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	271	0	-238	0	multi-exon	FALSE	canonical	3	2240	junction_1	249.671049855795	4528	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5653	False	NA	NA	False	NA	NA	NA	100510723	100473643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
79843	chr17	+	1837	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	22	54	10	-54	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCCTCACACCCGACCCC	4669	False	NA	NA	False	NA	NA	NA	29312764	29319642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29312836_29317370_29317812_29318317
79844	chr7	+	2953	14	NIC	ENSMUSG00000004056.16	novel	4544	14	NA	NA	-22	-2	intron_retention	FALSE	canonical	1	5	junction_5	142.7593249216	708	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGGGCCCAGTCCACAT	NA	False	NA	NA	False	NA	NA	NA	27291148	27338871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328759_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
79846	chr6	+	6251	13	NIC	ENSMUSG00000029833.18	novel	4042	19	NA	NA	12333	-14	intron_retention	FALSE	canonical	3	444	junction_3	61.0698029580359	23	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGGAAAAACAAATGTTTG	3977	False	NA	NA	False	NA	NA	NA	37904488	37943217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_37904576_37908288_37908436_37920347_37920466_37922455_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
79847	chr14	-	4371	23	NIC	ENSMUSG00000032849.15	novel	5504	30	NA	NA	49385	-92	combination_of_known_splicesites	FALSE	canonical	2	15	junction_4	56.258057274176	2	33	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCATACAAGTATGTTCCTA	NA	False	NA	NA	False	NA	NA	NA	118864958	118720195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_118721853_118727910_118728046_118737377_118737484_118738119_118738293_118753844_118754001_118763623_118763816_118765362_118765464_118766378_118766490_118767269_118767390_118771403_118771555_118790695_118790776_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863
79848	chr9	-	5384	7	NNC	ENSMUSG00000036986.17	novel	4343	8	NA	NA	24	-586	intron_retention	FALSE	non_canonical	0	0	junction_6	134.147514160925	4	216	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGGCCTGTAGTGTTAA	2175	False	NA	NA	False	NA	NA	NA	58157045	58126410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58142217_58154257_58155515_58156604
79849	chr12	+	3280	7	NIC	ENSMUSG00000021037.8	novel	1377	9	NA	NA	-3	-8	intron_retention	FALSE	canonical	3	2699	junction_5	156.851309632191	12	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGCATGCATTTCTTA	NA	False	NA	NA	False	NA	NA	NA	87313468	87320745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_87313696_87314928_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
79850	chr13	+	3026	6	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-39	2290	multi-exon	FALSE	non_canonical	0	0	junction_5	56.2295296085607	1	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTCGCTGAAACCTGG	NA	False	NA	NA	False	NA	NA	NA	66261254	66328204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325521_66327512_66327619
79851	chrX	-	2447	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	215	8	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_11	415.100266688614	3	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTTCTTTGCTTACT	NA	False	NA	NA	False	NA	NA	NA	100128743	100122807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128447
79852	chr13	-	5101	7	FSM	ENSMUSG00000016477.19	ENSMUST00000102948.11	5097	7	-9	5	-9	-5	multi-exon	FALSE	canonical	3	88	junction_5	17.007351351695	200	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGACTTGTGGATGGAT	NA	False	NA	NA	False	NA	NA	NA	30170055	30090562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30169282
79853	chr7	-	4195	14	NIC	ENSMUSG00000030846.16	novel	2835	13	NA	NA	-4	-11	intron_retention	FALSE	canonical	3	7	junction_8	99.1746412519633	442	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTATGTAAGTGGCTTTC	NA	False	NA	NA	False	NA	NA	NA	128063074	128041511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128048454_128048523_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128060320_128060381_128062848
79854	chr13	+	3894	10	Fusion	ENSMUSG00000113295.2_ENSMUSG00000113836.2	novel	378	3	NA	NA	63231	651	multi-exon	TRUE	non_canonical	0	0	junction_1	3.77123616632825	1	223	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAACACAGACTTGTAAG	NA	False	NA	NA	False	NA	NA	NA	61866347	62199451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_61866450_61887645_61887957_61889663_61889791_61889975_61890037_61891398_61891927_61892276_61892535_61892953_61893123_61893372_61893457_62008993_62009002_62197205
79855	chr1	+	3642	6	NIC	ENSMUSG00000034432.12	novel	2593	7	NA	NA	-25	0	intron_retention	FALSE	canonical	3	708	junction_5	23.6862829502647	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTGGCTCTAGAAATTT	NA	False	NA	NA	False	NA	NA	NA	90531172	90540846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_90531350_90532096_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
79856	chr15	+	6664	31	FSM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	-6	0	-6	0	multi-exon	TRUE	canonical	3	138	junction_1	58.1614706370692	307	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTGAGAGTTGAAGCTA	353	False	NA	NA	False	NA	NA	NA	102204694	102232792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102204851_102205194_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
79857	chr4	-	3199	7	Antisense	novelGene_ENSMUSG00000028788.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	104	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCAAGAGGAGGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	129743315	129704991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_129705207_129705922_129706098_129732770_129733470_129736460_129736556_129738854_129738984_129740255_129740333_129741506
79858	chr17	-	2236	15	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	1901	740	1872	99	3prime_fragment	FALSE	canonical	3	465	junction_13	59.7598937244636	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79242594	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003
79859	chr4	-	5998	18	Antisense	novelGene_ENSMUSG00000040455.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	126	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCAGGAGCTTCTGCGCCT	NA	False	NA	NA	False	NA	NA	NA	21837869	21776291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_21776316_21780338_21780448_21781732_21781906_21782879_21783011_21784704_21784792_21796783_21796927_21797292_21797392_21798601_21798736_21804225_21804312_21810739_21810822_21815304_21815407_21816889_21816940_21817502_21817643_21824414_21825078_21826152_21826254_21830418_21830501_21832160_21832317_21834233
79860	chrX	-	7325	6	Intergenic	novelGene_3999	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	174	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGGGGAAAGCGCTTGAGG	NA	False	NA	NA	False	NA	NA	NA	102439658	102400091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_102400496_102409819_102409873_102417202_102417361_102430860_102430916_102431590_102431651_102433063
79861	chr4	-	2747	24	NNC	ENSMUSG00000028559.18	novel	2871	24	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	139.977003242222	1	87	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	109059380	108918846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930018_108930130_108930233_108930347_108940285_108940446_108943523_108943623_108944586_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013912_109029466_109029502_109059297
79862	chr10	+	2835	7	Antisense	novelGene_ENSMUSG00000020248.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1239	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCCCTCTACGTGACACC	6070	False	NA	NA	False	NA	NA	NA	82584534	82599969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_82586652_82587217_82587299_82588239_82588439_82590798_82590930_82592535_82592630_82597666_82597745_82599834
79863	chr19	+	3412	10	ISM	ENSMUSG00000055491.15	ENSMUST00000111899.8	5246	14	7167	112	-4128	-2	3prime_fragment	FALSE	canonical	3	236	junction_3	88.0661928380446	2	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATTTTTAAGTGGTATT	NA	False	NA	NA	False	NA	NA	NA	46052144	46061238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
79864	chrX	-	2582	13	FSM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	-42	-10	7	10	multi-exon	FALSE	canonical	3	815	junction_5	66.9966831683148	1069	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTGTGAGATGAGGG	NA	False	NA	NA	False	NA	NA	NA	95000561	94978930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
79865	chr16	+	3307	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-621	2284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	130.5	138	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCAGACAGGTGGCCTG	2243	False	NA	NA	False	NA	NA	NA	93811678	93815379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93812370_93812713_93814317_93814366
79866	chr10	+	3914	12	FSM	ENSMUSG00000037846.19	ENSMUST00000117086.2	2246	12	-104	-1564	6	-2	multi-exon	FALSE	canonical	3	52	junction_10	13.4870614459296	246	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAATTGCTTCTGATTCC	NA	False	NA	NA	False	NA	NA	NA	67815440	67879692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
79867	chr13	-	2768	14	NNC	ENSMUSG00000025453.19	novel	3122	15	NA	NA	-201	-83	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.4692566042882	42	42	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGTAGCTTCGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	119545734	119472066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_119472734_119472777_119472943_119474911_119475028_119476362_119476482_119491194_119491277_119494038_119494199_119502869_119503017_119518211_119518400_119523114_119523204_119525729_119525818_119531146_119531365_119533282_119533513_119541087_119541291_119545438
79868	chr9	-	3395	6	NNC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	16	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	95.0347304936464	7	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGTATGGGATCCTTTC	NA	False	NA	NA	False	NA	NA	NA	57744028	57697636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57703944_57741050_57741516_57743964
79869	chr2	+	2277	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	6	-2	6	2	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	9500	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCTTAGCCTGCTGCTT	220	False	NA	NA	False	NA	NA	NA	90677622	90696986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
79870	chr16	+	4401	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	-533	-1870	-270	1870	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	553	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTCTGCATCGTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	84570740	84609754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
79871	chr14	-	1676	10	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1325.39470943658	53	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63737855_63737969_63746152
79872	chr5	+	5666	13	ISM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	27449	12	-20	2	intron_retention	FALSE	canonical	3	470	junction_9	26.8425191316563	11	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTAAGGTTGGGG	NA	False	NA	NA	False	NA	NA	NA	34758665	34789640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758
79873	chr11	-	3096	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	27	2377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.1068669888635	94	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGGACTCGGGTGGTGTG	2917	False	NA	NA	False	NA	NA	NA	95805690	95754391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95755710_95756685_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
79874	chr9	-	1927	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	-53	-7	-48	-1	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	1051	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGTGTCTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	48406647	48400001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
79875	chr12	-	5195	12	NNC	ENSMUSG00000021189.12	novel	5363	11	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.573691791276	414	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTCTATTTCTAATTT	NA	False	NA	NA	False	NA	NA	NA	101924459	101885159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_101886990_101887112_101889464_101892742_101892837_101899221_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
79876	chr19	+	2462	13	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	11	-2	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_9	382.20991178496	6	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCCGGGTCCGTTTCTTT	845	False	NA	NA	False	NA	NA	NA	6413962	6427224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424213_6424314_6424578_6424639_6424748_6424929_6426325
79877	chr11	-	2894	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	-118	11	-118	-11	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	1547	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAAAAGTCACCTTGCCT	9910	False	NA	NA	False	NA	NA	NA	86574780	86474701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
79878	chr5	+	2158	12	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	14	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	759.11328219615	5	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650729	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652566_45654635_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
79880	chr1	+	2834	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	-59	-302	-59	302	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	1033	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTCGGAAAGTTGTCAG	NA	False	NA	NA	False	NA	NA	NA	180720613	180726970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
79881	chr2	+	4619	35	NIC	ENSMUSG00000044308.18	novel	8072	39	NA	NA	17142	2088	combination_of_known_junctions	TRUE	non_canonical	3	58	junction_27	18.7160534685987	34	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACGCAGAGCAAGGAAAGG	3275	False	NA	NA	False	NA	NA	NA	69744788	69848897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_69744898_69747420_69747580_69752588_69752733_69753227_69753278_69764732_69764800_69766235_69766367_69768427_69768657_69774643_69774824_69775357_69775492_69778767_69778855_69781686_69781753_69781843_69781934_69783084_69783214_69783831_69783885_69783986_69784121_69784619_69784706_69786308_69786451_69789910_69790008_69795717_69795860_69800480_69800586_69801403_69801578_69803492_69803954_69808062_69808152_69809662_69809813_69813471_69813606_69819129_69819241_69821768_69821982_69824019_69824157_69830801_69830888_69833697_69833804_69839446_69839551_69843433_69843559_69846475_69846584_69846683_69846810_69848736
79882	chr8	+	3524	7	Antisense	novelGene_ENSMUSG00000031951.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	355	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGGAGCTAGCAGGAGG	NA	False	NA	NA	False	NA	NA	NA	112638070	112660481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112640742_112641120_112641227_112641888_112641969_112644920_112645067_112645459_112645589_112659991_112660161_112660258
79884	chr19	+	5472	10	NNC	ENSMUSG00000045098.20	novel	6130	13	NA	NA	-5329	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	101.103906947259	1	189	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATTCGGAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	3836390	3868280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854582_3854778_3854834_3854916_3855054_3857224_3857422_3864114
79885	chr3	-	2550	15	FSM	ENSMUSG00000028099.9	ENSMUST00000154679.8	2406	15	-144	0	43	0	multi-exon	FALSE	canonical	3	35	junction_14	52.4860039652944	41	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	96634901	96618838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634428
79886	chr6	-	2221	17	NIC	ENSMUSG00000030061.17	novel	2257	18	NA	NA	6	51	combination_of_known_splicesites	FALSE	canonical	3	16	junction_14	172.721947342398	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTTTAAATGTTTACCA	NA	False	NA	NA	False	NA	NA	NA	97182602	97160916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97180434_97180556_97182266_97182309_97182493
79887	chr7	-	3028	11	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	155	551	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_10	264.508147322535	21	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAAGTCCTGACATTTA	NA	False	NA	NA	False	NA	NA	NA	132724740	132588740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724415
79888	chr2	+	1870	5	NNC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	443	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	99.3805816042551	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGATTGTTGTTTTATTC	NA	False	NA	NA	False	NA	NA	NA	180380509	180384069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180380583_180381010_180381728_180382318_180382375_180382505_180382536_180383075
79889	chr17	-	6795	48	FSM	ENSMUSG00000024054.15	ENSMUST00000127430.2	7052	48	257	0	242	0	multi-exon	TRUE	canonical	3	108	junction_42	32.1184571856639	203	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGTTTCCTTGATTGA	NA	False	NA	NA	False	NA	NA	NA	71782081	71651483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71652361_71655880_71655996_71656584_71656744_71660380_71660553_71665131_71665203_71665342_71665453_71667021_71667213_71668835_71668959_71670014_71670101_71672083_71672204_71672340_71672468_71676802_71676956_71677218_71677351_71677903_71677992_71684008_71684074_71685142_71685259_71686536_71686695_71687123_71687204_71688326_71688453_71693939_71694108_71696737_71696857_71697421_71697511_71698346_71698496_71701711_71701940_71705546_71705685_71707053_71707194_71710092_71710166_71714161_71714259_71718764_71718910_71722029_71722150_71722595_71722674_71733149_71733264_71733434_71733518_71734431_71734539_71735166_71735281_71736456_71736652_71738216_71738401_71743700_71743822_71747898_71748110_71748870_71748962_71750876_71751044_71755507_71755628_71755726_71755842_71762599_71762731_71763412_71763496_71770756_71770919_71772588_71772665_71781973
79890	chr1	-	3027	10	NIC	ENSMUSG00000026277.15	novel	2821	11	NA	NA	-39	-7	intron_retention	FALSE	canonical	3	169	junction_6	13.6137185711081	20	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGTTCTGATGTACAGA	NA	False	NA	NA	False	NA	NA	NA	93563390	93549630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
79891	chr16	-	2138	5	NNC	ENSMUSG00000022962.16	novel	1865	11	NA	NA	5	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	851.863985622118	7	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTGTCTGTATGTATAA	NA	False	NA	NA	False	NA	NA	NA	91443795	91435624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91436851_91437672_91438275_91438481_91438578_91439844_91440035_91443771
79892	chr9	+	2688	1	FSM	ENSMUSG00000118728.1	ENSMUST00000101993.4	72	1	-229	-2387	-229	2387	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTGAAGAAATAGGAATTT	129	False	NA	NA	False	NA	NA	NA	88957159	88959847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_88957200_88959800
79893	chr8	-	1956	14	NNC	ENSMUSG00000031948.15	novel	2008	14	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	427.726990846059	699	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	NA	False	NA	NA	NA	112737987	112720074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728436_112729142_112729237_112729906_112730073_112732263_112732421_112737841
79894	chr8	+	3357	11	NIC	ENSMUSG00000001909.17	novel	2114	15	NA	NA	-4	33	intron_retention	FALSE	canonical	3	37	junction_1	148.435204719096	2	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGCAGGTGACCCCTGG	NA	False	NA	NA	False	NA	NA	NA	85412943	85424923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85413329_85416336_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813
79895	chrX	-	3170	8	NNC	ENSMUSG00000031167.17	novel	2792	7	NA	NA	-2	0	intron_retention	FALSE	non_canonical	0	0	junction_1	498.705139663239	3	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGTGTGTTACACGTA	6559	False	NA	NA	False	NA	NA	NA	8011938	8005216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_8005858_8005988_8007448_8009489_8009572_8009896_8009991_8010077_8010685_8010811_8010919_8011193_8011312_8011876
79896	chr19	-	3058	3	NNC	ENSMUSG00000006456.11	novel	3165	3	NA	NA	472	-2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	170.5	308	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGCAGGATGGTTCTGG	8359	False	NA	NA	False	NA	NA	NA	4861068	4850598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4851834_4852578_4854044_4860710
79897	chr18	+	3150	13	FSM	ENSMUSG00000019143.16	ENSMUST00000152954.8	3336	13	190	-4	-33	4	multi-exon	FALSE	canonical	3	88	junction_10	16.7752711519731	173	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCTTTGCCTGACGCTA	NA	False	NA	NA	False	NA	NA	NA	36916250	36925619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
79899	chr2	-	3467	22	NIC	ENSMUSG00000017670.17	novel	3502	22	NA	NA	39	-91	combination_of_known_junctions	FALSE	canonical	0	0	junction_20	98.7197182250836	3	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTCTCAGTCATGAGCT	NA	False	NA	NA	False	NA	NA	NA	165168360	165131165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165167786_165167918_165168337
79900	chrX	+	2231	2	NNC	ENSMUSG00000045427.14	novel	2426	3	NA	NA	1416	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	82	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAATAAATCTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	133503450	133507775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133503512_133505605
79901	chr10	-	3883	3	ISM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	-17	-1266	-5	1266	intron_retention	FALSE	canonical	3	748	junction_2	69	45	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTTATTCAGCTGTAATA	NA	False	NA	NA	False	NA	NA	NA	128657480	128652504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128654885_128655822_128655975_128656129
79902	chr18	+	3031	7	FSM	ENSMUSG00000024317.16	ENSMUST00000072847.12	3002	7	-30	1	-30	-1	multi-exon	FALSE	canonical	3	116	junction_1	148.868416917611	1	130	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTGTGTCTTAATTAA	NA	False	NA	NA	False	NA	NA	NA	21134367	21161279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
79903	chr4	-	3968	2	FSM	ENSMUSG00000046623.9_ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	-22	-2225	-22	-1498	multi-exon	FALSE	canonical	3	573	junction_1	0	2607	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCATCTGACTCTAGAAGT	382	False	NA	NA	False	NA	NA	NA	127251996	127246376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127250167_127251818
79904	chr6	-	3118	17	ISM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	130	7295	32	547	5prime_fragment	FALSE	canonical	3	436	junction_6	45.8580946371521	4	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAGGTGAATTCCTGTAG	3525	False	NA	NA	False	NA	NA	NA	125168534	125152264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
79905	chr13	+	3570	8	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-54	2296	intron_retention	TRUE	non_canonical	0	0	junction_7	53.9413892052082	16	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCGCTGAAACCTGGAAATAA	NA	False	NA	NA	False	NA	NA	NA	66261239	66328210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66309197_66309325_66309508_66309570_66316502_66316704_66325249_66327524_66327626
79906	chr2	+	7687	23	NIC	ENSMUSG00000026812.17	novel	7702	23	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	10.8204734012935	170	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTCCGCAGTGTTGATG	3465	False	NA	NA	False	NA	NA	NA	28531261	28581176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_28531332_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568963_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
79907	chr4	+	1110	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	10	0	10	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	404	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	NA	False	NA	NA	NA	127019848	127023437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_127019987_127021611_127021793_127022646
79908	chr7	-	3545	8	NNC	ENSMUSG00000041343.20	novel	2788	13	NA	NA	27779	20551	intron_retention	TRUE	non_canonical	0	0	junction_1	0	15	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCAGTCCTTGCTGCTGAGG	NA	False	NA	NA	False	NA	NA	NA	92231493	92210379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_92210842_92216827_92216948_92217677_92217782_92221744_92223872_92223951_92224023_92224535_92224589_92227629_92227745_92231000
79909	chr6	-	1622	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	41	-2	-9	2	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	4	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGACAGTTTGGACTTTT	NA	False	NA	NA	False	NA	NA	NA	87828021	87820061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
79910	chr9	+	3471	6	FSM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	30	9473	30	742	multi-exon	FALSE	canonical	3	29	junction_1	3.8262252939418	111	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAAACCCTATCCTTTGC	NA	False	NA	NA	False	NA	NA	NA	20492650	20507232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20502634_20502718_20504456
79911	chr9	+	4539	9	NNC	ENSMUSG00000055334.5	novel	1391	9	NA	NA	4857	3042	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	70.9097137210411	574	41	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTATCTTTAACTGAGGC	NA	False	NA	NA	False	NA	NA	NA	56863018	56893532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56863201_56864297_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
79912	chr10	-	3941	6	ISM	ENSMUSG00000015755.17	ENSMUST00000146444.8	4380	7	31357	10	-613	-10	3prime_fragment	FALSE	canonical	3	37	junction_3	7.11055553385247	235	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTCTAATGTGGATTTT	NA	False	NA	NA	False	NA	NA	NA	7800637	7781426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_7783342_7785810_7785892_7786852_7786947_7787151_7787313_7794877_7796379_7800448
79913	chr10	-	3238	15	FSM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	-4	-83	-4	83	multi-exon	FALSE	canonical	3	52	junction_6	11.246768243294	175	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCTTCCTCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	75479829	75472456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
79914	chr4	+	3692	7	FSM	ENSMUSG00000028836.15	ENSMUST00000081094.6	2023	7	-76	-1593	-76	295	multi-exon	FALSE	canonical	3	255	junction_3	13.4587848221483	365	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTATTATTGTGTGTCTG	2508	False	NA	NA	False	NA	NA	NA	134070943	134082090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
79915	chr14	+	5309	11	ISM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	13	-1375	13	-1273	intron_retention	FALSE	canonical	3	289	junction_4	20.0199900099875	19	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACATAGTTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	29700306	29716551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660
79916	chr2	-	2298	12	Antisense	novelGene_ENSMUSG00000064906.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	133	16	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAAGACGTTGACAAGCC	NA	False	NA	NA	False	NA	NA	NA	119480256	119449209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119449375_119454596_119454664_119458023_119458180_119460819_119460986_119464199_119464300_119465958_119466067_119468926_119469043_119470055_119470214_119473850_119474011_119474271_119474380_119477568_119477678_119479371
79917	chr17	-	3074	16	NNC	ENSMUSG00000025733.18	novel	3189	19	NA	NA	17	0	intron_retention	FALSE	non_canonical	0	0	junction_3	61.0390039237208	4	128	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGACTGCTGTTTTTGTGT	6030	False	NA	NA	False	NA	NA	NA	26063482	26057430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26058469_26058662_26058866_26058958_26059087_26059228_26059302_26059411_26059543_26059624_26060111_26060335_26060457_26060532_26060639_26060730_26060830_26060963_26061066_26061153_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
79918	chr6	-	4227	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	-74	-786	-74	786	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	1011	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGGAATAAAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	95695855	95449203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
79919	chr8	-	3266	10	Antisense	novelGene_ENSMUSG00000031700.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	386	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGAGAGAAGGTGGCAGG	NA	False	NA	NA	False	NA	NA	NA	86254191	86229892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_86229982_86232205_86232315_86235805_86235939_86238741_86238988_86242787_86242865_86244603_86244749_86246080_86246251_86247966_86248122_86249882_86249996_86252162
79920	chr16	-	5731	8	NNC	ENSMUSG00000022863.16	novel	3013	4	NA	NA	32582	31239	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	202	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCCGGAATTGCTCCCT	NA	False	NA	NA	False	NA	NA	NA	78137642	78098285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_78098440_78098542_78098762_78122043_78122211_78125840_78126046_78130248_78130404_78131054_78131180_78131709_78131846_78133072
79921	chr8	+	4202	18	NNC	ENSMUSG00000036712.16	novel	7954	17	NA	NA	38	34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	19.1959482460686	84	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTACTCCTTGGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	89423740	89475117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_89423822_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456_89474076_89474439
79922	chr8	+	8938	24	Fusion	ENSMUSG00000031902.11_ENSMUSG00000086390.8	novel	5984	10	NA	NA	248	-1037	multi-exon	FALSE	non_canonical	0	0	junction_10	107.725092955049	164	13	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGATCCGGTGTGTTGGG	NA	False	NA	NA	False	NA	NA	NA	106786512	106863486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_106786626_106805235_106806374_106810442_106810606_106818663_106818864_106822795_106822969_106825703_106825845_106827565_106827622_106830656_106830784_106834756_106835762_106854549_106858216_106858295_106858461_106858737_106858929_106859038_106859238_106859328_106859543_106859642_106859942_106860081_106860124_106860202_106860340_106860412_106860524_106860592_106860645_106860863_106860963_106861237_106861357_106861454_106861569_106862988_106863116_106863199
79923	chr9	-	3530	10	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-5	-14	intron_retention	FALSE	canonical	3	47	junction_9	64.4739396104262	31	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGATCATTTTGAAAAAA	9243	False	NA	NA	False	NA	NA	NA	26910850	26885453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_26887057_26888851_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
79924	chr1	-	2663	14	Antisense	novelGene_ENSMUSG00000033793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAAGCCGGAACAGCTA	NA	False	NA	NA	False	NA	NA	NA	5233434	5153372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_5153502_5154638_5154787_5159231_5159332_5163582_5163674_5165835_5165951_5168250_5168355_5171290_5171347_5187612_5187708_5194496_5194692_5203305_5203483_5206031_5206161_5213972_5214074_5220169_5220282_5232323
79925	chr4	-	3463	17	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	2	-15	intron_retention	TRUE	non_canonical	0	0	junction_7	166.7939878263	9	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAGAAAGGAATA	NA	False	NA	NA	False	NA	NA	NA	115980885	115954186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957590_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967800_115967883_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
79927	chr17	+	4480	1	Intergenic	novelGene_54	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAATCCCCCAGTCTCTAC	NA	False	NA	NA	False	NA	NA	NA	17414831	17419311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17414800_17419300
79928	chr16	+	2734	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	-56	-183	-56	183	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	465	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAGCTTTTTAAATTTC	NA	False	NA	NA	False	NA	NA	NA	95946550	95959235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
79929	chr15	-	1773	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGAGTACATGGAGCC	9801	False	NA	NA	False	NA	NA	NA	22705089	22703097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704578_22704671_22704901_22705025
79930	chr3	+	4741	19	FSM	ENSMUSG00000027550.15	ENSMUST00000169079.8	5638	19	34	863	-22	-863	multi-exon	FALSE	canonical	3	53	junction_7	12.3057750168542	200	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGTACTTTAATAACTAGA	NA	False	NA	NA	False	NA	NA	NA	14598916	14632498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
79931	chr11	-	8107	28	Intergenic	novelGene_2280	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGAAAGACGCCTGCGC	NA	False	NA	NA	False	NA	NA	NA	54590068	54413714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_54413943_54434402_54434471_54437193_54437253_54443613_54443698_54452148_54452220_54459177_54459322_54501612_54501753_54510716_54510888_54513139_54513277_54516684_54516844_54517408_54517562_54522015_54522181_54525583_54525694_54526837_54527040_54530573_54530683_54533534_54533776_54540005_54540164_54548069_54548311_54551626_54552011_54554826_54555039_54559437_54559562_54567018_54567242_54570064_54570254_54574717_54574851_54581000_54581231_54582062_54582566_54585092_54585398_54586904
79932	chr13	-	5813	15	NNC	ENSMUSG00000021754.18	novel	6978	20	NA	NA	445	-5	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_10	17.2620853849335	125	37	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAACTGGTATTTTGGCTT	NA	False	NA	NA	False	NA	NA	NA	111904642	111882966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111885584_111886976_111887109_111887752_111887896_111888898_111889031_111890272_111890436_111891176_111891330_111891644_111892897_111893146_111893337_111893627_111893720_111894599_111894722_111896481_111896765_111899587_111899772_111900032_111900115_111900615_111900738_111904496
79933	chr4	-	3691	4	FSM	ENSMUSG00000028389.13	ENSMUST00000222050.2	2017	4	-225	-1449	-209	0	multi-exon	FALSE	canonical	3	19	junction_3	8.48528137423857	185	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAAGTGGTATTTTATTT	NA	False	NA	NA	False	NA	NA	NA	62126892	62107776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62110927_62122755_62122888_62123260_62123343_62126565
79934	chr10	+	2748	9	NIC	ENSMUSG00000063334.17	novel	5023	10	NA	NA	9	875	intron_retention	FALSE	canonical	3	346	junction_5	31.6780681229143	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTTACCCAGATGGTA	NA	False	NA	NA	False	NA	NA	NA	111808706	111821461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815963_111818705_111818784_111818868_111818963_111820443
79935	chr9	-	4140	14	NNC	ENSMUSG00000040936.16	novel	2639	8	NA	NA	2	21489	intron_retention	FALSE	non_canonical	0	0	junction_1	0	233	56	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGGAGGCGAGGCCCCCG	2208	False	NA	NA	False	NA	NA	NA	120789571	120762927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_120763028_120779238_120779298_120779585_120779813_120779956_120780212_120780330_120780571_120780650_120780852_120781922_120782067_120784209_120784316_120784392_120784732_120784877_120785036_120786169_120786291_120786580_120786739_120786828_120786945_120787655
79936	chr14	+	2190	9	NIC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	10	-6	intron_retention	FALSE	canonical	3	2290	junction_5	180.02113591187	20	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAATGAAGTCTTGGAGT	NA	False	NA	NA	False	NA	NA	NA	14296757	14303771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
79937	chrX	+	1514	6	NNC	ENSMUSG00000031197.12	novel	1595	6	NA	NA	11	-64	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	910.238650025366	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATACTTGTACAATGTTT	NA	False	NA	NA	False	NA	NA	NA	74557933	74578484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74558035_74560694_74560820_74564968_74565040_74566861_74566969_74574690_74574830_74577513
79938	chr17	+	2461	9	ISM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	131	-554	-49	1	3prime_fragment	FALSE	canonical	3	388	junction_5	38.719948024242	389	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTTGTCTGTAGAACT	NA	False	NA	NA	False	NA	NA	NA	79244695	79255482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
79939	chr11	+	3413	3	FSM	ENSMUSG00000017716.16	ENSMUST00000093906.5	3334	3	-90	11	-22	0	multi-exon	FALSE	canonical	3	1683	junction_1	252.5	56	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	117740054	117746558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117740288_117740579_117740690_117743488
79940	chr9	+	2519	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	35	-442	-26	442	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	129	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGGTATTAAAAAAGTAATT	NA	False	NA	NA	False	NA	NA	NA	55116243	55132159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
79941	chr11	-	4087	8	ISM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	32772	3	-371	-2	3prime_fragment	FALSE	canonical	3	259	junction_6	31.4726962976625	1	156	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGTGGGTTTTGGCTGTG	NA	False	NA	NA	False	NA	NA	NA	61437739	61408077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975
79942	chr5	+	1370	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	3	37	0	-30	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	2	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTTGGTGTGAATAAA	NA	False	NA	NA	False	NA	NA	NA	104582986	104588879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
79943	chr4	+	1507	7	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	7	-29	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	183.182741181222	24	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATAAAGTCTTTGTAGTC	NA	False	NA	NA	False	NA	NA	NA	132857857	132927038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917534_132926386
79944	chr4	+	2385	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	43.2730863239497	7	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	147637735	147669649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665698_147665826_147667290_147668501_147668887
79945	chr11	+	2518	8	NNC	ENSMUSG00000059248.14	novel	2932	10	NA	NA	-964	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	223.677610567951	3	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTCTGGAGTTCTCTT	1365	False	NA	NA	False	NA	NA	NA	117243041	117253140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250301_117251271
79946	chr2	-	1051	1	Intergenic	novelGene_2855	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGGGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	177582140	177581089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_177581100_177582100
79947	chr1	-	4152	7	ISM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	-182	234	-141	8	intron_retention	FALSE	canonical	3	939	junction_3	42.5976003497328	23	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAATTGTCCTTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	10108534	10095059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153
79948	chr14	-	2930	7	Antisense	novelGene_ENSMUSG00000040997.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	564	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTGTTAAACCTCTCCCCT	NA	False	NA	NA	False	NA	NA	NA	54506937	54491627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_54491927_54499080_54499172_54500107_54500479_54500623_54500780_54502736_54502847_54504448_54504638_54505223
79949	chr6	-	2792	5	Antisense	novelGene_ENSMUSG00000030245.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1023	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCCGGAAACACGCAGC	NA	False	NA	NA	False	NA	NA	NA	142349584	142332973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_142333096_142338055_142338148_142339653_142339830_142341910_142341995_142347266
79950	chr5	+	2315	8	ISM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	74	1513	-12	98	intron_retention	FALSE	canonical	3	1600	junction_4	151.087216331414	32	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCACTCG	8106	False	NA	NA	False	NA	NA	NA	145051098	145064996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536
79951	chr5	+	1535	10	NIC	ENSMUSG00000029622.17	novel	696	5	NA	NA	38	98	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	581.185952265805	67	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCACTCG	8171	False	NA	NA	False	NA	NA	NA	145051163	145064996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145051234_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
79952	chr5	+	2308	9	NIC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-7	98	intron_retention	FALSE	canonical	3	1664	junction_6	124.14885218962	23	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCACTCG	8111	False	NA	NA	False	NA	NA	NA	145051103	145064996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
79953	chr5	+	1523	10	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	14	94	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	586.056837929523	2	60	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGCCGGGCGTGGTGGCA	8089	False	NA	NA	False	NA	NA	NA	145051081	145064992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061404_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
79954	chr6	-	3615	5	NIC	ENSMUSG00000014748.14	novel	2984	6	NA	NA	6	0	intron_retention	FALSE	canonical	3	526	junction_1	52.0696648731293	8	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTAGTGTGTGACC	9773	False	NA	NA	False	NA	NA	NA	83752734	83745866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83748286_83748428_83749292_83750691_83750846_83751999_83752080_83752635
79955	chr12	-	3307	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	-69	-1244	-69	1236	multi-exon	FALSE	canonical	3	463	junction_1	0	1799	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCCCACACATTTGCAT	9543	False	NA	NA	False	NA	NA	NA	112793112	112782612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_112785733_112792925
79956	chr9	+	298	2	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	13979	-211	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCTCTAGCTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	57034723	57035437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57034919_57035334
79957	chr11	-	1479	9	Antisense	novelGene_ENSMUSG00000017421.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTCGAAAAATCAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	80285200	80276218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_80276854_80278625_80278765_80279801_80279970_80280078_80280155_80280597_80280648_80282156_80282225_80282657_80282817_80283907_80284003_80285111
79958	chrX	+	4675	16	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	10	-584	intron_retention	FALSE	canonical	3	247	junction_12	44.3287716951417	12	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAACAAATTGAAATTTGG	NA	False	NA	NA	False	NA	NA	NA	84091910	84248061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
79959	chr2	-	3350	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-35	2334	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	67.0261143137509	3	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATCAAGATGGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	156681775	156672634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156675347_156675537_156675645_156679742_156679834_156680337_156680457_156681454
79960	chr6	-	5500	22	NNC	ENSMUSG00000030243.17	novel	3389	15	NA	NA	8770	4678	intron_retention	TRUE	non_canonical	0	0	junction_1	70.2387893428174	265	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCCCACAAATCACTTCC	NA	False	NA	NA	False	NA	NA	NA	142323930	142291389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_142291530_142293279_142293363_142294246_142294367_142296785_142296915_142299248_142299320_142300346_142300510_142302206_142302308_142303103_142303234_142304119_142304238_142304761_142304882_142306581_142306721_142307477_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323881
79961	chr7	-	4077	31	NIC	ENSMUSG00000030491.17	novel	3651	30	NA	NA	-3	239	combination_of_known_junctions	FALSE	canonical	3	17	junction_19	212.327472446586	7	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTTTGGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	35236966	35168283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_35168618_35169090_35169158_35169241_35169396_35169477_35169592_35169681_35169746_35170616_35170727_35175357_35175531_35177478_35177572_35179565_35179777_35180441_35180630_35182464_35182565_35184629_35184851_35185024_35185165_35185844_35185963_35186578_35186708_35186956_35187149_35188061_35188190_35188623_35188781_35189354_35189541_35193254_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
79963	chr2	-	1711	2	ISM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	1192	15	1084	-13	3prime_fragment	FALSE	canonical	3	238	junction_1	0	4	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATTGTGATAGAAGTTGG	NA	False	NA	NA	False	NA	NA	NA	84556502	84553480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_84554562_84555872
79964	chr10	+	2485	8	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	16	-7	intron_retention	FALSE	canonical	2	2	junction_3	702.115520467702	3	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATACACTGGTGATATT	NA	False	NA	NA	False	NA	NA	NA	111309157	111334004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321425_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
79965	chr6	+	4153	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	12	-3417	1	-4	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	358	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTATTTCTTCCCTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	66873418	66998330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
79966	chr1	-	5952	1	Genic_Genomic	ENSMUSG00000026565.19	novel	NA	NA	NA	NA	9060	5	mono-exon	FALSE	NA	NA	NA	NA	NA	209	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTCTGTGTCTCTGTGAG	9424	False	NA	NA	False	NA	NA	NA	165698669	165692717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_165692700_165698700
79968	chr14	-	4776	32	ISM	ENSMUSG00000017485.12	ENSMUST00000017629.12	10335	36	22111	4683	-2287	1951	3prime_fragment	TRUE	canonical	3	144	junction_31	34.630560989139	193	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGTGTTCTTAGACTCT	NA	False	NA	NA	False	NA	NA	NA	6082473	6038983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_6039465_6040330_6040426_6041163_6041290_6044297_6044409_6045984_6046065_6046939_6047142_6048898_6049061_6049277_6049423_6051231_6051427_6052727_6052812_6053050_6053207_6055769_6055862_6056006_6056203_6056643_6056845_6057572_6057708_6059737_6059970_6060445_6060595_6060814_6060937_6062357_6062473_6062558_6062652_6062923_6063034_6069266_6069373_6069635_6069747_6070728_6070855_6070998_6071157_6071841_6071981_6074033_6074172_6074254_6074357_6076430_6076605_6079783_6079997_6081275_6081374_6082344
79969	chr13	+	2610	16	Antisense	novelGene_ENSMUSG00000006191.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	336	12	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGCCGGGCTGATTTGC	NA	False	NA	NA	False	NA	NA	NA	29509283	30039628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_29510211_29538611_29538776_29541480_29541569_29627992_29628056_29658512_29658690_29701389_29701541_29736210_29736381_29809605_29809701_29875570_29875701_29893075_29893125_29901701_29901801_29961199_29961285_30030210_30030326_30033923_30034097_30038883_30038925_30039545
79970	chr6	-	2129	14	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	260.204948808848	2	101	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	-4	True	NA	NA	False	NA	NA	NA	30509723	30482413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487436_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
79971	chr17	+	1244	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	115	3	115	-3	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAGCTGAATTTTGTTTT	3151	False	NA	NA	False	NA	NA	NA	35817029	35821666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
79972	chr17	-	1124	6	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-219	2944	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGCGAAGTCTGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	35821667	35817029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817376_35819997_35820120_35820303_35820434_35820875_35821037_35821184_35821365_35821482
79973	chr17	+	1199	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	65	-86	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1843.54175095114	1	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCAGTGATGCTGTTGA	3101	False	NA	NA	False	NA	NA	NA	35816979	35821583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820424_35820877_35821037_35821184
79974	chr11	-	1655	1	NIC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	577	-1040	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGCTGACAGGACCTCC	NA	False	NA	NA	False	NA	NA	NA	120471629	120469974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120470000_120471600
79975	chr13	-	3156	12	NIC	ENSMUSG00000021569.11	novel	3399	13	NA	NA	23	-9	intron_retention	FALSE	canonical	3	435	junction_5	23.6772373863154	7	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGAATTCTCTTATTT	NA	False	NA	NA	False	NA	NA	NA	74085880	74060585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74061459_74062606_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
79976	chr6	-	2129	8	NNC	ENSMUSG00000000441.18	novel	3968	11	NA	NA	1632	16100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	50	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCGCACTGAAACCTCAGA	NA	False	NA	-118	True	NA	NA	NA	115595647	115578927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_115578969_115586547_115586605_115587499_115587662_115588595_115588899_115590285_115590503_115591535_115591646_115594257_115594403_115594553
79977	chr5	+	2126	1	Intergenic	novelGene_828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAATGAAATGCTGGC	2987	False	NA	NA	False	NA	NA	NA	115028517	115030643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_115028500_115030600
79978	chr12	+	2733	10	NNC	ENSMUSG00000020994.6	novel	3485	9	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	168.304911425295	17	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATGAACAAATATCTTCA	NA	False	NA	NA	False	NA	NA	NA	59113704	59120780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211_59118409_59119121
79979	chr16	+	2409	2	NNC	ENSMUSG00000097576.3	novel	921	2	NA	NA	-4655	-1391	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	20	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAATGCTCCAGGTTCCC	NA	False	NA	NA	False	NA	NA	NA	38267688	38272465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38267977_38270344
79980	chr12	-	3147	6	NIC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	21	intron_retention	FALSE	canonical	3	9641	junction_1	413.326698871486	8	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATAAAAGTGTCATGGAT	NA	False	NA	NA	False	NA	NA	NA	65120718	65109233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65115884_65116724_65116827_65120588
79981	chr2	-	6359	16	Fusion	ENSMUSG00000034075.11_ENSMUSG00000050043.17	novel	4706	12	NA	NA	2	-2310	multi-exon	FALSE	non_canonical	0	0	junction_1	131.210365444198	869	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGCGTTAATTACTTTGAT	NA	False	NA	NA	False	NA	NA	NA	84545378	84508759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_84509004_84515532_84515791_84515945_84516042_84516532_84516628_84517207_84519789_84520193_84521054_84521469_84521583_84522229_84522354_84522676_84522810_84523692_84523785_84524658_84524762_84524913_84525087_84526586_84526745_84532676_84532799_84540661_84541817_84545326
79982	chr11	-	3415	18	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-1	-362	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	156.544321415611	17	122	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTGCCAATTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	79853194	79825140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828607_79832703_79832814_79832952_79833037_79834105_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
79983	chr18	-	2970	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	33	299	33	-299	multi-exon	FALSE	canonical	3	1260	junction_1	0	3894	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTACATTCTCATTAAAGAT	NA	False	NA	NA	False	NA	NA	NA	37777224	37773842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
79984	chr12	-	3487	2	Antisense	novelGene_ENSMUSG00000052812.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	51	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTCCTACATCTGTCAG	NA	False	NA	NA	False	NA	NA	NA	5044235	5028465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_5028589_5040871
79985	chr18	+	5090	5	Genic_Genomic	ENSMUSG00000056682.9	novel	1238	3	NA	NA	-82710	-963	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGGCTTGCGGCGAGCGC	4997	False	NA	NA	False	NA	NA	NA	77719199	77802186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_77723020_77730758_77730889_77740822_77740993_77761595_77762383_77802003
79986	chr4	+	3070	6	NNC	ENSMUSG00000066150.13	novel	3718	5	NA	NA	-11	-729	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	372.109338770206	1179	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAAGTCCCATCCTCATG	NA	False	NA	NA	False	NA	NA	NA	62278952	62309277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_62279081_62303546_62303617_62303728_62303916_62304327_62304401_62306103_62306273_62306834
79987	chr7	-	3644	12	FSM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	3	1081	3	-1081	multi-exon	FALSE	canonical	3	340	junction_6	40.4362573576105	1787	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGTAAAAGAAAACATGG	NA	False	NA	NA	False	NA	NA	NA	46360101	46336612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
79988	chrX	+	3035	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	-39	-743	-32	743	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	679	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTACGTGGATCTGAGTCG	NA	False	NA	NA	False	NA	NA	NA	133618679	133623409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
79989	chr4	+	3902	8	ISM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	42826	3	3128	-2	3prime_fragment	FALSE	canonical	3	1393	junction_4	56.0979464137212	5	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTTTATCCGGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	137364276	137385839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
79990	chr2	+	3871	12	NIC	ENSMUSG00000027330.17	novel	3089	16	NA	NA	-3	-31	intron_retention	FALSE	canonical	3	45	junction_6	16.3767624122547	8	92	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTGGTTCAATAAAGCAC	NA	False	NA	NA	False	NA	NA	NA	131028874	131040384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_131029301_131030025_131030148_131030998_131031051_131033064_131033107_131033269_131033307_131033515_131033856_131034476_131035069_131035158_131035333_131035514_131035608_131036034_131036680_131038896_131039009_131039148
79991	chrX	+	2309	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1488.81685912002	1	98	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487079_100488293_100488397_100488900_100488941_100489724_100489862_100491237
79992	chr4	+	6164	13	NNC	ENSMUSG00000029009.18	novel	2652	12	NA	NA	28	-27	intron_retention	FALSE	non_canonical	0	0	junction_12	34.6228689677149	58	78	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCAATTAAAAAAAAATTGC	NA	False	NA	NA	False	NA	NA	NA	148123561	148143978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_148123867_148126040_148126287_148127881_148128121_148128900_148129012_148132529_148132724_148135828_148136080_148136321_148136457_148136555_148136737_148136970_148137154_148138036_148138139_148139441_148139562_148139829_148140077_148140128
79993	chr10	-	3748	5	FSM	ENSMUSG00000111080.2_ENSMUSG00000019791.13	ENSMUST00000161074.8	875	5	34	-2907	34	-2039	multi-exon	FALSE	canonical	3	129	junction_1	42.7492689995981	1073	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAGAATACCATGCCA	NA	False	NA	NA	False	NA	NA	NA	30494441	30481229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30494198
79994	chr8	-	3937	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	32	-1632	32	752	multi-exon	FALSE	canonical	3	3119	junction_12	186.058007680998	3790	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACGGCAGAGATAGAGTG	NA	False	NA	NA	False	NA	NA	NA	26337690	26305271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
79995	chr3	-	2363	6	FSM	ENSMUSG00000027506.16	ENSMUST00000091354.12	2193	6	-37	-133	-35	133	multi-exon	FALSE	canonical	0	0	junction_1	1287.01132862147	93	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTATCCAATATAATGAT	NA	False	NA	NA	False	NA	NA	NA	9029143	8994524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9028906
79996	chr4	-	2025	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	8	5	8	-5	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	56	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCGGCCCTGGTTGGTTT	8816	False	NA	NA	False	NA	NA	NA	129436498	129409901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
79997	chr17	-	2876	7	NNC	ENSMUSG00000002076.13	novel	2867	8	NA	NA	12	-1	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_6	466.045568825863	9	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACCTTGCAGGGATTGA	NA	False	NA	NA	False	NA	NA	NA	32253470	32163743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32241739_32241844_32252234_32252386_32253246
79998	chr11	+	3159	7	ISM	ENSMUSG00000020458.17	ENSMUST00000102841.8	4060	9	13241	50	-11548	-50	3prime_fragment	FALSE	canonical	3	386	junction_1	197.502250338797	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCATTGTGAACTGTAA	NA	False	NA	NA	False	NA	NA	NA	29657014	29692866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
79999	chr6	+	1668	11	ISM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	7600	160	-1624	33	3prime_fragment	FALSE	canonical	3	5813	junction_5	252.442785597054	1	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATGAGAAGATGGTTGC	4067	False	NA	NA	False	NA	NA	NA	85436095	85445297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
80000	chr11	-	3303	5	Antisense	novelGene_ENSMUSG00000000275.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGGAGGGGCGGCGCCC	NA	False	NA	NA	False	NA	NA	NA	88906419	88890222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_88890907_88895552_88895649_88899942_88900177_88901628_88901798_88904299
80001	chr5	+	4804	23	FSM	ENSMUSG00000039000.9	ENSMUST00000049453.9	5048	23	216	28	12	-28	multi-exon	FALSE	canonical	0	0	junction_10	108.11846884684	248	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGATTGTGTTGGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	29774455	29881062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29774579_29792272_29792327_29794885_29794961_29795807_29795955_29802066_29802183_29803856_29804015_29805638_29805793_29806129_29806351_29807193_29807346_29811904_29812093_29819905_29819993_29824225_29824384_29824552_29824786_29836189_29836295_29837747_29837836_29840628_29840727_29842635_29842769_29851407_29851656_29863207_29863421_29868460_29868650_29868773_29868841_29872911_29873043_29879396
80002	chr1	+	5695	1	Intergenic	novelGene_333	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATGTCCCAACTTACAA	NA	False	NA	NA	False	NA	NA	NA	9006599	9012294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_9006600_9012300
80003	chr5	-	6258	18	NIC	ENSMUSG00000038056.16	novel	6443	18	NA	NA	244	-1	combination_of_known_splicesites	FALSE	canonical	3	17	junction_16	13.6211722028587	100	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGAATGTGCACTGTGTT	NA	False	NA	NA	False	NA	NA	NA	25504829	25476796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_25478757_25480625_25480735_25480897_25480972_25481137_25481255_25486229_25486399_25486670_25486802_25488101_25488239_25489064_25490182_25492048_25492157_25492703_25492844_25493987_25494238_25495487_25495625_25495706_25495886_25497811_25497960_25498104_25498247_25499554_25499720_25500395_25500609_25503867
80004	chrX	+	5454	19	NNC	ENSMUSG00000041718.17	novel	4191	27	NA	NA	192	-107	intron_retention	FALSE	non_canonical	0	0	junction_11	349.382082405742	6	104	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCAGCCCCAGCCGCAGC	NA	False	NA	NA	False	NA	NA	NA	143119681	143152660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_143122011_143122720_143123789_143125391_143125474_143125642_143125806_143127256_143127333_143128607_143128717_143129677_143129743_143130955_143131057_143132287_143132416_143133278_143133526_143134258_143134373_143134772_143134910_143135625_143135759_143136545_143136625_143138579_143138649_143139791_143139958_143146860_143147104_143150894_143150936_143152556
80005	chr16	+	2654	14	FSM	ENSMUSG00000022808.6	ENSMUST00000023502.6	3161	14	-55	562	-53	142	multi-exon	FALSE	canonical	3	473	junction_8	41.4737387501677	742	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTTATGGTTTTGCTC	9228	False	NA	NA	False	NA	NA	NA	33071758	33120077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_33071972_33084628_33084751_33087119_33087256_33088387_33088538_33090025_33090074_33097311_33097368_33101002_33101076_33104779_33104842_33106356_33106423_33108061_33108152_33110468_33110569_33112110_33112257_33115010_33115126_33118800
80006	chr13	+	3208	5	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-29	2333	intron_retention	FALSE	non_canonical	0	0	junction_4	54.5819338242976	197	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAATGACTTCCGGTGGCC	NA	False	NA	NA	False	NA	NA	NA	66261264	66328247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66327508_66327595
80007	chr13	+	4677	9	NNC	ENSMUSG00000035139.15	novel	3328	17	NA	NA	3326	-1889	intron_retention	FALSE	canonical	0	0	junction_4	50.5530352699024	2	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTTCTAACGGGCCTG	8920	False	NA	NA	False	NA	NA	NA	51809158	51834676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824817_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176
80008	chr5	-	1821	2	Genic_Genomic	ENSMUSG00000080935.4	novel	1293	1	NA	NA	350	1001	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAGGGTGAACATGA	2145	False	NA	NA	False	NA	NA	NA	138363464	138361520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_138361708_138361830
80009	chr5	+	4909	19	NIC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	6	-3	intron_retention	FALSE	canonical	3	458	junction_5	43.8489269545074	22	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCCTATACTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	45827266	45857466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45850681_45851093_45851269_45852995_45853158_45853374_45853887_45856182_45856253_45857189
80010	chr18	+	5756	5	NNC	ENSMUSG00000058881.14	novel	924	3	NA	NA	-15073	-43	at_least_one_novel_splicesite	FALSE	canonical	3	187	junction_2	10.2713192920871	217	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTTACCCCTCTTTTAG	NA	False	NA	NA	False	NA	NA	NA	82990859	83023396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_82990974_83004868_83006324_83011194_83011315_83012594_83012663_83019397
80011	chr8	+	989	5	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	25	1182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2814.04187735364	3	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTCATAGGAATTTGT	NA	False	NA	NA	False	NA	NA	NA	57964965	57967425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965040_57965608_57965783_57966095_57966236_57966323_57966499_57966999
80013	chr6	+	3383	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	-3	-373	-3	373	multi-exon	FALSE	canonical	3	130	junction_1	0	383	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAAAAGGTAAGTGTTA	NA	False	NA	NA	False	NA	NA	NA	59185851	59189391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_59186167_59186323
80014	chr8	+	2705	4	NNC	ENSMUSG00000008450.9	novel	518	4	NA	NA	-10	9	intron_retention	FALSE	non_canonical	0	0	junction_3	1494.53679185968	41	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATTGTTTTAATTAGTT	NA	False	NA	NA	False	NA	NA	NA	106587286	106605971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106587338_106602165_106602291_106602985_106604323_106604779
80015	chr4	+	3435	15	NIC	ENSMUSG00000028587.19	novel	3014	17	NA	NA	-4	-2	intron_retention	FALSE	canonical	3	20	junction_10	153.591294396153	1	92	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTGGTATGGTTTGGG	5237	False	NA	NA	False	NA	NA	NA	108436615	108472028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461696_108461805_108462724_108463555_108469247_108469418_108470265_108470354_108471477
80016	chr3	-	2483	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	-97	14	-85	-14	multi-exon	FALSE	canonical	1	178	junction_5	104.738626737206	1	113	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACTTGAAGCCAAGGCT	NA	False	NA	NA	False	NA	NA	NA	95662280	95647301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
80017	chr6	-	4284	6	NIC	ENSMUSG00000030346.17	novel	2233	9	NA	NA	-6	130	intron_retention	FALSE	canonical	3	217	junction_2	21.8027521198586	7	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACCTGCTCCACCGTCCT	5300	False	NA	NA	False	NA	NA	NA	126916515	126900247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_126903481_126904500_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
80018	chr11	+	9625	20	ISM	ENSMUSG00000049470.14	ENSMUST00000060945.12	10099	21	17848	156	51	-156	3prime_fragment	FALSE	canonical	3	76	junction_1	16.4075518049673	202	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAATGTACAC	NA	False	NA	NA	False	NA	NA	NA	53259507	53312501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_53259614_53263104_53263885_53266415_53266461_53271412_53271500_53280581_53280619_53283597_53283644_53287365_53287421_53288658_53288697_53289063_53289227_53290415_53291334_53293304_53293394_53295182_53295430_53297407_53297503_53298706_53298771_53298883_53299021_53299225_53299298_53300094_53300189_53301742_53301787_53302662_53302884_53306214
80019	chr7	+	2153	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-5	460	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	108.090240077446	103	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGTAAATATATCCCATG	9993	False	NA	NA	False	NA	NA	NA	42863457	42876726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42870265_42870526_42872998_42873126_42873324_42873386_42875135
80020	chr7	+	5549	29	FSM	ENSMUSG00000059263.10	ENSMUST00000215510.2	4697	29	39	-891	0	-10	multi-exon	FALSE	canonical	3	115	junction_12	65.7666231799216	40	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTGCTGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	111622751	111710581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_111622954_111652423_111652628_111654048_111654163_111655681_111655821_111658178_111658276_111662452_111662599_111663571_111663652_111666291_111666442_111673678_111673775_111673863_111674017_111676998_111677167_111679378_111679439_111681636_111681769_111682294_111682372_111683063_111683120_111685201_111685315_111686207_111686313_111686972_111687181_111688731_111688848_111690611_111690732_111691912_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
80021	chr5	+	2772	5	NIC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	-22	1	intron_retention	FALSE	canonical	3	460	junction_1	20.6518764280634	15	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTCATACAGACGTG	NA	False	NA	NA	False	NA	NA	NA	100187880	100216620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_100188162_100206998_100207101_100208832_100210135_100211617_100211742_100215657
80022	chr4	-	1800	6	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	21230	8	-49	-8	3prime_fragment	FALSE	canonical	3	810	junction_4	75.97262664934	51	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122758474	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373
80023	chr2	-	6211	12	NIC	ENSMUSG00000027610.18	novel	1963	13	NA	NA	0	-2	intron_retention	FALSE	canonical	3	779	junction_11	112.062482571109	31	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACTCATTGTTTCATGT	8446	False	NA	NA	False	NA	NA	NA	155434634	155405102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
80024	chr2	+	3606	28	Antisense	novelGene_ENSMUSG00000027185.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	107	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTACACAGCTGAGCT	NA	False	NA	NA	False	NA	NA	NA	103551619	103591485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103552320_103555439_103555510_103556011_103556108_103556464_103556584_103557059_103557236_103558149_103558259_103558344_103558442_103560592_103560640_103560852_103560988_103561650_103561769_103562317_103562395_103562500_103562599_103563261_103563383_103564090_103564182_103564714_103564834_103565195_103565332_103570088_103570237_103573403_103573491_103573611_103573701_103574630_103574767_103578325_103578431_103578529_103578643_103580560_103580628_103582923_103583047_103584402_103584572_103587527_103587604_103588013_103588094_103591381
80025	chr3	+	3693	8	FSM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	-231	12	-218	-12	multi-exon	FALSE	canonical	3	56	junction_2	49.6608908662808	4	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGAAAAAGAAATTAAGACT	8561	False	NA	NA	False	NA	NA	NA	30656561	30672638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
80026	chr11	+	3732	4	Antisense	novelGene_ENSMUSG00000020303.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	231	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGAATGAAGGAGTCGAG	NA	False	NA	NA	False	NA	NA	NA	31308023	31320124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_31310528_31315330_31315543_31317724_31318326_31319709
80027	chr16	+	2738	6	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	15340	57	-6220	0	3prime_fragment	FALSE	canonical	3	275	junction_3	16.2061716639063	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	NA	False	NA	NA	NA	36529679	36547109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
80028	chr14	+	1444	8	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-45847	88430	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9.43289943955381	1	55	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGGATCTATCCATGCA	NA	False	NA	NA	False	NA	NA	NA	43735185	43877100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_43735407_43769911_43770400_43778540_43778627_43779656_43779795_43781967_43782123_43783111_43783244_43783926_43784109_43877058
80029	chr14	+	2233	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4478	355	intron_retention	FALSE	canonical	3	21	junction_4	63.0672040146241	232	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAGACATGTATGCTTC	NA	False	NA	NA	False	NA	NA	NA	41761473	41826133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
80030	chr11	+	5721	7	FSM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	28	1	0	-1	multi-exon	FALSE	canonical	3	184	junction_6	15.5527775297176	177	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCTTGTGATGAATTC	4773	False	NA	NA	False	NA	NA	NA	105927725	105950149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_105928088_105937516_105937676_105938462_105938575_105938968_105939088_105942582_105942793_105944556_105944675_105945508
80031	chr1	-	1824	15	Antisense	novelGene_ENSMUSG00000089093.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	5	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACCACGTTGCTCAGCC	NA	False	NA	NA	False	NA	NA	NA	59749811	59724201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_59724384_59729642_59729722_59731495_59731546_59731765_59731885_59735133_59735257_59737479_59737616_59740040_59740109_59741969_59742106_59743220_59743366_59743777_59743908_59744749_59744912_59745786_59745926_59746160_59746222_59748159_59748293_59749650
80033	chr3	+	4634	15	FSM	ENSMUSG00000028082.15	ENSMUST00000107664.3	6414	15	250	1530	194	-118	multi-exon	FALSE	canonical	3	130	junction_2	13.4262915997847	96	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAGAAAATTTGGGCCTG	NA	False	NA	NA	False	NA	NA	NA	85991990	86036299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_85992665_86000996_86001105_86005453_86005567_86010196_86010259_86011389_86011655_86014276_86014346_86014518_86014660_86020412_86020486_86022093_86022225_86024125_86024185_86027836_86028040_86028440_86028494_86030452_86030640_86030992_86031091_86033901
80034	chr14	+	2662	9	NIC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	-11	-7	intron_retention	FALSE	canonical	3	2290	junction_5	172.591099133182	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCAATGAAGTCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	14296824	14303770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_14296883_14296955_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
80036	chr1	+	8147	20	FSM	ENSMUSG00000033257.15	ENSMUST00000042125.15	10019	20	-37	1909	-37	-11	multi-exon	FALSE	canonical	3	108	junction_15	14.6750584571313	171	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAACTTTTTTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	74700866	74740980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74701049_74712002_74712170_74718056_74719623_74720458_74720569_74720917_74720982_74724477_74724603_74725018_74725130_74725475_74725553_74726362_74726555_74726636_74726720_74726881_74727011_74727322_74727446_74727725_74727825_74728481_74728617_74729118_74729266_74734866_74734970_74735563_74735775_74735900_74735972_74736337_74736409_74736599
80037	chrX	-	3630	14	ISM	ENSMUSG00000031392.19	ENSMUST00000033769.15	2890	15	380	-1044	-25	-1	3prime_fragment	FALSE	canonical	3	23	junction_4	123.456913404862	355	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGCCAACCTATATGCCT	NA	False	NA	NA	False	NA	NA	NA	73067139	73057532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_73059108_73060153_73060304_73060735_73061118_73061506_73061624_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73065856_73066078_73066271_73066454_73066559_73066671_73066804_73066971
80038	chr2	-	2407	2	Antisense	novelGene_ENSMUSG00000023393.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATTTCTTTGGTCTGCTG	6240	False	NA	NA	False	NA	NA	NA	180380555	180377926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180378574_180378795
80039	chr18	-	3573	9	FSM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	-352	-930	-323	2	multi-exon	FALSE	canonical	3	72	junction_5	54.5590276672889	135	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTGTTACGTCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	70605903	70585280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
80040	chr18	+	4773	1	ISM	ENSMUSG00000043991.6	ENSMUST00000051301.6	5957	2	6657	9	6657	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	194	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTACTCACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	36420806	36425579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_36420800_36425600
80041	chr2	+	7025	12	ISM	ENSMUSG00000039046.16	ENSMUST00000042503.9	4340	14	41740	-2885	-26449	-11	3prime_fragment	FALSE	canonical	3	91	junction_1	20.2631449020707	93	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAACCTTCTGCGATGCA	NA	False	NA	NA	False	NA	NA	NA	6399283	6451190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_6399367_6405090_6405131_6413739_6413821_6419743_6419852_6425713_6425824_6428232_6428282_6429082_6429204_6431705_6431801_6432362_6432429_6432522_6432623_6435236_6435390_6445171
80042	chr9	-	4781	3	NIC	ENSMUSG00000004771.13	novel	2336	5	NA	NA	2	-10	intron_retention	FALSE	canonical	3	952	junction_2	28	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTCCCAGTGTGGTGAG	NA	False	NA	NA	False	NA	NA	NA	64645038	64622590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64624271_64632783_64635712_64644865
80043	chr2	+	3447	31	NNC	ENSMUSG00000027433.6	novel	3434	30	NA	NA	51	-24	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_16	277.564248818579	13	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAAGCTAAACTTTA	NA	False	NA	NA	False	NA	NA	NA	146854966	146919896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146881140_146881229_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
80044	chrX	-	2887	3	NIC	ENSMUSG00000025283.16	novel	1352	6	NA	NA	-49	-10	intron_retention	FALSE	canonical	3	1236	junction_2	39.5	1	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATTCAGCCTGAGCAT	NA	False	NA	NA	False	NA	NA	NA	153999390	153996137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_153998681_153998780_153998833_153999098
80046	chr8	-	1462	11	NNC	ENSMUSG00000031711.8	novel	1675	10	NA	NA	-16	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.384972834162	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAGTACTTTTGGTACT	NA	False	NA	NA	False	NA	NA	NA	83500805	83490254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_83490669_83490892_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
80047	chr15	-	2681	10	NIC	ENSMUSG00000022329.16	novel	2914	11	NA	NA	22	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	87.7607578436054	8	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCGTTGTTGTTATTGT	NA	False	NA	NA	False	NA	NA	NA	35155930	34875641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_34876967_34945151_34945328_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
80048	chr4	-	2783	13	NNC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-46	-15	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	255.833876220922	1263	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGATATTTAATAACTATC	-26	True	NA	NA	False	NA	NA	NA	48279604	48193337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48238238_48238367_48241295_48241336_48243476_48243550_48279383
80049	chr12	+	3942	3	NNC	ENSMUSG00000079104.5	novel	1720	2	NA	NA	28	2286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	158.5	2	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTATGTTTTGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	57277225	57288954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_57277398_57285148_57285299_57285334
80050	chr7	+	4406	4	NNC	ENSMUSG00000097277.8	novel	725	4	NA	NA	22	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	46.3776766223675	8	66	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATCAAAATTTTTTGGG	NA	False	NA	NA	False	NA	NA	NA	81173340	81181239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_81175274_81176677_81178689_81179094_81179276_81180958
80051	chr6	+	8374	8	NIC	ENSMUSG00000029823.17	novel	2405	11	NA	NA	5095	-11	intron_retention	FALSE	canonical	3	38	junction_7	38.2062074238505	160	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACCAACATACTGAAACAG	6392	False	NA	NA	False	NA	NA	NA	38541244	38586351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38580211_38580404_38585087
80052	chr17	+	2422	16	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-1	26	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	313.736081585923	3	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTGGGCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	32255401	32279573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274153_32274290_32274884_32274972_32275529_32276231_32276759_32276840_32277497_32277639_32278247_32278312_32279321
80053	chr7	-	2551	1	NIC	ENSMUSG00000052833.10	novel	1254	10	NA	NA	39002	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	16063525	16060974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_16061000_16063500
80054	chr2	+	2472	14	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-4	4082	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	123.859961007698	408	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATCTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	162859406	162892143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122_162888175_162892022
80055	chr15	+	3809	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	-2	-1975	-2	1975	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	371	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTTGTTCTGGTTTCA	NA	False	NA	NA	False	NA	NA	NA	5215038	5249792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
80056	chr5	+	4144	13	NNC	ENSMUSG00000014932.16	novel	1403	5	NA	NA	6107	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	282.940806530271	5	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTATGTATTCTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	32774785	32844399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_32774875_32793061_32793187_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
80057	chr13	+	3215	5	NNC	ENSMUSG00000042348.11	novel	3364	5	NA	NA	21	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	188.06182494063	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCGTTTCCTGACTGACT	NA	False	NA	NA	False	NA	NA	NA	113931061	114293993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_113931233_114058782_114058928_114104117_114104327_114291239_114291977_114292040
80058	chr1	+	2605	10	NNC	ENSMUSG00000033813.16	novel	2547	10	NA	NA	-63	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	756.175872808227	2	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATGTTTTTTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	4927973	4968130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962139_4962293_4963639_4963791_4965165_4965229_4966578
80059	chrX	-	1050	9	ISM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	5109	5	-81	-5	3prime_fragment	FALSE	canonical	3	1120	junction_8	118.906935773318	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72825394	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282
80060	chr7	-	1281	9	ISM	ENSMUSG00000059119.10	ENSMUST00000209098.2	2281	15	14423	477	1584	-477	3prime_fragment	FALSE	canonical	3	471	junction_1	190.288432386207	2	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACTTCACTGTCCTCCC	6419	False	NA	NA	False	NA	NA	NA	143088142	143067801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022
80061	chr6	-	2379	14	Genic_Genomic	ENSMUSG00000108466.2	novel	626	1	NA	NA	-45665	-297	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	25	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTACAGCCTAGCTGCGT	NA	False	NA	NA	False	NA	NA	NA	71854359	71808365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808493_71823262_71823459_71828753_71828861_71829742_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71845786_71848408_71848540_71849774_71849902_71851295_71851910_71854230
80062	chr1	+	2972	1	NIC	ENSMUSG00000013275.10	novel	4697	11	NA	NA	38	710	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTAAGACCTGAGGAGG	5240	False	NA	NA	False	NA	NA	NA	131755752	131758724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_131755800_131758700
80063	chr10	+	1780	5	NNC	ENSMUSG00000006498.17	novel	2108	4	NA	NA	-842	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	732.903472498255	2	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	2133	False	NA	NA	False	NA	NA	NA	79696729	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79696795_79698241_79698376_79698486_79698704_79698811_79698890_79698978
80064	chr8	-	2317	15	NNC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	124.314467117443	17	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTGCATTTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	13154842	13127192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135337_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145876_13145991_13146093_13147613_13147669_13148562_13148637_13150324_13150415_13154774
80065	chr19	-	6982	1	FSM	ENSMUSG00000092341.4	ENSMUST00000172812.3	6983	1	1	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2600	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGCTTCTTTGTGCAT	4062	False	NA	-87	True	NA	NA	NA	5852699	5845717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5845700_5852700
80066	chr17	+	4483	3	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	76	1749	intron_retention	FALSE	non_canonical	0	0	junction_2	1512	1	207	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAATTAAATGTTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	6697586	6705444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6697638_6699278_6699321_6701054
80067	chr5	-	8049	23	FSM	ENSMUSG00000029238.12	ENSMUST00000202651.4	9744	23	60	1635	22	674	multi-exon	FALSE	canonical	3	23	junction_22	10.4912399506674	78	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTCTGTTGCCCATTT	NA	False	NA	NA	False	NA	NA	NA	76452579	76359349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_76364726_76374779_76375075_76377204_76377411_76378011_76378207_76379242_76379396_76383612_76383703_76384128_76384230_76384867_76385010_76388717_76388794_76389716_76389865_76390628_76390736_76390925_76391009_76393042_76393162_76393268_76393383_76396188_76396310_76402220_76402311_76410521_76410614_76413637_76413787_76414203_76414264_76414646_76414737_76421805_76421891_76451270_76451350_76452501
80068	chr11	-	3328	22	Fusion	ENSMUSG00000097328.8_ENSMUSG00000005204.13	novel	2313	11	NA	NA	-9694	0	multi-exon	FALSE	canonical	2	2	junction_21	463.122542958037	28	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	9593	False	NA	NA	False	NA	NA	NA	69596369	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69574679_69574819_69575043_69575163_69575310_69575359_69575485_69575565_69575854_69575957_69577782_69577918_69578077_69578203_69584331_69584368_69584446_69584501_69585575_69585652_69586219_69586268_69596131
80071	chr16	+	3177	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	-55	0	-55	0	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	856	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGCAGAGTGGCTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	31247510	31277719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
80072	chr8	+	3783	5	NNC	ENSMUSG00000005161.16	novel	993	5	NA	NA	40	-67	intron_retention	FALSE	non_canonical	0	0	junction_4	1642.59375683703	36	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGGGTTTTTACATTGG	NA	False	NA	NA	False	NA	NA	NA	85696279	85701396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85700093_85700161
80073	chr15	+	4505	16	NNC	ENSMUSG00000022307.17	novel	684	4	NA	NA	-646	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	99.4930259979172	209	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATAAATGCAAATGAGTT	NA	False	NA	NA	False	NA	NA	NA	41310231	41724430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_41310341_41398965_41399124_41516860_41517058_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
80074	chr2	-	6062	15	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-9037	-160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.4200810109934	958	93	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAAACTAGTTTCTATGT	NA	False	NA	NA	False	NA	NA	NA	29687551	29664855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29666232_29666386_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514_29678368_29678446_29678580_29679913_29680012_29680468_29680572_29685392_29685519_29685943_29686042_29686419
80075	chr11	+	2742	4	FSM	ENSMUSG00000040599.14	ENSMUST00000164220.8	1416	4	-26	-1300	-26	-5	multi-exon	FALSE	canonical	3	11	junction_1	46.3057471835	153	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTTATGTATTATTGC	NA	False	NA	NA	False	NA	NA	NA	70910410	70918192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70910550_70910831_70911016_70915375_70915538_70915935
80076	chr12	+	2651	6	NNC	ENSMUSG00000021255.18	novel	1344	6	NA	NA	242	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	264.780210740909	1	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86517132	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561210_86566487
80077	chr9	+	9749	21	ISM	ENSMUSG00000041444.15	ENSMUST00000174641.8	13568	22	13439	3698	5	503	3prime_fragment	TRUE	canonical	3	20	junction_18	5.96322060635023	61	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCAGGTTAAAGCAGAC	451	False	NA	NA	False	NA	NA	NA	32040870	32176044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_32040975_32063217_32063310_32064335_32064421_32081385_32081473_32093137_32093276_32097624_32097718_32098929_32099053_32101279_32101358_32119479_32119562_32150557_32150708_32156447_32156551_32157213_32157359_32157742_32157826_32158403_32158512_32158781_32158928_32159675_32159872_32161937_32162084_32165362_32165435_32166469_32167355_32168008_32168995_32170197
80079	chr11	+	7426	41	NIC	ENSMUSG00000000631.21	novel	7513	42	NA	NA	13	-7	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	17.6113422259634	113	19	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGGCCACAAGTTTCCCT	NA	False	NA	NA	False	NA	NA	NA	77654139	77756799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_77654206_77668060_77669141_77708444_77708533_77708724_77708832_77708927_77709105_77709406_77709621_77709736_77709880_77710802_77710904_77711623_77711688_77711867_77712013_77714101_77714273_77714587_77714679_77714918_77715112_77715928_77716010_77718361_77718504_77718616_77718777_77720002_77720190_77720445_77720690_77723219_77723330_77727242_77727309_77731506_77731636_77732273_77732418_77732744_77732835_77732973_77733094_77733282_77733395_77733929_77734058_77734342_77734498_77736221_77736346_77736433_77736635_77737197_77737309_77737716_77737822_77738117_77738265_77738750_77738865_77740195_77740313_77741047_77741132_77741571_77741710_77744042_77744229_77744577_77744718_77745503_77745549_77748548_77748672_77755516
80080	chr16	-	1486	14	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	1	31	junction_4	579.281844719219	673	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAGCAAAAGCTACACTA	9195	False	NA	NA	False	NA	NA	NA	91525496	91486405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489486_91489593_91489731_91489816_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
80081	chr4	-	3916	9	Antisense	novelGene_ENSMUSG00000099202.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	97	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGATTTCCCCGCCCCGGGA	NA	False	NA	NA	False	NA	NA	NA	132925687	132857873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_132858038_132903749_132903924_132912279_132912413_132912907_132913061_132916385_132916506_132917438_132917565_132919410_132919455_132921876_132922217_132923025
80083	chr4	-	4110	10	Antisense	novelGene_ENSMUSG00000099202.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	46	78	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCACACCCCGCCAACC	NA	False	NA	NA	False	NA	NA	NA	132925679	132857852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_132858038_132903749_132903924_132912279_132912413_132912907_132913061_132916385_132916506_132917438_132917570_132919414_132919567_132921701_132921976_132922083_132922218_132923025
80084	chr4	+	3445	9	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	31	1480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	211.413952649772	1	124	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGGTATTGGCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	132857970	132925295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916469_132919415_132919572_132921706_132921978_132922078_132922219_132923027
80085	chr4	+	2348	4	NNC	ENSMUSG00000028868.14	novel	2236	8	NA	NA	3086	999	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	219.291789378647	1	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGAGAGTGCAATCATG	1266	False	NA	NA	False	NA	NA	NA	132919414	132924814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132919572_132921706_132921942_132922049_132922219_132923027
80086	chr4	-	3690	9	Antisense	novelGene_ENSMUSG00000099202.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	151	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGAGAACGCTCCAGCCT	NA	False	NA	NA	False	NA	NA	NA	132925668	132857981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_132858038_132903749_132903920_132912275_132912413_132912907_132913061_132916385_132916506_132917438_132917567_132919408_132919567_132922091_132922217_132923025
80087	chr4	-	2244	7	Antisense	novelGene_ENSMUSG00000099202.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGACGCAGCCACACCCCG	NA	False	NA	NA	False	NA	NA	NA	132924128	132857858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_132858041_132903753_132903920_132912274_132912413_132912907_132913063_132916385_132916529_132921858_132922228_132923037
80088	chrX	+	6361	7	Antisense	novelGene_ENSMUSG00000045180.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	101	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTTCCATTCTATGGTC	NA	False	NA	NA	False	NA	NA	NA	151392511	151444048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_151395791_151396390_151396666_151400190_151400351_151401895_151402443_151406121_151406334_151440421_151440523_151442261
80089	chr14	-	3201	9	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	-77	1	intron_retention	FALSE	canonical	3	157	junction_8	1271.17308026877	48	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTAGAAGCTGGTGTGTA	8648	False	NA	NA	False	NA	NA	NA	52341562	52311000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52336002_52341345
80090	chr11	-	2792	11	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-34376	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	209.583491716309	24	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCATGAGCTGTGTTCCGTG	NA	False	NA	NA	False	NA	NA	NA	113490981	113135683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113482607_113482759_113490939
80091	chr4	+	2831	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	-139	1141	-139	-1141	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	2460	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTCTGCCCCAACATGC	NA	False	NA	NA	False	NA	NA	NA	129229348	129242523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
80092	chr16	-	2766	14	FSM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	3	411	0	-411	multi-exon	FALSE	canonical	2	298	junction_4	64.525303508774	669	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTCCAGACACATATC	NA	False	NA	NA	False	NA	NA	NA	30406407	30379722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
80093	chr11	-	3093	3	NIC	ENSMUSG00000051232.14	novel	1347	6	NA	NA	35	-2	intron_retention	FALSE	canonical	3	479	junction_2	52	58	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATCTTTGGTCTTA	1666	False	NA	NA	False	NA	NA	NA	78402963	78397882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_78398632_78399144_78401248_78402722
80095	chr6	-	7074	22	NIC	ENSMUSG00000045095.17	novel	4598	23	NA	NA	10	-14	combination_of_known_junctions	TRUE	canonical	0	0	junction_21	10.1806806503004	76	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATTCCATAACCACTATT	2675	False	NA	NA	False	NA	NA	NA	93890661	93652449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_93655984_93659932_93660072_93662534_93662679_93663557_93663619_93663762_93663857_93670988_93671193_93674174_93674469_93676596_93676790_93678270_93678363_93684984_93685202_93694220_93694253_93722414_93723036_93724172_93724356_93731994_93732088_93734635_93734746_93737688_93737747_93746488_93746525_93750587_93750671_93762425_93762628_93769327_93769535_93792686_93792807_93890304
80096	chr5	-	5019	2	NNC	ENSMUSG00000029463.6	novel	1388	7	NA	NA	7401	10171	intron_retention	FALSE	non_canonical	0	0	junction_1	0	20	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGCCCACTTCTTCCGC	NA	False	NA	NA	False	NA	NA	NA	122503026	122492471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122492539_122498074
80097	chr17	+	5579	16	FSM	ENSMUSG00000024140.11	ENSMUST00000024954.11	5516	16	-74	11	-74	-11	multi-exon	FALSE	canonical	3	64	junction_3	13.5078577954545	126	22	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGATCCTATCCTGCTCG	NA	False	NA	NA	False	NA	NA	NA	87061053	87140827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_87061737_87104543_87104735_87112620_87112773_87113184_87113270_87116785_87116905_87117011_87117218_87125782_87125890_87131107_87131256_87131834_87132050_87133007_87133199_87133932_87134044_87134919_87135426_87136117_87136245_87136413_87136529_87136737_87136912_87138378
80098	chr6	-	1889	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	-57	-170	-8	-22	multi-exon	FALSE	canonical	3	287	junction_2	2567.02803044511	818	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAAATATACCTTACTA	NA	False	NA	NA	False	NA	NA	NA	51446882	51437933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
80099	chr12	-	7664	32	NNC	ENSMUSG00000021120.12	novel	2339	4	NA	NA	-53	51322	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	34.1693462736101	386	20	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGAGGCCCCCGGGTCTCC	NA	False	NA	NA	False	NA	NA	NA	79136478	79076115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_79076190_79087260_79087435_79095963_79096024_79097032_79097186_79100365_79100452_79101260_79101343_79101431_79102188_79108744_79108827_79109307_79109400_79110891_79111047_79111222_79111349_79112433_79112544_79113392_79113480_79113845_79114008_79114733_79114815_79115143_79115327_79115790_79115899_79116674_79116784_79117554_79117737_79118068_79118167_79119507_79119680_79120164_79120326_79121360_79121468_79122176_79122312_79123222_79123366_79123476_79123605_79125415_79125507_79125731_79125873_79126203_79129271_79130389_79130474_79132420_79132631_79136213
80100	chr7	-	1926	14	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	40	45	intron_retention	FALSE	canonical	3	1951	junction_13	209.501917066259	5937	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAAGCCTTTATTGGG	9222	False	NA	NA	False	NA	NA	NA	45084007	45071275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
80101	chr16	-	2690	6	FSM	ENSMUSG00000004071.14	ENSMUST00000118703.8	2554	6	5	-141	5	141	multi-exon	FALSE	canonical	3	30	junction_5	186.698259231306	562	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGAAGGTGCTAGGAAG	NA	False	NA	NA	False	NA	NA	NA	4608151	4584563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4608015
80103	chr8	-	700	3	Antisense	novelGene_ENSMUSG00000031490.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCACGCCATCGCCGA	NA	False	NA	NA	False	NA	NA	NA	27765569	27750520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_27750576_27763347_27763529_27765105
80104	chr2	-	2808	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-45	331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.51247640718	766	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAACAACCAAAAAACCCAAA	NA	False	NA	NA	False	NA	NA	NA	165740981	165668717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
80106	chr11	-	3128	2	NNC	ENSMUSG00000018481.10	novel	6463	13	NA	NA	43571	-738	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGAATGTTTTAGGCA	1096	False	NA	NA	False	NA	NA	NA	85082385	85078825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_85080943_85081374
80107	chr3	-	4867	5	NIC	ENSMUSG00000027506.16	novel	6317	6	NA	NA	-7	166	intron_retention	FALSE	canonical	3	1409	junction_1	611.345391329648	8	102	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGAAACTACCAGCTACA	NA	False	NA	NA	False	NA	NA	NA	9069545	8995681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
80110	chr4	-	1718	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-541	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	342.287709439088	29	45	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCATGCTGGTGGGTTT	9516	False	NA	NA	False	NA	NA	NA	129229704	129203308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229543
80111	chr3	-	2380	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	-8	-251	-8	251	multi-exon	FALSE	canonical	3	466	junction_6	145.639680948108	1739	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATGAACTTAGAGGGAGT	NA	False	NA	NA	False	NA	NA	NA	127347006	127330111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
80112	chr4	-	1724	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	41	0	41	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	1	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	40	False	NA	NA	False	NA	NA	NA	41098142	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
80113	chr7	-	3124	24	NNC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	90	88	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	295.788037836272	48	20	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTTCCCTTGGGGAGTT	7332	False	NA	NA	False	NA	NA	NA	126101182	126091236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126091354_126091620_126091781_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
80114	chr11	-	3913	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	-7	21	-7	-21	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	621	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTATCTTGGGGAGGAA	9451	False	NA	NA	False	NA	NA	NA	6150422	6055711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
80115	chr13	+	3392	8	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	-85657	312263	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	63.2636207807118	1	161	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	61866413	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61866586_61974122_61974263_61987297_61987915_62005782_62005910_62006094_62006156_62007517_62009056_62009228_62009854_62321640
80116	chr6	-	1967	2	ISM	ENSMUSG00000030057.16	ENSMUST00000204890.3	1614	5	5017	0	304	0	intron_retention	FALSE	canonical	3	11807	junction_1	0	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	3523	False	NA	NA	False	NA	NA	NA	87822995	87820063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87821139_87822103
80117	chr2	-	2069	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	-32	4	-32	-4	multi-exon	FALSE	canonical	3	2167	junction_3	78.0555357848927	4004	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGGGCAGGCTGTGCCCT	9286	False	NA	NA	False	NA	NA	NA	167474047	167449561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
80118	chr15	+	3799	9	FSM	ENSMUSG00000036167.17	ENSMUST00000068457.15	3351	9	-38	-410	12	398	multi-exon	FALSE	canonical	3	14	junction_4	61.4527257328754	144	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAATTCGTCTCCTCTCGT	NA	False	NA	NA	False	NA	NA	NA	93296242	93389789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
80119	chr8	+	2541	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-149	2957	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	426	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCTGTAGCTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	14938854	14948016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
80120	chr17	-	2307	17	FSM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	-7	-99	-7	99	multi-exon	TRUE	canonical	3	248	junction_10	48.8427003246135	782	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACCCACTCACTGCCTA	NA	False	NA	NA	False	NA	NA	NA	71833859	71802995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
80121	chr3	-	3593	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108053.9	2611	7	83	-1065	22	630	multi-exon	FALSE	canonical	3	85	junction_5	57.3626378596925	317	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAAATTCTGTGTATGGG	NA	False	NA	NA	False	NA	NA	NA	51184913	51162020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51184625
80122	chr4	-	3595	3	NNC	ENSMUSG00000003032.9	novel	3029	5	NA	NA	865	254	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	570	16	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACATTTCCAGGTAGGTG	2421	False	NA	NA	False	NA	NA	NA	55530905	55526888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_55528685_55528990_55529883_55529998
80123	chr6	-	2251	1	Genic_Genomic	ENSMUSG00000030061.17	novel	NA	NA	NA	NA	12134	561	mono-exon	FALSE	NA	NA	NA	NA	NA	2	75	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTATTTACATTTCA	1231	False	NA	NA	False	NA	NA	NA	97162320	97160069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_97160100_97162300
80126	chr14	-	3156	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5197	210	intron_retention	FALSE	canonical	3	300	junction_3	34.2669260690571	2805	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAACTTGTTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	59608116	59584645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
80127	chr1	-	5565	29	NIC	ENSMUSG00000040648.16	novel	6239	31	NA	NA	321	-116	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	63.8298419588345	197	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGTGACTTGAATTTAA	9155	False	NA	NA	False	NA	NA	NA	97697815	97633888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_97635556_97639447_97639574_97640728_97640870_97645166_97645287_97647558_97647632_97651394_97651560_97654913_97655031_97655119_97655228_97656642_97656758_97657635_97657764_97661610_97661835_97662691_97662834_97668186_97668370_97668548_97668671_97668794_97668921_97671781_97671868_97672887_97672998_97673119_97673196_97674142_97674230_97675271_97675374_97677266_97677389_97678291_97678454_97680428_97680531_97682779_97682935_97683610_97683697_97684568_97684660_97686893_97687090_97689149_97689547_97697579
80128	chr4	-	2852	21	FSM	ENSMUSG00000028559.18	ENSMUST00000084366.13	3134	21	2	280	2	190	multi-exon	FALSE	canonical	1	25	junction_18	113.002776514562	112	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCAGTTTGGTGCTAT	NA	False	NA	NA	False	NA	NA	NA	108975217	108918621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
80129	chr6	+	3078	16	FSM	ENSMUSG00000029916.12	ENSMUST00000031977.12	2531	16	249	-796	-64	796	multi-exon	FALSE	canonical	3	517	junction_15	44.4424221762146	758	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGATCTGCAGAGACCTG	NA	False	NA	NA	False	NA	NA	NA	40302354	40374492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
80130	chr9	+	4689	17	Antisense	novelGene_ENSMUSG00002076749.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	113	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTCTTCCCAGCGGCAAG	18	False	NA	NA	False	NA	NA	NA	111057383	111100678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_111060121_111062402_111062455_111064974_111065084_111068790_111068940_111070292_111070678_111076319_111076472_111078287_111078382_111081931_111082047_111084697_111084786_111085161_111085201_111085947_111086084_111086469_111086557_111087553_111087630_111090546_111090617_111093926_111094034_111097285_111097380_111100479
80133	chr2	+	3366	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	140	-438	140	438	multi-exon	FALSE	canonical	3	197	junction_10	19.1619994317457	473	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTAAAGATTCAGACT	5642	False	NA	NA	False	NA	NA	NA	91095458	91107714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
80134	chr14	+	4330	26	ISM	ENSMUSG00000025555.15	ENSMUST00000026635.8	4885	27	66588	30	73	-30	3prime_fragment	FALSE	canonical	3	58	junction_12	25.1668353195232	177	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGCACATACAAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	121339563	121521126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_121339595_121444665_121444771_121456788_121456832_121460051_121460131_121468040_121468139_121471141_121471257_121472477_121472626_121474547_121474644_121476039_121476204_121477385_121477455_121479798_121479875_121480764_121481021_121492819_121493008_121494128_121494219_121495244_121495379_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
80135	chr4	-	1690	1	NIC	ENSMUSG00000037443.14	novel	3893	14	NA	NA	-10	-5366	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAACAGCTGCACTCCCA	8669	False	NA	NA	False	NA	NA	NA	133866598	133864908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_133864900_133866600
80136	chr2	+	1013	1	FSM	ENSMUSG00000062846.8	ENSMUST00000121302.2	477	1	-24	-512	-24	512	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGTTAAAAAAAAAAAAAAAA	5974	False	NA	NA	False	NA	NA	NA	157743431	157744444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157743400_157744400
80137	chr12	+	2141	16	NNC	ENSMUSG00000112449.2	novel	3646	16	NA	NA	10	-1233	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	244.934240608009	1129	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	2630	False	NA	NA	False	NA	NA	NA	55202164	55235125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55202370_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
80138	chr2	+	3275	1	Genic_Genomic	ENSMUSG00000014873.16	novel	NA	NA	NA	NA	1741	2260	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCTTGGGATACCGTGA	NA	False	NA	NA	False	NA	NA	NA	26809180	26812455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_26809200_26812500
80139	chr11	-	3011	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_13	127.824121030265	6	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAGCGTGGTATTTAA	NA	False	NA	NA	False	NA	NA	NA	57409430	57373822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57408930
80140	chr7	-	3482	3	NNC	ENSMUSG00000043262.17	novel	4616	12	NA	NA	27653	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	42	2	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGACTATCTGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	46578132	46572969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_46576237_46577168_46577293_46578041
80141	chr10	-	3376	6	NNC	ENSMUSG00000062981.6	novel	661	6	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	1564.45921647066	15	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAGTGTGTATTTCA	NA	False	NA	NA	False	NA	NA	NA	95337789	95316669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_95316840_95326107_95328311_95328800_95329578_95332685_95332750_95336244_95336385_95337767
80142	chr1	-	3271	11	Antisense	novelGene_ENSMUSG00000103711.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	69	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGCGGAAGTGTGCCCT	4429	False	NA	NA	False	NA	NA	NA	171247919	171238895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171239006_171242001_171242097_171243071_171243121_171243280_171243395_171243698_171243808_171244380_171244572_171244807_171244898_171245040_171245098_171245206_171245430_171245596_171247667_171247756
80143	chr14	-	3134	6	NIC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	-3	-25	intron_retention	FALSE	canonical	3	3717	junction_3	323.099736923446	30	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGTCATAATTCCAACA	NA	False	NA	NA	False	NA	NA	NA	31923839	31902143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_31902628_31911100_31911212_31913298_31915445_31915810_31915905_31920925_31920985_31923599
80144	chrX	+	3408	26	NNC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	345	-6673	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	50.2829434301533	1	139	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCACAAGAAATATCTTCC	NA	False	NA	NA	False	NA	NA	NA	99669687	99761583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741162_99747660_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542
80145	chrX	-	1886	8	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCGACCGCCGGAAACGAG	NA	False	NA	NA	False	NA	NA	NA	100492192	100473298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100473361_100474096_100474157_100480812_100480984_100483092_100483286_100485120_100485420_100486531_100486632_100486900_100487018_100491308
80146	chr9	-	4889	1	FSM	ENSMUSG00000031931.5	ENSMUST00000214882.2	1633	1	-21	-3235	3	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	6	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGTAACACACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	14695815	14690926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_14690900_14695800
80147	chr1	-	2807	12	NIC	ENSMUSG00000026019.16	novel	2850	14	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	277.900838489303	4	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTGTCTAGGCTGATA	NA	False	NA	NA	False	NA	NA	NA	60137052	60116026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60130178_60130274_60133590_60133686_60136665
80148	chr11	+	3391	7	NIC	ENSMUSG00000038366.16	novel	386	4	NA	NA	-28	-16	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	239.383931513096	3	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTTACCTGCGGACTA	6861	False	NA	NA	False	NA	NA	NA	97692795	97729574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97692961_97697650_97697746_97706523_97706609_97715667_97715776_97724371_97724529_97724909_97725014_97726897
80149	chr11	+	6269	39	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	77516	33081	-30544	-23	internal_fragment	FALSE	canonical	3	47	junction_6	20.7750949609651	71	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAACGTTCATGTCAAC	NA	False	NA	NA	False	NA	NA	NA	23334431	23406663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_23334501_23335012_23335173_23338433_23338561_23338663_23338812_23342841_23342943_23343751_23343962_23351452_23351579_23353559_23353683_23353811_23353896_23355866_23355954_23362214_23362416_23364735_23364819_23367462_23367504_23367648_23367774_23368978_23369132_23370039_23370145_23371097_23371154_23371245_23371367_23376061_23376246_23376634_23376796_23379299_23379366_23382245_23382393_23382477_23382535_23382618_23382697_23383179_23383275_23385906_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524
80150	chr13	-	2483	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	53	6797	-7	-6797	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	3	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGAGCTGTATAATCTG	5899	False	NA	NA	False	NA	NA	NA	38178140	38162173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
80151	chr13	-	2300	7	ISM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	2108	6820	1595	-6820	3prime_fragment	FALSE	canonical	3	888	junction_3	62.4759953902297	3	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATATAATGTGTGTGGT	7954	False	NA	NA	False	NA	NA	NA	38176085	38162196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972
80152	chr13	-	2413	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	124	6796	-10	-6796	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	1	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGAGCTGTATAATCTGT	5970	False	NA	NA	False	NA	NA	NA	38178069	38162172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
80153	chr13	-	2020	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	38	7275	-22	-7275	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	1	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGCACTTAAGATTTCAAG	5884	False	NA	NA	False	NA	NA	NA	38178155	38162651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
80154	chr13	+	1937	8	Antisense	novelGene_ENSMUSG00000021427.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATGGCGTTACTCTTCAT	NA	False	NA	NA	False	NA	NA	NA	38162646	38178115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_38163783_38167368_38167463_38169239_38169319_38169950_38170027_38171491_38171756_38173479_38173567_38175971_38176096_38178038
80155	chr13	-	2076	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	-13	7270	-13	-7270	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	1	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTAAGATTTCAAGACCAA	5833	False	NA	NA	False	NA	NA	NA	38178206	38162646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
80156	chr13	+	2024	8	Antisense	novelGene_ENSMUSG00000021427.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	60	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCACGCACGCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	38162646	38178155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_38163783_38167368_38167463_38169239_38169319_38169950_38170027_38171491_38171757_38173481_38173567_38175971_38176085_38177979
80157	chr4	+	5089	27	FSM	ENSMUSG00000028532.15	ENSMUST00000030257.15	5765	27	656	20	656	-20	multi-exon	FALSE	canonical	3	174	junction_5	18.5926832335326	1	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTATGCAATGGACAGTC	NA	False	NA	NA	False	NA	NA	NA	100634527	100861721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_100634566_100722178_100722242_100754853_100755003_100775238_100775346_100806269_100806397_100809202_100809348_100810230_100810448_100816646_100816797_100821622_100821857_100823381_100823532_100824142_100824267_100825253_100825372_100828077_100828247_100831202_100831346_100831975_100832158_100833542_100833654_100838167_100838291_100840501_100840602_100840690_100840808_100845278_100845440_100845747_100845835_100846575_100846693_100848020_100848173_100849925_100850088_100851231_100851310_100851931_100852034_100860058
80159	chr11	+	3584	3	ISM	ENSMUSG00000017548.16	ENSMUST00000144188.2	553	4	2907	-2102	2907	-19	3prime_fragment	FALSE	canonical	3	1908	junction_2	11.5	4	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTCTGCTTTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	79918927	79924929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_79920173_79920832_79920913_79922670
80160	chr1	+	3871	12	NIC	ENSMUSG00000026353.10	novel	4113	13	NA	NA	134	-5	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	111.657164185956	10	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACCCTGCATTTTGCTC	228	False	NA	NA	False	NA	NA	NA	128172032	128207110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_128172290_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
80161	chr1	-	6466	17	FSM	ENSMUSG00000026361.10	ENSMUST00000018337.9	11586	17	296	4824	27	2537	multi-exon	FALSE	canonical	3	314	junction_10	26.4054178862975	181	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAACCAATGAGTTAAATCC	NA	False	NA	NA	False	NA	NA	NA	143578335	143479361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_143484296_143485107_143485250_143491040_143491142_143493016_143493179_143503239_143503328_143503583_143503620_143510769_143510828_143543362_143543428_143545727_143545807_143547067_143547167_143553376_143553594_143561660_143561750_143567012_143567066_143567151_143567215_143571130_143571201_143574954_143575061_143578231
80162	chr11	-	2407	13	NIC	ENSMUSG00000014195.17	novel	2330	14	NA	NA	-142	-2	intron_retention	FALSE	canonical	3	2298	junction_7	236.358293815884	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGACCGTTCTTTGGT	5749	False	NA	NA	False	NA	NA	NA	100510627	100473656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
80163	chr6	-	3809	12	Antisense	novelGene_ENSMUSG00000029670.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	230	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCGTTGCTATTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	21976034	21949561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_21949791_21950034_21950109_21952127_21952229_21953761_21953826_21965730_21965830_21967625_21967698_21968883_21969003_21969274_21969433_21969907_21970107_21971105_21971305_21971806_21971849_21973581
80164	chr7	+	7463	10	NNC	ENSMUSG00000005621.12	novel	692	4	NA	NA	-670	-1	intron_retention	FALSE	canonical	0	0	junction_1	34.3568779391899	149	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGTCATGTTCTGAAGCC	NA	False	NA	NA	False	NA	NA	NA	80642758	80694911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_80643008_80659181_80659288_80673018_80675258_80679196_80679376_80687097_80687275_80687552_80687713_80687811_80688100_80688300_80688414_80688877_80689014_80691095
80165	chr11	-	486	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	24	127	24	-74	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTGGAGTTTTCATGGG	NA	False	NA	NA	False	NA	NA	NA	29497836	29495972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
80166	chr1	+	1978	8	Antisense	novelGene_ENSMUSG00000026193.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1451	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGGAAACGCGGCCGTT	9171	False	NA	NA	False	NA	NA	NA	71624680	71637623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_71625445_71625990_71626100_71629250_71629364_71629925_71630059_71632232_71632395_71634822_71634962_71636439_71636907_71637532
80168	chr7	+	4552	37	NNC	ENSMUSG00000039187.17	novel	4645	38	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	90.6012325155311	294	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAGTTTTGAAAAT	NA	False	NA	NA	False	NA	NA	NA	79042072	79100012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79042140_79045640_79045744_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075959_79076870_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
80169	chr4	-	8478	13	ISM	ENSMUSG00000034636.10	ENSMUST00000043616.7	8691	14	28714	6	28714	-6	3prime_fragment	FALSE	canonical	1	32	junction_8	24.353302308585	127	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAAGTGTGGTCTACTTT	NA	False	NA	NA	False	NA	NA	NA	108129579	108086926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_108093392_108094538_108094637_108099017_108099071_108099196_108099395_108101922_108101971_108102072_108102235_108107691_108107743_108107970_108108071_108109348_108109414_108112397_108112575_108117146_108117288_108123014_108123770_108129414
80170	chr1	-	4068	9	NNC	ENSMUSG00000026398.15	novel	4733	9	NA	NA	788	-704	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_8	15.8646619882051	16	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAACCAGACAGAGACAG	NA	False	NA	NA	False	NA	NA	NA	136880580	136771012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136880319
80172	chr4	+	2054	18	NNC	ENSMUSG00000028902.5	novel	1820	17	NA	NA	-5575	-33	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	310.577283675011	3509	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTGTTTTGGATGTGTT	NA	False	NA	NA	False	NA	NA	NA	124602993	124626220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124603030_124608337_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
80173	chr17	+	2882	5	NNC	ENSMUSG00000090952.3	novel	925	2	NA	NA	-14324	-1386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1901	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGAATGCGGACCTTTT	8554	False	NA	NA	False	NA	NA	NA	33964641	33979458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_33966788_33967483_33967565_33967840_33968042_33968759_33968952_33979196
80174	chr1	-	5422	22	Antisense	novelGene_ENSMUSG00000016918.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCCAATTGCTGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	12931412	12762675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_12762907_12798815_12798911_12856300_12856374_12856686_12856922_12866988_12867227_12875400_12875554_12878075_12878248_12887561_12887712_12888600_12888776_12890622_12890751_12891015_12891075_12892192_12892320_12906332_12906554_12908582_12908836_12910052_12910148_12910624_12910720_12911664_12911733_12912872_12913047_12918316_12918459_12918551_12918678_12920982_12921016_12929033
80175	chr7	+	5911	3	FSM	ENSMUSG00000038503.16	ENSMUST00000153377.2	1109	3	-201	-4601	127	1149	multi-exon	FALSE	canonical	1	3	junction_1	654.5	71	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAAATGTAAATATTCTT	NA	False	NA	NA	False	NA	NA	NA	83541336	83551889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83542083_83544737_83544971_83546957
80176	chr9	-	4093	12	NNC	ENSMUSG00000032423.13	novel	9450	12	NA	NA	13	598	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	268.990798331052	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGCTTTTTTAATTTG	NA	False	NA	NA	False	NA	NA	NA	88364288	88333891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88336151_88338420_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
80177	chr9	-	4256	12	FSM	ENSMUSG00000032423.13	ENSMUST00000069221.12	9450	12	364	4830	1	598	multi-exon	FALSE	canonical	3	723	junction_1	80.8280493004688	955	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGCTTTTTTAATTTG	NA	False	NA	NA	False	NA	NA	NA	88364248	88333891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
80178	chr9	-	3742	12	NNC	ENSMUSG00000032423.13	novel	9450	12	NA	NA	1	-3	intron_retention	FALSE	non_canonical	0	0	junction_3	399.562281163933	1	210	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCTGGAGGCGAGTGTAA	NA	False	NA	NA	False	NA	NA	NA	88364607	88334744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88336349_88338415_88338783_88343722_88343854_88344299_88344432_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361721_88361846_88361966_88362658_88362819_88364108
80179	chr2	-	4891	2	Genic_Genomic	ENSMUSG00000097052.4_ENSMUSG00000077192.5	novel	139	1	NA	NA	-923	2546	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	47	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACTCCTGAGCCCTCAC	NA	False	NA	NA	False	NA	NA	NA	26530256	26525312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_26529522_26529574
80180	chrX	-	1796	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	68	-5	-8	5	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	1	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGTGTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	135642033	135633696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
80182	chr18	-	3049	23	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	823	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	57.5637088668928	96	15	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGGTCTCTTTACTG	199	False	NA	NA	False	NA	NA	NA	34139149	33929379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013319_34019403_34019483_34024477_34024530_34054882_34054988_34139058
80183	chr19	+	2936	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	-26	68	-9	-68	multi-exon	FALSE	canonical	3	261	junction_1	116.411041625118	636	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTTAAATCACTGGCGAG	NA	False	NA	NA	False	NA	NA	NA	45352163	45518384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
80184	chr1	-	5556	22	Antisense	novelGene_ENSMUSG00000016918.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAGGCAGTTCCAAGAAG	NA	False	NA	NA	False	NA	NA	NA	12931412	12788642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_12789008_12798815_12798911_12856300_12856374_12856686_12856922_12866988_12867227_12875400_12875554_12878075_12878248_12887561_12887712_12888600_12888776_12890622_12890751_12891015_12891075_12892192_12892320_12906332_12906554_12908582_12908836_12910052_12910148_12910624_12910723_12911667_12911733_12912872_12913047_12918316_12918459_12918551_12918678_12920982_12921016_12929033
80185	chr2	-	974	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	803	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	441.743012269452	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAAACATCCTTGGTG	621	False	NA	NA	False	NA	NA	NA	152185087	152179350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_152179701_152180407_152180608_152181634_152181928_152184956
80186	chr18	+	2817	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	24	-1983	3	1983	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	12539	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGAGCCGGGCGTGGTG	-8	True	NA	NA	False	NA	NA	NA	10617798	10630213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
80187	chr9	-	2834	8	NNC	ENSMUSG00000032553.15	novel	3064	7	NA	NA	-16	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	97.1596624119289	673	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTCTTTTATTTGG	NA	False	NA	NA	False	NA	NA	NA	103079352	103065230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_103066658_103066903_103067621_103068267_103068323_103069411_103069549_103074736_103074820_103075987_103076066_103078485_103078581_103079110
80188	chr4	+	5596	12	NNC	ENSMUSG00000028248.16	novel	4545	12	NA	NA	-822	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	134.790256410248	113	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTCTACTGAAAAATTC	NA	False	NA	NA	False	NA	NA	NA	21846760	21876455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21848389_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
80189	chr18	+	7281	49	FSM	ENSMUSG00000023066.11	ENSMUST00000023828.9	7271	49	-17	7	-17	-4	multi-exon	TRUE	canonical	3	17	junction_17	5.75166038828982	61	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTATATTTTTAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	88989896	89149133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_88990203_88990495_88990684_88991641_88991820_88992453_88992544_88993811_88993903_88995796_88995912_88997689_88997841_89001933_89002100_89004017_89004200_89007558_89007675_89013640_89013812_89027365_89027579_89028975_89029089_89031095_89031223_89032665_89032792_89033248_89033366_89035302_89035443_89038220_89038393_89039787_89039888_89045082_89045172_89047015_89047134_89055114_89055212_89056010_89056080_89060259_89060449_89060982_89061223_89064139_89064285_89066489_89066645_89071643_89071864_89078484_89078614_89078875_89078987_89082224_89082384_89083970_89084043_89091668_89091859_89093550_89093643_89100017_89100109_89108550_89108741_89109939_89110031_89113616_89113771_89119754_89119893_89121967_89122186_89126172_89126279_89127374_89127473_89128797_89128876_89131448_89131576_89133568_89133769_89138955_89139224_89146879_89146984_89147873_89147944_89148722
80190	chr8	-	5037	22	NNC	ENSMUSG00000037234.18	novel	12836	22	NA	NA	4	2432	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	14.4716471567189	72	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAATAGCATCCGTCTA	NA	False	NA	NA	False	NA	NA	NA	26609248	26519247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26522059_26524958_26525031_26525160_26525266_26528049_26528151_26529696_26529780_26534267_26534303_26538275_26538368_26549267_26549409_26551404_26551475_26557877_26557966_26558586_26558698_26560101_26560304_26561085_26561227_26562284_26562449_26563627_26563712_26564895_26564959_26572541_26572610_26578087_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
80192	chr16	-	573	4	ISM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	673	0	53	0	3prime_fragment	FALSE	canonical	3	5740	junction_3	655.078790850553	18680	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	NA	False	NA	NA	NA	84631840	84624758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696
80193	chr3	+	4875	10	NIC	ENSMUSG00000001419.18	novel	5401	11	NA	NA	-7	-26	combination_of_known_junctions	FALSE	canonical	3	23	junction_9	42.4185494015688	56	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACATGTTT	6731	False	NA	NA	False	NA	NA	NA	88049871	88079367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88049982_88062984_88063170_88063628_88063833_88065340_88065479_88066428_88066640_88066842_88066900_88068497_88068689_88070264_88070395_88074821_88075042_88075938
80194	chr13	+	3104	5	Antisense	novelGene_ENSMUSG00000074863.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62847420	62855310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_62848461_62848544_62849125_62849253_62849303_62853511_62853586_62853949
80195	chr5	+	2141	11	ISM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	3337	31	-1519	-31	3prime_fragment	FALSE	canonical	3	2266	junction_3	184.299782962433	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCCTTCTGTTAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	45654052	45670002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
80196	chr4	+	1710	5	FSM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	-26	-334	-15	334	multi-exon	FALSE	canonical	3	361	junction_3	29.9457843443781	191	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATACCAAAATATTATTCT	-31	True	NA	NA	False	NA	NA	NA	24496435	24503747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
80197	chr17	+	6558	29	ISM	ENSMUSG00000023852.15	ENSMUST00000024627.14	7916	36	26895	4	-6673	-4	3prime_fragment	FALSE	canonical	3	278	junction_22	38.8354718981374	150	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCAATGGCTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	15952123	15992868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_15952342_15952800_15952902_15953246_15953426_15954492_15954621_15955889_15956107_15957121_15957212_15958743_15958935_15959767_15959957_15962418_15962582_15963339_15963493_15967396_15967469_15968029_15968180_15969634_15969784_15970109_15970207_15970300_15970397_15972583_15972761_15975182_15975344_15977021_15977064_15977878_15978010_15978536_15978676_15978843_15978995_15980589_15980713_15981540_15981670_15982643_15982785_15985104_15985284_15986592_15986690_15987711_15987767_15988827_15989039_15990239
80198	chrX	-	2788	7	NIC	ENSMUSG00000031167.17	novel	2792	7	NA	NA	1	1	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	423.594145379749	142	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTGTGTTACACGTAT	6563	False	NA	NA	False	NA	NA	NA	8011934	8005215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8007448_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
80200	chr13	+	2943	12	NNC	ENSMUSG00000035762.12	novel	2632	12	NA	NA	-4	93	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	80.4627114499897	346	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGGTTTTTGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	84370410	84444082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430633_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
80201	chr2	+	4577	9	NNC	ENSMUSG00000027132.4	novel	2886	10	NA	NA	24	-11	intron_retention	FALSE	non_canonical	0	0	junction_8	172.371691411322	11	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATCTCAAAGAATGTGGT	NA	False	NA	NA	False	NA	NA	NA	112209594	112244574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727_112243757_112243925
80202	chr4	+	2683	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	3328	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	44	2	44	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTGTGTGGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147601271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147597107_147597357_147598111_147598315_147598898_147599728_147600065
80203	chr2	+	2016	8	NNC	ENSMUSG00000027287.15	novel	2730	9	NA	NA	-1076	-669	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	188.563636202634	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAGAAAGCTGTATTAGC	4158	False	NA	NA	False	NA	NA	NA	120415645	120431067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120415674_120416036_120416086_120416639_120416758_120421143_120421177_120424078_120424255_120425281_120425438_120427123_120427269_120429756
80204	chr2	+	2069	9	NNC	ENSMUSG00000027287.15	novel	2730	9	NA	NA	9	-762	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	161.220297652002	546	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTAATGTTTCTATGACT	NA	False	NA	NA	False	NA	NA	NA	120398186	120430974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120420955_120421099_120425281_120425438_120427123_120427269_120429756
80205	chr5	+	3273	22	NNC	ENSMUSG00000013629.17	novel	7137	44	NA	NA	-839	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	261.889817755466	2	47	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	6089	False	NA	NA	False	NA	NA	NA	31226860	31235823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31227025_31227647_31227822_31227911_31228017_31229208_31229427_31229681_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
80207	chr3	+	2347	8	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	-138	-4	intron_retention	FALSE	canonical	0	0	junction_2	459.239655544346	10	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTGTGTGCCTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	122067898	122078916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122068128_122068846_122069456_122069671_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
80209	chr13	-	3782	2	ISM	ENSMUSG00000075054.6	ENSMUST00000222796.2	1382	3	-242	-1116	4	1116	intron_retention	FALSE	canonical	3	522	junction_1	0	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAGTACAAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	18167930	18162303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_18164368_18166212
80210	chr2	+	5746	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	25	9	25	-9	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	135	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATACAAATGAGTGGCCAC	5974	False	NA	NA	False	NA	NA	NA	164721301	164736365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
80211	chr14	+	1891	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	54	2798	2	1262	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	1	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTTGACATTGGCAGG	NA	False	NA	NA	False	NA	NA	NA	63359964	63380574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
80212	chr4	-	2523	13	NNC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	17	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	317.51879865608	1	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCAAACTTGTTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	122779636	122752859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761454_122761590_122763486_122763565_122765189_122765291_122766124_122766247_122779606
80213	chr9	-	589	1	Intergenic	novelGene_1127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTTCAAGAAATTGGGAG	NA	False	NA	NA	False	NA	NA	NA	88732616	88732027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_88732000_88732600
80214	chr19	-	2510	6	Genic_Genomic	ENSMUSG00000095993.2	novel	168	1	NA	NA	-16422	1723	multi-exon	FALSE	canonical	0	0	junction_1	18.2493835512326	13	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATATAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61301929	61283616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_61283775_61283913_61285953_61287055_61287117_61287295_61287423_61288602_61288644_61301845
80215	chr6	-	3621	16	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	13	0	intron_retention	FALSE	canonical	3	203	junction_14	23.0327303346057	36	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	NA	False	NA	NA	NA	146479320	146451129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
80216	chr13	+	434	3	NNC	ENSMUSG00000049517.9	novel	937	4	NA	NA	376	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10076	9	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAAAAATATTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	91071711	91072839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_91071866_91072444_91072554_91072668
80217	chr6	+	5385	15	FSM	ENSMUSG00000030319.9	ENSMUST00000075995.7	5474	15	65	24	65	-24	multi-exon	FALSE	canonical	3	54	junction_11	12.5155005933459	90	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACATAAAACATGCACACAA	NA	False	NA	NA	False	NA	NA	NA	115751563	115782494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_115751640_115757807_115757952_115758568_115758724_115759697_115759822_115762066_115762333_115763836_115763943_115764090_115764231_115766399_115766693_115768152_115768295_115768629_115770133_115772736_115772833_115774830_115775001_115776820_115776986_115778809_115778918_115780597
80218	chr2	+	2456	16	NNC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	-221	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	26.5133928421091	4	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGTATCTGTGACT	NA	False	NA	NA	False	NA	NA	NA	84669517	84693929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84669616_84669755_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
80219	chrX	+	6445	8	FSM	ENSMUSG00000025860.16	ENSMUST00000115094.8	6542	8	105	-8	23	8	multi-exon	FALSE	canonical	3	44	junction_1	28.7345344383332	350	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTTGTATTTGATTTG	NA	False	NA	NA	False	NA	NA	NA	41156817	41198541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_41156934_41157233_41157360_41183243_41184150_41185489_41185590_41187680_41187760_41188713_41188757_41190872_41191074_41193667
80220	chr2	-	1468	11	ISM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	17738	626	-9003	31	internal_fragment	FALSE	canonical	3	118	junction_4	15.7800506970035	42	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATATCACAAATATTTTT	NA	False	NA	NA	False	NA	NA	NA	5051011	5026080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797
80221	chr11	+	7154	19	Fusion	ENSMUSG00000075480.3_ENSMUSG00000020700.12	novel	3450	16	NA	NA	12377	-441	multi-exon	FALSE	non_canonical	0	0	junction_15	19.2309710340789	346	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGGGTGTGACAGATCCG	2025	False	NA	NA	False	NA	NA	NA	105987815	106051542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_105987939_106001569_106001611_106005009_106005110_106008315_106008430_106014611_106014733_106033250_106033385_106036511_106036586_106039390_106039459_106039639_106039733_106040307_106040500_106041095_106041245_106041834_106041967_106042443_106042574_106043042_106043221_106044791_106049662_106049762_106049903_106049989_106050032_106050172_106050269_106051185
80222	chr17	-	1580	2	Genic_Genomic	ENSMUSG00000066878.6	novel	1988	1	NA	NA	23	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACTTTG	NA	False	NA	NA	False	NA	NA	NA	90217854	90215894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_90217112_90217491
80223	chr8	-	3727	6	FSM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	457	1559	130	1402	multi-exon	FALSE	canonical	3	1349	junction_5	146.904594890698	380	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGCAAGTTAAGGCCATT	NA	False	NA	NA	False	NA	NA	NA	4374956	4336940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885
80224	chr17	-	503	4	Intergenic	novelGene_76	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_1	4.92160768674447	1	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCTGGTAAGTGCTCCC	NA	False	NA	NA	False	NA	NA	NA	23036752	23001032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_23001092_23004787_23004923_23035266_23035358_23036534
80225	chr7	-	1442	8	ISM	ENSMUSG00000001794.14	ENSMUST00000207082.2	1241	9	67	6	67	0	intron_retention	FALSE	canonical	3	1474	junction_7	79.8460252930729	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	29892330	29886366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927
80226	chr8	+	2188	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	-168	-1072	-168	1072	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	181	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGGTCTCTTTATTCCTA	NA	False	NA	NA	False	NA	NA	NA	106587043	106607034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
80227	chr2	+	4346	8	NNC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	0	-115	intron_retention	TRUE	non_canonical	0	0	junction_1	33.4566426704102	19	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATCCAAAATGACTTTTTT	NA	False	NA	NA	False	NA	NA	NA	173918110	173941448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_173918988_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
80228	chr3	+	7825	15	ISM	ENSMUSG00000027630.14	ENSMUST00000192328.5	3323	16	34452	-4626	-1	0	3prime_fragment	TRUE	canonical	3	176	junction_4	20.6022834082209	249	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATGACAATTACTAATGT	NA	False	NA	NA	False	NA	NA	NA	22203104	22270758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
80229	chr8	+	4777	25	NNC	ENSMUSG00000031691.15	novel	2941	25	NA	NA	41	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	106.767270265751	262	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAAACACTTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	85763837	85784204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85763921_85765006_85765119_85767090_85767167_85767242_85767393_85771040_85771148_85771230_85771365_85771454_85771537_85771611_85771735_85771826_85771946_85773749_85773811_85773918_85774085_85774211_85774365_85776564_85776791_85776987_85777160_85778166_85778254_85778327_85778436_85778517_85778677_85780087_85780176_85780384_85780484_85780954_85781051_85781350_85781427_85781630_85781731_85781835_85781883_85781968_85782097_85782179
80230	chr3	+	4939	5	FSM	ENSMUSG00000050192.9	ENSMUST00000060500.9	5027	5	67	21	67	-21	multi-exon	FALSE	canonical	3	73	junction_1	7.24568837309472	62	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACAGTGCACAATTCTT	NA	False	NA	NA	False	NA	NA	NA	28835491	28852974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_28835563_28836164_28836366_28836876_28836982_28847833_28847966_28848544
80231	chr9	-	3407	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	20	4424	-20	3307	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	66	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTTCCTGGGAGCTCTC	NA	False	NA	NA	False	NA	NA	NA	21061258	21048941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
80232	chr2	-	4754	1	FSM	ENSMUSG00000102869.3	ENSMUST00000192863.3	4915	1	154	7	4	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	297	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAAAGACTTGGGCGTCT	NA	False	NA	NA	False	NA	NA	NA	156234745	156229991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156230000_156234700
80233	chr4	-	2194	12	Antisense	novelGene_ENSMUSG00000028811.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	61	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTCGTCGCTCCGCTTGC	9084	False	NA	NA	False	NA	NA	NA	129112995	129083695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_129083860_129090617_129090766_129090903_129091074_129094515_129094647_129099919_129099977_129103480_129103580_129104284_129104367_129107733_129107878_129108450_129108547_129109016_129109206_129110469_129110607_129112218
80234	chr19	+	3386	10	NNC	ENSMUSG00000024976.15	novel	2976	7	NA	NA	-228	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	164.243120005484	10	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGAGCTTGTGTGTGTGG	3130	False	NA	NA	False	NA	NA	NA	53932508	54021559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53932733_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498_54019871_54020536
80235	chr15	+	1851	7	Antisense	novelGene_ENSMUSG00000023021.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGTGAATCTCCACCTG	NA	False	NA	NA	False	NA	NA	NA	99633473	99643810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_99634320_99636552_99636702_99637285_99637398_99637488_99637611_99638823_99639136_99639271_99639541_99643769
80236	chr11	-	3077	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	-175	-1858	29	-19	multi-exon	TRUE	canonical	3	79	junction_1	134.545531326759	4	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGAAAACTTTAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	103588695	103567693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
80237	chr3	+	4446	7	FSM	ENSMUSG00000037730.14	ENSMUST00000047502.9	3394	7	-38	-1014	-32	-491	multi-exon	FALSE	canonical	3	28	junction_5	66.6243615770955	272	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATGTTAAATTCCATAG	8747	False	NA	NA	False	NA	NA	NA	30656747	30673531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
80238	chr11	+	4543	3	ISM	ENSMUSG00000038437.12	ENSMUST00000107586.3	7206	20	15207	9	2727	-9	3prime_fragment	FALSE	canonical	3	14	junction_2	2	145	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCAAAGAGACCTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	97569604	97576280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97569882_97571295_97571653_97572371
80239	chr2	+	2887	9	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	-5487	1	intron_retention	FALSE	non_canonical	0	0	junction_1	126.434209670484	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGATTTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	128952104	128968515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128952136_128954583_128954734_128955420_128955703_128957558_128957693_128959847_128961117_128964989_128965187_128965630_128965885_128967133_128967476_128968287
80240	chr2	+	4688	8	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-2913	-11	intron_retention	FALSE	canonical	3	182	junction_2	18.5846107062279	11	83	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAAGTAAGATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	180375297	180384062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
80241	chr17	+	4351	20	FSM	ENSMUSG00000039220.17	ENSMUST00000087211.9	4255	20	-109	13	23	-11	multi-exon	FALSE	canonical	3	16	junction_1	32.7700795901305	276	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTCATTTAACCCCTGG	NA	False	NA	NA	False	NA	NA	NA	36227348	36243162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_36227491_36228089_36228609_36234199_36234318_36234928_36235016_36235136_36235273_36235749_36235802_36237093_36237172_36237291_36237466_36237663_36237770_36237865_36237979_36238801_36238903_36239073_36239222_36239294_36239454_36239543_36239791_36240112_36240177_36240283_36240479_36240664_36240741_36240942_36241057_36241183_36241784_36242040
80242	chr10	+	2543	4	FSM	ENSMUSG00000096795.5	ENSMUST00000200889.4	2384	4	-56	-103	-56	103	multi-exon	FALSE	canonical	3	15	junction_1	8.5764535535124	224	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCAGTGAGTGAAGGTAG	NA	False	NA	NA	False	NA	NA	NA	81540602	81557913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81540735_81554752_81554880_81555078_81555140_81555690
80243	chr1	-	3245	12	FSM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	5	2320	5	1031	multi-exon	FALSE	canonical	3	56	junction_4	6.18449140061635	199	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAGAAGCATTATTTTA	NA	False	NA	NA	False	NA	NA	NA	192812575	192789029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
80244	chr2	-	4467	15	FSM	ENSMUSG00000026773.20	ENSMUST00000192949.6	4801	15	-44	378	-44	13	multi-exon	FALSE	canonical	3	18	junction_2	9.7969174660571	67	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGGTTTTTGCGGAGA	NA	False	NA	NA	False	NA	NA	NA	11558932	11476621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_11479355_11485008_11485183_11486681_11486747_11486864_11486928_11487255_11487386_11488739_11488845_11489015_11489163_11489465_11489674_11491029_11491155_11493536_11493594_11494481_11494557_11495100_11495168_11497370_11497468_11498713_11498840_11558637
80245	chr1	-	4723	19	NNC	ENSMUSG00000009418.17	novel	9353	31	NA	NA	-48355	86	at_least_one_novel_splicesite	TRUE	canonical	2	8	junction_18	13.6282205390773	55	40	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCATCCCCCAAACTCC	2756	False	NA	NA	False	NA	NA	NA	135561798	135382967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135512292_135513094_135530282_135530387_135534899_135535643_135561667
80246	chr13	+	4624	21	Antisense	novelGene_ENSMUSG00000114598.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	39	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTACATCAAAGCCATTAT	NA	False	NA	NA	False	NA	NA	NA	98859919	98942875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_98862284_98862567_98862732_98866694_98866764_98867285_98867483_98868582_98868724_98869030_98869180_98871524_98871637_98879915_98880049_98882308_98882413_98884723_98884818_98886363_98886403_98891558_98891760_98892070_98892146_98900191_98900270_98901011_98901062_98912331_98912424_98913894_98914000_98921287_98921391_98925873_98926026_98926241_98926382_98942813
80247	chr3	+	7210	16	Intergenic	novelGene_3144	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	111	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTCCCCGGCTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	86985905	87081987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_86990927_86991172_86991252_86992111_86992250_86992386_86992497_86993688_86993887_86995471_86995573_86995664_86995791_86996455_86996586_86996788_86996935_86997099_86997209_86997764_86997915_86999410_86999570_87002943_87003094_87005048_87005214_87048283_87048426_87081701
80248	chr1	+	4431	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	-109	0	-101	0	multi-exon	FALSE	canonical	2	71	junction_6	20.1190335305671	156	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTGTGTGTGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	33758866	33781645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
80249	chr5	-	7622	1	Antisense	novelGene_ENSMUSG00000118905.1_AS_novelGene_ENSMUSG00000097180.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	877	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCGCGGCGGAAGAGCTGG	NA	False	NA	NA	False	NA	NA	NA	24063233	24055611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_24055600_24063200
80250	chrX	-	3089	10	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	441.471724972979	2	109	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGCTCTGTGCCATGCC	NA	False	NA	NA	False	NA	NA	NA	23231375	23085524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_23085833_23086024_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127682_23127813_23181368_23181441_23227732_23227824_23231194
80251	chr2	+	2437	10	FSM	ENSMUSG00000027306.16	ENSMUST00000028771.8	3526	10	6	1083	-6	1	multi-exon	FALSE	canonical	3	97	junction_4	379.300265433633	363	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCTATAGTTCAGTACT	NA	False	NA	NA	False	NA	NA	NA	119449203	119480642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
80252	chr8	+	4348	11	Intergenic	novelGene_1569	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	96	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTCCTGCGTCGCTCAT	NA	False	NA	NA	False	NA	NA	NA	4309731	4325904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_4310258_4310512_4311998_4315225_4316688_4316773_4316862_4317253_4317343_4317637_4317774_4317862_4318014_4318298_4318380_4319854_4320030_4324139_4324233_4325842
80253	chr7	-	6360	9	ISM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	1249	1	1249	-1	3prime_fragment	FALSE	canonical	3	717	junction_7	37.8415694045583	3	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAAAGGTCCTTGTCGTT	9241	False	NA	NA	False	NA	NA	NA	140751521	140740241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595
80254	chr10	-	2899	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	-2	3	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	66.9842435867487	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGTTTTGTTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	115198154	115176643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197811_115197865_115197956
80255	chr8	-	5135	27	FSM	ENSMUSG00000031959.16	ENSMUST00000034437.8	4896	27	-21	-218	1	-4	multi-exon	FALSE	canonical	2	3	junction_9	16.2917647181985	78	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGACAATCGTGTACTAA	NA	False	NA	NA	False	NA	NA	NA	112248723	112175432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112199261_112199319_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
80256	chr18	-	2956	3	NIC	ENSMUSG00000024493.10	novel	1759	13	NA	NA	-467	1	intron_retention	FALSE	canonical	3	2089	junction_2	37.5	2	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGAGTATGGACGTCGGA	NA	False	NA	NA	False	NA	NA	NA	42352178	42347822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_42350028_42350532_42350674_42351568
80257	chr18	+	4964	17	NNC	ENSMUSG00000037815.8	novel	3733	18	NA	NA	-8	-4	intron_retention	FALSE	canonical	0	0	junction_7	450.796794576004	5	110	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTAAGAAGCAGAAGTCGT	NA	False	NA	NA	False	NA	NA	NA	35251957	35387828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315544_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35385804_35386657
80258	chr12	-	2313	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	-15	768	3	-438	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	5609	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCAGGGTGCTTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	30961585	30944092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
80259	chr4	-	3741	1	Antisense	novelGene_ENSMUSG00000028601.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	212	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTACTTTAGAAGCCCC	NA	False	NA	NA	False	NA	NA	NA	108036802	108033061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108033100_108036800
80260	chr7	-	4576	10	NNC	ENSMUSG00000030750.14	novel	1120	8	NA	NA	-82	5328	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	430.533117694909	3923	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACAGCAGGGGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	125090653	125061483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_125061703_125062804_125063280_125063934_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
80261	chr5	-	2936	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	33	833	-15	78	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	1	92	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAGGAAAAGCTTGAA	NA	False	NA	NA	False	NA	NA	NA	149559770	149540841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
80262	chr5	+	2499	18	Antisense	novelGene_ENSMUSG00000029657.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	2.58823529411765	1	66	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGCTCTCCGCCGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	149541159	149559650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_149541175_149541850_149542013_149542209_149542331_149542425_149542528_149543335_149543470_149544012_149544148_149546926_149547062_149548433_149548642_149550719_149550855_149550992_149551109_149552671_149552890_149553247_149553502_149553809_149553938_149554224_149554323_149554849_149554973_149555496_149555642_149557297_149557353_149559435
80263	chr10	+	2411	9	NNC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	122.27198166383	985	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTGGCTCAAGTGA	NA	False	NA	NA	False	NA	NA	NA	44144353	44240292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_44144581_44150636_44150691_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
80264	chr11	+	5796	2	FSM	ENSMUSG00000049800.14	ENSMUST00000093292.11	5647	2	-156	7	-75	-7	multi-exon	FALSE	canonical	0	0	junction_1	0	116	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAACATGCTCACAGTT	NA	False	NA	NA	False	NA	NA	NA	20493177	20603014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_20493761_20597801
80265	chr19	-	1259	1	Antisense	novelGene_ENSMUSG00000067608.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3832	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAACCGTCTTGGTCACTT	NA	False	NA	NA	False	NA	NA	NA	9261871	9260612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_9260600_9261900
80266	chr5	-	5419	3	Fusion	ENSMUSG00000118744.1_ENSMUSG00000105987.5	novel	503	3	NA	NA	-1	4	intron_retention	FALSE	non_canonical	0	0	junction_1	0	118	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTAGTCTGAGGTCTTCTT	5260	False	NA	NA	False	NA	NA	NA	23917661	23903289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_23905574_23914244_23915432_23915713
80267	chr11	+	7600	9	Intergenic	novelGene_2445	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	170	129	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCGGGCGAACACAGAGA	3144	False	NA	NA	False	NA	NA	NA	88721617	88755347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_88723194_88723964_88724042_88725487_88725554_88725903_88726057_88727837_88728016_88729755_88729883_88730449_88733148_88734091_88736690_88755220
80268	chr18	-	5573	15	NNC	ENSMUSG00000085595.2	novel	1704	3	NA	NA	60737	39692	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	149	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCCCTCGCCTCCGGGCC	8832	False	NA	NA	False	NA	NA	NA	20737580	20691328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_20691401_20706544_20706580_20707994_20708139_20712102_20712256_20712387_20712536_20713568_20713734_20715762_20715902_20715992_20716178_20723002_20723269_20724888_20725031_20725325_20725561_20727124_20727349_20729014_20729137_20731393_20731724_20734367
80269	chr9	-	2990	11	FSM	ENSMUSG00000032423.13	ENSMUST00000173801.8	2944	11	51	-97	51	97	multi-exon	FALSE	canonical	3	754	junction_4	62.6802201655355	209	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTGTGGAATATGTCT	NA	False	NA	NA	False	NA	NA	NA	88364557	88337533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
80270	chr14	+	923	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-182	705	multi-exon	FALSE	non_canonical	0	0	junction_1	0	271	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669255	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669683_13669982
80271	chr17	+	3968	2	ISM	ENSMUSG00000024160.17	ENSMUST00000024976.5	1947	7	2913	-2003	2214	2000	intron_retention	FALSE	canonical	3	196	junction_1	0	9	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAAATTCCTGGGGTTC	NA	False	NA	NA	False	NA	NA	NA	25109051	25113126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_25109435_25109541
80272	chr18	+	6141	17	NIC	ENSMUSG00000038773.12	novel	6363	24	NA	NA	7005	326	intron_retention	FALSE	canonical	3	208	junction_1	48.1374578031495	273	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAACAAATCTCTTTGGAG	4652	False	NA	NA	False	NA	NA	NA	34936952	34972039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34937103_34941293_34943514_34945424_34945640_34946461_34946615_34952833_34952942_34955424_34955553_34956484_34956765_34957754_34958012_34960391_34960659_34961466_34961639_34961991_34962083_34962220_34962352_34963181_34963302_34964476_34964617_34966363_34966541_34967269_34967405_34970642
80273	chr11	-	1148	2	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	1950	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCTGAAGGAGTCTGGGA	NA	False	NA	NA	False	NA	NA	NA	120470256	120468949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469789_120469947
80274	chr17	-	3087	4	Antisense	novelGene_ENSMUSG00000060149.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	234	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTCCCAGGTTTCCGAT	975	False	NA	NA	False	NA	NA	NA	17195138	17171523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_17171969_17191159_17191286_17191429_17191492_17192684
80275	chr8	-	3832	13	FSM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	-99	1785	-99	-1785	multi-exon	FALSE	canonical	3	189	junction_11	21.3085793884894	299	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAAACACTTTTTCAAAT	NA	False	NA	NA	False	NA	NA	NA	23698461	23663065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
80276	chr8	+	2998	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	-220	-40	-149	40	multi-exon	FALSE	canonical	3	157	junction_17	92.4052680533628	338	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGAGATTAAAGGGTATT	NA	False	NA	NA	False	NA	NA	NA	124100342	124128671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
80277	chrX	+	2801	10	Antisense	novelGene_ENSMUSG00000031229.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	176	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCGAGGCTTGGGCAGGA	NA	False	NA	NA	False	NA	NA	NA	104919587	104972948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_104921180_104921972_104922041_104923514_104923625_104927912_104928023_104931315_104931445_104932597_104932651_104934521_104934579_104943486_104943600_104955075_104955263_104972566
80278	chr8	-	4908	4	NIC	ENSMUSG00000031683.17	novel	3792	5	NA	NA	76	-137	intron_retention	FALSE	canonical	3	636	junction_3	248.967199981577	8	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAAATTACTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	79547693	79533216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_79534875_79536575_79539710_79546615_79546715_79547676
80279	chr18	-	5789	33	FSM	ENSMUSG00000024290.10	ENSMUST00000067947.7	6440	33	640	11	387	-11	multi-exon	TRUE	canonical	3	139	junction_22	28.5588755906111	156	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGATAAAACTTGACTTG	798	False	NA	NA	False	NA	NA	NA	10181405	10064411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_10066052_10067470_10067679_10070218_10070481_10070621_10070701_10072831_10072921_10073114_10073186_10079114_10079275_10080350_10080540_10083121_10083211_10084317_10084412_10090812_10090979_10092128_10092224_10093907_10093978_10095412_10095598_10097482_10097644_10099256_10099408_10100921_10101029_10104073_10104321_10104417_10104510_10106321_10106458_10112343_10112393_10116773_10116863_10119884_10119946_10122608_10122769_10129304_10129397_10131529_10131669_10132127_10132273_10134415_10134501_10136095_10136272_10140175_10140314_10140787_10140889_10150234_10150317_10181224
80280	chr11	-	7914	2	FSM	ENSMUSG00000048732.6	ENSMUST00000056665.4	2393	2	-29	-5492	-29	5492	multi-exon	FALSE	canonical	3	21	junction_1	0	130	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTACTGTGTGTT	7665	False	NA	NA	False	NA	NA	NA	100363596	100347947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_100355272_100363006
80281	chrX	+	1740	10	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	-28	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1484.29562627289	8	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105230740	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240628_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
80282	chr10	+	2820	4	Genic_Genomic	ENSMUSG00000112790.2	novel	2758	1	NA	NA	-17480	-2183	multi-exon	FALSE	canonical	3	45	junction_1	10.7806410858642	226	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGCAATGTGTGTGCAGG	NA	False	NA	NA	False	NA	NA	NA	81832826	81850881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_81832952_81847436_81847564_81847762_81847824_81848374
80283	chr13	-	514	3	ISM	ENSMUSG00000021660.15	ENSMUST00000134542.2	780	5	3129	-41	-1732	-3	3prime_fragment	FALSE	canonical	3	5972	junction_2	539.5	22	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATATGGTTTATCATTTT	NA	False	NA	NA	False	NA	NA	NA	98449755	98446408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_98446710_98447488_98447546_98449599
80284	chr2	-	2678	12	NNC	ENSMUSG00000037376.15	novel	2828	11	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	111.387344415188	4	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGTCATTAATGATACAAT	NA	False	NA	NA	False	NA	NA	NA	132657932	132646129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132647194_132647298_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
80285	chr1	-	2042	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	12	-6	12	6	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	1762	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCACTGGAGAAAATGCA	NA	False	NA	NA	False	NA	NA	NA	182110357	182103330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
80286	chr18	+	8600	11	FSM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	12	4	12	-4	multi-exon	FALSE	canonical	2	46	junction_10	33.3472637558166	333	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATTTTGTGGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	44513605	44558032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249_44543386_44545582_44545694_44548443_44548496_44550632
80287	chr17	-	2811	7	NIC	ENSMUSG00000024206.16	novel	3283	17	NA	NA	-1064	1	intron_retention	FALSE	canonical	3	259	junction_6	13.9970234931098	2	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTGGTGTCCGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	57091768	57082898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299
80288	chr2	+	2975	1	Genic_Genomic	ENSMUSG00000087377.2	novel	NA	NA	NA	NA	5613	611	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCATAACAAGAATTTGAGA	1066	False	NA	NA	False	NA	NA	NA	132100889	132103864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_132100900_132103900
80289	chr2	+	3714	12	NNC	ENSMUSG00000027363.16	novel	4145	19	NA	NA	0	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	120.370227778871	10	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGTACATGTTTTGTCT	3593	False	NA	NA	False	NA	NA	NA	126549279	126601226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578316_126595380_126597006_126597892_126598036_126600039_126600173_126600340
80290	chr5	-	3499	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	-25	46	-8	-46	multi-exon	FALSE	canonical	3	925	junction_1	0	1	187	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGTAGCCGTCGTACAT	NA	False	NA	NA	False	NA	NA	NA	135963478	135937308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_135940506_135963176
80291	chr11	+	3295	7	FSM	ENSMUSG00000010362.10_ENSMUSG00000119776.1	ENSMUST00000010506.10	1124	7	-576	-1595	0	1595	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	4233	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCACTGTCAGACTGGT	NA	False	NA	NA	False	NA	NA	NA	101518191	101528521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
80292	chr7	-	2159	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	7	49	7	-43	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	1	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTTATAGGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	99002439	98994644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
80293	chr14	+	2070	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	3	-353	3	353	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	2098	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTTTGCCCAAGTGACA	NA	False	NA	NA	False	NA	NA	NA	66043288	66055624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
80294	chr16	+	5268	8	ISM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	-28	13348	-28	-7496	5prime_fragment	FALSE	canonical	3	132	junction_3	19.5186985180041	32	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAATGTATTCTTTTTT	8224	False	NA	NA	False	NA	NA	NA	32151046	32199217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714
80295	chr10	+	5636	9	NNC	ENSMUSG00000034613.13	novel	750	7	NA	NA	-18368	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	9.86708543593294	86	17	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGGTTTTGGGTTTTT	1928	False	NA	NA	False	NA	NA	NA	122628780	122781695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_122628865_122638139_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
80296	chr6	-	4264	17	NIC	ENSMUSG00000035245.13	novel	4424	18	NA	NA	-16	-15	intron_retention	FALSE	canonical	3	33	junction_8	6.60699203495812	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTTCATTTACATATCT	NA	False	NA	NA	False	NA	NA	NA	97125904	97086999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97125220_97125792
80297	chr10	-	2999	22	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-4	-963	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	348.854529844744	6	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCATGGTCACTGGGAC	NA	False	NA	NA	False	NA	NA	NA	77845574	77823743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832593_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841330_77845460
80298	chr4	-	3556	4	Genic_Genomic	ENSMUSG00000093594.2	novel	2516	4	NA	NA	13482	-10014	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	83	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTGTTCTATTCAGGA	NA	False	NA	NA	False	NA	NA	NA	147880815	147876789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_147876799_147876994_147877605_147877667_147878374_147878584
80299	chr11	-	3323	19	ISM	ENSMUSG00000025153.10	ENSMUST00000055655.9	10050	43	8316	4665	-776	-1947	internal_fragment	FALSE	canonical	3	426	junction_17	55.5625828888826	2	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAGAACCAGACCCCAGA	6679	False	NA	NA	False	NA	NA	NA	120707057	120701336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120701355_120701466_120701619_120701737_120701940_120702116_120702341_120702425_120702549_120702663_120702784_120702864_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704155_120704231_120704397_120704479_120704867_120705302_120705590_120705837_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865
80300	chr16	+	3744	8	ISM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	20	8	-3	2	intron_retention	FALSE	canonical	3	242	junction_7	27.7378397699251	26	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAAAGTGTTTTGTGCA	NA	False	NA	NA	False	NA	NA	NA	13981158	14010784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950
80301	chr10	-	5161	10	FSM	ENSMUSG00000001211.16	ENSMUST00000166360.8	3439	10	40	-1762	40	-623	multi-exon	FALSE	canonical	3	192	junction_9	86.9833246400257	146	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGAAGAGCTGTAGTG	NA	False	NA	NA	False	NA	NA	NA	78187494	78105634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78187460
80302	chr16	-	7325	29	NIC	ENSMUSG00000002489.17	novel	7255	28	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_25	9.36450092375565	91	24	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGACTTCCCTGTGCCTT	7797	False	NA	NA	False	NA	NA	NA	89940706	89583998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_89586480_89589889_89590063_89591565_89591654_89594919_89595023_89595537_89595597_89596848_89596958_89601580_89601700_89601970_89602151_89606255_89606365_89608357_89608484_89608772_89608842_89609835_89610016_89618765_89618870_89629897_89630123_89634646_89634734_89640140_89640223_89646537_89646643_89652732_89652904_89655486_89655562_89657092_89657240_89662121_89662308_89664397_89664623_89673925_89674099_89681565_89682014_89694492_89695467_89705434_89705604_89752823_89752996_89863408_89863461_89940572
80303	chr3	+	3166	18	Fusion	ENSMUSG00000068917.13_ENSMUSG00000028049.16	novel	2154	13	NA	NA	23	-284	intron_retention	FALSE	canonical	3	36	junction_11	352.004757753313	1	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCTGTGGGAACCAAGAT	NA	False	NA	NA	False	NA	NA	NA	89072308	89089786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_89072414_89074341_89074512_89076001_89076231_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89085296_89085375_89086401_89086531_89086623_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
80304	chr11	-	2240	10	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	-10	-13	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	138.714023252567	550	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTATCTGTAAAGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	121245237	121218062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221025_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
80305	chr9	+	6489	11	ISM	ENSMUSG00000032525.16	ENSMUST00000035112.13	7022	17	21946	10	466	-10	3prime_fragment	FALSE	canonical	3	26	junction_2	11.5394973894013	76	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGCCTGCCTGCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	121570187	121585899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096_121579953_121580732_121580829_121581472_121581530_121582056_121582159_121583310
80306	chr4	-	3402	7	Antisense	novelGene_ENSMUSG00000009863.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	216	16	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCGGTTTCTCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	140706504	140688595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_140688786_140693803_140693948_140698451_140698532_140700191_140700329_140700969_140703525_140704685_140704801_140706323
80307	chrX	+	3607	1	NIC	ENSMUSG00000067768.13	novel	827	8	NA	NA	-1247	-350	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	10	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTAAAGAATATAACCCTG	NA	False	NA	NA	False	NA	NA	NA	72259708	72263315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72259700_72263300
80308	chr11	-	1791	4	Antisense	novelGene_ENSMUSG00000088854.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	79	18	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATACTGGACTCGGGTGG	9401	False	NA	NA	False	NA	NA	NA	95824773	95754395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_95755688_95789311_95789452_95795947_95796030_95824496
80309	chr1	+	1804	15	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	502.164625620413	8	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGTTTTGTGATCT	NA	False	NA	NA	False	NA	NA	NA	59724164	59750665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749722_59750507
80310	chr15	-	4354	32	NIC	ENSMUSG00000022607.19	novel	4417	32	NA	NA	2255	-6	combination_of_known_junctions	FALSE	canonical	3	16	junction_31	51.4913083802468	4	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAAGGTTGCATTGCCTT	4216	False	NA	NA	False	NA	NA	NA	73264293	73076956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_73078110_73081176_73081258_73082590_73082747_73087827_73087935_73088192_73088233_73093655_73093719_73101709_73101842_73103703_73103842_73108000_73108088_73114214_73114327_73128882_73129088_73131396_73131487_73134362_73134464_73136062_73136179_73137950_73138052_73140657_73140743_73146335_73146434_73148705_73148763_73163883_73163937_73167201_73167233_73168439_73168558_73169986_73170095_73175668_73175747_73176255_73176397_73181663_73181719_73192623_73192687_73192889_73192970_73197597_73197686_73202697_73202865_73214981_73215209_73263607_73263730_73264192
80311	chrX	+	4885	14	FSM	ENSMUSG00000031216.14	ENSMUST00000036606.14	4963	14	69	9	69	-9	multi-exon	FALSE	canonical	3	27	junction_1	6.60016137511158	62	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGCACACTGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	98086255	98118325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_98086401_98104333_98104406_98106970_98107053_98107999_98108064_98109163_98110570_98111194_98111369_98112179_98112340_98112793_98112993_98113352_98113564_98113827_98113943_98114879_98115105_98116039_98116258_98116359_98116537_98116688
80312	chr8	-	3301	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	163	1712	-59	-16	multi-exon	FALSE	canonical	3	27	junction_11	35.6008635794598	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	9851	False	NA	NA	False	NA	NA	NA	25592229	25530871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
80313	chr18	+	3143	20	NNC	ENSMUSG00000024260.15	novel	561	3	NA	NA	10	-2359	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	44.3502803646274	13	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGGATTATCCCAAAGAAA	7572	False	NA	NA	False	NA	NA	NA	31768190	31853755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_31768384_31769034_31769153_31780093_31780330_31781186_31781346_31782597_31782710_31783543_31783669_31786554_31786680_31799393_31799542_31799688_31799780_31799957_31800063_31807407_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250_31844500_31844661_31844788_31848393_31848498_31853709
80315	chr17	+	3539	21	NIC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	0	-4	intron_retention	FALSE	canonical	3	146	junction_8	21.096208190099	65	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	45817766	45831765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829892_45830438_45830523_45830629_45830741_45831211
80316	chr16	+	4367	18	NNC	ENSMUSG00000022855.10	novel	4499	17	NA	NA	3	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	116.378930066064	195	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTGCTGGTGACATCT	2256	False	NA	NA	False	NA	NA	NA	21828287	21867990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_21828493_21830243_21830303_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382_21867656_21867704
80317	chr7	-	3830	5	NIC	ENSMUSG00000059975.16	novel	3711	5	NA	NA	-48	127	combination_of_known_splicesites	FALSE	canonical	3	10	junction_4	18.3626659284539	71	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCAGTCTGCTCATCAAA	5330	False	NA	NA	False	NA	NA	NA	29643228	29632088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29635469_29637024_29637121_29637366_29637494_29642915_29642971_29643056
80318	chr7	-	3167	1	FSM	ENSMUSG00000065818.3	ENSMUST00000083884.3	90	1	-2301	-776	-2301	776	mono-exon	FALSE	NA	NA	NA	NA	NA	185	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTAAGTGTGTACGATGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775000_44778200
80319	chr4	-	1782	9	ISM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	308	4	-32	-4	intron_retention	FALSE	canonical	3	2647	junction_5	244.637870126438	103	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTGAGAGATGGCTGT	0	True	NA	NA	False	NA	NA	NA	43031402	43027693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970
80320	chr4	+	4342	1	FSM	ENSMUSG00000052912.8	ENSMUST00000121843.2	3123	1	371	-1590	371	1590	mono-exon	FALSE	NA	NA	NA	NA	NA	20	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATAAAATATCAGCATCA	NA	False	NA	NA	False	NA	NA	NA	145191238	145195580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145191200_145195600
80321	chr18	-	3547	22	NNC	ENSMUSG00000024613.17	novel	4529	25	NA	NA	42	-309	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	470.102941397099	1	168	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTGGGAAGAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	60981948	60949377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60949597_60951097_60951283_60951933_60952017_60952459_60952675_60954714_60954837_60955875_60956060_60961436_60961632_60961727_60961908_60962081_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
80322	chr19	+	3804	12	FSM	ENSMUSG00000024935.12	ENSMUST00000025875.5	3800	12	-4	0	-4	0	multi-exon	FALSE	canonical	3	74	junction_8	5.75246982529323	147	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCTCTCATCTGT	NA	False	NA	NA	False	NA	NA	NA	28812469	28891360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_28812733_28856412_28856554_28870234_28870328_28871853_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085_28880194_28882011_28882135_28882732_28882928_28886830_28886966_28889053
80323	chr2	-	4547	1	Antisense	novelGene_ENSMUSG00000045822.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGTCCTACCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	164664027	164659480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_164659500_164664000
80324	chr4	-	5617	5	ISM	ENSMUSG00000040761.17	ENSMUST00000078886.10	12082	15	63466	0	-3490	0	3prime_fragment	FALSE	canonical	3	63	junction_4	11.6833214455479	188	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGGTGTGAAGGTGGTT	8070	False	NA	NA	False	NA	NA	NA	141202294	141195200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141196349_141196693_141196853_141197126_141197322_141197420_141197922_141198680
80325	chr5	+	4468	24	FSM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	192	-105	59	105	multi-exon	FALSE	canonical	3	55	junction_8	11.5830199691965	110	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCAGCTCCCAGTCCAG	NA	False	NA	NA	False	NA	NA	NA	3646257	3687337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
80326	chr2	+	2420	13	NNC	ENSMUSG00000027282.18	novel	2596	13	NA	NA	3	-27	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	729.912147491433	79	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAAGTAAAGATGATGTAG	122	False	NA	NA	False	NA	NA	NA	90677524	90696957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90677730_90679714_90679800_90679941_90680049_90683136_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
80327	chr16	+	2861	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	40	-742	-7	742	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	892	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATCTTCCTGCAGGA	NA	False	NA	NA	False	NA	NA	NA	59292177	59313566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
80328	chr14	-	3850	1	Genic_Genomic	ENSMUSG00000115691.2	novel	NA	NA	NA	NA	12588	2114	mono-exon	FALSE	NA	NA	NA	NA	NA	36	46	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGACATCGTGTTCTAA	NA	False	NA	NA	False	NA	NA	NA	32027354	32023504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_32023500_32027400
80329	chrX	-	2113	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-28	91	combination_of_known_junctions	FALSE	canonical	3	238	junction_8	106.849119673491	970	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTGGTAGTAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	138963489	138907462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
80330	chr13	-	3224	6	NNC	ENSMUSG00000060739.9	novel	2700	6	NA	NA	-28	-3	intron_retention	FALSE	non_canonical	0	0	junction_5	368.327245801882	13	32	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTGTGTGGTCTAAC	NA	False	NA	NA	False	NA	NA	NA	97274409	97265934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262_97274307_97274357
80331	chr17	+	1638	3	NIC	ENSMUSG00000044533.16	novel	1094	5	NA	NA	4	-5	intron_retention	FALSE	canonical	3	8303	junction_1	1336	71	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTATTATGTTTTTTTT	6241	False	NA	NA	False	NA	NA	NA	24939087	24940894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24939427_24939507_24940689_24940776
80332	chr7	+	2266	4	ISM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-26	4994	-6	-10	5prime_fragment	FALSE	canonical	3	198	junction_1	67.6214955961983	81	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATAACTTCTACACGT	NA	False	NA	NA	False	NA	NA	NA	79674555	79736584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181
80333	chr13	+	3352	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	360	-789	-84	789	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	921	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGTTTTACGTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	117357167	117411740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
80334	chr7	+	2762	6	NNC	ENSMUSG00000066232.5	novel	3867	17	NA	NA	-19	5209	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	376.071482566812	5	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGAACAATTCAGTTTTCT	7220	False	NA	NA	False	NA	NA	NA	109617502	109638640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636562_109636897
80335	chr9	+	7231	1	FSM	ENSMUSG00000046785.9	ENSMUST00000060711.8	7149	1	-91	9	-75	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	76	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTAAAAGCCTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	111100921	111108152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_111100900_111108200
80336	chr11	-	3612	5	NNC	ENSMUSG00000020925.17	novel	2366	5	NA	NA	-239	1003	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	281.570595055663	1039	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATTTTTATGTGTAT	NA	False	NA	NA	False	NA	NA	NA	102588847	102574508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588332
80337	chr1	-	4754	8	ISM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	1217	-2886	1217	-6	3prime_fragment	FALSE	canonical	3	37	junction_7	9.80420567815628	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAACTTTTTAAATCCTT	NA	False	NA	NA	False	NA	NA	NA	136880151	136770314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839
80338	chr19	+	3822	2	Antisense	novelGene_ENSMUSG00000024824.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGGCCTCCGCTTCCTT	8954	False	NA	NA	False	NA	NA	NA	4247740	4251644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_4251398_4251479
80339	chr9	+	910	4	Genic_Genomic	ENSMUSG00000118728.1	novel	72	1	NA	NA	-8362	463	multi-exon	FALSE	canonical	0	0	junction_3	17.326921891156	18	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTATGAGCCATTTCCT	NA	False	NA	NA	False	NA	NA	NA	88949026	88957923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_88949127_88949384_88949440_88949528_88949604_88957243
80341	chr14	-	4628	22	NIC	ENSMUSG00000021870.18	novel	4501	23	NA	NA	-179	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	50.7223110126808	162	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCATGTTTGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	26255074	26134330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482
80343	chr5	+	3924	23	NIC	ENSMUSG00000005907.15	novel	4555	24	NA	NA	-40	-133	combination_of_known_splicesites	FALSE	canonical	1	1	junction_20	19.2701542021647	6	46	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGGTGGACCTCATTTG	NA	False	NA	NA	False	NA	NA	NA	3646330	3687097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3685314_3685513_3685779_3685911_3686770
80344	chr10	-	2038	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	67	184	9	-184	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	1	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCCAGGGTTCCTATT	NA	False	NA	NA	False	NA	NA	NA	127358246	127353191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
80345	chr3	+	4433	1	Genic_Genomic	ENSMUSG00000001419.18	novel	NA	NA	NA	NA	-593	5	mono-exon	FALSE	NA	NA	NA	NA	NA	177	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGGTTTTGATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	88074965	88079398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_88075000_88079400
80346	chr1	-	3791	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	11	-1513	11	1513	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	1354	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTATGCTAGTAATAGC	NA	False	NA	NA	False	NA	NA	NA	119432513	119396521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
80347	chr5	-	4223	18	NIC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	20	338	intron_retention	FALSE	canonical	3	157	junction_6	23.7661618657071	21	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAACCAATCTGGC	969	False	NA	NA	False	NA	NA	NA	36987977	36963926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
80348	chr18	-	2762	9	FSM	ENSMUSG00000024539.18	ENSMUST00000122412.2	2667	9	-95	0	-95	0	multi-exon	FALSE	canonical	0	0	junction_6	140.12890271104	82	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTGTCCCTTACCTTT	NA	False	NA	NA	False	NA	NA	NA	67857760	67804281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
80349	chr11	-	6949	5	NNC	ENSMUSG00000018501.18	novel	793	4	NA	NA	-1763	-3659	intron_retention	FALSE	non_canonical	0	0	junction_4	177.689863244925	60	86	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAATACAGCAGCTGCTCA	NA	False	NA	NA	False	NA	NA	NA	62223532	62212281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62216456_62217931_62218076_62220266_62220479_62220801_62222712_62223023
80351	chr14	-	6070	15	Antisense	novelGene_ENSMUSG00000007817.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCCGAGTATGTGGAGGG	NA	False	NA	NA	False	NA	NA	NA	25667151	25646141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_25646281_25647157_25647430_25650089_25650273_25650946_25651029_25651641_25651813_25652265_25652411_25653741_25653958_25654922_25655027_25655518_25655677_25656438_25656515_25656747_25656817_25657169_25657413_25658528_25658696_25661688_25661946_25663363
80353	chr2	+	2517	12	NIC	ENSMUSG00000027282.18	novel	2596	13	NA	NA	3	-67	intron_retention	FALSE	canonical	3	2084	junction_3	217.29862911412	93	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTTTGCATTACCTAC	122	False	NA	NA	False	NA	NA	NA	90677524	90696917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
80354	chr17	+	2353	16	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	2	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	231.344245660012	1	22	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTAAAGTTGGGCT	NA	False	NA	NA	False	NA	NA	NA	32255385	32279567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274206_32274290_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
80355	chr17	-	2220	3	Antisense	novelGene_ENSMUSG00000023915.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCTCAAAGCCTTCCTCA	NA	False	NA	NA	False	NA	NA	NA	43396284	43349184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_43351079_43375856_43376118_43396219
80356	chr1	+	6930	19	Genic_Genomic	ENSMUSG00000103435.2	novel	428	2	NA	NA	-20854	55302	multi-exon	TRUE	non_canonical	0	0	junction_1	0	65	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCAGGCGCCAGACCCAGA	NA	False	NA	NA	False	NA	NA	NA	176561228	176641744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_176563548_176564409_176564464_176565094_176565188_176566646_176566734_176567482_176567659_176570068_176570214_176577490_176577727_176582731_176584550_176585962_176586083_176596797_176597095_176597280_176597436_176601998_176602476_176607825_176607962_176609816_176609977_176610062_176610118_176616027_176616112_176620101_176620192_176621070_176621215_176641460
80357	chr13	-	2291	9	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	-6	-6693	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.416072243844	5	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAACCTCTGAATATCTAA	5900	False	NA	NA	False	NA	NA	NA	38178139	38162069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38162338_38162632_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
80358	chr2	+	4862	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	27	-2778	-19	2778	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	1464	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGTAGGGAATGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	83474805	83497744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
80359	chr7	+	3388	14	NNC	ENSMUSG00000030539.14	novel	3760	14	NA	NA	14370	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	23.9876694162578	2	53	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGAGACCAGAGGCTCTC	3432	False	NA	NA	False	NA	NA	NA	79862653	79876267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343_79875842_79875881
80361	chr10	-	2562	21	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	51	-957	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	263.862895269494	1	58	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTCACTGGGACAACATG	NA	False	NA	NA	False	NA	NA	NA	77845510	77823737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837916_77845432
80362	chr10	-	2632	21	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	460	-963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	417.006762535094	1	91	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCATGGTCACTGGGAC	NA	False	NA	NA	False	NA	NA	NA	77845101	77823743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824615_77824704_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837374_77841253_77841349_77845003
80363	chr10	-	2531	22	NNC	ENSMUSG00000020277.11	novel	3730	22	NA	NA	-10	-959	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	350.920907033476	1	89	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845580	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830029_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836610_77837251_77837335_77837843_77837922_77841274_77841349_77845432
80364	chr11	+	2888	13	NNC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	2	0	intron_retention	FALSE	non_canonical	0	0	junction_2	292.891049140575	1	111	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	NA	False	NA	NA	NA	80319513	80364074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80319582_80322530_80322621_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
80365	chr9	+	2850	6	NNC	ENSMUSG00000037405.9	novel	2535	7	NA	NA	9057	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	211.022652812441	5	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCTTGTGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	20936337	20940106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_20937418_20937494_20937896_20938373_20938632_20938727_20938977_20939066_20939356_20939533
80366	chr14	+	3856	20	Antisense	novelGene_ENSMUSG00000022020.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	37	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCGCGCGCGCCAAGAT	NA	False	NA	NA	False	NA	NA	NA	79571948	79628173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_79573372_79573827_79573924_79576971_79577118_79577477_79577579_79578428_79578534_79580563_79580760_79582334_79582549_79588812_79588941_79593159_79593314_79593806_79593977_79596895_79596971_79606519_79606619_79607435_79607536_79612173_79612295_79614806_79614879_79618935_79619069_79620674_79620832_79622091_79622198_79624458_79624547_79628001
80367	chr16	+	2383	12	NNC	ENSMUSG00000004069.18	novel	2648	12	NA	NA	-57597	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	240.327943987288	128	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAATCAAAATTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	4400255	4525547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_4400268_4502081_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
80368	chr2	-	3468	13	ISM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	11151	18	144	-8	3prime_fragment	FALSE	canonical	3	1358	junction_5	366.17865251207	4	40	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGCCACAAGAAAATT	5749	False	NA	NA	False	NA	NA	NA	156011007	155989176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604
80369	chr10	+	1975	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	217	-112	217	112	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	2185	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTAGCAAAAATATTCCT	NA	False	NA	NA	False	NA	NA	NA	88567146	88580068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
80370	chrX	-	3278	9	FSM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	33	-1542	-7	1542	multi-exon	FALSE	canonical	3	153	junction_1	278.250982702667	681	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTGATTGATTAAAACTT	NA	False	NA	NA	False	NA	NA	NA	37545298	37492396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
80371	chr14	-	1590	9	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCTGGCCTCTCCCGTGC	NA	False	NA	NA	False	NA	NA	NA	63380566	63359964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63360014_63367084_63367174_63370762_63370914_63371412_63371498_63373054_63373170_63373853_63373974_63375480_63375566_63375797_63375807_63379679
80373	chr2	+	2766	16	FSM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	-34	-290	-34	290	multi-exon	FALSE	canonical	3	501	junction_9	43.3601968015214	1418	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTCCTGGTGCTGGTGA	NA	False	NA	NA	False	NA	NA	NA	157579286	157733824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
80375	chr17	-	3302	5	FSM	ENSMUSG00000073406.11	ENSMUST00000194244.6	862	5	-157	-2283	-157	2209	multi-exon	FALSE	canonical	3	214	junction_3	129.95191418367	992	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGCCTGTCATTGTATG	NA	False	NA	NA	False	NA	NA	NA	36395272	36388797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394858_36395051
80377	chr3	+	3115	7	FSM	ENSMUSG00000028019.10	ENSMUST00000129285.8	2818	7	-210	-87	-210	81	multi-exon	FALSE	canonical	3	14	junction_2	32.8705372974374	252	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGTTCCAAGGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	80944268	81121428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_80944862_81038324_81038384_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
80378	chr11	-	1765	5	ISM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	986	-5	986	0	3prime_fragment	FALSE	canonical	3	3182	junction_2	152.739975121119	52	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	NA	False	NA	NA	NA	120471220	120468929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007
80379	chr12	+	3005	12	NIC	ENSMUSG00000021076.7	novel	4022	13	NA	NA	35	172	intron_retention	FALSE	canonical	3	306	junction_4	24.8576110365876	7	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGTGAGATATGTTGT	9766	False	NA	NA	False	NA	NA	NA	70984751	71009007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
80380	chr5	+	3994	32	NNC	ENSMUSG00000036928.15	novel	4211	34	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	41.0353265235312	7	103	14	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGTATGACTTGAGATTG	NA	False	NA	NA	False	NA	NA	NA	138278784	138310652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_138278883_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138298385_138298478_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307375_138307534_138309995_138310068_138310297
80381	chr1	+	1788	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-14	-556	-14	556	mono-exon	FALSE	NA	NA	NA	NA	NA	3	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	60743076	60744864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743100_60744900
80382	chr5	-	4167	15	NNC	ENSMUSG00000006641.13	novel	3436	18	NA	NA	5	0	intron_retention	TRUE	canonical	0	0	junction_4	41.4726366636694	3	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	738	False	NA	NA	False	NA	NA	NA	31205418	31193379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195224_31195357_31195441_31196285_31196354_31196647_31196761_31197097_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
80383	chr15	-	4411	33	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	151	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCACACAGTAAACCGCAG	NA	False	NA	NA	False	NA	NA	NA	12935316	12826150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12826259_12827315_12827509_12833950_12834746_12837365_12837460_12842140_12842254_12842385_12842617_12846152_12846309_12848150_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865183_12866646_12866729_12867679_12867753_12878738_12878913_12881707_12881810_12883251_12883349_12885071_12885181_12889705_12889811_12890117_12890256_12890570_12890635_12901190_12901246_12902667_12902769_12905682_12905785_12907406_12907477_12912591_12912642_12913984_12914141_12915421_12915544_12925982_12926154_12926284_12926387_12928940_12929040_12929748_12929788_12935074
80384	chr5	-	4436	4	ISM	ENSMUSG00000029512.12	ENSMUST00000198561.2	851	6	-928	-1528	-515	-6	intron_retention	FALSE	canonical	3	980	junction_2	85.4647425680451	2	81	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	110937847	110932359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439
80385	chr6	-	4875	4	Antisense	novelGene_ENSMUSG00000030245.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGGAAACACGCAGCCGCC	NA	False	NA	NA	False	NA	NA	NA	142349582	142332969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_142333096_142338055_142338148_142339653_142341995_142347266
80386	chr16	-	6312	25	NNC	ENSMUSG00000060657.9	novel	7751	27	NA	NA	39	-5085	intron_retention	FALSE	non_canonical	0	0	junction_7	10.9620557682702	49	64	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTAAGACCAGATCCTGTC	9855	False	NA	NA	False	NA	NA	NA	13977092	13932121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945127_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433_13950671_13954801_13954883_13956206_13956386_13958046_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
80387	chr15	-	2773	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	31	-708	31	-3	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	333	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTGCCTTAGTTAATGG	NA	False	NA	NA	False	NA	NA	NA	99670451	99632764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
80388	chr3	+	3678	6	NIC	ENSMUSG00000028060.15	novel	3636	13	NA	NA	-2110	0	intron_retention	FALSE	canonical	3	344	junction_1	21.9672483483936	23	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTCATTTCTCTTTTT	9935	False	NA	NA	False	NA	NA	NA	88604035	88620161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88617250_88618067
80389	chr4	-	2792	15	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	2640	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	100.559277878011	1	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTACCTGACTTGTCTTT	4190	False	NA	NA	False	NA	NA	NA	41120114	41114432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118501_41118655_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006
80390	chr9	+	2895	13	FSM	ENSMUSG00000034263.14	ENSMUST00000170517.9	2820	13	-75	0	-75	0	multi-exon	TRUE	canonical	3	115	junction_1	33.6860505254029	335	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTAGGATTTTGACTGT	NA	False	NA	NA	False	NA	NA	NA	64868111	64894260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64868221_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
80391	chr4	+	2864	16	NNC	ENSMUSG00000028423.16	novel	4349	16	NA	NA	44	-170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	213.247232625003	1	138	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAATGGAAAAATCAAGCTG	6089	False	NA	NA	False	NA	NA	NA	40970949	41012438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986768_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993854_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
80392	chr16	+	4099	12	Antisense	novelGene_ENSMUSG00000039738.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	28	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACGGAGAACCGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	3803659	3821619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_3805039_3805776_3805938_3806828_3806982_3808094_3808180_3808565_3808777_3809328_3809653_3809779_3809986_3812571_3812785_3813557_3813742_3816981_3817210_3818816_3819545_3821392
80393	chr17	+	1596	12	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	2	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1048.34466920691	1	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCTGATTTATCAGAGTT	NA	False	NA	NA	False	NA	NA	NA	35460755	35472595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471521_35471635_35471722_35471833_35471939_35472085_35472182_35472331_35472448
80394	chr8	-	2961	17	NIC	ENSMUSG00000002885.15	novel	2986	18	NA	NA	-49	0	intron_retention	FALSE	canonical	2	28	junction_13	44.5082506396286	2	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAGCTTTGGAACAATA	NA	False	NA	NA	False	NA	NA	NA	84467861	84449879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84460042_84460196_84460637_84460755_84460924_84460982_84467735
80395	chr6	-	3419	4	NIC	ENSMUSG00000030042.16	novel	1769	4	NA	NA	-66	1707	combination_of_known_junctions	FALSE	canonical	3	146	junction_3	397.998604129322	1011	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTATGTAAGATTATGGCT	6043	False	NA	NA	False	NA	NA	NA	82682412	82621974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_82625018_82628417_82628460_82629063_82629149_82682163
80396	chr3	-	4109	16	Antisense	novelGene_ENSMUSG00000027820.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGCACTGGGGTTATCCC	NA	False	NA	NA	False	NA	NA	NA	63257830	63148932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_63148986_63207543_63207715_63208398_63208433_63234131_63234295_63235203_63235287_63235392_63235487_63235585_63235710_63237070_63237135_63247434_63247572_63249327_63249428_63250915_63251053_63251160_63251255_63252543_63253572_63254555_63254637_63256036_63256872_63256919
80397	chr10	+	4494	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	-6	-3123	-6	-18	multi-exon	FALSE	canonical	3	980	junction_10	384.309843167665	2272	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCTAATTTTATAAAATACA	NA	False	NA	NA	False	NA	NA	NA	111309135	111333993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
80398	chr7	-	1111	5	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	807.111013120252	131	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTATCCAGTCTGG	NA	False	NA	NA	False	NA	NA	NA	28879906	28873611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876623_28879701
80399	chr7	-	3857	8	FSM	ENSMUSG00000042659.16	ENSMUST00000048068.15	3905	8	46	2	-7	-2	multi-exon	FALSE	canonical	3	375	junction_1	213.33809518495	184	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTGGGTGGCTCATTTT	NA	False	NA	NA	False	NA	NA	NA	68398943	68386744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_68389282_68389632_68389788_68390702_68390866_68391392_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
80400	chr14	-	4814	19	FSM	ENSMUSG00000068015.9	ENSMUST00000228252.2	3125	19	28	-1717	18	219	multi-exon	FALSE	canonical	3	67	junction_17	17.7194355175815	80	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACTAAATGATGCGTAAAT	597	False	NA	NA	False	NA	NA	NA	75185288	74991895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
80401	chr5	+	4116	5	NNC	ENSMUSG00000079659.6	novel	1040	5	NA	NA	5623	7563	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGCGGGCGACTCTGATC	6984	False	NA	NA	False	NA	NA	NA	9168870	9176608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_9170141_9170351_9170494_9171083_9171465_9171781_9171938_9174441
80402	chr2	+	2497	6	NIC	ENSMUSG00000014077.14	novel	2609	7	NA	NA	4	-3	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	75.1654175801612	24	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTGGTTGAGTTTTACC	NA	False	NA	NA	False	NA	NA	NA	119378205	119417505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_119378399_119391211_119391285_119402248_119402377_119411175_119411238_119415010_119415134_119415587
80403	chr4	-	4925	21	NIC	ENSMUSG00000033326.16	novel	4663	22	NA	NA	-29	-15	intron_retention	FALSE	canonical	3	48	junction_20	11.5329961415063	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAATTATTTTGAAAAC	NA	False	NA	NA	False	NA	NA	NA	118037204	117994217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118037089
80404	chr16	+	2317	14	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	606	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	81.3875962810204	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTCTAAAAAAGTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	36649414	36693069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_36649636_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
80405	chr5	-	2691	9	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_8	425.280771226492	2147	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186769	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
80406	chr18	+	2954	18	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-325	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	21.5871934353502	13	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATTGGTGATCTTTCTCC	NA	False	NA	NA	False	NA	NA	NA	21194654	21233255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21200688_21200901_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
80407	chr2	-	5098	22	NNC	ENSMUSG00000026867.20	novel	5758	26	NA	NA	1565	0	intron_retention	FALSE	canonical	0	0	junction_15	66.6989717646915	1	78	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGCTGCAGGGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	34617297	34566195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599253_34602169_34602351_34605216_34605343_34607264_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227
80408	chr6	+	5506	9	FSM	ENSMUSG00000030199.17	ENSMUST00000111963.8	5707	9	185	16	-84	-13	multi-exon	FALSE	canonical	3	28	junction_2	19.2418814048939	100	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TATAAAAAAAAAAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	134012847	134247105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134013102_134043269_134043429_134114247_134114381_134199827_134199993_134210481_134210617_134225236_134225768_134238652_134238796_134239981_134240083_134243220
80409	chr17	+	2617	19	NNC	ENSMUSG00000007029.17	novel	4048	29	NA	NA	89	-109	intron_retention	FALSE	canonical	0	0	junction_7	459.754429888902	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGAGGATCTTGTCGGTGG	3470	False	NA	NA	False	NA	NA	NA	35223776	35233336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233194
80410	chr5	+	3231	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	36	3	36	-3	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	286	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGAGTGCTTGGATTCAA	NA	False	NA	NA	False	NA	NA	NA	44025930	44069714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
80411	chr6	-	2802	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	34	-851	0	851	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	916	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACTACAGCAGAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	113508579	113490983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
80412	chr2	+	8237	36	ISM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	29009	4	6940	-4	3prime_fragment	TRUE	canonical	3	156	junction_1	19.7579227198631	137	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCTGCTCCCAGTGTCA	NA	False	NA	NA	False	NA	NA	NA	166676516	166739968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166676538_166677532_166677713_166678121_166678378_166684604_166684674_166687369_166687522_166690786_166690918_166692962_166693198_166693874_166693975_166695174_166695315_166696824_166696934_166698326_166698511_166701182_166701295_166701705_166701912_166702233_166702319_166702444_166702617_166703503_166703656_166705476_166705606_166706612_166706772_166707599_166707748_166708831_166708932_166709065_166709107_166709207_166709378_166710811_166710964_166712129_166712303_166713378_166713540_166715495_166715627_166715782_166715913_166718412_166718549_166720190_166720330_166720437_166720493_166723091_166723207_166727698_166727830_166732188_166732358_166733686_166733826_166735420_166735539_166736531
80413	chr16	-	6804	28	NIC	ENSMUSG00000022973.19	novel	7012	33	NA	NA	13	4	combination_of_known_junctions	FALSE	canonical	3	22	junction_27	11.5384488762197	80	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGACTTCTTTACTCAAAA	2461	False	NA	NA	False	NA	NA	NA	90807936	90732984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_90735923_90741242_90741464_90741686_90741796_90743679_90743751_90747238_90747374_90748687_90748898_90752196_90752360_90754481_90754561_90757131_90757348_90757447_90757566_90758261_90758419_90760705_90760865_90761100_90761294_90761392_90761534_90764187_90764273_90766070_90766263_90770797_90770964_90773486_90773640_90775576_90775659_90776638_90776809_90777836_90777934_90778695_90778758_90784227_90784312_90785029_90785256_90788267_90788536_90790828_90790916_90806911_90807058_90807860
80414	chr11	+	4739	26	NIC	ENSMUSG00000034543.16	novel	5085	27	NA	NA	268	-2	intron_retention	FALSE	canonical	2	110	junction_1	80.4943327197636	221	38	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCCTGCGTTCAGTACAT	NA	False	NA	NA	False	NA	NA	NA	3600026	3640475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_3600147_3600307_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
80415	chr14	-	2936	8	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-4	1207	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	107.347043532191	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	NA	False	NA	NA	NA	21102259	21084874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21095555_21095832_21102207
80416	chr11	-	3331	14	NIC	ENSMUSG00000020451.18	novel	3693	15	NA	NA	3	-1217	intron_retention	FALSE	canonical	3	120	junction_13	39.3946802043419	12	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTCTGTTACTCGGGAC	9858	False	NA	NA	False	NA	NA	NA	3321332	3295472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
80417	chr11	-	2390	8	FSM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	1	5	1	-5	multi-exon	FALSE	canonical	0	0	junction_2	192.168081190846	629	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATGTATTTTGTGGTTT	4489	False	NA	NA	False	NA	NA	NA	79971816	79937323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
80418	chr19	-	3787	7	NNC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	92	-400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.682809261507	3	151	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTTATTAATACTGACCTA	7532	False	NA	NA	False	NA	NA	NA	44396056	44383293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44384734_44385286_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
80419	chr8	-	6628	26	FSM	ENSMUSG00000033282.15	ENSMUST00000047783.14	7009	26	10	371	10	-371	multi-exon	FALSE	canonical	2	7	junction_9	4.90126514279732	82	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTGTTCCTGCCATTC	NA	False	NA	NA	False	NA	NA	NA	92039880	91944028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_91946918_91947999_91948134_91951880_91951966_91959435_91959620_91975336_91975408_91977777_91977932_91979109_91979206_91979482_91979567_91979703_91979895_91987372_91987752_91990136_91990289_91996726_91997180_92000238_92000357_92000917_92001098_92001751_92001803_92002257_92002365_92007345_92007486_92012861_92012936_92014213_92014361_92016250_92016357_92025856_92026001_92027405_92027509_92031346_92031646_92034669_92034815_92036965_92037058_92039830
80420	chr12	+	4010	21	Antisense	novelGene_ENSMUSG00000020964.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCAATCCGCGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	91775136	91815951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_91776828_91778650_91778779_91780604_91780777_91781390_91781467_91781746_91781916_91782541_91782689_91782994_91783085_91784055_91784121_91784993_91785070_91786812_91786887_91790309_91790363_91791591_91791749_91792070_91792155_91793279_91793341_91793427_91793485_91797462_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810040_91815733
80421	chr9	+	3642	17	NIC	ENSMUSG00000031918.17	novel	3106	16	NA	NA	31	496	combination_of_known_junctions	FALSE	canonical	3	121	junction_4	125.44469336624	189	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCCAAACGGCAGAGAAAT	NA	False	NA	NA	False	NA	NA	NA	13660523	13718273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_13660697_13671713_13671785_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
80422	chr3	+	1535	7	NNC	ENSMUSG00000078578.10	novel	2504	8	NA	NA	-18	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1300.07576702283	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACCAATGAGTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	135144271	135171812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144460_135145404_135145581_135161106_135161139_135164558_135164641_135165735_135165842_135168710_135168805_135170955
80423	chr3	+	1259	8	NNC	ENSMUSG00000078578.10	novel	2493	8	NA	NA	-14930	-229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1368.82543124552	2	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAATGGAAATTGGAAGTC	NA	False	NA	NA	False	NA	NA	NA	135128979	135171590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135129072_135145404_135145581_135160968_135161011_135161106_135161139_135164558_135164641_135165735_135165842_135168710_135168805_135170955
80424	chr11	+	3431	20	NNC	ENSMUSG00000025579.15	novel	3633	20	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	141.654626613455	4	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTCTCACGTCACCTCA	NA	False	NA	NA	False	NA	NA	NA	119158855	119176278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119159049_119160913_119161505_119163695_119163846_119164816_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175412_119175861
80425	chr3	-	3902	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	28	-1416	28	981	multi-exon	FALSE	canonical	3	154	junction_6	34.1987654098149	319	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTCTCTGCGTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	51184907	51161669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51184625
80427	chr17	+	6066	2	FSM	ENSMUSG00000041429.4	ENSMUST00000234888.2	583	2	-5483	0	11	0	multi-exon	FALSE	canonical	3	269	junction_1	0	3	151	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	919	False	NA	NA	False	NA	NA	NA	24851666	24857810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24857504_24857581
80428	chr3	-	1747	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	-1	at_least_one_novel_splicesite	FALSE	canonical	1	27	junction_1	518.171275809824	253	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGTGTCTGTGTGATCA	NA	False	NA	NA	False	NA	NA	NA	98247240	98220486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220774_98221562_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
80429	chr16	-	2725	11	NNC	ENSMUSG00000044626.14	novel	3923	10	NA	NA	0	476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	73.6438048989866	1	120	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGCCTGTTAGAGGAAT	NA	False	NA	NA	False	NA	NA	NA	21814190	21773660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786905_21790064_21790182_21792807_21792898_21794982_21795085_21800085_21800195_21802650_21803019_21814070
80430	chr5	+	4665	30	NNC	ENSMUSG00000013629.17	novel	6489	43	NA	NA	668	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	183.980961120157	5	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAACAGCCAAACAGTT	NA	False	NA	NA	False	NA	NA	NA	31219805	31235803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31229937_31230151_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
80431	chr7	+	2732	4	NNC	ENSMUSG00000059851.16	novel	595	3	NA	NA	10	7	intron_retention	FALSE	non_canonical	0	0	junction_1	319.61226509632	3	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAATGCTATACCTGTGA	663	False	NA	NA	False	NA	NA	NA	4743193	4748914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743399_4743503_4745728_4745945_4746110_4748775
80432	chr7	+	4225	3	FSM	ENSMUSG00000078765.12_ENSMUSG00000036826.15	ENSMUST00000169962.2	568	3	-54	-3603	0	-1	multi-exon	FALSE	canonical	3	637	junction_1	7	31	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCTGCCTGTCCTCATT	NA	False	NA	NA	False	NA	NA	NA	30262763	30267383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_30263045_30263354_30263422_30263506
80434	chr11	-	4500	1	Genic_Genomic	ENSMUSG00000040365.15	novel	NA	NA	NA	NA	3564	2072	mono-exon	FALSE	NA	NA	NA	NA	NA	113	84	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAATGTGCCATGTATGGA	NA	False	NA	NA	False	NA	NA	NA	48699658	48695158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48695200_48699700
80435	chr16	+	2849	14	ISM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	-10	2	-9	-2	intron_retention	FALSE	canonical	3	137	junction_13	47.2114718783801	3	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAAAAGTTGTCATGTTA	NA	False	NA	NA	False	NA	NA	NA	36648759	36693073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812
80437	chrX	-	4359	9	FSM	ENSMUSG00000036022.16	ENSMUST00000114838.8	3536	9	-824	1	-39	-1	multi-exon	FALSE	canonical	3	73	junction_3	8.54034542626936	166	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGATCGTAAAAGTCTGCC	NA	False	NA	NA	False	NA	NA	NA	52358721	52332302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
80438	chr14	-	5769	12	NIC	ENSMUSG00000021936.15	novel	2587	12	NA	NA	-30	-17	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	3.14655787270487	208	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAGTGGTATGAAAGTA	NA	False	NA	NA	False	NA	NA	NA	33169145	33099871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_33104282_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112198_33112271_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
80439	chr6	-	4294	1	NIC	ENSMUSG00000085794.6	novel	1435	6	NA	NA	5454	-990	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	100	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCCCAACATCCCTCAG	2738	False	NA	NA	False	NA	NA	NA	83675071	83670777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83670800_83675100
80440	chr6	-	3098	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	4	-2217	-1	2217	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	5625	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCCAACCCTCCTCCCAC	7650	False	NA	NA	False	NA	NA	NA	86661500	86649915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
80441	chr1	+	3022	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	-8	-1184	-6	1184	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	509	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGATGAAAAAATAACCC	NA	False	NA	NA	False	NA	NA	NA	52884196	52961329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
80442	chr7	+	2038	11	NNC	ENSMUSG00000030523.19	novel	2575	11	NA	NA	13	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	361.678600417553	5	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTGAGTTTTCAGACTAT	NA	False	NA	NA	False	NA	NA	NA	63835315	63861178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_63835372_63844359_63844583_63847194_63847282_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
80443	chr8	+	3467	20	FSM	ENSMUSG00000031787.9	ENSMUST00000034239.9	3777	20	-34	344	-34	-344	multi-exon	FALSE	canonical	3	123	junction_1	16.4357221924964	304	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTTCCAAAAGTTCTTAA	775	False	NA	NA	False	NA	NA	NA	95807779	95826495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95807933_95809225_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824026_95824147_95824242_95824393_95824582_95824660_95824733_95824809_95824946_95825064_95825281
80445	chr6	+	4659	6	NIC	ENSMUSG00000030204.11	novel	4006	10	NA	NA	0	-1066	intron_retention	FALSE	canonical	3	520	junction_5	18.9039678374674	4	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATTTCCCAGGCCAAGT	6588	False	NA	NA	False	NA	NA	NA	134988588	134997452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134993617_134994083
80447	chr11	-	6379	14	FSM	ENSMUSG00000069769.14	ENSMUST00000107909.8	6436	14	57	0	10	0	multi-exon	FALSE	canonical	0	0	junction_9	5.72650848321069	113	49	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTAGTGTTCTTGTGT	2039	False	NA	NA	False	NA	NA	NA	88608998	88230207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88235487_88237878_88237952_88239609_88239765_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
80448	chr11	-	2333	11	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	202.705599330655	924	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTACTCTATCTGTAAAGAG	NA	False	NA	NA	False	NA	NA	NA	121245219	121218066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121221877_121221955_121226205_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
80449	SIRV12002	+	9346	1	FSM	SIRV12002A	SIRV12002	11999	1	0	2653	0	-2653	mono-exon	FALSE	NA	NA	NA	NA	NA	100	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAAACCGAAGAGGCCGA	NA	False	NA	NA	False	NA	NA	NA	0	9346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV12002_+_0_9300
80450	chr1	+	3053	14	NNC	ENSMUSG00000026280.18	novel	4173	13	NA	NA	21	-1183	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	120.392651488969	1253	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAAGTCTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	93682647	93717149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713465_93713550_93713631_93713689_93714232_93714327_93715407
80451	chr17	+	1723	2	FSM	ENSMUSG00000044533.16_ENSMUSG00000077709.3	ENSMUST00000132803.2	389	2	-1339	5	0	-5	multi-exon	FALSE	canonical	3	10975	junction_1	0	62	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTATTATGTTTTTTTT	6237	False	NA	NA	False	NA	NA	NA	24939083	24940894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24940689_24940776
80453	chr1	+	1326	10	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	642.026383058523	7	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCAGTTTTGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	59724229	59750666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729709_59743278_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
80454	chr1	+	1942	15	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	103	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_13	766.25720358168	1	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGTTTTGTGATCTCTT	NA	False	NA	NA	False	NA	NA	NA	59724315	59750668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731635_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59749653_59749812_59750429
80455	chr1	+	1766	14	NNC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	97	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	823.072465839836	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGGCAGTTTTGTGATCT	NA	False	NA	NA	False	NA	NA	NA	59724309	59750665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_59724386_59729644_59729722_59731495_59731572_59737441_59737619_59740043_59740113_59741980_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748158_59748296_59749653_59749812_59750429
80456	chrX	+	1323	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	3	33	3	-33	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	2012	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGCTAGAATAAATTATCC	NA	False	NA	NA	False	NA	NA	NA	111221033	111282419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
80457	chr15	-	3582	9	ISM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	7	1403	7	-1403	intron_retention	FALSE	canonical	3	2074	junction_1	195.859643622672	10	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCTACTTTATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	10486026	10476267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380
80458	chr10	+	2530	4	FSM	ENSMUSG00000020265.17	ENSMUST00000020501.15	2630	4	67	33	-45	-33	multi-exon	FALSE	canonical	3	1171	junction_3	110.14031454871	2454	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCCTGTAAAATAAACAAGT	NA	False	NA	NA	False	NA	NA	NA	77441997	77454132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451981
80459	chr6	-	3384	17	NNC	ENSMUSG00000005069.13	novel	3148	16	NA	NA	-9528	-7	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_15	46.2045384675575	3	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAACTGGACTGACGTG	NA	False	NA	NA	False	NA	NA	NA	124401554	124373797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381091_124381203_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124392790_124393025_124401471
80460	chrX	+	2939	5	Antisense	novelGene_ENSMUSG00000025040.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	805	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTCTTCCCTGTACAC	NA	False	NA	NA	False	NA	NA	NA	17421842	17438560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_17424250_17424918_17425047_17434269_17434345_17437538_17437699_17438391
80461	chrX	+	3022	4	NNC	ENSMUSG00000073131.13	novel	4652	4	NA	NA	-3177	-1421	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	181.726901329073	61	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCAACTTCTGATATG	NA	False	NA	NA	False	NA	NA	NA	70856352	70866891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_70856555_70860076_70860306_70863673_70863784_70864410
80462	chr7	+	2634	6	NIC	ENSMUSG00000025439.6	novel	1504	7	NA	NA	-24	-5	intron_retention	FALSE	canonical	3	1189	junction_3	39.3263270596175	63	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTATATCGCTGTGATTTT	NA	False	NA	NA	False	NA	NA	NA	97345877	97368081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97363288_97365657_97365747_97367425
80463	chr7	+	2965	24	Antisense	novelGene_ENSMUSG00000099330.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.611793359976969	2	38	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGGGAGGGGTCCGAGAAC	NA	False	NA	NA	False	NA	NA	NA	44182259	44191675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44182319_44182627_44182723_44182793_44182849_44183106_44183221_44183307_44183444_44183810_44183919_44183998_44184140_44184439_44184615_44185120_44185259_44185352_44185453_44187033_44187184_44187417_44187530_44187750_44187864_44188020_44188116_44188195_44188389_44188477_44188597_44188791_44188933_44189954_44190056_44190269_44190434_44190697_44190828_44190912_44190993_44191074_44191246_44191321_44191452_44191530
80464	chr17	+	880	2	Antisense	novelGene_ENSMUSG00000024121.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATGCCAGTGCCACTCTTG	NA	False	NA	NA	False	NA	NA	NA	24382841	24383811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24383582_24383671
80465	chr5	-	2006	12	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	3	465	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_9	680.72819541507	13	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAACCGTGCTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	117527107	117517216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525494_117525759_117525933_117525999_117526981
80466	chr8	+	3919	8	FSM	ENSMUSG00000011306.8	ENSMUST00000211808.2	2963	8	3	-959	3	959	multi-exon	FALSE	canonical	3	384	junction_4	42.1644012728021	15	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACCATCAACAAAAGCAAC	2381	False	NA	NA	False	NA	NA	NA	70495686	70520520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486
80468	chr7	-	3471	7	NIC	ENSMUSG00000030722.8	novel	3388	8	NA	NA	17	0	intron_retention	FALSE	canonical	3	215	junction_6	20.4260182664714	389	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGGTTTCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	125995892	125982025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_125984312_125986573_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
80469	chr14	-	5961	1	Genic_Genomic	ENSMUSG00000091832.2	novel	NA	NA	NA	NA	-898	2840	mono-exon	FALSE	NA	NA	NA	NA	NA	60	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	43178752	43172791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_43172800_43178800
80471	chr3	-	1632	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	532.478843718945	236	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATGGTGTCTGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	98247240	98220488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220774_98221483_98221518_98222368_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
80472	chr11	+	3738	14	Fusion	ENSMUSG00000042678.18_ENSMUSG00000020537.10	novel	1788	13	NA	NA	-51	2009	multi-exon	TRUE	canonical	0	0	junction_13	134.407267695863	1419	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAGACTCGGGAGAAAGT	NA	False	NA	NA	False	NA	NA	NA	60345365	60361589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889_60360508_60360617
80473	chr17	-	4099	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	80	-2237	80	2237	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	698	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGTTGGATATCATTTC	NA	False	NA	NA	False	NA	NA	NA	41245858	41231704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
80474	chr11	-	3084	13	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	-38	-11	intron_retention	FALSE	canonical	3	272	junction_12	68.4301651320527	16	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTACTTTATAAGCGTGG	NA	False	NA	NA	False	NA	NA	NA	57409481	57373829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405118_57409398
80476	chr11	+	5248	27	FSM	ENSMUSG00000034543.16	ENSMUST00000093389.9	5085	27	-56	-107	-56	0	multi-exon	FALSE	canonical	2	110	junction_1	78.9355590669193	233	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGCGTTCAGTACATTC	NA	False	NA	NA	False	NA	NA	NA	3599437	3640477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3600147_3600307_3600448_3608671_3608726_3611828_3611864_3618770_3618840_3619328_3619420_3622265_3622375_3625827_3625988_3626103_3626216_3626641_3626768_3627402_3627483_3628226_3628310_3628535_3628622_3629655_3629797_3629879_3630035_3630174_3630304_3630782_3630889_3631674_3631808_3633544_3633617_3633698_3634077_3634613_3634746_3634837_3634893_3635384_3635527_3635657_3635883_3635975_3636070_3638110_3638300_3639034
80477	chr6	+	1679	1	Intergenic	novelGene_4199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTAAATGGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	87008773	87010452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_87008800_87010500
80478	chr18	+	3205	17	NNC	ENSMUSG00000024614.8	novel	4611	16	NA	NA	0	-1234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	53.2699126501067	30	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGAAATAGTTTTCT	4790	False	NA	NA	False	NA	NA	NA	90528325	90560157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062_90558747_90558870
80480	chrX	-	4096	4	FSM	ENSMUSG00000061273.4	ENSMUST00000059899.3	4234	4	140	-2	140	2	multi-exon	FALSE	canonical	3	129	junction_2	4.64279609239471	147	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGTTTGGTAGTGGGT	NA	False	NA	NA	False	NA	NA	NA	55643289	55630869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_55634664_55636437_55636542_55640749_55640803_55643144
80481	chr1	+	1536	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-15	-303	-15	303	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGCTTTCCTACCCCAG	NA	False	NA	NA	False	NA	NA	NA	60743075	60744611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743100_60744600
80482	chr19	-	2704	11	NIC	ENSMUSG00000024941.10	novel	2731	17	NA	NA	681	-11	intron_retention	FALSE	canonical	3	227	junction_10	30.7571129984594	4	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTCACATCCTGGGTC	8664	False	NA	NA	False	NA	NA	NA	5819639	5808465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809833_5810008_5810174_5810560_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496
80483	chr11	-	1869	1	ISM	ENSMUSG00000020863.16	ENSMUST00000166312.8	5244	12	32178	22	3443	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	31	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTTTTTAAGTGGGAA	NA	False	NA	NA	False	NA	NA	NA	94180606	94178737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_94178700_94180600
80484	chr8	+	2016	11	NNC	ENSMUSG00000002342.18	novel	2080	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	87.8651808169766	22	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5869	False	NA	NA	False	NA	NA	NA	70625057	70635500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70625091_70629456_70629576_70629890_70629989_70630101_70630259_70631516_70631567_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
80485	chr6	-	772	1	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-5	-6215	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACCTAACTTGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	124689109	124688337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124688300_124689100
80486	chr6	-	3158	1	FSM	ENSMUSG00000004268.12	ENSMUST00000204334.2	4329	1	875	296	875	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	NA	False	NA	NA	NA	124684501	124681343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124681300_124684500
80487	chr17	-	727	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	537	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGGCAGGATCAACCAGGT	NA	False	NA	NA	False	NA	NA	NA	40157991	40157264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40157300_40158000
80488	chr16	+	7563	29	NNC	ENSMUSG00000022883.12	novel	7563	29	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	15.2815414865151	97	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCCTTCCTTGTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	72460044	72842983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_72461083_72539013_72539341_72701517_72701676_72730100_72730222_72730561_72730701_72732546_72732675_72756960_72757094_72759041_72759214_72767054_72767261_72768867_72768950_72769095_72769265_72769358_72769526_72774573_72774696_72775447_72775680_72776732_72776855_72780596_72780769_72786486_72786685_72790554_72790582_72792004_72792048_72798806_72798962_72801297_72801634_72803711_72803820_72806499_72806645_72809762_72810012_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
80489	chr16	-	2923	1	Antisense	novelGene_ENSMUSG00000022774.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTTTCCCGAGACA	NA	False	NA	NA	False	NA	NA	NA	31777738	31774815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_31774800_31777700
80490	chr19	-	2359	1	Genic_Genomic	ENSMUSG00000038155.12	novel	NA	NA	NA	NA	-19	406	mono-exon	FALSE	NA	NA	NA	NA	NA	162	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCGAGGCCAGCCTGGT	NA	False	NA	NA	False	NA	NA	NA	4092237	4089878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_4089900_4092200
80491	chr16	+	513	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	-22	9	6	0	multi-exon	FALSE	canonical	3	927	junction_1	3609.33805392346	313	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGTATTTTTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	32876874	32880526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
80492	chr14	+	1447	9	NIC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_4	829.856727092093	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	NA	NA	NA	14296777	14303777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
80493	chr4	-	3090	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	346	6	346	-6	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	1	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGAGCTGTTTGAGTGAC	2206	False	NA	NA	False	NA	NA	NA	41314543	41291305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
80494	chr14	-	3326	1	Intergenic	novelGene_539	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGATCCTGCAAAACCAGG	NA	False	NA	NA	False	NA	NA	NA	34088967	34085641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_34085600_34089000
80495	chr12	+	1650	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	51	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1908.10962997413	17	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCATACAAGTATTAAATG	NA	False	NA	NA	False	NA	NA	NA	24758290	24764102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763308_24763756
80496	chr8	+	3067	8	FSM	ENSMUSG00000031770.17	ENSMUST00000161576.8	1952	8	-2	-1113	-2	1113	multi-exon	FALSE	canonical	3	396	junction_6	55.7864002152818	931	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTATATTGTGGTATATG	NA	False	NA	NA	False	NA	NA	NA	95113063	95123118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95113367_95115983_95116062_95116148_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
80497	chr14	-	4499	7	NIC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	-120	intron_retention	FALSE	canonical	3	2964	junction_2	212.018605053634	14	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTATCACTCCTGAGACT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63737770_63746158
80498	chr14	-	2480	12	NNC	ENSMUSG00000021814.18	novel	2727	13	NA	NA	42	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	341.306653033542	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCTTTTGACCTAGAGT	8245	False	NA	NA	False	NA	NA	NA	20529934	20505345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20523338_20523398_20529847
80499	chr8	+	7219	3	Antisense	novelGene_ENSMUSG00000069895.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCCGGAGCCGCCCCACA	8805	False	NA	NA	False	NA	NA	NA	110453290	110464338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_110460375_110461936_110461995_110464261
80500	chr7	+	3916	17	Antisense	novelGene_ENSMUSG00002076275.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCCTTGTGGATTTGCC	NA	False	NA	NA	False	NA	NA	NA	140681144	140697724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_140681841_140681931_140682045_140682170_140682270_140682342_140682440_140682999_140683144_140683900_140684080_140684155_140684300_140684395_140684496_140684583_140684639_140686674_140686788_140686963_140687413_140687512_140688757_140688853_140688901_140690288_140690433_140690550_140690670_140691067_140691142_140697625
80501	chr13	+	6461	19	Antisense	novelGene_ENSMUSG00000021754.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	47	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCGACTAAAGTTACGGGA	NA	False	NA	NA	False	NA	NA	NA	111882981	111912546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_111885584_111886976_111887107_111887750_111887898_111888900_111889030_111890271_111890438_111891178_111891330_111891644_111892893_111893142_111893336_111893626_111893720_111894599_111894722_111896485_111896763_111899585_111899772_111900032_111900114_111900614_111900740_111904498_111904644_111905008_111905128_111905820_111906023_111909131_111909325_111912394
80502	chr18	-	1974	18	FSM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	-76	16	-57	-10	multi-exon	FALSE	canonical	3	343	junction_7	37.2351547251364	1286	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGCATTTAGCAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	56695457	56659831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
80504	chr9	-	7900	16	NNC	ENSMUSG00000097665.2	novel	1986	5	NA	NA	6362	37234	intron_retention	FALSE	non_canonical	0	0	junction_1	0	21	157	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCCACGCGGTTTTCG	5019	False	NA	NA	False	NA	NA	NA	21316654	21279303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21279394_21298993_21299093_21299818_21300049_21303589_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21310545_21310709_21310887_21310978_21311135_21311252_21315486_21315989
80505	chr3	+	4398	14	NIC	ENSMUSG00000037818.17	novel	3277	13	NA	NA	-18	-7	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_7	9.23909880592053	63	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAAGTATTTGCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	40848679	40892564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_40848879_40859320_40859429_40860306_40860392_40860601_40860654_40864937_40865039_40871120_40871200_40871306_40871392_40873812_40873841_40877847_40877987_40884571_40884662_40885315_40885418_40887958_40888338_40889301_40889465_40889776
80506	chrX	+	7864	23	FSM	ENSMUSG00000033792.13	ENSMUST00000055941.7	4866	23	-46	-2952	0	2952	multi-exon	FALSE	canonical	2	29	junction_4	14.4839609212032	87	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTCAAGTGTCGCTGTG	NA	False	NA	NA	False	NA	NA	NA	105070881	105171484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105070986_105113375_105113514_105128719_105129210_105129694_105130421_105131940_105132124_105135689_105135854_105138458_105138621_105140382_105140460_105140995_105141222_105142391_105142626_105144132_105144225_105145465_105145594_105145952_105146108_105146317_105146453_105148752_105148948_105150789_105150973_105153366_105153584_105158695_105158843_105161857_105162001_105163840_105164045_105165195_105165314_105166948_105167052_105167944
80507	chr12	-	2718	4	NIC	ENSMUSG00000059436.14	novel	1926	4	NA	NA	-31	2	intron_retention	FALSE	canonical	3	20	junction_1	20.7257220756131	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGTAGTAGTGTCTTCTT	NA	False	NA	NA	False	NA	NA	NA	77009006	76984045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_76986289_76986740_76986865_76999942_77000051_77008763
80508	chr11	-	3656	5	NIC	ENSMUSG00000001034.18	novel	3134	7	NA	NA	8	-5	intron_retention	FALSE	canonical	3	192	junction_4	24.0883789408918	3	109	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGACTCTGCGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	61385084	61379642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_61380097_61380189_61380324_61380674_61382513_61383729_61384781_61384905
80509	chrX	+	6101	7	ISM	ENSMUSG00000035476.10	ENSMUST00000048250.10	6364	9	35385	41	35257	-41	3prime_fragment	FALSE	canonical	3	98	junction_5	9.17877987534291	102	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTCCTGCAAAATAAATTA	NA	False	NA	NA	False	NA	NA	NA	84653012	84678034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_84653191_84657576_84659036_84659979_84660141_84665159_84665254_84667947_84668032_84671765_84671868_84674011
80510	chr2	-	3592	5	NNC	ENSMUSG00000063364.11	novel	745	5	NA	NA	1	2991	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	8.03118920210451	27	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGCTGTGCTGAGCTC	NA	False	NA	NA	False	NA	NA	NA	150204684	150181764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_150184799_150184882_150185076_150186228_150186290_150186499_150186627_150204507
80511	chr2	-	3306	6	NIC	ENSMUSG00000026753.6	novel	4115	7	NA	NA	10	35	intron_retention	FALSE	canonical	3	417	junction_2	27.7964026449467	73	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTTAATAAAATAATCT	NA	False	NA	NA	False	NA	NA	NA	39116322	39086710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39096730_39100969_39101066_39116178
80512	chr12	-	3556	15	FSM	ENSMUSG00000041846.16	ENSMUST00000048305.10	4516	15	848	112	102	-9	multi-exon	FALSE	canonical	3	387	junction_8	78.1559142917253	322	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAGAAATTGTATTAATT	9659	False	NA	NA	False	NA	NA	NA	101049074	101005779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_101007039_101008083_101008311_101008713_101008905_101009701_101009845_101010748_101010919_101015918_101016078_101017592_101017696_101017789_101017922_101019726_101019844_101021788_101021906_101022008_101022087_101024582_101025201_101031242_101031342_101034895_101034952_101048987
80513	chr11	+	3650	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	-31	6	-16	-6	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	496	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTAGCCATGAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	43324554	43338802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
80514	ERCC-00074	-	503	1	Antisense	novelGene_ERCC-00074A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11904	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	503	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_ERCC-00074_-_0_500
80515	chr3	+	2725	1	Genic_Genomic	ENSMUSG00000019710.14	novel	NA	NA	NA	NA	1422	2083	mono-exon	FALSE	NA	NA	NA	NA	NA	8	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTCCCTTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	87830337	87833062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_87830300_87833100
80516	chr4	+	2539	8	NIC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-30	0	intron_retention	FALSE	canonical	3	1814	junction_2	374.178992418531	21	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGTGTCACTGCAGGC	-8	True	NA	NA	False	NA	NA	NA	40722528	40733900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40732177_40732727
80517	chr17	+	1517	12	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	24	-58	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1048.34466920691	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTCCTGATTTATCAGAGT	NA	False	NA	NA	False	NA	NA	NA	35460804	35472594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471550_35471635_35471722_35471833_35471939_35472085_35472182_35472331_35472448
80518	chr11	-	1276	6	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	16	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8485.60234750604	1	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9957	False	NA	NA	False	NA	NA	NA	69812196	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69812036
80519	chr10	+	2050	13	NIC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	-62	4	intron_retention	FALSE	canonical	3	604	junction_8	37.2904329404861	659	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAGTTTCAAAATATTCT	9135	False	NA	NA	False	NA	NA	NA	127102174	127117823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127114092_127114185_127114278_127117269
80520	chr18	-	2045	16	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	-3	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	309.973074099456	1	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTGTGATCAATAAGAAC	-3	True	NA	NA	False	NA	NA	NA	10030084	9995610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010084_10012226_10012272_10016540_10016615_10018026_10018096_10022817_10022851_10024533_10024680_10029912
80521	chr8	+	2598	19	NIC	ENSMUSG00000031787.9	novel	3777	20	NA	NA	96	-1157	intron_retention	FALSE	canonical	3	123	junction_1	16.7497927018681	23	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGACTTCCTTATGAGAGG	905	False	NA	NA	False	NA	NA	NA	95807909	95825682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_95807933_95809225_95809522_95813915_95814047_95816587_95816706_95820143_95820245_95820541_95820584_95821107_95821192_95821347_95821464_95821800_95821873_95821979_95822131_95822233_95822425_95822516_95822648_95822983_95823035_95823839_95823917_95824026_95824147_95824242_95824393_95824582_95824809_95824946_95825064_95825281
80522	chr9	-	3058	1	Genic_Genomic	ENSMUSG00000032194.10	novel	NA	NA	NA	NA	28664	2	mono-exon	FALSE	NA	NA	NA	NA	NA	207	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTCGTGTCTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	21681135	21678077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_21678100_21681100
80523	chr12	+	3603	6	Genic_Genomic	ENSMUSG00000113959.2_ENSMUSG00000116705.2	novel	393	1	NA	NA	-104057	953	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	124	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	19247596	19459694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_19248320_19352533_19352724_19456267_19456977_19457144_19457946_19458467_19459376_19459422
80524	chr1	+	3717	6	NIC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	-73	3	intron_retention	FALSE	canonical	3	232	junction_2	24.6203168135587	6	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGACACACTGTATTTC	NA	False	NA	NA	False	NA	NA	NA	58484713	58501428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_58484794_58486792_58487249_58489545_58491375_58494755_58494895_58496938_58497023_58500299
80525	chr2	-	3154	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	-582	-4	-136	0	multi-exon	FALSE	canonical	3	144	junction_2	91.5	230	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	NA	False	NA	NA	NA	152673168	152622587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152624203_152671346_152672023_152672305
80526	chr14	-	2146	1	NIC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	4	-906	mono-exon	FALSE	NA	NA	NA	NA	NA	6	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCTACAATCAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	31923832	31921686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_31921700_31923800
80527	chrM	+	967	2	Genic_Genomic	ENSMUSG00000064351.1_ENSMUSG00000064353.1	novel	1545	1	NA	NA	362	-68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	283	False	NA	0	True	NA	NA	NA	5689	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_6605_6891
80528	chr5	+	7036	39	ISM	ENSMUSG00000029104.16	ENSMUST00000080036.3	13215	67	81088	2279	32823	-2279	3prime_fragment	FALSE	canonical	3	38	junction_2	18.6788724769005	70	44	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGCCCAGAGTAACCAGG	1061	False	NA	NA	False	NA	NA	NA	35000175	35067599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_35000246_35003333_35003412_35004797_35005022_35006074_35006154_35006280_35006443_35008562_35008619_35009426_35009576_35010103_35010241_35012018_35012136_35021589_35021713_35021989_35022223_35023918_35024062_35028053_35028262_35033249_35033392_35034073_35034254_35034368_35034546_35034771_35034849_35036146_35036286_35037147_35037271_35040193_35040408_35041315_35041462_35042695_35042874_35043848_35043945_35046673_35046862_35048694_35048822_35051688_35051790_35052682_35052838_35053227_35053368_35054231_35054315_35055872_35056004_35056140_35056271_35057115_35057272_35060552_35060744_35062657_35062773_35062874_35063089_35063442_35063549_35064427_35064591_35064776_35064938_35065975
80529	chr11	-	2663	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	-84	-535	-84	0	multi-exon	TRUE	canonical	3	305	junction_7	61.1714853284106	366	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTTAAGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	21321285	21271137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
80530	chr2	-	1989	10	NIC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	2	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	135.671535084183	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACCATTTCGTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	73044754	72923149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73043203_73043305_73044629
80531	chr9	-	2156	13	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-238	-2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	73.251090245963	8	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGTGAGCACTATGGCC	NA	False	NA	NA	False	NA	NA	NA	61840058	61826186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_61826253_61826893_61826976_61827156_61827240_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356
80532	chr17	+	2569	4	NIC	ENSMUSG00000002660.9	novel	983	6	NA	NA	-64	-5	intron_retention	FALSE	canonical	3	1307	junction_2	51.9807656734681	10	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATGTCTGAAGCACCTT	NA	False	NA	NA	False	NA	NA	NA	57297240	57303183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_57297678_57298293_57300014_57300447_57300554_57302877
80533	chrX	+	3898	11	NIC	ENSMUSG00000079487.12	novel	6816	45	NA	NA	98	-1986	intron_retention	FALSE	canonical	3	91	junction_6	9.8772465798926	11	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCCAGTGTAGGGCACTCC	NA	False	NA	NA	False	NA	NA	NA	100317733	100325548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100321559_100321669_100322166_100322950_100323078_100324161_100324392_100324773
80534	chr19	-	1924	3	NNC	ENSMUSG00000024742.16	novel	2341	2	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	416	2	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2155	False	NA	NA	False	NA	NA	NA	10181307	10176501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10178023_10178314_10178462_10181051
80536	chr11	-	6520	19	NIC	ENSMUSG00000033909.18	novel	5655	21	NA	NA	24	-232	intron_retention	FALSE	canonical	3	124	junction_6	18.4116173738482	4	120	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCCCATCCCCACCCCCA	NA	False	NA	NA	False	NA	NA	NA	118181033	118151911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_118152374_118152804_118152957_118153214_118153331_118153860_118153963_118154468_118154669_118155523_118156067_118158627_118158759_118159369_118160039_118162957_118163097_118163776_118163878_118164341_118164483_118165793_118165906_118166964_118167048_118167585_118167657_118168093_118168162_118170030_118170134_118170641_118170753_118175684_118178650_118180782
80537	chr17	+	2349	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	-72	-252	-51	0	multi-exon	TRUE	canonical	3	220	junction_6	33.8230690505755	469	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9172	False	NA	NA	False	NA	NA	NA	57071705	57077093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
80538	chr9	+	955	1	ISM	ENSMUSG00000047412.17	ENSMUST00000115222.10	8861	6	40174	4111	16568	1541	mono-exon	FALSE	NA	NA	NA	NA	NA	27	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTTTGTAAGGCCAACA	NA	False	NA	NA	False	NA	NA	NA	30982115	30983070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_30982100_30983100
80539	chrX	+	1596	11	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	3	32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1219.1637953942	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAAGTTTGTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	161543460	161561784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543612_161552618_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343_161561488_161561526
80540	chr17	+	3398	24	NNC	ENSMUSG00000034709.9	novel	1112	5	NA	NA	-20261	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	26.3634621418709	5	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAACTTTTCGGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	88817284	88895789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88817439_88826159_88826398_88828895_88828968_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
80541	chr4	+	2178	9	NNC	ENSMUSG00000006215.13	novel	3478	15	NA	NA	-13	22	intron_retention	TRUE	canonical	0	0	junction_7	68.2320260215099	1	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTATCATCCACACCGGTG	NA	False	NA	NA	False	NA	NA	NA	141171951	141193401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_141172114_141174561_141174649_141189096_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141192401_141192834_141193154_141193287
80542	chr9	-	1862	10	NNC	ENSMUSG00000032218.8	novel	1531	9	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	583.780611590635	2734	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATCCTGTGTATATTTGT	NA	False	NA	NA	False	NA	NA	NA	70328829	70314969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70318540_70318727_70319982_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
80543	chr1	-	5907	10	FSM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	414	-823	414	823	multi-exon	TRUE	canonical	3	237	junction_4	21.0736509753792	305	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATATTACCCAACTGTT	342	False	NA	NA	False	NA	NA	NA	46892792	46845880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
80544	chr16	-	3458	17	NIC	ENSMUSG00000022771.18	novel	3088	20	NA	NA	0	0	intron_retention	FALSE	canonical	3	691	junction_4	40.1068397377555	5	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCTGGTGCCGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	16929100	16906469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16910656_16910874_16910951_16912746_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
80545	chr5	+	3447	7	NNC	ENSMUSG00000032840.8	novel	5649	5	NA	NA	26	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	85.9335983962811	334	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGAATCCCGCTACATGC	1665	False	NA	NA	False	NA	NA	NA	118383317	118404141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164_118399994_118400129_118400226_118402248
80546	chr5	+	2043	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	-199	-11	-199	11	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	47	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGACGTGTGGATTGTGC	NA	False	NA	NA	False	NA	NA	NA	100187644	100216630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
80547	chr5	+	2134	15	FSM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	-60	-56	-60	56	multi-exon	TRUE	canonical	3	351	junction_8	24.4791664857432	3	81	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAATTCAGCAGAGACA	NA	False	NA	NA	False	NA	NA	NA	31350510	31356300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
80548	chr14	-	1705	9	NIC	ENSMUSG00000041028.17	novel	2573	9	NA	NA	46	-1000	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	1786.95934131138	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTCATATTGTGGAAGC	NA	False	NA	NA	False	NA	NA	NA	36857050	36843780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856743
80549	chr5	+	3517	7	NNC	ENSMUSG00000029177.10	novel	993	7	NA	NA	-5	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	781.983944137531	4	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAATTGAAGTAAAGTTAC	9219	False	NA	NA	False	NA	NA	NA	30824273	30832169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30825491_30825654_30826251_30826592_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
80550	chr17	+	5992	10	NIC	ENSMUSG00000024188.17	novel	4934	10	NA	NA	-8	-7	intron_retention	FALSE	canonical	3	162	junction_1	172.384010028715	20	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTTGCTCTTGTCAGGT	NA	False	NA	NA	False	NA	NA	NA	26471916	26504471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
80551	chr18	+	5584	26	ISM	ENSMUSG00000024597.12	ENSMUST00000115366.3	6520	27	17656	17	17656	-17	3prime_fragment	TRUE	canonical	3	112	junction_6	18.0133283987163	35	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGTTTAATACTTACTC	NA	False	NA	NA	False	NA	NA	NA	58029405	58079876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_58029474_58030415_58030492_58031130_58031227_58032331_58032472_58033093_58033205_58034427_58034537_58037195_58037324_58037409_58037495_58039024_58039177_58043312_58043421_58044961_58045086_58045908_58046011_58047177_58047334_58048480_58048581_58052527_58052640_58054817_58054959_58059478_58059586_58063226_58063307_58065551_58065678_58068022_58068071_58069379_58069503_58070731_58070844_58073206_58073294_58074080_58074217_58074824_58074893_58076987
80552	chr15	+	3363	14	Fusion	ENSMUSG00000023048.14_ENSMUSG00000056851.15	novel	3222	14	NA	NA	230	6	intron_retention	FALSE	non_canonical	0	0	junction_9	211.826126085305	10	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTTTTCTTTGTGAATA	2665	False	NA	NA	False	NA	NA	NA	102367896	102407322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_+_102368017_102368542_102368582_102368804_102369155_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392588_102392676_102395522_102395565_102396639_102398243_102399068_102399239_102406923
80553	chr5	+	1556	11	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-48	-413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	802.000430174448	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATGCATTTTCAAGCCA	NA	False	NA	NA	False	NA	NA	NA	45650797	45669620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663562_45668439_45668560_45669222
80554	chr2	+	3071	5	Antisense	novelGene_ENSMUSG00000039483.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTTATCCTACCACTCC	768	False	NA	97	True	NA	NA	NA	30713115	30718300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_30714517_30714651_30714739_30715462_30715573_30715666_30715774_30716934
80555	chr1	-	2675	7	FSM	ENSMUSG00000026577.14	ENSMUST00000120447.8	2430	7	-27	-218	-27	218	multi-exon	FALSE	canonical	3	158	junction_1	15.0738920727933	327	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGCCCTTTCCTTTCA	NA	False	NA	NA	False	NA	NA	NA	164135085	164118739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715
80556	chr8	+	3658	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	-46	938	-46	-938	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	2306	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGCCTTTGAGCAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	72914997	72936810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
80557	chr6	-	2703	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	64	81	-63	-81	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	424	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATGAATGTACAAACTTAA	NA	False	NA	NA	False	NA	NA	NA	113354780	113343066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
80558	chr16	+	2746	4	NNC	ENSMUSG00000086965.2	novel	865	3	NA	NA	-20	2296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	95.5731249997729	82	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGTTGACTTAACTGCTGA	NA	False	NA	NA	False	NA	NA	NA	18317630	18322704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18317702_18317795_18317891_18319689_18321037_18321471
80559	chr11	-	4608	13	NNC	ENSMUSG00000015837.16	novel	2673	8	NA	NA	0	24492	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	375.072104179094	854	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCGCCGTGAGCTCGGGC	NA	False	NA	NA	False	NA	NA	NA	50101618	50065700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50065777_50067651_50067713_50073317_50073406_50085032_50085109_50087768_50087918_50088443_50088528_50090356_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
80560	chr11	-	4030	10	FSM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	-206	0	-206	0	multi-exon	FALSE	canonical	3	68	junction_6	5.79484658240235	239	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCCAGAGTTCATGTTG	NA	False	NA	NA	False	NA	NA	NA	86999740	86979978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86982692_86987788_86987886_86987960_86988021_86989488_86989605_86990200_86990300_86992207_86992472_86994012_86994136_86994365_86994517_86996834_86996968_86999466
80561	chr19	+	2825	14	FSM	ENSMUSG00000025217.16	ENSMUST00000111936.4	2064	14	-100	-661	-1	-63	multi-exon	FALSE	canonical	3	132	junction_1	132.758623339525	42	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCACTGGCGAGGCTTG	NA	False	NA	NA	False	NA	NA	NA	45352171	45518389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_45352326_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
80562	chrX	-	2055	10	NNC	ENSMUSG00000057836.13	novel	1584	9	NA	NA	-1	12341	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	589.847019296393	5111	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTTTGAATGTCTCCTA	NA	False	NA	NA	False	NA	NA	NA	72140702	72117557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72117755_72129703_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
80563	chr1	-	3915	4	FSM	ENSMUSG00000090553.9	ENSMUST00000164096.2	669	4	-4	-3242	-4	1026	multi-exon	FALSE	canonical	3	3763	junction_2	133.057214093119	58	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGTTGTCTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	133537991	133530582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_133534318_133536634_133536698_133537455_133537483_133537901
80564	chr4	+	2560	10	NIC	ENSMUSG00000035649.18	novel	2503	9	NA	NA	-6	2	combination_of_known_junctions	FALSE	canonical	3	7	junction_8	42.6744784515419	208	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAATAAATGTGTTTATT	4	True	NA	NA	False	NA	NA	NA	44756581	44932205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_44756697_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44929580_44929646_44931035
80565	chr19	-	5012	14	ISM	ENSMUSG00000046324.13	ENSMUST00000159692.8	7058	15	2145	1668	-243	320	3prime_fragment	FALSE	canonical	3	290	junction_6	31.9528128420756	160	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGGAAGATCCGGAGTAT	NA	False	NA	NA	False	NA	NA	NA	29623670	29587281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_29590080_29590168_29590333_29593122_29593239_29593916_29594120_29595217_29595371_29600468_29600660_29601040_29601216_29604246_29604468_29606003_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366
80566	chr14	-	1367	7	NNC	ENSMUSG00000022185.20	novel	4048	18	NA	NA	1455	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	157.265963683606	24	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATTTGAGTGCCTTTCCT	9210	False	NA	NA	False	NA	NA	NA	54899708	54879621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54880294_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624
80567	chr2	-	3372	12	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	21	824	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	221.325533401678	8	96	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTATACCCTTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	165717676	165668224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687519_165687842_165688026_165688160_165693919_165694069_165717624
80568	chr12	+	3447	13	NIC	ENSMUSG00000021222.10	novel	2008	14	NA	NA	-50	67	intron_retention	FALSE	canonical	3	216	junction_8	24.4817108606949	12	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAAAGGTATGTACTTCT	NA	False	NA	NA	False	NA	NA	NA	83567357	83588761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
80570	chr13	-	3711	7	NNC	ENSMUSG00000113204.2	novel	1989	6	NA	NA	16	-2	intron_retention	FALSE	canonical	0	0	junction_3	41.8077611083025	1	140	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCCATGGTCATGATG	4842	False	NA	NA	False	NA	NA	NA	74765805	74753065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74755855_74757240_74757302_74758318_74758446_74759380_74759507_74760842_74761068_74765320_74765407_74765508
80571	chr8	-	2630	10	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	0	4	intron_retention	FALSE	non_canonical	0	0	junction_2	70.9381577306757	3	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578633	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106571628_106571705_106572292_106572634_106573024_106573279_106573433_106573615_106573811_106575382_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
80572	chr5	-	4517	17	NNC	ENSMUSG00000045078.13	novel	4474	17	NA	NA	-9279	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_16	54.6281463624751	6	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTCTGTTTGTCCC	4985	False	NA	NA	False	NA	NA	NA	143108028	142976647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143107889
80573	chr15	-	7689	25	FSM	ENSMUSG00000051786.16	ENSMUST00000109353.9	7635	25	-63	9	-38	-9	multi-exon	TRUE	canonical	3	40	junction_22	13.0596920161065	55	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCGGACTGATGAGTTT	NA	False	NA	NA	False	NA	NA	NA	89007353	88982568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_88984707_88984787_88984988_88985068_88985283_88985355_88985489_88985564_88985760_88985977_88986120_88986203_88986373_88986456_88986611_88986747_88986807_88987019_88988494_88988621_88988694_88988936_88989076_88990274_88990391_88990471_88990561_88990645_88990728_88991615_88991766_88992153_88992294_88992763_88992856_88993149_88993260_88993423_88993500_88994248_88994371_88995318_88995493_89000247_89000459_89004712_89004877_89006279
80574	chr11	+	835	5	Antisense	novelGene_ENSMUSG00000018565.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1643	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACTTTTATTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	69859276	69862210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69859367_69859921_69860025_69860320_69860415_69861386_69861598_69861873
80575	chr4	+	4149	11	Antisense	novelGene_ENSMUSG00000028838.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	87	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGCCACACCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	134083683	134099890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_134085141_134085287_134085460_134086397_134086553_134087052_134087149_134087844_134087931_134089609_134089718_134089892_134090029_134090395_134090520_134091897_134091999_134092207_134092299_134098267
80576	chr12	-	6549	13	NNC	ENSMUSG00000071456.7	novel	3569	3	NA	NA	-77584	-19685	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	117	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAAGCAGCTTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	3554595	3476908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_3477212_3492472_3492557_3501658_3501769_3507059_3507208_3519475_3519592_3524487_3524611_3526021_3526170_3534444_3534607_3539634_3539732_3543731_3543838_3546222_3546935_3549976_3553911_3554089
80577	chr17	-	2575	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	74	0	-15	0	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	39314	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149124	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
80578	chr17	-	2571	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	78	0	-11	0	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	39461	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149120	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
80579	chr17	-	2520	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	273	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGGCTGTGTGCTCATT	NA	False	NA	NA	False	NA	NA	NA	36149124	36144809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36144954_36145011_36146932_36147054_36147166_36147519_36147629_36148888
80580	chr17	-	2564	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	74	11	-15	-11	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	3069	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGGAAAAAGGCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	36149124	36144823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
80581	chr9	+	5912	25	Antisense	novelGene_ENSMUSG00000034218.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	90	24	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCGTAGAGCAAGGCCGT	6628	False	NA	NA	False	NA	NA	NA	53348437	53382693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_53351230_53351330_53351465_53352970_53353036_53353704_53353821_53355290_53355379_53356644_53356810_53359351_53359501_53361815_53361934_53362847_53362988_53364650_53364736_53364831_53364970_53365587_53365748_53366015_53366130_53367067_53367272_53367789_53368005_53368673_53368794_53370104_53370282_53371015_53371246_53372188_53372317_53373784_53373888_53375453_53375601_53376330_53376437_53376527_53376614_53379263_53379355_53382652
80582	chr7	-	855	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5582.89117652215	11	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	8406	False	NA	NA	False	NA	NA	NA	99132874	99128088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129078_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
80583	chr4	+	4093	19	FSM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	375	0	-34	0	multi-exon	FALSE	canonical	3	1050	junction_10	116.73236245551	438	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGTTGAAAAGCCCTT	NA	False	NA	NA	False	NA	NA	NA	109534159	109821157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_109534270_109567986_109568056_109577952_109578000_109584586_109584790_109593787_109593880_109600062_109600155_109614776_109614883_109651964_109652052_109687002_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
80584	chr4	-	1209	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	36	20	36	-20	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	21	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAGTTAGGCTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	133695276	133692068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
80585	chr1	-	4370	3	NIC	ENSMUSG00000001305.6	novel	3092	4	NA	NA	-3	2	intron_retention	FALSE	canonical	3	1054	junction_2	5	51	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATCTCTGCTTCCCTGCT	NA	False	NA	NA	False	NA	NA	NA	186481525	186453286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_186453744_186468312_186472061_186481360
80586	chr17	-	2374	7	NNC	ENSMUSG00000023988.9	novel	3854	7	NA	NA	266	-1050	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	170.928266305554	7	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGGTTTGGTCTGTTGA	2607	False	NA	NA	False	NA	NA	NA	47922151	47911305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47912824_47913316_47913420_47913562_47913724_47914780_47914915_47915179_47915319_47917763_47917850_47921918
80587	chr4	+	4773	13	NNC	ENSMUSG00000011257.20	novel	2700	14	NA	NA	-32	-7	intron_retention	FALSE	canonical	0	0	junction_1	115.286599394726	5	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAATATGGCTGAATTT	NA	False	NA	-59	True	NA	NA	NA	123176585	123192608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_123176868_123177356_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123191566_123191653_123191887_123192305
80588	chr10	-	2418	5	NNC	ENSMUSG00000020107.11	novel	1379	5	NA	NA	11	837	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	149.016777578902	23	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGGCGTGAATCATTC	NA	False	NA	NA	False	NA	NA	NA	59838897	59822393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_59822809_59823019_59824661_59826654_59826730_59832269_59832437_59838777
80590	chr9	+	4886	23	NNC	ENSMUSG00000032115.15	novel	4432	26	NA	NA	-332	-8	intron_retention	FALSE	non_canonical	0	0	junction_10	175.363359488919	2	221	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTATAGGTTGTATGTGTT	NA	False	NA	NA	False	NA	NA	NA	44291493	44303652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44292207_44292350_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296551_44296879_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
80591	chr2	+	2925	17	NNC	ENSMUSG00000019715.15	novel	4030	16	NA	NA	-35	-953	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	132.470500843584	3	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTCCTGATATGTGGT	NA	False	NA	NA	False	NA	NA	NA	29825499	29849430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832646_29832735_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
80592	chr12	+	2254	18	NNC	ENSMUSG00000054309.10	novel	2499	18	NA	NA	12	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	203.492958313169	1	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATAACCTTAGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	21336411	21364816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21349993_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
80593	chr5	-	4406	3	FSM	ENSMUSG00000106241.2_ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	3	-1162	3	1162	multi-exon	FALSE	canonical	3	77	junction_1	2.5	198	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCCATGAGAAAGATCCTG	NA	False	NA	NA	False	NA	NA	NA	25910820	25893647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_25897827_25903248_25903331_25910675
80594	chr14	-	3682	4	FSM	ENSMUSG00000006288.9	ENSMUST00000226768.2	2366	4	-27	-1289	-3	-884	multi-exon	FALSE	canonical	3	834	junction_3	1.69967317119759	67	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACAGATGGTTGTGAGCCA	NA	False	NA	NA	False	NA	NA	NA	51022979	51011617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_51014870_51015213_51015426_51018931_51019065_51022894
80595	chr5	-	4825	26	Intergenic	novelGene_667	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGGCGGCGGCGGCAG	6063	False	NA	NA	False	NA	NA	NA	23706807	23639441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_23639780_23655147_23655335_23668013_23668128_23669699_23669929_23672103_23672185_23676743_23676803_23678476_23678652_23681483_23681521_23683509_23683741_23683848_23683980_23686204_23686323_23687397_23687509_23690343_23690606_23691295_23691398_23697264_23697428_23698193_23698504_23700981_23701237_23701397_23701545_23701967_23702219_23702534_23702592_23702723_23703290_23704276_23704590_23705252_23705342_23705447_23705573_23705722_23705809_23706519
80596	chr7	+	4489	6	FSM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	31	-914	31	-5	multi-exon	FALSE	canonical	2	5	junction_5	149.360503480673	369	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGAGGTGACTGTACGTGC	NA	False	NA	NA	False	NA	NA	NA	79674612	79742492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79738282_79738381_79740082
80597	chr6	-	2266	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	-33	-362	-33	-3	multi-exon	FALSE	canonical	3	112	junction_4	48.7748334184751	670	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACTGGAGGGACTTGG	5232	False	NA	NA	False	NA	NA	NA	126916583	126900015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
80598	chr13	-	3034	1	Intergenic	novelGene_1432	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGTCATTTTCTAAAAACA	NA	False	NA	NA	False	NA	NA	NA	66217038	66214004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66214000_66217000
80599	chr5	+	2938	7	NNC	ENSMUSG00000018604.19	novel	4777	8	NA	NA	-698	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	290.68635254438	52	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	119808035	119822789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_119808126_119808957_119809123_119809297_119810470_119812090_119812359_119813307_119813368_119813622_119813750_119821733
80600	chr11	+	2777	10	NIC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	0	-10	intron_retention	FALSE	canonical	3	2673	junction_3	107.609375882298	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCAAGGATCTTGTGCGT	NA	False	NA	NA	False	NA	NA	NA	107370309	107388989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107386592_107388349
80601	chr7	+	3718	21	Antisense	novelGene_ENSMUSG00000032637.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	291	128	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCGAGGAGGGGGCCGT	NA	False	NA	NA	False	NA	NA	NA	126090884	126101189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126092039_126092406_126092546_126092720_126092846_126092934_126093063_126093310_126093504_126093593_126093670_126093756_126093898_126094376_126094444_126094532_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096539_126096666_126096837_126097274_126097484_126098328_126098414_126099300_126099433_126099900_126100046_126100274_126100346_126100426_126100479_126101101
80602	chr13	+	3782	11	Antisense	novelGene_ENSMUSG00000034928.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	256	10	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTCGCTTTCTGTTCCGTT	NA	False	NA	NA	False	NA	NA	NA	54827215	54835998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_54829624_54829745_54829844_54829922_54830046_54830137_54830232_54830394_54830515_54830601_54830768_54830857_54831030_54831407_54831578_54831774_54831900_54832150_54832301_54835842
80604	chr8	+	2108	9	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	2595	3309	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGCGGTGGCTCATGCTG	NA	False	NA	-51	True	NA	NA	NA	73214328	73218154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73215202_73215279_73215465_73215591_73215688_73215823_73215949_73216022_73216165_73216247_73216335_73216644_73216781_73216923_73217167_73217933
80605	chr12	-	2529	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	30	420	20	381	multi-exon	FALSE	canonical	3	148	junction_1	0	684	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGGAGTCGGATGACGA	6440	False	NA	NA	False	NA	NA	NA	75716281	75677789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_75680283_75716245
80606	chr12	-	7333	10	Fusion	ENSMUSG00000112308.2_ENSMUSG00000071456.7	novel	586	4	NA	NA	-4	1849	intron_retention	FALSE	non_canonical	0	0	junction_1	28.181948517131	210	44	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAGAAAAACAGAAAAGGAT	NA	False	NA	NA	False	NA	NA	NA	3476751	3415398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_3417530_3437549_3437652_3438132_3438256_3439620_3439748_3440441_3440555_3451682_3451791_3452431_3452604_3452786_3456712_3457643_3457925_3476500
80607	chr17	-	3154	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	30	1827	intron_retention	FALSE	canonical	3	13	junction_5	79.6415438712992	62	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTTTAAGTGGCTCAT	NA	False	NA	NA	False	NA	NA	NA	37300366	37278259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281958_37298307_37298416_37298546_37298823_37299396
80608	chr7	-	6005	25	NIC	ENSMUSG00000045659.19	novel	5149	27	NA	NA	8	-2574	intron_retention	FALSE	canonical	3	228	junction_2	22.2382537658773	49	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATGCCCTGGCCTCTGA	NA	False	NA	NA	False	NA	NA	NA	115907582	115727837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_115727929_115728626_115728761_115731855_115734475_115735152_115735257_115736221_115736340_115736424_115736614_115739511_115739739_115739850_115739960_115741932_115742035_115742524_115742675_115744150_115744232_115744404_115744474_115753867_115753922_115756716_115756804_115757091_115757615_115763266_115763732_115769896_115770073_115774946_115775048_115776120_115776194_115779628_115779734_115780408_115780521_115788504_115788589_115907159_115907218_115907306_115907384_115907485
80609	chr10	+	1708	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	90	118	57	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	5055	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	127919231	127926142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
80610	chr11	+	3929	5	FSM	ENSMUSG00000020453.18	ENSMUST00000093402.12	3173	5	-190	-566	-172	566	multi-exon	FALSE	canonical	0	0	junction_4	189.564467925822	553	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATATTTCTTTTTTCTTTTT	6280	False	NA	NA	False	NA	NA	NA	3240266	3259649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256287_3256361_3257647
80611	chr19	-	3307	7	NNC	ENSMUSG00000040451.19	novel	3665	10	NA	NA	-3435	-7	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_6	68.5362839831736	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAAGTATGTGGCTATT	4141	False	NA	NA	False	NA	NA	NA	32219661	32100136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32200908_32200991_32219503
80612	chr3	+	4333	22	FSM	ENSMUSG00000028059.17	ENSMUST00000029694.14	4300	22	21	-54	2	54	multi-exon	FALSE	canonical	3	163	junction_1	44.2621032808889	105	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACTCGTTTGCATCTT	NA	False	NA	NA	False	NA	NA	NA	88528433	88555413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88528629_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
80613	chr12	-	2749	10	NNC	ENSMUSG00000041645.15	novel	2850	9	NA	NA	-17	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	264.313366206773	1	113	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCAGAGACATCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	103392106	103374251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390621_103390738_103390857_103392037
80614	chr11	+	3930	14	Antisense	novelGene_ENSMUSG00000032782.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACCGCTTGCAATCCCG	NA	False	NA	NA	False	NA	NA	NA	69193942	69214628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69194094_69195086_69195144_69196309_69196456_69198768_69199027_69200172_69200333_69200800_69200927_69202157_69202301_69205541_69205683_69206014_69206258_69209774_69209869_69210177_69210296_69210683_69211807_69212186_69212246_69213517
80615	chr5	+	2400	5	Intergenic	novelGene_702	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	638	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAGGACCCGCAGACCA	NA	False	NA	NA	False	NA	NA	NA	34310899	34326873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_34311450_34320865_34321095_34323258_34323698_34324746_34325791_34326735
80616	chr2	-	8220	27	NIC	ENSMUSG00000057182.16	novel	8550	27	NA	NA	173	-35	combination_of_known_junctions	FALSE	canonical	2	3	junction_15	2.69697397819357	23	126	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGTTTGTCAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	65397663	65288641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_65292082_65295058_65295330_65297265_65297371_65298410_65298549_65299355_65299410_65300269_65300543_65302622_65302746_65312494_65312669_65313386_65313542_65314689_65314811_65325266_65325741_65327713_65328071_65329210_65329385_65336360_65336600_65337490_65337624_65338792_65339007_65344815_65345107_65351166_65351374_65352135_65352278_65354489_65354554_65354947_65355221_65356220_65356313_65356840_65356970_65359733_65359824_65361147_65361267_65366756_65367071_65397609
80617	chr7	+	2226	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-3	443	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	108.693376063125	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGTTGGGGACACTCTT	NA	False	NA	NA	False	NA	NA	NA	42863477	42876709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42870265_42870636_42872998_42873126_42873324_42873386_42875135
80619	chr7	+	1957	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	22	425	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	108.693376063125	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCGAATAAATATTGAATTCC	NA	False	NA	NA	False	NA	NA	NA	42863502	42876691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42870265_42870410_42872998_42873126_42873324_42873386_42875135
80620	chr7	-	1781	6	Antisense	novelGene_ENSMUSG00000074887.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCACCTGGAAGCACCCGC	NA	False	NA	NA	False	NA	NA	NA	42876739	42863456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_42863571_42870264_42870307_42872998_42873132_42873329_42873384_42875133_42875642_42875809
80621	chr7	+	3453	24	ISM	ENSMUSG00000039187.17	ENSMUST00000036865.13	4645	38	13	14154	13	419	5prime_fragment	FALSE	canonical	3	260	junction_14	34.8798640326168	6	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCCCAGACAGAACCTG	NA	False	NA	NA	False	NA	NA	NA	79042072	79085858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944
80622	chr9	-	1590	9	FSM	ENSMUSG00000011114.19	ENSMUST00000117654.3	1984	9	-30	424	-30	-5	multi-exon	FALSE	canonical	3	1493	junction_6	94.6836839165017	5520	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTTATTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	37568638	37560482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
80623	chr9	-	3189	6	Antisense	novelGene_ENSMUSG00000047412.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	254	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTCTTCCCCGCCAGG	NA	False	NA	NA	False	NA	NA	NA	30981834	30942214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_30942253_30964534_30965608_30973334_30973419_30975522_30975637_30977952_30978037_30980038
80624	chr2	+	6774	3	NIC	ENSMUSG00000055612.16	novel	614	5	NA	NA	-39	-141	intron_retention	FALSE	canonical	3	1115	junction_2	132	2	156	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGGGGTACAGTAGTAT	8624	False	NA	NA	False	NA	NA	NA	72306557	72316405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_72306656_72309249_72312293_72312772
80625	chr19	-	3056	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	-60	7	-60	-7	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	507	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCAATTCACCTTGCT	NA	False	NA	NA	False	NA	NA	NA	10926690	10918851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
80626	chr11	-	4399	6	Fusion	ENSMUSG00000044795.13_ENSMUSG00000045377.6	novel	753	4	NA	NA	-1046	978	multi-exon	FALSE	non_canonical	0	0	junction_4	19.8353220291479	6566	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAATTCATCTGCAATAA	NA	False	NA	NA	False	NA	NA	NA	69287503	69281772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_69284695_69285453_69285673_69285797_69285875_69285959_69286798_69287001_69287184_69287342
80627	chr6	-	4579	3	NNC	ENSMUSG00000030035.15	novel	620	3	NA	NA	49	2944	intron_retention	FALSE	canonical	0	0	junction_1	0	188	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACGCCGTCTCCCTGTTCA	NA	False	NA	NA	False	NA	NA	NA	83098191	83093080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83093225_83093604_83093810_83093961
80629	chr9	+	1951	17	NNC	ENSMUSG00000003402.15	novel	2228	18	NA	NA	112	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	214.311825604072	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCACATTGTGTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	21914624	21925512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922864_21923015_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
80630	chr9	+	1696	5	ISM	ENSMUSG00000042557.15	ENSMUST00000049169.6	4845	20	30886	8	4006	-6	3prime_fragment	FALSE	canonical	3	329	junction_2	22.5319217999708	21	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAGTAACATAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	57024750	57035642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
80631	chr11	-	1640	7	NIC	ENSMUSG00000056962.12	novel	2072	6	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	130.186298135488	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGGACAGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	116734197	116728258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_116728590_116729815_116729955_116730663_116730753_116731273_116731372_116731894_116732182_116733157_116733547_116733890
80632	chr11	+	4751	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	-21	-2485	3	2485	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	3719	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGCCTGATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	80274107	80289559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
80633	chr5	-	2807	4	NIC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	37	-15	combination_of_known_splicesites	FALSE	canonical	3	193	junction_3	15.5134350376268	1	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGCCTATCTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	105007899	104961049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_104963302_104964564_104964626_104964862_104964990_105007532
80634	chr17	-	2599	20	NNC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	139.4867719778	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTTGTGGAGACAGCT	NA	False	NA	NA	False	NA	NA	NA	24746820	24727828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732080_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
80635	chr1	+	3436	6	ISM	ENSMUSG00000026280.18	ENSMUST00000135762.8	4186	12	24546	-1245	-4752	-1186	3prime_fragment	FALSE	canonical	3	280	junction_3	25.3298243183801	5	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACAAAGTCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	93707312	93717146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
80636	chr4	-	8865	1	ISM	ENSMUSG00000039967.15	ENSMUST00000098163.9	9941	8	70939	14	70939	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	144	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTTTCAACAACTGAAT	NA	False	NA	NA	False	NA	NA	NA	34811991	34803126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_34803100_34812000
80637	chr4	+	3090	9	NIC	ENSMUSG00000035601.10	novel	983	8	NA	NA	-664	947	combination_of_known_junctions	FALSE	canonical	1	6	junction_1	97.4461389691762	871	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCCTAAACAAGGTTCCT	2587	False	NA	NA	False	NA	NA	NA	45299749	45317078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_45299898_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
80638	chr4	-	905	3	NIC	ENSMUSG00000028322.12	novel	1077	4	NA	NA	-5	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	240.5	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATATTTGTAGTTCTACA	-2	True	NA	NA	False	NA	NA	NA	45320609	45316614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_45317029_45317677_45317830_45320270
80639	chr4	-	1057	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	4	16	4	-16	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	849	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTTGGTAGTGTCTATA	-18	True	NA	NA	False	NA	NA	NA	45320625	45316628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
80640	chr3	+	4076	8	NIC	ENSMUSG00000000561.15	novel	3682	10	NA	NA	-16	660	intron_retention	FALSE	canonical	3	910	junction_3	55.4613305256326	2	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTTCCCTCCCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	105866807	105875503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_105867015_105867268_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105873190_105873672_105873742_105874478
80641	chrX	-	2620	11	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	-81	156	combination_of_known_junctions	FALSE	canonical	3	132	junction_3	55.9360348970143	579	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACTTAAGTTCTTGGGAA	NA	False	NA	NA	False	NA	NA	NA	36374056	36355174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
80642	chr5	-	2194	1	NIC	ENSMUSG00000072763.3	novel	3341	4	NA	NA	10726	-3577	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGCAGTTTATGAGAGTC	NA	False	NA	NA	False	NA	NA	NA	109828181	109825987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_109826000_109828200
80643	chr11	+	1368	4	ISM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	8585	2	2757	1	3prime_fragment	FALSE	canonical	3	695	junction_1	147.368774017957	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTTGATACATGATTGA	NA	False	NA	NA	False	NA	NA	NA	80282713	80287072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_80282819_80285111_80285358_80285927_80286088_80286215
80644	chr3	+	3059	6	FSM	ENSMUSG00000028019.10	ENSMUST00000029652.4	3521	6	546	-84	-210	84	multi-exon	FALSE	canonical	3	60	junction_1	10.870142593361	251	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTCCAAGGAAAGGAAGAT	NA	False	NA	NA	False	NA	NA	NA	80944268	81121431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_80944862_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
80645	chr10	+	2539	14	FSM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	235	-134	-3	134	multi-exon	FALSE	canonical	3	168	junction_1	105.419758317817	493	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATTCATTGTTCTGCTTA	8453	False	NA	NA	False	NA	NA	NA	80062502	80079871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80062539_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
80646	chr4	-	2342	20	NNC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	247.812848246883	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATACATTGCTTCATTCT	15	True	NA	NA	False	NA	NA	NA	34614893	34570799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575162_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597435_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614748
80647	chr9	+	1154	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	4	-47	4	47	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	1712	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTTTTGTGTGCTGTGGG	NA	False	NA	NA	False	NA	NA	NA	14411916	14421920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
80648	chr6	-	4429	10	NIC	ENSMUSG00000002222.15	novel	6165	9	NA	NA	595	-16	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	48.3600181764305	154	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTAAAAAACTGTTTTTG	NA	False	NA	NA	False	NA	NA	NA	71417026	71365633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71368962_71370086_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110_71376278_71390233_71390335_71391768_71391904_71406001_71406145_71416981
80649	chr13	-	2727	2	NNC	ENSMUSG00000021678.10	novel	2741	2	NA	NA	-225	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACAAGTTCTT	9601	False	NA	NA	False	NA	NA	NA	95661960	95648236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_95650790_95661786
80650	chr8	+	1406	2	FSM	ENSMUSG00000031622.17	ENSMUST00000212677.2	493	2	-16	-897	-16	-5	multi-exon	FALSE	canonical	3	61	junction_1	0	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCAAGCCTCAGGGTCCT	NA	False	NA	NA	False	NA	NA	NA	73483296	73484824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_73483681_73483802
80651	chr15	+	2023	8	ISM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	-17	632	-17	-632	intron_retention	FALSE	canonical	3	1189	junction_6	79.2711698371289	3400	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGAATTGTTCCTAGAC	615	False	NA	NA	False	NA	NA	NA	78915056	78921921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952
80652	chr4	-	3031	16	NNC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	13	junction_12	264.741836512479	1	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGCTTGATGGCTGA	NA	False	NA	NA	False	NA	NA	NA	155845545	155825099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155839386_155839500_155840135_155840196_155840517_155840620_155841548_155841626_155845258
80653	chr19	+	2223	19	ISM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	-5	1437	-5	318	5prime_fragment	FALSE	canonical	3	621	junction_4	67.180910170658	16	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGACCTGGCTGCCAAGT	8564	False	NA	NA	False	NA	NA	NA	8734431	8746849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364
80654	chr19	-	3806	18	NIC	ENSMUSG00000025041.18	novel	7353	18	NA	NA	11	-10	combination_of_known_junctions	TRUE	canonical	1	5	junction_17	36.1371857478087	261	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCACCGTTTTCCTAAG	6970	False	NA	NA	False	NA	NA	NA	46950969	46875279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950842
80655	chr4	+	6625	11	NNC	ENSMUSG00000028820.14	novel	925	10	NA	NA	-536	-5	intron_retention	FALSE	canonical	3	45	junction_8	309.380817117028	702	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTGTCTTTGTTCAAG	NA	False	NA	NA	False	NA	NA	NA	126916639	126930801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126926599_126929600_126929648_126930355_126930443_126930724
80656	chr11	-	2882	5	FSM	ENSMUSG00000020268.15	ENSMUST00000144164.9	3431	5	306	243	3	-243	multi-exon	FALSE	canonical	3	120	junction_4	23.1557228347551	408	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACGGGTTTGTGTTACAG	NA	False	NA	NA	False	NA	NA	NA	54751432	54729427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_54732029_54739404_54739487_54741170_54741242_54744052_54744126_54751377
80657	chr8	-	1639	2	Genic_Genomic	ENSMUSG00000101431.2	novel	1597	1	NA	NA	-92	149	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCAGGTGACAGCATATG	NA	False	NA	NA	False	NA	NA	NA	76439916	76438078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_76438791_76438989
80658	chr2	-	6661	11	FSM	ENSMUSG00000039145.17	ENSMUST00000114987.4	1295	11	40	-5406	40	-24	multi-exon	FALSE	canonical	3	40	junction_3	6.22976725086901	92	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAGAATTAATCACCTT	1217	False	NA	NA	False	NA	NA	NA	5680817	5298291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_5303913_5306306_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5680724
80659	chr8	+	2630	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	0	751	0	0	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	1	114	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	75836196	75854316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
80660	chr11	-	1504	9	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	0	556	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	8329.23762173796	23	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTTTGGGCCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	33113072	33104370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110384_33111158_33111226_33111547_33111628_33112921
80661	chr11	-	1613	10	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	-2	556	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	7958.50576117259	6	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTTTGGGCCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	33113079	33104370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110875_33111160_33111226_33111547_33111628_33112921
80662	chr11	-	918	8	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	1449	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8901.25539644005	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATAAATTTTTAAATGAAT	NA	False	NA	NA	False	NA	NA	NA	33111623	33104947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106942_33107049_33109933_33109996_33110333_33110441_33110827_33110912_33111117_33111226_33111547
80663	SIRV3	-	1826	2	Genic_Genomic	SIRV3D	novel	161	1	NA	NA	-2905	34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGATCTTGACAGAACAAA	NA	False	NA	NA	False	NA	NA	NA	7667	4567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV3_-_4784_6057
80664	chr7	-	3785	6	NIC	ENSMUSG00000070822.6	novel	3626	6	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	14.3749782608531	2	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATGCCTCATTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	12509581	12502018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_12503673_12504730_12504821_12505590_12505670_12505935_12506043_12507367_12507518_12507876
80665	chr2	-	5698	15	NIC	ENSMUSG00000026933.18	novel	7981	17	NA	NA	40	285	combination_of_known_junctions	FALSE	canonical	3	81	junction_13	19.5427318291722	100	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCATGTGTGTGGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	25855722	25818257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25820041_25823602_25823722_25824231_25824348_25825473_25825577_25825861_25826071_25826526_25826664_25827957_25830326_25830876_25830962_25831389_25831482_25834437_25834616_25834953_25835051_25835145_25835286_25842689_25842832_25846258_25846340_25855674
80666	chr12	-	5641	2	FSM	ENSMUSG00000112980.2	ENSMUST00000220477.2	2941	2	5	-2705	5	2705	multi-exon	FALSE	canonical	2	13	junction_1	0	157	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAATCTCACAAGCACTAA	NA	False	NA	NA	False	NA	NA	NA	116368825	116362861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_116368264_116368586
80667	chr11	-	4340	11	NIC	ENSMUSG00000069910.3	novel	2505	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	143	junction_4	16.9068033643264	12	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	34724468	34700016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34716367_34721551_34721727_34724314
80668	chr2	-	4256	6	NNC	ENSMUSG00000074994.7	novel	8973	12	NA	NA	26784	-15290	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	35.9777709148302	43	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGATCCTGACACCATG	NA	False	NA	NA	False	NA	NA	NA	104620257	104600429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_104600526_104606544_104606735_104607663_104607798_104608481_104608599_104610279_104610606_104616864
80669	chr4	-	2059	19	NNC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	174.21789960624	1	15	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	15	True	NA	NA	False	NA	NA	NA	34614893	34570795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595173_34598596_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
80670	chr18	+	7779	14	Antisense	novelGene_ENSMUSG00000054008.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGATGCTGGGGAGAAAAG	5017	False	NA	NA	False	NA	NA	NA	60817578	60846697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_60822437_60823035_60823137_60824247_60824360_60825000_60825178_60828411_60828579_60830134_60830259_60831506_60831607_60832578_60832765_60833445_60833572_60835843_60836030_60836807_60836960_60838143_60838235_60840671_60841167_60845793
80672	chr13	-	2704	4	Intergenic	novelGene_1436	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	18.7320284243028	52	18	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTCGATGAAACCTGGAA	1673	False	NA	NA	False	NA	NA	NA	66439486	66415030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66415556_66415611_66417335_66417784_66417928_66439173
80673	chr16	+	3282	21	FSM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	21	-213	21	213	multi-exon	TRUE	canonical	3	293	junction_13	17.6705970470723	362	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAGTCAACATAGGGACT	NA	False	NA	NA	False	NA	NA	NA	20367347	20380342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
80674	chr7	+	2534	1	Antisense	novelGene_ENSMUSG00000044702.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGTAGTAATTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	121724523	121727057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_121724500_121727100
80675	chr14	-	1752	3	Antisense	novelGene_ENSMUSG00000012405.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCCATCTTGGCTCACCT	NA	False	NA	NA	False	NA	NA	NA	4201832	4199253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_4199409_4199645_4199788_4200377
80676	chr9	-	2543	4	ISM	ENSMUSG00000032803.16	ENSMUST00000190226.7	3107	5	977	-2	895	2	3prime_fragment	FALSE	canonical	3	85	junction_1	191.814725422447	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGAATGTGATGCTTTC	NA	False	NA	NA	False	NA	NA	NA	103241201	103230300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_103232513_103233478_103233639_103237074_103237218_103241173
80677	chr5	-	3217	5	NNC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	6	-1	intron_retention	FALSE	canonical	2	4	junction_1	357.222969586224	18	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGCTTGCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	130284313	130274572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_130277031_130277126_130277292_130279654_130279856_130282779_130282910_130284050
80678	chr8	-	2592	8	NNC	ENSMUSG00000052926.17	novel	2981	10	NA	NA	-705	-7	intron_retention	FALSE	canonical	2	3	junction_7	405.96330386087	142	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGCCACAAACTATGTTA	6713	False	NA	NA	False	NA	NA	NA	85694210	85683245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694032
80679	chr8	-	2571	6	NNC	ENSMUSG00000060427.16	novel	2259	5	NA	NA	32	177	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	63.0567997919336	311	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAATCCTATCCCATTCA	NA	False	NA	NA	False	NA	NA	NA	70078164	70063330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70076990_70077161_70078085
80680	chr4	-	1425	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	-5	0	-5	0	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	9040	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	NA	False	NA	NA	NA	116508882	116493706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
80681	chr17	-	3044	4	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	-67	12	intron_retention	FALSE	canonical	3	19	junction_3	86.5678924313166	207	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTCAGTGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	79202596	79192313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79200136
80682	chr4	+	2509	9	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6_ENSMUSG00000078496.10	novel	585	4	NA	NA	-5	2305	multi-exon	TRUE	non_canonical	0	0	junction_1	149.667496053752	1	105	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTCTGTATATTTAATT	4105	False	NA	NA	False	NA	NA	NA	147314735	147600248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314886_147323106_147323187_147409230_147409335_147413438_147413566_147596801_147597210_147597294_147597605_147597946_147598533_147599115_147599458_147599846
80683	chr5	+	4981	13	FSM	ENSMUSG00000029501.15	ENSMUST00000197188.5	4077	13	275	-1179	116	1	multi-exon	FALSE	canonical	3	178	junction_3	31.2021856428182	131	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGATGTCTGGGAGATGT	NA	False	NA	NA	False	NA	NA	NA	110379144	110404514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110379290_110382212_110382687_110384138_110384346_110385520_110385718_110385812_110386002_110389794_110389918_110392369_110392437_110397196_110397367_110398566_110398674_110399362_110399554_110400577_110401209_110401648_110401781_110402166
80684	chr4	-	3563	17	Antisense	novelGene_ENSMUSG00000028886.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	26	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGACCGCCTAACAATCCAC	NA	False	NA	NA	False	NA	NA	NA	132450457	132366337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_132366464_132383999_132384098_132389203_132389248_132394463_132394546_132397499_132397567_132400206_132400343_132417014_132417100_132420270_132420455_132422055_132422195_132426340_132426429_132428334_132428420_132431660_132431720_132434271_132434434_132437254_132437367_132439148_132439274_132446521_132446628_132448592
80685	chr7	-	774	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	11064	junction_6	2341.53010277942	269	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776699_44776919_44776993_44778123
80686	chr7	-	1136	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	-2	-5	intron_retention	FALSE	canonical	3	11064	junction_6	2341.53010277942	8	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778163	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776699_44776919_44776993_44778123
80687	chr11	+	3031	5	NNC	ENSMUSG00000014245.9	novel	573	7	NA	NA	50507	1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	139.877401677326	69	115	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	NA	False	NA	NA	NA	62399940	62406860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62400199_62400645_62400678_62402963_62403098_62403729_62405978_62406501
80688	chr19	+	2472	9	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	8	0	intron_retention	FALSE	canonical	3	194	junction_7	4.38570119821221	3	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6656	False	NA	NA	False	NA	NA	NA	8718883	8733006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
80689	chr4	+	1740	8	NIC	ENSMUSG00000028689.15	novel	1213	10	NA	NA	4	0	intron_retention	FALSE	canonical	3	27	junction_3	16.9187735359034	83	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5755	False	NA	NA	False	NA	NA	NA	116565904	116572296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
80690	chr6	-	3808	11	Antisense	novelGene_ENSMUSG00002075822.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCACGGCTCCGCCCGACG	NA	False	NA	NA	False	NA	NA	NA	42259755	42241953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_42242130_42244430_42244582_42244825_42244995_42245139_42245221_42245817_42245912_42246209_42246389_42250848_42250978_42253626_42253718_42256708_42256859_42257015_42257126_42257277
80691	chr16	-	3440	2	Antisense	novelGene_ENSMUSG00000060636.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTCCACAGGCGCCAAG	NA	False	NA	NA	False	NA	NA	NA	32880535	32876884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_32877547_32877757
80692	chr18	+	4793	1	NIC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	874	2605	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	74	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAGAAATCAGGTAAGTT	923	False	NA	NA	False	NA	NA	NA	9959112	9963905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_9959100_9963900
80693	chr6	-	1630	11	NIC	ENSMUSG00000030056.9	novel	5837	11	NA	NA	11	3061	combination_of_known_junctions	FALSE	canonical	1	3	junction_7	88.6157999456079	874	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTGCCTAGAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	87815709	87795428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810709_87811409_87811476_87811924_87811977_87812709_87812733_87815625
80694	chr18	-	2794	10	NNC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	10	-998	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	29.3749704491577	259	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATATCCTGTTTCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	35836164	35805153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35805738_35805818_35806133_35807395_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35836078
80695	chr4	+	1909	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	15	-405	15	405	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	3323	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAGACTTCATCCTTTTC	15	False	NA	NA	False	NA	NA	NA	40948421	40965708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
80696	chr2	+	6457	11	FSM	ENSMUSG00000026842.17	ENSMUST00000075759.13	6327	11	-135	5	40	-5	multi-exon	FALSE	canonical	3	69	junction_1	36.9031163995671	157	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAGACTGCTTGGTCTGT	5619	False	NA	NA	False	NA	NA	NA	31578427	31693548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31579955_31668345_31668520_31668932_31669229_31674518_31674792_31680282_31680368_31680673_31680852_31682249_31682435_31684553_31684707_31686984_31687075_31687574_31687740_31690217
80697	chr7	+	3463	20	NIC	ENSMUSG00000039361.12	novel	3528	21	NA	NA	16	-25	combination_of_known_junctions	FALSE	canonical	3	16	junction_12	45.9396207370349	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATGTAAAATTTGTT	NA	False	NA	NA	False	NA	NA	NA	89779739	89858283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89831426_89831577_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
80698	chr2	-	4889	22	NIC	ENSMUSG00000036281.14	novel	4368	23	NA	NA	0	-4	intron_retention	FALSE	canonical	3	13	junction_10	15.914881297453	58	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACTTAAAAAGCAATGTAT	NA	False	NA	NA	False	NA	NA	NA	26270647	26252791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_26253033_26253649_26253805_26254631_26256050_26256420_26256449_26257202_26257314_26257746_26257818_26258155_26258421_26259150_26259625_26259923_26260004_26260797_26260893_26262770_26262838_26262985_26263093_26263330_26264198_26264503_26264577_26264654_26264760_26265619_26265702_26266166_26266246_26266611_26266738_26266880_26267049_26268032_26268080_26268505_26268649_26270560
80699	chr2	-	5370	26	FSM	ENSMUSG00000038844.11	ENSMUST00000043589.8	6383	26	119	894	32	343	multi-exon	FALSE	canonical	3	64	junction_14	9.18050107564941	86	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAACGGACTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	142743332	142460287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_142461837_142490347_142490432_142514208_142514299_142532498_142532622_142544542_142544594_142545861_142545959_142549178_142549332_142553614_142554959_142556598_142556653_142581442_142581532_142582828_142582912_142598008_142598147_142599816_142599869_142600709_142600830_142675996_142676057_142679436_142679503_142688848_142689025_142689910_142690043_142690212_142690382_142691783_142691927_142695546_142695657_142696353_142696452_142699230_142699348_142704346_142704461_142707263_142707334_142743244
80700	chr5	+	1909	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	-104	1	intron_retention	FALSE	canonical	3	76	junction_1	168.151122505917	15	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGTTTCATACAGACGTG	NA	False	NA	NA	False	NA	NA	NA	100187739	100216620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_100188133_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
80702	chr6	+	5747	11	NNC	ENSMUSG00000029775.15	novel	5901	10	NA	NA	40	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	66.336189218254	122	20	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGTCCAAGTTGCCAT	19	True	NA	NA	False	NA	NA	NA	30401934	30455171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_30402000_30402106_30402150_30427707_30427795_30439642_30439865_30441775_30441931_30444425_30444575_30446616_30446702_30447409_30447477_30447939_30447988_30449489_30449630_30450485
80703	chr10	-	2282	12	NNC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	78.2607424041767	370	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	367	False	NA	NA	False	NA	NA	NA	41685626	41594836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41614244_41614322_41616835_41616958_41619037_41619218_41621766_41621918_41685568
80704	chr11	-	3091	20	ISM	ENSMUSG00000017210.15	ENSMUST00000125064.8	4577	24	11924	8	1900	-8	3prime_fragment	FALSE	canonical	3	102	junction_19	26.5968152551664	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGTGTTGCTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	98607736	98595424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239
80705	chrX	+	4637	10	Antisense	novelGene_ENSMUSG00000031119.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCGGCTCGCACAGCGAG	NA	False	NA	NA	False	NA	NA	NA	51139889	51254201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_51141663_51141756_51142602_51142691_51142868_51143320_51143455_51145531_51145682_51145775_51145909_51151734_51151899_51163168_51163563_51180518_51180676_51253490
80706	chr5	-	3469	4	Antisense	novelGene_ENSMUSG00000040557.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	33	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGGCGTGTCTGAGAGC	NA	False	NA	NA	False	NA	NA	NA	134971320	134961225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_134962454_134963140_134963275_134964628_134964722_134969306
80707	chrX	+	3171	13	FSM	ENSMUSG00000019558.15	ENSMUST00000114465.9	3314	13	143	0	9	0	multi-exon	FALSE	canonical	3	360	junction_3	45.3026857187665	26	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTCCTGTTTCTGCTTC	NA	False	NA	NA	False	NA	NA	NA	72717533	72726108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72717657_72719243_72719376_72720255_72720506_72720926_72721060_72722241_72722377_72722471_72722576_72722669_72722795_72723290_72723404_72723524_72723663_72723737_72723841_72723937_72724039_72724110_72724282_72724565
80708	chr2	+	5398	2	FSM	ENSMUSG00000039463.15	ENSMUST00000150326.2	2059	2	4	-3343	-3	3343	multi-exon	FALSE	canonical	3	99	junction_1	0	59	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAATCGTCGTCACTTC	NA	False	NA	NA	False	NA	NA	NA	167263646	167271397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_167263686_167266038
80709	chr14	-	1740	8	Antisense	novelGene_ENSMUSG00000021748.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	29	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGCCGAATGACAACACAG	NA	False	NA	NA	False	NA	NA	NA	14303846	14296820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_14296880_14296952_14297007_14298240_14298355_14298443_14298538_14299324_14299610_14299950_14300063_14300334_14300427_14302916
80710	chr11	+	5190	3	Antisense	novelGene_ENSMUSG00000020303.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	100	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAGCTCTGGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	31307931	31320108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_31310533_31315339_31315545_31317724
80711	chrX	+	11828	40	NNC	ENSMUSG00000086629.9	novel	1433	4	NA	NA	-97048	-5202	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	140	35	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATATTCTAGCCCAAGAGC	NA	False	NA	NA	False	NA	NA	NA	107780357	107877906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_107787377_107792888_107793048_107793836_107793935_107794294_107794459_107796423_107796576_107797844_107797916_107799019_107799162_107799950_107800008_107801124_107801204_107801288_107801415_107802453_107802576_107803211_107803368_107803476_107803539_107803904_107804015_107804839_107804922_107805675_107805803_107808734_107808844_107811554_107811669_107812491_107812658_107813344_107813421_107815125_107815279_107816917_107817010_107818431_107818617_107821852_107822018_107823496_107823732_107827721_107827847_107829252_107829390_107833340_107833492_107834749_107834850_107837902_107837948_107840350_107840456_107841637_107841706_107842360_107842462_107847587_107847809_107849041_107849204_107868411_107868511_107868950_107869100_107876817_107876883_107877495_107877573_107877704
80712	chr17	+	2823	19	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	306.628540303076	12	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGTATGAGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	6320744	6358582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6320866_6330872_6330977_6335503_6335596_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643_6356685_6358351
80713	chr2	+	1892	4	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	24906	1	4440	-1	3prime_fragment	FALSE	canonical	3	2909	junction_2	170.282771360529	8	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGACTCCTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	162921512	162926607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162921628_162922637_162922743_162924469_162924620_162925085
80714	chr14	-	1786	8	Fusion	ENSMUSG00000096488.2_ENSMUSG00000095195.8	novel	1955	7	NA	NA	18	0	multi-exon	TRUE	non_canonical	0	0	junction_1	1.8070158058105	4	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	NA	NA	NA	19057141	18875552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_18876509_18880194_18880378_18881053_18881186_18882135_18882299_18892819_18892971_18896174_18896289_18897665_18897713_19057101
80715	chr18	+	1806	10	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1758.38718892423	344	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGTCTTGGTTGATGA	NA	False	NA	NA	False	NA	NA	NA	77861699	77870566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866291_77867556_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
80716	chr11	-	2153	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	-15	-346	-15	346	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	2080	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGCATGGTGGCACATA	NA	False	NA	NA	False	NA	NA	NA	51891326	51875977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
80717	chrX	-	3894	26	Intergenic	novelGene_4070	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	78	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCGCGCGGGTTCCA	NA	False	NA	NA	False	NA	NA	NA	143157446	143101043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101116_143102996_143103054_143105003_143105124_143119126_143119458_143120085_143120172_143121959_143121998_143122715_143122767_143123720_143123804_143125638_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133525_143134258_143134372_143134763_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139953_143146852_143147102_143150892_143150933_143152553_143152614_143152655_143152857_143156542
80719	chr19	-	3005	13	NNC	ENSMUSG00000025200.8	novel	3581	14	NA	NA	48	0	intron_retention	FALSE	canonical	0	0	junction_1	45.1525193095579	3	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAAGGCTGACAGATGTC	NA	False	NA	NA	False	NA	NA	NA	44124233	44098469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44099100_44101383_44101486_44102112_44102233_44102962_44103173_44109311_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
80720	chr19	-	3204	8	NIC	ENSMUSG00000025200.8	novel	3581	14	NA	NA	4238	-80	intron_retention	FALSE	canonical	3	148	junction_6	9.70587871512173	6	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCCTTGCCCTCAACCC	NA	False	NA	NA	False	NA	NA	NA	44117699	44098549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44099100_44101387_44101486_44102112_44103173_44109311_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636
80721	chr19	-	3307	14	NIC	ENSMUSG00000025200.8	novel	4068	15	NA	NA	4	-45	combination_of_known_splicesites	FALSE	canonical	1	1	junction_13	43.5413154813466	2	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATGCCCCCCCAAATCTT	NA	False	NA	NA	False	NA	NA	NA	44124060	44098514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44122784
80722	chr4	+	3661	2	FSM	ENSMUSG00000006392.17	ENSMUST00000125235.2	538	2	-533	-2590	-533	2	multi-exon	FALSE	canonical	3	688	junction_1	0	8	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCATTCCTTGTCCTATA	NA	False	NA	NA	False	NA	NA	NA	118268100	118272310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_118269000_118269548
80723	chr12	+	2145	11	NNC	ENSMUSG00000060073.10	novel	2846	11	NA	NA	4024	-284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1204.30011209831	18	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAAAAAGAAAGTTGGAT	8842	False	NA	NA	False	NA	NA	NA	71025516	71042837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124_71041173_71041432
80724	chr11	-	1316	3	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	986	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGATTGTGTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	120471220	120468936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469774_120469929_120470237_120471048
80725	chr1	+	2728	1	Genic_Genomic	ENSMUSG00000026319.14	novel	NA	NA	NA	NA	-3288	1154	mono-exon	FALSE	NA	NA	NA	NA	NA	9	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTTGAACCCAAAGCTA	754	False	NA	NA	False	NA	NA	NA	105664648	105667376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_105664600_105667400
80726	chr11	-	3278	5	NNC	ENSMUSG00000038615.18	novel	3530	4	NA	NA	-16	1744	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	663.787051696551	14	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGTTAACACAGATCTTG	NA	False	NA	NA	False	NA	NA	NA	96714969	96706495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96708209_96710220_96711343_96712076_96712236_96712929_96713146_96714901
80727	chr8	-	3492	16	NIC	ENSMUSG00000031660.14	novel	3625	17	NA	NA	45	-245	intron_retention	FALSE	canonical	3	463	junction_11	32.0534276204936	381	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATTTCCCTGTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	89088597	89057931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
80728	chr10	-	1986	6	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	199	-36	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	380.637675486807	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATTTTGTTTAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	5755401	5749195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5754537_5754819_5755258
80730	chr7	-	2605	12	NIC	ENSMUSG00000030824.18	novel	4853	13	NA	NA	-2	181	intron_retention	FALSE	canonical	3	464	junction_6	39.1671560839242	481	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGTTTACTATC	NA	False	NA	NA	False	NA	NA	NA	45159811	45142350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
80731	chr9	-	5975	21	NNC	ENSMUSG00000032064.18	novel	5719	20	NA	NA	-305	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_20	11.0186206033242	44	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATCCACTTCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	50639672	50574056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50577576_50578959_50579069_50580749_50580856_50592786_50592854_50593332_50593501_50593836_50593927_50595024_50595097_50595173_50595267_50595653_50595708_50596127_50596233_50598660_50598712_50599902_50599957_50601159_50601250_50604842_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085_50639607_50639654
80732	chr7	-	1132	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	-5	intron_retention	FALSE	canonical	3	11064	junction_6	2341.53010277942	5	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778159	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776699_44776919_44776993_44778123
80733	chr3	+	2980	1	FSM	ENSMUSG00000104546.2	ENSMUST00000199418.2	1778	1	-356	-846	-356	846	mono-exon	FALSE	NA	NA	NA	NA	NA	164	79	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTAATCTCATTTATGA	NA	False	NA	NA	False	NA	NA	NA	152091540	152094520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_152091500_152094500
80734	chr4	-	4346	16	Genic_Genomic	ENSMUSG00000088982.3	novel	106	1	NA	NA	-15780	31070	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	16	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGCTGCCACTCCGCCC	NA	False	NA	NA	False	NA	NA	NA	127018144	126971188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_126971393_126972199_126972340_126972487_126972654_126980765_126980831_126982117_126982348_126986704_126986877_126994402_126994552_126995639_126995756_126997202_126997479_126998061_126998213_126999064_126999238_127000366_127000515_127002338_127002507_127003715_127003756_127014220_127014364_127016139
80735	chr4	+	1460	4	Intergenic	novelGene_2061	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	4	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCGGTTGTCCTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	146317971	146331788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146318083_146327964_146328160_146328573_146328729_146330789
80736	chr17	+	4882	22	ISM	ENSMUSG00000032624.17	ENSMUST00000234460.2	5286	24	59113	0	-46195	0	3prime_fragment	FALSE	canonical	3	110	junction_2	110.004040329839	176	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTCCTTTGCCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	83717534	83787790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_83717638_83729034_83729165_83734651_83734781_83735428_83735455_83735644_83735678_83747459_83747584_83748724_83748875_83752057_83752128_83753374_83753486_83755588_83755685_83758074_83758210_83758367_83758504_83761829_83761982_83763460_83763587_83763670_83763803_83764423_83764492_83768957_83769047_83770926_83771025_83780474_83780563_83781078_83781178_83784632_83784764_83785134
80737	chr16	-	2600	9	FSM	ENSMUSG00000044626.14	ENSMUST00000074230.12	2051	9	-57	-492	5	492	multi-exon	FALSE	canonical	3	14	junction_5	59.399994739057	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAATGTTAATATTTAG	NA	False	NA	NA	False	NA	NA	NA	21814258	21773644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21794982_21795085_21800085_21800195_21802650_21803019_21814070
80738	chr3	-	1196	4	FSM	ENSMUSG00000037152.12	ENSMUST00000038108.12	1249	4	50	3	26	-3	multi-exon	FALSE	canonical	3	5471	junction_1	421.328322755017	14970	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGACAGGGTGGAACCT	NA	False	NA	NA	False	NA	NA	NA	51316359	51312100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_51313041_51314756_51314834_51315565_51315670_51316284
80739	chr16	-	1670	14	NNC	ENSMUSG00000058240.15	novel	1965	13	NA	NA	3	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	578.129262178436	657	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATTCATTCACTCTGA	9209	False	NA	NA	False	NA	NA	NA	91525482	91486219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91486804_91487591_91487638_91489486_91489593_91491069_91491189_91492148_91492248_91496064_91496177_91497959_91498094_91504112_91504182_91505716_91505762_91509082_91509158_91509240_91509335_91511636_91511715_91514291_91514364_91525445
80740	chr17	-	2205	7	ISM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	2527	1490	2527	-1490	3prime_fragment	FALSE	canonical	3	572	junction_5	31.4536696322279	109	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAAGTGGATGGTGTATA	NA	False	NA	NA	False	NA	NA	NA	56594984	56585965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793
80741	chrX	+	4159	29	NNC	ENSMUSG00000025862.15	novel	294	3	NA	NA	34	-1004	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	54.4222906012391	2	63	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGGTGCTGATTTTATA	NA	False	NA	NA	False	NA	NA	NA	41239924	41365048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_41239966_41290731_41290872_41294922_41295002_41299954_41300120_41306211_41306309_41309854_41309932_41312122_41312187_41322747_41322856_41323522_41323635_41325165_41325284_41325827_41325932_41335842_41335936_41336055_41336146_41336726_41336931_41338881_41338953_41339208_41339297_41339397_41339479_41341930_41342024_41342553_41342729_41345731_41345872_41346902_41347005_41348231_41348381_41349480_41349610_41351535_41351760_41354962_41355153_41355242_41355354_41358257_41358385_41360121_41360200_41364139
80742	chr19	-	4862	25	FSM	ENSMUSG00000051984.14	ENSMUST00000111985.2	3548	25	-19	-1295	-2	1045	multi-exon	TRUE	canonical	2	5	junction_17	4.98051759916131	22	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGTCTCCTCTGCATCCT	NA	False	NA	NA	False	NA	NA	NA	44534305	44504350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44505928_44506078_44506151_44506582_44506700_44506956_44507104_44507339_44507399_44507611_44507927_44508861_44509022_44511443_44511606_44512098_44512273_44512867_44513014_44513559_44513687_44513914_44514094_44514654_44514755_44515043_44515143_44515436_44515512_44517104_44517336_44520119_44520210_44520732_44520895_44521032_44521133_44522679_44522823_44523126_44523271_44524143_44524240_44524496_44524693_44532139_44532252_44534226
80743	chr2	-	1778	10	NNC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	-10	140	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_6	175.514974212571	8	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGCCAAAATGATTCTG	NA	False	NA	NA	False	NA	NA	NA	34760955	34742314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753548_34755538_34755668_34755993_34756108_34756904_34757050_34760761
80744	chr16	+	4219	19	NNC	ENSMUSG00000022842.19	novel	3152	19	NA	NA	158	-6	intron_retention	FALSE	non_canonical	0	0	junction_9	12.5604710142082	33	62	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTGATGACTCCAGCTAT	NA	False	NA	NA	False	NA	NA	NA	20448758	20465220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20452968_20453041_20456410_20456588_20457399_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090
80745	chr17	-	4046	15	NNC	ENSMUSG00000004865.17	novel	4804	15	NA	NA	0	-74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.595813716816	10	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCTTTCTACTGAGTG	NA	False	NA	NA	False	NA	NA	NA	28841461	28806695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808340_28808410_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
80746	chr3	+	3045	9	NIC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	54	junction_7	8.95038406997152	3	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGAAGTTGGTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	103716905	103729333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103728276_103728651
80747	chr5	+	3219	19	FSM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	61	0	61	0	multi-exon	FALSE	canonical	3	142	junction_1	18.3673926051335	362	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTGAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	137015933	137025502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
80748	chrX	+	4247	4	ISM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	24764	-1	24764	1	3prime_fragment	FALSE	canonical	3	2200	junction_1	55.2589861973196	8	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52101777	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_52105307_52108981_52109029_52109199_52109277_52109943
80749	chrX	-	2777	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-3	-10	intron_retention	FALSE	canonical	0	0	junction_7	434.75488496393	1	137	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921355	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912491_158913104_158913232_158915064_158915239_158916168_158916229_158921251
80750	chr4	-	1251	8	Antisense	novelGene_ENSMUSG00000028689.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGCTATCACCACTGAGAC	NA	False	NA	NA	False	NA	NA	NA	116570169	116565934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_116566290_116566434_116566467_116566629_116566815_116566918_116567001_116567295_116567482_116568482_116568576_116569568_116569630_116569912
80751	chr14	+	4059	2	NNC	ENSMUSG00000021770.12	novel	6801	6	NA	NA	1893	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	65	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATGTGGCTTGTTATAA	5401	False	NA	NA	False	NA	NA	NA	21843832	21848789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21846826_21847723
80752	chr19	-	6075	16	NNC	ENSMUSG00000025195.10	novel	6100	16	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	25.2313737680338	85	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	43928625	43835259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857454_43858600_43858749_43862596_43862697_43863265_43863460_43889508_43891498_43899163_43899287_43900673_43900829_43928555
80753	chr5	-	2080	2	NNC	ENSMUSG00000029524.17	novel	733	2	NA	NA	-500	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	0	9	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGCATAACAAATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	115618497	115616077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115617133_115617472
80754	chr7	+	4697	3	NIC	ENSMUSG00000030649.19	novel	2797	5	NA	NA	-31	-4	intron_retention	FALSE	canonical	3	587	junction_2	9.5	73	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGAATAACTTGGTCCA	7786	False	NA	NA	False	NA	NA	NA	101545583	101551048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101547279_101547760_101547821_101548106
80755	chr11	+	3479	11	FSM	ENSMUSG00000000056.8	ENSMUST00000103015.4	4395	11	-52	968	-52	-968	multi-exon	FALSE	canonical	3	80	junction_4	11.0295058819514	161	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATCTCTGTGAATTAGA	NA	False	NA	NA	False	NA	NA	NA	121128026	121145714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_121128178_121129244_121129344_121133326_121133471_121135419_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118_121141257_121141585_121141744_121143506
80756	chr8	-	5002	4	ISM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	689	2116	689	-2116	intron_retention	FALSE	canonical	3	751	junction_2	26.106618998935	10	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAGAATTTGCTATTGAA	NA	False	NA	NA	False	NA	NA	NA	66938460	66929097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114
80757	chrX	+	2030	8	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	757	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1330.28944218918	1	80	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGAAGCCTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	100474097	100492179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487914_100491199
80758	chr15	-	4107	14	NIC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-57	-892	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	8.88386610227084	151	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATCCCTAAAGTCAACAGA	2672	False	NA	NA	False	NA	NA	NA	58953911	58813974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_58815980_58817210_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
80759	chr8	-	5877	13	NIC	ENSMUSG00000037415.8	novel	5308	14	NA	NA	8	-27	intron_retention	FALSE	canonical	3	41	junction_3	9.13289232511926	3	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATTAAAATACACATCCA	NA	False	NA	NA	False	NA	NA	NA	106553829	106494966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669_106500746_106500918_106501068_106501166_106501276_106502591_106502705_106506458_106506644_106508911_106508935_106513258_106513427_106532163_106532217_106552709_106552822_106553581
80760	chr11	-	2865	17	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	25	1853	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	223.480904875003	3	79	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTATGTTTCATAATT	NA	False	NA	NA	False	NA	NA	NA	95896741	95852408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95853343_95854365_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859306_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284_95896510_95896551
80761	chr11	-	8719	22	ISM	ENSMUSG00000034297.15	ENSMUST00000043624.9	10546	30	38029	9	12610	-9	3prime_fragment	TRUE	canonical	3	33	junction_16	14.3888341693424	127	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCCTTCCTTGTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	86210399	86157867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_86161945_86163288_86163390_86166199_86166374_86167645_86167795_86169295_86169482_86169589_86169749_86170418_86170562_86174025_86174250_86174576_86174769_86175938_86176159_86177259_86177717_86178916_86179107_86179758_86179983_86181868_86182031_86189105_86190023_86191475_86191673_86191955_86192171_86192290_86192382_86194359_86194482_86197809_86197889_86199524_86199739_86210173
80762	chr11	-	626	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	235	0	189	0	multi-exon	FALSE	canonical	3	9692	junction_2	172	37	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	70545235	70542675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
80763	chr11	+	5788	19	FSM	ENSMUSG00000018401.18	ENSMUST00000119628.8	4664	19	1	-1125	1	-5	multi-exon	FALSE	canonical	3	10	junction_1	32.1891113404656	116	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTTTGTTGGGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	87483723	87507123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87483853_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
80765	chr2	-	2395	10	FSM	ENSMUSG00000039660.17	ENSMUST00000142669.8	2424	10	11	18	11	0	multi-exon	FALSE	canonical	3	299	junction_5	42.1051007144365	59	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	NA	False	NA	NA	NA	30068430	30063482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604
80766	chr14	+	3025	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	90	-670	90	670	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	259	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAAAGTGAATGAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	103307741	103315734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
80767	chr16	-	1540	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	-327	15	-327	-7	multi-exon	FALSE	canonical	2	1237	junction_10	165.436271718145	3239	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCACCTATATAAAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	22946814	22932707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
80768	chr7	+	3257	8	NNC	ENSMUSG00000058638.15	novel	3591	8	NA	NA	8	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	139.788469934149	1	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAAACAGCCATTGTCG	NA	False	NA	NA	False	NA	NA	NA	12568971	12584482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12569208_12569373_12569455_12570219_12570347_12571015_12571112_12578502_12578833_12580722_12580824_12581898_12582026_12582323
80769	chr1	-	6355	27	FSM	ENSMUSG00000073678.5	ENSMUST00000097739.5	10583	27	-17	4245	-15	-4245	multi-exon	TRUE	canonical	3	24	junction_18	5.36548800562088	80	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCCATATTGGCAAGCTT	NA	False	NA	NA	False	NA	NA	NA	54596858	54516397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_54520004_54521010_54521116_54525628_54525817_54529379_54529431_54531187_54531324_54532367_54532566_54533959_54534051_54536692_54536787_54549186_54549226_54550552_54550662_54551059_54551127_54551755_54551808_54551930_54552005_54553995_54554072_54560450_54560529_54563474_54563527_54564526_54564574_54567670_54567755_54569275_54569332_54570012_54570119_54571180_54571248_54572577_54572631_54575113_54575272_54582196_54582369_54587097_54587274_54590135_54590290_54596592
80770	chr7	-	4189	31	NNC	ENSMUSG00000030491.17	novel	3651	30	NA	NA	11	263	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	214.649960530058	8	89	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTCTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	35237159	35168259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35168618_35169090_35169158_35169241_35169396_35169477_35169592_35169681_35169746_35170616_35170727_35175357_35175526_35177474_35177572_35179565_35179777_35180441_35180542_35182464_35182565_35184629_35184851_35185024_35185165_35185844_35185963_35186578_35186708_35186956_35187133_35188061_35188190_35188623_35188781_35189354_35189541_35193254_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
80771	chrX	-	2840	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	-56	-645	-1	645	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	195	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGTATTAAATGATATTAT	NA	False	NA	NA	False	NA	NA	NA	56438397	56428244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
80772	chr14	-	3033	15	NNC	ENSMUSG00000022218.17	novel	2852	15	NA	NA	-94	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	57.854717762227	390	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCTGTTTAGTAGTCCTG	302	False	NA	NA	False	NA	NA	NA	55951045	55937489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950635
80773	chr2	+	4480	17	NIC	ENSMUSG00000000194.14	novel	6134	18	NA	NA	-7	1966	intron_retention	FALSE	canonical	1	139	junction_13	90.6628369289203	7	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCTTGGACAACAAGAG	NA	False	NA	NA	False	NA	NA	NA	31042355	31106544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31075619_31078694_31078826_31081858_31081903_31097690_31097741_31099078_31099163_31100460_31100583_31104255
80775	chr5	+	2783	20	NNC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	-92	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	42.0605683834917	263	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTGAGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	137016139	137025502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_137016229_137016458_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
80776	chr6	+	4493	7	ISM	ENSMUSG00000052144.9	ENSMUST00000063854.7	4874	9	18864	2	1	-2	3prime_fragment	FALSE	canonical	3	518	junction_5	43.6564873631502	325	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACGTGTGGAATTACT	NA	False	NA	NA	False	NA	NA	NA	100829446	100846893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842034_100842179_100842748_100843045_100843217
80777	chr3	+	3748	1	Antisense	novelGene_ENSMUSG00000062006.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACCGTCCCCGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	130520222	130523970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_130520200_130524000
80778	chr8	-	2534	8	NNC	ENSMUSG00000031951.9	novel	2920	8	NA	NA	-7	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.1872539775341	7	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAAAGAACGTTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	112660438	112638652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112639667_112640031_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
80779	chr15	-	1351	8	ISM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	9507	16	296	-16	3prime_fragment	FALSE	canonical	3	5838	junction_6	322.899112316361	196	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTCCTTAAACAGTAGAT	9884	False	NA	NA	False	NA	NA	NA	36599710	36595920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448
80781	chr11	-	2388	11	FSM	ENSMUSG00000069631.15	ENSMUST00000103072.10	1517	11	5	-876	5	358	multi-exon	FALSE	canonical	3	87	junction_9	16.6340013225922	462	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCGGCTCCGTGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	106084383	106053797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
80782	chr4	+	2429	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	-73	-1511	-73	1511	multi-exon	FALSE	canonical	3	137	junction_1	26.5	1649	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACAAAAGTCACTGCCT	NA	False	NA	NA	False	NA	NA	NA	41465077	41482437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_41465181_41477513_41477648_41480245
80783	chr17	+	1893	7	NNC	ENSMUSG00000091705.9	novel	1262	7	NA	NA	458	70	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	2.68741924943285	141	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTCCATACACAACTCAG	5338	False	NA	NA	False	NA	NA	NA	35561675	35565808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35561846_35562105_35562365_35563730_35564007_35564133_35564251_35564429_35564463_35564635_35564685_35564819
80784	chr9	+	3812	9	FSM	ENSMUSG00000032086.13	ENSMUST00000034591.11	6058	9	0	2246	0	-66	multi-exon	FALSE	canonical	3	11	junction_1	5.43139024560011	26	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGCTTTATCATTTCT	7298	False	NA	NA	False	NA	NA	NA	45749877	45773451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_45750587_45764185_45764275_45765924_45766142_45767385_45767524_45768411_45768547_45769697_45769800_45770207_45770358_45770576_45770749_45771351
80785	chr4	-	2627	1	NIC	ENSMUSG00000086682.2	novel	2490	3	NA	NA	17	-6091	mono-exon	FALSE	NA	NA	NA	NA	NA	43	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAGGCACAAAGTAAAG	NA	False	NA	NA	False	NA	NA	NA	155709195	155706568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155706600_155709200
80787	chr4	+	3710	8	NNC	ENSMUSG00000028278.15	novel	5055	8	NA	NA	-143	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	46.2561634062016	119	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGAAGTGGGGTCTCT	15	False	NA	NA	False	NA	NA	NA	32983310	33022180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646_33019407_33020430
80788	chr6	-	1550	3	NNC	ENSMUSG00000030117.6	novel	2125	2	NA	NA	94	-848	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	8.5	349	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTTTGGCTTATGCTC	9941	False	NA	NA	False	NA	NA	NA	122586952	122583209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122584095_122584916_122585284_122586654
80789	chr17	-	2292	14	NNC	ENSMUSG00000059208.16	novel	2370	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	859.998672078237	1	71	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5767	False	NA	NA	False	NA	NA	NA	33904366	33865209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33865634_33867786_33867839_33868568_33869372_33877337_33877440_33877843_33877889_33879186_33879276_33882194_33882260_33884430_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33889046_33889108_33896247_33896415_33904240
80790	chr7	-	3371	8	FSM	ENSMUSG00000030871.12	ENSMUST00000147397.2	3222	8	14	-163	14	163	multi-exon	FALSE	canonical	3	137	junction_2	8.41281820819169	67	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCCAGTGCGTCATTAC	NA	False	NA	NA	False	NA	NA	NA	121666279	121637880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121647798_121654781_121654972_121662151_121662308_121666127
80791	chr1	-	1671	1	Intergenic	novelGene_397	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGGTGGTCAGTGATGT	8886	False	NA	NA	False	NA	NA	NA	84883019	84881348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_84881300_84883000
80792	chr1	+	6239	24	Antisense	novelGene_ENSMUSG00000100620.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	164	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCACCGAATGACGGCTCC	NA	False	NA	NA	False	NA	NA	NA	135310059	135358207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_135313215_135313955_135314059_135314421_135314543_135315110_135315246_135316247_135316416_135317050_135317321_135318271_135318409_135319240_135319383_135321874_135322094_135327772_135327942_135329970_135330114_135331028_135331137_135331964_135332061_135333558_135333710_135334253_135334314_135334498_135334597_135334688_135334809_135335724_135335806_135337121_135337220_135346974_135347176_135347727_135347818_135348031_135348092_135354668_135354782_135358006
80793	chr3	+	3518	24	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-795	31050	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	127	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCACGTGATATAAGATTC	NA	False	NA	NA	False	NA	NA	NA	89907626	89959802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908302_89909592_89909786_89910554_89910623_89915565_89915670_89916418_89916635_89917737_89917821_89919992_89920047_89922436_89922525_89922607_89922806_89924007_89924079_89924421_89924590_89925716_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932547_89933902_89933988_89935633_89935684_89941372_89941485_89941961_89941981_89952151_89952238_89955075_89955207_89959761
80794	chr14	-	2784	8	FSM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	-80	-1237	-80	1237	multi-exon	FALSE	canonical	3	468	junction_6	43.0538343595692	2284	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAACATCCAGTCGGAAG	NA	False	NA	NA	False	NA	NA	NA	76248385	76133139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
80795	chr18	+	5356	25	ISM	ENSMUSG00000034653.12	ENSMUST00000037763.11	7215	30	12438	32	-7696	-32	3prime_fragment	FALSE	canonical	3	32	junction_4	9.00453203793635	69	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAATTTTAAATATACTTA	NA	False	NA	NA	False	NA	NA	NA	44973250	45022752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_44973355_44974329_44974487_44977352_44977461_44978746_44978896_44980810_44980947_44983374_44983502_44983702_44983769_44987669_44987849_44988058_44988156_44988237_44988326_44988410_44988492_44990075_44990159_44991254_44991361_44992997_44993118_44993443_44993717_44995671_44995799_44997331_44997538_44997927_44998124_45004516_45004627_45005907_45006201_45010684_45010863_45018189_45018394_45019306_45019490_45020674_45020763_45020855
80796	chr4	+	4392	11	NIC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	-3	-10	intron_retention	FALSE	canonical	3	99	junction_1	26.6925083122587	4	95	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTCTGCCTGTGGCAG	NA	False	NA	NA	False	NA	NA	NA	115696426	115736437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732743_115733777
80798	chr1	-	5716	16	ISM	ENSMUSG00000026200.14	ENSMUST00000113623.8	2339	17	55	-2345	30	1234	intron_retention	FALSE	canonical	2	6	junction_6	4.27083130081252	80	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAATAAAGACCCTGCCT	5289	False	NA	NA	False	NA	NA	NA	75187367	75173645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_75176402_75176554_75176771_75176973_75177106_75177587_75177702_75177841_75177932_75178042_75178118_75178386_75178506_75178693_75178735_75178830_75178953_75179051_75179111_75179218_75179394_75179490_75179586_75184962_75185024_75185330_75185482_75185699_75185867_75186024
80799	chr11	-	3027	19	NNC	ENSMUSG00000020923.18	novel	3286	20	NA	NA	48	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	297.217279294309	1	83	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCGGCTGCCGTCTCTGT	9214	False	NA	NA	False	NA	NA	NA	102207453	102196817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199142_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102201024_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207260
80800	chr4	+	2665	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	133.436726578555	12	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147533648	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147591995_147592098_147595209_147595337_147596801_147598228_147599646
80801	chr4	+	4251	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000070605.5	novel	410	4	NA	NA	-2	-1901	multi-exon	TRUE	non_canonical	0	0	junction_2	24.7347933082126	77	30	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146033879	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034017_146094927_146095022_146096723_146096839_146209452_146209546_146250678_146250737_146251579_146251707_146253158_146253297_146253542_146254863_146304057_146305533_146392973_146393416_146552596
80803	chr4	+	2780	5	NIC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	1	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	39.4104998699585	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147637734	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665698_147665826_147667290
80804	chr5	+	4424	12	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-13	-17	intron_retention	FALSE	non_canonical	0	0	junction_5	756.922520790166	5	61	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650832	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45656420_45656600_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449
80805	chr2	-	3279	16	Antisense	novelGene_ENSMUSG00000038116.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	34	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACGCGCCCAGCGTATC	9207	False	NA	NA	False	NA	NA	NA	156145087	156038640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_156038716_156065252_156065373_156093698_156093868_156096145_156096235_156106204_156106281_156109073_156109461_156114459_156114575_156115600_156115790_156118406_156118587_156129718_156129925_156129969_156130000_156134385_156134484_156135332_156136194_156138566_156138667_156140438_156140636_156144700
80806	chr12	-	7092	36	ISM	ENSMUSG00000021027.18	ENSMUST00000085385.7	7901	41	34856	4	34456	-4	3prime_fragment	FALSE	canonical	1	23	junction_22	23.6623182744728	79	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTTCCTGTCCATGATC	NA	False	NA	NA	False	NA	NA	NA	55833096	55649687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_55651054_55658857_55658889_55659418_55659544_55687368_55687497_55689109_55689269_55705832_55705989_55712337_55712462_55720237_55720310_55723188_55724051_55730691_55730876_55731271_55731407_55736543_55736613_55740139_55740251_55741931_55742041_55744623_55744683_55745546_55745673_55749219_55749349_55754737_55754894_55755778_55755878_55756298_55756493_55759418_55759572_55763746_55763924_55764877_55765095_55766368_55766494_55769558_55769727_55784995_55785158_55786116_55786355_55788218_55788349_55793900_55794050_55804710_55804846_55809324_55809523_55817403_55817644_55822803_55823013_55824076_55824216_55829566_55829683_55832954
80807	chr18	-	3408	2	Intergenic	novelGene_4572	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	124	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGTTCTCTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	77130373	77126285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_77129040_77129719
80808	chr18	+	2890	1	NIC	ENSMUSG00000041915.10	novel	3385	8	NA	NA	14191	1360	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	13	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTCAGGAAAGGTGGTT	NA	False	NA	NA	False	NA	NA	NA	31909047	31911937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_31909000_31911900
80809	chr11	+	4948	10	NIC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	-4447	-2	intron_retention	FALSE	canonical	3	694	junction_6	94.4897930342443	7	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGCCCTCCATTATCCTCA	1607	False	NA	-18	True	NA	NA	NA	4123100	4132539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4129243_4129353_4129426_4130033
80810	chr9	-	6933	16	FSM	ENSMUSG00000034342.10	ENSMUST00000206720.2	11372	16	60	4379	0	1907	multi-exon	TRUE	canonical	1	3	junction_5	3.59382185918495	87	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGACTTTCCCATTAACCC	2974	False	NA	NA	False	NA	NA	NA	44145286	44058651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44063035_44064085_44064266_44065057_44065156_44065486_44065628_44067912_44068008_44069810_44070189_44070273_44070406_44074635_44074840_44075422_44075555_44076098_44076187_44077749_44077888_44078506_44078629_44080316_44080474_44084549_44084697_44112256_44112505_44144996
80811	chr10	-	2089	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	7	-197	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	599.043066099026	3	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAAAATGCTAACCTGCC	NA	False	NA	NA	False	NA	NA	NA	127358306	127353204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355253_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
80812	chr8	-	3358	15	Antisense	novelGene_ENSMUSG00000000738.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	76	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTAATACCTTCAAAGCTA	NA	False	NA	NA	False	NA	NA	NA	123824488	123793257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_123793299_123797103_123797172_123800480_123800728_123803584_123803730_123804556_123804660_123806150_123806277_123806705_123806869_123807373_123807549_123814065_123814189_123815680_123816971_123818370_123818488_123820327_123820484_123821209_123821378_123821894_123821974_123824131
80813	chr1	-	1237	2	ISM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	3518	196	2938	-196	3prime_fragment	FALSE	canonical	3	1138	junction_1	0	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCTTAGTGGAATTTC	NA	False	NA	NA	False	NA	NA	NA	182106851	182103532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_182104459_182106540
80814	chr15	+	1966	3	NIC	ENSMUSG00000022561.14	novel	1809	11	NA	NA	193	-7	intron_retention	FALSE	canonical	3	294	junction_2	3	1	92	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTGTACCTTGGGATCC	6202	False	NA	NA	False	NA	NA	NA	76216919	76219091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76218405_76218489_76218661_76218781
80815	chrX	-	4398	19	Antisense	novelGene_ENSMUSG00000031066.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	87	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCGACGCAACTGAAGATAG	NA	False	NA	NA	False	NA	NA	NA	20586757	20570184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20570356_20577984_20578096_20578266_20578398_20578562_20578681_20579073_20579220_20579349_20579416_20579535_20579630_20579981_20580159_20580250_20580409_20580742_20580968_20581088_20581174_20581264_20581362_20582983_20584512_20584592_20584662_20584915_20585028_20585301_20585452_20585535_20585654_20585831_20585919_20586002
80816	chr8	+	2194	11	NIC	ENSMUSG00000003033.16	novel	2084	12	NA	NA	0	-6	intron_retention	FALSE	canonical	3	513	junction_8	42.1550708693509	738	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGCTGCCTGTCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	72993939	73011223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007478_73009540_73009667_73009950_73010027_73010578
80817	chr13	+	1501	9	NNC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	9029	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	44.3508737230734	3	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	NA	False	NA	NA	NA	119608348	119622653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119608777_119610368_119610493_119611375_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
80818	chr2	+	2436	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	4	-782	4	782	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	3382	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTCTGGAGTAATAGCCT	NA	False	NA	NA	False	NA	NA	NA	151384406	151404394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
80819	chr19	+	1489	6	ISM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	16468	6	6317	-6	3prime_fragment	FALSE	canonical	3	1246	junction_1	43.2666153055679	46	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	2989	False	NA	NA	False	NA	NA	NA	8891938	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
80820	chr2	-	7904	5	Intergenic	novelGene_2698	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	79	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCGAGGCTCTGGAGCCC	3497	False	NA	NA	False	NA	NA	NA	121137172	121120198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_121120352_121121198_121121300_121129073_121129159_121129384_121129523_121129745
80821	chr15	+	4572	7	ISM	ENSMUSG00000046897.18	ENSMUST00000118729.8	4241	8	432	5	371	-1	3prime_fragment	FALSE	canonical	0	0	junction_4	57.2247032903332	175	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCATGTCCTCTTTGAGA	1338	False	NA	NA	False	NA	NA	NA	102112514	102124035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102113522_102113663_102113741_102116205_102116356_102116706_102116797_102117187_102117312_102117589_102117709_102121030
80822	chr12	-	2864	5	NNC	ENSMUSG00000096701.3	novel	697	3	NA	NA	-37649	642	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.0949654899029	214	11	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGGTCTGTGAGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	23455074	23411115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_23411941_23415678_23417432_23447833_23447895_23448096_23448224_23454976
80823	chr18	+	2781	15	ISM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	-9	56017	-5	-56017	5prime_fragment	FALSE	canonical	3	162	junction_13	14.7406144473599	30	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTTGGGGCTCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	75151846	75364018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060
80824	chr5	+	834	2	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCACATAATCTGAGAGG	3019	False	NA	NA	False	NA	NA	NA	117420717	117423806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117421529_117423783
80825	chr11	+	4944	17	ISM	ENSMUSG00000020817.17	ENSMUST00000076270.13	5408	18	29985	216	29788	-216	3prime_fragment	TRUE	canonical	3	115	junction_9	23.5607592195158	103	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGCTGCTGAGTAGAGT	1133	False	NA	NA	False	NA	NA	NA	70765588	70833715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_70765701_70775590_70775795_70777836_70777998_70784394_70784515_70791297_70791434_70795430_70795610_70799211_70799344_70808140_70808609_70810002_70810108_70811677_70811795_70813968_70814068_70816597_70816739_70825230_70825421_70825952_70826009_70828349_70828449_70830705_70830823_70831207
80826	chr19	+	2952	5	NIC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	-325	-15	intron_retention	FALSE	canonical	3	703	junction_2	63.0768380627945	509	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAACTTCTCTGAATTT	1467	False	NA	NA	False	NA	NA	NA	5416443	5421539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5417239_5418085_5418305_5418449_5418754_5418922_5418971_5419953
80827	chr14	+	6152	19	FSM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-7	-1	2	1	multi-exon	FALSE	canonical	3	74	junction_1	25.8044043517888	127	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTGTAGATTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	75521818	75581867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
80828	chr12	-	1742	11	NNC	ENSMUSG00000005656.10	novel	1928	14	NA	NA	11366	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	503.672800536221	1	85	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATGGCTCTGGAATTC	NA	False	NA	NA	False	NA	NA	NA	54830901	54793189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801192_54807183_54807260_54810408_54810511_54812368_54812465_54814810_54814928_54817503_54817626_54830187_54830297_54830799
80829	chr5	+	1845	5	ISM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	11639	2346	11530	-2346	3prime_fragment	FALSE	canonical	3	190	junction_1	14.3592304807744	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	4649	False	NA	NA	False	NA	NA	NA	122999749	123007008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
80830	chr7	+	2869	12	NNC	ENSMUSG00000030727.13	novel	2234	13	NA	NA	-333	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	55.1880331980083	343	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTCAGTTGCCTTGTGCC	NA	False	NA	NA	False	NA	NA	NA	126027597	126045070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043490_126043694_126043751_126043991_126044109_126044468
80831	chr11	+	4746	28	ISM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	1264	0	-237	0	3prime_fragment	TRUE	canonical	3	43	junction_7	16.674895088134	127	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGCCTCCGCCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	69793980	69804646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69794279_69794479_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798839_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754_69802921_69803952
80832	chr4	+	2967	25	Intergenic	novelGene_1830	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTACAAAGCGGCGGC	4785	False	NA	NA	False	NA	NA	NA	41195987	41275099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41196042_41196325_41196532_41196727_41196808_41199216_41199266_41199493_41199580_41199715_41199907_41201463_41201534_41202273_41202440_41203532_41203573_41205523_41205740_41206154_41206332_41206837_41207103_41209350_41209570_41211704_41211889_41216562_41216636_41218312_41218362_41221553_41221624_41223358_41223459_41226278_41226334_41227197_41227277_41229694_41229849_41233603_41233718_41235521_41235590_41251529_41251672_41275039
80833	chr12	+	5980	21	FSM	ENSMUSG00000021244.16	ENSMUST00000021670.15	7003	21	976	47	838	-24	multi-exon	FALSE	canonical	3	62	junction_4	25.0129466476863	80	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACTTTCACTATAAAG	NA	False	NA	NA	False	NA	NA	NA	85044101	85117242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_85044131_85059662_85059900_85060677_85060897_85061423_85062368_85075543_85077662_85080690_85080809_85087346_85087768_85088596_85088690_85088895_85089086_85089715_85089835_85091143_85091299_85095582_85095646_85095906_85096027_85096465_85096643_85096717_85096802_85097062_85097147_85103995_85104077_85107036_85107089_85111744_85111876_85116392_85116574_85116878
80834	chr8	+	2492	18	NNC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-4	-10	intron_retention	FALSE	canonical	1	2	junction_4	89.6361734938296	12	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCTGTCTTCCCACCA	4580	False	NA	NA	False	NA	NA	NA	3681147	3692778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683794_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897
80835	chrX	+	1783	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	-41	-2	21	2	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	2714	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGATTGTGAGTCTCCCA	NA	False	NA	NA	False	NA	NA	NA	154045459	154080644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
80837	chr7	-	3369	3	Antisense	novelGene_ENSMUSG00000054715.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCTTCGTGCCCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	12642920	12631746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_12631871_12637527_12638011_12640158
80839	chr14	+	1938	6	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-61633	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.97423830966508	22	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAATATAAAAGCTGGTAG	NA	False	NA	NA	False	NA	NA	NA	40939128	41010774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_40939274_40999331_40999591_41000807_41000918_41001646_41001810_41002809_41002942_41009645
80840	chr8	+	1516	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	60	4	-8	-4	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	6316	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATTGCTTTAATTG	NA	False	NA	NA	False	NA	NA	NA	95584137	95590866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
80842	chr17	-	4453	21	NIC	ENSMUSG00000002496.11	novel	5432	40	NA	NA	-1021	-3	intron_retention	FALSE	canonical	3	88	junction_12	49.644209128558	5	92	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGACAGCAGTCAGACAG	NA	False	NA	NA	False	NA	NA	NA	24834576	24815465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24815741_24815828_24815928_24816019_24817345_24817998_24818086_24818253_24818330_24818530_24819022_24819308_24819440_24821067_24821272_24822059_24822273_24823279_24823393_24823479_24823633_24823801_24823964_24826410_24826506_24826672_24826776_24827068_24827163_24827917_24828108_24829410_24829546_24832164_24832288_24833325_24833477_24833657_24833765_24834450
80843	chr11	+	1725	3	FSM	ENSMUSG00000035530.14	ENSMUST00000139846.2	447	3	-532	-746	101	-1	multi-exon	FALSE	canonical	3	12221	junction_1	273.5	955	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGATGTCCAGATTGCA	4058	False	NA	NA	False	NA	NA	NA	100210811	100212921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100211656_100211773_100211876_100212142
80844	chr15	+	3931	23	FSM	ENSMUSG00000015002.19	ENSMUST00000211878.2	2541	23	-42	-1348	-42	-1210	multi-exon	FALSE	canonical	3	24	junction_1	115.997230303213	2	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGACCAGGCATGCCCAA	NA	False	NA	NA	False	NA	NA	NA	65682040	65744455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_65682174_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
80845	chr14	-	3706	3	ISM	ENSMUSG00000021891.9	ENSMUST00000228181.2	793	5	146	-982	146	784	intron_retention	FALSE	canonical	3	35	junction_1	122.5	1	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACACTAACCGGGTGAATG	NA	False	NA	NA	False	NA	NA	NA	31216803	31200757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_31201768_31209527_31209699_31214278
80846	chr13	+	2807	1	ISM	ENSMUSG00000021488.9	ENSMUST00000224973.2	9905	21	102872	295	21686	-295	mono-exon	FALSE	NA	NA	NA	NA	NA	8	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGGAATTGAGACCCT	NA	False	NA	NA	False	NA	NA	NA	55460466	55463273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55460500_55463300
80847	chr8	+	3623	2	FSM	ENSMUSG00000046441.6	ENSMUST00000056972.6	3545	2	-76	-2	-76	2	multi-exon	TRUE	canonical	3	60	junction_1	0	113	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTTTGTTTCATT	3564	False	NA	NA	False	NA	NA	NA	110944544	110951120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_110944719_110947671
80848	chr9	-	6316	23	NIC	ENSMUSG00000036777.9	novel	4605	24	NA	NA	-1	-8	intron_retention	FALSE	canonical	3	398	junction_4	55.7037062731196	9	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCAAAAGCATCAGTTATT	7182	False	NA	NA	False	NA	NA	NA	22300485	22243315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
80849	chr7	-	1780	12	FSM	ENSMUSG00000001794.14	ENSMUST00000001845.13	1600	12	-2	-178	-2	172	multi-exon	FALSE	canonical	3	37	junction_11	486.143841584714	1640	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACACTTTCTCACACACAC	8307	False	NA	NA	False	NA	NA	NA	29898238	29886188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430_29894590_29898182
80850	chr4	+	5806	22	FSM	ENSMUSG00000012123.18	ENSMUST00000227683.2	5578	22	-230	2	-230	1	multi-exon	FALSE	canonical	1	2	junction_1	46.1690672034849	121	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGCTGGTGGTCTCGTCT	NA	False	NA	NA	False	NA	NA	NA	133787895	133819813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_133788242_133790613_133790684_133792549_133793266_133799740_133802247_133802621_133802670_133802751_133802865_133803009_133803140_133806148_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
80851	chr5	+	2433	8	NIC	ENSMUSG00000029310.14	novel	995	6	NA	NA	-715	-25	intron_retention	FALSE	canonical	3	64	junction_1	99.0728447730687	437	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAACCCAATTGCT	NA	False	NA	NA	False	NA	NA	NA	104193456	104213220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_104194705_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
80852	chr12	-	4661	21	NNC	ENSMUSG00000035021.14	novel	5788	27	NA	NA	6372	-6	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_20	9.86711710683521	52	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTCTGAATTCT	1907	False	NA	NA	False	NA	NA	NA	54984465	54940341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_54941287_54941742_54941831_54942814_54942958_54945122_54945584_54946784_54947012_54947095_54947344_54955783_54955933_54958094_54958247_54959361_54959526_54963252_54963853_54965222_54965348_54967822_54967931_54969227_54969394_54969824_54970050_54970169_54970266_54974348_54974496_54976311_54976451_54977036_54977133_54981524_54981692_54982266_54982367_54984350
80853	chr2	-	3348	9	NNC	ENSMUSG00000002109.15	novel	2228	9	NA	NA	1	-7	intron_retention	FALSE	canonical	0	0	junction_8	32.6486982895184	7	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAAAGCCCAACAGGGTT	3020	False	NA	NA	False	NA	NA	NA	91067304	91041923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065664_91066379
80854	chr5	-	2662	1	ISM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	69833	0	12658	0	mono-exon	FALSE	NA	NA	NA	NA	NA	106	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACTGTGTGGTCTCAAGC	NA	False	NA	NA	False	NA	NA	NA	148266881	148264219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_148264200_148266900
80855	chr16	+	4552	8	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-108	452	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1415.81480110232	2	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTATGCTTTTTTACTT	NA	False	NA	NA	False	NA	NA	NA	84571165	84623268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84618138_84618191_84619674
80856	chr7	+	5836	6	Antisense	novelGene_ENSMUSG00000092574.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	62	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTCCCGCCCAGCGTCC	NA	False	NA	NA	False	NA	NA	NA	7914968	8096020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_7915402_7981811_7981827_8086265_8091227_8091986_8092113_8093258_8093301_8095761
80857	chr11	+	4077	10	Antisense	novelGene_ENSMUSG00000020474.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	101	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCCCGTAGGCGGGGCTTC	NA	False	NA	NA	False	NA	NA	NA	5777866	5787986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_5779116_5779310_5779395_5779476_5779724_5779824_5779928_5780066_5780203_5781661_5781785_5784744_5784813_5785414_5785584_5785695_5785796_5786188
80858	chr12	-	4664	10	Antisense	novelGene_ENSMUSG00000021144.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	35	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGAGCTGCTGCAATCCA	NA	False	NA	NA	False	NA	NA	NA	113100807	113091280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_113091841_113093739_113093813_113094151_113094220_113094508_113094621_113094982_113095086_113095190_113095381_113095505_113095596_113096802_113099447_113099898_113100051_113100135
80859	chr3	+	3216	11	Antisense	novelGene_ENSMUSG00000098737.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	61	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCATTGGAGGCCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	95641466	95648197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_95641784_95642134_95642225_95642511_95642734_95643158_95643534_95643783_95644095_95644311_95644370_95644944_95645026_95645119_95645201_95645323_95645429_95645550_95645614_95646684
80860	chr11	-	1393	13	ISM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	34832	6	34802	-6	3prime_fragment	FALSE	canonical	3	343	junction_6	92.8224110869783	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATGAGTGATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	54889439	54869939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360
80861	chr8	+	4650	9	NNC	ENSMUSG00000091490.4	novel	1552	9	NA	NA	-1053	2709	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	165.885832351651	2406	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGGATAACAGCCTCACC	NA	False	NA	NA	False	NA	NA	NA	43632524	43649627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_43632553_43633200_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
80862	chr1	-	3832	12	ISM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	42	6	42	-6	intron_retention	FALSE	canonical	3	571	junction_7	87.1971263458562	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAATGTTTTTTATACCT	NA	False	NA	NA	False	NA	NA	NA	121495676	121481569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609
80863	chr8	-	2587	12	ISM	ENSMUSG00000031537.16	ENSMUST00000146212.8	4845	20	81	9973	28	-2319	5prime_fragment	FALSE	canonical	3	74	junction_1	13.6078489747281	31	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCCCCCTAATTCCAA	NA	False	NA	NA	False	NA	NA	NA	23196513	23160345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
80864	chr2	+	4598	11	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	2205	0	intron_retention	FALSE	canonical	0	0	junction_9	913.238243833448	39	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162903473	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162922092_162922334_162922743_162924469
80865	chr10	-	1868	2	FSM	ENSMUSG00000070063.3_ENSMUSG00000061983.8	ENSMUST00000217883.2	864	2	5	-1009	5	2	multi-exon	FALSE	canonical	3	2594	junction_1	0	5	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663072	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_23662943_23663053
80866	chr6	-	2901	1	NIC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	16991	2724	mono-exon	FALSE	NA	NA	NA	NA	NA	6	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCTATCATGTAGCCGG	NA	False	NA	NA	False	NA	NA	NA	144961578	144958677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144958700_144961600
80867	chr6	+	2193	9	NNC	ENSMUSG00000004902.8	novel	1911	10	NA	NA	20743	28415	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4015	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGACCAAGGGGCCGTAGC	NA	False	NA	NA	False	NA	NA	NA	120771281	120799712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_120772728_120774839_120774926_120778003_120778098_120780267_120780340_120781005_120781093_120784545_120784614_120785322_120785432_120795293_120795361_120799548
80868	chr8	+	1496	1	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	1877	1274	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAGAAGCATAAGGGAAA	NA	False	NA	NA	False	NA	NA	NA	111776420	111777916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111776400_111777900
80869	chr10	+	2649	9	FSM	ENSMUSG00000063334.17	ENSMUST00000075924.8	3451	9	6	796	6	-796	multi-exon	FALSE	canonical	3	311	junction_5	40.3978263647934	84	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAAGTATTTCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	111808685	111822003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
80870	chr3	+	1082	5	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	263	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1993.34685579304	32	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGATGTGTTTGTCTTGC	3883	False	NA	NA	False	NA	NA	NA	88487240	88495721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494338_88495114
80871	chr1	-	1495	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	-5	897	-5	6	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	30	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTGTCATGTTTTAAAGT	NA	False	NA	NA	False	NA	NA	NA	161078794	161068578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
80872	chr12	+	6112	16	NNC	ENSMUSG00000052609.10	novel	4535	18	NA	NA	-2108	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	18.6256692646346	164	29	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGTCAAATAAACAGAGACA	NA	False	NA	NA	False	NA	NA	NA	76606903	76627237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76607293_76608979_76609078_76610528_76610599_76610870_76610918_76611030_76611182_76611275_76611408_76611571_76611755_76611932_76612026_76612265_76612353_76612557_76612592_76612941_76613041_76618377_76618433_76619168_76619520_76620020_76620135_76622630_76624051_76624448
80873	chr17	-	2586	14	Intergenic	novelGene_264	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGCGGTCGCTGGCCCGCA	NA	False	NA	NA	False	NA	NA	NA	53972470	53874476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_53874600_53917885_53918015_53931373_53931524_53936349_53936442_53939561_53939751_53945381_53945572_53948220_53948325_53951638_53951763_53955772_53955910_53960047_53960259_53961466_53961594_53966342_53967199_53970560_53970678_53972433
80874	chr4	+	3219	14	NIC	ENSMUSG00000028542.18	novel	3479	14	NA	NA	-113	1	combination_of_known_junctions	FALSE	canonical	1	3	junction_3	28.9097759923697	126	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTGAGCTGCTGATGTG	NA	False	NA	NA	False	NA	NA	NA	117692416	117726494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_117692675_117700215_117700333_117713071_117713146_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
80875	chr17	+	3532	6	NIC	ENSMUSG00000073468.13	novel	2490	7	NA	NA	0	-1	intron_retention	FALSE	canonical	3	775	junction_5	42.1872018507983	20	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTTTCTGGATCAACT	2996	False	NA	NA	False	NA	NA	NA	8530006	8546271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8542168_8543265_8543296_8545786
80876	chr3	+	1132	5	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	9	-5	intron_retention	FALSE	non_canonical	0	0	junction_4	1993.34685579304	366	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGATGTGTTTGTCTTGC	3629	False	NA	NA	False	NA	NA	NA	88486986	88495721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494220_88495200
80877	chr7	+	3110	5	NIC	ENSMUSG00000045411.17	novel	970	6	NA	NA	1	-2	intron_retention	FALSE	canonical	3	181	junction_1	251.946794978622	2	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTAGGGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	43896215	43901734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_43896841_43897333_43897720_43898965_43899024_43899444_43899484_43899732
80879	chr11	-	3981	7	NIC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	173	0	intron_retention	FALSE	canonical	3	923	junction_5	52.8122986518187	23	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	9534	False	NA	NA	False	NA	NA	NA	69569848	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69567994_69568798_69569111_69569447_69569560_69569647
80880	chr3	-	1749	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	535.135203430323	4	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	NA	False	NA	NA	NA	98247240	98220485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220774_98221483_98221722_98222380_98222512_98223799_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
80881	chr16	-	4244	6	NNC	ENSMUSG00000022863.16	novel	3013	4	NA	NA	34346	30883	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	75	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGACTGGCTCCCGGCGG	NA	False	NA	NA	False	NA	NA	NA	78135878	78098641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_78098762_78122043_78122211_78125840_78126046_78130248_78130404_78131054_78131846_78133072
80882	chr4	+	8619	54	ISM	ENSMUSG00000028514.16	ENSMUST00000094933.5	10575	68	46177	4	46177	1	3prime_fragment	TRUE	canonical	3	61	junction_2	21.5483097871128	118	41	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTAGAATTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	106219607	106298515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_106219697_106219884_106219933_106225223_106225332_106225919_106226070_106227265_106227398_106228180_106228293_106229884_106229962_106230855_106230997_106231187_106231242_106232843_106232960_106234525_106234593_106234705_106234817_106236235_106236335_106236425_106236600_106237265_106237352_106237624_106237719_106239431_106239588_106242619_106242718_106244675_106244772_106244886_106245116_106245697_106245858_106247389_106247546_106249554_106249626_106254365_106254527_106256246_106256309_106258167_106258360_106259236_106259355_106261120_106261266_106263587_106263708_106264209_106264336_106265133_106265233_106266008_106266092_106266480_106266623_106266807_106266928_106267328_106267550_106267980_106268106_106268496_106268639_106269288_106269440_106270775_106270872_106271571_106271676_106273164_106273279_106275388_106275486_106277630_106277748_106278155_106278249_106280656_106280760_106282501_106282624_106283682_106283797_106285684_106285751_106287721_106287789_106288810_106288890_106292175_106292252_106293529_106293617_106293941_106294053_106295973
80883	chr11	+	4021	21	ISM	ENSMUSG00000020128.16	ENSMUST00000109578.8	4273	23	25386	4	-4118	-4	3prime_fragment	FALSE	canonical	3	253	junction_5	41.4264106579366	134	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAGACTTAAAAGGCAACT	NA	False	NA	NA	False	NA	NA	NA	21214666	21271118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_21214872_21218784_21218864_21221703_21221739_21224997_21225130_21227674_21228061_21241032_21241160_21242023_21242132_21245340_21245397_21248753_21248851_21249977_21250319_21255650_21255781_21256365_21256548_21256908_21257022_21258738_21258803_21261076_21261183_21262239_21262328_21262850_21262973_21263083_21263165_21264918_21265027_21266791_21266887_21269752
80884	chr15	-	1764	13	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	-53	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	649.427097952923	2	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2860	False	NA	NA	False	NA	NA	NA	77854898	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849239_77850834_77850968_77851502_77851672_77852656_77852790_77854882
80885	chr2	-	4463	3	NIC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	-463	4	intron_retention	FALSE	canonical	3	267	junction_2	36	5	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGCAGTTGTGATG	NA	False	NA	NA	False	NA	NA	NA	5882298	5875835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_5876833_5878553_5881373_5881651
80886	chr7	-	2214	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	119	0	-3	0	multi-exon	FALSE	canonical	3	356	junction_2	34	1	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3980	False	NA	NA	False	NA	NA	NA	45175573	45172340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45172747_45173162_45174816_45175418
80887	chr8	-	4880	3	NNC	ENSMUSG00000031665.8	novel	5265	4	NA	NA	10832	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	120	8	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACATATTGTGTCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	89759958	89753869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_89755447_89756571_89756626_89756709
80888	chr5	-	7186	24	NIC	ENSMUSG00000049550.18	novel	6133	24	NA	NA	1	259	combination_of_known_junctions	FALSE	canonical	3	32	junction_10	10.6481802628972	25	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTATATGTGTATATATT	NA	False	NA	NA	False	NA	NA	NA	123794080	123716636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123717566_123718062_123718188_123720782_123720833_123721346_123721498_123721583_123721702_123728855_123728909_123741661_123741783_123747301_123747409_123749884_123750002_123751130_123753399_123755398_123755615_123755719_123755886_123759858_123760016_123760818_123760903_123761275_123761334_123765356_123765474_123768287_123769233_123778556_123778618_123779840_123779945_123780481_123780680_123784145_123784369_123785903_123786029_123791514_123792084_123793956
80889	chr13	+	5272	37	Intergenic	novelGene_1330	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	14	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCGCCGCGCAGCCCGGC	NA	False	NA	NA	False	NA	NA	NA	24196481	24464899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_24197444_24206478_24206628_24208308_24208519_24209836_24209919_24220167_24220591_24225654_24225767_24228154_24228354_24228998_24229066_24248559_24248715_24251117_24251205_24253615_24253788_24257920_24258055_24259594_24259726_24265913_24266011_24272960_24273054_24276487_24276560_24278382_24278560_24282790_24282844_24282943_24283042_24283562_24283647_24290291_24290362_24292472_24292577_24295791_24295868_24295994_24296075_24299457_24299564_24305823_24305906_24321116_24321215_24323271_24323363_24325641_24325715_24338660_24338734_24338965_24339035_24339369_24339478_24348785_24348906_24357598_24357661_24362191_24362244_24460442_24460538_24464543
80890	chr8	-	2577	8	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	0	-12	intron_retention	FALSE	canonical	3	78	junction_7	15.556349186104	58	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCTGGAGGAACTATTC	NA	False	NA	NA	False	NA	NA	NA	27713856	27687503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27690373_27690749_27690932_27692399_27692680_27713715
80891	chr18	+	2176	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	32	2	0	-2	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	94	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTTTTTAAGACTGGAT	NA	False	NA	NA	False	NA	NA	NA	60693839	60705880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
80892	chr10	+	3283	6	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	12	-984	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	172.503449240878	306	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGGACTGTAGTAGTATG	NA	False	NA	NA	False	NA	NA	NA	52293654	52315295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_52293703_52294028_52294265_52305288_52305415_52306162_52306313_52309440_52309541_52312672
80893	chr11	-	2601	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	-12	24	-12	-24	multi-exon	TRUE	canonical	3	770	junction_1	49.2161035848126	636	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTTTTATTGTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	93776604	93750092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
80894	chr11	+	1962	5	NNC	ENSMUSG00000000594.8	novel	4127	4	NA	NA	-23	-2131	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	149.824063487812	80	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCCTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	54988917	55001724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203_55001252_55001308
80895	chr11	+	3506	1	NIC	ENSMUSG00000071866.13	novel	1170	5	NA	NA	-5	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	511	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTGTCCTTGTTTGTAT	66	False	NA	NA	False	NA	NA	NA	6366306	6369812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6366300_6369800
80896	chr17	+	3415	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	-48	-1618	-5	1615	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	1633	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTGGTTCCACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	37313368	37323142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
80898	chr10	+	5691	21	FSM	ENSMUSG00000019802.14	ENSMUST00000019937.5	6032	21	329	12	19	-12	multi-exon	TRUE	canonical	3	208	junction_15	23.0789947788026	143	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTGCATTATTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	42637820	42708498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_42637885_42659437_42659538_42665295_42665411_42667174_42667288_42670770_42670833_42672201_42672261_42673678_42673730_42674742_42674852_42677628_42677724_42677817_42677951_42679885_42679979_42681071_42681227_42682519_42682668_42686838_42686922_42688431_42688492_42688660_42688835_42691050_42691210_42692363_42692466_42699876_42699976_42703872_42703978_42704886
80899	chr11	+	2520	3	ISM	ENSMUSG00000071866.13	ENSMUST00000137829.8	677	4	410	-132	-26	-9	3prime_fragment	FALSE	canonical	3	36680	junction_2	619	11	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAACTAAATAAGAACTG	45	False	NA	NA	False	NA	NA	NA	6366285	6369795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_6368315_6369112_6369286_6369477
80900	chrX	+	2325	7	NNC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-21	266	intron_retention	TRUE	canonical	0	0	junction_5	149.768432365881	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCCAGCTAGTGTGTCTT	1102	False	NA	NA	False	NA	NA	NA	20664031	20719955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718137_20719699_20719798
80901	chr11	+	3774	5	NIC	ENSMUSG00000007739.11	novel	1634	13	NA	NA	-2488	186	intron_retention	FALSE	canonical	3	5016	junction_1	355.609336210398	10	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22948448	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_22950955_22951361_22951473_22951559_22952402_22952816_22952931_22953136
80902	chr11	+	2155	10	Antisense	novelGene_ENSMUSG00000025173.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	54	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTCGCGCGGCGCTAGG	NA	False	NA	NA	False	NA	NA	NA	121218057	121245180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_121219296_121219675_121219745_121220155_121220254_121220972_121221059_121226210_121226384_121227794_121227897_121229382_121229472_121231943_121232042_121240057_121240136_121245056
80903	chr14	+	2861	1	Genic_Genomic	ENSMUSG00000041445.10	novel	NA	NA	NA	NA	-664	-20267	mono-exon	FALSE	NA	NA	NA	NA	NA	3	55	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTCCCAGGGCAGAAGAG	4226	False	NA	NA	False	NA	NA	NA	34096757	34099618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_34096800_34099600
80904	chr2	+	3230	9	ISM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	37	25029	37	-14512	5prime_fragment	FALSE	canonical	3	2348	junction_1	203.566289878752	23	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTCTCTCCTCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	31360255	31385655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156
80905	chr17	+	2825	3	Antisense	novelGene_ENSMUSG00000117333.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAATTTTTGAAATCCAA	NA	False	NA	NA	False	NA	NA	NA	22995051	22998901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_22997582_22998380_22998507_22998732
80906	chr11	-	4953	29	NIC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	-7	-11	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	43.2524624756104	99	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAAAGAACGCTGTGGG	NA	False	NA	NA	False	NA	NA	NA	33463649	33161805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
80907	chr7	-	1848	3	Antisense	novelGene_ENSMUSG00000025491.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	149	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATTTATTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	140549719	140546153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_140547478_140548145_140548350_140549399
80908	chr18	+	6080	24	ISM	ENSMUSG00000037416.14	ENSMUST00000180611.8	11319	43	56142	27	-5284	-27	3prime_fragment	FALSE	canonical	3	84	junction_2	15.4102070119525	114	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTTTAAATAAACAATCAT	2135	False	NA	NA	False	NA	NA	NA	50021878	50097294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_50021953_50022529_50022628_50023682_50023849_50024457_50024720_50026285_50027365_50028048_50028241_50031770_50031848_50035327_50035456_50035846_50036096_50045709_50045865_50050645_50050789_50052954_50053041_50053896_50054099_50055664_50055783_50064977_50065065_50067650_50067773_50068258_50068401_50072615_50072677_50084262_50084391_50088883_50088977_50090368_50090461_50091463_50091517_50094124_50094343_50095239
80909	chr14	-	2565	15	NNC	ENSMUSG00000021810.4	novel	3132	14	NA	NA	-7	-400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	138.101504373428	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCAGTCTGTGACATTC	NA	False	NA	NA	False	NA	NA	NA	20398145	20370319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20370616_20370738_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
80910	chr17	-	1632	8	NNC	ENSMUSG00000023795.17	novel	1175	7	NA	NA	6	12615	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	4.7723694538543	2	43	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGTAGAGTTGAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	3134351	3114237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_3114736_3119281_3119347_3126774_3127058_3127567_3127722_3127962_3128110_3129274_3129414_3129629_3129867_3134242
80911	chrX	+	2019	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	305	0	-305	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	3131	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCACTGCAATTCTG	NA	False	NA	NA	False	NA	NA	NA	12454039	12482983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
80912	chr14	-	2983	4	NIC	ENSMUSG00000022160.19	novel	1091	7	NA	NA	6	108	intron_retention	FALSE	canonical	3	150	junction_3	15.6418242755334	2	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGGGGTTTGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	52542575	52534818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52535116_52535325_52537563_52537640_52537859_52542344
80913	chr2	-	4445	5	NNC	ENSMUSG00000087179.9	novel	874	4	NA	NA	-8	2343	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	64.0097648800556	2	102	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	156681728	156672625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156675347_156675537_156676959_156679742_156679834_156680337_156680457_156681635
80914	chr4	+	3365	7	NIC	ENSMUSG00000028608.16	novel	1551	7	NA	NA	-2	-6	intron_retention	FALSE	canonical	3	15	junction_1	271.812844108262	50	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTATACTTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	107747102	107754993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_107747211_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069
80915	chr19	+	1205	4	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	315	2	intron_retention	FALSE	canonical	3	171	junction_1	2854.92428387631	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540907	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5541077_5542524_5542833_5543182_5543260_5543408
80916	chr19	+	759	2	NNC	ENSMUSG00000056201.9	novel	771	3	NA	NA	1932	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5542524	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5542771_5543546
80917	chr19	+	1600	4	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	1113	2	intron_retention	FALSE	canonical	2	105	junction_1	2886.03337934035	6	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5541705	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5542270_5542524_5542833_5543182_5543260_5543408
80918	chr19	+	986	5	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	10	2	intron_retention	FALSE	non_canonical	0	0	junction_4	2714.10412244998	35	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540553	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543590_5543716
80919	chr19	+	1017	4	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	5	2	intron_retention	FALSE	canonical	0	0	junction_2	2951.60171206528	23	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540517	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542711_5543192_5543260_5543408
80920	chr8	+	1087	1	FSM	ENSMUSG00000053038.9	ENSMUST00000065243.9	498	1	-54	-535	-54	535	mono-exon	FALSE	NA	NA	NA	NA	NA	21	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CACCATGAAAAAAAAAACTT	NA	False	NA	NA	False	NA	NA	NA	42699893	42700980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_42699900_42701000
80921	chr19	+	425	1	ISM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	3150	1172	3040	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	5543632	5544057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5543600_5544100
80922	chr8	+	866	2	Genic_Genomic	ENSMUSG00000053038.9	novel	498	1	NA	NA	-18	537	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCATGAAAAAAAAAACTTCA	NA	False	NA	NA	False	NA	NA	NA	42699929	42700982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_42700372_42700558
80923	chr2	-	2659	13	NIC	ENSMUSG00000027423.16	novel	2512	14	NA	NA	-6	-411	intron_retention	FALSE	canonical	3	1124	junction_12	126.337730794178	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATATGGAGTGCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	144112710	144092453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
80924	chr19	+	2263	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	275	18	-6	-18	multi-exon	FALSE	canonical	3	703	junction_2	59.7581793564697	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCTTTAACTTCTCTGAA	2067	False	NA	NA	False	NA	NA	NA	5417043	5421536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
80925	chr19	+	3304	8	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-1	-104	intron_retention	FALSE	canonical	3	190	junction_5	5.40974177964614	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCACAGCAGCATCTGGA	6942	False	NA	NA	False	NA	NA	NA	8719169	8733329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8727137_8727269_8727392_8732272
80926	chr8	-	2666	4	ISM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	2727	3887	2727	432	3prime_fragment	FALSE	canonical	3	5050	junction_1	1001.55789758866	12	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAAAATGTGCGGTGTG	NA	False	NA	NA	False	NA	NA	NA	127669863	127661303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928
80927	chr9	-	2872	10	Antisense	novelGene_ENSMUSG00000032519.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	36	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATTACCCGAGACAAGC	NA	False	NA	NA	False	NA	NA	NA	119955092	119939480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_119939638_119942294_119942334_119945565_119945670_119946503_119946602_119948947_119949071_119949321_119949501_119949736_119949911_119951156_119951325_119952705_119953781_119954337
80928	chr17	-	3624	5	Antisense	novelGene_ENSMUSG00000007038.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTAGTCCATCAGCATG	9997	False	NA	NA	False	NA	NA	NA	35154899	35150254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35150521_35150888_35151084_35151540_35153158_35153254_35153482_35153580
80929	chr9	+	2335	5	FSM	ENSMUSG00000003299.11	ENSMUST00000213977.2	2317	5	-28	10	10	-10	multi-exon	FALSE	canonical	3	966	junction_4	55.0244263941025	29	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCACAAGACTTGAAAATG	NA	False	NA	NA	False	NA	NA	NA	20914223	20920117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122
80930	chrX	+	2476	3	NNC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	1339	-7	intron_retention	TRUE	canonical	0	0	junction_1	141.5	3	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACTTCACAGCTGTACT	NA	False	NA	NA	False	NA	NA	NA	100839630	100842237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100840469_100840516_100841990_100842072
80931	chr9	-	7874	46	Fusion	ENSMUSG00000096655.3_ENSMUSG00000097777.8	novel	1490	2	NA	NA	3005	-2104	multi-exon	TRUE	non_canonical	0	0	junction_1	0	127	79	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGCGGAGCGTCGACGGA	NA	False	NA	NA	False	NA	NA	NA	95833689	95739708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_95739834_95743418_95743513_95744834_95744985_95747019_95747898_95748634_95748815_95749546_95749738_95751933_95752124_95752670_95752826_95753056_95753250_95753486_95753737_95756125_95756320_95756401_95756503_95756753_95756926_95757644_95757816_95760503_95760697_95763269_95763464_95765167_95765261_95767393_95767524_95770148_95770295_95772813_95772902_95775463_95775594_95779587_95779795_95781088_95781202_95785713_95785828_95789344_95789485_95790300_95790494_95792529_95792707_95796985_95797153_95798480_95798568_95802390_95802487_95802716_95802894_95803701_95803884_95804798_95804959_95809219_95809400_95814380_95814524_95817529_95817628_95818345_95818579_95819564_95819705_95821204_95821403_95822921_95823065_95824636_95824789_95827139_95827297_95827395_95827547_95829138_95829293_95832595_95832702_95833501
80932	chr19	+	1052	1	ISM	ENSMUSG00000024998.18	ENSMUST00000182481.8	8357	33	43272	257982	188	1382	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTAAGAGTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	38512840	38513892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_38512800_38513900
80933	chr10	-	2711	18	NNC	ENSMUSG00000020048.14	novel	2825	18	NA	NA	47	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1298.77133047282	1	126	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATCCCAAATACTCAG	NA	False	NA	NA	False	NA	NA	NA	86541326	86526718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_86526993_86527492_86527605_86527999_86528156_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540201_86540261_86541170
80934	chr4	-	1570	7	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	518	-1027	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	571.330732199446	2	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGAGAGCTGGCGCCCTC	NA	False	NA	NA	False	NA	NA	NA	141323262	141304399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317362_141323239
80935	chr19	-	3174	1	FSM	ENSMUSG00002076852.1	ENSMUST00020181828.1	152	1	-1041	-1981	-1041	1981	mono-exon	FALSE	NA	NA	NA	NA	NA	12	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGAATTGTCATGGCT	10001	False	NA	NA	False	NA	NA	NA	5895506	5892332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5892300_5895500
80936	chr3	+	3045	8	NNC	ENSMUSG00000027555.9	novel	2299	7	NA	NA	22	973	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	47.5540508800464	661	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTAAGACTCATTAGC	2201	False	NA	NA	False	NA	NA	NA	14706808	14729035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514_14728764_14728968
80937	chr15	-	2701	10	FSM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	-100	-688	-1	688	multi-exon	FALSE	canonical	3	252	junction_2	15.084944665313	1036	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAAGTGTTAAGGTTC	1244	False	NA	NA	False	NA	NA	NA	82223127	82213044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
80938	chr3	+	868	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	99	-2	5	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	18	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTTAAACTTGCTTAATA	NA	False	NA	NA	False	NA	NA	NA	137570349	137572584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
80939	chr3	+	939	6	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5855.04061130237	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570313	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146_137572305_137572368
80940	chr1	-	7516	15	FSM	ENSMUSG00000026469.15	ENSMUST00000027741.12	7492	15	-75	51	3	-51	multi-exon	FALSE	canonical	2	7	junction_5	3.69569523436472	42	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAATGTGCTTATGTGT	NA	False	NA	NA	False	NA	NA	NA	155293150	155151497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_155156817_155158958_155159181_155165940_155166078_155168854_155169022_155183367_155183563_155184696_155184869_155188504_155188685_155188916_155189108_155200059_155200142_155204344_155204429_155206083_155206234_155207908_155208133_155221298_155221401_155260356_155260409_155292911
80941	chr6	+	1486	9	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-27	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2038.1170193036	5	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5088	False	NA	NA	False	NA	NA	NA	85428973	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443082_85444992
80942	chr9	-	1832	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	-67	8	-65	0	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	849	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	48406664	48400008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
80943	chr1	-	3018	20	FSM	ENSMUSG00000026594.15	ENSMUST00000192343.6	4398	20	10	1370	4	-8	multi-exon	FALSE	canonical	3	20	junction_15	76.9001222942088	214	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAAATATAAAACCTTTT	NA	False	NA	NA	False	NA	NA	NA	156767159	156635699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156720477_156720583_156728155_156728207_156729355_156729461_156735208_156735349_156767058
80944	chr16	+	4204	9	FSM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	-53	5679	-53	41	multi-exon	FALSE	canonical	3	136	junction_3	9.03811374126261	84	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACAGCATGATAT	NA	False	NA	NA	False	NA	NA	NA	33201152	33319054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_33201398_33241690_33241773_33247563_33247700_33254995_33255345_33277245_33277372_33287224_33287349_33288469_33288554_33315714_33315834_33316115
80945	chr15	-	4152	1	NIC	ENSMUSG00000047878.14	novel	2092	3	NA	NA	20812	-44	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	30	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTAGACACTGGGGGC	7651	False	NA	NA	False	NA	NA	NA	83115118	83110966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_83111000_83115100
80946	chr6	-	4074	8	NIC	ENSMUSG00000030322.13	novel	3614	8	NA	NA	-8	0	intron_retention	FALSE	canonical	3	62	junction_7	15.9770243200181	6	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTTTGGCATTGTGTT	7873	False	NA	NA	False	NA	NA	NA	115830340	115817657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115829645
80947	chr9	-	6540	21	NNC	ENSMUSG00000111471.2	novel	597	5	NA	NA	9882	22373	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	88	13	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCGGCCCCCAGGCAGCG	NA	False	NA	NA	False	NA	NA	NA	64991755	64939790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64939901_64942152_64942291_64944247_64944523_64949544_64949657_64950965_64951142_64952901_64953070_64958670_64958783_64960326_64960460_64961054_64961112_64961697_64961801_64962107_64962288_64963073_64963234_64967484_64967565_64970708_64970861_64971099_64971234_64973626_64973775_64981716_64981866_64983015_64983170_64985243_64985388_64985955_64986066_64988010
80948	chr8	+	2033	8	NNC	ENSMUSG00000031585.14	novel	1664	8	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	465.252838875415	19	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTGTTTTAAAAAGCTA	5323	False	NA	NA	False	NA	NA	NA	34222158	34267203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_34222703_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
80949	chr16	-	6044	21	ISM	ENSMUSG00000049076.13	ENSMUST00000230614.2	3414	23	46559	-3001	46388	0	3prime_fragment	FALSE	canonical	3	119	junction_10	15.2966499600403	95	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGCTGTAAGTGCTCC	NA	False	NA	NA	False	NA	NA	NA	30973421	30911232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_30915265_30920642_30920705_30922316_30922428_30923662_30923773_30924302_30924491_30925867_30925961_30926844_30927006_30928458_30928551_30929318_30929389_30929710_30929920_30934819_30934926_30936075_30936177_30938213_30938266_30946138_30946252_30950077_30950153_30952346_30952443_30955354_30955400_30958288_30958473_30960556_30960616_30972523_30972578_30973390
80950	chr6	+	2003	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	-171	-107	-93	78	multi-exon	FALSE	canonical	3	834	junction_4	68.2692280606717	2306	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAGTGGATTGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	66512280	66518082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
80951	chr10	-	9127	22	Antisense	novelGene_ENSMUSG00000019841.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCCCACTATAAAACAAGC	1712	False	NA	NA	False	NA	NA	NA	39751197	39693144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_39693372_39696440_39696586_39697100_39701253_39703703_39704600_39706892_39706982_39708515_39708638_39711153_39711347_39712619_39712732_39714435_39714553_39716879_39716998_39719404_39719524_39722135_39722277_39722661_39722908_39723968_39724074_39727859_39728068_39730692_39730805_39735099_39735216_39738684_39738821_39739726_39739923_39740587_39740836_39743287_39743497_39750077
80952	chr16	+	1853	8	NIC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	-98	38	combination_of_known_splicesites	FALSE	canonical	1	17	junction_3	252.060893193591	5	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	6972	False	NA	NA	False	NA	NA	NA	38378961	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38379125_38384476_38384664_38393415_38393639_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
80953	chr1	+	3868	9	NIC	ENSMUSG00000073609.10	novel	3232	10	NA	NA	0	-329	intron_retention	FALSE	canonical	3	21	junction_1	9.50575483588757	6	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAAGTGCCACTACACCC	NA	False	NA	NA	False	NA	NA	NA	93752961	93779741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
80955	chr7	-	2614	17	FSM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	-211	6347	-207	62	multi-exon	FALSE	canonical	3	189	junction_4	26.4359485360371	458	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTGGGTTTTTGT	7492	False	NA	NA	False	NA	NA	NA	44498710	44490393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
80956	chr4	-	2427	5	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	103	junction_2	13.9731886124821	3	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1937	False	NA	NA	False	NA	NA	NA	116664839	116661198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663957_116664664
80957	chr19	-	3373	7	NNC	ENSMUSG00000040451.19	novel	3262	6	NA	NA	36	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	88.4786540484326	1	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAAAACTTATACTGAA	8055	False	NA	NA	False	NA	NA	NA	32188377	32100150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32176298_32176469_32188227
80958	chr17	-	7097	18	FSM	ENSMUSG00000023845.8	ENSMUST00000041047.4	12052	18	-2	4957	1	698	multi-exon	FALSE	canonical	3	25	junction_8	4.93557105021248	37	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATATCAAAAAAGTTTC	9891	False	NA	NA	False	NA	NA	NA	17845311	17746628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_17750143_17750738_17750821_17751399_17751541_17757175_17757338_17758781_17758967_17765072_17765230_17766645_17766830_17773131_17773221_17773423_17773585_17783014_17783147_17786944_17787077_17788582_17788697_17791135_17791291_17791887_17792009_17794208_17794341_17795510_17795650_17798793_17799635_17844655
80959	chr7	-	3302	12	NIC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	11093	-3	intron_retention	FALSE	canonical	3	315	junction_7	108.967126743545	14	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTTTCGGCCTCTGCCT	NA	False	NA	NA	False	NA	NA	NA	27021945	27004569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27004976_27005491_27005645_27005986_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713
80960	chr7	+	3931	16	NNC	ENSMUSG00000055629.6	novel	3556	20	NA	NA	147	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	51.9368847737328	184	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTTGTTTTCTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	140644553	140652309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785_140648938_140649590_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
80961	chr2	-	3528	9	FSM	ENSMUSG00000035778.18	ENSMUST00000102794.8	3606	9	80	-2	80	-2	multi-exon	FALSE	canonical	3	26	junction_8	26.0836994117016	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGGTCTGGTATGGAT	NA	False	NA	NA	False	NA	NA	NA	35351381	35290192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35351206
80962	SIRV3	+	1757	1	NIC	SIRV3A	novel	2467	5	NA	NA	2053	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGAACCATCTCATTTAACAG	NA	False	NA	NA	False	NA	NA	NA	6056	7813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV3_+_6100_7800
80963	chr19	-	6434	6	NNC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	0	30	intron_retention	FALSE	non_canonical	0	0	junction_2	449.541099344654	22	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATATAGTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	41921737	41911974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41912528_41913149_41913708_41914500_41917835_41918043_41919870_41921487_41921604_41921690
80964	chr12	-	4962	16	FSM	ENSMUSG00000021236.17	ENSMUST00000110272.9	4972	16	10	0	-5	0	multi-exon	TRUE	canonical	3	43	junction_8	4.47014789713072	96	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTCCTTTGGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	84455793	84420648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179_84452250_84455743
80965	chr2	-	3708	4	NIC	ENSMUSG00000027286.17	novel	1962	6	NA	NA	0	-10	intron_retention	FALSE	canonical	3	148	junction_2	19.1891172861657	4	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAATGAACTTTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	120439836	120434728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_120435740_120436428_120438549_120439153_120439293_120439398
80966	chr17	-	2853	12	Antisense	novelGene_ENSMUSG00000007603.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACTACAGCAATGCTGCT	4643	False	NA	NA	False	NA	NA	NA	57077073	57071764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_57072791_57073779_57074288_57074631_57074674_57074781_57074929_57075026_57075149_57075345_57075412_57075515_57075628_57075804_57075902_57076048_57076125_57076248_57076437_57076531_57076661_57076733
80967	chr4	-	3809	17	Antisense	novelGene_ENSMUSG00000076444.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTCTCATAAAACTGAAG	NA	False	NA	NA	False	NA	NA	NA	108904913	108872566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108874891_108875030_108875118_108876154_108876307_108881398_108881473_108884630_108884728_108885946_108886068_108889643_108889705_108890486_108890559_108891875_108891946_108895169_108895250_108896854_108896974_108897050_108897110_108897379_108897435_108900570_108900678_108901744_108901867_108903789_108903876_108904790
80968	chr2	+	3608	5	NIC	ENSMUSG00000027455.17	novel	1364	9	NA	NA	-919	0	intron_retention	FALSE	canonical	3	1303	junction_3	59.721750644133	6	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	NA	False	NA	NA	NA	151343327	151353225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
80969	chr4	+	3429	6	NNC	ENSMUSG00000028647.14	novel	1685	5	NA	NA	-14	3039	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	127.613478911908	1121	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTATGTGTATGAGTG	NA	False	NA	NA	False	NA	NA	NA	123798819	123809101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885_123807116_123808215
80970	chr1	+	4240	11	NNC	ENSMUSG00000042251.13	novel	2305	14	NA	NA	0	-2504	intron_retention	FALSE	non_canonical	0	0	junction_2	27.2846110472552	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	131725135	131746695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131725325_131726333_131726421_131728829_131729065_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131734636_131734709_131739772_131739942_131741628_131741729_131743724
80972	chr9	-	7181	16	FSM	ENSMUSG00000037112.17	ENSMUST00000176663.8	4107	16	76	-3150	76	3150	multi-exon	FALSE	canonical	3	21	junction_1	10.4796098315835	44	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAAAGCCTGGTGATATG	NA	False	NA	NA	False	NA	NA	NA	50920160	50800950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50805382_50806643_50807262_50807943_50808036_50808672_50808784_50809487_50809652_50809781_50810067_50810619_50810849_50818706_50818872_50824683_50824837_50826741_50826963_50828313_50828438_50828827_50828953_50846715_50846878_50906907_50906972_50909799_50909917_50920040
80973	chr5	+	2217	1	ISM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	79303	2	24237	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	16	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTGTGTGCCCGTTTG	NA	False	NA	NA	False	NA	NA	NA	93320598	93322815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_93320600_93322800
80974	chr2	+	2055	10	NNC	ENSMUSG00000026664.8	novel	1438	9	NA	NA	-3776	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	137.343041728044	1884	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGGCATATTAAGTCAAT	133	False	NA	NA	False	NA	NA	NA	4920053	4943537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_4920521_4923675_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
80975	chr5	+	2211	13	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	9	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	970.651485114794	1	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAATATTTCCTTCTG	NA	False	NA	NA	False	NA	NA	NA	45650724	45669993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652498_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668564_45669242
80976	chr3	+	4167	11	NNC	ENSMUSG00000039047.18	novel	1761	12	NA	NA	0	-21	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	161.640836424463	9	69	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACTTTAAAAGGAAAAGAAA	3970	False	NA	NA	False	NA	NA	NA	152419749	152494642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152491032_152491893_152492343
80977	chr16	-	8248	17	NNC	ENSMUSG00000087526.3	novel	427	4	NA	NA	-12844	97862	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	57	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCGGATCTCGCGAGAC	NA	False	NA	NA	False	NA	NA	NA	13235390	13074375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13074417_13082940_13083002_13144243_13144433_13196125_13196192_13197701_13197760_13199391_13199466_13202055_13202218_13203467_13203647_13212684_13212823_13216085_13216356_13217946_13218042_13218514_13219547_13221016_13221173_13223110_13223270_13223626_13223765_13227478_13227540_13230021
80978	chr18	+	3566	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	39	-2415	0	2415	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	2028	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAACACAGAATTTAACTC	NA	False	NA	NA	False	NA	NA	NA	35686462	35693784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
80979	chr11	+	4651	1	Intergenic	novelGene_2408	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	183	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGAGGTGTTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	77604138	77608789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_77604100_77608800
80980	chr16	-	3937	9	NIC	ENSMUSG00000003527.10	novel	2821	10	NA	NA	2	-8	intron_retention	FALSE	canonical	3	145	junction_6	19.4032052764485	8	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTTAAGTTATTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	17729177	17718580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17720188_17720681_17720798_17722865_17724238_17724972_17725107_17725383_17725502_17725613_17725787_17727768_17727865_17727951_17728121_17729025
80981	chr16	+	5212	11	ISM	ENSMUSG00000022897.16	ENSMUST00000023614.5	5754	12	40514	470	40514	-20	3prime_fragment	FALSE	canonical	3	100	junction_2	26.9979628861142	144	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGGAGGTTTAACAGATAA	1437	False	NA	NA	False	NA	NA	NA	94412279	94495906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_94412364_94460355_94460553_94464600_94464721_94466774_94466964_94469663_94469812_94472161_94472449_94474195_94474343_94478310_94478452_94485893_94486201_94487337_94487463_94492439
80982	chr7	-	1816	4	NNC	ENSMUSG00000070436.13	novel	2215	5	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	691.595739335247	42	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCTTTCTAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	99002412	98994595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995498_98996472_98996572_98998009_98998672_99002259
80984	chr5	+	2416	16	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_15	88.3937152114837	17	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTAAAACAATGTTAGTAG	9173	False	NA	NA	False	NA	NA	NA	110987839	111021995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111020316_111020447_111021345
80985	chr10	+	2891	7	FSM	ENSMUSG00000019810.16	ENSMUST00000121465.3	5741	7	57	2793	-26	699	multi-exon	FALSE	canonical	3	139	junction_3	15.7418409201578	477	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCCACCAACTGAAGACCAA	NA	False	NA	NA	False	NA	NA	NA	13376801	13391986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450
80986	chr4	+	2165	9	Antisense	novelGene_ENSMUSG00000028873.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCAACGGGCACAGCCT	7706	False	NA	NA	False	NA	NA	NA	124812262	124830694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_124812824_124813405_124814178_124815003_124815094_124815788_124815856_124817507_124817626_124820457_124820533_124824865_124824906_124830147_124830277_124830381
80987	chr16	-	5880	5	Antisense	novelGene_ENSMUSG00000025612.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	138	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCCCGGTTCCGCCCCCG	NA	False	NA	NA	False	NA	NA	NA	87530214	87495798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_87495944_87512217_87512511_87515692_87517037_87519287_87519494_87526322
80988	chr5	+	3893	17	FSM	ENSMUSG00000029710.16	ENSMUST00000111055.9	4296	17	387	16	46	-16	multi-exon	FALSE	canonical	3	39	junction_6	71.8852166651809	298	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGGGATATGTCTCAGTC	NA	False	NA	NA	False	NA	NA	NA	137348820	137372766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_137348912_137352350_137352422_137352541_137352830_137355803_137356201_137358626_137358783_137359395_137359729_137360624_137360777_137361420_137361587_137363209_137363313_137363714_137363780_137363885_137364000_137364802_137365051_137367974_137368191_137368972_137369123_137370285_137370480_137370646_137370803_137371773
80989	chr11	-	2151	9	FSM	ENSMUSG00000020321.17	ENSMUST00000239073.2	1958	9	-175	-18	84	18	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	5573	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCACAAAACCCTGCATTC	NA	False	NA	NA	False	NA	NA	NA	21522109	21506673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
80990	chr6	+	5127	25	NNC	ENSMUSG00000108171.2	novel	5037	3	NA	NA	-1076	44673	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	42	60	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGGTCCCCTTGCAGGTG	1847	False	NA	NA	False	NA	NA	NA	120934728	121019132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_120934757_120935203_120936999_120937951_120938032_120938539_120938691_120939715_120939829_120950365_120950606_120959487_120959685_120978563_120978656_120979746_120979836_120985954_120986145_120998145_120998317_120999185_120999249_120999343_120999460_121001600_121001797_121003926_121004075_121006607_121006703_121007955_121008084_121010657_121010780_121010996_121011248_121013432_121013531_121014400_121014559_121014967_121015072_121015446_121015563_121017340_121017551_121018956
80991	chr19	-	1090	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	0	-54	combination_of_known_junctions	FALSE	canonical	3	122	junction_9	349.700542086801	38	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTCTATTCTTGGGG	5822	False	NA	NA	False	NA	NA	NA	46327099	46319038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
80992	chr18	-	1875	9	NNC	ENSMUSG00000024583.4	novel	1998	9	NA	NA	48	-224	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_2	401.332292963076	3735	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTAATAATGCAGGTATT	NA	False	NA	NA	False	NA	NA	NA	63825460	63796661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_63797404_63804652_63804758_63806868_63806946_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
80994	chr19	-	2079	6	NNC	ENSMUSG00000025190.14	novel	2058	9	NA	NA	-44	-4094	intron_retention	FALSE	non_canonical	0	0	junction_1	411.776929902587	1	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAATTTTATTTCTC	8393	False	NA	NA	False	NA	NA	NA	43512968	43492847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43493675_43493854_43493869_43495133_43495874_43496308_43496433_43504119_43504302_43512776
80995	chr17	+	1521	2	FSM	ENSMUSG00000023939.8	ENSMUST00000148537.2	510	2	-281	-730	-281	635	multi-exon	FALSE	canonical	3	1100	junction_1	0	373	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAGATTAAAAGAGCCAGT	NA	False	NA	NA	False	NA	NA	NA	46006060	46010056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_46006499_46008973
80996	chr8	-	4256	20	NNC	ENSMUSG00000031537.16	novel	3977	21	NA	NA	2	-100	intron_retention	FALSE	non_canonical	0	0	junction_10	34.9290535394739	1	103	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCACGCTTTGATTGTTCC	NA	False	NA	NA	False	NA	NA	NA	23196577	23149328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23161646_23161762_23162338_23162534_23163377_23163509_23164978_23165087_23168805_23168931_23171678_23171744_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
80997	chr14	-	2650	22	NNC	ENSMUSG00000025557.11	novel	3121	23	NA	NA	-248	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.2413062517189	17	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGAATATGTGTTTGTGT	2890	False	NA	NA	False	NA	NA	NA	121742912	121697034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_121697625_121702362_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
80998	chrX	-	4304	10	NIC	ENSMUSG00000031392.19	novel	3825	14	NA	NA	24	0	intron_retention	FALSE	canonical	3	311	junction_3	29.9592315581618	426	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATATGCCTTTTAATTTT	NA	False	NA	NA	False	NA	NA	NA	73067309	73057523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_73059108_73060153_73060304_73060735_73061118_73061735_73061973_73063505_73063572_73063933_73064142_73064548_73064668_73065454_73065570_73065790_73067140_73067215
80999	chr2	+	3124	6	ISM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	11	5975	11	-5975	intron_retention	FALSE	canonical	3	1002	junction_3	80.4174110500954	3	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAATATGCTTCCATAT	NA	False	NA	NA	False	NA	NA	NA	153583204	153609255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866
81000	chr5	-	3911	3	Antisense	novelGene_ENSMUSG00000029361.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	91	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACCAGGAAGCAAGGGC	NA	False	NA	NA	False	NA	NA	NA	118095406	118087645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_118087893_118090828_118090949_118091862
81001	chr3	+	4305	23	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	263	0	-7	0	intron_retention	FALSE	canonical	3	521	junction_3	132.146925493389	4	115	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	68912333	68941956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270
81002	chr19	-	2210	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	10	1975	10	-1975	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	1181	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTCTCAGCCAGACTCA	NA	False	NA	NA	False	NA	NA	NA	9112990	9089206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
81003	chr1	-	1211	2	ISM	ENSMUSG00000058076.13	ENSMUST00000081560.5	815	5	14129	-242	14126	242	3prime_fragment	FALSE	canonical	3	940	junction_1	0	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTTGACTCTTTGGAATC	8832	False	NA	NA	False	NA	NA	NA	170964031	170956733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_170957475_170963561
81004	chr10	+	4510	15	Antisense	novelGene_ENSMUSG00000047417.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	219	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCCCCCGGGACGCTGT	NA	False	NA	NA	False	NA	NA	NA	80377493	80397385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_80378316_80378398_80378657_80378739_80378858_80379134_80379246_80379480_80379555_80379836_80379953_80380116_80380254_80380592_80380708_80381296_80381425_80381711_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386899_80397096
81005	chr3	+	5051	6	ISM	ENSMUSG00000044098.15	ENSMUST00000068879.11	6712	7	14842	16	375	7	3prime_fragment	FALSE	canonical	3	59	junction_1	6.8818602136341	98	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATGTTTCAAAATGAATA	235	False	NA	NA	False	NA	NA	NA	103836308	103873936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_103836341_103860952_103861091_103861420_103861564_103867318_103867487_103868788_103868898_103869475
81006	chr4	-	5447	9	NIC	ENSMUSG00000028901.14	novel	6523	10	NA	NA	26	-17	intron_retention	FALSE	canonical	2	7	junction_8	20.2665827163831	6	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCTATGTATAAGTACTA	2949	False	NA	NA	False	NA	NA	NA	131979779	131950273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_131953774_131955182_131955306_131958296_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131979741
81007	chr2	+	1554	2	NNC	ENSMUSG00000035772.12	novel	2504	3	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1089	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAACCACCTGGTGTCAG	NA	False	NA	NA	False	NA	NA	NA	28358096	28361171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_28358107_28359627
81008	chr11	-	3934	17	NNC	ENSMUSG00000020273.14	novel	3747	22	NA	NA	-3	1210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	42.1559141017011	6	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATCTCACCTTGTAACC	1283	False	NA	NA	False	NA	NA	NA	23845239	23811435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_23813645_23818352_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
81009	chr7	+	3742	2	Antisense	novelGene_ENSMUSG00000097415.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCCAAACCTCAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	75426220	75430147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_75426538_75426722
81011	chr11	-	2970	12	NNC	ENSMUSG00000020419.12	novel	1343	11	NA	NA	-39	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	84.0111169345762	8	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAATTTATGTAACATGGG	NA	False	NA	NA	False	NA	NA	NA	4391144	4295805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4296667_4340152_4340189_4358589_4358844_4359006_4359159_4362212_4362281_4372900_4374041_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876_4390941_4391080
81012	chr13	+	3483	8	NNC	ENSMUSG00000042348.11	novel	1966	6	NA	NA	40	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	173.245372762661	2	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAGAACAGGCGTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	113931080	114293986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_113931233_114037538_114037690_114058782_114058928_114070599_114070660_114076929_114077011_114104117_114104327_114291239_114291978_114292039
81014	chr11	-	3965	25	NNC	ENSMUSG00000037275.15	novel	4922	28	NA	NA	-3596	-304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	88.6249020529156	1	162	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACACCACCCACGACAGC	NA	False	NA	NA	False	NA	NA	NA	58055190	58012419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032636_58036176_58036347_58037218_58037355_58038652_58038835_58039240_58039315_58041371_58041509_58042365_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082
81015	chr11	+	4195	11	FSM	ENSMUSG00000000142.16	ENSMUST00000052915.14	4260	11	59	6	59	-6	multi-exon	FALSE	canonical	3	13	junction_1	12.1720992437624	87	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATGTCAGCCTCATCT	NA	False	NA	NA	False	NA	NA	NA	108811233	108841603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_108811388_108813977_108814929_108822264_108822406_108830137_108830241_108832728_108832870_108833016_108833523_108833760_108833956_108834481_108834713_108835335_108835432_108836705_108836874_108840094
81016	chr17	+	5573	13	NNC	ENSMUSG00000063952.17	novel	4223	11	NA	NA	-15646	-13	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	73.5222471999689	231	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTATGGGCTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	29004417	29057502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29004515_29024902_29026374_29029486_29029644_29033559_29033692_29036038_29036168_29036459_29036773_29037309_29037613_29040059_29040567_29042946_29043041_29047317_29047416_29050287_29050386_29054735_29054891_29055483
81017	chr11	-	3265	19	NNC	ENSMUSG00000020687.14	novel	3160	19	NA	NA	9	-189	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_12	69.6386617467377	11	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTAAAGTTCATTGCCA	2075	False	NA	NA	False	NA	NA	NA	104441437	104395951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_104396507_104397963_104398121_104399172_104399248_104400996_104401126_104403726_104403845_104406197_104406407_104408201_104408355_104411489_104411660_104412206_104412415_104413548_104413649_104416876_104417011_104417688_104417882_104419088_104419301_104419403_104419559_104420166_104420265_104422555_104422682_104425563_104425712_104427420_104427497_104441188
81018	chr13	+	5801	24	FSM	ENSMUSG00000039219.19	ENSMUST00000110534.8	5864	24	56	7	49	-7	multi-exon	FALSE	canonical	3	31	junction_17	12.735494361632	6	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAATCCTTGATTTTGT	1492	False	NA	NA	False	NA	NA	NA	14238432	14373940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693_14338935_14339351_14339528_14344503_14344765_14355804_14355890_14358891_14359091_14361401_14362617_14365727_14365842_14367950_14368167_14369914_14370062_14372190
81019	chr14	+	2233	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	-11	12	-11	-12	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	6842	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAAGGACTAACCATAAAT	NA	False	NA	NA	False	NA	NA	NA	45567233	45587150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
81020	chr2	-	6570	37	FSM	ENSMUSG00000027309.19	ENSMUST00000044766.15	6628	37	18	40	-5	-40	multi-exon	FALSE	canonical	3	25	junction_2	14.9720933822533	112	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAATGCTAAGGACCAAT	NA	False	NA	NA	False	NA	NA	NA	130682036	130548159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130551239_130551857_130551952_130552731_130552798_130554179_130554383_130554871_130554947_130555316_130555424_130559180_130559268_130561759_130561896_130569067_130569106_130572708_130572835_130578386_130578546_130579298_130579388_130580900_130581019_130581290_130581390_130582320_130582410_130583736_130583884_130590604_130590709_130606372_130606461_130607607_130607659_130609529_130609601_130612591_130612710_130616978_130617025_130617646_130617692_130619124_130619202_130620336_130620425_130626343_130626381_130627378_130627461_130633771_130633908_130635908_130635965_130640086_130640186_130648790_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
81021	chr11	+	3647	1	Intergenic	novelGene_2249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	73	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACAACCAAAAAACCACCA	2619	False	NA	NA	False	NA	NA	NA	33206354	33210001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_33206400_33210000
81022	chr1	+	2175	1	FSM	ENSMUSG00000026439.15	ENSMUST00000187834.2	1923	1	-242	-10	-242	6	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACATGCTTGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	132431228	132433403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_132431200_132433400
81024	chr17	-	803	1	Intergenic	novelGene_300	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCATGGCAGTGGAGCAGC	7826	False	NA	NA	False	NA	NA	NA	80569949	80569146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_80569100_80569900
81025	chr4	+	2488	19	Intergenic	novelGene_1831	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	74	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTGCCTCTTACAAAGCG	5123	False	NA	NA	False	NA	NA	NA	41196325	41275094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41196532_41196727_41196814_41199226_41199266_41199493_41199590_41199720_41199903_41201463_41201534_41202273_41202460_41203533_41203573_41205525_41205740_41206156_41206330_41206837_41207105_41209352_41209570_41211704_41211829_41227219_41227277_41229694_41229847_41233603_41233718_41235518_41235597_41251538_41251672_41275039
81026	chr4	+	3308	9	Antisense	novelGene_ENSMUSG00000037295.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	61	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCTCCCCCGCCCTCCCC	1323	False	NA	NA	False	NA	NA	NA	134472082	134495310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_134474510_134475591_134475627_134476646_134476783_134477271_134477356_134477694_134477765_134482502_134482618_134484650_134484764_134486228_134486373_134495126
81027	chr14	+	1624	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	11	-307	-2	3	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	704	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAATTAAGTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	73747475	73756292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
81028	chr7	-	3929	15	FSM	ENSMUSG00000025507.14	ENSMUST00000106005.9	2900	15	-630	-399	7	1	multi-exon	FALSE	canonical	3	24	junction_13	13.1049531063017	63	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATACCTTTGCAGAGATCA	NA	False	NA	NA	False	NA	NA	NA	141023898	141018028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141018761_141018990_141019191_141019290_141019405_141019483_141019603_141019704_141019829_141019915_141020067_141020143_141020280_141020370_141020519_141020598_141020779_141020888_141021015_141021085_141021288_141021387_141021443_141021524_141021735_141022063_141022478_141022880
81029	chr13	-	3124	3	FSM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	-37	1369	-37	-1369	multi-exon	FALSE	canonical	3	221	junction_1	5.5	1151	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGCAATAACTTATCTTTC	NA	False	NA	NA	False	NA	NA	NA	23608073	23603899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23606506_23606652_23606853_23607755
81030	chr9	-	4214	18	ISM	ENSMUSG00000032228.17	ENSMUST00000034755.13	4621	20	2121	16	24	-7	3prime_fragment	FALSE	canonical	3	33	junction_6	15.869929781832	91	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAACATAGTAAACTAG	231	False	NA	NA	False	NA	NA	NA	72016982	71751565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_71753843_71757053_71757208_71763586_71763820_71765765_71765929_71766121_71766237_71775353_71775561_71777355_71777430_71783270_71783350_71789998_71790064_71790388_71790534_71790937_71791078_71792464_71792571_71824286_71824340_71829933_71830070_71851235_71851301_71907697_71907801_71922919_71922994_72016957
81031	chr3	+	1025	5	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	318	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1993.34685579304	113	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACCGATGTGTTTGTCTT	3938	False	NA	NA	False	NA	NA	NA	88487295	88495719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494338_88495114
81032	chr4	+	3913	2	Antisense	novelGene_ENSMUSG00000082176.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	0	77	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTTAGGAGCACTGGCC	NA	False	NA	NA	False	NA	NA	NA	147272952	147281367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147273436_147277937
81033	chr5	-	1526	3	NIC	ENSMUSG00000032959.13	novel	1240	4	NA	NA	-14	1	intron_retention	FALSE	canonical	3	2643	junction_2	60	14	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCGGGTATTTCCTTC	NA	False	NA	NA	False	NA	NA	NA	117425662	117420717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_117421531_117423785_117424310_117425473
81034	chr1	+	3132	4	NIC	ENSMUSG00000026377.13	novel	849	6	NA	NA	5537	-9	intron_retention	FALSE	canonical	3	402	junction_3	28.8790581563873	2	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGGCTTGAAGTGGGAC	NA	False	NA	NA	False	NA	NA	NA	118255418	118261543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_118257295_118258335_118258393_118260073_118260209_118260479
81035	chr8	-	409	3	ISM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	2851	-3	2851	3	3prime_fragment	FALSE	canonical	3	209	junction_2	18	10	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTTCCTAGAGTTGGAG	NA	False	NA	NA	False	NA	NA	NA	71216456	71215415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71215686_71215772_71215827_71216371
81037	chr11	-	4137	10	Genic_Genomic	ENSMUSG00000086507.2	novel	984	3	NA	NA	-2574	4743	multi-exon	FALSE	non_canonical	0	0	junction_1	0	75	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCAGATCCCCAAGGCTC	9935	False	NA	NA	False	NA	NA	NA	80071029	80044943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_80045135_80045814_80045945_80047768_80047863_80050988_80051067_80052971_80053085_80056496_80056644_80061501_80061586_80064911_80064975_80066879_80066957_80067869
81038	chr14	-	1042	1	FSM	ENSMUSG00000097589.10	ENSMUST00000193208.2	4098	1	4056	-1000	4056	1000	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAGAAGGAGTCAGATCT	NA	False	NA	NA	False	NA	NA	NA	61865285	61864243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_61864200_61865300
81039	chr19	+	6000	6	ISM	ENSMUSG00000024639.6	ENSMUST00000025541.6	5644	7	86827	-1057	26	1057	3prime_fragment	FALSE	canonical	3	23	junction_5	6.08604962188118	109	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTACTATAGTATTCTT	NA	False	NA	NA	False	NA	NA	NA	16197021	16365884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_16197137_16293380_16293536_16309440_16309570_16312344_16312475_16355520_16355675_16360567
81040	chr9	-	2982	1	Genic_Genomic	ENSMUSG00000011114.19	novel	NA	NA	NA	NA	6954	1540	mono-exon	FALSE	NA	NA	NA	NA	NA	2	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTATTTGCCCCAAGCACA	NA	False	NA	NA	False	NA	NA	NA	37561500	37558518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_37558500_37561500
81041	chr19	-	3604	15	FSM	ENSMUSG00000025016.12	ENSMUST00000237871.2	3170	15	129	-563	129	563	multi-exon	TRUE	canonical	3	1017	junction_13	71.1689926176006	255	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGTGTATTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	41252290	41201667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_41203579_41205539_41205617_41205786_41205871_41206608_41206756_41209675_41209745_41211522_41211663_41220781_41220913_41223119_41223215_41227116_41227284_41229015_41229148_41233882_41233961_41235081_41235243_41236344_41236468_41244583_41244780_41252197
81042	chr8	+	2680	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	141	4	0	-4	multi-exon	FALSE	canonical	3	1214	junction_12	88.1479391228044	769	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACCTGAAATGACTCTGT	NA	False	NA	NA	False	NA	NA	NA	69541438	69566359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
81043	chr6	-	3410	5	NIC	ENSMUSG00000029998.15	novel	4295	6	NA	NA	2	-641	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	76.6823806359714	2	81	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATTAAAACTTACAACTT	NA	False	NA	NA	False	NA	NA	NA	86374099	86363628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86373954
81044	chr7	-	3617	15	ISM	ENSMUSG00000048170.15	ENSMUST00000057557.14	4237	16	15296	258	-10341	-258	3prime_fragment	TRUE	canonical	3	440	junction_10	50.5416074302416	260	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTCTGCAGCTTTCTCAG	NA	False	NA	NA	False	NA	NA	NA	128326923	128298422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_128300295_128301042_128301132_128303966_128304132_128305218_128305353_128306202_128306369_128308771_128308890_128310805_128310930_128311505_128311685_128314387_128314489_128316122_128316275_128317669_128317815_128322288_128322391_128325659_128325702_128325791_128325933_128326836
81045	chr1	+	1431	5	Antisense	novelGene_ENSMUSG00000062580.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTACAATTCGCCAGGG	NA	False	NA	NA	False	NA	NA	NA	135229421	135237587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_135229741_135232166_135232804_135233624_135233958_135236874_135236939_135237509
81046	chr12	+	3781	13	FSM	ENSMUSG00000020646.18	ENSMUST00000110942.11	2351	13	6	-1436	-2	1005	multi-exon	FALSE	canonical	3	86	junction_3	25.3874148611735	130	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTCCCCCCAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	24881627	25011309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
81047	chr11	+	3661	5	FSM	ENSMUSG00000018740.15	ENSMUST00000102606.10	1828	5	17	-1850	0	1	multi-exon	FALSE	canonical	3	33	junction_2	4.96865172858795	1369	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGATTTTTAGAGTGTTCTT	5575	False	NA	NA	False	NA	NA	NA	68858973	68865192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68859864_68861549_68861616_68862009_68862163_68862494_68862630_68862775
81048	chr10	+	538	3	ISM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	7	45	7	-18	intron_retention	FALSE	canonical	3	5732	junction_1	1371.5	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCAAGTAGCCGAGGCCA	6349	False	NA	NA	False	NA	NA	NA	80128293	80129903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80128318_80128608_80128695_80129475
81049	chr17	-	4415	8	Intergenic	novelGene_251	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAATTTTTCCTTAAAG	3501	False	NA	NA	False	NA	NA	NA	46725664	46709812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_46711016_46713657_46713758_46716706_46717009_46719942_46720144_46720603_46720704_46721196_46721316_46721557_46723865_46725581
81050	chr17	+	2922	16	NIC	ENSMUSG00000024392.18	novel	3858	25	NA	NA	282	2	intron_retention	FALSE	canonical	3	443	junction_3	102.780975325635	1	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGCCTAGTAGTTTCGA	1437	False	NA	NA	False	NA	NA	NA	35360416	35366284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35360600_35360805_35361059_35361282_35361816_35361901_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
81051	chr15	-	4825	1	Antisense	novelGene_ENSMUSG00000001655.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	205	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGAATCTGTATTATTGA	NA	False	NA	NA	False	NA	NA	NA	102840089	102835264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_102835300_102840100
81052	chr15	-	4569	5	NNC	ENSMUSG00000051853.11	novel	4566	5	NA	NA	-19	212	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_4	270.614116409326	328	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATAGATCACTTTCTG	1777	False	NA	NA	False	NA	NA	NA	98661114	98634302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98661091
81053	chrX	+	2170	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	-7	5	-7	-5	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	1006	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATACAGTTTGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	71962155	72002115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
81054	chrX	+	5769	8	Antisense	novelGene_ENSMUSG00000031103.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCAACCACAAGAGCAACCT	NA	False	NA	NA	False	NA	NA	NA	47499926	47513213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_47504324_47505523_47505902_47506747_47506940_47507030_47507118_47507885_47508077_47509152_47509249_47509583_47509753_47512954
81055	chr9	+	5452	34	FSM	ENSMUSG00000032187.17	ENSMUST00000098948.10	6376	34	54	870	-41	-6	multi-exon	FALSE	non_canonical	0	0	junction_28	138.291543357457	466	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCACCACTGGCTCCCT	1291	False	NA	NA	False	NA	NA	NA	21527518	21614656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597308_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
81056	chr7	-	643	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	187	-1	-14	1	multi-exon	FALSE	canonical	3	3716	junction_2	16	3777	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGGCGTGTGTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	126224661	126222419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126222752_126224061_126224206_126224494
81057	chr18	+	4396	4	NIC	ENSMUSG00000034300.18	novel	4256	5	NA	NA	-196	2	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	12.657891697365	144	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCCATTTTCCCAAGCAA	4891	False	NA	NA	False	NA	NA	NA	34892412	34906793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_34892651_34895547_34895778_34901220_34902006_34903650
81058	chr7	+	3510	7	FSM	ENSMUSG00000078786.10_ENSMUSG00000080533.3	ENSMUST00000179391.8	1748	7	38	-1800	38	465	multi-exon	FALSE	canonical	2	9	junction_1	4.48763733927875	2049	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTCCCCCTAACTTCTCC	NA	False	NA	NA	False	NA	NA	NA	26895243	26905545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_26895533_26896330_26896792_26899978_26900048_26900444_26900570_26901832_26901963_26902051_26902123_26903180
81059	chr12	-	3667	3	ISM	ENSMUSG00000042507.16	ENSMUST00000110294.2	7156	13	39019	-84	236	-18	3prime_fragment	TRUE	canonical	3	106	junction_2	14	65	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTAAATAAGGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	84201770	84195967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_84199336_84199608_84199806_84201668
81060	chr9	-	5146	32	ISM	ENSMUSG00000034218.17	ENSMUST00000232179.2	9787	64	-50	47485	-50	34994	5prime_fragment	FALSE	canonical	3	19	junction_4	22.6952850288121	89	16	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGATCAGATGCTAGAT	NA	False	NA	NA	False	NA	NA	NA	53448090	53398152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_53398247_53399205_53399371_53399849_53400022_53401410_53401611_53402213_53402341_53403540_53403669_53404337_53404585_53405911_53406082_53407151_53407326_53408432_53408554_53410156_53410288_53410421_53410498_53411971_53412128_53412219_53412303_53414244_53414445_53415245_53415427_53417842_53417933_53419077_53419204_53421462_53421589_53423003_53423230_53424404_53424501_53426457_53426653_53427504_53427877_53429802_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
81061	chr3	-	1594	12	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-94	194	combination_of_known_junctions	FALSE	canonical	3	42	junction_4	248.823878102664	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTTTGTACTTTGATT	NA	False	NA	NA	False	NA	NA	NA	88857352	88830747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
81062	chr6	-	3856	14	ISM	ENSMUSG00000038456.10	ENSMUST00000036877.10	4468	19	34336	4967	34336	859	internal_fragment	FALSE	canonical	3	100	junction_13	14.6937172098754	55	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGTAGAAATACAAAATG	NA	False	NA	NA	False	NA	NA	NA	39500465	39444278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700_39465811_39469932_39470121_39471587_39471639_39472110_39472205_39473907_39474109_39483634_39483757_39485175_39485304_39499589
81063	chr9	-	8654	11	NNC	ENSMUSG00000063108.16	novel	11276	10	NA	NA	168	-2213	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	28.0207066292055	69	54	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGCATGTCATATTTTTT	NA	False	NA	NA	False	NA	NA	NA	20370955	20341957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20342390_20342455_20343291_20343415_20349957_20350817_20350901_20351487_20351572_20352624_20352752_20353475_20353562_20355554_20355664_20356189_20356282_20357041_20357194_20370842
81064	chr8	-	1664	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	257	4	3	-4	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGACTGAGTTTGGGCT	NA	False	NA	NA	False	NA	NA	NA	46664064	46659837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
81065	chr12	+	5453	27	Antisense	novelGene_ENSMUSG00000066440.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAGGTGACAAGTCCCAT	4246	False	NA	NA	False	NA	NA	NA	79307573	79343052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_79307673_79308347_79308601_79310548_79310726_79311085_79311207_79312460_79312567_79313131_79313329_79315132_79315874_79317609_79317718_79318843_79319062_79320068_79320234_79320332_79320449_79321623_79321889_79323015_79323221_79325183_79325336_79325865_79325931_79326811_79326904_79327130_79327738_79329573_79329777_79330809_79330974_79332032_79332124_79332257_79332416_79332974_79333102_79334148_79334653_79337646_79337738_79340599_79340679_79342250_79342547_79342999
81066	chr5	+	3835	16	NNC	ENSMUSG00000056602.14	novel	4379	20	NA	NA	2559	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	9.96304281945141	54	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGATGTTTGTATTT	NA	False	NA	NA	False	NA	NA	NA	150362953	150421209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_150363122_150369238_150369380_150372884_150373065_150374523_150374686_150377964_150378040_150381209_150381377_150389708_150389907_150390249_150390412_150393141_150393309_150394885_150395076_150401390_150401541_150402237_150402337_150404957_150405042_150414542_150414654_150419158_150419362_150419631
81067	chr9	-	3714	25	NNC	ENSMUSG00000004099.17	novel	5870	39	NA	NA	10365	-411	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	204.07928402135	1	166	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCATTGGCCTGGAGAT	NA	False	NA	NA	False	NA	NA	NA	20838120	20819227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825379_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101
81068	chr2	-	3679	6	FSM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	2	49	2	-49	multi-exon	FALSE	canonical	3	216	junction_2	18.4217263034711	179	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAAACAGAAATGGTGA	NA	False	NA	NA	False	NA	NA	NA	119985085	119919704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_119922166_119927443_119927609_119932500_119932914_119958072_119958171_119967379_119967557_119984720
81069	chr7	+	2063	11	NIC	ENSMUSG00000030435.17	novel	2183	12	NA	NA	-33	0	intron_retention	FALSE	canonical	3	28	junction_2	528.922527408315	19	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATGGATCCTCATCTG	2	True	NA	NA	False	NA	NA	NA	5065210	5082931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_5065336_5069401_5069538_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
81070	chr17	-	3877	11	NNC	ENSMUSG00000060475.14	novel	2060	8	NA	NA	0	-2	intron_retention	TRUE	non_canonical	0	0	junction_1	259.893516656341	5	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTGTTTGTTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	13213056	13185687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13186458_13186548_13186939_13188291_13188447_13192596_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13211195_13211254_13211648_13212000_13212949
81071	chr14	-	1951	11	Antisense	novelGene_ENSMUSG00002074958.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	855	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCACCGCCCCCTTT	1584	False	NA	NA	False	NA	NA	NA	21498803	21102638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21102767_21142432_21142510_21153887_21153942_21219867_21219942_21284895_21285072_21290528_21290640_21368080_21368251_21419137_21419173_21431568_21431684_21473568_21473656_21497879
81072	chr18	-	4925	4	FSM	ENSMUSG00000036941.3	ENSMUST00000041138.3	4971	4	1	45	1	-45	multi-exon	FALSE	canonical	3	22	junction_1	4.32049379893857	70	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAACATCAGAGGCACTC	NA	False	NA	NA	False	NA	NA	NA	73887549	73868153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_73872372_73875407_73875873_73880237_73880403_73887472
81073	chr18	-	985	2	Intergenic	novelGene_4492	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTAGACAACCCCTAACA	NA	False	NA	NA	False	NA	NA	NA	6669230	6662931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_6663827_6669140
81074	chr14	-	966	5	NIC	ENSMUSG00000013701.14	novel	682	6	NA	NA	3	-25	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1863.25003354354	20	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGTCATAATTCCAACA	NA	False	NA	NA	False	NA	NA	NA	31923852	31902143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_31902628_31911100_31911212_31913298_31913358_31920925_31920985_31923599
81075	chr2	-	6691	8	Fusion	ENSMUSG00000083111.2_ENSMUSG00000078867.10_ENSMUSG00000078865.9	novel	1348	4	NA	NA	5	150539	intron_retention	TRUE	non_canonical	0	0	junction_1	454.418129848154	33	110	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTAAACCTGGGGCCTGA	2353	False	NA	NA	False	NA	NA	NA	177269987	176594769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_176595065_176746419_176746441_177079402_177079492_177261859_177262087_177263226_177263288_177263479_177265425_177265735_177266497_177266695
81076	chr7	-	2093	15	FSM	ENSMUSG00000030720.17	ENSMUST00000032962.11	2386	15	-15	308	-15	-308	multi-exon	FALSE	canonical	3	116	junction_11	19.7815880173912	240	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTTTTACAATAATTACA	NA	False	NA	NA	False	NA	NA	NA	126182434	126170879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171
81077	chr9	+	3010	5	Antisense	novelGene_ENSMUSG00000025894.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGACCAGAGTTTCTCAGAA	NA	False	NA	NA	False	NA	NA	NA	4294797	4309801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_4296838_4299295_4299369_4302468_4302628_4308729_4308919_4309252
81078	chr1	+	4533	1	Intergenic	novelGene_393	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	62	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTAAGTGGTCCTGTTC	201	False	NA	NA	False	NA	NA	NA	82819861	82824394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_82819900_82824400
81079	chr19	-	5431	26	Antisense	novelGene_ENSMUSG00000089151.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	54	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGCAATTGGGTCAGCA	NA	False	NA	NA	False	NA	NA	NA	34948267	34902098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_34902172_34906259_34906343_34906422_34906542_34907081_34907224_34908958_34909193_34912306_34912529_34913020_34913136_34914174_34914249_34914337_34914484_34914711_34914872_34915650_34915939_34917185_34917328_34917492_34917632_34918732_34918841_34919905_34919941_34924981_34925129_34927141_34928380_34928891_34929028_34930268_34930389_34932109_34932171_34933348_34933474_34934813_34934942_34936811_34936971_34943445_34943624_34945515_34945625_34947317
81080	chr11	+	3291	10	FSM	ENSMUSG00000020305.14	ENSMUST00000020551.13	3228	10	-94	31	-94	-31	multi-exon	FALSE	canonical	3	71	junction_7	7.49979423586054	275	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCCAAATGTATTATAAAAC	NA	False	NA	NA	False	NA	NA	NA	30904300	31052673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_30904570_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
81082	chr12	-	1829	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	217	4664	103	-83	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACATTCTTCCTCTGTT	8913	False	NA	NA	False	NA	NA	NA	87434912	87356495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
81083	chr12	+	1838	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	-106	10	-18	-10	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	75	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTCTTTTACACAAGCGT	NA	False	NA	NA	False	NA	NA	NA	105976468	106041658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
81084	chr8	-	1963	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	3	-21	3	14	multi-exon	TRUE	canonical	3	1223	junction_2	41.2946727799119	1925	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCTATGTGATTTGATAAA	NA	False	NA	NA	False	NA	NA	NA	23747034	23731347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
81085	chrX	-	2215	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	-302	-257	-291	257	multi-exon	FALSE	canonical	3	233	junction_4	23.6231995198694	1083	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAACCTAGCTACTGTCT	NA	False	NA	NA	False	NA	NA	NA	8118936	8106401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
81086	chr11	-	2320	8	Antisense	novelGene_ENSMUSG00000018572.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	221	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAGGCGGCTTCGACGAA	4706	False	NA	NA	False	NA	NA	NA	69890835	69882467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_69882628_69883189_69883267_69883404_69883524_69885279_69885513_69888420_69888453_69888569_69888663_69889124_69889956_69890060
81087	chr4	-	4411	24	FSM	ENSMUSG00000028207.19	ENSMUST00000078139.13	6694	24	78	2205	2	-2205	multi-exon	TRUE	canonical	0	0	junction_21	108.084473020543	51	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCCTCGCTCTTACTTG	6	True	NA	NA	False	NA	NA	NA	9669084	9451283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
81088	chr2	+	4620	18	FSM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	41	3	37	-3	multi-exon	FALSE	canonical	3	65	junction_14	16.8134482341515	179	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATTTGGTCCAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	119505589	119565885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119505762_119522596_119522708_119531598_119531747_119535919_119536125_119541445_119541561_119542489_119542602_119550646_119550783_119551555_119551734_119555305_119555389_119557197_119557286_119557373_119557482_119558018_119558097_119558875_119558998_119559159_119559218_119560374_119560453_119561135_119561232_119562884_119562997_119563265
81089	chr12	-	3968	2	NNC	ENSMUSG00000112980.2	novel	2941	2	NA	NA	16	1082	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	0	139	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACCAATACAAGCCAAAAC	NA	False	NA	NA	False	NA	NA	NA	116368814	116364484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_116368264_116368625
81091	chr11	+	2197	6	Antisense	novelGene_ENSMUSG00000011254.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAATGGACGGGCCCCA	8600	False	NA	NA	False	NA	NA	NA	45837707	45846302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_45839154_45841020_45841130_45842368_45842461_45843563_45843735_45844884_45845058_45846096
81092	chr18	-	2552	16	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1749.20346824872	2	82	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649586	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633577_64633628_64633721_64634373_64634506_64634810_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
81093	chr9	-	3603	22	NNC	ENSMUSG00000057969.16	novel	3410	21	NA	NA	0	104	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	21.1531506474313	130	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATGTATTAATTCACTGAA	4340	False	NA	NA	False	NA	NA	NA	107486419	107475311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482614_107482787_107483748_107483854_107483952_107484134_107484232_107484292_107486319
81094	chr6	-	5537	3	Antisense	novelGene_ENSMUSG00000042460.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	120	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTCTGTAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	7875689	7863908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_7864140_7866373_7867042_7871051
81095	chr11	+	1220	4	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	96	-17540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	496.860364913747	64	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTATTTATTTAGCTT	9527	False	NA	NA	False	NA	NA	NA	88861173	88864240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861306_88861723_88861851_88862193_88862314_88863399
81096	chr15	+	7142	26	NNC	ENSMUSG00000023026.17	novel	4320	33	NA	NA	5204	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.7520351316956	43	52	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTGATTATGTTTAATT	2200	False	NA	NA	False	NA	NA	NA	100065811	100117347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_100065841_100067147_100067213_100069000_100069095_100069483_100069604_100071097_100071213_100072307_100072448_100073081_100073219_100076322_100076404_100079189_100079318_100080887_100081003_100084021_100084224_100087912_100088023_100088136_100088218_100088867_100088992_100091720_100091843_100093671_100093784_100096821_100096932_100097340_100097472_100100068_100100238_100101012_100101184_100102963_100103026_100104277_100104336_100105638_100105714_100107459_100107638_100109864_100109989_100113058
81097	chr11	+	7007	7	FSM	ENSMUSG00000018846.9	ENSMUST00000018990.8	7376	7	351	18	351	-18	multi-exon	FALSE	canonical	3	60	junction_4	14.5191444498481	105	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATCTCTTTACTACATG	NA	False	NA	NA	False	NA	NA	NA	35660661	35682094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_35660775_35666912_35667266_35668393_35668648_35669402_35669580_35672410_35672535_35674274_35674401_35676234
81098	chr1	-	5816	38	Intergenic	novelGene_374	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	14	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCGACGGATTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	60351404	60274451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_60274718_60275526_60275662_60276254_60276374_60277728_60278032_60281694_60281782_60283950_60284048_60286777_60286942_60287519_60287654_60290191_60290353_60290461_60290565_60292509_60292666_60294050_60294205_60296576_60296747_60297806_60297896_60299389_60299951_60300566_60300740_60303431_60303592_60304041_60304175_60306922_60307224_60307541_60307685_60309423_60309589_60311291_60311415_60316281_60316411_60317071_60317220_60317824_60317958_60318855_60318958_60320403_60320501_60320982_60321113_60323145_60323282_60326468_60326600_60329072_60329181_60330988_60331109_60332023_60332121_60335034_60335153_60344431_60344521_60349359_60349471_60350083_60350257_60351307
81099	chr1	+	3708	5	FSM	ENSMUSG00000026502.14	ENSMUST00000027783.14	8802	5	384	4710	69	1690	multi-exon	FALSE	canonical	3	163	junction_4	12.7573508221731	131	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAATGTTTTATAGTTC	NA	False	NA	NA	False	NA	NA	NA	178015481	178080157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_178015524_178065477_178065551_178070177_178070272_178071906_178072049_178076800
81100	chrX	-	5355	6	FSM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-292	-3693	7	128	multi-exon	FALSE	canonical	3	34	junction_4	11.6687617166519	42	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGACAATAGTGACTATTGA	NA	False	NA	NA	False	NA	NA	NA	35909041	35871838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35900125_35900228_35908702
81101	chr4	+	2740	4	Antisense	novelGene_ENSMUSG00000028906.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGGTCTAAGTCCCCATT	NA	False	NA	NA	False	NA	NA	NA	131650759	131657074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_131653249_131653819_131653922_131655804_131655886_131657006
81102	chr1	+	6588	37	NIC	ENSMUSG00000026131.21	novel	4539	33	NA	NA	47	-3548	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	4.90739867224939	26	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACGTCATCTTCAACACAG	NA	False	NA	NA	False	NA	NA	NA	34045009	34228796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_34045090_34045271_34045480_34125322_34125385_34153013_34153104_34155198_34155277_34156512_34156606_34174170_34174338_34191282_34191396_34191493_34191601_34193593_34193714_34195679_34195776_34195861_34195990_34199700_34199795_34200084_34200240_34202089_34202553_34202706_34202836_34202977_34203056_34203156_34203319_34203407_34203513_34204138_34204235_34205260_34205387_34206019_34206173_34206356_34206512_34206691_34206819_34206903_34207088_34208244_34208403_34208830_34209010_34209440_34209580_34210196_34210391_34211263_34211427_34212082_34212167_34213195_34213304_34213777_34213877_34223096_34223226_34225042_34225132_34225899_34226033_34227052
81103	chr17	+	1268	4	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	3280	junction_1	3644.78589525122	109	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6237	False	NA	NA	False	NA	NA	NA	24939083	24940899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24939107_24939246_24940277_24940596_24940689_24940776
81104	chr4	+	4184	8	ISM	ENSMUSG00000028560.12	ENSMUST00000091358.11	3527	9	1535	0	1450	0	3prime_fragment	FALSE	canonical	3	279	junction_1	97.7656506600329	335	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGATTTTTTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	98813650	98823780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_98814912_98816470_98816592_98817100_98817206_98817930_98818092_98819096_98819786_98820422_98820594_98821060_98821263_98822306
81105	chr10	-	1486	9	NIC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-6	-2	combination_of_known_splicesites	FALSE	canonical	1	85	junction_7	1769.02471364874	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTCTATGAGTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	90959890	90952655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90958068_90958194_90959419_90959569_90959777
81106	chr19	-	2497	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	906.677411759046	2	117	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGGTCTCCAGTGACTTTC	3767	False	NA	NA	False	NA	NA	NA	7017331	6998068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012527_7012841_7013074_7017247
81107	chr2	+	6272	16	NNC	ENSMUSG00000026883.18	novel	6219	15	NA	NA	-11344	0	intron_retention	FALSE	canonical	3	14	junction_1	70.1929404490857	156	50	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGACTTGCCTTTCTTCA	4442	False	NA	NA	False	NA	NA	NA	35500648	35621006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_35500706_35533899_35534004_35551503_35551638_35597659_35597814_35598825_35598925_35599829_35600385_35602877_35603023_35603117_35603263_35605280_35605518_35607082_35607285_35608771_35608951_35609864_35610754_35611272_35611426_35613040_35613235_35617437_35617526_35618069
81108	chr12	+	3733	2	FSM	ENSMUSG00000033454.7	ENSMUST00000042779.4	12190	2	254	8203	254	-8203	multi-exon	FALSE	canonical	3	110	junction_1	0	104	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTTTAATGTGAATTAC	NA	False	NA	NA	False	NA	NA	NA	76417293	76435521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_76417505_76431999
81109	chr3	-	5157	11	NNC	ENSMUSG00000096935.6	novel	987	3	NA	NA	5624	28958	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	144	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCTCCGACGGGAAACAG	NA	False	NA	NA	False	NA	NA	NA	88079375	88049904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88049979_88062981_88063167_88063625_88063831_88065338_88065478_88066427_88066637_88066839_88066899_88068496_88068687_88070262_88070393_88074819_88075042_88075344_88075650_88075936
81110	chr9	-	3020	19	NNC	ENSMUSG00000032030.17	novel	3585	19	NA	NA	-6	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	124.76733903105	2	69	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGGTATACGTACATT	NA	False	NA	NA	False	NA	NA	NA	53578378	53528317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534143_53534975_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545280_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
81111	chrX	-	3940	3	Antisense	novelGene_ENSMUSG00000067860.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	68	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAATGTCCTTGGACTGAT	NA	False	NA	NA	False	NA	NA	NA	57081915	57076007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_57077595_57078718_57078884_57079727
81112	chr11	-	4066	6	FSM	ENSMUSG00000041920.15	ENSMUST00000070872.13	2354	6	159	-1871	64	0	multi-exon	FALSE	canonical	3	14	junction_5	8.5463442476886	79	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTGATGTTCTTCTGTA	3033	False	NA	NA	False	NA	NA	NA	109363961	109341680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109363763
81113	chr5	-	1111	5	NNC	ENSMUSG00000032959.13	novel	779	5	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1352.16576276727	6	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTATTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	117425647	117420715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117421128_117421216_117421531_117423785_117423887_117424199_117424310_117425473
81114	chr12	+	766	1	Antisense	novelGene_ENSMUSG00000043483.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTTGGTTCCGTGATCTC	NA	False	NA	NA	False	NA	NA	NA	96889055	96889821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_96889100_96889800
81115	chr11	+	3112	9	ISM	ENSMUSG00000018411.18	ENSMUST00000100347.11	1362	12	57970	-1620	7173	1404	3prime_fragment	FALSE	canonical	3	18	junction_1	202.144750117335	174	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCATTAAGTCCCCATG	NA	False	NA	NA	False	NA	NA	NA	104180379	104220665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_104180821_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
81116	chr4	+	4501	9	NIC	ENSMUSG00000028683.15	novel	1555	12	NA	NA	11	-2	intron_retention	FALSE	canonical	2	9	junction_4	219.739476426062	8	97	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTGTAGGTGTGGCTCA	NA	False	NA	NA	False	NA	NA	NA	116876615	116944040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116915960_116916051_116922537_116926019_116927835_116927985_116938754_116938859_116943885
81117	chr8	-	2294	6	FSM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	2	-743	2	743	multi-exon	FALSE	canonical	3	129	junction_5	9.8264947972306	404	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGTATAGTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	108129836	108114113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479_108119645_108129697
81118	chr7	+	2343	5	NIC	ENSMUSG00000019737.15	novel	1006	7	NA	NA	51	-5	intron_retention	FALSE	canonical	3	156	junction_2	33.5335652742144	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCAAGAGATGTCTGAGA	NA	False	NA	NA	False	NA	NA	NA	30014391	30018460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30014512_30014686_30014826_30015654_30017468_30018097_30018157_30018248
81119	chr7	-	4133	5	NNC	ENSMUSG00000108043.3	novel	556	3	NA	NA	-13958	-779	intron_retention	TRUE	non_canonical	0	0	junction_1	6.06217782649107	33	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGAACCACGGCTTGT	NA	False	NA	NA	False	NA	NA	NA	6994377	6980079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_6980470_6984229_6984353_6987989_6989194_6991876_6992746_6992830
81120	chr8	+	900	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	83	517	0	6	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	56162	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85696322	85700946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
81121	chr2	+	3078	6	ISM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	49	5983	49	-5983	intron_retention	FALSE	canonical	3	1002	junction_3	80.4174110500954	5	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAGTATTTAAAATATGC	NA	False	NA	NA	False	NA	NA	NA	153583242	153609247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866
81122	chr19	+	2482	8	NIC	ENSMUSG00000024785.8	novel	1803	9	NA	NA	40	212	intron_retention	FALSE	canonical	3	369	junction_1	17.8885438199983	1198	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACAGGTCCTTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	29078814	29121541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120541
81123	chr17	+	2243	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-5	-62	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	295.656895742345	2	57	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGCCAAGGGCTGCGGA	NA	False	NA	NA	False	NA	NA	NA	32255392	32279485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32256442_32256548_32264902_32264986_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
81124	chr9	-	3102	2	ISM	ENSMUSG00000074476.7	ENSMUST00000217382.2	1696	3	786	97	786	-1	3prime_fragment	FALSE	canonical	3	2355	junction_1	0	5	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGCGTTCATTGATTTA	NA	False	NA	NA	False	NA	NA	NA	21670792	21667400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_21668691_21668980
81125	chr11	-	981	5	NNC	ENSMUSG00000078812.11	novel	1409	6	NA	NA	-943	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9289.90614524711	3	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCCAACTCAGTTGTT	8410	False	NA	NA	False	NA	NA	NA	69810073	69807547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808482_69808716_69808848_69809976
81126	chr13	-	2539	12	NIC	ENSMUSG00000021461.18	novel	2288	14	NA	NA	-5	-5	intron_retention	FALSE	canonical	1	5	junction_11	34.1096917954438	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTATATTCAGACCTTC	NA	False	NA	NA	False	NA	NA	NA	63579564	63459573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63579263
81127	chr16	-	4549	5	NIC	ENSMUSG00000044626.14	novel	3923	10	NA	NA	193	-465	intron_retention	FALSE	canonical	0	0	junction_2	83.0466736239327	7	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATAGCGTGTGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	21795022	21773031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_21774928_21777530_21777705_21784703_21784800_21786734_21786903_21792807
81128	chr1	+	3062	4	NNC	ENSMUSG00000044835.16	novel	523	5	NA	NA	17801	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	46.8354092066628	7	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTACAGAATTTTATGTTA	637	False	NA	NA	False	NA	NA	NA	160988137	160998060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_160988332_160990836_160990976_160995281_160995541_160995590
81129	chr14	-	4700	20	FSM	ENSMUSG00000068015.9	ENSMUST00000088970.7	4694	20	-6	0	4	0	multi-exon	FALSE	canonical	3	34	junction_4	23.7891243570067	76	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTTGGATTGATTGACT	573	False	NA	NA	False	NA	NA	NA	75185312	74992114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032350_75032432_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
81130	chr7	-	2059	9	NNC	ENSMUSG00000040488.19	novel	5377	33	NA	NA	-558	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_8	184.947289788199	507	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCGGCCTCTGCCTGCC	NA	False	NA	NA	False	NA	NA	NA	27010661	27004566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27010313
81131	chr15	+	2289	12	NIC	ENSMUSG00000022550.19	novel	2026	15	NA	NA	0	-20	intron_retention	FALSE	canonical	3	114	junction_7	18.8074189687065	27	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGACCACACACTCGTCT	3103	False	NA	NA	False	NA	NA	NA	76460558	76479988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477832_76477918_76478252_76478352_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
81132	chr16	+	3731	3	ISM	ENSMUSG00000022897.16	ENSMUST00000023614.5	5754	12	114296	470	16307	-20	3prime_fragment	FALSE	canonical	3	142	junction_1	17	121	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGGAGGTTTAACAGATAA	NA	False	NA	NA	False	NA	NA	NA	94486061	94495906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_94486201_94487337_94487463_94492439
81133	chr4	-	2138	5	ISM	ENSMUSG00000028568.17	ENSMUST00000102739.2	723	6	1346	-1639	-34	-898	3prime_fragment	FALSE	canonical	3	1008	junction_1	71.1705697602598	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTGTCTTTTCTATTTC	NA	False	NA	NA	False	NA	NA	NA	108687782	108672389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714
81134	chr8	+	3312	11	NNC	ENSMUSG00000015568.17	novel	1900	11	NA	NA	-5	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	38.5031167569588	126	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACTAAGTCATCATTTT	NA	False	NA	NA	False	NA	NA	NA	69333201	69359581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157_69357727_69358465
81135	chr10	-	3113	8	NIC	ENSMUSG00000006342.16	novel	2275	13	NA	NA	3436	-29	intron_retention	FALSE	canonical	3	52	junction_5	14.321384039831	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAGAACACAAGCTCAT	NA	False	NA	NA	False	NA	NA	NA	75476378	75472570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75475335_75475428_75475573_75475667_75475937_75476022
81137	chr6	-	1762	11	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	2772.1553636115	1	77	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTGTGCACTGCTACA	NA	False	NA	NA	False	NA	NA	NA	51446874	51437914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51446650
81138	chr16	+	3957	4	NNC	ENSMUSG00000075229.12	novel	1073	5	NA	NA	1436	1	intron_retention	FALSE	non_canonical	0	0	junction_2	433.331538457821	13	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTCTGTGTACATATTT	NA	False	NA	NA	False	NA	NA	NA	35903080	35912477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_35903187_35905386_35906151_35907517_35910331_35912203
81139	chr11	-	3564	16	NNC	ENSMUSG00000020451.18	novel	3514	16	NA	NA	32	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	69.7068145879583	62	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGATGACAGAGAGTGCCAA	NA	False	NA	NA	False	NA	NA	NA	3359142	3294257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300533_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
81140	chr10	+	3133	3	FSM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	-14	4	-14	-4	multi-exon	FALSE	canonical	3	147	junction_1	1	222	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATACATGTATATATGGT	NA	False	NA	NA	False	NA	NA	NA	121575827	121588766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_121576116_121581235_121581522_121586207
81141	chr16	+	4166	1	Antisense	novelGene_ENSMUSG00000005580.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCACTGAGCTGTTGCA	NA	False	NA	NA	False	NA	NA	NA	4102751	4106917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_4102800_4106900
81142	chr17	+	3104	14	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	2	36	intron_retention	FALSE	canonical	0	0	junction_9	186.83255167894	4	58	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTTTTAATTACTTTACA	NA	False	NA	NA	False	NA	NA	NA	32255399	32279583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272940_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
81143	chr2	-	3642	20	FSM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	38	6	-8	-5	multi-exon	FALSE	canonical	3	65	junction_16	14.3132737727671	96	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACCTTTGGCTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	132420115	132371007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414175_132419987
81144	chr2	-	6488	18	ISM	ENSMUSG00000026923.16	ENSMUST00000028288.5	9488	34	30121	17	-3203	-17	3prime_fragment	TRUE	canonical	3	30	junction_10	9.40109689543567	75	57	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCACATTTTGCTAAACTT	5837	False	NA	NA	False	NA	NA	NA	26363713	26347931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_26350989_26352159_26352258_26352353_26352502_26353721_26354018_26354817_26354984_26355074_26355163_26355361_26355579_26356478_26356628_26357640_26358043_26358243_26358816_26359616_26359730_26359812_26360071_26360285_26360419_26360833_26361019_26361163_26361318_26362082_26362285_26362795_26363025_26363692
81145	chr15	+	3725	12	Antisense	novelGene_ENSMUSG00000099083.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCGAGAAGTGGGGGCGAG	NA	False	NA	NA	False	NA	NA	NA	102440526	102533919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_102442877_102446621_102446727_102449174_102449375_102454841_102454997_102455591_102455703_102456207_102456308_102459838_102459996_102462217_102462359_102465896_102466016_102471750_102471846_102502106_102502176_102533796
81146	chr10	+	3382	7	NIC	ENSMUSG00000019817.19	novel	3897	8	NA	NA	-7607	-370	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	53.8918670425634	1	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTATTCCCCAACGTGT	5279	False	NA	NA	False	NA	NA	NA	12981601	13006343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_12981638_12984566_12984653_12988262_12988295_12992439_12992526_13000599_13000913_13002885_13004741_13005369
81147	chr3	-	3318	3	NNC	ENSMUSG00000038526.15	novel	1709	11	NA	NA	5921	3800	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	67	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAACAACCCCCGGTCGCT	NA	False	NA	NA	False	NA	NA	NA	95805139	95801279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95802304_95802454_95803155_95803545
81148	chr2	+	2603	7	Antisense	novelGene_ENSMUSG00000051396.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCATCATTTGCAACCA	NA	False	NA	NA	False	NA	NA	NA	3496816	3512255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_3497755_3499056_3500347_3502083_3502178_3503532_3503635_3503771_3503825_3512053_3512133_3512208
81150	chr15	+	2360	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	10	0	10	0	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	3101	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAGTGAGGCACCTGCC	642	False	NA	NA	False	NA	NA	NA	78915083	78922553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
81151	chr5	-	3587	17	NNC	ENSMUSG00000042508.17	novel	3926	18	NA	NA	3	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	111.170758295516	2	153	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAACAGAAATAAAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	9211668	9168904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9170139_9170349_9170495_9171084_9171459_9171777_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180519_9182455_9182614_9186065_9186143_9187125_9187232_9190385_9190481_9200375_9200493_9201797_9201919_9202876_9202994_9211613
81152	chr19	-	2267	1	Intergenic	novelGene_1210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	211	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGTAACACAGGTTTAACT	NA	False	NA	NA	False	NA	NA	NA	15891842	15889575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_15889600_15891800
81153	chr11	-	1679	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	9	-172	9	172	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	2132	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGCTGTGGTATAGTTG	NA	False	NA	NA	False	NA	NA	NA	101308432	101297492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
81154	chr5	+	4330	15	FSM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	13	503	13	-503	multi-exon	TRUE	canonical	3	94	junction_7	18.2382195693885	91	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCCTTACTCTCACCTCC	NA	False	NA	NA	False	NA	NA	NA	110801329	110807859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110801655_110801743_110801878_110802333_110802485_110802734_110802881_110802957_110803030_110803172_110803280_110803430_110803540_110803625_110803772_110803905_110804099_110804196_110804313_110804390_110804508_110804681_110804784_110804953_110805018_110805116_110805252_110805446
81155	chr9	+	4672	16	ISM	ENSMUSG00000032536.13	ENSMUST00000238988.2	3353	17	66768	-1920	-2688	1	3prime_fragment	FALSE	canonical	3	114	junction_14	40.2999862145	126	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTTTTTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	121193345	121303985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289644_121298050_121298154_121301302
81156	chr12	+	3138	11	NNC	ENSMUSG00000021044.16	novel	2253	11	NA	NA	-9	-12	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	26.2937254872717	75	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCAAGGTTGCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	88327408	88428476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_88327554_88335104_88336141_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
81157	chr16	-	2698	11	NIC	ENSMUSG00000022983.17	novel	4175	20	NA	NA	-3065	-1	combination_of_known_junctions	TRUE	canonical	3	106	junction_9	50.9407498963256	83	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAAACGTTAATGTGTGC	5196	False	NA	NA	False	NA	NA	NA	90047169	90025845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_90027133_90039414_90039541_90039759_90039847_90039931_90040098_90041097_90041256_90042268_90042426_90044057_90044172_90044532_90044634_90045400_90045592_90046514_90046601_90046944
81158	chr13	-	900	5	Antisense	novelGene_ENSMUSG00000037851.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCGGACCCCTTTAACT	NA	False	NA	NA	False	NA	NA	NA	49887736	49882152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_49882239_49883488_49883629_49885773_49885967_49887132_49887381_49887503
81159	chr16	+	2041	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	33	6	-8	-6	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGACTTTGTTTTGTTTGG	1386	False	NA	NA	False	NA	NA	NA	20354260	20362800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
81160	chr12	+	4579	14	NIC	ENSMUSG00000035293.14	novel	6803	15	NA	NA	6	1223	combination_of_known_splicesites	FALSE	canonical	3	12	junction_10	42.4542914662973	3	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTATTTGAATTTATAT	NA	False	NA	NA	False	NA	NA	NA	51395076	51422083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51414557_51414740_51415828_51416002_51418342_51418534_51419212
81161	chr11	+	2483	8	NNC	ENSMUSG00000020349.5	novel	7102	7	NA	NA	164	3757	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	720.362607104426	726	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	51989671	52014276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_51989723_51989848_51989978_52003946_52004157_52008813_52008988_52009495_52009586_52009969_52010132_52011759_52011879_52012728
81162	chr12	-	4987	20	Genic_Genomic	ENSMUSG00002076948.1	novel	100	1	NA	NA	-10945	13534	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAACATGGTTCTAGGTA	NA	False	NA	NA	False	NA	NA	NA	113038003	113013424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_113013588_113014134_113014209_113014498_113014580_113015848_113015909_113020427_113020585_113023339_113023430_113023696_113023781_113024248_113024390_113024690_113024824_113025257_113025363_113025466_113025575_113026064_113026221_113026950_113027062_113027448_113027557_113031694_113031739_113032598_113032641_113032899_113033041_113033674_113033903_113034286_113034400_113035155
81164	chr8	-	2831	7	NNC	ENSMUSG00000031951.9	novel	2984	7	NA	NA	29	-4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	95.4585424848574	1	125	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACGTTTCCCTTGGCTTC	NA	False	NA	NA	False	NA	NA	NA	112660402	112638646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645497_112645589_112659991_112660162_112660259
81165	chr5	+	2820	5	NNC	ENSMUSG00000029195.11	novel	3540	5	NA	NA	23475	787	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	61.2147857955903	11	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGCCCAGTGTGGACTT	NA	False	NA	NA	False	NA	NA	NA	65529225	65542137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_65529554_65533022_65533292_65536270_65537415_65540651_65541708_65542114
81166	chr14	-	1554	9	NNC	ENSMUSG00000021953.15	novel	1881	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1077.25100806404	1	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTTTTTACTTAGGATT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746161
81167	chr4	+	6027	8	NIC	ENSMUSG00000028572.14	novel	5517	22	NA	NA	-3993	-2	intron_retention	FALSE	canonical	3	124	junction_6	12.9046740464414	101	82	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGCTGTGGTTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	95897536	95913648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_95897627_95897705_95897767_95901434_95901576_95903044_95905263_95905824_95905926_95907839_95907942_95909804_95909874_95910403
81168	chr4	+	5973	44	FSM	ENSMUSG00000061859.18	ENSMUST00000041284.10	7340	44	64	1303	0	-58	multi-exon	FALSE	canonical	1	2	junction_32	5.98203548240142	35	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTACTTATGCTAATTT	NA	False	NA	NA	False	NA	NA	NA	98284091	98606537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_98284162_98293615_98293672_98293771_98293939_98297391_98297587_98299263_98299404_98301240_98301437_98304867_98304997_98312512_98312732_98314249_98314350_98317171_98317264_98319994_98320137_98325566_98325708_98329290_98329380_98331987_98332045_98344366_98344502_98353270_98353433_98357709_98357842_98379774_98379985_98383261_98383376_98385110_98385519_98393918_98394043_98401835_98402011_98407167_98407240_98408979_98409158_98411627_98411739_98423746_98423825_98427195_98427296_98457175_98457373_98480169_98480262_98499304_98499378_98511839_98511927_98526927_98527000_98538604_98538723_98540640_98540796_98555812_98555897_98562430_98562625_98564409_98564558_98565477_98565565_98569350_98569460_98570280_98570319_98575569_98575693_98576362_98576468_98592231_98592339_98606145
81169	chr7	-	3601	7	NNC	ENSMUSG00000025484.10	novel	489	4	NA	NA	-6029	-1197	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGCACCGGGTGCTGG	NA	False	NA	49	True	NA	NA	NA	140443519	140437381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140437466_140437755_140437804_140437892_140438487_140438774_140438867_140439350_140439500_140440786_140440889_140440987
81170	chr14	+	4624	2	FSM	ENSMUSG00000021840.18	ENSMUST00000228058.2	840	2	-531	-3253	-531	3253	multi-exon	FALSE	canonical	3	7	junction_1	0	21	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAAGGCCAGTCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	47547873	47554868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_47548571_47550941
81171	chr6	-	10896	22	Intergenic	novelGene_4198	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	99	27	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCAAAAAGCACATGT	NA	False	NA	NA	False	NA	NA	NA	85781037	85576824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_85576949_85578176_85578370_85584450_85584573_85585965_85587514_85587798_85587917_85592227_85592388_85596413_85600182_85601563_85601695_85604896_85606696_85618299_85618530_85620138_85620264_85628240_85628398_85633373_85633516_85751383_85751470_85755979_85757131_85773106_85773227_85774370_85774576_85774854_85775097_85775591_85775746_85776438_85776504_85779958_85780058_85780880
81172	chrX	-	2375	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	7	-267	7	267	multi-exon	FALSE	canonical	3	493	junction_5	23.1352473386711	635	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATCTGACTTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	92875800	92807945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
81173	chr5	+	3474	12	FSM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	-61	0	-61	0	multi-exon	TRUE	canonical	3	18	junction_6	12.1383212585269	208	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCTGGCTTGAATTGG	8640	False	NA	NA	False	NA	NA	NA	127709264	127786438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
81175	chr10	+	7271	16	FSM	ENSMUSG00000040624.19	ENSMUST00000239159.2	4478	16	53	-2846	-32	0	multi-exon	FALSE	canonical	3	8	junction_1	7.74137512906389	61	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAATTTTCATTGAATTAA	NA	False	NA	NA	False	NA	NA	NA	3784931	3917298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_3785077_3822926_3823442_3853556_3853658_3869135_3869206_3880206_3880254_3883596_3883748_3887849_3887982_3890168_3890352_3890437_3890534_3890633_3890727_3895890_3895925_3897519_3897604_3899666_3899706_3902310_3902334_3906545_3908206_3913400
81176	chr7	-	2069	12	NNC	ENSMUSG00000059119.10	novel	2285	16	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	400.307691574724	2	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGAGATTGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	143102837	143067323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143072586_143072623_143074120_143074178_143077893_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143102778
81177	chr7	+	3691	6	NNC	ENSMUSG00000100490.2	novel	1290	3	NA	NA	-2021	1682	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	6.58483105326173	68	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATTGGGGGCTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	39136840	39149907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_39136985_39138848_39138976_39139461_39139541_39143154_39143248_39145691_39145802_39146769
81178	chr4	+	5731	1	Genic_Genomic	ENSMUSG00000028385.15	novel	NA	NA	NA	NA	14229	2	mono-exon	FALSE	NA	NA	NA	NA	NA	97	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGTGCTCATTTTTGTC	8215	False	NA	NA	False	NA	NA	NA	59899008	59904739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_59899000_59904700
81179	chr1	+	1893	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	2183	-162	-50	162	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	1778	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGAGGTTTTGTTGCTTGT	NA	False	NA	NA	False	NA	NA	NA	39026871	39036481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
81180	chr11	-	1836	4	FSM	ENSMUSG00000020415.17	ENSMUST00000117446.8	1674	4	-146	-16	-9	2	multi-exon	FALSE	canonical	3	9157	junction_2	511.130337802622	144	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCCCTGATTGGTATTT	NA	False	NA	NA	False	NA	NA	NA	43316954	43311074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_43312093_43313719_43313814_43315545_43315725_43316409
81181	chr10	-	2718	5	ISM	ENSMUSG00000019822.13	ENSMUST00000126833.8	4150	6	-18	1542	-8	-6	5prime_fragment	FALSE	canonical	3	171	junction_3	14.6180539060437	16	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACACACTCTAGTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	41366344	41363179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41365348_41365459
81182	chr10	-	5351	31	ISM	ENSMUSG00000034602.16	ENSMUST00000037557.9	5511	34	24328	-277	-18566	87	3prime_fragment	FALSE	canonical	3	100	junction_22	19.2109922237822	75	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTCTACTTCTGATTTG	NA	False	NA	NA	False	NA	NA	NA	122887602	122830976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_122831739_122835563_122835647_122838600_122838809_122841916_122842041_122842876_122842938_122844040_122844232_122845407_122845537_122846398_122846543_122849272_122849896_122850845_122851045_122852167_122852462_122853979_122854143_122856208_122856385_122858738_122858850_122859814_122859917_122861984_122862076_122862158_122862233_122862311_122862393_122862813_122862919_122865037_122865151_122866014_122866200_122866944_122867027_122868427_122868655_122870209_122870364_122871372_122871510_122871916_122872042_122874365_122874561_122878135_122878262_122878879_122878975_122882202_122882333_122887541
81183	chr10	-	2101	7	NIC	ENSMUSG00000039166.17	novel	2092	8	NA	NA	6419	-3	combination_of_known_junctions	FALSE	canonical	3	110	junction_5	10.4189997387252	47	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCTTTTCTTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	25165579	25044990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_25046301_25096508_25096657_25115523_25115637_25143205_25143367_25147402_25147540_25159790_25159940_25165496
81184	chr12	+	2843	1	Antisense	novelGene_ENSMUSG00000021276.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCGTCCAAGATGGCCT	2246	False	NA	NA	False	NA	NA	NA	110843275	110846118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110843300_110846100
81185	chrX	-	2463	1	Antisense	novelGene_ENSMUSG00000031060.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	59	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTTGGGGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	20508804	20506341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20506300_20508800
81186	chr10	+	5553	8	ISM	ENSMUSG00000019951.11	ENSMUST00000218776.2	4615	12	15868	-1459	471	-10	3prime_fragment	FALSE	canonical	3	122	junction_6	9.78336781043653	51	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCATTCAATATACTTTGT	NA	False	NA	NA	False	NA	NA	NA	89638929	89655723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_89639075_89640573_89642076_89642485_89642659_89644379_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
81187	chr11	-	1743	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	70	14	70	-14	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	3077	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGCAGTAACTGACCATT	NA	False	NA	NA	False	NA	NA	NA	120238847	120236530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
81188	chr3	+	1742	13	Antisense	novelGene_ENSMUSG00000053398.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGGGCAGGGTTCTCG	NA	False	NA	NA	False	NA	NA	NA	98220485	98247230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_98220773_98221482_98221724_98222383_98222423_98222458_98222514_98223725_98223855_98226947_98227088_98227960_98228110_98228527_98228672_98235396_98235462_98235604_98235662_98240552_98240617_98241822_98241974_98247009
81189	chr3	-	1250	10	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	551.356531376348	1	31	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGTAAAGAATTCTTAACT	NA	False	NA	NA	False	NA	NA	NA	98247240	98220508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220589_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
81190	chr8	-	726	2	Genic_Genomic	ENSMUSG00000101431.2	novel	1597	1	NA	NA	-93	149	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCAGGTGACAGCATATG	NA	False	NA	NA	False	NA	NA	NA	76439917	76438078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_76438281_76439393
81191	chr3	-	1685	12	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	66	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	781.772112807586	3	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGTAAAGAATTCTTAACT	NA	False	NA	NA	False	NA	NA	NA	98247240	98220508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220774_98221483_98221703_98222444_98222512_98223725_98223837_98226931_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240599_98241822_98241975_98247010
81192	chr8	-	1814	1	FSM	ENSMUSG00000101431.2	ENSMUST00000120430.2	1597	1	-92	-125	-92	125	mono-exon	FALSE	NA	NA	NA	NA	NA	1	89	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATTCTTAACTCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	76439916	76438102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_76438100_76439900
81193	chr3	-	1842	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	49	2	49	-2	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	2	71	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGTGTCTGTGTGATC	NA	False	NA	NA	False	NA	NA	NA	98247257	98220487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
81194	chr3	-	1735	11	NNC	ENSMUSG00000053398.12	novel	1893	12	NA	NA	103	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.299414470694	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCACATGGTGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	98247203	98220491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_98220808_98221532_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235692_98241822_98241975_98247010
81195	chr7	+	3331	22	NNC	ENSMUSG00000030880.15	novel	4194	21	NA	NA	40	-43	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_21	76.9953616413724	179	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATATTTAAAATCAAAATG	NA	False	NA	NA	False	NA	NA	NA	120517046	120546612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698_120545553_120546332
81196	chr6	-	6865	13	NNC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	10	-109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.8820681123589	2	146	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATAAAATAAAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	37419071	37304298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_37308180_37308277_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
81197	chr3	+	4235	23	NNC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	26	577	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	95.7286540520213	7	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCAAAACTATCATAAATT	NA	False	NA	NA	False	NA	NA	NA	63202894	63289621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275937_63275996_63276300_63276378_63287653
81198	chr8	-	4749	6	Antisense	novelGene_ENSMUSG00000050271.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	78	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGCAGCTGCGATCGCG	NA	False	NA	NA	False	NA	NA	NA	36614926	36561997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_36562139_36566719_36567140_36569707_36571504_36596155_36596314_36606503_36607265_36613453
81199	chr12	-	465	2	Antisense	novelGene_ENSMUSG00000109975.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCTAAAGGACAAATAACAG	NA	False	NA	NA	False	NA	NA	NA	21604746	21604011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21604106_21604375
81201	chr7	-	3462	3	FSM	ENSMUSG00000042797.10	ENSMUST00000206389.2	3737	3	237	38	-114	-38	multi-exon	FALSE	canonical	3	30	junction_1	4.5	227	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAATTTAACTCTTTC	NA	False	NA	NA	False	NA	NA	NA	97387259	97373250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_97375912_97378177_97378295_97386575
81204	chr8	-	3411	2	Genic_Genomic	ENSMUSG00000034424.6	novel	1443	5	NA	NA	78	-5803	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAAGGATTCCATCTAAG	NA	False	NA	NA	False	NA	NA	NA	117720198	117716377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_117717287_117717696
81205	chr17	-	2461	3	NIC	ENSMUSG00000024177.10	novel	926	6	NA	NA	1	-14	intron_retention	FALSE	canonical	3	319	junction_2	19.5	21	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTATGCTTAAAATGGAAA	NA	False	NA	NA	False	NA	NA	NA	26314458	26310727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26312935_26313110_26313245_26314338
81206	chr13	+	2463	6	Intergenic	novelGene_1420	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	49.4505813919311	1	87	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTTTTCCTGGGAAGCCG	NA	False	NA	NA	False	NA	NA	NA	65781770	65810491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65781809_65782072_65782115_65794023_65794151_65794350_65794412_65807849_65807993_65808439
81207	chr18	+	4716	35	NNC	ENSMUSG00000024421.17	novel	5551	38	NA	NA	72	-4925	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	20.3101386037567	4	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACATCGCAAGTCAATCT	NA	False	NA	NA	False	NA	NA	NA	12637327	12711145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12637453_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070
81208	chr13	-	2880	6	NNC	ENSMUSG00000094499.4	novel	3029	10	NA	NA	-2	288520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17.2348484182484	44	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGACTTCCGGTGGCCA	NA	False	NA	NA	False	NA	NA	NA	66549934	66210457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66212709_66213158_66213302_66384209_66384271_66384471_66384599_66390346_66390535_66549824
81209	chr5	-	6071	17	FSM	ENSMUSG00000029287.15	ENSMUST00000031224.15	6087	17	14	2	14	-2	multi-exon	FALSE	canonical	3	17	junction_8	3.80788655293195	45	30	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATGTCATATCTGGTC	291	False	NA	NA	False	NA	NA	NA	107437481	107254437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_107257624_107266284_107266393_107269225_107269274_107278326_107278445_107280598_107280896_107284784_107284944_107285395_107285537_107287634_107287788_107288249_107288579_107290222_107290413_107295891_107296040_107297655_107297825_107302117_107302302_107325670_107325809_107362758_107362944_107414059_107414217_107437120
81210	chr18	-	2675	12	Antisense	novelGene_ENSMUSG00000019143.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	273	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTCCCTGACCCGGAAGT	NA	False	NA	NA	False	NA	NA	NA	36924926	36916303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_36916545_36918614_36918694_36918919_36919042_36919163_36919260_36920554_36921058_36921216_36921316_36921627_36921723_36922208_36922336_36922417_36922661_36923184_36923302_36923519_36923669_36924122
81211	chr12	+	5885	39	NIC	ENSMUSG00000020640.11	novel	4977	38	NA	NA	167	-4	combination_of_known_junctions	TRUE	canonical	3	9	junction_1	16.9216255939665	58	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAATCCTTTCAAAGCTT	7183	False	NA	NA	False	NA	NA	NA	4642804	4763946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_4642932_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4747141_4747264_4750319_4750427_4751181_4751366_4756259_4756359_4756964_4757133_4757529_4757746_4758112_4758235_4758944_4759028_4761952_4762037_4762466_4762641_4763039
81212	chr7	-	6852	52	Intergenic	novelGene_3046	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	11	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGGACGGGGCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	134775376	134272384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_134272572_134326056_134326141_134331744_134331785_134335775_134335834_134339357_134339455_134342713_134342862_134345930_134346069_134346678_134346835_134348155_134348239_134348635_134348770_134355087_134355163_134358601_134358684_134362538_134362663_134365573_134365701_134366946_134367042_134367912_134367993_134373195_134373298_134374018_134374204_134379122_134379220_134384075_134384167_134384474_134384574_134390876_134391015_134406270_134406378_134449868_134449940_134453223_134453332_134475785_134475914_134477947_134478045_134592248_134592352_134600951_134601048_134678863_134678940_134683543_134683648_134693102_134693161_134700460_134700610_134710162_134710250_134710434_134710589_134715573_134715622_134717022_134717108_134720634_134720755_134734715_134734805_134735584_134735692_134739542_134739686_134739806_134739884_134742033_134742119_134745482_134745571_134747141_134747318_134748166_134748250_134753934_134754075_134760188_134760335_134765005_134765205_134768827_134768983_134770091_134770243_134774174
81213	chr1	+	6414	13	Antisense	novelGene_ENSMUSG00000048874.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	221	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTATCATAGGGGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	30842136	30870638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_30845028_30845252_30845445_30847802_30847891_30849760_30849911_30850851_30851047_30852095_30852233_30853039_30853173_30855548_30855666_30859161_30859319_30859763_30859905_30860207_30860395_30863289_30863599_30868921
81215	chr5	-	1973	6	FSM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	93	-6	9	6	multi-exon	FALSE	canonical	3	325	junction_5	43.6055042397173	556	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCATCCCGTGGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	138980699	138961762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
81216	chr13	-	3723	9	NNC	ENSMUSG00000021464.16	novel	3730	9	NA	NA	115218	-2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	49.0406400345672	132	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGTGTATTATCTCTG	NA	False	NA	NA	False	NA	NA	NA	53314476	53263354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_53265705_53267083_53267287_53271204_53271417_53272726_53273042_53275699_53275828_53284952_53284984_53285785_53286074_53300669_53300748_53314358
81217	chr5	+	3413	27	Genic_Genomic	ENSMUSG00000106969.2	novel	506	4	NA	NA	-98334	-1359	multi-exon	FALSE	non_canonical	0	0	junction_1	0	141	53	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGGGCTGCGCGGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	134386509	134485525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_134386751_134387841_134387976_134389094_134389130_134389807_134389999_134390520_134390603_134391366_134391403_134392035_134392227_134392753_134392836_134405723_134405928_134408786_134408875_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414694_134417290_134417380_134417984_134418069_134418529_134418564_134419673_134419791_134424452_134424655_134430964_134431040_134432580_134432675_134433508_134433820_134437979_134438163_134439805_134439966_134443993_134444133_134445907_134446034_134485360
81218	chr11	-	1950	5	ISM	ENSMUSG00000014195.17	ENSMUST00000239494.2	1120	9	5157	8	-542	-2	3prime_fragment	FALSE	canonical	3	2240	junction_1	220.143703066883	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAGAATAAAATGTT	-5	True	NA	NA	False	NA	NA	NA	100477104	100473672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807
81219	chr5	+	2411	4	ISM	ENSMUSG00000040557.15	ENSMUST00000136815.3	750	7	-404	-182	-5	182	intron_retention	FALSE	canonical	3	103	junction_2	4.54606056566195	5	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGGGGGAGACCCAAAT	3424	False	NA	NA	False	NA	NA	NA	134961233	134966310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_134961702_134962326_134962456_134963142_134963279_134964632
81220	chr16	+	1162	4	ISM	ENSMUSG00000022761.13	ENSMUST00000231307.2	2214	11	2380	344	610	-2	intron_retention	FALSE	canonical	2	99	junction_3	8.60232526704263	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACCTCTCTGTCAGGAGC	4612	False	NA	NA	False	NA	NA	NA	17341161	17343851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_17341298_17341959_17342087_17342171_17342322_17343102
81222	chr3	-	2883	3	FSM	ENSMUSG00000027860.16	ENSMUST00000160226.8	617	3	-691	-1575	-691	1575	multi-exon	FALSE	canonical	3	188	junction_2	64	116	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATTTGATAAAAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	102074980	102068926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_102070850_102072670_102072804_102074153
81223	chr18	-	3509	6	Genic_Genomic	ENSMUSG00000118234.2	novel	5267	1	NA	NA	-62694	37369	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTAGCTCAGTGACTG	NA	False	NA	NA	False	NA	NA	NA	65820691	65715361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_65715469_65715966_65716076_65756052_65758404_65815963_65816079_65818593_65818758_65820028
81224	chr18	+	4667	5	ISM	ENSMUSG00000042439.14	ENSMUST00000169679.8	5003	6	375	48	288	-41	3prime_fragment	FALSE	canonical	3	18	junction_2	32.1976319004985	1	227	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCAACCCATTTCACATG	NA	False	NA	NA	False	NA	NA	NA	65715971	65821963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_65716078_65756054_65758406_65815965_65816079_65818595_65818762_65820032
81226	chr16	+	2038	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	-46	-65	-46	-12	multi-exon	FALSE	canonical	3	939	junction_3	70.1998909640038	1179	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGAATTGCAGGTGGCT	NA	False	NA	NA	False	NA	NA	NA	22676548	22691203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
81227	chr6	-	3974	18	Antisense	novelGene_ENSMUSG00000042810.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	120	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGACTACACTTCCCAGAG	2927	False	NA	NA	False	NA	NA	NA	48393827	48372556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_48372820_48379815_48379944_48380310_48380430_48380922_48381073_48382165_48382324_48383230_48383364_48383765_48383909_48384601_48384751_48385451_48385668_48386102_48386281_48386658_48386827_48388573_48388727_48389205_48389360_48390010_48390207_48390296_48390436_48390987_48391082_48391419_48391530_48392504
81228	chr7	-	1427	13	ISM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	28543	-2	-1314	1	3prime_fragment	FALSE	canonical	3	1332	junction_2	74.864831900937	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143125250	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220
81229	chr13	-	2542	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	-12	1850	-12	1382	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	2262	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAAGTATCTCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	36090354	36079304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
81230	chr7	+	2740	4	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	285	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	448.306442811908	1	156	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATGCTTTCTTTCTCTCC	556	False	NA	NA	False	NA	NA	NA	3339384	3347873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3339444_3341727_3341816_3345237_3346688_3346730
81231	chr8	+	3289	6	FSM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	206	-2685	-2	2622	multi-exon	TRUE	canonical	3	86	junction_5	44.6183818621877	446	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAGGCTCAGGATTGTT	8819	False	NA	NA	False	NA	NA	NA	70592354	70602591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
81232	chr4	-	4565	5	FSM	ENSMUSG00000028980.15	ENSMUST00000030830.4	4745	5	177	3	177	-3	multi-exon	FALSE	canonical	3	55	junction_3	7.96868872525461	72	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACATTGAGTTGATAAACA	NA	False	NA	NA	False	NA	NA	NA	150093303	150063934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_150067379_150068359_150068630_150078925_150079044_150080201_150080839_150093207
81233	chr15	-	2048	9	ISM	ENSMUSG00000022336.4	ENSMUST00000228892.2	2633	12	7867	-119	-3428	3	3prime_fragment	FALSE	canonical	3	2495	junction_1	106.862572376862	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGCTTGAATTTCC	736	False	NA	NA	False	NA	NA	NA	43135311	43113450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274
81234	chr2	+	1050	1	Genic_Genomic	ENSMUSG00000026969.4	novel	NA	NA	NA	NA	806	933	mono-exon	FALSE	NA	NA	NA	NA	NA	538	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTCCCCCCACCCAGGG	NA	False	NA	NA	False	NA	NA	NA	25112175	25113225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_25112200_25113200
81235	chr16	+	4761	10	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-275	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	1688.95111727463	7700	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	84570735	84622816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84617348_84617458_84618147_84618191_84619674
81236	chr8	+	1538	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	52	22	28	-22	multi-exon	FALSE	canonical	3	308	junction_1	1434.62463383284	292	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTGTGAGTTCAAGTTT	NA	False	NA	NA	False	NA	NA	NA	85696267	85701441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
81237	chr5	-	1230	1	Intergenic	novelGene_785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAATTACACAGGTAATGA	NA	False	NA	NA	False	NA	NA	NA	104904740	104903510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_104903500_104904700
81238	chr12	-	2812	11	Antisense	novelGene_ENSMUSG00000021258.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	656	21	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTTCGGCCCGGAGGCG	9671	False	NA	NA	False	NA	NA	NA	108169617	108145807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_108146152_108152627_108152887_108153439_108153520_108155323_108155454_108159928_108160035_108160598_108160656_108161322_108161500_108161843_108162109_108162595_108162630_108165565_108165641_108168332
81239	chr10	-	1842	11	NNC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-55	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	673.526606749874	1	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATACATTTTAATG	NA	False	NA	NA	False	NA	NA	NA	93725531	93696791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707345_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
81240	chr17	+	2309	9	FSM	ENSMUSG00000025736.16	ENSMUST00000133595.9	2268	9	-51	10	-51	-9	multi-exon	FALSE	canonical	3	70	junction_1	9.19238815542512	307	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGCTCACTCTCCTGGT	NA	False	NA	103	True	NA	NA	NA	26047789	26050807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
81241	chr13	+	1944	9	Antisense	novelGene_ENSMUSG00000021713.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATCTGTTCTGTATACA	NA	False	NA	NA	False	NA	NA	NA	104341699	104359689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_104342156_104343606_104343793_104344506_104344585_104346119_104346304_104350033_104350222_104353594_104353788_104356544_104356993_104359345_104359466_104359598
81242	chr8	+	2478	13	NNC	ENSMUSG00000031584.17	novel	347	5	NA	NA	-426	-1	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	492.898083617023	190	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTGTCAGTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	34142124	34188190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_34142473_34159180_34159208_34159920_34160010_34161550_34161621_34164114_34164263_34170290_34170346_34171492_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
81243	chr11	+	1997	1	Genic_Genomic	ENSMUSG00000018449.13	novel	NA	NA	NA	NA	1203	106	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGCGAATGGAGGTGTAAC	NA	False	NA	NA	False	NA	NA	NA	70866768	70868765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_70866800_70868800
81244	chr10	+	2956	3	FSM	ENSMUSG00000053684.9	ENSMUST00000136432.2	2968	3	-8	20	-7	-7	multi-exon	FALSE	canonical	3	27	junction_1	61	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATATATACATGTATATAT	NA	False	NA	NA	False	NA	NA	NA	121575834	121588763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_121576116_121581402_121581522_121586207
81246	chr5	+	4493	14	ISM	ENSMUSG00000034462.10	ENSMUST00000086831.4	5219	15	7383	0	7263	0	3prime_fragment	FALSE	canonical	3	58	junction_13	9.50614874201564	85	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGGTGTTAAAAACACGT	5285	False	NA	NA	False	NA	NA	NA	104614698	104653685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_104614863_104624908_104625043_104626656_104626908_104628015_104628241_104630890_104631120_104634512_104634681_104637098_104637281_104638509_104638631_104642758_104642858_104646306_104646429_104646623_104646742_104647035_104647200_104650157_104650306_104651317
81247	chr8	-	2317	9	NIC	ENSMUSG00000004994.13	novel	2119	10	NA	NA	3	28	intron_retention	FALSE	canonical	3	143	junction_8	33.542650089103	473	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTGTGTTTGCATGTT	NA	False	NA	NA	False	NA	NA	NA	84996993	84984395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
81248	chr5	-	2036	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	-2	-486	-2	486	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	3	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCAAGAATATAATGTACC	NA	False	NA	NA	False	NA	NA	NA	130284373	130274085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
81249	chr11	+	3641	19	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	-81	0	intron_retention	FALSE	non_canonical	0	0	junction_1	37.4551583749006	490	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	NA	False	NA	NA	NA	96943070	96959730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96943192_96943311_96943482_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490
81250	chr17	+	2628	10	NNC	ENSMUSG00000116895.2	novel	1684	12	NA	NA	68	-1219	intron_retention	FALSE	non_canonical	0	0	junction_7	84.5635125472032	100	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATCTCCTTCTCCCCAC	NA	False	NA	NA	False	NA	NA	NA	15230505	15241492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237774_15237899_15238462_15239227_15240224_15241420
81251	chr13	+	1743	7	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-25	2305	multi-exon	FALSE	non_canonical	0	0	junction_1	49.8887651569859	2	41	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	66261268	66328219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261403_66267450_66267578_66267777_66267839_66325249_66325393_66325525_66325613_66325840_66326525_66327712
81252	chr1	+	1783	10	FSM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	-6	390	-6	-5	multi-exon	FALSE	canonical	3	185	junction_1	10.3363197596069	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACAGTTGTCTGTCTTC	6731	False	NA	NA	False	NA	NA	NA	171238874	171246320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
81253	chr1	-	1149	5	NNC	ENSMUSG00000060743.13	novel	724	5	NA	NA	-14	130	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_2	1268.46055811759	80	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGCTTCTGGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	180641126	180630131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180630771_180631082_180631197_180637681_180637836_180639363_180639515_180641035
81254	chr4	-	3476	3	Intergenic	novelGene_2033	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCACTGTAATCAACCTC	NA	False	NA	NA	False	NA	NA	NA	146334234	146262997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146263169_146327361_146328263_146331830
81255	chr11	-	2453	10	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	-5	2373	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	10.8320512061813	42	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATACTGGACTCGGGTGG	2885	False	NA	NA	False	NA	NA	NA	95805722	95754395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95755693_95759192_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
81256	chr3	-	6097	8	Antisense	novelGene_ENSMUSG00000027677.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGAATAGAGCTAATTCTT	NA	False	NA	NA	False	NA	NA	NA	33866301	33855465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_33855540_33857007_33857091_33857221_33857350_33857594_33857753_33858146_33858220_33858568_33858690_33858788_33858912_33860964
81257	chr11	+	5256	18	NNC	ENSMUSG00000018395.20	novel	3161	18	NA	NA	3	2260	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	25.820514362377	177	57	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCCTAATGTCTTTTAAA	940	False	NA	NA	False	NA	NA	NA	53458226	53495054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484190_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837_53492694_53492838
81258	chr17	+	2147	3	FSM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	222	751	222	7	multi-exon	FALSE	canonical	3	244	junction_1	49	627	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACTGCTACTTATTTTC	967	False	NA	NA	False	NA	NA	NA	73143669	73157439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_73143787_73153273_73153439_73155574
81259	chr5	+	2424	4	NNC	ENSMUSG00000029178.15	novel	4016	3	NA	NA	-5411	-761	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	319.679005670793	266	35	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACATATATATTATATT	NA	False	NA	NA	False	NA	NA	NA	64955319	64982011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221
81260	chr15	+	4687	16	NNC	ENSMUSG00000022286.17	novel	717	7	NA	NA	-21193	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	24.3507700083591	159	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCTCTAGTACTTTCTG	245	False	NA	NA	False	NA	NA	NA	37264643	37363813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_37264758_37270833_37271030_37274886_37274955_37279577_37279972_37287485_37287542_37288431_37288589_37291804_37291917_37309908_37310004_37328473_37328633_37335945_37336034_37336449_37336590_37338016_37338049_37344899_37344992_37348012_37348099_37358613_37358679_37360980
81261	chr12	-	2423	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	-21	-336	-20	336	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	340	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACTATCAAAAATTAAAAC	NA	False	NA	NA	False	NA	NA	NA	73333504	73326448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
81262	chr10	+	2627	6	Antisense	novelGene_ENSMUSG00000019795.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCCGCGGCACGCATGC	NA	False	NA	NA	False	NA	NA	NA	7513514	7539065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_7515037_7515384_7515895_7516458_7516578_7520086_7520229_7524812_7524920_7538838
81263	chr19	+	3083	10	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-16	0	intron_retention	FALSE	canonical	3	72	junction_1	10.4136662345422	2	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4296	False	NA	NA	False	NA	NA	NA	5074125	5081992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
81264	chr4	-	4424	19	NNC	ENSMUSG00000066151.13	novel	2337	19	NA	NA	-50	4	intron_retention	FALSE	non_canonical	0	0	junction_17	22.9755640455219	51	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTAGTGCTCCAATTGGT	6866	False	NA	NA	False	NA	NA	NA	62278835	62236858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264382_62270669_62270783_62278606
81265	chr8	+	2286	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	-33	-485	-23	481	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	759	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGAAGTCTAAGCCAAAT	NA	False	NA	NA	False	NA	NA	NA	117648445	117668727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
81266	chr5	-	4078	19	FSM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	402	0	41	0	multi-exon	FALSE	canonical	3	391	junction_6	33.7942668086734	203	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTGTGCTGGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	50215946	50117297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_50118857_50118989_50119086_50121032_50121179_50128031_50128156_50129292_50129418_50136284_50136494_50136701_50136916_50144815_50145020_50147466_50147629_50155556_50155713_50156474_50156677_50159196_50159362_50164090_50164305_50166677_50166839_50168832_50168905_50170734_50170807_50174168_50174241_50183048_50183121_50215893
81267	chr1	+	2952	12	FSM	ENSMUSG00000026027.14	ENSMUST00000027185.11	2960	12	7	1	7	-1	multi-exon	FALSE	canonical	3	56	junction_7	10.2964328252857	213	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGGTTTTCTTCATCTA	NA	False	NA	NA	False	NA	NA	NA	59012687	59034873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031809_59031915_59032051_59032297_59032719_59032763_59033451
81268	chr13	+	1965	8	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-27	2303	multi-exon	FALSE	non_canonical	0	0	junction_4	91.1415136488531	412	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTGGAAATAAAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	66261266	66328217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66269077_66325249_66325393_66325840_66326525_66327361_66327532_66327595
81269	chr13	+	2932	10	NIC	ENSMUSG00000021611.10	novel	4313	16	NA	NA	1196	1651	intron_retention	FALSE	canonical	3	21	junction_1	5.29150262212918	1	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGACTTGCAGGTGAGC	3419	False	NA	NA	False	NA	NA	NA	73776325	73794412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_73776794_73782270_73783720_73784475_73784656_73785324_73785484_73787274_73787377_73788104_73788191_73790094_73790209_73790483_73790556_73792367_73792557_73794299
81270	chr7	+	5062	18	NIC	ENSMUSG00000005442.14	novel	6096	20	NA	NA	553	-2	intron_retention	TRUE	canonical	3	38	junction_7	27.1077562669246	152	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACACGTGTGGGCTGCTGG	2903	False	NA	NA	False	NA	NA	NA	24984647	24993565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_24984739_24984834_24984965_24985058_24985242_24985322_24985489_24986231_24986435_24986525_24986752_24987174_24987279_24987498_24988727_24988812_24989001_24989995_24990118_24990223_24990391_24990476_24990768_24990874_24991195_24991488_24991740_24991838_24991994_24992074_24992207_24992380_24992513_24992592
81271	chr3	+	3051	6	NNC	ENSMUSG00000027963.15	novel	3000	5	NA	NA	6	-11	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	25.9044397739075	121	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATAACTGAGCGGGTGCT	23	False	NA	NA	False	NA	NA	NA	115801139	115822655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_115801532_115804270_115804346_115804485_115804577_115817655_115818084_115818973_115819045_115820661
81272	chr7	+	2189	10	NIC	ENSMUSG00000006024.14	novel	2517	11	NA	NA	78	-23	combination_of_known_splicesites	TRUE	canonical	3	18	junction_3	386.334180167161	28	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAAAACGAGAGGCCAT	NA	False	NA	NA	False	NA	NA	NA	15832640	15851877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_15832700_15841477_15841558_15842975_15843093_15847036_15847115_15847274_15847331_15847400_15847486_15848045_15848151_15849127_15849197_15849524_15849576_15850388
81273	chr10	+	5206	6	NNC	ENSMUSG00000060733.14	novel	600	3	NA	NA	14149	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	137.28423070404	147	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACGTCTTCCGTTGATTA	NA	False	NA	NA	False	NA	NA	NA	71197821	71221711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_71197913_71199279_71199366_71201838_71201936_71208537_71208711_71212534_71212617_71217034
81274	chr9	-	406	1	Antisense	novelGene_ENSMUSG00000062933.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGCTTTAGGATGAAGT	9539	False	NA	NA	False	NA	NA	NA	96778395	96777989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_96778000_96778400
81276	chr3	-	1746	9	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	50	1	intron_retention	FALSE	canonical	3	9	junction_8	319.779391729674	54	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTTGTGTATATAGC	6232	False	NA	NA	False	NA	NA	NA	153618514	153612928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618254
81277	chr2	-	4009	4	ISM	ENSMUSG00000027365.15	ENSMUST00000155675.8	1123	9	3047	-1252	-1732	-4	intron_retention	FALSE	canonical	3	330	junction_1	23.6830928911088	329	89	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTTACAGATGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	126641498	126633494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030
81278	chr2	-	4769	7	ISM	ENSMUSG00000057133.15	ENSMUST00000039782.14	10515	37	143398	21	-828	-21	3prime_fragment	FALSE	canonical	3	30	junction_6	9.46337971105226	78	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGGTCTTGATCCTGG	9127	False	NA	NA	False	NA	NA	NA	160807544	160788918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_160792108_160798002_160798123_160798955_160799148_160801896_160802350_160803193_160803401_160803782_160803935_160807088
81279	chr12	-	3669	9	NIC	ENSMUSG00000021098.15	novel	2051	18	NA	NA	-1448	914	intron_retention	FALSE	canonical	3	8	junction_8	9.13697843928725	81	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATTTTGATGCATAATTA	NA	False	NA	NA	False	NA	NA	NA	72954695	72926968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_72928199_72931996_72932055_72936481_72936621_72939577_72939754_72945260_72945308_72945483_72945570_72949186_72949264_72949989_72950109_72952958
81280	chrX	+	1410	4	FSM	ENSMUSG00000015217.12	ENSMUST00000132145.2	847	4	307	-870	307	-33	multi-exon	FALSE	canonical	3	753	junction_3	86.723058576649	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAACTGTTCTGTATT	NA	False	NA	NA	False	NA	NA	NA	70601695	70604249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_70601814_70602038_70602179_70602703_70602879_70603272
81281	chr3	-	524	1	FSM	ENSMUSG00000104623.2	ENSMUST00000197077.2	477	1	14	-61	14	61	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	57625696	57625172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_57625200_57625700
81283	chr9	+	3189	8	NNC	ENSMUSG00000032333.7	novel	2236	8	NA	NA	58	1534	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	132.748803753402	196	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAATATATTTTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	58160532	58171337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928_58170488_58170730
81284	chr1	-	3984	9	ISM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	4194	1350	4150	-1350	3prime_fragment	FALSE	canonical	3	165	junction_2	12.9301005409857	8	110	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTTAGTAATTTATACAG	NA	False	NA	NA	False	NA	NA	NA	106683263	106649538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173
81285	chr1	+	3927	21	FSM	ENSMUSG00000026585.14	ENSMUST00000077642.12	4012	21	80	5	80	-5	multi-exon	FALSE	canonical	3	16	junction_19	53.7530231707948	239	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGTCCAACTCTCATTT	NA	False	NA	NA	False	NA	NA	NA	163607231	163744673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163739640_163739707_163743293
81286	chr9	-	2261	7	Antisense	novelGene_ENSMUSG00000032249.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCGTAGAGGCGGGACCT	NA	False	NA	NA	False	NA	NA	NA	62286493	62248629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_62248837_62279001_62279150_62279341_62279464_62280760_62280958_62281933_62282032_62284579_62284645_62285069
81287	chr4	+	2852	4	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-66	-5814	multi-exon	FALSE	canonical	3	31	junction_2	125.619354488957	56	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAAAACTTTTGTAAATG	NA	False	NA	NA	False	NA	NA	NA	147056366	147139437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962
81288	chr9	-	3051	19	FSM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	386	148	-53	-148	multi-exon	FALSE	canonical	3	311	junction_17	44.7831882587348	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAATCCTGATTTTCAA	NA	False	NA	NA	False	NA	NA	NA	53578425	53528471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
81289	chr16	-	5733	1	Antisense	novelGene_ENSMUSG00000046516.11_AS_novelGene_ENSMUSG00000095464.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGGGGACAGGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	38173103	38167370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_38167400_38173100
81290	chr8	-	3273	2	ISM	ENSMUSG00000040459.12	ENSMUST00000207070.2	525	3	-1552	-773	-1552	0	intron_retention	FALSE	canonical	3	955	junction_1	0	250	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTAAGCAATTTTTAT	NA	False	NA	-54	True	NA	NA	NA	8733815	8716575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_8717417_8731383
81291	chr2	-	3991	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	83	-5	-48	5	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	1389	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTGGTTATGGTAC	NA	False	NA	NA	False	NA	NA	NA	103627366	103595357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
81292	chr10	+	981	7	NIC	ENSMUSG00000061315.15	novel	885	8	NA	NA	10	-28	intron_retention	FALSE	canonical	3	9741	junction_1	904.902695812588	34	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAAGTTGTGGCTTCTTGT	4982	False	NA	NA	False	NA	NA	NA	127871513	127884474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883997_127884113_127884237_127884361
81293	chr8	-	4906	10	ISM	ENSMUSG00000046707.10	ENSMUST00000212214.2	6779	11	1105	1435	-89	1328	3prime_fragment	FALSE	canonical	3	275	junction_8	20.1720990540626	170	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGTTGACAATTCCTG	NA	False	NA	NA	False	NA	NA	NA	96214303	96176036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192
81294	chr7	+	6927	42	ISM	ENSMUSG00000030451.17	ENSMUST00000164095.3	15261	93	114872	-31	7531	-6	3prime_fragment	FALSE	canonical	3	23	junction_7	14.9457874188848	74	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAACTGTAGGCTGAATT	8624	False	NA	NA	False	NA	NA	NA	55815008	55881542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_55815026_55818573_55818765_55820133_55820240_55820322_55820415_55827572_55827749_55830816_55830929_55832152_55832235_55832327_55832472_55833689_55833781_55834053_55834232_55834373_55834456_55834540_55834713_55835582_55835728_55838308_55838535_55839551_55839724_55840914_55841102_55841541_55841683_55843957_55844150_55846803_55846958_55851848_55851957_55853523_55853656_55854133_55854293_55854381_55854501_55855059_55855186_55855615_55855772_55856269_55856386_55856475_55856675_55857439_55857655_55862568_55862747_55863189_55863352_55865100_55865193_55865594_55865735_55869452_55869641_55870224_55870423_55872657_55872742_55876266_55876409_55876585_55876781_55877549_55877663_55878176_55878368_55879031_55879138_55879408_55879622_55880607
81295	chr11	+	2057	8	ISM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	5249	11	5249	-11	3prime_fragment	FALSE	canonical	3	513	junction_6	42.333467244954	11	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGATATGGATGACCATAA	NA	False	NA	NA	False	NA	NA	NA	78224489	78233597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
81296	chr1	-	2591	4	FSM	ENSMUSG00000058407.13	ENSMUST00000194747.2	2605	4	11	3	11	-3	multi-exon	FALSE	canonical	3	675	junction_1	99.432836069826	34	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCATTCACATGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	38036294	38026479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_38026861_38029283_38029539_38033072_38034923_38036189
81297	chr16	+	2822	8	NIC	ENSMUSG00000022841.16	novel	2080	11	NA	NA	-14	-39	intron_retention	FALSE	canonical	3	142	junction_4	932.467978330755	2	116	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTGCTGAGATTAAAGT	1410	False	NA	NA	False	NA	NA	NA	20354284	20362767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20360617_20360705_20360842_20360946_20361501_20362060
81298	chr17	+	3161	16	Antisense	novelGene_ENSMUSG00000025733.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	158	46	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCGCTCAGGCCCCCGCA	NA	False	NA	NA	False	NA	NA	NA	26057432	26063499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_26058471_26058662_26058866_26058958_26059087_26059234_26059312_26059414_26059543_26059624_26059726_26059809_26059950_26060028_26060113_26060335_26060459_26060532_26061066_26061153_26061393_26062080_26062134_26062913_26062961_26063062_26063143_26063226_26063288_26063373
81299	chr2	+	2685	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	0	-605	0	605	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	1561	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGTGGAAAATTTGTCA	NA	False	NA	NA	False	NA	NA	NA	28358077	28361795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
81302	chr10	+	3753	1	NIC	ENSMUSG00000020224.16	novel	1664	3	NA	NA	615	-11	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACAAAAAACCCAGAAACT	NA	False	NA	NA	False	NA	NA	NA	120063705	120067458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_120063700_120067500
81303	chr4	-	6219	10	FSM	ENSMUSG00000078515.5	ENSMUST00000177592.2	3539	10	280	-2960	280	2960	multi-exon	TRUE	canonical	3	149	junction_7	26.8842971285984	121	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGGCAAAGTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	141450450	141407913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141412943_141416580_141416643_141419565_141419756_141422717_141422822_141426040_141426170_141430422_141430551_141433242_141433370_141435530_141435768_141440707_141440838_141450367
81304	chr9	-	5895	11	NNC	ENSMUSG00000032119.6	novel	5333	10	NA	NA	51	-7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	19.6834956245073	279	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCAGACTTGAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	44216891	44203743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216078_44216244_44216431
81305	chr2	-	2806	2	NNC	ENSMUSG00000078870.10	novel	685	3	NA	NA	10395	1061	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	25	47	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCTGCACAGAACTTAAT	NA	False	NA	NA	False	NA	NA	NA	176877159	176874184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176875027_176875195
81306	chr2	-	2575	2	Antisense	novelGene_ENSMUSG00000082901.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	15	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGAAGCAATCTCACTGA	2062	False	NA	NA	False	NA	NA	NA	177576154	177459639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_177459698_177573637
81307	chr8	-	6103	11	ISM	ENSMUSG00000061410.7	ENSMUST00000046386.5	7444	13	34224	9	9933	-9	3prime_fragment	FALSE	canonical	3	23	junction_1	7.11688133946323	80	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTCAACATGTTCACCA	NA	False	NA	NA	False	NA	NA	NA	122345416	122325450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_122329071_122330546_122332008_122332088_122332230_122332925_122333057_122333615_122333708_122335128_122335412_122335818_122335874_122335959_122336055_122336855_122336966_122338064_122338137_122345373
81309	chr13	-	5171	32	ISM	ENSMUSG00000021676.11	ENSMUST00000068603.8	5847	36	145485	5	17887	-5	3prime_fragment	FALSE	canonical	3	39	junction_26	10.7567949146866	67	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAATGTGGTAGAGTTTT	9492	False	NA	NA	False	NA	NA	NA	95883018	95763686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_95764629_95765454_95765564_95766496_95766635_95768531_95768693_95771971_95772185_95774225_95774314_95783269_95783412_95784685_95784789_95794310_95794444_95796625_95796859_95797506_95797592_95798094_95798236_95800570_95800796_95802100_95802265_95804875_95805026_95807736_95807946_95809492_95809563_95810192_95810265_95811821_95811906_95818660_95818832_95819417_95819561_95821361_95821530_95826208_95826300_95844385_95844550_95852564_95852690_95858020_95858182_95861053_95861218_95865970_95866059_95867787_95867967_95869398_95869513_95870391_95870460_95882945
81311	chr5	-	2802	7	FSM	ENSMUSG00000025747.13	ENSMUST00000154751.6	2723	7	-7	-72	-4	72	multi-exon	FALSE	canonical	3	21	junction_5	685.356030752549	12	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCAGTGATGCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	30278619	30265989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30274831_30276706_30278358
81312	chr17	-	2074	8	NIC	ENSMUSG00000060475.14	novel	2060	8	NA	NA	0	96	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	239.599069876563	336	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCACATTAAAACAGTCTA	NA	False	NA	NA	False	NA	NA	NA	13213056	13185586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_13186939_13188291_13188447_13194182_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13212949
81313	chr5	-	3284	16	FSM	ENSMUSG00000028944.15	ENSMUST00000030784.14	3331	16	40	7	40	-3	multi-exon	FALSE	canonical	3	8	junction_12	63.6806616381038	186	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAAAGTTTTTATGTATA	NA	False	NA	NA	False	NA	NA	NA	25305600	25067748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320_25113391_25152421_25152637_25226789_25227070_25233462_25233535_25305008
81314	chr19	+	1500	7	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	20568	15	-708	-15	3prime_fragment	FALSE	canonical	3	3022	junction_2	202.716550878314	5	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAGAATCTAAGAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	10603258	10607168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
81315	chr17	+	831	1	Genic_Genomic	ENSMUSG00000057863.7	novel	NA	NA	NA	NA	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	869	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	56920415	56921246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_56920400_56921200
81316	chr17	+	2191	2	NNC	ENSMUSG00000057863.7	novel	383	4	NA	NA	738	2174	intron_retention	FALSE	non_canonical	0	0	junction_1	0	12	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGGCATGGCCCCCACG	NA	False	NA	-91	True	NA	NA	NA	56921153	56923417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56921803_56921875
81317	chr15	+	1750	3	FSM	ENSMUSG00000034259.9	ENSMUST00000059045.8	1796	3	44	2	-24	2	multi-exon	FALSE	canonical	0	0	junction_1	330.5	1522	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGGACTAATGTCTTCT	923	False	NA	NA	False	NA	NA	NA	76211640	76214875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76211864_76213229_76213437_76213555
81318	chr11	-	3488	1	FSM	ENSMUSG00000081297.2	ENSMUST00000120089.2	596	1	-1697	-1195	-1697	1195	mono-exon	FALSE	NA	NA	NA	NA	NA	61	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTGTTGTAGTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	52371627	52368139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_52368100_52371600
81319	chr11	+	4801	6	Antisense	novelGene_ENSMUSG00000083061.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAAGATAACTTATTCAC	NA	False	NA	NA	False	NA	NA	NA	49562338	49574113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_49566232_49568125_49568334_49570750_49570979_49571967_49572123_49572865_49573020_49573950
81320	chr8	+	3485	9	FSM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	24	55	-9	-55	multi-exon	FALSE	canonical	3	202	junction_7	44.2492937796752	140	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGTGTGCATTTGTTC	NA	False	NA	NA	False	NA	NA	NA	92040176	92395012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
81321	chr10	-	5234	30	NNC	ENSMUSG00000020198.9	novel	4805	31	NA	NA	36	0	intron_retention	FALSE	canonical	0	0	junction_28	78.3556785831804	124	66	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTCCCCAT	9244	False	NA	NA	False	NA	NA	NA	80578062	80542789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_80543818_80544291_80544372_80544580_80544703_80545034_80545121_80545233_80545323_80545600_80545791_80546253_80546302_80546522_80546667_80547945_80548042_80548429_80548502_80548598_80548765_80549390_80549465_80549806_80549995_80550080_80550157_80550941_80551014_80551704_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568680_80568781_80577729
81322	chr13	-	4146	14	NIC	ENSMUSG00000021156.18	novel	4003	14	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	45.6649749899023	72	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTCTTGTCAGTAAGCTG	NA	False	NA	NA	False	NA	NA	NA	9815376	9734871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9770808_9770969_9785367_9785503_9815090
81324	chr11	+	1926	8	ISM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	440	2	-1	1	3prime_fragment	FALSE	canonical	3	2674	junction_7	130.54063406793	29	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	NA	False	NA	NA	NA	9068546	9086168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
81325	chr10	-	1221	6	Antisense	novelGene_ENSMUSG00000035722.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTCTTGGCTAGGCCCC	9561	False	NA	NA	False	NA	NA	NA	79840329	79837696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_79838046_79838340_79838562_79838662_79838882_79838959_79839156_79839620_79839740_79840212
81326	chr11	-	1757	7	FSM	ENSMUSG00000034341.18	ENSMUST00000106444.4	1012	7	-66	-679	-66	0	multi-exon	FALSE	canonical	3	34	junction_3	412.44046708451	13	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	115977887	115969398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115972057_115972151_115973101_115973238_115974664_115974774_115977692
81327	chr16	+	3504	11	NNC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	-3	-1	intron_retention	FALSE	canonical	0	0	junction_10	46.2948161244863	240	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGGTTTTACTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	10010807	10060914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10055343_10055404_10058424
81328	chr2	-	4431	23	NIC	ENSMUSG00000026754.17	novel	4869	23	NA	NA	20	-26	intron_retention	FALSE	canonical	3	23	junction_1	8.80974291610907	44	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGATTAAAGCTCTTCAAG	NA	False	NA	NA	False	NA	NA	NA	38955533	38906540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937608_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
81329	chr18	-	2662	5	NNC	ENSMUSG00000024592.16	novel	2400	5	NA	NA	-6	4	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	38.9486841883009	159	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGGTAGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	57108432	57088900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_57091260_57091594_57091652_57095472_57095591_57106455_57106557_57108405
81330	chr16	-	3017	4	FSM	ENSMUSG00000047434.15	ENSMUST00000055389.9	3470	4	445	8	445	-8	multi-exon	FALSE	canonical	3	135	junction_2	21.3124898175277	115	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCAAAGCTACAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	30899805	30773969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_30776553_30826531_30826665_30869449_30869598_30899652
81331	chr7	-	5523	27	ISM	ENSMUSG00000038371.16	ENSMUST00000164759.8	7090	40	186534	7	13905	2	3prime_fragment	TRUE	canonical	3	83	junction_23	14.944918591815	36	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGAACCTCTGAGTGC	NA	False	NA	NA	False	NA	NA	NA	110027595	109907226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913272_109914179_109914414_109916102_109916231_109919879_109920007_109928967_109929154_109929816_109929919_109934498_109934676_109939096_109939282_109948061_109948203_109950799_109950997_109961246_109961446_109963731_109963878_109964928_109965105_109966387_109966516_109968598_109968795_109970790_109970865_109971702_109971876_109974778_109975036_109977170_109977342_109998502_109998572_110019998_110020149_110021651_110021762_110027394
81332	chr4	-	2290	5	Antisense	novelGene_ENSMUSG00000028488.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATGAGTCCTTGACCTC	NA	False	NA	NA	False	NA	NA	NA	85307614	85295694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_85295763_85297484_85297648_85299641_85299744_85304024_85304155_85305787
81333	chrX	+	2544	1	Antisense	novelGene_ENSMUSG00000083327.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	91	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGGCAGGCGACCGACT	NA	False	NA	NA	False	NA	NA	NA	103389349	103391893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_103389300_103391900
81334	chr7	+	449	2	Antisense	novelGene_ENSMUSG00000025492.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCATCTCAGCCACCTCAT	NA	False	NA	NA	False	NA	NA	NA	140589501	140590459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_140589792_140590300
81335	chr11	+	405	3	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGTATTGAGGAGGAGT	2177	False	NA	NA	False	NA	NA	NA	120469990	120470567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120470257_120470341_120470408_120470494
81336	chr11	-	1105	3	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	1824	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1656	6	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGGGATTGTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	120470382	120468938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469544_120469797_120470257_120470341
81339	chr11	-	1237	1	ISM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	2272	12	2028	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTCTGGGATTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	120470178	120468941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120468900_120470200
81340	chr13	+	1344	4	Intergenic	novelGene_1435	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	14.7044966667418	91	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGACAGGCGGTTTTTCA	NA	False	NA	NA	False	NA	NA	NA	66351568	66358542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66351667_66356409_66356521_66357359_66357497_66357544
81341	chr13	+	2679	5	Intergenic	novelGene_1421	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	49.6437307220156	435	35	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCGGTTCATAAATGACTT	NA	False	NA	NA	False	NA	NA	NA	65787594	65810677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65787705_65794023_65794151_65794350_65794412_65807849_65807993_65808439
81342	chr13	-	2416	5	Antisense	novelGene_ENSMUSG00000113388.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	14.0245320777557	73	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATAAATGACTTCCGGT	NA	False	NA	NA	False	NA	NA	NA	65562937	65527214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65529198_65529646_65529790_65548013_65548075_65548274_65548402_65562835
81343	chr13	+	1897	7	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-39	2294	multi-exon	TRUE	non_canonical	0	0	junction_6	53.6016687136594	189	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCGCTGAAACCTGGAAAT	NA	False	NA	NA	False	NA	NA	NA	66261254	66328208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840_66326525_66327361_66327515_66327599
81344	chr13	-	2170	5	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7261	22728	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	45.0686975627208	3	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAAACCTGGAAATAAAGT	1333	False	NA	NA	False	NA	NA	NA	67010196	66974986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66976714_66977719_66977867_67002549_67002611_67002809_67002937_67010088
81345	chr13	+	1992	9	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-39	32395	multi-exon	TRUE	non_canonical	0	0	junction_7	52.6426633064855	101	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	66261254	66358309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325521_66325616_66325840_66326525_66327361_66327524_66327618_66328108_66358197
81346	chr9	+	7043	40	NIC	ENSMUSG00000034593.17	novel	11702	41	NA	NA	-24461	528	combination_of_known_junctions	FALSE	canonical	3	14	junction_30	15.818663400192	54	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGAAGCCTGAATGTC	NA	False	NA	NA	False	NA	NA	NA	75023519	75126763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_75023579_75027954_75028127_75030192_75030338_75037253_75037411_75043624_75043769_75047929_75048012_75048716_75048825_75051354_75051462_75054146_75054413_75055137_75055220_75059174_75059316_75061037_75061164_75063463_75063548_75067699_75067862_75068713_75068812_75071411_75071499_75071577_75071687_75074300_75074513_75076206_75076364_75078820_75079061_75081233_75081483_75083799_75083894_75087305_75087455_75089180_75089295_75091559_75091704_75091919_75091974_75093176_75093405_75097181_75097283_75099665_75099747_75101220_75101420_75103407_75103483_75104924_75105019_75108553_75108701_75110989_75111145_75116495_75116586_75118299_75118451_75120073_75120357_75122366_75122542_75124780_75124862_75125122
81347	chr14	+	3487	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	-112	5	-112	-5	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	180	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGGGTGTGCAGTCTT	NA	False	NA	NA	False	NA	NA	NA	68321199	68326539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
81348	chrX	+	4309	6	Antisense	novelGene_ENSMUSG00000092907.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	68	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGGCTCCCCGGGGCCCG	NA	False	NA	NA	False	NA	NA	NA	73060202	73067318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_73060303_73060734_73061975_73063506_73063565_73063924_73064142_73064548_73067140_73067215
81349	chr5	-	2711	19	NNC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	9	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	67.1017515548469	320	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCCGGATTGTGTCCAAG	NA	False	NA	NA	False	NA	NA	NA	140307296	139994452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_139995030_140002294_140002386_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
81350	chr15	-	7123	3	ISM	ENSMUSG00000022237.18	ENSMUST00000123325.9	7466	4	42408	-242	-69	242	3prime_fragment	FALSE	canonical	2	3	junction_2	2	38	76	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAATAATTGGAAATATA	NA	False	NA	NA	False	NA	NA	NA	31325464	31291381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_31298131_31305137_31305279_31325231
81351	chr5	+	1400	3	Antisense	novelGene_ENSMUSG00000011884.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCACCTCCAGGATGTT	NA	False	NA	NA	False	NA	NA	NA	114807463	114814388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_114808648_114812109_114812271_114814333
81352	chr10	-	3490	8	NNC	ENSMUSG00000063320.12	novel	406	3	NA	NA	-44	6563	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	155.998822601522	3539	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTAGTATTGAATCTTAG	NA	False	NA	NA	False	NA	NA	NA	82459106	82449121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_82449333_82449943_82450061_82451226_82451465_82452292_82452627_82453306_82454699_82455149_82456052_82458541_82458659_82458927
81353	chr7	-	5092	8	Antisense	novelGene_ENSMUSG00000053091.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	83	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTACTCCAGGCCACCGTAC	NA	False	NA	NA	False	NA	NA	NA	66366943	66339713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_66339770_66345921_66346054_66357786_66358301_66358385_66358475_66359039_66359182_66359904_66360492_66361617_66361795_66363548
81354	chr18	-	5803	31	NIC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	9	-24	intron_retention	FALSE	canonical	1	536	junction_19	330.110257674951	17	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAAACTTGCATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	42395174	42335435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
81355	chr5	-	3934	8	NNC	ENSMUSG00000029156.12	novel	3786	6	NA	NA	-18577	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	30.3052497641136	85	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTCAGTTTCTTCGTGAC	NA	False	NA	NA	False	NA	NA	NA	73823710	73790093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73817744_73817831_73823363_73823482_73823648
81356	SIRV10002	+	4538	1	FSM	SIRV10002A	SIRV10002	10001	1	0	5463	0	-5463	mono-exon	FALSE	NA	NA	NA	NA	NA	151	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTGGTAATAGAGGTCAA	NA	False	NA	NA	False	NA	NA	NA	0	4538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV10002_+_0_4500
81357	chr15	-	1951	9	NNC	ENSMUSG00000022992.18	novel	1980	9	NA	NA	598	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	477.977771449677	11	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGTAAAGTGATCTGGA	NA	False	NA	NA	False	NA	NA	NA	98431527	98416698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98417429_98418198_98418307_98419516_98419644_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429604_98429780_98431398
81358	chr6	+	1411	9	NNC	ENSMUSG00000004264.18	novel	1318	10	NA	NA	-94	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	902.100985200659	4649	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	124689204	124693913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692999_124693568
81359	chr17	-	2364	4	FSM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	-50	-2	-50	2	multi-exon	FALSE	non_canonical	0	0	junction_3	227.371941980535	250	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTGTTCCATTCAGC	NA	False	NA	NA	False	NA	NA	NA	7228605	7222407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_7224424_7225052_7225168_7228135_7228190_7228426
81360	chr4	+	6784	11	FSM	ENSMUSG00000028282.13	ENSMUST00000029950.10	6799	11	15	0	15	0	multi-exon	FALSE	canonical	3	20	junction_1	76.4659401302305	234	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTAGTATGCTTCTT	-5	True	NA	NA	False	NA	NA	NA	32615492	32653265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_32615740_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363_32641559_32643539_32646661_32648026_32648127_32649172_32649258_32652673
81362	chr14	+	6075	36	NNC	ENSMUSG00000054509.8	novel	6387	35	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	5.02759730824552	60	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTAGATGCTGTCTCAGTG	1117	False	NA	NA	False	NA	NA	NA	56813105	56897251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56813188_56821615_56821749_56823013_56823210_56825205_56825270_56825875_56825952_56827335_56827438_56827820_56827971_56829747_56829886_56830680_56830855_56832710_56832872_56835032_56835171_56835788_56835885_56839720_56839905_56840207_56840365_56844878_56845004_56845817_56845950_56848210_56848298_56851110_56851276_56851856_56851904_56852143_56852223_56853788_56853927_56857910_56858107_56859640_56859709_56861473_56861662_56864846_56864947_56866530_56866702_56866923_56867005_56871668_56871750_56873183_56873280_56875304_56875428_56878711_56878775_56884630_56885204_56885485_56886407_56889704_56889805_56892938_56893072_56896694
81363	chr2	+	1414	11	Genic_Genomic	ENSMUSG00000086430.2	novel	1065	2	NA	NA	-15954	5067	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGAAGACCAGGAATGAGG	NA	False	NA	NA	False	NA	NA	NA	5026136	5051011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_5026292_5028876_5028961_5031924_5032058_5036072_5036229_5037940_5038028_5038956_5039113_5039776_5039893_5041479_5041582_5044949_5045084_5047256_5047334_5050797
81364	chr7	-	2239	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	1	-620	1	617	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	1024	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAGTGAACAGAATGAGA	NA	False	NA	NA	False	NA	NA	NA	35237169	35192416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
81365	chr5	-	2523	6	ISM	ENSMUSG00000029505.18	ENSMUST00000112435.9	10420	52	0	74692	0	-995	5prime_fragment	FALSE	canonical	2	6	junction_3	24.7256951368409	250	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTATTGTTGCTGTTAGT	NA	False	NA	NA	False	NA	NA	NA	110918583	110886930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110887548_110888047_110888156_110889835_110889927_110901669_110901781_110903262_110904633_110918357
81367	chr12	-	4211	13	FSM	ENSMUSG00000042507.16	ENSMUST00000110294.2	7156	13	-38	2983	-38	198	multi-exon	FALSE	canonical	3	72	junction_9	16.3681601491025	56	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCAAGGACAGTGTTAAG	NA	False	NA	NA	False	NA	NA	NA	84240827	84199034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_84199336_84199608_84199806_84201668_84201882_84203200_84203351_84205028_84205118_84205749_84205826_84206423_84206528_84206648_84206792_84207252_84207320_84209029_84209376_84218233_84218534_84219527_84221198_84240272
81368	chr1	+	1445	2	Antisense	novelGene_ENSMUSG00000038633.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGTGGTGGCCAAAGGG	NA	False	NA	NA	False	NA	NA	NA	182103533	182107060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182104457_182106538
81369	chr19	+	5006	20	Antisense	novelGene_ENSMUSG00000054611.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	20	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGGATCCAAATTTACAAA	NA	False	NA	NA	False	NA	NA	NA	4367668	4444921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_4369312_4370181_4370398_4370927_4371087_4372416_4372581_4374365_4375075_4376836_4376927_4378155_4378288_4378980_4379251_4381213_4381298_4392874_4393270_4395545_4395671_4398671_4398788_4400202_4400361_4401766_4401855_4402291_4402401_4406773_4406953_4411564_4411615_4412005_4412085_4412805_4412945_4444820
81370	chr4	-	2392	2	NNC	ENSMUSG00000057637.14	novel	7304	10	NA	NA	58846	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGAGTGTGCGCACGCTC	NA	False	NA	NA	False	NA	NA	NA	142862459	142833960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_142834232_142860338
81371	chr18	+	2446	10	FSM	ENSMUSG00000024563.17	ENSMUST00000091831.13	1645	10	196	-997	-149	433	multi-exon	FALSE	canonical	3	36	junction_2	75.1282031834933	250	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGACCTTTTGCCTCATTT	NA	False	NA	NA	False	NA	NA	NA	76374967	76438798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_76375051_76395510_76395799_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
81372	chr12	+	1037	1	Antisense	novelGene_ENSMUSG00000051235.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTTAAAGCAAACAAACAA	3089	False	NA	NA	False	NA	NA	NA	11314658	11315695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_11314700_11315700
81374	chr13	+	3846	2	NNC	ENSMUSG00000114926.2	novel	463	2	NA	NA	-12797	-2502	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	38	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAACGAAAGCAACTTAAG	NA	False	NA	NA	False	NA	NA	NA	97634914	97649736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97634966_97645941
81375	chr10	+	3859	15	ISM	ENSMUSG00000034902.18	ENSMUST00000161854.8	4258	18	12800	7	-4884	-7	3prime_fragment	FALSE	canonical	3	84	junction_13	38.9575907565011	183	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAACAGCTCCTCTCCG	2129	False	NA	NA	False	NA	NA	NA	81141637	81155799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81141664_81142141_81142260_81143317_81143471_81144781_81145082_81146512_81146719_81147476_81147561_81147807_81147857_81148335_81148421_81148741_81148904_81149196_81149336_81149453_81149487_81149828_81149928_81150825_81150953_81153159_81153238_81153599
81376	chr19	+	871	1	NIC	ENSMUSG00000033760.18	novel	2106	5	NA	NA	-1898	-333	mono-exon	FALSE	NA	NA	NA	NA	NA	26	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAAATGGATTTTGCCAC	NA	False	NA	NA	False	NA	NA	NA	4809525	4810396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_4809500_4810400
81377	SIRV7	-	2384	5	NNC	SIRV7A	novel	2498	5	NA	NA	7	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1334.65969445398	2	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGTGTTAATATGAATCAA	NA	False	NA	NA	False	NA	NA	NA	147911	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_2676_2993_3112_3809_3897_114680_114809_147534
81378	chr1	-	2577	4	NIC	ENSMUSG00000058407.13	novel	2605	4	NA	NA	-8	0	intron_retention	FALSE	canonical	3	195	junction_3	299.689098159335	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	38036332	38026476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_38026861_38029283_38029539_38033072_38034923_38036244
81379	chr6	-	1476	11	FSM	ENSMUSG00000000399.11	ENSMUST00000205002.3	1445	11	-180	149	-169	126	multi-exon	FALSE	canonical	3	1115	junction_7	83.3223259396904	2562	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATCGACACACACAACTG	NA	False	NA	NA	False	NA	NA	NA	126826268	126798832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_126799153_126801898_126801966_126804502_126804599_126809434_126809512_126811391_126811460_126813181_126813285_126817460_126817603_126819083_126819176_126821270_126821369_126821753_126821925_126826026
81380	chr18	-	1482	9	NIC	ENSMUSG00000024539.18	novel	1568	10	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	176.128814720931	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	67857663	67798581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67857511
81381	chr18	+	3553	9	NNC	ENSMUSG00000042439.14	novel	5757	10	NA	NA	-578	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	27.5	2	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACGTCTGGCCCTTGAG	NA	False	NA	NA	False	NA	NA	NA	65757630	65821993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595_65818762_65820032_65820193_65820458
81382	chr4	-	3988	14	NIC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-5	-21	intron_retention	FALSE	canonical	3	684	junction_3	51.3320781628867	9	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACTGTGACTGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	155845555	155825118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155825810_155830485_155831939_155833127_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
81383	chr8	+	2705	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	-9	51	-9	-51	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	500	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTCATTCCCTATATCTCA	NA	False	NA	NA	False	NA	NA	NA	39472989	39619316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
81384	chr11	-	3460	10	FSM	ENSMUSG00000018547.9	ENSMUST00000018691.9	5053	10	86	1507	86	-1507	multi-exon	FALSE	canonical	3	13	junction_3	2.70801280154532	40	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACAAGTTTTCTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	97635444	97607489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97609766_97610555_97610660_97611048_97611308_97613187_97613302_97613765_97613805_97615204_97615352_97617530_97617684_97620379_97620477_97623483_97623582_97635271
81385	chr2	+	2605	17	Antisense	novelGene_ENSMUSG00000027620.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	77	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGGGCAGCGGCTTCGG	9564	False	NA	NA	False	NA	NA	NA	155989171	156021999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_155990115_155990207_155990283_155991154_155991262_155992654_155992737_155996158_155996192_156000319_156000400_156000957_156001162_156003487_156003554_156003747_156003878_156004644_156004800_156006723_156006840_156009453_156009512_156009604_156009671_156014747_156014944_156019263_156019305_156021095_156021154_156021804
81386	chr7	+	3239	2	Antisense	novelGene_ENSMUSG00000092225.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATTCTCCTCAGCTACA	NA	False	NA	NA	False	NA	NA	NA	42385148	42516625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_42385900_42514137
81387	chr16	-	2118	20	NIC	ENSMUSG00000022771.18	novel	2333	21	NA	NA	5	-119	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	203.840032875709	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATTTCTGATCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	16929116	16904538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
81388	chr11	-	4970	15	FSM	ENSMUSG00000000538.19	ENSMUST00000102683.11	4999	15	29	0	29	0	multi-exon	FALSE	canonical	3	31	junction_8	7.39553091745416	40	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTGTGATGTCTGA	NA	False	NA	NA	False	NA	NA	NA	60243702	60117540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60121068_60121926_60121964_60123723_60123784_60132643_60132720_60133533_60133652_60135887_60136012_60136461_60136511_60139756_60139891_60149681_60149799_60151880_60152040_60153474_60153610_60161143_60161294_60165749_60165829_60171024_60171110_60243582
81389	chr13	+	6526	30	ISM	ENSMUSG00000048264.17	ENSMUST00000174552.8	8023	37	276930	0	-57348	0	3prime_fragment	TRUE	canonical	3	44	junction_1	6.54609558589992	59	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCAGTTTCTTAATTGATA	1807	False	NA	NA	False	NA	NA	NA	9603493	9718964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_9603508_9610706_9610799_9613149_9613261_9617866_9617991_9618336_9618447_9618626_9618730_9621085_9621151_9625169_9625264_9625397_9625518_9626839_9626955_9651392_9651533_9654524_9654662_9656358_9656568_9658979_9659095_9660732_9660935_9664382_9664493_9665780_9665862_9671914_9672039_9672617_9672740_9673792_9673905_9673993_9674104_9678008_9678140_9684757_9684927_9687130_9687302_9697014_9697077_9704638_9704697_9706672_9706748_9709280_9709456_9712172_9712297_9715813
81390	chr17	-	2340	5	Antisense	novelGene_ENSMUSG00000023902.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	92	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCACAACTCCCACACCT	NA	False	NA	NA	False	NA	NA	NA	23829798	23824545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_23824938_23826095_23826363_23826553_23826618_23827080_23827139_23828239
81391	chr2	-	1758	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	-5	-411	-5	411	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	1626	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATAAGACTTGCCTT	NA	False	NA	NA	False	NA	NA	NA	50186734	50169481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
81392	chr10	-	3920	16	ISM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	19	50491	19	-50491	5prime_fragment	FALSE	canonical	3	326	junction_12	28.6430910808639	7	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATAATTCCCAACATAAAT	NA	False	NA	NA	False	NA	NA	NA	41179237	41114658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
81393	chr8	+	2440	4	NIC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_1	108.943410386616	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTAGAAGTGCATTCATG	NA	False	NA	NA	False	NA	NA	NA	75820248	75827215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75820401_75822483_75823970_75825393_75825494_75826513
81394	chr1	-	3857	17	NNC	ENSMUSG00000025932.15	novel	4347	18	NA	NA	83	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	17.5560486371507	1	145	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTGCAGTACTGTATG	NA	False	NA	NA	False	NA	NA	NA	14379977	14239194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254568_14254734_14279089_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
81395	chr11	-	3617	12	NNC	ENSMUSG00000010025.20	novel	2578	10	NA	NA	0	1196	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	46.9765195435949	5	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTTAGGATCAGCTGTA	1077	False	NA	NA	False	NA	NA	NA	61158267	61137156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61137447_61137635_61139309_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679_61157841_61158064
81396	chr6	-	2982	7	FSM	ENSMUSG00000055239.11	ENSMUST00000068697.11	3251	7	269	0	-7	0	multi-exon	FALSE	canonical	3	1059	junction_2	56.146880788003	427	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCACTCGAATTTCTTTGG	8734	False	NA	NA	False	NA	NA	NA	72876693	72818096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72820114_72825207_72825491_72826426_72826602_72827365_72827468_72835756_72835897_72838740_72838909_72876596
81397	chr4	-	2902	5	Antisense	novelGene_ENSMUSG00000028423.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGACGCCCTCTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	41012605	41001052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41003097_41004326_41004437_41004825_41004943_41009186_41009268_41012055
81398	chr6	+	1799	5	FSM	ENSMUSG00000029910.15	ENSMUST00000125430.2	1680	5	-41	-78	-6	78	multi-exon	FALSE	canonical	3	769	junction_4	89.7646227642048	16	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAGTGGATTGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	66512367	66518082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
81399	chr3	+	946	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	165	228	108	-228	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	1067	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	NA	False	NA	NA	NA	87826977	87830741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
81401	chr16	-	455	1	ISM	ENSMUSG00000022521.11	ENSMUST00000023165.9	10820	31	129569	2646	4167	-273	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTGTTTGTTTTTTG	6370	False	NA	NA	False	NA	NA	NA	3902292	3901837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_3901800_3902300
81402	chr9	-	3261	7	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	40	-597	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	40.1306892816735	296	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTGTGAACTCAACATA	NA	False	NA	NA	False	NA	NA	NA	57347334	57320547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57346396
81403	chr5	-	4002	11	NIC	ENSMUSG00000036980.14	novel	2619	15	NA	NA	1298	0	intron_retention	FALSE	canonical	3	614	junction_5	58.6284060844229	4	119	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTAAGTTTGTGAGCCT	3271	False	NA	NA	False	NA	NA	NA	138184169	138176889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180565_138180675_138180754_138180859_138181006_138181356_138181984_138182100_138182188_138182593
81404	chr7	-	2007	9	Antisense	novelGene_ENSMUSG00000066979.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	43	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAAGGCGGAGAGGAAGC	NA	False	NA	NA	False	NA	NA	NA	131173624	131162108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_131162182_131162436_131162526_131162581_131162634_131163265_131163334_131165060_131165210_131167916_131168077_131169908_131170088_131170230_131170451_131172607
81405	chr2	+	1381	4	FSM	ENSMUSG00000038900.18	ENSMUST00000125415.3	600	4	-55	-726	-35	-6	multi-exon	FALSE	canonical	3	5241	junction_1	528.984771887517	48	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGAATGGGCTTGGCTG	5767	False	NA	NA	False	NA	NA	NA	32851696	32854049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996
81406	chr11	-	5186	22	NNC	ENSMUSG00000040594.20	novel	5001	28	NA	NA	29048	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	63.455485495391	85	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAAAGAACGCTGTGGG	NA	False	NA	NA	False	NA	NA	NA	33434046	33161805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33163499_33167291_33167420_33169170_33169270_33193109_33193277_33214635_33214775_33216109_33216325_33233907_33233991_33239563_33239672_33247341_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33354081_33354200_33391802_33391939_33402443_33402550_33424886_33425079_33428163_33428337_33429142_33429290_33431021_33431142_33433005
81407	chr15	-	2263	16	NIC	ENSMUSG00000023044.3	novel	2279	15	NA	NA	14	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_15	28.5420547418873	208	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTTGGTATGTTTTAAA	6306	False	NA	NA	False	NA	NA	NA	102112654	102085434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112573
81408	chr15	+	3040	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	-16	-1793	-16	1793	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	3313	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTTCTCAAAGTGG	NA	False	NA	NA	False	NA	NA	NA	43340608	43392952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
81409	chr15	-	4139	5	FSM	ENSMUSG00000044636.7	ENSMUST00000061457.7	4375	5	227	9	227	-9	multi-exon	FALSE	canonical	3	12	junction_4	9.28372231381357	69	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAGAATGGTGTGGGTT	NA	False	NA	NA	False	NA	NA	NA	100393142	100377459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_100380582_100382330_100382628_100385825_100386086_100387315_100387548_100392914
81410	chrX	-	1257	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	184	6	-37	-6	multi-exon	FALSE	canonical	3	555	junction_2	7.5	3569	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTACGTTGCAATGCT	NA	False	NA	NA	False	NA	NA	NA	165262679	165240254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_165241340_165245310_165245339_165262535
81411	chr9	-	826	1	Genic_Genomic	ENSMUSG00000074476.7	novel	NA	NA	NA	NA	-166	-2505	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCAGTGTCCTTCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	21671765	21670939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_21670900_21671800
81412	chr7	-	585	3	NNC	ENSMUSG00000060591.10	novel	655	2	NA	NA	-13599	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4787	98	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCACGGGGTGGCAACTCT	NA	False	NA	NA	False	NA	NA	NA	140549499	140534770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140535087_140535582_140535733_140549380
81413	chr5	+	3690	1	Genic_Genomic	ENSMUSG00000006638.16	novel	NA	NA	NA	NA	-11	-1345	mono-exon	FALSE	NA	NA	NA	NA	NA	17	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTTCCCTTTAGAGACC	NA	False	NA	NA	False	NA	NA	NA	31107398	31111088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_31107400_31111100
81414	chr11	-	1477	2	ISM	ENSMUSG00000020496.11	ENSMUST00000094151.6	1949	4	4541	1	4541	-1	3prime_fragment	TRUE	canonical	3	1240	junction_1	0	326	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGTTTCCATACCTCC	NA	False	NA	NA	False	NA	NA	NA	58825201	58823114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_58824223_58824832
81415	chr6	-	1669	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	3	-344	3	344	multi-exon	FALSE	canonical	3	371	junction_1	503.213915644191	947	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTGGTTATAGACAAAT	NA	False	NA	NA	False	NA	NA	NA	124942498	124935031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
81416	chr6	-	2083	7	NIC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	207	junction_2	17.2086864370552	173	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	NA	False	NA	NA	NA	120508267	120486454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
81417	chr12	+	1486	10	NNC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	1	34	junction_9	268.690009095341	6	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTCATACAGATGAAATGGC	NA	False	NA	NA	False	NA	NA	NA	59060152	59075185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074579
81418	chr2	-	3919	16	NNC	ENSMUSG00000027366.13	novel	5616	15	NA	NA	196	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.58836422143355	143	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTATTCTTTTGTA	8475	False	NA	NA	False	NA	NA	NA	126774959	126732310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_126733376_126734876_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
81419	chr1	+	4246	9	NIC	ENSMUSG00000025995.17	novel	3226	20	NA	NA	1	7858	intron_retention	FALSE	canonical	3	553	junction_3	48.6338359581064	21	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGATTTTAATCCATAAA	NA	False	NA	NA	False	NA	NA	NA	45834667	45852465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349
81420	chr5	+	3399	11	NNC	ENSMUSG00000029528.20	novel	3706	11	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	86.2023781574499	1	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGAGCTGATGTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	115644761	115694041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115644928_115682401_115682434_115683019_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
81422	chr13	+	2620	9	NNC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	326.292717509907	10	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTGTTTTGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	85337521	85361842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_85338342_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
81423	chr11	+	2635	2	NIC	ENSMUSG00000060938.15	novel	606	4	NA	NA	12	431	intron_retention	FALSE	canonical	3	17193	junction_1	0	135	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTTGAGCTTAGTTCCT	NA	False	NA	NA	False	NA	NA	NA	68792420	68795791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68793269_68794004
81424	chr7	-	4577	11	NIC	ENSMUSG00000025586.18	novel	3111	12	NA	NA	10	-3	intron_retention	FALSE	canonical	3	9	junction_10	20.68912757948	22	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTTGTAGTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	81105203	80996778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80999621_81000092_81000188_81001491_81001691_81005622_81005760_81006641_81006747_81007052_81007167_81009476_81009730_81011333_81011558_81021759_81021949_81085950_81086126_81104959
81425	chr7	+	5909	8	FSM	ENSMUSG00000029461.18	ENSMUST00000207875.2	4077	8	-88	-1744	-3	-455	multi-exon	TRUE	canonical	3	35	junction_2	3.48173074484398	194	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGCATCCTCTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	100355838	100490133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100356101_100436010_100436099_100462126_100462208_100473338_100473465_100480534_100480678_100483215_100483391_100484533_100484665_100485230
81426	chr6	+	4625	14	NNC	ENSMUSG00000001630.14	novel	4550	14	NA	NA	-26	-5	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	41.3643072849016	207	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTGTTGGTGGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	146626466	146680305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668181_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
81427	chr8	+	5672	2	FSM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	17	3	17	-3	multi-exon	FALSE	canonical	3	69	junction_1	0	324	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGCTTCCTTTAGTT	NA	False	NA	NA	False	NA	NA	NA	105318099	105325655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_105318228_105320111
81428	chr7	-	5354	15	ISM	ENSMUSG00000039176.18	ENSMUST00000073889.14	7837	23	7109	455	188	-455	3prime_fragment	FALSE	canonical	3	255	junction_13	45.5233176402994	154	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGCCAAGGCTGCCTT	NA	False	NA	NA	False	NA	NA	NA	79109001	79096433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101777_79101854_79101978_79103452_79103700_79103786_79103923_79104341_79104460_79104558_79104613_79105182_79105344_79105788_79105897_79106182_79106261_79106455_79106577_79107921_79108159_79108921
81429	chr6	+	3278	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	-4	-1657	2	1657	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	4535	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATATGTTTCTTGGTTT	5868	False	NA	NA	False	NA	NA	NA	67243990	67262952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
81430	chr19	+	3534	12	FSM	ENSMUSG00000024985.21	ENSMUST00000041717.14	3590	12	457	-401	8	-1	multi-exon	FALSE	canonical	3	39	junction_11	15.7312133791442	43	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAAGGCTGGCCGCTTGC	NA	False	NA	NA	False	NA	NA	NA	55730708	55922085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55919865
81431	chr6	-	1613	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-12	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3173.49136930832	2	78	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACAAGTTTTATAAAAT	NA	False	NA	NA	False	NA	NA	NA	51446886	51438139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438962_51439036_51440386_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444261_51446650
81432	chr11	-	3286	3	FSM	ENSMUSG00000034520.15	ENSMUST00000107075.9	2314	3	-999	27	-112	-27	multi-exon	FALSE	canonical	3	164	junction_2	309	16	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAGGAAAAAATCCTTG	1007	False	NA	NA	False	NA	NA	NA	102696726	102690431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102692022_102693666_102693743_102695106
81434	chr4	+	2599	5	NIC	ENSMUSG00000028420.14	novel	2862	6	NA	NA	-9	-115	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	42.4345083628879	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGCAAAATTAATATGTT	-25	True	NA	NA	False	NA	NA	NA	53826035	53861904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_53826221_53848865_53849051_53850473_53850562_53854311_53854430_53859881
81435	chrX	+	3833	5	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	-2276	-791	intron_retention	FALSE	canonical	3	812	junction_3	33.5438146310166	13	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCCCCTTATGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	150839186	150844899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
81436	chr8	-	2987	1	Intergenic	novelGene_1773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGTTCTGTTCTATTTGTG	NA	False	NA	NA	False	NA	NA	NA	120313710	120310723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_120310700_120313700
81437	chr4	+	5006	20	NNC	ENSMUSG00000028528.18	novel	5127	20	NA	NA	84	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	42.5985577116594	1	232	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATTAAAAAGGATACAAA	NA	False	NA	NA	False	NA	NA	NA	101353928	101499973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_101353961_101441925_101441979_101454997_101455149_101456147_101456198_101456291_101456441_101463785_101463909_101468421_101468556_101470058_101470254_101471371_101471488_101472777_101472858_101473682_101473877_101473981_101474063_101475590_101476026_101480857_101480993_101482889_101482959_101485233_101485354_101492187_101492452_101493954_101494098_101496462_101496640_101497668
81438	chr13	-	1952	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	-255	-218	-255	218	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	1102	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAATGTTCATGCGCAA	122	False	NA	NA	False	NA	NA	NA	67081407	67059963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
81439	chr10	+	4528	1	Antisense	novelGene_ENSMUSG00000097327.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCCCAGCTGAGTCTCCG	NA	False	NA	NA	False	NA	NA	NA	22020201	22024729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_22020200_22024700
81440	chr14	-	3425	10	NNC	ENSMUSG00000022052.10	novel	4010	10	NA	NA	-7	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	231.298641864571	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGTTAAATTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	67309900	67252129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67254136_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
81441	chr15	+	2156	5	FSM	ENSMUSG00000022338.9	ENSMUST00000227425.2	502	5	-16	-1638	0	-461	multi-exon	FALSE	canonical	3	90	junction_3	351.373732655132	24	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGGCCTTGAGCATGAA	9616	False	NA	NA	False	NA	NA	NA	44291487	44300744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297249_44297370_44299007
81442	chr19	-	4763	22	ISM	ENSMUSG00000024913.17	ENSMUST00000025856.17	5161	23	27081	31	27081	-23	3prime_fragment	TRUE	canonical	2	72	junction_10	14.9772313969392	109	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTTATAAACTTAATTT	NA	False	NA	NA	False	NA	NA	NA	3709475	3634858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_3635292_3636382_3636481_3640973_3641114_3641615_3641853_3643515_3643627_3647243_3647481_3650672_3650799_3652234_3652445_3654001_3654193_3655285_3655495_3660038_3660239_3662197_3662522_3664225_3664411_3665652_3665880_3670014_3670305_3672509_3672727_3678272_3678445_3680073_3680471_3697527_3697660_3699403_3699601_3702132_3702331_3709243
81444	chr8	+	3534	7	NNC	ENSMUSG00000002345.19	novel	691	7	NA	NA	-2	2624	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	81.8229796573065	286	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGCTCAGGATTGTTAT	8819	False	NA	NA	False	NA	NA	NA	70592354	70602593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70598690_70598934_70599739
81445	chr8	+	2682	4	Intergenic	novelGene_1661	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	164	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGTGAGTCGAGCTTCC	5206	False	NA	NA	False	NA	NA	NA	72143853	72154439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_72145798_72145958_72146548_72147415_72147489_72154363
81446	chr9	+	4244	10	ISM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	50660	5	147	-5	3prime_fragment	FALSE	canonical	3	147	junction_9	30.9587539226702	93	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATAATAGTGTTCATTG	NA	False	NA	NA	False	NA	NA	NA	118385994	118411582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
81447	chr8	+	1879	6	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	3205	-2098	intron_retention	FALSE	canonical	0	0	junction_1	1336.46294374367	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111777748	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111777996_111778900_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140
81448	chr1	-	4473	21	NNC	ENSMUSG00000026463.18	novel	11725	21	NA	NA	247	-144	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	5.99895824289518	28	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCTTGGCATCACCCAAC	9461	False	NA	NA	False	NA	NA	NA	133728527	133634192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_133634735_133642791_133642969_133644242_133644351_133645525_133645738_133646437_133646652_133647061_133647254_133654194_133654302_133655460_133655549_133656434_133656615_133657454_133657687_133658106_133658349_133659400_133659644_133659963_133660179_133662785_133662948_133664353_133664390_133665727_133665857_133666275_133666402_133666900_133667159_133667651_133667850_133680826_133681486_133728374
81449	chr19	-	3633	25	NIC	ENSMUSG00000039901.11	novel	3676	26	NA	NA	-58	-22	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	41.3141546567275	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAAGTTGATTTGTGTG	6589	False	NA	NA	False	NA	NA	NA	45986985	45805824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_45807418_45808712_45808830_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
81450	chr17	+	5115	13	ISM	ENSMUSG00000034377.11	ENSMUST00000039655.3	9687	14	-909	7482	-909	6305	5prime_fragment	FALSE	canonical	2	7	junction_4	7.62078663189627	29	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTTAAAACTGTCCCCCC	NA	False	NA	NA	False	NA	NA	NA	6187513	6283421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_6189432_6227103_6227233_6235411_6235574_6248946_6249128_6251974_6252110_6257165_6257333_6263658_6263884_6264909_6265145_6269642_6269788_6272578_6272724_6274426_6274521_6279609_6279754_6281986
81451	chr2	+	1857	3	ISM	ENSMUSG00000090077.10	ENSMUST00000048077.12	1959	5	270	24	147	-19	intron_retention	FALSE	canonical	3	53	junction_2	3	6	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAATTAAACCTCTGTTCA	9858	False	NA	NA	False	NA	NA	NA	181023297	181025397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_181024108_181024279_181024338_181024408
81452	chr12	-	3176	2	NIC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8463	12	intron_retention	FALSE	canonical	3	41	junction_1	0	36	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATTTGATTCTCCTAT	NA	False	NA	NA	False	NA	NA	NA	87271867	87267801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87270042_87270931
81453	chr9	+	4612	27	FSM	ENSMUSG00000006676.17	ENSMUST00000178075.8	4512	27	-91	-9	-75	9	multi-exon	FALSE	canonical	3	222	junction_10	41.4654094097091	160	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATCCACAACATGTTATG	NA	False	NA	NA	False	NA	NA	NA	108367963	108379525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
81454	chr9	-	2739	4	ISM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	5	2	2	-2	intron_retention	FALSE	canonical	3	400	junction_3	16.8588914885357	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAATGTGTCTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	48406592	48400002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318
81455	chr8	-	6025	4	Antisense	novelGene_ENSMUSG00000009628.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATTATCATGTTCAAGAT	NA	False	NA	NA	False	NA	NA	NA	34075606	34062947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_34067611_34068983_34069023_34071532_34072774_34075524
81456	chr2	-	1928	14	NNC	ENSMUSG00000026672.12	novel	2614	14	NA	NA	32	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	47.3523866421753	10	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTGTACTTCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	5068824	5026110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041477_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
81457	chr5	-	2018	19	NIC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	26	5	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	56.5136550744733	586	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCATAATTCTTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	107745479	107696827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
81458	chr14	-	1486	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	45	7	-32	-7	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	3832	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAATTATTACATTGTC	NA	False	NA	NA	False	NA	NA	NA	47025823	47013030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
81459	chr17	+	5457	1	NIC	ENSMUSG00000024044.20	novel	4692	22	NA	NA	-3028	-4031	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	92	53	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTCTACCTTCTGCTCCA	NA	False	NA	NA	False	NA	NA	NA	69578742	69584199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_69578700_69584200
81460	chr2	+	3867	7	FSM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	18	1715	0	469	multi-exon	FALSE	canonical	3	95	junction_4	7.06320670013903	134	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGATGCCCAGGAAAGTG	NA	False	NA	NA	False	NA	NA	NA	153083470	153110452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614
81461	chr3	-	5327	24	ISM	ENSMUSG00000027770.6	ENSMUST00000029336.6	5620	25	4905	7	34	-7	3prime_fragment	FALSE	canonical	3	420	junction_17	54.1333856363491	198	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATATATAGTTGTCATG	NA	False	NA	NA	False	NA	NA	NA	62409520	62375440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_62378169_62378742_62378896_62379419_62379541_62380148_62380240_62380350_62380451_62382690_62382775_62384703_62384791_62384926_62385101_62386740_62386840_62388222_62388341_62391551_62391696_62392375_62392441_62394430_62394487_62395550_62395639_62395965_62396069_62396318_62396460_62399771_62399854_62401150_62401318_62401764_62401840_62402878_62402959_62404149_62404321_62405510_62405550_62408254_62408490_62409394
81462	chr12	-	2862	5	NNC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	25	-8	intron_retention	FALSE	canonical	2	7	junction_1	42.9243520626695	10	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAGGATTTTGTAATTCA	NA	False	NA	NA	False	NA	NA	NA	73333458	73326792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_73327407_73327729_73328431_73329385_73329511_73331408_73332050_73332677
81463	chr11	-	1355	12	NNC	ENSMUSG00000020917.18	novel	4162	27	NA	NA	-5161	757	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1619.82004408101	1	55	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGGATGCCGCAGCAAAG	5827	False	NA	NA	False	NA	NA	NA	100395085	100372327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100372347_100372522_100372674_100372970_100373126_100374534_100374625_100375425_100375554_100383330_100383442_100384362_100384439_100384709_100384907_100386685_100386746_100389010_100389180_100389446_100389589_100395028
81464	chr3	-	4525	16	FSM	ENSMUSG00000034109.16	ENSMUST00000117242.8	4551	16	7	19	-5	-19	multi-exon	FALSE	canonical	3	22	junction_8	6.26950290427133	33	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGCAACAATCACAAACCA	NA	False	NA	NA	False	NA	NA	NA	75864249	75783508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_75785485_75785952_75786025_75793581_75793651_75793979_75794148_75797828_75797939_75799195_75799279_75800089_75800344_75802141_75802445_75805277_75805440_75809707_75809792_75810553_75810637_75813705_75813857_75815436_75815491_75817315_75817366_75818881_75818957_75863418
81465	chr5	+	2307	7	NNC	ENSMUSG00000040532.15	novel	1493	6	NA	NA	-11	757	intron_retention	FALSE	non_canonical	0	0	junction_6	217.545972153014	1167	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCCGGCATCTTGTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	135037994	135041786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740_135041183_135041283
81466	chr11	+	3135	11	Fusion	ENSMUSG00000018567.15_ENSMUSG00000018559.17	novel	1627	8	NA	NA	373	0	multi-exon	FALSE	canonical	3	123	junction_4	345.23319654981	5357	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAATTGAATTTGCCCTG	NA	False	NA	NA	False	NA	NA	NA	69872354	69885766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_69872412_69875079_69875147_69875241_69875361_69875559_69875632_69879438_69879556_69879653_69879766_69880307_69880393_69880802_69882629_69883190_69883270_69883407_69883527_69885284
81467	chrX	+	3117	9	ISM	ENSMUSG00000031153.17	ENSMUST00000101694.10	2867	24	20300	8	41	-8	intron_retention	FALSE	canonical	3	59	junction_4	5.47579902845238	4	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCACTGACTGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	7676546	7686794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534
81468	chr17	+	709	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	381	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1798.31963232346	2	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACAGTAGATAGCTGAAT	6220	False	NA	NA	False	NA	NA	NA	35820098	35821658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35820121_35820304_35820436_35820877_35821037_35821184_35821241_35821317
81469	chr7	+	3561	15	NNC	ENSMUSG00000002205.17	novel	761	7	NA	NA	12	-9	intron_retention	FALSE	canonical	0	0	junction_6	63.3103789408392	8	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATCAAAGTCTGGAGAGT	NA	False	NA	NA	False	NA	NA	NA	44398082	44426930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44398822_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44411052_44411197_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44419078_44420287_44420347_44424799_44424960_44426645
81470	chr9	-	5244	13	Antisense	novelGene_ENSMUSG00000033335.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	142	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTCGGCCTCAGAGTCGC	7581	False	NA	NA	False	NA	NA	NA	21404662	21336264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21336552_21368797_21368871_21376875_21377027_21378826_21379030_21382636_21382736_21383906_21384068_21385825_21385971_21387768_21387903_21389574_21389642_21391699_21391840_21392626_21392714_21396944_21397016_21401036
81471	chrX	+	3038	5	Antisense	novelGene_ENSMUSG00000031347.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	40	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTACCATCACCCAACGGA	NA	False	NA	NA	False	NA	NA	NA	71955554	71961913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_71957906_71958451_71958584_71959870_71959997_71960288_71960452_71961647
81472	chr14	+	1642	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	-314	0	10	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	1059	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCTCTGAGATCATTA	NA	False	NA	NA	False	NA	NA	NA	73747464	73756299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
81473	chr11	+	2068	8	NIC	ENSMUSG00000020873.16	novel	1523	9	NA	NA	29	-7	intron_retention	FALSE	canonical	3	260	junction_3	11.771636613973	20	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAAGTGCGAGACCCTG	NA	False	NA	NA	False	NA	NA	NA	95275546	95282595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_95275940_95276626_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
81474	chr19	+	2078	13	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	519.84316545153	1	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTCCGGGTCCGTTTC	865	False	NA	NA	False	NA	NA	NA	6413982	6427221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418436_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424060_6424314_6424578_6424639_6424748_6424929_6426325_6426628_6426954
81476	chr4	+	4075	2	ISM	ENSMUSG00000037692.15	ENSMUST00000105914.2	5898	6	23308	-342	-3448	-44	3prime_fragment	FALSE	canonical	3	130	junction_1	0	114	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCCAAGTTTGTATTAAA	NA	False	NA	NA	False	NA	NA	NA	132790111	132804895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_132793589_132804297
81477	chr13	-	3171	22	ISM	ENSMUSG00000009470.18	ENSMUST00000109399.9	8445	24	2499	5034	2457	3005	3prime_fragment	FALSE	canonical	3	423	junction_13	40.6689527627755	7	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAACAAATTTGAACAAC	NA	False	NA	NA	False	NA	NA	NA	99025049	98980560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973
81478	chr8	-	4075	19	FSM	ENSMUSG00000031858.17	ENSMUST00000212451.2	1931	19	135	-2279	86	-1162	multi-exon	TRUE	canonical	3	104	junction_6	54.8951019875382	99	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCTGGTCTACAGAGTG	NA	False	NA	NA	False	NA	NA	NA	70495249	70469934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70472311_70472396_70472525_70473069_70473161_70474785_70474898_70475005_70475084_70475269_70475320_70476260_70476348_70478477_70478544_70478823_70478902_70479322_70479427_70480114_70480206_70480271_70480419_70481268_70481425_70481857_70481886_70483291_70483387_70484112_70484209_70485828_70485895_70486260_70486279_70495041
81479	chr18	+	3706	14	FSM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	0	5907	0	-30	multi-exon	FALSE	canonical	3	171	junction_3	17.4029855290822	197	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATCTCAGTAGAGTTGGA	NA	False	NA	NA	False	NA	NA	NA	32200793	32231474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32201093_32203159_32203276_32212723_32213631_32216318_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
81480	chr11	-	1555	6	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	356	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	405.996059094174	2	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCCCCAGAGCTCCAGT	NA	False	NA	NA	False	NA	NA	NA	120534113	120530242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532638_120533713_120533789_120533984
81481	chr5	+	3256	14	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	1285	7	intron_retention	FALSE	canonical	3	113	junction_13	44.667343749468	3	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATCAAGACTTGGAA	NA	False	NA	NA	False	NA	NA	NA	121919539	121952790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121951447
81482	chr13	+	3944	10	NNC	ENSMUSG00000021712.16	novel	3416	11	NA	NA	4489	47	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	55.184538897533	3	151	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATGCTAGTTAACAATT	NA	False	NA	NA	False	NA	NA	NA	104320094	104339927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_104320549_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
81483	chr6	+	931	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	10	2	10	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGGTTGCATATGTT	NA	False	NA	NA	False	NA	NA	NA	148256163	148257094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148257100
81484	chr11	-	3138	16	FSM	ENSMUSG00000076435.4	ENSMUST00000103164.4	3154	16	20	-4	20	4	multi-exon	FALSE	canonical	3	47	junction_6	8.37615663654877	121	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGGACTGTAACTCACAT	7305	False	NA	NA	False	NA	NA	NA	94492677	94447923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_94449184_94449465_94449535_94449690_94449802_94450288_94450431_94452065_94452218_94453636_94453745_94460135_94460213_94460766_94460859_94461128_94461287_94461439_94461536_94462096_94462263_94462387_94462507_94463051_94463106_94463347_94463477_94463858_94464055_94492468
81485	chr18	+	5300	11	Antisense	novelGene_ENSMUSG00000041258.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	40	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTGGAGACTTTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	82611717	82639351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_82614636_82615035_82615876_82617062_82617248_82619383_82619509_82622306_82622507_82625863_82626004_82627411_82627601_82635834_82636013_82636865_82637109_82638442_82638589_82639215
81486	chr13	-	6367	7	ISM	ENSMUSG00000034525.8	ENSMUST00000043493.7	7667	19	30926	6	2111	-6	3prime_fragment	FALSE	canonical	3	141	junction_2	15.4569294061488	84	52	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATACACACTGTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	70754827	70736821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_70737932_70740691_70740791_70742943_70743051_70744273_70744465_70747168_70747330_70749186_70749356_70750297
81487	chr2	+	1403	12	Genic_Genomic	ENSMUSG00000086430.2	novel	1065	2	NA	NA	-15951	174507	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCAAATACAAGCAGGCC	NA	False	NA	NA	False	NA	NA	NA	5026139	5220451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_5026292_5028876_5028961_5031924_5032058_5036072_5036229_5037940_5038034_5038962_5039113_5039776_5039893_5041479_5041582_5044949_5045084_5047256_5047334_5050797_5050986_5220433
81489	chr9	-	3498	8	ISM	ENSMUSG00000059475.14	ENSMUST00000080386.13	2417	9	-8	-827	-4	-12	intron_retention	FALSE	canonical	3	13	junction_7	7.74333156163866	61	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTGACCTTTTGGAGGAG	NA	False	NA	NA	False	NA	NA	NA	20404046	20380015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681
81490	chrX	+	3473	4	Genic_Genomic	ENSMUSG00000087193.8	novel	683	3	NA	NA	9845	-34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCCTAACCGGCCTCGCG	4493	False	NA	NA	False	NA	NA	NA	7927674	7940824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_7930297_7936826_7937489_7938560_7938706_7940780
81491	chr8	+	2086	1	Intergenic	novelGene_1641	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCTAAAAATACTTTTGT	NA	False	NA	NA	False	NA	NA	NA	48677724	48679810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_48677700_48679800
81492	SIRV3	+	1755	3	NNC	SIRV3A	novel	2373	3	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	417	1	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCATTTAACAGGTTCT	NA	False	NA	NA	False	NA	NA	NA	1962	7818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2006_6057_6830_6878
81493	SIRV3	+	1461	3	FSM	SIRV3A	SIRV303	2018	3	-1	558	-1	546	multi-exon	FALSE	canonical	3	1857	junction_1	482	2	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTAGTATTGTTATAGGCG	NA	False	NA	NA	False	NA	NA	NA	1962	7264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4568_4780_6057
81494	chr10	+	6201	35	NNC	ENSMUSG00000034163.11	novel	1546	7	NA	NA	5276	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.1709554239401	102	25	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAATAGTGGGACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	115226139	115268677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_115226233_115226554_115226972_115233909_115233975_115236619_115236819_115237513_115237738_115239104_115239226_115240104_115240203_115242257_115242468_115242638_115242804_115243779_115243918_115244775_115244898_115244997_115245148_115246433_115246609_115247103_115247236_115247624_115248168_115248261_115248372_115249866_115249999_115250100_115250223_115251143_115251246_115251524_115251645_115252643_115252828_115254546_115254734_115255676_115255866_115256546_115256785_115259109_115259216_115259288_115259488_115260462_115260558_115262940_115263052_115263302_115263408_115263529_115263696_115264765_115264867_115266557_115266660_115267307_115267348_115267607_115267671_115267800
81495	chr13	+	7991	10	NNC	ENSMUSG00000021763.18	novel	3546	6	NA	NA	-4532	-203	intron_retention	FALSE	canonical	3	10	junction_1	10.3923048454133	74	38	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAATTTGTATTTGAATTG	NA	False	NA	NA	False	NA	NA	NA	113425160	113506843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_113425260_113453617_113453782_113454198_113457754_113459268_113459740_113464108_113464286_113478903_113479103_113483044_113483177_113488130_113488301_113502617_113502802_113504003
81496	chr1	+	2218	14	NNC	ENSMUSG00000026017.14	novel	2763	18	NA	NA	-20554	-6053	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	76	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCGACCGGACGCTCCC	NA	False	NA	NA	False	NA	NA	NA	60116851	60137586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_60117403_60119678_60119751_60121195_60121329_60121449_60121559_60121670_60121814_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127315_60128409_60128516_60130173_60130274_60133590_60133688_60136666_60136883_60137297
81497	chr11	+	4815	1	ISM	ENSMUSG00000038485.7	ENSMUST00000238729.2	7131	10	31290	3	16288	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	57	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCTGTTACTTGGCTTTG	4802	False	NA	NA	False	NA	NA	NA	97284550	97289365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_97284600_97289400
81498	chr4	+	5300	10	NIC	ENSMUSG00000028890.14	novel	7631	11	NA	NA	-15	-1828	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	31.1261868235227	3	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCAATTGCTGCAATTTC	337	False	NA	NA	False	NA	NA	NA	124696359	124741344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_124696437_124698452_124698909_124713997_124714237_124715020_124715153_124718079_124718154_124718838_124718976_124724911_124724990_124731490_124731594_124732111_124732711_124737939
81499	chr5	-	1835	13	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_6	116.855412797183	43	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	NA	False	NA	NA	NA	34794526	34790990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792247_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
81500	chr2	+	4084	15	NNC	ENSMUSG00000069495.13	novel	4697	14	NA	NA	54	-392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.12780563804253	94	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAATTTTATACCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	49341551	49441568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_49341619_49341785_49341971_49378700_49378861_49403226_49403373_49412482_49412690_49418859_49419009_49420022_49420156_49422055_49422248_49425266_49425357_49426587_49426737_49426836_49427181_49435720_49435858_49437457_49437618_49438442_49438777_49439937
81501	chr8	-	902	3	NNC	ENSMUSG00000005150.17	novel	2707	5	NA	NA	-1022	-1163	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2073	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGGCCAAAACAGTTCC	NA	False	NA	NA	False	NA	NA	NA	85808957	85807486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85807902_85808399_85808504_85808574
81502	chr5	+	3079	17	ISM	ENSMUSG00000029221.16	ENSMUST00000162372.8	5711	18	8722	2390	-23	267	3prime_fragment	FALSE	canonical	3	203	junction_10	76.3347889235308	129	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTGGGTACAGAAAACTG	9108	False	NA	NA	False	NA	NA	NA	67473019	67513396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_67473189_67482016_67482077_67484195_67484296_67485040_67485134_67485784_67485868_67487235_67487295_67490396_67490465_67491908_67492012_67497293_67497350_67499436_67499573_67501872_67501913_67502968_67503041_67503468_67503577_67505262_67505429_67507124_67507255_67509994_67510109_67511874
81503	chr4	-	3622	19	FSM	ENSMUSG00000029060.18	ENSMUST00000103176.10	3642	19	15	5	10	-4	multi-exon	FALSE	canonical	3	118	junction_12	57.2103817307469	6	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGACTTTGCTTCCTGTTC	7435	False	NA	NA	False	NA	NA	NA	155753640	155739143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
81504	chr16	+	4706	11	FSM	ENSMUSG00000022601.12	ENSMUST00000050248.9	4920	11	200	14	200	-14	multi-exon	FALSE	canonical	3	98	junction_1	21.3485362495886	91	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTAAAAGCAAAGCTTTG	NA	False	NA	NA	False	NA	NA	NA	55794445	55829262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_55794735_55800957_55801194_55802537_55802770_55810621_55811458_55811804_55811982_55818368_55818615_55820941_55821087_55823071_55823190_55826272_55826432_55826537_55826714_55827170
81505	chr15	-	1733	11	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	-16	-3	intron_retention	FALSE	canonical	3	244	junction_10	39.7572634873176	492	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGCAGTGTTTGATTTC	9400	False	NA	NA	False	NA	NA	NA	98729351	98710680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713867_98723568_98723615_98729310
81506	chr2	-	5953	22	Intergenic	novelGene_2750	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGGCAGTCCTTTGGC	7880	False	NA	NA	False	NA	NA	NA	156385118	156262362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_156262503_156263021_156263219_156280503_156280553_156335822_156336013_156336874_156337040_156337777_156337883_156338403_156338449_156341506_156341581_156345562_156345781_156347682_156347772_156348268_156348422_156350730_156350830_156351050_156351226_156352674_156352800_156355945_156356129_156368806_156368912_156371307_156371390_156375699_156375787_156376604_156376690_156378899_156378978_156379283_156379401_156381726
81507	chr9	-	503	1	Antisense	novelGene_ENSMUSG00000062933.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCACCCTGGCACATGA	9523	False	NA	NA	False	NA	NA	NA	96778411	96777908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_96777900_96778400
81508	chr17	+	2294	3	Antisense	novelGene_ENSMUSG00000118589.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCGCCCCGAAGGCGGG	699	False	NA	NA	False	NA	NA	NA	35824263	35827693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35825921_35826776_35827330_35827609
81509	chr7	+	2183	12	FSM	ENSMUSG00000015165.17	ENSMUST00000174477.8	2180	12	0	-3	0	-1	multi-exon	FALSE	canonical	3	4757	junction_7	501.59715158615	1418	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAACTATTTGCTGGGGC	NA	False	NA	NA	False	NA	NA	NA	28510361	28521668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
81510	chr2	+	2141	11	NNC	ENSMUSG00000027306.16	novel	2960	11	NA	NA	-6	-377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493.437371912586	1	109	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTTTAAGCGTAAGTT	NA	False	NA	NA	False	NA	NA	NA	119449203	119480264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119449377_119454598_119454659_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474272_119474382_119477570_119477680_119479373
81511	chr18	+	4551	15	NNC	ENSMUSG00000024294.15	novel	2841	15	NA	NA	-5240	2457	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	25.9989206997333	5	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTCCTGTGCCTCAGAA	7691	False	NA	NA	False	NA	NA	NA	10755568	10814631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_10755692_10760810_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793028_10794477_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
81512	chr18	+	4625	16	NNC	ENSMUSG00000024294.15	novel	10231	21	NA	NA	-8803	2442	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	25.5400339336762	2	155	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTACCCAAACCTCTCTT	4128	False	NA	NA	False	NA	NA	NA	10752005	10814616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_10752028_10755503_10755688_10760803_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793019_10794469_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
81513	chr1	-	3120	19	FSM	ENSMUSG00000026571.13	ENSMUST00000027856.13	4110	19	184	806	184	1	multi-exon	FALSE	canonical	3	29	junction_4	5.55583332638924	67	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTGACTTTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	165287850	165157072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165165914_165167453_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
81514	chr16	-	4112	13	ISM	ENSMUSG00000045975.9	ENSMUST00000170757.3	6556	14	9930	1864	9903	1677	3prime_fragment	FALSE	canonical	3	55	junction_10	15.4513124217833	36	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAGCCAGGAATCCCCAC	NA	False	NA	NA	False	NA	NA	NA	97713903	97658272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_97660777_97669791_97670117_97671352_97671481_97676328_97676443_97677419_97677595_97678307_97678433_97680809_97680875_97682788_97682895_97684472_97684597_97687287_97687411_97691213_97691319_97693389_97693510_97713805
81515	chr2	-	3267	23	NIC	ENSMUSG00000026754.17	novel	4869	23	NA	NA	-11	-73	intron_retention	FALSE	canonical	0	0	junction_14	13.857673829577	28	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTATTTTTATAGCAAAA	NA	False	NA	NA	False	NA	NA	NA	38955511	38907737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_38908502_38909001_38909089_38909494_38909666_38910082_38910143_38912712_38912857_38913151_38913286_38913384_38913488_38914220_38914311_38923168_38923265_38924072_38924223_38925236_38925333_38929051_38929148_38931238_38931365_38937034_38937147_38937597_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955392
81516	chr10	-	5309	25	NNC	ENSMUSG00000019820.12	novel	5751	25	NA	NA	313	-117	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	27.2391670618289	2	161	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCATGATGAGAAATAAGTG	NA	False	NA	NA	False	NA	NA	NA	12424310	12258050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12423702
81517	chr7	-	4717	29	FSM	ENSMUSG00000032737.14	ENSMUST00000165052.8	4730	29	-12	25	-12	-11	multi-exon	FALSE	canonical	3	95	junction_28	22.1558429663829	76	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTCAAAGAAAAAATAAAGGA	NA	False	NA	NA	False	NA	NA	NA	101487022	101471870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486927
81518	chr11	-	4755	11	FSM	ENSMUSG00000000276.12	ENSMUST00000000285.9	5208	11	31	422	31	-422	multi-exon	FALSE	canonical	3	42	junction_8	10.9859000541603	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATTAAAGCAAAAAGCCAG	3863	False	NA	NA	False	NA	NA	NA	88951543	88928829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88931738_88932273_88932386_88932987_88933116_88935065_88935138_88939714_88939829_88940674_88940727_88941144_88941303_88941494_88941639_88943252_88943373_88946183_88946344_88950756
81519	chr4	+	1010	3	NNC	ENSMUSG00000039105.7	novel	1135	3	NA	NA	14	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2147	5	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCCTCCTGGCTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	63463022	63468935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_63463237_63466821_63466884_63468201
81520	chr2	-	1703	10	NIC	ENSMUSG00000017664.17	novel	2008	10	NA	NA	15	-182	intron_retention	FALSE	canonical	1	2	junction_5	87.4254532532901	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTGCCTAAGGCATGAG	5720	False	NA	NA	False	NA	NA	NA	165129729	165118655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122812_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
81521	chr1	-	6411	18	NNC	ENSMUSG00000057335.12	novel	6967	20	NA	NA	3	0	at_least_one_novel_splicesite	TRUE	non_canonical	3	8	junction_9	17.0829444071968	15	63	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAATGATCATAGATTTC	NA	False	NA	NA	False	NA	NA	NA	176641630	176561228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_176563548_176564409_176564462_176565093_176565188_176566646_176566736_176567484_176567656_176570066_176570215_176577491_176577619_176582731_176584550_176585962_176586084_176597278_176597437_176601999_176602477_176607826_176607962_176609816_176609977_176610062_176610119_176616029_176616112_176620101_176620192_176621070_176621216_176641461
81522	chr12	+	5543	9	Intergenic	novelGene_4419	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCACGCCGGGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	80382634	80483225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_80387051_80395093_80395218_80410773_80410847_80423293_80423506_80444426_80444559_80445544_80445683_80446722_80446759_80451327_80451472_80482957
81523	chr2	-	3937	15	NIC	ENSMUSG00000040272.15	novel	3950	15	NA	NA	-7	-1	combination_of_known_junctions	FALSE	canonical	3	5	junction_14	6.1016056769292	64	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTAGTGTCATTGCTATG	NA	False	NA	NA	False	NA	NA	NA	93680295	93663812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678532_93680109
81524	chr6	+	3314	2	ISM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	220	429	-18	-8	intron_retention	FALSE	canonical	3	2705	junction_1	0	6	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAAGTGCGTTTCTGCT	NA	False	NA	NA	False	NA	NA	NA	86348505	86355881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_86348597_86352658
81525	chr16	+	3978	1	Intergenic	novelGene_3662	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTTCCATTTTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	48418125	48422103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_48418100_48422100
81526	chr14	-	3370	30	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-11	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	130.010536479623	1	161	20	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTGTGACATCATACTAT	9849	False	NA	NA	False	NA	NA	NA	55873037	55863193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867760_55867873_55868054_55868169_55868273_55868388_55868598_55868718_55868888_55868998_55869489_55869588_55869759_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
81527	chr5	+	4046	11	ISM	ENSMUSG00000029647.16	ENSMUST00000176596.8	4152	18	69902	0	-2902	0	intron_retention	FALSE	canonical	3	126	junction_9	8.09011742807235	87	29	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTATTTCTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	147460000	147485306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_147460044_147463328_147463491_147463734_147463852_147463938_147464041_147466764_147466931_147468026_147468118_147473210_147473351_147476052_147476183_147476551_147476617_147479879_147480019_147482415
81528	chr5	+	2810	12	NIC	ENSMUSG00000029482.5	novel	3239	18	NA	NA	-2919	-12	intron_retention	FALSE	canonical	3	101	junction_1	12.9831422803216	1	44	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGTACAAGTGCAGTACG	NA	False	NA	NA	False	NA	NA	NA	125580293	125594462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
81529	chr9	-	3036	26	Antisense	novelGene_ENSMUSG00000032481.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	73	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCAGCTTTGAAATCCAT	NA	False	NA	NA	False	NA	NA	NA	110067091	109968648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_109968702_109976111_109976192_109978995_109979093_109982845_109982910_109986341_109986412_109993867_109993945_109996672_109996797_110000011_110000135_110002947_110003073_110004108_110004166_110006532_110006583_110011994_110012111_110012883_110012957_110014890_110015003_110015823_110015976_110016945_110017060_110019968_110020036_110025231_110025479_110026695_110026858_110031569_110031625_110033277_110033392_110035063_110035220_110042574_110042710_110050993_110051223_110063942_110064122_110066886
81530	chr4	+	1346	4	Antisense	novelGene_ENSMUSG00000003032.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	640	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTTAAAAATTGAGTACA	NA	False	NA	NA	False	NA	NA	NA	55527142	55535451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_55528303_55529719_55529883_55529998_55530009_55535438
81531	chr4	+	4602	8	FSM	ENSMUSG00000028863.14	ENSMUST00000184205.8	1054	8	-20	-3528	-7	4	multi-exon	FALSE	canonical	3	93	junction_6	102.612805025016	1036	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTGATACTGAAATTGTG	NA	False	NA	NA	False	NA	NA	NA	124978936	125007035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001444_125001503_125002115_125002150_125003091
81532	chr1	+	1956	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	-50	4	-50	-4	multi-exon	FALSE	canonical	3	184	junction_2	12.7104506432917	515	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTAAAAATGTTCCTCTGT	NA	False	NA	NA	False	NA	NA	NA	53336203	53349464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
81533	chr3	-	5642	9	FSM	ENSMUSG00000037062.14	ENSMUST00000163279.6	3961	9	243	-1924	18	-9	multi-exon	TRUE	canonical	3	282	junction_5	25.8444868395563	192	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGAGCACTGTGCTGCTA	NA	False	NA	NA	False	NA	NA	NA	144425853	144392680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_144397294_144397660_144397890_144402614_144402716_144403138_144403229_144411273_144411367_144412358_144412493_144414993_144415123_144418347_144418490_144425742
81534	chr5	-	1647	3	NNC	ENSMUSG00000029616.10	novel	5204	3	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	421	1583	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3216	False	NA	NA	False	NA	NA	NA	121590565	121582818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121584015_121585203_121585343_121590253
81535	chr11	+	2580	10	NNC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	-27	4574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	321.065394669561	5	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAGCAACCAGAAATCGT	NA	False	NA	NA	False	NA	NA	NA	102919383	102952884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951890_102952297
81536	chr12	-	3795	9	ISM	ENSMUSG00000051166.11	ENSMUST00000223282.2	7595	44	102009	-869	-495	869	3prime_fragment	TRUE	canonical	3	28	junction_6	7.06996287118964	32	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGCACAGAATCAGAAATCC	NA	False	NA	NA	False	NA	NA	NA	98765734	98754534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_98756646_98756871_98756973_98757535_98757690_98758282_98758387_98758774_98758938_98760372_98760546_98760689_98760879_98762765_98762881_98765049
81537	chr14	-	5122	13	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	16	-77	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	94.68045674208	2	264	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATTGTCTTGTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	58127717	58070236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_58074104_58075047_58075125_58076546_58076663_58077007_58077053_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111465_58127519
81538	chr19	+	2288	5	NIC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	34	-15	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	342.275017347162	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAACTTCTCTGAATTT	1826	False	NA	NA	False	NA	NA	NA	5416802	5421539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5417239_5418449_5418559_5418644_5418754_5418922_5418971_5419953
81539	chr3	-	1009	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	51	7	23	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	48	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTAGAGTGTGGACTTT	NA	False	NA	NA	False	NA	NA	NA	130503042	130489567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
81540	chr1	+	961	3	NNC	ENSMUSG00000026238.15	novel	768	4	NA	NA	-5	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10347.5	24	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454442	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457760
81541	chr18	+	2847	3	Antisense	novelGene_ENSMUSG00000047879.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	3.5	6	23	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGACGAGGCATCTGTT	NA	False	NA	NA	False	NA	NA	NA	10039513	10047356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_10039644_10044355_10045674_10045957
81542	chr9	-	3658	2	FSM	ENSMUSG00000051705.14	ENSMUST00000051039.5	3682	2	22	2	0	-2	multi-exon	FALSE	canonical	3	38	junction_1	0	200	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGTCTCTGTCTCCT	6440	False	NA	NA	False	NA	NA	NA	59657910	59641543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_59645152_59657860
81543	chr9	-	1570	3	FSM	ENSMUSG00000051705.14	ENSMUST00000213257.2	764	3	-13	-793	3	1	multi-exon	FALSE	canonical	1	1	junction_2	9	93	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTGTGTGGTGCAT	6432	False	NA	NA	False	NA	NA	NA	59657918	59643751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_59645152_59647222_59647335_59657860
81544	chr9	-	1592	3	ISM	ENSMUSG00000051705.14	ENSMUST00000217093.2	1663	4	278	-1	262	1	3prime_fragment	FALSE	canonical	2	3	junction_2	8	20	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTGTGTGGTGCAT	6707	False	NA	NA	False	NA	NA	NA	59657643	59643751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_59645152_59647222_59647316_59657544
81545	chr9	-	1498	2	ISM	ENSMUSG00000051705.14	ENSMUST00000216329.2	1559	3	268	-1	263	1	3prime_fragment	FALSE	canonical	2	5	junction_1	0	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTGTGTGGTGCAT	6708	False	NA	NA	False	NA	NA	NA	59657642	59643751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_59645152_59657544
81546	chr1	-	6181	22	NIC	ENSMUSG00000026153.16	novel	5536	21	NA	NA	8	-13	combination_of_known_junctions	FALSE	canonical	3	22	junction_8	12.0657683733739	48	28	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGGGATAGCAATGACATT	NA	False	NA	NA	False	NA	NA	NA	24139406	24050186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_24051579_24053859_24053974_24059755_24059867_24060934_24061087_24063293_24063392_24063862_24063955_24065688_24065850_24067280_24069610_24069822_24069978_24071743_24071818_24083194_24083351_24085438_24085489_24088210_24088289_24092263_24092418_24093084_24093212_24094824_24094999_24096284_24096356_24096446_24096587_24106979_24107060_24124491_24124608_24125600_24125693_24139141
81547	chr8	-	2136	2	Antisense	novelGene_ENSMUSG00000031831.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	21	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGTTCTGTTCTATTTGTG	NA	False	NA	NA	False	NA	NA	NA	120313722	120310723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_120312336_120313198
81548	chr1	-	8505	22	Antisense	novelGene_ENSMUSG00000026131.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	35	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTCTGACTCATCTGTCT	NA	False	NA	NA	False	NA	NA	NA	34268003	34229356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_34232345_34232472_34232621_34233083_34233301_34233594_34233744_34234906_34235149_34236286_34236433_34237596_34237830_34238368_34238638_34239946_34240495_34241523_34241701_34247632_34247758_34250233_34250444_34251302_34251616_34251977_34252150_34253614_34253769_34254563_34254691_34256887_34256958_34257417_34257656_34258474_34258606_34262883_34263081_34264585_34265083_34266849
81549	chr4	-	1192	5	ISM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	6775	0	-901	0	3prime_fragment	FALSE	canonical	3	666	junction_4	58.243025333511	52	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	132998328	132993355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273
81550	chr16	-	7208	1	ISM	ENSMUSG00000048490.15	ENSMUST00000121927.8	7868	4	79215	5	29046	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	48	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACTTTGTCCTAAGATTT	2489	False	NA	NA	False	NA	NA	NA	76091500	76084292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_76084300_76091500
81551	chr4	-	7639	3	ISM	ENSMUSG00000059713.13	ENSMUST00000030606.14	5111	5	10428	4	1842	-4	3prime_fragment	FALSE	canonical	3	66	junction_1	15.5	875	98	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGCTCATTGAGCAGTCT	NA	False	NA	NA	False	NA	NA	NA	135150736	135139622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135143910_135145690_135145863_135147556
81552	chr2	-	1928	14	NNC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-8	112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	56.8487040127477	18	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	NA	False	NA	NA	NA	12424289	12352330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405831_12405888_12410670_12410732_12414811_12414892_12423969
81553	chr5	-	7689	23	FSM	ENSMUSG00000038126.18	ENSMUST00000147737.8	5959	23	-22	-1708	-1	-3	multi-exon	FALSE	canonical	3	31	junction_21	7.18368790391303	66	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTCGTGGTATCTGTG	NA	False	NA	NA	False	NA	NA	NA	124465934	124389024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_124393182_124397008_124397078_124398030_124398279_124398997_124399099_124399984_124400106_124400951_124401099_124403379_124403559_124405101_124405237_124421696_124421799_124423531_124423597_124424439_124424488_124428908_124429125_124430382_124430471_124435617_124435774_124436684_124437143_124442236_124442341_124445015_124445110_124450767_124450895_124453435_124453960_124454144_124454235_124458907_124459018_124462936_124463201_124465848
81554	chr7	+	3006	2	FSM	ENSMUSG00000054715.12	ENSMUST00000117189.2	2995	2	-9	-2	-9	2	multi-exon	FALSE	canonical	3	21	junction_1	0	134	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTCCAACATCTG	NA	False	NA	NA	False	NA	NA	NA	12631753	12643012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12631908_12640160
81555	chr16	+	3725	4	FSM	ENSMUSG00000022507.7	ENSMUST00000023150.7	4072	4	345	2	345	-2	multi-exon	FALSE	canonical	3	157	junction_3	16.3299316185545	149	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACAACAGGGGCTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	8648308	8676784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_8648550_8649184_8649266_8660831_8661108_8673657
81556	chr1	+	1138	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	272	-192	272	192	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACCGTGAACATTTTAGA	NA	False	NA	NA	False	NA	NA	NA	60743362	60744500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743400_60744500
81557	chr15	+	3393	1	Intergenic	novelGene_3312	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	87	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGCCCACCCCCACAGT	NA	False	NA	NA	False	NA	NA	NA	75750997	75754390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_75751000_75754400
81558	chr3	-	2924	3	FSM	ENSMUSG00000027809.15	ENSMUST00000149511.2	3740	3	-158	974	-13	-974	multi-exon	FALSE	canonical	3	110	junction_1	0	48	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTTCAGACACACACCAAA	3571	False	NA	NA	False	NA	NA	NA	79536183	79527847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_79530275_79530847_79530986_79535824
81559	chr11	-	1414	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-73	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	4165.33451357751	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACCGTGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	69563143	69558120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558596_69558843_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
81560	chr8	+	2380	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	173	-7	-38	7	multi-exon	FALSE	canonical	3	198	junction_1	0	1181	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTTATGTATGTCAGT	NA	False	NA	NA	False	NA	NA	NA	3726471	3731262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_3726604_3729014
81561	chr18	+	446	5	NNC	ENSMUSG00000024608.12	novel	597	5	NA	NA	173	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	11701.1630698619	3	18	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTAAGCTATTTTGGTT	NA	False	NA	3	True	NA	NA	NA	60909483	60911606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_60909624_60910001_60910036_60910072_60910164_60910884_60910962_60911502
81562	chr11	-	1909	10	NIC	ENSMUSG00000001054.10	novel	1946	10	NA	NA	-36	-1	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	86.561474622888	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGATTGCATGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	51526616	51514498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_51514974_51515055_51515211_51515301_51515474_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
81563	chr4	-	2226	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	-70	-868	-8	293	multi-exon	TRUE	canonical	2	32	junction_8	172.260640876149	151	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAAACTTGTTCGGGAT	9574	False	NA	NA	False	NA	NA	NA	119177751	119163488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
81564	chr4	-	1910	6	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	21606	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	746.392497282763	2	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAGTGAGCCTGAAGGT	NA	False	NA	NA	False	NA	NA	NA	137063404	137047016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137047943_137048019_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285
81565	chr12	-	3644	7	NIC	ENSMUSG00000021118.8	novel	1583	9	NA	NA	0	-12	intron_retention	FALSE	canonical	3	37	junction_4	9.84462628374824	3	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCCCTGACTGTTATGG	NA	False	NA	NA	False	NA	NA	NA	78953738	78935476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_78936082_78936685_78936765_78938902_78941350_78941646_78941739_78942905_78943088_78946828_78946994_78953664
81566	chr17	-	860	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	-29	879	-29	-879	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCAGAAGGATGGGAAAGG	NA	False	NA	NA	False	NA	NA	NA	56490949	56483622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
81567	chr17	+	2257	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	2	26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	278.148983717103	1	88	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTGGGCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	32255385	32279573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264958_32266647_32266706_32267526_32267613_32268399_32268456_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
81568	chr17	+	2211	14	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	10	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	288.484532416882	1	126	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAATTATAACTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	32255412	32279559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32272776_32272933_32274873_32274972_32275529_32276231_32277497_32277635_32278247_32278312_32279321
81569	chr17	-	2107	14	Antisense	novelGene_ENSMUSG00000058392.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGATCCGGACTGCGTCT	5241	False	NA	NA	False	NA	NA	NA	32279485	32255401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_32255576_32264899_32264980_32266641_32266713_32267531_32267612_32268398_32268460_32268920_32269051_32270117_32270185_32270656_32270821_32271712_32271800_32272828_32272948_32275522_32276228_32277495_32277631_32278241_32278310_32279319
81570	chr17	+	2238	15	NIC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-1	-1236	combination_of_known_junctions	FALSE	canonical	2	7	junction_11	178.353252431968	1	45	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGGGTGGCCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	32255382	32278311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274290_32274884_32274972_32275529_32276231_32277497_32277639_32278247
81571	chr6	-	7100	12	FSM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	-18	0	-18	0	multi-exon	FALSE	canonical	3	82	junction_10	9.34552529156102	184	106	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCCTGGTCTTTAAATC	NA	False	NA	NA	False	NA	NA	NA	37419099	37304189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
81572	chr11	+	5196	43	NNC	ENSMUSG00000034427.18	novel	9340	64	NA	NA	-517	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	5.02403520143076	20	58	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCCAAGAAAAGATTGTGT	1013	False	NA	NA	False	NA	NA	NA	115767824	115783406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115767920_115768570_115768622_115768923_115768982_115769137_115769269_115770383_115770480_115770576_115770813_115770894_115771074_115771261_115771335_115772007_115772170_115772329_115772431_115772526_115772604_115772722_115772805_115773034_115773134_115773232_115773337_115773638_115773825_115774031_115774111_115774242_115774345_115774432_115774734_115774823_115774912_115775005_115775232_115775901_115776015_115776219_115776280_115776846_115776923_115777016_115777136_115777216_115777336_115777409_115777552_115777687_115777800_115777887_115778031_115778390_115778534_115778692_115778757_115778847_115778921_115779237_115779315_115780691_115780763_115780847_115780964_115781062_115781158_115781277_115781356_115781440_115781538_115781648_115781795_115781930_115782050_115782326_115782461_115782630_115782765_115782873_115783015_115783108
81573	chr16	-	3137	6	FSM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	73	868	73	-868	multi-exon	FALSE	canonical	3	769	junction_1	115.541161496672	448	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACATATGGTCATACATG	NA	False	NA	NA	False	NA	NA	NA	31094022	31071222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31073552_31077154_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
81574	chr13	-	3811	15	Antisense	novelGene_ENSMUSG00000114418.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	164	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAGAATAGTCCTCTAAA	3922	False	NA	NA	False	NA	NA	NA	112870206	112797323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_112797405_112806118_112806264_112822597_112822732_112825805_112825929_112826055_112826118_112826690_112826791_112831778_112831941_112834512_112834576_112837988_112838184_112840069_112840178_112850672_112850786_112859733_112859844_112862578_112862726_112865727_112865820_112868030
81575	chr12	-	4013	7	ISM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	3	11	3	-11	intron_retention	FALSE	canonical	3	68	junction_3	10.4947076609541	157	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAACAAAGTATCAACACT	NA	False	NA	NA	False	NA	NA	NA	111780272	111769637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494
81576	chr7	-	2850	1	FSM	ENSMUSG00000000948.17	ENSMUST00000191456.2	3937	1	-270	1357	-14	-1357	mono-exon	FALSE	NA	NA	NA	NA	NA	67	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATAAAACAATTCTTAATC	NA	False	NA	NA	False	NA	NA	NA	59630694	59627844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_59627800_59630700
81578	chr4	-	2470	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	-6	-966	-6	966	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	544	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATCTTAAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	106924071	106912104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
81580	chr2	-	2744	6	FSM	ENSMUSG00000035949.16	ENSMUST00000113078.8	1872	6	275	-1147	14	323	multi-exon	FALSE	canonical	3	260	junction_4	77.1403914949879	104	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAATCTAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	34712918	34694202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569
81581	chr11	+	3076	16	Fusion	ENSMUSG00000020818.17_ENSMUSG00000090266.11	novel	3298	13	NA	NA	1013	-7	multi-exon	TRUE	non_canonical	0	0	junction_1	34.6057156486549	279	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAGAAGGAAAGAGTATTT	NA	False	NA	NA	False	NA	NA	NA	116740739	116765531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_116741183_116741683_116741788_116742846_116743188_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
81582	chr3	-	2411	14	NIC	ENSMUSG00000028099.9	novel	2390	15	NA	NA	43	0	intron_retention	FALSE	canonical	3	175	junction_5	22.7614331762454	899	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	96634901	96618838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631369_96633149_96633316_96634664
81584	chr12	-	4951	13	Fusion	ENSMUSG00000021245.16_ENSMUSG00000008822.16	novel	4699	13	NA	NA	224	-39	multi-exon	FALSE	non_canonical	0	0	junction_1	30.9259869149986	19	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAGAGGTGAATGTTTCTA	4644	False	NA	NA	False	NA	NA	NA	85326856	85281342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_85281411_85281904_85282504_85284288_85284441_85287571_85287651_85287733_85287758_85292536_85292697_85294385_85294498_85297075_85297148_85305966_85306040_85307573_85307679_85308434_85308527_85312925_85316249_85326764
81585	chr11	+	3196	5	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	687	-10	intron_retention	FALSE	canonical	3	129	junction_1	17.4266319178434	30	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTATGCTTTGGTG	8463	False	NA	NA	False	NA	NA	NA	58198684	58205429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
81586	chr1	-	3378	17	ISM	ENSMUSG00000026608.14	ENSMUST00000085678.8	3706	18	5895	4	-4229	-4	3prime_fragment	FALSE	canonical	3	162	junction_13	21.3395173328733	178	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGTGTCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	188734142	188703295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_188704881_188706262_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596_188728738_188729158_188729240_188729473_188729533_188732449_188732524_188733539_188733586_188734101
81587	chr8	+	4138	1	ISM	ENSMUSG00000040396.13	ENSMUST00000139793.8	5191	3	10307	4	10297	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	80	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGTAGTGAGTCTTATTC	NA	False	NA	NA	False	NA	NA	NA	10038013	10042151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_10038000_10042200
81588	chr2	-	2633	7	NNC	ENSMUSG00000039804.16	novel	3179	8	NA	NA	-8418	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.2759235089854	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGACCTGTGCTAATCTT	16	True	NA	NA	False	NA	NA	NA	164855001	164842282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164843584_164843790_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755
81589	chr3	-	2209	8	NNC	ENSMUSG00000038975.15	novel	1418	8	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_3	371.349167336663	1	142	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6162	False	NA	NA	False	NA	NA	NA	153618584	153612925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614980_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561
81590	chr7	-	1386	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	1	212	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	371.218746865903	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	NA	False	NA	NA	NA	46569684	46539121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558712_46560492_46560559_46563125_46563211_46569568
81591	chr12	+	3406	3	NNC	ENSMUSG00000073000.4	novel	1598	4	NA	NA	1	83	intron_retention	FALSE	non_canonical	0	0	junction_2	22	89	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATAATAGTGCTCTATCT	NA	False	NA	NA	False	NA	NA	NA	76491271	76498193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76491440_76494748_76496082_76496288
81592	chr9	-	298	1	Antisense	novelGene_ENSMUSG00000035202.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTGTATTCCTACTGAAA	NA	False	NA	NA	False	NA	NA	NA	123291252	123290954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_123291000_123291300
81593	chr6	+	2389	8	Antisense	novelGene_ENSMUSG00000048930.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	72	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGCCTGGCACAGAAGTG	9733	False	NA	NA	False	NA	NA	NA	113343051	113354328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_113344141_113347181_113347371_113347901_113348009_113349237_113349343_113349425_113349568_113351739_113352221_113352800_113353028_113354279
81594	chr17	-	4368	29	FSM	ENSMUSG00000038838.16	ENSMUST00000043674.15	4425	29	35	22	-8	-1	multi-exon	FALSE	canonical	0	0	junction_15	44.4260449442414	102	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGGTTAGCATTGAAAGA	1796	False	NA	NA	False	NA	NA	NA	35978449	35966547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
81595	chr6	+	3831	13	NIC	ENSMUSG00000053460.9	novel	2929	15	NA	NA	-6	-6	combination_of_known_junctions	FALSE	canonical	1	5	junction_3	16.3732505426789	4	95	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCACTACCTGGCTTAT	1308	False	NA	NA	False	NA	NA	NA	72391317	72407689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72391433_72391654_72391826_72394837_72396250_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
81596	chr8	-	2163	6	NNC	ENSMUSG00000031683.17	novel	3792	5	NA	NA	44	-130	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	468.258731899364	646	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTTTTTTTAACTGTA	NA	False	NA	NA	False	NA	NA	NA	79547725	79533209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_79534875_79536575_79536690_79536832_79536964_79539604_79539710_79546615_79546715_79547676
81597	chr19	+	3717	18	NIC	ENSMUSG00000024924.15	novel	4895	17	NA	NA	-91	519	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	9.17496216863305	38	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCTAGGAACTTAACAGAA	NA	False	NA	NA	False	NA	NA	NA	27194328	27227781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_27194349_27207595_27207716_27212189_27212313_27213639_27213763_27215452_27215825_27215909_27216033_27216123_27216247_27217021_27217142_27217244_27217371_27217865_27218038_27218634_27218854_27220464_27220584_27221157_27221298_27221598_27221741_27222934_27223082_27224409_27224491_27225256_27225427_27226504
81598	chr18	+	1532	4	FSM	ENSMUSG00000090000.3	ENSMUST00000136800.2	1503	4	-28	-1	0	1	multi-exon	FALSE	canonical	3	14	junction_2	763.929461548789	3082	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATTAAGCGTCTGATTTA	NA	False	NA	NA	False	NA	NA	NA	77017712	77029302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77017913_77018319_77018456_77027263_77027366_77028208
81599	chr18	-	5886	30	NNC	ENSMUSG00000024566.11	novel	5357	30	NA	NA	23	505	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	40.9730632780566	62	80	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGGGTGGGTGGATGGA	9795	False	NA	NA	False	NA	NA	NA	80977224	80776850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_80779365_80780026_80780060_80781867_80782072_80782961_80783020_80793033_80793143_80795972_80796038_80796206_80796363_80797163_80797229_80797459_80797605_80799668_80799759_80801509_80801609_80805276_80805450_80806088_80806173_80808237_80808331_80808985_80809148_80820012_80820262_80822077_80822191_80838504_80838648_80851826_80851988_80879569_80879647_80887741_80887818_80890386_80890468_80901758_80901854_80912956_80913009_80920529_80920583_80935027_80935139_80952806_80952921_80956011_80956163_80960919_80961094_80977038
81600	chr9	+	734	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	334	4	112	-4	multi-exon	FALSE	canonical	3	8868	junction_1	0	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTGTTTGTGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	108216586	108217538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108216758_108216975
81601	chr6	-	4461	3	ISM	ENSMUSG00000051343.12	ENSMUST00000204087.2	6119	6	32273	8	-724	-8	3prime_fragment	FALSE	canonical	3	103	junction_1	16.5	104	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTACCGCAGCCAGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	85319343	85311956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_85314209_85314462_85314653_85317324
81602	chr16	+	2049	4	Antisense	novelGene_ENSMUSG00000071533.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTCAGCGCTGCGACTG	NA	False	NA	NA	False	NA	NA	NA	55835871	55844711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_55837683_55838836_55838888_55842415_55842476_55844584
81603	chr1	+	2423	2	Antisense	novelGene_ENSMUSG00000026235.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	90	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCTCCATTCAGGATT	NA	False	NA	NA	False	NA	NA	NA	77343936	77349597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77346308_77349545
81604	chr10	-	2303	13	FSM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	54	2	0	-2	multi-exon	FALSE	canonical	3	159	junction_10	17.7080882335979	489	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCGCCTATTTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	30476691	30410222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
81605	chr1	+	4300	18	FSM	ENSMUSG00000026510.11	ENSMUST00000117245.2	4361	18	59	2	59	-2	multi-exon	FALSE	canonical	3	97	junction_1	10.65761582562	83	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTATTTCCTGGTTTTCC	NA	False	NA	NA	False	NA	NA	NA	182236795	182289995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_182237016_182256458_182256607_182259123_182259238_182262916_182263000_182264462_182264565_182268401_182268577_182269186_182269369_182269697_182269863_182270197_182270427_182271889_182271998_182272225_182272375_182273838_182274302_182275965_182276745_182280219_182280358_182281262_182281397_182283261_182283429_182286324_182286525_182289251
81606	chr5	-	3774	5	Antisense	novelGene_ENSMUSG00000033623.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCATGCGCAGTGTGTGG	9204	False	NA	NA	False	NA	NA	NA	108651598	108609142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_108609226_108635694_108635789_108643697_108643835_108647489_108647572_108648220
81607	chr6	+	4583	10	FSM	ENSMUSG00000003452.16	ENSMUST00000003544.14	2928	10	-339	-1316	21	228	multi-exon	FALSE	canonical	1	1	junction_8	8.20568908339411	25	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTCCTCAGTTCTCAA	256	False	NA	NA	False	NA	NA	NA	149310587	149459545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420722_149421850_149422045_149451847_149451924_149458141
81608	chr2	+	1989	5	NNC	ENSMUSG00000039262.17	novel	4837	29	NA	NA	6596	1283	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	211.491134565967	1	103	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGAAGTGACCGAGTCCTC	NA	False	NA	NA	False	NA	NA	NA	32116375	32122457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32116399_32116956_32117049_32119274_32119357_32120620_32121284_32121328
81609	chr7	-	1603	3	NNC	ENSMUSG00000070436.13	novel	828	4	NA	NA	-57	-38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	704.5	76	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATAGGTGTGTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	99002503	98994639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_98995479_98998151_98998672_99002259
81610	chr16	+	4892	5	ISM	ENSMUSG00000022883.12	ENSMUST00000023600.8	7563	29	358905	0	15633	0	3prime_fragment	FALSE	canonical	3	62	junction_4	4.74341649025257	77	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCCTTCCTTGTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	72818941	72842983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
81611	chr10	+	1504	2	ISM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	143	507	143	-431	intron_retention	FALSE	canonical	3	8357	junction_1	0	1	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAACTTTACCAAGGTAAG	798	False	NA	NA	False	NA	NA	NA	79889464	79891766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79889550_79890347
81612	chrX	-	6213	29	NIC	ENSMUSG00000064127.14	novel	6963	31	NA	NA	5621	-8	combination_of_known_junctions	TRUE	canonical	3	25	junction_7	19.0882416525922	75	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAACTACCAACTCTCTT	NA	False	NA	NA	False	NA	NA	NA	12622691	12541615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_12543891_12546482_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667
81613	chr17	+	2952	2	ISM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	-23	29124	-23	-4539	5prime_fragment	FALSE	canonical	3	53	junction_1	0	82	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGCTGGCTTCTCAT	NA	False	NA	NA	False	NA	NA	NA	15616440	15624576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_15616823_15622006
81614	chr1	+	2629	8	FSM	ENSMUSG00000026696.16	ENSMUST00000132158.8	2752	8	115	8	3	-2	multi-exon	FALSE	canonical	3	16	junction_7	107.103040220574	64	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGTAAGCACTGTGGC	NA	False	NA	NA	False	NA	NA	NA	162398198	162426645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162424617
81615	chr6	-	1912	4	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	-258	1	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	336	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTCCTGTGGATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	134875146	134846054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
81616	chr5	-	3867	12	Antisense	novelGene_ENSMUSG00000032898.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	149	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCTGTGCGGGCGGGCGC	7179	False	NA	NA	False	NA	NA	NA	118148245	118114844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_118115103_118115920_118116057_118117803_118117899_118124161_118124284_118126840_118126988_118127186_118127323_118128864_118129004_118132545_118132725_118133432_118133564_118138398_118138592_118140077_118140236_118146072
81618	chr13	-	3395	3	NNC	ENSMUSG00000118537.2	novel	1609	2	NA	NA	27	-331	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACATTTTTAATGACTTAA	NA	False	NA	NA	False	NA	NA	NA	104314920	104310560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104311654_104312192_104312215_104312640
81619	chr16	+	3248	9	NIC	ENSMUSG00000022724.16	novel	2159	10	NA	NA	1	1223	combination_of_known_splicesites	FALSE	canonical	2	2	junction_4	85.9977288944307	8	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAAGATAGAAATTTCAGA	NA	False	NA	NA	False	NA	NA	NA	59292167	59314047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
81620	chr19	+	5617	12	NNC	ENSMUSG00000025078.10	novel	8591	11	NA	NA	458	-2464	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	30.3009696269043	76	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTCGTCTCCCAAACT	NA	False	NA	NA	False	NA	NA	NA	56537150	56589471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_56537293_56540190_56540344_56558847_56559304_56563189_56563312_56564586_56564717_56576601_56576702_56580007_56580240_56580824_56580948_56582091_56582299_56583231_56583452_56585687_56588122_56588173
81621	chr17	-	4602	10	ISM	ENSMUSG00000052105.18	ENSMUST00000145347.8	5463	12	6194	15	-785	-15	3prime_fragment	FALSE	canonical	3	146	junction_3	25.6923873050384	123	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCCTTACAAGAAAGCAAC	7353	False	NA	NA	False	NA	NA	NA	66686711	66643997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_66645150_66649820_66651361_66653348_66653381_66655237_66655517_66661117_66661373_66665016_66665185_66673338_66673537_66675224_66675456_66684847_66685007_66686123
81622	chr14	+	4532	11	NIC	ENSMUSG00000095463.9	novel	1842	12	NA	NA	-81	460	intron_retention	FALSE	canonical	3	160	junction_7	21.4653208687874	5	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTTGAAAACAGACTTGAC	NA	False	NA	NA	False	NA	NA	NA	69584954	69604125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
81624	chr2	+	1425	5	ISM	ENSMUSG00000001999.16	ENSMUST00000135529.8	772	7	8257	2590	-1341	-111	internal_fragment	FALSE	canonical	3	9	junction_1	77.7656736613269	45	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATTTATTAAAGGTTCAC	NA	False	NA	NA	False	NA	NA	NA	126920855	126929679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_126920998_126922449_126922579_126924851_126924971_126927882_126928003_126928764
81625	chr7	-	1942	18	NNC	ENSMUSG00000030720.17	novel	3203	18	NA	NA	-113	-6	intron_retention	FALSE	non_canonical	0	0	junction_8	68.6763635217707	1	94	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTACCCTCTGCCCTTCTA	NA	False	NA	NA	False	NA	NA	NA	126183592	126171299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174709_126176980_126177094_126178344_126178489_126178572_126178661_126179334_126179402_126179504_126179585_126179964_126180037_126180571_126180629_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345_126183453_126183539
81627	chr11	+	2256	2	ISM	ENSMUSG00000018379.18	ENSMUST00000107920.10	1209	5	1239	-1083	-370	3	intron_retention	FALSE	canonical	3	1111	junction_1	0	28	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGTTGTCCTTTTTCC	7919	False	NA	NA	False	NA	NA	NA	87939867	87942319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_87940042_87940237
81628	chr3	+	939	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1786.0104814922	238	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3587	False	NA	NA	False	NA	NA	NA	88486944	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494182_88495206
81629	chr6	+	5246	11	ISM	ENSMUSG00000030104.10	ENSMUST00000089162.5	5817	12	8070	7	334	-7	3prime_fragment	FALSE	canonical	3	297	junction_4	21.9155196151038	127	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTTGTCACTGTG	8024	False	NA	NA	False	NA	NA	NA	108813704	108836302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_108813774_108818560_108818665_108819887_108820060_108821787_108821972_108823632_108823808_108825670_108825792_108826355_108826527_108828170_108828245_108829450_108829548_108831205_108831410_108832427
81630	chr15	-	1995	8	NIC	ENSMUSG00000115987.2	novel	941	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	892	junction_7	97.0594179471776	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9623	False	NA	NA	False	NA	NA	NA	76510254	76506308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76508376_76508647_76508686_76508791_76509406_76510188
81631	chr4	-	1798	17	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	46	-801	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	234.022835424238	2	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCTTTCCAGCAGGCCA	283	False	NA	NA	False	NA	NA	NA	41275070	41195993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206241_41227247_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
81632	chr1	-	1615	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	3	2762	3	534	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTATCCCTGTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	165064509	165042616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
81633	chr9	+	5118	16	Genic_Genomic	ENSMUSG00000111738.2_ENSMUSG00000111748.2	novel	4070	3	NA	NA	-1031	23943	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTCTTCCGCATTTG	NA	False	NA	NA	False	NA	NA	NA	37185524	37259675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_37187864_37188654_37188778_37190262_37190412_37190869_37191047_37214175_37214282_37215608_37215702_37222613_37222725_37224672_37224795_37225581_37225648_37226453_37227184_37227703_37227823_37231691_37231807_37253731_37253917_37255178_37255330_37259033_37259220_37259329
81634	chr6	-	2569	12	FSM	ENSMUSG00000055799.14	ENSMUST00000069536.12	3042	12	476	-3	174	3	multi-exon	FALSE	canonical	3	205	junction_8	63.9987086646582	314	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCTGGATGTTTCTTTA	5299	False	NA	NA	False	NA	NA	NA	72765761	72603357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72604777_72606938_72607015_72607994_72608103_72608197_72608358_72608938_72609080_72609909_72609994_72610198_72610302_72611082_72611216_72626102_72626187_72765193_72765322_72765544_72765609_72765692
81636	chr8	-	2534	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	8	-9	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	87.915797784016	28	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATACCTGACAGAAACAAA	NA	False	NA	NA	False	NA	NA	NA	22675827	22658184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665812_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
81637	chr9	-	3684	19	ISM	ENSMUSG00000043987.19	ENSMUST00000213154.2	6105	32	41686	-1133	-9510	-167	3prime_fragment	FALSE	canonical	3	25	junction_18	14.6457131468647	17	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCTTTAGATATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	45693339	45678422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45693249
81638	chr15	+	2165	4	FSM	ENSMUSG00000022587.15	ENSMUST00000051698.14	2281	4	115	1	0	1	multi-exon	FALSE	canonical	3	397	junction_1	104.416899441081	2194	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGGCCCTTAGACTTTT	7920	False	NA	NA	False	NA	NA	NA	74827034	74831753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_74827567_74829625_74829727_74830117_74830238_74830341
81639	chr10	+	1729	12	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	-20	3	intron_retention	FALSE	non_canonical	0	0	junction_9	604.784327380123	23	53	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1541	False	NA	NA	False	NA	NA	NA	79690418	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696808_79698241_79698376_79698486_79698614_79700047
81640	chr14	+	1916	1	NIC	ENSMUSG00000000959.8	novel	1438	3	NA	NA	1474	-61	mono-exon	FALSE	NA	NA	NA	NA	NA	70	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGGCAGTTATGGGCAT	NA	False	NA	NA	False	NA	NA	NA	54599975	54601891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_54600000_54601900
81643	chr4	+	3192	2	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	9	163608	intron_retention	TRUE	non_canonical	0	0	junction_1	0	76	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACTCTGTAGACCAGGC	NA	False	NA	NA	False	NA	NA	NA	145397263	145594619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145400345_145594508
81644	chr1	-	679	1	NIC	ENSMUSG00000073538.11	novel	766	4	NA	NA	2	-7306	mono-exon	FALSE	NA	NA	NA	NA	NA	32	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATAGTAAATGCAGTCT	NA	False	NA	NA	False	NA	NA	NA	153289977	153289298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_153289300_153290000
81646	chr4	-	1596	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	-9	9	0	-9	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	1734	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTGCAGCCTTCGTCT	NA	False	NA	NA	False	NA	NA	NA	155170839	155158575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
81647	chr11	-	3378	1	Antisense	novelGene_ENSMUSG00000049811.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTCTCCGATTCTGCTC	8561	False	NA	NA	False	NA	NA	NA	22973710	22970332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_22970300_22973700
81648	chr8	-	2622	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	190.558535771966	3	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATATGGTTGTGACTGATG	NA	False	NA	NA	False	NA	NA	NA	40964770	40945584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40947157_40948809_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
81649	chr2	+	2692	7	NNC	ENSMUSG00000027479.15	novel	7336	7	NA	NA	1374	-5977	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	432.285174650048	1	88	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAAATATGCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	153584895	153609253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153586375_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
81650	chr11	-	885	8	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4866.46497858097	1	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTAGACACCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563143	69558106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559478_69561753_69561803_69563104
81651	chr1	-	1316	4	NIC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	31	-554	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	2137.5812395218	5	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7327	False	NA	NA	False	NA	NA	NA	160040414	160030490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_160031294_160032537_160032636_160035948_160036166_160040216
81653	chr9	-	3488	22	NNC	ENSMUSG00000057969.16	novel	3410	21	NA	NA	35	82	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	20.0724312013036	124	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATACTGGCTGTTGTGGGC	4402	False	NA	NA	False	NA	NA	NA	107486357	107475333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107476375_107476775_107476916_107477001_107477058_107477148_107477307_107477528_107477571_107477652_107477745_107478026_107478247_107478556_107478702_107478782_107478853_107478958_107479071_107479158_107479305_107480072_107480193_107480320_107480415_107480495_107480616_107481005_107481069_107481241_107481400_107482167_107482355_107482645_107482787_107483748_107483854_107483952_107484134_107484232_107484292_107486319
81654	chr9	+	1771	5	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	54	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	645.959944578609	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTATTCTCTTGTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	108183691	108215137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108212194_108212381_108213846
81656	chr6	+	3230	10	NIC	ENSMUSG00000030180.16	novel	10944	28	NA	NA	9459	500	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	10.2089285540757	13	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTTCATCAGAGGATGT	NA	False	NA	NA	False	NA	NA	NA	120392222	120417172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_120392316_120395519_120395700_120396360_120396523_120403774_120404327_120404689_120404834_120405178_120405339_120407020_120407242_120408773_120409185_120415404_120415487_120415947
81657	chr18	+	1419	6	NNC	ENSMUSG00000001383.10	novel	2310	6	NA	NA	57	784	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	273.225474654176	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACATTGTTTGGTGACAA	6673	False	NA	NA	False	NA	NA	NA	36926985	36931920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36927013_36927349_36927444_36928093_36928218_36929124_36929164_36929551_36929698_36930931
81658	chr16	-	3735	2	Intergenic	novelGene_3576	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	0	46	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTGGTGATAGCAGGCC	NA	False	NA	NA	False	NA	NA	NA	7769527	7764701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_7768423_7769513
81659	chr4	+	3916	13	NIC	ENSMUSG00000095567.9	novel	2945	18	NA	NA	1530	-184	intron_retention	FALSE	canonical	0	0	junction_2	543.36050545553	103	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTTTGTTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	156323205	156331876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325959_156326117_156326258_156327022_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
81660	chr9	+	2848	7	Antisense	novelGene_ENSMUSG00000053070.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	300	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCACGTTCAGGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	8020434	8042843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_8022545_8023899_8023968_8025962_8026134_8027099_8027268_8037459_8037533_8042406_8042490_8042668
81661	chr11	+	1026	6	FSM	ENSMUSG00000018286.7	ENSMUST00000018430.7	798	6	-19	-209	0	0	multi-exon	FALSE	canonical	3	5742	junction_5	304.149305440601	20510	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTGTTCTGCCTGCAT	NA	False	NA	NA	False	NA	NA	NA	70416192	70418684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418004_70418150_70418262
81662	chr15	+	1677	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	-9	7	-9	-7	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	18307	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGGCTCCTTTGTGTCAT	NA	False	NA	NA	False	NA	NA	NA	81350487	81360563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
81663	chr10	-	3844	14	Intergenic	novelGene_3508	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	96	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGAGTCCAGCGGCGGTTC	3691	False	NA	NA	False	NA	NA	NA	94033045	93983744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_93983964_93992767_93992840_93998109_93998305_93999588_93999668_94001277_94001460_94003271_94003425_94003502_94003588_94006907_94007094_94007837_94007999_94017354_94017473_94024007_94024148_94026477_94026618_94028695_94028800_94031035
81664	chrUn_MU069435v1	+	2340	3	Intergenic	novelGene_4773	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	216	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGAATGAACGAATGAATG	NA	False	NA	50	True	NA	NA	NA	1190	3828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_1306_1498_1916_2020
81665	chr5	-	3181	18	FSM	ENSMUSG00000028771.14	ENSMUST00000030556.8	3280	18	149	-50	-9	50	multi-exon	FALSE	canonical	3	41	junction_17	13.1951023733656	122	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATATTTGTGCATCTGTG	NA	False	NA	NA	False	NA	NA	NA	21260760	21191592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_21192493_21194004_21194107_21196391_21196423_21197706_21197775_21198227_21198297_21202780_21203755_21206269_21206356_21207420_21207517_21207614_21207693_21210346_21210414_21214439_21214583_21216682_21216743_21219691_21219764_21220708_21220748_21224210_21224307_21227015_21227093_21234773_21234883_21260646
81666	chr3	+	2863	14	NNC	ENSMUSG00000027865.11	novel	3008	14	NA	NA	-44	-10	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	26.8632301872778	153	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTAAAGGAATTCTATAA	NA	False	NA	NA	False	NA	NA	NA	100069789	100114287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_100069940_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
81667	chr16	+	5119	28	ISM	ENSMUSG00000022957.21	ENSMUST00000056482.14	5364	29	52788	18	-2	-14	3prime_fragment	FALSE	canonical	3	117	junction_17	26.4535205920626	64	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTTCATATAAAAGTTAGA	NA	False	NA	NA	False	NA	NA	NA	91579046	91668525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_91579109_91580950_91581044_91582175_91582240_91590494_91590656_91598414_91598595_91599922_91600020_91602980_91603082_91608977_91609042_91612289_91612428_91613732_91613846_91615295_91615559_91617338_91617489_91617566_91617708_91624748_91624837_91625081_91625222_91633948_91634077_91636503_91636731_91638376_91638499_91645609_91645858_91647693_91647854_91650582_91650789_91651460_91651544_91655096_91655264_91658081_91658128_91660144_91660267_91664907_91665026_91666505_91666698_91667080
81668	chr3	+	2303	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	0	1166	0	298	multi-exon	FALSE	canonical	3	140	junction_6	19.0283049399806	406	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAACTTCCACGTAAGAGA	NA	False	NA	NA	False	NA	NA	NA	85481425	85561763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
81669	chr13	+	2250	10	NIC	ENSMUSG00000025451.16	novel	1525	11	NA	NA	-40	-29	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	145.953569481683	3	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTTTGTTTCTTCTAAC	NA	False	NA	NA	False	NA	NA	NA	119565096	119594725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119565177_119566695_119566866_119574504_119574691_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
81670	chr7	+	2220	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	-63	-67	-16	67	multi-exon	FALSE	canonical	3	257	junction_2	3	546	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTAGACCCCAATCTCTT	NA	False	NA	NA	False	NA	NA	NA	15630032	15634290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_15630183_15631328_15631478_15632369
81671	chr1	-	3509	24	NNC	ENSMUSG00000026458.14	novel	5238	28	NA	NA	-1545	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	17.8503546373883	1	72	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTTGGACTAATTGG	NA	False	NA	NA	False	NA	NA	NA	134256549	134226113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240821_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134251816_134251949_134252248_134252333_134254221_134254357_134254553_134254701_134254995_134255188_134255737_134255828_134256030_134256106_134256381
81672	chr6	+	2020	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	41	476	-11	-476	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	18	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAATACTTTAAAAATATAT	-15	True	NA	NA	False	NA	NA	NA	17637022	17666495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
81673	chr4	+	3895	2	NNC	ENSMUSG00000028261.14	novel	2358	2	NA	NA	1370	1	intron_retention	FALSE	canonical	0	0	junction_1	0	5	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGCACATTAGCCCAC	1426	False	NA	NA	False	NA	NA	NA	24899545	24903486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_24903231_24903276
81674	chr5	-	7597	12	NNC	ENSMUSG00000051339.11	novel	10238	13	NA	NA	27328	-2613	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	7.42343842276131	17	63	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTCATGATTTTGAGTCT	5879	False	NA	NA	False	NA	NA	NA	113341774	113236801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113238891_113240280_113240364_113240967_113241111_113241831_113241951_113243455_113243631_113245463_113245705_113249324_113249444_113323070_113323206_113329919_113332584_113336151_113336240_113338469_113340063_113341626
81675	chr17	+	4422	16	NNC	ENSMUSG00000023805.18	novel	3498	23	NA	NA	16615	35452	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	65	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGAGGGCTTGACCCCG	NA	False	NA	NA	False	NA	NA	NA	6091965	6130017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6094526_6095919_6096066_6099107_6099283_6100235_6100336_6100999_6101099_6101966_6102107_6106881_6107038_6110482_6110641_6111822_6111935_6115221_6115352_6116944_6117070_6117804_6117936_6121027_6121164_6122107_6122145_6124429_6124525_6129895
81676	chr9	-	2973	6	NNC	ENSMUSG00000032298.14	novel	1170	9	NA	NA	-26	2	intron_retention	FALSE	non_canonical	0	0	junction_2	20.5757138393787	6	56	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGGTACTTCTTGGGC	NA	False	NA	NA	False	NA	NA	NA	57054344	57050081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57050611_57050734_57050914_57051460_57051599_57051921_57052022_57052228_57052293_57052381
81677	chr1	+	9850	28	NNC	ENSMUSG00000033952.15	novel	9867	28	NA	NA	0	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	29.5980387145432	130	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCCTATAATGTCACT	NA	False	NA	NA	False	NA	NA	NA	139382512	139421811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_139382943_139384477_139384622_139384774_139386183_139389163_139389269_139389509_139389657_139390793_139391040_139391973_139392042_139395655_139395798_139396355_139396487_139397073_139397250_139398175_139398322_139398409_139398496_139399308_139399531_139401275_139401484_139401575_139401719_139401982_139402112_139404444_139404641_139405083_139408879_139410075_139410243_139413437_139413526_139414944_139415155_139416125_139416276_139417383_139417576_139417701_139417895_139418036_139418192_139419255_139419433_139420444_139420615_139421385
81678	chr11	+	1817	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	2	7	2	-7	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	838	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTAGGATTGTTTTAAG	8225	False	NA	NA	False	NA	NA	NA	100978104	100983026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
81679	chr17	-	2458	3	NNC	ENSMUSG00000062859.16	novel	1978	8	NA	NA	-1539	-3740	intron_retention	FALSE	canonical	1	1	junction_2	13.5	4	27	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGAAAATGGACATGGTG	NA	False	NA	NA	False	NA	NA	NA	28295334	28289510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28290806_28293625_28293747_28294292
81680	chr3	-	3736	4	NIC	ENSMUSG00000028133.18	novel	1484	5	NA	NA	0	1	intron_retention	FALSE	canonical	3	77	junction_3	12.657891697365	23	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTGTCTGAGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	120965344	120949045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_120949707_120949835_120949952_120950049_120952905_120965240
81681	chr16	+	7695	5	ISM	ENSMUSG00000068284.15	ENSMUST00000169582.3	12604	8	27234	4611	27234	-4611	3prime_fragment	FALSE	canonical	3	10	junction_4	20.3592730715023	47	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACATTGTAAATTACATTA	NA	False	NA	-31	True	NA	NA	NA	44020993	44043215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_44021042_44022100_44022130_44025360_44025444_44033002_44033100_44035777
81682	chr15	-	3438	11	NNC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	920	-4	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_10	164.785587962054	255	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATACCCTCTGTCTGC	9258	False	NA	NA	False	NA	NA	NA	79325098	79302059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79324282
81683	chr5	-	6875	17	Intergenic	novelGene_817	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	101	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGTCACCCATGGCG	NA	False	NA	NA	False	NA	NA	NA	111435037	111330970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_111331294_111370969_111372316_111373421_111373946_111377211_111377321_111378912_111379042_111381107_111381330_111383340_111383506_111414398_111414539_111419057_111419205_111424026_111424206_111424647_111425368_111426338_111426464_111427821_111428056_111428539_111428635_111430636_111430766_111431810_111431914_111432852
81684	chr3	-	1756	10	NIC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	-24	-3	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	120.194287163187	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGACTGTCTTGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	30702042	30678418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_30679052_30684121_30684249_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
81685	chr3	+	1054	2	Genic_Genomic	ENSMUSG00000069014.5	novel	1488	1	NA	NA	8	0	multi-exon	FALSE	canonical	0	0	junction_1	0	18	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	5448	False	NA	NA	False	NA	NA	NA	54388866	54390346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_54389695_54390120
81686	chr17	+	6683	39	ISM	ENSMUSG00000033826.11	ENSMUST00000236647.2	13856	91	116350	-484	4405	484	3prime_fragment	TRUE	canonical	2	20	junction_2	15.7392182680637	61	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTTCCCATATCTAGG	NA	False	NA	NA	False	NA	NA	NA	30971079	31094722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_30971156_30971795_30971919_30973947_30974162_30975676_30975787_30977218_30977383_30978543_30978737_30979979_30980103_30981614_30981746_30984569_30984724_30986772_30986938_30988616_30988844_30990770_30990890_30992502_30992607_30993919_30994097_30997980_30998149_30998696_30998913_31001357_31001496_31003036_31003165_31003980_31004153_31006118_31006275_31009800_31009957_31013606_31013790_31019457_31019564_31022036_31022290_31022966_31023158_31026178_31026301_31029233_31029353_31032001_31032205_31034605_31034680_31037033_31037187_31038092_31038249_31049746_31049864_31052529_31052632_31059526_31059688_31070601_31070759_31073774_31073928_31074878_31075069_31090285_31090408_31093815
81687	chr1	-	2892	10	NIC	ENSMUSG00000040225.16	novel	6367	21	NA	NA	7037	3913	intron_retention	FALSE	canonical	3	85	junction_8	19.9654021735255	3	80	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACTGTGCCTTTAAACC	NA	False	NA	NA	False	NA	NA	NA	162525298	162507393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_162507627_162508328_162508466_162508789_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001
81688	chr2	-	4127	7	NIC	ENSMUSG00000027082.16	novel	3614	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	91	junction_6	47.3767406599014	10	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTATTTATGATTATT	NA	False	NA	NA	False	NA	NA	NA	84307119	84271066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
81689	chr11	-	4157	32	FSM	ENSMUSG00000057948.13	ENSMUST00000106450.8	4046	32	-115	4	76	-3	multi-exon	TRUE	canonical	3	18	junction_15	5.60845207266718	83	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAGAAAAATCTATAGTTG	NA	False	NA	NA	False	NA	NA	NA	115968691	115952924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273
81690	chr4	-	1471	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	112	1041	6	126	multi-exon	FALSE	canonical	3	625	junction_9	43.7020339182862	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCCTGGACAGTCTTTA	132	False	NA	NA	False	NA	NA	NA	48279446	48194363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
81691	chr7	-	3282	15	NNC	ENSMUSG00000039428.12	novel	3700	15	NA	NA	19	-311	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.1221685564217	1	71	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTTCTGTGAGAGATAT	NA	False	NA	NA	False	NA	NA	NA	88987926	88789232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_88791179_88793015_88793057_88793864_88793964_88797177_88797255_88800620_88800685_88803235_88803404_88805634_88805705_88808076_88808224_88814332_88814375_88845320_88845368_88893139_88893195_88929174_88929209_88953888_88953982_88956344_88956473_88987655
81692	chr7	+	3426	5	FSM	ENSMUSG00000054893.16	ENSMUST00000108562.2	3498	5	29	43	29	-43	multi-exon	FALSE	canonical	3	18	junction_1	14.0245320777557	3	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAAGTCTGTGTTCTTT	4290	False	NA	NA	False	NA	NA	NA	6290895	6310638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6290970_6292356_6292437_6293534_6293662_6296847_6296941_6307586
81693	chr5	+	3584	15	FSM	ENSMUSG00000041870.18	ENSMUST00000102578.11	3717	15	606	-473	338	95	multi-exon	FALSE	canonical	3	367	junction_6	30.6590866112599	198	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCTTGCCTTCACTGG	1452	False	NA	NA	False	NA	NA	NA	114913343	114944356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_114913386_114924001_114924135_114924745_114924871_114927368_114927415_114929324_114929469_114930160_114930351_114933741_114933809_114934894_114934977_114935913_114935976_114936581_114936713_114937444_114937603_114938765_114938874_114939716_114939878_114941617_114941686_114942289
81694	chr11	-	2022	6	NIC	ENSMUSG00000001441.14	novel	2078	16	NA	NA	1759	393	intron_retention	FALSE	canonical	3	312	junction_5	42.5694726300432	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCCAACCCCCCAAAAAGT	1501	False	NA	NA	False	NA	NA	NA	97113828	97097340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97098095_97103105_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776
81695	chr11	+	3431	10	FSM	ENSMUSG00000025792.10	ENSMUST00000144706.8	1658	10	-16	-1757	-16	1163	multi-exon	FALSE	canonical	3	78	junction_5	8.28355503094036	226	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGAACTTGCTCCTAAAC	NA	False	NA	NA	False	NA	NA	NA	120382697	120391176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120388288_120388745_120388803_120388896
81696	chr6	-	4230	1	ISM	ENSMUSG00000002413.16	ENSMUST00000002487.15	9728	22	117990	7	35781	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	56	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAAACCTTAAGATTATT	8130	False	NA	NA	False	NA	NA	NA	39584407	39580177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_39580200_39584400
81697	chr5	+	2779	5	ISM	ENSMUSG00000029592.12	ENSMUST00000031588.12	4604	13	18957	1218	8144	-1218	3prime_fragment	FALSE	canonical	3	48	junction_2	4.9180788932265	81	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACAGCCAAGTGCGGTGC	9058	False	NA	NA	False	NA	NA	NA	114257332	114261563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
81698	chr8	+	4366	2	FSM	ENSMUSG00000046794.10	ENSMUST00000210337.2	4349	2	-7	-10	-7	0	multi-exon	FALSE	canonical	3	17	junction_1	0	22	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACTATTCCTTCTATT	NA	False	NA	NA	False	NA	NA	NA	35842885	35855293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_35843096_35851137
81699	chr2	-	2483	14	FSM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	144	1809	144	-49	multi-exon	FALSE	canonical	3	25	junction_13	80.5716264093541	37	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTTTTTTCAGGA	NA	False	NA	NA	False	NA	NA	NA	60793392	60582345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
81700	chr14	-	2919	1	Intergenic	novelGene_619	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAACAAGGTCACGCCTTC	NA	False	NA	NA	False	NA	NA	NA	76756269	76753350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_76753400_76756300
81701	chr5	+	2436	11	NNC	ENSMUSG00000029131.15	novel	2918	10	NA	NA	0	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	721.586924770675	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGTCCAGCTCTCTTGT	4630	False	NA	NA	False	NA	NA	NA	29941021	29991368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958587_29958624_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
81702	chr17	+	1182	5	NIC	ENSMUSG00000044533.16	novel	998	6	NA	NA	0	-5	intron_retention	FALSE	canonical	3	3280	junction_1	3156.98942823697	99	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTATTATGTTTTTTTT	6237	False	NA	NA	False	NA	NA	NA	24939083	24940894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24939107_24939246_24939427_24939507_24940277_24940596_24940689_24940776
81703	chr2	+	5181	16	NIC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	-3	1	combination_of_known_splicesites	FALSE	canonical	3	18	junction_4	85.906046870339	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCAGTCACATTACTGA	NA	False	NA	NA	False	NA	NA	NA	156038650	156151873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
81704	chrX	+	7138	22	FSM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	83	23	16	-23	multi-exon	FALSE	canonical	3	10	junction_1	12.5162932360936	144	38	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAATAAAGTTTCAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	158038936	158151217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_158039185_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
81705	chr1	+	3817	7	FSM	ENSMUSG00000026495.9	ENSMUST00000027775.9	3580	7	-100	-137	-82	137	multi-exon	FALSE	canonical	3	53	junction_5	10.1447851956888	240	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTATAATGCCTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	178233567	178312215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_178233699_178264966_178265052_178283380_178283454_178302446_178302527_178303249_178303293_178303389_178303457_178308877
81706	chr11	-	1354	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-11	0	-11	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	5	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9930	False	NA	NA	False	NA	NA	NA	69812223	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
81707	chr17	+	3316	5	NIC	ENSMUSG00000023967.10	novel	884	6	NA	NA	12	-4	intron_retention	FALSE	canonical	3	1040	junction_4	23.6061432682258	8	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGTGTGGTCAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	46421933	46439832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_46422056_46428865_46428898_46433649_46436340_46436568_46436639_46439430
81708	chr9	+	4127	5	NNC	ENSMUSG00000032567.17	novel	2755	5	NA	NA	-21	-36	intron_retention	TRUE	canonical	0	0	junction_3	32.0195252931707	2	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTACTATACTTTTAATAC	NA	False	NA	NA	False	NA	NA	NA	105272569	105282630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_105272865_105273743_105275058_105278657_105280484_105280531_105280791_105282197
81709	chr1	+	3251	6	ISM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	12	-491	5	491	intron_retention	FALSE	canonical	3	412	junction_2	17.5795335546766	10	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTCACTTCGAGTTCGTA	NA	False	NA	NA	False	NA	NA	NA	171954333	171963341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696
81710	chr1	+	4290	7	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-20	11779	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.51168871558685	63	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTGTGTGTGCG	NA	False	NA	NA	False	NA	NA	NA	88387384	88405059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_88387883_88387930_88388039_88390701_88390815_88393237_88393528_88397558_88397777_88398642_88398830_88402183
81711	chr11	-	2725	4	ISM	ENSMUSG00000000120.7	ENSMUST00000000122.7	3446	6	9715	14	9715	-14	3prime_fragment	FALSE	canonical	3	62	junction_2	5.71547606649408	1	127	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAGCAAAAAAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	95468846	95459657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799
81712	chr7	+	674	5	NNC	ENSMUSG00000037563.16	novel	1109	5	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8741.0029458867	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050123	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28050277_28050416_28050590_28051601_28051699_28051787_28051836_28051918
81713	chr4	-	3270	6	ISM	ENSMUSG00000039410.17	ENSMUST00000030902.13	8598	17	302413	2361	399	-2361	3prime_fragment	FALSE	canonical	3	12	junction_1	4.87442304278158	39	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCAGAAAGAGCAAGGTGTG	NA	False	NA	NA	False	NA	NA	NA	154418910	154402942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_154405380_154406727_154406903_154407703_154407938_154412716_154412892_154413120_154413291_154418831
81714	chr15	-	3551	27	FSM	ENSMUSG00000022469.18	ENSMUST00000177352.8	3395	27	-93	-63	-93	0	multi-exon	TRUE	canonical	3	28	junction_8	8.251232649531	60	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGTTCTACCGCCTG	870	False	NA	NA	False	NA	NA	NA	97665036	97642833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_97643548_97644938_97645011_97645103_97645159_97646093_97646159_97646463_97646552_97647376_97647428_97647531_97647623_97647886_97648069_97648149_97648276_97648671_97648770_97651657_97651805_97652118_97652201_97654481_97654522_97655059_97655143_97655230_97655391_97655563_97655643_97655897_97655987_97656271_97656385_97656722_97656870_97657042_97657120_97657205_97657267_97657845_97657931_97658459_97658629_97658988_97659111_97659355_97659463_97659559_97659614_97664642
81715	chr15	+	2022	13	NIC	ENSMUSG00000042303.20	novel	2997	22	NA	NA	-69	182	intron_retention	FALSE	canonical	3	134	junction_5	14.497844667398	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCCTCCCATCTTTTGT	NA	False	NA	NA	False	NA	NA	NA	80892490	80896272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
81716	chr3	+	3728	7	Antisense	novelGene_ENSMUSG00000028029.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAAGGAAGGGCCAGCCTC	NA	False	NA	NA	False	NA	NA	NA	132366270	132389597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_132366506_132373148_132375682_132377445_132377948_132379724_132379891_132380509_132380624_132382765_132382898_132389551
81718	chr18	-	2865	9	NIC	ENSMUSG00000063889.17	novel	2931	9	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	28.5544983321367	106	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	-16	True	NA	NA	False	NA	NA	NA	3337585	3266355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3287903_3288093_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
81719	chr8	+	3830	15	FSM	ENSMUSG00000050079.11	ENSMUST00000060389.10	3852	15	-2	24	-2	-24	multi-exon	FALSE	canonical	3	105	junction_1	22.9280151245375	40	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCTGTTGCATTTTTTAC	8109	False	NA	NA	False	NA	NA	NA	95328562	95386879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95329059_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
81720	chr17	-	2394	10	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	116	1836	multi-exon	FALSE	canonical	2	4	junction_9	76.6967734766489	216	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCATGTTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	37300280	37278250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37278611_37278969_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546_37298823_37299826
81721	chr2	+	4485	6	Intergenic	novelGene_2739	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	160	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTGGGACAGAGAAGGCAC	8837	False	NA	NA	False	NA	NA	NA	153250449	153278269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_153253752_153258564_153258765_153259281_153259406_153259607_153260065_153262468_153262727_153278125
81722	chr18	-	3819	1	Antisense	novelGene_ENSMUSG00000009535.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	49	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGATCGGACGGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	68455311	68451492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_68451500_68455300
81723	chr13	-	1267	1	ISM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	1867	473	1867	-473	mono-exon	FALSE	NA	NA	NA	NA	NA	3	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTCCTCTTTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	34312470	34311203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_34311200_34312500
81724	chr5	-	1146	4	NNC	ENSMUSG00000032959.13	novel	1240	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1275.14783456664	13	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	NA	False	NA	NA	NA	117425662	117420718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117421531_117423785_117423874_117424252_117424310_117425473
81725	chr4	+	2492	22	Intergenic	novelGene_1832	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	89	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTACAAAGCGGCGGC	5287	False	NA	NA	False	NA	NA	NA	41196489	41275099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41196532_41196727_41196808_41199216_41199266_41199493_41199577_41199706_41199904_41201465_41201528_41202272_41202310_41205591_41205740_41206154_41206330_41206837_41207105_41209353_41209570_41211704_41211895_41216565_41216636_41218314_41218344_41221545_41221622_41223355_41223482_41227172_41227273_41229693_41229849_41233603_41233718_41235516_41235590_41251529_41251665_41275031
81726	chr2	-	2976	9	ISM	ENSMUSG00000039671.19	ENSMUST00000109266.11	5072	22	50008	8	43957	-5	3prime_fragment	FALSE	canonical	3	102	junction_8	24.3871764458291	1	131	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGATGATGGCGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	165650085	165626079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649594
81727	chr5	+	1474	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	-55	1	4	-1	multi-exon	FALSE	canonical	3	27	junction_6	172.72618021983	1	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAGTTTCATACAGACG	NA	False	NA	NA	False	NA	NA	NA	100187847	100216618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
81728	chr2	-	3978	1	ISM	ENSMUSG00000068966.11	ENSMUST00000091037.3	6510	2	18131	6	18131	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	74	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAACCTTGCTGTGGTCTC	4740	False	NA	NA	False	NA	NA	NA	33300103	33296125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_33296100_33300100
81729	chr8	-	1968	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	20	119	20	-119	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	1685	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTGTAGTCTCCTCGTG	NA	False	NA	NA	False	NA	NA	NA	79547749	79533198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
81730	chr7	-	2357	12	NIC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	0	0	intron_retention	TRUE	canonical	3	1236	junction_8	111.514221010611	733	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	NA	NA	NA	19005742	18990853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
81731	chr8	-	2079	8	NIC	ENSMUSG00000002343.12	novel	2263	8	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	30.2722341967901	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCATTTTTCTCACCT	5016	False	NA	NA	False	NA	NA	NA	70686768	70672821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686595
81732	chr6	-	1001	5	NIC	ENSMUSG00000051169.15	novel	782	6	NA	NA	-6	-36	intron_retention	FALSE	canonical	3	157	junction_4	14.6116391962025	4	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGTGCCCTGGTCCAG	NA	False	NA	NA	False	NA	NA	NA	113396307	113393785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
81733	chr12	-	2231	12	Intergenic	novelGene_4425	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	42	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGTCGCAACTTCCGGC	NA	False	NA	NA	False	NA	NA	NA	83781467	83734939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_83735067_83746126_83746194_83746283_83746424_83759075_83759329_83761537_83761678_83769762_83769832_83771268_83771490_83774998_83775097_83775469_83775556_83777308_83777488_83778449_83778566_83780732
81735	chr16	-	5080	2	FSM	ENSMUSG00000043391.11	ENSMUST00000053336.8	5164	2	50	34	14	-34	multi-exon	FALSE	canonical	3	80	junction_1	0	61	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACAATAAACGTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	21513365	21467828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21472509_21512965
81736	chr9	+	3334	8	FSM	ENSMUSG00000039285.13	ENSMUST00000044454.12	3396	8	62	0	4	0	multi-exon	FALSE	canonical	0	0	junction_7	57.0105611411838	147	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTATTTTGTGATTCA	9647	False	NA	NA	False	NA	NA	NA	117869628	117892907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117890781
81737	chr6	-	1984	8	FSM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	-56	0	-56	0	multi-exon	FALSE	canonical	3	207	junction_3	16.3245151817249	326	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	NA	False	NA	NA	NA	120508336	120486454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
81738	chr11	+	3122	11	ISM	ENSMUSG00000006169.21	ENSMUST00000109260.3	3398	12	31787	6	1354	-6	3prime_fragment	FALSE	canonical	3	378	junction_5	50.2395262716519	216	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAACGTGGGCCCGCCTC	NA	False	NA	NA	False	NA	NA	NA	45774577	45801446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_45774642_45775158_45775256_45777257_45777367_45778212_45778378_45781448_45781627_45784697_45784945_45785886_45785957_45793037_45793113_45797007_45797295_45798720_45798872_45799767
81739	chr8	+	3052	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	-69	1608	-38	131	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	1407	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTGCTATTTGGCCTTA	NA	False	NA	NA	False	NA	NA	NA	80438410	80504080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
81740	chr11	+	10344	5	FSM	ENSMUSG00000075595.10	ENSMUST00000091565.5	2663	5	-50	-7631	17	-11	multi-exon	FALSE	canonical	3	40	junction_1	15.52417469626	102	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTAGCCATATTCCCACGT	NA	False	NA	NA	False	NA	NA	NA	95639842	95663168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95640974_95643700_95643849_95644187_95644304_95644736_95644882_95654364
81741	chr11	+	4004	14	FSM	ENSMUSG00000033857.13	ENSMUST00000135383.9	4064	14	29	31	29	-31	multi-exon	FALSE	canonical	3	81	junction_11	10.2772224737595	110	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCTCAGAAATAAATTATCC	NA	False	NA	NA	False	NA	NA	NA	118367683	118380004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_118367931_118369708_118369780_118369911_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
81742	chr11	-	1906	4	NNC	ENSMUSG00000057594.13	novel	429	4	NA	NA	4	412	intron_retention	FALSE	non_canonical	0	0	junction_3	81.6999932000541	442	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCCAA	NA	False	NA	NA	False	NA	NA	NA	120358275	120355279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120356926_120357479_120357594_120358007_120358065_120358186
81743	chr10	+	7402	42	FSM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	75	283	75	-283	multi-exon	FALSE	canonical	3	60	junction_25	18.281297269701	105	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAAGCTACTCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	50468839	50727298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807_50494368_50514003_50514125_50518618_50518827_50521038_50521181_50521758_50521885_50525204_50525406_50525888_50526030_50526642_50526808_50535013_50535191_50536750_50536823_50566210_50566346_50576035_50576228_50576527_50576753_50583758_50583879_50586975_50587141_50589271_50589359_50590361_50590539_50592580_50592807_50594387_50594543_50596707_50596807_50597868_50598038_50604185_50604407_50606007_50606094_50607708_50607876_50608517_50608664_50608782_50608904_50611305_50611449_50624901_50625040_50625130_50625252_50626548_50626682_50630092_50630219_50643186_50643299_50643468_50643604_50699731_50699957_50716393_50716546_50718238_50718387_50721626_50721837_50725566_50725743_50726556
81744	chr4	-	2706	10	Antisense	novelGene_ENSMUSG00000103000.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	61	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGCCCGGCCCAGCGCG	NA	False	NA	NA	False	NA	NA	NA	22434051	22357584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_22357678_22375657_22375770_22376494_22377076_22385904_22386251_22390674_22390920_22403529_22403744_22422714_22422788_22423683_22423926_22427147_22427461_22433564
81745	chr8	+	5005	1	ISM	ENSMUSG00000052557.12	ENSMUST00000162997.3	13461	11	52856	0	52856	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	65	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTTGAATCCCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	117937731	117942736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_117937700_117942700
81746	chr3	-	5891	9	NNC	ENSMUSG00000040209.13	novel	13834	9	NA	NA	-566	4069	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_8	98.20442645319	190	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGTTGTGTGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	9675711	9499282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_9503959_9504844_9504943_9511019_9511125_9512334_9512603_9517323_9517425_9535951_9536179_9539558_9539663_9630123_9630360_9675635
81747	chr1	+	2702	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	-21	-435	-21	435	multi-exon	TRUE	canonical	3	75	junction_7	21.6248156769306	317	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTCAGACACTCCAGAAG	NA	False	NA	NA	False	NA	NA	NA	191058087	191083546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
81748	chr9	-	1803	5	NIC	ENSMUSG00000042396.11	novel	1867	6	NA	NA	-13	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	162.616112362828	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGTCTCTTTATTTTG	NA	False	NA	NA	False	NA	NA	NA	48406612	48399999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_48401289_48404706_48404795_48405318_48405482_48405582_48405688_48406454
81749	chr9	-	1649	4	NIC	ENSMUSG00000042396.11	novel	1867	6	NA	NA	25	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	195.551073180952	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	48406569	48400008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_48401289_48402147_48402239_48405318_48405482_48406454
81750	chr10	+	5067	1	FSM	ENSMUSG00000090035.4	ENSMUST00000161240.4	5089	1	-12	34	-12	-34	mono-exon	FALSE	NA	NA	NA	NA	NA	24	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAATGTATGCCTAATTA	NA	False	NA	NA	False	NA	NA	NA	98944008	98949075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_98944000_98949100
81751	chr6	-	5565	22	NNC	ENSMUSG00000030029.15	novel	4951	19	NA	NA	-21093	104203	intron_retention	TRUE	non_canonical	0	0	junction_1	58.6589357924206	208	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTACTTCCGGGGCAGAAC	NA	False	NA	NA	False	NA	NA	NA	94603467	94477306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_94477437_94484492_94484651_94487731_94487842_94511123_94511228_94512699_94512748_94569390_94569461_94575358_94575424_94576157_94576233_94580531_94582985_94583083_94583345_94584272_94584420_94585020_94585147_94585689_94586110_94586597_94586880_94588352_94588674_94590544_94590709_94593369_94593442_94594226_94594299_94597233_94597315_94599595_94599740_94601910_94602055_94603349
81752	chrX	-	2743	10	NNC	ENSMUSG00000036022.16	novel	2038	10	NA	NA	-24	-39	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.833271190576	12	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTGAATTTAATAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	52357921	52332340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_52334249_52335026_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
81753	chr17	-	2374	9	ISM	ENSMUSG00000024335.21	ENSMUST00000095347.13	2617	12	2777	-327	-242	-6	3prime_fragment	FALSE	canonical	3	364	junction_7	43.6777975635219	3	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAAGTTTTGAGTTAGTT	9889	False	NA	NA	False	NA	NA	NA	34334686	34331009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_34331683_34331829_34331953_34332150_34332456_34332543_34332807_34332905_34333152_34333323_34333453_34333863_34334239_34334335_34334551_34334641
81754	chr2	-	3264	3	ISM	ENSMUSG00000026927.18	ENSMUST00000132574.8	2095	6	268	-1	268	0	intron_retention	FALSE	canonical	3	366	junction_2	15	123	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	26277325	26272813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_26273707_26274693_26274834_26275094
81756	chr3	+	2450	4	FSM	ENSMUSG00000027963.15	ENSMUST00000106501.8	2887	4	0	437	0	-402	multi-exon	FALSE	canonical	0	0	junction_1	25.9786236911983	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGAGAAGGCAGTGGGA	10	False	NA	NA	False	NA	NA	NA	115801126	115822207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_115801532_115817655_115818084_115818973_115819045_115820661
81757	chrX	+	1905	15	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	106	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	255.924504572767	1	74	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAACCTCCCTGTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	56454619	56534128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56461126_56461221_56463018_56463155_56463564_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485072_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
81758	chr10	-	4149	6	ISM	ENSMUSG00000020132.11	ENSMUST00000020343.9	4602	7	12821	34	12821	-34	3prime_fragment	FALSE	canonical	3	420	junction_4	17.0246879560243	137	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATAATATTGAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	115138675	115123022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_115126817_115130775_115130865_115131333_115131389_115134732_115134797_115137427_115137536_115138636
81759	chr7	+	3079	1	NIC	ENSMUSG00000089847.9	novel	3273	3	NA	NA	0	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	54	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTTGTCTGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	105289757	105292836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_105289800_105292800
81760	chr6	+	5459	1	NIC	ENSMUSG00000029823.17	novel	3141	9	NA	NA	769	21	mono-exon	FALSE	NA	NA	NA	NA	NA	333	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGTAAGTTTCTGAGAG	NA	False	NA	NA	False	NA	NA	NA	38529546	38535005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_38529500_38535000
81761	chr15	-	1483	9	NIC	ENSMUSG00000115987.2	novel	911	10	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	892	junction_8	91.0971322270904	41	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTGTGGGCAGCTATAC	9621	False	NA	NA	False	NA	NA	NA	76510256	76506309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
81762	chr11	-	3193	8	Antisense	novelGene_ENSMUSG00000037992.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	101	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAAGCCCGCGCGCCCCC	NA	False	NA	NA	False	NA	NA	NA	98865759	98851275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_98851958_98857168_98857320_98858868_98859013_98860982_98861143_98861317_98861493_98862403_98862611_98863335_98863494_98864243
81763	chr11	+	1533	5	NNC	ENSMUSG00000018239.10	novel	1267	4	NA	NA	-1779	18	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_1	112.364084564419	1001	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTCTTTGTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	53213726	53224146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_53213790_53215320_53215569_53218095_53218255_53221513_53221559_53223128
81764	chr15	-	2591	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	-877	-7	-868	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	429	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGACTTAAGTGACATTC	303	False	NA	NA	False	NA	NA	NA	89314979	89310562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
81765	chr5	+	5289	4	ISM	ENSMUSG00000038970.8	ENSMUST00000041804.8	8114	14	74608	7	74608	-7	3prime_fragment	FALSE	canonical	3	45	junction_3	12.5698050899765	117	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAATCTCTGTTGCTAC	NA	False	NA	NA	False	NA	NA	NA	144111861	144125015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_144113296_144119554_144119688_144119999_144120240_144121533
81766	chr3	-	3806	23	NNC	ENSMUSG00000001052.16	novel	5128	24	NA	NA	-275	-108	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	49.8348512257658	5	100	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGCAGACAGAGTCGGTT	NA	False	NA	NA	False	NA	NA	NA	129835063	129777368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_129777656_129777811_129777920_129781335_129781429_129782544_129782650_129783297_129783436_129783943_129784120_129784979_129785091_129786623_129786798_129787378_129787538_129787917_129788042_129789562_129789770_129789989_129790046_129790329_129790449_129793160_129793274_129795953_129796064_129796588_129796716_129798642_129798746_129801059_129801245_129803310_129803544_129805433_129805522_129814186_129814292_129827479_129827624_129834322
81767	chr4	+	1885	8	FSM	ENSMUSG00000043333.13	ENSMUST00000053202.12	1217	8	-4	-664	-3	664	multi-exon	FALSE	canonical	1	1	junction_1	8.27092275778864	77	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGGGAGTGCCGGGATTAA	NA	False	NA	NA	False	NA	NA	NA	123681663	123724361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_123681765_123703706_123703970_123708035_123708185_123711656_123711770_123716549_123716651_123718653_123718715_123720630_123720693_123723326
81768	chr19	+	2814	1	NIC	ENSMUSG00000024791.11	novel	2024	6	NA	NA	111	-3870	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	14	52	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAAGTACTGACATAATA	NA	False	NA	NA	False	NA	NA	NA	6135123	6137937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6135100_6137900
81769	chr17	+	4338	1	Genic_Genomic	ENSMUSG00000046070.10	novel	NA	NA	NA	NA	-15	570	mono-exon	FALSE	NA	NA	NA	NA	NA	45	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCCCCCAAACAAGACAG	7760	False	NA	NA	False	NA	NA	NA	25097216	25101554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_25097200_25101600
81770	chr12	+	1810	12	ISM	ENSMUSG00000021144.15	ENSMUST00000069690.5	2697	20	29832	-33	-3177	0	3prime_fragment	FALSE	canonical	3	59	junction_8	185.900888905534	502	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCCCTTCTGCGTCTTT	NA	False	NA	NA	False	NA	NA	NA	113091774	113100826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113097160_113097197_113099416_113099449_113099900_113100053_113100137
81771	chr5	+	812	1	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGGAGGCAAGTACCAGC	3023	False	NA	NA	False	NA	NA	NA	117420721	117421533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117420700_117421500
81772	chr18	-	2538	7	NIC	ENSMUSG00000063889.17	novel	2778	9	NA	NA	-7	-2	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	26.6671874949138	68	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGCCTGTGTGTATGT	-27	True	NA	NA	False	NA	NA	NA	3337596	3266357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3325360_3325479_3337379
81773	chr16	+	3090	17	NIC	ENSMUSG00000022701.19	novel	3779	17	NA	NA	-22	-617	combination_of_known_junctions	FALSE	canonical	1	11	junction_1	25.4014640326104	105	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGCCTGGACTTACG	NA	False	NA	NA	False	NA	NA	NA	43710239	43784060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_43710402_43712515_43712555_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
81774	chr4	+	5700	18	NNC	ENSMUSG00000040455.18	novel	6003	18	NA	NA	-8	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	8.81529027091869	201	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTGCCTATTTTAGTTC	10	True	NA	NA	False	NA	NA	NA	21776289	21837861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234_21834536_21834667
81775	chr19	+	967	3	NNC	ENSMUSG00000037847.15	novel	1357	9	NA	NA	16384	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4.5	153	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAAATATACTGTTACA	NA	False	NA	NA	False	NA	NA	NA	18625745	18629804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_18625900_18628599_18628947_18629338
81776	chr19	-	1333	7	NNC	ENSMUSG00000024997.8	novel	1478	7	NA	NA	51	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	279.446725195022	6	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGCGTTTTTGACTTAT	1498	False	NA	NA	False	NA	NA	NA	60862943	60852507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60853119_60853639_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
81777	chr13	-	2735	1	FSM	ENSMUSG00000015672.5	ENSMUST00000223530.2	2903	1	-10	178	-10	70	mono-exon	FALSE	NA	NA	NA	NA	NA	5	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTCAATGGATTAATTTG	NA	False	NA	NA	False	NA	NA	NA	14787622	14784887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_14784900_14787600
81778	chr16	-	495	1	Intergenic	novelGene_3834	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGCGTGGAATGCGAGTGC	NA	False	NA	NA	False	NA	NA	NA	57212039	57211544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
81779	chr8	-	2407	8	NIC	ENSMUSG00000031816.16	novel	2415	8	NA	NA	-5	-1	intron_retention	FALSE	canonical	3	11	junction_5	24.5581359393649	88	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCTGCTTGTATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	121835123	121824296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831298_121832312_121832427_121833608_121833713_121835026
81780	chr18	-	2242	16	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	7	158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	361.722668475296	1	114	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAACTTTTGACATTTCT	7	True	NA	NA	False	NA	NA	NA	10030074	9995435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000617_10001766_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016657_10018026_10018096_10022817_10022851_10024533_10024660_10029912
81781	chr5	-	2210	8	FSM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	751	0	751	0	multi-exon	FALSE	canonical	3	45	junction_7	31.3453443472057	263	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	NA	False	NA	NA	NA	120832717	120818267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359_120821522_120821751_120821814_120832474
81782	chr3	+	4699	11	ISM	ENSMUSG00000027677.18	ENSMUST00000108210.9	2684	12	712	-2208	-251	-139	3prime_fragment	FALSE	canonical	3	43	junction_9	49.6315423898956	87	49	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGGAGATGCTGATTTA	NA	False	NA	NA	False	NA	NA	NA	33855111	33866301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
81783	chr7	-	3725	8	Fusion	ENSMUSG00000035458.16_ENSMUSG00000055809.8	novel	2224	12	NA	NA	500	592	intron_retention	FALSE	canonical	3	14	junction_7	5.87627537177232	3	69	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCTGCCTCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	4534952	4525339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_4526859_4526936_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772
81784	chr1	-	5025	28	NNC	ENSMUSG00000067851.12	novel	6978	38	NA	NA	20638	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_17	28.7200192578772	102	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACAGCCCTGTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	10259694	10207801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_10209222_10210691_10210810_10211783_10211923_10212800_10212970_10214942_10215083_10217627_10217761_10222025_10222099_10223610_10223750_10223831_10223968_10224505_10224636_10227138_10227270_10228124_10228286_10229792_10229966_10230101_10230254_10230925_10231096_10231187_10231229_10233921_10234007_10243051_10243210_10243418_10243578_10244291_10244421_10250050_10250203_10251094_10251267_10253887_10253973_10254200_10254407_10254610_10254723_10258981_10259184_10259451_10259561_10259663
81785	chr6	+	3453	3	ISM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	-17	1485	0	447	intron_retention	FALSE	canonical	3	33	junction_1	8	3	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTTCCAGATAGATGTC	8309	False	NA	NA	False	NA	NA	NA	72324299	72328646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_72324499_72324575_72324695_72325511
81786	chr1	-	2834	1	Genic_Genomic	ENSMUSG00000040865.16	novel	NA	NA	NA	NA	-2609	-52279	mono-exon	FALSE	NA	NA	NA	NA	NA	34	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCGAGGGAGGGGGGGT	NA	False	NA	NA	False	NA	NA	NA	63156435	63153601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_63153600_63156400
81787	chr15	-	2866	7	FSM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	-13	3052	-13	685	multi-exon	FALSE	canonical	3	83	junction_3	10.9392260542813	107	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAATCACTTGAGTTCTA	NA	False	NA	NA	False	NA	NA	NA	38976124	38957677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38959504_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
81788	chr15	+	2848	2	NNC	ENSMUSG00000050328.3	novel	1031	2	NA	NA	-4857	2249	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	98	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTGAGAACCATTTC	NA	False	NA	NA	False	NA	NA	NA	102840334	102849293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102840603_102846713
81789	chr2	+	2949	4	NIC	ENSMUSG00000032679.13	novel	1806	5	NA	NA	18	489	intron_retention	FALSE	canonical	3	43	junction_1	85.7943277068284	209	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCTTTACCCTTAAGCC	NA	False	NA	NA	False	NA	NA	NA	103926202	103945097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_103928190_103934515_103934595_103941084_103941190_103944319
81790	chr15	+	7289	8	FSM	ENSMUSG00000050310.10	ENSMUST00000226181.2	4695	8	-3	-2591	-1	751	multi-exon	FALSE	canonical	3	60	junction_7	8.20900451346208	27	96	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTCCAGCAGTGCACTAC	NA	False	NA	NA	False	NA	NA	NA	6737858	6795649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968
81791	chr5	+	3415	4	NNC	ENSMUSG00000046079.17	novel	3929	3	NA	NA	-18	-312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	227.551215236385	1	109	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAACTTAAAGCAAGTGAG	4950	False	NA	NA	False	NA	NA	NA	105848713	105962764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_105848952_105880095_105880241_105959589_105960672_105960814
81792	chr18	+	3253	10	NNC	ENSMUSG00000024423.7	novel	3763	11	NA	NA	15	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	405.110897787474	2	95	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTTCTTATGGCTAC	NA	False	NA	NA	False	NA	NA	NA	13105343	13126001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_13105430_13107769_13107936_13109525_13109589_13115146_13115233_13117293_13117422_13118275_13118378_13121316_13121443_13122801_13122937_13123549_13125135_13125225
81793	chr6	+	1483	1	Intergenic	novelGene_4150	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTATGCCCCAGTGTGGG	NA	False	NA	NA	False	NA	NA	NA	43482905	43484388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_43482900_43484400
81794	chr17	+	1561	5	Genic_Genomic	ENSMUSG00000117373.2	novel	1052	3	NA	NA	1644	11635	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	20	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTCGTTGGCCAATC	NA	False	NA	NA	False	NA	NA	NA	33078223	33096909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_33079033_33082089_33082319_33083419_33083592_33095977_33096098_33096678
81796	chr14	+	2084	1	Antisense	novelGene_ENSMUSG00000021978.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	82	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAATATATATATGTGTA	NA	False	NA	NA	False	NA	NA	NA	65289511	65291595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_65289500_65291600
81797	chr11	-	4348	21	NNC	ENSMUSG00000038351.15	novel	4743	23	NA	NA	-24	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_20	18.9074059563971	117	56	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAGGCTCTGATGGCTA	NA	False	NA	NA	False	NA	NA	NA	74759942	74740090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_74741722_74741924_74742093_74742565_74742663_74743900_74744011_74744150_74744234_74744611_74744737_74744954_74745336_74748443_74748627_74748876_74749006_74749454_74749601_74749686_74749752_74750571_74750726_74755910_74756038_74756186_74756348_74757394_74757463_74757856_74757982_74758436_74758572_74758806_74758953_74759049_74759118_74759402_74759547_74759840
81798	chr9	+	2683	1	Intergenic	novelGene_1092	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATATAGGAGACGGGGG	3125	False	NA	NA	False	NA	NA	NA	62348574	62351257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_62348600_62351300
81799	chr10	+	5353	10	NNC	ENSMUSG00000019857.8	novel	2201	4	NA	NA	-119	20541	intron_retention	FALSE	non_canonical	0	0	junction_4	356.52801043147	598	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGGTCGCCCCAGCCCGA	1705	False	NA	NA	False	NA	NA	NA	53473231	53505862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_53473395_53478443_53478560_53482204_53482382_53483760_53487567_53488921_53489048_53491946_53492154_53496232_53496310_53498849_53499167_53501809_53502131_53505819
81800	chr15	-	3084	15	NIC	ENSMUSG00000009733.10	novel	3302	16	NA	NA	14	-21	combination_of_known_junctions	FALSE	canonical	2	10	junction_10	28.9275132081581	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGATTTTTTTATAGAG	NA	False	NA	NA	False	NA	NA	NA	100449848	100400697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_100402325_100404086_100404139_100409575_100409719_100410089_100410215_100410961_100411053_100411909_100412004_100412684_100412734_100415830_100415920_100416450_100416562_100418443_100418597_100423447_100423554_100425757_100425835_100426275_100426428_100449205_100449363_100449790
81801	chr10	+	3019	10	Fusion	ENSMUSG00000020307.16_ENSMUSG00000054206.3	novel	1287	5	NA	NA	25	0	multi-exon	FALSE	non_canonical	0	0	junction_1	933.872555875417	968	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTCTGCCTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	79518053	79531095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_79518105_79518234_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682_79525300_79528654_79528815_79529957_79530097_79530184_79530452_79530820
81802	chr1	-	2662	7	FSM	ENSMUSG00000054770.17	ENSMUST00000114410.10	2512	7	-4	-146	-4	-1	multi-exon	FALSE	canonical	3	34	junction_6	14.3372087784044	123	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTGGTTTAACTGAGCA	NA	False	NA	NA	False	NA	NA	NA	58009291	57994260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58009179
81803	chr14	+	2064	20	FSM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	115	5	115	-5	multi-exon	FALSE	canonical	3	23	junction_6	6.49738920505725	122	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGACTTTGCCTCTTTTTT	1443	False	NA	NA	False	NA	NA	NA	55855608	55862847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529_55862637_55862732
81804	chr8	-	2534	4	NNC	ENSMUSG00000086067.2	novel	1193	5	NA	NA	3304	9765	intron_retention	TRUE	non_canonical	0	0	junction_1	0	13	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCAGCACGGAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	85340509	85328065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85328133_85328382_85328447_85328548_85328668_85338225
81805	chr5	-	3289	16	FSM	ENSMUSG00000057541.15	ENSMUST00000119946.8	3407	16	114	4	-44	-3	multi-exon	TRUE	canonical	3	301	junction_13	29.1369181623589	159	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGTGCATGTAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	23988595	23945649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259_23957386_23959455_23959585_23965219_23965298_23967360_23967473_23973765_23973911_23980666_23980769_23980881_23980967_23983070_23983498_23988509
81806	chr11	-	1898	9	NIC	ENSMUSG00000001054.10	novel	1946	10	NA	NA	2	-1	intron_retention	FALSE	canonical	3	245	junction_3	13.7380630002923	40	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGATTGCATGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	51526578	51514498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
81807	chr9	+	2653	1	NIC	ENSMUSG00000002825.9	novel	776	8	NA	NA	1095	-1455	mono-exon	FALSE	NA	NA	NA	NA	NA	1093	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAGAAGATGGCGTCAGA	3529	False	NA	NA	False	NA	NA	NA	21324292	21326945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21324300_21326900
81809	chr11	-	1342	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	67	0	67	0	multi-exon	FALSE	canonical	3	855	junction_5	8144.23656336185	6	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	7094	False	NA	NA	False	NA	NA	NA	69811389	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166
81811	chr2	-	1678	8	NIC	ENSMUSG00000026767.13	novel	1843	10	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	177	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	NA	False	NA	NA	NA	12424248	12352073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
81812	chr7	+	3695	9	NNC	ENSMUSG00000036528.17	novel	3827	26	NA	NA	5549	9376	intron_retention	FALSE	non_canonical	0	0	junction_1	0	78	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGAGATGCCTGACTTA	NA	False	NA	NA	False	NA	NA	NA	107347661	107357166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_107350474_107351537_107351623_107352421_107352501_107353046_107353183_107353910_107354016_107356115_107356191_107356391_107356522_107356789_107356912_107357015
81813	chr5	-	2093	1	NIC	ENSMUSG00000072694.9	novel	444	2	NA	NA	-4	578	mono-exon	FALSE	NA	NA	NA	NA	NA	15	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAGAATCCTGTTTTGG	9612	False	NA	NA	False	NA	NA	NA	114961510	114959417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_114959400_114961500
81814	chr14	+	916	9	NNC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	-10	-488	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1088.36321344255	2	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTGCCAGAATTATGGAA	NA	False	NA	NA	False	NA	NA	NA	14296825	14303039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298448_14298507_14298597_14298634_14299333_14299613_14299953_14300065_14300336_14300429_14302918
81815	chr10	-	3727	10	ISM	ENSMUSG00000035529.11	ENSMUST00000037646.9	3877	12	4033	-253	3763	249	3prime_fragment	FALSE	canonical	3	192	junction_3	16.4188990773919	97	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCCCTTTACTCGGGGTG	NA	False	NA	NA	False	NA	NA	NA	85748757	85727580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_85729304_85735038_85735208_85736705_85737021_85737567_85737696_85738790_85738877_85739994_85740114_85741212_85741363_85743139_85743935_85746086_85746273_85748701
81816	chr4	+	1033	6	ISM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	10409	1201	117	-1201	3prime_fragment	FALSE	canonical	3	112	junction_3	6.22896460095897	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTAAGGGGAGGACCCCGT	NA	False	NA	NA	False	NA	NA	NA	129365782	129381090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
81817	chr14	-	3877	2	Antisense	novelGene_ENSMUSG00000022010.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	10	94	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAATATCTAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	76726565	76722602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76726420_76726505
81818	chr4	-	2028	6	NNC	ENSMUSG00000006699.18	novel	2108	6	NA	NA	31	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	733.763449621198	2	116	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAACCCTTCACAAGT	NA	False	NA	NA	False	NA	NA	NA	137084979	137047028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137048498_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
81819	chr7	-	663	5	NIC	ENSMUSG00000000486.14	novel	1048	10	NA	NA	-13	20	intron_retention	FALSE	canonical	3	221	junction_4	17.1828402774396	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCCCTCAAGCAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	126817611	126815879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
81820	chr14	+	2764	7	FSM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	245	1219	245	535	multi-exon	TRUE	canonical	3	169	junction_1	20.8306664959782	204	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCTTGGTAAATCAGCT	NA	False	NA	NA	False	NA	NA	NA	54701838	54707735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_54702069_54702360_54702406_54703030_54703167_54704916_54705108_54705220_54706239_54706492_54706623_54706721
81821	chr17	+	2885	22	NNC	ENSMUSG00000034709.9	novel	1112	5	NA	NA	-20313	-259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	18.4483098427585	9	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTCATTACTTCCTGTAT	NA	False	NA	NA	False	NA	NA	NA	88817232	88895534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88817439_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
81822	chr6	+	2431	5	NNC	ENSMUSG00000040242.15	novel	2766	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	163.600695291921	7	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGTCTCAGGGTTAATT	NA	False	NA	NA	False	NA	NA	NA	146479418	146500695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_146479707_146487179_146487317_146490237_146490277_146496723_146496788_146498792
81823	chrX	+	2306	1	NIC	ENSMUSG00000087193.8	novel	1449	4	NA	NA	18616	271	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	19	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTACCCAAAGCTAAGATC	NA	False	NA	NA	False	NA	NA	NA	7936445	7938751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7936400_7938800
81824	chr11	+	3707	10	ISM	ENSMUSG00000034940.16	ENSMUST00000183714.8	3651	21	37460	-1606	12125	1123	3prime_fragment	FALSE	canonical	3	59	junction_9	6.30696264280817	65	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAGGGAAAGGCTCACAC	6664	False	NA	NA	False	NA	NA	NA	83892761	83933360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_83892797_83892998_83893062_83899443_83900377_83910416_83910780_83914086_83914251_83915103_83915158_83915820_83915918_83917443_83917593_83930036_83930148_83931622
81825	chr11	+	1129	6	NNC	ENSMUSG00000017801.16	novel	1736	7	NA	NA	2479	3167	intron_retention	FALSE	non_canonical	0	0	junction_1	0	98	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCCTTTCCCGCCACCAA	NA	False	NA	-49	True	NA	NA	NA	100982966	100986200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100983285_100983357_100983418_100983549_100983601_100983685_100983835_100984506_100984619_100985761
81826	chr5	-	3410	9	Antisense	novelGene_ENSMUSG00000029486.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	621	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCCCGGGTTTCAACTGC	NA	False	NA	NA	False	NA	NA	NA	96414565	96357991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96358051_96361643_96361770_96371629_96371890_96374141_96374227_96375537_96375609_96379537_96379652_96386697_96386805_96409920_96409999_96412055
81827	chr17	+	7211	28	ISM	ENSMUSG00000024073.17	ENSMUST00000182944.8	14610	73	29557	85686	1242	1170	internal_fragment	FALSE	canonical	2	12	junction_10	8.6796357537375	13	63	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTGTGGTTTTTCGTTG	NA	False	NA	NA	False	NA	NA	NA	74865019	74923692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_74865090_74868145_74868258_74869013_74869097_74872785_74873170_74880567_74880627_74886159_74887558_74892947_74893098_74896589_74896816_74900083_74900245_74901358_74901449_74901864_74901997_74903851_74904034_74905033_74905168_74905977_74906140_74906231_74906364_74906864_74906963_74909959_74910108_74911488_74911623_74912983_74913119_74915091_74915280_74916053_74916384_74916631_74916732_74917989_74918205_74918342_74918552_74918993_74919341_74920371_74920592_74921293_74921428_74922214
81828	chr8	-	3571	5	NIC	ENSMUSG00000055553.17	novel	639	6	NA	NA	6	1857	intron_retention	FALSE	canonical	3	9	junction_1	297.420052282962	76	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCAGTTACCTCCACATC	NA	False	NA	NA	False	NA	NA	NA	70975748	70964188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70967399_70968044_70968092_70971014_70971168_70972586_70972712_70975712
81829	chr6	+	2942	8	NNC	ENSMUSG00000002871.15	novel	1152	9	NA	NA	8	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	41.1493050502976	8	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAGTAGGTGTGAGCTG	NA	False	NA	NA	False	NA	NA	NA	88879288	88889207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_88879513_88882922_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132
81830	chr2	+	2378	3	NIC	ENSMUSG00000001403.14	novel	967	6	NA	NA	57	-7	intron_retention	FALSE	canonical	3	1606	junction_1	13	6	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAAATTGTTTTCTCAAG	NA	False	NA	NA	False	NA	NA	NA	164611879	164614820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_164612001_164612286_164614147_164614423
81831	chr13	-	1874	15	NIC	ENSMUSG00000021639.18	novel	1656	16	NA	NA	18	-104	intron_retention	FALSE	canonical	3	286	junction_9	18.7186472561999	5	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGCCATTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	100629043	100605191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
81832	chr15	-	2980	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-141	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	711.346005041772	37	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGACCTTCCCCCATTTG	NA	False	NA	NA	False	NA	NA	NA	81283936	81247868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249359_81249417_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
81833	chr16	+	4249	2	Antisense	novelGene_ENSMUSG00000044626.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGCGAGTGAGTCCGTGA	4537	False	NA	NA	False	NA	NA	NA	21798924	21814225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_21803019_21814070
81834	chr3	-	3383	18	NNC	ENSMUSG00000028078.15	novel	4012	16	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	98.0635342388028	1	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAATAAACTCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	86827686	86693489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86694720_86696715_86696794_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723741_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056_86827183_86827386
81835	chr10	+	2625	1	Intergenic	novelGene_3554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGTAAAAAATAAATGAATTT	NA	False	NA	NA	False	NA	NA	NA	120376180	120378805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_120376200_120378800
81836	chr1	+	2831	1	ISM	ENSMUSG00000037434.8	ENSMUST00000044954.7	5244	2	2305	1345	1816	-1345	mono-exon	FALSE	NA	NA	NA	NA	NA	29	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCCTCTTGGGGACTATC	NA	False	NA	NA	False	NA	NA	NA	191641183	191644014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_191641200_191644000
81837	chr9	-	5061	3	Fusion	ENSMUSG00000098161.2_ENSMUSG00000103968.2	novel	388	4	NA	NA	-32	2913	intron_retention	FALSE	canonical	3	48	junction_1	6.5	48	77	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGTCATCCTCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	118235199	118228619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_118233493_118233797_118233891_118235104
81838	chr17	-	2430	6	NNC	ENSMUSG00000024459.19	novel	2459	4	NA	NA	14	275	intron_retention	TRUE	non_canonical	0	0	junction_1	107.61115183846	3	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGTTAAGTGAGACTGG	NA	False	NA	NA	False	NA	NA	NA	37300382	37294677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_37295197_37295299_37295995_37298307_37298416_37298546_37298823_37299396_37299673_37299826
81839	chr3	+	3435	1	FSM	ENSMUSG00000105645.2	ENSMUST00000199743.2	1165	1	-1726	-544	-1726	544	mono-exon	FALSE	NA	NA	NA	NA	NA	5	85	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGACTATTGTGGGGT	NA	False	NA	NA	False	NA	NA	NA	115735019	115738454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_115735000_115738500
81840	chr5	-	1875	7	Antisense	novelGene_ENSMUSG00000019494.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	146	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCCACGGCCCGCCCCT	9617	False	NA	NA	False	NA	NA	NA	138162248	138159361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_138159443_138159634_138159759_138159934_138161043_138161389_138161504_138161585_138161680_138161768_138161872_138161997
81841	chr1	-	3260	2	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGGCAGTCTTATTCCA	NA	False	NA	NA	False	NA	NA	NA	87162854	87153856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87153956_87159693
81842	chr7	-	1823	7	ISM	ENSMUSG00000030780.16	ENSMUST00000033044.16	2627	13	21613	13	-1709	-13	3prime_fragment	FALSE	canonical	3	141	junction_4	13.6554832291729	51	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCCTGGAGACCGCT	1103	False	NA	NA	False	NA	NA	NA	127875729	127870563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875316_127875399_127875585_127875666
81843	chr8	+	2122	4	ISM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	33	1906	2	72	3prime_fragment	FALSE	canonical	3	499	junction_2	11.4697670227235	26	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATATATACTATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	80438481	80502043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_80439909_80446286_80446378_80455758_80455880_80501560
81844	chr8	-	2533	6	ISM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	-149	2	-149	-2	intron_retention	FALSE	canonical	3	202	junction_5	15.8745078663875	6	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTCCTTTTTCCTAGAGT	NA	False	NA	NA	False	NA	NA	NA	71219456	71215420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563
81845	chr3	-	1469	13	NNC	ENSMUSG00000062908.13	novel	2047	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.910335207467	8	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	157	False	NA	NA	False	NA	NA	NA	153650104	153627993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_153628179_153628591_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
81846	chr10	-	2385	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	353	19	6	-11	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	59	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTAAACTTACCCACCAG	NA	False	NA	NA	False	NA	NA	NA	7539019	7505155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
81847	chr8	+	3935	9	ISM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	-67	2023	6	1431	5prime_fragment	FALSE	canonical	3	16	junction_1	7.75302360373035	29	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATACAAGTCCATTCCCAT	9540	False	NA	NA	False	NA	NA	NA	123502249	123542596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298
81848	chrM	+	558	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	714	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	276	False	NA	NA	False	NA	NA	NA	10880	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_11019_11124
81849	chr14	-	1912	5	ISM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	11442	4	-1771	-4	3prime_fragment	FALSE	canonical	3	816	junction_3	43.8320658878862	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCCTATAGTTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	51011534	51002875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733
81850	chr19	-	3172	25	NNC	ENSMUSG00000056999.17	novel	5059	25	NA	NA	4	-186	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	231.567064919767	1	176	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAACCCAAAGTAATAAA	NA	False	NA	NA	False	NA	NA	NA	37340006	37248014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257988_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287191_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
81851	chr5	+	1082	1	Antisense	novelGene_ENSMUSG00000040731.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGGAGCAGCAGGCAGTT	NA	False	NA	NA	False	NA	NA	NA	134648729	134649811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_134648700_134649800
81852	chr4	-	3206	30	ISM	ENSMUSG00000028245.16	ENSMUST00000029910.12	3507	31	13288	8	3410	-8	3prime_fragment	FALSE	canonical	3	82	junction_12	11.2331258044625	52	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAAAGCACTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	6440983	6396214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_6396818_6398318_6398429_6398544_6398648_6398808_6398960_6406786_6406871_6408557_6408682_6409089_6409158_6409843_6409912_6413567_6413627_6414963_6415073_6416499_6416664_6417164_6417208_6417745_6417878_6418260_6418382_6418471_6418524_6419863_6419928_6420049_6420141_6421056_6421137_6423321_6423499_6424878_6424988_6426401_6426474_6428391_6428522_6432679_6432733_6432829_6432878_6433262_6433335_6435056_6435108_6437741_6437779_6437853_6437922_6438042_6438122_6440899
81853	chr7	-	2862	2	NNC	ENSMUSG00000057143.16	novel	3740	8	NA	NA	11667	0	intron_retention	TRUE	non_canonical	0	0	junction_1	0	18	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGTCCAACCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	103990878	103987960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_103989052_103989107
81854	chr4	+	2916	6	NNC	ENSMUSG00000073988.14	novel	2862	5	NA	NA	-153	-8	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_5	29.7926165349739	72	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACAAACCATGGTGTTTA	214	False	NA	NA	False	NA	NA	NA	20008203	20030462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_20008347_20014630_20014785_20021191_20021386_20023784_20023896_20027673_20027933_20028407
81855	chrX	+	1644	3	ISM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	-16	-205	-16	199	intron_retention	FALSE	canonical	3	1181	junction_1	237.5	180	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGTGGTGCAAGCCTAA	5416	False	NA	NA	False	NA	NA	NA	72830617	72834635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_72830913_72832440_72832560_72833405
81856	chr14	-	6784	3	ISM	ENSMUSG00000040721.10	ENSMUST00000036328.9	10397	10	24786	57	4696	-57	3prime_fragment	FALSE	canonical	3	44	junction_2	9.5	142	49	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAGGAACTTTAAAAG	NA	False	NA	NA	False	NA	NA	NA	55304995	55297775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_55301029_55301261_55304739_55304941
81857	chr3	-	2898	1	Antisense	novelGene_ENSMUSG00000051278.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAATCCCAGCAACCACA	NA	False	NA	NA	False	NA	NA	NA	127389444	127386546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_127386500_127389400
81858	chr4	-	2748	5	FSM	ENSMUSG00000023075.10	ENSMUST00000102636.4	3052	5	304	0	190	0	multi-exon	FALSE	canonical	3	473	junction_3	40.3198152277512	250	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATGCATTGGAATGTG	NA	False	NA	NA	False	NA	NA	NA	123643834	123628351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_123630658_123631801_123631874_123632935_123633071_123637225_123637367_123643740
81860	chr16	-	4511	13	ISM	ENSMUSG00000034422.15	ENSMUST00000042665.9	7417	17	-92	8562	-92	-8562	5prime_fragment	FALSE	canonical	1	2	junction_11	4.7169905660283	15	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGTCAGTGATGTCTAAG	NA	False	NA	NA	False	NA	NA	NA	35692006	35661805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_35662001_35664613_35664782_35665097_35665161_35665639_35665790_35666379_35666456_35673101_35673324_35673888_35674129_35676852_35679135_35680799_35681037_35683729_35683964_35685488_35685523_35686518_35686659_35691536
81861	chr15	+	3203	13	NNC	ENSMUSG00000051864.11	novel	3229	13	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	24.4169510791171	1	113	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTCTTTTTATTGCA	NA	False	NA	NA	False	NA	NA	NA	86098674	86382702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_86098838_86118930_86118988_86119716_86120046_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
81862	chr11	-	1404	11	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	0	-73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5562.15730539869	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACCGTGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	69563141	69558120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559157_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561797_69563104
81863	chr17	-	3417	16	NIC	ENSMUSG00000015659.13	novel	4007	17	NA	NA	0	-462	combination_of_known_splicesites	FALSE	canonical	3	9	junction_8	22.4376667434225	18	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGGATAATAGAGCAAGATG	2607	False	NA	NA	False	NA	NA	NA	6130002	6092932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
81864	chr9	-	2648	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	172	-66	-19	39	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	311	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGGTAGAGTTGATGAT	NA	False	NA	NA	False	NA	NA	NA	111100687	111057256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
81865	chr10	-	2114	16	NNC	ENSMUSG00000001120.16	novel	2544	19	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	33.8982792090297	2	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGCTCTGACTTCTCT	1075	False	NA	NA	False	NA	NA	NA	76797783	76597693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624347_76625621_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
81866	chr1	-	3953	11	Antisense	novelGene_ENSMUSG00000040423.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGACAAGTCCACTGCAC	NA	False	NA	NA	False	NA	NA	NA	160797380	160778537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160778691_160779179_160779403_160782356_160782721_160783381_160783550_160786970_160787123_160789839_160790053_160791046_160791138_160791272_160791408_160792516_160792690_160793241_160793357_160795214
81867	chr11	-	1991	9	NIC	ENSMUSG00000001054.10	novel	1946	10	NA	NA	32	-5	intron_retention	FALSE	canonical	3	245	junction_2	13.856406460551	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTACCAATGATTGCATG	NA	False	NA	NA	False	NA	NA	NA	51526691	51514504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
81868	chr1	+	2787	23	NIC	ENSMUSG00000026104.15	novel	2834	23	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_2	8.26085561774264	37	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGATGAGTGGGAAAGCAG	3258	False	NA	NA	False	NA	NA	NA	52158608	52194571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_52158783_52159070_52159195_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144
81869	chr11	-	977	1	FSM	ENSMUSG00000064901.3	ENSMUST00000082967.3	137	1	-597	-243	-597	243	mono-exon	FALSE	NA	NA	NA	NA	NA	16	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTGGGGACATGGTGA	NA	False	NA	NA	False	NA	NA	NA	97673198	97672221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97672200_97673200
81870	chr3	+	2893	5	FSM	ENSMUSG00000027963.15	ENSMUST00000106502.2	2840	5	-26	-27	-26	-8	multi-exon	FALSE	canonical	3	16	junction_1	20.597329924046	64	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCAGCTGGCCACTGTGT	26	False	NA	NA	False	NA	NA	NA	115801842	115822636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_115802187_115804270_115804346_115817655_115818084_115818973_115819045_115820661
81872	chr6	-	867	8	Antisense	novelGene_ENSMUSG00000029993.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATCACTTCAGTGCCAGT	NA	False	NA	NA	False	NA	NA	NA	87005427	86986887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_86986941_86989887_86989994_86992550_86992687_86996349_86996412_86997698_86997820_87000107_87000169_87002465_87002641_87005274
81873	chr2	+	2400	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	-24	-1420	1	1420	multi-exon	FALSE	canonical	3	586	junction_1	0	1306	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCATTTGTAGTCTATTT	NA	False	NA	NA	False	NA	NA	NA	148514521	148519367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_148514756_148517201
81874	chrX	+	2584	6	NIC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	-43	361	intron_retention	FALSE	canonical	3	236	junction_4	22.2656686403081	280	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCCGGCTCTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	100838218	100842609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
81875	chr2	-	6290	16	ISM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	9407	19	9407	-19	3prime_fragment	FALSE	canonical	3	54	junction_6	8.31437844272733	73	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATTATACCAAGAGAGAAT	9711	False	NA	NA	False	NA	NA	NA	125615383	125578924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_125582838_125585733_125585954_125587716_125587872_125589304_125589526_125592198_125592362_125593648_125593782_125594733_125594901_125599113_125599256_125599351_125599520_125600085_125600167_125602191_125602327_125609294_125609411_125609728_125609754_125610026_125610254_125613328_125613465_125615095
81876	chr1	-	935	7	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.74535599249993	2273	2	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGAAACACCCGAAGCGCT	351	False	NA	NA	False	NA	NA	NA	87155785	87142065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87142216_87147300_87147363_87148714_87148775_87152072_87152178_87153569_87153723_87153816_87153956_87155519
81877	chr18	-	959	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	21	-15	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	3	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
81878	chr18	-	869	2	Genic_Genomic	ENSMUSG00000091957.4	novel	965	1	NA	NA	-15	-31	multi-exon	FALSE	canonical	0	0	junction_1	0	4	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_61392658_61392737
81879	chr18	-	590	2	Genic_Genomic	ENSMUSG00000091957.4	novel	965	1	NA	NA	-15	-35	multi-exon	FALSE	non_canonical	0	0	junction_1	0	328	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTGAAAAAAAAAAAAAAAAA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_61392417_61392771
81880	chrX	+	871	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	48	-37	48	37	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTGATAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51987512	51988383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_51987500_51988400
81881	chrX	+	858	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	66	-42	66	42	mono-exon	FALSE	NA	NA	NA	NA	NA	2	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51987530	51988388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_51987500_51988400
81882	chr18	-	369	2	Genic_Genomic	ENSMUSG00000091957.4	novel	965	1	NA	NA	53	-34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	7487	False	NA	NA	False	NA	NA	NA	61392979	61392112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_61392259_61392756
81883	chrX	+	961	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	-26	-53	-26	53	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAAGTCACG	NA	False	NA	NA	False	NA	NA	NA	51987438	51988399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_51987400_51988400
81884	chr18	-	948	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	32	-15	-32	mono-exon	FALSE	NA	NA	NA	NA	NA	3	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
81885	chrX	+	567	2	Genic_Genomic	ENSMUSG00000081684.5	novel	882	1	NA	NA	-27	53	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGAAAGTCACG	NA	False	NA	NA	False	NA	NA	NA	51987437	51988399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_51987649_51988043
81886	chrX	+	937	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	-22	-33	-22	33	mono-exon	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTGCTGATAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51987442	51988379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_51987400_51988400
81887	chr7	+	3531	5	NIC	ENSMUSG00000047473.15	novel	3558	5	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	2	9	junction_4	7.96868872525461	19	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGATGTTAAACATGAATTA	NA	False	NA	NA	False	NA	NA	NA	29483447	29494128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29484327_29485643_29485729_29487473_29487601_29488765_29488862_29491784
81888	chr8	-	2462	6	Intergenic	novelGene_1700	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_5	54.2232422490577	4	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACCTCACTATCCTTCT	NA	False	NA	NA	False	NA	NA	NA	89779651	89772318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_89774095_89774349_89774422_89775330_89775532_89776215_89776356_89777159_89777290_89779508
81889	chr11	-	1862	1	NIC	ENSMUSG00000044894.15	novel	1521	2	NA	NA	13	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	52	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2960	False	NA	NA	False	NA	NA	NA	53321641	53319779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_53319800_53321600
81890	chr10	+	4502	28	FSM	ENSMUSG00000025369.16	ENSMUST00000026433.9	4533	28	33	-2	6	2	multi-exon	FALSE	canonical	3	73	junction_11	16.862633913377	107	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGGTGCCTCTGTGT	2700	False	NA	NA	False	NA	NA	NA	128295195	128326043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
81891	chr7	+	1303	4	NNC	ENSMUSG00000042918.18	novel	536	2	NA	NA	-428	-26	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	1.4142135623731	34	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTGAATTAAACTGTGG	NA	False	NA	NA	False	NA	NA	NA	45293379	45295139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45293393_45293627_45293853_45293942_45293998_45294129
81892	chr1	+	1063	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9881.20129134105	2	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454447	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457279_86457452_86457527_86457781_86458080_86458129
81893	chr11	-	429	5	Antisense	novelGene_ENSMUSG00000020372.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCGCAGGAGACGATGAT	NA	False	NA	NA	False	NA	NA	NA	48696904	48694310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48694318_48694723_48694794_48694980_48695123_48696370_48696481_48696804
81894	chr19	+	4049	19	NNC	ENSMUSG00000046139.9	novel	3158	20	NA	NA	0	-126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	69.4946485194328	2	188	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGTGTGCTTTATACC	NA	False	NA	NA	False	NA	NA	NA	11889806	11922329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_11889942_11891711_11891824_11897541_11897760_11898165_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
81895	chr2	+	4813	11	Antisense	novelGene_ENSMUSG00000041219.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	80	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCAGCTATGTCCTGAGGT	6368	False	NA	NA	False	NA	NA	NA	113661840	113676170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_113664807_113665121_113665264_113667211_113667316_113667769_113667898_113670019_113670188_113671043_113671119_113671941_113672085_113672250_113672415_113673029_113673285_113673591_113673689_113675599
81896	chrX	-	3291	6	ISM	ENSMUSG00000025269.17	ENSMUST00000112725.8	3613	7	1720	85	25	-85	3prime_fragment	FALSE	canonical	3	13	junction_1	30.3539124331609	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAAGACTTTCTATAATT	NA	False	NA	NA	False	NA	NA	NA	149371120	149302599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_149305207_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
81897	chr2	+	4809	4	Antisense	novelGene_ENSMUSG00000087179.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	234	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAAGGAGGAGCGGGCC	NA	False	NA	NA	False	NA	NA	NA	156672625	156681720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_156676957_156679740_156679832_156680335_156680456_156681453
81898	chr10	+	2402	14	Antisense	novelGene_ENSMUSG00000019792.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	434	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCGGCCTCCACGGGCCCG	NA	False	NA	NA	False	NA	NA	NA	30410222	30476678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_30411241_30423652_30423770_30434910_30435047_30435159_30435233_30436813_30436978_30442420_30442507_30443760_30443868_30463434_30463592_30466020_30466155_30466837_30466930_30467014_30467097_30470108_30470185_30473735_30473804_30476586
81899	chrX	+	2292	2	Antisense	novelGene_ENSMUSG00000031139.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAGAATAAAACATTCAGA	NA	False	NA	NA	False	NA	NA	NA	59105355	59108518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_59107582_59108452
81900	chr14	+	1141	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-179	686	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTAACAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	13669258	13670459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669602_13669661
81901	chr4	+	5080	17	FSM	ENSMUSG00000028289.13	ENSMUST00000029964.12	6746	17	29	1637	8	-953	multi-exon	TRUE	canonical	2	9	junction_4	5.10170008428563	27	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCGCCCTATCCTTCTT	-4	True	NA	NA	False	NA	NA	NA	28813159	28965862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938780_28942585_28942695_28943322_28943379_28947527_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
81902	chr2	+	4962	1	ISM	ENSMUSG00000027351.15	ENSMUST00000028829.13	6016	7	55936	8	55672	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	84	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAAGGGCTTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	117007790	117012752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_117007800_117012800
81903	chr6	+	2496	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	-2	-1687	-2	-11	multi-exon	FALSE	canonical	3	968	junction_1	14.522013940528	6406	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAAATTCCACTCTATT	-1	True	NA	NA	False	NA	NA	NA	18848575	18855739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
81904	chr2	+	2573	4	NIC	ENSMUSG00000005505.13	novel	2437	4	NA	NA	63	-22	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	32.5678778348646	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATAAACGTTTCTGAAAT	2427	False	NA	NA	False	NA	NA	NA	90735175	90740883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90735254_90735762_90736628_90737888_90737996_90739360
81905	chr18	+	3253	6	ISM	ENSMUSG00000042439.14	ENSMUST00000182478.8	5471	8	42282	0	-438	0	3prime_fragment	FALSE	canonical	3	13	junction_3	30.2654919008431	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTTCAAGAGAGTTATT	NA	False	NA	NA	False	NA	NA	NA	65757770	65822012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_65758406_65771820_65772003_65777263_65777441_65815965_65816079_65818595_65818762_65820032
81906	chr11	-	5471	6	ISM	ENSMUSG00000041961.15	ENSMUST00000172492.8	4926	9	92014	-989	92014	989	3prime_fragment	FALSE	canonical	3	35	junction_3	4.81663783151692	62	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTCTGGTTTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	5239726	5227612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_5232506_5233337_5233441_5236093_5236262_5237372_5237484_5239025_5239158_5239662
81907	chr7	+	3151	21	FSM	ENSMUSG00000025504.15	ENSMUST00000026577.13	3191	21	40	0	-36	0	multi-exon	TRUE	canonical	3	69	junction_6	10.2434125173206	225	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGATATCTGTTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	140918832	140942933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937230_140937455_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
81908	chr3	-	1594	1	Intergenic	novelGene_3167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAATCCACATTCTTCCA	NA	False	NA	NA	False	NA	NA	NA	98239933	98238339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_98238300_98239900
81909	chr3	+	6852	19	ISM	ENSMUSG00000027878.12	ENSMUST00000079812.8	10500	34	103212	959	103212	-959	3prime_fragment	FALSE	canonical	2	7	junction_9	3.75359909591308	29	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCTCTAGTGCCACTGC	NA	False	NA	NA	False	NA	NA	NA	98024065	98056718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_98024137_98024508_98024662_98028042_98028272_98029219_98029422_98031060_98031215_98031464_98031650_98033427_98033561_98038513_98038751_98041874_98041988_98042641_98043148_98044590_98044945_98045701_98045845_98045957_98046169_98046901_98046999_98048779_98048946_98050208_98050511_98051677_98051826_98052437_98052536_98053368
81910	chr1	+	5262	21	ISM	ENSMUSG00000025964.16	ENSMUST00000097717.9	5730	24	36078	189	-6720	-189	3prime_fragment	FALSE	canonical	2	14	junction_19	10.9292039966321	56	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTAATGTAGGATGT	NA	False	NA	NA	False	NA	NA	NA	63569405	63635246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_63569458_63573444_63573518_63574293_63574368_63576077_63576144_63582277_63582350_63584589_63584754_63585574_63585660_63586885_63586977_63588905_63588955_63590919_63591020_63594313_63594386_63594972_63595063_63596566_63596648_63602567_63602619_63603303_63603368_63605760_63605867_63607007_63607128_63610068_63610238_63612045_63612158_63624523_63624615_63631766
81911	chr2	-	2632	10	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	2	-472	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.527771296728	430	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGTACACTGTAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	153474699	153459324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_153460234_153460337_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
81912	chr1	+	5491	1	ISM	ENSMUSG00000073664.12	ENSMUST00000160834.8	15731	55	152238	1	48902	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	66	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGTTTGTAGTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	60371995	60377486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_60372000_60377500
81913	chr7	+	3362	2	ISM	ENSMUSG00000032640.11	ENSMUST00000036372.8	4176	3	15819	9	15819	-9	3prime_fragment	FALSE	canonical	3	207	junction_1	0	107	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCAGACCCATTTTGTC	NA	False	NA	NA	False	NA	NA	NA	65775081	65823537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_65775486_65820579
81914	chr17	-	1377	6	FSM	ENSMUSG00000024091.10	ENSMUST00000024897.10	3369	6	247	1745	247	348	multi-exon	FALSE	canonical	3	3309	junction_3	105.717737395387	863	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGATTCTTGCTCGATAG	3210	False	NA	NA	False	NA	NA	NA	65920303	65887066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_65887843_65889574_65889749_65899285_65899367_65900434_65900539_65901896_65902050_65920214
81915	chr3	-	4217	1	ISM	ENSMUSG00000040209.13	ENSMUST00000041124.13	13834	9	178832	17	9783	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	55	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTTTTTTGTGTATCT	NA	False	NA	NA	False	NA	NA	NA	9496313	9492096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_9492100_9496300
81916	chr7	+	916	6	FSM	ENSMUSG00000019738.16	ENSMUST00000108193.2	488	6	-424	-4	-40	-1	multi-exon	FALSE	canonical	3	11	junction_2	479.289724488226	54	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTCCCGTGTTTATTT	NA	False	NA	NA	False	NA	NA	NA	29931332	29932814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29931830_29931906_29931962_29932116_29932249_29932331_29932407_29932491_29932544_29932709
81917	chr3	+	2523	11	NIC	ENSMUSG00000027985.15	novel	3482	12	NA	NA	873	-45	combination_of_known_junctions	TRUE	canonical	1	2	junction_6	15.8773423468791	45	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAAGTGTCATTTTATT	NA	False	NA	NA	False	NA	NA	NA	130904992	131017960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_130905328_130907504_130907572_130909061_130909196_130978291_130978425_130982983_130983075_130984671_130984756_130986777_130986901_130988273_130988437_130993943_130994052_130997904_130997954_131016724
81918	chr17	+	5127	5	NNC	ENSMUSG00000034729.17	novel	1113	7	NA	NA	1	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	703.160499103867	42	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGTCCACCATGCCTGG	7149	False	NA	NA	False	NA	NA	NA	47679823	47689591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47681424_47683171_47686035_47686858_47686968_47688684_47688775_47689126
81919	chr7	+	4101	16	NNC	ENSMUSG00000030671.10	novel	719	4	NA	NA	-60	-1321	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	18.5021320092818	39	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTATTGAACTTGCGTT	NA	False	NA	NA	False	NA	NA	NA	114014455	114137165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_114014487_114090674_114090726_114093720_114093970_114097146_114097287_114105421_114105529_114107329_114107541_114108073_114108148_114117515_114117656_114118746_114118885_114120898_114121011_114122567_114122682_114126015_114126216_114129894_114130099_114131481_114131644_114133799_114134068_114135265
81920	chr15	-	2156	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	-784	-48	-784	48	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	778	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCTAATGATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	54954671	54939446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
81921	chr7	+	3483	7	NNC	ENSMUSG00000078786.10	novel	7247	8	NA	NA	144	1803	intron_retention	FALSE	canonical	1	1	junction_3	6.32455532033676	37	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCCTAACTTCTCCATC	NA	False	NA	NA	False	NA	NA	NA	26895349	26905548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_26895533_26896330_26896792_26899978_26900124_26900444_26900570_26901832_26901963_26902051_26902123_26903180
81922	chr14	-	4455	14	FSM	ENSMUSG00000022048.9	ENSMUST00000022629.9	4520	14	61	4	61	-4	multi-exon	FALSE	canonical	0	0	junction_1	0.745796901140974	40	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGAGGTGTGTCTGTATT	NA	False	NA	NA	False	NA	NA	NA	67106076	67040316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67042886_67044363_67044530_67045310_67045491_67050574_67050746_67052403_67052546_67052879_67053037_67061793_67061915_67066219_67066289_67066810_67066892_67067369_67067432_67071660_67071826_67099921_67100107_67102530_67102620_67105778
81923	chr16	+	5007	13	FSM	ENSMUSG00000033306.16	ENSMUST00000038053.14	15459	13	-23	10475	10	1073	multi-exon	FALSE	canonical	0	0	junction_3	3.30298686376774	22	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATATAATGTCTGTAAC	NA	False	NA	NA	False	NA	NA	NA	24212266	24800853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24212355_24261530_24261641_24275582_24275693_24378341_24378408_24426865_24427068_24480426_24480540_24500495_24500622_24580342_24581027_24663840_24663968_24708539_24708710_24790580_24790760_24795949_24796071_24797942
81924	chr8	+	3439	15	ISM	ENSMUSG00000054823.18	ENSMUST00000142395.8	10105	24	76440	4276	4288	421	3prime_fragment	FALSE	canonical	3	27	junction_6	7.12318720225485	10	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTTGATTTCCTAACTT	NA	False	NA	NA	False	NA	NA	NA	26168739	26205418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26168863_26169881_26170011_26170663_26170791_26172514_26172713_26173167_26173339_26181041_26181189_26184715_26184873_26188760_26188964_26189938_26190052_26190478_26190749_26196551_26196669_26199089_26199232_26200699_26200807_26203384_26203587_26204185
81925	chr17	+	2592	4	ISM	ENSMUSG00000023882.16	ENSMUST00000165230.8	2832	5	3528	482	3497	4	3prime_fragment	FALSE	canonical	3	19	junction_1	6.59966329107444	48	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTTTTGTTTTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	21647016	21655420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_21647634_21647998_21648091_21650456_21650584_21653664
81926	chr6	+	2584	16	NIC	ENSMUSG00000030270.12	novel	2777	21	NA	NA	1365	19	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	5.73643327047972	255	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAAAGCCTTCAATAATGA	NA	False	NA	NA	False	NA	NA	NA	113260690	113282551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113260944_113261345_113261423_113266945_113267010_113267127_113267232_113267365_113267471_113268998_113269041_113269326_113269403_113269482_113269537_113269963_113270026_113270669_113270717_113271572_113271755_113271986_113272115_113277523_113277627_113278600_113278659_113279009_113279084_113281396
81927	SIRV4	-	579	2	FSM	SIRV4B	SIRV406	617	2	0	38	0	-38	multi-exon	FALSE	canonical	3	2584	junction_1	0	6647	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTTACAGTTTAGAAG	NA	False	NA	NA	False	NA	NA	NA	5158	3675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4_-_4104_5007
81928	chr18	+	3256	30	FSM	ENSMUSG00000024589.19	ENSMUST00000236736.2	4802	30	118	1428	28	-8	multi-exon	TRUE	canonical	3	102	junction_13	18.1799042339286	75	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGTACTTGGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	65021146	65346370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_65021167_65130418_65130493_65207794_65207877_65210768_65210808_65213088_65213143_65276866_65276918_65288326_65288389_65288716_65288820_65290915_65291083_65294585_65294722_65296065_65296243_65298642_65298718_65305345_65305478_65305986_65306107_65307115_65307314_65311989_65312068_65314398_65314454_65319396_65319456_65324507_65324574_65326146_65326377_65328130_65328253_65328985_65329057_65331701_65331798_65336946_65337021_65338703_65338765_65341119_65341180_65341462_65341571_65342723_65342821_65343333_65343407_65345854
81929	chrX	-	2859	10	NIC	ENSMUSG00000031310.17	novel	5178	24	NA	NA	10	-318	intron_retention	FALSE	canonical	3	78	junction_2	24.92556821052	263	29	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCTGGATGGCAGCACCT	NA	False	NA	NA	False	NA	NA	NA	100463425	100457167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100457268_100457509_100457661_100457780_100457868_100458027_100458144_100458353_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
81930	chr17	-	2396	7	NIC	ENSMUSG00000036568.8	novel	6575	11	NA	NA	-38	629	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	45.4266808531433	8	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGTAAACCAAAGGTCACA	NA	False	NA	NA	False	NA	NA	NA	47123149	47110948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_47112756_47117477_47117581_47118321_47118417_47119274_47119421_47120493_47120553_47122849_47122951_47123064
81931	chr15	+	5345	5	Antisense	novelGene_ENSMUSG00000089715.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	160	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATACTCCCTGCTCCCGCGG	NA	False	NA	NA	False	NA	NA	NA	79708110	79718438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79713178_79717707_79717782_79717903_79717967_79718113_79718159_79718342
81932	chr7	-	2152	13	Antisense	novelGene_ENSMUSG00000005566.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	60	36	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGAGTCTTAGCAGGTCC	NA	False	NA	NA	False	NA	NA	NA	12764959	12761562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_12761686_12761763_12761877_12761947_12762060_12762331_12762479_12762586_12762705_12762806_12762913_12763012_12763178_12763267_12763521_12763600_12763922_12764008_12764133_12764214_12764301_12764379_12764518_12764613
81933	chr10	+	3105	2	Antisense	novelGene_ENSMUSG00000069662.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	283	13	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGATGAATGGGCTCGC	NA	False	NA	NA	False	NA	NA	NA	37009246	37014920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_37012131_37014699
81934	chr14	+	1064	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-182	690	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAGATAT	NA	False	NA	NA	False	NA	NA	NA	13669255	13670463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669765_13669908
81935	chr9	-	3445	15	NNC	ENSMUSG00000013076.18	novel	3046	14	NA	NA	-18059	-125	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_14	4.0082822418852	10	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACGCATGTAGGCTTGG	193	False	NA	NA	False	NA	NA	NA	14574411	14458925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_14459195_14459826_14460103_14461687_14461918_14462917_14463044_14466869_14467061_14469754_14469905_14473370_14473517_14482918_14483009_14483970_14484116_14486446_14486736_14504049_14505008_14507746_14507897_14545197_14545249_14556215_14556343_14574164
81936	chr3	-	4485	7	FSM	ENSMUSG00000040151.10	ENSMUST00000043325.9	6177	7	275	1417	-25	-1417	multi-exon	FALSE	canonical	3	89	junction_1	15.667553166408	53	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTTGAAAAATCTAAAA	NA	False	NA	NA	False	NA	NA	NA	144275667	144136883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_144140476_144141222_144141381_144143355_144143454_144153030_144153170_144159712_144159799_144170807_144171047_144275494
81937	chr5	+	6203	15	NNC	ENSMUSG00000038582.16	novel	4644	6	NA	NA	17936	29908	intron_retention	FALSE	non_canonical	0	0	junction_4	66.3569506378886	100	17	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCATGGAGGGCGCAAGC	NA	False	NA	NA	False	NA	NA	NA	122451770	122492252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_122451857_122455173_122455298_122457776_122457907_122458878_122463528_122463943_122464043_122469531_122469756_122471352_122471479_122472324_122472396_122472478_122472583_122477798_122477904_122482262_122482358_122489318_122489437_122489623_122489774_122490606_122490678_122492201
81938	chr12	-	4847	19	ISM	ENSMUSG00000034801.14	ENSMUST00000183277.8	4512	23	41582	-1086	-23140	-1	3prime_fragment	TRUE	canonical	3	44	junction_4	9.30501656813857	43	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGATTTGCAATATTGT	NA	False	NA	NA	False	NA	NA	NA	69687033	69630540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_69632407_69633382_69633493_69635473_69635516_69637468_69637731_69639705_69639823_69643417_69643591_69645549_69645668_69650249_69650413_69650558_69650679_69653963_69654187_69657496_69657601_69661409_69661533_69663056_69663139_69663627_69664284_69664829_69664958_69673990_69674090_69678833_69678945_69682355_69682500_69686827
81939	chr1	-	5975	17	NIC	ENSMUSG00000034212.15	novel	1809	3	NA	NA	3228	1864	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	3.07967124868873	33	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGGCTTGGTGATGTC	NA	False	NA	NA	False	NA	NA	NA	92827400	92785660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_92785753_92786053_92789125_92798530_92798692_92799394_92799471_92804256_92804423_92804732_92804847_92806052_92806185_92807036_92807145_92808701_92808843_92809472_92809614_92811463_92811636_92812556_92812988_92813857_92814017_92814344_92814562_92816168_92816639_92823790_92823935_92827220
81940	chr5	+	1616	4	NNC	ENSMUSG00000036323.15	novel	2297	17	NA	NA	-1	-506	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	140.290967476725	9	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGGGTTCACAAGGCT	NA	False	NA	NA	False	NA	NA	NA	77122552	77147278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77122680_77124244_77124334_77145269_77145430_77146038
81941	chr1	-	4458	1	Genic_Genomic	ENSMUSG00000042414.8	novel	NA	NA	NA	NA	-1025	-10274	mono-exon	FALSE	NA	NA	NA	NA	NA	8	69	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGGCTCAAATAAGACCT	NA	False	NA	NA	False	NA	NA	NA	13198412	13193954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_13194000_13198400
81942	chr5	-	3112	4	NIC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	8099	-10	intron_retention	FALSE	canonical	3	1465	junction_2	70.2772288076934	2	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGACCCCCTCCTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	24774366	24770352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24771681_24772181_24772311_24772498_24773856_24774068
81944	chr13	-	2855	1	Intergenic	novelGene_1322	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTTGTGAAAACATGAATT	NA	False	NA	NA	False	NA	NA	NA	21950397	21947542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_21947500_21950400
81946	chr1	-	2704	2	Antisense	novelGene_ENSMUSG00000044835.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAGACCGTTTCTCATGA	NA	False	NA	NA	False	NA	NA	NA	160976239	160973203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_160974976_160975307
81947	chr10	+	2942	2	FSM	ENSMUSG00000019826.12	ENSMUST00000216656.2	2476	2	-60	-406	-8	406	multi-exon	FALSE	canonical	3	104	junction_1	0	67	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAATCTAATTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	41326370	41329870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41326527_41327084
81948	chr1	+	10356	27	Antisense	novelGene_ENSMUSG00000102837.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	76	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGCTAGTTTCTTAGCC	NA	False	NA	NA	False	NA	NA	NA	155720710	155804548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_155724477_155733771_155733894_155735916_155736061_155736180_155736586_155737392_155739358_155741785_155741874_155744419_155744554_155747654_155747816_155751067_155751213_155754655_155754864_155761651_155761851_155770337_155770500_155773179_155773327_155776530_155776617_155777182_155777370_155778331_155778530_155782234_155782399_155784949_155785075_155786362_155786501_155786881_155787021_155787631_155787744_155790460_155790624_155791192_155791405_155798066_155798250_155800312_155800484_155802159_155802301_155803857
81949	chr16	-	1529	6	NNC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	-90	-2	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	5048.94469765713	103	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCTGACAAGGCTATG	7043	False	NA	NA	False	NA	NA	NA	18066686	18057649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18058058_18058757_18058824_18059252_18059738_18063064_18063223_18065152_18065290_18066411
81950	chr9	-	4793	6	ISM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	12725	1872	-131	-1872	3prime_fragment	FALSE	canonical	3	232	junction_1	24.3836010466051	244	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTACAATACATGACCGC	NA	False	NA	NA	False	NA	NA	NA	122929545	122903246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327
81951	chr11	+	4382	11	NNC	ENSMUSG00000045980.14	novel	4564	10	NA	NA	-16	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	14.0032139168121	76	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTATTACCCACGGTTGT	NA	False	NA	NA	False	NA	NA	NA	115078360	115137837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115078425_115079035_115079149_115088061_115088184_115091645_115091728_115092141_115092239_115092957_115093039_115095887_115095988_115096300_115096410_115119246_115119341_115134195_115135637_115135758
81953	chrX	+	4045	7	FSM	ENSMUSG00000073016.4	ENSMUST00000087867.6	2304	7	-12	-1729	-12	1729	multi-exon	FALSE	canonical	2	8	junction_1	1.67497927018682	17	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCATAAGGATTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	103526411	103552825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_103526956_103539341_103539385_103541880_103541951_103543009_103543073_103545350_103545513_103547934_103548034_103549761
81954	chr7	+	2138	9	ISM	ENSMUSG00000025504.15	ENSMUST00000140025.8	3341	20	18292	63	-748	-63	3prime_fragment	FALSE	canonical	3	76	junction_7	9.73396116696589	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACCCAGAGATGAGAGTG	NA	False	NA	NA	False	NA	NA	NA	140937160	140942870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
81955	chr15	-	5132	26	Antisense	novelGene_ENSMUSG00000064566.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	64	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTACACATTCTCACTGA	NA	False	NA	NA	False	NA	NA	NA	8300642	8248267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_8248878_8250339_8250452_8251266_8251428_8251815_8251892_8252552_8252633_8256394_8256576_8256767_8257050_8258071_8258814_8259697_8259852_8260593_8260724_8261527_8261584_8263246_8263350_8271750_8271825_8273286_8273396_8273703_8273896_8274090_8274244_8276387_8276738_8280458_8280547_8281630_8281801_8289190_8289347_8290000_8290169_8291809_8291868_8292409_8292563_8293810_8293924_8299100_8299280_8300160
81956	chr10	-	3604	13	FSM	ENSMUSG00000048661.15	ENSMUST00000119944.8	4743	13	1135	4	1135	-4	multi-exon	FALSE	canonical	3	97	junction_12	16.3112095062125	115	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACATGCGTCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	120814102	120759321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_120761462_120761671_120761751_120761839_120761946_120763850_120763933_120766946_120767126_120767625_120767729_120767832_120767935_120769299_120769446_120769534_120769615_120783108_120783177_120785201_120785269_120788122_120788161_120813688
81958	chr17	+	952	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	-17	-18	-13	18	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	1026	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGTCCTTTCCCTTCTT	354	False	NA	NA	False	NA	NA	NA	57304325	57306340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
81959	chr4	-	6075	40	ISM	ENSMUSG00000033253.19	ENSMUST00000075406.12	10965	72	24472	0	5132	0	3prime_fragment	FALSE	canonical	1	1	junction_33	8.94868121364879	30	39	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCAGTGTGATTTTAATT	6931	False	NA	NA	False	NA	NA	NA	118241998	118219939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_118220669_118220812_118220882_118221798_118221916_118222036_118222443_118222545_118222669_118222824_118222979_118223298_118223513_118226376_118226452_118226540_118226622_118226814_118226906_118229016_118229217_118229318_118229445_118229526_118229607_118229713_118229982_118230151_118230329_118230400_118230502_118230621_118230753_118230940_118231074_118231155_118231254_118231369_118231537_118232187_118232322_118232654_118232823_118232925_118233091_118233239_118233325_118233529_118233695_118233799_118233919_118234860_118234973_118235063_118235170_118235262_118235366_118235444_118235598_118237363_118237494_118238550_118238651_118239780_118239983_118240154_118240227_118240343_118240432_118240507_118240676_118241001_118241188_118241377_118241442_118241668_118241777_118241891
81960	chr3	+	1084	7	Antisense	novelGene_ENSMUSG00000000563.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGCTCGCACATCTCGCG	NA	False	NA	NA	False	NA	NA	NA	105850013	105866579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_105850382_105851004_105851183_105858957_105859035_105861335_105861497_105863210_105863357_105866176_105866215_105866463
81961	chr17	-	2079	6	NNC	ENSMUSG00000024218.14	novel	3457	6	NA	NA	36	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	61.2483469164679	439	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACAGGGTTTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	28128077	28120103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127226_28127743
81962	chr13	-	1468	2	NIC	ENSMUSG00000015672.5	novel	3013	3	NA	NA	-41	59	intron_retention	FALSE	canonical	3	1113	junction_1	0	32	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATGTAAAGGCTCAAT	NA	False	NA	NA	False	NA	NA	NA	14787653	14784898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14786190_14787476
81963	chr1	-	3365	5	ISM	ENSMUSG00000070939.10	ENSMUST00000186694.7	5385	12	36007	103	4211	-103	3prime_fragment	FALSE	canonical	3	42	junction_2	3.93700393700591	2	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACAAGATGTACAAATGTAA	2773	False	NA	NA	False	NA	NA	NA	43095882	43086482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_43088996_43090717_43091152_43092570_43092731_43093678_43093826_43095771
81964	chr16	-	481	5	NNC	ENSMUSG00000022956.12	novel	838	7	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2739.39577051218	11	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCGTGAGGAGCCTTGT	935	False	NA	NA	False	NA	NA	NA	91728451	91722106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91722252_91723740_91723871_91725786_91725898_91727241_91727293_91728407
81965	chr6	+	1433	6	NNC	ENSMUSG00000029910.15	novel	7557	6	NA	NA	-82	84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	369.381970323404	94	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTGAGTGGATGGATT	NA	False	NA	NA	False	NA	NA	NA	66512291	66518088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66517062_66517626
81966	chr15	-	7091	34	FSM	ENSMUSG00000016028.12	ENSMUST00000226840.2	6802	34	-303	14	-303	-14	multi-exon	TRUE	canonical	3	17	junction_3	10.9215417163463	63	27	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGGATTTGTACCCGT	NA	False	NA	NA	False	NA	NA	NA	85863234	85783144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_85784940_85785137_85785400_85785639_85785871_85786315_85786466_85786649_85786754_85787002_85787098_85787486_85787613_85788126_85788254_85789639_85789720_85790115_85790229_85791795_85791971_85800814_85801016_85803109_85803237_85805348_85805517_85806323_85806529_85808258_85808403_85809596_85809781_85810286_85810497_85811131_85811227_85812098_85812201_85812515_85812700_85813601_85813723_85814032_85814175_85814713_85814889_85815442_85815557_85816484_85816671_85822044_85822212_85823302_85823429_85823747_85823912_85825317_85825476_85843328_85843418_85844267_85844384_85847284_85847508_85862802
81967	SIRV3	+	1216	2	FSM	SIRV3A	SIRV302	1807	2	-1	592	-1	512	multi-exon	FALSE	canonical	3	834	junction_1	0	1	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATAATCAAAAGATAGAGC	NA	False	NA	NA	False	NA	NA	NA	1962	7230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_6057
81968	chr11	+	5145	10	Antisense	novelGene_ENSMUSG00000020841.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	26	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCCTTCCAAGCCATTC	NA	False	NA	NA	False	NA	NA	NA	76669251	76688518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_76673239_76675214_76675311_76675842_76676025_76677091_76677228_76681651_76681718_76681820_76681915_76682684_76682819_76683555_76683698_76686266_76686463_76688406
81969	chr8	+	2419	11	NNC	ENSMUSG00000038482.12	novel	2511	12	NA	NA	4	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	410.143340796849	1	128	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATGGGCATTTTAAACAAG	3017	False	NA	NA	False	NA	NA	NA	13389664	13428429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13389740_13407042_13407110_13415088_13415183_13419458_13419581_13420484_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
81970	chr13	-	1754	2	Genic_Genomic	ENSMUSG00000042857.4	novel	2980	1	NA	NA	33	8	multi-exon	FALSE	canonical	0	0	junction_1	0	241	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTCTTAGTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	94495398	94493246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_94493994_94494391
81971	chr16	-	3391	17	ISM	ENSMUSG00000022974.13	ENSMUST00000118522.8	3973	18	1904	2	1525	-2	3prime_fragment	FALSE	canonical	3	98	junction_10	95.3346080917103	148	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTTGTTGTATCTTGCT	NA	False	NA	NA	False	NA	NA	NA	90839527	90810926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827320_90827445_90830985_90831176_90831687_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440
81972	chrX	-	1957	7	NNC	ENSMUSG00000073291.4	novel	117	2	NA	NA	-508	8327	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	39	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCTCTGAGGCGCTGTA	NA	False	NA	NA	False	NA	NA	NA	7774582	7765604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7765708_7767198_7767300_7769911_7769974_7772307_7772456_7772566_7772630_7772725_7773994_7774370
81973	chr17	-	2779	5	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	0	317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.547609321244	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTGTGTGTATTTTG	4817	False	NA	NA	False	NA	NA	NA	25179619	25161126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25161395_25161511_25163653_25167611_25167755_25174991_25175141_25179541
81974	chr7	-	1215	6	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	12	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	729.62823410282	47	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGATATGAGTGTATCCA	NA	False	NA	NA	False	NA	NA	NA	28879965	28873617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876610_28878576_28878641_28879701
81975	chr1	+	842	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9512.68242342237	114	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454443	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457224_86457927
81976	chr1	-	2136	1	NIC	ENSMUSG00000040225.16	novel	11289	35	NA	NA	1583	-605	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTTTCCCTAATTATCC	NA	False	NA	NA	False	NA	NA	NA	162550854	162548718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_162548700_162550900
81977	chr8	-	6433	10	NNC	ENSMUSG00000097491.2	novel	3982	2	NA	NA	-1641	81969	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	30	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGCGGCTGGGGGGAGGG	NA	False	NA	NA	False	NA	NA	NA	45477063	45388283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_45388657_45403230_45406517_45441965_45442280_45460275_45460347_45462834_45463163_45463437_45463648_45465999_45466137_45470397_45470677_45470870_45471080_45475837
81978	chr3	-	643	5	ISM	ENSMUSG00000027944.14	ENSMUST00000198782.2	855	7	862	-166	835	-2	3prime_fragment	FALSE	canonical	3	1706	junction_4	132.201550671692	99	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGGTCTTAGTCTTGG	8360	False	NA	NA	False	NA	NA	NA	89904834	89902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693
81979	chr5	-	5101	18	ISM	ENSMUSG00000070733.14	ENSMUST00000202697.4	5743	21	5705	209	-237	126	3prime_fragment	FALSE	canonical	3	30	junction_13	5.32994413650555	68	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTGGTTTGTGTGGTATT	NA	False	NA	NA	False	NA	NA	NA	73222813	73177538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_73179641_73179844_73180036_73181230_73181342_73184658_73184728_73190100_73190200_73190938_73191089_73192288_73192497_73198688_73198937_73204862_73205028_73207644_73207849_73211395_73211573_73211872_73211948_73212058_73212221_73212867_73213066_73215066_73215208_73216721_73216893_73221848_73221947_73222281
81980	chr6	-	4111	1	Genic_Genomic	ENSMUSG00000086212.8	novel	NA	NA	NA	NA	11185	-421	mono-exon	FALSE	NA	NA	NA	NA	NA	226	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGTGGTGGTGCAAATA	NA	False	NA	NA	False	NA	NA	NA	31364503	31360392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_31360400_31364500
81981	chr14	+	3378	8	NIC	ENSMUSG00000037628.11	novel	917	8	NA	NA	8	2480	combination_of_known_junctions	FALSE	canonical	3	194	junction_1	23.9395497204172	817	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGAATGGGCTGGATA	NA	False	NA	NA	False	NA	NA	NA	46998019	47011606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
81982	chr12	-	5387	12	ISM	ENSMUSG00000020647.11	ENSMUST00000085814.5	7329	23	181067	0	17007	0	3prime_fragment	FALSE	canonical	3	77	junction_1	12.6654341868132	60	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCTGCCTCTTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	4346115	4297361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_4299751_4299835_4299891_4303656_4303747_4309211_4309396_4313433_4313609_4317606_4318010_4320746_4320849_4324693_4325009_4325172_4325342_4328101_4328220_4340813_4340995_4344909
81983	chr9	-	3980	6	ISM	ENSMUSG00000032561.16	ENSMUST00000062723.14	4483	11	21297	-5	-15206	5	3prime_fragment	TRUE	canonical	1	1	junction_5	1.67332005306815	26	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATTTGTAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	104193630	104165444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_104168729_104178014_104178185_104184083_104184188_104186608_104186692_104191506_104191640_104193424
81984	chr4	-	1547	7	Antisense	novelGene_ENSMUSG00000006442.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	582	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCGGGGCCGGGCGCGGC	NA	False	NA	NA	False	NA	NA	NA	148679446	148676120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_148676238_148676494_148676620_148676936_148677030_148677742_148677898_148678223_148678454_148678538_148678660_148678740
81985	chr3	+	5249	5	ISM	ENSMUSG00000069114.9	ENSMUST00000155203.2	7414	6	14605	14	14605	-14	3prime_fragment	FALSE	canonical	3	53	junction_4	6.37867541108654	117	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAGCACTAAACTGCTT	NA	False	NA	NA	False	NA	NA	NA	9330266	9350379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_9330481_9343313_9343413_9345015_9345193_9345350_9345524_9345793
81986	chr7	+	2170	1	Genic_Genomic	ENSMUSG00000047751.10	novel	NA	NA	NA	NA	-20	826	mono-exon	FALSE	NA	NA	NA	NA	NA	1510	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAATAAGTTGCTAAAACC	NA	False	NA	NA	False	NA	NA	NA	139523681	139525851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_139523700_139525900
81987	chr7	-	2443	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	-21	-1616	-16	441	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	963	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATAAATGTGTTCTGC	NA	False	NA	NA	False	NA	NA	NA	89590428	89566295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
81988	chr8	-	1649	11	NIC	ENSMUSG00000031708.18	novel	1158	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	3555	junction_3	297.072802524903	57	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	84321106	84298328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299953_84300039_84300552_84301106_84301158_84320968
81989	chr2	+	4484	9	ISM	ENSMUSG00000015846.16	ENSMUST00000238913.2	1631	10	12222	-3250	-2760	-19	3prime_fragment	FALSE	canonical	3	68	junction_1	10.5800519847494	75	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCCATTCGGTTCTCAT	2255	False	NA	NA	False	NA	NA	NA	27627452	27652950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_27627577_27631064_27631216_27631775_27631956_27638623_27638794_27642323_27642454_27644234_27644368_27646210_27646303_27647772_27647879_27649552
81990	chrX	-	4687	11	NNC	ENSMUSG00000046873.19	novel	4797	11	NA	NA	225	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	88.8322013686478	4	171	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTCTGTATCATATTT	NA	False	NA	NA	False	NA	NA	NA	156381414	156330819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342064_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381306
81991	chr7	-	2864	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	-8	-7	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	149	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTCCAGGTGTCTTCTC	527	False	NA	NA	False	NA	NA	NA	67295024	67163166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
81992	chr4	-	1506	6	FSM	ENSMUSG00000006699.18	ENSMUST00000030417.10	1448	6	-63	5	-42	-5	multi-exon	FALSE	canonical	3	65	junction_1	708.103664727136	304	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACGCCTGGTGAAGCTT	NA	False	NA	NA	False	NA	NA	NA	137085073	137049077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137049931_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
81993	chr9	+	3312	11	Antisense	novelGene_ENSMUSG00000041729.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGGACCAGAAGAGGCG	NA	False	NA	NA	False	NA	NA	NA	62326681	62396725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_62328696_62333072_62333213_62333422_62333514_62333812_62333930_62335221_62335314_62336229_62336338_62336509_62336631_62338589_62338751_62339640_62339784_62361805_62361930_62396524
81994	chr11	-	3975	18	ISM	ENSMUSG00000052949.15	ENSMUST00000100202.10	4619	19	16727	306	-8872	-306	3prime_fragment	TRUE	canonical	3	28	junction_1	6.56086752639938	26	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCACAGACTCAAACCCTAA	5372	False	NA	NA	False	NA	NA	NA	116287103	116227484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116229657_116235020_116235132_116236732_116236782_116237858_116237925_116238167_116238338_116238681_116238794_116240159_116240269_116240785_116241025_116245190_116245304_116245461_116245622_116246270_116246343_116249494_116249543_116249761_116249806_116250068_116250136_116250638_116250757_116251079_116251227_116253110_116253200_116287014
81995	chr7	-	2824	8	NNC	ENSMUSG00000025103.9	novel	3001	8	NA	NA	-113137	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	280.91773797716	199	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGTCACCTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	81592316	81441821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81592034
81996	chr14	-	2488	13	FSM	ENSMUSG00000022185.20	ENSMUST00000150371.8	2494	13	9	-3	-6	-2	multi-exon	FALSE	canonical	3	46	junction_12	131.761437412047	356	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTGAGTGCCTTTCCTT	3766	False	NA	NA	False	NA	NA	NA	54891130	54879620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54890991
81997	chr1	+	1202	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-3	17	-3	-17	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	4	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	86454444	86458417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
81998	chr7	-	1893	7	Antisense	novelGene_ENSMUSG00000108815.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTACACTGTCAGGAAAA	8453	False	NA	NA	False	NA	NA	NA	127385180	127377292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_127377450_127377677_127377772_127379554_127379826_127382798_127382922_127383143_127383372_127384016_127384907_127385050
81999	chr2	+	1024	4	FSM	ENSMUSG00000027509.12	ENSMUST00000124793.2	558	4	-3	-463	-3	462	multi-exon	FALSE	canonical	3	1094	junction_3	36.2859017617954	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGCTGGTTCCATGG	NA	False	NA	NA	False	NA	NA	NA	172848433	172851700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_172848761_172849852_172849940_172850036_172850109_172851162
82000	chr8	+	1625	8	NIC	ENSMUSG00000031783.11	novel	1580	9	NA	NA	3	-4	intron_retention	FALSE	canonical	3	1933	junction_5	89.830679728076	738	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAATTGCTTTAATTG	NA	False	NA	NA	False	NA	NA	NA	95584148	95590866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589513_95590079
82001	chr7	+	4559	9	Antisense	novelGene_ENSMUSG00000042492.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	182	30	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCGAGGTCTGTGATGAT	102	False	NA	NA	False	NA	NA	NA	126795370	126807321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126798382_126798466_126798624_126798903_126799099_126799269_126799338_126799461_126799567_126802335_126802450_126802544_126802652_126802910_126803013_126806621
82002	chr13	-	2639	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	-26	-6	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	30.2438010177292	527	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTTCCTGAGCTTGG	NA	False	NA	NA	False	NA	NA	NA	47196646	47177024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
82003	chr12	-	2358	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	-60	-230	1	230	multi-exon	TRUE	canonical	3	69	junction_2	7.87400787401181	173	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATACATATATTTTATATA	NA	False	NA	NA	False	NA	NA	NA	99849761	99683560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
82004	chr4	+	5973	39	ISM	ENSMUSG00000005045.17	ENSMUST00000030775.12	9486	42	17428	2818	14484	-2805	3prime_fragment	TRUE	canonical	2	3	junction_10	3.0589770708885	17	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAAACCCTTAGTCTGCC	NA	False	NA	NA	False	NA	NA	NA	152440535	152471833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152440657_152441076_152441316_152442954_152443077_152444144_152444269_152445020_152445188_152445277_152445500_152447341_152447549_152447731_152447944_152450583_152450716_152450817_152450927_152451738_152451931_152452285_152452487_152454961_152455100_152455184_152455307_152456034_152456209_152456540_152456683_152457902_152458035_152458788_152458907_152459533_152459659_152460592_152460825_152461036_152461148_152461425_152461599_152462072_152462248_152462634_152462728_152462914_152463004_152463186_152463321_152463821_152463967_152464276_152464437_152464904_152464985_152465603_152465737_152466791_152466870_152467348_152467487_152467726_152467836_152468580_152468714_152468941_152469138_152469889_152470054_152470180_152470296_152470405_152470460_152471371
82005	chr9	+	3635	11	FSM	ENSMUSG00000032586.10_ENSMUSG00000032936.14	ENSMUST00000035700.14	3277	11	224	-582	0	582	multi-exon	FALSE	canonical	3	33	junction_4	7.3729234364667	64	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGGAGGACCTTAAATTA	NA	False	NA	NA	False	NA	NA	NA	107813096	107827472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823064_107823277_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
82006	chr17	+	3522	21	ISM	ENSMUSG00000033826.11	ENSMUST00000235627.2	13478	83	91834	64144	-2216	1395	internal_fragment	FALSE	canonical	2	15	junction_10	8.71708093343179	8	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGTTTCAGGTAGGATC	NA	False	NA	NA	False	NA	NA	NA	30937798	30971143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_30938042_30939972_30940173_30941872_30942027_30944055_30944220_30945759_30945863_30947136_30947242_30948054_30948217_30949987_30950213_30955002_30955176_30956224_30956404_30958541_30958730_30960100_30960188_30960281_30960390_30961629_30961765_30963487_30963650_30965731_30965979_30966120_30966363_30966820_30966962_30967481_30967720_30970420_30970564_30971020
82007	chr18	-	3710	15	FSM	ENSMUSG00000049411.16	ENSMUST00000209859.2	1426	15	13	-2297	-3	699	multi-exon	TRUE	canonical	3	13	junction_4	4.03871569806491	61	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTAATTTGCCTCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	12254574	12113835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12251460_12251508_12254437
82008	chr12	+	1602	13	NNC	ENSMUSG00000021222.10	novel	2008	14	NA	NA	-60	57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	74.8591269578325	2	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCCTCATCATAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	83567347	83588751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586246_83588373
82009	chrX	+	4658	6	FSM	ENSMUSG00000009731.5	ENSMUST00000009875.5	5287	6	32	597	14	-597	multi-exon	FALSE	canonical	3	15	junction_5	4.63033476111609	40	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTGGACTGAGCATCTAC	NA	False	NA	NA	False	NA	NA	NA	7688559	7703922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7691203_7697410_7697574_7697670_7697755_7697840_7697940_7698331_7698583_7702504
82010	chrX	+	4100	3	ISM	ENSMUSG00000031351.16	ENSMUST00000114546.9	3533	19	31445	36	30552	-36	3prime_fragment	FALSE	canonical	3	54	junction_1	9	3	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTACACAGCAGTATTATA	NA	False	NA	NA	False	NA	NA	NA	72062410	72075113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_72064577_72072450_72072550_72073278
82011	chr2	+	2326	10	NNC	ENSMUSG00000026749.12	novel	10338	10	NA	NA	35926	801	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	121.516447090837	1	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAAGTGCTGGAGGAAAC	8031	False	NA	NA	False	NA	NA	NA	38440563	38476579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38463276_38463454_38467250_38467346_38472394_38472509_38475291
82012	chr2	+	1719	1	ISM	ENSMUSG00000026749.12	ENSMUST00000054234.10	10338	10	74130	7115	71147	11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTGGACAATCACTATCC	2654	False	NA	-51	True	NA	NA	NA	38475784	38477503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_38475800_38477500
82013	chr11	-	2554	8	NIC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-913	-24	intron_retention	FALSE	canonical	3	911	junction_4	55.4653780593381	8	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGGTCAATAAAGGATCC	9309	False	NA	NA	False	NA	NA	NA	69570934	69563970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69569111_69569447_69569560_69569647
82014	chr12	-	1720	6	Antisense	novelGene_ENSMUSG00000010608.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGCCCTTGGTATAGTCC	NA	False	NA	NA	False	NA	NA	NA	83698481	83688302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_83689518_83691166_83691221_83692905_83693079_83694971_83695028_83698058_83698218_83698418
82015	chr9	+	3288	14	NNC	ENSMUSG00000074259.11	novel	1368	11	NA	NA	53	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	14.3213334475522	49	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGGTGTAGAAGTTT	1689	False	NA	NA	False	NA	NA	NA	59587479	59626156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59587536_59615282_59615379_59616734_59616793_59617144_59617221_59617784_59617889_59618448_59618548_59618827_59618900_59619366_59619463_59621078_59621224_59621459_59621557_59623205_59623311_59623490_59625142_59625435_59625714_59625801
82016	chr15	+	3509	1	Antisense	novelGene_ENSMUSG00000099083.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAACAAAATTCATAAG	NA	False	NA	NA	False	NA	NA	NA	102437079	102440588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_102437100_102440600
82017	chrX	-	2411	12	NNC	ENSMUSG00000040363.16	novel	6839	15	NA	NA	23833	-1019	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	52.658889825802	2	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTGGAAGCCTTCAATC	NA	False	NA	NA	False	NA	NA	NA	11922959	11904000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907736_11907908_11913094_11913353_11913661_11913988_11914541_11914785_11915233_11915492_11921207_11921395_11921877_11921932_11922582
82018	chr17	+	2080	19	FSM	ENSMUSG00000041119.13	ENSMUST00000047168.13	2089	19	8	1	8	1	multi-exon	FALSE	canonical	3	53	junction_18	8.45777456647338	158	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGGGTGTGCATGTGTCC	NA	False	NA	NA	False	NA	NA	NA	31605191	31695283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690829_31692131_31692254_31694898
82019	chr7	-	3283	6	Fusion	ENSMUSG00000050605.18_ENSMUSG00000074282.11	novel	2599	6	NA	NA	-6	541	multi-exon	FALSE	canonical	0	0	junction_5	4.35430821141545	34	35	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCAACAGCTTCCATCAT	NA	False	NA	NA	False	NA	NA	NA	24016013	24000587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_24003299_24008495_24008623_24010889_24010929_24011806_24011921_24013774_24013837_24015783
82020	chr3	-	10012	57	Intergenic	novelGene_3143	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	31	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGCGGGACTACCCCTAT	NA	False	NA	NA	False	NA	NA	NA	86689988	86131597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_86131789_86132373_86132809_86192297_86192533_86192937_86193041_86198732_86198830_86202395_86202517_86202607_86202734_86203550_86203673_86205171_86205317_86211540_86211744_86211908_86212038_86217263_86217375_86217691_86217845_86222640_86222810_86225399_86225477_86226862_86226929_86227809_86227909_86231034_86231133_86232315_86232420_86233005_86233090_86234903_86235035_86235473_86235669_86255430_86256474_86257551_86257731_86258507_86258663_86259133_86259316_86260974_86261102_86261503_86261614_86263893_86264053_86267036_86267487_86275808_86275943_86279382_86279462_86280740_86280877_86283211_86283272_86302525_86302591_86325192_86325302_86352611_86352779_86439389_86439516_86447208_86447356_86449880_86450016_86513173_86513293_86515652_86515761_86522279_86522392_86526813_86526928_86548795_86548939_86549959_86550083_86571746_86571895_86622816_86622986_86644386_86644478_86648710_86648887_86653104_86653169_86658831_86658987_86664685_86664856_86680405_86680507_86683302_86683500_86687416_86687569_86688875
82021	chr19	-	3940	3	FSM	ENSMUSG00000024640.10	ENSMUST00000161707.2	1572	3	-2378	10	-2378	-10	multi-exon	FALSE	canonical	3	2829	junction_2	366	12	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCATCTAAGCCATTCATT	NA	False	NA	NA	False	NA	NA	NA	15889454	15882503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664
82022	chr17	+	4285	5	Antisense	novelGene_ENSMUSG00000038002.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGGTCTTGTAACACT	NA	False	NA	NA	False	NA	NA	NA	25180205	25191334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_25183923_25187900_25188048_25189390_25189552_25190348_25190587_25191312
82023	chr5	+	833	2	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCACATAATCTGAGAGG	3020	False	NA	NA	False	NA	NA	NA	117420718	117423806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117421529_117423783
82024	chr19	+	4554	32	FSM	ENSMUSG00000024948.16	ENSMUST00000025897.13	4644	32	51	39	3	-36	multi-exon	FALSE	canonical	3	17	junction_1	5.41455240361839	37	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCACAAACCACACTGCAAT	1442	False	NA	NA	False	NA	NA	NA	6391240	6405606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6391376_6391488_6391547_6391773_6391865_6391932_6391998_6392284_6392341_6392639_6392688_6392773_6392817_6393133_6393207_6393284_6393417_6393490_6393554_6393831_6393914_6394001_6394110_6394436_6394516_6394619_6394679_6395348_6395393_6395473_6395513_6395606_6395641_6395757_6395867_6395945_6396035_6396113_6396156_6396238_6396324_6396417_6396498_6396574_6396636_6396721_6396840_6401209_6401269_6401344_6401449_6401526_6401705_6402613_6402683_6402804_6402892_6403149_6403221_6403307_6403364_6403469
82025	chr2	-	1965	11	NNC	ENSMUSG00000036352.17	novel	1852	10	NA	NA	35	197	at_least_one_novel_splicesite	FALSE	non_canonical	1	7	junction_10	241.607553689863	275	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCGCGTGCCACCACCT	NA	False	NA	NA	False	NA	NA	NA	25911724	25888357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408_25911620_25911668
82026	chr13	+	3153	2	Intergenic	novelGene_1396	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	24	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACATTTCCCAATCAATAA	NA	False	NA	NA	False	NA	NA	NA	62286366	62289753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62289222_62289455
82027	chr7	-	2562	14	NIC	ENSMUSG00000002981.11	novel	4143	14	NA	NA	2622	8	combination_of_known_junctions	FALSE	canonical	1	1	junction_13	424.291375822834	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCACCTCCTCTGCCT	7848	False	NA	NA	False	NA	NA	NA	19396258	19367165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19396069
82028	chr9	+	2259	1	Intergenic	novelGene_1042	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCACAGCTCCACGGAAG	NA	False	NA	NA	False	NA	NA	NA	53155353	53157612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_53155400_53157600
82029	chr7	-	3916	1	Genic_Genomic	ENSMUSG00000110357.2	novel	NA	NA	NA	NA	818	1648	mono-exon	FALSE	NA	NA	NA	NA	NA	39	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTTCTCTGTGTAGCC	NA	False	NA	NA	False	NA	NA	NA	45287371	45283455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_45283500_45287400
82030	chr4	-	3177	6	ISM	ENSMUSG00000040606.15	ENSMUST00000036476.10	3843	8	80275	3	-72	0	3prime_fragment	FALSE	canonical	3	169	junction_3	25.810075552001	119	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGAATTCTATGTGATT	NA	False	NA	NA	False	NA	NA	NA	141886437	141866553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141869108_141870604_141870656_141874328_141874457_141878156_141878347_141881740_141881912_141886354
82031	chr11	-	3797	3	ISM	ENSMUSG00000018509.9	ENSMUST00000123542.8	536	5	1262	-198	1262	1	intron_retention	FALSE	canonical	3	1520	junction_2	11	156	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTATGACATATTTCTT	5598	False	NA	NA	False	NA	NA	NA	62428049	62415770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_62416114_62418317_62418433_62424710
82032	chr5	-	964	3	NNC	ENSMUSG00000032959.13	novel	1240	4	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1321.5	58	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTATTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	117425651	117420715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117421388_117424195_117424310_117425473
82033	chr4	-	1421	8	NIC	ENSMUSG00000029048.4	novel	1803	8	NA	NA	23	-278	combination_of_known_junctions	FALSE	canonical	3	91	junction_7	617.350990035619	1493	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTGTTTGAGACTATT	NA	False	NA	NA	False	NA	NA	NA	155170805	155158844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167694_155170661
82035	chr16	-	3228	3	NNC	ENSMUSG00000051065.10	novel	3055	2	NA	NA	-56	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	127	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4741	False	NA	NA	False	NA	NA	NA	28748481	28644927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_28647778_28747022_28747124_28748204
82036	chr16	-	3022	1	Genic_Genomic	ENSMUSG00000022760.18	novel	NA	NA	NA	NA	41	6	mono-exon	FALSE	NA	NA	NA	NA	NA	7	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTTTGCAGTCCCTCT	7325	False	NA	NA	False	NA	NA	NA	17348861	17345839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_17345800_17348900
82037	chr15	-	401	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	-17	6	-17	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTAAGTTTGGCAAGAATG	NA	False	NA	NA	False	NA	NA	NA	73681762	73681361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_73681400_73681800
82038	chr7	+	1569	12	NNC	ENSMUSG00000015165.17	novel	1898	13	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2297.27822426223	27	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	NA	False	NA	NA	NA	28508241	28521674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28508285_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514740_28518278_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
82039	chr9	-	3959	10	Antisense	novelGene_ENSMUSG00000104344.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	406	43	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCGGGCCACTTCCGGT	NA	False	NA	NA	False	NA	NA	NA	104957099	104930466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_104930710_104931617_104931805_104932792_104932890_104934227_104934319_104939092_104939195_104941259_104941324_104948574_104948683_104950972_104951058_104952364_104952437_104954189
82040	chr5	+	3238	19	FSM	ENSMUSG00000029098.18	ENSMUST00000114237.8	2956	19	49	-331	-2	331	multi-exon	FALSE	canonical	3	8	junction_1	14.5314686197546	6	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCATCCTCCCAGAGT	NA	False	NA	NA	False	NA	NA	NA	35740443	35770282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_35740664_35741219_35741320_35745502_35745658_35745962_35746197_35746519_35746595_35747037_35747128_35749419_35749564_35751653_35751743_35755658_35755756_35757035_35757219_35758846_35758970_35760264_35760386_35761957_35762081_35762550_35762665_35764425_35764542_35765601_35765777_35766363_35766432_35767079_35767167_35769358
82041	chr2	+	1975	8	FSM	ENSMUSG00000027287.15	ENSMUST00000028743.10	2658	8	14	669	8	-669	multi-exon	FALSE	canonical	3	42	junction_1	118.449334729914	3	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAGAAAGCTGTATTAGC	NA	False	NA	NA	False	NA	NA	NA	120398185	120431067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_120398243_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
82042	chr2	-	3218	6	NIC	ENSMUSG00000038671.16	novel	1087	7	NA	NA	-12	583	intron_retention	FALSE	canonical	3	271	junction_5	21.0675105316219	5	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGCCTGTCTAACCATC	6201	False	NA	NA	False	NA	NA	NA	181007072	181000309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_181001355_181001431_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
82043	chr7	-	1083	1	ISM	ENSMUSG00000043866.12	ENSMUST00000141116.2	4281	5	3880	6	3129	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATTTTCATCCCCTAA	6548	False	NA	NA	False	NA	NA	NA	105389688	105388605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_105388600_105389700
82044	chr12	+	2665	1	Intergenic	novelGene_4435	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGCCTTAGGATCCTGG	NA	False	NA	NA	False	NA	NA	NA	86539863	86542528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_86539900_86542500
82045	chr3	+	3430	17	NNC	ENSMUSG00000033386.11	novel	2377	17	NA	NA	6625	1303	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	85.255864900897	1	202	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGATACTTTTTCAGCTGAT	NA	False	NA	NA	False	NA	NA	NA	116659840	116698430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717_116698128_116698203
82046	chr6	-	4642	24	Antisense	novelGene_ENSMUSG00000001930.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	22	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACATGGCCTGTAGGGG	NA	False	NA	NA	False	NA	NA	NA	125622932	125565390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_125565597_125567141_125567262_125568109_125568223_125568594_125568640_125575440_125575579_125576211_125576347_125577585_125577692_125580284_125580482_125581090_125581301_125585051_125585305_125590996_125591093_125592922_125593083_125601500_125601603_125603193_125603335_125605301_125605437_125608057_125608203_125612513_125612657_125612828_125612942_125614336_125614500_125614927_125615086_125616222_125616360_125618995_125620374_125622596_125622716_125622803
82047	chr6	+	1027	1	Intergenic	novelGene_4235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTATGTAGCCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	119385466	119386493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_119385500_119386500
82048	chr17	-	2497	5	NNC	ENSMUSG00000024096.18	novel	2370	8	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.896448525706	8	61	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGGCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	66191397	66155420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_66156757_66168378_66168601_66171268_66171728_66174526_66174826_66191216
82049	chr3	+	2129	3	Fusion	ENSMUSG00000032952.12_ENSMUSG00000084997.8	novel	1235	4	NA	NA	-379	1100	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACCCGGAAAGCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	103710065	103716855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_103711371_103714708_103714891_103716213
82050	chr9	-	1308	4	NNC	ENSMUSG00000025894.12	novel	2519	5	NA	NA	-17	-998	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	409.473103173117	6	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAAGTCTGTCGTCTTAG	-20	True	NA	NA	False	NA	NA	NA	4309488	4295962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309291
82051	chr7	-	1713	2	Antisense	novelGene_ENSMUSG00000050917.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTGCTCATGGCCACGA	NA	False	NA	NA	False	NA	NA	NA	144418196	144416054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_144416072_144416500
82052	chr7	-	568	3	Antisense	novelGene_ENSMUSG00000050917.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACGTTGCAGTAGAGCCG	NA	False	NA	NA	False	NA	NA	NA	144416777	144415501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_144415570_144415968_144416089_144416397
82053	chrX	-	4250	13	NNC	ENSMUSG00000033906.6	novel	5509	12	NA	NA	65	-1248	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	36.636635428974	132	63	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTTCCCCTCGCTGAAC	NA	False	NA	NA	False	NA	NA	NA	103714605	103581822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_103584775_103588433_103588511_103592686_103592741_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
82054	chr9	+	4645	5	ISM	ENSMUSG00000038145.18	ENSMUST00000120173.9	4758	6	19604	7	19155	-7	3prime_fragment	FALSE	canonical	3	26	junction_3	4.7169905660283	27	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGAAGCCGAGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	121965972	121998761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_121966668_121986221_121986364_121989388_121989602_121992982_121993118_121995301
82055	chr15	+	2786	7	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	7.7817450199525	84	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAAGCGTGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	61909877	62122824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_61910051_61978996_61979315_62047315_62047398_62114022_62114151_62114282_62114411_62116567_62116707_62121006
82056	chr3	-	2455	16	NNC	ENSMUSG00000033161.11	novel	3679	23	NA	NA	-1522	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	104.268797932182	18	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTTTGAGTCCTTGTC	NA	False	NA	NA	False	NA	NA	NA	101497877	101483538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494225_101496321_101496432_101497082_101497282_101497762
82057	chr10	+	4375	10	FSM	ENSMUSG00000039891.7	ENSMUST00000037964.7	4422	10	32	15	32	-15	multi-exon	FALSE	canonical	1	5	junction_4	2.43938871112224	26	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATTTCTTCCAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	17672035	17721398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_17672170_17674835_17675282_17682512_17682605_17690976_17691148_17703539_17703735_17705983_17706104_17709025_17709101_17714655_17714749_17717173_17717270_17718445
82058	chr5	+	2401	2	ISM	ENSMUSG00000029714.12	ENSMUST00000031727.10	5440	24	6558	7	6558	-7	3prime_fragment	FALSE	canonical	3	77	junction_1	0	256	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTACCTTGTCTGCCAG	6228	False	NA	NA	False	NA	NA	NA	137523697	137526190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_137523822_137523913
82059	chr1	-	3108	15	ISM	ENSMUSG00000097993.8	ENSMUST00000183317.8	6108	37	4467	10285	135	7575	internal_fragment	FALSE	canonical	1	1	junction_11	2.21888922385844	14	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTTCTACCCAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	135055865	135046520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_135046611_135046966_135047108_135047403_135047686_135047994_135048262_135048439_135048704_135050069_135050343_135051276_135051553_135051685_135051932_135052032_135052288_135052980_135053245_135053442_135053713_135053873_135054147_135054314_135054364_135054753_135054821_135055774
82060	chr10	+	4864	2	Antisense	novelGene_ENSMUSG00000020137.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	38	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCGCCTTCACCAACATGG	NA	False	NA	NA	False	NA	NA	NA	115204307	115220427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_115208848_115220103
82061	chr11	+	2035	7	NNC	ENSMUSG00000069844.13	novel	2412	6	NA	NA	10	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	109.193126564308	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGAGTAAG	NA	False	NA	NA	False	NA	NA	NA	66943505	66956165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731_66955426_66955559
82062	chr19	+	4713	2	Antisense	novelGene_ENSMUSG00000074746.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAAATTCCCTTTTATTA	1337	False	NA	NA	False	NA	NA	NA	59285563	59293725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_59290139_59293587
82063	chr13	-	3951	9	FSM	ENSMUSG00000021371.6	ENSMUST00000021800.6	4339	9	372	16	372	-16	multi-exon	FALSE	canonical	3	180	junction_1	32.5720355519885	105	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTTTCTTTCTTAACCTG	NA	False	NA	NA	False	NA	NA	NA	43713265	43691884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_43695206_43697931_43698047_43699163_43699218_43702126_43702199_43703007_43703050_43704472_43704575_43705072_43705177_43708371_43708492_43713244
82064	chr5	-	373	2	Genic_Genomic	ENSMUSG00000060419.9	novel	441	1	NA	NA	-54	-61	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAATCCAAAAAGTTTGGAG	NA	False	NA	NA	False	NA	NA	NA	129205635	129205201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_129205209_129205269
82065	chr8	-	3733	5	ISM	ENSMUSG00000090290.3	ENSMUST00000170518.3	6383	30	46033	-1315	46033	1315	3prime_fragment	FALSE	canonical	3	49	junction_2	2.1650635094611	22	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGATATCCCTCACATTT	NA	False	NA	NA	False	NA	NA	NA	127155771	127150752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_127153880_127154161_127154299_127154556_127154682_127154813_127155006_127155619
82066	chr10	+	5000	18	Antisense	novelGene_ENSMUSG00000020067.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	32	13	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGCATGCTGTAACAAAA	4536	False	NA	NA	False	NA	NA	NA	62951578	63029053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62952799_62954192_62954334_62955807_62955974_62957680_62957896_62959056_62959177_62961447_62961527_62963405_62963555_62966759_62966986_62970713_62970851_62971486_62972075_62981614_62981987_62983654_62983784_62988562_62988720_62998002_62998075_62999293_62999404_63003011_63003061_63005027_63005208_63028163
82067	chr5	+	2515	6	FSM	ENSMUSG00000029518.16	ENSMUST00000031492.15	2820	6	268	37	35	-37	multi-exon	FALSE	canonical	3	206	junction_5	16.4438438328756	192	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATACTAAAAATAAAGGT	NA	False	NA	NA	False	NA	NA	NA	115770234	115785758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115770258_115775774_115775826_115778138_115778263_115781426_115781552_115781633_115781759_115783691
82068	chr7	+	4555	1	ISM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	78122	58	3413	-58	mono-exon	FALSE	NA	NA	NA	NA	NA	102	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTCCTGGAATTACCCCAC	NA	False	NA	NA	False	NA	NA	NA	58956671	58961226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_58956700_58961200
82069	chr2	-	1530	7	NIC	ENSMUSG00000026767.13	novel	1984	12	NA	NA	7	-1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	63.4387280942976	2	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACCCTTGCACTTTTACA	NA	False	NA	NA	False	NA	NA	NA	12424195	12352077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_12353015_12355739_12355812_12400989_12401070_12402303_12402378_12410670_12410732_12414811_12414892_12423969
82070	chr5	-	2694	12	NNC	ENSMUSG00000029228.16	novel	2564	11	NA	NA	-1323	66	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	6.31016495966483	44	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCATGAAGATTTACATG	NA	False	NA	NA	False	NA	NA	NA	74864896	74757698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_74758072_74758436_74758596_74766697_74766924_74768397_74768567_74771337_74771473_74780634_74781007_74784142_74784346_74788008_74788162_74788780_74789023_74846056_74846534_74863452_74863571_74864829
82071	chr14	+	2114	8	NIC	ENSMUSG00000021916.17	novel	1692	8	NA	NA	-1727	0	intron_retention	FALSE	canonical	3	12	junction_1	42.4292929231584	51	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGCTTCCCCATTTT	6858	False	NA	NA	False	NA	NA	NA	30726688	30733948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30726748_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732988_30733077_30733191_30733441
82072	chr9	+	3125	11	NNC	ENSMUSG00000046603.17	novel	3049	11	NA	NA	10	-5	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7.24499827467198	70	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACCACACAGCTGCGTT	NA	False	NA	NA	False	NA	NA	NA	122634613	122665387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_122634852_122637831_122637902_122640822_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
82073	chrX	-	3154	7	NNC	ENSMUSG00000044348.15	novel	1737	7	NA	NA	18	-276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	15.8394724940223	74	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTTCATCAAGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	135938739	135902079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930857_135933099_135933250_135938678
82074	chr14	-	4584	21	NIC	ENSMUSG00000021870.18	novel	4501	23	NA	NA	-189	-4	combination_of_known_junctions	FALSE	canonical	3	90	junction_11	33.3543100663168	164	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTTTGCATGTTTGAGT	NA	False	NA	NA	False	NA	NA	NA	26255084	26134333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482
82075	chr11	+	4700	26	NNC	ENSMUSG00000020926.17	novel	5102	26	NA	NA	178	-419	intron_retention	TRUE	canonical	0	0	junction_4	7.07830488182022	32	39	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTGCATTGTTGCTGGG	NA	False	NA	NA	False	NA	NA	NA	102652442	102670669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_102652511_102652973_102653159_102660719_102660797_102660946_102661014_102662043_102662147_102662260_102662337_102662562_102662808_102662870_102662939_102663280_102663356_102663437_102663510_102663660_102663828_102664219_102664305_102664402_102664494_102664600_102664653_102665091_102665192_102665267_102665340_102665457_102665551_102665856_102665938_102666475_102666527_102666618_102666683_102666891_102666992_102667141_102667262_102667354_102667524_102667614_102667730_102667813_102667905_102668456
82076	chr14	+	2491	16	NNC	ENSMUSG00000025544.14	novel	3107	17	NA	NA	7	-274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	354.840784327594	2	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATTGTATCACTCCC	NA	False	NA	NA	False	NA	NA	NA	122344556	122396742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_122344848_122361127_122361196_122363517_122363616_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384118_122387363_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
82077	chr2	+	3990	23	ISM	ENSMUSG00000027652.16	ENSMUST00000109486.9	8383	30	27155	3056	449	-1449	3prime_fragment	FALSE	canonical	3	76	junction_2	20.0551409290972	31	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTCCATATTTAACAAG	NA	False	NA	NA	False	NA	NA	NA	158278922	158338117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_158279072_158279179_158279397_158282689_158282892_158285157_158285326_158285746_158285862_158286492_158286641_158288048_158288114_158290239_158290370_158292096_158292231_158296043_158296227_158298370_158298523_158303990_158304179_158305991_158306099_158307738_158307892_158308655_158308866_158315042_158315202_158318024_158318191_158319560_158319684_158324284_158324422_158334283_158334393_158334854_158334934_158336544_158336694_158337370
82078	chr10	-	3479	3	ISM	ENSMUSG00000034818.18	ENSMUST00000119060.8	4166	11	8523	3	6203	-3	3prime_fragment	FALSE	canonical	2	3	junction_2	0.5	61	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATTATCTGTCACCTTGT	3090	False	NA	NA	False	NA	NA	NA	81300438	81295064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_81298176_81298502_81298606_81300173
82079	chr6	-	1370	6	NNC	ENSMUSG00000042770.9	novel	1058	4	NA	NA	24	-6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	137.627904147378	44	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGTGGAGACAGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	135145166	135114525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_135115062_135129818_135130000_135132148_135132288_135140986_135141215_135141736_135141874_135145017
82080	chr2	+	1843	7	FSM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	10	770	1	-770	multi-exon	FALSE	canonical	3	141	junction_1	20.1941960858945	833	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTGAAGTTGTCCATGTA	NA	False	NA	NA	False	NA	NA	NA	36026410	36079889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_36026712_36031457_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
82081	chr16	-	2592	5	NNC	ENSMUSG00000038965.18	novel	2906	5	NA	NA	-9	-67	intron_retention	FALSE	canonical	0	0	junction_1	883.865374364218	5006	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGAATAGGCTTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	17019346	16969945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16972147_16974606_16974667_16977853_16978041_16994275_16994372_17019298
82082	chr15	+	574	3	NNC	ENSMUSG00000022452.17	novel	705	3	NA	NA	-29	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	801.5	68	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGAGGTCGTCCCCATT	NA	False	NA	NA	False	NA	NA	NA	82230248	82233261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82230471_82232100_82232242_82233050
82083	chr2	+	5231	1	Antisense	novelGene_ENSMUSG00000003418.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAACCCAGCTTAATGTC	NA	False	NA	NA	False	NA	NA	NA	13655833	13661064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_13655800_13661100
82084	chr9	-	2135	4	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	33	-428	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.7052709221576	24	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTATTTTTCCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	114763022	114728836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114730439_114746118_114746190_114749589_114749768_114762738
82085	chr19	-	982	2	Genic_Genomic	ENSMUSG00000075268.3	novel	561	1	NA	NA	-14	593	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTCAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16244999	16243831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_16244530_16244715
82086	chr5	-	1066	4	NNC	ENSMUSG00000032959.13	novel	1240	4	NA	NA	-3	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1245.9221484507	1	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATTGCATTCAGACCTG	NA	False	NA	NA	False	NA	NA	NA	117425651	117420731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117421417_117423794_117423887_117424198_117424310_117425473
82087	chr5	+	836	2	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCACATAATCTGAGAGG	3017	False	NA	NA	False	NA	NA	NA	117420715	117423806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117421529_117423783
82088	chr5	-	661	1	ISM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	4308	3	4208	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	49	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGACCTGCGGGTATTTC	NA	False	NA	NA	False	NA	NA	NA	117421382	117420721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_117420700_117421400
82089	chr5	+	814	1	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGGAGGCAAGTACCAGC	3021	False	NA	NA	False	NA	NA	NA	117420719	117421533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117420700_117421500
82090	chr5	-	1086	5	NNC	ENSMUSG00000032959.13	novel	779	5	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1352.16576276727	2	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTATTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	117425622	117420715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117421249_117421337_117421531_117423785_117423887_117424199_117424310_117425473
82091	chr5	+	831	2	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGCCCACATAATCTGAG	3019	False	NA	NA	False	NA	NA	NA	117420717	117423803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117421529_117423783
82092	chr9	+	2253	1	FSM	ENSMUSG00000089571.3	ENSMUST00000158946.3	80	1	-323	-1850	-323	1850	mono-exon	FALSE	NA	NA	NA	NA	NA	8	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGAGCCTTCATGTA	NA	False	NA	NA	False	NA	NA	NA	20801729	20803982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20801700_20804000
82093	chr7	-	2346	6	NIC	ENSMUSG00000025722.17	novel	2549	7	NA	NA	99	-2	intron_retention	FALSE	canonical	3	13	junction_4	49.9935995903476	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTATTTTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	80550868	80540473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80550095_80550185_80550391
82094	chr14	+	1810	1	Intergenic	novelGene_579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAGAGCCTACATTATAAA	8925	False	NA	NA	False	NA	NA	NA	56917476	56919286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_56917500_56919300
82095	chr18	-	3833	16	ISM	ENSMUSG00000024622.9	ENSMUST00000235480.2	5131	20	11477	6	-2107	-5	3prime_fragment	FALSE	canonical	3	111	junction_13	17.2930300667318	95	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTATCTGGTTTTGATGA	NA	False	NA	NA	False	NA	NA	NA	61298592	61264369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_61265668_61266923_61267134_61268542_61268660_61269298_61269433_61270474_61270695_61273862_61274048_61274730_61274863_61279500_61279629_61280318_61280621_61283440_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290834_61295968_61296101_61298556
82096	chr3	+	2079	13	NIC	ENSMUSG00000027959.15	novel	1894	14	NA	NA	5	270	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	15.9815431739936	2	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGCCTCGTTCCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	116388635	116415521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_116388828_116397110_116397172_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031
82097	chr19	-	1162	9	NNC	ENSMUSG00000063698.10	novel	1218	13	NA	NA	7331	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	12.2039952474589	28	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAGTTGAATACTTGAAA	NA	False	NA	NA	False	NA	NA	NA	60842531	60827209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60839617_60839892_60840449_60840529_60842124_60842191_60842301_60842359_60842444
82098	chr2	-	1912	1	Genic_Genomic	ENSMUSG00000027239.15	novel	NA	NA	NA	NA	-33	7	mono-exon	FALSE	NA	NA	NA	NA	NA	28	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCTTTTTTAATATATAA	NA	False	NA	NA	False	NA	NA	NA	91762077	91760165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_91760200_91762100
82099	chr7	-	1891	5	FSM	ENSMUSG00000005447.13	ENSMUST00000148150.8	859	5	-39	-993	0	683	multi-exon	TRUE	canonical	3	385	junction_2	17.4570902500961	563	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCTTCTCACAGTGCAA	8564	False	NA	NA	False	NA	NA	NA	24997346	24993790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796
82100	chr19	-	1829	4	Antisense	novelGene_ENSMUSG00000024902.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTACGCTCTGGGCG	7836	False	NA	NA	False	NA	NA	NA	5016116	5012383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_5012542_5013351_5013445_5013530_5013694_5014701
82101	chr16	+	2388	5	FSM	ENSMUSG00000022773.20	ENSMUST00000035682.16	3322	5	534	400	1	-5	multi-exon	FALSE	canonical	0	0	junction_2	19.0705925445435	15	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTTTTTGGATTTTGCG	NA	False	NA	NA	False	NA	NA	NA	16888093	16904200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_16888228_16895638_16895919_16899461_16899506_16899931_16900041_16902379
82102	chr12	+	2831	5	NIC	ENSMUSG00000079014.5	novel	2200	6	NA	NA	35	-31	intron_retention	FALSE	canonical	3	17	junction_3	5.11737237261468	61	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCGATAAATAATTAACTGC	NA	False	NA	NA	False	NA	NA	NA	104229450	104235600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_104229474_104230560_104230695_104231352_104232978_104233914_104234066_104234702
82104	chr10	+	2462	7	NIC	ENSMUSG00000045193.14	novel	834	8	NA	NA	-8	-6	intron_retention	FALSE	canonical	3	60	junction_6	113.828330783197	302	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAACCCCCGACTCTGTG	6206	False	NA	NA	False	NA	NA	NA	80003688	80008614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80008347_80008470
82105	chr14	+	1149	6	NNC	ENSMUSG00000022194.16	novel	1030	7	NA	NA	834	744	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	986.098088427313	26	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGAAAAAATTGGCCCTT	NA	False	NA	NA	False	NA	NA	NA	55133123	55136370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473_55135759_55135883
82106	chr14	+	959	4	NNC	ENSMUSG00000022194.16	novel	1030	7	NA	NA	2169	745	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1055.25573519724	7	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAAAAAATTGGCCCTTT	NA	False	NA	NA	False	NA	NA	NA	55134458	55136371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55134497_55134577_55134730_55135473_55135765_55135893
82107	chr17	+	4759	3	ISM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	52	7	18	-7	intron_retention	FALSE	canonical	3	19	junction_2	5.5	23	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAATTTAAAAAAAATAGTG	NA	False	NA	NA	False	NA	NA	NA	44389787	44397443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_44389874_44391537_44392402_44393634
82108	chr3	-	1392	11	NNC	ENSMUSG00000068921.15	novel	1375	12	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	401.537096667294	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	88858508	88830941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88831221_88832600_88832719_88834317_88834378_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858248
82109	chr8	+	1721	7	NIC	ENSMUSG00000003037.17	novel	4550	8	NA	NA	-19	-2628	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	362.99835475599	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCACCTGCCCTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	72915183	72935120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72915327_72922270_72922332_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
82110	chr3	-	3188	18	ISM	ENSMUSG00000037016.12	ENSMUST00000091137.6	12348	24	106013	2785	-7074	-767	3prime_fragment	FALSE	canonical	3	10	junction_8	4.63848800087443	2	65	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAAGTGAGCCTTGTC	4507	False	NA	NA	False	NA	NA	NA	53458763	53424143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_53424463_53426973_53427121_53427324_53427513_53428427_53428555_53429454_53429590_53429672_53429801_53431083_53431189_53433179_53433373_53442585_53442918_53443144_53443277_53444643_53444948_53446584_53446744_53448391_53448523_53451695_53451879_53452778_53452944_53455030_53455229_53457004_53457215_53458731
82111	chr3	+	2597	14	NNC	ENSMUSG00000027936.19	novel	2747	14	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	69	junction_12	16.2899032147389	111	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGTGTGCTTGGCTAT	NA	False	NA	NA	False	NA	NA	NA	90161614	90171427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90161866_90164423_90164526_90164601_90164717_90165769_90165834_90166460_90166530_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
82112	chr2	-	9547	41	NNC	ENSMUSG00000037110.21	novel	11030	41	NA	NA	-28	-1423	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_30	8.89940306986935	48	83	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATATTGATTTGATTT	NA	False	NA	NA	False	NA	NA	NA	146353859	146083221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_146086956_146090088_146090129_146102285_146102408_146156842_146156971_146169297_146169457_146175335_146175492_146176411_146176536_146182298_146182371_146183897_146184670_146187305_146187490_146188628_146188767_146189035_146189105_146190367_146190479_146195090_146195200_146199007_146199067_146199876_146200006_146203310_146203440_146229147_146229304_146229526_146229626_146230410_146230605_146246782_146246960_146248261_146248353_146252092_146252191_146253965_146254080_146254653_146254789_146263512_146263678_146266536_146266775_146270524_146270637_146273737_146273887_146276699_146276839_146277758_146277927_146285699_146285932_146289195_146289396_146291129_146291269_146292371_146292488_146293602_146293781_146295328_146295373_146302633_146302692_146321296_146321350_146327040_146327152_146353713
82113	chr7	-	5216	3	ISM	ENSMUSG00000063317.8	ENSMUST00000046929.7	10198	16	53990	2830	13552	-2830	3prime_fragment	FALSE	canonical	3	48	junction_1	2.5	39	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTGGCAGTTTAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	121252486	121244073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_121248975_121250704_121250858_121252324
82115	chr2	+	2884	4	ISM	ENSMUSG00000026974.12	ENSMUST00000028350.9	3903	6	2876	621	2458	-621	3prime_fragment	FALSE	canonical	3	887	junction_3	12.0277457017791	215	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGGATTGGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	24842679	24851466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_24842705_24843247_24843389_24848047_24848229_24848929
82116	chr2	-	2395	2	NNC	ENSMUSG00000062997.7	novel	296	2	NA	NA	33	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	0	32	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTTTCTGCTTCATGTT	NA	False	NA	NA	False	NA	NA	NA	38895101	38891597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_38892476_38893584
82117	chr10	-	2469	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	79	23	79	-23	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	189	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGTCAGTCCGGCATCT	NA	False	NA	NA	False	NA	NA	NA	81003678	80989122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
82118	chr11	+	3426	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	58	2	-27	-2	multi-exon	FALSE	canonical	3	173	junction_11	15.0937896237857	1	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATGTGCAGCTGAGTCAC	NA	False	NA	NA	False	NA	NA	NA	114566314	114611801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
82119	chr12	-	1031	9	NNC	ENSMUSG00000050545.11	novel	2851	7	NA	NA	77	-63	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10.6117564521619	7	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGAAATGATCATTTACA	NA	False	NA	NA	False	NA	NA	NA	4819155	4795672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4795757_4797154_4797224_4798083_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818504_4818915
82120	chr2	+	2892	11	NNC	ENSMUSG00000026749.12	novel	10338	10	NA	NA	-70	-360	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	115.413560728365	12	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCGTCCAAGTAACACCAG	NA	False	NA	NA	False	NA	NA	NA	38401755	38477132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_38401806_38413962_38414104_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
82121	chr14	-	838	6	Antisense	novelGene_ENSMUSG00000022194.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCCGGGGGCTCCCG	NA	False	NA	NA	False	NA	NA	NA	55135032	55131888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55131900_55132310_55132419_55133084_55133154_55133273_55133380_55134407_55134495_55134575
82122	chr14	-	1825	2	Antisense	novelGene_ENSMUSG00000022194.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	190	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCTAAGGCCAGGGACGT	NA	False	NA	NA	False	NA	NA	NA	55136374	55134468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55134495_55134575
82123	chr1	+	1875	15	ISM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	42567	3	-1618	3	3prime_fragment	FALSE	canonical	3	550	junction_6	64.3303416526203	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCACTGTTTTCTTCATT	NA	False	NA	NA	False	NA	NA	NA	150311567	150325683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
82124	chr7	-	1949	10	FSM	ENSMUSG00000001247.17	ENSMUST00000205961.2	2021	10	76	-4	76	0	multi-exon	TRUE	canonical	3	74	junction_7	47.1029867208513	281	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAAGCCTCTTGTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	30672671	30657199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
82125	chrX	+	2692	16	NIC	ENSMUSG00000034480.19	novel	4480	23	NA	NA	54085	-22	combination_of_known_junctions	FALSE	canonical	1	3	junction_15	33.6350346447801	6	43	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAAATGTTTACTC	NA	False	NA	NA	False	NA	NA	NA	128704809	128943257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_128704939_128721987_128722093_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128942396
82126	chrX	-	4606	3	FSM	ENSMUSG00000044149.8	ENSMUST00000057093.8	3264	3	11	-1353	11	1349	multi-exon	FALSE	canonical	3	10	junction_2	0.5	68	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTGTAAAACCTGACA	NA	False	NA	NA	False	NA	NA	NA	36166541	36149843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36154166_36155277_36155409_36166388
82127	chr4	+	2935	14	Antisense	novelGene_ENSMUSG00000028453.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	124	16	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAACCAACGGCAGTCCAG	NA	False	NA	NA	False	NA	NA	NA	43002343	43010510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43003091_43003221_43003344_43003781_43003932_43004557_43004603_43004740_43005039_43005210_43005277_43006460_43006613_43006748_43006896_43006982_43007113_43007265_43007402_43008706_43008916_43009149_43009279_43009705_43009801_43010001
82128	chr6	+	3759	6	ISM	ENSMUSG00000079511.9	ENSMUST00000101253.6	3628	12	5450	-1636	5450	1636	3prime_fragment	FALSE	canonical	3	4	junction_3	370.618617988897	1110	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGTCTCACTGAACC	5410	False	NA	NA	False	NA	NA	NA	83084047	83088556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_83084149_83084435_83084614_83084735_83084936_83085071_83086185_83086294_83086408_83086502
82129	chr2	-	2006	9	ISM	ENSMUSG00000026927.18	ENSMUST00000114102.10	2193	10	270	0	119	0	3prime_fragment	FALSE	canonical	3	96	junction_8	85.196739227508	150	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	26279058	26272813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26278503_26278573_26278927
82130	chr14	+	1220	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-182	-702	-182	702	mono-exon	FALSE	NA	NA	NA	NA	NA	2	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATATTTTACAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	13669255	13670475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
82131	chr2	+	4414	1	ISM	ENSMUSG00000027312.15	ENSMUST00000028781.9	8745	29	119421	4	29739	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	23	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCGTGCGTTTCGTTCTG	NA	False	NA	NA	False	NA	NA	NA	130867835	130872249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_130867800_130872200
82132	chr9	-	3234	8	FSM	ENSMUSG00000035914.12	ENSMUST00000165365.3	3603	8	355	14	355	-12	multi-exon	FALSE	canonical	3	53	junction_5	14.4716471567189	51	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTTTCAATAGCCTCT	457	False	NA	NA	False	NA	NA	NA	58462365	58431594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_58433645_58434801_58434838_58435734_58435777_58437878_58438014_58442738_58443036_58444551_58444891_58447949_58448224_58462304
82133	chr10	-	3845	10	FSM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	24	-521	24	521	multi-exon	TRUE	canonical	3	18	junction_9	5.66557723732532	64	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCCCAATCCTCCTCTG	3936	False	NA	NA	False	NA	NA	NA	81262983	81234450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
82134	chr3	+	4585	20	Fusion	ENSMUSG00000104776.2_ENSMUSG00000004127.13	novel	4064	8	NA	NA	-14058	-4657	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	50	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGAGGGCCTGGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	137795618	137849466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_137796993_137798341_137798510_137800718_137800844_137808846_137809074_137810425_137810546_137810699_137810802_137812862_137813074_137814718_137814929_137817403_137817515_137818220_137818392_137819818_137819975_137820896_137821050_137821763_137821901_137822165_137822282_137824070_137824183_137829495_137829638_137830818_137831002_137839758_137839897_137844662_137844757_137848931
82135	chr1	-	4983	4	Antisense	novelGene_ENSMUSG00000051285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	37	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATATCTAAAAGCATTG	NA	False	NA	NA	False	NA	NA	NA	7240611	7227242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_7227450_7227507_7231286_7233469_7233595_7239738
82136	chr6	+	1303	7	NNC	ENSMUSG00000047115.16	novel	2730	7	NA	NA	-24	-7	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	13.9483173019385	4	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGTTTTAAACAAATACATA	NA	False	NA	NA	False	NA	NA	NA	49344732	49366200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355443_49359896_49360014_49362306_49362390_49365750
82137	chr7	+	1546	8	NNC	ENSMUSG00000033685.14	novel	3988	8	NA	NA	2	323	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	197.148757675673	3	67	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTCTTTCTCATATG	NA	False	NA	NA	False	NA	NA	NA	100142572	100148832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_100142673_100143420_100143583_100145952_100146156_100146301_100146513_100147284_100147480_100147554_100147657_100147940_100148124_100148442
82138	chr6	-	2123	13	FSM	ENSMUSG00000056305.5	ENSMUST00000070345.5	2244	13	26	95	26	-95	multi-exon	FALSE	canonical	3	571	junction_6	46.7748745470139	241	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACCAGGCTGTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	72322141	72295755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321867
82139	chr16	-	6269	9	FSM	ENSMUSG00000047141.6	ENSMUST00000207826.2	6261	9	-15	7	-15	-3	multi-exon	FALSE	canonical	3	157	junction_4	10.7812047100498	79	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATAATGCAAGTGTTCAG	NA	False	NA	NA	False	NA	NA	NA	64672030	64600716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_64603640_64604869_64607166_64608667_64608810_64611449_64611590_64612131_64612335_64614783_64614920_64634987_64635070_64650826_64650973_64671829
82140	chr3	-	5638	20	NNC	ENSMUSG00000028184.13	novel	5509	20	NA	NA	-423	-15	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_19	6.88488649506014	29	21	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTTTTTCAAGTAGTAA	NA	False	NA	NA	False	NA	NA	NA	148695541	148521506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_148523565_148528590_148528688_148529331_148529461_148532000_148532170_148534112_148534205_148539497_148539565_148540939_148541161_148541987_148542198_148543199_148543374_148544744_148544951_148545280_148545407_148552484_148552669_148556471_148556658_148557530_148557635_148558202_148558497_148564368_148565170_148571235_148571346_148596047_148596262_148660198_148660372_148695518
82141	chr4	+	1896	11	ISM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	0	-59	0	59	intron_retention	FALSE	canonical	3	51	junction_4	7.11407056473296	280	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAAGAATCCTGAAGTAA	NA	False	NA	NA	False	NA	NA	NA	154226828	154241332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557
82142	chr4	-	5876	22	ISM	ENSMUSG00000020220.17	ENSMUST00000036579.14	15849	70	-9	172191	-9	31547	5prime_fragment	FALSE	canonical	1	4	junction_11	2.3828563815613	19	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCACACATGGAGATGAT	NA	False	NA	NA	False	NA	NA	NA	144921584	144871382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_144871452_144874886_144875919_144879216_144879369_144881138_144883353_144887154_144887288_144888567_144888699_144889745_144889917_144890325_144890402_144891125_144891257_144893960_144894141_144894685_144894888_144895045_144895148_144896805_144896975_144898214_144898316_144898647_144898819_144899623_144899729_144901378_144901496_144904581_144904666_144904758_144904950_144907685_144907764_144917065_144917237_144921488
82143	chrM	+	463	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	526	155	526	-155	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCTACTTATCTTAACCT	-2	True	NA	-30	True	NA	NA	NA	14670	15133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14700_15100
82144	chr1	-	3229	6	Fusion	ENSMUSG00002076477.1_ENSMUSG00000026200.14	novel	2031	14	NA	NA	30	-242	intron_retention	FALSE	canonical	3	13	junction_2	2.87054001888146	6	53	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCCTCCCAGCCCCAAGA	5289	False	NA	NA	False	NA	NA	NA	75187367	75178091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_75179111_75179218_75179394_75179490_75179586_75184962_75185024_75185330_75185867_75186024
82145	chr10	-	4720	2	Antisense	novelGene_ENSMUSG00000038481.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAACTGGGAAGAGGATGAA	NA	False	NA	NA	False	NA	NA	NA	40335607	40330687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_40331184_40331383
82146	chr7	-	2847	22	NNC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	21	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	323.218473181679	3	99	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAACCTGCCTATGGGTTT	6949	False	NA	NA	False	NA	NA	NA	126101565	126090884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126091105_126092401_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096837_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
82148	chr8	-	4732	1	NIC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	57	-13062	mono-exon	FALSE	NA	NA	NA	NA	NA	16	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTTTTTTTCTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	26337665	26332933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26332900_26337700
82149	chr16	+	3130	5	ISM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	2160	3206	2139	-3124	internal_fragment	FALSE	canonical	3	939	junction_2	37.6497011940334	2	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACCCCTTTATTGGAGAA	NA	False	NA	NA	False	NA	NA	NA	22678754	22687932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870
82150	chr6	-	1163	1	Intergenic	novelGene_4112	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTCATGTTGACAGGAA	NA	False	NA	NA	False	NA	NA	NA	3126723	3125560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_3125600_3126700
82151	chr2	+	1492	6	Antisense	novelGene_ENSMUSG00000075415.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAGATGACCTCGTGCT	NA	False	NA	NA	False	NA	NA	NA	30943252	30986107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_30944230_30945438_30945587_30948900_30949029_30972984_30973092_30974035_30974100_30986039
82152	chr17	+	2104	1	ISM	ENSMUSG00000064043.16	ENSMUST00000190080.9	7044	19	218792	120	65665	-120	mono-exon	FALSE	NA	NA	NA	NA	NA	24	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTTATTTTCCAGGGGTT	1884	False	NA	NA	False	NA	NA	NA	47670659	47672763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_47670700_47672800
82153	chr12	+	2765	24	NIC	ENSMUSG00000021000.18	novel	2291	23	NA	NA	41	0	combination_of_known_junctions	FALSE	canonical	1	13	junction_1	100.583289415493	272	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTGTTTGGTATTAATAA	NA	False	NA	NA	False	NA	NA	NA	59177848	59236962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_59177906_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
82154	chr17	+	2365	12	NNC	ENSMUSG00000024429.10	novel	2848	12	NA	NA	-227	-59	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	181.024038401917	1	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATTAATGAAACGTGTG	NA	False	NA	NA	False	NA	NA	NA	36291052	36300295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36291140_36291508_36291675_36291953_36292065_36292286_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
82155	chr13	+	4359	7	NNC	ENSMUSG00000021420.14	novel	2125	7	NA	NA	1	-647	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	109.054649908505	6	86	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACCCCTGGCCTTGGCAT	NA	False	NA	NA	False	NA	NA	NA	36301863	36597077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36490896_36491029_36525919_36526081_36594061
82156	chr8	-	2409	13	Antisense	novelGene_ENSMUSG00000004565.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGGGAAACGTAGTTTCAC	2892	False	NA	NA	False	NA	NA	NA	3581350	3566862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3567074_3567321_3567406_3567555_3567661_3571272_3571415_3571506_3572181_3572275_3572403_3572584_3572667_3572756_3572922_3573254_3573340_3573755_3573863_3574006_3574165_3574249_3574328_3580959
82157	chr5	-	6197	1	Intergenic	novelGene_697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTCACGTTCATCCTTA	NA	False	NA	NA	False	NA	NA	NA	33658322	33652125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_33652100_33658300
82158	chr4	+	2173	5	NNC	ENSMUSG00000028779.17	novel	1551	5	NA	NA	-1138	-15	intron_retention	FALSE	canonical	2	4	junction_1	99.022724664594	49	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGTTTTCCACCATGAC	8140	False	NA	NA	False	NA	NA	NA	130000210	130021912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130000320_130001255_130001444_130014960_130015235_130018855_130019591_130021045
82159	chr1	+	1202	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-12	at_least_one_novel_splicesite	FALSE	canonical	1	204	junction_3	9352.54701605397	2	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454443	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457269_86457452_86457527_86457686
82160	chr1	+	1433	1	Intergenic	novelGene_384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTCTACATAGTAAGACAG	NA	False	NA	NA	False	NA	NA	NA	72248428	72249861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_72248400_72249900
82161	chr5	-	1923	10	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	8	-259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	194.026026000205	1	81	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34093586	34055518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056123_34056621_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
82162	chr17	-	5545	28	NNC	ENSMUSG00000013236.18	novel	5608	29	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	83.8777770418451	141	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACCTAGTGCATGGAGTGC	NA	False	NA	NA	False	NA	NA	NA	56769160	56719433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56720394_56720728_56720865_56720950_56721106_56721682_56721809_56721884_56722012_56723880_56724060_56724225_56724512_56724590_56724746_56725710_56725831_56725909_56726086_56726403_56726528_56726622_56726721_56728239_56728361_56729128_56729287_56730182_56730399_56730493_56730588_56731024_56731279_56731879_56731978_56741452_56741598_56741880_56742015_56742609_56743192_56744785_56745056_56754359_56754471_56758651_56758841_56761186_56761329_56761873_56762020_56765191_56765378_56769103
82164	chr4	-	3614	12	NNC	ENSMUSG00000028826.15	novel	3826	11	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	59.5963002900722	104	14	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTCCTGCCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	134580508	134530069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134531876_134533827_134534003_134536910_134537032_134538446_134538630_134539850_134540010_134555317_134555820_134557859_134558039_134560508_134560633_134563633_134563761_134565159_134565302_134580348_134580403_134580466
82165	chr9	+	4462	17	FSM	ENSMUSG00000111521.2_ENSMUSG00000035382.10	ENSMUST00000216672.2	3599	17	225	-1088	225	1021	multi-exon	FALSE	canonical	0	0	junction_1	11.2261900816795	43	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGCTCTGCTACACCTG	NA	False	NA	NA	False	NA	NA	NA	45818507	45842045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_45818602_45819825_45819950_45820557_45821035_45821672_45821808_45822381_45822548_45824248_45824340_45825627_45825683_45826385_45826525_45827285_45827387_45830059_45830228_45830543_45830652_45831089_45831193_45837208_45837366_45838031_45838127_45838872_45838967_45839184_45839303_45839808
82166	chr4	+	1531	5	Intergenic	novelGene_2060	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCGGTTGTCCTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	146316450	146331788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146316491_146317966_146318083_146327964_146328160_146328570_146328729_146330766
82167	chr10	-	609	3	ISM	ENSMUSG00000090841.3	ENSMUST00000218170.2	824	4	-30	337	1	5	5prime_fragment	FALSE	canonical	3	2189	junction_1	322	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGACCTTTCTGGAGC	8276	False	NA	NA	False	NA	NA	NA	128329692	128328091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_128328272_128328470_128328615_128329407
82168	chr13	+	1161	1	Genic_Genomic	ENSMUSG00000021555.16	novel	NA	NA	NA	NA	2279	242	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGCTGCTTCCTATTT	NA	False	NA	NA	False	NA	NA	NA	59782817	59783978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_59782800_59784000
82169	chr1	+	1207	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8722.60083060093	1	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	86454443	86458417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457531_86457686
82170	chr1	+	2811	5	ISM	ENSMUSG00000026499.6	ENSMUST00000027780.6	3471	8	10647	43	6833	-43	3prime_fragment	FALSE	canonical	3	166	junction_3	17.2481883106603	106	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAAGTCGTCGATGTTTC	NA	False	NA	NA	False	NA	NA	NA	180564254	180581726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_180564416_180566027_180566203_180572635_180572823_180574358_180574644_180579723
82171	chr5	-	1810	10	NNC	ENSMUSG00000029422.16	novel	1595	10	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	243.661321317465	1	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAAAACTGGTGTTAATT	4332	False	NA	NA	False	NA	NA	NA	123887466	123866790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123867290_123867327_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874617_123874739_123877554_123877759_123878734_123878926_123882989_123883175_123887351
82172	chr2	+	1499	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	-6	-106	-6	106	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	1410	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAAGCTGACTGCGAAG	NA	False	NA	NA	False	NA	NA	NA	30697831	30713151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
82173	chr11	-	3938	9	ISM	ENSMUSG00000018334.19	ENSMUST00000018478.11	5495	19	117321	9	-8676	-8	3prime_fragment	FALSE	canonical	3	12	junction_1	8.77496438739212	29	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGGTATCTGGAGACTC	NA	False	NA	NA	False	NA	NA	NA	78919912	78904274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_78907090_78910387_78910522_78911180_78911317_78911507_78911640_78912212_78912347_78916068_78916166_78918242_78918626_78919300_78919350_78919854
82174	chr9	+	1757	8	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	293	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	67.0010660895993	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	108174413	108179501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178355_108178527
82175	chr5	+	4122	17	NIC	ENSMUSG00000036435.14	novel	3272	18	NA	NA	3	-2	intron_retention	FALSE	canonical	3	47	junction_10	36.8485074324592	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATATTTGATAATATTCT	NA	False	NA	NA	False	NA	NA	NA	76677160	76718130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76716009_76717464
82176	chr18	+	3681	11	Antisense	novelGene_ENSMUSG00000024566.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGACAAGGGAACAGGTAT	NA	False	NA	NA	False	NA	NA	NA	80776850	80805449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_80779365_80781867_80782071_80782960_80783019_80793032_80793140_80795969_80796037_80796205_80796362_80797162_80797228_80797458_80797602_80799662_80799754_80801504_80801609_80805276
82177	chr7	+	3007	3	FSM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	-72	-1669	-37	-1071	multi-exon	FALSE	canonical	3	2284	junction_2	148	10536	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATTGCTCAGCCTTCTGT	539	False	NA	NA	False	NA	NA	NA	126294535	126297899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126295272_126295354_126295453_126295726
82178	chr17	-	4512	17	FSM	ENSMUSG00000023923.11	ENSMUST00000225252.2	4150	17	36	-398	-5	398	multi-exon	FALSE	canonical	2	18	junction_7	4.02919036532155	54	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTACCATTTATCAATTTA	NA	False	NA	NA	False	NA	NA	NA	51486344	51104356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_51107224_51120783_51120870_51159560_51159668_51181593_51181737_51224554_51224728_51226019_51226090_51226189_51226241_51227542_51227632_51242483_51242587_51270720_51270789_51273579_51273655_51273743_51273834_51275217_51275327_51291632_51291703_51332101_51332233_51450386_51450450_51486127
82179	chr17	+	5786	7	ISM	ENSMUSG00000015597.18	ENSMUST00000113481.9	13060	10	15507	5281	-818	3422	3prime_fragment	FALSE	canonical	3	36	junction_1	8.77496438739212	65	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTGGCTTGGACAAGTT	NA	False	NA	NA	False	NA	NA	NA	46710163	46725669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_46711018_46713659_46713760_46716708_46717011_46719944_46720146_46720605_46720706_46721198_46721318_46721559
82180	chr15	-	1246	9	NNC	ENSMUSG00000022422.14	novel	1324	9	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	86.3639645627735	4	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTATCCCTGACTTCT	NA	False	NA	NA	False	NA	NA	NA	54953869	54939496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950206_54950240_54950997_54951133_54952350_54952520_54953621
82181	chr9	+	3425	25	FSM	ENSMUSG00000036466.18	ENSMUST00000068967.11	6680	25	-20	3275	-17	-3	multi-exon	FALSE	canonical	2	5	junction_22	6.84348838921594	26	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAGGTGTCTCACATAA	NA	False	NA	NA	False	NA	NA	NA	64292947	64613212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64293111_64408804_64408906_64413309_64413412_64415989_64416091_64451875_64451969_64545516_64545764_64547295_64547417_64555096_64555234_64560351_64560565_64567621_64567797_64586460_64586582_64587515_64587680_64588671_64588775_64593161_64593309_64593644_64593780_64597283_64597413_64598502_64598632_64599076_64599206_64599636_64599766_64601042_64601280_64602645_64602765_64604588_64604656_64605088_64605191_64607378_64607436_64613008
82182	chr17	+	2142	5	ISM	ENSMUSG00000061130.14	ENSMUST00000080217.14	2670	6	35899	-86	218	86	3prime_fragment	FALSE	canonical	3	718	junction_4	374.08855903382	187	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATGTAGTTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	85301325	85322205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85320993
82183	chr17	+	3831	15	NNC	ENSMUSG00000024219.17	novel	4517	14	NA	NA	1	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.8708113548496	59	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGGCCATAGCTCTGGGGT	4251	False	NA	NA	False	NA	NA	NA	28128291	28281743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28128433_28227315_28227407_28257053_28257121_28261543_28261651_28269539_28269639_28270470_28270624_28270698_28270807_28271612_28271778_28272863_28272990_28273265_28273338_28273643_28273731_28276300_28276439_28277263_28277435_28278267_28278366_28279535
82184	chr10	-	1219	4	NIC	ENSMUSG00000050157.7	novel	1221	7	NA	NA	19	-648	intron_retention	FALSE	canonical	3	20	junction_2	7.58653778449403	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCGAGGCCAGCCTGGT	4935	False	NA	NA	False	NA	NA	NA	75776487	75774657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_75775673_75775764_75775852_75776227_75776255_75776397
82185	chrX	+	2938	4	Genic_Genomic	ENSMUSG00000082629.4	novel	2403	1	NA	NA	-2804	7758	multi-exon	TRUE	non_canonical	0	0	junction_3	1.24721912892465	7	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCCTGCTTGACAGTGTA	NA	False	NA	NA	False	NA	NA	NA	72338394	72351359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_72338735_72339077_72339243_72341198_72343600_72351327
82186	chr10	+	881	3	ISM	ENSMUSG00000003068.18	ENSMUST00000144883.8	3663	11	13438	0	2559	0	3prime_fragment	FALSE	canonical	3	4	junction_1	40.5	7	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGCTATGAGGGTGT	4885	False	NA	NA	False	NA	NA	NA	79965074	79966303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79965535_79965738_79965946_79966089
82187	chr14	+	1998	13	FSM	ENSMUSG00000004561.15	ENSMUST00000168413.8	1844	13	-146	-8	-112	0	multi-exon	FALSE	canonical	3	21	junction_7	44.5586380202787	460	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	52122186	52129325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126855_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
82188	chr7	+	2965	12	Antisense	novelGene_ENSMUSG00000038371.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	18	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTCTGACAGTGAGAGTA	NA	False	NA	NA	False	NA	NA	NA	109907220	109948079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_109908704_109909364_109909497_109911280_109911369_109911882_109912077_109913166_109913271_109914178_109914416_109916104_109916233_109919880_109920005_109928965_109929097_109934534_109934676_109939096_109939281_109948060
82189	chr14	-	3562	13	NNC	ENSMUSG00000021816.12	novel	3298	14	NA	NA	-7781	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	79.3035658438859	103	52	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAACCAATCCATTAGCT	NA	False	NA	NA	False	NA	NA	NA	20581892	20549445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20551731_20553314_20553353_20558691_20558790_20559483_20559566_20565590_20565669_20570621_20570748_20573647_20573737_20573846_20573925_20574027_20574168_20574424_20574571_20578225_20578338_20581011_20581137_20581727
82190	chr15	-	3129	17	NIC	ENSMUSG00000015377.11	novel	2677	18	NA	NA	7	297	intron_retention	FALSE	canonical	3	17	junction_16	28.8909587933665	43	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGGTACTTTGCCTAG	NA	False	NA	NA	False	NA	NA	NA	89080661	89068717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_89069313_89069394_89069470_89069564_89070251_89070374_89070465_89070565_89070631_89070956_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89077137_89077322_89080421
82191	chr11	+	2644	2	NNC	ENSMUSG00000086015.2	novel	1269	2	NA	NA	-1233	-353	intron_retention	FALSE	non_canonical	0	0	junction_1	0	18	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTACAATTTTT	60	False	NA	NA	False	NA	NA	NA	95748457	95751517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95749228_95749643
82192	chr6	-	3601	8	FSM	ENSMUSG00000042042.15	ENSMUST00000049344.15	3661	8	57	3	57	-3	multi-exon	FALSE	canonical	3	37	junction_1	9.61291648072041	38	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGAAAATGTGGTAAGTT	NA	False	NA	NA	False	NA	NA	NA	118116044	118084415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_118086356_118091326_118091409_118096570_118096666_118097905_118098085_118101272_118101375_118103082_118103300_118105655_118106581_118115983
82193	chr5	+	541	3	NNC	ENSMUSG00000029614.14	novel	486	4	NA	NA	68	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8379	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121345207	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121345259_121346334_121346639_121346844
82194	chr10	-	6529	28	NNC	ENSMUSG00000090761.2	novel	390	2	NA	NA	1588	14659	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	46	40	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCAGCGGCGGCGGCGG	NA	False	NA	NA	False	NA	NA	NA	128229844	128213051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128213116_128213434_128213519_128213953_128214034_128214219_128214291_128215247_128215449_128216447_128216534_128216792_128216938_128217712_128217926_128218201_128218282_128218499_128218609_128218759_128218848_128218922_128219046_128219222_128219294_128219440_128219577_128219658_128219742_128221969_128222079_128222274_128222350_128222827_128223027_128223235_128223327_128223455_128223573_128224406_128224625_128224766_128224858_128224955_128225039_128225115_128225262_128225348_128225436_128225639_128225722_128225901_128225992_128226337
82195	chr1	-	1726	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	13	808	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	883.642284807602	6	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATCAAGCTTAGTCTCTC	2323	False	NA	NA	False	NA	NA	NA	93729643	93719489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722574_93726101_93726193_93728523_93728633_93729419
82196	chr11	+	2447	14	Antisense	novelGene_ENSMUSG00000000320.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGATCTGTGTCCCCGCC	2457	False	NA	NA	False	NA	NA	NA	70132858	70146197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_70133389_70133508_70133682_70133802_70133903_70136685_70136807_70137718_70137896_70138088_70138177_70140876_70141083_70142275_70142420_70143223_70143390_70143623_70143724_70143835_70143960_70144072_70144155_70145234_70145436_70145962
82197	chr7	+	1376	1	Antisense	novelGene_ENSMUSG00000040511.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTAGGTCGGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	19649704	19651080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_19649700_19651100
82198	chr1	+	1825	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113733.10	1488	8	-18	-319	-18	0	multi-exon	FALSE	canonical	3	89	junction_1	21.8136822818587	524	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCTGCCTTCTGA	1113	False	NA	NA	False	NA	NA	NA	74627429	74631602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
82199	chr1	-	3587	1	ISM	ENSMUSG00000026463.18	ENSMUST00000143567.8	11725	21	94729	3269	-4431	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	63	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCAATGCCATGCACT	NA	False	NA	NA	False	NA	NA	NA	133634050	133630463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_133630500_133634000
82200	chr7	+	4610	19	NIC	ENSMUSG00000030816.9	novel	5279	20	NA	NA	5	-51	combination_of_known_junctions	FALSE	canonical	3	322	junction_4	42.3425186885344	3	93	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGTGTTGTGTATGGGCT	NA	False	NA	NA	False	NA	NA	NA	127187943	127202706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
82201	chr2	-	2479	9	NNC	ENSMUSG00000026878.18	novel	3081	8	NA	NA	5	-402	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	349.099712653849	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGAAAATAGGATTCGGT	9705	False	NA	NA	False	NA	NA	NA	35090979	35070618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_35071421_35071467_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
82203	chr3	+	4760	30	NIC	ENSMUSG00000041977.19	novel	6776	40	NA	NA	80002	-10	combination_of_known_junctions	FALSE	canonical	3	49	junction_9	17.3515788601999	35	26	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAATATTCTTCCATTGT	NA	False	NA	NA	False	NA	NA	NA	87606069	87645330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_87606210_87609464_87609540_87609761_87609864_87616870_87616970_87618806_87618850_87620317_87620415_87620527_87620651_87623291_87623316_87624336_87624482_87624727_87624828_87629663_87629791_87632785_87632966_87633043_87633092_87633270_87633459_87633678_87633826_87634441_87634522_87634676_87634803_87635269_87635388_87635822_87636002_87636511_87636588_87636791_87636960_87637715_87637807_87638482_87638609_87639088_87639151_87639966_87640180_87640454_87640812_87641730_87641860_87642651_87642879_87643112_87643303_87644350
82204	chr4	+	1340	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	21	8	17	-8	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	1391	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCGAACAGTGTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	134658229	134664851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
82205	chr5	-	2219	11	NNC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-54	-3	intron_retention	FALSE	non_canonical	2	111	junction_3	24.5277393984851	461	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTGGGAAGCCAACCAT	NA	False	NA	-114	True	NA	NA	NA	24628582	24623241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24624461_24624597_24624679_24624780_24624841_24625255_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627557_24627645_24627714_24627795_24627885_24628446
82206	chr2	-	1890	4	FSM	ENSMUSG00000086453.8	ENSMUST00000141843.8	457	4	-10	-1423	-10	1413	multi-exon	FALSE	canonical	1	2	junction_3	0.942809041582063	65	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACACTATTGTAACTATT	2124	False	NA	NA	False	NA	NA	NA	164611554	164594748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164596225_164601148_164601261_164609632_164609871_164611490
82207	chr4	+	1486	9	NNC	ENSMUSG00000028410.14	novel	3376	9	NA	NA	-30	-569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1391.59489772527	1	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACATGTCGGTCTGTCTA	-8	True	NA	NA	False	NA	NA	NA	40722528	40733331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40722634_40723702_40723761_40724084_40724131_40726091_40726210_40727955_40728184_40730172_40730288_40731688_40731800_40732075_40732177_40732727
82208	chr12	-	1874	13	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-453	-4	intron_retention	FALSE	canonical	2	2	junction_10	65.738539347597	2	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAGAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	84659132	84649430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655643_84655748_84656248_84658494_84658546_84659098
82209	chr14	+	2416	1	NIC	ENSMUSG00000021767.20	novel	606	2	NA	NA	0	-33262	mono-exon	FALSE	NA	NA	NA	NA	NA	12	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCAACCCCATTCAAACC	NA	False	NA	NA	False	NA	NA	NA	21531501	21533917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531500_21533900
82210	chr2	+	1925	7	NNC	ENSMUSG00000027160.17	novel	2240	8	NA	NA	28	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	179.681199164891	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCATTTTTTTTAGAAGT	NA	False	NA	NA	False	NA	NA	NA	109848189	109875667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_109848354_109848476_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
82211	chr2	+	2040	8	FSM	ENSMUSG00000064289.16	ENSMUST00000112495.8	2039	8	-1	0	-1	0	multi-exon	FALSE	canonical	3	34	junction_2	9.53190132434987	150	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	NA	NA	NA	61423419	61484515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
82212	chr1	+	4486	17	ISM	ENSMUSG00000055013.17	ENSMUST00000027521.15	11921	18	149790	6650	24360	966	3prime_fragment	FALSE	canonical	3	334	junction_10	42.3662878212146	64	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTATTTTTGAAGAATG	NA	False	NA	NA	False	NA	NA	NA	89532317	89818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_89532379_89537217_89537306_89555482_89555569_89558109_89558252_89561881_89562017_89591382_89591511_89592755_89592912_89598900_89598994_89653682_89653788_89671449_89671619_89694027_89694187_89716884_89717047_89762155_89762311_89765433_89765525_89770742_89770966_89815227_89815484_89816412
82213	chr4	+	1289	2	NNC	ENSMUSG00000028426.11	novel	2176	2	NA	NA	18	-1033	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	32	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATCACAGTGTTGGCTTTT	9	True	NA	NA	False	NA	NA	NA	55350069	55391204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_55350273_55390118
82214	chr3	+	1682	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	83	16	36	-16	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	102	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTTCTAGAAAGCATATT	NA	False	NA	NA	False	NA	NA	NA	94217478	94239831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
82215	chr18	-	1475	10	NNC	ENSMUSG00000024539.18	novel	1568	10	NA	NA	-117	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	173.952171658451	4	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	67857782	67798581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857728
82216	chr7	+	3680	15	NNC	ENSMUSG00000052707.9	novel	5223	20	NA	NA	2634	567	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	50.9091327358694	1	187	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGCTCAACATTAATTG	NA	False	NA	NA	False	NA	NA	NA	122776071	122793777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_122776128_122776904_122776957_122778939_122779083_122779762_122779901_122780610_122780671_122781178_122781257_122781468_122781677_122783378_122783511_122785785_122785945_122786575_122786717_122788010_122788119_122789071_122789290_122790722_122790794_122791281_122791422_122791801
82217	chr9	+	1063	1	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	4784	13	1040	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	23	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGAAATTGCCTCTTAG	NA	False	NA	NA	False	NA	NA	NA	35127234	35128297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_35127200_35128300
82218	chr2	-	1064	3	ISM	ENSMUSG00000034032.16	ENSMUST00000136419.8	4546	24	22238	2	14940	1	3prime_fragment	FALSE	canonical	3	480	junction_1	6	5	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGATCTGGACTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	119595743	119594445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_119594926_119595024_119595085_119595219
82219	chr15	+	2141	14	NNC	ENSMUSG00000032783.10	novel	2255	14	NA	NA	9	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	23.8339919358389	2	22	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGGGGCAGCCAGTGCT	NA	False	NA	NA	False	NA	NA	NA	98972876	98981286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975229_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
82220	chr14	-	2002	1	ISM	ENSMUSG00000021733.12	ENSMUST00000224952.3	7297	26	77743	1412	10600	-1412	mono-exon	FALSE	NA	NA	NA	NA	NA	1	93	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACGGAGCTTAGTGCTA	NA	False	NA	NA	False	NA	NA	NA	7673236	7671234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_7671200_7673200
82221	chr13	+	2675	23	Fusion	ENSMUSG00000114388.2_ENSMUSG00000038651.16	novel	2641	29	NA	NA	-10880	-2	multi-exon	FALSE	canonical	0	0	junction_1	12.301649422431	72	38	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAGTTAGTGTGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	41291391	41332504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_41291427_41292142_41292189_41295183_41295277_41295380_41295442_41296923_41297070_41299501_41299596_41300030_41300150_41302269_41302328_41302410_41302490_41303953_41304003_41306165_41306311_41306906_41306957_41308994_41309122_41310909_41310994_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327290_41327389_41327673_41327774_41327873_41327933_41330358_41330421_41331657
82222	chr14	+	7263	1	NIC	ENSMUSG00000005148.9	novel	3352	4	NA	NA	4283	-4337	mono-exon	FALSE	NA	NA	NA	NA	NA	15	89	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGGAACGTTAATGGCTA	NA	False	NA	NA	False	NA	NA	NA	99540872	99548135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_99540900_99548100
82223	chr1	+	3497	7	NNC	ENSMUSG00000026005.16	novel	2724	7	NA	NA	37	2718	intron_retention	FALSE	non_canonical	1	4	junction_6	298.472034796487	33	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATTTAACTGCAAAAACA	NA	False	NA	NA	False	NA	NA	NA	66740026	66761682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912_66757064_66758939
82224	chr4	-	2240	14	NNC	ENSMUSG00000028677.20	novel	1675	14	NA	NA	2353	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	488.369755156356	2	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	117230301	117128660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142711_117143047_117143170_117146222_117146266_117153328_117153431_117156741_117156788_117164742_117164876_117230057
82225	chr3	+	1916	6	NNC	ENSMUSG00000027536.7	novel	6188	5	NA	NA	22	-4335	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	92.6485833674752	312	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACTCGTGCCATATCACA	NA	False	NA	NA	False	NA	NA	NA	10432039	10456062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_10432282_10450338_10450475_10450611_10450790_10452096_10452212_10454608_10454763_10454971
82226	chr1	-	3586	8	Genic_Genomic	ENSMUSG00000054770.17	novel	5016	10	NA	NA	-759	-32991	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTCTGAGGGGGGCGGGA	NA	False	NA	NA	False	NA	NA	NA	58058874	58035751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_58035879_58037249_58037381_58039122_58039297_58040374_58040453_58042050_58042137_58052663_58052901_58054516_58057142_58058746
82227	chr2	+	1773	7	ISM	ENSMUSG00000017868.17	ENSMUST00000018012.14	2693	14	10524	4	-258	-3	3prime_fragment	FALSE	canonical	0	0	junction_2	8.32165848854662	30	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTGTTACTGGGTATG	NA	False	NA	NA	False	NA	NA	NA	162839773	162856043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162839867_162840149_162840187_162841101_162841189_162845191_162845288_162846066_162846223_162848713_162848804_162854829
82228	chr16	-	1822	2	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	18646	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	NA	False	NA	NA	False	NA	NA	NA	22201933	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22201324_22201372
82229	chr2	-	591	3	Antisense	novelGene_ENSMUSG00000047459.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	151	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTCTGCCTGCCAGAAAG	NA	False	NA	NA	False	NA	NA	NA	155092196	155084659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_155084725_155089688_155089855_155091836
82230	chr9	+	1924	8	NIC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-299	-1833	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	112.548220958025	32	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAGAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	110782567	110811301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_110782957_110786867_110787015_110789869_110790078_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
82231	chr17	-	1641	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	-39	-3	-11	3	multi-exon	FALSE	canonical	3	708	junction_2	5	3033	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGTTAAATACAGGCCCA	NA	False	NA	NA	False	NA	NA	NA	37262644	37259244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_37260447_37260768_37260878_37262314
82232	chr11	+	5445	26	ISM	ENSMUSG00000047284.15	ENSMUST00000061837.11	5188	29	1793	5	292	-5	intron_retention	FALSE	canonical	3	43	junction_6	15.8641230454129	67	74	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCATCTGCCTCCGCCT	NA	False	NA	NA	False	NA	NA	NA	69794509	69804641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69794546_69794690_69794990_69795158_69795271_69795359_69795449_69796356_69796430_69796546_69796812_69797051_69797234_69797343_69797430_69797551_69797715_69797809_69798009_69798089_69798167_69798249_69798329_69798662_69798839_69798921_69799054_69799284_69799431_69799503_69799729_69799819_69799919_69800042_69800205_69800373_69800539_69801086_69801246_69801560_69801741_69801851_69801940_69802043_69802152_69802269_69802415_69802567_69802681_69802754
82233	chr12	-	4091	1	FSM	ENSMUSG00000034168.8	ENSMUST00000038422.8	4098	1	7	0	7	0	mono-exon	FALSE	NA	NA	NA	NA	NA	326	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGCCCTGAGTCAGCAAA	NA	False	NA	NA	False	NA	NA	NA	86931565	86927474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_86927500_86931600
82234	chr5	-	5188	6	Intergenic	novelGene_740	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGAGGAAGCACCGCCCGCC	NA	False	NA	NA	False	NA	NA	NA	88908360	88868760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_88868981_88891160_88891330_88892915_88893010_88897383_88897515_88901015_88901181_88903951
82235	chr7	-	4368	4	FSM	ENSMUSG00000008734.10	ENSMUST00000008878.10	4518	4	155	-5	155	5	multi-exon	FALSE	canonical	3	70	junction_1	4.64279609239471	46	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCGTGGTAGCTTGTCAG	NA	False	NA	NA	False	NA	NA	NA	118594279	118571264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_118574427_118575735_118575894_118582837_118583869_118594262
82236	chr6	+	5284	22	Antisense	novelGene_ENSMUSG00000030201.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	54	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATTAGAAACTTCAATAC	NA	False	NA	NA	False	NA	NA	NA	134426937	134518691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_134428044_134430512_134430611_134431659_134431796_134433016_134433249_134434620_134434732_134436191_134436432_134439498_134439624_134441356_134441566_134444469_134444654_134445598_134445817_134447650_134447855_134456471_134456798_134457337_134457522_134461174_134461404_134462606_134462895_134463414_134463637_134483159_134483327_134484244_134484644_134488116_134488251_134490185_134490382_134497357_134497555_134518612
82237	chr4	-	3640	1	Genic_Genomic	ENSMUSG00000028518.9	novel	NA	NA	NA	NA	76592	215	mono-exon	FALSE	NA	NA	NA	NA	NA	48	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGCAGATACTAGGTTG	NA	False	NA	NA	False	NA	NA	NA	104890495	104886855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_104886900_104890500
82238	chr15	-	3852	12	ISM	ENSMUSG00000035891.17	ENSMUST00000044332.16	4518	13	20210	27	-6463	-27	3prime_fragment	TRUE	canonical	3	13	junction_10	4.47398356340519	42	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATAATAAAGTTACTTTG	8451	False	NA	NA	False	NA	NA	NA	86050132	86023356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_86025814_86026882_86027092_86028722_86028929_86029688_86029766_86030485_86030592_86033478_86033632_86035735_86035811_86039174_86039321_86040788_86040853_86043294_86043421_86049168_86049292_86050022
82239	chr11	-	2502	7	ISM	ENSMUSG00000020744.14	ENSMUST00000178003.8	2614	8	364	13	17	-13	3prime_fragment	FALSE	canonical	2	19	junction_6	50.5854612402505	499	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTATATACCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	115518757	115505022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518462
82240	chr17	+	1508	5	NNC	ENSMUSG00000013766.12	novel	1142	3	NA	NA	-5553	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.963001415033	395	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTAAGAGAGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35290324	35297778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35290736_35293150_35293306_35296110_35296183_35296812_35296939_35297034
82241	chr10	-	4443	13	ISM	ENSMUSG00000058298.11	ENSMUST00000075540.8	4868	14	681	7	201	-7	3prime_fragment	FALSE	canonical	3	17	junction_3	8.05536398239638	36	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGGGCAGAGATGACTAA	NA	False	NA	NA	False	NA	NA	NA	53505854	53412431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_53414864_53417033_53417180_53417632_53417716_53423498_53423703_53424592_53424796_53439378_53439554_53487447_53487568_53488922_53489049_53491947_53492149_53496229_53496312_53498851_53499169_53501811_53502131_53505819
82242	chr4	-	2005	14	Antisense	novelGene_ENSMUSG00000028522.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGGGGAGGGGCGGGGCGG	6533	False	NA	NA	False	NA	NA	NA	103020197	102971945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_102972024_102972761_102972857_102975437_102975513_102988136_102988308_102996553_102996714_102997307_102997441_102998033_102998097_103000328_103000402_103005493_103005646_103006318_103006401_103007728_103007824_103012681_103012786_103016872_103017018_103019618
82243	chr3	-	2939	3	NNC	ENSMUSG00000038256.16	novel	4652	7	NA	NA	5135	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	13.5	4	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGCCTTTTTGTGCCTT	NA	False	NA	NA	False	NA	NA	NA	97116190	97110976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_97113258_97114462_97114724_97115793
82244	chr9	+	2032	10	FSM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	-53	3271	-44	-3271	multi-exon	FALSE	canonical	3	40	junction_2	21.6834692682276	152	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTCATCAATATTTT	NA	False	NA	NA	False	NA	NA	NA	72345763	72366036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72345962_72346521_72346744_72352124_72352253_72353488_72353592_72355810_72356041_72356432_72356650_72356733_72356842_72359862_72360121_72364059_72364186_72365594
82245	chr12	-	2751	10	ISM	ENSMUSG00000021097.16	ENSMUST00000109936.3	11866	13	68014	8687	-16191	-47	3prime_fragment	FALSE	canonical	3	35	junction_6	9.07309140559716	41	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCGGCTCTGAAACATGTG	NA	False	NA	NA	False	NA	NA	NA	104763321	104738062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_104738223_104740031_104740103_104740747_104740809_104743203_104743401_104746980_104748661_104750165_104750249_104751651_104751846_104756240_104756432_104758097_104758191_104763300
82246	chr16	-	2423	6	FSM	ENSMUSG00000004071.14	ENSMUST00000117713.8	1964	6	33	-492	33	-6	multi-exon	FALSE	canonical	1	5	junction_2	194.363988434072	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCATATTTCTATTTTA	NA	False	NA	NA	False	NA	NA	NA	4607761	4584710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4586514_4586608_4586832_4587503_4587660_4587906_4588016_4588534_4588600_4607694
82247	chr13	+	2766	1	ISM	ENSMUSG00000021488.9	ENSMUST00000224973.2	9905	21	102902	306	21716	-306	mono-exon	FALSE	NA	NA	NA	NA	NA	2	81	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAAAGCCTGTCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	55460496	55463262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55460500_55463300
82248	chr11	-	3315	5	FSM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	-838	0	-838	0	multi-exon	FALSE	canonical	0	0	junction_4	44.51404272811	137	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	NA	False	NA	NA	NA	84711179	84703886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709662
82249	chr1	+	2566	18	FSM	ENSMUSG00000026504.18	ENSMUST00000027785.15	2776	18	202	8	202	-8	multi-exon	FALSE	canonical	1	6	junction_6	3.6941925807312	43	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAAGACTTGAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	176642427	176847995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746_176672936_176681329_176681469_176695777_176695931_176702129_176702265_176705555_176705673_176747109_176747253_176773673_176773802_176775846_176775956_176783357_176783490_176839454_176839582_176847680
82250	chr19	-	1727	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	3	97	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	228	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCTTTCTCCATATCTCA	9787	False	NA	NA	False	NA	NA	NA	60215115	60187233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
82251	chr7	-	1856	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2685	-7	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	25.6515106767613	254	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCATATAGACACCTCTTG	NA	False	NA	NA	False	NA	NA	NA	44755960	44742420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753189_44755780
82252	chr17	+	3521	2	Fusion	ENSMUSG00000117282.2_ENSMUSG00000117051.2	novel	599	3	NA	NA	-1	-33	intron_retention	FALSE	canonical	3	12	junction_1	0	21	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAGATTGCTAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	13414763	13425063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_13416107_13422885
82254	chr19	+	1848	11	NIC	ENSMUSG00000024909.16	novel	2634	11	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	23.0008695487801	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	5523973	5531881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_5524352_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
82255	chr3	-	3594	1	Genic_Genomic	ENSMUSG00000105260.2	novel	NA	NA	NA	NA	-35	-750	mono-exon	FALSE	NA	NA	NA	NA	NA	3	49	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACAGGCCTGTTTTCTCCA	NA	False	NA	NA	False	NA	NA	NA	41436355	41432761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_41432800_41436400
82256	chr3	-	1628	4	NIC	ENSMUSG00000028041.18	novel	2975	23	NA	NA	-798	1	intron_retention	FALSE	canonical	3	59	junction_2	44.5944690142922	104	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTCTGCTCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	89249262	89246953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89247261_89247361_89247487_89247707_89248885_89249243
82257	chr7	-	1051	2	ISM	ENSMUSG00000060601.14	ENSMUST00000208322.2	1450	6	1399	-4	777	4	intron_retention	FALSE	canonical	3	684	junction_1	0	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTACAAGCCATTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	44200270	44199051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44199556_44199723
82258	chr18	+	1209	7	ISM	ENSMUSG00000024260.15	ENSMUST00000025109.8	4015	21	40054	11779	39258	-1732	internal_fragment	FALSE	canonical	3	84	junction_3	30.3241744414511	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGTGCCTCCCCAAGGA	3387	False	NA	NA	False	NA	NA	NA	31807489	31844335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_31807550_31810408_31810531_31813421_31813725_31815062_31815238_31822450_31822556_31831574_31831934_31844250
82259	chr3	+	4387	15	ISM	ENSMUSG00000028053.14	ENSMUST00000090933.5	11268	27	86927	5	-63	-5	3prime_fragment	FALSE	canonical	3	8	junction_1	3.1943828249997	55	23	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAACTGTGGAGTCTTT	9180	False	NA	NA	False	NA	NA	NA	88960045	88986675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88960215_88960383_88960479_88961669_88961825_88965794_88965948_88970957_88971013_88971092_88971226_88973478_88973728_88974461_88974549_88976293_88976385_88977534_88977674_88977780_88977954_88979752_88979920_88982031_88982073_88983282_88983585_88984297
82260	chr15	+	1852	11	ISM	ENSMUSG00000006369.15	ENSMUST00000057410.14	3659	17	25586	852	25530	-852	3prime_fragment	FALSE	canonical	3	136	junction_10	137.262558623974	211	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAAAGTGGATTGCAAT	NA	False	NA	NA	False	NA	NA	NA	85115735	85169884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85147459_85147603_85149450_85149583_85169240
82261	chr13	-	3928	4	NIC	ENSMUSG00000042167.7	novel	3081	15	NA	NA	5278	201	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	214.361584452273	11	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATTTAAGAAAATGTATTT	NA	False	NA	NA	False	NA	NA	NA	93299659	93283924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_93284174_93285388_93285469_93287191_93287284_93296152
82262	chr15	-	2824	7	NNC	ENSMUSG00000022472.17	novel	1855	7	NA	NA	4	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	66.7308024828115	120	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTCATGTCTGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	81900360	81876742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81879047_81882310_81882434_81883705_81883816_81886741_81886812_81887958_81887981_81900078_81900196_81900282
82263	chr14	+	1664	4	NNC	ENSMUSG00000115092.2	novel	415	3	NA	NA	-10589	216	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	6.54896090146283	74	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAATTTTCCTACCCATG	NA	False	NA	NA	False	NA	NA	NA	76753442	76768402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_76753538_76764032_76764202_76766569_76766669_76767101
82264	chr10	-	2651	10	ISM	ENSMUSG00000064181.7	ENSMUST00000219109.2	1844	11	10951	-980	10900	-13	3prime_fragment	TRUE	canonical	3	251	junction_7	35.4526288008222	125	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTAATTGTCTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	116775385	116741701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105
82265	chr9	-	4790	1	FSM	ENSMUSG00000074102.5	ENSMUST00000055843.9	6511	1	1705	16	-104	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	95	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTACATTAAAGAAAAAGACC	NA	False	NA	NA	False	NA	NA	NA	106762922	106758132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_106758100_106762900
82266	chr7	+	1800	1	Intergenic	novelGene_3017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCAAGGCATCCACTTAA	NA	False	NA	NA	False	NA	NA	NA	107158423	107160223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_107158400_107160200
82267	chr16	-	3060	6	FSM	ENSMUSG00000022656.16	ENSMUST00000023334.15	3062	6	306	-304	111	304	multi-exon	FALSE	canonical	3	205	junction_1	19.3328735577513	77	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAGGTACACTTAACTCCA	NA	False	NA	NA	False	NA	NA	NA	46317024	46267227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_46269332_46274986_46275139_46278476_46278595_46279177_46279475_46284180_46284523_46316977
82268	chr5	+	5690	23	ISM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	110254	1109	4769	-1109	3prime_fragment	TRUE	canonical	3	38	junction_4	12.2943412367756	49	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGTAGTTGAACCTTCT	NA	False	NA	NA	False	NA	NA	NA	4088527	4130201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
82269	chr9	-	1879	8	NNC	ENSMUSG00000050627.14	novel	4391	8	NA	NA	-1340	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.1773750277355	1	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCCAAGAAGACTTTTTG	NA	False	NA	NA	False	NA	NA	NA	114749762	114729628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_114730441_114731410_114731571_114732728_114732836_114733842_114734077_114739943_114740057_114743393_114743533_114746048_114746190_114749589
82270	chr12	+	2867	4	ISM	ENSMUSG00000021268.18	ENSMUST00000143847.8	706	5	1363	4	1363	-1	3prime_fragment	FALSE	canonical	3	352	junction_1	30.6847772609735	108	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTAAAGCAGTGATGGGT	NA	False	NA	NA	False	NA	NA	NA	109513690	109538152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_109515988_109516087_109516246_109524670_109524755_109537824
82271	chr8	-	2360	6	NIC	ENSMUSG00000015994.11	novel	966	7	NA	NA	42	154	intron_retention	FALSE	canonical	3	814	junction_4	124.042573336738	6	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCATAGTGTTTGATGTTT	NA	False	NA	NA	False	NA	NA	NA	26501233	26488993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26489593_26489796_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117
82273	chrX	+	1650	14	NNC	ENSMUSG00000025037.7	novel	4167	15	NA	NA	14493	-2307	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	69.4643921383318	1	40	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTAAAGTGGTAACAGTC	NA	False	NA	NA	False	NA	NA	NA	16500429	16551750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_16500516_16505302_16505441_16524806_16524912_16525683_16525776_16528555_16528698_16530889_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547126_16548439_16548538_16550202_16550315_16551220_16551284_16551470
82274	chr7	-	2138	12	ISM	ENSMUSG00000030655.16	ENSMUST00000179331.9	12147	61	9868	54529	9868	2182	internal_fragment	FALSE	canonical	3	33	junction_10	7.30447615512751	2	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTTCTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	117802325	117787798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_117788396_117788481_117788570_117789005_117789125_117789711_117789874_117790007_117790139_117792672_117792943_117794258_117794361_117795033_117795259_117797413_117797588_117799883_117799982_117801752_117801826_117802226
82275	chr5	+	2504	7	FSM	ENSMUSG00000035851.15	ENSMUST00000124123.8	593	7	-984	-927	-984	0	multi-exon	FALSE	canonical	3	32	junction_1	111.142051247741	166	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTATTTCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	86976192	86984518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_86977339_86978412_86978496_86979522_86979560_86979631_86979696_86979806_86979870_86981366_86981502_86983542
82276	chr13	-	3045	7	Antisense	novelGene_ENSMUSG00000038175.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTCCGACAGCCCTACT	NA	False	NA	NA	False	NA	NA	NA	45565498	45543237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_45543518_45544662_45544854_45557873_45558060_45559366_45559564_45560029_45560195_45561828_45562247_45563890
82277	chrX	+	3105	3	FSM	ENSMUSG00000042903.9	ENSMUST00000062000.6	3162	3	39	18	0	-18	multi-exon	FALSE	canonical	1	1	junction_1	0.5	54	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGTCTATAATCAGATC	3397	False	NA	NA	False	NA	NA	NA	100298172	100304461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100298880_100301782_100302840_100303120
82278	chr8	-	4206	6	Antisense	novelGene_ENSMUSG00000031628.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCAGCAGCAGCAGCAAC	NA	False	NA	NA	False	NA	NA	NA	47092716	47070469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_47070536_47082767_47082837_47085351_47087361_47088410_47088584_47089232_47089355_47090949
82279	chr2	+	3249	10	FSM	ENSMUSG00000026739.14	ENSMUST00000028071.13	3594	10	342	3	80	-3	multi-exon	FALSE	canonical	3	69	junction_8	5.61303597347337	63	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCATCGTGGTTTGCTTCT	4997	False	NA	NA	False	NA	NA	NA	18682170	18691437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_18682281_18686603_18686735_18687033_18687131_18687649_18687706_18687791_18687843_18687985_18688095_18688179_18688220_18688475_18688575_18688796_18688878_18688962
82280	chr13	+	6005	4	ISM	ENSMUSG00000021366.9	ENSMUST00000060148.6	8753	9	47	24862	47	876	5prime_fragment	FALSE	canonical	1	3	junction_2	1.24721912892465	24	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAAATCCACTTGGTTTGC	NA	False	NA	NA	False	NA	NA	NA	42205543	42313640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_42205567_42208875_42209019_42276635_42276690_42307855
82281	chr15	+	2391	5	NNC	ENSMUSG00000044250.9	novel	1790	2	NA	NA	-11399	4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	1.92028643696715	21	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAAAAGTGGTTCTGCC	NA	False	NA	NA	False	NA	NA	NA	97133588	97283565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_97134036_97175214_97175298_97177731_97177797_97259080_97259217_97281905
82282	chr2	-	557	4	NNC	ENSMUSG00000018770.10	novel	723	5	NA	NA	-41	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1770.65486943861	6	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTAAAGATGAAAACTTTA	NA	False	NA	NA	False	NA	NA	NA	73741711	73738811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739052_73739527_73739609_73741294_73741405_73741585
82283	chr2	-	2189	5	NNC	ENSMUSG00000027377.3	novel	2006	4	NA	NA	-814	-4	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	23.2849200127464	148	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTGTGGAGTCTATCGC	NA	False	NA	NA	False	NA	NA	NA	127572666	127546309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675_127571900_127572526
82284	chr13	+	1293	13	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-7	-850	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	229.303050326176	10	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTAGACCTAGTGT	NA	False	NA	NA	False	NA	NA	NA	107083627	107095418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_107083792_107084093_107084168_107084575_107084629_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
82285	chr10	-	1690	8	NNC	ENSMUSG00000034748.17	novel	1891	8	NA	NA	-34	-8	intron_retention	FALSE	canonical	0	0	junction_4	78.6446412150042	635	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTTACATTTTGTTACA	9855	False	NA	NA	False	NA	NA	NA	81463434	81457628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460886_81460951_81461549_81461733_81462323_81462452_81463305
82287	chr14	+	2848	5	Fusion	ENSMUSG00000052334.12_ENSMUSG00000079271.5	novel	1761	5	NA	NA	-37677	361	intron_retention	FALSE	canonical	0	0	junction_2	36.1559123795818	6	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATGTATGCTTCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	41709228	41826139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_41709388_41746929_41747062_41818127_41819378_41820058_41820240_41825013
82288	chr9	+	3127	12	FSM	ENSMUSG00000040875.13	ENSMUST00000182384.8	2158	12	42	-1011	42	1011	multi-exon	FALSE	canonical	1	3	junction_1	20.7380354832004	80	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGTAGATATTAGACAAA	NA	False	NA	NA	False	NA	NA	NA	114819857	115062304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_114819891_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
82289	chr10	-	2010	4	Antisense	novelGene_ENSMUSG00000019779.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGTCTTAAATACCAACAA	NA	False	NA	NA	False	NA	NA	NA	34479683	34220834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_34222403_34406804_34407095_34479422_34479530_34479638
82290	chr13	+	3442	3	Antisense	novelGene_ENSMUSG00000069206.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1	21	32	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTCTTCACACTAGTAAGA	NA	False	NA	NA	False	NA	NA	NA	67568501	67573496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_67569120_67569397_67569619_67570893
82291	chr13	+	5637	14	Antisense	novelGene_ENSMUSG00000038014.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	42	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCATTCTCTCTGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	49039228	49102718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_49042740_49043232_49043414_49045355_49045566_49051132_49051253_49055534_49055784_49063731_49063906_49066331_49066558_49068334_49068426_49075157_49075440_49075626_49075729_49085774_49085871_49087427_49087553_49099415_49099502_49102534
82292	chr13	-	2008	6	NNC	ENSMUSG00000021731.11	novel	3319	5	NA	NA	0	-1077	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	780.334543641379	214	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTACGGTTTATTTC	NA	False	NA	NA	False	NA	NA	NA	118523788	118515993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769_118521916_118523187_118523375_118523608
82293	chr5	+	2711	5	ISM	ENSMUSG00000029381.17	ENSMUST00000113051.9	6435	10	52489	-3	2597	3	3prime_fragment	FALSE	canonical	3	119	junction_4	9.75961064797157	79	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAAATTGAATATGGAGAT	4817	False	NA	NA	False	NA	NA	NA	93098340	93113170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_93099180_93100397_93100890_93103119_93103271_93109949_93110223_93112214
82294	chr4	-	2194	12	NIC	ENSMUSG00000028538.13	novel	2225	12	NA	NA	34	-1	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	26.8084728187943	74	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGGCCTCCTGTTGTTTT	1928	False	NA	NA	False	NA	NA	NA	117992045	117789355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117790334_117797206_117797354_117797550_117797698_117814631_117814716_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117964745_117964891_117991930
82296	chr5	+	1287	3	Intergenic	novelGene_672	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_2	5.5	10	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGGACTCGCTGATCCTT	NA	False	NA	NA	False	NA	NA	NA	25440429	25444600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_25440605_25441774_25442078_25443791
82297	chr2	-	3363	10	FSM	ENSMUSG00000026737.13	ENSMUST00000006912.12	3477	10	114	0	114	0	multi-exon	FALSE	canonical	3	72	junction_7	14.3139403690559	72	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGCTTCTCTGTGCTGG	NA	False	NA	NA	False	NA	NA	NA	19002823	18847065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_18849272_18850685_18850790_18852244_18852489_18857623_18857738_18870922_18870962_18877094_18877242_18893862_18894016_18911039_18911137_18912865_18912964_19002662
82298	chr13	-	3765	1	NIC	ENSMUSG00000113955.2	novel	364	2	NA	NA	1236	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	63	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGCATGCCTTCGTTCCA	NA	False	NA	NA	False	NA	NA	NA	65643371	65639606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_65639600_65643400
82299	chr11	+	2112	1	Intergenic	novelGene_2214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAGTGCTGAAACCCGGGA	NA	False	NA	NA	False	NA	NA	NA	6739377	6741489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_6739400_6741500
82300	chr9	-	2507	9	FSM	ENSMUSG00000032000.18	ENSMUST00000013949.15	2667	9	148	12	-19	-12	multi-exon	FALSE	canonical	3	8	junction_2	6.89202437604511	49	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAGAAAATTGATGCT	297	False	NA	NA	False	NA	NA	NA	7872877	7848711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7872823
82302	chr6	+	4714	32	ISM	ENSMUSG00000030102.12	ENSMUST00000032192.9	9870	62	0	149231	0	410	5prime_fragment	TRUE	non_canonical	0	0	junction_26	13.8293449026714	9	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCATCTGGTCTGCAGGGT	NA	False	NA	NA	False	NA	NA	NA	108190056	108378839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_108190315_108191163_108191240_108213938_108214047_108218224_108218296_108316467_108316584_108326558_108326646_108328953_108329113_108331567_108331667_108333160_108333245_108333351_108333499_108340570_108340667_108342259_108342305_108345971_108346127_108353722_108353823_108354645_108354807_108355122_108355265_108357876_108358036_108358148_108358322_108359065_108359186_108360581_108360777_108363580_108363833_108364324_108364467_108365145_108365300_108366327_108366516_108368791_108368931_108369491_108369547_108370865_108371032_108371195_108371367_108371795_108371862_108372936_108373075_108376210_108376337_108378273
82303	chr11	+	1310	2	Antisense	novelGene_ENSMUSG00000047260.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGGGAGGGCTCGGTT	2650	False	NA	NA	False	NA	NA	NA	73066350	73067847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_73067580_73067766
82304	chr14	-	2146	1	Intergenic	novelGene_518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTGCACTTAATTTAAAA	NA	False	NA	NA	False	NA	NA	NA	14533353	14531207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_14531200_14533400
82305	chr19	-	2079	7	NNC	ENSMUSG00000097930.3	novel	2057	7	NA	NA	-17867	-45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.35889894354067	25	29	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGAACTCGATCTTTCGG	4761	False	NA	NA	False	NA	NA	NA	23071155	23014798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23015260_23015299_23015996_23028918_23029070_23039177_23039444_23040703_23040806_23040913_23041034_23070872
82306	chr1	+	1145	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9755.7165577704	5	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454447	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457186_86457275_86457662
82309	chr3	+	4997	14	FSM	ENSMUSG00000036885.15	ENSMUST00000079300.13	5638	14	639	2	-16	-2	multi-exon	FALSE	canonical	2	8	junction_11	5.33715346421589	28	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAGCTAGCATTATAGAA	NA	False	NA	NA	False	NA	NA	NA	62246403	62369640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_62247995_62248764_62248805_62252566_62252713_62285008_62285066_62288251_62288413_62326969_62327123_62330921_62331052_62334009_62334085_62336301_62336392_62339908_62340064_62355513_62355724_62365793_62365862_62367030_62367136_62367624
82310	chr11	-	1760	8	NNC	ENSMUSG00000034341.18	novel	1826	8	NA	NA	7	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	381.212887119681	2	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGCTACAACTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	115977791	115969439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973250_115974671_115974774_115977692
82311	chr15	+	3619	3	FSM	ENSMUSG00000032501.10	ENSMUST00000067543.8	4330	3	156	555	-147	-555	multi-exon	FALSE	canonical	3	22	junction_1	4.5	45	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATACAGTGAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	59520354	59528393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_59521372_59523327_59523621_59526084
82312	chr11	+	1661	13	NNC	ENSMUSG00000020537.10	novel	1788	13	NA	NA	-8	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	139.597312732811	13	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGGGGTGCGGGGAA	NA	False	NA	NA	False	NA	NA	NA	60345441	60359539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60345565_60347432_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
82313	chr12	+	640	6	Antisense	novelGene_ENSMUSG00000021098.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGCACGTTTAAGAATAT	NA	False	NA	NA	False	NA	NA	NA	72939501	72954669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_72939756_72945262_72945308_72945483_72945570_72949186_72949275_72952961_72953054_72954594
82314	chr18	+	1470	5	FSM	ENSMUSG00000024526.10	ENSMUST00000025404.10	1115	5	-257	-98	-257	98	multi-exon	FALSE	canonical	1	47	junction_1	40.4042077016738	449	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTCTTTTTAATTTGAT	5951	False	NA	NA	False	NA	NA	NA	67476416	67500953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_67476911_67491779_67491925_67493165_67493313_67499444_67499627_67500451
82315	chr9	+	2303	6	NNC	ENSMUSG00000010051.16	novel	2706	5	NA	NA	-10	5642	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	14.2070405081424	40	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGAAGTTTGTCCTCACC	NA	False	NA	NA	False	NA	NA	NA	107454146	107464551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298_107456589_107463580_107463671_107463773
82316	chr3	+	1922	5	NNC	ENSMUSG00000052310.10	novel	2364	4	NA	NA	30	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	59.7886904021153	3	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGATATGTTACCCAAATAA	NA	False	NA	NA	False	NA	NA	NA	90155508	90160883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992_90160108_90160483
82317	chr11	-	1452	6	ISM	ENSMUSG00000020777.17	ENSMUST00000148601.2	3538	13	7209	5994	50	1838	internal_fragment	FALSE	canonical	3	93	junction_2	5.42586398650021	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTAAAACATAATTACAAT	7477	False	NA	NA	False	NA	NA	NA	116073192	116068707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738
82318	chr13	+	1902	4	ISM	ENSMUSG00000021314.14	ENSMUST00000222698.2	3082	20	72571	-7	17599	-2	3prime_fragment	FALSE	canonical	3	65	junction_2	3.29983164553722	13	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGGTTCTTTTTCAAGAG	NA	False	NA	NA	False	NA	NA	NA	19321557	19335089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_19321913_19323341_19323603_19326134_19326237_19333905
82319	chr10	-	3864	1	Antisense	novelGene_ENSMUSG00000034612.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAAGGGTCTTCAGGTTGG	NA	False	NA	NA	False	NA	NA	NA	83030933	83027069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_83027100_83030900
82320	chr7	-	1660	2	NNC	ENSMUSG00000044709.7	novel	613	2	NA	NA	-3058	-11918	intron_retention	FALSE	non_canonical	0	0	junction_1	0	925	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCTCAGGTGAGTGAGTG	5467	False	NA	NA	False	NA	NA	NA	19314578	19311266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19311883_19313534
82321	chr7	+	2892	11	FSM	ENSMUSG00000042423.10	ENSMUST00000048896.8	2650	11	-90	-152	-90	-46	multi-exon	TRUE	canonical	3	17	junction_2	6.82348884369279	117	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTTTTTCAAATACATTC	470	False	NA	NA	False	NA	NA	NA	127084302	127090837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127084415_127084524_127084570_127084765_127084862_127085099_127085169_127086031_127086062_127086436_127086509_127086836_127086955_127087045_127087127_127088338_127088423_127088559_127088768_127088860
82322	chr4	-	3273	21	NNC	ENSMUSG00000003644.18	novel	3135	22	NA	NA	-293	-224	intron_retention	FALSE	canonical	2	2	junction_20	269.913504663994	3	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCCACAACGCCCATCCTC	7671	False	NA	NA	False	NA	NA	NA	133615401	133574828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588858_133590958_133591062_133591316_133591382_133592335_133592425_133592671_133592743_133593073_133593217_133593672_133593711_133594433_133594541_133596576_133596657_133596809_133596891_133598860_133598943_133599197_133599315_133608227_133608273_133615280
82323	chr2	+	1996	5	FSM	ENSMUSG00000079442.13	ENSMUST00000179989.2	2826	5	-543	1373	-13	1	multi-exon	FALSE	canonical	3	25	junction_3	5.71729831301464	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTCTCTGTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	32477093	32487714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
82324	chr13	-	2922	12	FSM	ENSMUSG00000038212.17	ENSMUST00000155487.8	3832	12	435	475	418	8	multi-exon	FALSE	canonical	3	418	junction_6	41.7491525128019	163	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACAATTTCTGTCATT	NA	False	NA	NA	False	NA	NA	NA	65260354	65212951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_65214676_65215676_65215820_65217457_65217556_65219818_65219932_65221369_65221442_65222799_65222914_65223297_65223517_65226167_65226283_65229213_65229342_65234902_65234966_65243432_65243529_65260317
82325	chr4	+	3452	8	FSM	ENSMUSG00000028277.14	ENSMUST00000124992.8	3530	8	75	3	-37	-3	multi-exon	FALSE	canonical	3	77	junction_6	15.4813910675932	85	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTTATTTACTGGTGTTA	43	True	NA	NA	False	NA	NA	NA	33031490	33052360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33045079_33045200_33049681
82326	chr12	+	3386	12	ISM	ENSMUSG00000052632.17	ENSMUST00000090834.13	5097	23	127798	401	127600	-401	3prime_fragment	FALSE	canonical	3	62	junction_10	9.47550125148755	1	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAGAAGAGAAAGCAACTG	2042	False	NA	NA	False	NA	NA	NA	21289554	21319771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_21289651_21294686_21294877_21297288_21297375_21299302_21299419_21301139_21301208_21302741_21302856_21304215_21304469_21308010_21308177_21315131_21315182_21315463_21315535_21315888_21316012_21317718
82327	chr7	-	1790	13	Antisense	novelGene_ENSMUSG00000093290.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGATAGAGGAAGTGGGCC	7322	False	NA	NA	False	NA	NA	NA	3659893	3648410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_3648583_3653798_3653873_3653977_3654046_3654167_3654301_3654490_3654581_3654804_3654935_3655030_3655123_3656195_3656419_3656507_3656643_3657140_3657196_3658566_3658952_3659031_3659153_3659781
82328	chr18	-	3891	1	FSM	ENSMUSG00000098253.3	ENSMUST00000184508.3	54	1	-2790	-1047	-2790	1047	mono-exon	FALSE	NA	NA	NA	NA	NA	36	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCAGAGTCAGCATTAA	NA	False	NA	NA	False	NA	NA	NA	68396834	68392943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_68392900_68396800
82329	chr2	-	1585	13	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	6	108	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	129.063587902329	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGCATGGTCCATAAAATG	NA	False	NA	NA	False	NA	NA	NA	48839282	48795219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48827463_48827541_48830344_48830413_48839128
82331	chr8	-	2538	14	FSM	ENSMUSG00000003575.14	ENSMUST00000076615.6	5683	14	-43	3188	-43	-3188	multi-exon	FALSE	canonical	3	29	junction_8	14.7616166270428	42	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTTTTATATTCCTGAG	5170	False	NA	NA	False	NA	NA	NA	70892272	70838192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
82332	chr5	+	1833	4	ISM	ENSMUSG00000008090.15	ENSMUST00000013633.12	2329	7	10164	-31	-408	3	3prime_fragment	FALSE	canonical	3	107	junction_2	5.71547606649408	98	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAAATTGCCTCCTTTTC	NA	False	NA	NA	False	NA	NA	NA	108852531	108854793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108852614_108852720_108853006_108853084_108853439_108853681
82333	chr14	+	2042	9	FSM	ENSMUSG00000092232.2	ENSMUST00000134077.2	1245	9	-10	-787	-10	787	multi-exon	FALSE	canonical	2	4	junction_2	1193.27375316815	804	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCCCTTTGGATGTTTTT	NA	False	NA	NA	False	NA	NA	NA	55120887	55136381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55120964_55121253_55121342_55121830_55122271_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
82334	chr17	+	1597	11	NIC	ENSMUSG00000055817.19	novel	882	8	NA	NA	99	-3	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	438.668724665892	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTACAGCCTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84036691	84100299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_84036957_84045757_84045885_84061282_84061347_84062987_84063106_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
82335	chr9	-	6430	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	29	1129	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	351.164593073635	969	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACCATGTGGTTGCCGA	NA	False	NA	NA	False	NA	NA	NA	96993181	96955884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
82336	chr4	+	1472	1	Antisense	novelGene_ENSMUSG00000042367.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	51	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATAGGTCTTGGAGCTTC	4266	False	NA	NA	False	NA	NA	NA	127219027	127220499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127219000_127220500
82337	chr4	-	1950	13	FSM	ENSMUSG00000040536.16	ENSMUST00000041606.14	4922	13	-29	3001	-29	-317	multi-exon	FALSE	canonical	2	6	junction_1	6.35249294896631	56	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCTAGGCTATAGCCTAT	604	False	NA	NA	False	NA	NA	NA	15149160	14955245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_14955922_14957825_14957918_14960007_14960086_14965905_14966019_14975132_14975187_14978154_14978232_14989157_14989280_15004968_15005106_15052619_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
82338	chr13	+	3055	1	Antisense	novelGene_ENSMUSG00000021572.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAACCGCTGGCCTGGCG	NA	False	NA	NA	False	NA	NA	NA	74207302	74210357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_74207300_74210400
82339	chr4	+	1823	4	Antisense	novelGene_ENSMUSG00000079998.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	18	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGCTTTTGTCAGAATAT	NA	False	NA	NA	False	NA	NA	NA	127302498	127323123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127302541_127311191_127311321_127318586_127319254_127322138
82340	chr11	-	2128	11	FSM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	-5	32	-5	-32	multi-exon	FALSE	canonical	2	3	junction_10	6.56429737291052	180	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGTATTAAAATTAAAATGTA	-2	True	NA	NA	False	NA	NA	NA	69686774	69674893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684975_69685086_69685794_69685840_69686420_69686561_69686647
82341	chr2	+	3142	2	Intergenic	novelGene_2831	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTAGTGGATCTTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	174162378	174165722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_174163248_174163449
82342	chr16	+	1194	8	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-117	125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1829.83900262023	2	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAATGGCTTATGTGTT	NA	False	NA	NA	False	NA	NA	NA	84571156	84620043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603763_84609819_84609987_84612056_84612157_84613153_84613275_84618147_84618191_84619674
82343	chr14	+	2547	11	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	125.754363741383	1	163	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATGTCGTTTTCCTTGTT	NA	False	NA	NA	False	NA	NA	NA	99283814	99311972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99284117_99287428_99287536_99290958_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
82344	chr7	+	1699	11	NNC	ENSMUSG00000023467.19	novel	2153	11	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	28.9635978428095	4	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTTTAGTTAGTGTACA	6760	False	NA	NA	False	NA	NA	NA	45135804	45172018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45135908_45165662_45165801_45165939_45166111_45167203_45167392_45168009_45168331_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171771_45171863
82345	chr4	-	3934	2	Intergenic	novelGene_1798	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	22	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACGGTCTTTCATGTTT	NA	False	NA	NA	False	NA	NA	NA	11181101	11175964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_11178675_11179877
82346	chr2	-	2889	11	NNC	ENSMUSG00000027166.15	novel	1197	5	NA	NA	66	62071	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.121956072853	2188	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAATAGGCCTTGCGATTG	NA	False	NA	NA	False	NA	NA	NA	105833481	105734982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_105735074_105738666_105738774_105761062_105761197_105763608_105763697_105767334_105767464_105794524_105794634_105795606_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
82347	chr5	+	2584	2	Intergenic	novelGene_812	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	44	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCTTTAAAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	110621470	110624275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110623927_110624147
82348	chr14	-	3401	11	FSM	ENSMUSG00000021972.15	ENSMUST00000022544.14	3396	11	-6	1	0	-1	multi-exon	FALSE	canonical	3	23	junction_3	9.87167665596883	58	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGGCTGTCCGGGATTTC	7679	False	NA	NA	False	NA	NA	NA	65187305	65049049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_65050869_65054465_65054586_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
82349	chr6	+	1120	9	NNC	ENSMUSG00000029993.17	novel	950	8	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	936.325364122963	784	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	NA	False	NA	NA	NA	86986236	87005441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86986321_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
82350	chr16	+	2571	12	ISM	ENSMUSG00000041957.16	ENSMUST00000039408.3	2918	13	12042	10	12042	-10	3prime_fragment	FALSE	canonical	3	76	junction_3	18.9344235902289	87	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAAATCGCTTTGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	16043223	16090566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_16043278_16043583_16044156_16048504_16048641_16058363_16058572_16064729_16064908_16078189_16078308_16079467_16079633_16080428_16080603_16085040_16085195_16086381_16086572_16087548_16087637_16090032
82351	chr12	-	2417	11	FSM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	86	378	58	7	multi-exon	FALSE	canonical	1	2	junction_6	69.4942443659905	155	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTCTTCTCAGGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	85197952	85182400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117_85187251_85187602_85187651_85193636_85193730_85194519_85194645_85196397_85196683_85197936
82352	chr3	-	2159	1	NIC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	14802	-128	mono-exon	FALSE	NA	NA	NA	NA	NA	2	92	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAAGGTCACAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	30739115	30736956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_30737000_30739100
82353	chr11	+	8924	22	NIC	ENSMUSG00000032740.18	novel	9376	32	NA	NA	-11	1369	combination_of_known_junctions	FALSE	canonical	3	23	junction_15	17.421674409454	56	76	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGATTTAATACTTCAGCT	NA	False	NA	NA	False	NA	NA	NA	29406484	29462177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29406603_29410848_29411034_29411710_29411849_29413119_29414191_29415610_29415739_29420314_29420457_29427293_29427459_29430489_29430652_29432108_29432387_29432597_29432742_29435824_29436012_29439581_29439728_29443699_29443793_29443878_29444094_29447342_29447427_29448408_29448613_29449334_29449407_29450975_29451057_29453382_29453652_29453851_29454312_29457124_29457224_29457694
82354	chr10	+	3291	23	FSM	ENSMUSG00000009681.11	ENSMUST00000164107.3	6839	23	1398	2150	1398	-11	multi-exon	FALSE	canonical	3	29	junction_3	6.08751601555753	34	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCTTCCTATTGTGGGG	NA	False	NA	NA	False	NA	NA	NA	74897821	75018603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_74898143_74960855_74961029_74966852_74966958_74967330_74967517_74971725_74971834_74976821_74976883_74978913_74978967_74981153_74981295_74989717_74989840_74990729_74990899_74992909_74993030_74993841_74993918_74995617_74995723_74996161_74996237_75001876_75001975_75003938_75004071_75011108_75011169_75012174_75012285_75013715_75013856_75015955_75016091_75016966_75017073_75017400_75017564_75018071
82355	chr11	+	5554	42	NIC	ENSMUSG00000034427.18	novel	9340	64	NA	NA	-502	-4	intron_retention	FALSE	canonical	1	2	junction_2	4.76166028663389	33	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAAAAGATTGTGTGTGA	1028	False	NA	NA	False	NA	NA	NA	115767839	115783410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115767920_115768570_115768622_115768923_115768982_115769137_115769269_115770383_115770480_115770576_115770813_115770894_115771074_115771261_115771335_115772007_115772170_115772329_115772431_115772526_115772604_115772722_115772805_115773034_115773134_115773232_115773337_115773636_115773829_115774028_115774111_115774242_115774345_115774432_115774734_115774823_115774912_115775005_115775232_115775901_115776015_115776219_115776280_115776846_115776923_115777016_115777136_115777216_115777336_115777409_115777552_115777687_115777800_115777887_115778534_115778692_115778757_115778847_115778921_115779237_115779315_115780691_115780763_115780847_115780964_115781062_115781158_115781277_115781356_115781440_115781538_115781648_115781795_115781930_115782050_115782326_115782461_115782630_115782765_115782873_115783015_115783108
82356	chr11	-	3169	13	NIC	ENSMUSG00000032633.13	novel	3567	13	NA	NA	-74	34	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	67.9384934252217	6	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAACTGCCGACTACATG	NA	False	NA	NA	False	NA	NA	NA	59700611	59682581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686402_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
82357	chr4	-	3368	15	FSM	ENSMUSG00000029053.17	ENSMUST00000103178.11	4083	15	59	656	59	-656	multi-exon	FALSE	canonical	1	1	junction_14	50.8262847795291	6	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGCCTCCCAGGAGTAC	NA	False	NA	NA	False	NA	NA	NA	155430170	155345241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155346989_155347158_155347275_155352151_155352242_155352640_155352721_155353489_155353610_155355655_155355744_155355925_155356062_155357397_155357485_155371236_155371335_155374087_155374277_155374959_155375013_155377614_155377697_155378723_155378856_155385386_155385473_155429906
82358	chr9	+	4545	6	ISM	ENSMUSG00000032076.21	ENSMUST00000124073.8	1371	8	257617	1462	257596	-1462	internal_fragment	FALSE	canonical	3	300	junction_1	18.4780951399218	34	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAGTTGTCCCAAACCCA	1846	False	NA	NA	False	NA	NA	NA	47699266	47728916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_47699416_47700994_47701148_47708704_47708843_47710669_47710829_47721341_47721442_47725070
82359	chr16	+	2530	1	Antisense	novelGene_ENSMUSG00000013089.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAGAGGACCTTTA	NA	False	NA	NA	False	NA	NA	NA	22204860	22207390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22204900_22207400
82360	chr5	+	4210	17	ISM	ENSMUSG00000041147.11	ENSMUST00000202313.2	10517	27	20145	0	-9577	0	3prime_fragment	TRUE	canonical	3	70	junction_2	23.6801604724292	119	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACTGGCTAAGTATGGT	8512	False	NA	NA	False	NA	NA	NA	150466253	150493212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_150466923_150468359_150468456_150471405_150471476_150471953_150472301_150474296_150474479_150475671_150475860_150476401_150476573_150477619_150477975_150480325_150480482_150480565_150480711_150481854_150481977_150483468_150483662_150483892_150484057_150484149_150484289_150490352_150490595_150491071_150491234_150492403
82361	chr1	+	829	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8590.17096453848	2	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTCAGACTTTACTTGTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686_86457905_86457959
82362	chrX	-	1348	2	Antisense	novelGene_ENSMUSG00000031065.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	336	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGCTATAAATAAAGAGGTA	NA	False	NA	NA	False	NA	NA	NA	20566119	20564692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20564763_20564841
82363	chr18	+	3188	4	ISM	ENSMUSG00000038773.12	ENSMUST00000223567.2	2997	5	4168	-647	4168	245	3prime_fragment	FALSE	canonical	3	334	junction_1	20.5318181259127	4	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAATACTTTTAATTTC	8384	False	NA	NA	False	NA	NA	NA	34963056	34971958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_34964617_34966363_34966541_34967269_34967405_34970642
82364	chr1	+	581	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	26	609	11	-106	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGGCCCCGCCCGCCCA	NA	False	NA	NA	False	NA	NA	NA	86454473	86457825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
82365	chr12	-	1295	11	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	-14	-2520	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_7	85.4534376137087	10	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	-84	True	NA	NA	NA	55349461	55328295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55344591_55344676_55345195_55345301_55345678_55345807_55349378
82366	chr12	-	1619	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	27	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_10	92.810123414768	7	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7699	False	NA	NA	False	NA	NA	NA	110807334	110774231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110796401_110796541_110800559_110800675_110807179
82367	chr4	+	3277	12	ISM	ENSMUSG00000028613.16	ENSMUST00000238570.2	3532	16	20339	-150	-2983	-3	3prime_fragment	FALSE	canonical	3	46	junction_3	9.90366824101551	39	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATTTGTATAGAATTTTC	1424	False	NA	NA	False	NA	NA	NA	107708520	107731092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_107708625_107708696_107708823_107711445_107711621_107712774_107713003_107714053_107714173_107714377_107714518_107715818_107715961_107717128_107717282_107718329_107718555_107721205_107721275_107726174_107726348_107729469
82368	chr1	+	1796	4	NNC	ENSMUSG00000025940.7	novel	1636	3	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	240.428783634572	351	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTATGTGTTTGTTTGG	NA	False	NA	NA	False	NA	NA	NA	16735430	16748422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_16735730_16735931_16736092_16737891_16737998_16747191
82369	chr13	+	2443	2	FSM	ENSMUSG00000012429.10	ENSMUST00000221480.2	582	2	-26	-1835	-26	-14	multi-exon	FALSE	canonical	3	11	junction_1	0	115	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACACTTGAAAACAATTAC	NA	False	NA	NA	False	NA	NA	NA	17869750	17873676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_17869944_17871426
82370	chr1	-	3114	6	NNC	ENSMUSG00000032666.17	novel	9559	6	NA	NA	-15284	2055	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	28.4351894665747	52	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTGTACTTTATTT	995	False	NA	NA	False	NA	NA	NA	151946327	151766598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151769184_151791232_151791294_151796797_151796875_151856176_151856272_151882295_151882519_151946254
82371	chr10	-	1735	2	Antisense	novelGene_ENSMUSG00000045193.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCTTTTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80007485	80005563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_80006339_80006525
82372	chrX	+	1501	6	FSM	ENSMUSG00000001131.12	ENSMUST00000115342.10	883	6	0	-618	0	616	multi-exon	FALSE	canonical	3	578	junction_1	90.9382207875215	4629	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGGGTCTCATTGTTC	NA	False	NA	NA	False	NA	NA	NA	20736404	20741590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20736564_20737272_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
82373	chr10	+	1736	1	Genic_Genomic	ENSMUSG00000061371.8	novel	NA	NA	NA	NA	3570	819	mono-exon	FALSE	NA	NA	NA	NA	NA	13	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGCAAAAGTCTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	81899662	81901398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_81899700_81901400
82374	chr7	+	1931	14	NNC	ENSMUSG00000030539.14	novel	3760	14	NA	NA	14370	-43	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	23.9876694162578	5	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTAAATAAAATCCGA	3432	False	NA	NA	False	NA	NA	NA	79862653	79876116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79862708_79863010_79863074_79865371_79865471_79866076_79866189_79866477_79866592_79866695_79866848_79868630_79868813_79868933_79869085_79869868_79870080_79870189_79870306_79870535_79870703_79873681_79873765_79874343_79874536_79875881
82375	chr5	-	2520	1	FSM	ENSMUSG00000029544.17	ENSMUST00000201900.2	3914	1	3757	-2363	872	2363	mono-exon	FALSE	NA	NA	NA	NA	NA	4	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATACAATGTACCAACTA	8554	False	NA	NA	False	NA	NA	NA	115318446	115315926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115315900_115318400
82376	chr9	+	2263	6	NIC	ENSMUSG00000056267.15	novel	1768	6	NA	NA	-8	114	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	140.694562794729	171	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATACACCTATATAATAA	NA	False	NA	NA	False	NA	NA	NA	99125526	99147095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99125938_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
82377	chr6	+	2556	11	NIC	ENSMUSG00000046679.17	novel	2534	10	NA	NA	-7	-24	combination_of_known_junctions	TRUE	canonical	2	4	junction_7	10.3058235963944	59	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTGTCACTAGTTTTTC	1461	False	NA	NA	False	NA	NA	NA	86415363	86447346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86415470_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86431241_86431296_86434797_86434906_86439562_86439664_86442782_86442946_86446727
82378	chr7	-	3359	10	NNC	ENSMUSG00000025104.14	novel	5887	6	NA	NA	48405	21835	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	76	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCCGGGGGTCCCCTGGC	NA	False	NA	NA	False	NA	NA	NA	81535366	81509163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81509288_81512895_81512997_81514990_81515091_81518386_81518493_81520444_81520525_81521113_81521237_81523477_81523581_81525466_81525563_81525720_81525841_81532960
82379	chr3	-	2984	2	FSM	ENSMUSG00000053192.10	ENSMUST00000065482.6	1923	2	4	-1065	4	1065	multi-exon	FALSE	canonical	3	62	junction_1	0	267	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAACACGCACCAGTAACCA	6384	False	NA	NA	False	NA	NA	NA	95135984	95125380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95127775_95135394
82380	chr10	+	1792	11	FSM	ENSMUSG00000035027.19	ENSMUST00000105331.8	1556	11	214	-450	-184	-364	multi-exon	FALSE	canonical	3	562	junction_7	62.3128397683816	379	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTACAAGTCTGGGGAGTG	1346	False	NA	NA	False	NA	NA	NA	80941994	80960167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80942073_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956879_80956945_80957736_80957799_80958400_80958447_80959453
82381	chr1	+	1208	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	12	-4	-12	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	1	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454443	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
82382	chr4	-	2478	12	FSM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	37	2638	37	356	multi-exon	FALSE	canonical	2	39	junction_10	9.94031776933574	100	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGGCATTTTCACACACAG	4225	False	NA	NA	False	NA	NA	NA	135221897	135178840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
82383	chr2	-	3531	9	Antisense	novelGene_ENSMUSG00000000305.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGACTTTCTGGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	179539544	179515874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_179516003_179523599_179523787_179527644_179527901_179528511_179528655_179530880_179531114_179532530_179532770_179534984_179535125_179535820_179535984_179537502
82384	chr10	+	2519	5	ISM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	26640	488	-1560	-4	3prime_fragment	FALSE	canonical	3	66	junction_1	3.63145976158349	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAAGAATGTGTTTATCT	NA	False	NA	NA	False	NA	NA	NA	39515569	39530815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
82385	chr14	-	3612	3	NNC	ENSMUSG00000043004.14	novel	3826	4	NA	NA	41435	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	66.5	35	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTACGGGGTCACTTTC	NA	False	NA	NA	False	NA	NA	NA	19985326	19922626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19926004_19941353_19941470_19985207
82386	chr16	-	3463	5	NIC	ENSMUSG00000050312.13	novel	3813	6	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	11.9660979437743	29	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	NA	NA	NA	62607134	62552806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_62555782_62589969_62590092_62591020_62591176_62606150_62606261_62607033
82387	chr13	-	2977	8	FSM	ENSMUSG00000053216.16	ENSMUST00000110433.10	2370	8	13	-620	3	620	multi-exon	TRUE	canonical	1	1	junction_2	2.18529407725405	14	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCATATGAACAGTGTC	NA	False	NA	NA	False	NA	NA	NA	23673014	23661225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_23663012_23664619_23664647_23664736_23664758_23665941_23666116_23666888_23667171_23670298_23670647_23672002_23672133_23672805
82388	chr7	+	3194	4	NNC	ENSMUSG00000030935.16	novel	3295	17	NA	NA	5446	2880	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	85	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGAGAGCCACAAAATCT	NA	False	NA	NA	False	NA	NA	NA	119385404	119389616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_119385765_119385958_119386054_119386629_119386709_119386956
82389	chr3	-	2370	4	NNC	ENSMUSG00000049940.8	novel	3007	3	NA	NA	38	-361	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	276.591556069394	199	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGATAATTTCTTAATTCCA	NA	False	NA	NA	False	NA	NA	NA	41037443	41021121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_41023160_41024714_41024871_41037029_41037148_41037385
82390	SIRV6003	+	2785	1	FSM	SIRV6003A	SIRV6003	6000	1	3193	22	3193	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	2	117	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGGCTCATTTTTCGTG	NA	False	NA	NA	False	NA	NA	NA	3193	5978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6003_+_3200_6000
82391	chr5	-	1369	8	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	-3	-440	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	286.265967382839	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	NA	False	NA	NA	NA	124717127	124708715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124716499_124716602_124717063
82392	chr15	-	2468	2	Intergenic	novelGene_3293	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_1	0	42	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCACAAATTTATTTTA	NA	False	NA	NA	False	NA	NA	NA	57840476	57837907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_57839652_57839752
82393	chr5	+	5301	35	NNC	ENSMUSG00000106663.2	novel	525	2	NA	NA	-57649	34525	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	42	13	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTAGGCTTTGGAGCC	NA	False	NA	NA	False	NA	NA	NA	125106255	125201948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_125106333_125107034_125107291_125107749_125107974_125109080_125109433_125110388_125110688_125111049_125111128_125111418_125111558_125113036_125113193_125113886_125113982_125114124_125114235_125114341_125114449_125114928_125115060_125115950_125116118_125118859_125119027_125119806_125119929_125125002_125125599_125126405_125126460_125127974_125128122_125132795_125132939_125142902_125142967_125144839_125145012_125145994_125146147_125156074_125156171_125158193_125158247_125161942_125162124_125163904_125163999_125164857_125165033_125168718_125168785_125175010_125175067_125179709_125179766_125183263_125183377_125186956_125187139_125195682_125195861_125196546_125196676_125201834
82394	chr2	-	1465	4	ISM	ENSMUSG00000034032.16	ENSMUST00000136419.8	4546	24	19263	0	11965	0	3prime_fragment	FALSE	canonical	3	455	junction_3	15.4128373622625	2	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATCTGGACTGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	119598718	119594443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972
82395	chr7	-	1878	2	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	5967	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	76	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCTGTGTGTGTGTGTG	9286	False	NA	NA	False	NA	NA	NA	19300926	19298870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_19300472_19300649
82396	chr17	+	3119	9	NNC	ENSMUSG00000097405.2	novel	2964	7	NA	NA	8805	22132	intron_retention	FALSE	non_canonical	0	0	junction_1	25.4653563689967	23	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGGCCCGAGGCTACAGC	NA	False	NA	NA	False	NA	NA	NA	26179250	26204716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26179537_26179622_26179782_26180689_26180849_26180929_26181056_26181645_26181868_26181934_26182123_26182223_26182430_26183000_26184502_26204444
82397	chr4	-	4064	14	ISM	ENSMUSG00000028664.15	ENSMUST00000059287.14	4804	16	64796	8	64683	-8	3prime_fragment	FALSE	canonical	1	3	junction_10	8.17486405800512	37	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAAATGACCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	136498471	136380926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_136382742_136383223_136383380_136384713_136384908_136386245_136386396_136386873_136387090_136387962_136388211_136388704_136388828_136399753_136399819_136400573_136400683_136402678_136402845_136411230_136411356_136421045_136421382_136423309_136423466_136498266
82398	chr7	+	3516	11	ISM	ENSMUSG00000030428.17	ENSMUST00000206869.2	1491	13	946	-2081	-232	-388	3prime_fragment	FALSE	canonical	3	27	junction_10	13.9513440212762	83	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGAACAATAATTGATAAGA	6195	False	NA	NA	False	NA	NA	NA	4128433	4139319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4128743_4131168_4131265_4132299_4132373_4132656_4132733_4133579_4133636_4133795_4133889_4134289_4134383_4136073_4136217_4136355_4136402_4136661_4136738_4136864
82399	chr11	-	544	3	NNC	ENSMUSG00000078812.11	novel	1343	6	NA	NA	72	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10549	191	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTTGTTTATTTGTTGA	6343	False	NA	NA	False	NA	NA	NA	69812140	69807537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807895_69810127_69810163_69811988
82400	chr17	+	1674	5	NNC	ENSMUSG00000024457.17	novel	3203	10	NA	NA	0	-526	intron_retention	FALSE	non_canonical	0	0	junction_3	112.667652855644	2	57	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTGTGAAGGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	37148064	37169746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_37148157_37148356_37148465_37161547_37161769_37168420_37168998_37169070
82401	chr11	-	4298	2	FSM	ENSMUSG00000070407.6	ENSMUST00000094103.4	4911	2	613	0	613	0	multi-exon	FALSE	canonical	3	10	junction_1	0	23	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGAGTATGTTCCTATT	NA	False	NA	NA	False	NA	NA	NA	63812503	63776617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_63780572_63812159
82402	chr7	-	1769	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	68	18	-17	-18	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	437	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCCTGACCCTCCTAAC	NA	False	NA	NA	False	NA	NA	NA	44145869	44139379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
82403	chr4	+	2166	4	NNC	ENSMUSG00000050213.7	novel	2345	4	NA	NA	121	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.1354455948547	97	12	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCATTTTAGAGGGTATT	NA	False	NA	NA	False	NA	NA	NA	124960615	124967829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_124960724_124961882_124961986_124964899_124965484_124966458
82404	chr12	-	2129	7	NNC	ENSMUSG00000020547.6	novel	729	6	NA	NA	18	1032	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	511.235323071045	3	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCTTCTTCCCCAAGTTG	NA	False	NA	NA	False	NA	NA	NA	36206806	36152439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_36153883_36154260_36154400_36157494_36157548_36173925_36174038_36179990_36180168_36184889_36184955_36206666
82405	chr1	-	1551	6	FSM	ENSMUSG00000026049.12	ENSMUST00000147571.8	1360	6	-1	-190	-1	-4	multi-exon	FALSE	canonical	3	149	junction_5	107.444125013888	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACAATGGTGCCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	44141523	44125779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059
82406	chr13	+	440	3	Antisense	novelGene_ENSMUSG00000021660.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGATGCCTGAACTTTA	NA	False	NA	NA	False	NA	NA	NA	98446461	98449734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_98446710_98447488_98447548_98449601
82407	chr13	-	1349	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	14	0	14	0	multi-exon	FALSE	canonical	3	2063	junction_1	0	927	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATTATTTTGTTGAA	NA	False	NA	NA	False	NA	NA	NA	30729331	30724290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_30725325_30729016
82408	chr17	-	2073	1	NIC	ENSMUSG00000117654.2	novel	1195	2	NA	NA	2	-12206	mono-exon	FALSE	NA	NA	NA	NA	NA	28	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCATGTGGTTGCTGGGA	NA	False	NA	NA	False	NA	NA	NA	33096914	33094841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_33094800_33096900
82409	chr11	-	2840	7	FSM	ENSMUSG00000017386.11	ENSMUST00000017530.4	2078	7	127	-889	54	-12	multi-exon	FALSE	canonical	3	457	junction_4	31.7525152109596	212	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAGTTACTTAGCTTTGT	NA	False	NA	NA	False	NA	NA	NA	78056288	78049336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78051375_78051618_78051775_78051858_78052021_78052112_78052275_78052343_78052449_78053207_78053260_78056123
82410	chr1	+	2593	1	FSM	ENSMUSG00000050229.4	ENSMUST00000052455.4	7554	1	4922	39	4922	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	55	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTGAAAAATTCTACCTG	NA	False	NA	NA	False	NA	NA	NA	172209034	172211627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172209000_172211600
82411	chr6	-	2817	12	NIC	ENSMUSG00000004267.17	novel	2795	12	NA	NA	0	-13	combination_of_known_junctions	FALSE	canonical	1	3	junction_11	14.8591180232796	2	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTACCACCACACTTGG	10019	False	NA	NA	False	NA	NA	NA	124746483	124737030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746211
82412	chr15	-	3761	1	ISM	ENSMUSG00000036197.17	ENSMUST00000049484.13	6611	8	31659	0	31649	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGTGTCTAAATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	93141383	93137622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_93137600_93141400
82413	chrX	-	3190	13	Antisense	novelGene_ENSMUSG00000019558.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	417	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCGACCCGCTGCTGCTT	NA	False	NA	NA	False	NA	NA	NA	72726108	72716764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72716906_72719241_72719373_72720253_72720506_72720926_72721058_72722239_72722374_72722468_72722570_72722663_72722791_72723286_72723402_72723522_72723663_72723737_72723840_72723936_72724037_72724108_72724280_72724563
82414	chr14	-	1350	1	Antisense	novelGene_ENSMUSG00000021911.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	32019024	32017674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_32017700_32019000
82416	chrX	-	2311	6	NNC	ENSMUSG00000058328.14	novel	1474	8	NA	NA	-11554	-9186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAGGAAAGGAGGAGGGGA	NA	False	NA	NA	False	NA	NA	NA	72172862	72161200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72161361_72166671_72166740_72167032_72167130_72168421_72168588_72170422_72170707_72171326
82417	chrX	-	3430	21	ISM	ENSMUSG00000031012.18	ENSMUST00000115438.10	8366	26	220343	3933	51359	318	3prime_fragment	FALSE	canonical	3	85	junction_8	24.9805424280579	3	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATTGTATGTGTTCAATA	NA	False	NA	NA	False	NA	NA	NA	13492474	13387251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_13388587_13392236_13392321_13399578_13399782_13403824_13403906_13403999_13404081_13410752_13410869_13415403_13415601_13417185_13417222_13418611_13418681_13421116_13421186_13423230_13423317_13425558_13425638_13427753_13427943_13434714_13434796_13437272_13437351_13453082_13453205_13466595_13466696_13474972_13475057_13480708_13480832_13486888_13487065_13492433
82418	chr12	+	2851	18	FSM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	9	-53	9	-5	multi-exon	FALSE	canonical	3	315	junction_16	68.4977205187368	155	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTAAAACCTTGCACTG	1273	False	NA	NA	False	NA	NA	NA	111541493	111622647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
82419	chr17	+	1144	5	NIC	ENSMUSG00000034729.17	novel	1018	7	NA	NA	-161	-5	intron_retention	FALSE	canonical	3	1493	junction_4	198.460953338434	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCATGCCTGGCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	47683234	47689598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
82420	chr3	-	2081	5	NNC	ENSMUSG00000027845.16	novel	3705	5	NA	NA	-5	281	intron_retention	FALSE	non_canonical	0	0	junction_1	31.2999600638723	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCCATCCTCAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	103716710	103709919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_103710566_103710780_103711372_103714709_103714893_103715387_103715554_103716215
82421	chr9	+	3404	15	NIC	ENSMUSG00000032177.18	novel	3594	14	NA	NA	-1	685	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	5.62429133857986	17	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTCACTCCACTCCCCTAC	1163	False	NA	NA	False	NA	NA	NA	21092910	21123608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_21093117_21102622_21102815_21103690_21103728_21103815_21103887_21105870_21105921_21106041_21106155_21109888_21109983_21112516_21112714_21114493_21114593_21114683_21114849_21115619_21115720_21116265_21116421_21116586_21116710_21117440_21117624_21121989
82422	chr17	-	2557	3	Antisense	novelGene_ENSMUSG00000090509.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.5	19	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATAAAAATTTAAAAG	2029	False	NA	NA	False	NA	NA	NA	35914346	35911469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35912504_35912589_35913769_35914002
82423	chr16	+	4163	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	64	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1773.97861017967	27	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGGTCTATGAATTATT	NA	False	NA	NA	False	NA	NA	NA	84571074	84622820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606277_84609832_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
82424	SIRV1	+	1104	4	Antisense	novelGene_SIRV1A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCTATATTAACACTCAAG	NA	False	NA	NA	False	NA	NA	NA	1009	10363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV1_+_1322_6338_6814_7555_7790_10280
82425	chr5	-	3336	17	NNC	ENSMUSG00000036718.18	novel	3346	17	NA	NA	10	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6.51410728726508	18	19	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCCTGTGTGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	139722081	139692448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_139692665_139692816_139692864_139694640_139694756_139695270_139695345_139695445_139695537_139695957_139696082_139696156_139696220_139696337_139696488_139697308_139697467_139698041_139698136_139698895_139699153_139701460_139702601_139703193_139703310_139703977_139704169_139704998_139705141_139707702_139707752_139721772
82426	ERCC-00171	+	489	1	FSM	ERCC-00171A	DQ854994	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1726	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00171_+_0_500
82427	chr15	-	4585	24	NNC	ENSMUSG00000037343.9	novel	5031	26	NA	NA	5881	-23	intron_retention	FALSE	non_canonical	0	0	junction_12	81.9764824037772	2	229	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATAACTTTTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	54929414	54878549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910870_54911621_54911732_54912022_54912131_54912790_54912946_54915511_54915648_54917629_54917713_54919182_54919283_54922194_54922328_54923330_54923484_54925448_54925694_54926428_54926531_54927983_54928103_54929255
82428	chr11	-	3232	3	Intergenic	novelGene_2237	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3	16	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCATATCTGTGTTCTGT	NA	False	NA	NA	False	NA	NA	NA	23045584	23039828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_23040308_23040460_23042885_23045255
82429	chr8	+	1414	9	FSM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	16	3	16	-3	multi-exon	FALSE	canonical	3	269	junction_4	29.4573314303927	480	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTGGTGTATGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	71849520	71857260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
82430	chr17	-	5080	10	Fusion	ENSMUSG00000116560.2_ENSMUSG00000116868.2	novel	985	8	NA	NA	8316	-10753	intron_retention	FALSE	non_canonical	0	0	junction_7	15.6497150212684	4	89	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTCATGGAGTCAGGAAT	NA	False	NA	NA	False	NA	NA	NA	6841786	6789942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_6791227_6792929_6793075_6795963_6796109_6803306_6803476_6809624_6809760_6812795_6815707_6817281_6817358_6819117_6819159_6831826_6831892_6841677
82431	chr8	+	3329	20	FSM	ENSMUSG00000014791.11	ENSMUST00000109375.4	3189	20	-14	-126	-6	126	multi-exon	FALSE	canonical	2	9	junction_11	6.90778195396653	65	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAAGTCAATTCTTCTC	NA	False	NA	NA	False	NA	NA	NA	106032226	106037518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106032462_106032598_106032640_106032746_106032820_106033009_106033061_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
82432	chr11	+	1308	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	244	410	244	-410	multi-exon	FALSE	canonical	3	642	junction_4	47.0451910401053	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTGTTGGGGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	115494994	115498452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
82433	chrX	+	4221	1	FSM	ENSMUSG00000119926.1	ENSMUST00000122667.3	104	1	-1265	-2852	-1265	2852	mono-exon	FALSE	NA	NA	NA	NA	NA	51	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTGTCTACCAAAGT	NA	False	NA	NA	False	NA	NA	NA	35626286	35630507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_35626300_35630500
82434	chr6	-	1163	3	NNC	ENSMUSG00000063694.6	novel	3123	3	NA	NA	13	798	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2454.5	40	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGTGATCCTTTGATTGTG	NA	False	NA	NA	False	NA	NA	NA	50543505	50541418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_50542295_50542471_50542649_50543395
82435	chr7	-	2238	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	37	890	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	270.894236741943	2228	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAATTAAGAAAACCTCTG	NA	False	NA	NA	False	NA	NA	NA	28092096	28084680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28086450_28089326_28089431_28090236_28090322_28090514_28090574_28091875
82436	chr14	+	1290	4	FSM	ENSMUSG00000022111.10	ENSMUST00000227815.2	1270	4	43	-63	-6	63	multi-exon	FALSE	canonical	0	0	junction_1	2159.4787951417	124	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCTAGAAGAGAAATTGCT	133	False	NA	NA	False	NA	NA	NA	101891445	101905321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_101891556_101903196_101903326_101903947_101904105_101904427
82437	chr14	+	1217	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-182	-699	-182	699	mono-exon	FALSE	NA	NA	NA	NA	NA	1	81	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATATTTTACAGTG	NA	False	NA	NA	False	NA	NA	NA	13669255	13670472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
82438	chr7	+	916	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-262	-780	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	23.4810561943027	3	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	NA	False	NA	NA	NA	43362560	43376178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370791_43370961_43373178_43373316_43375974
82439	chr13	+	3427	8	NNC	ENSMUSG00000113211.2	novel	3270	8	NA	NA	4	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3.69776545872708	20	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTATAATCATGTATT	NA	False	NA	NA	False	NA	NA	NA	52250780	52278202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192_52276931_52277083
82440	chr3	+	3502	22	ISM	ENSMUSG00000027939.12	ENSMUST00000029548.9	5681	40	28203	21949	28201	-21949	internal_fragment	TRUE	canonical	0	0	junction_1	1.67954210367128	16	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAGAGGCCTCAGAAAA	NA	False	NA	NA	False	NA	NA	NA	90039641	90097375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_90039734_90041869_90042011_90043355_90043494_90044152_90044309_90051465_90051665_90058409_90058556_90061775_90061998_90067136_90067311_90075040_90075234_90076600_90076690_90077296_90077402_90077865_90077968_90079355_90079485_90081636_90081765_90083144_90083278_90087456_90087520_90088677_90088858_90089189_90089271_90089786_90089919_90092731_90092891_90093338_90093431_90096727
82441	chr2	-	2935	10	Antisense	novelGene_ENSMUSG00000006494.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAACGAGGTCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	71732330	71705785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_71705891_71710381_71710455_71713766_71713952_71714186_71714274_71716322_71716403_71717724_71717801_71719237_71719337_71726030_71726141_71727987_71728103_71730325
82442	chr11	+	4050	26	NIC	ENSMUSG00000020716.17	novel	9217	57	NA	NA	5791	-4106	combination_of_known_junctions	FALSE	canonical	1	2	junction_8	4.3752028524401	17	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTTGTGTAAGTATC	4888	False	NA	NA	False	NA	NA	NA	79344769	79456835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_79344791_79344924_79345029_79349596_79349733_79359542_79359702_79360598_79360697_79362260_79362408_79364154_79364302_79366598_79366710_79426428_79426862_79427618_79427960_79431155_79431359_79436179_79436374_79437097_79437239_79437796_79438077_79438493_79438709_79439299_79439362_79439499_79439615_79440233_79440336_79441819_79441961_79444696_79444824_79446306_79446439_79447524_79447661_79450230_79450389_79455649_79455773_79456243_79456378_79456745
82443	chr1	-	1376	8	ISM	ENSMUSG00000057363.13	ENSMUST00000076997.13	1921	15	52884	25	52159	-25	3prime_fragment	FALSE	canonical	3	189	junction_2	14.869500355302	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATCAGACATGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	43814017	43788696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976
82444	chr6	+	5268	2	ISM	ENSMUSG00000040102.11	ENSMUST00000036003.8	6267	3	10187	10	-3748	-10	3prime_fragment	FALSE	canonical	3	50	junction_1	0	53	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAATCAGCTTTTGATGTG	NA	False	NA	NA	False	NA	NA	NA	147003063	147014266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_147003258_147009192
82445	chr12	+	1754	2	Intergenic	novelGene_4461	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	0	37	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTGCCTTGGTTATGGT	NA	False	NA	NA	False	NA	NA	NA	105043741	105082787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_105043885_105081176
82446	chr14	+	1669	1	Antisense	novelGene_ENSMUSG00000034731.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTGTCAGCGGGAACTG	NA	False	NA	NA	False	NA	NA	NA	78803719	78805388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_78803700_78805400
82447	chr11	-	1767	8	FSM	ENSMUSG00000039450.12	ENSMUST00000026144.5	892	8	0	-875	0	875	multi-exon	FALSE	canonical	3	81	junction_3	11.7438650940369	375	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCAAACTTCCTGAAAACAA	9984	False	NA	NA	False	NA	NA	NA	120618107	120615349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
82448	chr5	+	1911	9	FSM	ENSMUSG00000025858.13	ENSMUST00000026976.12	2107	9	194	2	148	-2	multi-exon	FALSE	canonical	3	1098	junction_8	59.685503893324	294	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTGCAGTAGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	139238272	139255804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
82449	chrX	-	3945	9	FSM	ENSMUSG00000034551.13	ENSMUST00000038472.7	9385	9	-38	5478	-38	-5478	multi-exon	FALSE	canonical	1	2	junction_8	2.9474565306379	9	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGATGGCAGATGTGCCCC	NA	False	NA	NA	False	NA	NA	NA	110606814	110485107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_110487096_110492491_110492615_110498891_110498976_110502657_110502738_110510314_110510523_110531997_110532145_110559533_110559588_110569330_110570441_110606663
82450	chr13	-	4193	17	NNC	ENSMUSG00000014850.16	novel	3946	24	NA	NA	1548	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	29.1137317257682	4	114	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAATATGGAATGAATAC	3678	False	NA	NA	False	NA	NA	NA	92480338	92348410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372240_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410627_92411233_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753
82451	chr9	+	1160	6	NNC	ENSMUSG00000044664.8	novel	1584	5	NA	NA	-908	302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5.49181208709839	17	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	1802	False	NA	NA	False	NA	NA	NA	110626325	110633124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110626360_110626505_110626566_110627080_110627477_110627779_110627848_110628225_110628354_110632650
82452	chr3	-	3760	2	Antisense	novelGene_ENSMUSG00000033386.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	89	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGTCTTTTTCTTGAT	NA	False	NA	NA	False	NA	NA	NA	116695886	116686761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_116690465_116695829
82453	chr3	-	1409	9	NNC	ENSMUSG00000086718.2	novel	545	2	NA	NA	-472	3231	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	28	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAACTCCCTCCGGTGTG	4786	False	NA	NA	False	NA	NA	NA	89090072	89084830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89084964_89085317_89085375_89086402_89086522_89086621_89086744_89087556_89087688_89088035_89088195_89088480_89088582_89089230_89089350_89089604
82454	chr5	-	4092	13	FSM	ENSMUSG00000029403.15	ENSMUST00000113143.8	2513	13	53	-1632	29	-98	multi-exon	FALSE	canonical	0	0	junction_1	2.22984802670994	14	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTAACTAAGCACGATATA	NA	False	NA	NA	False	NA	NA	NA	92190502	92154030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92155994_92164980_92165088_92165240_92165365_92167237_92167332_92167876_92168173_92169961_92170092_92172794_92172884_92178841_92178988_92180982_92181096_92181437_92181617_92185026_92185222_92187096_92187296_92190045
82455	chr12	-	1027	8	NNC	ENSMUSG00000050545.11	novel	2851	7	NA	NA	84	748	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	5.65324541068839	15	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTACCATGTGGGTGCT	NA	False	NA	NA	False	NA	NA	NA	4819148	4797158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4797224_4798020_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
82456	chr17	+	912	6	NNC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	68	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	545.689508786819	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGTACACGGAGAAATA	NA	False	NA	NA	False	NA	NA	NA	21180819	21186133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21180902_21181214_21181286_21181894_21182002_21182835_21182979_21185500_21185593_21185716
82457	chr9	-	6087	6	NNC	ENSMUSG00000035164.9	novel	6764	6	NA	NA	-287	-21	at_least_one_novel_splicesite	TRUE	canonical	2	8	junction_4	2.0976176963403	17	42	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATATATTTATAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	52080159	52023305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_52028103_52028838_52028946_52031456_52031692_52037862_52038003_52054974_52055727_52080103
82458	chr11	+	1642	1	Intergenic	novelGene_2271	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTCCCATTTTCCTGG	2	True	NA	NA	False	NA	NA	NA	51884012	51885654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_51884000_51885700
82459	chr2	+	3224	1	NIC	ENSMUSG00000019188.17	novel	5204	12	NA	NA	-8417	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	11	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTCTTTCCTGGTTGTCA	7083	False	NA	NA	False	NA	NA	NA	152525341	152528565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152525300_152528600
82460	chr14	-	2426	2	FSM	ENSMUSG00000046352.8	ENSMUST00000055698.8	2406	2	-40	20	-40	-20	multi-exon	FALSE	canonical	3	13	junction_1	0	47	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACCAAACTCTAACGTGA	NA	False	NA	NA	False	NA	NA	NA	57342199	57336076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_57338229_57341925
82461	chr1	-	3153	8	Fusion	ENSMUSG00000026211.19_ENSMUSG00000032997.17	novel	3065	5	NA	NA	87	-18	multi-exon	FALSE	canonical	0	0	junction_4	50.1589310825793	64	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAACTGGTTAAGTGTAG	NA	False	NA	NA	False	NA	NA	NA	75464635	75451237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_75452871_75453203_75453384_75453888_75454463_75454913_75455057_75463283_75463554_75463866_75463972_75464272_75464435_75464549
82462	chr6	-	3680	2	NIC	ENSMUSG00000063884.7	novel	545	7	NA	NA	1047	298	intron_retention	FALSE	canonical	3	1005	junction_1	0	12	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCACCCCCAGACAAGCC	4127	False	NA	NA	False	NA	NA	NA	71884655	71879372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71880479_71882081
82463	chr10	-	1514	1	Antisense	novelGene_ENSMUSG00000049764.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAGTATGATAGGCAGGA	NA	False	NA	NA	False	NA	NA	NA	75878645	75877131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_75877100_75878600
82464	chr13	+	2988	2	Intergenic	novelGene_1543	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	55	54	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAAGGTTCTGCTGGCAG	7629	False	NA	NA	False	NA	NA	NA	113825802	113853570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113828640_113853419
82465	chr10	+	2000	1	NIC	ENSMUSG00000020064.10	novel	3898	25	NA	NA	-2502	784	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	3	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCATTATTACCTCTCTA	NA	False	NA	NA	False	NA	NA	NA	63123780	63125780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_63123800_63125800
82466	chr5	+	6124	37	NNC	ENSMUSG00000042744.17	novel	15482	76	NA	NA	-1492	-19786	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_6	3.50253435580299	15	32	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGACCACCCCAAATCTCA	NA	False	NA	NA	False	NA	NA	NA	121442300	121486854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121442515_121443734_121443928_121444063_121444169_121445004_121445094_121445409_121445586_121446312_121446449_121446540_121446698_121446792_121446960_121448603_121448751_121449685_121449871_121451936_121452091_121452930_121453212_121453379_121453570_121455264_121455347_121456625_121456829_121458027_121458164_121459460_121459644_121460254_121460420_121460698_121460869_121461980_121462097_121463253_121463358_121466147_121466310_121466425_121466575_121467127_121467208_121467520_121467685_121469738_121469977_121470984_121471122_121471485_121471613_121472399_121472538_121474652_121474790_121477487_121477649_121479935_121480118_121480712_121480919_121481155_121481287_121481541_121481748_121482745_121482926_121486481
82467	chr17	-	2597	1	Genic_Genomic	ENSMUSG00000097379.3	novel	NA	NA	NA	NA	20730	1276	mono-exon	FALSE	NA	NA	NA	NA	NA	2	60	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTTCTCTGTGTAGCCCT	NA	False	NA	NA	False	NA	NA	NA	17611525	17608928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_17608900_17611500
82468	chr18	+	1992	6	FSM	ENSMUSG00000034006.18	ENSMUST00000091798.10	1989	6	-16	13	2	-1	multi-exon	FALSE	canonical	3	12	junction_3	14.1279864099595	80	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAACATGCTTCATGTGGT	NA	False	NA	NA	False	NA	NA	NA	80299504	80335926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
82469	chr11	+	2723	8	Antisense	novelGene_ENSMUSG00000020413.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	106	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCCCTCCCTGAGCGTC	NA	False	NA	NA	False	NA	NA	NA	8943142	8961152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_8944967_8946774_8946933_8948636_8948757_8950076_8950180_8955991_8956059_8957486_8957602_8960243_8960412_8960984
82470	chr16	-	2677	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	10	-836	10	836	multi-exon	FALSE	canonical	3	334	junction_1	8.5	150	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTTAAGAAGTACCCT	NA	False	NA	NA	False	NA	NA	NA	4698169	4691805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_4693734_4694225_4694286_4697480
82471	chr13	-	3256	7	NIC	ENSMUSG00000021432.16	novel	802	9	NA	NA	4542	-63	intron_retention	FALSE	canonical	3	22	junction_6	13.3790881602597	7	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTTAAATAAAATTATCCT	NA	False	NA	NA	False	NA	NA	NA	39139914	39116178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139796
82472	chr8	+	2823	6	ISM	ENSMUSG00000031749.13	ENSMUST00000034197.5	4396	7	37616	609	16634	-609	3prime_fragment	FALSE	canonical	3	80	junction_1	7.93473376995095	52	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACTCATCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	111684169	111698503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111684683_111688800_111688995_111694048_111694229_111695819_111695866_111696175_111696296_111696733
82473	chr7	-	2276	7	NNC	ENSMUSG00000030708.15	novel	2592	8	NA	NA	53	-6	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	22.1240191245222	110	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCATGTTACTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	100160935	100150928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_100152518_100153122_100153200_100153713_100153828_100155288_100155403_100156582_100156741_100159901_100160064_100160873
82474	chr7	-	2460	1	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	59	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCAGCACGCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	46497726	46495266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46495300_46497700
82475	chr19	+	1616	15	Antisense	novelGene_ENSMUSG00000025006.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAGCACACAAAACATT	NA	False	NA	NA	False	NA	NA	NA	40313190	40439844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40313277_40315893_40316067_40325429_40325482_40338343_40338460_40340722_40340851_40340961_40341013_40351647_40351710_40353437_40353624_40361906_40362061_40365087_40365254_40370973_40371078_40381831_40381961_40386985_40387058_40390704_40390767_40439769
82476	chr7	+	2577	1	Antisense	novelGene_ENSMUSG00000066568.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTAAAACGTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	34048082	34050659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_34048100_34050700
82477	chr2	+	3926	1	NIC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	44	-5091	mono-exon	FALSE	NA	NA	NA	NA	NA	5	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACCCCAAAGCAACAAC	8688	False	NA	NA	False	NA	NA	NA	61542178	61546104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_61542200_61546100
82478	chr13	-	1477	2	NIC	ENSMUSG00000015672.5	novel	1174	3	NA	NA	-19	60	intron_retention	FALSE	canonical	3	41	junction_1	0	40	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATGTAAAGGCTCAATG	NA	False	NA	NA	False	NA	NA	NA	14787631	14784897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_14786190_14787446
82479	chr8	-	1069	3	FSM	ENSMUSG00000031834.16	ENSMUST00000146707.2	746	3	132	-455	132	-9	multi-exon	FALSE	canonical	3	190	junction_1	3.5	55	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGCTGAGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	71222176	71220828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71221542_71221705_71221877_71221991
82481	chr11	+	2124	8	NNC	ENSMUSG00000045007.10	novel	1754	11	NA	NA	7	0	intron_retention	FALSE	canonical	0	0	junction_2	101.688399595258	9	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCTTTGTTTGTGACT	1658	False	NA	NA	False	NA	NA	NA	101046739	101052613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101046995_101047273_101047749_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101051223_101051619_101052015_101052230
82482	chr12	-	2050	3	FSM	ENSMUSG00000085622.10	ENSMUST00000136690.3	1063	3	219	-1206	-17	1206	multi-exon	FALSE	canonical	3	10	junction_2	2	77	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTTGTTGTTGGTTTTA	NA	False	NA	NA	False	NA	NA	NA	71062387	71055362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_71057254_71061229_71061282_71062280
82483	chr17	-	2514	4	Antisense	novelGene_ENSMUSG00000024462.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCGGAGGGAGGAAGGAGG	NA	False	NA	NA	False	NA	NA	NA	37361270	37356911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_37357180_37357584_37357667_37358343_37358548_37359310
82484	chr11	-	5546	32	NNC	ENSMUSG00000047126.18	novel	6519	32	NA	NA	-60	-35	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	215.186693862331	1	115	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTGGGCTTTTTTCTCC	NA	False	NA	NA	False	NA	NA	NA	86648451	86586177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596925_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
82485	chr19	+	3841	9	NNC	ENSMUSG00000024805.17	novel	430	5	NA	NA	333	2195	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	38.6328875441637	67	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTAATATGCCACATTGT	NA	False	NA	NA	False	NA	NA	NA	36387480	36435799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_36387711_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
82486	chr10	+	2626	3	ISM	ENSMUSG00000064030.16	ENSMUST00000218218.2	1143	4	231	2	231	-1	3prime_fragment	FALSE	canonical	3	60	junction_1	133.5	6	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCAGGCTTTGGCT	NA	False	NA	NA	False	NA	NA	NA	128584627	128602431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_128586207_128601015_128601110_128601478
82487	chr12	+	3523	1	Antisense	novelGene_ENSMUSG00000105428.3_AS_novelGene_ENSMUSG00000100306.2_AS_novelGene_ENSMUSG00002076596.1_AS_novelGene_ENSMUSG00000079036.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGCACTGTTTTACCCA	NA	False	NA	NA	False	NA	NA	NA	87481739	87485262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_87481700_87485300
82488	chr17	+	1816	2	ISM	ENSMUSG00000041429.4	ENSMUST00000234260.2	968	3	-5	-284	-3	284	intron_retention	FALSE	canonical	3	202	junction_1	0	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGACCCACACCATCTTT	903	False	NA	NA	False	NA	NA	NA	24851650	24854538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24851829_24852900
82489	chr7	+	1066	10	FSM	ENSMUSG00000053964.18	ENSMUST00000066723.15	1384	10	309	9	7	-2	multi-exon	FALSE	canonical	2	5	junction_3	2.77999911182151	21	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGTCTTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	28533587	28541124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28533652_28533872_28533962_28535251_28535457_28537040_28537182_28539686_28539720_28539838_28539878_28540005_28540036_28540288_28540378_28540569_28540733_28540911
82490	chr14	+	1114	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-182	687	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTAACAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	13669255	13670460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669563_13669653
82491	chr19	-	1437	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-16	8	intron_retention	FALSE	canonical	3	822	junction_6	67.1501220318243	12	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTCTTTTCATTTGT	NA	False	NA	NA	False	NA	NA	NA	41921753	41911996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41912528_41913149_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
82492	chr1	-	3004	15	ISM	ENSMUSG00000026565.19	ENSMUST00000111429.11	2679	17	-20	3687	0	783	5prime_fragment	FALSE	canonical	0	0	junction_14	7.3335265899087	39	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCCTACTCTTGGCCCA	9694	False	NA	NA	False	NA	NA	NA	165830198	165706712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165773470_165773572_165830130
82493	chr14	-	3924	11	ISM	ENSMUSG00000037697.20	ENSMUST00000129599.8	2802	12	2414	-1536	10	-12	3prime_fragment	TRUE	canonical	3	102	junction_6	8.17557337438788	44	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCCCTGTGTCCATGCT	NA	False	NA	NA	False	NA	NA	NA	45858233	45830642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_45833122_45836558_45836643_45839021_45839214_45840095_45840349_45842509_45842660_45846394_45846471_45847948_45848212_45851619_45851727_45853986_45854094_45856725_45856874_45858168
82494	chr5	+	1354	5	FSM	ENSMUSG00000013622.16	ENSMUST00000201887.4	1696	5	346	-4	8	-2	multi-exon	FALSE	canonical	3	250	junction_4	26.2202212042538	178	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGCCGTACCTGTGCG	940	False	NA	NA	False	NA	NA	NA	31206010	31211965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_31206101_31206805_31206925_31209540_31210229_31211304_31211403_31211606
82495	chr1	+	729	2	ISM	ENSMUSG00000073652.11	ENSMUST00000097699.3	826	3	528	-294	26	294	3prime_fragment	FALSE	canonical	3	20	junction_1	0	48	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGATCTAAGCTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	71692523	71696910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_71692546_71696203
82496	chr4	-	4069	10	NNC	ENSMUSG00000028549.18	novel	2806	9	NA	NA	-2464	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	75.7570841734892	1059	60	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCCCTTCCAGATATTTTT	NA	False	NA	NA	False	NA	NA	NA	99719887	99654150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319_99718938_99719626
82497	chrX	-	2113	8	NNC	ENSMUSG00000036109.18	novel	2243	8	NA	NA	180	-4	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	8.22638859936455	60	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACGGAGAGTAGCCATTA	NA	False	NA	NA	False	NA	NA	NA	50294529	50208960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50253294_50253542_50294438
82498	chr16	-	1514	9	NNC	ENSMUSG00000003528.16	novel	1666	9	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_8	623.222021032633	629	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTCCTGTCCATCCCTT	NA	False	NA	NA	False	NA	NA	NA	17745751	17743088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745667
82499	chr10	-	4337	22	FSM	ENSMUSG00000020121.16	ENSMUST00000081688.13	7787	22	121	3329	114	920	multi-exon	FALSE	canonical	3	28	junction_11	7.39093027569169	30	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTGTTTGTGTTTGCC	NA	False	NA	NA	False	NA	NA	NA	121883099	121620224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_121621681_121628090_121628431_121628559_121628695_121630511_121630693_121636729_121636810_121640720_121640946_121643765_121643872_121658941_121659077_121661320_121661399_121661538_121661600_121665131_121665235_121667789_121667818_121675934_121676020_121676669_121676868_121689553_121689656_121691209_121691432_121705621_121705751_121706232_121706416_121732587_121732651_121761720_121761884_121767218_121767415_121883031
82500	chr14	+	1779	8	NIC	ENSMUSG00000021906.15	novel	2376	8	NA	NA	-16	-4	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	74.5727969223116	14	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCTTCATGTTTAATGTT	NA	False	NA	NA	False	NA	NA	NA	31807817	31825155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821490_31821589_31822942_31823052_31824213
82501	chr3	-	5227	6	NIC	ENSMUSG00000050931.8	novel	5801	6	NA	NA	-25	-327	combination_of_known_junctions	FALSE	canonical	2	4	junction_5	2.0591260281974	18	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAGAGAAGAAACTA	NA	False	NA	NA	False	NA	NA	NA	131196265	131112960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_131116960_131118587_131118755_131123971_131124126_131129813_131129932_131135417_131136110_131196168
82502	chr8	+	3567	1	ISM	ENSMUSG00000031441.16	ENSMUST00000033818.10	7549	30	108080	68	3529	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	36	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAATGTCGGACTGAGA	NA	False	NA	NA	False	NA	NA	NA	12915093	12918660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_12915100_12918700
82503	chr19	-	2866	1	Antisense	novelGene_ENSMUSG00000035372.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCGAAACCCAGTTAGCTC	7478	False	NA	NA	False	NA	NA	NA	3761223	3758357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_3758400_3761200
82504	chr8	+	3349	4	NIC	ENSMUSG00000097393.9	novel	3677	10	NA	NA	-26716	619	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3.55902608401044	18	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCACATACTGGAGAAA	NA	False	NA	NA	False	NA	NA	NA	109949781	109980890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_109949812_109963661_109963759_109976488_109976556_109977735
82505	chr12	-	3875	2	ISM	ENSMUSG00000019256.18	ENSMUST00000116436.9	5548	11	30149	29	21890	-29	3prime_fragment	FALSE	canonical	3	52	junction_1	0	51	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGATAATAAACTAACCACC	NA	False	NA	NA	False	NA	NA	NA	35554888	35548001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_35550700_35553711
82506	chr4	+	2298	6	ISM	ENSMUSG00000078532.10	ENSMUST00000105993.4	1202	7	34900	-1482	18851	1466	3prime_fragment	FALSE	canonical	3	69	junction_1	13.9570770578943	206	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTATCTGTCTTGCCCT	NA	False	NA	NA	False	NA	NA	NA	130332096	130341110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_130332194_130333903_130333985_130337200_130337399_130338581_130338643_130339094_130339177_130339331
82507	chr17	-	2553	10	ISM	ENSMUSG00000024207.9	ENSMUST00000043062.5	2609	15	12089	0	12089	0	3prime_fragment	TRUE	canonical	1	2	junction_3	1.98761597999981	31	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTTGAGTCTTCATTCC	3101	False	NA	NA	False	NA	NA	NA	57169358	57150102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_57150378_57152403_57152514_57153092_57153340_57153521_57153662_57154610_57154829_57156714_57156949_57157034_57157217_57160736_57160914_57163878_57164029_57168538
82508	chr7	+	2100	5	FSM	ENSMUSG00000055150.16	ENSMUST00000207347.2	3883	5	42	1741	-10	60	multi-exon	FALSE	canonical	2	8	junction_1	5.71729831301464	48	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTGACTGTATTAAGTTT	2996	False	NA	NA	False	NA	NA	NA	6366320	6382967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_6366347_6374304_6374396_6376125_6376253_6378517_6378614_6381207
82509	chr11	-	2060	1	Antisense	novelGene_ENSMUSG00000017548.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGGCAGAGGCAGGCAGA	NA	False	NA	NA	False	NA	NA	NA	79905353	79903293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_79903300_79905400
82510	chr5	+	1949	11	NIC	ENSMUSG00000056367.15	novel	1712	12	NA	NA	-12	-6	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	37.7095478625772	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTATAACTGTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	25964982	26055680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
82511	chr8	+	2040	2	Antisense	novelGene_ENSMUSG00000063049.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTAGTCCTGCACGTAGCA	NA	False	NA	NA	False	NA	NA	NA	48120408	48127617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_48122372_48127540
82512	chr19	+	2724	11	FSM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	534	2	534	-2	multi-exon	FALSE	canonical	3	160	junction_3	39.3161544406367	57	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTATTGTACAAATTGAG	NA	False	NA	NA	False	NA	NA	NA	47056718	47071916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_47056766_47059419_47059658_47063251_47063568_47064174_47064339_47064435_47064572_47065712_47065834_47067206_47067337_47068979_47069145_47070247_47070426_47070582_47070761_47070865
82513	chr3	+	2418	3	FSM	ENSMUSG00000027806.10	ENSMUST00000199164.2	4659	3	2353	-112	-411	112	multi-exon	FALSE	canonical	3	95	junction_1	10.5	68	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGTAAAATAATTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	58324493	58369253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_58325035_58366751_58366804_58367428
82514	chr4	+	2636	14	ISM	ENSMUSG00000028641.17	ENSMUST00000081606.7	2820	15	1449	2	-63	-1	3prime_fragment	FALSE	canonical	3	347	junction_4	39.4039916279178	102	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTATGTGTGTGGTTTGT	NA	False	NA	NA	False	NA	NA	NA	119092477	119106168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_119092596_119093973_119094164_119095061_119095194_119095842_119095983_119098313_119098404_119098678_119098732_119098879_119099002_119101218_119101347_119101581_119101678_119102153_119102305_119103831_119103950_119104327_119104404_119104641_119104783_119105087
82515	chr2	+	3702	1	ISM	ENSMUSG00000027519.11	ENSMUST00000029024.10	7155	7	43875	7	43779	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	24	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATTTCTCTGTGGCATT	NA	False	NA	NA	False	NA	NA	NA	173545427	173549129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_173545400_173549100
82516	chr2	-	2222	1	NIC	ENSMUSG00000072980.4	novel	1778	5	NA	NA	4	-6273	mono-exon	FALSE	NA	NA	NA	NA	NA	19	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTAAAGATTTATT	7484	False	NA	NA	False	NA	NA	NA	119448946	119446724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_119446700_119448900
82517	chr7	-	2866	2	ISM	ENSMUSG00000055978.6	ENSMUST00000210620.2	606	3	10739	-2398	10663	-4	3prime_fragment	FALSE	canonical	0	0	junction_1	0	13	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTTCATGGTTTTTGTT	3664	False	NA	NA	False	NA	NA	NA	45305028	45298018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45300773_45304916
82518	chrM	-	984	3	Antisense	novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCAAAAGGTACAAGGTTT	14	True	NA	NA	False	NA	NA	NA	2360	1282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1386_1429_1525_1574
82519	chr1	+	1074	13	NNC	ENSMUSG00000026414.14	novel	1094	14	NA	NA	-3	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.17960354715414	50	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCAACACACTGCACATAT	790	False	NA	NA	False	NA	NA	NA	135768609	135779984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_135768655_135771515_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778448_135778559_135779089_135779181_135779433_135779475_135779764
82520	chr13	-	1503	6	NNC	ENSMUSG00000032745.19	novel	1940	11	NA	NA	12273	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	598.983672565455	1	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAAAGCTTCTGTCTTAA	NA	False	NA	NA	False	NA	NA	NA	111577643	111562698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_111563186_111570081_111570185_111572962_111573119_111574490_111574659_111575637_111575779_111577195
82521	chr19	-	1733	10	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19192	-3	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_9	18.8325958557674	131	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAAGTCTTCCAGCCTCT	2499	False	NA	NA	False	NA	NA	NA	42295585	42271476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
82522	chr11	-	1859	13	ISM	ENSMUSG00000018476.8	ENSMUST00000094077.5	6654	23	9304	1317	-156	-1317	3prime_fragment	FALSE	canonical	3	11	junction_5	5.70270403697521	5	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGACGCCCCGCTCGCCC	NA	False	NA	NA	False	NA	NA	NA	69295197	69290650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69290676_69290765_69290937_69291021_69291149_69291532_69291675_69291818_69292007_69292088_69292204_69292340_69292490_69292584_69292657_69292742_69292808_69292901_69293108_69294403_69294510_69294615_69294743_69294831
82523	chr19	+	2267	13	NIC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	81	-2	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	300.802676184904	358	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGAGTCTTCCATGTGTG	NA	False	NA	NA	False	NA	NA	NA	7244770	7252587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_7244790_7246215_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
82525	chr13	+	2645	4	NIC	ENSMUSG00000097709.9	novel	2568	4	NA	NA	-4	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	13.1993265821489	50	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCTACTAAGTTATGGACA	NA	False	NA	NA	False	NA	NA	NA	3528238	3544391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_3528391_3529908_3530002_3535030_3535221_3542181
82526	chr9	+	3957	9	Antisense	novelGene_ENSMUSG00000035498.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCTGCCCCGCCGCTCAC	1733	False	NA	NA	False	NA	NA	NA	123001209	123045070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_123002991_123004798_123004887_123006754_123007119_123009049_123009435_123011233_123011452_123012521_123012890_123014116_123014483_123018986_123019196_123044892
82527	chr5	-	2139	5	NNC	ENSMUSG00000044968.17	novel	3954	5	NA	NA	17514	199	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	51.831457629513	115	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAATTTTAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	21888878	21867699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_21868135_21870143_21870361_21875486_21875602_21880452_21881100_21888153
82528	chr13	-	2608	16	Antisense	novelGene_ENSMUSG00000114388.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	24	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCGTGAATGCACTCTTCA	NA	False	NA	NA	False	NA	NA	NA	41332504	41299326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_41299386_41299503_41300148_41302267_41302325_41302407_41302490_41303953_41304002_41306164_41306311_41306906_41306957_41308994_41309119_41316543_41316625_41316770_41316838_41324944_41325026_41326123_41326222_41327671_41327771_41327870_41327936_41330360_41330418_41331654
82529	chr12	+	1714	10	FSM	ENSMUSG00000020669.16	ENSMUST00000020997.15	1750	10	15	21	-9	-10	multi-exon	FALSE	canonical	3	40	junction_1	6.36153564813317	148	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAAGTTAACATGCAGCTA	8054	False	NA	NA	False	NA	NA	NA	30961681	31010140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_30962227_30972233_30972345_30974762_30974877_30976808_30976874_30989572_30989686_30990289_30990419_30991965_30992129_30992788_30992868_31008846_31008904_31009802
82530	chr3	+	713	7	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	0	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1729.15682728124	13	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGATTAGGGGCACTTAC	3590	False	NA	NA	False	NA	NA	NA	88486947	88495670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495348_88495604
82531	chr9	-	1645	6	FSM	ENSMUSG00000040813.17	ENSMUST00000163441.8	1896	6	245	6	104	0	multi-exon	TRUE	canonical	3	46	junction_5	161.744242555956	46	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	8217	False	NA	NA	False	NA	NA	NA	106562777	106535950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562442
82532	chr19	-	2048	8	NNC	ENSMUSG00000024958.14	novel	1729	8	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	9.66584561373558	62	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTGTCACTCGTCT	6526	False	NA	NA	False	NA	NA	NA	6918848	6915437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850_6918581_6918664
82534	chr12	+	3521	5	Antisense	novelGene_ENSMUSG00000112977.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	35	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGGTTTTTTTGCTCC	5509	False	NA	NA	False	NA	NA	NA	109468079	109490093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_109470114_109472761_109472866_109480759_109480854_109482537_109482666_109488932
82535	chr8	+	2213	6	ISM	ENSMUSG00000041308.7	ENSMUST00000212524.2	9945	7	45423	7113	45024	-579	3prime_fragment	FALSE	canonical	3	100	junction_1	12.5123938556936	17	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCACAGCTCCCGAATC	NA	False	NA	NA	False	NA	NA	NA	107707804	107739233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107707972_107718027_107718239_107723697_107723841_107728141_107728339_107736412_107736598_107737923
82536	chr16	-	3516	16	Antisense	novelGene_ENSMUSG00000022780.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	18	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTCCTCTTCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	31717298	31697706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_31697791_31698938_31699094_31700683_31700784_31702576_31702760_31703759_31703918_31705016_31705085_31706228_31706416_31706925_31707109_31707693_31707845_31709530_31709628_31710381_31710577_31711300_31711459_31711555_31711630_31713513_31713693_31715242_31715447_31715958
82537	chr12	-	3319	1	Antisense	novelGene_ENSMUSG00000077025.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTTGGGGCAAAAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	109548558	109545239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_109545200_109548600
82538	chr7	+	2021	8	NIC	ENSMUSG00000030401.17	novel	1990	10	NA	NA	3895	-51	intron_retention	FALSE	canonical	3	51	junction_3	12.1520973246496	20	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCTTGAGCTTGGATTTA	NA	False	NA	NA	False	NA	NA	NA	19020454	19030034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_19020505_19020607_19021079_19021171_19021436_19027000_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
82539	chr4	-	1897	4	FSM	ENSMUSG00000040659.4	ENSMUST00000036854.4	2381	4	286	198	286	-198	multi-exon	FALSE	canonical	3	474	junction_2	32.1696889771861	129	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTATGTGTGTGTGGT	4162	False	NA	NA	False	NA	NA	NA	141601945	141585650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141587190_141587858_141587994_141589115_141589264_141601870
82540	chr8	+	3311	26	ISM	ENSMUSG00000031576.17	ENSMUST00000098858.11	3536	27	2192	6	2192	0	3prime_fragment	FALSE	non_canonical	0	0	junction_6	2.40798671092679	53	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGTTCATTGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	26341842	26427961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26341972_26348150_26348213_26349250_26349342_26351106_26351219_26352414_26352491_26355653_26355730_26371324_26371496_26373640_26373733_26375282_26375394_26376733_26376840_26379989_26380073_26381560_26381631_26382016_26382170_26386636_26386750_26387818_26387888_26389763_26389854_26389975_26390074_26395904_26396041_26400877_26400975_26403611_26403837_26408316_26408504_26409611_26409690_26411447_26411588_26422267_26422463_26424432_26424546_26427523
82541	chr1	-	2023	1	NIC	ENSMUSG00000025968.17	novel	1775	12	NA	NA	3503	-285	mono-exon	FALSE	NA	NA	NA	NA	NA	6	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCAAAGCCTACTATATAC	1996	False	NA	NA	False	NA	NA	NA	63212319	63210296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_63210300_63212300
82542	chr10	+	936	5	NIC	ENSMUSG00000025381.4	novel	1383	6	NA	NA	-35	-3	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	1147.94563786793	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAAACTGTGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	128158292	128163053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128158645_128159452_128159569_128161932_128162137_128162445_128162543_128162886
82543	chr8	+	2063	3	NNC	ENSMUSG00000092418.2	novel	423	2	NA	NA	-3238	12792	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGTCCAGGTGTCCTT	6262	False	NA	NA	False	NA	NA	NA	122529915	122546900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_122531845_122533243_122533338_122546860
82544	chr17	+	2525	2	FSM	ENSMUSG00000033855.16	ENSMUST00000137138.2	767	2	9	-1767	-3	-38	multi-exon	FALSE	canonical	0	0	junction_1	0	16	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCCCAAGCATATAGCTT	NA	False	NA	NA	False	NA	NA	NA	88905120	88945024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_88905170_88942548
82545	chr10	-	1748	2	FSM	ENSMUSG00000003344.15	ENSMUST00000147162.2	1876	2	128	0	128	0	multi-exon	FALSE	canonical	3	442	junction_1	0	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGAGTGCTATGTTGTC	NA	False	NA	NA	False	NA	NA	NA	80480338	80478456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80479526_80479659
82546	chr6	-	1323	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	31	-186	10	186	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	1055	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTATGGTTGATTT	NA	False	NA	NA	False	NA	NA	NA	115014806	114981155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
82547	chr12	+	5035	31	NIC	ENSMUSG00000021140.10	novel	12139	36	NA	NA	573	-73	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	11.5902257671425	25	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCAAATAAAGCTGAAATAT	6799	False	NA	NA	False	NA	NA	NA	81965989	82043106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_81966155_81975015_81975149_81980304_81980490_81993704_81993796_81995131_81995190_81996889_81997093_81999561_81999716_82003004_82003038_82005456_82005629_82006767_82006879_82009411_82009504_82010811_82010922_82011199_82011306_82013829_82013923_82018019_82018171_82019987_82020130_82021163_82021342_82022017_82022127_82022570_82022701_82025842_82025902_82027582_82027799_82028665_82028920_82030241_82030473_82033432_82033534_82034666_82034818_82037323_82037555_82038547_82038823_82039800_82040007_82041661_82042105_82042494_82042636_82042795
82548	chr10	-	3051	5	FSM	ENSMUSG00000060181.7	ENSMUST00000079041.7	3489	5	431	7	431	-7	multi-exon	FALSE	canonical	3	51	junction_4	6.41774882649672	24	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAACCATACAGGCTGATA	NA	False	NA	NA	False	NA	NA	NA	117581839	117569590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117572139_117576416_117576500_117576657_117576817_117580789_117580901_117581689
82549	chr11	-	2521	20	ISM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	4207	-2	-841	2	3prime_fragment	FALSE	canonical	3	29	junction_17	7.4342920349514	34	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTTAGTTCATTTACT	NA	False	NA	NA	False	NA	NA	NA	69782158	69772390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689
82551	chr17	+	1977	2	Intergenic	novelGene_4	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCGAAGCGCTCTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	5574779	5577392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_5574943_5575578
82553	chr6	-	2931	5	ISM	ENSMUSG00000071477.11	ENSMUST00000114583.8	3111	6	3434	30	-437	-13	3prime_fragment	FALSE	canonical	3	96	junction_1	18.0623918681884	35	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTTTTAAAAGACGAGT	NA	False	NA	NA	False	NA	NA	NA	48021614	48001151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_48002753_48006056_48006309_48014488_48014603_48018962_48019090_48020777
82554	chr7	+	2506	6	ISM	ENSMUSG00000030795.19	ENSMUST00000128851.8	4909	13	6445	778	-207	-198	internal_fragment	FALSE	canonical	3	1068	junction_1	99.5136171586582	6	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATGGCCCAGGAGGGGG	7629	False	NA	NA	False	NA	NA	NA	127573107	127580423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362
82555	chr11	-	3075	1	ISM	ENSMUSG00000039976.5	ENSMUST00000036113.4	6986	12	82368	12	75845	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	50	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATCACCACACACATGGT	3964	False	NA	NA	False	NA	NA	NA	119036957	119033882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_119033900_119037000
82556	chr13	-	3596	3	FSM	ENSMUSG00000055560.9	ENSMUST00000224496.2	504	3	-10	-3082	0	-1272	multi-exon	FALSE	canonical	3	38	junction_2	2.5	81	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTATTCAGTGCTCAATGG	NA	False	NA	NA	False	NA	NA	NA	67569537	67557930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67561323_67561952_67562080_67569460
82557	chr3	+	2833	1	Intergenic	novelGene_3136	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACAACCCTTGGAACTGG	NA	False	NA	NA	False	NA	NA	NA	68917353	68920186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_68917400_68920200
82558	chr14	+	1034	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-178	692	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGATATTT	NA	False	NA	NA	False	NA	NA	NA	13669259	13670465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669648_13669819
82559	chr17	+	1693	1	Antisense	novelGene_ENSMUSG00000023991.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTTTTAACTGGGAGAGG	NA	False	NA	NA	False	NA	NA	NA	48177035	48178728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_48177000_48178700
82560	chr6	-	4001	2	Intergenic	novelGene_4206	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	16	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAATGGCTACCCCTG	NA	False	NA	NA	False	NA	NA	NA	88670428	88659201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_88663109_88670334
82561	chr1	+	2248	7	NNC	ENSMUSG00000037447.17	novel	563	4	NA	NA	-524	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.92094912738176	57	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGGGTGTACAGCACT	NA	False	NA	NA	False	NA	NA	NA	36354548	36359609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_36354703_36355289_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
82563	chr13	-	2027	2	ISM	ENSMUSG00000015672.5	ENSMUST00000015816.5	658	3	-6	-60	4	60	intron_retention	FALSE	canonical	3	1082	junction_1	0	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATGTAAAGGCTCAATG	NA	False	NA	NA	False	NA	NA	NA	14787606	14784897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_14785326_14786007
82564	chr4	-	1783	6	NIC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-6	30	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	35.7960891718635	116	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATATGTGTATGTATA	NA	False	NA	NA	False	NA	NA	NA	129512879	129508888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
82565	chr3	+	2409	12	NNC	ENSMUSG00000028032.14	novel	2600	12	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	12.3167560395927	154	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	NA	False	NA	NA	NA	131270721	131349432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288989_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
82566	chr19	+	1578	5	NNC	ENSMUSG00000024925.12	novel	1126	4	NA	NA	3	104	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	116.677707810875	1519	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTAACCTTTGCTGCC	5048	False	NA	NA	False	NA	NA	NA	5651903	5657151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5652109_5652220_5652403_5652477_5652598_5652851_5653024_5656252
82567	chr11	+	2879	13	NIC	ENSMUSG00000017639.14	novel	677	3	NA	NA	139	-4033	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	20.8706332758097	2	108	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGGTGTATGGTTCAAGT	NA	False	NA	NA	False	NA	NA	NA	79551526	79584816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_79551683_79571613_79571838_79574166_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
82568	chr11	-	2269	4	ISM	ENSMUSG00000042302.15	ENSMUST00000134293.2	1207	8	-4	83798	-4	1672	5prime_fragment	FALSE	canonical	3	27	junction_2	2.16024689946929	6	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAATCAGTATGTTCTT	NA	False	NA	NA	False	NA	NA	NA	22235876	22180329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_22182056_22189142_22189239_22197969_22198028_22235487
82569	chr17	+	2372	7	NIC	ENSMUSG00000034729.17	novel	1113	7	NA	NA	1	-51	intron_retention	FALSE	canonical	3	79	junction_1	649.271493461882	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATCTATCGGCCTCTGCC	7149	False	NA	NA	False	NA	NA	NA	47679823	47689552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_47681296_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
82570	chr19	-	2321	1	FSM	ENSMUSG00000074922.2	ENSMUST00000099556.2	855	1	269	-1735	269	1735	mono-exon	FALSE	NA	NA	NA	NA	NA	44	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAACTCTTGACAGTTGCA	NA	False	NA	NA	False	NA	NA	NA	24454451	24452130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_24452100_24454500
82571	chr4	+	1935	10	NNC	ENSMUSG00000041351.17	novel	3168	23	NA	NA	1042	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	41.5344569136411	69	28	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTACCCGGAGTTAAGAAC	NA	False	NA	NA	False	NA	NA	NA	137447224	137457167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137447308_137447604_137447743_137449136_137449269_137452002_137452117_137452860_137452975_137454262_137454387_137454987_137455091_137455570_137455675_137455838_137455880_137456185
82572	chr4	-	1819	13	Antisense	novelGene_ENSMUSG00000041351.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	36	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGAAGTTGCAGTATACG	NA	False	NA	NA	False	NA	NA	NA	137456784	137445293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_137445353_137446182_137446340_137446636_137446709_137447218_137447306_137447602_137447741_137449134_137449268_137452000_137452111_137452858_137452972_137454259_137454384_137454983_137455086_137455590_137455673_137455836_137455876_137456181
82573	chr11	+	1082	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	13	29	13	-1	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	395	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACTACGTAACAAAGGTG	NA	False	NA	NA	False	NA	NA	NA	101518780	101526897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
82574	chr8	+	1917	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	146	0	22	0	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	106	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGATGTGCATTGTCC	NA	False	NA	NA	False	NA	NA	NA	95393373	95401053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
82575	chr17	-	1277	2	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-844	-3804	at_least_one_novel_splicesite	FALSE	canonical	3	186	junction_1	0	76	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAGAAAAAAGGATT	NA	False	NA	NA	False	NA	NA	NA	30846723	30845218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30846170_30846397
82576	chrX	+	3576	1	FSM	ENSMUSG00000047485.7	ENSMUST00000087157.5	1935	1	-540	-1101	-540	1101	mono-exon	FALSE	NA	NA	NA	NA	NA	12	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTCTCTCCTAGATTTGA	NA	False	NA	NA	False	NA	NA	NA	156600890	156604466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_156600900_156604500
82577	chr11	+	609	1	Antisense	novelGene_ENSMUSG00000020935.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAATGGTAGGGCTCGGG	3603	False	NA	NA	False	NA	NA	NA	102884874	102885483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102884900_102885500
82578	chr7	+	1961	2	FSM	ENSMUSG00000047721.9	ENSMUST00000106369.2	642	2	-7	-1312	0	951	multi-exon	FALSE	canonical	3	2580	junction_1	0	246	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACACCTTACTCCTATAG	1141	False	NA	NA	False	NA	NA	NA	126295137	126297181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126295272_126295354
82579	chr6	-	3189	1	ISM	ENSMUSG00000030257.17	ENSMUST00000088373.11	8887	22	226102	5	45773	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	14	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAACATAGTCTGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	112698125	112694936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_112694900_112698100
82580	chr18	-	1524	5	FSM	ENSMUSG00000063889.17	ENSMUST00000142690.2	1256	5	-45	-223	-30	-75	multi-exon	FALSE	canonical	3	31	junction_3	27.3072792493137	133	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCAAAGACTATATTTTC	11	True	NA	NA	False	NA	NA	NA	3337619	3294258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
82581	chr2	-	2367	15	NIC	ENSMUSG00000026970.17	novel	2543	15	NA	NA	311	-46	combination_of_known_junctions	FALSE	canonical	3	25	junction_14	91.0514824095665	35	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTTTTTTTCAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	60793225	60582342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60590102_60590151_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
82582	chr3	-	3143	1	ISM	ENSMUSG00000032913.14	ENSMUST00000046316.11	7099	18	54711	7	4382	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	40	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATGATTCTCTGGTCTTC	NA	False	NA	-8	True	NA	NA	NA	104364445	104361302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104361300_104364400
82583	chr7	+	2306	3	FSM	ENSMUSG00000055407.15	ENSMUST00000107100.3	2335	3	24	5	24	-4	multi-exon	FALSE	canonical	3	44	junction_2	18	103	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCAGTGTCTCTGGCT	NA	False	NA	NA	False	NA	NA	NA	98917576	98986339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_98918521_98964895_98965110_98985191
82584	chr19	-	4724	12	NIC	ENSMUSG00000053617.13	novel	10454	15	NA	NA	12469	1474	combination_of_known_splicesites	TRUE	canonical	0	0	junction_6	1.74867127833376	30	63	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTAACCTCCTGGATCC	NA	False	NA	NA	False	NA	NA	NA	47386329	47253877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_47257376_47258276_47258397_47260446_47260497_47261622_47261958_47266751_47266870_47271459_47271544_47275043_47275158_47302473_47302606_47331878_47331908_47353061_47353154_47361822_47361900_47386254
82585	chr1	-	4325	19	NNC	ENSMUSG00000026482.14	novel	5092	19	NA	NA	0	-579	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	5.05402907357518	14	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCAGATTGTAACAGGGA	NA	False	NA	NA	False	NA	NA	NA	152642056	152393280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_152394948_152397045_152397161_152400395_152400651_152404023_152404211_152407256_152407347_152409256_152409379_152412017_152412051_152413481_152413569_152415687_152415778_152420101_152420187_152424817_152424922_152428171_152428388_152430046_152430172_152433153_152433339_152447348_152447427_152462157_152462367_152499568_152499680_152550610_152550778_152641657
82586	chr2	-	2313	10	FSM	ENSMUSG00000002105.16	ENSMUST00000111436.3	1291	10	48	-1070	4	-13	multi-exon	FALSE	canonical	3	19	junction_7	11.8831761976001	50	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTAGACCGGCTGCCTCT	4349	False	NA	NA	False	NA	NA	NA	90900580	90892148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_90893324_90893408_90893509_90893664_90893798_90894000_90894052_90895059_90895150_90895250_90895353_90895926_90896085_90896357_90896472_90898775_90899085_90900499
82587	chr3	-	2264	3	FSM	ENSMUSG00000028042.16	ENSMUST00000029677.9	3851	3	224	1363	204	-1363	multi-exon	FALSE	canonical	3	27	junction_2	6.5	44	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTCCTGGTTTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	89300445	89286313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89287302_89287650_89288823_89300341
82588	chr1	+	1481	4	NIC	ENSMUSG00000026708.17	novel	1910	5	NA	NA	-18	2	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	52.7909924976685	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTTTCCAATTGAAGTT	NA	False	NA	NA	False	NA	NA	NA	160898501	160913896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_160898927_160902326_160902501_160910477_160911021_160913557
82589	chr14	+	782	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-182	685	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTCTAACAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13669255	13670458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669469_13669889
82590	chr3	+	3472	17	FSM	ENSMUSG00000068856.4_ENSMUSG00000045934.16	ENSMUST00000054356.16	2778	17	14	-708	14	708	multi-exon	FALSE	canonical	2	2	junction_4	1.93245310421754	22	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTAAGATGGCCGCGATC	NA	False	NA	NA	False	NA	NA	NA	96069334	96079742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96069576_96069945_96070037_96070408_96070531_96070784_96070846_96070984_96071128_96071564_96071644_96071749_96071886_96072102_96072191_96072313_96072403_96072487_96072613_96075127_96075195_96075388_96075460_96075914_96076082_96076351_96076526_96077122_96077306_96077668_96077963_96078401
82591	chr5	-	1997	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	-1110	-6	-1110	5	multi-exon	FALSE	canonical	3	320	junction_1	0	1754	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGAATGGCCTCTTTTTC	529	False	NA	NA	False	NA	NA	NA	137501890	137499694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137500342_137500540
82592	chr6	+	6651	2	FSM	ENSMUSG00000092035.9	ENSMUST00000176204.8	6667	2	16	0	16	0	multi-exon	FALSE	canonical	1	2	junction_1	0	27	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCCTGATCATTTCAG	-5	True	NA	NA	False	NA	NA	NA	4747321	4760517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_4747579_4754123
82593	chr4	+	2737	2	ISM	ENSMUSG00000060206.12	ENSMUST00000133895.8	363	3	62485	-2428	-3833	2428	3prime_fragment	FALSE	canonical	3	11	junction_1	0	1	135	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGCCATGAATGTACTCAAC	NA	False	NA	NA	False	NA	NA	NA	55007532	55010742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_55007783_55008255
82594	chr11	-	1593	6	Antisense	novelGene_ENSMUSG00000020300.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATCGGAAACAATGAAGACT	NA	False	NA	NA	False	NA	NA	NA	31882240	31870431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_31870581_31874623_31874714_31875346_31875468_31877640_31877755_31880036_31880219_31881303
82595	chr8	+	3169	3	FSM	ENSMUSG00000039960.6	ENSMUST00000045487.4	3371	3	193	9	193	-9	multi-exon	FALSE	canonical	3	44	junction_2	0.5	29	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACCGAGCTGCTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	124380860	124390614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_124380956_124382230_124382290_124387599
82596	chrX	+	2100	8	NNC	ENSMUSG00000067835.5	novel	2051	12	NA	NA	122507	362	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3.83325938999964	23	20	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCTCTTCCTCTTGACT	NA	False	NA	NA	False	NA	NA	NA	59723840	59851961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_59723918_59789032_59789219_59822590_59822677_59825486_59825710_59843031_59843137_59847242_59847346_59850088_59850175_59850727
82597	chr18	+	2749	17	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-332	-1	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_6	16.5481069536669	536	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATTGGTGATCTTTCTCC	NA	False	NA	NA	False	NA	NA	NA	21194647	21233255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
82598	chr9	+	2013	2	FSM	ENSMUSG00000097604.2	ENSMUST00000181289.2	2169	2	66	90	66	-90	multi-exon	FALSE	canonical	2	3	junction_1	0	50	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCAGTCACTACAGGTA	NA	False	NA	NA	False	NA	NA	NA	57905389	57914644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57905602_57912843
82599	chr17	-	2652	1	Intergenic	novelGene_21	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTAAATCAACTTTACAG	NA	False	NA	NA	False	NA	NA	NA	17141313	17138661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17138700_17141300
82600	chr5	-	2083	3	FSM	ENSMUSG00000043059.17	ENSMUST00000031562.11	2213	3	130	0	130	0	multi-exon	FALSE	canonical	3	184	junction_2	7	54	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCATGTCTCTGCTGAAT	NA	False	NA	NA	False	NA	NA	NA	31359256	31356326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31357492_31357578_31358167_31358926
82601	chr2	-	1778	1	Antisense	novelGene_ENSMUSG00000016921.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTCAAGAATATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	162777896	162776118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162776100_162777900
82602	chr7	-	516	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182048.2	465	4	12	-63	-3	0	multi-exon	FALSE	canonical	3	33	junction_3	332.524017511852	1502	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	4756025	4754790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_4754975_4755059_4755161_4755722_4755880_4755951
82603	chr7	+	1732	11	NNC	ENSMUSG00000023467.19	novel	259	2	NA	NA	0	8	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_10	27.1447969231674	133	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTAGTGTACAAAATAATG	1284	False	NA	NA	False	NA	NA	NA	45165231	45172026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45165379_45165662_45165801_45165939_45166111_45167203_45167392_45168009_45168310_45169154_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646_45171773_45171863
82604	chr19	-	2065	2	Intergenic	novelGene_1242	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAGTCGTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	29661637	29659361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_29661169_29661379
82605	chr19	-	1512	5	FSM	ENSMUSG00000024944.7	ENSMUST00000025893.7	1286	5	-230	4	-230	-1	multi-exon	FALSE	canonical	3	648	junction_1	48.4890451545501	250	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCTGGCTGAGCCATTT	NA	False	NA	NA	False	NA	NA	NA	6191808	6184416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
82606	chr11	-	5035	2	Antisense	novelGene_ENSMUSG00000010554.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCCTCCCGCAGGCAGG	5346	False	NA	NA	False	NA	NA	NA	74719348	74714258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_74714299_74714353
82607	chr2	+	3223	1	Intergenic	novelGene_2728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCCAAAGCCGAACAAGAA	NA	False	NA	NA	False	NA	NA	NA	150172912	150176135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_150172900_150176100
82608	chr13	+	3178	24	Antisense	novelGene_ENSMUSG00000021375.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	78	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAGGCTCACCTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	46924981	46977501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_46925078_46926249_46926423_46927057_46927185_46928878_46928934_46930561_46930692_46932371_46932469_46934100_46934148_46938728_46938877_46939997_46940119_46941530_46941683_46944805_46944983_46947366_46947531_46951821_46951971_46952673_46952812_46954758_46954919_46955993_46956206_46962366_46962536_46962635_46962719_46964164_46964297_46966203_46966339_46967634_46967746_46968684_46968898_46969761_46969874_46977424
82609	chr7	-	1248	10	Antisense	novelGene_ENSMUSG00000035632.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	204	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGCCTCCCCTCCTCTCT	8852	False	NA	NA	False	NA	NA	NA	3656614	3648278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_3648594_3648991_3649065_3653799_3653873_3653977_3654046_3654264_3654342_3654492_3654581_3654804_3654935_3655030_3655128_3656198_3656419_3656507
82610	chrX	+	2330	5	FSM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	-64	-1155	-64	1155	multi-exon	FALSE	canonical	3	14	junction_3	2.69258240356725	292	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATCATTTTCCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	36007247	36042010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36007672_36015785_36016028_36021420_36021594_36039134_36039270_36040654
82611	chr6	+	3010	11	NIC	ENSMUSG00000038346.19	novel	3603	12	NA	NA	-37	2	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	70.3565917309814	70	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGCAGTGAGCTACTGT	NA	False	NA	NA	False	NA	NA	NA	124986070	125014830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124986209_124987343_124987404_125000641_125000713_125000995_125001234_125001467_125001516_125001708_125002046_125002810_125002904_125007760_125007986_125010202_125010282_125012675_125012835_125013268
82612	chr10	-	1777	3	FSM	ENSMUSG00000045867.11	ENSMUST00000053594.7	1661	3	-112	-4	-87	4	multi-exon	FALSE	canonical	3	29	junction_2	28.5	297	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGCGTGTCCATTGTGT	NA	False	NA	NA	False	NA	NA	NA	95160082	95010603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_95011841_95158447_95158752_95159846
82613	chr13	-	2527	5	FSM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	152	9	-138	-9	multi-exon	FALSE	canonical	3	817	junction_1	45.9292934846597	255	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGTCTGTGGTGTTCA	NA	False	NA	NA	False	NA	NA	NA	18118672	18055164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_18057087_18063091_18063267_18067706_18067916_18071537_18071688_18118601
82614	chr2	+	1814	8	NNC	ENSMUSG00000026817.15	novel	2063	7	NA	NA	20	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	124.48571756451	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTTCAGTTATAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	32515469	32525055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32515551_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652_32524270_32524486
82615	chr14	+	2481	16	FSM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	200	0	199	0	multi-exon	FALSE	canonical	3	111	junction_15	21.4813614300605	52	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTGCTTCCTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	13803732	14038581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360_13996423_14026822_14026918_14038054
82616	chr10	-	2636	10	NIC	ENSMUSG00000036099.17	novel	11138	12	NA	NA	0	-1586	combination_of_known_splicesites	FALSE	canonical	2	3	junction_5	17.3717522943938	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTGCTGGGGTTTG	3435	False	NA	NA	False	NA	NA	NA	93871639	93805547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
82617	chr13	-	2044	9	NNC	ENSMUSG00000021557.16	novel	4143	25	NA	NA	3350	-7	intron_retention	FALSE	canonical	2	3	junction_8	9.16429893663449	39	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTGCATTTCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	59625802	59597357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_59598129_59608282_59608444_59609810_59609988_59613798_59613931_59621501_59621632_59622345_59622527_59623473_59623628_59624807_59624953_59625609
82618	chr13	-	1818	4	FSM	ENSMUSG00000021550.7	ENSMUST00000022032.7	3051	4	193	1040	193	-1040	multi-exon	TRUE	canonical	3	402	junction_2	21.2289111041209	60	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCCCAGTCCATGTAGG	NA	False	NA	NA	False	NA	NA	NA	58532846	58528670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_58529824_58530221_58530418_58531963_58532224_58532637
82619	chr13	+	2832	13	FSM	ENSMUSG00000038732.16	ENSMUST00000047311.16	2905	13	49	24	49	-24	multi-exon	FALSE	canonical	1	2	junction_9	4.03026742978125	14	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATGATTCCTCATAAAA	NA	False	NA	NA	False	NA	NA	NA	30320520	30430676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_30320746_30378518_30378665_30379692_30379771_30386307_30386404_30403618_30403675_30406356_30406412_30408365_30408550_30410255_30410449_30415946_30416051_30419672_30419738_30421945_30422079_30425146_30425299_30429331
82620	chr13	+	2121	1	Antisense	novelGene_ENSMUSG00000049625.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGGGGCCTCTCCATAGA	NA	False	NA	NA	False	NA	NA	NA	56322303	56324424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_56322300_56324400
82621	chr4	-	1887	4	ISM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	23	12	0	-11	intron_retention	FALSE	canonical	3	693	junction_3	22.3755819291179	8	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTCCCTCAATTTTGT	11	True	NA	NA	False	NA	NA	NA	43656443	43654240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905
82622	chr12	-	2285	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	176	0	-82	0	multi-exon	FALSE	canonical	3	92	junction_1	7	191	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACGTGCTTGGAATGAT	NA	False	NA	NA	False	NA	NA	NA	44256933	44252341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_44254189_44254869_44255097_44256722
82623	chr19	+	4412	1	FSM	ENSMUSG00000033760.18	ENSMUST00000183332.2	5670	1	133	1125	133	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTAACTGAGTGGC	NA	False	NA	NA	False	NA	NA	NA	4811556	4815968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_4811600_4816000
82624	chr17	+	2500	1	ISM	ENSMUSG00000051390.11	ENSMUST00000053429.11	2612	2	651	4	651	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	52	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTGGCTTCCCAACAC	89	False	NA	NA	False	NA	NA	NA	34135795	34138295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_34135800_34138300
82625	chr2	-	2989	1	Antisense	novelGene_ENSMUSG00000035183.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTGTCATATTGTTCA	NA	False	NA	NA	False	NA	NA	NA	124925883	124922894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_124922900_124925900
82626	chr14	-	372	1	Intergenic	novelGene_516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCGTTATCATTAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	13670478	13670106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_13670100_13670500
82627	chr6	+	2873	16	ISM	ENSMUSG00000035125.11	ENSMUST00000043195.11	4192	17	2180	966	2169	-307	3prime_fragment	FALSE	canonical	3	32	junction_8	9.96973197009606	41	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAATGATGATCCTGTAT	NA	False	NA	NA	False	NA	NA	NA	81902829	81935930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_81902876_81907648_81907874_81909794_81909893_81912886_81913003_81916360_81916548_81918298_81918423_81919909_81919992_81920409_81920523_81921301_81921502_81923443_81923595_81925243_81925363_81926889_81926967_81928700_81928768_81930254_81930402_81933811_81933937_81934934
82628	chr18	-	2699	9	ISM	ENSMUSG00000054008.10	ENSMUST00000169273.2	6070	14	12985	1684	-3332	-1684	3prime_fragment	FALSE	canonical	3	24	junction_2	7.32717544487642	1	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTACCCCAAGCCCCCA	NA	False	NA	NA	False	NA	NA	NA	60833476	60820733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_60822437_60823035_60823139_60824249_60824360_60825000_60825172_60828407_60828583_60830138_60830263_60831510_60831608_60832579_60832763_60833443
82629	chr16	+	958	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	0	-120	0	120	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	1323	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTACTTTCTTTGTACTGTT	NA	False	NA	NA	False	NA	NA	NA	32238519	32248037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
82630	chr10	-	3087	1	Genic_Genomic	ENSMUSG00000097309.3	novel	NA	NA	NA	NA	-2464	-3615	mono-exon	FALSE	NA	NA	NA	NA	NA	7	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCCCAGCACTCGGGAGG	NA	False	NA	NA	False	NA	NA	NA	84460906	84457819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_84457800_84460900
82631	chr4	-	1932	6	NNC	ENSMUSG00000028578.9	novel	2107	6	NA	NA	5	-6	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	95.7091427189691	80	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAATTACAGATATCTTT	NA	False	NA	NA	False	NA	NA	NA	94444998	94388323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_94389654_94409298_94409373_94437355_94437432_94438658_94438744_94439501_94439703_94444832
82634	chr1	-	2532	10	NIC	ENSMUSG00000026309.15	novel	2342	11	NA	NA	-15	-5	intron_retention	FALSE	canonical	3	426	junction_7	37.4633977748883	5	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTAGTTATTTGAGTGAC	NA	False	NA	NA	False	NA	NA	NA	91326437	91303558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91316187_91318328_91318386_91318853_91318920_91326372
82635	chr11	-	1990	3	ISM	ENSMUSG00000020744.14	ENSMUST00000135552.2	826	5	4861	-1260	-59	-2	3prime_fragment	FALSE	canonical	3	142	junction_2	14	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGCTGACTGCAGACCA	5593	False	NA	NA	False	NA	NA	NA	115508790	115505005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_115506418_115507346_115507478_115508343
82636	chr17	+	2221	2	FSM	ENSMUSG00000043445.8	ENSMUST00000053024.8	2627	2	394	12	351	-12	multi-exon	FALSE	canonical	3	1130	junction_1	0	121	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGATGATTAGGTCTGCC	NA	False	NA	NA	False	NA	NA	NA	24689759	24692072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24690124_24690215
82637	chr14	+	1409	11	NNC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	59	428	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	42.0843201204439	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTAGACGTTCTTCTAT	NA	False	NA	NA	False	NA	NA	NA	55909773	55916201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680_55915930_55915975
82638	chr3	-	2072	3	Genic_Genomic	ENSMUSG00000068547.8	novel	3004	14	NA	NA	5957	4807	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGGAAGACAGGTTCAGC	NA	False	NA	NA	False	NA	NA	NA	144674849	144653433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_144653461_144653624_144653829_144673008
82639	chr16	-	1470	7	ISM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	-239	5415	-15	2855	5prime_fragment	FALSE	canonical	3	88	junction_4	10.7341614587364	34	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATATCTTGTTTATTTCAG	NA	False	NA	NA	False	NA	NA	NA	59459769	59438726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
82640	chr1	+	2037	9	NNC	ENSMUSG00000026523.15	novel	1392	10	NA	NA	13382	891	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	1.98431348329844	8	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATTATATATATGTGTG	NA	False	NA	NA	False	NA	NA	NA	175539734	175572343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_175539959_175544844_175544948_175547843_175547948_175552232_175552263_175553954_175554066_175556348_175556564_175559047_175559183_175571111_175571192_175571308
82641	chr7	+	4214	14	Antisense	novelGene_ENSMUSG00000030583.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	13	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCCCGAGTGACTTCCA	6498	False	NA	NA	False	NA	NA	NA	29050134	29217973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_29050237_29053479_29053604_29063592_29063733_29065974_29066227_29070388_29070663_29076918_29077498_29082620_29082779_29085480_29085585_29086577_29086755_29087388_29087577_29096575_29096707_29098751_29100575_29134173_29134256_29217893
82642	chr7	-	1301	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	-9	3	-9	-3	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	2793	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTTTGGTTTATTGT	5723	False	NA	NA	False	NA	NA	NA	33896095	33883926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
82643	chr7	-	2638	15	NNC	ENSMUSG00000003863.19	novel	4565	30	NA	NA	8003	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	22.1309876021134	103	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAGCTTTTGTTCTTAA	7368	False	NA	NA	False	NA	NA	NA	45001534	44988549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44993160_44993228_44996155_44996357_44996847_44996930_44997151_44997246_44997665_44997794_44997885_44998050_44999492_44999716_45001510
82644	chr12	+	1705	7	FSM	ENSMUSG00000021123.13	ENSMUST00000021548.12	1678	7	-39	12	-39	-11	multi-exon	FALSE	canonical	2	3	junction_5	2.5	21	7	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTCTCATTGCCTGGT	336	False	NA	NA	False	NA	NA	NA	79255648	79269427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_79255883_79257614_79257734_79258161_79258318_79259426_79259532_79260317_79260528_79265449_79265640_79268736
82645	chr16	+	1900	8	FSM	ENSMUSG00000022514.15	ENSMUST00000174202.8	2306	8	4	402	0	-402	multi-exon	FALSE	canonical	3	10	junction_5	3.88087934491604	21	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTGAGCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	26400506	26520704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_26400637_26442904_26442970_26495458_26495745_26498852_26499040_26511494_26511661_26513971_26514044_26517576_26517704_26519837
82646	chr11	+	1174	2	ISM	ENSMUSG00000087107.9	ENSMUST00000143673.2	1428	4	900	53	327	-53	3prime_fragment	FALSE	canonical	3	15	junction_1	0	69	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAAAAATAAAGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	83115301	83117377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_83115458_83116359
82647	chr7	+	1805	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-274	-3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	15.8694675399019	231	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTTTTTGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	43362548	43376955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
82648	chr12	+	789	4	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	2	73	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	83.5158002349788	2	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTTGTGCTCTGCATGC	NA	False	NA	NA	False	NA	NA	NA	3285527	3288346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3285863_3287346_3287413_3287590_3287661_3288028
82649	chr17	-	441	4	NNC	ENSMUSG00000015120.16	novel	824	7	NA	NA	7	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2215.98816683563	1	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGATGTCAGTATTTCAA	4754	False	NA	NA	False	NA	NA	NA	25492350	25481204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25481429_25488165_25488250_25488376_25488454_25492294
82650	chr1	-	3241	9	NNC	ENSMUSG00000025978.15	novel	3677	9	NA	NA	-9040	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	3.64005494464026	53	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACAAATATGCCCATGTT	NA	False	NA	NA	False	NA	NA	NA	55254688	55209325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55211242_55224108_55224188_55233402_55233507_55234674_55234797_55243341_55243552_55245494_55245775_55250308_55250421_55253278_55253463_55254454
82651	chr5	-	1877	5	NNC	ENSMUSG00000085271.8	novel	906	5	NA	NA	2	602	intron_retention	FALSE	canonical	2	8	junction_4	1.08972473588517	41	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCCATTTTTTCCTCAT	NA	False	NA	NA	False	NA	NA	NA	111909564	111881547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_111883050_111886992_111887080_111887701_111887776_111895707_111895859_111909501
82652	chr13	-	3900	25	FSM	ENSMUSG00000021549.15	ENSMUST00000109552.3	4563	25	609	54	609	-54	multi-exon	TRUE	canonical	3	186	junction_11	23.7235232534199	85	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTACTAAGGAAGGTATT	NA	False	NA	NA	False	NA	NA	NA	85436539	85362952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_85364307_85364995_85365131_85366300_85366379_85367524_85367614_85369589_85369658_85371576_85371664_85372321_85372438_85373600_85373744_85374652_85374813_85375070_85375244_85376349_85376427_85376726_85376885_85377723_85377802_85378506_85378595_85381707_85381865_85382478_85382600_85386257_85386337_85392306_85392458_85394709_85394763_85398550_85398583_85400544_85400663_85403502_85403574_85404457_85404594_85406436_85406590_85436514
82653	chr10	-	964	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	108	12	108	-12	multi-exon	FALSE	canonical	3	1606	junction_1	82	6520	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTGTTCATCTCTGTG	1361	False	NA	NA	False	NA	NA	NA	71180676	71166321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_71166957_71172043_71172250_71180553
82654	chr10	-	2273	9	Antisense	novelGene_ENSMUSG00000025404.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	49	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCTAAGGCTCATTTGT	6984	False	NA	NA	False	NA	NA	NA	127334986	127319890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127320086_127320372_127320499_127320725_127320889_127321281_127321440_127323644_127323741_127328433_127328606_127330887_127331037_127333029_127333494_127334236
82655	chr7	-	1528	5	NNC	ENSMUSG00000030678.8	novel	2347	5	NA	NA	564	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	321.632068519294	283	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	-6	True	NA	NA	False	NA	NA	NA	126625060	126621305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126621680_126622007_126622341_126623615_126623788_126624047_126624112_126624475
82656	chr5	+	3294	16	FSM	ENSMUSG00000015942.10	ENSMUST00000016086.10	3482	16	186	2	186	-2	multi-exon	FALSE	canonical	1	3	junction_8	3.05505046330389	12	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTTTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	134213051	134246986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_134213098_134220018_134220117_134221491_134221631_134223699_134223817_134225262_134225447_134226088_134226118_134230244_134230300_134231079_134231124_134232111_134232190_134235611_134235669_134237720_134237784_134240038_134240117_134241893_134241978_134242808_134242993_134243482_134243512_134244977
82657	chr7	-	2921	1	Antisense	novelGene_ENSMUSG00000109904.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAATCCCAGCACTTGGG	3832	False	NA	NA	False	NA	NA	NA	109720042	109717121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_109717100_109720000
82658	chr5	-	1514	10	NNC	ENSMUSG00000029713.16	novel	1860	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	225.5974783153	321	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTCTCCTTGCTTACTG	1835	False	NA	NA	False	NA	NA	NA	137531469	137526388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137528956_137529060_137531400
82659	chrX	-	2429	3	ISM	ENSMUSG00000031434.16	ENSMUST00000033811.14	4412	16	37187	90	1636	-18	3prime_fragment	FALSE	canonical	3	46	junction_1	2.5	36	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGCCAGCCACCGCACA	NA	False	NA	NA	False	NA	NA	NA	138735216	138722470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_138724163_138724714_138725394_138735158
82660	chr4	-	2587	6	NNC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	48.0524713204222	53	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACCCTTGTGTGAACA	8	True	NA	NA	False	NA	NA	NA	16013784	15997229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013515
82661	chr11	+	1798	12	NIC	ENSMUSG00000020389.20	novel	2051	13	NA	NA	10	-114	combination_of_known_splicesites	FALSE	canonical	1	2	junction_10	3.08823413662964	19	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAACACTTTATAATCTT	NA	False	NA	NA	False	NA	NA	NA	51895185	51924437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_51895245_51895739_51895920_51901957_51902153_51909103_51909283_51910556_51910670_51913564_51913705_51916665_51916755_51917585_51917746_51917839_51918169_51920668_51920763_51923188_51923352_51924340
82662	chr14	-	2298	4	Intergenic	novelGene_552	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	43	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCACGTGTTCGCCCCTTG	NA	False	NA	NA	False	NA	NA	NA	42038231	41955874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_41955898_41956493_41956981_41959818_41961404_42038028
82664	chr11	+	1366	3	Antisense	novelGene_ENSMUSG00000017386.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	178	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTGGCATGCTGGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	78050232	78051926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_78051375_78051618_78051775_78051858
82665	chr11	+	3112	1	Antisense	novelGene_ENSMUSG00000020311.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	85	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCCACGGGAGATTTAA	4149	False	NA	NA	False	NA	NA	NA	30889564	30892676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_30889600_30892700
82666	chr12	-	967	2	Antisense	novelGene_ENSMUSG00000077001.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCAAAGCCACCCTGGCA	NA	False	NA	NA	False	NA	NA	NA	109696229	109691656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_109692601_109696206
82667	chr9	+	2367	8	NNC	ENSMUSG00000036411.11	novel	2223	7	NA	NA	-9253	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.15078753637713	19	43	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGAAAACTTTTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	22313555	22355968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22313693_22322792_22323046_22335408_22336104_22341651_22341796_22342971_22343105_22346390_22346697_22351162_22351261_22355367
82668	chr2	+	1663	4	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	-203778	9483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	6	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTATTTCCCAACAAC	NA	False	NA	NA	False	NA	NA	NA	176986229	177211039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176986336_177038434_177038553_177199035_177199097_177209661
82669	chr8	-	849	4	NNC	ENSMUSG00000093904.3	novel	4902	5	NA	NA	-1	441	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3178.26968997633	35	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCGGTGTGTTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	127672591	127661294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_127661810_127666654_127666704_127667928_127667976_127672353
82670	chr3	+	1019	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	34	6	1	-6	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	1	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCGATGTGTTTGTCTTG	3591	False	NA	NA	False	NA	NA	NA	88486948	88495720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
82671	chr17	+	1926	2	ISM	ENSMUSG00000023826.17	ENSMUST00000190894.2	2182	3	20719	1	20719	-1	3prime_fragment	FALSE	canonical	2	2	junction_1	0	21	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAATCAAAAGCGTGTT	NA	False	NA	NA	False	NA	NA	NA	12269521	12282244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_12269631_12280427
82672	chr5	+	4288	21	FSM	ENSMUSG00000061288.14	ENSMUST00000111978.8	4467	21	61	118	61	24	multi-exon	TRUE	canonical	0	0	junction_10	2.74727137356323	26	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCTCCGCTCCTTTTGCA	1447	False	NA	NA	False	NA	NA	NA	117258254	117413164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_117258405_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
82673	chr7	-	171	1	FSM	ENSMUSG00000067121.3	ENSMUST00000086958.3	862	1	504	187	504	-187	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGCCCAGACATCAGGAG	NA	False	NA	NA	False	NA	NA	NA	101223024	101222853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_101222900_101223000
82674	chr7	-	1096	5	ISM	ENSMUSG00000030590.16	ENSMUST00000150431.8	1632	6	635	0	55	0	3prime_fragment	FALSE	canonical	3	257	junction_3	29.4066319050652	60	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	28854973	28851936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576
82675	chr2	+	1101	1	Antisense	novelGene_ENSMUSG00000026940.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTTCTGTCCCTTCTCTT	130	False	NA	NA	False	NA	NA	NA	25501997	25503098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_25502000_25503100
82676	chr5	-	1948	9	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	36	-3	intron_retention	FALSE	canonical	2	4	junction_2	123.807309961892	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATATTTGTTTTCTCATC	5372	False	NA	NA	False	NA	NA	NA	143314908	143302247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_143302588_143305985_143306069_143306151_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311087_143311179_143311853_143311979_143314145
82677	chr8	+	1042	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	-272	-14	-64	0	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	432	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCTTTGACCAGTCTG	8549	False	NA	NA	False	NA	NA	NA	70592084	70598199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
82678	chr13	+	1800	13	FSM	ENSMUSG00000021373.17	ENSMUST00000021802.16	3713	13	235	1678	-42	77	multi-exon	FALSE	canonical	3	12	junction_1	4.58257569495584	61	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAAAAGAATTCTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	46655558	46802079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_46655688_46678890_46679013_46684452_46684554_46713979_46714058_46763071_46763216_46763539_46763626_46768725_46768832_46789096_46789287_46791324_46791498_46793298_46793423_46793515_46793599_46800001_46800143_46801756
82679	chr2	-	1995	1	FSM	ENSMUSG00000051817.9	ENSMUST00000182625.2	4453	1	1167	1291	1150	-1288	mono-exon	FALSE	NA	NA	NA	NA	NA	234	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCCCTGTGGTTCTGCA	NA	False	NA	NA	False	NA	NA	NA	152238816	152236821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152236800_152238800
82680	chrX	-	1006	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	26	0	26	0	multi-exon	FALSE	canonical	3	30	junction_3	203.601462557506	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	NA	False	NA	NA	NA	72502624	72480920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
82681	chr6	+	494	1	FSM	ENSMUSG00000071419.8	ENSMUST00000121788.2	438	1	-29	-27	-29	27	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGGGGGGGGGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	57994461	57994955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_57994500_57995000
82682	chr9	-	1199	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	-162	-150	12	-6	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	279	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGCATCTCAGGGTACTTT	NA	False	NA	NA	False	NA	NA	NA	66951177	66935179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
82683	chr11	-	1673	14	FSM	ENSMUSG00000020311.18	ENSMUST00000073192.14	2532	14	24	835	24	142	multi-exon	TRUE	canonical	2	57	junction_8	15.3746121325012	118	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCAGATCCTTGTCTCACT	NA	False	NA	NA	False	NA	NA	NA	30904128	30881608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899942_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
82684	chr17	+	1950	16	NNC	ENSMUSG00000038677.15	novel	4003	16	NA	NA	-3105	1501	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_6	15.1458098349199	1	77	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGGCAGCACCGAGCAGG	NA	False	NA	NA	False	NA	NA	NA	28358009	28384585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28358118_28371371_28371495_28372532_28372659_28374865_28375001_28375735_28375862_28376046_28376168_28377861_28377903_28379785_28379903_28381289_28381413_28381927_28382045_28382705_28382836_28383018_28383136_28383271_28383377_28383647_28383765_28384036_28384196_28384400
82685	chr5	-	1845	4	NNC	ENSMUSG00000085915.2	novel	886	5	NA	NA	117432	1452	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.471404520791032	27	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTGGTGTCCTTGTCCCGA	NA	False	NA	NA	False	NA	NA	NA	100385546	100366846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100367676_100367936_100368490_100373633_100373836_100385285
82686	chr3	-	1193	1	Genic_Genomic	ENSMUSG00000015943.12	novel	NA	NA	NA	NA	-193	1	mono-exon	FALSE	NA	NA	NA	NA	NA	102	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACGGTGCTCTTAATACC	NA	False	NA	NA	False	NA	NA	NA	96105095	96103902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_96103900_96105100
82687	chr4	-	1382	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	83	352	-18	-352	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACACTGTTGGATGTCA	NA	False	NA	NA	False	NA	NA	NA	143026051	142994352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
82688	chr4	+	692	1	Antisense	novelGene_ENSMUSG00000028583.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTATCTTTCCTTTGGTA	NA	False	NA	NA	False	NA	NA	NA	142994120	142994812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_142994100_142994800
82689	chr18	+	2484	3	NNC	ENSMUSG00000057561.11	novel	2165	3	NA	NA	-20	-7338	intron_retention	FALSE	non_canonical	0	0	junction_1	0	13	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGGAAAAAGGTCATCAG	NA	False	NA	NA	False	NA	NA	NA	46730844	46734900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46731915_46733283_46733506_46733708
82690	chr8	-	2031	4	ISM	ENSMUSG00000036199.10	ENSMUST00000110167.5	1251	5	-622	-10	-622	10	intron_retention	FALSE	canonical	3	6124	junction_2	115.905133622286	12674	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTGACTCTATCGTGGAT	NA	False	NA	NA	False	NA	NA	NA	70355830	70346819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_70347061_70347153_70347226_70347891_70347971_70354191
82691	chr9	+	2757	9	NIC	ENSMUSG00000070291.5	novel	2207	17	NA	NA	16272	-10	intron_retention	FALSE	canonical	3	56	junction_1	10.4813823038758	27	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGTTTTTAACCTTGTTG	NA	False	NA	NA	False	NA	NA	NA	78319330	78330859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_78321167_78321505_78321607_78323944_78324033_78325318_78325447_78325614_78325725_78326493_78326633_78327870_78327959_78328979_78329121_78330733
82692	chr5	+	1095	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	118	-66	118	66	multi-exon	FALSE	canonical	3	465	junction_1	0	1310	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTGTGGATACATTTAC	NA	False	NA	NA	False	NA	NA	NA	21087306	21091934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_21087654_21091186
82693	chr9	+	1090	4	NIC	ENSMUSG00000032478.15	novel	905	6	NA	NA	-4	-45	combination_of_known_junctions	FALSE	canonical	3	32	junction_3	271.669325140367	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCTCTCGGCAGGTTGAT	NA	False	NA	NA	False	NA	NA	NA	109662093	109672139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109662364_109664385_109664483_109668675_109668779_109671519
82694	chr9	-	3373	5	FSM	ENSMUSG00000032358.13	ENSMUST00000183437.8	3879	5	14	492	14	159	multi-exon	FALSE	canonical	1	2	junction_4	1.87082869338697	12	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGATGGGATTCATTG	NA	False	NA	NA	False	NA	NA	NA	76474384	76397827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_76400368_76409390_76409516_76410299_76410465_76452621_76453126_76474345
82695	chr4	-	903	4	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	12258	34	-160	-25	3prime_fragment	FALSE	canonical	3	9851	junction_2	447.097304845377	2	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGCACCTGTTAATAAAG	NA	False	NA	NA	False	NA	NA	NA	119139543	119135211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342
82696	chr17	-	1392	10	ISM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	-8	1145	4	-469	5prime_fragment	FALSE	canonical	3	70	junction_2	26.0829635519877	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTTCCTCTTCACCTCT	NA	False	NA	NA	False	NA	NA	NA	36220945	36211853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
82697	chr1	+	3360	17	ISM	ENSMUSG00000037995.16	ENSMUST00000111235.8	4205	21	8075	20	-698	-19	3prime_fragment	TRUE	canonical	2	4	junction_12	2.97318747306657	16	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTCTGGAAACCGTTT	383	False	NA	NA	False	NA	NA	NA	172317955	172326425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_172318011_172318221_172318340_172319181_172319324_172319431_172319578_172319667_172319811_172321053_172321195_172321664_172321782_172321972_172322124_172322319_172322444_172322674_172322851_172323100_172323352_172323549_172323635_172323717_172323895_172324164_172324208_172324452_172325314_172325563_172325692_172325923
82698	chr10	+	1688	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	64	708	25	670	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAACAAAAACAATAAAA	1833	False	NA	NA	False	NA	NA	NA	79824481	79831188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
82699	chr13	+	4518	3	FSM	ENSMUSG00000041773.9	ENSMUST00000041623.9	4737	3	225	-6	225	6	multi-exon	FALSE	canonical	3	5	junction_1	2	52	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTATTGTGAGTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	97377837	97389548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_97378038_97381478_97383293_97387044
82700	chr2	-	2265	12	FSM	ENSMUSG00000026740.13	ENSMUST00000166495.8	5497	12	305	2927	-104	459	multi-exon	FALSE	canonical	3	39	junction_5	8.9016666653772	35	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTTGGGCTTGTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	18397336	18221486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_18222137_18224261_18224711_18227523_18227573_18236514_18236635_18289433_18289598_18298764_18298856_18311783_18311878_18312725_18312824_18313594_18313761_18321168_18321216_18321709_18321812_18397101
82701	chr8	-	1460	4	NNC	ENSMUSG00000014633.16	novel	1459	4	NA	NA	6117	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	149.34151763287	16	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAGGAGAAGCTAATCAAT	NA	False	NA	NA	False	NA	NA	NA	117641987	117615442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117616599_117620826_117620899_117637866_117637974_117641862
82702	chr2	+	2006	1	Intergenic	novelGene_2851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCTTCCTTATACAACT	NA	False	NA	NA	False	NA	NA	NA	177215302	177217308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_177215300_177217300
82703	chr4	-	1212	1	Antisense	novelGene_ENSMUSG00000033423.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGTGTTAGACTCTTAG	NA	False	NA	NA	False	NA	NA	NA	117531478	117530266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_117530300_117531500
82704	chr9	-	4070	13	ISM	ENSMUSG00000032120.12	ENSMUST00000065080.10	4337	14	1130	993	1097	-19	3prime_fragment	FALSE	canonical	3	36	junction_2	6.41396046829795	37	52	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATTGGAGTTTATAAAC	6445	False	NA	NA	False	NA	NA	NA	44230452	44221526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_44222565_44224802_44225089_44225174_44225309_44225451_44225554_44226176_44226352_44226443_44226572_44226660_44226726_44227402_44227512_44227602_44227715_44227807_44227925_44228004_44228116_44228296_44228417_44228879
82705	chr2	-	2560	14	NIC	ENSMUSG00000027030.16	novel	3536	18	NA	NA	254	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	15.9592676790657	46	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGCACTCGAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	68216771	68040797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68198740_68198843_68199339_68199450_68216683
82706	chr8	+	1953	1	FSM	ENSMUSG00000099338.2	ENSMUST00000190461.2	1039	1	-40	-874	-8	874	mono-exon	FALSE	NA	NA	NA	NA	NA	33	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATAGCCCCCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	13250711	13252664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_13250700_13252700
82707	chr13	-	787	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	-13	400	-11	60	multi-exon	FALSE	canonical	3	41	junction_2	520.5	2197	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATGTAAAGGCTCAATG	NA	False	NA	NA	False	NA	NA	NA	14787623	14784897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_14785326_14786007_14786190_14787446
82708	chr8	-	2344	15	NNC	ENSMUSG00000074219.4	novel	496	7	NA	NA	-3243	2202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCTCCTCACGGTTCGCA	9	True	NA	NA	False	NA	NA	NA	84663929	84656755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84656891_84657583_84657904_84658239_84658344_84658594_84658789_84659006_84659038_84659134_84659319_84659466_84659591_84660053_84660268_84660503_84660682_84661058_84661264_84661344_84661568_84661692_84661759_84662169_84662260_84662645_84662816_84663823
82709	chrX	+	1451	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	43	-1015	23	-5	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	740	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTGACTTGGCTGTTAC	NA	False	NA	NA	False	NA	NA	NA	143101041	143108188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
82710	chr17	-	2038	11	FSM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	-24	20	6	15	multi-exon	FALSE	canonical	3	5	junction_1	41.2200194080498	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGAAAAACATCTTAAGGTT	NA	False	NA	NA	False	NA	NA	NA	36220961	36210728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36211765_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
82711	chr17	-	1891	1	Genic_Genomic	ENSMUSG00000024212.10	novel	NA	NA	NA	NA	2732	559	mono-exon	FALSE	NA	NA	NA	NA	NA	71	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGAGCTTGGCACTAC	9345	False	NA	NA	False	NA	NA	NA	57200942	57199051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_57199100_57200900
82712	chr15	+	3175	1	ISM	ENSMUSG00000072501.6	ENSMUST00000048188.10	6665	21	64313	188	11005	-188	mono-exon	FALSE	NA	NA	NA	NA	NA	21	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCATTGTCACTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	66513741	66516916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_66513700_66516900
82713	chr5	-	3270	10	Antisense	novelGene_ENSMUSG00000029458.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	30	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCACTTCATCTTACAAAG	NA	False	NA	NA	False	NA	NA	NA	121825303	121801369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121801555_121803161_121803351_121810145_121810262_121813292_121813442_121816826_121816903_121817273_121817411_121817877_121817988_121820840_121820931_121822431_121822538_121823191
82714	chr10	-	3624	4	FSM	ENSMUSG00000046822.15	ENSMUST00000117276.11	3796	4	149	23	5	-20	multi-exon	FALSE	canonical	3	49	junction_3	7.58653778449403	29	48	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAGTGAAGATTTAAACT	NA	False	NA	NA	False	NA	NA	NA	80873111	80864394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80867535_80869445_80869768_80870751_80870840_80873037
82715	chr9	-	577	1	ISM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	20597	14	1332	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	252	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACACCAAAAACTTCCG	NA	False	NA	NA	False	NA	NA	NA	107491914	107491337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107491300_107491900
82716	chr10	-	3648	3	ISM	ENSMUSG00000039879.10	ENSMUST00000037879.8	5098	4	32919	7	54	0	3prime_fragment	FALSE	canonical	3	90	junction_1	3.5	102	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAACTTTGCATTTTAG	8544	False	NA	NA	False	NA	NA	NA	17790896	17774789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_17778126_17783781_17783937_17790739
82717	chr6	-	2789	3	Antisense	novelGene_ENSMUSG00000053297.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGCGCTGGTGCGTGAG	3143	False	NA	NA	False	NA	NA	NA	48610622	48606442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_48606936_48607102_48607248_48608471
82718	chr7	+	1262	5	NNC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	48	-3	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	171.1906831577	931	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTCATTTTATTGCTATT	NA	False	NA	NA	False	NA	NA	NA	109303006	109311393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109303556_109304157_109304239_109306604_109306719_109308147_109308229_109310956
82719	chr11	-	3069	19	NIC	ENSMUSG00000041592.17	novel	11287	45	NA	NA	-7133	-4331	combination_of_known_junctions	TRUE	canonical	0	0	junction_11	2.33861835331658	17	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAGAAAACCCCACCAAGA	NA	False	NA	NA	False	NA	NA	NA	113724178	113671530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_113671970_113682200_113682328_113684125_113684265_113684548_113684690_113685748_113685914_113690968_113691095_113693950_113694113_113697092_113697231_113701154_113701342_113712173_113712290_113712401_113712504_113715840_113715977_113717267_113717339_113717852_113717957_113719183_113719386_113720723_113720919_113721605_113721705_113723079_113723270_113723948
82720	chr18	+	1634	8	ISM	ENSMUSG00000079608.11	ENSMUST00000114959.9	1496	9	509	-14	-54	14	3prime_fragment	FALSE	canonical	0	0	junction_4	1.95875845725744	44	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACATTTTAAATTATTTT	NA	False	NA	NA	False	NA	NA	NA	70606033	70634151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_70606426_70607355_70607437_70609170_70609265_70609452_70609503_70616482_70616610_70629184_70629303_70631618_70631713_70633473
82721	chr17	-	3652	9	FSM	ENSMUSG00000023965.14	ENSMUST00000024761.13	4925	9	943	330	943	0	multi-exon	FALSE	canonical	3	52	junction_1	4.68874983337776	25	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGTCTCACAAATAGATG	NA	False	NA	NA	False	NA	NA	NA	63806069	63364776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_63367407_63387415_63387559_63532019_63532097_63663742_63663874_63691939_63692048_63778402_63778535_63794706_63794965_63797759_63797883_63806019
82722	chr3	+	730	4	NIC	ENSMUSG00000042747.13	novel	582	5	NA	NA	53	1	intron_retention	FALSE	canonical	3	1794	junction_2	31.5418593124896	62	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7644	False	NA	NA	False	NA	NA	NA	89153793	89157030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89154240_89154371_89154436_89156380_89156448_89156877
82723	chr8	+	3111	25	NIC	ENSMUSG00000031576.17	novel	3536	27	NA	NA	2192	-5	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_6	2.35702260395516	40	29	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGTACTAAAGTTCATTGC	NA	False	NA	NA	False	NA	NA	NA	26341842	26427956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_26341972_26348150_26348213_26349250_26349342_26351106_26351219_26352414_26352491_26355653_26355730_26371324_26371496_26373640_26373733_26375282_26375394_26376733_26376840_26379989_26380073_26381560_26381631_26382016_26382170_26386636_26386750_26387818_26387888_26389763_26389854_26389975_26390074_26395904_26396041_26400877_26400975_26403611_26403837_26408316_26408504_26409611_26409690_26411447_26411588_26424432_26424546_26427523
82724	chr15	+	3133	10	ISM	ENSMUSG00000023017.11	ENSMUST00000023758.9	4114	12	2575	1	276	-1	3prime_fragment	FALSE	canonical	2	3	junction_3	3.12694383988229	20	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTTCAGTGTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	99570823	99599008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_99570945_99592574_99592726_99593353_99593482_99594392_99594544_99594852_99594910_99595319_99595474_99595927_99596020_99596510_99596591_99596675_99596781_99596914
82725	chr13	+	2189	3	Intergenic	novelGene_1500	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCCAGGCACTCCCAC	NA	False	NA	NA	False	NA	NA	NA	89872158	89890680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_89873783_89879577_89879653_89890190
82726	chr8	+	1484	4	FSM	ENSMUSG00000031851.15	ENSMUST00000065135.12	1497	4	8	5	8	-5	multi-exon	FALSE	canonical	3	8	junction_3	41.4273125150814	72	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCCATGTCTAATTA	NA	False	NA	NA	False	NA	NA	NA	126460984	126465913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126464793
82727	chr7	+	2595	9	Fusion	ENSMUSG00000030472.10_ENSMUSG00000055102.16	novel	2362	5	NA	NA	18	190	multi-exon	FALSE	canonical	2	2	junction_7	25.617376914899	13	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTACAGTTCAGAGGA	2854	False	NA	NA	False	NA	NA	NA	43256610	43298909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43286180_43286535_43288656_43288930_43291238_43291515_43294896_43295035_43297899
82728	chr14	-	1390	4	FSM	ENSMUSG00000095304.10	ENSMUST00000052286.16	1555	4	155	10	155	-10	multi-exon	TRUE	canonical	3	143	junction_3	28.7170100579198	654	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCATAACATCAGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	25903369	25887939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25903209
82729	chr8	+	1968	7	NNC	ENSMUSG00000031568.17	novel	2921	8	NA	NA	-19	563	intron_retention	FALSE	non_canonical	0	0	junction_6	72.1795600491503	278	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATCGTGATGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	47986679	48004888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_47986979_47990313_47990395_47995726_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48003726
82730	chr15	-	3029	7	NNC	ENSMUSG00000058099.17	novel	7634	6	NA	NA	-19562	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	0	12	18	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGACCCATTGCCTGCCC	NA	False	NA	NA	False	NA	NA	NA	82937069	82881921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_82883997_82885615_82885703_82894575_82894675_82899115_82899229_82900544_82900863_82936083_82936264_82936912
82731	chr6	+	2723	12	Intergenic	novelGene_4145	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGGTGTCCGCGGTTCA	NA	False	NA	NA	False	NA	NA	NA	38692874	38852755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_38693159_38695690_38695868_38698388_38698535_38706857_38706980_38707805_38708011_38714291_38714456_38720010_38720202_38722602_38722686_38724381_38724502_38724808_38724939_38795170_38796246_38852729
82732	chr6	+	1495	2	Intergenic	novelGene_4146	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCAGCCTCAGTGGGAAT	NA	False	NA	NA	False	NA	NA	NA	38794834	38852813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_38796246_38852729
82733	chr6	-	2222	1	Antisense	novelGene_ENSMUSG00000037827.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	111	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCGCCGCCGACCCGCC	NA	False	NA	NA	False	NA	NA	NA	128624048	128621826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_128621800_128624000
82734	chr13	+	3967	8	FSM	ENSMUSG00000042082.8	ENSMUST00000091403.6	4038	8	56	15	-10	-15	multi-exon	FALSE	canonical	0	0	junction_4	3.27014946921703	12	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTCTAAAACTATGTCA	NA	False	NA	NA	False	NA	NA	NA	93908193	94079509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_93908601_93926546_93926734_93930535_93930727_93944003_93944212_93998594_93998839_94016995_94017067_94075734_94075858_94076973
82735	chr18	-	2320	6	NNC	ENSMUSG00000024505.17	novel	3145	6	NA	NA	-12681	660	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	78.2186678485386	83	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTGCTATGATTGCTC	NA	False	NA	NA	False	NA	NA	NA	49901349	49829879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_49831568_49833325_49833455_49856688_49856882_49857179_49857275_49861435_49861527_49901225
82736	chr5	-	1262	8	NNC	ENSMUSG00000029151.15	novel	1989	9	NA	NA	243	-614	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	9.95500079439105	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGCACCTGCCTCCCAG	2801	False	NA	NA	False	NA	NA	NA	31251902	31244063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31251762
82737	chr5	-	988	6	NIC	ENSMUSG00000040537.18	novel	527	7	NA	NA	18	-306	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	7.39188744503053	24	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGAGGCCAATATCCCA	NA	False	NA	NA	False	NA	NA	NA	8166587	8128144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_8128707_8132145_8132270_8142339_8142407_8142730_8142832_8161894_8161986_8166544
82738	chr6	-	1073	4	FSM	ENSMUSG00000002797.10	ENSMUST00000131475.2	3960	4	-2	2889	-2	179	multi-exon	FALSE	canonical	3	101	junction_2	27.1947707391615	1390	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACAAAGATGGTACACTG	2698	False	NA	NA	False	NA	NA	NA	54969937	54962453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_54962987_54963817_54963954_54966396_54966543_54969679
82739	chr15	-	1828	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	34	1313	34	848	multi-exon	FALSE	canonical	3	365	junction_5	42.5977866628236	5	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCAGGCCTTTTCTGGT	NA	False	NA	NA	False	NA	NA	NA	57755810	57734210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
82740	chr17	+	2244	2	Intergenic	novelGene_318	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	70	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAGGGACGTTGGATGG	NA	False	NA	NA	False	NA	NA	NA	88469601	88480285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_88471784_88480223
82741	chr10	+	1673	1	ISM	ENSMUSG00000035863.15	ENSMUST00000046945.13	2651	9	25651	1	4553	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	84	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79655056	79656729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79655100_79656700
82742	chr11	+	2367	3	NNC	ENSMUSG00000086617.2	novel	472	3	NA	NA	3339	681	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10	7	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTAATGCCTGTGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	101504864	101507463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101506824_101507017_101507086_101507123
82743	chr18	-	1370	4	FSM	ENSMUSG00000063889.17	ENSMUST00000149803.8	1422	4	-32	84	-32	-84	multi-exon	FALSE	canonical	3	52	junction_2	16.5797734872612	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCCAAATAAAATTCAAAGAC	9	True	NA	NA	False	NA	NA	NA	3337621	3294267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_3295183_3295321_3295417_3325360_3325479_3337379
82744	chr8	+	2090	1	NIC	ENSMUSG00000036879.16	novel	481	5	NA	NA	7	-36613	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTGTATAGACCCCAAA	NA	False	NA	NA	False	NA	NA	NA	86567651	86569741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86567700_86569700
82745	chr15	+	435	3	Intergenic	novelGene_3287	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	4	37	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATTTTTCATTACAAT	NA	False	NA	NA	False	NA	NA	NA	42813790	42817491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_42813895_42814164_42814368_42817363
82746	chr6	-	786	4	FSM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	-116	0	-116	0	multi-exon	FALSE	canonical	3	1410	junction_2	59.4474557908074	7098	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	8259289	8255935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_8256248_8256694_8256804_8257686_8257762_8258999
82747	chr11	-	1346	4	Intergenic	novelGene_2252	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	6	junction_2	5.79271573232759	90	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGGCTCAAAATCGTG	NA	False	NA	NA	False	NA	NA	NA	33494393	33487369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_33487917_33490994_33491103_33492017_33492568_33494252
82748	chr19	+	1599	1	ISM	ENSMUSG00000025207.17	ENSMUST00000026225.15	4548	15	12698	0	9663	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGAGTGTCTGCTTGGT	161	False	NA	NA	False	NA	NA	NA	44990237	44991836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_44990200_44991800
82749	chr10	-	842	8	NNC	ENSMUSG00000036009.17	novel	2033	12	NA	NA	41279	-2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	43.1797382567144	379	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGATCAATGTTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	105635793	105599051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105635662
82750	chr3	+	1828	9	NIC	ENSMUSG00000109293.2	novel	2285	16	NA	NA	5279	94	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	4.26468052730799	54	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAATCTTAAATTATTAT	2653	False	NA	NA	False	NA	NA	NA	89274560	89284950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89275242_89275397_89275556_89276011_89276177_89278006_89278108_89278839_89278971_89279954_89280083_89280529_89280624_89280731_89280888_89284736
82751	chrM	+	864	2	Genic_Genomic	ENSMUSG00000064345.1	novel	1038	1	NA	NA	12	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAAGTTTAGGATATACTA	9	True	NA	61	True	NA	NA	NA	3925	4948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_4392_4550
82752	chr5	-	2225	5	Antisense	novelGene_ENSMUSG00000107164.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	51	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTATACCGGGCCATCTTG	NA	False	NA	NA	False	NA	NA	NA	149386070	149363207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_149363253_149369234_149369320_149376759_149376923_149380280_149380428_149384285
82754	chr17	-	343	1	Antisense	novelGene_ENSMUSG00000023939.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGATGGTATGGGGTGCTGC	9272	False	NA	NA	False	NA	NA	NA	46009404	46009061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_46009100_46009400
82755	chr12	+	1654	3	Intergenic	novelGene_4318	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	1	28	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCAAGCTTCAGCTCCC	NA	False	NA	NA	False	NA	NA	NA	22108622	22122887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_22108865_22112149_22112205_22121530
82756	chr5	-	4458	1	Intergenic	novelGene_698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTGAGTCAGTCCAACC	NA	False	NA	NA	False	NA	NA	NA	33681407	33676949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_33676900_33681400
82757	chr3	-	897	3	NNC	ENSMUSG00000015943.12	novel	995	4	NA	NA	26	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	220.5	2309	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGCTCTTAATACCTGTT	NA	False	NA	NA	False	NA	NA	NA	96105779	96103898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_96104596_96104865_96105039_96105752
82758	chr4	+	3065	1	Intergenic	novelGene_1819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTATTTAAACACAAACTA	NA	False	NA	NA	False	NA	NA	NA	34823070	34826135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_34823100_34826100
82759	chr11	+	2138	2	FSM	ENSMUSG00000047904.7	ENSMUST00000146390.3	2143	2	-8	13	-8	-13	multi-exon	FALSE	canonical	2	8	junction_1	0	19	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAATTGAAAG	NA	False	NA	NA	False	NA	NA	NA	113510159	113516841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_113510449_113514992
82760	chr4	+	4042	1	Intergenic	novelGene_1856	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGAGTTGTGTGCTGAC	4732	False	NA	NA	False	NA	NA	NA	53571321	53575363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_53571300_53575400
82761	chr12	-	1848	8	NNC	ENSMUSG00000021056.9	novel	2137	10	NA	NA	-483	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	10.8157104175701	47	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTCTCTCCTGTGCTTG	NA	False	NA	NA	False	NA	NA	NA	76276721	76245459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_76245726_76250865_76251085_76253561_76253769_76259148_76259332_76261186_76261493_76263736_76263867_76268256_76268514_76276441
82762	chr14	-	1729	7	NNC	ENSMUSG00000095318.2	novel	1408	5	NA	NA	-11475	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.897527467855751	12	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATCATCTCTAATTAT	NA	False	NA	NA	False	NA	NA	NA	42357714	42340832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_42341608_42342740_42342925_42343577_42343710_42344962_42345126_42353010_42353257_42356337_42356458_42357605
82763	chr16	+	1893	1	ISM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	120469	1166	100860	-1166	mono-exon	FALSE	NA	NA	NA	NA	NA	35	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAATAATTTTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	33321674	33323567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_33321700_33323600
82764	chr7	+	2128	1	Antisense	novelGene_ENSMUSG00000070526.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGTCCT	NA	False	NA	NA	False	NA	NA	NA	62110911	62113039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_62110900_62113000
82765	chr11	-	2081	8	FSM	ENSMUSG00000020847.16	ENSMUST00000066504.11	988	8	4	-1097	4	-41	multi-exon	FALSE	canonical	3	14	junction_1	2.29462548631557	31	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGGGTCCTAAATAAACC	NA	False	NA	NA	False	NA	NA	NA	75801884	75721865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_75723041_75724227_75724375_75725588_75725703_75745129_75745305_75769774_75769862_75797343_75797474_75799736_75799881_75801775
82766	chr10	+	1726	2	NIC	ENSMUSG00000047139.10	novel	574	2	NA	NA	-429	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	0	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGCAGTCTGTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	43454735	43460259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_43454802_43458599
82767	chr9	-	2473	1	Antisense	novelGene_ENSMUSG00000032497.20_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAATAATCT	179	False	NA	NA	False	NA	NA	NA	110947087	110944614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_110944600_110947100
82768	chr10	-	1751	4	FSM	ENSMUSG00000019853.7	ENSMUST00000020000.7	2535	4	152	632	-37	628	multi-exon	FALSE	canonical	3	26	junction_2	0.471404520791032	73	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCAGCGGTTCTCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	18421672	18415877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_18417081_18420012_18420194_18420825_18420962_18421441
82769	chr11	-	526	1	ISM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	30913	7	30913	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	16	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAATGACGGCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	88815378	88814852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_88814900_88815400
82770	chr18	-	945	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173875.9	1979	5	525	509	0	56	multi-exon	FALSE	canonical	3	1172	junction_4	156.810992918226	4373	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTGCTTGTCTCATTCAT	NA	False	NA	NA	False	NA	NA	NA	36803343	36800242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803300
82771	chr8	-	1601	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	125	-420	125	420	multi-exon	FALSE	canonical	3	275	junction_1	0	130	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCTATTGGAGGACTGTG	NA	False	NA	NA	False	NA	NA	NA	107775121	107772731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107773904_107774692
82772	chr9	+	1298	3	NNC	ENSMUSG00000032024.11	novel	616	4	NA	NA	6658	-1298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	70	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAGGTGTCTGAGAAA	4200	False	NA	NA	False	NA	NA	NA	40692047	40695317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40692496_40694222_40694287_40694531
82773	chr17	-	1452	6	NNC	ENSMUSG00000057789.15	novel	2387	6	NA	NA	-49	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.282224992489	22	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACACCTCGCCTGGCAT	NA	False	NA	NA	False	NA	NA	NA	27247610	27238790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27239200_27239311_27239807_27241471_27241557_27241715_27241852_27244766_27244868_27247384
82774	chr12	+	1843	1	ISM	ENSMUSG00000021268.18	ENSMUST00000143272.8	5971	7	17884	484	10100	-484	mono-exon	FALSE	NA	NA	NA	NA	NA	9	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGAGCCCAAACACCAGC	NA	False	NA	NA	False	NA	NA	NA	109525789	109527632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_109525800_109527600
82775	chr5	-	3159	1	FSM	ENSMUSG00000035325.17	ENSMUST00000182144.2	756	1	73	-2476	73	2476	mono-exon	FALSE	NA	NA	NA	NA	NA	8	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTTAAAAAAAATAACAATT	8249	False	NA	NA	False	NA	NA	NA	100563952	100560793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_100560800_100564000
82776	chr8	+	2366	6	FSM	ENSMUSG00000025521.16	ENSMUST00000026595.13	1122	6	70	-1314	1	1314	multi-exon	FALSE	canonical	3	529	junction_4	36.201657420621	201	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTATTCCTATGTGGCACT	NA	False	NA	NA	False	NA	NA	NA	65399906	65422999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849_65416985_65418190_65418294_65421362
82777	chr4	+	2547	2	NIC	ENSMUSG00000087084.2	novel	1720	3	NA	NA	-158	797	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	0	24	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATAAAGCTGCCTCGTTC	NA	False	NA	NA	False	NA	NA	NA	140107782	140113682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_140108031_140111383
82778	chr6	-	1196	3	NIC	ENSMUSG00000087578.2	novel	891	3	NA	NA	-28	417	combination_of_known_splicesites	TRUE	canonical	1	1	junction_2	2	36	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACGTGGATATATGAT	NA	False	NA	NA	False	NA	NA	NA	83085996	83083171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_83084172_83084723_83084788_83085864
82779	chr7	+	2588	4	FSM	ENSMUSG00000004500.10	ENSMUST00000038701.8	4315	4	5	1722	-2	1388	multi-exon	FALSE	canonical	1	2	junction_1	0.816496580927726	11	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATAAAATATTCTAGCAG	NA	False	NA	NA	False	NA	NA	NA	12699769	12706027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12700227_12702721_12702849_12703290_12703408_12704140
82780	chr5	+	2373	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	64	-316	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	83	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATCCCACACCCGCTTGC	NA	False	NA	NA	False	NA	NA	NA	3391548	3571909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
82781	chr16	-	2064	1	Antisense	novelGene_ENSMUSG00000041215.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGTGAACTTGCACTC	NA	False	NA	NA	False	NA	NA	NA	19992074	19990010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_19990000_19992100
82782	chr3	+	3002	3	Antisense	novelGene_ENSMUSG00000056306.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGAGAGCAGAGCGCACGA	NA	False	NA	NA	False	NA	NA	NA	54804524	54823260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_54807259_54822527_54822692_54823156
82783	chr10	-	1515	9	NNC	ENSMUSG00000019795.18	novel	2607	9	NA	NA	368	-919	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_8	327.300320806442	6	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTGCTGCTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	7538657	7506063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524425_7524814_7524920_7538632
82784	chr10	-	1185	1	Intergenic	novelGene_3457	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGGATCCCCAAAGCAGAG	7162	False	NA	NA	False	NA	NA	NA	62858292	62857107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_62857100_62858300
82785	chr2	+	2003	1	Intergenic	novelGene_2795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAATGTCCCTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	168798159	168800162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_168798200_168800200
82786	chr11	-	1871	12	FSM	ENSMUSG00000020798.15	ENSMUST00000092940.13	2080	12	182	27	-23	-22	multi-exon	TRUE	canonical	0	0	junction_10	5.71210111723818	43	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCATGACCAGTGCAAA	97	False	NA	NA	False	NA	NA	NA	72441150	72389007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72420359_72420550_72427353_72427507_72427996_72428146_72429149_72429217_72429860_72430013_72431240_72431378_72436713_72436780_72440823
82787	chr17	-	3157	1	Intergenic	novelGene_75	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTACCATGGATTTCT	NA	False	NA	NA	False	NA	NA	NA	22995013	22991856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_22991900_22995000
82788	chr11	+	1174	4	Antisense	novelGene_ENSMUSG00000044502.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	239	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTGCTCCCGCAC	NA	False	NA	NA	False	NA	NA	NA	31615189	31621671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_31615868_31616734_31616936_31619244_31619374_31621505
82789	chr2	+	1769	14	NIC	ENSMUSG00000041966.19	novel	1905	15	NA	NA	15	-12	combination_of_known_junctions	FALSE	canonical	3	15	junction_13	72.7748412213514	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTCAGAGCAAGTGGCT	NA	False	NA	NA	False	NA	NA	NA	70886142	70929474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
82790	chr1	-	2138	4	ISM	ENSMUSG00000033722.10	ENSMUST00000186156.7	4873	10	2578	12490	-960	729	internal_fragment	FALSE	canonical	0	0	junction_2	1.69967317119759	5	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCAGTGCTGTCAGGAGC	NA	False	NA	NA	False	NA	NA	NA	155117612	155100706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_155102195_155108191_155108336_155116481_155116546_155117170
82791	chr10	+	2083	11	ISM	ENSMUSG00000003345.17	ENSMUST00000085435.7	1825	12	4608	-383	-131	-21	3prime_fragment	FALSE	canonical	3	537	junction_3	60.3762370473682	98	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAAGAAAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	80470097	80476554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80470476_80473721_80473763_80473843_80473914_80473994_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
82792	chr7	-	850	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	-77	1	-27	0	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	16768	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	28681316	28670797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
82793	chr10	-	1153	2	Antisense	novelGene_ENSMUSG00000094144.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCCCAAGCCCCTCCAGA	NA	False	NA	NA	False	NA	NA	NA	104015296	104013275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_104013343_104014210
82794	chr5	-	1764	6	FSM	ENSMUSG00000029229.9	ENSMUST00000075452.7	9699	6	492	7443	39	5749	multi-exon	FALSE	canonical	3	625	junction_4	34.4290574950869	127	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGTTAATTTATATACC	NA	False	NA	NA	False	NA	NA	NA	75204943	75166091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_75167425_75171891_75171952_75172113_75172171_75187728_75187885_75188021_75188077_75204840
82795	chr11	-	3191	2	Genic_Genomic	ENSMUSG00000041920.15	novel	2354	6	NA	NA	-255	-3004	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATGTTGGGTAGCACGC	3225	False	NA	NA	False	NA	NA	NA	109363769	109360526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_109360822_109360873
82797	chr6	-	3118	6	ISM	ENSMUSG00000004263.16	ENSMUST00000088357.12	4433	10	9194	0	-1705	0	3prime_fragment	FALSE	canonical	3	72	junction_4	10.4307238483242	95	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTGTGACGTGTTTTT	8888	False	NA	NA	False	NA	NA	NA	124724293	124719506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124720069_124720192_124720374_124720710_124720855_124721682_124722380_124722601_124722825_124722982
82798	chr18	+	2487	19	NNC	ENSMUSG00000044024.17	novel	1767	8	NA	NA	2339	10273	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	6	27	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTAGGATTAAGAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	38092204	38102505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_38092708_38092830_38092891_38094302_38094388_38095625_38095847_38095972_38096090_38096179_38096265_38096344_38096469_38097055_38097226_38097369_38097475_38097846_38097962_38098701_38098798_38098949_38099074_38099492_38099623_38100415_38100482_38100592_38100731_38100814_38100946_38101261_38101338_38101805_38101851_38102409
82799	chr6	-	3760	11	FSM	ENSMUSG00000034832.16	ENSMUST00000089622.11	10904	11	58	7086	15	-1417	multi-exon	FALSE	canonical	2	3	junction_8	2.99332590941915	12	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAACAGCCTGAACCCAG	NA	False	NA	NA	False	NA	NA	NA	83418599	83346440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83346808_83347364_83347702_83350175_83350314_83350764_83350855_83352731_83352883_83353747_83353957_83356853_83356948_83362966_83363058_83379648_83381807_83418198_83418256_83418531
82800	chrY	+	525	3	ISM	ENSMUSG00000096768.9	ENSMUST00000177591.2	774	4	252	-1	108	0	intron_retention	FALSE	canonical	3	607	junction_1	708	295	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	4908	False	NA	NA	False	NA	NA	NA	90796962	90827734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrY_+_90797249_90804564_90804687_90827617
82801	SIRV12002	+	2411	1	FSM	SIRV12002A	SIRV12002	11999	1	9583	5	9583	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	13	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAG	NA	False	NA	NA	False	NA	NA	NA	9583	11994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV12002_+_9600_12000
82802	chr17	-	1576	2	Intergenic	novelGene_248	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3	junction_1	0	18	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATGCACATGCATAGAGT	NA	False	NA	NA	False	NA	NA	NA	46036518	46034533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_46035836_46036244
82803	chr14	-	1404	11	ISM	ENSMUSG00000021973.10	ENSMUST00000022543.10	2329	12	27471	694	-16577	-694	3prime_fragment	FALSE	canonical	3	153	junction_3	65.176376088273	39	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATTACACAAAGTATTC	NA	False	NA	NA	False	NA	NA	NA	58209248	58154411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_58154833_58156279_58156438_58156800_58156910_58161396_58161569_58164653_58164752_58169694_58169761_58181044_58181128_58182841_58182890_58191592_58191669_58192455_58192488_58209107
82804	chr9	-	1586	1	Genic_Genomic	ENSMUSG00000043154.16	novel	NA	NA	NA	NA	18543	87	mono-exon	FALSE	NA	NA	NA	NA	NA	13	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTAAATCCTGAGGAGTG	4209	False	NA	NA	False	NA	NA	NA	100983781	100982195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_100982200_100983800
82805	chr4	-	2772	3	Antisense	novelGene_ENSMUSG00000035969.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGGTCGCGCGGCAGCCC	6912	False	NA	NA	False	NA	NA	NA	43422221	43382134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_43382198_43414625_43416716_43421602
82806	chr7	-	1120	9	Antisense	novelGene_ENSMUSG00000035632.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATGGCGGCGGCGGAGGC	8852	False	NA	NA	False	NA	NA	NA	3656614	3648292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_3648583_3653798_3653873_3653977_3654056_3654272_3654303_3654486_3654581_3654804_3654935_3655030_3655128_3656198_3656419_3656507
82808	chr16	+	1963	3	FSM	ENSMUSG00000022676.8	ENSMUST00000023356.8	2021	3	4	54	4	-54	multi-exon	FALSE	canonical	2	2	junction_2	2	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAGTAACTTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	14523719	14527195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_14523917_14524574_14525124_14525978
82809	chr16	-	2629	11	Genic_Genomic	ENSMUSG00000075265.5	novel	1392	3	NA	NA	-12390	1421	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	17	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACAGCAGCTCCAACAGCC	NA	False	NA	NA	False	NA	NA	NA	32499405	32482619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_32482735_32484700_32484773_32487036_32487266_32488209_32488357_32488769_32489046_32489606_32489734_32490109_32490258_32490354_32490449_32494335_32494534_32496709_32496802_32498274
82810	chr10	-	1769	17	NNC	ENSMUSG00000025357.9	novel	2834	24	NA	NA	74	-3382	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.3361219496581	1	32	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGAGTAGGGTCGGGA	9816	False	NA	NA	False	NA	NA	NA	128579870	128559386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128559549_128563929_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128579664
82811	chr4	-	3384	24	NIC	ENSMUSG00000028434.13	novel	6746	26	NA	NA	-64	1062	combination_of_known_splicesites	TRUE	canonical	3	20	junction_2	61.791588246879	14	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATATATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	57103517	56994615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_56995804_56999581_56999728_57007905_57007978_57016853_57016932_57019771_57019959_57024337_57024437_57027608_57027677_57032114_57032241_57038502_57038622_57040843_57041053_57064798_57064864_57068304_57068339_57071051_57071083_57073261_57073372_57076290_57076461_57076533_57076604_57076913_57077003_57077163_57077252_57078874_57078996_57084022_57084076_57085995_57086041_57087985_57088065_57088801_57088845_57103423
82812	chr1	+	621	7	NNC	ENSMUSG00000015314.11	novel	5729	9	NA	NA	-5043	49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.15470053837925	7	5	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAAGGGACAATGGACCT	2207	False	NA	NA	False	NA	NA	NA	171765152	171776474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171765192_171765568_171765683_171766018_171766049_171766962_171767037_171769191_171769264_171775565_171775643_171776259
82813	chr9	-	1641	4	Antisense	novelGene_ENSMUSG00000049281.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTCCCATTCCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	40201105	40190744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_40190903_40193721_40193859_40199669_40199748_40199837
82814	chr8	+	2010	1	ISM	ENSMUSG00000071064.16	ENSMUST00000098614.9	7581	15	162798	499	12260	52	mono-exon	FALSE	NA	NA	NA	NA	NA	11	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAATAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	79917863	79919873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_79917900_79919900
82815	chr17	-	3160	22	Intergenic	novelGene_112	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCGGGAAACACCTGGC	NA	False	NA	NA	False	NA	NA	NA	28390474	28358009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_28358111_28371364_28371493_28372530_28372657_28374863_28374999_28375733_28375862_28376046_28376162_28379783_28379901_28381287_28381412_28381926_28382043_28382703_28382830_28383016_28383133_28383268_28383376_28383646_28383761_28384032_28384193_28384397_28384616_28384959_28385118_28385325_28385497_28385997_28386162_28386483_28386682_28387102_28387254_28387353_28387434_28390167
82817	chr15	+	722	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	-42	25	-42	6	multi-exon	FALSE	canonical	3	1353	junction_2	125	149	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCGTCCCCATTTCTCA	NA	False	NA	NA	False	NA	NA	NA	82230112	82233266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82230471_82232100_82232242_82233043
82818	chr4	+	1378	4	Antisense	novelGene_ENSMUSG00000042367.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	37	junction_3	21.4165045389453	236	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCATTATTATTATTGTCA	8412	False	NA	NA	False	NA	NA	NA	127223173	127237119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127224096_127225680_127225785_127226134_127226258_127236890
82819	chr8	+	2423	1	Antisense	novelGene_ENSMUSG00000048484.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGTACCGGAAGTCTCT	NA	False	NA	NA	False	NA	NA	NA	4725777	4728200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_4725800_4728200
82820	chr9	-	1210	6	ISM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	31298	1760	-7204	-1760	3prime_fragment	FALSE	canonical	3	198	junction_1	9.53729521405309	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTTTTTTTGTAAAT	NA	False	NA	NA	False	NA	NA	NA	70017562	69997552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539
82821	chrX	+	900	7	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	22	76	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	265.37960233095	741	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTATATGGTAAATAACTC	NA	False	NA	NA	False	NA	NA	NA	37689553	37702379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37697156_37697209_37700631_37700711_37702097
82822	chr14	+	2652	11	ISM	ENSMUSG00000021819.12	ENSMUST00000223840.2	5674	27	10671	7	-81	-6	3prime_fragment	FALSE	canonical	3	31	junction_4	9.3	30	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTATTTTCTGGGTCTT	NA	False	NA	NA	False	NA	NA	NA	20768587	20773680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_20768736_20768827_20768987_20769064_20769294_20769447_20769741_20769880_20770105_20771238_20771728_20771937_20772098_20772210_20772388_20772527_20772648_20772895_20773075_20773206
82823	chr8	+	788	4	ISM	ENSMUSG00000039620.18	ENSMUST00000152039.9	889	6	-179	5990	-179	-5990	5prime_fragment	FALSE	canonical	1	2	junction_3	1.69967317119759	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTGACTACTGTGGGCC	NA	False	NA	NA	False	NA	NA	NA	36925156	36972755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_36925538_36956197_36956400_36965480_36965636_36972705
82824	chr12	+	762	1	FSM	ENSMUSG00000102657.2	ENSMUST00000193116.2	8717	1	5789	2166	5789	-2166	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACCCAAAACAGTAGAT	4578	False	NA	NA	False	NA	NA	NA	109641091	109641853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109641100_109641900
82825	chr16	+	422	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGTTTTTTTTAAATA	NA	False	NA	NA	False	NA	NA	NA	45975018	45975440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45975000_45975400
82826	chr7	-	1232	9	FSM	ENSMUSG00000002984.18	ENSMUST00000032555.10	1646	9	425	-11	425	-5	multi-exon	TRUE	canonical	3	2643	junction_3	135.037899772619	241	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTGGGAGGCCTCGG	9903	False	NA	NA	False	NA	NA	NA	19448925	19435242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905
82827	chr13	-	1325	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6086	145	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	129	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTTAACACACACATAAAAA	4966	False	NA	NA	False	NA	NA	NA	91365992	91083842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
82828	chr1	-	613	1	Antisense	novelGene_ENSMUSG00000038936.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTGTAAAACAGTAAACAGA	3286	False	NA	NA	False	NA	NA	NA	179514750	179514137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_179514100_179514800
82829	chr3	+	2547	4	FSM	ENSMUSG00000042306.12	ENSMUST00000167598.6	1059	4	-1498	10	-1484	1	multi-exon	FALSE	canonical	2	2	junction_1	0.816496580927726	20	61	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTAAAATACGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	90432678	90436134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90434207_90434478_90434601_90435020_90435168_90435384
82830	chr10	+	1381	11	NNC	ENSMUSG00000069565.13	novel	2081	12	NA	NA	-3	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	414.863363048607	1	23	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAGGGTTTAAAAAACGC	NA	False	NA	NA	False	NA	NA	NA	80100904	80123731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116848_80118857_80118986_80120290_80120384_80121083_80121261_80123372
82831	chr7	-	2986	25	ISM	ENSMUSG00000049676.15	ENSMUST00000169143.8	3670	29	47	3422	45	356	5prime_fragment	FALSE	canonical	0	0	junction_1	2.28521820013368	11	37	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTTTGTAGGGTCACC	NA	False	NA	NA	False	NA	NA	NA	28913362	28884384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28884516_28884612_28884677_28884861_28885019_28889234_28889292_28889371_28889453_28889637_28889757_28889861_28890061_28890151_28890215_28890959_28891174_28894638_28894749_28894837_28894997_28895252_28895365_28896399_28896530_28896638_28896690_28897537_28897646_28897773_28897834_28899541_28899680_28901688_28901861_28904191_28904348_28905753_28905827_28905978_28906106_28906229_28906375_28909904_28909959_28910066_28910351_28913340
82832	chr11	-	1820	13	NNC	ENSMUSG00000069855.10	novel	2377	17	NA	NA	5536	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.52505853528448	31	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAGCATTGATAAAATA	NA	False	NA	NA	False	NA	NA	NA	61227874	61192490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_61192648_61192752_61193266_61193526_61193582_61194746_61194842_61198357_61198491_61199691_61199762_61200786_61200863_61201560_61201670_61203615_61203684_61204469_61204584_61216622_61216721_61219353_61219452_61227640
82833	chr5	-	3783	14	ISM	ENSMUSG00000038319.15	ENSMUST00000036092.10	4221	15	3063	41	3063	-41	3prime_fragment	FALSE	canonical	3	15	junction_8	4.87354894198682	13	44	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTATCCTGAGGAGACT	1895	False	NA	NA	False	NA	NA	NA	24553539	24524627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943_24527220_24527652_24527753_24528068_24528263_24529330_24529584_24529953_24530154_24530491_24530880_24531346_24531776_24535908_24536121_24536660_24537111_24537889_24538055_24553308
82834	chr5	-	1189	8	NNC	ENSMUSG00000025855.14	novel	2457	10	NA	NA	-40919	181	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3.20076521462973	2	22	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAGGGCAAGAGGCA	NA	False	NA	NA	False	NA	NA	NA	139050484	139004239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_139004587_139005810_139005893_139022788_139022911_139028189_139028251_139036412_139036572_139048308_139048356_139049010_139049073_139050175
82835	chr13	-	1130	6	NNC	ENSMUSG00000021448.9	novel	1537	12	NA	NA	106666	128	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.35646599662505	30	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTAAGAGAGATGTGAGAC	NA	False	NA	NA	False	NA	NA	NA	51614454	51584948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_51585318_51596725_51597022_51601925_51602085_51603262_51603351_51605525_51605677_51614387
82836	chr10	-	2546	1	Genic_Genomic	ENSMUSG00000020114.13	novel	NA	NA	NA	NA	6430	21	mono-exon	FALSE	NA	NA	NA	NA	NA	32	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTATACTGCAGTAAGT	NA	False	NA	NA	False	NA	NA	NA	119037684	119035138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_119035100_119037700
82837	chr6	+	1501	5	Fusion	ENSMUSG00000107593.2_ENSMUSG00000071332.13	novel	381	5	NA	NA	-4672	-4180	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGGAACGCACACCCAC	NA	False	NA	NA	False	NA	NA	NA	87630063	87649138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_+_87630875_87635822_87635971_87640666_87640840_87645397_87645470_87648841
82838	chr10	-	2186	1	Genic_Genomic	ENSMUSG00000015305.7	novel	NA	NA	NA	NA	32359	2	mono-exon	FALSE	NA	NA	NA	NA	NA	42	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTCTCTGGTTGTTCC	NA	False	NA	NA	False	NA	NA	NA	8600166	8597980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_8598000_8600200
82839	chr1	-	469	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182580.8	473	4	0	4	0	-4	multi-exon	TRUE	canonical	3	370	junction_3	129.892263049036	6956	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGCTGCGGACTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	10014343	10012187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_10012381_10012547_10012617_10012834_10012943_10014244
82840	chrX	+	546	1	Genic_Genomic	ENSMUSG00000086629.9	novel	NA	NA	NA	NA	-17034	1	mono-exon	FALSE	NA	NA	NA	NA	NA	26	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTTGTAACAGACAATGA	NA	False	NA	NA	False	NA	NA	NA	107929957	107930503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_107930000_107930500
82841	chr16	+	1889	1	NIC	ENSMUSG00000097184.3	novel	2428	3	NA	NA	10334	-541	mono-exon	FALSE	NA	NA	NA	NA	NA	5	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGTTAACCTAAAGGCATCT	NA	False	NA	NA	False	NA	NA	NA	29837818	29839707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_29837800_29839700
82842	chr14	+	2068	6	ISM	ENSMUSG00000048502.15	ENSMUST00000173580.8	956	7	892	-1235	-80	56	3prime_fragment	FALSE	canonical	0	0	junction_4	1.01980390271856	6	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGTAGTTGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	25980716	25990568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_25980946_25983911_25983970_25984569_25984725_25987188_25987283_25987891_25988038_25989182
82843	chr2	+	778	3	NNC	ENSMUSG00000027176.9	novel	2817	21	NA	NA	138	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	184	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGGAGTGCTTTAGCCT	7133	False	NA	NA	False	NA	NA	NA	104421100	104439771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104421441_104439215_104439318_104439435
82844	chr5	-	1135	6	ISM	ENSMUSG00000025537.13	ENSMUST00000026617.13	2374	10	4979	2327	1	482	internal_fragment	FALSE	canonical	3	15	junction_4	2.87054001888146	22	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATCCCAGCAACCACAT	NA	False	NA	NA	False	NA	NA	NA	129902945	129894588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_129894912_129895036_129895128_129895702_129895867_129898301_129898368_129902056_129902112_129902509
82845	chr9	+	1237	3	Intergenic	novelGene_1140	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	2.5	108	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTATGGGAAAGCGAAAG	NA	False	NA	NA	False	NA	NA	NA	97157791	97164343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_97157969_97160761_97160997_97163518
82846	chr14	-	646	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	-48	-172	5	-2	multi-exon	FALSE	canonical	3	53	junction_1	0	343	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTTGATTTCAGCCATT	NA	False	NA	NA	False	NA	NA	NA	30850908	30846463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_30846791_30850589
82847	chr5	-	2027	1	Antisense	novelGene_ENSMUSG00000066613.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	36	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGAGCACCCTCCACA	NA	False	NA	NA	False	NA	NA	NA	110146504	110144477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_110144500_110146500
82848	chr5	+	727	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	60	-141	-11	141	multi-exon	FALSE	canonical	3	1103	junction_2	77.5471182930453	5447	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAAATACTCACTGGTA	9272	False	NA	NA	False	NA	NA	NA	136145544	136151942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
82849	chr3	+	2073	18	NIC	ENSMUSG00000038777.20	novel	3933	20	NA	NA	0	-304	combination_of_known_junctions	TRUE	canonical	3	19	junction_2	24.3473991989055	10	36	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTTATGGTGAGTTCT	NA	False	NA	NA	False	NA	NA	NA	95067804	95078902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95068024_95069925_95069975_95071649_95071825_95074316_95074432_95074723_95074788_95074934_95074992_95075309_95075412_95075609_95075701_95075897_95076018_95076119_95076209_95076474_95076693_95076892_95077025_95077298_95077452_95077628_95077803_95078061_95078209_95078483_95078562_95078644_95078701_95078868
82850	chr8	-	2760	22	ISM	ENSMUSG00000037148.9	ENSMUST00000076316.6	3084	23	67030	0	66860	0	3prime_fragment	FALSE	canonical	3	15	junction_7	6.0523041469781	12	42	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTGTCCGGCCTAAT	NA	False	NA	NA	False	NA	NA	NA	78177552	77976994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_77977637_77983954_77984047_77985685_77985839_78003776_78003937_78037359_78037511_78071268_78071429_78072900_78073007_78078242_78078302_78085175_78085264_78091714_78091790_78109353_78109420_78111379_78111426_78115282_78115365_78136176_78136272_78137650_78137758_78140126_78140257_78146700_78146806_78147265_78147377_78152958_78153061_78159368_78159441_78177321_78177384_78177456
82851	chr11	+	1297	2	NNC	ENSMUSG00000092626.2	novel	663	2	NA	NA	944	167	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	34	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAGCTGGCAAGCAACAG	NA	False	NA	NA	False	NA	NA	NA	22809874	22811431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22810580_22810839
82852	chr17	-	703	4	FSM	ENSMUSG00000024309.16	ENSMUST00000025163.14	807	4	6	98	-6	0	multi-exon	FALSE	canonical	3	1067	junction_1	64.8194072447099	4631	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	34159311	34157892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997
82853	chr14	-	1535	1	Intergenic	novelGene_603	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATCTATTTTGGGGTGA	6180	False	NA	NA	False	NA	NA	NA	70050812	70049277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_70049300_70050800
82854	chr19	-	1026	1	Intergenic	novelGene_1250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAATTTATCTCCATCAT	NA	False	NA	NA	False	NA	NA	NA	38308797	38307771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_38307800_38308800
82855	chr7	-	1598	5	FSM	ENSMUSG00000040498.8	ENSMUST00000043440.8	1908	5	221	89	38	-89	multi-exon	FALSE	canonical	0	0	junction_3	4.60977222864644	59	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTGTACACTTTGTAA	8449	False	NA	NA	False	NA	NA	NA	19684460	19671318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_19672176_19673097_19673268_19675674_19675945_19678628_19678839_19684369
82856	chr3	+	389	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	-32	-36	-32	36	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTCAAAAAAAAAAAAAAAAA	8269	False	NA	NA	False	NA	NA	NA	145584742	145585131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145584700_145585100
82857	chr14	+	978	3	NIC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	396	117	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3	87	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATCACATTCCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	76915489	76924726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_76915820_76917565_76917761_76924273
82858	chr6	+	2126	4	Antisense	novelGene_ENSMUSG00000032757.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCGTCACTCGGACACAT	NA	False	NA	NA	False	NA	NA	NA	4077881	4086947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_4078036_4079959_4081636_4082457_4082581_4086774
82859	chr10	+	1628	3	Antisense	novelGene_ENSMUSG00000020137.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACACAAGGGCGAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	115207996	115220686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_115208855_115212259_115212451_115220107
82860	chr2	-	2192	1	ISM	ENSMUSG00000061136.17	ENSMUST00000076313.14	7374	26	54330	0	8414	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTTTCTCTTTAAGTGT	NA	False	NA	-56	True	NA	NA	NA	53026907	53024715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_53024700_53026900
82861	chr18	+	769	4	NNC	ENSMUSG00000098098.8	novel	588	3	NA	NA	-520	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	31.3723161756065	368	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGACTTTCTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	61772092	61780545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61772152_61772603_61772840_61778233_61778437_61780274
82862	chr15	-	4728	1	Intergenic	novelGene_3334	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	71	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGGCTCCAACAAGATAAA	NA	False	NA	NA	False	NA	NA	NA	83285152	83280424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_83280400_83285200
82863	chr8	+	1140	7	Genic_Genomic	ENSMUSG00000110575.2	novel	1642	1	NA	NA	-3818	-1408	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1110	5	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCCAGCCTCCAGTCC	NA	False	NA	NA	False	NA	NA	NA	71215404	71219456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_71215681_71215767_71215827_71216371_71216527_71217192_71217284_71217362_71217437_71217560_71217741_71219151
82864	chr7	-	913	2	FSM	ENSMUSG00000038489.9	ENSMUST00000043870.9	1650	2	-213	950	-213	-950	multi-exon	FALSE	canonical	3	1072	junction_1	0	5372	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATGCTGAGCGTGCTTGG	7787	False	NA	NA	False	NA	NA	NA	141055258	141052722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141053318_141054940
82865	chr10	+	1360	2	Intergenic	novelGene_3407	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGAGGCGGGGCCTCGGG	NA	False	NA	NA	False	NA	NA	NA	21930760	21934531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_21931019_21933429
82866	chr7	+	1698	5	NNC	ENSMUSG00000045467.14	novel	2723	14	NA	NA	9367	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7.8541390362025	8	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCGTGCTGTACCTCCTT	NA	False	NA	NA	False	NA	NA	NA	79906502	79910567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_79906779_79907924_79908106_79908390_79908571_79909127_79909442_79909820
82867	chr2	-	1872	1	Intergenic	novelGene_2683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGATTTCCTTTACTAGA	NA	False	NA	NA	False	NA	NA	NA	113667181	113665309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_113665300_113667200
82868	chr12	-	1840	1	Intergenic	novelGene_4327	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATCCCATGACAAAATCCC	NA	False	NA	NA	False	NA	NA	NA	23051347	23049507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23049500_23051300
82869	chr16	-	921	8	NNC	ENSMUSG00000022938.9	novel	806	8	NA	NA	85	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	14.6941609949986	3	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	97313645	97272289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313457
82870	chr14	+	681	1	ISM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	5618	0	5594	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	6010	False	NA	NA	False	NA	NA	NA	25700211	25700892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_25700200_25700900
82871	chr7	+	508	2	NNC	ENSMUSG00000097320.9	novel	1276	6	NA	NA	59	-6871	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAAGCGTGAGCTTTCTGT	585	False	NA	NA	False	NA	NA	NA	30429062	30430053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30429280_30429762
82872	chr10	+	742	1	ISM	ENSMUSG00000035011.16	ENSMUST00000048128.15	5938	3	12578	2632	10896	1132	mono-exon	FALSE	NA	NA	NA	NA	NA	60	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCTCCGGTAGAATCCACT	NA	False	NA	NA	False	NA	NA	NA	80984682	80985424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80984700_80985400
82873	chr1	-	1766	6	FSM	ENSMUSG00000026158.12	ENSMUST00000186064.7	2926	6	1798	-638	1798	638	multi-exon	FALSE	canonical	3	39	junction_5	8.81816307401944	24	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGTATTGTTTAGAAAG	NA	False	NA	NA	False	NA	NA	NA	23418084	23408166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_23409530_23414810_23414957_23415068_23415136_23415251_23415331_23417806_23417886_23418052
82874	chr1	+	837	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	-284	-82	-284	82	multi-exon	FALSE	canonical	3	422	junction_3	43.5150037981793	1401	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTCCCAAGGTGTCAGCT	NA	False	NA	NA	False	NA	NA	NA	178146410	178150340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
82875	chr9	-	2002	15	Fusion	ENSMUSG00000093619.2_ENSMUSG00000093749.2	novel	1186	2	NA	NA	-3069	-669	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTCCGCTGTTTCCAGT	NA	False	NA	NA	False	NA	NA	NA	107875924	107869551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_107869771_107870041_107870229_107870330_107870494_107870573_107870659_107871469_107871576_107872173_107872280_107872448_107872584_107872779_107872966_107873066_107873219_107873434_107873531_107873795_107873999_107874078_107874218_107875116_107875260_107875710_107875767_107875898
82876	chr7	+	3161	1	Intergenic	novelGene_3022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	89	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGCATGCTTTTCTGAA	4056	False	NA	NA	False	NA	NA	NA	112358887	112362048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_112358900_112362000
82877	chr4	-	1804	1	Antisense	novelGene_ENSMUSG00000028211.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATACAGTGGTCCAGTGAA	NA	False	NA	NA	False	NA	NA	NA	11168082	11166278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_11166300_11168100
82878	chr9	-	1599	4	FSM	ENSMUSG00000040433.17	ENSMUST00000130078.8	2341	4	-21	763	-13	-763	multi-exon	FALSE	canonical	1	1	junction_2	0.942809041582063	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCCCTTTCCTTTCAGC	2503	False	NA	NA	False	NA	NA	NA	96634759	96612666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96613796_96614300_96614367_96633354_96633437_96634437
82879	chr18	-	2890	24	ISM	ENSMUSG00000024598.10	ENSMUST00000025497.8	11041	65	152018	14653	-22491	1825	internal_fragment	FALSE	canonical	0	0	junction_6	1.9051219391484	4	38	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAAAGCCATGCAACTT	NA	False	NA	NA	False	NA	NA	NA	58191541	58156347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_58156368_58158097_58158224_58159403_58159611_58160888_58161015_58168344_58168477_58168918_58169042_58170033_58170154_58170773_58170900_58171271_58171338_58172379_58172533_58173145_58173272_58176564_58176685_58177270_58177400_58178340_58178458_58180996_58181123_58181606_58181733_58181872_58181999_58183282_58183352_58186014_58186168_58186720_58186847_58187897_58188024_58188485_58188555_58189266_58189429_58191425
82881	chr8	-	805	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	41	3	4	-3	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	12	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGCTGCTTCTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	123303588	123301378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
82882	chr10	+	678	2	NNC	ENSMUSG00000025410.11	novel	1784	14	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	32	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAGTTTCAAAATATTCT	9213	False	NA	NA	False	NA	NA	NA	127102252	127117823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127102404_127117296
82883	chr4	-	1321	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	13	354	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	6.01331855134916	39	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTCCTTCCCTCAGCCTT	NA	False	NA	NA	False	NA	NA	NA	94365391	94348813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_94349585_94350122_94350199_94352666_94352793_94353653_94353778_94356020_94356103_94365249
82884	chr9	-	1651	1	Genic_Genomic	ENSMUSG00000105948.2	novel	NA	NA	NA	NA	811	1249	mono-exon	FALSE	NA	NA	NA	NA	NA	2	85	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAAGCATCTATAGGGCC	NA	False	NA	NA	False	NA	NA	NA	109371170	109369519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_109369500_109371200
82885	chr6	+	1140	2	NIC	ENSMUSG00000014747.7	novel	1243	5	NA	NA	-883	-4596	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGGTAGGGGGATAAAGG	NA	False	NA	NA	False	NA	NA	NA	83738742	83740423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_83739043_83739583
82886	chr18	-	1105	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	-2	1	-2	-1	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	346	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAACCTTATGTGTAT	NA	False	NA	NA	False	NA	NA	NA	80280050	80272973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
82887	chr3	-	1229	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	38	4	2	0	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	760	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACGTTTATTGAACGGAA	NA	False	NA	NA	False	NA	NA	NA	129625007	129618564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
82888	chr5	+	1745	5	ISM	ENSMUSG00000054920.13	ENSMUST00000204348.3	3380	10	27840	68	2846	-32	3prime_fragment	FALSE	canonical	3	37	junction_4	9.06917857360853	23	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATACAAACTAAAGTCCCA	NA	False	NA	NA	False	NA	NA	NA	65316258	65325417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65316352_65318384_65318548_65320132_65320346_65321873_65322046_65324313
82889	chr8	-	1095	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	76	-3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	130.874834182215	9	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATAGGCGTCTCAGTGAC	730	False	NA	NA	False	NA	NA	NA	71085030	71082046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71082539_71082711_71082825_71083982_71084242_71084799
82890	chr12	+	2641	2	FSM	ENSMUSG00000047414.7	ENSMUST00000110117.2	3223	2	85	497	85	-497	multi-exon	FALSE	canonical	3	13	junction_1	0	2	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGAAGTGGAAATACAACC	NA	False	NA	NA	False	NA	NA	NA	95662215	95747384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_95662753_95745280
82891	chr5	-	1431	4	Antisense	novelGene_ENSMUSG00000040274.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	14	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATACTATTAGAAAATAC	NA	False	NA	NA	False	NA	NA	NA	3391852	3339655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_3340456_3364586_3364785_3380206_3380285_3391497
82892	chr7	+	1749	9	NNC	ENSMUSG00000054793.9	novel	2161	9	NA	NA	-779	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	20.573040611441	1	47	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACAAGTATGGGGTGGC	NA	False	NA	NA	False	NA	NA	NA	24198606	24203955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24198728_24198937_24199091_24199348_24199484_24199900_24200066_24200156_24200248_24200989_24201163_24202090_24202220_24202936_24203079_24203315
82893	chr12	+	1809	3	Antisense	novelGene_ENSMUSG00000021061.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTCCCGGCTGGCCAG	NA	False	NA	NA	False	NA	NA	NA	76642922	76645473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_76644575_76645057_76645109_76645367
82894	chr1	+	2050	1	ISM	ENSMUSG00000040423.12	ENSMUST00000239200.2	11121	21	64015	2496	19456	-2496	mono-exon	FALSE	NA	NA	NA	NA	NA	11	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTCATCCCTGAAGATAG	5784	False	NA	NA	False	NA	NA	NA	160798002	160800052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_160798000_160800100
82895	chr7	+	746	7	NNC	ENSMUSG00000078765.12	novel	781	7	NA	NA	2	-45	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	222.058113014489	2	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGAACCTCCTCCTCCTG	NA	False	NA	NA	False	NA	NA	NA	30262776	30264731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264081_30264519
82896	chr11	+	991	3	FSM	ENSMUSG00000001240.14	ENSMUST00000122006.8	899	3	-97	5	20	-5	multi-exon	FALSE	canonical	2	5	junction_2	3	34	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATATTGCCTTCCTAGT	NA	False	NA	NA	False	NA	NA	NA	101137157	101139071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101137399_101137880_101137971_101138411
82897	chr6	-	649	4	FSM	ENSMUSG00000030042.16	ENSMUST00000161309.8	457	4	8	-200	8	200	multi-exon	FALSE	canonical	3	132	junction_1	435.143909784134	309	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCATTGTTATGTCTCC	6117	False	NA	NA	False	NA	NA	NA	82682338	82595772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_82596120_82628417_82628460_82629063_82629149_82682163
82898	chr13	+	1358	2	FSM	ENSMUSG00000089875.3	ENSMUST00000162450.3	4862	2	38	3466	38	-166	multi-exon	FALSE	canonical	0	0	junction_1	0	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCAGAAAGGCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	59917817	59919755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_59918161_59918740
82899	chr6	+	715	3	NNC	ENSMUSG00000046679.17	novel	505	2	NA	NA	38	55	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	5.5	141	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAAAGTCTTTTCTAAAA	1506	False	NA	NA	False	NA	NA	NA	86415408	86416525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86415470_86415591_86415830_86416109
82900	chr19	+	773	5	NNC	ENSMUSG00000056612.8	novel	999	4	NA	NA	-12	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1585.78424998485	438	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTTGGCTGGTCTTTTA	1568	False	NA	NA	False	NA	NA	NA	6952323	6954692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6952380_6952728_6952986_6953911_6953996_6954225_6954259_6954349
82901	chr4	+	1553	5	Antisense	novelGene_ENSMUSG00002075553.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTAAGCATTCTAAATACG	NA	False	NA	NA	False	NA	NA	NA	16122756	16132851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_16123892_16124424_16124586_16127619_16127714_16129021_16129110_16132776
82902	chr15	-	2001	6	ISM	ENSMUSG00000022629.18	ENSMUST00000109287.4	5988	33	107618	2	9106	-2	3prime_fragment	TRUE	canonical	3	8	junction_4	3.54400902933387	7	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTATTATACTAGTCTTT	3414	False	NA	NA	False	NA	NA	NA	90826403	90817486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_90818747_90819837_90820038_90821363_90821535_90823187_90823306_90824633_90824799_90826316
82903	chr5	-	762	3	Intergenic	novelGene_695	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_2	5.5	28	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGGCTTGAACTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	33692824	33641845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_33642377_33643280_33643446_33692758
82904	chr15	+	556	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	46	-1	46	1	multi-exon	FALSE	canonical	3	181	junction_1	282.916948944385	6360	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCTATTCAATGTCTTG	178	False	NA	NA	False	NA	NA	NA	36174224	36177157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
82905	chr4	+	1140	4	ISM	ENSMUSG00000028246.14	ENSMUST00000123481.2	4465	5	5293	2835	5293	-142	3prime_fragment	FALSE	canonical	2	7	junction_2	4.08248290463863	8	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAGGAGCTCATGTCCCT	4944	False	NA	NA	False	NA	NA	NA	21936649	21994004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_21936769_21948691_21948889_21982385_21982503_21993297
82906	chr4	-	1819	5	NNC	ENSMUSG00000040761.17	novel	12082	15	NA	NA	-4876	-5358	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	11.3440513045384	5	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTCCATCCCAAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	141249096	141217261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141217309_141220706_141220908_141221548_141221710_141244146_141244630_141248169
82908	chr13	-	1450	5	ISM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	12	12368	1	7635	5prime_fragment	FALSE	canonical	3	275	junction_1	7.29297607290741	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCATGTAGTTGAGACTAT	NA	False	NA	NA	False	NA	NA	NA	81859120	81834329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
82909	chr5	-	711	2	Genic_Genomic	ENSMUSG00000073147.4	novel	2110	1	NA	NA	-23	-1190	multi-exon	FALSE	canonical	0	0	junction_1	0	39	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGTAAGAGGAGTGGGGAG	NA	False	NA	NA	False	NA	NA	NA	23639290	23638474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_23639028_23639132
82910	chr7	+	718	1	NIC	ENSMUSG00000035674.14	novel	515	4	NA	NA	113	502	mono-exon	FALSE	NA	NA	NA	NA	NA	124	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGGTGTGTGTGTGTGTG	386	False	NA	NA	False	NA	NA	NA	3620502	3621220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_3620500_3621200
82911	chr1	+	1550	2	Intergenic	novelGene_355	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	12	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCTGCTTTGTATGGGT	NA	False	NA	NA	False	NA	NA	NA	36026674	36032638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_36026768_36031181
82912	chr9	-	1590	7	FSM	ENSMUSG00000032360.17	ENSMUST00000184757.2	2230	7	254	386	9	-386	multi-exon	FALSE	canonical	0	0	junction_1	1.06718737290547	3	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCCTGAACCATTTACTC	NA	False	NA	NA	False	NA	NA	NA	76230884	76137621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_76138009_76140181_76140304_76143450_76143672_76153628_76153745_76161742_76161987_76166933_76167113_76230563
82913	chr15	+	1688	1	Antisense	novelGene_ENSMUSG00000086903.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTCACTTTTAGTTTCC	NA	False	NA	NA	False	NA	NA	NA	102851353	102853041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_102851400_102853000
82914	chr12	-	1531	11	Antisense	novelGene_ENSMUSG00000021278.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	13	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCCCCACCGCGGCGTTC	NA	False	NA	NA	False	NA	NA	NA	111242671	111238045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_111238248_111238329_111238375_111240574_111240662_111240790_111241007_111241138_111241279_111241383_111241492_111241584_111241670_111241774_111241925_111242003_111242189_111242269_111242359_111242447
82915	chr14	-	1491	3	FSM	ENSMUSG00000097577.3	ENSMUST00000180987.2	1554	3	40	23	40	-23	multi-exon	FALSE	canonical	2	8	junction_1	0	77	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTACAGGTGTAAACCTC	NA	False	NA	NA	False	NA	NA	NA	20753040	20737326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20738682_20738832_20738908_20752979
82916	chr7	+	746	2	ISM	ENSMUSG00000100254.2	ENSMUST00000124189.3	2874	13	11997	-18	11997	18	3prime_fragment	FALSE	canonical	1	1	junction_1	0	7	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGGTAGTCTCCATCT	NA	False	NA	NA	False	NA	NA	NA	101744319	101745621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_101744508_101745063
82917	chr9	+	611	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	29	5	-25	-5	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	18271	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAATTAGGTCTTGTGAT	406	False	NA	NA	False	NA	NA	NA	57428590	57439704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
82918	chr19	+	889	1	Intergenic	novelGene_1198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCTTTAAAAAAATAATAATA	NA	False	NA	NA	False	NA	NA	NA	5623469	5624358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_5623500_5624400
82919	chr5	+	1220	7	NNC	ENSMUSG00000029614.14	novel	486	4	NA	NA	-99624	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6114.48852226324	45970	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	9773	False	NA	NA	False	NA	NA	NA	121242919	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121243217_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
82920	chrM	+	857	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	98	0	98	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19630	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTGTAGCTTAATATTA	55	False	NA	-11	True	NA	NA	NA	167	1024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_200_1000
82921	chrM	+	856	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	98	1	98	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	600	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	55	False	NA	-11	True	NA	NA	NA	167	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_200_1000
82922	chrM	+	856	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	98	1	98	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	13520	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	55	False	NA	-11	True	NA	NA	NA	167	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_200_1000
82923	chr3	-	1034	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	-71	-78	71	mono-exon	FALSE	NA	NA	NA	NA	NA	556	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	149779257	149778223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778200_149779300
82924	chr9	+	758	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-224	-44	224	mono-exon	FALSE	NA	NA	NA	NA	NA	87489	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
82925	chrX	-	484	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	-24	-52	-24	52	mono-exon	FALSE	NA	NA	NA	NA	NA	10156	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATACCTCGTGCTGCAAA	NA	False	NA	NA	False	NA	NA	NA	51861650	51861166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51861200_51861600
82926	chr15	+	1046	2	Genic_Genomic	ENSMUSG00000025922.10	novel	810	1	NA	NA	-11	33873	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9052	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAGTAAAAAGTCATAT	NA	False	NA	NA	False	NA	NA	NA	59082745	59117439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_59083606_59117253
82928	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-38	-224	-38	224	mono-exon	FALSE	NA	NA	NA	NA	NA	731	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777672	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
82929	chr17	+	1941	3	FSM	ENSMUSG00000023067.15	ENSMUST00000119901.9	922	3	0	-1019	0	-2	multi-exon	FALSE	canonical	3	83	junction_1	538	1626	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAATGTCTTGTCATTA	1857	False	NA	NA	False	NA	NA	NA	29309952	29319694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29310076_29317370_29317812_29318317
82930	chr5	-	731	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	181	3	-16	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	360	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2245	False	NA	NA	False	NA	NA	NA	129916130	129909999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
82931	chr10	-	4239	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	44	-2751	-24	1311	multi-exon	FALSE	canonical	3	2101	junction_1	71	287	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAATTGTGCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	30076512	30069253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_30073223_30074461_30074576_30076356
82932	chr9	+	756	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-222	-44	222	mono-exon	FALSE	NA	NA	NA	NA	NA	2819	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAGCACCTGACACAAAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
82933	chr17	+	1956	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	-45	2	-45	-2	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	2471	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAATGTCTTGTCATTA	4602	False	NA	NA	False	NA	NA	NA	29312697	29319694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29312836_29317370_29317812_29318317
82934	chr17	+	2062	3	NNC	ENSMUSG00000023067.15	novel	2080	3	NA	NA	243	-2	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	570.5	88	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAATGTCTTGTCATTA	4902	False	NA	NA	False	NA	NA	NA	29312997	29319694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29313242_29317370_29317812_29318317
82935	chr2	+	1043	10	Antisense	novelGene_ENSMUSG00000077733.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2014	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGCGCGTGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	10060886	10085243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_10060967_10061574_10061621_10063808_10063904_10064311_10064471_10068099_10068160_10068251_10068397_10068916_10069123_10073420_10073553_10074503_10074538_10085157
82936	chr5	-	1622	6	Genic_Genomic	ENSMUSG00000057244.7	novel	882	1	NA	NA	-281076	1242	multi-exon	FALSE	non_canonical	0	0	junction_1	0	429744	35	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129982011	129698811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_129699002_129699993_129700979_129782540_129782704_129839903_129839960_129928602_129928655_129981835
82937	chr2	+	1083	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	155	4	-6	-4	multi-exon	FALSE	canonical	3	2580	junction_6	1457.06650690885	563	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGCAATTGTTGGGGC	5796	False	NA	NA	False	NA	NA	NA	32851725	32854504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
82938	chr18	-	1451	4	Intergenic	novelGene_4529	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	224514	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACCCCTGCCCGGAAGT	NA	False	NA	NA	False	NA	NA	NA	35750235	35731689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_35731812_35743922_35744088_35746375_35746555_35749250
82939	chr11	-	1010	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	41	0	-6	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	31375	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427061	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
82940	chr7	-	831	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	88	989	0	-3	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	114264	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8423	False	NA	NA	False	NA	NA	NA	99132857	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
82941	chr7	-	964	9	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	4	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5655.93367071255	23	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778155	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775252_44775299_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
82942	chr15	-	1727	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	43	83	-21	-83	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	113	40	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	31601907	31591028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
82943	chr5	+	1005	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	991	-21	-36	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	250	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTCATAAAGACAATAA	NA	False	NA	NA	False	NA	NA	NA	108048416	108055880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
82944	chr9	-	599	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	20	0	20	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	35	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	NA	NA	NA	78275439	78274333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
82945	chr4	+	936	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	55	1303	0	247	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	322497	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTCATTCTTTAAAGGC	NA	False	NA	NA	False	NA	NA	NA	116542795	116556716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
82946	chr4	-	1000	3	Genic_Genomic	ENSMUSG00000083757.3_ENSMUSG00000081394.2	novel	502	1	NA	NA	22	38	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1916	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTACTGTATGGGATAAT	9934	False	NA	NA	False	NA	NA	NA	131947778	131875685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_131876126_131898954_131899037_131947300
82947	chr12	+	5223	24	NNC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-2	49766	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	176.9026304008	36	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCGGCGCTCGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	21366412	21423586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289_21375628_21376119_21376171_21378047_21378137_21379055_21379133_21380032_21380161_21382078_21382216_21382578_21382675_21383954_21384152_21386627_21386786_21390471_21390562_21390675_21390821_21392864_21392979_21395621_21395714_21397298_21397451_21399785_21399955_21401543_21401628_21403878_21404013_21411657_21411793_21423336
82948	chr18	+	1451	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	20	4	-4	-1	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	50	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCTGGTGCTTGTGTTA	4660	False	NA	NA	False	NA	NA	NA	35731689	35750235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
82949	chr18	+	1451	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	20	4	-4	-1	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	2800	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCTGGTGCTTGTGTTA	4660	False	NA	NA	False	NA	NA	NA	35731689	35750235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
82950	chr12	+	5173	25	NNC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-2	49767	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	174.166661682616	249	65	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCGGCGCTCGCTGAGAG	NA	False	NA	NA	False	NA	NA	NA	21366412	21423587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289_21374352_21374392_21375628_21376119_21376170_21378044_21378137_21379055_21379133_21380032_21380165_21382076_21382210_21382569_21382675_21383954_21384155_21386633_21386786_21390471_21390564_21390676_21390821_21392864_21392979_21395621_21395714_21397298_21397432_21399785_21399955_21401543_21401628_21403878_21404013_21411657_21411793_21423336
82951	chr8	+	708	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	-26	-91	-26	91	mono-exon	FALSE	NA	NA	NA	NA	NA	1037	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGGGACTCAGAGCT	7091	False	NA	NA	False	NA	NA	NA	19542925	19543633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_19542900_19543600
82952	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	1294	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
82953	chrX	-	933	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	41	1	-17	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	1625	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232959	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
82954	chr2	-	1715	3	Fusion	ENSMUSG00000080374.3_ENSMUSG00000046110.16	novel	1059	3	NA	NA	-1482	1302	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCCTTCGCGCGACGCCA	7570	False	NA	NA	False	NA	NA	NA	121282733	121279848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_121279923_121280455_121280563_121281199
82955	chr5	+	946	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	271	-12	4	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	1538	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTCCTTTTTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
82956	chr7	-	831	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	88	989	0	-3	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8423	False	NA	NA	False	NA	NA	NA	99132857	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
82957	chr15	-	1759	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	11	83	11	-83	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	65602	41	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	31601939	31591028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
82958	chr4	-	865	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	20	-52	20	52	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	1849	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTGTCCCTTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	135780684	135776989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
82959	chr15	-	1707	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	63	83	-1	-83	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	101647	40	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCGTCTGCAGTTACTG	NA	False	NA	NA	False	NA	NA	NA	31601887	31591028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
82960	chr2	-	1377	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	682571	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3759	False	NA	NA	False	NA	NA	NA	154734728	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
82961	chr18	-	967	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	13	-15	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	888	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATCTTGGA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
82962	chrM	+	1157	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	459	-71	459	71	mono-exon	FALSE	NA	NA	NA	NA	NA	233807	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	9	True	NA	97	True	NA	NA	NA	5786	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
82963	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	1176639	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
82964	chr11	+	892	7	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	-2	4202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6015.48458609575	109226	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCCTCACTGCCTGAGT	NA	False	NA	NA	False	NA	NA	NA	97917780	97925520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096_97921296_97925325
82965	chr1	+	4149	27	Fusion	ENSMUSG00000084799.8_ENSMUSG00000025967.17	novel	1939	6	NA	NA	28858	16287	multi-exon	TRUE	non_canonical	0	0	junction_1	1264.89207680985	785	47	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATAAAATAGCGCTATTA	4286	False	NA	NA	False	NA	NA	NA	63182756	63235932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_63183082_63186278_63186343_63186440_63186584_63187554_63187730_63189114_63189273_63190711_63190868_63191930_63192064_63195362_63195492_63196290_63196437_63198908_63199022_63200036_63200174_63202825_63203010_63203886_63204017_63204103_63204192_63205451_63205525_63208385_63208495_63209207_63209301_63210007_63210074_63211312_63211416_63215843_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218845_63223388_63223631_63235828
82966	chr2	-	5689	4	Fusion	ENSMUSG00000080374.3_ENSMUSG00000046110.16	novel	1059	3	NA	NA	-47	47637	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2808	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTTGTTTTTCAAGACA	3938	False	NA	NA	False	NA	NA	NA	121286365	121221902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_121222218_121279821_121279923_121280455_121280563_121281199
82967	chr2	-	1377	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	800844	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3759	False	NA	NA	False	NA	NA	NA	154734728	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
82968	chr7	-	984	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	0	35	0	18	mono-exon	FALSE	NA	NA	NA	NA	NA	6582	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTCATAAAGACAATAA	NA	False	NA	NA	False	NA	NA	NA	114305470	114304486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114304500_114305500
82969	chr2	+	5347	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	173	-2464	0	-2427	multi-exon	FALSE	canonical	3	5931	junction_1	722	7647	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGACAGTCTCAACTTT	NA	False	NA	NA	False	NA	NA	NA	121279848	121286365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121279923_121280455_121280565_121281201
82970	chr7	-	925	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	-270	6	-270	-6	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	46860	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACAGGCTTGGAGTCTCA	NA	False	NA	NA	False	NA	NA	NA	44774133	44771808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
82971	chr2	+	1288	2	Genic_Genomic	ENSMUSG00000081434.4	novel	952	1	NA	NA	-76	379	multi-exon	FALSE	non_canonical	0	0	junction_1	0	448358	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152195458	152196865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_152196554_152196672
82972	chr2	-	711	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	58	-1	-5	1	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	15439	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTCTGATCCTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	32178022	32168826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
82973	chrX	+	1480	10	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	-9	-119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1484.6556652788	41045	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAAAGGCTGAGCTCTC	NA	False	NA	NA	False	NA	NA	NA	105230759	105247148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230930_105238052_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
82974	chr4	-	856	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	20	-43	20	43	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	625	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCCCAGCAGGTGTCCC	NA	False	NA	NA	False	NA	NA	NA	135780684	135776998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
82975	chr7	-	925	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	-270	6	-270	-6	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	18808	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACAGGCTTGGAGTCTCA	NA	False	NA	NA	False	NA	NA	NA	44774133	44771808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
82976	chr1	+	4089	25	Fusion	ENSMUSG00000084799.8_ENSMUSG00000025967.17	novel	1939	6	NA	NA	28858	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	1303.47795912726	3020	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAATACATCACAG	4286	False	NA	NA	False	NA	NA	NA	63182756	63219633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_63183082_63186278_63186352_63186448_63186584_63187554_63187730_63189114_63189273_63190711_63190868_63191930_63192064_63195362_63195492_63196290_63196437_63198908_63199022_63200036_63200174_63202825_63203010_63203886_63204025_63204110_63204192_63205451_63205525_63208385_63208495_63209207_63209301_63210007_63210074_63215586_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218808_63219466
82977	chr9	+	758	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-224	-44	224	mono-exon	FALSE	NA	NA	NA	NA	NA	259840	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
82978	chr2	+	5688	5	NNC	ENSMUSG00000074884.13	novel	3056	3	NA	NA	-22267	-2427	intron_retention	FALSE	non_canonical	0	0	junction_1	3365.44859565556	4403	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGACAGTCTCAACTTT	NA	False	NA	NA	False	NA	NA	NA	121257408	121286365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121257603_121267065_121267223_121279858_121279923_121280455_121280565_121281201
82979	chr14	+	1788	9	FSM	ENSMUSG00000021996.17	ENSMUST00000022573.17	1988	9	60	140	0	-140	multi-exon	FALSE	canonical	3	1089	junction_1	102.16133074701	6886	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTAGCCTGCTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	74969796	74988065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
82980	chr11	+	861	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	304	5	-121	0	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	890	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTGTCCTTGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	6365746	6369812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
82981	chr11	+	743	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	425	2	0	0	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	2078	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTGTTTGTATTGG	NA	False	NA	NA	False	NA	NA	NA	6365867	6369815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
82982	SIRV6	+	1221	8	NIC	SIRV6A	novel	1163	5	NA	NA	-1	0	intron_retention	FALSE	canonical	0	0	junction_3	9646.91150956975	715	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1302	11331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV6_+_1382_1468_1535_1640_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
82983	chr9	-	1102	2	Genic_Genomic	ENSMUSG00000082465.2	novel	750	1	NA	NA	-1901	88	multi-exon	TRUE	non_canonical	0	0	junction_1	0	627	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACACCAATGGTAAGTTAT	6864	False	NA	NA	False	NA	NA	NA	53603484	53600745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_53601646_53603282
82984	chr11	+	892	7	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	-2	4202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6015.48458609575	50739	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCCTCACTGCCTGAGT	NA	False	NA	NA	False	NA	NA	NA	97917780	97925520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096_97921296_97925325
82985	chr19	-	708	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	1	5	1	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	202	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATGTTAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	32443977	32443269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_32443300_32444000
82986	chr2	+	1593	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	8	95	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	232923	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
82987	chr1	+	3859	26	Fusion	ENSMUSG00000084799.8_ENSMUSG00000025967.17	novel	1939	6	NA	NA	28856	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	1283.81403263868	15324	37	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATCACAGCAGTTTCAGC	4284	False	NA	NA	False	NA	NA	NA	63182754	63219643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_63183082_63186278_63186340_63186436_63186588_63187559_63187730_63189114_63189273_63190711_63190868_63191930_63192064_63195362_63195492_63196290_63196437_63198908_63199022_63200036_63200174_63202825_63203010_63203886_63204017_63204103_63204192_63205451_63205525_63208385_63208495_63209207_63209301_63210007_63210074_63215586_63215681_63215920_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218808_63219466
82988	chr2	+	5516	4	NNC	ENSMUSG00000074884.13	novel	3056	3	NA	NA	-22267	-2427	intron_retention	FALSE	non_canonical	0	0	junction_1	3191.17745598009	128	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGACAGTCTCAACTTT	NA	False	NA	NA	False	NA	NA	NA	121257408	121286365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121257588_121279858_121279923_121280455_121280565_121281201
82989	SIRV6	-	785	3	Antisense	novelGene_SIRV6A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8871	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAACGTCGTTACCCATGT	NA	False	NA	NA	False	NA	NA	NA	11330	10237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV6_-_10825_11035_11109_11205
82990	chr1	+	1298	7	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-34	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1207.01455620423	24	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTTAAAAAAATACATC	NA	False	NA	NA	False	NA	NA	NA	63215949	63219629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218808_63219466
82991	chr2	+	5347	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	173	-2464	0	-2427	multi-exon	FALSE	canonical	3	5931	junction_1	722	113	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGGACAGTCTCAACTTT	NA	False	NA	NA	False	NA	NA	NA	121279848	121286365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121279923_121280455_121280565_121281201
82992	chr11	-	755	6	NNC	ENSMUSG00000006057.16	novel	596	5	NA	NA	4	1639	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4122.21408468798	38849	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATCCTAAATTTTTTTTT	3534	False	NA	NA	False	NA	NA	NA	95966441	95962173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95962340_95963818_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
82993	chr12	+	5105	24	NNC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-2	49732	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	176.9026304008	13	96	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACAGGGAAGCTAGGCTC	NA	False	NA	NA	False	NA	NA	NA	21366412	21423552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289_21375628_21376119_21376170_21378044_21378137_21379055_21379133_21380032_21380163_21382076_21382211_21382569_21382675_21383954_21384159_21386684_21386786_21390471_21390562_21390675_21390821_21392864_21392978_21395644_21395714_21397301_21397430_21399779_21399942_21401537_21401629_21403878_21404013_21411653_21411793_21423336
82994	chr12	+	5123	23	NNC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-2	49760	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	179.745142119898	13091	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGTGCAGGCGGCGCTCG	NA	False	NA	NA	False	NA	NA	NA	21366412	21423580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289_21375628_21376119_21376170_21378044_21378137_21379055_21379133_21380032_21380165_21382076_21382211_21382569_21382675_21383954_21384155_21386633_21386786_21390471_21390562_21390675_21390837_21392873_21392979_21397297_21397432_21399785_21399955_21401543_21401628_21403878_21404013_21411657_21411793_21423336
82995	chr16	-	1088	4	Genic_Genomic	ENSMUSG00000099764.2	novel	496	1	NA	NA	-19	50147	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7095	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20641409	20590747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_20590864_20594791_20595123_20615883_20615952_20640836
82996	chr12	+	1145	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	23	-27	-2	27	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	145	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCTGCCAACTGTTTC	NA	False	NA	NA	False	NA	NA	NA	21366412	21373847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
82997	chr12	-	950	7	FSM	ENSMUSG00000020949.10	ENSMUST00000021332.10	1022	7	60	12	15	0	multi-exon	FALSE	canonical	3	9641	junction_1	417.22073161444	1008545	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTGACTTATTTATTGT	NA	False	NA	NA	False	NA	NA	NA	65120721	65109209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
82998	chr12	+	906	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	23	212	-2	-212	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	173834	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	NA	False	NA	NA	NA	21366412	21373608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
82999	chr5	-	798	2	Genic_Genomic	ENSMUSG00000084111.5	novel	636	1	NA	NA	-139546	43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	605	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6893	False	NA	NA	False	NA	NA	NA	92428334	92288109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_92288726_92428152
83000	chr14	+	1020	9	FSM	ENSMUSG00000021996.17	ENSMUST00000022573.17	1988	9	60	908	0	9	multi-exon	FALSE	canonical	3	1089	junction_1	102.16133074701	8132	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTATTTTACCACCATT	NA	False	NA	NA	False	NA	NA	NA	74969796	74987297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
83001	chr5	-	721	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	-37	-48	-37	48	mono-exon	FALSE	NA	NA	NA	NA	NA	1016155	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	92288825	92288104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92288100_92288800
83002	chr18	+	1451	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	20	4	-4	-1	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	10007	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCTGGTGCTTGTGTTA	4660	False	NA	NA	False	NA	NA	NA	35731689	35750235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
83003	chr1	-	842	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	-3	-161	3	mono-exon	FALSE	NA	NA	NA	NA	NA	88	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
83004	chr12	+	1746	10	NNC	ENSMUSG00000021116.11	novel	3405	8	NA	NA	-10	32963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1849.45071592008	48873	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGACATGTGGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	78908848	78966747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564_78932055_78949414_78949584_78966589
83005	chr13	+	924	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	26	-12	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	18746	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAAAACAAAAAA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
83006	chr11	+	1086	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	56	-771	-29	771	multi-exon	FALSE	canonical	3	6598	junction_1	5536.08152825625	10033	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAGTAAAGATCTTTCT	NA	False	NA	NA	False	NA	NA	NA	114559405	114563928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
83007	chr4	+	2682	1	Intergenic	novelGene_1821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAAGGTGGGAGCATGG	NA	False	NA	NA	False	NA	NA	NA	40282406	40285088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_40282400_40285100
83008	chr5	+	942	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	275	-12	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	250	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121342596	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
83009	chr10	+	1055	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	-170	0	-170	0	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	29175	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4742	False	NA	NA	False	NA	NA	NA	127871273	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83010	chr2	+	1593	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	8	95	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83011	chr18	+	1235	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	-23	-437	-23	437	multi-exon	FALSE	canonical	3	6761	junction_1	2088.63605148325	394	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGGGGCTGATACAATGT	NA	False	NA	NA	False	NA	NA	NA	75133524	75136889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
83012	chr11	+	1056	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	31	-336	-2	336	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	54	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	97917780	97921654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
83013	chr18	+	1506	5	Fusion	ENSMUSG00000037236.17_ENSMUSG00000037058.17	novel	1522	5	NA	NA	589	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	1284.69889468311	46	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGCTGGTGCTTGTGTTA	9452	False	NA	NA	False	NA	NA	NA	35712668	35750235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_+_35712716_35731681_35731813_35743923_35744088_35746375_35746556_35749251
83014	chr7	-	1062	2	Genic_Genomic	ENSMUSG00000108366.2	novel	795	1	NA	NA	-428	52	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8780	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCCTACCTTAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	16454263	16452988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_16453852_16454064
83015	chr5	+	1252	7	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	3	211	junction_1	6037.22683071918	895	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342612	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121342941_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
83016	chrM	+	1157	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	459	-71	459	71	mono-exon	FALSE	NA	NA	NA	NA	NA	108945	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	9	True	NA	97	True	NA	NA	NA	5786	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
83017	chr4	+	1014	2	Genic_Genomic	ENSMUSG00000082622.2_ENSMUSG00000079962.3	novel	495	1	NA	NA	-47	61	multi-exon	FALSE	canonical	0	0	junction_1	0	3	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAACCAGAAAATCAAACAAC	NA	False	NA	NA	False	NA	NA	NA	90745072	90926571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_90745601_90926085
83018	chr9	+	910	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	67	0	67	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78099295	78116631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
83019	chr4	+	973	1	Antisense	novelGene_ENSMUSG00000046341.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3283	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAATTTTCTAAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	69843437	69844410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_69843400_69844400
83020	chr11	+	1478	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	44	382	0	58	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	112289	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTGTATATGTTGTT	NA	False	NA	NA	False	NA	NA	NA	107370353	107388617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
83021	chr1	-	943	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	-21	-31	-21	31	mono-exon	FALSE	NA	NA	NA	NA	NA	1400	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837426	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837400
83022	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	36189	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
83023	chr1	-	751	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-66	-31	66	mono-exon	FALSE	NA	NA	NA	NA	NA	4742	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAATCACCTT	NA	False	NA	NA	False	NA	NA	NA	65033794	65033043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033000_65033800
83024	chr12	+	4381	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	256	-1232	-10	1232	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	636	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAAACACTGTATGATAC	NA	False	NA	NA	False	NA	NA	NA	78908848	78935016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
83025	chrX	+	803	6	FSM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	-16	13	-16	0	multi-exon	FALSE	canonical	3	1181	junction_1	165.944569058466	2107	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTACATTCAAGACAC	5416	False	NA	NA	False	NA	NA	NA	72830617	72834417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
83026	chr9	+	1029	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	810	-1	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	319661	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
83027	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	364	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
83028	chr1	-	897	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	260	6	0	5	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	3680	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174626	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
83029	chr6	+	1867	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	482	92	-23	-92	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	873	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5092	False	NA	NA	False	NA	NA	NA	85428977	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
83030	chr11	+	1503	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	15	-71	1	71	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	224	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGGCAAGGGGTTACTA	NA	False	NA	NA	False	NA	NA	NA	48691201	48697332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
83031	chr2	+	2574	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	4	246	-4	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	19345	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTGGGGTCATTCTCCT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83032	chr9	+	1043	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	796	-1	14	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	160	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGACTGTACCTGGATT	NA	False	NA	NA	False	NA	NA	NA	119956853	119960639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
83033	chr15	+	972	7	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	1089	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4309.86846924848	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAGTTATTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	76788284	76791603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790504_76791464
83034	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	319	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	8315	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
83035	chrX	-	718	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	-37	-30	-37	30	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGCCCAAGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	151693188	151692470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693200
83036	chr9	+	879	6	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	19	-14	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	120.044325147006	8469	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATC	NA	False	NA	NA	False	NA	NA	NA	109760886	109857175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109856966
83037	chr10	+	797	2	Genic_Genomic	ENSMUSG00000112436.2_ENSMUSG00000111937.2	novel	478	1	NA	NA	-37	28	multi-exon	FALSE	non_canonical	0	0	junction_1	0	848	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTACAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116467693	116475359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_116468327_116475195
83038	chr5	-	2307	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	528	3	-528	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTAGTTAAATGACTT	6767	False	NA	NA	False	NA	NA	NA	148989847	148984039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
83039	chr18	-	959	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-25	31	-25	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7398	False	NA	NA	False	NA	NA	NA	61393068	61392109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
83040	chr8	+	980	8	NNC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	-17	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	331.893577730536	824	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAACCCACATGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	71819568	71822369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820763_71821490_71821522_71821775_71821948_71822170
83041	chr11	-	1368	8	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30379	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTACAGTGGCCTCTCCG	NA	False	NA	NA	False	NA	NA	NA	48696915	48690919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691398_48692487_48692662_48693099_48693246_48694228_48694325_48694682_48694794_48694980_48695123_48696370_48696481_48696804
83042	chrM	+	1154	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	459	-68	459	68	mono-exon	FALSE	NA	NA	NA	NA	NA	205552	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	9	True	NA	97	True	NA	NA	NA	5786	6940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
83043	chr3	-	1370	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	50	-443	50	443	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTGTGTGAGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	86049959	86044803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
83044	chr13	+	877	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	5	56	5	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	25	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAAATAAAGCTTTTTG	7967	False	NA	NA	False	NA	NA	NA	74554532	74555409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
83045	chrX	+	1558	3	Genic_Genomic	ENSMUSG00000080774.2_ENSMUSG00000080886.2	novel	745	1	NA	NA	-19	21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	41	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAACGGGGTGGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	102081210	102280270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_102082033_102188185_102188342_102279690
83046	chr5	+	976	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	23	271	-17	4	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	111	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTCCTTTTTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	121342566	121347033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
83047	chr12	+	1459	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	256	1690	-10	-1690	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	207	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTAGGCTTCTTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	78908848	78932094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
83048	chr6	-	1731	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	2	892	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	12829	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTATAGTAATAAATCTTTG	NA	False	NA	NA	False	NA	NA	NA	87828002	87818704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
83049	chr3	-	1034	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	-71	-78	71	mono-exon	FALSE	NA	NA	NA	NA	NA	6277	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	149779257	149778223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778200_149779300
83050	chr10	+	1889	3	Antisense	novelGene_ENSMUSG00000038302.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	49	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATTCCTGAGTTATTTG	7088	False	NA	NA	False	NA	NA	NA	42341259	42346087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_42341639_42342500_42342710_42344786
83051	chr11	-	777	2	Antisense	novelGene_ENSMUSG00000010342.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	237	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAAAAGAAATGAT	NA	False	NA	NA	False	NA	NA	NA	87344347	87343353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_87343868_87344084
83052	chr12	-	5031	18	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26090	intron_retention	FALSE	non_canonical	0	0	junction_1	4897.8231892423	16	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCGCACGCGCCGGCGGC	NA	False	NA	NA	False	NA	NA	NA	65120718	65083107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83053	chr5	+	1312	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	-2	-22	2	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	79	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAAGCCTGGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
83054	chr9	+	910	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	67	0	67	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78099295	78116631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
83055	chr12	+	1459	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	256	1690	-10	-1690	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	15711	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTAGGCTTCTTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	78908848	78932094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
83056	chr1	-	1037	4	FSM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	71	1733	-14	132	multi-exon	FALSE	canonical	3	2337	junction_3	156.5907617539	73176	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	NA	NA	NA	180641126	180630129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035
83057	chr12	-	4499	22	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26088	intron_retention	TRUE	non_canonical	0	0	junction_1	4629.45287952246	27026	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCACGCGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	65120718	65083109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090130_65090314_65090651_65090778_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102205_65102306_65102409_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83058	chr9	+	3291	5	Intergenic	novelGene_1054	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	951098	54	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	57252113	57415728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_57252292_57253621_57254181_57254289_57256079_57260952_57261013_57415023
83059	chr14	-	881	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-24	-65	-24	65	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTTATATGAGATTGC	NA	False	NA	NA	False	NA	NA	NA	88361268	88360387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_88360400_88361300
83060	chr12	-	4684	21	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26088	intron_retention	FALSE	non_canonical	0	0	junction_1	4696.21140787976	291593	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCACGCGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	65120718	65083109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090651_65090778_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102205_65102306_65102409_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83061	chr2	+	6369	3	FSM	ENSMUSG00000078879.11	ENSMUST00000121956.8	1271	3	16	-5114	16	3898	multi-exon	FALSE	canonical	3	19	junction_2	40	20701	104	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	176362330	176376781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_176362453_176370328_176370456_176370661
83062	chr12	-	4302	23	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	25993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4563.85297407884	6407	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCCAAGATCGCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	65120718	65083204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090130_65090314_65090386_65090488_65090651_65090778_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102205_65102306_65102409_65102538_65103023_65103290_65104498_65104687_65106642_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83063	chr8	+	1882	3	Genic_Genomic	ENSMUSG00000081094.5	novel	591	1	NA	NA	-22	104610	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGTCAGTGAAGGAT	7095	False	NA	NA	False	NA	NA	NA	19542929	19648152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_19543804_19567377_19567390_19647156
83064	chr10	+	946	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	3	312	3	-53	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	551	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACCCAACCTATCCCAA	NA	False	NA	NA	False	NA	NA	NA	79540327	79547491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
83066	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	3294	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83067	chrX	+	1480	10	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	-9	-119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1484.6556652788	46383	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAAAGGCTGAGCTCTC	NA	False	NA	NA	False	NA	NA	NA	105230759	105247148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230930_105238052_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
83068	chr11	+	1340	5	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	1381	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5254.37698495264	26405	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCAACTTAAGGGCTGG	4058	False	NA	NA	False	NA	NA	NA	100210811	100214303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142_100212886_100214147
83069	chr4	+	1156	1	Intergenic	novelGene_1923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	235	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGATAGCCAAGCTT	8244	False	NA	NA	False	NA	NA	NA	108439622	108440778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_108439600_108440800
83070	chr5	-	1889	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	2	0	-2	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	138708	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
83071	chr12	-	4399	21	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26088	intron_retention	FALSE	non_canonical	0	0	junction_1	4696.21140787976	10	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCACGCGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	65120718	65083109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090130_65090314_65090651_65090778_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102409_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83072	chr12	-	780	2	Genic_Genomic	ENSMUSG00000059033.8	novel	523	1	NA	NA	-37	320	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAGCACT	NA	False	NA	NA	False	NA	NA	NA	55443051	55442171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_55442347_55442446
83073	chr12	-	4252	16	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	10120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5021.4517245735	32	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAACAGAGCCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	65120718	65099077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65100223_65100741_65100853_65101927_65102093_65102205_65102306_65102409_65102536_65103022_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83074	chr12	+	3929	20	NNC	ENSMUSG00000035597.20	novel	4314	17	NA	NA	53	10561	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	179.040239058755	118961	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	7593	False	NA	NA	False	NA	NA	NA	65083192	65120721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_65083243_65089234_65089582_65090005_65090132_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103078_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197_65109517_65110452_65110550_65112510_65112577_65113413_65113550_65115773_65115886_65116726_65116827_65120588
83075	chr7	+	731	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	28	2	0	0	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	53	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCCTGTGTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	12656244	12660611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
83076	chr12	-	4906	19	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26090	intron_retention	FALSE	non_canonical	0	0	junction_1	4831.22698323938	9	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCGCACGCGCCGGCGGC	NA	False	NA	NA	False	NA	NA	NA	65120718	65083107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083240_65089229_65089580_65090003_65090653_65090781_65090899_65094885_65095053_65100057_65100220_65100737_65100853_65101927_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83077	chr2	+	6333	4	FSM	ENSMUSG00000074519.12	ENSMUST00000108926.3	1413	4	-113	-4807	-18	4807	multi-exon	FALSE	canonical	2	14	junction_3	11.2644968324772	23	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACATTTAAAGTTGTTTAG	NA	False	NA	NA	False	NA	NA	NA	177665058	177680622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_177665175_177673047_177673175_177673382_177673444_177674593
83078	chr9	+	1043	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	796	-1	14	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	12136	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGACTGTACCTGGATT	NA	False	NA	NA	False	NA	NA	NA	119956853	119960639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
83079	chr12	-	3927	20	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26005	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4763.69072099759	72611	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAAGGTGGGCCTGCCAC	NA	False	NA	NA	False	NA	NA	NA	65120718	65083192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090130_65090777_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102409_65102538_65103077_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83080	chr12	-	4054	20	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26082	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4763.69072099759	48068	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATCACACTGCGCACGCG	NA	False	NA	NA	False	NA	NA	NA	65120718	65083115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083237_65089231_65089580_65090003_65090130_65090777_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102409_65102536_65103022_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83081	chr12	-	4367	19	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26074	intron_retention	FALSE	non_canonical	0	0	junction_1	4831.22698323938	324	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTCGGGATCACACTG	NA	False	NA	NA	False	NA	NA	NA	65120718	65083123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083243_65089232_65089580_65090003_65090130_65090777_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108030_65108189_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83082	chr12	-	4140	20	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	26112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4763.69072099759	2	115	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGGCGCAGCGGTCACGT	NA	False	NA	NA	False	NA	NA	NA	65120718	65083085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083247_65089243_65089576_65090002_65090130_65090777_65090896_65094884_65095053_65100057_65100223_65100741_65100846_65101927_65102093_65102205_65102306_65102409_65102538_65103023_65103290_65104498_65104727_65107918_65108030_65108189_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83083	chr12	-	3759	17	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	-15	18806	intron_retention	FALSE	non_canonical	0	0	junction_1	4961.98362513358	1042	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTACTTGTTAAGCTGCAG	NA	False	NA	NA	False	NA	NA	NA	65120718	65090391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102411_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65107958_65108200_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83084	chr12	-	1951	7	FSM	ENSMUSG00000020949.10	ENSMUST00000021332.10	1022	7	63	-992	-15	992	multi-exon	FALSE	canonical	3	9641	junction_1	417.22073161444	415	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTGTACTGAAAAGGTAA	NA	False	NA	NA	False	NA	NA	NA	65120718	65108205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83085	chr14	-	881	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-24	-65	-24	65	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTTATATGAGATTGC	NA	False	NA	NA	False	NA	NA	NA	88361268	88360387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_88360400_88361300
83086	chrX	+	2625	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	19	-6	0	6	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	4595	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTTTCCAGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	104123380	104128798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
83087	chr6	-	7530	14	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	0	185105	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	94.5976218473361	58409	86	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTAGGTAGTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	112673609	112411705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112412346_112592546_112597866_112605422_112605486_112621548_112621712_112626534_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
83088	chr2	-	1377	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	5789	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3759	False	NA	NA	False	NA	NA	NA	154734728	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83089	chr2	+	6432	5	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8567	296900	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	3.67423461417477	43046	62	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	174919726	175228611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174919909_174928631_174928693_174929845_174933210_175130345_175132475_175227915
83090	chr2	+	6333	4	FSM	ENSMUSG00000074519.12	ENSMUST00000108926.3	1413	4	-113	-4807	-18	4807	multi-exon	FALSE	canonical	2	14	junction_3	11.2644968324772	170	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACATTTAAAGTTGTTTAG	NA	False	NA	NA	False	NA	NA	NA	177665058	177680622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_177665175_177673047_177673175_177673382_177673444_177674593
83091	chr2	+	2504	10	Intergenic	novelGene_2743	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	190488	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTACGCCTGGCGCCGGCG	8207	False	NA	NA	False	NA	NA	NA	154901229	154916376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_154902501_154904068_154904261_154905696_154905820_154905909_154905996_154906072_154906282_154906733_154906846_154907455_154907607_154909242_154909319_154910746_154910939_154916284
83092	chr14	-	881	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-24	-65	-24	65	mono-exon	FALSE	NA	NA	NA	NA	NA	125705	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTTATATGAGATTGC	NA	False	NA	NA	False	NA	NA	NA	88361268	88360387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_88360400_88361300
83093	chr2	+	2570	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	8	246	-8	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	892	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83094	chrM	+	1157	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	459	-71	459	71	mono-exon	FALSE	NA	NA	NA	NA	NA	1087082	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	9	True	NA	97	True	NA	NA	NA	5786	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
83095	chr2	+	2566	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	12	246	-12	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	4	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTTGGACTGGGGTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83096	chr17	-	1045	1	FSM	ENSMUSG00000043801.8	ENSMUST00000052440.8	685	1	-74	-286	-74	286	mono-exon	FALSE	NA	NA	NA	NA	NA	144770	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17566476	17565431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_17565400_17566500
83097	chrX	-	1942	8	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	-192059	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	7297.78206451964	44	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101425059	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231906_101247961_101248191_101424151
83098	chr2	-	2603	7	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	113	multi-exon	FALSE	canonical	0	0	junction_1	62.8640508469577	209	46	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTGCTCTGACCTTGAA	NA	False	NA	NA	False	NA	NA	NA	156681710	156631618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
83099	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117958	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
83100	chr5	+	1098	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	212	-22	-212	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	5364	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
83101	chr2	-	7243	5	NNC	ENSMUSG00000089756.3	novel	2939	4	NA	NA	11	131967	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.6808273176123	18	122	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	175722882	175578706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175579403_175707103_175713362_175714514_175714576_175714781_175714909_175722781
83102	chr3	+	863	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	104	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	17	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGCTTTAAACTTGCT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
83103	chr2	-	7258	5	NNC	ENSMUSG00000089756.3	novel	2939	4	NA	NA	-4	131967	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.6808273176123	72	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	175722897	175578706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175579403_175707103_175713362_175714514_175714576_175714781_175714909_175722781
83104	chr5	-	794	3	Fusion	ENSMUSG00000072692.8_ENSMUSG00000029544.17	novel	682	2	NA	NA	702	14	multi-exon	FALSE	non_canonical	0	0	junction_1	0	162203	27	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCTGTGATGGCCA	8384	False	NA	NA	False	NA	NA	NA	115318616	115241235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_115241617_115287058_115287374_115318518
83105	chr5	-	737	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	-37	-64	-37	64	mono-exon	FALSE	NA	NA	NA	NA	NA	10851	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTAGGTCGTGGATGAT	NA	False	NA	NA	False	NA	NA	NA	92288825	92288088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92288100_92288800
83106	chr1	+	816	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	380	-2	92	2	multi-exon	FALSE	canonical	3	989	junction_1	26.5	7156	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGCCCAGTGTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	157240301	157247808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_157240696_157241313_157241366_157247438
83107	chrX	-	1240	4	Antisense	novelGene_ENSMUSG00000016319.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1361410	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGAGCAAAGCAAATGGCC	NA	False	NA	NA	False	NA	NA	NA	36062460	36059303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36059492_36060492_36060982_36061387_36061530_36062039
83108	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	476743	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
83109	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_10819_11031_11109_11205
83110	chr9	-	1651	12	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2064.67613372899	147027	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996660	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976579_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
83111	chrX	+	1480	10	NNC	ENSMUSG00000062070.13	novel	1825	11	NA	NA	-9	-119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1484.6556652788	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAAAGGCTGAGCTCTC	NA	False	NA	NA	False	NA	NA	NA	105230759	105247148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_105230930_105238052_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
83112	chr6	-	2954	13	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-35162	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2383.48313486097	826126	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	NA	False	NA	NA	False	NA	NA	NA	7728416	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108_7693918_7728126
83113	chr11	+	1451	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	71	382	-22	58	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	169	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTGTATATGTTGTT	NA	False	NA	NA	False	NA	NA	NA	107370380	107388617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
83114	ERCC-00130	+	1051	1	FSM	ERCC-00130A	EF011072	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	642	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00130_+_0_1100
83115	chr9	-	1252	5	NNC	ENSMUSG00000060461.6	novel	619	3	NA	NA	-3194	284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	89875.6986993008	175	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTATGACCTAAGGCAAAT	NA	False	NA	NA	False	NA	NA	NA	78278653	78274049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78274577_78275002_78275186_78275266_78275471_78275824_78275977_78278467
83116	chr2	-	5625	6	Fusion	ENSMUSG00000089756.3_ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3628	2137	intron_retention	TRUE	non_canonical	0	0	junction_1	61.1228271597445	17173	91	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	175895246	175708536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_175711006_175882496_175883214_175883715_175884166_175884417_175886158_175886363_175886491_175895124
83117	chr11	+	649	5	Antisense	novelGene_ENSMUSG00000091228.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1738	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCGGAGAGAGGAGGGACG	NA	False	NA	NA	False	NA	NA	NA	93840640	93846722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_93840872_93842724_93842837_93843623_93843727_93846319_93846453_93846652
83118	chr19	+	1124	9	NIC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	154	-442	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	3133.28493507613	1580	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGGGAGGGGACCTTC	997	False	NA	NA	False	NA	NA	NA	8944558	8955401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
83119	chr13	+	1483	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	237	2	0	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	2944	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAGCTTAATTACATTT	NA	False	NA	NA	False	NA	NA	NA	41154735	41166489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
83120	chr4	-	3379	9	NNC	ENSMUSG00000040044.12	novel	838	7	NA	NA	-1	2021	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	288.038951359013	482	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGTTAATGTGACAACCT	-2	True	NA	NA	False	NA	NA	NA	34614910	34590051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34592500_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607209_34614864
83121	chr2	-	6806	6	NNC	ENSMUSG00000089756.3	novel	2939	4	NA	NA	21	131967	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	17.0246879560243	23497	161	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	175722872	175578706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175579403_175707103_175712444_175712870_175713362_175714514_175714576_175714781_175714909_175722781
83122	chrM	+	1009	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-53	1	-53	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	317	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATATGTCTGATAAAAGA	274	False	NA	56	True	NA	NA	NA	2697	3706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
83123	chr2	+	4444	6	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	90	131571	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	22.1413640049569	1	91	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	177538978	177679148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177539047_177546077_177546166_177546411_177546473_177547625_177547895_177548063_177551326_177678452
83124	chr4	-	3464	10	NIC	ENSMUSG00000040044.12	novel	838	7	NA	NA	-7	2021	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	211.066077068033	92	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGTTAATGTGACAACCT	-12	True	NA	NA	False	NA	NA	NA	34614920	34590051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34592500_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
83125	chr5	+	1779	6	NIC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	4	0	intron_retention	FALSE	canonical	3	14010	junction_2	1238.46727853424	1357	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121342612	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
83126	chr2	+	4706	4	FSM	ENSMUSG00000078866.11	ENSMUST00000108952.4	1569	4	-95	-3042	18	1116	multi-exon	FALSE	canonical	3	64	junction_2	23.3666428910958	527	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGACATTTAAAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	177156543	177171038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_177156642_177165078_177165206_177165410_177165472_177166618
83127	chr3	+	1261	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	-191	-1	-191	1	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	512	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGTACTTTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	137570056	137572684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
83128	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	77	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83129	chr9	+	758	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-224	-44	224	mono-exon	FALSE	NA	NA	NA	NA	NA	964	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83130	chr5	-	2750	6	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	-31569	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3231.3420988809	28605	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGCCTCAAGGAAACGT	NA	False	NA	NA	False	NA	NA	NA	149021892	148983523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709_148989758_149021875
83131	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	110	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83132	chr19	+	509	4	ISM	ENSMUSG00000071644.11	ENSMUST00000135025.2	1272	5	588	442	588	-442	3prime_fragment	FALSE	canonical	3	8905	junction_1	396.184300547106	4894	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGGGAGGGGACCTTC	6794	False	NA	28	True	NA	NA	NA	8950355	8955401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8950473_8954681_8954855_8954948_8955074_8955307
83133	chr6	-	1746	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	2	907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	22744	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGCCGGAGCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	87828002	87818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
83134	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	33150	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83135	chr2	+	2525	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	1413	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961969_29962013
83136	chr2	+	5030	5	NNC	ENSMUSG00000078896.12	novel	957	4	NA	NA	34	2280	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	39.7775062063976	15	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	175311811	175326244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_175311916_175319791_175319919_175320124_175320186_175321337_175321577_175321745
83137	chr2	-	1390	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	10	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	61043	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3746	False	NA	NA	False	NA	NA	NA	154734741	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83138	chr2	+	2569	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	9	246	-9	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	27	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGACTGGGGTCATT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83139	chr6	-	1175	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	47	6	47	-6	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	171	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTCTCGGGCTGATTG	NA	False	NA	NA	False	NA	NA	NA	125471707	125437234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
83140	chr2	-	2106	2	Intergenic	novelGene_2780	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30590	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTATGTAGTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	166096576	166094428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_166096203_166096244
83141	chr5	-	1132	2	Genic_Genomic	ENSMUSG00000105129.2_ENSMUSG00000067058.8	novel	610	1	NA	NA	-34	34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	331	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAATAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	106129082	105945152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_105945572_106128369
83142	chr4	+	10716	4	NNC	ENSMUSG00000078500.4	novel	1427	4	NA	NA	-193137	-22847	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	28	130	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTTCCCTAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	145402226	145603685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145402473_145592759_145592917_145593235_145594579_145594715
83143	chr14	+	2331	17	Antisense	novelGene_ENSMUSG00000037544.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCAGCCGCTGATTGGA	3821	False	NA	NA	False	NA	NA	NA	47625245	47655667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_47625432_47629187_47629235_47631591_47631775_47633211_47633431_47635874_47635971_47636979_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645373_47647768_47647836_47648901_47649025_47649115_47649203_47650436_47650497_47651101_47651296_47653791_47654028_47655564
83144	chr2	-	2130	5	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	71	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGCCTCAGGTGCGGG	NA	False	NA	NA	False	NA	NA	NA	29962581	29952110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29952291_29958278_29958336_29958968_29959053_29960443_29960600_29960928
83145	chr5	+	914	6	FSM	ENSMUSG00000041453.13	ENSMUST00000075453.9	899	6	-14	-1	-14	0	multi-exon	FALSE	canonical	3	51	junction_1	5104.64844626934	755	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	NA	False	NA	NA	NA	146769990	146772796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
83146	chr2	-	1580	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-76	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	1115	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3556	False	NA	NA	False	NA	NA	NA	154734931	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83147	chr2	+	1795	6	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-266	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7400.46396923869	504	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTAAGCTTTTTAATGC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959053_29960443_29960600_29960930_29962072_29962146
83148	chr4	+	1186	1	Intergenic	novelGene_1922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATAGCCAAGCTTAGGC	8218	False	NA	NA	False	NA	NA	NA	108439596	108440782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_108439600_108440800
83149	chr2	-	1659	2	Intergenic	novelGene_2781	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_1	0	47	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTATGTAGTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	166096602	166094428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_166095994_166096508
83150	chr19	+	870	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	58	1	0	-1	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTTTGTGATTGAGGA	4927	False	NA	NA	False	NA	NA	NA	9960067	9962461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
83151	chr2	-	1422	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-22	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	349	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3714	False	NA	NA	False	NA	NA	NA	154734773	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83152	chr4	-	1525	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	259	96	259	-96	multi-exon	FALSE	canonical	3	980	junction_1	0	118	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGAGGCATGCGTATCC	NA	False	NA	NA	False	NA	NA	NA	127224378	127219123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127220565_127224294
83153	chr2	-	1344	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	4	-32	4	32	mono-exon	FALSE	NA	NA	NA	NA	NA	65	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTCTTTGGGGGAATTT	7164	False	NA	NA	False	NA	NA	NA	113751482	113750138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_113750100_113751500
83154	chr9	+	932	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	71	6	1	-6	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	121	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATGAACCATAGTCGA	NA	False	NA	NA	False	NA	NA	NA	120400580	120403714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
83155	chrM	+	6297	3	Genic_Genomic	ENSMUSG00000064354.1_ENSMUSG00000064345.1_ENSMUSG00000064351.1_ENSMUSG00000064357.1_ENSMUSG00000064341.1	novel	1545	1	NA	NA	0	783	multi-exon	FALSE	non_canonical	0	0	junction_1	0	211	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCTTAGTATAATTAAT	-2	True	NA	109	True	NA	NA	NA	2750	9390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3091_3286_8800_8946
83156	chrX	+	2625	4	NNC	ENSMUSG00000086877.8	novel	1412	4	NA	NA	43	663	intron_retention	FALSE	canonical	2	8	junction_3	7.76029781788188	6	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGAACTCACTCTGTAG	NA	False	NA	NA	False	NA	NA	NA	20828395	20853639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20828897_20833967_20834048_20838516_20838586_20851664
83158	chr2	+	1107	8	FSM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	-84	-109	-84	109	multi-exon	FALSE	canonical	3	2861	junction_1	795.089880684786	42	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTACTTCACATGATGGG	NA	False	NA	NA	False	NA	NA	NA	26800691	26803439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
83159	chr2	+	3327	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	1349	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	40988	98	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTACTTTGTGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	29952110	29963938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29963132_29963731
83160	chr9	+	1029	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	810	-1	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	65	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
83161	chr11	-	1503	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-263	0	at_least_one_novel_splicesite	FALSE	canonical	3	238	junction_6	7811.11681622204	745	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9678	False	NA	NA	False	NA	NA	NA	69812475	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988_69812161_69812263
83162	chr2	+	3216	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	1344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	3153	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGTTACTTTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	29952110	29963933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29963092_29963797
83163	chr6	-	7461	13	NNC	ENSMUSG00000030254.17	novel	2577	12	NA	NA	4	185105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.2142712183795	58	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTAGGTAGTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	112673627	112411705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112412346_112592546_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
83164	chr2	-	1372	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	5	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	27	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3764	False	NA	NA	False	NA	NA	NA	154734723	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83165	chr4	+	8327	1	Genic_Genomic	ENSMUSG00000078500.4	novel	NA	NA	NA	NA	-5	-22847	mono-exon	FALSE	NA	NA	NA	NA	NA	88082	94	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTTCCCTAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	145595358	145603685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_145595400_145603700
83166	chr4	-	3595	11	NIC	ENSMUSG00000040044.12	novel	838	7	NA	NA	0	2021	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	306.972702369445	4559	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGTTAATGTGACAACCT	15	True	NA	NA	False	NA	NA	NA	34614893	34590051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34592500_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34598982_34599141_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
83167	SIRV3	-	1743	10	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	586.241512613284	1626	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_4567_4784_6061_6334_7270_7370_7872_7989_8124_8208_8755_8976_9189_9299_9434
83168	chr17	+	2301	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	-207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	732.756136484407	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTGGACTGTAATAAACAG	NA	False	NA	NA	False	NA	NA	NA	29251646	29262140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357_29261975_29262039
83169	chr2	-	1398	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	2	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	68035	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3738	False	NA	NA	False	NA	NA	NA	154734749	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83170	chr2	+	4906	5	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	-28	1116	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	50.2220071283496	48	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGACATTTAAAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	177156497	177171038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177156642_177159699_177159854_177165078_177165206_177165410_177165472_177166618
83171	chr13	-	1491	3	Genic_Genomic	ENSMUSG00000114738.2	novel	793	1	NA	NA	-22	195681	multi-exon	FALSE	canonical	0	0	junction_1	0	147	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTCACCCAACAATCTCT	NA	False	NA	NA	False	NA	NA	NA	101046419	100849923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_100850415_100850844_100850956_101045530
83172	chr11	-	1074	8	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	127	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCCACCACGACCCTGT	NA	False	NA	NA	False	NA	NA	NA	48696918	48691216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691398_48692487_48692662_48693099_48693246_48694228_48694325_48694682_48694794_48694980_48695123_48696370_48696481_48696804
83173	chrX	+	2843	4	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-13	663	intron_retention	FALSE	canonical	3	11	junction_1	67.4438037677789	1708	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGAACTCACTCTGTAG	NA	False	NA	NA	False	NA	NA	NA	20827909	20853639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20827952_20828088_20828835_20833967_20834048_20851664
83174	chr2	+	2469	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	5496.39693202511	84	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTGGGGTCATTCTCCT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961349_29961453
83175	chrX	+	2843	4	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-13	663	intron_retention	FALSE	canonical	3	11	junction_1	67.4438037677789	1447	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGAACTCACTCTGTAG	NA	False	NA	NA	False	NA	NA	NA	20827909	20853639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20827952_20828088_20828835_20833967_20834048_20851664
83176	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
83177	chr2	+	2583	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	-5	246	5	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	1850	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTCTCCTTGTTTTGTA	NA	False	NA	NA	False	NA	NA	NA	29952110	29962594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83178	chr2	+	4528	6	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-81732	199330	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	3.6	3662	75	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	174846561	175131041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174846644_174854954_174855153_174928293_174928421_174928631_174928693_174929845_174933210_175130345
83179	chr9	+	1159	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	-75	-309	-61	18	mono-exon	FALSE	NA	NA	NA	NA	NA	237179	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAAGGACTGAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	81559589	81560748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_81559600_81560700
83180	chr2	+	1738	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	365	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	5496.39693202511	4	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACCTGATGCTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	29952110	29961806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961491_29961547
83181	chrX	+	1012	7	Antisense	novelGene_ENSMUSG00000031320.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88525	6	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTTAACTTTTGTAGGT	NA	False	NA	NA	False	NA	NA	NA	101228547	101248184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_101228735_101229102_101229271_101230004_101230174_101230960_101231059_101231427_101231608_101231898_101231906_101247981
83182	chr7	-	777	6	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	1036	986	932	0	3prime_fragment	FALSE	canonical	3	4974	junction_1	3734.4104969861	31562	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	9371	False	NA	NA	False	NA	NA	NA	99131909	99128088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776
83183	chr2	-	2143	1	Intergenic	novelGene_2779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTTATGTAGTTTAATAT	NA	False	NA	NA	False	NA	NA	NA	166096571	166094428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_166094400_166096600
83184	chr13	+	4851	10	Intergenic	novelGene_1394	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	16.5894507607458	1143	96	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAGAGAAAGCTTATGAATA	NA	False	NA	NA	False	NA	NA	NA	61921568	62141202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_61922014_61924014_61924571_61924666_61924848_61925005_61926975_61965690_61965777_62054123_62054525_62056111_62056521_62135744_62135872_62136049_62136111_62140586
83185	chr4	-	4127	9	NIC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	3817	2021	intron_retention	FALSE	canonical	0	0	junction_4	291.374222435685	5	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGTTAATGTGACAACCT	3832	False	NA	NA	False	NA	NA	NA	34611076	34590051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34598982_34599141_34599703_34599809_34605536_34605682_34607130_34607229_34611021
83186	chr19	-	696	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	1	17	1	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	27273	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	32443977	32443281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_32443300_32444000
83187	chr3	-	836	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	109	32	109	-32	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	42	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGACAAATAAAAAGTCCTA	NA	False	NA	NA	False	NA	NA	NA	86049900	86045278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
83188	chr2	+	2570	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	8	246	-8	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	313	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83189	chr2	+	1859	4	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6971.23300109497	138	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACTGGGGTCATTCTCC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959080_29961073
83190	chr2	+	2285	6	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6461.4581945564	706	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959426_29960443_29960600_29960930
83191	chr2	-	5202	9	Fusion	ENSMUSG00000083481.5_ENSMUSG00000089756.3	novel	2939	4	NA	NA	-16	67	multi-exon	TRUE	non_canonical	0	0	junction_1	15.6264999280069	12	88	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTACCACAGCTTTAGATTA	NA	False	NA	NA	False	NA	NA	NA	175722909	175596708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_175597375_175603396_175603453_175607165_175607344_175708535_175712095_175712178_175712334_175713089_175713362_175714514_175714576_175714781_175714909_175722781
83192	chr15	+	836	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	7	8	7	-8	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	16967	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788284	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
83193	chr2	+	2568	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	10	246	-10	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	53	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGGACTGGGGTCAT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83194	chr2	+	2576	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	2	246	-2	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	1172	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGGGTCATTCTCCTTG	NA	False	NA	NA	False	NA	NA	NA	29952110	29962587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83195	chr7	+	727	6	NNC	ENSMUSG00000012848.16	novel	761	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	7187.40591312332	17	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660416_12660498
83196	chr12	-	3637	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	157	-2312	0	138	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	4707	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCACTTAAGCAAAAGGAT	8621	False	NA	NA	False	NA	NA	NA	85421464	85387249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
83198	chrX	+	2843	4	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-13	663	intron_retention	FALSE	canonical	3	11	junction_1	67.4438037677789	6598	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGAACTCACTCTGTAG	NA	False	NA	NA	False	NA	NA	NA	20827909	20853639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20827952_20828088_20828835_20833967_20834048_20851664
83199	chr17	+	2095	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	478	0	-2	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	70	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTTGTGTCTAGAAG	NA	False	NA	NA	False	NA	NA	NA	29251646	29261869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
83200	chr8	+	1029	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	79	1520	12	1270	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATTAATTTGCATTGT	NA	False	NA	NA	False	NA	NA	NA	57965019	57967513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
83201	chr2	+	4501	6	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	70	131571	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	21.5777663348179	22	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	177538958	177679148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177539047_177546077_177546205_177546411_177546473_177547625_177547959_177548126_177550845_177677974
83202	chr1	-	890	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	267	6	7	5	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174619	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
83203	chr2	+	1426	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	1152	246	-4	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	8	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGGGGGGTATAGACGG	NA	False	NA	NA	False	NA	NA	NA	29952110	29961437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83204	chr2	-	1146	5	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	323	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGCCTCAGGTGCGGG	NA	False	NA	NA	False	NA	NA	NA	29961597	29952110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29952291_29958278_29958336_29958968_29959053_29960443_29960600_29960928
83205	chr6	-	1746	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	2	907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	23	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGCCGGAGCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	87828002	87818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
83206	chrX	-	1240	4	Antisense	novelGene_ENSMUSG00000016319.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	467	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGAGCAAAGCAAATGGCC	NA	False	NA	NA	False	NA	NA	NA	36062460	36059303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36059492_36060492_36060982_36061387_36061530_36062039
83207	chr11	+	1647	6	NNC	ENSMUSG00000017404.13	novel	737	6	NA	NA	53	4180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6422.31984254911	511	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97917835	97925498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096_97921296_97925325
83208	chr17	+	1010	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	35	23	-9	-23	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	9190	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGTTGGTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	26342508	26345564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
83209	chr2	+	3307	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	1348	intron_retention	FALSE	non_canonical	0	0	junction_7	5829.40817523266	41	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACTTTGTGTATGTGT	NA	False	NA	NA	False	NA	NA	NA	29952110	29963937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959644_29960196_29960368_29960452_29960600_29960930_29963092_29963797
83210	chr2	+	2553	2	Genic_Genomic	ENSMUSG00000082064.4	novel	891	1	NA	NA	-6548	18	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	76	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTCATAAAGACAATAA	2868	False	NA	NA	False	NA	NA	NA	154539180	154546637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_154540778_154545681
83211	chr2	+	2569	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	9	246	-9	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	138	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGACTGGGGTCATT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83212	chr2	-	2566	8	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	501	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGCCTCAGGTGCGGG	NA	False	NA	NA	False	NA	NA	NA	29962576	29952110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29952291_29958278_29958336_29958968_29959113_29959336_29959443_29959527_29959641_29960194_29960365_29960449_29960598_29960928
83213	chr2	+	4537	5	NNC	ENSMUSG00000084858.2	novel	2306	2	NA	NA	-8901	85211	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	9.70502447189084	106215	86	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	176031718	176129572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176031884_176040966_176041028_176042180_176042231_176042482_176045811_176128639
83214	chr4	+	5421	2	Antisense	novelGene_ENSMUSG00000083235.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	127820	78	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTTCCCTAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	145403998	145603685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_145404168_145598433
83215	chr2	+	1750	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	366	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	63647	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGATGCTTTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29961807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961349_29961394
83216	chr2	+	3896	5	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	97	199330	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	3.89711431702997	68	67	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	174928390	175131041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174928421_174928631_174928693_174929845_174930105_174930359_174933210_175130345
83217	chr2	+	3631	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	252	-1059	252	1059	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	1153	76	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCCAGAGCTACAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	29952116	29963648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83218	chr2	+	3070	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	1310	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	7199.79719669029	10	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAGTGTACTCACCTGTA	NA	False	NA	NA	False	NA	NA	NA	29952110	29963899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29963079_29963792
83219	chr1	+	839	2	Genic_Genomic	ENSMUSG00000101496.2	novel	598	1	NA	NA	-37	104150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	443	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	72126978	72231763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_72127635_72231580
83220	chr2	-	1614	8	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	702	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGCCTCAGGTGCGGG	NA	False	NA	NA	False	NA	NA	NA	29961623	29952110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29952291_29958278_29958336_29958968_29959113_29959336_29959443_29959527_29959642_29960194_29960365_29960449_29960598_29960928
83221	chr2	+	4673	4	NNC	ENSMUSG00000078866.11	novel	794	4	NA	NA	23	1116	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	44.5146667465405	17484	69	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGACATTTAAAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	177156548	177171038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177156614_177165078_177165206_177165410_177165472_177166618
83222	chr2	+	2587	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-5	at_least_one_novel_splicesite	FALSE	canonical	2	1321	junction_7	5383.05377256881	13681	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACTGGGGTCATTCTCC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960614_29960930
83223	chr4	-	5430	2	Intergenic	novelGene_2023	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	409	81	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAGCTAGAGCCATGAGT	NA	False	NA	NA	False	NA	NA	NA	145603685	145403998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_145404441_145598697
83224	chr2	+	2260	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	1087	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961426_29961735
83225	chr2	+	3896	5	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	97	199330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.89711431702997	20	67	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	174928390	175131041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174928421_174928631_174928693_174929845_174930105_174930359_174933210_175130345
83226	chrX	+	2902	4	NIC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-10	663	intron_retention	FALSE	canonical	3	11	junction_1	69.6036397515724	123	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGAACTCACTCTGTAG	NA	False	NA	NA	False	NA	NA	NA	20827912	20853639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20827952_20828088_20828897_20833967_20834048_20851664
83227	chr2	+	3637	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	-1059	246	1059	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	3	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCCAGAGCTACAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	29952110	29963648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83228	chr2	+	2504	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5820.02390415177	53	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGACTGGGGTCATTCT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960533_29960930
83229	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_10819_11031_11109_11205
83230	chr2	+	2271	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-294	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5661.24743951619	1339	119	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGGATAATGTTTGGGAA	NA	False	NA	NA	False	NA	NA	NA	29952110	29962295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960465_29960600_29960930
83231	chr2	+	4299	6	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8607	199330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.6	114	64	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	174919686	175131041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174919822_174928293_174928421_174928631_174928693_174929845_174930261_174930344_174933210_175130345
83232	chr2	+	2570	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	8	246	-8	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	10562	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83233	chr2	+	2570	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	8	246	-8	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	41553	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83234	chr2	+	1083	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	1495	246	-36	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTCTCAATTAATTTGGG	NA	False	NA	NA	False	NA	NA	NA	29952110	29961094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83235	chr4	+	5421	2	Antisense	novelGene_ENSMUSG00000083235.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	78	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTTCCCTAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	145403998	145603685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_145404168_145598433
83236	chr2	+	2410	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	168	246	-168	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	347	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTATAAAACTTTATAAAT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83237	chr13	+	859	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	-23	-41	-23	41	mono-exon	FALSE	NA	NA	NA	NA	NA	231416	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGATCAAAAAAAAAAATGCA	NA	False	NA	NA	False	NA	NA	NA	108807113	108807972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108807100_108808000
83238	chr2	+	4299	6	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8607	199330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.6	4	64	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	174919686	175131041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174919822_174928293_174928421_174928631_174928693_174929845_174930261_174930344_174933210_175130345
83239	chr2	+	2206	7	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7515.69936126299	4	82	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATTTTTTTTGGACTGG	NA	False	NA	NA	False	NA	NA	NA	29952110	29962573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959087_29960215_29960396_29960457_29960600_29960930_29961584_29961697
83240	chr12	-	1951	7	FSM	ENSMUSG00000020949.10	ENSMUST00000021332.10	1022	7	63	-992	-15	992	multi-exon	FALSE	canonical	3	9641	junction_1	417.22073161444	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTGTACTGAAAAGGTAA	NA	False	NA	NA	False	NA	NA	NA	65120718	65108205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
83241	chr2	+	5251	8	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078864.11	novel	701	4	NA	NA	-6	266883	multi-exon	TRUE	non_canonical	0	0	junction_5	98.9588659133538	2	152	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	177190001	177679148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246_177200570_177411955_177412258_177547744_177550845_177677974
83242	chr2	+	2402	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7169.39395538423	21071	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958278_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961566_29961735
83243	chrM	-	6806	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	243	-6530	243	6530	mono-exon	FALSE	NA	NA	NA	NA	NA	74	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGGCCATATAAGATATAT	-4	True	NA	NA	False	NA	NA	NA	13827	7021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_7000_13800
83245	chr2	+	2420	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5820.02390415177	10246	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGACTGGGGTCATT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960559_29961038
83246	chr17	+	1050	4	FSM	ENSMUSG00000000579.15	ENSMUST00000124894.2	675	4	-9	-366	3	366	multi-exon	FALSE	canonical	3	5304	junction_1	1851.44670160631	8932	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCCCGGAGCATCACCCG	NA	False	NA	NA	False	NA	NA	NA	6869193	6875314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472
83247	chr4	+	1182	1	Intergenic	novelGene_1921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGATAGCCAAGCTT	8218	False	NA	NA	False	NA	NA	NA	108439596	108440778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_108439600_108440800
83248	chr4	-	5398	11	NNC	ENSMUSG00000028690.5	novel	2106	4	NA	NA	-44	16782	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	86.6972317897175	506	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGGCCGGCCTACGGGG	NA	False	NA	NA	False	NA	NA	NA	116565529	116542693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116542855_116544600_116544719_116548970_116549126_116550078_116550199_116550909_116551043_116556365_116559060_116559388_116559496_116559597_116561065_116561703_116561857_116563077_116563273_116565434
83249	chr15	-	1847	8	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	390	-269	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	577.7606665005	9138	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCGACTCCATGCAGTC	NA	False	NA	NA	False	NA	NA	NA	83056403	83037963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83039017_83044213_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
83251	chr7	-	1092	3	Genic_Genomic	ENSMUSG00000083820.2	novel	348	1	NA	NA	-10	19528	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1635	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTGGTTTGAACCTTAA	4357	False	NA	NA	False	NA	NA	NA	80811502	80791616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_80791791_80803145_80803273_80810711
83252	chr2	+	1796	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	782	246	366	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	35	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGATGCTTTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29961807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83253	chr2	+	5185	4	FSM	ENSMUSG00000078879.11	ENSMUST00000108985.9	1295	4	8	-3898	8	3898	multi-exon	FALSE	canonical	3	5	junction_3	41.4085337420521	534	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	176362362	176376781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_176362453_176370328_176370456_176370661_176370723_176371874
83254	chr1	+	810	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	299	830	-5	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	28456	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
83255	chr2	+	4299	6	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8607	199330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.6	1793	64	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	174919686	175131041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174919822_174928293_174928421_174928631_174928693_174929845_174930261_174930344_174933210_175130345
83258	chr2	+	4299	6	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8607	199330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.6	95	64	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	174919686	175131041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174919822_174928293_174928421_174928631_174928693_174929845_174930261_174930344_174933210_175130345
83259	chr19	+	1758	11	Fusion	ENSMUSG00000071644.11_ENSMUSG00000118261.2	novel	1864	10	NA	NA	75	0	multi-exon	FALSE	non_canonical	0	0	junction_1	2862.90681650661	69951	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTTTTCTGTCATAGC	NA	False	NA	NA	False	NA	NA	NA	8753704	8955843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8753753_8944558_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
83260	chr9	-	884	1	Antisense	novelGene_ENSMUSG00000099927.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	135	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCAAGGATGTCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	84306898	84306014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_84306000_84306900
83261	chr2	+	1814	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	366	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5692.83046417839	156	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGATGCTTTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29961807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959091_29959296_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83262	chr7	-	922	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	45	1	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	7142	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	45109263	45107368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
83263	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	8315	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
83264	chrM	+	1531	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-746	-1	-746	1	mono-exon	FALSE	NA	NA	NA	NA	NA	17948	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	84	False	NA	NA	False	NA	NA	NA	7860	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7900_9400
83265	chr4	-	856	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	20	-43	20	43	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	313	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCCCAGCAGGTGTCCC	NA	False	NA	NA	False	NA	NA	NA	135780684	135776998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
83266	chr2	+	2556	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7094.70864627366	68	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGACTGGGGTCATT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959501_29959644_29960196_29960368_29960452_29960559_29960930
83267	chr17	-	1045	1	FSM	ENSMUSG00000043801.8	ENSMUST00000052440.8	685	1	-74	-286	-74	286	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17566476	17565431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_17565400_17566500
83268	chr4	-	2352	3	ISM	ENSMUSG00000040044.12	ENSMUST00000140334.2	838	7	17040	-1530	767	544	3prime_fragment	FALSE	canonical	3	640	junction_2	49	13023	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTTAGGCAGTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	34597853	34591528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_34593175_34595076_34595237_34597307
83269	chr2	+	5185	4	FSM	ENSMUSG00000078896.12	ENSMUST00000109002.9	957	4	-30	-4198	-30	2280	multi-exon	FALSE	canonical	3	5	junction_3	41.8170619085878	2	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTTAGGCAGTGAAGGAT	NA	False	NA	NA	False	NA	NA	NA	175311825	175326244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_175311916_175319791_175319919_175320124_175320186_175321337
83270	chr2	+	2478	6	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-4	intron_retention	FALSE	non_canonical	0	0	junction_3	7400.46396923869	10841	151	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTGGGGTCATTCTCCT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959122_29959471_29959651_29960345_29960600_29960930
83271	chr2	+	2525	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5820.02390415177	9	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGGACTGGGGTCAT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960614_29960987
83272	chr2	+	2535	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7380.37656525045	2	106	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGACTGGGGTCATT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959638_29960196_29960368_29960452_29960559_29960917
83273	chr4	+	1184	1	Intergenic	novelGene_1919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4453	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGATAGCCAAGCTT	8216	False	NA	NA	False	NA	NA	NA	108439594	108440778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_108439600_108440800
83274	chr14	-	953	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	43	566	43	-566	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	238611	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1731	False	NA	NA	False	NA	NA	NA	19873849	19861984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
83275	chr15	-	961	1	NIC	ENSMUSG00000018042.19	novel	1982	9	NA	NA	15454	-269	mono-exon	FALSE	NA	NA	NA	NA	NA	236	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCGACTCCATGCAGTC	NA	False	NA	NA	False	NA	NA	NA	83038924	83037963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_83038000_83038900
83276	chr2	+	2434	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-495	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5767.55654413513	51	104	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCTCCCACCGTTACTG	NA	False	NA	NA	False	NA	NA	NA	29952110	29962094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958620_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83277	chr2	-	1812	8	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2464	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGCCTCAGGTGCGGG	NA	False	NA	NA	False	NA	NA	NA	29961807	29952110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29952291_29958278_29958336_29958968_29959113_29959336_29959442_29959527_29959642_29960194_29960361_29960448_29960615_29960927
83278	chr2	+	2527	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	245	52	245	-52	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	4	127	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACGTCAGGAATCTTGC	NA	False	NA	NA	False	NA	NA	NA	29952109	29962537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83279	chr1	+	810	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	299	830	-5	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	8960	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
83280	chr12	-	1320	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	157	5	0	-5	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	102	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTGAAGTCCTTGTGTA	8621	False	NA	NA	False	NA	NA	NA	85421464	85389566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
83281	chr2	+	2539	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	39	246	-39	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	25	139	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTGCTCCAATAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	29952110	29962550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83282	chr2	+	3531	7	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	1348	intron_retention	FALSE	non_canonical	0	0	junction_6	6061.75512033346	675609	95	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTACTTTGTGTATGTGT	NA	False	NA	NA	False	NA	NA	NA	29952110	29963937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959644_29960196_29960368_29960452_29960600_29960930_29963092_29963797
83283	chr2	+	2435	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	6	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961209_29961343
83284	chr2	+	2503	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	34	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961101_29961167
83285	SIRV3	-	1434	7	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	664.744562469926	52853	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_4573_4774_6056_6334_8755_8976_9189_9299_9434
83286	chr2	+	2376	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	248	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	16461	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTGGACTGGGGTCA	NA	False	NA	NA	False	NA	NA	NA	29952112	29962578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961329_29961517
83287	chr7	-	1157	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-63684	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5406.63746647374	399	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	NA	False	NA	NA	False	NA	NA	NA	99196629	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798_99132977_99196422
83288	chr2	+	1739	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	312	at_least_one_novel_splicesite	FALSE	canonical	1	342	junction_7	5706.51241645751	2123	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTTGAAGTGTACAAGT	NA	False	NA	NA	False	NA	NA	NA	29952110	29961753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960933
83289	chr5	+	1068	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	146	1163	13	-1163	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	18637	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAACAAGTGAATCATCC	488	False	NA	NA	False	NA	NA	NA	129097278	129100224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
83290	chr15	-	1003	2	ISM	ENSMUSG00000018042.19	ENSMUST00000162834.3	1982	9	11309	269	11309	-269	3prime_fragment	FALSE	canonical	3	1513	junction_1	0	31	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCGACTCCATGCAGTC	9812	False	NA	NA	False	NA	NA	NA	83043069	83037963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_83038924_83043026
83291	chr2	+	2483	7	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	245	-54	intron_retention	FALSE	non_canonical	0	0	junction_3	7522.6699031808	3	123	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATACGTCAGGAATCTT	NA	False	NA	NA	False	NA	NA	NA	29952109	29962535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959087_29959437_29959651_29960205_29960368_29960452_29960600_29960930
83292	chr15	-	1003	2	ISM	ENSMUSG00000018042.19	ENSMUST00000162834.3	1982	9	11309	269	11309	-269	3prime_fragment	FALSE	canonical	3	1513	junction_1	0	149	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCCGACTCCATGCAGTC	9812	False	NA	NA	False	NA	NA	NA	83043069	83037963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_83038924_83043026
83293	chr2	+	2570	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	8	246	-8	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	1617	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83294	chr2	+	1694	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	884	246	264	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	2493	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	29952110	29961705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83295	chr16	-	2125	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1202	-3	697	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	162	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGCCAAGTAGAACTGGAA	NA	False	NA	NA	False	NA	NA	NA	22084679	22064500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
83296	chr2	+	3637	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	-1059	246	1059	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	105	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCCAGAGCTACAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	29952110	29963648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83297	chr10	+	1348	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	70	635	0	-12	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	16294	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGGTCTTTATTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	126899472	126903154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
83298	chr2	+	1831	7	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6009.9930786612	43	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960372_29961526
83299	chr2	-	2572	8	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	204	62	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGCCTCAGGTGCGGG	NA	False	NA	NA	False	NA	NA	NA	29962582	29952110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29952291_29958278_29958336_29958968_29959113_29959336_29959442_29959527_29959642_29960194_29960365_29960449_29960598_29960928
83300	chr2	+	2456	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	251	-71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7094.70864627366	6123	109	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTAGTAAATACATCACTG	NA	False	NA	NA	False	NA	NA	NA	29952115	29962518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959438_29959529_29959644_29960196_29960368_29960452_29960559_29960930
83301	chr1	-	1856	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	57	2581	57	-2581	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	5945	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTCTTAAAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	13730713	13696134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
83302	chr18	+	967	1	Antisense	novelGene_ENSMUSG00000091957.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11419	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAGATTCTTTTATTATA	NA	False	NA	NA	False	NA	NA	NA	61392091	61393058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_61392100_61393100
83303	chr2	+	2129	6	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	367	intron_retention	FALSE	canonical	0	0	junction_3	6508.61984141031	1019831	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGATGCTTTTCTGTCA	NA	False	NA	NA	False	NA	NA	NA	29952110	29961808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959665_29960196_29960368_29960452_29960600_29960930
83304	chr12	+	4598	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	98	-581	4	581	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	8	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACCTTCAGAGAGATTTT	9263	False	NA	NA	False	NA	NA	NA	100165791	100176654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
83305	chr2	+	2534	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5816.56168511387	266	126	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCAGGAATCTTGCTCCAA	NA	False	NA	NA	False	NA	NA	NA	29952110	29962542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958277_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
83306	chr2	+	1728	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7844.75281799944	857	73	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGTGTACAAGTTGCT	NA	False	NA	NA	False	NA	NA	NA	29952110	29961757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959087_29959326_29959434_29959529_29959651_29960196_29960368_29960452_29960600_29960930
83307	chr17	+	1042	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	-17	-3	0	-1	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	158	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
83308	chr2	+	2183	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6908.50843050618	1154	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGACTGGGGTCATT	NA	False	NA	NA	False	NA	NA	NA	29952110	29962580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959091_29959296_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961308_29961711
83309	chr11	-	9058	9	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	83	10564	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	570.669987273731	146	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTCCCCAGCATCAGCG	NA	False	NA	NA	False	NA	NA	NA	60702008	60668365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60671206_60674577_60679020_60679176_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688414_60701729
83310	chr2	-	1789	8	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCGGCCTCAGGTGCGGG	NA	False	NA	NA	False	NA	NA	NA	29961801	29952110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29952291_29958278_29958336_29958968_29959113_29959336_29959442_29959527_29959642_29960194_29960365_29960449_29960596_29960928
83311	chr7	-	1157	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-63684	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5406.63746647374	3	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	NA	False	NA	NA	False	NA	NA	NA	99196629	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798_99132977_99196422
83312	chr2	+	2101	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	247	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7395.31857436355	1626	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTGGACTGGGGTCATT	NA	False	NA	NA	False	NA	NA	NA	29952111	29962580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959494_29960196_29960368_29960452_29960600_29960930_29961308_29961711
83313	chr2	+	2514	9	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5496.39693202511	71315	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACTGGGGTCATTCTCC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930_29961224_29961282
83314	chr6	-	1191	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	31	6	31	-6	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	286	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTCTCGGGCTGATTG	9997	False	NA	NA	False	NA	NA	NA	125471723	125437234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
83315	chr2	+	1593	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	8	95	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	112610	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83316	chr6	-	1191	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	31	6	31	-6	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	49146	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTCTCGGGCTGATTG	9997	False	NA	NA	False	NA	NA	NA	125471723	125437234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
83317	chr7	-	1157	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-63684	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5406.63746647374	87	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	NA	False	NA	NA	False	NA	NA	NA	99196629	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798_99132977_99196422
83318	chr8	+	1146	13	Antisense	novelGene_ENSMUSG00000110471.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9886	7	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTCCGGCTCCGCCCCCC	NA	False	NA	94	True	NA	NA	NA	84298326	84321084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_84298567_84298643_84298690_84298862_84298953_84299029_84299085_84299177_84299224_84299310_84299383_84299469_84299579_84299656_84299769_84299841_84299953_84300039_84300085_84300499_84300547_84301100_84301156_84320966
83319	chr7	-	1157	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-63684	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5406.63746647374	4232	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	NA	False	NA	NA	False	NA	NA	NA	99196629	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798_99132977_99196422
83320	chr14	+	1651	3	Antisense	novelGene_ENSMUSG00000072714.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	396137	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCATCTACATCTCATGTA	NA	False	NA	NA	False	NA	NA	NA	11241746	11290144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_11242195_11288882_11290027_11290085
83321	chrM	+	5212	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-287	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	987	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	2	True	NA	NA	False	NA	NA	NA	9879	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
83322	chr5	-	989	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	146	105	46	-105	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCTCTTAAGCCCCTTGC	NA	False	NA	NA	False	NA	NA	NA	117425544	117420823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
83323	chr2	+	1591	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	10	95	-10	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	289053	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTTTTATTTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83324	chr9	+	1030	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	98	810	-2	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	1072	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956852	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
83325	chr14	+	1781	5	NNC	ENSMUSG00000012405.17	novel	1922	4	NA	NA	-13	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5790.55370841166	37	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGACCTATGTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	4198712	4201867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379_4201709_4201759
83326	chr2	-	859	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	-32	-77	-32	77	mono-exon	FALSE	NA	NA	NA	NA	NA	1438	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTCAAATGGCACAACAA	NA	False	NA	NA	False	NA	NA	NA	75022198	75021339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75021300_75022200
83327	chr7	+	835	7	Antisense	novelGene_ENSMUSG00000065822.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21818	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCGCGGGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	99128091	99132858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99128156_99128474_99128676_99129080_99129270_99130902_99130999_99131467_99131564_99131778_99131908_99132798
83328	chr5	+	1048	9	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	1	66708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2486.84023599728	245	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTTCCAAAGGTCCTGA	NA	False	NA	NA	False	NA	NA	NA	108048438	108123579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762_108055919_108123552
83329	chr6	+	1867	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	482	92	-23	-92	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	72189	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5092	False	NA	NA	False	NA	NA	NA	85428977	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
83330	chr12	-	1067	1	FSM	ENSMUSG00000066553.6	ENSMUST00000140065.2	342	1	-54	-671	-54	671	mono-exon	FALSE	NA	NA	NA	NA	NA	81576	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGTTAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	24689063	24687996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_24688000_24689100
83331	chrM	+	2470	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6944	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2718_2864
83332	chr11	+	3483	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	21	-1600	21	1600	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	2722	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGAGGAGGTATGGTATG	NA	False	NA	NA	False	NA	NA	NA	107370330	107390599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
83333	chr2	+	2691	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	5	2454	5	832	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	320	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCGTGCTAGTATTTCAA	7486	False	NA	NA	False	NA	NA	NA	75489615	75497297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
83334	chr16	-	2122	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	-29	0	29	mono-exon	FALSE	NA	NA	NA	NA	NA	38346	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAATTGTGGCTCGAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973300_45975400
83335	chr7	-	709	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	-25	-59	-25	21	mono-exon	FALSE	NA	NA	NA	NA	NA	159	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTACTGGCCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	92828877	92828168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92828200_92828900
83336	chr11	+	1164	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	2	-172	-2	multi-exon	FALSE	canonical	3	35417	junction_1	0	6736	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
83337	SIRV3	-	1707	10	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	586.241512613284	69262	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_4567_4784_6061_6291_7263_7370_7872_7989_8124_8208_8755_8976_9189_9299_9434
83338	chr1	-	2071	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	7	-1532	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	1861	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAAACTG	NA	False	NA	NA	False	NA	NA	NA	13730763	13695085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695259_13696142_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
83339	chr1	+	1627	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	307	5	1	-5	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	10961	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACATCACAGCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	63216290	63219640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
83340	chr6	+	1867	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	482	92	-23	-92	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	13197	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTTGGTGTGTTTTTCA	5092	False	NA	NA	False	NA	NA	NA	85428977	85445365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
83341	chr2	+	1593	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	8	95	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	30461	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83342	chr2	-	1224	11	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-1897	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1369.51858694944	137	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGTCTCATTATTAATAA	9906	False	NA	NA	False	NA	NA	NA	10087218	10060841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158_10085224_10087061
83343	chr14	-	891	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	8	0	-6	0	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	4124	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8632	False	NA	NA	False	NA	NA	NA	54855471	54851575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54851939_54853971_54854279_54855250
83344	chr9	+	856	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	52	203	22	9	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	4611	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGACTTTTTTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	14411964	14421670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
83345	chrM	+	6303	4	Genic_Genomic	ENSMUSG00000064354.1_ENSMUSG00000064345.1_ENSMUSG00000064339.1_ENSMUSG00000064351.1_ENSMUSG00000064357.1_ENSMUSG00000064341.1	novel	1545	1	NA	NA	594	783	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11159	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCTTAGTATAATTAAT	73	False	NA	-19	True	NA	NA	NA	1687	9390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_1695_2751_3091_3286_8800_8946
83346	chrM	+	3385	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9348	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13974_14135
83347	chr12	+	4305	4	FSM	ENSMUSG00000051721.7	ENSMUST00000223551.2	4317	4	11	1	11	-1	multi-exon	FALSE	canonical	3	7	junction_3	4.49691252107735	109	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCAGCTCTCACACGTT	NA	False	NA	NA	False	NA	NA	NA	4893313	4910042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_4893452_4900126_4901943_4905277_4905393_4907806
83348	chr8	-	3101	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-482	-847	-482	843	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	948	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGCCCAGTCATTTTT	NA	False	NA	NA	False	NA	NA	NA	43760499	43747256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
83349	chr2	-	2696	11	Antisense	novelGene_ENSMUSG00000093242.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	293059	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGCGGGGCCAGTCAC	NA	False	NA	NA	False	NA	NA	NA	75497297	75489610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_75489666_75491807_75491932_75492013_75492160_75492237_75492450_75492829_75492919_75493002_75493099_75493186_75493269_75493913_75494057_75495369_75495494_75495576_75495644_75495739
83350	chr11	+	1964	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	-58	-1380	-58	-1075	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	70	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCGGGTTCAGTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	68792350	68796740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
83351	chr8	-	1132	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-73	-105	-73	105	mono-exon	FALSE	NA	NA	NA	NA	NA	410810	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTTGGCCATTTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	103592503	103591371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592500
83352	chr11	+	1010	4	Antisense	novelGene_ENSMUSG00000020738.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36882	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGGCGCGCGCACGTCGT	1100	False	NA	NA	False	NA	NA	NA	115413927	115427061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115414596_115421171_115421243_115425376_115425512_115426925
83353	chr11	-	928	6	NNC	ENSMUSG00000006057.16	novel	4715	5	NA	NA	-183	1644	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4443.97025192564	376063	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAATTTTTTTTTTAAAA	3296	False	NA	NA	False	NA	NA	NA	95966679	95962168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95962340_95963818_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
83354	chr2	+	1593	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	8	95	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	670	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83355	chr5	+	1312	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	-2	-22	2	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	76	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAAGCCTGGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
83356	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	32755	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
83358	chrM	+	2673	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-56	-1035	-56	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1446	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	344	False	NA	-34	True	NA	NA	NA	1037	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_3700
83359	chr1	-	1856	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	57	2581	57	-2581	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTCTTAAAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	13730713	13696134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
83360	chr9	+	910	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	67	0	67	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	21533	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78099295	78116631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
83361	chr2	+	1593	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	8	95	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	208839	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83362	chr5	+	1096	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	214	-22	-214	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	827	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCGGTCTGGATTTATT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
83363	chr5	+	1075	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	318	212	162	-212	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	852	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697843	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
83364	chr9	+	713	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	71	225	1	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	4829	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400580	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
83365	chr5	+	943	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	274	-12	1	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	1051485	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
83366	chr2	-	2409	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-5	5866	intron_retention	FALSE	non_canonical	0	0	junction_1	4169.46393510879	101	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTAGGTGTTTCTTGTTTTT	3767	False	NA	NA	False	NA	NA	NA	154734720	154707463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154707482_154713345_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83367	chr4	+	1787	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	234	6	-54	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	33124	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150321642	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
83368	chr2	-	1398	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	2	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	8	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3738	False	NA	NA	False	NA	NA	NA	154734749	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83369	chr10	-	1019	2	Genic_Genomic	ENSMUSG00000112697.2	novel	463	1	NA	NA	-22302	43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	966	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTCACCATAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81711414	81688606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_81689123_81710911
83370	SIRV3	-	1405	7	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	664.744562469926	4	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_4567_4774_6056_6295_8751_8976_9189_9299_9434
83371	chr10	-	1323	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	72	217	16	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	286	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959849	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
83372	chr14	+	3115	7	Antisense	novelGene_ENSMUSG00000021807.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	67	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGGCGGGGCGGTGACC	NA	False	NA	NA	False	NA	NA	NA	19861998	19873886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_19862306_19862416_19864673_19866251_19866342_19867128_19867216_19869974_19870077_19872635_19872759_19873736
83373	chr12	-	792	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	32	-318	0	-17	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	573	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTCTCACTGAGT	NA	False	NA	NA	False	NA	NA	NA	80690574	80680812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
83374	chr11	+	1277	2	Antisense	novelGene_ENSMUSG00000082806.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3919	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTATTCTAGAAAAAGAATGA	5441	False	NA	NA	False	NA	NA	NA	84963267	85002666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_84963791_85001912
83375	chr9	-	2286	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	30	4	-1	-4	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	2413	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACTTGGGTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100916921	100864088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
83376	chr15	-	1811	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	3	7	3	-7	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	400523	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGGCCCTGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	75952758	75942045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
83377	chr10	+	1356	10	Fusion	ENSMUSG00000061315.15_ENSMUSG00000085993.3	novel	885	8	NA	NA	111	0	multi-exon	FALSE	canonical	0	0	junction_1	4703.23536396903	52	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	NA	False	NA	NA	False	NA	NA	NA	127757048	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_127757478_127757704_127757804_127871500_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83378	chr17	-	2098	6	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	77	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCACCACCGTCCCCTCG	2261	False	NA	NA	False	NA	NA	NA	29261869	29251646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29251759_29255212_29255421_29257461_29257597_29259746_29259788_29260177_29260265_29260354
83379	chr2	+	1469	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	72	0	6	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	246	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8619	False	NA	NA	False	NA	NA	NA	61542109	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
83380	chr19	+	922	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	0	7	0	-1	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	3094	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTCTTTTCTTTGTGAT	4869	False	NA	NA	False	NA	NA	NA	9960009	9962455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
83381	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	528	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83382	chrX	-	1041	8	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	-1917	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5653.19430381927	722979	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101234917	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903_101232918_101234767
83383	chrM	+	2343	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	-1226	-433	-1226	433	mono-exon	FALSE	NA	NA	NA	NA	NA	154	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTAATAATTGTTTCCC	9	True	NA	97	True	NA	NA	NA	5786	8129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_8100
83384	chr1	-	2054	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	7	-1533	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	64150	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAACAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	13730763	13695086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695259_13696158_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
83385	chr12	+	2176	7	Antisense	novelGene_ENSMUSG00000061477.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13485	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAGGTGGGGACAGCGG	4354	False	NA	NA	False	NA	NA	NA	28679603	28685922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_28681191_28681620_28681774_28683766_28683832_28684207_28684352_28685411_28685486_28685577_28685662_28685853
83386	chr7	-	832	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	989	0	-3	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	164	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
83387	chr7	-	2229	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	-57	-1	-57	1	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	34799	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTTTGTTAACTCTGAG	NA	False	NA	NA	False	NA	NA	NA	117728942	117718112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
83388	chr7	-	832	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	989	0	-3	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	626	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
83389	chr2	-	2409	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-5	5866	intron_retention	FALSE	non_canonical	0	0	junction_1	4169.46393510879	31	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTAGGTGTTTCTTGTTTTT	3767	False	NA	NA	False	NA	NA	NA	154734720	154707463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154707482_154713345_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83390	chr18	+	1980	1	ISM	ENSMUSG00000024597.12	ENSMUST00000115366.3	6520	27	66152	12	17625	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	4076	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAATACTTACTCTTGCC	NA	False	NA	NA	False	NA	NA	NA	58077901	58079881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_58077900_58079900
83391	chr1	-	1465	8	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-50097	501	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1078.04556717142	130	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAATTCTCTTAGGGATT	4183	False	NA	NA	False	NA	NA	NA	4906059	4844157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4844580_4844625_4844740_4846632_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795_4855870_4906041
83392	chr15	-	2179	14	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	2224	-411	-66	411	3prime_fragment	FALSE	canonical	3	1461	junction_9	116.483637777254	4	69	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTACACAGAAACCCTGTC	4969	False	NA	NA	False	NA	NA	NA	77852789	77842786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656
83393	chr9	+	758	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-224	-44	224	mono-exon	FALSE	NA	NA	NA	NA	NA	129	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83394	chr14	-	1097	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	30	46	1	10	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	82	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAGGGTGAAAACAGA	NA	False	NA	NA	False	NA	NA	NA	31923825	31902164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
83395	chr18	+	1755	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	-7	-1	7	mono-exon	FALSE	NA	NA	NA	NA	NA	22999	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
83396	chrM	-	2613	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	965	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	-3	True	NA	3	True	NA	NA	NA	3706	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_3700
83397	chr19	+	904	1	Intergenic	novelGene_1200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9353	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTATGAGGATCCTG	NA	False	NA	NA	False	NA	NA	NA	5623469	5624373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_5623500_5624400
83398	chr2	+	1593	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	8	95	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	2729	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83399	chr6	-	2038	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	34	13	-19	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	302	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294554	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83400	chr4	+	6683	6	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	209	4149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	56.1355502333414	20	148	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACAGTGTACTTACATGTA	NA	False	NA	NA	False	NA	NA	NA	147216703	147269185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147216818_147219028_147219133_147260287_147260362_147261203_147261331_147262781_147264324_147264463
83401	chr11	+	1807	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	13	-73	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	71043	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
83402	chr2	+	2397	10	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1626	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCACTAGGCTCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	154707463	154734720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154707471_154713346_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102_154730283_154734611
83403	chr10	+	1356	10	Fusion	ENSMUSG00000061315.15_ENSMUSG00000085993.3	novel	885	8	NA	NA	111	0	multi-exon	FALSE	canonical	0	0	junction_1	4703.23536396903	21	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	NA	False	NA	NA	False	NA	NA	NA	127757048	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_127757478_127757704_127757804_127871500_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83404	chr11	+	736	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	29	277	-7	8	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	159145	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	51510590	51514264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
83405	chr2	+	2397	10	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50475	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCACTAGGCTCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	154707463	154734720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154707471_154713346_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102_154730283_154734611
83406	chr2	-	2409	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-5	5866	intron_retention	FALSE	non_canonical	0	0	junction_1	4169.46393510879	15504	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTAGGTGTTTCTTGTTTTT	3767	False	NA	NA	False	NA	NA	NA	154734720	154707463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154707482_154713345_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83407	chr2	+	1591	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	10	95	-10	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	284	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTTTTATTTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83408	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	126	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
83409	chr1	-	3453	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-50097	496	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	884.264304379635	9491	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATACAAATTCTCTTAG	4183	False	NA	NA	False	NA	NA	NA	4906059	4844162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795_4855924_4906041
83410	chr2	-	675	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	39	0	4	0	multi-exon	FALSE	canonical	3	2058	junction_4	989.165146727279	34	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	NA	False	NA	NA	NA	73741631	73738790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
83411	chr7	-	1017	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	5	0	-5	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	45803	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
83412	chr17	-	914	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	375	648	8	-10	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGATAAAATGCTTAGTTG	2302	False	NA	NA	False	NA	NA	NA	71309174	71301298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
83413	chrX	-	718	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	-37	-30	-37	30	mono-exon	FALSE	NA	NA	NA	NA	NA	68387	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGCCCAAGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	151693188	151692470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693200
83414	chr17	+	916	4	Antisense	novelGene_ENSMUSG00000024048.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	229	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTCCAGACTCCGCAGT	NA	False	NA	NA	False	NA	NA	NA	71301298	71309174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_71301776_71303098_71303266_71303690_71303890_71309101
83415	chr5	+	3749	12	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	5	78019	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	3592.21656749264	215	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCAGTCGGAGGCGGACC	NA	False	NA	NA	False	NA	NA	NA	108048372	108134890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762_108058085_108059479_108059659_108062213_108062320_108072450_108072585_108134813
83416	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
83417	chr17	-	1473	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	34	-218	-31	215	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	152	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAGGCATGCACCAG	NA	False	NA	NA	False	NA	NA	NA	46985244	46978168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
83418	chr12	-	655	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	74	225	-1	4	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	30	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGTAGTAACTTGTCAAAA	NA	False	NA	NA	False	NA	NA	NA	28685878	28681077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
83419	chr16	-	2122	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	-29	0	29	mono-exon	FALSE	NA	NA	NA	NA	NA	82	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAATTGTGGCTCGAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973300_45975400
83420	chr11	-	1154	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	5	-2	0	2	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	21447	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	NA	False	NA	NA	NA	33113072	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
83421	SIRV3	-	1434	7	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	664.744562469926	2	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_4573_4774_6056_6334_8755_8976_9189_9299_9434
83422	chr2	+	1561	15	ISM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	4494	8	4494	-8	3prime_fragment	FALSE	canonical	3	2559	junction_4	228.633395618043	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31364712	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83423	chr6	-	1606	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	58	-3	0	3	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	6940	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828004	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
83424	chr14	-	809	6	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGCCGACGCGGGCGCT	NA	False	NA	NA	False	NA	NA	NA	76085738	76082775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082897_76083056_76083129_76083640_76083834_76084133_76084238_76084681_76084801_76085538
83425	chr19	-	897	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	62	-138	2	138	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	145	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGGGGTTAAGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	4087923	4085268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
83426	chrX	+	1765	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	50	10	-13	-10	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	1086	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGGAAGTTTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	105230755	105247295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
83427	chr19	+	866	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	58	5	0	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4927	False	NA	NA	False	NA	NA	NA	9960067	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
83428	chr2	-	2409	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-5	5866	intron_retention	FALSE	non_canonical	0	0	junction_1	4169.46393510879	101665	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTAGGTGTTTCTTGTTTTT	3767	False	NA	NA	False	NA	NA	NA	154734720	154707463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154707482_154713345_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83429	chr12	+	1631	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-590	251	-10	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	1996	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAATAACTCCATGTTC	NA	False	NA	NA	False	NA	NA	NA	72132881	72148225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
83430	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	993914	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83431	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83432	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	313	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83433	chr10	+	1599	1	FSM	ENSMUSG00000046687.7	ENSMUST00000053865.7	1240	1	-99	-260	-99	260	mono-exon	FALSE	NA	NA	NA	NA	NA	20	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAATAAGACAAAGGGGT	NA	False	NA	NA	False	NA	NA	NA	61906802	61908401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61906800_61908400
83434	chr13	+	919	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	31	-12	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	1709	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCAAAAAAAACAAAAAAACA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
83435	chr4	-	2532	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	448	0	0	0	3prime_fragment	FALSE	canonical	3	774	junction_12	215.450595691155	140	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484690	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
83436	chr18	+	1531	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	197	214	197	-214	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	3719	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTATAAATTGTTCAGCT	NA	False	NA	NA	False	NA	NA	NA	56706090	56720570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
83437	chr11	-	1010	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	41	0	-6	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427061	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
83438	chrX	+	1368	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	-131	3	-131	-3	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059172	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
83439	chr2	+	1575	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	113	8	113	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	12845	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360331	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83440	chr13	-	2736	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	17943	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	4766	False	NA	NA	False	NA	NA	NA	58550315	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
83441	chr17	-	1461	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	34	-206	-31	203	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	1845	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACTTAA	NA	False	NA	NA	False	NA	NA	NA	46985244	46978180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
83442	chrM	+	3458	2	Genic_Genomic	ENSMUSG00000064359.1_ENSMUSG00000064354.1_ENSMUSG00000064357.1_ENSMUSG00000064351.1_ENSMUSG00000064353.1	novel	684	1	NA	NA	459	-67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	303349	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	9	True	NA	97	True	NA	NA	NA	5786	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8800_8946
83443	chr1	+	2160	7	NNC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	-20	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	95.8401446854779	1280	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTTAAAAAAAGGACACACT	NA	False	NA	NA	False	NA	NA	NA	58484766	58501421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494713_58494895_58496938_58497023_58500299
83444	chr5	+	1660	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	75	532	-55	-532	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	911	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45650790	45669501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
83445	chr8	-	1101	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-73	-74	-73	74	mono-exon	FALSE	NA	NA	NA	NA	NA	4691	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592503	103591402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592500
83446	SIRV3	-	1434	7	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	664.744562469926	221	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_4573_4774_6056_6334_8755_8976_9189_9299_9434
83447	chr2	-	1361	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	156	1025	3	-1017	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	37097	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3788	False	NA	NA	False	NA	NA	NA	154734699	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83448	chr15	+	844	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	7	0	7	0	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	44	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	76788284	76790514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
83449	chr2	+	1344	1	Antisense	novelGene_ENSMUSG00000096006.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	716696	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCAAGAACCCATTTTCAA	NA	False	NA	NA	False	NA	NA	NA	113750138	113751482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_113750100_113751500
83450	chr19	-	844	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	46	0	4	0	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	5694	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	8775895	8770490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
83451	SIRV7	-	917	5	NNC	SIRV7A	novel	889	6	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	1736.72714825905	9488	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAGAGATCGACGAAGT	NA	False	NA	NA	False	NA	NA	NA	147957	56032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV7_-_56098_70883_70988_78841_78966_114685_114961_147608
83452	chr14	+	1607	1	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	14736	3	14273	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8715	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTGGTGCCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	99550862	99552469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_99550900_99552500
83453	chr11	+	1791	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	218	13	-57	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	741	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5349	False	NA	NA	False	NA	NA	NA	52251904	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
83454	chr3	+	1320	8	ISM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	2194	186	2106	70	3prime_fragment	FALSE	canonical	3	1982	junction_2	114.955182038702	1978	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGTGTGTGAGTTGAA	7118	False	NA	NA	False	NA	NA	NA	138151047	138161074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
83455	chr4	+	2809	5	Antisense	novelGene_ENSMUSG00000028495.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1113	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTCCGCTTAACCCAGGG	NA	False	NA	NA	False	NA	NA	NA	86770924	86775608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_86773189_86774099_86774250_86774381_86774593_86774963_86775097_86775557
83456	chr11	-	843	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	-52	0	-52	0	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	293	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	NA	False	NA	NA	NA	29498161	29495845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
83457	chr4	+	6270	9	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-393457	4184	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	108.164154760253	176	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAAAAATAATTCTCA	NA	False	NA	NA	False	NA	NA	NA	145158349	145560696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145158390_145236695_145236958_145507644_145508381_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256_145559093_145560624
83458	chr16	-	2042	2	Fusion	ENSMUSG00000022940.18_ENSMUSG00000114993.2	novel	805	4	NA	NA	6149	386	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1001445	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTAGTTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	94160227	94042746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_94044170_94159608
83459	chr8	+	680	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	65	0	-21	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	3571	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	121395025	121400946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
83460	chrX	+	907	7	Antisense	novelGene_ENSMUSG00000031320.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5211	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGCCTTCTTCCGGCGAA	NA	False	NA	NA	False	NA	NA	NA	101228547	101232929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_101228735_101229102_101229271_101230004_101230174_101230960_101231059_101231427_101231608_101231898_101231977_101232902
83461	chrX	+	907	7	Antisense	novelGene_ENSMUSG00000031320.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57012	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGCCTTCTTCCGGCGAA	NA	False	NA	NA	False	NA	NA	NA	101228547	101232929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_101228735_101229102_101229271_101230004_101230174_101230960_101231059_101231427_101231608_101231898_101231977_101232902
83462	chr14	+	1545	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	-32	0	-32	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	4669	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	NA	NA	NA	14296715	14303777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
83463	chr1	-	3270	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-50097	500	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1054.3829664785	9655	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAAATTCTCTTAGGGAT	4183	False	NA	NA	False	NA	NA	NA	4906059	4844158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4844580_4844625_4847025_4847747_4847872_4852790_4852957_4854173_4854316_4906041
83464	chr2	+	1187	3	Genic_Genomic	ENSMUSG00000082064.4	novel	891	1	NA	NA	-6652	1121	multi-exon	FALSE	non_canonical	0	0	junction_1	0	70	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGGAGCCAGCGGGGCT	2764	False	NA	NA	False	NA	NA	NA	154539076	154547740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_154539085_154545681_154546659_154547538
83465	chr3	-	1928	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	-37	0	-37	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	2283	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30702055	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
83466	chr17	+	5833	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3356	-628	-3356	628	mono-exon	FALSE	NA	NA	NA	NA	NA	9685	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153887	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
83467	chr16	-	2089	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	13516	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
83468	chr11	-	1265	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	76	2	76	-2	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	1241	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCCAACTCAGTTGTT	6347	False	NA	NA	False	NA	NA	NA	69812136	69807547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
83469	chr19	-	715	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	3	-4	3	4	mono-exon	FALSE	NA	NA	NA	NA	NA	305	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTAGTAAAAATGTGTAGC	NA	False	NA	NA	False	NA	NA	NA	32443975	32443260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_32443300_32444000
83470	chrX	+	907	7	Antisense	novelGene_ENSMUSG00000031320.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3129	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGCCTTCTTCCGGCGAA	NA	False	NA	NA	False	NA	NA	NA	101228547	101232929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_101228735_101229102_101229271_101230004_101230174_101230960_101231059_101231427_101231608_101231898_101231977_101232902
83471	chr7	-	886	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	46	36	1	-15	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGGACCAAGTAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	45109262	45107403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
83472	chr5	-	2128	8	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-116490	-2	intron_retention	FALSE	non_canonical	0	0	junction_6	1862.41190998366	469	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	9174	False	NA	NA	False	NA	NA	NA	143008999	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406_142892493_142925478_142925686_143008979
83473	chr1	-	734	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-49	-31	49	mono-exon	FALSE	NA	NA	NA	NA	NA	9976	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
83474	chr6	-	1765	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	38	282	-15	-282	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	152117	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTTTTCTTTGGCGGG	NA	False	NA	NA	False	NA	NA	NA	83294550	83282954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83475	chr1	-	612	6	NNC	ENSMUSG00000090553.9	novel	503	5	NA	NA	-25069	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1700.39426016439	34687	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	NA	False	NA	NA	NA	133563098	133531613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455_133537483_133537901_133537975_133562929
83476	chr18	+	1755	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	-7	-1	7	mono-exon	FALSE	NA	NA	NA	NA	NA	204315	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
83477	chr10	+	1773	9	NNC	ENSMUSG00000061315.15	novel	6745	9	NA	NA	28	2157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	3777.7938316397	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTTATGTGTAGTGCGCT	4940	False	NA	NA	False	NA	NA	NA	127871471	127886663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361_127885056_127886300
83478	chrX	+	1390	5	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	-1596	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5140.90018260421	15526	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCAGTTTTGTTCGTTGTT	NA	False	NA	NA	False	NA	NA	NA	36057707	36062455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36057870_36059310_36059495_36060495_36060983_36061388_36061530_36062039
83479	chr14	+	2750	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	-1174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	11753	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAACTTGGGGTCTTATT	NA	False	NA	NA	False	NA	NA	NA	63359964	63382198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63381173_63381937
83480	chr10	-	1789	3	Genic_Genomic	ENSMUSG00000045055.6_ENSMUSG00000118400.2	novel	880	1	NA	NA	-70	-62	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1055	44	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACCACCCTCATGACATC	NA	False	NA	NA	False	NA	NA	NA	128613189	128512088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_128512740_128596936_128597052_128612166
83481	chr18	-	2245	19	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6160	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCCACAGCGCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	32996097	32970470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970624_32974085_32974195_32974947_32975066_32976812_32976948_32978643_32978696_32979879_32980014_32980192_32980370_32980640_32980763_32981348_32981414_32982124_32982210_32983436_32983589_32985033_32985153_32985542_32985701_32985913_32986025_32987831_32987912_32992271_32992380_32994078_32994175_32994551_32994704_32995978
83482	chr10	+	2522	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	15	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	282.238956209746	18	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7005	False	NA	NA	False	NA	NA	NA	60113464	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129194_60130363_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83483	chr4	+	2109	14	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	132803	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	5592.33966661053	3906	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTAGAGAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	150321696	150466139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942_150333334_150397133_150397278_150465910
83484	SIRV5	+	4474	19	NNC	SIRV5A	novel	2085	17	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_16	3686.00025831808	943	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8556_10848_10992_11133_12836_12880
83485	chr12	+	1459	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	256	1690	-10	-1690	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	261	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTAGGCTTCTTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	78908848	78932094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
83486	chr6	+	714	8	NNC	ENSMUSG00000029911.15	novel	933	7	NA	NA	2	14022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1246.75999687026	36890	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCATTCATTTTAGCC	NA	False	NA	NA	False	NA	NA	NA	40448388	40475656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40448608_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786_40457827_40475643
83487	chr4	+	1762	3	Genic_Genomic	ENSMUSG00000083025.2_ENSMUSG00000105333.2_ENSMUSG00000081715.2	novel	486	1	NA	NA	-27	9	multi-exon	FALSE	non_canonical	0	0	junction_1	0	137098	50	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAATTAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	10946580	11134191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_10947280_11114452_11114565_11133240
83488	chr2	+	1469	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	72	0	6	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8619	False	NA	NA	False	NA	NA	NA	61542109	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
83489	chr17	-	1107	2	Genic_Genomic	ENSMUSG00000118161.2	novel	882	1	NA	NA	-1564	58	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6835	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAACACACACACACACAA	5715	False	NA	NA	False	NA	NA	NA	31865317	31862813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_31863754_31865150
83490	chr18	+	3368	21	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	-15238	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2729.48331145292	38478	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAATGTGTCTTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	77846190	77870563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77846218_77847136_77847209_77848167_77848233_77848605_77848731_77849681_77849815_77851770_77851909_77854563_77854737_77856041_77856198_77857382_77857426_77861457_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
83491	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	8884	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83492	chr11	-	1753	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	60	14	60	-14	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	3488	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGCAGTAACTGACCATT	NA	False	NA	NA	False	NA	NA	NA	120238857	120236530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
83493	chrX	+	2625	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	19	-6	0	6	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	39	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTTTCCAGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	104123380	104128798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
83494	chr4	+	698	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33246	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	272.465337244942	9	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	146500233	146550672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500373_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
83495	chr1	+	5130	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	3	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	99.1793703347627	1175	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACCCCAACAGACTTAGAA	8322	False	NA	NA	False	NA	NA	NA	191307876	191355759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318689_191323920_191324022_191326540_191326586_191328284_191328485_191328998_191329122_191334417_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
83496	chr6	-	2034	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	38	13	-15	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	473	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294550	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83497	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	221	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
83498	chr17	-	643	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	-34	-168	-34	168	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCATCCTGGGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	5866949	5866306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_5866300_5866900
83499	chr18	-	2228	19	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	689	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCCACAGCGCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	32996080	32970470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970624_32974085_32974195_32974947_32975066_32976812_32976948_32978643_32978696_32979879_32980014_32980192_32980370_32980640_32980763_32981348_32981414_32982124_32982210_32983436_32983589_32985033_32985153_32985542_32985701_32985913_32986025_32987831_32987912_32992271_32992380_32994078_32994175_32994551_32994704_32995978
83500	chr6	-	3975	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-551	1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_10	3637.95830102545	48646	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	818	False	NA	NA	False	NA	NA	NA	122779150	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122774760_122774839_122778826
83501	chr7	-	969	9	NNC	ENSMUSG00000074129.15	novel	734	8	NA	NA	0	440	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7063.22806866662	124	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAAATGCTTCCCATGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44774705_44775355_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
83502	chr7	-	924	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	-270	7	-270	7	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	33355	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACAGGCTTGGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	44774133	44771809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
83503	chr14	+	1756	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	84	82	-13	-82	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	2	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTTTCTATTCAGCAAA	NA	False	NA	NA	False	NA	NA	NA	4198712	4201791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
83504	chr11	-	1250	5	NNC	ENSMUSG00000020738.17	novel	1051	4	NA	NA	-26	1548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1749.10582512894	483	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCCAGGCTATCAGCTGA	NA	False	NA	NA	False	NA	NA	NA	115427128	115412379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115412561_115413935_115414596_115421171_115421244_115425377_115425510_115426923
83506	chr13	-	1789	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	27	89	27	-89	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	6286	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334838	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
83507	chr4	-	2249	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	11	6	1	-6	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	8620	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	6	True	NA	NA	False	NA	NA	NA	34614902	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
83508	chr16	+	1670	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	7	-3	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	596	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTCAAGTCTGAAAGC	NA	False	NA	NA	False	NA	NA	NA	36648753	36679931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
83509	chr4	-	1671	2	Genic_Genomic	ENSMUSG00000081260.2	novel	339	1	NA	NA	-68	198652	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28042	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGTTTGTAAGCAAATG	NA	False	NA	NA	False	NA	NA	NA	147033023	146833964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_146835067_147032454
83510	chr16	+	1663	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-32	-662	-32	662	mono-exon	FALSE	NA	NA	NA	NA	NA	12640	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAATCTACCAACT	NA	False	NA	NA	False	NA	NA	NA	24348111	24349774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24349800
83511	chr10	-	2048	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-87	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	615.967192488547	19437	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899806	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897196_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
83512	chr11	-	1393	15	NNC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	-136244	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	555.057218047043	11198	7	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119327159	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653_119190721_119257488_119257533_119310450_119310458_119327131
83513	chr5	+	1098	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	212	-22	-212	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	2078	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
83514	chr18	-	2228	19	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	285	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCCACAGCGCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	32996080	32970470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970624_32974085_32974195_32974947_32975066_32976812_32976948_32978643_32978696_32979879_32980014_32980192_32980370_32980640_32980763_32981348_32981414_32982124_32982210_32983436_32983589_32985033_32985153_32985542_32985701_32985913_32986025_32987831_32987912_32992271_32992380_32994078_32994175_32994551_32994704_32995978
83515	chrM	-	1591	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24826	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	9983	False	NA	-3	True	NA	NA	NA	2684	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_2700
83516	chr11	-	1345	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	5743	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
83517	chrX	-	1105	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	49	3	-28	-3	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	11034	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537580	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
83518	chr7	+	1536	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	449	4	3	-4	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	1097	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCTTGGTGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	140462329	140478551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
83519	chrM	+	2184	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1224	-3	-1224	3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	30	False	NA	10	True	NA	NA	NA	1526	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3700
83520	chr7	-	619	1	Antisense	novelGene_ENSMUSG00000066543.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGAATTCTTGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	35818281	35817662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_35817700_35818300
83521	chr19	-	3659	10	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-53	1289	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1050.93458700951	136	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAATACTATAGAGCCTG	NA	False	NA	NA	False	NA	NA	NA	15902347	15880752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15881909_15882079_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83522	chrM	+	1572	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	10	0	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	327186	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGGTTATTAGGGTGG	-3	True	NA	22	True	NA	NA	NA	1093	2665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2700
83523	chr19	+	2267	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	70	17	9	-17	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	11946	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAATAAAACTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	5540552	5545212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
83524	chr2	-	1035	2	NNC	ENSMUSG00000081999.4	novel	662	2	NA	NA	-37	347	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1406	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	41878878	41877137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_41878015_41878720
83525	chr11	+	684	6	NNC	ENSMUSG00000063316.14	novel	614	5	NA	NA	-29	1877	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4561.44351713358	47541	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAATAAATAAATAAAT	2352	False	NA	NA	False	NA	NA	NA	101333234	101338232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264_101336339_101338034
83526	chr4	+	1303	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	49	7	15	-7	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	27	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTATGGTGGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	108691846	108719317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
83527	chr15	-	1556	5	NNC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-17	926	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.820535611075	162258	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTGCTTTCTATTCAC	NA	False	NA	NA	False	NA	NA	NA	97065142	97057887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97058298_97058467_97059277_97059835_97059964_97064383_97064508_97065057
83528	chr6	-	3872	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-560	1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_9	2884.6558046171	246	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	9687	False	NA	NA	False	NA	NA	NA	122720439	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122720140
83529	chr5	-	1206	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	37	-3	-5	3	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	399338	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTATTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	117425653	117420715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
83530	chr6	-	3872	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-560	1	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_9	2884.6558046171	1835	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	9687	False	NA	NA	False	NA	NA	NA	122720439	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122720140
83531	chrM	-	3913	1	FSM	ENSMUSG00000064343.1	ENSMUST00000082394.1	71	1	-1108	-2734	-1108	2734	mono-exon	FALSE	NA	NA	NA	NA	NA	21136	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTACACTATGATTATTC	9980	False	NA	67	True	NA	NA	NA	4950	1037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_1000_5000
83532	chr1	+	1565	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-367	18	-367	-18	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	2945	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAATGGTGTCTCAAAGC	NA	False	NA	NA	False	NA	NA	NA	86454080	86458416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83533	chr2	-	1113	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	37	11	-32	-11	multi-exon	FALSE	canonical	3	3295	junction_4	264.518850409989	15098	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAGTTGATATATTCAT	NA	False	NA	NA	False	NA	NA	NA	130021286	130013565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
83534	chr4	+	3736	7	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	32	1177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	78.8467219074804	33	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAATTATGTCCATCCGC	NA	False	NA	NA	False	NA	NA	NA	147216526	147266213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147216647_147219028_147219122_147249797_147249844_147260303_147260362_147261203_147261331_147262781_147264324_147264463
83535	chrX	+	1668	6	FSM	ENSMUSG00000016308.13	ENSMUST00000016452.11	1732	6	64	0	1	0	multi-exon	FALSE	canonical	3	837	junction_1	46.7435557055729	2147	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTTCACACTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	36138011	36147875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36138183_36138363_36138445_36138819_36138846_36145309_36145400_36146251_36146341_36146664
83536	chr11	+	852	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	-116	15	98	-15	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	162	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97917633	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
83537	chr11	-	539	4	FSM	ENSMUSG00000006057.16	ENSMUST00000178611.8	4660	4	2	4119	2	1	multi-exon	FALSE	canonical	3	9053	junction_3	812.300437030536	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGCCTGTCT	4114	False	NA	NA	False	NA	NA	NA	95965861	95963811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812
83538	chr11	+	1907	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-41248	-268	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3901.83149302991	92388	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATCATGCCTCCATCCT	5314	False	NA	NA	False	NA	NA	NA	75582446	75656403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75582569_75623741_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
83539	chr1	-	1483	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	55	560	-15	-560	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	33775	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGATGAGTTCTGCAA	7351	False	NA	NA	False	NA	NA	NA	160040390	160030496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
83540	chr8	-	1121	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	254	550	0	-550	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	25077	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAAATGCTTCATTGAG	NA	False	NA	NA	False	NA	NA	NA	46664067	46660383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
83541	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	133287	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83542	chr11	-	724	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	204	2253	-45	240	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	10981	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTATTGCTGTACAGCT	589	False	NA	NA	False	NA	NA	NA	93859143	93850057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
83543	chr4	-	2167	19	NNC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	-65917	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	171.733931445933	63051	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	6599	False	NA	NA	False	NA	NA	NA	34680861	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607214_34680835
83544	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	67	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
83545	chr6	-	2954	13	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-35162	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2383.48313486097	241	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	NA	False	NA	NA	False	NA	NA	NA	7728416	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108_7693918_7728126
83546	chr15	+	2794	4	Intergenic	novelGene_3311	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5530	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCAAGCAGCTAGGAGT	NA	False	NA	NA	False	NA	NA	NA	75739565	75754364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_75741954_75743123_75743213_75744220_75744419_75754245
83547	chr9	+	2027	2	Genic_Genomic	ENSMUSG00000097946.2_ENSMUSG00000059252.6	novel	994	1	NA	NA	-76	210	multi-exon	FALSE	non_canonical	0	0	junction_1	0	335655	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCCCCCAAAAAAAATTGG	NA	False	NA	NA	False	NA	NA	NA	37597160	37608536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_37598353_37607701
83548	chr10	+	2140	12	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	83	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	301.927170902066	38	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7073	False	NA	NA	False	NA	NA	NA	60113532	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128348_60130834_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83549	chr12	+	4018	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	98	-1	4	1	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	107228	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAACTGTGTAGGTT	9263	False	NA	NA	False	NA	NA	NA	100165791	100176074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
83550	chr14	+	814	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	238	117	0	1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	150777	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
83551	chr11	+	1192	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	101	29	101	-29	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	309	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTAAATAAAGCTTGTT	4058	False	NA	NA	False	NA	NA	NA	100210811	100212893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
83552	chr9	+	884	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-22	-64	-22	64	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACACATCCTTGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	84306014	84306898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
83553	chr3	+	2211	13	FSM	ENSMUSG00000001416.14	ENSMUST00000168062.8	1943	13	-8	-260	6	0	multi-exon	FALSE	canonical	3	2266	junction_3	126.158630303281	12236	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3868	False	NA	NA	False	NA	NA	NA	88204486	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
83554	chrX	-	839	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	27	0	-2	0	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	440	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	NA	False	NA	NA	NA	135116235	135114720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135115333_135115652_135115730_135116085
83555	chr7	+	797	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	11	-36	11	0	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	658	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	2820	False	NA	NA	False	NA	NA	NA	4795999	4797561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
83556	chr1	+	1201	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	15	0	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	644277	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454447	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83557	chr19	-	2657	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	73	-113	-56	113	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	21987	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAACAAAAAAACAAG	NA	False	NA	NA	False	NA	NA	NA	15902350	15881928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83558	chr8	-	1132	4	Antisense	novelGene_ENSMUSG00000110679.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	530	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGCTTAGAGGACAGCCTG	NA	False	NA	NA	False	NA	NA	NA	94950335	94905868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_94905966_94906449_94906517_94906729_94906940_94949577
83559	chr12	-	1426	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	45	1	-10	-1	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	102278	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	111638727	111635795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
83560	chr7	+	990	2	Genic_Genomic	ENSMUSG00000056777.6_ENSMUSG00000109905.2	novel	466	1	NA	NA	-38	56	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63675	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCATGCCCACAGTGA	NA	False	NA	NA	False	NA	NA	NA	139299276	139355151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_139299701_139354585
83561	chr19	-	2664	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	73	-120	-56	120	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	59	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAACAAGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	15902350	15881921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83562	chr12	+	4018	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	98	-1	4	1	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	109965	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAACTGTGTAGGTT	9263	False	NA	NA	False	NA	NA	NA	100165791	100176074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
83563	chr9	+	1496	2	Genic_Genomic	ENSMUSG00000098915.2_ENSMUSG00000099253.2	novel	805	1	NA	NA	-37	58	multi-exon	FALSE	non_canonical	0	0	junction_1	0	343	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAAATACTGTTGCTGCAT	NA	False	NA	NA	False	NA	NA	NA	71968181	72036731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_71968793_72035846
83564	chr8	-	1147	5	Antisense	novelGene_ENSMUSG00000054717.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCTCGCTAACGCAATC	NA	False	NA	NA	False	NA	NA	NA	57967523	57964971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_57965036_57965544_57965781_57966093_57966242_57966323_57966497_57966997
83565	chrX	+	1938	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	6	300	6	36	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	4996	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTTTGTTTTGTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	161543403	161561788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
83566	SIRV3	-	1532	9	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	610.600319357925	17	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_6056_6334_7270_7370_7872_7989_8124_8208_8755_8976_9189_9299_9434
83567	chrX	+	11858	9	Intergenic	novelGene_3908	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1167	380	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCGTTTCTCGTTG	NA	False	NA	NA	False	NA	NA	NA	34409350	34780435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34413617_34413704_34414431_34427071_34427359_34588347_34588523_34588630_34588844_34589150_34589571_34591793_34592261_34740537_34745808_34780401
83568	chrX	+	1390	5	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	-1596	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5140.90018260421	1226	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCAGTTTTGTTCGTTGTT	NA	False	NA	NA	False	NA	NA	NA	36057707	36062455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36057870_36059310_36059495_36060495_36060983_36061388_36061530_36062039
83569	chrM	-	956	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35963	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGGGAGAGGATTTGAA	-3	True	NA	3	True	NA	NA	NA	3706	2750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2800_3700
83570	chr5	+	1533	8	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	884	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6000.71136259218	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTTTTTTTTTAAATCT	NA	False	NA	NA	False	NA	NA	NA	121342596	121348188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844_121346973_121347540
83571	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	887	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
83572	chr11	+	2463	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	198	-1339	-126	1339	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	1729	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAATAAAAAG	4155	False	NA	NA	False	NA	NA	NA	100210908	100214261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
83573	chrM	+	970	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-185	-1	-185	1	mono-exon	FALSE	NA	NA	NA	NA	NA	247	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	645	False	NA	NA	False	NA	NA	NA	8421	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_8400_9400
83574	chr5	+	1618	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	117	532	-13	-532	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	2328	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45650832	45669501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
83575	chrM	+	2602	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	15	-1035	15	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	3152	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	12	False	NA	37	True	NA	NA	NA	1108	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
83576	chr18	+	2064	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	4	21046	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	195	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGATCACGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	48179717	48202525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48181229_48201972
83577	ERCC-00096	+	646	1	FSM	ERCC-00096A	DQ459429	1091	1	0	445	0	-445	mono-exon	FALSE	NA	NA	NA	NA	NA	15089	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACACTATCTTGGATATGA	NA	False	NA	NA	False	NA	NA	NA	0	646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00096_+_0_600
83578	chr6	+	877	1	FSM	ENSMUSG00000081669.2	ENSMUST00000119728.2	528	1	-19	-330	-19	330	mono-exon	FALSE	NA	NA	NA	NA	NA	76	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85053154	85054031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85053200_85054000
83579	chr4	+	891	5	NNC	ENSMUSG00000065990.13	novel	1159	4	NA	NA	-2370	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	992.591400073565	395	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	155913358	155917521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155913477_155916127_155916193_155916439_155916528_155916808_155917255_155917347
83580	chr15	+	967	7	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	1089	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4309.86846924848	1729	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAGTTATTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	76788284	76791603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790499_76791464
83581	chr1	+	1005	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-15466	122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8590.17096453848	37	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAACTTTTGTGTATGTA	4351	False	NA	NA	False	NA	NA	NA	86438981	86458215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86438990_86454447_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83582	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	484	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
83583	chr9	+	865	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	21	6	21	-6	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATAGCTTGGGTGTGGG	1595	False	NA	NA	False	NA	NA	NA	65967533	65973899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
83584	chr18	-	2228	19	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCCACAGCGCTCTCCA	NA	False	NA	NA	False	NA	NA	NA	32996080	32970470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970624_32974085_32974195_32974947_32975066_32976812_32976948_32978643_32978696_32979879_32980014_32980192_32980370_32980640_32980763_32981348_32981414_32982124_32982210_32983436_32983589_32985033_32985153_32985542_32985701_32985913_32986025_32987831_32987912_32992271_32992380_32994078_32994175_32994551_32994704_32995978
83585	chr17	-	661	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	-52	-168	-52	168	mono-exon	FALSE	NA	NA	NA	NA	NA	540	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCATCCTGGGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	5866967	5866306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_5866300_5867000
83586	chr1	+	1206	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-5	15	-5	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	2168	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454442	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83587	chr15	+	2590	17	NIC	ENSMUSG00000022477.14	novel	2918	18	NA	NA	0	-20	combination_of_known_splicesites	FALSE	canonical	2	39	junction_15	470.793607745209	4462	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGATCCATATCTATTAA	NA	False	NA	NA	False	NA	NA	NA	81756684	81799314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81798438_81798561_81798828
83588	chr2	+	1854	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	7	0	-1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	70081	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	NA	False	NA	NA	NA	130116365	130121226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
83589	chr14	+	814	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	238	117	0	1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
83590	chr2	+	1556	15	ISM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	4499	8	4499	-8	3prime_fragment	FALSE	canonical	3	2559	junction_4	228.633395618043	125	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31364717	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
83591	chrM	+	3458	2	Genic_Genomic	ENSMUSG00000064359.1_ENSMUSG00000064354.1_ENSMUSG00000064357.1_ENSMUSG00000064351.1_ENSMUSG00000064353.1	novel	684	1	NA	NA	459	-67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7278	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	9	True	NA	97	True	NA	NA	NA	5786	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8800_8946
83592	chr6	-	2034	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	38	13	-15	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	426397	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294550	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83593	chr10	+	623	1	Antisense	novelGene_ENSMUSG00000069682.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	178	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCGAAAAGCGATTTTT	NA	False	NA	NA	False	NA	NA	NA	29574740	29575363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_29574700_29575400
83594	chr19	+	1288	5	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	9	-17	intron_retention	FALSE	non_canonical	0	0	junction_4	2714.10412244998	274150	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAATAAAACTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	5540552	5545212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5544051_5545029
83595	chr11	+	1192	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	101	29	101	-29	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	210	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTAAATAAAGCTTGTT	4058	False	NA	NA	False	NA	NA	NA	100210811	100212893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
83596	chr13	-	861	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	26	1	-13	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	173	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTATCATTTTACT	NA	False	NA	NA	False	NA	NA	NA	98453488	98446405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
83597	chr19	-	730	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	529	2	-33	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	1429	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8710	False	NA	NA	False	NA	NA	NA	5416667	5414667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5415187_5415845_5415985_5416595
83598	chr11	-	587	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	-5	14	-5	-14	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	661	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAACGTTTCTCTAAACC	3525	False	NA	NA	False	NA	NA	NA	95966450	95963829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
83599	chr19	+	2300	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	70	-16	9	16	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	93	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCCGAGGGCTTATGTG	NA	False	NA	NA	False	NA	NA	NA	5540552	5545245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
83600	chr6	-	1801	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	5	907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	11	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGCCGGAGCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	87828057	87818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
83601	chr7	+	1431	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	-190	3	-190	-3	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	4758	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTGAAGTGTTCATG	1117	False	NA	NA	False	NA	NA	NA	133310871	133322871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
83602	chr6	-	1793	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	-7	907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	2583	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGCCGGAGCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	87828049	87818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
83603	chr6	-	1696	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	52	907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	541	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGCCGGAGCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	87827952	87818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
83604	chrM	+	1479	2	Genic_Genomic	ENSMUSG00000064357.1_ENSMUSG00000064359.1	novel	681	1	NA	NA	-161	-67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	271994	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-11	True	NA	NA	False	NA	NA	NA	7765	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8800_8946
83605	chr4	-	2198	20	NNC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	-1	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_17	165.862339877001	44291	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	3	True	NA	NA	False	NA	NA	NA	34614905	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605625_34607130_34607229_34611021_34611077_34614864
83606	chr11	+	1161	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	5	-172	-5	multi-exon	FALSE	canonical	3	35417	junction_1	0	292015	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATATATGGTGTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
83607	chr10	+	1237	10	FSM	ENSMUSG00000035351.17	ENSMUST00000052355.15	1267	10	26	4	-9	-2	multi-exon	FALSE	canonical	3	484	junction_1	64.7921653547559	1259	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATATGTTCCTATTG	NA	False	NA	NA	False	NA	NA	NA	87982879	88014248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
83608	chr7	+	701	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	5	0	-2	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTTATTGGTGTGCCT	1309	False	NA	NA	False	NA	NA	NA	3707036	3709891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
83609	chr2	+	2342	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	61	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCACTAGGCTCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	154713394	154734720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102_154730283_154734611
83610	chr10	+	898	8	NNC	ENSMUSG00000061315.15	novel	885	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	4018.5497688716	105	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4968	False	NA	NA	False	NA	NA	NA	127871499	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127871553_127872288_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83611	chr18	-	2360	16	Fusion	ENSMUSG00000118375.2_ENSMUSG00000024587.11	novel	2745	15	NA	NA	1	32	multi-exon	FALSE	non_canonical	0	0	junction_1	1327.22389302718	20006	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACACACACACAAAGAATAAG	NA	False	NA	NA	False	NA	NA	NA	64649585	64561391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_-_64561711_64633283_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
83612	chr7	-	919	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	45	4	0	-3	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	8006	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCTGGTGTTTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	45109263	45107371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
83613	SIRV5	+	2584	17	NIC	SIRV5A	novel	2029	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	1024	junction_16	2662.85700658147	192	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	1000	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858_10992_11311
83614	chr12	-	750	2	Genic_Genomic	ENSMUSG00000059033.8	novel	523	1	NA	NA	-3	333	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACTTGCTCTTCCAGAG	NA	False	NA	NA	False	NA	NA	NA	55443017	55442158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_55442347_55442455
83615	chr12	-	2131	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	72	-1249	-3	1249	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	64	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGCTTCATCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	28685880	28679603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
83616	chr2	+	1598	15	NIC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	95	129	combination_of_known_splicesites	FALSE	canonical	3	195	junction_12	721.33651817233	71575	25	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTATATATGTTATATATA	NA	False	NA	NA	False	NA	NA	NA	31360313	31410813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31404690_31404848_31408737_31408804_31410383
83617	chr15	+	1815	11	Antisense	novelGene_ENSMUSG00000002524.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1262	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGCTCCCTCCGCAGTCT	988	False	NA	NA	False	NA	NA	NA	75942045	75952758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_75942479_75942599_75942830_75943024_75943166_75943313_75943506_75943588_75943801_75944079_75944174_75944254_75944424_75947396_75947480_75947584_75947687_75949452_75949552_75952698
83618	chr1	-	1574	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	783	1	NA	NA	-161	2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	119	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24652757_24652808
83619	chr6	-	2034	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	38	13	-15	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	60	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294550	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83620	chr1	-	673	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	0	424	0	-424	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	1419	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTAAAGCTCCTGCCTG	4956	False	NA	NA	False	NA	NA	NA	167221410	167199958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
83621	chr4	+	3385	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	79	-2329	79	2329	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	987	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTTAAGAATTTGATACA	NA	False	NA	NA	False	NA	NA	NA	63463087	63471316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
83622	chr19	+	864	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	58	7	0	-1	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	1984	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTCTTTTCTTTGTGAT	4927	False	NA	NA	False	NA	NA	NA	9960067	9962455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
83623	chr2	+	1271	3	Genic_Genomic	ENSMUSG00000081572.4_ENSMUSG00000084015.2	novel	745	1	NA	NA	-23	24	multi-exon	FALSE	canonical	0	0	junction_1	0	101	31	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGGGAACCTTCCCAATA	9834	False	NA	NA	False	NA	NA	NA	119017974	119115537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_119018825_119095959_119096065_119115221
83624	chr3	+	2155	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	-1099	3	-1099	-3	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	106249	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	2458	False	NA	NA	False	NA	NA	NA	88485815	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
83625	chr12	+	1524	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2499	-2	820	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	162	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9257	False	NA	NA	False	NA	NA	NA	100165785	100173574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
83626	chrM	+	2362	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	15	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4810	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	12	False	NA	37	True	NA	NA	NA	1108	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2950_3189
83627	chr17	-	643	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	-34	-168	-34	168	mono-exon	FALSE	NA	NA	NA	NA	NA	610	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCATCCTGGGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	5866949	5866306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_5866300_5866900
83628	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
83629	chr9	-	4278	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	167	-2621	3	2621	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	38941	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTGTTAGGTAAAAGGTT	NA	False	NA	NA	False	NA	NA	NA	89996660	89971096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
83630	chr2	-	878	6	FSM	ENSMUSG00000051730.16	ENSMUST00000142127.8	851	6	-24	-3	-6	3	multi-exon	FALSE	canonical	3	48	junction_3	209.013492387453	312	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGTCTCTAGCACCAT	6800	False	NA	NA	False	NA	NA	NA	69715965	69701554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69711110_69711293_69711640_69711756_69715592
83631	chrM	+	1154	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	459	-68	459	68	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	9	True	NA	97	True	NA	NA	NA	5786	6940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
83632	chr1	+	1202	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	14	0	-14	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	50574	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTGTCTCAAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	86454447	86458420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83633	chr2	-	1754	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	39	2	-32	-2	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	24	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
83634	chrX	+	1016	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	162	0	162	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	39946	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	NA	False	NA	NA	NA	138234593	138238918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
83635	chr1	-	2047	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	260	-1144	0	1144	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	67549	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCTGTCAAAGAGTGC	NA	False	NA	NA	False	NA	NA	NA	16174626	16170374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
83636	chr8	+	680	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	65	0	-21	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	6189	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	121395025	121400946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
83637	chr4	-	990	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	6	4	-3	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	14758	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	117744520	117741526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
83638	chr19	-	1524	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	62	233	62	-233	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	5628	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTAAACTTTTGCTTAGTA	NA	False	NA	NA	False	NA	NA	NA	8691181	8685213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
83639	chr6	+	1959	1	FSM	ENSMUSG00000107432.2	ENSMUST00000204113.2	523	1	-1204	-232	-1204	232	mono-exon	FALSE	NA	NA	NA	NA	NA	11	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGAAAGGGCCTTCAAAAA	NA	False	NA	NA	False	NA	NA	NA	88858432	88860391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_88858400_88860400
83640	chr10	-	1951	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	35	2438	-4	1	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	5642	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGATACATTTTAATGTGT	NA	False	NA	NA	False	NA	NA	NA	93725641	93696788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
83641	chr8	+	1682	1	FSM	ENSMUSG00000071041.5	ENSMUST00000120826.2	1545	1	-65	-72	-65	72	mono-exon	FALSE	NA	NA	NA	NA	NA	27327	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTTTAGTGCTAATGGA	NA	False	NA	NA	False	NA	NA	NA	100757124	100758806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_100757100_100758800
83642	chr5	-	491	4	FSM	ENSMUSG00000038690.16	ENSMUST00000161741.8	955	4	456	8	-14	0	multi-exon	FALSE	canonical	3	4948	junction_3	568.415341101909	24	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	9955	False	NA	NA	False	NA	NA	NA	145128416	145120515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145128312
83643	chr17	-	1146	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10306	-15141	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	318	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACAAAAAAAAGGCACTG	10004	False	NA	NA	False	NA	NA	NA	6744727	6723941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
83644	chr16	+	2089	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1783	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGTTTTTTTTAAATA	NA	False	NA	NA	False	NA	NA	NA	45973351	45975440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45973400_45975400
83645	chr10	+	2498	15	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	87	8369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	272.669980686079	3502	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCACAACGCGCACCTCC	7077	False	NA	NA	False	NA	NA	NA	60113536	60146745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472_60138298_60146729
83646	chr11	-	724	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	204	2253	-45	240	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	123	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTATTGCTGTACAGCT	589	False	NA	NA	False	NA	NA	NA	93859143	93850057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
83647	chr5	-	1370	4	Fusion	ENSMUSG00000025537.13_ENSMUSG00000057244.7	novel	2374	10	NA	NA	6478	41	multi-exon	FALSE	non_canonical	0	0	junction_1	0	379957	32	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAATTACAG	NA	False	NA	NA	False	NA	NA	NA	129892450	129700012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_129700979_129782540_129782704_129839903_129839960_129892265
83648	chr10	+	856	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	43	5	0	-5	multi-exon	FALSE	canonical	3	514	junction_6	43.3628104870214	1937	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATTCTGTGTTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	120044697	120060817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
83649	chr2	-	2332	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	81	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3767	False	NA	NA	False	NA	NA	NA	154734720	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83650	chr19	+	1411	5	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	-53	-17	intron_retention	FALSE	non_canonical	0	0	junction_4	2714.10412244998	148	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAATAAATAAAACTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	5540429	5545212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5544051_5545029
83651	chr17	-	1473	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	34	-218	-31	215	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	1704	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAGGCATGCACCAG	NA	False	NA	NA	False	NA	NA	NA	46985244	46978168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
83652	chr7	+	1425	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	51	-318	-1	318	multi-exon	FALSE	canonical	3	7451	junction_1	3855.66202972978	2455	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGCATTGTTATTTCCT	NA	False	NA	NA	False	NA	NA	NA	109118404	109121892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
83653	chr8	+	1039	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	79	1510	12	1280	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	10329	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57965019	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
83654	chrM	+	2195	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	-40	-1011	-40	1011	mono-exon	FALSE	NA	NA	NA	NA	NA	271	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		243	False	NA	47	True	NA	NA	NA	14104	16299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_16300
83655	chr12	-	2131	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	72	-1249	-3	1249	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	2415	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGCTTCATCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	28685880	28679603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
83656	chr12	-	6512	11	NNC	ENSMUSG00000021131.15	novel	506	5	NA	NA	-38970	1311	intron_retention	FALSE	non_canonical	0	0	junction_1	3978.06960220658	107	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAAAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	80730085	80679484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_80679651_80680814_80681302_80684263_80684385_80687730_80687819_80690537_80691749_80709241_80709352_80713307_80713509_80719998_80720067_80722620_80722707_80723903_80724039_80726246
83657	chr1	+	1199	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	17	0	-17	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	13802	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	86454447	86458417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83658	chr10	+	2545	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	105	-4	104	1	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	5111	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7094	False	NA	NA	False	NA	NA	NA	60113553	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83659	chrX	-	1234	4	Antisense	novelGene_ENSMUSG00000016319.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGCGGAGCAAAGCAAATG	NA	False	NA	NA	False	NA	NA	NA	36062457	36059306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36059492_36060492_36060982_36061387_36061530_36062039
83660	chr11	+	1426	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	-22	-88	-22	88	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	132	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCAAGTTTGCCAAGCC	4514	False	NA	NA	False	NA	NA	NA	106146957	106154034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
83661	chr18	-	2724	16	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	-50682	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	1327.22389302718	69974	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64700405	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486_64649550_64700244
83662	chr2	+	1947	2	Genic_Genomic	ENSMUSG00000081416.2	novel	386	1	NA	NA	-4053	503	multi-exon	FALSE	non_canonical	0	0	junction_1	0	420	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAAAAAAAAAAGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	119495586	119500528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_119496653_119499647
83663	chr14	+	2658	19	NNC	ENSMUSG00000022064.11	novel	2797	18	NA	NA	-7	28094	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_18	37.3384999731767	370	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTTAAAAAAAGAATTT	NA	False	NA	NA	False	NA	NA	NA	99337335	99520023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99487124_99487284_99519995
83664	chr3	-	1034	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	-71	-78	71	mono-exon	FALSE	NA	NA	NA	NA	NA	6322	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	149779257	149778223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778200_149779300
83665	chr16	+	1673	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-32	-672	-32	672	mono-exon	FALSE	NA	NA	NA	NA	NA	632	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTACCAACTAGCTAATAAA	NA	False	NA	NA	False	NA	NA	NA	24348111	24349784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24349800
83666	chr9	+	910	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	67	0	67	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	21572	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78099295	78116631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
83667	chr2	-	1398	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	2	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	1550	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3738	False	NA	NA	False	NA	NA	NA	154734749	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83668	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	499	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
83669	chr3	+	882	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	85	-2	19	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	29	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAATCGGGACTTACCT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
83670	chr17	-	2455	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	35232	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149124	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145561_36145680_36146932_36147054_36147166_36147519_36147629_36148888
83671	chr2	+	8867	12	NNC	ENSMUSG00000094786.2	novel	774	2	NA	NA	-203766	73948	intron_retention	FALSE	non_canonical	0	0	junction_1	80.1808905326673	2194	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGGGCTTGGTACCAGGA	NA	False	NA	NA	False	NA	NA	NA	176986241	177275504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176986332_177193535_177193591_177198701_177198829_177199035_177199041_177200324_177202789_177243354_177243543_177257561_177261737_177261911_177263286_177263477_177263607_177266761_177266817_177271203_177271392_177275487
83672	chr4	+	711	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	-27	-48	-27	48	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATACATTTCAGGCA	-7	True	NA	NA	False	NA	NA	NA	10848392	10849103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_10848400_10849100
83673	chr6	+	1120	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-544	-111	544	mono-exon	FALSE	NA	NA	NA	NA	NA	7037	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37782909	37784029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
83674	chr9	-	835	2	Antisense	novelGene_ENSMUSG00000106234.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	135	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTTTCAGGAAATGAAGG	NA	False	NA	NA	False	NA	NA	NA	110808649	110798435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_110799208_110808586
83675	chr17	-	2382	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	6	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCGCCCCAGAGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	36149124	36144852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145520_36145672_36146932_36147054_36147166_36147519_36147629_36148888
83676	chr4	-	3730	4	NNC	ENSMUSG00000028639.15	novel	1054	5	NA	NA	278	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5050.5652708935	138	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTAAATTCGAGGCCAGC	NA	False	NA	NA	False	NA	NA	NA	119139711	119134637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119137915_119138199_119138850_119139342
83677	chr11	-	1058	2	Genic_Genomic	ENSMUSG00000081675.2	novel	801	1	NA	NA	-23732	66	multi-exon	FALSE	non_canonical	0	0	junction_1	0	153649	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGAAAATCCCTTCT	2078	False	NA	NA	False	NA	NA	NA	72487888	72463289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_72464121_72487661
83678	chrX	+	2420	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	138	4	-42	-4	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	11030	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
83679	chr3	+	1614	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	11	-13	-1	13	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	3144	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTCTGTGTTATTTCTT	8501	False	NA	NA	False	NA	NA	NA	94350642	94356028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
83680	chr6	-	1747	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	-36	464	-36	3	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	544	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828124	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
83681	chr2	-	2409	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-5	5866	intron_retention	FALSE	non_canonical	0	0	junction_1	4169.46393510879	2614	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTAGGTGTTTCTTGTTTTT	3767	False	NA	NA	False	NA	NA	NA	154734720	154707463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154707482_154713345_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83682	chr11	-	1218	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108609.8	849	6	-58	-311	-37	0	multi-exon	FALSE	canonical	3	1864	junction_5	7741.45703081791	4146	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6535	False	NA	NA	False	NA	NA	NA	69811948	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811849
83683	chr1	+	1199	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	17	0	-17	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	31326	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	86454447	86458417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
83684	chr9	+	738	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-38	-210	-38	210	mono-exon	FALSE	NA	NA	NA	NA	NA	45825	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAGCA	NA	False	NA	NA	False	NA	NA	NA	96777672	96778410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83685	chr16	+	1163	1	FSM	ENSMUSG00000116721.2	ENSMUST00000231573.2	323	1	-53	-787	-53	787	mono-exon	FALSE	NA	NA	NA	NA	NA	36479	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTGTTTTCAGAAAAAAAAA	9082	False	NA	NA	False	NA	NA	NA	20639077	20640240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20639100_20640200
83686	chr7	+	1136	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	-4	-407	at_least_one_novel_splicesite	FALSE	canonical	3	234	junction_3	1056.66335225558	83	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	137039389	137069916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055236_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
83687	chr17	-	1140	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	46	-3	46	3	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	721	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTGTTCTGGCGCTTC	NA	False	NA	NA	False	NA	NA	NA	24388389	24382836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
83688	chr5	-	1435	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	68	1478	-2	90	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	13233	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCGAGTCCTTGCCTGG	NA	False	NA	NA	False	NA	NA	NA	35263042	35250322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
83689	chr10	+	2423	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	59	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	282.238956209746	808	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7049	False	NA	NA	False	NA	NA	NA	60113508	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129222_60130446_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83690	chr19	-	736	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	523	2	-39	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	25570	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8704	False	NA	NA	False	NA	NA	NA	5416673	5414667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5415187_5415845_5415985_5416595
83691	chr7	+	1764	9	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3579.81354044802	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495269	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46495687_46495871_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
83692	chrM	+	1557	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	15	10	15	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGGTTATTAGGGTGG	12	False	NA	37	True	NA	NA	NA	1108	2665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2700
83693	chr10	+	1250	10	FSM	ENSMUSG00000035351.17	ENSMUST00000052355.15	1267	10	22	-5	-13	5	multi-exon	FALSE	canonical	3	484	junction_1	64.7921653547559	5	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTATTGTGTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	87982875	88014257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
83694	chr11	+	9613	25	NNC	ENSMUSG00000085208.4	novel	2604	7	NA	NA	0	45292	intron_retention	FALSE	non_canonical	0	0	junction_2	4.79583152331272	330	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTACTGACATCTGGAAG	NA	False	NA	NA	False	NA	NA	NA	86092208	86147310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_86092379_86097778_86103626_86103714_86103897_86105739_86105843_86105969_86106080_86106374_86106624_86108560_86108759_86112929_86113061_86115770_86115971_86117463_86117628_86120025_86120134_86122792_86122899_86123907_86124085_86125496_86125630_86127361_86127434_86129084_86129202_86129292_86129363_86133738_86133865_86135228_86135458_86139637_86139807_86140044_86140179_86141793_86141908_86143083_86143184_86146168_86146314_86146851
83695	chr12	-	1136	2	Genic_Genomic	ENSMUSG00000113431.2	novel	390	1	NA	NA	-561	453	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5104	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTGCATCTGTAGTCATT	87	False	NA	NA	False	NA	NA	NA	83668404	83667000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_83667942_83668209
83696	chr2	-	1398	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	2	-1036	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4360.48423343096	470	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTATTATAACAGTAAT	3738	False	NA	NA	False	NA	NA	NA	154734749	154714373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719746_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83697	chr10	-	1250	10	Intergenic	novelGene_3504	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2495	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGCTCTGCTTCCGGGTC	NA	False	NA	NA	False	NA	NA	NA	88014257	87982875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_87982933_87984021_87984240_87989383_87989511_87994719_87994791_87996735_87996831_88007854_88007946_88010245_88010428_88010742_88010792_88012930_88013026_88013992
83698	chr5	+	2062	10	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	1034.83093388649	130	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	280	False	NA	NA	False	NA	NA	NA	77099147	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099190_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
83699	chr2	-	2130	10	Fusion	ENSMUSG00000074656.13_ENSMUSG00000098640.3	novel	2542	9	NA	NA	-37	43	multi-exon	FALSE	non_canonical	0	0	junction_1	4169.46393510879	6814	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAAAGAAAAAAG	3699	False	NA	NA	False	NA	NA	NA	154734788	154611131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_154611816_154714358_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83700	chr4	-	611	5	ISM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	23	537	23	8	5prime_fragment	FALSE	canonical	3	8358	junction_4	1998.07512058481	22	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGAAAAAGAATGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	117013417	117011560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
83701	chr17	+	1042	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	-17	-3	0	-1	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	15234	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
83702	chr5	+	850	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	35	14	-9	-14	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	1941	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGAAAAAGCTTACACACA	4523	False	NA	NA	False	NA	NA	NA	122529975	122544228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
83703	chr5	-	1276	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	615	0	-229	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	3450	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAGAGACAACATTGGC	8918	False	NA	NA	False	NA	NA	NA	142892480	142889484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
83704	chr2	+	2047	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	170	junction_12	786.810487382798	40934	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTATGTGTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	130116331	130121227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
83705	chr11	-	832	3	NNC	ENSMUSG00000020738.17	novel	1000	4	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2054.5	1613	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427043	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115414525_115425394_115425510_115426923
83706	chr17	+	2894	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	-1939	181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	732.756136484407	679	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATAGGTACTGGATTTT	NA	False	NA	NA	False	NA	NA	NA	29249662	29262528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29249814_29251657_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
83707	chr14	+	731	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	54	1137	16	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	13043	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	NA	False	NA	NA	NA	4198682	4200736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
83708	chr17	-	1130	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	72	3	-7	-3	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	33426	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGTTGCTCTGAATCTG	NA	False	NA	NA	False	NA	NA	NA	87754291	87740842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
83709	chrX	+	809	3	NNC	ENSMUSG00000079428.9	novel	453	4	NA	NA	-807	-9931	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	42	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCGAGGGCAGGTCCGAG	NA	False	NA	NA	False	NA	NA	NA	135114720	135116205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_135115332_135115651_135115728_135116083
83710	chr15	-	1476	1	ISM	ENSMUSG00000023022.15	ENSMUST00000109024.9	4109	8	40198	0	4028	0	mono-exon	FALSE	NA	NA	NA	NA	NA	171	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	NA	False	NA	NA	False	NA	NA	NA	99677826	99676350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_99676400_99677800
83711	chr2	-	821	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	35	5	35	-5	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	9102	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACAGTTGTGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	35939383	35926342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
83712	chr11	+	1791	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	218	13	-57	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	3983	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5349	False	NA	NA	False	NA	NA	NA	52251904	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
83713	chrX	+	1220	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	20	0	17	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059323	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
83714	chr5	-	1734	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	1632.92395413871	226992	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	8921	False	NA	NA	False	NA	NA	NA	142892477	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889537_142889807_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
83715	chr3	+	1661	8	NIC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-111	-2	intron_retention	FALSE	canonical	3	133	junction_2	2263.70762336518	7857	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTTTGTCTTGCGTC	NA	False	NA	NA	False	NA	NA	NA	88483071	88495724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88483288_88483545_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
83716	chr5	-	6044	9	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	80	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCTGGAAAGATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	129105787	129097311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129097341_129097589_129097637_129097745_129097831_129097927_129098054_129099064_129099253_129099436_129099608_129099835_129103436_129103811_129105549_129105726
83717	chr8	+	810	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	28	1159	28	17	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	24310	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCCACAGCTGGGCC	NA	False	NA	NA	False	NA	NA	NA	27750384	27765543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_27750579_27763350_27763531_27765107
83718	chr11	-	1460	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	-50	223	-50	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	399	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113256	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
83719	chr16	+	2089	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10017	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGTTTTTTTTAAATA	NA	False	NA	NA	False	NA	NA	NA	45973351	45975440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45973400_45975400
83720	chr4	-	1088	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	21	14	-11	-14	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	26641	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6398	False	NA	NA	False	NA	NA	NA	129494420	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
83721	chrM	+	842	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	0	-161	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32250	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-11	True	NA	NA	False	NA	NA	NA	7765	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
83722	chr2	-	989	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	171	0	4	0	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	300	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2384	False	NA	NA	False	NA	NA	NA	38533928	38478047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
83723	chr17	+	1649	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	-109	1395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	39327	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGGAGGAGCCAAGCAGC	2927	False	NA	NA	False	NA	NA	NA	35816805	35823064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821659_35822875
83724	chr10	+	1232	8	Antisense	novelGene_ENSMUSG00000004667.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36419	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCTTTGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	79871800	79876500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_79872135_79872359_79872435_79872599_79872677_79872748_79872810_79873023_79873219_79874272_79874448_79875416_79875537_79876305
83725	chr17	+	1048	2	Genic_Genomic	ENSMUSG00000097803.2_ENSMUSG00000098438.2	novel	376	1	NA	NA	-24	22	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28274	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAATGAAACACTTAAA	NA	False	NA	NA	False	NA	NA	NA	85806036	85907322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_85806482_85906719
83726	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	6148	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_10819_11031_11109_11205
83727	chr8	-	1119	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	-6	-320	-6	320	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	183	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATATGAGTACACTGTTG	NA	False	NA	NA	False	NA	NA	NA	13940274	13934473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
83728	chr1	-	1593	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-808	-2	-808	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653860	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
83729	chr7	+	1779	8	FSM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	-12	-1	-12	0	multi-exon	FALSE	canonical	2	26	junction_1	2898.88755580904	78	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46496542	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46496813_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
83730	chr5	+	1040	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	179	1158	-24	-1158	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	3607	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTGAATCATCCCTTGC	521	False	NA	NA	False	NA	NA	NA	129097311	129100229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
83731	chr7	-	933	7	FSM	ENSMUSG00000030591.18	ENSMUST00000182328.8	1391	7	117	341	46	0	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	1511	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCCGAGTCTCCCCAGT	NA	False	NA	NA	False	NA	NA	NA	28879860	28873953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
83732	chr1	-	2912	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	-2	0	-2	0	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	3610	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287403	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
83733	chr10	-	1232	8	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-871	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1002.78752302097	23868	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATACTTTGATAAGTTACT	4644	False	NA	NA	False	NA	NA	NA	79876500	79871800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416_79875537_79876305
83734	chr8	-	1101	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-73	-74	-73	74	mono-exon	FALSE	NA	NA	NA	NA	NA	39	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592503	103591402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592500
83735	chr17	+	2436	5	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCAGAAGAGGCCGGCG	1666	False	NA	NA	False	NA	NA	NA	36144843	36149120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36145264_36145367_36146930_36147052_36147163_36147516_36147629_36148888
83736	chr3	-	1104	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	867	0	14	0	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	28508	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAGTTTCATACTCTG	NA	False	NA	NA	False	NA	NA	NA	105866548	105850013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
83737	chr10	+	2488	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	98	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	369.393714045504	1038	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7088	False	NA	NA	False	NA	NA	NA	60113547	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127498_60128284_60128354_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83738	chr7	-	1807	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	88	13	0	-5	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	56	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTTGATTAAACTCATGA	8423	False	NA	NA	False	NA	NA	NA	99132857	99127115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
83739	chr19	+	1118	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	66	1170	5	2	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	467	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540548	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
83740	chr10	+	1347	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	70	636	0	-13	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	167515	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGTCTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	126899472	126903153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
83741	chr15	-	1811	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	3	7	3	-7	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	4094	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGGCCCTGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	75952758	75942045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
83742	chrX	+	1490	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	25	80	7	-80	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	49	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGTGTAGTAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	74557929	74578468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
83743	chr6	-	2063	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	13	9	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	900958	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83744	chr8	+	2702	7	Fusion	ENSMUSG00000054717.8_ENSMUSG00000096917.3	novel	2628	5	NA	NA	2249	1280	multi-exon	FALSE	canonical	2	5	junction_2	3037.26825819226	6	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57943336	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_57943502_57959561_57959836_57963795_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
83745	chr8	+	3219	4	ISM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	664	-686	23	686	3prime_fragment	FALSE	canonical	3	6480	junction_3	312.16377467961	6726	115	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACAAAACAGTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	57965604	57969719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_57965783_57966095_57966242_57966323_57966499_57966999
83746	chr9	+	758	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-224	-44	224	mono-exon	FALSE	NA	NA	NA	NA	NA	185928	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83747	chr6	-	2034	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	38	13	-15	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	87	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294550	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83748	chr3	+	544	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	-24	-76	-24	76	mono-exon	FALSE	NA	NA	NA	NA	NA	1010	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATTTAGTACCTATTTA	NA	False	NA	NA	False	NA	NA	NA	24387207	24387751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_24387200_24387800
83749	chr7	+	1833	8	NIC	ENSMUSG00000063229.16	novel	934	7	NA	NA	-1	-26	combination_of_known_junctions	FALSE	canonical	2	17	junction_1	2902.00629403388	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGCCAAATAAAACCTTGA	NA	False	NA	NA	False	NA	NA	NA	46495519	46505024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46495871_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
83750	chr11	+	1820	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	0	-73	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	1509	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
83751	chr8	+	870	7	NNC	ENSMUSG00000000740.13	novel	780	6	NA	NA	-1016	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8476.39447065922	46392	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAAAGCTGGGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	123828072	123831975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_123828245_123829162_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
83752	chr12	-	3473	10	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	714	-335	-9	335	3prime_fragment	FALSE	canonical	3	11114	junction_7	1571.89128829643	5	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCACCATACAACTTTCCCA	NA	False	NA	NA	False	NA	NA	NA	110662115	110656703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952
83753	chr2	-	7333	11	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5484	71031	intron_retention	TRUE	non_canonical	0	0	junction_1	430.394284348666	613	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCAGGTCCATGTAGAG	NA	False	NA	NA	False	NA	NA	NA	177275487	177189965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177190110_177198700_177198826_177199032_177199095_177200244_177204255_177259262_177261349_177261430_177261788_177261871_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177275396
83754	chr10	+	2798	13	NIC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	85	1	intron_retention	FALSE	canonical	3	864	junction_5	84.5782018147834	30	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7075	False	NA	NA	False	NA	NA	NA	60113534	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83755	chr6	-	2017	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	55	13	2	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	70	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294533	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83756	chr17	-	1751	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	7	0	-7	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	69	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTTCCATAGTGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	15718560	15695289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
83757	chr5	-	3124	3	NNC	ENSMUSG00000029524.17	novel	599	2	NA	NA	-475	-3	intron_retention	FALSE	canonical	0	0	junction_1	17	86	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATAACAAATGTGTGGACT	NA	False	NA	NA	False	NA	NA	NA	115621390	115616074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115617276_115617369_115618585_115620682
83758	chrM	+	7990	3	Genic_Genomic	ENSMUSG00000064338.1_ENSMUSG00000064359.1_ENSMUSG00000064354.1_ENSMUSG00000064339.1_ENSMUSG00000064351.1_ENSMUSG00000064357.1	novel	1582	1	NA	NA	13	-67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	344	False	NA	-34	True	NA	NA	NA	1037	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_5558_5774_8800_8946
83759	chr14	+	1204	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-163	-705	-163	705	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669274	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
83760	chr17	-	2572	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	78	-1	-11	1	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	288	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGAGGCTGTGTGCTCA	NA	False	NA	NA	False	NA	NA	NA	36149120	36144811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
83761	chr11	+	1791	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	218	13	-57	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	473765	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5349	False	NA	NA	False	NA	NA	NA	52251904	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
83762	chr2	-	1090	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	74	2	8	-2	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	45048	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAGTCTCATTATTAATA	9578	False	NA	NA	False	NA	NA	NA	10085247	10060842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
83763	chr8	+	2702	7	Fusion	ENSMUSG00000054717.8_ENSMUSG00000096917.3	novel	2628	5	NA	NA	2249	1280	multi-exon	FALSE	canonical	2	5	junction_2	3037.26825819226	2748	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57943336	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_57943502_57959561_57959836_57963795_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
83764	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	44074	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
83765	chr3	-	1132	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	836	3	1	1	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	1092	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTATAAGTTTCATACT	NA	False	NA	NA	False	NA	NA	NA	105866579	105850016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
83766	chr11	-	2886	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	-28	0	-28	0	multi-exon	FALSE	canonical	3	983	junction_2	78.1211180853749	3107	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	NA	False	NA	NA	NA	60702119	60678929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
83767	chr17	-	1502	8	FSM	ENSMUSG00000002076.13	ENSMUST00000002145.12	2867	8	-12	1377	-12	-51	multi-exon	FALSE	canonical	3	776	junction_1	207.062940248828	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGTCTTGGTGCTGCTT	NA	False	NA	NA	False	NA	NA	NA	32253494	32165119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
83768	chr8	-	1672	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	257	-4	3	4	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	118	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTTGGGCTGGAATAAC	NA	False	NA	NA	False	NA	NA	NA	46664064	46659829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
83769	chr17	+	5833	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3356	-628	-3356	628	mono-exon	FALSE	NA	NA	NA	NA	NA	1317	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153887	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
83770	chr9	+	758	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-224	-44	224	mono-exon	FALSE	NA	NA	NA	NA	NA	4333	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83771	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	39390	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
83772	chr17	-	2228	4	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	2395	-895	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1070.56246898535	34	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCAGTGATAGATTGT	NA	False	NA	NA	False	NA	NA	NA	47091168	47085727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210
83773	chr2	-	2484	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	351	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGCTCCATTGCTTT	3613	False	NA	NA	False	NA	NA	NA	154734874	154713337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83774	chr1	-	1856	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	57	2581	57	-2581	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	1235	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTCTTAAAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	13730713	13696134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
83775	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	75	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
83776	chr1	-	1132	5	NNC	ENSMUSG00000060743.13	novel	724	5	NA	NA	-10	253	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1107.32165606927	420	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTCTGGTGTGACTGA	NA	False	NA	NA	False	NA	NA	NA	180641122	180628143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180628254_180630140_180630771_180637681_180637836_180639363_180639515_180641035
83777	chrX	-	698	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	-17	-30	-17	30	mono-exon	FALSE	NA	NA	NA	NA	NA	21768	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGCCCAAGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	151693168	151692470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693200
83778	chrM	+	6841	3	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064367.1_ENSMUSG00000064354.1_ENSMUSG00000064370.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	30	580	multi-exon	FALSE	non_canonical	0	0	junction_1	0	206	64	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	4	True	NA	NA	False	NA	NA	NA	7042	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12850_12933_13906_14083
83779	chr16	-	2965	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	362	-3	-362	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	31120	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGAACTTGTGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	22084679	22063660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
83780	chr17	-	1318	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-219	3017	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	94	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGCTCACCTAGGGACGGT	NA	False	NA	NA	False	NA	NA	NA	35821667	35816956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
83781	chr7	+	933	7	Antisense	novelGene_ENSMUSG00000065219.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCGCCAGGCGGCCAAGA	NA	False	NA	NA	False	NA	NA	NA	44774986	44776943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44775459_44775539_44775662_44775901_44775964_44776134_44776221_44776416_44776517_44776632_44776704_44776923
83782	chr11	+	803	6	NNC	ENSMUSG00000071866.13	novel	1170	5	NA	NA	0	71770	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	15042.0886528434	656	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGATTGAAGTCTATCTA	NA	False	NA	NA	False	NA	NA	NA	6365867	6441587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477_6369687_6441398
83783	chr14	-	2797	10	NNC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-1114	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1365.61149871847	23412	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTGTTTAAATATGCTGTT	7611	False	NA	NA	False	NA	NA	NA	52342599	52311015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345_52341452_52342433
83784	chr16	-	2965	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	362	-3	-362	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	20260	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGAACTTGTGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	22084679	22063660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
83785	chr4	-	988	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	8	4	-1	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	50000	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	117744518	117741526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
83786	chr2	-	1938	2	Genic_Genomic	ENSMUSG00000082029.2	novel	411	1	NA	NA	-4011	509	multi-exon	FALSE	canonical	0	0	junction_1	0	792	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	119500528	119495597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_119496646_119499638
83787	chr16	-	2965	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	362	-3	-362	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	414	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGAACTTGTGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	22084679	22063660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
83788	chr2	-	2396	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	140	6	0	2	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	849	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3772	False	NA	NA	False	NA	NA	NA	154734715	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83789	chr14	+	1474	4	NNC	ENSMUSG00000025290.18	novel	686	4	NA	NA	-16	4	intron_retention	FALSE	non_canonical	0	0	junction_3	6034.34674730137	337	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCTACACGTCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	24540818	24545917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_24541884_24541974_24542185_24543450_24543567_24545834
83790	chr7	-	2164	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-63702	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5406.63746647374	17906	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	NA	False	NA	NA	False	NA	NA	NA	99196647	99127102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798_99132977_99196422
83791	chrM	+	3920	2	Genic_Genomic	ENSMUSG00000064351.1_ENSMUSG00000064357.1_ENSMUSG00000064359.1_ENSMUSG00000064354.1	novel	1545	1	NA	NA	-3	-67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-2	True	NA	NA	False	NA	NA	NA	5324	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8800_8946
83792	chr2	+	1856	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	5	0	1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	62441	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
83793	chr8	+	1134	4	Fusion	ENSMUSG00000110679.2_ENSMUSG00000031765.9	novel	549	3	NA	NA	0	71	multi-exon	FALSE	canonical	0	0	junction_3	6956.54676465909	694	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	94905868	94950333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_94905967_94906450_94906517_94906729_94906940_94949573
83794	chr14	+	1156	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-115	-705	-115	705	mono-exon	FALSE	NA	NA	NA	NA	NA	59	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669322	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
83795	chr6	-	3016	14	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-35108	395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	3097.90399651081	1131	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATACAAAACTGAACCTT	NA	False	NA	NA	False	NA	NA	NA	7728362	7674773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108_7693484_7693762_7693918_7728126
83796	chr4	+	2971	19	Antisense	novelGene_ENSMUSG00000040044.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCCACACTTCCGCGCG	NA	False	NA	NA	False	NA	NA	NA	34570801	34614911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_34571808_34572463_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579881_34584808_34584884_34585572_34585689_34586442_34586504_34586944_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599811_34605537_34605682_34607130_34607229_34611021_34611079_34614866
83797	chr11	+	1782	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	46	272	2	-272	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	17	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATATATCATGCCTCCA	3037	False	NA	NA	False	NA	NA	NA	75623740	75656399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
83798	chrM	+	1574	2	Genic_Genomic	ENSMUSG00000064356.1_ENSMUSG00000064359.1_ENSMUSG00000064358.1	novel	784	1	NA	NA	0	1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	991	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-11	True	NA	NA	False	NA	NA	NA	7765	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8851_8902
83799	chr10	+	2161	10	ISM	ENSMUSG00000004207.15	ENSMUST00000165878.2	2564	14	10028	-1	10028	1	3prime_fragment	FALSE	canonical	3	864	junction_2	90.5339442514706	89	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	632	False	NA	NA	False	NA	NA	NA	60130310	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83800	chr6	-	1939	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.24264068711928	9	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCAGCCTTCCCACAGAAA	7478	False	NA	NA	False	NA	NA	NA	122691586	122684602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688581_122689595_122689666_122690091
83801	chr10	+	2202	11	NNC	ENSMUSG00000004207.15	novel	2564	14	NA	NA	8923	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	311.17713604955	392	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	3066	False	NA	NA	False	NA	NA	NA	60129205	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60129255_60130312_60130490_60130729_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83802	chr14	+	814	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	238	117	0	1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
83803	chr14	-	1153	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	-5	25	-5	-25	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	570	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGTCATAATTCCAACA	NA	False	NA	NA	False	NA	NA	NA	31923860	31902143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
83804	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	282	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
83805	chr7	+	1519	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	-25	-722	-25	182	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	131	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAGGGACTCAGTGGCC	2784	False	NA	NA	False	NA	NA	NA	4795963	4798247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
83806	SIRV3	-	3058	7	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-943	intron_retention	FALSE	non_canonical	0	0	junction_1	664.744562469926	91	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAAGCGCACATAAATTC	NA	False	NA	NA	False	NA	NA	NA	9943	1943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2005_4567_4762_6103_7989_8127_8208_8755_8976_9189_9299_9434
83807	chr7	-	2146	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-63684	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5406.63746647374	737	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	NA	False	NA	NA	False	NA	NA	NA	99196629	99127102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798_99132977_99196422
83808	chr6	-	2017	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	55	13	2	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	34	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294533	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83809	chr5	+	1429	12	ISM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	1486	2	1486	-2	3prime_fragment	FALSE	canonical	3	1482	junction_9	138.585355743117	26774	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTGCTTCCAGATCTC	NA	False	NA	NA	False	NA	NA	NA	21991766	22008783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
83810	chr11	+	1410	5	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	8	1358	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5254.37698495264	1952	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAATAGGGAAAAAAAAAAAA	3965	False	NA	NA	False	NA	NA	NA	100210718	100214280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142_100212886_100214147
83811	chr9	+	758	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-224	-44	224	mono-exon	FALSE	NA	NA	NA	NA	NA	89	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83812	chr8	+	2702	7	Fusion	ENSMUSG00000054717.8_ENSMUSG00000096917.3	novel	2628	5	NA	NA	2249	1280	multi-exon	FALSE	canonical	2	5	junction_2	3037.26825819226	2191	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57943336	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_57943502_57959561_57959836_57963795_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
83813	chr17	-	704	6	Antisense	novelGene_ENSMUSG00000024217.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCCGCCGCCAGGAACT	9800	False	NA	NA	False	NA	NA	NA	28070933	28059108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067029_28070608
83814	chr5	+	2914	10	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	-42522	530	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3111.7633721012	22973	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCGAATTTCACTGG	4633	False	NA	NA	False	NA	NA	NA	108005845	108057401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108006043_108028358_108028545_108048411_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
83815	chr10	-	3777	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	61	-108	-10	108	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	25	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCATTGGGGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	77845580	77822672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
83816	chr7	-	1012	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	30	5	4	-5	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	112	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778155	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
83817	chr14	+	1155	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-114	-705	-114	705	mono-exon	FALSE	NA	NA	NA	NA	NA	1616	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669323	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
83818	chr5	+	426	1	Antisense	novelGene_ENSMUSG00000067719.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTACGTCTCCCCGAACCA	NA	False	NA	NA	False	NA	NA	NA	24786447	24786873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_24786400_24786900
83819	chr6	-	3585	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2952.84932075972	149	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716847_122717372_122717440_122719334
83820	chr2	-	2256	11	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5263.83387750791	20	92	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTAGTGCTCCATTGCTT	3767	False	NA	NA	False	NA	NA	NA	154734720	154713338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154713692_154713765_154714092_154714159_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83821	chr2	-	1047	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	73	46	7	-46	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTTTGTAAATTATCTT	9577	False	NA	NA	False	NA	NA	NA	10085248	10060886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
83822	chr17	-	1315	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-217	3016	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	31477	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGCTCACCTAGGGACGG	NA	False	NA	NA	False	NA	NA	NA	35821665	35816957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
83823	chr9	-	1285	5	Fusion	ENSMUSG00000060461.6_ENSMUSG00000083032.2	novel	619	3	NA	NA	-1389	0	multi-exon	FALSE	non_canonical	0	0	junction_3	89875.6986993008	23856	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	NA	NA	NA	78298138	78274333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_78274577_78275002_78275186_78275266_78275276_78296093_78296762_78297956
83824	chr17	-	854	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	43	800	-7	3	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	31928	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCTTTATTCGGTTTGCT	5495	False	NA	NA	False	NA	NA	NA	66408511	66386432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
83825	chr2	+	1892	9	FSM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	16	-222	-3	222	multi-exon	FALSE	canonical	3	842	junction_6	46.6797600679352	1591	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCAAATAGTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	31560742	31571583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
83826	chr2	-	1450	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	135	957	-5	-949	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	587	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAACAACAAACTTGATT	3767	False	NA	NA	False	NA	NA	NA	154734720	154714286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83827	chr14	+	1302	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	289	363	-8	-3	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	99	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATGGTGTGCATGTTT	NA	False	NA	NA	False	NA	NA	NA	21881625	21895584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
83828	chr10	+	2576	14	NNC	ENSMUSG00000004207.15	novel	2657	15	NA	NA	21	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	282.197106825339	6	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	7011	False	NA	NA	False	NA	NA	NA	60113470	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130522_60130807_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83829	chr11	+	1020	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	43	736	0	329	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	35401	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCAAGCGAAGCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	95557825	95570863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
83830	chr6	-	1868	12	NNC	ENSMUSG00000029752.13	novel	2016	12	NA	NA	281	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3318.80027113254	43	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	2231	False	NA	NA	False	NA	NA	NA	7692590	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677317_7677983_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7692522
83831	chr4	+	1648	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4919.77023584981	101	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150321722	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321780_150323970_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
83832	chr5	-	4121	10	NNC	ENSMUSG00000009013.6	novel	2030	3	NA	NA	-12752	17415	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1188.84622976426	1289	26	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGGCGGGGAGAACGTCG	NA	False	NA	NA	False	NA	NA	NA	115451810	115417753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115417972_115421622_115421772_115422446_115422669_115428989_115429096_115432881_115432973_115433722_115433833_115433919_115436893_115438571_115438710_115441518_115441565_115451742
83833	chr6	-	1836	5	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.89711431702997	171	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGCAAGACACCAACCA	7576	False	NA	NA	False	NA	NA	NA	122691488	122684585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688759_122689580_122689666_122690091_122690773_122690987
83834	chr19	+	921	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	3	5	3	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	69	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4872	False	NA	NA	False	NA	NA	NA	9960012	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
83835	chr5	+	1091	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	46	221	-24	-221	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAAACTCCGGTCTGG	NA	False	NA	NA	False	NA	NA	NA	115697571	115701565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
83836	chr10	+	2712	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	-62	-4	-62	1	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	26812	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	6927	False	NA	NA	False	NA	NA	NA	60113386	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83837	chr13	+	1157	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	14	1740	14	-1740	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	20791	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTGTCAAACAAAATTGGT	NA	False	NA	NA	False	NA	NA	NA	14787838	14800481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
83838	chrM	-	832	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1057	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGCTTGATACCCTCTC	5379	False	NA	NA	False	NA	NA	NA	1023	191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1000
83839	chr5	-	3738	6	NNC	ENSMUSG00000009013.6	novel	2030	3	NA	NA	11	6381	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1483.72401746416	7	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGACCATGGGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	115438960	115428787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115429096_115432881_115432973_115433722_115433833_115433919_115436893_115438571_115438710_115438842
83840	chr12	-	1764	1	FSM	ENSMUSG00000066632.4	ENSMUST00000085735.4	1255	1	-77	-432	-77	432	mono-exon	FALSE	NA	NA	NA	NA	NA	53540	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCCATCCATAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	10950317	10948553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_10948600_10950300
83841	chr10	+	1812	8	ISM	ENSMUSG00000004207.15	ENSMUST00000165878.2	2564	14	11448	-1	11448	1	3prime_fragment	FALSE	canonical	3	931	junction_1	87.6689040349763	19505	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	2052	False	NA	NA	False	NA	NA	NA	60131730	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
83842	chr9	+	808	8	ISM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	7742	666	-2656	-666	3prime_fragment	FALSE	canonical	3	619	junction_7	106.961751699056	19183	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGAGGGAAGAGGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	108547038	108561174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
83843	chr4	-	1651	2	Genic_Genomic	ENSMUSG00000095865.2	novel	635	1	NA	NA	-185476	365	multi-exon	FALSE	non_canonical	0	0	junction_1	0	668	35	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATGACATCATGAAGT	NA	False	NA	NA	False	NA	NA	NA	146835020	146648544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_146649147_146833971
83844	chr5	+	1088	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	222	-22	-222	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	557	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTAAAACTCCGGTCTG	NA	False	NA	NA	False	NA	NA	NA	115697573	115701564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
83845	SIRV6	+	1088	9	FSM	SIRV6A	SIRV605	1088	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	6480	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1130	11331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
83846	chr14	+	1751	1	Intergenic	novelGene_631	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	196742	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCTGGTCTGTTTCTAC	NA	False	NA	NA	False	NA	NA	NA	99481772	99483523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_99481800_99483500
83847	chr17	-	1316	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-217	3017	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	31616	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGCTCACCTAGGGACGGT	NA	False	NA	NA	False	NA	NA	NA	35821665	35816956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
83848	chr3	-	1297	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	674	0	-149	0	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	23	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAAGTTTCATACTCTG	NA	False	NA	NA	False	NA	NA	NA	105866741	105850013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
83849	chr8	+	2529	4	ISM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	664	4	23	-4	3prime_fragment	FALSE	canonical	3	6480	junction_3	312.16377467961	13	98	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAGGATGTTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	57965604	57969029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_57965783_57966095_57966242_57966323_57966499_57966999
83850	chr17	-	1423	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	12	27	12	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	38309	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGGTCTAGTATTG	9701	False	NA	NA	False	NA	NA	NA	29483148	29469803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
83851	chr17	+	572	3	Genic_Genomic	ENSMUSG00000082741.3	novel	346	1	NA	NA	-11039	44	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7901	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	27738001	27749430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_27738010_27745181_27745286_27748970
83852	chr17	-	1161	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	23	-1	23	1	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	1824	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTGTGTTCTGGCGCT	NA	False	NA	NA	False	NA	NA	NA	24388412	24382838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
83853	chr11	-	594	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	24	7	-21	-7	multi-exon	FALSE	canonical	3	1974	junction_5	551.930285452792	22167	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATCGTCTCTGAGTA	NA	False	NA	NA	False	NA	NA	NA	115310764	115306521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
83854	chr18	+	2493	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	-22	0	-22	0	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	23782	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	NA	False	NA	NA	NA	77861406	77870569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
83855	chr14	+	1143	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-102	-705	-102	705	mono-exon	FALSE	NA	NA	NA	NA	NA	9557	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669335	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
83856	chr14	+	814	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	238	117	0	1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	381	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
83857	chr15	-	1202	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	9	-9	9	9	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	18342	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAGCAATCCAGGC	NA	False	NA	NA	False	NA	NA	NA	82128940	82117970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
83858	chr13	-	2860	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	32	8	-9	-8	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	4394	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGTTGCTTTTGGTCAA	NA	False	NA	NA	False	NA	NA	NA	74498367	74470380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
83859	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-38	-224	-38	224	mono-exon	FALSE	NA	NA	NA	NA	NA	615	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777672	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83860	chr11	+	1791	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	218	13	-57	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	778	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5349	False	NA	NA	False	NA	NA	NA	52251904	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
83861	chr14	+	1143	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-102	-705	-102	705	mono-exon	FALSE	NA	NA	NA	NA	NA	438	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669335	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
83862	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	253	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	NA	False	NA	NA	NA	52122863	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
83863	chrX	+	2291	18	NNC	ENSMUSG00000031360.15	novel	3353	19	NA	NA	16	-17539	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_17	53.6018901696366	9	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	161684643	161796776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161796315
83864	chr7	-	1014	3	Genic_Genomic	ENSMUSG00000108366.2	novel	795	1	NA	NA	-406	32712	multi-exon	FALSE	non_canonical	0	0	junction_1	0	549	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCTAAAATTGAATGGCT	NA	False	NA	NA	False	NA	NA	NA	16454241	16420328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_16420336_16452992_16453848_16454089
83865	chr13	+	642	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	38	12	38	-12	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	34513	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATATCACCATTGTT	NA	False	NA	NA	False	NA	NA	NA	51799305	51804684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_51799508_51803620_51803749_51804372
83866	chr15	-	1053	7	NNC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	-420	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	464.743089124399	26715	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGGAAGGAAGGAAA	NA	False	NA	NA	False	NA	NA	NA	82129369	82118296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823_82128930_82129181
83867	chr11	+	738	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	430	2	3	0	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	129	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTGTTTGTATTGG	NA	False	NA	NA	False	NA	NA	NA	6365872	6369815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
83868	chr4	-	988	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	8	4	-1	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	449354	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	117744518	117741526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
83869	chr6	-	1755	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	38	292	-15	-292	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	255	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTTGTGTGTCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	83294550	83282964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83870	chrX	-	983	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-189	-44	189	mono-exon	FALSE	NA	NA	NA	NA	NA	287	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGAGACCATTAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	68649895	68648912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68648900_68649900
83871	chr11	-	1928	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	-155	1	-49	0	multi-exon	FALSE	canonical	3	9657	junction_10	1402.57834362292	311	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGGCTTCTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	69563298	69557762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
83872	chr10	+	858	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	28	-1	28	1	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	13562	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCAGGTGCTAGATCTTT	4940	False	NA	NA	False	NA	NA	NA	127871471	127884503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83873	chr9	-	1039	2	Genic_Genomic	ENSMUSG00000082465.2	novel	750	1	NA	NA	-1901	25	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACCTTGAATCTTAAAAAA	6864	False	NA	NA	False	NA	NA	NA	53603484	53600808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_53601646_53603282
83874	chr7	-	1821	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	0	0	0	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	2915	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	8422	False	NA	NA	False	NA	NA	NA	99132858	99127102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
83875	chr4	-	2571	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	330	-1027	-10	1027	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	30441	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCCAGGTTTTTGCGAAT	22	True	NA	NA	False	NA	NA	NA	43031380	43026662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
83876	chr2	+	1856	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	5	0	1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	145	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
83877	chrM	+	3688	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-2310	0	-2310	0	mono-exon	FALSE	NA	NA	NA	NA	NA	981	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	80	False	NA	NA	False	NA	NA	NA	7856	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7900_11500
83878	chr10	+	858	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	28	-1	28	1	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	25434	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCAGGTGCTAGATCTTT	4940	False	NA	NA	False	NA	NA	NA	127871471	127884503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83879	chr7	-	2137	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	-15	5	-15	1	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	5854	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8669	False	NA	NA	False	NA	NA	NA	141941790	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
83880	chr7	-	2369	6	ISM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	5	0	-5	intron_retention	FALSE	canonical	3	15796	junction_2	965.492703234986	106	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632
83881	chr10	+	1624	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	11	149	11	-149	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	227	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGAGTCTCTGCTGTGTT	9227	False	NA	NA	False	NA	NA	NA	127102266	127117670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
83882	chr2	-	2440	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	96	6	-8	2	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3728	False	NA	NA	False	NA	NA	NA	154734759	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
83883	chr11	-	1012	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	39	0	-8	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427063	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
83884	chr2	-	2581	7	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	91	multi-exon	FALSE	canonical	0	0	junction_1	62.8640508469577	89	62	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	156681710	156631640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
83885	chr9	+	884	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-22	-64	-22	64	mono-exon	FALSE	NA	NA	NA	NA	NA	231	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACACATCCTTGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	84306014	84306898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
83886	chr18	+	2927	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	-22	-434	-22	434	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	22	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAGTGCTCTGTGTACAT	NA	False	NA	NA	False	NA	NA	NA	77861406	77871003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
83887	chr3	+	1008	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	64	7	-17	-7	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	2221	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTAGCATCTTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	32791202	32805708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
83888	chr7	+	1861	8	NNC	ENSMUSG00000063229.16	novel	934	7	NA	NA	40	-1	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_1	2903.73895492817	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTCTGCTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	46495560	46505049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495915_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
83889	SIRV5	+	4297	19	NIC	SIRV5A	novel	2474	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	1532	junction_18	3305.0829876957	8049	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1008	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
83890	chrM	+	3505	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	-1461	-900	-1461	900	mono-exon	FALSE	NA	NA	NA	NA	NA	44819	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTAGTTCCCAAAATATGA	224	False	NA	41	True	NA	NA	NA	12683	16188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12700_16200
83891	chr13	-	1136	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	-106	0	-106	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1609	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAACGGCCGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	97235851	97234715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97234700_97235900
83892	chrX	-	3227	2	Genic_Genomic	ENSMUSG00000087569.2	novel	2200	1	NA	NA	-77	56976	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2743	69	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAACACTCTCTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	151274648	151215680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_151217537_151273277
83893	chr1	+	621	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	179	65	19	-65	multi-exon	FALSE	canonical	3	7132	junction_3	70.6588045940962	211	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAGACCAGGCTTGCCTT	NA	False	NA	NA	False	NA	NA	NA	36730743	36732697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
83894	chr10	+	851	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	28	6	28	-6	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	580	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGACTCAGCAGGTGCTA	4940	False	NA	NA	False	NA	NA	NA	127871471	127884496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83895	chr10	-	1348	8	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	2053	3612	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGACGCTTCGGGCCAG	2756	False	NA	8	True	NA	NA	NA	126903216	126899536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_126899627_126900086_126900322_126900452_126900588_126900701_126900871_126901022_126901134_126901821_126901872_126901967_126902109_126902799
83896	chr4	+	2051	4	FSM	ENSMUSG00000028936.16	ENSMUST00000139685.8	2051	4	-4	4	-4	-3	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	15963	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGTCACTGTGCAAGG	NA	False	NA	NA	False	NA	NA	NA	152410319	152418524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
83897	chr11	-	3163	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	21	-1317	21	1317	multi-exon	TRUE	canonical	3	3168	junction_5	160.793780974265	6859	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTAACCAGATCCTCC	NA	False	NA	NA	False	NA	NA	NA	120472429	120467612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
83898	chr11	-	1280	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	130	223	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	76	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113076	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
83899	chr2	-	1039	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	81	46	-2	-46	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	328	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTTTGTAAATTATCTT	9585	False	NA	NA	False	NA	NA	NA	10085240	10060886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
83900	SIRV5	+	2576	18	NNC	SIRV5A	novel	2085	17	NA	NA	18	0	intron_retention	FALSE	canonical	0	0	junction_1	3490.2847515724	2861	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	1074	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858_10992_11311
83901	chr15	+	3115	13	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	-482	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_11	5489.82485806444	173	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	103148376	103155119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682_103154394_103154772_103154849_103154971
83902	SIRV5	+	936	11	ISM	SIRV5A	SIRV508	2085	17	0	4268	0	3125	5prime_fragment	FALSE	canonical	3	2297	junction_10	2677.15523644035	152	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTCGTTATTG	NA	False	NA	NA	False	NA	NA	NA	1008	6723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658
83903	chr17	-	1073	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	685	0	11	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	30174	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTGGATATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	15718560	15695967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
83904	chr1	-	726	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-41	-31	41	mono-exon	FALSE	NA	NA	NA	NA	NA	5722	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
83905	chr6	-	6141	7	NIC	ENSMUSG00000030265.15	novel	1194	6	NA	NA	3359	5545	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	465.255365961055	1054	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAGTGGGCGGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	145192537	145156879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_145156979_145160909_145160998_145161076_145166451_145170799_145170924_145177820_145177981_145179973_145180153_145192420
83906	chr8	+	648	3	NNC	ENSMUSG00000034880.8	novel	607	2	NA	NA	-94357	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	452	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTACGTATGTATTAACT	NA	False	NA	NA	False	NA	NA	NA	71823245	71918391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71823277_71917592_71917712_71917893
83907	chr5	-	2524	8	NNC	ENSMUSG00000029270.11	novel	2721	5	NA	NA	63463	7502	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2814	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTATGTAGCACCACCAG	8817	False	NA	NA	False	NA	NA	NA	108057401	108048416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108048512_108049734_108049804_108049885_108049997_108051129_108051269_108051530_108051732_108052579_108052760_108055053_108055142_108055760
83908	chr10	+	858	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	28	-1	28	1	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	768	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCAGGTGCTAGATCTTT	4940	False	NA	NA	False	NA	NA	NA	127871471	127884503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83909	chr10	+	858	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	28	-1	28	1	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCAGGTGCTAGATCTTT	4940	False	NA	NA	False	NA	NA	NA	127871471	127884503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83910	chrX	+	1563	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	25	7	7	-7	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	32781	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTTGCCTGACAATTT	NA	False	NA	NA	False	NA	NA	NA	74557929	74578541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
83911	chr3	+	1008	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	64	7	-17	-7	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTAGCATCTTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	32791202	32805708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
83912	chrX	-	835	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-45	-40	-45	40	mono-exon	FALSE	NA	NA	NA	NA	NA	110	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGCTTTCATTAATAGT	NA	False	NA	NA	False	NA	NA	NA	68649896	68649061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68649100_68649900
83913	chr17	+	5832	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3355	-628	-3355	628	mono-exon	FALSE	NA	NA	NA	NA	NA	26068	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153888	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
83914	chr9	+	932	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	71	6	1	-6	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	22136	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGATGAACCATAGTCGA	NA	False	NA	NA	False	NA	NA	NA	120400580	120403714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
83916	chr10	+	858	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	28	-1	28	1	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	9774	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCAGGTGCTAGATCTTT	4940	False	NA	NA	False	NA	NA	NA	127871471	127884503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
83917	chr6	-	1521	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	84	570	0	-103	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	808	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGAAGGGGAGTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	87828004	87820166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
83918	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	40	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
83919	chr1	-	1598	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	-386	3	-386	-3	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	12197	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGAAGCTCCTTTTATT	203	False	NA	NA	False	NA	NA	NA	59710379	59678595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
83920	chr17	+	5833	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3356	-628	-3356	628	mono-exon	FALSE	NA	NA	NA	NA	NA	888409	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153887	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
83922	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-38	-224	-38	224	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGCACCTGACACAAACAC	NA	False	NA	NA	False	NA	NA	NA	96777672	96778424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
83923	chr14	-	2165	9	NNC	ENSMUSG00000060373.16	novel	2498	9	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1466.39165982353	793	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTAGAAGCTGGTGTG	8754	False	NA	NA	False	NA	NA	NA	52341456	52311002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52311891_52312327_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52341345
83924	chr7	-	832	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	989	0	-3	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	1869	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
83925	chrM	+	1546	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	-704	-161	704	mono-exon	FALSE	NA	NA	NA	NA	NA	10	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGCAGCATGATACTG	-11	True	NA	NA	False	NA	NA	NA	7765	9311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9300
83926	chr11	-	3519	11	NIC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	0	142	intron_retention	FALSE	canonical	3	3830	junction_6	142.502245596341	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATGTCTGTTTTTCATA	9654	False	NA	NA	False	NA	NA	NA	106679320	106672659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
83927	chr6	+	2483	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	25	13	25	-13	multi-exon	FALSE	canonical	3	978	junction_2	33.5	12956	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATTGGAAAAGGCTGTC	NA	False	NA	NA	False	NA	NA	NA	35229613	35240418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_35229718_35237344_35237399_35238093
83928	chr11	-	1965	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	39	-953	-8	953	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	16	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGCCCGGTTTGGCTCAT	NA	False	NA	NA	False	NA	NA	NA	115427063	115412974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
83929	SIRV6	+	1528	10	FSM	SIRV6A	SIRV612	1528	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	32	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
83930	chrM	+	1497	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	116	-68	116	68	mono-exon	FALSE	NA	NA	NA	NA	NA	8087	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	37	False	NA	NA	False	NA	NA	NA	5443	6940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_6900
83931	chr12	+	3471	11	FSM	ENSMUSG00000060073.10	ENSMUST00000160027.8	2846	11	100	-725	2	725	multi-exon	FALSE	canonical	3	3391	junction_8	417.753084967664	35053	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACCCCTTGAAGGGTAAA	4820	False	NA	NA	False	NA	NA	NA	71021494	71043846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
83932	chr17	-	3223	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10128	-12886	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	1163	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAACAAAACCCAAACC	2340	False	NA	NA	False	NA	NA	NA	6744549	6721686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
83933	chr11	-	1669	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	-2	326	-2	-326	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	24247	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTCAAACCTAAATTGAAT	NA	False	NA	NA	False	NA	NA	NA	115915332	115913112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
83934	chr10	+	785	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	174	0	174	0	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	11050	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	829	False	NA	NA	False	NA	NA	NA	79889495	79892273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
83935	chr7	-	1039	3	Genic_Genomic	ENSMUSG00000108366.2	novel	795	1	NA	NA	-428	32712	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4654	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCTAAAATTGAATGGCT	NA	False	NA	NA	False	NA	NA	NA	16454263	16420328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_16420336_16452992_16453848_16454086
83936	chr5	+	2526	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	-530	-21	530	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	28345	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCGAATTTCACTGG	NA	False	NA	NA	False	NA	NA	NA	108048416	108057401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
83937	chr11	-	1352	1	FSM	ENSMUSG00000082087.5	ENSMUST00000122180.2	951	1	-39	-362	-39	362	mono-exon	FALSE	NA	NA	NA	NA	NA	304	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAAATGCTGATG	5817	False	NA	NA	False	NA	NA	NA	40564722	40563370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40563400_40564700
83938	chr2	+	2403	8	FSM	ENSMUSG00000039356.16	ENSMUST00000149094.8	2076	8	15	-342	0	-27	multi-exon	FALSE	canonical	3	842	junction_5	49.3699073839727	112	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAGAATAAAGGGAGGTA	NA	False	NA	NA	False	NA	NA	NA	31560745	31571334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31566749_31568462_31568640_31569862_31569992_31570501
83939	chr6	-	5184	16	FSM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	-2	-1811	-2	1811	multi-exon	FALSE	canonical	1	1040	junction_8	575.928791894739	32	91	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAGAGATGCCAAGTTT	NA	False	NA	NA	False	NA	NA	NA	88875764	88858644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
83940	chr2	-	881	5	NNC	ENSMUSG00000027239.15	novel	771	5	NA	NA	-21	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1148.26420631316	5447	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTCTTTTTTAATATATAA	NA	False	NA	NA	False	NA	NA	NA	91762065	91760165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761877
83941	chr17	+	5833	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3356	-628	-3356	628	mono-exon	FALSE	NA	NA	NA	NA	NA	151	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153887	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
83942	chr11	+	2063	12	Fusion	ENSMUSG00000017404.13_ENSMUSG00000085897.3	novel	751	6	NA	NA	-2	44	multi-exon	FALSE	non_canonical	0	0	junction_6	7477.76363019659	438	54	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTCTTCTTTTTATA	NA	False	NA	NA	False	NA	NA	NA	97917780	98076977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096_97921304_97924004_97924125_97925263_97925523_97933878_97934001_97943982_97943993_98063471_98063485_98076143
83943	chr10	+	1347	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	70	636	0	-13	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGTCTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	126899472	126903153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
83944	chr5	+	1403	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	7	0	4	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	59579	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582990	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
83945	chr11	+	998	4	Antisense	novelGene_ENSMUSG00000064567.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2419	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGATTTAATTTTTTTAA	796	False	NA	NA	False	NA	NA	NA	72442159	72522010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_72442170_72463316_72464129_72521686_72521694_72521841
83946	chr17	+	1234	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	-33	1	0	-1	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	136	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
83947	chr11	+	1807	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	13	-73	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	320	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
83948	chr6	-	2017	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	55	13	2	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	711330	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294533	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83949	SIRV4	-	590	4	FSM	SIRV4A	SIRV404	592	4	-1	3	-1	-2	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	1997	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATTTGATATTTAGAGC	NA	False	NA	NA	False	NA	NA	NA	14624	8325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
83950	chrM	+	2673	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-56	-1035	-56	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	344	False	NA	-34	True	NA	NA	NA	1037	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_3700
83951	chr16	-	3278	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	677.96017582156	52105	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACGTGTGGGTATTAA	NA	False	NA	NA	False	NA	NA	NA	22084679	22063290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22063826_22063882_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
83952	chr6	-	2894	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	-498	-395	-498	395	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	1130	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATACAAAACTGAACCTT	1069	False	NA	NA	False	NA	NA	NA	7693752	7674773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
83953	chr9	+	910	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	67	0	67	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	1335	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78099295	78116631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
83954	chr7	-	1705	6	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	105	989	1	-3	intron_retention	FALSE	canonical	3	4974	junction_1	3734.4104969861	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8440	False	NA	NA	False	NA	NA	NA	99132840	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776
83955	chrX	-	3179	2	Genic_Genomic	ENSMUSG00000087569.2	novel	2200	1	NA	NA	-77	56976	multi-exon	FALSE	non_canonical	0	0	junction_1	0	212	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAACACTCTCTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	151274648	151215680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_151217526_151273314
83956	chrX	+	5846	5	Antisense	novelGene_ENSMUSG00000049775.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10519	18	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	165990088	166001585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_165990534_165990933_165991054_165992106_165992345_165996330_165996405_165996616
83957	chr3	+	2950	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	46	-1244	46	1244	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	8687	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTACTCACCTGCAGGGCA	NA	False	NA	NA	False	NA	NA	NA	79498717	79512201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
83958	chr19	-	593	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	14	73	0	-58	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	454	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGGCTTTTTGCCCTCG	1988	False	NA	NA	False	NA	NA	NA	44543865	44538751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
83959	chr11	-	1192	5	NNC	ENSMUSG00000018565.18	novel	899	7	NA	NA	-294	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	254.339340252349	2632	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAAAACCTCTGGTAAT	7341	False	NA	NA	False	NA	NA	NA	69873637	69859058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69862058_69873621
83960	chr12	-	1759	1	FSM	ENSMUSG00000066632.4	ENSMUST00000085735.4	1255	1	-72	-432	-72	432	mono-exon	FALSE	NA	NA	NA	NA	NA	1832	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCCATCCATAAACTGAA	NA	False	NA	NA	False	NA	NA	NA	10950312	10948553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_10948600_10950300
83961	chr17	+	1234	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	-33	1	0	-1	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	9738	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
83962	chr6	-	5436	11	ISM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	150	0	6	0	3prime_fragment	FALSE	canonical	3	8132	junction_7	334.52026844423	50	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1717	False	NA	NA	False	NA	NA	NA	7693104	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251
83963	chr8	+	2855	16	NNC	ENSMUSG00000005161.16	novel	1500	6	NA	NA	-11920	6	intron_retention	FALSE	non_canonical	0	0	junction_1	1836.40382148251	18182	15	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTTGGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	85684295	85700946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85684496_85684595_85684719_85686404_85686491_85686593_85686732_85691754_85691851_85691947_85692071_85692193_85692276_85692492_85692920_85693418_85693483_85694291_85694495_85695909_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
83964	chr11	-	887	4	Fusion	ENSMUSG00000087523.2_ENSMUSG00000018293.5	novel	861	3	NA	NA	-244	-24	multi-exon	FALSE	non_canonical	0	0	junction_3	4652.0544565457	74	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGAATAAAAAAAGATTCTA	NA	False	NA	NA	False	NA	NA	NA	70545714	70542699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_70543048_70543612_70543806_70545174_70545372_70545565
83965	chr5	-	1041	8	Antisense	novelGene_ENSMUSG00000077426.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTATGTAGCACCACCAG	9611	False	NA	NA	False	NA	NA	NA	108055918	108048416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_108048512_108049734_108049804_108049885_108049997_108051129_108051269_108051530_108051732_108052579_108052760_108055053_108055142_108055760
83966	chr6	-	526	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	-16	7	-16	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	63	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115785724	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
83967	chr5	+	1659	7	ISM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	16	1	16	-1	intron_retention	FALSE	canonical	3	424	junction_4	38.3608596821755	22211	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGTTTGAGGTTTGTAA	8055	False	NA	NA	False	NA	NA	NA	122510529	122520964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110
83968	chr10	-	2713	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	58	959	-13	-959	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	1230208	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845583	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
83969	chrX	-	1099	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	49	9	-28	-9	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	47	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCTATAATGAATAAGTTA	NA	False	NA	NA	False	NA	NA	NA	7537580	7534188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
83970	chr8	-	1039	5	Antisense	novelGene_ENSMUSG00000054717.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	880	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGACCTCCGCAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	57967523	57965019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_57965036_57965604_57965781_57966093_57966242_57966323_57966497_57966997
83971	chr7	-	1002	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-21574	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5406.63746647374	14155	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	7702	False	NA	NA	False	NA	NA	NA	99154519	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798_99132851_99154341
83972	SIRV1	-	1348	5	NIC	SIRV1A	novel	1300	4	NA	NA	-1	0	intron_retention	FALSE	canonical	3	1547	junction_4	1804.06430040617	11355	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10641	1006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV1_-_1485_6337_6814_7552_7815_10282_10367_10593
83973	chr1	+	1207	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9439.51567547297	15510	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	86454443	86458417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457279_86457452_86457527_86457686
83974	chr15	-	2502	5	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	80	18726	80	2370	5prime_fragment	FALSE	canonical	3	46	junction_2	5.71729831301464	14	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGAAACTGGTGCT	7188	False	NA	NA	False	NA	NA	NA	37961267	37942921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
83975	chr17	+	971	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	230	1	199	-1	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	21829	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547819	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
83976	chrM	+	6232	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	-2685	-1723	-2685	1723	mono-exon	FALSE	NA	NA	NA	NA	NA	7389	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9100_15300
83978	chr10	-	1138	5	Fusion	ENSMUSG00000112339.2_ENSMUSG00000112502.2_ENSMUSG00000112760.2	novel	331	2	NA	NA	12	50	multi-exon	TRUE	non_canonical	0	0	junction_1	0	55	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAATTCTATCAGC	7660	False	NA	NA	False	NA	NA	NA	81845622	81552822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_81552996_81553194_81553412_81711934_81712108_81712304_81712522_81845264
83979	chr8	+	888	8	NNC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	331.893577730536	43	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAACCCACATGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	71819660	71822369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820763_71821490_71821522_71821775_71821948_71822170
83980	chr11	+	1807	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	13	-73	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	104086	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
83981	chr7	+	1063	2	Genic_Genomic	ENSMUSG00000107470.3	novel	795	1	NA	NA	-23	20112	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9386	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATATAATAATAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	3230818	3251748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_3231700_3251566
83982	chr2	+	7331	11	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	-42	73931	intron_retention	TRUE	non_canonical	0	0	junction_4	88.2836904529936	123	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTACAGAGAGGAACTTG	NA	False	NA	NA	False	NA	NA	NA	177189965	177275487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177198701_177198829_177199035_177199097_177200246_177204228_177259236_177261386_177261468_177261792_177261875_177262086_177263225_177263286_177263477_177263606_177266760_177266817_177275396
83983	chr16	-	3278	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	677.96017582156	103	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACGTGTGGGTATTAA	NA	False	NA	NA	False	NA	NA	NA	22084679	22063290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22063826_22063882_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
83984	chr16	-	3278	10	NNC	ENSMUSG00000022858.17	novel	1687	10	NA	NA	-3	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	677.96017582156	183	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACGTGTGGGTATTAA	NA	False	NA	NA	False	NA	NA	NA	22084679	22063290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22063826_22063882_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
83985	chr2	-	854	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	-32	-72	-32	72	mono-exon	FALSE	NA	NA	NA	NA	NA	48869	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATGTGTCAAATGGCAC	NA	False	NA	NA	False	NA	NA	NA	75022198	75021344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75021300_75022200
83986	chr7	+	1191	9	Antisense	novelGene_ENSMUSG00000108850.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1351	31	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTCTTAGGGCATGGTC	NA	False	NA	NA	False	NA	NA	NA	99128091	99234443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99128156_99128474_99128676_99129080_99129270_99130902_99130999_99131467_99131564_99131778_99131908_99132798_99132861_99227974_99228139_99234253
83987	chr14	-	1214	4	NNC	ENSMUSG00000022193.8	novel	899	3	NA	NA	-6	22242	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	876.113006409561	22704	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAACCAAAAAAAC	8632	False	NA	NA	False	NA	NA	NA	54855471	54829333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54829655_54851573_54851939_54853971_54854279_54855250
83988	chr10	-	1332	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1558.53103260469	20217	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTATGAGTTTGTTATT	NA	False	NA	NA	False	NA	NA	NA	90959857	90952653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952989_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
83989	chr2	-	1754	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	39	2	-32	-2	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	174	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
83990	chr8	+	672	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	73	0	-13	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	121395033	121400946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
83991	chr9	+	1389	8	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-18470	345	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1877.71814407046	2640	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTGGTGAGACTGATAG	605	False	NA	NA	False	NA	NA	NA	119938284	119960970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119938300_119956853_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
83992	chr2	+	839	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	235	876	-183	-16	multi-exon	FALSE	canonical	3	2160	junction_3	102.069780052668	44	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGATTTTACATAAACTGA	NA	False	NA	NA	False	NA	NA	NA	125089636	125099652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
83993	chr17	-	1313	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-217	3014	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	33	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGGCTCACCTAGGGAC	NA	False	NA	NA	False	NA	NA	NA	35821665	35816959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
83994	chr5	+	956	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	261	-12	14	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	2409	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	121342596	121347043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
83995	chrM	-	2478	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCTTGCGGTACTAG	-1	True	NA	5	True	NA	NA	NA	3704	1226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1200_3700
83996	chr17	-	1092	2	Genic_Genomic	ENSMUSG00000118161.2	novel	882	1	NA	NA	-1564	43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1900	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAGAAAA	5715	False	NA	NA	False	NA	NA	NA	31865317	31862828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_31863754_31865150
83997	chr8	+	2207	16	NNC	ENSMUSG00000060098.12	novel	3472	18	NA	NA	0	-1109	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	279.869699840638	167	67	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTGAATGGCTTGTGGC	1920	False	NA	NA	False	NA	NA	NA	106937668	106978317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968895_106971227_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
83998	chr6	-	2017	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	55	13	2	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	74640	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294533	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
83999	chr4	+	3382	12	NNC	ENSMUSG00000028618.12	novel	1775	8	NA	NA	-39581	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	796.787558401322	4727	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTCTGAAGCTTGAGT	NA	False	NA	NA	False	NA	NA	NA	106996014	107058181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_106996997_107004711_107004904_107022742_107022887_107034761_107034902_107035434_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
84000	chrX	-	1335	8	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	81	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7252.7995580032	30	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232861	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232172_101232278_101232508
84001	chr7	-	651	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	-4	8	-4	-8	multi-exon	FALSE	canonical	3	9574	junction_1	0	231	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCTGGCTGTGACTCAC	NA	False	NA	NA	False	NA	NA	NA	140535904	140534757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140535087_140535582
84002	chr3	-	740	5	NNC	ENSMUSG00000028062.16	novel	668	4	NA	NA	-3291	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1163.36634384875	13108	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	88463672	88457125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102_88460209_88463477
84003	chr4	+	2323	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	55	-84	0	84	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	16321	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGCTGGCTTATAGTCAT	NA	False	NA	NA	False	NA	NA	NA	116542795	116558103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
84004	chrM	+	3101	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	249	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	553	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	245	False	NA	-25	True	NA	NA	NA	11990	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84005	chr19	-	993	6	NNC	ENSMUSG00000024944.7	novel	1286	5	NA	NA	-799	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	290.357297135788	6773	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATAAAGCACTCTTCACC	NA	False	NA	NA	False	NA	NA	NA	6192377	6184437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066_6191137_6192203
84006	chr10	+	946	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	3	312	3	-53	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	176	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACCCAACCTATCCCAA	NA	False	NA	NA	False	NA	NA	NA	79540327	79547491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
84007	chr11	-	1321	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	-163	-1	-34	1	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	384	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGATGTATGTGACAAT	NA	False	NA	NA	False	NA	NA	NA	33113240	33104925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
84008	chrX	+	920	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	28	4224	28	-4224	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	15415	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTAAGCCCTGCCTT	5375	False	NA	NA	False	NA	NA	NA	158155201	158168700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
84009	chr5	+	942	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	275	-12	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	168	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121342596	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
84010	chr4	+	2250	11	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	-1315	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	967.88098958498	15788	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTGTGCTTATAAGAGG	NA	False	NA	NA	False	NA	NA	NA	118476680	118484955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118476792_118478070_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016_118483258_118483985
84011	chr10	+	555	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	43	5	43	-5	multi-exon	FALSE	canonical	3	3631	junction_2	117.5	100	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGAATTGTGTCCTTA	NA	False	NA	NA	False	NA	NA	NA	78261545	78263451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_78261692_78262760_78262863_78263144
84012	chr8	-	1348	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	1	5	1	-5	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	14844	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAATTGTTCATCTGACTT	NA	False	NA	NA	False	NA	NA	NA	23083773	23067106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
84013	chr11	-	2602	11	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	64	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	357.270835641534	3	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTACACTCCTCATATT	NA	False	NA	NA	False	NA	NA	NA	60702027	60678936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692765_60692858_60695088_60695235_60697771_60697869_60701729
84014	chr1	+	1422	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-15	-189	-15	189	mono-exon	FALSE	NA	NA	NA	NA	NA	50014	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACCGTGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	60743075	60744497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743100_60744500
84015	chr3	-	1129	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	836	6	1	-2	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	36574	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAATTTATAAGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	105866579	105850019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
84016	chr6	-	2003	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	69	13	16	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	34288	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294519	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
84017	chr6	+	3537	10	Fusion	ENSMUSG00000009145.7_ENSMUSG00000068328.11	novel	3257	12	NA	NA	-82	-289	intron_retention	FALSE	canonical	0	0	junction_4	3.49955905511636	15178	71	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	522	False	NA	88	True	NA	NA	NA	83034742	83044010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_+_83036092_83036419_83036808_83037148_83037383_83037471_83037572_83037661_83037837_83037916_83038109_83041504_83041625_83041774_83041966_83043070_83043262_83043413
84018	chr16	-	3542	9	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	2245	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	396.999685138414	17037	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	8740	False	NA	NA	False	NA	NA	NA	22253019	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22252935
84019	chr5	+	1462	4	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4729	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACGTAAAGCGCTTGC	2761	False	NA	NA	False	NA	NA	NA	117420459	117425653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117421529_117423783_117423886_117424198_117424312_117425475
84020	chr16	-	3859	13	FSM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	112	4	9	3	multi-exon	FALSE	canonical	3	174	junction_9	424.638105724549	21176	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	7598	False	NA	NA	False	NA	NA	NA	22258357	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769_22254818_22254950_22255039_22255187_22255311_22258266
84021	chr12	+	1631	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-590	251	-10	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	68	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAATAACTCCATGTTC	NA	False	NA	NA	False	NA	NA	NA	72132881	72148225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
84022	chr10	-	2713	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	58	959	-13	-959	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	116	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845583	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
84023	chrM	+	5212	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-287	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	573	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	2	True	NA	NA	False	NA	NA	NA	9879	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84024	chr12	+	906	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	23	212	-2	-212	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	16436	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	NA	False	NA	NA	NA	21366412	21373608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
84025	chr2	+	551	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	-35	-33	-35	33	mono-exon	FALSE	NA	NA	NA	NA	NA	258	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	24875960	24876511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_24876000_24876500
84026	chr13	+	894	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	56	-12	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	67	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAAATAAAGCTTTTTG	7950	False	NA	NA	False	NA	NA	NA	74554515	74555409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
84027	chr16	-	2123	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1204	-3	695	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	317	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
84028	chr11	+	1098	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	212	12	-112	-12	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCAGAAACGCCTGATG	4169	False	NA	NA	False	NA	NA	NA	100210922	100212910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
84030	chr10	-	1136	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	364	-17	364	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	1	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959453	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
84031	chr6	-	2023	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	49	13	-4	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	975	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294539	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
84033	chr6	-	1765	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	38	282	-15	-282	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	105498	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTTTTCTTTGGCGGG	NA	False	NA	NA	False	NA	NA	NA	83294550	83282954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
84034	chr7	+	706	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	10243	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1309	False	NA	NA	False	NA	NA	NA	3707036	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
84035	chr16	+	6385	1	FSM	ENSMUSG00000083405.2	ENSMUST00000119947.2	1090	1	-69	-5226	-69	5226	mono-exon	FALSE	NA	NA	NA	NA	NA	1069	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTCTTGGTCCGGTCA	NA	False	NA	NA	False	NA	NA	NA	37702834	37709219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_37702800_37709200
84036	chr2	-	1939	2	Genic_Genomic	ENSMUSG00000082029.2	novel	411	1	NA	NA	-4011	510	multi-exon	FALSE	canonical	0	0	junction_1	0	31	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAGAAGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	119500528	119495596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_119496646_119499638
84037	chr16	-	3170	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24752	-3	-9933	3	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	17297	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	NA	False	NA	NA	False	NA	NA	NA	22230512	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
84038	chr7	-	2219	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	-57	9	-57	-9	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	516	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTCTCACTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	117728942	117718122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
84039	chr4	+	1537	12	NNC	ENSMUSG00000028318.15	novel	2986	12	NA	NA	-11	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	53.1436537498533	1385	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCATCTCCCTCCTTTC	3	True	NA	NA	False	NA	NA	NA	45018650	45032358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_45018746_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
84040	chr6	-	2012	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	60	13	7	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	493	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294528	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
84041	chrX	-	1078	8	NNC	ENSMUSG00000031320.10	novel	975	7	NA	NA	-1917	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5653.19430381927	5427	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101234917	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903_101232918_101234730
84042	chr2	-	6123	20	NNC	ENSMUSG00000027288.17	novel	9085	22	NA	NA	9	-590	intron_retention	FALSE	canonical	0	0	junction_11	312.375173961503	15	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATATTGTAAAGTGGGG	9830	False	NA	NA	False	NA	NA	NA	120394279	120337890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354341_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120376323_120376386_120385711_120385797_120394167
84043	chr7	-	1382	6	ISM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	-1	1396	-1	-1262	5prime_fragment	FALSE	canonical	3	638	junction_1	64.5371211009602	32	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTTTGCTAATTATTAA	5731	False	NA	NA	False	NA	NA	NA	33896087	33885319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
84044	chrX	-	788	3	Antisense	novelGene_ENSMUSG00000047844.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGAGGGCAGGTCCGAGAC	NA	False	NA	NA	False	NA	NA	NA	135041192	135039793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_135039912_135040267_135040347_135040601
84045	chr13	-	5192	5	Antisense	novelGene_ENSMUSG00000113690.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	344	85	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGTAAAAATAAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	62400454	62254978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62255628_62255696_62257592_62352448_62352773_62397919_62399909_62400119
84046	chr2	-	1292	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	75	-206	6	206	multi-exon	TRUE	canonical	3	3295	junction_4	264.518850409989	3658	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTAAAAGTGAAAATGCTC	NA	False	NA	NA	False	NA	NA	NA	130021248	130013348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
84047	chr7	+	1045	2	Genic_Genomic	ENSMUSG00000107470.3	novel	795	1	NA	NA	-13	451	multi-exon	TRUE	non_canonical	0	0	junction_1	0	23229	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAATTCATGTTGCGTTG	NA	False	NA	NA	False	NA	NA	NA	3230828	3232087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_3231700_3231913
84048	chr6	+	2165	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	46	0	46	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	1097	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684572	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
84049	chr10	+	856	6	Genic_Genomic	ENSMUSG00000097372.2	novel	2387	2	NA	NA	-21347	10634	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3052	28	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCCGCCAGCCTGGTAAA	657	False	NA	NA	False	NA	NA	NA	128460405	128496314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_128460505_128461074_128461207_128461931_128462108_128462343_128462359_128484270_128484504_128496113
84050	chr11	-	2015	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139378.2	773	3	-24	-1218	7	-330	multi-exon	FALSE	canonical	3	13934	junction_1	171	332	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915323	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707
84051	chr5	-	731	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	181	3	-16	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	873	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2245	False	NA	NA	False	NA	NA	NA	129916130	129909999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
84052	chr5	+	2105	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	23	-858	-17	858	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	1578	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTCTTCCAACAACACTG	NA	False	NA	NA	False	NA	NA	NA	121342566	121348162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
84053	chr9	-	1019	2	Genic_Genomic	ENSMUSG00000082465.2	novel	750	1	NA	NA	-1901	60	multi-exon	FALSE	non_canonical	0	0	junction_1	0	499	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAACAAACA	6864	False	NA	NA	False	NA	NA	NA	53603484	53600773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_53601611_53603302
84054	chrM	-	2918	1	Antisense	novelGene_ENSMUSG00000064360.1_AS_novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000064361.1_AS_novelGene_ENSMUSG00000065947.1_AS_novelGene_ENSMUSG00000064358.1_AS_novelGene_ENSMUSG00000064359.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25516	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGAGTTTGGTGGGTCAT	-66	True	NA	NA	False	NA	NA	NA	11544	8626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_8600_11500
84055	chr4	-	788	2	ISM	ENSMUSG00000028896.14	ENSMUST00000155129.2	507	6	-28	14125	-28	-12457	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	1073	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATTTGAATGTCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	132080944	132079258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132080010_132080907
84056	chr8	+	1849	6	NNC	ENSMUSG00000008450.9	novel	948	5	NA	NA	-10	1072	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1423.32970179084	14153	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGGTCTCTTTATTCCTA	NA	False	NA	NA	False	NA	NA	NA	106587286	106607034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436_106606521_106606616
84057	chr8	+	3001	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	71	-1075	71	1075	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	83	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAAGAAGCTTTAAGGTA	NA	False	NA	NA	False	NA	NA	NA	27750427	27767777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_27750579_27763350_27763531_27765107
84058	chr6	-	2023	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	49	13	-4	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	714	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294539	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
84059	chrX	-	2932	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	-94	10	-94	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	3344	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921503	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
84060	chr14	-	1060	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	66	47	-4	9	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAGGGTGAAAACAG	NA	False	NA	NA	False	NA	NA	NA	31923789	31902165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
84061	chrM	-	3505	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-2118	-868	-2118	868	mono-exon	FALSE	NA	NA	NA	NA	NA	58899	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATCAGGCCTAGTTGGC	0	True	NA	-246	True	NA	NA	NA	16188	12683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12700_16200
84062	chr6	+	3490	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	952	1306	at_least_one_novel_splicesite	FALSE	canonical	3	602	junction_1	2063.97825139274	2737	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAAGTCTTAATAGTATA	4740	False	NA	NA	False	NA	NA	NA	117884761	117903889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117884841_117894430_117894560_117896059_117896121_117900668
84063	chr11	-	477	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	13	147	13	-94	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	2266	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTCCTTCTGATGAATGT	NA	False	NA	NA	False	NA	NA	NA	29497847	29495992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
84064	chr9	-	753	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	29	-14	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	299	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
84065	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	615	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
84066	chr5	-	1508	4	Genic_Genomic	ENSMUSG00000057244.7	novel	882	1	NA	NA	-139157	1264	multi-exon	FALSE	non_canonical	0	0	junction_1	0	676655	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGCAACTATAAAATCTAT	NA	False	NA	NA	False	NA	NA	NA	129840092	129698789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_129698991_129700023_129700979_129782540_129782704_129839903
84067	chr17	-	1253	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	45	639	45	-1	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	4193	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTAGTTGTTTAGCGTT	1972	False	NA	NA	False	NA	NA	NA	71309504	71301289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
84068	chr3	+	2381	7	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	1169	1343	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2214.19627379528	32	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGGGCTGGGGCGATC	1067	False	NA	NA	False	NA	NA	NA	88484424	88497069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88485660_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495706_88496882
84069	chr9	+	755	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	29	225	29	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	26751	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400538	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
84070	chr2	+	748	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	-26	7	-6	-7	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	220	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTGAATGGGCTTGGCT	5796	False	NA	NA	False	NA	NA	NA	32851725	32854048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
84071	chr12	-	3771	10	NNC	ENSMUSG00000021131.15	novel	506	5	NA	NA	-34006	1326	intron_retention	FALSE	non_canonical	0	0	junction_1	4092.82849764208	32841	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTATAGCCATGTCCTC	NA	False	NA	NA	False	NA	NA	NA	80725121	80679469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_80679651_80680814_80681302_80684263_80684385_80687730_80687819_80690537_80691749_80709241_80709352_80713307_80713509_80719998_80720067_80722620_80722707_80723903
84072	chr5	-	1203	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	40	-3	-2	3	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	1227	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGGGTATTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	117425650	117420715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
84073	chr16	-	3542	9	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	2245	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	396.999685138414	16426	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	8740	False	NA	NA	False	NA	NA	NA	22253019	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22252935
84074	chr2	+	942	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	127	881	127	-21	multi-exon	TRUE	canonical	3	2160	junction_3	102.069780052668	242	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGATATGATTTTACATAA	NA	False	NA	NA	False	NA	NA	NA	125089528	125099647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
84075	chr6	-	2011	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	65	9	-65	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	26876	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGGGTTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
84076	chr9	+	870	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-27	-45	-27	45	mono-exon	FALSE	NA	NA	NA	NA	NA	25357	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	84306009	84306879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
84077	chrM	+	4502	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-3124	0	-3124	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	4	True	NA	NA	False	NA	NA	NA	7042	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7000_11500
84078	chr5	+	1088	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	222	-22	-222	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	76	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTAAAACTCCGGTCTG	NA	False	NA	NA	False	NA	NA	NA	115697573	115701564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
84079	chrM	-	4508	1	Antisense	novelGene_ENSMUSG00000064360.1_AS_novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000064361.1_AS_novelGene_ENSMUSG00000064355.1_AS_novelGene_ENSMUSG00000065947.1_AS_novelGene_ENSMUSG00000064358.1_AS_novelGene_ENSMUSG00000064354.1_AS_novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS_novelGene_ENSMUSG00000064359.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTTGGAATGGGTAGGC	-65	True	NA	NA	False	NA	NA	NA	11543	7035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7000_11500
84080	chr2	-	710	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	58	0	-5	0	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	114	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	32178022	32168827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
84081	chr15	-	972	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	57	1283	-1	0	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	864	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	NA	False	NA	NA	NA	75781147	75767336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
84083	chr6	+	3579	4	FSM	ENSMUSG00000042079.14	ENSMUST00000167182.8	2271	4	-4	-1304	-4	1303	multi-exon	TRUE	canonical	3	103	junction_1	2299.04709728956	129	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTGAAAGTCTTAATAGT	NA	False	NA	NA	False	NA	NA	NA	117877296	117903886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117877468_117894430_117894560_117896059_117896121_117900668
84084	chr4	-	3620	4	Genic_Genomic	ENSMUSG00000096065.2_ENSMUSG00000080059.5	novel	646	1	NA	NA	-41	245373	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18336	42	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAGTGTTTTTTATATTT	4072	False	NA	NA	False	NA	NA	NA	147906700	147463323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_147464350_147707211_147709294_147750341_147750350_147906196
84085	chr2	-	1073	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	75	13	6	-13	multi-exon	FALSE	canonical	3	3295	junction_4	264.518850409989	13010	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATACAGTTGATATATTC	NA	False	NA	NA	False	NA	NA	NA	130021248	130013567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
84086	chr11	+	1947	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	94	443	-13	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	31754	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940612	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
84087	chr3	+	1925	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	689.435941302572	12207	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3856	False	NA	NA	False	NA	NA	NA	88204474	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228747
84088	chr6	+	866	8	NNC	ENSMUSG00000029911.15	novel	933	7	NA	NA	2	14022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1186.34466891767	645	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCATTCATTTTAGCC	NA	False	NA	NA	False	NA	NA	NA	40448388	40475656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786_40457827_40475643
84089	chr15	+	3667	14	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	8199	0	-4052	0	3prime_fragment	FALSE	canonical	3	745	junction_2	66.2960903646145	44335	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	101990406	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
84090	chr11	-	2101	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	-127	19	-117	-19	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	80	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGGGGAAACAGTTTC	NA	False	NA	NA	False	NA	NA	NA	115915457	115912805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
84091	chr15	+	3645	14	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	8199	22	-4052	-22	3prime_fragment	FALSE	canonical	3	745	junction_2	66.2960903646145	75	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCCAGTCTTTAAAGTT	NA	False	NA	NA	False	NA	NA	NA	101990406	102005586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
84092	chr15	-	2095	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	21	-39	2	39	multi-exon	FALSE	canonical	3	3045	junction_2	110	48539	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGCTCAGTGCCATG	4927	False	NA	NA	False	NA	NA	NA	81931778	81924686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81926570_81928097_81928219_81931687
84093	chr15	+	876	6	Antisense	novelGene_ENSMUSG00000068101.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	163	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCTAGTGGGCGGGGC	NA	False	NA	NA	False	NA	NA	NA	82118296	82128940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_82118708_82123490_82123585_82124078_82124160_82125527_82125621_82128333_82128414_82128823
84094	chr2	+	1833	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	-14	-123	-14	123	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	29	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTATATTATATATGTTA	NA	False	NA	NA	False	NA	NA	NA	31360204	31410807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
84095	chr16	-	3683	10	ISM	ENSMUSG00000013089.16	ENSMUST00000079601.13	3975	13	3526	4	321	3	3prime_fragment	FALSE	canonical	3	174	junction_9	393.897273065447	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	6816	False	NA	NA	False	NA	NA	NA	22254943	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382_22230671_22231594_22231725_22254626_22254678_22254769
84096	chr10	-	1323	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	72	217	16	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	306	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959849	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
84097	chrX	+	1953	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	12	0	12	0	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	16248	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	NA	False	NA	NA	NA	139357373	139376889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
84098	chrM	-	1235	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1161	-5	1161	mono-exon	FALSE	NA	NA	NA	NA	NA	907	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCATCCTGTTCCTGCTC	9245	False	NA	NA	False	NA	NA	NA	6943	5708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5700_6900
84099	chr2	+	2274	11	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	6514	-736	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	13251	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACAGTACTACTTCCTCC	7679	False	NA	NA	False	NA	NA	NA	104829048	104847460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104830183_104830579_104830648_104831615_104831759_104835268_104835352_104836125_104836230_104837103_104837185_104843195_104843286_104843537_104843666_104844088_104844229_104845114_104845247_104847289
84100	chrM	+	3140	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	210	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	399	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	206	False	NA	4	True	NA	NA	NA	11951	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84101	chr10	-	1209	8	NNC	ENSMUSG00000004667.19	novel	1148	7	NA	NA	-871	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1002.78752302097	33	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATACTTTGATAAGTTACT	4644	False	NA	NA	False	NA	NA	NA	79876500	79871800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416_79875537_79876328
84102	chrX	+	997	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	175	6	175	-6	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	48	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTACAGTTGTTTCACGT	NA	False	NA	NA	False	NA	NA	NA	138234606	138238912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_138235157_138237570_138237800_138238694
84103	chr13	-	5580	17	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-7805	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	2846.62473378561	293	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	58558962	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206_58550601_58554812_58554903_58555721
84104	chr1	-	1209	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	687	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACGCGGCGCCAGAAGC	9057	False	NA	NA	False	NA	NA	NA	86458422	86454442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
84105	chrX	-	1270	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	-116	3	-116	-3	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	31	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537745	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
84106	chr17	-	1327	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	-127	5	-127	-5	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	12	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAATTGTTGCTCTGAATC	NA	False	NA	NA	False	NA	NA	NA	87754490	87740844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
84107	chr8	-	1259	6	ISM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	18	4153	2	-2500	5prime_fragment	FALSE	canonical	3	55	junction_3	5.2	2068	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1082	False	NA	NA	False	NA	NA	NA	120331943	120328866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
84108	chr16	-	3187	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24735	-3	-9950	3	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	7869	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	NA	False	NA	NA	False	NA	NA	NA	22230529	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
84109	chr2	+	1461	15	NIC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	95	-8	combination_of_known_splicesites	FALSE	canonical	3	195	junction_12	721.33651817233	25	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31404690_31404848_31408737_31408804_31410383
84110	chr11	+	1235	7	NNC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	0	2588	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1909.92324598544	152550	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGACCTGGGGGTTGAAC	439	False	NA	NA	False	NA	NA	NA	52122863	52140273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811_52137492_52140256
84111	chr4	-	3555	1	FSM	ENSMUSG00000065353.3	ENSMUST00000083419.3	205	1	-1107	-2243	-1107	2243	mono-exon	FALSE	NA	NA	NA	NA	NA	562	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTGAACCTGGATCCC	NA	False	NA	NA	False	NA	NA	NA	132080944	132077389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132077400_132080900
84112	chr5	-	1883	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	8	0	-8	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	1093	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84113	chr17	+	1054	6	FSM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	-57	1	-57	0	multi-exon	FALSE	canonical	3	3280	junction_1	2855.80020309545	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGTTTTTTTTTGTCT	6133	False	NA	NA	False	NA	NA	NA	24938979	24940899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
84114	chr13	-	4058	15	FSM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	29	-1481	-3	1481	multi-exon	FALSE	canonical	3	146	junction_11	13.0690864412232	2266	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGCCTCTGTGTTGTAGG	1858	False	NA	NA	False	NA	NA	NA	53531404	53485302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531328
84115	chr2	+	1699	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	-974	236	-704	0	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	15111	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGGCTCTTATATTGTGT	NA	False	NA	NA	False	NA	NA	NA	121286469	121288917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
84116	chr17	-	1099	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	-140	2	3	0	multi-exon	FALSE	canonical	3	826	junction_1	47.9780042195264	7348	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGCTGTCTCCTACTGT	NA	False	NA	NA	False	NA	NA	NA	35340402	35335175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
84117	chr14	+	7299	12	NNC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	-1	19553	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1311.44046096063	4556	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGCGTCTCTCGCGAGA	NA	False	NA	NA	False	NA	NA	NA	58035673	58063648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378_58044988_58045430_58045536_58047399_58047598_58049033_58049123_58054101_58054209_58057610_58058019_58059491_58059657_58060354_58060420_58063466
84118	chrX	-	810	3	Antisense	novelGene_ENSMUSG00000046432.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	603	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTGCGTCGCTCTG	4939	False	NA	NA	False	NA	NA	NA	135172663	135171065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_135171148_135171555_135171630_135172009
84119	chr7	+	3927	3	Antisense	novelGene_ENSMUSG00000030879.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3993	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGTGTGTGCGCGCGCG	NA	False	NA	NA	False	NA	NA	NA	105455714	105460235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105459351_105459655_105459728_105460016
84120	chrM	+	1572	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	15	-5	15	5	mono-exon	FALSE	NA	NA	NA	NA	NA	50967	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGGCAGAGCCAGGAAATT	12	False	NA	37	True	NA	NA	NA	1108	2680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2700
84121	chr17	-	2085	14	NNC	ENSMUSG00000072082.8	novel	1721	12	NA	NA	6	35287	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	234.220752596233	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTATCATCGGGCATGGT	8681	False	NA	NA	False	NA	NA	NA	24470377	24405884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24406019_24448918_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
84122	chr9	+	870	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-27	-45	-27	45	mono-exon	FALSE	NA	NA	NA	NA	NA	4814	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	84306009	84306879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
84123	chr14	+	1333	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	41	13	-10	-13	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	7081	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGTTTAATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8348819	8357576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
84124	chr2	-	5100	27	NNC	ENSMUSG00000027170.13	novel	1283	11	NA	NA	238	113329	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1055.60854669056	83	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCACTTCCGGGTCATC	2915	False	NA	NA	False	NA	NA	NA	104847150	104716671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_104716836_104737882_104738043_104745001_104745073_104757246_104757318_104759864_104759908_104761321_104761393_104781849_104781986_104782211_104782291_104803508_104803640_104804201_104804261_104805898_104806003_104811331_104811446_104815318_104815451_104820209_104820395_104821422_104822894_104824809_104824948_104829307_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847020
84125	chrM	+	1621	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-836	-1	-836	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6205	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-6	True	NA	NA	False	NA	NA	NA	7770	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9400
84126	chr4	-	1152	10	ISM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	49	14	0	-14	intron_retention	FALSE	canonical	3	1341	junction_3	45.5241083871441	192	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6426	False	NA	NA	False	NA	NA	NA	129494392	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201
84127	chr12	+	1631	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-590	251	-10	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	382	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAATAACTCCATGTTC	NA	False	NA	NA	False	NA	NA	NA	72132881	72148225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
84128	chr14	-	879	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	18	2	4	0	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	863	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTGGAGTCCACAGTTA	8642	False	NA	NA	False	NA	NA	NA	54855461	54851577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54851939_54853971_54854279_54855250
84129	chr3	+	568	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	421	183	-47	1	multi-exon	FALSE	canonical	3	1428	junction_1	178.055293378209	8841	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7544	False	NA	NA	False	NA	NA	NA	89153693	89157030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
84130	chr7	+	1529	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	-823	0	823	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	194092	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTGGTGTTGAATTCT	1309	False	NA	NA	False	NA	NA	NA	3707036	3710719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
84131	chr17	-	1229	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	-29	5	-29	-5	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAATTGTTGCTCTGAATC	NA	False	NA	NA	False	NA	NA	NA	87754392	87740844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
84132	chr7	+	3927	3	Antisense	novelGene_ENSMUSG00000030879.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9061	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGTGTGTGCGCGCGCG	NA	False	NA	NA	False	NA	NA	NA	105455714	105460235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_105459351_105459655_105459728_105460016
84133	chr6	+	877	1	FSM	ENSMUSG00000081669.2	ENSMUST00000119728.2	528	1	-19	-330	-19	330	mono-exon	FALSE	NA	NA	NA	NA	NA	23	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85053154	85054031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85053200_85054000
84134	chr16	-	5122	32	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-2	28350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2428.40430515654	228	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAACGCGGCATTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	87292749	87251863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255629_87258850_87259026_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87269057_87269994_87270072_87271467_87271562_87272304_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
84135	chr8	+	875	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	75	-2	-10	2	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	16273	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAGTTTAAATTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	106587286	106605964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
84136	chr9	-	2040	4	FSM	ENSMUSG00000074476.7	ENSMUST00000214149.2	356	4	5	-1689	5	-8	multi-exon	FALSE	canonical	3	158	junction_3	1018.23518348606	501	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTTTTTAAAAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	21671593	21666745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21668490_21668585_21668691_21668980_21669126_21671547
84137	chrX	-	955	3	Genic_Genomic	ENSMUSG00000096763.2_ENSMUSG00000095499.2	novel	399	1	NA	NA	-81	19692	multi-exon	FALSE	non_canonical	0	0	junction_1	0	671	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACACTTTGCTTATTTGC	NA	False	NA	NA	False	NA	NA	NA	124765785	124562763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_124562771_124582420_124582859_124765275
84138	chr13	-	3464	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	1	632	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	2820	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTTGTGTGTCTGTTGG	4766	False	NA	NA	False	NA	NA	NA	58550315	58538323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
84139	chr4	+	3406	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	58	-2329	58	2329	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	49149	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTTAAGAATTTGATACA	NA	False	NA	NA	False	NA	NA	NA	63463066	63471316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
84140	chr7	+	708	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	-2	0	2	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	546	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTGTGCCTCTGTAGT	1309	False	NA	NA	False	NA	NA	NA	3707036	3709898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
84141	chr12	-	670	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	59	225	-16	4	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	722	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGTAGTAACTTGTCAAAA	NA	False	NA	NA	False	NA	NA	NA	28685893	28681077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
84142	chr2	+	10961	8	Genic_Genomic	ENSMUSG00000078864.11_ENSMUSG00000078866.11	novel	744	6	NA	NA	3429	145409	multi-exon	TRUE	non_canonical	0	0	junction_1	0	78	238	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAGAACAATTAGACAACA	NA	False	NA	NA	False	NA	NA	NA	177160067	177557674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_177160387_177164953_177165246_177255980_177255992_177410013_177410663_177410897_177418745_177437549_177438442_177503491_177503497_177556728
84143	chr15	-	2082	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	34	-39	15	39	multi-exon	FALSE	canonical	3	3045	junction_2	110	20	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGCTCAGTGCCATG	4940	False	NA	NA	False	NA	NA	NA	81931765	81924686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81926570_81928097_81928219_81931687
84144	chr10	+	1161	4	Antisense	novelGene_ENSMUSG00000019797.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4260	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCCGACCGCAGGCGGG	NA	False	NA	NA	False	NA	NA	NA	43400826	43416963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_43401401_43406589_43406667_43408671_43409162_43416943
84145	chrM	+	1157	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	459	-71	459	71	mono-exon	FALSE	NA	NA	NA	NA	NA	51114	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	9	True	NA	97	True	NA	NA	NA	5786	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
84146	SIRV5	+	4214	18	FSM	SIRV5A	SIRV510	2474	18	-1	-1739	0	0	multi-exon	FALSE	canonical	3	1532	junction_17	2924.81329602575	11954	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
84147	chr6	-	1469	7	FSM	ENSMUSG00000023456.17	ENSMUST00000172132.10	1607	7	138	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_3	39.1652482012647	15030	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTTGTCCCAGGCTGCC	NA	False	NA	NA	False	NA	NA	NA	124791121	124787548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124788351_124788479_124788568_124788844_124788931_124789366_124789500_124789583_124789669_124789752_124789877_124790970
84148	chrM	+	916	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	41	0	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	3005	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTACCAATTTTTACAGCG	-2	True	NA	109	True	NA	NA	NA	2750	3666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
84149	chr7	-	1214	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	160	773	-7	2	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	5334	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCACTTCTCGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	44635756	44626185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
84150	chr6	+	2498	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	-57	0	-57	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	175	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	4553	False	NA	NA	False	NA	NA	NA	85428438	85445457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
84151	chr6	+	3624	6	NNC	ENSMUSG00000029911.15	novel	1188	6	NA	NA	-2	14022	intron_retention	FALSE	non_canonical	0	0	junction_5	1067.07450536502	24356	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCATTCATTTTAGCC	NA	False	NA	NA	False	NA	NA	NA	40448406	40475656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786_40457827_40475643
84152	chr2	+	345	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	40	9	-1	-6	multi-exon	FALSE	canonical	3	3954	junction_5	1417.02976680097	518	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTAAGTCTGCTTTTGC	NA	False	NA	NA	False	NA	NA	NA	179899209	179900229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
84153	chr7	-	1017	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	5	0	-5	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	37790	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
84154	chr12	-	971	5	Fusion	ENSMUSG00000049751.7_ENSMUSG00000034892.9	novel	390	3	NA	NA	-12	0	multi-exon	FALSE	non_canonical	0	0	junction_3	11655.4205844319	43	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	69230799	69204495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_69204596_69205434_69205535_69205770_69206062_69229502_69229940_69230756
84155	chr7	+	1220	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	9	0	9	0	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	2000	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3849	False	NA	NA	False	NA	NA	NA	140972120	140982881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
84156	chr4	+	1877	1	FSM	ENSMUSG00000059195.11	ENSMUST00000121430.2	1128	1	-46	-703	-46	703	mono-exon	FALSE	NA	NA	NA	NA	NA	645	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103420552	103422429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_103420600_103422400
84157	chr4	-	1088	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	21	14	-11	-14	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	2367	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6398	False	NA	NA	False	NA	NA	NA	129494420	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
84158	chr10	+	1812	8	ISM	ENSMUSG00000004207.15	ENSMUST00000165878.2	2564	14	11448	-1	11448	1	3prime_fragment	FALSE	canonical	3	931	junction_1	87.6689040349763	179	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	2052	False	NA	NA	False	NA	NA	NA	60131730	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
84159	chr11	+	1522	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	0	382	0	58	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	4	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGGTGTATATGTTGTT	NA	False	NA	NA	False	NA	NA	NA	107370309	107388617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
84160	SIRV5	+	4088	18	NNC	SIRV5A	novel	2474	18	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	3880.45933499103	86	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1029	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7370_7870_8017_8277_8382_8454_8586_10858_10992_11133_12935_13039
84161	chr9	-	1173	7	Fusion	ENSMUSG00000032346.8_ENSMUSG00000060461.6	novel	2138	3	NA	NA	45	-6	multi-exon	FALSE	canonical	1	3	junction_4	84259.819715403	73	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAATGTGCGTCGTCATT	NA	False	NA	NA	False	NA	NA	NA	78285962	78274339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_78274577_78275002_78275186_78275266_78275383_78277827_78277889_78284907_78284974_78285256_78285440_78285635
84162	chr16	-	2504	4	NIC	ENSMUSG00000005732.15	novel	1085	6	NA	NA	-20	0	intron_retention	FALSE	canonical	3	10558	junction_2	1748.19837420001	48	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	7199	False	NA	NA	False	NA	NA	NA	18066530	18057647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18059738_18063064_18063223_18065152_18065290_18066411
84163	chr11	-	2064	12	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	85	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	334.691519496895	13	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	NA	False	NA	NA	NA	60702006	60678929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60679434_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
84164	chr10	+	1314	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	103	636	21	-13	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	208	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGTCTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	126899505	126903153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
84165	chr4	+	5387	6	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	100	2585	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	53.6566864426047	12542	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATCAACAAATGTAAA	NA	False	NA	NA	False	NA	NA	NA	147216594	147267621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147216818_147219028_147219122_147249797_147249844_147260303_147260362_147261203_147261331_147262781
84166	chr7	-	5817	1	Intergenic	novelGene_2936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	92	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAATTTGTCTTAACTCC	NA	False	NA	NA	False	NA	NA	NA	42452568	42446751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_42446800_42452600
84167	chr17	-	6439	17	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-32	3778	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	176.373183902769	1887	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCCCCCCAACCCCCAA	2348	False	NA	NA	False	NA	NA	NA	45744499	45699031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45700093_45700294_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
84168	chr6	+	789	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	154	0	100	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256307	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256300_148257100
84169	chr4	+	5387	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	58	42994	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	84.2368090563739	118	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	146206999	146257998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
84170	chr17	-	4238	28	NNC	ENSMUSG00000024251.11	novel	2397	11	NA	NA	-5	-64662	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.9804127794125	572	49	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTCTTGGGGAATAAT	NA	False	NA	NA	False	NA	NA	NA	84773638	84681715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_84681723_84688464_84688703_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759314_84762027_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771930_84773521
84171	chrM	+	2866	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-1488	0	-1488	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45038	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	60	False	NA	NA	False	NA	NA	NA	8678	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_8700_11500
84172	chr18	-	1914	11	Antisense	novelGene_ENSMUSG00000025428.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCTAGTACAAAAACATTC	NA	False	NA	NA	False	NA	NA	NA	77870395	77863479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77863553_77865215_77865387_77866159_77866334_77866429_77866598_77866777_77866931_77867527_77867677_77867776_77868002_77868682_77868790_77868908_77869057_77869498_77869648_77869998
84173	chr6	+	2210	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	-1267	0	1267	mono-exon	FALSE	NA	NA	NA	NA	NA	217	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAGGTCATTAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	148256153	148258363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148258400
84174	chr3	-	915	5	Antisense	novelGene_ENSMUSG00000037894.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTCAGCGAGATCCCAGC	NA	False	NA	NA	False	NA	NA	NA	137572683	137570403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_137570457_137570892_137570970_137571278_137571399_137571775_137571913_137572155
84175	chr5	-	1863	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	28	0	-28	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	16077	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGCACACCTTACCTTA	8918	False	NA	NA	False	NA	NA	NA	142892480	142888897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84176	chr11	+	4845	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	107	-2468	0	2468	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	180	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATAAAATCTACAAGATCC	NA	False	NA	NA	False	NA	NA	NA	22940625	22956248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
84177	chr6	-	1748	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	55	282	2	-282	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	31362	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTTTTCTTTGGCGGG	NA	False	NA	NA	False	NA	NA	NA	83294533	83282954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
84178	chrM	-	1353	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1279	-5	1279	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGATTATTAGTGGGACAAG	9245	False	NA	NA	False	NA	NA	NA	6943	5590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5600_6900
84179	chr6	-	2819	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3588.65398722139	150	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8919	False	NA	NA	False	NA	NA	NA	122719475	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712412_122719413
84180	chr4	-	1088	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	21	14	-11	-14	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	271	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6398	False	NA	NA	False	NA	NA	NA	129494420	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
84181	chr3	+	515	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	474	183	6	1	multi-exon	FALSE	canonical	3	1428	junction_1	178.055293378209	6078	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTCTGTGAACTGTGA	7597	False	NA	NA	False	NA	NA	NA	89153746	89157030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
84182	chr4	-	2599	5	NNC	ENSMUSG00000028234.7	novel	3706	4	NA	NA	66	-250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3427.51458786101	7122	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCCACTTGGATGTGTA	-1	True	NA	NA	False	NA	NA	NA	3835599	3831583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_3832807_3833597_3834684_3834935_3835010_3835191_3835292_3835483
84183	chr6	+	2221	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-74	0	-69	0	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	86	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3660	False	NA	NA	False	NA	NA	NA	117883681	117902580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
84184	SIRV5	+	4238	18	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3721.71395943425	492	28	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1152_1992_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6975_7134_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
84185	chr5	+	1889	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	950	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889693_142889816_142890003_142890098_142890540_142890993_142891234_142891320_142891448_142892406
84186	chr14	+	1223	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-182	-705	-182	705	mono-exon	FALSE	NA	NA	NA	NA	NA	85	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669255	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
84187	chr1	-	1637	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	-93	554	-93	-554	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	24	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7203	False	NA	NA	False	NA	NA	NA	160040538	160030490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
84188	chr13	-	9761	12	NNC	ENSMUSG00000097483.3	novel	1519	4	NA	NA	-61903	-16559	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	110	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACCTGACAGCAGATCTC	NA	False	NA	NA	False	NA	NA	NA	66729854	66667788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66667826_66670582_66670738_66671328_66671440_66674047_66674178_66674375_66674437_66676616_66677129_66677212_66678804_66711977_66712078_66720975_66721110_66721306_66721374_66722513_66728366_66728843
84189	chr11	-	2326	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	39	1194	1	-1	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	571	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9655	False	NA	NA	False	NA	NA	NA	106679319	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
84190	chr6	+	1977	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	227	7	227	-7	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	140	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTAGTGGTCTTATCTT	NA	False	NA	NA	False	NA	NA	NA	122684753	122691585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
84191	SIRV6	+	1478	10	FSM	SIRV6A	SIRV612	1528	10	50	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1137	11825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
84192	chrM	+	2499	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36226	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3309_3426
84193	chr4	-	2316	20	NNC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	6	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	166.485040463283	125	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	NA	False	NA	NA	False	NA	NA	NA	34614938	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598785_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
84194	SIRV5	+	2075	15	NIC	SIRV5A	novel	2029	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	5578	junction_10	2034.0045200921	3583	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1027	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8586_10858
84195	SIRV5	+	4020	17	NNC	SIRV5A	novel	1890	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3912.11329109265	11325	49	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_2206_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6323_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10932_11147_12935_13039
84196	chr2	-	1338	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	4	-26	4	26	mono-exon	FALSE	NA	NA	NA	NA	NA	112	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAATGGGTTCTTTGGGG	7164	False	NA	NA	False	NA	NA	NA	113751482	113750144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_113750100_113751500
84197	chr5	-	1422	7	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	-10013	78862	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3727.16463578177	24	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTTCTCTCCTCACCT	NA	False	NA	NA	False	NA	NA	NA	149000336	148904649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148904657_148985037_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709_148989817_149000199
84198	chr7	-	1028	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	0	-9	0	9	mono-exon	FALSE	NA	NA	NA	NA	NA	14215	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	114305470	114304442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114304400_114305500
84199	chr5	+	1739	8	NNC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	-939	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	2152.40005575172	119	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582044	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104582252_104582861_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
84200	SIRV5	+	2553	17	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	3665.87414541198	2787	53	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	1027	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7876_8382_8454_8586_10858_10992_11311
84201	chrM	+	2499	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76308	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3309_3426
84202	SIRV5	+	4206	17	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3690.41274738934	23584	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2065_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7683_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
84203	chr9	+	1638	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	-39	0	3	0	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956870	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
84204	chr7	-	1151	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	48	2	-3	-2	multi-exon	FALSE	canonical	3	2548	junction_6	196.061655709387	2582	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTGTCAAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	113875305	113863842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
84205	chrX	-	1567	6	Antisense	novelGene_ENSMUSG00000031197.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1093	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAAATAACTACCTTCTG	NA	False	NA	NA	False	NA	NA	NA	74578543	74557929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_74558034_74560693_74560818_74564966_74565046_74566873_74566964_74574689_74574830_74577513
84206	SIRV5	+	4204	18	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	3432.34199101031	136445	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6459_6842_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
84207	chr14	-	2509	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-46	725	-26	7	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	7628	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCTGTACTTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	36857255	36842773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
84208	SIRV5	-	2471	18	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-9461	1150	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12706	64	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTCTTGCAGTATGCT	NA	False	NA	NA	False	NA	NA	NA	11867	1027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV5_-_1149_1986_2034_2119_2157_2270_2316_3298_3403_3481_3643_5379_5448_5538_5626_6110_6169_6326_6452_6825_6957_7143_7305_7678_7762_7869_8011_8275_8381_8453_8590_10863_10986_11128
84209	chr18	+	3170	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	-276	1561	-276	-367	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	359	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGTGCCAAGTGTGCTG	8688	False	NA	NA	False	NA	NA	NA	32970001	32999086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
84210	chr4	-	415	2	ISM	ENSMUSG00000085241.8	ENSMUST00000151374.2	426	3	0	387	0	-317	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	326	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATTCCTAAGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	132080944	132079631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_132080010_132080907
84211	chr9	-	2350	2	NNC	ENSMUSG00000074476.7	novel	1696	3	NA	NA	-162	8	intron_retention	TRUE	non_canonical	0	0	junction_1	0	13	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGCAGCATGGTGG	NA	False	NA	NA	False	NA	NA	NA	21669277	21666729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21666900_21667097
84212	chr10	-	2713	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	58	959	-13	-959	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	22534	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845583	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
84213	chr16	-	724	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	-40	-69	-40	69	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	33827867	33827143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33827100_33827900
84214	chrX	+	1220	7	FSM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	-430	9	-430	-9	multi-exon	FALSE	canonical	3	2920	junction_1	2439.95592514838	24690	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGCTTATGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73313987	73316732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
84215	chr3	-	1882	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	11	0	11	0	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	16763	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	NA	False	NA	NA	NA	98247295	98220485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
84216	chr11	+	2154	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	-113	443	-113	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940405	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
84217	chr1	+	3039	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	3	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	110.424453813456	1391	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTCACTGATAGCTGT	8322	False	NA	NA	False	NA	NA	NA	191307876	191353674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318689_191323920_191324022_191326540_191326586_191328284_191328485_191328998_191329122_191334417_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347940_191349923_191350023_191351707_191351894_191353276
84218	chr13	+	2301	16	NNC	ENSMUSG00000035367.10	novel	3594	3	NA	NA	-10616	-4555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	24891	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCGCGCACTCTGTGGTGA	NA	False	NA	NA	False	NA	NA	NA	58539445	58550315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_58539590_58539632_58540291_58541009_58541180_58541505_58541590_58541874_58541976_58542124_58542179_58542290_58542600_58542978_58543108_58543387_58543504_58544003_58544073_58544639_58544714_58545566_58545611_58546969_58547027_58547706_58547803_58548144_58548234_58550208
84219	chrX	-	1757	11	Antisense	novelGene_ENSMUSG00000062070.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1120	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGGAGGACCTTCGGGCG	NA	False	NA	NA	False	NA	NA	NA	105247295	105230763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_105230920_105235610_105235662_105237959_105238118_105238237_105238381_105240446_105240550_105241444_105241567_105243251_105243366_105243760_105243942_105246043_105246221_105246440_105246540_105246842
84220	chr8	+	527	1	FSM	ENSMUSG00000069862.7	ENSMUST00000139165.2	399	1	-81	-47	-81	47	mono-exon	FALSE	NA	NA	NA	NA	NA	46	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTGCCTACATTTCAGC	NA	False	NA	NA	False	NA	NA	NA	123933280	123933807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123933300_123933800
84221	chr10	-	1331	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	64	217	8	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	523	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959857	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
84222	chr7	+	815	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	-7	-36	-7	0	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	2802	False	NA	NA	False	NA	NA	NA	4795981	4797561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
84223	chr2	+	1858	12	NNC	ENSMUSG00000027018.12	novel	1576	11	NA	NA	-595	-107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	633.444016716592	18351	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	4221	False	NA	NA	False	NA	NA	NA	71218706	71271859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_71218774_71219281_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
84224	chr3	-	1209	7	NIC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	0	-19	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	656.238629531125	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCCTTTATTTATGCT	7190	False	NA	NA	False	NA	NA	NA	89906004	89902782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905411_89905834
84225	chr6	-	1641	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	70	464	-6	3	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	1800	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828018	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
84226	chr6	-	4757	13	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-629	2406	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_12	2380.74216223756	1283	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAGAAGTAAAGTGATGC	938	False	NA	NA	False	NA	NA	NA	7693883	7672762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108_7693484_7693762
84227	chr5	+	3854	21	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	-21436	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2022.39901849264	10721	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129842625	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129842967_129843484_129843630_129846300_129846448_129847668_129847802_129848535_129848696_129856084_129856313_129856425_129856508_129864017_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
84228	chr9	-	601	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	18	0	18	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	166	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	NA	NA	NA	78275441	78274333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
84229	chr1	+	1051	7	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-77	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1207.01455620423	10293	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATCACAGCAGTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	63216210	63219643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218808_63219466
84230	chr6	-	3138	8	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3377.46007091309	12	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712420_122716816_122716953_122717346_122717440_122719334
84231	chr2	-	2611	7	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	121	multi-exon	FALSE	canonical	0	0	junction_1	62.8640508469577	25696	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACCTTGAAATCTGGGT	NA	False	NA	NA	False	NA	NA	NA	156681710	156631610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
84232	chr5	-	2307	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	528	3	-528	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	118	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATTAGTTAAATGACTT	6767	False	NA	NA	False	NA	NA	NA	148989847	148984039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
84233	chr1	-	1789	6	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-259	0	intron_retention	FALSE	canonical	3	5452	junction_5	662.022839485165	89	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	16175145	16171518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
84234	chr8	+	3886	7	Fusion	ENSMUSG00000054717.8_ENSMUSG00000096917.3	novel	2628	5	NA	NA	-4	247	multi-exon	FALSE	canonical	0	0	junction_2	3070.70679522194	132	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCTGGCTCCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	57958844	57969280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_57958967_57959561_57959836_57964325_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
84236	chr5	-	999	7	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6635	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCTGGAAAGATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	129100188	129097311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129097341_129097589_129097637_129097745_129097831_129097927_129098054_129099064_129099253_129099436_129099608_129099835
84237	chr13	-	2827	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-123746	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	2572.38844485519	8727	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAGTAATCTTAAATTAT	NA	False	NA	NA	False	NA	NA	NA	58674903	58538974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548156_58674704
84238	chr8	+	3080	5	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	-197099	1075	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7351.72212393124	21398	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAAGAAGCTTTAAGGTA	NA	False	NA	NA	False	NA	NA	NA	27553257	27767777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_27553300_27613871_27613881_27750399_27750579_27763350_27763531_27765107
84239	chr5	-	1877	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	35	8	3	-8	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	229	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	8924	False	NA	NA	False	NA	NA	NA	142892474	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84240	chr14	+	6951	17	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	10	31989	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	3631.58931235262	13243	92	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCGGCCGCGCCGCTCGCG	NA	False	NA	NA	False	NA	NA	NA	63359920	63415361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63384420_63388600_63388749_63389772_63389951_63394003_63394197_63396458_63396595_63400747_63400937_63401981_63402081_63415133
84241	chr5	-	1889	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	2	0	-2	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	16	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84242	chr12	-	652	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	72	230	-3	0	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	38	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTGTAGTAACTTGT	NA	False	NA	NA	False	NA	NA	NA	28685880	28681082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
84243	chr15	-	4788	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	-62	-3220	-62	3220	multi-exon	TRUE	canonical	3	2495	junction_1	136.260065887095	16	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTATGTGGAGTTTT	2601	False	NA	NA	False	NA	NA	NA	43146177	43110233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
84244	chr19	-	1138	8	Antisense	novelGene_ENSMUSG00000065087.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAGAAAGACA	9577	False	NA	NA	False	NA	NA	NA	8703806	8700940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8701554_8701766_8701845_8702032_8702084_8702375_8702420_8702820_8702886_8703143_8703189_8703428_8703465_8703600
84245	chr1	+	642	2	Genic_Genomic	ENSMUSG00000058603.11	novel	414	1	NA	NA	-17	922	multi-exon	FALSE	non_canonical	0	0	junction_1	0	194	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAATCAAAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	127966288	127967641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_127966752_127967462
84246	chr3	+	1221	7	NNC	ENSMUSG00000038374.11	novel	2608	6	NA	NA	0	-884	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1643.96218529097	61	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATTGGCCCTTCTCTTC	8642	False	NA	-70	True	NA	NA	NA	96537255	96540223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004_96539528_96540023
84247	chr15	+	836	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	7	8	7	-8	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	240	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788284	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
84248	chr3	-	1774	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	80	39	80	-39	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	42	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCCTGAACTAATACCTAG	NA	False	NA	NA	False	NA	NA	NA	98247226	98220524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
84249	chr2	-	901	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	13	0	-10	0	multi-exon	FALSE	canonical	3	3926	junction_1	568.041078326794	15662	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	NA	False	NA	NA	NA	179684213	179678166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
84250	chrM	+	2499	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4612	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3309_3426
84251	chr6	+	1810	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	546	85	8	-85	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	245	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGTTTTTCATAAACAT	5156	False	NA	NA	False	NA	NA	NA	85429041	85445372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
84252	chr15	-	1394	12	FSM	ENSMUSG00000022336.4	ENSMUST00000228892.2	2633	12	1360	-121	1360	5	multi-exon	FALSE	canonical	3	2495	junction_1	141.836886878339	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	6960	False	NA	NA	False	NA	NA	NA	43141818	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703
84253	chr16	-	2089	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	55503	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
84254	chr3	+	1954	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	23	0	13	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	1226	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3827	False	NA	NA	False	NA	NA	NA	88204445	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
84255	chrX	+	1719	4	Fusion	ENSMUSG00000046432.13_ENSMUSG00000084216.2	novel	930	3	NA	NA	-35	258	multi-exon	FALSE	non_canonical	0	0	junction_3	2229.73605812188	17231	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAGAATTATGAA	NA	False	NA	NA	False	NA	NA	NA	135170966	135241675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_135171151_135171558_135171632_135172011_135172626_135240827
84256	chrM	+	2499	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63537	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3309_3426
84257	chr17	-	1423	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	12	27	12	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	114032	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGGTCTAGTATTG	9701	False	NA	NA	False	NA	NA	NA	29483148	29469803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
84258	chr3	-	2051	11	NNC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	-2852	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_10	115.991766949211	27	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30704870	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30704510
84259	chr10	-	2229	17	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-147720	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	600.652012269792	11806	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	117047439	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610_116899617_117047062
84260	chr4	-	996	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	28	99	-4	-99	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAAGTTCTGGGTCTCCA	6405	False	NA	NA	False	NA	NA	NA	129494413	129485851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
84262	chr19	-	2098	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	67	452	-62	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902356	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
84263	chr7	-	816	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	-1	-81	0	0	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	17607	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
84264	SIRV6	+	1498	5	FSM	SIRV6A	SIRV610	1163	5	-188	-147	-1	0	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	6348	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATACTTAGTTCAATCTT	NA	False	NA	NA	False	NA	NA	NA	2284	11837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
84265	chr3	+	1032	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	24	3	-9	-3	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	17654	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3581	False	NA	NA	False	NA	NA	NA	88486938	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
84266	chr17	+	711	6	FSM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	45	2	-3	0	multi-exon	FALSE	canonical	3	1664	junction_1	167.935225607971	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCGTGTCCCTGTCCC	NA	False	NA	NA	False	NA	NA	NA	28059105	28070937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
84267	chrM	+	1479	2	Genic_Genomic	ENSMUSG00000064357.1_ENSMUSG00000064359.1	novel	681	1	NA	NA	-161	-67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	117	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-11	True	NA	NA	False	NA	NA	NA	7765	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8800_8946
84268	chr9	-	594	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	18	7	18	-7	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	4956	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAATGTGCGTCGTCAT	NA	False	NA	NA	False	NA	NA	NA	78275441	78274340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
84269	chrX	+	503	1	FSM	ENSMUSG00000059461.8	ENSMUST00000118642.2	387	1	-32	-84	-32	84	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACACTGTCTTAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	161349820	161350323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161349800_161350300
84270	chr13	-	2189	16	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	1	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2858.41834742378	1259	114	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTTAGTTATGACGTGT	4766	False	NA	NA	False	NA	NA	NA	58550315	58539059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58539250_58539772_58540291_58541009_58541180_58541505_58541589_58541884_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544705_58545562_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
84271	chr4	+	3288	10	NNC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	1024	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	314.720020586592	621	27	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTAGTGTGTCTGGAGC	NA	False	NA	NA	False	NA	NA	NA	117408585	117531476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_117410241_117421817_117422096_117439796_117439914_117444981_117445178_117446294_117446355_117450267_117450360_117472365_117472439_117482818_117482997_117506503_117506604_117530937
84272	chr15	+	1202	8	Antisense	novelGene_ENSMUSG00000022312.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3910	5	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCCGGTGCCTTCCTTGC	NA	False	NA	NA	False	NA	NA	NA	51649955	51728823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_51650221_51651300_51651435_51653388_51653510_51659783_51659936_51661008_51661109_51662587_51662753_51705857_51706019_51728719
84273	chr13	-	2019	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	117023	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTATTTTTGGTGGTCTTT	4766	False	NA	NA	False	NA	NA	NA	58550315	58539768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
84274	chr5	-	1077	7	ISM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	44	0	-1	0	intron_retention	FALSE	canonical	3	8565	junction_1	2258.85099233118	105	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548743	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
84275	chr15	-	1194	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	96	5	27	-5	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTGTGTGTATTTA	NA	False	NA	NA	False	NA	NA	NA	51728823	51649958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
84276	chr1	-	4497	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	-3537	0	2495	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	10811	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCACATTCTCTGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	16727266	16709453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
84277	chr19	+	2024	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	77	-326	-38	326	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	4135	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTTGCTTTTGTATAT	4137	False	NA	NA	False	NA	NA	NA	41900438	41907425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
84278	chr18	+	2119	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	346	6	83	-3	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	737	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAATGTGTCTTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	77861774	77870563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
84279	chr13	-	4914	34	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	0	38358	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1166.39770374679	57477	12	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCTCCTGCTGTCAAT	NA	False	NA	NA	False	NA	NA	NA	97334865	97274480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97274535_97278432_97278519_97279515_97279599_97282152_97282211_97282725_97282824_97285814_97285947_97286837_97286920_97289733_97289823_97291695_97291757_97291926_97292107_97296592_97296676_97297525_97297676_97299359_97299501_97299582_97299683_97301518_97301702_97304769_97304848_97307990_97308130_97309016_97309195_97309443_97309562_97311367_97311552_97312106_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
84280	chr15	+	1678	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	52	-5	51	5	multi-exon	FALSE	canonical	3	1292	junction_2	43	48	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTTTCAGTGTCATTC	4197	False	NA	NA	False	NA	NA	NA	80139436	80141747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80139887_80140407_80140723_80140834
84281	chrM	-	1073	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1659	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGCAGGTAGGTCAATGAA	900	False	NA	60	True	NA	NA	NA	15288	14215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14200_15300
84282	chr1	-	2328	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-1543	-2	-1543	2	mono-exon	FALSE	NA	NA	NA	NA	NA	29214	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24654595	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24654600
84283	chr19	-	483	1	Antisense	novelGene_ENSMUSG00000067038.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGGGAAAAAGGTGATCTG	2742	False	NA	NA	False	NA	NA	NA	59311214	59310731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_59310700_59311200
84284	chr3	+	1845	12	NNC	ENSMUSG00000027673.13	novel	1079	6	NA	NA	-9489	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1447.98529740036	5086	5	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGATTCTGTGGCTGGT	8525	False	NA	NA	False	NA	NA	NA	32781649	32805380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32781861_32782575_32782673_32784225_32784359_32785306_32785408_32787738_32787801_32788259_32788409_32790790_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
84285	chr8	+	2271	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	101	1100	0	-1100	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	4502	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	1920	False	NA	NA	False	NA	NA	NA	106937668	106978326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
84286	chr3	-	2306	11	NNC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	-2909	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_10	115.146689053572	945	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30704927	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30704312
84287	chrM	+	4558	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-2734	0	2734	mono-exon	FALSE	NA	NA	NA	NA	NA	313	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		-4	True	NA	4	True	NA	NA	NA	11741	16299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_16300
84288	chr15	+	841	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	7	3	7	-3	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	839	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCGGCGTGTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	76788284	76790511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
84289	chr4	+	698	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33246	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	272.465337244942	10024	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	146500233	146550672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500373_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
84290	chr1	-	1902	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	-270	1004	-270	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	2633	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTTTTTAAAATTTAATT	522	False	NA	NA	False	NA	NA	NA	175453471	175428943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
84291	chr5	-	1607	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	284	0	102	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	276	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCGCGTCCATGCCCTGA	8918	False	NA	NA	False	NA	NA	NA	142892480	142889153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84292	chr19	+	1168	9	FSM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	-79	202	18	-2	multi-exon	FALSE	canonical	3	1115	junction_4	107.257575490032	21038	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATATGCCTGGCTCCTTCC	5867	False	NA	NA	False	NA	NA	NA	8848877	8853025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
84293	chr8	-	1091	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	254	580	0	-580	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	544	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATAAAACCAGACCGTAAG	NA	False	NA	NA	False	NA	NA	NA	46664067	46660413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
84294	chr3	-	1785	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	106	0	106	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	31151	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30701912	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
84295	chr2	+	1573	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	113	10	113	-10	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	73	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTTTTATTTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	31360331	31410674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
84296	chr17	+	1121	8	NNC	ENSMUSG00000037805.16	novel	830	6	NA	NA	0	145522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3546.93911732931	13688	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	28547559	28695529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803_28550013_28661436_28661616_28695307
84297	chr10	-	623	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	13	-1	13	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCAATAGACT	NA	False	NA	NA	False	NA	NA	NA	29575363	29574740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_29574700_29575400
84298	chr2	-	1579	16	Antisense	novelGene_ENSMUSG00000076441.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1067	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGACGGCGGAGCAGGGC	NA	False	NA	NA	False	NA	NA	NA	31410682	31360331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_31360349_31364716_31364781_31366895_31367005_31368944_31369014_31370984_31371174_31376498_31376556_31378587_31378663_31382323_31382394_31383153_31383186_31388156_31388248_31390842_31390930_31391499_31391563_31400119_31400251_31404687_31404846_31408735_31408802_31410381
84299	chr5	-	2392	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-116120	-2	intron_retention	TRUE	non_canonical	0	0	junction_5	1949.26712723868	1272	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	9544	False	NA	NA	False	NA	NA	NA	143008629	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891327_143007697_143008188_143008421
84300	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2233	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84301	chrM	+	1166	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	450	-71	450	71	mono-exon	FALSE	NA	NA	NA	NA	NA	12708	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	0	True	NA	88	True	NA	NA	NA	5777	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
84302	chr5	+	2168	10	NIC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	2	17	junction_1	1059.49673587668	88	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	334	False	NA	NA	False	NA	NA	NA	77099201	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77099350_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
84303	chr5	+	1827	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13244	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889816_142889979_142890140_142890540_142890993_142891234_142891320_142891446_142892404
84304	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	321385	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84305	chr8	+	1039	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	79	1510	12	1280	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	1609	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57965019	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
84306	chr2	-	1261	11	FSM	ENSMUSG00000027170.13	ENSMUST00000028592.12	1283	11	22	0	-15	0	multi-exon	FALSE	canonical	3	1722	junction_10	235.400531010446	13234	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2662	False	NA	NA	False	NA	NA	NA	104847403	104830000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
84307	chrM	+	2201	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	-1164	1	-1164	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	204	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	-3	True	NA	108	True	NA	NA	NA	2749	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_5000
84308	chr5	+	5147	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	1191	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	181289	114	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAGGCATTTGATATGT	NA	False	NA	NA	False	NA	NA	NA	108208609	108258061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
84309	chr3	+	1488	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	-67	183	-67	73	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	9993	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTGAGTTGAACAT	4857	False	NA	NA	False	NA	NA	NA	138148786	138161077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
84310	chr11	+	1281	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	-28	-1	-28	1	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	118	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGACTCTGCGGTA	NA	False	NA	NA	False	NA	NA	NA	9068478	9086168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
84311	chr13	-	1118	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	-106	18	-106	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	410	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAACA	NA	False	NA	NA	False	NA	NA	NA	97235851	97234733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97234700_97235900
84312	chr10	+	870	4	FSM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	56	5	1	0	multi-exon	FALSE	canonical	3	2420	junction_3	40.5983031938802	594	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	4501	False	NA	NA	False	NA	NA	NA	79978204	79981647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256
84313	chr6	+	3673	6	NNC	ENSMUSG00000029911.15	novel	1188	6	NA	NA	9	14022	intron_retention	FALSE	non_canonical	0	0	junction_5	1067.07450536502	3620	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGCATTCATTTTAGCC	NA	False	NA	NA	False	NA	NA	NA	40448357	40475656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786_40457827_40475643
84314	chr3	-	1744	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	147	0	147	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	7638	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30701871	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
84315	chr3	-	1744	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	147	0	147	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	5695	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30701871	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
84316	chr14	+	3614	15	Fusion	ENSMUSG00000090564.10_ENSMUSG00000021771.15	novel	1954	10	NA	NA	143	-2198	intron_retention	TRUE	non_canonical	0	0	junction_9	1143.73096281692	7	33	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAGATAGCCGAGGGACGG	NA	False	NA	NA	False	NA	NA	NA	21881936	21898910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213_21896997_21897263_21897816_21897940_21897995_21898068_21898185_21898273_21898388_21898611_21898735_21898841
84317	chr5	+	6197	9	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	32	4527	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	6456.34613069769	15	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAAGCTTGGCTGTCCTGG	507	False	NA	NA	False	NA	NA	NA	129097297	129105914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837_129103441_129103817_129105563_129105727
84318	chr1	-	2763	4	FSM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	75	3	-10	-3	multi-exon	FALSE	canonical	3	2337	junction_3	156.5907617539	1019	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTGGAGCCTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	180641122	180628399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035
84319	chr10	+	2711	22	Antisense	novelGene_ENSMUSG00000020277.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	9	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCCCCGCCCCGTGCG	9121	False	NA	NA	False	NA	NA	NA	77823743	77845580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_77824188_77824501_77824617_77824700_77824798_77825398_77825514_77825724_77825785_77825974_77826141_77826505_77826664_77827191_77827278_77827851_77827919_77828223_77828373_77829215_77829279_77829968_77830035_77831077_77831207_77832156_77832247_77833357_77833454_77835659_77835767_77835966_77836016_77836511_77836675_77837143_77837338_77837846_77837921_77841273_77841351_77845434
84320	chr9	-	1825	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	-5	4	-5	2	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	1405	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996832	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
84321	chr19	+	886	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	38	5	-20	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	23	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4907	False	NA	NA	False	NA	NA	NA	9960047	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
84322	chr3	+	704	5	FSM	ENSMUSG00000042747.13	ENSMUST00000040888.12	1172	5	474	-6	6	6	multi-exon	FALSE	canonical	3	1428	junction_1	178.055293378209	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGGTGTGCGTGTGTGT	7597	False	NA	NA	False	NA	NA	NA	89153746	89157219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89153823_89154084_89154240_89154371_89154436_89156380_89156448_89156877
84323	chr3	+	2166	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-187	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	691.195790859417	113	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3617	False	NA	NA	False	NA	NA	NA	88204235	88229074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208301_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
84324	chr3	-	970	5	FSM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	12	2010	5	0	multi-exon	FALSE	canonical	3	518	junction_3	10.5593560409714	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	NA	False	NA	NA	NA	57559124	57553779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_57554298_57557462_57557637_57558111_57558195_57558842_57558921_57559007
84325	chr19	+	2212	7	NNC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	-29	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	288.953139222724	3450	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCTATCTTTAACTTC	2044	False	NA	NA	False	NA	NA	NA	5417020	5421530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953_5421087_5421154
84326	chrM	+	930	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	107	1	107	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	11	False	NA	-50	True	NA	NA	NA	4020	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_4000_5000
84327	chr2	+	1591	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	10	95	-10	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	3415	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTTTTATTTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
84328	chr10	-	503	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	41	0	0	0	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	9496	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128384981	128383982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128384299_128384526_128384550_128384817
84329	chr8	+	1383	6	Fusion	ENSMUSG00000096917.3_ENSMUSG00000054717.8	novel	298	2	NA	NA	0	1280	multi-exon	FALSE	canonical	3	9	junction_1	3332.96346214596	11	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57958848	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_57958943_57959561_57959836_57965612_57965783_57966095_57966242_57966323_57966499_57966999
84330	chr17	-	1423	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	12	27	12	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	2145	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGGTCTAGTATTG	9701	False	NA	NA	False	NA	NA	NA	29483148	29469803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
84331	chr4	-	4057	1	NIC	ENSMUSG00000028982.10	novel	1887	7	NA	NA	23986	-2199	mono-exon	FALSE	NA	NA	NA	NA	NA	1218	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCCAAATTAGACTTTAC	NA	False	NA	NA	False	NA	NA	NA	149834748	149830691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_149830700_149834700
84332	chr6	+	3474	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-18	-1309	-13	1306	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	141	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAAAGTCTTAATAGTATA	3716	False	NA	NA	False	NA	NA	NA	117883737	117903889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
84333	chrM	+	3766	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-2388	0	-2388	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	2	True	NA	NA	False	NA	NA	NA	7778	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_11500
84334	chr3	-	1370	7	Antisense	novelGene_ENSMUSG00000005687.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10853	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCTTCAAGAGCGCCTTC	NA	False	NA	NA	False	NA	NA	NA	103086479	103079078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_103079181_103079262_103079357_103080590_103080661_103081654_103081818_103082934_103082984_103084652_103084736_103085670
84335	chr11	+	714	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	51	277	15	8	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	76	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	51510612	51514264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
84336	chr17	+	1712	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	2	25	2	2	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACCGTGTCTGTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	35460723	35472658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
84337	chr5	+	2066	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	499	23	499	-23	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	56	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGTGAAGCTACTGGATC	NA	False	NA	NA	False	NA	NA	NA	129864560	129875189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
84338	chr1	+	1207	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9439.51567547297	355	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	86454443	86458417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457279_86457452_86457527_86457686
84339	chr2	+	1591	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	10	95	-10	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	1546	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTCTTTTATTTGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
84340	chrX	-	5629	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115621.9	1338	7	86	-4377	-21	993	multi-exon	FALSE	canonical	3	764	junction_2	192.247597875471	6612	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGAATGTGATAACTGG	6464	False	NA	NA	False	NA	NA	NA	8012033	8004220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
84341	chr7	-	1619	11	NIC	ENSMUSG00000109324.3	novel	1508	11	NA	NA	-12	2	intron_retention	FALSE	canonical	3	165	junction_9	1344.93463038171	40	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTCGCCCTGGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	44635792	44626179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633194_44633558_44635706
84342	chr13	+	1281	2	Antisense	novelGene_ENSMUSG00000113858.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11090	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTAGCTGGCTTGCTCCTG	NA	False	NA	NA	False	NA	NA	NA	72602771	72620717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_72603398_72620062
84343	chr6	-	4282	4	Intergenic	novelGene_4232	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	264	58	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGCTACTGTAAACTCT	NA	False	NA	NA	False	NA	NA	NA	117925941	117888965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_117888974_117907710_117907963_117921653_117924389_117924654
84344	chr5	+	1705	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	30	532	30	-532	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	432674	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45650745	45669501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
84345	chr10	+	2537	14	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	24	17472	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	191.291809058877	5061	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTTTTCTTAACACGG	1032	False	NA	NA	False	NA	NA	NA	127851088	127883378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634_127866717_127883186
84346	chr5	-	1849	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	44	0	-5	0	multi-exon	FALSE	canonical	3	1073	junction_9	118.54686003725	1440	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	24650241	24646036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
84347	chr4	+	1264	1	Intergenic	novelGene_1861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1372	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACACTGTCACTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	57368114	57369378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_57368100_57369400
84348	chr17	-	7250	22	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	-20	35844	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2430.045844682	52	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGCCGGGCGCGGAAAA	NA	False	NA	NA	False	NA	NA	NA	6367713	6320770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6320866_6330870_6330976_6337199_6337255_6339258_6339347_6340829_6340953_6345197_6345309_6345995_6346078_6347502_6347602_6348125_6348256_6348421_6348516_6349637_6349693_6351163_6351269_6351675_6351727_6353493_6353579_6354520_6354610_6354850_6354917_6355641_6358177_6358245_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
84349	chrM	+	4501	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-3132	9	-3132	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	153	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACAATATGTGAATATAGT	-4	True	NA	NA	False	NA	NA	NA	7034	11535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7000_11500
84350	SIRV6	+	1469	10	FSM	SIRV6A	SIRV612	1528	10	29	30	-8	-29	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTTTAGAAGTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	1116	11795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
84351	chrX	+	836	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	112	4224	112	-4224	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	354	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTAAGCCCTGCCTT	5459	False	NA	NA	False	NA	NA	NA	158155285	158168700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
84352	chr5	-	999	7	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5792	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCTGGAAAGATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	129100188	129097311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129097341_129097589_129097637_129097745_129097831_129097927_129098054_129099064_129099253_129099436_129099608_129099835
84353	chr10	-	4429	8	FSM	ENSMUSG00000019942.14	ENSMUST00000020099.13	4375	8	-54	0	-54	0	multi-exon	TRUE	canonical	3	2056	junction_1	102.156542539739	4848	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGACTTAAGCAGATGTTT	NA	False	NA	NA	False	NA	NA	NA	69188822	69170975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
84354	chr5	+	2789	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	14	-215	14	215	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	32	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATACCTGTAACAGCTTAT	NA	False	NA	NA	False	NA	NA	NA	129864075	129875427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
84355	chr15	-	977	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	49	1286	0	-1	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	49924	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTCCGCCTCTTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	75781155	75767339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
84356	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	154	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84357	chr11	-	1739	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	-127	381	-117	-381	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	4	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTCAATTATGTATGTTG	NA	False	NA	NA	False	NA	NA	NA	115915457	115913167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
84358	chrX	-	3338	2	Genic_Genomic	ENSMUSG00000087569.2	novel	2200	1	NA	NA	-77	56959	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	101	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACGCGAACTCGAGTG	NA	False	NA	NA	False	NA	NA	NA	151274648	151215697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_151217168_151272780
84359	chr7	-	4038	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	-40	3302	-40	3149	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	186	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCAGAACATGTGGCGGT	NA	False	NA	NA	False	NA	NA	NA	105460346	105455714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105459352_105459656_105459726_105460014
84360	chr6	-	3723	5	Antisense	novelGene_ENSMUSG00000058446.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39326	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACTTATTACACCTGCCA	843	False	NA	NA	False	NA	NA	NA	54866711	54799941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_54802105_54840879_54840979_54855331_54855439_54861748_54861830_54865438
84361	chrM	+	1620	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-4	-71	-4	71	mono-exon	FALSE	NA	NA	NA	NA	NA	17	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-3	True	NA	NA	False	NA	NA	NA	5323	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
84362	chr8	-	809	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	-14	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	118	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	NA	False	NA	NA	NA	71350056	71348022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
84363	chr8	+	4531	15	NNC	ENSMUSG00000005161.16	novel	1500	6	NA	NA	-12982	-23	intron_retention	FALSE	non_canonical	0	0	junction_1	1866.7974377177	232	28	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCCTGTGAGTTCAAGTT	NA	False	NA	NA	False	NA	NA	NA	85683233	85701440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85684496_85684595_85684719_85686404_85686491_85686593_85686732_85691754_85691851_85691947_85692071_85692193_85692276_85692492_85692920_85694293_85694498_85695726_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
84364	chr7	-	5113	5	FSM	ENSMUSG00000008683.17	ENSMUST00000131374.8	5179	5	28	38	28	-32	multi-exon	FALSE	canonical	3	7367	junction_4	1521.10568337641	46	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTGTGTGAATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	117715383	117703632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715358
84365	chr9	+	891	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	-3	4	-3	-4	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	2727	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATAGCTTGGGTGTGGGCT	1571	False	NA	NA	False	NA	NA	NA	65967509	65973901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
84366	chr5	+	2378	8	NNC	ENSMUSG00000029304.15	novel	1410	7	NA	NA	-938	318	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	2158.63050878778	442	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAACCTTGTGTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	104582045	104589234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_104582574_104582861_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
84367	chrX	+	1229	7	FSM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	-430	0	-430	0	multi-exon	FALSE	canonical	3	2920	junction_1	2439.95592514838	23	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	NA	False	NA	NA	NA	73313987	73316741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
84368	chrM	+	2499	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	197	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3309_3426
84369	chr2	+	1593	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	95	8	95	-8	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	336	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTTATTTGTCTCTGCG	NA	False	NA	NA	False	NA	NA	NA	31360313	31410676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
84370	chr4	-	2271	21	NNC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	239.820656950147	17149	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	16	True	NA	NA	False	NA	NA	NA	34614892	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598675_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34610361_34610459_34611021_34611077_34614864
84371	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	288	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
84372	chr1	+	970	5	Antisense	novelGene_ENSMUSG00000102275.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGCTTCAAGGGCGCCC	1006	False	NA	NA	False	NA	NA	NA	4846604	4855905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_4847029_4847751_4847874_4852792_4852951_4854172_4854328_4855794
84373	chr17	+	2070	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	-133	509	-80	2	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	13543	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGGTTCCTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	13135135	13143445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
84374	chr11	-	487	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	60	512	5	-1	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	848	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGAGCTGGTCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	97673203	97668864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
84375	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	413	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
84376	chr17	+	2233	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	-1939	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	732.756136484407	43663	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGAGTTGTGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	29249662	29261867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29249814_29251657_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
84377	chr9	+	847	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	222	3	0	-3	multi-exon	FALSE	canonical	3	8868	junction_1	0	72	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTGTTTGTGTGTCCTGTG	NA	False	NA	NA	False	NA	NA	NA	108216474	108217539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108216758_108216975
84378	chr19	-	759	3	NNC	ENSMUSG00000024844.16	novel	758	3	NA	NA	88	0	at_least_one_novel_splicesite	FALSE	canonical	3	746	junction_2	2648	337	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	9074	False	NA	NA	False	NA	NA	NA	5416303	5414668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5415187_5415845_5415985_5416201
84379	chr10	-	826	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	177	222	-7	-222	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	531	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCACACCTGTCTGCCCA	5625	False	NA	NA	False	NA	NA	NA	80736626	80735505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80736094_80736315_80736385_80736457
84380	chr2	-	3552	7	Intergenic	novelGene_2838	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12971	73	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAACTTCAGACATGG	NA	False	NA	NA	False	NA	NA	NA	175325501	174978730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_174978823_175046181_175046374_175119515_175119822_175130033_175132242_175227685_175227950_175229725_175230104_175325389
84381	chrX	-	3355	2	Genic_Genomic	ENSMUSG00000087569.2	novel	2200	1	NA	NA	-77	56976	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5119	102	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAACACTCTCTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	151274648	151215680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_151217168_151272780
84382	chr8	+	4800	36	NNC	ENSMUSG00000004565.16	novel	4444	35	NA	NA	21	2800	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	76.851375248274	5	56	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTTTTTAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	3565445	3597067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3565557_3566506_3566569_3566680_3566750_3567076_3567165_3567324_3567408_3567557_3567656_3571274_3571416_3571507_3571668_3572100_3572182_3572276_3572406_3572587_3572669_3572758_3572925_3573257_3573342_3573757_3573868_3574010_3574167_3574251_3574330_3580961_3581168_3581428_3581561_3581637_3581762_3582002_3582117_3582351_3582428_3584529_3584671_3584831_3584896_3585461_3585631_3585819_3586003_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953_3594070_3596495
84383	chr13	-	1816	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	27	62	27	-62	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	211	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAATCTTTTATGTGAGC	NA	False	NA	NA	False	NA	NA	NA	97334838	97312900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
84384	chr15	+	1007	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	10	3	10	-3	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	354	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCGGCGTGTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	76788311	76790511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
84385	chr2	-	1031	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	89	46	6	-46	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	27404	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTTTGTAAATTATCTT	9593	False	NA	NA	False	NA	NA	NA	10085232	10060886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
84386	chr10	-	2184	15	ISM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	428	2	-11	-2	3prime_fragment	FALSE	canonical	3	1936	junction_8	214.938778659014	11467	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAATGTCTTACTGATCT	NA	False	NA	NA	False	NA	NA	NA	116899291	116886907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880
84387	chr15	-	2207	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	-311	3	-311	-3	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	8828	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2434	False	NA	NA	False	NA	NA	NA	77855324	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
84388	chr10	-	1625	6	NNC	ENSMUSG00000020018.7	novel	861	4	NA	NA	51	3194	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1145.18546969476	14381	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCTCAGCATCTCCGATG	NA	False	NA	NA	False	NA	NA	NA	93425517	93415696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93415833_93417595_93417689_93418304_93419393_93419891_93419957_93423859_93423986_93425400
84389	chr2	+	5242	12	NNC	ENSMUSG00000059005.14	novel	754	6	NA	NA	512	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	3999.84684624154	9	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGTGTGTGTGGTTTT	8044	False	NA	NA	False	NA	NA	NA	75490173	75499742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75490417_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741_75498260_75498344
84390	chrM	-	4511	1	Antisense	novelGene_ENSMUSG00000064360.1_AS_novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000064361.1_AS_novelGene_ENSMUSG00000064355.1_AS_novelGene_ENSMUSG00000065947.1_AS_novelGene_ENSMUSG00000064358.1_AS_novelGene_ENSMUSG00000064354.1_AS_novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS_novelGene_ENSMUSG00000064359.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17269	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTAGGCCATATAAGATA	-57	True	NA	NA	False	NA	NA	NA	11535	7024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7000_11500
84391	chr13	-	547	4	FSM	ENSMUSG00000021606.9	ENSMUST00000022097.6	568	4	19	2	19	-2	multi-exon	FALSE	canonical	3	2374	junction_2	33.95094500403	25	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGTGAGTTGTTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	73476642	73467994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476457
84392	chr17	-	1045	1	FSM	ENSMUSG00000043801.8	ENSMUST00000052440.8	685	1	-74	-286	-74	286	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	17566476	17565431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_17565400_17566500
84393	chr10	+	1346	8	FSM	ENSMUSG00000006728.13	ENSMUST00000006911.12	2053	8	134	573	52	50	multi-exon	FALSE	canonical	3	4641	junction_3	430.829906300927	31	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	126899536	126903216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
84394	chr7	-	2230	19	Fusion	ENSMUSG00000086526.3_ENSMUSG00000036427.6	novel	2884	18	NA	NA	135	0	multi-exon	FALSE	canonical	0	0	junction_18	464.759435980953	9824	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGGGCTCAGCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	33933392	33901583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516_33929856_33933311
84395	chr5	+	3955	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	-1	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	8629	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTAATGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108208609	108256869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
84396	chr6	-	7407	6	Antisense	novelGene_ENSMUSG00000058446.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9203	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCCAGCATATACTTTTC	NA	False	NA	NA	False	NA	NA	NA	54870459	54733765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_54733922_54799941_54801890_54840884_54840979_54855331_54855439_54861748_54861830_54865438
84397	chr6	-	2549	13	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-218	9417	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1515.16671249954	280	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCACTGGGGCGGTCTCTG	8267	False	NA	NA	False	NA	NA	NA	145022128	144930143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144930151_144944879_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614_145021840_145022075
84398	chr17	-	760	5	FSM	ENSMUSG00000024067.15	ENSMUST00000112571.5	622	5	38	-176	24	2	multi-exon	FALSE	canonical	3	140	junction_4	1057.76707620345	157	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATAGTTGTTGTATATG	NA	False	NA	NA	False	NA	NA	NA	74623365	74606474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623214
84399	chr10	-	6270	3	Antisense	novelGene_ENSMUSG00000112523.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	400	50	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAACACTGGAGTCAATG	NA	False	NA	NA	False	NA	NA	NA	106024060	105693288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_105693321_105825557_105826231_106018495
84400	chr1	-	991	5	FSM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	45	3167	-2	-1	multi-exon	FALSE	canonical	3	2059	junction_1	113.670576667843	5650	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACTGCTCAGGTCTTTT	1665	False	NA	NA	False	NA	NA	NA	4855917	4846600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
84401	chr3	+	2949	1	Intergenic	novelGene_3199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2042	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAAGGCTCCTGGGGT	NA	False	NA	NA	False	NA	NA	NA	153062885	153065834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_153062900_153065800
84402	chr4	+	3198	7	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	2996	4	NA	NA	-6	767	multi-exon	FALSE	non_canonical	0	0	junction_1	196.482399551037	2	43	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	920	False	NA	NA	False	NA	NA	NA	145237354	145302498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145257427_145257486_145261385_145261513_145263160_145263299_145263712_145264996_145301002_145301645_145301689
84403	chr17	-	1786	7	NIC	ENSMUSG00000036775.14	novel	2167	8	NA	NA	27	-21	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	67.8003605365701	225	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGTTTCTAGACAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26309167	26300224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26309070
84404	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	558	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	NA	False	NA	NA	NA	52122863	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
84405	chr16	-	724	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	-40	-69	-40	69	mono-exon	FALSE	NA	NA	NA	NA	NA	2318	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAGAAAGAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	33827867	33827143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33827100_33827900
84406	chr6	+	2207	3	Antisense	novelGene_ENSMUSG00000063694.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4824	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCGCCGTGACGTAACC	NA	False	NA	NA	False	NA	NA	NA	50540488	50543548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_50542365_50542470_50542649_50543395
84407	chrM	+	6140	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	77	-4672	77	4672	mono-exon	FALSE	NA	NA	NA	NA	NA	359	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-2	True	NA	NA	False	NA	NA	NA	5404	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_11500
84408	chrX	+	2890	3	Genic_Genomic	ENSMUSG00000087235.2	novel	2200	1	NA	NA	-77	56811	multi-exon	FALSE	non_canonical	0	0	junction_1	0	204	58	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGCATTGTCACCTGCG	NA	False	NA	NA	False	NA	NA	NA	151215680	151274483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_151217114_151217281_151217538_151273282
84409	chr4	-	1951	17	NNC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	219.384000883724	81547	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	-3	True	NA	NA	False	NA	NA	NA	34614911	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571796_34572441_34572573_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
84410	chr5	-	1795	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_2	1650.86546998839	955	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890192_142890538_142890991_142891232_142891318_142891448_142892406
84411	chr15	-	1516	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	-10	0	10	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	13193	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGAATTTCCTTTTGTG	2663	False	NA	NA	False	NA	NA	NA	43146115	43113443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
84412	chr5	+	6544	10	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	12	4974	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	7000.53544160272	4783	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTCTTCACCTTCGTTA	487	False	NA	NA	False	NA	NA	NA	129097277	129106361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837_129103441_129103817_129105563_129105727_129106082_129106201
84413	chr13	-	1618	2	Antisense	novelGene_ENSMUSG00000021608.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	173	56	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCAGAGCAATTGGGGC	NA	False	NA	NA	False	NA	NA	NA	73661261	73658742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_73659034_73659934
84414	chr6	+	877	1	FSM	ENSMUSG00000081669.2	ENSMUST00000119728.2	528	1	-19	-330	-19	330	mono-exon	FALSE	NA	NA	NA	NA	NA	41628	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTGCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85053154	85054031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85053200_85054000
84415	chr2	-	842	5	NNC	ENSMUSG00000018770.10	novel	714	5	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1845.53750639211	11	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	NA	False	NA	NA	NA	73741643	73738790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_73739207_73739527_73739722_73740207_73740286_73741298_73741405_73741595
84416	chrM	-	903	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	390	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTGTAATTTTACCTC	5379	False	NA	NA	False	NA	NA	NA	1023	120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_100_1000
84417	chr11	+	1007	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	43	749	0	316	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	6563	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGATCTCTAATTATCAA	NA	False	NA	NA	False	NA	NA	NA	95557825	95570850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
84418	chr1	-	1489	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	55	554	-15	-554	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	1	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7351	False	NA	NA	False	NA	NA	NA	160040390	160030490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
84419	chr3	-	4458	15	NNC	ENSMUSG00000028044.7	novel	849	3	NA	NA	-11630	299	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	872.72420369455	10037	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTACATAGTCCAGTCGTA	5020	False	NA	NA	False	NA	NA	NA	89337320	89322479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89323271_89323580_89323709_89325461_89326014_89329481_89329651_89330230_89330300_89330810_89330877_89331001_89331121_89331493_89331550_89331860_89331912_89332070_89332197_89333818_89334006_89334088_89334163_89334243_89334378_89334514_89334753_89335622
84420	chrM	+	1562	2	Genic_Genomic	ENSMUSG00000064356.1_ENSMUSG00000064359.1_ENSMUSG00000064358.1	novel	784	1	NA	NA	12	1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	1	True	NA	NA	False	NA	NA	NA	7777	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8851_8902
84421	chrM	+	764	1	Intergenic	novelGene_4279	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	39	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTAGTTCCCAAAATATGA	12	True	NA	13	True	NA	NA	NA	15424	16188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrM_+_15400_16200
84422	chr15	-	2097	9	NIC	ENSMUSG00000055762.17	novel	2152	10	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_7	1368.87366450487	89	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCTCTTGTGTTACTTGG	NA	False	NA	NA	False	NA	NA	NA	75781140	75767334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75774527_75775658_75781093
84423	chr10	-	639	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	7	-11	7	11	mono-exon	FALSE	NA	NA	NA	NA	NA	15840	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATAGACTTCCTATATAC	NA	False	NA	NA	False	NA	NA	NA	29575369	29574730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_29574700_29575400
84424	chr13	-	5619	9	Fusion	ENSMUSG00000114072.2_ENSMUSG00000021477.10	novel	1971	8	NA	NA	0	-3	multi-exon	FALSE	canonical	1	1	junction_1	447.791525154284	47	104	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTGTGTGTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	64518120	64507153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_64509647_64509872_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
84425	chr17	-	1929	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	7	52	7	-52	mono-exon	FALSE	NA	NA	NA	NA	NA	11	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATGTCCTGTAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	90217870	90215941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_90215900_90217900
84426	chr1	-	1565	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-884	-3	-884	3	mono-exon	FALSE	NA	NA	NA	NA	NA	12	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24654616	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24654600
84427	chr14	+	933	8	Antisense	novelGene_ENSMUSG00000021807.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	60	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGCCGGGACAGGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	19861984	19873829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_19862306_19862416_19862465_19864603_19864673_19866251_19866342_19867128_19867216_19869974_19870077_19872635_19872759_19873736
84428	chr15	+	1662	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	3	2964	3	-2964	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	12903	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGTGTCCTGGATGTGGT	NA	False	NA	NA	False	NA	NA	NA	84076444	84098504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
84429	chr5	+	2572	9	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	-14982	530	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2486.84023599728	1187	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCGAATTTCACTGG	NA	False	NA	NA	False	NA	NA	NA	108033385	108057401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108033454_108048438_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
84430	chr4	+	1050	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	137	5	137	-5	multi-exon	FALSE	canonical	3	257	junction_2	16.5	2641	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTAGTTTGTGTTTGG	13	True	NA	NA	False	NA	NA	NA	59035224	59041898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_59035319_59039226_59039359_59041074
84431	chr5	-	1621	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1537.10969752397	126	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889251_142889518_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84432	chr5	+	1407	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	3	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	14358	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
84433	chr13	+	2298	2	Genic_Genomic	ENSMUSG00000090004.2	novel	339	1	NA	NA	-56	6927	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTCTTATTATCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	74488601	74495923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_74489684_74494707
84434	chr10	-	629	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	6	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	75	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAGTGGAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	29575376	29574747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_29574700_29575400
84435	chr9	+	522	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	523	235	2	0	multi-exon	FALSE	canonical	3	5317	junction_4	3059.10970504492	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGGGTGCATCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	44318958	44321489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
84436	chr13	-	2872	16	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	2765.71114423277	327	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTATGACGTGTGCCCAA	4778	False	NA	NA	False	NA	NA	NA	58550303	58539053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877_58550088_58550206
84437	chr5	+	1760	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	478	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888877	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889701_142889948_142890001_142890095_142890540_142890993_142891234_142891320_142891446_142892404
84438	chr1	+	2500	10	ISM	ENSMUSG00000026483.14	ENSMUST00000097541.10	4010	15	69967	9012	-35748	-9012	internal_fragment	FALSE	canonical	3	183	junction_1	17.4469212679027	83	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTTTAAAAAATGAAACAT	NA	False	NA	NA	False	NA	NA	NA	151517169	151586081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847
84439	chr5	-	1643	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-19	intron_retention	FALSE	canonical	0	0	junction_1	1632.92395413871	5368	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTACCTTACACAAACAG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889601_142889954_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84440	chr5	-	1884	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	28	8	-1	-8	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	63290	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	8917	False	NA	NA	False	NA	NA	NA	142892481	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84441	chr3	+	1528	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-23	-17	-23	17	mono-exon	FALSE	NA	NA	NA	NA	NA	2194	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCAACATGCTTAGTCAT	5417	False	NA	NA	False	NA	NA	NA	54388835	54390363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54388800_54390400
84442	chr3	-	2969	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	-18	6	-18	-6	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	14000	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTGTTTTGTTTTTCTGT	2698	False	NA	NA	False	NA	NA	NA	65300062	65287081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
84443	chr4	+	1109	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	464	45	464	-45	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCTTGGTTTCAATCAT	NA	False	NA	NA	False	NA	NA	NA	86494368	86495477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_86494400_86495500
84444	chr6	-	4033	9	NIC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	intron_retention	FALSE	canonical	3	8407	junction_1	783.442393782083	177	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122714258_122716791_122716953_122717346_122717440_122719334
84445	chr4	-	1732	2	Antisense	novelGene_ENSMUSG00002075410.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4083	75	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTAAGCCGGCGGCGG	NA	False	NA	NA	False	NA	NA	NA	103422429	103420552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_103421938_103422082
84446	chr14	-	1132	8	Antisense	novelGene_ENSMUSG00000021771.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGTCAAAAGAAACATTCT	NA	False	NA	NA	False	NA	NA	NA	21895582	21882951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21883020_21883867_21883918_21887810_21887963_21888056_21888111_21888457_21888687_21890486_21890636_21893945_21894005_21895211
84447	chr7	-	2493	20	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-100942	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	604.587948323168	10554	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTCTTAGGGTTTTATT	6767	False	NA	NA	False	NA	NA	NA	34030703	33900757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901129_33901570_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516_33929729_34030616
84449	chr10	+	840	8	NNC	ENSMUSG00000061315.15	novel	885	8	NA	NA	-26	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5231.83239839523	432	31	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGACTCAGCAGGTGCTA	4946	False	NA	NA	False	NA	NA	NA	127871477	127884496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127871572_127872378_127872430_127882036_127882123_127882597_127882676_127883526_127883678_127883874_127883997_127884113_127884237_127884361
84450	chr2	+	507	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	188	2361	0	5	multi-exon	FALSE	canonical	3	5931	junction_1	722	12810	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGCCTGGTTTGACTGG	NA	False	NA	NA	False	NA	NA	NA	121279863	121281540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121279923_121280455_121280565_121281201
84451	chr7	+	1536	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	449	4	3	-4	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	20867	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCTTGGTGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	140462329	140478551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
84452	chr7	-	658	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	18	0	18	0	multi-exon	FALSE	canonical	3	3852	junction_1	65	8157	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCGATTTTTCTTGAGT	2508	False	NA	NA	False	NA	NA	NA	126859863	126856130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126856509_126858529_126858641_126859694
84453	chr13	-	5721	10	NNC	ENSMUSG00000021477.10	novel	6168	9	NA	NA	-14	171	at_least_one_novel_splicesite	FALSE	non_canonical	1	1	junction_1	557.590606045885	8729	97	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACATTAAATAAATATATC	NA	False	NA	NA	False	NA	NA	NA	64518134	64506979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64509647_64509872_64510883_64510968_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
84454	chr5	+	6232	20	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	-38164	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1642.77624112152	13966	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	77060989	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77063252_77063790_77063911_77065878_77066105_77067218_77067346_77067602_77067755_77069316_77069392_77070059_77070206_77070297_77070415_77073520_77073727_77074636_77074707_77098804_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
84455	chr5	-	2231	9	Antisense	novelGene_ENSMUSG00000019179.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12433	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGAGCCACCTGATCTC	NA	False	NA	NA	False	NA	NA	NA	135820187	135807499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_135807654_135812156_135812331_135813042_135813118_135814778_135814893_135815086_135815211_135816392_135816468_135818048_135818152_135818476_135818631_135818929
84456	chr5	-	1527	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	364	0	22	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	10402	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCCAAGTATCCATGAAA	8918	False	NA	NA	False	NA	NA	NA	142892480	142889233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84457	chr5	-	1633	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_2	1650.86546998839	23473	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142889978_142890328_142890538_142890991_142891232_142891318_142891448_142892406
84458	chr5	+	2169	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	405	14	405	-14	multi-exon	FALSE	canonical	3	3618	junction_3	465.957308149311	10842	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864466	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
84459	chr8	-	1420	4	FSM	ENSMUSG00000090137.9	ENSMUST00000125184.8	711	4	214	-923	12	923	multi-exon	FALSE	canonical	3	14257	junction_3	3914.7897346686	166	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCGTGATGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	70963017	70959989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962987
84460	chr2	+	1476	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	-7	107	-7	-107	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	1799	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5111	False	NA	NA	False	NA	NA	NA	71219596	71271859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
84461	chr8	-	795	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	-6	4	-6	-4	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	37095	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCTAGTATGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	13940274	13934797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
84462	chr17	+	1313	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	42	7	42	-7	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	42881	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3078	False	NA	NA	False	NA	NA	NA	35816956	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
84463	chr9	+	1516	4	Genic_Genomic	ENSMUSG00000098492.2_ENSMUSG00000099253.2	novel	805	1	NA	NA	-22	63	multi-exon	FALSE	non_canonical	0	0	junction_1	0	197	21	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAACAAAAACAAAAGACC	NA	False	NA	NA	False	NA	NA	NA	72035846	72197456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_72036732_72148051_72148139_72156359_72156375_72196927
84464	chr8	-	1101	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-73	-74	-73	74	mono-exon	FALSE	NA	NA	NA	NA	NA	3597	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592503	103591402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592500
84465	chr10	+	1251	11	NNC	ENSMUSG00000020089.9	novel	1364	11	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1208.56809489577	18	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAATAAAATTATTTTACT	2121	False	NA	NA	False	NA	NA	NA	61484399	61509923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496791_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
84466	chr14	-	963	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	33	566	33	-566	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	9878	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1721	False	NA	NA	False	NA	NA	NA	19873859	19861984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
84467	chr4	+	2323	8	NNC	ENSMUSG00000073733.5	novel	985	6	NA	NA	18	43220	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2.91372543633873	15	28	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAGCAAAAAACAAAGATA	NA	False	NA	NA	False	NA	NA	NA	140941284	140997287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140941375_140941633_140941784_140944562_140944716_140945415_140945541_140945848_140945986_140947147_140948499_140963834_140964061_140997196
84468	chr6	-	795	2	Genic_Genomic	ENSMUSG00000080932.4	novel	615	1	NA	NA	-25	81385	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12955	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	122676012	122593987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_122594070_122675299
84469	chr15	+	2366	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	-3	-381	-3	381	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	6453	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTACTCTCCCCGCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	98927768	98936372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
84470	chr9	-	1038	5	Fusion	ENSMUSG00000060461.6_ENSMUSG00000032346.8	novel	619	3	NA	NA	45	-14	multi-exon	FALSE	canonical	3	1945	junction_4	85092.2978370399	111	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTGATTAAAATGTGCG	NA	False	NA	NA	False	NA	NA	NA	78285962	78274347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_78274577_78275002_78275186_78275266_78275383_78285256_78285440_78285635
84471	chr13	-	858	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	30	0	-9	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	366	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453484	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
84472	chr9	-	2018	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	143	-23	143	23	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	475	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATGTGTAAGGGTG	NA	False	NA	NA	False	NA	NA	NA	78285864	78283367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78284974_78285256_78285440_78285635
84473	chr8	-	3862	10	NNC	ENSMUSG00000052906.8	novel	2808	8	NA	NA	-80464	815	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	102.425884074266	1729	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCTCCAACAGTCCTGAA	NA	False	NA	NA	False	NA	NA	NA	34212459	34108798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877_34132037_34141479_34141661_34212442
84474	chr3	-	2918	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	33	6	33	-6	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	58	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTGTTTTGTTTTTCTGT	2749	False	NA	NA	False	NA	NA	NA	65300011	65287081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
84475	chr7	-	597	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	79	0	79	0	multi-exon	FALSE	canonical	3	3852	junction_1	65	653	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCGATTTTTCTTGAGT	2569	False	NA	NA	False	NA	NA	NA	126859802	126856130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126856509_126858529_126858641_126859694
84476	chr11	-	1730	7	NNC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2433.92299362344	592	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120239290	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
84477	chr5	+	1385	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	820	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888877	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889320_142889941_142890003_142890098_142890540_142890993_142891234_142891320_142891446_142892404
84478	chr9	+	884	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-22	-64	-22	64	mono-exon	FALSE	NA	NA	NA	NA	NA	38	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACACATCCTTGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	84306014	84306898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
84479	chr11	+	1047	7	NNC	ENSMUSG00000036309.15	novel	1440	6	NA	NA	0	2588	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1909.92324598544	193	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGACCTGGGGGTTGAAC	439	False	NA	NA	False	NA	NA	NA	52122863	52140273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811_52137304_52140256
84480	chr4	-	2096	19	NNC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_16	215.473416480726	156	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	-12	True	NA	NA	False	NA	NA	NA	34614920	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605625_34607130_34607229_34611021_34611077_34614864
84481	chr1	+	470	4	NNC	ENSMUSG00000061518.12	novel	625	4	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3383.70989694251	7	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	NA	False	NA	NA	NA	36730639	36732467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_36730739_36731284_36731366_36731531_36731632_36732277
84482	chr13	-	1273	2	Genic_Genomic	ENSMUSG00000057762.7	novel	1030	1	NA	NA	-1623	-22	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8961	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	97237368	97234737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_97235842_97237199
84483	chr15	+	1001	1	FSM	ENSMUSG00000067547.7	ENSMUST00000146631.2	819	1	-60	-122	-60	122	mono-exon	FALSE	NA	NA	NA	NA	NA	51821	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6683343	6684344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_6683300_6684300
84484	chr11	+	2190	4	ISM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	35	4	0	-4	intron_retention	FALSE	canonical	3	440	junction_1	35.6931365951495	109	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGCCTATGTTTATATC	908	False	NA	NA	False	NA	NA	NA	96932420	96940035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238
84485	chr7	+	639	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	33	7	5	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	13642	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	5955	False	NA	NA	False	NA	NA	NA	45367527	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
84486	chrM	+	3244	3	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	482	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	277	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	123	False	NA	NA	False	NA	NA	NA	9088	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_9096_11854_13951_14147
84487	chr4	+	6199	2	Antisense	novelGene_ENSMUSG00000089294.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7255	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGCATGCTGGCCAGGG	NA	False	NA	NA	False	NA	NA	NA	139687239	139694936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_139687249_139688746
84488	chr4	+	454	4	Antisense	novelGene_ENSMUSG00000088351.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGCAGGCTGGCCGAGCT	-2	True	NA	NA	False	NA	NA	NA	3834469	3835549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_3834684_3834935_3835010_3835191_3835291_3835482
84489	chr15	-	1516	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	-10	0	10	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	2	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGAATTTCCTTTTGTG	2663	False	NA	NA	False	NA	NA	NA	43146115	43113443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
84490	chr5	-	1839	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	52	0	-52	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	165	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTACACTGACTTGAGACC	8918	False	NA	NA	False	NA	NA	NA	142892480	142888921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84491	chr11	+	1559	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	7	1282	7	57	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	2722	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAAAGCTGTGCTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	80319457	80362792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
84492	chr2	+	1471	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	-2	107	-2	-107	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	8159	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGCCCACTGCTTTCTT	5116	False	NA	NA	False	NA	NA	NA	71219601	71271859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
84493	chr13	-	1794	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	27	84	27	-84	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	404	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCTATCCCTGAATCAA	NA	False	NA	NA	False	NA	NA	NA	97334838	97312922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
84494	chr10	+	1389	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	-25	0	-25	0	multi-exon	FALSE	canonical	3	3777	junction_3	128.102654148929	10	59	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2027	False	NA	NA	False	NA	NA	NA	61484305	61509947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
84495	chr15	-	1176	9	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	54	213	1	-209	5prime_fragment	FALSE	canonical	3	16287	junction_8	5155.41004067572	862	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGCATTTATGGTA	3572	False	NA	NA	False	NA	NA	NA	79967553	79962204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
84496	chr2	-	1796	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	-3	2	-3	-2	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	288	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3939	False	NA	NA	False	NA	NA	NA	3513854	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
84497	chr19	-	2674	10	NNC	ENSMUSG00000010095.14	novel	2813	10	NA	NA	-447	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	981.770333456008	7458	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAATAAACATTTTTTG	NA	False	NA	NA	False	NA	NA	NA	8692244	8684272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691227_8692080
84498	chr7	+	1609	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	37	250	-27	-250	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	7893	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTCTTGCATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	120234435	120258497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
84499	chr18	+	2008	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	78	124	46	-124	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	47	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTTGTTTTTAATTAA	NA	False	NA	NA	False	NA	NA	NA	60693885	60705758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
84500	SIRV6	+	1311	6	FSM	SIRV6A	SIRV613	1311	6	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	4084	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
84501	chr3	+	2460	3	NNC	ENSMUSG00000068523.13	novel	593	3	NA	NA	68	1577	intron_retention	FALSE	canonical	3	103	junction_1	1735	127	43	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCGAGTTCCTGAATTC	NA	False	NA	NA	False	NA	NA	NA	146205931	146212904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_146206436_146209014_146209155_146211088
84502	chr6	+	2164	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	47	0	47	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	2260	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684573	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
84503	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	52	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
84504	chr7	+	706	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	5	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1309	False	NA	NA	False	NA	NA	NA	3707036	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
84505	chr4	-	2228	20	NNC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	168.661686647965	106	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	-5	True	NA	NA	False	NA	NA	NA	34614913	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34570987_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
84506	chr8	+	1461	4	Antisense	novelGene_ENSMUSG00000031633.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCGATGCCACCTGCCAGG	NA	False	NA	NA	False	NA	NA	NA	46659882	46663904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_46660660_46661435_46661578_46662059_46662543_46663845
84507	chrX	-	1133	8	NNC	ENSMUSG00000025289.16	novel	990	7	NA	NA	-8795	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	384.502912597445	304	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCGTTTGCCATTGTAAT	NA	False	NA	NA	False	NA	NA	NA	154132545	154106915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108_154121424_154132360
84508	chr3	+	823	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	156	90	30	14	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTTAATAATCGGGACT	NA	False	NA	NA	False	NA	NA	NA	137570403	137572593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
84509	chr9	-	2286	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	30	4	-1	-4	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	20743	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACTTGGGTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100916921	100864088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
84510	chr5	-	1750	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-14	intron_retention	FALSE	non_canonical	0	0	junction_2	1650.86546998839	6950	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTACACAAACAGCTTGT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142889983_142890204_142890538_142890991_142891232_142891318_142891448_142892406
84511	chr5	+	1620	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	115	532	-15	-532	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	113	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45650830	45669501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
84512	chr15	-	2997	1	NIC	ENSMUSG00000023022.15	novel	4243	11	NA	NA	-23600	481	mono-exon	FALSE	NA	NA	NA	NA	NA	22	107	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCTTATAGAGAGTATAAT	NA	False	NA	NA	False	NA	NA	NA	99741624	99738627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_99738600_99741600
84513	chr10	+	1078	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	43	1915	43	48	multi-exon	FALSE	canonical	3	3512	junction_3	116.998575489904	31	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGGCTTTTTTGTTT	1445	False	NA	NA	False	NA	NA	NA	75353427	75371300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
84514	chrM	+	5215	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-290	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3599	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-1	True	NA	NA	False	NA	NA	NA	9876	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84515	chrM	+	5962	3	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12974_13046_13951_14147
84517	chr13	+	3755	6	FSM	ENSMUSG00000021707.6	ENSMUST00000022218.6	5347	6	411	1181	411	-1181	multi-exon	FALSE	canonical	3	1135	junction_5	174.184270242752	41657	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAAATAGTTGACAATA	NA	False	NA	NA	False	NA	NA	NA	92491644	92524380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
84518	chr14	+	812	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	238	119	0	-1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	1095	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTAAGAACTCTTTGCTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
84519	chr9	-	2289	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	21	10	0	-10	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACATACTTGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	100916930	100864094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
84520	chr1	-	1130	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-345	-2	-345	2	mono-exon	FALSE	NA	NA	NA	NA	NA	13768	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653397	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653400
84521	chr4	-	7383	6	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	25	98	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTAGAAAAGGTTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	42231478	41877122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41877766_41877912_41878296_41879659_41880988_42207622_42207630_42226365_42231138_42231228
84522	SIRV6	+	554	8	FSM	SIRV6A	SIRV602	574	8	20	0	7	0	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	261	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1144	11279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
84523	chr6	+	479	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	-33	-92	-33	92	mono-exon	FALSE	NA	NA	NA	NA	NA	4662	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTCCAGAACAATGAAAGAG	NA	False	NA	NA	False	NA	NA	NA	71101560	71102039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_71101600_71102000
84524	chr10	+	1731	9	NNC	ENSMUSG00000061315.15	novel	6745	9	NA	NA	10	2157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	3777.7938316397	6309	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTTATGTGTAGTGCGCT	4982	False	NA	NA	False	NA	NA	NA	127871513	127886663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361_127885056_127886300
84525	chr6	-	2410	2	ISM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	11036	-1	1690	1	3prime_fragment	FALSE	canonical	3	8407	junction_1	0	21165	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122708445	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351
84526	chr9	-	2256	2	Genic_Genomic	ENSMUSG00000099019.2	novel	517	1	NA	NA	-199	221581	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6346	91	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCTTCCGAGAGGCACA	NA	False	NA	NA	False	NA	NA	NA	72339124	72116827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_72117799_72337839
84527	chr5	+	1794	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29702	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890006_142890195_142890540_142890993_142891234_142891320_142891446_142892404
84528	chr10	-	1512	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	-12	-17	-10	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959829	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
84529	chr19	-	899	7	FSM	ENSMUSG00000059734.8	ENSMUST00000075092.8	983	7	45	39	45	-36	multi-exon	FALSE	canonical	3	209	junction_6	645.480290601933	5970	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCCCCTTTAGCCCATA	NA	False	NA	NA	False	NA	NA	NA	3962689	3958905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962466
84530	chr9	-	486	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	23	110	23	-110	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	121	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAGCTTTGTTACATCCT	NA	False	NA	NA	False	NA	NA	NA	78275436	78274443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
84531	chr5	+	1500	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTAGAAGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	142888901	142891075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993
84532	chr9	-	636	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	18	-35	18	35	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	2329	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTTCCCGGTGTCCGTT	NA	False	NA	NA	False	NA	NA	NA	78275441	78274298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
84533	chr19	-	2236	15	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	-2638	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	881.574727405454	6940	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	9012	False	NA	NA	False	NA	NA	NA	7019973	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247_7017317_7019825
84534	chr15	-	2198	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	-302	3	-302	-3	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	8830	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTCGTCCTGTGCTCCC	2443	False	NA	NA	False	NA	NA	NA	77855315	77843200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
84535	chr2	-	3295	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	-1787	10	-1787	-10	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	5935	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATGTAATTACGTTGTG	6438	False	NA	NA	False	NA	NA	NA	132097021	132091091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
84537	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	15299	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
84538	chr5	-	1710	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-62153	-8	intron_retention	FALSE	non_canonical	0	0	junction_5	1654.6796668842	5798	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	NA	False	NA	NA	False	NA	NA	NA	142954662	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891327_142954640
84539	chr11	+	1269	6	NNC	ENSMUSG00000071866.13	novel	1170	5	NA	NA	-121	71770	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	15042.0886528434	40216	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGATTGAAGTCTATCTA	NA	False	NA	NA	False	NA	NA	NA	6365746	6441587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477_6369812_6441178
84540	SIRV3	+	1084	8	FSM	SIRV3A	SIRV304	1083	8	-1	0	-1	0	multi-exon	FALSE	canonical	3	1134	junction_6	907.203057620014	5698	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTAACGTCTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	1962	8937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7367_7872_7989_8124_8208_8755
84541	chr11	+	4543	31	NNC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	-7013	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1210.54350695141	1405	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACTCCAGTTTGTTAAT	NA	False	NA	29	True	NA	NA	NA	106139966	106153949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_106140443_106140529_106140623_106140696_106140880_106140977_106141081_106141173_106141260_106141387_106141660_106141725_106141852_106141980_106142162_106143028_106143164_106143252_106143404_106143491_106143571_106143723_106143827_106143906_106144011_106144113_106144230_106144306_106144505_106144589_106144687_106145431_106145512_106145610_106145661_106146146_106146255_106146413_106146504_106146586_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
84542	chr5	-	1828	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1537.10969752397	26940	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889263_142889323_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84543	chr6	+	6241	7	ISM	ENSMUSG00000029823.17	ENSMUST00000161538.8	4253	8	17400	-787	-1237	787	3prime_fragment	FALSE	canonical	3	61	junction_6	27.3901847788988	2473	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGGTGTTGAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	38545799	38584089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38580211
84544	chr10	+	1577	7	ISM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	113	0	53	0	3prime_fragment	FALSE	canonical	3	10794	junction_5	661.048409725037	79	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	5025	False	NA	NA	False	NA	NA	NA	127871556	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
84545	chr7	+	2773	20	Antisense	novelGene_ENSMUSG00000084453.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	25	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGACAGGGACGACTCC	NA	False	NA	NA	False	NA	NA	NA	126146082	126165293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126146253_126146356_126146519_126146605_126146695_126146777_126146846_126146935_126147103_126151150_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156672_126156857_126156998_126157806_126157907_126158020_126158184_126161736_126161865_126162176_126162286_126162416_126162470_126162798_126162920_126163581_126163771_126163868_126163943_126165251
84546	chr8	-	1377	2	Genic_Genomic	ENSMUSG00000109933.2_ENSMUSG00000110313.2	novel	785	1	NA	NA	-41	65	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9689	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCACAACCCAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	11765280	11733393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_11734246_11764755
84547	chr17	+	971	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	230	1	199	-1	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	2745	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547819	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
84548	chr12	-	2131	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	72	-1249	-3	1249	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	1289	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGCTTCATCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	28685880	28679603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
84549	chr17	+	1689	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	25	25	-7	2	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	23890	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACCGTGTCTGTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	35460746	35472658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
84550	chr7	+	1840	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	60	-4	-4	4	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	132	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTCTCAGCTGGTTCCT	NA	False	NA	NA	False	NA	NA	NA	120234458	120258751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
84551	chrX	-	2450	4	FSM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	141	-149	-19	149	multi-exon	FALSE	canonical	3	1598	junction_1	83.5636816379513	54	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCTTGGTGTGTGCAGA	NA	False	NA	NA	False	NA	NA	NA	73412138	73409174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73411193_73411306_73411516_73411758_73411865_73412021
84552	chr17	-	669	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	-60	-168	-60	168	mono-exon	FALSE	NA	NA	NA	NA	NA	31317	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCATCCTGGGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	5866975	5866306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_5866300_5867000
84553	chr4	+	5313	6	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066007.16	novel	4244	5	NA	NA	17	42994	multi-exon	FALSE	canonical	0	0	junction_1	32.1683073847537	3	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	146093410	146257998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093548_146209452_146209576_146214976_146215005_146250678_146250737_146251579_146251707_146253158
84554	chr5	-	1777	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	31	112	-1	7	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	10261	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGAAGGCTTTGGTCTC	8920	False	NA	NA	False	NA	NA	NA	142892478	142888981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84555	chr9	-	1626	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	16	6209	16	1522	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	2274	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCTGGTTCAGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	21061262	21050726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
84556	chr2	-	1497	4	NNC	ENSMUSG00000078865.9	novel	531	4	NA	NA	3099	37124	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	505.350043699085	2782	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAAATTAGGGAA	5447	False	NA	NA	False	NA	NA	NA	177266893	177223872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177223949_177262125_177263288_177263479_177263607_177266761
84557	chr5	-	1852	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	39	0	-39	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	4019	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGACCAATAAAAGTGCAC	8918	False	NA	NA	False	NA	NA	NA	142892480	142888908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84558	chr11	+	1660	4	Antisense	novelGene_ENSMUSG00000048076.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCATGTTTGTGGACAGGT	NA	False	NA	NA	False	NA	NA	NA	59102239	59104307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_59103521_59103645_59103771_59103967_59104078_59104163
84559	chr5	+	1876	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31064	57	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888877	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890015_142890116_142890540_142890993_142891234_142891320_142891446_142892404
84560	chrX	+	3097	3	Genic_Genomic	ENSMUSG00000087235.2	novel	2200	1	NA	NA	-77	56968	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	102	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCGAGTGAAACACTCT	NA	False	NA	NA	False	NA	NA	NA	151215680	151274640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_151217057_151217132_151217528_151273314
84561	chr12	+	2388	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	-98	1115	-98	-1115	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	571	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTACAATATCACATGTAG	NA	False	NA	NA	False	NA	NA	NA	78908494	78932669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
84562	chr9	-	1864	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	68	0	4	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	15170	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	NA	False	NA	NA	NA	110775158	110768670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
84563	chr6	-	3538	9	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	2300	16	1817	1	3prime_fragment	FALSE	canonical	3	8407	junction_1	544.082470196385	472	125	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122717404	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346
84564	chr5	+	1662	13	NNC	ENSMUSG00000039682.13	novel	795	4	NA	NA	532	-532	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	743.999043271488	2459	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45651399	45669501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45651515_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
84565	chr10	-	2954	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	20	-1015	20	1015	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	14	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATGTAAAAAAATACAAAT	NA	False	NA	NA	False	NA	NA	NA	116899699	116885890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
84566	chr6	-	2011	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	65	9	-65	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	62910	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGGGTTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
84567	chr4	-	2096	19	NNC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	-7	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_16	215.473416480726	70	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	-12	True	NA	NA	False	NA	NA	NA	34614920	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605625_34607130_34607229_34611021_34611077_34614864
84568	chr10	+	880	5	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	153	0	intron_retention	FALSE	canonical	3	6566	junction_4	420.790624895565	32	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	80662679	80665119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664704
84569	chr5	+	2171	10	FSM	ENSMUSG00000019494.15	ENSMUST00000019638.15	1787	10	20	-404	-9	404	multi-exon	FALSE	canonical	3	3954	junction_1	284.410501446999	15750	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGCTGTCTGTCCCTTTT	NA	False	NA	NA	False	NA	NA	NA	138159352	138163312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138159445_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
84570	chrX	-	1804	4	FSM	ENSMUSG00000031422.17	ENSMUST00000164609.8	1811	4	2	5	2	-5	multi-exon	FALSE	canonical	3	42	junction_3	1452.09664508485	16877	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGCAAAAAAAAAAATGTG	NA	False	NA	NA	False	NA	NA	NA	135643665	135633706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135643572
84571	chr9	+	1927	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	270	0	-40	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	18822	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183597	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
84572	chr5	+	1708	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	111955	48	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142889930_142890205_142890540_142890993_142891234_142891320_142891446_142892404
84573	chr14	-	864	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	-43	3	-43	-1	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	8829	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGGACTCTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	55909624	55899722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
84574	chr15	-	1426	9	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	1759	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	639.504104756177	606	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATAGGATCTGGAGAGGT	NA	False	NA	NA	False	NA	NA	NA	51728879	51648194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51648382_51649969_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
84575	chr11	+	3498	8	NIC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	-4	intron_retention	FALSE	canonical	3	3003	junction_1	204.751716247074	29	84	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52278301_52279258
84576	chr12	+	2005	6	NNC	ENSMUSG00000097055.3	novel	1431	4	NA	NA	-26917	-1241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	95	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGCCACGGGGTTTCCTC	NA	False	NA	NA	False	NA	NA	NA	21440406	21467780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21441417_21444965_21445065_21446284_21446449_21448243_21448365_21466797_21467132_21467503
84577	chr4	-	2201	20	NNC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	-1	-6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_15	166.293719388416	91	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	3	True	NA	NA	False	NA	NA	NA	34614905	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598703_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
84578	chr12	+	1592	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	24	2499	24	820	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9189	False	NA	NA	False	NA	NA	NA	100165717	100173574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
84579	chrM	-	2256	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTAACCAGCTATCACCA	9986	False	NA	-1	True	NA	NA	NA	3710	1454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3700
84580	chr7	+	705	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	1	0	1	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1309	False	NA	NA	False	NA	NA	NA	3707036	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
84581	chr11	-	975	1	FSM	ENSMUSG00000081675.2	ENSMUST00000120676.2	801	1	-130	-44	-130	44	mono-exon	FALSE	NA	NA	NA	NA	NA	684	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	72464286	72463311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72463300_72464300
84582	chr10	+	1146	1	FSM	ENSMUSG00000069622.6	ENSMUST00000092511.6	630	1	-140	-376	-140	376	mono-exon	FALSE	NA	NA	NA	NA	NA	2318	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAGACTTTATTGA	1362	False	NA	NA	False	NA	NA	NA	59231436	59232582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59231400_59232600
84583	chr2	+	3049	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	-121	-1017	-121	1017	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	8155	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	143757118	143786261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
84584	chr10	+	1371	9	NNC	ENSMUSG00000006728.13	novel	2053	8	NA	NA	-28916	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1839.54632654359	1934	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGTCTTTATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	126870486	126903153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126870502_126899463_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901134_126901821_126901873_126901969_126902106_126902797
84585	chr6	-	3538	9	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	2300	16	1817	1	3prime_fragment	FALSE	canonical	3	8407	junction_1	544.082470196385	1366	125	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122717404	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346
84586	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
84587	chr17	-	4158	27	NNC	ENSMUSG00000024251.11	novel	2397	11	NA	NA	17	62329	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	16.9620617397042	13	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATTTGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	84773616	84688470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_84688703_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759325_84762036_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771883_84773521
84588	chr4	+	895	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	198	66	-70	3	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	59	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	155916005	155917521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
84589	chr3	-	1429	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	-47	0	24	0	multi-exon	FALSE	canonical	3	68	junction_10	899.425283166979	8343	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	NA	False	NA	NA	NA	89009242	89000894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
84590	chr11	-	1346	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	65	-2	65	2	multi-exon	FALSE	canonical	3	855	junction_5	8144.23656336185	96	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAACTCAGTTGTTTATT	7092	False	NA	NA	False	NA	NA	NA	69811391	69807543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166
84591	chr3	+	1460	6	FSM	ENSMUSG00000005687.15	ENSMUST00000155520.8	737	6	-13	-710	0	5	multi-exon	FALSE	canonical	3	3472	junction_3	182.474107752306	12082	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAATATGTTTTCAT	5023	False	NA	NA	False	NA	NA	NA	103079064	103086473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
84592	chr3	+	6390	12	NNC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	-7	6472	intron_retention	FALSE	non_canonical	0	0	junction_1	482.79641689359	64	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCGCACTTGCCCAACGT	NA	False	NA	NA	False	NA	NA	NA	87826856	87837451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_87827348_87827837_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516_87831219_87831649_87831838_87832199_87832739_87834037_87834181_87834360_87834425_87834869_87835059_87835226
84593	chr14	-	2757	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	197	10	-3	-1	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	2366	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACAAACATTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	47655667	47625245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
84594	chr12	+	1923	8	FSM	ENSMUSG00000097451.12	ENSMUST00000238384.2	2352	8	429	0	0	0	multi-exon	FALSE	canonical	3	549	junction_5	36.3862499259469	1421	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	1330	False	NA	NA	False	NA	NA	NA	109617101	109628150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
84595	chr9	+	4606	8	NNC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	17	2776	intron_retention	FALSE	non_canonical	0	0	junction_6	1007.4652371579	8777	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATCAACATTTGTGTT	9586	False	NA	NA	False	NA	NA	NA	64188905	64215482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208319_64208531_64211588
84596	chr9	+	1676	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	-23	0	-23	0	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	NA	False	NA	NA	NA	108765677	108778691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
84597	chr8	-	4790	6	NNC	ENSMUSG00000093904.3	novel	4902	5	NA	NA	10	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2714.61337210292	9518	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGATAATTTGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	127672580	127657423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_127659879_127659973_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
84598	chrX	-	3334	3	Genic_Genomic	ENSMUSG00000087569.2	novel	2200	1	NA	NA	29	230836	multi-exon	FALSE	non_canonical	0	0	junction_1	0	347	141	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTACTTATTCTTAAGAA	NA	False	NA	NA	False	NA	NA	NA	151274542	151041820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_151041940_151215680_151217156_151272802
84599	chr2	+	974	2	Antisense	novelGene_ENSMUSG00000069188.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	0	32	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTGCTTATTTTATT	8085	False	NA	NA	False	NA	NA	NA	4962760	4965243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4962788_4964296
84600	chr10	+	1643	3	FSM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	4	17	4	-17	multi-exon	FALSE	canonical	3	990	junction_2	137	1636	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAGCATTTCCCAGAGTG	NA	False	NA	NA	False	NA	NA	NA	120062978	120068470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_120063029_120063878_120064109_120067107
84601	chrM	+	854	2	Genic_Genomic	ENSMUSG00000064337.1	novel	955	1	NA	NA	0	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	-3	True	NA	1	True	NA	NA	NA	69	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_77_176
84602	chr8	-	1377	2	Genic_Genomic	ENSMUSG00000109933.2_ENSMUSG00000110313.2	novel	785	1	NA	NA	-41	65	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5802	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCACAACCCAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	11765280	11733393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_11734246_11764755
84603	chr15	-	1172	4	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	0	126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1489.9906785689	210	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTTTTAAATGAAATATGG	4906	False	NA	NA	False	NA	NA	NA	81931799	81925552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81925978_81926055_81926570_81928097_81928219_81931687
84604	chr4	-	4347	18	NIC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	6	-6	intron_retention	FALSE	canonical	3	292	junction_6	97.3134627613368	719	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	21	True	NA	NA	False	NA	NA	NA	34614887	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
84605	chr19	+	748	8	NIC	ENSMUSG00000108414.2	novel	709	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	781	junction_1	132.514920222716	935	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTGTGATGGCTTATT	NA	False	NA	NA	False	NA	NA	NA	8701503	8703806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8701848_8702035_8702086_8702377_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
84607	chr18	-	2726	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	11	8	11	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	276	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649712	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
84608	chr3	+	1439	7	NNC	ENSMUSG00000038374.11	novel	2608	6	NA	NA	0	-886	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	1642.60541687758	48	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTATTGGCCCTTCTCT	8642	False	NA	-70	True	NA	NA	NA	96537255	96540221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004_96539755_96540030
84609	chrX	-	2957	4	Genic_Genomic	ENSMUSG00000087569.2	novel	2200	1	NA	NA	208	230836	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1773	83	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTACTTATTCTTAAGAA	NA	False	NA	NA	False	NA	NA	NA	151274363	151041820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_151041940_151215680_151217008_151272776_151273197_151273272
84610	chr14	+	2021	4	FSM	ENSMUSG00000021963.18	ENSMUST00000128764.9	5125	4	-62	3166	-62	1137	multi-exon	FALSE	canonical	3	2836	junction_1	125.222468697381	170	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGAGTGACTGCCTATC	NA	False	NA	NA	False	NA	NA	NA	58035574	58040929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378
84611	chr11	+	1161	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3737	23	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGACGCGGGCTCTCCG	NA	False	NA	NA	False	NA	NA	NA	33104924	33113075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33105220_33106001_33106106_33106665_33106734_33106974_33107049_33109933_33109996_33110332_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
84612	chrM	+	3225	4	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	182	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12061_12123_12215_12276_13951_14147
84613	chr1	+	713	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	64	192	-2	5	multi-exon	FALSE	canonical	3	545	junction_1	191.904559612324	7306	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATGGAGTCCTGATGCT	NA	False	NA	NA	False	NA	NA	NA	37929621	37937424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
84614	chrX	+	1299	8	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	818.20507882829	13346	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52077009	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
84615	chr6	-	3445	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	5	75859	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4307.11021916087	74	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAGATGGGGTCATAT	8918	False	NA	NA	False	NA	NA	NA	122719476	122628908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122628916_122684297_122684305_122704785_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122714135_122714258_122716791_122716953_122717346_122717440_122719334
84616	chr5	+	1713	7	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15896	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889256_142889429_142889697_142889821_142890005_142890101_142890540_142890993_142891234_142891320_142891446_142892404
84617	chr17	+	1736	7	ISM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	366	139	0	7	intron_retention	FALSE	canonical	3	37	junction_3	6.9860973050449	837	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGACCTTGATTGTTAA	2085	False	NA	NA	False	NA	NA	NA	35482071	35486336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663
84618	chr2	+	649	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	29	6	29	-1	multi-exon	FALSE	canonical	3	1428	junction_1	142.385236438177	6742	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTACTGTGTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	155078483	155092191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
84619	chr18	+	3145	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	-276	22200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	158.489013770111	29649	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCTTTTATCAACAATG	8688	False	NA	NA	False	NA	NA	NA	32970001	33022847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32999045_33022830
84620	SIRV5	+	979	11	NIC	SIRV5A	novel	2085	17	NA	NA	0	3125	combination_of_known_junctions	FALSE	canonical	3	2297	junction_10	2788.04767713897	133	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTCGTTATTG	NA	False	NA	NA	False	NA	NA	NA	1027	6723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658
84621	chr11	+	1162	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17299	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGACGCGGGCTCTCCGC	NA	False	NA	NA	False	NA	NA	NA	33104924	33113076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33105220_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33109999_33110334_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
84622	chr3	-	3236	25	Fusion	ENSMUSG00000027944.14_ENSMUSG00000042520.17	novel	3503	12	NA	NA	398	-1	multi-exon	FALSE	non_canonical	0	0	junction_7	500.714224258708	10562	44	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTTAGTCTTGGTTTTG	8121	False	NA	NA	False	NA	NA	NA	89955208	89902760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834_89905963_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928600_89946228_89946324_89951006_89951118_89952160_89952239_89955076
84623	chr5	-	1263	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1572	3	-46	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	2000	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGACATTCTGAATGCTT	6767	False	NA	NA	False	NA	NA	NA	148989847	148985083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
84624	SIRV6	-	1354	8	Genic_Genomic	SIRV6C_SIRV6B	novel	189	1	NA	NA	-9291	-123	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTCGACTGTCGCTCA	NA	False	NA	NA	False	NA	NA	NA	11838	1667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV6_-_1735_1844_2030_2470_2619_2738_2828_3105_3164_10723_10825_11035_11109_11205
84625	chr17	+	2080	4	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGCCCCACCTTCAC	NA	False	NA	NA	False	NA	NA	NA	47085870	47091163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_47086662_47088971_47089197_47089334_47089446_47090210
84626	chr16	+	1404	5	Genic_Genomic	ENSMUSG00000059150.4	novel	438	1	NA	NA	-51437	10692	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9956	64	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGTCTCCTGCCCCGAAAC	NA	False	NA	NA	False	NA	NA	NA	17478094	17540661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_17478450_17495355_17495591_17516686_17517053_17529486_17529920_17540646
84627	chr5	-	1617	8	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	1862.41190998366	296	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACACAAACAGCTTGTGG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889141_142889230_142889325_142889496_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84628	chr19	+	1853	12	NNC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	823	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	302.893129558734	90584	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAATTTTATACGTAGCAG	NA	False	NA	NA	False	NA	NA	NA	36061115	36083000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735_36082490_36082619
84629	chr18	+	3145	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	-276	22200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	158.489013770111	3980	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCTTTTATCAACAATG	8688	False	NA	NA	False	NA	NA	NA	32970001	33022847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32999045_33022830
84630	chrX	+	1337	8	NNC	ENSMUSG00000025630.9	novel	1289	9	NA	NA	-42	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	818.20507882829	11169	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTTTTGAATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	52076971	52110537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52105200_52105307_52108981_52109029_52109199_52109277_52109943
84631	chr11	-	1795	6	NNC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1129.41383026772	69	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1890	False	NA	NA	False	NA	NA	NA	59119053	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59114604_59114643_59118998
84632	chr5	+	1654	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10494	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142889106	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320_142891446_142892404
84633	chr9	+	1508	8	NNC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	45	8	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	849.465858582886	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATTTGAGTTTCTCACCAT	9614	False	NA	NA	False	NA	NA	NA	64188933	64212082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64189269_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
84634	chr5	+	1638	7	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3416	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889270_142889434_142889636_142889841_142889987_142890086_142890540_142890993_142891234_142891320_142891446_142892404
84635	chr5	-	1811	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	1537.10969752397	21613	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCTTGTGGCTCTGTG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889425_142889499_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84636	chr17	+	3123	13	NNC	ENSMUSG00000091586.3	novel	1693	13	NA	NA	27	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	13.0221499334361	10	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAAATGAGAAATTA	NA	False	NA	NA	False	NA	NA	NA	32725462	32749122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32725553_32725867_32726067_32736867_32737215_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747019_32747086_32747249_32747333_32747690
84637	chr8	-	443	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-6	12	-6	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	149	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	108166217	108165774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
84638	chr2	-	1344	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	4	-32	4	32	mono-exon	FALSE	NA	NA	NA	NA	NA	14639	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTCTTTGGGGGAATTT	7164	False	NA	NA	False	NA	NA	NA	113751482	113750138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_113750100_113751500
84639	chrM	+	949	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	2	4	2	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1103	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCATAGTGTAGCTTAAT	-1	True	NA	3	True	NA	NA	NA	71	1020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_100_1000
84640	chr2	-	1618	15	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-1897	163652	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2155.52300107497	51522	35	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTCTTCTTCCAAACT	9906	False	NA	NA	False	NA	NA	NA	10087218	9897174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_9897182_9904605_9904613_9984344_9984352_10007934_10008169_10060702_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158_10085224_10087061
84641	chr14	-	3218	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	-27	-3	-7	3	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	62462	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTAGTTGGGTAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	36857236	36842045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
84642	chr5	+	1785	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	267999	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888962	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889704_142889841_142890001_142890095_142890540_142890993_142891234_142891320_142891446_142892404
84643	chr2	+	7730	14	FSM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	4	5	4	-5	multi-exon	FALSE	canonical	3	168	junction_11	23.2697075602773	315	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTAGGTGTGTGTATACA	NA	False	NA	NA	False	NA	NA	NA	70886091	70926197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
84644	chr4	+	894	4	NIC	ENSMUSG00000065990.13	novel	773	4	NA	NA	2	3	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	1112.8534894086	231	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGCCGACCTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	155916127	155917521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155916224_155916349_155916528_155916808_155917255_155917347
84645	chr17	+	2237	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	-1939	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	732.756136484407	752	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	29249662	29261871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29249814_29251657_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
84646	chr19	-	735	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	523	3	-39	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	364	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8704	False	NA	NA	False	NA	NA	NA	5416673	5414668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5415187_5415845_5415985_5416595
84647	chr5	+	1827	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889320_142889506_142890001_142890095_142890540_142890993_142891234_142891320_142891446_142892404
84648	chr7	-	1373	11	NNC	ENSMUSG00000006095.13	novel	1416	6	NA	NA	-1115	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	442.495525401105	126	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	29932812	29923561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004_29931301_29931904_29931961_29932173_29932249_29932331_29932407_29932491_29932539_29932705
84649	chr7	-	1339	5	NNC	ENSMUSG00000030744.14	novel	489	6	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5833.37029512099	7985	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGATTAAACTCATGAGTA	8422	False	NA	NA	False	NA	NA	NA	99132858	99127112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128522_99131500_99131562_99131776_99131908_99132798
84650	chr8	+	2368	2	Antisense	novelGene_ENSMUSG00000109617.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11439	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCACCCAGGGAGGACTGC	3578	False	NA	NA	False	NA	NA	NA	13795726	13799251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_13797602_13798758
84651	chrX	-	1803	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	9	13	5	-2	multi-exon	FALSE	canonical	3	47	junction_3	1449.75867723639	266	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAAAAAAAAATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	135644430	135633703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
84652	chr8	-	1377	2	Genic_Genomic	ENSMUSG00000109933.2_ENSMUSG00000110313.2	novel	785	1	NA	NA	-41	65	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17481	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCACAACCCAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	11765280	11733393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_11734246_11764755
84653	chr5	+	1872	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888888	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320_142891446_142892404
84654	chr5	+	366	1	Intergenic	novelGene_916	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTCCCGCACCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	146197788	146198154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
84655	chr6	-	1511	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	58	606	11	-139	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	682	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATGTAATTTTAAACTA	NA	False	NA	NA	False	NA	NA	NA	87828030	87820202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
84656	chr8	-	1377	2	Genic_Genomic	ENSMUSG00000109933.2_ENSMUSG00000110313.2	novel	785	1	NA	NA	-41	65	multi-exon	FALSE	non_canonical	0	0	junction_1	0	554973	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCACAACCCAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	11765280	11733393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_11734246_11764755
84657	chr19	-	3138	4	Antisense	novelGene_ENSMUSG00000011752.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35400	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATCGCCGAGATTCTCT	8472	False	NA	NA	False	NA	NA	NA	41908555	41900457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_41900624_41904041_41904319_41905078_41905262_41906043
84658	chr10	-	3019	14	NNC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	-7	562	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.0242204429517	308	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTAGCCTGGTGGGTG	5699	False	NA	NA	False	NA	NA	NA	4382351	4351352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_4351549_4352193_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
84659	chr5	-	1475	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1944.68452168697	9	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8921	False	NA	NA	False	NA	NA	NA	142892477	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889338_142889518_142889697_142889821_142890010_142890334_142890538_142890991_142891232_142891318_142891448_142892406
84660	chr16	+	4950	3	NNC	ENSMUSG00000097576.3	novel	921	2	NA	NA	-7962	-863	intron_retention	FALSE	non_canonical	0	0	junction_1	0	32	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGGCACCCAAGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	38264381	38272993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38266469_38267612_38267977_38270494
84661	chr5	+	1494	7	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	263	34	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889142_142889536_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320_142891446_142892404
84662	chrM	-	2611	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	106	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	-1	True	NA	5	True	NA	NA	NA	3704	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_3700
84663	chr5	+	1551	7	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	411	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888871	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889189_142889526_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320_142891446_142892404
84664	chr8	-	1377	2	Genic_Genomic	ENSMUSG00000109933.2_ENSMUSG00000110313.2	novel	785	1	NA	NA	-41	65	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3080	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCACAACCCAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	11765280	11733393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_11734246_11764755
84665	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4721	81	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84666	chr13	+	2892	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	14	5	14	-5	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	20933	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAGAATGCTGAGTGGTG	NA	False	NA	NA	False	NA	NA	NA	14787838	14802216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
84667	chr2	-	1221	11	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	-1897	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1369.51858694944	7697	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAGTCTCATTATTAA	9906	False	NA	NA	False	NA	NA	NA	10087218	10060844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158_10085224_10087061
84668	SIRV6	+	1180	7	NNC	SIRV6A	novel	1537	10	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	10896.3894695547	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTAGAAGACCGGGAGTAT	NA	False	NA	NA	False	NA	NA	NA	1087	11822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2764_11256
84669	chr17	-	1755	3	Antisense	novelGene_ENSMUSG00000073430.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_1	6	13149	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCCATCCCTGCAGAAAG	1471	False	NA	NA	False	NA	NA	NA	27545880	27543023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_27544513_27544829_27544999_27545783
84670	chr4	+	2556	10	Antisense	novelGene_ENSMUSG00000028455.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCAGCATTTCCCACAGC	NA	False	NA	NA	False	NA	NA	NA	43026662	43031363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43028288_43028932_43029069_43029280_43029358_43029491_43029634_43029765_43029904_43030047_43030150_43030235_43030299_43030435_43030535_43030969_43031108_43031327
84671	chr12	+	1469	8	FSM	ENSMUSG00000021116.11	ENSMUST00000071230.8	3405	8	247	1689	-19	-1689	multi-exon	FALSE	canonical	3	3896	junction_3	411.382487498445	61	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTAGGCTTCTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78908839	78932095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_78908955_78913299_78913542_78921337_78921418_78923865_78924018_78926724_78926832_78927905_78928004_78930031_78930176_78931564
84672	chr1	-	857	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	19	6404	19	199	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	11	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTCGGGACTTCTCTGC	NA	False	NA	NA	False	NA	NA	NA	135241497	135229354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
84673	chr13	+	2890	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	19	2	19	-2	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	3	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATGCTGAGTGGTGGTT	NA	False	NA	NA	False	NA	NA	NA	14787843	14802219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
84674	chrM	+	842	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	0	-161	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1414	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-11	True	NA	NA	False	NA	NA	NA	7765	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
84675	chr12	+	1359	8	NNC	ENSMUSG00000021243.15	novel	731	8	NA	NA	13	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	997.960491631379	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCTATGTTGTCTCAATT	4726	False	NA	NA	False	NA	NA	NA	85017767	85030073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85017836_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026360_85026791_85027377_85029009_85029105_85029942
84676	chr4	-	1577	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	-32	329	-32	7	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	371	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCTCATTGATTGGGGG	8557	False	NA	NA	False	NA	NA	NA	43031742	43028018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
84677	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84678	chr2	+	1856	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	5	0	1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	24	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
84679	chr7	+	1780	5	NIC	ENSMUSG00000059070.17	novel	1027	6	NA	NA	8	0	intron_retention	FALSE	canonical	3	7563	junction_4	515.404877256706	39	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5930	False	NA	NA	False	NA	NA	NA	45367502	45370255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
84680	chr2	+	1215	2	Genic_Genomic	ENSMUSG00000081434.4	novel	952	1	NA	NA	-82	374	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12344	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152195452	152196860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_152196477_152196669
84681	chr5	-	2310	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	525	3	-525	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	130	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGTTAAATGACTTTCA	6767	False	NA	NA	False	NA	NA	NA	148989847	148984036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
84682	chr7	+	1651	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	32	2	-9	-2	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	6625	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGACTTGTTCCAGTAAGC	NA	False	NA	NA	False	NA	NA	NA	137039374	137070321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
84683	chr7	-	2649	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	52	183	5	-183	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	7210	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCCAGGGATGAACTCGA	NA	False	NA	NA	False	NA	NA	NA	33929709	33900937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
84684	chr5	-	1557	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-4	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	1537.10969752397	37	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	8937	False	NA	NA	False	NA	NA	NA	142892461	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889078_142889384_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
84685	chrM	+	3350	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	89	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84686	chr7	-	2376	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	65	-1001	12	1001	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	6465	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATAGTGCTAATTTTTC	NA	False	NA	NA	False	NA	NA	NA	27749461	27740130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
84687	chr11	-	2008	5	NNC	ENSMUSG00000078812.11	novel	849	6	NA	NA	349	-53	intron_retention	FALSE	non_canonical	0	0	junction_4	9202.26542759988	19	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACACATTTGTTAAAAAT	7376	False	NA	NA	False	NA	NA	NA	69811107	69807598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809979
84688	chr6	-	1606	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	58	-3	0	3	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	72198	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828004	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
84689	chr5	-	1534	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1951.2737720098	30992	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8921	False	NA	NA	False	NA	NA	NA	142892477	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889039_142889394_142889697_142889821_142890004_142890098_142890538_142890987_142891232_142891318_142891448_142892406
84690	chr11	+	3458	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	29	-2445	-7	2445	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	1993	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCCCTCTCTCTCTCTC	NA	False	NA	NA	False	NA	NA	NA	51510590	51516986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
84691	chr3	+	1692	6	FSM	ENSMUSG00000038374.11	ENSMUST00000048915.11	2608	6	7	909	0	-909	multi-exon	FALSE	canonical	3	2531	junction_2	745.762804114016	6	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTAAACTTAACGTTTTT	8642	False	NA	-70	True	NA	NA	NA	96537255	96540198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004
84693	chr2	-	2261	5	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	105	multi-exon	FALSE	canonical	0	0	junction_1	70.7778213849508	13	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAAAAGAAGTTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	156681710	156631626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644081_156679742_156679834_156680337_156680457_156681454
84694	chr5	-	1733	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-13	intron_retention	FALSE	non_canonical	0	0	junction_1	1944.68452168697	4706	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACACAAACAGCTTGTG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889279_142889389_142889697_142889821_142890014_142890142_142890538_142890991_142891232_142891318_142891448_142892406
84695	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	22390	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_10819_11031_11109_11205
84696	chr4	+	2546	9	NNC	ENSMUSG00000028567.9	novel	1359	7	NA	NA	-252203	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	364.614865303103	153	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTATGGTGGCCTTTGG	8216	False	NA	NA	False	NA	NA	NA	108439594	108719317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108440754_108568902_108568971_108691830_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
84697	chr19	-	761	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	-43	-76	-43	76	mono-exon	FALSE	NA	NA	NA	NA	NA	911	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCAAGTTATGCTGGGCGG	NA	False	NA	NA	False	NA	NA	NA	37273238	37272477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_37272500_37273200
84698	chr11	-	2326	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	39	1194	1	-1	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	18036	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9655	False	NA	NA	False	NA	NA	NA	106679319	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
84699	chr19	-	853	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	27	8	-15	-8	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	6979	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCAATCCTTGTGTGGC	4914	False	NA	NA	False	NA	NA	NA	45738003	45736180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
84700	chr15	-	516	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	59	-5	-3	0	multi-exon	FALSE	canonical	3	4307	junction_1	558.07426825548	2209	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	420	False	NA	NA	False	NA	NA	NA	34443309	34440650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
84701	chr16	-	6787	10	Antisense	novelGene_ENSMUSG00000022967.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	70	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCCAGCGCCCCGCCCCT	NA	False	NA	NA	False	NA	NA	NA	91307385	91282125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_91282303_91286581_91286706_91292034_91292192_91292278_91292419_91293029_91293150_91296291_91296492_91296743_91296876_91298507_91298656_91300270_91300416_91301941
84702	chr12	+	1472	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	-7	-88	-7	69	multi-exon	FALSE	canonical	3	2699	junction_7	143.152890295656	7267	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGGCTGAGTGTAGGTA	NA	False	NA	NA	False	NA	NA	NA	87313464	87320841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
84703	chr3	-	1213	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	24	0	24	0	multi-exon	FALSE	canonical	3	1662	junction_9	235.997175124336	9236	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	NA	False	NA	NA	NA	89009242	89000894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
84704	chr5	-	1470	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	5	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1944.68452168697	1134	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8926	False	NA	NA	False	NA	NA	NA	142892472	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889338_142889518_142889697_142889821_142890010_142890334_142890538_142890991_142891232_142891318_142891448_142892406
84705	chr14	+	1844	5	NNC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	-1	1124	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1278.09944350978	3780	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACAGCAGA	NA	False	NA	NA	False	NA	NA	NA	58035673	58040916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378_58040732_58040796
84706	chr10	-	1192	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	308	-17	308	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959509	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
84707	chr17	+	2470	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	-71	11	-71	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	17	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165501	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
84708	chrX	+	3105	3	Genic_Genomic	ENSMUSG00000087235.2	novel	2200	1	NA	NA	-77	56976	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	103	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAACACTCTCTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	151215680	151274648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_151217057_151217132_151217528_151273314
84709	chr1	+	1653	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	469	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTAGGGAAACAATTATTA	NA	False	NA	NA	False	NA	NA	NA	24651851	24653504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24651900_24653500
84710	chr13	-	1295	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	676	0	-676	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	74	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAATTCTGAGTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	64518120	64511703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
84711	chr9	+	2080	4	ISM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	11186	17	11186	-17	3prime_fragment	FALSE	canonical	3	2228	junction_2	214.274486478338	887	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTATTTTGTAAGCAAC	NA	False	NA	NA	False	NA	NA	NA	64200074	64212057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64201415_64201604_64201669_64208323_64208531_64211588
84712	chr11	-	1721	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	-1	80	-1	-80	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	626	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGTATACTTGTTTT	1846	False	NA	NA	False	NA	NA	NA	59119097	59102319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
84713	chrM	+	3095	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	255	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6283	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	251	False	NA	-19	True	NA	NA	NA	11996	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84714	chr2	+	2138	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	235	-423	-183	423	multi-exon	FALSE	canonical	3	2160	junction_3	102.069780052668	322	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCGTGCGCCACCAGCAT	NA	False	NA	NA	False	NA	NA	NA	125089636	125100951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
84715	chr5	+	1005	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	991	-21	-36	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	30	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTCATAAAGACAATAA	NA	False	NA	NA	False	NA	NA	NA	108048416	108055880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
84716	chr7	-	1536	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	-105	9	-105	0	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	59	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTAATTTCTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	27749631	27741140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
84717	chrM	-	766	1	Intergenic	novelGene_4278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAGTAGTTTAATTAGA	0	True	NA	-246	True	NA	NA	NA	16188	15422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrM_-_15400_16200
84718	chr12	+	1476	8	FSM	ENSMUSG00000021134.18	ENSMUST00000094693.11	1527	8	30	21	0	-11	multi-exon	FALSE	canonical	3	1278	junction_1	232.390680904869	4852	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTAAGTATTATAAAACTG	NA	False	NA	NA	False	NA	NA	NA	80992307	80997260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
84719	chr17	+	2517	10	FSM	ENSMUSG00000019432.16	ENSMUST00000173731.8	2848	10	338	-7	212	7	multi-exon	FALSE	canonical	3	2134	junction_3	141.063246475377	636	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCTGTGGTGTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	35461183	35472663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
84720	chrX	+	1003	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	10	6	10	-6	multi-exon	FALSE	canonical	3	2732	junction_2	36	1412	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAATCCAACAGCCCATC	NA	False	NA	NA	False	NA	NA	NA	135145837	135147882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_135145977_135146449_135146516_135147084
84721	chr4	+	3406	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	58	-2329	58	2329	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	51	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTTAAGAATTTGATACA	NA	False	NA	NA	False	NA	NA	NA	63463066	63471316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_63463237_63466821_63466923_63468181
84722	chr2	-	1333	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	4	-21	4	21	mono-exon	FALSE	NA	NA	NA	NA	NA	2	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAAATGGGTTCTT	7164	False	NA	NA	False	NA	NA	NA	113751482	113750149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_113750100_113751500
84723	chr15	-	768	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	118	0	118	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	6974	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	61	False	NA	NA	False	NA	NA	NA	34443668	34440650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
84724	chr10	-	450	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	-7	1089	-7	-1089	multi-exon	FALSE	canonical	3	2101	junction_1	71	1094	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTAATGGCTTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	30076563	30073093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_30073223_30074461_30074576_30076356
84725	chr8	-	1274	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	7	162	7	-162	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	5620	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	117720269	117708710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
84726	chr13	+	4259	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-21	-2	intron_retention	FALSE	non_canonical	0	0	junction_7	582.962168583863	534	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGCCTGTGCTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	3588106	3617869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611863_3612038_3614539_3614685_3614858_3614914_3614995
84727	chr4	-	1977	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	53	8	31	-8	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	20161	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACCCTCGGCCCTGGTTGG	8861	False	NA	NA	False	NA	NA	NA	129436453	129409904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
84728	chr9	+	1914	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	283	0	-27	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183610	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
84729	chr4	+	1748	3	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9899	968	multi-exon	FALSE	non_canonical	0	0	junction_2	47	1555	25	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCGTCATCAGTTAGAT	7462	False	NA	NA	False	NA	NA	NA	145291198	145302699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_145291368_145301002_145301718_145301835
84730	chr2	+	7268	12	Fusion	ENSMUSG00000078906.10_ENSMUSG00000080888.4	novel	919	4	NA	NA	-5485	85923	multi-exon	TRUE	non_canonical	0	0	junction_1	394.875584548763	43614	49	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTACAGAGAGGAACTCG	NA	False	NA	NA	False	NA	NA	NA	174846548	175017634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174846640_174855220_174855276_174858430_174858558_174858749_174858811_174859951_174860224_174930031_174930875_174935057_174935671_174968262_174968353_175007466_175012253_175013386_175013447_175013638_175013817_175017542
84731	chr1	-	5264	8	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	0	7123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2033.89533774429	11465	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGCCGCAGTACAACACCG	7296	False	NA	NA	False	NA	NA	NA	160040445	160022813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160022880_160024513_160024673_160026995_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
84732	chr16	-	2123	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1204	-3	695	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	768	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
84733	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
84734	chr17	-	789	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	-58	24	-58	-24	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	7529	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTGTGTGATAAAAACCAT	NA	False	NA	NA	False	NA	NA	NA	56916829	56914475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
84735	chr4	-	3746	18	NIC	ENSMUSG00000040044.12	novel	2266	20	NA	NA	7736	-6	intron_retention	FALSE	canonical	0	0	junction_14	221.97241014381	1470	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTATACATTGCTTCATT	7751	False	NA	NA	False	NA	NA	NA	34607157	34570801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34598982_34599141_34599703_34599809_34605536_34605682_34607130
84736	chr14	-	2607	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	0	-1045	0	1045	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCAAATTTCTTCAGTTT	1688	False	NA	NA	False	NA	NA	NA	19873892	19860373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
84737	chr9	+	1001	6	FSM	ENSMUSG00000032478.15	ENSMUST00000200091.5	715	6	-8	-278	-3	-19	multi-exon	FALSE	canonical	3	47	junction_2	202.945707025303	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATTCTGCTTCCGAAT	NA	False	NA	NA	False	NA	NA	NA	109661845	109672005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109661957_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
84738	chr7	-	1490	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	57	10	3	-2	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	7097	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCCGTAACTATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	139696332	139685632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
84739	chr11	+	1578	4	NNC	ENSMUSG00000078656.12	novel	615	6	NA	NA	1277	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	585.092015555388	1125	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGTCGGCCTGTTACTA	NA	False	NA	NA	False	NA	NA	NA	101145866	101150369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101146062_101146250_101146924_101147703_101147780_101149735
84740	chr11	-	2779	14	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	67	808	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	695.143423113695	51175	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTGGAGCACTCCTT	5268	False	NA	NA	False	NA	NA	NA	88846224	88814037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88814504_88814562_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
84741	chr12	-	2588	7	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	249	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4831.26134036329	35	120	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATTTATTGTGTGTTCTG	NA	False	NA	NA	False	NA	NA	NA	65120425	65109201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65109507_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65118654
84742	chr14	-	1733	1	FSM	ENSMUSG00000057886.6	ENSMUST00000181108.2	552	1	-75	-1106	-75	1106	mono-exon	FALSE	NA	NA	NA	NA	NA	94	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACCCTCCCAGAAATGGT	NA	False	NA	NA	False	NA	NA	NA	74193066	74191333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_74191300_74193100
84743	chr12	-	1538	8	Antisense	novelGene_ENSMUSG00000021116.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATAGAGTCTTGGTCCTC	NA	False	NA	NA	False	NA	NA	NA	78932091	78908768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_78908949_78913293_78913540_78921335_78921416_78923861_78924018_78926724_78926830_78927903_78928002_78930029_78930174_78931562
84744	chr7	-	1000	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	28	-9	28	9	mono-exon	FALSE	NA	NA	NA	NA	NA	491	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	114305442	114304442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114304400_114305400
84745	chr5	+	1392	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119576.8	5061	4	28	3641	7	40	multi-exon	FALSE	canonical	3	150	junction_2	308.575220435256	3782	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACTCTTACTGTAGAAAC	782	False	NA	NA	False	NA	NA	NA	129792588	129795979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979
84746	chr11	-	3802	11	Fusion	ENSMUSG00000072898.4_ENSMUSG00000048076.15	novel	1800	5	NA	NA	-7	-40	multi-exon	FALSE	non_canonical	0	0	junction_1	1068.95280064182	360	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTATCCGAGGGCCTTATC	1840	False	NA	NA	False	NA	NA	NA	59119103	59099111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_59099500_59099645_59099690_59099792_59099875_59099950_59100025_59100131_59100220_59100798_59100930_59101051_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
84747	chr9	-	2295	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	21	4	0	-4	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	2	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACTTGGGTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100916930	100864088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
84748	chr1	-	721	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-27	-40	-27	40	mono-exon	FALSE	NA	NA	NA	NA	NA	108625	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033790	65033069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
84749	chrM	-	1467	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1393	-5	1393	mono-exon	FALSE	NA	NA	NA	NA	NA	23	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTAAAAGTGCACCTGG	9245	False	NA	NA	False	NA	NA	NA	6943	5476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5500_6900
84750	chr14	+	2056	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	63	1104	13	-8	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	7542	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAATCCTCAGACTCT	NA	False	NA	NA	False	NA	NA	NA	30271150	30295573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
84751	chr11	-	2230	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	14	6	3	-6	multi-exon	FALSE	canonical	3	110	junction_3	12.8	90019	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAATTGGTTCCTACAGA	6315	False	NA	NA	False	NA	NA	NA	45846307	45837675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
84752	chr11	+	1056	4	FSM	ENSMUSG00000057322.13	ENSMUST00000106599.8	457	4	172	-771	155	771	multi-exon	FALSE	canonical	3	12129	junction_3	3589.14031799012	660	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGAAGTAAAGATCTTTCT	NA	False	NA	NA	False	NA	NA	NA	114559606	114563928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_114559641_114559731_114559793_114562559_114562683_114563090
84753	chr2	-	1333	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	4	-21	4	21	mono-exon	FALSE	NA	NA	NA	NA	NA	168	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAAATGGGTTCTT	7164	False	NA	NA	False	NA	NA	NA	113751482	113750149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_113750100_113751500
84754	chr6	-	1387	10	FSM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_4	199.673498924718	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	False	NA	NA	False	NA	NA	NA	34294413	34280868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
84755	chr17	+	1554	10	FSM	ENSMUSG00000019432.16	ENSMUST00000173731.8	2848	10	1297	-3	500	3	multi-exon	FALSE	canonical	3	2134	junction_3	141.063246475377	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35462142	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
84756	chrX	+	1853	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	-43	-742	-43	742	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATAATA	NA	False	NA	NA	False	NA	NA	NA	79500304	79502157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_79500300_79502200
84757	SIRV1	-	1363	6	FSM	SIRV1A	SIRV103	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	14253	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
84758	chr16	+	1132	4	Antisense	novelGene_ENSMUSG00000040681.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACCACCACACGAACTGC	1450	False	NA	NA	False	NA	NA	NA	95922787	95928878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95923618_95925922_95926045_95928351_95928404_95928750
84759	chr17	+	892	7	Antisense	novelGene_ENSMUSG00000024387.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6614	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGAAGTAGGGAGGGGG	NA	False	NA	NA	False	NA	NA	NA	35335175	35340194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35335406_35336675_35336861_35336970_35337048_35337434_35337554_35338732_35338830_35339417_35339506_35340098
84760	chr13	-	866	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	22	0	12	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	261	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453492	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
84761	chr19	+	1118	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	66	1170	5	2	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	349	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540548	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
84762	chr3	-	1877	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	-21	1714	-10	33	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	10608	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAACCTTGTCTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	108352535	108333894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
84763	chr4	+	2511	10	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	-168	-2	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	762.341195768294	11	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTGGTCATGATGTCTG	NA	False	NA	NA	False	NA	NA	NA	118477827	118484971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016_118484204_118484818
84764	chrM	+	733	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	221	1	221	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	-2	True	NA	-23	True	NA	NA	NA	290	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_300_1000
84765	chr17	+	570	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	-12	-13	-12	9	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	16598	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCAGGCTTGCTGCATGAG	NA	False	NA	NA	False	NA	NA	NA	57024754	57029150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
84766	chr9	+	846	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	222	4	0	-4	multi-exon	FALSE	canonical	3	8868	junction_1	0	137	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTGTTTGTGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	108216474	108217538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108216758_108216975
84767	chr1	-	2981	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	-556	5777	-556	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	9325	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86287678	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
84768	chr9	-	2286	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	30	4	-1	-4	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	34	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACTTGGGTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100916921	100864088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
84769	chrX	-	897	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	77	1	19	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	1410	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232923	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
84770	chrM	+	875	1	Intergenic	novelGene_4280	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		12	True	NA	13	True	NA	NA	NA	15424	16299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrM_+_15400_16300
84771	chr11	-	1533	8	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-201	-2	at_least_one_novel_splicesite	FALSE	canonical	3	238	junction_7	10206.1280591213	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCCAACTCAGTTGTT	9740	False	NA	NA	False	NA	NA	NA	69812413	69807547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988_69812161_69812263
84772	chr2	+	1859	2	FSM	ENSMUSG00000086454.8	ENSMUST00000127237.2	707	2	-277	-875	-2	93	multi-exon	FALSE	canonical	3	577	junction_1	0	7063	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	NA	False	NA	NA	NA	104389526	104399270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_104390321_104398205
84773	chr1	+	2466	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000102070.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTTGGAATGGGTAGGC	NA	False	NA	NA	False	NA	NA	NA	24652157	24654623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652200_24654600
84774	chr3	+	2458	7	NNC	ENSMUSG00000038374.11	novel	2608	6	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1643.96218529097	97	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAATTTCTTACTATTCC	8642	False	NA	-70	True	NA	NA	NA	96537255	96541101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004_96539844_96539980
84775	chr14	+	2124	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	-5	1104	-5	-8	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	7649	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAATCCTCAGACTCT	NA	False	NA	NA	False	NA	NA	NA	30271082	30295573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
84776	chr6	-	506	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	4	7	4	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	256	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115785704	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
84777	chr8	+	4319	26	NNC	ENSMUSG00000005481.19	novel	3836	12	NA	NA	22	5204	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1167.77073092281	4040	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCTTGCCTTTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	84441827	84458725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753_84450531_84450606_84450709_84450822_84450992_84451068_84451163_84451248_84451317_84451397_84451630_84451785_84451975_84452492_84452661_84454375_84454597_84454722_84454844_84454912_84455075_84455689_84455764_84455885_84455935_84456012_84456153_84456737_84456887_84458531
84778	chr7	+	1363	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	-36	358	-36	-358	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	314	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAAACTTATAATCGCTG	NA	False	NA	NA	False	NA	NA	NA	137039306	137069965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
84779	chr19	-	1955	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	73	589	-56	-137	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1043	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTGTTCTTGTAGTTTA	NA	False	NA	NA	False	NA	NA	NA	15902350	15882630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
84780	chr9	-	739	1	Antisense	novelGene_ENSMUSG00000062933.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6480	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGGTGCTTCTTATCA	9529	False	NA	NA	False	NA	NA	NA	96778405	96777666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_96777700_96778400
84781	chr11	+	889	4	Antisense	novelGene_ENSMUSG00000016559.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGCCCCCCGACGCCTC	1560	False	NA	NA	False	NA	NA	NA	115913885	115915327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115914364_115914452_115914611_115914713_115914840_115915200
84782	chr9	-	1893	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	38	1	-26	-1	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	8656	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGAGTAGTGCCTTATTT	NA	False	NA	NA	False	NA	NA	NA	110775188	110768671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
84783	chr6	+	1941	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	76	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	9	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684602	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690215_122690402
84784	chrX	-	2281	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	-411	-11	-102	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	11832	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	135642512	135633690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
84785	chr11	+	1080	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	71	101	30	-16	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	7	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTTCATCAAGAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	9068577	9086066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
84786	chrM	+	2560	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-978	0	978	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACATATTTCTTTACC	-3	True	NA	22	True	NA	NA	NA	1093	3653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
84787	chr7	+	1848	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	16	434	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	176.4291642558	6605	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGCCCTTACAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	42827027	42840339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838929_42838982
84788	chr14	+	1797	11	NIC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	686.96809241769	3383	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	NA	False	NA	NA	NA	21881360	21895947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21881513_21881645_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
84789	chr13	-	732	3	Intergenic	novelGene_1489	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	53	junction_2	15	858	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTAAAAGTTCTTCATGCA	NA	False	NA	NA	False	NA	NA	NA	81792393	81784050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_81784533_81785816_81786000_81792326
84790	chr4	-	1191	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	347	336	-5	0	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAACTGTCCTCATTGA	8936	False	NA	NA	False	NA	NA	NA	43031363	43028025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
84791	chr10	-	1011	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	51	-201	51	201	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	14378	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCTTTGAGGAAGGCCAT	NA	False	NA	NA	False	NA	NA	NA	93425517	93418689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
84792	chr7	-	2043	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	116	12	14	-12	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTTGTCTCACTTTCTT	NA	False	NA	NA	False	NA	NA	NA	117728769	117718125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
84793	SIRV3	-	1370	10	Fusion	SIRV3B_SIRV3C	novel	589	3	NA	NA	0	-969	multi-exon	FALSE	non_canonical	0	0	junction_1	545.922053858322	849	39	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATCCAAGTATTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	9914	1969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_4567_4784_6061_6253_7310_7370_7872_7989_8124_8208_8755_8967_9189_9325_9667
84794	chr17	-	809	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	86	802	22	1	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	7638	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAAGCTTTATTCGGTTTG	5538	False	NA	NA	False	NA	NA	NA	66408468	66386434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
84795	chr7	+	2649	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-9	2920	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	109.8939830018	9960	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTATAATCTTACTGAA	NA	False	NA	NA	False	NA	NA	NA	42863471	42879186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135_42877140_42878829
84796	chr9	+	662	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6544.36268554853	37	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400585	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_120400597_120401196_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
84797	chr2	-	854	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	-32	-72	-32	72	mono-exon	FALSE	NA	NA	NA	NA	NA	16790	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATGTGTCAAATGGCAC	NA	False	NA	NA	False	NA	NA	NA	75022198	75021344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75021300_75022200
84798	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15314	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84799	chr13	-	858	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	30	0	-9	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	163	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453484	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
84800	chr12	-	3713	7	NNC	ENSMUSG00000020949.10	novel	1022	7	NA	NA	226	-7	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_6	3753.73714524013	11	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTCTTGACTGACTTAT	NA	False	NA	NA	False	NA	NA	NA	65120448	65109216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65117545
84801	chr16	+	1154	4	Antisense	novelGene_ENSMUSG00000040681.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGAACTGCTGCGACC	1450	False	NA	NA	False	NA	NA	NA	95922787	95928885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95923618_95925922_95926045_95928351_95928409_95928740
84802	chr5	+	1388	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	22	0	1	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104583005	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
84803	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	18434	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
84804	chr14	-	2570	10	NNC	ENSMUSG00000060373.16	novel	1691	9	NA	NA	-113	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1248.36835731909	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCTGTTAGAAGCTG	8612	False	NA	NA	False	NA	NA	NA	52341598	52311007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312094_52312249_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
84805	chr14	-	814	6	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	621	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGACGCGGGCGCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	76085738	76082770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082897_76083056_76083129_76083640_76083834_76084133_76084238_76084681_76084801_76085538
84806	chr3	+	1987	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	-845	325	-845	0	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	288	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATGTGTGGCTATAG	4084	False	NA	NA	False	NA	NA	NA	103078125	103086143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
84807	chr12	-	2112	6	ISM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	224	3411	-42	-2053	5prime_fragment	FALSE	canonical	3	1036	junction_2	139.123542220575	53	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACATTTAAGTTTTTATGT	NA	False	NA	NA	False	NA	NA	NA	4957481	4932442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
84808	chr13	-	1107	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	-17	1	12	0	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	551	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453492	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
84809	chr12	+	675	2	Genic_Genomic	ENSMUSG00000096942.2	novel	438	1	NA	NA	-36	515	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28885	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	110864511	110865500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_110865014_110865327
84810	chr8	-	901	5	FSM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	452	3	-100	-3	multi-exon	FALSE	canonical	3	353	junction_4	97.9030132324843	20622	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCCATGTCTGTATGT	NA	False	NA	NA	False	NA	NA	NA	71326127	71320873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548_71322719_71326102
84811	chr6	-	3639	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	304	16	-51	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	22878	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8994	False	NA	NA	False	NA	NA	NA	122719400	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
84812	chr17	-	1017	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-9481	-15148	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	312.644666514559	31	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAACAAAAAAAA	2987	False	NA	NA	False	NA	NA	NA	6743902	6723948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6743712
84813	chrX	-	1796	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	74	-11	-2	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	2925	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	135642027	135633690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
84814	chr6	-	5355	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	-379	-2420	-379	2420	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	19	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAGAGGCAAAGGGTTTC	8106	False	NA	NA	False	NA	NA	NA	145022289	144942463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
84815	chr13	+	4219	11	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-1	-2	intron_retention	FALSE	non_canonical	0	0	junction_7	582.962168583863	530	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGCCTGTGCTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	3588146	3617869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611863_3612038_3614539_3614685_3614858_3614914_3614995
84816	chr7	-	1380	5	FSM	ENSMUSG00000030869.12	ENSMUST00000123296.8	1416	5	6	30	6	-30	multi-exon	FALSE	canonical	3	4604	junction_1	400.950978923858	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTGGGGAGAACAATAAAAG	6399	False	NA	NA	False	NA	NA	NA	121701068	121689308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
84817	chr5	-	1114	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	161	3929	3	3	multi-exon	FALSE	canonical	3	820	junction_1	20.5	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTTTTTAGATA	3373	False	NA	NA	False	NA	NA	NA	121590408	121582815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_121583636_121585203_121585343_121590253
84818	chr11	-	1656	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	7	330	7	-330	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	162	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915323	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
84819	chr3	+	2881	5	NNC	ENSMUSG00000019710.14	novel	1234	5	NA	NA	5	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	437.719873320826	829	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAACAGAAGTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	87826847	87830968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_87827354_87827845_87829534_87829694_87829799_87830241_87830373_87830516
84820	chr10	+	1246	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	15	0	-2	0	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	25771	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	NA	False	NA	NA	NA	79540339	79547803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
84821	chr11	-	1062	4	FSM	ENSMUSG00000058546.9	ENSMUST00000127270.2	588	4	-477	3	30	0	multi-exon	FALSE	canonical	3	10927	junction_1	3582.37128170713	662	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5993	False	NA	NA	False	NA	NA	NA	78074380	78071760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628
84822	chrM	+	2467	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	canonical	0	0	junction_1	0	3382	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_1933_2082
84823	chr13	+	1875	2	Antisense	novelGene_ENSMUSG00000114759.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1101	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGCGAAGGCTGTGAACAC	NA	False	NA	NA	False	NA	NA	NA	101045542	101083413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_101046404_101082399
84824	chr6	-	3607	10	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3012.29495793162	31836	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8919	False	NA	NA	False	NA	NA	NA	122719475	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714280_122716920_122716953_122717346_122717440_122719334
84825	SIRV3	-	2881	8	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-943	intron_retention	FALSE	non_canonical	0	0	junction_1	637.030483363782	542	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAAGCGCACATAAATTC	NA	False	NA	NA	False	NA	NA	NA	9943	1943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2005_4567_4784_6061_7342_7582_7989_8127_8208_8755_8976_9189_9299_9434
84826	chr18	+	2254	4	FSM	ENSMUSG00000024608.12	ENSMUST00000122279.2	667	4	-1586	-1	-12	0	multi-exon	FALSE	canonical	3	24831	junction_3	1445.1337500576	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	-29	True	NA	NA	NA	60907724	60911618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60909624_60910001_60910164_60910884_60910962_60911502
84827	chr13	-	2104	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1986.9610217719	8517	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4626	False	NA	NA	False	NA	NA	NA	58550455	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
84828	chr12	+	894	6	NNC	ENSMUSG00000037787.15	novel	1065	5	NA	NA	46	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	203.498009818278	5	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAACAAAAGAAT	1612	False	NA	NA	False	NA	NA	NA	111679765	111700629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100_111700218_111700292
84829	chr12	+	2227	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	-83	49	-83	-49	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	284	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758156	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
84830	chr11	+	873	1	Intergenic	novelGene_2467	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	377	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCACAAAGGTCTCTTAG	1576	False	NA	NA	False	NA	NA	NA	96856839	96857712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_96856800_96857700
84831	chr6	-	3717	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	226	16	3	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	27641	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
84832	chr7	-	1596	14	ISM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	3161	-46	-89	45	3prime_fragment	FALSE	canonical	3	2260	junction_4	167.734751156587	5662	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAAGCCTTTATTGGG	2802	False	NA	NA	False	NA	NA	NA	45080886	45071275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743
84833	chr5	-	1228	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	23	-11	-19	11	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	3606	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCCTTCCTGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	117425667	117420707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
84834	chr16	+	554	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	118	5	-28	-5	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	102	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAGGTGGTGCTGATTGA	NA	False	NA	NA	False	NA	NA	NA	55786755	55791793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
84835	chr6	-	2892	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3953.34063293312	10	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709410_122716897_122716953_122717346_122717440_122719334
84836	chr14	-	2468	17	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	0	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	194.137586118067	8	92	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGTTTGTGTCTGAAG	4859	False	NA	NA	False	NA	NA	NA	54754818	54744699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752234_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
84837	chr19	-	893	7	NNC	ENSMUSG00000059734.8	novel	983	7	NA	NA	17	-36	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_6	716.377616127758	5924	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCCCCTTTAGCCCATA	NA	False	NA	NA	False	NA	NA	NA	3962717	3958905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962500
84838	chr14	+	3607	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-11	-1185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2965.53763928229	236	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAATTCAAGTGGAACTT	NA	False	NA	NA	False	NA	NA	NA	63359951	63382187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63367085_63367176_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
84839	chr2	+	2830	13	NNC	ENSMUSG00000068882.14	novel	2001	12	NA	NA	6	1159	intron_retention	FALSE	non_canonical	0	0	junction_12	498.610478953484	6253	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTACAGTGTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	69691972	69703349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465_69702382_69702704
84840	chr19	+	932	7	NIC	ENSMUSG00000108414.2	novel	744	8	NA	NA	0	-3	intron_retention	FALSE	canonical	3	781	junction_1	123.703610833853	491	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTTATTGTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	8701503	8703802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8701554_8701766_8702086_8702377_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
84841	chr14	+	2378	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	84	-540	-13	540	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	13242	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACACACCAGAAGAGGTCAT	NA	False	NA	NA	False	NA	NA	NA	4198712	4202413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
84842	chr7	-	962	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	-45	991	-45	-5	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	29	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8290	False	NA	NA	False	NA	NA	NA	99132990	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
84843	chrM	+	3350	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84844	chr11	+	1861	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	180	443	47	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	451	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940698	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
84845	chr5	-	2234	9	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-175186	-17	intron_retention	TRUE	non_canonical	0	0	junction_6	1995.55455951472	17641	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACCTTACACAAACAGCT	NA	False	NA	NA	False	NA	NA	NA	143067695	142888886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406_142892483_142920768_142920959_143067376_143067393_143067543
84846	chr1	+	1615	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-208	-189	-208	189	mono-exon	FALSE	NA	NA	NA	NA	NA	22921	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACCGTGAACATTTT	NA	False	NA	NA	False	NA	NA	NA	60742882	60744497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60742900_60744500
84847	chr4	-	2649	5	Fusion	ENSMUSG00000029072.4_ENSMUSG00000051557.16	novel	883	4	NA	NA	11	-4033	intron_retention	FALSE	non_canonical	0	0	junction_1	173.218070650842	6	38	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCCTGGAGCTTGGG	9146	False	NA	NA	False	NA	NA	NA	155976172	155947757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_155947765_155965872_155966014_155973470_155975127_155975209_155975697_155975814
84848	chr1	-	2072	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	7	-1515	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	4196	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCTCATCTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	13730763	13695068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695259_13696158_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
84849	chr16	+	1132	4	Antisense	novelGene_ENSMUSG00000040681.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	530	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACACGAACTGCTGCGA	1455	False	NA	NA	False	NA	NA	NA	95922792	95928883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95923618_95925922_95926045_95928351_95928404_95928750
84850	chr17	+	2688	10	NNC	ENSMUSG00000091586.3	novel	2940	13	NA	NA	11606	13	intron_retention	FALSE	canonical	1	2	junction_1	12.7888840621673	4	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAGAAATTACTTAGGAG	6113	False	NA	NA	False	NA	NA	NA	32737097	32749130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32737215_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32747086_32747249_32747338_32747690
84851	chr2	+	1609	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	-68	0	-68	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	112	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8479	False	NA	NA	False	NA	NA	NA	61541969	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
84852	chr2	-	1794	10	NNC	ENSMUSG00000039715.9	novel	1814	9	NA	NA	9	84998	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.8411257827193	467	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGTGTCCACC	NA	False	NA	NA	False	NA	NA	NA	29938884	29836559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29836731_29921739_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
84853	chr15	-	2763	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	293	-934	-25	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	733	False	NA	NA	False	NA	NA	NA	36793788	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
84854	chr4	+	2186	10	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	-21	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	763.586566437915	385	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTGTGCTTATAAGAGG	NA	False	NA	NA	False	NA	NA	NA	118478023	118484955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016_118483258_118483985
84855	chr6	-	3924	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-21	1320	at_least_one_novel_splicesite	FALSE	canonical	3	774	junction_16	87.5050309112717	2557	62	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCTACTCTGGGACCCC	3027	False	NA	NA	False	NA	NA	NA	71885755	71856301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
84856	chr7	+	4369	4	FSM	ENSMUSG00000064194.11	ENSMUST00000202535.4	3112	4	16	-1273	16	1273	multi-exon	FALSE	canonical	3	311	junction_1	65.2226954364813	2464	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGCCCCATTTTTTA	NA	False	NA	NA	False	NA	NA	NA	42827027	42842806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725
84857	chr15	-	3322	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	53	-3	7	3	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	725	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTGTGTTATCCCATGT	862	False	NA	NA	False	NA	NA	NA	11996091	11981421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
84858	chr2	-	1618	12	Antisense	novelGene_ENSMUSG00000002102.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5613	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCGAGGGCTGGGCTGCT	5567	False	NA	NA	False	NA	NA	NA	90889775	90884372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_90884675_90884917_90885002_90885321_90885448_90885800_90885906_90885990_90886055_90886248_90886386_90887000_90887145_90887254_90887404_90888104_90888205_90888352_90888498_90889387_90889472_90889597
84859	chrM	+	5089	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-164	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	151	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	21	False	NA	NA	False	NA	NA	NA	10002	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
84860	chr10	+	9187	6	Genic_Genomic	ENSMUSG00000111551.2	novel	3846	1	NA	NA	-11547	284982	multi-exon	TRUE	non_canonical	0	0	junction_1	0	174	102	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGCAAGATTTTACTGAAA	NA	False	NA	NA	False	NA	NA	NA	49690818	49991193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_49690981_49691056_49693774_49703539_49706274_49714230_49714717_49833862_49833873_49988115
84861	chr5	+	5322	7	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	165	3441	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5691.21391317841	4	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCCAAAGCAAGACAGAAAA	710	False	NA	NA	False	NA	NA	NA	129097500	129104828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837_129103441_129103817
84862	chr1	+	1051	7	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-77	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1207.01455620423	338	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATCACAGCAGTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	63216210	63219643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218808_63219466
84863	chr2	+	4599	12	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	-466	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	3398.17188334556	68	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAATATGGTTCCACTGT	7481	False	NA	NA	False	NA	NA	NA	75489610	75499285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741_75498260_75498344
84864	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	43	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
84865	chrM	+	2546	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2221_2291
84866	chr4	+	2213	2	Genic_Genomic	ENSMUSG00000096354.2	novel	646	1	NA	NA	-14	245373	multi-exon	FALSE	canonical	0	0	junction_1	0	367	49	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAGTGTTTTTTATATTT	2242	False	NA	NA	False	NA	NA	NA	147463371	147709404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_147464385_147708204
84867	chr4	+	2826	11	NNC	ENSMUSG00000028550.16	novel	3178	11	NA	NA	21	-54	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	23.000217390277	10290	83	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATTACCAAGCCAGGATT	NA	False	NA	NA	False	NA	NA	NA	99082404	99147966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99082690_99100813_99100949_99104114_99104199_99106261_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
84868	chrM	-	3913	1	FSM	ENSMUSG00000064343.1	ENSMUST00000082394.1	71	1	-1108	-2734	-1108	2734	mono-exon	FALSE	NA	NA	NA	NA	NA	151	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTACACTATGATTATTC	9980	False	NA	67	True	NA	NA	NA	4950	1037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_1000_5000
84869	chr7	-	1669	16	NIC	ENSMUSG00000003868.15	novel	1834	15	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_15	624.837258812245	5998	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	9084	False	NA	NA	False	NA	NA	NA	45084145	45071321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675_45083781_45084043
84870	chr18	-	541	5	Antisense	novelGene_ENSMUSG00000024608.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGGCGGAAGGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	60911618	60907724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_60907756_60909468_60909624_60910001_60910162_60910882_60910960_60911500
84871	chr19	-	2417	17	NNC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	-6	-13154	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	131.10658831653	3793	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTATTTTGTAAACGAGG	NA	False	NA	NA	False	NA	NA	NA	23251267	23205252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23205260_23207736_23207912_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
84872	chr5	+	1608	13	NNC	ENSMUSG00000028932.9	novel	3466	2	NA	NA	-978	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	505.034129759784	16	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGCTTCCAGATCTCTG	NA	False	NA	NA	False	NA	NA	NA	21989302	22008785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21989361_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
84873	chr1	-	737	2	Genic_Genomic	ENSMUSG00000081201.2	novel	288	1	NA	NA	-19	606	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAGTCCAAA	8603	False	NA	NA	False	NA	NA	NA	14910399	14909486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_14909753_14909928
84874	chr3	-	2104	10	ISM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	3	0	3	0	intron_retention	FALSE	canonical	3	144	junction_9	697.876461528511	31	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	NA	False	NA	NA	NA	89009192	89000894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227
84875	chr19	+	2195	7	NNC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	-12	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	288.953139222724	19141	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCTATCTTTAACTTC	2061	False	NA	NA	False	NA	NA	NA	5417037	5421530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953_5421087_5421154
84876	chr5	-	2112	7	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	-31569	-529	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3727.16463578177	109	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTAGTTAAATGACT	NA	False	NA	NA	False	NA	NA	NA	149021892	148984040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148984486_148984631_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709_148989783_149021875
84877	chr4	-	2215	2	Genic_Genomic	ENSMUSG00000096065.2	novel	646	1	NA	NA	-62	245325	multi-exon	FALSE	canonical	0	0	junction_1	0	136	58	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGCAAAGAACAGAGTTGC	NA	False	NA	NA	False	NA	NA	NA	147709404	147463371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_147464387_147708204
84878	chr4	-	1074	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	35	14	3	-14	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTTGTCAGGCATTTTG	6412	False	NA	NA	False	NA	NA	NA	129494406	129485766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
84879	chr11	-	1610	5	NNC	ENSMUSG00000016559.15	novel	2514	6	NA	NA	3	-334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5882.00448401733	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTAAGTGTCAAACCTA	NA	False	NA	NA	False	NA	NA	NA	115915327	115913120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115913196_115913241_115914362_115914450_115914605_115914707_115914846_115915204
84880	chr2	-	1859	12	Antisense	novelGene_ENSMUSG00000065272.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	343	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCTAGCGCGCTCTGGCG	NA	False	NA	NA	False	NA	NA	NA	130121228	130116365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_130116396_130116552_130116641_130116948_130117064_130117579_130117743_130117893_130118093_130118353_130118543_130118625_130118778_130118950_130119051_130119393_130119542_130119762_130119888_130120072_130120209_130120814
84881	chr12	+	1209	6	NNC	ENSMUSG00000037787.15	novel	1065	5	NA	NA	32	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	249.029636790483	759	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTAAACCAGTGCAAGT	1598	False	NA	NA	False	NA	NA	NA	111679751	111700645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_111679853_111681228_111681395_111689001_111689244_111690773_111690838_111696455_111696547_111700100
84882	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	12257	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
84883	chr11	-	1413	5	NNC	ENSMUSG00000016559.15	novel	2514	6	NA	NA	5	-330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5882.00448401733	51	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915325	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115913668_115913912_115914362_115914450_115914605_115914707_115914846_115915204
84884	chr7	-	2475	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	88	-392	0	392	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	1168	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTCTCATTGTGGT	NA	False	NA	NA	False	NA	NA	NA	117728797	117717721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
84885	chr8	-	4022	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	19	-2269	-11	2265	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	11065	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTATGTCTGAGCACCA	NA	False	NA	NA	False	NA	NA	NA	43759998	43745834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
84886	chr7	+	2721	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	-2049	7	565	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	102	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	3873	False	NA	NA	False	NA	NA	NA	45365445	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
84887	chr8	-	2050	9	FSM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	-107	241	-107	-241	multi-exon	FALSE	canonical	3	1093	junction_6	113.438791314964	6436	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTATTGTGTCTCCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	85573670	85568719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
84888	chr7	+	477	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	229	0	-189	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	577	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACATCCCATCCTTCATTG	1309	False	NA	NA	False	NA	NA	NA	3707036	3709667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
84889	chr7	+	3409	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-9	2915	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	109.8939830018	1879	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATATAATTATAATCTTA	NA	False	NA	NA	False	NA	NA	NA	42863471	42879181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135_42877517_42878441
84890	chr16	+	1900	11	NNC	ENSMUSG00000022884.17	novel	1655	5	NA	NA	-142	0	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_1	614.63599796953	14125	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6735	False	NA	NA	False	NA	NA	NA	22927189	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22927259_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
84891	chrX	-	2763	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	75	10	18	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	180	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921334	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
84892	chr9	+	865	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	21	6	21	-6	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	348	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATAGCTTGGGTGTGGG	1595	False	NA	NA	False	NA	NA	NA	65967533	65973899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
84893	chrM	+	939	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	98	1	98	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	314	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	2	True	NA	-59	True	NA	NA	NA	4011	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_4000_5000
84894	chr4	-	1248	2	Intergenic	novelGene_2120	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3216	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCCTAAAATATATCACT	NA	False	NA	NA	False	NA	NA	NA	146835074	146825438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146825584_146833971
84895	chr19	+	2620	2	Genic_Genomic	ENSMUSG00000118252.2	novel	801	1	NA	NA	-15687	718	multi-exon	FALSE	canonical	2	3	junction_1	0	2851	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGTGTATTAGTCAGGG	NA	False	NA	NA	False	NA	NA	NA	61139999	61157205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_61140397_61154982
84896	chr13	-	2419	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	70	0	-14	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	4818	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGGTCGGCCAACTCCC	NA	False	NA	NA	False	NA	NA	NA	100923008	100915157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
84897	chr7	+	1475	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	492	6	27	-6	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	57	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGATGGCTCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	46497046	46505044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
84898	chr19	+	2260	11	Antisense	novelGene_ENSMUSG00000010095.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4162	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATCTTTAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	8684934	8693267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_8685458_8685556_8685642_8686368_8686508_8686591_8686774_8686912_8686976_8687080_8687147_8689196_8689292_8690092_8690272_8690708_8691116_8691680_8692158_8693223
84899	chrX	-	2325	18	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-3929	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	649.459253378769	3297	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72834432	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380_72830911_72832438_72832558_72832683_72832759_72833404_72833478_72833633_72833725_72833962_72834029_72834257
84900	chr3	+	1339	8	NIC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-50	-2	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	2280.3080618949	78	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTTTGTCTTGCGTC	NA	False	NA	NA	False	NA	NA	NA	88483132	88495724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88483288_88483806_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
84901	chrM	+	6319	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064367.1_ENSMUSG00000064356.1_ENSMUSG00000064370.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	5	580	multi-exon	FALSE	non_canonical	0	0	junction_1	0	80	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	-6	True	NA	NA	False	NA	NA	NA	7770	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12810_12865
84902	chr2	+	1574	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	60	2	14	-2	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	6469	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCCACAGTCTTTCTCAGC	NA	False	NA	NA	False	NA	NA	NA	90884413	90889775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
84903	chr5	+	1442	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-10	87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1142.51473442024	14	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAACTTTTTAAAAAGAGT	746	False	NA	NA	False	NA	NA	NA	77099613	77115247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112299_77114639
84904	chr16	+	3248	20	NNC	ENSMUSG00000022884.17	novel	583	6	NA	NA	-60	13594	intron_retention	FALSE	non_canonical	0	0	junction_1	921.950236307333	3341	6	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGAAAGGCATGGCGGGAG	6152	False	NA	NA	False	NA	NA	NA	22926606	22946480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926721_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916_22932854_22932931_22933054_22933194_22933482_22934123_22934246_22934464_22934609_22936693_22936813_22939657_22939739_22943285_22943365_22946149_22946296_22946436
84905	chr11	+	941	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	64	311	64	297	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	7	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGTCCTGAACCTTG	9019	False	NA	NA	False	NA	NA	NA	120375502	120379580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
84906	chr7	+	3223	9	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	16	364530	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	190.533461628135	1861	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTT	NA	False	NA	NA	False	NA	NA	NA	42827027	43206063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838929_42838982_42840979_42844729_42844944_42863714_42864004_42927551_42927571_43205849
84907	chr16	+	1894	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	12419	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
84908	chr16	-	3017	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	-46	-5	-46	5	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	7963	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGGAGACCTTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	38273111	38264386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
84909	chr10	+	2910	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	-7	23	-7	-23	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	1	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATGTTTTTATTAACA	NA	False	NA	NA	False	NA	NA	NA	128173595	128198325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
84910	chr3	+	2568	6	FSM	ENSMUSG00000038374.11	ENSMUST00000048915.11	2608	6	7	33	0	-33	multi-exon	FALSE	canonical	3	2531	junction_2	745.762804114016	1371	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAATAATAAATAAATCTT	8642	False	NA	-70	True	NA	NA	NA	96537255	96541074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004
84911	chr7	-	1299	7	FSM	ENSMUSG00000030591.18	ENSMUST00000182328.8	1391	7	87	5	16	-5	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	70225	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGATATGAGTGTATCCA	NA	False	NA	NA	False	NA	NA	NA	28879890	28873617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
84912	chr12	-	658	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	-253	-57	-253	57	mono-exon	FALSE	NA	NA	NA	NA	NA	1758	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTGTTCTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	75678345	75677687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_75677700_75678300
84913	chrX	+	2061	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	-25	-1210	19	1196	multi-exon	FALSE	canonical	3	533	junction_2	2270	145	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTGGGTGCCTATCTGA	NA	False	NA	NA	False	NA	NA	NA	135171028	135173923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_135171151_135171558_135171632_135172057
84914	chr16	-	2040	6	NNC	ENSMUSG00000022956.12	novel	838	7	NA	NA	885	1412	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	2499.7210564381	9	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACTCAAACAAAACAGCCT	2109	False	NA	NA	False	NA	NA	NA	91727277	91720689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725813_91725898_91727241
84915	chr4	+	929	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	55	1310	0	240	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	2715	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTGGTGATTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	116542795	116556709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
84916	chr11	-	613	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	398	1	-78	-1	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	107	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCAGTGTTCAGTACTC	NA	False	NA	NA	False	NA	NA	NA	93846687	93840640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
84917	chr14	+	1135	9	FSM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	-8	-10	-8	10	multi-exon	FALSE	canonical	3	49	junction_1	425.971756692859	104	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTATTTTACCACCATTC	NA	False	NA	NA	False	NA	NA	NA	74969815	74987298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
84918	chr14	-	2100	3	Antisense	novelGene_ENSMUSG00000012405.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCAGCTCGGATCCTGCC	NA	False	NA	NA	False	NA	NA	NA	4201862	4198937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_4199416_4199650_4199788_4200377
84919	chr13	-	5901	5	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-181	3468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.621667139346	265	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTAAACAGCTAATGGTAG	NA	False	NA	NA	False	NA	NA	NA	34314630	34307262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34310275_34310316_34312515_34312854_34312966_34313228_34313338_34314159
84920	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	101	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	NA	False	NA	NA	NA	52122863	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
84921	chr6	-	3115	8	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3164.26019338306	20667	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8940	False	NA	NA	False	NA	NA	NA	122719454	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714024_122719424
84922	chr14	-	2576	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	-352	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1725.1813288127	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAAGACCTATTGTTTT	NA	False	NA	NA	False	NA	NA	NA	36857252	36842400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36843016_36843318_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
84923	chr1	-	831	6	NNC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	-8	-798	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	247.823808380067	48	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTGGCTCACAACCATCC	NA	False	NA	NA	False	NA	NA	NA	135358179	135335002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135335085_135336995_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
84924	chr13	+	3860	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	14	-963	14	963	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	653	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACAATTATTTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	14787838	14803184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
84925	chr4	-	2215	2	Genic_Genomic	ENSMUSG00000096065.2	novel	646	1	NA	NA	-62	245325	multi-exon	FALSE	canonical	0	0	junction_1	0	11	58	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGCAAAGAACAGAGTTGC	NA	False	NA	NA	False	NA	NA	NA	147709404	147463371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_147464387_147708204
84926	chr11	+	1171	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-94650	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17708.5	180	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62347346	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62347354_62442331_62442422_62442965
84927	chr4	-	2462	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	49	11	49	-11	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	5171	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137523646	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
84928	chr14	+	1937	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	-3	-1132	-3	-5	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	221	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGACCTATGTTATCTTTT	NA	False	NA	NA	False	NA	NA	NA	4198722	4201868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
84929	chr2	-	1092	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-5	-1011	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4408.33670270035	69887	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCGATCTGTCCTTCAG	3767	False	NA	NA	False	NA	NA	NA	154734720	154714348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714525_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
84930	chr6	-	3149	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	9638	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706340_122706907_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
84931	chr11	+	1357	7	Fusion	ENSMUSG00000017404.13_ENSMUSG00000085897.3	novel	737	6	NA	NA	864	50	multi-exon	FALSE	non_canonical	0	0	junction_5	7530.63511597793	38658	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTCTTTTTATAACAGAA	NA	False	NA	NA	False	NA	NA	NA	97918646	98076983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096_97921106_97943987_97944011_98076122
84932	chr12	+	973	7	FSM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	69	0	49	0	multi-exon	FALSE	canonical	3	2423	junction_5	124.008960249743	11488	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGTGCATCCTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	55445628	55465239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
84933	chr7	-	1848	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	-12	-2	-12	1	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	6198	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTGTGTCCTCAGAG	9170	False	NA	NA	False	NA	NA	NA	45084059	45071319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
84934	chr7	+	2855	4	Intergenic	novelGene_2946	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	80.425258608364	10566	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGGCTTCATAGAATGAA	NA	False	NA	NA	False	NA	NA	NA	42903191	42915277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903292_42910109_42910237_42910431_42910493_42912710
84935	chr5	+	1005	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	991	-21	-36	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	57	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTCATAAAGACAATAA	NA	False	NA	NA	False	NA	NA	NA	108048416	108055880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
84936	chr5	-	657	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	255	3	58	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	40	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2319	False	NA	NA	False	NA	NA	NA	129916056	129909999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
84937	chr7	+	1400	2	NIC	ENSMUSG00000051768.10	novel	2155	17	NA	NA	-72	191	intron_retention	FALSE	canonical	3	432	junction_1	0	13	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGGCTGACCTGCCAAT	NA	False	NA	NA	False	NA	NA	NA	24269054	24270542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_24270352_24270439
84938	chr7	-	2174	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	-242	0	242	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	9	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTGAGTTGTGAAATGAA	NA	False	NA	NA	False	NA	NA	NA	59654859	59632000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
84939	chr11	+	1807	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	13	-73	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	6	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
84940	chr7	-	5797	4	FSM	ENSMUSG00000090744.8	ENSMUST00000073410.12	1430	4	16	-4383	16	4383	multi-exon	FALSE	canonical	3	131	junction_3	48.9285192909003	784	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAATCTGGCTGTACTTTG	NA	False	NA	NA	False	NA	NA	NA	41210237	41190714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_41196224_41197139_41197201_41197407_41197535_41210137
84941	chr3	-	956	6	ISM	ENSMUSG00000027944.14	ENSMUST00000198782.2	855	7	386	-166	359	-2	3prime_fragment	FALSE	canonical	3	1573	junction_5	159.470373424031	406	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAAGGTCTTAGTCTTGG	7884	False	NA	NA	False	NA	NA	NA	89905310	89902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044
84942	chrX	-	1212	4	Antisense	novelGene_ENSMUSG00000016319.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGCTTTGACTCCCGGGCT	NA	False	NA	NA	False	NA	NA	NA	36062457	36059328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36059492_36060492_36060982_36061387_36061530_36062039
84943	chrX	-	956	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	32	2	32	-2	multi-exon	FALSE	canonical	3	951	junction_2	71.6488349909163	903	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCGTTTGCCATTGTAAT	NA	False	NA	NA	False	NA	NA	NA	154121431	154106915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
84944	chr16	-	1078	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	203	-1	-50	1	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	5934	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCGTTTATTTTAATCA	NA	False	NA	NA	False	NA	NA	NA	18695409	18690766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
84945	chrX	-	821	2	Antisense	novelGene_ENSMUSG00000031105.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	786	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCAACAGCATCCCTCA	NA	False	NA	NA	False	NA	NA	NA	47724658	47713131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_47713799_47724504
84947	chr6	+	1105	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	-14	4	-14	-4	multi-exon	FALSE	canonical	3	441	junction_2	10.5	5793	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACCTGATGTTTATGATC	NA	False	NA	NA	False	NA	NA	NA	113581718	113593908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113581858_113592736_113592820_113593025
84948	chr17	-	2468	8	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	-4	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1114.13755425258	30	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCGTTCGCCCAGTCCC	NA	False	NA	NA	False	NA	NA	NA	47093567	47084828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47084958_47085299_47086663_47088972_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093334
84949	chr4	-	1985	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	-220	0	-220	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	179	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	41098403	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
84951	chr5	+	1089	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	221	-22	-221	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	84	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAAACTCCGGTCTGG	NA	False	NA	NA	False	NA	NA	NA	115697573	115701565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
84952	chr18	+	627	1	Intergenic	novelGene_4574	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGTTCACAGGGCGTGGC	NA	False	NA	NA	False	NA	NA	NA	77980831	77981458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_77980800_77981500
84953	chr13	-	2757	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	-53	-733	-53	733	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	107	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACCGTTTGTATGCCCT	NA	False	NA	NA	False	NA	NA	NA	64518173	64510294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
84954	chr1	+	488	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	181	105	-1	-105	multi-exon	FALSE	canonical	3	7281	junction_2	538.928154354136	530	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCCTTTTATAATAAACAGA	NA	False	NA	NA	False	NA	NA	NA	55127471	55130361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
84955	chr7	+	6448	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	16	3406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	176.4291642558	5552	211	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTTCTCCATTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	42827027	42844939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838929_42838982
84956	chr11	-	986	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	249	1946	0	547	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGGCCCAGGCCTGT	634	False	NA	NA	False	NA	NA	NA	93859098	93849750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
84957	chr9	-	767	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	15	-14	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	20	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
84958	chr4	+	4293	9	NNC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	-22	3177	intron_retention	FALSE	non_canonical	0	0	junction_8	78.423131154016	16	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCAGTGAATAAAAGACTG	NA	False	NA	NA	False	NA	NA	NA	149569728	149584302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_149570050_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536_149582875_149583332
84959	chr16	+	1137	4	Antisense	novelGene_ENSMUSG00000040681.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	503	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACCACCACACGAACTGC	1450	False	NA	NA	False	NA	NA	NA	95922787	95928878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95923618_95925922_95926045_95928351_95928409_95928750
84960	chr1	-	2942	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	26	1526	26	-1526	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	43887	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	13730744	13695079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
84961	chr6	-	2877	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3588.65398722139	1164	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712420_122719366
84962	chr6	+	853	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	-14	256	-14	-256	multi-exon	FALSE	canonical	3	441	junction_2	10.5	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTGACTGTGGTGGCA	NA	False	NA	NA	False	NA	NA	NA	113581718	113593656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_113581858_113592736_113592820_113593025
84963	chr5	-	2878	1	Intergenic	novelGene_736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	88313310	88310432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_88310400_88313300
84964	chr17	+	1102	3	Antisense	novelGene_ENSMUSG00000024121.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGATGGGAAGGCGACCCCG	NA	False	NA	NA	False	NA	NA	NA	24382838	24388352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24383582_24383671_24383859_24388180
84965	chr6	+	1713	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	46	-63	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2275.75991429237	20	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGATGAACCGATGCCA	NA	False	NA	NA	False	NA	NA	NA	122684572	122691529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690402_122690491_122690577
84966	chr9	-	1608	2	NIC	ENSMUSG00000038717.10	novel	544	3	NA	NA	33	1	intron_retention	FALSE	canonical	3	4613	junction_1	0	19	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTGTTTTCTCTGTCA	NA	False	NA	NA	False	NA	NA	NA	44831972	44824566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_44826110_44831907
84967	chr4	-	2453	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	65	4	65	-4	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	300	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGAGCTGAGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	137523630	137469047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
84968	chr10	-	635	6	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	2	2	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	1467	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663098	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
84969	chr1	+	988	3	NIC	ENSMUSG00000061518.12	novel	865	4	NA	NA	-27	-3	intron_retention	FALSE	canonical	3	7132	junction_2	45.5	29	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATAGCTGGCTAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	36730663	36732463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_36731366_36731531_36731632_36732277
84970	chrM	+	814	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	28	-161	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	291	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCTATATCTACATGATA	-11	True	NA	NA	False	NA	NA	NA	7765	8579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
84971	chr7	+	3685	8	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-9	15130	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	119.588239132347	2951	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACAGTTGCATATAGGCT	NA	False	NA	NA	False	NA	NA	NA	42863471	42891396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135_42876337_42882321_42882483_42882879_42883032_42884606_42885020_42889926
84972	chr7	+	2697	6	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	16	3406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	194.32282418697	56	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTTCTCCATTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	42827027	42844939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838929_42838982_42840979_42844729
84973	chr7	+	1192	7	NNC	ENSMUSG00000078786.10	novel	1748	7	NA	NA	-8771	-8061	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3245	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCGGTAAGTTCAGAGT	NA	False	NA	NA	False	NA	NA	NA	26886434	26895525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_26886788_26888288_26888382_26888785_26888960_26891029_26891206_26892294_26892468_26894868_26894982_26895415
84974	chr9	+	1576	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	74	3	-7	1	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	638	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGTTGTCCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	108765774	108778688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
84975	chr6	-	3103	5	ISM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	6724	-1	-2622	1	3prime_fragment	FALSE	canonical	3	8407	junction_1	489.921167127937	20069	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122712757	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381
84976	chr2	+	1856	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	5	0	1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	430	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
84977	chr2	-	1093	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	73	0	7	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9577	False	NA	NA	False	NA	NA	NA	10085248	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
84978	chrX	-	1048	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	104	10	0	-10	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	23466	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATATTCAGCCTGAGCAT	NA	False	NA	NA	False	NA	NA	NA	153999341	153996137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
84979	chr6	+	1993	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	19	-824	12	824	multi-exon	FALSE	canonical	3	2472	junction_3	238.868666844356	307	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAGTTTTTTATATCTT	NA	False	NA	NA	False	NA	NA	NA	40448420	40458753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
84980	chrM	+	1328	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	254	0	-254	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGACCTCGATGTTGGATC	-3	True	NA	22	True	NA	NA	NA	1093	2421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2400
84981	chr3	-	3509	11	NNC	ENSMUSG00000068739.14	novel	1866	12	NA	NA	0	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	824.492722830226	3	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTAAGGGTTGCAGCAT	NA	False	NA	NA	False	NA	NA	NA	108352485	108332216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341360_108341524_108343201_108343283_108344824_108344896_108352312
84982	chr1	-	1470	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	678	1	NA	NA	-152	2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	537	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653884	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24652713_24652859
84983	chr11	-	808	1	Intergenic	novelGene_2486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCCCTGGCTGTCCTGG	272	False	NA	NA	False	NA	NA	NA	103001621	103000813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_103000800_103001600
84984	chrM	-	992	1	Antisense	novelGene_ENSMUSG00000064346.1_AS_novelGene_ENSMUSG00000064345.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAAGATTGTGAAGTAGA	9980	False	NA	67	True	NA	NA	NA	4950	3958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_4000_5000
84985	chr5	+	1802	13	FSM	ENSMUSG00000028932.9	ENSMUST00000030769.7	1785	13	-19	2	-19	-2	multi-exon	FALSE	canonical	3	8	junction_1	502.901056095752	24	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTGCTTCCAGATCTC	NA	False	NA	NA	False	NA	NA	NA	21990261	22008783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_21990516_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
84986	chr10	+	1056	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	-42	369	-42	-3	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	5805	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAAACTGTGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	128158285	128163053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
84987	chrM	+	3200	3	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5998	50	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12094_12243_13951_14147
84988	chr6	-	3095	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3013.30654281765	4540	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706499_122708372_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
84989	chr12	-	4444	3	NIC	ENSMUSG00000021131.15	novel	1293	4	NA	NA	-53	-18	intron_retention	FALSE	canonical	3	8000	junction_2	285.5	10	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTATTTTCTCACTGAG	NA	False	NA	NA	False	NA	NA	NA	80690938	80680813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_80681302_80684263_80687819_80690537
84990	chr2	+	1469	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	72	0	6	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8619	False	NA	NA	False	NA	NA	NA	61542109	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
84991	chr7	-	876	6	Antisense	novelGene_ENSMUSG00000006333.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1499	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGACAAGGCGGTTGGA	5826	False	NA	NA	False	NA	NA	NA	3709896	3707040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_3707062_3707323_3707447_3707643_3707766_3708729_3708917_3709004_3709178_3709646
84992	chr15	+	3028	13	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_11	5604.7214248346	21718	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	103148811	103155119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682_103154222_103154772_103154849_103154971
84995	chr14	-	2419	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	6	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1725.1813288127	79	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCTCCCTGATACGT	NA	False	NA	NA	False	NA	NA	NA	36857223	36842763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36843745_36843812_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
84996	chr17	-	1130	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-23408	-15022	at_least_one_novel_splicesite	TRUE	canonical	3	74	junction_4	288.250758888854	53	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCGCTTTGTATACGTGC	NA	False	NA	NA	False	NA	NA	NA	6757829	6723822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6757652
84997	chr1	+	1355	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	227	4	29	-4	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	26342	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTCTGGCTGTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	172327840	172334943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
84998	chr16	-	1496	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	28	-643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2886.14405392385	158	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTGGTTTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	95928901	95922460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928766
84999	chr17	+	1895	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	38	513	-19	-2	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	11885	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCACCTGGGTTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	13135306	13143441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
85000	chr4	+	2641	11	NNC	ENSMUSG00000028550.16	novel	2792	11	NA	NA	101	-54	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	22.8973797627589	2330	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATTACCAAGCCAGGATT	NA	False	NA	NA	False	NA	NA	NA	99082484	99147966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116876_99117724_99117802_99123303_99123424_99146633
85001	chr18	+	1106	8	Antisense	novelGene_ENSMUSG00000024583.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	120	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCGGCCTCAAAACTGAAG	NA	False	NA	NA	False	NA	NA	NA	63797174	63825278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_63797402_63804650_63804758_63807119_63807291_63808512_63808587_63809951_63810073_63812423_63812604_63815284_63815381_63825148
85002	chr7	+	1516	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	-2	19	-2	-1	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	9	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAGGCATGCTAATGGGA	NA	False	NA	NA	False	NA	NA	NA	142606473	142621652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
85003	chr1	-	599	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	88	-6	88	6	mono-exon	FALSE	NA	NA	NA	NA	NA	40	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	24654558	24653959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24654000_24654600
85004	chr3	-	2186	9	ISM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	4	6	4	-6	intron_retention	FALSE	canonical	3	2209	junction_1	106.556323134763	28	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACATCCTGTGGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	89009191	89000900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975
85005	chr14	+	814	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	238	117	0	1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
85006	chr5	+	645	1	Antisense	novelGene_ENSMUSG00000084111.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCATTCCGGCTGGGCGC	NA	False	NA	NA	False	NA	NA	NA	92288120	92288765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92288100_92288800
85007	chr6	-	483	5	FSM	ENSMUSG00000091625.9	ENSMUST00000170382.5	494	5	9	2	0	0	multi-exon	TRUE	canonical	3	1056	junction_2	222.021395365402	9957	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGATTTGATTTATTA	NA	False	NA	NA	False	NA	NA	NA	56681668	56678049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56680298_56680395_56681607
85008	chrM	+	5215	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-290	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19168	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-1	True	NA	NA	False	NA	NA	NA	9876	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85009	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	46516	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	NA	False	NA	NA	NA	52122863	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
85010	chr13	+	633	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	4	11	4	-11	multi-exon	FALSE	canonical	3	1416	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGATGAACTATTTCTT	5982	False	NA	NA	False	NA	NA	NA	54738023	54738960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_54738233_54738536
85011	chr2	+	2507	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	88	1	-10	-1	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	9504	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGGTGTGACTTAGTGG	184	False	NA	NA	False	NA	NA	NA	90677586	90697153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
85012	chr12	-	4999	19	NNC	ENSMUSG00000020949.10	novel	1233	6	NA	NA	15	26082	intron_retention	FALSE	non_canonical	0	0	junction_1	4641.65906642107	33	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATCACACTGCGCACGCG	NA	False	NA	NA	False	NA	NA	NA	65120721	65083115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089582_65090004_65090130_65090777_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102409_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
85013	chr8	+	1594	8	NNC	ENSMUSG00000002395.15	novel	854	8	NA	NA	8	967	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	368.539145873022	12	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTACAATATTCTCATAT	NA	False	NA	NA	False	NA	NA	NA	71819868	71823343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820763_71821490_71821522_71821775_71821948_71822170_71823027_71823242
85014	chr13	-	4775	14	NIC	ENSMUSG00000033102.16	novel	3075	15	NA	NA	-240	-1134	combination_of_known_junctions	FALSE	canonical	3	23	junction_13	17.1357268913424	39	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGTGCCACAATCAAGGG	NA	False	NA	NA	False	NA	NA	NA	64396696	64341492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_64344490_64349145_64349263_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
85015	ERCC-00130	+	1051	1	FSM	ERCC-00130A	EF011072	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41367	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00130_+_0_1100
85016	chr11	+	1553	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	44	29	44	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	9822	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAGTCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653663	120655216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_120653700_120655200
85017	chr7	-	1883	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	239	5	20	1	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	60	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8923	False	NA	NA	False	NA	NA	NA	141941536	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
85018	chr5	+	1096	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	214	-22	-214	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	40	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCGGTCTGGATTTATT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
85019	chrM	+	5967	3	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11440	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12386_12453_13951_14147
85020	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
85021	chr7	-	1951	12	NNC	ENSMUSG00000102252.6	novel	2076	11	NA	NA	-23675	-613	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	898.148738809332	8084	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGGGTTTTTCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	59813642	59632862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59721632_59721737_59781997_59782146_59813179
85022	chrM	+	899	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	138	1	138	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	217	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	42	False	NA	-19	True	NA	NA	NA	4051	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_4100_5000
85023	chr1	+	3984	12	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4473	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAGGTGGCGTCAATGGAG	NA	False	NA	NA	False	NA	NA	NA	20873237	20887592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873875_20875035_20875565_20876022_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882397_20882786_20882918_20883182_20883338_20884621_20885151_20886871_20887003_20887465
85024	chr6	+	1750	6	FSM	ENSMUSG00000029836.16	ENSMUST00000031862.14	1889	6	137	2	1	-2	multi-exon	FALSE	canonical	3	882	junction_5	643.207773584866	10038	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGATGACTTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	51447646	51460682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_51447720_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
85026	chr6	+	1582	9	NIC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-6	384	combination_of_known_junctions	FALSE	canonical	3	210	junction_1	876.96265598941	5936	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTTAAAAACAACAACAG	NA	False	NA	NA	False	NA	NA	NA	86986211	87005827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
85027	chrM	+	5893	3	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4764	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12945_13086_13951_14147
85028	chr11	+	1493	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	-11	422	-11	18	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACACAAAATTGGAGGTC	NA	False	NA	NA	False	NA	NA	NA	107370298	107388577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
85029	chr2	+	4911	16	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	87	2550	intron_retention	FALSE	non_canonical	0	0	junction_13	1657.50963664033	2379	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGACCCAGCCTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	121244450	121271718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066_121269075_121269117_121270500_121270595_121270640_121270714
85030	chr7	-	1169	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	147	20	55	-20	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	2	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGAGGTTTGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	26895523	26886451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
85031	chr1	+	1706	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	29	0	29	0	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	5323	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTCTATTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	171173266	171186822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
85032	chr2	-	6536	9	NNC	ENSMUSG00000090093.9	novel	1911	4	NA	NA	-30	119277	intron_retention	TRUE	non_canonical	0	0	junction_1	23	156	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGCTTGGAACCAGGA	NA	False	NA	NA	False	NA	NA	NA	174983835	174852008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174852114_174858429_174858555_174858746_174858809_174859949_174860128_174930019_174930906_174939233_174939479_174968865_174973563_174974988_174975116_174983724
85033	chr8	-	4204	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-9	845	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	2021.71725685534	119	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCCCAGTCATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	43759996	43747254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43759201_43759877
85034	chrX	+	2625	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	19	-6	0	6	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	40	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTTTCCAGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	104123380	104128798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
85035	chrX	+	2173	17	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-8062	0	intron_retention	FALSE	non_canonical	0	0	junction_1	669.788046581715	3084	7	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	72822571	72834432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72822780_72823073_72823132_72823218_72823318_72823584_72823732_72823820_72823921_72824178_72824637_72824757_72824818_72825281_72825401_72825615_72825710_72826280_72826325_72830382_72830540_72830806_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
85036	chr18	-	2055	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	124	566	0	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	1008	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	NA	False	NA	NA	NA	64649599	64633283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
85037	chrM	+	1626	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-841	-1	-841	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-11	True	NA	NA	False	NA	NA	NA	7765	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9400
85038	chrX	+	1758	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	62	5	-1	-5	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGTTTTTCCTGTCATA	NA	False	NA	NA	False	NA	NA	NA	105230767	105247300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
85039	chr7	-	1454	8	NNC	ENSMUSG00000059277.13	novel	2482	5	NA	NA	-14231	-19517	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26703	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCGCTCGGACCGGGCGCG	NA	False	NA	NA	False	NA	NA	NA	142621654	142606537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_142606800_142616225_142616344_142618944_142619043_142619678_142619751_142619980_142620089_142620396_142620494_142620877_142620970_142621047
85040	chr15	-	3771	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	-10	-2255	-10	2255	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	329	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATCCACAGTCATAACCT	2653	False	NA	NA	False	NA	NA	NA	43146125	43111198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
85041	chr16	+	1894	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	11314	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
85042	chr13	-	2104	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1986.9610217719	11612	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4626	False	NA	NA	False	NA	NA	NA	58550455	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
85043	chr7	-	1077	7	NNC	ENSMUSG00000030587.6	novel	1466	4	NA	NA	753	2491	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	32	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCGGAGAGAAAGGGAAGG	2664	False	NA	-25	True	NA	NA	NA	28947010	28943494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28943728_28943823_28943927_28944017_28944097_28944204_28944262_28945087_28945246_28945324_28945419_28946657
85044	chr19	+	1410	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	48	-54	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	4395	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAATTTGTTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	47720168	47723973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47720261_47721068_47721144_47721288_47721428_47721957_47722351_47723262
85045	chr7	+	3107	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	16	65	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	176.4291642558	3027	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCTCCCCCCCCCCACTC	NA	False	NA	NA	False	NA	NA	NA	42827027	42841598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838929_42838982
85046	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	9888	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
85047	chr11	-	992	8	FSM	ENSMUSG00000091228.2	ENSMUST00000170303.2	991	8	4	-5	4	5	multi-exon	FALSE	canonical	3	110	junction_4	2495.73089372183	36	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	617	False	NA	NA	False	NA	NA	NA	93859115	93840639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93851493_93851607_93854052_93854155_93856633_93856764_93859046
85048	chr4	+	1699	12	Antisense	novelGene_ENSMUSG00000057236.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAATGTTTTTAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	129203307	129228437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129203672_129203814_129203950_129211439_129211552_129211654_129211713_129212236_129212312_129214259_129214344_129215649_129215774_129215871_129216033_129216145_129216260_129216484_129216665_129222382_129222526_129228288
85049	chr4	+	1201	10	Antisense	novelGene_ENSMUSG00000028455.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	410	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCAGCATTTCCCACAGC	NA	False	NA	NA	False	NA	NA	NA	43028018	43031363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43028293_43028936_43029069_43029280_43029358_43029491_43029634_43029765_43029904_43030047_43030150_43030235_43030299_43030435_43030535_43030969_43031108_43031327
85050	chr16	+	4058	10	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-258	-512	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1690.99425059802	7807	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTTGTCAAACTTTAGCA	NA	False	NA	NA	False	NA	NA	NA	84570752	84622304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674_84620395_84620459
85051	chr6	-	3607	10	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3012.29495793162	32	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8919	False	NA	NA	False	NA	NA	NA	122719475	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714280_122716920_122716953_122717346_122717440_122719334
85052	chrM	+	2602	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	15	-1035	15	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1595	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	12	False	NA	37	True	NA	NA	NA	1108	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
85053	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	188	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
85054	chr13	-	3350	5	NIC	ENSMUSG00000021660.15	novel	888	6	NA	NA	5	0	intron_retention	FALSE	canonical	3	5972	junction_2	403.003954695236	11	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453499	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98452807_98453373
85055	chr5	-	2524	8	NNC	ENSMUSG00000029270.11	novel	2721	5	NA	NA	63463	7502	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	114	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTATGTAGCACCACCAG	8817	False	NA	NA	False	NA	NA	NA	108057401	108048416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108048512_108049734_108049804_108049885_108049997_108051129_108051269_108051530_108051732_108052579_108052760_108055053_108055142_108055760
85056	chr6	+	906	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	35	9	-9	-4	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	89	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATATAAATACATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	86986852	87005432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
85057	chr11	-	1265	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	145	223	11	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	3649	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113061	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
85058	chr7	+	2871	4	Intergenic	novelGene_2947	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	80.425258608364	556	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGGGTAGTGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	42903191	42915293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903292_42910109_42910237_42910431_42910493_42912710
85059	chr4	-	7444	30	NNC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	-26148	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	428.914610572898	5592	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	3258	False	NA	NA	False	NA	NA	NA	139106035	139074755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579_139080026_139081468_139081595_139082117_139082187_139082400_139082490_139084803_139084941_139086548_139086676_139087338_139087485_139087762_139087934_139088188_139088262_139088571_139088634_139089404_139089528_139090474_139090573_139090966_139091088_139092502_139092704_139092826_139092977_139093683_139093851_139094406_139094523_139097183_139097322_139098232_139098407_139098904_139099118_139101119_139101201_139102386_139102520_139102655
85060	chr9	+	2381	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	-65	-1105	-39	473	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	8970	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATGGCTGGGAGGTTAGA	9504	False	NA	NA	False	NA	NA	NA	64188823	64213179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
85061	chr6	-	3310	8	NIC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	6	1	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	3377.11934364548	3097	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8919	False	NA	NA	False	NA	NA	NA	122719475	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122716791_122716953_122717346_122717440_122719334
85062	chr6	-	2892	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3953.34063293312	1541	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709410_122716897_122716953_122717346_122717440_122719334
85063	chrX	+	4657	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	215	-2068	16	2068	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	4688	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTTCTTGGCCTTGG	NA	False	NA	-50	True	NA	NA	NA	74139674	74155451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
85064	chr3	+	1173	4	FSM	ENSMUSG00000087260.6	ENSMUST00000145735.6	881	4	-290	-2	-290	-1	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	3569	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGTTCATTTCTGGTC	2720	False	NA	NA	False	NA	NA	NA	107185883	107191397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
85065	chrM	+	3350	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	465	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85066	chr5	-	5588	9	NNC	ENSMUSG00000009013.6	novel	2030	3	NA	NA	4	17376	intron_retention	FALSE	non_canonical	0	0	junction_1	1390.67303287833	12	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCACCTGGGCGCCGCCA	NA	False	NA	NA	False	NA	NA	NA	115438989	115417792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115417972_115421622_115421772_115422446_115422669_115428989_115429096_115432881_115432973_115433722_115433833_115433919_115434037_115434194_115438710_115438890
85067	chr7	+	4380	6	Intergenic	novelGene_2934	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	537	45	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAACCAGCAGTATGGTA	NA	False	NA	NA	False	NA	NA	NA	42307838	42388398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42309206_42309597_42310595_42310693_42312417_42314177_42314238_42314435_42314568_42388297
85068	chr12	-	1668	10	NNC	ENSMUSG00000021266.17	novel	2831	10	NA	NA	13	-1150	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	622.63486317384	306	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGACCTGGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	108860087	108827109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841213_108841577_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
85069	chr4	-	968	1	FSM	ENSMUSG00000046341.6	ENSMUST00000120560.2	450	1	-94	-424	-94	424	mono-exon	FALSE	NA	NA	NA	NA	NA	4495	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTGTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69844410	69843442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_69843400_69844400
85070	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	33	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
85071	chr3	+	1581	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	19	4	0	-4	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	8326	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTACCAAGTATTCAGAAA	4943	False	NA	NA	False	NA	NA	NA	138148872	138161256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
85072	chr11	+	1680	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	88	3	42	-3	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	8	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATATGGTTTTGAGAGGT	NA	False	NA	NA	False	NA	NA	NA	69471272	69482695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
85073	SIRV3	+	781	5	FSM	SIRV3A	SIRV307	779	5	-1	-1	-1	1	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	447	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAACGTCTCGTAAGACG	NA	False	NA	NA	False	NA	NA	NA	1962	8940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
85074	chr7	-	1352	7	FSM	ENSMUSG00000061479.16	ENSMUST00000080356.10	1365	7	13	0	13	0	multi-exon	FALSE	canonical	3	1453	junction_6	315.533102683203	997	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	26895683	26886431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895415
85075	chr17	-	3732	7	NIC	ENSMUSG00000024026.14	novel	1127	8	NA	NA	-17	1610	intron_retention	FALSE	canonical	3	3	junction_6	1202.95216723969	5584	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACTGAGGAGTCATGAGG	NA	False	NA	NA	False	NA	NA	NA	30845800	30810224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441_30831771_30845755
85076	chr11	+	2415	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	-10	26	-10	-26	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	2408	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGAGATTAAAGGAGTGC	NA	False	NA	NA	False	NA	NA	NA	97206531	97220720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
85077	chr4	+	6162	3	ISM	ENSMUSG00000067916.10	ENSMUST00000084149.10	2813	7	42666	-2579	24210	2579	3prime_fragment	FALSE	canonical	1	2	junction_1	43.5	72	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAATCAACAAA	NA	False	NA	NA	False	NA	NA	NA	147259160	147267615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_147260362_147261203_147261331_147262781
85078	chr5	+	1163	1	FSM	ENSMUSG00000079067.6	ENSMUST00000120716.2	279	1	-97	-787	-97	787	mono-exon	FALSE	NA	NA	NA	NA	NA	382	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAGGCTTGGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84271074	84272237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_84271100_84272200
85079	chr14	+	1545	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	-32	0	-32	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	NA	NA	NA	14296715	14303777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
85080	chr14	+	3864	15	NNC	ENSMUSG00000021918.11	novel	2793	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	17.0796453626615	131	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGTGTGTATGGTGTG	NA	False	NA	NA	False	NA	NA	NA	30673414	30710776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889_30686032_30692119_30692522_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068_30709770_30709923
85081	chr17	+	1086	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	3	5	3	-1	multi-exon	FALSE	canonical	3	8303	junction_1	1140.19655651997	380	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTATGTTTTTTTTTGTC	6240	False	NA	NA	False	NA	NA	NA	24939086	24940898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
85082	chr9	+	884	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-22	-64	-22	64	mono-exon	FALSE	NA	NA	NA	NA	NA	1111	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACACATCCTTGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	84306014	84306898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
85083	chr14	+	1143	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-102	-705	-102	705	mono-exon	FALSE	NA	NA	NA	NA	NA	8195	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669335	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
85084	chr1	+	3419	17	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGCCACGGAAGTTTATGG	NA	False	NA	NA	False	NA	NA	NA	20872779	20890512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873878_20875039_20875132_20875486_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882397_20882786_20882918_20883182_20883338_20884621_20884731_20884911_20885151_20886871_20887010_20887472_20887676_20888016_20888129_20890353
85085	chr2	-	1077	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	89	0	6	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9593	False	NA	NA	False	NA	NA	NA	10085232	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
85086	chr15	-	2729	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	123	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	675	False	NA	NA	False	NA	NA	NA	36793846	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771259_36771350_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
85087	chr8	+	4756	23	NNC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-39240	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	448.807881462447	5503	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGAGTATTTTGCCT	NA	False	NA	NA	False	NA	NA	NA	85987020	86034707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85987934_85988618_85988768_85989939_85990183_85990775_85990952_85997320_85997445_86000100_86000254_86001445_86001657_86005332_86005482_86005588_86005686_86007864_86007973_86008467_86008551_86010618_86010836_86012969_86013153_86014324_86014449_86016334_86016431_86021486_86021587_86026083_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
85088	chr11	+	2454	11	Antisense	novelGene_ENSMUSG00000025130.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2308	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAGCCAAGGCGACGAGA	6811	False	NA	NA	False	NA	NA	NA	120451128	120463677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120452086_120452985_120453072_120453187_120453372_120453480_120453602_120454030_120454232_120454428_120454557_120454643_120454747_120458743_120458881_120458998_120459134_120462346_120462556_120463484
85089	chr10	+	776	3	FSM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	-178	-26	14	-1	multi-exon	FALSE	canonical	3	7729	junction_2	373	94	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTGGGTTTTTGTTTTTT	6356	False	NA	NA	False	NA	NA	NA	80128300	80129947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_80128695_80129475_80129711_80129800
85090	chr16	+	2660	10	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	1278	junction_9	320.984942533654	29	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
85091	chr17	+	5833	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3356	-628	-3356	628	mono-exon	FALSE	NA	NA	NA	NA	NA	33	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153887	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
85092	chr3	-	1064	4	ISM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	-12	4774	-12	-1017	5prime_fragment	FALSE	canonical	3	234	junction_2	26.3986531642978	21	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTTTTAATAACTTCAAT	6838	False	NA	NA	False	NA	NA	NA	108819055	108814896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_108815164_108815247_108815400_108815651_108815721_108818479
85093	chr7	-	2700	8	Antisense	novelGene_ENSMUSG00002075127.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1280	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAACCAGCAACATGGCG	NA	False	NA	NA	False	NA	NA	NA	42890410	42827027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_42827127_42836592_42836727_42873329_42873391_42875139_42876335_42882319_42882480_42882877_42883032_42884606_42885018_42889924
85094	chr7	-	906	4	NIC	ENSMUSG00000061787.16	novel	383	5	NA	NA	0	-1	intron_retention	FALSE	canonical	3	8882	junction_3	2020.94301420566	7	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGTCTGTATTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	80994975	80992481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_80992598_80993482_80993549_80994058_80994757_80994949
85095	chr7	-	5179	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	-1	2817	-1	1365	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	6160	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCACATTGAAAACTGAGTA	NA	False	NA	NA	False	NA	NA	NA	110682238	110669773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
85096	chr7	-	833	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	84	991	-3	-5	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8419	False	NA	NA	False	NA	NA	NA	99132861	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
85097	chr16	-	2102	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	-13	1314	-13	585	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	39	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	22084768	22064612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
85098	chr2	-	4013	10	Fusion	ENSMUSG00000082163.3_ENSMUSG00000027635.16	novel	2080	11	NA	NA	-20	881	multi-exon	FALSE	canonical	0	0	junction_4	69.0825235622469	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAATCATGTAATAAAAT	8114	False	NA	NA	False	NA	NA	NA	156849015	156835211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
85099	chr15	-	3512	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	40	-2257	-29	2257	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	44	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTGCTTGCACAATTCAT	NA	False	NA	NA	False	NA	NA	NA	51728879	51647696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
85100	chr11	+	2737	5	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53083	1865	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	129.135587658863	3	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAAACATCCAGGAAGGG	NA	False	NA	NA	False	NA	NA	NA	62402516	62407108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62402636_62402963_62403098_62403729_62404475_62404760_62405717_62406325
85101	chr17	-	2228	3	Antisense	novelGene_ENSMUSG00000099237.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	2	30	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	7592	False	NA	NA	False	NA	NA	NA	27548916	27543055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_27544999_27545783_27545977_27548824
85102	chr7	-	1998	3	Genic_Genomic	ENSMUSG00000046411.3_ENSMUSG00000086583.4	novel	1019	1	NA	NA	-3	18	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	50	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTCATAAAGACAATAA	NA	False	NA	NA	False	NA	NA	NA	114526964	114304486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_114305470_114390442_114390668_114526174
85103	chr2	-	826	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	35	0	35	0	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	449	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	False	NA	NA	False	NA	NA	NA	35939383	35926337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
85104	chrX	-	677	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	-26	0	26	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAGAGGCCCAAGAAC	NA	False	NA	NA	False	NA	NA	NA	151693151	151692474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693200
85105	chr15	+	1744	3	NNC	ENSMUSG00000022463.9	novel	1981	4	NA	NA	78	14	intron_retention	FALSE	non_canonical	0	0	junction_2	375.5	13	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGAAGTGTGACTGTGC	2321	False	NA	NA	False	NA	NA	NA	82031529	82058109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031692_82053938_82054356_82056944
85106	chr17	-	2624	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	-13	-5	3	5	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	8236	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCGTTCGCCCAGTCCCC	NA	False	NA	NA	False	NA	NA	NA	47093595	47084827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
85107	chr1	-	3924	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	33	-1782	33	1782	multi-exon	TRUE	canonical	3	1712	junction_8	135.919976456737	5983	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATCGCTGCAATTGGAAT	NA	False	NA	NA	False	NA	NA	NA	128345063	128289661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
85108	chr11	-	2921	1	Intergenic	novelGene_2258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	106	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGAAGCCCAAAGTAAGAA	5194	False	NA	NA	False	NA	NA	NA	45950284	45947363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_45947400_45950300
85109	chr10	-	2706	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	61	963	-10	-963	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCATGGTCACTGGGAC	NA	False	NA	NA	False	NA	NA	NA	77845580	77823743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
85110	chrM	-	3110	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1218	-1373	-1218	1373	mono-exon	FALSE	NA	NA	NA	NA	NA	4937	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCTCAGCCAATGAAAAG	900	False	NA	60	True	NA	NA	NA	15288	12178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12200_15300
85111	chr19	+	3177	3	FSM	ENSMUSG00000071653.10	ENSMUST00000186647.7	784	3	-512	-1881	-466	1746	multi-exon	FALSE	canonical	3	2965	junction_1	112.5	342	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTTTTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8865750	8869991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8866613_8867366_8867465_8867774
85112	chr16	+	2546	12	NNC	ENSMUSG00000022841.16	novel	2937	12	NA	NA	-42	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1222.79585478498	4943	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAATATAGCTAATCC	1311	False	NA	NA	False	NA	NA	NA	20354185	20363671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359080_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060_20363120_20363569
85113	chrM	+	5044	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-56	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	13	False	NA	NA	False	NA	NA	NA	10110	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13950_14083
85114	chrM	+	2304	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	68	-827	68	827	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	23	False	NA	NA	False	NA	NA	NA	5395	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_7700
85115	chr1	-	3151	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	-172	1515	-172	-1515	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	99	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCTCATCTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	13730942	13695068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
85116	chr1	-	4367	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	24	-1360	24	1360	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	613	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTGTCTCATAATAT	NA	False	NA	NA	False	NA	NA	NA	20890512	20871831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
85117	chr15	+	3253	14	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	-467	-6	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_12	5887.7807997209	21516	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTAACTCCTGTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	103148391	103155113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148545_103148905_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682_103154394_103154772_103154849_103154971
85118	chr7	-	2738	5	NNC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-46232	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	174.005747031528	484	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42388398	42309528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42310987_42311428_42312421_42314181_42314243_42314441_42314569_42388298
85119	chr1	-	2240	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	-65	0	-56	0	multi-exon	FALSE	canonical	3	1712	junction_8	135.919976456737	135	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	128345161	128291443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
85120	chr1	-	2175	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	0	0	0	0	multi-exon	FALSE	canonical	3	1712	junction_8	135.919976456737	87	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	128345096	128291443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
85121	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	109	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
85122	chrX	-	2294	18	Fusion	ENSMUSG00000031388.15_ENSMUSG00000031387.15	novel	1031	8	NA	NA	1	99	multi-exon	FALSE	canonical	0	0	junction_8	675.89444007008	15	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGGACCCCAAATCTGACT	NA	False	NA	NA	False	NA	NA	NA	72974455	72960379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361_72965526_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974426
85123	chrM	-	2745	2	Antisense	novelGene_ENSMUSG00000064346.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4660	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCAGAGTGTTCATTGGT	9980	False	NA	67	True	NA	NA	NA	4950	1096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_3646_4754
85124	chr18	-	2504	16	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1327.22389302718	18	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649586	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633101_64633196_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
85125	chr5	+	2230	8	NNC	ENSMUSG00000058558.13	novel	834	6	NA	NA	-128	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3316.54315976926	67	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGGCATTCTTAATT	NA	False	NA	NA	False	NA	NA	NA	108048611	108056871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048938_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055148_108055762
85126	chrX	-	680	6	Antisense	novelGene_ENSMUSG00000016308.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACTGCCGCTCCGGAGCC	NA	False	NA	NA	False	NA	NA	NA	36146918	36138042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_36138188_36138368_36138444_36138818_36138845_36145308_36145399_36146250_36146339_36146662
85127	chr18	-	1694	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	77	1531	77	-1531	multi-exon	FALSE	canonical	3	1260	junction_1	0	566	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATGTTGTTCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	37777180	37775074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
85128	SIRV6	+	1586	10	FSM	SIRV6A	SIRV612	1528	10	-88	30	-1	-29	multi-exon	TRUE	canonical	0	0	junction_4	7772.9807349673	551	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTTTAGAAGTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	999	11795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
85129	chr11	-	4224	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	-139	-2539	-117	2539	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	4690	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTATTTGGTAGAGAGA	NA	False	NA	NA	False	NA	NA	NA	3216532	3197367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
85130	chr8	+	1555	7	Fusion	ENSMUSG00000096917.3_ENSMUSG00000054717.8	novel	2618	3	NA	NA	6	1280	multi-exon	FALSE	canonical	3	58	junction_1	3371.68536821309	479	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57941093	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_57941228_57943373_57943502_57959561_57959836_57965608_57965783_57966095_57966242_57966323_57966499_57966999
85131	chr9	-	1549	13	Antisense	novelGene_ENSMUSG00000025651.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.6583123951777	26	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGACTGCGGACGCCGCCA	NA	False	NA	NA	False	NA	NA	NA	108778691	108765807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108765855_108766082_108766224_108771150_108771237_108773109_108773240_108773755_108773954_108774424_108774506_108776003_108776120_108776401_108776547_108776664_108776826_108776922_108777017_108777616_108777699_108778003_108778081_108778500
85132	chr6	-	3642	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	301	16	-54	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	176704	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8991	False	NA	NA	False	NA	NA	NA	122719403	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85133	chr10	-	1643	6	Fusion	ENSMUSG00000062981.6_ENSMUSG00000112261.2	novel	3277	4	NA	NA	1	1615	multi-exon	FALSE	non_canonical	0	0	junction_1	2018.02780952097	2658	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCATTAGAAGCACTGGGG	NA	False	NA	NA	False	NA	NA	NA	95336384	95279562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_95279749_95280618_95281620_95326107_95326275_95329492_95329578_95332685_95332750_95336244
85135	chr1	-	2520	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	-31	-1486	-31	1486	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	3601	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCTTATGCTCACATCTG	2279	False	NA	NA	False	NA	NA	NA	93729687	93718811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
85136	chr8	-	2615	4	NNC	ENSMUSG00000051176.7	novel	1744	4	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2029.25936133249	4	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760071	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43758042_43759537
85137	chr5	-	2310	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	525	3	-525	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	54	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGTTAAATGACTTTCA	6767	False	NA	NA	False	NA	NA	NA	148989847	148984036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
85138	chr7	-	1313	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	619	0	-612	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	25295	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGGTTTTTCTTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	59654859	59632861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
85139	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	176	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
85140	chr12	-	3054	6	FSM	ENSMUSG00000020949.10	ENSMUST00000220957.2	1910	6	-1168	24	-1161	-12	multi-exon	FALSE	canonical	3	9641	junction_1	352.767005259846	6	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGGATTGTCTTGACTGA	NA	False	NA	NA	False	NA	NA	NA	65119075	65109221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724
85141	chr12	+	1528	8	FSM	ENSMUSG00000021134.18	ENSMUST00000094693.11	1527	8	-7	6	-7	-2	multi-exon	FALSE	canonical	3	1278	junction_1	232.390680904869	2159	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCTTTTGGTCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	80992270	80997275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80992447_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
85142	chr15	-	842	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	24	797	24	152	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	434	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAACGTCTACTTTTAG	NA	False	NA	NA	False	NA	NA	NA	81756088	81749517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
85143	chrM	-	3110	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1218	-1373	-1218	1373	mono-exon	FALSE	NA	NA	NA	NA	NA	88701	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCTCAGCCAATGAAAAG	900	False	NA	60	True	NA	NA	NA	15288	12178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12200_15300
85144	chr7	+	2639	4	Intergenic	novelGene_2945	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	80.425258608364	9457	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAACAACTCAGTATT	NA	False	NA	NA	False	NA	NA	NA	42903191	42915061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903292_42910109_42910237_42910431_42910493_42912710
85145	chr7	-	2410	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	57	-910	3	910	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	6952	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCCGCCTTCCAGATAAC	NA	False	NA	NA	False	NA	NA	NA	139696332	139684712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
85146	chr11	-	1183	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	227	223	93	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	3316	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33112979	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
85147	chr15	-	2961	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	-45	1089	-45	615	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	3284	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACCAGCTAATCATTTTA	NA	False	NA	NA	False	NA	NA	NA	11399796	11383475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
85148	chr4	+	7783	22	ISM	ENSMUSG00000039852.18	ENSMUST00000105682.9	7728	23	124747	-682	-1	682	3prime_fragment	FALSE	canonical	3	64	junction_2	25.3119315254885	229	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTGTCCAAAAAAATTACA	2443	False	NA	NA	False	NA	NA	NA	150490849	150707105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_150491122_150515979_150516051_150523799_150523926_150553151_150553258_150554751_150554849_150561820_150561926_150584459_150584509_150593286_150593412_150594395_150594496_150619303_150619403_150654672_150654754_150695310_150695474_150696443_150696537_150697003_150697204_150698181_150698344_150698596_150698711_150698933_150700289_150700397_150700621_150701215_150701937_150702862_150703010_150703481_150703663_150703912
85149	chr17	-	1003	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	201	15	-41	-15	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTATAACAAACTGTGAAC	NA	False	NA	NA	False	NA	NA	NA	13135031	13130250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
85150	chrM	+	3505	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	-1461	-900	-1461	900	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTAGTTCCCAAAATATGA	224	False	NA	41	True	NA	NA	NA	12683	16188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12700_16200
85151	chr11	-	1973	11	NNC	ENSMUSG00000018362.15	novel	2054	11	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	974.798933113901	7602	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACTTGCTGTTTTCTT	9743	False	NA	NA	False	NA	NA	NA	106890290	106879460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883520_106887334_106887473_106888063_106888162_106890184
85152	chrM	+	1371	2	Genic_Genomic	ENSMUSG00000064345.1_ENSMUSG00000064341.1	novel	957	1	NA	NA	0	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	788	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	-2	True	NA	109	True	NA	NA	NA	2750	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3920_4748
85153	chr10	+	1409	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	37	-160	0	160	multi-exon	FALSE	canonical	3	1090	junction_2	84.4680835751418	4188	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAGAATTTTGTGAATTA	NA	False	NA	NA	False	NA	NA	NA	7543303	7554805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
85154	chr7	-	4870	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	-35	-1687	-11	1687	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	14553	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTTTCATTAGTAATTTG	NA	False	NA	NA	False	NA	NA	NA	42342177	42307841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
85155	chr6	-	2819	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3588.65398722139	45145	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8919	False	NA	NA	False	NA	NA	NA	122719475	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712412_122719413
85156	chr4	-	2354	13	Genic_Genomic	ENSMUSG00000082860.2	novel	821	1	NA	NA	45	10594	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4670	21	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTAGGGCGGCTCTTCTC	862	False	NA	NA	False	NA	NA	NA	148654288	148642918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_148643034_148644002_148644141_148645468_148645593_148646762_148646867_148647167_148647335_148647476_148647592_148648296_148648372_148648564_148648679_148649054_148649199_148649658_148649851_148650734_148650891_148652821_148652890_148653446
85157	chr7	-	3016	20	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	39	456	-14	-456	intron_retention	FALSE	canonical	3	1924	junction_14	261.383841247645	5613	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165544	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
85158	chr4	-	1270	2	FSM	ENSMUSG00000085241.8	ENSMUST00000141090.8	581	2	-700	11	0	-11	multi-exon	FALSE	canonical	3	959	junction_1	0	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGAATGTCTTTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	132080944	132079255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132079555_132079973
85159	chr8	-	1139	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	410	376	156	-376	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATCTCCCTGCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	46663911	46660209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
85160	chr11	+	593	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	161	568	161	-5	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATGCTGTGTAGTCTT	4118	False	NA	NA	False	NA	NA	NA	100210871	100212354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
85161	chr2	-	1134	7	Antisense	novelGene_ENSMUSG00000008333.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2530	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCACCTGAAGCCGGCGCG	NA	False	NA	NA	False	NA	NA	NA	142913665	142905024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_142905265_142906460_142906549_142907093_142907267_142910178_142910320_142911291_142911343_142912805_142912897_142913315
85162	chr1	+	1288	6	NIC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-5	-15	combination_of_known_junctions	FALSE	canonical	2	237	junction_1	10344.9409278159	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454442	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_86454673_86456496_86456579_86456894_86456967_86457177_86457275_86457452_86457527_86457686
85163	chr14	+	2215	11	NNC	ENSMUSG00000021748.10	novel	1513	10	NA	NA	-32	925	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	775.033263802271	132	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCACAGATTACATGAATC	NA	False	NA	NA	False	NA	NA	NA	14296715	14304702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291_14303857_14304111
85164	chr12	-	8144	18	NNC	ENSMUSG00000020949.10	novel	1233	6	NA	NA	-7	26078	intron_retention	FALSE	non_canonical	0	0	junction_1	3910.67952749672	442	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCGGGATCACACTGCGCA	NA	False	NA	NA	False	NA	NA	NA	65120710	65083119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090130_65090777_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102205_65102306_65102409_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65110550_65112510_65115884_65116724_65116827_65120588
85165	chr2	+	1856	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	5	0	1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	23273	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
85166	SIRV1	-	1874	8	NNC	SIRV1A	novel	1363	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2501.54327876017	1944	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTGAATCGATGCATACT	NA	False	NA	NA	False	NA	NA	NA	11643	1005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1410_6346_6474_6560_6814_7552_7815_10282_10367_10647_10792_10882_11243_11403
85167	chr14	+	1443	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	70	0	7	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	NA	NA	NA	14296817	14303777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
85168	chr9	+	1906	7	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-80	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	562.32780080266	54	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTATTCTCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	108183557	108215134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846_108214794_108214855
85169	chr15	-	2953	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	103	-934	103	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	543	False	NA	NA	False	NA	NA	NA	36793978	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
85170	chr14	-	878	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-21	-65	-21	65	mono-exon	FALSE	NA	NA	NA	NA	NA	2720	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTTATATGAGATTGC	NA	False	NA	NA	False	NA	NA	NA	88361265	88360387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_88360400_88361300
85171	chr4	-	2672	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	57	-912	-44	912	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	1112	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCTTTCAAAATAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	143026077	142993088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
85172	chr5	+	2491	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	84	-530	14	530	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	9013	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCGAATTTCACTGG	NA	False	NA	NA	False	NA	NA	NA	108048451	108057401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
85173	chr6	+	2248	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	30	2	21	0	multi-exon	FALSE	canonical	3	4878	junction_1	99	99	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	NA	False	NA	NA	False	NA	NA	NA	117894284	117902580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
85174	chr18	+	2529	15	Antisense	novelGene_ENSMUSG00000024587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.28769688409428	1	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCTTGACTGAGGCGTT	NA	False	NA	NA	False	NA	NA	NA	64632790	64649574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_64633723_64634375_64634504_64634812_64634946_64636577_64636693_64637408_64637543_64637916_64638114_64638219_64638449_64640841_64640932_64642316_64642386_64643522_64643601_64644679_64644771_64644851_64644949_64645054_64645120_64648395_64648483_64649490
85175	chr17	-	924	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	375	638	8	0	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	601	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2302	False	NA	NA	False	NA	NA	NA	71309174	71301288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
85176	chr6	+	1937	3	ISM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	3872	6	3872	-6	3prime_fragment	FALSE	canonical	3	4116	junction_2	222.5	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122688398	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_122688763_122689587_122689675_122690100
85177	chr7	+	2847	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	16	-165	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	176.4291642558	2510	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAAATATGTCCCAGT	NA	False	NA	NA	False	NA	NA	NA	42827027	42841368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42839859_42839942
85178	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	90	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85179	chr17	+	1652	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	65	22	6	5	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	1165	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCGTGTCTGTGGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	35460786	35472661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
85181	chr6	-	4054	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	56	1	intron_retention	FALSE	canonical	0	0	junction_3	3012.78332001047	516	108	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	9697	False	NA	NA	False	NA	NA	NA	122719823	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709454_122709758_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85182	chrM	-	2455	2	Genic_Genomic	ENSMUSG00000064368.1_ENSMUSG00000064369.1	novel	519	1	NA	NA	-1149	4463	multi-exon	FALSE	canonical	0	0	junction_1	0	4416	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTATGTGGTTTCGTTT	900	False	NA	60	True	NA	NA	NA	15288	9088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_9096_12840
85183	chr7	+	506	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	91	509	-25	-5	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	80	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAATGTTTTGTGCTCATT	2784	False	NA	NA	False	NA	NA	NA	4795963	4797556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
85184	chr7	-	3268	5	Fusion	ENSMUSG00000108446.2_ENSMUSG00000092335.2	novel	1425	4	NA	NA	11	2252	multi-exon	FALSE	non_canonical	0	0	junction_1	102.738746342361	3382	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGTTTTTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	42241960	42226954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_42227070_42227467_42230333_42232070_42232132_42232329_42232457_42241860
85185	chr7	-	2284	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	44	-771	-10	771	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	29	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATCTTATACTGAGATGAA	NA	False	NA	NA	False	NA	NA	NA	139696345	139684851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
85186	chrX	-	1113	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	41	3	23	-3	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	183	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537588	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
85187	chr7	+	1555	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	434	0	-12	0	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	12820	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	140462314	140478555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
85188	chrM	+	885	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	259	0	259	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	107	False	NA	136	True	NA	NA	NA	14403	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
85189	chr18	-	1787	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	-52	1567	-52	-1567	multi-exon	FALSE	canonical	3	1260	junction_1	0	79	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTTATACAATAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	37777309	37775110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
85190	chrM	+	842	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	0	-161	0	mono-exon	FALSE	NA	NA	NA	NA	NA	161	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-11	True	NA	NA	False	NA	NA	NA	7765	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
85191	chr7	+	1244	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	-136	3	-112	-3	multi-exon	FALSE	canonical	3	488	junction_1	365.371993833067	4038	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGCAGCCTCCACTTCTG	5925	False	NA	NA	False	NA	NA	NA	28937641	28946951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
85192	chr14	+	2059	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	60	1104	10	-8	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	7679	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAATCCTCAGACTCT	NA	False	NA	NA	False	NA	NA	NA	30271147	30295573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
85193	chr11	-	1757	5	ISM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	986	3	986	-3	3prime_fragment	FALSE	canonical	3	3182	junction_2	152.739975121119	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGATTGTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	120471220	120468937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007
85194	chr4	+	5371	7	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066007.16	novel	4244	5	NA	NA	17	42982	multi-exon	FALSE	canonical	0	0	junction_1	87.0780301415537	865	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAATCAACAAA	NA	False	NA	NA	False	NA	NA	NA	146093410	146257986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093548_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158
85195	chr6	-	3673	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	4245	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706488_122706531_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85196	chr11	+	1702	12	NNC	ENSMUSG00000020720.14	novel	1904	11	NA	NA	11	-21	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	824.039756723641	7	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCATAGACCATGCAAGG	NA	False	NA	NA	False	NA	NA	NA	107370364	107388978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349_107388624_107388749
85197	SIRV3	-	3049	6	Fusion	SIRV3C_SIRV3D	novel	796	3	NA	NA	0	30	intron_retention	FALSE	non_canonical	0	0	junction_1	690.830225163897	89111	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTTGGATCTTGACAGAA	NA	False	NA	NA	False	NA	NA	NA	9943	4571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_4784_6069_7989_8127_8208_8755_8976_9189_9299_9434
85198	chrX	+	2381	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	-21	-842	-21	842	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	2516	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATATATTTGTATACCG	NA	False	NA	NA	False	NA	NA	NA	99537875	99560573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
85199	chr10	-	2056	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	-338	222	-338	-222	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCAAGGGAGGGTTGTGG	NA	False	NA	NA	False	NA	NA	NA	5755938	5749381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
85200	chrM	+	4569	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064371.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064366.1_ENSMUSG00000064364.1	novel	1824	1	NA	NA	442	19	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCACCACCAGCACCCAAA	4	False	NA	NA	False	NA	NA	NA	10608	15374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13950_14146
85201	chr4	+	3309	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	-16	-2419	-5	729	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	1152	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGATGACATGGGGCACA	NA	False	NA	NA	False	NA	NA	NA	155789575	155819065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
85202	chrX	-	833	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-39	-44	39	mono-exon	FALSE	NA	NA	NA	NA	NA	52	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGCTTTCATTAATAG	NA	False	NA	NA	False	NA	NA	NA	68649895	68649062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68649100_68649900
85203	chr1	-	1603	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	29	1004	29	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTTTTTAAAATTTAATT	821	False	NA	NA	False	NA	NA	NA	175453172	175428943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
85204	chr19	+	1379	2	NNC	ENSMUSG00000025209.6	novel	2195	5	NA	NA	-710	-6337	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1188	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGCGGGACTAACCGGT	948	False	NA	NA	False	NA	NA	NA	44993391	44994864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44994608_44994701
85205	chr7	-	3415	5	Fusion	ENSMUSG00000108446.2_ENSMUSG00000092335.2	novel	1425	4	NA	NA	11	2252	multi-exon	FALSE	non_canonical	0	0	junction_1	102.738746342361	4094	69	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTTGTTTTTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	42241960	42226954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_42229048_42229298_42230333_42232070_42232132_42232329_42232457_42241860
85206	chr15	-	975	3	Antisense	novelGene_ENSMUSG00000077737.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	454	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCACCCCCGCCACTTCC	NA	False	NA	NA	False	NA	NA	NA	5148160	5146126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_5146905_5147100_5147184_5148046
85207	chr7	-	1516	7	FSM	ENSMUSG00000030591.18	ENSMUST00000186182.2	1512	7	-3	-1	-3	1	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	166	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTATCCAGTCTGG	NA	False	NA	NA	False	NA	NA	NA	28880101	28873611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
85208	chr6	+	3990	15	NNC	ENSMUSG00000079426.14	novel	2270	6	NA	NA	-11472	1	intron_retention	FALSE	non_canonical	0	0	junction_1	567.884761233136	5813	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTGTGCTCTGTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	113343603	113366614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113344141_113347181_113347371_113347901_113348009_113349237_113349343_113349425_113349568_113351739_113351837_113351960_113352221_113352800_113353028_113353854_113353907_113354276_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
85209	chr17	+	5832	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3355	-628	-3355	628	mono-exon	FALSE	NA	NA	NA	NA	NA	230	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153888	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
85210	chrM	+	5215	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-290	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-1	True	NA	NA	False	NA	NA	NA	9876	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85211	chr2	-	942	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	106	-2	-19	0	multi-exon	FALSE	canonical	3	1877	junction_6	40.2105569333339	4045	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCCTCTGTGGTGGTTG	NA	False	NA	NA	False	NA	NA	NA	90735065	90724977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
85212	chr9	-	1553	13	Antisense	novelGene_ENSMUSG00000025651.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	1.6583123951777	23	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGGACGCCGCCATCTT	NA	False	NA	NA	False	NA	NA	NA	108778691	108765803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_108765855_108766082_108766224_108771150_108771237_108773109_108773240_108773755_108773954_108774424_108774506_108776003_108776120_108776401_108776547_108776664_108776826_108776922_108777017_108777616_108777699_108778003_108778081_108778500
85213	chr5	+	1836	1	FSM	ENSMUSG00000070697.5	ENSMUST00000090413.6	1629	1	-211	4	-211	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4812	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGTTTGTAATACC	NA	False	NA	NA	False	NA	NA	NA	88702109	88703945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_88702100_88703900
85214	chr3	+	397	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	-35	-41	-35	41	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACG	8266	False	NA	NA	False	NA	NA	NA	145584739	145585136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145584700_145585100
85216	chr7	+	5801	4	Fusion	ENSMUSG00000071952.4_ENSMUSG00000107181.2	novel	378	4	NA	NA	23	2991	multi-exon	FALSE	canonical	3	100	junction_3	9.20144916122817	726	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAATGTTTGATGGCT	NA	False	NA	NA	False	NA	NA	NA	42727497	42752258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_42727598_42741712_42741840_42742038_42742100_42746745
85217	chrX	+	1304	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	89	125	25	-125	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	2387	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGTGGGTATCCGCTGG	NA	False	NA	NA	False	NA	NA	NA	99537985	99559606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
85218	chr9	+	1656	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	-113	0	-91	0	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	2977	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTACATATCTCTTATTT	8467	False	NA	NA	False	NA	NA	NA	73020616	73030615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
85219	chr2	+	1875	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	-3	5	-3	1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	1070	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116346	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
85220	chr17	-	2484	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	136	-1796	-15	1406	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	5595	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	4732	False	NA	NA	False	NA	NA	NA	25492372	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
85221	chr2	-	1956	1	ISM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	18955	5	1885	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	12937	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACATAGTTGCATTATT	NA	False	NA	NA	False	NA	NA	NA	35072177	35070221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_35070200_35072200
85222	chr4	-	3226	1	FSM	ENSMUSG00000065353.3	ENSMUST00000083419.3	205	1	-1108	-1913	-1108	1913	mono-exon	FALSE	NA	NA	NA	NA	NA	896	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCTCTAATGACTGACAA	NA	False	NA	NA	False	NA	NA	NA	132080945	132077719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132077700_132080900
85223	chrM	-	933	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTATGTTTGTCATTAGGTG	-4	True	NA	NA	False	NA	NA	NA	15091	14158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14200_15100
85224	chr1	-	1603	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	29	1004	29	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	4299	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTTTTTAAAATTTAATT	821	False	NA	NA	False	NA	NA	NA	175453172	175428943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
85225	chr7	-	502	5	NIC	ENSMUSG00000008683.17	novel	5179	5	NA	NA	-176	-46	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	4290.87441554749	15	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTTTAAACGTAAAGCA	NA	False	NA	NA	False	NA	NA	NA	117715076	117708332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117714962
85226	chr17	+	2470	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	-71	11	-71	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	15116	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165501	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
85227	chr10	+	499	1	FSM	ENSMUSG00000111356.2	ENSMUST00000216127.2	399	1	-52	-48	-52	48	mono-exon	FALSE	NA	NA	NA	NA	NA	49	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	20084183	20084682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_20084200_20084700
85228	chrM	-	1524	1	Antisense	novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS_novelGene_ENSMUSG00000064358.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTGATGAGACTTTTAG	6804	False	NA	NA	False	NA	NA	NA	9384	7860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7900_9400
85229	chr5	-	3772	9	NNC	ENSMUSG00000025537.13	novel	2374	10	NA	NA	4505	16409	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8817	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTCAGAGCGCATGCGT	NA	False	NA	NA	False	NA	NA	NA	129894423	129875852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129875924_129878735_129878896_129881711_129881826_129882862_129882906_129883525_129883679_129887079_129887134_129888674_129888762_129888909_129889052_129891475
85230	chr15	+	3946	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	-92	0	-92	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	183	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	101982115	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
85231	chr19	+	4377	6	NNC	ENSMUSG00000024841.9	novel	2556	6	NA	NA	-2101	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	392.206884182315	1102	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATTTTTTTTATGAAGAG	7795	False	NA	NA	False	NA	NA	NA	5414667	5421552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5415186_5415844_5415983_5416593_5418559_5418644_5418754_5418922_5418971_5419953
85232	chr5	-	3693	18	NNC	ENSMUSG00000038803.8	novel	1144	3	NA	NA	-28	16527	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	311.188813276844	495	29	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGCGAGGACCCTCGCGCT	NA	False	NA	NA	False	NA	NA	NA	31065160	31046701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31046869_31047462_31047722_31047939_31048113_31048401_31048566_31049154_31049334_31049780_31049955_31050342_31050804_31051242_31051413_31051716_31051853_31052338_31052544_31053109_31053323_31060392_31060549_31062041_31062157_31062449_31062497_31062972_31063105_31063458_31064111_31064742_31064881_31065008
85233	chr6	+	1910	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	220	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	23	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684746	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690255_122690335
85234	chrM	+	726	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	228	1	228	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	5	False	NA	-16	True	NA	NA	NA	297	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_300_1000
85236	chrM	+	2218	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1264	3	-1264	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAATATGTCTGATAAAA	59	False	NA	27	True	NA	NA	NA	1486	3704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3700
85237	chr9	+	683	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	585	3	4	-3	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120401164	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
85238	chr16	+	2314	18	NNC	ENSMUSG00000006998.17	novel	2961	21	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	759.631330176334	1081	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470445	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20470602_20470993_20471051_20471342_20471398_20474295_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
85240	chr1	+	1420	5	NNC	ENSMUSG00000026547.16	novel	1101	2	NA	NA	174	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	497.371779959418	47	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTCTGGCTGTTTCTAG	NA	False	NA	NA	False	NA	NA	NA	172327985	172334943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_172328110_172332686_172332895_172333327_172333503_172333752_172333856_172334133
85241	chrM	-	5246	2	Genic_Genomic	ENSMUSG00000064368.1_ENSMUSG00000064369.1	novel	519	1	NA	NA	-1149	3653	multi-exon	TRUE	canonical	0	0	junction_1	0	4958	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGAAGAAGGTAGATGGC	900	False	NA	60	True	NA	NA	NA	15288	9898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_14589_14732
85242	chr19	-	1818	10	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	7	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	981.770333456008	12946	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGATTGTGACTTTCATCC	NA	False	NA	NA	False	NA	NA	NA	8691236	8684933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691132_8691172
85243	chrM	+	1498	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	118	-71	118	71	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	39	False	NA	NA	False	NA	NA	NA	5445	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_6900
85244	chrM	+	3244	3	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	482	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12111	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	123	False	NA	NA	False	NA	NA	NA	9088	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_9096_11854_13951_14147
85245	chr11	-	1678	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	64	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1252.4809601569	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCCTGTCCCTGCTTCTCT	NA	False	NA	NA	False	NA	NA	NA	120472386	120468987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469041_120469107_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
85246	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	362	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
85247	chr5	-	3204	7	NNC	ENSMUSG00000059866.14	novel	1987	6	NA	NA	-6	1662	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	47.7586525028595	1406	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	34671341	34651768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34651958_34652408_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34660880_34661172_34670962
85248	chr1	-	3183	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	26	1285	26	-1285	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	38087	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAACCATTCCCAAAGC	NA	False	NA	NA	False	NA	NA	NA	13730744	13694838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
85249	chr15	-	1151	4	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	-10	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1489.9906785689	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTTTTAAATGAAATATGGC	4959	False	NA	NA	False	NA	NA	NA	81931746	81925551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81926285_81926331_81926570_81928097_81928219_81931687
85250	chrM	-	916	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7176	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGTAATTTACGTCTCGAC	900	False	NA	60	True	NA	NA	NA	15288	14372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14400_15300
85252	chr9	-	991	6	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-4	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	894.372495104808	4351	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAAAAAGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	21671603	21666741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21666882_21667256_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
85253	chr16	-	1063	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	12	10	12	8	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	1082	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGGACCAGCTGACA	7145	False	NA	NA	False	NA	NA	NA	18066584	18057657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
85254	chrM	+	5089	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-164	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	282090	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	21	False	NA	NA	False	NA	NA	NA	10002	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85255	chr3	+	2030	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	19	-445	0	445	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAGCGCACTAAAGTCTA	4943	False	NA	NA	False	NA	NA	NA	138148872	138161705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
85256	chr14	-	1446	9	FSM	ENSMUSG00000021953.15	ENSMUST00000022522.15	1881	9	324	111	-12	-111	multi-exon	FALSE	canonical	3	2964	junction_2	186.921733286956	9087	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTGAGACTTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	63746217	63729906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63730296_63731190_63731461_63731805_63731897_63733168_63733342_63733438_63733589_63734393_63734465_63735046_63735090_63737569_63737770_63746158
85257	chr10	+	2474	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	-28	10	-28	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	798	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCATAAATTGTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21870536	21875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
85258	chr11	-	3935	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	-22	-354	-22	354	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	23	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAAT	9594	False	NA	NA	False	NA	NA	NA	106679380	106670826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
85259	chr11	+	1228	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	28	184	0	-184	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	283	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTATGTCATCTTTTTA	439	False	NA	NA	False	NA	NA	NA	52122863	52137501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
85260	chr6	-	1558	7	ISM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	4256	-349	-1417	349	3prime_fragment	FALSE	canonical	3	959	junction_4	81.0822627541519	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAGCCTGCTGTTTAA	6433	False	NA	NA	False	NA	NA	NA	113713448	113704673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332
85261	chr4	+	4457	9	NIC	ENSMUSG00000066037.15	novel	2543	10	NA	NA	8	-5	intron_retention	FALSE	canonical	3	289	junction_1	103.204817595886	569	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCACCTATTTCAAATTCA	NA	False	NA	NA	False	NA	NA	NA	136038286	136067987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_136038401_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
85262	chr7	+	3659	4	Antisense	novelGene_ENSMUSG00000094462.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	286	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAACCAGCAACATGGCG	NA	False	NA	NA	False	NA	NA	NA	42226960	42241960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_42230332_42232069_42232127_42232325_42232456_42241859
85263	chr5	+	387	1	Intergenic	novelGene_925	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
85264	chr6	-	3326	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-479	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2093.46237780208	24	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	NA	False	NA	NA	NA	51447353	51438103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438962_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
85265	chr6	+	1340	9	Antisense	novelGene_ENSMUSG00000030298.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3259	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATCTTCCGGTCAGCAACA	2734	False	NA	NA	False	NA	NA	NA	113705031	113717699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_113705420_113706550_113706703_113707294_113707419_113707733_113707869_113711506_113711643_113712019_113712172_113713333_113713449_113714914_113714964_113717610
85266	chr4	-	2597	12	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	-141	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	462.517312608739	11	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGAGTCTTTGTGGTCA	NA	False	NA	NA	False	NA	NA	NA	137512823	137469042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137512606
85267	chr16	-	3278	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24644	-3	-10041	3	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	99	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCATTCCTGCAACCTGCCT	NA	False	NA	NA	False	NA	NA	NA	22230620	22200062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
85268	chrX	+	1976	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	-29	297	-29	39	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	36	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543368	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
85269	chr5	+	1075	5	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	419	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7107.66253331572	2	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAAGCAGCTGCGCAAG	NA	False	NA	NA	False	NA	NA	NA	121343027	121346576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345217_121346453
85270	chrM	+	5215	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	-290	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	274852	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-1	True	NA	NA	False	NA	NA	NA	9876	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85271	chr12	-	3115	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	-64	15	-46	-15	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	4908	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGCATGAAGATGGTTCT	NA	False	NA	NA	False	NA	NA	NA	30961634	30943339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
85272	chr2	-	2382	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-22	-1	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	3	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTAGTGCTCCATTGCTT	3714	False	NA	NA	False	NA	NA	NA	154734773	154713338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
85273	chrX	+	4759	8	NNC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	56	-309	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	905.021930053383	1277	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATGTATATAGTTGTTTGT	5403	False	NA	NA	False	NA	NA	NA	158155229	158172615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403_158169176_158169223
85274	SIRV1	+	1356	6	NNC	SIRV1B	novel	702	3	NA	NA	-9571	-1014	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	68	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGCTCCCTACGTGCTGA	NA	False	NA	NA	False	NA	NA	NA	1011	10592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_+_1485_6337_6472_6558_6813_7551_7813_10280_10365_10442
85275	chrX	-	3105	3	FSM	ENSMUSG00000031422.17	ENSMUST00000131923.2	828	3	-801	-1476	-8	-1	multi-exon	FALSE	canonical	3	2872	junction_1	225.5	37	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAAAAATGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	135642033	135633702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553
85276	chr7	-	1956	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	166	5	-15	1	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	6702	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTATTGGTGTGCTCTGT	8850	False	NA	NA	False	NA	NA	NA	141941609	141929652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
85277	chr15	-	768	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	118	0	118	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	250	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	61	False	NA	NA	False	NA	NA	NA	34443668	34440650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
85278	chrX	+	5218	15	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-4	2068	intron_retention	FALSE	canonical	3	151	junction_1	697.349135173	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTTCTTGGCCTTGG	NA	False	NA	-24	True	NA	NA	NA	74139700	74155451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
85279	chrM	+	5879	3	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	561	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12640_12795_13951_14147
85280	chr17	+	2237	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	-1941	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	732.756136484407	10445	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	29249660	29261871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29249812_29251657_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
85281	chr11	-	3645	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	6	-5	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	1428	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCATTCTCTTCATTTATT	8969	False	NA	NA	False	NA	NA	NA	106680005	106671185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
85282	chr6	-	2890	11	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	17	2702	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1682.35336359518	1	104	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCACAGCCTTCACGATAA	9286	False	NA	NA	False	NA	NA	NA	128415623	128403995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128404445_128406824_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
85283	chr14	+	3163	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	63	-3	13	3	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	8	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTGGAGGATTAGAGGT	NA	False	NA	NA	False	NA	NA	NA	30271150	30296680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
85284	chr14	+	1223	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-182	-705	-182	705	mono-exon	FALSE	NA	NA	NA	NA	NA	8889	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669255	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
85285	chr11	-	6742	33	Fusion	ENSMUSG00000084930.2_ENSMUSG00000020719.15	novel	3559	13	NA	NA	-2822	0	multi-exon	FALSE	non_canonical	0	0	junction_14	2028.25701708234	1611	23	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	5616	False	NA	NA	False	NA	NA	NA	106709656	106671180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524_106680201_106681553_106681684_106683300_106683408_106686945_106687058_106690867_106690968_106692286_106692404_106695817_106695946_106697059_106697255_106700016_106700126_106700451_106700583_106702020_106702173_106703218_106703366_106704590_106704689_106705429_106705562_106706291_106706472_106706562_106706632_106707474_106707630_106708657_106708805_106709019_106709089_106709354
85286	chr4	+	5212	2	Intergenic	novelGene_1841	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGCCATCTGCCCAACCC	NA	False	NA	NA	False	NA	NA	NA	48513841	48519143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_48516377_48516466
85287	chr10	-	627	6	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	-4	2	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	73	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663090	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
85288	SIRV6	+	1267	8	NNC	SIRV6A	novel	1528	10	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8981.3232855289	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGGGAGTATACTTA	NA	False	NA	NA	False	NA	NA	NA	1087	11827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1096_1856_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
85289	chr3	+	1823	11	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	7	156	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	778.974608058568	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATAAAGTTTTATTTATG	NA	False	NA	NA	False	NA	NA	NA	79498678	79511113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337_79510465_79510542
85290	chr6	-	2475	10	Antisense	novelGene_ENSMUSG00000009145.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTCTGGCCAGCGCAAAC	9643	False	NA	NA	False	NA	NA	NA	83044160	83035937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83036090_83036417_83036809_83037150_83037383_83037471_83037569_83037674_83037834_83037913_83038106_83041501_83041625_83041774_83041964_83043068_83043262_83043413
85291	SIRV5	+	4280	16	NNC	SIRV5A	novel	1890	17	NA	NA	993	0	intron_retention	FALSE	non_canonical	0	0	junction_2	3684.52775565909	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	2049	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_2316_3298_3377_3454_3644_5380_5451_5543_5627_6111_6163_6335_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
85292	chrM	+	2499	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3568	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3309_3426
85293	chr3	+	1497	7	NNC	ENSMUSG00000038374.11	novel	2608	6	NA	NA	-9	-940	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1643.96218529097	6	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCTCTCTCCCCAGTG	8666	False	NA	-46	True	NA	NA	NA	96537279	96540167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004_96539856_96539995
85294	chr19	-	1060	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	9	644	9	-636	multi-exon	FALSE	canonical	3	1089	junction_1	76.373351955305	1901	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTGTGCGCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	7183672	7176210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
85295	chr2	+	1261	9	NNC	ENSMUSG00000067847.14	novel	569	3	NA	NA	-11938	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	379.854885943303	20431	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	NA	False	NA	NA	False	NA	NA	NA	155974020	155987714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_155974155_155974550_155974646_155976324_155976478_155981647_155981733_155984045_155984166_155985289_155985379_155985939_155986201_155986378_155986510_155987521
85296	chrX	+	2589	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	215	0	16	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	163	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-50	True	NA	NA	NA	74139674	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
85297	chrM	+	982	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	162	0	162	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	10	False	NA	39	True	NA	NA	NA	14306	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14300_15300
85298	chr4	+	7253	15	NNC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	-20	4884	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	564.579706417047	3722	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGGTCTGAAGGTGGAGC	835	False	NA	NA	False	NA	NA	NA	129083674	129118284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223_129115273_129115609_129118109_129118189
85299	chr4	+	4349	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	68	-1508	68	1508	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	912	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACGCGTATTCTGCTC	781	False	NA	NA	False	NA	NA	NA	129083620	129114908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
85300	chr17	+	5833	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3356	-628	-3356	628	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153887	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
85301	chr8	+	1964	7	NNC	ENSMUSG00000002395.15	novel	1000	8	NA	NA	8	967	intron_retention	FALSE	non_canonical	0	0	junction_4	438.836213435289	149	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTACAATATTCTCATAT	NA	False	NA	NA	False	NA	NA	NA	71819868	71823343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71820014_71820174_71820338_71820413_71820493_71820602_71820763_71821490_71821948_71822170_71823030_71823242
85302	chr7	+	1180	8	NIC	ENSMUSG00000030588.13	novel	1153	8	NA	NA	-14	-12	combination_of_known_junctions	FALSE	canonical	3	150	junction_1	482.335940174142	885	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTCGGCGCAGCCT	6146	False	NA	NA	False	NA	NA	NA	28937862	28946942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
85303	chr13	+	2089	6	NNC	ENSMUSG00000058569.9	novel	1420	5	NA	NA	1	1093	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	262.704092088418	3778	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAGAAAATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	55740971	55746603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653_55745805_55746238
85304	chr7	+	4946	6	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-9	16930	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	114.892297391949	40	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTTACAAGATATGGGG	NA	False	NA	NA	False	NA	NA	NA	42863471	42893196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135_42876337_42884606_42884794_42889926
85306	chr1	+	607	1	Antisense	novelGene_ENSMUSG00000102070.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	262	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTGATCATGGAAATTTAT	NA	False	NA	NA	False	NA	NA	NA	24653959	24654566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24654000_24654600
85307	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	152	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
85308	chr6	+	3668	10	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	109	46	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGGTCACTCCCGGTGGC	8810	False	NA	NA	False	NA	NA	NA	122704783	122718610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708555_122709328_122709432_122709728_122709831_122712378_122712570_122713539_122713701_122714016_122714256_122716794_122716953_122717346_122717435_122718503
85309	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58834	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85310	chr4	-	856	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	20	-43	20	43	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	2074	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCCCAGCAGGTGTCCC	NA	False	NA	NA	False	NA	NA	NA	135780684	135776998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
85311	chr11	+	1727	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	44	0	1	0	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	67628	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	NA	False	NA	NA	NA	69471228	69482698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
85312	chrM	+	3244	3	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	482	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6861	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	123	False	NA	NA	False	NA	NA	NA	9088	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_9096_11854_13951_14147
85313	chr17	+	4222	23	NNC	ENSMUSG00000023938.9	novel	3349	22	NA	NA	0	1116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	59.4366980440549	63	71	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTAAATTTAGCAC	NA	False	NA	NA	False	NA	NA	NA	45817766	45832885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45818008_45818444_45818637_45819406_45819553_45819849_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211_45832528_45832711
85314	chr11	+	1166	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	0	-172	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	10168	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
85315	chr1	-	2054	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	7	-1533	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	84089	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAACAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	13730763	13695086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695259_13696158_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
85316	chrX	+	3294	14	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	16	-1	intron_retention	FALSE	canonical	3	1536	junction_8	506.912011085009	1811	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGAATTTGCTTTTCCT	NA	False	NA	-50	True	NA	NA	NA	74139674	74153382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
85317	chr15	-	2760	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-83	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	135	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	675	False	NA	NA	False	NA	NA	NA	36793846	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771709_36771769_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
85318	chr2	-	3935	8	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	14	-14	intron_retention	FALSE	canonical	3	4406	junction_5	133.764032260285	74	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACAATGAGAAAATCAGTC	9518	False	NA	NA	False	NA	NA	NA	10085307	10060854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
85319	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3262	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256153	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148257100
85320	chr8	+	992	4	Antisense	novelGene_ENSMUSG00000031633.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCGATGCCACCTGCCAGG	NA	False	NA	NA	False	NA	NA	NA	46660351	46663904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_46660660_46661435_46661578_46662059_46662543_46663845
85321	chr6	-	4104	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	18	1	intron_retention	FALSE	non_canonical	0	0	junction_4	3001.09703810103	12799	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	9659	False	NA	NA	False	NA	NA	NA	122719861	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709821_122712364_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85322	chr11	-	2149	7	NNC	ENSMUSG00000037278.10	novel	1375	3	NA	NA	-2175	5400	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	104	5	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGGAAATAGATGCAACAC	NA	False	NA	NA	False	NA	NA	NA	78443778	78427242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78427400_78429332_78429562_78429656_78429789_78430785_78430870_78431718_78431823_78432184_78433614_78443764
85323	chr1	-	1865	11	FSM	ENSMUSG00000006299.14	ENSMUST00000006462.14	1817	11	-54	6	-54	0	multi-exon	FALSE	canonical	3	1233	junction_8	50.6802722960325	3572	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	74323951	74319004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323201_74323661
85324	chr6	-	2410	2	ISM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	11036	-1	1690	1	3prime_fragment	FALSE	canonical	3	8407	junction_1	0	3	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122708445	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351
85325	chr5	-	3420	17	NNC	ENSMUSG00000038803.8	novel	1144	3	NA	NA	17	15768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	319.45538983362	3787	48	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGGGAAAAAAAATCAAAGT	NA	False	NA	NA	False	NA	NA	NA	31065052	31047460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31047722_31047939_31048113_31048401_31048566_31049154_31049334_31049780_31049955_31050342_31050804_31051242_31051413_31051716_31051853_31052338_31052544_31053109_31053323_31060392_31060551_31062044_31062157_31062449_31062498_31062972_31063105_31063458_31064111_31064742_31064881_31065008
85326	chr2	-	1882	12	Antisense	novelGene_ENSMUSG00000065272.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAACCAGACTGCGGAGACC	NA	False	NA	NA	False	NA	NA	NA	130121228	130116342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_130116396_130116552_130116641_130116948_130117064_130117579_130117743_130117893_130118093_130118353_130118543_130118625_130118778_130118950_130119051_130119393_130119542_130119762_130119888_130120072_130120209_130120814
85327	chr7	-	832	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	989	0	-3	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	4552	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
85328	chr17	-	1423	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	12	27	12	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	838	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGGTCTAGTATTG	9701	False	NA	NA	False	NA	NA	NA	29483148	29469803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
85329	chr1	+	4575	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-2	-2026	-2	2022	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	3687	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAATTTTGGTGGGGTTCTT	NA	False	NA	NA	False	NA	NA	NA	4928034	4970154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
85330	chr9	-	1319	6	NNC	ENSMUSG00000074476.7	novel	1366	5	NA	NA	-157	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	894.372495104808	1596	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTTTTTAAAAAAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	21671756	21666745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21666901_21667096_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
85331	chr8	+	1143	8	NNC	ENSMUSG00000002395.15	novel	854	8	NA	NA	5	98225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	368.539145873022	9129	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGCTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	71819865	71920601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820763_71821490_71821522_71821775_71821948_71822170_71822403_71920330
85332	chr15	+	1856	13	NNC	ENSMUSG00000022407.11	novel	466	4	NA	NA	-1040	15	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	294.04501733956	50	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTACATTAAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80831650	80853335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80831819_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
85333	chr8	+	3443	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	-88	-751	-81	5	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	18	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTGAAGTGTTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	75836115	75855072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
85334	chr4	+	2285	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	226	398	84	-398	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTCAAATAAAGTGTCTG	939	False	NA	NA	False	NA	NA	NA	129083778	129113002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
85335	chr9	+	847	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	61	203	31	9	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	34	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGACTTTTTTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	14411973	14421670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
85336	chr11	-	3536	15	NNC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	-1	758	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	147.843477629387	32	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	84020427	83968987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_83970604_83972863_83972938_83975539_83976267_83977860_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
85337	chr19	+	1398	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	154	312	154	-312	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	4064	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAACATTGAACTTTT	997	False	NA	NA	False	NA	NA	NA	8944558	8955531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
85338	chr1	-	2809	7	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.74535599249993	3286	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCGGCAGCCCGCACCC	NA	False	NA	NA	False	NA	NA	NA	87157493	87142027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87142216_87147300_87147416_87148639_87148775_87152072_87152178_87153569_87153723_87153816_87153956_87155519
85339	chrM	+	2915	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	435	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	968	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	105	False	NA	-4	True	NA	NA	NA	12176	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85340	SIRV3	-	3002	8	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-943	intron_retention	FALSE	non_canonical	0	0	junction_1	637.030483363782	5	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAAGCGCACATAAATTC	NA	False	NA	NA	False	NA	NA	NA	9943	1943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2005_4567_4784_6061_6965_7084_7989_8127_8208_8755_8976_9189_9299_9434
85341	chr6	-	3067	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	34	junction_1	2084.23107489398	3	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51439036_51439318_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
85342	chr1	-	1976	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	34	10	34	-10	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	3277	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCACTCAGTTCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	92401548	92366741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
85343	chr17	-	2161	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	44	19	-3	0	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	6814	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	NA	False	NA	NA	NA	26309267	26300203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
85344	chr11	-	3571	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	3	235	junction_13	1064.58200258913	7	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9282	False	NA	NA	False	NA	NA	NA	106679692	106671180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679607
85345	chrM	-	675	1	Antisense	novelGene_ENSMUSG00000064354.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15081	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTAGGCCATATAAGATA	8489	False	NA	NA	False	NA	NA	NA	7699	7024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7000_7700
85346	chr6	+	1120	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-544	-111	544	mono-exon	FALSE	NA	NA	NA	NA	NA	10035	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37782909	37784029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
85347	chr5	-	3608	12	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	1689	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	444.323461954211	2	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTCCTGGGTCTCTGAG	NA	False	NA	NA	False	NA	NA	NA	24780776	24770343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773827_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164
85348	chr4	-	6816	4	Antisense	novelGene_ENSMUSG00000078503.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	657	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACGCGCCCAATACTCAGT	7140	False	NA	NA	False	NA	NA	NA	145269540	145237290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237493_145257378_145257484_145261383_145261512_145263159
85349	chrM	+	2035	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-1088	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	198	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	17	False	NA	-29	True	NA	NA	NA	13056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85350	chr3	+	1006	7	Antisense	novelGene_ENSMUSG00000000563.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGACCCCGACCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	105850101	105866538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_105850382_105851004_105851183_105858906_105859035_105861335_105861497_105863210_105863357_105866176_105866215_105866463
85351	chr15	-	1811	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	3	7	3	-7	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	110	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGGCCCTGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	75952758	75942045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
85352	chr17	+	796	5	NIC	ENSMUSG00000037805.16	novel	830	6	NA	NA	1	0	intron_retention	FALSE	canonical	3	5482	junction_3	1374.50982171827	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	NA	False	NA	NA	NA	28547558	28550006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_28547593_28547784_28548022_28548347_28548497_28549498_28549672_28549803
85353	chr4	-	6767	4	Antisense	novelGene_ENSMUSG00000078503.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	552	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGAACTTCCTGTCACTT	7140	False	NA	NA	False	NA	NA	NA	145269540	145237339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237493_145257378_145257484_145261383_145261512_145263159
85354	chrX	-	554	1	FSM	ENSMUSG00000083596.5	ENSMUST00000121545.2	483	1	-40	-31	-40	31	mono-exon	FALSE	NA	NA	NA	NA	NA	6	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAAAAATCTCCCAGA	NA	False	NA	NA	False	NA	NA	NA	149998685	149998131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_149998100_149998700
85355	chr9	+	1937	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	260	0	-50	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	71	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183587	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
85356	chr6	-	11548	8	NNC	ENSMUSG00000018341.13	novel	2600	10	NA	NA	45420	24275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	93	56	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCGCCTGCTTCAGCTC	-7	True	NA	NA	False	NA	NA	NA	67271258	67244026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_67244391_67248178_67248330_67248867_67249012_67249122_67249213_67249847_67249921_67254742_67254921_67258629_67258804_67260884
85358	chr5	-	959	5	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTCAAGAGACGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	129100224	129097745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129097831_129097927_129098054_129099064_129099253_129099436_129099608_129099835
85359	chr17	+	2337	5	NIC	ENSMUSG00000062691.11	novel	753	5	NA	NA	-11	1389	intron_retention	FALSE	canonical	3	13	junction_1	686.839500902503	3749	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTGGGGTTGGCGTCAG	NA	False	NA	NA	False	NA	NA	NA	79224117	79229124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_79224490_79225785_79225902_79226484_79226530_79227187_79227273_79227405
85360	chr6	+	1847	9	NNC	ENSMUSG00000029993.17	novel	950	8	NA	NA	-431	0	intron_retention	FALSE	canonical	2	3	junction_1	943.044927018326	5474	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	NA	False	NA	NA	NA	86985786	87005441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86985867_86986000_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
85361	chrM	-	2176	2	Genic_Genomic	ENSMUSG00000064368.1_ENSMUSG00000064372.1	novel	519	1	NA	NA	48	550	multi-exon	FALSE	non_canonical	0	0	junction_1	0	161	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGTTATAGAAGTGGCGA	-1	True	NA	-26	True	NA	NA	NA	15374	13001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13950_14146
85362	chr10	-	636	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	91	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCAATAGACT	NA	False	NA	NA	False	NA	NA	NA	29575376	29574740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_29574700_29575400
85363	chr2	-	1941	5	FSM	ENSMUSG00000078923.11	ENSMUST00000130284.2	836	5	-16	-1089	-1	-2	multi-exon	FALSE	canonical	2	2	junction_3	1151.48477519245	3832	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTCGGTGGTTTTATTTT	9430	False	NA	NA	False	NA	NA	NA	167473903	167449765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167470988_167471209_167473859
85364	chr8	+	2134	7	Fusion	ENSMUSG00000054717.8_ENSMUSG00000096917.3	novel	2628	5	NA	NA	-4	1285	multi-exon	FALSE	canonical	0	0	junction_2	3070.70679522194	2033	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGTGTTTGTATTAATTTT	NA	False	NA	NA	False	NA	NA	NA	57958844	57967528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_57958967_57959561_57959836_57964325_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
85365	chrM	+	937	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	100	1	100	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	30159	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	4	True	NA	-57	True	NA	NA	NA	4013	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_4000_5000
85366	chr7	+	1582	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	-107	339	-80	-339	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCAAATGCACACACTAAG	2978	False	NA	NA	False	NA	NA	NA	44711772	44727295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
85367	chr1	+	2689	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-142	0	-142	0	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	52	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	4927894	4968128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
85368	chr7	-	4066	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	11	-4	11	4	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	740	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATTAGTAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	42516647	42466248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
85369	chr11	+	2298	7	NNC	ENSMUSG00000001105.16	novel	1141	6	NA	NA	-4	8968	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	206.219139105305	4805	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTGGTTAGAAGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	78427182	78441531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186_78433622_78434310_78434457_78441353
85370	chrX	-	979	8	NNC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	377.757183645683	61	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATAGTGGGGTATGCT	NA	False	NA	NA	False	NA	NA	NA	72965531	72960484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963589_72964611_72964648_72964877_72964977_72965361
85371	chr7	-	4064	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	13	-4	13	4	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	974	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATTAGTAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	42516645	42466248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
85372	chr14	+	1327	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	47	13	-4	-13	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	52	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGTTTAATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	8348825	8357576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
85373	chr1	-	1049	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	1060.96476850082	12	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCACTGCTCAGGTCTT	1656	False	NA	NA	False	NA	NA	NA	4855926	4846602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4847025_4847747_4847872_4848970_4849022_4852790_4852957_4854173_4854329_4855795
85374	chr1	+	1771	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	38	-2	13	2	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	2413	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGGTTGTCTGAATGGA	NA	False	NA	NA	False	NA	NA	NA	87141673	87156580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
85375	chr7	+	1840	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	60	-4	-4	4	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	40191	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTCTCAGCTGGTTCCT	NA	False	NA	NA	False	NA	NA	NA	120234458	120258751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
85376	chr14	-	2354	15	ISM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	344	-13	344	13	3prime_fragment	FALSE	canonical	3	306	junction_12	81.9057447338596	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959289	55953320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051
85377	chrM	-	3008	1	FSM	ENSMUSG00000064348.1	ENSMUST00000082399.1	71	1	-1784	-1153	-1784	1153	mono-exon	FALSE	NA	NA	NA	NA	NA	1428	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAAGGGTGATAGGATTT	9245	False	NA	NA	False	NA	NA	NA	6943	3935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_3900_6900
85378	chr4	-	1684	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	-61	0	-61	0	multi-exon	FALSE	canonical	3	984	junction_1	0	226	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127223015	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127220565_127222868
85379	chrM	-	3056	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1218	-1319	-1218	1319	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTCTGTTCGTCCGTACCA	900	False	NA	60	True	NA	NA	NA	15288	12232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12200_15300
85380	chr13	+	1673	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	452	0	6	0	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	10910	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	36301846	36721567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
85381	chrX	+	2277	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	12	-324	12	324	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	1346	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACGTAGAATTTAAGCATA	NA	False	NA	NA	False	NA	NA	NA	139357373	139377213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
85382	chr5	+	869	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	25	5	-19	-5	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	585	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACACACACTGTACCGT	4513	False	NA	NA	False	NA	NA	NA	122529965	122544237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
85383	chr3	-	1765	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	14	36	-12	-36	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	3922	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTTTTCTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	157630700	157599920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
85384	chr11	+	4148	11	Antisense	novelGene_ENSMUSG00000025130.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	335	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCAAGGCGACGAGAGCG	5120	False	NA	NA	False	NA	NA	NA	120449437	120463680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120452086_120452985_120453072_120453187_120453372_120453480_120453602_120454030_120454232_120454428_120454557_120454643_120454747_120458743_120458881_120458998_120459134_120462346_120462556_120463484
85385	chr5	-	3605	15	NNC	ENSMUSG00000038803.8	novel	1144	3	NA	NA	17	15167	intron_retention	FALSE	non_canonical	0	0	junction_1	280.202841978916	675	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGCACAAAGGGGGCCATG	NA	False	NA	NA	False	NA	NA	NA	31065052	31048061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31048113_31048215_31048307_31048408_31048566_31049154_31049334_31049780_31049955_31050342_31050804_31051242_31051413_31051716_31051853_31052338_31052544_31053109_31053325_31060392_31060551_31062044_31062157_31062449_31062498_31062972_31064111_31064742
85386	chrM	+	2477	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	-47	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCTTTACCAATTTTT	-3	True	NA	22	True	NA	NA	NA	1093	3660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2599_2688
85387	chr7	+	2835	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	16	-178	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	176.4291642558	1916	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCACTCTTTATA	NA	False	NA	NA	False	NA	NA	NA	42827027	42841355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42839355_42839437
85389	chr4	+	7207	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	11	-4222	-7	4222	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	2184	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATAGTTGGTGGTCATG	905	False	NA	NA	False	NA	NA	NA	145237339	145269980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
85390	chr17	+	334	2	NNC	ENSMUSG00000023939.8	novel	645	3	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	143	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	NA	False	NA	NA	NA	45997275	46009421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45997292_46009103
85391	chrX	-	2361	19	Fusion	ENSMUSG00000031388.15_ENSMUSG00000031387.15	novel	1418	11	NA	NA	-7	5	multi-exon	FALSE	canonical	2	3	junction_8	601.257409286757	8167	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGCATAGTGGGGTAT	NA	False	NA	NA	False	NA	NA	NA	72974369	72960487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361_72965530_72965719_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
85392	chr2	-	2232	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	22	-58	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	40055	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCCCAATGTTGGCTAT	3807	False	NA	NA	False	NA	NA	NA	154734680	154713395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
85393	chr8	+	888	8	NNC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	331.893577730536	12881	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAACCCACATGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	71819660	71822369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820763_71821490_71821522_71821775_71821948_71822170
85394	chr11	+	2116	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	-10	325	-10	-325	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	1564	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAGGATCCCATTACAG	NA	False	NA	NA	False	NA	NA	NA	97206531	97220421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
85395	chr14	+	1914	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	34	6	32	-6	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	3385	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAATACTCTGCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	21881370	21895941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
85396	chr7	+	2592	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-9	2895	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	109.8939830018	104	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATGTAAATAAAGAAAATAC	NA	False	NA	NA	False	NA	NA	NA	42863471	42879161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135_42877110_42878831
85397	chr5	+	4372	15	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	-2	9419	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	870.412440356025	7815	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGACCTCACACCGAGGC	8073	False	NA	NA	False	NA	NA	NA	145051065	145076934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630_145067186_145068174_145068329_145069670_145069791_145071874_145071982_145073710_145073802_145076774
85398	chr11	-	1672	5	NNC	ENSMUSG00000085262.2	novel	946	3	NA	NA	2233	7109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2992	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCGCTGCGCGGAGACGGA	4914	False	NA	NA	False	NA	NA	NA	96940025	96932407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96932478_96935352_96935522_96937853_96938017_96938234_96938383_96938903
85399	chr7	-	3592	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-232	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	786.751364790682	1	94	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAAAAAAGACTTG	NA	False	NA	NA	False	NA	NA	NA	126165815	126145640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156069_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161742_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
85401	chr8	+	616	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	-9	0	-9	0	multi-exon	FALSE	canonical	3	904	junction_1	0	840	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTACGTATGTATTAACT	8911	False	NA	NA	False	NA	NA	NA	71917593	71918391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_71917712_71917893
85402	chr5	+	810	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	-2	1048	-2	-1	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	1148	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGAAGTGTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	146769697	146772794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
85403	chr6	+	1810	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	546	85	8	-85	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGTTTTTCATAAACAT	5156	False	NA	NA	False	NA	NA	NA	85429041	85445372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
85404	chr6	-	2564	13	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2646.72079604597	3	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446825	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438961_51439081_51439318_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
85405	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	46	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
85406	chr10	-	1631	9	NNC	ENSMUSG00000000902.14	novel	1660	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	364.719669746505	61	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	6867	False	NA	NA	False	NA	NA	NA	75757445	75732602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747348_75747491_75750897_75751028_75752633_75752746_75757136
85407	chr7	-	2767	6	Fusion	ENSMUSG00000090744.8_ENSMUSG00000074166.8	novel	1430	4	NA	NA	16	970	multi-exon	TRUE	non_canonical	0	0	junction_1	105.054271688494	500	91	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAGATGTAATCAATGTA	NA	False	NA	NA	False	NA	NA	NA	41210237	41129885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_41130131_41193739_41195109_41195358_41196224_41197139_41197201_41197407_41197535_41210137
85408	chr14	+	1181	9	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	28	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	773.123211396476	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGGTGTGCATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	21881661	21895586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881957_21883865_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
85409	chr7	+	1050	6	Antisense	novelGene_ENSMUSG00000065822.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCGCGGGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	99128091	99132858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99128156_99128474_99128676_99129080_99129270_99130902_99130999_99131467_99131908_99132798
85410	chr8	-	846	1	FSM	ENSMUSG00000110545.2	ENSMUST00000212486.2	454	1	-247	-145	-247	145	mono-exon	FALSE	NA	NA	NA	NA	NA	103	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGGGCATGGTGGCACA	NA	False	NA	NA	False	NA	NA	NA	70463899	70463053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70463100_70463900
85412	chrX	+	1137	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	98	-25	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	164	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCAAATTTGGCCATGGT	NA	False	NA	NA	False	NA	NA	NA	13068784	13069921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069900
85413	chr2	+	1207	2	Genic_Genomic	ENSMUSG00000081434.4	novel	952	1	NA	NA	-82	366	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1779	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152195452	152196852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_152196477_152196669
85414	chr12	-	1577	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	-100	5	-100	-5	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTGAAGTCCTTGTGTA	8364	False	NA	NA	False	NA	NA	NA	85421721	85389566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
85415	chr9	-	4005	11	NNC	ENSMUSG00000032096.17	novel	4072	10	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	320.642495624021	629	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TATTAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	44679142	44652879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966_44678993_44679040
85416	chr15	+	684	5	Antisense	novelGene_ENSMUSG00000022205.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58436	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGAGAGCCGGAAATGAC	NA	False	NA	NA	False	NA	NA	NA	11984058	11996091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_11984382_11986539_11986651_11991044_11991169_11993876_11993948_11996036
85417	chr2	+	1529	15	NNC	ENSMUSG00000076441.10	novel	1696	16	NA	NA	93	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	771.392869544225	4371	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTCTCTGCGTGTGTGC	NA	False	NA	NA	False	NA	NA	NA	31360311	31410683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31388200_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
85418	chrM	+	4888	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064363.1_ENSMUSG00000064370.1_ENSMUSG00000064371.1	novel	1824	1	NA	NA	171	19	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCACCACCAGCACCCAAA	240	False	NA	NA	False	NA	NA	NA	10337	15374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13987_14135
85419	chr19	+	1044	4	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	5	2	intron_retention	FALSE	non_canonical	0	0	junction_1	2935.52527951416	56	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5540548	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5540557_5542524_5542833_5543182_5543260_5543408
85420	chr6	+	1835	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	203	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2174.94797351569	2	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTTAGTGGTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	122684729	122691584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684874_122688496_122688763_122689587_122689675_122690100_122690431_122690576
85421	chr5	-	1236	4	NNC	ENSMUSG00000029580.15	novel	1242	5	NA	NA	-1070	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	1976.76301058068	936	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	4758	False	NA	NA	False	NA	NA	NA	142890479	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890244_142890395
85422	chr18	+	2801	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	-18	22200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	158.489013770111	43542	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCTTTTATCAACAATG	9032	False	NA	NA	False	NA	NA	NA	32970345	33022847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32999045_33022830
85423	chr11	+	1559	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-34	multi-exon	FALSE	canonical	3	1960	junction_1	0	6761	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTGGACAGTCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
85424	chr12	-	2611	1	FSM	ENSMUSG00000060499.8	ENSMUST00000081908.8	1023	1	-5	-1583	-5	1583	mono-exon	FALSE	NA	NA	NA	NA	NA	3403	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATATATACATATAAAAA	NA	False	NA	NA	False	NA	NA	NA	66331180	66328569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_66328600_66331200
85425	chr7	+	3203	5	Intergenic	novelGene_2933	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	127	82	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGAACCAGCAGTATGGTA	NA	False	NA	NA	False	NA	NA	NA	42260400	42388398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42262206_42262538_42263644_42265392_42265453_42265650_42265783_42388297
85426	chr7	-	5719	4	NNC	ENSMUSG00000091594.3	novel	3673	4	NA	NA	-11957	2014	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	2.44948974278318	462	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	42388398	42352878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42358310_42359840_42359902_42360100_42360228_42388298
85427	chr11	+	2333	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	99	-1	-93	1	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	698	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCAGCTTAAAATTACTT	NA	False	NA	NA	False	NA	NA	NA	97206640	97220747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
85428	chr6	-	3548	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	-85	-1825	-10	-3	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	531	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTGTGCACTGCTACA	NA	False	NA	NA	False	NA	NA	NA	51446837	51437914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
85429	chr11	+	4659	12	FSM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	202	0	-37	0	multi-exon	FALSE	canonical	3	928	junction_6	43.300411312535	9560	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCCTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	102919373	102959738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
85430	chr7	-	3226	5	NNC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	-2427	-1024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	80.2725824924052	215	115	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTTTAAATCGTAAAGCC	NA	False	NA	NA	False	NA	NA	NA	42519085	42467276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547_42516641_42518890
85431	chr7	-	2770	5	NNC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-11	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	142.078103520564	4	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTGGCGTGTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	42342177	42309531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42310209_42310618_42312421_42314181_42314243_42314441_42314569_42342074
85432	chrX	+	2848	16	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	38	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	815.250756243474	299	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74139497	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74139734_74140238_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
85433	chr7	-	4167	6	NNC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	-2427	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88.3583612342375	234468	173	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAATTTTCATTAGTAAT	NA	False	NA	NA	False	NA	NA	NA	42519085	42466254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42468305_42468385_42470028_42471782_42471844_42472041_42472168_42516547_42516641_42518890
85434	chr13	-	2284	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	108	97	13	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	12	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTTTCACAATTCTCAT	NA	False	NA	NA	False	NA	NA	NA	100922970	100915254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
85435	chr10	+	1774	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	106	-497	20	497	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	152	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGAATTATTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	128158433	128163919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
85436	chr9	+	2252	4	Genic_Genomic	ENSMUSG00000118728.1	novel	72	1	NA	NA	-8604	1462	multi-exon	FALSE	non_canonical	0	0	junction_2	18.3847763108502	17	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCGTCAGTTTGTTAC	NA	False	NA	NA	False	NA	NA	NA	88948784	88958922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_88949440_88949528_88949604_88957281_88957890_88958008
85437	chr13	+	4544	10	Genic_Genomic	ENSMUSG00000113626.2_ENSMUSG00000074867.5_ENSMUSG00000113836.2	novel	2707	4	NA	NA	-23653	2414	multi-exon	TRUE	non_canonical	0	0	junction_3	54.8920376964559	46443	116	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	61928417	62323647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_61928544_61928736_61928798_61933782_61933926_61997887_61997915_62008201_62008346_62140835_62140927_62198247_62198631_62319436_62320940_62321023_62321979_62322536
85438	chr17	-	570	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2408.53180174147	8525	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTCCACTTGTGTATGTTC	NA	False	NA	NA	False	NA	NA	NA	27854214	27849396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849481_27850173_27850230_27851259_27851331_27853045_27853218_27853299_27853450_27854177
85439	chr7	-	1896	14	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	835.627404866136	67	83	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCATGGGGGCTCAGCC	NA	False	NA	NA	False	NA	NA	NA	33929712	33901588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903587_33905190_33905361_33907030_33907178_33907643_33907736_33915380_33915450_33919989_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
85440	chr6	+	1478	8	Antisense	novelGene_ENSMUSG00000106676.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	156	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGCCACGACCCCAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	32769157	33037128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_32769862_32780824_32780960_32829078_32829153_32869227_32869310_32945134_32945254_32985417_32985500_33026271_33026360_33036934
85441	chr1	-	1474	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	26	2994	26	-2994	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGAGGAGGCTCTCCC	NA	False	NA	NA	False	NA	NA	NA	13730744	13696547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
85442	chr3	+	950	6	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-1983	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5855.04061130237	196	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGCATCTGTAGTCATA	NA	False	NA	NA	False	NA	NA	NA	137568264	137572662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137568273_137570353_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
85443	chr10	+	997	4	Antisense	novelGene_ENSMUSG00000118400.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCGAAAAGCCCCAGTT	6862	False	NA	NA	False	NA	NA	NA	128383982	128512595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128384301_128384786_128384843_128384956_128384967_128511982
85444	chr18	-	2564	15	ISM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	1874	238	-910	-238	3prime_fragment	FALSE	canonical	3	5978	junction_5	253.108440501421	9	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTGAAAGCCTCTTGAT	2073	False	NA	NA	False	NA	NA	NA	35085536	35070704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448
85445	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	3	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
85446	chr13	+	1673	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	452	0	6	0	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	36301846	36721567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
85447	chr8	-	431	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-6	24	-6	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	61	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108166217	108165786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
85448	chr12	-	1884	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	-17	4	-17	-4	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	3503	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTATATGGTCAGAGC	NA	False	NA	NA	False	NA	NA	NA	36206841	36141837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
85449	chr3	+	2765	16	FSM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	102	6268	-3	1063	multi-exon	FALSE	canonical	3	839	junction_3	66.7311687960648	2944	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGTCCTTCATTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	69629419	69657438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
85450	chr7	+	3937	11	Fusion	ENSMUSG00000045752.14_ENSMUSG00000037706.18	novel	1533	8	NA	NA	-2	0	multi-exon	FALSE	canonical	2	6	junction_8	2862.25593544672	41	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	142606473	142624824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048_142621745_142621911_142623588_142623672_142624030_142624528
85451	chr17	+	2509	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	165	3187	-14	1331	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	4136	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAAGGCATTGGATCC	NA	False	NA	NA	False	NA	NA	NA	13226868	13235834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
85452	chr3	+	2146	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	-19	-1389	-19	0	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	2327	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATTGTTTGACAAGTGC	NA	False	NA	NA	False	NA	NA	NA	135144057	135172436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
85453	chr9	+	2879	15	NNC	ENSMUSG00000035048.14	novel	411	4	NA	NA	-39714	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	391.333591187668	7265	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGCTTCTGTCAAAGTT	NA	False	NA	NA	False	NA	NA	NA	102463780	102511625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_102464211_102471705_102471793_102473319_102473519_102475367_102475485_102478517_102478652_102479614_102479747_102480039_102480274_102484523_102484638_102490492_102490619_102492474_102492568_102496007_102496187_102496889_102496960_102503461_102503887_102506961_102507088_102511212
85454	chrM	+	3913	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-56	-2275	-56	2275	mono-exon	FALSE	NA	NA	NA	NA	NA	4	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	344	False	NA	-34	True	NA	NA	NA	1037	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_5000
85455	chr16	+	2929	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	32	0	-20	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	3407	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470433	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
85456	chr5	-	4017	10	NNC	ENSMUSG00000009013.6	novel	2030	3	NA	NA	9	17411	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1663.63430810714	1059	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGCGGGGCGGGGAGAAC	NA	False	NA	NA	False	NA	NA	NA	115438962	115417757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_115417972_115421622_115421772_115422446_115422669_115428989_115429096_115432881_115432973_115433722_115433833_115433919_115434122_115434179_115436893_115438571_115438710_115438890
85457	chr13	-	4139	8	Fusion	ENSMUSG00000060147.16_ENSMUSG00000052180.16	novel	833	6	NA	NA	13	2583	multi-exon	TRUE	canonical	3	31	junction_7	304.648609893766	7	156	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTGAACGCTGT	8593	False	NA	NA	False	NA	NA	NA	34119845	34061215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_34064316_34064604_34064761_34077786_34077903_34107024_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551
85458	chr14	+	1921	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	-3	4	-3	-4	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	25	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACCTATGTTATCTTTTA	NA	False	NA	NA	False	NA	NA	NA	4198625	4201869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
85459	chr5	-	867	6	Antisense	novelGene_ENSMUSG00000029614.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	220	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCCTTCTTGGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	121347030	121343528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121343725_121343814_121343918_121344728_121344872_121345207_121345256_121346447_121346637_121346842
85460	chr11	+	1210	11	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	10	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGAAGCCGGACGGAAAAC	NA	False	NA	NA	False	NA	NA	NA	33102509	33113005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33104061_33106003_33106104_33106662_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
85461	chr7	+	2699	8	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-9	14144	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	119.588239132347	19787	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACGCCTGTGTGCATTT	NA	False	NA	NA	False	NA	NA	NA	42863471	42890410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135_42876337_42882321_42882483_42882879_42883032_42884606_42885020_42889926
85462	chr19	+	1510	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	-27	381	-27	-381	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	643	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAACAAGTCTTGCCAGTC	816	False	NA	NA	False	NA	NA	NA	8944377	8955462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
85463	chr4	+	5125	3	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-51	4069	multi-exon	FALSE	non_canonical	0	0	junction_2	2134.5	572	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	-3	True	NA	NA	False	NA	NA	NA	12232781	12238020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12232839_12232904_12235271_12235318
85464	chr6	-	3639	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	304	16	-51	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	16	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8994	False	NA	NA	False	NA	NA	NA	122719400	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85465	chr6	+	1379	3	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-5517	62975	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3635	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAGTTTTTGCATCA	7743	False	NA	NA	False	NA	NA	NA	116145180	116214059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_116145540_116150589_116151419_116213868
85466	chr7	+	2699	8	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-9	14144	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	119.588239132347	5852	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACGCCTGTGTGCATTT	NA	False	NA	NA	False	NA	NA	NA	42863471	42890410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135_42876337_42882321_42882483_42882879_42883032_42884606_42885020_42889926
85467	chr17	+	1776	6	Antisense	novelGene_ENSMUSG00000019579.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35445	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGATTTGGCTGCCATGG	NA	False	NA	NA	False	NA	NA	NA	56482737	56490979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_56484004_56484698_56484772_56485263_56485348_56486365_56486426_56489664_56489718_56490739
85468	chr7	-	2499	5	NNC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-46232	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	174.005747031528	3513	87	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAACCTGGCGTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	42388398	42309534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42311054_42311728_42312421_42314181_42314243_42314441_42314569_42388298
85469	chr10	-	2369	13	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-24	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	574.805619318392	7968	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	8668	False	NA	NA	False	NA	NA	NA	128401880	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128393944_128394084_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
85470	chr12	+	3348	8	FSM	ENSMUSG00000037466.14	ENSMUST00000049271.13	2441	8	-11	-896	-11	-608	multi-exon	FALSE	canonical	3	152	junction_3	28.4088230043027	750	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCTCAATGGCGGAACG	NA	False	NA	NA	False	NA	NA	NA	113120029	113129060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
85471	chr4	-	503	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	63	3140	63	-1	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTTGCTGGCTTTTGT	-4	False	NA	NA	False	NA	NA	NA	3835602	3834473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
85472	chr5	+	2048	4	ISM	ENSMUSG00000029205.13	ENSMUST00000031108.9	1843	5	132	5020	132	1068	5prime_fragment	FALSE	canonical	1	1	junction_1	0.942809041582063	3	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGTTTCTATGCCCAAA	NA	False	NA	NA	False	NA	NA	NA	66124598	66129649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_66124855_66125124_66125271_66126457_66126613_66128158
85473	chr10	-	1764	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-25	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	610.171851930986	3272	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899693	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887094_116888997_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
85474	chrM	+	955	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	2	0	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	4074	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATATGTCTGATAAAAG	-2	True	NA	109	True	NA	NA	NA	2750	3705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
85475	chr4	-	2643	16	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	420.417675915538	1373	11	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484698	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116478985_116479089_116479963_116480012_116484528
85476	chr5	-	2705	23	NNC	ENSMUSG00000029086.16	novel	1518	7	NA	NA	-5	-3007	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.59126983369583	28	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTTTTCTTAACCT	NA	False	NA	NA	False	NA	NA	NA	44259028	44161791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_44161991_44162266_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
85477	chr7	-	1062	2	Genic_Genomic	ENSMUSG00000108366.2	novel	795	1	NA	NA	-428	56	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18111	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCTACCTTAGAAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	16454263	16452984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_16453848_16454064
85478	chr4	-	2007	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	29	2	7	-2	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	4122	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCCTGGTTGGTTTAAG	8837	False	NA	NA	False	NA	NA	NA	129436477	129409898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
85479	chr5	+	3462	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	-24	-1171	-24	1171	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	221	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTACTCTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	45650691	45671204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
85480	chr19	+	3535	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	-22	1953	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	4311	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACAAGCGACACTTTATG	NA	False	NA	NA	False	NA	NA	NA	47720098	47725980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47723262
85481	chr9	+	668	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6544.36268554853	26	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	NA	False	NA	NA	NA	120400578	120403501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_120400587_120401193_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
85482	chrM	+	1771	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-824	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	-30	True	NA	NA	NA	13320	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13943_14139
85483	chr4	-	1507	1	ISM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	2420	0	2420	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127220534	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_127219000_127220500
85484	chr11	+	2511	5	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53090	1623	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	134.075305332488	70	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGAGAATTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	62402523	62406866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62402827_62402963_62403098_62403729_62404301_62404752_62405746_62406356
85485	chr8	+	926	4	NNC	ENSMUSG00000031490.7	novel	1997	3	NA	NA	42	15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7077.43206725905	13	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCCCGCCCACAGCTGGG	NA	False	NA	NA	False	NA	NA	NA	27750398	27765541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_27750595_27757001_27757118_27763350_27763531_27765107
85486	chr14	+	814	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	238	117	0	1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAGAACTCTTTGCTGTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
85487	chr5	+	704	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	719	-12	-33	5prime_fragment	FALSE	canonical	3	7748	junction_1	3498.23972877789	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGCGCAAGCCCAGGCAT	NA	False	NA	NA	False	NA	NA	NA	121342596	121346585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453
85488	chr2	+	1629	13	NNC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	-1053	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	560.650137241479	25381	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	7494	False	NA	NA	False	NA	NA	NA	61540984	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_61541159_61542123_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
85489	chr15	-	2731	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	28	-95	-10	95	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	4149	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGAGGGGAGATTAGGA	NA	False	NA	NA	False	NA	NA	NA	10486005	10474769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
85490	chr6	+	2236	17	NNC	ENSMUSG00000025609.16	novel	11395	18	NA	NA	3	4550	at_least_one_novel_splicesite	FALSE	canonical	1	15	junction_16	168.346728788385	10	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAATTAAAATTACG	NA	False	NA	NA	False	NA	NA	NA	31375782	31474178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31473982
85491	chr8	+	1236	4	NNC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	7	3	intron_retention	FALSE	non_canonical	0	0	junction_3	279.964680312039	4967	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCATTTGTGGTACTCT	468	False	NA	NA	False	NA	NA	NA	70584003	70586402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70584250_70584567_70584659_70585061_70585301_70585742
85492	chrM	-	3056	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1218	-1319	-1218	1319	mono-exon	FALSE	NA	NA	NA	NA	NA	6255	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTCTGTTCGTCCGTACCA	900	False	NA	60	True	NA	NA	NA	15288	12232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12200_15300
85493	chr6	-	3642	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	301	16	-54	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	9110	120	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8991	False	NA	NA	False	NA	NA	NA	122719403	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85494	chrX	-	718	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	-37	-30	-37	30	mono-exon	FALSE	NA	NA	NA	NA	NA	701	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGCCCAAGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	151693188	151692470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693200
85495	chr14	+	975	8	NIC	ENSMUSG00000053453.10	novel	707	6	NA	NA	160	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	230.414976128918	2902	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	NA	False	NA	NA	NA	8508762	8520749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
85496	chr11	+	754	3	Antisense	novelGene_ENSMUSG00000018293.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGGCTCGGGCTGGCGGGC	1755	False	NA	NA	False	NA	NA	NA	70542669	70545354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_70543048_70543612_70543806_70545171
85497	chr11	-	1158	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	0	-1	0	1	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	990	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGGATGTATGTGACAAT	NA	False	NA	NA	False	NA	NA	NA	33113077	33104925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
85498	chr1	+	1309	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	39	19	8	-19	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	8015	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTGAAGTTTTGGAT	NA	False	NA	NA	False	NA	NA	NA	181952353	181959953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_181952541_181956248_181956318_181958900
85499	chrX	+	4041	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	5	-2	5	2	multi-exon	FALSE	canonical	3	1167	junction_1	494.469940036804	4	83	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTAAGTTCGCATGTTTT	NA	False	NA	NA	False	NA	NA	NA	20524569	20549420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
85501	chr1	-	608	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	74	415	74	-415	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	303	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGCCTGCATCTCTTT	5030	False	NA	NA	False	NA	NA	NA	167221336	167199949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
85502	chrM	+	2268	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	1082	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	128	False	NA	31	True	NA	NA	NA	12823	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85503	chr5	-	1826	8	NNC	ENSMUSG00000107283.4	novel	1724	8	NA	NA	11	-15	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	135.420735156046	26	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTTTTTAAAATCAAACA	NA	False	NA	NA	False	NA	NA	NA	31311525	31298021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311338
85504	chr11	-	1180	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	230	223	96	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	21	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33112976	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
85505	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	98	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
85506	chr7	-	1299	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	211	-2	-1	2	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	264	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTCGCCCTGGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	44635781	44626179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
85507	chr6	-	2101	11	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	57	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1682.35336359518	432	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9326	False	NA	NA	False	NA	NA	NA	128415583	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407143_128407201_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
85508	chr7	+	1586	9	FSM	ENSMUSG00000003421.14	ENSMUST00000107829.9	972	9	38	-652	-6	-142	multi-exon	FALSE	canonical	3	37	junction_6	164.802912595621	530	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACCACTGAGCCATCTTC	3096	False	NA	NA	False	NA	NA	NA	44711890	44727492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44726050_44726164_44726244_44726354_44726735
85509	chr14	+	984	9	NNC	ENSMUSG00000053453.10	novel	951	9	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	300.85710894044	1	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGATCTTTGTGCTCATT	NA	False	NA	NA	False	NA	NA	NA	8508558	8520745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_8508579_8509121_8509248_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
85510	chr9	+	923	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	-11	6	1	-2	multi-exon	FALSE	canonical	3	218	junction_7	172.705955134082	4166	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAGGTTGGAAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	26911006	26918624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
85511	chr11	-	1798	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	12	3	-3	-3	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	1146	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATCTTTGGTCTAAGCA	NA	False	NA	NA	False	NA	NA	NA	60307865	60291454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
85512	chr2	+	8458	10	Fusion	ENSMUSG00000078906.10_ENSMUSG00000080888.4	novel	919	4	NA	NA	-8	52124	intron_retention	FALSE	non_canonical	0	0	junction_5	232.717335032634	286	59	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTTGACCTGGAAGAGC	NA	False	NA	NA	False	NA	NA	NA	174852025	174983835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174852115_174854703_174854899_174855220_174855276_174858430_174858558_174928631_174930910_174939238_174939479_174968262_174968726_174968789_174973562_174974987_174975115_174983723
85513	chr7	-	1477	10	FSM	ENSMUSG00000109324.3	ENSMUST00000207370.2	2147	10	-97	767	-21	2	multi-exon	FALSE	canonical	3	3261	junction_9	152.269092540837	3239	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTCGCCCTGGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	44636013	44626179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
85514	SIRV6	-	1412	9	Genic_Genomic	SIRV6C_SIRV6B	novel	276	1	NA	NA	-9275	75	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	27	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTATTTACAACTCCAAA	NA	False	NA	NA	False	NA	NA	NA	11822	1469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV6_-_1535_1640_1721_1848_2030_2470_2619_2738_2828_3105_3164_10723_10825_11035_11109_11205
85515	chr11	-	1140	10	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	6482.55071159455	298	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113072	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111563_33111628_33112921
85516	chr1	-	1626	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-841	-2	-841	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
85517	chr14	-	5141	10	NNC	ENSMUSG00000021905.15	novel	2953	3	NA	NA	-17474	2	intron_retention	FALSE	non_canonical	0	0	junction_3	239.482775998609	4156	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTTTCTTGAAGCTTTT	5533	False	NA	NA	False	NA	NA	NA	31825160	31802520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31805204_31806863_31806939_31807366_31808008_31813589_31813715_31814022_31814087_31817319_31817428_31818442_31818584_31821340_31821587_31822940_31823050_31824211
85518	chr17	+	5800	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3323	-628	-3323	628	mono-exon	FALSE	NA	NA	NA	NA	NA	2	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153920	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
85519	chr6	-	563	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	33	2527	33	147	multi-exon	FALSE	canonical	3	4909	junction_2	335	48	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGTACGGTCTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	50543485	50542069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_50542366_50542471_50542649_50543395
85520	chr8	-	2618	11	FSM	ENSMUSG00000035439.14	ENSMUST00000035960.13	2013	11	428	-1033	-28	1033	multi-exon	FALSE	canonical	3	458	junction_6	24.6578587878185	1716	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	566	False	NA	NA	False	NA	NA	NA	71725150	71702735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
85521	chrM	-	6035	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	4495	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATGATGAGCTCATGTAA	900	False	NA	60	True	NA	NA	NA	15288	9056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
85522	chr10	+	2057	14	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	7	0	intron_retention	FALSE	non_canonical	0	0	junction_10	763.336967167048	51	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	NA	False	NA	NA	NA	111309148	111332745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329318_111330031_111330155_111330655_111330686_111331191_111331237_111331900
85523	chrM	+	1124	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	20	0	20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	18	False	NA	107	True	NA	NA	NA	14164	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
85524	chr1	+	5497	8	NNC	ENSMUSG00000037216.6	novel	812	2	NA	NA	-53	14154	intron_retention	TRUE	non_canonical	0	0	junction_2	0.699854212223765	1089	94	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACGCCGCTGCGCCTGCG	NA	False	NA	NA	False	NA	NA	NA	37911401	37929463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37911670_37913944_37918443_37918635_37918704_37920015_37920129_37920778_37920867_37921642_37921780_37924295_37924397_37929239
85525	chrX	+	5834	22	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	7	50310	intron_retention	FALSE	non_canonical	0	0	junction_1	1512.23494557302	448	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCGCCCCCTTTACACC	NA	False	NA	NA	False	NA	NA	NA	161543404	161612398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543506_161543546_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343_161564417_161565226_161565323_161567319_161567411_161569612_161569688_161570554_161570675_161573607_161573807_161580637_161580807_161590480_161590572_161594286_161594592_161612234
85526	chrM	-	665	1	Antisense	novelGene_ENSMUSG00000064354.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGGAATGGGTAGGCC	8489	False	NA	NA	False	NA	NA	NA	7699	7034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7000_7700
85527	chrM	+	2556	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	794	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21980	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	76	False	NA	-6	True	NA	NA	NA	12535	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85528	chr14	+	1208	5	FSM	ENSMUSG00000035960.15	ENSMUST00000049411.12	1239	5	31	0	21	0	multi-exon	FALSE	canonical	3	716	junction_1	194.901898400195	3968	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCTTTCTTTGTCCCT	210	False	NA	NA	False	NA	NA	NA	51162455	51164596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_51162487_51162669_51162782_51162973_51163162_51163617_51163811_51163912
85529	chr6	-	3587	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2991.63845854854	2558	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713690_122714135_122714258_122716791_122716953_122717346_122717440_122719334
85530	chr19	+	1819	9	NNC	ENSMUSG00000038812.17	novel	985	4	NA	NA	-3000	0	intron_retention	TRUE	non_canonical	0	0	junction_1	401.277627553543	431	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	6265	False	NA	NA	False	NA	NA	NA	6884065	6888396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6884318_6884431_6884495_6884608_6884647_6884907_6885047_6885354_6885487_6886904_6887631_6887730_6887833_6887951_6888042_6888119
85531	chr4	-	2641	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	-131	-630	-131	630	multi-exon	FALSE	canonical	3	980	junction_1	0	448	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAAACTGAGCCCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	127224768	127218397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127220565_127224294
85532	chr6	+	5105	14	NNC	ENSMUSG00000079426.14	novel	2270	6	NA	NA	-11458	-36	intron_retention	FALSE	non_canonical	0	0	junction_1	577.470079144965	5138	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTACACTGTCTCAAAATA	NA	False	NA	NA	False	NA	NA	NA	113343617	113367373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113344141_113347181_113347371_113347901_113348009_113349237_113349343_113349425_113349568_113351739_113351837_113351960_113352221_113352800_113353028_113353854_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
85533	chr11	+	4648	12	FSM	ENSMUSG00000020936.9	ENSMUST00000021314.8	4861	12	212	1	-27	-1	multi-exon	FALSE	canonical	3	928	junction_6	43.300411312535	143	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTCTCTCCTGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	102919383	102959737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
85534	chr3	+	909	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	156	4	30	-4	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCCCGTGGTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	137570403	137572679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
85535	chr17	+	1965	2	FSM	ENSMUSG00000035842.11	ENSMUST00000223600.2	576	2	15	-1404	0	1404	multi-exon	FALSE	canonical	3	158	junction_1	0	569	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTTTTCAGAAGGGT	NA	False	NA	NA	False	NA	NA	NA	66430565	66435010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_66430688_66433167
85536	chr6	-	3609	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3762	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3640.94175317321	798	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	5131	False	NA	NA	False	NA	NA	NA	122774837	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706570_122706610_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122774760
85537	chrX	-	4552	9	FSM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	25	-431	25	431	multi-exon	FALSE	canonical	3	41	junction_4	6.21992765231236	139	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAAATCTGTTTCAGGT	NA	False	NA	NA	False	NA	NA	NA	76839859	76804585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76814852_76814949_76816721_76816842_76825643_76825908_76829733_76829903_76839153
85538	chr11	-	1279	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	131	223	1	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	215378	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113075	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
85539	chrM	-	5441	3	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	4495	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATGATGAGCTCATGTAA	900	False	NA	60	True	NA	NA	NA	15288	9056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_12350_12943_13953_14149
85540	chr4	+	1295	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	49	15	15	-15	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	2	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGAAAGATGCTATGGTG	NA	False	NA	NA	False	NA	NA	NA	108691846	108719309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
85541	chr2	-	3461	11	NNC	ENSMUSG00000027108.16	novel	2175	11	NA	NA	-38	1359	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	128.925133313873	3084	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACCTGCCAGCATCATGC	NA	False	NA	NA	False	NA	NA	NA	73044715	72921785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_72924069_72927488_72927612_72929635_72929733_72930414_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
85542	chr14	+	1863	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	54	5	16	-5	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	5655	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGACCTATGTTATCTTTT	NA	False	NA	NA	False	NA	NA	NA	4198682	4201868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
85543	chr1	+	3684	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	193	-1	-33	1	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	2861	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTACTGTGTCTGTGCTTTA	850	False	NA	NA	False	NA	NA	NA	58432249	58446513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
85544	chr6	-	3439	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	42	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706447_122706724_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85545	chr5	+	6032	4	FSM	ENSMUSG00000029198.4	ENSMUST00000031099.4	3528	4	186	-2690	186	2690	multi-exon	FALSE	canonical	3	2567	junction_1	75.3126815350509	67	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGGGTAAAGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	36622527	36634114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_36622600_36626781_36626945_36627945_36628028_36628399
85546	chr18	+	1755	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	-7	-1	7	mono-exon	FALSE	NA	NA	NA	NA	NA	286966	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
85547	chr9	-	1118	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	93	21	6	-21	multi-exon	FALSE	canonical	3	1085	junction_1	10	7054	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAATTTGAAAAAATTA	3806	False	NA	NA	False	NA	NA	NA	96360635	96353010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_96353906_96356010_96356059_96360460
85548	chr16	+	2089	1	Antisense	novelGene_ENSMUSG00000048087.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	78	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGTTTTTTTTAAATA	NA	False	NA	NA	False	NA	NA	NA	45973351	45975440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45973400_45975400
85549	chr11	+	1165	11	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14028	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCATCGAGTCTTCCATG	NA	False	NA	NA	False	NA	NA	NA	33102509	33112960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33104060_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33109995_33110333_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
85550	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4487	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
85551	chr2	+	1220	2	Genic_Genomic	ENSMUSG00000081434.4	novel	952	1	NA	NA	-76	385	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATCGGT	NA	False	NA	NA	False	NA	NA	NA	152195458	152196871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_152196477_152196669
85552	chrM	-	3817	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	49	-3347	49	3347	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGTAGCATTAGTGAGGG	2167	False	NA	NA	False	NA	NA	NA	14021	10204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_10200_14000
85553	chr8	+	3292	20	ISM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	3005	2098	2991	-2098	3prime_fragment	FALSE	canonical	2	2613	junction_18	264.272838112412	550	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111763538	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
85554	chr9	-	4054	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	18	0	18	0	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	896	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTATCCCTCAAACGG	NA	False	NA	NA	False	NA	NA	NA	44679124	44652860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
85555	chr17	-	1074	6	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	33	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2027.92287821801	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	NA	False	NA	NA	NA	15718527	15696220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713480_15714428_15714786_15718414
85556	chrM	-	674	1	Antisense	novelGene_ENSMUSG00000064346.1_AS_novelGene_ENSMUSG00000064345.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGAGTTACTTCTGGTA	9980	False	NA	67	True	NA	NA	NA	4950	4276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_4300_5000
85557	chrM	+	790	1	FSM	ENSMUSG00000064353.1	ENSMUST00000082404.1	70	1	-788	68	-788	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-3	True	NA	15	True	NA	NA	NA	6153	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6200_6900
85558	chr4	-	861	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	20	-48	20	48	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	275	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCAGGTGTCCCTTGTT	NA	False	NA	NA	False	NA	NA	NA	135780684	135776993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
85559	chr8	+	1298	10	ISM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	104	344	9	-270	5prime_fragment	FALSE	canonical	3	2216	junction_5	92.9258299750032	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCCAGAGGAAATAGATATC	NA	False	NA	NA	False	NA	NA	NA	84441909	84449633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515
85560	chr7	+	704	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	47	0	-1	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1311	False	NA	NA	False	NA	NA	NA	3707038	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
85561	chrX	+	3070	16	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	830.136149475896	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	-57	True	NA	NA	NA	74139667	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74139846_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
85562	chr15	+	2050	5	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	1118	intron_retention	FALSE	canonical	3	5295	junction_1	2521.41096412306	16	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCTCTGGTGTAATAGC	NA	False	NA	NA	False	NA	NA	NA	76788284	76791632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788310_76788502_76788881_76789017_76789237_76790055_76790172_76790320
85563	chr17	+	1562	11	NIC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	9	-3	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	699.847383362973	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATGAAACAACCGTGTC	NA	False	NA	NA	False	NA	NA	NA	35460730	35472649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
85564	chr14	+	3371	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	63	-1269	63	1269	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	1398	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAAGTTAAGCAGTTT	1749	False	NA	NA	False	NA	NA	NA	26359291	26379682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
85565	chr18	+	2837	2	FSM	ENSMUSG00000057561.11	ENSMUST00000235973.2	2651	2	841	-1027	552	-6	multi-exon	FALSE	canonical	3	1710	junction_1	0	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATATCTAAATGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46731632	46743272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46731768_46740570
85566	chr1	-	1489	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	55	554	-15	-554	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	22854	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGTTCTGCAATCTGTT	7351	False	NA	NA	False	NA	NA	NA	160040390	160030490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
85567	chr3	+	1250	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	-29	5	-29	5	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	339	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAAGTCTTAAAAGCTTTA	NA	False	NA	NA	False	NA	NA	NA	87826783	87830974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
85568	chr13	+	1721	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	-1	2	-1	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	2454	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAGCTTAATTACATTT	NA	False	NA	NA	False	NA	NA	NA	41154497	41166489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
85569	chrM	+	3350	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	987	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85570	chr7	-	3942	18	NNC	ENSMUSG00000045948.9	novel	722	3	NA	NA	-13255	0	intron_retention	FALSE	non_canonical	0	0	junction_3	220.716950681952	4417	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	28454500	28439065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28439665_28440911_28440980_28441229_28441708_28443664_28443760_28445873_28445905_28446163_28446305_28446381_28446436_28446908_28446976_28447256_28447361_28448377_28448428_28449001_28449108_28449302_28449349_28449432_28449522_28449604_28449716_28451665_28451770_28451855_28451943_28452026_28452092_28452853
85571	chr17	+	3406	17	NNC	ENSMUSG00000002768.9	novel	945	4	NA	NA	-15	16972	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	322.870275565513	3106	4	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCCACCATCCTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	46992034	47011009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644_46995053_46995186_46995304_46995431_46995504_46995589_46995692_46996226_46996354_46996442_46996618_46996980_46997034_46997188_46997356_46997482_46997620_46997961_46998055_46998177_46998287_46998371_46998574_46998764_46998955_47010993
85572	chr14	+	994	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	-63	6	-63	-4	multi-exon	TRUE	canonical	3	370	junction_1	118.776758531907	1999	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGATCTTTGTGCTCATT	NA	False	NA	NA	False	NA	NA	NA	8508422	8520745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
85573	chrX	+	4023	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	33	15	33	-15	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	4461	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGATCAGGCTGCAAGTG	NA	False	NA	NA	False	NA	NA	NA	20529169	20549403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
85574	chr12	+	2158	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	42	-7	42	7	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	110	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTAAAATGTACATCTCTT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
85575	chrM	+	1600	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	13	-68	13	68	mono-exon	FALSE	NA	NA	NA	NA	NA	53	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	14	False	NA	NA	False	NA	NA	NA	5340	6940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
85576	chr5	+	2168	10	NIC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	2	17	junction_1	1059.49673587668	25599	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	334	False	NA	NA	False	NA	NA	NA	77099201	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77099350_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
85577	chr5	+	6332	19	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-38164	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1658.90859555162	14204	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	77060989	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77063252_77063790_77063911_77065878_77066105_77067218_77067346_77067602_77067755_77069316_77069392_77070059_77070206_77070297_77070415_77073520_77073727_77074636_77074707_77098804_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
85578	chr6	+	4054	15	Antisense	novelGene_ENSMUSG00000029782.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3473	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCGGCGGCGGCGGGCAA	NA	False	NA	NA	False	NA	NA	NA	30480786	30509749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_30482984_30487372_30487447_30489290_30489392_30489476_30489590_30491085_30491186_30492597_30492724_30494738_30494834_30497165_30497240_30497818_30497992_30501898_30502102_30505731_30505978_30506787_30506917_30508452_30508511_30508663_30508814_30509534
85579	chr8	+	2010	6	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	-66	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	320.893377931051	3086	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	NA	False	NA	NA	NA	107783442	107787563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008_107785997_107787088
85580	chr19	+	2151	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	9	-220	0	220	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	1074	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTGCCCTGTGGCCTT	NA	False	NA	NA	False	NA	NA	NA	18609322	18630012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
85581	chr8	+	1535	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	-66	1567	-66	698	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	661	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCTTCCTTTGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	107783442	107785996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
85582	chr15	-	898	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	2	302	2	-2	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	2413	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGTTGTAGATGCA	NA	False	NA	NA	False	NA	NA	NA	82128947	82118281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
85583	chr4	+	2930	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	28	2	-21	-2	multi-exon	FALSE	canonical	3	2261	junction_5	110.190105612981	509	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTGGTCATGATGTCTG	NA	False	NA	NA	False	NA	NA	NA	118478023	118484971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
85584	chr1	+	1970	10	Antisense	novelGene_ENSMUSG00000098288.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3245	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTGTTCGCGGCGCC	NA	False	NA	NA	False	NA	NA	NA	92366747	92401548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_92367632_92379734_92379841_92388100_92388184_92390008_92390070_92390801_92390880_92392082_92392203_92395100_92395192_92397586_92397805_92398542_92398707_92401383
85585	chr7	+	1902	11	NNC	ENSMUSG00000019738.16	novel	819	6	NA	NA	-7811	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	601.739054740508	3268	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	29923561	29932812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29923775_29923899_29923973_29926270_29926463_29927029_29927128_29930552_29930695_29931004_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
85586	chrM	+	2824	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	526	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	196	False	NA	-41	True	NA	NA	NA	12267	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85587	chr16	-	1238	1	NIC	ENSMUSG00000022706.17	novel	1280	4	NA	NA	3283	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTCGTTTATTTTAAT	NA	False	NA	NA	False	NA	NA	NA	18692006	18690768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_18690800_18692000
85588	chrM	+	2867	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	483	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	153	False	NA	44	True	NA	NA	NA	12224	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85589	chr1	-	2232	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	24981	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4436	False	NA	NA	False	NA	NA	NA	55127202	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
85590	chr4	-	1842	2	NNC	ENSMUSG00000042367.13	novel	1623	2	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	0	30	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127222932	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220806_127222868
85591	chr10	+	2536	13	FSM	ENSMUSG00000025395.15	ENSMUST00000026461.8	1583	13	22	-975	-2	975	multi-exon	FALSE	canonical	2	393	junction_7	89.7794751970998	4640	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTCCCTTCTGTTATC	1006	False	NA	NA	False	NA	NA	NA	127851062	127866881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
85592	chrM	-	3664	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	49	-3194	49	3194	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGATAGGGGGTCTGA	2167	False	NA	NA	False	NA	NA	NA	14021	10357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_10400_14000
85593	chrM	-	885	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10212	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGTTTGCGTGTATATAT	900	False	NA	60	True	NA	NA	NA	15288	14403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14400_15300
85595	chr3	+	963	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	4	-2	-4	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCCCGTGGTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	137570349	137572679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
85596	chrM	-	3350	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	1810	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8183	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTGGATTTGCA	900	False	NA	60	True	NA	NA	NA	15288	11741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
85597	chr11	-	544	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	244	3	-5	-3	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	433	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTAGTATTGTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	29497865	29495848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
85598	chr19	-	3170	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	52	0	0	0	multi-exon	FALSE	canonical	3	1448	junction_15	340.757138589935	3302	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3918	False	NA	NA	False	NA	NA	NA	5345431	5323959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
85599	chr4	+	1574	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	-222	7	-222	-7	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	79	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTATGGTGGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	108691575	108719317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
85600	chr8	+	387	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	120	4	-76	0	multi-exon	FALSE	canonical	3	13494	junction_2	132	419	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCTTGTCTCTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	94899411	94900192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94899504_94899754_94899821_94899963
85601	chr14	+	1626	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	63	27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	669.287535783803	1480	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGATTGTGTGTTCTTTTG	1749	False	NA	NA	False	NA	NA	NA	26359291	26377996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359411_26359469_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
85602	chr7	+	1297	5	NIC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	1	-40	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6920.42061582965	50	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTTGGAGTAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	109118427	109121534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_109118683_109118791_109118856_109119124_109119201_109119674_109119850_109120807
85603	chr13	-	1867	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	-51	89	-51	-89	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334916	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
85604	chrM	+	1657	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-301	22	-301	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	113	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATTACAGGCCTGACAAT	405	False	NA	NA	False	NA	NA	NA	9865	11522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
85605	chrM	+	3350	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85606	ERCC-00096	+	1091	1	FSM	ERCC-00096A	DQ459429	1091	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2619	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00096_+_0_1100
85607	chr1	+	2510	10	Intergenic	novelGene_485	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACGGAGTGCGCGGTAC	NA	False	NA	NA	False	NA	NA	NA	175427984	175453117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_175429132_175431502_175431658_175433620_175433748_175435381_175435584_175437199_175437368_175439711_175439896_175442302_175442476_175444087_175444206_175446616_175446751_175453015
85608	SIRV3	+	2907	7	NNC	SIRV3A	novel	1083	8	NA	NA	0	1004	intron_retention	FALSE	non_canonical	0	0	junction_3	1185.34786267811	1567	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTTTTTTTCGTAAGG	NA	False	NA	NA	False	NA	NA	NA	1963	9943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_2006_4568_4780_6057_7790_8124_8208_8755_8976_9189_9297_9431
85609	chr9	+	836	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	52	223	22	-11	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAACTGTTAAGGATCAA	NA	False	NA	NA	False	NA	NA	NA	14411964	14421650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
85610	chr6	-	1786	10	NIC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-5	intron_retention	FALSE	canonical	3	5712	junction_9	725.092024810951	20708	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446825	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
85611	chr19	+	1095	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	-57	-5	6	-2	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	7059	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATATGCCTGGCTCCTTCC	5855	False	NA	NA	False	NA	NA	NA	8848865	8853025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
85612	chrM	+	2570	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-988	0	988	mono-exon	FALSE	NA	NA	NA	NA	NA	1	77	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTACCAATTTTTACA	-3	True	NA	22	True	NA	NA	NA	1093	3663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
85613	chrUn_MU069435v1	+	494	1	Intergenic	novelGene_4730	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGACCTGCTTCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	0	494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_500
85614	chr13	+	7789	30	NNC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	-142830	-1164	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	516.248877660851	84	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCAGACTTAGTGTTATT	NA	False	NA	NA	False	NA	NA	NA	92348403	92524397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_92349054_92351976_92352148_92357461_92357592_92359615_92359804_92372080_92372241_92386335_92386446_92393201_92393310_92400227_92400346_92402434_92402500_92410459_92410631_92411237_92411426_92422384_92422520_92435662_92435771_92436781_92436866_92445951_92446067_92449080_92449195_92478753_92478920_92481462_92481610_92483240_92483357_92483834_92483954_92485656_92485845_92487737_92487960_92489732_92489853_92491272_92491538_92491585_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
85615	chr2	-	2451	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	16	2	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	335	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3648	False	NA	NA	False	NA	NA	NA	154734839	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
85616	SIRV6	+	1411	9	FSM	SIRV6A	SIRV601	1435	9	24	0	24	0	multi-exon	FALSE	canonical	3	2056	junction_3	7596.8547757855	177	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACCGGGAGTATACTT	NA	False	NA	NA	False	NA	NA	NA	1024	11826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
85617	chr13	-	2281	10	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-10	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1167.55775493597	4821	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCATTTGCCCTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	100923004	100915241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100915665_100915714_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
85618	chr11	+	767	2	Intergenic	novelGene_2439	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGTTCAATTTTACTATT	NA	False	NA	NA	False	NA	NA	NA	87343363	87344347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_87343866_87344082
85619	chr11	+	2768	11	Antisense	novelGene_ENSMUSG00000025130.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAGCCAAGGCGACGAGA	6497	False	NA	NA	False	NA	NA	NA	120450814	120463677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120452086_120452985_120453072_120453187_120453372_120453480_120453602_120454030_120454232_120454428_120454557_120454643_120454747_120458743_120458881_120458998_120459134_120462346_120462556_120463484
85620	chr10	+	560	1	Antisense	novelGene_ENSMUSG00000069682.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAACCCGGATTCGGGACG	NA	False	NA	NA	False	NA	NA	NA	29574747	29575307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_29574700_29575300
85621	SIRV2	-	686	5	FSM	SIRV2A	SIRV203	686	5	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	6222	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGACGTGGACGTTTC	NA	False	NA	NA	False	NA	NA	NA	5895	3665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
85622	chr6	-	3591	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	29343	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706204_122706329_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85623	chr15	-	1355	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	-86850	-191	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	10093.1161469368	7716	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGACCTACCTGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	80062919	79962186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524_79967533_80062737
85624	chr19	+	1579	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	83	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	926.630589825309	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTCCAATTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	47720203	47723969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47720373_47721068_47721192_47721240_47721428_47721957_47722351_47723262
85625	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	718	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
85626	chr4	-	2749	17	NNC	ENSMUSG00000096351.3	novel	2610	11	NA	NA	4511	9861	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4627	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTCGCCTCATTGC	NA	False	NA	NA	False	NA	NA	NA	156332026	156321561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_156321969_156322047_156322185_156323637_156323757_156323843_156323940_156324550_156324625_156324711_156324823_156325054_156325169_156325767_156325957_156326115_156326258_156327022_156327133_156327964_156328080_156328495_156328593_156329617_156329767_156329885_156330000_156330286_156330422_156331131_156331220_156331474
85627	chr15	+	1866	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	71	5	2	-5	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	4649	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959449	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
85628	chr4	+	5252	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1803	2591	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	35.7840746701658	335	65	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	2779	False	NA	NA	False	NA	NA	NA	147233147	147267627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147233323_147249797_147249844_147260303_147260362_147261203_147261331_147262781
85629	chr7	-	2927	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	0	456	0	-456	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	8	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165583	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
85630	chr11	+	1518	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	47	535	3	-535	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	11	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCCTCTGAAGCAGGTT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
85631	chr10	-	1866	3	Antisense	novelGene_ENSMUSG00000047642.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.5	48	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATGTTTAAAATAAATAAAT	4722	False	NA	NA	False	NA	NA	NA	121493423	121489821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_121490799_121492206_121493017_121493344
85632	chr5	+	2760	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	-229	-926	23	926	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	3322	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGAGTGGGGTCTGCA	4317	False	NA	NA	False	NA	NA	NA	29940708	29973027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
85633	chr17	-	1073	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	685	0	11	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	24413	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTGGATATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	15718560	15695967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
85634	chr2	-	989	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	171	0	4	0	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	186	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2384	False	NA	NA	False	NA	NA	NA	38533928	38478047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
85636	chr8	+	3718	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-1788	at_least_one_novel_splicesite	FALSE	canonical	2	49	junction_1	741.049787463703	16	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACCCCTACTGCTTTAA	NA	False	NA	NA	False	NA	NA	NA	111760533	111782508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760652_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
85637	chr11	-	3496	3	Antisense	novelGene_ENSMUSG00000035530.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	140	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGGCGGCGCCTGTATT	NA	False	NA	NA	False	NA	NA	NA	100215039	100210811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_100210985_100211489_100214304_100214530
85638	chr2	-	5347	14	NNC	ENSMUSG00000027496.16	novel	1862	9	NA	NA	-11910	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	635.629111089089	3146	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTGGAGTACGTGGGTAA	1373	False	NA	NA	False	NA	NA	NA	172224365	172198117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212546_172212947_172214847_172215046_172217552_172217834_172217969_172218166_172219531_172219925_172222277
85639	chr4	-	2092	2	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	336	-9	at_least_one_novel_splicesite	FALSE	canonical	3	106	junction_1	0	92	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATACAATTCGGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	127224301	127219036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220565_127223737
85640	chr9	+	2787	2	NNC	ENSMUSG00000057982.9	novel	597	2	NA	NA	0	-6706	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	883	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCACCAGCCCCGAGTTG	749	False	NA	NA	False	NA	NA	NA	22137018	22140096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_22137519_22137809
85641	chr9	+	4432	6	Antisense	novelGene_ENSMUSG00000100602.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	17.0246879560243	672	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTCCAAACTTTCGCC	NA	False	NA	NA	False	NA	NA	NA	88949032	88961784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_88949127_88949384_88949440_88949528_88949604_88957243_88957340_88957565_88959726_88959832
85643	chr9	+	734	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-200	-44	200	mono-exon	FALSE	NA	NA	NA	NA	NA	483	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96777666	96778400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
85644	chr2	-	4819	8	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	7	1280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	159.593616567141	11	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAATGCACAGCCACAT	NA	False	NA	NA	False	NA	NA	NA	121337139	121321111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121323360_121324011_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
85645	chr18	+	1907	3	NNC	ENSMUSG00000057561.11	novel	2651	2	NA	NA	-7367	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	855	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	NA	False	NA	NA	NA	46723400	46742245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46723573_46731707_46731768_46740570
85646	chr6	-	3516	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	-62	-1181	3	-6	multi-exon	FALSE	canonical	1	2	junction_14	253.514963532123	3439	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGCCTTGGTGAAATCA	NA	False	NA	NA	False	NA	NA	NA	30509779	30481232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508842_30509683
85647	chr11	+	4772	13	NIC	ENSMUSG00000020936.9	novel	4861	12	NA	NA	-6	0	combination_of_known_junctions	TRUE	canonical	3	7	junction_1	279.278534799938	29	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCCTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	102919165	102959738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_102919256_102919350_102919529_102933993_102934103_102937204_102937350_102943031_102943151_102946023_102946116_102947208_102947326_102948190_102948362_102949030_102949140_102950903_102951075_102954633_102954802_102955555_102955694_102956573
85648	chr12	-	1453	9	FSM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	-43	2257	-43	20	multi-exon	FALSE	canonical	3	904	junction_8	86.5761947650739	2359	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTTTCTTTTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	78908455	78889755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
85649	chr7	-	2618	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	-52	13	-52	13	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	2889	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCATCTGCCTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	33868052	33840125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
85650	chr7	+	4553	9	Fusion	ENSMUSG00000045752.14_ENSMUSG00000037706.18	novel	1533	8	NA	NA	-7	0	intron_retention	FALSE	canonical	3	158	junction_8	2044.8179472755	1044	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	142606523	142624824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048_142623588_142623672
85651	chr16	-	3024	5	NNC	ENSMUSG00000038965.18	novel	2906	5	NA	NA	5	645	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	854.7122322747	6381	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCCCTTTATCCTTACCT	NA	False	NA	NA	False	NA	NA	NA	17019351	16969231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16971192_16971418_16972147_16977853_16978041_16994275_16994372_17019298
85652	chr5	+	3804	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	74	-1501	-59	1501	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	29	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAAACTGACCAGATTCAC	416	False	NA	NA	False	NA	NA	NA	129097206	129102888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
85653	chr14	+	3334	11	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	-23	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	491.412952617246	3059	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTTTTTAAAGTTTATT	8868	False	NA	NA	False	NA	NA	NA	55777699	55787473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55786400_55786487
85654	chr11	+	1047	5	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGGCTTCGATTCCAAC	6814	False	NA	NA	False	NA	NA	NA	69807598	69810143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69808167_69808252_69808331_69808425_69808555_69808742_69808850_69809978
85655	chr4	-	2563	19	NNC	ENSMUSG00000096351.3	novel	2610	11	NA	NA	4511	10947	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3857	15	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGGCCCAGAATGCCTT	NA	False	NA	NA	False	NA	NA	NA	156332026	156320475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_156320524_156320605_156320647_156321836_156321969_156322047_156322185_156323637_156323757_156323843_156323940_156324550_156324625_156324711_156324823_156325054_156325169_156325767_156325957_156326115_156326258_156327022_156327133_156327964_156328080_156328495_156328593_156329617_156329767_156329885_156330000_156330286_156330422_156331131_156331220_156331474
85656	chr1	-	1478	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	26	2990	26	-2990	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	9	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGAGGCTCTCCCAAGC	NA	False	NA	NA	False	NA	NA	NA	13730744	13696543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
85657	SIRV5	+	819	10	ISM	SIRV5A	SIRV508	2085	17	19	4572	0	2821	5prime_fragment	FALSE	canonical	3	6602	junction_9	1812.35959013398	27	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATTAAGATGCAGACAAA	NA	False	NA	NA	False	NA	NA	NA	1027	6419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327
85658	chr2	-	1867	15	NNC	ENSMUSG00000109865.2	novel	1795	14	NA	NA	-32	5376	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	273.026275180202	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGAAGTTTCAAATGTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3484510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_3484550_3489814_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
85659	chrM	+	3491	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064371.1	novel	1824	1	NA	NA	0	19	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCACCACCAGCACCCAAA	-4	True	NA	4	True	NA	NA	NA	11741	15374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13994_14135
85660	chr4	+	794	4	Antisense	novelGene_ENSMUSG00000028639.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	747	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCGCATGTAGTAAGGTGG	1719	False	NA	NA	False	NA	NA	NA	119135177	119139400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_119135565_119136130_119136396_119138765_119138849_119139341
85661	chr10	+	1511	3	ISM	ENSMUSG00000025393.13	ENSMUST00000126040.8	1131	5	1734	-113	-201	0	3prime_fragment	FALSE	canonical	3	10302	junction_1	485	2040	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	127923348	127926142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127924403_127924825_127925028_127925887
85662	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	100	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
85663	chr2	-	480	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	465	1	-37	-1	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCTTCATGTTTTACA	NA	False	NA	NA	False	NA	NA	NA	38895171	38891592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
85664	chr16	-	2377	5	NNC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	854.7122322747	1502	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	17019351	16969878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16971192_16971418_16972147_16977853_16978041_16994275_16994372_17019298
85665	chr2	+	748	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	-26	7	-6	-7	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	56	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTGAATGGGCTTGGCT	5796	False	NA	NA	False	NA	NA	NA	32851725	32854048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
85666	chr5	+	1630	8	FSM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	-46	8	-46	-8	multi-exon	FALSE	canonical	3	424	junction_4	35.5154464814327	306	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAAAACTGTGTTTGAGG	7993	False	NA	NA	False	NA	NA	NA	122510467	122520957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
85667	chr9	-	1359	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	15	-8	-6	8	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	127	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGCAGCATGGTGG	NA	False	NA	NA	False	NA	NA	NA	21671584	21666729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
85668	chr4	-	6854	29	NNC	ENSMUSG00000028741.14	novel	1221	8	NA	NA	-24843	-3	intron_retention	FALSE	non_canonical	0	0	junction_7	417.151339199479	14	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGAGACTCTTTCTTTTT	4563	False	NA	NA	False	NA	NA	NA	139104730	139074758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_139075117_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077806_139079579_139080026_139081468_139081595_139082117_139082187_139082400_139082490_139084803_139084941_139086548_139086676_139087338_139087485_139087762_139087934_139088188_139088262_139088571_139088634_139089404_139089528_139090474_139090573_139090966_139091088_139092502_139092704_139092826_139092977_139093683_139093851_139094406_139094523_139097183_139097322_139098232_139098407_139098904_139099118_139101119_139101201_139102386_139102520_139102655
85669	chrM	+	1998	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-1051	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	54	False	NA	8	True	NA	NA	NA	13093	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85670	chr16	-	573	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	-41	-36	-41	36	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	20641431	20640858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_20640900_20641400
85671	chr19	+	3581	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	-14	1959	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	4323	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGACACTTTATGATATTT	NA	False	NA	NA	False	NA	NA	NA	47720106	47725986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47720261_47721068_47721192_47721240_47721428_47721957_47722351_47723262
85672	chr17	+	5832	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3355	-628	-3355	628	mono-exon	FALSE	NA	NA	NA	NA	NA	5	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153888	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
85673	chr4	-	3215	1	FSM	ENSMUSG00000065353.3	ENSMUST00000083419.3	205	1	-1093	-1917	-1093	1917	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTAATGACTGACAACTTC	NA	False	NA	NA	False	NA	NA	NA	132080930	132077715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132077700_132080900
85674	chr9	-	3718	7	NNC	ENSMUSG00000059820.15	novel	3339	7	NA	NA	373	1298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.8387369024038	8847	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCGCTGGGGTGCGCACG	479	False	NA	NA	False	NA	NA	NA	50528191	50515241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50515338_50516230_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50527957
85675	chr13	+	5712	18	NNC	ENSMUSG00000021707.6	novel	5347	6	NA	NA	-64647	-1181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	623.773337415594	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAAAAATAGTTGACAATA	166	False	NA	NA	False	NA	NA	NA	92426586	92524380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_92426671_92435660_92435771_92436781_92436866_92445951_92446067_92449080_92449195_92478753_92478920_92481462_92481610_92483240_92483357_92483834_92483954_92485656_92485845_92487737_92487960_92489732_92489853_92491272_92491853_92492157_92492208_92494434_92494541_92502172_92502300_92504692_92504809_92521232
85676	chrM	+	2837	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	-1693	0	-1693	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30200	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	380	False	NA	14	True	NA	NA	NA	12451	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12500_15300
85677	chr4	-	2428	13	NNC	ENSMUSG00000055401.15	novel	1938	6	NA	NA	471	5199	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	343.286434903695	3201	9	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCGGTCCCAGCACAACCAT	NA	False	NA	NA	False	NA	NA	NA	148235632	148224973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148225290_148225369_148225489_148227440_148227513_148227996_148228100_148228720_148228810_148229103_148229183_148229556_148229651_148229825_148230643_148230777_148230914_148231296_148231393_148231747_148231879_148233835_148234124_148235544
85678	chr14	-	1673	8	FSM	ENSMUSG00000021273.12	ENSMUST00000054963.10	2860	8	-65	1252	-61	-1252	multi-exon	FALSE	canonical	3	727	junction_5	70.2819395037456	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTCCTTGTCTTTCTC	4246	False	NA	NA	False	NA	NA	NA	63415307	63383853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980_63402079_63415131
85679	chr1	-	1115	7	NIC	ENSMUSG00000043716.14	novel	1163	7	NA	NA	-8	5	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	2530.86944327219	75	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174616	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174360
85680	chr9	-	2286	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	30	4	-1	-4	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	1438	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACTTGGGTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100916921	100864088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
85681	chr3	-	1751	14	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	54	194	combination_of_known_junctions	FALSE	canonical	3	30	junction_13	232.06477365511	1438	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTTTGTACTTTGATT	NA	False	NA	NA	False	NA	NA	NA	88857524	88830747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174_88857249_88857422
85682	chr7	-	3444	21	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1336.47833502829	214	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671914_110673416_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
85683	chr5	-	3434	15	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	-68	899	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.861261285787	2383	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCATAAGTTTTGTGACTC	NA	False	NA	NA	False	NA	NA	NA	24782533	24769443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24769892_24769993_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
85684	chrM	+	1438	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	178	-71	178	71	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	99	False	NA	-45	True	NA	NA	NA	5505	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5500_6900
85685	chrM	-	866	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTACCCTAAGATTTTG	9986	False	NA	-1	True	NA	NA	NA	3710	2844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2800_3700
85686	chr11	-	1126	10	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	1578	223	1444	0	3prime_fragment	FALSE	canonical	3	16927	junction_8	1793.60603736828	4029	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111628	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547
85687	chrM	+	3244	3	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	482	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	653	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	123	False	NA	NA	False	NA	NA	NA	9088	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_9096_11854_13951_14147
85688	chr6	-	1192	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	31	5	31	-5	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	849	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTCGGGCTGATTGC	9997	False	NA	NA	False	NA	NA	NA	125471723	125437233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
85689	chrX	-	1105	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	49	3	-28	-3	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537580	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
85690	chrM	-	2923	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	1383	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4410	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAATGAAAAGTTGAAATATG	900	False	NA	60	True	NA	NA	NA	15288	12168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
85691	chr3	-	930	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	canonical	3	93	junction_5	3476.85020672447	58	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049995	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049842
85692	chrX	+	2179	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	62	83	62	-83	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGAAAGGTTTAAATTTTC	NA	False	NA	NA	False	NA	NA	NA	12454101	12483205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
85693	chr1	-	2274	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	0	-1515	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	15	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCTCATCTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	13730770	13695068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695259_13695963_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
85694	chrM	+	1051	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	44	-138	44	138	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGTCAGCTAATTAAGC	42	False	NA	NA	False	NA	NA	NA	2794	3845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3800
85695	chr4	+	2087	4	Intergenic	novelGene_2008	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4803	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGCAGCTACAATCAGCT	NA	False	NA	NA	False	NA	NA	NA	143710523	143715400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_143710651_143710708_143712143_143714806_143715106_143715173
85696	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	88	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
85697	chr5	+	387	1	Intergenic	novelGene_926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
85698	chr15	-	2247	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	196	1974	-191	1627	multi-exon	FALSE	canonical	3	6501	junction_2	212.49836600679	210	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTCTAATTTCTTGTACC	351	False	NA	NA	False	NA	NA	NA	37007450	36999244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
85699	chr17	-	5788	2	NNC	ENSMUSG00000118642.2	novel	714	4	NA	NA	-7386	5105	intron_retention	FALSE	non_canonical	0	0	junction_1	0	58	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTACCTTCTTAATCA	NA	False	NA	NA	False	NA	NA	NA	40167104	40153888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_40159656_40167083
85700	chr6	-	3706	16	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	99	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	332.053302280757	4	91	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTCTGCCTTGGTGAAA	143	False	NA	NA	False	NA	NA	NA	30509604	30481235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482023_30482088_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509209
85701	chr7	+	661	8	Antisense	novelGene_ENSMUSG00000065219.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGGTCTTGTCGCAGGG	NA	False	NA	NA	False	NA	NA	NA	44775345	44778160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44775459_44775539_44775656_44775894_44775964_44776134_44776221_44776416_44776517_44776632_44776704_44776923_44776995_44778125
85702	chrM	-	2321	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	781	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2999	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCATATAAAGAGTATAG	900	False	NA	60	True	NA	NA	NA	15288	12770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
85703	chrM	+	2291	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	1059	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	139	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	105	False	NA	8	True	NA	NA	NA	12800	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85704	chr2	-	605	3	FSM	ENSMUSG00000036504.7	ENSMUST00000039156.7	937	3	332	0	-14	0	multi-exon	FALSE	canonical	3	774	junction_2	2.5	3711	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5532	False	NA	NA	False	NA	NA	NA	25464904	25463441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25463712_25464199_25464325_25464694
85706	chrM	+	2405	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064345.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	-544	multi-exon	FALSE	non_canonical	0	0	junction_1	0	78	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATGAGGAGGACTTAACC	-3	True	NA	22	True	NA	NA	NA	1093	4407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3120_4028
85707	chr8	-	550	4	NNC	ENSMUSG00000090137.9	novel	705	4	NA	NA	43	-4	at_least_one_novel_splicesite	FALSE	canonical	3	638	junction_3	10332.9375085479	17	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTAATTGGTGTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	70962957	70960919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70961179_70961945_70962033_70962170_70962285_70962867
85708	chr17	+	2470	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	-71	11	-71	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	33	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165501	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
85709	chr10	+	1014	5	NIC	ENSMUSG00000035242.16	novel	1044	6	NA	NA	0	-25	intron_retention	FALSE	canonical	3	6566	junction_4	420.790624895565	100	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATCCAATAAAGTGATCT	NA	False	NA	NA	False	NA	NA	NA	80662519	80665093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80662740_80664070_80664217_80664294_80664468_80664544_80664631_80664704
85710	chr1	+	1933	4	ISM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	1493	12	1412	-12	3prime_fragment	FALSE	canonical	3	19621	junction_1	2007.4056778727	7	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86455940	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_86456967_86457177_86457275_86457452_86457527_86457686
85711	chr2	-	2284	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	30	2	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	42	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3815	False	NA	NA	False	NA	NA	NA	154734672	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
85712	chr1	+	2832	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	244	800	10	-800	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	2105	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTATAGATCAGTCTTT	901	False	NA	NA	False	NA	NA	NA	58432300	58445712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
85713	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	73	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
85714	chrM	+	3209	3	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	50	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	46	False	NA	-15	True	NA	NA	NA	11791	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12098_12188_13951_14147
85715	chr3	+	1675	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	326	9	68	-4	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTAGAAGCGTGCTGGAT	NA	False	NA	NA	False	NA	NA	NA	32762981	32781113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
85716	SIRV6	+	1282	7	ISM	SIRV6A	SIRV612	1528	10	757	-13	-441	1	3prime_fragment	FALSE	canonical	0	0	junction_1	7675.93681036176	28	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACTTAGTTCAATCTTC	NA	False	NA	NA	False	NA	NA	NA	1844	11838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV6_+_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
85717	chr13	-	7565	3	Antisense	novelGene_ENSMUSG00000113565.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	72	116	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGTTCTGTGAAACTCG	NA	False	NA	NA	False	NA	NA	NA	65718748	65621603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65621991_65679817_65685010_65716762
85718	chr13	-	2640	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-37	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2591.04449429734	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	5660	False	NA	NA	False	NA	NA	NA	58549421	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549348
85719	chr16	+	2407	12	ISM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	-5	13154	-4	-13	5prime_fragment	FALSE	canonical	3	199	junction_1	25.9274257294988	1751	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTAAAAAAAAGATTTCAA	NA	False	NA	NA	False	NA	NA	NA	36648764	36679921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816
85720	chr6	-	2275	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	-145	-5	-145	5	multi-exon	FALSE	canonical	3	704	junction_1	0	3345	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTGTTAAGGTGTTTGA	9835	False	NA	NA	False	NA	NA	NA	122587191	122582356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122584095_122586654
85721	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
85722	chr4	-	1154	6	FSM	ENSMUSG00000055401.15	ENSMUST00000030858.14	1346	6	192	0	-75	0	multi-exon	FALSE	canonical	3	164	junction_5	252.506158340742	418	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	NA	False	NA	NA	NA	148236178	148230243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236070
85723	chr4	+	5387	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	58	42994	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	84.2368090563739	415	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	146206999	146257998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
85724	chr8	+	1339	3	Fusion	ENSMUSG00000074412.5_ENSMUSG00000110172.2	novel	882	3	NA	NA	-7	56	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAGAAAAAGAAAAT	5181	False	NA	NA	False	NA	NA	NA	25916860	25944776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_25917489_25935479_25935674_25944259
85725	chr4	-	1196	6	FSM	ENSMUSG00000055401.15	ENSMUST00000168503.8	1240	6	-31	75	-26	-3	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	528	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTGGTTTGAGGGCT	NA	False	NA	NA	False	NA	NA	NA	148236623	148230247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
85726	chr15	-	2618	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	235	-731	-83	-203	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	144	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCTAAGTCACACCCAAAG	675	False	NA	NA	False	NA	NA	NA	36793846	36771216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
85727	chr15	-	2980	6	NIC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	145	junction_5	1622.98596420302	62	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	1883	False	NA	NA	False	NA	NA	NA	36792638	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36792355
85728	chr9	+	2661	4	Genic_Genomic	ENSMUSG00000118728.1	novel	72	1	NA	NA	-8325	2277	multi-exon	FALSE	non_canonical	0	0	junction_1	18.3847763108502	27	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGCCTTTTTTTTGGGG	NA	False	NA	NA	False	NA	NA	NA	88949063	88959737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_88949101_88949384_88949440_88949528_88949604_88957243
85729	chr17	+	3484	10	NNC	ENSMUSG00000002768.9	novel	859	4	NA	NA	-10	3742	intron_retention	FALSE	non_canonical	0	0	junction_4	377.635463390128	2613	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGATCCAAGAGAGGCAC	NA	False	NA	NA	False	NA	NA	NA	46992039	46997779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644_46995053_46995186_46995304_46995431_46995504_46995589_46995692_46996226_46996354_46996442_46997034_46997188
85730	chr11	+	11653	54	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-141466	1616	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	66.8064956989104	1299	123	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATAATGATTTGAGAATT	NA	False	NA	NA	False	NA	NA	NA	62207819	62406859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62208858_62210195_62210368_62211820_62212042_62212215_62212274_62216314_62216458_62217934_62218076_62220266_62220481_62220801_62220966_62221621_62221751_62224488_62224985_62225323_62225486_62228368_62228523_62228926_62229074_62229683_62229898_62231236_62231458_62233823_62234177_62235456_62235714_62236059_62236142_62240172_62240322_62242204_62242375_62244061_62244157_62245190_62245299_62245396_62245510_62249675_62249844_62250589_62250760_62257788_62257984_62260117_62260250_62263901_62264447_62267458_62267587_62269339_62269480_62272232_62272297_62273986_62274206_62275547_62275672_62280516_62280621_62281806_62281858_62283328_62283510_62285963_62286055_62289090_62289263_62292025_62292094_62294624_62294678_62295235_62295293_62301644_62301760_62310423_62310606_62313699_62313893_62324387_62324529_62329166_62329340_62349278_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729_62405891_62406501
85731	chrM	+	3350	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85732	chr8	-	2498	4	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-22	-47	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	2029.25936133249	80	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGAAGATTTTAGATGT	NA	False	NA	NA	False	NA	NA	NA	43760039	43748150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43757512_43758063_43759592
85733	chr11	-	4842	12	Antisense	novelGene_ENSMUSG00000020936.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGAAGCCCCTAGGTTCGG	NA	False	NA	NA	False	NA	NA	NA	102959738	102919190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_102919527_102933991_102934108_102937209_102937347_102943028_102943150_102946022_102946115_102947207_102947326_102948190_102948360_102949028_102949138_102950901_102951073_102954631_102954801_102955554_102955692_102956571
85734	chr11	+	2435	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-7653	216	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3901.83149302991	4930	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAGTGTGAGTGGGTACT	996	False	NA	NA	False	NA	NA	NA	75616041	75656887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75616228_75623761_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
85735	chr6	-	2877	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3588.65398722139	1	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712420_122719366
85736	chr17	+	1455	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1118	0	12	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	57	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGAGCGAACCACTGTTGC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
85738	chr1	+	956	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	260	0	81	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAAACAACAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86454447	86458174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
85739	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	139	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
85740	chrM	-	1551	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1477	-5	1477	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTAGATAGAGGGTTCC	9245	False	NA	NA	False	NA	NA	NA	6943	5392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5400_6900
85741	chr16	-	4905	33	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	12	28350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2420.38102549862	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAACGCGGCATTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	87292735	87251863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255629_87258850_87259026_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87269057_87269994_87270072_87271467_87271562_87272304_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280509_87280711_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
85742	chr6	-	3722	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3001.09703810103	7309	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATGTCACAAGCTTA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712377_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85743	chr6	-	3587	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2991.63845854854	35228	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713690_122714135_122714258_122716791_122716953_122717346_122717440_122719334
85744	chr13	-	2816	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1986.9610217719	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	4626	False	NA	NA	False	NA	NA	NA	58550455	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
85745	chr16	-	2269	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	42	9	-10	-9	multi-exon	FALSE	canonical	3	963	junction_15	112.803285922348	1925	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCCGTGGCAGACGTTTT	NA	False	NA	NA	False	NA	NA	NA	3895649	3857843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
85746	chrX	+	3546	1	FSM	ENSMUSG00000083714.4	ENSMUST00000120058.2	516	1	-161	-2869	-161	2869	mono-exon	FALSE	NA	NA	NA	NA	NA	1528	122	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTTATGATCATCTTC	NA	False	NA	NA	False	NA	NA	NA	8909804	8913350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_8909800_8913400
85747	chrX	+	17615	17	Intergenic	novelGene_3905	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	127	467	13	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGCAGCAAGACCGTTT	NA	False	NA	NA	False	NA	NA	NA	33675619	34780428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_33675653_33676692_33676910_33683259_33684448_33684538_33684712_33684807_33684946_33685167_33685190_33694595_33694629_33874524_33874752_33875341_33875735_33875879_33875925_34068248_34073184_34409094_34414441_34439047_34439097_34590237_34592261_34740537_34740949_34743451_34745782_34780376
85748	chr10	-	2181	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	-272	31	-272	-31	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	1501	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGTTTAGTTAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	5755872	5749190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
85749	chr16	-	1496	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	28	-643	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2886.14405392385	73	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTGGTTTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	95928901	95922460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928766
85750	chrX	+	1939	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	8	297	8	39	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	6869	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTTTTGTTCTTTTAGA	NA	False	NA	NA	False	NA	NA	NA	161543405	161561791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
85751	chr15	+	1654	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	6	2969	6	-2969	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	495	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCAGCGGTGTCCTGGAT	NA	False	NA	NA	False	NA	NA	NA	84076447	84098499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
85752	chr2	+	5290	2	NNC	ENSMUSG00000078872.10	novel	1222	3	NA	NA	-50	178	intron_retention	FALSE	non_canonical	0	0	junction_1	0	13	90	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGTGTGGTAAACATTTT	NA	False	NA	NA	False	NA	NA	NA	176771998	176779318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176776100_176778129
85753	chr9	+	2105	4	FSM	ENSMUSG00000040204.7	ENSMUST00000045802.7	2188	4	59	24	-24	-24	multi-exon	FALSE	canonical	3	794	junction_3	40.4722126896961	2812	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATTAAAATTTTCAATAT	NA	False	NA	NA	False	NA	NA	NA	65797577	65810524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65797757_65798013_65798092_65800653_65800817_65808839
85754	chr6	+	519	1	FSM	ENSMUSG00000063171.5	ENSMUST00000204242.2	789	1	-51	321	3	-321	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGACACCGTGCAGATCTC	NA	False	NA	NA	False	NA	NA	NA	148256156	148256675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148256700
85755	chr11	-	3415	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	8	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1126.59438104771	7	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCATTCTCTTCATTTA	9689	False	NA	NA	False	NA	NA	NA	106679285	106671187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106671548_106671611_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
85756	chrM	-	5804	3	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	4495	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATGATGAGCTCATGTAA	900	False	NA	60	True	NA	NA	NA	15288	9056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_12554_12784_13953_14149
85757	chr1	-	709	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	-21	203	-21	-203	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGCAAGCCCAGGCATCAG	NA	False	NA	NA	False	NA	NA	NA	86837426	86836717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836700_86837400
85758	chr14	-	2973	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	27	-383	-9	215	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	602	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTCAAGTTAAAATGTTC	8775	False	NA	NA	False	NA	NA	NA	52341435	52310618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
85759	chrM	-	3244	3	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	4463	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1433	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTTATGTGGTTTCGTTT	900	False	NA	60	True	NA	NA	NA	15288	9088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_9096_11854_13953_14149
85760	chrX	+	5748	22	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-6	50316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1512.23494557302	555	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCTTTACACCCCAACC	NA	False	NA	NA	False	NA	NA	NA	161543391	161612404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343_161564417_161565226_161565323_161567319_161567411_161569612_161569688_161570554_161570675_161573607_161573807_161580637_161580807_161590480_161590572_161594286_161594387_161594532_161594592_161612234
85761	chr6	+	3617	10	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4307	38	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCCGAAGCCCAGCCTA	8810	False	NA	NA	False	NA	NA	NA	122704783	122719478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707109_122708469_122708555_122709328_122709432_122709728_122709829_122712373_122712570_122713535_122713701_122714016_122714257_122716788_122716953_122717346_122717435_122719327
85762	chr17	+	2680	18	ISM	ENSMUSG00000024422.15	ENSMUST00000025292.15	3351	20	1936	1	1930	-1	3prime_fragment	TRUE	canonical	3	280	junction_3	380.116709449569	2646	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTTATGTCATTGCT	1201	False	NA	NA	False	NA	NA	NA	36192646	36203561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024_36194217_36194706_36194818_36194911_36195028_36196386_36196598_36196775_36196875_36196981_36197135_36198290_36198432_36198726_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
85763	chr11	+	515	2	Genic_Genomic	ENSMUSG00002076990.1	novel	135	1	NA	NA	-328	244	multi-exon	FALSE	canonical	3	320	junction_1	0	107	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGGGGGGAGAGGCT	4511	False	NA	NA	False	NA	NA	NA	106391740	106392447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_106391767_106391958
85764	chr6	-	2893	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-57	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3013.30654281765	161768	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8988	False	NA	NA	False	NA	NA	NA	122719406	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706344_122708347_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85765	chrM	-	3350	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	1810	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5564	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTGGATTTGCA	900	False	NA	60	True	NA	NA	NA	15288	11741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
85766	chr6	-	1064	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	61	425	18	0	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTTTTTGTACTCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	33037134	32769576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
85767	chr18	-	2683	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	9	357	9	-357	multi-exon	FALSE	canonical	3	5978	junction_5	267.479905787332	59	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGCCTCTCATGGGCCT	208	False	NA	NA	False	NA	NA	NA	35087401	35070823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
85768	chr8	-	2858	9	NNC	ENSMUSG00000031701.7	novel	2919	9	NA	NA	54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	266.794601472743	2	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCAGCATTCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	86281919	86264261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_86266037_86266678_86266807_86266936_86267073_86273139_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
85769	chr1	-	2801	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	43	-1533	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	114	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAACAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	13730727	13695086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13696799_13696915_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
85770	chrM	+	3435	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	112	-1723	112	1723	mono-exon	FALSE	NA	NA	NA	NA	NA	19	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	108	False	NA	47	True	NA	NA	NA	11853	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11900_15300
85771	chr3	+	3664	3	NIC	ENSMUSG00000042312.11	novel	715	4	NA	NA	-2666	-9	intron_retention	FALSE	canonical	3	229	junction_1	83.5	3395	57	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACACAGATGCTTATTT	NA	False	NA	NA	False	NA	NA	NA	90419075	90431879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90422327_90423156_90423350_90431659
85772	chr13	-	1692	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	48	1798	2	7	multi-exon	FALSE	canonical	3	331	junction_5	157.730704704606	1082	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTCTTTATTTTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	104314929	104280454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
85773	chrM	+	2706	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	644	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28019	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	314	False	NA	-25	True	NA	NA	NA	12385	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85774	chr1	-	2552	6	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	2	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	681.851772748301	12	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCACGAGCTTTGGTTC	2312	False	NA	NA	False	NA	NA	NA	93729654	93720304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93727743_93728218_93728633_93729411
85775	chr11	-	5628	28	Fusion	ENSMUSG00000018287.13_ENSMUSG00000040712.17	novel	4632	23	NA	NA	7	-19	multi-exon	FALSE	canonical	3	17	junction_20	316.306930170798	4006	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTCTGACTTGTACCTG	8396	False	NA	NA	False	NA	NA	NA	70578762	70554615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574104_70574177_70574715_70574852_70574930_70574999_70576888_70576993_70577172_70577268_70578711
85776	chr3	+	1917	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	18	295	18	-290	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	2997	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTTTGAAGTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	89986864	90007913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
85777	chr5	+	2292	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	-884	2	-884	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	366	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGTCTGGTGGTGTCAA	NA	False	NA	NA	False	NA	NA	NA	104582099	104588914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
85778	chr1	-	842	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	-3	-161	3	mono-exon	FALSE	NA	NA	NA	NA	NA	68	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
85779	chr5	+	2717	7	Antisense	novelGene_ENSMUSG00000025747.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	318	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTCCTGCTGGGAAAC	738	False	NA	NA	False	NA	NA	NA	30264281	30278623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30266132_30266965_30267038_30268233_30268410_30269082_30269187_30273465_30273638_30276630_30276705_30278354
85780	chr11	-	2667	12	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	-71	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	341.87910482223	24	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	NA	False	NA	NA	NA	60701988	60678929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680508_60681034_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
85781	chrM	+	2037	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-1090	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	15	True	NA	-31	True	NA	NA	NA	13054	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85783	chr4	+	5593	5	Intergenic	novelGene_2031	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_3	30.2603288151335	18	64	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGAAGCAAGTTCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	146223572	146258378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146223715_146240246_146240293_146250678_146250737_146251579_146251707_146253158
85784	chr4	+	1155	7	Genic_Genomic	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-156409	2138	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	19	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGAACCGTACAGGCGGC	NA	False	NA	NA	False	NA	NA	NA	155797593	155975698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_155797707_155973320_155973624_155973888_155974051_155974120_155974180_155974954_155975123_155975200_155975362_155975509
85785	chrX	-	2907	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	195	-11	intron_retention	FALSE	canonical	0	0	junction_10	434.138468694033	144	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTTTTACAGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	158921110	158905215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158920882
85786	chr3	-	1765	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	14	36	-12	-36	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTATTTTTCTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	157630700	157599920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
85787	chr7	+	3127	6	NNC	ENSMUSG00000030649.19	novel	2797	5	NA	NA	-113	-2	intron_retention	FALSE	canonical	3	40	junction_1	204.430330430687	157	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAATAACTTGGTCCAGA	8159	False	NA	NA	False	NA	NA	NA	101545956	101551050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101546021_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
85788	chrM	-	6035	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	4495	multi-exon	FALSE	non_canonical	0	0	junction_1	0	931157	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATGATGAGCTCATGTAA	900	False	NA	60	True	NA	NA	NA	15288	9056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
85789	chr11	+	12879	54	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-140516	1615	intron_retention	FALSE	non_canonical	0	0	junction_1	64.0894100003277	78	219	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTATAATGATTTGAGAAT	NA	False	NA	NA	False	NA	NA	NA	62208769	62406858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62208855_62210189_62210368_62211820_62212042_62212215_62212274_62216313_62216458_62217933_62218072_62220265_62220481_62220801_62220966_62221621_62221751_62224488_62224985_62225323_62225486_62228368_62228523_62228926_62229074_62229683_62229898_62231236_62231458_62233823_62234177_62235456_62235709_62240172_62240322_62242204_62242375_62244061_62244157_62245190_62245307_62245408_62245515_62249683_62249844_62250587_62250761_62257788_62257984_62260117_62260218_62263902_62264447_62267458_62267581_62269318_62269480_62272232_62272297_62273986_62274206_62275547_62275672_62280516_62280621_62281806_62281856_62283326_62283510_62285963_62286055_62289096_62289263_62292025_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310606_62313699_62313893_62324387_62324529_62329166_62329340_62349278_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400104_62400199_62400645_62400678_62402963_62403098_62403729_62405717_62406325
85790	chrM	+	2901	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	449	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	782	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	119	False	NA	10	True	NA	NA	NA	12190	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85791	chr5	-	658	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	26	-48	26	48	mono-exon	FALSE	NA	NA	NA	NA	NA	71	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	92288762	92288104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92288100_92288800
85792	chrM	+	1379	2	Genic_Genomic	ENSMUSG00000064351.1	novel	1545	1	NA	NA	127	68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	48	False	NA	-96	True	NA	NA	NA	5454	6940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_5961_6067
85793	chr13	-	1706	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	476	0	-476	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	1106	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314337	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
85794	chr3	-	2915	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	33	9	33	-9	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	1005	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAATGTGTTTTGTTTTTC	2749	False	NA	NA	False	NA	NA	NA	65300011	65287084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
85795	chr11	+	1959	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	82	443	-25	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	12	2	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940600	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
85796	chr5	-	8111	27	NNC	ENSMUSG00000029616.10	novel	748	4	NA	NA	13	30595	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	224.039650046369	5553	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGAACCTCAGTGCGCAAG	3244	False	NA	NA	False	NA	NA	NA	121590537	121536057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121536125_121545254_121545346_121546261_121546399_121547148_121547265_121551066_121551143_121552549_121552655_121552857_121552942_121555437_121555552_121555989_121556080_121558525_121558695_121559352_121559467_121561597_121561805_121562575_121562664_121564030_121564214_121564788_121564890_121568667_121568818_121569520_121569647_121572886_121573130_121573519_121573642_121574716_121574786_121575668_121575767_121576788_121576901_121577396_121577544_121577889_121581172_121582038_121583636_121585203_121585343_121590253
85797	chr11	-	1892	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	-66	0	-66	0	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	2135	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	115977887	115969398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
85798	chr13	-	1539	8	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_7	174.090991924877	656	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8482	False	NA	NA	False	NA	NA	NA	34119956	34101909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551_34119778_34119904
85799	chr7	+	1481	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	48	4	-7	-4	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	651	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTGCCAGACCTCTTC	NA	False	NA	NA	False	NA	NA	NA	142606523	142621667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
85800	chr15	+	2987	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	13	0	-3	0	multi-exon	FALSE	canonical	3	627	junction_1	138.867742834684	2440	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGGCTCTCATTGATTT	9648	False	NA	NA	False	NA	NA	NA	44291519	44301652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
85801	chr18	+	1554	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	194	-1	-194	mono-exon	FALSE	NA	NA	NA	NA	NA	33	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGCTGGAGACCCAGTT	NA	False	NA	NA	False	NA	NA	NA	48179712	48181266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181300
85802	chrM	+	2010	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-1063	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	313	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	42	False	NA	-4	True	NA	NA	NA	13081	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85803	chrM	+	801	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	72	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	70	False	NA	-51	True	NA	NA	NA	14216	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14307_14577
85804	chr19	+	1231	3	NNC	ENSMUSG00000025209.6	novel	2195	5	NA	NA	-724	-6377	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3250	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGTCATGGCTACGGTTA	934	False	NA	NA	False	NA	NA	NA	44993377	44994824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44994380_44994501_44994608_44994701
85805	chr9	+	988	9	NNC	ENSMUSG00000032602.7	novel	1783	9	NA	NA	-2656	13958	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	297.273416865686	1006	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAATATAGTGTTTTATAG	NA	False	NA	NA	False	NA	NA	NA	108547038	108575798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030_108561164_108575607
85806	chr6	+	8393	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	-185	-6591	-157	6591	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	144	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGGTGGAATGTATTT	5687	False	NA	NA	False	NA	NA	NA	67243809	67267886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
85807	chr5	+	354	1	Intergenic	novelGene_914	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCCCGGCGGATCTTTCC	NA	False	NA	NA	False	NA	NA	NA	146197788	146198142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
85808	chr17	+	3950	5	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	132	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGTGCTTCAGCTACTGC	NA	False	NA	NA	False	NA	NA	NA	47085425	47093561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_47086661_47088975_47089197_47089334_47089446_47090210_47090347_47091314
85809	chr1	+	2266	6	NIC	ENSMUSG00000026087.12	novel	969	6	NA	NA	23	-5	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	395.588978612903	28	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCATCTCCGCTGATGGAG	NA	False	NA	NA	False	NA	NA	NA	37929646	37937414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_37931254_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
85810	chr11	+	1345	1	Intergenic	novelGene_2208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1031	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAATGCCCTTCCCTTGTG	5807	False	NA	NA	False	NA	NA	NA	6307350	6308695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_6307400_6308700
85811	chr6	-	3742	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	332	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	3652.41490113048	584	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	1701	False	NA	NA	False	NA	NA	NA	122778267	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122774756_122774839_122778180
85812	chr8	-	2166	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	54	699	54	-699	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	6	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCAGTAGTTAAACCATGT	NA	False	NA	NA	False	NA	NA	NA	86281919	86264960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
85813	chr4	-	2120	6	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	2	-2	intron_retention	FALSE	canonical	3	295	junction_5	32.2886977129769	909	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9094	False	NA	NA	False	NA	NA	NA	155976224	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155973626_155973890_155974054_155974125_155975127_155975209_155975360_155975508_155975873_155976087
85814	chrX	+	857	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	-3	1	0	-1	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	2049	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTTTGTTTCTGATTCT	NA	False	NA	NA	False	NA	NA	NA	73314462	73316740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
85815	chrM	-	1236	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1162	-5	1162	mono-exon	FALSE	NA	NA	NA	NA	NA	33	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCATCCTGTTCCTGCTCC	9245	False	NA	NA	False	NA	NA	NA	6943	5707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5700_6900
85816	chr11	+	1282	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	-28	-2	-28	-1	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	14677	16	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGACTCTGCGGTAG	NA	False	NA	NA	False	NA	NA	NA	9068478	9086169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
85817	chr10	-	785	1	Antisense	novelGene_ENSMUSG00000110841.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	141	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGTATCTTTCAATGAA	NA	False	NA	NA	False	NA	NA	NA	45752170	45751385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_45751400_45752200
85818	chrM	-	1534	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1460	-5	1460	mono-exon	FALSE	NA	NA	NA	NA	NA	22	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCGCTCAGGCTCCGAAT	9245	False	NA	NA	False	NA	NA	NA	6943	5409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5400_6900
85819	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2766	72	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85820	chr13	-	6739	45	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	0	30189	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	597.62057810278	1	59	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGTTTAAAGAAAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	6698761	6599614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6599723_6602674_6602773_6603213_6603367_6605386_6605504_6605586_6605685_6606577_6606737_6607795_6607912_6608179_6608286_6609396_6609519_6610064_6610180_6610637_6610735_6611988_6612122_6613409_6613549_6615021_6615144_6617387_6617519_6618699_6618819_6618932_6619012_6619235_6619344_6625076_6625135_6627400_6627549_6628473_6628621_6629451_6629557_6629685_6630152_6630201_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
85821	chr8	+	1502	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	15	-2	15	2	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	2423	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTTGTGTAATTTGCTT	NA	False	NA	NA	False	NA	NA	NA	22901391	22919683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
85822	chr18	-	3309	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	-7	0	7	multi-exon	FALSE	canonical	3	1260	junction_1	0	2671	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTTTTTTTTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	37777257	37773536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
85823	chr4	+	2322	11	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	14	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGGGGGCAGCGTCAGA	255	False	NA	NA	False	NA	NA	NA	137469054	137485993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882
85824	chr19	+	1355	8	FSM	ENSMUSG00000108414.2_ENSMUSG00000064721.6	ENSMUST00000206135.2	744	8	-614	3	57	-1	multi-exon	FALSE	canonical	3	781	junction_1	116.047316176794	49	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTATTGTGATGGCTTA	NA	False	NA	NA	False	NA	NA	NA	8700907	8703804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
85825	chr13	-	2211	16	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2515.83804990173	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	4784	False	NA	NA	False	NA	NA	NA	58550297	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58539266_58539807_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
85826	chrM	-	3109	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1218	-1372	-1218	1372	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTCTCAGCCAATGAAAA	900	False	NA	60	True	NA	NA	NA	15288	12179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12200_15300
85827	chr11	+	2657	14	Antisense	novelGene_ENSMUSG00002076300.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACGCTGCAAAAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	75191177	75231218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75192229_75193492_75193581_75196933_75197041_75197939_75198117_75200957_75201096_75203128_75203274_75203517_75203659_75203803_75203995_75204124_75204195_75205637_75205739_75206927_75207062_75209235_75209357_75219497_75219587_75231114
85829	chr15	+	1982	4	FSM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	3	-4	3	4	multi-exon	FALSE	canonical	3	662	junction_2	39.6176167324027	178	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAGTTGAAGT	2246	False	NA	NA	False	NA	NA	NA	82031454	82058099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953
85830	chr16	+	2866	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	95	0	31	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	54	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470496	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
85831	chr2	-	2592	8	NNC	ENSMUSG00000070953.14	novel	600	5	NA	NA	2	4146	intron_retention	FALSE	canonical	1	2	junction_1	164.975693942583	10	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTGAAAGGTTTCA	2797	False	NA	NA	False	NA	NA	NA	34689764	34663421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_34664852_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
85832	chr14	-	2476	10	NNC	ENSMUSG00000021905.15	novel	2953	3	NA	NA	-17474	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	21.6846079563875	51	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGTGTCTTTTATTTT	5533	False	NA	NA	False	NA	NA	NA	31825160	31804828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31805204_31807366_31807523_31807804_31808008_31813589_31813715_31814022_31814087_31817319_31817428_31818442_31818584_31821340_31821587_31822940_31823050_31824211
85833	chr4	+	1309	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	43	7	9	-7	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	181	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTATGGTGGCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	108691840	108719317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
85834	chr15	+	1826	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	66	1819	14	8	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	15140	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAGAATGTACATTAA	NA	False	NA	NA	False	NA	NA	NA	80832756	80853328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
85835	chr2	+	1815	7	NNC	ENSMUSG00000008333.13	novel	636	5	NA	NA	-26	-1108	at_least_one_novel_splicesite	FALSE	canonical	2	34	junction_1	372.698157584213	2458	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGGTTTATTGTCCTA	2054	False	NA	NA	False	NA	NA	NA	142905024	142913665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_142905947_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
85836	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256153	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148257100
85837	chr17	+	5832	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3355	-628	-3355	628	mono-exon	FALSE	NA	NA	NA	NA	NA	2004	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153888	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159700
85838	chr2	+	4665	12	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	-466	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	3373.81559260321	796	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAATATGGTTCCACTGT	7481	False	NA	NA	False	NA	NA	NA	75489610	75499285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741_75498260_75498344
85839	chr15	-	3322	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	53	-3	7	3	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	85	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTGTGTTATCCCATGT	862	False	NA	NA	False	NA	NA	NA	11996091	11981421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
85840	chr18	+	5995	35	NNC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	-4	34585	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	395.531174542035	3097	63	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCGATGACGCAGCCGCAC	6	True	NA	NA	False	NA	NA	NA	9958172	10030074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320_9994607_9994661_9996249_9997172_9997281_9997716_9997775_10000494_10000623_10001769_10001864_10002367_10002434_10004895_10005015_10005633_10005716_10007766_10007850_10009953_10010083_10012212_10012269_10016534_10016645_10017990_10018098_10024505_10024682_10029915
85841	chr8	+	763	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	75	1159	75	17	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGCCCACAGCTGGGCC	NA	False	NA	NA	False	NA	NA	NA	27750431	27765543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_27750579_27763350_27763531_27765107
85842	chr6	-	3432	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	48	5	-11	-5	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	3408	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCCTTGGTGAAATCAT	13	False	NA	NA	False	NA	NA	NA	30509734	30481231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
85843	chr13	-	3138	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	-52	5697	-52	452	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	2277	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTCTAGACAAGGCTTT	NA	False	NA	NA	False	NA	NA	NA	9046171	9022063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
85844	chr3	+	3768	16	Fusion	ENSMUSG00000105176.2_ENSMUSG00000027680.16	novel	3014	16	NA	NA	-2	745	multi-exon	FALSE	non_canonical	0	0	junction_5	344.7483075456	16059	103	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAAGATCTTCTTGTCAT	4847	False	NA	NA	False	NA	NA	NA	34074244	34125216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100739_34101121_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
85846	chr14	-	2703	9	NNC	ENSMUSG00000060373.16	novel	2847	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1321.75956942819	4	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8745	False	NA	NA	False	NA	NA	NA	52341465	52310833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52311639_52311697_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
85847	chr2	+	1856	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	5	0	1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	1094	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
85848	chr10	+	2712	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	-62	-4	-62	1	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	2806	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGCCTTGTGTCTCTT	6927	False	NA	NA	False	NA	NA	NA	60113386	60138377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
85849	chr13	-	1232	6	NIC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-82	0	combination_of_known_splicesites	FALSE	canonical	3	94	junction_5	331.741827329627	134	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	34089235	34063798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34089090
85850	chr6	-	3508	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	-28	5	-28	-5	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	3447	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCCTTGGTGAAATCAT	NA	False	NA	NA	False	NA	NA	NA	30509810	30481231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
85851	chr14	+	1143	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-102	-705	-102	705	mono-exon	FALSE	NA	NA	NA	NA	NA	82	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669335	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
85852	chr4	-	2325	9	NNC	ENSMUSG00000028907.8	novel	1603	8	NA	NA	11	771	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	488.029968342109	6178	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATGGGAGAGGGATCTTC	NA	False	NA	NA	False	NA	NA	NA	124587382	124571181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_124571878_124571915_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
85853	chr9	+	743	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-35	-218	-35	218	mono-exon	FALSE	NA	NA	NA	NA	NA	2043	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777675	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
85854	chrM	+	2480	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-898	0	898	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTATCCACGCTTCCGT	-3	True	NA	22	True	NA	NA	NA	1093	3573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3600
85855	ERCC-00096	+	1091	1	FSM	ERCC-00096A	DQ459429	1091	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2613	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_ERCC-00096_+_0_1100
85856	chr6	+	2255	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	26	-1	17	0	multi-exon	FALSE	canonical	3	4878	junction_1	99	34479	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	NA	False	NA	NA	False	NA	NA	NA	117894280	117902583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
85857	chr14	+	1131	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	-37	-13	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	272.312292001298	670	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTCAAGGTGGATCTTT	NA	False	NA	NA	False	NA	NA	NA	8508448	8520736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_8508579_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
85858	chr3	+	2269	9	NNC	ENSMUSG00000078578.10	novel	2504	8	NA	NA	-77	221	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1014.05201265763	5	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAATCAAGTGTTCCCACA	NA	False	NA	NA	False	NA	NA	NA	135144430	135172932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955_135171947_135172212
85859	chr6	-	3225	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	65	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3013.30654281765	16	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	9881	False	NA	NA	False	NA	NA	NA	122719639	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706562_122708466_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
85860	chr7	+	1536	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	449	4	3	-4	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	36	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCTTGGTGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	140462329	140478551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
85861	chr11	+	2159	10	NNC	ENSMUSG00000020513.16	novel	1964	10	NA	NA	-48	314	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	14.4615283586879	2	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	86435768	86458500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862_86458193_86458266
85862	chr17	-	3817	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	42	-1187	-2	1187	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	2588	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGACAGCAATAAAACACTA	4815	False	NA	NA	False	NA	NA	NA	25179621	25160256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
85863	chr3	-	1310	7	FSM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	-179	8	-96	-1	multi-exon	FALSE	canonical	3	1573	junction_5	145.593040126695	10676	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTTAGTCTTGGTTTTG	7011	False	NA	NA	False	NA	NA	NA	89906183	89902760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905311_89905834
85865	chr13	-	5939	3	Intergenic	novelGene_1309	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	354	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTAAATTTCCTTTGG	NA	False	NA	NA	False	NA	NA	NA	8952602	8811880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_8817419_8946325_8946475_8952350
85866	chr8	-	2908	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	-11	-730	-7	730	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	1167	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGGTTCTGCCATGTAG	NA	False	NA	NA	False	NA	NA	NA	85620557	85612291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
85867	chr13	-	1986	17	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	7	449	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	99.5388586181296	202	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGTCTTCTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	100628868	100596276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
85868	chr13	-	7207	49	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-83	31605	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	586.341309742386	1762	36	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGGGGCCAGTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	6686769	6598198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6598260_6599611_6599723_6602674_6602773_6603213_6603367_6605386_6605504_6605586_6605685_6606577_6606737_6607795_6607925_6608191_6608281_6609390_6609519_6610064_6610180_6610637_6610735_6611988_6612122_6613409_6613549_6615021_6615141_6617382_6617519_6618699_6618819_6618932_6619012_6619235_6619398_6620633_6620737_6623074_6623196_6624393_6624468_6625052_6625163_6627422_6627549_6628473_6628621_6629451_6629557_6629685_6630152_6630201_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6686596
85869	chr13	-	2656	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-1944	8	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_21	285.670552208471	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTACTTGGTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	6688630	6631209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6688506
85870	chr12	+	1513	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2510	-2	809	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	1165	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	9257	False	NA	NA	False	NA	NA	NA	100165785	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
85871	chr6	-	1479	2	ISM	ENSMUSG00000079477.10	ENSMUST00000113597.8	1859	7	15510	-288	15510	-38	3prime_fragment	FALSE	canonical	3	1571	junction_1	0	18	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAGAGACGAACGTGATG	382	False	NA	NA	False	NA	NA	NA	87981255	87976136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_87977513_87981152
85872	chr5	+	2526	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	-530	-21	530	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	211	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCGAATTTCACTGG	NA	False	NA	NA	False	NA	NA	NA	108048416	108057401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
85873	chr11	+	1493	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-7	-17	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	8240	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTTTTAAAAGCCTGC	901	False	NA	NA	False	NA	NA	NA	96932413	96940022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
85874	chr7	+	1906	11	NNC	ENSMUSG00000019738.16	novel	819	6	NA	NA	-7811	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	580.911869391563	3618	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	29923561	29932812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29923775_29923899_29923973_29926270_29926463_29927029_29927128_29930552_29930695_29931004_29931830_29931906_29931962_29932174_29932249_29932331_29932411_29932491_29932544_29932709
85875	chr17	-	4062	7	Antisense	novelGene_ENSMUSG00000006818.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	506	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCAGGCAACTAGGGT	NA	False	NA	NA	False	NA	NA	NA	13237006	13225730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_13225849_13226280_13226420_13226744_13226953_13227067_13227273_13229405_13229522_13232317_13232498_13233910
85876	chr17	+	4424	3	FSM	ENSMUSG00000049672.16	ENSMUST00000062369.14	3625	3	40	-839	40	390	multi-exon	FALSE	canonical	3	64	junction_1	68.5	28	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTCAGGTAAAAATGTGG	NA	False	NA	NA	False	NA	NA	NA	69690353	69698584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_69690416_69692415_69692500_69694306
85877	chrX	-	2901	15	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	5	70	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_14	624.604201205264	1510	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	100129621	100122745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877_100129064_100129193_100129261_100129344
85878	chr6	-	2581	7	ISM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	333	-741	92	338	3prime_fragment	FALSE	canonical	3	1123	junction_1	263.130512610504	4	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCATGCCTGGTTATAG	NA	False	NA	NA	False	NA	NA	NA	124942078	124935037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686
85879	chr9	-	1639	12	NNC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	349	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	2075.65946903748	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89995993	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89995935
85880	chr8	+	3011	6	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-9	0	intron_retention	FALSE	canonical	3	972	junction_2	56.9160785718763	89	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	NA	False	NA	NA	NA	86026251	86034699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86026622_86027737_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
85881	chrM	+	1613	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-3	-65	-3	65	mono-exon	FALSE	NA	NA	NA	NA	NA	19	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAGATATTAGTAAAAT	-2	True	NA	NA	False	NA	NA	NA	5324	6937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
85882	chr6	-	1671	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	2012	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	124942382	124935778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
85883	chr8	+	1256	6	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	-7	34225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2672.65533879698	745	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGGCTCTCTGCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	57964933	58003258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999_57967408_58003011
85884	chr6	+	6519	34	NNC	ENSMUSG00000030335.7	novel	3427	3	NA	NA	-23794	711	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.245665475534	3613	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAGAGAGCAAGGTCAAC	8290	False	NA	NA	False	NA	NA	NA	125144969	125171232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125145283_125145552_125145716_125145828_125145952_125146776_125146962_125147096_125147180_125147691_125147787_125147880_125148057_125148360_125148517_125148598_125148722_125148794_125148911_125149952_125150126_125150322_125150487_125150562_125150649_125150742_125150876_125151187_125151322_125153105_125153193_125153616_125153795_125154296_125154515_125154770_125154888_125156200_125156376_125156475_125156566_125156659_125156792_125157940_125158140_125160876_125161025_125161191_125161313_125161394_125161526_125162656_125162799_125163061_125163247_125163718_125163776_125164039_125164116_125166725_125166868_125168456_125169397_125169478_125169590_125170185
85885	chr4	+	2438	12	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCAGTGGCGGGAGCGTA	248	False	NA	NA	False	NA	NA	NA	137469047	137523606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481352_137482395_137482514_137482934_137483061_137485882_137486043_137523551
85886	chr9	+	1116	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	164	8	-13	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	5893	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAAATGAGCTGGTCAC	NA	False	NA	NA	False	NA	NA	NA	20914197	20920127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
85887	chr2	+	1641	11	NNC	ENSMUSG00000039356.16	novel	1686	9	NA	NA	2	53556	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	370.360905064236	2421	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAGTTTTAAACACA	NA	False	NA	NA	False	NA	NA	NA	31560732	31624917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501_31571195_31602230_31602238_31624796
85888	chr4	+	5385	7	NNC	ENSMUSG00000085525.8	novel	280	2	NA	NA	-6767	42994	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	83.0020080078388	358	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	146200133	146257998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146200273_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158
85889	chr15	+	3429	17	FSM	ENSMUSG00000022394.15	ENSMUST00000023029.15	3487	17	58	0	-7	0	multi-exon	FALSE	canonical	3	631	junction_15	40.713125570877	57570	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	NA	False	NA	NA	NA	81548147	81572516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
85890	chr17	+	1010	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	35	23	-9	-23	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGTTGGTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	26342508	26345564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
85892	chr15	-	4028	28	NNC	ENSMUSG00000022370.14	novel	1223	7	NA	NA	-68675	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	404.049444203019	336	7	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	NA	False	NA	NA	NA	55489819	55397489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653_55421133_55421895_55421977_55426097_55426171_55426330_55426485_55428008_55428065_55429585_55429733_55430571_55430690_55432439_55432554_55434688_55434786_55436289_55436363_55440841_55440961_55449705_55449881_55452051_55452160_55460737_55460899_55466578_55466696_55470037_55470194_55474332_55474430_55480877_55481143_55483031_55483271_55484017_55484131_55488784_55488850_55489530
85893	chr7	-	873	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	73	3	5	2	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	5463	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTACCAAGGCTGTGAG	7008	False	NA	NA	False	NA	NA	NA	12768661	12765943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
85894	chr4	-	2347	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	34	-778	-32	778	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	268	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGGATCTTCATCTTAT	NA	False	NA	NA	False	NA	NA	NA	124587359	124571174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
85895	chr4	+	4108	6	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4865	1658	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	73.1289272449692	24778	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTTCCAGGTTCCAGG	NA	False	NA	NA	False	NA	NA	NA	147394995	147419849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724_147415910_147415998_147419043_147419352
85896	chr11	+	835	6	FSM	ENSMUSG00000018858.16	ENSMUST00000153983.8	2596	6	6	1755	1	0	multi-exon	FALSE	canonical	3	944	junction_3	61.9825781974258	3158	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	NA	False	NA	NA	NA	115294583	115301745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
85897	chr15	+	3209	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	63	-424	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	224.467626965573	2064	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACTGATGTCCCGTGCTG	NA	False	NA	-31	True	NA	NA	NA	101982361	102005184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687_102004437_102004503
85898	chrM	+	3272	3	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12580_12657_13943_14139
85899	chr2	+	7011	4	Fusion	ENSMUSG00000078906.10_ENSMUSG00000080888.4	novel	919	4	NA	NA	-42442	200734	intron_retention	TRUE	non_canonical	0	0	junction_1	38.1837661840736	3	95	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTTATAAGACTTGCC	NA	False	NA	NA	False	NA	NA	NA	174809591	175132445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174809798_174858430_174858558_174928631_174933180_175130315
85900	chr17	-	2790	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	32	317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.8895179622	1709	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTGTGTGTATTTTG	4858	False	NA	NA	False	NA	NA	NA	25179578	25161126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25161286_25161399_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
85902	chr6	+	3101	15	FSM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	4	-176	4	176	multi-exon	FALSE	canonical	3	31	junction_7	7.03816128585544	50	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTTTGAAGAAAGGAAGAC	1285	False	NA	NA	False	NA	NA	NA	72391294	72407871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
85903	chr11	+	2878	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	-5	-1732	-5	1732	multi-exon	FALSE	canonical	3	238	junction_1	100.921751867474	103	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCACTGTACCAACCTTT	NA	False	NA	NA	False	NA	NA	NA	78427181	78434295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
85904	chr2	-	960	1	FSM	ENSMUSG00000081400.2	ENSMUST00000119790.2	793	1	-24	-143	-24	143	mono-exon	FALSE	NA	NA	NA	NA	NA	3816	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTTATTCAATCACAAAA	NA	False	NA	NA	False	NA	NA	NA	83184317	83183357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_83183400_83184300
85905	chr15	-	2059	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	360	3	360	-3	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	23	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCCAGCGTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	83056433	83037697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
85906	chr13	-	1983	7	ISM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	545	1935	373	825	3prime_fragment	FALSE	canonical	3	2192	junction_4	106.91182763796	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGGTCATGTGTCCAGA	3384	False	NA	NA	False	NA	NA	NA	55510051	55493580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933
85907	chr1	-	545	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	14	10	14	0	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	750	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGGTTACTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	120048794	120041019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
85908	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	7	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
85909	chr17	-	1074	2	Intergenic	novelGene_92	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGTTGATACATTTAT	NA	False	NA	NA	False	NA	NA	NA	23097164	23095198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_23095458_23096349
85910	chr17	-	3243	8	NNC	ENSMUSG00000024026.14	novel	1127	8	NA	NA	-17	1602	intron_retention	FALSE	non_canonical	0	0	junction_1	1448.66921338031	5552	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACTCCAAACTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	30845800	30810232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_30811227_30811707_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441_30831771_30845755
85911	chr13	+	4962	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	531	3196	-80	-3196	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	4526	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAAAGAGAACTCGTAGA	NA	False	NA	NA	False	NA	NA	NA	90237772	90257180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
85912	chr8	-	3169	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	-9	-387	-9	387	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	2863	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGGTTTTGTTTTGAA	7492	False	NA	NA	False	NA	NA	NA	41827819	41792846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
85913	chr15	-	2304	2	Antisense	novelGene_ENSMUSG00000022463.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11066	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCCACGGAAGGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	82056005	82031454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_82031690_82053936
85914	chr15	-	1389	9	NNC	ENSMUSG00000022474.16	novel	1300	8	NA	NA	-1402	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	368.054662210656	7226	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	81846533	81835308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915_81845051_81846363
85915	chr13	-	2272	10	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1167.55775493597	2226	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGCCCTTTTGACTGT	NA	False	NA	NA	False	NA	NA	NA	100923007	100915238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100916012_100916076_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
85916	chr8	+	1357	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	-98	207	-41	0	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	288	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	NA	False	NA	NA	NA	86026219	86034700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
85917	chrM	+	2059	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-1112	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-7	True	NA	-53	True	NA	NA	NA	13032	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85918	chrX	-	3690	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	-8	-3	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_11	320.693669647634	2678	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256476	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256285
85919	chr5	+	943	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	274	-12	1	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	64	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
85920	chr9	+	3186	5	Antisense	novelGene_ENSMUSG00000100602.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	14.9059551857638	213	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGAAAATTTTCTTTATT	NA	False	NA	NA	False	NA	NA	NA	88948982	88960487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_88949021_88949384_88949440_88949528_88949604_88957243_88957340_88957565
85921	chr16	+	4635	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-258	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1361.98577452189	8025	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	84570752	84622816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
85922	chrM	-	2383	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1191	-673	-1191	673	mono-exon	FALSE	NA	NA	NA	NA	NA	8031	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGAGGCTTCCGATTACTA	927	False	NA	87	True	NA	NA	NA	15261	12878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12900_15300
85923	chr7	+	3073	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	19	-1	10	1	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	2741	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2639	False	NA	-98	True	NA	NA	NA	13012770	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
85924	chr7	+	970	6	NNC	ENSMUSG00000030649.19	novel	2797	5	NA	NA	-31	-3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	208.612559545201	155	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCCCAATGTCTATTCC	8241	False	NA	NA	False	NA	NA	NA	101546038	101548742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101546254_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
85925	chr1	-	2050	6	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	25	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	943.443183238927	4766	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCTCACGAGCTTTGGT	2363	False	NA	NA	False	NA	NA	NA	93729603	93720306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93727260_93728176_93728633_93729419
85926	chrM	+	6035	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6802	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
85927	chr6	-	2023	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	49	13	-4	-13	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	62	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTCTGAAATGCTCTT	NA	False	NA	NA	False	NA	NA	NA	83294539	83282685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
85928	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1766	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
85929	chr11	+	1152	2	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-2	at_least_one_novel_splicesite	FALSE	canonical	3	159	junction_1	0	3	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442977
85930	chrX	+	3890	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	65	736	65	-736	multi-exon	FALSE	canonical	3	535	junction_3	101.202320735358	14597	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGTTTTAAAGGAGCCTA	NA	False	NA	NA	False	NA	NA	NA	150799488	150844954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
85931	chr7	-	390	4	NNC	ENSMUSG00000036751.8	novel	618	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2659.70491262137	22	3	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACATTGTGTGTATTACAC	NA	False	NA	NA	False	NA	NA	NA	30325539	30316398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30316588_30322839_30322863_30323924_30324039_30325475
85932	chr11	+	2079	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	-582	2	-582	-2	multi-exon	FALSE	canonical	3	35417	junction_1	0	116	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62441414	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
85933	chr11	+	2658	14	Antisense	novelGene_ENSMUSG00002076300.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACCTGGCAGACACAGTT	NA	False	NA	NA	False	NA	NA	NA	75191107	75231148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_75192229_75193492_75193581_75196933_75197041_75197939_75198120_75200959_75201096_75203128_75203274_75203517_75203659_75203803_75203995_75204124_75204195_75205637_75205739_75206927_75207062_75209235_75209357_75219497_75219587_75231114
85934	chr11	+	1856	3	ISM	ENSMUSG00000070388.4	ENSMUST00000108504.2	1708	4	2477	-416	2477	416	3prime_fragment	FALSE	canonical	1	1	junction_1	0	762	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATTTAAAAAAAGAAATG	168	False	NA	NA	False	NA	NA	NA	72207746	72210658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72208676_72209167_72209345_72209908
85935	chrM	+	5954	3	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	311	84	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_12455_12535_13951_14147
85936	chr6	+	3862	6	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	-9501	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2163.77878721463	118	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122674946	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122676037_122683472_122684278_122684770_122684893_122688496_122688763_122689587_122689675_122690100
85937	chr5	+	2483	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	51	-929	2	929	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	503	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAGTGGGGTCTGCAGCC	4597	False	NA	NA	False	NA	NA	NA	29940988	29973030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
85938	chr17	+	8005	24	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-17552	40924	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2684.15161463714	152	77	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACGTGGGTAGGCGTCC	6539	False	NA	NA	False	NA	NA	NA	6679958	6744619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680147_6680402_6680586_6691899_6692102_6697573_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6708880_6709603_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836_6716919_6719271_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6744415
85939	SIRV5	+	4565	17	NNC	SIRV5A	novel	1890	17	NA	NA	0	0	intron_retention	TRUE	non_canonical	0	0	junction_1	3726.517725622	88	24	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1008	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1124_2024_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7186_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
85940	chr8	+	3398	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-11	-2095	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	978.688001398624	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111760499	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760541_111761980_111762045_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
85941	chr6	+	5322	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	-30	2265	-30	-2265	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	2314	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTTATGTACTGACCC	NA	False	NA	NA	False	NA	NA	NA	66512343	66521939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
85942	chr13	-	3031	16	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	2747.37364202412	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTTTTGTGTGTGTGTGT	4778	False	NA	NA	False	NA	NA	NA	58550303	58538954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877_58550088_58550206
85943	chr17	+	2418	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	1	628	multi-exon	FALSE	non_canonical	0	0	junction_1	0	760	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40158800_40158857
85944	chr4	-	2810	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	-54	12	-54	-12	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	2445	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122779903	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
85945	chr14	+	989	9	FSM	ENSMUSG00000053453.10	ENSMUST00000225401.2	951	9	-41	3	4	-3	multi-exon	FALSE	canonical	3	34	junction_2	279.504472236134	123	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATCTTTGTGCTCATTC	NA	False	NA	NA	False	NA	NA	NA	8508506	8520746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_8508579_8512131_8512210_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
85946	chr6	+	892	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	51	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256204	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148257100
85947	chr7	-	4889	23	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	1203	intron_retention	FALSE	non_canonical	0	0	junction_1	1307.46120148494	1373	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGTTTTTTCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	110682213	110669935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671573_110671675_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
85948	chr5	+	2504	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	71	-530	1	530	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	881	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCGAATTTCACTGG	NA	False	NA	NA	False	NA	NA	NA	108048438	108057401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
85949	chr6	-	2100	8	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-29	-41	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_7	623.446346479611	110	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTCTGTCCCTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	124942199	124935416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942114
85950	chr6	-	1343	3	FSM	ENSMUSG00000048668.17	ENSMUST00000057421.15	1584	3	212	29	39	-24	multi-exon	FALSE	canonical	3	41	junction_2	149.5	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGAGAACCCAGCCGT	686	False	NA	NA	False	NA	NA	NA	128339619	128334351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128335157_128336068_128336318_128339330
85951	chr6	-	1995	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.24264068711928	89	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGATGGCGAGGGAAGG	7479	False	NA	NA	False	NA	NA	NA	122691585	122684738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688759_122689580_122689666_122690091
85952	chr16	+	796	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	11	-2	11	2	multi-exon	FALSE	canonical	3	487	junction_1	5	4118	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATTGCTCTCTGGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	9988102	9992777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_9988189_9988278_9988356_9992144
85953	chr2	+	2478	5	NNC	ENSMUSG00000037938.5	novel	1325	4	NA	NA	-123	4273	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	293.44548045591	2977	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGCCGATCACTAGGGTT	3702	False	NA	NA	False	NA	NA	NA	128971496	128980327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194_128976192_128979434
85954	chr8	-	2754	6	NNC	ENSMUSG00000051176.7	novel	1772	4	NA	NA	-54	849	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2061.03284787021	85	87	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGTCATTTTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	43760071	43747250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43747865_43748052_43749574_43753664_43753743_43757512_43757597_43758716_43758980_43759877
85955	chr14	+	4424	12	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	-54	1346	intron_retention	FALSE	non_canonical	0	0	junction_10	623.722761044222	3246	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATAAAATTGGCCCACAT	8960	False	NA	NA	False	NA	NA	NA	55777791	55790045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55788504_55788700_55788715_55789995
85956	chr7	+	3315	13	ISM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	-115	46	-115	-46	intron_retention	FALSE	canonical	3	1087	junction_9	68.3940279231714	6	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAGCCTGGATTTTGCCC	NA	False	NA	NA	False	NA	NA	NA	120234283	120258701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739
85957	chr6	-	2128	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	-145	142	-145	-142	multi-exon	FALSE	canonical	3	704	junction_1	0	3346	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCACTCCGTAGACCAGG	9835	False	NA	NA	False	NA	NA	NA	122587191	122582503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122584095_122586654
85958	chrM	+	1546	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	-704	-161	704	mono-exon	FALSE	NA	NA	NA	NA	NA	65	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGCAGCATGATACTG	-11	True	NA	NA	False	NA	NA	NA	7765	9311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9300
85959	chr15	-	3274	5	NNC	ENSMUSG00000022205.16	novel	3372	5	NA	NA	-48339	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3502.78653360435	47	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTGTGTTATCCCATGT	NA	False	NA	NA	False	NA	NA	NA	12045408	11981421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993926_12045379
85960	chr11	+	1146	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	351	2	-154	-2	multi-exon	FALSE	canonical	3	35417	junction_1	0	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442347	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
85961	chr17	+	6464	7	Intergenic	novelGene_60	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	10.807661891249	1515	75	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTATATGTGCATATATG	NA	False	NA	NA	False	NA	NA	NA	17724924	17734522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17725384_17726417_17727080_17727123_17728123_17728299_17728520_17728593_17729519_17730717_17730807_17731412
85962	chr2	+	1688	6	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-2	60287	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	104.414558371905	616	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTTCAGGCCAGACGAGT	NA	False	NA	NA	False	NA	NA	NA	104389526	104462061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389830_104390068_104390321_104390422_104390660_104398205_104398836_104398995_104399074_104461873
85963	chr2	+	2913	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	-47	-1706	-47	1706	multi-exon	TRUE	canonical	3	201	junction_1	270.955139275859	2081	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGCTCTCGAGCCCTTTA	3289	False	NA	NA	False	NA	NA	NA	180828992	180832270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
85964	chr2	-	2196	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	60	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4169.46393510879	26	67	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCATGATCCCCAATGTTG	3845	False	NA	NA	False	NA	NA	NA	154734642	154713400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714082_154714143_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
85965	chrX	-	5740	37	NNC	ENSMUSG00000015668.14	novel	813	8	NA	NA	-100703	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	195.381606663018	126	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACTACTGCTTGAATAT	NA	False	NA	NA	False	NA	NA	NA	99770877	99666493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491_99669680_99669772_99670192_99670306_99670423_99677442_99677634_99679287_99679381_99681887_99682055_99682280_99682377_99708340_99708449_99709269_99709453_99713512_99713577_99720892_99721023_99723448_99723511_99723614_99723719_99732661_99732721_99734119_99734304_99738474_99738581_99739603_99739747_99741034_99741147_99747646_99747730_99748393_99748508_99755395_99755554_99755667_99755767_99757481_99757612_99759184_99759362_99759878_99759983_99760934_99761013_99761540_99761640_99762097_99762276_99768246_99768362_99769730_99769855_99770062
85966	chr8	+	3465	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2098	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	772.336353007465	11	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760533	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760652_111760838_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
85967	chr17	-	1750	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	724	1749	mono-exon	FALSE	NA	NA	NA	NA	NA	4	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGAGCGCGAGCGAAGCC	NA	False	NA	NA	False	NA	NA	NA	40158994	40157244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157200_40159000
85968	chr2	+	5042	5	Fusion	ENSMUSG00000078906.10_ENSMUSG00000080888.4	novel	919	4	NA	NA	-5507	1472	intron_retention	FALSE	non_canonical	0	0	junction_1	312.164219602439	8	64	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATAAGACTTGCCTTG	NA	False	NA	NA	False	NA	NA	NA	174846526	174933183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174846640_174854703_174854899_174855220_174855276_174858430_174858558_174928631
85969	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	27	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
85970	chr17	+	5203	23	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-17106	40846	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2733.21046089644	808	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGACTGCGCGGTCACGTGC	6985	False	NA	NA	False	NA	NA	NA	6680404	6744541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680586_6691899_6692102_6697573_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6706242_6709601_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716178_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6744415
85971	chr1	+	497	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	-43	-40	-43	40	mono-exon	FALSE	NA	NA	NA	NA	NA	500	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127966262	127966759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127966300_127966800
85972	chrM	-	1003	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACGCAATTTCCTGGCTC	9986	False	NA	-1	True	NA	NA	NA	3710	2707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
85973	chr9	+	1883	7	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-40	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	562.32780080266	15	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAATTTCCTGTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	108183597	108215128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846_108214577_108214615
85974	chr7	-	721	6	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	93	1416	5	398	5prime_fragment	FALSE	canonical	3	13120	junction_5	588.142703771797	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCAGCCATGCCCCAGCCA	8428	False	NA	NA	False	NA	NA	NA	99132852	99128518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
85975	chr18	+	605	1	FSM	ENSMUSG00000058064.7	ENSMUST00000079733.7	534	1	-21	-50	-21	50	mono-exon	FALSE	NA	NA	NA	NA	NA	4157	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAGGAAAAATGCTATCCA	NA	False	NA	NA	False	NA	NA	NA	15965829	15966434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_15965800_15966400
85976	chr10	+	1635	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	5	144	5	-144	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	6763	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTCTGCTGTGTTCCTGG	9221	False	NA	NA	False	NA	NA	NA	127102260	127117675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
85977	chr6	-	3396	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2991.63845854854	9269	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713594_122714230_122714258_122716791_122716953_122717346_122717440_122719334
85978	chr12	-	5513	4	Genic_Genomic	ENSMUSG00000113411.2	novel	370	1	NA	NA	-9881	2952	multi-exon	FALSE	canonical	0	0	junction_3	1.69967317119759	68	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGACCATCTAGAAACTGC	NA	False	NA	NA	False	NA	NA	NA	19925377	19912174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_19917357_19918884_19918946_19919142_19919270_19925234
85979	chr11	+	1855	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	-84	0	-84	0	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	2702	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	NA	False	NA	NA	NA	69471100	69482698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
85980	chr13	-	1979	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1986.9610217719	393	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	4751	False	NA	NA	False	NA	NA	NA	58550330	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
85981	chrX	+	2386	17	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	-142	87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	151.271641013774	1068	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTTGTAATGT	NA	False	NA	NA	False	NA	NA	NA	56454371	56534214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478571_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
85982	chrX	+	2163	17	NNC	ENSMUSG00000079584.3	novel	2156	17	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	151.271641013774	1878	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCTGTCTGGCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	56454513	56534133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468741_56478571_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
85983	chr17	+	4761	10	NNC	ENSMUSG00000034165.17	novel	336	3	NA	NA	-52	11523	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1728.02346949083	2504	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCTAAAAAGCCGATACTGC	NA	False	NA	NA	False	NA	NA	NA	47908036	47922139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47908202_47908344_47908505_47908927_47909065_47909533_47912836_47913327_47913419_47913561_47913723_47914779_47914913_47915177_47915318_47917762_47917926_47921830
85984	chr8	-	4251	10	Fusion	ENSMUSG00000053226.8_ENSMUSG00000003813.16	novel	2074	9	NA	NA	-46	1747	multi-exon	FALSE	non_canonical	0	0	junction_1	428.66669546685	21	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGCGGGGCTGGCTACGG	NA	False	NA	NA	False	NA	NA	NA	85567340	85558900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_85559575_85559847_85562304_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
85985	chr2	-	3667	18	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-863	1854	intron_retention	FALSE	non_canonical	0	0	junction_1	121.819027382942	341	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGGGGTCAAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	164700494	164679583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164680172_164680357_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503_164699751_164700423
85986	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	10562	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
85987	chr6	-	756	1	FSM	ENSMUSG00000084319.4	ENSMUST00000121046.2	519	1	-38	-199	-38	199	mono-exon	FALSE	NA	NA	NA	NA	NA	63	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAATTTCAGAATCA	NA	False	NA	NA	False	NA	NA	NA	99855333	99854577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_99854600_99855300
85988	chr17	-	2488	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	3213	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149123	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145578_36145663_36146932_36147054_36147166_36147519_36147629_36148888
85989	chr17	+	5090	23	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-17105	40836	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2733.21046089644	1785	62	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAGAGCGCGACTGCGC	6986	False	NA	NA	False	NA	NA	NA	6680405	6744531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680586_6691899_6692102_6697573_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6706242_6709601_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836_6716919_6719271_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6744415
85990	chr9	-	2283	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	33	4	2	-4	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	4	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATACTTGGGTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	100916918	100864088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
85991	chr8	+	1060	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	58	1510	-9	1280	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	34	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATTGTGTTTGTATTA	NA	False	NA	NA	False	NA	NA	NA	57964998	57967523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
85992	chr11	-	2886	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	-28	0	-28	0	multi-exon	FALSE	canonical	3	983	junction_2	78.1211180853749	2619	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	NA	False	NA	NA	NA	60702119	60678929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
85993	chr15	+	1754	11	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5791.25851952751	136	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	NA	False	NA	NA	NA	103148879	103155119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103149999_103150675_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682_103153450_103154772_103154849_103154971
85994	chr7	+	2213	8	Antisense	novelGene_ENSMUSG00000051007.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3483	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCGGATATTTGTGCG	NA	False	NA	NA	False	NA	NA	NA	140987327	140993986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_140988877_140989000_140989114_140989243_140989338_140989758_140989854_140990690_140990797_140990896_140991003_140991709_140991785_140993911
85995	chr19	+	1811	11	FSM	ENSMUSG00000090840.3_ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	-6	-601	6	0	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	3631	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGCCTAGGCTTCCAGC	969	False	NA	NA	False	NA	NA	NA	8713196	8718589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
85996	chr17	+	2377	5	NNC	ENSMUSG00000024038.18	novel	1582	4	NA	NA	-13	143797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1591.0965361976	830	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGAAACTTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	31739110	31894102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_31739236_31740542_31740667_31746283_31748222_31853559_31853695_31894047
85997	chrX	-	3586	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	58	3	0	-3	multi-exon	FALSE	canonical	3	1008	junction_2	64.9970120101527	4261	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256257	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
85998	chr14	-	2439	14	NIC	ENSMUSG00000040472.16	novel	2547	16	NA	NA	359	13	intron_retention	FALSE	canonical	3	306	junction_11	83.7277215798134	142	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959274	55953320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051
85999	chr17	-	2424	2	NNC	ENSMUSG00000118642.2	novel	714	4	NA	NA	-2	1749	intron_retention	FALSE	non_canonical	0	0	junction_1	0	341	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGAGCGCGAGCGAAGCC	NA	False	NA	NA	False	NA	NA	NA	40159720	40157244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_40158809_40158860
86000	chr11	+	1138	5	NNC	ENSMUSG00000018882.13	novel	2431	8	NA	NA	8976	-813	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1236.47874526819	12	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGTGTGTTCTGTACA	NA	False	NA	NA	False	NA	NA	NA	97215709	97219933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97215860_97216545_97216584_97217607_97217758_97218911_97219086_97219307
86001	chr2	-	3759	16	FSM	ENSMUSG00000017754.14	ENSMUST00000059954.14	1809	16	-309	-1641	-309	1641	multi-exon	FALSE	canonical	3	278	junction_15	32.6696597268271	349	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTTTAGGGACCGGCAG	NA	False	NA	NA	False	NA	NA	NA	164699940	164679796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
86002	chr7	+	2285	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	1	-294	1	294	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	2248	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATCACATCTGTAGAACA	NA	False	NA	NA	False	NA	NA	NA	63835129	63861469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
86003	SIRV3	-	3023	8	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	intron_retention	FALSE	non_canonical	0	0	junction_1	637.030483363782	1271	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2005_4567_4784_6061_6909_6988_7989_8127_8208_8755_8976_9189_9299_9434
86004	chr5	+	2202	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	111	26	4	-26	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	3404	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAGAGTGAAGTTAAAA	9089	False	NA	NA	False	NA	NA	NA	124045348	124066872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
86005	chr2	+	2463	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	122	1087	-3	-71	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	268	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTAATTTTTGTGAAAAG	NA	False	NA	NA	False	NA	NA	NA	34662103	34666472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
86006	chr6	-	3706	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	9	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3001.09703810103	13	111	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8922	False	NA	NA	False	NA	NA	NA	122719472	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709829_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86007	chr9	-	3833	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	-245	2279	-245	803	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	2380	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTAGGTGTACTTGTATA	NA	False	NA	NA	False	NA	NA	NA	36679220	36642918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
86008	chr4	-	1158	7	Antisense	novelGene_ENSMUSG00000073775.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTTTTTCCTA	4674	False	NA	NA	False	NA	NA	NA	108719173	108691847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108692053_108703146_108703205_108710361_108710417_108713342_108713417_108715119_108715191_108716470_108716554_108718561
86009	chr12	-	8053	39	NNC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	-229209	1940	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.226781729866	2383	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAATGAATTAATAAAGA	NA	False	NA	NA	False	NA	NA	NA	86100533	85860281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_85861058_85861383_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244_85871859_85873224_85873399_85878668_85878774_85890549_85890635_85892020_85892125_85896021_85896156_85904153_85904235_85910335_85910407_85911297_85911380_85923261_85923365_85925158_85925250_85926138_85926249_85935931_85936012_85937789_85937855_85938887_85938983_85945764_85945879_85946162_85946258_85955565_85955627_85959322_85959364_85964447_85964605_85965702_85966010_85969729_85969851_85972411_85972559_85973573_85973678_85976635_85976765_85979497_85979583_85980055_85980446_85986096_85986283_86003337_86003491_86042770_86042969_86059419_86059637_86067294_86067375_86070990_86071115_86099914
86010	chr11	-	1220	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	121	2	-75	-2	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	68	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCCAACTCAGTTGTT	6392	False	NA	NA	False	NA	NA	NA	69812091	69807547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
86011	chr7	+	3152	28	FSM	ENSMUSG00000056394.21	ENSMUST00000165964.10	3166	28	15	-1	15	1	multi-exon	FALSE	canonical	3	577	junction_1	177.886980349259	23	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	3074	False	NA	NA	False	NA	NA	NA	13013205	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_13013400_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
86012	chr4	-	1767	3	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	490	64	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224603	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220565_127224294_127224360_127224438
86013	chr4	+	5172	4	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1817	2587	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	39.2626483512709	3768	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATCAACAAATGTAAACG	2765	False	NA	NA	False	NA	NA	NA	147233133	147267623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147233279_147260303_147260362_147261203_147261331_147262781
86014	chr15	-	776	1	Intergenic	novelGene_3342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	613	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGCTCACTTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	86097638	86096862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_86096900_86097600
86015	chr14	+	5540	6	Antisense	novelGene_ENSMUSG00002075543.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	714	54	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAAGTTTCTGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	41877314	42541935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_41877512_42026725_42026920_42217092_42217289_42359108_42359305_42537061_42537407_42537523
86016	chr19	+	1853	12	NNC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	0	823	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	302.893129558734	509	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAATTTTATACGTAGCAG	NA	False	NA	NA	False	NA	NA	NA	36061115	36083000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735_36082490_36082619
86017	chr3	+	3433	18	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	72	2654	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	581.800058403639	544	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCACCGCGAGAGGGC	NA	False	NA	NA	False	NA	NA	NA	90383535	90398340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765_90395137_90395230_90396903_90397462_90397580_90397854_90397902_90398138
86018	chr17	-	3734	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	17	1212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.8895179622	16	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCTTGTGTCAGGATGA	4843	False	NA	NA	False	NA	NA	NA	25179593	25160231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25160645_25160724_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
86019	chr3	+	1195	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	-5	-1	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	1233	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAACAGAAGTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	87826858	87830968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
86020	chr4	+	1800	6	FSM	ENSMUSG00000028691.13	ENSMUST00000106470.8	877	6	-196	-727	92	727	multi-exon	FALSE	canonical	0	0	junction_1	9266.17147693696	55	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGCTTCATGCCTAGCT	NA	False	NA	NA	False	NA	NA	NA	116542887	116557196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116543334_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
86021	chr15	+	3290	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-4015	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	228.172922699126	2250	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGTTAATGTTGCAGTT	NA	False	NA	NA	False	NA	NA	NA	101990443	102005605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687_102004757_102005093
86022	chr4	-	10489	2	Intergenic	novelGene_2106	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	346	236	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTACTAAGCAGAGAGAGAC	NA	False	NA	NA	False	NA	NA	NA	146526627	146506370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146514647_146524414
86023	chr5	-	1720	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-62153	-2	intron_retention	FALSE	non_canonical	0	0	junction_5	1654.6796668842	344	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	142954662	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891327_142954636
86024	chr6	-	2203	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-12	-2	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	2188	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTATGTATGCCAGGAG	NA	False	NA	NA	False	NA	NA	NA	124942513	124935377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
86025	chr12	-	1943	9	FSM	ENSMUSG00000021114.10	ENSMUST00000021536.9	3667	9	76	1648	-67	629	multi-exon	FALSE	canonical	3	904	junction_8	86.5761947650739	1591	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTCCAAAAATATGTGTT	45	False	NA	NA	False	NA	NA	NA	78908336	78889146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_78890385_78891999_78892079_78894540_78894608_78895169_78895274_78896513_78896559_78897245_78897314_78899038_78899119_78904000_78904119_78908192
86026	chr6	-	3633	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2858.84094695735	8609	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708432_122708515_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86028	chr17	-	745	6	NNC	ENSMUSG00000014769.11	novel	1970	5	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1973.1696936655	4	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	NA	False	NA	NA	NA	15718556	15696220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15696370_15697549_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
86029	chr11	+	1223	6	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCGCTGCTGCACACGG	6763	False	NA	NA	False	NA	NA	NA	69807547	69812094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69808161_69808246_69808331_69808425_69808555_69808742_69808850_69809978_69810163_69811988
86030	chr3	-	3297	19	NNC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	-736	6162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	387.794654997261	1321	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAGAGTCACATGATGACT	NA	False	NA	NA	False	NA	NA	NA	89135131	89110225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89110392_89110776_89110848_89111290_89111481_89111578_89111728_89112752_89112882_89113092_89113272_89113440_89113675_89114532_89114758_89115129_89115289_89115612_89115735_89115822_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119_89121213_89135115
86031	chr16	+	5083	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-258	448	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1361.98577452189	8239	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATACTATGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	84570752	84623264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
86032	chrX	-	1568	7	FSM	ENSMUSG00000031388.15	ENSMUST00000096316.4	892	7	-78	-598	0	-1	multi-exon	FALSE	canonical	3	1031	junction_1	37.306910292271	57	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAGTGGGGTATGCTTTT	NA	False	NA	NA	False	NA	NA	NA	72965512	72960481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
86033	chr2	+	2103	6	Fusion	ENSMUSG00000078896.12_ENSMUSG00000078898.10_ENSMUSG00000094475.8	novel	1272	3	NA	NA	-367925	-719	multi-exon	TRUE	non_canonical	0	0	junction_1	0	336	27	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACATAAACGAACACATACA	NA	False	NA	NA	False	NA	NA	NA	174846303	175444934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174846504_174919684_174919909_175222239_175222367_175320124_175320351_175443356_175444656_175444907
86034	chr17	-	2197	16	NNC	ENSMUSG00000024039.16	novel	757	9	NA	NA	-15	-2167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	78.1228661930822	14	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACAGCTTGTGAGCCACAG	1930	False	NA	NA	False	NA	NA	NA	31856154	31833788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_31833990_31834216_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
86035	chr4	-	1247	7	NNC	ENSMUSG00000029048.4	novel	1596	7	NA	NA	3143	-278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	595.421419388543	6	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTGTTTGAGACTATT	NA	False	NA	NA	False	NA	NA	NA	155167685	155158844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167587
86036	chr6	+	3164	9	NIC	ENSMUSG00000030062.8	novel	3633	10	NA	NA	33	569	intron_retention	FALSE	canonical	3	2268	junction_5	115.163742123986	8	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATTTGCTTTTGCTGTA	651	False	NA	NA	False	NA	NA	NA	88061577	88080938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88079203_88080346
86037	chr7	-	1066	7	NNC	ENSMUSG00000078630.9	novel	2796	4	NA	NA	4266	1478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGGGGGAAAAAAAAAAAGG	2065	False	NA	NA	False	NA	NA	NA	101548726	101546098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101546252_101546393_101546566_101546937_101547020_101547143_101547277_101547758_101547818_101548103_101548243_101548398
86039	chr6	-	3025	7	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3543.09113706599	211	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712439_122717342_122717440_122719334
86040	chr9	-	4170	18	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	4	1159	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	434.485512876614	2407	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGCAACAATAAAATTTC	NA	False	NA	NA	False	NA	NA	NA	36678642	36642562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678286
86041	chr8	-	4150	14	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	28	-20	intron_retention	FALSE	canonical	0	0	junction_12	905.396503418456	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	26337694	26306043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330035_26330104_26337606
86042	chr15	+	3296	16	NNC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	15	-2009	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	224.996553060017	18	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTTCCTCAAGAAGACAGA	2258	False	NA	NA	False	NA	NA	NA	82031466	82086011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031569_82056960_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82085183
86043	chr11	+	1548	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	14	-31	multi-exon	FALSE	canonical	3	1960	junction_1	0	29	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGTCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653633	120655214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653849
86044	chrM	+	2046	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-1099	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2410	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	6	True	NA	-40	True	NA	NA	NA	13045	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
86045	chr5	+	1374	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	47	3574	-20	-97	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCTCTTCTGTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	134611590	134627085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
86046	chr17	+	1885	5	NNC	ENSMUSG00000034165.17	novel	1977	5	NA	NA	-22	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1734.95639354423	1590	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGGGCTGGTGGCCCAT	NA	False	NA	NA	False	NA	NA	NA	47904431	47910557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47904780_47905658_47905875_47908344_47908505_47908927_47909065_47909533
86047	chr1	+	1288	3	Antisense	novelGene_ENSMUSG00000038633.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCGTGTAGACCCATTC	NA	False	NA	NA	False	NA	NA	NA	182103534	182110218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182104457_182106538_182106866_182110179
86048	chr18	+	3044	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	158.489013770111	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATCAGTGGGTTCT	8992	False	NA	NA	False	NA	NA	NA	32970305	32999445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32999084_32999264
86049	chr9	+	848	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	39	1226	39	-86	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	1012	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGACGATGAGGGCGAAGAG	NA	False	NA	NA	False	NA	NA	NA	62248649	62284868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
86050	chr18	+	3249	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	12	1194	12	0	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	293	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	8976	False	NA	NA	False	NA	NA	NA	32970289	32999453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
86051	chr17	+	1850	4	ISM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	1004	4	161	2	3prime_fragment	FALSE	canonical	3	3602	junction_1	261.865529529099	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTGGCTCTTGTGATC	NA	False	NA	NA	False	NA	NA	NA	47905398	47910610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_47905875_47908344_47908505_47908927_47909065_47909533
86052	chr6	-	3663	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	2782	129	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122705947_122706000_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86053	chr2	-	954	7	FSM	ENSMUSG00000051730.16	ENSMUST00000060447.13	968	7	14	0	3	0	multi-exon	FALSE	canonical	3	432	junction_3	75.5058864519111	2354	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	6820	False	NA	NA	False	NA	NA	NA	69715945	69701541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711293_69711640_69711756_69715592
86054	chrM	-	2796	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	1256	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10371	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAAATGAATCCGATGTC	900	False	NA	60	True	NA	NA	NA	15288	12295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
86055	SIRV3	-	1602	8	Fusion	SIRV3C_SIRV3D	novel	796	3	NA	NA	0	13	multi-exon	FALSE	non_canonical	0	0	junction_1	637.030483363782	155	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGACTTTTACTATCTAATC	NA	False	NA	NA	False	NA	NA	NA	9943	4588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_4779_6057_6334_7270_7370_7872_7989_8124_8208_8755_8976_9189_9299_9434
86056	chr9	+	970	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	98	870	-2	-60	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGCAGGTGCCTGAGCAAA	NA	False	NA	NA	False	NA	NA	NA	119956852	119960565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
86057	chr19	-	816	5	FSM	ENSMUSG00000024944.7	ENSMUST00000025893.7	1286	5	467	3	59	0	multi-exon	FALSE	canonical	3	648	junction_1	48.4890451545501	14499	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGGCTGAGCCATTTG	NA	False	NA	NA	False	NA	NA	NA	6191111	6184415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
86058	chr10	+	2919	14	NIC	ENSMUSG00000006498.17	novel	848	7	NA	NA	25	3	intron_retention	FALSE	canonical	0	0	junction_1	460.523872004905	2894	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	2019	False	NA	NA	False	NA	NA	NA	79690896	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690998_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
86059	chr5	-	3434	3	FSM	ENSMUSG00000025337.11	ENSMUST00000125625.2	915	3	-1339	-1180	-19	-299	multi-exon	FALSE	canonical	3	837	junction_2	31.5	7	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATAGTGTCACTCCCCG	NA	False	NA	NA	False	NA	NA	NA	130284265	130275544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_130277292_130279654_130279856_130282779
86060	chr11	-	649	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	363	0	-113	0	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	NA	False	NA	NA	False	NA	NA	NA	93846722	93840639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
86061	chrM	-	1972	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	432	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11914	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAATGCTAGGCGTTTGATT	900	False	NA	60	True	NA	NA	NA	15288	13119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
86062	chr6	-	1389	10	NNC	ENSMUSG00000030298.11	novel	1353	9	NA	NA	37	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	435.872673672394	86	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTACTGTCATCCCACACA	2230	False	NA	NA	False	NA	NA	NA	113717651	113705027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113713993_113714088_113714914_113714960_113717605
86063	chrM	-	2824	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	1284	multi-exon	FALSE	non_canonical	0	0	junction_1	0	117	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTATAGAGGATTGCTTGT	900	False	NA	60	True	NA	NA	NA	15288	12267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13953_14149
86064	chrM	+	1498	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-713	-1	-713	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	117	False	NA	NA	False	NA	NA	NA	7893	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7900_9400
86066	chr11	+	6480	31	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-151	4976	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	1001.18767748887	39	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCATCTGTCCCTTGGGTC	NA	False	NA	NA	False	NA	NA	NA	72332029	72347570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702_72343944_72344380_72344426_72344878_72345046_72345125_72345225_72347128_72347195_72347325
86067	chr11	-	2045	8	FSM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	-16	-591	-6	94	multi-exon	FALSE	canonical	3	649	junction_5	59.12318513416	1826	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTTGTAGCTAATACCTG	NA	False	NA	NA	False	NA	NA	NA	43638825	43620244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
86068	chr18	+	3016	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	-110	3609	-110	1580	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	1948	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAGAACATAAAAACCCAG	NA	False	NA	NA	False	NA	NA	NA	6765034	6790820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
86069	chr11	+	3467	9	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	3	-9	intron_retention	FALSE	non_canonical	0	0	junction_3	499.167040553561	1364	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTCAATGTCCACTCTG	9434	False	NA	NA	False	NA	NA	NA	88861080	88882430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861306_88863446_88865029_88871894_88872194_88872863_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
86070	chr15	-	2807	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	235	-920	-83	-14	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	121	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGATGATGGGAGGCATG	675	False	NA	NA	False	NA	NA	NA	36793846	36771027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
86071	chr6	-	2970	14	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-35139	676	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3099.69925053818	7	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTACTTGGTGCAAGGAT	NA	False	NA	NA	False	NA	NA	NA	7728393	7674492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675227_7675429_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108_7693484_7728126
86072	chr6	-	3904	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	39	16	39	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	34328	104	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	9855	False	NA	NA	False	NA	NA	NA	122719665	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86073	chrM	+	1636	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-280	22	-280	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	26577	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATTACAGGCCTGACAAT	9	False	NA	NA	False	NA	NA	NA	9886	11522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
86074	chr8	-	2905	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	14	0	14	0	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	2936	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCAGCATTCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	86281959	86264261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
86075	chr7	-	372	2	Genic_Genomic	ENSMUSG00000069972.7	novel	453	1	NA	NA	-10	52	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	88180116	88179601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_88179811_88179953
86076	chrM	+	2583	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	746	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11507	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	28	False	NA	-20	True	NA	NA	NA	12487	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13933_14150
86077	chr1	+	1819	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	24	2	0	-2	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	2764	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAGTTTGTTACCTAAT	NA	False	NA	NA	False	NA	NA	NA	143653042	143683202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
86078	chr9	+	3136	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	5	-1598	5	1598	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	2634	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAAAATTTATTTTTGCA	8585	False	NA	NA	False	NA	NA	NA	73020734	73032213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
86079	chr7	-	4231	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	-10	1204	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_22	418.270632861129	3	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAGAGACTTCTGGGGA	NA	False	NA	NA	False	NA	NA	NA	143153803	143109762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143150797_143150876_143153718
86080	chrX	-	983	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-189	-44	189	mono-exon	FALSE	NA	NA	NA	NA	NA	75	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGAGACCATTAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	68649895	68648912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68648900_68649900
86081	chr1	-	1710	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	106	232	106	-232	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	77	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATAAGTAACCCCAATAAA	NA	False	NA	NA	False	NA	NA	NA	182110263	182103568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_182104459_182106540_182107284_182110186
86082	chr3	+	2339	8	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	16	0	intron_retention	FALSE	non_canonical	0	0	junction_7	459.239655544346	2460	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCCTCTTGGAATAA	NA	False	NA	NA	False	NA	NA	NA	122068082	122078920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705_122078809_122078852
86083	chr7	-	689	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	-25	-39	-25	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1270	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ATAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92828877	92828188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92828200_92828900
86084	chrM	+	657	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	30	-3	30	3	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	4	True	NA	NA	False	NA	NA	NA	7042	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7000_7700
86085	chr14	-	2645	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	-22	-992	-22	992	multi-exon	FALSE	canonical	3	896	junction_2	62.1711347813437	1163	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACGAAAAGGCTTGGCTA	NA	False	NA	NA	False	NA	NA	NA	20439000	20433713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
86086	chr9	+	5257	30	NNC	ENSMUSG00000032220.11	novel	4699	29	NA	NA	0	57116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	58.9224686577451	212	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAGCACTGAAAATACAAAAT	NA	False	NA	NA	False	NA	NA	NA	70114631	70364164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873_70223962_70227350_70227441_70229673_70229806_70232114_70232250_70234425_70234559_70242396_70242594_70245010_70245092_70245998_70246086_70248562_70248650_70249263_70249432_70250325_70250412_70253968_70254051_70260541_70260649_70266566_70266666_70269504_70269650_70274897_70275013_70275950_70276121_70277638_70277785_70283785_70283933_70285492_70285651_70286002_70286093_70291085_70291288_70303057_70303228_70306003_70307446_70341736_70341935_70364145
86087	chr6	-	2063	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.24264068711928	407	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGGAAAGATCATAGAAA	7476	False	NA	NA	False	NA	NA	NA	122691588	122684673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688759_122689580_122689666_122690091
86088	chrM	+	3547	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-1723	0	1723	mono-exon	FALSE	NA	NA	NA	NA	NA	26	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	4	True	NA	NA	NA	11741	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_15300
86089	chr11	+	2504	6	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	50524	1623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	138.295914617895	21	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGAGAATTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	62399957	62406866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62400026_62400645_62400678_62402963_62403098_62403729_62404503_62404760_62405717_62406325
86090	chrM	+	968	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	410	0	410	0	mono-exon	FALSE	NA	NA	NA	NA	NA	494	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	479	False	NA	NA	False	NA	NA	NA	10576	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10600_11500
86091	chr17	-	2725	3	FSM	ENSMUSG00000001525.11	ENSMUST00000173253.2	979	3	-62	-1684	-62	0	multi-exon	FALSE	canonical	3	8733	junction_1	24	32	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36148014	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519
86094	chr6	-	375	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	312	3	312	-3	multi-exon	FALSE	canonical	3	26814	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATGGTTGGCGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	72934973	72934338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72934636_72934895
86095	chr5	+	956	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	261	-12	14	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	683	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	121342596	121347043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
86096	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
86097	chr4	-	1506	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	25	92	25	-92	multi-exon	FALSE	canonical	3	984	junction_1	0	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCATGCGTATCCTGTC	NA	False	NA	NA	False	NA	NA	NA	127222929	127219119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127220565_127222868
86098	chr9	+	1763	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	39	56	39	-36	multi-exon	TRUE	canonical	3	1280	junction_13	396.993628196225	2	67	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATATGCCTTGAATTTT	1034	False	NA	NA	False	NA	NA	NA	108437523	108442727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
86099	chr7	+	2801	20	ISM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	4096	-12	4096	12	3prime_fragment	FALSE	canonical	2	12	junction_1	14.2015566233535	1	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTCCAAGCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	30163245	30186660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_30163328_30164890_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
86100	chrM	+	2915	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	435	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	105	False	NA	-4	True	NA	NA	NA	12176	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13951_14147
86101	chr11	+	14493	63	Fusion	ENSMUSG00000014245.9_ENSMUSG00000042298.19	novel	3410	10	NA	NA	368	1615	multi-exon	TRUE	non_canonical	0	0	junction_9	81.6151807026353	387	60	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTATAATGATTTGAGAAT	NA	False	NA	NA	False	NA	NA	NA	62172677	62406858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_62172715_62174422_62174534_62174956_62174996_62175828_62175886_62176649_62176712_62182949_62183045_62199867_62200020_62203841_62204005_62204835_62208855_62210189_62210368_62211820_62212042_62212215_62212274_62216313_62216458_62217933_62218076_62220266_62220481_62220801_62220966_62221621_62221751_62224845_62224985_62225323_62225486_62228368_62228523_62228926_62229074_62229683_62229898_62231236_62231458_62233823_62234177_62235456_62235714_62236059_62236142_62240172_62240322_62242204_62242375_62244061_62244157_62245190_62245299_62245396_62245510_62249675_62249842_62257789_62257984_62260117_62260250_62263901_62264281_62267460_62267587_62269321_62269480_62272232_62272297_62273986_62274206_62275547_62275669_62280516_62280621_62281806_62281858_62283328_62283510_62285963_62286055_62289090_62289263_62292026_62292094_62294624_62294678_62295235_62295292_62301645_62301760_62310423_62310606_62313699_62313893_62324387_62324529_62329166_62329340_62349278_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62399951_62400026_62400645_62400678_62402963_62403098_62403729_62404422_62404760_62405978_62406501
86102	chr4	-	2144	5	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	7	-2	intron_retention	FALSE	canonical	3	295	junction_4	36.065911883661	102	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9142	False	NA	NA	False	NA	NA	NA	155976176	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155973626_155973890_155975127_155975209_155975360_155975508_155975873_155976087
86103	chr5	-	1253	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	59	1526	0	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	62	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6823	False	NA	NA	False	NA	NA	NA	148989791	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
86104	chr7	-	572	7	FSM	ENSMUSG00000074129.15	ENSMUST00000209212.2	514	7	-34	-24	0	0	multi-exon	FALSE	canonical	3	332	junction_3	5972.4797311409	24	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
86105	chr12	+	2589	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	-861	-76	-861	76	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	1715	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGTAGATATTATCAGTG	NA	False	NA	NA	False	NA	NA	NA	28724368	28732250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
86106	chr11	-	1839	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	84	174	84	-174	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	11	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCCACTGAGCTGCCAAC	5285	False	NA	NA	False	NA	NA	NA	88846207	88815019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
86107	chrM	+	822	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-141	0	-141	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	9	True	NA	NA	False	NA	NA	NA	7785	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
86108	chr17	+	3620	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	-34	0	-34	0	multi-exon	FALSE	canonical	3	1413	junction_6	319.856779473251	2508	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	386	False	NA	NA	False	NA	NA	NA	56610286	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
86109	chr17	+	2044	7	FSM	ENSMUSG00000034165.17	ENSMUST00000182848.8	926	7	-56	-1062	-19	0	multi-exon	FALSE	canonical	3	40	junction_1	1799.11524552116	124	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	NA	NA	NA	47816024	47910614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47816192_47889633_47889718_47904578_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
86110	chr17	+	1104	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	42	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	2500	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATAGCTGAATTTTGTTT	3078	False	NA	NA	False	NA	NA	NA	35816956	35821665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821245_35821456
86111	chr4	-	1237	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	-73	-1	3	0	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	2099	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	NA	False	NA	NA	NA	148236589	148230243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
86112	chr4	-	1505	2	Genic_Genomic	ENSMUSG00000081260.2	novel	339	1	NA	NA	-68	198645	multi-exon	FALSE	non_canonical	0	0	junction_1	0	574	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACATCATGAAGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	147033023	146833971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_146835025_147032571
86113	chr17	-	5628	6	Antisense	novelGene_ENSMUSG00000006818.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15760	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGCGTCCGCAAGGACA	NA	False	NA	NA	False	NA	NA	NA	13239015	13226854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_13226953_13227067_13227273_13229405_13229522_13232317_13232498_13233910_13234678_13234753
86114	chr5	-	1227	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	27	1584	-2	-58	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	1134	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCGGCTGTTTTGTTGACA	6791	False	NA	NA	False	NA	NA	NA	148989823	148985095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
86115	chr4	-	1346	6	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	30	-2	intron_retention	FALSE	canonical	3	268	junction_2	47.3049680266249	260	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9165	False	NA	NA	False	NA	NA	NA	155976153	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155973626_155973890_155974181_155974955_155975127_155975209_155975360_155975508_155975873_155976087
86116	chr11	-	1809	9	Antisense	novelGene_ENSMUSG00000020402.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1401	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCAGATCGCGGCGGCGC	3	True	NA	NA	False	NA	NA	NA	52280211	52251888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_52251978_52265123_52265195_52265743_52265794_52267216_52267368_52267471_52267527_52274675_52274905_52276407_52276560_52278241_52278299_52279256
86117	chr7	+	643	3	Genic_Genomic	ENSMUSG00000081491.2	novel	333	1	NA	NA	-62	247213	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	8	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGCAAGCAAGCAAACAAG	NA	False	NA	NA	False	NA	NA	NA	33875074	34122682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_33875503_33991849_33991855_34122472
86118	chr17	+	5160	23	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-17106	40836	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2733.21046089644	56	82	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAGAGCGCGACTGCGC	6985	False	NA	NA	False	NA	NA	NA	6680404	6744531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680586_6691899_6692102_6697573_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6706242_6709601_6709670_6709910_6710001_6710948_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716017_6716180_6716279_6716836_6717040_6719289_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6744415
86119	chr8	-	4889	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	10	3	10	-3	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	9511	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATAATTTGTCTTTCTATT	NA	False	NA	NA	False	NA	NA	NA	127672580	127657419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
86120	chr17	+	1896	5	NNC	ENSMUSG00000034165.17	novel	464	3	NA	NA	-207	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1734.95639354423	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	NA	NA	NA	47905030	47910614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_47905333_47905658_47905875_47908344_47908505_47908927_47909065_47909533
86121	chr8	-	3314	21	Intergenic	novelGene_1750	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTCAGTGCTCCGAGGG	NA	False	NA	NA	False	NA	NA	NA	111782141	111760814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760895_111763539_111763704_111766761_111766951_111767226_111767374_111768108_111768299_111768869_111769016_111769292_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
86122	chr5	+	387	1	Intergenic	novelGene_927	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
86123	chr17	+	2082	7	FSM	ENSMUSG00000034165.17	ENSMUST00000171031.8	2113	7	37	-6	9	0	multi-exon	FALSE	canonical	3	29	junction_2	1830.80687281744	2255	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	NA	NA	NA	47816012	47910614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47816192_47889633_47889699_47904533_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
86124	chrM	+	1771	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-824	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	151	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	-30	True	NA	NA	NA	13320	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13943_14139
86125	chr12	+	4068	23	NNC	ENSMUSG00000112449.2	novel	3646	16	NA	NA	-109431	-823	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	421.168173257773	1955	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCATTGGTTGGTTCAT	NA	False	NA	NA	False	NA	NA	NA	55092457	55235535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55092731_55095673_55095763_55100085_55100189_55104022_55104137_55106240_55106363_55107838_55107979_55109772_55109894_55201605_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
86126	chr13	-	2573	4	NNC	ENSMUSG00000113450.2	novel	2492	4	NA	NA	-5	362	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.539514973407	6	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CACACACAAAAAAAATAATA	9533	False	NA	NA	False	NA	NA	NA	62614625	62600467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62601017_62601215_62603008_62604746_62604874_62614520
86127	chr15	-	3765	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	-238	-483	-238	483	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	2162	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACGATTCCTTACCCCAA	NA	False	NA	NA	False	NA	NA	NA	38301188	38294173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
86128	chr4	+	848	4	NIC	ENSMUSG00000065990.13	novel	1159	4	NA	NA	5	-9	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	1100.13494121807	170	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACTCAATTATTCTAGGC	NA	False	NA	NA	False	NA	NA	NA	155916130	155917509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155916193_155916349_155916528_155916808_155917255_155917347
86129	chr6	-	2421	11	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-44097	-40	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_10	845.289985744537	25	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTCCCTTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	124986598	124935415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124943600_124943719_124958964_124959062_124961280_124961400_124986527
86130	chr11	+	5983	3	Intergenic	novelGene_2290	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	975	2	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTAGCCTGAGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	57433741	57451297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57434154_57445632_57450386_57450479
86131	chr16	-	4195	17	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	26	1555	at_least_one_novel_splicesite	TRUE	non_canonical	3	128	junction_1	350.692479023645	2182	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTCTAAATTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	15455238	15440205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15440367_15441289_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
86132	chr15	+	1643	10	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	0	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4250.75671985095	12	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAAACGATTTAATTCTC	NA	False	NA	NA	False	NA	NA	NA	103148880	103153359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149577_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
86133	chr9	+	829	2	Genic_Genomic	ENSMUSG00000049932.4	novel	1384	1	NA	NA	7	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	108	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGGTTTAATGTTGAATG	5260	False	NA	NA	False	NA	NA	NA	44245997	44247372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_44246057_44246602
86134	chr1	+	1568	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-367	15	-367	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	38	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454080	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
86135	chr4	-	2532	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	448	0	0	0	3prime_fragment	FALSE	canonical	3	774	junction_12	215.450595691155	6784	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484690	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
86136	chrM	-	2895	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	0	3454	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACAGCTGCTTCGCAGGC	-3	True	NA	69	True	NA	NA	NA	14070	10097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_11566_12643
86137	chr18	+	2991	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	158.489013770111	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9029	False	NA	NA	False	NA	NA	NA	32970342	32999453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32999061_32999265
86138	chr5	+	1994	15	NNC	ENSMUSG00000029017.14	novel	1615	13	NA	NA	-15751	169	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	131.108694585517	2134	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATTGCCTGCATTATTTC	NA	False	NA	NA	False	NA	NA	NA	21926387	21962319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21926490_21935028_21935172_21942173_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
86139	chrM	-	1114	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCGTATGTTTGTCAT	910	False	NA	70	True	NA	NA	NA	15278	14164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14200_15300
86140	chr9	+	938	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	901	-1	-91	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
86141	chr4	+	2222	11	NNC	ENSMUSG00000028729.16	novel	2960	9	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	967.085564983782	4304	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTTGGTCATGATGTCT	NA	False	NA	NA	False	NA	NA	NA	118478069	118484970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016_118483671_118483716_118484204_118484818
86142	chr17	+	1653	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	920	0	210	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	638	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAGTAAGCTCCAGT	NA	False	NA	NA	False	NA	NA	NA	29251646	29261427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
86143	chr15	-	1229	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	31	1404	-7	-1404	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	6238	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGCTACTTTATTCTTT	NA	False	NA	NA	False	NA	NA	NA	10486002	10476268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
86144	chr17	-	1592	3	Intergenic	novelGene_307	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	2	607	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCAGCCCCAATTAAAT	5839	False	NA	NA	False	NA	NA	NA	84182107	84171863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_84173284_84180690_84180797_84182041
86145	chrM	+	932	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	28	-3	28	3	mono-exon	FALSE	NA	NA	NA	NA	NA	15	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	26	False	NA	137	True	NA	NA	NA	2778	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
86146	chr4	-	2498	1	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	26	-341	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGTTCTATTTTGACCTA	9161	False	NA	NA	False	NA	NA	NA	155976157	155973659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155973700_155976200
86147	chr1	+	2719	2	FSM	ENSMUSG00000026584.15	ENSMUST00000162920.2	1825	2	422	-1316	422	4	multi-exon	FALSE	canonical	3	111	junction_1	0	3585	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAATTATTTCTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	163779203	163782687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_163780186_163780950
86148	chr17	+	2095	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	478	0	-2	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	130	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTTGTGTCTAGAAG	NA	False	NA	NA	False	NA	NA	NA	29251646	29261869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
86149	chr6	-	2147	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	70	0	70	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	698	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9339	False	NA	NA	False	NA	NA	NA	128415570	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
86150	chr13	+	1386	7	NNC	ENSMUSG00000085457.4	novel	777	5	NA	NA	-17626	-570	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1583	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCCGAGTAGGAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	34101923	34120043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_34102424_34102721_34102882_34106910_34107052_34109294_34109413_34114007_34114160_34115453_34115629_34119903
86151	chr4	-	3070	10	NNC	ENSMUSG00000063800.6	novel	1516	10	NA	NA	0	-146	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	176.101051237389	2039	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAGGAAAAAATTAATAGG	NA	False	NA	NA	False	NA	NA	NA	108436533	108420514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432690_108434125_108434286_108436181
86152	chr13	-	6652	23	NNC	ENSMUSG00000021711.18	novel	1689	13	NA	NA	-6	32396	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	386.003436374033	1266	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGCGGAGCAGGGCACGG	NA	False	NA	NA	False	NA	NA	NA	104314921	104246260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104246477_104247576_104247696_104254829_104254938_104257974_104258043_104260695_104260795_104265733_104265841_104268443_104268582_104268671_104268736_104271110_104271148_104271342_104271432_104276247_104279844_104280137_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286698_104290799_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
86153	chr8	+	1189	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	-2	6	1	-6	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	2054	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGCCCTACTCTTCAT	5585	False	NA	NA	False	NA	NA	NA	3671548	3674229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
86154	chr13	-	2103	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	-347	0	-347	0	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	2398	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGATGCACTTTTATTT	NA	False	NA	NA	False	NA	NA	NA	54738250	54731997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
86155	chr8	+	1178	5	NNC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	248.840310239318	7046	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCAAACACCCCATTTGT	449	False	NA	NA	False	NA	NA	NA	70583984	70586394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585301_70585742
86156	chr5	+	387	1	Intergenic	novelGene_928	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
86157	chr6	+	2206	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	308	1	29	-1	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	4924	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGCTTTGTCGTTTGTGC	2972	False	NA	NA	False	NA	NA	NA	122285986	122294638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
86158	chr7	-	2183	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	57	-291	-21	291	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	1969	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAAAGAGAATTTGAGAAT	NA	False	NA	NA	False	NA	NA	NA	46569660	46538405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
86159	chr10	+	3034	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	-201	336	1	3	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	431	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1384	False	NA	NA	False	NA	NA	NA	79690261	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
86160	chr11	-	4508	22	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	-7829	0	intron_retention	FALSE	non_canonical	0	0	junction_17	353.407847360473	1382	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	7	True	NA	NA	NA	70868628	70833902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474_70861411_70862586_70862759_70863838_70863900_70864625_70864740_70864894_70865864_70868480
86161	chr1	-	3775	5	FSM	ENSMUSG00000026220.7	ENSMUST00000027422.7	3207	5	-61	-507	-61	507	multi-exon	FALSE	canonical	2	5	junction_3	2.59807621135332	299	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATCTTTTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84912916	84883111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_84885151_84889916_84890895_84900574_84900719_84907007_84907286_84912580
86162	chr3	-	438	3	Antisense	novelGene_ENSMUSG00000068523.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGGGCGGGGCTCCGAA	NA	False	NA	NA	False	NA	NA	NA	146211278	146205634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_146205778_146209049_146209152_146211085
86163	chr1	-	2086	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	-4	813	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	894.885746897334	4237	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTTAGTCTCTCGTGAG	2334	False	NA	NA	False	NA	NA	NA	93729632	93719484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93728229_93728633_93729419
86164	chr6	+	2796	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	34	-1187	34	1187	multi-exon	FALSE	canonical	3	1740	junction_2	62	3052	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGCGCGCAGGTGTACA	8651	False	NA	NA	False	NA	NA	NA	86342661	86348227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86342802_86343591_86343733_86345712
86165	chr8	+	3501	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	101	-130	0	130	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	1462	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAAGCTAGTACACTT	1920	False	NA	NA	False	NA	NA	NA	106937668	106979556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
86166	chr7	+	4199	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	255	38	-75	-38	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	3733	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGCCTCTTTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83541462	83550702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
86167	chr6	-	3551	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	1006	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706867_122707032_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86168	chr8	+	3483	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	-42	31	-42	-31	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	67	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAGAAAAAAAATACAGAAA	1777	False	NA	NA	False	NA	NA	NA	106937525	106979395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
86169	chr6	+	2135	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	76	0	76	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684602	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
86170	chr4	-	856	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	20	-43	20	43	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCCCAGCAGGTGTCCC	NA	False	NA	NA	False	NA	NA	NA	135780684	135776998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
86171	chr17	+	1287	8	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-189104	351	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4250.17502160625	35749	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	6546	False	NA	NA	False	NA	NA	NA	6679965	6875299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680202_6680454_6680586_6772815_6773028_6869171_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
86172	chr18	+	2119	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	346	6	83	-3	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	1820	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAATGTGTCTTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	77861774	77870563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
86173	chr17	+	4815	6	NIC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-2	-1120	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	1288.2053563	397	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTGACAGTGTTCTGA	NA	False	NA	NA	False	NA	NA	NA	13225730	13237901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_13225849_13226747_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
86174	chr6	-	1883	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	118	0	-26	0	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	773	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1685	False	NA	NA	False	NA	NA	NA	7693136	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
86175	chr3	-	1386	5	NNC	ENSMUSG00000004896.17	novel	3254	5	NA	NA	1620	1161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCAGCTATATAGCTCCA	1353	False	NA	-20	True	NA	NA	NA	87830962	87828746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_87829354_87829435_87829532_87829692_87829796_87830238_87830370_87830513
86176	chr5	+	869	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	25	5	-19	-5	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	18149	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACACACACTGTACCGT	4513	False	NA	NA	False	NA	NA	NA	122529965	122544237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
86177	chr18	+	2129	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1588.49534814376	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	NA	False	NA	NA	NA	77861697	77870569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865340_77866185_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
86178	chr9	+	884	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-22	-64	-22	64	mono-exon	FALSE	NA	NA	NA	NA	NA	722	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACACATCCTTGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	84306014	84306898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
86179	chr1	+	1216	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	1282	-15	at_least_one_novel_splicesite	FALSE	canonical	1	163	junction_1	9296.37903635066	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86455810	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86456051_86456894_86456967_86457177_86457275_86457452_86457527_86457686
86180	chr18	-	1684	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	-120	4	-113	-4	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	1877	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTATGTTGGTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	67857778	67798585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
86181	chr7	-	2865	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	0	-403	0	-74	multi-exon	FALSE	canonical	3	1234	junction_21	93.4109735380392	2025	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAACCCAAGTGTGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	143153793	143111040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
86182	chr8	+	4581	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	-265	0	-265	0	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	2505	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACGGTTGCTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	107877006	107914103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
86183	chr6	+	1603	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	40	0	-28	0	multi-exon	FALSE	canonical	3	1740	junction_2	62	3416	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	8657	False	NA	NA	False	NA	NA	NA	86342667	86347040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86342802_86343591_86343733_86345712
86184	chr1	+	3035	5	FSM	ENSMUSG00000026087.12	ENSMUST00000194857.6	501	5	-2363	-171	27	-2	multi-exon	FALSE	canonical	3	895	junction_1	64.9514241568266	7	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCGCTGATGGAGTCC	NA	False	NA	NA	False	NA	NA	NA	37929650	37937417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
86185	chr3	+	1800	16	NNC	ENSMUSG00000028109.15	novel	1444	16	NA	NA	-72	457	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	89.2834188911294	17	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGACCGGCATCTTAATA	NA	False	NA	NA	False	NA	NA	NA	95466915	95495439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691_95495183_95495376
86186	chr4	-	849	7	NNC	ENSMUSG00000047675.16	novel	860	6	NA	NA	-1097	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4720.3273073897	117	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTATGCTGTCTAGGTG	NA	False	NA	NA	False	NA	NA	NA	117014537	117011037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254_117013264_117014357
86187	chr5	-	555	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	-55	-59	-55	59	mono-exon	FALSE	NA	NA	NA	NA	NA	365	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129205636	129205081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129205100_129205600
86188	chrX	+	981	7	Intergenic	novelGene_3997	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10124	7	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAAAGCTCTCTAAAGAC	NA	False	NA	NA	False	NA	NA	NA	101228547	101263558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_101228735_101229102_101229271_101230004_101230174_101230960_101231059_101231427_101231608_101231898_101231906_101263386
86189	SIRV6	+	1241	9	NNC	SIRV6A	novel	1528	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8168.1360318236	18	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1750_2590_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
86190	chr8	-	3839	15	NNC	ENSMUSG00000052926.17	novel	1532	11	NA	NA	-4550	5	intron_retention	FALSE	non_canonical	0	0	junction_10	561.044270507585	2920	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTTATCTATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	85700946	85683233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914_85696389_85696865_85696972_85697062_85697218_85697914_85698036_85698187_85698320_85700626
86191	chr11	-	3515	3	Antisense	novelGene_ENSMUSG00000038290.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTAACTAAAAACCTCCT	NA	False	NA	NA	False	NA	NA	NA	75055270	75048405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75050211_75050647_75050731_75053643
86192	chr2	-	6871	29	NNC	ENSMUSG00000027131.4	novel	983	5	NA	NA	11	78422	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	287.002655448854	1871	12	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTGGGAATCGGGAAGTA	5015	False	NA	NA	False	NA	NA	NA	112198354	112114933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_112115148_112146582_112146629_112163725_112163821_112164711_112164844_112166118_112166268_112167700_112167756_112168201_112168332_112169587_112169833_112172175_112172388_112174170_112174331_112174481_112174583_112174832_112174891_112177243_112177417_112177659_112177781_112179620_112179717_112181619_112181743_112182787_112182892_112183234_112183403_112184515_112184713_112185317_112185495_112186808_112186936_112187827_112187935_112188110_112188298_112188850_112188985_112190760_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198163
86193	chr13	-	912	1	Genic_Genomic	ENSMUSG00000113311.2	novel	NA	NA	NA	NA	-588	-2231	mono-exon	FALSE	NA	NA	NA	NA	NA	8513	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAAGGCGCTGCTCCTA	8408	False	NA	NA	False	NA	NA	NA	74555444	74554532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_74554500_74555400
86194	chrM	-	1274	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1200	-5	1200	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAGGAGAAGGAGAAATG	9245	False	NA	NA	False	NA	NA	NA	6943	5669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5700_6900
86195	chr6	-	3636	12	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-36	75859	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3625.30829467026	2508	86	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAGATGGGGTCATAT	9009	False	NA	NA	False	NA	NA	NA	122719385	122628908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122628916_122684297_122684305_122704785_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86196	chrM	-	954	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	251	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTTATGGGATACAATTA	5379	False	NA	NA	False	NA	NA	NA	1023	69	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_100_1000
86197	chr2	+	7605	11	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078866.11	novel	794	4	NA	NA	-7	68455	intron_retention	TRUE	non_canonical	0	0	junction_3	26.2390929721284	19029	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTACAGGGAGGAAGTTG	NA	False	NA	NA	False	NA	NA	NA	177156518	177270011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177156642_177165078_177165206_177199035_177200435_177200854_177202314_177202907_177203582_177258372_177261565_177261648_177261792_177261875_177262086_177263225_177263286_177263477_177263607_177269922
86198	chr7	+	3535	29	NNC	ENSMUSG00000056394.21	novel	3174	28	NA	NA	-7858	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	297.120953433762	89	21	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	4255	False	NA	NA	False	NA	NA	NA	13003380	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13003573_13011070_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
86200	chrM	+	1297	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	319	-71	319	71	mono-exon	FALSE	NA	NA	NA	NA	NA	36	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	240	False	NA	26	True	NA	NA	NA	5646	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5600_6900
86201	chrX	-	1113	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	41	3	23	-3	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	4587	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537588	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
86202	chr19	+	2711	3	Genic_Genomic	ENSMUSG00000118252.2	novel	801	1	NA	NA	-15687	7279	multi-exon	FALSE	non_canonical	0	0	junction_2	1.5	1	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGTAGATATACCAAAGGT	NA	False	NA	NA	False	NA	NA	NA	61139999	61163766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_61140397_61154982_61157209_61163678
86203	chr8	-	2223	4	ISM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	8008	-1437	8008	1437	3prime_fragment	FALSE	canonical	3	605	junction_1	24.7161665492222	20	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAATACCAATGTCATAAA	NA	False	NA	NA	False	NA	NA	NA	23719667	23715194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621
86204	chr6	+	810	2	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256153	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_148256802_148256934
86205	chr4	+	3247	4	NNC	ENSMUSG00000039105.7	novel	1135	3	NA	NA	79	2284	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	2013.68821375659	883	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTGCTCCACAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	63463087	63471271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_63463237_63466821_63466923_63468181_63468747_63468839
86206	chr11	-	1009	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-78	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7899.66008586586	27	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATATGAAGCCCCCAACT	6389	False	NA	NA	False	NA	NA	NA	69812094	69807555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807563_69807768_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
86208	chrX	-	4810	7	Antisense	novelGene_ENSMUSG00000067194.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	508	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGGCAGTGGCAAATGGC	NA	False	NA	NA	False	NA	NA	NA	158172610	158155221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158155409_158159373_158159459_158160452_158160557_158161532_158161584_158162723_158162807_158165682_158165776_158168403
86209	chr3	+	3259	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	2221	1	585	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	2345	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAAGCCCTGAGTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	41510166	41569078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
86210	chr11	+	1783	4	NNC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	3652	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	248.235103614833	1241	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCCTATGTTTATATCT	4560	False	NA	NA	False	NA	NA	NA	96936072	96940036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_96936085_96937526_96938021_96938238_96938384_96938904
86211	chrM	-	830	1	Antisense	novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS_novelGene_ENSMUSG00000064358.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTGTGGCATATCACTAT	7581	False	NA	NA	False	NA	NA	NA	8607	7777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7800_8600
86212	chr4	-	5340	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	-156	-3978	-156	3978	multi-exon	FALSE	canonical	3	554	junction_1	45.4718149012465	1825	98	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCACCCAAACTGGAACTA	NA	False	NA	NA	False	NA	NA	NA	62438311	62423427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
86213	chr6	-	2632	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	28	37	4	-15	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	872	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTAGAAAAATAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	148847937	148822569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
86214	chr16	-	3448	7	ISM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	59	18	-8	-18	intron_retention	FALSE	canonical	3	2208	junction_2	215.581964304376	38	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCCTTCTGTGTAAAGT	1013	False	NA	NA	False	NA	NA	NA	11021136	11010851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158
86215	chr10	+	1163	7	NNC	ENSMUSG00000006732.15	novel	431	2	NA	NA	-18773	-1716	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCCAGCCATATGGGCT	NA	False	NA	NA	False	NA	NA	NA	126858509	126877335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_126858794_126860802_126860890_126864231_126864359_126865424_126865551_126866330_126866500_126876847_126876968_126877085
86216	chr6	+	879	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	-106	-386	-106	386	mono-exon	FALSE	NA	NA	NA	NA	NA	859	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAACCAAAACACCAA	NA	False	NA	NA	False	NA	NA	NA	116150591	116151470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_116150600_116151500
86217	chr2	-	480	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	465	1	-37	-1	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	37424	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCTTCATGTTTTACA	NA	False	NA	NA	False	NA	NA	NA	38895171	38891592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
86218	chr4	+	698	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33246	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	272.465337244942	10667	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	146500233	146550672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500373_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
86219	chr8	+	3423	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	233	2094	219	-2094	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	132	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGATGTCATGCGCTCT	NA	False	NA	NA	False	NA	NA	NA	111760766	111782202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
86220	chr7	+	4459	19	NIC	ENSMUSG00000030978.11	novel	747	4	NA	NA	149	663	combination_of_known_junctions	FALSE	canonical	2	18	junction_1	223.253717152083	10	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCACCCCCCCCCCACCCC	NA	False	NA	NA	False	NA	NA	NA	102091398	102119641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_102091547_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
86221	chr19	-	2041	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	62	5	62	-5	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3825	False	NA	NA	False	NA	NA	NA	7017273	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
86222	chr6	-	3591	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	21	89	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706908_122707033_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86224	chr3	+	1653	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	1	-269	1	190	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	3365	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGTGTGTTATTAACAAC	NA	False	NA	NA	False	NA	NA	NA	95466989	95495172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
86225	chr12	+	1785	7	NNC	ENSMUSG00000021243.15	novel	731	8	NA	NA	13	2	intron_retention	FALSE	canonical	0	0	junction_1	826.950354549104	36	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAAATGCTATGTTGTC	4726	False	NA	NA	False	NA	NA	NA	85017767	85030067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_85017836_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85027377_85029009_85029105_85029942
86226	chr2	-	2348	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	0	-23	intron_retention	FALSE	non_canonical	0	0	junction_1	4169.46393510879	25	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGGATCAGTGCCTCCTG	3736	False	NA	NA	False	NA	NA	NA	154734751	154713360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154713588_154713646_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
86227	chr18	+	3993	32	Intergenic	novelGene_4537	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2021	8	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGTCCGTGGACTACAAT	9370	False	NA	NA	False	NA	NA	NA	42335351	42395254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_42335784_42343084_42343218_42344227_42344328_42345574_42345677_42347823_42347935_42349915_42350028_42350532_42350674_42351568_42351709_42352921_42353014_42354543_42354727_42358817_42358883_42360300_42360359_42361070_42361284_42361722_42361861_42362692_42362777_42362855_42362918_42362998_42363092_42366863_42366939_42367641_42367784_42368546_42368602_42369645_42369721_42369799_42369891_42374966_42375194_42375768_42375836_42376030_42376094_42376839_42376952_42377810_42377976_42379002_42379145_42383895_42383975_42384357_42384446_42390134_42390254_42395020
86228	chr6	-	1342	9	NNC	ENSMUSG00000053768.14	novel	1550	8	NA	NA	49	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.955521368006	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAAGACTGGCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	33037103	32769165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_32769467_32769568_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
86229	chr12	+	3416	5	NIC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	0	820	intron_retention	FALSE	canonical	3	3420	junction_4	231.739481961965	7	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9259	False	NA	NA	False	NA	NA	NA	100165787	100173574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_100165976_100168651_100168683_100169833_100171979_100172356_100172493_100172658
86230	chr4	-	4386	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	29	-8	29	8	multi-exon	TRUE	canonical	3	482	junction_1	226.647613038099	4418	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTTTGAGTGAATGT	2521	False	NA	NA	False	NA	NA	NA	129229134	129200884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
86231	chr17	+	2486	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	-2	-38	-2	38	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	12198	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGCTCCTGCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	13135266	13143992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
86232	chr17	-	925	8	ISM	ENSMUSG00000036775.14	ENSMUST00000237265.2	1993	9	-4	1781	-4	-105	5prime_fragment	FALSE	canonical	3	125	junction_6	25.7982755316739	24	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGTACCTGGCCAGCCC	NA	False	NA	NA	False	NA	NA	NA	26309198	26301984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
86233	chr7	+	5379	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	262	-1149	-68	1149	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	56	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAAATGTAAATATTCTT	NA	False	NA	NA	False	NA	NA	NA	83541469	83551889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_83541684_83544737_83544971_83546957
86234	chr5	-	2430	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	-14	747	-14	-747	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	217	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTATAGTTCTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	30278629	30264571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
86235	chrX	+	2628	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	19	-9	0	9	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	84	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTTCCAGGTTGTTCAC	NA	False	NA	NA	False	NA	NA	NA	104123380	104128801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
86236	chr2	-	480	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	465	1	-37	-1	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	59	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCTTCATGTTTTACA	NA	False	NA	NA	False	NA	NA	NA	38895171	38891592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
86237	chr13	-	2054	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	96	11	96	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	96	72	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGAAAGTCCTAGCC	NA	False	NA	NA	False	NA	NA	NA	96217788	96215734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_96215700_96217800
86238	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
86239	chr11	-	1216	8	NNC	ENSMUSG00000042709.16	novel	949	8	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	149.751085989725	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATCTTTGGTCTAAGCA	NA	False	NA	NA	False	NA	NA	NA	60307858	60291454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60291648_60292097_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300411_60300457_60307576
86240	chr5	+	942	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	275	-12	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121342596	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
86241	chr6	-	1510	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	136	529	52	-62	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	6958	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTTTCATCAATGTATA	NA	False	NA	NA	False	NA	NA	NA	87827952	87820125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
86242	chr13	-	2649	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1986.9610217719	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	4793	False	NA	NA	False	NA	NA	NA	58550288	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
86243	chr14	+	399	1	FSM	ENSMUSG00000060143.8	ENSMUST00000227553.2	383	1	0	-16	0	16	mono-exon	FALSE	NA	NA	NA	NA	NA	159	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATGACTGCAAGCATGCA	NA	False	NA	NA	False	NA	NA	NA	105919262	105919661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_105919300_105919700
86244	chr12	-	1432	13	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	-8	5226	-8	-4925	5prime_fragment	FALSE	canonical	3	824	junction_1	124.818840947813	65	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAATTATGTAATTTTAA	NA	False	NA	NA	False	NA	NA	NA	54842496	54798359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
86245	chr4	+	10643	12	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-18	11718	intron_retention	FALSE	non_canonical	0	0	junction_2	58.0709170321829	530	270	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTGGAAAAGGCACAACTG	NA	False	NA	NA	False	NA	NA	NA	147576855	147681373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147639766_147639861_147661528_147661587_147662481_147663187_147664380_147668052_147668476_147670412_147670645_147672013_147678310_147678463_147678638_147678978_147679052_147679219_147679262_147679342_147679449
86246	chr9	-	767	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	15	-14	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	53	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
86247	chr19	-	3970	18	FSM	ENSMUSG00000041360.9	ENSMUST00000076219.6	3471	18	-39	-460	-39	460	multi-exon	TRUE	canonical	3	1256	junction_17	93.320929312512	2388	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAAAACCTTTTAAGTTG	NA	False	NA	NA	False	NA	NA	NA	27407264	27365637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
86248	chr6	-	3679	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	9919	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706295_122706332_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86249	chr11	+	1837	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	47	216	3	-216	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	84	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTTGACAGTATTGTTT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
86250	chr9	+	2899	4	Antisense	novelGene_ENSMUSG00000047036.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1762	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCCCACTTCCTCCGCGGG	1223	False	NA	NA	False	NA	NA	NA	122684182	122695028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_122686230_122686537_122686703_122690772_122691409_122694977
86251	chr18	+	7585	41	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-25995	0	intron_retention	TRUE	non_canonical	0	0	junction_1	527.505665846349	52	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGGATTCCAAATTTAGAA	NA	False	NA	NA	False	NA	NA	NA	34731670	34765858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34732623_34732837_34733298_34735259_34735303_34735726_34735832_34736761_34736937_34737649_34737722_34737885_34737977_34738526_34738741_34739471_34739520_34739727_34739821_34740090_34740547_34740829_34741109_34741470_34741679_34742855_34743001_34743460_34743679_34744181_34744322_34746089_34746154_34746267_34746349_34747499_34747626_34747801_34747851_34749717_34749787_34756506_34756605_34757590_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
86252	chr1	-	3872	5	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	-34	809	combination_of_known_junctions	FALSE	canonical	3	119	junction_3	852.002494127805	2637	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAAGCTTAGTCTCTCG	2276	False	NA	NA	False	NA	NA	NA	93729690	93719488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93728633_93729419
86254	chr1	-	2150	13	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	26	6141	-10	241	5prime_fragment	FALSE	canonical	3	5685	junction_12	952.613014584388	1	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGGAAGAGGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	86287096	86278581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
86255	chr5	-	3499	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	-68	-862	-68	862	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	499	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTCATCAATAAATTCC	NA	False	NA	NA	False	NA	NA	NA	24782533	24769480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
86256	chr17	+	1823	3	FSM	ENSMUSG00000024038.18	ENSMUST00000189436.3	2021	3	52	146	17	-146	multi-exon	FALSE	canonical	2	5	junction_2	1848	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCGGTGGTGGCGCACA	NA	False	NA	NA	False	NA	NA	NA	31739175	31748226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_31739236_31740542_31740667_31746587
86257	chr11	-	1120	10	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	1584	223	1450	0	3prime_fragment	FALSE	canonical	3	16927	junction_8	1793.60603736828	279	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111622	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547
86258	chr10	+	1272	3	NIC	ENSMUSG00000063457.15	novel	500	4	NA	NA	7	-2	intron_retention	FALSE	canonical	3	5732	junction_1	998.5	115	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGGTTTTTGTTTTT	6349	False	NA	NA	False	NA	NA	NA	80128293	80129946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_80128318_80128608_80129711_80129800
86259	chr19	+	863	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	58	8	0	-2	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTCTTTTCTTTGTGA	4927	False	NA	NA	False	NA	NA	NA	9960067	9962454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
86260	chr8	-	1132	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	417	376	163	-376	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	47	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATCTCCCTGCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	46663904	46660209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
86261	chr2	+	2128	5	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6637.28493060227	658	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959053_29960443_29960600_29960930
86262	chr9	+	1796	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	276	125	-34	-125	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	57	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCCACCAGTTCTTATG	NA	False	NA	NA	False	NA	NA	NA	108183603	108215008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
86263	chr4	+	1570	2	Antisense	novelGene_ENSMUSG00000042367.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGTGCCCAAGACCCACA	4266	False	NA	NA	False	NA	NA	NA	127219027	127224327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_127220563_127224292
86264	chr7	-	1048	6	NIC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-4	5	intron_retention	FALSE	canonical	3	4974	junction_1	3669.31799657648	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGGCCTGACTGGATT	8418	False	NA	NA	False	NA	NA	NA	99132862	99128094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131908_99132798
86265	chr1	+	3039	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	3	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	110.424453813456	1513	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTCACTGATAGCTGT	8322	False	NA	NA	False	NA	NA	NA	191307876	191353674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318689_191323920_191324022_191326540_191326586_191328284_191328485_191328998_191329122_191334417_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347940_191349923_191350023_191351707_191351894_191353276
86266	chr13	-	611	4	ISM	ENSMUSG00000021660.15	ENSMUST00000134542.2	780	5	2691	-45	-2170	0	3prime_fragment	FALSE	canonical	3	5972	junction_2	455.091443802476	330	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98450193	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146
86267	chr10	+	2012	2	Genic_Genomic	ENSMUSG00000112490.2	novel	567	1	NA	NA	-2441	732	multi-exon	FALSE	canonical	1	2	junction_1	0	573	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAATATAGAATATGTT	NA	False	NA	NA	False	NA	NA	NA	14460238	14463978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_14460552_14462279
86268	chr4	-	1860	10	Fusion	ENSMUSG00000029001.16_ENSMUSG00000055401.15	novel	1938	6	NA	NA	-43	-9	multi-exon	FALSE	canonical	2	18	junction_5	377.157824645543	23	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAACCCAGCCTGGTTTG	NA	False	NA	NA	False	NA	NA	NA	148244377	148230253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
86269	chr4	-	1922	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	62	2423	-59	-6	multi-exon	FALSE	canonical	3	482	junction_1	226.647613038099	356	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATATAGCCCCATGCTGG	2554	False	NA	NA	False	NA	NA	NA	129229101	129203315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
86270	chr7	+	2199	5	Antisense	novelGene_ENSMUSG00000070436.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2170	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCTGGCTCCCGCCCCT	NA	False	NA	NA	False	NA	NA	NA	98994634	99002465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98995632_98996133_98996367_98996474_98996574_98998009_98998674_99002259
86271	chr10	-	952	2	NNC	ENSMUSG00000093674.8	novel	544	3	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_1	0	508	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128384983	128383982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128384435_128384483
86272	chrUn_MU069435v1	-	589	1	Intergenic	novelGene_4758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	589	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_600
86274	chr14	-	2999	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	1	-383	0	215	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTCAAGTTAAAATGTTC	8749	False	NA	NA	False	NA	NA	NA	52341461	52310618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
86275	chr4	+	1167	9	Antisense	novelGene_ENSMUSG00000028455.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	295	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGGAAGACGAGAGTAGG	NA	False	NA	NA	False	NA	NA	NA	43028018	43031109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43028293_43028936_43029069_43029280_43029358_43029491_43029634_43029765_43029904_43030047_43030150_43030235_43030299_43030435_43030535_43030969
86276	chr6	+	4092	11	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	188	50	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAAGCAGCTGAGCAC	8810	False	NA	NA	False	NA	NA	NA	122704783	122720460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708555_122709328_122709432_122709728_122709831_122712378_122712570_122713537_122713701_122714016_122714257_122716788_122716953_122717346_122717437_122719077_122719276_122720138
86278	chr12	+	895	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	31	215	6	-215	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	322	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTTCTGTTCATGATTAT	NA	False	NA	NA	False	NA	NA	NA	21366420	21373605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
86280	chr8	-	3765	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	50	-22	-20	22	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	1827	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGGTTTCTTTATAGATT	NA	False	NA	NA	False	NA	NA	NA	80438319	80410068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
86281	chr9	+	910	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	67	0	67	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	2366	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78099295	78116631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
86282	chr15	+	4002	16	Antisense	novelGene_ENSMUSG00000022464.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1857	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCAGCCTAGCCACCAAT	NA	False	NA	NA	False	NA	NA	NA	96892696	96953896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96894972_96896322_96896421_96897368_96897515_96903700_96903825_96906292_96906395_96906538_96906621_96906744_96907016_96907823_96907886_96907994_96908083_96908168_96908247_96910780_96910872_96911313_96911393_96914008_96914125_96914641_96914733_96917604_96917742_96953734
86283	chr13	-	2372	9	NNC	ENSMUSG00000021427.11	novel	9333	8	NA	NA	-36	-6797	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	334.416072243844	13	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGAGCTGTATAATCTG	5944	False	NA	NA	False	NA	NA	NA	38178095	38162173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_38162344_38162409_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
86284	chrM	+	885	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	75	-3	75	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	73	False	NA	-77	True	NA	NA	NA	2825	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
86286	chr1	+	2601	12	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	-2355	1294	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	393.636762544413	1321	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAACGAATAGTATGTTT	NA	False	NA	NA	False	NA	NA	NA	15873514	15915570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15873599_15875706_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144_15913956_15915163
86287	chr2	-	2852	5	NNC	ENSMUSG00000078865.9	novel	531	4	NA	NA	3113	1727	intron_retention	FALSE	non_canonical	0	0	junction_1	524.596035059359	17935	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAAGGTATGTTTCTGTC	5461	False	NA	NA	False	NA	NA	NA	177266879	177259269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177259412_177260738_177261434_177261517_177263288_177263479_177263607_177266761
86288	chr7	+	1942	4	NNC	ENSMUSG00000038503.16	novel	4492	3	NA	NA	96	1096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	621.56951877217	3414	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGATAGGTATATTC	NA	False	NA	NA	False	NA	NA	NA	83541305	83548384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_83541369_83541464_83541684_83544737_83544971_83546957
86289	chr5	+	1312	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	-2	-22	2	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	3953	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAAGCCTGGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
86290	chr6	-	2402	2	ISM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	11044	-1	1698	1	3prime_fragment	FALSE	canonical	3	8407	junction_1	0	127	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122708437	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351
86291	chr5	-	2300	12	NNC	ENSMUSG00000029363.15	novel	2796	11	NA	NA	3	-96	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	527.296206373797	11	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACTGCCTCCATAAAGC	NA	False	NA	NA	False	NA	NA	NA	117527084	117516565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_117516674_117516743_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
86292	chr7	+	1305	6	NIC	ENSMUSG00000030649.19	novel	818	5	NA	NA	-49	0	intron_retention	FALSE	canonical	3	43	junction_1	203.291318063512	116	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	8223	False	NA	NA	False	NA	NA	NA	101546020	101548745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_101546568_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
86293	chrM	-	1124	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCGTATGTTTGTCAT	900	False	NA	60	True	NA	NA	NA	15288	14164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14200_15300
86294	chr3	-	4273	5	NNC	ENSMUSG00000097032.3	novel	511	3	NA	NA	-21683	-2323	intron_retention	FALSE	non_canonical	0	0	junction_1	0	28022	99	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCGGAGGTCGGGCCGGGA	NA	False	NA	NA	False	NA	NA	NA	135166109	135144309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_135144459_135145403_135145558_135160944_135161011_135161106_135164635_135165733
86295	chr11	+	1903	6	Fusion	ENSMUSG00000010362.10_ENSMUSG00000119776.1	novel	1124	7	NA	NA	0	-5	intron_retention	FALSE	canonical	3	866	junction_1	132.095420056866	102	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATAGTGTGTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	101518191	101526921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
86296	chr11	+	1789	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	220	13	-55	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	4908	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5351	False	NA	NA	False	NA	NA	NA	52251906	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
86297	chr12	+	610	6	Antisense	novelGene_ENSMUSG00000061477.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGCTTCACCCTGAGG	5835	False	NA	NA	False	NA	NA	NA	28681084	28685648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_28681191_28681620_28681774_28683766_28683832_28684207_28684351_28685413_28685486_28685577
86298	chr11	-	2682	18	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	16	4720	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	425.815131191409	165	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCGTTTCAAACCAGGAT	NA	False	NA	NA	False	NA	NA	NA	75239103	75184271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75184286_75191353_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
86299	chr17	-	1781	11	NNC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	27	54709	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.5203844159715	61	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTTTTGAGACAGGGTT	NA	False	NA	NA	False	NA	NA	NA	26309167	26245472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26245480_26254005_26254024_26300375_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26309070
86300	chr19	-	1459	5	Antisense	novelGene_ENSMUSG00000025066.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	220.40346526314	19	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACCTCGCCCCGGGGGC	NA	False	NA	NA	False	NA	NA	NA	47723952	47720196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_47720264_47721070_47721222_47721269_47721428_47721957_47722349_47723260
86301	chr4	-	1843	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	-50	0	-50	0	multi-exon	TRUE	canonical	3	1043	junction_4	200.755117703013	1861	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	False	NA	NA	False	NA	NA	NA	118294599	118290097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
86302	chr6	-	1976	13	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-34949	76	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	2383.48313486097	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGCCTAAGTGGATCA	NA	False	NA	NA	False	NA	NA	NA	7728203	7675393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108_7693378_7728126
86303	chr11	+	1791	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	218	13	-57	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	2383	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5349	False	NA	NA	False	NA	NA	NA	52251904	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
86304	chr10	-	14842	13	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	1138	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_12	60.1793615416079	1169	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCACCTGGTAGTCTAT	4129	False	NA	NA	False	NA	NA	NA	62721965	62640355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62721317
86305	chr5	+	3045	5	NNC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	369.737744894946	28	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTGTTTGTTTCTGTT	764	False	NA	NA	False	NA	NA	NA	129792570	129799620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129792614_129792747_129793006_129793790_129793931_129794979_129795774_129797810
86306	chr4	-	8939	6	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	786	145	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAAGACCGTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	42230010	41877210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41881897_41881987_41882569_42014606_42014614_42056189_42056202_42207622_42207630_42226364
86307	chr1	-	1574	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	783	1	NA	NA	-161	2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	118	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24652757_24652808
86308	chr11	-	4229	8	NNC	ENSMUSG00000025140.16	novel	2914	8	NA	NA	-12	-1053	intron_retention	FALSE	non_canonical	0	0	junction_1	354.891130187434	1482	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACTACTTCCTGCTGAT	NA	False	NA	NA	False	NA	NA	NA	120534542	120527590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120528824_120529466_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984
86309	chr3	+	1339	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	-12	12	-12	-12	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	2905	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGTATTTATAGAAACAG	NA	False	NA	NA	False	NA	NA	NA	87826800	87830957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
86310	chr6	-	3436	12	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	17	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	3625.30829467026	66	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8930	False	NA	NA	False	NA	NA	NA	122719464	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706320_122706420_122706867_122707032_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86311	chr2	+	3656	12	NNC	ENSMUSG00000027306.16	novel	2960	11	NA	NA	12	309	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	372.475702241543	1974	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATCTTTTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	119449221	119482034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373_119480923_119481176
86312	chr16	+	1618	14	NNC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	-28	3106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	89.2800261924417	991	6	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	36648718	36683040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723_36679732_36682874
86313	chr11	-	3347	3	FSM	ENSMUSG00000020415.17	ENSMUST00000148130.2	388	3	-21	-2938	-7	-653	multi-exon	FALSE	canonical	3	2427	junction_2	3676	1228	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATATATATATATATATA	NA	False	NA	NA	False	NA	NA	NA	43317061	43312510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_43315725_43316409_43316509_43317027
86314	chr3	-	430	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	57	-7	1	-1	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	11	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCGTTATCTGTGATTT	NA	False	NA	NA	False	NA	NA	NA	130523990	130520480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
86315	chrM	+	813	3	Genic_Genomic	ENSMUSG00000064341.1	novel	957	1	NA	NA	5	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	3	True	NA	114	True	NA	NA	NA	2755	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2781_2864_2994_3051
86316	chr7	-	777	6	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	1036	986	932	0	3prime_fragment	FALSE	canonical	3	4974	junction_1	3734.4104969861	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	9371	False	NA	NA	False	NA	NA	NA	99131909	99128088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776
86317	chr9	-	752	1	Antisense	novelGene_ENSMUSG00000062933.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCAGGTGCTTCTTATCA	9516	False	NA	NA	False	NA	NA	NA	96778418	96777666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_96777700_96778400
86318	chr12	+	1513	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2510	-2	809	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	2972	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	9257	False	NA	NA	False	NA	NA	NA	100165785	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
86319	chr11	-	2591	1	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	223	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTTTCCCAAGGATGGA	NA	False	NA	NA	False	NA	NA	NA	57952860	57950269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57950300_57952900
86320	chr7	+	4173	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	-6	-170	-6	170	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	1713	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATCATTTTTATCTATG	NA	False	NA	NA	False	NA	NA	NA	102090895	102119148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
86321	chr8	-	671	1	NIC	ENSMUSG00000003809.15	novel	2167	11	NA	NA	2330	1072	mono-exon	FALSE	NA	NA	NA	NA	NA	4295	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCCGCTATGGCATCA	NA	False	NA	NA	False	NA	NA	NA	85616965	85616294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85616300_85617000
86322	chr4	-	4168	12	NIC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-34	8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	305.162062349697	147	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTTTGAGTGAATGT	9982	False	NA	NA	False	NA	NA	NA	129229197	129200884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_129203670_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
86323	chrM	+	1677	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	727	-580	727	580	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	9	False	NA	31	True	NA	NA	NA	12468	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12500_14100
86324	chrM	+	847	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	107	1	107	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	2	False	NA	-2	True	NA	NA	NA	176	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_200_1000
86325	chr19	-	1663	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	41	9	41	-1	multi-exon	FALSE	canonical	3	1089	junction_1	76.373351955305	2524	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGCCTCTGCTGTCTGGC	NA	False	NA	NA	False	NA	NA	NA	7183640	7175575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
86326	chr15	+	1930	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	110	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGCACCACACGCACGAT	528	False	NA	NA	False	NA	NA	NA	36771947	36793888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793724
86327	chr4	+	1396	9	FSM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	17	5	0	-5	multi-exon	FALSE	canonical	3	659	junction_3	79.965617611571	4211	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACATTCAAACGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	135673775	135689923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
86328	chr4	+	1404	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	300	12	300	-12	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	2303	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTGGTAAAGCCTAGTT	50	False	NA	NA	False	NA	NA	NA	46451201	46472645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
86329	chr14	+	4473	20	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	0	48290	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	273.635349889486	2660	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAAGTGACCACGGTGC	NA	False	NA	NA	False	NA	NA	NA	54598297	54655420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774_54607344_54607549_54607734_54610396_54610546_54611297_54611398_54611672_54611775_54612004_54612128_54615221_54615367_54616451_54616577_54645957_54646511_54654049_54654230_54655359
86330	chr6	-	3697	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3007.53043764038	168	95	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712550_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86331	chr17	+	1834	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	6	9	6	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	12	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCATTAACGGGAGACTG	NA	False	NA	-19	True	NA	NA	NA	40157249	40159083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159100
86332	chr8	+	2630	9	Antisense	novelGene_ENSMUSG00000031701.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCGCGACCCGGACCAC	NA	False	NA	NA	False	NA	NA	NA	86264497	86281919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_86266036_86266677_86266806_86266935_86267080_86273139_86273338_86275191_86275327_86275510_86275594_86279816_86280040_86280545_86280603_86281795
86333	chr6	-	2826	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	34	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3588.65398722139	282	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8947	False	NA	NA	False	NA	NA	NA	122719447	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712412_122719378
86334	chr7	+	1497	4	ISM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	17868	-6	2200	0	3prime_fragment	FALSE	canonical	3	49	junction_3	38.9444048184931	33	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28434124	28437569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28434798_28435492_28435629_28436763_28436972_28437089
86335	chr6	-	3468	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-55	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3791.82357843822	18	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8990	False	NA	NA	False	NA	NA	NA	122719404	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706472_122706529_122707122_122708490_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86336	chrM	+	850	2	Genic_Genomic	ENSMUSG00000064337.1	novel	955	1	NA	NA	5	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	82	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	2	True	NA	6	True	NA	NA	NA	74	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_686_784
86337	chr1	-	2115	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	183	125	183	-125	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCTGTGTCACCACATGAG	4638	False	NA	NA	False	NA	NA	NA	55127000	55117118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
86338	chr17	-	3548	2	NNC	ENSMUSG00000118642.2	novel	714	4	NA	NA	-2	5106	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTACCTTCTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	40159720	40153887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_40154905_40157189
86339	chr16	-	3078	4	NNC	ENSMUSG00000002844.10	novel	2966	4	NA	NA	24	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	590.101874443915	3176	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTGGCTGGAGACCT	NA	False	NA	NA	False	NA	NA	NA	38273020	38264393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38266467_38267609_38267971_38270490_38271005_38272890
86340	chr6	-	3468	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-55	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3791.82357843822	1319	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8990	False	NA	NA	False	NA	NA	NA	122719404	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706472_122706529_122707122_122708490_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86341	chr17	+	3316	12	NNC	ENSMUSG00000091586.3	novel	1693	13	NA	NA	3	5	intron_retention	FALSE	non_canonical	0	0	junction_10	13.8748836641687	1914	66	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAAATGAGAAATTA	NA	False	NA	NA	False	NA	NA	NA	32725438	32749122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32725553_32725867_32726067_32736867_32737215_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747019_32747338_32747690
86342	chr6	-	7252	11	NNC	ENSMUSG00000061838.8	novel	3367	11	NA	NA	-5654	-5	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_10	230.435869603671	11	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAGCCTCACAGTTCTTG	NA	False	NA	NA	False	NA	NA	NA	95640103	95451127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95634968
86343	chr6	-	1675	11	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	76	-389	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1682.35336359518	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCACGTGGTAGAAGGG	9345	False	NA	NA	False	NA	NA	NA	128415564	128407454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407652_128407728_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
86345	chr11	-	1562	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	295	junction_10	702.611101534839	8	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9585	False	NA	NA	False	NA	NA	NA	5828212	5822187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828187
86346	chrM	+	2484	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2718_2850
86347	chr9	-	3927	24	NNC	ENSMUSG00000032180.12	novel	1378	4	NA	NA	-7	50230	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.65388042445	1176	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCTGTGTACACACAATC	NA	False	NA	NA	False	NA	NA	NA	21421490	21368618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21368707_21368797_21368871_21376875_21377027_21378826_21379030_21382636_21382736_21383906_21384068_21385825_21385971_21387768_21387903_21389574_21389642_21391699_21391840_21392626_21392714_21396944_21397016_21401036_21401089_21401951_21401962_21405796_21405912_21410551_21410662_21411548_21411663_21414834_21415003_21415725_21415961_21416759_21417008_21418714_21419688_21420226_21420411_21420549_21420648_21421289
86348	chr4	-	1236	8	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	7	-4	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	119.008660291971	212	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAAAAGGTCTGTTTAT	9142	False	NA	NA	False	NA	NA	NA	155976176	155973322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976028
86349	chr19	-	3811	18	NNC	ENSMUSG00000041360.9	novel	3471	18	NA	NA	28	-51	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_17	358.726852935909	14	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGCTGCGATTAAAGATG	NA	False	NA	NA	False	NA	NA	NA	27407192	27366148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376505_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27406767
86350	chr8	-	1733	7	FSM	ENSMUSG00000055553.17	ENSMUST00000138260.8	917	7	294	-1110	121	932	multi-exon	FALSE	canonical	3	33	junction_6	10452.4158770433	349	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCGTGATGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	70980312	70959989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70980294
86351	chr9	-	733	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	6	29	6	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	112	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256262	50255529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
86352	chr11	+	10341	54	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-139096	1618	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	53.0080227946495	14	168	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATGATTTGAGAATTAT	NA	False	NA	NA	False	NA	NA	NA	62210189	62406861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62210252_62211821_62212042_62212215_62212274_62216314_62216458_62217933_62218074_62220268_62220481_62220801_62220966_62221621_62221751_62224488_62224985_62225323_62225486_62228368_62228523_62228926_62229074_62229683_62229898_62231236_62231458_62233823_62234177_62235456_62235714_62236060_62236142_62240172_62240322_62242204_62242371_62244058_62244157_62245190_62245299_62245396_62245478_62249679_62249842_62250586_62250760_62257788_62257984_62260117_62260250_62263901_62264447_62267458_62267587_62269321_62269482_62272235_62272297_62273986_62274206_62275547_62275669_62280516_62280621_62281806_62281858_62283328_62283510_62285963_62286055_62289090_62289263_62292025_62292095_62294609_62294678_62295235_62295293_62301645_62301760_62310423_62310606_62313699_62313893_62324387_62324529_62329166_62329340_62349278_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403794_62404656_62404748_62405777_62406383
86353	chr6	-	2852	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3588.65398722139	240	56	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712412_122719383
86354	chr7	+	1233	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	8	3	-7	-3	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	5727	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTGAAGTGTTCATG	1315	False	NA	-81	True	NA	NA	NA	133311069	133322871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
86355	chr6	-	2410	2	ISM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	11036	-1	1690	1	3prime_fragment	FALSE	canonical	3	8407	junction_1	0	175	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122708445	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351
86356	chrX	+	2042	7	NNC	ENSMUSG00000031158.12	novel	2381	6	NA	NA	-42	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	343.828809147808	1892	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCACACCTTGCTTGCTG	1147	False	NA	NA	False	NA	NA	NA	7765553	7774584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726_7773990_7774364
86357	chr17	+	2418	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	1	628	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40158800_40158857
86358	chr15	+	2038	9	Antisense	novelGene_ENSMUSG00000018042.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2848	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCGGTCTCAACACCTCG	2202	False	NA	NA	False	NA	NA	NA	83037695	83056408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83038926_83043027_83043127_83044304_83044393_83044540_83044619_83045017_83045150_83046048_83046160_83046433_83046504_83050273_83050408_83056312
86359	chr6	+	3934	5	NIC	ENSMUSG00000029911.15	novel	1188	6	NA	NA	557	830	intron_retention	FALSE	canonical	3	2472	junction_2	182.612123091541	3	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTTATATCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	40449016	40458759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
86360	chr5	+	849	4	NNC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	357.630473471649	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCAGCTTGATTTTTCA	777	False	NA	NA	False	NA	NA	NA	129792583	129795547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129792614_129792747_129792859_129793790_129793931_129794979
86361	chr3	-	940	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	23	-78	-23	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	149779257	149778317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778300_149779300
86362	chr16	+	4065	10	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1690.99425059802	504	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	NA	False	NA	NA	NA	84571276	84622816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674_84622524_84622569
86363	chrM	+	1597	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	19	-71	19	71	mono-exon	FALSE	NA	NA	NA	NA	NA	63	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	20	False	NA	NA	False	NA	NA	NA	5346	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
86364	chr5	-	949	7	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-1	0	intron_retention	FALSE	canonical	3	5084	junction_6	3352.87283534583	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548743	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65548198_65548288_65548336_65548718
86365	chr1	+	1132	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9439.51567547297	3	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454447	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457217_86457463_86457527_86457686
86366	chr5	+	2332	1	Antisense	novelGene_ENSMUSG00000040731.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAACCTAAGCTCATTCT	NA	False	NA	NA	False	NA	NA	NA	134648017	134650349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_134648000_134650300
86367	chr4	-	4293	3	NNC	ENSMUSG00000051557.16	novel	883	4	NA	NA	8	638	intron_retention	FALSE	non_canonical	0	0	junction_1	193.5	70	91	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCCCCAGCCACCCTGG	9114	False	NA	NA	False	NA	NA	NA	155976204	155971697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155973191_155973321_155975127_155975209
86368	chr2	+	2295	10	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAGCGAAAGGGAGCGACA	NA	False	NA	NA	False	NA	NA	NA	154713385	154734738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102_154730114_154730187_154730283_154734611
86369	chr2	+	2529	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	122	1021	-3	-5	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	133	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATTCTCAGGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	34662103	34666538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
86370	chr12	-	1316	13	ISM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	-1	1006	-1	-1006	5prime_fragment	FALSE	canonical	3	814	junction_12	101.540632261179	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCCTGGAGAGGTGGGAA	NA	False	NA	NA	False	NA	NA	NA	87519045	87497685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
86371	chr2	-	2197	4	Antisense	novelGene_ENSMUSG00000027523.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	9.0921211313239	12	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACTTTCATGCCCTCT	533	False	NA	NA	False	NA	NA	NA	174169172	174163263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_174163447_174163764_174163991_174165456_174165759_174167686
86372	chr2	-	1384	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	-12	0	-12	0	multi-exon	FALSE	canonical	3	51	junction_1	29	73	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	177720281	177710282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177711409_177711615_177711743_177720150
86373	chr1	+	2175	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	38	-1164	2	1164	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	2008	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAATCTGCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	39406960	39412156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
86374	chr3	-	863	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	109	5	109	-5	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	37	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049900	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
86375	chr15	-	1422	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	3	-70	3	70	multi-exon	FALSE	canonical	3	225	junction_10	74.8304750753328	2	48	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTGGGACCCACTGCCC	8843	False	NA	NA	False	NA	NA	NA	75801678	75796454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
86376	chr7	-	2674	17	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	466.677313401616	197	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTACATGTCTTAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	33929717	33900761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901909_33902265_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
86377	chr10	+	778	7	FSM	ENSMUSG00000020056.17	ENSMUST00000020248.16	1052	7	108	166	17	-14	multi-exon	FALSE	canonical	3	318	junction_4	34.2377309736236	44	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTATAATCTTTCAATAT	NA	False	NA	NA	False	NA	NA	NA	88037062	88081854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055111_88055223_88070255_88070321_88081617
86378	chrM	+	634	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	510	0	510	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	5	True	NA	38	True	NA	NA	NA	14654	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14700_15300
86379	chr15	+	2314	18	NNC	ENSMUSG00000022390.12	novel	5740	23	NA	NA	-24	2184	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_17	51.2595674249711	135	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAATAGGGCATGATGGCA	1988	False	NA	NA	False	NA	NA	NA	81629297	81670841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184_81653383_81655938_81656098_81656628_81656710_81657486_81657544_81660006_81660050_81660478_81660673_81660981_81661304_81662073_81662133_81662810_81662911_81663309_81663472_81664604_81664811_81666159_81666261_81667225_81667408_81670082_81670169_81670820
86380	chr17	+	2789	9	FSM	ENSMUSG00000024158.18	ENSMUST00000118788.8	1191	9	-1598	0	-1598	0	multi-exon	FALSE	canonical	3	330	junction_6	27.6812210713328	1793	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	NA	False	NA	NA	NA	25067865	25083424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
86381	chr11	-	903	7	NNC	ENSMUSG00000091228.2	novel	991	8	NA	NA	2355	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2643.02595943026	26840	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCAGTGTTCAGTACTC	2968	False	NA	NA	False	NA	NA	NA	93856764	93840640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651_93846706_93854013_93854155_93856633
86382	chr2	-	2785	11	NIC	ENSMUSG00000027466.16	novel	2384	12	NA	NA	5	-500	intron_retention	FALSE	canonical	3	483	junction_1	60.3850974993003	91	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGACGATGGTGGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	152174299	152158753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
86383	chr17	-	1403	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	414	-14	0	14	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	1037	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTGATTCATGGCTTT	6759	False	NA	NA	False	NA	NA	NA	26051921	26049464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
86384	chr2	-	4494	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	-10	-2957	-10	2957	multi-exon	FALSE	canonical	3	49	junction_6	307.891214554751	77	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTCCCAACTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	69036489	69021281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
86386	chr9	-	497	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	3	-1	3	1	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	5662	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGACTGGTCTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	61821821	61820564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_61820804_61821169_61821245_61821638
86387	chr6	-	3086	6	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	-3636	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3563.73455801635	179	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122713771	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709789_122712399_122712570_122713537
86388	chrX	-	2217	6	NIC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	794	junction_1	114.796167183404	8	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGGGGTATGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	72965512	72960480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72964977_72965361
86389	chr12	+	1513	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2510	-2	809	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	317	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	9257	False	NA	NA	False	NA	NA	NA	100165785	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
86390	chr11	+	2028	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	-32	2131	-32	-2131	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	1933	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGGCTCCTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	54988908	55001724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
86391	chr6	-	3567	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-55	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2858.84094695735	171	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8990	False	NA	NA	False	NA	NA	NA	122719404	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706303_122706378_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86392	chr2	+	1829	2	FSM	ENSMUSG00000086454.8	ENSMUST00000127237.2	707	2	-277	-845	-2	63	multi-exon	FALSE	canonical	3	577	junction_1	0	776	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATCTTGAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	104389526	104399240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_104390321_104398205
86393	chr5	-	2759	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	34	3	9	-3	multi-exon	FALSE	canonical	3	1613	junction_7	125.046431376509	1905	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTGACCGTCATGCACC	NA	False	NA	NA	False	NA	NA	NA	117527078	117516170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
86394	chr3	-	931	2	Genic_Genomic	ENSMUSG00000047676.7	novel	885	1	NA	NA	-78	79	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAAATGATAGCTAT	NA	False	NA	NA	False	NA	NA	NA	149779257	149778215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_149778913_149779023
86395	chr5	-	2377	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	-9	-1	-9	1	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	1415	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGCTTGTCTTTCTGGC	10012	False	NA	NA	False	NA	NA	NA	134668210	134648729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
86396	chr15	-	1328	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	7	0	1	0	multi-exon	FALSE	canonical	3	182	junction_10	87.2147349935778	1434	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8926	False	NA	NA	False	NA	NA	NA	75801595	75796531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
86397	chr9	+	4503	9	FSM	ENSMUSG00000059183.13_ENSMUSG00000111722.2	ENSMUST00000074792.7	2042	9	6	-2467	0	2467	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	418	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCAGCTGTTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	65343069	65362803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
86399	SIRV5	+	2584	17	NIC	SIRV5A	novel	2029	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	1024	junction_16	2662.85700658147	23337	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	1000	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858_10992_11311
86400	chr7	+	3492	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	-2802	1021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	493	1823	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCTTGTTCAGGATTGT	566	False	NA	NA	False	NA	NA	NA	44462709	44481257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44462735_44465787_44465908_44477910
86401	chr12	+	1738	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	45	410	45	395	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTATCTTGAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	24758284	24763735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
86402	chrM	+	2609	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1027	0	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	3	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	-3	True	NA	22	True	NA	NA	NA	1093	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
86403	chr9	+	689	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	579	3	-2	-3	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120401158	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
86404	chr6	+	3554	10	Antisense	novelGene_ENSMUSG00000107066.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	81	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTGACCGAGTCGATAG	8810	False	NA	NA	False	NA	NA	NA	122704783	122778329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707100_122709301_122709432_122709728_122709831_122712378_122712570_122713537_122713701_122714016_122714265_122716796_122716953_122717346_122717441_122774763_122774831_122778242
86405	chr10	-	4418	10	NNC	ENSMUSG00000025353.6	novel	1573	4	NA	NA	3	12409	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	344.771887370458	3695	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAAAAGCGCTTAGCC	NA	False	NA	NA	False	NA	NA	NA	128657472	128641361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128641551_128642034_128643489_128649905_128650014_128650434_128650553_128652578_128652739_128652823_128652928_128653067_128654885_128655822_128655975_128656129_128656384_128657410
86406	chr9	+	2006	8	NNC	ENSMUSG00000032478.15	novel	719	7	NA	NA	0	1425	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	213.89497709037	88	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTAGTCGATACATGCT	NA	False	NA	NA	False	NA	NA	NA	109661853	109673609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519_109672274_109672961
86407	chr12	-	1068	2	Genic_Genomic	ENSMUSG00000113431.2	novel	390	1	NA	NA	-108	4652	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATAGCCGGGCATAGTG	540	False	NA	NA	False	NA	NA	NA	83667951	83662801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_83662983_83667064
86408	chr1	-	4113	4	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	9	816	intron_retention	FALSE	canonical	3	1366	junction_2	499.33845124213	509	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAGTCTCTCGTGAGATC	2347	False	NA	NA	False	NA	NA	NA	93729619	93719481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93720666_93722447_93722646_93726101_93728633_93729419
86409	chr4	+	11564	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	-7	8676	multi-exon	FALSE	non_canonical	0	0	junction_1	60.6760269539262	368	165	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGATATTTTCCCTCTTG	NA	False	NA	NA	False	NA	NA	NA	147216487	147426867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147393100_147393194_147395015_147395147_147396696_147396862_147409202_147409335_147413438_147413566_147415724_147415863_147416194_147418073_147418146_147418681_147418831
86410	chr8	+	740	2	NIC	ENSMUSG00000031762.8	novel	511	3	NA	NA	12	-6	intron_retention	FALSE	canonical	3	13494	junction_1	0	362	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTAATTCAGCTTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	94899303	94900186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_94899821_94899963
86411	chr4	+	1606	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	48	1332	-31	0	multi-exon	FALSE	canonical	3	141	junction_4	16.5753974809925	757	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATCTCCCTCCTTTCAT	-17	True	NA	NA	False	NA	NA	NA	45018630	45032360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
86412	chr12	+	610	6	Antisense	novelGene_ENSMUSG00000061477.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGCTTCACCCTGAGG	5835	False	NA	NA	False	NA	NA	NA	28681084	28685648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_28681191_28681620_28681774_28683766_28683832_28684207_28684351_28685413_28685486_28685577
86413	chr12	+	2094	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	42	57	42	-57	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	12662	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
86414	chr18	-	6406	36	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	-28	35102	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	443.126799009042	3272	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAATGACGGCTTGGTGC	NA	False	NA	NA	False	NA	NA	NA	10030169	9957963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9958246_9959096_9959170_9959252_9959316_9960485_9960553_9962372_9962492_9963262_9963311_9963821_9963917_9968748_9968832_9970252_9970328_9975597_9975706_9977844_9977977_9984431_9984533_9986286_9986354_9986550_9986602_9986688_9986760_9987067_9987166_9987598_9987662_9989687_9989775_9992127_9992276_9992831_9992908_9993320_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
86415	chr8	-	2922	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	156	-911	156	911	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	26	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAATCCTGGGAATTATAG	NA	False	NA	NA	False	NA	NA	NA	85620390	85612110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
86416	chr14	-	2331	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	6	-451	0	3	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	212	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAAAAGCTTTCTCAC	NA	False	NA	NA	False	NA	NA	NA	55959714	55953330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
86418	chr5	+	4551	11	Antisense	novelGene_ENSMUSG00002075648.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1804	84	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAGGAGGAGGGGGCGTG	NA	False	NA	NA	False	NA	NA	NA	92199661	92285608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_92202913_92203242_92203364_92204128_92204256_92205825_92205930_92212183_92212365_92213610_92213714_92214350_92214441_92216182_92216357_92218214_92218296_92221016_92221138_92285410
86419	chr11	-	5573	30	NNC	ENSMUSG00000020526.13	novel	998	5	NA	NA	8	30583	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	131.720581284354	1692	22	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGCGGAGCACTGCAAC	NA	False	NA	NA	False	NA	NA	NA	84807184	84771192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_84771335_84771611_84772591_84773409_84773551_84776024_84776164_84776493_84776643_84778876_84778992_84782899_84783034_84784149_84784218_84785372_84785477_84786091_84786189_84786301_84786379_84787944_84788037_84788373_84788545_84790200_84790275_84791019_84791142_84791297_84791412_84791665_84791851_84792179_84792328_84792923_84793038_84793984_84794053_84796364_84796467_84798055_84798228_84798330_84798459_84799040_84799132_84800079_84800378_84801216_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
86420	chrM	-	2557	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	9935	False	3673	59	True	NA	NA	NA	3650	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_3600
86421	chr13	-	2148	7	NNC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-62	-4	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_6	337.911436457674	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCACCTTCAGAACCGAGT	NA	False	NA	NA	False	NA	NA	NA	34089215	34063803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34084186_34089090
86422	chr8	+	4030	2	FSM	ENSMUSG00000031818.13	ENSMUST00000181026.2	438	2	-3592	0	1224	0	multi-exon	FALSE	canonical	3	9369	junction_1	0	242	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	121396298	121400946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121400092_121400709
86423	chr7	+	2145	11	Antisense	novelGene_ENSMUSG00000030521.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1142	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGCGAGCCGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	64026327	64041966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_64026552_64026914_64027143_64028484_64028594_64030677_64030789_64032638_64032776_64034048_64034118_64035426_64035569_64037196_64037365_64038612_64038772_64039194_64039880_64041853
86424	chr5	+	5045	35	NNC	ENSMUSG00000059447.14	novel	2048	16	NA	NA	-35818	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.104281092248	2226	16	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGTTCGTAGTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	30324427	30389583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30324958_30325041_30325189_30325685_30325799_30326333_30326531_30327146_30327214_30327616_30327762_30328607_30328691_30331560_30331734_30333796_30333932_30334817_30334929_30337237_30337294_30339054_30339177_30339977_30340102_30345947_30346047_30347713_30347837_30349156_30349296_30350232_30350364_30352340_30352415_30352977_30353019_30359878_30360381_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
86425	chrM	+	1563	2	Genic_Genomic	ENSMUSG00000064356.1_ENSMUSG00000064359.1_ENSMUSG00000064358.1	novel	784	1	NA	NA	0	1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-11	True	NA	NA	False	NA	NA	NA	7765	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_7864_7926
86426	chr7	-	2132	1	Genic_Genomic	ENSMUSG00000045948.9	novel	NA	NA	NA	NA	-2	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1692	False	NA	NA	False	NA	NA	NA	28441197	28439065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_28439100_28441200
86427	chr8	-	4937	6	Antisense	novelGene_ENSMUSG00000031985.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	62	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACCAAAGCAAAACCAAAC	NA	False	NA	NA	False	NA	NA	NA	125616791	125607466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_125610336_125611701_125611783_125612532_125612679_125613425_125613517_125613589_125614558_125616009
86428	chr12	-	2750	12	ISM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	11582	-924	11361	924	3prime_fragment	FALSE	canonical	3	824	junction_2	105.083516569182	6	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAATGTGAAGGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	54830906	54792209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799
86429	chr19	+	1181	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	-57	3	10	-2	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	334	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATATGCCTGGCTCCTTCC	5956	False	NA	NA	False	NA	NA	NA	8848966	8853025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
86430	chr11	+	2217	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	10	3	10	-3	multi-exon	FALSE	canonical	3	862	junction_16	81.0315439264927	1	61	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTTAAGATGGATGTTTC	NA	False	NA	NA	False	NA	NA	NA	115455269	115474808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
86431	chr17	+	3470	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	-79	0	-44	0	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	120	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1368	False	NA	NA	False	NA	NA	NA	56611268	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
86432	chr7	-	1488	5	Intergenic	novelGene_2963	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	948	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGAAGGTGAGCCGAGGC	5338	False	NA	NA	False	NA	NA	NA	45533152	45522302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_45522523_45523179_45523282_45523464_45523620_45530917_45531175_45532398
86433	chr1	-	7204	33	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	39	1201	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	353.588212506353	38	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGATGGAATAGTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	71692281	71642054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71643745_71643915_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
86434	chr6	-	3279	7	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	-4091	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3361.3320978776	139	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122714226	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709821_122712377_122712570_122713537_122713701_122714016
86435	chr15	+	1135	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	-284	0	-284	0	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	21	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	76787993	76790514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
86436	chr8	-	1255	5	Antisense	novelGene_ENSMUSG00000054717.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTGCTGCGAGCGCTGC	NA	False	NA	NA	False	NA	NA	NA	57967523	57965043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_57965280_57965608_57965781_57966093_57966242_57966323_57966497_57966997
86437	chrM	-	1680	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCAGGATACCGCGGCCG	1	True	NA	7	True	NA	NA	NA	3702	2022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2000_3700
86438	chr1	+	1385	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATATAATGATGGCTAC	NA	False	NA	NA	False	NA	NA	NA	24652267	24653652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652300_24653700
86439	chr11	-	1848	9	NIC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	-1	0	intron_retention	FALSE	canonical	3	16996	junction_6	1796.68985567905	47	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113073	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33111226_33111547_33111628_33112921
86440	chr13	+	3053	4	FSM	ENSMUSG00000058900.6	ENSMUST00000021997.8	2591	4	8	-470	8	470	multi-exon	FALSE	canonical	1	3	junction_1	10.6144555520604	18568	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAATTTAAAATAAACTGT	NA	False	NA	NA	False	NA	NA	NA	67321253	67332578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_67321318_67324511_67324639_67325128_67325225_67329812
86441	chrM	-	2617	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	730	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	9986	False	NA	-1	True	NA	NA	NA	3710	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_3700
86442	chr16	-	1037	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	48	0	-38	0	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	38	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	7181	False	NA	NA	False	NA	NA	NA	18066548	18057647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
86443	chr19	-	1899	6	FSM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	51	-2	47	2	multi-exon	FALSE	canonical	3	184	junction_4	26.9102211064867	22	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGTGTGTTAACAAAGGG	NA	False	NA	NA	False	NA	NA	NA	53378958	53367824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
86444	chr4	-	5151	6	Fusion	ENSMUSG00000080059.5_ENSMUSG00000059423.14	novel	509	5	NA	NA	-52	50	multi-exon	FALSE	non_canonical	0	0	junction_1	23.549097647256	197	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGCATTTTTCAATTTTT	3889	False	NA	NA	False	NA	NA	NA	147932875	147906183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147908316_147908538_147909382_147909556_147911404_147912866_147912928_147913126_147913254_147932734
86446	chr11	+	3983	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	-234	-838	-234	838	multi-exon	FALSE	canonical	3	864	junction_12	97.3847042006336	1845	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTCAAGAGGGAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	3913740	3930842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
86447	chr6	-	4820	6	ISM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	4039	-1	3779	1	intron_retention	FALSE	canonical	3	8407	junction_1	438.682755530691	96	141	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122715442	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537
86448	chr14	-	3287	13	NIC	ENSMUSG00000040472.16	novel	2153	15	NA	NA	4	-3	intron_retention	FALSE	canonical	3	103	junction_12	128.875801538622	36	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTAAGAAAAGAAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	55959655	55953336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956989_55957080_55957164_55957252_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
86449	chr6	-	2420	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	140	-4	140	4	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	8	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGGATTTGAATCTTAA	8625	False	NA	NA	False	NA	NA	NA	145021770	144944879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
86450	chr10	-	3107	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	9	-519	9	477	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	1488	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTGTTTGCCCCCTGCAG	5207	False	NA	NA	False	NA	NA	NA	62322575	62290536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
86451	chr11	-	3349	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	27	-1665	27	1665	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	1456	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCTGGCCCCCAATCCCC	NA	False	NA	NA	False	NA	NA	NA	70537857	70533356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
86452	chrM	+	2611	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1029	0	1029	mono-exon	FALSE	NA	NA	NA	NA	NA	141	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAATATGTCTGATAAAA	-3	True	NA	22	True	NA	NA	NA	1093	3704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
86453	chr2	+	1532	3	NIC	ENSMUSG00000037938.5	novel	1325	4	NA	NA	-24	-33	intron_retention	FALSE	canonical	3	695	junction_1	18	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCGGAAAGCTATGGCT	3905	False	NA	NA	False	NA	NA	NA	128971699	128976021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_128972239_128972320_128972487_128975194
86454	chr11	+	518	5	ISM	ENSMUSG00000020372.16	ENSMUST00000125166.2	637	6	302	-15	302	0	3prime_fragment	FALSE	canonical	3	5433	junction_4	565.573602637181	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48694280	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
86455	chr3	+	5514	21	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	-2	167	intron_retention	FALSE	non_canonical	0	0	junction_1	382.037625764793	2	74	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGATGATTTTAATGCTA	NA	False	NA	NA	False	NA	NA	NA	151916116	151941638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916170_151916295_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
86456	chr11	-	5568	2	Intergenic	novelGene_2328	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	769	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57451297	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450383_57450476
86457	chr17	-	2291	12	Fusion	ENSMUSG00000036775.14_ENSMUSG00000024177.10	novel	2224	9	NA	NA	16	0	multi-exon	FALSE	non_canonical	0	0	junction_9	91.7646108347488	2281	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGCTTGTGTTTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	26314431	26300181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937_26309047_26312832_26312935_26313110_26313245_26314338
86458	chr11	+	3180	10	Antisense	novelGene_ENSMUSG00000017677.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10077	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACAAGATGGCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	79130573	79145497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_79131295_79131517_79131622_79132420_79132534_79132808_79132979_79133320_79134404_79135289_79135389_79136994_79137127_79139215_79139486_79141806_79141976_79145178
86459	chr5	+	925	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	923	275	-5	0	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	38	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121343466	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
86462	chr13	-	4719	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	4	4610	4	-4610	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	3054	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCCATGTTCTTTACAA	5850	False	NA	NA	False	NA	NA	NA	38178189	38159986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
86463	chr6	-	4713	8	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6270	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAAAAGCGCCTGCTTCA	7592	False	NA	NA	False	NA	NA	NA	67264382	67244030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67244391_67248178_67248330_67248867_67249012_67249122_67249213_67249802_67249921_67254742_67254921_67258629_67258804_67260884
86464	chr15	+	2050	5	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	1118	intron_retention	FALSE	canonical	3	5295	junction_1	2521.41096412306	5	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCTCTGGTGTAATAGC	NA	False	NA	NA	False	NA	NA	NA	76788284	76791632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788310_76788502_76788881_76789017_76789237_76790055_76790172_76790320
86465	chr13	-	4692	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	47	4594	-13	-4594	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	2571	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACATGTGGCAGTGTGT	5893	False	NA	NA	False	NA	NA	NA	38178146	38159970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
86466	chr2	-	4519	5	Antisense	novelGene_ENSMUSG00000064585.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	149	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAAAACCGCAGTGTCTGC	4411	False	NA	NA	False	NA	NA	NA	158226760	158217598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_158217807_158217998_158218246_158218912_158218991_158222688_158222777_158222862
86467	chrX	-	10420	7	Antisense	novelGene_ENSMUSG00000073245.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2329	240	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTATGGCACTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	34820344	34409111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_34409537_34412073_34414449_34444850_34444920_34589930_34591222_34591440_34592255_34740536_34745927_34820288
86468	chr14	+	3845	16	NNC	ENSMUSG00000021918.11	novel	4245	15	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	16.4343813053272	5	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATTTTCACTTATGATT	NA	False	NA	NA	False	NA	NA	NA	30673414	30710756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889_30686032_30692119_30692522_30696171_30696316_30697179_30697330_30697717_30697785_30699402_30699537_30701946_30702036_30704270_30704474_30706300_30706435_30709068_30709627_30709923
86469	chr2	-	1077	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	89	0	6	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9593	False	NA	NA	False	NA	NA	NA	10085232	10060840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
86470	chr5	+	1319	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	-9	-22	9	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	14	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGCCTTTATATTCCTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
86471	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1037	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
86472	chr4	-	2085	2	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	31	-5	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	252	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTCGGTTCTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	127224606	127219032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220806_127224294
86473	chr11	+	3022	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	-212	7	-21	-7	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	1242	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGGCTTCAGCTGATTAA	NA	False	NA	NA	False	NA	NA	NA	76297756	76307111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
86474	chr6	-	2893	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-43	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3777.93291232123	298	98	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	9002	False	NA	NA	False	NA	NA	NA	122719392	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706158_122706891_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713541_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86475	chr13	-	747	2	Intergenic	novelGene_1353	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1029	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATGAATTAGTTAATTTA	NA	False	NA	NA	False	NA	NA	NA	45023556	44902827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_44903178_45023159
86476	chr15	+	2026	15	FSM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	166	16	166	-16	multi-exon	FALSE	canonical	3	11	junction_10	3.76408917893011	51	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAACATAAAATAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	102059126	102071888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102059148_102059540_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
86477	chr2	+	1938	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-2	71	intron_retention	FALSE	canonical	3	37	junction_2	4	65	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAGAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	104389526	104399248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104390321_104397520_104397622_104398205
86478	chr6	+	3053	7	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	153	116	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACAGCCCGAAGCCCAGC	8810	False	NA	NA	False	NA	NA	NA	122704783	122719475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707100_122708350_122708556_122709328_122709432_122709728_122709833_122712383_122712481_122717354_122717435_122719327
86479	chr8	+	1184	5	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	431.436264122524	135	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	NA	False	NA	NA	NA	86026228	86034700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86026622_86029990_86030081_86031837_86031951_86032845_86032948_86034214
86480	chr6	-	614	2	Genic_Genomic	ENSMUSG00000084291.4	novel	348	1	NA	NA	-1321	63	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4155	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	146550407	146548675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_146549103_146550220
86481	chr4	+	3862	4	ISM	ENSMUSG00000039852.18	ENSMUST00000105680.9	6503	17	128750	-690	-123	686	3prime_fragment	FALSE	canonical	3	133	junction_2	13.4742552876052	4	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTCCAAAAAAATTACAGTTA	NA	False	NA	NA	False	NA	NA	NA	150701599	150707109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_150701937_150702862_150703010_150703481_150703663_150703912
86482	chrX	+	2344	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	30	7	30	-7	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	1998	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCACACCTTGCTTGCT	1219	False	NA	NA	False	NA	NA	NA	7765625	7774583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
86483	chr6	+	2124	5	NNC	ENSMUSG00000012396.13	novel	2011	5	NA	NA	-22	-4	at_least_one_novel_splicesite	FALSE	canonical	3	1086	junction_1	1448.71328685147	68	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGGTCTTATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	122684501	122691588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684568_122684675_122684893_122688496_122688763_122689587_122689675_122690100
86484	chr2	-	2217	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	57	-362	-17	362	multi-exon	FALSE	canonical	3	238	junction_1	30.5	975	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTTGTGAGCCAATCAC	NA	False	NA	NA	False	NA	NA	NA	84557637	84553103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84554562_84555872_84556501_84557506
86485	chr5	+	1033	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	145	1199	12	-1199	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	94	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGTTTAGAATCAGAATAAA	487	False	NA	NA	False	NA	NA	NA	129097277	129100188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
86486	chr4	-	1788	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-59	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	5222	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2554	False	NA	NA	False	NA	NA	NA	129229101	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203675_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
86487	chr16	+	2767	6	NNC	ENSMUSG00000022679.14	novel	2315	5	NA	NA	2	63306	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	84.5978723136699	694	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAAATTTCTTGAGCAA	493	False	NA	NA	False	NA	NA	NA	13758530	13830789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_13758888_13759983_13760038_13762529_13762601_13764421_13764452_13764615_13766850_13830768
86488	chrM	+	1620	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-4	-71	-4	71	mono-exon	FALSE	NA	NA	NA	NA	NA	18	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-3	True	NA	NA	False	NA	NA	NA	5323	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
86489	chr11	+	4291	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	-151	218	-151	-218	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	28654	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332029	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
86490	chr4	+	2909	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	18	333	18	320	multi-exon	FALSE	canonical	3	565	junction_3	58.8236535946402	1596	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCATACCCTGTTCCCCA	594	False	NA	NA	False	NA	NA	NA	118965925	118994847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
86491	chr13	-	2840	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	60	0	15	0	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	5216	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	74498339	74470372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
86492	chr10	-	1146	1	Antisense	novelGene_ENSMUSG00000069622.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3158	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTTCTTTTTAAATGCAA	NA	False	NA	NA	False	NA	NA	NA	59232582	59231436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_59231400_59232600
86493	chr17	+	2117	15	Fusion	ENSMUSG00000023904.11_ENSMUSG00000043782.10	novel	597	4	NA	NA	2492	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	129.814801363563	16	27	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTTCTCAGCAGCCTT	6713	False	NA	NA	False	NA	NA	NA	23887591	23894198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_23887859_23887947_23888087_23888172_23888278_23888359_23888427_23888499_23888553_23888821_23888924_23889009_23889084_23889168_23889226_23889406_23889527_23889614_23889691_23889771_23889884_23892489_23892865_23892942_23893043_23893520_23893650_23893857
86495	chr15	+	1811	12	NIC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	-6	15	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	304.280970635544	25	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTACATTAAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80832698	80853335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80832902_80836397_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
86496	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	143	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
86497	chr14	+	1700	6	Antisense	novelGene_ENSMUSG00000022018.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1957	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCACCCGCCGGCTACTC	1379	False	NA	NA	False	NA	NA	NA	79523344	79539075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_79523353_79525411_79526558_79527681_79527747_79529110_79529217_79538152_79538341_79538888
86498	chr17	+	2125	14	Fusion	ENSMUSG00000023904.11_ENSMUSG00000043782.10	novel	1941	10	NA	NA	2492	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	134.699182709047	2509	13	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTTCTCAGCAGCCTT	6713	False	NA	NA	False	NA	NA	NA	23887591	23894198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_23887859_23887947_23888087_23888172_23888279_23888359_23888427_23888499_23888553_23888821_23888924_23889009_23889084_23889168_23889226_23889406_23889527_23889614_23889691_23889771_23889844_23892520_23893043_23893520_23893650_23893857
86499	chr16	+	4360	6	Genic_Genomic	ENSMUSG00000086083.2	novel	869	2	NA	NA	-12333	-274	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1455	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGTCCCGCCTCTTCCGC	NA	False	NA	NA	False	NA	NA	NA	33774275	33787408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_33777305_33779421_33779536_33780544_33780721_33781936_33782607_33784137_33784298_33787197
86500	chrUn_MU069435v1	+	494	1	Intergenic	novelGene_4731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACGACCTGCTTCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	0	494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_500
86501	chr17	-	2567	14	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	7066	-1	6870	1	3prime_fragment	FALSE	canonical	3	561	junction_9	76.5542697242796	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAGCCTTTTGTTTGAAG	9250	False	NA	NA	False	NA	NA	NA	45737597	45702808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445
86502	chr6	-	3707	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3013.30654281765	8	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707090_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86503	chr6	-	3719	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2889.91339525924	9	127	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717442_122719334
86504	chr6	-	3815	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	3712.93264280407	4317	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717068_122717167_122717346_122717440_122719334
86505	chr6	+	843	2	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256153	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_148256829_148256928
86506	chr5	+	2853	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	-184	3	-184	-3	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	707	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGCCTTTTGTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	124717018	124735740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
86508	chr6	-	3709	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3007.53043764038	41	136	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712562_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86509	chrX	+	447	5	FSM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	34	2	-1	-2	multi-exon	FALSE	canonical	3	10431	junction_4	1336.12412877696	1150	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGAAGTTTTTCTCCTG	NA	False	NA	NA	False	NA	NA	NA	133486436	133488803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488685
86510	chr8	-	4047	15	NIC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	32	-20	intron_retention	FALSE	canonical	3	3119	junction_11	188.979752721755	479	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	26337690	26306043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_26307537_26307631_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
86512	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	364	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	56	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
86513	chr6	+	4143	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	-6	-1854	-6	1854	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	413	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGCAACTTCCCAGTAACA	NA	False	NA	NA	False	NA	NA	NA	106746120	106761289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
86514	chr11	+	3536	14	Antisense	novelGene_ENSMUSG00000020368.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACCAGCAGCAAACACAGT	NA	False	NA	NA	False	NA	NA	NA	50185314	50202567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_50187157_50187875_50187965_50188100_50188222_50188943_50189060_50189953_50190179_50191731_50191884_50192585_50192698_50195151_50195343_50198296_50198489_50199135_50199216_50199611_50199756_50201197_50201260_50201621_50201697_50202432
86515	chr9	+	2163	9	FSM	ENSMUSG00000032369.14	ENSMUST00000093801.10	2302	9	423	-284	-169	284	multi-exon	FALSE	canonical	1	104	junction_4	78.1135991681346	1384	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGGGTTTGGGCTTCAGT	NA	False	NA	NA	False	NA	NA	NA	92132225	92154615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_92132414_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
86516	chr4	+	6066	13	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	35030	multi-exon	TRUE	non_canonical	0	0	junction_2	36.3749761359219	82	66	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATCACTTGCTATATCAAA	NA	False	NA	NA	False	NA	NA	NA	147216501	147704685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216568_147216646_147216818_147575087_147575217_147578832_147578927_147639766_147639863_147661528_147661587_147665698_147665826_147667290_147667445_147667687_147672013_147678310_147678463_147678638_147678812_147681532_147681770_147704401
86517	chr5	-	2063	4	ISM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	14033	155	13845	1	3prime_fragment	FALSE	canonical	3	761	junction_3	646.395303888332	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGCTTGTCTTTCTGGC	3246	False	NA	NA	False	NA	NA	NA	134654311	134648729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219
86518	chr6	-	3658	9	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4100.47884208357	46494	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708570_122709702_122709820_122712364_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86519	chr1	-	2905	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	13	-11	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	1034.79961828366	1	43	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATATCTCACGAGCTTTG	2351	False	NA	NA	False	NA	NA	NA	93729615	93720308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722574_93726101_93726193_93726497_93728633_93729419
86520	chr7	-	3735	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	134	-69	134	69	multi-exon	FALSE	canonical	3	1219	junction_2	45	6096	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTCAAACTCAAAGACCT	NA	False	NA	NA	False	NA	NA	NA	127592905	127588810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_127592138_127592286_127592344_127592554
86521	chr6	+	637	1	Antisense	novelGene_ENSMUSG00000084319.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCACAGCCCGTCCGCGA	NA	False	NA	NA	False	NA	NA	NA	99854571	99855208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_99854600_99855200
86522	chr18	+	1690	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	29	28	29	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	16	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCGCAGAAGTCCACCAAAA	NA	False	NA	NA	False	NA	NA	NA	48179742	48181432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181400
86523	chr2	+	2529	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	122	1021	-3	-5	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	2994	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATTCTCAGGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	34662103	34666538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
86524	chr7	-	3858	7	Antisense	novelGene_ENSMUSG00000033685.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCTGCGAACCCGCGCC	NA	False	NA	NA	False	NA	NA	NA	100148769	100142567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100142671_100143418_100146153_100146298_100146513_100147282_100147478_100147552_100147654_100147939_100148123_100148441
86525	chr14	-	1869	13	Antisense	novelGene_ENSMUSG00000093156.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	85	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGCTGTGGCCAAGGAGA	1727	False	NA	NA	False	NA	NA	NA	30295575	30280682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_30280794_30281706_30281821_30282541_30282640_30287442_30287636_30288897_30289016_30290118_30290313_30290929_30291096_30291911_30292068_30292154_30292289_30292917_30293002_30293106_30293201_30294162_30294286_30295291
86526	chr17	-	544	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	16	0	-1	0	multi-exon	FALSE	canonical	3	20050	junction_4	1387.25833481007	96	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	34174635	34170972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
86527	chr18	+	4769	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	-7	-307	-7	307	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	337	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTGTTTACATAAAGAG	8957	False	NA	NA	False	NA	NA	NA	32970270	33000954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
86528	chr1	+	2544	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	74	227	11	-227	multi-exon	FALSE	canonical	3	576	junction_4	38.3577313661217	34245	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTGTGGTTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	71596382	71618563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
86529	chr14	-	1566	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	10	1812	10	276	multi-exon	TRUE	canonical	3	62	junction_9	170.895289578151	1247	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATTTGTAATTTAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	51162340	51152862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
86530	chr1	-	1031	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-51126	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1054.3829664785	4287	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCACTGCTCAGGTCTT	3154	False	NA	NA	False	NA	NA	NA	4907088	4846602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854274_4906041_4906056_4906883
86531	chr12	+	2131	7	Antisense	novelGene_ENSMUSG00000061477.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3318	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGGCTCTCGCGAGAACG	4354	False	NA	NA	False	NA	NA	NA	28679603	28685880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_28681191_28681620_28681774_28683766_28683832_28684207_28684351_28685413_28685486_28685577_28685662_28685853
86532	chr3	-	504	1	NIC	ENSMUSG00000058174.8	novel	1265	3	NA	NA	9107	-393	mono-exon	FALSE	NA	NA	NA	NA	NA	65	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAAGCATTCCACCATG	NA	False	NA	NA	False	NA	NA	NA	37769371	37768867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_37768900_37769400
86533	chr12	+	4353	13	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-452	0	intron_retention	FALSE	canonical	3	11	junction_1	285.98381607279	1	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	2000	False	NA	NA	False	NA	NA	NA	109602821	109628150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109604361_109608998_109609087_109609847_109609896_109611695_109611766_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
86534	chr18	+	2924	10	NNC	ENSMUSG00000042660.9	novel	1619	7	NA	NA	44	2424	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	152.942819945362	857	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTCCACGCCCCCTCAA	NA	False	NA	NA	False	NA	NA	NA	36893316	36899287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144_36897543_36898150_36898610_36898944_36899064_36899195
86535	chr17	-	3017	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	0	10	0	-10	multi-exon	FALSE	canonical	3	561	junction_9	75.0022221893014	111	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAATTGAGTGTAGCCT	2184	False	NA	NA	False	NA	NA	NA	45744663	45702819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
86536	chr1	+	1206	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	14	-4	-14	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	3946	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTGTCTCAAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
86537	chr2	+	1856	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	16	5	0	1	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	2069	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	130116365	130121228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
86538	chrM	+	1619	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-3	-71	-3	71	mono-exon	FALSE	NA	NA	NA	NA	NA	52	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-2	True	NA	NA	False	NA	NA	NA	5324	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
86539	chr16	-	563	1	Intergenic	novelGene_3689	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212038	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
86540	chrX	+	3403	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	-147	-694	-147	694	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	1474	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGAGTTGCTGTGGTC	390	False	NA	NA	False	NA	NA	NA	74425857	74440759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
86541	chr6	-	3302	19	NNC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-2409	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	254.65641340616	3484	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACATGTTACAGTCAAAAG	NA	False	NA	NA	False	NA	NA	NA	83034663	83028265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901_83031812_83031889_83032027_83032106_83032261_83032486_83032670_83032876_83032951_83033046_83033125_83033350_83033414_83033520_83033624_83033737_83033859_83033957_83034073_83034251_83034374_83034476
86542	chr7	-	583	6	ISM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	1560	0	254	5prime_fragment	FALSE	canonical	3	13120	junction_5	588.142703771797	21	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGATCATGCTGCCC	8422	False	NA	NA	False	NA	NA	NA	99132858	99128662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
86543	chr4	+	2050	8	Antisense	novelGene_ENSMUSG00000028494.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1369	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGAGCCAGCCGGGGCG	NA	False	NA	NA	False	NA	NA	NA	86574808	86588467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_86575642_86576817_86576955_86578327_86578507_86580170_86580453_86582667_86582749_86586603_86586800_86586886_86586942_86588180
86544	chr4	-	5123	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	124	-1118	-74	1118	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	1549	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAAATATCCATAAAGCAC	NA	False	NA	NA	False	NA	NA	NA	131939490	131911104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
86545	chr10	-	2859	14	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	-32	3719	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	296.022048595097	1455	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGGCGGGGCGGGCGCCG	NA	False	NA	NA	False	NA	NA	NA	126906165	126899429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_126899627_126900086_126900322_126900452_126900588_126900701_126900871_126901022_126901134_126901821_126901872_126901967_126902109_126902799_126902832_126902947_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
86546	chrM	-	1570	2	Genic_Genomic	ENSMUSG00000064350.1_ENSMUSG00000064352.1	novel	69	1	NA	NA	-5	-64	multi-exon	FALSE	non_canonical	0	0	junction_1	0	607	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGCTGAGTAAGCATT	9245	False	NA	NA	False	NA	NA	NA	6943	5323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_6165_6214
86547	chr9	-	2166	6	ISM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	-3	4	-3	0	intron_retention	FALSE	canonical	3	898	junction_5	102.766531516832	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	6328	False	NA	NA	False	NA	NA	NA	57065564	57062322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058
86548	chr3	+	8164	17	Fusion	ENSMUSG00000027823.10_ENSMUSG00000097724.3	novel	2669	2	NA	NA	1180	-44	multi-exon	FALSE	canonical	2	3	junction_1	399.314524959649	15	110	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTCCACTTTGTGGAAT	NA	False	NA	NA	False	NA	NA	NA	63872235	63929956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_63872330_63874687_63874902_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
86549	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	262	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
86550	chr6	-	3714	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	229	16	6	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	25	108	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8919	False	NA	NA	False	NA	NA	NA	122719475	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86551	chr5	+	1793	7	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGTGGACGCGACTCGACA	NA	False	NA	NA	False	NA	NA	NA	142888871	142892458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889140_142889216_142889697_142889821_142890015_142890106_142890540_142890993_142891234_142891320_142891448_142892406
86552	chr14	+	1435	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	78	0	-10	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	7552	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	NA	NA	NA	14296825	14303777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
86553	chrM	-	842	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGTTAGGGCCTTTTCGT	9986	False	NA	-1	True	NA	NA	NA	3710	2868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2900_3700
86555	chr15	+	1444	9	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	1	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	5304.9576753731	1	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAATGGAATGACAACTG	NA	False	NA	NA	False	NA	NA	NA	103148881	103153378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149602_103150431_103150541_103150632_103150671_103150768_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
86556	chr14	+	4868	19	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	67	48196	intron_retention	FALSE	non_canonical	0	0	junction_9	273.534072628784	65	11	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGGGTCCCCGAACTTTA	NA	False	NA	NA	False	NA	NA	NA	54598364	54655326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774_54607344_54607549_54607734_54610396_54610546_54611297_54611398_54611672_54611775_54612004_54612128_54615221_54615367_54616451_54616577_54645957_54646511_54654049_54654226_54655203
86557	chr6	-	1658	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13263	16	3694	1	mono-exon	FALSE	NA	NA	NA	NA	NA	24	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122706441	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706400
86558	chr16	-	4076	12	NNC	ENSMUSG00000034064.15	novel	2758	11	NA	NA	-10	1838	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	288.946075783603	1400	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATTGGGAATATTTTT	6220	False	NA	NA	False	NA	NA	NA	38370630	38343660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_38344603_38345132_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
86559	chr17	-	901	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	-4	800	-4	3	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCTTTATTCGGTTTGCT	5448	False	NA	NA	False	NA	NA	NA	66408558	66386432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
86560	chr1	+	1129	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8722.60083060093	19	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457531_86457766
86561	chr6	-	3571	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3787.86021521386	18	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708412_122708459_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714231_122716862_122716953_122717346_122717440_122719334
86562	chr13	-	2376	7	NNC	ENSMUSG00000052180.16	novel	654	5	NA	NA	-36	12237	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	330.457132873035	16	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGGGAAAACACAGACAGCT	NA	False	NA	NA	False	NA	NA	NA	34089189	34051561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34053094_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
86563	chrX	-	6347	19	NNC	ENSMUSG00000038344.15	novel	3715	11	NA	NA	92	17344	intron_retention	FALSE	non_canonical	0	0	junction_1	86.0085590056142	32	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAAATTTGGAGAAAGCCC	NA	False	NA	NA	False	NA	NA	NA	161612358	161544570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_161544714_161551845_161551992_161552754_161552932_161554046_161554165_161555200_161555362_161556191_161556317_161556434_161556513_161557546_161557624_161558729_161558789_161560766_161560878_161561342_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
86564	chr17	+	2590	14	Fusion	ENSMUSG00000023904.11_ENSMUSG00000043782.10	novel	597	4	NA	NA	2493	289	intron_retention	FALSE	non_canonical	0	0	junction_1	133.684562048793	803	9	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGGGAGATGGTTGTTT	6714	False	NA	NA	False	NA	NA	NA	23887592	23894490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_23887859_23887947_23888087_23888172_23888279_23888359_23888427_23888499_23888553_23888821_23888924_23889009_23889084_23889168_23889527_23889614_23889691_23889771_23889884_23892489_23892865_23892942_23893043_23893520_23893650_23893857
86565	chr2	+	1103	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	-16	0	-16	0	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	1394	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2406	False	NA	NA	False	NA	NA	NA	150751497	150773200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
86566	chr7	+	1322	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	-37	27	-37	-27	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	560	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAATACAGTTTATCTTA	74	False	NA	NA	False	NA	NA	NA	126248443	126272070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
86567	chr18	-	6146	36	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	226	34766	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	436.937085089525	15	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAAAGAATAGCGCCAG	285	False	NA	NA	False	NA	NA	NA	10029796	9958299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9958420_9959095_9959170_9959252_9959316_9960485_9960553_9962372_9962492_9963262_9963311_9963821_9963917_9968748_9968832_9970252_9970328_9975597_9975706_9977844_9977977_9984431_9984533_9986286_9986354_9986550_9986602_9986688_9986760_9987067_9987166_9987598_9987662_9989687_9989775_9992127_9992276_9992831_9992908_9993320_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029638
86568	chr4	+	2052	4	FSM	ENSMUSG00000028936.16	ENSMUST00000139685.8	2051	4	-5	4	-5	-3	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	89	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGTCACTGTGCAAGG	NA	False	NA	NA	False	NA	NA	NA	152410318	152418524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
86569	chrX	+	2387	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	1047.41860927499	78	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491941_100491981
86570	chr14	+	1125	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-179	691	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAAGATATT	NA	False	NA	NA	False	NA	NA	NA	13669258	13670464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669888_13669968
86571	chr8	-	4021	5	NIC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	1530	1850	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	289.113299590316	85	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCATTTTCCCAGTTACCT	NA	False	NA	NA	False	NA	NA	NA	70974210	70964195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70973137
86572	chr5	+	374	1	Intergenic	novelGene_918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCACCCTGTTCCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
86573	chr3	-	892	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	71	-78	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGAGGATTGGTCAGCA	NA	False	NA	NA	False	NA	NA	NA	149779257	149778365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778400_149779300
86574	chr6	+	3662	10	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1865	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCACAGCCCGAAGCCCAGC	8810	False	NA	NA	False	NA	NA	NA	122704783	122719475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708555_122709328_122709432_122709728_122709831_122712378_122712570_122713537_122713701_122714016_122714201_122716788_122716953_122717346_122717435_122719327
86575	chr15	-	1123	7	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-9	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	720.64818431434	261	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTGTGTGTATTTA	NA	False	NA	NA	False	NA	NA	NA	51728859	51649958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651449_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
86576	chr11	+	1056	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	31	-336	-2	336	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	97917780	97921654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
86577	chr15	+	2989	9	NIC	ENSMUSG00000009585.19	novel	2459	9	NA	NA	53	356	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	239.760785732363	33	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACAAACAAGTCTTC	7954	False	NA	NA	False	NA	NA	NA	79776311	79792993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776641_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
86578	chr1	+	1157	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9249.42810244083	5	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454447	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456900_86456967_86457177_86457287_86457662
86579	chr3	-	1210	7	Antisense	novelGene_ENSMUSG00000027939.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9178	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCAAGGAGAAAAGGAGCC	NA	False	NA	NA	False	NA	NA	NA	90031942	90011530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_90011662_90014202_90014342_90022360_90022492_90025837_90025931_90027170_90027323_90029991_90030125_90031511
86580	chrM	-	927	1	Antisense	novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS_novelGene_ENSMUSG00000064358.1_AS_novelGene_ENSMUSG00000064355.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGTGAAATTAAATTATTGA	7557	False	NA	NA	False	NA	NA	NA	8631	7704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7700_8600
86581	chr4	-	979	5	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	-206	-663	intron_retention	FALSE	canonical	1	10	junction_1	183.570831016259	441	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGAGTCAAGATCCCTT	9446	False	NA	NA	False	NA	NA	NA	155975872	155973981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155974038_155974125_155974364_155974955_155975127_155975209_155975360_155975508
86582	chr11	+	2076	7	FSM	ENSMUSG00000042569.14	ENSMUST00000042281.14	1553	7	14	-537	14	537	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	1132	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATCAAGCCACCACTATC	NA	False	NA	NA	False	NA	NA	NA	60721470	60749786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
86583	chr1	-	566	1	Intergenic	novelGene_387	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTACGAAATGTTGCTGA	NA	False	NA	NA	False	NA	NA	NA	72750390	72749824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_72749800_72750400
86584	chr7	+	1045	1	Intergenic	novelGene_3001	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAACAGAACTGTGTGGTA	NA	False	NA	NA	False	NA	NA	NA	97076034	97077079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_97076000_97077100
86585	chr2	+	5148	8	NNC	ENSMUSG00000037523.14	novel	887	4	NA	NA	-1300	2054	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	82.0569737363956	2147	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCATTGATTTGACAGGCA	5960	False	NA	NA	False	NA	NA	NA	131074682	131091999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_131074811_131075113_131075274_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
86586	chr3	-	5470	12	Intergenic	novelGene_3116	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTCAAAATGGTGGGCGC	NA	False	NA	NA	False	NA	NA	NA	41571386	41510460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41510550_41535629_41535708_41543368_41543456_41546115_41546273_41548198_41548389_41551048_41551260_41554454_41554631_41555807_41555916_41558901_41559426_41564236_41564354_41567555_41569023_41569120
86587	chr6	+	3730	11	Antisense	novelGene_ENSMUSG00000107066.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	222	94	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTTGACCGAGTCGATAG	8810	False	NA	NA	False	NA	NA	NA	122704783	122778329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708555_122709328_122709432_122709728_122709831_122712378_122712572_122713546_122713701_122714016_122714257_122716788_122716953_122717346_122717435_122774755_122774841_122778247
86588	chr9	-	4322	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	123	-2621	8	2621	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	26204	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTGTTAGGTAAAAGGTT	NA	False	NA	NA	False	NA	NA	NA	89996704	89971096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
86589	chr17	-	9041	12	Fusion	ENSMUSG00000116560.2_ENSMUSG00000116868.2	novel	985	8	NA	NA	1149	-10753	multi-exon	FALSE	non_canonical	0	0	junction_8	17.4687442248545	3646	61	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTCATGGAGTCAGGAAT	NA	False	NA	NA	False	NA	NA	NA	6848953	6789942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_6791227_6792929_6793075_6795963_6796109_6803306_6803476_6809624_6809760_6812795_6812921_6815627_6815707_6817281_6817358_6819117_6819159_6831826_6831892_6841677_6841897_6842395
86590	chr6	-	3576	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	-35	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3012.29495793162	30298	101	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	9010	False	NA	NA	False	NA	NA	NA	122719384	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714240_122716820_122716953_122717346_122717440_122719334
86591	chr17	-	1434	3	ISM	ENSMUSG00000062591.6	ENSMUST00000071135.6	2228	4	1441	470	1441	-470	3prime_fragment	TRUE	canonical	0	0	junction_2	0.5	3	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTAAACCCCACTGTCTC	NA	False	NA	NA	False	NA	NA	NA	57393341	57387535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_57388748_57392991_57393103_57393230
86592	chr6	-	3665	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2858.84094695735	1418	81	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714106_122714157_122714258_122716791_122716953_122717346_122717440_122719334
86593	chr4	+	2512	11	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	-2668	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	276.881996525596	7	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGAAACTTGGTTTCAA	1247	False	NA	NA	False	NA	NA	NA	118963239	118994518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118963361_118966117_118966170_118977584_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
86594	chr6	+	3486	8	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	106107	92	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCCGAAGCCCAGCCTA	8810	False	NA	NA	False	NA	NA	NA	122704783	122719478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708530_122712383_122712570_122713537_122713701_122714016_122714257_122716788_122716953_122717346_122717435_122719327
86595	chr17	-	315	4	FSM	ENSMUSG00000067288.14	ENSMUST00000173844.8	382	4	67	0	-1	0	multi-exon	FALSE	canonical	3	11527	junction_1	4307.03060897722	50	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	NA	False	NA	NA	NA	34043469	34042023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_34042091_34042166_34042305_34043272_34043321_34043407
86596	chr13	+	6617	31	NNC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	5	61889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	296.241500581311	2426	19	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGAGGGGGCGGGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	107083639	107158621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162_107098729_107100844_107100984_107101524_107101627_107105144_107105296_107111001_107111071_107111878_107111989_107113162_107113376_107113499_107113639_107114533_107114626_107115481_107115544_107115984_107116074_107119029_107119195_107119699_107119759_107121573_107121667_107123775_107123878_107124460_107124584_107126545_107126601_107129670_107129790_107130357_107130455_107158521
86597	chr17	+	5477	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3261	-367	-3261	367	mono-exon	FALSE	NA	NA	NA	NA	NA	24	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCATCCCCGCCGCGGCTC	NA	False	NA	NA	False	NA	NA	NA	40153982	40159459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40154000_40159500
86598	chr9	-	5328	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	-245	784	-245	-784	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	2498	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGATCTTTTTTGCATCTTT	NA	False	NA	NA	False	NA	NA	NA	36679220	36641423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
86599	chr7	-	2442	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	-157	0	-143	0	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	2603	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	143102986	143067315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
86600	chr11	+	4835	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-115	-3158	3	2476	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	4035	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGATTTGGAGGCCT	NA	False	NA	NA	False	NA	NA	NA	80274107	80289550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
86601	chr5	-	967	5	ISM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	500	0	42	0	intron_retention	FALSE	canonical	3	8565	junction_1	2401.58003978631	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548287	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730
86602	chr15	+	1807	10	ISM	ENSMUSG00000023010.16	ENSMUST00000161250.8	1148	11	6523	-566	-1576	409	3prime_fragment	FALSE	canonical	3	119	junction_1	553.986963344405	1019	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTCTTGGGGGGAGGA	2144	False	NA	NA	False	NA	NA	NA	99297389	99307081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_99297753_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
86603	chr2	+	1439	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	192	2850	-5	124	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	5360	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAGAGCACATGGTATAT	4159	False	NA	NA	False	NA	NA	NA	127429333	127445899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
86604	chrX	+	6532	21	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	5	50270	intron_retention	FALSE	non_canonical	0	0	junction_1	1506.66566961619	10	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCGGCTGGACCAGGGGCA	NA	False	NA	NA	False	NA	NA	NA	161543402	161612358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543466_161543637_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343_161564417_161565226_161565323_161567319_161567411_161569612_161570675_161573607_161573807_161580637_161580807_161590480_161590572_161594286_161594592_161612234
86606	chrX	-	270	2	Antisense	novelGene_ENSMUSG00000031231.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACCACTTGCTGAATG	4590	False	NA	NA	False	NA	NA	NA	105065523	105063211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_105063308_105065349
86607	chr4	+	2768	12	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	153	12	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGCGTGGGAGTCGCGCAA	261	False	NA	NA	False	NA	NA	NA	137469060	137523505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882_137486043_137523102
86608	chr18	+	1290	8	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	-130	-53	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1923.40111176392	1	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCGGGAATTTAATGCAGG	NA	False	NA	NA	False	NA	NA	NA	77866524	77870302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77866583_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
86609	chr1	+	2644	12	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	-2355	1300	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	393.636762544413	1330	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATAGTATGTTTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	15873514	15915576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15873599_15875706_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144_15913994_15915164
86610	chr8	-	770	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	19	4	19	-4	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	53	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCTAGTATGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	13940249	13934797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
86611	chrM	-	3110	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1218	-1373	-1218	1373	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCTCAGCCAATGAAAAG	900	False	NA	60	True	NA	NA	NA	15288	12178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12200_15300
86612	chr6	-	3371	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	31	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3913.03014473186	36974	96	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8944	False	NA	NA	False	NA	NA	NA	122719450	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712377_122712570_122713537_122713590_122714227_122714258_122716791_122716953_122717346_122717440_122719334
86613	chr9	+	792	3	NNC	ENSMUSG00000063856.9	novel	653	3	NA	NA	8	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	4434	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTGTGTCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	108216449	108217541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108216758_108216975_108217028_108217109
86614	chr17	-	3523	5	Antisense	novelGene_ENSMUSG00000006818.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCGTGCTGAGAGGAACA	NA	False	NA	NA	False	NA	NA	NA	13237001	13227078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_13227273_13229405_13229522_13232317_13232498_13233910_13234845_13234902
86615	chrM	-	816	1	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAATGCCGTATGGACCA	-2	True	NA	4	True	NA	NA	NA	3705	2889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2900_3700
86616	chr19	+	869	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	55	5	-3	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4924	False	NA	NA	False	NA	NA	NA	9960064	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
86617	chr2	-	3267	5	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-21	110597	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	137.305316721531	6155	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATAAATAAATCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	176898235	176764648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176764841_176883287_176886072_176887228_176887290_176887494_176887622_176898132
86619	chr8	+	5312	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-122	343	intron_retention	FALSE	canonical	3	434	junction_2	317.198183317622	584	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGTGAAAGACCCACAACG	NA	False	NA	NA	False	NA	NA	NA	20697862	20727609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
86620	chr13	+	2235	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	18	2050	-2	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	117745	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588080	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
86621	chrX	-	2136	13	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	4	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCGCCGGAAACGAGCCGA	NA	False	NA	NA	False	NA	NA	NA	100492192	100473294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100473367_100474096_100474157_100480812_100480984_100483092_100483286_100485120_100485420_100486531_100486632_100486900_100487097_100487881_100487966_100488291_100488396_100488899_100488939_100489719_100489834_100491198_100491635_100491924
86622	chr3	-	2277	20	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	263	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTGGAGTAGTCGGCC	NA	False	NA	NA	False	NA	NA	NA	151938408	151916251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916336_151919611_151919703_151921226_151921268_151923045_151923084_151923469_151923520_151923609_151923684_151923848_151923907_151925318_151925482_151925567_151925667_151925770_151925875_151926101_151926203_151926320_151926422_151926901_151927044_151927718_151927881_151928464_151928618_151928922_151929001_151931714_151931854_151933806_151933882_151937512_151937658_151938029
86623	chr6	+	7819	14	Fusion	ENSMUSG00000092386.2_ENSMUSG00000056666.14	novel	3027	11	NA	NA	-22	558	multi-exon	FALSE	non_canonical	0	0	junction_11	203.565699671728	1470	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGAGAGCGGCGCAC	NA	False	NA	NA	False	NA	NA	NA	72575435	72593731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224_72589094_72591054_72591140_72592504_72593432_72593658
86624	chrX	+	2428	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	134	0	-46	0	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	11012	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
86625	chr14	+	1389	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	89	3265	37	795	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACCCAAGGGCTTTGAC	NA	False	NA	NA	False	NA	NA	NA	63359999	63380107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
86626	chr7	-	2240	8	NIC	ENSMUSG00000030689.16	novel	1973	7	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	76	junction_7	292.908775936141	2396	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACATGTTTTGTGCTTGG	9932	False	NA	NA	False	NA	NA	NA	126461534	126450757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
86627	chr6	-	3310	7	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	-4123	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3403.05443274453	290	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122714258	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707090_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016
86628	chr15	+	2739	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	326	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGGGCGGCGGCGGC	NA	False	NA	NA	False	NA	NA	NA	36771013	36793763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793724
86629	chr13	+	2169	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	84	2050	-1	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	71	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588146	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
86630	chr13	-	3549	12	NNC	ENSMUSG00000021711.18	novel	1689	13	NA	NA	-5	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	239.911863982044	1185	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGATCTGAGTCAACTA	NA	False	NA	NA	False	NA	NA	NA	104314982	104278660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286698_104290799_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
86631	chr13	+	4166	21	NNC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	0	73362	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	679.595017271316	2542	15	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTCCTTCGGGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	43551865	43633935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237_43557166_43560087_43560202_43565888_43566041_43567456_43567581_43569800_43569945_43573049_43573243_43574686_43574795_43576025_43576140_43578505_43578693_43583924_43583944_43588286_43588464_43589572_43589619_43615187_43615298_43633885
86632	chr16	-	4506	2	Antisense	novelGene_ENSMUSG00000075269.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAGAGCAAGAAGCAAGA	7932	False	NA	NA	False	NA	NA	NA	32019158	31967173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_31967747_32015225
86633	chr15	-	1849	5	NNC	ENSMUSG00000039828.8	novel	1130	4	NA	NA	-10077	501	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	184.472897738394	2	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATTTTCTTATTGCTA	NA	False	NA	NA	False	NA	NA	NA	8138770	8121209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602_8128877_8138735
86634	chrM	+	2011	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-187	0	187	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGCACACAAATTAAAAAAA	-4	True	NA	4	True	NA	NA	NA	11741	13752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13800
86635	chr5	-	4556	26	Fusion	ENSMUSG00000107283.4_ENSMUSG00000106864.4	novel	2328	9	NA	NA	16	-2	multi-exon	FALSE	canonical	0	0	junction_25	187.976364471707	4346	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAACAAGAATTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	31337237	31298008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534_31311635_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31336961
86636	chr13	-	1982	17	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	4	444	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	76.8251871133419	53	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAACTGTCTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	100629083	100596281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
86637	chr6	-	3700	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	243	16	20	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	7	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8933	False	NA	NA	False	NA	NA	NA	122719461	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86638	chr7	+	11410	48	NNC	ENSMUSG00000006649.18	novel	752	9	NA	NA	-23319	5	intron_retention	FALSE	non_canonical	0	0	junction_1	25.376780467031	128	99	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATTTCTGTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	30134420	30186653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30134814_30134897_30135048_30135173_30135232_30135395_30135471_30136195_30136320_30137602_30137705_30139361_30139491_30139570_30139728_30140479_30140549_30141060_30141198_30141594_30141786_30141904_30142038_30142221_30142336_30142516_30142652_30143744_30143886_30149260_30149327_30149801_30149902_30150224_30150326_30152105_30152324_30152476_30152577_30152834_30152967_30153057_30153189_30153438_30153585_30153659_30153771_30153933_30154085_30154596_30154758_30154889_30155038_30155839_30155994_30156221_30156405_30160018_30162370_30162652_30165285_30165411_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
86639	chr17	+	2075	5	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	858.014677904755	78	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAGAGTTGTGTCTAGA	NA	False	NA	NA	False	NA	NA	NA	29251645	29261867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29260160_29260268_29260357
86640	chr6	+	2149	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	60	2	60	-2	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	6	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTTATCTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	122684586	122691590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
86641	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
86642	chr6	-	1209	3	NNC	ENSMUSG00000063694.6	novel	3123	3	NA	NA	-67	793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2454.5	85	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGATCGTGATCCTTTGA	NA	False	NA	NA	False	NA	NA	NA	50543585	50541423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_50542366_50542571_50542649_50543395
86643	chrM	+	2499	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1100	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3309_3426
86644	chr16	-	4306	22	NIC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	0	652	combination_of_known_junctions	FALSE	canonical	3	68	junction_21	407.127507368682	532	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCTCCCTGGGTCCCAAA	NA	False	NA	NA	False	NA	NA	NA	91443819	91417421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443614
86645	chr13	-	4416	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	-105	4	-105	-4	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	2585	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGTGAGTTGTGTGCT	2734	False	NA	NA	False	NA	NA	NA	55510701	55491649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
86646	chr4	-	2281	5	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	-3	-24	intron_retention	FALSE	canonical	3	293	junction_3	44.5954033505697	2	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAGGAATAAAAGACATAGA	9130	False	NA	NA	False	NA	NA	NA	155976188	155973342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
86647	chr7	+	705	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	1	0	1	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1309	False	NA	NA	False	NA	NA	NA	3707036	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
86648	chr5	+	1653	4	NNC	ENSMUSG00000034211.15	novel	1208	4	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	356.816790835608	88	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTTTTGGCAGCTTGATT	785	False	NA	NA	False	NA	NA	NA	129792591	129795542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129792614_129792747_129793676_129793790_129793931_129794979
86649	chr2	-	2072	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-295	-719	intron_retention	FALSE	non_canonical	0	0	junction_1	302.910694576618	93	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACATAAGCGAACACATACA	NA	False	NA	NA	False	NA	NA	NA	177482424	177474302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177474330_177474581_177476105_177476312_177476440_177482029
86650	chr11	+	1788	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	47	265	3	-265	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	11421	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGCCTCCATCCTTTA	3038	False	NA	NA	False	NA	NA	NA	75623741	75656406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
86651	chr13	-	6013	5	NNC	ENSMUSG00000113260.2	novel	1038	6	NA	NA	-6199	9347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.656383221335	2790	28	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCCAGATAGGAGAGTTA	1631	False	NA	NA	False	NA	NA	NA	65847009	65828079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65832656_65832805_65833936_65840427_65840489_65840688_65840816_65846890
86652	chr2	-	989	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	171	0	4	0	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	2870	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2384	False	NA	NA	False	NA	NA	NA	38533928	38478047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
86653	chr11	+	2017	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-7653	-212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3901.83149302991	2883	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACAGTATTGTTTGTCT	996	False	NA	NA	False	NA	NA	NA	75616041	75656459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75616228_75623751_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
86654	chr10	+	475	1	Intergenic	novelGene_3454	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	577	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGTGTTGTGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	62359042	62359517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_62359000_62359500
86655	chrM	-	1568	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1494	-5	1494	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGATATCTTTGTGATTGG	9245	False	NA	NA	False	NA	NA	NA	6943	5375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5400_6900
86656	chr5	+	1120	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	146	1157	146	-1157	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	322	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	691	False	NA	NA	False	NA	NA	NA	129097481	129100230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
86657	chr13	-	1941	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2380.72947254168	1395	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGTGGTCTTTTTTTT	5118	False	NA	NA	False	NA	NA	NA	58549963	58539763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
86658	chr12	+	2640	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	-273	0	-273	0	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	1371	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	4647	False	NA	NA	False	NA	NA	NA	110451898	110538122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
86659	chr4	+	1702	3	NIC	ENSMUSG00000029003.12	novel	487	2	NA	NA	108	1210	intron_retention	FALSE	non_canonical	0	0	junction_2	343	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCATCTGGGATTTGAGG	NA	False	NA	NA	False	NA	NA	NA	148229354	148231366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_148229654_148229828_148230643_148230777
86660	chr12	-	840	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	39	164	11	-164	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	299	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTCTCAGTGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	81579640	81405797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
86661	chr9	-	750	2	ISM	ENSMUSG00000070283.5	ENSMUST00000194381.2	478	3	351	-327	351	3	3prime_fragment	FALSE	canonical	3	450	junction_1	0	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGATCTGTTTTCAGAA	9211	False	NA	NA	False	NA	NA	NA	108443565	108442732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_108443275_108443357
86662	chr16	-	1003	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	77	5	-9	-5	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	84	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCAGCTGACAAGGCT	7210	False	NA	NA	False	NA	NA	NA	18066519	18057652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
86664	chrX	+	2863	4	Intergenic	novelGene_3973	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	85	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGCGCAACAAAGTACTATA	NA	False	NA	NA	False	NA	NA	NA	89169271	89172564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_89169593_89169697_89170694_89170921_89172278_89172374
86665	chr6	-	3714	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	229	16	6	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	304	93	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8919	False	NA	NA	False	NA	NA	NA	122719475	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86666	chr16	+	3785	27	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	-4	1029	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	351.484057816864	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTTCTTGTTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	48251595	48452292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
86667	chrM	+	651	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	33	0	33	0	mono-exon	FALSE	NA	NA	NA	NA	NA	122	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCACTATGAAGCTAAGAG	7	True	NA	NA	False	NA	NA	NA	7045	7696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7000_7700
86668	SIRV3	-	1293	6	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-966	multi-exon	FALSE	non_canonical	0	0	junction_1	690.830225163897	87	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCAAGTATTTGCTTCTCC	NA	False	NA	NA	False	NA	NA	NA	9943	1966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2054_4676_4769_6057_6334_8755_8976_9189_9299_9434
86669	chr3	+	3859	23	NNC	ENSMUSG00000028034.16	novel	4525	22	NA	NA	-58	-2	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_20	488.968422056675	1539	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATGAGTGTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	151916000	151942461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031_151939340_151940160_151940208_151941104_151941242_151942243
86670	chr8	+	6908	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-8	253	intron_retention	FALSE	non_canonical	0	0	junction_3	487.602461027423	18	49	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTTCCTGCCCTTAGGCC	NA	False	NA	NA	False	NA	NA	NA	19834753	20046141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036156_20037903_20038096_20039783_20040806_20041228
86671	chr5	-	4074	6	NNC	ENSMUSG00000029213.12	novel	520	5	NA	NA	26	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	165.782266844195	56	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCATAGACTCATGGGTA	NA	False	NA	NA	False	NA	NA	NA	72325473	72313919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72323026_72323151_72325305
86672	chr3	+	5487	11	FSM	ENSMUSG00000025764.15	ENSMUST00000168086.7	4790	11	42	-739	-2	-7	multi-exon	FALSE	canonical	3	17	junction_1	235.78218762239	14	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATACATTTTAAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	41519330	41571286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41519439_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
86673	chrX	+	15121	5	Antisense	novelGene_ENSMUSG00002076267.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6151	291	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACAGAGATGGCAAAGTA	NA	False	NA	NA	False	NA	NA	NA	29454368	30144571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_29458957_29803404_29806790_30001208_30002221_30002437_30003127_30139124
86674	chr11	+	1766	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	47	287	3	-287	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	6	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTAAATTAAAAATGCCAAA	3038	False	NA	NA	False	NA	NA	NA	75623741	75656384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
86675	chr8	+	2262	5	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	2957	-2103	intron_retention	FALSE	canonical	0	0	junction_1	1421.07538505176	731	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAATACTTGGTGATGTC	NA	False	NA	NA	False	NA	NA	NA	111777500	111782193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111778025_111778905_111779154_111779822_111779937_111780520_111780844_111781140
86676	chr4	+	4269	4	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078496.10	novel	585	4	NA	NA	-3	-1854	intron_retention	TRUE	non_canonical	0	0	junction_1	7.54247233265651	196	55	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATTGATCATTTTAT	4107	False	NA	NA	False	NA	NA	NA	147314737	147596023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314886_147316807_147316901_147409230_147409235_147591999
86677	chr7	+	3954	14	NNC	ENSMUSG00000030983.5	novel	1244	7	NA	NA	-311	61594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	591.977180513338	7	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACAGCCTCTGCTTCCTG	9042	False	NA	NA	False	NA	NA	NA	133318796	133384468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_133319516_133320832_133321008_133322435_133323128_133323879_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335855_133335936_133336035_133338914_133339163_133344156_133344529_133350569_133350764_133361126_133361642_133384395
86678	chr16	-	2409	10	Antisense	novelGene_ENSMUSG00000065208.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTCCAATCTCCCATCTC	NA	False	NA	-26	True	NA	NA	NA	22932692	22926955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_22927602_22927868_22928005_22928725_22928904_22928983_22929092_22929327_22929472_22929873_22930011_22930249_22930342_22930565_22930645_22931098_22931210_22931914
86679	chr10	+	808	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	70	7	10	-7	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	643	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGACTCAGCAGGTGCT	4982	False	NA	NA	False	NA	NA	NA	127871513	127884495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
86680	chr12	+	615	1	Intergenic	novelGene_4448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTTTAAGTTCTTACCA	2114	False	NA	NA	False	NA	NA	NA	99611319	99611934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_99611300_99611900
86681	chr6	-	3639	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	304	16	-51	1	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	841	122	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8994	False	NA	NA	False	NA	NA	NA	122719400	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86682	chr6	-	3694	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3924.96842167056	152	189	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8916	False	NA	NA	False	NA	NA	NA	122719478	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712600_122713577_122713688_122714016_122714258_122716791_122716953_122717346_122717440_122719334
86683	chr15	+	1543	10	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	-1	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4239.91136641578	57	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTCTTGAATGGAATGAC	NA	False	NA	NA	False	NA	NA	NA	103148879	103153373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150394_103150671_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
86684	chr4	+	1524	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	22	-603	-8	603	multi-exon	FALSE	canonical	3	289	junction_1	0	1159	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGAAATAAAATGGTCT	NA	False	NA	NA	False	NA	NA	NA	125990437	125992980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_125990603_125991621
86685	chr17	-	4156	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	-33	10	-33	-10	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	1299	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGGGTGCCCATCTTCTA	8642	False	NA	NA	False	NA	NA	NA	24470416	24441181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
86686	chr9	+	936	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	903	-1	-93	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAGCCACCACTGAGT	NA	False	NA	NA	False	NA	NA	NA	119956853	119960532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
86687	chr19	+	6270	22	FSM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	0	-402	0	402	multi-exon	TRUE	canonical	3	1554	junction_5	143.18806117019	1242	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTTATAAATCAAGATGTAA	NA	False	NA	NA	False	NA	NA	NA	38919358	38959897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
86688	chr7	+	4472	5	FSM	ENSMUSG00000037640.16	ENSMUST00000108336.8	5896	5	0	1424	0	-1424	multi-exon	FALSE	canonical	3	74	junction_1	38.9422649572415	856	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATATGTTTTAGAATCTT	NA	False	NA	NA	False	NA	NA	NA	27430813	27451703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592
86689	chr6	-	3182	11	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4303.24471068053	74	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	8919	False	NA	NA	False	NA	NA	NA	122719475	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122706421_122706935_122707100_122708351_122708556_122709336_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714248_122716791_122716953_122717346_122717440_122719334
86690	chr6	+	4106	7	NIC	ENSMUSG00000029993.17	novel	950	8	NA	NA	2	0	intron_retention	FALSE	canonical	3	2373	junction_6	227.491880196977	42	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	NA	False	NA	NA	NA	86986219	87005441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86986942_86989888_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
86692	chr16	+	7738	18	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	12636	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.386932729652	3	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	2157	False	NA	NA	False	NA	NA	NA	48312630	48451263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48318379_48319090_48319190_48320456_48320528_48322667_48322733_48330559_48330708_48378738_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
86693	chr2	+	4270	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	4	-68	4	68	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	216	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGGATTTGAACTTAATA	NA	False	NA	NA	False	NA	NA	NA	152068762	152123840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
86694	chr7	+	4280	19	Fusion	ENSMUSG00000035674.14_ENSMUSG00000008373.17	novel	3144	14	NA	NA	2707	-86	multi-exon	TRUE	non_canonical	0	0	junction_1	402.377088050071	2182	55	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTCCAGGACATTGAGG	3206	False	NA	NA	False	NA	NA	NA	3623322	3645398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_3623474_3623745_3623986_3624063_3624134_3627599_3627667_3631824_3632088_3632551_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
86695	chr3	+	1523	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-23	-12	-23	12	mono-exon	FALSE	NA	NA	NA	NA	NA	568	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATGTTCAACATGCTTA	5417	False	NA	NA	False	NA	NA	NA	54388835	54390358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54388800_54390400
86696	SIRV1	-	1660	8	NNC	SIRV1A	novel	1561	6	NA	NA	0	-325	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2408.1446580049	16	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAAGGACTAGTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	11643	1331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444_10651_10916_11243_11403
86697	chr13	-	3118	6	Antisense	novelGene_ENSMUSG00000074868.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAACACGCCTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	62261772	61952091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_61952219_62194993_62195119_62195303_62195366_62254559_62254683_62254871_62254941_62259160
86698	chr14	-	2810	8	NIC	ENSMUSG00000060373.16	novel	1691	9	NA	NA	-220	-3	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	103	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGTTAGAAGCTGGTG	8505	False	NA	NA	False	NA	NA	NA	52341705	52311004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
86699	chr6	-	4297	6	ISM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	4562	-1	4302	1	intron_retention	FALSE	canonical	3	8407	junction_1	438.682755530691	21	125	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122714919	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537
86700	chr11	+	2237	20	FSM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	-4	2	-4	-2	multi-exon	FALSE	canonical	3	228	junction_1	27.0805712775824	1240	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTCTGTTTGTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	4845338	4878863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
86701	chr2	+	2168	10	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	2	233	intron_retention	FALSE	non_canonical	0	0	junction_3	3724.86475353116	12	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGCTGGGTCTGAGCAAA	7496	False	NA	NA	False	NA	NA	NA	75489625	75496698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492237_75492451_75492830_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
86702	chr17	-	1399	3	NNC	ENSMUSG00000001525.11	novel	979	3	NA	NA	1185	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAATGGGAATTGGAAA	NA	False	NA	NA	False	NA	NA	NA	36146767	36144834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36144927_36145367_36146579_36146671
86704	chr14	-	3576	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	-1	-662	-1	662	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	1464	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGGCGTGGTGGCGCAT	6343	False	NA	NA	False	NA	NA	NA	66071444	66055824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
86705	chr3	+	2962	7	NNC	ENSMUSG00000027671.15	novel	1112	6	NA	NA	6833	9775	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	53	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACCCACAGTGTCGGTG	6424	False	NA	NA	False	NA	NA	NA	32779548	32790897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_32781867_32782580_32782673_32784225_32784359_32785306_32785408_32787738_32787801_32788259_32788409_32790790
86706	chr6	-	1180	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13741	16	4172	1	mono-exon	FALSE	NA	NA	NA	NA	NA	15970	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122705963	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706000
86707	chr1	+	3908	12	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	290	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	514.797721648878	171	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACGTACTGTGTCTGTGCT	1519	False	NA	NA	False	NA	NA	NA	58432918	58446510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58433272_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
86708	chr5	+	3414	11	FSM	ENSMUSG00000028986.13	ENSMUST00000030841.10	2966	11	-17	-431	-17	424	multi-exon	FALSE	canonical	3	50	junction_4	4.51220566907139	285	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTTAAAAAGTATGTTT	NA	False	NA	NA	False	NA	NA	NA	24305585	24366214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24361887_24362090_24363536_24363635_24364444
86709	chr12	-	1648	11	NIC	ENSMUSG00000021036.11	novel	6710	12	NA	NA	94	-78	combination_of_known_splicesites	FALSE	canonical	3	13	junction_10	171.988517058552	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTCCTCTGTTTGCTA	8904	False	NA	NA	False	NA	NA	NA	87434921	87356490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87434819
86710	chr1	-	830	5	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-50097	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	933.140497192143	8	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCACTGCTCAGGTCTT	4183	False	NA	NA	False	NA	NA	NA	4906059	4846602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854274_4906041
86711	chr18	+	11607	55	NNC	ENSMUSG00000003779.17	novel	3674	19	NA	NA	-24782	18544	intron_retention	TRUE	non_canonical	0	0	junction_1	499.148842059653	2427	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCGTAATGTTCCGAAAAG	NA	False	NA	NA	False	NA	NA	NA	34732883	34784874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34732997_34733033_34735303_34735726_34735832_34736761_34736937_34737649_34737722_34737885_34737977_34738526_34738741_34739471_34739520_34739727_34739821_34740090_34740547_34740829_34741109_34741470_34741679_34742855_34743001_34743460_34743679_34744181_34744322_34746089_34746154_34746267_34746349_34747499_34747626_34747801_34747851_34749717_34749787_34756506_34756605_34757590_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353_34767218_34767445_34767565_34767639_34767719_34769337_34769403_34769757_34769832_34770111_34770232_34770372_34770526_34774147_34774231_34774347_34774446_34774525_34774704_34776851_34776983_34777075_34777188_34778122_34778164_34779957_34780092_34784441_34784514_34784597
86712	chr15	-	3535	12	NNC	ENSMUSG00000033837.6	novel	1365	3	NA	NA	65	5417	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	125.048949093631	1352	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGCTGCAGCTCCTGGGC	NA	False	NA	NA	False	NA	NA	NA	76554083	76547007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76547095_76547171_76547281_76548267_76548379_76548480_76548644_76550226_76550334_76550427_76550548_76550643_76550767_76550855_76550997_76551078_76551330_76551401_76553341_76553428_76553534_76553804
86713	chr19	-	3141	14	Antisense	novelGene_ENSMUSG00000024735.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1408	58	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGCGGGCCACTTCCGG	NA	False	NA	NA	False	NA	NA	NA	10882894	10872756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10872833_10874866_10875021_10875184_10876642_10876732_10876795_10877536_10877579_10877685_10877762_10878052_10878127_10878287_10878396_10879702_10879861_10880062_10880134_10880326_10880411_10880648_10880824_10880999_10881105_10882395
86714	chr2	+	1158	2	Genic_Genomic	ENSMUSG00000082064.4	novel	891	1	NA	NA	-44	1121	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1321	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGGAGCCAGCGGGGCT	9372	False	NA	NA	False	NA	NA	NA	154545684	154547740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_154546666_154547563
86715	chrX	+	2223	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-46	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1047.41860927499	8	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGTGCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491517_100491719
86716	chr17	+	2095	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	478	0	-2	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	192	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTTGTGTCTAGAAG	NA	False	NA	NA	False	NA	NA	NA	29251646	29261869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
86717	chr17	-	1357	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	-173	-1	14	1	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTGTGTTCTGGCGCT	NA	False	NA	NA	False	NA	NA	NA	24388608	24382838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
86718	chr3	+	3846	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	-103	-1239	61	-9	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	765	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACACACTTTGGTCTTA	NA	False	NA	NA	False	NA	NA	NA	135144137	135173950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
86719	chr12	-	903	6	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5398.53196341376	1306	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685899	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28681193_28681622_28681725_28683862_28684352_28685414_28685487_28685578_28685663_28685854
86720	chr15	-	3280	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	-238	2	-238	1	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	2222	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACAGTGAGTCTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	38301188	38294658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
86721	chr2	-	298	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	-31	-96	-31	96	mono-exon	FALSE	NA	NA	NA	NA	NA	39	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	172351642	172351344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_172351300_172351600
86722	chr11	-	2403	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	3	-255	3	255	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	1153	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGCCGCTTTCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	84020423	83969490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
86723	chr8	+	553	4	NNC	ENSMUSG00000087687.4	novel	363	4	NA	NA	86	-2	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	310.762860643861	45	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGCTAGTGCCAAGTG	5724	False	NA	NA	False	NA	NA	NA	3671687	3673370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_3671974_3672341_3672429_3672592_3672626_3673223
86724	chr13	+	748	4	FSM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	183	6	-76	-6	multi-exon	FALSE	canonical	3	13520	junction_1	3048.72640075601	2113	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGACCTGGTCTATAGG	NA	False	NA	NA	False	NA	NA	NA	91071259	91073063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_91071319_91071705_91071866_91072444_91072566_91072655
86725	chr17	+	8057	32	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	-71	74144	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1125.685567038	2191	17	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGGCGGCGGAGGCGGCG	NA	False	NA	NA	False	NA	NA	NA	88282418	88372464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298150_88299602_88299683_88299785_88300246_88300358_88300576_88300688_88301170_88301274_88303461_88303606_88303692_88303774_88304760_88304844_88304939_88305066_88306961_88307052_88308195_88308285_88310178_88310397_88316020_88316157_88316240_88316351_88316437_88316550_88316631_88316739_88318363_88318497_88318720_88318805_88319984_88320114_88321831_88321979_88322826_88322908_88323014_88323143_88372435
86726	chr3	+	1236	5	Antisense	novelGene_ENSMUSG00000036513.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCAAAAAGAAGTTCCGGC	NA	False	NA	NA	False	NA	NA	NA	57553529	57559140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_57554298_57557462_57557643_57558117_57558194_57558841_57558927_57559013
86727	chr6	-	1180	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13741	16	4172	1	mono-exon	FALSE	NA	NA	NA	NA	NA	112	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122705963	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706000
86728	chr11	-	3920	19	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-1	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	113.122257145658	1104	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAACAACTCATTGAG	NA	False	NA	NA	False	NA	NA	NA	79853217	79824790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79852989
86729	chr13	+	1773	7	ISM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	289	-186	44	186	3prime_fragment	FALSE	canonical	3	1367	junction_3	68.3408532447629	1127	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGTACACATTAAAAATGA	NA	False	NA	NA	False	NA	NA	NA	43552154	43556523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
86730	chr15	+	1933	17	Fusion	ENSMUSG00000023048.14_ENSMUSG00000056851.15	novel	3222	14	NA	NA	12	8	multi-exon	FALSE	canonical	2	4	junction_3	177.111502661459	281	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	2417	False	NA	NA	False	NA	NA	NA	102367648	102407324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_+_102367691_102368542_102368582_102368804_102369155_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
86731	chrX	+	2647	18	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-8056	0	intron_retention	FALSE	non_canonical	0	0	junction_1	578.607306577538	25	6	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	72822577	72834432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72822780_72823073_72823132_72823218_72823318_72823584_72823732_72823820_72823921_72824178_72824314_72824503_72824637_72824757_72824818_72825281_72825401_72825615_72826325_72830382_72830540_72830806_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
86732	chr10	-	1633	7	FSM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	-63	-192	-63	192	multi-exon	FALSE	canonical	3	30	junction_5	5.05799696849784	1206	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTGGTGCCCTGGTGTC	4068	False	NA	NA	False	NA	NA	NA	78005679	77997707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77998553_77999230_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
86733	chr3	+	1471	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-1	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	90.812220405626	715	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTTTTTTTTTTTTTTT	7757	False	NA	NA	False	NA	NA	NA	115681830	115722950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722479
86734	chr9	+	1326	6	FSM	ENSMUSG00000032478.15	ENSMUST00000200468.2	865	6	-58	-403	-46	-52	multi-exon	FALSE	canonical	3	493	junction_3	57.3431774494578	103	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGAGTCTCTCTCGGCA	NA	False	NA	NA	False	NA	NA	NA	109662051	109672132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
86735	chr16	+	8662	8	NIC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	64	-514	intron_retention	FALSE	canonical	3	3297	junction_7	344.765107851471	42	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCTTTGTCAAACTTTAG	NA	False	NA	NA	False	NA	NA	NA	84571074	84622302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84618191_84619674
86736	chr13	-	12048	7	Genic_Genomic	ENSMUSG00000113712.2	novel	1289	1	NA	NA	-50543	80884	multi-exon	FALSE	non_canonical	0	0	junction_1	6.04841577054135	377	105	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAATTGGAGTTACTACC	NA	False	NA	NA	False	NA	NA	NA	65960870	65828154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_65832819_65883515_65883716_65904283_65907609_65907773_65911339_65912507_65912569_65912752_65912880_65960764
86737	chr10	+	3525	14	NNC	ENSMUSG00000019897.9	novel	1813	4	NA	NA	-77879	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	207.570990208968	2022	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGAATGGAGTGTAATAG	NA	False	NA	NA	False	NA	NA	NA	105599048	105683687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_105599322_105601079_105601153_105601824_105601897_105615445_105615543_105629200_105629294_105633079_105633180_105659019_105659171_105661857_105662453_105665708_105665816_105668711_105668875_105676932_105677517_105678402_105678710_105681210_105681311_105682877
86738	chr3	+	3000	2	Genic_Genomic	ENSMUSG00000104616.2	novel	463	1	NA	NA	-2373	218	multi-exon	TRUE	non_canonical	0	0	junction_1	0	26	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAACTTTACAGAGTCA	NA	False	NA	NA	False	NA	NA	NA	41437794	41440848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_41438528_41438581
86739	chr2	-	3594	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	-8	-2234	-8	2234	multi-exon	FALSE	canonical	3	811	junction_6	34.6121365997536	2946	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTAGAGTGAAGTAGGTTA	NA	False	NA	NA	False	NA	NA	NA	69036546	69022004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
86740	chr2	-	3430	3	Antisense	novelGene_ENSMUSG00000027313.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	82	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCGGTCGTTCCAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	119186733	119181787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119182117_119182836_119182872_119183667
86741	chr12	+	1801	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1908.10962997413	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763500_24763800
86743	chr9	+	1043	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	796	-1	14	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	9203	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGACTGTACCTGGATT	NA	False	NA	NA	False	NA	NA	NA	119956853	119960639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
86744	chrX	-	983	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-189	-44	189	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGAGACCATTAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	68649895	68648912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68648900_68649900
86745	chr17	-	2158	5	FSM	ENSMUSG00000014769.11	ENSMUST00000231341.2	1970	5	50	-238	9	-2	multi-exon	FALSE	canonical	3	4315	junction_3	328.285698744249	30	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATTTCTTTTTCTTTATC	NA	False	NA	NA	False	NA	NA	NA	15718551	15695982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
86746	chr17	-	1185	1	Intergenic	novelGene_172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTACCTTCTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	40155072	40153887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_40153900_40155100
86747	chr10	+	2757	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	2	410	-2	2	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	799	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	1587	False	NA	NA	False	NA	NA	NA	79690464	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
86748	chr10	-	1122	3	Genic_Genomic	ENSMUSG00000112001.2_ENSMUSG00000112740.2	novel	465	1	NA	NA	-6	60	multi-exon	FALSE	non_canonical	0	0	junction_1	0	358	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACATAATTACGATGACAG	NA	False	NA	NA	False	NA	NA	NA	81654780	81529494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_81529938_81638297_81638465_81654268
86749	chr9	+	2116	17	ISM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	201	5	2	-3	3prime_fragment	FALSE	canonical	3	461	junction_10	116.635047798678	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACATTGTGTGGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	21914514	21925513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
86750	chr4	-	9474	3	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6440	128	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCTAGAAAAGGTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	42231967	41877123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41880988_42207622_42207630_42226364
86751	chr4	+	3761	12	Fusion	ENSMUSG00000050188.9_ENSMUSG00000042608.16	novel	413	3	NA	NA	79	-709	multi-exon	TRUE	canonical	0	0	junction_2	103.69033682274	1043	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGCCTCAGTTTCCCC	NA	False	NA	NA	False	NA	NA	NA	125990531	126034112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_125990603_125991621_125992705_126017508_126017629_126018875_126018962_126019467_126019612_126022611_126022840_126023490_126023544_126028804_126028921_126030562_126030708_126030869_126030990_126031553_126031639_126032602
86752	chr8	+	1282	2	NNC	ENSMUSG00000031669.11	novel	2519	3	NA	NA	9571	-563	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	61	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATCTGGCCTGCAAAGTGT	NA	False	NA	NA	False	NA	NA	NA	96369752	96371125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96370773_96370863
86753	chr7	-	956	2	Genic_Genomic	ENSMUSG00000108737.2	novel	1104	1	NA	NA	-193	74602	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1381	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTCGTTTTTTGAGACA	NA	False	NA	NA	False	NA	NA	NA	33950973	33875074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_33875507_33950449
86754	chrX	+	2351	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-42	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1047.41860927499	60	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473298	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491689_100491756
86755	chr5	+	1043	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	953	-21	2	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	6030	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTGTTAAGCTGTT	NA	False	NA	NA	False	NA	NA	NA	108048416	108055918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
86757	chr11	+	1195	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	126	1	126	-1	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	13	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGATGTCCAGATTGCA	4083	False	NA	NA	False	NA	NA	NA	100210836	100212921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
86758	chr14	-	881	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-24	-65	-24	65	mono-exon	FALSE	NA	NA	NA	NA	NA	46	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTTATATGAGATTGC	NA	False	NA	NA	False	NA	NA	NA	88361268	88360387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_88360400_88361300
86759	chrX	+	10285	10	Intergenic	novelGene_4047	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1495	100	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	122307239	122755357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_122310580_122312117_122312302_122312393_122313933_122413354_122413732_122568221_122568250_122637302_122637915_122641610_122641669_122748475_122752038_122753575_122753951_122755147
86760	chr2	-	1757	5	NNC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	42	-30	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	14.1950695665784	75	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATTCAAATGTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	166349949	166341990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166343270_166344290_166344399_166345246_166345340_166347371_166347507_166349807
86761	chr6	+	2783	8	ISM	ENSMUSG00000013736.17	ENSMUST00000113249.8	1614	9	95	-600	23	-3	3prime_fragment	FALSE	canonical	3	738	junction_7	88.0727899327063	11	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTTTGTCGTTATTTC	NA	False	NA	NA	False	NA	NA	NA	106746196	106759432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
86762	chr2	-	4841	7	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5325	194462	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	239.051888834946	2899	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCACACTCTCTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	176964154	176761984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176762254_176952110_176954416_176955346_176957002_176957085_176957402_176958542_176958604_176958795_176958923_176964046
86763	chrM	-	885	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGTTTGCGTGTATATAT	900	False	NA	60	True	NA	NA	NA	15288	14403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14400_15300
86764	chr8	-	2356	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	1436	0	150	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	2259	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTACTTCAAAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	79547769	79532929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
86765	chr1	+	1022	7	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	1	43	junction_1	1191.17472363303	9	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63215944	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216178_63216303_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
86766	chrM	+	1679	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-301	0	-301	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	405	False	NA	NA	False	NA	NA	NA	9865	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
86767	chr11	+	1164	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	2	-172	-2	multi-exon	FALSE	canonical	3	35417	junction_1	0	652	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
86768	chr6	-	1873	7	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	28	-61	combination_of_known_splicesites	FALSE	canonical	3	57	junction_6	644.566951957324	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAAACGATTAGATTTGT	NA	False	NA	NA	False	NA	NA	NA	124942447	124935436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124942364
86769	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
86770	chr8	+	854	1	FSM	ENSMUSG00000053038.9	ENSMUST00000065243.9	498	1	181	-537	181	537	mono-exon	FALSE	NA	NA	NA	NA	NA	6	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCATGAAAAAAAAAACTTCA	NA	False	NA	NA	False	NA	NA	NA	42700128	42700982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_42700100_42701000
86771	chr19	+	1027	5	NIC	ENSMUSG00000032946.17	novel	573	5	NA	NA	-5	-260	intron_retention	FALSE	canonical	0	0	junction_3	118.986081118759	929	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCGCCTGGCACAGAGT	NA	False	NA	NA	False	NA	NA	NA	6449480	6454107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6449548_6451745_6451894_6452501_6452605_6453053_6453117_6453461
86772	chr11	-	7605	13	NNC	ENSMUSG00000044066.15	novel	4804	7	NA	NA	2	25598	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	47.1625439894367	505	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGCCGCCGGCGAACC	3057	False	NA	NA	False	NA	NA	NA	20199416	20151438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20151653_20165629_20165703_20168812_20168909_20173083_20173178_20174364_20174497_20174645_20175744_20175940_20179482_20180423_20180595_20186005_20186103_20188465_20188589_20189195_20190699_20191885_20192239_20199306
86773	chr11	+	2449	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	754.535489924467	19	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGATGCGCTTGTTGGG	NA	False	NA	NA	False	NA	NA	NA	20151438	20176851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20175743_20176108
86774	chr17	-	1831	10	NNC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	59	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	56.4545047902389	42	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAATAGTGCTTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	26309135	26300187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26300658_26300871_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
86775	chr16	+	3353	10	NNC	ENSMUSG00000072419.6	novel	2447	8	NA	NA	268	1040	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	266.489570824122	32	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATACCTAATAAAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	48124538	48141126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48124570_48125123_48125328_48130639_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139290_48139359
86776	chr17	+	1636	2	FSM	ENSMUSG00000023067.15	ENSMUST00000122348.3	1172	2	650	-1114	650	-31	multi-exon	FALSE	canonical	3	1159	junction_1	0	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGTGCTCAATAAATACT	9428	False	NA	NA	False	NA	NA	NA	29317523	29319665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29317812_29318317
86777	chr11	+	3282	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	-4	intron_retention	FALSE	canonical	0	0	junction_7	1106.70134154387	90	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276771_52276986_52278301_52279258
86778	chr15	-	3125	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	-92	0	-92	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	1315	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	81614296	81588453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
86779	chr11	-	1345	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	412	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
86780	chr15	-	705	5	Antisense	novelGene_ENSMUSG00000003970.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCACGTAGGCGCGCGG	NA	False	NA	NA	False	NA	NA	NA	76790506	76788608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76788649_76788736_76788879_76789015_76789236_76790054_76790172_76790320
86781	chrM	+	740	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	842	0	-842	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATCCACCTATAACTT	-3	True	NA	22	True	NA	NA	NA	1093	1833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_1800
86782	SIRV5	+	4455	18	NNC	SIRV5A	novel	1984	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3656.64025743829	1033	27	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1019	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2067_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
86783	chr1	-	2101	1	Genic_Genomic	ENSMUSG00000100454.2	novel	NA	NA	NA	NA	-973	78	mono-exon	FALSE	NA	NA	NA	NA	NA	305	124	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAGACGAGGCGCAGTCC	NA	False	NA	NA	False	NA	NA	NA	96954263	96952162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_96952200_96954300
86784	chrM	+	6232	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	-2685	-1723	-2685	1723	mono-exon	FALSE	NA	NA	NA	NA	NA	35	75	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	91	False	NA	NA	False	NA	NA	NA	9056	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9100_15300
86785	chr18	+	2111	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	14	85	-14	-85	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	1271	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTGGACTTATGTTTC	NA	False	NA	NA	False	NA	NA	NA	60693821	60705797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
86786	chr2	-	2269	5	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	113	multi-exon	FALSE	canonical	0	0	junction_1	70.7778213849508	8155	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTGCTCTGACCTTGAA	NA	False	NA	NA	False	NA	NA	NA	156681710	156631618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644081_156679742_156679834_156680337_156680457_156681454
86787	chr1	+	1207	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-3	12	-3	-12	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454444	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
86788	chr8	+	316	2	NNC	ENSMUSG00000031762.8	novel	388	3	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCTTGTCTCTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	94899443	94900192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94899495_94899927
86789	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
86790	chr2	-	3677	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5331	2420	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_3	127.14908135291	1445	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGACACCTTGTCAACTTG	NA	False	NA	NA	False	NA	NA	NA	176964160	176954026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_176964046
86791	chr14	-	2444	8	FSM	ENSMUSG00000037824.7	ENSMUST00000224209.2	2477	8	33	0	28	0	multi-exon	FALSE	canonical	3	610	junction_1	25.0591137846786	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTTGGTGATAAATTGA	NA	False	NA	NA	False	NA	NA	NA	40656245	40628403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144
86792	chr1	+	2955	2	FSM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	-94	0	-94	0	multi-exon	FALSE	canonical	3	479	junction_1	0	1264	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTGGCGAGATGGCTCA	6544	False	NA	NA	False	NA	NA	NA	134422291	134436512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_134422548_134433813
86793	chr16	-	715	2	NNC	ENSMUSG00000022677.16	novel	807	2	NA	NA	3341	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	17	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGATGTTGAACTGTAAG	NA	False	NA	NA	False	NA	NA	NA	14131855	14117152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_14117783_14131770
86794	chr11	+	2132	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	-138	2133	-138	-2133	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	636	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGGGCTCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	54988802	55001722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
86795	chr1	-	1625	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-841	-1	-841	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	69	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCTTAGTATAATTAAT	NA	False	NA	NA	False	NA	NA	NA	24653893	24652268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
86796	chrM	+	968	2	Genic_Genomic	ENSMUSG00000064351.1_ENSMUSG00000064353.1	novel	1545	1	NA	NA	550	-68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	36	False	NA	-9	True	NA	NA	NA	5877	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_5886_5983
86797	chr2	+	4123	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	-177	761	-177	-761	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	781	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATCCAAATTGAATCCC	6896	False	NA	NA	False	NA	NA	NA	23046203	23088511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
86798	chr17	+	2418	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	1	628	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40158800_40158857
86799	chr1	-	725	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-40	-31	40	mono-exon	FALSE	NA	NA	NA	NA	NA	27	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
86800	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	48	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
86801	chr19	+	900	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	24	5	24	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	1087	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4893	False	NA	NA	False	NA	NA	NA	9960033	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
86802	chrM	+	1495	3	Genic_Genomic	ENSMUSG00000064342.1_ENSMUSG00000064345.1	novel	1038	1	NA	NA	-531	-1	multi-exon	TRUE	non_canonical	0	0	junction_1	0	40	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	-2	True	NA	-44	True	NA	NA	NA	3174	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3194_3324_4416_4565
86803	chr4	-	2518	2	FSM	ENSMUSG00000051557.16	ENSMUST00000130146.2	462	2	-1	-2055	-1	-135	multi-exon	FALSE	canonical	3	295	junction_1	0	385	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTACCCTGGACATCCCT	9132	False	NA	NA	False	NA	NA	NA	155976186	155973453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155975873_155976087
86804	chr2	+	2861	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	-138	-1973	-38	1706	multi-exon	TRUE	canonical	3	258	junction_1	285.921123544395	1068	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGCTCTCGAGCCCTTTA	3298	False	NA	NA	False	NA	NA	NA	180829001	180832270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
86805	chr7	+	1670	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	-2	146	-2	-146	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	767	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTAAACCACTGAGCCAT	3083	False	NA	NA	False	NA	NA	NA	44711877	44727488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
86806	chr12	-	3765	14	Antisense	novelGene_ENSMUSG00000021115.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTTACGCTTGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	106043681	105976422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_105976546_106002796_106002962_106009093_106009151_106017192_106017264_106018018_106018105_106022058_106022170_106022279_106022371_106024099_106024234_106024833_106024954_106025874_106025934_106028886_106029065_106036780_106036875_106039877_106039937_106041264
86807	chrX	+	515	1	FSM	ENSMUSG00000059461.8	ENSMUST00000118642.2	387	1	-44	-84	-44	84	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACACTGTCTTAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	161349808	161350323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_161349800_161350300
86808	chr7	+	3930	10	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-584	-7	intron_retention	TRUE	non_canonical	0	0	junction_1	289.227323129134	23334	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACCAAGGGAGACTTGA	NA	False	NA	NA	False	NA	NA	NA	103867415	103884352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103867606_103868035_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
86809	chr5	-	1537	5	NNC	ENSMUSG00000029213.12	novel	3895	5	NA	NA	8	3	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	141.390416931276	54	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGCTTGATTTCAGT	NA	False	NA	NA	False	NA	NA	NA	72325491	72316350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325305
86810	chr11	+	859	3	FSM	ENSMUSG00000001056.4	ENSMUST00000001083.4	825	3	-26	-8	10	8	multi-exon	FALSE	canonical	3	5400	junction_2	19.5	30	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGTGTGTGGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	51510571	51514264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51510979_51513311_51513418_51513918
86813	chr9	+	1139	6	Fusion	ENSMUSG00000110919.2_ENSMUSG00000111423.2	novel	348	3	NA	NA	-48	458	multi-exon	FALSE	non_canonical	0	0	junction_3	19858.4526023555	233	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGCGTCGTCATTA	NA	False	NA	NA	False	NA	NA	NA	78152783	78180323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_78152947_78153027_78153212_78153639_78153847_78179231_78179395_78179475_78179660_78180085
86814	chr10	-	10276	14	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-46	3349	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_13	69.1025308025228	7	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATTCATTCATATATATA	2945	False	NA	NA	False	NA	NA	NA	62723149	62645051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62649192_62649302_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62721317_62721843_62722950
86815	chr17	+	2092	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	481	0	-5	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	117	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAGAGAGTTGTGTCTAG	NA	False	NA	NA	False	NA	NA	NA	29251646	29261866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
86817	chr12	+	5530	15	NNC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-826	2	intron_retention	FALSE	canonical	1	2	junction_7	291.258774064212	317	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTGTGAAGTACAATT	1626	False	NA	NA	False	NA	NA	NA	109602447	109628145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109604361_109608998_109609087_109609847_109609896_109611695_109611766_109612280_109613186_109615587_109615677_109616505_109617350_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
86818	chr5	-	3412	10	ISM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	14454	-1278	14291	1278	3prime_fragment	FALSE	canonical	3	561	junction_5	30.794820792697	5	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTGACCTTGTCCAGTC	NA	False	NA	NA	False	NA	NA	NA	34079303	34053981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189
86819	chr17	+	711	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	112	7	0	-1	multi-exon	FALSE	canonical	3	5482	junction_4	1458.64553610533	980	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCAGCCTTGGTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
86820	chr17	+	2758	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	73	-586	22	586	multi-exon	FALSE	canonical	3	932	junction_1	74.5	10092	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCTTTAAAAGAAAAACAAG	1763	False	NA	NA	False	NA	NA	NA	6130133	6137378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_6130187_6131076_6131150_6134746
86821	chr12	-	684	5	Fusion	ENSMUSG00000049751.7_ENSMUSG00000034892.9	novel	390	3	NA	NA	-12	0	multi-exon	FALSE	non_canonical	0	0	junction_3	11655.4205844319	1375	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	69230799	69204495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_69204596_69205434_69205535_69205770_69205780_69229507_69229940_69230756
86822	chr9	-	2696	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	89	3082	9	0	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	2429	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGACCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	36678886	36643721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
86823	chrX	-	2062	4	FSM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	-67	1	-67	-1	multi-exon	FALSE	canonical	3	68	junction_3	1439.93989072075	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642477	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135642141
86824	chr15	-	3415	6	NNC	ENSMUSG00000022285.18	novel	2285	6	NA	NA	-179	503	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	1669.21123887901	14	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATCAAGGCTTCACGT	1684	False	NA	NA	False	NA	NA	NA	36792837	36770510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36792622
86825	chr12	+	3736	21	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-8	-7	intron_retention	FALSE	canonical	0	0	junction_6	302.176868737499	5	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGACTAAAAAAAGTGTGA	1002	False	NA	NA	False	NA	NA	NA	109572690	109628136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109572778_109573847_109573931_109583607_109583784_109586746_109586835_109591534_109591610_109593481_109593588_109596454_109596626_109604272_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611695_109611766_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
86826	chr17	+	1745	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	6	98	6	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-19	True	NA	NA	NA	40157249	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
86827	chr12	+	458	1	Antisense	novelGene_ENSMUSG00000118552.2_AS_novelGene_ENSMUSG00000045690.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGCTCTTTTTTTTTTT	7831	False	NA	NA	False	NA	NA	NA	75677687	75678145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_75677700_75678100
86828	chr18	-	1470	14	Antisense	novelGene_ENSMUSG00000034484.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAAGAACAATGGTGGAC	NA	False	NA	NA	False	NA	NA	NA	53353577	53322724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_53322843_53327499_53327664_53330924_53330993_53331256_53331300_53332826_53332969_53336110_53336190_53342657_53342734_53343399_53343516_53343770_53343863_53345822_53346029_53349450_53349595_53351171_53351253_53351358_53351438_53353515
86829	chrX	-	3937	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	80	-3015	66	3015	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	670	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACTGCTGAGTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	100266089	100252549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
86830	chr6	-	1180	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13741	16	4172	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1712	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122705963	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706000
86831	chr11	-	1080	9	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6873.85328163905	9115	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113122	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109990_33111144_33111226_33111547_33111628_33112921
86832	chr12	+	2712	9	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	-565	-3	intron_retention	FALSE	canonical	3	549	junction_6	36.7080968588675	3	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAAAAAAAGTGTGAAGTA	5775	False	NA	NA	False	NA	NA	NA	109615473	109628140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
86833	chr8	-	4446	26	FSM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	8	1354	-2	-1354	multi-exon	TRUE	canonical	3	328	junction_14	43.1434815470425	3832	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTTAAAAAAAAAGTTAAAAC	NA	False	NA	NA	False	NA	NA	NA	124675996	124625215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
86834	chr7	+	2870	20	NNC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	4106	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	20.9240812107781	5710	48	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTCCAAGCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	30163255	30186660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30163328_30164890_30165078_30165176_30165307_30165433_30165607_30166560_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177345_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181898_30182006_30186009_30186175_30186263
86835	chr11	-	1352	1	FSM	ENSMUSG00000082087.5	ENSMUST00000122180.2	951	1	-39	-362	-39	362	mono-exon	FALSE	NA	NA	NA	NA	NA	622	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAAATGCTGATG	5817	False	NA	NA	False	NA	NA	NA	40564722	40563370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_40563400_40564700
86836	chr16	+	2767	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	179	junction_10	634.360938267797	60	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
86837	chr17	-	2232	9	FSM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	98	-170	0	-15	multi-exon	FALSE	canonical	3	185	junction_8	21.2485293608758	693	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAATTCAAAAGTACC	3374	False	NA	NA	False	NA	NA	NA	24439727	24434042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
86838	chr6	+	2144	9	NNC	ENSMUSG00000036371.7	novel	665	5	NA	NA	-27	584	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	2621.7263754061	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGTATGAAAGCCCCCAAAA	9618	False	NA	NA	False	NA	NA	NA	67215132	67261879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67215355_67224347_67224486_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
86839	chr7	+	704	3	ISM	ENSMUSG00000046364.15	ENSMUST00000053298.8	760	4	418	0	361	0	3prime_fragment	FALSE	canonical	3	12965	junction_2	2141	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	NA	False	NA	NA	NA	109118837	109120973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_109119201_109119674_109119850_109120807
86840	chr7	+	5783	16	NNC	ENSMUSG00000030983.5	novel	1244	7	NA	NA	-7	38885	intron_retention	FALSE	non_canonical	0	0	junction_6	764.722857569256	406	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTCCCGGCTGCTGCCT	1315	False	NA	-81	True	NA	NA	NA	133311069	133361759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_133311258_133315916_133315992_133316627_133318680_133319327_133319516_133320832_133321008_133322435_133323128_133323879_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335855_133335936_133336035_133338914_133339163_133344156_133344529_133350569_133350764_133361126
86841	chr15	-	2918	8	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	0	503	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1831.85244704782	7	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATCAAGGCTTCACGT	NA	False	NA	NA	False	NA	NA	NA	36794782	36770510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771339_36771915_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793793_36794557
86842	chr7	-	2172	10	FSM	ENSMUSG00000006763.15	ENSMUST00000210628.2	2228	10	-12	68	-9	-68	multi-exon	FALSE	canonical	3	340	junction_4	42.8860102660904	40	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCAGGTGTACATGCAGA	NA	False	NA	NA	False	NA	NA	NA	46360094	46341307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
86843	chr17	+	3250	10	FSM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	-36	6	-36	-6	multi-exon	FALSE	canonical	3	346	junction_3	38.1895855495244	1157	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCATTTTTCTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	17594534	17615155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
86844	chr12	+	2091	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	42	60	42	-60	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCTTGAACTTTCATGG	NA	False	NA	NA	False	NA	NA	NA	24758281	24764085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
86845	chr14	-	4402	9	NNC	ENSMUSG00000021905.15	novel	2953	3	NA	NA	-17449	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	192.478407879949	45	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCAATCCTGAGTGTCTT	5558	False	NA	NA	False	NA	NA	NA	31825135	31804835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31806939_31807366_31808008_31813589_31813715_31814022_31814087_31817319_31817444_31818517_31818584_31821340_31821587_31822940_31823050_31824211
86846	chr16	+	2364	9	NNC	ENSMUSG00000072419.6	novel	2447	8	NA	NA	-29	-46	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	273.386602405824	127	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGGCCACTCACACAGA	NA	False	NA	NA	False	NA	NA	NA	48124241	48140040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48124570_48130639_48130903_48131937_48132074_48134245_48134402_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139290_48139359
86847	chr11	-	5429	20	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	2845	-1	intron_retention	FALSE	canonical	0	0	junction_7	243.561637923841	2375	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGCTGCTTCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	97075862	97050540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058371_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752
86848	chr8	-	1295	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	254	376	0	-376	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATCTCCCTGCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	46664067	46660209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
86849	chr9	+	1223	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1834.17469330365	9	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960319_119960358
86850	chr17	+	942	6	FSM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	54	2	7	-1	multi-exon	FALSE	canonical	3	3280	junction_1	2855.80020309545	13	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTATGTTTTTTTTTGTC	6244	False	NA	NA	False	NA	NA	NA	24939090	24940898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
86851	chr10	-	2765	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	6	959	6	-959	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTCACTGGGACAACA	NA	False	NA	NA	False	NA	NA	NA	77845635	77823739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
86852	chr4	-	7222	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	249	6	0	0	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	1683	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGTTTGTAGTAGTC	NA	False	NA	NA	False	NA	NA	NA	148711227	148696844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
86854	chr19	-	1023	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	46	644	-36	-636	multi-exon	FALSE	canonical	3	1089	junction_1	76.373351955305	2435	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGAGTGTGCGCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	7183635	7176210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
86855	chrX	+	8042	4	Intergenic	novelGene_3911	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2332	90	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGGGATCCCCTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	34409454	34820344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34411642_34413630_34414515_34741013_34745927_34820286
86856	chr18	+	3613	12	Antisense	novelGene_ENSMUSG00000024360.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1550	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATCTCACTTCCTCCGC	1655	False	NA	NA	False	NA	NA	NA	35035837	35065020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35036901_35036959_35038122_35039032_35039183_35040667_35040735_35041096_35041253_35042197_35042326_35042797_35042988_35043167_35043307_35046605_35046744_35047046_35047229_35064621_35064725_35064885
86857	chr7	+	702	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	48	1	0	1	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1312	False	NA	NA	False	NA	NA	NA	3707039	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
86858	chr19	+	5103	22	Fusion	ENSMUSG00000117924.2_ENSMUSG00000010097.16	novel	2326	21	NA	NA	12	1968	intron_retention	FALSE	canonical	3	621	junction_4	71.4940017781173	4178	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAGGAAGACAACCACCCAA	8581	False	NA	NA	False	NA	NA	NA	8734448	8751807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937_8748680_8749411
86859	chr19	+	2091	9	Antisense	novelGene_ENSMUSG00000024640.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7126	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGGATGCAAAGGCAGAGC	NA	False	NA	NA	False	NA	NA	NA	15882493	15902347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_15883515_15884291_15884432_15886664_15886800_15892233_15892398_15894440_15894614_15895569_15895776_15896818_15896891_15898300_15898358_15902224
86860	chr7	-	1991	12	ISM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	13096	10	-7	-1	3prime_fragment	FALSE	canonical	3	502	junction_2	199.836875624856	40	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAACTGAGATTGGTTTT	4828	False	NA	NA	False	NA	NA	NA	143089733	143067325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634
86861	chr9	-	1432	5	FSM	ENSMUSG00000070283.5	ENSMUST00000074208.6	1487	5	-2	57	-2	-57	multi-exon	FALSE	canonical	3	428	junction_3	47.1301389770919	1575	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCAAAGATCAGTTGTCAC	8141	False	NA	NA	False	NA	NA	NA	108444635	108442792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108443275_108443357_108443459_108443539_108443607_108443754_108443951_108444049
86862	chr2	+	1986	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	-295	-779	-295	779	mono-exon	FALSE	NA	NA	NA	NA	NA	1626	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTGGTACCTTCTGAGG	NA	False	NA	NA	False	NA	NA	NA	152528659	152530645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152528700_152530600
86863	chr4	+	4274	22	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	2	2608	intron_retention	FALSE	non_canonical	0	0	junction_17	406.8194761412	1245	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGGGCGGGGCGCTTGCA	9983	False	NA	NA	False	NA	NA	NA	155954025	155976168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076_155973624_155973888_155974051_155974120_155975123_155975200_155975362_155975509_155975696_155975813
86864	chrM	+	1467	2	Genic_Genomic	ENSMUSG00000064357.1_ENSMUSG00000064359.1	novel	681	1	NA	NA	-149	-67	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14313	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	1	True	NA	NA	False	NA	NA	NA	7777	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8800_8946
86865	chr11	+	7511	39	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	-39000	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.3571415685989	1480	14	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTTATTCATTGTGTGG	2840	False	NA	NA	False	NA	NA	NA	78097571	78146310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78098594_78098873_78099062_78099675_78099847_78099929_78100008_78100251_78100362_78102621_78102748_78102908_78103022_78103493_78103734_78104092_78104287_78107028_78107170_78108664_78108812_78109994_78110141_78110707_78110917_78111946_78112075_78112935_78113109_78113176_78113311_78113594_78113731_78113978_78114056_78115190_78115317_78115428_78115561_78116131_78116326_78116486_78116644_78116771_78116926_78117007_78117140_78117504_78117597_78117713_78117865_78119453_78119598_78119779_78119868_78120220_78120337_78120988_78121096_78121755_78122030_78122598_78122688_78122846_78123040_78123330_78123408_78123500_78123660_78124370_78124510_78136373_78136997_78141841_78142039_78145676
86866	chr4	+	4472	3	NIC	ENSMUSG00000028936.16	novel	2051	4	NA	NA	-6	-2	intron_retention	FALSE	canonical	3	4243	junction_1	676.5	54	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTCACTGTGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	152410317	152418525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_152410353_152411937_152414586_152416736
86867	chr13	-	5141	35	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	27	38297	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1159.98978339374	19	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTTACAAAAGCTCCATAA	NA	False	NA	NA	False	NA	NA	NA	97334838	97274541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97274907_97278432_97278519_97279515_97279599_97282152_97282211_97282725_97282824_97285814_97285947_97286837_97286920_97289733_97289823_97291695_97291757_97291926_97292107_97296592_97296674_97297524_97297676_97299359_97299501_97299582_97299683_97301518_97301702_97304769_97304848_97307990_97308130_97309016_97309195_97309443_97309562_97311367_97311552_97312106_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533_97334685_97334740
86868	chr12	+	5083	2	Intergenic	novelGene_4367	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68604965	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605238_68605461
86869	chr6	+	2061	11	Antisense	novelGene_ENSMUSG00000030357.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCACCCGGCTATCCGCGC	7219	False	NA	NA	False	NA	NA	NA	128407119	128415607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_128407846_128409386_128409624_128410067_128410254_128410487_128410575_128410667_128410765_128411271_128411425_128411714_128411832_128412669_128412822_128413534_128413676_128415366_128415426_128415501
86870	chr3	+	9153	44	NNC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	34	3737	intron_retention	FALSE	non_canonical	0	0	junction_13	102.39214536871	20	47	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGCGTGAGCACCTCGC	NA	False	NA	NA	False	NA	NA	NA	88742594	88821147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88742859_88744296_88744828_88753694_88753887_88761908_88762103_88762932_88763008_88763121_88763173_88763725_88763777_88764434_88764534_88765693_88765814_88766195_88766367_88770726_88770920_88776056_88776159_88777109_88777160_88787369_88787482_88794212_88794412_88794865_88794953_88796977_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544_88817218_88817436_88817547_88817620_88817726_88817932_88818116_88818187_88818321_88818592_88818750_88818844_88818977_88819066_88819423_88819546_88819601_88820005_88820085_88820163_88820233_88820871_88821012_88821101
86871	chr8	-	6919	45	NNC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-615	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	393.881874807223	5	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATGAAAGAGAAAACTTTT	NA	False	NA	NA	False	NA	NA	NA	96534707	96446798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459698_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475568_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96534576
86872	chr11	+	1848	6	Antisense	novelGene_ENSMUSG00000019173.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	954	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCCAGGCTCCGGCCT	NA	False	NA	NA	False	NA	NA	NA	100605837	100628977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100606991_100607585_100607677_100608666_100608790_100609255_100609409_100610740_100610995_100628903
86873	chr17	-	1084	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10125	-15022	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	20	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCGCTTTGTATACGTGC	2343	False	NA	NA	False	NA	NA	NA	6744546	6723822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
86875	chr4	-	2728	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	266	4483	1	-2	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	45	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTTTGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	148711210	148701321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
86876	chr9	+	1871	6	NIC	ENSMUSG00000032518.7	novel	1101	7	NA	NA	-2	0	intron_retention	FALSE	canonical	3	3720	junction_1	878.242107849538	59	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956852	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119956897_119957522_119957689_119958223_119959430_119959833_119959963_119960065_119960232_119960465
86877	chr14	-	2374	15	NNC	ENSMUSG00000040472.16	novel	2547	16	NA	NA	386	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	141.326099240482	128	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAAAAGCTTTCTCAC	NA	False	NA	NA	False	NA	NA	NA	55959247	55953330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957409_55957760_55957965_55958232_55958421_55958592_55958718_55959051
86878	chr7	-	3960	6	NNC	ENSMUSG00000007837.12	novel	926	6	NA	NA	-15414	-5702	intron_retention	FALSE	non_canonical	0	0	junction_1	0	190	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTCAACTACGTCCCG	NA	False	NA	NA	False	NA	NA	NA	44727515	44711930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44711954_44722911_44725651_44725731_44725852_44725974_44726164_44726244_44726353_44726734
86879	chr1	-	4155	16	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	-317	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2504.92485582569	2262	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTGCAAATTTTTTAGG	NA	False	NA	NA	False	NA	NA	NA	86287096	86272757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86272886_86276546_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86284980_86285022_86285175_86285828_86285946_86286927
86880	chr13	-	3479	2	Intergenic	novelGene_1308	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTCATCAATAAATTCC	NA	False	NA	NA	False	NA	NA	NA	7124509	7118529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_7121918_7124418
86881	chrM	+	2248	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	580	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	-4	True	NA	4	True	NA	NA	NA	11741	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13519_13674
86882	chr11	-	1409	7	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	4	-3	combination_of_known_splicesites	FALSE	canonical	3	8	junction_5	140.525205331048	15	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATCTTTGGTCTAAGCA	NA	False	NA	NA	False	NA	NA	NA	60307857	60291454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300411_60300457_60307811
86883	chr6	+	867	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	-106	-374	-106	374	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	116150591	116151458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_116150600_116151500
86884	SIRV3	-	2264	8	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-947	multi-exon	FALSE	non_canonical	0	0	junction_1	637.030483363782	2	59	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTGCCAAGCGCACATAA	NA	False	NA	NA	False	NA	NA	NA	9943	1947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2016_4580_4779_6057_6831_6927_7241_8133_8208_8755_8976_9189_9299_9434
86885	chr14	-	1581	11	NNC	ENSMUSG00000040472.16	novel	2547	16	NA	NA	204	13	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	152.779874329049	462	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55957386	55953320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55953928_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252
86886	SIRV1	-	2244	8	NNC	SIRV1A	novel	1363	6	NA	NA	11	0	intron_retention	FALSE	non_canonical	0	0	junction_6	2408.1446580049	7	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	11632	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444_10576_10647_10792_10882
86887	chr6	-	1904	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	101	-4	-43	4	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	8	True	NA	NA	False	NA	NA	NA	7693153	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
86888	chr18	+	2570	15	Antisense	novelGene_ENSMUSG00000024587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.28769688409428	64003	28	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGCTCACCCCAACGTGC	NA	False	NA	NA	False	NA	NA	NA	64632725	64649547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_64633723_64634375_64634504_64634812_64634946_64636577_64636693_64637408_64637543_64637916_64638114_64638219_64638449_64640841_64640932_64642316_64642386_64643522_64643601_64644679_64644773_64644851_64644949_64645054_64645128_64648402_64648483_64649490
86889	chr11	-	2660	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	-19	-152	-19	152	multi-exon	FALSE	canonical	3	343	junction_6	73.4786608478952	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATCCAGGTTTCATTTTG	NA	False	NA	NA	False	NA	NA	NA	54924290	54869781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
86890	chr4	-	2534	14	NIC	ENSMUSG00000028896.14	novel	2326	11	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_11	296.744127023732	5	48	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	NA	False	NA	NA	False	NA	NA	NA	132080944	132059233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132075310_132075432_132079432_132079555_132079973_132080010_132080907
86891	chr11	-	3481	19	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	6073	1818	6073	978	3prime_fragment	FALSE	canonical	3	859	junction_18	101.233259551919	72	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97072634	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450
86892	chr11	+	2675	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	-1	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	754.535489924467	38	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTATGAGAATTTCACAA	NA	False	NA	NA	False	NA	NA	NA	20151433	20176809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20175902_20176004
86893	chr15	-	5083	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1266	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCAGTAAGGTCTCTTCT	9978	False	NA	NA	False	NA	NA	NA	22704912	22699736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
86895	chr7	+	1951	7	FSM	ENSMUSG00000030946.14	ENSMUST00000033241.6	1612	7	13	-352	13	352	multi-exon	FALSE	canonical	3	290	junction_6	19.9979165581484	682	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATAGACTGGCAGG	NA	False	NA	NA	False	NA	NA	NA	132212380	132308501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320
86896	SIRV3	-	2498	6	NNC	SIRV3C	novel	796	3	NA	NA	0	2702	intron_retention	FALSE	non_canonical	0	0	junction_1	690.830225163897	97239	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAATAAAACGTGCATCCT	NA	False	NA	NA	False	NA	NA	NA	9943	6057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_-_6644_6994_7989_8127_8208_8755_8976_9189_9299_9434
86897	chr1	-	725	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-40	-31	40	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
86898	chr13	-	2041	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	-161	191	28	-191	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	939	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	NA	False	NA	NA	NA	104953622	104767838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
86899	chr1	+	2602	12	NNC	ENSMUSG00000025971.7	novel	3540	5	NA	NA	-18077	-1997	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.141597106945	1547	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACATTGGTGTCCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	57427409	57455115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_57427915_57429803_57429916_57430605_57430693_57432505_57432646_57433204_57433250_57435884_57435956_57440527_57440685_57445544_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
86900	chrM	-	1144	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15307	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGTTTCTGTAGTTGAA	900	False	NA	60	True	NA	NA	NA	15288	14144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14100_15300
86901	chrY	+	6695	2	Intergenic	novelGene_4711	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	62	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	60513147	60519911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_60513580_60513648
86902	chr17	-	1333	3	Fusion	ENSMUSG00000118161.2_ENSMUSG00000061613.14	novel	703	2	NA	NA	-10254	38	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1982	33	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGATAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	31888120	31862833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_31863778_31874005_31874315_31888040
86903	chr12	+	1456	14	NNC	ENSMUSG00000112449.2	novel	3646	16	NA	NA	7	-163	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_13	256.274192103812	46	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGTCTTCAGAACTGGA	2627	False	NA	NA	False	NA	NA	NA	55202161	55230333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230269
86904	chr4	+	8000	22	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	-12	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	162.377167949197	698	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	NA	False	NA	NA	NA	130390619	130508873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130495435_130495593_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
86905	chr2	+	8409	36	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	-2	49901	intron_retention	FALSE	non_canonical	0	0	junction_4	405.318885796941	2552	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCCGCCCCCGGCCCCCG	NA	False	NA	NA	False	NA	NA	NA	166747957	166838210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764070_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623_166791277_166791660_166791749_166792149_166792272_166792698_166793016_166793185_166793266_166794241_166794395_166795129_166795272_166796819_166797035_166801944_166802038_166805344_166805515_166806498_166806638_166837953
86906	chr4	+	2174	8	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	16	20748	16	-2735	5prime_fragment	FALSE	canonical	3	152	junction_6	22.2049819745434	81	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGATCAATCAATCAATCAA	-2	True	NA	NA	False	NA	NA	NA	3574890	3595871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356
86907	chr16	+	3249	7	FSM	ENSMUSG00000072419.6	ENSMUST00000097175.5	1948	7	-262	-1039	-262	1039	multi-exon	FALSE	canonical	3	478	junction_4	51.0968579160098	2450	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATACCTAATAAAAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	48130577	48141125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
86908	chr13	+	2689	2	Genic_Genomic	ENSMUSG00000113565.2	novel	544	1	NA	NA	-82	335101	multi-exon	FALSE	canonical	0	0	junction_1	0	199	39	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATCCTGCAGAGTCTCC	3006	False	NA	NA	False	NA	NA	NA	65706899	66042626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_65708611_66041648
86909	chr1	-	5398	16	Fusion	ENSMUSG00000026037.15_ENSMUSG00000026035.16	novel	1033	7	NA	NA	1	-5	multi-exon	FALSE	non_canonical	0	0	junction_7	90.3797912515108	1590	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCACATGTGAGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	58544083	58470160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304_58484791_58486789_58487248_58489544_58489707_58491245_58491373_58494753_58494892_58496935_58497020_58500296_58503274_58505147_58505182_58541000_58541044_58543930
86910	chr19	+	1804	2	Antisense	novelGene_ENSMUSG00000075268.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17108	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGTTGCTTTTAAAAGC	378	False	NA	NA	False	NA	NA	NA	16141460	16244999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_16142093_16243827
86911	chr16	+	6094	28	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	78	3357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	362.486092633273	39	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAATCAGTGTTGTGAAC	NA	False	NA	NA	False	NA	NA	NA	48251677	48454620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381936_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
86912	chr4	-	3763	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	4	-1501	0	1501	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	109	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGTATTTTATTGTAGT	-1	True	NA	NA	False	NA	NA	NA	34614909	34569294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
86913	chr4	-	2268	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	62	192	62	-192	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACACACTCCCCACCCA	NA	False	NA	NA	False	NA	NA	NA	137523633	137469235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
86914	chr1	+	2019	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	214	602	-31	283	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	72	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGCCTTTAATCCCGGC	NA	False	NA	NA	False	NA	NA	NA	167177773	167195499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
86915	chr19	+	600	5	NIC	ENSMUSG00000032946.17	novel	2124	4	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	104.357558422953	1058	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	NA	False	NA	NA	NA	6449915	6453668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6449995_6451745_6451894_6452501_6452605_6453053_6453117_6453461
86916	chr5	+	387	1	Intergenic	novelGene_929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
86917	chr16	+	3561	27	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	42	784	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	367.021324130988	23	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATTTACTGATAAATGT	NA	False	NA	NA	False	NA	NA	NA	48251641	48452047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
86918	chr2	+	1469	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	72	0	6	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	24716	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8619	False	NA	NA	False	NA	NA	NA	61542109	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
86919	SIRV6	+	1133	6	NNC	SIRV6A	novel	1311	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9774.15061066689	12	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_3165_7104_7264_7798_7924_10724_10819_11031_11109_11205
86920	chr5	+	3260	8	NIC	ENSMUSG00000037720.17	novel	5322	9	NA	NA	-5	-2116	intron_retention	FALSE	canonical	3	67	junction_7	130.643931105482	12	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTAAGTATTTACTATGT	NA	False	NA	NA	False	NA	NA	NA	67418142	67446688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438_67443560_67444352
86921	chr4	+	5305	7	Fusion	ENSMUSG00000084350.2_ENSMUSG00000058186.14	novel	2413	3	NA	NA	20	34015	multi-exon	FALSE	non_canonical	0	0	junction_1	28.1212651841192	544	22	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAATCTTTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	145397274	145590527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145397412_145510590_145510684_145541329_145541363_145551755_145551837_145552678_145552806_145554256_145558916_145590352
86922	chrM	+	1129	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	15	0	15	0	mono-exon	FALSE	NA	NA	NA	NA	NA	278	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	13	False	NA	102	True	NA	NA	NA	14159	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
86923	chr5	+	4591	14	NIC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	8	1125	intron_retention	FALSE	canonical	3	156	junction_4	18.1971452341997	10	126	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCCCAACAAATGCAGCT	NA	False	NA	NA	False	NA	NA	NA	24599413	24616177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24612454_24613565_24613817_24614351
86924	chr9	+	938	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	901	-1	-91	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
86925	chr17	+	1750	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	98	1	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
86926	chrX	+	1692	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	123	-747	123	747	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAATAATAAGTAA	NA	False	NA	NA	False	NA	NA	NA	79500470	79502162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_79500500_79502200
86927	chrX	-	3592	2	Intergenic	novelGene_4030	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAACAATTACCAGGTATT	NA	False	NA	NA	False	NA	NA	NA	116231727	116226793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116227704_116229045
86928	chr2	-	5563	12	NNC	ENSMUSG00000049950.7	novel	1042	2	NA	NA	15	22344	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	87.3938553355625	1334	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACATTATCTACTACTAC	2332	False	NA	NA	False	NA	NA	NA	3333665	3307641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_3308068_3310501_3310649_3313492_3313611_3313697_3313786_3313892_3314013_3315728_3315895_3317169_3317286_3323607_3323777_3325865_3326035_3326299_3326437_3327105_3330911_3333563
86929	chrM	-	844	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTGTTTATGGGATAC	5484	False	NA	NA	False	NA	NA	NA	918	74	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_100_900
86930	chr18	+	5056	11	NIC	ENSMUSG00000009535.14	novel	3791	3	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	2	23	junction_1	335.299880703826	2020	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTTTGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	68438067	68457920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_68438190_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
86931	chr2	-	2653	13	NNC	ENSMUSG00000026925.17	novel	4147	10	NA	NA	2818	6893	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	889	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTTCTGCGGTCACTTCC	8077	False	NA	NA	False	NA	NA	NA	26286665	26279367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26279443_26279945_26280151_26280239_26280322_26280505_26280588_26281093_26281184_26281869_26281979_26282423_26282686_26282915_26283010_26283096_26283215_26283306_26283400_26283529_26283592_26285035_26285182_26285430
86932	chrM	+	839	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	3	-161	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	31	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	-11	True	NA	NA	False	NA	NA	NA	7765	8604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
86933	chr6	-	3225	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-155	422	at_least_one_novel_splicesite	FALSE	canonical	3	123	junction_11	1507.73835882678	56	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGACTGGAGATGGGGCC	8330	False	NA	NA	False	NA	NA	NA	145022065	144944461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145002586_145002679_145021614
86934	chr9	+	748	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-214	-44	214	mono-exon	FALSE	NA	NA	NA	NA	NA	44958	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAGCACCTG	NA	False	NA	NA	False	NA	NA	NA	96777666	96778414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
86935	chr10	-	7340	17	NNC	ENSMUSG00000036112.16	novel	2551	12	NA	NA	8	24679	intron_retention	FALSE	non_canonical	0	0	junction_1	1061.1292757453	342	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGCTACGTCAGCGGAGAA	NA	False	NA	NA	False	NA	NA	NA	93725662	93669671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_93669753_93679838_93679912_93681470_93682965_93686000_93686208_93688571_93688679_93691973_93692180_93693588_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
86936	chr2	+	6356	22	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	3	12043	intron_retention	FALSE	non_canonical	0	0	junction_13	762.049884988433	1564	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTAGTGGTCACCCTG	664	False	NA	NA	False	NA	NA	NA	26279370	26299177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26287986_26288568_26288704_26289243_26289360_26289423_26289595_26290053_26290156_26290384_26290505_26290897_26291025_26291614_26291713_26292113_26292235_26297777
86937	chr5	-	2540	11	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-69	56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	185.225808136987	1368	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTAACTCCCCCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	34093663	34055203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056252_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
86938	chr18	+	7899	12	Antisense	novelGene_ENSMUSG00000065904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	250	138	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCACGTGGGGTGGGGGCG	NA	False	NA	NA	False	NA	NA	NA	35070691	35087397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35071449_35071638_35071778_35071985_35072078_35072394_35072493_35073250_35073368_35073892_35073996_35074915_35076347_35079004_35079092_35079548_35079712_35080963_35081070_35081157_35085788_35087221
86939	chr4	+	3403	10	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	2498	5	NA	NA	-1	79355	multi-exon	TRUE	non_canonical	0	0	junction_1	40.0887903423278	663	29	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGATGATTCTATGCAAT	925	False	NA	NA	False	NA	NA	NA	145237359	145431270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237410_145239538_145239640_145311773_145311905_145314001_145314095_145315865_145315978_145343687_145343746_145347127_145347255_145348721_145348860_145349689_145352250_145431237
86940	chr3	+	1208	4	ISM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	4	-2	-4	intron_retention	FALSE	canonical	3	13832	junction_1	803.393220451023	113	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCCCGTGGTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	137570349	137572679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771
86941	chr15	+	5082	2	Intergenic	novelGene_3217	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	1235	junction_1	0	234	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAACGCACCAAATGAAAGA	NA	False	NA	NA	False	NA	NA	NA	22699736	22704912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22704559_22704652
86942	chr18	+	893	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	45	-111	intron_retention	FALSE	canonical	3	6761	junction_1	1972.2719285129	70	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGGTCTTCTGGTGGTC	NA	False	NA	NA	False	NA	NA	NA	75133592	75136340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_75133615_75134261_75134315_75134420_75134872_75135094_75135194_75135731_75135924_75136264
86944	chr11	-	3580	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	44	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1071.55122447164	160	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACATGTCTGCAGGTTTC	8180	False	NA	NA	False	NA	NA	NA	50216456	50185295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50185790_50185942_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
86946	chr5	-	3058	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	-45	11	-45	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	996	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8212	False	NA	NA	False	NA	NA	NA	137305981	137293976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
86947	chr3	-	3399	20	ISM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	166	-4	-23	4	3prime_fragment	FALSE	canonical	3	1102	junction_11	86.7727314610285	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104725455	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
86948	chr4	-	2449	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	60	13	60	-13	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	10	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTGAGGCCAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	137523635	137469056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
86949	chrM	-	748	1	Intergenic	novelGene_4281	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	205	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTAAATTTATGTACTCA	0	True	NA	-246	True	NA	NA	NA	16188	15440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrM_-_15400_16200
86950	chr1	+	615	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	-37	-47	-37	47	mono-exon	FALSE	NA	NA	NA	NA	NA	8	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAAAGGATG	NA	False	NA	NA	False	NA	NA	NA	95426308	95426923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_95426300_95426900
86951	chr1	-	1056	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	67	10	5	-10	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	59	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTGAAATCTGTCGTAA	NA	False	NA	NA	False	NA	NA	NA	152262366	152246495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
86952	chrX	+	4267	8	NNC	ENSMUSG00000031226.14	novel	2638	6	NA	NA	21	5317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	642.502791227162	126	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATGTTGGTTGTCATGG	NA	False	NA	NA	False	NA	NA	NA	104123401	104134109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621_104128069_104129571_104129618_104131762
86953	chr15	+	1838	16	Fusion	ENSMUSG00000023048.14_ENSMUSG00000056851.15	novel	3222	14	NA	NA	12	6	multi-exon	FALSE	canonical	2	4	junction_3	180.152453956827	1124	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTTTTCTTTGTGAATA	2417	False	NA	NA	False	NA	NA	NA	102367648	102407322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_+_102367691_102368542_102368582_102368804_102369155_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
86954	chr11	+	2760	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	754.535489924467	2221	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	NA	NA	NA	20151433	20176856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20176358_20176422
86955	chrM	+	3683	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-56	-2045	-56	2045	mono-exon	FALSE	NA	NA	NA	NA	NA	58	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTATAAAAAACAACTGTCT	344	False	NA	-34	True	NA	NA	NA	1037	4720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_4700
86956	chr7	-	1721	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5582.89117652215	6	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTTGATTAAACTCATGA	8422	False	NA	NA	False	NA	NA	NA	99132858	99127115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128651_99129142_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
86957	chrX	+	11671	8	Antisense	novelGene_ENSMUSG00002076267.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	145	238	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGGTATAGCTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	29454368	30157425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_29457310_29699772_29699780_29804994_29807020_30001559_30002221_30002437_30003241_30139175_30139253_30139665_30144589_30157191
86958	chr5	+	354	1	Intergenic	novelGene_915	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCCCGGCGGATCTTTCC	NA	False	NA	NA	False	NA	NA	NA	146197788	146198142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
86959	chr6	-	2947	13	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	2879.67149336903	21	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446874	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51444370_51444407_51446650
86960	chrM	-	1215	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1141	-5	1141	mono-exon	FALSE	NA	NA	NA	NA	NA	47	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGCTAGAGGTGGGTAGAC	9245	False	NA	NA	False	NA	NA	NA	6943	5728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5700_6900
86961	chr5	+	387	1	Intergenic	novelGene_930	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
86962	chr7	-	668	5	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5980.82165655355	21	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129291_99131771_99131908_99132798
86963	chr11	-	1102	10	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	1602	223	1468	0	3prime_fragment	FALSE	canonical	3	16927	junction_8	1793.60603736828	223	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111604	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547
86964	chr11	+	2569	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-187	536	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	278.973963341066	65	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAGTGCCCAGTTGAAG	NA	False	NA	NA	False	NA	NA	NA	57994791	58009956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_57994846_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
86965	chr2	+	1077	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	-169	4	-169	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1614	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAAAATCGGGGTGTTG	NA	False	NA	NA	False	NA	NA	NA	152528785	152529862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_152528800_152529900
86966	chr19	+	3235	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	-4	-1456	-4	1456	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	4523	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCATCACTGCCCGGCTT	4056	False	NA	NA	False	NA	NA	NA	41900357	41908555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
86967	chr2	+	7177	11	Fusion	ENSMUSG00000078906.10_ENSMUSG00000080888.4	novel	1281	4	NA	NA	-8	52117	intron_retention	TRUE	non_canonical	0	0	junction_4	378.762669755086	3094	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTGCAAGCTTGACCTG	NA	False	NA	NA	False	NA	NA	NA	174852025	174983828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174852115_174858430_174858558_174858749_174858811_174859951_174860158_174860409_174860857_174930495_174930911_174939238_174939479_174968262_174973562_174974720_174974781_174974986_174975115_174983723
86968	chr14	-	2838	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	75	0	-11	0	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	1441	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCAGTGGCTTG	6419	False	NA	NA	False	NA	NA	NA	66071368	66056486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
86969	chr18	+	2180	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	419.012317616141	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	NA	False	NA	NA	NA	68433474	68454978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_68433497_68437595_68437762_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
86970	chr15	+	2236	1	FSM	ENSMUSG00000055041.9	ENSMUST00000230815.2	1331	1	119	-1024	119	1014	mono-exon	FALSE	NA	NA	NA	NA	NA	735	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCCTGATGGTGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	76784283	76786519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76784300_76786500
86971	chr6	-	1091	6	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1384	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAATCGGTCTACAAACAA	9967	False	NA	NA	False	NA	NA	NA	67261284	67248880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67249012_67249122_67249213_67249802_67249921_67254742_67254921_67258629_67258804_67260884
86972	chr19	+	3422	14	NNC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	321.137788635876	62	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTAATGTGTTCAGAGTTA	244	False	NA	NA	False	NA	NA	NA	46064408	46073963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450_46073778_46073875
86973	chr5	-	1211	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	40	-11	-2	11	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	73122	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCCTTCCTGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	117425650	117420707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
86974	chrM	+	1761	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1144	1	NA	NA	-824	-10	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATCCATGTCTTGATAG	-4	True	NA	-30	True	NA	NA	NA	13320	15278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13943_14139
86975	chr11	-	3746	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	33	0	33	0	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	2992	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8169	False	NA	NA	False	NA	NA	NA	50216467	50185293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
86976	chr16	-	7587	2	Intergenic	novelGene_3847	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2441	50	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAAACCCCGTCCCTTT	9055	False	NA	NA	False	NA	NA	NA	75861752	75854117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_75854775_75854822
86977	chr6	-	537	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	-27	7	-27	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	1713	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115785735	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
86978	chr11	-	1027	9	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	1999	223	1865	0	3prime_fragment	FALSE	canonical	3	16927	junction_8	1897.8792769826	308	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111207	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105
86979	chr13	-	2259	7	NNC	ENSMUSG00000060739.9	novel	2700	6	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	368.504372053063	3	32	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGTGGTCTAACAGT	NA	False	NA	NA	False	NA	NA	NA	97274383	97265931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97266455_97266682_97267737_97268350_97268544_97270046_97270227_97271801_97271882_97272108_97272217_97274262
86980	chr13	-	2029	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	17	25	17	-25	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	264	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGGTTTTTTTGCATAT	NA	False	NA	NA	False	NA	NA	NA	104953444	104767672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
86981	chrM	+	938	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	16	1	16	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	861	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	13	False	NA	-9	True	NA	NA	NA	85	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_100_1000
86982	chr6	+	2401	9	NNC	ENSMUSG00000013736.17	novel	785	2	NA	NA	-3	-5	intron_retention	FALSE	canonical	2	15	junction_1	299.74197236957	3	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTCTTTGTCGTTATT	NA	False	NA	NA	False	NA	NA	NA	106746243	106759430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_106746458_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
86983	chr11	-	2358	9	NIC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	-47	-11	intron_retention	FALSE	canonical	3	12659	junction_4	725.04271425896	86	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAAACTGCCTGTTTGGGC	NA	False	NA	NA	False	NA	NA	NA	69562095	69557773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561574_69561753
86984	chr14	-	4608	2	Antisense	novelGene_ENSMUSG00000037628.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	90	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACTAATAATTTGCATGAT	NA	False	NA	NA	False	NA	NA	NA	47008380	47003486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_47005525_47005810
86985	chr5	+	387	1	Intergenic	novelGene_931	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	88	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
86986	chrM	-	1925	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCCTCTTTTGGCTATA	77	True	NA	NA	False	NA	NA	NA	3466	1541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3500
86987	chr6	+	2116	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	46	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	80	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTTAGTGGTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	122684572	122691584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122691292_122691332
86988	chr10	-	3007	28	FSM	ENSMUSG00000052798.14	ENSMUST00000064848.7	3114	28	32	75	-9	-72	multi-exon	FALSE	canonical	3	716	junction_19	68.4831139760951	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTTTGTATTATATCAG	NA	False	NA	NA	False	NA	NA	NA	117628578	117586600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
86989	chr15	+	2146	17	Fusion	ENSMUSG00000023048.14_ENSMUSG00000056851.15	novel	3222	14	NA	NA	0	-17	multi-exon	FALSE	canonical	0	0	junction_3	189.169195100577	8	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATTAAAAGATGGA	3286	False	NA	NA	False	NA	NA	NA	102368517	102407299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_+_102368582_102368804_102369155_102370605_102370861_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
86990	chr6	+	1833	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	46	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	135	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGGTCTTATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	122684572	122691588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690258_122690585
86991	chr9	+	2915	5	NNC	ENSMUSG00000086228.4	novel	846	4	NA	NA	-121	-181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	368.816604154423	1806	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATCTTAAAAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	65279006	65287478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_65279411_65281031_65281242_65284190_65284293_65285080_65286959_65287157
86992	chr6	-	2903	12	NIC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	3	-4	combination_of_known_junctions	FALSE	canonical	3	615	junction_1	1927.31213939119	15	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCAAATTACTTGGTGTAA	NA	False	NA	NA	False	NA	NA	NA	51446871	51438107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51438899_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
86993	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	116	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
86994	chr12	+	1475	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-17	812	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1392.18023458012	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAAAGTGGTGTTAAAT	9242	False	NA	NA	False	NA	NA	NA	100165770	100173566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658_100172923_100172978
86995	chr12	-	870	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	-35	-329	-19	-6	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	32	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGAGTGGTTTTCTTAT	NA	False	NA	NA	False	NA	NA	NA	80690641	80680801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
86996	chr12	-	6444	31	NNC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	-108219	1957	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	270.555742870115	2333	54	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATGAATTGAGTAAACA	NA	False	NA	NA	False	NA	NA	NA	85979543	85860264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244_85871859_85873224_85873399_85878668_85878774_85890549_85890633_85890717_85890776_85892022_85892125_85896021_85896156_85904153_85904235_85910335_85910407_85911297_85911380_85923261_85923365_85925158_85925250_85926138_85926249_85935931_85936012_85937789_85937855_85938887_85938983_85945764_85945879_85946162_85946258_85955565_85955627_85959322_85959364_85964447_85964605_85965702_85966010_85969729_85969851_85972411_85972559_85973573_85973678_85976635_85976765_85979497
86997	chr12	-	5176	2	Intergenic	novelGene_4381	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTATTGTTGCGACAC	NA	False	NA	NA	False	NA	NA	NA	68610272	68605039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_68609647_68609703
86998	chr17	+	2493	13	Fusion	ENSMUSG00000072761.11_ENSMUSG00000116564.2	novel	3220	10	NA	NA	-28	-935	multi-exon	FALSE	canonical	0	0	junction_1	181.045325049343	1072	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATGCAATCTGTAGTTCT	NA	False	NA	NA	False	NA	NA	NA	17514676	17614226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_17514852_17590167_17590297_17593719_17593892_17594838_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
86999	chr9	-	2225	1	Genic_Genomic	ENSMUSG00000060461.6	novel	NA	NA	NA	NA	-425	674	mono-exon	FALSE	NA	NA	NA	NA	NA	27	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTAGGCACATGCTGCCAC	NA	False	NA	NA	False	NA	NA	NA	78275884	78273659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_78273700_78275900
87001	chrM	-	903	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	207	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGACCAAACCTTTGTGT	5414	False	NA	NA	False	NA	NA	NA	988	85	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_100_1000
87002	chr5	-	4283	2	ISM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	14885	3	14840	-3	3prime_fragment	FALSE	canonical	3	2190	junction_1	0	5	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTTATGCTTGTCTTTC	4241	False	NA	NA	False	NA	NA	NA	134653316	134648733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_134650503_134650802
87003	chr4	-	2787	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	-67	-11	intron_retention	FALSE	canonical	3	54	junction_2	402.382192164898	1325	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCACCAACAGTTTAGTGT	NA	False	NA	NA	False	NA	NA	NA	148711543	148699933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148701302_148702022_148702163_148703103_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
87005	chr10	+	2019	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	11	-1	11	0	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	1279	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	NA	False	NA	NA	NA	93289283	93320737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
87006	chrX	-	2987	14	NNC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	212	70	intron_retention	FALSE	canonical	3	21	junction_13	584.404688753167	195	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	100129414	100122745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100129064_100129193_100129261_100129344
87007	chr1	-	1733	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	2761	0	-2761	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGCCTTTTACATACCA	NA	False	NA	NA	False	NA	NA	NA	13730770	13696314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
87008	chr4	-	10304	8	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2361	181	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAAGACCGTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	42231661	41877210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41881897_41881987_41882569_42014606_42014614_42056189_42056202_42207622_42207630_42226364_42229108_42229299_42231135_42231228
87009	chr14	-	881	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-24	-65	-24	65	mono-exon	FALSE	NA	NA	NA	NA	NA	1669	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTTATATGAGATTGC	NA	False	NA	NA	False	NA	NA	NA	88361268	88360387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_88360400_88361300
87010	chr18	-	959	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	21	-15	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	73958	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
87011	chr8	+	1982	9	FSM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	-3	-281	-3	279	multi-exon	FALSE	canonical	0	0	junction_1	448.998590615828	1241	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAGGACCATGCAGGCAT	NA	False	NA	NA	False	NA	NA	NA	70980393	70988257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
87012	chr17	+	998	7	FSM	ENSMUSG00000024132.7	ENSMUST00000234304.2	1137	7	52	87	-9	13	multi-exon	FALSE	canonical	3	455	junction_1	41.5508390074403	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACCTACAGCTGCCACAT	4892	False	NA	NA	False	NA	NA	NA	24645666	24658207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24645717_24645826_24645914_24652106_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
87013	chr13	-	2086	18	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	6	435	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	103.791379791537	320	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAAAACAACTG	NA	False	NA	NA	False	NA	NA	NA	100629081	100596290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100596929_100598355_100598471_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
87014	chr6	+	1512	7	Intergenic	novelGene_4245	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATGAGTGTGGCCAGTGC	-7	True	NA	NA	False	NA	NA	NA	124935782	124941753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_124936601_124936761_124936912_124937051_124937162_124938121_124938324_124939320_124939410_124939584_124939661_124941686
87015	chr11	+	3006	9	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-26	1615	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	101.038359052392	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTATAATGATTTGAGAAT	NA	False	NA	NA	False	NA	NA	NA	62349259	62406858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729_62404561_62404760_62405717_62406325
87016	chr6	+	2958	3	NIC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	76	-2	intron_retention	FALSE	canonical	3	4116	junction_2	213	115	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTTATCTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	122684602	122691590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_122684893_122688496_122689675_122690100
87017	chr15	+	1041	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	20	-24	-6	24	multi-exon	TRUE	canonical	3	114	junction_1	0	1127	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCTGTCCCTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	76784129	76785529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76784193_76784551
87018	chr13	-	5640	20	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	-24153	-191	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_15	313.582083339737	1164	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	NA	False	NA	NA	NA	104977803	104767838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194_104953331_104953618_104953872_104963559_104963611_104969361_104969504_104970753_104970827_104973870_104975815_104976375
87019	chr3	+	7051	16	FSM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	10	1044	10	-1044	multi-exon	FALSE	canonical	3	954	junction_10	99.4709114375767	2132	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTAAATGATGATTTCAT	NA	False	NA	NA	False	NA	NA	NA	63883536	63928956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
87020	chrM	+	1131	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	191	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	260	False	NA	NA	False	NA	NA	NA	10357	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_10805_10860
87021	chr11	+	7727	13	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	0	22560	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	989.287492620601	2268	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGCCCGCCACGCCCTCC	NA	False	NA	NA	False	NA	NA	NA	20151438	20199416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20176505_20176579_20179481_20180422_20180595_20186005_20186103_20188465_20188591_20189197_20190699_20191885_20192237_20199304
87023	chr3	+	3621	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	15	213	2	-8	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAATAATAAAAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	102927937	102965094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
87024	chr7	+	1965	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	-14	7	-14	-1	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	984	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATTTTTTTTTCAAT	NA	False	NA	NA	False	NA	NA	NA	28416214	28437562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
87025	chr16	+	2357	12	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_11	564.272309855287	41	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5701	False	NA	NA	False	NA	NA	NA	22926155	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
87026	chr18	-	3704	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	7	-800	7	-633	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	656	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCACTCACTCAGCACAC	NA	False	NA	NA	False	NA	NA	NA	14815878	14757887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
87027	chr19	+	3442	1	FSM	ENSMUSG00000044065.4	ENSMUST00000057038.4	906	1	-30	-2506	-30	2506	mono-exon	FALSE	NA	NA	NA	NA	NA	2430	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGGCTGTACTATTGGA	NA	False	NA	NA	False	NA	NA	NA	41448221	41451663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41448200_41451700
87028	chr5	+	1093	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	46	219	-24	-219	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAACTCCGGTCTGGAT	NA	False	NA	NA	False	NA	NA	NA	115697571	115701567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
87029	chr16	-	1169	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	28	646	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2886.14405392385	89	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	NA	False	NA	NA	NA	95928901	95922787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928766
87030	chr4	+	6463	8	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-32	4149	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	75.418559941658	77	105	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACAGTGTACTTACATGTA	NA	False	NA	NA	False	NA	NA	NA	147216462	147269185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147216647_147219028_147219122_147249797_147249844_147260303_147260362_147261203_147261331_147262781_147263082_147263333_147267440_147267636
87031	chr7	+	2377	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	339	6	44	2	multi-exon	FALSE	canonical	3	986	junction_1	0	1272	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACTTGCTGTGAGTAT	414	False	NA	NA	False	NA	NA	NA	44465850	44480230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
87032	chr6	+	3786	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	-934	-2397	-925	-1442	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	5607	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTTTTTGTGACTAATA	NA	False	NA	NA	False	NA	NA	NA	39568582	39578802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
87034	chr17	+	2455	7	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	732.756136484407	39	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACTGACTTAAAGTTGGG	NA	False	NA	NA	False	NA	NA	NA	29251646	29262329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357_29261539_29261638
87035	chr10	+	2176	9	NIC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	8904	junction_3	880.241577281487	38360	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	127919174	127926142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
87036	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	152	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
87037	chr8	+	1910	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	186	0	-18	0	multi-exon	FALSE	canonical	3	319	junction_1	42.4480859403578	459	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	NA	False	NA	NA	NA	48563178	48594700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
87038	chrM	+	2605	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	4	-1027	4	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	33	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	1	True	NA	26	True	NA	NA	NA	1097	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
87039	chr17	-	1836	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	22	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149065	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36144906_36145585_36146932_36147054_36147166_36147519_36147629_36148888
87040	chr11	+	4052	16	NNC	ENSMUSG00000046756.11	novel	1962	5	NA	NA	20	20120	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	311.164793781187	1625	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGACAGGCTGCTAGGCCA	NA	False	NA	NA	False	NA	NA	NA	115494770	115518982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643_115499435_115499878_115499982_115500106_115500264_115500366_115500475_115502728_115502864_115506289_115506416_115507344_115507476_115508338_115508528_115511702_115511874_115514697_115514854_115515024_115515199_115518894
87041	chr15	-	1744	14	NIC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	-23	5	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	986.125998646776	129	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	2640	False	NA	NA	False	NA	NA	NA	43146138	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43144414_43144625_43145998
87042	chr15	+	3074	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	55	-588	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	224.467626965573	27	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATTGAGCAAGGTCCTGGT	NA	False	NA	-39	True	NA	NA	NA	101982353	102005020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687_102004254_102004299
87043	chrX	+	4485	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	52	155	0	-155	multi-exon	FALSE	canonical	3	179	junction_1	98.1322449554681	1940	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGCTTATTGTATTAG	NA	False	NA	NA	False	NA	NA	NA	13147260	13160136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
87045	chr9	-	3536	13	NIC	ENSMUSG00000032113.17	novel	3397	13	NA	NA	-48	118	combination_of_known_junctions	FALSE	canonical	2	2	junction_12	126.81340185047	177	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGAATCAAGTTTTCA	807	False	NA	NA	False	NA	NA	NA	36637795	36619659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637678
87046	chr17	+	717	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	112	1	0	0	multi-exon	FALSE	canonical	3	5482	junction_4	1458.64553610533	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
87047	chr19	-	4337	15	NNC	ENSMUSG00000084957.4	novel	787	5	NA	NA	-11	26084	intron_retention	FALSE	non_canonical	0	0	junction_1	63.1094368570039	862	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGGGCTGCGGAGGAGG	NA	False	NA	NA	False	NA	NA	NA	53933069	53892207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_53892299_53895878_53895986_53897541_53897844_53899356_53899451_53901239_53901355_53908043_53908266_53909646_53909746_53910446_53910561_53914634_53914745_53914965_53915077_53915624_53915763_53917511_53919934_53920560_53920637_53931896_53932011_53932847
87048	chr3	+	1372	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	20	64	0	-64	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	1245	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACCTGGTCTACAGAGT	2580	False	NA	NA	False	NA	NA	NA	95018352	95030298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
87050	chr11	+	5664	14	Antisense	novelGene_ENSMUSG00000004393.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTGTCAGTGCGCACGCG	NA	False	NA	NA	False	NA	NA	NA	6205171	6217730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_6209259_6209546_6209621_6211615_6211722_6212456_6212549_6212663_6212737_6213938_6214040_6214130_6214237_6214674_6214793_6215506_6215755_6216313_6216410_6216514_6216683_6216810_6216974_6217418_6217579_6217658
87051	chr11	+	1796	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	213	13	-62	-13	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	265	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAACCTCATCCTCTT	5344	False	NA	NA	False	NA	NA	NA	52251899	52280211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
87052	chr3	+	2230	18	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-9	-367	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	314.866567004662	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTTGATCTTCCATTT	4840	False	NA	NA	False	NA	NA	NA	34074237	34124104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065_34123519_34124046
87053	chr1	-	1529	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-746	0	-746	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	False	NA	NA	False	NA	NA	NA	24653798	24652269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653800
87054	chr7	-	2804	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	-162	-1131	-162	1131	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	38	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCCATTTTACTGCTCA	NA	False	NA	NA	False	NA	NA	NA	126398588	126393274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
87055	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1585	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
87056	chr6	+	1970	2	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	24749	intron_retention	TRUE	non_canonical	0	0	junction_1	0	171	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTTATTTTATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	122684552	122716341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122686360_122716178
87057	chr10	+	2043	13	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	16	0	intron_retention	FALSE	non_canonical	0	0	junction_1	779.314883407214	7	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	NA	False	NA	NA	NA	111309118	111332745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111321381_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111330008_111330155_111330655_111330686_111331185_111331237_111331900
87058	chr1	+	7857	11	NNC	ENSMUSG00000026275.14	novel	10315	10	NA	NA	106	-2152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	197.651713880755	1350	94	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGCACACACATTTCTACAA	NA	False	NA	NA	False	NA	NA	NA	93270681	93299059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611_93294284_93294483
87060	chr11	-	3749	9	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	9	-1219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	434.789442575369	419	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTCAGTGCTGTGAGGA	NA	False	NA	NA	False	NA	NA	NA	120534521	120527756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120528824_120529466_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534406
87061	chr2	+	4629	15	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	81.5418072312027	184	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATATGTGTGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	128942931	128968511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960042_128960331_128961117_128964989_128965187_128965630_128965885_128967133
87062	chr19	+	2801	2	FSM	ENSMUSG00000056201.9	ENSMUST00000236645.2	736	2	8	-2073	8	17	multi-exon	FALSE	canonical	3	6346	junction_1	0	262	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCCGAGGGCTTATGTGG	NA	False	NA	NA	False	NA	NA	NA	5540551	5545246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_5540631_5542524
87064	chr17	-	684	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	42	8	-13	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	44	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	NA	False	NA	NA	NA	74623416	74606476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
87065	chr11	+	1619	8	NNC	ENSMUSG00000038845.12	novel	1799	7	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2079.42318336365	317	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCACTCGGGGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	95557835	95571593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519_95570815_95570935
87066	chr17	-	2355	8	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	-4	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	993.502421348076	29	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCGTTCGCCCAGTCCC	NA	False	NA	NA	False	NA	NA	NA	47093567	47084828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47084949_47085398_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093334
87067	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	32	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
87068	chr17	+	3582	19	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	35	3817	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	186.791269590047	18	56	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCCCCGAGGCCACCTCT	4638	False	NA	NA	False	NA	NA	NA	25459178	25465589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427_25462718_25462796_25463004_25463079_25463203_25463281_25463406_25463486_25463568_25463725_25463796_25464107_25464219_25464288_25464369_25464454_25464525_25464612_25464805_25464907_25464995_25465077_25465231_25465303_25465427_25465530
87069	chr11	+	2230	8	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-10888	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	328.229635891629	22	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	57984090	58009420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_57984231_57993927_57994039_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
87070	chr12	+	4180	7	Genic_Genomic	ENSMUSG00000116715.2	novel	883	3	NA	NA	-345962	2044	multi-exon	TRUE	non_canonical	0	0	junction_1	0	143	95	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGTATTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	20023643	20374840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_20023813_20026705_20027203_20135079_20135226_20137129_20137151_20294640_20294988_20371672_20372168_20372335
87072	chr3	+	4348	8	NIC	ENSMUSG00000118504.2	novel	1545	10	NA	NA	-169	-14	intron_retention	FALSE	canonical	3	130	junction_7	124.701930332178	1094	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAAAAGTTCAGATTT	NA	False	NA	NA	False	NA	NA	NA	89960041	89973362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89971862_89972816
87073	chrX	-	2787	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	51	10	-6	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	40	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921358	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
87074	chr5	+	341	1	Intergenic	novelGene_910	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCATGCCGGTGGTCCC	NA	False	NA	NA	False	NA	NA	NA	146197788	146198129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
87076	chr11	+	3069	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	-148	11	-148	0	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	1116	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117223022	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
87077	chr2	+	3465	11	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	7622	6	2960	-6	3prime_fragment	FALSE	canonical	3	2736	junction_5	164.584932481683	32	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTAGTGTCTGACTCCTC	NA	False	NA	NA	False	NA	NA	NA	162904228	162926602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
87078	chr4	-	1287	2	Genic_Genomic	ENSMUSG00000095042.2	novel	1002	1	NA	NA	47	1575	multi-exon	FALSE	non_canonical	0	0	junction_1	0	562	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACAGTTTGTATATCCTT	NA	False	NA	NA	False	NA	NA	NA	57371907	57369377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_57369528_57370770
87079	chr11	+	2223	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	-190	2	-190	-2	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	1046	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCATGAAGTGTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	57994788	58009418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
87080	chr11	-	481	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	19	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5758.22685381533	24	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGTCTTCTTGACACC	NA	False	NA	NA	False	NA	NA	NA	97673244	97668860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97668991_97669090_97669185_97672190_97672289_97672631_97672716_97673169
87081	chr1	+	1446	2	Antisense	novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGATAAATCATGTTGATGT	NA	False	NA	NA	False	NA	NA	NA	24652267	24653858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652711_24652855
87082	chr7	-	2194	1	NIC	ENSMUSG00000041775.8	novel	1883	3	NA	NA	8218	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	2735	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAACAAAAAATCCACAA	NA	False	NA	NA	False	NA	NA	NA	138439768	138437574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_138437600_138439800
87083	chr4	+	903	5	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	23	150547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	93.4408235194875	23	9	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTTGTCATGAACCACC	NA	False	NA	NA	False	NA	NA	NA	146695440	146893164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146695757_146697966_146698060_146703608_146703696_146892667_146892907_146892996
87084	chr2	+	2463	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	122	1087	-3	-71	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	198	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTAATTTTTGTGAAAAG	NA	False	NA	NA	False	NA	NA	NA	34662103	34666472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
87085	chr18	+	1606	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	29	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48179715	48181458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48179805_48179941
87086	chr2	-	5197	20	FSM	ENSMUSG00000026669.15	ENSMUST00000102985.8	4867	20	-339	9	32	-9	multi-exon	FALSE	canonical	2	42	junction_19	167.610417568725	986	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCCACTACATGTTTA	NA	False	NA	NA	False	NA	NA	NA	5017494	4994533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5016705
87087	chr1	+	825	1	Antisense	novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1950	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	NA	False	NA	NA	False	NA	NA	NA	24653068	24653893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24653100_24653900
87088	chr7	-	941	1	ISM	ENSMUSG00000057667.8	ENSMUST00000077408.8	3188	2	1619	1322	1619	-1322	mono-exon	FALSE	NA	NA	NA	NA	NA	44	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCCTCTTGATTCTAAC	NA	False	NA	NA	False	NA	NA	NA	19240673	19239732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_19239700_19240700
87089	chr7	-	2653	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	49	182	2	-182	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	181	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCAGGGATGAACTCGAT	NA	False	NA	NA	False	NA	NA	NA	33929712	33900936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
87090	chr8	+	4045	11	NNC	ENSMUSG00000031447.8	novel	2229	9	NA	NA	-596	25257	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1312.44870756918	1239	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCCCGGGGCGCGCGA	NA	False	NA	NA	False	NA	NA	NA	13222584	13250595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13222661_13223626_13223694_13223779_13223951_13224418_13227143_13229322_13229509_13229582_13229759_13236885_13236979_13239621_13239748_13242049_13242209_13250048_13250200_13250479
87092	chr5	+	2526	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	-530	-21	530	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCGAATTTCACTGG	NA	False	NA	NA	False	NA	NA	NA	108048416	108057401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
87093	chr16	+	2276	8	FSM	ENSMUSG00000072419.6	ENSMUST00000232448.2	2447	8	-38	209	-38	-209	multi-exon	FALSE	canonical	3	19	junction_1	195.358069989965	2444	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGGTTGGTTTTTATAT	NA	False	NA	NA	False	NA	NA	NA	48124232	48139877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_48124570_48130639_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
87094	chr6	-	1883	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	118	0	-26	0	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	1474	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1685	False	NA	NA	False	NA	NA	NA	7693136	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
87095	chr10	-	1832	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	-16	-1170	-16	52	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	1145	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTTTACACTGATTCAC	NA	False	NA	NA	False	NA	NA	NA	88520893	88510581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
87097	chr16	+	2155	11	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_10	666.107979234598	1490	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5763	False	NA	NA	False	NA	NA	NA	22926217	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
87098	chrX	-	3297	13	NIC	ENSMUSG00000031297.15	novel	2750	13	NA	NA	-14	70	intron_retention	FALSE	canonical	3	29	junction_12	508.273240983627	466	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAAGTGTCTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	100129640	100122745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100129064_100129193
87099	chr11	-	1002	1	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGGGCTCCACCTCT	NA	False	NA	NA	False	NA	NA	NA	62444037	62443035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62443000_62444000
87100	chr9	+	1352	1	FSM	ENSMUSG00000042293.9	ENSMUST00000048824.9	531	1	-64	-757	-64	757	mono-exon	FALSE	NA	NA	NA	NA	NA	945	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCAGACACACCAGAAGAG	2719	False	NA	NA	False	NA	NA	NA	48406677	48408029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_48406700_48408000
87101	chr1	+	3370	11	NNC	ENSMUSG00000025925.15	novel	2268	10	NA	NA	0	1297	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	310.349480424891	1404	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACGAATAGTATGTTTGAA	NA	False	NA	NA	False	NA	NA	NA	15875880	15915573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144_15915023_15915206
87102	chr19	-	5381	5	NNC	ENSMUSG00000094936.9	novel	1411	4	NA	NA	-4221	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	36.5855162598534	138	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTTTTCAAATTAGGGTA	NA	False	NA	NA	False	NA	NA	NA	4848150	4835195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4847216_4847646
87103	chr8	-	3042	8	NIC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-43	6	intron_retention	FALSE	canonical	3	1341	junction_7	180.507787157479	10970	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTGAGTGTGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	95564936	95549182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_95549836_95550280_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
87104	chr2	-	708	1	FSM	ENSMUSG00000083563.2	ENSMUST00000117219.2	1545	1	905	-68	905	68	mono-exon	FALSE	NA	NA	NA	NA	NA	4	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	NA	False	NA	NA	False	NA	NA	NA	22478754	22478046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_22478000_22478800
87105	chr3	+	2249	7	NNC	ENSMUSG00000039756.13	novel	2429	7	NA	NA	781	-3	intron_retention	TRUE	non_canonical	0	0	junction_6	485.157935338815	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTGTGTGCCTCTTGGAA	NA	False	NA	NA	False	NA	NA	NA	122068847	122078917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705_122078762_122078846
87106	chr5	+	1309	5	Antisense	novelGene_ENSMUSG00000066551.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1672	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTCTCCAGCCAGCGCG	NA	False	NA	NA	False	NA	NA	NA	148985037	148989847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148985723_148986535_148986712_148987104_148987251_148987397_148987562_148989709
87107	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	36	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
87108	chrM	+	795	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	160	2	160	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATATGTCTGATAAAAG	52	False	NA	8	True	NA	NA	NA	2910	3705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2900_3700
87109	chr6	+	2122	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-2	27	-2	-27	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	316	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTTAAAATAAAGACTTT	3732	False	NA	NA	False	NA	NA	NA	117883753	117902553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
87110	chr13	+	1792	14	NNC	ENSMUSG00000021666.17	novel	2542	5	NA	NA	4971	17135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	366	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGTGCCCGGGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	97312927	97334838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97313100_97313306_97313409_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
87111	chr11	+	1761	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	257	4	-18	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	8	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5388	False	NA	NA	False	NA	NA	NA	52251943	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
87112	chr5	+	1112	4	NNC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	7	25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	368.264397772398	187	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGACAAGGTTTCTCTGT	782	False	NA	NA	False	NA	NA	NA	129792588	129795780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129792614_129792747_129792894_129793790_129793931_129794979
87113	chr13	-	3515	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	17	6	7	1	multi-exon	FALSE	canonical	3	331	junction_5	157.730704704606	1220	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAAGGATCTGAGTCAAC	NA	False	NA	NA	False	NA	NA	NA	104314960	104278662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
87114	chr17	+	2260	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	48	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1036.53673992924	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCTCCCAAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	13135409	13143949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136724_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
87115	chr15	+	1962	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	7	-1118	7	1118	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCTCTGGTGTAATAGC	NA	False	NA	NA	False	NA	NA	NA	76788284	76791632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
87116	chr7	-	2977	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	824	-1503	-286	1503	multi-exon	FALSE	canonical	3	351	junction_1	2	1152	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACATGAAATGTATGGAT	NA	False	NA	NA	False	NA	NA	NA	35254905	35245106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35247549_35250878_35251087_35254578
87117	chrM	-	1467	1	Antisense	novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS_novelGene_ENSMUSG00000064358.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	76	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTCAAGGGGTTTTTAC	6798	False	NA	NA	False	NA	NA	NA	9390	7923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7900_9400
87118	chr6	-	494	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	-27	-44	-27	44	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAAAAAAAAAGCCTA	NA	False	NA	NA	False	NA	NA	NA	66852754	66852260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_66852300_66852800
87119	chr1	-	2057	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	34	4	34	0	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	2077	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	135186272	135181316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
87120	chr9	-	2059	4	FSM	ENSMUSG00000039048.16	ENSMUST00000135054.2	528	4	-554	-977	-99	0	multi-exon	FALSE	canonical	3	191	junction_2	22.6028513442196	7587	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	1117	False	NA	NA	False	NA	NA	NA	35118084	35115503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_35116706_35116884_35117015_35117155_35117317_35117518
87121	chr1	+	1612	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-206	-188	-206	188	mono-exon	FALSE	NA	NA	NA	NA	NA	2754	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGAACCGTGAACATTT	NA	False	NA	NA	False	NA	NA	NA	60742884	60744496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60742900_60744500
87122	chr19	+	1947	2	NNC	ENSMUSG00000056201.9	novel	771	3	NA	NA	2001	6	intron_retention	FALSE	non_canonical	0	0	junction_1	0	272	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGGAGCCGAG	NA	False	NA	NA	False	NA	NA	NA	5542593	5545235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5542812_5543506
87123	chr9	+	711	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	73	225	3	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	27	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400582	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
87124	chr4	+	5903	2	Intergenic	novelGene_2026	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	83	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTGTATCTTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	145986545	145992659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_145991045_145991255
87125	chr19	-	3854	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	-11	-2825	-9	1551	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	1901	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATTCCTCCGTCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	41921746	41909179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
87126	chr16	-	564	1	Intergenic	novelGene_3731	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	151	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
87127	chr17	-	3262	4	Intergenic	novelGene_38	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	372	26	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCACCTCTGATTGGCTG	NA	False	NA	NA	False	NA	NA	NA	17427308	17399268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17399712_17422954_17423081_17423322_17423385_17424677
87128	chr17	-	5820	28	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	-3	75027	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.930357137477	1605	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGCCTAGCCTCACAGA	NA	False	NA	NA	False	NA	NA	NA	7050186	6930412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6930608_6940857_6941393_6943608_6943827_6954657_6954723_6967048_6967102_6968634_6968708_6970282_6970358_6973292_6973417_6976494_6976631_6982782_6982962_6995634_6995739_7000348_7000520_7001862_7001969_7002774_7002873_7003808_7004016_7005125_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
87129	chr11	+	2477	2	ISM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	69	-859	41	859	intron_retention	FALSE	canonical	2	12	junction_1	0	41	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTAAAAAAAAATCCGCC	NA	False	NA	NA	False	NA	NA	NA	69512918	69515555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69513159_69513318
87130	chr15	-	3518	17	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	396.74480147823	18	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGATGTGGCTATGATC	NA	False	NA	NA	False	NA	NA	NA	96953837	96892709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96893881_96894288_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
87131	chr7	+	617	7	ISM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	21623	410	21548	-410	3prime_fragment	FALSE	canonical	3	3350	junction_2	240.67243760394	702	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATTGCGTGTAGAATG	NA	False	NA	NA	False	NA	NA	NA	137060965	137069913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
87132	chr9	+	501	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	108	-129	108	129	mono-exon	FALSE	NA	NA	NA	NA	NA	32	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAATCAGTCC	136	False	NA	NA	False	NA	NA	NA	7751833	7752334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_7751800_7752300
87133	chr2	-	2559	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	-18	72	-18	-72	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	1456	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCGCCAGCGGCCAGAGCC	NA	False	NA	NA	False	NA	NA	NA	103315523	103284265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
87134	chr8	-	823	1	FSM	ENSMUSG00000110545.2	ENSMUST00000212486.2	454	1	-241	-128	-241	128	mono-exon	FALSE	NA	NA	NA	NA	NA	214	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GATTTAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	70463893	70463070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70463100_70463900
87135	chr2	+	4123	26	Fusion	ENSMUSG00000017861.12_ENSMUSG00000017858.13	novel	2248	13	NA	NA	-4	-716	multi-exon	FALSE	canonical	2	30	junction_13	1384.61383728461	13	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAATGTGCAGAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	162859406	162925892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122_162887297_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
87136	chr4	-	4176	1	Intergenic	novelGene_1870	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGAACCTCTGGTGGA	NA	False	NA	NA	False	NA	NA	NA	62849545	62845369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_62845400_62849500
87137	chr3	-	5291	9	Antisense	novelGene_ENSMUSG00000025764.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	501	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCGTTGACAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	41571293	41543385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_41543456_41546115_41546273_41548198_41548389_41551048_41551260_41554454_41554631_41555807_41555916_41558901_41559426_41564236_41564354_41567555
87138	chrX	+	1237	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	3	0	-3	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	244	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059303	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
87139	chr16	+	5177	18	Fusion	ENSMUSG00000022516.11_ENSMUSG00000022517.18	novel	3138	17	NA	NA	0	2	intron_retention	FALSE	canonical	3	266	junction_15	65.917742595809	1613	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTTCTGAGTGCCATG	2927	False	NA	NA	False	NA	NA	NA	4704115	4758885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759_4757158_4757241_4757503_4758059
87140	SIRV3	+	2858	7	NIC	SIRV3A	novel	2467	5	NA	NA	-1	975	intron_retention	FALSE	non_canonical	0	0	junction_5	1069.02972622634	953	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCGGCAAAGCGCAATGCG	NA	False	NA	NA	False	NA	NA	NA	1962	9914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755_8967_9189_9325_9667
87141	chr12	+	5037	2	Intergenic	novelGene_4382	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605039	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68606789_68606984
87142	chr16	-	564	1	Intergenic	novelGene_3732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
87143	chr9	+	4931	22	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	-42	19797	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	463.504059966514	2078	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCGCACTGAGCGCGCAC	5470	False	NA	NA	False	NA	NA	NA	35122408	35179066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35129043_35129223_35129285_35132675_35132962_35134909_35135037_35138457_35138694_35146528_35146779_35155908_35156003_35159964_35160027_35179018
87145	chr10	+	551	1	Antisense	novelGene_ENSMUSG00000069682.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTCGGATGAACCCGGA	NA	False	NA	NA	False	NA	NA	NA	29574747	29575298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_29574700_29575300
87146	chr12	+	739	5	Intergenic	novelGene_4422	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	151	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAACCGCGGGCACTGG	NA	False	NA	NA	False	NA	NA	NA	81405797	81579676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_81406121_81521362_81521426_81527706_81527777_81551317_81551411_81579486
87147	chr3	-	1529	6	ISM	ENSMUSG00000027944.14	ENSMUST00000079724.9	1139	7	104	30	27	-19	intron_retention	FALSE	canonical	3	1573	junction_5	159.470373424031	103	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCCTTTATTTATGCT	7294	False	NA	NA	False	NA	NA	NA	89905900	89902782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044
87148	chr11	+	3822	16	NNC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	-2	34956	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	139.434891217689	1775	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTCGCGAGACTTCGCCG	NA	False	NA	NA	False	NA	NA	NA	32176502	32217656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573_32183116_32183902_32184099_32184732_32184924_32186789_32186914_32187295_32187413_32189802_32189954_32191797_32191938_32198146_32198227_32200124_32200278_32203873_32203952_32205440_32205567_32213022_32213095_32217422
87149	chr9	+	2017	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	310	10	-9	-10	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	930	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAAATGCAGACTGCTTT	9867	False	NA	NA	False	NA	NA	NA	106158569	106227710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
87150	chrX	-	5180	17	Antisense	novelGene_ENSMUSG00000000787.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1966	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGGAAACTCGCTTGACT	NA	False	NA	NA	False	NA	NA	NA	13160291	13146724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13147395_13150414_13150475_13151153_13151200_13152270_13152404_13153459_13153623_13153702_13153803_13154023_13154158_13154515_13154602_13154809_13154911_13155018_13155180_13155633_13155782_13156076_13156218_13156414_13156600_13156684_13156802_13157138_13157292_13157399_13157540_13157649
87151	chr3	+	2985	9	NIC	ENSMUSG00000118504.2	novel	1545	10	NA	NA	-178	-14	intron_retention	FALSE	canonical	3	70	junction_7	165.736236230946	9	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCTCTTAAAGGTTCAGA	NA	False	NA	NA	False	NA	NA	NA	89960032	89973165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89970557_89971731_89971862_89972816
87152	chr12	+	4557	1	Intergenic	novelGene_4363	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGCTGCTGTGGCTTAGG	NA	False	NA	NA	False	NA	NA	NA	62591045	62595602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_62591000_62595600
87153	chrX	-	5091	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	-1747	0	1747	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	1194	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACATTTGACAATTCAT	NA	False	NA	NA	False	NA	NA	NA	37665073	37620403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
87155	chr8	+	2546	1	Genic_Genomic	ENSMUSG00000031839.8	novel	NA	NA	NA	NA	1136	4	mono-exon	FALSE	NA	NA	NA	NA	NA	2814	77	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGAATGGTGTGGTCCTTC	NA	False	NA	NA	False	NA	NA	NA	120073119	120075665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_120073100_120075700
87156	chr1	+	4289	13	NNC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	-28622	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.8140840828806	705	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAACCTGGCTTTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	155882526	155929480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155895713_155895770_155898045_155898126_155898893_155898934_155906132_155906180_155907160_155907223_155909474_155909547_155911503_155911838_155916820_155916881_155927039
87158	chr11	+	3265	8	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	0	1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	89.1320964201162	252	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	NA	False	NA	NA	NA	62349285	62406860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729_62405978_62406503
87159	SIRV6	+	1124	8	NNC	SIRV6A	novel	1528	10	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	8521.00169688795	27	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGAGTATACTTAGTTCA	NA	False	NA	NA	False	NA	NA	NA	1087	11832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_1845_1868_3120_3165_10724_10819_11031_11109_11205
87160	chr19	+	2383	1	FSM	ENSMUSG00000044065.4	ENSMUST00000057038.4	906	1	-13	-1464	-13	1464	mono-exon	FALSE	NA	NA	NA	NA	NA	35	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTCAGAAGTTGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	41448238	41450621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41448200_41450600
87161	chr9	+	3618	9	FSM	ENSMUSG00000015354.9	ENSMUST00000015498.9	4438	9	4	816	4	-816	multi-exon	FALSE	canonical	3	281	junction_3	14.5982661641717	940	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGAGCTTTGATCCCA	8379	False	NA	NA	False	NA	NA	NA	95519657	95579333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_95519927_95520704_95520814_95552057_95552314_95560397_95560523_95563585_95563723_95568738_95568894_95574913_95574998_95576676_95576845_95577018
87162	chr2	+	507	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	188	2361	0	5	multi-exon	FALSE	canonical	3	5931	junction_1	722	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGCCTGGTTTGACTGG	NA	False	NA	NA	False	NA	NA	NA	121279863	121281540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_121279923_121280455_121280565_121281201
87163	chrX	+	8083	4	Intergenic	novelGene_3912	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2355	98	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGGGATCCCCTCTGGAA	NA	False	NA	NA	False	NA	NA	NA	34409454	34820344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34411642_34413630_34414040_34740497_34745927_34820286
87164	chr17	-	2792	10	NIC	ENSMUSG00000024045.7	novel	4183	13	NA	NA	-906	3242	intron_retention	FALSE	canonical	3	51	junction_3	212.644083324318	3052	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGCCCTAAACCCAAACC	NA	False	NA	NA	False	NA	NA	NA	32538684	32529585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32529646_32529926_32530069_32531259_32531348_32532078_32532237_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32536321_32536819_32536853_32537744
87166	chr16	+	2321	9	NNC	ENSMUSG00000072419.6	novel	2447	8	NA	NA	-163	-166	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	246.775707880658	2385	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGCTGGTCTTGAGTAT	NA	False	NA	NA	False	NA	NA	NA	48124107	48139920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48124570_48125768_48125865_48130858_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
87167	chr16	+	1909	9	ISM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	587	5	-217	-4	3prime_fragment	FALSE	canonical	3	563	junction_2	514.546387000239	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6660	False	NA	NA	False	NA	NA	NA	22927114	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
87168	chr4	-	2532	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	448	0	0	0	3prime_fragment	FALSE	canonical	3	774	junction_12	215.450595691155	9203	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484690	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
87169	chr15	+	5975	31	Fusion	ENSMUSG00000071586.5_ENSMUSG00000023048.14_ENSMUSG00000056851.15	novel	3222	14	NA	NA	12	6737	multi-exon	FALSE	non_canonical	0	0	junction_16	216.111928304653	245	15	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGAGTGGAAGGGGTTACT	2417	False	NA	NA	False	NA	NA	NA	102367648	102419058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_+_102367691_102368542_102368582_102368804_102369155_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923_102408614_102408944_102409202_102409283_102409358_102409535_102410164_102410270_102410409_102410501_102410618_102410749_102410859_102411070_102411180_102411922_102412086_102412162_102412322_102412552_102412741_102412903_102413091_102413526_102414006_102417727_102417814_102418353_102418447_102419022
87170	chr5	-	4004	28	Fusion	ENSMUSG00000029730.17_ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	-2582	intron_retention	FALSE	non_canonical	0	0	junction_1	342.867937399476	649	89	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGCCCCTTGTCATTCAA	1952	False	NA	NA	False	NA	NA	NA	138185488	138170254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_138170509_138170602_138170740_138171046_138171155_138171232_138171330_138173010_138173122_138173204_138173279_138174163_138174280_138174469_138174524_138174871_138174979_138175076_138175173_138175416_138175462_138176182_138176233_138176330_138176440_138176536_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
87171	chr9	-	1829	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	23	468	2	-468	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	14	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCATTGTTATAGTAAA	NA	False	NA	NA	False	NA	NA	NA	100916928	100864552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
87172	chr4	-	7037	4	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	194	104	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAATGGTGGAACTTCC	NA	False	NA	NA	False	NA	NA	NA	147422382	147390084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147390230_147409227_147409333_147413436_147413565_147415723
87173	chr7	-	1222	3	FSM	ENSMUSG00000050708.17	ENSMUST00000211500.2	825	3	-376	-21	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	6244.5	1647	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109263	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507
87174	chr8	-	3908	5	NIC	ENSMUSG00000055553.17	novel	1216	5	NA	NA	1530	1737	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	289.113299590316	50	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTTTGAGTGGGTAGGGA	NA	False	NA	NA	False	NA	NA	NA	70974210	70964308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70973137
87175	chr3	-	1275	4	Antisense	novelGene_ENSMUSG00000037894.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGTCTCCCGCCTTCCTCG	NA	False	NA	NA	False	NA	NA	NA	137572680	137570349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_137570457_137570892_137571399_137571775_137571913_137572155
87176	chrM	+	2519	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	-1	multi-exon	FALSE	canonical	0	0	junction_1	0	118	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATATGTCTGATAAAAGA	-3	True	NA	22	True	NA	NA	NA	1093	3706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3387_3480
87177	chr13	-	2580	9	NNC	ENSMUSG00000021711.18	novel	3538	12	NA	NA	23178	-375	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	340.581029272037	438	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGTTCTAAAAAATATA	NA	False	NA	NA	False	NA	NA	NA	104291737	104279038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104279585_104279643_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104291516
87178	chrM	+	758	2	Genic_Genomic	ENSMUSG00000064357.1	novel	681	1	NA	NA	-161	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-11	True	NA	NA	False	NA	NA	NA	7765	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_7935_8018
87179	chr11	+	1166	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-94650	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17708.5	269	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATATATGGTGTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	62347346	62444034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62347354_62442331_62442422_62442965
87180	chrM	+	2673	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-56	-1035	-56	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1401	69	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	344	False	NA	-34	True	NA	NA	NA	1037	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_3700
87181	chr5	+	1038	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-22	-212	at_least_one_novel_splicesite	FALSE	canonical	2	70	junction_2	5989.86292043111	19	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698859_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
87182	chr5	+	2133	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	0	3	0	0	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	801	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCGGTGTGCCGACTATT	NA	False	NA	NA	False	NA	NA	NA	114268986	114277379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
87183	chr7	-	815	7	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	0	intron_retention	FALSE	canonical	1	3	junction_3	6340.48617133488	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775457_44775538_44775662_44775901_44776003_44776132_44776219_44776414_44776699_44776919_44776993_44778123
87184	chr12	+	4534	13	NNC	ENSMUSG00000021115.16	novel	1509	13	NA	NA	-2	887	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	279.190794977198	8	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTGTCATGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	105976484	106044572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976548_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
87185	chr10	-	2198	12	NNC	ENSMUSG00000061032.10	novel	1984	13	NA	NA	-213	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	278.451176781927	1004	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGCTGCTTCTCCCA	NA	False	NA	NA	False	NA	NA	NA	78249090	78236222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78236819_78237683_78237803_78238421_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
87186	chr15	-	2779	17	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	55	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	396.74480147823	1182	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGCTATGATCTTCT	NA	False	NA	NA	False	NA	NA	NA	96953782	96892705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96892789_96893884_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
87187	chr7	-	4253	5	ISM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	-62	1305	-9	-1305	5prime_fragment	FALSE	canonical	3	753	junction_1	24.5089269450949	15	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATTAAAAAAAA	5723	False	NA	NA	False	NA	NA	NA	33896095	33885362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
87188	chr11	+	2341	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-1302	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	266.148872291848	666	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	57993676	58009420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_57994039_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
87189	chr17	-	2054	10	Fusion	ENSMUSG00000036775.14_ENSMUSG00000024177.10	novel	2224	9	NA	NA	7	-13	multi-exon	FALSE	canonical	0	0	junction_8	78.8563313098848	47	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAGAAAAAAAATTGACTG	NA	False	NA	NA	False	NA	NA	NA	26314440	26300216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26313110_26313245_26314338
87190	chr18	+	2143	11	NIC	ENSMUSG00000009535.14	novel	965	5	NA	NA	49	-1	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	335.57288329065	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACTGCAATTCTGAGACT	NA	False	NA	NA	False	NA	NA	NA	68433541	68454976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_68433695_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
87191	chr1	-	2747	6	Antisense	novelGene_ENSMUSG00000026254.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.8	93	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCCGCTCTACCGGGTC	135	False	NA	NA	False	NA	NA	NA	87156001	87141685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87141742_87147302_87147416_87148639_87148775_87152072_87152178_87153569_87153723_87153816
87192	chr4	+	2306	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	72	-84	17	84	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGCTGGCTTATAGTCAT	NA	False	NA	NA	False	NA	NA	NA	116542812	116558103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
87193	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
87194	chr9	-	1503	1	Antisense	novelGene_ENSMUSG00000032329.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCACTGTTGGTATTTCTC	NA	False	NA	NA	False	NA	NA	NA	56398634	56397131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_56397100_56398600
87195	chr11	-	5499	2	Intergenic	novelGene_2327	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	417	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57451228	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450383_57450476
87196	chr18	-	945	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	35	-15	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	276	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTGAAAAAAAAAAAAAAAAA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
87197	chr9	-	3939	12	FSM	ENSMUSG00000032113.17	ENSMUST00000172702.9	3797	12	-191	49	5	-49	multi-exon	FALSE	canonical	3	367	junction_7	38.0821209215597	514	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCCAAATACTGTGATTA	741	False	NA	NA	False	NA	NA	NA	36637861	36619826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092
87198	chrM	+	674	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-29	36	-29	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	16	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTAGTAAGCCTATATCT	121	False	NA	NA	False	NA	NA	NA	7897	8571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7900_8600
87199	chr3	-	934	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	29	-78	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	11	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGGTTGGAGCCACCACT	NA	False	NA	NA	False	NA	NA	NA	149779257	149778323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778300_149779300
87200	chr11	-	3126	6	Antisense	novelGene_ENSMUSG00000020149.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1844	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCGCCCTGAACGCATGC	NA	False	NA	NA	False	NA	NA	NA	20176992	20151268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_20151653_20165629_20165703_20168812_20168909_20173083_20173178_20174364_20174497_20174645
87201	chr18	-	3671	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	40	-2	40	2	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	112	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTGCTTGAGATTTT	NA	False	NA	NA	False	NA	NA	NA	35065020	35035835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
87202	chrX	+	2781	5	FSM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	-249	0	-249	0	multi-exon	FALSE	canonical	3	188	junction_1	39.4865483424419	846	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	NA	False	NA	NA	NA	141009516	141022688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_141009928_141011286_141011378_141012519_141012607_141019779_141019925_141020641
87203	chr2	+	1469	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	72	0	6	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8619	False	NA	NA	False	NA	NA	NA	61542109	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
87204	chr1	-	1117	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGCGGCGAAGGTGGCT	9064	False	NA	NA	False	NA	NA	NA	86458415	86454527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
87205	chrX	+	2378	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-46	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1047.41860927499	702	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491569_100491614
87206	chr4	+	3371	12	NNC	ENSMUSG00000040945.14	novel	3999	15	NA	NA	2403	-5	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	1322.08953698365	2013	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCGTTGGCTTTCATGA	4784	False	NA	NA	False	NA	NA	NA	140431186	140450526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140431263_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
87207	chr12	+	3301	11	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	8	0	intron_retention	FALSE	canonical	3	13	junction_2	243.721747080559	13	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	397	False	NA	NA	False	NA	NA	NA	109609272	109628150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109609896_109611695_109611766_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
87208	chr12	+	3678	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	40	-2209	-15	3	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	1461	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTATTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	105976526	106043688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
87209	chr7	+	1427	8	NNC	ENSMUSG00000063229.16	novel	685	5	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3731.58401557651	1	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495248	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495256_46497019_46497170_46498396_46498515_46499690_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
87210	chr7	+	4522	9	Fusion	ENSMUSG00000045752.14_ENSMUSG00000037706.18	novel	1533	8	NA	NA	-6	0	intron_retention	FALSE	canonical	3	124	junction_8	2055.94905092514	704	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	142606524	142624824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048_142623558_142623672
87211	chr2	+	2147	1	Antisense	novelGene_ENSMUSG00000039671.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	477	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTGAGTTAATTAACTCC	NA	False	NA	NA	False	NA	NA	NA	165654574	165656721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165654600_165656700
87212	chr8	+	1209	4	FSM	ENSMUSG00000037296.8	ENSMUST00000038421.8	2663	4	12	1442	12	409	multi-exon	FALSE	canonical	3	365	junction_2	35.9660333586504	1406	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGAGTTTCTGGTGGA	8452	False	NA	NA	False	NA	NA	NA	26275327	26292561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_26275746_26282184_26282254_26283704_26283821_26291955
87213	chr17	+	1807	4	NNC	ENSMUSG00000023067.15	novel	1913	3	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	584.097214130966	8	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4653	False	NA	NA	False	NA	NA	NA	29312748	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29312836_29317370_29317437_29317536_29317812_29318317
87214	chr17	+	1378	5	FSM	ENSMUSG00000060586.12	ENSMUST00000235501.2	782	5	-348	-248	-348	1	multi-exon	FALSE	canonical	3	177	junction_1	12.5896783120142	78	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	34528200	34535174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
87215	chr5	-	5028	27	Fusion	ENSMUSG00000107283.4_ENSMUSG00000106864.4	novel	2328	9	NA	NA	19	-9	multi-exon	TRUE	non_canonical	0	0	junction_8	201.163715010154	6	65	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAATCAAACAAGAATT	NA	False	NA	NA	False	NA	NA	NA	31337234	31298015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534_31311619_31315483_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331835_31336590
87216	chr8	-	611	5	FSM	ENSMUSG00000045128.10	ENSMUST00000054220.10	1260	5	0	649	0	8	multi-exon	FALSE	canonical	3	16397	junction_4	7934.97659101777	5276	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTCTATGTCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	71350056	71348014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71350002
87217	chr5	+	4495	11	NNC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	12894	23383	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8.4	1418	30	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGCGGAGGGATCTC	NA	False	NA	NA	False	NA	NA	NA	4130366	4154693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_4131176_4131341_4133307_4136462_4136636_4137782_4137874_4141844_4142037_4142380_4142507_4149122_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
87218	chr19	+	864	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	58	7	0	-1	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	629	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTCTTTTCTTTGTGAT	4927	False	NA	NA	False	NA	NA	NA	9960067	9962455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
87219	chr17	-	2997	7	NNC	ENSMUSG00000002076.13	novel	1479	7	NA	NA	6	68	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_6	475.574973643016	33	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACTTTCGAGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	32253476	32163674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253246
87220	chr14	-	2375	18	NNC	ENSMUSG00000040472.16	novel	2882	17	NA	NA	4	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	151.232216776067	99	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAGCTTTCTCACCGGG	NA	False	NA	NA	False	NA	NA	NA	55959655	55953326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958635_55958683_55958718_55959051_55959163_55959300_55959358_55959509
87221	chr1	+	1425	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATAAGTTTAACTAGTCA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653600
87222	chr13	+	862	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	-23	-44	-23	44	mono-exon	FALSE	NA	NA	NA	NA	NA	40	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAAAAAAAAAATGCAGTT	NA	False	NA	NA	False	NA	NA	NA	108807113	108807975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108807100_108808000
87223	chr2	+	7006	14	Fusion	ENSMUSG00000078879.11_ENSMUSG00000078878.10_ENSMUSG00000078877.12	novel	1646	5	NA	NA	3231	116576	multi-exon	TRUE	non_canonical	0	0	junction_1	10.944723945743	234	57	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAAGCTTGACCTGGAAG	NA	False	NA	NA	False	NA	NA	NA	176365603	176619592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_176365791_176370328_176370456_176411081_176411143_176412300_176412423_176412590_176412832_176501567_176501886_176502809_176503368_176515452_176515886_176570617_176571243_176605293_176609304_176610458_176610519_176610723_176610852_176615990_176616047_176619512
87224	chr12	+	3943	25	NNC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-3958	-9	intron_retention	FALSE	canonical	0	0	junction_1	295.70734112839	21	34	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTATGACTAAAAAAAGTGT	350	False	NA	NA	False	NA	NA	NA	109566283	109628134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109566374_109570201_109570270_109570371_109570501_109572647_109572778_109573847_109573931_109583607_109583784_109586746_109586835_109591534_109591610_109593481_109593588_109604272_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611695_109611766_109612280_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
87225	chr15	+	1221	2	NNC	ENSMUSG00000022463.9	novel	1981	4	NA	NA	71	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	67	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGT	2314	False	NA	NA	False	NA	NA	NA	82031522	82058093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031604_82056953
87226	chrX	-	2268	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	-52	0	-23	0	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	951	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	51702850	51361302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
87227	chr1	-	5203	5	Antisense	novelGene_ENSMUSG00000038147.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	116	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	171720403	171684842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171686306_171688048_171688439_171688516_171690098_171690154_171690470_171718949
87228	chrM	+	635	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	509	0	509	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	4	True	NA	37	True	NA	NA	NA	14653	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14700_15300
87229	chr10	-	1440	2	Antisense	novelGene_ENSMUSG00000078427.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5267	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCCACCGGACCCCCACC	3637	False	NA	NA	False	NA	NA	NA	128701430	128657792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_128659158_128701355
87230	chr11	-	3231	11	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-22	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1274.31785673748	1	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCATTCTCTTCATTTAT	9594	False	NA	NA	False	NA	NA	NA	106679380	106671186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676092_106677156_106677186_106677273_106677371_106677734_106677901_106679098
87231	chr3	-	1134	5	NIC	ENSMUSG00000028081.7	novel	977	6	NA	NA	109	-5	intron_retention	FALSE	canonical	3	3673	junction_2	2723.82295680171	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049900	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86049109_86049814
87232	chrM	+	650	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	494	0	494	0	mono-exon	FALSE	NA	NA	NA	NA	NA	109	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-11	True	NA	22	True	NA	NA	NA	14638	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14600_15300
87233	chr2	-	4895	8	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	13	1271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	159.593616567141	459	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATGCCAATGCA	NA	False	NA	NA	False	NA	NA	NA	121337133	121321120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121323366_121323926_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
87234	chr5	-	1879	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	32	9	0	-9	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	1518	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAACAGCTTGTGGCTC	8921	False	NA	NA	False	NA	NA	NA	142892477	142888878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
87235	chr14	-	1400	3	NIC	ENSMUSG00000040472.16	novel	2435	15	NA	NA	409	-4	intron_retention	FALSE	canonical	3	495	junction_1	14.5	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTTTAAGAAAAGAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	55956194	55953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55953996_55954624_55955075_55955902
87236	chr15	-	3382	6	NNC	ENSMUSG00000022285.18	novel	2285	6	NA	NA	-50	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1680.76906206653	12	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	1813	False	NA	NA	False	NA	NA	NA	36792708	36771019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36792017
87237	chr11	+	1164	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	2	-172	-2	multi-exon	FALSE	canonical	3	35417	junction_1	0	14343	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
87238	chr2	-	5354	21	Fusion	ENSMUSG00000056718.3_ENSMUSG00000039128.14	novel	1827	13	NA	NA	-7864	3	multi-exon	FALSE	non_canonical	0	0	junction_13	530.243271998806	3878	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTCTGGTTCATT	NA	False	NA	NA	False	NA	NA	NA	5875609	5799101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645_5850195_5859624_5859728_5860788_5860857_5865835_5865887_5867110_5867217_5868386_5868484_5869155_5869269_5871161_5871218_5872898
87239	chr9	-	569	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	-40	-57	-40	57	mono-exon	FALSE	NA	NA	NA	NA	NA	597	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGACTGGGGGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	115870172	115869603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_115869600_115870200
87240	chr11	-	1120	10	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	1584	223	1450	0	3prime_fragment	FALSE	canonical	3	16927	junction_8	1793.60603736828	19581	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111622	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547
87241	chr1	+	1208	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	12	-4	-12	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	3	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454443	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
87242	chr18	-	2288	11	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	39	-1342	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	338.584775204084	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGATGATTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	35065021	35037179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064926
87243	chrM	+	3829	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064338.1_ENSMUSG00000064345.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	13	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	344	False	NA	-34	True	NA	NA	NA	1037	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_4193_4276
87244	chr3	-	9121	45	Fusion	ENSMUSG00000106218.2_ENSMUSG00000068922.15	novel	1875	14	NA	NA	-17	9737	multi-exon	FALSE	non_canonical	0	0	junction_1	336.445287233531	1548	27	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGAGGCCCGCTCTGATCC	NA	False	NA	NA	False	NA	NA	NA	88821255	88742594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_88742857_88744293_88744826_88753692_88753886_88761907_88762103_88762932_88763008_88763121_88763172_88763724_88763774_88764431_88764532_88765691_88765812_88766193_88766363_88770722_88770919_88776055_88776158_88777107_88777160_88787369_88787487_88794217_88794409_88794862_88794953_88796977_88797144_88798117_88798265_88799824_88799976_88801748_88801864_88802124_88803877_88805409_88805666_88806194_88806390_88807240_88807435_88808884_88809027_88810061_88810206_88810286_88810407_88812756_88812868_88814676_88814887_88815292_88815912_88815991_88816095_88816542_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
87245	chr9	+	3732	10	NIC	ENSMUSG00000031939.17	novel	1210	11	NA	NA	58	-2	intron_retention	FALSE	canonical	3	12	junction_1	185.015381409289	2	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCTTTTATAGTTTGTA	9245	False	NA	NA	False	NA	NA	NA	15217682	15228270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217934_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15226428_15226678
87246	chrX	-	5140	23	FSM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	-3	-2047	-3	1747	multi-exon	FALSE	non_canonical	3	112	junction_22	288.723912992818	1036	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCACATTTGACAATTCAT	NA	False	NA	NA	False	NA	NA	NA	37665063	37620403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37664956
87247	chr14	-	2381	9	NNC	ENSMUSG00000060373.16	novel	2617	9	NA	NA	-4	-20	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1321.75956942819	10	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACCTGTTTAAATAT	8780	False	NA	NA	False	NA	NA	NA	52341430	52311021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52311737_52311894_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
87248	chr5	-	2109	15	NNC	ENSMUSG00000029703.11	novel	2473	15	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	98.6592000530211	8496	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGGAGGCCAGTGGGAA	6750	False	NA	NA	False	NA	NA	NA	136164862	136151927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164721
87249	chr15	-	3079	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	-61	7	-51	-7	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	1123	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTTTGAGTTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	94487821	94475838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
87250	chr10	-	4599	1	Intergenic	novelGene_3558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	364	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTCCGGTCCAGACGGT	NA	False	NA	NA	False	NA	NA	NA	122075612	122071013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_122071000_122075600
87251	chr17	+	1315	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1258	0	5	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	104	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTTTTCCTTGCACAC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
87252	chrX	-	5152	24	Fusion	ENSMUSG00000031095.16_ENSMUSG00000048970.10	novel	3344	23	NA	NA	-27	1658	multi-exon	FALSE	non_canonical	3	17	junction_23	385.242024926378	10	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGGAAGATATTT	NA	False	NA	NA	False	NA	NA	NA	37723991	37620492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37675688_37675760_37723854
87253	chr6	-	2403	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	26	-254	0	254	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	81	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTATGTTATGCTACATAG	NA	False	NA	NA	False	NA	NA	NA	87828062	87819342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
87254	chr16	-	4984	33	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	27	28350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2420.38102549862	12300	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAACGCGGCATTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	87292720	87251863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255629_87258850_87259026_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87269057_87269994_87270072_87271467_87271562_87272304_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280606_87280714_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
87255	chr15	+	3814	17	Antisense	novelGene_ENSMUSG00000022464.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1717	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAGGGTTAGACCGGGAG	NA	False	NA	NA	False	NA	NA	NA	96892702	96953782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96894136_96894203_96894972_96896322_96896421_96897368_96897515_96903700_96903825_96906292_96906395_96906538_96906621_96906744_96907016_96907823_96907886_96907994_96908083_96908168_96908247_96910780_96910872_96911313_96911393_96914008_96914125_96914641_96914733_96917604_96917742_96953734
87256	chrM	+	1049	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	-2	True	NA	87	True	NA	NA	NA	14144	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14153_14246
87258	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
87259	chr11	-	1088	10	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	1616	223	1482	0	3prime_fragment	FALSE	canonical	3	16927	junction_8	1793.60603736828	699	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111590	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547
87260	chr5	+	1887	9	FSM	ENSMUSG00000037720.17	ENSMUST00000160352.8	5322	9	-14	3449	-13	1353	multi-exon	FALSE	canonical	3	67	junction_8	122.604483502847	304	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTACAAGATGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	67418025	67445355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438_67443560_67444352
87261	chr1	-	1517	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-734	0	-734	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	False	NA	NA	False	NA	NA	NA	24653786	24652269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653800
87262	chr17	+	2208	2	Antisense	novelGene_ENSMUSG00000096780.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	234	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGACATAACAAAACCCAGCT	NA	False	NA	NA	False	NA	NA	NA	6723948	6727628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_6724528_6725999
87263	chr7	-	3619	7	NNC	ENSMUSG00000040435.13	novel	2333	3	NA	NA	44	3322	intron_retention	FALSE	non_canonical	0	0	junction_1	184.892761711575	1177	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAGGGGTGTGGCTTAGC	3905	False	NA	NA	False	NA	NA	NA	45175648	45169017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45169266_45170161_45170279_45170366_45170466_45171267_45171440_45171646_45172747_45173162_45174816_45175418
87264	chr13	-	1610	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	6	-938	6	938	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	1432	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGTTTAAAAAAAAAGTTGC	NA	False	NA	NA	False	NA	NA	NA	108295151	108188184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
87265	chrX	-	5219	20	FSM	ENSMUSG00000031095.16	ENSMUST00000016681.15	3354	20	-134	-1731	3	1731	multi-exon	FALSE	non_canonical	3	1064	junction_17	109.947758937101	90	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAATGACTTCCTTAATTC	8158	False	NA	NA	False	NA	NA	NA	37653536	37620419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539
87266	chr1	-	6417	25	Fusion	ENSMUSG00000026037.15_ENSMUSG00000026035.16	novel	3561	18	NA	NA	-2	-7	multi-exon	FALSE	non_canonical	0	0	junction_7	240.55364382099	1521	47	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATCACATGTGAGTGTC	NA	False	NA	NA	False	NA	NA	NA	58544086	58470162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490_58484791_58486789_58487248_58489544_58489707_58491245_58491373_58494753_58494892_58496935_58497020_58500296_58503304_58508914_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
87267	chrX	+	18433	12	Intergenic	novelGene_3907	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7556	441	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGAACGTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	34068593	34745841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34073205_34409134_34413652_34414049_34414544_34426872_34427356_34588347_34588523_34588630_34588840_34589155_34589898_34589934_34590789_34590853_34591241_34591457_34591749_34591847_34592147_34740470
87268	chr7	-	2052	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	55	-1000	-2	1000	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	950	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTTGAAAGCAATTGAGA	NA	False	NA	NA	False	NA	NA	NA	132454347	132428185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
87269	chr5	+	2684	2	NNC	ENSMUSG00000041733.11	novel	954	5	NA	NA	12602	3640	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTTTGATCACCGCCTT	2278	False	NA	46	True	NA	NA	NA	115434308	115438671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115436892_115438570
87270	chr17	-	1223	1	Intergenic	novelGene_174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1338	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTACCTTCTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	40155110	40153887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_40153900_40155100
87271	chrM	+	1120	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	24	0	24	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	22	False	NA	-99	True	NA	NA	NA	14168	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
87272	chr3	-	2275	20	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	262	5	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCACTGTGGAGTAGTCG	NA	False	NA	NA	False	NA	NA	NA	151938409	151916254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916336_151919611_151919703_151921226_151921268_151923045_151923084_151923469_151923520_151923609_151923684_151923848_151923907_151925318_151925482_151925567_151925667_151925770_151925875_151926101_151926203_151926320_151926422_151926901_151927044_151927718_151927881_151928464_151928618_151928922_151929001_151931714_151931854_151933806_151933882_151937512_151937658_151938029
87273	chr12	+	3230	10	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	549	junction_7	35.1002092779804	1622	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	2865	False	NA	NA	False	NA	NA	NA	109612563	109628150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
87274	chr2	-	3843	11	Fusion	ENSMUSG00000015790.17_ENSMUSG00000014867.10	novel	3281	6	NA	NA	-89	-951	multi-exon	FALSE	non_canonical	0	0	junction_1	412.887393849703	2159	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGCCGCAGCCACCACGTG	NA	False	NA	NA	False	NA	NA	NA	26823484	26806419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_26806514_26806714_26806876_26807443_26807544_26808884_26809068_26809203_26809369_26809736_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
87275	chr12	-	1373	1	Intergenic	novelGene_4284	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAATGTAGAAAAAAACTA	4433	False	NA	NA	False	NA	NA	NA	3336927	3335554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_3335600_3336900
87276	chrX	-	833	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-39	-44	39	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGCTTTCATTAATAG	NA	False	NA	NA	False	NA	NA	NA	68649895	68649062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68649100_68649900
87277	chr15	-	770	4	NNC	ENSMUSG00000063480.9	novel	2077	3	NA	NA	-1	141	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1489.9906785689	58	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGCAGCTGTGCCTGATT	4924	False	NA	NA	False	NA	NA	NA	81931781	81925537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81925860_81926336_81926570_81928097_81928219_81931687
87278	chr2	-	4133	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	25	1037	intron_retention	FALSE	non_canonical	2	766	junction_1	4159.7041492605	296	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACTGTCCCACACCCAG	3657	False	NA	NA	False	NA	NA	NA	154734830	154712292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
87279	chr11	-	1534	15	Fusion	ENSMUSG00000057113.14_ENSMUSG00000083303.2	novel	1633	11	NA	NA	5	96	multi-exon	FALSE	non_canonical	0	0	junction_1	8985.68578833773	15372	33	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGCATAAAAATTTAGCTC	NA	False	NA	NA	False	NA	NA	NA	33113067	32830265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_32830281_32830468_32830703_32917143_32917150_33026380_33026392_33102512_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87280	chr11	+	2453	12	FSM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	37	11	37	-11	multi-exon	FALSE	canonical	3	513	junction_10	36.2694234084327	867	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGATATGGATGACCATAA	NA	False	NA	NA	False	NA	NA	NA	78219277	78233597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
87281	chr1	-	4249	1	Intergenic	novelGene_472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCGAAGAAGAAGGCCCAA	NA	False	NA	NA	False	NA	NA	NA	158164529	158160280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_158160300_158164500
87282	chr16	-	3049	7	NNC	ENSMUSG00000013089.16	novel	3975	13	NA	NA	-839	-52	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_6	376.188080914617	2	145	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCGAGCTGCGTATATTC	NA	False	NA	NA	False	NA	NA	NA	22221418	22200117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22221354
87283	chr1	-	3629	12	Antisense	novelGene_ENSMUSG00000051223.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2547	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCGGAACTAACGCGAGCA	NA	False	NA	NA	False	NA	NA	NA	58446513	58432304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_58432375_58433359_58433433_58436832_58437011_58438161_58438256_58439235_58439302_58439863_58440000_58440270_58440382_58440498_58440671_58442045_58442190_58442770_58442911_58443388_58443513_58444192
87284	chr2	-	4069	25	FSM	ENSMUSG00000027379.15	ENSMUST00020183811.1	3418	25	-11	-640	-5	640	multi-exon	TRUE	canonical	0	0	junction_18	145.15221297161	135	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTGATAAACATCTGGGC	NA	False	NA	NA	False	NA	NA	NA	127673790	127642395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
87285	chrM	-	3327	2	Genic_Genomic	ENSMUSG00000064368.1	novel	519	1	NA	NA	-1218	1810	multi-exon	FALSE	canonical	0	0	junction_1	0	892	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTGGATTTGCA	900	False	NA	60	True	NA	NA	NA	15288	11741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_13938_14157
87286	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	83	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
87287	chr2	+	8061	35	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	12	49845	intron_retention	FALSE	non_canonical	0	0	junction_1	399.581507940357	1	87	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGAAGAGCGGCTCGGG	NA	False	NA	NA	False	NA	NA	NA	166747990	166838154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748055_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623_166791277_166791660_166791749_166792149_166792272_166792698_166793016_166793185_166793266_166794241_166794395_166795129_166795268_166801936_166802038_166805344_166805517_166806501_166806638_166837953
87288	chr17	+	1010	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	35	23	-9	-23	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGTTGGTTTGCTTG	NA	False	NA	NA	False	NA	NA	NA	26342508	26345564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
87289	chr1	-	830	5	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-50097	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	933.140497192143	388	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCACTGCTCAGGTCTT	4183	False	NA	NA	False	NA	NA	NA	4906059	4846602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854274_4906041
87290	chr10	+	2439	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	17	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	3071	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	NA	False	NA	NA	NA	21870581	21875802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
87291	chr18	-	3619	12	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	324.042441868702	1336	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	NA	NA	NA	35065029	35035837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35037138_35037196_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
87292	chr17	+	4665	6	Antisense	novelGene_ENSMUSG00000117582.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3136	56	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGGGTTACACCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	95122165	95174341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_95126056_95126134_95126450_95127762_95127820_95128036_95128135_95172598_95172624_95174061
87293	chr14	-	2386	16	NIC	ENSMUSG00000040472.16	novel	1886	17	NA	NA	23	-3	intron_retention	FALSE	canonical	3	119	junction_15	118.381792894384	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTAAGAAAAGAAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	55959691	55953336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
87294	chr19	-	847	4	Antisense	novelGene_ENSMUSG00000024661.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGCAGGAGGGGACAGCGG	2196	False	NA	NA	False	NA	NA	NA	9962438	9960067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_9960347_9961543_9961690_9961921_9962050_9962144
87295	chr2	+	2371	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCTCCTCTCAAACGTTG	NA	False	NA	NA	False	NA	NA	NA	154713385	154734761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726361_154729617_154729717_154730093_154730285_154734632
87296	chrM	+	2184	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1224	-3	-1224	3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	30	False	NA	10	True	NA	NA	NA	1526	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3700
87297	chr6	-	1332	9	ISM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	45	2092	45	-1791	5prime_fragment	FALSE	canonical	3	8132	junction_4	264.972050412869	43	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGGCCGACCGCACTACTG	5	True	NA	NA	False	NA	NA	NA	7693209	7677260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
87298	chr7	+	645	7	ISM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	21598	407	21523	-407	3prime_fragment	FALSE	canonical	3	3350	junction_2	240.67243760394	667	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	137060940	137069916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
87299	chr16	+	7779	20	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	12636	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	418.551393138359	27	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATTTCCTTTTGATTGC	2157	False	NA	NA	False	NA	NA	NA	48312630	48451271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48317300_48317753_48318727_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
87300	chr7	+	733	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	28	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
87301	chr8	+	2435	17	NNC	ENSMUSG00000060038.15	novel	1333	9	NA	NA	-30	5547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	123.177701284567	1251	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTATTGTCCCCCAGGA	NA	False	NA	NA	False	NA	NA	NA	85798355	85807338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562_85801972_85802450_85802565_85802650_85802761_85802844_85802914_85806209_85806339_85806420_85806467_85806748_85806855_85806941_85807063_85807141
87302	chr2	+	7614	9	NNC	ENSMUSG00000078876.11	novel	408	4	NA	NA	3747	349395	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	6.94509719154455	376	107	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAATAAATAGAATTTT	5659	False	NA	NA	False	NA	NA	NA	176526679	176877918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176526806_176526998_176527286_176527408_176528504_176650805_176651189_176651779_176653024_176675302_176678699_176790074_176790450_176858589_176858758_176877378
87303	chr3	-	5346	17	NNC	ENSMUSG00000027679.14	novel	2499	6	NA	NA	7637	35929	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	452	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGAGATTCTAGAAACTT	NA	False	NA	NA	False	NA	NA	NA	34126692	34074239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_34074311_34093673_34093729_34095211_34095304_34100178_34100251_34100583_34100735_34101114_34101208_34101779_34101898_34103301_34103471_34104221_34104302_34108369_34108479_34110476_34110564_34112170_34112230_34112314_34112385_34115980_34116180_34118266_34118467_34122307_34122400_34123063
87304	chr11	+	1820	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	0	-73	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	87	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
87305	chrM	+	785	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	27	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-2	True	NA	NA	False	NA	NA	NA	8606	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_8600_9400
87306	chr16	-	4514	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-40	412	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	1445	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGAGATGCTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	16176863	16129681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
87308	chrX	-	4384	2	Intergenic	novelGene_4103	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGCTGCTGTGGCTTAGG	NA	False	NA	NA	False	NA	NA	NA	163403610	163399010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_163399018_163399233
87309	chr12	+	2359	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	-10	1362	-1	655	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	2697	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGTTTATGAACAATTTC	NA	False	NA	NA	False	NA	NA	NA	105976540	106042323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
87310	chr13	-	2019	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	6	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTATTTTTGGTGGTCTTT	4766	False	NA	NA	False	NA	NA	NA	58550315	58539768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
87311	chr11	+	5167	26	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	-79	183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.823200808329	1	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACAGTGGCCCTAGAAA	NA	False	NA	NA	False	NA	NA	NA	23205961	23247780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206644_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
87312	chr10	-	3028	14	NNC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-6282	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	525.531728474253	1930	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	4801	False	NA	NA	False	NA	NA	NA	80640742	80631932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914_80634638_80637027_80637191_80637287_80637360_80638229_80638279_80638625_80638734_80639291_80639342_80639414_80639556_80639651_80639721_80639803
87313	chr1	+	985	7	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1529.98046465379	5	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCTCTTCATTTTGCT	NA	False	NA	NA	False	NA	NA	NA	63216282	63218816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217050_63217207_63217368_63217597_63217725_63217990_63218058_63218406_63218533_63218616
87314	chr13	+	1565	2	Genic_Genomic	ENSMUSG00000052565.8_ENSMUSG00000036181.3	novel	1560	1	NA	NA	1774	-8	multi-exon	FALSE	non_canonical	0	0	junction_1	0	965	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCACTGTTGGACTCT	15	False	NA	NA	False	NA	NA	NA	23739209	23924342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_23739266_23922833
87315	chr5	-	2001	5	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	-55	742	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	3602.12222169099	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTAATCAGGTTTAAT	8449	False	NA	NA	False	NA	NA	NA	148988165	148984295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148988077
87316	chr6	+	3917	3	Intergenic	novelGene_4153	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	754	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCCTAACTCGCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	47158272	47167373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_47161995_47165801_47165960_47167336
87317	chr5	+	703	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	44	729	4	-43	5prime_fragment	FALSE	canonical	3	7748	junction_1	3498.23972877789	6	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGAAGCAGCTGCGCAA	NA	False	NA	NA	False	NA	NA	NA	121342587	121346575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453
87318	chr1	+	2966	3	NNC	ENSMUSG00000042229.10	novel	2861	2	NA	NA	-94	212	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	239.5	1293	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTATTGTTTTATGTG	6544	False	NA	NA	False	NA	NA	NA	134422291	134436724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134422548_134433813_134436505_134436705
87319	chr2	-	2511	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	30	72	-5	-72	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	1443	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCGCCAGCGGCCAGAGCC	NA	False	NA	NA	False	NA	NA	NA	103315475	103284265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
87320	chrM	+	1658	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-280	0	-280	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	9	False	NA	NA	False	NA	NA	NA	9886	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
87321	chr4	+	1661	12	NIC	ENSMUSG00000040945.14	novel	3767	13	NA	NA	67	-1750	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	1330.72286327506	15	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAAGTTGTATTTCTTT	2448	False	NA	NA	False	NA	NA	NA	140428850	140448781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_140428962_140435261_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
87322	chr19	+	4316	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	15	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCAAAATGTCTCGTG	1484	False	NA	NA	False	NA	NA	NA	44282529	44295292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44292455_44293165
87323	chr4	+	2851	9	NNC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	7740	1318	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	100.94173752715	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAGCCCAAAACTTAGG	NA	False	NA	NA	False	NA	NA	NA	122737786	122754286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302_122753170_122753977
87324	chr3	+	2033	12	FSM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	43	-459	-2	459	multi-exon	FALSE	canonical	3	373	junction_11	43.5980892749872	1088	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTCCGAGCGACTCCTG	NA	False	NA	NA	False	NA	NA	NA	36606797	36620335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366_36619446_36619577
87325	chr19	+	1676	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	-109	297	-109	-297	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	1976	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	734	False	NA	NA	False	NA	NA	NA	8944295	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
87326	chr17	+	1792	7	Intergenic	novelGene_128	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGACTTGTTACCTGCAA	NA	False	NA	NA	False	NA	NA	NA	32164893	32253662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_32165786_32226649_32226768_32230149_32230282_32232290_32232441_32241738_32241844_32252234_32252386_32253418
87327	chr9	+	660	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	42	-212	42	212	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGCACC	NA	False	NA	NA	False	NA	NA	NA	96777752	96778412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777800_96778400
87328	chrX	-	1207	7	NIC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	-8	-3	intron_retention	FALSE	canonical	3	794	junction_1	116.900836419401	4818	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATAGTGGGGTATGCTT	NA	False	NA	NA	False	NA	NA	NA	72965502	72960483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72960893_72961448_72961534_72963107_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
87329	chrM	+	4999	2	Genic_Genomic	ENSMUSG00000064363.1_ENSMUSG00000064359.1_ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064360.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	-334	580	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	91	False	NA	NA	False	NA	NA	NA	9056	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13264_13353
87330	chr4	-	2859	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	-45	-256	-40	254	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	262	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAGTGTTTAGCATTA	NA	False	NA	NA	False	NA	NA	NA	147727010	147696139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
87331	chr17	-	1423	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	12	27	12	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	198	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGGTCTAGTATTG	9701	False	NA	NA	False	NA	NA	NA	29483148	29469803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
87332	chr6	-	920	6	NNC	ENSMUSG00000055850.13	novel	1434	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.011895920113	439	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8447	False	NA	NA	False	NA	NA	NA	72339376	72336696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_72336936_72337410_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
87333	chr7	-	1235	6	NIC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	4974	junction_1	3602.29593453953	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99128159_99128480_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
87335	chr11	-	3297	9	NNC	ENSMUSG00000020743.16	novel	869	7	NA	NA	-13	3778	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	180.841738475939	1282	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGCTGCCCACAGCGCG	NA	False	NA	NA	False	NA	NA	NA	115503342	115494965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115495069_115495545_115495737_115495846_115495910_115496792_115496960_115497639_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728
87336	chr4	+	4308	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	-84	-1210	-53	1210	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	666	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATTATTTTGTATGTAT	5188	False	NA	NA	False	NA	NA	NA	108436566	108473240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
87337	chr2	+	8372	11	Fusion	ENSMUSG00000078864.11_ENSMUSG00000078866.11	novel	1074	3	NA	NA	-19	69887	intron_retention	TRUE	non_canonical	0	0	junction_1	83.5325684987598	2552	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAGAGCCGCCTCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	177156619	177482152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177156642_177159392_177159735_177405978_177406220_177409836_177409964_177410168_177410230_177411379_177411502_177411669_177412610_177418732_177419007_177470112_177476103_177476310_177476442_177482030
87338	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	191	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
87339	chr4	-	2175	5	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	53	-2	intron_retention	FALSE	canonical	3	295	junction_4	33.5587171983674	2	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9188	False	NA	NA	False	NA	NA	NA	155976130	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155973626_155973890_155974054_155974125_155975127_155975209_155975873_155976087
87340	chr1	-	3802	11	NNC	ENSMUSG00000026000.17	novel	4270	10	NA	NA	10	-468	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_9	200.401122751346	3	130	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGCAGAAAGCCCCCATGT	NA	False	NA	NA	False	NA	NA	NA	67077983	67040143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67074579_67074647_67077653_67077751_67077960
87341	chrX	+	443	5	FSM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	43	-3	-4	3	multi-exon	FALSE	canonical	3	10431	junction_4	1336.12412877696	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTTTTTCTCCTGTTGAG	NA	False	NA	NA	False	NA	NA	NA	133486445	133488808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488685
87342	chr1	+	4431	15	FSM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	0	4838	0	-4838	multi-exon	FALSE	canonical	3	1477	junction_7	202.362891350955	30	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTAAGGGTGTTAGAT	NA	False	NA	NA	False	NA	NA	NA	118555675	118608060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
87343	chr17	+	1705	3	ISM	ENSMUSG00000034165.17	ENSMUST00000182539.8	931	4	1025	-595	-71	0	3prime_fragment	FALSE	canonical	3	4157	junction_1	0.5	32	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	NA	NA	NA	47908017	47910614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_47908505_47908927_47909065_47909533
87344	chrM	-	3547	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1218	-1810	-1218	1810	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTGGATTTGCA	900	False	NA	60	True	NA	NA	NA	15288	11741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11700_15300
87345	chr9	+	3354	3	NNC	ENSMUSG00000033491.14	novel	3444	2	NA	NA	-503	-657	intron_retention	FALSE	canonical	0	0	junction_1	1.5	1080	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAGCTGGGTCCATCTA	NA	False	NA	NA	False	NA	NA	NA	86625198	86639668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_86625413_86625681_86626364_86637210
87346	chrX	+	1226	7	FSM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	-430	3	-430	-3	multi-exon	FALSE	canonical	3	2920	junction_1	2439.95592514838	690	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTTTTTGTTTCTGATT	NA	False	NA	NA	False	NA	NA	NA	73313987	73316738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
87347	chr7	-	773	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5582.89117652215	18	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8419	False	NA	NA	False	NA	NA	NA	99132861	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129142_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
87348	chr15	-	5487	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	22	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	9489	False	NA	NA	False	NA	NA	NA	22705401	22699821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
87350	chr17	+	2058	1	Intergenic	novelGene_213	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGGTTTGGAGGGCGT	NA	False	NA	NA	False	NA	NA	NA	40153888	40155946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
87351	chr11	-	1553	4	NNC	ENSMUSG00000016559.15	novel	1993	4	NA	NA	0	-330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6192.9084174293	17	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915330	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914362_115914450_115914549_115914761_115914846_115915204
87352	chr3	+	3751	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	216	0	216	0	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	570	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGCAGTAGTGATGGATT	NA	False	NA	NA	False	NA	NA	NA	30847239	30875412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
87353	chr17	+	1315	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1258	0	5	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	186	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTTTTCCTTGCACAC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
87354	chr1	+	7569	15	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-3175	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	262.325004838016	1546	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGTCCCAGAAAAAAAGT	2438	False	NA	NA	False	NA	NA	NA	34475756	34488419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34476695_34476808_34476940_34477930_34478014_34478123_34478227_34478307_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438_34486993_34487037_34487947_34488029
87355	chr17	-	3422	2	NNC	ENSMUSG00000118642.2	novel	714	4	NA	NA	124	5106	intron_retention	TRUE	non_canonical	0	0	junction_1	0	19	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTACCTTCTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	40159594	40153887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_40154905_40157189
87356	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	122	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
87357	chr11	-	1207	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	203	223	69	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	3244	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113003	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87358	chr5	+	3238	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	111	1091	2	-1091	multi-exon	FALSE	canonical	3	187	junction_1	16.3389106124001	845	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTCTTGGTGGTTCATT	625	False	NA	NA	False	NA	NA	NA	122988221	123008263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
87359	chr2	-	2824	1	Antisense	novelGene_ENSMUSG00000027243.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	736	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCCGGAACCCACGGCCG	NA	False	NA	NA	False	NA	NA	NA	91544085	91541261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_91541300_91544100
87360	chr1	-	2345	3	ISM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	1	7475	1	540	5prime_fragment	FALSE	canonical	3	2269	junction_1	36	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGCCAGCTGAAGGTT	1650	False	NA	NA	False	NA	NA	NA	4855932	4850903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_4852957_4854173_4854329_4855795
87361	chr1	-	2249	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	52	-1520	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	896.466164076109	8	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTTTCTCATCTTT	NA	False	NA	NA	False	NA	NA	NA	13730718	13695073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13696456_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
87362	chrM	+	1123	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	20	1	20	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	59	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	18	False	NA	107	True	NA	NA	NA	14164	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
87363	chr11	-	4940	6	ISM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	478	-2968	478	2968	3prime_fragment	FALSE	canonical	3	2171	junction_1	422.285969456718	45	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACATTTCCATGCATTGA	NA	False	NA	NA	False	NA	NA	NA	51497196	51487958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
87364	chr4	-	4235	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	72	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATATTTTATGTTTGA	2522	False	NA	NA	False	NA	NA	NA	129229133	129200892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203675_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
87365	chr13	-	2869	8	NNC	ENSMUSG00000021711.18	novel	1689	13	NA	NA	23312	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	356.361545372685	7	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGACAGATAATGCCAT	NA	False	NA	NA	False	NA	NA	NA	104291603	104278684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286698_104290799_104290849_104291344_104291418_104291516
87366	chr7	+	1930	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	-40	-499	-11	499	multi-exon	FALSE	canonical	3	255	junction_1	0	1202	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGACACCTATCTTCA	7531	False	NA	NA	False	NA	NA	NA	100186266	100190075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100186400_100188278
87367	chr14	-	4035	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	-73	-830	-73	830	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	917	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTTTTGTCAAGCAACAT	NA	False	NA	NA	False	NA	NA	NA	20398262	20369089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
87368	chr2	+	956	6	NNC	ENSMUSG00000027454.11	novel	1087	7	NA	NA	-4	163	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	173.33158973482	29	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGACTCCCTGGAATG	2441	False	NA	NA	False	NA	NA	NA	150751532	150769628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769225
87370	chr7	-	4303	12	Fusion	ENSMUSG00000040435.13_ENSMUSG00000011382.9	novel	2333	3	NA	NA	-1	-926	intron_retention	FALSE	non_canonical	0	0	junction_1	151.117927788775	121	53	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCACTCATAGTTACTGCA	3982	False	NA	NA	False	NA	NA	NA	45175571	45135827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_45135904_45165658_45165798_45165936_45166110_45167202_45167391_45168008_45168330_45169153_45169266_45170161_45170279_45170366_45170466_45171267_45171440_45171646_45172747_45173162_45174816_45175418
87371	chr2	-	2662	3	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	67	-28	intron_retention	FALSE	canonical	3	12	junction_1	2.5	6	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAATGTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166349924	166341988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166344399_166347371_166347507_166349807
87372	chr4	+	3683	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-857	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	293.581062059527	22	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAATTATGTCCATCCACT	1855	False	NA	NA	False	NA	NA	NA	146516840	146553892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437_146552248_146552395
87373	chr12	+	3781	2	Intergenic	novelGene_4378	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	0	105	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	68605039	68610270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68608611_68610060
87374	chr2	+	748	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	-26	7	-6	-7	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	52	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTGAATGGGCTTGGCT	5796	False	NA	NA	False	NA	NA	NA	32851725	32854048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
87375	chr16	+	5891	10	NNC	ENSMUSG00000022849.6	novel	4680	9	NA	NA	14	3959	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	249.645526474818	2472	71	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCTGAGTTTAGGTTTT	5418	False	NA	NA	False	NA	NA	NA	35590758	35652806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252_35649021_35649421_35650268_35652552
87376	chrX	+	15339	8	Antisense	novelGene_ENSMUSG00002076267.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	319	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACAGAGATGGCAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	29454550	30144572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_29459275_29472081_29472280_29555739_29556120_29803589_29808758_30000890_30002101_30002468_30003241_30139175_30139586_30142095
87377	chrX	-	4185	26	Intergenic	novelGene_4064	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1200	22	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAATGCGTCCGGGAGAG	NA	False	NA	NA	False	NA	NA	NA	143157446	143100911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_143101116_143102996_143103054_143105003_143105145_143119105_143119458_143120085_143120172_143121959_143122009_143122718_143122768_143123715_143123787_143125389_143125472_143125640_143125809_143127257_143127331_143128605_143128715_143129675_143129739_143130951_143131054_143132281_143132414_143133276_143133524_143134256_143134375_143134766_143134908_143135623_143135762_143136544_143136624_143138578_143138647_143139789_143139955_143146857_143147102_143150892_143150933_143152553_143152857_143156542
87378	chr7	-	3492	27	NIC	ENSMUSG00000038644.15	novel	3454	27	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_26	275.44398801307	804	9	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198169	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198035
87379	chr1	+	7917	15	NNC	ENSMUSG00000073627.8	novel	3109	3	NA	NA	-14194	-2816	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8535	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTACGAGCAGTGCACAA	NA	False	NA	NA	False	NA	NA	NA	86273101	86287678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86274613_86274792_86278416_86278530_86278756_86279086_86279216_86279919_86280039_86280228_86280354_86280845_86281002_86281452_86281578_86282741_86282866_86283772_86283915_86284091_86284180_86284277_86284464_86284678_86285173_86285826_86285945_86286926
87380	chr7	+	646	7	Fusion	ENSMUSG00000059824.13_ENSMUSG00000059070.17	novel	679	6	NA	NA	286	0	multi-exon	FALSE	non_canonical	0	0	junction_1	3043.96656884109	52	2	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	45357598	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_45357606_45367527_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
87381	chr17	-	2640	10	NNC	ENSMUSG00000036983.8	novel	1402	7	NA	NA	29915	9795	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.6991136898618	4	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGCTTGGTGGGATTT	NA	False	NA	NA	False	NA	NA	NA	3578094	3559735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_3559853_3561328_3561451_3563121_3563230_3563664_3563722_3564942_3565049_3566241_3566327_3566832_3566990_3568383_3570071_3571919_3572048_3578021
87382	chr13	+	3673	27	FSM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	-108	341	-106	132	multi-exon	TRUE	canonical	3	407	junction_1	134.848435629472	785	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCACTTGCTGCTCTTG	NA	False	NA	NA	False	NA	NA	NA	6598078	6630210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
87383	chr1	+	2813	12	NNC	ENSMUSG00000025962.16	novel	642	4	NA	NA	55	281	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	125.922775757785	649	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAGGCAGCATTTCGACC	NA	False	NA	NA	False	NA	NA	NA	63769856	63791978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63770096_63770556_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
87384	chr8	+	4395	15	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-32	-7	intron_retention	FALSE	non_canonical	0	0	junction_11	270.341630051266	49	165	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGTGAGGCTCACT	5809	False	NA	NA	False	NA	NA	NA	107330742	107396871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390839_107391056_107392025_107392157_107392818_107392963_107395037
87385	chrM	+	2609	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1027	0	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	-3	True	NA	22	True	NA	NA	NA	1093	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
87386	chr2	-	3922	19	NNC	ENSMUSG00000027184.15	novel	6169	19	NA	NA	11	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	439.650650453794	2	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCATGTGTGGTTATGGT	NA	False	NA	NA	False	NA	NA	NA	103627983	103595359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627142_103627825
87387	chr19	+	3895	4	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-15	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1224.23754049431	6	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	1454	False	NA	NA	False	NA	NA	NA	44282499	44295298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283462_44291726_44294895_44295041
87388	chr5	-	2509	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_14	176.391146985028	1058	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGAGCCTCCCGCATC	1952	False	NA	NA	False	NA	NA	NA	138185488	138176881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185223
87389	chrM	+	832	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-151	0	-151	0	mono-exon	FALSE	NA	NA	NA	NA	NA	122127	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-1	True	NA	NA	False	NA	NA	NA	7775	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
87390	chr2	-	3267	24	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	189.765351075503	7	29	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGACCTAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	127673682	127643044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127673624
87392	chr14	+	2185	3	NIC	ENSMUSG00000012405.17	novel	802	4	NA	NA	-14	-3	intron_retention	FALSE	canonical	3	877	junction_1	7647.5	255	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACCTATGTTATCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	4198711	4201870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_4198852_4199235_4199790_4200379
87393	chr7	-	2709	25	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.199826313471363	10	10	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTCACAGCTCAGAACCTG	9273	False	NA	NA	False	NA	NA	NA	13045351	13019278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
87394	chr8	+	3259	20	ISM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	3041	2095	3027	-2095	3prime_fragment	FALSE	canonical	2	2613	junction_18	264.272838112412	3114	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111763574	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
87395	chr1	-	3939	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	-2	-376	-2	376	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	664	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTAAAAAAAAAAACCTCGT	NA	False	NA	NA	False	NA	NA	NA	58544270	58501553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
87396	chr9	+	469	3	Antisense	novelGene_ENSMUSG00000060461.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	119	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTTCACCCACGGGGG	NA	False	NA	NA	False	NA	NA	NA	78274339	78275328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78274581_78275004_78275168_78275263
87397	chrM	+	1013	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-53	-3	-53	3	mono-exon	FALSE	NA	NA	NA	NA	NA	108	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	274	False	NA	56	True	NA	NA	NA	2697	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
87398	chr4	-	2268	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	39	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.152774954745	27	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGAGCTGAGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	137523656	137469047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469323_137469533_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
87399	chr2	-	3462	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-7419	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	188.309954301117	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCATGTGACCTAGTTGT	NA	False	NA	NA	False	NA	NA	NA	127681204	127643046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127681012
87400	chr1	-	1626	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-841	-2	-841	2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
87401	chr4	-	524	3	FSM	ENSMUSG00000028234.7	ENSMUST00000103009.5	582	3	48	10	48	-10	multi-exon	FALSE	canonical	3	6653	junction_2	831.5	45	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAATGGTCAAATTTTGCT	158	False	NA	NA	False	NA	NA	NA	3835440	3834482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3834684_3834935_3835010_3835191
87403	chr5	+	6011	27	NNC	ENSMUSG00000015880.14	novel	3703	21	NA	NA	-79	156952	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	217.385435378714	796	16	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTCCCGCGTCACGCGCC	NA	False	NA	NA	False	NA	NA	NA	45827181	46014840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189_45859342_45893073_45893165_45904392_45904650_45932733_45932863_45933760_45933842_45952634_45952703_46014690
87404	chr2	-	3840	19	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	59	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	593.411025396165	2	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGACTTTTCTCATGTGTG	NA	False	NA	NA	False	NA	NA	NA	103627390	103595367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604158_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627142_103627323
87405	chr4	-	4172	12	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-34	8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	305.162062349697	123	93	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTTTGAGTGAATGT	9982	False	NA	NA	False	NA	NA	NA	129229197	129200884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203674_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
87406	chr16	-	737	6	Antisense	novelGene_ENSMUSG00000086965.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCGGGGCTGCGCGCGCAC	NA	False	NA	NA	False	NA	NA	NA	18363942	18317565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18317704_18317797_18317887_18359180_18359324_18359719_18359843_18362855_18363022_18363864
87407	chr6	-	500	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	-25	-52	-25	52	mono-exon	FALSE	NA	NA	NA	NA	NA	68	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGCCTACAGAACTC	NA	False	NA	NA	False	NA	NA	NA	66852752	66852252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_66852300_66852800
87408	chr5	-	2685	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	186.261720628337	3	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGAGCCTCCCGCATC	1956	False	NA	NA	False	NA	NA	NA	138185484	138176881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185043
87409	chr12	+	3668	10	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	210	-16	intron_retention	FALSE	canonical	3	549	junction_7	35.1002092779804	101	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTCTTCTATGACTAAAA	2404	False	NA	NA	False	NA	NA	NA	109612102	109628127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
87410	chrM	+	886	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	488	4	488	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGTGAATATAGTTTACA	50	False	NA	NA	False	NA	NA	NA	10654	11540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10700_11500
87411	chr1	-	1925	3	Intergenic	novelGene_489	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2	32	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAATTGAGACTTGTAG	NA	False	NA	NA	False	NA	NA	NA	180713124	180704927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_180706628_180710076_180710166_180712988
87413	chr9	+	2029	6	ISM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	69	3	69	-3	intron_retention	FALSE	canonical	3	2717	junction_1	351.628554016877	33	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTCTCGTTGGAGAGGTG	NA	False	NA	NA	False	NA	NA	NA	78099297	78116628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082
87414	chr17	-	2702	4	Antisense	novelGene_ENSMUSG00000099237.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	5.90668171555645	21	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATAAATCTTTAAAA	7515	False	NA	NA	False	NA	NA	NA	27548993	27543055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_27544476_27544829_27544999_27545783_27546728_27548824
87415	chr1	+	1130	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	90	-4	-90	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCCTGTTTGATGTAT	NA	False	NA	NA	False	NA	NA	NA	86454443	86458344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
87417	chr5	-	1166	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	85	-11	-15	11	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	8745	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCCTTCCTGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	117425605	117420707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
87419	SIRV3	+	2288	6	NNC	SIRV3A	novel	1083	8	NA	NA	585	1004	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1251.6631495734	2452	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTTTTTTTCGTAAGG	NA	False	NA	NA	False	NA	NA	NA	4588	9943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_4780_6057_7233_8124_8208_8755_8976_9189_9297_9431
87420	chr17	+	828	5	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	117	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	191.317145075918	2	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTATGGGTTGCTTTGTAC	4720	False	NA	NA	False	NA	NA	NA	25459260	25461768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25459320_25460041_25460232_25460661_25460836_25461132_25461197_25461427
87421	chr15	-	3288	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	298	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	NA	False	NA	NA	False	NA	NA	NA	36794782	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
87422	chr1	-	11593	16	NNC	ENSMUSG00000039630.11	novel	2844	17	NA	NA	9	1889	intron_retention	FALSE	non_canonical	0	0	junction_15	2029.54549263294	2096	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAACATTACCTTTTTCTCC	NA	False	NA	NA	False	NA	NA	NA	178165353	178146783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_178150761_178151184_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517_178164548_178165285
87423	chrX	+	2430	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	127	5	-53	-5	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	3	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473287	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
87424	chr9	+	906	2	Genic_Genomic	ENSMUSG00000049932.4	novel	1384	1	NA	NA	13	-15	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTTTTAAAAAAGTGGT	5266	False	NA	NA	False	NA	NA	NA	44246003	44247359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_44246374_44246823
87425	chr16	+	3450	10	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-100	-910	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1923.64933536029	55	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGCACAGCTCAACGTT	NA	False	NA	NA	False	NA	NA	NA	84570910	84621906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571272_84571393_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609781_84609987_84612056_84612157_84613153_84613285_84618147_84618191_84619674
87426	chrM	+	1124	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	20	0	20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	18	False	NA	107	True	NA	NA	NA	14164	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
87427	chr11	-	926	8	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	2284	223	2150	0	3prime_fragment	FALSE	canonical	3	16996	junction_6	1784.68258196446	565	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33110922	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827
87428	chrUn_MU069435v1	+	598	1	Intergenic	novelGene_4769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1350	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCGTGGCACGCCCGCTC	NA	False	NA	NA	False	NA	NA	NA	0	598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
87429	chr9	+	4613	12	FSM	ENSMUSG00000010048.11_ENSMUSG00000103164.2	ENSMUST00000010192.11	2056	12	0	-2557	0	704	multi-exon	TRUE	canonical	3	631	junction_11	35.5716016363504	14	53	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGTGCATCTCTACCCA	NA	False	NA	NA	False	NA	NA	NA	107464840	107472794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
87430	chr9	-	1717	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4740.55454432866	147	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7097	False	NA	NA	False	NA	NA	NA	78389009	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386315_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
87431	chr10	-	1659	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	-47	0	-47	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGTTTTATTTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	90959968	90952435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
87432	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
87433	chr3	+	1575	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	-22	23	-4	-23	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	2275	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTTTTTAAAAA	7736	False	NA	NA	False	NA	NA	NA	115681809	115722958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
87434	chr4	+	458	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	16	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	639	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	152410325	152416937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
87435	chr8	+	901	1	Genic_Genomic	ENSMUSG00000031762.8	novel	NA	NA	NA	NA	-3	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	393	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTCAGCTTGTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	94899288	94900189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_94899300_94900200
87436	chr6	-	1180	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13741	16	4172	1	mono-exon	FALSE	NA	NA	NA	NA	NA	13	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122705963	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706000
87437	chr4	+	1794	20	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	24	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	157.257943970498	39	80	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTAAAGTATTATTCTG	33	False	NA	NA	False	NA	NA	NA	34615001	34660139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659559_34659988
87438	chr7	+	5040	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	-11	264	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	243.928777031102	1421	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATATTCAACATTGTGTG	7187	False	NA	NA	False	NA	NA	NA	109617469	109656080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109647998_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
87439	chr3	+	3209	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	-10	-1070	0	93	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	1765	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTTAAAGAGCTTTCAT	4849	False	NA	NA	False	NA	NA	NA	34074246	34124564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
87440	chr9	+	1506	9	FSM	ENSMUSG00000032369.14	ENSMUST00000093801.10	2302	9	499	297	-93	4	multi-exon	FALSE	canonical	1	104	junction_4	78.1135991681346	1227	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATGTTACTTTACAA	NA	False	NA	NA	False	NA	NA	NA	92132301	92154034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_92132414_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
87441	chrX	-	3373	2	Intergenic	novelGene_4035	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAAGGAGTCTAAAGATTA	NA	False	NA	NA	False	NA	NA	NA	116231727	116227964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116228175_116228564
87442	chr17	+	1024	2	NNC	ENSMUSG00000024209.10	novel	943	3	NA	NA	1714	603	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAAATAATATTGAAAA	NA	False	NA	NA	False	NA	NA	NA	57184216	57185421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_57184715_57184895
87443	chrM	-	813	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	211	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAGCTATTTTAATGTG	5384	False	NA	NA	False	NA	NA	NA	1018	205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1000
87444	chr11	+	2648	12	NNC	ENSMUSG00000020513.16	novel	1964	10	NA	NA	-48	356684	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	18.3712855356234	1504	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGGGGGTGCATGCC	NA	False	NA	NA	False	NA	NA	NA	86435768	86814870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862_86458463_86606812_86606963_86618015_86618021_86814572
87445	chr1	-	2098	12	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	1963	5777	1532	0	3prime_fragment	FALSE	canonical	3	5903	junction_8	870.888621888894	381	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGACTTAATACTTCC	NA	False	NA	NA	False	NA	NA	NA	86285159	86278217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
87446	chr16	-	2866	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-322	857	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	266	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTAGTTCACATAAGCA	6249	False	NA	NA	False	NA	NA	NA	93592111	93588166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_93590271_93590397_93590505_93591456
87447	chr17	+	609	1	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	2019	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTTGCTTTGTACGTG	6622	False	NA	NA	False	NA	NA	NA	25461162	25461771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25461200_25461800
87448	chrM	+	2271	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-447	0	447	mono-exon	FALSE	NA	NA	NA	NA	NA	449	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAACCCAAGACAACCAACC	-4	True	NA	4	True	NA	NA	NA	11741	14012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_14000
87449	chr11	+	1290	2	Antisense	novelGene_ENSMUSG00000082806.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	195	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAAATTATTCTAG	5442	False	NA	NA	False	NA	NA	NA	84963268	85002655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_84963816_85001912
87450	chr11	-	2163	7	ISM	ENSMUSG00000020358.18	ENSMUST00000109103.4	1437	8	425	-1071	425	-3	3prime_fragment	FALSE	canonical	3	1798	junction_2	628.220414256723	2002	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGCTGTTCTTGACCTTG	NA	False	NA	NA	False	NA	NA	NA	51497249	51490929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485_51495645_51496287_51496457_51497166
87451	chr6	+	446	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	-33	-59	-33	59	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	71101560	71102006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_71101600_71102000
87452	chrM	-	2426	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-1218	-689	-1218	689	mono-exon	FALSE	NA	NA	NA	NA	NA	30	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGGCATGATGATGTGAA	900	False	NA	60	True	NA	NA	NA	15288	12862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12900_15300
87453	chr11	+	2664	2	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	130	60	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTGTGGGGACACAGAG	9532	False	NA	NA	False	NA	NA	NA	120467652	120470401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120470257_120470341
87454	chr13	-	963	6	NNC	ENSMUSG00000060739.9	novel	2700	6	NA	NA	-1	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	321.300855896775	18	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTTAGTTTGGGGCATA	NA	False	NA	NA	False	NA	NA	NA	97274382	97267499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272134_97272217_97274262
87455	chr9	+	645	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-111	-44	111	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTTCTTTGGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	96777666	96778311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778300
87456	chr2	+	5748	22	NNC	ENSMUSG00000027323.11	novel	3368	10	NA	NA	-439	9554	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	387.573110651104	1784	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAGACGCGCGTGGAGAT	NA	False	NA	NA	False	NA	NA	NA	118942834	118987480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529_118968233_118968826_118968914_118969524_118969573_118969831_118969930_118970519_118970602_118970739_118970814_118973105_118973169_118976817_118976922_118977789_118978074_118983854_118984001_118984370_118984564_118986838_118987029_118987383
87457	chr11	-	1159	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	251	223	117	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	2443	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33112955	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87458	chr3	+	4127	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	184	7	-2	-7	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	2291	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTAGCACCTAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	102927925	102965495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
87459	chr11	+	3323	20	Antisense	novelGene_ENSMUSG00000001440.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTGCTGGTATTGTGCC	1710	False	NA	NA	False	NA	NA	NA	97052577	97075796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_97053508_97054178_97054343_97054740_97054855_97055550_97055657_97055778_97055923_97056201_97056307_97056869_97056958_97058377_97058523_97059692_97059763_97059973_97060122_97060727_97060858_97062346_97062542_97063880_97064107_97066577_97066676_97068070_97068183_97069095_97069181_97069688_97069754_97071269_97071422_97072449_97072656_97075756
87460	chrM	+	534	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	426	-3	426	3	mono-exon	FALSE	NA	NA	NA	NA	NA	184	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	0	True	NA	-42	True	NA	NA	NA	3176	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3200_3700
87461	chr6	+	1729	4	NNC	ENSMUSG00000040370.14	novel	1618	4	NA	NA	-3	-15	intron_retention	FALSE	canonical	2	2	junction_1	145.260685206516	52	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAATAAATCTTAAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	145156922	145162250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145157127_145160247_145160511_145160909_145160998_145161076
87462	chr19	+	3106	7	NNC	ENSMUSG00000024791.11	novel	2024	6	NA	NA	-16	33900	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	169.712174643489	3306	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAATCTTTAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	6134996	6175707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677_6142701_6175534
87463	chrX	-	4077	19	NNC	ENSMUSG00000025264.13	novel	3796	5	NA	NA	6448	39492	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	491	19	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCGGCGCCCGGCGGAGC	NA	False	NA	NA	False	NA	NA	NA	149873071	149830597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149830975_149849174_149849350_149849704_149849882_149850003_149850446_149851870_149851960_149852634_149852785_149855163_149855324_149855427_149855569_149861954_149862013_149862152_149862301_149862874_149862966_149863110_149863197_149868629_149868654_149869105_149869212_149869515_149869642_149869815_149869976_149870961_149871103_149871592_149872933_149872985
87464	chr5	+	6161	7	FSM	ENSMUSG00000037720.17	ENSMUST00000161369.3	6164	7	-5	8	-5	-8	multi-exon	FALSE	canonical	3	385	junction_4	35.264476932649	722	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTTAAGCAGGTTTAGAA	NA	False	NA	NA	False	NA	NA	NA	67418142	67448796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
87465	chr1	-	3277	12	NNC	ENSMUSG00000026035.16	novel	1033	7	NA	NA	-16790	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	93.8647699689416	30	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATCACATGTGAGTGTC	3520	False	NA	NA	False	NA	NA	NA	58501435	58470162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58484304_58484791_58486789_58487248_58489544_58489707_58491245_58491373_58494753_58494892_58496935_58497020_58500296
87466	chr4	-	2529	10	FSM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	44	-452	1	452	multi-exon	TRUE	canonical	3	276	junction_4	15.561903466677	718	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	106536097	106519000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
87467	chr19	+	3639	7	NNC	ENSMUSG00000023307.15	novel	1809	6	NA	NA	174	2303	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	272.865911310951	475	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTATTTTGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	37185148	37201853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788_37200109_37200374
87469	chr12	+	1981	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1908.10962997413	73	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763663_24763775
87470	chr4	-	9629	9	Antisense	novelGene_ENSMUSG00000078503.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	133	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAATGGTGGAACTTCC	3631	False	NA	NA	False	NA	NA	NA	145273049	145237347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237493_145241436_145241588_145257426_145257484_145261383_145261601_145263161_145263708_145263959_145264203_145264370_145264929_145265010_145266415_145266741
87471	chr8	+	2560	15	NNC	ENSMUSG00000060038.15	novel	1333	9	NA	NA	-68	5491	intron_retention	FALSE	non_canonical	0	0	junction_2	126.495482697435	556	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATTGAGACCACCGTC	NA	False	NA	NA	False	NA	NA	NA	85798861	85807282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85799246_85799923_85800046_85800128_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562_85801972_85802450_85802565_85802646_85802761_85802844_85802914_85806209_85806339_85806420_85806855_85806941_85807063_85807141
87472	chr6	+	3755	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	-342	14	22	-14	multi-exon	FALSE	canonical	3	716	junction_1	10	3278	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTCAAATCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	125168785	125173218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125169397_125169478_125169590_125170185
87473	chr17	-	3666	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	-31	10	-31	-10	multi-exon	FALSE	canonical	3	548	junction_7	40.8821102534533	680	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAAGTATGCCTGTAA	NA	False	NA	NA	False	NA	NA	NA	56597542	56584485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
87474	chr2	-	2323	7	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.372677996249965	48	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAAATAGTGTGGCCAT	6849	False	NA	NA	False	NA	NA	NA	162925595	162916499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162917696_162919706_162919807_162921511_162921627_162922636_162922743_162923066_162923211_162924466_162924618_162925084
87475	chr6	-	456	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	89	25	0	-11	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAACACCTCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	72935382	72934354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72934636_72934895_72935008_72935319
87476	chr4	-	10393	6	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	152	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCTAGAAAAGGTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	42231478	41877123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41881894_41881987_41882569_42056189_42056202_42207622_42207630_42226364_42231138_42231228
87477	chr7	+	3258	7	NIC	ENSMUSG00000063229.16	novel	1815	8	NA	NA	0	-3	intron_retention	FALSE	canonical	3	7665	junction_3	435.699310177201	5	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGGCTCTGCTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
87478	chr7	+	1727	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	2907.20433771424	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495486_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
87479	chr11	+	3250	19	Antisense	novelGene_ENSMUSG00000001440.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	84	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTTCTGTGCCCAACGT	1710	False	NA	NA	False	NA	NA	NA	97052577	97072622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_97053508_97054178_97054343_97054740_97054855_97055550_97055657_97055778_97055923_97056201_97056307_97056869_97056958_97058377_97058523_97059692_97059763_97059973_97060122_97060727_97060858_97062346_97062542_97063880_97064107_97066577_97066676_97068070_97068183_97069095_97069181_97069688_97069754_97071269_97071422_97072449
87480	chr2	-	1679	11	NNC	ENSMUSG00000027423.16	novel	2512	14	NA	NA	-2	645	intron_retention	FALSE	canonical	0	0	junction_10	422.577815319262	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATATATCTTGCTTGGGT	NA	False	NA	NA	False	NA	NA	NA	144112706	144094999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112636
87481	chr6	-	1094	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	32	424	8	1	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	2744	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTTGTACTCTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	33037163	32769575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
87482	chr10	-	2324	13	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.805619318392	1365	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	9	True	NA	NA	False	NA	NA	NA	128401860	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394349_128394514_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
87483	chr2	+	2745	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	27	-1118	8	836	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	3	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGCTAGTATTTCAATTTG	7502	False	NA	NA	False	NA	NA	NA	75489631	75497301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
87484	chr19	-	3120	16	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2081	11	NA	NA	120	-32	multi-exon	FALSE	non_canonical	0	0	junction_1	201.68684196601	5	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTCCTTCCGCCCTCCC	6160	False	NA	NA	False	NA	NA	NA	4251473	4242139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4242269_4242739_4242871_4243018_4243253_4243763_4243829_4244479_4244687_4244767_4244899_4244973_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327
87485	chr17	+	717	6	FSM	ENSMUSG00000037805.16	ENSMUST00000042334.16	830	6	112	1	0	0	multi-exon	FALSE	canonical	3	5482	junction_4	1458.64553610533	120	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
87487	chr11	-	963	9	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	6711.77843305148	186	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113075	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110845_33112960
87488	chr12	+	3991	6	NIC	ENSMUSG00000037466.14	novel	4000	9	NA	NA	-32	-607	intron_retention	FALSE	canonical	3	190	junction_4	20.4117613154769	206	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTCAATGGCGGAACGC	NA	False	NA	NA	False	NA	NA	NA	113120008	113129061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_113120192_113120294_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
87489	chr9	+	551	2	Genic_Genomic	ENSMUSG00000062933.8	novel	490	1	NA	NA	-38	216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGAAGCACCTGAC	NA	False	NA	NA	False	NA	NA	NA	96777672	96778416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_96777884_96778076
87490	chr2	+	8686	11	NNC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-87	73938	intron_retention	TRUE	non_canonical	0	0	junction_4	93.2686442487506	2504	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGGAACTTGAGGGCTT	NA	False	NA	NA	False	NA	NA	NA	177189920	177275494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177200435_177200518_177203687_177258458_177261386_177261468_177261792_177261875_177262086_177263225_177263286_177263477_177263606_177275395
87491	chr17	+	1840	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	0	9	0	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCATTAACGGGAGACTG	NA	False	NA	-25	True	NA	NA	NA	40157243	40159083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159100
87492	chr5	+	5009	20	ISM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	32143	-4	-3515	4	3prime_fragment	FALSE	canonical	3	795	junction_8	129.278157881613	315	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	75767718	75817386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
87493	chr11	-	2679	5	ISM	ENSMUSG00000020358.18	ENSMUST00000074669.10	2370	7	1343	-862	1343	862	3prime_fragment	FALSE	canonical	3	2171	junction_1	464.277058985257	1818	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCTACTGCCACCACCA	NA	False	NA	11	True	NA	NA	NA	51496331	51490064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51492306_51493419_51493523_51495226_51495359_51495485_51495645_51496287
87494	chr4	+	3108	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33229	-869	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	276.067423326662	6	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTAGGCCTATGCAATTA	NA	False	NA	NA	False	NA	NA	NA	146500250	146553880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500544_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437_146551260_146552211
87495	chr2	+	1147	2	Intergenic	novelGene_2665	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	57	junction_1	0	581	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTTAAAGATATTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	80026604	80042269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_80026685_80041202
87496	chr8	+	4189	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-8	3221	multi-exon	FALSE	non_canonical	0	0	junction_5	531.296677949336	100	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTTAATATATATATA	NA	False	NA	NA	False	NA	NA	NA	19834753	20049109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20041886_20045732
87497	chr1	-	842	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	-3	-161	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
87498	chrX	-	3633	1	Antisense	novelGene_ENSMUSG00000000787.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	222	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTAAATTCAAGTATTTG	NA	False	NA	NA	False	NA	NA	NA	13160289	13156656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13156700_13160300
87499	chr11	-	3610	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	114	-149	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_15	1439.99299381012	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTCATTTCTTTTGAGGG	8250	False	NA	NA	False	NA	NA	NA	50216386	50185442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50210560_50210655_50216319
87500	chr15	-	2003	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	269	-150	-49	15	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	124	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCTAATGTAGCTTCCATC	709	False	NA	NA	False	NA	NA	NA	36793812	36771797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
87501	chr6	-	5736	36	NNC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	-2	9434	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	103.302488264478	813	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCTGCCGCAGAGGAAA	NA	False	NA	NA	False	NA	NA	NA	30873685	30738118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30738333_30740666_30740822_30742137_30742218_30742524_30742604_30742713_30742855_30743016_30743070_30744350_30744392_30744858_30744931_30745079_30745181_30745826_30745906_30746260_30746322_30747047_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30872993_30873177_30873595
87502	chr7	+	1391	2	FSM	ENSMUSG00000044881.8	ENSMUST00000120454.3	742	2	-65	-584	-65	-6	multi-exon	FALSE	canonical	2	17	junction_1	0	54	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCACACCTAGTCTGCT	7638	False	NA	NA	False	NA	NA	NA	100186373	100189570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_100186473_100188278
87503	chr4	+	4673	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-15	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	291.29827926028	104	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTGTCTTCGGGATGC	1855	False	NA	NA	False	NA	NA	NA	146516840	146554734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437
87504	chr15	+	5514	28	Fusion	ENSMUSG00000071586.5_ENSMUSG00000056851.15	novel	2952	15	NA	NA	2	1680	multi-exon	FALSE	non_canonical	0	0	junction_1	188.954396774345	2489	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTGTAAGGAATTAAGGAG	2011	False	NA	NA	False	NA	NA	NA	102378975	102414001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_+_102379031_102379171_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923_102408614_102408944_102409202_102409283_102409358_102409535_102410155_102410262_102410406_102410499_102410618_102410749_102410859_102411070_102411180_102411922_102412086_102412162_102412322_102412552_102412741_102412903_102413091_102413526
87505	chr11	+	4856	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	-21	-708	-21	708	multi-exon	FALSE	canonical	3	535	junction_8	60.360778272973	886	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCCAGTGCCCTGGGCCA	NA	False	NA	NA	False	NA	NA	NA	6241611	6307350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
87506	chr15	-	1915	10	ISM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	21	2	-6	-2	intron_retention	FALSE	canonical	3	415	junction_8	23.8317145267383	2	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTGGACTCAGAAGCTG	8940	False	NA	NA	False	NA	NA	NA	75801581	75796533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740
87507	chr2	+	3930	5	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	8439	1028	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	27.712812921102	4	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAAGCCAGCCCCAATTA	NA	False	NA	NA	False	NA	NA	NA	177165077	177170950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177165206_177165410_177165555_177166618_177167110_177167699_177168005_177168088
87508	chr13	-	805	1	Genic_Genomic	ENSMUSG00000113311.2	novel	NA	NA	NA	NA	-622	-2372	mono-exon	FALSE	NA	NA	NA	NA	NA	132	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGGAGCCGAAGGCAGCGA	8374	False	NA	NA	False	NA	NA	NA	74555478	74554673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_74554700_74555500
87509	chr17	+	2000	1	Intergenic	novelGene_181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTCACCGGGGTCTTGGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
87510	chr10	+	4465	3	NNC	ENSMUSG00000038587.11	novel	5956	3	NA	NA	6402	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	831.5	10	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTATATTCACTGTTTT	NA	False	NA	NA	False	NA	NA	NA	4304169	4309462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4307940_4308477_4309111_4309400
87511	chr3	+	2106	16	FSM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	-36	7065	-36	266	multi-exon	FALSE	canonical	3	839	junction_3	66.7311687960648	3060	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTATGAATCACTTTTG	NA	False	NA	NA	False	NA	NA	NA	69629281	69656641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
87512	chr12	-	788	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	32	-314	0	-21	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGTTGTATTTTCTCACT	NA	False	NA	NA	False	NA	NA	NA	80690574	80680816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
87513	chr1	-	3691	14	NNC	ENSMUSG00000039630.11	novel	7640	14	NA	NA	11	-2759	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	1708.43202966931	1645	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTATCTTCTCGGCTTAG	NA	False	NA	NA	False	NA	NA	NA	178165351	178155155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178165207
87514	chr3	+	2333	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	454	1180	-7	51	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	973	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAACACAGCAAGCCATT	NA	False	NA	NA	False	NA	NA	NA	30847477	30874232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
87515	chr7	-	1921	10	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	256	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	6368.18335240723	16	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398952	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216_126398497_126398610
87516	chr4	-	2730	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	-1	-912	-1	912	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	1039	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCTTTCAAAATAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	143026135	142993088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
87517	chr5	+	1024	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	154	1199	21	-1199	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	995	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGTTTAGAATCAGAATAAA	496	False	NA	NA	False	NA	NA	NA	129097286	129100188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
87518	chr14	+	1687	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	63	415	63	29	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	22367	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTCTTTTGAG	1749	False	NA	NA	False	NA	NA	NA	26359291	26377998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
87519	chr7	+	8961	35	NNC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	-46	12718	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_31	177.636805800731	1636	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCGACTTTCTGGCCCG	NA	False	NA	NA	False	NA	NA	NA	118339908	118454907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418_118445320_118447672_118447796_118449841_118449912_118451624_118452564_118454845
87520	chr6	-	2792	5	Antisense	novelGene_ENSMUSG00000030245.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1019	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCCGGAAACACGCAGC	NA	False	NA	NA	False	NA	NA	NA	142349584	142332973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_142333096_142338055_142338148_142339653_142339830_142341910_142341995_142347266
87521	chr14	+	1223	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-182	-705	-182	705	mono-exon	FALSE	NA	NA	NA	NA	NA	952	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669255	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
87523	chrX	-	2194	6	NIC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	794	junction_1	120.554386067036	26	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGGGGTATGCTTTTT	NA	False	NA	NA	False	NA	NA	NA	72965512	72960480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72960893_72961448_72961534_72963107_72963476_72963568_72964648_72964877_72964977_72965361
87524	chr11	-	3789	19	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	-5475	-47	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_18	112.902394205278	10	63	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAGTCATAGACATAAAAT	NA	False	NA	NA	False	NA	NA	NA	79858691	79824825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79858559
87525	chr5	-	2601	16	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	240.720714152775	18	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGAGCCTCCCGCATC	1994	False	NA	NA	False	NA	NA	NA	138185446	138176881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138183653_138183788_138185223
87526	chrUn_MU069435v1	-	3880	5	Intergenic	novelGene_4779	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	313	58	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAAAAGGCAAACTTA	NA	False	NA	NA	False	NA	NA	NA	27176	18677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_19930_20500_21096_21185_21351_23495_23621_25433
87527	chr8	+	8837	49	NNC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-87097	-2094	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1810	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGCCTATTCCTGTCG	NA	False	NA	NA	False	NA	NA	NA	96446274	96534735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96447112_96447268_96447405_96448132_96448266_96449911_96450092_96451141_96451292_96452640_96452816_96454209_96454307_96455236_96455364_96455714_96455874_96457038_96457290_96459719_96459955_96460607_96460777_96460868_96460975_96462310_96462456_96462880_96463076_96466437_96466554_96467355_96467462_96467555_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471267_96471568_96471681_96472201_96472318_96473598_96473779_96474884_96475028_96475471_96475703_96478368_96478448_96479129_96479415_96479651_96479778_96481595_96481740_96482719_96482922_96483969_96484120_96486725_96486878_96487129_96487253_96487949_96488070_96489616_96489858_96491083_96491213_96491607_96491779_96496128_96496242_96496373_96496499_96497169_96497339_96498598_96498803_96500059_96500113_96500196_96500268_96501257_96501357_96501906_96502015_96515257_96515535_96533962
87528	chr3	+	967	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	56	36	-3	-36	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	12005	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATGAATTTTCTAATAAA	3613	False	NA	NA	False	NA	NA	NA	88486970	88495690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
87529	chr6	-	3743	11	NNC	ENSMUSG00000030189.16	novel	1853	10	NA	NA	-14	2199	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	879.012224033318	1351	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGATTACCTGGGAGTATG	4957	False	NA	NA	False	NA	NA	NA	131365415	131339618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131352936_131353144_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131364980_131365026_131365348
87530	chr5	+	2050	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	291	4	-138	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	243	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	618	False	NA	NA	False	NA	NA	NA	77099485	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
87531	chr6	-	1491	10	NNC	ENSMUSG00000030189.16	novel	1853	10	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	925.452655344373	1324	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGGCTGTGTAACTAGT	4961	False	NA	NA	False	NA	NA	NA	131365411	131341822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131352936_131353144_131356320_131356444_131357838_131357929_131360463_131360498_131361465_131361530_131365347
87532	chr12	+	3395	1	FSM	ENSMUSG00000098579.3	ENSMUST00000184974.3	65	1	-589	-2741	-589	2741	mono-exon	FALSE	NA	NA	NA	NA	NA	130	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCTGGCTTTCCCCAAT	NA	False	NA	NA	False	NA	NA	NA	28728734	28732129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_28728700_28732100
87533	chr19	-	3137	17	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2081	11	NA	NA	-3	-107	multi-exon	FALSE	non_canonical	0	0	junction_1	202.962194370651	14	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCGCCGCCGCTCCGGCC	5995	False	NA	NA	False	NA	NA	NA	4251638	4242214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4242234_4242747_4242871_4243018_4243252_4243765_4243870_4244464_4244687_4244767_4244899_4244973_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
87535	chr11	-	1276	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	134	223	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	361	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113072	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87536	chr16	-	1030	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	52	3	-34	-3	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACCAGCTGACAAGGCTAT	7185	False	NA	NA	False	NA	NA	NA	18066544	18057650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
87537	chrM	+	1639	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-270	9	-270	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	14	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACAATATGTGAATATAGT	19	False	NA	NA	False	NA	NA	NA	9896	11535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
87538	chr6	+	591	2	Genic_Genomic	ENSMUSG00000107701.2	novel	358	1	NA	NA	-38	21891	multi-exon	FALSE	non_canonical	0	0	junction_1	0	90	6	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTAAAAGAAAATTAGTTTA	NA	False	NA	NA	False	NA	NA	NA	82929722	82952009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_82930147_82951842
87539	chr11	-	4103	17	ISM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	11342	10	11296	-10	3prime_fragment	FALSE	canonical	3	1487	junction_13	210.281424152848	1458	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACTTGAATGGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	53179942	53150650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850
87540	chr7	-	633	6	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5844.15973772107	23	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGCCTGACTGGATTGT	8422	False	NA	NA	False	NA	NA	NA	99132858	99128092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129198_99131497_99131562_99131776_99131908_99132798
87541	chr2	-	1754	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	39	2	-32	-2	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	5376	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
87542	chr17	+	5140	23	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-17106	54124	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2733.21046089644	26	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTCGCCCCCTCTCCGCC	6985	False	NA	NA	False	NA	NA	NA	6680404	6757819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680586_6691899_6692102_6697573_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6706242_6709601_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836_6716919_6719271_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6757654
87543	chr11	-	2467	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	-154	0	84	0	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	1501	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8376	False	NA	NA	False	NA	NA	NA	69572826	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
87544	SIRV3	-	2287	6	Fusion	SIRV3C_SIRV3D	novel	796	3	NA	NA	0	13	multi-exon	TRUE	non_canonical	0	0	junction_1	690.830225163897	8	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGACTTTTACTATCTAATC	NA	False	NA	NA	False	NA	NA	NA	9943	4588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_4784_6061_7229_8120_8208_8755_8976_9189_9299_9434
87545	chr19	+	4302	23	NNC	ENSMUSG00000025001.12	novel	5868	22	NA	NA	-54	-586	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	400.093759672562	1067	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATTTGTTAATTTTCTT	NA	False	NA	NA	False	NA	NA	NA	38919419	38958909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176_38957223_38958141
87546	chr12	+	3391	5	NNC	ENSMUSG00000051721.7	novel	4317	4	NA	NA	-20	-1183	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	29.2264862752949	27	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCTCCAGTTTGAGGAT	NA	False	NA	NA	False	NA	NA	NA	4893373	4908860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_4893452_4898862_4899191_4900126_4901943_4905277_4905393_4907806
87547	chr1	-	2485	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-8	154	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	2068.03757419541	3	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCTGATCTGGAAGATT	NA	False	NA	NA	False	NA	NA	NA	86287130	86278062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284781_86285175_86285828_86285946_86286927
87548	chr6	-	4935	31	NNC	ENSMUSG00000025607.16	novel	3961	24	NA	NA	0	4789	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.3930552945765	52	29	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACTCTACGATGCTGGCC	NA	False	NA	NA	False	NA	NA	NA	30873645	30742763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30742855_30743016_30743070_30744350_30744392_30744858_30744931_30745079_30745181_30745826_30745906_30746260_30746322_30747047_30748987_30749404_30749504_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
87549	chr7	+	1392	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2898.69849753158	26	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499685_46500409_46500483_46501300_46501419_46503406_46503531_46504400
87550	chr1	-	1395	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	57	-1528	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	892.793633614299	46	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAAAAACTGTTTC	NA	False	NA	NA	False	NA	NA	NA	13730713	13695081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695611_13697575_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
87551	chr18	-	5157	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	-23	-2755	-23	2755	mono-exon	FALSE	NA	NA	NA	NA	NA	1436	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	43610884	43605727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_43605700_43610900
87552	chr6	-	1714	6	NNC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3580.56207878037	575	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	NA	False	NA	NA	NA	125143439	125138815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125139065_125139174_125139279_125139906_125140004_125140101_125140400_125142233_125142275_125142514
87553	chr5	-	534	3	FSM	ENSMUSG00000041697.10	ENSMUST00000040154.10	571	3	25	12	25	3	multi-exon	FALSE	canonical	3	7177	junction_2	62.5	71	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTCCGTGAGCTGGACG	4879	False	NA	NA	False	NA	NA	NA	115487015	115483712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115483986_115486623_115486767_115486897
87554	SIRV3	-	1724	10	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-962	multi-exon	FALSE	non_canonical	0	0	junction_1	438.091934655132	3	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGCTTCTCCACCT	NA	False	NA	NA	False	NA	NA	NA	9943	1962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2010_4007_4080_4567_4784_6061_6334_7270_7370_7872_7964_8052_8208_8755_8929_9208_9299_9434
87555	chr8	-	3424	15	NNC	ENSMUSG00000022322.9	novel	2156	13	NA	NA	-54	1626	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	106.908314714535	642	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTTATTCCTCTGCTC	NA	False	NA	NA	False	NA	NA	NA	4829621	4784349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_4784482_4784617_4785159_4785447_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
87556	chr11	-	1037	5	NNC	ENSMUSG00000020358.18	novel	2370	7	NA	NA	1354	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1320.76729593066	1	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAACAAAACCCCCAAG	NA	False	NA	22	True	NA	NA	NA	51496320	51491714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_51492306_51493419_51493523_51495226_51495378_51495485_51495645_51496287
87557	chr2	-	3315	7	FSM	ENSMUSG00000009555.17	ENSMUST00000009699.16	1733	7	72	-1654	45	0	multi-exon	FALSE	canonical	3	1063	junction_2	88.3259430870807	617	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	32602724	32595795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
87558	chr2	-	8685	34	Fusion	ENSMUSG00000027193.13_ENSMUSG00000027194.17	novel	3408	20	NA	NA	-21	19	multi-exon	FALSE	non_canonical	0	0	junction_20	518.92339988624	774	64	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGATCTTTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	94268502	94158262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_94158831_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851_94237312_94240803_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
87559	chr12	+	3559	2	Intergenic	novelGene_4371	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605026	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68608127_68609813
87560	chr2	+	3519	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-62	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	834.411708575739	44	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGTGTCTGACTCCTCCTT	NA	False	NA	NA	False	NA	NA	NA	162896544	162926605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896633_162901475_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
87561	chr17	-	1836	8	NIC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	44	-6	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	63.4282496774336	180	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATTGACTGATTCTAC	NA	False	NA	NA	False	NA	NA	NA	26309150	26300209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26309070
87562	chr3	+	4051	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	15	12	-5	-12	multi-exon	FALSE	canonical	0	0	junction_6	154.691388272057	1129	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTTCTCTTATTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	67337443	67383850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
87563	chr13	+	746	1	Intergenic	novelGene_1506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	295	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAATAAACCTGCGTTTA	2082	False	NA	NA	False	NA	NA	NA	97201515	97202261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_97201500_97202300
87564	chr2	-	4298	8	Antisense	novelGene_ENSMUSG00000023393.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27	127	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATCACCTGACAAATCC	2729	False	NA	NA	False	NA	NA	NA	180384066	180375833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_180378574_180378795_180378895_180379382_180379470_180379593_180379729_180380187_180380232_180381606_180381726_180382316_180382383_180383058
87565	chr4	-	2539	7	NIC	ENSMUSG00000041459.16	novel	1904	7	NA	NA	-67	-2	intron_retention	FALSE	canonical	3	40	junction_1	394.331255277703	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTTTGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	148711543	148701321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148701501_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
87566	chr16	-	2089	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	517	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
87567	chr14	-	2430	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	4	448	4	13	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	120	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959655	55953320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
87568	chr2	+	2671	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	-10	-1024	-10	1024	multi-exon	FALSE	canonical	3	568	junction_2	33	1223	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATCCAGTTCTGCTCTGG	7142	False	NA	NA	False	NA	NA	NA	119181699	119185886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_119182118_119182837_119182874_119183669
87569	chr6	-	3376	12	FSM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	-18	-1630	1	-6	multi-exon	FALSE	canonical	3	874	junction_11	2433.70552759395	60	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAATTACTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	51446824	51438109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
87570	chr11	-	5409	3	Intergenic	novelGene_2282	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1235	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTGTCAGACATCCTGG	NA	False	NA	NA	False	NA	NA	NA	57450879	57429611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57429796_57433763_57434170_57446060
87571	chr11	+	4602	23	NIC	ENSMUSG00000020456.18	novel	621	3	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	1	11	junction_1	147.405951246244	785	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	6241977	6306642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6242514_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
87572	chr6	-	3267	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	-110	-1639	2	0	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	41	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446862	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
87573	chr8	-	1993	7	NNC	ENSMUSG00000038515.11	novel	3013	8	NA	NA	3760	4745	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	127	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTAAATATCCTCTTCC	NA	False	NA	NA	False	NA	NA	NA	13225615	13217276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_13217376_13217804_13217964_13221202_13221382_13222538_13222660_13223625_13223690_13223776_13223948_13224415
87574	chr11	-	5703	2	Intergenic	novelGene_2289	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57433741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57434154_57445632
87575	chr5	-	4655	19	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	82	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCTGTCAGAGGGCA	NA	False	NA	NA	False	NA	NA	NA	75817376	75770017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75770210_75771464_75771611_75776005_75776150_75781503_75781695_75783646_75783765_75797953_75798066_75799622_75799817_75801150_75801257_75801355_75801485_75801768_75801875_75801986_75802096_75806493_75806644_75808404_75808517_75809071_75809173_75810204_75810330_75813209_75813317_75813412_75813517_75813879_75813982_75815069
87576	chr9	-	1988	7	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGATATGAGGGGACGGG	NA	False	NA	NA	False	NA	NA	NA	64085952	64082132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64083007_64083375_64083496_64084220_64084760_64085002_64085086_64085177_64085303_64085507
87577	chr11	-	1151	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	259	223	125	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	53	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33112947	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87578	chr7	+	1641	8	NIC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	27	junction_1	2898.54103342509	5	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46495342_46496962_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
87579	chr5	+	2408	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	128	3711	-3	1091	multi-exon	FALSE	canonical	3	347	junction_1	43.3504937240909	1282	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTAAACATACTGATTTC	NA	False	NA	NA	False	NA	NA	NA	67418035	67445093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
87580	chr6	+	4540	27	NNC	ENSMUSG00000051855.16	novel	2665	13	NA	NA	696	125224	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	142.40491481446	1	107	13	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGAGCGGAAGACGCTGCAG	230	False	NA	NA	False	NA	NA	NA	30742783	30873688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050_30748988_30749403_30749506_30749761_30749902_30750538_30750635_30786490_30786666_30787265_30787403_30787856_30787923_30788527_30788651_30789675_30789781_30790643_30790727_30792868_30793109_30793676_30793769_30801300_30801490_30802559_30802630_30803072_30803213_30862523_30862601_30867543_30867599_30871776_30871859_30872475_30872535_30873598
87581	chr13	-	4194	27	FSM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	-212	-293	-212	293	multi-exon	FALSE	canonical	3	524	junction_21	59.6473487509525	35	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGGATTACTCAGTTTTC	7024	False	NA	NA	False	NA	NA	NA	113064144	113003658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
87582	chr15	-	2797	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	257	-932	-61	-2	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	91	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCATGAGTCTCAGTGGT	697	False	NA	NA	False	NA	NA	NA	36793824	36771015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
87583	chr17	-	3617	20	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	-41	781	combination_of_known_junctions	FALSE	canonical	3	185	junction_18	69.7192629283235	4	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTTTTTGTTTTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	24738223	24726754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104
87584	chr17	-	7424	21	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	-16	35953	intron_retention	TRUE	non_canonical	0	0	junction_1	2477.3594062025	94	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACGTGGGTAGGCGTCC	NA	False	NA	NA	False	NA	NA	NA	6367709	6320661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6320866_6330870_6330976_6337199_6337255_6339258_6339347_6340829_6340953_6345197_6345309_6345995_6346078_6347502_6347602_6348125_6348256_6348421_6348516_6349637_6349693_6351163_6351269_6351675_6351727_6353493_6353579_6354520_6354610_6354850_6354917_6355641_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
87585	chr4	+	6003	4	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	7	3706	intron_retention	FALSE	non_canonical	0	0	junction_3	216.61076201847	46	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTCCCTCTAGAGTG	NA	False	NA	NA	False	NA	NA	NA	98614991	98630423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615078_98621359_98622316_98624682_98629579_98630358
87586	chr16	+	500	1	Intergenic	novelGene_3823	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211539	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
87587	chr19	+	2954	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	10	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	1476	False	NA	NA	False	NA	NA	NA	44282521	44295298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44292383_44294469
87588	chr1	+	9265	15	FSM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	0	4	0	-4	multi-exon	FALSE	canonical	3	1477	junction_7	202.362891350955	1369	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGTGGCTGGAACCTCA	NA	False	NA	NA	False	NA	NA	NA	118555675	118612894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
87589	chr8	-	2127	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	-13	0	-13	0	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	33	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	NA	False	NA	NA	NA	85620563	85613021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
87590	SIRV5	+	532	2	FSM	SIRV5A	SIRV506	552	2	0	20	0	-20	multi-exon	FALSE	canonical	3	11478	junction_1	0	21	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACGCCGTGCAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	1008	2378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV5_+_1150_1987
87591	chr17	-	1208	5	FSM	ENSMUSG00000036438.15	ENSMUST00000143965.8	890	5	-15	-303	-7	-5	multi-exon	FALSE	canonical	3	6557	junction_1	362.950668135492	12	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAATTGTTGCTCTGAATC	NA	False	NA	NA	False	NA	NA	NA	87754291	87740844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743363_87750123_87750155_87754220
87592	chr7	+	1331	12	NIC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	-11	-413	combination_of_known_junctions	FALSE	canonical	3	26	junction_3	1404.19735021368	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGATTGCGTGTAGA	NA	False	NA	NA	False	NA	NA	NA	137039372	137069910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_137039501_137046707_137046817_137054181_137054271_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
87593	chr11	-	2571	19	NNC	ENSMUSG00000020361.14	novel	4618	19	NA	NA	-2	1309	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_18	466.843237098591	1307	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTGTCAACTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	53191286	53152397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53191178
87594	chr14	+	5168	13	NNC	ENSMUSG00000056234.16	novel	4065	10	NA	NA	1	22013	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	267.049880900346	929	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGACCTTCCGGGCGCCGG	NA	False	NA	NA	False	NA	NA	NA	31881822	31923825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779_31902607_31915879_31915904_31920924_31920985_31923599
87595	chr2	+	1696	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-4	83	intron_retention	FALSE	canonical	3	251	junction_2	163	835	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAAGAAGCTAGAA	NA	False	NA	NA	False	NA	NA	NA	104389519	104399260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104390321_104398205_104398836_104398995
87596	chr11	+	1075	2	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-164	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	155	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442337	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442347_62442971
87597	chr8	-	2874	4	FSM	ENSMUSG00000050052.13	ENSMUST00000145695.2	373	4	-9	-2492	-9	387	multi-exon	FALSE	canonical	3	28	junction_3	120.875509880575	1555	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAGAAAAGAAGAAAGCA	4516	False	NA	NA	False	NA	NA	NA	14025041	14001620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_14004136_14005719_14005818_14024540_14024730_14024969
87598	chr4	-	9474	3	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	179	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCTAGAAAAGGTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	42231967	41877123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41880988_42207622_42207630_42226364
87599	chr16	+	3605	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	-19	-1329	4	1321	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	386	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAACGGCTCCTTGGTGG	NA	False	NA	NA	False	NA	NA	NA	36648750	36694404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
87600	chrM	+	1508	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-152	22	-152	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATTACAGGCCTGACAAT	33	False	NA	NA	False	NA	NA	NA	10014	11522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10000_11500
87601	chr5	+	1407	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	3	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	NA	False	NA	NA	NA	104582986	104588916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
87602	chr2	-	3412	25	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	783	1559	411	-1559	3prime_fragment	FALSE	canonical	3	167	junction_12	33.8549807594425	9	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGGGTTATGTCTTGA	NA	False	NA	NA	False	NA	NA	NA	62241792	62161975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558
87603	chr7	-	6560	6	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-68	334	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	28.6454184818445	189	26	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATATATTGAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	27713608	27683944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713445
87604	chr11	-	1665	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	-2	330	-2	-330	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	82	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915332	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
87605	chr11	-	1237	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	173	223	39	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	99	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113033	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87606	chr11	-	1219	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6507.10307810901	575	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113069	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107057_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87607	chr9	+	4507	11	Fusion	ENSMUSG00000032607.13_ENSMUSG00000007815.14	novel	2082	9	NA	NA	6	3845	multi-exon	FALSE	non_canonical	0	0	junction_9	77.4353924249112	2025	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGATTCGGTGAGGATA	NA	False	NA	NA	False	NA	NA	NA	108174074	108183346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108181459_108182531_108182578_108182918
87608	chr4	-	2551	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	-4	38	intron_retention	FALSE	canonical	3	3	junction_7	453.895474796584	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGGTTTTGAAAGTCTG	NA	False	NA	NA	False	NA	NA	NA	148710784	148700028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148701302_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148710501
87610	chr3	+	6543	31	Fusion	ENSMUSG00000103900.2_ENSMUSG00000015714.12	novel	2216	11	NA	NA	-30	-405	multi-exon	FALSE	non_canonical	0	0	junction_11	214.483775610184	918	24	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACTGAAGGAGAGACGGC	4451	False	NA	NA	False	NA	NA	NA	95222527	95264478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959_95231501_95231614_95231707_95231942_95232152_95233027_95233194_95233452_95233586_95234497_95235147_95235857_95236028_95244458_95244577_95245656_95246342_95247215_95247377_95247472_95247622_95248642_95248778_95248969_95249156_95252835_95252909_95253921_95254130_95254307_95254432_95255305_95255409_95257151_95257183_95261850_95262004_95263243_95263491_95264400
87611	chr5	-	764	4	ISM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	1717	2080	1717	-2080	internal_fragment	FALSE	canonical	3	454	junction_2	90.9444274757332	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGGGATGTGCCGGTG	NA	False	NA	NA	False	NA	NA	NA	121043867	121036398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_121036536_121037135_121037369_121039932_121040118_121043658
87612	chrX	+	16409	13	Intergenic	novelGene_3917	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	751	477	10	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCTGGCAAGGATGTGA	NA	False	NA	NA	False	NA	NA	NA	34409636	34849877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34414358_34427071_34427356_34588347_34588523_34588630_34588844_34589150_34589898_34589934_34590677_34591793_34592261_34740537_34745766_34758440_34758748_34820868_34821643_34821748_34824118_34824348_34824710_34849856
87613	chr17	-	1910	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	559	1744	mono-exon	FALSE	NA	NA	NA	NA	NA	65	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTAAGGGAGCGCGAGCG	NA	False	NA	NA	False	NA	NA	NA	40159159	40157249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157200_40159200
87614	chr17	-	1910	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	565	1750	mono-exon	FALSE	NA	NA	NA	NA	NA	248	38	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAGCGCGAGCGAAGCCG	NA	False	NA	NA	False	NA	NA	NA	40159153	40157243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157200_40159200
87615	chr2	-	2490	16	Fusion	ENSMUSG00000056718.3_ENSMUSG00000039128.14	novel	600	7	NA	NA	-5806	0	multi-exon	FALSE	non_canonical	0	0	junction_8	541.106134588113	365	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTCATCATTGCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	5873551	5814365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_5814830_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645_5850010_5859624_5859728_5860788_5860857_5865835_5865887_5867110_5867217_5868386_5868484_5869155_5869269_5871161_5871218_5872898
87616	chrX	-	933	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	41	1	-17	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232959	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
87617	chr17	-	2529	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	1102	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGAGGCTGTGTGCTCA	NA	False	NA	NA	False	NA	NA	NA	36149124	36144811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146035_36146081_36146932_36147054_36147166_36147519_36147629_36148888
87618	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
87619	chr1	+	2870	12	NNC	ENSMUSG00000026575.16	novel	687	6	NA	NA	-23	20630	intron_retention	TRUE	non_canonical	0	0	junction_6	66.8896958055475	1198	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGGCGCACGCCCTACCT	7361	False	NA	NA	False	NA	NA	NA	164200814	164285924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_164200904_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584_164266109_164266867_164266952_164269025_164269211_164270763_164270919_164281056_164281189_164285329_164285469_164285706
87620	chr7	-	3678	28	Fusion	ENSMUSG00000052296.8_ENSMUSG00000063802.6	novel	3862	24	NA	NA	11	-999	multi-exon	FALSE	canonical	1	5	junction_21	114.191245739621	97	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGTGAGTTAGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	4687969	4635492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_4635599_4636057_4636140_4636271_4636343_4636467_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687566_4687892
87621	chrX	-	890	5	NNC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	3	-4992	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	116.215317406958	34	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTCTCTAATTCCCGTT	NA	False	NA	NA	False	NA	NA	NA	36373972	36366094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_36366428_36368081_36368181_36372567_36372675_36372800_36372908_36373728
87622	chr2	+	7295	3	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2384	2661	intron_retention	FALSE	canonical	3	97	junction_2	297.5	157	47	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGTCTTTTGTTATAA	NA	False	NA	NA	False	NA	NA	NA	135488442	135496644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_135490892_135491052_135492672_135493417
87623	chr5	-	731	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	181	3	-16	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	1167	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2245	False	NA	NA	False	NA	NA	NA	129916130	129909999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
87624	chr19	+	1530	4	FSM	ENSMUSG00000025066.11	ENSMUST00000099353.6	1657	4	73	54	73	-54	multi-exon	FALSE	canonical	3	1732	junction_1	59.801523577767	3161	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAATTTGTTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	47720193	47723973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_47720261_47721068_47721428_47721957_47722351_47723262
87625	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1003	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
87626	chr15	-	3774	17	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	18	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	396.74480147823	695	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATCTTCTTTCGTGAG	NA	False	NA	NA	False	NA	NA	NA	96953819	96892697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894072_96894217_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
87627	chr2	-	1912	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	-28	500	-28	-500	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	173	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGACGATGGTGGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	152174360	152158753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
87628	chr9	+	1126	9	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	19	72829	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	153.954538744397	113	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTATTTTACTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	109760886	109985852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109856966_109857142_109966126_109966247_109984166_109984175_109985699
87629	chr6	-	1180	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13741	16	4172	1	mono-exon	FALSE	NA	NA	NA	NA	NA	12	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122705963	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706000
87630	chr6	-	9155	12	NNC	ENSMUSG00000004446.13	novel	2415	7	NA	NA	-5	55713	intron_retention	FALSE	non_canonical	0	0	junction_1	465.389057893083	2179	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGGCGCGCCTACGTCA	NA	False	NA	NA	False	NA	NA	NA	120893819	120813177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120813317_120825414_120825581_120839817_120839926_120842528_120842685_120847724_120847794_120853160_120853307_120863637_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
87631	chr15	-	5568	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	70	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCAGTAAGGTCTCTTCT	9489	False	NA	NA	False	NA	NA	NA	22705401	22699736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704553_22704649
87632	chrM	+	431	1	FSM	ENSMUSG00000064342.1	ENSMUST00000082393.1	69	1	-426	64	-426	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	103	False	NA	-44	True	NA	NA	NA	3279	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3300_3700
87633	chr11	-	1858	5	ISM	ENSMUSG00000020358.18	ENSMUST00000109103.4	1437	8	2085	-1073	2085	-1	3prime_fragment	FALSE	canonical	3	1798	junction_2	609.891127579341	588	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTTCTTGACCTTGAG	NA	False	NA	NA	False	NA	NA	NA	51495589	51490927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_51492306_51492576_51492718_51493419_51493523_51495226_51495359_51495485
87634	chr18	-	4954	16	FSM	ENSMUSG00000024370.18	ENSMUST00000133181.2	4133	16	-86	-735	-86	3	multi-exon	FALSE	canonical	3	906	junction_9	78.8679909722569	26	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACTGTTCTTTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	34784874	34764000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
87635	chr3	+	2192	17	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-3	-357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	337.05227246675	5239	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTGCTGATTTTT	4853	False	NA	NA	False	NA	NA	NA	34074250	34124114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065_34123590_34124060
87636	chr11	+	3150	19	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	12977	246	7551	-244	3prime_fragment	FALSE	canonical	3	454	junction_1	102.170337073819	3	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAGGCCCTCCCACTTC	NA	False	NA	NA	False	NA	NA	NA	75390622	75400029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
87637	chr5	-	3401	16	Antisense	novelGene_ENSMUSG00000056310.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	488	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGACAGAGGCGGGCCCA	NA	False	NA	NA	False	NA	NA	NA	130370786	130285900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_130286034_130287772_130287894_130291657_130291781_130295821_130295924_130296733_130296928_130298003_130298287_130303459_130303583_130306771_130306890_130310619_130310673_130316081_130316201_130317691_130317802_130325462_130325641_130328742_130328879_130354437_130354549_130364084_130364253_130369457
87638	chr11	+	6220	6	FSM	ENSMUSG00000036819.15	ENSMUST00000147163.8	4359	6	5	-1866	5	1866	multi-exon	FALSE	canonical	3	27	junction_3	10.3614670775909	120	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACAGTCTGTGTGCATTC	9486	False	NA	NA	False	NA	NA	NA	59340875	59351259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132
87639	chr2	+	5333	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	578	2411	intron_retention	FALSE	non_canonical	0	0	junction_12	428.914391872732	8	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAAACCAGAAGACCTCAT	1239	False	NA	NA	False	NA	NA	NA	26279945	26289545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285888_26286008
87640	chr7	-	826	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	-2	intron_retention	FALSE	canonical	3	11064	junction_6	2335.47851984699	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCCTGCCTGGCCTGCC	NA	False	NA	NA	False	NA	NA	NA	44778160	44775348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
87641	chr16	-	1736	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	24	1328	-3	7	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGAGCCCCTGGG	NA	False	NA	NA	False	NA	NA	NA	16929082	16906507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
87642	chr3	+	2024	3	FSM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	-55	-20	-55	20	multi-exon	FALSE	canonical	3	334	junction_2	11.5	695	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATGTGGTTGTACATGT	NA	False	NA	NA	False	NA	NA	NA	145629961	145640131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_145630271_145636160_145636450_145638705
87643	chr15	+	1990	8	Antisense	novelGene_ENSMUSG00000022283.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	267	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAACATAAATCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	36595903	36601196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36596346_36596807_36596898_36597205_36597786_36598216_36598557_36599195_36599291_36599451_36599721_36600841_36600932_36601112
87644	chr2	+	3051	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	1494	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	661	False	NA	NA	False	NA	NA	NA	26279367	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285980_26286046
87645	chrX	+	1208	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	20	12	17	-12	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAAAACCAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	36059323	36062448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
87646	chr16	+	3280	22	NNC	ENSMUSG00000085337.2	novel	2745	2	NA	NA	9930	23064	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1334	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCCGCCGGAAGTTGGCC	2228	False	NA	NA	False	NA	NA	NA	91418285	91443813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91418636_91418733_91418850_91419779_91419925_91420259_91420389_91421213_91421359_91422207_91422409_91424914_91425070_91425311_91425560_91426928_91427132_91427495_91427603_91427863_91427959_91430761_91430994_91432880_91433049_91433392_91433480_91433878_91433965_91434814_91434946_91435616_91435683_91436226_91436342_91438101_91438281_91438487_91438581_91439847_91440041_91443777
87647	SIRV1	-	2011	8	NNC	SIRV1A	novel	1561	6	NA	NA	37	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2576.50791988391	1355	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTGAATCGATGCATA	NA	False	NA	NA	False	NA	NA	NA	11606	1007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6427_6557_6814_7552_7815_10282_10367_10444_10792_10897_11194_11406
87648	chrM	+	2011	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1059	5	-1059	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	77	False	NA	-15	True	NA	NA	NA	1691	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1700_3700
87649	chrM	+	885	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	259	0	259	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	107	False	NA	136	True	NA	NA	NA	14403	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
87650	chr2	+	3541	1	FSM	ENSMUSG00000082908.5	ENSMUST00000119272.2	253	1	-116	-3172	-116	3172	mono-exon	FALSE	NA	NA	NA	NA	NA	153	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACATTCTGAAAAGACATG	NA	False	NA	NA	False	NA	NA	NA	87356372	87359913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_87356400_87359900
87651	chr11	-	2673	20	NNC	ENSMUSG00000020361.14	novel	4618	19	NA	NA	23	1306	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	455.203172196591	1325	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTAAGTTGTCAACTTTG	NA	False	NA	NA	False	NA	NA	NA	53191215	53152400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886_53191002_53191117
87652	chr10	-	4391	7	NNC	ENSMUSG00000025353.6	novel	1573	4	NA	NA	2006	12280	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGGAGCTACAGGAGCAG	NA	False	NA	NA	False	NA	NA	NA	128655454	128641490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128641551_128642034_128643489_128649905_128650014_128650434_128650553_128652578_128652739_128652823_128652928_128653067
87653	chr10	+	9616	13	Antisense	novelGene_ENSMUSG00000084569.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	85	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTCCAGGCAACTAGGGT	NA	False	NA	NA	False	NA	NA	NA	62645051	62744775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62713928_62715913_62744659
87654	chr7	+	3294	4	ISM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	10314	36	-1373	-36	3prime_fragment	FALSE	canonical	3	1624	junction_2	79.984720763128	769	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTGACCATGGCCCTA	NA	False	NA	NA	False	NA	NA	NA	16525578	16532163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_16527806_16529682_16529878_16529948_16530084_16531426
87655	chr13	+	5022	2	Intergenic	novelGene_1550	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	172	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113855139	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113856742_113856958
87657	chr2	-	2675	11	NNC	ENSMUSG00000039449.15	novel	3522	10	NA	NA	3762	-516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	70.6334906400639	20	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCTTTTTTTAAAAATT	NA	False	NA	NA	False	NA	NA	NA	4653130	4627384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4627571_4627657_4628513_4628586_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051
87659	chr2	-	4485	16	NIC	ENSMUSG00000026669.15	novel	4867	20	NA	NA	-3201	-2	intron_retention	FALSE	canonical	3	627	junction_3	55.3900913722141	124	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGGCTGTGAAACGTGAC	NA	False	NA	NA	False	NA	NA	NA	5013331	4995536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4996288_4996905_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290
87660	chr6	-	1417	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	4	-1	4	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	2396	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	NA	False	NA	NA	NA	125142732	125138815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
87661	chr13	-	985	7	NNC	ENSMUSG00000021660.15	novel	888	6	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3100.37956905638	99	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453488	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98451786_98451910_98452737_98452807_98453373
87662	chr15	+	1558	14	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-3	3	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	147.555385248985	17	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTTTTTCTTTGTGA	2120	False	NA	NA	False	NA	NA	NA	102379084	102407319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
87663	chr8	-	2816	4	NNC	ENSMUSG00000044600.15	novel	642	4	NA	NA	14	-783	intron_retention	TRUE	non_canonical	0	0	junction_3	224.602364685286	8	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCACTTATTATCTCAT	NA	False	NA	NA	False	NA	NA	NA	73324879	73319814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73321653_73322699_73322791_73323809_73324190_73324372
87664	chr9	+	659	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6544.36268554853	26	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATCTCATGTGTGGACT	NA	False	NA	NA	False	NA	NA	NA	120400582	120403496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_120400590_120401196_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
87665	chrM	+	839	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	304	1	304	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	152	False	NA	-81	True	NA	NA	NA	14448	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
87666	chr11	-	4117	5	NIC	ENSMUSG00000020390.13	novel	1792	6	NA	NA	19	-69	intron_retention	FALSE	canonical	3	629	junction_3	65.1704495918204	37	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAACCACTTGTGCAGTC	NA	False	NA	NA	False	NA	NA	NA	51891287	51876392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51888726_51891119
87667	chr1	-	361	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	678	1	NA	NA	-161	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24653264_24653744
87668	chr11	+	4075	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	1	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	554.648697465342	37	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332183	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333465_72333624_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
87669	chr7	+	7655	39	NNC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	2	12704	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_32	225.342480192931	331	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGATCCGGAAGTCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	118339973	118454893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118339999_118340159_118340342_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418_118442789_118442885_118442975_118443922_118444093_118444456_118445320_118447672_118447796_118449841_118449912_118451624_118452564_118454845
87670	chr19	+	1240	2	ISM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	11	5	11	0	intron_retention	FALSE	canonical	3	5824	junction_1	0	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4880	False	NA	NA	False	NA	NA	NA	9960020	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_9960348_9961544
87671	SIRV6	+	1289	6	NIC	SIRV6A	novel	1311	6	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	472	junction_2	7056.57479518215	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3124	11824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11034_11109_11205
87672	chr1	+	1678	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-208	-252	-208	252	mono-exon	FALSE	NA	NA	NA	NA	NA	254	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTCTCCCCCAAACACTA	NA	False	NA	NA	False	NA	NA	NA	60742882	60744560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60742900_60744600
87673	chr18	+	2119	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	346	6	83	-3	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	39885	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAATGTGTCTTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	77861774	77870563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
87674	chr15	-	3891	17	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	396.74480147823	1839	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96953837	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96893915_96893956_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
87675	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	77	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
87676	chr11	+	2610	20	Antisense	novelGene_ENSMUSG00000020361.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	101	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAACGAAACGTTCTCGC	NA	False	NA	NA	False	NA	NA	NA	53152404	53191293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_53152642_53153089_53153252_53153705_53153827_53155860_53155971_53156752_53156876_53157791_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166050_53171297_53171538_53174353_53174490_53174926_53175029_53177680_53177801_53179848_53179989_53183080_53183141_53190885_53191009_53191262
87677	chr7	+	7735	37	NNC	ENSMUSG00000006599.14	novel	2736	15	NA	NA	-35629	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	279.701604668834	850	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	46409897	46473224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46410875_46412366_46412637_46414241_46414350_46416517_46416631_46417455_46417576_46418359_46418515_46418714_46418836_46421026_46421605_46421894_46421967_46422542_46422694_46424237_46424362_46425188_46425375_46426298_46426461_46427446_46427624_46428495_46428585_46432566_46432646_46432901_46433107_46435932_46436069_46437597_46437792_46438353_46438416_46438511_46438624_46440340_46440475_46444852_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
87678	chr14	+	2016	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	577.984357192964	61	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271156	30295581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282585_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
87679	chr16	-	3534	23	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	-52209	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.8727829667892	1076	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGGATATAAGAAATTCA	NA	False	NA	NA	False	NA	NA	NA	18297811	18225643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18226069_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105_18245307_18248557_18248625_18255308_18255366_18256249_18256394_18257065_18257141_18259539_18259621_18260496_18260561_18261953_18262032_18273217_18273327_18274769_18274947_18287497_18287632_18290898_18291000_18291543_18291635_18293429_18293502_18294269_18294370_18296400_18296605_18297604
87681	chr11	-	1227	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	6179.43119065177	226	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113072	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110912_33111144_33111226_33111547_33111628_33112921
87682	chr17	+	2133	3	ISM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	2	-742	2	742	intron_retention	FALSE	canonical	3	686	junction_1	459	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACAGTTTTGAATCTGTA	NA	False	NA	NA	False	NA	NA	NA	79223930	79228477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_79223955_79225785_79225902_79226484
87683	chr8	-	7981	48	NNC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-12	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	362.423311068167	1624	41	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTCATGACATGCATAT	NA	False	NA	NA	False	NA	NA	NA	96534073	96446274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455207_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
87684	chr1	+	2355	13	Antisense	novelGene_ENSMUSG00000039630.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	110	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGCGGGACACCGC	NA	False	NA	NA	False	NA	NA	NA	178156602	178163975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_178156975_178157432_178157505_178157729_178157912_178158156_178158411_178158656_178158827_178158913_178159041_178159397_178159525_178159661_178159924_178160563_178160673_178161109_178161207_178161446_178161592_178163446_178163521_178163611
87685	chr1	-	2109	13	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	36	6172	0	210	5prime_fragment	FALSE	canonical	3	5685	junction_12	952.613014584388	343	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGAGGTTTCGGAGGCAG	NA	False	NA	NA	False	NA	NA	NA	86287086	86278612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
87686	chr17	+	2418	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	6	-575	6	575	mono-exon	FALSE	NA	NA	NA	NA	NA	73	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTCGGGGGGCGGTGGGG	NA	False	NA	-19	True	NA	NA	NA	40157249	40159667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159700
87687	chrM	+	1213	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	381	-49	381	49	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTATATGTCTTTCTCAAT	302	False	NA	19	True	NA	NA	NA	5708	6921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5700_6900
87688	chr8	+	6416	19	FSM	ENSMUSG00000031753.17	ENSMUST00000165867.8	2442	19	-3644	-330	-3644	-2	multi-exon	FALSE	canonical	0	0	junction_1	97.5620252220714	27	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCATTGTGTTGGGTCC	5550	False	NA	NA	False	NA	NA	NA	111569587	111608857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_111573445_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
87689	chr19	+	848	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	72	9	-5	-3	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCAGCTTCTTTTCTTTGTG	4941	False	NA	NA	False	NA	NA	NA	9960081	9962453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
87690	chr3	-	6422	7	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	4	-2	intron_retention	TRUE	non_canonical	0	0	junction_1	9.31694990624912	764	124	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTTCTCATGGTCATGG	NA	False	NA	-110	True	NA	NA	NA	75563034	75554754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_75556298_75557450_75557663_75557752_75560358_75560435_75560651_75561051_75562145_75562186_75562869_75562962
87691	chr13	-	2946	2	NIC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	76	237	intron_retention	FALSE	canonical	3	472	junction_1	0	4	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATTAAGAATTTTCA	NA	False	NA	NA	False	NA	NA	NA	34314261	34310493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_34313338_34314159
87692	chr16	+	5267	1	Antisense	novelGene_ENSMUSG00000052384.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3650	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTGAATGAATGAATGAAT	NA	False	NA	NA	False	NA	NA	NA	31966893	31972160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_31966900_31972200
87693	chr4	+	4317	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-244	-933	-230	933	intron_retention	FALSE	canonical	3	363	junction_2	40.8765077873452	1229	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTCTTAAAAACAAACTAAG	NA	False	NA	NA	False	NA	NA	NA	98614740	98627650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
87694	chr9	+	4917	9	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	-6	0	intron_retention	FALSE	canonical	3	217	junction_6	153.733535703827	410	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	9100	False	NA	NA	False	NA	NA	NA	15217537	15228274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
87695	chr16	-	564	1	Intergenic	novelGene_3733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1284	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
87696	chr10	+	929	4	Antisense	novelGene_ENSMUSG00000118400.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	280	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGGTGTCGGATGAACCT	6862	False	NA	NA	False	NA	NA	NA	128383982	128512527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128384301_128384786_128384843_128384956_128384967_128511982
87697	chr10	+	2911	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	23	-1143	-2	1143	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	1039	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGGCAAATTGTGCATAT	NA	False	NA	NA	False	NA	NA	NA	126877823	126883377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
87698	chr7	-	2278	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	44	11	44	-6	multi-exon	FALSE	canonical	3	356	junction_2	34	2	88	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTGATAAACTCTTACGT	3905	False	NA	NA	False	NA	NA	NA	45175648	45172351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45172747_45173162_45174816_45175418
87699	chr15	-	1144	9	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	54	245	1	-241	5prime_fragment	FALSE	canonical	3	16287	junction_8	5155.41004067572	71	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGCCATGGTCGCTTCC	3572	False	NA	NA	False	NA	NA	NA	79967553	79962236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
87700	chr4	+	3084	2	NNC	ENSMUSG00000097620.8	novel	2116	2	NA	NA	-2643	631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	72	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGTGGGAAGGCTATCGTC	NA	False	NA	NA	False	NA	NA	NA	140840327	140846029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140843179_140845796
87701	chrM	+	1484	2	Genic_Genomic	ENSMUSG00000064356.1_ENSMUSG00000064359.1_ENSMUSG00000064358.1	novel	784	1	NA	NA	18	1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	7	True	NA	NA	False	NA	NA	NA	7783	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_7798_7921
87702	chr3	+	1914	12	FSM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	24	-321	3	321	multi-exon	FALSE	canonical	3	373	junction_11	43.5980892749872	1037	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATAGACACATGTACAA	NA	False	NA	NA	False	NA	NA	NA	36606778	36620197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366_36619446_36619577
87704	chrX	+	5356	12	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	-11772	0	intron_retention	FALSE	non_canonical	0	0	junction_1	532.366135736806	783	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATCTTTATGACTTTGG	NA	False	NA	NA	False	NA	NA	NA	74448461	74497607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74448825_74453151_74453220_74459620_74460448_74461997_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
87705	chr19	+	1096	3	FSM	ENSMUSG00000024661.8	ENSMUST00000235129.2	903	3	-43	-150	0	-1	multi-exon	FALSE	canonical	3	5734	junction_2	45	22	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTCTTTTCTTTGTGAT	4927	False	NA	NA	False	NA	NA	NA	9960067	9962455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9962050_9962144
87706	chr18	-	2577	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1369.48242867478	16	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACCAAAACACTTTGCTG	NA	False	NA	NA	False	NA	NA	NA	64649565	64632729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633723_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
87707	chr11	+	2683	4	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-3	1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	73.5391052434009	64	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	NA	False	NA	NA	NA	62349282	62406860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62349521_62364194_62364239_62403935_62405978_62406501
87708	chrX	+	1128	4	FSM	ENSMUSG00000051827.12	ENSMUST00000063340.12	795	4	-329	-4	-329	4	multi-exon	FALSE	canonical	3	47	junction_3	56.8174464598878	686	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	36508299	36513343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36513113
87710	chr19	-	6401	12	NNC	ENSMUSG00000084957.4	novel	838	5	NA	NA	-88501	490	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	69.9871298676224	797	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	54021559	53917801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586_53932834_53975884_53976813_53991437_53991576_54005977_54006109_54014778_54014968_54016146_54016270_54017897_54018036_54018289_54018418_54019502
87711	chr17	-	2320	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAATTGGAAAAAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	36149124	36144826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145616_36145856_36146932_36147054_36147166_36147519_36147629_36148888
87712	chr16	-	1746	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	38	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.2773504263389	796	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGAGTTATTCTTTTC	3926	False	NA	NA	False	NA	NA	NA	18245316	18225627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18226073_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
87713	chr11	+	562	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	198	562	-126	1	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	170	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTAGTCTTGAAGTC	4155	False	NA	NA	False	NA	NA	NA	100210908	100212360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
87714	chr8	+	1975	7	Fusion	ENSMUSG00000069862.7_ENSMUSG00000015016.9	novel	1798	5	NA	NA	15557	32	multi-exon	TRUE	non_canonical	0	0	junction_1	0	117	76	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGCCAG	NA	False	NA	NA	False	NA	NA	NA	123517873	123933792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_123517884_123549534_123549697_123568131_123568951_123570659_123570701_123785964_123786127_123889364_123889449_123933095
87715	chr2	+	2336	7	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	19917	0	-141	0	3prime_fragment	FALSE	canonical	3	2736	junction_1	195.581753295706	96	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162916523	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
87716	chr9	+	908	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	69	0	69	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78099297	78116631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
87717	chr2	-	3702	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	13	483	13	-483	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	407	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGGAAATCAAGCACAGGA	NA	False	NA	NA	False	NA	NA	NA	121337133	121322874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
87718	chr17	+	1315	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1258	0	5	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	182	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTTTTCCTTGCACAC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
87719	chr4	+	4560	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-27125	1999	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	30.3618181273783	2002	88	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTCCAATAAACTAAAGG	9722	False	NA	NA	False	NA	NA	NA	145524681	145558511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145524827_145541336_145541383_145551778_145551837_145552678_145552806_145554256_145555736_145555806
87720	chr16	+	546	1	Intergenic	novelGene_3677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	199	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGACTCCTTGGTCCGTCT	NA	False	NA	NA	False	NA	NA	NA	57211475	57212021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
87721	chr7	+	2001	8	FSM	ENSMUSG00000031029.7	ENSMUST00000033342.7	2514	8	325	188	325	-188	multi-exon	FALSE	canonical	3	2245	junction_2	107.423632105296	813	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGCAAGTAGAATGCTAAT	NA	False	NA	NA	False	NA	NA	NA	108533948	108541970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_108534015_108536952_108537024_108537242_108537323_108537615_108537754_108539396_108539489_108539850_108539988_108540100_108540215_108540667
87722	chrX	-	8338	36	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	-100646	2557	intron_retention	TRUE	non_canonical	0	0	junction_7	197.610286438035	2235	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAATTCTTCAAGACC	NA	False	NA	NA	False	NA	NA	NA	99770820	99663931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491_99670192_99670306_99670423_99677442_99677634_99679287_99679381_99681887_99682055_99682280_99682377_99708340_99708449_99709269_99709453_99713512_99713577_99720892_99721023_99723448_99723511_99723614_99723719_99732661_99732721_99734119_99734304_99738474_99738581_99739603_99739747_99741034_99741147_99747646_99747730_99748393_99748508_99755395_99755554_99755667_99755767_99757481_99757612_99759184_99759362_99759878_99759983_99760934_99761013_99761540_99761640_99762097_99762276_99768246_99768362_99769730_99769855_99770062
87723	chr2	+	2650	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	578	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	428.914391872732	2	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	1239	False	NA	NA	False	NA	NA	NA	26279945	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285834_26286226
87724	chr11	+	4375	23	NIC	ENSMUSG00000020456.18	novel	702	3	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_1	139.064294839378	794	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	6241982	6306642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6242292_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
87725	chr18	-	959	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	21	-15	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	37	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
87726	chr2	-	2991	3	Antisense	novelGene_ENSMUSG00000027523.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_2	2	1474	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGCCCTCTAGATTG	534	False	NA	NA	False	NA	NA	NA	174169171	174163257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_174165759_174167686_174167944_174168938
87728	chr4	+	5387	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	58	42994	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	84.2368090563739	4050	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	146206999	146257998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
87729	chr18	-	1842	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	153	750	0	121	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCAGAAAAAGCAGTAGGTA	NA	False	NA	NA	False	NA	NA	NA	64649570	64633467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
87730	chr9	+	1954	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	238	5	-72	-5	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAATTTCCTGTATTCTCT	NA	False	NA	NA	False	NA	NA	NA	108183565	108215128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
87731	chr1	-	8654	45	NNC	ENSMUSG00000026193.16	novel	8043	45	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_14	528.431676936652	2481	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATGTGGACGTCATTTC	NA	False	NA	NA	False	NA	NA	NA	71692331	71624682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643750_71644174_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
87732	chr4	-	3664	10	NNC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	3458	22801	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	900	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGACCGCGGGGACTGTG	NA	False	NA	NA	False	NA	NA	NA	122754967	122730038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122730172_122737786_122737896_122738208_122738339_122739763_122739831_122742221_122742328_122747382_122747474_122748171_122748267_122749592_122749669_122751300_122753166_122753975
87733	chr2	+	4271	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-15	-26	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	52.761493041128	2180	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAACATTTAAATCA	NA	False	NA	NA	False	NA	NA	NA	152068780	152123746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152090618_152090732_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
87734	chr19	-	525	1	FSM	ENSMUSG00000057605.5	ENSMUST00000077435.5	888	1	406	-43	406	43	mono-exon	FALSE	NA	NA	NA	NA	NA	278	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAACGGGGGGGAGGGGGG	2605	False	NA	NA	False	NA	NA	NA	45439228	45438703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_45438700_45439200
87735	chr3	+	747	2	Antisense	novelGene_ENSMUSG00000047676.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	11	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGCTATCATTTCTAACA	NA	False	NA	NA	False	NA	NA	NA	149778211	149779257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_149778731_149779029
87736	chr5	+	1283	5	Antisense	novelGene_ENSMUSG00000066551.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	213	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCTCTCCGCTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	148985042	148989826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148985723_148986535_148986712_148987104_148987251_148987397_148987562_148989709
87737	chr4	-	4077	12	Antisense	novelGene_ENSMUSG00000028252.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	867	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAGGGGAAAAGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	21750109	21727039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_21727196_21727385_21727913_21730392_21730503_21732216_21732299_21732484_21732559_21735414_21735469_21740591_21740678_21742610_21742703_21743244_21743312_21746346_21746428_21746653_21746773_21747480
87738	chr19	+	4874	7	Antisense	novelGene_ENSMUSG00000037071.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCGTGCCTTTATCCCA	4534	False	NA	NA	False	NA	NA	NA	44382904	44398990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_44386557_44388579_44388810_44390127_44390338_44391603_44391734_44394924_44395200_44395824_44396023_44398811
87740	chr4	-	4621	9	FSM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	-1687	0	-1687	0	multi-exon	FALSE	canonical	3	172	junction_5	25.18928343562	9849	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTGCACTTGATTGT	4406	False	NA	NA	False	NA	NA	NA	132613507	132580811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
87741	chr2	+	1541	8	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4828.58011833538	7	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7481	False	NA	NA	False	NA	NA	NA	75489610	75496465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489633_75491809_75491933_75492014_75492162_75492239_75492430_75493914_75494059_75495371_75495495_75495577_75495646_75495741
87742	chr2	-	4039	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	16	143	16	-143	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	520	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTTGGCTCAACAGTAG	NA	False	NA	NA	False	NA	NA	NA	121337130	121322534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
87743	chr6	+	1153	1	Antisense	novelGene_ENSMUSG00000118448.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCGTTCAAGGCCAGTGGA	955	False	NA	NA	False	NA	NA	NA	122366866	122368019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122366900_122368000
87744	chr1	-	3195	11	FSM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	53	0	-8	0	multi-exon	FALSE	canonical	3	484	junction_1	31.3043128019128	930	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAGTAAATATAGCCG	NA	False	NA	NA	False	NA	NA	NA	36749036	36737194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
87745	chr5	-	6034	9	NNC	ENSMUSG00000000568.16	novel	6811	9	NA	NA	202	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1591.25186076089	635	46	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCATTTTTTTTGCACTG	NA	False	NA	NA	False	NA	NA	NA	100126281	100103799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100105965_100106072_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
87746	SIRV10001	-	8874	1	Antisense	novelGene_SIRV10001A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	317	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTTTTCCATATGT	NA	False	NA	NA	False	NA	NA	NA	9941	1067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV10001_-_1100_9900
87747	chr2	+	1613	1	Genic_Genomic	ENSMUSG00000026969.4	novel	NA	NA	NA	NA	181	871	mono-exon	FALSE	NA	NA	NA	NA	NA	50	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGATTCTGTCTGGGTA	NA	False	NA	NA	False	NA	NA	NA	25111550	25113163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_25111600_25113200
87748	chr2	-	8516	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-1809	-8	intron_retention	TRUE	non_canonical	0	0	junction_1	529.141521712292	68	98	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTTTAAAGAGAAAAGACC	528	False	NA	NA	False	NA	NA	NA	177271812	177261004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177261033_177261788_177263288_177263479_177265632_177266768_177271583_177271789
87749	chrM	-	1547	2	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGTAATTATGAACATCAT	-60	True	NA	NA	False	NA	NA	NA	11538	9875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_11355_11470
87750	chr10	-	7653	13	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-2971	1395	combination_of_known_junctions	FALSE	canonical	3	5	junction_12	66.5530281471516	3	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCCTAGAACCAAGC	NA	False	NA	NA	False	NA	NA	NA	62737868	62647005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649192_62649302_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62737813
87751	chr7	-	1801	11	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	292	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	9010.55944378594	10	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398916	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216_126398479_126398829
87752	chr5	-	2213	12	FSM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	153	1	101	-1	multi-exon	FALSE	canonical	3	487	junction_1	58.8981471316135	65	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACACTGGCTTCTGTGACT	NA	False	NA	NA	False	NA	NA	NA	125417982	125354153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
87753	chr4	+	2054	1	Antisense	novelGene_ENSMUSG00000050550.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTGGGAAGGGACGT	NA	False	NA	NA	False	NA	NA	NA	18843700	18845754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_18843700_18845800
87755	chr2	+	4865	8	NNC	ENSMUSG00000037523.14	novel	2867	7	NA	NA	13	2054	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	64.7929197442096	10	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCATTGATTTGACAGGCA	7277	False	NA	NA	False	NA	NA	NA	131075999	131091999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283_131089064_131089106
87756	SIRV6	+	1279	7	ISM	SIRV6A	SIRV604	1537	10	757	-1	-441	1	3prime_fragment	TRUE	canonical	0	0	junction_1	8477.07649422187	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACTTAGTTCAATCTTC	NA	False	NA	NA	False	NA	NA	NA	1844	11838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV6_+_2027_2470_2621_2740_2829_3106_3165_10724_10819_11034_11109_11205
87757	chr9	+	1710	7	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	562.32780080266	13	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183597	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846_108214349_108214565
87758	chr12	-	6568	13	NNC	ENSMUSG00000021036.11	novel	6710	12	NA	NA	7	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	161.649225863356	786	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACCTGCCTTTATTCAT	8703	False	NA	NA	False	NA	NA	NA	87435122	87351834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87353225_87353356_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
87759	chr3	+	1348	6	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	13	1349	intron_retention	FALSE	non_canonical	0	0	junction_5	1894.05645111227	292	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGGGGCGATCAGGGAC	3633	False	NA	NA	False	NA	NA	NA	88486990	88497075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495706_88496882
87760	chr17	+	2058	1	Intergenic	novelGene_195	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGGTTTGGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
87761	chr3	-	2086	6	FSM	ENSMUSG00000001017.16	ENSMUST00000049937.13	2012	6	-17	-57	-17	48	multi-exon	TRUE	canonical	3	892	junction_3	230.9202459725	766	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGGTGTGTTAATAT	NA	False	NA	NA	False	NA	NA	NA	90416822	90406214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90413569_90414851_90414934_90416497
87762	chrM	-	1546	1	Antisense	novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS_novelGene_ENSMUSG00000064358.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	6877	False	NA	NA	False	NA	NA	NA	9311	7765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7800_9300
87763	chr11	-	2570	10	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	134	223	0	0	intron_retention	FALSE	canonical	3	16927	junction_8	1793.60603736828	145394	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113072	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547
87764	chr17	+	1891	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	22	0	10	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	64	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4669	False	NA	NA	False	NA	NA	NA	29312764	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29312836_29317370_29317812_29318317
87765	chr15	+	3241	16	NNC	ENSMUSG00000022394.15	novel	3487	17	NA	NA	4	-3	intron_retention	FALSE	canonical	0	0	junction_10	174.115210899756	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGATGATATCAGATG	NA	False	NA	NA	False	NA	NA	NA	81548138	81572513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566863_81568146_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
87766	chr1	-	4754	3	FSM	ENSMUSG00000026281.16	ENSMUST00000112893.2	1040	3	-2933	-781	0	633	multi-exon	FALSE	canonical	3	1366	junction_2	100	127	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCATTTCTTAAGAAATC	2310	False	NA	NA	False	NA	NA	NA	93729656	93719664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93720666_93722447_93722646_93726101
87767	chr3	-	3591	30	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	340.765924033146	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3591	False	NA	NA	False	NA	NA	NA	89959738	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909216_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89956126_89956203_89959696
87768	chr7	+	835	7	Antisense	novelGene_ENSMUSG00000065822.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	225	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCGCGGGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	99128091	99132858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99128156_99128474_99128676_99129080_99129270_99130902_99130999_99131467_99131564_99131778_99131908_99132798
87769	chr7	+	3581	32	NNC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	140.582591882774	3	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGCAGTGTCTCGGTGT	NA	False	NA	NA	False	NA	NA	NA	118339973	118440709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118339999_118340159_118340649_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
87770	chr6	+	1469	3	NNC	ENSMUSG00000040370.14	novel	1374	3	NA	NA	-6	-15	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	145	43	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAATAAATCTTAAAGTCTT	NA	False	NA	NA	False	NA	NA	NA	145156919	145162250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145157127_145160909_145160998_145161076
87771	chr2	+	3132	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	-1740	0	-1110	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	707	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	NA	False	NA	NA	NA	92203910	92211562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
87772	chr2	+	3007	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	9348	0	intron_retention	FALSE	canonical	3	40	junction_1	119.417219119448	691	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAGGCCTCATGGTGTTA	NA	False	NA	NA	False	NA	NA	NA	156572759	156606281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156572978_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
87773	chr13	+	853	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	64	21	64	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	4	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	8026	False	NA	NA	False	NA	NA	NA	74554591	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554600_74555400
87774	chr15	+	1578	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	3	-434	3	434	multi-exon	FALSE	canonical	3	177	junction_3	15.1224171348366	792	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGTGA	9562	False	NA	NA	False	NA	NA	NA	79543402	79552295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
87775	chr13	+	4136	3	FSM	ENSMUSG00000021578.18	ENSMUST00000022063.14	9559	3	-4	5427	-4	-339	multi-exon	FALSE	canonical	3	416	junction_2	9.5	1198	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTCTATTTTTTATGA	4346	False	NA	NA	False	NA	NA	NA	74498423	74508475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74498528_74500974_74501106_74504574
87776	chr17	+	1143	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	19	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	88	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3055	False	NA	NA	False	NA	NA	NA	35816933	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821270_35821462
87777	chrM	+	2220	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	593	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2718_3114
87779	chr1	+	1206	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	14	-4	-14	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	830	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTGTCTCAAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
87780	chr3	-	2692	4	Fusion	ENSMUSG00000010538.15_ENSMUSG00000103574.2	novel	600	2	NA	NA	0	150	multi-exon	TRUE	non_canonical	0	0	junction_1	84.2865482875068	1830	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAACAAACAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	88204203	88191763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_88193053_88193254_88194525_88202697_88202758_88204130
87781	chr9	+	5186	28	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	1276	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	563.715680994088	13	58	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	6435	False	NA	NA	False	NA	NA	NA	72577237	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628904_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
87782	chrM	-	650	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTCATTCGACTAGGGT	900	False	NA	60	True	NA	NA	NA	15288	14638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14600_15300
87783	chr13	+	7451	6	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-8922	5879	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.301958174485	1	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTCGTTTCACCTGTGTC	5623	False	NA	NA	False	NA	NA	NA	66712062	66729854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66712084_66718266_66718344_66720982_66721110_66721308_66721370_66722425_66727887_66728150
87785	chr2	-	2309	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	7	-45	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	34	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTATAACTGCGTGAATA	3743	False	NA	NA	False	NA	NA	NA	154734744	154713382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
87786	chr15	-	1822	1	Intergenic	novelGene_3336	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	684	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATAGGTCAAGAGGATGC	8528	False	NA	NA	False	NA	NA	NA	84176642	84174820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_84174800_84176600
87787	chr11	-	3025	12	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	37	1785	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5898.47077954872	9	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTTGTTGGCTACCTGG	NA	False	NA	NA	False	NA	NA	NA	33113035	33100501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102079_33102300_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87788	chr7	-	3698	23	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	-26	-4	intron_retention	FALSE	canonical	3	238	junction_22	223.990522416087	68	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAACTTAACCTGCCTAT	6998	False	NA	NA	False	NA	NA	NA	126101516	126090890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126091388_126091620_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101467
87789	chr3	-	1597	13	ISM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	341	27	224	2	3prime_fragment	FALSE	canonical	3	691	junction_7	34.4104110537623	11	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGTGTAGGGACCTGT	NA	False	NA	NA	False	NA	NA	NA	88820965	88816948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873
87790	chr8	+	4443	4	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	2739	4432	intron_retention	FALSE	non_canonical	0	0	junction_1	0	13	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTCACCCCAGACCTCTA	NA	False	NA	93	True	NA	NA	NA	73214472	73219277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73215688_73215823_73216165_73216247_73216781_73216923
87791	chrM	-	839	1	Antisense	novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	7584	False	NA	NA	False	NA	NA	NA	8604	7765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7800_8600
87792	chr11	-	2790	14	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	56	808	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	695.143423113695	187	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTGGAGCACTCCTT	5257	False	NA	NA	False	NA	NA	NA	88846235	88814037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88814504_88814562_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
87793	chr8	+	2312	4	NIC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	-64	-462	intron_retention	FALSE	canonical	3	4513	junction_1	1149.74267652472	65	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTAAACCTTTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	57964876	57968571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_57965040_57965608_57965783_57966095_57966499_57966999
87794	chr12	+	4407	23	NNC	ENSMUSG00000021111.16	novel	3022	23	NA	NA	-1	1339	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	451.408218982873	10	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTACGCCCAAACCGCA	NA	False	NA	NA	False	NA	NA	NA	105750961	105806542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023_105803329_105804768
87795	chr13	-	9795	6	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	117	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	23514002	23354443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23356266_23357799_23360382_23360465_23361361_23508978_23510238_23510644_23512271_23512391
87796	chr7	-	1178	2	FSM	ENSMUSG00000030417.16	ENSMUST00000151336.2	602	2	-601	25	210	-23	multi-exon	FALSE	canonical	3	1876	junction_1	0	8	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAACTTGTACCTCAAAC	NA	False	NA	NA	False	NA	NA	NA	35343070	35341463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_35341611_35342039
87797	chr7	+	1065	9	NNC	ENSMUSG00000031029.7	novel	2514	8	NA	NA	4	683	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	796.826822073027	917	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATCTGATGCGAGTTTA	NA	False	NA	NA	False	NA	NA	NA	108533627	108540898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_108533686_108533870_108534015_108536952_108537024_108537242_108537323_108537615_108537754_108539396_108539489_108539850_108539988_108540100_108540215_108540667
87798	chr5	+	1952	9	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	-21	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3258.00294467332	117	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTACCTGTGTGGCAT	NA	False	NA	NA	False	NA	NA	NA	108048416	108056863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049734_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762_108055956_108055992
87801	chr6	+	3472	3	FSM	ENSMUSG00000093157.3_ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	80	-2697	80	-14	multi-exon	FALSE	canonical	3	70	junction_1	333	276	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTCAAATCATTTTCT	NA	False	NA	NA	False	NA	NA	NA	125168843	125173218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125169172_125169478_125169590_125170185
87802	chr13	-	2441	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	-36	84	-36	-2	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	4962	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCATTTGCCCTTTTGAC	NA	False	NA	NA	False	NA	NA	NA	100923114	100915241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
87803	chr5	+	925	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	923	275	-5	0	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	324	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121343466	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
87804	chr10	-	1205	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1601.27180320991	4	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTCTATGAGTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	90959809	90952655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959494_90959569_90959777
87805	chr8	+	1920	2	Intergenic	novelGene_1667	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	7	junction_1	0	12	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAAAGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	73302389	73304909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_73303176_73303775
87806	chrX	+	8275	8	Intergenic	novelGene_3918	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	234	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACAGGTAGAGAGGATGAA	NA	False	NA	NA	False	NA	NA	NA	34411564	34824447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34414446_34513364_34513448_34589934_34591121_34591488_34592261_34740537_34740949_34743451_34744888_34822723_34824099_34824316
87807	chr5	+	4269	9	NNC	ENSMUSG00000038722.18	novel	867	6	NA	NA	1530	19032	intron_retention	FALSE	non_canonical	0	0	junction_1	0	247	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGGCGATCGGTCGGCGG	NA	False	NA	NA	False	NA	NA	NA	145083143	145103920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145085316_145088095_145088279_145088927_145089047_145091485_145092183_145095543_145095651_145096283_145096504_145097848_145097988_145101868_145102343_145103762
87808	chr14	-	2226	5	NIC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	6	-2367	intron_retention	FALSE	canonical	3	1848	junction_2	522.124745630774	63	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGGAATATTTTTAACCA	1694	False	NA	NA	False	NA	NA	NA	19873886	19863785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_19864674_19866252_19867216_19869974_19870075_19872633_19872759_19873736
87809	chrX	-	14696	9	Antisense	novelGene_ENSMUSG00002076729.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	501	370	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGAACGTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	29001083	28304943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_28308452_28322217_28322382_28551956_28552106_28555452_28555618_28638801_28639072_28651656_28657043_28817689_28817697_28904039_28904195_28996191
87810	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	111	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
87811	chr2	+	691	1	Antisense	novelGene_ENSMUSG00000081406.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCCGTGGCCATGCGC	NA	False	NA	NA	False	NA	NA	NA	75021366	75022057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_75021400_75022100
87812	chr13	+	3454	27	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-2	-4	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	199.905469523878	58	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCTGAGTTTTACTCAT	NA	False	NA	NA	False	NA	NA	NA	6598207	6630074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_6598312_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
87813	chr9	+	884	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-22	-64	-22	64	mono-exon	FALSE	NA	NA	NA	NA	NA	44	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACACATCCTTGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	84306014	84306898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
87814	chr18	+	5159	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	1910	at_least_one_novel_splicesite	FALSE	canonical	3	109	junction_13	342.490737576133	801	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTCTGACATTGATTT	6432	False	NA	-90	True	NA	NA	NA	77126250	77243406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240336
87815	chrM	+	634	1	FSM	ENSMUSG00000064371.1	ENSMUST00000082422.1	67	1	-499	-68	-499	68	mono-exon	FALSE	NA	NA	NA	NA	NA	265	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACATAAATTTACATAGTA	40	False	NA	19	True	NA	NA	NA	14789	15423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14800_15400
87816	chr8	+	966	3	NIC	ENSMUSG00000087687.4	novel	363	4	NA	NA	6	-37	intron_retention	FALSE	canonical	3	673	junction_2	10	41	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCCCCACCACAGAAAATA	5644	False	NA	NA	False	NA	NA	NA	3671607	3673335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3672429_3672592_3672626_3673223
87817	chr13	+	5277	5	NNC	ENSMUSG00000074867.5	novel	449	4	NA	NA	-14	7321	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	11.9032558571174	1010	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGGAACTATAGTT	NA	False	NA	NA	False	NA	NA	NA	62367355	62391279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62367452_62381070_62381198_62381382_62381444_62382774_62385621_62389132
87818	chr5	+	1942	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	98	5	28	-5	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	510	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACCTGTGTGGCATTCT	NA	False	NA	NA	False	NA	NA	NA	108048465	108056866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
87819	chr8	-	7731	20	NNC	ENSMUSG00000031821.12	novel	3900	5	NA	NA	-64	89851	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	453.678214638606	3040	66	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCCGCGTGTGTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	121315837	121215520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_121215888_121280319_121280540_121289362_121289562_121293103_121293278_121293663_121293862_121294499_121294692_121294897_121295223_121295788_121296114_121297453_121298081_121299043_121299154_121299372_121299644_121300907_121301017_121301671_121302043_121303012_121303292_121304707_121304813_121305206_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
87820	chr11	-	1530	10	NIC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	133	0	intron_retention	FALSE	canonical	3	16927	junction_7	1937.68065505843	39	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33112939	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110922_33111105_33111226_33111547_33111628_33112921
87821	chr5	+	2457	8	NNC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	17	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	684.091353250307	3363	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGTGAAGTTAAAAATG	8995	False	NA	NA	False	NA	NA	NA	124045254	124066875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124045430_124046162_124046278_124046446_124046606_124055243_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
87822	chr1	-	2328	5	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	77	-1526	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1065.36645690579	30318	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	13708558	13695079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695259_13695314_13697129_13697579_13697662_13700288_13700438_13708454
87824	chr8	+	3421	23	Fusion	ENSMUSG00000031629.15_ENSMUSG00000110270.2	novel	473	4	NA	NA	-383	11229	multi-exon	FALSE	non_canonical	0	0	junction_10	138.859522331559	3	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTTGAAACCCGCGCGA	NA	False	NA	NA	False	NA	NA	NA	47014379	47070227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_47014661_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289_47032201_47034471_47034518_47034600_47034685_47039376_47039486_47039640_47039732_47043249_47043337_47045625_47045790_47052752_47052902_47058119_47058249_47060837_47060937_47063474_47063665_47065407_47065481_47066757_47066893_47070168
87825	chr4	-	6686	6	Antisense	novelGene_ENSMUSG00000028676.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1347	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGGCGTGCGCGCGCC	NA	False	NA	NA	False	NA	NA	NA	135597012	135583315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_135583601_135585613_135585721_135589084_135589189_135590350_135590514_135590833_135590886_135591037
87826	chr1	-	2117	12	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	1946	5775	1515	1	3prime_fragment	FALSE	canonical	3	5903	junction_8	870.888621888894	14	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTTAATACTTCCTA	NA	False	NA	NA	False	NA	NA	NA	86285176	86278215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678
87827	chr17	-	1959	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	23	6	23	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	42	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	90217854	90215895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_90215900_90217900
87828	chr7	-	1017	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	5	0	-5	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	98	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
87829	chr17	+	2051	1	Intergenic	novelGene_209	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	146	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGGAGCTGTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
87830	chr9	-	3829	12	NNC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	-5622	-93	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	218.938913703993	60757	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATGTTTTATAA	NA	False	NA	NA	False	NA	NA	NA	75454611	75405081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75451951_75452036_75452132_75452229_75454378
87831	chr17	+	3491	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	89	6	10	-6	multi-exon	FALSE	canonical	3	1413	junction_6	319.856779473251	291	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCAGTGGTGGCGCACGT	509	False	NA	NA	False	NA	NA	NA	56610409	56630480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
87832	chr9	+	2167	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	-37	207	-37	-207	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	916	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACGAGCCAAGAATTTCT	9520	False	NA	NA	False	NA	NA	NA	106158222	106227513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
87833	chr5	+	1038	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	958	-21	-3	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	158	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTTTTTCTGTGTTAAG	NA	False	NA	NA	False	NA	NA	NA	108048416	108055913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
87834	chr11	-	1736	9	NNC	ENSMUSG00000042709.16	novel	949	8	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	138.327284004277	1088	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATCTTTGGTCTAAGC	NA	False	NA	NA	False	NA	NA	NA	60307860	60291455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307576_60307625_60307701
87835	chr4	+	3228	4	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	46	-2	intron_retention	FALSE	canonical	3	18	junction_1	181.800867862493	1219	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGTTTACTTAATGTCC	NA	False	NA	NA	False	NA	NA	NA	98615075	98626715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615239_98615631_98615708_98621359_98622316_98624682
87836	chr6	+	4225	1	Antisense	novelGene_ENSMUSG00000030042.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	51	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAATAAATTTTGGGACC	NA	False	NA	NA	False	NA	NA	NA	82678367	82682592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_82678400_82682600
87837	chrM	+	668	2	Genic_Genomic	ENSMUSG00000064341.1	novel	957	1	NA	NA	5	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	3	True	NA	114	True	NA	NA	NA	2755	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2765_3051
87838	chr16	-	2063	9	NNC	ENSMUSG00000033809.16	novel	1451	9	NA	NA	334	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	107.475578621378	765	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	NA	False	NA	NA	NA	20430151	20424221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20424468_20424611_20424755_20425273_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429292
87839	chr13	+	9740	23	NNC	ENSMUSG00000048924.15	novel	2413	12	NA	NA	48	33693	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	6.85098171163981	2458	68	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGACGCACACGACCTAC	NA	False	NA	NA	False	NA	NA	NA	100806328	100867441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_100806360_100814411_100814711_100815824_100815884_100818288_100818376_100819274_100819353_100820793_100820880_100823616_100823700_100826826_100826928_100828802_100828911_100830044_100830217_100830877_100831009_100832618_100840014_100840897_100841046_100842871_100843024_100846580_100846667_100848002_100848105_100853008_100853130_100854080_100854189_100855807_100855879_100857093_100857161_100859186_100859222_100866965_100867026_100867281
87840	chr1	-	2162	7	ISM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	1687	-32	1687	32	3prime_fragment	FALSE	canonical	3	343	junction_5	37.0135110466435	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTTCCTCTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	13195700	13183648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389
87841	chr12	+	2094	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	42	57	42	-57	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	5	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
87842	chr4	+	3638	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	-273	0	-248	0	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	582	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	21727452	21750546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
87843	chrM	+	846	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	114	-3	114	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	6	False	NA	-38	True	NA	NA	NA	2864	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2900_3700
87845	chr4	-	4272	6	ISM	ENSMUSG00000028809.17	ENSMUST00000084846.12	3740	18	21933	0	922	0	intron_retention	FALSE	canonical	3	663	junction_5	214.85567248737	11	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACATTGCCACTCACAT	NA	False	NA	NA	False	NA	NA	NA	135058622	135047801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314
87846	chrX	-	3138	8	Antisense	novelGene_ENSMUSG00000067194.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCAAATGGCGTCGCGG	NA	False	NA	NA	False	NA	NA	NA	158170999	158155214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158155409_158159373_158159459_158160452_158160557_158161532_158161584_158162723_158162807_158165682_158165776_158168403_158170538_158170605
87848	chr11	-	1119	10	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	1585	223	1451	0	3prime_fragment	FALSE	canonical	3	16927	junction_8	1793.60603736828	263278	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111621	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547
87849	chr1	+	1229	8	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	1	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1625.79109785899	1195	21	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAAAAAAATACATCACAG	NA	False	NA	NA	False	NA	NA	NA	63216290	63219633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216881_63217036_63217186_63217424_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218808_63219466
87850	chr14	-	3806	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	-41	-1364	-41	1364	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	868	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATTCTTAAATCCAT	NA	False	NA	NA	False	NA	NA	NA	14389447	14376574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
87851	chr4	+	1865	12	NNC	ENSMUSG00000063524.14	novel	1902	8	NA	NA	128	-78	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	4912.18996456101	2	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTCTAGGGTGCCCACC	NA	False	NA	NA	False	NA	NA	NA	150322284	150333252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150322596_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
87852	chr7	+	3776	9	NNC	ENSMUSG00000072244.12	novel	1506	8	NA	NA	-223	-248	intron_retention	FALSE	canonical	0	0	junction_8	276.31221018985	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868412	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868745_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
87853	chr17	+	1627	5	FSM	ENSMUSG00000046711.17	ENSMUST00000232265.2	1681	5	49	5	8	0	multi-exon	FALSE	canonical	3	3635	junction_2	873.596123789477	18612	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTCTCTGGTGTAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	27775596	27782643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781411
87854	chr4	-	2389	11	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	6	-11	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	482.38272149819	18	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137523689	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482940_137483061_137485882_137486044_137523552
87855	chr1	-	739	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-66	5	-66	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	309	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATAATGACCCACCAAA	NA	False	NA	NA	False	NA	NA	NA	24653798	24653059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653800
87856	chr10	+	946	7	NIC	ENSMUSG00000061315.15	novel	885	8	NA	NA	-4	0	intron_retention	FALSE	canonical	3	9741	junction_1	898.053589715001	2	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4968	False	NA	NA	False	NA	NA	NA	127871499	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127884237_127884361
87857	chrM	-	2074	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	255	-1810	255	1810	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTGGATTTGCA	8	True	NA	NA	False	NA	NA	NA	13815	11741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11700_13800
87858	chr1	-	3663	14	FSM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	21	3956	21	-3467	multi-exon	FALSE	canonical	2	3444	junction_4	860.763298254115	1911	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGTTTGGGATTCTCGC	NA	False	NA	NA	False	NA	NA	NA	178165341	178155863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
87859	chr1	+	4259	22	NNC	ENSMUSG00000026288.15	novel	4880	27	NA	NA	83	0	intron_retention	FALSE	canonical	3	20	junction_1	111.669357262742	1392	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCTCCTGACTGTGTG	9453	False	NA	NA	False	NA	NA	NA	87604043	87648225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_87604309_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
87860	chr18	-	3755	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	667.916475552337	1	136	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTTTGGGCCATGTTAT	NA	False	NA	NA	False	NA	NA	NA	42395194	42335416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343196_42344223_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369643_42369726_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384433_42390214_42390260_42395025
87861	chr8	-	5818	7	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.49071198499986	2016	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGAGAAAGGTCCA	NA	False	NA	NA	False	NA	NA	NA	20046764	19998774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_19998969_20016134_20016379_20030548_20030923_20035859_20036158_20039781_20039902_20041809_20045769_20046135
87862	chr2	+	1486	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-2	93	intron_retention	FALSE	canonical	3	37	junction_3	8.65383665716478	273	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	NA	False	NA	NA	NA	104389526	104399270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389595_104390068_104390321_104397520_104397622_104398205
87863	chr8	+	2952	10	NNC	ENSMUSG00000033751.6	novel	2494	2	NA	NA	791	5163	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	231.302484868133	5917	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCGCGCCAAGCACTTCC	3465	False	NA	NA	False	NA	NA	NA	85558941	85567274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85559270_85560736_85562306_85562384_85562551_85564090_85564226_85564322_85564396_85564634_85564766_85564903_85564958_85565097_85565282_85565424_85565583_85567120
87864	chr5	+	5983	18	Fusion	ENSMUSG00000037313.17_ENSMUSG00000106834.2	novel	2899	16	NA	NA	1119	320	multi-exon	TRUE	non_canonical	0	0	junction_1	407.054913276017	1766	32	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAACAGGGCCCAGAATA	NA	False	NA	NA	False	NA	NA	NA	33810563	33829865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_33811958_33812055_33812216_33812665_33813141_33814614_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
87865	chr2	+	3646	1	FSM	ENSMUSG00000094336.2	ENSMUST00000178960.2	2493	1	-182	-971	-182	971	mono-exon	FALSE	NA	NA	NA	NA	NA	689	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCAGTCTGTGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	83791664	83795310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_83791700_83795300
87866	chr1	+	1379	4	NIC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-15	intron_retention	FALSE	canonical	3	19621	junction_2	1900.58680996744	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454447	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_86454673_86456894_86456967_86457177_86457527_86457686
87868	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	364	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
87869	chrM	+	431	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	501	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	261	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-4	True	NA	29	True	NA	NA	NA	14645	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14655_14866
87870	chr3	-	2319	10	NNC	ENSMUSG00000005625.16	novel	1276	10	NA	NA	1	1031	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	683.423246117173	15541	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTCTTGGACATTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	94949858	94938973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943901_94944057_94949818
87871	chr1	+	12737	8	Intergenic	novelGene_363	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	36664	121	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	46482195	46627128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_46483793_46489271_46489289_46508316_46510921_46535023_46537133_46589202_46590021_46615773_46615844_46616957_46618076_46622724
87872	chr3	-	1519	1	Antisense	novelGene_ENSMUSG00000069014.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACATTTCTTAAGGTGC	NA	False	NA	NA	False	NA	NA	NA	54390354	54388835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_54388800_54390400
87873	chr19	-	7369	20	NNC	ENSMUSG00000007338.11	novel	1764	4	NA	NA	-29	10275	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	334.036116945193	2184	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCGAATAAAGCCTCAGGT	10007	False	NA	NA	False	NA	NA	NA	6107844	6093376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6093960_6094986_6097156_6097943_6098096_6098304_6098396_6098482_6098638_6098724_6098772_6099177_6099282_6099798_6099925_6100018_6100120_6100197_6100264_6100351_6100470_6100549_6100716_6100970_6101097_6101181_6101340_6101421_6101611_6102359_6102507_6102573_6105013_6105105_6105231_6106958_6107110_6107688
87875	chr1	+	5865	11	NNC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	-30308	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2.1	300	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTTTGTCTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	155880840	155929485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155898045_155898126_155898893_155898934_155906132_155906180_155907159_155907223_155909474_155909547_155911503_155911838_155927039
87876	chr7	+	1372	2	Antisense	novelGene_ENSMUSG00000040435.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTTCCTTTTTCTTCCG	63	False	NA	NA	False	NA	NA	NA	45172361	45174149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_45172745_45173160
87877	chr1	+	766	3	FSM	ENSMUSG00000046330.11	ENSMUST00000212432.2	665	3	-24	-77	0	56	multi-exon	FALSE	canonical	2	15690	junction_1	1470.5	688	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTATTTTCGAAAGATG	NA	False	NA	NA	False	NA	NA	NA	72750448	72752832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_72750960_72751300_72751384_72752660
87878	chr4	+	2648	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-2063	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	299.080674735095	1335	81	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTATATTTAATTCAAATG	1855	False	NA	NA	False	NA	NA	NA	146516840	146552686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146533486_146533556_146547961_146548020_146548860_146548988_146550437
87879	chr7	+	2668	3	Antisense	novelGene_ENSMUSG00000109038.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGTGAGCACATTTCA	NA	False	NA	NA	False	NA	NA	NA	89611633	89614496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_89612510_89612556_89614238_89614385
87880	chr17	+	1339	1	Intergenic	novelGene_176	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCGCCGCGCGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155200
87882	chrM	-	1010	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGGCTCTGCCACC	9986	False	NA	-1	True	NA	NA	NA	3710	2700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
87883	chr6	-	3298	5	NNC	ENSMUSG00000087341.5	novel	1734	7	NA	NA	-5988	-50108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	779	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCTGCCGGGGAGGGAA	NA	False	NA	NA	False	NA	NA	NA	108643883	108637401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_108637953_108638120_108638190_108638463_108638574_108639481_108639603_108641436
87884	chr17	-	2151	5	FSM	ENSMUSG00000036438.15	ENSMUST00000150137.2	657	5	-14	-1480	-7	-2	multi-exon	FALSE	canonical	3	7049	junction_1	180.22954114129	18	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGTTGCTCTGAATCTGA	NA	False	NA	NA	False	NA	NA	NA	87754291	87740841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
87885	chr7	+	780	6	NNC	ENSMUSG00000019738.16	novel	819	6	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	484.853957393358	2	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTAGTGTTTCCCGTGT	NA	False	NA	NA	False	NA	NA	NA	29931362	29932808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29931788_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
87886	SIRV1	-	1966	8	NNC	SIRV1A	novel	1561	6	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2576.50791988391	25575	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	11606	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6440_6622_6814_7552_7815_10282_10367_10444_10792_10897_11194_11406
87887	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
87888	chr17	-	3797	14	NIC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	20	-2	combination_of_known_junctions	FALSE	canonical	1	24	junction_13	157.408600322922	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACATTTGTGTTCATTAA	NA	False	NA	NA	False	NA	NA	NA	32540051	32522649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32539880
87889	chr4	+	3685	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	4919.39086130397	75	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGTGTGCTGGGCATCT	NA	False	NA	NA	False	NA	NA	NA	150321696	150333328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150323752_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
87890	chr4	-	9074	4	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3502	137	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGCTAGAAAAGGTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	42231661	41877123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41880988_42207622_42207630_42226364_42231135_42231228
87891	chr6	+	2539	7	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	1	300	intron_retention	FALSE	non_canonical	0	0	junction_3	2366.89645011258	13	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTATTAACCTTTGGC	5878	False	NA	NA	False	NA	NA	NA	67244000	67261595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244394_67248181_67248333_67248870_67249012_67249129_67249923_67254744_67254923_67258631_67258806_67260886
87892	chr16	+	564	1	Intergenic	novelGene_3734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	40	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
87893	chr19	+	368	2	ISM	ENSMUSG00000024661.8	ENSMUST00000237316.2	2062	3	1927	-1	484	0	3prime_fragment	FALSE	canonical	3	5734	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	6854	False	NA	NA	False	NA	NA	NA	9961994	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_9962050_9962144
87894	chr10	-	4238	10	NNC	ENSMUSG00000025353.6	novel	1573	4	NA	NA	-18	12306	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	297.496882440352	39	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCTCCGCCTCCCGCTCAC	NA	False	NA	NA	False	NA	NA	NA	128657493	128641464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128641582_128642034_128643489_128649905_128650014_128650434_128650553_128652578_128652739_128652823_128652928_128653067_128654885_128655822_128655975_128656258_128656384_128657410
87895	chr1	-	1113	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGGCGGTGGGCGGCGAA	9060	False	NA	NA	False	NA	NA	NA	86458419	86454534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456965_86457177_86457279_86457457_86457527_86457684
87896	chr11	+	779	6	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	-3	-15	at_least_one_novel_splicesite	FALSE	canonical	1	275	junction_2	6200.38891038296	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97917779	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97917817_97918648_97918756_97919098_97919295_97920220_97920342_97920600_97920712_97921096
87897	chr12	+	4532	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	-15	-137	-15	0	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	908	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATAGTTGGCTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	105750937	105805203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
87898	chr5	+	3460	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	118	2669	-13	2133	multi-exon	FALSE	canonical	3	347	junction_1	43.3504937240909	1402	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGATGCTTTTGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	67418025	67446135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
87899	chr3	-	3567	11	NNC	ENSMUSG00000068739.14	novel	3570	11	NA	NA	-18	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	824.492722830226	12799	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTAAGGGTTGCAGCAT	NA	False	NA	NA	False	NA	NA	NA	108352543	108332216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341360_108341524_108343201_108343283_108344824_108344896_108352312
87901	chr1	+	701	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTTATGGTTGTTAGTG	NA	False	NA	NA	False	NA	NA	NA	24653051	24653752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24653100_24653800
87902	chr8	-	444	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-6	11	-6	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	25	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	108166217	108165773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
87903	chrM	+	885	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	259	0	259	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	107	False	NA	136	True	NA	NA	NA	14403	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
87904	chr11	+	4220	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	9	-221	intron_retention	FALSE	canonical	3	2354	junction_11	199.955407355129	742	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332191	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
87905	chr17	-	2573	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	75	1	-14	-1	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	30	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTGAGGCTGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	36149123	36144813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
87906	chr15	-	3226	5	NNC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-17	-500	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.820535611075	1591	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACCCCAAACTTGACATGA	NA	False	NA	NA	False	NA	NA	NA	97065142	97055409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97055557_97056534_97059277_97059835_97059964_97064383_97064508_97065057
87907	chrM	+	1136	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	8	0	8	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	6	True	NA	95	True	NA	NA	NA	14152	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
87908	chr12	-	1363	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	364	1	308	-1	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	138	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	111638408	111635795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
87909	chr16	-	2504	23	NNC	ENSMUSG00000022685.10	novel	534	8	NA	NA	-6	-22135	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	87.8616610792404	98	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATCGTTTTTTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	13486019	13380556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13381307_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
87910	chr7	+	2294	4	FSM	ENSMUSG00000030604.10	ENSMUST00000205671.2	5329	4	-10	3045	-10	1202	multi-exon	FALSE	canonical	2	4	junction_3	14.7648230602334	16	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAATATAAAGAATAAGGAA	7287	False	NA	NA	False	NA	NA	NA	27506610	27519296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27506662_27507625_27507753_27510175_27510275_27517279
87911	chr11	-	2618	19	FSM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	42	1958	-4	1108	multi-exon	FALSE	canonical	3	1487	junction_13	205.703280251368	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTGGAACCCCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	53191242	53152598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
87913	chr17	-	2837	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	187	3	-9	-3	multi-exon	FALSE	canonical	3	561	junction_9	75.0022221893014	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2371	False	NA	NA	False	NA	NA	NA	45744476	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
87914	chrX	-	1455	4	Antisense	novelGene_ENSMUSG00000031432.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTCCCGCCCAGCGCGCG	NA	False	NA	NA	False	NA	NA	NA	139370516	139357373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_139357612_139365978_139366162_139368418_139368517_139369580
87915	chrM	-	695	1	Antisense	novelGene_ENSMUSG00000064359.1_AS_novelGene_ENSMUSG00000064358.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGATGTTAGAAGGAGGG	6797	False	NA	NA	False	NA	NA	NA	9391	8696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_8700_9400
87916	chr8	+	2133	6	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	-11	-54	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	320.893377931051	2991	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGACCTTTGTAGTCCT	NA	False	NA	NA	False	NA	NA	NA	107783521	107787509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008_107786110_107786945
87917	chr5	-	4321	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	-294	525	-294	-9	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAGAAAGTATTTAGAAC	NA	False	NA	NA	False	NA	NA	NA	31337782	31313873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
87918	chr11	-	1249	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	24	594	24	-589	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	26	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCGTCTGCCATCCCCAT	NA	False	NA	NA	False	NA	NA	NA	120472426	120469523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
87919	chr2	+	2153	10	NNC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	0	376	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	3663.85558909979	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCCCTGACTGGCTGGC	7475	False	NA	NA	False	NA	NA	NA	75489604	75496841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493074_75493965_75494059_75495371_75495495_75495577_75495646_75495741
87920	chr5	+	897	7	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6359.98192913226	6	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345217_121346453_121346639_121346844
87921	chr3	+	2109	6	NIC	ENSMUSG00000028140.14	novel	1612	7	NA	NA	11	-2	intron_retention	FALSE	canonical	3	188	junction_4	26.9770272639518	14563	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAGAAAAAGAACT	8513	False	NA	NA	False	NA	NA	NA	94350654	94356013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354651_94355092
87922	chr4	-	3734	7	NNC	ENSMUSG00000028639.15	novel	1628	8	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	3875.61998266084	4936	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATAATGTCTAGTTT	NA	False	NA	NA	False	NA	NA	NA	119151697	119135187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119138850_119139342_119139646_119139977_119140068_119142305_119142340_119150938_119151003_119151550
87923	chr1	-	5300	24	ISM	ENSMUSG00000026193.16	ENSMUST00000190780.7	7694	44	5	28514	5	-9941	5prime_fragment	FALSE	canonical	3	1514	junction_15	111.259535816122	41	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGCCCCAGCTCACTG	NA	False	NA	NA	False	NA	NA	NA	71692326	71653196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
87924	chr9	+	3613	8	NIC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	49	1800	combination_of_known_splicesites	FALSE	canonical	1	6	junction_1	66.6865956607197	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAAGCCCTCTGCAGTTG	NA	False	NA	NA	False	NA	NA	NA	108174169	108181301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108174225_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
87926	chr4	-	2575	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	33	-1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	595.596479729915	673	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCTGAGTCTTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	137523662	137469044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137494871_137494959_137523552
87927	chr4	+	5387	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	58	42994	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	84.2368090563739	59	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	146206999	146257998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
87928	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
87929	chr5	-	7847	16	Genic_Genomic	ENSMUSG00000104535.2	novel	4108	1	NA	NA	-12750	24413	multi-exon	FALSE	non_canonical	0	0	junction_1	0	215	28	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACTTTCTCCCTACCTTT	NA	False	NA	NA	False	NA	NA	NA	8798518	8757247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_8760996_8761124_8762150_8763189_8763347_8764884_8765061_8765737_8765891_8768979_8769083_8769986_8770067_8773156_8773242_8776771_8776975_8782289_8782390_8783595_8783740_8787614_8787771_8788693_8788892_8790407_8790614_8796506_8796654_8797352
87930	chr8	+	1994	1	FSM	ENSMUSG00000099881.2	ENSMUST00000186531.2	2137	1	134	9	134	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	188	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAATACTCATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	123769338	123771332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123769300_123771300
87931	chr6	+	3235	6	NNC	ENSMUSG00000030103.12	novel	3113	5	NA	NA	-686	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	98.0375438288822	777	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTAAATGCTGGATTTGT	NA	False	NA	NA	False	NA	NA	NA	108636903	108643883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_108636970_108637530_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
87932	chr5	+	2127	5	ISM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	27	-1	27	1	intron_retention	FALSE	canonical	3	107	junction_1	326.192715277334	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACATTCTTTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	145077251	145084882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252
87933	chr5	+	1624	1	Antisense	novelGene_ENSMUSG00000040731.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTAAGCTCATTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	134648729	134650353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_134648700_134650400
87934	chr19	-	4316	12	Antisense	novelGene_ENSMUSG00000098363.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	200	53	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTCTGCTCAGACTCCTC	9224	False	NA	NA	False	NA	NA	NA	10174238	10160897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10162136_10162294_10162400_10163046_10163245_10163739_10163838_10164112_10164246_10168801_10168865_10170275_10170355_10171067_10171161_10171357_10171452_10171676_10171762_10171852_10171979_10172234
87935	chr6	-	2253	10	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	49	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1631.25176505273	46	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	NA	False	NA	NA	NA	144994489	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144985262_144985362_144993017_144993090_144994288
87936	chr19	-	2611	4	NNC	ENSMUSG00000084957.4	novel	2043	4	NA	NA	-22	490	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	84.6889734394167	494	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	53933080	53917801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_53919934_53920560_53920693_53931896_53932011_53932847
87937	chr11	-	1821	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	46	0	46	0	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	NA	False	NA	NA	NA	120472404	120468929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
87938	chr11	+	4909	25	FSM	ENSMUSG00000020290.15	ENSMUST00000102869.8	6004	25	-136	1231	-99	-579	multi-exon	FALSE	canonical	2	1142	junction_7	252.998761388053	1609	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCACTGACTTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	23205941	23247018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
87939	chr3	+	4227	3	ISM	ENSMUSG00000025764.15	ENSMUST00000168086.7	4790	11	39765	-746	2189	0	3prime_fragment	FALSE	canonical	3	776	junction_1	7.5	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTGTCTGTTGAAAT	3319	False	NA	NA	False	NA	NA	NA	41559053	41571293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_41559427_41564237_41564356_41567557
87941	chr6	+	2130	3	NNC	ENSMUSG00000040370.14	novel	2436	3	NA	NA	4	-6	intron_retention	FALSE	canonical	2	2	junction_1	159.5	19	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAGTCTTAAAGGAGTC	NA	False	NA	NA	False	NA	NA	NA	145156929	145162259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145157127_145160247_145160998_145161076
87942	chr6	+	2795	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	23	0	-9	0	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	1135	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	NA	False	NA	NA	NA	142332969	142349584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
87943	chr11	-	1234	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	6180.4734001531	201918	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113047	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110350_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
87944	chr5	-	2306	14	NNC	ENSMUSG00000029446.15	novel	1733	8	NA	NA	-10685	-7573	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	76	9	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTTTTTTTTTCCTT	3868	False	NA	NA	False	NA	NA	NA	129875198	129864017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_129864324_129865296_129865360_129866114_129866252_129866880_129867053_129867645_129867750_129868530_129868644_129868845_129869004_129869080_129869164_129870696_129870793_129871410_129871562_129872178_129872314_129873808_129873911_129874420_129874494_129874585
87945	chr11	-	1105	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1459	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	6328.50538788144	1989	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111613	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111216_33111543
87946	chr5	-	2403	15	NNC	ENSMUSG00000036980.14	novel	2619	15	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_14	167.30713843536	1063	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGAGCCTCCCGCATC	1957	False	NA	NA	False	NA	NA	NA	138185483	138176881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185324
87948	chr17	-	1839	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	635	1749	mono-exon	FALSE	NA	NA	NA	NA	NA	27	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGAGCGCGAGCGAAGCC	NA	False	NA	NA	False	NA	NA	NA	40159083	40157244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157200_40159100
87949	chr5	-	4524	19	NIC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	19	-13	combination_of_known_junctions	FALSE	canonical	3	21	junction_18	147.57426462716	9	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCATTGCAGAGGAGC	NA	False	NA	NA	False	NA	NA	NA	31337234	31313361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31336988
87950	chr11	+	572	1	FSM	ENSMUSG00000056895.5	ENSMUST00000078267.5	614	1	42	0	42	0	mono-exon	FALSE	NA	NA	NA	NA	NA	953	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGCGTAGTTTAATAGAT	NA	False	NA	NA	False	NA	NA	NA	58839787	58840359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_58839800_58840400
87951	chr12	-	668	5	FSM	ENSMUSG00000091803.8	ENSMUST00000166723.8	579	5	53	-142	53	0	multi-exon	FALSE	canonical	1	1	junction_1	163.084908866517	20	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	1088	False	NA	NA	False	NA	NA	NA	81531794	81405799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_81406119_81421191_81421282_81521360_81521424_81527704_81527777_81531670
87952	chr7	+	1508	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	466	-1	1	0	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46497020	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
87953	chr11	+	2890	10	FSM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	-31	-312	-31	312	multi-exon	FALSE	canonical	3	289	junction_3	21.1502561056204	3	133	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCAAGTGCTCTTAACA	NA	False	NA	NA	False	NA	NA	NA	102139676	102156325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
87954	chr15	-	3154	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	77	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1840.34552915116	5	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	36794698	36771019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776619_36790976_36791233_36793722_36793920_36794388
87955	chr17	-	1708	6	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-14	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4550.7622482393	74	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGGGAATTGGAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	36149123	36144830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36144886_36145458_36146369_36146643_36146932_36147054_36147166_36147519_36147629_36148888
87956	chr7	+	1417	7	NNC	ENSMUSG00000070837.7	novel	1320	7	NA	NA	21	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	173.969984639752	691	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTCTTGCTTGAGTGAG	2817	False	NA	NA	False	NA	NA	NA	6998404	7006088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_6998834_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005533_7005791
87957	chr11	-	3874	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	-1	4	-1	-4	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	833	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTCATTGAGAATGTTAA	NA	False	NA	NA	False	NA	NA	NA	79853217	79824782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
87958	chr9	+	6170	8	NNC	ENSMUSG00000031939.17	novel	4881	8	NA	NA	255	-1	intron_retention	TRUE	non_canonical	0	0	junction_1	255.753149480877	580	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTTATAGTTTGTAT	9442	False	NA	NA	False	NA	NA	NA	15217879	15228271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217934_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15227228_15227391
87959	chr19	-	5128	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22705271	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22704731_22704824
87960	SIRV1	-	1922	8	NNC	SIRV1A	novel	1561	6	NA	NA	37	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2493.40395149004	36125	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAATCGATGCATACTT	NA	False	NA	NA	False	NA	NA	NA	11606	1004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1398_6386_6474_6560_6814_7552_7815_10282_10367_10444_10792_10897_11194_11406
87961	chr4	-	2766	2	ISM	ENSMUSG00000051557.16	ENSMUST00000142724.8	883	4	11	-1627	11	-5	intron_retention	FALSE	canonical	3	387	junction_1	0	2	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAACAAAAAGGTCTGTTTA	9146	False	NA	NA	False	NA	NA	NA	155976172	155973323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_155975127_155975209
87962	chr14	-	1747	9	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	411	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCGGGTGGAAGGAAGGC	NA	False	NA	NA	False	NA	NA	NA	63380584	63370868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63370913_63371410_63371498_63373054_63373170_63373853_63373974_63375480_63375566_63375797_63375942_63376445_63376561_63379178_63379311_63379679
87963	chr9	-	1029	7	Antisense	novelGene_ENSMUSG00000064925.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62422	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGCGGCCGGAAATGAC	NA	False	NA	NA	False	NA	NA	NA	119960625	119956853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_119956896_119957521_119957688_119958222_119958341_119959181_119959428_119959831_119959960_119960062_119960230_119960463
87964	chr17	+	2046	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-295	98	-295	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	10	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	NA	False	NA	NA	NA	40156948	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40156900_40159000
87965	chr9	+	980	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	88	4	88	-4	multi-exon	FALSE	canonical	3	8868	junction_1	0	260	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTGTTTGTGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	108216340	108217538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108216758_108216975
87966	chrM	+	1973	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	431	-580	431	580	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	101	False	NA	-8	True	NA	NA	NA	12172	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12200_14100
87967	chr16	+	2063	12	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	726.283736645467	10	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926631_22927339_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
87968	chr1	-	707	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	132	-161	-132	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTAGCCCACCAACAGC	NA	False	NA	NA	False	NA	NA	NA	24653893	24653186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653200_24653900
87969	chr19	+	2872	10	NIC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-36	306	combination_of_known_junctions	FALSE	canonical	3	113	junction_2	84.0640555296898	725	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTAATAATCCCAGACTC	NA	False	NA	NA	False	NA	NA	NA	38043422	38063177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
87970	SIRV10001	+	4507	1	FSM	SIRV10001A	SIRV10001	9941	1	0	5434	0	-5434	mono-exon	FALSE	NA	NA	NA	NA	NA	788	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACCAAATTGCAACCGGA	NA	False	NA	NA	False	NA	NA	NA	0	4507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV10001_+_0_4500
87971	chr5	-	1502	7	NNC	ENSMUSG00000000568.16	novel	6811	9	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1793.44721602468	84	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTTAAGGAAATCTATTA	NA	False	NA	NA	False	NA	NA	NA	100126797	100108462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115117_100126556
87972	SIRV6	+	1081	7	NNC	SIRV6A	novel	1435	9	NA	NA	7	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9697.90105154489	1	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGGGAGTATACTTA	NA	False	NA	NA	False	NA	NA	NA	1007	11827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1069_2533_2625_2750_2829_3106_3165_10724_10819_11031_11109_11205
87973	chr3	-	3705	26	NIC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	-33	1	combination_of_known_junctions	FALSE	canonical	0	0	junction_25	254.474284751918	134	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTATGCTTTTATGTCT	3361	False	NA	NA	False	NA	NA	NA	89959968	89913299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959890
87974	chr17	+	979	1	Intergenic	novelGene_168	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCGCCCCCTGACCGCCTC	NA	False	NA	NA	False	NA	NA	NA	40153887	40154866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40154900
87975	chr7	-	3090	14	NNC	ENSMUSG00000038930.12	novel	3336	9	NA	NA	2949	-1074	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	970	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGCGTGCGGGCCTCAA	NA	False	NA	85	True	NA	NA	NA	79966002	79944050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_79944338_79950046_79950180_79950782_79950910_79954109_79954339_79954424_79954598_79955663_79955815_79956121_79956268_79957303_79957442_79959138_79959232_79960485_79960634_79960815_79960935_79961970_79962074_79962777_79962878_79964859
87976	chr11	-	2236	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	14	0	3	0	multi-exon	FALSE	canonical	3	110	junction_3	12.8	38173	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTCCTACAGAATGAGT	6315	False	NA	NA	False	NA	NA	NA	45846307	45837669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
87977	chr9	-	6732	12	FSM	ENSMUSG00000032423.13	ENSMUST00000069221.12	9450	12	-20	2738	-5	-16	multi-exon	FALSE	canonical	3	723	junction_1	80.8280493004688	996	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCATGTCTTAGGATCTC	NA	False	NA	NA	False	NA	NA	NA	88364632	88331799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
87978	chr17	+	2835	6	NNC	ENSMUSG00000037089.12	novel	1906	4	NA	NA	10	1427	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	206.701330426294	77	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGGCCACTTGCTCTTT	NA	False	NA	NA	False	NA	NA	NA	45874899	45880024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234_45879050_45879153_45879491_45879785
87979	chr13	+	3275	1	Intergenic	novelGene_1486	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATATGCACATATGTGCAA	NA	False	NA	NA	False	NA	NA	NA	80850997	80854272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_80851000_80854300
87980	SIRV3	-	3120	7	Fusion	SIRV3B_SIRV3C	novel	796	3	NA	NA	0	-943	intron_retention	FALSE	non_canonical	0	0	junction_1	664.744562469926	2171	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCAAGCGCACATAAATTC	NA	False	NA	NA	False	NA	NA	NA	9943	1943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_SIRV3_-_2005_4567_4784_6061_7993_8133_8208_8755_8976_9189_9299_9434
87981	chr4	-	2394	12	Fusion	ENSMUSG00000085241.8_ENSMUSG00000028896.14	novel	2278	11	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_11	183.555022489148	561	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	NA	False	NA	NA	False	NA	NA	NA	132080944	132059233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132075310_132075446_132080903
87982	chr5	+	1739	10	Genic_Genomic	ENSMUSG00000091623.3	novel	2011	2	NA	NA	-17082	-728	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1209	8	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCGACGGAAGAACGGCG	NA	False	NA	NA	False	NA	NA	NA	100108462	100126794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_100109191_100110371_100110472_100111589_100111736_100111841_100111943_100112528_100112659_100113878_100114041_100115075_100115249_100124393_100124450_100126250_100126304_100126704
87983	chr9	-	2416	5	NIC	ENSMUSG00000032494.13	novel	1932	6	NA	NA	13	-10	intron_retention	FALSE	canonical	3	4243	junction_3	259.190446390294	5	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAACAAAATGTGAGTAGT	NA	False	NA	NA	False	NA	NA	NA	110775213	110768680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_110769888_110771396_110771507_110771597_110772322_110773258_110773312_110774891
87984	chr13	+	3461	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	19	-569	19	569	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	398	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAGCTGAGCAACGTGAC	NA	False	NA	NA	False	NA	NA	NA	14787843	14802790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
87985	chr17	+	1788	1	Intergenic	novelGene_177	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCGGTCCCTTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155700
87986	chr3	+	4144	29	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-828	30978	multi-exon	FALSE	non_canonical	0	0	junction_1	0	621	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCAACGCCGCTGCGCT	NA	False	NA	NA	False	NA	NA	NA	89907593	89959730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908299_89909124_89909176_89909585_89909784_89910551_89910623_89915565_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935689_89938620_89938678_89941372_89941482_89941957_89942006_89945674_89945773_89946154_89946324_89951006_89951118_89952160_89952238_89955075_89955207_89959611
87987	chr11	+	4035	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-5	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	556.137614624294	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332197	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334409_72334585_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
87988	chr18	+	2326	11	Antisense	novelGene_ENSMUSG00000041840.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2783	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCTCGCGGGGAACGTC	545	False	NA	NA	False	NA	NA	NA	77825935	77855476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_77825944_77843739_77844961_77845169_77845453_77846168_77846218_77847136_77847209_77848167_77848233_77848605_77848731_77849681_77849815_77851770_77851909_77854563_77854737_77855417
87989	chr7	+	3282	16	FSM	ENSMUSG00000061079.15	ENSMUST00000084727.11	3003	16	-24	-255	-24	248	multi-exon	TRUE	canonical	3	81	junction_4	55.3423285861133	439	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAATACATATAGAT	NA	False	NA	NA	False	NA	NA	NA	109660892	109694849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
87990	chr9	-	643	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	10005	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	22	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCGCGGGCGGTACAGC	9623	False	NA	NA	False	NA	NA	NA	57439710	57428564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57428698_57436237_57436354_57437521_57437644_57438949_57439075_57439563
87991	chr7	+	1295	12	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	-7	-407	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_4	1395.61737871402	366	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	137039376	137069916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060571_137060623_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
87992	chr13	+	3546	6	NIC	ENSMUSG00000063200.5	novel	1800	8	NA	NA	-6	2	intron_retention	FALSE	canonical	3	1274	junction_1	99.0220177536289	6	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGACATGTAATACTGTTA	NA	False	NA	NA	False	NA	NA	NA	43551859	43556339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_43552135_43552210_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
87993	chr6	-	3791	8	NNC	ENSMUSG00000029922.16	novel	3046	8	NA	NA	20	-6	intron_retention	TRUE	non_canonical	0	0	junction_7	1436.90968003261	19	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATTGGTCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	39397376	39374743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39382895_39387021_39387151_39397032_39397075_39397159
87994	chr3	+	3452	4	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	10596	807	10596	-807	3prime_fragment	FALSE	canonical	3	470	junction_1	22.4499443206436	922	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTGGAATTTTGAGCTC	NA	False	NA	NA	False	NA	NA	NA	104556579	104564971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104556834_104558201_104558346_104560057_104560904_104562763
87995	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
87996	chr19	+	823	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	98	8	-3	-2	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTCTTTTCTTTGTGA	4967	False	NA	NA	False	NA	NA	NA	9960107	9962454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
87997	chr18	-	8546	12	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	63	-234	intron_retention	FALSE	non_canonical	0	0	junction_11	1838.07760697317	17	90	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAAGCCTCTTGATCTCC	262	False	NA	NA	False	NA	NA	NA	35087347	35070700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35083250_35083308
87998	chr8	-	2937	10	ISM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	16255	-453	-3105	433	3prime_fragment	FALSE	canonical	3	501	junction_4	33.6554803564693	3	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTCAAGTGTGTTTATGT	NA	False	NA	NA	False	NA	NA	NA	89072567	89057233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457
87999	chr3	+	2085	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	40	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1167.56215584229	4	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAGAACCAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	89986886	90008180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987159_89993817_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
88002	chr16	-	3945	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	-20	-1755	-20	1755	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	942	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCCTGAGACTGTCCCC	NA	False	NA	NA	False	NA	NA	NA	5073867	5060260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
88004	chr19	+	1155	11	NNC	ENSMUSG00000042729.12	novel	1204	11	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	343.321365487206	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTACTGATCCTGGACCTTT	965	False	NA	NA	False	NA	NA	NA	8713192	8717980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8713270_8713350_8713458_8713539_8713611_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
88005	chrM	-	1104	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCGTATGTTTGTCA	919	False	NA	79	True	NA	NA	NA	15269	14165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14200_15300
88006	chr17	-	924	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	375	638	8	0	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2302	False	NA	NA	False	NA	NA	NA	71309174	71301288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
88007	chr3	+	649	3	Antisense	novelGene_ENSMUSG00000047676.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAAAGCTATAGCTATCAT	NA	False	NA	NA	False	NA	NA	NA	149778393	149779249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_149778534_149778579_149778869_149779029
88008	chr5	-	3290	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	56	145	3	-145	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGACACGCTGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	114046763	113980641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
88009	chrX	-	3164	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	16	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.641656782259	5	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTAATTGTGCCCATGTGT	NA	False	NA	NA	False	NA	NA	NA	93256241	93232314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93232650_93233056_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
88010	chr9	+	3067	11	Intergenic	novelGene_1096	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	610	57	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCAGTGAGGGACTGGAG	42	False	NA	NA	False	NA	NA	NA	64092381	64160871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_64094083_64094573_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101111_64111714_64111769_64112394_64112470_64119864_64120013_64121680_64121891_64160493
88011	chr5	+	3009	5	NNC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	7	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	345.02463680149	3680	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGATTCAAACTGCCTCTG	782	False	NA	NA	False	NA	NA	NA	129792588	129799606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129792614_129792747_129792975_129793790_129793931_129794979_129795815_129797824
88012	chr8	+	2690	4	ISM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	509	-2	-132	2	3prime_fragment	FALSE	canonical	3	6480	junction_3	312.16377467961	191	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGTTCTGTTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	57965449	57969035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_57965783_57966095_57966242_57966323_57966499_57966999
88013	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
88014	chr8	+	4567	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	-265	14	-265	-14	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	2490	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTCCTGACTACGG	NA	False	NA	NA	False	NA	NA	NA	107877006	107914089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
88015	chr1	+	5064	20	Genic_Genomic	ENSMUSG00000103178.2	novel	1137	1	NA	NA	-22	46826	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	54	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTTTTGCCAGATGTCC	NA	False	NA	NA	False	NA	NA	NA	180918671	180966656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_180921477_180922550_180922622_180924702_180924789_180926690_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936787_180939851_180939957_180941646_180941866_180944999_180945251_180947919_180948065_180951431_180951550_180954502_180954607_180957074_180957208_180957957_180958038_180958304_180958436_180962356_180962625_180964438_180964492_180966628
88016	chrM	-	916	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATAAAATAGGAAATAAATC	-61	True	NA	NA	False	NA	NA	NA	11539	10623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10600_11500
88017	chr9	+	1433	6	NIC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	2998	junction_3	1097.58090362397	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959963_119960065_119960232_119960465
88018	chrM	+	2611	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1029	0	1029	mono-exon	FALSE	NA	NA	NA	NA	NA	12	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAATATGTCTGATAAAA	-3	True	NA	22	True	NA	NA	NA	1093	3704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
88019	chr12	+	1513	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2510	-2	809	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	100	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	9257	False	NA	NA	False	NA	NA	NA	100165785	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
88020	chr4	-	1394	7	ISM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	62	2	7	-2	intron_retention	FALSE	canonical	3	268	junction_3	44.2254326026201	64	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9142	False	NA	NA	False	NA	NA	NA	155976176	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814
88021	chr8	+	3389	20	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	2992	-2096	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	764.496466731815	35	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGGTGATGTCATGCGCT	NA	False	NA	NA	False	NA	NA	NA	111763539	111782200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763723_111766684_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
88022	chr11	-	1202	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	6328.50538788144	707	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113054	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33112897
88023	chr1	-	1126	1	Intergenic	novelGene_494	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	120	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCCACACACACTAAACACA	NA	False	NA	NA	False	NA	NA	NA	182029583	182028457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_182028500_182029600
88024	chr3	-	2924	18	ISM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	13659	-4	12708	4	3prime_fragment	TRUE	canonical	3	1102	junction_11	84.3295151653778	314	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104711962	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793
88025	chr6	+	3727	20	NIC	ENSMUSG00000030231.12	novel	3006	23	NA	NA	0	1094	combination_of_known_junctions	FALSE	canonical	3	72	junction_4	10.7646698204585	1257	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATTTCTGAACTTTTAT	NA	False	NA	NA	False	NA	NA	NA	140369886	140530760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_140369983_140370102_140370183_140372223_140372282_140470590_140470675_140471564_140471686_140472182_140472288_140474286_140474360_140480187_140480289_140482373_140482490_140489445_140489914_140496486_140496950_140498440_140498525_140515078_140515142_140515831_140515913_140516046_140516197_140518590_140518693_140522952_140523065_140525155_140525203_140527693_140527815_140529558
88026	chr17	+	2284	3	Antisense	novelGene_ENSMUSG00000092687.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	206	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCCGCCCGCCTCGGCC	9706	False	NA	NA	False	NA	NA	NA	35168777	35171448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35170901_35171110_35171146_35171322
88027	chr10	+	3127	14	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	1049	723	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	94.4407393789241	7	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGAGTGCGACTTGCTCC	NA	False	NA	NA	False	NA	NA	NA	75401037	75422757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75401417_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
88028	chr1	+	5749	10	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-9	-4	intron_retention	TRUE	non_canonical	0	0	junction_9	172.795604653748	1529	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTGTGCTGAGGTTGGG	5651	False	NA	NA	False	NA	NA	NA	34478969	34488433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438_34487006_34487050
88029	chr13	+	2182	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	71	2050	0	1	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	72	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGGTATTGAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	3588133	3615821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
88030	chr2	+	4048	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	227	1044	227	-1044	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	926	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCATTGTCAGAGTTCTA	4319	False	NA	NA	False	NA	NA	NA	4886601	4914324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
88031	chr4	+	9664	7	NNC	ENSMUSG00000087207.9	novel	585	4	NA	NA	4	80313	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	636	106	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCCTATCTCAAAAATAAAA	4114	False	NA	NA	False	NA	NA	NA	147314744	147424108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147314763_147343218_147343964_147344161_147345314_147345768_147346087_147346582_147348419_147348591_147348941_147418862
88032	chr5	+	1024	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	351	230	195	-230	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTACTTCTCTTAAAACT	NA	False	NA	NA	False	NA	NA	NA	115697876	115701556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
88033	chr16	-	3156	7	ISM	ENSMUSG00000013089.16	ENSMUST00000168774.8	3773	13	24767	-4	-9918	-3	3prime_fragment	FALSE	canonical	3	940	junction_4	61.8456860976486	11933	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCCTGCAACCTGCCTC	NA	False	NA	NA	False	NA	NA	NA	22230497	22200061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22202442_22205506_22205609_22211404_22211575_22211736_22211806_22218069_22218130_22220421_22220682_22230382
88034	chrUn_MU069435v1	+	575	1	Intergenic	novelGene_4740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1334	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGGTTTGTCTCTGCGG	NA	False	NA	NA	False	NA	NA	NA	0	575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
88035	chr2	+	3194	2	NNC	ENSMUSG00000096484.2	novel	732	2	NA	NA	-797	579	intron_retention	FALSE	non_canonical	0	0	junction_1	0	733	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCTAATTTTCATTGTC	NA	False	NA	NA	False	NA	NA	NA	83802669	83806538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_83802704_83803378
88036	chr11	+	3498	8	NIC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	-4	intron_retention	FALSE	canonical	3	3003	junction_1	204.751716247074	417	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52278301_52279258
88037	chr5	+	1024	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	154	1199	21	-1199	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	724	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGTTTAGAATCAGAATAAA	496	False	NA	NA	False	NA	NA	NA	129097286	129100188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
88038	chr17	+	2139	1	Intergenic	novelGene_199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1704	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTTGCCCCGCGAGGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40156026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156000
88039	chr3	+	1551	1	FSM	ENSMUSG00000104616.2	ENSMUST00000196501.2	463	1	-872	-216	-872	216	mono-exon	FALSE	NA	NA	NA	NA	NA	198	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAATAACTTTACAGAGT	NA	False	NA	NA	False	NA	NA	NA	41439295	41440846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41439300_41440800
88041	chr4	-	1532	1	ISM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	2395	0	2395	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127220559	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_127219000_127220600
88042	chr15	+	2682	3	Antisense	novelGene_ENSMUSG00000047878.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	21	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGGCTGCTAGTAGAAGA	NA	False	NA	NA	False	NA	NA	NA	83110354	83123167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83112798_83114717_83114856_83123066
88043	chr14	+	2617	18	Antisense	novelGene_ENSMUSG00000037544.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCTTTCCGAAACCGACT	3817	False	NA	NA	False	NA	NA	NA	47625241	47653986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_47625581_47626868_47626916_47627899_47628119_47629177_47629235_47631591_47631775_47633211_47633432_47635874_47635971_47636979_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645373_47647768_47647836_47648901_47649025_47649115_47649203_47650436_47650495_47651099_47651296_47653791
88044	chr9	+	2184	2	ISM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	3311	-420	3259	420	intron_retention	FALSE	canonical	3	209	junction_1	0	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAGTCAACTTAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	108177379	108179921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108177914_108178271
88045	chr10	+	2619	4	NIC	ENSMUSG00000061371.8	novel	2360	4	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	17.0489491367259	12	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	81883956	81900575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_81884064_81894203_81894331_81895350_81897183_81900022
88046	chr11	+	1740	5	ISM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	19011	138	276	-138	3prime_fragment	FALSE	canonical	3	8977	junction_4	840.54312798333	103	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTGGGGGGAAGGGAGG	132	False	NA	-9	True	NA	NA	NA	75642705	75656533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
88047	chr17	+	5030	5	NIC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	0	307	intron_retention	FALSE	canonical	3	1420	junction_1	282.90225785596	152	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTTCCTAGGATACACA	NA	False	NA	NA	False	NA	NA	NA	29251646	29262654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29251761_29255214_29255423_29257463_29259788_29260180_29260268_29260357
88048	chr14	-	2949	8	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	0	212	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	98	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTGTCAAGTTAAAATG	8749	False	NA	NA	False	NA	NA	NA	52341461	52310621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
88049	chr17	-	2854	2	NNC	ENSMUSG00000118642.2	novel	714	4	NA	NA	626	5105	intron_retention	FALSE	non_canonical	0	0	junction_1	0	137	81	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTACCTTCTTAATCA	NA	False	NA	NA	False	NA	NA	NA	40159092	40153888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_40154839_40157188
88050	chr8	+	3438	8	FSM	ENSMUSG00000031467.11	ENSMUST00000149565.8	10779	8	200	7141	198	799	multi-exon	FALSE	canonical	3	636	junction_4	34.1778063804509	891	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCTGAAAATTAACTGTC	NA	False	NA	NA	False	NA	NA	NA	18896492	18934236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929745_18931753
88051	chr6	-	2503	2	FSM	ENSMUSG00000048668.17	ENSMUST00000223237.2	1081	2	-1056	-366	-1056	1	multi-exon	FALSE	canonical	3	340	junction_1	0	502	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTGTCTCAGTGGTCC	2929	False	NA	NA	False	NA	NA	NA	128337376	128333961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128335157_128336068
88052	SIRV1	-	1474	5	NNC	SIRV1A	novel	973	3	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	379.022756572742	582	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	11606	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_7552_7809_10553_10792_10897_11194_11406
88053	chr17	-	815	5	NNC	ENSMUSG00000036438.15	novel	1205	6	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3195.57181893945	32	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	NA	False	NA	NA	NA	87754291	87740839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_87741353_87743082_87743139_87743218_87743363_87750123_87750155_87754220
88054	chr4	-	2987	10	NNC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-1685	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	647.554201935594	8	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141329028	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_141303716_141303838_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141328877
88055	chr4	-	2582	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	178	8	-14	-8	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	2696	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTATTCACCTGATGT	NA	False	NA	NA	False	NA	NA	NA	122779671	122752847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
88056	chr9	-	1046	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	360	-55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6090.42473888316	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAAATCTGTCACAGAATT	8685	False	NA	NA	False	NA	NA	NA	78387421	78385785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78385981_78386319_78386475_78386559_78386817_78386905_78387057_78387133
88057	chr11	+	1192	5	ISM	ENSMUSG00000020610.18	ENSMUST00000125108.2	1846	6	206	903	-32	-903	3prime_fragment	FALSE	canonical	3	149	junction_3	13.4257215820976	87	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAATCATTAGAGCTGG	NA	False	NA	NA	False	NA	NA	NA	109317013	109320968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749
88058	chr1	-	2867	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	37	-1526	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	914.015089226285	7	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAACTGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	13730733	13695079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13721008_13721109_13730552
88059	chr6	+	3176	7	Antisense	novelGene_ENSMUSG00000029752.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCCACGCTGTCATAGA	NA	False	NA	NA	False	NA	NA	NA	7674910	7682280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_7675523_7675990_7676149_7676234_7676317_7677230_7677331_7677938_7678046_7680083_7681573_7681652
88060	chrX	+	9312	8	Intergenic	novelGene_3913	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	58	238	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCATAACTACACCAAGGC	NA	False	NA	NA	False	NA	NA	NA	34409454	34822928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34411395_34411747_34414450_34590209_34591066_34591488_34592261_34740537_34740949_34743453_34745080_34745122_34745850_34822650
88061	chr10	+	1137	1	FSM	ENSMUSG00000069622.6	ENSMUST00000092511.6	630	1	-139	-368	-139	368	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGAC	1363	False	NA	NA	False	NA	NA	NA	59231437	59232574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59231400_59232600
88062	chr1	-	8597	10	Antisense	novelGene_ENSMUSG00000088363.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	51	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGAAAAGGCACTCCCTTC	NA	False	NA	NA	False	NA	NA	NA	118612892	118584164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_118584249_118586735_118586847_118589707_118589800_118592486_118592538_118592627_118592717_118593840_118593935_118596358_118596464_118597117_118597260_118603302_118603355_118605115
88064	chr2	+	1238	2	Genic_Genomic	ENSMUSG00000064193.9	novel	1302	1	NA	NA	-46	331	multi-exon	FALSE	non_canonical	0	0	junction_1	0	277	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTCTAAATTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	80667438	80669117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_80668441_80668881
88065	chr11	-	1345	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	269	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
88066	chr4	+	4474	21	FSM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	26	-668	26	668	multi-exon	TRUE	canonical	3	234	junction_5	35.2306684580353	2176	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTAGACTGTGTCTCTCTC	13	True	NA	NA	False	NA	NA	NA	40143106	40199006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
88067	chr9	+	938	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	901	-1	-91	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	145	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
88068	chr19	+	1093	8	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	113	-297	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4174.67964309227	2	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	2131	False	NA	NA	False	NA	NA	NA	8945692	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8945739_8946525_8946611_8947231_8947322_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
88069	chr12	-	3705	3	FSM	ENSMUSG00000021131.15	ENSMUST00000218740.2	981	3	302	-3026	-9	-18	multi-exon	FALSE	canonical	3	8000	junction_2	695.5	190	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTATTTTCTCACTGAG	NA	False	NA	NA	False	NA	NA	NA	80690583	80680813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80684385_80687730_80687819_80690537
88070	chr10	+	2105	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	194	811	-8	-197	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATAGGCTCCCCAATGC	1577	False	NA	NA	False	NA	NA	NA	79690454	79699455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
88071	chrX	-	1559	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	41	-625	-17	625	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	38	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATGGTTTATGTCCCAG	NA	False	NA	NA	False	NA	NA	NA	101232959	101227921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
88072	chr4	-	3625	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	21	-2905	21	2905	multi-exon	FALSE	canonical	3	402	junction_1	0	2852	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTAATTTTGTATATATAT	NA	False	NA	NA	False	NA	NA	NA	75196521	75192685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_75196007_75196217
88073	chr13	+	7215	2	Intergenic	novelGene_1402	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	767	40	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGGATTTTTCCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	62511771	62627963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62511827_62620803
88074	chr13	-	4742	28	NNC	ENSMUSG00000021569.11	novel	3399	13	NA	NA	-23111	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	248.711450197882	536	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATTCTCTTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	74109014	74060581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608_74086063_74086550_74086766_74086981_74087113_74088351_74088415_74088762_74088908_74090060_74090174_74090809_74090924_74092842_74092976_74094200_74094278_74095794_74095890_74098191_74098322_74099648_74099762_74102660_74102701_74103538_74103640_74105827_74105998_74108354
88075	chr11	+	291	5	NNC	ENSMUSG00000057322.13	novel	371	5	NA	NA	29	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7081.78283961744	5	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTATTAAAAACCCTGAA	NA	False	NA	NA	False	NA	NA	NA	114559402	114563132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_114559436_114559606_114559641_114559731_114559791_114562559_114562683_114563090
88076	chr15	-	2130	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	2	-158	0	0	multi-exon	FALSE	canonical	3	30	junction_2	34	615	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2268	False	NA	NA	False	NA	NA	NA	83135930	83110922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83112796_83114714_83114859_83135817
88077	chr9	-	743	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	39	-14	-39	mono-exon	FALSE	NA	NA	NA	NA	NA	132	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTTCGCTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
88078	chr11	-	2917	16	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	2811	978	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	272.741016758063	4	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97075896	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97068146_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752
88079	chrUn_MU069435v1	+	575	1	Intergenic	novelGene_4741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGGTTTGTCTCTGCGG	NA	False	NA	NA	False	NA	NA	NA	0	575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
88080	chr11	-	3359	17	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-17	978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	274.658360229122	93	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97078724	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062453_97071328_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
88081	chr17	+	2088	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	-240	1	240	mono-exon	FALSE	NA	NA	NA	NA	NA	34	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGCGGGCGTCGTGCCTC	NA	False	NA	-24	True	NA	NA	NA	40157244	40159332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159300
88082	SIRV1	-	1764	7	NNC	SIRV1A	novel	1561	6	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1501.26073869783	1296	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	11606	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6778_10282_10367_10444_10792_10897_11194_11406
88083	chrX	+	11753	6	Intergenic	novelGene_3914	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	248	337	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGTTTTGCTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	34409454	34825018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34411383_34411517_34413415_34591558_34592261_34740537_34745850_34820977_34820999_34823125
88084	chrM	-	1976	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	353	-1810	353	1810	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTGGATTTGCA	2471	False	NA	NA	False	NA	NA	NA	13717	11741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11700_13700
88085	chr9	+	636	5	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1576.10945051415	490	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959374_119960507
88086	chr4	-	8164	4	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	83	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCTTGACGACCCTAGT	NA	False	NA	NA	False	NA	NA	NA	42231478	41877853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41880988_42207622_42207630_42226364_42231138_42231228
88087	chr5	+	3779	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	609.08056026185	6	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTAATGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255595_108255778
88088	chr7	-	757	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5582.89117652215	32	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACAAGGCCTGACTGG	8438	False	NA	NA	False	NA	NA	NA	99132842	99128097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129135_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
88089	chr2	-	5104	4	NIC	ENSMUSG00000078903.11	novel	1956	6	NA	NA	5	346	intron_retention	FALSE	canonical	3	9	junction_2	99.5534473983141	26	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGTTCCCATTTCATA	NA	False	NA	NA	False	NA	NA	NA	175048664	175038388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_175039399_175039599_175043548_175044851_175044907_175048573
88090	chrM	+	694	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	262	1	262	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	25	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATATGTCTGATAAAAGA	154	False	NA	110	True	NA	NA	NA	3012	3706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3000_3700
88091	chr11	-	1839	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	18	10	18	-5	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	377	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGGGATTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	120472432	120468939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
88092	chr18	-	3795	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_31	461.780734126046	1829	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTTTGGGCCATGTTAT	NA	False	NA	NA	False	NA	NA	NA	42395254	42335416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395151
88093	chr9	-	1836	1	Genic_Genomic	ENSMUSG00000060461.6	novel	NA	NA	NA	NA	18	728	mono-exon	FALSE	NA	NA	NA	NA	NA	1206	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCAGCTTCCTTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	78275441	78273605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_78273600_78275400
88094	chrX	-	4961	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	41	-1658	28	1658	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	10	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGGAAGATATTT	NA	False	NA	NA	False	NA	NA	NA	37665032	37620492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
88095	chr11	-	2251	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	114	1194	49	-1	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	272	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9730	False	NA	NA	False	NA	NA	NA	106679244	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
88096	SIRV3	-	2846	5	NNC	SIRV3C	novel	796	3	NA	NA	0	2703	intron_retention	FALSE	non_canonical	0	0	junction_1	705.090774297891	3	86	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAAAACGTGCATCCTT	NA	False	NA	NA	False	NA	NA	NA	9943	6056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_-_7989_8131_8208_8755_8976_9189_9299_9434
88097	chr2	+	7394	13	Fusion	ENSMUSG00000082724.4_ENSMUSG00000078872.10	novel	973	4	NA	NA	-50	187513	multi-exon	TRUE	non_canonical	0	0	junction_1	57.3664511907633	755	50	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGGCTTAGTACCAGGA	NA	False	NA	NA	False	NA	NA	NA	176771998	177021637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_176772113_176775445_176775498_176776035_176776163_176776368_176776430_176778106_176778430_176832241_176832625_176832876_176833288_176837466_176838080_177002778_177007702_177008855_177008916_177009122_177009228_177017948_177018061_177021527
88098	chr10	+	2675	16	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-10118	202	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	136.808609215778	6	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGGCGCCCCGACCTTGC	NA	False	NA	NA	False	NA	NA	NA	75387319	75422236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75387610_75397567_75397641_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
88099	chr17	+	825	1	ISM	ENSMUSG00000034165.17	ENSMUST00000171031.8	2113	7	93806	2	1693	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATAAAGGTGGCTCTTGT	NA	False	NA	NA	False	NA	NA	NA	47909781	47910606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_47909800_47910600
88100	chrM	+	1020	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-60	-3	-60	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	267	False	NA	49	True	NA	NA	NA	2690	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
88101	chr11	+	1879	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	-48	1	-42	-1	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	565	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGTGGCCCTAGGAA	NA	False	NA	NA	False	NA	NA	NA	109317003	109327814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
88102	chr8	+	2848	9	NIC	ENSMUSG00000019428.17	novel	1799	9	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	424.114076635049	198	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	70980678	70987978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70981917_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
88103	chr5	-	3227	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	13	1	13	-1	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	619	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCCTCAGTCTGCTAATC	NA	False	NA	NA	False	NA	NA	NA	64126227	64066240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
88104	chr17	+	1750	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	98	1	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	74	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
88105	chrX	+	8649	4	Intergenic	novelGene_3909	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5655	187	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCGTTTCTCGTTG	NA	False	NA	NA	False	NA	NA	NA	34409454	34780435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34412076_34413355_34414040_34740497_34745808_34780401
88106	chr14	-	2094	6	NIC	ENSMUSG00000040472.16	novel	2435	15	NA	NA	208	0	intron_retention	FALSE	canonical	3	495	junction_1	15.357083056362	60	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55957382	55953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956209_55956320_55956410_55956547
88107	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
88108	chr3	+	2833	4	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	10812	1210	10812	-1210	3prime_fragment	FALSE	canonical	3	470	junction_1	22.4499443206436	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAGTTCTTCCGCAT	NA	False	NA	NA	False	NA	NA	NA	104556795	104564568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104556834_104558201_104558346_104560057_104560904_104562763
88109	chr9	+	2158	9	Fusion	ENSMUSG00000032185.16_ENSMUSG00000048429.11	novel	3585	14	NA	NA	1032	217	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTCTTCCTGTGGGAAA	224	False	NA	NA	False	NA	NA	NA	21499730	21504136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_21500854_21500929_21501057_21501141_21501330_21501411_21501574_21501651_21501768_21502721_21502809_21503193_21503277_21503356_21503515_21504022
88110	chr17	-	5966	7	NIC	ENSMUSG00000015120.16	novel	1286	8	NA	NA	43	1406	intron_retention	FALSE	canonical	3	84	junction_6	2271.94929154093	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	4790	False	NA	NA	False	NA	NA	NA	25492314	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
88111	chrX	+	3950	13	NNC	ENSMUSG00000000787.13	novel	4692	17	NA	NA	66	-73	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	127.185641878319	14	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCACAGTCTCCTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	13153588	13160218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155742_13156155_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
88112	chr4	+	1295	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	49	15	15	-15	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	127	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGAAAGATGCTATGGTG	NA	False	NA	NA	False	NA	NA	NA	108691846	108719309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
88113	chr9	+	3579	10	NNC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	2	-1	intron_retention	FALSE	canonical	0	0	junction_9	186.022765100948	3	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGAACCTTTTATAGT	9074	False	NA	NA	False	NA	NA	NA	15217511	15228265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15226428_15226678_15227322_15227484
88114	chr14	-	9754	29	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	3	102024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	132.371635934591	1114	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTCCCTCGGCGTAACT	NA	False	NA	NA	False	NA	NA	NA	21102528	20979485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20979756_21017604_21017677_21032641_21032791_21033433_21033541_21035690_21035816_21037023_21037184_21045076_21045169_21045910_21046059_21051196_21051351_21053160_21053339_21057181_21057372_21058927_21059126_21060102_21060233_21064976_21065127_21069345_21069455_21070544_21070849_21072069_21072196_21074173_21074358_21079241_21079451_21079852_21079951_21081650_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
88115	chr3	+	1016	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	40	3	7	-3	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3597	False	NA	NA	False	NA	NA	NA	88486954	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
88116	chr17	+	1846	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	2	1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	80	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGGGAGACTGTGGAGGA	NA	False	NA	-24	True	NA	NA	NA	40157244	40159090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159100
88117	chr3	-	4242	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	3	-71	combination_of_known_splicesites	FALSE	canonical	3	88	junction_7	262.710595794797	1	75	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAAATGAGAACTTCAC	NA	False	NA	NA	False	NA	NA	NA	10416370	10405085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10416118_10416301
88118	chr8	-	4451	28	NNC	ENSMUSG00000002885.15	novel	3000	20	NA	NA	-6023	8052	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	89.6843267446929	3755	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAGAGGAAAGGATGATGG	NA	False	NA	NA	False	NA	NA	NA	84460982	84441827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_84441964_84446012_84446227_84446439_84446567_84447175_84447269_84447583_84447769_84448361_84448480_84448856_84448988_84449074_84449187_84449276_84449423_84449515_84449663_84449751_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924
88119	chr11	-	3556	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9078	248	at_least_one_novel_splicesite	FALSE	canonical	3	249	junction_15	384.021504027516	24	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCATTCCCCCACCCCCG	346	False	NA	NA	False	NA	NA	NA	106615298	106544794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606008_106615196
88120	chr7	+	3605	30	NNC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	2297	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_26	114.506405949917	77	44	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAGATAGCAGTGTCTC	NA	False	NA	NA	False	NA	NA	NA	118342268	118440704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425541_118432924_118433091_118437335_118437455_118439777_118439925_118440418
88121	chr17	+	2056	1	Intergenic	novelGene_188	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGCTGTGGTTTGGAGGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
88122	chr2	+	3035	9	NNC	ENSMUSG00000026662.14	novel	738	6	NA	NA	511	354	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	188.64943513035	903	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAACTATACTGTTGGAC	5284	False	NA	NA	False	NA	NA	NA	4887566	4913302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_4887646_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
88123	chr1	-	3884	20	NNC	ENSMUSG00000026576.13	novel	2580	6	NA	NA	-1	129483	intron_retention	FALSE	non_canonical	0	0	junction_1	537.734608980388	1554	12	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAAGCTGCTTCGTCTCCA	NA	False	NA	NA	False	NA	NA	NA	164285925	164135194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_164135323_164135627_164135817_164140418_164140506_164155859_164155969_164160179_164160346_164168295_164168407_164170780_164170834_164172787_164172996_164175342_164175447_164206925_164206991_164208204_164208279_164213268_164213371_164230538_164230645_164264582_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329_164285442_164285735
88124	chr9	+	711	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	73	225	3	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400582	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
88125	chr13	+	5239	1	Intergenic	novelGene_1551	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113855139	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113855100_113860400
88126	chr16	-	5038	33	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	19	28350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2420.38102549862	8	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAACGCGGCATTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	87292728	87251863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255629_87258850_87259026_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87269057_87269994_87270072_87271467_87271562_87272304_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288242_87288304_87288340_87290594_87290675_87291224_87291316_87292616
88127	chr4	-	2504	4	FSM	ENSMUSG00000051557.16	ENSMUST00000142724.8	883	4	9	-1630	9	-2	multi-exon	FALSE	canonical	3	293	junction_3	42.5519290592879	268	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9144	False	NA	NA	False	NA	NA	NA	155976174	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_155975127_155975209_155975360_155975508_155975697_155975814
88128	chr1	+	7937	15	Fusion	ENSMUSG00000048174.3_ENSMUSG00000026439.15	novel	3385	15	NA	NA	-1643	-22	intron_retention	FALSE	canonical	2	4	junction_1	94.327831502258	142	74	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAAAATAATTCACAGG	NA	False	NA	NA	False	NA	NA	NA	132403459	132436355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_132404867_132405044_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
88129	chr2	-	2779	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	314	-1896	28	1896	multi-exon	FALSE	canonical	3	201	junction_2	6.37867541108654	740	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGTAAAACCCTGTCTTAA	NA	False	NA	NA	False	NA	NA	NA	105833580	105795157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
88130	chr1	-	1114	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGTGGGCGGCGAAGGTG	9064	False	NA	NA	False	NA	NA	NA	86458415	86454530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
88131	chr11	-	1820	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	39	8	39	-3	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	107	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGATTGTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	120472411	120468937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
88132	chr2	-	2066	5	ISM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	137	130	137	-130	intron_retention	FALSE	canonical	3	1968	junction_1	228.320361553673	6	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCATAGAGCAGTGCCGC	8362	False	NA	NA	False	NA	NA	NA	132095097	132091211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822
88133	chr12	+	2326	12	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	187.962674332296	1040	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAAAAAAAGTGTGAAGTA	2865	False	NA	NA	False	NA	NA	NA	109612563	109628140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179_109628027_109628065
88134	chr7	-	921	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	46	1	1	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	10	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	45109262	45107368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
88136	chr2	+	3838	26	Intergenic	novelGene_2638	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	486	13	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCCGGAGTCCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	62161975	62242701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_62163064_62164599_62164676_62164941_62165014_62175399_62175465_62178161_62178262_62178844_62178899_62182464_62182663_62184882_62184952_62186958_62187059_62187303_62187354_62189128_62189252_62189621_62189675_62190630_62190696_62190951_62191061_62193005_62193050_62195270_62195407_62203097_62203210_62204707_62204871_62208547_62208668_62209439_62209514_62209620_62209674_62215517_62215586_62216773_62216867_62217408_62217507_62241560_62241644_62242129
88137	chr17	-	1872	10	NNC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	98	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.4545047902389	208	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAAATTGACTGATT	NA	False	NA	NA	False	NA	NA	NA	26309096	26300213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26300960_26301067_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
88138	chr1	-	1124	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGCGGCGAAGGTGGCT	9057	False	NA	NA	False	NA	NA	NA	86458422	86454527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
88139	chr16	-	2880	2	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-220	846	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	0	258	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTAAAAAAAGATTTTAGT	6351	False	NA	NA	False	NA	NA	NA	93592009	93588177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_93590505_93591456
88140	chr6	-	500	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	-25	-52	-25	52	mono-exon	FALSE	NA	NA	NA	NA	NA	855	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGCCTACAGAACTC	NA	False	NA	NA	False	NA	NA	NA	66852752	66852252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_66852300_66852800
88141	chr4	+	5504	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	35	1659	multi-exon	TRUE	non_canonical	0	0	junction_5	70.7282814432697	25	121	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTTCCAGGTTCCAGGT	NA	False	NA	NA	False	NA	NA	NA	147216529	147419850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147219028_147219122_147224494_147224577_147249797_147249844_147260303_147261171_147413405_147413566_147415724_147418681_147418838
88142	chr3	+	2863	9	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	-7	-11	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_8	221.180356270624	507	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACACTGAAGTACGCAGT	NA	False	NA	NA	False	NA	NA	NA	30847477	30875401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
88143	chr3	+	3619	10	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	7	-5	intron_retention	FALSE	canonical	3	73	junction_3	797.54397688261	1	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACAGTGAATCTCATTTT	NA	False	NA	NA	False	NA	NA	NA	79498678	79510578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498865_79500916_79501058_79502508_79504869_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
88144	chr1	-	3436	11	NNC	ENSMUSG00000013997.11	novel	1335	7	NA	NA	-1	8537	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	64.3245676238869	980	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGCCTCACGGAGCCGCA	895	False	NA	NA	False	NA	NA	NA	171173197	171157038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171157094_171165817_171166206_171166387_171166496_171167757_171167907_171168394_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
88145	chrM	+	1339	2	Genic_Genomic	ENSMUSG00000064339.1	novel	1582	1	NA	NA	0	-119	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCCCAGTACGAAAGGACA	-3	True	NA	22	True	NA	NA	NA	1093	2556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2352_2475
88146	chr8	-	5443	11	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	7	1590	intron_retention	TRUE	non_canonical	0	0	junction_5	1031.284485484	598	94	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTTCAAACTCAAGAGATC	NA	False	NA	NA	False	NA	NA	NA	26337715	26304433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317364_26323790_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
88147	chr10	-	7623	12	ISM	ENSMUSG00000047146.18	ENSMUST00000174189.2	14369	13	19634	5922	530	2123	3prime_fragment	FALSE	canonical	3	87	junction_3	53.7757818236407	858	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTCAAGCTGATGTGTT	NA	False	NA	NA	False	NA	NA	NA	62715263	62646277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930
88148	chr2	-	1345	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	172	1025	19	-1017	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3804	False	NA	NA	False	NA	NA	NA	154734683	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
88149	chr17	+	3405	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	-3356	485	multi-exon	FALSE	non_canonical	0	0	junction_1	0	192	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTCCTCCCCGCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	40153887	40159577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40154904_40157188
88150	chr6	+	2832	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	10	3953	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_8	1183.53527619586	4	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTCTTTTTGGCCTCATA	NA	False	NA	NA	False	NA	NA	NA	86986227	87009396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87007579
88151	chr2	-	3875	14	FSM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	285	-732	-15	732	multi-exon	FALSE	canonical	3	204	junction_8	24.6650940380394	543	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTCCCAACTACCACTTG	NA	False	NA	NA	False	NA	NA	NA	145776649	145758666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
88152	chr2	+	1815	14	FSM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	-1	5925	-1	-345	multi-exon	FALSE	canonical	3	168	junction_11	23.2697075602773	21	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTCATTGTAACTTGAG	NA	False	NA	NA	False	NA	NA	NA	70886086	70920277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
88154	chr11	+	3024	8	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	10	1617	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	76.3271690467679	1	140	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	NA	False	NA	NA	NA	62349295	62406860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62349521_62364193_62364295_62394504_62394596_62398552_62398644_62402963_62403122_62403752_62404613_62404755_62405806_62406412
88155	chr1	-	6507	10	NNC	ENSMUSG00000026274.12	novel	349	2	NA	NA	-26295	-5511	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1423	78	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCTTTTGGCTCCTCCGA	9773	False	NA	NA	False	NA	NA	NA	93297499	93270681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93271433_93273876_93274013_93278047_93278109_93278674_93278741_93279225_93279359_93280238_93280401_93282049_93282166_93285476_93285584_93288447_93288534_93292610
88156	chr1	+	1426	6	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-4	-16	intron_retention	FALSE	non_canonical	0	0	junction_5	1313.24903959607	12	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTTAAAAAAATACATC	NA	False	NA	NA	False	NA	NA	NA	63216283	63219629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218808_63219466
88157	chrM	+	1626	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-841	-1	-841	1	mono-exon	FALSE	NA	NA	NA	NA	NA	271	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-11	True	NA	NA	False	NA	NA	NA	7765	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9400
88158	chr2	+	4811	20	NNC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-35	99970	intron_retention	FALSE	non_canonical	0	0	junction_11	137.053601742867	1219	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCCCTCCACCCAGGAC	5646	False	NA	NA	False	NA	NA	NA	22785571	22930248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834_22832062_22836589_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884702_22929959
88159	chr13	+	2661	3	NNC	ENSMUSG00000005397.9	novel	646	3	NA	NA	664	65866	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	443.5	645	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTATCTATCTATCAGCTA	NA	False	NA	NA	False	NA	NA	NA	13683960	13752720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_13684131_13684530_13686833_13752531
88160	chr12	-	2703	4	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	11.8977121983832	15	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTAAAGCATTATTATT	NA	False	NA	NA	False	NA	NA	NA	86516816	86487253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86487459_86487857_86489771_86508048_86508306_86516488
88161	chr3	+	2997	18	Antisense	novelGene_ENSMUSG00000002227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.235294117647059	7	69	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCCCTACCTCTGACG	NA	False	NA	NA	False	NA	NA	NA	104702207	104725495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702379_104703175_104703299_104704077_104704152_104704281_104704477_104704589_104704702_104706701_104706922_104707011_104707110_104707259_104707366_104707590_104707748_104708000_104708144_104708258_104708450_104708713_104708876_104709747_104709910_104710107_104710246_104711447_104711705_104711789_104712029_104712218_104712424_104725251
88162	chr2	-	1239	6	NNC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	149	-124	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	919.018041172207	2	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8374	False	NA	NA	False	NA	NA	NA	132095085	132091205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132091616_132091693_132091818_132093163_132093353_132093610_132093679_132093822_132093921_132094735
88163	chr5	+	2195	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1206.0943862895	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871570_129872192_129872316_129873810_129873914_129874423_129874497_129874588
88164	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
88166	chr14	+	1338	10	NNC	ENSMUSG00000021957.8	novel	1619	13	NA	NA	-34	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	690.567417436336	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAATCCTCAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	30271279	30295574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280746_30290137_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
88167	chr11	+	2348	12	NNC	ENSMUSG00000020513.16	novel	2070	10	NA	NA	242	356684	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	19.8486005085689	1337	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGGGGGTGCATGCC	NA	False	NA	NA	False	NA	NA	NA	86436058	86814870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_86436163_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862_86458171_86458278_86458463_86510121_86510269_86814572
88168	chr9	+	4240	16	FSM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	16	-1860	-16	1339	multi-exon	FALSE	canonical	3	295	junction_2	39.3725228497687	1153	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCCATTCTTAGACTC	NA	False	NA	NA	False	NA	NA	NA	114230159	114305305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
88169	chr2	+	3166	9	NNC	ENSMUSG00000026662.14	novel	738	6	NA	NA	486	348	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	188.329498486031	903	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGCAGAAACTATACTG	5259	False	NA	NA	False	NA	NA	NA	4887541	4913296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_4887758_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
88171	chr2	-	3033	8	NNC	ENSMUSG00000027274.17	novel	2935	6	NA	NA	-108833	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	104.080816323329	106	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAGTTGTATACAATCCT	NA	False	NA	NA	False	NA	NA	NA	136842142	136715704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136733198_136733307_136747460_136747521_136842103
88172	chrX	+	471	5	FSM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	17	-5	17	-1	multi-exon	FALSE	canonical	3	10431	junction_4	1336.12412877696	118	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTTCTCCTGTTGAGTG	NA	False	NA	NA	False	NA	NA	NA	133486419	133488810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133486469_133486826_133486933_133487259_133487328_133488199_133488323_133488685
88173	chr8	-	2169	17	FSM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	199	1257	19	471	multi-exon	FALSE	canonical	3	463	junction_12	36.2439650148821	302	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGGCTCGCTGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	89088623	89058943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
88174	chr4	-	1393	8	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	118.182321962677	555	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9111	False	NA	NA	False	NA	NA	NA	155976207	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155973626_155973890_155974054_155974125_155974364_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
88175	chr15	+	2783	15	FSM	ENSMUSG00000056851.15	ENSMUST00000077037.13	2952	15	161	8	34	-6	multi-exon	FALSE	canonical	3	59	junction_1	143.98145076108	2601	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTATGTACAAGGAATAAGA	2181	False	NA	NA	False	NA	NA	NA	102379145	102408488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
88176	chr7	-	1723	7	NNC	ENSMUSG00000002635.12	novel	1295	7	NA	NA	-9	2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	287.318880146935	51	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTTTACCTTATTT	5723	False	NA	NA	False	NA	NA	NA	33896095	33884055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33884237_33885718_33886419_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
88177	chr14	-	2516	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	164	11	0	-11	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	1084	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCTTTACCCTGCT	4859	False	NA	NA	False	NA	NA	NA	54754818	54744654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
88178	chr7	-	2321	4	FSM	ENSMUSG00000074129.15_ENSMUSG00000065219.3	ENSMUST00000210792.2	464	4	-1856	-1	0	0	multi-exon	FALSE	canonical	3	15796	junction_2	745.970955645504	251	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778159	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132
88179	chr15	-	2010	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	254	-142	-64	7	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	14	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAACCGCTAATGTAG	694	False	NA	NA	False	NA	NA	NA	36793827	36771805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
88180	chr4	+	6304	3	Intergenic	novelGene_1932	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2163	33	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTCATCAATAAATTCC	NA	False	NA	NA	False	NA	NA	NA	116399687	116406150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_116399910_116399962_116405860_116405965
88181	chr2	-	3162	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	16	0	9	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	1503	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	NA	False	NA	NA	NA	136733293	136715699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
88182	chr13	-	10279	5	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5584	98	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	23514186	23354443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23356247_23357704_23361382_23509000_23510673_23510750_23513672_23513980
88183	chrX	+	13597	7	Antisense	novelGene_ENSMUSG00002076267.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	174	286	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTAAACCAGGGACTG	NA	False	NA	NA	False	NA	NA	NA	29454055	30143395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_29458512_29458839_29459156_29803624_29808758_30000890_30002101_30002468_30003241_30139175_30139586_30142095
88184	chr11	+	2586	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	72	6	72	-6	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	54	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCAGACCCTGGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	101207110	101214357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
88185	chr4	-	3220	7	Antisense	novelGene_ENSMUSG00000082352.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1241	53	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGGAATGGTGGAACTTC	NA	False	NA	NA	False	NA	NA	NA	145302699	145237348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237495_145257426_145257483_145263157_145263314_145263643_145264592_145264674_145264994_145301000_145301729_145301832
88186	chr7	-	3661	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	21	-1926	-6	1926	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	1351	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCGCATATATTGATACTG	NA	False	NA	NA	False	NA	NA	NA	138511214	138490638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
88187	chr4	+	1854	11	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	5	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCTGGAGCCCAGATGG	693	False	NA	NA	False	NA	NA	NA	137469492	137485963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882
88188	chrM	-	2673	1	Antisense	novelGene_ENSMUSG00000064338.1_AS_novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTACACTATGATTATTC	9986	False	NA	-1	True	NA	NA	NA	3710	1037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1000_3700
88189	chr1	+	6693	14	Fusion	ENSMUSG00000048174.3_ENSMUSG00000026439.15	novel	3385	15	NA	NA	-221	-22	intron_retention	FALSE	canonical	3	277	junction_4	39.7596328248497	113	74	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAAAATAATTCACAGG	NA	False	NA	NA	False	NA	NA	NA	132404881	132436355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
88190	chr3	+	2294	9	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	13	-2	combination_of_known_junctions	FALSE	canonical	3	65	junction_8	1429.67163515788	5340	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACCGGCTTGACTTTGT	NA	False	NA	NA	False	NA	NA	NA	89986859	90008206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834
88191	chr3	-	8916	11	NNC	ENSMUSG00000040943.13	novel	9021	12	NA	NA	31587	-13	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	56.588338021186	443	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATTTAATGCACTCAAG	NA	False	NA	NA	False	NA	NA	NA	133218460	133169456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182394_133185102_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133218391
88192	chr13	-	858	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	30	0	-9	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	355	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	NA	False	NA	NA	NA	98453484	98446404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
88193	chr17	-	1315	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-219	3014	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	169	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGGCTCACCTAGGGAC	NA	False	NA	NA	False	NA	NA	NA	35821667	35816959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
88194	chr2	-	3323	21	NIC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	72.1889707642379	726	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	NA	NA	NA	77776702	77726109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
88195	chr10	-	2336	15	NNC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-6292	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	494.26653554865	32	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	4791	False	NA	NA	False	NA	NA	NA	80640752	80631932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633743_80633812_80633914_80634638_80637027_80637191_80637287_80637360_80638229_80638279_80638625_80638734_80639291_80639342_80639414_80639556_80639651_80639721_80639803_80639933_80640598
88196	chr11	-	3099	21	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	201	212	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	190.034016691749	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGCCTGTCTCTTTGAA	9367	False	NA	NA	False	NA	NA	NA	102207300	102196537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102196676_102196868_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
88197	chr4	+	1733	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	288	6	0	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	436	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150321696	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
88198	chr2	-	1200	10	NIC	ENSMUSG00000027170.13	novel	1283	11	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	721.072623523499	59	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2662	False	NA	NA	False	NA	NA	NA	104847403	104830000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_104830187_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
88199	chr7	-	873	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	73	3	5	2	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTACCAAGGCTGTGAG	7008	False	NA	NA	False	NA	NA	NA	12768661	12765943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
88200	chr3	+	3362	6	NNC	ENSMUSG00000001418.14	novel	4219	6	NA	NA	15	728	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	388.306579908196	1282	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTATTCCGGTCTTCT	4010	False	NA	NA	False	NA	NA	NA	88232344	88237546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88232741_88232983_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
88201	chr1	-	4135	11	ISM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	2015	4230	623	3293	3prime_fragment	FALSE	canonical	2	3444	junction_4	967.812874475226	14	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATCCAGTTGTCTAATG	NA	False	NA	NA	False	NA	NA	NA	178163347	178156137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451
88202	chr7	+	2924	19	NNC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	5614	6	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_3	14.2837212013545	69	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTCTGTTCCAAGC	NA	False	NA	NA	False	NA	NA	NA	30164763	30186654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30165078_30165176_30165307_30165433_30165607_30166560_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
88203	chr3	+	2004	8	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-22	1349	intron_retention	FALSE	non_canonical	0	0	junction_7	2287.57378826011	5	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGGGGCGATCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	88483160	88497075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495706_88496882
88204	chr19	+	288	1	Intergenic	novelGene_1241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	166	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATGTGAAGACCTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	28750468	28750756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_28750500_28750800
88205	chr8	+	6717	7	Fusion	ENSMUSG00000071796.14_ENSMUSG00000071793.13	novel	4009	6	NA	NA	15	-765	multi-exon	FALSE	non_canonical	0	0	junction_5	585.800212434998	41	80	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTATCCCTTACCATACA	NA	False	NA	NA	False	NA	NA	NA	20016480	20172229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20042916_20043091_20045735_20170092
88206	chr15	-	1503	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	3	0	-3	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	26490	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTTTATTTTGCTTGA	2663	False	NA	NA	False	NA	NA	NA	43146115	43113456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
88207	chr2	+	2565	9	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	992	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	3776.22781357269	138	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATTTGTTAATGGGCAT	7481	False	NA	NA	False	NA	NA	NA	75489610	75497457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493264_75495595_75495646_75495741
88208	chr7	+	984	1	Antisense	novelGene_ENSMUSG00000086583.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1239	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCGAGAACTTCTTGC	6949	False	NA	NA	False	NA	NA	NA	114304486	114305470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_114304500_114305500
88209	chrX	+	2768	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	36	0	36	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	2756	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	74139495	74153383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
88210	chrX	-	6225	11	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-11564	285	intron_retention	FALSE	non_canonical	0	0	junction_7	199.936489916173	136	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGATGGGACCCATTTT	NA	False	NA	NA	False	NA	NA	NA	72172872	72151729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72161361_72166671_72166740_72167032_72167130_72168421_72168588_72170422
88211	chr19	-	5304	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCAAGTCCATTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	22705271	22699753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773
88212	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	99	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
88213	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
88214	chr10	+	2371	14	NIC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	60.7702044712644	63	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	75404448	75422025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_75404804_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
88215	chr11	+	1097	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	350	0	-4	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	1599	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTGGCTTCTATATGTG	NA	False	NA	NA	False	NA	NA	NA	48691186	48696911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
88216	chr11	+	4093	19	Antisense	novelGene_ENSMUSG00000001440.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGCATGAACACTGGGC	1710	False	NA	NA	False	NA	NA	NA	97052577	97073465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_97053508_97054178_97054343_97054740_97054855_97055550_97055657_97055778_97055923_97056201_97056307_97056869_97056958_97058377_97058523_97059692_97059763_97059973_97060122_97060727_97060858_97062346_97062542_97063880_97064107_97066577_97066676_97068070_97068183_97069095_97069181_97069688_97069754_97071269_97071422_97072449
88217	chr5	+	841	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	1005	277	77	-1	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	13	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTGGTGTCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	121343548	121347027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
88218	chr13	-	5559	17	NNC	ENSMUSG00000021149.9	novel	8783	17	NA	NA	-52	2869	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	191.894980637196	2303	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTCTAATGAATCCTGT	NA	False	NA	NA	False	NA	NA	NA	9046171	9019646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041746_9041888_9041967_9042072_9042680_9042852_9045984
88219	chr4	+	2898	12	NNC	ENSMUSG00000040945.14	novel	3999	15	NA	NA	4863	-1754	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1331.00141880447	13	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTTAAGTTGTATTT	7244	False	NA	NA	False	NA	NA	NA	140433646	140448777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_140433823_140434085_140435356_140437643_140437788_140439441_140439574_140439896_140439986_140440709_140440825_140443176_140443344_140444330_140444512_140444935_140445042_140445650_140445724_140447855_140447934_140448410
88220	chrX	+	16242	12	Intergenic	novelGene_3915	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8385	397	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTTTTGCTTCTATATTG	NA	False	NA	NA	False	NA	NA	NA	34409454	34825020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34414366_34427071_34427109_34588347_34588523_34588631_34588844_34589150_34589898_34589934_34591241_34591457_34592261_34740537_34745734_34745833_34745872_34820972_34821632_34822631_34824118_34824348
88221	chr17	+	1286	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1751.13484632109	14	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3055	False	NA	NA	False	NA	NA	NA	35816933	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821015_35821217
88222	chr7	+	2845	13	ISM	ENSMUSG00000004056.16	ENSMUST00000051356.12	2923	14	2764	-1	-40	1	3prime_fragment	FALSE	canonical	3	377	junction_5	57.3139502118715	468	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTCCACATTTCCTTAG	NA	False	NA	NA	False	NA	NA	NA	27308046	27338879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
88223	chrM	+	1124	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	20	0	20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	18	False	NA	107	True	NA	NA	NA	14164	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
88224	chr8	-	645	3	ISM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	2212	371	1958	-371	3prime_fragment	FALSE	canonical	3	7531	junction_1	92	55	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCTGCCCTTATTAACT	NA	False	NA	NA	False	NA	NA	NA	46662109	46660204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_46660658_46661434_46661576_46662058
88225	chr9	-	4915	28	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.566557723732531	1	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCGAGAGACCGAGAGAG	6429	False	NA	NA	False	NA	NA	NA	72656886	72569799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569907_72578521_72578584_72584594_72584674_72584772_72584813_72593341_72593395_72616391_72616444_72617758_72617820_72619446_72619547_72625497_72625667_72628582_72628699_72628776_72628944_72632298_72632364_72633691_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648968_72649932_72650041_72650819_72650917_72653686_72653759_72654404
88226	chr1	-	1423	10	FSM	ENSMUSG00000026000.17	ENSMUST00000027149.12	4270	10	-11	2858	-4	0	multi-exon	FALSE	canonical	3	56	junction_9	152.892845556037	571	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	NA	False	NA	NA	NA	67078035	67042533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077934
88227	chr10	+	5011	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	7	5	7	-5	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	936	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGAATGCTCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	111808575	111824332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
88228	chr1	-	5510	7	NNC	ENSMUSG00000026576.13	novel	2580	6	NA	NA	-1	3277	intron_retention	FALSE	non_canonical	0	0	junction_6	462.867061548634	10	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAGAAAGTCCACAACTC	NA	False	NA	NA	False	NA	NA	NA	164285925	164261400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329_164285435_164285782
88229	chr5	+	850	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	35	14	-9	-14	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	75	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGAAAAAGCTTACACACA	4523	False	NA	NA	False	NA	NA	NA	122529975	122544228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
88230	chr3	+	5833	5	Antisense	novelGene_ENSMUSG00000103339.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	137	71	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAATGTAATCCAGTATAT	NA	False	NA	NA	False	NA	NA	NA	12384134	12608861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_12384277_12386992_12387158_12425985_12428867_12537715_12537935_12606435
88231	chr14	+	2539	3	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	2966	5	2503	-5	3prime_fragment	FALSE	canonical	3	3503	junction_2	111	495	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGTGGTGCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	99539092	99552467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_99539691_99540853_99540914_99550586
88233	chr11	+	3100	8	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-14	1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	81.6765647201803	346	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	NA	False	NA	NA	NA	62349271	62406860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403794_62405862_62406501
88234	chr3	+	4867	5	Antisense	novelGene_ENSMUSG00000040943.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	52	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGTCTGACCTAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	133185899	133224127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_133187186_133188996_133189081_133191274_133194478_133219788_133219934_133223978
88235	chr3	-	1857	8	NIC	ENSMUSG00000039795.15	novel	954	8	NA	NA	3	-24	combination_of_known_junctions	FALSE	canonical	3	11	junction_7	278.12741170704	116	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTCCTGTAACAAAGCG	NA	False	NA	NA	False	NA	NA	NA	10416370	10405038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416228
88236	SIRV6	-	1970	1	Antisense	novelGene_SIRV6A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	62	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAACTTATGGCCGCGTAT	NA	False	NA	NA	False	NA	NA	NA	10968	8998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV6_-_9000_11000
88237	chr3	+	863	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	104	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	66	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGCTTTAAACTTGCT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
88238	chr5	-	2674	1	ISM	ENSMUSG00000041313.15	ENSMUST00000048116.15	7179	13	69815	6	12640	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	44	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAACTCACTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	148266899	148264225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_148264200_148266900
88239	chr7	+	898	2	Genic_Genomic	ENSMUSG00000081491.2_ENSMUSG00000078380.2	novel	456	1	NA	NA	-61	12	multi-exon	FALSE	non_canonical	0	0	junction_1	0	281	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCTAATTCTAAATATACA	NA	False	NA	NA	False	NA	NA	NA	33875075	33950930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_33875494_33950450
88240	chr15	-	1754	7	NNC	ENSMUSG00000023050.10	novel	5185	14	NA	NA	10993	14477	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	72	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTACTCTTTAGGGTAA	NA	False	NA	NA	False	NA	NA	NA	102408142	102391603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_102391713_102392590_102392674_102395520_102395565_102396639_102396712_102398185_102398243_102399068_102399237_102406921
88241	chr15	+	1815	11	Antisense	novelGene_ENSMUSG00000002524.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	150532	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGCTCCCTCCGCAGTCT	988	False	NA	NA	False	NA	NA	NA	75942045	75952758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_75942479_75942599_75942830_75943024_75943166_75943313_75943506_75943588_75943801_75944079_75944174_75944254_75944424_75947396_75947480_75947584_75947687_75949452_75949552_75952698
88242	chr1	-	617	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	64	-3	64	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653668	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653700
88243	chr17	+	3025	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	41	-472	0	-4	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	931	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGGTTGGAGTATATTTT	NA	False	NA	NA	False	NA	NA	NA	29251646	29262343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
88244	chr1	-	4799	7	ISM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	-964	-18	-964	18	intron_retention	FALSE	canonical	3	343	junction_5	37.0135110466435	598	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGGTTTTAAAGCTGGT	NA	False	NA	NA	False	NA	NA	NA	13198351	13183662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389
88245	chr19	+	4870	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	12	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	1009.02038576477	76	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	1481	False	NA	NA	False	NA	NA	NA	44282526	44295298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44294981_44295146
88246	chr4	+	4143	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	-30	41577	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	51.9907684113247	461	75	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGCCTATGCAATTATGTC	NA	False	NA	NA	False	NA	NA	NA	146206870	146256581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207267_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
88247	chr10	-	2259	7	FSM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	-24	5	3	0	multi-exon	FALSE	canonical	3	439	junction_2	273.112309011024	459	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8251	False	NA	NA	False	NA	NA	NA	128540896	128533812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
88248	chr11	-	1228	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	182	223	48	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	14	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113024	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
88249	chr13	-	1418	13	NNC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	282.817999486124	2328	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGATTTATGATTAG	NA	False	NA	NA	False	NA	NA	NA	100867441	100839819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100862029_100862147_100866965_100867026_100867281
88250	chr18	+	4741	5	NNC	ENSMUSG00000102428.2	novel	5080	4	NA	NA	-9841	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.2090017297661	536	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	NA	False	NA	NA	False	NA	NA	NA	37888791	37974926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_37891199_37901378_37901594_37958073_37958133_37966317_37966407_37972955
88252	chr1	-	970	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-185	-2	-185	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653237	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653200
88253	chr9	+	4895	10	NIC	ENSMUSG00000032279.12	novel	2580	11	NA	NA	12	1	intron_retention	FALSE	canonical	3	1656	junction_1	101.379497281925	14	119	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	NA	False	NA	NA	False	NA	NA	NA	54493776	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_54493828_54497141_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
88254	chr6	-	2704	4	FSM	ENSMUSG00000029752.13	ENSMUST00000140097.2	448	4	-1697	-559	-1697	258	multi-exon	FALSE	canonical	3	8136	junction_3	423.973531668612	588	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTGTTTGTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	7679082	7674910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230
88255	chr14	-	956	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	40	566	40	-566	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1728	False	NA	NA	False	NA	NA	NA	19873852	19861984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
88256	chr12	+	6082	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	-42	-3350	-42	3246	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	535	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGTGCTTGTTTTCTTCC	3303	False	NA	NA	False	NA	NA	NA	83734883	83785219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
88257	chr4	-	3925	10	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	19	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	334.996885926193	11	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTTTGAGTGAATGT	2511	False	NA	NA	False	NA	NA	NA	129229144	129200884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129212257_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
88258	chr4	-	1350	4	NIC	ENSMUSG00000047675.16	novel	860	6	NA	NA	0	-1	intron_retention	FALSE	canonical	3	8358	junction_3	1958.56290852928	66	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGTCTAGGTGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	117013281	117011031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117011185_117011495_117011626_117011834_117012875_117013254
88259	chrM	+	2437	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	13	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	10	False	NA	35	True	NA	NA	NA	1106	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_1603_1761
88260	chr17	+	3387	17	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	690.44607127838	4	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	502	False	NA	NA	False	NA	NA	NA	56610402	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610553_56612169_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
88261	chr1	-	3789	19	NNC	ENSMUSG00000026576.13	novel	2580	6	NA	NA	21	129384	intron_retention	FALSE	non_canonical	0	0	junction_1	547.017189451626	1307	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCCTGTACACAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	164285903	164135293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_164135323_164135627_164135818_164155859_164155969_164160179_164160346_164168295_164168407_164170780_164170834_164172787_164172996_164175342_164175447_164206925_164206991_164208204_164208279_164213268_164213371_164230538_164230645_164264582_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329_164285444_164285625
88262	SIRV1	-	1967	8	NNC	SIRV1A	novel	1561	6	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2183.96813537344	5710	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	11606	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7761_10323_10367_10444_10792_10897_11194_11406
88263	chr9	+	1636	6	NIC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-2	71	intron_retention	FALSE	canonical	3	2998	junction_2	1125.01864873432	145	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTTGTGTTGAATACT	NA	False	NA	NA	False	NA	NA	NA	119956852	119960696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119956897_119957522_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
88264	chr2	+	5094	24	NNC	ENSMUSG00000062646.13	novel	4279	24	NA	NA	-48584	-704	intron_retention	FALSE	non_canonical	0	0	junction_1	4.99262215598563	519	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCTAACATTTCAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	120185792	120253436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120187019_120190013_120190046_120190519_120190576_120193359_120193422_120193842_120193914_120199721_120199828_120200922_120200983_120202004_120202114_120204391_120204454_120205893_120205993_120208372_120208474_120210071_120210256_120211247_120211310_120216254_120216372_120222660_120222706_120222794_120222850_120224842_120224956_120227841_120227929_120233190_120233251_120234384_120235541_120236746_120236810_120241915_120242025_120249838_120249967_120252505
88265	chr7	-	5612	19	NNC	ENSMUSG00000070426.13	novel	2344	9	NA	NA	-18287	4	intron_retention	FALSE	non_canonical	0	0	junction_9	169.280467104772	675	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACACGCATTTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	101732963	101668354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473_101715011_101719102_101719197_101720391_101720567_101722379_101722524_101725002_101725159_101726954_101727132_101727936_101728034_101728217_101728381_101729731_101729810_101730687_101730816_101731245
88266	chr15	-	2813	4	FSM	ENSMUSG00000048175.14	ENSMUST00000123626.8	1100	4	-26	-1687	-26	610	multi-exon	FALSE	canonical	3	84	junction_3	16.7531091641721	533	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTTTGGGAATGTACTT	NA	False	NA	NA	False	NA	NA	NA	98043613	98031907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98034320_98039164_98039270_98040531_98040696_98043481
88267	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	55	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
88268	chrX	-	4981	3	Intergenic	novelGene_3895	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	116	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	28627720	28622504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_28626337_28626505_28627218_28627283
88269	chr2	-	3914	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	-8	-935	-8	-511	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	794	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAACATTAGAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	26792899	26779511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
88270	chr9	+	1180	2	Genic_Genomic	ENSMUSG00000058838.10_ENSMUSG00000100027.2	novel	406	1	NA	NA	26	82	multi-exon	FALSE	non_canonical	0	0	junction_1	0	376	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTATTACCCTGACAGT	NA	False	NA	NA	False	NA	NA	NA	83291738	83380206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_83292222_83379509
88271	chr6	+	2219	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	26	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	1940.30100757589	14	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684552	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684921_122688489_122688768_122689587_122689675_122690100
88272	chrX	+	1220	7	FSM	ENSMUSG00000008682.14	ENSMUST00000008826.14	799	7	-430	9	-430	-9	multi-exon	FALSE	canonical	3	2920	junction_1	2439.95592514838	155	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGCTTATGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	73313987	73316732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_73314481_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
88273	chrX	-	2379	5	NNC	ENSMUSG00000040749.12	novel	1783	4	NA	NA	1	765	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	246.317884044176	479	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACCTTCCAATAACCT	NA	False	NA	NA	False	NA	NA	NA	162859116	162852935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_162853357_162853524_162855224_162856285_162856347_162858573_162858666_162859010
88274	chr2	-	1459	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	140	943	0	-935	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATTCCTGGGCTGTGGCA	3772	False	NA	NA	False	NA	NA	NA	154734715	154714272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
88275	chr1	+	1269	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	34	-480	-10	-8	multi-exon	FALSE	canonical	3	66	junction_1	0	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGATTTCTTGTATAG	NA	False	NA	NA	False	NA	NA	NA	181952335	181959964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_181952541_181958900
88276	chr11	-	1152	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8596.08321659735	166	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113075	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107023_33110328_33110441_33110827_33110886_33111113_33111226_33111547_33111628_33112921
88277	chr10	+	2543	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-98	224	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	94.4297600962574	481	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAACTGGAACAAAGCAATG	NA	False	NA	NA	False	NA	NA	NA	75399883	75422258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
88278	chr14	+	2054	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-21	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	760.960682140223	11	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271116	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271327_30280708_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294290_30295293
88279	chr5	+	956	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	261	-12	14	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	257	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	121342596	121347043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
88280	chr11	-	3013	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	206	67	201	2	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	2	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCGGCTGCCGTCTCTGTT	9367	False	NA	NA	False	NA	NA	NA	102207300	102196816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
88281	chr2	-	10266	4	Intergenic	novelGene_2849	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	202	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCACAGCAACCTGCAAAA	NA	False	NA	NA	False	NA	NA	NA	177417675	177159944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_177160005_177292818_177293086_177402590_177402762_177407907
88282	chr7	+	825	4	Genic_Genomic	ENSMUSG00000110350.2	novel	832	1	NA	NA	-1497	-531	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGGTCTGTTCCGTTCAA	NA	False	NA	NA	False	NA	NA	NA	45107395	45109193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_45107710_45107960_45108085_45108507_45108658_45108956
88283	chr16	+	591	2	Intergenic	novelGene_3805	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	48	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGGCCATCAGGATATTT	NA	False	NA	NA	False	NA	NA	NA	57211475	57225471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57212050_57225454
88285	chr7	-	4452	21	NNC	ENSMUSG00000025474.10	novel	3060	18	NA	NA	-3932	0	intron_retention	FALSE	non_canonical	0	0	junction_18	160.857265922308	489	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGGCTCAATGATTTC	NA	False	NA	NA	False	NA	NA	NA	139620514	139575867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259_139617334_139617427_139617494_139619237_139619361_139620155
88286	chr3	+	8868	16	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	-3	392	intron_retention	FALSE	non_canonical	0	0	junction_7	100.03763736159	35	37	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGGTCTGGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	88682519	88733286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88682582_88684290_88684822_88691614_88691807_88695643_88695746_88696664_88696706_88702770_88707026_88715213_88715413_88715862_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88725069_88726976_88727094_88727354_88728179_88733162
88287	chr15	-	3597	1	Intergenic	novelGene_3250	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATGGTGGTGAACAGAAAG	9795	False	NA	NA	False	NA	NA	NA	22705095	22701498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22701500_22705100
88288	chr6	-	1883	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	118	0	-26	0	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	64	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1685	False	NA	NA	False	NA	NA	NA	7693136	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
88289	chrX	+	15308	11	Intergenic	novelGene_3916	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	425	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGTTTTGCTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	34409636	34825018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34414358_34427071_34427356_34588347_34588523_34588630_34588844_34589150_34589898_34589934_34591241_34591457_34591771_34591937_34592261_34740537_34745850_34820977_34820999_34823125
88290	chr10	+	8519	13	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1238	56	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTGAAATCCAGTAAATCT	NA	False	NA	NA	False	NA	NA	NA	62646277	62728728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658538_62668677_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62713928_62715913_62728473
88291	chr17	-	2262	4	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	14	-372	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4503.49930609521	4	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTATTAACAGTATTATCT	NA	False	NA	NA	False	NA	NA	NA	36149184	36145184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146922_36147045_36147166_36147519_36147629_36148888
88292	chr2	-	2668	20	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	0	-211	intron_retention	FALSE	non_canonical	0	0	junction_8	102.185508348021	2	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	120234559	120186007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
88293	chr1	+	1185	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-29	at_least_one_novel_splicesite	FALSE	canonical	1	204	junction_3	9352.54701605397	3	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTTGTTCTAACAATGG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457269_86457452_86457527_86457686
88294	chr13	+	3551	4	NNC	ENSMUSG00000074867.5	novel	355	4	NA	NA	-16125	189121	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	14.613540144522	64	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTTGTACAACCACTCTG	NA	False	NA	NA	False	NA	NA	NA	62351244	62573079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62351373_62351567_62351629_62400347_62400380_62569749
88295	chr11	+	2772	15	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	3	159	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	61.3790913678498	88	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTTTTAAAAAAATGGTAA	NA	False	NA	NA	False	NA	NA	NA	29476410	29495438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29476488_29476692_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
88296	chr3	+	5437	27	NNC	ENSMUSG00000105552.2	novel	640	4	NA	NA	-965	31034	intron_retention	FALSE	non_canonical	0	0	junction_1	0	33	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCCGCGCCGCCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	89907456	89959786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89909784_89910551_89910623_89915565_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935681_89938598_89938677_89941370_89941485_89941961_89942006_89945674_89945773_89946154_89946324_89951006_89951118_89952160_89952238_89955075_89955207_89959761
88297	chr4	+	1184	1	Intergenic	novelGene_1920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1692	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGATAGCCAAGCTT	8216	False	NA	NA	False	NA	NA	NA	108439594	108440778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_108439600_108440800
88298	chr6	-	1861	5	ISM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	5205	1	-1314	0	3prime_fragment	FALSE	canonical	3	1259	junction_2	107.007885223473	74	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	NA	False	NA	NA	NA	124683936	124681344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703
88299	chr17	-	3650	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	-15	10	-15	-10	multi-exon	TRUE	canonical	3	548	junction_7	40.8821102534533	846	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTAAAGTATGCCTGTAA	NA	False	NA	NA	False	NA	NA	NA	56597526	56584485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
88300	chr3	-	1206	7	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-12	20290	at_least_one_novel_splicesite	FALSE	non_canonical	1	2	junction_1	55.9545946877168	212	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTCATTTAAAAGGTAAC	NA	False	NA	NA	False	NA	NA	NA	41482891	41455391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_41455721_41455802_41455873_41461680_41461800_41464877_41465010_41476693_41476891_41477378_41477680_41482833
88301	chr17	+	1750	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	98	1	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
88302	chr5	-	858	4	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7277	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCCACGCCCAGGGTGGC	NA	False	NA	NA	False	NA	NA	NA	129100229	129097948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129098054_129099064_129099253_129099436_129099608_129099835
88303	chr2	-	3204	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-32	824	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	226.029947551387	10	120	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTATACCCTTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	165740968	165668224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675232_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694064_165717624_165717696_165740835
88304	chr10	-	2371	15	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-21	0	intron_retention	FALSE	canonical	3	1936	junction_8	235.007826617389	19	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTTAATGTCTTACTGA	NA	False	NA	NA	False	NA	NA	NA	116899689	116886910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
88305	chr12	-	2201	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	10	-14	10	14	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	6966	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAATTGGGCTTTAGTTAT	NA	False	NA	NA	False	NA	NA	NA	21467628	21440057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
88306	chr1	-	2892	12	NNC	ENSMUSG00000026576.13	novel	2580	6	NA	NA	5	63863	intron_retention	TRUE	non_canonical	0	0	junction_1	609.124273170335	47	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGTACGGAGGGCAGAG	NA	False	NA	NA	False	NA	NA	NA	164285919	164200814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_164200902_164206925_164206991_164208204_164208279_164213268_164213371_164230538_164230645_164264582_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329_164285511_164285722
88307	chr1	-	1574	6	ISM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	2	12	-2	11	intron_retention	FALSE	canonical	3	174	junction_2	12.7436258576592	63	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTATCACATGTGA	NA	False	NA	NA	False	NA	NA	NA	58484643	58470167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747
88308	chr3	+	1963	7	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-57	162418	intron_retention	FALSE	canonical	0	0	junction_6	2199.60607584378	315	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTGTAGCAAGACCAAAGAA	NA	False	NA	NA	False	NA	NA	NA	88483125	88658144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88483911_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495729_88657948
88309	chr17	+	3238	16	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	2	-1039	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	232.489330699043	135	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTCCATTTCTAAGTC	NA	False	NA	NA	False	NA	NA	NA	32255385	32280791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321_32280347_32280617
88310	chr6	-	3874	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	226	-141	3	141	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	6	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAACCTCCAGCACTGCA	8916	False	NA	NA	False	NA	NA	NA	122719478	122704626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
88311	chr16	-	7691	4	Antisense	novelGene_ENSMUSG00000077172.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	66	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	0	True	NA	NA	False	NA	NA	NA	19236823	18960073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_18963915_18981130_18982200_19112819_19112836_19234058
88312	chr6	+	1921	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	14	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684602	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690480_122690693
88313	chr7	+	2205	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	-29	1	0	-1	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	19	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGGTTTTTTTTTTTTTT	624	False	NA	NA	False	NA	NA	NA	4743154	4750512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
88314	chr11	+	1119	5	NIC	ENSMUSG00000017404.13	novel	751	6	NA	NA	0	-15	intron_retention	FALSE	canonical	3	9068	junction_1	3124.88370783618	30	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCTTGTTTAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	97917782	97921303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_97917817_97918648_97919295_97920220_97920342_97920600_97920712_97921096
88315	chr11	-	4978	15	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-11	15135	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.634349022686	1416	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTCCGCCGCCCGTCCG	4392	False	NA	NA	False	NA	NA	NA	94544801	94520686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94520933_94522902_94522966_94525369_94525528_94525735_94525841_94529354_94529428_94532043_94532220_94534119_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
88316	chr9	-	3684	12	NIC	ENSMUSG00000062270.15	novel	1824	12	NA	NA	-80	1943	combination_of_known_junctions	FALSE	canonical	3	177	junction_11	2033.3811560108	10	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGACAAAAAACCACAACCAA	NA	False	NA	NA	False	NA	NA	NA	89996422	89971774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996266
88317	chrX	-	5808	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	-62	-79	-52	79	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	379	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAATTACTAGCACTCTGG	9990	False	NA	NA	False	NA	NA	NA	103457514	103324183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
88318	chr5	+	4543	12	FSM	ENSMUSG00000029283.18	ENSMUST00000118261.8	3129	12	-14	-1400	-14	1399	multi-exon	FALSE	canonical	3	16	junction_1	77.2190187680738	267	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCACTCTCCAGACAGTT	NA	False	NA	NA	False	NA	NA	NA	107112412	107133697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_107112700_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
88319	chr4	+	5655	2	Intergenic	novelGene_2025	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	997	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGAACTGTGCATATGAA	NA	False	NA	NA	False	NA	NA	NA	145986545	145992411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_145991045_145991255
88320	chr1	-	3806	4	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	0	-10	intron_retention	FALSE	canonical	3	119	junction_3	640.209861425663	12	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATCTCACGAGCTTTGG	2310	False	NA	NA	False	NA	NA	NA	93729656	93720307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497
88321	chrM	+	1245	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	371	-71	371	71	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	292	False	NA	9	True	NA	NA	NA	5698	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5700_6900
88322	chr2	-	4888	26	Antisense	novelGene_ENSMUSG00000099091.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.195959179422654	61	66	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGACTTCCGTCGTGGCG	5842	False	NA	NA	False	NA	NA	NA	162926602	162859391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162859452_162864292_162864418_162865267_162865358_162867250_162867380_162867806_162867882_162869948_162870022_162871652_162871780_162873098_162873190_162875153_162875222_162878476_162878634_162882546_162882634_162884609_162884720_162887122_162887295_162901418_162901513_162903441_162903514_162904379_162904467_162906196_162906419_162910073_162910234_162914541_162914834_162916300_162916722_162917552_162917736_162919704_162919807_162921511_162921627_162922636_162922742_162924468_162924618_162925080
88323	chr2	-	2418	1	Antisense	novelGene_ENSMUSG00000017760.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGCTCTCCAGGAGGCG	NA	False	NA	NA	False	NA	NA	NA	164678173	164675755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_164675800_164678200
88325	chr11	-	5415	5	Intergenic	novelGene_2285	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	162	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCAGGTCCACTACGATG	NA	False	NA	NA	False	NA	NA	NA	57451297	57433659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433907_57445797_57448898_57448960_57449607_57449781_57450383_57450476
88326	chr2	-	7503	13	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078869.3	novel	1581	4	NA	NA	-5519	190385	multi-exon	TRUE	non_canonical	0	0	junction_1	18.4044076846342	174	198	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTACAGAGAGAAACTTG	NA	False	NA	NA	False	NA	NA	NA	177021619	176766061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_176766151_176775444_176775501_176776033_176776160_176776365_176776428_176832002_176832970_176833134_176834582_176953180_176954493_176954707_176957112_177006992_177007703_177008856_177008918_177009124_177009252_177012912_177012965_177021529
88327	chr11	-	1856	1	Intergenic	novelGene_2493	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTACAAGTCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	105055576	105053720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_105053700_105055600
88328	chr2	-	4455	12	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	0	17787	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	225.19369073557	132	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAGCCCTTTAAGCGATC	NA	False	NA	NA	False	NA	NA	NA	121337146	121304604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121304661_121315912_121316013_121316273_121316320_121319191_121319344_121321836_121323360_121324011_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
88329	chr14	-	1081	5	FSM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	-21	-195	10	193	multi-exon	FALSE	canonical	3	14	junction_2	35.7587401903367	562	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGTTCATATATACTTG	NA	False	NA	NA	False	NA	NA	NA	76794319	76770060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_76770687_76777345_76777495_76787421_76787495_76793870_76793989_76794204
88330	chr1	+	3039	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	3	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	110.424453813456	2537	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTCACTGATAGCTGT	8322	False	NA	NA	False	NA	NA	NA	191307876	191353674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318689_191323920_191324022_191326540_191326586_191328284_191328485_191328998_191329122_191334417_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347940_191349923_191350023_191351707_191351894_191353276
88331	chrX	-	3390	11	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	337.539108845183	1	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256258	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243418_93246474_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
88332	chrX	+	13495	9	Intergenic	novelGene_3910	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4952	301	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCGTTTCTCGTTG	NA	False	NA	NA	False	NA	NA	NA	34409454	34780435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34414366_34427071_34427109_34588347_34588523_34588631_34588844_34589150_34589898_34589934_34591241_34591457_34592261_34740537_34745808_34780401
88333	chrX	-	2842	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	-4	10	-4	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921413	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
88334	chr4	-	8746	6	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	129	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATGGGCAACTGGAAAG	NA	False	NA	NA	False	NA	NA	NA	42231653	41858381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41858389_41877138_41877711_41878032_41880988_42207622_42207630_42226364_42231367_42231450
88335	chr15	-	4203	5	NNC	ENSMUSG00000039828.8	novel	1130	4	NA	NA	-10077	2855	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	184.472897738394	1573	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAGTTGTAAGATTATT	NA	False	NA	NA	False	NA	NA	NA	8138770	8118855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602_8128877_8138735
88336	chr5	-	4186	27	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	2	466	junction_5	100.698448422967	404	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8111	False	NA	NA	False	NA	NA	NA	100564090	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
88337	chr12	+	2942	2	Intergenic	novelGene_4432	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	69	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCACTCTGTAGACCAGG	NA	False	NA	NA	False	NA	NA	NA	86453858	86529179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_86453915_86526293
88338	chr17	-	2081	8	NIC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_7	60.1518486661814	635	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	NA	False	NA	NA	NA	26309256	26300203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26308937
88339	chrM	+	2605	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	12	-1035	12	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	5	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	9	True	NA	34	True	NA	NA	NA	1105	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
88340	chr8	-	8795	26	NNC	ENSMUSG00000039431.17	novel	2488	14	NA	NA	35	39294	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	141.680903441501	601	66	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCCGCCCCGCCTCCTGA	NA	False	NA	NA	False	NA	NA	NA	41087767	40964841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_40965273_40979965_40980043_40981358_40981474_40982149_40982251_40989910_40990136_40992349_40992420_40993717_40993848_40993929_40993987_40994063_40994133_40996848_40996995_40997984_40998062_40999313_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41075585_41075619_41087740
88341	chrUn_MU069435v1	+	575	1	Intergenic	novelGene_4742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGGTTTGTCTCTGCGG	NA	False	NA	NA	False	NA	NA	NA	0	575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
88342	chr2	-	591	1	FSM	ENSMUSG00000083716.5	ENSMUST00000120418.2	567	1	21	-45	21	45	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAATAGAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	36698383	36697792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_36697800_36698400
88344	chr16	-	2068	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	7	18	7	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGCCTAAAAAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	45975433	45973365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
88345	chr7	+	633	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	39	7	-2	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	5961	False	NA	NA	False	NA	NA	NA	45367533	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
88346	chr1	-	2761	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	20	-1539	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	847.316339740853	30	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATCTTTAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13730750	13695092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13696546_13696719_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
88347	chr8	-	434	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-6	21	-6	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	20	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108166217	108165783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
88348	chr11	+	2977	14	FSM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	-46	-190	3	159	multi-exon	FALSE	canonical	3	166	junction_5	30.3862706462472	203	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTTTTAAAAAAATGGTAA	NA	False	NA	NA	False	NA	NA	NA	29476410	29495438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
88349	chr7	-	5418	13	NNC	ENSMUSG00000025484.10	novel	769	7	NA	NA	-6074	-24	intron_retention	FALSE	non_canonical	0	0	junction_4	47.0723438502435	702	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGACGAGCTATGAAGTT	NA	False	NA	4	True	NA	NA	NA	140443564	140433330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140434537_140434677_140434735_140434986_140435079_140436133_140437466_140437755_140437804_140437892_140438484_140438773_140438867_140439350_140439500_140440786_140440884_140440983_140441130_140441207_140441352_140441750_140441870_140442220
88350	chr19	-	5018	16	NNC	ENSMUSG00000084957.4	novel	787	5	NA	NA	-22	26084	intron_retention	FALSE	non_canonical	0	0	junction_1	53.4203456871381	21	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGGGCTGCGGAGGAGG	NA	False	NA	NA	False	NA	NA	NA	53933080	53892207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_53892299_53895878_53895986_53897541_53897844_53899356_53899451_53901239_53901355_53908043_53908266_53909646_53909746_53910446_53910561_53914634_53914745_53914965_53915077_53915624_53915763_53917511_53919934_53920560_53921187_53921881_53922002_53931896_53932011_53932847
88351	chr15	-	4367	36	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	762	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGTTACTATAACACCCT	NA	False	NA	NA	False	NA	NA	NA	12935332	12824990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12825025_12826150_12826253_12827311_12827378_12833913_12833975_12834041_12834746_12837365_12837460_12842140_12842254_12842385_12842617_12846152_12846293_12848135_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865183_12866646_12866729_12867679_12867753_12878738_12878913_12881707_12881834_12883251_12883349_12885071_12885179_12889701_12889811_12890117_12890257_12890570_12890632_12901186_12901246_12902667_12902769_12905682_12905785_12907406_12907480_12912595_12912642_12913984_12914143_12915424_12915529_12924138_12924284_12926076_12926158_12926289_12926396_12928948_12929040_12929748_12929804_12935082
88352	chr16	-	4359	8	NNC	ENSMUSG00000005846.13	novel	1945	9	NA	NA	28	-72	intron_retention	FALSE	non_canonical	0	0	junction_3	1234.55514585751	7	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTATTTGCTGATGGTT	982	False	NA	NA	False	NA	NA	NA	11021167	11010905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_11011602_11012323_11012576_11014137_11016827_11017206_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
88353	chr5	+	2826	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-15	157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	257.98833227849	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCAGCCACAAAATTTTCA	NA	False	NA	NA	False	NA	NA	NA	33815456	33829702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826089_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
88354	chr6	+	1120	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-544	-111	544	mono-exon	FALSE	NA	NA	NA	NA	NA	48	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37782909	37784029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
88355	chr15	-	1811	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	3	7	3	-7	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGGCCCTGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	75952758	75942045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
88356	chr11	+	2560	13	ISM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	3479	-173	-3363	173	3prime_fragment	FALSE	canonical	3	166	junction_4	28.9395922569756	5	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	NA	False	NA	NA	NA	29479926	29495452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
88357	chr13	-	2722	22	NIC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-69	4	combination_of_known_junctions	FALSE	canonical	3	34	junction_21	282.175103642483	6	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCATGGTACTTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	6686755	6631213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6686561
88358	chr10	-	3968	4	FSM	ENSMUSG00000038876.13	ENSMUST00000214896.2	781	4	-3	-3184	-3	-22	multi-exon	FALSE	canonical	3	10	junction_3	95.3601360923712	541	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTTGCTTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	29238046	29220195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237979
88359	chr12	-	3295	2	Intergenic	novelGene_4317	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGTATTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	22046164	22040987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_22044151_22046032
88360	chr4	-	4110	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	281	3086	16	-2	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	5	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTAGTGTCTGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	148711195	148699924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
88361	chr2	+	10384	51	NNC	ENSMUSG00000003660.11	novel	6745	45	NA	NA	-19	7409	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_45	245.384811265897	1607	46	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACAAGCGGCGCGCGCA	NA	False	NA	NA	False	NA	NA	NA	127050286	127089780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127050459_127050893_127051058_127052613_127052786_127053519_127053713_127054268_127054325_127056726_127056826_127057968_127058122_127058273_127058374_127058532_127058670_127059148_127059233_127059311_127059486_127059792_127059931_127060272_127060429_127060948_127061120_127063664_127063859_127064050_127064175_127066500_127066651_127067002_127067114_127067925_127068058_127068214_127068404_127068864_127069063_127069796_127069950_127070064_127070146_127070461_127070546_127070978_127071086_127071405_127071525_127071805_127071961_127072053_127072244_127072433_127072608_127073606_127073768_127074325_127074554_127074820_127075013_127075099_127075279_127075419_127075572_127076883_127076993_127077879_127077989_127078378_127078569_127078659_127078825_127079380_127079503_127079742_127079887_127079978_127080156_127080419_127080581_127080658_127080741_127081798_127081892_127081988_127084956_127086830_127086923_127087644_127087845_127088332_127088424_127088523_127088634_127088929_127089074_127089394
88362	chr11	-	1871	6	ISM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	5103	4	1670	-4	3prime_fragment	FALSE	canonical	3	195	junction_4	30.1436560489931	4	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGGAGCTTGGAGGA	9506	False	NA	NA	False	NA	NA	NA	94539687	94535825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968
88363	chr1	+	4026	15	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGGAGGCCACGAAATCC	NA	False	NA	NA	False	NA	NA	NA	20871831	20887604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873878_20875039_20875132_20875486_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882397_20882786_20882918_20883182_20883338_20884621_20884731_20884911_20885147_20886866_20887003_20887465
88364	chr6	+	1120	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-544	-111	544	mono-exon	FALSE	NA	NA	NA	NA	NA	706	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37782909	37784029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
88365	chr17	+	1730	12	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-11	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	900.66844781671	14	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460769	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35462705_35462769_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
88367	chr8	+	1149	10	Antisense	novelGene_ENSMUSG00000004994.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCGGAAGCACACCCGGA	5027	False	NA	NA	False	NA	NA	NA	84985385	84997000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_84985558_84985743_84985883_84986923_84987096_84987171_84987313_84988366_84988427_84989618_84989678_84990490_84990576_84990939_84990991_84993463_84993703_84996969
88368	SIRV6	+	984	4	ISM	SIRV6A	SIRV610	1163	5	299	0	-252	0	3prime_fragment	FALSE	canonical	3	18415	junction_2	1102.24709873361	37	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGGGTTTGCC	NA	False	NA	NA	False	NA	NA	NA	2771	11690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV6_+_2829_3106_3165_10724_11109_11205
88369	chr8	-	5063	14	FSM	ENSMUSG00000039431.17	ENSMUST00000048898.17	2488	14	10	-2585	-7	2579	multi-exon	FALSE	canonical	3	263	junction_13	15.5985130530912	615	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTCATTTAATCTGAAGT	NA	False	NA	NA	False	NA	NA	NA	41087809	41001556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41087740
88370	chr2	+	910	5	Fusion	ENSMUSG00000078898.10_ENSMUSG00000094475.8	novel	1497	4	NA	NA	-294707	-719	multi-exon	FALSE	non_canonical	0	0	junction_1	0	936	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACATAAACGAACACATACA	NA	False	NA	NA	False	NA	NA	NA	174919521	175444934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174919909_175222239_175222367_175320124_175320186_175444347_175444656_175444907
88371	chr5	+	737	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	142	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6624.55618437945	9	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121343613	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345217_121346453_121346639_121346844
88372	chr2	-	1943	9	NNC	ENSMUSG00000039715.9	novel	1814	9	NA	NA	11	84998	intron_retention	TRUE	non_canonical	0	0	junction_1	59.5881699668651	5	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGTGTCCACC	NA	False	NA	NA	False	NA	NA	NA	29938862	29836559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_29836731_29921739_29921985_29922084_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
88373	chr10	+	2686	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	229	7	142	-7	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	1955	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAAGTGTCATATTTTG	NA	False	NA	NA	False	NA	NA	NA	41395638	41407037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
88374	chr4	+	1699	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	289	39	1	-33	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	24	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTACATGCAAAAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	150321697	150333297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
88375	chr14	-	4122	9	NNC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-3	2266	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	101.806188417011	25	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGAGAATTAGCTTCAAT	NA	False	NA	NA	False	NA	NA	NA	21102266	21083815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095780_21102207
88376	chr4	+	4785	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	4	-2408	0	2311	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	473	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTCCCTTCATGGACTAC	NA	False	NA	NA	False	NA	NA	NA	122730038	122755279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
88377	chr1	-	569	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	353	-31	353	31	mono-exon	FALSE	NA	NA	NA	NA	NA	154	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837052	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837100
88378	chr19	+	954	3	FSM	ENSMUSG00000024661.8	ENSMUST00000237465.2	592	3	-19	-343	0	-6	multi-exon	FALSE	canonical	3	5325	junction_2	249.5	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCAGCTTCTTTTCTTT	4927	False	NA	NA	False	NA	NA	NA	9960067	9962450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923
88379	chr4	-	595	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	18	220	18	-4	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	48	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTACAGTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	135780686	135777261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
88380	chr2	-	3510	6	NNC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	96	-28	intron_retention	FALSE	canonical	1	3	junction_3	13.8188277360998	5	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAATGTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166349895	166341988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166344399_166345246_166345340_166347371_166347507_166347924_166348119_166348706_166348871_166349381
88381	chr2	+	2965	2	NNC	ENSMUSG00000074578.15	novel	731	2	NA	NA	1	531	intron_retention	FALSE	canonical	0	0	junction_1	0	824	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAATTCATTACACAATCT	NA	False	NA	NA	False	NA	NA	NA	166905141	166908313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166906362_166906568
88382	chr1	+	1657	5	NIC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	15	1	intron_retention	FALSE	canonical	3	2982	junction_1	216.961258062355	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCTCTTCATTTTGCT	NA	False	NA	NA	False	NA	NA	NA	63215998	63218816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_63216451_63216912_63217725_63217990_63218058_63218406_63218533_63218616
88383	chr1	-	3210	7	FSM	ENSMUSG00000026189.14	ENSMUST00000097698.5	932	7	-45	-2233	9	2233	multi-exon	FALSE	canonical	1	1	junction_1	105.091494528445	14	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAACCATTGCTTTGAGC	NA	False	NA	NA	False	NA	NA	NA	72323463	72303921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_72306330_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
88384	chr16	-	2600	2	FSM	ENSMUSG00000097768.3	ENSMUST00000180967.3	1580	2	-164	-856	-164	856	multi-exon	FALSE	canonical	3	7	junction_1	0	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTTAGTTCACATAAGC	6407	False	NA	NA	False	NA	NA	NA	93591953	93588167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_93590271_93591456
88385	chr15	-	3220	2	Antisense	novelGene_ENSMUSG00000037386.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	1224	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCAAGGTAGTAGAACCC	2125	False	NA	NA	False	NA	NA	NA	39110545	39105240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_39106174_39108258
88386	chr10	-	1326	2	FSM	ENSMUSG00000034792.9	ENSMUST00000147908.2	1046	2	0	-280	0	280	multi-exon	FALSE	canonical	3	76	junction_1	0	434	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGGGTATAGAGCTGAGT	6420	False	NA	NA	False	NA	NA	NA	81344007	81337859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81338940_81343761
88387	chrX	+	4386	16	NNC	ENSMUSG00000000787.13	novel	4692	17	NA	NA	40	-69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.783756043865	1	97	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTCTCCTTTGTTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	13147310	13160222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_13147367_13152201_13152410_13153486_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155184_13155637_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651_13157927_13157977
88388	chr4	-	2315	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	-37	0	5	0	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	1485	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5444	False	NA	NA	False	NA	NA	NA	132073053	132059233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
88389	chr17	+	1215	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	42	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	16	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATAGCTGAATTTTGTT	3078	False	NA	NA	False	NA	NA	NA	35816956	35821664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821280_35821379
88391	chr7	-	1597	2	NIC	ENSMUSG00000050708.17	novel	943	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	74401	junction_1	0	164	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109263	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45108655_45108953
88392	chr17	-	2171	1	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	184	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTCTGGTTCTGCTCCT	8103	False	NA	NA	False	NA	NA	NA	29253871	29251700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29251700_29253900
88393	chr1	-	1411	7	FSM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	-57	9	0	-6	multi-exon	FALSE	canonical	3	14	junction_6	68.4505092911822	532	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCACATGTGAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	58484645	58470161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
88394	chr11	-	1280	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	130	223	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	16	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113076	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
88395	chr7	+	1862	8	FSM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	-54	-2	-26	2	multi-exon	FALSE	canonical	3	49	junction_7	33.4310133418242	117	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTTTTCAATTCT	NA	False	NA	NA	False	NA	NA	NA	28416202	28437565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
88396	chr15	+	3496	14	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	240.761661222864	4	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTAATGTTGCAGTTT	NA	False	NA	-60	True	NA	NA	NA	101982332	102005606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992698_101994444_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
88397	chr10	+	857	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	28	0	28	0	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	93	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4940	False	NA	NA	False	NA	NA	NA	127871471	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
88398	chr12	-	11213	29	Fusion	ENSMUSG00000112022.3_ENSMUSG00000062198.6	novel	850	8	NA	NA	-27	-2	intron_retention	FALSE	non_canonical	0	0	junction_7	85.2184168559154	816	124	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATCTGAAATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	55201708	55092462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_55092729_55095671_55095763_55100085_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765_55127521_55135953_55136063_55136918_55137013_55138033_55138117_55142597_55142703_55143891_55143959_55144038_55144097_55146695_55146849_55148124_55148274_55148607_55148708_55149251_55149339_55151974_55152049_55152400_55152509_55155284_55155456_55157868_55157966_55185559_55189069_55190157_55190218_55192016_55192155_55195887_55196025_55196405_55196482_55196565_55196622_55197660_55197794_55201606
88399	chr4	+	3251	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33227	-1720	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	287.112800132631	566	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTACGGAATCTTAATA	NA	False	NA	NA	False	NA	NA	NA	146500252	146553029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500588_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
88400	chr5	-	2617	3	NNC	ENSMUSG00000105987.5	novel	503	3	NA	NA	-27718	-129	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTACAACTGGAAAACCAACT	NA	False	NA	NA	False	NA	NA	NA	23945383	23903422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_23905462_23915351_23915723_23945176
88401	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	169	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
88402	chr14	-	2687	15	ISM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	-30	-13	-4	13	intron_retention	FALSE	canonical	3	306	junction_11	89.9013064307699	23	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959663	55953320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300
88403	chr6	-	2516	12	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	243	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	1525.29289965962	54	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	NA	False	NA	NA	False	NA	NA	NA	144994093	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144993165_144993381_144994049
88404	chr4	-	2354	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	29	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.152774954745	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTGAGGCCAGAGC	NA	False	NA	NA	False	NA	NA	NA	137523666	137469058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469338_137469461_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
88405	chrX	-	2413	5	NNC	ENSMUSG00000040749.12	novel	803	4	NA	NA	3	737	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.247274514513	185	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATTATCTGGCAATTAA	NA	False	NA	NA	False	NA	NA	NA	162859486	162852963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_162853276_162853579_162855224_162856285_162856347_162858573_162858666_162859182
88406	chr13	-	7904	21	NNC	ENSMUSG00000021713.10	novel	2342	11	NA	NA	0	26347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.494047877933	1081	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATAGATGGCGAGCCGTTC	NA	False	NA	NA	False	NA	NA	NA	104365351	104315284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104315468_104317579_104317741_104321229_104321354_104323906_104324185_104324566_104324750_104326168_104326385_104328522_104328658_104334495_104334626_104335099_104335211_104336574_104336700_104337736_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
88407	chr11	+	7567	41	NIC	ENSMUSG00000020850.15	novel	7442	42	NA	NA	-15	-1	intron_retention	FALSE	canonical	3	217	junction_5	157.249115657291	1346	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTGTTTTCTTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	75377626	75400272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_75378018_75378450_75378620_75380567_75380733_75380823_75381043_75381154_75381368_75381466_75381593_75381672_75381779_75382268_75382460_75382584_75382705_75382787_75383209_75383322_75383458_75383804_75383935_75384176_75384374_75384639_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
88408	chr17	+	1452	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-5	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	712.597930112065	6	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460775	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462299_35463192_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
88409	chr3	-	5993	3	Intergenic	novelGene_3118	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	245	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTCATAAGGGAAATTG	1466	False	NA	NA	False	NA	NA	NA	45308413	45065085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_45066327_45221058_45222708_45305310
88411	chr7	+	2304	9	FSM	ENSMUSG00000059851.16	ENSMUST00000098853.9	2189	9	-115	0	-115	0	multi-exon	FALSE	canonical	3	38	junction_1	214.33585648463	7	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	468	False	NA	NA	False	NA	NA	NA	4742998	4750513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4743181_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
88412	chr4	+	2221	2	FSM	ENSMUSG00000084987.2	ENSMUST00000144347.2	387	2	106	-1940	-12	1940	multi-exon	FALSE	canonical	2	6	junction_1	0	920	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAACAAACAAATAAA	3032	False	NA	NA	False	NA	NA	NA	154685759	154690599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_154685865_154688483
88413	chr4	-	2866	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	-18	-254	-18	254	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	1131	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAGTGTTTAGCATTA	NA	False	NA	NA	False	NA	NA	NA	147726988	147696139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
88414	chr13	+	14527	7	Intergenic	novelGene_1326	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	160	209	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGCGACACTAGTTATG	NA	False	NA	NA	False	NA	NA	NA	22996906	23514002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_22997102_23154457_23155969_23156243_23157538_23354330_23361245_23508863_23510238_23510645_23512271_23512388
88415	chr17	+	383	4	FSM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	3	-3	3	3	multi-exon	FALSE	canonical	3	5436	junction_1	2487.77200634535	15	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATGTGTGAGCT	NA	False	NA	NA	False	NA	NA	NA	56920418	56921246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56920449_56920585_56920681_56920906_56921042_56921123
88416	chrM	+	559	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	819	0	819	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	381	False	NA	-59	True	NA	NA	NA	10985	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11000_11500
88417	chr14	-	2449	6	Antisense	novelGene_ENSMUSG00000016831.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAAGTGAATTGGTAG	NA	False	NA	NA	False	NA	NA	NA	52531969	52524422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_52524445_52524755_52524987_52528215_52528297_52528929_52529674_52529974_52530149_52530772
88418	chr11	-	4354	25	NNC	ENSMUSG00000025155.16	novel	1930	14	NA	NA	0	4926	intron_retention	FALSE	non_canonical	0	0	junction_1	437.399726604091	3199	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGGCGCGTCCGTCAGT	NA	False	NA	NA	False	NA	NA	NA	120687215	120675100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120675162_120675939_120676037_120676522_120676701_120677120_120677291_120677375_120677519_120677600_120677674_120677832_120677890_120678199_120678290_120678520_120678615_120678698_120678806_120678885_120678969_120679069_120679206_120679285_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302
88419	chr15	-	3652	13	FSM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	90	-1846	77	-1	multi-exon	FALSE	canonical	3	743	junction_12	159.721024150096	518	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAGCCTCATTTGTATATA	NA	False	NA	NA	False	NA	NA	NA	63932102	63800946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
88420	chr11	+	4203	23	NIC	ENSMUSG00000020456.18	novel	4114	23	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	147.405951246244	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	216	False	NA	NA	False	NA	NA	NA	6242577	6306642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6242715_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
88421	chr11	-	1314	6	NNC	ENSMUSG00000078812.11	novel	1409	6	NA	NA	-246	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_5	8473.22444881522	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9695	False	NA	NA	False	NA	NA	NA	69812458	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69812263
88422	chr3	+	5153	8	NIC	ENSMUSG00000027804.14	novel	3777	9	NA	NA	54	161	intron_retention	FALSE	canonical	3	2177	junction_3	244.828803160786	12	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTTTATTTATGACAAA	NA	False	NA	NA	False	NA	NA	NA	79498725	79511118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_79498865_79500916_79501058_79502508_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
88423	chr4	+	6360	8	Intergenic	novelGene_2049	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	42.3411798395378	5	145	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	2312	False	NA	NA	False	NA	NA	NA	146289370	146395018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289519_146312913_146312972_146385326_146386034_146386735_146388198_146388409_146388614_146390758_146391475_146391643_146394413_146394722
88424	chr4	-	2872	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9764	2110	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	162	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTTTATTTTAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	101828482	101822539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_101824980_101825125_101825438_101828362
88425	chr13	+	5086	2	Intergenic	novelGene_1547	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113855126	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113855418_113855583
88426	chr7	+	1489	5	ISM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	16140	-6	472	0	3prime_fragment	FALSE	canonical	3	49	junction_4	39.6169155790806	871	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28432396	28437569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
88427	chrM	-	2356	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTTTGGTTTCGGGGTTT	1	True	NA	7	True	NA	NA	NA	3702	1346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1300_3700
88428	chr9	+	830	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	763	6	-199	-6	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTCTTATGGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	119957672	119960619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
88429	chr8	-	4095	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	-54	-2269	-54	2265	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	10701	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTATGTCTGAGCACCA	NA	False	NA	NA	False	NA	NA	NA	43760071	43745834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
88430	chr15	-	1726	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	43	84	-21	-84	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	20065	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601907	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
88431	chr4	-	3283	12	Antisense	novelGene_ENSMUSG00000029063.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	36	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGCGCAAGCGCAGCC	NA	False	NA	NA	False	NA	NA	NA	155675443	155648277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_155648431_155661180_155661653_155663765_155663852_155668593_155668722_155669606_155669716_155669818_155669905_155671183_155671288_155671812_155671956_155672143_155672241_155672316_155672470_155673058_155673147_155673779
88432	chrM	-	805	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGGCAAGGTGTCTTAAG	5379	False	NA	NA	False	NA	NA	NA	1023	218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1000
88433	chrX	+	9739	3	Antisense	novelGene_ENSMUSG00002076267.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	138	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAACAACGCCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	29454055	29808591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_29458512_29458839_29459156_29803624
88434	chr2	+	5174	13	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-107	-6	intron_retention	FALSE	canonical	3	97	junction_1	839.653648833851	17	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTAGTGTCTGACTCCTC	NA	False	NA	NA	False	NA	NA	NA	162896499	162926602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896724_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
88435	chr7	-	2670	3	Antisense	novelGene_ENSMUSG00000050917.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	817	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCTTTTGAGGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	144418977	144415479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_144415569_144415967_144416072_144416500
88436	chr18	-	889	1	FSM	ENSMUSG00000091957.4	ENSMUST00000076842.7	879	1	32	-42	32	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	7466	False	NA	NA	False	NA	NA	NA	61393000	61392111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393000
88437	chr2	-	2455	15	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	-1606	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	109.937389417053	505	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCATTTCCTGTCCTGAT	1500	False	NA	NA	False	NA	NA	NA	155987712	155965574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970353_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939_155986199_155986376_155986505_155987516
88438	chr8	+	3172	4	ISM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	12042	-1245	-1978	1245	intron_retention	FALSE	canonical	3	2592	junction_2	141.148463997625	983	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAACCCCCATAGGGCAC	NA	False	NA	NA	False	NA	NA	NA	13221202	13226583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_13221384_13222540_13222661_13223626_13223694_13223779
88439	chr2	+	2073	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	-516	3	-516	-3	multi-exon	FALSE	canonical	3	170	junction_3	17.1075032271418	537	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCACCCAGAAGTCGGACT	NA	False	NA	NA	False	NA	NA	NA	84628655	84640517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
88440	chr2	-	2511	7	NNC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	69	-28	intron_retention	FALSE	canonical	0	0	junction_4	14.7384606462894	3	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAATGTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166349922	166341988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166343270_166344290_166344399_166345246_166345340_166347371_166347507_166347929_166348119_166348706_166348871_166349381
88441	chr7	-	1345	3	NIC	ENSMUSG00000050708.17	novel	968	4	NA	NA	1	0	intron_retention	FALSE	canonical	3	56898	junction_1	8751.5	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109262	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45107708_45107958_45108655_45108953
88442	chr2	+	4060	19	Antisense	novelGene_ENSMUSG00000027184.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	831	8	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGGCGCGGGAGGGACTT	NA	False	NA	NA	False	NA	NA	NA	103595357	103627954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103597207_103598748_103598814_103599146_103599248_103599778_103599975_103602041_103602195_103603014_103603163_103603317_103603428_103604076_103604141_103605761_103605870_103605953_103606109_103606276_103606366_103606449_103606508_103608310_103608446_103609508_103609590_103609675_103609917_103613300_103613391_103613490_103613550_103627074_103627286_103627807
88443	chr11	+	4322	26	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	-373	665	at_least_one_novel_splicesite	FALSE	canonical	2	23	junction_1	455.037053436311	4	46	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACGAAAACAAAACTCTGG	NA	False	NA	NA	False	NA	NA	NA	23205667	23246898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23205868_23206608_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
88444	chr17	-	3206	13	NNC	ENSMUSG00000073436.12	novel	1521	8	NA	NA	4	1850	intron_retention	TRUE	non_canonical	0	0	junction_1	16.6355960384819	460	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGTCTCGCGAGACAGG	1900	False	NA	NA	False	NA	NA	NA	25114025	25105609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25105732_25106750_25106889_25109253_25109433_25109539_25109728_25109804_25109907_25109981_25110109_25110331_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
88445	chr16	-	9923	28	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-7	28324	intron_retention	FALSE	non_canonical	0	0	junction_1	2444.70931393277	32	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACCCTCCCGGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	87292768	87251889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255629_87258850_87259026_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87270072_87271467_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87290675_87291224_87291316_87292616
88446	chr2	+	1174	2	Genic_Genomic	ENSMUSG00000082064.4	novel	891	1	NA	NA	-44	1119	multi-exon	FALSE	non_canonical	0	0	junction_1	0	958	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGCTGGAGCCAGCGGGG	9372	False	NA	NA	False	NA	NA	NA	154545684	154547738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_154546659_154547538
88447	chr4	+	5103	5	NNC	ENSMUSG00000039693.12	novel	1378	3	NA	NA	-55	3534	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	122.26278051803	481	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCAAACCCCATCCCCAC	107	False	NA	NA	False	NA	NA	NA	48540023	48565453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_48540272_48552379_48552831_48560843_48562218_48562352_48564473_48564543
88448	chr2	+	5605	7	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	-108970	62310	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.36841497999	47	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCTTTACCACATTGG	NA	False	NA	NA	False	NA	NA	NA	177292110	177474575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177292231_177410168_177410230_177411379_177411502_177411669_177412610_177418732_177419007_177467159_177467340_177470667
88449	chr1	+	3824	24	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	454.418850283946	1	104	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3135	False	NA	NA	False	NA	NA	NA	180396481	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014_180428588_180428648
88450	chr2	-	1706	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	46	500	46	-500	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGACGATGGTGGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	152174527	152158753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
88451	chr1	-	2664	13	NNC	ENSMUSG00000039630.11	novel	7640	14	NA	NA	8	3293	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2210.18023869095	2	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATCCAGTTGTCTAATG	NA	False	NA	NA	False	NA	NA	NA	178163962	178156137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158716_178158940_178159043_178159399_178159520_178159657_178159922_178160561_178160669_178161107_178161212_178161451_178161592_178163446_178163521_178163611
88452	chr11	-	3699	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	114	0	114	0	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	517	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACAGTATGTGGATTTTT	8641	False	NA	NA	False	NA	NA	NA	86698458	86659671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
88453	chrM	+	2612	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1030	0	1030	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATATGTCTGATAAAAG	-3	True	NA	22	True	NA	NA	NA	1093	3705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
88454	chr2	-	2505	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	292	-1600	6	1600	multi-exon	FALSE	canonical	3	201	junction_2	6.37867541108654	978	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACCAGAAATTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	105833602	105795453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
88455	chr17	+	2962	13	FSM	ENSMUSG00000091586.3	ENSMUST00000165999.2	1693	13	-5	-1264	-5	15	multi-exon	FALSE	canonical	2	14	junction_12	8.54725426997206	1397	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAATTACTTAGGAGCA	NA	False	NA	NA	False	NA	NA	NA	32725430	32749132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_32725553_32725867_32726067_32736867_32737013_32739336_32739391_32739476_32739605_32741091_32741214_32742975_32743247_32743552_32743620_32743808_32743939_32746814_32746949_32747020_32747086_32747249_32747333_32747690
88456	chr17	-	1158	7	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	2378.42408726637	97	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTTCTTTATCTGGA	NA	False	NA	NA	False	NA	NA	NA	15718557	15695978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15713889_15713989_15714677_15714786_15718414
88457	chr10	-	7243	9	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	22504	846	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	38.9262122483038	14	87	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGTTAACCTCAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	62678579	62647554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649192_62649356_62649604_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954
88458	chr16	+	4783	28	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	-8	1921	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	346.731012546799	1716	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATAAAAAGTTGTATCTC	NA	False	NA	NA	False	NA	NA	NA	48251591	48453184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
88459	chr6	+	3498	8	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	13	2116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2262.72684509426	5	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTGCAAGTGGAGTGTAA	5912	False	NA	NA	False	NA	NA	NA	67244034	67263411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244199_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
88460	chr12	+	3163	7	NIC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	-24	-603	intron_retention	FALSE	canonical	3	28	junction_2	73.0032343271325	9	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAATGGCGGAACGCTTGA	NA	False	NA	NA	False	NA	NA	NA	113120016	113129065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_113120192_113120294_113120374_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
88461	chr11	-	1606	9	NIC	ENSMUSG00000042709.16	novel	719	8	NA	NA	-1	-9	combination_of_known_junctions	FALSE	canonical	3	37	junction_8	131.387249666777	142	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCTTTTAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	60307863	60291472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307811
88462	chrM	+	2211	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064340.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	-264	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCTAATAAACGCCCTAAC	-3	True	NA	22	True	NA	NA	NA	1093	3443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2718_2856
88464	chr11	-	2785	1	Intergenic	novelGene_2497	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAGTTTTACTATA	NA	False	NA	NA	False	NA	NA	NA	107349597	107346812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_107346800_107349600
88465	chr6	-	1213	1	Antisense	novelGene_ENSMUSG00000046679.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	171	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTTTGCCTGCAGAAAAA	2608	False	NA	NA	False	NA	NA	NA	86436019	86434806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_86434800_86436000
88466	chr1	-	1467	10	FSM	ENSMUSG00000026171.13	ENSMUST00000027357.12	1479	10	8	4	5	1	multi-exon	FALSE	canonical	3	94	junction_3	8.63384096891663	476	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTATGTGGTATGAC	NA	False	NA	NA	False	NA	NA	NA	74640548	74632910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
88467	chr2	-	1754	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	39	2	-32	-2	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	251	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
88468	chr8	-	533	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	-111	-80	-111	80	mono-exon	FALSE	NA	NA	NA	NA	NA	298	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACAAGCCAGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	107300093	107299560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107299600_107300100
88469	chr3	-	1084	7	ISM	ENSMUSG00000000563.18	ENSMUST00000118209.8	1604	8	878	9	25	-5	3prime_fragment	FALSE	canonical	3	4041	junction_4	350.10446853602	63	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACAGAATTTATAAGTTT	NA	False	NA	NA	False	NA	NA	NA	105866537	105850022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_105850380_105851002_105851183_105858906_105859033_105861333_105861498_105863211_105863358_105866177_105866215_105866463
88471	chr17	-	1545	6	NIC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-19	215	intron_retention	FALSE	canonical	3	390	junction_2	29.3162071216588	223	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAGGCATGCACCAG	NA	False	NA	NA	False	NA	NA	NA	46985232	46978168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983518_46983631_46983774_46985122
88472	chr2	+	8550	36	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2186	-3509	2186	3509	3prime_fragment	FALSE	canonical	3	459	junction_11	64.3521941969284	671	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGGCTTCGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	90509744	90570181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
88473	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
88474	chr4	+	3526	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	50	-590	-29	590	multi-exon	FALSE	canonical	3	141	junction_4	16.5753974809925	127	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGTAAGTACTTGCT	-15	True	NA	NA	False	NA	NA	NA	45018632	45034282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
88475	chr8	-	4140	14	NNC	ENSMUSG00000038542.15	novel	2860	14	NA	NA	-19	1260	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	84.1979915149282	855	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTACAGTGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	13155478	13125928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145876_13147604_13147669_13148562_13148637_13150324_13150415_13154774
88476	chr2	-	2537	13	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	56	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	198.700972289742	63	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGTTGTGTTTAATTTA	NA	False	NA	NA	False	NA	NA	NA	165740880	165669043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165726527_165726759_165740835
88477	chr13	-	3903	15	NIC	ENSMUSG00000034617.8	novel	3692	15	NA	NA	26	2	combination_of_known_junctions	FALSE	canonical	3	42	junction_14	91.4475705706024	390	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGGTGAGGCTTTGTGGC	NA	False	NA	NA	False	NA	NA	NA	68730187	68708896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68729921
88478	SIRV3	-	2537	5	NNC	SIRV3C	novel	796	3	NA	NA	0	2394	intron_retention	FALSE	non_canonical	0	0	junction_1	705.090774297891	21	67	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTCAGTCCAAAACTTTGA	NA	False	NA	NA	False	NA	NA	NA	9943	6365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_-_7989_8131_8208_8755_8976_9189_9299_9434
88479	chr13	-	3235	15	NNC	ENSMUSG00000034617.8	novel	3861	15	NA	NA	26	82	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_14	100.262130926682	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGCTATTGTGTGCGT	NA	False	NA	NA	False	NA	NA	NA	68730187	68709399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730086
88480	chr11	+	4657	26	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	-98	-588	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.823200808329	117	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTCCCTTCACTGAC	NA	False	NA	NA	False	NA	NA	NA	23205942	23247009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206167_23206408_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
88481	chr15	+	5114	18	NNC	ENSMUSG00000022463.9	novel	5077	19	NA	NA	91	-835	intron_retention	FALSE	non_canonical	0	0	junction_8	257.815054013773	18	162	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTAGAGGGTACCTCGG	2334	False	NA	NA	False	NA	NA	NA	82031542	82087185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063115_82063576_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081821_82081988_82083835_82084022_82085183
88482	chr5	+	1889	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	244	3	-59	0	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	778	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCGGTGTGCCGACTATT	NA	False	NA	NA	False	NA	NA	NA	114269230	114277379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
88483	chr15	+	1185	7	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	36320	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	4309.86846924848	277	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAGAATA	NA	False	NA	NA	False	NA	NA	NA	76788284	76826834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790555_76826533
88484	chr16	+	5306	3	Antisense	novelGene_ENSMUSG00000059920.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	600	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACCGGAAGTGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	64582498	64591308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_64587359_64589288_64589526_64591099
88485	chr14	+	2251	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	578.24940873141	154	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCTCAGACTCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271138	30295578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30289942_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
88486	chr5	+	2093	4	FSM	ENSMUSG00000097145.6	ENSMUST00000180601.6	2120	4	8	19	8	-19	multi-exon	FALSE	canonical	0	0	junction_2	7.93025150224688	11515	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTGAAAAACTGGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	52348028	52355307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_52348280_52350259_52350939_52352142_52352233_52354234
88487	chr10	-	6466	13	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	37	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	64.7153489435767	123	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTTATCACACCAAATTC	NA	False	NA	NA	False	NA	NA	NA	62728728	62648428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62649228_62649302_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62728473
88488	chr17	-	2183	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	-40	23	21	-23	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	677	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCTTTTTTAAAAATTCA	3297	False	NA	NA	False	NA	NA	NA	24439804	24434050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
88489	chr3	+	3802	21	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	89	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	4965.7784311727	7	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTACTGATTTTTGAGACA	NA	False	NA	NA	False	NA	NA	NA	102927830	102965479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201_102964542_102964945
88490	chr17	+	1211	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	25	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1751.13484632109	2	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3061	False	NA	NA	False	NA	NA	NA	35816939	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821059_35821325
88491	chr11	+	2590	1	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	50381	0	17832	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2587	36	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGTCTCCCATCT	NA	False	NA	-70	True	NA	NA	NA	57950270	57952860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57950300_57952900
88492	chr17	+	1217	1	Intergenic	novelGene_173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1310	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGGTAGGCAACGGTG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155100
88493	chr5	+	1494	5	Intergenic	novelGene_877	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAGACAGGGTTTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	142888877	142954661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891023_142954638
88494	chr3	-	439	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	43	-2	-8	2	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	28	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTACGCTTCCGTTATCTGT	NA	False	NA	NA	False	NA	NA	NA	130524004	130520485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
88495	chr2	+	826	1	FSM	ENSMUSG00000082895.2	ENSMUST00000120702.2	885	1	-78	137	-78	-137	mono-exon	FALSE	NA	NA	NA	NA	NA	13	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGCAGGTTCCCTCGG	NA	False	NA	NA	False	NA	NA	NA	28367099	28367925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28367100_28367900
88496	chr10	-	1937	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	26	-4	-25	4	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	31	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTGATCTGTATAT	NA	False	NA	NA	False	NA	NA	NA	116899693	116886901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
88497	chr9	+	2795	9	Fusion	ENSMUSG00000032185.16_ENSMUSG00000048429.11	novel	3585	14	NA	NA	476	99	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCTGAGCCTACCTAAGC	7805	False	NA	NA	False	NA	NA	NA	21499174	21504018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_21500854_21500929_21501057_21501141_21501330_21501411_21501574_21501651_21501768_21502721_21502809_21503193_21503277_21503356_21503515_21503823
88498	chrX	-	6436	13	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-11554	303	intron_retention	FALSE	non_canonical	0	0	junction_8	195.719328518048	146	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	72172862	72151711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72161360_72166214_72166320_72166671_72166740_72167032_72167130_72168421_72168588_72170422
88499	chr5	-	4577	15	Antisense	novelGene_ENSMUSG00000051950.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	523	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCTGCGCCCTCTGGCGGC	NA	False	NA	NA	False	NA	NA	NA	149686064	149601694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_149601844_149619888_149619938_149626741_149626781_149632781_149632892_149648872_149648953_149650218_149650329_149653386_149653526_149656137_149656200_149658832_149658969_149663003_149663067_149668890_149669004_149669968_149670066_149673891_149674015_149677528_149677672_149682900
88500	chr9	-	595	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	18	6	18	-6	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAATGTGCGTCGTCATT	NA	False	NA	NA	False	NA	NA	NA	78275441	78274339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
88501	chr11	-	2029	3	NIC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	54	0	intron_retention	FALSE	canonical	3	1704	junction_2	277	89	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1901	False	NA	NA	False	NA	NA	NA	59119042	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59103522_59103646_59104350_59118998
88502	chr5	+	341	1	Intergenic	novelGene_911	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCATGCCGGTGGTCCC	NA	False	NA	NA	False	NA	NA	NA	146197788	146198129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
88503	chr16	+	1817	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	2	44	junction_3	606.092278452712	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927943_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
88504	chr3	+	488	1	Intergenic	novelGene_3071	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGATGCAGAAAAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	5925398	5925886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925900
88505	chr5	+	5199	21	FSM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	46	-4	7	4	multi-exon	FALSE	canonical	3	795	junction_9	132.566766197264	1527	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	773	False	NA	NA	False	NA	NA	NA	75735621	75817386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
88506	chr3	+	1892	12	Antisense	novelGene_ENSMUSG00000053398.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	164	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTTTGATTGGTCAGAAA	NA	False	NA	NA	False	NA	NA	NA	98220485	98247295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_98220773_98221482_98221724_98222382_98222511_98223720_98223853_98226933_98227088_98227960_98228110_98228527_98228662_98235362_98235462_98235604_98235662_98240542_98240617_98241822_98241974_98247009
88507	chr10	+	998	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	52	103	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	59	9	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAAAAAATGCAGTTTTG	NA	False	NA	NA	False	NA	NA	NA	95729356	95733222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95729523_95729968_95730152_95732573
88508	chr11	+	1247	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	38	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGACGCGGGCTCTCCG	NA	False	NA	NA	False	NA	NA	NA	33102509	33113075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33104060_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33110001_33110343_33110439_33111038_33111228_33111548_33111630_33112922
88509	chrX	+	5579	1	Intergenic	novelGene_3939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	269	91	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGATATATTTTGACCAC	NA	False	NA	NA	False	NA	NA	NA	63976708	63982287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63976700_63982300
88510	chr3	-	189	1	Intergenic	novelGene_3175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCCACCTAAGGTCCAC	NA	False	NA	NA	False	NA	NA	NA	107254821	107254632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_107254600_107254800
88511	chr1	+	1598	3	NIC	ENSMUSG00000026238.15	novel	768	4	NA	NA	-5	-12	intron_retention	FALSE	canonical	3	20695	junction_1	1693	110	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454442	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_86454673_86456894_86457527_86457686
88512	chr4	+	2368	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14350	774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	40.1769523483303	94	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145158959	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145173065_145173196_145173287_145173342_145176036_145176245_145176328
88513	chr15	+	2036	13	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	-3	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	396.162100310242	250	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAACAAAAAGAATGTACA	NA	False	NA	NA	False	NA	NA	NA	80832701	80853324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848087_80848409_80850306_80850384_80851312_80851403_80851789_80851967_80852862
88514	chr8	+	1990	7	Fusion	ENSMUSG00000069862.7_ENSMUSG00000015016.9	novel	1798	5	NA	NA	15557	47	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	75	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGTGCCTACATTTCAGC	NA	False	NA	NA	False	NA	NA	NA	123517873	123933807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_123517884_123549534_123549697_123568131_123568951_123570659_123570701_123785964_123786127_123889364_123889449_123933095
88515	chr12	+	4433	21	FSM	ENSMUSG00000021111.16	ENSMUST00000170002.8	2605	21	-169	-1659	-1	-7	multi-exon	FALSE	canonical	3	84	junction_19	453.97952597006	1217	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGCACAAATCCCATAG	NA	False	NA	NA	False	NA	NA	NA	105750961	105805191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105800968_105801044_105803023
88516	chr11	+	2572	2	Intergenic	novelGene_2318	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTAGCCTGAGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	57445632	57451297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57447740_57450832
88517	chr5	-	2353	13	Antisense	novelGene_ENSMUSG00000032754.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	101	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCGGAGCAGCCTGGCCA	NA	False	NA	NA	False	NA	NA	NA	120671928	120649265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_120649343_120651177_120651398_120657694_120657844_120657927_120657984_120658667_120658723_120658842_120658962_120659051_120659197_120659823_120659925_120665803_120665926_120667572_120667727_120668378_120668462_120669145_120669212_120670922
88518	chr13	-	2379	16	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2486.8878239456	12	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGTGTGCCCAATTTGAA	4768	False	NA	NA	False	NA	NA	NA	58550313	58539047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58539687_58540045_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
88519	chr10	-	3945	18	FSM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	335	-2	335	2	multi-exon	FALSE	canonical	3	414	junction_15	35.8424078528779	746	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGTTCAGACAAGGGCT	NA	False	NA	NA	False	NA	NA	NA	62175986	62104631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
88520	chr2	+	2843	10	NIC	ENSMUSG00000059005.14	novel	1734	10	NA	NA	-2	1173	combination_of_known_junctions	TRUE	canonical	0	0	junction_6	3689.90942376037	37	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTCCTTTTATTCATAT	7492	False	NA	NA	False	NA	NA	NA	75489621	75497638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75494016_75494059_75495371_75495495_75495577_75495646_75495741
88521	chr12	-	1293	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	176	13	19	-13	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTCAACTGCTTGAAGTC	8640	False	NA	NA	False	NA	NA	NA	85421445	85389574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
88522	chr1	-	726	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-41	-31	41	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
88523	chr6	-	1463	8	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	781	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCCACGGATTGCAGCG	9953	False	NA	NA	False	NA	NA	NA	67261298	67244060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67244391_67248178_67248330_67248867_67249012_67249122_67249213_67249847_67249921_67254742_67254921_67258629_67258793_67260964
88524	chr5	+	1419	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	37	0	37	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	12656	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	490	False	NA	NA	False	NA	NA	NA	135807370	135819245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
88525	chr6	+	3005	3	FSM	ENSMUSG00000040370.14	ENSMUST00000039729.5	2436	3	22	-591	3	591	multi-exon	FALSE	canonical	3	14	junction_1	153.5	40	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGAAATTAGTTAAATTTT	NA	False	NA	NA	False	NA	NA	NA	145156903	145163256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_145156979_145160247_145160998_145161076
88526	chr12	-	2534	14	FSM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	-190	1872	-190	-1872	multi-exon	FALSE	canonical	3	69	junction_13	62.3614203298973	197	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGTATTCAAACAAACTA	NA	False	NA	NA	False	NA	NA	NA	55349973	55327647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
88527	chr2	+	4499	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	-43	5	-43	-5	multi-exon	FALSE	canonical	3	230	junction_10	26.4695873268632	970	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGTTTTGAGTGTTTTC	944	False	NA	NA	False	NA	NA	NA	3285205	3329909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
88528	chr17	+	1131	6	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	35	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	172.084397898241	846	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGGGTTGCTTTGTACG	4638	False	NA	NA	False	NA	NA	NA	25459178	25461769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25459316_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
88529	chr4	-	507	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	63	3136	63	0	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	-4	False	NA	NA	False	NA	NA	NA	3835602	3834469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
88530	chr9	+	1253	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	-79	-322	-79	322	mono-exon	FALSE	NA	NA	NA	NA	NA	24	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTGGAAAAGGACATCTGAA	NA	False	NA	NA	False	NA	NA	NA	16941261	16942514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_16941300_16942500
88531	chr9	+	3566	11	NNC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	11	intron_retention	TRUE	canonical	0	0	junction_10	179.871648683165	1288	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATATATACAGTAAAAAGAA	9118	False	NA	NA	False	NA	NA	NA	15217555	15228254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15227157_15227320
88532	chr5	-	2445	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_14	183.295568157341	1094	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCTCCCGCATCACATA	1952	False	NA	NA	False	NA	NA	NA	138185488	138176876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185292
88534	chr11	+	4712	26	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	-10	-583	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.823200808329	1565	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCTTCACTGACTTAAA	NA	False	NA	NA	False	NA	NA	NA	23206030	23247014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206243_23206346_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
88535	chr15	-	5083	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCAGTAAGGTCTCTTCT	9978	False	NA	NA	False	NA	NA	NA	22704912	22699736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
88536	chr2	+	4126	1	Genic_Genomic	ENSMUSG00000037523.14	novel	NA	NA	NA	NA	4003	2037	mono-exon	FALSE	NA	NA	NA	NA	NA	55	114	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAGTAAATAAAAAAAAACTC	1459	False	NA	NA	False	NA	NA	NA	131087856	131091982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_131087900_131092000
88537	chr4	-	2503	15	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	349.644024512862	1373	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484698	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480004_116484557
88538	chr9	+	5822	18	ISM	ENSMUSG00000032479.16	ENSMUST00000165876.8	5573	19	-45	26	19	-25	intron_retention	FALSE	canonical	3	256	junction_1	33.3962267101765	2	96	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAATAAAGCTGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	109760886	109912989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488
88539	chr18	-	530	5	Antisense	novelGene_ENSMUSG00000024608.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5474	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCGGAAAGAGAGAGGCG	NA	False	NA	NA	False	NA	NA	NA	60911618	60907735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_60907756_60909468_60909624_60910001_60910162_60910882_60910960_60911500
88540	chr7	-	2421	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	28	-190	22	190	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	697	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCTAACTCAAGCTGTCA	6048	False	NA	NA	False	NA	NA	NA	90125181	90116455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
88541	chr4	-	3242	8	FSM	ENSMUSG00000028411.16	ENSMUST00000068125.11	5383	8	13	2128	13	414	multi-exon	FALSE	canonical	2	3	junction_7	54.3187869180167	514	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATATTATTTTGCCCGT	14	True	NA	NA	False	NA	NA	NA	40702901	40684509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40702723
88542	chr12	+	5333	20	Fusion	ENSMUSG00000095595.3_ENSMUSG00000021023.15	novel	2250	8	NA	NA	16529	-19	intron_retention	TRUE	non_canonical	0	0	junction_1	125.881688286992	207	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTTAGTAACACTTTT	NA	False	NA	NA	False	NA	NA	NA	55187782	55429262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_+_55188689_55188902_55189068_55190156_55190220_55192017_55192154_55195886_55196023_55196403_55196482_55196565_55196621_55336443_55336577_55339287_55339360_55340566_55340664_55344561_55344676_55345195_55345301_55345678_55345805_55349377_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
88543	chr10	+	1572	2	ISM	ENSMUSG00000038587.11	ENSMUST00000215696.2	5931	3	9592	1	9592	-1	3prime_fragment	FALSE	canonical	3	1663	junction_1	0	203	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCACTGTTTTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	4307359	4309469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_4307940_4308477
88544	chr14	-	4445	26	NNC	ENSMUSG00000022021.15	novel	4582	28	NA	NA	54254	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	64.3478546650935	472	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTAAAAGACGTATGTCTC	NA	False	NA	NA	False	NA	NA	NA	87324325	86892806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156299_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87324019
88545	chr11	-	5596	1	Intergenic	novelGene_2317	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5916	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57451228	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445600_57451200
88546	chr15	+	4362	2	Intergenic	novelGene_3280	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	43	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGTTATGAGAATTTTGT	NA	False	NA	NA	False	NA	NA	NA	39106489	39110919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_39106871_39106938
88547	chr8	+	1791	13	Antisense	novelGene_ENSMUSG00000031948.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	54	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGAGGGCGGGCCCTCGG	NA	False	NA	NA	False	NA	NA	NA	112720001	112737992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_112720338_112721494_112721639_112723090_112723218_112724206_112724295_112724923_112725010_112725155_112725327_112725430_112725595_112726701_112726814_112728110_112728242_112728334_112728356_112729967_112730073_112732263_112732423_112737845
88548	chr7	+	2878	19	ISM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	5575	-5	5575	5	3prime_fragment	FALSE	canonical	2	33	junction_1	11.515555769973	1	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATTTCTGTTCCAAG	NA	False	NA	NA	False	NA	NA	NA	30164724	30186653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
88549	chr9	+	1350	3	ISM	ENSMUSG00000048758.15	ENSMUST00000150576.8	733	4	78	1	-6	0	intron_retention	FALSE	canonical	3	2142	junction_1	912	20	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGTCTGTTGTCATA	NA	False	NA	NA	False	NA	NA	NA	106306730	106308766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_106306776_106307168_106307214_106307506
88550	chr13	+	6612	12	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	2	7322	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	93.5767683255194	840	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAACTTTGTTTTGTTCCTC	NA	False	NA	NA	False	NA	NA	NA	62277731	62328555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277977_62282357_62282500_62293441_62294066_62317255_62317383_62317567_62317629_62318963_62319241_62319323_62319483_62319566_62320193_62320444_62320638_62320721_62321979_62322536_62323456_62326573
88551	chr14	-	3112	20	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-46378	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	283.147945432719	7	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCTTTACCCTGCT	NA	False	NA	NA	False	NA	NA	NA	54801360	54744654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703_54754821_54779022_54779241_54794832_54795135_54801286
88552	chr13	-	2019	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	43	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTATTTTTGGTGGTCTTT	4766	False	NA	NA	False	NA	NA	NA	58550315	58539768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
88553	chr11	-	1944	4	NIC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	51	-2	intron_retention	FALSE	canonical	3	1704	junction_3	268.508638387835	85	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGGGCTTGTGTGTCA	1898	False	NA	NA	False	NA	NA	NA	59119045	59102241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59103522_59103646_59104080_59104165_59104350_59118998
88554	chr11	-	5153	4	Intergenic	novelGene_2333	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	172	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGACCGTTTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	57451123	57445638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57448898_57448960_57449607_57449781_57450383_57450476
88555	chr9	+	3079	9	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	18	0	intron_retention	FALSE	canonical	3	223	junction_8	148.575265017431	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	NA	False	NA	NA	False	NA	NA	NA	15219059	15228274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15224133_15225285_15225329_15225526_15226428_15226678_15226737_15228184
88556	chr2	+	2829	15	NNC	ENSMUSG00000000194.14	novel	6134	18	NA	NA	-1260	731	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.769910684607	127	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTAGGCTTGATAACGT	NA	False	NA	NA	False	NA	NA	NA	31041067	31082856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31041259_31041989_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858
88557	chrUn_JH584304v1	-	7458	25	Intergenic	novelGene_4589	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	297.064655794361	1200	67	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGATGAGAGAGCATC	NA	False	NA	NA	False	NA	NA	NA	59776	4976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_5083_6910_7010_14082_14202_19243_19343_20216_20376_31431_31497_38111_38251_39084_39163_39431_39611_40108_40185_41047_41125_41972_42076_44211_44312_47495_47676_47921_47997_48579_48654_48765_48944_49049_50275_51406_51539_51644_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
88558	chr17	+	2056	1	Intergenic	novelGene_221	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGTTTGGAGGGCGTC	NA	False	NA	NA	False	NA	NA	NA	40153891	40155947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
88560	chr9	+	1352	1	FSM	ENSMUSG00000042293.9	ENSMUST00000048824.9	531	1	-64	-757	-64	757	mono-exon	FALSE	NA	NA	NA	NA	NA	941	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCAGACACACCAGAAGAG	2719	False	NA	NA	False	NA	NA	NA	48406677	48408029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_48406700_48408000
88562	chr8	-	3852	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	-67	-1629	-54	1629	multi-exon	TRUE	canonical	3	204	junction_9	39.0672497112351	672	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTATTCCTCTGCTCATC	NA	False	NA	NA	False	NA	NA	NA	4829621	4784346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
88563	chr16	-	2365	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	29	-74	-23	74	multi-exon	TRUE	canonical	3	963	junction_15	112.803285922348	1615	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCAGTATGGCTGAACT	NA	False	NA	NA	False	NA	NA	NA	3895662	3857760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
88564	chr2	-	3927	6	NIC	ENSMUSG00000005233.17	novel	1352	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	811	junction_5	33.8171554096438	80	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	69036524	69024238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
88565	chr17	+	1788	1	Intergenic	novelGene_178	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCGGTCCCTTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155700
88566	chr3	+	1527	6	NIC	ENSMUSG00000028140.14	novel	1612	7	NA	NA	2	13	combination_of_known_splicesites	FALSE	canonical	3	10	junction_5	87.5337649138891	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTCTGTGTTATTTCTT	8504	False	NA	NA	False	NA	NA	NA	94350645	94356028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94355092
88567	chr6	+	1951	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-32	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1787.48718310148	2	53	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGCTGCTTGCTCTGCT	5083	False	NA	NA	False	NA	NA	NA	85428968	85445450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443615_85443704_85444008_85444142_85444560_85444768_85445034
88568	chr6	+	2031	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	46	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	8	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTTAGTGGTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	122684572	122691584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690627_122690752
88569	chr11	-	955	9	ISM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	2071	223	1937	0	3prime_fragment	FALSE	canonical	3	16927	junction_8	1897.8792769826	32359	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33111135	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105
88570	chr19	-	1038	3	NNC	ENSMUSG00000056185.6	novel	2229	12	NA	NA	3334	-263	intron_retention	FALSE	non_canonical	0	0	junction_1	0	161	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTGAGGGACAAATCAAAAA	NA	False	NA	NA	False	NA	NA	NA	5544059	5542525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_5542830_5543176_5543253_5543401
88571	chr15	+	1200	7	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	36335	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	4309.86846924848	40008	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATAGGTATGTTGGTCCCC	NA	False	NA	NA	False	NA	NA	NA	76788284	76826849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790555_76826533
88572	chr1	+	1252	1	Intergenic	novelGene_404	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCAGAGTTGACATCA	2338	False	NA	NA	False	NA	NA	NA	87610153	87611405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_87610200_87611400
88573	chr11	-	1869	4	NIC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	-52	0	intron_retention	FALSE	canonical	3	1704	junction_3	296.804088022161	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1903	False	NA	NA	False	NA	NA	NA	59119040	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59103772_59103968_59104080_59104165_59104350_59118998
88574	chr13	+	4048	12	Fusion	ENSMUSG00000113626.2_ENSMUSG00000074867.5	novel	353	2	NA	NA	52	1800	multi-exon	TRUE	non_canonical	0	0	junction_1	93.5379005696365	659	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTGTTGACCTAACTTA	NA	False	NA	NA	False	NA	NA	NA	61952131	62323033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_61952220_61974122_61974263_61987297_61987495_62293639_62294066_62317255_62317383_62317567_62317629_62318963_62319241_62319323_62319483_62319566_62320193_62320444_62320638_62320721_62321979_62322536
88575	chrUn_MU069435v1	-	593	1	Intergenic	novelGene_4768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	416	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	593	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_600
88576	chr17	-	2578	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	74	-3	-15	3	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	35492	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGGCTGTGTGCTCATT	NA	False	NA	NA	False	NA	NA	NA	36149124	36144809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
88577	chr13	+	2502	6	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	32	462	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	28.5278810990231	67	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61952111	62009951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61952356_61974122_61974263_62005782_62005910_62006094_62006156_62007517_62008234_62008737
88578	chr2	-	7468	10	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	3078	71022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	443.690582876551	509	70	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTCTGACTGGCAGGTC	5426	False	NA	NA	False	NA	NA	NA	177266914	177189974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177190110_177193534_177193590_177198700_177198826_177199032_177199095_177200244_177200564_177200647_177204255_177259262_177262087_177263226_177263288_177263479_177263607_177266761
88579	chr13	-	3394	13	NIC	ENSMUSG00000034152.7	novel	4922	13	NA	NA	30	178	combination_of_known_junctions	FALSE	canonical	3	44	junction_12	65.7558615891643	237	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGCTTTTCATTCCTA	7203	False	NA	NA	False	NA	NA	NA	74356798	74319939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74355941
88580	chr19	-	900	4	Antisense	novelGene_ENSMUSG00000024661.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	760	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGATCCTGCGTCAGGCGAG	2177	False	NA	NA	False	NA	NA	NA	9962457	9960033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_9960347_9961543_9961690_9961921_9962050_9962144
88581	chr17	+	990	1	Intergenic	novelGene_170	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGCCTCCCGTGCGCGCA	NA	False	NA	NA	False	NA	NA	NA	40153887	40154877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40154900
88582	chr19	+	3969	25	FSM	ENSMUSG00000071650.7	ENSMUST00000096246.5	3860	25	-51	-58	-21	58	multi-exon	FALSE	canonical	3	261	junction_6	273.686404967234	1421	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATTTTATTCTGTATAAG	1842	False	NA	NA	False	NA	NA	NA	8875413	8894094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
88584	chr2	+	6619	8	Antisense	novelGene_ENSMUSG00000074527.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	74	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAACAGATCACACAGAA	NA	False	NA	NA	False	NA	NA	NA	176537959	176616047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_176541484_176541676_176541878_176542223_176542311_176601577_176603883_176609046_176609304_176610458_176610519_176610723_176610852_176615990
88585	chr19	+	4943	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	10	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	38	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAAATGATCTGACTG	1479	False	NA	NA	False	NA	NA	NA	44282524	44295278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44294048_44294122
88586	chr1	-	2534	14	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-10	326	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2048.43442600273	40	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGAATGGTACCCCATT	NA	False	NA	NA	False	NA	NA	NA	86287096	86277890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278410_86278716_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
88587	chr7	+	2337	5	Antisense	novelGene_ENSMUSG00000108731.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGACAGGTAGAGAAAATGAA	NA	False	NA	NA	False	NA	NA	NA	26581763	26710369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_26582366_26583006_26583566_26583787_26583847_26706384_26706472_26709339
88588	chr8	-	2357	6	Antisense	novelGene_ENSMUSG00000110458.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGATGCTCTTCCAAGGG	NA	False	NA	NA	False	NA	NA	NA	20724406	20697608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20697780_20697946_20698093_20711899_20712264_20717196_20717501_20721121_20721235_20723147
88589	chr17	-	1300	1	Intergenic	novelGene_175	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	36	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTACCTTCTTAATCAC	NA	False	NA	NA	False	NA	NA	NA	40155187	40153887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_40153900_40155200
88590	chr11	-	3922	21	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	-64	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	190.034016691749	939	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGACTTTCGTCTGGTC	9072	False	NA	NA	False	NA	NA	NA	102207595	102195392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102195866_102196675_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
88591	chr17	+	3491	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	89	6	10	-6	multi-exon	FALSE	canonical	3	1413	junction_6	319.856779473251	50	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCAGTGGTGGCGCACGT	509	False	NA	NA	False	NA	NA	NA	56610409	56630480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
88592	chrX	+	2327	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-46	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1047.41860927499	4	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491951_100492047
88593	chr11	+	1071	10	NNC	ENSMUSG00000017404.13	novel	751	6	NA	NA	-2	63088	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	7520.05522701024	2691	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97917780	97984406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096_97921304_97935479_97935516_97943875_97944011_97982564_97982600_97984246
88594	chr13	+	4405	15	NNC	ENSMUSG00000005397.9	novel	6091	20	NA	NA	34	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	282.547196707642	43	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTGATGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	13612169	13686849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_13612293_13652844_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
88595	chrM	+	3436	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1_ENSMUSG00000064371.1	novel	1824	1	NA	NA	0	19	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCACCACCAGCACCCAAA	-4	True	NA	4	True	NA	NA	NA	11741	15374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13950_14146
88596	chr4	+	4761	3	Intergenic	novelGene_2009	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	91	48	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCAGCTACAATCAGCTG	NA	False	NA	NA	False	NA	NA	NA	143710523	143715401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_143710651_143710693_143715075_143715148
88597	chr10	+	5327	3	NNC	ENSMUSG00000038587.11	novel	5956	3	NA	NA	0	-641	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	100	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTATATTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	4284544	4308829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4284767_4303141_4307940_4308522
88598	chr4	-	895	5	NIC	ENSMUSG00000047675.16	novel	860	6	NA	NA	0	-8	intron_retention	FALSE	canonical	3	8358	junction_4	2115.77019073433	139	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGTATGCTGTCTAGGT	NA	False	NA	NA	False	NA	NA	NA	117013281	117011038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117011185_117011495_117012011_117012204_117012305_117012767_117012875_117013254
88599	chr10	-	3439	11	NNC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	-9161	1190	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	63.0080153631266	31	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATAGATGGCTGGCTTTT	2351	False	NA	NA	False	NA	NA	NA	41631795	41593645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41631694
88600	chr6	-	5475	14	NNC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	-775	-14	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_13	29.6943004512641	569	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTGCCCTCATTTGGT	9549	False	NA	NA	False	NA	NA	NA	38332313	38282234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849_38331470_38332029
88601	chr8	-	4282	23	NNC	ENSMUSG00000031835.17	novel	4195	23	NA	NA	-80	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	116.027399514152	1	157	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCATGTGTCGTGCCCC	8061	False	NA	NA	False	NA	NA	NA	120285554	120234889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268927_120269463_120269668_120272722_120272981_120274138_120274625_120285384
88602	chr7	-	2389	5	NIC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	950	-3	intron_retention	FALSE	canonical	3	4974	junction_1	4113.4459018565	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	9389	False	NA	NA	False	NA	NA	NA	99131891	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99128159_99128480_99128678_99129082_99130999_99131467_99131562_99131776
88603	chr15	-	1883	13	NNC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-314	-23	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_12	323.628934893035	1	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAATCAGCTTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	63932641	63802815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932482
88604	chr5	+	4631	12	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	6	5009	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	111.952321610807	728	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGAACAGAACTGACTGGG	NA	False	NA	NA	False	NA	NA	NA	135398812	135410668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729_135407028_135407487_135407611_135409772
88606	chr2	+	848	1	ISM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	2973	1773	2840	140	mono-exon	FALSE	NA	NA	NA	NA	NA	315	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATTTTGTGCTGTTAAT	NA	False	NA	NA	False	NA	NA	NA	162776420	162777268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162776400_162777300
88607	chr9	+	799	5	NIC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	1	-5	intron_retention	FALSE	canonical	3	10044	junction_1	2963.91573766867	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTAAATCTCATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	120400580	120403493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402884_120403160
88608	chr18	+	3177	17	NNC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	3977	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	483.045057260449	1	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGATATCTGTGCCTTT	NA	False	NA	NA	False	NA	NA	NA	35686462	35724738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690450_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712434_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
88609	chr6	+	2489	2	Intergenic	novelGene_4154	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	709	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTAACTCGCTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	47161078	47167374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_47161995_47165801
88610	chr6	+	1688	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	3664	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2053.24139404558	39	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122688190	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122688763_122689587_122689675_122690100_122690305_122690767
88611	chr1	-	2466	14	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	294.372504826169	507	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624027	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177590873_177590913_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
88612	chr8	+	2010	9	NNC	ENSMUSG00000031447.8	novel	2229	9	NA	NA	124	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	967.840605420128	246	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTCTGTCTGGACGTG	8326	False	NA	NA	False	NA	NA	NA	13209284	13225326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13209337_13215833_13215968_13217157_13217378_13217806_13217966_13221204_13221384_13222540_13222661_13223626_13223694_13223779_13223951_13224418
88613	chrX	-	3530	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	-13	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	325.116558882355	54	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256270	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93240995_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
88614	chr3	+	2773	7	NIC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-6	0	intron_retention	FALSE	canonical	3	3249	junction_3	144.897281624681	70	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986954	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995784_89997103_89997167_89997316_89997387_90006834
88615	chr2	+	1400	3	Antisense	novelGene_ENSMUSG00000078861.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	388	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTGACCTGGAAGAGCC	NA	False	NA	NA	False	NA	NA	NA	177710247	177720262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177711407_177711613_177711742_177720149
88616	chr8	-	3032	10	Fusion	ENSMUSG00000053226.8_ENSMUSG00000003813.16	novel	2074	9	NA	NA	-62	1706	multi-exon	FALSE	non_canonical	0	0	junction_1	428.66669546685	39	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCATTGCGAGCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	85567356	85558941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_85559268_85560734_85562304_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
88617	chr3	+	5438	11	NIC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_4	226.907668446882	2676	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAGTGTCTGTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	41510166	41571293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548237_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
88618	chr9	+	2534	10	Fusion	ENSMUSG00000032185.16_ENSMUSG00000048429.11	novel	3585	14	NA	NA	667	177	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCTCCACACAACGGCAAC	7996	False	NA	NA	False	NA	NA	NA	21499365	21504096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_21500854_21500929_21501057_21501141_21501330_21501411_21501574_21501651_21501768_21502721_21502809_21503193_21503277_21503356_21503515_21503823_21503887_21504034
88619	chrM	+	987	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	20	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	18	False	NA	107	True	NA	NA	NA	14164	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14598_14734
88620	chr11	+	4047	26	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	-10	185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.823200808329	10	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGTAAATTCTAATACAAA	NA	False	NA	NA	False	NA	NA	NA	23206030	23246418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206190_23206362_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
88621	chr17	-	1296	6	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	158	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGGCGGACCACCACCG	3054	False	NA	NA	False	NA	NA	NA	29261076	29251654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29251761_29255212_29255421_29257461_29257597_29259746_29259786_29260178_29260265_29260354
88622	chr6	+	645	3	Antisense	novelGene_ENSMUSG00000029922.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGATCCGGCATTCGGGG	NA	False	NA	NA	False	NA	NA	NA	39375949	39377413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_39376371_39376732_39376873_39377329
88623	chr7	-	2496	6	NIC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-34	5	intron_retention	FALSE	canonical	3	4974	junction_1	3702.34142131706	2	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGGCCTGACTGGATT	8388	False	NA	NA	False	NA	NA	NA	99132892	99128094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99128159_99128480_99128678_99129082_99130999_99131467_99131562_99131776_99131908_99132798
88624	chr11	-	3478	1	FSM	ENSMUSG00000065686.3	ENSMUST00000083752.3	136	1	-2048	-1294	-2048	1294	mono-exon	FALSE	NA	NA	NA	NA	NA	220	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAGAGGATCAGTTCT	NA	False	NA	NA	False	NA	NA	NA	6572502	6569024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6569000_6572500
88625	chr2	-	2269	5	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	113	multi-exon	FALSE	canonical	0	0	junction_1	70.7778213849508	15	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTTGCTCTGACCTTGAA	NA	False	NA	NA	False	NA	NA	NA	156681710	156631618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644081_156679742_156679834_156680337_156680457_156681454
88626	chr2	-	2752	4	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	70	-28	intron_retention	FALSE	canonical	3	17	junction_3	8.52447456836295	239	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAATGTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166349921	166341988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166349807
88627	chr15	-	1748	5	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	23	721	combination_of_known_junctions	FALSE	canonical	3	214	junction_3	13227.8539335563	4	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGGTAAGGCTGATTGG	3614	False	NA	NA	False	NA	NA	NA	79967511	79963896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590
88628	chr4	-	479	1	FSM	ENSMUSG00000068240.6	ENSMUST00000089430.6	504	1	0	25	0	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6	True	NA	NA	False	NA	NA	NA	3973595	3973116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3973100_3973600
88629	chrM	+	1124	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	20	0	20	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	18	False	NA	107	True	NA	NA	NA	14164	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
88630	chr2	+	1404	5	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	61	-370	intron_retention	FALSE	canonical	0	0	junction_4	69.930322464579	15	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTACCTCTGGTTGGTGGGC	NA	False	NA	NA	False	NA	NA	NA	104389597	104401404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389830_104390068_104390321_104397520_104397622_104398205_104399012_104401391
88631	chr2	-	1211	2	Antisense	novelGene_ENSMUSG00000081434.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1588	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGCTTTTCTTTCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	152196860	152195456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_152196477_152196669
88632	chr17	-	1040	2	Genic_Genomic	ENSMUSG00000118161.2	novel	882	1	NA	NA	-10643	39	multi-exon	FALSE	non_canonical	0	0	junction_1	0	565	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GATAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	31874396	31862832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_31863678_31874201
88633	chr17	+	2052	1	Intergenic	novelGene_185	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1406	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGGAGCTGTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
88634	chr11	+	2652	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	-54	-173	-14	173	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	33	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	NA	False	NA	NA	NA	29476393	29495452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
88635	chr19	-	5026	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	-188	-1857	-121	1857	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	675	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTGGATCAAGAAAGATGG	NA	False	NA	NA	False	NA	NA	NA	10502667	10476040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
88636	chr18	+	4096	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	11	-1456	0	1456	multi-exon	FALSE	canonical	3	181	junction_2	18.3711730708738	518	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCCATGTTGACTTTGG	-1	True	NA	NA	False	NA	NA	NA	4375602	4398786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
88637	chr11	-	496	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	51	512	-4	-1	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	23	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGAGCTGGTCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	97673212	97668864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
88638	chr8	+	1804	3	Intergenic	novelGene_1636	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	46.5	7	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTACATCTTCTATTAATTA	NA	False	NA	NA	False	NA	NA	NA	43809184	43825738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43809201_43811094_43811168_43824023
88639	chr1	-	5496	15	Fusion	ENSMUSG00000102246.2_ENSMUSG00000037474.14	novel	4230	16	NA	NA	0	-193	multi-exon	FALSE	non_canonical	0	0	junction_4	130.56316400853	467	88	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCCCACCTCCCAGTAAA	NA	False	NA	NA	False	NA	NA	NA	191307633	191268189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280518_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
88640	chr14	+	2821	3	ISM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	2688	1	2225	-1	3prime_fragment	FALSE	canonical	3	3503	junction_2	111	595	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGGTGCCTTCTTGACC	NA	False	NA	NA	False	NA	NA	NA	99538814	99552471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_99539691_99540853_99540914_99550586
88643	chr4	-	3885	19	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	20	3	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_15	381.985331144897	1477	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGCCACTCACATTTA	NA	False	NA	NA	False	NA	NA	NA	135080493	135047798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135073567_135073757_135074045_135074169_135074425_135074516_135080407
88644	chr6	-	1883	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	118	0	-26	0	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	6	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1685	False	NA	NA	False	NA	NA	NA	7693136	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
88645	chr5	-	2729	10	FSM	ENSMUSG00000044221.15	ENSMUST00000113234.8	2286	10	97	-540	97	530	multi-exon	FALSE	canonical	3	10	junction_9	165.873073593064	477	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAAAAAAGTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	88823428	88806776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823353
88646	chrM	+	1600	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-284	62	-284	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	20	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATAATTCCACTTATTC	5	True	NA	NA	False	NA	NA	NA	9882	11482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
88647	chr10	-	1720	6	FSM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	201	2872	-14	274	multi-exon	FALSE	canonical	3	258	junction_5	21.4513402844671	490	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAACACGCAGCAGATA	NA	False	NA	NA	False	NA	NA	NA	121933075	121916890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
88648	chr4	-	2584	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	25	4542	-2	1998	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	776	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGATTCGGTTTAGAA	NA	False	NA	NA	False	NA	NA	NA	119089884	119081580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
88649	chr16	-	1700	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	-466	-500	-385	-4	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	326	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTGCTGTTTGGCTTGG	6801	False	NA	NA	False	NA	NA	NA	17349385	17345945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
88650	chr3	+	4037	21	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	4965.7784311727	2064	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	NA	False	NA	NA	NA	102927928	102965502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201_102964618_102964711
88651	chr13	+	8452	24	Intergenic	novelGene_1516	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	929	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGGGGGGCGGAGCCCGG	NA	False	NA	NA	False	NA	NA	NA	98975526	99062888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_98981127_98982926_98983072_98983835_98983913_98985663_98985759_98986611_98986697_98989365_98989457_98989905_98990007_98991650_98991741_98991821_98992087_98993396_98993483_98994892_98995066_98996270_98996495_98997146_98997301_99000214_99000387_99000937_99000995_99001474_99001598_99003555_99003679_99006749_99006828_99012109_99012243_99015124_99015232_99021019_99021173_99024973_99025050_99027184_99027299_99062758
88652	chr13	+	754	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-19	-21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7943	False	NA	NA	False	NA	NA	NA	74554508	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74555102_74555283
88653	chr8	-	6708	31	Fusion	ENSMUSG00000109727.2_ENSMUSG00000031667.17	novel	2200	11	NA	NA	11	41720	intron_retention	TRUE	non_canonical	0	0	junction_1	186.694212253323	403	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTCCTCAGTCCCATGC	NA	False	NA	NA	False	NA	NA	NA	91860640	91796691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_91797033_91800768_91800900_91802540_91802742_91805505_91805571_91809924_91810054_91812058_91812220_91812300_91812368_91813610_91813796_91816680_91816848_91822174_91822285_91823389_91823494_91826663_91826804_91827973_91828139_91828823_91828938_91832907_91833173_91833328_91833610_91833683_91833861_91839143_91839216_91840610_91840711_91841666_91841876_91842287_91842453_91848901_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91860527
88654	chr6	-	3312	10	NIC	ENSMUSG00000029752.13	novel	2016	12	NA	NA	2697	417	intron_retention	FALSE	canonical	3	8132	junction_6	343.204974207816	80	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCTAGCTCACACAGCC	5296	False	NA	NA	False	NA	NA	NA	7689525	7674751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251
88655	chr16	-	2854	16	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	1573	7	NA	NA	-5134	504	multi-exon	FALSE	canonical	3	5	junction_15	405.643664097225	4	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTGCTCAGTTTTAAAT	1096	False	NA	NA	False	NA	NA	NA	38375754	38318204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38375591
88656	chr11	+	3024	16	Antisense	novelGene_ENSMUSG00000051378.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	447	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGTCCGCTCATCCGCG	NA	False	NA	NA	False	NA	NA	NA	102796661	102815949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102797102_102797317_102797407_102797820_102797905_102798940_102799465_102799712_102799917_102803177_102803296_102803745_102803915_102804275_102804375_102804507_102804585_102805075_102805252_102805363_102805563_102805640_102805752_102805975_102806078_102806362_102806527_102807014_102807344_102815810
88657	chr1	+	3039	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	3	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	110.424453813456	152	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTCACTGATAGCTGT	8322	False	NA	NA	False	NA	NA	NA	191307876	191353674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318689_191323920_191324022_191326540_191326586_191328284_191328485_191328998_191329122_191334417_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347940_191349923_191350023_191351707_191351894_191353276
88658	chr17	-	1840	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	635	1750	mono-exon	FALSE	NA	NA	NA	NA	NA	1092	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAGCGCGAGCGAAGCCG	NA	False	NA	NA	False	NA	NA	NA	40159083	40157243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157200_40159100
88659	chr3	+	518	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	-29	-64	-29	64	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7635	False	NA	NA	False	NA	NA	NA	37768859	37769377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_37768900_37769400
88660	chr11	+	937	5	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	19846	2	14420	0	3prime_fragment	FALSE	canonical	3	696	junction_1	34.6509379382435	530	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTTTCTTGCTGTTA	NA	False	NA	NA	False	NA	NA	NA	75397491	75400273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
88661	chr15	-	2184	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	326	5	at_least_one_novel_splicesite	FALSE	canonical	2	87	junction_12	742.606721660635	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	3082	False	NA	NA	False	NA	NA	NA	43145696	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43144906
88663	chr12	+	4441	21	NIC	ENSMUSG00000021111.16	novel	4380	22	NA	NA	3	0	intron_retention	FALSE	canonical	3	41	junction_9	463.255035050889	642	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATAGTTGGCTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	105750955	105805203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
88664	chr4	-	6996	52	NNC	ENSMUSG00000028559.18	novel	2903	24	NA	NA	0	60502	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	134.168173603693	1214	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCACCCTCCTGACAGCC	NA	False	NA	NA	False	NA	NA	NA	109059431	108857839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_108858361_108870705_108871035_108875030_108875118_108876154_108876307_108881398_108881473_108884630_108884728_108885946_108886068_108889643_108889705_108890486_108890559_108891875_108891946_108895169_108895250_108896854_108896974_108897050_108897110_108897379_108897435_108900570_108900678_108901744_108901867_108903789_108903876_108904790_108904912_108906261_108906316_108908035_108908187_108911093_108911220_108912120_108912308_108913696_108913844_108915453_108915502_108915776_108915836_108916185_108916266_108916968_108917058_108917263_108917381_108917963_108918056_108918132_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
88665	chrUn_MU069435v1	-	1696	1	Intergenic	novelGene_4776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	386	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTATACAGAGAAACCCTGT	NA	False	NA	NA	False	NA	NA	NA	15498	13802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_13800_15500
88666	chr8	+	1882	4	Antisense	novelGene_ENSMUSG00000051176.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11999	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGATGTGGGCGGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	43748099	43760123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_43749573_43753663_43753745_43757514_43757600_43759880
88667	chr13	-	3546	15	NIC	ENSMUSG00000034617.8	novel	3861	15	NA	NA	59	79	combination_of_known_junctions	FALSE	canonical	1	5	junction_14	100.027853263836	20	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATCCTGTGCTATTGTGTG	NA	False	NA	NA	False	NA	NA	NA	68730154	68709402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68729739
88668	chr2	-	3545	11	Fusion	ENSMUSG00000015790.17_ENSMUSG00000014867.10	novel	3281	6	NA	NA	6425	-946	multi-exon	FALSE	non_canonical	0	0	junction_1	408.893885989996	1	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGCCACCACGTGAGACA	NA	False	NA	NA	False	NA	NA	NA	26816970	26806414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_26806514_26806714_26806876_26807443_26807541_26808937_26809068_26809203_26809369_26809736_26810517_26810568_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780
88671	chr5	-	5665	6	FSM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	-211	3528	-211	1236	multi-exon	FALSE	canonical	3	228	junction_5	18.6010752377383	1108	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGGTAGATTAAATTT	5226	False	NA	NA	False	NA	NA	NA	150589288	150562964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588965
88672	chr4	-	2437	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	70	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	462.91114403601	6	74	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137523625	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483055_137485882_137486044_137523552
88673	chr5	+	589	1	ISM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	12915	5299	12733	345	mono-exon	FALSE	NA	NA	NA	NA	NA	15	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGGCAGATGGAGTCAAG	NA	False	NA	NA	False	NA	NA	NA	125531546	125532135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_125531500_125532100
88674	chr4	-	2399	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	74	-367	-44	367	multi-exon	FALSE	canonical	3	184	junction_2	7.07106781186548	565	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATCTAATAAAAACTAAAA	NA	False	NA	NA	False	NA	NA	NA	116565529	116559108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
88675	chr3	-	6334	11	Intergenic	novelGene_3083	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	22	45	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGCAAGATTTTATCGAAA	NA	False	NA	NA	False	NA	NA	NA	12611622	12400853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_12401552_12401612_12401848_12426993_12428754_12441570_12441802_12446205_12446213_12492143_12492350_12537516_12539279_12590232_12590248_12610083_12611194_12611237_12611404_12611478
88676	chr8	-	1982	9	ISM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	2846	38	0	32	3prime_fragment	FALSE	canonical	3	363	junction_1	41.4819237740971	14	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGTACTATGTACTAATA	NA	False	NA	NA	False	NA	NA	NA	91857779	91850164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668
88678	chr17	-	2571	2	NNC	ENSMUSG00000024006.18	novel	1663	8	NA	NA	-639	189	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	519	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGGAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	29201799	29198938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29199726_29200015
88679	chr3	+	904	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1786.0104814922	106	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3617	False	NA	NA	False	NA	NA	NA	88486974	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494201_88495230
88680	chr8	+	426	3	Antisense	novelGene_ENSMUSG00000055553.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	180	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGGGTCTTCACGAAGAT	NA	False	NA	NA	False	NA	NA	NA	70960916	70962247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_70961179_70961945_70962035_70962172
88681	chr2	+	2108	10	NNC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	-6	23184	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	310.926214898505	3	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTGAAAAAAAAAACCAAAAA	NA	False	NA	NA	False	NA	NA	NA	166857223	166900051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166866710_166867764_166899897
88682	chr14	-	1219	8	Antisense	novelGene_ENSMUSG00000093156.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTCAATCCCTGTAGGA	1729	False	NA	NA	False	NA	NA	NA	30295573	30290132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_30290313_30290929_30291096_30291911_30292068_30292154_30292289_30292917_30293002_30293106_30293201_30294162_30294286_30295291
88683	chr13	-	6394	17	NNC	ENSMUSG00000021546.19	novel	2653	15	NA	NA	-7805	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	3315.51926551483	597	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTATGGGGTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	58558962	58538962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206_58550601_58552381_58552468_58554813_58554903_58555721
88684	chr3	+	2773	7	NIC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-6	0	intron_retention	FALSE	canonical	3	3249	junction_3	144.897281624681	67	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986954	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995784_89997103_89997167_89997316_89997387_90006834
88685	chr9	+	2161	8	NIC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	18	-5	intron_retention	FALSE	canonical	3	166	junction_4	16.1042521954765	1933	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174086	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
88686	chr11	-	5665	1	Intergenic	novelGene_2319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	76	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57451297	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445600_57451300
88687	chr2	-	1363	7	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-37	-939	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4985.08710778681	5	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGATTCCTGGGCTGT	3699	False	NA	NA	False	NA	NA	NA	154734788	154714276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714799_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
88688	chr11	+	5255	8	NNC	ENSMUSG00000040599.14	novel	3003	3	NA	NA	-9679	0	intron_retention	FALSE	non_canonical	0	0	junction_1	46.9615561401242	348	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	NA	False	NA	NA	NA	70900757	70918197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70901252_70903934_70904024_70904265_70904469_70905377_70905466_70906547_70906627_70909137_70911016_70915375_70915538_70915935
88689	chr17	+	1813	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	22	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1027.9436988152	6	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCACCTGGGTTCCTGTCC	NA	False	NA	NA	False	NA	NA	NA	13135290	13143442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142199_13142416_13142581_13143146
88690	chr14	+	2158	2	Intergenic	novelGene_564	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGCCTTAGCTCCGT	NA	False	NA	NA	False	NA	NA	NA	49843051	49846584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_49843557_49844931
88691	chr15	+	3652	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	68	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	224.467626965573	2073	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTAATGTTGCAGTTT	NA	False	NA	-26	True	NA	NA	NA	101982366	102005606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992674_101992714_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
88692	chr16	+	6451	1	Antisense	novelGene_ENSMUSG00000022914.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	175	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCCTTAATGAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	95793147	95799598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95793100_95799600
88693	chr11	-	2211	1	NIC	ENSMUSG00000016559.15	novel	2514	6	NA	NA	3	-330	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915327	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115913100_115915300
88694	chr3	-	875	2	Genic_Genomic	ENSMUSG00000047676.7	novel	885	1	NA	NA	-71	79	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGAAATGATAGCTAT	NA	False	NA	NA	False	NA	NA	NA	149779250	149778215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_149778578_149778737
88695	chr2	+	4465	32	ISM	ENSMUSG00000052533.15	ENSMUST00000064447.12	5710	44	28716	3	-27827	-3	3prime_fragment	FALSE	canonical	3	896	junction_2	103.671437288529	55	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTGTCATGTGGCAACT	NA	False	NA	NA	False	NA	NA	NA	30205124	30234275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
88696	chr10	-	1887	15	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	17	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	639.161504294047	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCCCTTAATGTCTTAC	NA	False	NA	NA	False	NA	NA	NA	116899702	116886913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898767_116899561
88697	chr2	-	4955	25	Antisense	novelGene_ENSMUSG00000099091.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.199826313471363	122	71	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGACTTCCGTCGTGGCG	5856	False	NA	NA	False	NA	NA	NA	162926588	162859391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162859452_162864292_162864418_162865267_162865353_162867801_162867882_162869948_162870022_162871652_162871780_162873098_162873190_162875153_162875222_162878476_162878634_162882546_162882634_162884609_162884720_162887122_162887295_162901418_162901513_162903441_162903514_162904368_162904467_162906196_162906419_162910073_162910234_162914541_162914834_162916300_162916722_162917552_162917696_162919706_162919807_162921511_162921627_162922636_162922983_162924468_162924618_162925080
88698	chr17	-	1915	9	NIC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	27	-13	combination_of_known_junctions	FALSE	canonical	3	6	junction_8	57.9427249531811	1442	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAGAAAAAAAATTGACTG	NA	False	NA	NA	False	NA	NA	NA	26309167	26300216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26309070
88699	chr5	-	878	4	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGGGAACAGGGCGGCAG	NA	False	NA	NA	False	NA	NA	NA	129100229	129097928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129098054_129099064_129099253_129099436_129099608_129099835
88700	chr6	-	7928	4	Intergenic	novelGene_4127	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	23	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCGGTACTCTTAACTTCT	NA	False	NA	NA	False	NA	NA	NA	23517467	23364887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_23367438_23368123_23370525_23505691_23505747_23514545
88701	chr11	+	1545	5	Antisense	novelGene_ENSMUSG00000020914.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTCCCTAGTTTCATTTG	829	False	NA	NA	False	NA	NA	NA	98908675	98915016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_98909768_98912536_98912603_98913167_98913257_98913665_98913819_98914871
88702	chr15	-	1834	13	NNC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-26163	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	329.244199729556	479	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	NA	False	NA	NA	False	NA	NA	NA	63895981	63802790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63895896
88703	chrX	+	2138	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1047.41860927499	2	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473321	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491838_100492100
88704	chr2	-	1139	11	NNC	ENSMUSG00000027170.13	novel	1283	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	887.097153642148	5	22	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2675	False	NA	NA	False	NA	NA	NA	104847390	104830000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843593_104843667_104844089_104844229_104845172_104845248_104847290
88705	chr7	-	2514	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	-1546	0	-1546	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	43	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	9306	False	NA	NA	False	NA	NA	NA	45110854	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
88706	chr13	-	4732	32	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	52	66626	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	233.757552032344	1148	53	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCGCGGGGACGAAACCC	7314	False	NA	NA	False	NA	NA	NA	113063854	112937325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_112937799_112971390_112971548_112993279_112993559_112996175_112996236_113003329_113003507_113003976_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
88707	chr19	-	2703	10	Antisense	novelGene_ENSMUSG00000064646.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCGCGTCGCCGCCGCA	NA	False	NA	NA	False	NA	NA	NA	38062865	38043515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38043764_38045855_38045989_38046234_38046430_38048526_38048803_38051048_38051120_38057527_38057677_38058085_38058395_38059514_38059588_38060209_38060338_38061744
88710	chr8	+	680	5	FSM	ENSMUSG00000031818.13	ENSMUST00000034276.13	745	5	65	0	-21	0	multi-exon	FALSE	canonical	3	8115	junction_1	456.952609687263	10	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	121395025	121400946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_121395095_121396047_121396122_121399463_121399632_121399959_121400092_121400709
88711	chr5	+	1437	3	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAGAGAAAAATAAATAATG	NA	False	NA	NA	False	NA	NA	NA	142888882	142890539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095
88712	chr11	-	3308	16	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-14	1795	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.865819431275	21	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAAGAGAAGCTGATAGT	NA	False	NA	NA	False	NA	NA	NA	95896780	95852466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95853281_95853886_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
88713	chr3	+	1822	12	Antisense	novelGene_ENSMUSG00000053398.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11019	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGCAGGGTTCTCGATC	NA	False	NA	NA	False	NA	NA	NA	98220485	98247233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_98220773_98221480_98221724_98222382_98222511_98223720_98223853_98226933_98227088_98227960_98228110_98228527_98228662_98235362_98235462_98235604_98235662_98240552_98240617_98241822_98241974_98247009
88714	chr13	+	2122	1	FSM	ENSMUSG00000058385.9	ENSMUST00000079251.8	618	1	2	-1506	2	1506	mono-exon	FALSE	NA	NA	NA	NA	NA	1365	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGCAAGACCGTTTCTC	3225	False	NA	NA	False	NA	NA	NA	23755571	23757693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_23755600_23757700
88715	chr2	+	2032	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	-121	0	-121	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	8336	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	NA	NA	NA	143757118	143785244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
88716	chr5	+	799	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	77	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6624.55618437945	6	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTGGTGTCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	121343548	121347027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345217_121346453_121346639_121346844
88717	chr9	-	4327	10	ISM	ENSMUSG00000032113.17	ENSMUST00000172702.9	3797	12	2062	155	1551	-155	intron_retention	FALSE	canonical	3	367	junction_7	38.2954724461854	2	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAACAACTGTTTTTTGAA	2994	False	NA	NA	False	NA	NA	NA	36635608	36619932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056
88718	chr10	-	2393	11	NNC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	-5621	-2	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_10	58.0965575572254	372	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTGTGGAAATATTCTG	5891	False	NA	NA	False	NA	NA	NA	41628255	41594838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
88720	chr1	+	717	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	-104	-130	-104	130	mono-exon	FALSE	NA	NA	NA	NA	NA	29	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGAGGCAGATG	NA	False	NA	NA	False	NA	NA	NA	43228211	43228928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43228200_43228900
88722	chrM	-	1942	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGAGAATTGGAATTCT	9986	False	NA	-1	True	NA	NA	NA	3710	1768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1800_3700
88723	chr3	+	3572	5	Antisense	novelGene_ENSMUSG00000040943.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTACGGGCTCCTATA	NA	False	NA	NA	False	NA	NA	NA	133185980	133212443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_133186105_133187095_133187186_133188996_133189081_133191274_133194478_133212372
88724	chrX	+	2712	16	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	-16	-3	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	829.262580047277	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTGAATTTGCTTTTC	NA	False	NA	-49	True	NA	NA	NA	74139675	74153380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140193_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
88725	chr13	+	4409	2	Intergenic	novelGene_1552	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113855139	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113857314_113858143
88726	chr17	+	1401	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	42	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	1751.13484632109	7	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3078	False	NA	NA	False	NA	NA	NA	35816956	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35820924_35820988
88727	chr4	+	3587	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105874.9	3153	8	-150	-284	-125	284	multi-exon	FALSE	canonical	3	255	junction_4	12.5324069711207	504	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTAAAAAATGGTTATTA	1931	False	NA	NA	False	NA	NA	NA	134070366	134082079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_134070648_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
88728	chr2	+	2944	18	Antisense	novelGene_ENSMUSG00000006800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	26	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGCTGGAAGAGATCGGC	NA	False	NA	NA	False	NA	NA	NA	165915974	165936544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165916738_165917413_165917468_165917690_165917730_165919441_165919562_165920956_165921102_165921379_165921549_165921935_165921997_165922716_165922812_165923206_165923301_165923394_165923629_165924494_165924707_165925777_165925906_165926305_165926361_165927600_165927731_165928904_165929082_165931117_165931264_165935368_165935539_165936392
88729	chr11	-	3318	9	NNC	ENSMUSG00000045667.15	novel	3572	8	NA	NA	-8857	2	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_7	230.188204248176	390	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGGTGGTACTCATTT	NA	False	NA	NA	False	NA	NA	NA	72311396	72279987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72311055_72311162_72311290
88730	chr3	+	4298	20	NIC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-3	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	4721.79777608351	5	150	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTAGCACCTAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	102927976	102965495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102928208_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
88731	chr9	-	1022	7	Antisense	novelGene_ENSMUSG00000064925.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	54	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGCGGCCGGAAATGAC	NA	False	NA	NA	False	NA	NA	NA	119960623	119956853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_119956896_119957521_119957688_119958222_119958344_119959182_119959428_119959831_119959956_119960065_119960230_119960463
88732	chr12	+	4439	23	NNC	ENSMUSG00000021111.16	novel	3022	23	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	451.408218982873	1307	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATAGTTGGCTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	105750969	105805203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023_105804349_105804409
88733	chr11	+	2752	14	NNC	ENSMUSG00000017428.17	novel	2848	14	NA	NA	-11	-8	intron_retention	FALSE	non_canonical	0	0	junction_13	283.460171168814	1062	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAAAGGTGTCCTTTCT	NA	False	NA	NA	False	NA	NA	NA	80319429	80364066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80363550_80363773
88734	chrM	-	754	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-680	-5	680	mono-exon	FALSE	NA	NA	NA	NA	NA	32	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACAATAAAGCCTAGAAAG	9245	False	NA	NA	False	NA	NA	NA	6943	6189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_6200_6900
88735	chr3	+	4976	25	NNC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	2	43341	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	87.9714975148201	461	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGAGCGCCCCGGGCGCCCG	6598	False	NA	NA	False	NA	NA	NA	108561230	108629497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855_108587119_108589320_108589540_108589987_108590142_108594135_108594314_108597079_108597151_108604262_108604397_108604845_108604952_108606231_108606389_108607978_108608096_108608202_108608326_108609059_108609202_108609712_108609850_108610179_108610403_108629356
88736	chr4	+	4312	23	NNC	ENSMUSG00000028405.10	novel	3832	21	NA	NA	403	6623	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	108.132074124866	10	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACATATGGAGTTTCTGG	2	True	NA	NA	False	NA	NA	NA	40143483	40204961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40143542_40145163_40145257_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553_40199016_40204848
88737	chrY	+	2723	8	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	242	5934	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	705.802973027667	1741	68	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGCAGATGTGTGTGT	5304	False	NA	NA	False	NA	NA	NA	90797358	90833668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrY_+_90797623_90798129_90798364_90798470_90798739_90798776_90798964_90799897_90800043_90803057_90804150_90804267_90804687_90833554
88738	chrM	+	1603	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	13	-71	13	71	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	14	False	NA	NA	False	NA	NA	NA	5340	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
88739	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	331	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
88740	chr17	+	3198	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	496	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	115.066285244636	7	74	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17342172	17367100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17342203_17356040_17356641_17362997_17363125_17363366_17363428_17364720
88741	chr3	-	5356	10	Intergenic	novelGene_3112	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	637	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGATCTTCCGGGCAGGC	NA	False	NA	NA	False	NA	NA	NA	41571293	41510166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41510253_41535627_41535708_41543368_41543456_41546115_41546273_41548198_41548389_41551048_41551260_41554454_41554631_41555807_41555916_41558901_41559426_41567556
88742	chr10	+	1750	2	NNC	ENSMUSG00000111919.2	novel	326	2	NA	NA	-17	3025	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	0	4	30	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTATATAAACCTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	88540439	88543962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_88540492_88542264
88743	chrM	+	422	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	722	0	722	0	mono-exon	FALSE	NA	NA	NA	NA	NA	288	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	117	False	NA	-74	True	NA	NA	NA	14866	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14900_15300
88744	chr17	+	3181	5	NIC	ENSMUSG00000091586.3	novel	2940	13	NA	NA	16716	0	intron_retention	FALSE	canonical	3	14	junction_4	11.8822346383161	28	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAAGAAAAAATGAGA	NA	False	NA	NA	False	NA	NA	NA	32742207	32749117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_32743247_32743552_32743620_32743808_32743939_32746814_32747333_32747690
88745	chr11	+	5328	4	Intergenic	novelGene_2334	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	919.238815542512	9	176	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTAGCCTGAGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	57445638	57451297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57448900_57448961_57449611_57449785_57450386_57450479
88746	chr6	+	4331	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	94	-2808	26	2808	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATGCATTAAATCCTGC	5966	False	NA	NA	False	NA	NA	NA	67244088	67264103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
88747	chr4	+	6318	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-3	3709	multi-exon	TRUE	non_canonical	0	0	junction_1	73.2731874562585	243	177	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCGTTTCTTATTGCTGAG	4107	False	NA	NA	False	NA	NA	NA	147314737	147421900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147393100_147393194_147409230_147409335_147413438_147413566_147415724_147416967_147417303
88748	chr2	-	3021	7	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5484	1763	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	477.901896022837	37	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAATTTTATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	177275487	177259233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177261349_177261430_177261788_177261871_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177275396
88749	chr1	+	4807	32	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	27	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	564.069004494508	24	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTATCTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	185095281	185160548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106361_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
88750	chr19	-	1838	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	412	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1098.49447398474	4	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCATTGCCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	15898361	15882494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15882652_15882782_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299
88751	chr10	-	2243	11	NIC	ENSMUSG00000019813.17	novel	2177	11	NA	NA	-77	-2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_10	64.5173620043473	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAAAGCCTGTGGAAATA	1	True	NA	NA	False	NA	NA	NA	41685944	41594843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685841
88752	chr3	-	2024	1	ISM	ENSMUSG00000040943.13	ENSMUST00000098603.8	9179	11	56073	22615	-7635	2241	mono-exon	FALSE	NA	NA	NA	NA	NA	7	41	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAGCGGGAACAAGCTC	NA	False	NA	NA	False	NA	NA	NA	133194078	133192054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_133192100_133194100
88753	chrX	+	698	4	NNC	ENSMUSG00000096788.9	novel	799	4	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_3	23.6690139681023	52	0	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	36712120	36723464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36712216_36712377_36712790_36720942_36720989_36723319
88754	chr2	+	4948	20	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-50728	-1569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	331.948866335609	3875	53	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATACCAACTTTTGCCTG	NA	False	NA	NA	False	NA	NA	NA	5799101	5875137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5799695_5800362_5800497_5803170_5803302_5809687_5809843_5812239_5812320_5815608_5815654_5826084_5826193_5827911_5828017_5838450_5838524_5846762_5846836_5849645_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
88755	chr19	-	4523	12	Fusion	ENSMUSG00000024666.7_ENSMUSG00000034371.10	novel	1590	5	NA	NA	-12463	0	intron_retention	FALSE	non_canonical	0	0	junction_5	72.2933646921513	250	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	9920	False	NA	NA	False	NA	NA	NA	10567189	10547843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447_10555448_10556345_10556439_10557826_10557925_10559659_10559858_10562542_10562753_10564052_10564210_10565185_10565340_10565885
88756	chr7	+	2726	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108582.10	2774	9	43	5	25	-5	multi-exon	FALSE	canonical	3	73	junction_1	203.174647778703	51	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAGGAGGTTTTTTTTTT	678	False	NA	NA	False	NA	NA	NA	4743208	4750508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4743818_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
88757	chr11	+	3688	23	FSM	ENSMUSG00000020456.18	ENSMUST00000101554.9	4106	23	32	386	30	-386	multi-exon	FALSE	canonical	3	18	junction_1	146.072267860866	8	85	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGCAGTGATGTTAGTCT	NA	False	NA	NA	False	NA	NA	NA	6241697	6306192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6241770_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
88758	chr11	+	4952	10	FSM	ENSMUSG00000010554.15	ENSMUST00000141755.8	12584	10	-2	7634	-2	2997	multi-exon	FALSE	canonical	3	325	junction_5	30.3892443611141	556	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTTGTGGTATTATCTT	8492	False	NA	NA	False	NA	NA	NA	74661653	74711717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
88759	chrM	-	1458	3	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGATGGCATATTGGTAA	-63	True	NA	NA	False	NA	NA	NA	11541	9888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10514_10590_11312_11429
88760	chr3	+	2040	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	3	0	3	0	multi-exon	FALSE	canonical	3	66	junction_1	36.8117839559091	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6599	False	NA	NA	False	NA	NA	NA	108561231	108586156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
88761	chr8	+	3124	5	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-10	0	intron_retention	FALSE	canonical	3	991	junction_2	54.2833998566781	117	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	NA	False	NA	NA	NA	86026541	86034700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_86026622_86027737_86030081_86031837_86031951_86032845_86032948_86034214
88762	chr5	-	2304	7	NNC	ENSMUSG00000040731.14	novel	2367	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	801.478720172213	2	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATGCTTGTCTTTCTGG	2199	False	NA	NA	False	NA	NA	NA	134668182	134648730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_134650503_134650802_134650839_134650882_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
88763	chr2	+	6782	14	Fusion	ENSMUSG00000082724.4_ENSMUSG00000078872.10	novel	948	4	NA	NA	-51	417399	multi-exon	TRUE	non_canonical	0	0	junction_2	55.2927657187484	585	94	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCATTCCAGTAACTTAC	NA	False	NA	NA	False	NA	NA	NA	176766061	177251523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_176766152_176775445_176775498_176776035_176776163_176776368_176776430_176778106_176778585_176832228_176832973_176837690_176838082_177002782_177003004_177075682_177079508_177079591_177079802_177080952_177081013_177081217_177081346_177086400_177086750_177251477
88765	chr4	+	6507	10	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-7	10831	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	40.4532957347417	197	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAACACAATAAAAGCAATC	NA	False	NA	NA	False	NA	NA	NA	147637726	147680486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290_147670325_147670654_147672013_147678310_147678463_147678638_147678978_147679052_147679219_147679262_147679342_147679449
88766	SIRV6	+	1154	8	FSM	SIRV6A	SIRV602	574	8	-37	-543	0	-2	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	16	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCTAGAAGACCGGGAGTAT	NA	False	NA	NA	False	NA	NA	NA	1087	11822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
88767	chr2	-	3157	5	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-8	1735	combination_of_known_junctions	FALSE	canonical	3	253	junction_4	344.203700590217	488	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTGTCTGTCCATC	2329	False	NA	NA	False	NA	NA	NA	177270011	177259261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
88768	chr7	+	3054	18	NNC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	5578	1	intron_retention	FALSE	canonical	2	13	junction_2	14.1051415200642	205	48	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTAAAAAATTTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	30164727	30186649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_30165307_30165433_30165607_30166560_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
88769	chr15	-	2598	12	FSM	ENSMUSG00000050891.11	ENSMUST00000228538.3	915	12	30	-1713	-3	670	multi-exon	FALSE	canonical	3	68	junction_6	18.2181455270914	674	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGACATTAATACAGGGTC	NA	False	NA	NA	False	NA	NA	NA	58805546	58771109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
88770	chr7	+	5568	12	NNC	ENSMUSG00000025485.14	novel	2577	11	NA	NA	-3548	-79	intron_retention	FALSE	non_canonical	0	0	junction_1	98.9384147707824	991	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGACAGGATGCCAAGTT	NA	False	NA	NA	False	NA	NA	NA	140433321	140443564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140434735_140434986_140435081_140436135_140437468_140437757_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
88771	chrM	+	1017	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	127	0	127	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	125	False	NA	4	True	NA	NA	NA	14271	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14300_15300
88772	chr7	-	1352	5	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5833.37029512099	7853	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGTATGCAATTATT	8419	False	NA	NA	False	NA	NA	NA	99132861	99127102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128522_99131500_99131562_99131776_99131908_99132798
88773	chr1	-	8988	13	Antisense	novelGene_ENSMUSG00000088363.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	73	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAACCTGAGTGGGCTGCG	NA	False	NA	NA	False	NA	NA	NA	118612894	118555682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_118555827_118559965_118560080_118581491_118581555_118584097_118584249_118586735_118586847_118589707_118589800_118592486_118592538_118592627_118592726_118593848_118593935_118596358_118596464_118597117_118597260_118603302_118603355_118605115
88774	chrM	+	2145	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	533	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2718_3189
88775	chr19	+	5362	41	NNC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	3	36631	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.514152340802	723	19	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGCACAAGTCTATTAC	4132	False	NA	NA	False	NA	NA	NA	41921921	41969174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020_41933022_41933096_41933199_41933768_41933827_41933896_41934063_41934171_41934255_41935355_41935546_41936129_41936188_41936655_41936755_41937889_41938019_41938205_41938276_41938418_41938523_41939190_41939291_41940845_41941004_41942109_41942257_41942354_41942453_41942903_41942985_41943169_41943298_41943556_41943638_41943859_41944013_41944261_41944403_41944949_41945029_41945582_41945657_41946298_41946384_41951238_41951300_41951387_41951518_41951839_41951910_41952301_41952382_41952759_41952843_41954652_41954752_41958139_41958191_41969076
88776	chr17	-	939	1	FSM	ENSMUSG00000117438.2	ENSMUST00000234808.2	885	1	-78	24	-78	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	4	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAGCCACCACTGAGTG	NA	False	NA	NA	False	NA	NA	NA	82718326	82717387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_82717400_82718300
88777	chr2	+	6200	11	Intergenic	novelGene_2845	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1286	110	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACATGAGCACCACCCTT	NA	False	NA	NA	False	NA	NA	NA	176982356	177599190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_176982365_176990619_176990706_176990891_176991398_177003384_177004185_177471524_177471914_177493249_177493400_177585798_177586291_177586626_177590022_177590227_177590356_177595473_177595530_177599000
88778	chr3	+	6454	20	FSM	ENSMUSG00000028034.16	ENSMUST00000166984.8	6523	20	67	2	-3	-2	multi-exon	FALSE	canonical	1	416	junction_13	269.035426927065	1641	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATGAGTGTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	151916125	151942461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
88780	chr11	+	2251	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	29	-1238	-7	1238	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	342	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCATATGAAGTGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	51510590	51515779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
88781	chr4	+	5156	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4864	61872	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.333151382607	3321	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTTGGTAAATTACT	NA	False	NA	NA	False	NA	NA	NA	147394994	147480063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409276_147409335_147413438_147413566_147415724_147416502_147476021
88782	chrX	+	3177	13	NNC	ENSMUSG00000031065.15	novel	3270	16	NA	NA	-946	0	intron_retention	FALSE	canonical	0	0	junction_1	469.138838724743	657	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTGGTTATAAATCATCAA	2012	False	NA	NA	False	NA	NA	NA	20559575	20566119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20559771_20560278_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
88783	chr11	+	741	4	FSM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	-9	0	-1	0	multi-exon	FALSE	canonical	3	8302	junction_3	2031.83972465022	2516	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2380	False	NA	NA	False	NA	NA	NA	101333262	101336355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101333632_101334326_101334497_101336045_101336157_101336264
88784	chr2	+	1867	11	NNC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3478.37078098353	385	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7475	False	NA	NA	False	NA	NA	NA	75489604	75496465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493264_75493977_75494059_75495371_75495495_75495577_75495646_75495741
88785	chr10	-	2269	11	NIC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_10	60.7736785129878	171	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	88	False	NA	NA	False	NA	NA	NA	41685905	41594836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685783
88786	chr6	+	2342	4	NNC	ENSMUSG00000040370.14	novel	1618	4	NA	NA	3	313	intron_retention	TRUE	canonical	0	0	junction_1	145.785992315982	12	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCTACCACCATCCCAAA	NA	False	NA	NA	False	NA	NA	NA	145156884	145162978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145156974_145160247_145160511_145160909_145160998_145161076
88787	chr9	-	2165	11	NNC	ENSMUSG00000039048.16	novel	2289	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_3	55.0422564944425	210	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122255	35115503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35116420_35116600_35116706_35116884_35116987_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
88788	chr2	-	4312	3	Fusion	ENSMUSG00000078869.3_ENSMUSG00000078870.10	novel	1113	4	NA	NA	-5239	-585	intron_retention	TRUE	non_canonical	0	0	junction_1	0	39	56	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATAAGCGAACACATACAGG	NA	False	NA	NA	False	NA	NA	NA	176964068	176885734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_176886074_176957403_176961327_176964018
88789	chr1	+	6898	7	NNC	ENSMUSG00000037432.16	novel	1723	12	NA	NA	1974	23144	intron_retention	FALSE	non_canonical	0	0	junction_1	0	680	57	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAAAGCCCGCCCCGTG	NA	False	NA	NA	False	NA	NA	NA	36457942	36484335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_36464036_36467179_36467298_36467380_36467543_36477830_36477913_36478688_36478808_36482571_36482688_36484127
88790	chr2	+	4984	36	NNC	ENSMUSG00000051329.14	novel	5684	37	NA	NA	2170	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_32	113.50472434652	722	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTGTATATTAAGATTT	NA	False	NA	NA	False	NA	NA	NA	90509728	90566670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90555991_90560036_90560165_90563124_90563251_90563449_90563555_90565758
88792	chr8	-	7549	4	ISM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	9639	2	-1489	0	3prime_fragment	FALSE	canonical	3	159	junction_3	165.724671267336	21	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATCTGTCTCTGAAACTG	2626	False	NA	NA	False	NA	NA	NA	11676115	11661584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261
88793	chr10	+	2012	8	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	13	544	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	37.3625371685793	354	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAAACCATAGACCATTT	NA	False	NA	NA	False	NA	NA	NA	22034480	22060360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_22034618_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
88794	chr8	-	2520	4	NNC	ENSMUSG00000053693.17	novel	4821	14	NA	NA	1196	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4.71404520791032	343	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTGAGATTCTTGGGG	NA	False	NA	NA	False	NA	NA	NA	85649547	85638542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85639871_85639948_85640156_85647020_85647132_85648673
88795	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	452	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
88796	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
88797	chr7	+	3356	8	NNC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-9	1959	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	111.943681175411	627	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTAAGACACCATTTAATC	NA	False	NA	NA	False	NA	NA	NA	132212357	132310108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320_132308288_132308512
88798	chr4	+	2335	2	ISM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	1613	20	-241	-20	3prime_fragment	FALSE	canonical	3	913	junction_1	0	520	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTGACCTTTAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	134652515	134654962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_134654130_134654241
88799	chr2	+	3693	11	FSM	ENSMUSG00000026977.18	ENSMUST00000102747.8	2271	11	-118	-1304	42	66	multi-exon	FALSE	canonical	3	14	junction_1	141.271405457722	3	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTTATTTCATACAATG	NA	False	NA	NA	False	NA	NA	NA	60040298	60079621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_60040429_60055113_60055215_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
88800	chr2	+	2211	11	NNC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	0	380	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3478.37078098353	4	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGACTGGCTGGCATGC	7475	False	NA	NA	False	NA	NA	NA	75489604	75496845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493264_75494013_75494059_75495371_75495495_75495577_75495646_75495741
88801	chr17	+	2681	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	16	-97	intron_retention	FALSE	canonical	0	0	junction_6	1088.51848399556	68	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGGTTTCTCTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	13135284	13143857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13139345_13139626_13139754_13140991_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
88802	chr3	+	1926	1	Antisense	novelGene_ENSMUSG00000040943.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTCCATTATCACTTAGT	NA	False	NA	NA	False	NA	NA	NA	133192061	133193987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_133192100_133194000
88804	chr2	-	2363	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	172	7	19	1	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGCTCCATTGCTTTT	3804	False	NA	NA	False	NA	NA	NA	154734683	154713336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
88805	chr11	-	5630	2	Intergenic	novelGene_2305	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCTTACTAGTTAACTT	NA	False	NA	NA	False	NA	NA	NA	57451228	57445548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450372_57450421
88806	chr15	-	1875	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACCCCTCGGGGCGTTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22703126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704574_22704667
88807	chr6	-	544	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	-27	0	-27	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	338	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	115785735	115782465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
88808	chr1	-	4377	16	Intergenic	novelGene_425	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGGCTGCGGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	118608043	118555675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118555832_118559970_118560122_118580028_118580106_118580596_118580703_118581443_118581550_118584094_118584249_118586735_118586847_118589707_118589800_118592486_118592538_118592627_118592717_118593840_118593935_118596358_118596464_118597117_118597260_118603302_118603355_118605115_118606656_118606692
88809	chr14	+	4798	7	NNC	ENSMUSG00000091472.3	novel	2011	7	NA	NA	-460	2726	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	119	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGACTGTACAGAGTATGG	5471	False	NA	NA	False	NA	NA	NA	15154263	15178851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_15154381_15159475_15159627_15169415_15169543_15170282_15170446_15171398_15171531_15172205_15172399_15174936
88810	chr2	+	3367	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	2661	intron_retention	FALSE	canonical	3	453	junction_1	106.871677986057	137	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGTCTTTTGTTATAA	NA	False	NA	NA	False	NA	NA	NA	135488443	135496644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417
88811	chr16	+	3618	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	-72	3	-7	-3	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	1021	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACGCTAGACTTGATTTG	NA	False	NA	NA	False	NA	NA	NA	18317565	18385426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
88812	chr12	-	1027	6	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	10789	junction_3	2301.5609138148	14	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685878	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28681193_28681622_28681774_28683766_28684352_28685414_28685487_28685578_28685663_28685854
88813	chr2	-	2339	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-505	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	196.592795576866	5	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTGTGCAAACTCCCCT	NA	False	NA	NA	False	NA	NA	NA	165720862	165669118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165720709
88814	chr15	-	1562	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	32	948	32	424	multi-exon	FALSE	canonical	3	251	junction_5	12.0432553738597	363	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGCCCACAGGCAGTA	460	False	NA	NA	False	NA	NA	NA	81810409	81800177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
88815	chr1	+	1927	2	Genic_Genomic	ENSMUSG00000101188.2	novel	1218	1	NA	NA	-207	556	multi-exon	FALSE	canonical	0	0	junction_1	0	5	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	60742883	60744864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_60744743_60744796
88816	chr1	+	1208	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	12	-4	-12	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454443	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
88817	chr4	+	3084	10	FSM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	15	711	6	-711	multi-exon	FALSE	canonical	3	1075	junction_8	117.532764016184	895	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTACCATGTTTAACTT	-3	True	NA	NA	False	NA	NA	NA	55350057	55391526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
88818	chr9	-	749	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	33	-14	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	459	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
88819	chrM	-	1585	2	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAAGAAGGTAGATGGCA	-66	True	NA	NA	False	NA	NA	NA	11544	9897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10514_10575
88820	chr7	-	1786	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	4	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	5652.65429540259	23	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCATGAGTATGCAATTAT	8427	False	NA	NA	False	NA	NA	NA	99132853	99127103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131555_99131798_99131908_99132798
88821	chr4	+	2702	6	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1817	1174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	33.8998525070538	4787	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATGCAATTATGTCCATC	2765	False	NA	NA	False	NA	NA	NA	147233133	147266210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147233279_147249797_147249867_147260303_147260362_147261203_147261331_147262781_147263629_147264754
88823	chr3	-	5455	11	Intergenic	novelGene_3115	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	944	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAGAGGTAGCAGGCGAG	NA	False	NA	NA	False	NA	NA	NA	41571293	41510225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41510253_41535627_41535708_41543368_41543498_41546117_41546273_41548198_41548389_41551048_41551260_41554454_41554631_41555807_41555916_41558901_41559426_41564236_41564354_41567555
88824	chr3	-	5010	18	Antisense	novelGene_ENSMUSG00000027668.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	751	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCGTCAGGGCGCTCGCG	NA	False	NA	NA	False	NA	NA	NA	32634006	32583786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_32583841_32586042_32586164_32588384_32588521_32592416_32592580_32596949_32597078_32598213_32598324_32600735_32600845_32608303_32608456_32609620_32609689_32615611_32615734_32617158_32617286_32617521_32617629_32617941_32618044_32618223_32618453_32622403_32622558_32623635_32623834_32628382_32628516_32631209
88825	chr10	-	2042	15	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	4	-2	intron_retention	FALSE	canonical	3	1936	junction_8	235.925154596598	13	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCCCTTAATGTCTTACT	NA	False	NA	NA	False	NA	NA	NA	116899715	116886912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
88826	chr11	-	5847	22	FSM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	46	1	46	-1	multi-exon	TRUE	canonical	3	682	junction_21	133.681077140662	408	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTGCTGCTTCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	97078661	97050540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
88827	chr1	-	1033	4	FSM	ENSMUSG00000060743.13	ENSMUST00000161308.8	2841	4	75	1733	-10	132	multi-exon	FALSE	canonical	3	2337	junction_3	156.5907617539	1052	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTCTGGTCTTTATTA	NA	False	NA	NA	False	NA	NA	NA	180641122	180630129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_180630771_180637681_180637836_180639363_180639515_180641035
88828	chr17	-	901	2	Genic_Genomic	ENSMUSG00000117438.2	novel	885	1	NA	NA	-76	66	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	82718324	82717297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_82717655_82717780
88829	chr16	-	564	1	Intergenic	novelGene_3735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
88830	chr13	-	1810	8	NNC	ENSMUSG00000021477.10	novel	1971	8	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	478.439342113117	8	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCAGTCTCAAGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	64518120	64511032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515701_64515965_64516053_64516841_64516979_64518049
88831	chr13	+	4908	12	Antisense	novelGene_ENSMUSG00000114343.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	20.5072049422991	2	71	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGACATTCTGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	66487350	66612103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66487642_66487893_66489001_66490607_66490669_66490864_66490958_66574947_66574973_66577777_66580290_66581477_66581539_66581738_66581866_66589267_66589495_66609950_66610037_66610237_66610441_66611988
88832	chr7	+	1412	9	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2426	-18066	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	648	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTCAGCTGGGTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	126394413	126398335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505_126396720_126396814_126396953_126398220
88833	SIRV8002	+	8000	1	FSM	SIRV8002A	SIRV8002	8000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	825	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV8002_+_0_8000
88834	chr6	+	2136	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2048.1074190579	2	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	NA	False	NA	NA	NA	122684602	122691592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688768_122689591_122689675_122690100
88835	chr9	+	745	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-211	-44	211	mono-exon	FALSE	NA	NA	NA	NA	NA	56	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAGCAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
88836	chr19	-	691	4	Antisense	novelGene_ENSMUSG00000024661.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCATGGTGGCGGCGGGG	2179	False	NA	NA	False	NA	NA	NA	9962455	9960240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_9960347_9961543_9961690_9961921_9962050_9962144
88837	chr16	+	4043	7	Antisense	novelGene_ENSMUSG00000116624.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	429	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGACCCGCCCCTTTCCG	NA	False	NA	NA	False	NA	NA	NA	35131504	35184340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_35134660_35139175_35139242_35149869_35149987_35167971_35168159_35169192_35169365_35181930_35182128_35184191
88838	chrM	+	939	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	16	0	16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTGTAGCTTAATATTA	13	False	NA	-9	True	NA	NA	NA	85	1024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_100_1000
88839	chr10	-	6663	13	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	25	193	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	59.2754282050234	364	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTCATTCTGTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	62728740	62648207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649192_62649302_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62728473
88840	chr6	-	5163	18	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	271	11371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	226.202469246968	1099	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTGGGGGGAGGTGGT	NA	False	NA	NA	False	NA	NA	NA	49190824	49050785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49051035_49052016_49052198_49059777_49059860_49061435_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49190578
88841	chr7	+	1360	6	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	1840	0	-16	0	3prime_fragment	FALSE	canonical	3	7665	junction_2	464.880801926687	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46498394	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
88842	chr13	-	5295	6	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-19385	4667	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.506221019811	33	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGCGTTGTTGCATCAAG	NA	False	NA	NA	False	NA	NA	NA	65787442	65758970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65761711_65761787_65763646_65763699_65763903_65764103_65764231_65765670_65765887_65787291
88843	chr7	+	4796	4	Antisense	novelGene_ENSMUSG00000108731.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	138	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGATCAGCT	NA	False	NA	NA	False	NA	NA	NA	26583168	26711424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_26583566_26583787_26583944_26584042_26585503_26708641
88845	chr8	+	3308	13	NNC	ENSMUSG00000060038.15	novel	1097	7	NA	NA	-19	5538	intron_retention	FALSE	non_canonical	0	0	junction_7	129.058772141481	15	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGTAACATTATTATTGT	NA	False	NA	NA	False	NA	NA	NA	85798910	85807329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562_85801972_85802450_85802565_85802650_85802761_85802844_85802914_85806209_85806339_85806420_85806855_85806941
88847	chr19	+	4428	7	Fusion	ENSMUSG00000025202.9_ENSMUSG00000025203.7	novel	3489	6	NA	NA	12141	-11	multi-exon	TRUE	non_canonical	0	0	junction_1	1285.19181447751	7	36	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCAAAATGTCTCGTG	574	False	NA	NA	False	NA	NA	NA	44203848	44295292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_44204023_44283524_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44292414_44292683
88848	chr17	+	1840	7	FSM	ENSMUSG00000024160.17	ENSMUST00000120943.8	1949	7	109	0	30	0	multi-exon	FALSE	canonical	3	47	junction_1	56.1921307262463	406	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	NA	NA	NA	25105762	25111123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
88850	chr6	+	2027	7	Antisense	novelGene_ENSMUSG00000002870.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGGAGAAAAAGTCTGCC	NA	False	NA	NA	False	NA	NA	NA	88865391	88874499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_88866187_88866768_88866905_88868654_88868865_88868959_88869178_88869926_88870193_88870324_88870496_88874268
88851	chr6	+	3807	14	NNC	ENSMUSG00000029815.13	novel	2819	4	NA	NA	2638	126698	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	49	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCCGACTCAAGGACAAGG	54	False	NA	NA	False	NA	NA	NA	49062156	49190383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_49064374_49064700_49064815_49065362_49065495_49067908_49067987_49071075_49071193_49081109_49081234_49082503_49082640_49084275_49084401_49085859_49085995_49094085_49094368_49111628_49111688_49111776_49111831_49145401_49145452_49190199
88852	chrX	-	3785	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	-21	-117	-21	117	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	1	101	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAAGGCATTTTCTC	NA	False	NA	NA	False	NA	NA	NA	93256336	93232195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
88853	chr15	+	2554	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	63	304	-13	-304	multi-exon	FALSE	canonical	3	321	junction_1	13	1372	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATCCATATTTGAGAGTA	NA	False	NA	NA	False	NA	NA	NA	51740887	51747706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_51741107_51744411_51744587_51745546
88854	chr9	+	971	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	116	851	3	-41	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGGAAAAAAGATGGAAGGA	NA	False	NA	NA	False	NA	NA	NA	119956870	119960584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
88855	chr17	+	3474	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	-3356	554	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTCGCCCTGCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	40153887	40159646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40154904_40157188
88856	chr9	+	1029	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	810	-1	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	143	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
88857	chr10	-	1120	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	-266	-321	0	-3	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGCCATGTCGGAATG	NA	False	NA	NA	False	NA	NA	NA	80634394	80631938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
88858	chr4	-	2616	7	NNC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	-6	intron_retention	TRUE	canonical	0	0	junction_1	409.190834316812	7	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATATGTGTCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	148711222	148701325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148703002_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
88859	chr16	+	3068	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	-67	-880	-67	880	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	711	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10229744	10243172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
88860	chr7	-	3007	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.188852574577511	32	32	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAAGGGCGGGGGCCTGC	9273	False	NA	NA	False	NA	NA	NA	13045351	13012751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016462_13019176_13019270_13020530_13020608_13022581_13022685_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
88861	chr9	+	616	2	Genic_Genomic	ENSMUSG00000062933.8	novel	490	1	NA	NA	-38	213	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	96777672	96778413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_96777884_96778008
88862	chr7	+	898	2	Genic_Genomic	ENSMUSG00000081491.2_ENSMUSG00000078380.2	novel	456	1	NA	NA	-61	12	multi-exon	FALSE	non_canonical	0	0	junction_1	0	354	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGCTAATTCTAAATATACA	NA	False	NA	NA	False	NA	NA	NA	33875075	33950930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_33875494_33950450
88863	chr2	+	988	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-6	-17	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	2458.10208087459	11	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAGAAGCAAACCCAGTG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32853508_32853596_32853752_32853866_32854002
88864	chr4	+	4092	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36402	773	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7	50	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	145136907	145178231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145137045_145138756_145138855_145173259_145173342_145174456
88865	chrX	+	2499	12	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	90	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_9	1051.63693731909	10590	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473250	100492197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
88866	chr7	-	2001	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	88	82	0	-82	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	946	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGCAGTTTTAATC	NA	False	NA	NA	False	NA	NA	NA	117728797	117718195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
88867	chr3	-	3075	9	Antisense	novelGene_ENSMUSG00000118506.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24913	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89973360	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966108_89968944_89969424_89970513_89971861_89972813
88868	chr6	-	4159	11	NNC	ENSMUSG00000029826.15	novel	3400	9	NA	NA	-612	882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.0586541884867	28	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTGCACATAAGATAAAAAT	9712	False	NA	NA	False	NA	NA	NA	38332150	38291720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38291849_38292023_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849_38331470_38332029
88869	chr17	-	1628	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	79	942	-10	742	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	6	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGGGTAAATGGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	36149119	36145754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
88870	chr8	-	3297	13	NIC	ENSMUSG00000039431.17	novel	2488	14	NA	NA	-7	936	combination_of_known_junctions	FALSE	canonical	3	4	junction_12	79.1157731148192	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTTATAACAGTACTTT	NA	False	NA	NA	False	NA	NA	NA	41087809	41003199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41087740
88871	chr2	+	836	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2383	-4	intron_retention	FALSE	canonical	3	26	junction_3	270.278560008004	99	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAAACTCTGAGCCCAA	NA	False	NA	NA	False	NA	NA	NA	135488443	135493979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135492537_135492672_135493417
88872	chr17	+	1950	3	NNC	ENSMUSG00000023067.15	novel	1172	2	NA	NA	355	-2	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	570.5	3	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATAATGTCTTGTCATTA	5014	False	NA	NA	False	NA	NA	NA	29313109	29319694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29313242_29317370_29317812_29318317
88873	chr3	+	2083	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	148	-1	23	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	246	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTTGACTTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	89986994	90008209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
88874	chr1	+	1986	5	NNC	ENSMUSG00000025967.17	novel	681	5	NA	NA	0	-13	intron_retention	FALSE	non_canonical	0	0	junction_4	1440.68653339302	57	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAAAAATACATCACA	NA	False	NA	NA	False	NA	NA	NA	63216288	63219632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63217725_63217990_63218058_63218406_63218533_63218616_63218808_63219466
88875	chrM	+	1011	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14805_14937
88876	chr2	+	2178	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	-46	19	-46	-19	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	179	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATCATTTATTAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	166857183	166867714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
88877	chr11	+	2845	13	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	-2	173	intron_retention	FALSE	canonical	3	11	junction_2	65.9917924189567	190426	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	NA	False	NA	NA	NA	29476444	29495452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29476844_29479928_29480155_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
88878	chr9	+	4845	31	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	869.669151012166	6	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569739	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407_72654810_72655309_72655984_72656024
88879	chr2	+	3431	8	NNC	ENSMUSG00000078877.12	novel	2505	4	NA	NA	-53	1476	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	36.2311175310812	79	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGTGTAGGAGCTTGGA	NA	False	NA	NA	False	NA	NA	NA	176493972	176504492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176494029_176499154_176499282_176499487_176499549_176500702_176501194_176501445_176501695_176501782_176502320_176502486_176503969_176504064
88880	chr7	-	2889	7	FSM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	281	-117	-127	117	multi-exon	FALSE	canonical	3	246	junction_4	21.202725191719	564	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCTTTGCAGATTCATA	9860	False	NA	NA	False	NA	NA	NA	105385707	105380819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_105382351_105382558_105382656_105382738_105382846_105382974_105383105_105383206_105383661_105383896_105384264_105385504
88881	chr17	+	2056	1	Intergenic	novelGene_210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTGTGGTTTGGAGGGC	NA	False	NA	NA	False	NA	NA	NA	40153888	40155944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
88882	chrM	+	1038	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	106	0	-106	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATCATTGGCCAACT	-2	True	NA	87	True	NA	NA	NA	14144	15182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15200
88883	chr10	-	5224	7	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	140	-8765	combination_of_known_junctions	FALSE	canonical	3	109	junction_1	54.7174560812178	384	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTGCTTGAGGCCCTA	NA	False	NA	NA	False	NA	NA	NA	62728625	62657891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62728473
88884	chr16	+	1754	10	FSM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	189	0	0	multi-exon	FALSE	canonical	3	563	junction_3	486.088189935799	45	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
88885	chrX	+	4205	4	Antisense	novelGene_ENSMUSG00000092787.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	423	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAGAAGGGGACAGCGAC	NA	False	NA	NA	False	NA	NA	NA	55630871	55643400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_55634663_55636436_55636544_55640751_55640803_55643144
88886	chr11	-	3510	18	NNC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	39	522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	118.865601171527	723	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATTTTTTAAAAGAAGAAAA	1169	False	NA	NA	False	NA	NA	NA	107080139	107056966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064494_107066431_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
88887	chr15	-	3857	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	9795	False	NA	NA	False	NA	NA	NA	22705095	22699821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700966_22702289_22704588_22704680
88888	chr11	-	1605	5	NNC	ENSMUSG00000016559.15	novel	2514	6	NA	NA	4	-330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5882.00448401733	14	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915336	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914228_115914291_115914362_115914450_115914605_115914707_115914846_115915204
88889	chr4	-	4249	10	Intergenic	novelGene_2130	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	105	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAACCGCGGAACTTCCC	NA	False	NA	NA	False	NA	NA	NA	147717205	147216497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147216640_147447257_147447359_147576875_147577002_147578825_147578931_147591968_147592096_147595207_147595336_147596800_147597103_147598109_147599159_147599242_147599529_147715322
88890	chr11	-	1837	6	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	4	-2	intron_retention	FALSE	canonical	0	0	junction_1	1347.16909109436	19	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGATTGTGTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	120472446	120468936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469817_120469920_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
88891	chr1	-	2893	6	NIC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	-9	-1528	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	968.155689959007	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAAAAACTGTTTC	NA	False	NA	NA	False	NA	NA	NA	13730779	13695081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_13697129_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
88892	chrM	-	1592	1	FSM	ENSMUSG00000064343.1	ENSMUST00000082394.1	71	1	-1098	-423	-1098	423	mono-exon	FALSE	NA	NA	NA	NA	NA	353	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGAAGGGGGCCCGGTTT	9990	False	NA	77	True	NA	NA	NA	4940	3348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_3300_4900
88893	chr18	+	8902	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26716	154	intron_retention	FALSE	canonical	3	417	junction_12	260.606810582959	982	88	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTACTATACATTCTTG	6369	False	NA	NA	False	NA	NA	NA	77126187	77241186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
88894	chr4	-	3010	11	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	-17	-11	intron_retention	FALSE	canonical	3	1320	junction_10	107.525624852869	269	101	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137523712	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
88895	chr5	-	3479	18	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	3	-86	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.979707388106	24	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCTTTTACAAGTCATG	NA	False	NA	NA	False	NA	NA	NA	31337485	31313950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31314745_31315679_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
88896	chr4	+	1011	8	FSM	ENSMUSG00000029003.12	ENSMUST00000105707.2	949	8	-70	8	-51	-8	multi-exon	FALSE	canonical	3	65	junction_6	213.795439137317	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTAACCAAACAGGATGAA	NA	False	NA	NA	False	NA	NA	NA	148225129	148230145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229582_148229654_148229828
88897	chr7	-	1413	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	94	4	10	-2	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	75	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGTCTGTTGTTCATGTC	NA	False	NA	NA	False	NA	NA	NA	126398332	126394409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
88898	chr18	+	1430	10	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	4	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1758.38718892423	62	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCGGGAATTTAATGCAGG	NA	False	NA	NA	False	NA	NA	NA	77861695	77870302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866238_77867619_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
88899	chr15	+	1328	1	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACAAGTGCTCCAGGCCT	78	False	NA	NA	False	NA	NA	NA	36771195	36772523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36771200_36772500
88900	chrX	-	3220	16	Fusion	ENSMUSG00000031388.15_ENSMUSG00000031387.15	novel	1418	11	NA	NA	-10	2	intron_retention	FALSE	canonical	2	3	junction_7	708.982319165216	1899	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAATTTGTGAATGTGC	NA	False	NA	NA	False	NA	NA	NA	72974408	72960499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_72961559_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361_72965530_72965719_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72974124_72974319
88901	chr1	-	2807	4	ISM	ENSMUSG00000026558.14	ENSMUST00000195443.6	738	6	2072	-2293	2072	-1051	3prime_fragment	FALSE	canonical	3	1001	junction_2	14.2672897060218	22	76	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGCACAACCTTGAACAC	NA	False	NA	NA	False	NA	NA	NA	167062332	167051502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260
88902	chr5	+	4685	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	-25	-556	-17	556	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	64	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGAGTTTTTATTAAG	1274	False	NA	NA	False	NA	NA	NA	145168507	145184668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
88903	chr4	+	3042	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066007.16	novel	4244	5	NA	NA	17	40725	multi-exon	TRUE	non_canonical	0	0	junction_1	84.6218479050011	553	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACGGAATCTTAATATTT	NA	False	NA	NA	False	NA	NA	NA	146093410	146255729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093548_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158_146254619_146254690
88904	chr5	-	4299	5	ISM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	42720	-2816	42112	-10	3prime_fragment	FALSE	canonical	3	1133	junction_2	39.7830051655226	1094	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACCCTCAGCAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	122597568	122591586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510
88905	chr3	+	3353	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	-131	1204	-131	-1204	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	944	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTCTTCCGCATGTTTAT	NA	False	NA	NA	False	NA	NA	NA	104545852	104564574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
88906	chr1	-	2958	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	-48	0	-48	0	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	1506	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	NA	False	NA	NA	NA	128287449	128259326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
88907	chr6	+	3457	9	Antisense	novelGene_ENSMUSG00000029826.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	248	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCAGACCTGGTGAGCG	8131	False	NA	NA	False	NA	NA	NA	38292602	38331596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_38293358_38296637_38296760_38302126_38302304_38306085_38306208_38308697_38308797_38309076_38310124_38313346_38313604_38317159_38317290_38330848
88908	chr8	-	7193	1	Intergenic	novelGene_1790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAATTGCCTTAGCTCCGT	NA	False	NA	NA	False	NA	NA	NA	129480241	129473048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_129473000_129480200
88909	chr4	-	3133	5	NNC	ENSMUSG00000040842.18	novel	3244	4	NA	NA	-1	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	163.790262225811	6	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCAGACATTTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	140867052	140840331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_140841602_140841667_140843176_140845837_140846093_140847634_140847685_140867002
88910	chr3	+	2013	9	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1123.46678160727	5	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986948	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90006993_90007102
88911	chr13	-	4889	6	Fusion	ENSMUSG00000113450.2_ENSMUSG00000113841.2	novel	2492	4	NA	NA	312	83375	multi-exon	TRUE	non_canonical	0	0	junction_1	15.6204993518133	13	64	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGATAGTCATGTGTC	9863	False	NA	NA	False	NA	NA	NA	62614295	62513755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62513817_62597009_62599173_62600616_62603008_62604500_62604562_62604746_62604867_62614202
88912	chr19	-	1704	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	64	340	64	-340	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGCAGCACTGGGCAGAGG	3827	False	NA	NA	False	NA	NA	NA	7017271	6998409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
88913	chr6	+	3069	15	FSM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	32	-172	-1	172	multi-exon	FALSE	canonical	3	31	junction_7	7.03816128585544	1045	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTACCTTTGAAGAAAGGA	1313	False	NA	NA	False	NA	NA	NA	72391322	72407867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
88914	chr16	+	2925	7	NNC	ENSMUSG00000022967.14	novel	468	2	NA	NA	3805	43487	intron_retention	FALSE	non_canonical	0	0	junction_6	75.6079066999977	397	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	91293341	91347816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91293396_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942_91304000_91347627
88915	chr2	-	1122	10	NNC	ENSMUSG00000027170.13	novel	1283	11	NA	NA	-15	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	677.054076290973	1	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGAAATTTGACT	2662	False	NA	NA	False	NA	NA	NA	104847403	104830013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836184_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
88916	chr4	-	3025	3	NIC	ENSMUSG00000029036.19	novel	2413	16	NA	NA	-211	-24	intron_retention	FALSE	canonical	3	832	junction_1	13.5	66	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAACTGTGACTGATTT	7088	False	NA	NA	False	NA	NA	NA	155834011	155825121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155825810_155830485_155831939_155833127
88917	chr16	-	946	2	FSM	ENSMUSG00000022760.18	ENSMUST00000232041.2	766	2	-12	-168	-9	-4	multi-exon	FALSE	canonical	3	19	junction_1	0	44	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTGCTGTTTGGCTTGG	7258	False	NA	NA	False	NA	NA	NA	17348928	17345945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_17346605_17348641
88918	chr11	-	2780	1	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACACGGTGATGGCAAACC	NA	False	NA	NA	False	NA	NA	NA	57952860	57950080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57950100_57952900
88919	chr18	+	681	4	Antisense	novelGene_ENSMUSG00000024346.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13946	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAGAGGCAAGCCGGAAAG	6100	False	NA	NA	False	NA	NA	NA	36537140	36587561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_36537516_36565360_36565442_36584130_36584299_36587504
88920	chr17	-	2467	15	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	1670	740	1641	99	3prime_fragment	FALSE	canonical	3	465	junction_13	59.7598937244636	73	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79242825	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003
88921	chr2	-	2367	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	36	1	at_least_one_novel_splicesite	FALSE	non_canonical	2	106	junction_8	5349.90986655354	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGCTCCATTGCTTTT	3821	False	NA	NA	False	NA	NA	NA	154734666	154713336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730012_154730281_154734609
88923	chr4	-	2418	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	65	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	615.845961206115	3	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137523630	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481333_137482395_137482512_137482940_137483061_137485889_137486044_137523552
88924	chrX	-	4901	7	Antisense	novelGene_ENSMUSG00000095494.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	114	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTTTCTCGTTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	28001036	27643976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_27644278_27644524_27646343_27959518_27959573_27996039_27997711_27997753_27997864_27998090_27998513_28000511
88925	chr8	-	3747	7	FSM	ENSMUSG00000014837.16	ENSMUST00000212922.2	3313	7	-434	0	20	0	multi-exon	FALSE	canonical	3	15	junction_6	9.72396809720988	125	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	NA	False	NA	NA	False	NA	NA	NA	106016116	106007040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015400
88926	chr16	-	685	7	NNC	ENSMUSG00000022956.12	novel	838	7	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2906.736223365	15	6	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGCGTGAGGAGCCTTGT	925	False	NA	NA	False	NA	NA	NA	91728461	91722106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91722280_91722424_91722516_91723346_91723422_91723740_91723871_91725786_91725898_91727241_91727293_91728407
88927	chr4	-	5244	26	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	169	812	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	78.5077219131978	817	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGACGGG	18	False	NA	NA	False	NA	NA	NA	41124286	41113614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119026_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
88928	chr15	-	4689	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088452.11	7266	16	-673	3250	-673	1319	multi-exon	FALSE	canonical	3	128	junction_15	89.8033901859439	300	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATGTGTTGCGATTTTTG	NA	False	NA	NA	False	NA	NA	NA	96541467	96472548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371
88929	chrM	+	1619	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-836	1	-836	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	59	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	-6	True	NA	NA	False	NA	NA	NA	7770	9389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9400
88930	chr13	+	6052	20	FSM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	34	5	34	-5	multi-exon	FALSE	canonical	0	0	junction_7	184.261632008595	947	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTGATGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	13612169	13686849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
88931	chr3	-	4160	28	NIC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	275	junction_1	225.006501963668	780	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3543	False	NA	NA	False	NA	NA	NA	89959786	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
88933	chr9	-	4910	25	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.59947894041409	71	100	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CATACCCATAATTTAAAAAA	6404	False	NA	NA	False	NA	NA	NA	72656911	72577238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72577399_72578511_72578584_72584594_72584687_72617668_72617823_72619446_72619548_72625546_72625667_72628582_72628699_72628776_72628944_72632298_72632364_72633691_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647514_72648914_72648964_72649932_72650041_72650819_72650917_72653686_72653759_72654404
88934	chr18	-	6205	4	Intergenic	novelGene_4513	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	64	199	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGACTCATAGTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	19641018	19517497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_19517571_19517677_19520946_19560622_19560995_19638526
88935	chr11	-	1650	6	NNC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	893.804989916704	17	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1865	False	NA	NA	False	NA	NA	NA	59119078	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59103153_59103284_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
88936	chr3	-	2409	8	Antisense	novelGene_ENSMUSG00000090005.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	134	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCCACCCCCTCCGCCA	NA	False	NA	NA	False	NA	NA	NA	89969741	89960136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966108_89967668_89968788_89969241
88937	chr19	-	3201	14	Antisense	novelGene_ENSMUSG00000015176.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.266469355010597	17	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCGGGTCGAGGGCGG	NA	False	NA	NA	False	NA	NA	NA	46073969	46064408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46064587_46067139_46067198_46067314_46067458_46067565_46067695_46068346_46068529_46069746_46069858_46069975_46070114_46070684_46070813_46070951_46071065_46071177_46071801_46071956_46072064_46072187_46072280_46072447_46073352_46073674
88938	chr16	-	5647	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	-59	-843	-59	843	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	819	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTTAAATATTAAATGACTA	NA	False	NA	NA	False	NA	NA	NA	8610231	8506615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
88939	chr7	+	3187	3	NNC	ENSMUSG00000050917.6	novel	3030	3	NA	NA	-5	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	361	6	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCAAGCACCTGTGTCT	7997	False	NA	NA	False	NA	NA	NA	144415117	144418974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_144415192_144415462_144415570_144415968
88940	chrM	-	748	1	Intergenic	novelGene_4282	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	118	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTAAATTTATGTACTCA	0	True	NA	-246	True	NA	NA	NA	16188	15440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrM_-_15400_16200
88941	chr8	+	3351	14	NNC	ENSMUSG00000031826.21	novel	3726	14	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_13	433.578586339944	4	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTTCTTGGTGTGC	8846	False	NA	NA	False	NA	NA	NA	120637571	120684298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321_120684126_120684236
88942	chr5	+	8014	26	Fusion	ENSMUSG00000042719.18_ENSMUSG00000029452.19	novel	5447	24	NA	NA	-3	8096	multi-exon	FALSE	non_canonical	0	0	junction_23	146.870195751214	23	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGCCGCCTCCGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	121536064	121590537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_121536126_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890_121581171_121582037_121583638_121585205_121585341_121590251
88943	chr11	+	1820	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	0	-73	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	7332	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
88944	chr16	+	4486	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	-4	5	-4	-5	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	1244	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGATTCAAAGTATTTGTT	NA	False	NA	NA	False	NA	NA	NA	43960211	43983724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
88945	chr2	-	480	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	465	1	-37	-1	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCTTCATGTTTTACA	NA	False	NA	NA	False	NA	NA	NA	38895171	38891592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
88946	chr4	-	1988	1	Genic_Genomic	ENSMUSG00000028431.12	novel	NA	NA	NA	NA	6898	1280	mono-exon	FALSE	NA	NA	NA	NA	NA	93	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAACTATGCAGGATTAG	6967	False	NA	NA	False	NA	NA	NA	56750387	56748399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_56748400_56750400
88947	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76586	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
88948	chr2	-	5285	12	FSM	ENSMUSG00000093752.2	ENSMUST00000138667.2	5288	12	2	1	2	-1	multi-exon	FALSE	canonical	2	6	junction_3	157.884464505636	1130	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTGCTTTTATTACACA	NA	False	NA	NA	False	NA	NA	NA	168072282	168022906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168027093_168029486_168029580_168031201_168031315_168052350_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
88949	chrM	+	1505	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	75	2	75	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTAGGGTGGCAGAGCCA	9	False	NA	4	True	NA	NA	NA	1168	2673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1200_2700
88950	chr1	-	723	6	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	-673	83	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	405.673464747203	2	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTATGAACCCAACGTGT	NA	False	NA	NA	False	NA	NA	NA	167065077	167053712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_167053923_167055194_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057
88952	chr5	-	4404	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	-59732	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	151.958896326735	1134	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCATTGCAGAGGAGC	NA	False	NA	NA	False	NA	NA	NA	31397220	31313361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331825_31397079
88953	chr2	-	2355	6	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	69	-28	intron_retention	FALSE	canonical	2	4	junction_1	13.5941163743731	48	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAATGTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166349922	166341988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166348119_166348706_166348871_166349381
88954	chr6	+	4224	19	Antisense	novelGene_ENSMUSG00002076184.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	626	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAATAGTTCCGGAAAGA	NA	False	NA	NA	False	NA	NA	NA	29123571	29164759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_29125526_29127798_29127899_29128426_29128688_29131268_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138637_29139550_29139628_29143554_29143665_29152282_29152359_29154755_29154893_29155025_29155186_29157063_29157141_29158170_29158264_29158847_29158922_29159654_29159750_29160035_29160194_29164488
88955	SIRV6	+	1393	9	NNC	SIRV6A	novel	1435	9	NA	NA	-1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9723.71523566867	403	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGGGAGTATACTTA	NA	False	NA	NA	False	NA	NA	NA	999	11827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1736_2470_2608_2771_2829_3106_3165_10724_10819_11031_11109_11205
88956	chrX	+	3314	6	NNC	ENSMUSG00000031198.5	novel	2562	5	NA	NA	-147	696	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	89.96132502359	1442	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCTGTGGTCAT	390	False	NA	NA	False	NA	NA	NA	74425857	74440761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915_74439012_74439102
88957	chrM	+	2608	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1026	0	1026	mono-exon	FALSE	NA	NA	NA	NA	NA	2	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAGAAATATGTCTGATA	-3	True	NA	22	True	NA	NA	NA	1093	3701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
88958	chr11	+	2077	7	NNC	ENSMUSG00000042569.14	novel	3277	7	NA	NA	-6	537	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	1012	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATCAAGCCACCACTATC	NA	False	NA	NA	False	NA	NA	NA	60721498	60749786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
88959	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	67	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
88960	chrM	-	844	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	292	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTCTCCTTAAATTTTAA	5379	False	NA	NA	False	NA	NA	NA	1023	179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1000
88961	chr1	+	4120	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	-12	5	-12	-5	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	531	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACCCTGCATTTTGCTC	82	False	NA	NA	False	NA	NA	NA	128171886	128207110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
88962	chr18	+	4986	7	NIC	ENSMUSG00000024525.8	novel	5054	8	NA	NA	-4	-1159	intron_retention	FALSE	canonical	3	1009	junction_2	97.2585329018602	24	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATGAGAAAACATTCAAGC	NA	False	NA	NA	False	NA	NA	NA	67422317	67454383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67450104_67451464
88963	chr1	+	1205	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	15	-4	-15	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	6885	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
88964	chr2	-	2315	11	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	-52	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	162.412468733161	10	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGTTGTGTTTAATTTA	NA	False	NA	NA	False	NA	NA	NA	165717749	165669043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624
88965	chr11	-	3332	3	NNC	ENSMUSG00000035455.13	novel	2807	3	NA	NA	28	-4	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	37	78	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTATGCTTTTGTAGTCTG	NA	False	NA	NA	False	NA	NA	NA	11758897	11750291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11753064_11755958_11756216_11758594
88966	chr15	+	3554	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	232.238672534116	6	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-39	True	NA	NA	NA	101982353	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101994994_101997123_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
88967	chr10	-	1055	4	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_3	509.183878596153	14	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	NA	False	NA	NA	NA	80634390	80631932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80632357_80632424_80632489_80632565_80632657_80633914
88968	chr3	+	3089	4	NIC	ENSMUSG00000028140.14	novel	1612	7	NA	NA	2	-3	intron_retention	FALSE	canonical	3	188	junction_2	14.3061758225833	6	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTAAAAAAAGAAAAAGAAC	8492	False	NA	NA	False	NA	NA	NA	94350633	94356012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_94350802_94350965_94352259_94353942_94354651_94355092
88969	chr9	+	1029	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	810	-1	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	3	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
88970	chr2	+	4218	13	NIC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-14	-6	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	43.5398923083443	2660	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAAATGTCCATGCAGCCT	NA	False	NA	NA	False	NA	NA	NA	152068781	152123766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152068953_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
88971	chr5	+	4514	25	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	46	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGAATTTCAGCGACCGG	208	False	NA	NA	False	NA	NA	NA	31298003	31337486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31299193_31302041_31302126_31302837_31302932_31303022_31303120_31303315_31303437_31311014_31311089_31311536_31311637_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323358_31323702_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331111_31331436_31331577_31331864_31337285
88972	chr19	+	5067	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	383	5	-19	-5	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	8	104	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAATGTCTCGTGGTGTTT	1450	False	NA	NA	False	NA	NA	NA	44282495	44295298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
88973	chr2	+	2727	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	381	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	651	False	NA	NA	False	NA	NA	NA	26279357	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286189_26286589
88974	chr5	+	3111	5	FSM	ENSMUSG00000023284.16	ENSMUST00000112528.8	3158	5	28	19	28	-19	multi-exon	TRUE	canonical	3	28	junction_1	12.7744862910412	14	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTCTATTTTAACCAGCA	1977	False	NA	NA	False	NA	NA	NA	110257985	110277641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110258184_110259762_110259933_110271625_110271747_110272218_110272312_110275112
88975	chrX	-	3011	2	NNC	ENSMUSG00000039231.19	novel	2707	4	NA	NA	-8149	249	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	191	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTAGCCCTGGCTGTCCT	1731	False	NA	NA	False	NA	NA	NA	7949148	7933398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7936245_7948983
88976	chr12	+	3158	2	Intergenic	novelGene_4383	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605039	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68607771_68609845
88977	chr17	-	4857	8	NNC	ENSMUSG00000073406.11	novel	1138	6	NA	NA	-25	2201	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	161.447660059771	106	101	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAACAGAATTGCCTGTC	NA	False	NA	NA	False	NA	NA	NA	36395140	36388805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36388875_36389057_36391216_36391515_36391578_36391869_36392008_36392133_36392435_36392630_36394401_36394587_36394858_36395051
88978	chr19	+	1855	3	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	458	-63	intron_retention	TRUE	canonical	0	0	junction_1	937.5	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTCTCCAATTTGT	NA	False	NA	NA	False	NA	NA	NA	47721100	47723964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47721192_47721288_47722351_47723262
88979	chr13	-	3281	15	NIC	ENSMUSG00000034617.8	novel	3861	15	NA	NA	-76	15	combination_of_known_junctions	FALSE	canonical	3	42	junction_14	91.4475705706024	14	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTCCAGTTAAGACTTCT	NA	False	NA	NA	False	NA	NA	NA	68730135	68709466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68729921
88980	chr3	+	7215	7	ISM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	-31	37	-2	3	intron_retention	FALSE	canonical	3	775	junction_5	69.3511595673305	28	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGTGTTGTTTATTAG	NA	False	NA	NA	False	NA	NA	NA	157239993	157253976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336
88981	chr1	-	3122	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	5	-1520	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_7	1081.48861882734	609	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTTTCTCATCTTT	NA	False	NA	NA	False	NA	NA	NA	13730765	13695073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13722991_13723145_13730552
88982	chr5	-	1101	7	Antisense	novelGene_ENSMUSG00000067274.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	807	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGGCCGCATGCCCGCGTG	NA	False	NA	NA	False	NA	NA	NA	115701574	115697573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115697597_115697843_115697948_115698799_115699062_115699155_115699302_115699385_115699576_115700482_115700623_115701338
88983	chr2	+	5045	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	2	-1406	2	1406	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	31	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGCATTGGGAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	166747980	166789715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
88984	chr12	-	9590	4	Intergenic	novelGene_4336	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2433	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGAGAAAGGTCTA	NA	False	NA	NA	False	NA	NA	NA	23923832	23748085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23754698_23916430_23917034_23921412_23922243_23922287
88985	chr10	-	3122	2	Intergenic	novelGene_3477	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	75	junction_1	0	380	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	74555798	74550615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74551462_74553522
88986	chr6	+	3005	8	NNC	ENSMUSG00000036371.7	novel	15474	8	NA	NA	-8	1649	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2405.6243535956	13	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAACCCCTTTATATGTTT	5858	False	NA	NA	False	NA	NA	NA	67243980	67262944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244181_67248288_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
88987	SIRV4	-	671	4	FSM	SIRV4A	SIRV403	670	4	-1	0	-1	0	multi-exon	FALSE	canonical	0	0	junction_3	3065.46367708958	108	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15123	8322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV4_-_8373_8629_8991_13672_13829_15019
88988	chr5	+	1161	6	NIC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	29	-1163	intron_retention	FALSE	canonical	3	11744	junction_1	1383.96869906801	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAACAAGTGAATCATCC	504	False	NA	NA	False	NA	NA	NA	129097294	129100224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129097343_129097591_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
88989	chr14	-	1632	11	ISM	ENSMUSG00000040472.16	ENSMUST00000169237.8	2547	16	2251	0	208	0	3prime_fragment	FALSE	canonical	3	454	junction_10	29.2567940827426	2	59	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55957382	55953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252
88990	chr7	+	3207	23	Intergenic	novelGene_3057	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	14	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCCGGAAGTCCCGCCCC	1727	False	NA	NA	False	NA	NA	NA	143110968	143153804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_143111743_143112863_143112948_143113381_143113445_143115594_143115663_143116696_143116781_143118722_143118803_143122051_143122126_143122675_143122860_143123136_143123237_143123568_143123674_143123756_143123891_143124280_143124407_143125219_143125336_143128251_143128372_143129654_143129746_143130324_143130460_143138377_143138535_143139435_143139537_143140153_143140247_143140839_143140934_143142231_143142319_143146146_143146398_143153718
88991	chr5	-	6894	2	Intergenic	novelGene_706	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	168	61	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAGGTCGCCTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	36403088	36395553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_36396324_36396964
88992	chr6	-	892	1	Antisense	novelGene_ENSMUSG00000063171.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGAGCAAGCGGAAACAC	NA	False	NA	NA	False	NA	NA	NA	148257096	148256204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_148256200_148257100
88993	chr16	-	2534	16	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	1573	7	NA	NA	-14	-10	multi-exon	FALSE	canonical	3	59	junction_6	387.8436913099	6	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTAAATTGTGTTGTC	6252	False	NA	NA	False	NA	NA	NA	38370598	38318718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
88994	chrM	+	2606	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	3	-1027	3	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	0	True	NA	25	True	NA	NA	NA	1096	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
88995	chr6	-	4562	12	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACAGGAGAAGCATCACAC	NA	False	NA	NA	False	NA	NA	NA	37945349	37920402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37920465_37922454_37922621_37926154_37926331_37928381_37928561_37930428_37930562_37933334_37933409_37933936_37934108_37934443_37934771_37935494_37935629_37937714_37937791_37941637_37941786_37942433
88996	chr5	+	4878	24	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	76	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTCTGAGTTCGAGGC	208	False	NA	NA	False	NA	NA	NA	31298003	31332410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31299193_31302041_31302126_31302837_31302932_31303022_31303120_31303315_31303437_31311014_31311089_31311536_31311637_31315488_31315598_31315689_31315840_31316404_31316543_31316781_31316862_31317039_31317210_31317291_31317433_31323225_31323358_31323702_31323733_31325041_31325150_31325329_31325445_31325589_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331111_31331436_31331577
88997	chr14	+	5520	2	Intergenic	novelGene_559	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTAACTTGAACACAACC	NA	False	NA	NA	False	NA	NA	NA	49839741	49846698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_49843317_49844753
88998	chr16	-	1315	4	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	-8	-41	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	175.075856575244	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGATGTTGAACTGTAAG	NA	False	NA	NA	False	NA	NA	NA	14135219	14117152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_14118074_14122317_14122452_14131679_14131878_14135157
88999	chr11	+	5214	3	NNC	ENSMUSG00000017548.16	novel	4303	15	NA	NA	13333	-31	intron_retention	TRUE	non_canonical	0	0	junction_1	965.5	738	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATATAAAGCTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	79899949	79924917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_79899961_79919054_79920173_79920832
89000	chrM	+	1035	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-75	-3	-75	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	252	False	NA	34	True	NA	NA	NA	2675	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
89001	chr1	-	2955	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-23	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	644.545043034232	42	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTCTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	20890507	20873195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885124_20886887_20887004_20887466_20887676_20888016_20888130_20890354
89002	chr15	-	7978	16	NNC	ENSMUSG00000023169.16	novel	3183	16	NA	NA	17	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	120.117609033813	567	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAAGTACTTCCGAGTC	NA	False	NA	NA	False	NA	NA	NA	96540076	96469308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522054_96538934
89003	chrX	+	2903	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	-73	-745	-23	736	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	54	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTGCTACGTGGATC	NA	False	NA	NA	False	NA	NA	NA	133618688	133623402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
89004	chr11	+	1710	1	NIC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	18	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62442300_62444000
89005	chrM	+	2550	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-968	0	968	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATTATGTATGTGACATA	-3	True	NA	22	True	NA	NA	NA	1093	3643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3600
89006	chr17	+	2587	7	ISM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	10330	4	5689	-4	3prime_fragment	FALSE	canonical	3	2616	junction_4	121.673972383397	5	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCATTTTTCCATTTTC	NA	False	NA	NA	False	NA	NA	NA	88292819	88298316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
89007	chr19	-	3145	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCAAGTCCATTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	22705271	22699753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773_22702547_22704705
89008	chr10	-	4436	8	Fusion	ENSMUSG00000110830.2_ENSMUSG00000038876.13	novel	4402	4	NA	NA	-6	-2128	multi-exon	FALSE	non_canonical	0	0	junction_1	80.3454277174628	589	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGCGCGGCGGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	29238049	29189575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_29189728_29193500_29193717_29198268_29198414_29207814_29207866_29210184_29210266_29220334_29223880_29230287_29230444_29237959
89009	chr19	+	802	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	-2	2	-2	-2	multi-exon	FALSE	canonical	3	1715	junction_6	72.3058703625708	14685	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGTGACTTGCTGTTA	7369	False	NA	NA	False	NA	NA	NA	3333057	3341199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
89010	chr11	-	1055	7	NNC	ENSMUSG00000025134.3	novel	3527	6	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1539.64614441111	783	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTGTCTGGTCCATC	4312	False	NA	NA	False	NA	NA	NA	120489185	120485334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460_120488593_120488930_120489027_120489104
89011	chr7	+	878	5	NIC	ENSMUSG00000019738.16	novel	819	6	NA	NA	-4	-22	intron_retention	FALSE	canonical	3	1146	junction_4	33.3391661563393	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTGTAATAAATGCCAGT	NA	False	NA	NA	False	NA	NA	NA	29931368	29932785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932544_29932709
89012	chr4	+	6493	8	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14228	179665	multi-exon	TRUE	non_canonical	0	0	junction_1	33.9429292928526	33	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTGGAAAAAAAGACGGCA	NA	False	NA	NA	False	NA	NA	NA	145159081	145357123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145173065_145173342_145176036_145176243_145176326_145180385_145262466_145262552_145268910_145268961_145269187_145269776_145355963
89013	chr11	-	3071	12	ISM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	18291	5	-17455	-5	3prime_fragment	FALSE	canonical	3	409	junction_10	43.7128118216544	2	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTGTGGGTGTGTCA	NA	False	NA	NA	False	NA	NA	NA	84002135	83969750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779
89014	chr11	-	854	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-78	-94	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9690.42204819905	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCCCCACGGGCTTTAC	6389	False	NA	NA	False	NA	NA	NA	69812094	69807639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69807738_69807990_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69812012
89015	chr15	+	5966	6	Antisense	novelGene_ENSMUSG00000022387.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1.6	217	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCGATTTCTATCTCCA	NA	False	NA	NA	False	NA	NA	NA	88592706	88614755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_88594893_88594998_88597128_88597496_88597626_88598084_88598221_88601108_88601266_88613526
89016	chr18	-	3723	11	Antisense	novelGene_ENSMUSG00000024576.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	269	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCGGGCGCTCTCTCCGT	2964	False	NA	NA	False	NA	NA	NA	61723388	61688334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61688943_61689571_61689680_61701333_61701459_61702531_61702630_61708475_61708619_61709575_61709655_61710246_61710322_61711735_61711837_61713401_61713521_61720494_61721655_61722281
89017	chr7	-	2768	6	FSM	ENSMUSG00000062797.15	ENSMUST00000078918.10	1053	6	-100	-1615	-1	441	multi-exon	FALSE	canonical	3	19	junction_4	509.123403508422	2156	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATAAATGTGTTCTGC	NA	False	NA	NA	False	NA	NA	NA	89590374	89566295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89579527_89579669_89584934_89585173_89590176
89018	chr15	-	1508	1	Genic_Genomic	ENSMUSG00000033837.6	novel	NA	NA	NA	NA	462	392	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTCCAAGTCTGGTATT	NA	False	NA	NA	False	NA	NA	NA	76553540	76552032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_-_76552000_76553500
89019	chr4	+	6156	13	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	82543	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	16.2112786527021	21	93	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAACACAATAAAAGCAATC	NA	False	NA	NA	False	NA	NA	NA	147576867	147680486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147596801_147597378_147597462_147597610_147597943_147598100_147599018_147599725_147600065_147601251_147601516_147601666_147601883_147603284_147678665_147678978_147679052_147679219_147679262_147679342_147679449
89020	chr2	-	1439	2	FSM	ENSMUSG00000073236.5	ENSMUST00000139636.2	427	2	138	-1150	-125	-328	multi-exon	FALSE	canonical	2	3	junction_1	0	13	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACTTGCTAAAAAATTGCA	9150	False	NA	NA	False	NA	NA	NA	153187855	153183404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_153184785_153187796
89021	chr12	-	3558	12	NNC	ENSMUSG00000021189.12	novel	5363	11	NA	NA	-16	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.882417954545	35	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATTAACCTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	101924423	101885170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_101886111_101887938_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924276
89022	chr16	+	7104	25	NNC	ENSMUSG00000022721.20	novel	2367	12	NA	NA	5	34450	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	135.488718011255	661	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGCCGCGCGGGCGAGCG	274	False	NA	NA	False	NA	NA	NA	18066751	18107086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963_18073469_18074534_18074649_18076056_18076178_18077404_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096007_18096184_18096381_18098083_18098369_18098478_18098619_18100985_18101147_18101559_18102559_18106964
89023	chr7	+	2100	1	NIC	ENSMUSG00000001918.18	novel	2764	9	NA	NA	2312	-2924	mono-exon	FALSE	NA	NA	NA	NA	NA	6	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTAATAACAACAACAACTC	NA	False	NA	NA	False	NA	NA	NA	16522607	16524707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_16522600_16524700
89024	chr4	-	4722	17	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	-2	73347	intron_retention	FALSE	non_canonical	0	0	junction_1	59.1277417440409	447	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTCTGAAACGCCTGGG	1937	False	NA	NA	False	NA	NA	NA	116664839	116578159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116578452_116598810_116599114_116608299_116608419_116628991_116629044_116657727_116657811_116658354_116658439_116658642_116658728_116658914_116659004_116659420_116659537_116659791_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
89025	chr11	+	3835	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	7	-218	combination_of_known_splicesites	FALSE	canonical	3	11	junction_8	565.507071807143	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332189	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
89026	chr11	+	834	4	FSM	ENSMUSG00000071866.13	ENSMUST00000137829.8	677	4	-8	-149	0	0	multi-exon	FALSE	canonical	3	36680	junction_3	786.740674484858	226	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTGTCCTTGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	6365867	6369812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6365980_6368100_6368315_6369112_6369286_6369477
89027	chr17	+	1669	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	1343	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1071.28140094001	11	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13136704	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13136771_13136929_13137056_13138232_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
89028	chr1	-	4250	8	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	622	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	449.11577526495	9	87	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGAATTCAACTCTTCAC	NA	False	NA	NA	False	NA	NA	NA	167111548	167050470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_167051665_167051723_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167111406
89029	chr2	-	4845	15	Antisense	novelGene_ENSMUSG00000058793.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	481	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCTTGGACTTCATCTT	NA	False	NA	NA	False	NA	NA	NA	132153970	132122489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_132122561_132135162_132135300_132136299_132136401_132137450_132137546_132139141_132139282_132139550_132139612_132140387_132140471_132142472_132142560_132143149_132143220_132143998_132144152_132146277_132146397_132146770_132146875_132147070_132147709_132147842_132149503_132152644
89030	chr8	-	2548	10	NIC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	-17	1033	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	153.13787864713	1400	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCTTTAAAAAAAAAAAA	577	False	NA	NA	False	NA	NA	NA	71725139	71702735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71724927
89031	chr9	-	1257	1	Genic_Genomic	ENSMUSG00000007892.9	novel	NA	NA	NA	NA	3	1	mono-exon	FALSE	NA	NA	NA	NA	NA	35	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGACTGGTCTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	61821821	61820564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_61820600_61821800
89032	chr4	+	3893	6	Fusion	ENSMUSG00000094417.2_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-44	1174	multi-exon	FALSE	canonical	2	3	junction_4	108.737482038164	386	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATGCAATTATGTCCATC	NA	False	NA	NA	False	NA	NA	NA	145501244	145557686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145501361_145510590_145510684_145541336_145541406_145551778_145551837_145552678_145552806_145554256
89033	chr2	-	7734	9	Intergenic	novelGene_2723	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	151	73	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTACCCTAAAATATCCCA	NA	False	NA	NA	False	NA	NA	NA	150288835	150032319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_150032434_150032635_150032701_150034616_150034982_150080360_150080486_150080820_150081356_150110528_150110834_150167570_150167844_150282829_150284271_150284324
89034	chrM	+	888	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	72	-3	72	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	70	False	NA	-80	True	NA	NA	NA	2822	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
89036	chr17	-	2059	9	FSM	ENSMUSG00000036775.14	ENSMUST00000237265.2	1993	9	-88	22	-8	-22	multi-exon	FALSE	canonical	1	4	junction_1	55.4211151096764	9	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGTTTCTAGACAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	26309282	26300225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26301236_26301944_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
89037	chr15	-	3563	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	11	-1289	11	490	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	50	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCTAATTGTCCCAAAT	NA	False	NA	NA	False	NA	NA	NA	36794764	36770523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
89038	chr3	-	2149	1	Intergenic	novelGene_3086	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4779	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAAGCAGAAGCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	19219631	19217482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_19217500_19219600
89039	chr5	+	1197	3	Antisense	novelGene_ENSMUSG00000096810.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16606	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCCACCCTTCAAGTGG	NA	False	NA	NA	False	NA	NA	NA	12895678	13093058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_12895864_13081543_13081703_13092205
89040	chr11	-	3690	14	FSM	ENSMUSG00000020530.15	ENSMUST00000168434.8	3056	14	24	-658	-4	658	multi-exon	FALSE	canonical	3	67	junction_13	138.817874810357	403	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGACTGCATGTGACA	NA	False	NA	NA	False	NA	NA	NA	84761619	84722528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761430
89041	chr19	+	1279	5	NNC	ENSMUSG00000056201.9	novel	1148	6	NA	NA	-694	0	intron_retention	FALSE	non_canonical	0	0	junction_1	2714.10412244998	329	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	5539788	5544057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5539960_5540556_5540631_5542524_5542833_5543182_5543260_5543408
89042	chr11	+	4481	2	NNC	ENSMUSG00000018379.18	novel	759	2	NA	NA	-1	2	intron_retention	FALSE	canonical	0	0	junction_1	0	992	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGATTTAAGTTCTCCAT	6679	False	NA	NA	False	NA	NA	NA	87938627	87944583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87938767_87940241
89043	chr8	-	4941	5	Antisense	novelGene_ENSMUSG00000110458.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	27	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAATGCGGTGCCACAGG	NA	False	NA	NA	False	NA	NA	NA	20727333	20697866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20698084_20711885_20712049_20717239_20717495_20721118_20721239_20723147
89044	chr3	+	2001	8	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-25	1343	intron_retention	FALSE	non_canonical	0	0	junction_7	2287.57378826011	792	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGGGCTGGGGCGATC	NA	False	NA	NA	False	NA	NA	NA	88483157	88497069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495706_88496882
89045	chrX	-	3317	10	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	355.625270943072	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256254	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243474_93247600_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
89046	chr1	-	1626	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-841	-2	-841	2	mono-exon	FALSE	NA	NA	NA	NA	NA	60	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
89047	chr14	+	1769	12	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	625.919013587419	25	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAATCCTCAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	30271105	30295574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280771_30287540_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
89048	chr3	-	3398	18	NNC	ENSMUSG00000001018.16	novel	1928	4	NA	NA	-3	11797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	255.905421542973	494	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGAACAATGGAGGCCACA	NA	False	NA	NA	False	NA	NA	NA	90398303	90383535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_90383551_90384309_90384371_90384625_90384669_90387909_90388013_90388296_90388376_90388668_90388774_90390083_90390148_90391758_90391878_90392996_90393076_90393491_90393580_90394157_90394217_90394286_90394402_90394530_90394623_90394761_90395137_90395230_90396901_90397460_90397580_90397854_90397902_90398138
89049	chrM	+	651	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	494	-1	494	1	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTGATAGTATAAACATTA	-11	True	NA	22	True	NA	NA	NA	14638	15289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14600_15300
89050	chr1	+	1207	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-3	12	-3	-12	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454444	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
89051	chr11	-	3040	3	FSM	ENSMUSG00000035455.13	ENSMUST00000109664.2	2807	3	-57	-176	-27	-88	multi-exon	FALSE	canonical	3	23	junction_1	194	1567	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	NA	False	NA	NA	NA	11758989	11750375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_11753064_11755958_11756216_11758894
89052	chr13	+	15255	19	Fusion	ENSMUSG00000114426.2_ENSMUSG00000113156.2_ENSMUSG00000113350.3	novel	604	3	NA	NA	-15964	5879	intron_retention	TRUE	non_canonical	0	0	junction_4	23.7476444575867	733	227	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTCGTTTCACCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	66309196	66729854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66309325_66309508_66309570_66325249_66325393_66325840_66326525_66334416_66334495_66340135_66340278_66341741_66341914_66343044_66343121_66344211_66347539_66635968_66636190_66674049_66674177_66674374_66674436_66676027_66676205_66676288_66678801_66701050_66701079_66721017_66721110_66721308_66721370_66722425_66727887_66728150
89054	chr3	-	1034	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	-71	-78	71	mono-exon	FALSE	NA	NA	NA	NA	NA	69	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	149779257	149778223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778200_149779300
89055	chr11	-	1785	8	FSM	ENSMUSG00000042709.16	ENSMUST00000108721.9	1813	8	14	14	-1	-2	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	1785	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAAAGTGAATCTT	NA	False	NA	NA	False	NA	NA	NA	60307863	60291465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
89056	chr4	+	4072	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33229	-857	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_4	278.693810480247	5	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAATTATGTCCATCCACT	NA	False	NA	NA	False	NA	NA	NA	146500250	146553892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500544_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
89057	chr1	+	3852	9	Antisense	novelGene_ENSMUSG00000026000.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	564	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGATGCGGCGCGTTTAC	NA	False	NA	NA	False	NA	NA	NA	67040275	67078022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_67042716_67043496_67043571_67043948_67044124_67046024_67046210_67048386_67048534_67049069_67049205_67060015_67060224_67073281_67073401_67077653
89058	chr5	-	1283	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	24	1531	0	-5	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	374	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTAGTATTGTTGTCCTTT	6788	False	NA	NA	False	NA	NA	NA	148989826	148985042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
89059	chr2	-	728	3	FSM	ENSMUSG00000051730.16	ENSMUST00000135459.2	316	3	-410	-2	-410	2	multi-exon	FALSE	canonical	3	445	junction_1	17.5	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTACTTGTCTCTAGC	8702	False	NA	NA	False	NA	NA	NA	69704804	69701559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_69701661_69702075_69702126_69704227
89060	chr17	+	1804	2	FSM	ENSMUSG00000023067.15	ENSMUST00000122348.3	1172	2	495	-1127	495	-18	multi-exon	FALSE	canonical	3	1159	junction_1	0	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTTCTCGATGATTTA	9273	False	NA	NA	False	NA	NA	NA	29317368	29319678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29317812_29318317
89061	chr7	+	1353	12	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	-6	-407	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_10	1422.33254471962	383	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	137039336	137069916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137068413_137068483_137069661
89062	chr3	-	969	5	Antisense	novelGene_ENSMUSG00000037894.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	394	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGTCTCCCGCCTTCCTCG	NA	False	NA	NA	False	NA	NA	NA	137572683	137570349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_137570457_137570892_137570970_137571278_137571399_137571775_137571913_137572155
89063	chr11	-	1823	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	36	8	36	-3	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	230	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGATTGTGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	120472414	120468937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
89064	chr11	-	2989	13	FSM	ENSMUSG00000020530.15	ENSMUST00000154915.9	2528	13	-16	-445	-16	0	multi-exon	FALSE	canonical	3	231	junction_7	87.5523256242929	417	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGCCTCTTCCTTCCTCA	NA	False	NA	NA	False	NA	NA	NA	84761044	84723186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732246_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702
89065	chr1	-	4645	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	34	-122	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	103.726503363412	32	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTCTGTTCATATTTA	NA	False	NA	NA	False	NA	NA	NA	133589084	133547730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133588974
89066	chrM	+	1521	2	Genic_Genomic	ENSMUSG00000064351.1_ENSMUSG00000064353.1	novel	1545	1	NA	NA	5	-68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	6	True	NA	NA	False	NA	NA	NA	5332	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_5812_5901
89067	chr5	-	4441	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	-176	-1549	28	-4	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	1528	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGCATTTATCTATGTC	NA	False	NA	NA	False	NA	NA	NA	92231548	92200026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
89068	chr4	+	1094	3	Genic_Genomic	ENSMUSG00000081838.2_ENSMUSG00000083826.2	novel	794	1	NA	NA	-23	47	multi-exon	FALSE	non_canonical	0	0	junction_1	0	125	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	142879118	142894013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_142879281_142879456_142879531_142893155
89069	chr16	-	2123	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1204	-3	695	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
89070	chr7	-	5121	18	NNC	ENSMUSG00000030493.14	novel	831	5	NA	NA	27	57900	intron_retention	TRUE	non_canonical	0	0	junction_1	56.7124111447809	594	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCAGCCGCCCTGCCGC	NA	False	NA	NA	False	NA	NA	NA	35096234	35033676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_35033835_35053154_35053273_35060404_35060534_35063041_35063116_35070131_35070209_35070536_35070662_35071725_35071895_35075582_35075771_35076396_35076556_35078989_35079106_35080755_35080957_35083393_35083470_35084061_35084209_35084750_35084906_35090177_35092517_35094399_35094553_35094661_35094802_35095637
89071	chr1	-	2932	13	FSM	ENSMUSG00000026024.15	ENSMUST00000159166.8	2977	13	45	0	40	0	multi-exon	FALSE	canonical	2	94	junction_2	9.94847838728226	11	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTGGGCCCCATTAAGC	NA	False	NA	NA	False	NA	NA	NA	59276345	59230767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
89072	chr1	-	6006	32	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	-5145	1	intron_retention	FALSE	canonical	0	0	junction_11	518.141411559169	228	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGACGTCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71668648	71624680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640355_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474
89073	chr11	-	4115	22	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-148	978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.303948187081	22	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97078855	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053471_97054250_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
89074	chr17	-	2547	11	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	29	-234	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	286.31807487478	118	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050154	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008922_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
89075	chrX	-	1808	6	ISM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	90	3	32	-3	intron_retention	FALSE	canonical	3	14744	junction_4	846.047185445351	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTTTGGTTTGCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	101232910	101228549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899
89076	chr11	+	6106	18	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	31354	0	-1195	0	3prime_fragment	FALSE	canonical	3	480	junction_17	72.0301743768627	447	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGTCTCCCATCT	NA	False	NA	NA	False	NA	NA	NA	57931243	57952860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57931279_57931515_57931582_57932303_57932479_57933055_57933185_57933261_57933469_57933569_57933733_57934731_57934877_57938520_57938696_57938802_57938973_57940522_57940916_57941608_57941733_57941827_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57947990_57948086_57948215_57949384
89077	chr9	+	2985	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	89.442680413686	36	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	NA	False	NA	NA	NA	99125509	99182457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99125938_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
89078	chr7	+	3205	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	-202	5	-147	-2	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	1671	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATACTACACTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	79944050	79965997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
89079	chr12	+	6080	22	NIC	ENSMUSG00000021111.16	novel	4380	22	NA	NA	0	0	intron_retention	FALSE	canonical	3	65	junction_21	449.844346977859	665	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATAGTTGGCTGGTTTC	NA	False	NA	NA	False	NA	NA	NA	105750991	105805203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105801421
89080	chrM	-	628	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGCCGAAGATAATTAGTTT	5418	False	NA	NA	False	NA	NA	NA	984	356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_400_1000
89081	chr9	+	6544	17	ISM	ENSMUSG00000032479.16	ENSMUST00000165876.8	5573	19	12	774	12	0	intron_retention	FALSE	canonical	3	256	junction_1	34.056421475986	60	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTATTGAAATGGCCTG	NA	False	NA	NA	False	NA	NA	NA	109760943	109912241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848
89082	chr18	+	1078	2	Intergenic	novelGene_4498	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	67	junction_1	0	255	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	9592761	9597953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_9592989_9597102
89083	chr15	-	1942	12	NNC	ENSMUSG00000050891.11	novel	915	12	NA	NA	0	-50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	33.3979263967586	829	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGGTTTGGATTTTC	NA	False	NA	NA	False	NA	NA	NA	58805576	58771829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793301_58795753_58795818_58798284_58798335_58800532_58800599_58805527
89084	chrX	-	2205	5	NNC	ENSMUSG00000015290.16	novel	2442	4	NA	NA	-19	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	734.211992547112	13	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATGCTGTCTCTTAT	NA	False	NA	NA	False	NA	NA	NA	73412138	73409349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_73410426_73410495_73411193_73411306_73411516_73411758_73411865_73412021
89085	chr4	-	5159	2	Intergenic	novelGene_1820	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGATTATACTGGGGTT	NA	False	NA	NA	False	NA	NA	NA	35185572	35159213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_35159221_35180420
89086	chr7	-	1472	2	NIC	ENSMUSG00000050708.17	novel	968	4	NA	NA	1	0	intron_retention	FALSE	canonical	3	69387	junction_1	0	49	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109262	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45108085_45108507
89087	chr13	+	4363	12	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	0	-14	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	187.610022816365	615	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAACAAAAAAATTATAAAAC	NA	False	NA	NA	False	NA	NA	NA	54769616	54811862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_54769717_54777202_54777278_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
89088	chr2	+	748	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	-26	7	-6	-7	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTGAATGGGCTTGGCT	5796	False	NA	NA	False	NA	NA	NA	32851725	32854048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
89089	chr17	+	1128	4	Antisense	novelGene_ENSMUSG00000024121.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCAGGCGCTGCGCTC	NA	False	NA	NA	False	NA	NA	NA	24375699	24388371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24375707_24382838_24383582_24383671_24383859_24388180
89090	chr17	-	2468	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	22	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	87	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGAGGCTGTGTGCTCA	NA	False	NA	NA	False	NA	NA	NA	36149176	36144811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146658_36146817_36146932_36147054_36147166_36147519_36147629_36148888
89091	chrM	+	2438	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-56	-800	-56	800	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGGACCCCTATACTATA	344	False	NA	-34	True	NA	NA	NA	1037	3475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_3500
89092	chr3	+	1441	8	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	886.102219192088	5	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGATGTCCTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	79498740	79510957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79507576_79507707_79509578_79509666_79509749_79509793_79510337
89093	chr4	-	1364	4	NIC	ENSMUSG00000047675.16	novel	860	6	NA	NA	0	-2	intron_retention	FALSE	canonical	3	8358	junction_3	2439.93210288046	88	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTGTCTAGGTGTTTGG	NA	False	NA	NA	False	NA	NA	NA	117013281	117011032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117011185_117011495_117012011_117012204_117012875_117013254
89094	chr14	+	2639	8	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14940	215	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3.95381500088516	42	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTTTATTTGATATTTT	NA	False	NA	NA	False	NA	NA	NA	16042350	16064161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_16042755_16044129_16044244_16047431_16047583_16057290_16057426_16058159_16058323_16059272_16059405_16060080_16060263_16062803
89095	chrM	-	960	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	107	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGGGAGAGGATTTGAA	9986	False	NA	-1	True	NA	NA	NA	3710	2750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2800_3700
89096	chrX	-	3620	26	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.979795897113271	11	27	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGGCGGCGGCAGAGCC	NA	False	NA	NA	False	NA	NA	NA	20548945	20529174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20529364_20534686_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544511_20544780_20545022_20545627_20545705_20545831_20546027_20547026_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
89097	chr11	+	2527	6	NNC	ENSMUSG00000020888.17	novel	2968	15	NA	NA	208	873	intron_retention	FALSE	canonical	0	0	junction_1	220.232604307355	8	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCTTCGTACACCTATG	1460	False	NA	NA	False	NA	NA	NA	69896491	69899768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_69896620_69896763_69896855_69896961_69898347_69898640_69898770_69898845_69898978_69899106
89098	chr10	-	2509	12	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-56	130	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	60.5360353033458	376	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCAGCCTGGTCTACCG	70	False	NA	NA	False	NA	NA	NA	41685923	41594705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
89099	chr7	-	5412	10	NNC	ENSMUSG00000030970.17	novel	1997	10	NA	NA	118	3058	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_9	329.604514232541	892	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCCGTGGATAATTTGT	NA	False	NA	NA	False	NA	NA	NA	132724777	132586233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132683485_132683590_132724415
89100	chr1	-	5958	10	Antisense	novelGene_ENSMUSG00000101973.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	91	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTTAATTAGGTATTTT	NA	False	NA	NA	False	NA	NA	NA	147867519	147232911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_147233575_147314391_147315281_147315657_147316065_147389298_147389492_147502470_147502750_147502915_147503471_147550434_147552041_147688068_147688525_147799992_147800219_147866835
89102	chrX	-	664	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	408	-73	-408	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGGGCTGCCCAGAACAT	NA	False	NA	NA	False	NA	NA	NA	79238531	79237867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237900_79238500
89103	chr4	-	504	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	66	3136	66	0	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	306	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	-1	True	NA	NA	False	NA	NA	NA	3835599	3834469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
89104	chr17	-	4555	16	NNC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	-2	10977	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.051816552364	580	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTCCAGAAAGGCTGACT	NA	False	NA	NA	False	NA	NA	NA	25459100	25441327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25441347_25441551_25441695_25447554_25447637_25449176_25449381_25449491_25449748_25450683_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
89105	chr17	+	983	1	Intergenic	novelGene_169	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTGACCGCCTCCCGT	NA	False	NA	NA	False	NA	NA	NA	40153887	40154870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40154900
89106	chr17	+	2056	1	Intergenic	novelGene_189	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGCTGTGGTTTGGAGGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
89107	chr10	+	1146	1	FSM	ENSMUSG00000069622.6	ENSMUST00000092511.6	630	1	-140	-376	-140	376	mono-exon	FALSE	NA	NA	NA	NA	NA	83	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAGACTTTATTGA	1362	False	NA	NA	False	NA	NA	NA	59231436	59232582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_59231400_59232600
89108	chr2	-	3309	1	Genic_Genomic	ENSMUSG00000086563.2	novel	NA	NA	NA	NA	1872	2840	mono-exon	FALSE	NA	NA	NA	NA	NA	24	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGGTTATTTGGCATTCTG	NA	False	NA	NA	False	NA	NA	NA	150546924	150543615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_150543600_150546900
89109	chr11	+	4244	2	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	11	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGAGGCTACAGACAACCC	9487	False	NA	NA	False	NA	NA	NA	120467607	120471981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120470884_120471013
89110	chrY	-	8006	2	Intergenic	novelGene_4708	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6399	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATAGAGCAAATTCCAGT	NA	False	NA	NA	False	NA	NA	NA	58766150	58553019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_-_58560047_58765171
89111	chr9	-	655	1	Antisense	novelGene_ENSMUSG00000062933.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTCGTCATCGGCCGTGA	9521	False	NA	NA	False	NA	NA	NA	96778413	96777758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_96777800_96778400
89112	chrM	+	2673	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-56	-1035	-56	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	344	False	NA	-34	True	NA	NA	NA	1037	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_3700
89113	chr9	+	1593	8	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTCCAAGGCGACTGCCG	NA	False	NA	NA	False	NA	NA	NA	78385882	78388953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386137_78386233_78386471_78386555_78386816_78386904_78387057_78387133_78387433_78387524_78387710_78387797_78387968_78388917
89114	chr8	-	366	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	58	25	43	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108166153	108165787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
89115	chr10	+	2135	9	FSM	ENSMUSG00000053219.16	ENSMUST00000181645.8	1579	9	-12	-544	-12	544	multi-exon	FALSE	canonical	3	14	junction_1	39.8708853676464	497	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAAACCATAGACCATTT	NA	False	NA	NA	False	NA	NA	NA	22034455	22060360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_22034618_22047902_22048001_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
89116	chr1	+	3610	16	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	10	-5581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	472.572421257666	1	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAATGCTAACAACATAGA	NA	False	NA	NA	False	NA	NA	NA	118555685	118607317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117_118606571_118606638
89117	chr11	-	3644	19	NNC	ENSMUSG00000018425.19	novel	3813	18	NA	NA	114	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	41.5692193816531	508	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACTCTATAGACAGTAT	8641	False	NA	NA	False	NA	NA	NA	86698458	86659681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86660029_86660073_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
89119	chr17	+	2761	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	-322	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	106.167320772449	1263	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17341354	17367100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366138_17366389
89120	chr17	+	1928	4	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	375	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCCCACCTTCACCCTGA	NA	False	NA	NA	False	NA	NA	NA	47086027	47091168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_47086662_47088971_47089197_47089334_47089446_47090210
89121	chr2	-	2153	1	Antisense	novelGene_ENSMUSG00000085498.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2051	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACCTCAGAGGCACCGCT	NA	False	NA	NA	False	NA	NA	NA	129141470	129139317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_129139300_129141500
89122	chr15	+	3606	15	Fusion	ENSMUSG00000023048.14_ENSMUSG00000056851.15	novel	3222	14	NA	NA	12	-367	intron_retention	FALSE	non_canonical	0	0	junction_9	204.178043553629	8	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCCCAAGTGCAAAATGT	2417	False	NA	NA	False	NA	NA	NA	102367648	102408127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_+_102367691_102368542_102368582_102368804_102369155_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392598_102392676_102395522_102395565_102396639_102396713_102397210_102398243_102399068_102399239_102406923
89123	chr2	+	4236	5	NIC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	20	2600	intron_retention	FALSE	canonical	3	153	junction_2	35.4436171968946	1636	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGTATAAGGTATGGATT	NA	False	NA	NA	False	NA	NA	NA	177190027	177204156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246
89124	chr11	-	2437	11	NIC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	2877	junction_2	5362.8838370787	266	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACTGTTTCTATTTGCT	NA	False	NA	NA	False	NA	NA	NA	33113075	33102511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33102853_33103985_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
89125	chr17	-	2671	1	FSM	ENSMUSG00000093009.3	ENSMUST00000175268.3	66	1	-1455	-1150	-1455	1150	mono-exon	FALSE	NA	NA	NA	NA	NA	307	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTGCAACCTAGCACTT	6006	False	NA	NA	False	NA	NA	NA	35171448	35168777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35168800_35171400
89126	chr2	-	4273	17	ISM	ENSMUSG00000061136.17	ENSMUST00000210789.3	3773	26	34408	-1317	-11567	1317	3prime_fragment	FALSE	canonical	3	481	junction_9	69.9928567783885	2	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATATCAGTGTGTTGA	NA	False	NA	NA	False	NA	NA	NA	53046888	53026932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634
89127	chr3	-	1904	10	Antisense	novelGene_ENSMUSG00000118506.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8331	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89973364	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966108_89968944_89969424_89970513_89970555_89971729_89971861_89972813
89128	chr10	-	2289	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	11	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	781.223780386467	1	116	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCCACGGCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	127358302	127352999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354984_127355130_127355259_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
89129	chr5	+	7931	28	Fusion	ENSMUSG00000042719.18_ENSMUSG00000029452.19	novel	5447	24	NA	NA	-12	8096	multi-exon	TRUE	non_canonical	0	0	junction_24	145.29518697474	4511	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGCCGCCTCCGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	121536044	121590537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890_121578915_121579103_121581171_121582037_121583638_121585205_121585341_121590251
89130	chr1	-	712	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-27	-31	27	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
89131	chr11	+	5394	24	NNC	ENSMUSG00000035152.15	novel	2742	21	NA	NA	-3949	48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.58330627895	311	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAAGACGTTGTACTGTT	507	False	NA	NA	False	NA	NA	NA	83185900	83293518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_83187269_83188315_83188866_83189139_83189380_83189537_83189889_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
89132	chr13	-	2115	10	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-18	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1167.55775493597	4	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCCCTTTTGACTGTTT	NA	False	NA	NA	False	NA	NA	NA	100922928	100915236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100915739_100915883_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
89134	chr4	-	4546	19	ISM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	57390	2	-3917	-2	3prime_fragment	FALSE	canonical	3	748	junction_17	72.5555768249075	4	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTCTTGGTCTCCGTGTT	NA	False	NA	NA	False	NA	NA	NA	41217745	41194317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565
89135	chr12	+	6024	1	Intergenic	novelGene_4443	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTAGCAAGATTTTATC	NA	False	NA	NA	False	NA	NA	NA	95307322	95313346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_95307300_95313300
89136	chr9	+	3847	10	FSM	ENSMUSG00000011958.18	ENSMUST00000085393.13	2328	10	-57	-1462	-19	1400	multi-exon	FALSE	canonical	3	219	junction_9	27.3933397330153	400	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAGTTTTTCTTAGAAAA	NA	False	NA	NA	False	NA	NA	NA	69896728	69916999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
89137	chr1	-	4057	7	NNC	ENSMUSG00000117310.3	novel	4145	6	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	880.534954192936	804	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGACTTGCTTTAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	30988838	30979403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985721_30988629_30988701_30988754
89138	chr5	+	939	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	278	-12	-2	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	3	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
89139	chr2	-	16895	34	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	855	92	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGACTTACAAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	52019101	51961606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51961657_51963145_51963264_51964256_51966186_51966988_51967120_51967203_51967298_51968340_51968533_51971237_51971329_51972674_51972814_51975036_51975189_51978657_51978773_51979530_51979696_51980180_51980295_51982051_51982115_51982289_51982390_51983509_51983602_51984600_51984675_51985833_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993710_51994557_51994599_51995444_51995650_51996912_51997019_51997651_51997768_51998449_51998603_51999202_51999288_51999362_51999413_51999920_52003011_52006257_52006402_52006841_52006962_52009027_52009181_52010269_52010379_52011001
89140	chr13	-	1972	5	Fusion	ENSMUSG00000114172.2_ENSMUSG00000074865.12_ENSMUSG00000113495.2	novel	2021	2	NA	NA	-24301	85	multi-exon	FALSE	canonical	0	0	junction_1	42.3873507074929	17	48	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACTTTTGACTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	62815367	62484191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62485671_62487914_62488104_62667985_62668047_62790936_62791064_62815251
89141	chr6	-	2011	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	65	9	-65	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	8	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGGGTTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
89142	chr7	-	948	5	FSM	ENSMUSG00000033916.6	ENSMUST00000209487.2	888	5	-74	14	-5	-9	multi-exon	FALSE	canonical	3	2610	junction_4	222.956273739942	116	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGGACACTAATTTACC	6998	False	NA	NA	False	NA	NA	NA	12768671	12765954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766749_12767755_12767970_12768561
89143	chr4	+	4574	2	Intergenic	novelGene_1902	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGGTCCCGCGGAGTCCCG	NA	False	NA	NA	False	NA	NA	NA	91377335	91528702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_91379274_91526066
89144	chr17	+	3810	5	Intergenic	novelGene_22	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	56.9797113014799	311	21	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGTGAACATAGTTTT	NA	False	NA	NA	False	NA	NA	NA	17171738	17262648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17171798_17225365_17225539_17257537_17257665_17257906_17257968_17259258
89145	chr8	-	3560	4	ISM	ENSMUSG00000001910.6	ENSMUST00000238434.2	1117	5	822	-3102	822	441	3prime_fragment	FALSE	canonical	3	579	junction_3	38.1604798479031	288	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTAGGAGGTTAGTTTGA	5215	False	NA	NA	False	NA	NA	NA	85402802	85396666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713
89146	chr2	-	3972	18	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	54	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	451.162128769676	3	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTGGTTATGGTAC	NA	False	NA	NA	False	NA	NA	NA	103627395	103595357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608355_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
89149	chr15	-	4330	22	NNC	ENSMUSG00000022350.8	novel	4033	29	NA	NA	-6868	2147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.582894131439	8	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGCTCTTAGAACTT	NA	False	NA	NA	False	NA	NA	NA	59231246	59201698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_59203228_59203815_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111
89150	chr4	+	2381	6	Antisense	novelGene_ENSMUSG00000028706.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	293	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAGGATTGAGGGCTGCT	5668	False	NA	NA	False	NA	NA	NA	115890056	115911031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_115891508_115892947_115893072_115897263_115897429_115901881_115902044_115905533_115905861_115910879
89151	chrX	+	12537	9	Intergenic	novelGene_3961	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	116	68	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	75967453	76314451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_75967948_75968016_75968614_75982381_75982709_76104062_76106720_76174149_76174268_76222987_76224021_76247058_76247391_76302306_76305451_76310616
89152	chr17	+	2113	6	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	103	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCAGAAGAGGCCGGCG	1635	False	NA	NA	False	NA	NA	NA	36144812	36149120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36144960_36145262_36145332_36145486_36146930_36147052_36147163_36147516_36147629_36148888
89153	chr17	-	1352	2	Antisense	novelGene_ENSMUSG00000060586.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCACAACTAACAGGGCAGA	1880	False	NA	NA	False	NA	NA	NA	34534116	34528455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_34528833_34533141
89154	chr1	+	2193	4	NIC	ENSMUSG00000073702.12	novel	1049	5	NA	NA	-18	0	intron_retention	FALSE	canonical	3	7651	junction_1	2007.53845957348	103	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	39406991	39410447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_39407016_39407229_39409221_39410034_39410148_39410382
89155	chr13	+	11695	12	Intergenic	novelGene_1413	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	307	167	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGGTTACTCAAATATCC	NA	False	NA	NA	False	NA	NA	NA	65537324	65831670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65538109_65541820_65542508_65542761_65543406_65610105_65610477_65618852_65618865_65691208_65691309_65692720_65694741_65694823_65695047_65695131_65695583_65696091_65696128_65825250_65831358_65831410
89156	chr17	-	684	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	42	8	-13	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	115	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	NA	False	NA	NA	NA	74623416	74606476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
89157	chr6	+	1733	8	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	-8	415	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2262.72684509426	24	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTTTGGAACTTGTAAAC	5858	False	NA	NA	False	NA	NA	NA	67243980	67261710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244188_67248288_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
89158	chr1	+	7338	2	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	49769	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	19	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTAAACCCATGTGGCT	8170	False	NA	NA	False	NA	NA	NA	118605444	118612885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_118611656_118611758
89159	chr14	+	1612	9	NIC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-43	178	intron_retention	FALSE	canonical	3	2055	junction_4	145.16865191907	240	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATGGCTCACGTATGTGC	NA	False	NA	NA	False	NA	NA	NA	21881590	21895765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
89160	chr15	-	4925	4	Antisense	novelGene_ENSMUSG00000098021.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	31	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGTCTTCTCAAGCACGT	2125	False	NA	NA	False	NA	NA	NA	39110545	38936217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_38936282_39105229_39108870_39109015_39109754_39110062
89161	chr17	-	1034	4	NIC	ENSMUSG00000057388.10	novel	1219	4	NA	NA	-10	4	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	479.798800424604	4247	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTACTGTGTTGTGCTCT	NA	False	NA	NA	False	NA	NA	NA	13135000	13130231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_13130637_13132656_13132889_13134524_13134712_13134790
89162	chr9	+	5257	8	NIC	ENSMUSG00000031939.17	novel	1210	11	NA	NA	232	6	intron_retention	FALSE	canonical	0	0	junction_1	224.641755618467	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAATATATACAGTAAA	9419	False	NA	NA	False	NA	NA	NA	15217856	15228249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217934_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069
89163	chr9	+	3183	8	FSM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	24	-644	24	7	multi-exon	FALSE	canonical	3	114	junction_4	22.2545569743019	105	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTGCCCAGGGTATATGA	NA	False	NA	NA	False	NA	NA	NA	65343093	65360343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
89164	chr2	+	1549	3	Genic_Genomic	ENSMUSG00000064193.9	novel	1302	1	NA	NA	-27	331	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTCTAAATTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	80667457	80669117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_80667610_80667676_80667962_80668005
89165	chr19	+	2719	10	FSM	ENSMUSG00000024947.18	ENSMUST00000079327.12	2639	10	-80	0	-46	0	multi-exon	TRUE	canonical	3	89	junction_1	99.9901229690114	352	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	508	False	NA	NA	False	NA	NA	NA	6384962	6390919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6385113_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
89166	chr6	-	3176	5	ISM	ENSMUSG00000030189.16	ENSMUST00000032309.13	1853	10	10191	12	-6	-12	3prime_fragment	FALSE	canonical	3	2150	junction_4	421.086318348151	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAAAGGAAAGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	131355210	131341829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_131342369_131344727_131344827_131345351_131345524_131347285_131347378_131352936
89167	chr1	-	3650	6	NIC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	6	-1289	intron_retention	FALSE	canonical	3	2151	junction_4	166.606842596575	129	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTGAGAACCATTCCCA	NA	False	NA	NA	False	NA	NA	NA	13730764	13694842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
89168	chrM	-	726	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAACCCTAAGAGGTATAAC	5379	False	NA	NA	False	NA	NA	NA	1023	297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_300_1000
89169	chr14	-	2145	9	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	7	249	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	95.1609656056516	7	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATCAAGCAAAACCTTT	NA	False	NA	NA	False	NA	NA	NA	21102569	21085832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102522
89170	chr2	-	5247	25	NNC	ENSMUSG00000061136.17	novel	3773	26	NA	NA	-94	1374	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	154.370405914548	460	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTATAAAACATGTAAATCCA	NA	False	NA	NA	False	NA	NA	NA	53081390	53026875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53066374_53066429_53067364_53067446_53079980_53080113_53081160
89171	chr9	-	5129	13	NNC	ENSMUSG00000032423.13	novel	9450	12	NA	NA	7	-1060	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	259.211464509835	20	92	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCGATATGTGCTATATAA	NA	False	NA	NA	False	NA	NA	NA	88364242	88332843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88335468_88335636_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
89172	chr9	+	3411	17	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	4	0	intron_retention	FALSE	canonical	3	165	junction_10	73.8784633282934	55	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	NA	False	NA	NA	NA	99125498	99182457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99180636_99181780
89173	chr2	-	2797	12	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	-11	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	87.0684161502269	266	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATCTTCACCACCATTTT	NA	False	NA	NA	False	NA	NA	NA	153474671	153458867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_153460234_153460336_153460714_153461053_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474183_153474513
89174	chr6	+	2246	9	NNC	ENSMUSG00000013736.17	novel	2283	9	NA	NA	18	-7	intron_retention	FALSE	canonical	1	7	junction_1	302.286701659203	15	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCATTCTTTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	106746191	106759428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_106746253_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
89175	chr5	-	4334	15	NIC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	-6438	-1969	intron_retention	FALSE	canonical	3	600	junction_13	80.3231039017303	68	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGGGTGATTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	27977173	27947046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001
89176	chr1	+	677	4	FSM	ENSMUSG00000006412.11	ENSMUST00000006579.5	885	4	-29	237	-29	195	multi-exon	FALSE	canonical	3	27	junction_3	957.822994550083	5110	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGCTATAGCCTGAACC	NA	False	NA	NA	False	NA	NA	NA	171173268	171185733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185355
89177	chr4	+	4009	7	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43765	1179	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_5	146.064673651396	433	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATTATGTCCATCCGCTA	NA	False	NA	NA	False	NA	NA	NA	145508041	145557691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145508210_145510590_145510684_145516045_145516128_145541336_145541383_145551778_145551837_145552678_145552806_145554256
89178	chr17	-	2102	7	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	-11825	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	351.452422890433	2	37	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTGTTGAGCGTTTATT	NA	False	NA	NA	False	NA	NA	NA	7022045	7005443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007217_7010125_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009
89179	chr16	-	2755	10	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	799	6147	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1092	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGATCCGAAAACCCACT	NA	False	NA	-29	True	NA	NA	NA	22932695	22926545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22926568_22927334_22927600_22927867_22928008_22928732_22928904_22928983_22929092_22929327_22929472_22929873_22930011_22930249_22930342_22930565_22930645_22931098
89180	chr9	+	6402	27	NNC	ENSMUSG00000032512.8	novel	3845	19	NA	NA	8	10965	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	130.332506038124	618	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGGCCAGGCCACGCCCT	NA	False	NA	NA	False	NA	NA	NA	119723951	119766618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774_119757099_119757288_119757445_119757877_119758029_119758615_119758830_119759040_119759170_119759285_119759378_119761689_119761894_119762330_119762407_119766521
89181	chr11	-	1747	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	54	-1	54	-1	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	82	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGGCTTGTGTGTCAGTG	1901	False	NA	NA	False	NA	NA	NA	59119042	59102238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
89182	chr15	-	1158	8	ISM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	6675	8	40	-8	3prime_fragment	FALSE	canonical	3	1612	junction_5	100.894165604663	7	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTTCCTTCGTCCTGTG	9420	False	NA	NA	False	NA	NA	NA	77848338	77843205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219
89183	chr17	+	1245	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	115	2	115	-2	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3151	False	NA	NA	False	NA	NA	NA	35817029	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
89184	chr2	+	15988	36	NNC	ENSMUSG00000036202.17	novel	2789	14	NA	NA	-1306	7413	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	149.172832236809	908	137	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTAGAGTAATGAAAAT	NA	False	NA	NA	False	NA	NA	NA	51961537	52019808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51961660_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
89185	chr1	+	3470	11	NNC	ENSMUSG00000013973.13	novel	849	5	NA	NA	-8	3298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	109.023162676562	46	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGAGCAAGTGGGCGGTA	1649	False	NA	NA	False	NA	NA	NA	171157169	171173197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171157261_171165819_171166209_171166390_171166499_171167760_171167908_171168395_171170364_171171003_171171130_171171259_171171395_171171630_171171735_171171854_171172110_171172483_171172568_171173134
89187	chr14	+	1521	9	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	781.575012394844	46	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACTCTGCAGTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	21881627	21895944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888544_21888687_21890486_21890638_21893949_21894008_21895213
89188	chr15	+	2638	11	Antisense	novelGene_ENSMUSG00000022329.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGCCGAACGCAAGGGA	NA	False	NA	NA	False	NA	NA	NA	34875734	35155767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_34876967_34945151_34945327_34959010_34959222_34999975_35000103_35008306_35008448_35072576_35072743_35073201_35073368_35099579_35099695_35114674_35114802_35115708_35115792_35155672
89189	chrX	-	4907	2	Intergenic	novelGene_4027	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCCTGCGTGGTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	116231608	116226626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116229956_116230030
89190	chr11	+	2319	4	NNC	ENSMUSG00000018379.18	novel	5362	4	NA	NA	27	3	intron_retention	FALSE	non_canonical	0	0	junction_1	523.730422598836	38	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCATGGTTGTCCTTTTTCC	6629	False	NA	NA	False	NA	NA	NA	87938577	87942319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87938614_87939440_87939482_87939881_87940042_87940237
89191	chr17	+	1750	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	98	1	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	546	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
89192	chr8	-	7018	1	Antisense	novelGene_ENSMUSG00000071796.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	333	57	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTCTACATGAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	20161215	20154197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20154200_20161200
89193	chr7	-	1396	5	NNC	ENSMUSG00000025102.15	novel	504	4	NA	NA	0	2503	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	119.015492688977	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAATATAAATATCAAG	NA	False	NA	NA	False	NA	NA	NA	81439213	81429426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439072
89194	chr9	+	1526	6	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	-16	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	75.6243347078174	62	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGTCTCTAGCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	108174092	108179500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176641_108178549
89195	chr17	+	3546	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	-63	0	16	0	multi-exon	FALSE	canonical	3	348	junction_6	505.023262923353	4	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	436	False	NA	NA	False	NA	NA	NA	56610336	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
89196	chr9	-	4873	21	NNC	ENSMUSG00000050471.18	novel	1962	10	NA	NA	3	5852	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.6349125734935	2332	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCGCGAGATGACGTAGAC	6395	False	NA	NA	False	NA	NA	NA	35179070	35122408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124580_35124675_35124829_35125038_35125128_35125228_35125351_35125481_35125570_35125855_35126027_35126111_35126327_35126761_35126924_35127003_35127108_35127231_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
89197	chr14	-	2314	8	Antisense	novelGene_ENSMUSG00000030662.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTCGGACCCGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	121185402	121178246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_121178405_121179041_121179154_121179239_121179296_121180058_121180184_121181091_121181310_121181742_121181972_121183486_121183629_121184128
89198	chr1	-	2402	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	64	-1536	intron_retention	FALSE	non_canonical	0	0	junction_1	896.466164076109	4	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTTAAAAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13730706	13695089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695149_13696091_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
89199	chr2	-	3331	9	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	14	-10	intron_retention	FALSE	canonical	3	4129	junction_1	202.240535934318	75	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAGAAAATCAGTCTCAT	9518	False	NA	NA	False	NA	NA	NA	10085307	10060850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10060973_10061580_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
89200	chr17	+	2105	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	12	-99	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1039.19561231808	11	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGGGTTTCTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	13135347	13143855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138802_13139314_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
89201	chrM	+	1563	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-291	106	-291	-106	mono-exon	FALSE	NA	NA	NA	NA	NA	41	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTCCAACCCTCACACAC	-2	True	NA	NA	False	NA	NA	NA	9875	11438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11400
89202	chr19	+	1358	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	48	-59	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	786.61442270022	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTCCAATTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	47720168	47723968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_47720261_47721068_47721188_47721379_47721428_47721957_47722351_47723262
89203	chr15	-	6162	29	FSM	ENSMUSG00000022350.8	ENSMUST00000022976.6	4033	29	12	-2141	12	2141	multi-exon	FALSE	canonical	3	371	junction_18	44.6203943487363	562	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCCCTTCTGCTCTTA	NA	False	NA	NA	False	NA	NA	NA	59246004	59201704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
89204	chr17	+	1631	3	ISM	ENSMUSG00000052525.15	ENSMUST00000144142.2	933	6	12789	-1105	12789	246	3prime_fragment	FALSE	canonical	1	1	junction_2	1.5	581	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTTTTAAAAAATCTATA	NA	False	NA	NA	False	NA	NA	NA	71876041	71896774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_71876184_71885096_71885389_71895577
89205	chr3	-	2333	3	NIC	ENSMUSG00000036513.16	novel	892	4	NA	NA	15	250	intron_retention	FALSE	canonical	3	528	junction_2	3.5	16	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCATTCCCAAAGCAACTA	NA	False	NA	NA	False	NA	NA	NA	57559114	57553529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_57554298_57557462_57558921_57559007
89206	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	296	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
89207	chr11	-	1859	9	NIC	ENSMUSG00000042709.16	novel	1813	8	NA	NA	-1	-3	combination_of_known_splicesites	FALSE	canonical	3	12	junction_8	136.995209770269	8	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAATCTTTGGTCTAAGCA	NA	False	NA	NA	False	NA	NA	NA	60307863	60291454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60302492_60302556_60307576
89208	chr15	+	2290	1	Intergenic	novelGene_3220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCCAAGAATTCTCTTAC	NA	False	NA	NA	False	NA	NA	NA	22699818	22702108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22699800_22702100
89209	chr1	-	1917	1	Intergenic	novelGene_385	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCCAAACAACAACAACAAC	4831	False	NA	NA	False	NA	NA	NA	72250857	72248940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_72248900_72250900
89210	chr6	-	2188	12	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	833	-16	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_11	2603.77604691328	20	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATTCTAAAGGAAATTGT	NA	False	NA	NA	False	NA	NA	NA	51445919	51439755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51445287
89211	chr9	-	3688	11	NNC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	0	-83	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	197.640608175547	616	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATAACTGATAGTCC	NA	False	NA	NA	False	NA	NA	NA	75466939	75405071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75451951_75452056_75466781
89212	chr5	+	1375	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	-15	-2	-15	2	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAAGCCTGGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115697510	115701788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
89213	chr7	-	2694	11	Genic_Genomic	ENSMUSG00000108645.2	novel	436	1	NA	NA	-16220	16645	multi-exon	FALSE	non_canonical	0	0	junction_1	0	802	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGGCTCCCAGGCTGCTC	NA	False	NA	NA	False	NA	NA	NA	63868492	63835191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_63835369_63847021_63847102_63848907_63849106_63851633_63851846_63852751_63852879_63854169_63854342_63858023_63858197_63858614_63858741_63859704_63859776_63860583_63860686_63867236
89215	chr18	-	4252	6	NNC	ENSMUSG00000024487.6	novel	3328	6	NA	NA	-21	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	122.086199056241	16	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTCCATTGGTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	40352417	40336957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_40340452_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
89216	chr10	-	1536	6	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	191	-42	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.210441849724	9	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACATAATTTTGTTTA	NA	False	NA	NA	False	NA	NA	NA	5755409	5749201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749568_5749738_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
89217	chr14	+	1678	10	NIC	ENSMUSG00000021916.17	novel	1692	8	NA	NA	-1727	149	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	37.8300292242963	67	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCAGGCTGGCCTTGAAC	6858	False	NA	NA	False	NA	NA	NA	30726688	30734097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30726748_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
89218	chr2	+	3038	9	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	1282	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	1350.4448746154	39	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162911413	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162911532_162914543_162914835_162916301_162916796_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
89219	chr2	-	4265	8	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3589	250992	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	54.3867480857878	1525	84	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGGTATAAGGTCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	175895207	175632391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175633035_175764103_175764586_175881660_175882726_175883192_175884942_175886096_175886158_175886363_175886491_175891615_175891671_175895124
89220	chr3	-	2536	13	NNC	ENSMUSG00000005968.15	novel	2631	13	NA	NA	23	-68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	30.1785197707833	1	107	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAAATTCTTTTCCTGT	6464	False	NA	NA	False	NA	NA	NA	94566155	94520133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_94521499_94522030_94522132_94523078_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
89221	chr2	+	2977	2	ISM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	19	0	19	0	intron_retention	FALSE	canonical	3	692	junction_1	0	360	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	NA	False	NA	NA	NA	135490845	135493983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_135490892_135491052
89222	chr10	-	2395	13	NIC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	-16	-5	combination_of_known_junctions	FALSE	canonical	3	7	junction_11	82.109175289164	51	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCTAAAAGCCTGTGGAA	110	False	NA	NA	False	NA	NA	NA	41685883	41594846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41657479_41657547_41685568_41685660_41685783
89223	SIRV1	+	1728	8	NNC	SIRV1B	novel	702	3	NA	NA	-9251	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	46.5999036523485	2	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACATAGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	1331	11606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_+_1485_6337_6472_6558_6813_7551_7813_10280_10365_10442_10792_10897_11188_11403
89224	chr11	+	1786	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	47	267	3	-267	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	11	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
89225	chr1	+	1460	7	Genic_Genomic	ENSMUSG00000097680.2	novel	2782	3	NA	NA	5013	-9409	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGAGGTCCAAAGACT	NA	False	NA	NA	False	NA	NA	NA	135181311	135184772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_135182123_135182665_135182859_135183712_135183830_135183971_135184058_135184201_135184329_135184516_135184613_135184742
89226	chr17	-	2662	12	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	30	-244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	274.402431138786	28	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCAAGGCCTTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	7050153	7005683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
89227	chr7	+	2249	3	NNC	ENSMUSG00000050917.6	novel	3030	3	NA	NA	327	-617	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	361	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGCCCAGGCTGTACCT	8329	False	NA	NA	False	NA	NA	NA	144415449	144418363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_144415570_144415968_144416221_144416486
89228	chrX	-	2073	1	Intergenic	novelGene_3903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATGAGCTAGGAAATTAA	NA	False	NA	NA	False	NA	NA	NA	32946654	32944581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_32944600_32946700
89229	chr5	-	3131	5	Intergenic	novelGene_807	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4777	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACCAAAACCGGGACCGC	8541	False	NA	NA	False	NA	NA	NA	110277627	110258176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_110258407_110259760_110259932_110271624_110271746_110272217_110272304_110275104
89230	chr7	+	3109	9	NIC	ENSMUSG00000025485.14	novel	3406	10	NA	NA	14	-79	intron_retention	FALSE	canonical	3	213	junction_1	24.9446261747896	4	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGACAGGATGCCAAGTT	NA	False	NA	NA	False	NA	NA	NA	140437377	140443564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
89231	chr14	+	1014	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-179	-499	-179	499	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTACCTAGCTGTACTA	NA	False	NA	NA	False	NA	NA	NA	13669258	13670272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670300
89232	chr15	-	2818	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	235	-931	-83	-3	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCATGAGTCTCAGTGG	675	False	NA	NA	False	NA	NA	NA	36793846	36771016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
89233	chr11	-	4775	1	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	334	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGAAAACAGGTAGGTG	NA	False	NA	NA	False	NA	NA	NA	57952860	57948085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57948100_57952900
89234	chr11	+	1810	6	FSM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	31	-873	3	873	multi-exon	FALSE	canonical	2	7	junction_2	1.72046505340853	56	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGCCTGCCTCTGCCTCCC	NA	False	NA	NA	False	NA	NA	NA	69512880	69515569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
89235	chr4	+	2205	6	NNC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	0	6	at_least_one_novel_splicesite	FALSE	canonical	3	577	junction_4	9168.97135779145	16	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATTGGGTATCTTAGAG	NA	False	NA	NA	False	NA	NA	NA	116542795	116558025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550953_116551045_116556367
89236	chr7	+	1144	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	-20	19	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGAGGCTCAGTAG	NA	False	NA	NA	False	NA	NA	NA	51396374	51397645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_51396386_51396512
89237	chr5	-	2138	7	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGAGACGCAGCGGACGC	NA	False	NA	NA	False	NA	NA	NA	129101386	129097277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129097341_129097589_129097637_129097745_129097831_129097927_129098054_129099064_129099253_129099436_129099610_129099930
89238	chr1	+	2295	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111300.8	2563	6	279	-11	16	11	multi-exon	FALSE	canonical	3	76	junction_1	69.9674209900579	88	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACTGAAATCTGAGGTC	1471	False	NA	NA	False	NA	NA	NA	171156991	171169910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_171157095_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
89239	chrUn_MU069435v1	-	589	1	Intergenic	novelGene_4764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	589	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_600
89240	chr5	+	943	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	274	-12	1	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	24	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
89241	chr9	+	2871	10	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	20	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	109.542933688064	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATGGTTTCTAATAAAGGA	NA	False	NA	NA	False	NA	NA	NA	109760887	109912210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892138_109911444
89242	chr7	-	7076	18	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	44	20973	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	414.010305272674	1123	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATCTGCAGTAAGCTGGC	6327	False	NA	NA	False	NA	NA	NA	132714384	132568318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132568422_132572912_132573065_132574414_132574489_132575151_132575352_132583008_132583129_132584097_132584228_132584409_132584642_132585460_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132714302
89243	chr11	+	2663	14	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	0	159	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	63.202408013447	13	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTTTTAAAAAAATGGTAA	NA	False	NA	NA	False	NA	NA	NA	29476446	29495438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29476566_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
89244	chr4	+	4028	21	NIC	ENSMUSG00000028397.14	novel	4196	22	NA	NA	8	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	74.8175113192092	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGTCTTCTGTCTGTCAA	NA	False	NA	NA	False	NA	NA	NA	74170180	74324098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_74170324_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
89245	chr15	-	5120	30	NNC	ENSMUSG00000022350.8	novel	4033	29	NA	NA	12	1687	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	95.1580698835967	586	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCAGAGTTCTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	59246004	59202158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_59203228_59203815_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
89246	chr13	-	6028	5	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-9	24626	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	72.2582175257597	379	95	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTATGTTTACCTGCAT	NA	False	NA	NA	False	NA	NA	NA	66589188	66541546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66542229_66575240_66580291_66581478_66581540_66581739_66581867_66589080
89247	chr7	-	5381	17	NNC	ENSMUSG00000030986.14	novel	2955	12	NA	NA	49	11616	intron_retention	FALSE	non_canonical	0	0	junction_1	176.493227561286	487	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCGTCCTTCCGGACTC	NA	False	NA	NA	False	NA	NA	NA	133378483	133311054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_133311256_133315914_133315989_133316624_133316707_133318587_133318678_133319325_133319516_133320832_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
89248	chr17	+	2089	1	Intergenic	novelGene_198	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCGTGGCGGTGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	40153887	40155976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156000
89249	chr2	+	2936	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	119	120	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	56.0614337467523	380	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGCAACTCTGAGAGAAAA	5120	False	NA	NA	False	NA	NA	NA	127267237	127278132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127267461_127269172_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
89250	chrX	+	3201	18	FSM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	793	7	793	-7	multi-exon	FALSE	canonical	3	331	junction_3	37.9662935558211	448	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTAACTTTCAGAGCACT	NA	False	NA	NA	False	NA	NA	NA	149830958	149872510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_149830978_149849176_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
89251	chr3	-	4495	4	NNC	ENSMUSG00000040943.13	novel	9179	11	NA	NA	-25997	-1229	intron_retention	FALSE	canonical	3	63	junction_3	52.9213252542552	64	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCACACATGTGAGACGGC	NA	False	NA	NA	False	NA	NA	NA	133212440	133186045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_133187189_133188999_133189079_133191272_133194479_133212373
89252	chr6	-	2560	12	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-320	4	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_11	1173.13490448977	1548	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGGATTTGAATCTTAA	8165	False	NA	NA	False	NA	NA	NA	145022230	144944879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614_145021756_145022075
89253	chr17	+	1703	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	48	98	48	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	23	True	NA	NA	NA	40157291	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159000
89254	chr5	-	5972	16	NNC	ENSMUSG00000029467.16	novel	4486	20	NA	NA	12294	-10	intron_retention	FALSE	non_canonical	0	0	junction_13	318.698017983587	217	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACCCTCAGCAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	122627386	122591586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607488_122609253_122609317_122611272_122611354_122627300
89255	chr16	+	1916	3	Intergenic	novelGene_3868	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	16	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACCTATCCTGGCTCC	2475	False	NA	-16	True	NA	NA	NA	93811910	93815001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_93812200_93813324_93814317_93814366
89256	chr13	+	4597	3	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	47	631	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_2	6.5	18	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTGTGATAATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	97619255	97634146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663
89257	chr15	-	1184	6	Antisense	novelGene_ENSMUSG00000115902.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCTCCCGGGCCAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	79792100	79776643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79776768_79779608_79779763_79781897_79782172_79782310_79782425_79783218_79783272_79791635
89258	chr8	+	3439	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	-88	-747	-81	1	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	18	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTGGCTGAAGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	75836115	75855068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
89259	chr7	+	1588	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3679.44090140592	289	98	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498516_46499601_46499779_46500308_46500483_46501300_46501419_46503406_46503531_46504400
89260	chr4	-	6779	5	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	134	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCGTGGGCCCGAGAGCG	NA	False	NA	NA	False	NA	NA	NA	42231661	41877259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41878296_41879659_41880988_42207622_42207630_42226365_42228990_42229877
89261	chr11	-	1276	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	134	223	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	117462	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113072	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
89262	chr6	+	3139	3	NNC	ENSMUSG00000036371.7	novel	717	5	NA	NA	-8	2514	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3373.5	39	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGAACCAGAAACCAGAC	5858	False	NA	NA	False	NA	NA	NA	67243980	67263809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244168_67258776_67258806_67260886
89263	chr2	-	1498	5	NIC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	137	-135	intron_retention	FALSE	canonical	3	1968	junction_1	230.474510521229	1780	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAAGTCATAGAGCAGT	8362	False	NA	NA	False	NA	NA	NA	132095097	132091216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132091616_132091693_132091818_132093163_132093679_132093822_132093921_132094735
89264	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1584	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
89265	chr16	-	1247	8	NNC	ENSMUSG00000033809.16	novel	1239	8	NA	NA	1	15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	139.378650313688	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTTCTTAGAATAAACC	NA	False	NA	NA	False	NA	NA	NA	20429504	20424253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20424468_20424611_20424755_20425273_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429329
89266	chr8	+	655	2	ISM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	4601	12	-69	-12	3prime_fragment	FALSE	canonical	3	74	junction_1	0	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATAAATAAGCCTTTTC	NA	False	NA	NA	False	NA	NA	NA	85639950	85641138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85640158_85640690
89267	chr15	+	841	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	7	3	7	-3	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	430	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCGGCGTGTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	76788284	76790511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
89268	chr11	+	1162	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	986	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGACGCGGGCTCTCCGC	NA	False	NA	NA	False	NA	NA	NA	33104924	33113076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33105220_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33109999_33110334_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
89269	chr2	+	7970	6	NNC	ENSMUSG00000078894.10	novel	2314	6	NA	NA	-26	6544	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	26.7536913340944	231	67	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTATGTGTTTGAGTGT	3009	False	NA	NA	False	NA	NA	NA	175968335	175988665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443_175977505_175978659_175983975_175986397
89270	chr17	+	1975	7	NNC	ENSMUSG00000024160.17	novel	1953	7	NA	NA	40	-4	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	67.8052767530342	419	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAAGCTGCCTGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	25105772	25111117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25106231_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
89271	chr14	-	6280	15	FSM	ENSMUSG00000048922.19_ENSMUSG00000093726.2	ENSMUST00000163100.8	3841	15	52	-2491	52	-687	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	518	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTACTTAGAGCTAGAA	NA	False	NA	NA	False	NA	NA	NA	67953007	67911312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
89272	chr8	-	3105	4	ISM	ENSMUSG00000001910.6	ENSMUST00000238434.2	1117	5	823	-2648	823	-13	3prime_fragment	FALSE	canonical	3	579	junction_3	38.1604798479031	3	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTTTGTAACAGCCCTGC	5216	False	NA	NA	False	NA	NA	NA	85402801	85397120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713
89273	chr4	-	3527	3	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGATGAAATGGCAGAACT	NA	False	NA	NA	False	NA	NA	NA	145179479	145159006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159149_145176033_145178885_145178945
89274	chr4	+	2459	14	NNC	ENSMUSG00000063524.14	novel	1902	8	NA	NA	128	3634	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_12	5843.25881355004	50	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTCTCGAAAAACCAAAAT	NA	False	NA	NA	False	NA	NA	NA	150322284	150336970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150322596_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942_150333095_150333749_150333819_150336287
89275	chr7	+	5992	4	Fusion	ENSMUSG00000064194.11_ENSMUSG00000074887.5	novel	810	3	NA	NA	9	1850	intron_retention	FALSE	canonical	0	0	junction_1	113.45581616745	166	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTGTGAAACAAAATTACT	NA	False	NA	NA	False	NA	NA	NA	42827020	42878116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_42827128_42870282_42873126_42873324_42873386_42875135
89276	chr6	+	2011	8	Antisense	novelGene_ENSMUSG00000108053.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7058	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGCCCCGCCTCCCGCGC	5342	False	NA	NA	False	NA	NA	NA	83282737	83294579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_83283791_83285913_83286044_83286446_83286533_83287389_83287501_83288190_83288345_83288793_83288916_83290342_83290529_83294410
89277	chr2	+	2671	23	Antisense	novelGene_ENSMUSG00000061136.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	15	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCTGCACATACCAACAAGA	NA	False	NA	NA	False	NA	NA	NA	53029174	53081234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_53029279_53030465_53030609_53031632_53031695_53031781_53031875_53031953_53032042_53034795_53034892_53035244_53035383_53035631_53035748_53035834_53035940_53036105_53036221_53040649_53040784_53041690_53041838_53042453_53042570_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53047007_53049266_53049328_53049568_53049691_53050787_53050899_53066374_53066429_53067364_53067446_53081160
89278	chr15	-	4328	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	17	58	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	9795	False	NA	NA	False	NA	NA	NA	22705095	22699821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700670_22701521_22704574_22704667
89279	chr2	+	3453	5	Antisense	novelGene_ENSMUSG00000075040.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	270	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCCCTCTACCGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	91474022	91480117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_91476819_91477940_91478192_91478360_91478422_91479494_91479771_91480048
89280	chr7	-	1017	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	5	0	-5	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
89281	chr7	-	567	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	87	7	-1	7	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	97	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACAGGCTTGGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	44773776	44771809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
89282	chr11	-	1778	6	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	304	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACTTCCGCCTGCGCACG	NA	False	NA	NA	False	NA	NA	NA	75656396	75623741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642906_75646398_75646507_75647642_75647847_75650114_75650253_75655443
89283	chr8	-	2201	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	-1	0	-1	0	multi-exon	FALSE	canonical	3	60	junction_9	146.200581394193	454	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTTAACTTCCAG	NA	False	NA	NA	False	NA	NA	NA	91860626	91850126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
89285	chr4	-	1912	3	FSM	ENSMUSG00000085241.8_ENSMUSG00000028896.14	ENSMUST00000152943.8	437	3	53	-1528	0	1528	multi-exon	FALSE	canonical	3	959	junction_1	21	747	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTAATGACTGACAACTTC	NA	False	NA	NA	False	NA	NA	NA	132080944	132077715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_132079555_132079973_132080010_132080907
89286	chr19	-	5889	21	NNC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	4	-2	intron_retention	FALSE	non_canonical	0	0	junction_6	464.025524621222	13	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGTGTTTTGTCAAT	8758	False	NA	NA	False	NA	NA	NA	60779077	60749556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60750743_60751502_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758443_60759438_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770318_60770460_60770605_60770797_60778906
89287	chr4	+	6882	4	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-63	4278	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	26.8700576850888	295	130	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATCTGATTTAGGAATGG	NA	False	NA	NA	False	NA	NA	NA	147390067	147422469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147409278_147409335_147415724_147416849_147416932
89288	chr4	+	2491	6	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14281	777	multi-exon	FALSE	non_canonical	0	0	junction_3	35.7189025587293	801	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145159028	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145173065_145173196_145173287_145173342_145176036_145176245_145176328
89289	chr19	+	5765	8	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	155	-892	intron_retention	FALSE	non_canonical	0	0	junction_5	3850.8593369082	238	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTCAGCGATTGGACAAA	998	False	NA	NA	False	NA	NA	NA	8944559	8954951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8948819_8949110_8950001_8950267_8952552_8954367
89290	chr10	-	2209	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	-1	14	-1	-14	multi-exon	FALSE	canonical	3	447	junction_2	23.5	387	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTTGCACTCATTACTTT	NA	False	NA	NA	False	NA	NA	NA	95252720	95247365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_95248973_95250692_95251054_95252479
89291	chr4	-	4418	27	NNC	ENSMUSG00000028433.15	novel	4368	29	NA	NA	14	0	intron_retention	FALSE	canonical	0	0	junction_11	195.685039324381	12	97	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGGTCTCCGTGTTCT	2	True	NA	NA	False	NA	NA	NA	41275102	41194315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202494_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
89292	chr2	-	4053	11	FSM	ENSMUSG00000082163.3_ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	0	-1973	0	881	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	251	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAATCATGTAATAAAAT	8134	False	NA	NA	False	NA	NA	NA	156848995	156835211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
89293	chr13	+	12186	7	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113156.2	novel	1525	4	NA	NA	-25	41936	multi-exon	TRUE	non_canonical	0	0	junction_5	54.6951145492498	365	92	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	66261268	66367850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840_66327524_66327595_66333027_66363215
89294	chr2	+	4046	12	ISM	ENSMUSG00000061689.16	ENSMUST00000169464.9	4851	13	51133	612	-35784	572	3prime_fragment	FALSE	canonical	3	14	junction_2	159.232508413129	661	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTCACCCAAAGCCCAC	NA	False	NA	NA	False	NA	NA	NA	156506757	156605671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_156506904_156542525_156543595_156546329_156546575_156547775_156547891_156548997_156549049_156552940_156553182_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
89295	chr19	-	1945	2	Intergenic	novelGene_1302	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21262	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTCCAACCGCCATAGTA	NA	False	NA	NA	False	NA	NA	NA	61166439	61155432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_61157194_61166255
89296	chr1	-	2294	6	ISM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	-7	6760	-7	1064	5prime_fragment	FALSE	canonical	1	70	junction_3	74.7786065663168	28	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCTACACCCCAACCCCA	NA	False	NA	NA	False	NA	NA	NA	72323480	72305090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
89297	chrX	-	4396	28	FSM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	-175	6	-175	-3	multi-exon	FALSE	canonical	3	390	junction_27	54.2283947104	603	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGATACTCTGGTGTTCG	NA	False	NA	NA	False	NA	NA	NA	59224624	59101321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
89298	chr2	+	1127	8	NNC	ENSMUSG00000027374.13	novel	3228	11	NA	NA	69	127	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	520.04309083626	55	11	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCACATGGTATATAGC	4036	False	NA	NA	False	NA	NA	NA	127429210	127445902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436459_127442748_127442807_127443297_127443361_127444304_127444442_127445548
89299	chr8	-	5808	4	Intergenic	novelGene_1588	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	60	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGAAGGTGGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	20171766	20036066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_20036158_20039781_20039902_20041809_20045732_20170091
89301	chr6	+	3535	9	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	-8	2104	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2554.51049310333	178	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGTACTGAGTTTGCA	5858	False	NA	NA	False	NA	NA	NA	67243980	67263399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244192_67244350_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258790_67260911
89302	chr15	-	2332	6	NNC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-75	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1645.44588485918	10	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	683	False	NA	NA	False	NA	NA	NA	36793838	36771019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772573_36775508_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
89303	chr15	-	3666	11	FSM	ENSMUSG00000016664.17	ENSMUST00000171436.8	3693	11	23	4	-13	-4	multi-exon	FALSE	canonical	3	507	junction_5	57.2486681067778	309	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCAGTGTCACTTTGC	7130	False	NA	NA	False	NA	NA	NA	83348784	83259811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
89304	chr8	+	5641	16	NNC	ENSMUSG00000025316.17	novel	1521	12	NA	NA	-1759	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	94.6043456836007	629	93	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTGTCTGTCTTGATGG	NA	False	NA	NA	False	NA	NA	NA	122674729	122755997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_122674876_122676524_122676587_122676690_122676788_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732419_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
89305	chr14	+	1704	1	FSM	ENSMUSG00000115222.2	ENSMUST00000228007.2	2749	1	413	632	413	-632	mono-exon	FALSE	NA	NA	NA	NA	NA	27822	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATAGAAATATTGG	NA	False	NA	NA	False	NA	NA	NA	55881473	55883177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55881500_55883200
89306	chr5	-	731	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	181	3	-16	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	45	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGTAGCGTCCTTAT	2245	False	NA	NA	False	NA	NA	NA	129916130	129909999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
89307	chr2	+	4115	12	NIC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-2	-5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	45.6369069145497	2489	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	152068793	152123767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
89308	chrM	+	566	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	578	0	578	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	6	False	NA	22	True	NA	NA	NA	14722	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14700_15300
89309	chr6	-	4835	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	-488	-2	-488	2	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	588	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTTCTGTAGTATGTTT	NA	False	NA	NA	False	NA	NA	NA	49192379	49062154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
89310	chr2	+	5462	9	NNC	ENSMUSG00000037523.14	novel	2959	8	NA	NA	-1296	2054	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	77.8362664508004	26	106	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCATTGATTTGACAGGCA	5964	False	NA	NA	False	NA	NA	NA	131074686	131091999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_131074811_131075113_131075274_131075729_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
89311	chr3	+	1878	14	Antisense	novelGene_ENSMUSG00000105655.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	9	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGGGGGGGGCACACAT	NA	False	NA	NA	False	NA	NA	NA	104702151	104761685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702556_104702639_104702765_104703011_104703099_104703175_104703300_104704077_104704156_104704283_104704477_104704589_104704713_104706713_104706924_104707012_104707110_104707259_104707366_104707590_104707748_104708000_104708150_104708270_104708278_104761667
89312	chr5	+	5146	21	FSM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	68	0	68	0	multi-exon	FALSE	canonical	3	392	junction_9	204.916348786523	1419	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTTTCTGTTTGTTTT	834	False	NA	NA	False	NA	NA	NA	75735682	75817382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
89313	chr19	+	2984	17	NNC	ENSMUSG00000040385.8	novel	1473	7	NA	NA	13	6219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1812.18311777363	38	10	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGGCCTGGCCTCCGC	3398	False	NA	NA	False	NA	NA	NA	4242184	4251638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4245211_4246082_4246179_4246384_4247113_4247254_4247340_4247402_4247474_4247590_4247671_4247782_4250271_4250370_4250462_4250578_4250926_4251057_4251327_4251399_4251481
89314	chr4	-	3044	5	Intergenic	novelGene_1810	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	42	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAACTCGTATTAAGGAC	NA	False	NA	NA	False	NA	NA	NA	24442772	24183222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_24183408_24183882_24184701_24184862_24186027_24316839_24316851_24441906
89315	chrX	-	8672	8	Antisense	novelGene_ENSMUSG00000073245.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	174	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTAGCTGAGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	34825020	34409454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_34411351_34589273_34589292_34741097_34746071_34758619_34758769_34820884_34821666_34821760_34821972_34822125_34822417_34824667
89316	chr15	-	2095	13	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	2	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	39.0387094219741	43	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCATTTGAGTTATCCT	NA	False	NA	NA	False	NA	NA	NA	58805574	58771782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_58772920_58776128_58776271_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
89317	chr13	-	1757	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	59	89	-3	-89	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	28	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334806	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
89318	chr2	-	1837	9	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	-1606	-7424	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	118.479956110728	4	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGCCTGGGTAGCTTTT	1500	False	NA	NA	False	NA	NA	NA	155987712	155972993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939_155986199_155986376_155986505_155987516
89319	chr1	+	3792	23	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-3	0	intron_retention	FALSE	non_canonical	0	0	junction_5	605.397806514222	2	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3139	False	NA	NA	False	NA	NA	NA	180396485	180428819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408178_180410391_180410440_180411294_180411472_180413407_180413556_180414822_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
89320	chr4	+	4384	6	FSM	ENSMUSG00000028527.19	ENSMUST00000106946.8	4360	6	149	-173	119	173	multi-exon	FALSE	canonical	3	20	junction_1	102.253410701062	335	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAACATGCCTCGGGT	NA	False	NA	NA	False	NA	NA	NA	101276634	101324365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_101276754_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
89321	chr17	+	918	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	33	-21	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	185.290312752718	165	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACCAAGGAGACCCCGC	4636	False	NA	NA	False	NA	NA	NA	25459176	25461751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25459339_25460037_25460232_25460661_25460836_25461132_25461197_25461427
89322	chr13	-	2654	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	289.717807811783	602	14	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCATGGTACTTGGT	NA	False	NA	NA	False	NA	NA	NA	6698780	6631216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671043_6671942_6672133_6675171_6675250_6685960_6686035_6698606
89323	chr19	+	3714	15	NNC	ENSMUSG00000040385.8	novel	1473	7	NA	NA	-40	6054	intron_retention	TRUE	non_canonical	0	0	junction_6	1913.89213971137	17	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTACCCTTCACGTTGC	3331	False	NA	NA	False	NA	NA	NA	4242117	4251473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4242271_4242743_4242876_4243020_4243871_4244465_4244690_4244770_4244906_4244980_4246082_4246179_4246384_4247113_4247254_4247340_4247402_4247474_4247590_4247671_4247782_4250271_4250370_4250462_4250578_4250926_4251057_4251327
89324	chr3	+	1947	9	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	207	57	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_8	221.180356270624	274	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCAAGCCATTGGACTC	NA	False	NA	NA	False	NA	NA	NA	30847230	30874238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
89325	chr16	-	3810	10	FSM	ENSMUSG00000044626.14	ENSMUST00000060673.8	3923	10	96	17	-54	-17	multi-exon	FALSE	canonical	3	141	junction_8	25.7197623013804	712	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTCTTTAAAAAGAAAGGT	NA	False	NA	NA	False	NA	NA	NA	21814317	21772583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802650_21803019_21814070
89327	chr1	-	686	2	Genic_Genomic	ENSMUSG00000100862.2	novel	678	1	NA	NA	-161	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	24653893	24653054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24653264_24653416
89328	chr2	+	1647	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	-2	93	intron_retention	FALSE	canonical	3	37	junction_3	3.77123616632825	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	NA	False	NA	NA	NA	104389526	104399270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389756_104390068_104390321_104397520_104397622_104398205
89329	chr13	-	2240	4	NIC	ENSMUSG00000074865.12	novel	2147	4	NA	NA	23	0	intron_retention	FALSE	canonical	3	40	junction_1	29.0095769627128	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62718990	62664608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_62666545_62667985_62668047_62668231_62668359_62718874
89330	chr13	+	717	2	Genic_Genomic	ENSMUSG00000059751.8	novel	795	1	NA	NA	-23	33	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTATTTGTGATCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108807113	108807964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_108807341_108807474
89331	chr7	-	1155	10	NNC	ENSMUSG00000109324.3	novel	2147	10	NA	NA	-5	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1119.16031133575	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCGCCCTGGGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	44635754	44626178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628151_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44635706
89332	chr8	-	826	3	FSM	ENSMUSG00000031633.5	ENSMUST00000155986.2	1275	3	3	446	3	-446	multi-exon	FALSE	canonical	3	7715	junction_1	86	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGGCCGGAAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	46664064	46661452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46661576_46662058_46662546_46663848
89333	chr3	-	2380	1	Intergenic	novelGene_3173	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33443	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAACCTTTTAAAATTT	NA	False	NA	NA	False	NA	NA	NA	104545766	104543386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_104543400_104545800
89334	chr19	-	3013	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	-24	-8	-17	8	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	325	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGGACCCACGAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	10502503	10477889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
89335	chr10	-	2885	14	ISM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	1244	-18	667	18	3prime_fragment	TRUE	canonical	3	153	junction_9	17.2955512972139	13	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTCACAGTACATAAAGCC	3081	False	NA	NA	False	NA	NA	NA	79743488	79730750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324
89336	chr4	+	2159	4	NNC	ENSMUSG00000028811.13	novel	647	3	NA	NA	-22	1528	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	863.960390038545	1150	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	833	False	NA	NA	False	NA	NA	NA	129083672	129092762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129083866_129090622_129090770_129090905_129091498_129091535
89337	chr5	-	5936	6	ISM	ENSMUSG00000106864.4	ENSMUST00000202254.4	4718	18	15947	883	1947	-367	3prime_fragment	FALSE	canonical	3	609	junction_2	21.3447885911292	16	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCTGTAATCCCAGCACT	NA	False	NA	NA	False	NA	NA	NA	31321529	31314231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31317206_31317291
89338	chr9	-	2727	18	NNC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	16	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	576.535722610808	13	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGAGGAGTGCTGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	36678854	36643710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676392_36676477_36678750
89340	chr5	-	1496	5	NNC	ENSMUSG00000029467.16	novel	4486	20	NA	NA	42075	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	500.838546839198	1	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAGAAAAATAACTGTC	NA	False	NA	NA	False	NA	NA	NA	122597605	122594402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597534
89341	chr2	-	4524	5	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	5	101740	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	141.816783209887	9	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGAAACCCTGAATAAGAC	NA	False	NA	NA	False	NA	NA	NA	177482106	177371843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177372221_177471131_177474890_177476043_177476105_177476312_177476529_177481994
89342	chr5	-	5255	20	FSM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	541	-1310	-63	1310	multi-exon	FALSE	canonical	3	1036	junction_17	105.58760524925	795	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCCACTAGGGCAGTCT	7818	False	NA	NA	False	NA	NA	NA	122639747	122593092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
89343	chr11	+	3044	14	ISM	ENSMUSG00000020290.15	ENSMUST00000020538.13	5145	26	26519	584	-2084	-584	3prime_fragment	FALSE	canonical	3	1745	junction_9	167.79181945064	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTCACTGACTTAA	NA	False	NA	NA	False	NA	NA	NA	23232559	23247013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
89344	chr15	-	2346	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-70	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	47	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGGAGGCATGAGTCTC	688	False	NA	NA	False	NA	NA	NA	36793833	36771021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772457_36772910_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
89345	chr7	-	3191	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	-46	3	-22	-3	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	266	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTGGCGTGTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	42342188	42309531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
89346	chr4	+	2672	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	10	1409	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	307.780457469281	5191	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGTAGACCAGGCTAGC	6634	False	NA	NA	False	NA	NA	NA	135975293	136003618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135975471_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992237_135995315_135995475_135998543_135998691_136000954_136001027_136002090
89347	chr19	+	3260	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	135	65	-16	-65	multi-exon	FALSE	canonical	3	652	junction_7	60.0436480355873	38	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGCCAATGCTGTTAC	NA	False	NA	NA	False	NA	NA	NA	10160386	10174173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
89348	chr2	-	4131	8	Antisense	novelGene_ENSMUSG00000039678.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGGCAGGAAGCAGAACTT	NA	False	NA	NA	False	NA	NA	NA	30035777	30023801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30023924_30024807_30024881_30025418_30025563_30026682_30026724_30027130_30027193_30027291_30027392_30030484_30030568_30032271
89349	chr15	+	1895	9	FSM	ENSMUSG00000009585.19	ENSMUST00000175714.8	1953	9	46	12	0	0	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	4	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAGACAAGATTAAGT	8292	False	NA	NA	False	NA	NA	NA	79776649	79792107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
89350	chr4	+	4512	13	NNC	ENSMUSG00000028252.21	novel	3484	13	NA	NA	-661	-3	intron_retention	FALSE	canonical	1	1	junction_1	132.784913801732	852	89	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTGTTTCTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	21727039	21750543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21727196_21727385_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
89351	chr2	-	4600	5	FSM	ENSMUSG00000078862.11	ENSMUST00000108930.9	1807	5	10	-2803	1	2803	multi-exon	FALSE	canonical	3	25	junction_3	8.13557004763649	750	152	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	177599080	177584526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177588804_177589962_177590024_177590229_177590357_177595474_177595530_177599000
89352	chr9	-	2052	9	FSM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	163	0	108	0	multi-exon	FALSE	canonical	3	1026	junction_1	123.439193026364	596	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	4933	False	NA	NA	False	NA	NA	NA	107512403	107491323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
89353	chrM	-	1520	1	Antisense	novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000065947.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	110	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTAGATGGCATATTGG	67	True	NA	NA	False	NA	NA	NA	11411	9891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_9900_11400
89354	chr14	+	1585	10	FSM	ENSMUSG00000021916.17	ENSMUST00000022476.9	2018	10	433	0	207	0	multi-exon	TRUE	canonical	3	31	junction_1	32.2321823686655	101	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGCTTCCCCATTTT	4009	False	NA	NA	False	NA	NA	NA	30723839	30733948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30723955_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
89355	chr9	+	884	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	-22	-64	-22	64	mono-exon	FALSE	NA	NA	NA	NA	NA	964	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACACATCCTTGGGTGGA	NA	False	NA	NA	False	NA	NA	NA	84306014	84306898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_84306000_84306900
89356	chr19	-	1734	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	73	810	-56	-358	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	3	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCAGCCCATGACTTTGT	NA	False	NA	NA	False	NA	NA	NA	15902350	15882851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
89357	chr19	+	2810	10	FSM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	-62	-306	-36	306	multi-exon	FALSE	canonical	3	35	junction_2	104.602716958317	699	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTAATAATCCCAGACTC	NA	False	NA	NA	False	NA	NA	NA	38043422	38063177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
89358	chr14	+	1981	9	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-43	-15	intron_retention	FALSE	canonical	2	2	junction_5	780.924732288586	2772	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATACATACTTTAATACTC	NA	False	NA	NA	False	NA	NA	NA	21881590	21895932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21888314_21888458_21888687_21890486_21890638_21893949_21894008_21895213
89359	chr7	-	1084	7	NIC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	-2	-9	intron_retention	FALSE	canonical	3	11064	junction_6	2230.78115366693	13	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTGTGTACGATGTGTG	NA	False	NA	NA	False	NA	NA	NA	44778149	44774990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
89360	chr13	-	2617	15	FSM	ENSMUSG00000025878.17	ENSMUST00000026997.12	2931	15	-19	333	-14	-18	multi-exon	FALSE	canonical	0	0	junction_10	39.2030949423795	459	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGTTTCACTCATAAGC	NA	False	NA	NA	False	NA	NA	NA	55248127	55176025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
89361	chr10	+	847	2	Genic_Genomic	ENSMUSG00000112825.2	novel	754	1	NA	NA	-90	10163	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCACAAGGTGAGGGAGA	NA	False	NA	NA	False	NA	NA	NA	56373346	56384353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_56374173_56384332
89362	chr4	+	3139	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33244	-1720	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	255.355308018716	75	87	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTACGGAATCTTAATA	NA	False	NA	NA	False	NA	NA	NA	146500235	146553029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500373_146502756_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
89363	chr4	-	1295	7	Antisense	novelGene_ENSMUSG00000073775.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTTTTCCTAG	4538	False	NA	NA	False	NA	NA	NA	108719309	108691846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108692053_108703146_108703205_108710361_108710417_108713342_108713417_108715119_108715191_108716470_108716554_108718561
89364	chr6	+	3184	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	93	-1660	25	1660	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATGTTTCTTGGTTTCCC	5965	False	NA	NA	False	NA	NA	NA	67244087	67262955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
89365	chr6	+	4414	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	443	10617	-4	2808	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATGCATTAAATCCTGC	5928	False	NA	NA	False	NA	NA	NA	67244050	67264103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
89366	chr4	+	2530	12	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	973	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCGCACCCCGAGCCCCA	257	False	NA	NA	False	NA	NA	NA	137469056	137523712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882_137486043_137523551
89367	chr9	+	3552	7	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	4	intron_retention	FALSE	canonical	3	16882	junction_2	1245.61934617103	19	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTCCACATGGTAG	NA	False	NA	NA	False	NA	NA	NA	64080655	64085952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64082583_64082865_64083499_64084222_64084760_64085002_64085087_64085178_64085300_64085504
89368	chr14	-	2290	7	NNC	ENSMUSG00000091563.9	novel	1961	7	NA	NA	-91822	181	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.70782512765993	3	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTTATTTGATATTTT	NA	False	NA	NA	False	NA	NA	NA	18451069	18336807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_18338138_18341636_18341820_18342497_18342630_18343579_18343743_18354336_18354488_18357666_18357781_18450852
89369	chr11	-	2994	14	FSM	ENSMUSG00000020530.15	ENSMUST00000172405.8	2950	14	-46	2	-5	-2	multi-exon	FALSE	canonical	3	41	junction_13	140.403560365518	402	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTAGCCTCTTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	84761610	84723188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_84724040_84725160_84725410_84727190_84727340_84727424_84727551_84728666_84728815_84730806_84731002_84731086_84731262_84732240_84732451_84744879_84744994_84749265_84749365_84751370_84751625_84753063_84753145_84760702_84760899_84761463
89370	chr16	-	2899	5	NIC	ENSMUSG00000022956.12	novel	560	6	NA	NA	-12	-5	intron_retention	FALSE	canonical	3	5653	junction_4	402.627309058886	12	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAACAGAGGGCGTGAGGA	935	False	NA	NA	False	NA	NA	NA	91728451	91722113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91722280_91722428_91722516_91723346_91725898_91727241_91727293_91728407
89371	chr5	-	1889	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	2	0	-2	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	9	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
89372	chr4	+	2825	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33230	-1876	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	272.559932247325	250	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146500249	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500544_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437_146551374_146551625
89373	chr15	-	3352	9	ISM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	353	16	333	-16	intron_retention	FALSE	canonical	1	385	junction_5	243.009130486902	519	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTACAGTTCACTGAATACT	NA	False	NA	NA	False	NA	NA	NA	98431792	98415554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398
89374	chr4	-	2354	4	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	0	-2	intron_retention	FALSE	canonical	3	295	junction_3	29.4656108408128	1	123	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9092	False	NA	NA	False	NA	NA	NA	155976226	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_155973626_155973890_155974054_155974125_155975873_155976087
89375	chrM	+	1108	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	36	0	-36	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATTATCGAAGACAAAATA	-2	True	NA	87	True	NA	NA	NA	14144	15252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
89376	chr4	-	3250	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	105.051839055244	836	18	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9495	False	NA	NA	False	NA	NA	NA	147894273	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845800_147860095_147860286_147891546_147891641_147893153_147893289_147893953
89377	chr1	+	1495	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-15	-262	-15	262	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAACACTAATGCATTTCC	NA	False	NA	NA	False	NA	NA	NA	60743075	60744570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60743100_60744600
89378	chr5	+	5045	1	NIC	ENSMUSG00000058013.12	novel	1792	10	NA	NA	22873	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	559	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGATAACTTAAAATCCTGT	NA	False	NA	NA	False	NA	NA	NA	93319234	93324279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_93319200_93324300
89379	chr14	-	2686	8	NNC	ENSMUSG00000096793.8	novel	1955	7	NA	NA	312	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.74963553055941	6	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACAGCAGTGTATGCTT	5761	False	NA	NA	False	NA	NA	NA	18659387	18639092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_18640231_18642105_18642289_18642964_18643097_18644049_18644213_18644944_18645080_18654751_18654903_18658123_18658238_18658717
89380	chr18	+	2411	8	NIC	ENSMUSG00000073639.7	novel	6515	7	NA	NA	3	1073	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	485.136463023655	1024	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAATTTGATTGTTGTGTC	10	True	NA	NA	False	NA	NA	NA	6765205	6790313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_6765333_6767643_6767717_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
89381	chr17	-	713	1	ISM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	3673	0	2427	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	422	False	NA	-75	True	NA	NA	NA	36145525	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_36144800_36145500
89382	chr16	-	2184	4	NNC	ENSMUSG00000038965.18	novel	2609	4	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	704.042770165437	6	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	NA	False	NA	NA	NA	17019351	16969878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16971192_16971424_16972147_16994275_16994372_17019298
89383	chr17	+	3621	2	Intergenic	novelGene_321	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTCTTGCAATTTGCA	NA	False	NA	NA	False	NA	NA	NA	94977822	94995274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_94977831_94991661
89384	chr2	+	1810	10	ISM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	2202	-282	-1026	0	3prime_fragment	FALSE	canonical	3	8907	junction_5	831.603018420997	12	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	9677	False	NA	NA	False	NA	NA	NA	75491806	75496465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
89385	chr11	+	3131	3	ISM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	16	110	-3	-110	intron_retention	FALSE	canonical	3	333	junction_1	8.5	8	57	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCACAACCTCTGTAAC	NA	False	NA	NA	False	NA	NA	NA	32176526	32182590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_32176718_32177751_32177950_32179848
89386	chr3	+	862	6	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	20	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5855.04061130237	6	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGCTTTAAACTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	137570267	137572581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146_137572195_137572279
89387	chr4	+	915	1	FSM	ENSMUSG00000082062.2	ENSMUST00000118517.2	552	1	-210	-153	-210	153	mono-exon	FALSE	NA	NA	NA	NA	NA	6	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAGACAGCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125397870	125398785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_125397900_125398800
89390	chr18	+	914	4	NIC	ENSMUSG00000024608.12	novel	597	5	NA	NA	-12	1	intron_retention	FALSE	canonical	3	20921	junction_1	2793.43850239569	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTTGGTTCTGGTGTT	NA	False	NA	-29	True	NA	NA	NA	60907724	60911614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_60907759_60909472_60910164_60910884_60910962_60911502
89391	chrM	+	1075	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	749	0	-749	mono-exon	FALSE	NA	NA	NA	NA	NA	3	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGGAAACATCACAAAAATC	-4	True	NA	4	True	NA	NA	NA	11741	12816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_12800
89392	chr2	-	2982	2	NNC	ENSMUSG00000049950.7	novel	1042	2	NA	NA	107	-121	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	14	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGTAAGATAAGAAAACCAC	2424	False	NA	NA	False	NA	NA	NA	3333573	3330106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_3330911_3331395
89393	chr4	-	4173	21	Antisense	novelGene_ENSMUSG00000028405.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTGCGGGAGAGGGGC	NA	False	NA	NA	False	NA	NA	NA	40199006	40143407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40143541_40163717_40163845_40164607_40164778_40167053_40167190_40175662_40175733_40175839_40176025_40176494_40176634_40177776_40177949_40178970_40179072_40180169_40180287_40181380_40181541_40182801_40182939_40183566_40183651_40184898_40185057_40186314_40186439_40188163_40188270_40189342_40189486_40190735_40190885_40193738_40193859_40196241_40196429_40197551
89394	chr14	+	1634	10	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-44	-2	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_8	710.149280081308	174	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCTGCAGTTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	21881589	21895945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890573_21893949_21894008_21895213
89395	chr14	+	4620	9	NNC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	-739	2636	intron_retention	FALSE	non_canonical	0	0	junction_1	0	568	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCGGAAGAGGCCGCGG	NA	False	NA	NA	False	NA	NA	NA	55913674	55919293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55916866_55916969_55917063_55917322_55917387_55917470_55917914_55918067_55918167_55918253_55918362_55918458_55918547_55918681_55918766_55918843
89396	chr7	+	1549	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	38	1	7	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495300	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
89397	chr12	-	1962	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	32	-885	32	885	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	333	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAAACCTTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	69629852	69623516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
89398	chr2	-	1177	10	NIC	ENSMUSG00000027170.13	novel	1283	11	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	1	98	junction_5	647.355494147125	34	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2662	False	NA	NA	False	NA	NA	NA	104847403	104830000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
89399	chr7	+	3750	8	NIC	ENSMUSG00000059851.16	novel	2774	9	NA	NA	-6	-5	intron_retention	FALSE	canonical	3	570	junction_2	59.1256013474187	507	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAGGAGGTTTTTTTTTT	615	False	NA	NA	False	NA	NA	NA	4743145	4750508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
89400	chr4	+	2168	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14331	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16.5	9	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145158978	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145176036_145176245_145176328
89401	chr19	-	2331	6	ISM	ENSMUSG00000024640.10	ENSMUST00000162053.8	2291	9	5717	4	-568	-1	3prime_fragment	FALSE	canonical	3	2829	junction_2	251.44255805253	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATTCATTGCCTGTGAA	NA	False	NA	NA	False	NA	NA	NA	15896269	15882494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569
89402	chr6	-	1525	11	NIC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	499	junction_1	2039.79651926363	62	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446821	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_51438414_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
89403	chr13	+	10860	29	NNC	ENSMUSG00000021218.11	novel	4303	11	NA	NA	-9	43315	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	902.947602272125	594	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCCTGCTTTTCCAGT	NA	False	NA	NA	False	NA	NA	NA	3588053	3661186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_3588344_3598862_3598971_3600988_3601089_3604441_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995_3616670_3616918_3617035_3617437_3617620_3618753_3618858_3619487_3619642_3620311_3620438_3623486_3627199_3631749_3632194_3634499_3635374_3638297_3638533_3639938_3640648_3644129_3644196_3644294_3644365_3645495_3645603_3646778_3646877_3649650_3649753_3649921_3650063_3650191_3650334_3660788
89404	chr17	-	2601	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	10	-5	-9	5	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	9566	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCGTTCGCCCAGTCCCC	NA	False	NA	NA	False	NA	NA	NA	47093572	47084827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
89405	chr4	+	4373	4	ISM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	27496	-173	-408	173	3prime_fragment	FALSE	canonical	3	206	junction_1	41.3037528561268	7	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAACATGCCTCGGGT	NA	False	NA	NA	False	NA	NA	NA	101304011	101324365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_101304477_101317696_101317870_101320145_101320265_101320749
89406	chr4	-	7160	4	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAGCAAGTGTAGCTTAA	NA	False	NA	NA	False	NA	NA	NA	147422610	147390189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147390230_147409227_147409333_147413436_147413565_147415723
89408	chr19	-	2637	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22702686	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773
89409	chr18	+	1711	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	2	-150	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1596.58722807728	32	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTGTGCTAGTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	77861693	77870205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866320_77866546_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
89410	chr12	+	1484	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2	820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1392.18023458012	3	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9257	False	NA	NA	False	NA	NA	NA	100165785	100173574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100165976_100168651_100168683_100169833_100169886_100169925_100169978_100171871_100171979_100172356_100172493_100172658
89411	chr10	+	5135	2	FSM	ENSMUSG00000020088.11	ENSMUST00000218968.2	483	2	-2757	-1895	1701	-4	multi-exon	FALSE	canonical	3	1281	junction_1	0	884	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACTTGCCTCTCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	61522558	61529072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61525685_61527063
89412	chr1	-	3306	17	NIC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	19	-3	combination_of_known_splicesites	FALSE	canonical	1	4	junction_16	135.814671519685	510	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTTTTGTAGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	58544065	58501932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58543930
89413	chr13	+	4719	16	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	35327	-6	35211	6	3prime_fragment	FALSE	canonical	0	0	junction_3	206.231972949557	57	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTTTGCTGTTTTGTT	9175	False	NA	NA	False	NA	NA	NA	13647462	13686860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
89414	chr19	+	883	2	Genic_Genomic	ENSMUSG00000067608.6	novel	781	1	NA	NA	-142	335	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATC	NA	False	NA	NA	False	NA	NA	NA	9260601	9261859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_9261080_9261454
89415	chr4	+	2451	19	NNC	ENSMUSG00000095567.9	novel	2785	19	NA	NA	5	-34	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	676.984419555567	5	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCCAGCTCATTGCTTT	NA	False	NA	NA	False	NA	NA	NA	156320471	156332026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_156320528_156320611_156320648_156321836_156321975_156322056_156322186_156323638_156323760_156323846_156323938_156324550_156324627_156324713_156324825_156325056_156325171_156325879_156325959_156326117_156326258_156327022_156327135_156327966_156328081_156328496_156328599_156329623_156329768_156329886_156330001_156330287_156330424_156331133_156331221_156331475
89416	chr11	-	2909	12	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	83	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	338.704044487317	5	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTACACTCCTCATATT	NA	False	NA	NA	False	NA	NA	NA	60702008	60678936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60698006_60701725
89417	chr8	-	8455	5	Intergenic	novelGene_1590	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	197	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTGGCCCTTTAGTTCC	NA	False	NA	NA	False	NA	NA	NA	20173003	20040026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_20042914_20043089_20044931_20169046_20170163_20170339_20170955_20171007
89418	chr7	-	3592	22	NIC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	376	64	intron_retention	FALSE	canonical	3	324	junction_21	166.887513543916	2	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGTCCTAGCCCCGTCC	9872	False	NA	NA	False	NA	NA	NA	126102151	126091260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
89419	chrX	+	3392	2	Antisense	novelGene_ENSMUSG00000051220.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAATCCGGAGAGCCCAGG	NA	False	NA	NA	False	NA	NA	NA	101187259	101200586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_101190440_101200374
89421	chr4	+	5517	11	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	83800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	112.518487369854	927	155	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATATAACAATGGATATCT	NA	False	NA	NA	False	NA	NA	NA	147576867	147681743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597378_147597462_147597596_147597930_147598100_147599018_147599761_147599862_147601666_147601873_147603397_147610087_147610199_147681606
89423	chr17	+	1736	4	NNC	ENSMUSG00000023067.15	novel	1913	3	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	584.097214130966	511	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4653	False	NA	NA	False	NA	NA	NA	29312748	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29312836_29317370_29317812_29318317_29318847_29319017
89424	chr3	+	2786	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	53.7001161948356	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6623	False	NA	NA	False	NA	NA	NA	108561255	108586156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108562067_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
89425	chr5	-	1794	7	NIC	ENSMUSG00000004642.14	novel	1906	8	NA	NA	0	-7	combination_of_known_splicesites	FALSE	canonical	3	27	junction_5	419.837270062263	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTAACATTGCCCTATAC	NA	False	NA	NA	False	NA	NA	NA	33809918	33797405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33809306_33809424_33809538
89426	chr11	-	2380	8	FSM	ENSMUSG00000045667.15	ENSMUST00000050226.7	2624	8	239	5	237	-5	multi-exon	FALSE	canonical	3	500	junction_3	27.0237990350305	337	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGACTTTGAGTGATC	NA	False	NA	NA	False	NA	NA	NA	72302300	72280944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72302069
89427	chr11	+	2221	6	ISM	ENSMUSG00000020290.15	ENSMUST00000020538.13	5145	26	33300	589	4697	-589	3prime_fragment	FALSE	canonical	3	1745	junction_1	228.695080839095	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTCCCTTCACTGA	NA	False	NA	NA	False	NA	NA	NA	23239340	23247008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
89428	chrM	-	1980	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTTTAAAATTGAACTT	77	True	NA	NA	False	NA	NA	NA	3466	1486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3500
89429	chr4	-	6883	4	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	98	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAAAAGGCGGGACTTCC	NA	False	NA	NA	False	NA	NA	NA	147422607	147394998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147395144_147409227_147409332_147415721_147416339_147416590
89430	chrX	+	3121	6	NIC	ENSMUSG00000067194.7	novel	5172	7	NA	NA	35	-1932	combination_of_known_splicesites	FALSE	canonical	3	222	junction_1	909.772147298432	5	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCGAAGAATAATGGTTTT	5382	False	NA	NA	False	NA	NA	NA	158155208	158170992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_158155412_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
89431	chr4	-	7289	4	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1337	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTCTCCTGGTTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	147422610	147390060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147390230_147409227_147409333_147413436_147413565_147415723
89432	chr17	+	3548	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	-3356	628	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40153887	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40154904_40157188
89433	chr19	-	4270	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACAAGACCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	22705270	22699843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22702496_22703438
89434	chr9	-	753	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	29	-14	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	22	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
89435	chr9	+	2314	4	ISM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	9716	-762	5101	762	3prime_fragment	FALSE	canonical	3	154	junction_3	4.10960933531265	2	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAATAAATAGGAAC	NA	False	NA	NA	False	NA	NA	NA	119949155	119954332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119949503_119949738_119949914_119951159_119951327_119952707
89437	chr16	-	4735	32	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-24	28344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2411.89463869776	3	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCCGGAACGCGGCATT	NA	False	NA	NA	False	NA	NA	NA	87292785	87251869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255628_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87269057_87269994_87270072_87271467_87271562_87272304_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280618_87280806_87280954_87281691_87281760_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
89438	chr4	-	2320	11	ISM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	37700	11	7791	-11	3prime_fragment	FALSE	canonical	3	1473	junction_1	76.9457601171111	8	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137485995	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882
89439	chr10	+	5894	13	NNC	ENSMUSG00000019897.9	novel	4314	3	NA	NA	-77820	4	intron_retention	FALSE	non_canonical	0	0	junction_1	176.594698391543	59	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTAATAGAAGCGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	105599107	105683698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_105599322_105601079_105601153_105601824_105601897_105615445_105615543_105629200_105629294_105633079_105633180_105659019_105659171_105661941_105662453_105665708_105665816_105668711_105668875_105676932_105677517_105678402_105681311_105682877
89440	chr11	-	3533	21	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	134	-606	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.956055036942	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGTAGGCTCTCCACAG	9141	False	NA	NA	False	NA	NA	NA	102209788	102195992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102196562_102196868_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
89441	chr19	-	897	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	62	-138	2	138	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	92	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGGGGTTAAGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	4087923	4085268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
89442	chr14	-	2094	8	Antisense	novelGene_ENSMUSG00000093156.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCTGCAGCGGGGCTGG	1725	False	NA	NA	False	NA	NA	NA	30295577	30287600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_30287636_30288897_30289016_30290118_30291096_30291911_30292289_30292917_30293002_30293106_30293201_30294162_30294286_30295291
89443	chr8	-	1683	5	ISM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	16552	8	397	-8	3prime_fragment	FALSE	canonical	3	353	junction_1	132.371635934591	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCCAGCCACTGTCTGCT	NA	False	NA	NA	False	NA	NA	NA	96598623	96590769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518
89444	chr3	-	5563	5	NNC	ENSMUSG00000027860.16	novel	818	5	NA	NA	490	-2	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	110.3653025185	193	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCCATAGTGCAGTTCT	NA	False	NA	NA	False	NA	NA	NA	102073756	102060900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088_102073128_102073513
89445	chr18	+	1265	7	ISM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	22	978	0	-429	5prime_fragment	FALSE	canonical	3	285	junction_6	11.4515889242013	49	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGGTGTTGTGACTCTTG	NA	False	NA	NA	False	NA	NA	NA	12301795	12313199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545
89446	chr14	-	2646	13	NNC	ENSMUSG00000022099.18	novel	4176	15	NA	NA	54	139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.8011818998979	1	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTGCTGGGATTAAAGC	NA	False	NA	NA	False	NA	NA	NA	70855931	70840923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70842297_70842407_70842497_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678
89447	chr11	-	3194	14	NIC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	29	251	intron_retention	FALSE	canonical	3	14	junction_11	146.224031730839	601	14	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTAAAGCCGCTTTCTG	NA	False	NA	NA	False	NA	NA	NA	84020397	83969494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_83970604_83972863_83972938_83975539_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84011907_84012015_84017813_84017922_84020362
89448	chr1	-	684	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	6	-36	6	36	mono-exon	FALSE	NA	NA	NA	NA	NA	14	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033757	65033073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
89449	chr11	+	2700	17	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	13340	600	7914	-598	internal_fragment	FALSE	canonical	3	463	junction_5	90.038099574569	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAACAACCCCAAAGGCTAC	NA	False	NA	NA	False	NA	NA	NA	75390985	75399675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592
89450	chr19	+	3325	19	NNC	ENSMUSG00000040385.8	novel	1473	7	NA	NA	-39	6218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1859.03015751311	3779	12	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGCCGGCCTGGCCTCCG	3332	False	NA	NA	False	NA	NA	NA	4242118	4251637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980_4245043_4245096_4246082_4246179_4246384_4247113_4247254_4247340_4247402_4247474_4247590_4247671_4247782_4250271_4250370_4250462_4250578_4250926_4251057_4251148_4251249_4251328_4251399_4251481
89451	chr11	+	416	2	ISM	ENSMUSG00000020272.9	ENSMUST00000102821.4	5026	19	5	69298	5	-43239	5prime_fragment	FALSE	canonical	3	41	junction_1	0	69	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGAGCGCCAGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	32483309	32505289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_32483560_32505123
89452	chr2	-	1616	6	ISM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	-20	143	-20	41	5prime_fragment	FALSE	canonical	3	26	junction_3	135.479297311434	425	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAATTTCACATGTGCA	NA	False	NA	NA	False	NA	NA	NA	177090133	177079836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
89453	chr2	-	3063	6	NNC	ENSMUSG00000085385.8	novel	933	6	NA	NA	-1	5392	intron_retention	TRUE	non_canonical	0	0	junction_1	35.8083789077361	448	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACATTTTTCTGCATGT	8326	False	NA	NA	False	NA	NA	NA	158203463	158190227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_158190349_158196770_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
89454	chr11	+	2652	3	NIC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	9	-110	intron_retention	FALSE	canonical	3	350	junction_1	6	19	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCACAACCTCTGTAAC	NA	False	NA	NA	False	NA	NA	NA	32176519	32182590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_32177950_32179848_32180054_32181573
89455	chr7	-	707	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	-23	-59	-23	21	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTACTGGCCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	92828875	92828168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92828200_92828900
89456	chr14	+	2935	7	NNC	ENSMUSG00000021771.15	novel	663	3	NA	NA	1999	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	880.995160158228	3	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGCCATGGTGTGCATGT	NA	False	NA	NA	False	NA	NA	NA	21885684	21895582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21886523_21886726_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
89457	chr11	+	4672	27	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	-45	-584	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	671.13070381084	1547	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCTTCACTGACTTAA	NA	False	NA	NA	False	NA	NA	NA	23205995	23247013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206165_23206410_23206718_23211834_23211967_23217661_23217764_23218622_23218691_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
89459	chr7	+	2874	5	NIC	ENSMUSG00000057229.12	novel	2387	6	NA	NA	15	-1	intron_retention	FALSE	canonical	3	96	junction_4	15.0332963783729	609	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCTGTGGCCTTTCCTCCC	1764	False	NA	NA	False	NA	NA	NA	25318863	25324975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
89460	chr12	+	906	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	23	212	-2	-212	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	NA	False	NA	NA	NA	21366412	21373608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
89461	chr15	-	1811	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	3	7	3	-7	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	372	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGGCCCTGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	75952758	75942045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
89462	chr7	+	1480	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	49	4	-6	-4	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	38	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTGCCAGACCTCTTC	NA	False	NA	NA	False	NA	NA	NA	142606524	142621667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
89463	chrX	+	1108	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	127	-25	-127	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATTGACCTGAAGTTCA	NA	False	NA	NA	False	NA	NA	NA	13068784	13069892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069900
89464	chr17	-	394	1	Intergenic	novelGene_158	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACCAGGCTGGCCTCAA	NA	False	NA	NA	False	NA	NA	NA	36542496	36542102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_36542100_36542500
89465	chr17	+	2429	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	48	-628	48	628	mono-exon	FALSE	NA	NA	NA	NA	NA	121	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	23	True	NA	NA	NA	40157291	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159700
89466	chr13	-	2411	1	FSM	ENSMUSG00000098238.2	ENSMUST00000183250.2	929	1	11	-1493	11	1493	mono-exon	FALSE	NA	NA	NA	NA	NA	148	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGGACGGCTTGATC	NA	False	NA	NA	False	NA	NA	NA	97595574	97593163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97593200_97595600
89467	chr13	+	4176	19	NNC	ENSMUSG00000021595.19	novel	4164	18	NA	NA	-225	-74	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	467.334165477148	533	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGATTCCCATAAGGTG	NA	False	NA	NA	False	NA	NA	NA	69759909	69783825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_69760053_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
89468	chr13	+	2824	19	FSM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	11	-1	11	1	multi-exon	FALSE	canonical	3	1529	junction_7	132.889457914055	544	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGCATGAGACTTGGAT	NA	False	NA	NA	False	NA	NA	NA	69760145	69782454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
89469	chrM	+	839	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	76	40	76	-40	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAACAAGGTAAGCATACTG	33	False	NA	-33	True	NA	NA	NA	145	984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_100_1000
89470	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
89471	chr15	-	1312	3	Antisense	novelGene_ENSMUSG00000037386.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	116	221	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	2125	False	NA	NA	False	NA	NA	NA	39110545	39105322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_39106174_39108258_39108492_39110317
89472	chr5	-	4869	2	Antisense	novelGene_ENSMUSG00000060961.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	120	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	89356927	89351752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_89353297_89353602
89473	chr1	-	1943	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2387.06528905576	15	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4436	False	NA	NA	False	NA	NA	NA	55127202	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117391_55117767_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
89474	chr5	-	1409	6	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	5084	junction_5	2801.23648412625	109	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548741	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65545785_65545904_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
89475	chr16	+	1705	2	Intergenic	novelGene_3869	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	146	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTGCACCTATCCTGG	3757	False	NA	NA	False	NA	NA	NA	93813192	93814997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_93814317_93814416
89476	chr17	+	2429	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	48	-628	48	628	mono-exon	FALSE	NA	NA	NA	NA	NA	26	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	23	True	NA	NA	NA	40157291	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159700
89477	chr17	-	2142	13	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	3	1217	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	230.428525915425	11	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTATATTAAAGTTACAATA	8740	False	NA	NA	False	NA	NA	NA	24470318	24448782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
89478	chr4	+	5347	24	FSM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	13	-766	13	766	multi-exon	FALSE	canonical	3	177	junction_17	193.960434840598	442	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TACAGCAAAATAAAATAATA	6058	False	NA	NA	False	NA	NA	NA	40970918	41026759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
89479	chr6	+	4348	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	35	29	15	-28	multi-exon	FALSE	canonical	3	250	junction_4	40.3554209493595	509	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATTAAATTTGGAGAGTT	NA	False	NA	NA	False	NA	NA	NA	83303032	83320729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
89480	chr16	-	3988	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	-40	3	-40	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATTCTTTCTGATGTGC	NA	False	NA	NA	False	NA	NA	NA	16176863	16130096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
89481	chr12	+	3679	2	Intergenic	novelGene_4384	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605039	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68608184_68609737
89482	chr1	-	3310	21	Antisense	novelGene_ENSMUSG00000098926.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCGCGCGCGGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	180428559	180396461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180396717_180401214_180401380_180405144_180405262_180406716_180406933_180408096_180408199_180410320_180410439_180411293_180411470_180413405_180413553_180414820_180414965_180416241_180416346_180416960_180417157_180418780_180418910_180420410_180420494_180421604_180421728_180422216_180422347_180424852_180424954_180425775_180425928_180426516_180426646_180427157_180427218_180427658_180427781_180428018
89483	chr12	+	4420	4	Genic_Genomic	ENSMUSG00000112972.2	novel	3845	1	NA	NA	-117929	120895	multi-exon	TRUE	non_canonical	0	0	junction_1	0	24	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	63500707	63743376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_63502182_63618591_63619704_63658141_63658160_63741560
89484	chr1	+	1755	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	50	2	-15	-2	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	1443	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCCTGGGTTGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	87141685	87156576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
89485	chr14	-	525	1	FSM	ENSMUSG00000063556.6	ENSMUST00000099431.6	468	1	-16	-41	-16	41	mono-exon	FALSE	NA	NA	NA	NA	NA	254	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCACCATAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	77489770	77489245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_77489200_77489800
89486	chr16	-	4382	31	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8	-87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_30	229.895038852275	2	130	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCAGTGTACACCAATT	NA	False	NA	NA	False	NA	NA	NA	8610164	8507550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511837_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8610099
89487	chr5	-	2247	6	NIC	ENSMUSG00000000568.16	novel	1670	8	NA	NA	-933	-6	intron_retention	FALSE	canonical	3	3192	junction_2	555.204250704189	97	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAATGTATTGGCTCTT	NA	False	NA	NA	False	NA	NA	NA	100115179	100108867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077
89488	chr10	-	3608	7	NNC	ENSMUSG00000020063.17	novel	3740	8	NA	NA	1279	483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	95.524865872714	305	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAATAGTGTTGGCTGC	NA	False	NA	16	True	NA	NA	NA	63171492	63154300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167592_63171362
89489	chrM	+	1511	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-269	136	-269	-136	mono-exon	FALSE	NA	NA	NA	NA	NA	18	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACGCGGCAAACTAACCAA	20	False	NA	NA	False	NA	NA	NA	9897	11408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11400
89490	chr6	-	1646	7	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-18	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	626.578451237796	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCCAGGAACTGGGCCTCT	NA	False	NA	NA	False	NA	NA	NA	124942389	124935779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939438_124941669_124941892_124942364
89491	chr2	+	8446	9	Antisense	novelGene_ENSMUSG00000082023.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	100	82	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTACAGAGAGAAACTTG	NA	False	NA	NA	False	NA	NA	NA	176738517	176969607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_176738890_176911245_176912382_176912435_176918447_176918530_176918980_176919059_176919212_176920365_176920426_176920627_176920803_176937154_176937189_176969550
89492	chr3	-	902	4	FSM	ENSMUSG00000036513.16	ENSMUST00000041954.10	892	4	-11	1	-4	-1	multi-exon	FALSE	canonical	3	13	junction_2	244.439949453621	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTATTTCTAGACAGTT	NA	False	NA	NA	False	NA	NA	NA	57559140	57553780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_57554298_57557462_57557637_57558842_57558921_57559007
89493	chr2	-	2982	3	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-15	1735	combination_of_known_splicesites	FALSE	canonical	3	155	junction_2	266.5	929	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTGTCTGTCCATC	2322	False	NA	NA	False	NA	NA	NA	177270018	177259261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177262087_177263226_177263288_177269922
89494	chr2	+	8108	14	NNC	ENSMUSG00000058793.15	novel	8396	13	NA	NA	56	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	118.061161563922	565	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGATTGTGCGTGTTTTT	5393	False	NA	NA	False	NA	NA	NA	132105216	132153966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
89495	chr9	+	5080	31	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	869.669151012166	82	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569719	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407_72654604_72654888_72655984_72656024
89496	chr2	-	711	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	58	-1	-5	1	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	33	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTCTGATCCTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	32178022	32168826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
89497	chr7	-	2580	18	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	-3	-183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	633.800903103716	3	70	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCCAGGGATGAACTCGA	NA	False	NA	NA	False	NA	NA	NA	33929685	33900937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901975_33902061_33902129_33902239_33902316_33903457_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920362_33926593_33926663_33928352_33928422_33928707_33928799_33929516
89498	chr13	+	914	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-13	37	-13	-37	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGACAGCAAAAAAAACAAA	7949	False	NA	NA	False	NA	NA	NA	74554514	74555428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
89499	chr1	-	9755	41	FSM	ENSMUSG00000026219.15	ENSMUST00000027421.13	9632	41	-131	8	-124	-8	multi-exon	FALSE	canonical	3	439	junction_40	206.047323144466	1090	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTTAGTTTTGTTACTT	7763	False	NA	NA	False	NA	NA	NA	84817156	84698917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84816949
89500	chr8	-	4223	6	NIC	ENSMUSG00000001910.6	novel	4344	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	136	junction_5	189.167227605629	786	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCTGTGCTCTGCTCA	NA	False	NA	NA	False	NA	NA	NA	85413783	85397107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969_85403882_85413676
89501	chr3	+	3961	13	NNC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	9	-6485	intron_retention	FALSE	non_canonical	0	0	junction_12	43.4210650363264	29	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCTCCACTGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	88742569	88787774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88744828_88753694_88753887_88761908_88762103_88762932_88763008_88763121_88763173_88763725_88763777_88764434_88764534_88765693_88765814_88766195_88766367_88770726_88770920_88776056_88776159_88777109_88777160_88787369
89502	chr17	-	1974	8	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	29	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	331.418349596065	4	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050154	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008896_7022228_7022285_7023246_7023343_7026877_7026962_7050030
89503	chr11	-	5969	16	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	390	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTGGCAACTTACGAGCAG	NA	False	NA	NA	False	NA	NA	NA	57952860	57932345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57932477_57933053_57933183_57933256_57933469_57933569_57933732_57934727_57934875_57938518_57938693_57938799_57938971_57940520_57940914_57941606_57941731_57941825_57942032_57942448_57942555_57943402_57943557_57946291_57946436_57947877_57947989_57948085_57948213_57949382
89504	chr7	+	1263	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-20	-11	-20	11	mono-exon	FALSE	NA	NA	NA	NA	NA	69	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396374	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
89505	chr8	+	5884	6	NNC	ENSMUSG00000087153.9	novel	862	5	NA	NA	-179	12471	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7.73563184232549	1010	103	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTGAAGTTTCTTCAAC	2718	False	NA	NA	False	NA	NA	NA	19732285	19760223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_19732672_19737619_19737917_19747519_19747753_19754056_19756785_19757665_19758083_19758400
89506	chr9	-	4576	1	ISM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	54517	232	54268	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	509	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGCCTCTGACTGTC	7894	False	NA	NA	False	NA	NA	NA	108086640	108082064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_108082100_108086600
89507	chr1	+	433	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	-53	103	-53	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	4	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGCCAAAGCTCCAGCTA	NA	False	NA	NA	False	NA	NA	NA	43228262	43228695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43228300_43228700
89508	chr2	-	4534	6	Fusion	ENSMUSG00000081574.2_ENSMUSG00000074529.11_ENSMUSG00000095362.8	novel	1576	4	NA	NA	16	2795	multi-exon	FALSE	canonical	0	0	junction_3	138.656409877077	4	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTGCTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	177567381	177470788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_177474890_177476043_177476105_177476312_177476440_177483519_177483608_177497169_177497297_177567351
89510	chr15	+	3760	25	NNC	ENSMUSG00000022369.14	novel	3144	22	NA	NA	-23314	137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.1406898017904	3539	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGCAGGTAGACCAGTTGC	NA	False	NA	NA	False	NA	NA	NA	55397489	55483471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55397734_55402425_55402547_55403517_55403606_55406719_55406781_55411537_55411636_55418719_55418840_55420653_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033
89511	chr4	-	2515	5	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	28	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAATGATGAAATGGCAGA	NA	False	NA	NA	False	NA	NA	NA	145178220	145159009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159031_145173064_145173341_145174455_145174574_145176036_145176245_145176328
89512	chr5	+	869	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	980	274	52	1	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	439	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121343523	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
89513	chr1	-	1847	18	ISM	ENSMUSG00000073678.5	ENSMUST00000097739.5	10583	27	-17	38400	-15	12890	5prime_fragment	FALSE	canonical	3	24	junction_9	5.82085500087199	4	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGACATGTTTGCATAAT	NA	False	NA	NA	False	NA	NA	NA	54596858	54550552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_54550662_54551059_54551127_54551755_54551808_54551930_54552005_54553995_54554072_54560450_54560529_54563474_54563527_54564526_54564574_54567670_54567755_54569275_54569332_54570012_54570119_54571180_54571248_54572577_54572631_54575113_54575272_54582196_54582369_54587097_54587274_54590135_54590290_54596592
89514	chr4	+	6085	6	Genic_Genomic	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-310161	63717	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	101	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146385256	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146387500_146387693_146388192_146388399_146388614_146741810_146742237_146803533_146805770_146805866
89515	chr15	-	4323	34	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	12	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCACACAGTAAACCGCAG	NA	False	NA	NA	False	NA	NA	NA	12935255	12826150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12826253_12827311_12827378_12833913_12834746_12837365_12837460_12842140_12842254_12842385_12842617_12846152_12846293_12848135_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865183_12866646_12866729_12867679_12867753_12878738_12878913_12881707_12881834_12883251_12883350_12885071_12885179_12889701_12889811_12890117_12890256_12890570_12890632_12901186_12901246_12902667_12902769_12905682_12905785_12907406_12907480_12912595_12912642_12913984_12914143_12915424_12915529_12924138_12924284_12926076_12926158_12926289_12926396_12928948_12929040_12929748_12929804_12935082
89516	chr13	-	2675	3	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-44655	-98	intron_retention	FALSE	canonical	3	12	junction_2	78	17	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAAGCCTTTGCCTATCA	NA	False	NA	NA	False	NA	NA	NA	66175260	66124254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66126651_66126851_66126979_66175108
89518	chr7	+	5372	14	Antisense	novelGene_ENSMUSG00000030766.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGAAAGTTGGTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	122878595	122917679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_122879340_122882999_122886237_122891258_122891429_122893694_122893929_122895632_122895792_122896719_122896810_122899711_122899828_122902920_122903000_122905597_122905677_122906187_122906302_122907507_122907637_122913636_122913719_122913866_122913935_122917608
89519	chr11	+	2695	11	NIC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	-29	-3955	combination_of_known_splicesites	FALSE	canonical	3	262	junction_2	2165.33416358769	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	55360481	55391709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_55360628_55376451_55376565_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
89520	chrM	+	898	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	53	6	53	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	113	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAGAAATATGTCTGATA	51	False	NA	-99	True	NA	NA	NA	2803	3701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
89521	chr8	-	7368	48	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	3	-8	combination_of_known_splicesites	FALSE	canonical	3	8	junction_47	314.87799414954	4	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAAACTTTTGTCTGAA	NA	False	NA	NA	False	NA	NA	NA	96534056	96446791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96533960
89522	chr9	+	2435	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	-31	-1	-1	1	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	594	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	NA	False	NA	NA	False	NA	NA	NA	54493763	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
89523	chr8	+	1896	5	Intergenic	novelGene_1634	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_4	30.1775993080961	125	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTATTAAAGAGACTTTCC	NA	False	NA	NA	False	NA	NA	NA	43806966	43825439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43807132_43809132_43809201_43811094_43811168_43818030_43818205_43824023
89524	chr2	+	10016	34	NNC	ENSMUSG00000000194.14	novel	6134	18	NA	NA	-122701	-334	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	216.508193793671	855	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCAATAAAGATTCCATGA	107	False	NA	NA	False	NA	NA	NA	30919626	31108453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30920374_30921814_30923198_30926126_30926267_30926553_30926675_30927166_30927301_30930416_30930526_30942995_30943180_30944032_30944230_30945438_30945587_30948900_30949029_30972984_30973092_30974035_30974100_30986039_30986183_30987101_30987162_30995252_30995372_31041164_31041259_31041989_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858_31081903_31097690_31097741_31099078_31099163_31100460_31100583_31104255
89525	chr6	+	2313	4	NIC	ENSMUSG00000023505.14	novel	1917	5	NA	NA	1	-1	intron_retention	FALSE	canonical	3	850	junction_3	35.5246393366632	149	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTCTTGTCTTGCC	1363	False	NA	NA	False	NA	NA	NA	124807198	124810663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124807614_124808324_124809403_124809528_124809633_124809947
89526	chr18	-	4979	17	NNC	ENSMUSG00000057440.9	novel	4981	17	NA	NA	-4	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	27.1727689976565	85	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTCTTCAAATAATGCTT	-26	True	NA	NA	False	NA	NA	NA	7626870	7347970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444108_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626728
89527	chr4	+	9368	8	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-103	260519	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	19.6863155620386	1184	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTTAAATATTAGTCCCA	NA	False	NA	NA	False	NA	NA	NA	147390027	147678710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147409230_147409335_147415724_147422672_147435367_147435525_147601163_147601261_147670378_147672013_147678310_147678463_147678638
89528	chr18	+	1821	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	293	357	30	-143	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	398	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTAGTTTGTGTGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	77861721	77870212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
89529	chr6	+	2286	12	ISM	ENSMUSG00000029833.18	ENSMUST00000120428.8	3940	19	72693	120	-5055	-120	3prime_fragment	FALSE	canonical	3	354	junction_2	78.7126797308618	49	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCAGAGTTCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	37920438	37943111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
89530	chr2	+	1640	3	FSM	ENSMUSG00000087283.2	ENSMUST00000131457.2	566	3	-29	-1045	-29	1045	multi-exon	FALSE	canonical	3	174	junction_2	3	584	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGAGAATCTCAGATATG	9317	False	NA	NA	False	NA	NA	NA	60241839	60243968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_60242062_60242190_60242353_60242712
89531	chr10	+	4122	2	Genic_Genomic	ENSMUSG00000112523.2	novel	871	1	NA	NA	119	4307	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGACCCGCTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	106019000	106024059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_106021549_106022485
89532	chr9	-	4580	16	Fusion	ENSMUSG00002076266.1_ENSMUSG00000064145.13	novel	3924	16	NA	NA	-660	-3	multi-exon	FALSE	canonical	3	34	junction_15	215.945013577274	3	40	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAAAGCCTGTGGAGTC	NA	False	NA	NA	False	NA	NA	NA	108531587	108480148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108530771
89533	chr17	-	7207	22	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	-16	35837	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2430.045844682	3930	79	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGCCAAGCAGCCGGGCG	NA	False	NA	NA	False	NA	NA	NA	6367709	6320777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6320866_6330870_6330976_6337199_6337255_6339258_6339347_6340829_6340953_6345197_6345309_6345995_6346078_6347502_6347602_6348125_6348257_6348423_6348516_6349637_6349693_6351163_6351269_6351675_6351727_6353493_6353579_6354520_6354610_6354850_6354917_6355641_6357973_6358072_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
89534	chr3	-	932	2	Genic_Genomic	ENSMUSG00000047676.7	novel	885	1	NA	NA	-78	63	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCTGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	149779257	149778231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_149778249_149778342
89536	chr14	+	1350	4	NNC	ENSMUSG00000016831.13	novel	709	4	NA	NA	1156	1399	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	215.903270522293	1	45	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGCGAGTGCTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	52524346	52531213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52524447_52524757_52524935_52528947_52529578_52530770
89537	chr16	-	1686	3	ISM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	-66	2	-1	-2	intron_retention	FALSE	canonical	3	101	junction_1	8.5	47	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGCTGTTTGGCTTGGCT	7209	False	NA	NA	False	NA	NA	NA	17348977	17345943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_17346605_17346798_17346940_17348093
89538	chrX	-	3608	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	-87	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	482.089546224052	1	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTAATTGTGCCCATGT	NA	False	NA	NA	False	NA	NA	NA	93256555	93232316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93240998_93243319_93243465_93244495_93244584_93246415_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256376
89539	chr18	+	1115	8	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	20	-145	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1951.95856638863	322	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTAGTTTGTGTGGGGG	NA	False	NA	NA	False	NA	NA	NA	77861711	77870210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866583_77868975_77869057_77869498_77869650_77870000
89540	chr7	-	4645	6	NNC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	0	-311	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	289.810558813857	416	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATACAACAGTAACCCTG	NA	False	NA	NA	False	NA	NA	NA	118454907	118441770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118442787_118442883_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
89541	chr2	-	3057	11	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	72	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	82.0273734798329	363	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTTATGGGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	153474579	153458854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_153460234_153460337_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474183_153474513
89542	chr11	+	2923	25	Fusion	ENSMUSG00000004018.10_ENSMUSG00000068314.6	novel	2724	14	NA	NA	0	-241	multi-exon	TRUE	non_canonical	0	0	junction_13	125.82690380925	557	5	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCCTCGCAGCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	26337201	26543621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_26337311_26347745_26347805_26349648_26349710_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324_26421786_26426552_26426699_26433155_26433327_26436960_26437019_26439772_26439894_26448916_26449048_26484208_26484306_26485537_26485645_26497840_26497927_26499294_26499364_26500024_26500076_26541586_26541728_26543385
89543	chr1	-	2730	6	FSM	ENSMUSG00000117310.3	ENSMUST00000027232.15	4129	6	111	1288	47	-11	multi-exon	FALSE	canonical	3	1976	junction_5	190.472465201666	766	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCTGAAATGTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	30988725	30980671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_30982405_30983012_30983088_30983616_30983748_30984018_30984112_30985118_30985721_30988629
89544	chr17	+	4012	11	NNC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	-12	-75	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	40.8783561313319	478	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCTGGGCTGTCACTACG	8818	False	NA	NA	False	NA	NA	NA	79142983	79155662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572_79153617_79153697
89545	chr11	+	4539	6	NNC	ENSMUSG00000020521.8	novel	4452	9	NA	NA	14151	13875	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGAATGGAGGCTAAGAG	NA	False	NA	NA	False	NA	NA	NA	86389706	86403726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_86393789_86395091_86395208_86397619_86397725_86402414_86402492_86402649_86402714_86403631
89546	chr1	-	4804	3	Genic_Genomic	ENSMUSG00000103975.2	novel	507	1	NA	NA	-3348	2851	multi-exon	FALSE	non_canonical	0	0	junction_1	0	987	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAGAGGAAAGAAGAATTT	NA	False	NA	NA	False	NA	NA	NA	131864056	131857350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_131857508_131858775_131861981_131862614
89547	SIRV1	-	1504	6	NNC	SIRV1A	novel	1561	6	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2275.40988834979	18441	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	11606	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1378_7614_7815_10282_10367_10444_10792_10897_11194_11406
89548	chr4	-	4958	4	NNC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-19830	1576	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	128.141414937647	7	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAATGATACTGTCAGCAC	NA	False	NA	NA	False	NA	NA	NA	58519233	58433678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58437635_58486476_58487225_58504621_58504782_58519139
89549	chr4	+	2339	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	27.3072792493137	199	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145159006	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145160315_145160385_145173065_145173196_145176036_145176245_145176328
89550	chrM	-	735	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTCATGGAAGGACGTAG	900	False	NA	60	True	NA	NA	NA	15288	14553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14600_15300
89551	chrM	+	1624	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	200	0	-200	mono-exon	FALSE	NA	NA	NA	NA	NA	3	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAACCTAAGCCTAAAAACA	-4	True	NA	4	True	NA	NA	NA	11741	13365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13400
89552	chrX	-	804	1	Antisense	novelGene_ENSMUSG00000067147.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCCACCTTCTTCCCCTT	NA	False	NA	NA	False	NA	NA	NA	165638051	165637247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_165637200_165638100
89553	chr18	+	3342	15	FSM	ENSMUSG00000037236.17	ENSMUST00000235199.2	3107	15	-74	-161	72	161	multi-exon	FALSE	canonical	3	37	junction_1	318.569899099467	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTAGAGAACTTCATT	NA	False	NA	NA	False	NA	NA	NA	35695423	35723952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_35695575_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
89554	chr3	+	1787	12	Antisense	novelGene_ENSMUSG00000002227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	933	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACAATGTGCTTCATGG	NA	False	NA	NA	False	NA	NA	NA	104702154	104708086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702556_104702639_104702765_104703011_104703099_104703175_104703300_104704077_104704156_104704283_104704477_104704589_104704713_104706713_104706924_104707012_104707110_104707259_104707366_104707590_104707748_104708000
89555	chr3	-	2019	9	Antisense	novelGene_ENSMUSG00000027940.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	117	4	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCCGCCTGCTCCGCCC	9408	False	NA	NA	False	NA	NA	NA	90008203	89986967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89987169_89993750_89993885_89994759_89994878_89994978_89995052_89995707_89995782_89997101_89997165_89997314_89997384_90006831_90007272_90007356
89556	chr10	-	1885	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181091.8	1876	11	-9	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	660.841047453924	4939	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	NA	False	NA	NA	NA	93725646	93696790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
89557	chr13	-	5598	6	NNC	ENSMUSG00000045136.7	novel	2182	4	NA	NA	-18	3486	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	235.944400230224	7	127	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGGTTGTTTGTTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	34314467	34307244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34310261_34310309_34311978_34312128_34312515_34312854_34312966_34313228_34313338_34314159
89558	chrM	+	1841	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064358.1	novel	1824	1	NA	NA	482	217	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCCCCAATACTAAAAAAC	123	False	NA	NA	False	NA	NA	NA	9088	13782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_9096_11948
89559	chr4	+	8225	12	Fusion	ENSMUSG00000085334.8_ENSMUSG00000028820.14	novel	3465	10	NA	NA	-3	-30	intron_retention	FALSE	canonical	3	313	junction_11	236.299816558932	1277	55	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACATTAATAAAGTAATTTA	NA	False	NA	NA	False	NA	NA	NA	126915113	126930776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126923619_126929648_126930355_126930443_126930724
89560	chr19	-	4794	4	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	66	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22705039	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22702140_22702244_22704734_22704824
89562	chr17	-	3476	6	FSM	ENSMUSG00000024026.14	ENSMUST00000236335.2	9865	6	58	6331	1	1594	multi-exon	FALSE	canonical	3	2881	junction_3	241.0424029087	3090	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACTATGTGAAACTCCAAA	NA	False	NA	NA	False	NA	NA	NA	30831575	30810240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441
89563	chr7	+	2388	10	NNC	ENSMUSG00000025485.14	novel	3406	10	NA	NA	-2	0	intron_retention	FALSE	non_canonical	0	0	junction_1	82.425873919286	7	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGTTTAACATTCATGAT	NA	False	NA	NA	False	NA	NA	NA	140437395	140443056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_140437492_140437686_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
89564	chr9	-	586	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	27	6	27	-6	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	224	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAATGTGCGTCGTCATT	NA	False	NA	NA	False	NA	NA	NA	78275432	78274339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
89565	chr9	+	881	3	NNC	ENSMUSG00000032478.15	novel	527	6	NA	NA	2	391	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	87.5	77	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTAAAAAAAGAAAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	109661850	109665083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109661876_109662263_109662364_109664327
89566	chr17	+	1825	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1039.19561231808	103	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135347	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138781_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
89567	chr1	+	3647	10	Antisense	novelGene_ENSMUSG00000026000.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCGGCGCGTTTACCGC	NA	False	NA	NA	False	NA	NA	NA	67040275	67078025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_67042716_67043496_67043571_67043948_67044124_67046024_67046210_67048386_67048534_67049069_67049205_67060015_67060224_67073281_67073402_67077652_67077748_67077957
89568	chr4	-	2423	12	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	-32	-19	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	455.139012457905	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATATTTCTGAGGCCA	NA	False	NA	NA	False	NA	NA	NA	137509534	137469062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137509471
89569	chr12	+	3710	12	FSM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	204	136	4	28	multi-exon	FALSE	canonical	3	1736	junction_1	190.905151474506	715	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTTTTCATTTTACTGT	NA	False	NA	NA	False	NA	NA	NA	111504653	111513050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_111504674_111504788_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
89570	chr16	-	1551	6	ISM	ENSMUSG00000022858.17	ENSMUST00000023564.10	1369	8	2544	-701	-54	701	3prime_fragment	FALSE	canonical	3	1235	junction_5	349.562354952589	29	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAGTAGAACTGGAATGAA	4662	False	NA	NA	False	NA	NA	NA	22071453	22064496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356
89571	chr13	-	8301	19	Fusion	ENSMUSG00000113135.2_ENSMUSG00000113990.2	novel	478	3	NA	NA	-78932	54074	multi-exon	TRUE	non_canonical	0	0	junction_1	62.3047072315558	108	117	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTGAGTCGGCTCGCT	1651	False	NA	NA	False	NA	NA	NA	65846989	65426646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_65426800_65427072_65427155_65428075_65428201_65432732_65432829_65439634_65440119_65442208_65442297_65443411_65443540_65443875_65448429_65452157_65452304_65480661_65481009_65485181_65485422_65487061_65487131_65545894_65546514_65695158_65695838_65696085_65696241_65763841_65763903_65764103_65764231_65767910_65768025_65846954
89572	chr6	+	2942	17	ISM	ENSMUSG00000029833.18	ENSMUST00000120428.8	3940	19	37501	120	-6909	-120	3prime_fragment	FALSE	canonical	3	354	junction_7	68.1826590857235	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAGCAGAGTTCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	37885246	37943111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
89573	chr17	-	2078	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	87	484	-2	-484	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	5	111	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAGAAGGGGGTGGGGT	NA	False	NA	NA	False	NA	NA	NA	36149111	36145296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
89574	chr1	+	10161	34	Antisense	novelGene_ENSMUSG00000098259.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	853	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAGATGGCGGCTAGCC	NA	False	NA	NA	False	NA	NA	NA	162499358	162568085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162501225_162504258_162504386_162504922_162505028_162505578_162505793_162507063_162507171_162507388_162507627_162508328_162508466_162508789_162508903_162509886_162510093_162511625_162511826_162515684_162515785_162518707_162518805_162519943_162520194_162520304_162520493_162523845_162523933_162525001_162525841_162526445_162526601_162529748_162529959_162531936_162534193_162535336_162535545_162536424_162536680_162537096_162537256_162537851_162538399_162540872_162540926_162541810_162541957_162542960_162543052_162543157_162543289_162543847_162543931_162546258_162546480_162548049_162548175_162548997_162549109_162550678_162550857_162552272_162552439_162567893
89575	chr19	+	3301	16	NNC	ENSMUSG00000040385.8	novel	1473	7	NA	NA	-2	6195	intron_retention	FALSE	non_canonical	0	0	junction_6	1881.42837463691	210	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCGCGCACCGTCCCCT	3369	False	NA	NA	False	NA	NA	NA	4242155	4251614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244906_4244980_4246082_4246179_4246384_4247113_4247254_4247340_4247402_4247474_4247590_4247671_4247782_4250271_4250370_4250462_4250578_4250926_4251057_4251327_4251399_4251481
89576	chr6	-	2855	8	FSM	ENSMUSG00000029922.16	ENSMUST00000114823.8	2992	8	121	16	102	-16	multi-exon	FALSE	canonical	3	27	junction_7	1191.73940789358	8	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTGG	NA	False	NA	NA	False	NA	NA	NA	39396589	39374753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396400
89577	chr11	+	2888	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	75	-136	68	136	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	4	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAACTGTTTTCTATCAT	NA	False	NA	NA	False	NA	NA	NA	20151506	20176992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
89578	chr1	+	7421	31	NIC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	-91	-7	intron_retention	FALSE	canonical	3	1945	junction_14	332.574370964183	42	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATCTATTTGGTTCA	NA	False	NA	NA	False	NA	NA	NA	185095149	185160550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
89579	chr4	+	4952	21	NNC	ENSMUSG00000028405.10	novel	3832	21	NA	NA	310	3375	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	73.4492341689142	15	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTGTGTGTGTGTGTGTG	-16	True	NA	NA	False	NA	NA	NA	40143390	40201713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40199498
89580	chr19	+	811	5	NNC	ENSMUSG00000024661.8	novel	929	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2444.09670174893	18	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4924	False	NA	NA	False	NA	NA	NA	9960064	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9960348_9961544_9961584_9961641_9961692_9961923_9962050_9962144
89582	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1194	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
89583	chr3	+	3647	20	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	5012.94929694482	8	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	NA	False	NA	NA	NA	102927915	102965502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201_102964542_102964945
89585	chr2	-	4796	2	NIC	ENSMUSG00000086563.2	novel	768	3	NA	NA	-32	2826	intron_retention	FALSE	canonical	3	31	junction_1	0	203	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTAGGT	NA	False	NA	NA	False	NA	NA	NA	150548828	150543629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_150548201_150548603
89587	chr6	-	1476	5	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-4	1	intron_retention	FALSE	canonical	3	6089	junction_1	1441.13000367767	213	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	NA	False	NA	NA	NA	125142572	125138814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125139065_125139174_125140004_125140101_125140400_125142233_125142275_125142514
89588	chr9	+	1927	10	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	61.6044731420626	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174126	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108178699_108178790
89589	chr14	-	4576	3	Intergenic	novelGene_654	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGGTTTCTTCCATTA	NA	False	NA	NA	False	NA	NA	NA	123971294	123908487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_123908828_123908968_123911103_123969192
89590	chr2	-	3012	4	NNC	ENSMUSG00000083817.2	novel	2135	3	NA	NA	-48855	5185	intron_retention	FALSE	non_canonical	0	0	junction_1	34.8839345385363	272	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGCAGGAAATCCGAGAT	NA	False	NA	NA	False	NA	NA	NA	176969611	176912080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176913485_176919014_176920428_176920629_176920730_176969516
89591	chrX	+	3168	18	FSM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	711	122	711	-122	multi-exon	FALSE	canonical	3	331	junction_3	37.9662935558211	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTTATCGTCCAGATC	NA	False	NA	NA	False	NA	NA	NA	149830876	149872395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_149830978_149849176_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
89592	chr11	-	8379	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	-4	3	-4	-3	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	1264	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTGTGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	95896770	95847991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
89594	chrM	+	3774	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-2396	0	-2396	0	mono-exon	FALSE	NA	NA	NA	NA	NA	135	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-6	True	NA	NA	False	NA	NA	NA	7770	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_11500
89595	chr15	+	1233	3	ISM	ENSMUSG00000041841.9	ENSMUST00000045356.9	835	4	0	465	0	0	intron_retention	FALSE	canonical	3	16622	junction_1	3716	96	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGTGGTGATCTAAG	2248	False	NA	NA	False	NA	NA	NA	5146126	5148157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_5146167_5146768_5146905_5147100
89596	chr17	-	576	6	NNC	ENSMUSG00000052146.17	novel	887	6	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2381.91758043808	4	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTCCACTTGTGTATGT	NA	False	NA	NA	False	NA	NA	NA	27854213	27849398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849481_27850173_27850230_27851252_27851331_27853045_27853218_27853297_27853450_27854177
89597	chr17	-	861	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCGGGCGCTCGCGCGGA	NA	False	NA	NA	False	NA	NA	NA	40157991	40157130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40157100_40158000
89598	chr7	+	1149	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	435	0	-246	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGACCACACCCTTCTC	NA	False	NA	NA	False	NA	NA	NA	46495266	46504616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
89599	chr8	+	4875	5	NNC	ENSMUSG00000071793.13	novel	948	5	NA	NA	-169	599	intron_retention	FALSE	non_canonical	0	0	junction_2	583.426730618336	8	22	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACTTAAGGATGTGGGAAG	NA	False	NA	NA	False	NA	NA	NA	20030545	20046487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20030757_20035860_20036096_20039783_20039904_20041811_20045771_20046137
89600	chr4	+	1457	3	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-43	735	multi-exon	FALSE	non_canonical	0	0	junction_2	2134.5	76	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGCTGTTTGGTTTTTGT	5	True	NA	NA	False	NA	NA	NA	12232789	12234686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12232839_12232904_12233260_12233633
89601	chr15	+	1085	9	NNC	ENSMUSG00000056851.15	novel	3222	14	NA	NA	22	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	173.224159328311	332	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	165	False	NA	NA	False	NA	NA	NA	102387093	102407324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102387183_102391594_102391724_102392589_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
89602	chr16	+	2451	15	NNC	ENSMUSG00000039427.15	novel	1755	13	NA	NA	0	3882	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_13	70.5294843541714	287	59	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGCCAGCTCCACTGCC	1280	False	NA	NA	False	NA	NA	NA	5051484	5066658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304_5063254_5065320_5065423_5066550
89603	chr17	+	4404	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	6	1378	6	-1378	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	349	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAATGAGATTTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	33508523	33524837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
89605	chr19	-	3715	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	82	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGACCGTTTTCTCGTTG	NA	False	NA	NA	False	NA	NA	NA	22705271	22699839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700544_22700755_22701133_22702637
89606	chr7	-	2276	1	FSM	ENSMUSG00002076377.1	ENSMUST00020182363.1	109	1	-1622	-545	-1622	545	mono-exon	FALSE	NA	NA	NA	NA	NA	242	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTAAACCATTGCAAAGGG	NA	False	NA	NA	False	NA	NA	NA	45109243	45106967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107000_45109200
89607	chr17	-	1904	4	NNC	ENSMUSG00000063888.8	novel	2606	7	NA	NA	2419	-1195	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1070.56246898535	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGGTGTGTATACCTTT	NA	False	NA	NA	False	NA	NA	NA	47091144	47086027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_47086663_47088972_47089198_47089335_47089446_47090210
89608	chr6	+	5551	2	NIC	ENSMUSG00000007458.15	novel	2976	6	NA	NA	2977	-3	intron_retention	FALSE	canonical	3	1312	junction_1	0	4	88	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCTGGCTTTGTCGTTTGT	5920	False	NA	NA	False	NA	NA	NA	122288934	122294636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_122293136_122293286
89609	chr3	+	1423	3	NIC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	6	intron_retention	FALSE	canonical	3	13832	junction_1	318.5	59	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	NA	False	NA	NA	NA	137570349	137572585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_137570458_137570893_137571395_137571771
89610	chr8	+	1535	10	ISM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	68	143	-23	-69	intron_retention	FALSE	canonical	3	2216	junction_5	92.9258299750032	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGTGACAAATCGATGTCT	NA	False	NA	NA	False	NA	NA	NA	84441873	84449834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515
89611	chr3	-	1152	3	NIC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-12	-416	combination_of_known_junctions	FALSE	canonical	3	120	junction_2	9.5	361	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGTACCCTGAGTTCTGA	NA	False	NA	NA	False	NA	NA	NA	41482891	41476097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_41476891_41477378_41477680_41482833
89612	chr11	-	1873	5	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5758.22685381533	40	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	97673209	97668863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97668991_97669090_97670504_97672079_97672289_97672631_97672716_97673169
89613	chr9	-	2974	2	NNC	ENSMUSG00000097177.9	novel	2265	3	NA	NA	1094	1469	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	576	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAACACAAGTGAAAATT	NA	False	NA	NA	False	NA	NA	NA	88739760	88736728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88739196_88739253
89614	chr9	+	1948	9	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	84.1857136039126	7	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	108174130	108179501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174396_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177082_108177726_108177914_108178271_108178428_108178518
89615	chr11	-	2236	12	NNC	ENSMUSG00000005204.13	novel	2313	11	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	280.296065433535	29	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8500	False	NA	NA	False	NA	NA	NA	69572702	69563940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69564283_69564389_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
89616	chr17	+	5682	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	0	698	0	-698	multi-exon	TRUE	canonical	3	368	junction_15	33.7979652859003	412	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTCATGAGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	29879568	29924255	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
89617	chr17	+	1396	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	48	405	48	-405	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTCTTAGAGGGACAAGT	NA	False	NA	23	True	NA	NA	NA	40157291	40158687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40158700
89618	chr11	-	1252	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	81	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1252.4809601569	4	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGGGATTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	120472369	120468940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469398_120469920_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
89619	chr3	-	1654	6	NNC	ENSMUSG00000028081.7	novel	977	6	NA	NA	109	-7	at_least_one_novel_splicesite	FALSE	canonical	1	122	junction_3	3876.72683587585	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTTTGCTTCTGTCCAT	NA	False	NA	NA	False	NA	NA	NA	86049900	86045253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_86045418_86045789_86045900_86046346_86046556_86047752_86048734_86049004_86049109_86049814
89620	chr11	-	2226	8	NNC	ENSMUSG00000045667.15	novel	3572	8	NA	NA	1433	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	193.173074559303	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGTTGATGACTTTGA	NA	False	NA	NA	False	NA	NA	NA	72301104	72280950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72301021
89621	chr4	+	3272	5	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	-230	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	184.711937892492	1171	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGTCATTGGTTTACT	NA	False	NA	NA	False	NA	NA	NA	98614740	98626707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98624962_98625063
89622	chr5	+	941	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	276	-12	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	306	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTCCTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
89624	chr2	-	3316	2	NNC	ENSMUSG00000059555.7	novel	3255	2	NA	NA	174	252	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	37	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTGT	8563	False	NA	NA	False	NA	NA	NA	25086597	25082725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25085938_25086493
89625	chr17	+	1606	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	48	195	48	-195	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGCGGGCCATAAGCT	NA	False	NA	23	True	NA	NA	NA	40157291	40158897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40158900
89626	chr4	-	8890	5	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	160	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACCGTTTCTCGTTGGTG	NA	False	NA	NA	False	NA	NA	NA	42231653	41877206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41878432_41878477_41880988_42207622_42207630_42226364_42231135_42231275
89627	chr2	+	4947	13	NIC	ENSMUSG00000026643.17	novel	4461	14	NA	NA	-43	-6	intron_retention	TRUE	canonical	3	230	junction_9	26.3502055652956	4	110	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATTGTTTTGAGTGTTTT	944	False	NA	NA	False	NA	NA	NA	3285205	3329908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_3285444_3305848_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
89628	chr5	+	5145	10	FSM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	0	-117	0	117	multi-exon	FALSE	canonical	3	652	junction_7	47.9165942028438	733	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGCTGGACTTCAG	NA	False	NA	NA	False	NA	NA	NA	93241295	93322934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93319197
89629	chrX	-	3959	2	NNC	ENSMUSG00000051220.3	novel	5302	2	NA	NA	241	-1241	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTTTCCATTCATTTTC	NA	False	NA	NA	False	NA	NA	NA	101200456	101186562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_101190440_101200374
89630	chr1	+	3868	15	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-5532	178	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	120.497692415876	1599	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCCAAAAGCTGATGTTAA	NA	False	NA	NA	False	NA	NA	NA	132399570	132433575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132399806_132405044_132405266_132411789_132411816_132412483_132412540_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
89631	chr9	-	4253	24	NNC	ENSMUSG00000032182.16	novel	2014	9	NA	NA	10	41597	intron_retention	TRUE	non_canonical	0	0	junction_1	40.000992426252	746	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCCGCGCCGCCCGGGCC	6096	False	NA	NA	False	NA	NA	NA	21504096	21458380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21458527_21480750_21480876_21485781_21485883_21486702_21486813_21490692_21490804_21491602_21491782_21494333_21494425_21494805_21494887_21497460_21497546_21497737_21497829_21498194_21498333_21498418_21498509_21498584_21498699_21498802_21498880_21499142_21499214_21499342_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
89632	chr14	-	1037	6	FSM	ENSMUSG00000013701.14	ENSMUST00000163379.2	682	6	-35	-320	-2	-25	multi-exon	FALSE	canonical	2	27	junction_4	1693.07502491768	3	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGTCATAATTCCAACA	NA	False	NA	NA	False	NA	NA	NA	31923838	31902143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31920925_31920985_31923599
89634	chr11	+	1285	2	ISM	ENSMUSG00000071866.13	ENSMUST00000213200.2	1450	5	2021	-5	2021	-3	3prime_fragment	FALSE	canonical	3	36680	junction_1	0	955	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTTTGTCCTTGTTTG	2092	False	NA	NA	False	NA	NA	NA	6368332	6369809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_6369286_6369477
89635	chr4	-	3236	17	NNC	ENSMUSG00000028452.8	novel	3316	17	NA	NA	8	-58	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	981.369419484834	1	98	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAGAAAAAAAAAAGAC	9823	False	NA	NA	False	NA	NA	NA	43000425	42980020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983376_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986155_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993912_42995895_42996069_42996231_42996344_43000161
89636	chr1	-	2485	11	ISM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	2658	4910	2227	866	3prime_fragment	FALSE	canonical	3	5903	junction_8	880.805653932807	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGTTTGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	86284464	86277350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277
89637	chr4	-	930	4	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	12265	0	-153	0	3prime_fragment	FALSE	canonical	3	9851	junction_2	447.097304845377	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTAGTTTTGTCATAATT	NA	False	NA	NA	False	NA	NA	NA	119139536	119135177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342
89638	chrM	-	2074	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGGTGGCTGCTTTTAG	1	True	NA	7	True	NA	NA	NA	3702	1628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1600_3700
89639	chr18	-	4319	1	Genic_Genomic	ENSMUSG00000024487.6	novel	NA	NA	NA	NA	12134	1010	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCTACATCTGATCCTT	NA	False	NA	NA	False	NA	NA	NA	40340257	40335938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_40335900_40340300
89640	chr11	+	1848	6	Antisense	novelGene_ENSMUSG00000019173.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	934	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCCAGGCTCCGGCCT	NA	False	NA	NA	False	NA	NA	NA	100605837	100628977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_100606991_100607585_100607677_100608666_100608790_100609255_100609409_100610740_100610995_100628903
89641	chr1	+	1461	2	Antisense	novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	NA	False	NA	NA	False	NA	NA	NA	24652292	24653893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24653581_24653720
89642	chr4	+	3968	8	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-33	41581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	151.897253135809	155	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTATGCAATTATGTCCATC	NA	False	NA	NA	False	NA	NA	NA	146206867	146256585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146240246_146240316_146250678_146250737_146251579_146251707_146253158_146254619_146254690
89643	chr2	-	1231	8	NNC	ENSMUSG00000005233.17	novel	1352	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	303.334529413804	73	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	69036501	69024238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_69024693_69024776_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
89644	chr1	+	982	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	234	0	107	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	3	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCCGAGCATTCCAGTA	NA	False	NA	NA	False	NA	NA	NA	86454447	86458200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
89645	chr4	+	936	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	55	1303	0	247	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	38	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATTCATTCTTTAAAGGC	NA	False	NA	NA	False	NA	NA	NA	116542795	116556716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
89646	chr5	+	3077	6	NIC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	0	-8	intron_retention	FALSE	canonical	3	7026	junction_3	410.477965303864	118	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTACCTGTGTGGCAT	NA	False	NA	NA	False	NA	NA	NA	108048437	108056863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108052761_108055054_108055144_108055762
89647	chr5	+	1466	10	NNC	ENSMUSG00000025538.16	novel	1656	10	NA	NA	-6	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	151.398011957527	211	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGATTTATTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	129875845	129892271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479_129891845_129892003
89648	chr15	-	5300	1	Intergenic	novelGene_3278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCAAGGTAGTAGAACCC	2130	False	NA	NA	False	NA	NA	NA	39110540	39105240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_39105200_39110500
89649	chr4	+	4827	6	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-46	2573	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	71.6703564941601	101	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGTAACTTTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	147390084	147420764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724_147416849_147417016_147418414_147418837
89650	chr10	+	2814	14	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-40	0	intron_retention	FALSE	canonical	0	0	junction_1	94.4407393789241	8	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	75399941	75422025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
89651	chr8	+	2836	15	NNC	ENSMUSG00000025316.17	novel	1521	12	NA	NA	-1774	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	89.5131104295651	620	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGCTCAGTGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	122674714	122752917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_122675157_122676524_122676660_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
89652	chr10	-	2483	7	ISM	ENSMUSG00000020063.17	ENSMUST00000105442.3	3740	8	3277	667	1234	-667	3prime_fragment	FALSE	canonical	3	219	junction_4	26.3528408757428	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTCATAAGATAAATTGTA	NA	False	NA	-29	True	NA	NA	NA	63171537	63155503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414
89653	chr9	+	955	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	644	0	-318	0	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119957553	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
89654	chr8	+	4338	16	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-3	-4	intron_retention	FALSE	canonical	0	0	junction_1	262.220483986706	228	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGAGGCTCACTTGA	5074	False	NA	NA	False	NA	NA	NA	107330007	107396874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330981_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
89655	chr4	-	3438	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	14	-5	combination_of_known_junctions	FALSE	canonical	3	105	junction_3	79.7927871983984	315	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCGATGTGTGGTTCTG	NA	False	NA	NA	False	NA	NA	NA	58553884	58435259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553729
89656	chr9	+	6502	21	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	62	1540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	97.5642864986979	67	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGGTCAGGGTAAGATT	NA	False	NA	NA	False	NA	NA	NA	56979385	57037190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56979501_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017860_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
89657	chr4	-	2498	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	2364	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	462.517312608739	3	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCCAGAGCTGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	137521177	137469050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137521051
89658	chr15	+	4620	19	NIC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	-33	-163	combination_of_known_junctions	FALSE	canonical	1	10	junction_1	163.420573829054	4	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGCATTCATATATACT	7	True	NA	NA	False	NA	NA	NA	12117883	12185606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_12118034_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
89659	chr15	-	2160	3	ISM	ENSMUSG00000051786.16	ENSMUST00000041656.14	5357	25	-256	14916	-30	3113	5prime_fragment	FALSE	canonical	3	50	junction_1	1	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTTAAAAAAGCCTTTGT	NA	False	NA	NA	False	NA	NA	NA	89007345	88999528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_89000459_89004712_89004877_89006279
89661	chr11	-	3610	20	NNC	ENSMUSG00000035575.12	novel	3877	19	NA	NA	10	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	111.483896952781	23	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTCATTGAGAATGTTAA	NA	False	NA	NA	False	NA	NA	NA	79853183	79824782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_79826398_79826627_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
89662	chr3	-	2745	6	Antisense	novelGene_ENSMUSG00000041355.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCTCCGAAAGACCGGAAA	8320	False	NA	NA	False	NA	NA	NA	88495286	88486941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88486993_88487185_88487336_88488274_88489408_88489960_88491192_88494170_88494250_88495185
89663	chr1	+	3255	11	Fusion	ENSMUSG00000103711.2_ENSMUSG00000026641.14	novel	1115	10	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	27	junction_10	65.466709097067	109	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGAGTTGTATTTAATT	6736	False	NA	NA	False	NA	NA	NA	171238879	171247918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599_171247669_171247758
89664	chr12	+	900	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	143	22	118	-22	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	5776	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAACAAAAGAATTTA	1684	False	NA	NA	False	NA	NA	NA	111679837	111700632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
89665	SIRV5	+	2543	15	NNC	SIRV5A	novel	2029	16	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	3198.85665240771	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	1000	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2048_3271_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858_10992_11311
89667	chr11	+	1410	10	FSM	ENSMUSG00000020708.13	ENSMUST00000133131.2	1394	10	-16	0	-16	0	multi-exon	FALSE	canonical	3	2261	junction_6	179.113523556954	154	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4520	False	NA	NA	False	NA	NA	NA	106146963	106153946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
89669	chr6	+	881	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	-106	-388	-106	388	mono-exon	FALSE	NA	NA	NA	NA	NA	132	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAACCAAAACACCAAAT	NA	False	NA	NA	False	NA	NA	NA	116150591	116151472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_116150600_116151500
89670	chr14	+	1594	11	ISM	ENSMUSG00000021957.8	ENSMUST00000225857.2	1962	14	3022	7	941	-7	3prime_fragment	FALSE	canonical	3	1879	junction_3	145.587808555524	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAATCCTCAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	30282587	30295574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
89671	chr11	-	1814	4	NNC	ENSMUSG00000058546.9	novel	560	5	NA	NA	28	0	intron_retention	FALSE	non_canonical	0	0	junction_3	7729.13976814727	33	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5991	False	NA	NA	False	NA	NA	NA	78074382	78071760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78071824_78071979_78072050_78072242_78073813_78074271
89672	chr8	+	6823	4	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-111	-211	intron_retention	FALSE	canonical	3	200	junction_2	374.369692505505	1678	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTAGATGTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	20697873	20727055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120
89673	chr11	+	5033	3	Intergenic	novelGene_2286	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	48	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGAGTAGCTGGGTAAG	NA	False	NA	NA	False	NA	NA	NA	57433740	57450918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57434139_57446082_57450365_57450565
89674	chrX	+	4197	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	-88	-515	-88	515	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	495	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATTTTTAAAAAGCTAC	NA	False	NA	NA	False	NA	NA	NA	163202694	163217427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
89675	chr16	+	6401	29	NNC	ENSMUSG00000025616.15	novel	3205	18	NA	NA	3	12353	intron_retention	FALSE	non_canonical	0	0	junction_11	113.671311648264	22	125	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTCGGCGCCGCCTCGC	NA	False	NA	NA	False	NA	NA	NA	87251933	87292758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87273563_87273776_87276013_87276678_87277762_87277851_87278601_87278659_87279747_87279905_87279994_87282633_87282721_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592_87290674_87291223_87291316_87292616
89676	chr9	+	2719	11	NNC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	-13	-1	intron_retention	FALSE	non_canonical	0	0	junction_10	182.120289918504	46	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGAACCTTTTATAGT	9093	False	NA	NA	False	NA	NA	NA	15217530	15228265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15227343_15227562
89677	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
89678	SIRV6	+	1080	6	NNC	SIRV6A	novel	1311	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9774.15061066689	12	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_3165_7104_7227_7814_7924_10724_10819_11031_11109_11205
89679	chr18	+	2649	9	FSM	ENSMUSG00000024234.8	ENSMUST00000025077.7	2651	9	2	0	2	0	multi-exon	FALSE	canonical	3	181	junction_2	18.3711730708738	797	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGATAACAGTATTTCTA	-10	True	NA	NA	False	NA	NA	NA	4375593	4397330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
89680	chr17	+	1684	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	45	-5	intron_retention	FALSE	non_canonical	0	0	junction_4	1843.54175095114	3	111	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATAGCTGAATTTTGTT	3081	False	NA	NA	False	NA	NA	NA	35816959	35821664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35821037_35821184_35821269_35821338
89681	chr4	-	3389	4	NNC	ENSMUSG00000038668.15	novel	3437	4	NA	NA	-97	3	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_3	104.818361411009	304	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGGTTCTGGTCTGTGC	33	False	NA	NA	False	NA	NA	NA	58553725	58435251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553627
89682	chr10	-	3975	4	FSM	ENSMUSG00000038876.13	ENSMUST00000214896.2	781	4	-3	-3191	-3	-15	multi-exon	FALSE	canonical	3	10	junction_3	95.3601360923712	505	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCTTTTAAACGTAACAT	NA	False	NA	NA	False	NA	NA	NA	29238046	29220188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237979
89683	chr6	+	2547	14	ISM	ENSMUSG00000029833.18	ENSMUST00000120428.8	3940	19	56804	123	12394	-123	3prime_fragment	FALSE	canonical	3	354	junction_4	74.085589396407	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGAAGCAGAGTTCTTT	4038	False	NA	NA	False	NA	NA	NA	37904549	37943108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_37904576_37908288_37908436_37920347_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
89684	chr6	+	817	3	Antisense	novelGene_ENSMUSG00000057666.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGGCTGCAGTCCGTAT	3126	False	NA	NA	False	NA	NA	NA	125139805	125142572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_125140021_125140136_125140400_125142233
89685	chr3	-	5799	12	NNC	ENSMUSG00000040943.13	novel	9021	12	NA	NA	1	470	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	35.1295124450667	638	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCACCAGGATCTCACTT	NA	False	NA	NA	False	NA	NA	NA	133250128	133172817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_133173952_133175036_133175401_133177100_133177239_133179356_133179447_133182245_133182394_133185102_133185127_133185893_133186103_133187094_133187189_133188999_133189079_133191272_133194479_133219789_133219935_133249960
89686	chr17	-	942	5	Antisense	novelGene_ENSMUSG00000006818.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCGTGCTGAGAGGAACA	NA	False	NA	NA	False	NA	NA	NA	13239011	13227078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_13227273_13229405_13229522_13232317_13232498_13233910_13234323_13238971
89687	chr5	-	3917	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	9	-1558	9	1558	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	374	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTAGCTTGTGTCATGTT	1483	False	NA	NA	False	NA	NA	NA	3646576	3632419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
89688	chr3	+	2028	7	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	1516	50490	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2214.19627379528	1527	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGATAGCCAGGGCTATA	1414	False	NA	NA	False	NA	NA	NA	88484771	88546216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88485660_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495683_88546012
89689	chr8	+	705	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	-23	-91	-23	91	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGGGACTCAGAGCT	7094	False	NA	NA	False	NA	NA	NA	19542928	19543633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_19542900_19543600
89690	chr3	+	873	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6351.56427090996	80	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571317_137571787_137571902_137572146
89691	chr11	-	5282	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	1	-4700	1	4520	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	506	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTTAGGTCCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	4391104	4369547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
89692	chr5	-	4682	20	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	-17	-18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	177.262173393941	1208	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGCCTTCCATTGCAGA	NA	False	NA	NA	False	NA	NA	NA	31337505	31313366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330724_31330856_31331111_31331434_31331575_31331840_31337227
89693	chr17	+	2044	2	Antisense	novelGene_ENSMUSG00000092687.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGCCGCCCGCCTCGGCC	NA	False	NA	NA	False	NA	NA	NA	35169227	35171448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35171146_35171322
89694	chr1	-	4726	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	4	-132	combination_of_known_junctions	FALSE	canonical	3	41	junction_16	109.88493510003	52	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTCATATTT	NA	False	NA	NA	False	NA	NA	NA	133589112	133547731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133582177_133583082_133583137_133588974
89695	chr13	+	8703	23	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113723.3_ENSMUSG00000113760.2	novel	569	4	NA	NA	-46868	157	intron_retention	TRUE	non_canonical	0	0	junction_3	72.0395896666468	716	63	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGGAGAGTAACCTTATG	NA	False	NA	NA	False	NA	NA	NA	66044981	66270807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66045092_66052247_66052375_66052573_66052635_66076322_66076466_66076915_66077599_66085377_66085456_66090898_66091041_66092498_66092671_66093849_66093904_66094994_66096523_66173059_66173991_66179066_66179381_66179595_66179943_66186206_66186334_66186533_66186542_66187806_66190141_66242422_66242453_66267485_66267578_66267777_66267839_66269026_66269065_66269232_66269708_66269875_66270241_66270324
89696	chrX	+	2267	5	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.9283223311695	675	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	133618684	133622666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619114_133619211_133619668_133619742_133620375_133620475_133620782
89697	chr17	-	2270	12	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-8901	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	209.966152329291	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAGCCTTTTGTTTGAAG	NA	False	NA	NA	False	NA	NA	NA	45735511	45702808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730727_45735409
89698	chr4	+	3905	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33230	-869	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	276.067423326662	86	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTAGGCCTATGCAATTA	NA	False	NA	NA	False	NA	NA	NA	146500249	146553880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500544_146502756_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437_146551818_146551973
89699	chr9	-	2438	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	-11	9	-11	-9	multi-exon	TRUE	canonical	3	469	junction_6	51.6454257412987	720	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGATTTCTGCTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	64160924	64093060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
89700	chr1	-	714	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	125	-161	-125	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCACCAACAGCTACCATT	NA	False	NA	NA	False	NA	NA	NA	24653893	24653179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653200_24653900
89701	chr3	+	1922	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1192.63932998563	289	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986979	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997327_90006944
89702	chrM	+	606	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	74	1	74	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACCCACCAAACTCATGC	224	False	NA	NA	False	NA	NA	NA	8000	8606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_8000_8600
89703	chr3	+	3327	1	Genic_Genomic	ENSMUSG00000008604.12	novel	NA	NA	NA	NA	3233	741	mono-exon	FALSE	NA	NA	NA	NA	NA	544	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGGCAGTGTTAACCACA	NA	False	NA	NA	False	NA	NA	NA	88474446	88477773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_88474400_88477800
89705	chr1	-	4373	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	6	3	combination_of_known_splicesites	FALSE	canonical	3	25	junction_16	101.178060863015	119	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTAGTTCTTATCATTAT	NA	False	NA	NA	False	NA	NA	NA	133589112	133547605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588993
89706	chrM	-	1925	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	62	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCCTCTTTTGGCTATA	77	True	NA	NA	False	NA	NA	NA	3466	1541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3500
89707	chr2	+	1074	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11384	153	multi-exon	FALSE	non_canonical	0	0	junction_1	0	176	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAGGAGGGGCCTGGGGA	NA	False	NA	NA	False	NA	NA	NA	11413650	11426184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623_11426004_11426143
89709	chr17	+	2886	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	1	-1056	1	0	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	371	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	66418640	66427498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
89710	chr4	+	5651	7	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	-16	43377	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	83.6573700014264	12	50	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGTTCTGAGGATTG	NA	False	NA	NA	False	NA	NA	NA	146206925	146258381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158_146257801_146257993
89711	chr11	-	1424	3	FSM	ENSMUSG00000018543.9	ENSMUST00000107576.2	624	3	19	-819	19	819	multi-exon	FALSE	canonical	0	0	junction_1	0.5	22	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAACTGACTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	97666725	97661487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97662564_97663541_97663642_97666477
89712	chr8	-	1292	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	257	376	3	-376	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	1	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATCTCCCTGCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	46664064	46660209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
89713	chr9	+	5308	9	Intergenic	novelGene_1060	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	724	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAGATCTGAGCCAGAA	NA	False	NA	NA	False	NA	NA	NA	58124468	58157005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129152_58136640_58136691_58137110_58137369_58137772_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156825
89714	chr13	-	3446	16	NNC	ENSMUSG00000034617.8	novel	3861	15	NA	NA	20	74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	148.940256478898	2	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGGATCCTGTGCTATT	NA	False	NA	NA	False	NA	NA	NA	68730193	68709407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727675_68727816_68728669_68728835_68729414_68729477_68729921
89715	chr13	-	3668	9	Fusion	ENSMUSG00000094499.4_ENSMUSG00000114729.2	novel	3029	10	NA	NA	-9	197867	multi-exon	TRUE	non_canonical	0	0	junction_1	7.55707450009592	539	41	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCAGGGAACATCTAGTT	NA	False	NA	NA	False	NA	NA	NA	66549941	66290777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66291060_66472023_66472517_66472651_66473796_66474417_66474906_66475418_66476232_66476681_66476825_66490608_66490670_66490865_66490993_66549824
89716	chr9	-	3768	18	NNC	ENSMUSG00000032182.16	novel	2014	9	NA	NA	29	9269	intron_retention	FALSE	non_canonical	0	0	junction_1	43.2054719077129	723	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTAGAACGATCTGAGG	6153	False	NA	NA	False	NA	NA	NA	21504039	21490708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21490806_21491602_21491782_21494333_21494425_21494805_21494887_21497460_21497546_21497737_21497829_21498193_21498333_21498418_21498509_21498584_21498699_21498802_21498880_21499342_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823
89717	chr17	+	1344	3	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	48	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	1897.5	10	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATAGCTGAATTTTGTTTT	3084	False	NA	NA	False	NA	NA	NA	35816962	35821666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35820298_35820436_35820877
89718	chr7	+	3924	18	NNC	ENSMUSG00000030983.5	novel	1244	7	NA	NA	2	55609	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	739.136768554885	332	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGCCACTCCCGCCCGTG	1324	False	NA	-72	True	NA	NA	NA	133311078	133378483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_133311258_133315916_133315992_133316627_133316709_133318549_133318680_133319327_133319516_133320832_133321008_133322435_133323128_133323879_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335855_133335936_133336035_133338914_133339163_133344156_133344529_133350569_133350724_133361131_133361643_133378330
89719	chr3	+	754	8	NNC	ENSMUSG00000068749.10	novel	1239	9	NA	NA	342	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1029.82699161221	1	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATAGTCTGTGATC	NA	False	NA	NA	False	NA	NA	NA	108164583	108187290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176191_108187050
89720	chr4	+	2169	4	Intergenic	novelGene_2034	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	45	junction_2	250.152397994147	759	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	2259	False	NA	NA	False	NA	NA	NA	146289317	146319729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146312866_146312972_146317966
89721	chr9	+	737	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-41	-206	-41	206	mono-exon	FALSE	NA	NA	NA	NA	NA	62	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	96777669	96778406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
89722	chr2	+	3762	10	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	49.931310842688	9	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATCAATGAAATGTCCAT	NA	False	NA	NA	False	NA	NA	NA	152068795	152123759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092321_152092376_152100568_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
89723	chr2	-	480	4	FSM	ENSMUSG00000062997.7	ENSMUST00000080861.6	946	4	465	1	-37	-1	multi-exon	FALSE	canonical	3	27807	junction_3	5721.16085733967	558	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCTTCATGTTTTACA	NA	False	NA	NA	False	NA	NA	NA	38895171	38891592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38891778_38894118_38894201_38894743_38894881_38895095
89724	chr8	+	3973	8	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	20	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	32.8111479313271	756	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATAAGCCTTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	85635295	85641143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637776_85638013_85640158_85640599
89725	chr9	-	5207	22	NNC	ENSMUSG00000086728.3	novel	452	2	NA	NA	2537	23574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	449	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTACCCGGGAAATCCCGC	NA	False	NA	NA	False	NA	NA	NA	57035645	56983659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_56983914_56988377_56988487_56993864_56994079_56996656_56996837_57001718_57001826_57002580_57002864_57004003_57004255_57005106_57005262_57005388_57005553_57008399_57008489_57011151_57011273_57011877_57012088_57012860_57012978_57014635_57014875_57015989_57016174_57017860_57018437_57020829_57020997_57024662_57024838_57025351_57025445_57026374_57026470_57032450_57032659_57034429
89726	chr5	-	2355	13	Antisense	novelGene_ENSMUSG00000032754.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	101	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCGGAGCAGCCTGGCCA	NA	False	NA	NA	False	NA	NA	NA	120671930	120649265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_120649343_120651177_120651398_120657694_120657844_120657927_120657984_120658667_120658723_120658842_120658962_120659051_120659197_120659823_120659925_120665803_120665926_120667572_120667727_120668378_120668462_120669145_120669212_120670922
89727	chr11	+	1156	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	10	-172	-10	multi-exon	FALSE	canonical	3	35417	junction_1	0	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGCATATATGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
89728	chr3	+	2172	17	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	44	-5826	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	300.989818920425	7	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTGTAACTGAGGCTCA	NA	False	NA	NA	False	NA	NA	NA	63883570	63924174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887614_63887676_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
89729	chr2	-	3336	1	Intergenic	novelGene_2864	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTATATCTTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	181506014	181502678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_181502700_181506000
89730	chr19	+	5268	19	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-21262	-617	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGACCAACACGGAAGCT	NA	False	NA	NA	False	NA	NA	NA	5323961	5345439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5324558_5324821_5325004_5325089_5325192_5329296_5329401_5329499_5329641_5329869_5329978_5333670_5333781_5333887_5336445_5336604_5336685_5336837_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338444_5341333_5341450_5343106_5343348_5344326_5344405_5345068_5345115_5345288
89731	chr11	+	2789	4	NNC	ENSMUSG00000018379.18	novel	5362	4	NA	NA	-36	443	intron_retention	TRUE	canonical	0	0	junction_1	662.544086583426	29	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACATTATAAATCTTTTC	6644	False	NA	NA	False	NA	NA	NA	87938592	87942759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_87938634_87939447_87939501_87939868_87940042_87940237
89732	chr7	-	5502	2	Intergenic	novelGene_3009	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTTGTCTAGTCCCTGA	NA	False	NA	NA	False	NA	NA	NA	102487104	102447844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_102449628_102483385
89733	chr15	+	1864	13	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	291.891092228287	16	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAACAAACAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	80832704	80853319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851950_80852850
89734	chr7	+	2999	5	Intergenic	novelGene_2942	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	78	junction_1	56.6629287982893	275	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGGGTAGTGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	42903177	42915293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42903292_42906867_42906982_42910109_42910237_42910431_42910493_42912710
89735	chr19	+	5162	2	Intergenic	novelGene_1220	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3428	junction_1	0	8	172	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGCTCTCGGGCCCACGG	1180	False	NA	NA	False	NA	NA	NA	22699838	22705214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763
89736	chr9	-	5377	4	FSM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	53	232	13	-232	multi-exon	FALSE	canonical	3	259	junction_3	109.352640571684	612	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGCCTCTGACTGTC	NA	False	NA	NA	False	NA	NA	NA	108141104	108082064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140978
89737	chr17	+	2296	7	FSM	ENSMUSG00000024160.17	ENSMUST00000024976.5	1947	7	-357	8	49	4	multi-exon	FALSE	canonical	2	4	junction_1	71.820957944043	32	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCCAAGCTGCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	25105781	25111115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_25106563_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
89738	chr7	+	4272	3	ISM	ENSMUSG00000037640.16	ENSMUST00000167955.2	2115	4	1397	-2240	1397	-1439	3prime_fragment	FALSE	canonical	3	155	junction_2	12	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TATTTAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	27437777	27451688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_27437855_27440381_27440481_27447592
89739	chr14	-	2539	3	Antisense	novelGene_ENSMUSG00000005148.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGGGGCCGTCGACTCGC	NA	False	NA	NA	False	NA	NA	NA	99552467	99539092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_99539690_99540852_99540912_99550584
89740	chrM	+	1460	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	924	-560	924	560	mono-exon	FALSE	NA	NA	NA	NA	NA	22	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAACTACAGAAACACCTAA	206	False	NA	23	True	NA	NA	NA	12665	14125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12700_14100
89741	chr11	-	1514	8	ISM	ENSMUSG00000020899.17	ENSMUST00000172987.2	2129	11	4577	2652	4577	-2652	internal_fragment	FALSE	canonical	3	425	junction_3	35.5114238589471	254	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTTAAAAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	68894700	68890432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521
89742	chr17	-	6205	19	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	-7	412	intron_retention	FALSE	canonical	3	24	junction_18	63.403956725074	558	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCCCCACACAGAAACAC	NA	False	NA	NA	False	NA	NA	NA	32503114	32414835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503036
89743	chr6	-	2542	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	140	junction_10	186.019177230523	25	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3038	False	NA	NA	False	NA	NA	NA	71885744	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
89745	chr7	+	713	2	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	6913	0	5057	0	3prime_fragment	FALSE	canonical	3	8866	junction_1	0	2	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46503467	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46503531_46504400
89746	chr5	+	2383	6	NIC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	-2	-47	intron_retention	FALSE	canonical	3	11744	junction_1	1461.49695860101	13	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTATTGGAAGAACTTAA	473	False	NA	NA	False	NA	NA	NA	129097263	129101340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099610_129099837
89747	chr15	-	752	5	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	838.146466913749	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGTGTGTATTTATGG	NA	False	NA	NA	False	NA	NA	NA	51728879	51649955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659876_51728739
89749	chr15	-	2009	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-77	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	26	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	681	False	NA	NA	False	NA	NA	NA	36793840	36771019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771492_36772291_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
89750	chr17	-	2385	15	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	1752	740	1723	99	3prime_fragment	FALSE	canonical	3	465	junction_13	59.7598937244636	88	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACTGTCATTTATAAAATT	NA	False	NA	NA	False	NA	NA	NA	79242743	79227174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003
89751	chr12	+	3439	8	ISM	ENSMUSG00000037466.14	ENSMUST00000196755.5	4000	9	-13	607	-3	-607	intron_retention	FALSE	canonical	3	15	junction_3	72.3201499005129	254	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTCAATGGCGGAACGC	NA	False	NA	NA	False	NA	NA	NA	113120046	113129061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121090_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
89752	chr4	+	9521	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	13	1658	multi-exon	FALSE	non_canonical	0	0	junction_3	65.7995459476248	49	108	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTTCCAGGTTCCAGG	NA	False	NA	NA	False	NA	NA	NA	147216507	147419849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216568_147216646_147216818_147219028_147219037_147244438_147247042_147247158_147247328_147247379_147249844_147409230_147409335_147413438_147413566_147415724_147419043_147419352
89753	chr13	-	4170	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	-27	intron_retention	FALSE	canonical	3	31	junction_3	1968.48571843146	2	116	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGGAAATACAGTAATCT	4760	False	NA	NA	False	NA	NA	NA	58550321	58538982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58547027_58547706_58547805_58548146_58548232_58550206
89754	chr8	+	5786	6	Fusion	ENSMUSG00000071796.14_ENSMUSG00000071793.13	novel	4009	6	NA	NA	-4	-2035	multi-exon	FALSE	non_canonical	0	0	junction_5	534.914423062232	2868	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCGTACACTCAAAGACAG	NA	False	NA	NA	False	NA	NA	NA	20016461	20170959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811_20045712_20170092
89755	SIRV5	+	4380	20	NNC	SIRV5A	novel	1984	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	4061.25416268931	1340	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1019	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7684_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133_11387_11462
89756	chr17	+	3135	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	706	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	756.432721543841	3	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	2212	False	NA	NA	False	NA	NA	NA	56612112	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619910_56620111_56620252_56622191_56622316_56622398_56622446_56622769_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
89757	chr15	-	4306	3	Fusion	ENSMUSG00000060036.15_ENSMUSG00000077734.3	novel	824	5	NA	NA	1	-303	intron_retention	FALSE	canonical	3	28682	junction_1	1696.5	5	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGACCAAACGTCGGGC	3572	False	NA	NA	False	NA	NA	NA	79967553	79962298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_-_79964754_79965096_79965985_79966590
89758	chr17	+	2854	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	26	-1049	18	-7	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	371	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCCAACTTGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66418665	66427491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
89759	chr5	-	1202	1	Antisense	novelGene_ENSMUSG00000096617.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	457	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAGAAGATGCGGCTGT	NA	False	NA	NA	False	NA	NA	NA	96010748	96009546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96009500_96010700
89760	chr4	+	5750	3	FSM	ENSMUSG00000085101.8	ENSMUST00000150529.2	545	3	-34	-5171	-13	5171	multi-exon	FALSE	canonical	3	82	junction_2	10.5	418	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCCATTCCAACTAATTTT	NA	False	NA	NA	False	NA	NA	NA	145136801	145181497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145136997_145138756_145138851_145176036
89761	chr1	-	830	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-149	-3	-149	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653881	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
89762	chrM	+	1562	2	Genic_Genomic	ENSMUSG00000064351.1_ENSMUSG00000064353.1	novel	1545	1	NA	NA	-3	-68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-2	True	NA	NA	False	NA	NA	NA	5324	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_5668_5724
89763	chr6	-	1572	4	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-4	0	intron_retention	FALSE	canonical	3	6089	junction_1	1492.21602546906	248	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	NA	False	NA	NA	NA	125142572	125138816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125139065_125139174_125140400_125142233_125142275_125142514
89764	chr13	-	2653	5	NIC	ENSMUSG00000060739.9	novel	2700	6	NA	NA	-1	1	intron_retention	FALSE	canonical	3	555	junction_1	184.196226888609	15	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGCATAACGGTTTAC	NA	False	NA	NA	False	NA	NA	NA	97274382	97267490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_97267737_97268350_97268544_97270046_97271953_97272028_97272217_97274262
89766	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
89767	chr7	-	1415	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	91	5	7	-3	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	452	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGTCTGTTGTTCATGT	NA	False	NA	NA	False	NA	NA	NA	126398335	126394410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
89768	chr9	-	2700	1	ISM	ENSMUSG00000039952.16	ENSMUST00000191899.6	5662	4	56393	232	56144	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGCCTCTGACTGTC	9770	False	NA	NA	False	NA	NA	NA	108084764	108082064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_108082100_108084800
89769	chr3	+	2014	7	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1280.69140397764	12	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGGCTTGACTTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	89986931	90008209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994870_89995758_89995784_89997103_89997167_89997316_89997387_90006834
89770	chr17	+	3726	5	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	14	-2015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1397.37924344109	17	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTGGTATGCTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	13226760	13237006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227251_13229446_13229524_13232319_13232500_13233912
89771	chr2	-	6201	4	Intergenic	novelGene_2721	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	58	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGATTCTGGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	146847102	146837653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_146839271_146841867_146842022_146842077_146844953_146845547
89772	chr2	+	5705	21	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-50728	-923	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	330.508986262098	215	41	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAACACTTAATAGGAAT	NA	False	NA	NA	False	NA	NA	NA	5799101	5875783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5799695_5800362_5800497_5803170_5803302_5809687_5809843_5812239_5812320_5815608_5815654_5826084_5826193_5827911_5828017_5838450_5838524_5846762_5846836_5849645_5850197_5852924_5853002_5858323_5858428_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
89773	chr1	-	1122	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCGGCGAAGGTGGCTG	9060	False	NA	NA	False	NA	NA	NA	86458419	86454526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
89774	chr9	+	3080	3	NNC	ENSMUSG00000041124.12	novel	2731	2	NA	NA	-1929	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	57	328	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTCCTGTCTGAAAG	5039	False	NA	NA	False	NA	NA	NA	4381605	4386866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_4381952_4383536_4384143_4384738
89775	chr3	+	4075	6	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	1	0	intron_retention	FALSE	canonical	3	3249	junction_3	145.53267674306	42	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986972	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89997167_89997316_89997387_90006834
89776	chr13	+	4778	16	NNC	ENSMUSG00000005397.9	novel	6091	20	NA	NA	71	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	205.872279716225	5	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTTATTTTGATGTGTT	NA	False	NA	NA	False	NA	NA	NA	13612322	13686846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_13612512_13638306_13638607_13639894_13640122_13656740_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
89777	chr14	+	4448	5	NNC	ENSMUSG00000021890.7	novel	4918	6	NA	NA	-16928	-5422	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1074	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATGCCGGAAGTGCAGCG	NA	False	NA	NA	False	NA	NA	NA	31199427	31217010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_31201768_31204747_31204888_31209525_31209699_31214278_31215922_31216858
89778	chr4	-	2231	3	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGCAGCGGAGAAACAAAG	NA	False	NA	NA	False	NA	NA	NA	145178228	145159028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159149_145176033_145176254_145176337
89779	chr9	-	3512	10	NNC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	-6	-92	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	158.284553889506	7	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAATGTTTTATAAC	NA	False	NA	NA	False	NA	NA	NA	75466945	75405080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439776_75439875_75466781
89780	chr17	+	3357	2	Intergenic	novelGene_239	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_1	0	275	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	40489659	40494845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40489888_40491716
89781	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	584	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
89782	chr19	-	4660	7	Antisense	novelGene_ENSMUSG00000093315.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTCTGGGTCACCAT	NA	False	NA	NA	False	NA	NA	NA	44295096	44281923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44281985_44282761_44282849_44283340_44283624_44286476_44286604_44288041_44288252_44289648_44289883_44291438
89783	chr17	+	1084	2	Intergenic	novelGene_82	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095194	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
89784	chr9	+	5353	21	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	-1580	-3	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	74.3763907432997	13	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAACATAAGTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	56981041	57035645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56981555_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
89785	chr2	+	2753	18	NIC	ENSMUSG00000027642.16	novel	1944	17	NA	NA	-19	2	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	860.047121908512	6	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCTTCTGTGATAAAAT	NA	False	NA	NA	False	NA	NA	NA	157121469	157168241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_157121694_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157165142_157165191_157167630
89787	chr7	-	3969	15	NNC	ENSMUSG00000040725.14	novel	3784	15	NA	NA	-183	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	284.634710405015	720	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAGGGTTGAAACCCT	9901	False	NA	NA	False	NA	NA	NA	25454365	25420589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432794_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453765
89788	chr7	-	935	1	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	356	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCATTTGATGTTAGTGG	NA	False	NA	NA	False	NA	NA	NA	51397637	51396702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51396700_51397600
89789	chr17	+	2049	1	Intergenic	novelGene_182	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGGAGGAGCTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	40153887	40155936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
89790	chr4	-	4530	29	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	-208	-5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_28	190.436243951103	891	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCATTCTTGGTCTCCGT	1	True	NA	NA	False	NA	NA	NA	41275352	41194320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275089
89791	chr4	+	4377	8	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078498.6_ENSMUSG00000067916.10	novel	454	2	NA	NA	-69	1658	multi-exon	FALSE	non_canonical	0	0	junction_2	64.8127601445195	5	65	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTTCCAGGTTCCAGG	NA	False	NA	NA	False	NA	NA	NA	147209643	147419849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147219028_147219122_147249797_147249844_147398491_147398543_147409230_147409335_147413438_147413566_147415724_147419043_147419352
89792	chr9	+	5449	22	NNC	ENSMUSG00000042557.15	novel	4899	21	NA	NA	-1587	-22	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	84.1134909814078	53	40	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTGATTCTTAAGGAAAT	NA	False	NA	NA	False	NA	NA	NA	56981034	57035626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56981555_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
89793	chr9	+	939	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	98	901	-2	-91	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	119956852	119960534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
89795	chrUn_MU069435v1	+	566	1	Intergenic	novelGene_4739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTCGACACAAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	0	566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
89796	chrM	+	378	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	495	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-10	True	NA	23	True	NA	NA	NA	14639	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14649_14919
89797	chr2	-	666	2	Intergenic	novelGene_2726	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	623	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTACATCTGGGTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	150138265	150127845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_150128331_150138084
89798	chr1	+	8938	45	NNC	ENSMUSG00000026083.13	novel	7797	24	NA	NA	11	52889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	317.505446689795	786	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTATGGAAAGAGAAAAAAA	1419	False	NA	NA	False	NA	NA	NA	38037220	38147549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686_38092278_38092694_38092800_38092920_38093075_38093160_38093377_38093825_38093945_38094369_38094608_38095346_38095548_38095797_38095962_38096752_38096860_38098204_38098376_38102195_38102416_38106579_38106703_38110423_38110579_38113395_38113525_38118370_38118480_38122784_38122904_38124627_38124733_38127050_38127756_38131143_38131297_38137933_38138105_38146650_38146775_38147483
89799	chr4	-	6903	4	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1026	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTCTCCTGGTTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	147422224	147390060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147390230_147409227_147409333_147413436_147413565_147415723
89801	chr7	-	1269	10	NNC	ENSMUSG00000109324.3	novel	2147	10	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1463.24024001529	7	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCACTTCTCGCCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	44635751	44626183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44626408_44626927_44627050_44627550_44627756_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632905_44633012_44635706
89802	chr10	+	2228	2	Antisense	novelGene_ENSMUSG00000020063.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAATATTCTTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	63155520	63158532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_63156741_63157524
89803	chr11	-	3922	6	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATAGCTGCCGACTGCAGG	NA	False	NA	NA	False	NA	NA	NA	57952860	57943447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57943557_57946291_57946436_57947877_57947989_57948085_57948213_57949382_57949728_57949774
89804	chr15	+	2380	8	FSM	ENSMUSG00000009585.19	ENSMUST00000176325.8	2765	8	5	380	-1	-30	multi-exon	FALSE	canonical	3	242	junction_5	149.473770820386	186	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTTTTCTAATAAAGTGG	8297	False	NA	NA	False	NA	NA	NA	79776654	79792257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051
89805	chr9	+	454	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	73	482	3	-260	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	17	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCAAAGCTGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	120400582	120403238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
89806	chr4	+	2965	6	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	2762	6	NA	NA	-22	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3769982743398	203	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	2347	False	NA	NA	False	NA	NA	NA	147445737	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147445910_147637752_147637884_147661528_147661587_147665698_147665826_147666658_147666774_147667290
89808	chr17	+	6859	31	NNC	ENSMUSG00000090936.3	novel	1555	2	NA	NA	-16029	-1948	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	0.3590109871423	503	31	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACGCAGGGAAGGGATGC	9086	False	NA	NA	False	NA	NA	NA	35368065	35384214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35368388_35368495_35368576_35368674_35368771_35368884_35369098_35369203_35369305_35369475_35369684_35369786_35369882_35371593_35371761_35372026_35372102_35372202_35372341_35372481_35372717_35372897_35372988_35373086_35373213_35373440_35373576_35373770_35374037_35374341_35376183_35376322_35376540_35376857_35377155_35377367_35377560_35377911_35378389_35378754_35378969_35379073_35379169_35379430_35379571_35379728_35379809_35380003_35380158_35380310_35380451_35380614_35380688_35380781_35380886_35381177_35381356_35381877_35382025_35384051
89809	chr16	+	4871	20	NNC	ENSMUSG00000005899.15	novel	4623	20	NA	NA	-958	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.6676359466567	429	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACTAAGCCATCTCCCT	NA	False	NA	NA	False	NA	NA	NA	17436259	17462685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_17436509_17437124_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
89810	chrUn_MU069435v1	+	575	1	Intergenic	novelGene_4743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	117	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGGTTTGTCTCTGCGG	NA	False	NA	NA	False	NA	NA	NA	0	575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
89811	chr1	-	4542	4	ISM	ENSMUSG00000037474.14	ENSMUST00000195650.6	4230	16	25544	92	25534	-83	3prime_fragment	FALSE	canonical	3	469	junction_1	31.8991466273873	7	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGACCCGTAGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	191282089	191269559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407
89813	chr4	-	4667	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	41	0	41	0	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	408	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAGCCTTTCCTCAT	7745	False	NA	NA	False	NA	NA	NA	135749033	135730678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
89814	chr19	-	1506	10	Antisense	novelGene_ENSMUSG00000071644.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGCCATGGTGATTCCGC	NA	False	NA	NA	False	NA	NA	NA	8955541	8944586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8944714_8945579_8945737_8946523_8946589_8946726_8946866_8947202_8947349_8949867_8950000_8950266_8950478_8954684_8954852_8954945_8955073_8955306
89815	chr15	-	1602	5	NNC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-17	903	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	312.820535611075	1	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGTGGCCACACTGAATAA	NA	False	NA	NA	False	NA	NA	NA	97065142	97057910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97057956_97058056_97059277_97059835_97059964_97064383_97064508_97065057
89816	chr7	-	8312	5	Antisense	novelGene_ENSMUSG00000081962.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	70	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGCAAGATTTTACTGAAA	NA	False	NA	NA	False	NA	NA	NA	33746142	33649365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_33652416_33672151_33672904_33673000_33673819_33683719_33684189_33742919
89817	chr13	-	2235	4	NIC	ENSMUSG00000074865.12	novel	2147	4	NA	NA	23	-3	intron_retention	FALSE	canonical	3	40	junction_1	29.0095769627128	11	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAAGCTTGTGTGTGGACC	NA	False	NA	NA	False	NA	NA	NA	62718990	62664613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_62666545_62667985_62668047_62668231_62668359_62718874
89818	chr4	+	2489	7	NNC	ENSMUSG00000057572.16	novel	3833	7	NA	NA	-39	-1245	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	292.052934699631	3736	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAATTTCATTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	129229448	129242419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129229933_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596_129240840_129240952
89819	chr15	+	2108	9	NNC	ENSMUSG00000009585.19	novel	2765	8	NA	NA	0	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	235.995233002703	740	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTCTAATAAAGTGGAC	8292	False	NA	NA	False	NA	NA	NA	79776649	79792259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791443
89822	chr2	+	4171	7	FSM	ENSMUSG00000037523.14	ENSMUST00000041362.12	2867	7	-1304	0	-1300	0	multi-exon	FALSE	canonical	3	174	junction_4	7.24377127070024	34	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	5960	False	NA	NA	False	NA	NA	NA	131074682	131089945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
89823	chr2	-	4530	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	-41	-2913	-23	2913	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	407	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTTTTTTTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	177482152	177470670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
89824	chr9	+	1921	1	Antisense	novelGene_ENSMUSG00000039952.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCAGCCATGAAGGCCGA	4018	False	NA	NA	False	NA	NA	NA	108084490	108086411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108084500_108086400
89825	chr4	+	10114	21	NNC	ENSMUSG00000028580.16	novel	4017	22	NA	NA	2	-2	intron_retention	FALSE	non_canonical	0	0	junction_16	154.36479520927	16	95	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTACTGCTCTCAC	NA	False	NA	NA	False	NA	NA	NA	130390698	130508871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130495524_130495597_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
89826	chr1	+	5588	2	FSM	ENSMUSG00000046062.6	ENSMUST00000052529.4	5594	2	6	0	6	0	multi-exon	FALSE	canonical	3	372	junction_1	0	570	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTGACTTTATGTAT	5573	False	NA	NA	False	NA	NA	NA	133058886	133067521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_133061354_133064400
89827	chr19	+	4871	21	FSM	ENSMUSG00000117924.2_ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	12	-2557	12	1004	multi-exon	FALSE	canonical	3	621	junction_4	71.7857924661976	23	57	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTGTCATCAGTAGGGCA	8581	False	NA	NA	False	NA	NA	NA	8734448	8750843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
89828	chr15	-	3819	5	FSM	ENSMUSG00000033228.9	ENSMUST00000228072.2	4519	5	-1280	1980	-1280	-23	multi-exon	FALSE	canonical	0	0	junction_2	104.145331148352	2418	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTCCCTAATGGTTACA	NA	False	NA	NA	False	NA	NA	NA	96317853	96311559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952
89829	chr10	-	2001	17	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	793.972820595107	11	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899687	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116895977_116896056_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
89830	chr19	+	5259	14	FSM	ENSMUSG00000055491.15	ENSMUST00000062322.11	5205	14	-67	13	-22	-13	multi-exon	TRUE	canonical	3	90	junction_2	120.971168749579	627	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTAGAGGGAACTTCC	NA	False	NA	NA	False	NA	NA	NA	46044955	46061335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46045183_46049841_46050016_46050579_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056456_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
89831	chr11	-	3378	4	Antisense	novelGene_ENSMUSG00000035530.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGGCGGCGCCTGTATT	NA	False	NA	NA	False	NA	NA	NA	100215039	100210811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_100210985_100211489_100211654_100211771_100214304_100214530
89832	chr17	-	6958	17	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	580	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAAGATGGTAACCCGG	NA	False	NA	NA	False	NA	NA	NA	36170562	36152611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36152771_36155321_36155461_36156728_36157111_36157192_36157268_36158212_36159557_36159682_36159748_36159896_36159990_36161184_36161895_36162001_36162048_36163305_36164779_36164910_36165003_36165092_36165219_36165312_36165490_36165745_36165872_36165989_36166101_36168352_36169464_36169833
89833	chr11	+	3883	3	NNC	ENSMUSG00000035530.14	novel	924	2	NA	NA	101	2117	intron_retention	FALSE	non_canonical	0	0	junction_2	6110.5	9	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCCAAAACCCCAGAAAATA	4058	False	NA	NA	False	NA	NA	NA	100210811	100215039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100211656_100211773_100214304_100214530
89834	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
89835	chrM	+	688	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	690	0	690	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	252	False	NA	NA	False	NA	NA	NA	10856	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10900_11500
89836	chr10	+	1907	5	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-1078	608	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	53.5023363975817	146	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGACTATTAGAAACTC	NA	False	NA	NA	False	NA	NA	NA	95728226	95733727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95728602_95729113_95729296_95729415_95729523_95730062_95730152_95732573
89837	chr7	+	835	7	Antisense	novelGene_ENSMUSG00000065822.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCGCGGGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	99128091	99132858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99128156_99128474_99128676_99129080_99129270_99130902_99130999_99131467_99131564_99131778_99131908_99132798
89838	chr15	-	2519	5	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	57	18732	57	2364	5prime_fragment	FALSE	canonical	3	46	junction_2	5.71729831301464	17	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAGAAAAGAAACT	7165	False	NA	NA	False	NA	NA	NA	37961290	37942927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
89839	chr4	+	2934	5	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	184.711937892492	18	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATTGGTTTACTTAATG	NA	False	NA	NA	False	NA	NA	NA	98615029	98626712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98624938_98625093
89840	chr5	+	4239	17	ISM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	40514	-4	4856	4	3prime_fragment	FALSE	canonical	3	795	junction_5	139.684451868309	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTGTTTGTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	75776089	75817386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
89841	chr1	-	1613	10	NNC	ENSMUSG00000026000.17	novel	1385	10	NA	NA	50	-7	intron_retention	FALSE	canonical	0	0	junction_9	198.554218735785	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAAGTGGTCGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	67077943	67042540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67074579_67074685_67077653
89842	chr11	-	1761	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	37	2	37	-2	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	1	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATGGGCTTGTGTGTCA	1884	False	NA	NA	False	NA	NA	NA	59119059	59102241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
89843	chr10	-	3464	9	FSM	ENSMUSG00000020063.17	ENSMUST00000020257.13	3905	9	434	7	434	-7	multi-exon	FALSE	canonical	3	191	junction_8	29.4870204496826	383	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGTTAACTTCCATTGTT	NA	False	NA	NA	False	NA	NA	NA	63174377	63154792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414_63171657_63172758_63172876_63174343
89844	chr4	+	4792	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-107	-1000	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	533.493960186576	513	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTACTTGTGGAAACTAAT	4579	False	NA	NA	False	NA	NA	NA	135583315	135594693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135591039
89845	chr2	+	2137	6	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	20947	0	481	0	3prime_fragment	FALSE	canonical	3	2909	junction_4	138.693907580686	75	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162917553	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
89846	chr5	+	7553	8	Intergenic	novelGene_798	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	249	163	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTCCATACATGTGT	NA	False	NA	NA	False	NA	NA	NA	109309564	109826757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_109312428_109464828_109466489_109659581_109659972_109679574_109679849_109823531_109823728_109824064_109824902_109825237_109826436_109826622
89847	chr10	+	1426	13	NNC	ENSMUSG00000025395.15	novel	1583	13	NA	NA	12	4	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_1	195.741042082532	9	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAGAAGTTTGTAAAATG	1020	False	NA	NA	False	NA	NA	NA	127851076	127865856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127851221_127851903_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
89848	chr18	+	1641	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	107	-1	-107	mono-exon	FALSE	NA	NA	NA	NA	NA	29	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGGAACTCCAGTGTAATC	NA	False	NA	NA	False	NA	NA	NA	48179712	48181353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181400
89849	chr9	+	3450	17	Antisense	novelGene_ENSMUSG00000032396.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	121	12	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCAGGCGGCAGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	64214092	64248460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_64214625_64214705_64214885_64215559_64215710_64217449_64217627_64217719_64217877_64218725_64219260_64221213_64221308_64221833_64222083_64224969_64225131_64226360_64226533_64229681_64229866_64231905_64231982_64232988_64233167_64236714_64236850_64238067_64238196_64246756_64246915_64248274
89850	chr1	+	1740	2	ISM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-5	30	-5	-30	intron_retention	FALSE	canonical	3	20695	junction_1	0	115	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAGTTGTTCTAACAATG	NA	False	NA	NA	False	NA	NA	NA	86454442	86458404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_86454673_86456894
89851	chr4	+	5580	7	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-13	42994	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	87.0780301415537	1239	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	146206928	146257998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207263_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158
89852	chr16	+	2244	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	380	junction_10	669.929406728799	489	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
89853	chr1	-	4960	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	-1	-845	intron_retention	FALSE	canonical	2	3	junction_17	132.104656005791	102	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAACTCCTTGCCTAGTA	NA	False	NA	NA	False	NA	NA	NA	133589107	133548444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133583137_133588313_133588360_133588974
89854	chr10	-	1806	15	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	4	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	639.020188272959	6	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTGATCTGTATAT	NA	False	NA	NA	False	NA	NA	NA	116899715	116886901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893198_116894042_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
89855	chr4	+	3756	6	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066007.16	novel	4244	5	NA	NA	-14	104716	multi-exon	TRUE	non_canonical	0	0	junction_1	100.053985427868	13	46	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	146093379	146319720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093548_146209452_146209546_146214922_146215005_146250678_146250737_146251579_146251790_146316575
89856	chr5	-	4921	2	Antisense	novelGene_ENSMUSG00000060961.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	94	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	89356949	89351752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_89352991_89353266
89857	chr4	+	5344	22	FSM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	45	0	0	0	multi-exon	FALSE	canonical	3	218	junction_8	122.217214904643	779	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390676	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
89858	chr4	-	3395	4	NNC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-144	-6	at_least_one_novel_splicesite	FALSE	canonical	2	24	junction_3	117.400548929249	8	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGCGATGTGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	58554042	58435260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553929
89859	chr11	+	2690	6	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	821.738011777476	24	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	NA	NA	NA	20151433	20176856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151567_20165678_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
89860	chr17	-	6262	21	NIC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	-3	412	combination_of_known_junctions	FALSE	canonical	3	16	junction_20	71.4790004127086	560	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTCCCCACACAGAAACAC	NA	False	NA	NA	False	NA	NA	NA	32503110	32414835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418033_32418131_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014_32472175_32503036
89862	chrM	+	2257	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1297	-3	-1297	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3758	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	26	False	NA	-6	True	NA	NA	NA	1453	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3700
89863	chr11	+	4319	26	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	-6	-579	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.823200808329	90	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTCACTGACTTAAAATTA	NA	False	NA	NA	False	NA	NA	NA	23206048	23247018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206643_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
89864	chr4	+	4134	12	NIC	ENSMUSG00000028811.13	novel	2909	13	NA	NA	46	1494	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	474.473575190146	3	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGACATGAAACAAAATAAA	901	False	NA	NA	False	NA	NA	NA	129083740	129114894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
89865	chrM	+	973	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	725	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14756_14926
89866	chr11	-	2529	2	ISM	ENSMUSG00000020493.9	ENSMUST00000051395.9	3824	10	11659	271	11659	-271	3prime_fragment	FALSE	canonical	3	77	junction_1	0	4506	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTATAAAGCTGCTATTG	5935	False	NA	NA	False	NA	NA	NA	86987875	86980249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_86982692_86987788
89867	chr11	+	2642	1	NIC	ENSMUSG00000018379.18	novel	5362	4	NA	NA	260	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	33	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGCATGGTTGTCCTTTT	7726	False	NA	NA	False	NA	NA	NA	87939674	87942316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_87939700_87942300
89868	chr2	+	4581	6	NNC	ENSMUSG00000094932.8	novel	1497	4	NA	NA	-3659	2786	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	100.95147349098	749	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	175529670	175545998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_175529815_175533277_175533333_175534637_175534740_175540356_175540484_175540688_175540750_175541906
89869	chr17	-	3430	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	0	1410	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	884.781871423686	19	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCACAAAGCCAATGTGTTA	4817	False	NA	NA	False	NA	NA	NA	25179619	25160033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25160909_25160980_25163117_25164553_25164603_25167611_25167755_25174991_25175141_25179541
89870	chr14	+	1133	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-99	-698	-99	698	mono-exon	FALSE	NA	NA	NA	NA	NA	5	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGATATTTTACAGT	NA	False	NA	NA	False	NA	NA	NA	13669338	13670471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
89871	chr11	-	2052	15	NIC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_13	141.27466373078	6	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	NA	False	NA	NA	NA	84020434	83969745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84017813_84017922_84020362
89872	chr17	+	2491	4	FSM	ENSMUSG00000116802.2	ENSMUST00000231355.2	2194	4	-20	-277	-20	277	multi-exon	FALSE	canonical	3	89	junction_3	12.3917535302941	305	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCCCAAGTATGCTGCTC	6204	False	NA	NA	False	NA	NA	NA	17455113	17486602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473
89873	chr4	+	5280	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-5194	1658	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.5403625519528	2	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTTCCAGGTTCCAGG	NA	False	NA	NA	False	NA	NA	NA	147411669	147419849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147412192_147412418_147413152_147413355_147413566_147415724_147419043_147419352
89874	chr11	+	923	4	ISM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	434	5	1	0	intron_retention	FALSE	canonical	3	37102	junction_2	603.695287376007	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTGTCCTTGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	6365876	6369812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112
89875	chr17	-	2405	10	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	29	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	291.098685061346	57	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050154	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007232_7010150_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
89876	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	5	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
89877	chr1	-	842	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	-3	-161	3	mono-exon	FALSE	NA	NA	NA	NA	NA	8	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
89878	chr13	-	5932	6	NNC	ENSMUSG00000113047.2	novel	704	5	NA	NA	14	50052	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	25.7106981624381	182	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAAATGAAGCTGATGGC	NA	False	NA	NA	False	NA	NA	NA	74712361	74651976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74652418_74697417_74702530_74703925_74703987_74704201_74704329_74711857_74711944_74712256
89879	chr6	-	2438	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2980.71974501916	32	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTATCCAAATTACTTGGT	NA	False	NA	NA	False	NA	NA	NA	51446825	51438111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51439036_51439318_51440235_51440390_51440465_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
89880	chr17	-	4749	13	NNC	ENSMUSG00000024045.7	novel	3731	14	NA	NA	-759	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	166.781356372148	15	98	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGAAGACATTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	32538537	32522654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32524681_32525463_32525560_32528392_32528898_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744
89881	chr4	+	3194	19	Antisense	novelGene_ENSMUSG00000019055.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	318	14	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGGGCGCTGCCACGCAC	8193	False	NA	NA	False	NA	NA	NA	147994239	148021201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147995331_147997675_147997802_148000252_148000400_148001760_148001867_148002590_148002659_148003238_148003350_148004624_148004768_148005463_148005589_148005853_148005962_148007580_148007708_148009977_148010105_148010602_148010708_148011481_148011578_148012914_148012978_148013995_148014109_148015577_148015745_148016085_148016221_148017187_148017282_148021059
89882	chr4	+	4095	2	Intergenic	novelGene_2102	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1572	172	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGCATGCCTATATGAGA	9123	False	NA	NA	False	NA	NA	NA	146440222	146609566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146442130_146607378
89883	chr3	+	3090	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	174	1054	-7	0	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	33	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTTGCAGCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	102927915	102964448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
89884	SIRV5	+	2429	2	NNC	SIRV5A	novel	885	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	20	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	11132	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_11544_11588
89885	chr5	-	1881	6	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	32	-529	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3231.3420988809	21	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTAGTTAAATGACT	6855	False	NA	NA	False	NA	NA	NA	148989759	148984040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985195_148985531_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
89886	chr4	+	2927	5	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	20	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	184.711937892492	3	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATTGGTTTACTTAATG	NA	False	NA	NA	False	NA	NA	NA	98615004	98626712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98624876_98625063
89888	chr13	+	9257	24	NIC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	1	-301	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	35.0361951650663	100	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGTCTGTGGAATTGA	NA	False	NA	NA	False	NA	NA	NA	55359632	55463267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
89889	chr14	+	2834	4	ISM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	15958	1179	2902	-1179	3prime_fragment	FALSE	canonical	3	7314	junction_1	153.176006244088	23	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAGTGGAACTTGGGGTC	5253	False	NA	NA	False	NA	NA	NA	63375868	63382193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_63375944_63376447_63376565_63379182_63379312_63379680
89890	chr17	+	2955	7	Fusion	ENSMUSG00000095990.2_ENSMUSG00000096696.2	novel	2667	4	NA	NA	-58962	-1955	multi-exon	TRUE	canonical	0	0	junction_1	100.718529686559	1	67	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTATAAATGTAACCAGTG	NA	False	NA	NA	False	NA	NA	NA	17225412	17365138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_17225539_17225803_17225973_17281029_17281160_17305782_17305910_17306151_17306213_17307505_17309597_17364887
89891	chr2	+	1126	10	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7473	-781	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCGCTTCCGGGTCAGCCA	8638	False	NA	NA	False	NA	NA	NA	104830007	104847415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104830183_104830579_104830648_104835269_104835352_104836125_104836230_104837103_104837185_104843195_104843286_104843537_104843666_104844088_104844229_104845114_104845247_104847289
89892	chr2	-	2185	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-22	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4169.46393510879	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3714	False	NA	NA	False	NA	NA	NA	154734773	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154713872_154714140_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
89893	chrM	-	2094	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTAGGCCTACAATGGT	9986	False	NA	-1	True	NA	NA	NA	3710	1616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1600_3700
89894	chr16	-	1030	3	NIC	ENSMUSG00000022760.18	novel	734	4	NA	NA	33	-2	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	46	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGCTGTTTGGCTTGGCT	7317	False	NA	NA	False	NA	NA	NA	17348869	17345943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_17346605_17346798_17346940_17348641
89895	chr7	+	3609	22	Antisense	novelGene_ENSMUSG00000032637.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	550	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCGAAGTCCGCTGCCGG	NA	False	NA	NA	False	NA	NA	NA	126090884	126102151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126091870_126092393_126092546_126092720_126092847_126092932_126093063_126093310_126093504_126093593_126093664_126093747_126093898_126094372_126094444_126094532_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096539_126096666_126096840_126097275_126097477_126098320_126098414_126099300_126099428_126099896_126100046_126100274_126100346_126100426_126100482_126100590_126100630_126102070
89896	chr11	-	3546	15	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	0	1792	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	223.647955866503	182	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGCAAAAGAGAAGCTGAT	NA	False	NA	NA	False	NA	NA	NA	95873437	95852469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95871874_95871957_95873327
89898	chr4	+	2695	11	NNC	ENSMUSG00000028550.16	novel	2792	11	NA	NA	-14	-51	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	21.4671842587704	1	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTACCAAGCCAGGATTATA	NA	False	NA	NA	False	NA	NA	NA	99082369	99147969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_99082521_99100813_99100949_99104114_99104199_99106261_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
89899	chr1	-	3900	33	Genic_Genomic	ENSMUSG00000103380.2	novel	942	2	NA	NA	-29342	7020	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTCAGGTTAGCGGGTCCC	NA	False	NA	NA	False	NA	NA	NA	171949588	171910456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_171910515_171915116_171915232_171916662_171916736_171918503_171918587_171918730_171918805_171919808_171919921_171925239_171925349_171927232_171927334_171928944_171929081_171929775_171929858_171931673_171931825_171932750_171932820_171933683_171933759_171935877_171935962_171937352_171937493_171938054_171938140_171938241_171938379_171939427_171939599_171939694_171939836_171940590_171940782_171940899_171940997_171942311_171942401_171942589_171942713_171944491_171944581_171944751_171944809_171945588_171945660_171945816_171945888_171946406_171946544_171946752_171946939_171947022_171947133_171947440_171947604_171948794_171948991_171949264
89900	chrX	-	3886	21	NNC	ENSMUSG00000025269.17	novel	4742	7	NA	NA	-54010	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	36.9521311969959	198	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACCATGTTGAGTGGATA	NA	False	NA	NA	False	NA	NA	NA	149426874	149354504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918_149371338_149371939_149372037_149372944_149373078_149391578_149391706_149393999_149394096_149395908_149395975_149396871_149396946_149403762_149403820_149405075_149405197_149408149_149408358_149411729_149411882_149417517_149417622_149422574_149422704_149424907_149424973_149426163_149426225_149426553
89901	chr12	+	4394	22	NIC	ENSMUSG00000021111.16	novel	4380	22	NA	NA	-1	-8	intron_retention	FALSE	canonical	3	14	junction_1	447.931451266836	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAGCACAAATCCCATA	NA	False	NA	NA	False	NA	NA	NA	105750961	105805190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_105751073_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
89902	chr6	-	2589	13	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGCTGTTGTTGCATGA	NA	False	NA	NA	False	NA	NA	NA	37943221	37908336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37908433_37920343_37920465_37922454_37922621_37926154_37926331_37928381_37928561_37930428_37930562_37933334_37933409_37933936_37934108_37934443_37934771_37935494_37935629_37937714_37937791_37941637_37941786_37942433
89903	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
89904	chr4	-	3074	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	31	-501	17	-4	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	117	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAATGAGACTGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	108975202	108918345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
89905	chr9	+	2147	8	NIC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	-4	-1	intron_retention	FALSE	canonical	3	166	junction_4	16.1042521954765	247	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGTCTCTAGCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	108174104	108179500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
89906	chrUn_MU069435v1	-	589	1	Intergenic	novelGene_4765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	56	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	589	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_600
89907	chr4	+	2487	11	NNC	ENSMUSG00000028426.11	novel	3810	10	NA	NA	202	-1035	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	390.427009823859	775	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAATCACAGTGTTGGCTT	231	False	NA	NA	False	NA	NA	NA	55350291	55391202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385480_55385518_55385602_55389883
89908	chr2	+	4896	15	NNC	ENSMUSG00000058793.15	novel	627	5	NA	NA	-4606	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	168.498773688991	512	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGATTGTGCGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	132122489	132153966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_132122563_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816_132149564_132152647
89909	chr4	+	3553	8	NNC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	24	1820	intron_retention	FALSE	non_canonical	0	0	junction_7	69.1685312427965	5115	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGAAC	NA	False	NA	NA	False	NA	NA	NA	149569720	149582945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536_149581612_149581725
89910	chr16	+	1942	11	NIC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	39	8	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	830.562875404385	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTTATATAGGTGGTC	6113	False	NA	NA	False	NA	NA	NA	22926567	22932688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926721_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
89911	chr5	-	2298	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	219	4	144	-2	multi-exon	FALSE	canonical	3	188	junction_1	171.680966232913	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACACTGGCTTCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	125417939	125354154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
89912	chr19	-	4361	8	NNC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	-2672	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	280.276612638009	8	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	9780	False	NA	NA	False	NA	NA	NA	44398990	44382893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44383079_44383602_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824_44396018_44398806
89913	chr10	-	1906	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	610.171851930986	5	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAATGTCTTACTGATCT	NA	False	NA	NA	False	NA	NA	NA	116899685	116886907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887157_116888912_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
89914	chr16	+	1152	4	Antisense	novelGene_ENSMUSG00000040681.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACACGAACTGCTGCGA	1450	False	NA	NA	False	NA	NA	NA	95922787	95928883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95923618_95925922_95926045_95928351_95928409_95928740
89916	chr8	-	1452	8	ISM	ENSMUSG00000031781.15	ENSMUST00000034233.15	1807	9	5614	-6	8	6	3prime_fragment	FALSE	canonical	3	1537	junction_1	133.441265838463	25	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTGAGTGTGTCTTTG	NA	False	NA	NA	False	NA	NA	NA	95559279	95549182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142
89917	chr4	-	2470	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	-181	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	619.263051758077	2	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGAGCTGAGTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	137497312	137469046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483055_137485882_137486044_137497212
89918	chrM	+	1445	3	Genic_Genomic	ENSMUSG00000064356.1_ENSMUSG00000064359.1_ENSMUSG00000064358.1	novel	784	1	NA	NA	0	1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-11	True	NA	NA	False	NA	NA	NA	7765	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8369_8480_9187_9255
89919	chr4	+	5048	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	-22	-3209	-22	3209	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	40	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACATGGTGTCTGATTGCA	NA	False	NA	NA	False	NA	NA	NA	149569728	149584334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
89920	chr1	-	2298	5	FSM	ENSMUSG00000039395.9	ENSMUST00000048860.9	2284	5	181	-195	181	195	multi-exon	FALSE	canonical	3	578	junction_1	58.0215477215146	631	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGCCTTTAAGTTGAG	4403	False	NA	NA	False	NA	NA	NA	72251285	72198405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_72200179_72201480_72201645_72203230_72203322_72231201_72231362_72251175
89921	chr10	-	1823	7	FSM	ENSMUSG00000034792.9	ENSMUST00000043709.8	1962	7	120	19	120	-19	multi-exon	FALSE	canonical	0	0	junction_4	27.6083723211315	16	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATGTAATTTAAAAACAAAC	5899	False	NA	NA	False	NA	NA	NA	81359939	81338165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_81338940_81343761_81343916_81345119_81345250_81347830_81347960_81348244_81348400_81350070_81350256_81359643
89922	chr9	+	975	7	NNC	ENSMUSG00000032518.7	novel	1101	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1904.74457313543	41	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956854	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959943_119960098_119960232_119960465
89923	chr2	-	4416	6	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-71393	3161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	123.980643650531	1125	31	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCCAACTTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	176969607	176881988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176937155_176937189_176969550
89924	chr1	-	1626	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-841	-2	-841	2	mono-exon	FALSE	NA	NA	NA	NA	NA	7	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
89925	chr16	+	4245	7	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	-2	0	intron_retention	FALSE	canonical	3	380	junction_6	689.776956704122	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6060	False	NA	NA	False	NA	NA	NA	22926514	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22928904_22928983_22929094_22929329_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
89926	chr4	-	1136	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	406.055741624377	121	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATGGATTCATCACCT	NA	False	NA	NA	False	NA	NA	NA	148711222	148701175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148701302_148702022_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
89927	chr15	-	3597	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	260	-569	253	569	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	1337	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCCAGCAGTGGTGTGTG	-1	True	NA	NA	False	NA	NA	NA	36794522	36770444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
89928	chrM	+	1557	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	15	10	15	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	37	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGGTTATTAGGGTGG	12	False	NA	37	True	NA	NA	NA	1108	2665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2700
89929	chr8	+	2612	18	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-11	-14	combination_of_known_junctions	FALSE	canonical	1	5	junction_15	89.4565290419615	2417	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAGCAAACTCTAACACC	4573	False	NA	NA	False	NA	NA	NA	3681140	3693630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691734_3691821_3691897_3692056_3692645
89930	chr2	-	4714	17	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	-62	891	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	457.53522746888	3	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTCTCTATATGTAT	NA	False	NA	NA	False	NA	NA	NA	103627380	103594471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597158_103599209_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
89931	chr19	+	3009	15	NNC	ENSMUSG00000040385.8	novel	1473	7	NA	NA	-18	6225	intron_retention	FALSE	non_canonical	0	0	junction_5	1789.50187031966	72	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGGCCTCCGCTTCCTT	3353	False	NA	NA	False	NA	NA	NA	4242139	4251644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244609_4245103_4246082_4246179_4246384_4247113_4247254_4247340_4247402_4247474_4247782_4250271_4250370_4250462_4250578_4250926_4251057_4251327_4251399_4251481
89932	chr15	+	2754	8	NIC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	59	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	284.379238026281	38	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-35	True	NA	NA	NA	101982357	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_102003687
89933	chr5	+	1263	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-189	-72	189	mono-exon	FALSE	NA	NA	NA	NA	NA	224	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	96009500	96010763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
89934	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
89935	chr15	+	3315	11	Antisense	novelGene_ENSMUSG00000049414.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	138	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGGTAACACATTCAAGT	NA	False	NA	NA	False	NA	NA	NA	83260336	83317251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_83261935_83263202_83263397_83263884_83264008_83265962_83266084_83269186_83269313_83270866_83271039_83272715_83272870_83274621_83274859_83276700_83276861_83286069_83286199_83316950
89936	chr2	-	3387	2	FSM	ENSMUSG00000059555.7	ENSMUST00000081869.7	3255	2	115	-247	0	247	multi-exon	FALSE	canonical	3	13	junction_1	0	34	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8377	False	NA	NA	False	NA	NA	NA	25086783	25082730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_25085938_25086603
89937	chrM	-	700	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTAATAACTGTGGCAC	900	False	NA	60	True	NA	NA	NA	15288	14588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14600_15300
89938	chr8	+	1022	1	Genic_Genomic	ENSMUSG00000031548.8	novel	NA	NA	NA	NA	37495	386	mono-exon	FALSE	NA	NA	NA	NA	NA	171	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCCAAGAAGACTTTGGG	NA	False	NA	NA	False	NA	NA	NA	23939012	23940034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_23939000_23940000
89939	chr11	+	4907	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	51269	1607	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	158	215	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATAGAAGAACTATAATGAT	NA	False	NA	NA	False	NA	NA	NA	62400702	62406850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62403098_62403729_62405717_62406325
89940	chr15	+	1580	9	FSM	ENSMUSG00000046434.17	ENSMUST00000231141.2	1541	9	-43	4	-3	-4	multi-exon	FALSE	canonical	3	59	junction_7	4388.75483480224	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAATGGAATGACAACTG	NA	False	NA	NA	False	NA	NA	NA	103148877	103153378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152385_103152456_103152682
89941	chr15	-	1723	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	18	2	18	-2	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	69698	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	49	False	NA	NA	False	NA	NA	NA	98832428	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
89942	chr9	+	1032	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	96	810	-4	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	5	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956850	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
89943	chr11	-	1241	1	Intergenic	novelGene_2307	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57446873	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445600_57446900
89944	chr1	+	4971	8	NNC	ENSMUSG00000026434.13	novel	5998	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	539.015201784794	301	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGATGTGTGCTTCGTG	9282	False	NA	NA	False	NA	NA	NA	131838271	131864054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350_131857501_131858771_131861889_131862932
89945	chr3	+	1925	14	NNC	ENSMUSG00000001416.14	novel	1977	14	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	689.435941302572	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	3856	False	NA	NA	False	NA	NA	NA	88204474	88229071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228747
89947	chr7	-	1432	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	71	8	-13	-6	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	46369	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398355	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
89948	chrM	+	1138	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	6	0	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	13	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATGTCTTGATAGTATA	-2	True	NA	87	True	NA	NA	NA	14144	15282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
89949	chr11	+	2756	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	-15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	754.535489924467	23	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTATAGATGCGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	20151416	20176848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20175655_20175732
89950	chr15	-	3414	11	FSM	ENSMUSG00000016664.17	ENSMUST00000165095.9	3186	11	-232	4	-223	0	multi-exon	FALSE	canonical	3	62	junction_10	172.10531659423	285	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCTTGCATCCACCC	NA	False	NA	NA	False	NA	NA	NA	83317248	83260322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316864
89951	chr10	+	2610	7	Antisense	novelGene_ENSMUSG00000020063.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAGGGAAGAAAGACTCA	NA	False	NA	NA	False	NA	NA	NA	63155500	63171660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_63156741_63157524_63158078_63159743_63159930_63160901_63160982_63161814_63161970_63167526_63167675_63171412
89952	chr4	-	5780	38	NNC	ENSMUSG00000040738.11	novel	3433	28	NA	NA	-3	7375	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	206.629711895066	482	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGCGCCGGCGCCAACT	-4	True	NA	NA	False	NA	NA	NA	11254261	11191782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_11191814_11192678_11192716_11192812_11192909_11192989_11193045_11193923_11194076_11195017_11195154_11197150_11197300_11198727_11198823_11199294_11199430_11201302_11201415_11202187_11202347_11202982_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
89953	chr15	+	3487	22	NNC	ENSMUSG00000022369.14	novel	3144	22	NA	NA	-23314	-3486	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.2294047133665	3326	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCTGAAGGAGGGGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	55397489	55470723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55397734_55402425_55402547_55403517_55403606_55406719_55406781_55411537_55411636_55418719_55418840_55420653_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039
89954	chr6	+	2610	2	ISM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	14730	-2120	9862	2120	3prime_fragment	FALSE	canonical	3	6747	junction_1	0	98	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGTGGAGTGTAAGTAT	NA	False	NA	NA	False	NA	NA	NA	67258724	67263415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_67258806_67260886
89955	chr10	-	1253	2	Genic_Genomic	ENSMUSG00000047146.18	novel	13986	11	NA	NA	1729	2974	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAAAATTTTTTTTAGT	NA	False	NA	NA	False	NA	NA	NA	62714064	62712677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_62712856_62712989
89956	chr1	+	3887	15	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-5618	-2	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	93.1526068516888	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAACCACAAGTATACAT	NA	False	NA	NA	False	NA	NA	NA	132399484	132433391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132399806_132405044_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
89957	chr11	-	5026	2	Intergenic	novelGene_2332	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	79	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGACCGTTTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	57450918	57445638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57447242_57447495
89958	chr7	+	3774	17	NNC	ENSMUSG00000030983.5	novel	1244	7	NA	NA	-7	39000	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	695.884820637546	32	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAGGCTGTGAATGGAAA	1315	False	NA	-81	True	NA	NA	NA	133311069	133361874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_133311258_133315916_133315992_133316627_133316709_133319327_133319516_133320832_133321008_133322435_133323128_133323879_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335860_133335942_133336035_133338914_133339163_133344156_133344529_133350569_133350724_133361131_133361642_133361748
89959	chr13	-	2310	5	NNC	ENSMUSG00000113450.2	novel	2492	4	NA	NA	56	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.8597153000874	1	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGTGGTTAAAAGGCT	9607	False	NA	NA	False	NA	NA	NA	62614551	62600818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62601396_62601493_62603008_62604500_62604562_62604746_62604874_62614520
89960	chrM	+	2114	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	-64	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCATTATGTATGTGACATA	-3	True	NA	22	True	NA	NA	NA	1093	3643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2718_3153
89961	chr15	+	3808	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	64	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	232.061799035146	417	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGATGGTTAATGTTGCA	NA	False	NA	-30	True	NA	NA	NA	101982362	102005602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003572
89963	chr4	+	3105	5	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	12	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	184.772156993417	5	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCATTGGTTTACTTAA	NA	False	NA	NA	False	NA	NA	NA	98615041	98626710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615239_98615631_98615708_98621359_98622316_98624682_98624900_98625051
89964	chr1	-	9111	14	Antisense	novelGene_ENSMUSG00000088363.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGGCTGCGGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	118612892	118555675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_118555832_118580029_118580106_118580596_118580703_118581443_118581550_118584094_118584249_118586735_118586847_118589707_118589800_118592486_118592538_118592627_118592717_118593840_118593935_118596358_118596464_118597117_118597260_118603302_118603355_118605115
89965	chr8	-	2794	3	ISM	ENSMUSG00000046691.15	ENSMUST00000175940.2	2890	4	5889	-17	5889	-14	3prime_fragment	FALSE	canonical	3	308	junction_2	21	378	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTCTGTTTACTCTCT	NA	False	NA	NA	False	NA	NA	NA	107613958	107610508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_107613159_107613551_107613670_107613932
89966	chr9	-	4192	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	-2193	0	173	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	382	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCTCTTATATAGTAAGT	NA	False	NA	NA	False	NA	NA	NA	65792338	65738244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
89967	chr15	-	4073	10	NNC	ENSMUSG00000023022.15	novel	4243	11	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	306.539144178326	995	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	7287	False	NA	NA	False	NA	NA	NA	99773288	99676350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717761_99741551_99741705_99773213
89968	chr7	+	3882	15	Antisense	novelGene_ENSMUSG00000040725.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	593	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGGCGGGAAAAGGCGA	NA	False	NA	NA	False	NA	NA	NA	25420589	25454382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_25421789_25422230_25422427_25423982_25424268_25425346_25425640_25426159_25426338_25432449_25432572_25432669_25432792_25433983_25434250_25440251_25440362_25442345_25442452_25444517_25444660_25445774_25445846_25447746_25447902_25450289_25450416_25453871
89969	chr1	-	4138	16	NNC	ENSMUSG00000037474.14	novel	4230	16	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.554265918705	83	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCTTTGTGGAAGAGTGT	NA	False	NA	NA	False	NA	NA	NA	191307627	191269479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_191270909_191270950_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
89970	chr9	+	2355	1	Antisense	novelGene_ENSMUSG00000039952.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGCTGCAGACACCTAGA	4018	False	NA	NA	False	NA	NA	NA	108084490	108086845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108084500_108086800
89971	chr3	-	6581	33	NNC	ENSMUSG00000015697.15	novel	4622	22	NA	NA	-20	8288	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	102.418369743604	753	91	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCCGCGGCTCCCTCCC	1622	False	NA	NA	False	NA	NA	NA	95264533	95222547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95222657_95227372_95227545_95227948_95228069_95228250_95228369_95228497_95228559_95228646_95228695_95228882_95228977_95229139_95229269_95229435_95229542_95229627_95229783_95229957_95230617_95230667_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
89972	chr2	+	4078	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	47.0063573693612	5	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	152068795	152123767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888_152121029_152121114
89973	chr14	-	2290	8	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	116005	0	49221	0	3prime_fragment	FALSE	canonical	3	557	junction_4	33.1206822368854	462	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	14535811	14518184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792
89974	chrX	-	5378	2	FSM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	-24	-52	-24	52	multi-exon	FALSE	canonical	3	249	junction_1	0	481	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGTGGAAGGACTAAGCAA	NA	False	NA	NA	False	NA	NA	NA	101200721	101185269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101190440_101200513
89975	chr19	+	1179	2	Genic_Genomic	ENSMUSG00000068466.7	novel	645	1	NA	NA	-125	485	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTAAATACAATTTTTT	NA	False	NA	NA	False	NA	NA	NA	29137392	29138647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_29137400_29137475
89976	chr11	-	4116	4	NNC	ENSMUSG00000058546.9	novel	588	4	NA	NA	30	2217	intron_retention	FALSE	non_canonical	0	0	junction_1	0	398	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCGCTCCTCCCCGCGTTCC	5993	False	NA	NA	False	NA	NA	NA	78074380	78069540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78069882_78070194_78070276_78070362_78070448_78070771
89977	chr2	-	4326	6	NNC	ENSMUSG00000078903.11	novel	1956	6	NA	NA	18	-1065	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	85.2455277419291	810	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	175048651	175033922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175036765_175037017_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
89978	chr4	+	5964	5	NNC	ENSMUSG00000041241.13	novel	3733	4	NA	NA	-9	2314	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	87.7638877899105	506	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAAAGTCTTAACAGTAC	NA	False	NA	NA	False	NA	NA	NA	138162024	138171890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261_138169091_138169130
89979	chr7	-	672	3	NNC	ENSMUSG00000030793.5	novel	3800	3	NA	NA	117	-993	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	654.5	21	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGGGATGTTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	127592922	127591804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_127592138_127592286_127592316_127592612
89980	chr15	-	849	5	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	861.863968384803	25	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTGCCTTTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	51728879	51649962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651414_51662592_51662756_51705863_51706021_51728721
89981	chr3	-	1744	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	147	0	147	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	43167	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30701871	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
89982	chr2	+	7272	12	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078866.11	novel	794	4	NA	NA	-12	65403	multi-exon	TRUE	non_canonical	0	0	junction_1	50.37856687124	168	48	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACCACCCTTAGGGTTAG	NA	False	NA	NA	False	NA	NA	NA	177156513	177266959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177156677_177164781_177164821_177165078_177165206_177199035_177199097_177200246_177200435_177200518_177200771_177200938_177204243_177259250_177261602_177261685_177262086_177263225_177263286_177263477_177263607_177266761
89983	chr15	-	2533	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-108	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	650	False	NA	NA	False	NA	NA	NA	36793871	36771019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771249_36771555_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
89984	chr1	+	3085	8	Antisense	novelGene_ENSMUSG00000009905.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTGGGAGATCACATGCA	NA	False	NA	NA	False	NA	NA	NA	106659981	106687394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_106662361_106667060_106667143_106671396_106671591_106675217_106675313_106675499_106675565_106680939_106680998_106683172_106683262_106687271
89985	chrX	-	2561	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	-58	-159	-58	159	multi-exon	FALSE	canonical	3	68	junction_3	69.0213779729436	574	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGTTCTTGGGAATTT	NA	False	NA	NA	False	NA	NA	NA	36374033	36355171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
89986	chr4	+	9034	21	NNC	ENSMUSG00000028437.15	novel	3456	7	NA	NA	-7	74382	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	144.983619764441	414	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCACCGACCAATGGTCA	-6	True	NA	NA	False	NA	NA	NA	41349040	41464907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680_41391612_41392015_41392252_41392876_41392971_41393436_41395666_41397547_41397655_41400434_41400511_41403791_41403895_41404675_41404805_41409737_41409819_41413825_41414045_41414901_41415000_41423451_41423635_41428343_41428983_41429266_41429417_41464714
89987	chr9	+	500	1	FSM	ENSMUSG00000074516.7	ENSMUST00000213318.2	480	1	101	-121	101	121	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	129	False	NA	NA	False	NA	NA	NA	7751826	7752326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_7751800_7752300
89988	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	78	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
89989	chr13	+	798	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	123	17	123	-17	mono-exon	FALSE	NA	NA	NA	NA	NA	9	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAACAAAAAAAAAAAAAAA	8085	False	NA	NA	False	NA	NA	NA	74554650	74555448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554600_74555400
89990	chr8	-	1512	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	3	-166	3	166	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	221	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCACACCCAGCTAACCAA	NA	False	NA	NA	False	NA	NA	NA	23727672	23716465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
89991	chr16	+	1647	8	ISM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	939	0	135	0	3prime_fragment	FALSE	canonical	3	563	junction_1	518.386743972616	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	7012	False	NA	NA	False	NA	NA	NA	22927466	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
89992	chr7	-	2022	12	NNC	ENSMUSG00000006095.13	novel	1416	6	NA	NA	-1115	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	430.329107191075	777	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGTGCAAGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	29932812	29923561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29927366_29927487_29930550_29930695_29931004_29931828_29931904_29931961_29932173_29932249_29932331_29932409_29932491_29932539_29932705
89993	chr19	+	3073	13	NNC	ENSMUSG00000040385.8	novel	1473	7	NA	NA	-13	6195	intron_retention	FALSE	non_canonical	0	0	junction_4	1699.33306157641	85	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCGCGCACCGTCCCCT	3358	False	NA	NA	False	NA	NA	NA	4242144	4251614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243854_4245106_4246082_4246179_4246384_4247113_4247254_4247340_4247590_4247671_4247782_4250271_4250370_4250462_4250578_4250926_4251399_4251481
89994	chr8	+	1148	5	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	28	1286	at_least_one_novel_splicesite	FALSE	canonical	3	127	junction_1	2920.50820705918	50	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTGTATTAATTTTT	NA	False	NA	NA	False	NA	NA	NA	57965035	57967529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965163_57965612_57965783_57966095_57966242_57966323_57966499_57966999
89996	chrM	-	678	1	Antisense	novelGene_ENSMUSG00000064354.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11001	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGGCCATATAAGATATAT	8489	False	NA	NA	False	NA	NA	NA	7699	7021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7000_7700
89997	chr1	-	2849	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-21	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	646.520772578113	4	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGACTTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20890505	20873237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882815_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
89998	chr9	+	747	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-213	-44	213	mono-exon	FALSE	NA	NA	NA	NA	NA	30	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	96777666	96778413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
89999	chr17	+	2698	1	Intergenic	novelGene_219	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	153	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCGGCCTCCGCCCGCCCG	NA	False	NA	NA	False	NA	NA	NA	40153888	40156586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156600
90000	chr1	+	5427	3	ISM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	17645	27	-962	-27	3prime_fragment	FALSE	canonical	3	1163	junction_1	78.5	883	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATAAAAGGGCTTTTG	8368	False	NA	NA	False	NA	NA	NA	131855938	131864032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_131855955_131857350_131857501_131858771
90001	chrM	+	2604	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	13	-1035	13	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	6	84	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	10	False	NA	35	True	NA	NA	NA	1106	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
90002	chr9	+	3716	18	ISM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	7417	40	-5418	-40	3prime_fragment	FALSE	canonical	3	235	junction_16	23.4699248026536	1	122	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCTCGGGTTGTATAGAA	NA	False	NA	NA	False	NA	NA	NA	119731360	119755612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
90003	chr13	-	2591	16	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2515.83804990173	7	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTATGACGTGTGCCCA	4766	False	NA	NA	False	NA	NA	NA	58550315	58539054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58539877_58539958_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
90004	chr11	-	863	9	ISM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	0	674	0	24	5prime_fragment	FALSE	canonical	3	16927	junction_6	2010.17231459768	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTAAAATTAACCTTTGA	NA	False	NA	NA	False	NA	NA	NA	33113076	33106001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
90005	chr11	-	2679	10	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-11	167	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_7	78.9567782999419	1	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACACTGCTGAACTATGA	4392	False	NA	NA	False	NA	NA	NA	94544801	94535654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540288_94540346_94540833_94540965_94541048_94541850_94544521
90006	chr5	+	2012	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	470	0	0	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	756	False	NA	NA	False	NA	NA	NA	77099623	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
90007	chr6	+	5855	12	NNC	ENSMUSG00000038388.15	novel	616	3	NA	NA	33882	3512	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	332.870510648667	405	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATATTGGTCTTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	50121721	50179431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_50121834_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
90008	chr12	+	2410	1	Genic_Genomic	ENSMUSG00000114025.2	novel	NA	NA	NA	NA	-630	-507	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAGAGAAATTCTA	NA	False	NA	NA	False	NA	NA	NA	17951759	17954169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_17951800_17954200
90009	chr2	-	3472	7	Fusion	ENSMUSG00000078862.11_ENSMUSG00000095362.8	novel	1807	5	NA	NA	3	1478	multi-exon	TRUE	non_canonical	0	0	junction_1	17.2409396495667	1108	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTGTGTAGGAAGATAAT	NA	False	NA	NA	False	NA	NA	NA	177599078	177472105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_177473181_177473321_177474282_177587687_177588804_177589962_177590024_177590229_177590357_177595474_177595530_177599000
90010	chr12	+	7158	8	Fusion	ENSMUSG00000020654.16_ENSMUSG00000096199.3	novel	3840	2	NA	NA	9131	0	multi-exon	FALSE	non_canonical	0	0	junction_1	74.1845464957191	1228	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCATTACCTAAAATAGAT	NA	False	NA	NA	False	NA	NA	NA	4262398	4289950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_+_4264629_4265256_4265431_4266518_4266778_4267206_4267321_4281513_4281681_4283528_4283660_4283783_4284279_4286362
90011	chr4	-	3477	5	NNC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-26	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	136.024584175067	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCGATGTGTGGTTCTG	14	True	NA	NA	False	NA	NA	NA	58553210	58435259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58437635_58486476_58487225_58504621_58504782_58533648_58533762_58553129
90012	chr4	-	3531	5	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-52	1	combination_of_known_splicesites	FALSE	canonical	2	16	junction_4	115.15288750179	321	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTGGTTCTGGTCTGT	-12	True	NA	NA	False	NA	NA	NA	58553236	58435253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58543809_58543949_58553133
90013	chr1	-	5377	2	Genic_Genomic	ENSMUSG00000103975.2	novel	507	1	NA	NA	-3324	2814	multi-exon	FALSE	canonical	0	0	junction_1	0	509	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCCATTAGGAAATCTTC	NA	False	NA	NA	False	NA	NA	NA	131864032	131857387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_131857508_131858775
90014	chr15	+	2476	12	ISM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	194	3625	-5	999	5prime_fragment	FALSE	canonical	3	1727	junction_10	113.653744125387	769	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAAAGAAACCCTTGG	NA	False	NA	NA	False	NA	NA	NA	81756703	81795709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613
90015	chr2	+	2568	21	FSM	ENSMUSG00000017999.17	ENSMUST00000018143.16	2714	21	130	16	13	-16	multi-exon	FALSE	canonical	3	666	junction_12	71.8993045863449	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGACCTTCTTGAACAAG	NA	False	NA	NA	False	NA	NA	NA	166857242	166876851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
90016	chrX	-	5039	2	Intergenic	novelGene_4013	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	106	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGATGGAAAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	116231727	116226550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116227473_116227610
90017	chr11	+	2938	5	NNC	ENSMUSG00000014245.9	novel	573	7	NA	NA	50516	1618	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	139.877401677326	620	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATGATTTGAGAATTAT	NA	False	NA	NA	False	NA	NA	NA	62399949	62406861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62400199_62400645_62400678_62402963_62403098_62403729_62405717_62406325
90018	chr11	+	1524	3	FSM	ENSMUSG00000020372.16_ENSMUSG00000064780.3	ENSMUST00000136703.2	766	3	-14	-744	0	205	multi-exon	FALSE	canonical	1	1907	junction_2	2329	60	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCAGAATGGGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	48691186	48694238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099
90019	chrM	+	1564	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-186	0	-186	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-1	True	NA	NA	False	NA	NA	NA	9980	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10000_11500
90020	chr13	+	3150	5	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	79.0454774164847	2	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	NA	False	NA	NA	NA	97619258	97633515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629996_97630134_97630239_97630912
90021	chr5	+	3184	19	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	40	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACCCGCGCCAAAGTCCT	NA	False	NA	NA	False	NA	NA	NA	31315091	31337222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323358_31323702_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331111_31331436_31331577_31331839_31336589
90022	chr17	+	1777	11	NNC	ENSMUSG00000068039.14	novel	1902	11	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_2	1387.33984300891	1	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGACCACCTGGGTTCCT	NA	False	NA	NA	False	NA	NA	NA	13135332	13143438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136929_13137056_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
90023	chr10	+	2013	3	NNC	ENSMUSG00000038587.11	novel	5956	3	NA	NA	8989	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	831.5	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCACTGTTTTTTTATTA	NA	False	NA	22	True	NA	NA	NA	4306756	4309469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_4307167_4307328_4307940_4308477
90024	chr7	+	3443	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	297	-1018	2	1018	multi-exon	FALSE	canonical	3	986	junction_1	0	1684	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCCTTGTTCAGGAT	372	False	NA	NA	False	NA	NA	NA	44465808	44481254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
90025	chr9	+	3562	30	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	6	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.947650556986	87	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAGTATAAAAATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	72569725	72655416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407_72654747_72654867
90026	chr19	-	4871	4	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22705262	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773_22704319_22704613_22704723_22704769
90027	chr1	-	4308	18	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	0	-131	combination_of_known_junctions	FALSE	canonical	3	78	junction_17	104.361959952471	102	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTCTGTTCATATTTA	NA	False	NA	NA	False	NA	NA	NA	133589118	133547730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588993
90028	chrX	-	3647	5	NNC	ENSMUSG00000061273.4	novel	4234	4	NA	NA	29	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	58.7388287251287	394	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACCTTGTGTTTGGTAG	NA	False	NA	NA	False	NA	NA	NA	55643400	55630874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_55631700_55632254_55634664_55636437_55636542_55640749_55640803_55643144
90029	chr2	+	3577	25	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	181.879061619406	5	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGTGGTTTTTATTGTT	NA	False	NA	NA	False	NA	NA	NA	166747972	166788306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764141_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
90030	chr16	+	2170	9	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-3	intron_retention	FALSE	canonical	3	380	junction_8	685.205808498439	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATAGGTGGTCTGGCC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930647_22931100_22931212_22931916
90031	chr17	+	1885	3	Antisense	novelGene_ENSMUSG00000071256.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	4	588	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAACTCTACAGAAACCA	NA	False	NA	NA	False	NA	NA	NA	23776407	23781693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_23776518_23777629_23777728_23780016
90032	chr2	+	3914	4	FSM	ENSMUSG00000078872.10	ENSMUST00000108970.9	948	4	-106	-2860	-106	2547	multi-exon	FALSE	canonical	3	143	junction_2	72.8666971637631	289	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATAAAATTATTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	176766006	176781687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_176766152_176776035_176776163_176776368_176776430_176778106
90033	chr1	-	1507	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	783	1	NA	NA	-161	2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24653221_24653339
90034	chr8	+	4235	20	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	2992	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	770.576644890675	13	83	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111763539	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777956_111778894_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
90035	chrUn_JH584304v1	-	4492	6	Intergenic	novelGene_4599	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	149	junction_3	309.65464634008	17	43	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGGGACTGACTGCCTCA	NA	False	NA	NA	False	NA	NA	NA	59735	50877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55702_58563_58836_59591
90036	chrX	-	4876	6	NIC	ENSMUSG00000031167.17	novel	1338	7	NA	NA	-5	-22	intron_retention	FALSE	canonical	3	764	junction_1	193.394312222464	6384	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTAAAATAATTTTAAAAT	6494	False	NA	NA	False	NA	NA	NA	8012003	8005238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
90037	chr5	+	2126	2	NIC	ENSMUSG00000034211.15	novel	2182	3	NA	NA	3	20	intron_retention	FALSE	canonical	3	902	junction_1	0	166	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGGGAGACAAGGTTTC	794	False	NA	NA	False	NA	NA	NA	129792600	129795775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129793931_129794979
90038	chr2	-	2311	13	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	230.253287465975	2	15	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTTTGCTCTCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	165726574	165669104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684806_165687945_165688085_165693919_165694069_165717624_165717696_165726098_165726160_165726527
90039	chr11	+	5077	8	FSM	ENSMUSG00000039850.17	ENSMUST00000106245.9	5126	8	49	0	3	0	multi-exon	FALSE	canonical	3	37	junction_3	3.65892813567591	220	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAATACACTACCAAC	6586	False	NA	NA	False	NA	NA	NA	119382504	119402263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
90040	chr17	-	2158	8	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	30	-240	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	326.525306079336	13	19	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCCTTGTGTCTGATTG	NA	False	NA	NA	False	NA	NA	NA	7050153	7005679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007211_7020401_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
90041	chr9	+	729	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-195	-44	195	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTAAATAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96777666	96778395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
90042	chrM	+	997	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	147	0	147	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-5	True	NA	24	True	NA	NA	NA	14291	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14300_15300
90043	chr11	-	2420	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	-8	-23	0	-2	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	2	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGACTTTGCTTTACAA	NA	False	NA	NA	False	NA	NA	NA	70860788	70833904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
90044	chr1	+	2711	12	Genic_Genomic	ENSMUSG00000097573.3	novel	2307	1	NA	NA	-19236	-1192	multi-exon	FALSE	non_canonical	0	0	junction_1	0	113	23	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAGACTGGTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	59139755	59160106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_59140358_59144704_59144830_59145705_59145794_59146612_59146686_59147195_59147384_59147829_59147957_59148196_59148355_59149145_59149268_59153242_59153382_59155035_59155097_59157133_59157166_59159110
90045	chr13	+	4100	1	ISM	ENSMUSG00000045767.10	ENSMUST00000057844.10	4652	2	6277	0	6277	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTACTACTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	55847213	55851313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55847200_55851300
90046	chr3	-	4210	28	NIC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	275	junction_1	228.423841363276	242	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3543	False	NA	NA	False	NA	NA	NA	89959786	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
90047	chr10	-	1301	5	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-32	-1	intron_retention	FALSE	canonical	3	953	junction_4	141.850934082226	1754	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCATGTCGGAATGAGTG	NA	False	NA	NA	False	NA	NA	NA	80634426	80631934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_80632357_80632424_80632657_80633606_80633674_80633743_80633812_80633914
90048	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	364	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
90049	chrX	+	3286	15	NIC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	87	-18	intron_retention	FALSE	canonical	3	151	junction_1	697.349135173	3	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGGTTTATGTCCTATT	NA	False	NA	NA	False	NA	NA	NA	74139546	74153365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_74140321_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
90050	chr4	+	2458	4	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	3	10898	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	6.34209919681348	22	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATCTACCCCATTTTTTG	2286	False	NA	NA	False	NA	NA	NA	147106309	147119166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147106458_147107818_147107913_147115003_147115080_147117026
90051	chr15	+	1557	10	NNC	ENSMUSG00000059883.17	novel	2831	12	NA	NA	-24	5180	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	9.63788819653397	92	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTCTTGGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	94441499	94460014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94459797
90052	chr4	+	9767	42	NNC	ENSMUSG00000038827.12	novel	4275	6	NA	NA	-51983	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	44.8594606255416	688	27	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAAGGTGGCTTTCTG	4445	False	NA	NA	False	NA	NA	NA	56750361	56809593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_56751720_56755303_56755378_56757114_56757272_56758212_56758340_56758962_56759076_56759800_56759915_56762248_56762315_56762843_56762903_56767813_56767876_56769012_56769218_56770982_56771078_56771431_56771556_56772379_56772532_56773017_56773100_56773196_56773336_56774520_56774600_56774685_56774769_56775017_56775091_56775424_56775541_56776689_56776794_56776882_56776938_56778957_56779063_56779656_56779764_56781025_56781217_56784536_56784636_56786585_56786753_56787740_56787974_56790131_56790228_56790889_56791012_56792026_56792118_56792384_56792482_56794089_56794175_56795504_56795587_56796503_56796586_56798657_56798809_56799972_56800138_56802158_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
90053	chr9	+	4175	24	NNC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	8	2435	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	234.841248715592	1041	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGGCGTGGACCCTTTAA	5850	False	NA	NA	False	NA	NA	NA	21336211	21421490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718_21419687_21420225_21420410_21420548_21420644_21421285
90054	chr3	+	4005	20	NNC	ENSMUSG00000028101.19	novel	2858	14	NA	NA	-15	2465	intron_retention	FALSE	non_canonical	0	0	junction_14	82.2147380820175	350	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCAGCTCTGGCCACCG	2631	False	NA	NA	False	NA	NA	NA	96603742	96615851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164_96613556_96613679_96613848_96614228_96614368_96614523_96614619_96614874_96614973_96615286_96615492_96615643
90055	chr4	+	2509	6	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14331	773	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	41.2766277692352	786	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	145158978	145178231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145160315_145160458_145173046_145173196_145173287_145173342_145176036_145176245_145176328
90056	chr3	+	2921	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	-1	11	-1	-11	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	201	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAACATTTAAAGT	3286	False	NA	NA	False	NA	NA	NA	96604397	96613375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
90057	chr2	-	4734	19	Fusion	ENSMUSG00000014867.10_ENSMUSG00000015790.17	novel	1173	9	NA	NA	6425	0	multi-exon	TRUE	non_canonical	0	0	junction_9	313.403405285336	2510	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	NA	False	NA	NA	NA	26816970	26803394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804224_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268_26806510_26806710_26806876_26807443_26807544_26808884_26809068_26809203_26809369_26809612_26810517_26810568_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780
90058	chr15	-	3210	15	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-12	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1138.65445117633	10	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTGTTTCAAACTGGATC	NA	False	NA	NA	False	NA	NA	NA	81284256	81247886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248306_81248405_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81280305_81280376_81283685_81283889_81283989
90060	chr17	+	3949	10	FSM	ENSMUSG00000068039.14	ENSMUST00000129632.8	3419	10	12	-542	12	37	multi-exon	FALSE	canonical	3	3235	junction_6	171.650232942271	339	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCTGGCTCCTGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	13135347	13143991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
90061	chr2	+	4210	13	NIC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-3	-3	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	43.5398923083443	87	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTCCATGCAGCCTGAG	NA	False	NA	NA	False	NA	NA	NA	152068792	152123769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152068953_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
90062	chrX	+	4488	7	Intergenic	novelGene_3919	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	128	129	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTTTCTCGTTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	34415871	34745845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_34416003_34416221_34417555_34591118_34591241_34591457_34592122_34740546_34740811_34740916_34741869_34744823
90063	chrY	+	2559	5	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	454	5937	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	873.386619716606	184	50	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	5516	False	NA	NA	False	NA	NA	NA	90797570	90833671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrY_+_90797624_90797949_90798769_90803039_90804081_90804157_90804687_90833554
90064	chrM	+	1408	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-291	261	-291	-261	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAATCTAATAGGAGAATTA	-2	True	NA	NA	False	NA	NA	NA	9875	11283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11300
90065	chr4	-	3500	5	NNC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-112	-8	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	119.871806526806	315	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGGCGATGTGTGGTT	NA	False	NA	NA	False	NA	NA	NA	58554010	58435262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58437635_58486476_58487225_58504621_58504782_58543809_58543949_58553929
90066	chr18	-	5549	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	-3	186	-3	-186	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	222	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCCAATAAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	24153870	24142944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
90067	chr3	-	2922	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	33	2	33	-2	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	1032	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTTTTCTGTAATT	2749	False	NA	NA	False	NA	NA	NA	65300011	65287077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
90068	chr11	+	1768	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	60	272	16	-272	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	2883	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATATATCATGCCTCCA	3051	False	NA	NA	False	NA	NA	NA	75623754	75656399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
90069	chr8	-	3255	20	Intergenic	novelGene_1755	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAGTGGCATCCATTTC	NA	False	NA	NA	False	NA	NA	NA	111782201	111763578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111763704_111766761_111766951_111767226_111767374_111768108_111768299_111768869_111769016_111769292_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
90070	chr7	+	510	2	Genic_Genomic	ENSMUSG00000046721.12	novel	653	1	NA	NA	-22	33	multi-exon	FALSE	canonical	0	0	junction_1	0	10	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	44974366	44975074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_44974614_44974811
90071	chr1	+	5851	7	FSM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	144	3	144	-3	multi-exon	FALSE	canonical	3	1163	junction_5	186.902306626275	80	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGATGTGTGCTTCGTGTG	9448	False	NA	NA	False	NA	NA	NA	131838437	131864056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350_131857501_131858771
90072	chr4	+	4009	7	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	2	41585	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	154.576572179185	941	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATTATGTCCATCCGCT	NA	False	NA	NA	False	NA	NA	NA	146206902	146256589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146240246_146240316_146250678_146250737_146251579_146251707_146253158
90073	chr17	-	1010	6	NNC	ENSMUSG00000036438.15	novel	1205	6	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2921.95010224336	8	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAATTGTTGCTCTGAATC	NA	False	NA	NA	False	NA	NA	NA	87754291	87740844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_87741355_87742492_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
90074	chr11	-	4065	13	FSM	ENSMUSG00000064090.15	ENSMUST00000078362.13	1889	13	58	-2234	58	2152	multi-exon	FALSE	canonical	3	73	junction_12	13.1368332899862	216	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACAAAACCCCAAACATCT	NA	False	NA	NA	False	NA	NA	NA	26543862	26419169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
90075	chr1	-	726	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-41	-31	41	mono-exon	FALSE	NA	NA	NA	NA	NA	11	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
90076	chrX	+	1326	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-28	-88	-28	88	mono-exon	FALSE	NA	NA	NA	NA	NA	19455	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACACTTGAACACAACTCTT	NA	False	NA	NA	False	NA	NA	NA	13068781	13070107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
90077	chr16	+	564	1	Intergenic	novelGene_3736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
90079	chr7	-	4262	26	ISM	ENSMUSG00000040488.19	ENSMUST00000121175.8	5118	30	4627	-2	4577	-2	3prime_fragment	FALSE	canonical	3	195	junction_24	112.982122479621	568	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCCTCTGCCTGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	27028461	27004562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610_27027776_27028164_27028288_27028392
90080	chrM	+	2184	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1224	-3	-1224	3	mono-exon	FALSE	NA	NA	NA	NA	NA	18	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	30	False	NA	10	True	NA	NA	NA	1526	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3700
90081	chrX	-	1630	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGTGTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	135642027	135633696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135635017_135635176_135635251_135636294_135636372_135640553_135640644_135641958
90082	chr8	+	1335	3	Fusion	ENSMUSG00000074412.5_ENSMUSG00000110172.2	novel	882	3	NA	NA	2	75	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTACATTGGGAATTCATC	5190	False	NA	NA	False	NA	NA	NA	25916869	25944795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_25917489_25935479_25935660_25944259
90083	chr2	-	593	3	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11406	192	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	11426247	11413649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414015_11425958_11426082_11426142
90084	chr16	+	2232	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	380	junction_10	673.980570936581	397	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930647_22931100_22931212_22931916
90086	chr13	+	4917	6	ISM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	27037	22	-2620	-22	3prime_fragment	FALSE	canonical	3	382	junction_1	43.6513459128124	3	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGTTTTATAACAAAAAAAT	6647	False	NA	NA	False	NA	NA	NA	54796633	54811854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
90087	chrX	-	3072	11	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	1	-304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	184.551049848003	5	53	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAATATGGATAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	156275039	156227154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243411_156244169_156244327_156244956_156245063_156248846_156248885_156249393_156249488_156252983_156253105_156274900
90088	chr4	+	3071	7	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	1250	5	NA	NA	-18	0	multi-exon	FALSE	non_canonical	0	0	junction_1	33.1796457016781	271	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	2351	False	NA	NA	False	NA	NA	NA	147445741	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147445910_147639766_147639872_147641551_147641685_147661528_147661587_147665698_147665826_147666658_147666774_147667290
90089	chr14	-	6403	15	FSM	ENSMUSG00000048922.19_ENSMUSG00000093726.2	ENSMUST00000163100.8	3841	15	52	-2614	52	-564	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	524	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGAGTTGAAAGTTTGT	NA	False	NA	NA	False	NA	NA	NA	67953007	67911189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
90091	chr4	-	7080	3	Antisense	novelGene_ENSMUSG00000078503.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGAACTTCCTGTCACTT	6700	False	NA	NA	False	NA	NA	NA	145269980	145237339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237493_145257378_145257483_145263157
90092	chr6	-	3714	3	NNC	ENSMUSG00000048668.17	novel	3697	2	NA	NA	-17	1	intron_retention	FALSE	non_canonical	0	0	junction_2	170	502	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTGTCTCAGTGGTCC	630	False	NA	NA	False	NA	NA	NA	128339675	128333961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128335157_128336068_128336557_128337644
90093	chr19	-	637	2	Genic_Genomic	ENSMUSG00000062456.5	novel	714	1	NA	NA	1	-13	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	32443977	32443277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_32443784_32443846
90094	chr1	-	510	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	406	-25	406	25	mono-exon	FALSE	NA	NA	NA	NA	NA	46	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAGGTAACAACAACAACAA	NA	False	NA	NA	False	NA	NA	NA	86836999	86836489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837000
90095	chr5	+	2102	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	115	50	-15	-50	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	2785	81	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAATGCAGTAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	45650830	45669983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
90096	chr13	+	9407	26	NNC	ENSMUSG00000021488.9	novel	1001	6	NA	NA	50	-296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	89.7128218260913	384	69	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTGGAATTGAGACCC	NA	False	NA	NA	False	NA	NA	NA	55359681	55463272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425086_55425241_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443797_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459758_55459797_55459931
90097	chr5	-	2863	4	FSM	ENSMUSG00000072762.10	ENSMUST00000112547.8	2001	4	-387	-475	-98	475	multi-exon	FALSE	canonical	3	85	junction_1	29.0631496343164	171	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGCCATATGCCTTTTT	7559	False	NA	NA	False	NA	NA	NA	109899850	109883380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_109885666_109886815_109886877_109887064_109887192_109899460
90098	chr13	-	3457	5	Antisense	novelGene_ENSMUSG00000078952.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.29903810567666	510	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGCCTAACTCTCTCCTGC	NA	False	NA	NA	False	NA	NA	NA	97633515	97619261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_97619284_97619454_97619539_97625684_97625855_97629660_97630232_97630905
90099	chr16	+	1852	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-251	177	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1986.66465149506	3	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACAAAATTCCTACCAGAAT	NA	False	NA	NA	False	NA	NA	NA	84570759	84620095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606402_84609786_84609987_84612105_84612157_84613153_84613262_84618147_84618191_84619674
90100	chr7	-	2999	23	ISM	ENSMUSG00000003435.10	ENSMUST00000209141.2	3755	29	8129	1161	877	725	internal_fragment	FALSE	canonical	3	668	junction_10	41.6034258363697	1	71	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTCCCCAGCCAGCTAT	NA	False	NA	NA	False	NA	NA	NA	28030002	28015483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442
90101	chrM	-	726	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAACCCTAAGAGGTATAAC	5379	False	NA	NA	False	NA	NA	NA	1023	297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_300_1000
90102	chr17	+	5895	20	Antisense	novelGene_ENSMUSG00000024002.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	521	30	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAGAAAGAAAAAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	32414835	32448712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32416795_32417004_32417248_32417329_32417536_32417655_32417787_32417868_32418032_32418130_32418249_32419978_32420393_32421201_32421521_32421641_32421693_32430135_32430254_32431814_32432109_32432498_32432703_32433606_32433817_32439137_32439264_32440119_32440483_32440846_32441138_32443058_32443197_32443832_32443920_32444549_32444687_32448389
90103	chr4	+	2449	12	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGCCACCTCCCCCGCC	255	False	NA	NA	False	NA	NA	NA	137469054	137523629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882_137486043_137523551
90104	chr2	+	2138	7	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	20098	17	40	-17	3prime_fragment	FALSE	canonical	3	2736	junction_1	195.581753295706	181	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTAACACATTGTAGTG	NA	False	NA	NA	False	NA	NA	NA	162916704	162926591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
90105	chr9	-	3388	24	Antisense	novelGene_ENSMUSG00002075151.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTGCTTGTGGGGGCAG	NA	False	NA	NA	False	NA	NA	NA	21597522	21548612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21548831_21550006_21550135_21550511_21550685_21552204_21552381_21553719_21553887_21553994_21554046_21558644_21558777_21558912_21558970_21566920_21567045_21570121_21570270_21572000_21572168_21576144_21576210_21577057_21577169_21578459_21578703_21580228_21580343_21580842_21580951_21581777_21581865_21583336_21583385_21584464_21584632_21586361_21586525_21588743_21588972_21589609_21589689_21590223_21590443_21597307
90106	chr3	-	2788	7	Antisense	novelGene_ENSMUSG00000090005.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89969754	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960424_89960811_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966108_89967668
90108	chr5	+	922	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	923	278	-5	-2	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	121343466	121347026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
90109	chr15	+	2916	9	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	14936	0	2685	0	3prime_fragment	FALSE	canonical	3	809	junction_2	43.485450152896	8	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	101997143	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
90110	chr11	-	2800	11	NNC	ENSMUSG00000020152.8	novel	3631	9	NA	NA	-14	-103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	322.523239472755	3	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGACAAGTATTGGGAAG	1368	False	NA	NA	False	NA	NA	NA	20062881	20012406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_20012459_20012516_20013969_20014606_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
90111	chr17	-	3131	17	NIC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	5	junction_7	227.303898998675	116	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGTAGCCTTTTG	2184	False	NA	NA	False	NA	NA	NA	45744663	45702815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45723450_45723561_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
90112	chr19	+	7573	39	NNC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	3	37031	intron_retention	FALSE	non_canonical	0	0	junction_10	177.774655828236	52	65	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGAAGTGGGTGTGGCT	4132	False	NA	NA	False	NA	NA	NA	41921921	41969574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020_41933022_41933096_41933199_41933768_41933827_41933896_41934063_41934171_41935546_41936129_41936188_41936655_41936755_41937889_41938019_41938205_41938276_41938418_41938523_41939190_41939291_41940845_41941004_41942109_41942257_41942354_41942453_41942903_41942985_41943169_41943298_41943556_41943638_41943859_41944019_41944268_41944403_41944949_41945029_41945582_41945657_41946298_41946384_41951238_41951300_41951387_41951518_41951839_41951910_41952301_41952382_41952759_41952843_41954652_41954752_41958139_41958191_41969437
90113	chr11	-	1190	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	131	312	1	-88	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	7	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGATAGGACATAGTAATA	NA	False	NA	NA	False	NA	NA	NA	33113075	33102598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
90114	chr18	+	2261	4	FSM	ENSMUSG00000102428.2	ENSMUST00000044851.8	5080	4	2786	33	2593	-33	multi-exon	FALSE	canonical	3	109	junction_1	53.597263611743	4	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAATAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	37901418	37974893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_37901594_37958073_37958133_37966317_37966407_37972955
90115	chr11	-	4086	4	ISM	ENSMUSG00000000751.14	ENSMUST00000135770.8	2040	17	32238	-956	32238	1	3prime_fragment	FALSE	canonical	3	1486	junction_1	95.0368349641338	76	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTCTTTGACTGTAAAGG	NA	False	NA	NA	False	NA	NA	NA	75200776	75191174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940
90116	chr14	-	1171	1	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	132461	0	65677	0	mono-exon	FALSE	NA	NA	NA	NA	NA	358	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	-97	True	NA	NA	NA	14519355	14518184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_14518200_14519400
90117	chr13	+	2410	4	FSM	ENSMUSG00000113760.2	ENSMUST00000221828.2	569	4	-2	-1839	-2	1839	multi-exon	FALSE	canonical	3	110	junction_1	62.055530687352	103	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACCACCTTGGGTGGAG	NA	False	NA	NA	False	NA	NA	NA	66180020	66189900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_66180131_66186206_66186334_66186533_66186595_66187788
90118	chr4	-	1269	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-195	-72	195	mono-exon	FALSE	NA	NA	NA	NA	NA	43	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAGACAGAATAA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
90119	chr15	-	4026	17	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	-4682	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	523.3051063911	4	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96958519	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894387_96894501_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96958209
90120	chr4	-	2957	17	NNC	ENSMUSG00000019055.16	novel	3243	19	NA	NA	4669	-308	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	24.1666576867799	16	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATGAGAGATGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	148016496	147994517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005459_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083
90122	chr4	+	2077	3	FSM	ENSMUSG00000028811.13	ENSMUST00000128287.2	647	3	46	-1476	46	1476	multi-exon	FALSE	canonical	3	1802	junction_1	30	24	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTGAGTTCCAGGACAGC	901	False	NA	NA	False	NA	NA	NA	129083740	129092710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_129083866_129090622_129090770_129090905
90123	chr14	+	1966	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	772.590110789635	6	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271287_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288956_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
90124	chrX	+	2778	7	NIC	ENSMUSG00000067768.13	novel	1077	9	NA	NA	-7	379	intron_retention	FALSE	canonical	3	85	junction_1	77.3534456605235	17	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTATTATTAGCAGCTTT	NA	False	NA	NA	False	NA	NA	NA	72257947	72266438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72258064_72258379_72258962_72259646_72259716_72261328_72262392_72263579_72263679_72265472_72265569_72265685
90125	chr6	+	2164	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	46	1	46	-1	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	921	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGGTCTTATCTTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	122684572	122691591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
90126	chr17	-	11246	13	Antisense	novelGene_ENSMUSG00000092981.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	201	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTCGCACCCCGCCTGG	NA	False	NA	1	True	NA	NA	NA	24043707	24022198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_24022372_24025904_24026176_24027038_24027148_24027327_24027490_24028939_24029020_24029385_24029448_24029710_24029744_24030002_24030055_24030611_24030705_24030789_24031593_24034093_24042877_24042987_24043089_24043183
90128	chr11	-	3214	17	NNC	ENSMUSG00000051378.11	novel	3326	16	NA	NA	18	-307	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	105.920297275829	7	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACAGTGAAGGTGGATGA	3778	False	NA	NA	False	NA	NA	NA	102815896	102796661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815293_102815543_102815808
90129	chr9	+	4086	27	NNC	ENSMUSG00000002820.7	novel	5951	10	NA	NA	-3	10151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	237.972724805763	84	15	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCACCCAGAGGCGCGCG	8631	False	NA	NA	False	NA	NA	NA	21176585	21199219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549_21185544_21186563_21186666_21186734_21186798_21187139_21187274_21187353_21187478_21187680_21187770_21187855_21187930_21190652_21190827_21191458_21191554_21191656_21191785_21192336_21192466_21192957_21193038_21193112_21193208_21193344_21193394_21193468_21193527_21196537_21196658_21198989_21199071_21199157
90130	chr3	-	6310	3	NIC	ENSMUSG00000001017.16	novel	2411	4	NA	NA	-3	192	intron_retention	FALSE	canonical	3	677	junction_1	471.5	44	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCCAGGGCTACACCAGC	NA	False	NA	NA	False	NA	NA	NA	90416772	90406070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_90410587_90413414_90414934_90416497
90131	chr18	+	5481	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	154	intron_retention	FALSE	canonical	3	706	junction_12	196.592570787629	135	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTACTATACATTCTTG	6432	False	NA	-90	True	NA	NA	NA	77126250	77241186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756
90132	chr9	-	4481	27	NNC	ENSMUSG00000035047.10	novel	2598	19	NA	NA	-1	8079	intron_retention	FALSE	non_canonical	0	0	junction_1	62.3101613945731	23	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCTCCCGGGTCCGGCTCT	NA	False	NA	NA	False	NA	NA	NA	21199253	21176673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21177013_21178032_21178118_21178201_21178377_21179545_21179819_21179895_21179963_21182012_21182145_21183761_21183840_21183928_21184007_21184084_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
90133	chr16	-	4606	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	-10	-1838	-10	1838	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	1399	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATTGGGAATATTTTT	6220	False	NA	NA	False	NA	NA	NA	38370630	38343660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
90134	chr4	-	1103	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-29	-72	29	mono-exon	FALSE	NA	NA	NA	NA	NA	36	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTGAGCAAGAGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	91740978	91739875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739900_91741000
90135	chr1	-	776	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	63	-161	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCATTAATTCAAGCCTA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
90136	chr18	+	1389	10	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	26	-143	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1758.38718892423	1	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTAGTTTGTGTGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	77861717	77870212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866246_77867556_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
90138	chr15	-	3699	2	Antisense	novelGene_ENSMUSG00000037386.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	2125	False	NA	NA	False	NA	NA	NA	39110545	39105322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_39106373_39107896
90139	chr4	+	4891	2	Intergenic	novelGene_1876	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820662	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66821156_66821437
90141	chr8	+	517	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	5	16	5	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	17	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87774321	87774838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_87774300_87774800
90142	chr1	-	489	1	FSM	ENSMUSG00000101249.2	ENSMUST00000187117.2	492	1	70	-67	70	67	mono-exon	FALSE	NA	NA	NA	NA	NA	105	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGATATTAGTAAAATCA	NA	False	NA	NA	False	NA	NA	NA	24655208	24654719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24654700_24655200
90143	chrM	-	960	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3495	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAGGGAGAGGATTTGAA	9986	False	NA	-1	True	NA	NA	NA	3710	2750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2800_3700
90144	chr8	+	1137	1	Genic_Genomic	ENSMUSG00000118487.2	novel	NA	NA	NA	NA	2815	651	mono-exon	FALSE	NA	NA	NA	NA	NA	46	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAAATCCCAACATTTA	NA	False	NA	NA	False	NA	NA	NA	85394888	85396025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_85394900_85396000
90145	chr17	+	4201	6	NIC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	307	intron_retention	FALSE	canonical	3	62	junction_3	772.51599336195	31	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTTTCCTAGGATACACA	NA	False	NA	NA	False	NA	NA	NA	29251646	29262654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29259788_29260180_29260268_29260357
90146	chr15	-	2289	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-135	506	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	20	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCAAGGCTTCACGTCTG	623	False	NA	NA	False	NA	NA	NA	36793898	36770507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771209_36772298_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
90147	chr17	+	3491	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	89	6	10	-6	multi-exon	FALSE	canonical	3	1413	junction_6	319.856779473251	17	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGCAGTGGTGGCGCACGT	509	False	NA	NA	False	NA	NA	NA	56610409	56630480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
90148	chr17	+	1096	4	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1961.09770848426	10	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATAGCTGAATTTTGTT	3039	False	NA	NA	False	NA	NA	NA	35816917	35821664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817249_35820309_35820436_35820877_35821037_35821184
90149	chrM	+	1143	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	10	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	-2	True	NA	87	True	NA	NA	NA	14144	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
90150	chrM	+	867	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-288	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	1	True	NA	NA	False	NA	NA	NA	9878	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_10461_11259
90151	chr4	+	2522	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	124.272084638539	125	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576867	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597468_147597886_147598147_147598898_147599093_147599343_147599761_147599862
90152	chr1	-	3097	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-7	246	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	639.755605192327	6	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAACTTGTCAAATTTTA	NA	False	NA	NA	False	NA	NA	NA	20890491	20872945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884683_20884998_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
90153	chr17	+	4847	3	Intergenic	novelGene_34	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	137	junction_2	2.5	1	96	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGTATGCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	17255437	17261817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17257665_17257906_17257968_17259258
90154	chr14	-	2639	14	NNC	ENSMUSG00000022099.18	novel	4176	15	NA	NA	81	139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	67.7670042417792	286	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTGCTGGGATTAAAGC	NA	False	NA	NA	False	NA	NA	NA	70873337	70840923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70842295_70842407_70842497_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70873259
90155	chr5	-	4225	6	ISM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	31	-1144	31	0	intron_retention	FALSE	canonical	3	934	junction_3	96.8949947107693	10	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	NA	False	NA	NA	NA	100186697	100181435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671
90156	chr17	-	2578	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	68	3	-21	-3	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	5	102	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCTGTGAGGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	36149130	36144815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
90157	chr2	+	1175	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11387	200	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTTTGCTGCAACCC	NA	False	NA	NA	False	NA	NA	NA	11413647	11426231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623_11426117_11426205
90158	chr1	-	3919	1	Intergenic	novelGene_450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	97	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAAGGTTAGGATAATA	NA	False	NA	NA	False	NA	NA	NA	134333212	134329293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_134329300_134333200
90159	chr17	+	1851	4	NNC	ENSMUSG00000023067.15	novel	1913	3	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	584.097214130966	6	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4664	False	NA	NA	False	NA	NA	NA	29312759	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29312836_29317370_29317576_29317620_29317812_29318317
90160	chr1	+	4644	20	FSM	ENSMUSG00000037461.11	ENSMUST00000045450.7	5347	20	129	574	3	368	multi-exon	FALSE	canonical	2	189	junction_14	33.0659544051011	616	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTAGGTCTCTCCACTCT	8322	False	NA	NA	False	NA	NA	NA	191307876	191355226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
90161	chr15	+	2670	8	FSM	ENSMUSG00000009585.19	ENSMUST00000165537.8	2360	8	35	-345	1	338	multi-exon	FALSE	canonical	3	31	junction_4	224.554434107971	118	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAACAAACAAACAA	8286	False	NA	NA	False	NA	NA	NA	79776643	79792975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
90162	chr18	-	3090	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	76	2566	76	1657	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCTTGGAATTGCCTTAC	NA	False	NA	NA	False	NA	NA	NA	24153791	24145324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
90163	chr2	-	2751	5	Antisense	novelGene_ENSMUSG00000027463.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	339	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGGCGCAGTTTCCTGA	NA	False	NA	NA	False	NA	NA	NA	151851254	151838448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_151838569_151845968_151846597_151847449_151847938_151849398_151849525_151849865
90164	chr17	-	2874	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	2	316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.8895179622	111	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCCTGTGTGTATTTT	4828	False	NA	NA	False	NA	NA	NA	25179608	25161127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25161958_25162016_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
90165	chr2	-	4022	18	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	24	4	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_9	440.218520760725	5	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTGTGGTTATGGTA	NA	False	NA	NA	False	NA	NA	NA	103627425	103595358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605844_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
90166	chr16	-	3031	3	Antisense	novelGene_ENSMUSG00000116389.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	240	34	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATCATACAGTCAATCAG	NA	False	NA	NA	False	NA	NA	NA	3169553	3163697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_3165199_3167408_3167469_3168083
90167	chr10	-	4972	2	Intergenic	novelGene_3476	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGACCCGTTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	74555798	74550614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74552947_74553158
90168	chr18	-	4021	12	NNC	ENSMUSG00000006740.15	novel	6032	26	NA	NA	2195	113	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	395.46898615222	464	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATTGGCTTTTTTGTAC	6122	False	NA	NA	False	NA	NA	NA	6220843	6200888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214676_6220801
90170	chr15	-	627	1	ISM	ENSMUSG00000100967.2	ENSMUST00000189185.2	8038	2	2297	6677	2297	-6677	mono-exon	FALSE	NA	NA	NA	NA	NA	2285	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCCTTCTATCCAGCCT	NA	False	NA	NA	False	NA	NA	NA	84801942	84801315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_84801300_84801900
90171	chr12	-	1395	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	76	1	20	-1	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	111638696	111635795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
90172	chr2	+	2972	11	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	1172	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3503.31009332602	109	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTCCTTTTATTCATA	7481	False	NA	NA	False	NA	NA	NA	75489610	75497637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493264_75493972_75494059_75495371_75495495_75495577_75495646_75495741
90173	chr16	-	5839	10	Genic_Genomic	ENSMUSG00000116549.2	novel	232	1	NA	NA	-175	61641	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	95	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGAACCGGCGCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	35652806	35590758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_35590908_35607557_35607744_35621904_35622086_35634284_35634423_35637519_35637691_35639045_35639130_35645055_35645165_35645248_35648966_35649417_35650268_35652552
90174	chr7	+	1537	8	NNC	ENSMUSG00000063229.16	novel	1535	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2882.58672099932	24	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497174_46498447_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
90176	chr2	-	3385	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-25	2	intron_retention	TRUE	non_canonical	0	0	junction_1	4355.96415131025	20	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3711	False	NA	NA	False	NA	NA	NA	154734776	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714096_154714165_154714821_154715468_154715555_154718535_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
90177	chr9	+	6152	21	NNC	ENSMUSG00000032178.15	novel	3549	20	NA	NA	0	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	745.642841781506	13	137	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAATGCCTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	21279166	21316650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21279396_21298995_21299094_21299414_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311314_21311747_21314687_21315355_21315488_21315991
90178	chr8	-	1487	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	95	-1	89	1	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	22	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTCCTAGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	108315001	108307011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
90179	chr7	+	2330	4	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	5	-555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	195.192782198068	355	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAACCATGCCATAGTTT	NA	False	NA	NA	False	NA	NA	NA	42827016	42840978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838947
90180	chr2	-	4338	4	ISM	ENSMUSG00000078880.11	ENSMUST00000108990.9	1628	5	3541	-2788	3541	2788	3prime_fragment	FALSE	canonical	2	5	junction_1	117.927473003066	1078	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	176324570	176311846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_176315941_176317097_176317159_176317363_176317491_176324514
90181	chr11	+	1344	6	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5077	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCGCATGGACCCTCCC	6764	False	NA	NA	False	NA	NA	NA	69807548	69812217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69808164_69808250_69808331_69808425_69808555_69808742_69808850_69809978_69810163_69811988
90182	chr11	-	1658	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	5	330	5	-330	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	134	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915325	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
90183	chr1	+	1368	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	218	0	20	0	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	627	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	NA	False	NA	NA	NA	172327831	172334947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
90184	chr2	-	2890	4	NIC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	102	-124	intron_retention	FALSE	canonical	3	1968	junction_1	239.839298049525	238	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8327	False	NA	NA	False	NA	NA	NA	132095132	132091205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132091616_132091693_132093679_132093822_132093921_132094735
90186	chr4	+	7080	3	NIC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-7	4222	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	77.5	58	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATAGTTGGTGGTCATG	905	False	NA	NA	False	NA	NA	NA	145237339	145269980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_145237496_145257381_145257486_145263160
90187	chr11	+	1734	11	NNC	ENSMUSG00000035198.10	novel	1802	11	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	220.314865590137	66	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1226	False	NA	NA	False	NA	NA	NA	101010759	101017245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014851_101015115_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
90188	chr5	+	1924	10	NIC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	5	-17	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	837.66965114205	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650720	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_45650904_45652507_45652624_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
90189	chr9	+	5175	26	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	11	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	928.28084198695	13	135	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGTGGCTCCGTTA	NA	False	NA	NA	False	NA	NA	NA	72569730	72657128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72650811_72650919_72653688_72653766_72654407
90190	chr10	+	3357	20	NNC	ENSMUSG00000036875.16	novel	4122	21	NA	NA	1	-3395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	67.6358999234042	11	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTTTTCCGAAGGTCCGA	NA	False	NA	NA	False	NA	NA	NA	62782859	62806151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554_62805941_62805982
90191	chr17	+	1380	6	Fusion	ENSMUSG00000067235.15_ENSMUSG00000092253.2	novel	4328	2	NA	NA	126	-98	multi-exon	FALSE	non_canonical	0	0	junction_1	3.91918358845308	34	21	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTATTGTTCATATCCT	NA	False	NA	NA	False	NA	NA	NA	35578090	35785350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_35578261_35752387_35752629_35781722_35781999_35783979_35784256_35784382_35784487_35785037
90192	chrM	-	854	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCGTAGTTGTATGTAC	9986	False	NA	-1	True	NA	NA	NA	3710	2856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2900_3700
90193	chr11	+	7360	40	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	-38722	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.544843471816	1362	19	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTATTCATTGTGTGGTC	3118	False	NA	NA	False	NA	NA	NA	78097849	78146312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78098594_78098873_78099062_78099675_78099847_78099929_78100008_78100251_78100362_78102621_78102748_78102908_78103022_78103493_78103734_78104092_78104287_78107028_78107170_78108664_78108812_78109994_78110141_78110707_78110917_78111946_78112075_78112935_78113109_78113176_78113311_78113594_78113731_78113978_78114056_78115190_78115317_78115428_78115561_78116131_78116326_78116486_78116644_78116771_78116926_78117007_78117140_78117504_78117597_78117713_78117865_78119453_78119598_78119779_78119868_78120220_78120337_78120988_78121096_78121755_78122030_78122598_78122688_78122846_78123040_78123330_78123408_78123500_78123660_78124370_78124510_78136373_78136997_78141246_78141372_78141841_78142039_78145676
90194	chr17	+	3563	6	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-8	-2208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1305.35916896462	8	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGTTTTGAGGAATATT	NA	False	NA	NA	False	NA	NA	NA	13226737	13236813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912_13234842_13234897
90195	chr17	+	1857	2	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTGACCTGGAATGCAGT	1758	False	NA	NA	False	NA	NA	NA	36144935	36146923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36145520_36145650
90196	chr14	-	2252	10	NNC	ENSMUSG00000095195.8	novel	1955	7	NA	NA	-159215	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	1.25707872210942	149	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGTGTATGCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	19056965	18875553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_18883030_18883166_18883322_18883459_18892819_18892971_18896174_18896289_18897480_18897511_19056899
90198	chr4	-	1685	5	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	142	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTTTACTTCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	145178223	145158988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159031_145160314_145160385_145173287_145173339_145176033_145176517_145177184
90199	chr3	-	3211	4	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	118	-1485	118	22	3prime_fragment	FALSE	canonical	3	141	junction_3	77.2801541291309	355	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCATGGAATATTTGTGA	NA	False	NA	NA	False	NA	NA	NA	102074128	102064010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088
90200	chrM	+	474	1	FSM	ENSMUSG00000064346.1	ENSMUST00000082397.1	67	1	-473	66	-473	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	24	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	61	False	NA	38	True	NA	NA	NA	4476	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_4500_5000
90201	chr8	+	4855	6	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-113	-211	multi-exon	FALSE	canonical	0	0	junction_1	519.117173670839	46	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGTAGATGTCTTTTTC	NA	False	NA	NA	False	NA	NA	NA	20697871	20727055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698136_20706294_20706355_20711891_20712098_20717197_20717497_20721120_20721241_20723149
90202	chr2	+	3985	4	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078864.11	novel	1074	3	NA	NA	-19	2789	multi-exon	FALSE	canonical	3	66	junction_1	90.6899479913108	29	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTCCTCCCCAACTTGCT	NA	False	NA	NA	False	NA	NA	NA	177189988	177415054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177190111_177409836_177409964_177410168_177410230_177411379
90203	chr3	-	3910	20	Antisense	novelGene_ENSMUSG00000027820.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAGCAGCTGCAAGACCAG	NA	False	NA	NA	False	NA	NA	NA	63289619	63234142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_63234295_63235203_63235286_63235393_63235490_63235594_63235710_63237070_63237139_63247438_63247572_63249327_63249428_63250915_63251053_63251160_63251255_63252543_63252674_63253473_63253572_63254555_63254637_63256036_63256143_63266326_63266383_63269349_63269471_63272180_63272315_63272415_63272484_63275899_63275994_63276298_63276376_63287651
90204	chr17	+	3716	20	FSM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	32	-365	32	365	multi-exon	FALSE	canonical	2	228	junction_10	32.2850016205651	235	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTTTTTTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	34174817	34186374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
90205	chr7	+	1566	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2831.03902466633	9	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503423_46503531_46504400
90206	chr9	-	3347	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	21	-1369	20	-28	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	1	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGAAAGGTAGGATGGGA	NA	False	NA	NA	False	NA	NA	NA	65792317	65739068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
90208	chr14	+	7250	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	5	-11	combination_of_known_junctions	FALSE	canonical	3	97	junction_7	37.2808177887771	579	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTTTGACTTTGAT	NA	False	NA	NA	False	NA	NA	NA	21531506	21722535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
90209	chr3	+	4068	14	NIC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_2	190.962278254048	180	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTAGTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	157742298	157774124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
90210	chr2	+	8739	31	NNC	ENSMUSG00000039262.17	novel	4837	29	NA	NA	11925	-22	at_least_one_novel_splicesite	TRUE	canonical	3	33	junction_1	102.20644141475	397	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGTATAAAAAAATAAAG	1027	False	NA	NA	False	NA	NA	NA	32053084	32124512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32053380_32072469_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32119274_32119357_32120622
90211	chr1	-	9586	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-42	-8	at_least_one_novel_splicesite	TRUE	canonical	3	176	junction_39	236.698919191074	1077	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTTAGTTTTGTTACTT	7845	False	NA	NA	False	NA	NA	NA	84817074	84698917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84792543_84792691_84816949
90212	chr15	+	832	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	4563.73956312145	3	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTAATCCGGCGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	76788284	76790507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789022_76789237_76790055_76790172_76790320
90213	chr6	-	3279	14	NIC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	0	-6	combination_of_known_junctions	FALSE	canonical	3	49	junction_11	251.613679649939	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGCCTTGGTGAAATCA	5	True	NA	NA	False	NA	NA	NA	30509714	30481232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30508452_30508512_30508664_30508802_30509683
90214	chr4	+	1584	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14336	771	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	16.5	78	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACAAGTTTGCTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	145158973	145178229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145176036_145176425_145177091
90215	chr17	-	1983	12	Fusion	ENSMUSG00000057388.10_ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	-771	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	33	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTGGAAAACGGAAGTCAG	NA	False	NA	NA	False	NA	NA	NA	13143443	13135159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_13135515_13136682_13136771_13136929_13137059_13138239_13138334_13138699_13138829_13139237_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142104_13142297_13142415_13142580_13143145
90216	chr1	-	6410	20	NNC	ENSMUSG00000040225.16	novel	11289	35	NA	NA	-296	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	35.3170052343876	661	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATAATGAGTCTTGGAAC	NA	False	NA	NA	False	NA	NA	NA	162533057	162499363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_162501226_162501667_162501721_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520496_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937
90217	chrX	+	5339	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-4	-8	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_8	208.55452940547	16	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGGCAGTTGGTGAGAGC	NA	False	NA	NA	False	NA	NA	NA	158315710	158376069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158348218_158350362_158350914_158351011_158357940_158358094_158375066
90218	chr13	-	12117	24	Intergenic	novelGene_1382	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	992	61	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGAGAGAGGAGCCGCTC	8382	False	NA	NA	False	NA	NA	NA	55466138	55359734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55359805_55361013_55361130_55361872_55361964_55381707_55381842_55386500_55386672_55393326_55395889_55408154_55408376_55409354_55409625_55411142_55411254_55416258_55416335_55424333_55424448_55425336_55425487_55430469_55430593_55437864_55438067_55438941_55439122_55441368_55441522_55443790_55444004_55446374_55446483_55447499_55447772_55449537_55449657_55450651_55450790_55454744_55454854_55458147_55458352_55459928
90219	chr7	+	2051	12	ISM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	12920	847	-1855	242	3prime_fragment	FALSE	canonical	3	846	junction_2	72.1637256922418	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTGTGGTACTAAACTT	2077	False	NA	NA	False	NA	NA	NA	102103821	102118131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
90220	chr11	-	2450	5	NIC	ENSMUSG00000011254.17	novel	2250	6	NA	NA	-1	-1029	intron_retention	FALSE	canonical	3	110	junction_2	13.8270568090248	31	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTTTGCTGGAGGAGT	6311	False	NA	NA	False	NA	NA	NA	45846311	45838698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_45839156_45841022_45842459_45843561_45843732_45844882_45845060_45846101
90221	chr4	+	4906	3	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	0	4066	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAGAAAAAAAAAAAAAAAA	28	False	NA	NA	False	NA	NA	NA	12232832	12238017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12233527_12233757_12235271_12235318
90222	chr11	-	4522	14	NIC	ENSMUSG00000038909.17	novel	3324	14	NA	NA	-7	1121	combination_of_known_junctions	FALSE	canonical	3	25	junction_13	272.192696274763	6	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATCCTGAATGAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	95200346	95163963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200203
90224	chr2	-	7744	29	NNC	ENSMUSG00000027131.4	novel	983	5	NA	NA	25	78408	intron_retention	FALSE	non_canonical	0	0	junction_1	257.596036678061	21	78	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGGGAGACAGTGGCTG	5029	False	NA	NA	False	NA	NA	NA	112198340	112114947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_112115153_112146587_112146629_112163725_112163821_112164711_112164842_112166117_112166268_112167700_112167756_112168201_112168332_112169587_112169833_112170272_112170344_112172173_112172388_112174170_112174331_112174481_112174583_112174832_112174891_112177243_112177417_112177659_112177781_112179620_112179717_112181616_112181744_112182787_112182892_112183234_112183403_112184515_112184713_112185317_112185495_112186808_112187944_112188116_112188298_112188850_112188985_112190760_112193700_112194136_112194298_112194496_112194581_112197746_112197862_112198163
90225	chr2	-	1295	6	NIC	ENSMUSG00000005233.17	novel	1352	7	NA	NA	-8	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	346.913476244438	9	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTAACTCTCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	69036546	69024237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035369_69035523_69036407
90226	chr15	+	4450	1	Antisense	novelGene_ENSMUSG00000022387.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	283	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTACAAAATCAACCACAC	NA	False	NA	NA	False	NA	NA	NA	88592705	88597155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_88592700_88597200
90227	chr11	+	2406	11	Antisense	novelGene_ENSMUSG00000025130.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAGCCAAGGCGACGAGA	6859	False	NA	NA	False	NA	NA	NA	120451176	120463677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120452086_120452985_120453072_120453187_120453372_120453480_120453602_120454030_120454232_120454428_120454557_120454643_120454747_120458743_120458881_120458998_120459134_120462346_120462556_120463484
90228	chr13	-	1836	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	-130	476	-18	-476	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	853	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTGTCCTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	34314467	34311206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
90229	chr12	-	1808	7	NNC	ENSMUSG00000076432.14	novel	1970	7	NA	NA	40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1272.61319077453	1192	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTATGGCTTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	21467549	21440329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_21440411_21440452_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
90230	chr17	+	886	2	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	42	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	85	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3078	False	NA	NA	False	NA	NA	NA	35816956	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817360_35821184
90231	chr15	+	786	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4466.90096599421	4	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788284	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788620_76788757_76788881_76789017_76789237_76790055_76790172_76790320
90232	chr2	-	1460	5	NIC	ENSMUSG00000072980.4	novel	1082	6	NA	NA	-40	2	combination_of_known_splicesites	FALSE	canonical	3	58	junction_3	272.52247613729	34	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAATTTG	7440	False	NA	NA	False	NA	NA	NA	119448990	119439990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_119440846_119442232_119442337_119443492_119443575_119448334_119448402_119448638
90233	chr3	+	6086	13	Antisense	novelGene_ENSMUSG00000105201.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	158	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTGGCGGTGACGACATC	NA	False	NA	NA	False	NA	NA	NA	157716558	157742223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722090_157723445_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728587_157728878_157732496_157737088_157737285_157742151
90234	chr11	+	3759	13	NNC	ENSMUSG00000041164.16	novel	3806	19	NA	NA	925	997	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	87.1014733897577	472	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTAGACCTGACATACAGA	1108	False	NA	NA	False	NA	NA	NA	6347653	6357155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6347687_6348261_6348340_6348657_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
90235	chr9	-	3706	7	NNC	ENSMUSG00000059820.15	novel	3339	7	NA	NA	15	1298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	48.9855420847145	8879	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCGCTGGGGTGCGCACG	NA	False	NA	NA	False	NA	NA	NA	50528749	50515241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_50515338_50516230_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50528527
90236	chr17	+	191	1	Antisense	novelGene_ENSMUSG00000118642.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	40159529	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_40159500_40159700
90237	chr16	+	4894	8	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	16	758	intron_retention	FALSE	non_canonical	0	0	junction_6	892.475667078117	8	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATGTATATGAGTACAT	6893	False	NA	NA	False	NA	NA	NA	22927347	22933644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22933054_22933194_22933275_22933355
90238	chr13	-	3777	7	Genic_Genomic	ENSMUSG00000114434.2	novel	1508	1	NA	NA	-12537	2760	multi-exon	FALSE	non_canonical	0	0	junction_2	7.43116560320265	61	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGGTTTCTCTCGAGTTA	NA	False	NA	NA	False	NA	NA	NA	66711821	66695016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66695422_66696155_66698805_66699097_66699135_66700323_66700522_66700722_66700807_66702240_66702494_66711670
90239	chr12	+	6076	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	-42	-3344	-42	3240	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	529	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCTAGCGGTGCTTGTTT	3303	False	NA	NA	False	NA	NA	NA	83734883	83785213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
90240	chr6	+	1984	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	46	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	8213	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTTATCTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	122684572	122691590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690507_122690685
90241	chr5	+	1866	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	30	-4	at_least_one_novel_splicesite	FALSE	canonical	3	353	junction_5	2481.0635639103	9	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCTGTGTGGCATTCTT	NA	False	NA	NA	False	NA	NA	NA	108048397	108056867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051590_108052582_108052761_108055054_108055144_108055762
90242	chr4	+	2003	12	NIC	ENSMUSG00000028580.16	novel	4614	18	NA	NA	0	-14205	combination_of_known_splicesites	FALSE	canonical	3	53	junction_3	222.181260228432	2	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGTAAGTTTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	130390676	130493360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231
90243	chr13	+	6390	19	ISM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	79	22	-37	-22	intron_retention	FALSE	canonical	0	0	junction_7	185.015781775969	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTGTTAAAAATAAAATCT	NA	False	NA	NA	False	NA	NA	NA	13612214	13686832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017
90244	chr18	+	8253	12	Antisense	novelGene_ENSMUSG00000065904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	121	156	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAAGAAGGCCAACAATGC	NA	False	NA	NA	False	NA	NA	NA	35070691	35087078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35071449_35071638_35071778_35071985_35072078_35072394_35072493_35073250_35073368_35073892_35073996_35074915_35076347_35079004_35079092_35079548_35079712_35080963_35081070_35081157_35083738_35084498
90245	chr19	+	3256	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	29	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1484	False	NA	NA	False	NA	NA	NA	44282529	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291785_44293566
90248	chr6	+	2435	3	FSM	ENSMUSG00000003031.15	ENSMUST00000003115.9	2393	3	-42	0	-42	0	multi-exon	FALSE	canonical	2	2	junction_2	1.5	345	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGAGTGCAACTGTCC	NA	False	NA	NA	False	NA	NA	NA	134897321	134902476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134898358_134898918_134899047_134901205
90249	chr19	-	2555	13	NIC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	26	-5	intron_retention	FALSE	canonical	3	2912	junction_8	217.993310294911	29	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3789	False	NA	NA	False	NA	NA	NA	7017309	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
90250	chr2	+	7364	7	Antisense	novelGene_ENSMUSG00000082023.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGTTACAAAAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	176739601	177090104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_176740201_176912555_176918447_176918530_176918970_176919054_176919212_176920365_176920426_176920627_176920759_177090017
90251	chr8	+	4484	10	NNC	ENSMUSG00000034807.10	novel	3207	12	NA	NA	1776	1886	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	288.685697773141	483	24	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACAGAGACCAAAAAGTCAA	NA	False	NA	NA	False	NA	NA	NA	72065590	72079441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72065658_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72074541_72075346_72075475_72075733_72075941_72076136
90252	chr7	+	4591	4	Antisense	novelGene_ENSMUSG00000090744.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	128	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGCCCGGAAGCACCCACC	NA	False	NA	NA	False	NA	NA	NA	41192019	41210253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_41196223_41197138_41197196_41197401_41197573_41210093
90253	chr3	-	2538	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	-535	-164	-535	164	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	281	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACAAGAATTTATCTAGT	NA	False	NA	NA	False	NA	NA	NA	113424333	113398948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
90254	chr4	-	2552	8	NNC	ENSMUSG00000041459.16	novel	1904	7	NA	NA	16	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	495.379631789436	6	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATGTGTCTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	148711195	148701324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148702676_148702779_148703077_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
90255	chr2	+	2065	3	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	-10112	1705	multi-exon	FALSE	canonical	2	4	junction_1	65.5	92	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGAGCTTTTTGATGTT	NA	False	NA	NA	False	NA	NA	NA	87346376	87358446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_87346418_87356339_87356560_87356642
90256	chr17	-	821	4	ISM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	4139	4	3601	-1	3prime_fragment	FALSE	canonical	3	461	junction_3	8.33999733546453	29	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACGTGTCCTATTTCTGG	NA	False	NA	NA	False	NA	NA	NA	46987691	46985479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622
90258	chr8	+	3615	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	37	2098	23	-2098	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	3494	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760570	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
90259	chr13	-	1789	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	27	89	27	-89	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	12	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATCTTTCTATCCCTGA	NA	False	NA	NA	False	NA	NA	NA	97334838	97312927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
90260	chr10	-	3991	6	ISM	ENSMUSG00000020063.17	ENSMUST00000105442.3	3740	8	5511	663	3468	-663	3prime_fragment	FALSE	canonical	3	219	junction_4	27.6651405201564	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGATAAATTGTAGCTC	NA	False	NA	NA	False	NA	NA	NA	63169303	63155499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523
90261	chr16	+	2632	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-647	1904	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	116.802777744748	172	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCACCTATCCTGGCT	2217	False	NA	NA	False	NA	NA	NA	93811652	93814999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93814317_93814366
90262	chr11	-	3816	20	NNC	ENSMUSG00000020923.18	novel	4580	20	NA	NA	-64	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	227.579677685181	848	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTTCGTCTGGTCACT	9072	False	NA	NA	False	NA	NA	NA	102207595	102195389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102195831_102196638_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
90263	chr15	-	3773	15	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGAGGCAGTCACGTGAT	3529	False	NA	NA	False	NA	NA	NA	102005604	101982353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982394_101990405_101990548_101992594_101992805_101993113_101993229_101994435_101994491_101994937_101995075_101997050_101997187_101997289_101997469_101998303_101998528_101999829_101999928_102001418_102001633_102002090_102002147_102003104_102003211_102003409_102003552_102003685
90264	chr11	-	1634	4	NNC	ENSMUSG00000016559.15	novel	1993	4	NA	NA	-2	-330	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6290.62116699668	2	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915332	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914362_115914481_115914605_115914707_115914846_115915204
90265	chr15	-	2829	11	NNC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-480	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	344.755797630729	528	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	NA	False	NA	NA	NA	98432625	98416700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782_98431812_98431896
90266	chr1	+	945	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9512.68242342237	54	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTTGTTCTAACAATGG	NA	False	NA	NA	False	NA	NA	NA	86454447	86458405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457217_86457796
90267	chr5	-	2319	15	NNC	ENSMUSG00000036980.14	novel	2308	15	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	246.15230891396	31	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTCCCGCATCACAT	9939	False	NA	NA	False	NA	NA	NA	138185706	138176877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180370_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185652
90268	chr4	-	1828	9	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	68	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	525.999747504692	6	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTGAGGCCAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	137523627	137469056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475101_137482474_137482512_137482940_137483061_137485882_137486044_137523552
90269	chr15	-	4912	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	114	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22701423_22701693_22704561_22704654
90270	chr1	-	701	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	84	-2	84	2	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24652968	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653000
90271	chr2	+	2700	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	11	3	0	-3	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	193	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTTCCAGTGCTTGCTT	4045	False	NA	NA	False	NA	NA	NA	180609037	180624316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
90272	chr9	+	759	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-225	-44	225	mono-exon	FALSE	NA	NA	NA	NA	NA	3244	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCACCTGACACAAACACC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
90274	chr2	+	2965	3	Intergenic	novelGene_2715	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACATTTATGGCACACTAT	NA	False	NA	NA	False	NA	NA	NA	138359191	138367379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_138359400_138359625_138359774_138364770
90275	chr3	+	2561	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	-13	1633	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1786.0104814922	759	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCAGCAATAAATCTTTT	3577	False	NA	NA	False	NA	NA	NA	88486934	88497359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494182_88495230
90276	chrX	-	11998	46	Antisense	novelGene_ENSMUSG00000031010.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1172	20	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCACTAGTCTCAGCAC	NA	False	NA	NA	False	NA	NA	NA	13039567	12937761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_12937969_12938451_12938563_12960160_12960415_12964686_12964833_12966669_12966750_12969564_12969680_12970821_12971041_12973303_12973420_12973902_12974153_12974226_12974366_12976308_12976466_12977328_12977434_12979796_12980004_12980744_12980882_12982860_12982995_12987669_12987755_12989401_12989750_12990806_12990901_12991632_12991844_12994443_12994688_12995215_12995365_12996463_12996584_12997963_12998095_12998306_12998587_13001181_13001307_13002681_13002808_13003844_13004014_13006347_13006456_13006647_13006794_13007943_13008093_13010524_13010748_13011365_13011585_13014181_13014371_13017504_13017690_13020334_13020471_13022230_13022985_13023905_13024036_13024961_13025182_13026010_13026140_13026980_13027177_13027557_13027772_13027859_13027948_13030947_13031102_13031502_13031717_13032863_13032964_13035582
90277	chr2	+	4406	5	NIC	ENSMUSG00000027397.15	novel	3219	10	NA	NA	-1104	-8	intron_retention	FALSE	canonical	3	499	junction_4	37.3965239026303	7	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTTAGAAAAATTTCTC	NA	False	NA	NA	False	NA	NA	NA	129047135	129053521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
90278	chr17	-	2194	9	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	31	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	315.623886136648	29	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050152	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008871_7021440_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
90279	chrM	+	1577	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	39	-71	39	71	mono-exon	FALSE	NA	NA	NA	NA	NA	1660	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-6	True	NA	NA	False	NA	NA	NA	5366	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_6900
90280	chr5	-	7048	16	Genic_Genomic	ENSMUSG00000104535.2	novel	4108	1	NA	NA	-12154	24420	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCCTACCTTTTCAACAT	NA	False	NA	NA	False	NA	NA	NA	8797922	8757240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_8759858_8760175_8760989_8762049_8763347_8764884_8765061_8765737_8765888_8768977_8769078_8769980_8770067_8773156_8773242_8776771_8776975_8782289_8782390_8783595_8783740_8787614_8787771_8788693_8788892_8790407_8790614_8796506_8796654_8797352
90281	chr17	+	3685	12	Antisense	novelGene_ENSMUSG00000024393.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.574959574576069	25	37	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGCTTTGGGGTAGGAG	9092	False	NA	NA	False	NA	NA	NA	35368071	35378812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35368388_35368495_35368576_35368674_35368771_35368884_35369098_35369203_35369312_35369458_35369550_35374642_35376183_35376322_35376540_35376857_35377155_35377367_35377560_35377911_35378389_35378754
90282	chr3	+	1032	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	24	3	-9	-3	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	36	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3581	False	NA	NA	False	NA	NA	NA	88486938	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
90284	chr17	+	4499	14	NNC	ENSMUSG00000037089.12	novel	1906	4	NA	NA	10	4855	intron_retention	FALSE	non_canonical	0	0	junction_4	177.581117392694	54379	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGGGGAGGGGGCGCCATT	NA	False	NA	NA	False	NA	NA	NA	45874899	45883452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234_45879050_45879153_45879491_45879785_45880051_45880163_45880314_45880395_45880753_45881183_45881493_45881591_45881721_45881938_45882103_45882337_45882548_45882692_45882838_45883278
90285	chr2	+	1122	5	NNC	ENSMUSG00000027078.15	novel	1560	4	NA	NA	16	-202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	84.8745397631115	115	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAATCCTCTTGCAAT	NA	False	NA	NA	False	NA	NA	NA	84629193	84640318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348_84639989_84640202
90286	chr7	+	3075	8	NIC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	1	-119	intron_retention	FALSE	canonical	3	417	junction_1	68.1190434579982	1039	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTGTTTCCATCCCATCAC	3086	False	NA	NA	False	NA	NA	NA	44711880	44727515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
90287	chr8	-	4104	6	NIC	ENSMUSG00000001910.6	novel	4344	6	NA	NA	30	-7	combination_of_known_junctions	FALSE	canonical	3	136	junction_5	237.650499683885	705	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAACAGCCCTGCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	85413752	85397114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85403050_85403882_85413676
90288	chr8	-	3062	5	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	805	-16	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	96.3223753859922	12	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATTTTTTTTCAGTC	NA	False	NA	NA	False	NA	NA	NA	43593718	43582859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43592683_43592722
90289	chr9	+	1880	10	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	78	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	61.6044731420626	3	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174198	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108178557_108178623
90290	chr14	-	807	6	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCGACGCGGGCGCTCCC	NA	False	NA	NA	False	NA	NA	NA	76085733	76082772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082897_76083056_76083129_76083640_76083835_76084135_76084240_76084682_76084801_76085538
90291	chr3	-	1264	4	Fusion	ENSMUSG00000103766.6_ENSMUSG00000010538.15	novel	600	2	NA	NA	37	-1611	multi-exon	FALSE	canonical	2	5	junction_1	81.9878039710785	36	5	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAACTCACTTTGTAGAC	NA	False	NA	NA	False	NA	NA	NA	88204269	88191677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_88192623_88194404_88194525_88202697_88202758_88204130
90292	chr2	-	508	3	Intergenic	novelGene_2811	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	35	junction_2	1.5	194	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	170515716	170512873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_170513139_170515342_170515518_170515648
90293	chr17	+	1948	5	NIC	ENSMUSG00000037805.16	novel	949	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	728	junction_3	3251.84442855128	110	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_28547593_28547784_28547860_28547940_28548255_28548347_28549672_28549803
90294	chr17	-	839	6	NNC	ENSMUSG00000095677.3	novel	771	5	NA	NA	-20	155124	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	3075.98107926561	3122	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAGACAGACTCATATTCT	NA	False	NA	NA	False	NA	NA	NA	6923237	6758876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6759007_6916336_6916737_6917085_6917164_6917501_6917626_6920709_6920752_6923172
90295	chr8	+	575	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	-28	2	-28	0	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	3627	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	94905681	94906953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_94905967_94906450_94906517_94906729
90296	chr4	+	2874	10	Fusion	ENSMUSG00000078498.6_ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	2800	4	NA	NA	-35	-8	multi-exon	FALSE	non_canonical	0	0	junction_1	175.989968849939	2	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAAGTTTGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	147390095	147669647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147390233_147447267_147447362_147469676_147469759_147472778_147472906_147578832_147578927_147639766_147639926_147661481_147661587_147665698_147665826_147667290_147667431_147667838
90297	chr18	+	3197	4	Antisense	novelGene_ENSMUSG00000051469.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGGAGGGCCGCAGAGGC	NA	False	NA	NA	False	NA	NA	NA	24145324	24153404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_24147743_24150340_24150487_24150722_24151225_24153273
90298	chr7	+	1821	10	ISM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	15582	845	807	244	3prime_fragment	FALSE	canonical	3	877	junction_3	69.0973548295768	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	4739	False	NA	NA	False	NA	NA	NA	102106483	102118133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
90299	chr17	-	8100	14	Antisense	novelGene_ENSMUSG00000092981.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGGGTTCACATCCTT	NA	False	NA	NA	False	NA	NA	NA	24043558	24027117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_24027148_24027327_24027490_24028939_24029020_24029385_24029448_24029710_24029744_24030002_24030055_24030611_24030704_24031399_24031593_24034093_24040663_24041384_24041509_24041559_24041673_24042762_24042877_24042987_24043089_24043183
90300	chr13	-	2677	3	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-8294	-90	intron_retention	FALSE	canonical	3	49	junction_2	59.5	418	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCCTATCACAGTCATC	NA	False	NA	NA	False	NA	NA	NA	66138899	66124246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66126651_66126851_66126979_66138753
90301	chr2	-	5232	12	NNC	ENSMUSG00000027201.17	novel	2928	15	NA	NA	11	-389	intron_retention	FALSE	canonical	0	0	junction_9	244.471533268216	13	38	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAGTGTTCCCTCTAACT	NA	False	NA	NA	False	NA	NA	NA	124965323	124926936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_124930958_124937627_124937680_124937831_124938041_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957344_124957411_124958584_124958794_124965304
90302	chr3	+	6905	18	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	1601	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	86.7537181477356	396	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGAGCAAAACGTTCCT	NA	False	NA	NA	False	NA	NA	NA	116654816	116701346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116655359_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717_116698142_116698203
90303	chr2	-	421	1	Intergenic	novelGene_2785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATAAGACTAGTGAAGAT	NA	False	NA	NA	False	NA	NA	NA	166839176	166838755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_166838800_166839200
90304	chr4	+	2375	11	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	271.394344082554	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAACTTGGTTTCAAATG	669	False	NA	NA	False	NA	NA	NA	118966000	118994521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118966008_118966106_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990327_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
90305	chr15	+	2871	9	Antisense	novelGene_ENSMUSG00000022195.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGGGAGCTTGGTGTAGC	NA	False	NA	NA	False	NA	NA	NA	12809889	12824576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_12810929_12812016_12812157_12814274_12814343_12815934_12816057_12816404_12816471_12817945_12818370_12821488_12821640_12823646_12823795_12823863
90306	chr9	-	4156	12	NIC	ENSMUSG00000032113.17	novel	3397	13	NA	NA	-16	-155	intron_retention	FALSE	canonical	3	297	junction_11	55.9468460842688	81	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAACAACTGTTTTTTGAA	705	False	NA	NA	False	NA	NA	NA	36637897	36619932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36635317_36637092_36637175_36637858
90307	chr11	+	4310	6	FSM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	-31	-1867	-31	369	multi-exon	FALSE	canonical	3	241	junction_2	26.3469163281019	349	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATGTTATAGTTTACAT	NA	False	NA	NA	False	NA	NA	NA	66943464	66958265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731
90308	chr10	+	2224	4	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	-749	617	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	59.0987873536054	695	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAGAAACTCAGAATATCA	NA	False	NA	NA	False	NA	NA	NA	95728555	95733736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_95729296_95729415_95729523_95729937_95730152_95732573
90309	chr2	-	2932	15	NNC	ENSMUSG00000027201.17	novel	2999	16	NA	NA	-69	108	intron_retention	FALSE	canonical	0	0	junction_12	185.119500841583	567	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTAAATGCTTCCCCTG	NA	False	NA	NA	False	NA	NA	NA	124965403	124929552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957348_124957411_124958584_124958794_124965304
90310	chrM	+	1040	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	104	0	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	11	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATCATTGGCCAACTAG	-2	True	NA	87	True	NA	NA	NA	14144	15184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15200
90311	chr3	+	1089	6	Antisense	novelGene_ENSMUSG00000036513.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCCGGCGCCGGCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	57553797	57559097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_57554298_57556179_57556344_57557462_57557643_57558117_57558194_57558841_57558927_57559013
90312	chr5	+	1934	1	ISM	ENSMUSG00000018604.19	ENSMUST00000121021.8	4777	8	11822	107	2435	56	mono-exon	FALSE	NA	NA	NA	NA	NA	6	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCCAAGAAGGAGTAT	NA	False	NA	NA	False	NA	NA	NA	119820748	119822682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_119820700_119822700
90313	chr2	-	2707	3	NIC	ENSMUSG00000036752.5	novel	1598	4	NA	NA	0	592	intron_retention	FALSE	canonical	3	1343	junction_1	13	20	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAATCAAACCATATTACTA	NA	False	NA	NA	False	NA	NA	NA	25114666	25111579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25114057_25114135_25114245_25114545
90314	chr10	-	1867	13	NNC	ENSMUSG00000061032.10	novel	1984	13	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	355.919573858415	41	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGCACATGGCTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	78248827	78236226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78236696_78236759_78236819_78237683_78237803_78238421_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
90315	chrUn_MU069435v1	+	575	1	Intergenic	novelGene_4744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGGTTTGTCTCTGCGG	NA	False	NA	NA	False	NA	NA	NA	0	575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
90316	chr11	+	2661	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	754.535489924467	20	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	NA	NA	NA	20151433	20176856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20174708_20174871
90317	chr9	-	1504	6	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1227	103	2	-103	3prime_fragment	FALSE	canonical	3	11573	junction_3	1608.66794584837	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTATTAGTTTTCAAAAT	8327	False	NA	NA	False	NA	NA	NA	78387779	78385833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522
90318	chr17	-	2110	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	1	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGCTGTGAGGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	36149124	36144815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36144869_36145330_36146932_36147054_36147166_36147519_36147629_36148888
90319	chr1	-	9550	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9497	-10	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_41	258.943708439484	23	72	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTGGTTAGTTTTGTTAC	NA	False	NA	NA	False	NA	NA	NA	84827734	84698919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84792543_84792691_84827643
90320	chr13	-	4656	7	Fusion	ENSMUSG00000113204.2_ENSMUSG00000069208.10	novel	1549	5	NA	NA	-54	2934	multi-exon	FALSE	canonical	0	0	junction_6	30.3667398462345	430	34	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAAGGAAGCTGATGGCA	4914	False	NA	NA	False	NA	NA	NA	74765733	74625238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968_74642054_74642157_74642304_74765651
90321	chr1	-	572	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	109	-3	109	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653623	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653600
90322	chrM	-	491	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAACCTTTGTGTTTATG	4	True	NA	NA	False	NA	NA	NA	571	80	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_100_600
90323	chr12	-	2647	3	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_1	8.5	55391	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAATTAAAGCATTATTATT	NA	False	NA	NA	False	NA	NA	NA	86516795	86487253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86489337_86508048_86508306_86516488
90324	chr2	+	6040	8	Antisense	novelGene_ENSMUSG00000078865.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	511	41	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTACAGAGAGGAACTTG	NA	False	NA	NA	False	NA	NA	NA	177255289	177275487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177258934_177259857_177261386_177261468_177261792_177261875_177262086_177263225_177263286_177263477_177263606_177266760_177266817_177275396
90325	chr1	-	9035	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-21420	-463	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_39	288.564571968081	2	43	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAAGGTGTTACATAGGG	NA	False	NA	NA	False	NA	NA	NA	84792692	84699372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771491_84772049_84773410_84773537_84792543
90327	chr5	+	2666	19	ISM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	34485	1968	-1173	1898	3prime_fragment	FALSE	canonical	3	795	junction_7	132.0499928712	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGAAGGTCCGAACTGT	NA	False	NA	NA	False	NA	NA	NA	75770060	75815414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
90328	chr17	+	1750	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	98	1	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
90329	chr13	+	5421	6	Antisense	novelGene_ENSMUSG00000114814.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	83.6	41	65	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCCTATGATTGTAATA	NA	False	NA	NA	False	NA	NA	NA	66577882	66785350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66580290_66581477_66581539_66581738_66581866_66589267_66589495_66782550_66782678_66782878
90330	chr5	+	2119	12	Fusion	ENSMUSG00000063646.19_ENSMUSG00000113373.2	novel	516	2	NA	NA	2843	0	multi-exon	FALSE	canonical	3	9	junction_1	48.7096304561383	277	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	3224	False	NA	NA	False	NA	NA	NA	37245556	37282643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_37245675_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
90331	chr4	-	8647	5	Antisense	novelGene_ENSMUSG00000104526.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	184	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCAAGACCGTTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	42231660	41877211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_41880030_41880338_41880988_42207622_42207630_42226364_42230888_42231010
90332	chr3	+	2448	20	NNC	ENSMUSG00000028034.16	novel	2374	20	NA	NA	4	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	411.044288614032	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACCTCCTGTGTCGGTAA	NA	False	NA	NA	False	NA	NA	NA	151916138	151938400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916403_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
90333	chr4	-	5224	24	Antisense	novelGene_ENSMUSG00000092862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	0.407862239984646	198	24	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGTCCCGGATTTCCGGC	6912	False	NA	NA	False	NA	NA	NA	41026759	40970977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40971063_40976356_40977341_40984890_40985043_40986683_40986770_40988620_40988726_40990787_40990863_40991741_40991883_40993757_40993859_40993962_40994179_40996812_40996925_41003010_41003097_41004326_41004437_41004825_41004943_41009186_41009268_41015200_41015432_41016074_41016149_41017969_41018072_41018445_41018490_41021748_41021845_41022256_41022324_41023610_41023758_41024471_41024579_41024800_41025215_41025268
90334	chr5	-	5082	15	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23530	45593	intron_retention	FALSE	non_canonical	0	0	junction_1	0	54	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCCTCAAGGCGAGCTAC	NA	False	NA	NA	False	NA	NA	NA	108256866	108208638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108247519_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452
90335	chr11	-	370	4	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-12	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6178.00976582804	43	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGTCTTCTTGACACC	NA	False	NA	NA	False	NA	NA	NA	97673220	97668860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97668991_97672183_97672289_97672631_97672716_97673169
90336	chrM	+	2051	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	322	-791	322	791	mono-exon	FALSE	NA	NA	NA	NA	NA	69	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATCTTCCTAGGACCCC	1	True	NA	-44	True	NA	NA	NA	1415	3466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1400_3500
90337	chr14	-	5464	17	NNC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	1	20296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2049.60037263365	908	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGAGATTTCCTTCCGCGC	NA	False	NA	NA	False	NA	NA	NA	31923825	31881822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31881966_31892702_31892858_31894257_31894400_31894562_31894651_31894843_31894955_31895357_31895446_31896344_31896489_31897893_31898910_31899186_31899329_31899777_31902337_31902385_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
90339	chr13	-	5265	8	Antisense	novelGene_ENSMUSG00000114016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTGAGTCGGCTCGCT	NA	False	NA	NA	False	NA	NA	NA	65447984	65426646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65426800_65427072_65427155_65428075_65428201_65432732_65432829_65439634_65440119_65442208_65442297_65443411_65443540_65443875
90340	chr2	-	5705	10	Antisense	novelGene_ENSMUSG00000099091.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.314269680527354	25	98	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTTCAGACTGACAGG	5838	False	NA	NA	False	NA	NA	NA	162926606	162904228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162904467_162906196_162906419_162910073_162910235_162914541_162916722_162917552_162917696_162919706_162919807_162921511_162922098_162922341_162922742_162924468_162924618_162925080
90341	chr9	-	3427	9	NIC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	0	-96	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	168.766851010499	18	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTTTAAAAAATGTTTTA	NA	False	NA	NA	False	NA	NA	NA	75466939	75405084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_75407433_75412121_75412267_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
90342	chr19	+	2060	3	FSM	ENSMUSG00000024661.8	ENSMUST00000237316.2	2062	3	-3	5	-3	-5	multi-exon	FALSE	canonical	3	5325	junction_1	204.5	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCAGCTTCTTTTCTTTG	4924	False	NA	NA	False	NA	NA	NA	9960064	9962451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9961692_9961923_9962050_9962144
90343	chr18	+	3880	11	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	-124	256	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	789.986556847647	277	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTAGAATGAGCCATGAA	304	False	NA	NA	False	NA	NA	NA	61688220	61723388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709662_61710253_61710324_61711737_61711845_61713409_61713559_61720496_61721665_61722283
90344	chr2	+	6044	3	FSM	ENSMUSG00000027324.2	ENSMUST00000028796.2	2706	3	8	-3346	8	3346	multi-exon	FALSE	canonical	3	106	junction_2	2.5	525	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACAATACCTACCTGCTT	3263	False	NA	NA	False	NA	NA	NA	118865278	118873596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_118865950_118867398_118867696_118868520
90345	chr4	+	3123	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	3327	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	40.5534626552818	35	45	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTTGTGTGTGGGTTTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147601270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147596801_147597378_147597462_147597630_147597965_147598100_147599018_147599704_147599905
90347	chr10	-	2511	11	NIC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	0	-226	intron_retention	FALSE	canonical	3	625	junction_10	436.173233933491	3	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTAAGCGCCCTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	127358270	127353233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356976_127358156
90348	chr15	-	1250	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	40	5	-29	-5	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTGTGTGTATTTA	NA	False	NA	NA	False	NA	NA	NA	51728879	51649958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
90349	chr16	+	4193	8	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-12	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1858.65795340485	56	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGGTCTATGAATTATT	NA	False	NA	NA	False	NA	NA	NA	84570998	84622820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84612056_84612157_84613153_84613285_84618147_84618191_84619674
90350	chr13	-	4756	6	NNC	ENSMUSG00000113047.2	novel	704	5	NA	NA	34	3766	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_5	25.8874486962312	145	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTGTGATCATTTTA	NA	False	NA	NA	False	NA	NA	NA	74712341	74698262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857_74711944_74712046_74712177_74712256
90351	chr15	+	566	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	510	-74	-510	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTGGCATTGTGGAAGG	88	False	NA	NA	False	NA	NA	NA	12574900	12575466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12575500
90352	SIRV1	-	2003	8	NNC	SIRV1A	novel	1363	6	NA	NA	37	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2570.49765689091	1017	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCGATGCATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	11606	1001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10344_10479_10792_10897_11194_11406
90353	chr7	+	1584	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	0	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	4	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
90354	chr6	-	7861	36	NNC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	-64636	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	121.808937040174	242	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120405971	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120341034_120341738_120343528_120343607_120345890_120346014_120351775_120351948_120358494_120358629_120359875_120359981_120362579_120362675_120364970_120365128_120365888_120366011_120366513_120366671_120367612_120367796_120371046_120371211_120375898_120376021_120379467_120379661_120381924_120382112_120382824_120382944_120383533_120383684_120385202_120385319_120389113_120389470_120392174_120392313_120395516_120395697_120396357_120396521_120403772_120404325_120404687_120404832_120405176
90355	chr13	-	2712	5	NNC	ENSMUSG00000114172.2	novel	1732	3	NA	NA	-9960	3524	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	35.7875676737048	91	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCTCATCAGAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	62801026	62784175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62785498_62788153_62789246_62790689_62790751_62790936_62791064_62800916
90356	chr4	-	3705	7	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	-67	-34	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	334	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAGTTGAATAAAAGGTTT	NA	False	NA	NA	False	NA	NA	NA	148711543	148699956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
90357	chr14	+	1427	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	67	428	29	-428	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	17	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAATTTTCTCTATTCC	NA	False	NA	NA	False	NA	NA	NA	4198695	4201445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
90358	chrX	-	8296	35	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	-100703	2557	intron_retention	FALSE	non_canonical	0	0	junction_7	199.910455733107	164	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAATTCTTCAAGACC	NA	False	NA	NA	False	NA	NA	NA	99770877	99663931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491_99670192_99670306_99670423_99677442_99677634_99679287_99679381_99681887_99682055_99682280_99682377_99708340_99708449_99709269_99709453_99713512_99713577_99720892_99721023_99723448_99723511_99723614_99723719_99732661_99732721_99734119_99734304_99738474_99738581_99739603_99739747_99741034_99741147_99747646_99747730_99748393_99748508_99755395_99755554_99755667_99755767_99757481_99757612_99759184_99759362_99759878_99759983_99760934_99761013_99762097_99762276_99768246_99768362_99769730_99769855_99770062
90359	chr8	-	1016	1	Intergenic	novelGene_1712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1157	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTTTGAAATAATTTTAT	NA	False	NA	NA	False	NA	NA	NA	96486701	96485685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_96485700_96486700
90360	chr17	-	5537	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10120	-15128	at_least_one_novel_splicesite	FALSE	canonical	2	55	junction_3	287.388239146977	60	33	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2348	False	NA	NA	False	NA	NA	NA	6744541	6723928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6729753_6734422_6744415
90361	chr4	+	3500	7	Intergenic	novelGene_2032	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_5	29.1471363182656	37	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATTATGTCCATCCGCT	NA	False	NA	NA	False	NA	NA	NA	146223575	146256589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146223715_146240246_146240316_146250678_146250737_146251579_146251707_146253158_146254641_146254712_146255724_146255975
90362	chr4	+	2937	12	Antisense	novelGene_ENSMUSG00000084504.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGCACTGCCATTTTAG	497	False	NA	NA	False	NA	NA	NA	126059152	126095413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_126059328_126060802_126060870_126061262_126061458_126065485_126065674_126067235_126067321_126069127_126069243_126069978_126070150_126071654_126072348_126073701_126074614_126080232_126080387_126088114_126088198_126095314
90363	chr1	-	3908	4	ISM	ENSMUSG00000026558.14	ENSMUST00000195443.6	738	6	2006	-3328	2006	-16	3prime_fragment	FALSE	canonical	3	1001	junction_2	14.2672897060218	9	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCAACTCTTCACTCC	NA	False	NA	NA	False	NA	NA	NA	167062398	167050467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260
90364	chr5	-	3094	20	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGACGGCTCCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	75815105	75767727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75767957_75769927_75770210_75771464_75771602_75775976_75776151_75781503_75781695_75783646_75783765_75797953_75798067_75799622_75799811_75799920_75800009_75801152_75801257_75801355_75801875_75801986_75802096_75806493_75806644_75808404_75808492_75809041_75809173_75810204_75810330_75813209_75813317_75813412_75813517_75813879_75813986_75815073
90365	chr7	+	1514	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	3969.30259129038	1	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495255	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497174_46498396_46498515_46499601_46499735_46500308_46500483_46501300_46501386_46503416_46503531_46504400
90366	chr17	-	2911	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	0	317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.8895179622	33	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTGTGTGTATTTTG	4793	False	NA	NA	False	NA	NA	NA	25179643	25161126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25163118_25163175_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
90367	chrM	-	1013	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGCTCTGCCACCCTA	9986	False	NA	-1	True	NA	NA	NA	3710	2697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
90368	chr2	+	7521	23	FSM	ENSMUSG00000027678.18	ENSMUST00000088095.6	7531	23	0	10	0	-10	multi-exon	FALSE	canonical	3	140	junction_19	38.5042929880864	518	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGCCTCCGCCTCCGCA	NA	False	NA	NA	False	NA	NA	NA	165834556	165915152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910248_165910469_165911124_165911300_165911730_165911873_165912051
90369	chr17	+	1750	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	98	1	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	217	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-24	True	NA	NA	NA	40157244	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
90371	chr15	-	2656	7	NIC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	43	-6	intron_retention	FALSE	canonical	3	1823	junction_4	71.1196175467782	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTTGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	51728807	51649959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51662756_51705863_51706021_51728721
90372	chr14	-	2699	14	NNC	ENSMUSG00000022099.18	novel	4176	15	NA	NA	-16	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	54.765773443168	380	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTAAATCTATTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	70864510	70841117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70842295_70842407_70842497_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
90373	chr11	-	3488	15	FSM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	44	28	-1	-28	multi-exon	FALSE	canonical	3	566	junction_10	130.748239149965	18	96	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTCAATAAAGCATGTTC	NA	False	NA	NA	False	NA	NA	NA	95201028	95165112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
90374	chr11	+	2653	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	-57	-1213	-57	1213	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	379	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGAGGCTTACCAGTGAT	817	False	NA	NA	False	NA	NA	NA	105956829	105965651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
90375	chrX	+	1196	13	NNC	ENSMUSG00000001962.9	novel	1383	13	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	237.306178221769	3	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGTGCCTGCATTATA	311	False	NA	NA	False	NA	NA	NA	73356750	73363740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_73356932_73358282_73358368_73358469_73358570_73359092_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
90376	chr4	-	3606	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	-4	-365	-4	365	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	473	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTTTTATGTGGGTGCT	-32	True	NA	NA	False	NA	NA	NA	59783870	59769271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
90377	chrM	+	2170	3	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	580	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	-4	True	NA	4	True	NA	NA	NA	11741	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13523_13614_13954_14095
90378	chr2	-	7521	17	NIC	ENSMUSG00000027620.17	novel	2120	18	NA	NA	0	1	intron_retention	FALSE	canonical	3	244	junction_14	752.037555162639	23	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATTTTCGTTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	156022069	155989164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156020873_156021096_156021161_156021806
90379	chr11	-	1846	7	NNC	ENSMUSG00000062825.16	novel	1189	7	NA	NA	0	-101	intron_retention	FALSE	canonical	0	0	junction_1	3077.56217104816	288	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTTAAGAAATGACAAATT	NA	False	NA	NA	False	NA	NA	NA	120239321	120236617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238363_120238461_120238702_120238794_120238924_120239250
90380	chr5	-	2897	7	ISM	ENSMUSG00000035266.17	ENSMUST00000133845.8	2969	16	-128	23302	2	-2569	5prime_fragment	FALSE	canonical	3	40	junction_5	11.295279249905	6254	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATTTAATCCTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	100946462	100933614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100934949_100938004_100938103_100939202_100939276_100939642_100939844_100940529_100940709_100944219_100944929_100946159
90381	chr3	+	3913	18	FSM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	25	-8	25	8	multi-exon	FALSE	canonical	3	170	junction_2	13.4755962948483	285	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTACCAAGGAATTTGTTA	NA	False	NA	NA	False	NA	NA	NA	36120152	36147010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979
90382	chr9	+	1895	1	Antisense	novelGene_ENSMUSG00000039952.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTCTCTACCACTTTCT	4013	False	NA	NA	False	NA	NA	NA	108084485	108086380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108084500_108086400
90383	chr2	+	3969	4	Fusion	ENSMUSG00000078886.13_ENSMUSG00000078887.11	novel	1445	4	NA	NA	-12	916	multi-exon	FALSE	canonical	0	0	junction_1	124.587318776832	10	39	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTAGTGATGTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	175661066	175773012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_175661147_175767761_175767889_175768093_175768155_175769311
90384	chr19	+	4638	26	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	354	-3	-29	3	intron_retention	FALSE	canonical	3	2606	junction_4	270.382910702581	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	724	False	NA	NA	False	NA	NA	NA	10583044	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788
90385	chrY	+	2528	7	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	463	5928	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	751.691518436179	94	43	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGGATATGCAGATGT	5525	False	NA	NA	False	NA	NA	NA	90797579	90833662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrY_+_90797682_90798034_90798265_90798302_90798696_90798733_90798808_90802988_90804081_90804157_90804687_90833554
90386	chr17	-	2130	9	NNC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	54.5246503886086	133	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	NA	False	NA	NA	NA	26309282	26300203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26301236_26301849_26302068_26302549_26302629_26302838_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
90387	chr1	+	1090	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8590.17096453848	9	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454443	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686_86458076_86458193
90388	chr8	-	7809	49	NNC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-615	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_31	361.787474422907	3	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATGAAAGAGAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	96534707	96446799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481847_96482687_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96534576
90389	chr8	+	1216	4	Fusion	ENSMUSG00000095762.2_ENSMUSG00000015016.9	novel	1798	5	NA	NA	15557	993	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5392	36	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGGATTTCTCTGTATAG	NA	False	NA	NA	False	NA	NA	NA	123517873	123569804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_123517884_123549534_123549697_123568131_123568978_123569606
90390	chr11	-	2268	3	ISM	ENSMUSG00000058546.9	ENSMUST00000102483.5	560	5	28	5	28	-5	intron_retention	FALSE	canonical	3	10927	junction_1	3963	628	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAATGCTGCTTGTCA	5991	False	NA	NA	False	NA	NA	NA	78074382	78071765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_78071824_78071979_78072050_78072242
90392	chr4	+	4417	6	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	11	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	38.6284868976252	66	80	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147637744	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147661481_147661587_147663196_147663723_147664208_147665826_147667290_147668241_147668576
90393	chr8	+	2750	11	ISM	ENSMUSG00000034807.10	ENSMUST00000047903.10	3207	12	1091	5	918	0	3prime_fragment	FALSE	canonical	3	748	junction_8	70.5963880095859	492	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAAGTCTTTGGGTTTGGT	NA	False	NA	NA	False	NA	NA	NA	72064732	72077550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_72064839_72065553_72065672_72070193_72070329_72070718_72070924_72072295_72072416_72073244_72073322_72073391_72073499_72074407_72074541_72075346_72075475_72075733_72075941_72076136
90394	chr1	-	774	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-213	117	-213	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCTACCATTACATTTAT	NA	False	NA	NA	False	NA	NA	NA	24653945	24653171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653200_24653900
90395	chr8	-	468	3	FSM	ENSMUSG00000090137.9	ENSMUST00000165126.9	387	3	-12	-69	-12	0	multi-exon	FALSE	canonical	3	22365	junction_1	190	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	NA	False	NA	NA	NA	70962285	70960912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70961179_70961945_70962033_70962170
90396	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
90397	chrM	+	2562	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	-11	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACATATAGAAATATGTC	-3	True	NA	22	True	NA	NA	NA	1093	3696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3605_3645
90398	chr15	-	3591	8	ISM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	21	7	-6	-7	intron_retention	FALSE	canonical	3	441	junction_5	16.4701337615227	7	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGAGCCTGGACTCAGA	8940	False	NA	NA	False	NA	NA	NA	75801581	75796538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815
90399	chr19	+	559	5	FSM	ENSMUSG00000038274.14	ENSMUST00000178310.9	613	5	54	0	-44	0	multi-exon	FALSE	canonical	3	11442	junction_1	1294.53167207295	93	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1036	False	NA	NA	False	NA	NA	NA	6107927	6109549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6108032_6108272_6108356_6108457_6108603_6109173_6109230_6109378
90400	chr6	+	1935	10	Antisense	novelGene_ENSMUSG00000099587.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCAGCGCCAGGCGTCGC	NA	False	NA	NA	False	NA	NA	NA	125157372	125168622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_125158140_125160876_125161025_125161191_125161313_125161394_125161526_125162656_125162799_125163061_125163247_125163718_125163776_125164039_125164116_125166725_125166868_125168456
90401	chr11	-	4098	6	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	266	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTCTTTTTCGAGGCAT	NA	False	NA	NA	False	NA	NA	NA	57952860	57942470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57942555_57943402_57943557_57946291_57946436_57947877_57947989_57948085_57948213_57949382
90402	chr12	+	4286	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	-402	122	-402	-122	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	295	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCAAGAGTGTTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	3285101	3291288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
90403	chr7	+	2891	4	Fusion	ENSMUSG00000064194.11_ENSMUSG00000107181.2	novel	1368	3	NA	NA	12	6	multi-exon	FALSE	non_canonical	0	0	junction_3	204.491238606124	20	8	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTAATTATGTATTTT	NA	False	NA	NA	False	NA	NA	NA	42727486	42841539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_42727598_42836593_42836721_42836916_42836978_42838947
90404	chr18	+	5136	22	FSM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	-6	-555	-1	555	multi-exon	FALSE	canonical	3	169	junction_7	93.6872299310541	210	58	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGGAGGCGAAGGCAGAAA	5649	False	NA	NA	False	NA	NA	NA	31937144	32041005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122_32022194_32026042_32026152_32029653_32030090_32035376_32035541_32035634_32035731_32037288_32037505_32039818
90405	chr13	+	9947	3	Intergenic	novelGene_1426	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	877	113	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTCATCAAAAATATATTAA	NA	False	NA	NA	False	NA	NA	NA	65921393	66076162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65925860_66014119_66014338_66070899
90406	chr7	+	531	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	56	519	56	-15	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	42	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGGCCTCCAAAATGTTT	2749	False	NA	NA	False	NA	NA	NA	4795928	4797546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
90407	chr17	+	2760	1	Intergenic	novelGene_202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCAGTTGGGCCCTGGCGT	NA	False	NA	NA	False	NA	NA	NA	40153887	40156647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156600
90408	chrX	-	2799	6	ISM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	9280	14	-168	-14	3prime_fragment	FALSE	canonical	3	1235	junction_1	136.616250863505	3	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGCTACTTTTACAGTTC	NA	False	NA	NA	False	NA	NA	NA	158912129	158905218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460
90409	chrX	-	3161	2	Genic_Genomic	ENSMUSG00000083327.2	novel	2406	1	NA	NA	-271	561	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAATAATAAGAA	NA	False	NA	NA	False	NA	NA	NA	103392111	103388873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_103391612_103391688
90410	chr15	-	3240	12	NIC	ENSMUSG00000016664.17	novel	3083	12	NA	NA	-13	-14	intron_retention	FALSE	canonical	3	37	junction_10	226.521303250812	293	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGACAGTCCCTTTG	7130	False	NA	NA	False	NA	NA	NA	83348784	83260336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83337067_83337167_83348659
90411	chr11	-	4254	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	33	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1107.92524429168	2796	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAACACTGAATGTTTTTA	8169	False	NA	NA	False	NA	NA	NA	50216467	50184788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198493_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
90412	chr14	-	5880	8	Antisense	novelGene_ENSMUSG00000075592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTCCAGCCAGTTCTGT	8435	False	NA	NA	False	NA	NA	NA	56112190	56100620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_56101068_56101188_56102591_56103413_56103545_56103665_56103762_56105474_56105579_56105869_56105971_56107582_56111056_56112064
90413	chr2	-	3407	27	ISM	ENSMUSG00000027546.16	ENSMUST00000109175.9	3729	28	23363	3	1937	-3	3prime_fragment	FALSE	canonical	3	231	junction_21	27.783956249103	377	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGTTGCAGGCTTTTCAT	NA	False	NA	NA	False	NA	NA	NA	168552896	168476360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751
90414	chr17	-	353	4	NNC	ENSMUSG00000052146.17	novel	522	5	NA	NA	-1	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2655.99878681364	13	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTATGTTGTATTGA	NA	False	NA	NA	False	NA	NA	NA	27854215	27849435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_27849459_27853075_27853218_27853299_27853450_27854177
90415	chr19	+	4863	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	17	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	1009.02038576477	348	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1486	False	NA	NA	False	NA	NA	NA	44282531	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44293626_44293790
90416	chr6	-	2481	1	ISM	ENSMUSG00000045962.17	ENSMUST00000159903.2	2934	2	812	0	812	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGTTGTTCTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	119903410	119900929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_119900900_119903400
90417	chr13	+	4007	3	Intergenic	novelGene_1553	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	97	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113855139	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113855523_113855595_113858545_113859703
90418	chr2	-	5029	18	Fusion	ENSMUSG00000014867.10_ENSMUSG00000015790.17	novel	1173	9	NA	NA	-58	-6	intron_retention	FALSE	non_canonical	0	0	junction_8	318.563710064788	2319	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACCATGGCTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	26823453	26803400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268_26806876_26807443_26807541_26808937_26809068_26809203_26809369_26809736_26811431_26811473_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
90419	chr3	+	1063	1	FSM	ENSMUSG00000096544.3	ENSMUST00000178993.3	331	1	-67	-665	-67	665	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTTGTTCTAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124179248	124180311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_124179200_124180300
90420	chrX	+	4512	5	NNC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-5804	-1981	intron_retention	FALSE	non_canonical	0	0	junction_1	0	473	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGACTGCGGCGCGGGA	NA	False	NA	NA	False	NA	NA	NA	8005863	8011934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_8009989_8010084_8010191_8010813_8010919_8011193_8011311_8011875
90421	chr4	+	2982	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-6	0	multi-exon	FALSE	non_canonical	0	0	junction_1	47.136397825884	101	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576867	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577014_147639766_147639872_147641551_147641686_147661481_147661587_147665698_147665826_147667290
90423	chr4	+	3387	10	Antisense	novelGene_ENSMUSG00000028411.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	3.4569664858009	503	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCGGGTGGGGATGGGGG	NA	False	NA	NA	False	NA	NA	NA	40683755	40702901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_40684058_40684226_40685503_40685943_40686714_40688108_40688213_40690968_40691194_40693387_40693449_40694850_40695139_40695378_40695421_40697212_40697354_40702723
90424	chr4	+	1479	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10	novel	2813	7	NA	NA	-9	-3795	multi-exon	FALSE	non_canonical	0	0	junction_1	17.8885438199983	47	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTTATTTCTGCATTTTA	NA	False	NA	NA	False	NA	NA	NA	147216485	147594082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447362_147541451_147541542_147578832_147578927_147580452_147580533_147592042_147592098_147593177
90425	chr4	+	2924	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-2068	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_3	295.700794723315	7	50	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTCTGTATATTTAATTC	NA	False	NA	NA	False	NA	NA	NA	146500227	146552681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500544_146502756_146502850_146508052_146508139_146547961_146548020_146548860_146548988_146550437
90427	chr16	+	3510	3	Antisense	novelGene_ENSMUSG00000005846.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATACAGAAACAAGACCA	2081	False	NA	NA	False	NA	NA	NA	11013611	11017585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_11016824_11017203_11017351_11017434
90428	chr6	+	3284	8	NNC	ENSMUSG00000029993.17	novel	950	8	NA	NA	17	4652	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_7	992.217985430744	6213	50	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAGGCAGATCTCTGAGT	NA	False	NA	NA	False	NA	NA	NA	86986834	87010095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87007579
90429	chr16	+	3066	4	FSM	ENSMUSG00000022679.14	ENSMUST00000143697.8	580	4	3	-2489	3	-10	multi-exon	FALSE	canonical	3	17	junction_2	74.5311269798659	162	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGATGCAGAAC	531	False	NA	NA	False	NA	NA	NA	13758568	13767232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13758888_13762529_13762601_13764392_13764452_13764615
90430	chr17	-	2941	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	24	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.804534841375	16	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2208	False	NA	NA	False	NA	NA	NA	45744639	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730715_45735454_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
90431	chr2	+	3472	7	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	-15	2301	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	125.059652433016	389	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGATATTGGATATTT	NA	False	NA	NA	False	NA	NA	NA	177401065	177414566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379_177412405_177412567
90433	chr5	+	2487	8	NNC	ENSMUSG00000025340.15	novel	739	3	NA	NA	2436	-8	intron_retention	FALSE	canonical	1	2	junction_1	66.8876609224263	106	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTATCTGATTGGTTT	4752	False	NA	NA	False	NA	NA	NA	130218496	130243170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_130218590_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
90434	chr17	+	782	1	Intergenic	novelGene_166	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCGGTCGCCCGCGTGTT	NA	False	NA	NA	False	NA	NA	NA	40153887	40154669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40154700
90435	chr4	+	5381	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	4	2577	multi-exon	FALSE	non_canonical	0	0	junction_4	68.3381985056674	919	82	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAACTTTTCCTGATTTT	NA	False	NA	NA	False	NA	NA	NA	147216498	147420768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147219028_147219122_147224494_147224577_147249797_147249867_147409276_147409335_147413438_147413566_147415724_147416250_147416418_147418612_147418853
90436	chr3	+	3259	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	2221	1	585	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAAGCCCTGAGTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	41510166	41569078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
90437	chr2	-	4757	8	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	66	1281	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	202.244144235503	3	99	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCAATGCACAGCCACATT	NA	False	NA	NA	False	NA	NA	NA	121337080	121321110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121323360_121324011_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330124_121332812_121333351_121336943
90438	chr6	-	1404	1	Intergenic	novelGene_4113	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	441	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGTTGTGAACTCCAAT	NA	False	NA	NA	False	NA	NA	NA	3405056	3403652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_3403700_3405100
90439	chr4	+	5627	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	7	2577	multi-exon	TRUE	non_canonical	0	0	junction_4	61.469504634412	1135	94	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAACTTTTCCTGATTTT	NA	False	NA	NA	False	NA	NA	NA	147216501	147420768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216862_147219028_147219122_147224494_147224577_147249797_147249867_147409276_147409335_147413438_147413566_147415724_147416295_147416463_147418469_147418505
90440	chr9	+	941	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1904.74457313543	18	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956857	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959955_119960141_119960232_119960465
90441	chr11	+	2917	18	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	3500	222	1083	-222	3prime_fragment	FALSE	canonical	3	2354	junction_4	222.055387585416	22	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATATGACGCCAATCTCT	NA	False	NA	NA	False	NA	NA	NA	72335680	72342372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
90442	chrM	+	2074	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-250	0	250	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGATCCCCAAGTCTCTG	-4	True	NA	4	True	NA	NA	NA	11741	13815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13800
90444	chr7	+	1258	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-15	-11	-15	11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396379	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
90445	chr2	-	4372	11	Antisense	novelGene_ENSMUSG00000026718.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	82	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCTCCCAGAAGCTGCAA	NA	False	NA	NA	False	NA	NA	NA	14154234	14120802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_14120884_14122202_14122340_14133348_14133446_14133787_14133981_14135832_14135937_14139170_14139251_14142295_14142370_14142930_14143000_14143764_14143919_14146510_14146687_14151027
90446	chr13	-	10021	23	Intergenic	novelGene_1380	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	724	30	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCCTCCTCCTCCTCACA	NA	False	NA	NA	False	NA	NA	NA	55463272	55359622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55359818_55361018_55361964_55381707_55381842_55386500_55386672_55393326_55395889_55408154_55408280_55409354_55409626_55411142_55411254_55416258_55416335_55424333_55424453_55425342_55425487_55430469_55430593_55437864_55438067_55438941_55439122_55441368_55441522_55443790_55444004_55446374_55446488_55447501_55447772_55449537_55449657_55450651_55450790_55454744_55454854_55458147_55458352_55459928
90447	chrM	+	1668	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-290	0	-290	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-1	True	NA	NA	False	NA	NA	NA	9876	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
90448	chr17	+	3541	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	-63	5	16	-5	multi-exon	FALSE	canonical	3	348	junction_6	505.023262923353	11	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	436	False	NA	NA	False	NA	NA	NA	56610336	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
90449	chrX	-	6079	2	Antisense	novelGene_ENSMUSG00000082629.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	382	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	72351322	72313322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72315297_72347217
90450	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
90451	chr9	+	2109	12	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-26	-1	intron_retention	FALSE	canonical	3	5755	junction_3	199.580054983226	4	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAACTGTGTTGTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	108765755	108778686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
90452	chr11	+	2500	14	ISM	ENSMUSG00000020850.15	ENSMUST00000102510.8	7249	43	14525	3	9099	-1	3prime_fragment	FALSE	canonical	3	463	junction_1	100.715487723863	1	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTGTTTTCTTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	75392170	75400272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399487_75399592_75399796_75399960
90453	chr8	-	1771	3	NNC	ENSMUSG00000051176.7	novel	1744	4	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	54.5	2	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760039	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749570_43753664_43753800_43759873
90454	chr4	-	2724	2	ISM	ENSMUSG00000051557.16	ENSMUST00000150446.8	673	3	19	-1914	-8	-2	intron_retention	FALSE	canonical	3	379	junction_1	0	1	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9125	False	NA	NA	False	NA	NA	NA	155976193	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_155975360_155975508
90455	chr10	-	1980	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	602.950623638001	1	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358270	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127355953_127356206_127356287_127356786_127356985_127358156
90456	chr11	-	1494	5	NIC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	4	0	intron_retention	FALSE	canonical	3	324	junction_4	32.8129166640212	1025	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	NA	False	NA	NA	NA	115503791	115498743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503610
90457	chr19	+	6375	39	Fusion	ENSMUSG00000071647.6_ENSMUSG00000071646.10	novel	3322	22	NA	NA	-15	-9	multi-exon	FALSE	canonical	2	9	junction_26	414.376664501155	957	20	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCTCCAGGCTCAGCTA	2241	False	NA	NA	False	NA	NA	NA	8907241	8929658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_8907317_8908162_8908335_8908407_8908669_8908753_8908868_8910605_8910674_8910786_8910911_8911133_8911305_8911450_8911521_8911605_8911717_8912314_8912411_8913667_8913824_8913982_8914125_8914492_8914645_8914725_8914852_8914926_8915059_8915825_8915894_8916391_8916481_8916551_8916650_8916780_8916869_8917942_8918042_8918266_8918398_8918493_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923669_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
90458	chr11	-	3218	10	NIC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	-2	intron_retention	FALSE	canonical	3	16927	junction_7	1895.24750655715	49	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113075	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33102853_33103985_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
90459	chrM	-	2369	2	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	192	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	1	True	NA	7	True	NA	NA	NA	3702	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2718_2957
90460	chr1	+	5935	21	Antisense	novelGene_ENSMUSG00000098259.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGTCTTGGAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	162499359	162532342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162501225_162501666_162501727_162503179_162503415_162504262_162504386_162504922_162505028_162505578_162505793_162507063_162507171_162507388_162507627_162508328_162508466_162508789_162508903_162509886_162510093_162511625_162511826_162515684_162515785_162518707_162518805_162519943_162520194_162520304_162520493_162523845_162523933_162525001_162525841_162526445_162526601_162529748_162529959_162531936
90461	chr7	+	1118	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	-20	27	multi-exon	FALSE	non_canonical	0	0	junction_1	0	435	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGCTCAGTAGTTAAAAGA	NA	False	NA	NA	False	NA	NA	NA	51396374	51397653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_51396568_51396728
90462	chr15	-	3088	4	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-640	intron_retention	FALSE	canonical	3	23824	junction_1	3386.10910764684	8	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTAGGGTGGCTTTGTG	3572	False	NA	NA	False	NA	NA	NA	79967553	79962635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79963010_79963890_79964754_79965096_79965985_79966590
90463	chr18	-	2600	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	137	8	0	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649586	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
90464	chr14	-	2639	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	31	-354	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1725.1813288127	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAAAAGACCTATTGTT	NA	False	NA	NA	False	NA	NA	NA	36857178	36842402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36842908_36843071_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
90465	chr3	+	4325	29	NNC	ENSMUSG00000105552.2	novel	640	4	NA	NA	-975	30978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	130	27	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCAACGCCGCTGCGCT	NA	False	NA	NA	False	NA	NA	NA	89907446	89959730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89908299_89909124_89909176_89909585_89909784_89910551_89910623_89915565_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935689_89938620_89938678_89941370_89941485_89941961_89942006_89945674_89945773_89946121_89946324_89951006_89951118_89952160_89952238_89955075_89955207_89959611
90466	chr17	+	3625	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	-19	1174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	106.167320772449	1088	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGAAGTCTGTGAATAT	NA	False	NA	NA	False	NA	NA	NA	17341657	17368267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366138_17366389
90467	chr8	+	4841	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-103	-208	multi-exon	FALSE	canonical	3	13	junction_2	471.385988336522	2939	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGATGTCTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	20697881	20727058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712197_20717197_20717497_20721120_20721241_20723149
90469	chr4	+	2339	9	FSM	ENSMUSG00000028645.12	ENSMUST00000174372.3	2241	9	-110	12	0	-12	multi-exon	FALSE	canonical	1	8	junction_4	226.359779996359	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTTAGAAACTTGGTTT	669	False	NA	NA	False	NA	NA	NA	118966000	118994515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
90471	chr2	+	3636	7	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	20	2158	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	95.248213748197	1399	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTAGTGATGTGTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	177190027	177203714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246_177200659_177200742_177201795_177201868
90472	chr9	+	2435	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	-31	-1	-1	1	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	139	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	NA	False	NA	NA	False	NA	NA	NA	54493763	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
90473	chrX	-	7922	26	NNC	ENSMUSG00000031386.15	novel	8262	26	NA	NA	1419	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	107.777444764663	67	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGACTTTTTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	73008538	72986423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72992025_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73008313
90474	chr6	+	2124	13	NNC	ENSMUSG00000038388.15	novel	616	3	NA	NA	13703	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	317.805266633516	18	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTAAGTTTTGATTTAG	NA	False	NA	NA	False	NA	NA	NA	50101542	50175579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_50101710_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
90475	chr4	+	3972	16	NNC	ENSMUSG00000028423.16	novel	3617	16	NA	NA	49	333	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_15	165.086993901868	97	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTCCCAAGTGCTGGAAT	6094	False	NA	NA	False	NA	NA	NA	40970954	41012941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41011455
90476	chr17	-	1241	1	FSM	ENSMUSG00000091549.2	ENSMUST00000167498.2	1165	1	44	-120	44	120	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCATCGTAAAACCTTCAG	NA	False	NA	NA	False	NA	NA	NA	79159341	79158100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_79158100_79159300
90477	chr6	+	4691	1	NIC	ENSMUSG00000030096.9	novel	6186	15	NA	NA	4188	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	563	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACGTCTGGTGTGTTTCG	5134	False	NA	NA	False	NA	NA	NA	91731352	91736043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_91731400_91736000
90478	chr1	-	6692	42	NIC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-42	-40	combination_of_known_junctions	FALSE	canonical	3	154	junction_39	264.060432396011	162	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGGCTGTGTGTATCCA	7845	False	NA	NA	False	NA	NA	NA	84817074	84702024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84773410_84773537_84792543_84792691_84816949
90479	chr15	+	4527	15	Antisense	novelGene_ENSMUSG00000022462.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	351	31	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCAGCTTCCCGAGCGCG	NA	False	NA	NA	False	NA	NA	NA	96585272	96597590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96588109_96588988_96589090_96589178_96589323_96589559_96589687_96590195_96590296_96590398_96590479_96590897_96591055_96591159_96591225_96591440_96591516_96592886_96592976_96593096_96593189_96593315_96593391_96596062_96596146_96596497_96596698_96597287
90480	chr7	+	2936	19	NNC	ENSMUSG00000030978.11	novel	3997	19	NA	NA	-87	238	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	225.518223511543	2	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATTGTGTGGTACTAA	NA	False	NA	NA	False	NA	NA	NA	102091002	102118127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_102091251_102092193_102092283_102095756_102095842_102097023_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
90481	chr11	-	1650	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	-2	345	-2	-345	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	140	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTGTTTATTCAACTAAG	NA	False	NA	NA	False	NA	NA	NA	115915332	115913131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
90482	chr14	+	1861	5	NNC	ENSMUSG00000012405.17	novel	883	4	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6939.58325027519	6	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	False	NA	NA	False	NA	NA	NA	4198739	4201873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_4198839_4199235_4199418_4199652_4199790_4200379_4200585_4200635
90483	chr12	-	3924	33	FSM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	0	808	0	238	multi-exon	TRUE	canonical	3	259	junction_6	33.0300526036517	326	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAATTAAAGGCGTGCAT	NA	False	NA	NA	False	NA	NA	NA	69403939	69358103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
90484	chr4	+	4175	26	Antisense	novelGene_ENSMUSG00000093562.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCAAGAAAGAAGGCATTGT	3136	False	NA	NA	False	NA	NA	NA	41194338	41251672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41195247_41195333_41195528_41195609_41195672_41195744_41195852_41195941_41196042_41196325_41196532_41196727_41196803_41199208_41199266_41199493_41199585_41199714_41199903_41201463_41201534_41202273_41202460_41203533_41203573_41205523_41205740_41206154_41206330_41206837_41207105_41209352_41209570_41211704_41211922_41221538_41221622_41223355_41223459_41226278_41226334_41227197_41227277_41229694_41229849_41233603_41233718_41235518_41235586_41251527
90485	chr17	-	1558	10	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3131	7415	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	32	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCTGCCGGGAAAGCGG	NA	False	NA	NA	False	NA	NA	NA	13143438	13135284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139279_13141482_13141620_13142104_13142297_13142415_13142580_13143145
90486	chr9	+	5191	21	NIC	ENSMUSG00000042557.15	novel	5206	22	NA	NA	3	94	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	51.8689454298041	375	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTACTTGTAATTGTCAA	NA	False	NA	NA	False	NA	NA	NA	56983662	57035744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_56983915_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
90487	chr6	-	3849	6	Antisense	novelGene_ENSMUSG00000043131.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGATCTCGCGAGACCG	6050	False	NA	NA	False	NA	NA	NA	83320224	83303026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_83303250_83306848_83307016_83309435_83309527_83311054_83311190_83315260_83315425_83317155
90488	chr10	-	1760	14	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	5	1	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	660.113725184922	2	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899714	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897929_116898042_116898721_116898788_116898880_116898956_116899610
90489	chr13	-	9339	8	NNC	ENSMUSG00000113559.2	novel	1588	5	NA	NA	-18353	79173	intron_retention	FALSE	non_canonical	0	0	junction_1	58.4294446319662	401	118	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGGCACCCGGAAGATC	NA	False	NA	NA	False	NA	NA	NA	66148958	66044983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66045091_66052246_66052380_66104168_66104224_66117632_66117780_66120587_66126651_66126851_66126979_66144948_66146126_66147428
90490	chr18	+	4595	22	NNC	ENSMUSG00000024400.17	novel	4575	22	NA	NA	-16	105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	110.248163687074	161	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCCAACTCTGTGCTTT	5631	False	NA	NA	False	NA	NA	NA	31937126	32040555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122_32022057_32026014_32026152_32029653_32030090_32035376_32035541_32035634_32035731_32037288_32037505_32039818
90491	chr6	+	2964	2	NNC	ENSMUSG00000030096.9	novel	1553	5	NA	NA	1302	-766	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACACACAACAAAACCCAGA	1586	False	NA	NA	False	NA	NA	NA	91703241	91735281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91703249_91732324
90492	chr3	+	790	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6398.03348693956	7	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCCCGTGGTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	137570354	137572679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571835_137572247
90493	chr5	+	3727	7	NIC	ENSMUSG00000029110.14	novel	3046	8	NA	NA	-7	-1	intron_retention	FALSE	canonical	1	317	junction_4	708.301175740628	13	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATCTTTCATTTATTCAG	NA	False	NA	NA	False	NA	NA	NA	34493753	34510779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506904_34507255_34507416_34508133_34508183_34508574
90494	chr5	-	3092	8	Fusion	ENSMUSG00000029536.9_ENSMUSG00000041697.10	novel	1797	3	NA	NA	20	5935	multi-exon	FALSE	non_canonical	0	0	junction_1	2497.32895677909	290	28	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGCCGACGCCGCGGGCCC	4874	False	NA	NA	False	NA	NA	NA	115487020	115465362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_115465558_115468555_115468716_115470173_115470347_115470632_115472654_115473525_115473630_115478900_115479074_115486623_115486767_115486897
90495	chr16	-	564	1	Intergenic	novelGene_3737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
90496	chr2	-	671	2	Genic_Genomic	ENSMUSG00000087701.5	novel	493	1	NA	NA	-47	210	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAGAAGAAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	51761677	51760927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_51761256_51761334
90497	chr17	-	2125	8	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	11	-238	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	331.418349596065	59	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTTGTGTCTGATTGCA	NA	False	NA	NA	False	NA	NA	NA	7050172	7005677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008922_7022117_7022285_7023246_7023343_7026877_7026962_7050030
90498	chrM	+	2184	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1224	-3	-1224	3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	30	False	NA	10	True	NA	NA	NA	1526	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3700
90499	chrX	+	1204	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	36	0	33	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	5	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059339	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
90500	chr13	+	5038	32	NNC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	3885	17135	intron_retention	FALSE	non_canonical	0	0	junction_13	100.047210499964	6	138	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCGTGCCCGGGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	97278432	97334838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301524_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107_97313409_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
90501	chr7	+	1145	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	98	-11	98	11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396492	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
90502	chr7	+	1727	6	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	257.061393445224	10	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTTTTTTTTTTTTTTTG	637	False	NA	NA	False	NA	NA	NA	4743167	4750515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743239_4744778_4744953_4746245_4746266_4748800_4748938_4749075_4749261_4749375
90503	chr13	-	4642	3	NNC	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-11719	1751	intron_retention	FALSE	canonical	3	63	junction_2	69.5	53	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCCACACCCACCCCCCA	4250	False	NA	NA	False	NA	NA	NA	66901096	66884683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66889043_66889243_66889330_66900899
90504	chr15	-	1559	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-6	intron_retention	FALSE	canonical	3	214	junction_6	10488.1098481805	3377	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	3572	False	NA	NA	False	NA	NA	NA	79967553	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
90505	chr1	-	6776	23	NNC	ENSMUSG00000046836.14	novel	3430	14	NA	NA	-26537	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	61.6922681574703	877	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTACATGTTCGCTGGAT	NA	False	NA	NA	False	NA	NA	NA	183105350	183057923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446_183079171_183085610_183085681_183087356_183087411_183087817_183087875_183094595_183094658_183094911_183095015_183097511_183097636_183099744_183099868_183103136_183103257_183103343
90506	chr4	+	2091	5	Intergenic	novelGene_2047	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	19.880895352071	263	19	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAGTATACAATCCAAACT	2312	False	NA	NA	False	NA	NA	NA	146289370	146387696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289548_146368131_146368209_146375377_146375458_146384326_146384431_146386043
90507	chr8	+	501	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	-21	111	-21	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	28	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCGCAGGTCTAAGACCAA	7096	False	NA	NA	False	NA	NA	NA	19542930	19543431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_19542900_19543400
90508	chrX	+	3527	1	Intergenic	novelGene_4036	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTTTTATTAGAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	116228200	116231727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_116228200_116231700
90509	chr6	-	1826	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	71	-221	-4	221	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	237	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTCACTGTCTTCAGACA	1275	False	NA	NA	False	NA	NA	NA	56900846	56859163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
90510	chrM	-	2004	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2092	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCCAATTTTAAGTTTAG	9986	False	NA	-1	True	NA	NA	NA	3710	1706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1700_3700
90511	chr2	+	12382	24	NNC	ENSMUSG00000033943.16	novel	2110	5	NA	NA	1367	324	intron_retention	TRUE	non_canonical	0	0	junction_1	65.8736833265717	521	106	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTATATATTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	119729152	119798554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119729228_119733086_119734215_119746911_119747855_119750103_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859_119757203_119762191_119762416_119762984_119763168_119763553_119763624_119765629_119766148_119769119_119769268_119771702_119772327_119776652_119776944_119777305_119778775_119781566_119781695_119783355_119783408_119788637_119788845_119790820_119790933_119791206_119791441_119792274_119792452_119794172
90512	chr13	+	3034	4	FSM	ENSMUSG00000074867.5	ENSMUST00000099449.4	2571	4	41	-504	24	504	multi-exon	FALSE	canonical	3	81	junction_1	97.7422915403335	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAATGTCGTAAGCTTG	NA	False	NA	NA	False	NA	NA	NA	62277770	62321737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963
90513	chr9	-	8164	7	NIC	ENSMUSG00000032449.14	novel	5227	7	NA	NA	39	-6	intron_retention	FALSE	canonical	3	669	junction_4	274.76014792704	344	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTATCTTAAGATTTTAT	NA	False	NA	NA	False	NA	NA	NA	96993171	96957623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96975231_96979155_96979234_96982127_96982293_96992963
90514	chrX	+	4034	17	ISM	ENSMUSG00000025265.15	ENSMUST00000026296.8	4001	18	17681	485	-2532	-485	3prime_fragment	FALSE	canonical	3	331	junction_2	39.0827947279874	2	104	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCATGGGTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	149847846	149872032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_149849351_149849705_149849884_149850008_149850448_149851872_149851963_149852637_149852787_149855168_149855326_149855429_149855569_149861954_149862014_149862153_149862301_149862874_149862968_149863112_149863193_149868626_149868658_149869109_149869212_149869515_149869642_149869815_149869978_149870963_149871108_149871598
90515	chr17	+	8823	15	FSM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	38	3	4	-3	multi-exon	FALSE	canonical	3	160	junction_12	24.3951316655515	921	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTAATTGGTCTGTAGT	NA	False	NA	NA	False	NA	NA	NA	24022198	24043707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24030706_24031401_24031595_24034095_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
90516	chr4	-	3666	18	ISM	ENSMUSG00000028431.12	ENSMUST00000030140.3	6160	37	-1233	26780	-1233	6	5prime_fragment	FALSE	canonical	3	245	junction_5	25.2216472080884	1	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTGGGAGCTGGAATTA	NA	False	NA	NA	False	NA	NA	NA	56803564	56776459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_56776796_56776884_56776939_56778958_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
90518	chrM	+	1123	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	20	1	20	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	18	False	NA	107	True	NA	NA	NA	14164	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
90519	chr3	+	2236	17	NNC	ENSMUSG00000033386.11	novel	2377	17	NA	NA	-92	-233	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	132.509846332263	4	49	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCACCTGCAGCACCTACT	NA	False	NA	NA	False	NA	NA	NA	116653020	116696894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116653284_116659837_116659927_116671882_116672106_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695968_116696107_116696578_116696641_116696717
90520	chr7	-	4538	25	Antisense	novelGene_ENSMUSG00000005609.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	179	10	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGGCGGGGCCTCTGGT	NA	False	NA	NA	False	NA	NA	NA	110655584	110627925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_110628387_110629418_110629519_110632896_110633136_110633552_110633671_110634492_110634583_110637590_110637740_110639759_110639868_110642020_110642127_110642228_110642468_110642621_110642711_110642817_110642948_110643040_110643227_110644583_110644671_110645456_110645645_110645720_110645815_110645971_110646118_110648469_110648586_110648714_110648861_110649638_110649711_110650149_110650286_110650654_110650803_110651507_110651664_110652585_110652684_110653016_110653133_110654564
90521	chr6	-	3643	10	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	8	-1	intron_retention	FALSE	canonical	0	0	junction_2	3271.92515912476	55	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGTGCACTGCTACAAC	NA	False	NA	NA	False	NA	NA	NA	51446856	51437912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440474_51441068_51441192_51442154_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51444370_51444407_51446650
90522	chr13	-	1014	10	NIC	ENSMUSG00000069089.9	novel	1159	11	NA	NA	24	-2	combination_of_known_splicesites	FALSE	canonical	3	42	junction_5	228.326006911387	2	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTGATTTATGATTAG	NA	False	NA	NA	False	NA	NA	NA	100867384	100839819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
90523	chr7	+	3889	26	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	233.88532574747	122	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGCATAATTAAGAAAACCC	7239	False	NA	NA	False	NA	NA	NA	109617521	109655799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223_109654345_109655160
90524	chr19	+	4741	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	979	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1476	False	NA	NA	False	NA	NA	NA	44282521	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291957_44292261
90525	chr1	-	1059	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-8	-8	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	1060.96476850082	10	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAGCCTTCACTGCTCAG	1641	False	NA	NA	False	NA	NA	NA	4855941	4846607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4847025_4847747_4847872_4848970_4849022_4852790_4852957_4854173_4854329_4855795
90526	chr7	+	6146	7	Antisense	novelGene_ENSMUSG00000108731.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	146	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATCAGCTAAACACAGGA	NA	False	NA	NA	False	NA	NA	NA	26581978	26711434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_26582114_26582168_26582366_26583009_26583566_26583787_26583944_26584042_26586046_26708167_26708752_26708919
90528	chr9	+	4581	15	Antisense	novelGene_ENSMUSG00002076266.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.257539376818856	579	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGCTACAGGAAATGGT	194	False	NA	NA	False	NA	NA	NA	108480140	108531587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108482355_108482533_108482619_108484489_108484558_108485109_108485252_108485800_108485968_108487095_108487147_108488831_108488950_108490924_108491037_108492225_108492348_108493878_108494026_108494568_108494631_108497253_108497328_108521226_108521568_108522131_108522194_108530771
90529	chr7	+	5850	5	Antisense	novelGene_ENSMUSG00000108731.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	122	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCAGCTAAACACAGGAGC	NA	False	NA	NA	False	NA	NA	NA	26398154	26711436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_26398654_26582067_26582366_26583006_26583246_26584460_26586013_26708174
90530	chr8	-	7983	7	FSM	ENSMUSG00000031758.11	ENSMUST00000109102.4	2411	7	104	-5676	104	5676	multi-exon	FALSE	canonical	3	57	junction_6	26.9670580935745	440	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCCGTTTGTTTGTGTCC	1873	False	NA	NA	False	NA	NA	NA	117459626	117295462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117459536
90531	chrM	+	1620	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-4	-71	-4	71	mono-exon	FALSE	NA	NA	NA	NA	NA	31	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-3	True	NA	NA	False	NA	NA	NA	5323	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
90532	chr5	-	4791	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	19	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	193.002054936927	20	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGAGCTTGGCTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	31337234	31313349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317081_31317309_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31336590
90533	chr2	-	3973	19	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	32	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	439.650650453794	5	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTGGTTATGGTAC	NA	False	NA	NA	False	NA	NA	NA	103627417	103595357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599874_103599942_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
90535	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
90536	chrM	+	741	2	Genic_Genomic	ENSMUSG00000064337.1	novel	955	1	NA	NA	124	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	19	False	NA	15	True	NA	NA	NA	193	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_203_291
90537	chr9	+	3477	7	Fusion	ENSMUSG00000032399.9_ENSMUSG00000032398.8	novel	1538	10	NA	NA	-1	1313	intron_retention	FALSE	canonical	3	17440	junction_1	1287.44354784545	93792	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTTACCCTGGTGCACCA	NA	False	NA	NA	False	NA	NA	NA	64080655	64087261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_64080716_64082105_64082278_64082475_64083005_64083373_64083499_64084222_64084760_64085002_64085300_64085504
90538	chr17	+	1848	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	0	1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGGAGACTGTGGAGGAGC	NA	False	NA	-24	True	NA	NA	NA	40157244	40159092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159100
90539	chr4	-	3877	10	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-54	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	334.996885926193	196	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTTTGAGTGAATGT	2559	False	NA	NA	False	NA	NA	NA	129229096	129200884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203670_129212257_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
90540	chr5	-	8152	6	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	2	118930	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.524594289673	482	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTGGGGTCGCAAGTTT	NA	False	NA	NA	False	NA	NA	NA	105007934	104842104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_104842706_104843160_104844640_104957819_104963302_104964564_104964626_104964862_104964990_105007532
90541	chrM	+	2483	3	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3338_3394_3569_3645
90543	chr4	+	3842	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16638	-868	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	299.080674735095	5115	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGGCCTATGCAATTAT	1856	False	NA	NA	False	NA	NA	NA	146516841	146553881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146533486_146533556_146547961_146548020_146548860_146548988_146550437
90544	chr13	-	1686	10	NIC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	45	-116	combination_of_known_splicesites	FALSE	canonical	3	8	junction_8	235.310564421564	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTATTGCTTTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100867363	100839254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100866965_100867026_100867281
90545	chr5	+	4146	15	NNC	ENSMUSG00000029125.15	novel	3002	11	NA	NA	-59	21711	intron_retention	FALSE	non_canonical	0	0	junction_11	47.3760466472074	379	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGCCGCGGCCGGGGGATC	NA	False	NA	NA	False	NA	NA	NA	38196517	38316820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606_38296219_38302054_38302166_38312953_38313067_38316218_38316375_38316733
90546	chr15	+	1375	13	ISM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	1394	1181	-14	-1	3prime_fragment	FALSE	canonical	3	186	junction_1	128.135561895292	2	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTGGAGCTTTTTCTTT	5601	False	NA	-10	True	NA	NA	NA	102382565	102407315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
90547	chr3	-	764	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	199	-78	-199	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGGACTGCACCAGCTC	NA	False	NA	NA	False	NA	NA	NA	149779257	149778493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778500_149779300
90548	chr2	+	3916	4	ISM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	1103	7	970	-7	3prime_fragment	FALSE	canonical	3	867	junction_3	54.1376845541891	523	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAAAGACTTGTTCTTCA	NA	False	NA	NA	False	NA	NA	NA	162774550	162779034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162775471_162775573_162775783_162776147_162776232_162776331
90549	chr9	-	5342	8	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	1978	903	intron_retention	FALSE	canonical	0	0	junction_4	127.502220869013	4	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATACACACTGTGTTCGGG	4292	False	NA	NA	False	NA	NA	NA	58154928	58124455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137367_58137773_58137912_58140435_58140531_58141635_58142217_58154257
90550	chr14	+	5218	3	Intergenic	novelGene_560	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2618	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGAAATTGCCTTAGCT	NA	False	NA	NA	False	NA	NA	NA	49839815	49846580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_49843317_49844753_49846185_49846294
90551	chr15	-	3271	7	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-1	intron_retention	FALSE	canonical	3	16287	junction_6	5523.20271420688	44	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79964754_79965096_79965985_79966590_79966784_79967524
90552	chr17	-	3619	5	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	-2	1212	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	872.399385316152	1	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCTTGTGTCAGGATGA	4815	False	NA	NA	False	NA	NA	NA	25179621	25160231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25160645_25160724_25163653_25164553_25164603_25174991_25175141_25179541
90553	chr2	-	5112	2	NNC	ENSMUSG00000086563.2	novel	768	3	NA	NA	-32	2815	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10	95	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150548828	150543640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_150547604_150547679
90554	chrX	+	3627	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	-29	473	-29	-473	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	4636	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20529107	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
90555	chr1	+	5396	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	-140	-45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	65.9688562884032	9	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAGACCCCAACAGACTT	8053	False	NA	NA	False	NA	NA	NA	191307607	191355755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276_191353910_191353955
90556	chr2	+	2848	20	NIC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	-10	18	intron_retention	FALSE	canonical	3	666	junction_11	73.1547140542949	1960	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAGAACAGCAGACCTT	NA	False	NA	NA	False	NA	NA	NA	166857219	166876841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392_166876465_166876558
90557	chr1	-	3271	16	NIC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	21	-4	intron_retention	FALSE	canonical	3	2257	junction_10	185.766328727487	107	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTTCATGCTTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	20890463	20873233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_20873879_20875040_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
90558	chr17	+	4839	16	Antisense	novelGene_ENSMUSG00000064853.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	22	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTCCGCGGCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	35373849	35383827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_35374037_35374341_35376183_35376322_35376540_35376857_35377155_35377367_35377560_35377911_35378389_35378754_35378969_35379073_35379169_35379430_35379809_35380003_35380158_35380310_35380451_35380614_35380688_35380781_35380886_35381177_35381359_35381850_35382025_35383712
90559	chr5	-	8856	32	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	53	-15	intron_retention	FALSE	canonical	0	0	junction_3	147.391456384665	17	102	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATTATGTAGAAGTGTG	3111	False	NA	NA	False	NA	NA	NA	65855146	65765127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785466_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084_65795246_65795899_65796006_65801362_65801479_65803675_65803816_65804430_65804480_65805266_65805349_65807735_65807850_65808487_65808640_65809730_65809877_65811347_65811443_65812131_65812248_65813610_65813752_65815689_65815756_65816945_65817077_65821198_65821297_65821770_65821858_65823450_65823655_65854105_65854281_65855092
90560	chr4	+	1273	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-38	-3796	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	49.7482551341139	76	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGTTATTTCTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	147576835	147594081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147593177
90561	chr2	-	2923	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5298	1699	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_3	127.14908135291	100	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTATGTTTCTGTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	176964127	176954747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_176964046
90562	chr15	-	2868	8	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	214	junction_5	10952.1795966998	5	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
90563	chr17	+	3312	18	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	10	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	678.451483324278	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAATAAAATAAAATTCTGG	509	False	NA	NA	False	NA	NA	NA	56610409	56630459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629911_56630044
90564	chr12	-	4246	6	FSM	ENSMUSG00000020659.17	ENSMUST00000101499.10	3900	6	-236	-110	-236	3	multi-exon	FALSE	canonical	3	107	junction_4	37.6542162313864	336	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGCTCGTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	31549851	31534824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544580_31544749_31549521
90566	chr4	+	1304	3	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181874	-3645	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	22	146	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTGGACATTGTAAAATTT	NA	False	NA	NA	False	NA	NA	NA	147394999	147594232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147591995_147592098_147593177
90567	chr11	+	1769	17	ISM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	64	987	-27	720	5prime_fragment	FALSE	canonical	3	862	junction_16	63.0406614813011	3	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCCCTTCCTCTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	115455323	115473824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702
90568	chrX	-	8325	5	Intergenic	novelGene_3897	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	189	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTAGCTGAGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	29808715	29454368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_29454952_29455056_29458953_29803439_29804074_29804486_29807618_29808634
90569	chr12	+	3411	8	NNC	ENSMUSG00000034501.8	novel	4300	11	NA	NA	-29	-11458	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	29.3097462372126	114	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAGGAGGAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	72583127	72615435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_72583314_72588148_72588892_72602210_72602391_72602617_72603133_72603356_72603458_72603574_72603695_72613670_72614035_72614233
90570	chr8	+	5732	3	Intergenic	novelGene_1647	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGGATCAAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	52759647	52766081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_52761053_52761689_52761778_52761842
90571	chr11	-	1625	6	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.799040975458	43	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8246	False	NA	NA	False	NA	NA	NA	102907941	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885707_102885772_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
90572	chrX	-	1598	10	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	3	42	at_least_one_novel_splicesite	FALSE	canonical	1	11	junction_4	144.681856174756	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTACGGTGTTTGTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	156275059	156228649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156244177_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
90573	chr10	-	1616	5	FSM	ENSMUSG00000033318.8	ENSMUST00000038257.7	1370	5	122	-368	122	-363	multi-exon	FALSE	canonical	3	39	junction_1	6.29980158417708	150	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAGTAACACACCCAAA	NA	False	NA	NA	False	NA	NA	NA	75670593	75667310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008
90574	chrM	+	1536	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	76	-67	76	67	mono-exon	FALSE	NA	NA	NA	NA	NA	24	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGATATTAGTAAAATCA	-3	True	NA	NA	False	NA	NA	NA	5403	6939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_6900
90575	chr10	-	2641	11	NIC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-260	2	combination_of_known_splicesites	FALSE	canonical	1	4	junction_9	618.267587699695	3	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGTGTTCTCTTTGTG	8432	False	NA	NA	False	NA	NA	NA	128402116	128393632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399445_128399575_128401608
90577	chr11	+	4756	20	FSM	ENSMUSG00000041164.16	ENSMUST00000109787.8	4116	20	-1	-639	-1	639	multi-exon	FALSE	canonical	3	65	junction_1	72.0482679083075	604	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGGTACCTGCGGTCTG	4622	False	NA	NA	False	NA	NA	NA	6339072	6356797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6339141_6345124_6345289_6345567_6345679_6345757_6345873_6346231_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
90578	chrM	+	291	1	FSM	ENSMUSG00000064342.1	ENSMUST00000082393.1	69	1	-286	64	-286	-64	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	37	False	NA	-90	True	NA	NA	NA	3419	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3400_3700
90579	chrM	-	883	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	9	-823	9	823	mono-exon	FALSE	NA	NA	NA	NA	NA	28	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCCCAAAGAATCAGAACAG	9259	False	NA	NA	False	NA	NA	NA	6929	6046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_6000_6900
90580	chr15	-	7497	2	NIC	ENSMUSG00000041935.11	novel	767	5	NA	NA	1668	-30	intron_retention	FALSE	canonical	3	219	junction_1	0	3	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACTTAATAAAATAAAACGA	7514	False	NA	NA	False	NA	NA	NA	4019892	4011546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_4018188_4019036
90581	chr12	-	1143	3	NIC	ENSMUSG00000021248.10	novel	1482	5	NA	NA	-9	-5	combination_of_known_splicesites	FALSE	canonical	1	33	junction_2	657.5	28	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTGAAGTCCTTGTGTA	8612	False	NA	NA	False	NA	NA	NA	85421473	85389566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_85390324_85390998_85391126_85421214
90582	chr6	-	1696	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	52	907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	1513	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGCCGGAGCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	87827952	87818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
90583	chr1	+	2068	8	Antisense	novelGene_ENSMUSG00000102982.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1055	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGACGTCAGGCCCGGCG	NA	False	NA	NA	False	NA	NA	NA	13695080	13730763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13695266_13696158_13697129_13697579_13697661_13700287_13700437_13708453_13708638_13717611_13717736_13720944_13721108_13730551
90584	chr14	+	2825	7	NNC	ENSMUSG00000021877.13	novel	2165	6	NA	NA	60	852	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	844.203256857547	4	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCAAATGTCAGCACAAG	1746	False	NA	NA	False	NA	NA	NA	26359288	26379265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359516_26359581_26359642_26367813_26367895_26368068_26368179_26374260_26374301_26375025_26375118_26377050
90585	chr8	-	3086	6	NNC	ENSMUSG00000001910.6	novel	4344	6	NA	NA	437	349	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	241.916183832335	12	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCCAAGCCCTGCCCCT	4830	False	NA	NA	False	NA	NA	NA	85403187	85396758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85398213_85398897_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969
90586	chr8	-	1512	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	3	-166	3	166	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	219	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCACACCCAGCTAACCAA	NA	False	NA	NA	False	NA	NA	NA	23727672	23716465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
90587	chr7	+	1124	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	119	-11	119	11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396513	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
90588	chr10	-	2368	2	Intergenic	novelGene_3478	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCAAGACCCGTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	74555798	74550617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74552104_74554916
90589	chr11	+	5012	9	FSM	ENSMUSG00000039850.17	ENSMUST00000106244.9	5070	9	54	4	12	-4	multi-exon	FALSE	canonical	3	23	junction_1	7.28010988928052	279	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAGAAAGA	6308	False	NA	NA	False	NA	NA	NA	119382226	119402245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_119382286_119382610_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
90590	chr15	+	4080	14	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	-31	8	-31	-8	intron_retention	FALSE	canonical	3	620	junction_1	90.4160010973604	153	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	NA	False	NA	NA	NA	101982176	102005600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411
90591	chr2	+	2707	17	ISM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	21408	13	-63	-13	3prime_fragment	FALSE	canonical	3	726	junction_4	69.7737134868856	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAACTCAGAATGGTGGT	NA	False	NA	NA	False	NA	NA	NA	166769386	166788296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
90592	chr11	-	1772	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	28	0	28	0	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	76	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1875	False	NA	NA	False	NA	NA	NA	59119068	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
90593	chrM	+	1004	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	75	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	140	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	73	False	NA	-48	True	NA	NA	NA	14219	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14459_14523
90594	chr2	-	1644	11	NNC	ENSMUSG00000027170.13	novel	1283	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	657.305225903461	109	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2677	False	NA	NA	False	NA	NA	NA	104847388	104830000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104836702_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
90595	chr2	+	3194	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	-492	-112	-492	76	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	3	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCAGCACTCTGGAGACC	NA	False	NA	NA	False	NA	NA	NA	151841292	151851254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
90596	chr16	+	3435	7	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_3	625.458676137405	3	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22930647_22931100
90597	chr5	+	317	1	Intergenic	novelGene_906	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1280	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATTCAACCCGGCGGCG	NA	False	NA	NA	False	NA	NA	NA	146197788	146198105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
90598	chr2	-	3791	10	Intergenic	novelGene_2694	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTGCTGCAGAGCAT	NA	False	NA	NA	False	NA	NA	NA	119762410	119702986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_119703072_119733085_119734213_119746909_119747853_119750104_119750184_119750290_119750387_119751844_119751978_119752217_119752328_119753911_119754563_119756854_119757203_119762191
90599	chr1	-	5129	22	NIC	ENSMUSG00000026516.9	novel	9392	23	NA	NA	54	-169	intron_retention	FALSE	canonical	3	480	junction_17	72.5892678986292	60	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGTAACAGATATCTATTA	NA	False	NA	NA	False	NA	NA	NA	180971715	180920992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_180921475_180922548_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
90600	chrM	+	949	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	6	2	6	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATATGTCTGATAAAAG	4	True	NA	115	True	NA	NA	NA	2756	3705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
90601	chr17	-	7658	8	NNC	ENSMUSG00000062078.16	novel	8547	8	NA	NA	580	-266	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_3	389.553590665007	641	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATCACTGTCATTCA	NA	False	NA	NA	False	NA	NA	NA	10537710	10421795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_10428561_10432287_10432363_10435088_10435365_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660
90602	chr7	+	1487	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	474	12	9	-12	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAACAGTGATGGCTCT	NA	False	NA	NA	False	NA	NA	NA	46497028	46505038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
90603	chr7	-	1028	5	NIC	ENSMUSG00000006095.13	novel	1416	6	NA	NA	503	-4	intron_retention	FALSE	canonical	3	839	junction_3	28.6400069832394	14	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAAGGTTGTGCAAGTC	NA	False	NA	NA	False	NA	NA	NA	29931194	29923565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
90604	chr13	+	4028	12	NNC	ENSMUSG00000021500.18	novel	4056	16	NA	NA	-9347	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	144.663759476191	3	54	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCGGCATTGTCTCAGATT	NA	False	NA	NA	False	NA	NA	NA	55808229	55829063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55808283_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
90605	chr6	-	1320	7	NNC	ENSMUSG00000057666.19	novel	1273	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	4043.00748893142	16718	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	NA	False	NA	NA	NA	125142568	125138815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142447
90606	chr17	-	797	2	Genic_Genomic	ENSMUSG00000058542.4	novel	552	1	NA	NA	-208	162	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	6182888	6181966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_6182591_6182715
90607	chr1	-	9416	16	Antisense	novelGene_ENSMUSG00000088363.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2267	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGGCTGCGGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	118612892	118555675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_118555832_118559970_118560121_118565325_118565482_118580030_118580106_118580596_118580703_118581443_118581550_118584094_118584249_118586735_118586847_118589707_118589800_118592486_118592538_118592627_118592717_118593840_118593935_118596358_118596464_118597117_118597260_118603302_118603355_118605115
90608	chr4	+	1681	5	FSM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	48	20	-5	-20	multi-exon	FALSE	canonical	3	162	junction_3	305.166348079207	67	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTGACCTTTAAAAGACA	NA	False	NA	NA	False	NA	NA	NA	134650950	134654962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134654045_134654130_134654241
90610	chr6	+	586	2	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	72	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTCTGGTTGCATATGT	NA	False	NA	NA	False	NA	NA	NA	148256279	148257093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_148256707_148256934
90611	chr2	+	2585	18	NNC	ENSMUSG00000027642.16	novel	1944	17	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	857.334724859449	25	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTCTTCTGTGATAAAAT	NA	False	NA	NA	False	NA	NA	NA	157120977	157168241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121034_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157165142_157165191_157167630
90612	chr18	-	3544	23	ISM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	363	5	363	-5	3prime_fragment	FALSE	canonical	3	125	junction_9	28.0317116763164	284	7	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTAGTGGTCTGGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	34139609	33929384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037
90613	chr1	-	1431	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	783	1	NA	NA	-161	2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24653346_24653540
90614	chr15	+	1831	4	NIC	ENSMUSG00000003970.10	novel	1020	5	NA	NA	0	-8	intron_retention	FALSE	canonical	3	10804	junction_2	317.461108729173	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788301	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788651_76788738_76788881_76789017_76790172_76790320
90615	chr16	+	920	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-547	1914	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	116	97	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCTGGCTCCGCGTGATT	2317	False	NA	NA	False	NA	NA	NA	93811752	93815009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93811971_93812291_93812394_93814409
90616	chr7	+	1193	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	-20	11	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396374	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_51397401_51397470
90617	chr16	+	4878	20	NNC	ENSMUSG00000005899.15	novel	4623	20	NA	NA	-958	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	63.6676359466567	430	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCATCTCCCTGTTTTGG	NA	False	NA	NA	False	NA	NA	NA	17436259	17462692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_17436509_17437124_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
90618	chrX	-	2890	21	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	25	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAAACAGACCCCAGGT	NA	False	NA	NA	False	NA	NA	NA	20548935	20536439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20536548_20536780_20536871_20536976_20537109_20537589_20537694_20537927_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
90619	chr16	-	1318	8	NNC	ENSMUSG00000033809.16	novel	1308	8	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	136.842975705734	69	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGCAGCATACATAAAGT	NA	False	NA	NA	False	NA	NA	NA	20429503	20424218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20424468_20424611_20424755_20425273_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429292
90621	chr4	+	3438	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-135092	3413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	177.501408445116	12	72	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146451391	146627265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146452350_146564217_146564431_146614965_146616611_146619877_146620005_146626770
90622	chrM	+	627	2	Genic_Genomic	ENSMUSG00000064341.1	novel	957	1	NA	NA	72	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	70	False	NA	-80	True	NA	NA	NA	2822	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2854_3114
90623	chrM	-	1038	1	Antisense	novelGene_ENSMUSG00000064346.1_AS_novelGene_ENSMUSG00000064345.1_AS_novelGene_ENSMUSG00000064344.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTACGGGAAGGATTTAAAC	9980	False	NA	67	True	NA	NA	NA	4950	3912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_3900_5000
90624	chr13	-	8689	3	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	238	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGGCATATCTGAATTAC	NA	False	NA	NA	False	NA	NA	NA	23510649	23354330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23361407_23419186_23419200_23509049
90625	chr8	-	444	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-6	11	-6	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	108166217	108165773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
90626	chr11	-	2844	4	Intergenic	novelGene_2542	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	134	junction_1	27.2070252365491	3	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCTTTCCAGGCTAGA	NA	False	NA	NA	False	NA	NA	NA	121816171	121795116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121797657_121798775_121798837_121799014_121799142_121816055
90627	chrX	-	2205	5	NNC	ENSMUSG00000015290.16	novel	2442	4	NA	NA	-19	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	734.211992547112	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAATGCTGTCTCTTAT	NA	False	NA	NA	False	NA	NA	NA	73412138	73409349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_73410426_73410495_73411193_73411306_73411516_73411758_73411865_73412021
90628	chr2	+	2701	8	Fusion	ENSMUSG00000059005.14_ENSMUSG00000093242.4	novel	1140	10	NA	NA	14	1172	multi-exon	FALSE	canonical	0	0	junction_7	3834.94859077375	77	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTCCTTTTATTCATA	7508	False	NA	NA	False	NA	NA	NA	75489637	75497637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493264_75495774
90629	chr7	-	4441	23	NIC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	5288	-1	intron_retention	FALSE	canonical	3	309	junction_20	106.039755526246	568	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCGGCCTCTGCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	27027750	27004565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27022362_27022566_27022696_27023511_27023632_27023718_27023845_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610
90630	chr8	+	2884	7	ISM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	57517	4	56725	-4	3prime_fragment	FALSE	canonical	3	960	junction_1	70.3364928200306	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGAGGCTCACTTGA	NA	False	NA	NA	False	NA	NA	NA	107387499	107396874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
90631	chr16	-	4223	6	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	876	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	469.825329244816	29	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGAAGTGGCTCAGTAGT	8675	False	NA	NA	False	NA	NA	NA	33787373	33774275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784243_33784296_33787195
90632	chr16	-	3324	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	-35	-6	0	6	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCTCTGTAGTCTCCT	8640	False	NA	NA	False	NA	NA	NA	33787408	33775157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
90633	chr5	+	2127	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	123	17	-7	-17	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	632	64	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGTTCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	45650838	45670016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
90634	chrX	+	3133	10	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	759	-5	intron_retention	FALSE	canonical	3	3075	junction_3	325.218483066992	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100474099	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
90635	chr10	-	1835	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	613.701628553232	11	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899702	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116891976_116893092_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
90636	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	89	81	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
90637	chr9	+	1880	7	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	562.32780080266	55	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183592	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846_108214017_108214068
90638	chr5	+	4988	10	NNC	ENSMUSG00000058013.12	novel	5028	10	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	238.521578080216	714	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTGTGCCCGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	93241302	93322817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_93241457_93287340_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93319197
90639	chr2	+	2424	10	FSM	ENSMUSG00000059005.14_ENSMUSG00000093242.4	ENSMUST00000090792.11	1140	10	-3	-1281	-3	446	multi-exon	FALSE	canonical	3	3912	junction_1	2101.42958982395	659	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTGTTGTCCAAACAAAGC	7529	False	NA	NA	False	NA	NA	NA	75489658	75496911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
90640	chr2	-	2844	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	-4	-1468	-4	673	multi-exon	FALSE	canonical	3	51	junction_1	29	381	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGTGTGGTAAATATTT	NA	False	NA	NA	False	NA	NA	NA	177720273	177708814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177711409_177711615_177711743_177720150
90641	chr11	-	933	1	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCAGCCTCTGCTGGTCA	NA	False	NA	NA	False	NA	NA	NA	62444037	62443104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62443100_62444000
90642	chr17	+	2686	1	Intergenic	novelGene_217	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGGGGGCCGCTGCGGCC	NA	False	NA	NA	False	NA	NA	NA	40153888	40156574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156600
90644	chr9	+	5310	2	FSM	ENSMUSG00000032216.16	ENSMUST00000184287.2	779	2	-1947	-2584	-1947	-5	multi-exon	FALSE	canonical	3	3114	junction_1	0	3	217	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGCTGTGGCTCCGTTAC	NA	False	NA	NA	False	NA	NA	NA	72651173	72657129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72653762_72654407
90645	chr10	-	1082	7	NNC	ENSMUSG00000061904.13	novel	1483	7	NA	NA	247	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1541.11107105664	2	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959570	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955416_90957801_90957906_90959419
90646	chr4	+	1509	2	Antisense	novelGene_ENSMUSG00000081260.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	127	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCTGAACACATTAACAGG	NA	False	NA	NA	False	NA	NA	NA	146833971	147033023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_146835025_147032567
90647	chr7	+	2947	15	NNC	ENSMUSG00000030983.5	novel	1244	7	NA	NA	-7	21625	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	787.318207069844	18	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTCTGCAGCATGTCAT	1315	False	NA	-81	True	NA	NA	NA	133311069	133344499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320872_133321008_133322435_133323128_133323879_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335858_133335941_133335986_133338922_133339163_133344156
90648	chr6	-	2437	2	NIC	ENSMUSG00000057841.6	novel	517	4	NA	NA	4	0	intron_retention	FALSE	canonical	3	14202	junction_1	0	35	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115785704	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_115784864_115785658
90649	chr16	-	2369	16	Fusion	ENSMUSG00000034064.15_ENSMUSG00000002846.10	novel	1573	7	NA	NA	14	20	multi-exon	FALSE	canonical	3	59	junction_6	371.529176362892	238	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCATGCCTCAGTCTTTGA	6244	False	NA	NA	False	NA	NA	NA	38370606	38318688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
90650	chr8	+	4051	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	180	-760	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	636.07766821356	65	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGGCACCATTCTTT	NA	False	NA	NA	False	NA	NA	NA	20016645	20045128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20026680_20026747_20030550_20030757_20035860_20036160_20039783_20039904_20041811
90651	chr13	-	2778	23	NIC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-19	1	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	366.54714555887	2337	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCATGGTACTTGGT	NA	False	NA	NA	False	NA	NA	NA	6698780	6631216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6646019_6646099_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
90652	chr4	+	2742	2	Intergenic	novelGene_1844	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	26	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATCAAGGTGTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	51871716	51879777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_51871937_51877255
90653	chr19	+	4025	27	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	20	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	679.079850817989	1	38	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	686	False	NA	NA	False	NA	NA	NA	10583006	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604000_10604483_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
90654	chrX	-	760	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	312	-73	-312	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCCGTGTTCCTACCCC	NA	False	NA	NA	False	NA	NA	NA	79238531	79237771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237800_79238500
90655	chr16	+	5264	1	Antisense	novelGene_ENSMUSG00000052384.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	126	85	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTGAATGAATGAATGAAT	NA	False	NA	NA	False	NA	NA	NA	31966896	31972160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_31966900_31972200
90656	chr6	-	2379	11	NNC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	3149	5	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_10	1224.34884326323	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	9870	False	NA	NA	False	NA	NA	NA	145018761	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145018647
90657	chr5	-	4144	27	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	163	junction_5	145.633410441033	884	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8108	False	NA	NA	False	NA	NA	NA	100564093	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
90658	chr11	-	3279	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	139	-1785	5	1785	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	352	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTTGTTGGCTACCTGG	NA	False	NA	NA	False	NA	NA	NA	33113067	33100501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
90659	chr14	-	2476	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	-6	284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACAATTCAGATAAATA	NA	False	NA	NA	False	NA	NA	NA	99283562	99271695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_99271753_99271806_99273947_99277950_99278097_99283429
90660	chr11	+	3723	10	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	6	-16273	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	102.487698749956	64	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCGGGCTCTCACTCCTA	NA	False	NA	NA	False	NA	NA	NA	4587752	4617112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4615735_4615815
90661	chr1	-	3184	4	FSM	ENSMUSG00000033845.14	ENSMUST00000146665.3	1569	4	37	-1652	-4	398	multi-exon	FALSE	canonical	3	20	junction_1	1077.56031024821	91	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTTCAAATCCCAGCAA	1657	False	NA	NA	False	NA	NA	NA	4855925	4849791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_4852525_4852790_4852957_4854173_4854329_4855795
90663	chr5	+	2907	19	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGGCAAACTTGCCGCGG	NA	False	NA	NA	False	NA	NA	NA	31314756	31336630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315108_31315497_31315599_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323364_31323711_31323733_31325041_31325143_31325326_31325448_31325597_31325823_31326394_31326496_31327181_31327259_31327525_31327619_31330125_31330408_31331111_31331436_31331577_31331839_31336589
90664	chr11	-	1128	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	51	-177	51	177	mono-exon	FALSE	NA	NA	NA	NA	NA	213	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	4512	False	NA	NA	False	NA	NA	NA	20285962	20284834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286000
90665	chr19	-	2687	17	ISM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	110	602	56	-37	5prime_fragment	FALSE	canonical	3	334	junction_16	33.2650341950824	4	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACAGTGTACTTACATAT	1736	False	NA	NA	False	NA	NA	NA	6014120	5991171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
90666	chr4	+	5101	21	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	103	junction_13	147.35890709421	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390679	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
90667	chr8	-	8330	49	NIC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-643	-21	combination_of_known_junctions	FALSE	canonical	3	306	junction_10	284.722571476751	320	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAATATATGAAAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	96534735	96446804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459698_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481740_96482719_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
90668	chr5	-	4205	20	NNC	ENSMUSG00000042508.17	novel	3806	18	NA	NA	-2	17547	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	92.4121204171834	433	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACGCCCGCCCCTCACGGCG	NA	False	NA	NA	False	NA	NA	NA	9211739	9151253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_9151394_9166477_9166530_9167456_9167564_9168453_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
90669	chr11	-	1478	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	985.126819247146	6	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9560	False	NA	NA	False	NA	NA	NA	5828237	5822187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824179_5824379_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828187
90670	chrX	-	8889	27	NNC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	-815	-7	at_least_one_novel_splicesite	FALSE	non_canonical	2	6	junction_1	110.317032380028	663	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAATAACCATCTGGTAT	NA	False	NA	NA	False	NA	NA	NA	73010778	72986409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72987297_72987351_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991124_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
90671	chr15	-	1095	7	NIC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-10	combination_of_known_junctions	FALSE	canonical	3	14	junction_3	724.989578469159	1	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTTGCCTTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	51728879	51649963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_51650222_51651301_51651435_51653388_51653510_51661008_51661109_51662587_51662756_51705863_51706021_51728721
90672	chr12	+	1570	7	NNC	ENSMUSG00000042472.12	novel	2329	8	NA	NA	0	-176	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	74.7811622149738	22	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAAATATCTTAAAGAATAA	1849	False	NA	NA	False	NA	NA	NA	84363891	84377865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84377185_84377688
90673	chr4	+	1914	6	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14288	777	multi-exon	FALSE	non_canonical	0	0	junction_3	35.7189025587293	162	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145159021	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145173065_145173196_145173287_145173342_145176036_145176495_145177162
90674	chr6	+	3184	9	NNC	ENSMUSG00000029815.13	novel	2819	4	NA	NA	2703	127962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGAGGAGGCGGGATTAG	119	False	NA	NA	False	NA	NA	NA	49062221	49191647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_49064374_49064700_49064815_49065362_49065489_49067902_49067987_49071075_49071193_49081109_49081234_49082503_49082640_49084275_49084359_49191399
90675	chr4	+	1944	21	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	222.383964125114	109	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTAGTAGTGTGTTTT	17	True	NA	NA	False	NA	NA	NA	34614985	34660167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636949_34637036_34639244_34639322_34640873_34640977_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
90676	chr4	-	3821	4	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	78	41	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGACTCTTCCACCAGG	NA	False	NA	NA	False	NA	NA	NA	145180366	145159061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159145_145160308_145160382_145176033_145176517_145177184
90677	chr11	+	4243	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-20	-224	intron_retention	FALSE	canonical	3	2354	junction_11	204.486344117537	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTATATGACGCCAATCT	NA	False	NA	NA	False	NA	NA	NA	72332160	72342370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
90678	chr7	+	7142	1	Genic_Genomic	ENSMUSG00000109511.2	novel	NA	NA	NA	NA	6255	1021	mono-exon	FALSE	NA	NA	NA	NA	NA	130	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCCTTGTTCAGGATTGT	28	False	NA	NA	False	NA	NA	NA	44474115	44481257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_44474100_44481300
90679	chr17	+	5769	20	Antisense	novelGene_ENSMUSG00000024002.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	20	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGACACTGATAACTGG	NA	False	NA	NA	False	NA	NA	NA	32415258	32452751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32416795_32417004_32417248_32417329_32417536_32417655_32417787_32417868_32418249_32419978_32420567_32421147_32421521_32421641_32421693_32430135_32430254_32431814_32432109_32432498_32432703_32433606_32433814_32439133_32439264_32440119_32440483_32440846_32441138_32443059_32443197_32443832_32443920_32444549_32444687_32448389_32448666_32452734
90680	chr1	-	5070	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	-10	458	-10	-458	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	499	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTCATATGCAAATAGAT	8251	False	NA	NA	False	NA	NA	NA	106687467	106648646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
90681	chrX	+	1870	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	-52	-750	-52	750	mono-exon	FALSE	NA	NA	NA	NA	NA	15	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAATAAGTAATAA	NA	False	NA	NA	False	NA	NA	NA	79500295	79502165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_79500300_79502200
90682	chr16	+	3017	19	NIC	ENSMUSG00000022779.17	novel	3073	18	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	112.156209957803	163	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	NA	NA	NA	16688784	16710854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_16688920_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
90683	chrX	+	14611	84	NNC	ENSMUSG00000025261.19	novel	14168	81	NA	NA	2670	-5	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_55	159.053202809153	664	92	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATCCCAAGTAGTACTT	1086	False	NA	NA	False	NA	NA	NA	150589327	150718408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150589404_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150642450_150642685_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475_150654653_150657528_150657775_150659290_150659425_150659808_150659877_150661713_150661906_150663495_150663713_150664073_150664197_150665487_150665726_150666074_150666306_150668577_150668701_150669078_150669175_150669739_150670010_150671379_150671533_150672664_150672793_150672985_150673068_150673725_150673903_150674012_150674173_150674735_150675095_150676818_150677015_150677916_150678085_150679558_150679705_150680182_150680250_150681439_150681658_150683896_150684109_150684494_150684678_150686824_150686998_150687349_150687499_150688351_150688428_150689260_150689360_150689946_150690081_150690271_150690441_150691726_150691953_150692404_150692584_150692855_150692946_150693096_150693252_150695204_150695251_150697141_150697430_150698587_150698844_150699036_150699168_150699821_150700037_150700114_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
90684	chr17	+	3768	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	113	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	579.66094615732	3	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGTGGCGCACGTCTT	1619	False	NA	NA	False	NA	NA	NA	56611519	56630483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629714_56629853
90685	chr3	-	4150	27	NIC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_19	269.861470050379	25	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3543	False	NA	NA	False	NA	NA	NA	89959786	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
90686	chr9	-	2465	2	ISM	ENSMUSG00000039952.16	ENSMUST00000171412.7	4415	4	45629	1334	45602	-1334	3prime_fragment	FALSE	canonical	3	469	junction_1	0	4	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCGATCACCCCCTCCGTA	9582	False	NA	NA	False	NA	NA	NA	108095306	108084490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_108086861_108095211
90687	chr12	+	4477	2	Intergenic	novelGene_4390	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605044	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68609023_68609773
90688	chr5	-	4671	27	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	935	1	891	-1	3prime_fragment	TRUE	canonical	3	530	junction_12	187.598636777323	585	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110957028	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612_110942672_110943597_110943700_110944021_110944096_110944192_110944367_110946747_110946785_110946989_110947023_110956870_110956913_110956992
90689	chr11	-	1241	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6479.01620523165	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113076	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33105961_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
90692	chr6	-	5215	14	NNC	ENSMUSG00000040669.15	novel	4213	15	NA	NA	183	2	intron_retention	FALSE	canonical	2	31	junction_13	299.639921973419	22	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAGTTGGCCTCCATTG	9305	False	NA	NA	False	NA	NA	NA	122316388	122294706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122315236
90693	chr5	+	2588	6	NNC	ENSMUSG00000018604.19	novel	4777	8	NA	NA	680	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	336.764249884099	12	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTTTGAAGTTGTGGTAA	NA	False	NA	NA	False	NA	NA	NA	119809762	119822787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816781_119821433
90694	chr2	+	3436	24	NIC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	-2	-122	combination_of_known_junctions	FALSE	canonical	3	15	junction_15	183.567658006966	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTTCAGGACAGGATTT	NA	False	NA	NA	False	NA	NA	NA	166747957	166788187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
90695	chr6	-	544	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	-27	0	-27	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	334	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	115785735	115782465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
90696	chr10	+	7213	12	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	44	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	62647005	62728645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649190_62649300_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62673955_62675666_62700564_62700639_62713928_62715913_62728473
90697	chr7	+	7883	4	FSM	ENSMUSG00000078779.5	ENSMUST00000108331.3	1962	4	-4226	-1695	22	343	multi-exon	FALSE	canonical	3	101	junction_3	43.2075096353503	214	118	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTTGCATTGCTTGG	430	False	NA	NA	False	NA	NA	NA	27538053	27556206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27542313_27543709_27543837_27545828_27545928_27552808
90698	chr2	-	711	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	58	-1	-5	1	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	74	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTCTGATCCTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	32178022	32168826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
90699	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
90700	chr10	-	5705	13	Antisense	novelGene_ENSMUSG00000037608.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	394	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCGAGGCCGTGGGGGAA	NA	False	NA	NA	False	NA	NA	NA	20218247	20188657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20189039_20193750_20193856_20197746_20197861_20198706_20199613_20200883_20201550_20201673_20201844_20203845_20203952_20205050_20205139_20207829_20208005_20209134_20209319_20210244_20210391_20215453_20215666_20215795
90701	chr6	+	2117	9	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACCAGCGAATCCGGG	NA	False	NA	NA	False	NA	NA	NA	144944886	144985291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144946031_144950076_144950152_144953341_144953482_144955774_144955864_144961176_144961318_144964917_144965084_144978510_144978633_144980268_144980378_144985160
90702	chr11	-	1660	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	3	330	3	-330	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	135	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915327	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
90703	chr13	-	2566	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	847	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2061.95587335632	270	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTATGACGTGTGCCCAA	6849	False	NA	NA	False	NA	NA	NA	58548232	58539053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146
90704	chr1	+	4568	29	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	33	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	829.626350459983	4	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATCTATTTGGTTCATC	NA	False	NA	NA	False	NA	NA	NA	185095287	185160552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133863_185139157_185139392_185139687_185139980_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150561_185160046_185160114_185160193
90705	chr13	-	953	8	ISM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	44	20920	11	-2485	5prime_fragment	FALSE	canonical	3	735	junction_3	30.69600785052	2	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTAAATCACTCATACATT	NA	False	NA	NA	False	NA	NA	NA	9046075	9037286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
90706	chr6	-	2760	12	NIC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	85.7515149373443	25	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120341287	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120341034
90707	chr17	-	1170	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	29	6	29	-6	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAATTGTTGCTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	87754334	87740845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
90708	chr18	+	4407	11	FSM	ENSMUSG00000024576.15	ENSMUST00000167187.8	1222	11	-399	-2786	16	256	multi-exon	FALSE	canonical	0	0	junction_10	819.69914602859	1422	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTAGAATGAGCCATGAA	444	False	NA	NA	False	NA	NA	NA	61688360	61723388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
90709	chr13	-	5443	4	FSM	ENSMUSG00000021660.15	ENSMUST00000133826.2	569	4	9	-4883	9	1740	multi-exon	FALSE	canonical	3	6398	junction_3	146.166571645731	33	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGTGGAAGGACTGCC	NA	False	NA	NA	False	NA	NA	NA	98453495	98444663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_98449802_98450146_98450261_98452737_98452807_98453373
90710	chr2	+	2633	16	Antisense	novelGene_ENSMUSG00000040383.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	27	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAAAAGTGTCATTGAA	NA	False	NA	NA	False	NA	NA	NA	113931652	113961099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_113932211_113934484_113934599_113936280_113936462_113938589_113938669_113940362_113940538_113942964_113943135_113943699_113943888_113945060_113945133_113947003_113947141_113949156_113949378_113950388_113950524_113951682_113951799_113956374_113956481_113957434_113957513_113957922_113958135_113961008
90711	chr2	+	2114	9	NIC	ENSMUSG00000059005.14	novel	1734	10	NA	NA	-19	384	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	3855.10570339842	74	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGCTGGCATGCTTTC	7456	False	NA	NA	False	NA	NA	NA	75489585	75496849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75495371_75495495_75495577_75495646_75495741
90712	chr12	-	3778	6	NNC	ENSMUSG00000021248.10	novel	1482	5	NA	NA	-7	7406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	645.602540267617	2	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTTAAAAAAAGAAAAAAGA	8614	False	NA	NA	False	NA	NA	NA	85421471	85379981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_85380150_85387256_85390324_85390998_85391126_85397576_85397651_85401568_85401691_85421251
90713	chr8	+	4818	5	NNC	ENSMUSG00000096401.3	novel	930	5	NA	NA	5280	-208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	480.311032040698	22	136	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGATGTCTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	20717382	20727058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20717497_20721120_20721241_20722101_20722370_20722558_20725644_20725827
90714	chr9	-	1493	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	108	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5755.63280969174	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8433	False	NA	NA	False	NA	NA	NA	78387673	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387137_78387431_78387522
90716	chrX	+	7246	3	Antisense	novelGene_ENSMUSG00002076267.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	139	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAAGGACTCCTCTGGT	NA	False	NA	NA	False	NA	NA	NA	29454531	29811492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_29458322_29803938_29807123_29811220
90717	chrX	+	4297	9	Antisense	novelGene_ENSMUSG00000035725.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGAGCCTTCATCTCGCT	NA	False	NA	NA	False	NA	NA	NA	76804578	76839596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_76807498_76807711_76807861_76808178_76808257_76808954_76809015_76814853_76814947_76816719_76816844_76825645_76825907_76829732_76829902_76839152
90718	chr17	+	8338	14	NNC	ENSMUSG00000039218.18	novel	8564	14	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	71.9060860226768	21	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGTCTGTAGTCTTTAC	NA	False	NA	NA	False	NA	NA	NA	24022202	24043713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24022373_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24030706_24031401_24031595_24034095_24040554_24041491_24041675_24042764_24042879_24042989_24043095_24043189
90719	chr8	+	546	4	ISM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	517	6	214	-6	3prime_fragment	FALSE	canonical	3	17818	junction_3	2374.34959515232	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAAGCTGGGTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	123829605	123831977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_123829726_123829921_123830096_123830636_123830694_123831782
90720	chr2	-	7432	3	Genic_Genomic	ENSMUSG00000103865.2	novel	318	1	NA	NA	-6111	2530	multi-exon	TRUE	non_canonical	0	0	junction_1	0	68	165	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTACATCCGAATCGTG	NA	False	NA	NA	False	NA	NA	NA	16034347	16025388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_16030096_16031583_16034088_16034126
90721	chr12	-	1631	7	NNC	ENSMUSG00000021086.6	novel	2622	21	NA	NA	83578	15192	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10872	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCTCTCAGCCGCTCCGC	NA	False	NA	NA	False	NA	NA	NA	72148225	72132881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_72132957_72136087_72136180_72136728_72136883_72140708_72140916_72141457_72141642_72146820_72146896_72147381
90722	chr16	+	3490	8	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-87	-2	intron_retention	FALSE	non_canonical	0	0	junction_6	1449.06065280588	22	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTTACACTTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	84570923	84619772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84612157_84613153_84613285_84618147_84618191_84619674
90723	chr11	+	1703	1	NIC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	37	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCATATATGGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62442300_62444000
90725	chr16	+	2704	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-1	5	0	-5	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	19	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6053	False	NA	NA	False	NA	NA	NA	22926507	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
90726	chr1	-	2866	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-21	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	644.545043034232	7	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTATTTGTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	20890505	20873198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885114_20886961_20887004_20887466_20887676_20888016_20888130_20890354
90727	chr2	+	8552	38	NNC	ENSMUSG00000003660.11	novel	6745	45	NA	NA	-2664	7409	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	299.447104340696	1386	56	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACAAGCGGCGCGCGCA	NA	False	NA	NA	False	NA	NA	NA	127060950	127089780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127061120_127063664_127063827_127064050_127064175_127066500_127066651_127067002_127067114_127067925_127068058_127068214_127068404_127068864_127069063_127069796_127069950_127070064_127070146_127070461_127070546_127070978_127071086_127071405_127071525_127071805_127071961_127072053_127072244_127072433_127072608_127073606_127073768_127074325_127074554_127074820_127075013_127075099_127075279_127075419_127075572_127076883_127076993_127077879_127077989_127078378_127078569_127078659_127078825_127079380_127079503_127079742_127079887_127079978_127080156_127080419_127080581_127080658_127080741_127081798_127081892_127081988_127084956_127086830_127086923_127087644_127087845_127088332_127088424_127088523_127088634_127088929_127089074_127089394
90729	chr5	-	1183	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	68	-11	11	11	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	2456	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCCTTCCTGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	117425622	117420707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
90730	chr6	-	509	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	179	2	179	-2	multi-exon	FALSE	canonical	3	26814	junction_1	0	18	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTTGGCGTGGTCTGA	NA	False	NA	NA	False	NA	NA	NA	72935106	72934337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72934636_72934895
90731	chr8	-	2196	8	NNC	ENSMUSG00000055553.17	novel	917	7	NA	NA	-7651	-8713	intron_retention	FALSE	non_canonical	0	0	junction_1	0	56	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCCGCCGCGCCTCGGGA	NA	False	NA	NA	False	NA	NA	NA	70988257	70980433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70980485_70982038_70982322_70983583_70983755_70983829_70983921_70984168_70984391_70985224_70985398_70986764_70986843_70987130
90732	chrM	-	1931	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTTTGGCTATAATCTAA	77	True	NA	NA	False	NA	NA	NA	3466	1535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3500
90733	chr11	+	1154	2	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	0	at_least_one_novel_splicesite	FALSE	canonical	3	159	junction_1	0	10	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442977
90734	chr1	-	709	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	678	1	NA	NA	-155	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653887	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24653315_24653441
90735	chrM	+	730	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	112	-161	-112	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTACATTTATTATTTTAC	-11	True	NA	NA	False	NA	NA	NA	7765	8495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8500
90736	chr15	+	8711	57	Antisense	novelGene_ENSMUSG00000037487.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	495	19	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGGAACAAGAAAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	37968125	38047870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_37968748_37970503_37970591_37971990_37972136_37973145_37973259_37973544_37973701_37975828_37975914_37976298_37976479_37978264_37978326_37980032_37980164_37981062_37981211_37981711_37981820_37984188_37984433_37986119_37986221_37986322_37986443_37988446_37988667_37989524_37989641_37989723_37989895_37991538_37991614_37992194_37992427_37996798_37997011_37997167_37997432_37997958_37998222_37998529_37998662_38000135_38000246_38000810_38000940_38002462_38002701_38002800_38002962_38004067_38004198_38004289_38004417_38004492_38004611_38004784_38004933_38006111_38006203_38006697_38006848_38008193_38008291_38008902_38009030_38009364_38009465_38009872_38010022_38013685_38013813_38015181_38015395_38018524_38018720_38019130_38019285_38019475_38019596_38019679_38019816_38021804_38021920_38022608_38022718_38024989_38025174_38028874_38028994_38029741_38029896_38030863_38030977_38031065_38031182_38038058_38038275_38040998_38041147_38041691_38041851_38042017_38042209_38045936_38046055_38047276_38047355_38047785
90737	chrX	-	5102	2	Intergenic	novelGene_4020	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTGCAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	116231727	116226563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116229318_116229379
90738	chr5	-	3645	12	FSM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	92	-205	92	202	multi-exon	FALSE	canonical	3	252	junction_11	40.2726246663991	7	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTGAAGGTTTGTTGC	8686	False	NA	NA	False	NA	NA	NA	123038326	123008525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
90740	chr3	-	3022	5	FSM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	-746	-1458	-703	-5	multi-exon	FALSE	canonical	3	36	junction_4	100.023434754062	77	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCATTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	102074992	102064037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088_102073128_102074153
90741	chr6	-	2705	12	NIC	ENSMUSG00000030177.15	novel	1887	12	NA	NA	34	3	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	79.1423030510953	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGCTCTACAAAGTCTCG	NA	False	NA	NA	False	NA	NA	NA	120341283	120301280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120341034
90742	chr19	-	2336	18	FSM	ENSMUSG00000024833.16	ENSMUST00000165143.3	2391	18	69	-14	15	14	multi-exon	FALSE	canonical	3	24	junction_1	92.2413338358681	29	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGTC	1695	False	NA	NA	False	NA	NA	NA	6014161	5991120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_5991581_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
90743	chr10	+	7731	13	Antisense	novelGene_ENSMUSG00000084569.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	103	18	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCACCTGCCTCTGCCTCCC	NA	False	NA	NA	False	NA	NA	NA	62647005	62734902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62713928_62715911_62734715
90744	chr3	-	4431	6	FSM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	-38	97	-29	-8	multi-exon	FALSE	canonical	3	59	junction_2	5.35163526410386	232	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGAATTTTGTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	154302770	154282164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_154285929_154293113_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
90745	chr13	+	4945	34	NNC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	0	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	97.4371403875618	13676	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	NA	NA	NA	97274484	97334865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107_97313100_97313306_97313409_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
90746	chr4	+	1873	4	Intergenic	novelGene_2057	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	16.9705627484771	2	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	6366	False	NA	NA	False	NA	NA	NA	146293424	146319729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146293573_146312913_146312972_146316363_146316369_146318067
90747	chr18	-	3650	4	NIC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	-49	1652	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	102.009803450453	223	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTAGCTTGGAATTGC	NA	False	NA	NA	False	NA	NA	NA	24153476	24145329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_24147743_24150340_24150489_24150724_24151226_24152888
90748	chrM	+	1064	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	79	1	79	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	77	False	NA	-44	True	NA	NA	NA	14223	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
90749	chr9	-	1732	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	9	53	-9	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	25	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	7153	False	NA	NA	False	NA	NA	NA	78388953	78385739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
90750	chr2	-	4642	5	FSM	ENSMUSG00000078903.11	ENSMUST00000109058.9	1854	5	-1	-2787	-1	-1062	multi-exon	FALSE	canonical	3	35	junction_1	82.2936814099357	145	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175048711	175033919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
90751	chr9	+	5723	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	34	-2471	12	-6	multi-exon	TRUE	canonical	3	154	junction_1	46.9081733954962	321	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAATTTTGAACGTTT	NA	False	NA	NA	False	NA	NA	NA	14695983	14748413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
90752	chr9	+	3983	18	ISM	ENSMUSG00000042557.15	ENSMUST00000049169.6	4845	20	7854	466	-813	-464	3prime_fragment	FALSE	canonical	3	239	junction_7	36.4221689972422	8	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTCCTTGAAGTTCACCT	4190	False	NA	NA	False	NA	NA	NA	57001718	57035184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
90753	chr13	+	2633	4	Intergenic	novelGene_1449	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	95.5649866146941	22	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGTGAATGTAATCACTG	NA	False	NA	NA	False	NA	NA	NA	66773921	66785022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66774068_66780893_66781110_66782550_66782678_66782878
90754	chr11	+	2583	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	29	-3955	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	2046.53471344449	2	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTGGCAATGTAGAC	NA	False	NA	NA	False	NA	NA	NA	55360572	55391709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55390691_55390793
90755	chr14	-	7144	28	Antisense	novelGene_ENSMUSG00000002325.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	365	47	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTACGGAACCTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	55847484	55829069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55829528_55829623_55829770_55829914_55830068_55830283_55830350_55830462_55830531_55831749_55831928_55832377_55832757_55832924_55833215_55833460_55833711_55833796_55833988_55834109_55834315_55836093_55836265_55836356_55836457_55836546_55836640_55838502_55838619_55838733_55838855_55839095_55839211_55839335_55839394_55840057_55840157_55840712_55840879_55840985_55842688_55843175_55843361_55843547_55843623_55843773_55843895_55843992_55844064_55844968_55845311_55846139_55846256_55846375
90756	chr11	-	6650	29	NNC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	3	489	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	94.3880126858041	538	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAATGGAAAATTTCCAA	NA	False	NA	NA	False	NA	NA	NA	68899283	68876033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_68876087_68876295_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
90757	chr9	+	3467	20	NIC	ENSMUSG00000031928.16	novel	3286	20	NA	NA	22	201	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	53.5567113407824	223	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTACCACCAATCACCAAG	NA	False	NA	NA	False	NA	NA	NA	14696019	14746143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_14696104_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
90758	chr7	-	923	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	45	0	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109263	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
90759	chr9	+	1460	7	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	87.465072394007	1	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174120	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174403_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108176970_108178549
90760	chr6	-	4272	16	NNC	ENSMUSG00000029924.13	novel	4030	15	NA	NA	-2238	2	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_15	87.3160288199646	263	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTGCCCTTAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	39352102	39311704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39344577_39344701_39351928
90761	chr5	-	3572	5	FSM	ENSMUSG00000029505.18	ENSMUST00000146458.9	3673	5	-132	233	0	165	multi-exon	FALSE	canonical	3	52	junction_3	2.77263412660235	150	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATAGATGAGTTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	110918583	110885770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_110887548_110888047_110888156_110889835_110889927_110903262_110904633_110918357
90763	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
90764	chr11	-	1002	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	58	-1	3	1	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	1602	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGAGTGCTTGAGAA	NA	False	NA	NA	False	NA	NA	NA	97673205	97668351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
90765	chr5	+	4781	7	FSM	ENSMUSG00000018604.19	ENSMUST00000079719.11	4982	7	364	-163	15	0	multi-exon	FALSE	canonical	3	458	junction_2	196.719272625288	1084	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	119809097	119822789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
90766	chr12	+	5128	2	Intergenic	novelGene_4372	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605026	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605750_68605867
90767	chr17	+	2632	10	NIC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	19	0	intron_retention	FALSE	canonical	3	3235	junction_6	184.546558078891	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135287	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
90768	chr17	+	3565	4	NIC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-16	-2016	combination_of_known_splicesites	FALSE	canonical	3	346	junction_2	1332.66950141436	18	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGTGGTATGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	13226866	13237005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_13226956_13227070_13227274_13232319_13232500_13233912
90769	chr6	+	4061	22	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_2	47.8662156763474	248	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAATTCTTTTTTTCCTAC	NA	False	NA	NA	False	NA	NA	NA	114620080	114837573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_114620112_114623897_114624019_114648062_114648214_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
90770	chr11	-	3867	4	NIC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	44	-11	intron_retention	FALSE	canonical	3	1121	junction_1	35.1220095603249	8	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTAAAATGTCCACTGAA	8237	False	NA	NA	False	NA	NA	NA	102907950	102884885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_102888267_102890469_102890674_102890975_102891183_102907875
90771	chr12	-	2192	2	Antisense	novelGene_ENSMUSG00000112392.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGGTGAGAGTCTGTACC	7290	False	NA	NA	False	NA	NA	NA	77617750	77599856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_77600570_77616271
90772	chr4	+	4146	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	6	41593	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	53.3516635167077	953	58	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATCCGCTACGGCTCC	NA	False	NA	NA	False	NA	NA	NA	146206906	146256597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207267_146209452_146209546_146240246_146240316_146250678_146250737_146251579_146251707_146253158
90773	chr2	+	3823	10	ISM	ENSMUSG00000033943.16	ENSMUST00000156510.2	6995	21	-77	28865	0	5238	5prime_fragment	FALSE	canonical	3	29	junction_1	32.6227974517859	2	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTAAGCCTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	119727708	119762410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_119727828_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859_119757203_119762191
90774	chr10	-	3282	19	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	368	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.56405583785	19	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175953	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105180_62105558_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
90775	chr10	-	1383	7	NNC	ENSMUSG00000006736.10	novel	1556	6	NA	NA	0	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	229.022136242087	32	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTCTTTGTCTTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	126906130	126903158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_126903729_126903888_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
90777	chr1	+	3572	7	FSM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	59	5	59	-5	multi-exon	FALSE	canonical	3	170	junction_1	15.8893745069534	341	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATCAGTGTGTTGCTCG	NA	False	NA	NA	False	NA	NA	NA	82294231	82423082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
90778	chr11	-	1409	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	22	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1252.4809601569	172	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATTGTGTGGTCTGTGCA	NA	False	NA	NA	False	NA	NA	NA	120472428	120468933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469482_120469913_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
90779	chr18	-	4516	22	FSM	ENSMUSG00000042211.8	ENSMUST00000048688.8	4254	22	-168	-94	-168	94	multi-exon	FALSE	canonical	3	214	junction_21	37.2590368590547	289	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTGCCATGGACTTGAAA	NA	False	NA	NA	False	NA	NA	NA	62681934	62637131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
90780	chrX	-	3384	10	NIC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	0	-14	intron_retention	FALSE	canonical	3	1235	junction_1	113.952231707462	3	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGCTACTTTTACAGTTC	NA	False	NA	NA	False	NA	NA	NA	158921352	158905218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158913232_158915064_158915239_158916168_158916229_158921251
90781	chr7	-	2374	9	Antisense	novelGene_ENSMUSG00000059851.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCCTACGGGTTCGAGGA	2514	False	NA	NA	False	NA	NA	NA	4750508	4743689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_4743813_4744772_4744978_4745117_4745285_4745487_4745726_4745943_4746109_4746244_4746264_4748798_4748936_4749073_4749259_4749373
90782	chr5	+	2526	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	-530	-21	530	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	36	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCCCGAATTTCACTGG	NA	False	NA	NA	False	NA	NA	NA	108048416	108057401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
90783	chr15	-	2296	13	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-79	614	intron_retention	FALSE	canonical	3	2899	junction_9	238.493652373019	63	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATACCAGCTAATCATTTT	7244	False	NA	NA	False	NA	NA	NA	11392435	11383476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317
90784	chr13	-	2482	20	NNC	ENSMUSG00000021196.15	novel	2679	22	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	457.737462403433	2	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCATGGTACTTGGT	NA	False	NA	NA	False	NA	NA	NA	6698761	6631216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653498_6654991_6655118_6655671_6655818_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
90785	chrM	+	842	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	0	-161	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-11	True	NA	NA	False	NA	NA	NA	7765	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
90786	chr2	-	2873	16	NNC	ENSMUSG00000027201.17	novel	2071	19	NA	NA	-72	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	215.150634569261	558	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGTATACAGCTTACT	NA	False	NA	NA	False	NA	NA	NA	124965406	124929669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124940716_124940768_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124957344_124957411_124958584_124958794_124965304
90787	chr13	-	3361	23	Antisense	novelGene_ENSMUSG00000021500.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACGAAAACAGGATGTGCT	9339	False	NA	NA	False	NA	NA	NA	55826791	55782837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55782960_55785830_55786026_55787601_55787746_55793181_55793280_55795438_55795605_55798226_55798378_55799854_55799969_55800723_55800890_55801412_55801536_55801816_55801991_55802819_55802941_55806829_55806909_55808524_55808610_55811028_55811196_55811590_55811753_55813997_55814192_55817522_55817663_55818016_55818167_55821753_55821931_55823708_55823925_55824579_55824728_55825333_55825407_55826595
90788	chr5	+	4310	17	NNC	ENSMUSG00000005672.13	novel	5214	21	NA	NA	4789	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	359.530113264174	12	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTTTCTGTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	75776022	75817382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75776147_75781503_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
90789	chrX	+	4534	1	Intergenic	novelGene_3951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTTTTCTCGTTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	63977671	63982205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63977700_63982200
90790	chr17	+	2848	18	NIC	ENSMUSG00000036552.20	novel	1571	7	NA	NA	4	191	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	65.0153561844614	103	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAATGCATACCACAGTA	NA	False	NA	NA	False	NA	NA	NA	15261938	15284685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15262096_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
90791	chr10	-	5714	12	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	140	1395	combination_of_known_splicesites	FALSE	canonical	3	8	junction_11	56.4202062156945	16	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCCTAGAACCAAGC	NA	False	NA	NA	False	NA	NA	NA	62728625	62647005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62728473
90792	chr15	+	2271	4	FSM	ENSMUSG00000051225.10	ENSMUST00000160942.8	2876	4	294	311	-197	-311	multi-exon	FALSE	canonical	2	2	junction_1	4.49691252107735	252	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAAACTGTTCCCTGGA	9507	False	NA	NA	False	NA	NA	NA	57849108	57874094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_57849938_57856302_57856471_57858609_57858735_57872945
90793	chr4	+	1325	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	-3800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	49.5094687913332	263	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATCCGTTATTTCTGCA	NA	False	NA	NA	False	NA	NA	NA	147576855	147594077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578926_147579738_147579813_147591992_147592098_147593177
90794	chr5	-	2419	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	-15	-607	-15	607	multi-exon	FALSE	canonical	3	122	junction_1	3.5	319	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCCATAGCTGGTGCT	9694	False	NA	NA	False	NA	NA	NA	115479252	115470690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115472654_115473525_115473630_115478900
90795	chr11	-	4001	2	Antisense	novelGene_ENSMUSG00000035530.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	473	46	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGGCGGCGCCTGTATT	NA	False	NA	NA	False	NA	NA	NA	100215039	100210811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_100214304_100214530
90796	chr10	+	1940	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_16	100.405509988178	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	NA	False	NA	NA	NA	93289279	93320737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
90797	chr8	-	2130	10	NNC	ENSMUSG00000031578.6	novel	1902	10	NA	NA	0	295	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	244.810634804904	13	10	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTGCTTGTTCGTTTTG	NA	False	NA	NA	False	NA	NA	NA	31658792	31649195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656156_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
90798	chr17	-	4593	6	NIC	ENSMUSG00000024097.12	novel	1921	7	NA	NA	-56	-4	intron_retention	FALSE	canonical	3	1956	junction_1	145.974792344432	117	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATCCTGATATTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	80514792	80507512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80511662_80511741_80512868_80513276_80513458_80514603
90799	chr10	-	7679	12	ISM	ENSMUSG00000047146.18	ENSMUST00000174189.2	14369	13	19578	5922	474	2123	3prime_fragment	FALSE	canonical	3	87	junction_3	53.7757818236407	25	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTCAAGCTGATGTGTT	NA	False	NA	NA	False	NA	NA	NA	62715319	62646277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930
90800	chr17	-	1507	10	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3126	7404	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	53	8	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCAACCGCAAGGTCTGC	NA	False	NA	NA	False	NA	NA	NA	13143443	13135295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139279_13141527_13141620_13142104_13142297_13142415_13142580_13143145
90802	chr8	+	1152	3	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	-15	-4	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	44.5	270	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGACACATATAGAGTGGG	NA	False	NA	NA	False	NA	NA	NA	85640004	85649540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85640158_85646999_85647134_85648675
90803	chr10	-	4821	10	NIC	ENSMUSG00000036112.16	novel	4424	11	NA	NA	-10	-13	intron_retention	FALSE	canonical	3	2022	junction_3	157.927628369672	3734	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGCAATAAATTTTGGA	NA	False	NA	NA	False	NA	NA	NA	93725656	93694363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93716001_93722855_93722964_93725399
90804	chr15	+	3107	14	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	61	-591	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	235.81484061283	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACGATTGAGCAAGGTCCT	NA	False	NA	-33	True	NA	NA	NA	101982359	102005017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001687_102003106_102003213_102003411_102003485_102003687
90805	chr5	+	6816	33	Fusion	ENSMUSG00000013495.16_ENSMUSG00000033540.19	novel	3956	11	NA	NA	24	12002	multi-exon	FALSE	non_canonical	0	0	junction_11	58.7255268175604	203	30	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACTGCGCTACCTAACGCG	NA	False	NA	NA	False	NA	NA	NA	108777659	108808650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704_108796680_108797012_108797163_108797242_108797353_108797449_108797598_108797688_108797792_108798066_108798245_108798354_108798507_108798686_108798835_108800262_108800373_108801041_108801086_108801501_108801653_108801949_108802014_108802223_108802275_108802407_108802500_108802580_108802805_108802974_108803075_108803155_108803229_108803303_108803459_108803708_108803835_108803910_108803999_108804288_108804392_108806072_108806152_108808308
90806	chr11	+	6703	46	ISM	ENSMUSG00000040850.18	ENSMUST00000041231.14	6491	47	19437	-782	18842	782	3prime_fragment	TRUE	canonical	2	239	junction_12	60.7073123913238	421	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAATACCTGACTTTTA	NA	False	NA	NA	False	NA	NA	NA	30741162	30831143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_30741233_30741921_30742039_30752813_30752859_30754289_30754440_30754962_30755027_30756254_30756330_30757702_30757826_30759835_30759929_30760782_30761049_30761977_30762165_30763662_30763753_30765227_30765293_30765557_30765709_30767730_30767830_30768088_30768159_30769003_30769072_30769927_30770144_30770915_30771074_30773058_30773155_30780349_30780406_30782133_30782191_30782388_30782445_30782531_30782631_30784085_30784149_30784273_30784370_30785335_30785468_30787281_30787492_30788884_30789022_30791568_30791623_30791990_30792121_30793506_30793589_30795179_30795334_30795827_30795898_30797397_30797524_30798046_30798200_30800602_30800708_30801142_30801235_30802672_30802805_30803176_30803386_30806029_30806116_30811347_30811477_30815433_30815590_30824117_30824281_30826745_30826880_30828378_30828518_30829663
90808	chr2	+	6242	30	NNC	ENSMUSG00000033059.8	novel	3909	20	NA	NA	11	26719	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	71.6319533586363	389	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCGTCTATGAGACAGAA	NA	False	NA	NA	False	NA	NA	NA	150628665	150700397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716_150650821_150653173_150653306_150655310_150655423_150655840_150655924_150656905_150657050_150657537_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281_150675065_150676203_150676330_150677194_150677272_150679271_150679355_150680234_150680315_150680660_150680699_150681639_150681768_150684163_150684219_150688137_150688287_150690274_150690380_150700280
90809	chr8	-	3259	20	Intergenic	novelGene_1754	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGGCATCCATTTCGGAA	NA	False	NA	NA	False	NA	NA	NA	111782201	111763574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111763704_111766761_111766951_111767226_111767374_111768108_111768299_111768869_111769016_111769292_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
90810	chr17	-	4403	14	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	9	3801	intron_retention	FALSE	non_canonical	0	0	junction_1	4489.95585698046	66367	25	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCAGCCAGCCAGTCAG	NA	False	NA	NA	False	NA	NA	NA	45884170	45874899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45874992_45875502_45875697_45875847_45876000_45877228_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
90811	chr7	+	3060	28	NIC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	10	-18	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	347.18983947761	3	32	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACTTCTTAGATGCCTAC	2639	False	NA	-98	True	NA	NA	NA	13012770	13045332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023313_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
90812	chr8	+	2318	6	NNC	ENSMUSG00000096401.3	novel	930	5	NA	NA	-14516	576	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	533.566340767481	45	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGTTGTTGGAAAATACCAA	NA	False	NA	NA	False	NA	NA	NA	20697586	20727842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20697782_20711891_20712265_20717197_20717497_20721120_20721241_20723149_20723720_20727081
90813	chr6	-	9424	28	FSM	ENSMUSG00000045962.17	ENSMUST00000060043.13	10575	28	1151	0	138	0	multi-exon	FALSE	canonical	1	2	junction_17	5.22340412157474	16	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGTTGTTCTTTCTGA	8309	False	NA	NA	False	NA	NA	NA	120014482	119900929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935_119926381_119926968_119927092_119927203_119927262_119927459_119927634_119927975_119928093_119928595_119928759_119928858_119928957_119929645_119929931_119930731_119931194_119933031_119933158_119937604_119937686_119945436_119945625_119946197_119946532_119947818_119948039_119949728_119949818_119967052_119967211_119969300_119969522_119979153_119979327_120013834
90814	chr15	+	2941	7	NIC	ENSMUSG00000009585.19	novel	1953	9	NA	NA	-1	-1	intron_retention	FALSE	canonical	3	242	junction_5	151.887842392558	19	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTAAGTTGTGCATGATT	8245	False	NA	NA	False	NA	NA	NA	79776602	79792118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79791165_79791504
90815	chr1	+	1544	2	FSM	ENSMUSG00000026698.9	ENSMUST00000111594.3	3290	2	-1	1747	-1	-642	multi-exon	FALSE	canonical	3	13	junction_1	0	141	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGTTTGTCTATTTCCA	NA	False	NA	NA	False	NA	NA	NA	161796753	161799257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_161796849_161797808
90816	chr9	-	1640	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	183	1	-8	-1	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTGTGGCCGTGTTATCA	NA	False	NA	NA	False	NA	NA	NA	89996644	89973718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
90817	chr17	-	3325	12	Antisense	novelGene_ENSMUSG00000091586.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	64	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGAGCCCTCCTCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	32749133	32725438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_32725551_32725865_32726066_32736866_32737213_32739334_32739387_32739473_32739605_32741091_32741214_32742975_32743245_32743550_32743618_32743806_32743938_32746813_32746943_32747014_32747336_32747688
90818	chr17	+	1555	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1081.39077580678	10	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135328	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139280_13141118_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
90819	chr11	-	2337	8	NNC	ENSMUSG00000045667.15	novel	3572	8	NA	NA	-8710	-11	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_7	186.568584533125	2	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGTTGATGACTTTGA	NA	False	NA	NA	False	NA	NA	NA	72311249	72280950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_72282240_72290699_72290852_72291154_72291273_72292173_72292354_72293250_72293327_72293836_72294077_72294742_72294831_72311055
90820	chr13	-	7143	5	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	84	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	23514002	23354445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23354750_23359017_23361359_23508976_23510238_23510644_23512271_23512391
90821	chr13	-	4377	4	FSM	ENSMUSG00000069208.10	ENSMUST00000202645.4	1406	4	-37	-2934	-15	2934	multi-exon	FALSE	canonical	3	29	junction_3	20.237478982214	295	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAAGGAAGCTGATGGCA	NA	False	NA	NA	False	NA	NA	NA	74642126	74625238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968
90822	chr9	-	812	4	Fusion	ENSMUSG00000060461.6_ENSMUSG00000032346.8	novel	619	3	NA	NA	467	-14	multi-exon	FALSE	canonical	3	17943	junction_3	76281.5751323127	101	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTGATTAAAATGTGCG	NA	False	NA	NA	False	NA	NA	NA	78285540	78274347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_78274577_78275002_78275186_78275266_78275383_78285256
90823	chr2	-	3515	2	NNC	ENSMUSG00000027547.18	novel	773	2	NA	NA	-629	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	0	20	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCGGGCTTGTGTGTAT	3270	False	NA	NA	False	NA	NA	NA	168598492	168590254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168592165_168596887
90824	chr4	-	2036	7	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	-4	intron_retention	FALSE	canonical	3	28	junction_1	398.788756388921	514	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTCTCAAGTCAAATGG	NA	False	NA	NA	False	NA	NA	NA	148711222	148701186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148702283_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
90825	chr12	+	3109	17	NNC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	1255	-6	intron_retention	TRUE	non_canonical	0	0	junction_10	308.446859027207	78	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGACTAAAAAAAGTGTGAA	1011	False	NA	NA	False	NA	NA	NA	109601832	109628137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109601892_109604272_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611237_109611337_109611695_109611766_109615587_109615677_109616505_109617534_109618292_109618373_109619134_109619140_109620724_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
90826	chr6	-	2828	9	ISM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	11387	33	9517	-14	3prime_fragment	FALSE	canonical	3	888	junction_8	91.6787870774914	14	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCTCAGTAAAAGGATGA	NA	False	NA	NA	False	NA	NA	NA	122302587	122294722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416
90827	chrX	+	2648	15	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-8065	-3	intron_retention	TRUE	non_canonical	0	0	junction_1	575.891837208399	3243	6	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAGACACGGGGCTCCTG	NA	False	NA	NA	False	NA	NA	NA	72822568	72834427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_72822780_72823073_72823132_72823218_72823318_72823584_72823732_72823814_72823921_72824178_72824314_72824503_72824637_72824757_72824818_72825281_72825401_72825615_72825710_72826280_72826325_72830382_72830913_72832440_72832560_72833405_72834031_72834259
90828	chr2	-	1200	6	NIC	ENSMUSG00000005233.17	novel	1352	7	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	343.043204276079	34	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	NA	False	NA	NA	NA	69036491	69024238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_69024890_69027478_69027578_69032915_69033063_69035199_69035266_69035369_69035523_69036407
90829	chrX	+	7470	7	FSM	ENSMUSG00000041649.14	ENSMUST00000112574.9	4752	7	73	-2791	73	2791	multi-exon	FALSE	canonical	3	21	junction_2	59.2527542725981	303	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCGTGGGTTTTGTGTTTA	4340	False	NA	NA	False	NA	NA	NA	152020816	152181919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_152021089_152091847_152091921_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
90830	chr17	+	3292	16	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-24	-23	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	608.767388526466	2	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATAAAATTCTGGCCGG	475	False	NA	NA	False	NA	NA	NA	56610375	56630463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
90831	chrX	+	3376	5	NNC	ENSMUSG00000031381.17	novel	3321	4	NA	NA	220	518	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	103.649348767853	3	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTTAAAAAGCTACTTG	NA	False	NA	NA	False	NA	NA	NA	163208725	163217430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_163208824_163210927_163211061_163211535_163211669_163211806_163212014_163214625
90832	chr11	-	4392	27	Antisense	novelGene_ENSMUSG00000020850.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	47	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTTAAATAAGCCCATCAG	NA	False	NA	NA	False	NA	NA	NA	75395554	75382583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75382700_75382783_75382981_75383089_75383206_75383319_75383457_75383803_75383933_75384174_75384376_75384642_75384841_75384956_75385121_75385248_75385378_75385497_75385691_75386057_75386250_75386408_75386645_75386853_75387003_75387166_75387382_75387793_75387904_75390622_75390871_75390972_75391152_75391334_75391472_75391589_75391759_75391891_75392025_75392143_75392287_75392590_75392758_75393323_75393514_75394094_75394333_75394440_75394570_75395301_75395416_75395491
90833	chr4	+	5490	7	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	1275	6	NA	NA	-32	64249	multi-exon	FALSE	non_canonical	0	0	junction_1	193.968568473234	35	105	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTAAATCTTAAAAGAAGT	NA	False	NA	NA	False	NA	NA	NA	146586451	146806866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146586609_146597241_146597335_146695466_146695586_146697966_146698060_146797295_146797381_146800390_146800518_146802050
90834	chr3	-	3686	26	NNC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_21	281.774093912127	460	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGATTTCCTATGCTTTT	3547	False	NA	NA	False	NA	NA	NA	89959782	89913305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946175_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
90835	chr4	+	2890	3	Intergenic	novelGene_1845	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	6	167	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATCAAGGTGTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	51871716	51879777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_51871937_51872150_51872299_51877255
90836	chr9	+	6861	19	NNC	ENSMUSG00000034563.17	novel	2939	8	NA	NA	0	23331	intron_retention	FALSE	non_canonical	0	0	junction_8	86.2094062640212	262	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCCGCCGTCCCTTCGCT	NA	False	NA	NA	False	NA	NA	NA	72892859	72946953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72923577_72924671_72924856_72925153_72925364_72928565_72928635_72929558_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946039_72946741
90837	chr11	+	3023	15	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	0	159	intron_retention	FALSE	canonical	0	0	junction_1	81.6838417313975	2	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTTTTAAAAAAATGGTAA	NA	False	NA	NA	False	NA	NA	NA	29476446	29495438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476844_29477719_29477802_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
90838	chr6	-	703	6	Antisense	novelGene_ENSMUSG00000029836.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGGCGCGGGCAGCTCCG	8832	False	NA	NA	False	NA	NA	NA	51459628	51447640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_51447720_51448795_51448848_51452209_51452353_51455415_51455579_51458701_51458797_51459457
90839	chr7	+	1246	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	338	0	-149	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	25	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTGGTACTTGTGTAGTG	NA	False	NA	NA	False	NA	NA	NA	46495266	46504713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
90840	chr8	-	1532	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	-17	-166	-17	166	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCACACCCAGCTAACCAA	NA	False	NA	NA	False	NA	NA	NA	23727692	23716465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
90841	chr13	+	7586	5	Fusion	ENSMUSG00000114777.2_ENSMUSG00000114426.2	novel	1568	3	NA	NA	-6364	5879	multi-exon	FALSE	non_canonical	0	0	junction_3	29.4703240565828	231	79	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTCGTTTCACCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	66667678	66729854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66667826_66674049_66674177_66721308_66721370_66722339_66727887_66728150
90843	chr3	+	2599	3	Antisense	novelGene_ENSMUSG00000040774.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAGTTAGACGAACAG	NA	False	NA	NA	False	NA	NA	NA	106437331	106447693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_106438595_106440670_106440818_106446504
90844	chr11	-	3240	14	NNC	ENSMUSG00000038909.17	novel	3414	15	NA	NA	3351	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	249.307158283908	2	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	95196988	95165084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194095_95196907
90845	chr4	+	4614	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	2914	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	35.5422284050958	945	32	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	145159006	145180372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145160315_145160385_145173065_145173196_145173287_145173342_145176036
90846	chr7	+	1407	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	177	0	12	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTCCAGTGTGTACGTC	NA	False	NA	NA	False	NA	NA	NA	46495266	46504874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
90847	chrM	+	332	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	722	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	117	False	NA	-74	True	NA	NA	NA	14866	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14887_14976
90848	chr4	+	4303	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	8	1658	multi-exon	FALSE	non_canonical	0	0	junction_3	65.0688803013658	2	65	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTTCCAGGTTCCAGG	NA	False	NA	NA	False	NA	NA	NA	147216502	147419849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216568_147219028_147219122_147224494_147224548_147249797_147249844_147409230_147409335_147413438_147413566_147415724_147419043_147419352
90849	chr7	+	1649	13	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	-15	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	362.146408008327	23	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTCTCAGCTGGTTCCT	NA	False	NA	NA	False	NA	NA	NA	120234447	120258751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244383_120250111_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
90850	chr17	-	2056	8	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	17	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	326.525306079336	119	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050166	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007096_7020407_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
90851	chr5	+	2451	7	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	273	2259	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	77.9602819104418	2509	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGTGGGCTAGAGTGA	NA	False	NA	NA	False	NA	NA	NA	110071538	110094061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110071633_110076627_110076764_110088291_110088419_110088605_110088667_110089940_110090072_110090155_110091916_110093919
90852	chr2	-	984	7	NNC	ENSMUSG00000051730.16	novel	968	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	191.145378064853	60	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	6823	False	NA	NA	False	NA	NA	NA	69715942	69701541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711326_69711640_69711756_69715592
90853	chr19	+	3862	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-33	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	10	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAATGTCTCGTGGTGTT	1436	False	NA	NA	False	NA	NA	NA	44282481	44295297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291982_44293199
90854	chr2	-	2823	4	NIC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	117	-2	intron_retention	FALSE	canonical	3	2404	junction_2	56.4052795007307	34	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTACGTTGTGCAAAGTTT	8342	False	NA	NA	False	NA	NA	NA	132095117	132091083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132093359_132093610_132093679_132093822_132093921_132094735
90855	chr6	+	3600	8	NNC	ENSMUSG00000036371.7	novel	1667	8	NA	NA	-3	2120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2441.50202179908	12	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGTGGAGTGTAAGTAT	5841	False	NA	NA	False	NA	NA	NA	67243963	67263415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244199_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
90856	chr1	-	6479	41	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9525	-40	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_25	265.37141895841	6	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGGCTGTGTGTATCCA	NA	False	NA	NA	False	NA	NA	NA	84827762	84702024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736768_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84827643
90857	chr6	+	4857	3	NIC	ENSMUSG00000040370.14	novel	1618	4	NA	NA	3	-16	intron_retention	FALSE	canonical	3	25	junction_1	148	31	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGAATAAATCTTAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	145156914	145162249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_145160511_145160909_145160998_145161076
90858	chr19	+	3270	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	-145	10	-145	-10	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	919	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTCCAGGCTCAGCT	3324	False	NA	NA	False	NA	NA	NA	8919093	8929657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
90859	chr4	+	1832	8	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	-16	-356	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5327.18799735692	7	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTACCCACCTTGGC	NA	False	NA	NA	False	NA	NA	NA	150321680	150330993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150330500_150330659
90861	chr12	+	1494	6	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	0	820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1882.60621479905	3	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9259	False	NA	NA	False	NA	NA	NA	100165787	100173574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171962_100172356_100172493_100172669
90862	chr5	+	2455	3	ISM	ENSMUSG00000005672.13	ENSMUST00000202167.2	3175	5	3724	-29	3625	1	3prime_fragment	FALSE	canonical	3	1066	junction_2	80.5	6	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTTCTGTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	75813477	75817383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75813517_75813879_75813986_75815073
90863	chr2	-	1229	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	-78	0	-16	0	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	59	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	NA	False	NA	NA	NA	26806558	26803394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
90864	chr16	+	2097	10	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-3	intron_retention	FALSE	canonical	3	380	junction_9	687.611647500083	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATAGGTGGTCTGGCC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
90865	chr7	-	687	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	-25	-37	-25	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	92828877	92828190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92828200_92828900
90866	chr7	+	937	5	FSM	ENSMUSG00000019738.16	ENSMUST00000138118.8	435	5	-440	-62	-38	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.6717259162333	368	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	29931334	29932812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29931830_29931906_29931962_29932174_29932407_29932491_29932544_29932709
90867	chr4	-	2467	5	Antisense	novelGene_ENSMUSG00000028517.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	17	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTAACCAAGCAGAGGCA	NA	False	NA	NA	False	NA	NA	NA	105089951	105063349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_105063443_105065720_105065999_105066393_105066454_105076523_105076702_105088093
90868	chr3	+	6102	20	FSM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	-15	3	-15	-3	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	548	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCAAGTTTCACTTTTCC	NA	False	NA	-80	True	NA	NA	NA	51323421	51383403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
90869	chr12	+	2131	7	Antisense	novelGene_ENSMUSG00000061477.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGGCTCTCGCGAGAACG	4354	False	NA	NA	False	NA	NA	NA	28679603	28685880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_28681191_28681620_28681774_28683766_28683832_28684207_28684351_28685413_28685486_28685577_28685662_28685853
90870	chr15	+	3623	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	228.116030715484	2179	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-35	True	NA	NA	NA	101982357	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003169_102003448_102003485_102003687
90871	chr3	+	5319	12	Antisense	novelGene_ENSMUSG00000105412.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	360	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGGTCCCCCGCCCCCCT	5548	False	NA	NA	False	NA	NA	NA	94404850	94489869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_94408579_94409476_94409537_94410162_94410292_94410765_94410913_94418342_94418438_94426353_94426519_94427494_94427573_94431491_94431598_94436218_94436286_94438504_94438700_94469076_94469307_94489550
90872	chr5	-	3642	13	NIC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	-27	0	intron_retention	FALSE	canonical	3	58	junction_12	99.7441170640599	302	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	123060197	123008730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
90873	chr8	-	3207	21	NNC	ENSMUSG00000000759.15	novel	5724	16	NA	NA	0	2939	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	38.6844607045258	16	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	12722123	12668859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_12669532_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
90874	chr2	-	989	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	171	0	4	0	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	46	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2384	False	NA	NA	False	NA	NA	NA	38533928	38478047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
90875	chr9	+	2641	8	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	1	759	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	64.126469430592	294	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAATAAATAGG	1792	False	NA	NA	False	NA	NA	NA	119939471	119954329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949072_119949322_119949503_119949738_119949914_119951159_119951327_119952707
90876	chr8	+	3231	14	NNC	ENSMUSG00000060038.15	novel	1097	7	NA	NA	-86	5530	intron_retention	FALSE	non_canonical	0	0	junction_1	128.530842659624	92	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGCTCGAGTGTAACATT	NA	False	NA	NA	False	NA	NA	NA	85798843	85807321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85799436_85799576_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562_85801972_85802450_85802565_85802650_85802914_85806209_85806339_85806420_85806855_85806941_85807063_85807141
90877	chr2	+	4293	6	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	-52	2922	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_3	118.732640836461	466	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGGGTCAGACAGAAACA	NA	False	NA	NA	False	NA	NA	NA	177401028	177415187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
90878	chr17	-	4271	13	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-275	3801	intron_retention	TRUE	non_canonical	0	0	junction_1	4629.23658438048	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCAGCCAGCCAGTCAG	NA	False	NA	NA	False	NA	NA	NA	45882783	45874899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45874992_45875502_45875697_45875847_45876000_45877228_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
90879	chr2	+	3069	12	ISM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	28578	13	-9	-13	3prime_fragment	FALSE	canonical	3	120	junction_2	17.093810198649	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGTTGGTCACTGTGGT	NA	False	NA	NA	False	NA	NA	NA	150657232	150673665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
90880	chr1	+	1455	2	FSM	ENSMUSG00000026698.9	ENSMUST00000160881.2	704	2	1	-752	1	-706	multi-exon	FALSE	canonical	0	0	junction_1	0	115	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATTGTCTAGTATTTTA	NA	False	NA	NA	False	NA	NA	NA	161796868	161799193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_161796939_161797808
90881	chr17	+	4216	11	NNC	ENSMUSG00000024101.16	novel	901	5	NA	NA	-7079	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	39.5182236442885	7	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGGGAGCTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	66411460	66426443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_66413932_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
90882	chr15	+	4550	20	NNC	ENSMUSG00000022201.17	novel	4850	20	NA	NA	-2	-239	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	202.79655621656	653	56	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATGACTTACTTGTGTT	38	False	NA	NA	False	NA	NA	NA	12117914	12185530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154648_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166314_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
90883	chr13	+	4854	5	Fusion	ENSMUSG00000114777.2_ENSMUSG00000114426.2	novel	1561	3	NA	NA	-6312	1777	intron_retention	FALSE	canonical	1	3	junction_3	35.6545929720141	237	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAATTGGTACCAGCAGA	NA	False	NA	NA	False	NA	NA	NA	66667730	66725752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66667826_66674049_66674177_66674374_66674436_66720982_66721110_66721308
90884	chr11	+	4945	3	Intergenic	novelGene_2303	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	975	6	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	57433774	57450922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57433975_57446083_57450386_57450479
90885	chr14	-	2720	19	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-32	-31	combination_of_known_junctions	FALSE	canonical	3	64	junction_10	111.61232785134	8	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CCAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	47655696	47625275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643323_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
90886	chr11	+	2571	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	75	18	75	-18	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	852	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTTCTAAAGCTGCAGA	NA	False	NA	NA	False	NA	NA	NA	101207113	101214345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
90887	chrX	+	4508	7	NIC	ENSMUSG00000041649.14	novel	4407	8	NA	NA	7	-104	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	50.56349144063	300	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTCCTCGTTGTGATAG	NA	False	NA	NA	False	NA	NA	NA	152142615	152179024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_152142706_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
90888	chr4	+	2774	10	Antisense	novelGene_ENSMUSG00000083642.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	83	52	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGAAGAAAGATGAAACCG	NA	False	NA	NA	False	NA	NA	NA	147743973	147894262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147744362_147758541_147758735_147759068_147759701_147839216_147839889_147840548_147840693_147842158_147842266_147860152_147860285_147891545_147891642_147893157_147893432_147894126
90889	chr10	-	1834	15	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-18	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	635.230827401845	15	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCCCTTAATGTCTTAC	NA	False	NA	NA	False	NA	NA	NA	116899686	116886913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891147_116893048_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
90890	chr19	+	5034	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	413	8	11	-8	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	37	176	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1480	False	NA	NA	False	NA	NA	NA	44282525	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
90891	chr10	-	3664	11	NNC	ENSMUSG00000061032.10	novel	1984	13	NA	NA	11	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	290.197191578416	10	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCACATGGCTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	78248813	78236225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78236819_78237683_78237803_78238421_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78246858_78247237_78247321_78248653
90893	chr18	-	3347	4	NNC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	-4	1652	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	114.170437893918	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTAGCTTGGAATTGC	NA	False	NA	NA	False	NA	NA	NA	24153381	24145329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_24147743_24150340_24150489_24150724_24151226_24153096
90894	chrX	+	4283	8	NNC	ENSMUSG00000041649.14	novel	4752	7	NA	NA	-32	-4	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	63.8435587980495	4	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTCTTTTTTTGAGATT	3953	False	NA	NA	False	NA	NA	NA	152020429	152178789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_152020503_152020946_152021089_152091847_152091921_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
90895	chr14	-	3620	18	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11277	42729	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	33	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTTTGAGGGTCCAAAG	NA	False	NA	NA	False	NA	NA	NA	19861846	19818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19819004_19828061_19828212_19828803_19829049_19829601_19829804_19831200_19831431_19839734_19839882_19840344_19840475_19841575_19841717_19847223_19847349_19848461_19848712_19852403_19852626_19853114_19853287_19855365_19855493_19855907_19856081_19857992_19858159_19860051_19860170_19861019_19861133_19861251
90896	chr13	+	4378	4	FSM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	-13	40	-13	-40	multi-exon	FALSE	canonical	3	44	junction_1	12.0277457017791	177	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGTATGGATAAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	21546976	21556419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_21547043_21547749_21548222_21550784_21550927_21552721
90897	chr15	-	2151	16	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-1006	315	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	830.571754877325	5	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGTTAAAATAAAATTTACT	6317	False	NA	NA	False	NA	NA	NA	11393362	11383775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392112_11392317_11392436_11392872_11392995_11393242
90898	chr19	+	2541	13	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	471.346733366802	66	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGGGTCCGTTTCTTTT	848	False	NA	NA	False	NA	NA	NA	6413965	6427225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414080_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424772_6424929_6426325
90899	chrX	-	4938	22	NIC	ENSMUSG00000031095.16	novel	3090	23	NA	NA	1	1657	combination_of_known_junctions	FALSE	non_canonical	3	26	junction_5	379.671704469273	1	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTCTGGGGAAGATATT	NA	False	NA	NA	False	NA	NA	NA	37665059	37620493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37664956
90900	chr7	+	1149	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	44	11	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396438	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_51397339_51397388
90902	chr15	+	4408	35	NNC	ENSMUSG00000022191.17	novel	4519	35	NA	NA	15	-44	intron_retention	FALSE	canonical	3	79	junction_17	136.664317995404	820	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGGTTGTTGTCTTAATG	95	False	NA	NA	False	NA	NA	NA	12824990	12935332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881810_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
90903	chr5	+	3190	9	NNC	ENSMUSG00000029165.18	novel	3466	15	NA	NA	-723	851	intron_retention	FALSE	non_canonical	0	0	junction_7	16.7812209031405	393	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGGTCTTAGGCGGAGCC	1793	False	NA	NA	False	NA	NA	NA	31050824	31065160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31051855_31052340_31052544_31053109_31053325_31060396_31060553_31062046_31062160_31062452_31062500_31062974_31064110_31064741_31064883_31065010
90904	chr4	-	643	5	NNC	ENSMUSG00000047675.16	novel	860	6	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5601.47495642889	6	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGCTGTCTAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	117013281	117011035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117011185_117011495_117011617_117011834_117012070_117012763_117012875_117013254
90905	chr7	-	826	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	995	0	2	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACAAGGCCTGACTGG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
90906	chr8	-	2969	13	NIC	ENSMUSG00000031591.15	novel	2773	14	NA	NA	62	-4	intron_retention	FALSE	canonical	3	999	junction_6	172.755828813065	15	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGTCAGCAGTCATGCAT	7563	False	NA	NA	False	NA	NA	NA	41827748	41793701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807955_41813289_41813337_41827546
90907	chr8	+	4190	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-18	-764	multi-exon	FALSE	canonical	0	0	junction_2	661.868869187848	12	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAGGTGTGGCACCATT	NA	False	NA	NA	False	NA	NA	NA	19834743	20045124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030839_20035371_20035419_20035860_20036160_20039783_20039904_20041811
90908	chr13	+	4707	3	FSM	ENSMUSG00000021360.17	ENSMUST00000067778.8	4038	3	35	-704	-14	704	multi-exon	FALSE	canonical	3	123	junction_1	29	209	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTTCTGCTGTGAATACA	NA	False	NA	NA	False	NA	NA	NA	41071111	41115072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41072278_41107051_41107148_41111627
90909	chr2	+	5004	8	Fusion	ENSMUSG00000078875.11_ENSMUSG00000078879.11	novel	1749	4	NA	NA	-4	2786	multi-exon	FALSE	canonical	0	0	junction_2	60.4351566827232	6	51	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	176362310	176707366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_176362453_176370328_176370456_176526998_176527060_176692040_176692128_176696293_176696349_176701473_176701601_176701806_176701868_176703022
90910	chr1	+	5718	8	NNC	ENSMUSG00000037216.6	novel	812	2	NA	NA	-12	14154	intron_retention	FALSE	non_canonical	0	0	junction_2	0.349927106111883	1095	94	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACGCCGCTGCGCCTGCG	NA	False	NA	NA	False	NA	NA	NA	37911442	37929463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37911932_37913944_37918443_37918635_37918704_37920015_37920129_37920778_37920867_37921642_37921780_37924295_37924397_37929239
90911	chr11	-	3565	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	86	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1071.55122447164	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8222	False	NA	NA	False	NA	NA	NA	50216414	50185293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50186302_50186429_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
90912	chr13	-	9286	25	Intergenic	novelGene_1381	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGAGAGAGGAGCCGCTC	NA	False	NA	NA	False	NA	NA	NA	55463272	55359734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55359805_55361013_55361130_55361872_55361964_55381707_55381842_55386500_55386672_55393326_55395889_55408154_55408376_55409354_55409625_55411142_55411254_55416258_55416335_55424333_55424448_55425336_55425487_55430469_55430593_55437864_55438067_55438941_55439122_55441368_55441522_55443790_55444004_55446374_55446483_55447499_55447772_55449537_55449657_55450651_55450790_55454744_55454854_55458147_55458353_55459759_55459794_55459928
90913	chr14	+	1945	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	10	2788	10	1272	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	641	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359920	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
90914	chr2	+	8785	7	Intergenic	novelGene_2732	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	64	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGAGCTGGTTACTGTTA	NA	False	NA	NA	False	NA	NA	NA	151021366	151183124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_151022125_151022172_151022630_151050723_151053892_151176104_151176425_151176590_151177331_151179701_151182880_151182960
90915	chr13	+	9395	7	Fusion	ENSMUSG00000114685.2_ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6318	3395	multi-exon	TRUE	non_canonical	0	0	junction_4	26.6859305419333	18	196	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTAGTTGTCCTGTCTA	NA	False	NA	NA	False	NA	NA	NA	66667724	66685681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66667826_66674049_66674177_66674374_66674436_66676027_66676237_66676321_66676529_66676948_66681460_66681502
90916	chr12	+	8308	49	NNC	ENSMUSG00000018707.14	novel	14342	77	NA	NA	-6268	-26	intron_retention	TRUE	non_canonical	0	0	junction_11	147.790321627185	473	95	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCTCCCGCCTCTTGCCG	8927	False	NA	NA	False	NA	NA	NA	110600689	110633353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110600813_110601934_110602179_110602328_110602513_110602759_110602973_110603539_110603779_110603929_110604087_110605172_110605401_110606167_110606399_110606579_110606721_110606932_110607167_110607252_110607460_110607533_110607658_110608444_110608611_110609556_110609721_110612627_110612758_110614694_110614829_110615433_110615549_110615648_110615811_110615895_110616111_110616207_110616413_110617924_110618099_110618184_110618305_110618507_110618629_110620583_110620780_110621217_110621320_110621842_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
90917	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1860	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
90918	chr13	-	5124	8	Fusion	ENSMUSG00000113450.2_ENSMUSG00000074865.12_ENSMUSG00000113841.2	novel	2439	5	NA	NA	-490	-150	intron_retention	TRUE	non_canonical	0	0	junction_1	28.5228157868076	20	75	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTAGAGCTTATTCTAT	NA	False	NA	NA	False	NA	NA	NA	62668755	62597280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62599173_62600616_62602024_62602273_62602596_62635397_62635409_62665386_62665821_62666071_62666545_62667985_62668047_62668231
90919	chr2	-	5015	4	FSM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	55	3	-29	-3	multi-exon	FALSE	canonical	3	532	junction_3	46.1808040928985	2	162	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCGGGCTTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	168609066	168590254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_168592381_168594373_168594661_168596353_168598721_168608831
90920	chr4	+	4607	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	-42	1660	multi-exon	FALSE	non_canonical	0	0	junction_2	65.6981346611849	76	76	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCCAGGTTCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	147216452	147419851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216568_147219028_147219122_147249797_147249844_147321238_147321290_147409230_147409335_147413438_147413566_147415724_147418252_147418307
90921	chr6	+	1862	5	NNC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	1377	2555	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	37	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAACAAGGGGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	124681344	124683936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124681616_124681894_124682048_124682116_124682180_124682477_124682620_124682703
90922	chr13	+	790	1	Genic_Genomic	ENSMUSG00000113081.2	novel	NA	NA	NA	NA	1981	278	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATGGCCCGTTGTTTAT	NA	False	NA	NA	False	NA	NA	NA	62422555	62423345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_62422600_62423300
90923	chr17	-	2389	7	NNC	ENSMUSG00000024327.17	novel	2320	7	NA	NA	-6	1	intron_retention	FALSE	canonical	0	0	junction_1	222.344639892418	1	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCAGCCTTTGTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	34250662	34247245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_34248043_34248479_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
90924	chrM	+	1609	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-841	16	-841	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	23	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGATGAGGATCTTACTC	-11	True	NA	NA	False	NA	NA	NA	7765	9374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9400
90925	chr2	-	3009	10	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.314269680527354	49	70	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGTCCCTGGACTCGG	5836	False	NA	NA	False	NA	NA	NA	162926608	162910166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162910243_162914580_162914834_162916300_162916722_162917552_162917696_162919706_162919807_162921511_162921627_162922636_162922742_162922947_162923067_162924467_162924612_162925075
90926	chrX	-	3144	6	ISM	ENSMUSG00000031389.18	ENSMUST00000128329.2	2367	15	-36	17561	-36	-10096	5prime_fragment	FALSE	canonical	3	1058	junction_5	27.4328270508163	25	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGTGGGGTATGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	72965512	72960479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
90927	chr4	+	935	1	FSM	ENSMUSG00000082062.2	ENSMUST00000118517.2	552	1	-210	-173	-210	173	mono-exon	FALSE	NA	NA	NA	NA	NA	28	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	125397870	125398805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_125397900_125398800
90928	chr5	+	386	1	Intergenic	novelGene_942	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	60	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197789	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
90929	chr8	+	2354	4	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2986.28669457944	5	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATGTTCTGTTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	57965005	57969035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965040_57965608_57965783_57966095_57966206_57966999
90930	chr7	+	1137	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	106	-11	106	11	mono-exon	FALSE	NA	NA	NA	NA	NA	5	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396500	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
90931	chr13	+	3192	5	Fusion	ENSMUSG00000097906.2_ENSMUSG00000090659.10	novel	3258	4	NA	NA	1	1797	multi-exon	FALSE	canonical	1	1	junction_3	15.1657508881031	63	45	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCTCATACTTGACTGTG	NA	False	NA	NA	False	NA	NA	NA	67927873	67961116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_67927939_67931908_67932036_67932512_67932609_67949963_67950053_67958301
90932	chr4	-	7007	19	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	30558	39	826	-39	3prime_fragment	FALSE	canonical	3	84	junction_14	29.7404928267883	439	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCACGTGTTAAGAATAAAT	NA	False	NA	NA	False	NA	NA	NA	133450364	133406357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109_133420220_133420315_133420462_133421068_133421382_133421973_133422142_133422882_133422973_133423226_133423468_133446847_133446965_133447860_133448311_133450149
90934	chr7	-	3001	7	ISM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	723	5	723	-5	3prime_fragment	FALSE	canonical	3	225	junction_3	18.4992492340155	333	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCACTTGCTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	125995186	125982030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113
90935	chr1	-	6612	15	Antisense	novelGene_ENSMUSG00000026483.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	311	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGACTCCAGGGAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	151597679	151446650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_151446810_151447191_151447334_151512152_151512283_151517175_151517309_151520623_151520738_151525026_151525194_151565268_151565389_151571442_151571546_151571875_151572037_151575857_151576046_151579450_151579613_151581735_151581847_151584845_151584956_151591410_151591521_151592977
90936	chr3	+	5137	5	FSM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	-41	6	-41	-6	multi-exon	FALSE	canonical	3	260	junction_3	82.6211232070831	421	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTAATTGGTGTTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	16237334	16271195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257989_16259589_16268118
90937	chr2	-	4398	10	Antisense	novelGene_ENSMUSG00000033943.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGTTCGCACACCGTGT	NA	False	NA	NA	False	NA	NA	NA	119762410	119727765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119728457_119733084_119734213_119746909_119747853_119750104_119750184_119750290_119750387_119751844_119751978_119752217_119752328_119753911_119754563_119756854_119757203_119762191
90938	chr11	-	6256	2	Intergenic	novelGene_2448	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	171	60	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAATCGTGGTCTCGCTG	NA	False	NA	NA	False	NA	NA	NA	88787792	88781079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_88783913_88784369
90939	chr9	-	1642	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	74	604	26	-604	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	18	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCCTCCCTGCCTTTTA	NA	False	NA	NA	False	NA	NA	NA	100916877	100864688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
90940	chr10	+	4652	24	NNC	ENSMUSG00000040054.18	novel	8369	30	NA	NA	28	-4910	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	110.2961300087	5	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCCAAAGAGAAGACGTACG	NA	False	NA	NA	False	NA	NA	NA	127928679	127960261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127928720_127932248_127932393_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203
90941	chr4	-	3160	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	-62	-1660	-4	0	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	20	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACTGCATATGTTAA	-32	True	NA	NA	False	NA	NA	NA	59783870	59769636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
90942	chr11	-	1797	6	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1347.16909109436	36	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120472455	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120470183_120470337_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
90943	chrX	-	4250	21	NIC	ENSMUSG00000036916.14	novel	4045	20	NA	NA	-75	-6	combination_of_known_junctions	FALSE	canonical	0	0	junction_19	26.1914108058348	473	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTACAGATTGCATCATC	NA	False	NA	NA	False	NA	NA	NA	47683456	47630508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47682390_47682476_47683240
90944	chr12	+	4634	2	Intergenic	novelGene_4365	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	23	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	68604960	68610270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68609385_68610060
90945	chr3	+	3454	17	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	848	2646	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	633.714147777805	10	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGCCGCTGTGCACCGC	NA	False	NA	NA	False	NA	NA	NA	90384311	90398332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388843_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765_90396510_90396626_90396903_90397462_90397580_90397854_90397902_90398138
90946	chr1	-	409	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	278	-6	278	6	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	24654368	24653959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24654000_24654400
90947	chr17	+	6413	2	Intergenic	novelGene_111	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	71	24	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACGCCAATCCTTTAGTCC	NA	False	NA	NA	False	NA	NA	NA	27500560	27507025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_27500752_27500803
90948	chr7	-	2251	1	Intergenic	novelGene_2918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAAAGTAGTTTGCA	NA	False	NA	NA	False	NA	NA	NA	29625749	29623498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_29623500_29625700
90949	chr9	+	2308	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	-470	0	-470	0	multi-exon	FALSE	canonical	3	72	junction_1	0	188	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	21866580	21869560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21867301_21867972
90950	chr1	-	3590	20	Fusion	ENSMUSG00000041859.11_ENSMUSG00000041872.10	novel	3031	17	NA	NA	16	-16	multi-exon	TRUE	canonical	0	0	junction_2	947.565318720033	36	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTTAATTCAAAAATATT	NA	False	NA	NA	False	NA	NA	NA	20890468	20847385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_20848229_20849514_20849736_20854396_20854484_20873715_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
90951	chr14	-	8318	44	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	-14936	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_43	138.767206067279	56	54	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTCCCTGTCATTCTT	NA	False	NA	NA	False	NA	NA	NA	14599968	14518187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547026_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596411_14599895
90953	chr6	-	2104	11	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1682.35336359518	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9298	False	NA	NA	False	NA	NA	NA	128415611	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407680_128407763_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
90954	chr4	-	1131	6	NNC	ENSMUSG00000055401.15	novel	811	6	NA	NA	-24	-3	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	346.367665927407	7	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTGGTTTGAGGGCT	NA	False	NA	NA	False	NA	NA	NA	148236406	148230247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148230612_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
90956	chr6	-	2799	12	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	3172.16674652651	6	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446846	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444274_51444370_51444407_51446650
90957	chr10	-	2982	13	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-25	0	intron_retention	FALSE	canonical	3	1936	junction_7	250.950014389763	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTTAATGTCTTACTGA	NA	False	NA	NA	False	NA	NA	NA	116899693	116886910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893824_116894002_116894104_116896552_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
90958	chr11	-	3428	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	42	0	-3	0	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	780	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	95201030	95165084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
90959	chr14	-	4258	8	Intergenic	novelGene_520	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	205	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCAGCCACCGGGCGGTC	NA	False	NA	NA	False	NA	NA	NA	14926448	14810844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_14811250_14902727_14902847_14907121_14907270_14917008_14917147_14917878_14918040_14918989_14919121_14919796_14919981_14923476
90960	chr4	-	2989	7	NNC	ENSMUSG00000047675.16	novel	860	6	NA	NA	0	2509	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4720.3273073897	73	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGGCAGATTTGGGATT	NA	False	NA	NA	False	NA	NA	NA	117013281	117008514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117009180_117009400_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
90961	chr1	-	2899	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	645.348933596198	130	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTCTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	20890484	20873195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883266_20884625_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
90962	chr2	+	5755	21	NNC	ENSMUSG00000027624.21	novel	820	5	NA	NA	11872	-9	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	33.6114191905073	35	89	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGCTGAACCATGGACT	NA	False	NA	NA	False	NA	NA	NA	156274903	156385123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156275015_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
90963	chr8	-	2905	10	Fusion	ENSMUSG00000053226.8_ENSMUSG00000003813.16	novel	2074	9	NA	NA	-1	1706	multi-exon	FALSE	non_canonical	0	0	junction_1	542.113718651924	33	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCATTGCGAGCGCCGCC	NA	False	NA	NA	False	NA	NA	NA	85567271	85558941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_-_85559268_85560734_85562304_85562383_85562549_85564088_85564220_85564317_85564355_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
90965	chr4	-	1193	8	NIC	ENSMUSG00000041459.16	novel	6425	7	NA	NA	1	-2	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	477.117792327117	83	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTTTGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	148711226	148701321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148701501_148702022_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
90966	chr9	-	3137	5	FSM	ENSMUSG00000032515.9	ENSMUST00000035101.9	2906	5	-231	0	-16	0	multi-exon	FALSE	canonical	1	1	junction_4	11.4972822875669	235	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTTCTTGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	119813740	119800228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_119802278_119802429_119802745_119803219_119803480_119806067_119806312_119813471
90967	chr17	-	882	2	Genic_Genomic	ENSMUSG00000058542.4	novel	552	1	NA	NA	-207	173	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	6182887	6181955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_6182516_6182565
90968	chr1	-	676	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	109	-2	109	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24652943	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24652900
90969	chr17	-	4720	4	Intergenic	novelGene_161	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	579	10	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGACCGGAAGCGTCATAT	NA	False	NA	NA	False	NA	NA	NA	37023472	36798377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_36798448_36798946_36801394_36975385_36975487_37021370
90970	chr2	-	2783	10	Antisense	novelGene_ENSMUSG00000093242.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGCGGGGCCAGTCAC	NA	False	NA	NA	False	NA	NA	NA	75497299	75489610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_75489666_75491807_75491932_75492013_75492160_75492237_75492450_75492829_75492921_75493002_75493099_75493186_75493269_75493913_75494057_75495369_75495644_75495739
90971	chr4	+	5089	2	Intergenic	novelGene_1877	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11970	68	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820662	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66822501_66822584
90972	chr8	-	4517	6	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1835	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGCTGGGCGCCTGGCCAT	NA	False	NA	NA	False	NA	NA	NA	20045122	20016492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20016683_20030544_20030923_20035859_20036158_20039781_20039901_20040761_20040983_20041811
90973	chr4	+	873	5	NNC	ENSMUSG00000028936.16	novel	2051	4	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2335.66097443529	159	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTCACTGTGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	152410318	152418525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736_152417094_152418273
90974	chrM	+	1018	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-58	-3	-58	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	269	False	NA	51	True	NA	NA	NA	2692	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
90975	chr10	-	6256	12	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	531	846	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.8524327167482	31	160	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGTTAACCTCAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	62715262	62647554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62649181_62649356_62649604_62650214_62650343_62652162_62652253_62654719_62654814_62655313_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676154_62700586_62700641_62713930
90976	chr14	+	5456	22	NNC	ENSMUSG00000045691.15	novel	2830	2	NA	NA	-1	7309	intron_retention	FALSE	non_canonical	0	0	junction_2	7.87947763499926	321	14	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGGACATCCCCACTACG	NA	False	NA	NA	False	NA	NA	NA	55332239	55343752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55333464_55334836_55336618_55336695_55336796_55337158_55337323_55337875_55338026_55338106_55338235_55338527_55338633_55338851_55338977_55339051_55339145_55339767_55339890_55339963_55340018_55340096_55340239_55340392_55340505_55340656_55340714_55340863_55340967_55341270_55341348_55341814_55341914_55342033_55342115_55342286_55342384_55342483_55342629_55342763_55342887_55343378
90977	chr1	-	2841	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	183	-601	183	601	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	13558	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTAGTTTAGCTGTGGAA	4638	False	NA	NA	False	NA	NA	NA	55127000	55116392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
90978	chr4	-	3109	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-1685	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	527.600405136311	6	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTGTCTTGTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	141329028	141303373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141328877
90979	chr11	+	2733	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	754.535489924467	5	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	NA	NA	NA	20151438	20176856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20175028_20175114
90980	chr5	+	2535	11	FSM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-144	-580	33	-12	multi-exon	FALSE	canonical	3	25	junction_1	36.4367945900843	147	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCACAAAGAATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	108777730	108795117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
90981	chr1	+	3987	15	NIC	ENSMUSG00000026483.14	novel	4010	15	NA	NA	-46	-3	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_1	53.6363416244727	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAGACTTTACCAATGT	NA	False	NA	NA	False	NA	NA	NA	151446890	151595090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_151447017_151447193_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
90982	chr6	-	4102	14	NIC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-62	-3	combination_of_known_splicesites	FALSE	canonical	1	5	junction_12	147.044814647756	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCACAGCTTCTGTAGTA	NA	False	NA	NA	False	NA	NA	NA	49191700	49062159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49190200_49190262_49191230
90983	chr7	+	1758	1	Intergenic	novelGene_2980	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	61	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTCAGCCAGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	75424284	75426042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_75424300_75426000
90984	chr19	-	1683	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCAACAAGACCGTTTT	NA	False	NA	NA	False	NA	NA	NA	22701743	22699846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765
90986	chr2	+	4580	14	FSM	ENSMUSG00000026718.18	ENSMUST00000102960.11	5000	14	-3	423	-3	-423	multi-exon	TRUE	canonical	3	181	junction_8	24.7443735759998	349	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGAGGTCTTTCATGGGT	4679	False	NA	NA	False	NA	NA	NA	14078905	14154022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
90987	chr6	+	6128	15	FSM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	54	4	12	-4	multi-exon	FALSE	canonical	3	310	junction_10	29.4144383538675	47	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACGTCTGGTGTGTTTCG	NA	False	NA	NA	False	NA	NA	NA	91661087	91736043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
90988	chr1	-	443	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	342	-2	342	2	mono-exon	FALSE	NA	NA	NA	NA	NA	5	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24652710	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24652700
90989	chr4	-	1231	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-157	-72	157	mono-exon	FALSE	NA	NA	NA	NA	NA	19	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCAATAAAGTTCGCTGCA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
90990	chr7	+	487	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	98	524	-13	-65	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	34	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGATAAGCCCATCTCAAG	NA	False	NA	NA	False	NA	NA	NA	28050174	28052056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
90991	chr9	-	4108	18	FSM	ENSMUSG00000032122.16	ENSMUST00000115068.10	5943	18	254	1581	-70	1150	multi-exon	FALSE	canonical	3	62	junction_1	7.12469267230106	202	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGCAATAACTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	37166780	37140461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_37142953_37144605_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
90992	chr17	-	1253	7	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3791.25325585089	1	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAATGTCTCCTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	36149124	36145702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146001_36146054_36146216_36146256_36146336_36146382_36146511_36146571_36146834_36147539_36147629_36148888
90993	chr9	+	5804	17	NIC	ENSMUSG00000032512.8	novel	3845	19	NA	NA	-1	-2	intron_retention	FALSE	canonical	3	235	junction_15	24.527726657805	6	86	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTCAGTGTGCTGGACAT	NA	False	NA	NA	False	NA	NA	NA	119723942	119755650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119749711_119751683_119751761_119753143_119753334_119753774
90994	chr11	-	4254	3	Antisense	novelGene_ENSMUSG00000000275.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	76	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATCCAGTGATTGGCCAG	NA	False	NA	NA	False	NA	NA	NA	88911119	88906438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_88906644_88907020_88910658_88910707
90995	chr2	+	5318	11	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	54	-3	intron_retention	FALSE	canonical	3	39	junction_2	55.0644168224816	15	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTGTTGTTTTATTCA	NA	False	NA	NA	False	NA	NA	NA	180367109	180384070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180367245_180373672_180373801_180374225_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
90996	chr3	-	4068	8	FSM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	147	2316	147	818	multi-exon	FALSE	canonical	3	72	junction_4	79.9721890434929	73	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCATAGCCTACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	102111862	102063214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
90997	chr7	-	7393	6	Intergenic	novelGene_2913	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	105	93	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	29451204	29342755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_29343017_29345924_29348128_29445615_29446972_29447360_29448743_29448914_29449513_29449611
90998	chr17	+	8576	19	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	85	40773	intron_retention	FALSE	non_canonical	0	0	junction_3	1408.52555887353	165	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGGCGTCCCGAAGCCGC	NA	False	NA	NA	False	NA	NA	NA	6697595	6744468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6697638_6699278_6699321_6702406_6708718_6708811_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836_6716919_6719271_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6744415
90999	chr16	-	2202	4	FSM	ENSMUSG00000022789.16	ENSMUST00000230958.2	2913	4	720	-9	720	1	multi-exon	FALSE	canonical	3	945	junction_3	158.394724940223	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTGAATTCTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	16134590	16130100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465
91000	chr1	-	8107	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9483	1507	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_41	270.908748968537	679	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGTGGTGCTGACAGAT	NA	False	NA	NA	False	NA	NA	NA	84827720	84700477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84822070_84822113_84827643
91001	chr7	-	5025	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	1041	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTTTGAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	118454907	118441439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
91002	chrM	+	1616	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-3	-68	-3	68	mono-exon	FALSE	NA	NA	NA	NA	NA	1788	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	-2	True	NA	NA	False	NA	NA	NA	5324	6940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
91003	chr4	+	8273	2	Intergenic	novelGene_1896	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	14	56	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	81822257	81964637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_81826410_81960516
91004	chr1	-	4062	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	7	143	7	-143	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	482	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCATCAAACCTCAAATG	NA	False	NA	NA	False	NA	NA	NA	191307649	191269619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
91005	chr4	+	4866	1	Intergenic	novelGene_1888	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820969	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66821000_66825800
91006	chrM	+	2208	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-384	0	384	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAACCAACAAACCCACTA	-4	True	NA	4	True	NA	NA	NA	11741	13949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13900
91007	chr17	-	2283	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	7	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149101	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145525_36145793_36146932_36147054_36147166_36147519_36147629_36148888
91008	chr17	-	2312	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	0	-271	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	717.8895179622	3	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTGTCTCGAGGAATCTAA	4817	False	NA	NA	False	NA	NA	NA	25179619	25161714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25162698_25162742_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
91009	chr7	-	2895	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.188852574577511	15	17	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCGCGCACTTTGGCGGG	9275	False	NA	NA	False	NA	NA	NA	13045349	13012784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016469_13019182_13019317_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029396_13030242_13030321_13030645_13030720_13032659_13032746_13032956_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
91011	chr11	-	3966	2	Intergenic	novelGene_2310	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	370	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446780_57448104
91012	chr7	+	5053	17	NNC	ENSMUSG00000030494.14	novel	689	2	NA	NA	-20744	4520	intron_retention	FALSE	non_canonical	0	0	junction_1	48.566803219895	8	14	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCCCACAGCCCGGGAG	1207	False	NA	NA	False	NA	NA	NA	35057962	35096234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35058174_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179_35092515_35094397_35094553_35094661_35094801_35095636
91013	chr8	-	3629	5	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCGTTGCAGCATCTGCCC	NA	False	NA	NA	False	NA	NA	NA	20045121	20030847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20030923_20035859_20036158_20039781_20039902_20041809_20042914_20043089
91014	chr7	-	5305	11	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	84	3057	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_10	266.085625316363	1060	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGCCGTGGATAATTTG	NA	False	NA	NA	False	NA	NA	NA	132724811	132586234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724715
91016	chr7	+	2081	5	NNC	ENSMUSG00000030494.14	novel	3508	15	NA	NA	655	-5	intron_retention	FALSE	canonical	3	11	junction_1	46.2952481362828	32	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTAATTTTTCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	35082644	35091705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35082820_35083393_35083471_35084062_35084210_35084751_35084908_35090179
91017	chr4	+	1119	7	NIC	ENSMUSG00000029003.12	novel	1535	8	NA	NA	-227	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	247.779079468429	10	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	NA	False	NA	NA	NA	148224953	148230156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_148225292_148225371_148225491_148227442_148227515_148228720_148228816_148229110_148229185_148229560_148229654_148229828
91018	chr12	-	1962	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	32	-885	32	885	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	342	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAAACCTTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	69629852	69623516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
91019	chrX	-	7371	19	NNC	ENSMUSG00000038344.15	novel	3715	11	NA	NA	92	17779	intron_retention	FALSE	non_canonical	0	0	junction_1	87.2940256465484	25	101	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCGGGATCCAGCTCCTC	NA	False	NA	NA	False	NA	NA	NA	161612358	161544135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_161544290_161544567_161544714_161551845_161551992_161552754_161552932_161554046_161554165_161555200_161555362_161556191_161556317_161556434_161556513_161557546_161557624_161558729_161558789_161560766_161560878_161561342_161565321_161567317_161567411_161569612_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
91020	chr6	+	2363	3	FSM	ENSMUSG00000003031.15	ENSMUST00000003115.9	2393	3	22	8	22	-8	multi-exon	FALSE	canonical	2	2	junction_2	1.5	13	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAGTTATTTATTGAGTGC	NA	False	NA	NA	False	NA	NA	NA	134897385	134902468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134898358_134898918_134899047_134901205
91021	chr4	+	3444	10	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-4	3324	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	116.775927673261	276	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTGTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	147576869	147601267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578932_147592042_147592098_147595209_147595337_147596801_147597378_147597462_147597596_147597930_147598133_147598801_147599093_147599343_147599761_147599862
91022	chr4	-	4190	22	Antisense	novelGene_ENSMUSG00000028405.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCGCTCCTCCCACTGAG	NA	False	NA	NA	False	NA	NA	NA	40199006	40143483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40143541_40145162_40145254_40163715_40163845_40164607_40164778_40167053_40167190_40175662_40175733_40175839_40176025_40176494_40176634_40177776_40177949_40178970_40179072_40180169_40180287_40181380_40181541_40182801_40182939_40183566_40183651_40184898_40185057_40186314_40186439_40188163_40188270_40189342_40189486_40190735_40190885_40193738_40193859_40196241_40196429_40197551
91024	chrM	-	822	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGACCAAACCTTTGTGT	5495	False	NA	NA	False	NA	NA	NA	907	85	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_100_900
91025	chrX	+	2063	6	FSM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	-23	5	17	-5	multi-exon	FALSE	canonical	3	69	junction_5	7.30479294709987	199	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTGGATTGCCATTTA	NA	False	NA	NA	False	NA	NA	NA	7744517	7749666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486_7747860_7748311_7748489_7748592
91026	chrX	+	4355	8	NIC	ENSMUSG00000041649.14	novel	4752	7	NA	NA	20	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_2	62.9619256506077	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTTTTGAGATTTTCA	4005	False	NA	NA	False	NA	NA	NA	152020481	152178793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_152020508_152020946_152021089_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
91027	chr4	+	5040	20	NIC	ENSMUSG00000028580.16	novel	4017	22	NA	NA	0	-5	combination_of_known_junctions	FALSE	canonical	3	63	junction_3	146.707861670397	11	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGAATTTGTACTGCTCT	NA	False	NA	NA	False	NA	NA	NA	130390676	130508868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
91029	chr11	-	5168	16	NNC	ENSMUSG00000086725.2	novel	2203	2	NA	NA	-47224	-1923	intron_retention	TRUE	non_canonical	0	0	junction_1	0	301	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGTGAGCCGGCCAAGGA	1959	False	NA	NA	False	NA	NA	NA	29170782	29122831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_29123447_29124671_29124727_29132444_29132546_29137950_29138573_29144570_29144649_29146171_29146290_29147091_29147210_29148792_29148925_29150700_29150800_29152862_29152908_29155544_29155705_29159316_29159485_29161113_29161254_29161604_29161790_29163591_29163795_29168453
91030	chr4	-	2762	4	NNC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	5650	-620	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_3	114.601725796585	6	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAATAACCCAGACCCTTA	2960	False	NA	NA	False	NA	NA	NA	58542751	58435874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58437635_58486476_58487225_58504621_58504782_58542657
91031	chr7	+	3369	15	NNC	ENSMUSG00000030494.14	novel	689	2	NA	NA	19198	-2	intron_retention	FALSE	canonical	3	27	junction_1	23.30422139214	9	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTCTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	35052952	35091712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35053058_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
91033	chr2	-	6114	18	Fusion	ENSMUSG00000014867.10_ENSMUSG00000015790.17	novel	1173	9	NA	NA	-61	-6	intron_retention	FALSE	non_canonical	0	0	junction_8	318.563710064788	385	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAACCATGGCTCAGTCT	NA	False	NA	NA	False	NA	NA	NA	26823456	26803400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268_26806514_26806714_26806876_26807443_26809068_26809203_26809369_26809736_26811194_26811350_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
91034	chr1	+	4218	10	NNC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	9	1829	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	89.0914358994022	285	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGGATACAGAGAAGGTC	NA	False	NA	NA	False	NA	NA	NA	75187500	75194079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457_75193237_75193469_75193617_75193851
91035	chr2	+	4462	1	Genic_Genomic	ENSMUSG00000084762.2	novel	NA	NA	NA	NA	-1323	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	11	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACTTTGGCCAACACTTA	NA	False	NA	NA	False	NA	NA	NA	135489503	135493965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_135489500_135494000
91037	chr16	+	5160	5	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	771	intron_retention	FALSE	non_canonical	0	0	junction_1	719.609268978659	9	88	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACATTGTAGCTGTCTTC	6054	False	NA	NA	False	NA	NA	NA	22926508	22933657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926594_22927449_22927602_22927869_22928010_22928734_22933054_22933193
91038	chr9	-	1461	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4740.55454432866	605	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78385938_78386312_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
91040	chr2	-	5105	10	ISM	ENSMUSG00000082163.3_ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	49	-1973	4	881	intron_retention	FALSE	canonical	3	171	junction_9	21.9027029168029	119	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAATCATGTAATAAAAT	8183	False	NA	NA	False	NA	NA	NA	156848946	156835211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767
91041	chr5	+	4991	10	FSM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	34	3	20	-3	multi-exon	FALSE	canonical	3	652	junction_7	47.9165942028438	4	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTCTGTGTGCCCGTTT	NA	False	NA	NA	False	NA	NA	NA	93241329	93322814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93319197
91042	chr15	+	1117	7	NNC	ENSMUSG00000059883.17	novel	2831	12	NA	NA	10068	5167	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	8.1325819325039	54	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGAGCAGAGAGCTTT	NA	False	NA	NA	False	NA	NA	NA	94451620	94460001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94459797
91043	chr2	+	4819	13	NNC	ENSMUSG00000033943.16	novel	825	2	NA	NA	-24654	-3056	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	24.7603794173048	14	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTTTATACTTAGCTAA	7998	False	NA	NA	False	NA	NA	NA	119703054	119766176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119703365_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119751979_119752218_119752324_119753908_119754568_119756859_119757203_119762191_119762416_119762984_119763168_119763553_119763624_119765629
91044	chr14	-	2966	22	FSM	ENSMUSG00000040701.17	ENSMUST00000036041.15	2673	22	-17	-276	-17	1	multi-exon	TRUE	canonical	3	99	junction_4	12.8308372870802	11	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGTTTTGATGGCTGCT	NA	False	NA	NA	False	NA	NA	NA	55344067	55336030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
91045	chr13	-	4679	8	Fusion	ENSMUSG00000113450.2_ENSMUSG00000074865.12_ENSMUSG00000113841.2	novel	2439	5	NA	NA	45	-476	intron_retention	TRUE	non_canonical	0	0	junction_1	39.0306002400942	2	63	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCAAACCTGACCTTGT	NA	False	NA	NA	False	NA	NA	NA	62718968	62597606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62599173_62600616_62602024_62602273_62602596_62635397_62635409_62665470_62665913_62666080_62666545_62667985_62668359_62718874
91046	chr3	+	7067	16	NIC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-2	108	intron_retention	FALSE	canonical	3	780	junction_15	131.710524341156	133	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTCGGAAGACTTAATT	4847	False	NA	NA	False	NA	NA	NA	34074244	34124579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34122402_34123065
91047	chr4	+	4024	4	Intergenic	novelGene_2065	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	59	junction_2	25.74662868977	1	91	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGAAAAAAATCTTTTTA	NA	False	NA	NA	False	NA	NA	NA	146365084	146394377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146384326_146384431_146388486_146388614_146390758
91048	chr1	+	3442	2	FSM	ENSMUSG00000045216.8	ENSMUST00000088174.4	3719	2	269	8	269	-8	multi-exon	FALSE	canonical	3	381	junction_1	0	458	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCATTGTGTGCTGTG	2032	False	NA	NA	False	NA	NA	NA	36107749	36145519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_36108266_36142593
91049	chrM	+	841	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-160	0	-160	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-10	True	NA	NA	False	NA	NA	NA	7766	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
91050	chr6	-	3041	17	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGTGAGCTCTAATACA	NA	False	NA	NA	False	NA	NA	NA	37943105	37885246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37885298_37892097_37892230_37896305_37896424_37904458_37904574_37908286_37908433_37920343_37920465_37922454_37922723_37926154_37926331_37928381_37928561_37930428_37930562_37933334_37933409_37933936_37934108_37934443_37934771_37935494_37935629_37937714_37937791_37941637_37941786_37942433
91051	chr11	+	3931	20	NIC	ENSMUSG00000041164.16	novel	4116	20	NA	NA	-1	-6	combination_of_known_junctions	TRUE	canonical	3	65	junction_1	82.0795843784869	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTTGGCTGAGTCCTT	4622	False	NA	NA	False	NA	NA	NA	6339072	6356068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6339141_6345124_6345289_6345567_6345679_6345757_6345873_6346327_6346435_6346664_6346849_6347028_6347290_6347506_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6354989
91052	chr18	+	3823	24	Antisense	novelGene_ENSMUSG00000024376.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	251	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGAGCCGCGCTGCTGTCGC	NA	False	NA	NA	False	NA	NA	NA	33929384	34140227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_33930524_33931560_33931643_33931743_33931854_33934622_33934692_33935564_33935616_33943271_33943392_33957511_33957588_33958457_33958507_33961155_33961276_33961779_33961862_33965645_33965742_33987291_33987411_33992594_33992673_33994198_33994291_34007194_34007262_34007793_34007879_34009960_34010049_34011963_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139474_34139819
91053	chr11	+	3986	26	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	-45	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.823200808329	6	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTTTCTTATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	23205995	23246226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206243_23206319_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
91054	chr17	+	1175	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	132	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1751.13484632109	2	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3168	False	NA	NA	False	NA	NA	NA	35817046	35821669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821015_35821217
91055	chr1	-	4128	22	NNC	ENSMUSG00000026193.16	novel	7410	44	NA	NA	0	11358	intron_retention	FALSE	non_canonical	0	0	junction_13	374.575841752361	2	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CATAATAAATAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	71692331	71657257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677755_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
91056	chrX	+	3980	8	FSM	ENSMUSG00000041649.14	ENSMUST00000039545.5	4407	8	-26	453	-26	-453	multi-exon	FALSE	canonical	2	12	junction_1	60.7816433083649	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTTTCCAGTTACAAG	NA	False	NA	NA	False	NA	NA	NA	152142582	152178340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_152142706_152142837_152142961_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
91057	chr5	-	2358	8	ISM	ENSMUSG00000025537.13	ENSMUST00000026617.13	2374	10	4970	12	-8	-12	3prime_fragment	FALSE	canonical	3	15	junction_6	2.74791200881019	84	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGATTTAT	NA	False	NA	NA	False	NA	NA	NA	129902954	129892273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_129893531_129893815_129893942_129894757_129894912_129895036_129895128_129895702_129895867_129898301_129898368_129902056_129902112_129902509
91058	chr18	+	4686	21	Antisense	novelGene_ENSMUSG00000048799.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	171	29	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTTCCAAGAGCCCCGG	NA	False	NA	NA	False	NA	NA	NA	53814798	53877751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_53816534_53818951_53819101_53830666_53830764_53836189_53836319_53839893_53840054_53842128_53842219_53846450_53846546_53847837_53847988_53848070_53848167_53851516_53851701_53852286_53852434_53854690_53854872_53856153_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868856_53871548_53871660_53873117_53873284_53877355_53877420_53877559
91059	chr2	+	3442	24	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	14	-56	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	184.603329910348	88	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCCCCATCTGGACTCCA	NA	False	NA	NA	False	NA	NA	NA	166747992	166788253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783386_166784999_166785127_166786296_166786529_166787623
91061	chr16	+	3327	8	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	15	0	intron_retention	FALSE	canonical	3	1315	junction_3	298.416159216676	44	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6892	False	NA	NA	False	NA	NA	NA	22927346	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929474_22929875_22930014_22930252_22930343_22930566
91062	chr2	-	2181	8	NNC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	93	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	14.3114054701351	24	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAATGTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166349898	166341988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166343270_166344286_166344399_166345246_166345340_166347371_166347507_166347924_166348119_166348706_166348871_166349381_166349493_166349807
91063	chrX	-	2721	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-9	-10	intron_retention	FALSE	non_canonical	0	0	junction_9	429.385852119047	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921361	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915170_158916168_158916229_158921251
91064	chr11	-	3670	9	NIC	ENSMUSG00000018428.16	novel	3721	11	NA	NA	-52	0	intron_retention	FALSE	canonical	3	816	junction_2	54.5068802996466	73	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88735376	88721617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88732129_88735084
91065	chrM	-	774	1	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACCAACAATGTTAGGGC	9935	False	3673	59	True	NA	NA	NA	3650	2876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2900_3600
91067	chr19	+	6443	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-26	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1282.91928385573	13	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAATGTCTCGTGGTGTT	1443	False	NA	NA	False	NA	NA	NA	44282488	44295297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44290687_44290742_44292150_44292279
91068	chr19	-	1396	8	NNC	ENSMUSG00000024997.8	novel	1478	7	NA	NA	9	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	265.247977929933	30	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGCGTTTTTGACTTAT	1456	False	NA	NA	False	NA	NA	NA	60862985	60852507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_60852817_60852870_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
91069	chr1	-	950	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	-28	-31	-28	31	mono-exon	FALSE	NA	NA	NA	NA	NA	68	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837433	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837400
91070	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
91071	chr16	+	1454	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-655	1914	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_2	43.5	283	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCTGGCTCCGCGTGATT	2209	False	NA	NA	False	NA	NA	NA	93811644	93815009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93812370_93812713_93813006_93814572
91072	chr1	-	950	6	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	884.264304379635	4	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCACTGCTCAGGTCTTTT	1662	False	NA	NA	False	NA	NA	NA	4855920	4846600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4847025_4847747_4847872_4852790_4852867_4852910_4852957_4854173_4854329_4855795
91073	chr2	-	3689	6	NIC	ENSMUSG00000027201.17	novel	2928	15	NA	NA	7853	-3	intron_retention	FALSE	canonical	3	335	junction_3	141.821578047912	5	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATACAGCTTACTTGTTG	NA	False	NA	NA	False	NA	NA	NA	124950940	124929664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124942341_124950875
91074	chr12	-	790	6	FSM	ENSMUSG00000020949.10	ENSMUST00000220957.2	1910	6	1106	14	1106	-2	multi-exon	FALSE	canonical	3	9641	junction_1	352.767005259846	3	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGACTGACTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	65116801	65109211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724
91075	chr11	+	676	5	ISM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	-42	33516	-42	-33516	5prime_fragment	FALSE	canonical	3	267	junction_4	50.5692594369346	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTAGGATGGAGGGCCT	NA	False	NA	NA	False	NA	NA	NA	4587704	4599869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739
91076	chrX	-	6502	20	NIC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	-647	212	intron_retention	FALSE	canonical	3	303	junction_11	26.1108864911133	5	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTACCCTTACTGAAGT	NA	False	NA	NA	False	NA	NA	NA	73010610	72990588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72991121_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
91077	chr2	-	1249	8	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-1287	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	235.150841732168	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGTGACCTAGTTGTT	8336	False	NA	NA	False	NA	NA	NA	127648473	127643045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127648393
91078	chr11	-	3875	27	NNC	ENSMUSG00000025155.16	novel	1930	14	NA	NA	0	4927	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	431.502747733749	3559	5	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCGGCGCGTCCGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	120687224	120675099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120675162_120675939_120676037_120676522_120676701_120677120_120677291_120677375_120677519_120677600_120677674_120677832_120677890_120678199_120678290_120678520_120678615_120678698_120678806_120678885_120678969_120679069_120679206_120679285_120679421_120679490_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686968
91079	chr16	-	564	1	Intergenic	novelGene_3738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
91080	chr4	+	5057	1	Intergenic	novelGene_1886	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820778	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66820800_66825800
91081	chr5	+	2535	5	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	251	269	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	84.3782406785067	617	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATACCGCACTGGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	110071516	110092071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110071633_110080792_110080893_110088291_110088419_110088605_110088667_110089940
91082	chr16	-	2123	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1204	-3	695	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	743	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
91084	chr6	+	9805	3	Intergenic	novelGene_4120	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	204	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGACATTCGCAGCAA	NA	False	NA	NA	False	NA	NA	NA	10689797	10716756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_10690729_10690779_10694459_10711561
91085	chr4	+	1344	11	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	5383.18773218992	4	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCAGGTCCTTCAGGA	NA	False	NA	NA	False	NA	NA	NA	150321696	150332975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332416_150332936
91086	chr8	-	1227	5	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	3	-371	at_least_one_novel_splicesite	TRUE	canonical	3	335	junction_3	3196.38170436511	36	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCTGCCCTTATTAACT	NA	False	NA	NA	False	NA	NA	NA	46664064	46660204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661576_46662058_46662244_46662313_46662546_46663848
91087	chr8	+	1997	5	ISM	ENSMUSG00000031447.8	ENSMUST00000033824.8	2229	9	8724	9	-5296	-9	intron_retention	FALSE	canonical	3	2592	junction_3	149.225291087	1	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTGTCTGGACGTGTCC	NA	False	NA	NA	False	NA	NA	NA	13217884	13225329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_13217966_13221204_13221384_13222540_13222661_13223626_13223694_13223779
91088	chr11	-	3771	2	Intergenic	novelGene_2546	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	175	junction_1	0	206	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCTTGTCTTGCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	121799133	121795184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121798837_121799014
91089	chr12	-	8598	3	Antisense	novelGene_ENSMUSG00000112262.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	84	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGCTTCTGCCCGT	NA	False	NA	NA	False	NA	NA	NA	95313346	95215301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_95217670_95217727_95219965_95309353
91090	chr6	+	1275	3	Intergenic	novelGene_4151	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	15	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGTTTTCTTTATTTACA	NA	False	NA	NA	False	NA	NA	NA	44219128	44268200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_44219524_44230234_44230346_44267431
91091	chr17	+	3039	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-11	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	716.21547735301	16	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460769	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35469389_35470193_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
91092	chr11	+	2283	1	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	50688	0	18139	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGTCTCCCATCT	NA	False	NA	NA	False	NA	NA	NA	57950577	57952860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57950600_57952900
91093	chr7	+	552	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	98	459	-13	0	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050174	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
91094	chr7	-	467	6	NIC	ENSMUSG00000074129.15	novel	562	7	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	6457.37629691812	113	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCCTGCCTGGCCTGCC	NA	False	NA	NA	False	NA	NA	NA	44778160	44775348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776632_44776699_44776919_44776993_44778123
91095	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	473	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
91096	chr2	-	3462	5	FSM	ENSMUSG00000075040.10	ENSMUST00000099714.10	3469	5	7	0	7	0	multi-exon	FALSE	canonical	3	3	junction_4	8.1967981553775	9	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGTGTGGCCACTTGCAT	NA	False	NA	NA	False	NA	NA	NA	91480117	91474013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91476819_91477940_91478192_91478360_91478423_91479495_91479771_91480048
91097	chr2	-	6168	18	Fusion	ENSMUSG00000014867.10_ENSMUSG00000015790.17	novel	1173	9	NA	NA	-42	0	intron_retention	FALSE	non_canonical	0	0	junction_9	315.880556463289	53	28	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	NA	False	NA	NA	NA	26823437	26803394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804224_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268_26806510_26806710_26806876_26807443_26809369_26809736_26811263_26811381_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
91098	chr3	+	2123	15	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	9	-5835	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	319.807978101146	1	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGGAACTGTGTGTAAC	NA	False	NA	NA	False	NA	NA	NA	63883535	63924165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893091_63897581_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
91099	chr2	-	7262	20	NNC	ENSMUSG00000086418.2	novel	839	2	NA	NA	-97274	189745	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	393	92	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCAGGACTGGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	20815319	20524440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_20524739_20534769_20535051_20666705_20666907_20714214_20714413_20718163_20718259_20748268_20749101_20765023_20765074_20771253_20771421_20782834_20783011_20785750_20785882_20786606_20786755_20789852_20790310_20793236_20793420_20802684_20802845_20803428_20803593_20806350_20806470_20810392_20810472_20810583_20812183_20812710_20812833_20813517
91100	chr6	+	8160	5	Antisense	novelGene_ENSMUSG00000107459.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	64	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCCATGGAAGGAGTTAC	557	False	NA	NA	False	NA	NA	NA	10147556	10267877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_10148015_10148056_10149878_10228412_10229321_10262784_10264124_10264243
91101	chr17	+	1477	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	274	98	274	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	42	True	NA	NA	NA	40157517	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157500_40159000
91102	chr5	+	3457	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	14	8	11	-8	multi-exon	FALSE	canonical	3	48	junction_6	9.89356624586021	435	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGGGTATGGTGGTGCA	8091	False	NA	NA	False	NA	NA	NA	138170277	138178683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
91103	chr6	+	6113	14	NIC	ENSMUSG00000030096.9	novel	6186	15	NA	NA	8	-5	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	99.8156288529688	36	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAACGTCTGGTGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	91661057	91736042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_91661290_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
91104	chr2	-	4402	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	2	2800	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	302.910694576618	18	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177482109	177470783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177474918_177476043_177476105_177476312_177476440_177482029
91105	chr8	-	2683	16	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	25	24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1391.42523893868	1	115	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTGTGTAGCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	26337697	26306528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308675_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318886_26321300_26321377_26322667_26322760_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
91106	chr19	+	8412	12	NNC	ENSMUSG00000055491.15	novel	564	5	NA	NA	70	3	intron_retention	FALSE	canonical	2	12	junction_1	139.312894753602	11	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTAAGTGGTATTTGGTT	NA	False	NA	NA	False	NA	NA	NA	46045767	46061243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46047001_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
91107	chr6	-	1315	1	Intergenic	novelGene_4114	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	442	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTTCTGTCGTGAGTT	NA	False	NA	NA	False	NA	NA	NA	3405055	3403740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_3403700_3405100
91108	chr19	+	3351	17	NIC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	38	-9	intron_retention	FALSE	canonical	3	728	junction_3	73.4630008916053	709	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCTCCAGGCTCAGCTA	3507	False	NA	NA	False	NA	NA	NA	8919276	8929658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
91109	chr2	+	458	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11303	-62	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGTATGACAATGAATGCA	NA	False	NA	NA	False	NA	NA	NA	11413731	11425969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11413994_11425773
91110	chr11	+	3927	13	Intergenic	novelGene_2367	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCGTTTTTTCTCTAGTT	793	False	NA	NA	False	NA	NA	NA	58010826	58032600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_58012613_58013109_58013205_58015757_58016244_58017256_58017421_58019470_58019725_58020842_58021057_58021469_58021591_58025591_58025738_58027683_58027824_58028495_58028593_58029844_58029968_58030320_58030441_58032419
91111	chr14	+	7244	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	25	junction_7	47.1299732123836	513	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTAGCCTCTCGTGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	21531501	21722197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21675284_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
91112	chr13	+	6107	21	NNC	ENSMUSG00000005397.9	novel	6091	20	NA	NA	51	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	279.271391302439	866	58	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTGATGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	13612186	13686849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13673346_13673419_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
91113	chr5	-	4485	20	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	535	-3	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_19	181.770090089017	6	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGGAGCTTGGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	31336658	31313351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331840_31336590
91114	chr19	+	5028	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	419	8	17	-8	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	178	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1486	False	NA	NA	False	NA	NA	NA	44282531	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
91115	chrX	+	4609	6	NIC	ENSMUSG00000041649.14	novel	4407	8	NA	NA	261	0	intron_retention	FALSE	canonical	3	100	junction_1	23.8964432499902	269	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTTTTGAGATTTTCA	NA	False	NA	NA	False	NA	NA	NA	152142869	152178793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
91116	chr11	+	1204	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-73	-67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1053.90480278502	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCCTTCAAATGCTGT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279532_52280080
91117	chr7	-	830	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	991	0	-5	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
91118	chr2	-	1450	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	67	1025	-37	-1017	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	277	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3699	False	NA	NA	False	NA	NA	NA	154734788	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
91119	chr16	+	4070	17	Antisense	novelGene_ENSMUSG00000022673.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2107	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCCACCCAGGAGAACGTT	NA	False	NA	NA	False	NA	NA	NA	15440256	15455163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_15440371_15441292_15442633_15443424_15443559_15443898_15444128_15445511_15445718_15446453_15446584_15447164_15447531_15448123_15448384_15449561_15449684_15449980_15450202_15452302_15452444_15452914_15453011_15453095_15453190_15453856_15453960_15454050_15454214_15454484_15454647_15454974
91120	chr6	-	2750	12	NNC	ENSMUSG00000004980.17	novel	1662	12	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2093.46237780208	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	NA	False	NA	NA	NA	51446777	51438103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438962_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
91121	chr10	-	433	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	247	1	24	-1	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	8	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGGCATCGGAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	128462369	128460406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
91123	chr14	+	6280	8	FSM	ENSMUSG00000036291.7	ENSMUST00000037473.6	6321	8	41	0	5	0	multi-exon	FALSE	canonical	3	109	junction_2	12.7487494384703	259	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAAATTTGTGACATAA	NA	False	NA	NA	False	NA	NA	NA	49303992	49328336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
91124	chr15	+	4452	23	NNC	ENSMUSG00000022369.14	novel	3197	17	NA	NA	-23314	186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.3562424963562	18	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCCTCGGAATGCCAT	NA	False	NA	NA	False	NA	NA	NA	55397489	55474395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55397734_55402425_55402547_55403517_55403606_55406719_55406781_55411537_55411636_55418719_55418840_55420653_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55472902
91126	chr17	+	2907	15	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	632.639804666905	12	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	493	False	NA	NA	False	NA	NA	NA	56610393	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612117_56619121_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
91127	chr6	+	2600	2	ISM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	14792	-2172	9924	2172	3prime_fragment	FALSE	canonical	3	6747	junction_1	0	4	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATTAGCAGGTGGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	67258786	67263467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_67258806_67260886
91128	chr13	-	11977	4	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	174	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	23514186	23354443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23355065_23355134_23361359_23508976_23510673_23510750
91129	chr11	-	1958	14	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	84	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	695.143423113695	18	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	5285	False	NA	NA	False	NA	NA	NA	88846207	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815085_88815136_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
91130	chr19	-	2378	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22702427	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765
91131	chr11	-	1062	4	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3699	640	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	12.9614813968157	217	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCATCTATGCAGCCACA	NA	False	NA	NA	False	NA	NA	NA	83473161	83465503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83473098
91132	chr7	-	2110	6	Intergenic	novelGene_2900	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	39	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCAAGACCGTTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	26710369	26581770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_26582355_26582997_26583139_26583374_26583608_26583797_26583843_26706380_26706470_26709351
91133	chr7	-	2261	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	9	15	9	-6	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	42	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAACACAAACTGAGATTG	NA	False	NA	NA	False	NA	NA	NA	143102820	143067330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
91134	chr5	-	1397	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.835320399634	50	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9629	False	NA	NA	False	NA	NA	NA	137599309	137594906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
91135	chr13	+	3482	2	Intergenic	novelGene_1554	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	40	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113855139	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113855885_113857641
91136	chr2	+	3292	26	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	-3	-127	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	178.988714728052	4	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTGTCTTCAGGACAG	NA	False	NA	NA	False	NA	NA	NA	166747975	166788182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623_166787781_166788005
91137	chr5	+	978	6	NNC	ENSMUSG00000029223.13	novel	980	7	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	234.909855050826	1	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGCTGGTTTTTATTTTC	NA	False	NA	NA	False	NA	NA	NA	66833594	66844573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_66833707_66834316_66834416_66837005_66837157_66839784_66839871_66839951_66840093_66844184
91138	chr2	+	8398	29	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	-770	-3	combination_of_known_junctions	FALSE	canonical	3	283	junction_28	60.4172144005197	115	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGTGTCGGTTTTCT	9130	False	NA	NA	False	NA	NA	NA	32072467	32124546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32072639_32073134_32073313_32075356_32075460_32077492_32077566_32081520_32081665_32083774_32084017_32084391_32084514_32084868_32085009_32089012_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32120622
91139	chr4	+	4596	18	NIC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_3	176.797344544714	17	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390698	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
91140	chr14	-	2412	16	NIC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-14	-10	combination_of_known_junctions	FALSE	canonical	3	95	junction_15	172.951425422156	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGCTTTACCCTGCTT	4845	False	NA	NA	False	NA	NA	NA	54754832	54744653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54754703
91141	chrM	-	1249	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1175	-5	1175	mono-exon	FALSE	NA	NA	NA	NA	NA	27	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTCCTGCTTCTACTATT	9245	False	NA	NA	False	NA	NA	NA	6943	5694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5700_6900
91142	chr9	-	4698	21	NNC	ENSMUSG00000050471.18	novel	1962	10	NA	NA	1	5852	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.5272675278456	6	20	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCGCGAGATGACGTAGAC	6415	False	NA	NA	False	NA	NA	NA	35179050	35122408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35122699_35123284_35123370_35123641_35123807_35124014_35124175_35124423_35124580_35124675_35124829_35125038_35125128_35125228_35125351_35125481_35125570_35125855_35126027_35126111_35126327_35126761_35126924_35127003_35127108_35127231_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35155909_35156003_35178332_35178406_35179018
91143	chr6	-	3843	14	NIC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-30	3	combination_of_known_splicesites	FALSE	canonical	2	5	junction_9	147.495782709743	44	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTCTGTAGTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	49191668	49062153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
91144	chr2	-	3203	4	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	3043	1737	combination_of_known_junctions	FALSE	canonical	3	688	junction_1	232.759293882949	76	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	5391	False	NA	NA	False	NA	NA	NA	177266949	177259259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761
91145	chr11	+	374	3	ISM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	1053	0	-113	0	3prime_fragment	FALSE	canonical	3	8302	junction_2	2434	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	3442	False	NA	NA	False	NA	NA	NA	101334324	101336355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_101334497_101336045_101336157_101336264
91146	chr2	+	1231	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11403	209	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCAACCCCCCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	11413631	11426240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623_11426117_11426174
91147	chr7	-	1097	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5582.89117652215	43	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	8423	False	NA	NA	False	NA	NA	NA	99132857	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128705_99128843_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
91148	chr4	+	2934	15	ISM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	5445	1263	5445	0	3prime_fragment	FALSE	canonical	3	463	junction_7	96.1621982243903	14	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	5359	False	NA	NA	False	NA	NA	NA	40976350	41012608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
91150	chr14	+	3181	6	NNC	ENSMUSG00000021771.15	novel	663	3	NA	NA	2032	175	intron_retention	FALSE	non_canonical	0	0	junction_1	955.985648427841	4	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTAATGGCTCACGTATG	NA	False	NA	NA	False	NA	NA	NA	21885717	21895762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21886520_21886718_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
91151	chr11	-	3400	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_13	247.717939428683	82	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	95201060	95165084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95200860
91152	chr17	+	2940	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-58964	162	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	107.988425305678	1	161	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGAGTATGCTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	17225410	17310052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17225539_17274215_17274293_17305782_17305910_17306151_17306213_17307505
91153	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
91154	chr17	-	2110	8	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	0	-1481	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	222.034011000154	82	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGTGTATATGTGTGTTG	NA	False	NA	NA	False	NA	NA	NA	56597511	56585956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593271_56593476_56593647_56594793_56594877_56597453
91155	chr13	+	3180	3	FSM	ENSMUSG00000021360.17	ENSMUST00000110191.10	4352	3	1177	-5	1177	0	multi-exon	FALSE	canonical	3	38	junction_1	71.5	3	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAGTGGATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	41014406	41114368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41014750_41107051_41107148_41111627
91156	chr9	-	1353	1	Antisense	novelGene_ENSMUSG00000032216.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTTCCCACTGACTGTAA	6198	False	NA	NA	False	NA	NA	NA	72657117	72655764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72655800_72657100
91157	chr2	+	2364	4	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-4	120677	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	80.6032808816669	80	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGAGATTTACACAGTTG	NA	False	NA	NA	False	NA	NA	NA	104389519	104522451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389830_104390068_104390321_104390422_104391328_104521554
91158	chr14	-	2695	18	NNC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	22	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	125.468119994475	39	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTCTTCGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47655612	47625237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645415_47648891_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
91159	chr7	-	1168	9	ISM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	2979	2	-38	-2	3prime_fragment	FALSE	canonical	3	3311	junction_5	128.438458025624	2	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCACTTCTCGCCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	44633013	44626183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909
91160	chr4	+	2516	8	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-7	-3	multi-exon	TRUE	non_canonical	0	0	junction_1	31.3342741210623	6	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576866	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147641551_147641685_147661528_147661587_147665698_147665826_147666658_147666774_147667290_147667855_147668191_147668674_147668757
91161	chr11	-	2594	11	NIC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	-63	-7	combination_of_known_splicesites	FALSE	canonical	1	7	junction_9	355.35677846356	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTACACTCCTCATATT	NA	False	NA	NA	False	NA	NA	NA	60701980	60678936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60697771_60697869_60701729
91162	chr14	+	7126	3	Antisense	novelGene_ENSMUSG00002076707.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	406	135	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTGCCGAAACCCGGGA	NA	False	NA	NA	False	NA	NA	NA	66700137	66851391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_66706078_66706206_66707134_66851132
91163	chr13	-	3116	10	Fusion	ENSMUSG00000091347.3_ENSMUSG00000113559.2	novel	1588	5	NA	NA	-16567	172907	multi-exon	TRUE	non_canonical	0	0	junction_1	40.6542178881696	1	77	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACCTCATGAACATAAT	9920	False	NA	NA	False	NA	NA	NA	66391954	65951249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_65951983_65952150_65952319_65952570_65952817_65952900_65953107_66124555_66125042_66374965_66375749_66375832_66375998_66384209_66384271_66384471_66384599_66391813
91164	chr6	-	2055	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-18	-54	combination_of_known_junctions	FALSE	canonical	3	36	junction_7	625.701826359972	57	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATTAGATTTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	124942389	124935429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942336
91165	chr2	+	4536	21	NIC	ENSMUSG00000027624.21	novel	6251	22	NA	NA	25	-1483	combination_of_known_junctions	FALSE	canonical	3	98	junction_12	20.7663188841932	30	46	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGTGAAAGTATCCCAC	7666	False	NA	NA	False	NA	NA	NA	156262853	156383649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
91167	chrX	-	1738	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1329.68574764867	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642027	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634269_135634325_135635251_135636294_135636372_135640553_135640644_135641958
91168	chr11	+	2782	13	NNC	ENSMUSG00000041164.16	novel	3806	19	NA	NA	885	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	95.0965518127059	6	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGGCTTGGCTGAGTCC	1068	False	NA	NA	False	NA	NA	NA	6347613	6356066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6347687_6348261_6348340_6348555_6348725_6349503_6349649_6349722_6349934_6350769_6350876_6351097_6351256_6352406_6352475_6352803_6352873_6353119_6353365_6353785_6353956_6354039_6354283_6355019
91169	chr2	-	3605	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5327	4610	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.441502922054	617	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCTCTCATATCTGTGT	NA	False	NA	NA	False	NA	NA	NA	176964156	176951836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176952470_176954600_176957402_176958542_176958604_176964046
91170	chr17	+	1582	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-588	855	-588	-855	mono-exon	FALSE	NA	NA	NA	NA	NA	179	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGCGAAAGCATTTGCC	NA	False	NA	NA	False	NA	NA	NA	40156655	40158237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40156700_40158200
91171	chr6	-	4980	16	Intergenic	novelGene_4208	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	135	82	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCTCTCCGCATCACCC	NA	False	NA	NA	False	NA	NA	NA	91736044	91661095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_91661288_91675967_91676014_91700262_91700501_91701820_91701955_91702990_91703228_91712071_91712203_91716855_91716990_91717926_91718032_91718156_91718280_91721893_91722008_91725310_91725450_91726705_91726810_91727252_91727355_91729265_91729437_91731892_91732963_91734104
91172	chr1	-	3492	7	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	86	-1520	intron_retention	FALSE	canonical	3	8	junction_6	1119.26265411158	41	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTTTCTCATCTTT	NA	False	NA	NA	False	NA	NA	NA	13730684	13695073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13722991_13723145_13730552
91173	chr12	+	5571	13	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-826	-1	intron_retention	FALSE	canonical	0	0	junction_10	305.114857699341	25	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGTGTGAAGTACA	1626	False	NA	NA	False	NA	NA	NA	109602447	109628142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109604361_109608998_109609087_109609847_109609896_109611695_109611766_109612280_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109624486_109624556_109626156_109626242_109627179
91174	chr16	-	5273	33	NNC	ENSMUSG00000022710.18	novel	4745	32	NA	NA	8925	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	337.52316905427	34	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATAATCCGATGACTGC	NA	False	NA	NA	False	NA	NA	NA	8601247	8507471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510877_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516671_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523474_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8533608_8533784_8534378_8534484_8574679_8574937_8601193
91175	chr5	+	4129	4	Antisense	novelGene_ENSMUSG00000044968.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	296	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCTTGGTTCCCAACAGA	NA	False	NA	17	True	NA	NA	NA	21867703	21888863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_21870361_21875486_21875599_21880449_21881102_21888155
91176	chr4	+	3408	21	Antisense	novelGene_ENSMUSG00000093562.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	28	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCTGTCAATTAAAATAAAA	3116	False	NA	NA	False	NA	NA	NA	41194318	41221619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41195247_41195333_41195528_41195609_41195672_41195744_41195852_41195941_41196042_41196325_41196532_41196727_41196808_41199216_41199266_41199493_41199585_41199714_41199903_41201463_41201534_41202273_41202460_41203533_41203573_41205523_41205596_41206152_41206330_41206837_41207105_41209353_41209570_41211704_41211897_41216565_41216636_41218313_41218362_41221553
91177	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
91178	chr1	+	4187	14	FSM	ENSMUSG00000026483.14	ENSMUST00000148810.8	6531	14	-251	2595	-64	2	multi-exon	FALSE	canonical	3	182	junction_12	16.2156327524439	269	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGACTTTACCAATGTAGAAA	NA	False	NA	NA	False	NA	NA	NA	151446872	151595095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
91179	chr11	+	1247	8	NIC	ENSMUSG00000020708.13	novel	1316	11	NA	NA	12	-427	intron_retention	FALSE	canonical	3	2261	junction_5	213.316666015574	4	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGAGGCTTCAGGGGAG	4548	False	NA	NA	False	NA	NA	NA	106146991	106153519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406
91180	chr8	-	5081	2	Intergenic	novelGene_1668	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGATCTTTCAAAAACATGA	NA	False	NA	NA	False	NA	NA	NA	73699415	73608076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_73608326_73694583
91181	chr12	-	5437	2	Antisense	novelGene_ENSMUSG00000079012.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	84	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTAATGGTGAATGC	NA	False	NA	NA	False	NA	NA	NA	104349228	104343727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_104344972_104345035
91182	chr13	-	1116	11	NNC	ENSMUSG00000069089.9	novel	1159	11	NA	NA	36	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	304.060997169976	7	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAAGGATAACTGCAGTC	NA	False	NA	NA	False	NA	NA	NA	100867372	100839798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867049_100867330
91183	chr16	+	3024	9	ISM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	189	0	0	intron_retention	FALSE	canonical	3	563	junction_3	488.360122629807	33	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
91184	chr7	-	1912	3	NIC	ENSMUSG00000003429.12	novel	449	4	NA	NA	-308	7	intron_retention	FALSE	canonical	3	18027	junction_2	5735	56	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACAGGCTTGGAGTCTC	NA	False	NA	NA	False	NA	NA	NA	44774171	44771809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44771983_44772252_44772663_44772842
91185	chr6	-	583	1	FSM	ENSMUSG00000030126.18	ENSMUST00000204574.2	2697	1	-184	2298	-184	-2298	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGATGGCTGCGCTGTAC	NA	False	NA	NA	False	NA	NA	NA	116151458	116150875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_116150900_116151500
91186	chr1	-	2054	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	7	-1533	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	139	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAACAAAAAAAAAAACT	NA	False	NA	NA	False	NA	NA	NA	13730763	13695086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695259_13696158_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
91187	chrM	-	1428	2	Antisense	novelGene_ENSMUSG00000064342.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTAATAAATTAAATAGATA	9986	False	NA	-1	True	NA	NA	NA	3710	2208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2295_2368
91188	chr4	+	7326	3	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	4607	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	28	175	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAAAGTGCCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	147394998	147422798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147415724
91190	chr19	-	5905	21	NIC	ENSMUSG00000024991.9	novel	5125	22	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_16	309.803421543404	31	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGTGTTTTGTCAAT	8739	False	NA	NA	False	NA	NA	NA	60779096	60749556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_60750743_60751502_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
91191	chr13	+	4159	3	FSM	ENSMUSG00000021360.17	ENSMUST00000110191.10	4352	3	198	-5	198	0	multi-exon	FALSE	canonical	3	38	junction_1	71.5	153	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAGTGGATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	41013427	41114368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41014750_41107051_41107148_41111627
91192	chr16	-	564	1	Intergenic	novelGene_3739	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
91193	chr9	+	636	4	Antisense	novelGene_ENSMUSG00000060461.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTTCAGGAAGTTTTAGT	4267	False	NA	NA	False	NA	NA	NA	78180208	78275448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78180293_78274391_78274569_78274992_78275185_78275265
91194	chrM	-	1385	2	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACAGCTGCTTCGCAGGC	-66	True	NA	NA	False	NA	NA	NA	11544	10097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10514_10575
91195	chr7	+	1047	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-17	202	-17	-202	mono-exon	FALSE	NA	NA	NA	NA	NA	49	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACATGGCCTCCAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	51396377	51397424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397400
91196	chr13	+	801	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	63	-31	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1280	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCAAAAAAAACAAAAAAACA	8025	False	NA	NA	False	NA	NA	NA	74554590	74555434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554975_74555017
91197	chr3	+	2020	2	Intergenic	novelGene_3103	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	18	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGACAGGACTTGCGGAT	8265	False	NA	NA	False	NA	NA	NA	37722973	37733074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_37723216_37731296
91198	chr5	+	4456	3	Intergenic	novelGene_897	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGCACTTATAATAAAACAA	3191	False	NA	NA	False	NA	NA	NA	145267111	145273962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_145267994_145268038_145268159_145270508
91199	chr9	-	6340	23	FSM	ENSMUSG00000032580.13	ENSMUST00000183307.8	6321	23	-21	2	-6	-1	multi-exon	FALSE	canonical	3	324	junction_22	95.559855328549	42	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCCTGTGTCTTTATTG	9699	False	NA	NA	False	NA	NA	NA	107648201	107617695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
91200	chr14	+	1959	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.023770523273	5	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271222_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
91201	chr2	-	3455	5	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-5	2795	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	266.044521650043	52	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTGCTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	177482116	177470788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177473025_177473945_177474890_177476043_177476105_177476312_177476440_177482029
91202	chr15	+	1500	13	Antisense	novelGene_ENSMUSG00000022336.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGCTTGTTCGCTAAAAC	NA	False	NA	NA	False	NA	NA	NA	43113447	43146103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_43113633_43114874_43115010_43115599_43115704_43124455_43124564_43125992_43126096_43126603_43126729_43128893_43129022_43129529_43129654_43134272_43134380_43135671_43135714_43138631_43138751_43141703_43141819_43145998
91203	chr4	-	3378	4	FSM	ENSMUSG00000038668.15	ENSMUST00000055018.11	3512	4	127	7	-46	-7	multi-exon	FALSE	canonical	3	120	junction_3	72.8941393772885	16	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGATGTGTGGTTC	-6	True	NA	NA	False	NA	NA	NA	58553230	58435261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553133
91205	chr13	-	1786	6	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	80	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2693.26794805121	22	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	NA	False	NA	NA	False	NA	NA	NA	58542430	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291
91206	chr7	+	2942	19	NNC	ENSMUSG00000030978.11	novel	3997	19	NA	NA	-63	238	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	226.94906156054	134	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGATTGTGTGGTACTAA	NA	False	NA	NA	False	NA	NA	NA	102091026	102118127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106437_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
91207	chr8	-	2028	8	NIC	ENSMUSG00000003813.16	novel	2074	9	NA	NA	-3	-29	intron_retention	FALSE	canonical	3	805	junction_3	202.146945945523	15	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAGCCCTAATAATGGT	NA	False	NA	NA	False	NA	NA	NA	85567273	85561568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85562304_85562383_85562549_85564088_85564220_85564317_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
91208	chr1	+	3462	4	FSM	ENSMUSG00000018196.19	ENSMUST00000111957.10	580	4	-4	-2878	1	-22	multi-exon	FALSE	canonical	3	64	junction_1	245.711664806989	74	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCTTCCAATGATTGC	NA	False	NA	NA	False	NA	NA	NA	143615348	143625392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_143615423_143617385_143617450_143620784_143620962_143622245
91210	chr4	+	5336	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	74	4750	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	39.2371705854991	2	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCAGTTCAGAATCATCC	NA	False	NA	NA	False	NA	NA	NA	145136909	145181076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145159036_145159152_145176036
91211	chr17	+	5203	23	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-17106	40846	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2733.21046089644	2466	58	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGACTGCGCGGTCACGTGC	6985	False	NA	NA	False	NA	NA	NA	6680404	6744541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680586_6691899_6692102_6697573_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6706242_6709601_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716178_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6744415
91212	chr10	+	4994	12	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	44	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCTAAAAGAGGGCTACTG	NA	False	NA	NA	False	NA	NA	NA	62648138	62714493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62713928
91213	chr5	-	384	1	Intergenic	novelGene_946	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCATGTCTCATTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	146198175	146197791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_146197800_146198200
91214	chr12	+	2102	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	42	49	42	-49	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	12956	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
91215	chr4	-	3757	3	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAAAGAGAATGATGAAAT	NA	False	NA	NA	False	NA	NA	NA	145179479	145136860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145137085_145159061_145159149_145176033
91216	chr15	+	2058	19	ISM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	56759	-4	2914	4	3prime_fragment	FALSE	canonical	3	549	junction_2	89.3771485971556	5	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCTACAGAGTATTCGA	NA	False	NA	NA	False	NA	NA	NA	12881707	12935381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
91217	chr2	-	7384	21	NNC	ENSMUSG00000086418.2	novel	839	2	NA	NA	-97290	189748	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	373	76	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGACTGGGGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	20815335	20524437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_20524739_20534769_20535051_20666705_20666907_20714214_20714413_20718163_20718259_20748268_20749100_20764354_20764459_20765021_20765074_20771253_20771421_20782834_20783008_20785750_20785888_20786611_20786755_20789852_20790310_20793236_20793420_20802684_20802845_20803428_20803593_20806350_20806470_20810392_20810472_20810583_20812183_20812710_20812833_20813517
91218	chr1	-	842	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	-3	-161	3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
91219	chr2	-	1251	11	FSM	ENSMUSG00000027170.13	ENSMUST00000028592.12	1283	11	32	0	-5	0	multi-exon	FALSE	canonical	3	1722	junction_10	235.400531010446	3	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2672	False	NA	NA	False	NA	NA	NA	104847393	104830000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
91220	chr4	+	7454	5	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	-56	3	intron_retention	TRUE	non_canonical	0	0	junction_1	6.49519052838329	123	122	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146036303_146036397_146054375_146054480_146056093_146057935_146057983
91221	chr13	+	4727	3	Intergenic	novelGene_1484	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	80849204	80854192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_80849214_80849327_80850455_80850601
91222	chr12	-	503	6	ISM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	76	805	1	-573	5prime_fragment	FALSE	canonical	3	10789	junction_3	2653.3760381823	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGACAAAGCACAGCAGAAC	NA	False	NA	NA	False	NA	NA	NA	28685876	28681657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
91223	chr11	-	1190	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	134	309	0	-85	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATAGGACATAGTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	33113072	33102595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
91224	chr15	+	1465	14	NIC	ENSMUSG00000056851.15	novel	1576	14	NA	NA	-14	3	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	147.555385248985	8	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTTTTTCTTTGTGA	2213	False	NA	NA	False	NA	NA	NA	102379177	102407319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
91226	chr11	+	5601	8	NNC	ENSMUSG00000040599.14	novel	3003	3	NA	NA	-9679	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	43.0907916674852	320	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTCAGTATTTATGTATT	NA	False	NA	NA	False	NA	NA	NA	70900757	70918187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70901252_70903934_70904024_70904265_70904469_70905377_70905466_70906547_70906627_70909137_70911372_70915375_70915538_70915935
91227	chr1	+	2694	15	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	418	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTGCGTGGGGTTGAGA	NA	False	NA	NA	False	NA	NA	NA	20873229	20887671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873878_20875039_20875132_20875486_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882396_20882786_20882918_20883182_20883339_20884621_20884731_20884911_20885151_20886871_20887003_20887465
91228	chr4	+	1971	8	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	6	40402	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	151.186464138743	125	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTATATTTAATTCAAAT	NA	False	NA	NA	False	NA	NA	NA	146206906	146255406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158_146253885_146254712
91229	chr2	-	1074	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11203	192	multi-exon	FALSE	non_canonical	0	0	junction_1	0	328	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	11426044	11413649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414319_11425639
91230	chr4	-	1552	3	NIC	ENSMUSG00000047675.16	novel	860	6	NA	NA	0	-8	intron_retention	FALSE	canonical	3	8358	junction_2	2343.5	65	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTGTATGCTGTCTAGGT	NA	False	NA	NA	False	NA	NA	NA	117013281	117011038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_117011185_117011495_117012875_117013254
91231	chr8	+	4525	4	NIC	ENSMUSG00000066880.16	novel	769	4	NA	NA	-5	1551	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	4.49691252107735	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTAAAGAAAGATGCCCAT	NA	False	NA	NA	False	NA	NA	NA	72662473	72690024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_72662583_72666965_72667093_72682045_72682173_72685862
91232	chr4	+	2831	4	Antisense	novelGene_ENSMUSG00000083834.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACCCACCCACTCCGGG	NA	False	NA	NA	False	NA	NA	NA	58435869	58553256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_58437632_58486473_58487223_58504617_58504781_58553099
91233	chr11	+	3868	12	Antisense	novelGene_ENSMUSG00000020530.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCCACACGCGCTCAGCC	NA	False	NA	NA	False	NA	NA	NA	84723416	84761024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_84725410_84727190_84727342_84727425_84727549_84728664_84728814_84730805_84731002_84731086_84731261_84732239_84732453_84744881_84744996_84749266_84749368_84751373_84751625_84753063_84753145_84760702
91234	chrX	-	2814	2	Intergenic	novelGene_4011	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGAAAGCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	116231727	116226546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116228998_116231364
91235	chr6	-	720	3	ISM	ENSMUSG00000029922.16	ENSMUST00000122996.8	1485	5	50	4794	50	-9	5prime_fragment	FALSE	canonical	3	157	junction_2	2093.5	285	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGAAGTGTCTCCGAA	NA	False	NA	NA	False	NA	NA	NA	39396951	39382481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_39382895_39387021_39387151_39396773
91236	chr1	-	5287	8	NNC	ENSMUSG00000026088.16	novel	1231	7	NA	NA	61	2608	intron_retention	FALSE	non_canonical	0	0	junction_1	91.7013787090623	344	60	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTCAAGAGGCCACGCCC	NA	False	NA	NA	False	NA	NA	NA	37929427	37911273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_37911405_37913942_37918445_37918640_37918702_37920013_37920130_37920815_37920867_37921642_37921780_37924295_37924398_37929240
91237	chr11	-	931	1	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCAGCCTCTGCTGGTCA	NA	False	NA	NA	False	NA	NA	NA	62444035	62443104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62443100_62444000
91238	chr17	-	4187	13	FSM	ENSMUSG00000024045.7	ENSMUST00000237103.2	4071	13	-116	0	-3	0	multi-exon	FALSE	canonical	3	426	junction_6	76.8282265114124	966	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTGTGTTCATTAATT	NA	False	NA	NA	False	NA	NA	NA	32540215	32522647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
91239	chr4	+	5255	22	NNC	ENSMUSG00000028580.16	novel	4017	22	NA	NA	-13	-3	at_least_one_novel_splicesite	FALSE	canonical	3	176	junction_2	126.002609482391	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTTGTACTGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	130390656	130508870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396515_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
91240	chr17	+	6476	17	NNC	ENSMUSG00000061607.16	novel	649	4	NA	NA	44	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	53.9064221011745	23	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTACTTTATATTTTCCTG	9434	False	NA	NA	False	NA	NA	NA	36152611	36170552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152771_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354_36168990_36169829
91241	chr2	+	1663	9	NNC	ENSMUSG00000059005.14	novel	1734	10	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3750.0772575375	185	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7427	False	NA	NA	False	NA	NA	NA	75489556	75496465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493243_75495604_75495646_75495741
91242	chr7	+	2145	11	Antisense	novelGene_ENSMUSG00000030521.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1223	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGCGAGCCGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	64026327	64041966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_64026552_64026914_64027143_64028484_64028594_64030677_64030789_64032638_64032776_64034048_64034118_64035426_64035569_64037196_64037365_64038612_64038772_64039194_64039880_64041853
91243	chr15	-	8592	12	NIC	ENSMUSG00000055065.8	novel	4732	13	NA	NA	0	0	intron_retention	FALSE	canonical	3	53	junction_1	14.2347497053357	574	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	NA	False	NA	NA	NA	79430760	79411936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79414719_79415872_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
91244	chr3	+	1170	10	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	27	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	788.669202588202	25	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAATCTCATTTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	79498698	79510584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506390_79507670_79507707_79509578_79509666_79509749_79509793_79510337
91245	chr5	+	2910	20	ISM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	32157	2054	-3462	1812	3prime_fragment	FALSE	canonical	3	392	junction_8	204.917847196683	10	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCAACCCCACTGTGATT	NA	False	NA	NA	False	NA	NA	NA	75767771	75815328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
91246	chr2	+	11239	5	Antisense	novelGene_ENSMUSG00000085513.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	222	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAACCATTACTTTTCC	NA	False	NA	NA	False	NA	NA	NA	177107037	177477595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177107498_177227589_177228618_177228670_177232515_177232581_177233363_177472469
91247	chr6	+	3038	13	NIC	ENSMUSG00000038388.15	novel	1281	10	NA	NA	-193	280	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	312.40984255017	349	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATGTCTCTAAGCTGC	NA	False	NA	NA	False	NA	NA	NA	50087646	50176199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_50088108_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
91250	chr18	+	2592	3	NNC	ENSMUSG00000057561.11	novel	2865	3	NA	NA	627	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	855	33	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	46731707	46743278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_46731768_46740570_46741461_46741636
91252	chr1	+	1469	8	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	65	junction_1	57.8389742195996	7	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	NA	False	NA	NA	NA	75187496	75190886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75187669_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
91253	chrX	+	4587	7	NNC	ENSMUSG00000041649.14	novel	4407	8	NA	NA	231	-118	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	56.3454129060703	77	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACAGCTCCTTATTCT	NA	False	NA	NA	False	NA	NA	NA	152142839	152179010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_152143023_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
91254	chr17	-	324	1	Intergenic	novelGene_157	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACCAGGCTGGCCTCAA	NA	False	NA	NA	False	NA	NA	NA	36542426	36542102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_36542100_36542400
91255	chr3	+	1264	4	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_1	7145.30588723969	126	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570352	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570838_137570972_137571280_137571395_137571771
91256	chr5	-	1466	6	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	8565	junction_1	2111.8941829552	23	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548741	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65545785_65545904_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
91257	chrM	+	1619	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-3	-71	-3	71	mono-exon	FALSE	NA	NA	NA	NA	NA	10	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-2	True	NA	NA	False	NA	NA	NA	5324	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
91258	chr2	-	1263	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-190	-73	190	mono-exon	FALSE	NA	NA	NA	NA	NA	219	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	28824694	28823431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
91259	chrM	+	2678	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-69	-1027	-69	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	8	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	331	False	NA	-47	True	NA	NA	NA	1024	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_3700
91260	chr1	-	4973	14	NNC	ENSMUSG00000022995.17	novel	11229	14	NA	NA	418	1837	intron_retention	FALSE	canonical	0	0	junction_13	109.20243402797	562	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAACTTTAAATGTAGCA	6380	False	NA	NA	False	NA	NA	NA	181846808	181730127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181846753
91261	chrX	+	3623	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112255.8	3597	6	-39	13	-39	-11	multi-exon	FALSE	canonical	2	7	junction_1	94.8113917206155	4	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTAATAGTCTTATTTT	NA	False	NA	NA	False	NA	NA	NA	163202865	163216896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163202965_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
91262	chr3	-	1865	14	NNC	ENSMUSG00000068922.15	novel	2093	15	NA	NA	-8	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	197.96410528742	166	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGTGTAGGGACCTGT	NA	False	NA	NA	False	NA	NA	NA	88821218	88816948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820231_88820764_88821010_88821099
91263	chr2	-	2398	20	NNC	ENSMUSG00000040383.17	novel	4352	34	NA	NA	24	5474	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	61.3448993470547	1	40	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATGTGACTGCCTACAAA	7926	False	NA	NA	False	NA	NA	NA	114005703	113957993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_113958141_113961015_113961258_113963447_113963618_113965132_113965301_113967350_113967530_113971349_113971492_113973468_113973590_113976108_113976212_113977369_113977474_113979419_113979534_113980879_113980997_113981999_113982065_113985445_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000558_114005572
91264	chr4	+	945	1	FSM	ENSMUSG00000082062.2	ENSMUST00000118517.2	552	1	-207	-186	-207	186	mono-exon	FALSE	NA	NA	NA	NA	NA	76	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGCAGAAGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	125397873	125398818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_125397900_125398800
91265	chr13	+	7642	6	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-31555	5879	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.3129047176698	362	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTCGTTTCACCTGTGTC	8355	False	NA	NA	False	NA	NA	NA	66689429	66729854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66689533_66711757_66712084_66720982_66721110_66721308_66721317_66722512_66727887_66728150
91266	chr18	+	2929	6	NIC	ENSMUSG00000024317.16	novel	3002	7	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_4	171.498804660557	5	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	21134414	21161281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21159142
91267	chr12	+	5242	2	Intergenic	novelGene_4366	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68604962	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605473_68605540
91268	chr3	+	2032	15	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	58	-5830	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	319.807978101146	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACTGTGTGTAACTGAGG	NA	False	NA	NA	False	NA	NA	NA	63883584	63924170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893061_63897598_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
91269	chr3	-	4247	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	248	-1530	25	1530	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	603	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCATACAAAACTTTGTC	NA	False	NA	NA	False	NA	NA	NA	36626051	36617483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
91270	chr15	+	3596	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	60	-3	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_11	225.328841329054	19	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGTTAATGTTGCAGTT	NA	False	NA	-34	True	NA	NA	NA	101982358	102005605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001531_102002092_102002149_102003106_102003213_102003411_102003485_102003687
91271	chr11	-	3477	15	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-14	-7	combination_of_known_splicesites	FALSE	canonical	3	40	junction_14	236.665407920385	756	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTCATGTCTGACTGCTC	NA	False	NA	NA	False	NA	NA	NA	95201048	95165091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95196971_95200860
91272	chr2	+	4279	2	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8577	1007	intron_retention	FALSE	canonical	2	3	junction_1	0	34	56	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGTTGGACAGTTGGAA	NA	False	NA	NA	False	NA	NA	NA	174919716	174932718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174919909_174928631
91273	chr13	+	2153	4	NIC	ENSMUSG00000036721.15	novel	2270	5	NA	NA	80	2	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	22.9927524813074	153	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTATACTGTCCTTTG	NA	False	NA	NA	False	NA	NA	NA	21547081	21553996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_21547346_21547749_21548222_21550784_21550927_21552721
91274	chr5	-	3498	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	-68	-861	-68	861	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	41	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAGTCATCAATAAATTC	NA	False	NA	NA	False	NA	NA	NA	24782533	24769481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
91275	chr7	-	1837	7	Antisense	novelGene_ENSMUSG00000059851.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGCCGCGCCTCCCCTCG	2512	False	NA	NA	False	NA	NA	NA	4750510	4743154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_4743230_4745606_4745726_4745943_4746109_4746244_4746264_4748798_4748936_4749073_4749259_4749373
91276	chr6	+	2146	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	57	8	57	-8	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	2	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTTAGTGGTCTTATCT	NA	False	NA	NA	False	NA	NA	NA	122684583	122691584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
91277	chr13	-	9953	24	Intergenic	novelGene_1378	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	307	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCTTCGGTGATTTGGA	NA	False	NA	NA	False	NA	NA	NA	55463265	55357594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55357687_55361014_55361964_55381707_55381842_55386500_55386672_55393326_55395889_55408154_55408280_55409354_55409625_55411142_55411254_55416258_55416335_55424333_55424453_55425342_55425487_55430469_55430593_55437864_55438067_55438941_55439116_55441361_55441522_55443790_55444004_55446374_55446488_55447501_55447772_55449537_55449657_55450651_55450790_55454744_55454854_55458147_55458351_55459754_55459794_55459928
91278	chr15	-	5268	1	Intergenic	novelGene_3228	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAACAAGACCGTTTTCT	9795	False	NA	NA	False	NA	NA	NA	22705095	22699827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699800_22705100
91279	chr2	-	3376	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	178.998836122846	1069	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGACCTAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	127673788	127643044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659357_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
91280	chr3	+	3564	20	NNC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-42	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	5012.94929694482	9	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACTAGCACCTAGCGCT	NA	False	NA	NA	False	NA	NA	NA	102927880	102965494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201_102964432_102964945
91281	chr1	+	1956	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-208	-530	-208	530	mono-exon	FALSE	NA	NA	NA	NA	NA	25165	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACTTGGAAACTGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	60742882	60744838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60742900_60744800
91282	chr15	+	2252	4	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	89	41	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGGTTTCCTCCAATCAC	77	False	NA	NA	False	NA	NA	NA	36771194	36793855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775549_36791007_36791235_36793724
91283	chr11	-	3046	13	ISM	ENSMUSG00000038909.17	ENSMUST00000092766.12	3414	15	6446	1	6357	-1	3prime_fragment	FALSE	canonical	3	566	junction_10	135.419384588109	7	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGACTGCTCTGAAGC	NA	False	NA	NA	False	NA	NA	NA	95193982	95165085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958
91284	chr19	+	3256	9	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-20	302	intron_retention	FALSE	canonical	3	91	junction_1	88.100705871179	27	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGTTAATAATCCCAG	NA	False	NA	NA	False	NA	NA	NA	38043516	38063173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38043766_38045857_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
91285	chr11	+	4891	16	FSM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	135	99	135	-99	multi-exon	FALSE	canonical	3	241	junction_14	38.0796825383593	1	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGTCAGAGCACACATTTG	NA	False	NA	NA	False	NA	NA	NA	29123024	29170698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
91286	chr2	-	949	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-73	175	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824694	28823446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28823454_28823752
91287	chr8	+	7270	20	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2098	intron_retention	FALSE	canonical	0	0	junction_14	770.576644890675	30	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760533	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777985_111778894_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
91288	chr8	-	677	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212796.2	679	4	2	0	1	0	multi-exon	FALSE	canonical	3	16397	junction_3	7152.95244403782	6	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	NA	False	NA	NA	NA	71350038	71348022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_71348354_71348559_71348690_71348776_71348957_71350002
91289	chr4	+	2273	9	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	71	-1876	multi-exon	TRUE	non_canonical	0	0	junction_1	39.7254247931976	1	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146200199	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200291_146207708_146207846_146291416_146291429_146312913_146312972_146388486_146388614_146390758_146390897_146391646_146392051_146392386_146393429_146552609
91290	chr16	-	1169	5	NNC	ENSMUSG00000040681.17	novel	2174	6	NA	NA	28	646	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2886.14405392385	120061	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAAATGCCTGATTAAT	NA	False	NA	NA	False	NA	NA	NA	95928901	95922787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928766
91291	chr9	+	1897	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	300	0	-10	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183627	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
91292	chr1	-	5731	40	NIC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-27	-42	combination_of_known_splicesites	FALSE	canonical	3	17	junction_38	284.428767648207	7	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTGGGCTGTGTGTATC	7860	False	NA	NA	False	NA	NA	NA	84817059	84702026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722892_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84792543_84792691_84816949
91293	chr4	+	4952	5	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-283	2912	multi-exon	FALSE	non_canonical	0	0	junction_1	41.4570560942284	2	37	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGACTTATCCTGATTT	NA	False	NA	NA	False	NA	NA	NA	145136531	145180370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136755_145138468_145138686_145138756_145138862_145173268_145173342_145176036
91294	chr9	+	1139	7	NNC	ENSMUSG00000032518.7	novel	1599	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	2025.0642788152	15	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956898	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119957052_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
91295	chr4	-	3044	15	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_10	344.824149208768	1445	11	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484690	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468054_116468135_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
91297	chr5	-	2366	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	231.847427399652	6	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1967	False	NA	NA	False	NA	NA	NA	138185473	138176878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182623_138182810_138185324
91298	chr4	-	4600	14	NNC	ENSMUSG00000028577.14	novel	2784	14	NA	NA	4	357	at_least_one_novel_splicesite	TRUE	canonical	3	15	junction_13	194.724049930412	464	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAGCATACACACATCT	NA	False	NA	NA	False	NA	NA	NA	94491368	94455393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478231_94491113
91299	chr9	-	2350	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	57	29	57	-29	multi-exon	FALSE	canonical	3	469	junction_6	51.6454257412987	1	81	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGTTAAAATAAAAGGGAC	NA	False	NA	NA	False	NA	NA	NA	64160856	64093080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
91300	chr6	-	1719	11	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2578.19154641388	60	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	0	True	NA	NA	False	NA	NA	NA	7693161	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677266_7680100_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
91301	chr7	-	1094	5	NIC	ENSMUSG00000030960.17	novel	1107	6	NA	NA	-11	227	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	142.065785817698	179	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAGAGATAATGTCTCAC	NA	False	NA	NA	False	NA	NA	NA	132454379	132428958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_132429612_132438828_132438937_132452323_132452439_132453154_132453221_132454227
91302	chr12	-	2739	14	ISM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	31254	1021	-2259	25	3prime_fragment	FALSE	canonical	3	259	junction_6	41.0574716261408	3	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTTTCCGTGTATTCA	NA	False	NA	NA	False	NA	NA	NA	69372685	69358316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692
91303	chr17	+	3206	12	FSM	ENSMUSG00000041130.11	ENSMUST00000234956.2	3352	12	146	0	86	0	multi-exon	FALSE	canonical	3	262	junction_10	128.150802179204	409	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGCTGGTGTTCTGAGTC	1322	False	NA	NA	False	NA	NA	NA	24888806	24900990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24888948_24895527_24895641_24896029_24896160_24896383_24896596_24896808_24897027_24897569_24897688_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854_24900006_24900082
91304	chr16	-	735	6	FSM	ENSMUSG00000058240.15	ENSMUST00000141664.9	762	6	-17	44	6	-44	multi-exon	FALSE	canonical	3	1466	junction_2	55.2268050859363	334	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGACAGTATTTGTCAAAG	9186	False	NA	NA	False	NA	NA	NA	91525505	91503774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
91305	chr14	+	3827	13	NIC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-5	-18	intron_retention	FALSE	canonical	3	1855	junction_3	152.488159831801	33	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAAATGGCTACAGTC	NA	False	NA	NA	False	NA	NA	NA	30271082	30296659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
91306	chr10	-	2168	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	3	-178	intron_retention	FALSE	canonical	3	1501	junction_10	185.925280690927	3908	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358252	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
91307	chr17	-	2414	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-6	1	intron_retention	FALSE	non_canonical	0	0	junction_7	3286.68282619422	1	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884203	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881619_45881949_45882104_45882338_45882546_45882690_45882838_45884092
91308	chr13	+	2691	5	Antisense	novelGene_ENSMUSG00000113135.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	84	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAAGATCCCGCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	65759955	65768078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_65761717_65761792_65762284_65763698_65763902_65764102_65764193_65767932
91309	chrX	+	3795	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	-201	0	-201	0	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	4	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	163202581	163216912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
91310	chr2	+	1177	6	Antisense	novelGene_ENSMUSG00000027342.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCGGCTTCCTAGGCGCG	NA	False	NA	NA	False	NA	NA	NA	132091205	132095100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_132091616_132091693_132091816_132093245_132093361_132093611_132093679_132093822_132093921_132094735
91311	chr1	-	1614	1	Antisense	novelGene_ENSMUSG00000101188.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	596	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTTCTTGATTTAAGC	NA	False	NA	NA	False	NA	NA	NA	60744497	60742883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_60742900_60744500
91312	chrM	+	1545	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	-703	-161	703	mono-exon	FALSE	NA	NA	NA	NA	NA	36	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGCCGCAGCATGATACT	-11	True	NA	NA	False	NA	NA	NA	7765	9310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9300
91313	chr2	-	2670	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	601	10	56	-10	multi-exon	FALSE	canonical	3	778	junction_1	38.262252939418	1	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGGTATATAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	26823339	26810061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
91314	chr7	+	3102	8	NIC	ENSMUSG00000003421.14	novel	1814	9	NA	NA	0	-44	intron_retention	FALSE	canonical	3	417	junction_1	68.1190434579982	2	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAGAGAAACAATTATAT	3134	False	NA	NA	False	NA	NA	NA	44711928	44727590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
91315	chr1	-	3039	4	NNC	ENSMUSG00000022995.17	novel	739	3	NA	NA	25	1456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	198.274220882763	380	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTTAGATGGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	181735944	181730508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181731961_181732015_181733463_181733951_181734010_181735862
91316	chr2	+	4873	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	-177	11	-177	-11	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	1678	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATATTTTATCACATTCC	6896	False	NA	NA	False	NA	NA	NA	23046203	23089261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
91317	chr10	-	2525	14	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-23	-6	intron_retention	FALSE	non_canonical	0	0	junction_11	663.25751601047	2	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTAGCCCTTAATGTCT	NA	False	NA	NA	False	NA	NA	NA	116899691	116886916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893824_116894002_116894104_116896552_116896756_116897202_116897487_116897929_116898052_116898733_116898788_116898880_116898956_116899610
91318	chrM	-	595	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCATCCTGATCATAGAAT	9986	False	NA	-1	True	NA	NA	NA	3710	3115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_3100_3700
91319	chrY	+	4069	2	Intergenic	novelGene_4705	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	100	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	47718852	47725614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_47722236_47724928
91320	chr15	+	1791	9	NNC	ENSMUSG00000009585.19	novel	1953	9	NA	NA	-62	-14	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	280.389907093676	1	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAGAAGTCAAAGAAAGAA	8184	False	NA	NA	False	NA	NA	NA	79776541	79792093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79776612_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790580_79790804_79791051_79791165_79791504
91321	chr1	+	3492	24	NNC	ENSMUSG00000026083.13	novel	7797	24	NA	NA	-13	-72	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	149.080838501524	11	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATTTTTATTACAAAT	1395	False	NA	NA	False	NA	NA	NA	38037196	38091030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058240_38060867_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686
91322	chrX	+	819	1	Antisense	novelGene_ENSMUSG00000082926.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1045	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAATTTTTAAGCCATTA	NA	False	NA	NA	False	NA	NA	NA	68649076	68649895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_68649100_68649900
91323	chr4	+	4004	1	Antisense	novelGene_ENSMUSG00000003038.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGGTGTCTCAGGCTGGCT	3408	False	NA	NA	False	NA	NA	NA	133689712	133693716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133689700_133693700
91324	chr15	-	2335	18	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	44	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGAAAGTGCCTTGTCCG	NA	False	NA	NA	False	NA	NA	NA	12890201	12834324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12834746_12837365_12837460_12842140_12842254_12842385_12842618_12846152_12846292_12848135_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865185_12866649_12866730_12867679_12867753_12878738_12878913_12881707_12881834_12883251_12883350_12885071_12885179_12889701_12889811_12890117
91325	chr17	+	1698	4	ISM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	5936	479	-890	-3	3prime_fragment	FALSE	canonical	3	1763	junction_1	168.239908067814	13	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGAGTTGTGTCTAGAA	NA	False	NA	NA	False	NA	NA	NA	29257537	29261868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29257599_29259748_29259788_29260180_29260268_29260357
91326	chr17	+	4946	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	-281	-1586	-281	1586	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	273	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTTAAAAAAAAGTATT	NA	False	NA	NA	False	NA	NA	NA	95172064	95187335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
91327	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	147	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
91329	chr2	+	7622	14	NIC	ENSMUSG00000005506.17	novel	7579	14	NA	NA	-56	-1	combination_of_known_junctions	FALSE	canonical	3	151	junction_13	208.940975782508	478	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGAACTGTTTGTCTTC	1721	False	NA	NA	False	NA	NA	NA	90818034	90849834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
91330	chr17	-	5309	2	ISM	ENSMUSG00000024142.16	ENSMUST00000234686.2	3855	8	89	-2	84	-1	intron_retention	FALSE	canonical	3	94	junction_1	0	3	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGAGGCCGATTGCTTT	9711	False	NA	NA	False	NA	NA	NA	24697928	24692525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_24694926_24695019
91331	chr19	+	4516	2	Intergenic	novelGene_1254	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	143	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTTACTAATAGCCCCT	NA	False	NA	NA	False	NA	NA	NA	38363469	38369475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_38366188_38367677
91332	chr3	+	1928	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1192.63932998563	39	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986971	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90007006
91333	chr3	-	1778	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	20	1772	-9	-25	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	18	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATAAAGCATCTCTGGGG	NA	False	NA	NA	False	NA	NA	NA	108352494	108333952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
91334	chr19	-	2013	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1441.96220477515	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902314	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884415_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895750_15896818_15896889_15898299_15898361_15902227
91335	chr4	-	4472	3	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	52	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTGGACCCGCCCAATA	NA	False	NA	NA	False	NA	NA	NA	145180370	145158962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159031_145160314_145160382_145176033
91336	chr11	-	1181	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-48	-131	-48	131	mono-exon	FALSE	NA	NA	NA	NA	NA	174	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCTCCCTACTCTCTTGA	4413	False	NA	NA	False	NA	NA	NA	20286061	20284880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284900_20286100
91337	chr17	+	1071	9	NIC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	6	-2	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	40.2086355774478	21	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTACAAGTGATGTGGCA	8836	False	NA	NA	False	NA	NA	NA	79143001	79152785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_79143108_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
91338	chr2	-	1593	8	NNC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	71	-30	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	13.2741885489341	8	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATTCAAATGTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	166349920	166341990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349381_166349483_166349807
91339	chr18	+	1252	3	Intergenic	novelGene_4497	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	59	132	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAACAAGACCGTTTTC	NA	False	NA	NA	False	NA	NA	NA	9592760	9597943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_9592989_9594874_9595058_9597102
91340	chr15	+	3952	13	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	-6	164499	intron_retention	TRUE	non_canonical	0	0	junction_12	297.150483294613	6	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGATTGGTAGTAACAT	NA	False	NA	NA	False	NA	NA	NA	80832698	81019646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80850384_80851312_80851403_80851789_80851967_80852862_80853216_81019529
91341	chr19	-	1527	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	0	598	combination_of_known_splicesites	FALSE	canonical	3	40	junction_4	328.565569305935	12	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAACTGTTGTGCCTGTGG	NA	False	NA	NA	False	NA	NA	NA	41921735	41911406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41919794_41919870_41921487_41921604_41921690
91342	chr17	+	2312	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	48	-511	48	511	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTAGCTGTCGCGTTCCG	NA	False	NA	23	True	NA	NA	NA	40157291	40159603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159600
91343	chr5	+	3387	11	Fusion	ENSMUSG00000058013.12_ENSMUSG00000107374.2	novel	1119	3	NA	NA	-797	-1715	multi-exon	FALSE	canonical	0	0	junction_1	300.853718607565	1	11	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTTTTTTGATGCCAAA	NA	False	NA	NA	False	NA	NA	NA	93240498	93321102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_93240568_93240662_93240829_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93319197
91344	chr14	-	2516	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	164	11	0	-11	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCTTTACCCTGCT	4859	False	NA	NA	False	NA	NA	NA	54754818	54744654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
91345	chr16	-	1483	6	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-1812	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	469.825329244816	1	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGCTTTCTCAAGACTG	8640	False	NA	NA	False	NA	NA	NA	33787408	33776975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782441_33784148_33784296_33787195
91346	chr3	+	3242	26	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	21	-6	intron_retention	FALSE	canonical	3	79	junction_22	121.131822408482	575	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCAGTCGTGGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	54600303	54636177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629974_54630062_54633390_54633497_54634989_54635118_54635764
91350	chr5	+	2843	7	NIC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	-29	-9	intron_retention	FALSE	canonical	3	7026	junction_3	376.251688811271	103	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAATTTACCTGTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	108048408	108056862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108052761_108055054_108055144_108055762
91351	chr4	+	2706	11	NIC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	4	-11	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	273.7542693731	1522	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTAGAAACTTGGTTTC	580	False	NA	NA	False	NA	NA	NA	118965911	118994516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118966170_118973203_118973318_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
91352	chr5	-	4112	19	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	15430	3	1130	-3	3prime_fragment	FALSE	canonical	3	530	junction_12	215.348504510855	23	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGGTGTCAATTTCA	NA	False	NA	NA	False	NA	NA	NA	110942533	110932356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450
91353	chrM	+	773	1	FSM	ENSMUSG00000064353.1	ENSMUST00000082404.1	70	1	-771	68	-771	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	927	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	14	False	NA	32	True	NA	NA	NA	6170	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6200_6900
91354	chrM	+	1931	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	442	-791	442	791	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATCTTCCTAGGACCCC	-1	True	NA	19	True	NA	NA	NA	1535	3466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3500
91355	chr13	-	4617	9	Fusion	ENSMUSG00000113450.2_ENSMUSG00000074865.12_ENSMUSG00000113841.2_ENSMUSG00000072066.8	novel	2492	4	NA	NA	46	-476	multi-exon	FALSE	non_canonical	0	0	junction_1	26.4643037883108	9	53	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCAAACCTGACCTTGT	NA	False	NA	NA	False	NA	NA	NA	62771948	62597606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62599173_62600616_62603008_62604500_62604562_62604746_62604874_62640180_62640241_62640621_62640749_62667985_62668047_62668231_62668359_62771851
91356	chr16	+	5423	2	FSM	ENSMUSG00000022884.17_ENSMUSG00000065208.3_ENSMUSG00000087935.3	ENSMUST00000134816.2	776	2	0	-4647	0	0	multi-exon	FALSE	canonical	3	1632	junction_1	0	141	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337
91357	chr9	+	4382	11	Intergenic	novelGene_1062	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	225	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGCCAGAAAACTGAGCGA	NA	False	NA	NA	False	NA	NA	NA	58124469	58157015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58126011_58126792_58126953_58127105_58127853_58128997_58129152_58136640_58136691_58137110_58137369_58137772_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156825
91358	chr9	+	4056	22	NNC	ENSMUSG00000042557.15	novel	4899	21	NA	NA	33	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	101.309341950483	19	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTTAAGGAAATAAGTAAC	NA	False	NA	NA	False	NA	NA	NA	56979356	57035633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56979501_56988378_56988487_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032538_57035332
91359	chr4	+	2653	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	545	3	NA	NA	29	-7	multi-exon	TRUE	non_canonical	0	0	junction_2	38.3130381057009	1	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTGCTTTGATTGT	NA	False	NA	NA	False	NA	NA	NA	145136864	145265751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136997_145138756_145138851_145143776_145143848_145173282_145173342_145174456_145174578_145176036_145176277_145263815
91361	chr9	+	1022	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-2	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2502.02984261446	3	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTAAAAGCTGTCTTATG	NA	False	NA	NA	False	NA	NA	NA	119956852	119960612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957683_119958223_119958385_119959214_119959430_119959833_119959963_119960065_119960232_119960465
91362	chr12	+	5184	2	Intergenic	novelGene_4379	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	68605039	68610270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68606174_68606220
91363	chr5	+	5262	22	NNC	ENSMUSG00000005672.13	novel	5214	21	NA	NA	41	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	372.075809699133	1503	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATAAATTTTTCTGTTT	807	False	NA	NA	False	NA	NA	NA	75735655	75817377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75799914_75800009_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
91364	chr14	-	3752	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5300	-4316	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	49	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAATTTGTGTATGAGT	2172	False	NA	NA	False	NA	NA	NA	51039889	51035577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51036607_51037166
91365	chr4	-	2399	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	89	34	-65	-34	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	1	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAAATAAAACATCCCAA	NA	False	NA	NA	False	NA	NA	NA	137523606	137469077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
91366	chr14	+	2684	6	NNC	ENSMUSG00000037628.11	novel	1952	5	NA	NA	14	-8	intron_retention	FALSE	non_canonical	0	0	junction_5	95.141158285991	26	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAGACCATCAAGGTAAG	NA	False	NA	NA	False	NA	NA	NA	46998065	47007378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47005526_47005811
91367	chrUn_JH584304v1	-	7086	25	Intergenic	novelGene_4588	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	266.92897255429	36	83	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGATGAGAGAGCATCA	NA	False	NA	NA	False	NA	NA	NA	59716	4975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_5083_6910_7010_14082_14201_19241_19343_20216_20376_31431_31497_38111_38244_39079_39163_39431_39611_40108_40185_41047_41125_41972_42076_44211_44310_47515_47676_47921_47997_48579_48654_48765_48944_49049_49969_50092_50280_51411_51539_51644_54480_54720_54868_55111_55702_58563_58836_59591
91368	chr5	-	4376	4	NNC	ENSMUSG00000029270.11	novel	884	4	NA	NA	63019	6138	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCTTTTAAAGTAGGCCT	8373	False	NA	NA	False	NA	NA	NA	108057845	108049780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108049997_108051129_108051269_108051530_108052760_108055053
91369	chr17	+	1794	1	Intergenic	novelGene_220	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTGTGAGGACCCCCTT	NA	False	NA	NA	False	NA	NA	NA	40153889	40155683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155700
91371	chr13	-	2272	6	Fusion	ENSMUSG00000113450.2_ENSMUSG00000113841.2	novel	2492	4	NA	NA	-1	100708	multi-exon	TRUE	non_canonical	0	0	junction_1	17.7696370249929	17	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCAATTTCTTTTAATTT	9537	False	NA	NA	False	NA	NA	NA	62614621	62496422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62496517_62597824_62598539_62601832_62603008_62604500_62604562_62604746_62604874_62614520
91372	chr7	-	973	9	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5655.93367071255	39	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTGTACGATGTGTGC	NA	False	NA	NA	False	NA	NA	NA	44778160	44774989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775150_44775190_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
91373	chr7	-	1951	9	NNC	ENSMUSG00000030605.16	novel	2008	9	NA	NA	-70605	-105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	523.018388180569	2	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCGGTGGCTCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	78869413	78783621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792767_78794850_78795127_78795369_78795493_78869317
91374	chrM	+	975	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	849	0	-849	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTACACATCTGTACCCA	-4	True	NA	4	True	NA	NA	NA	11741	12716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_12700
91375	chr8	+	2023	8	NIC	ENSMUSG00000060038.15	novel	1333	9	NA	NA	-27	-4	intron_retention	FALSE	canonical	3	210	junction_2	33.4621321154867	43	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTTCTGAGTCAGTCTG	NA	False	NA	NA	False	NA	NA	NA	85798358	85801776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85798683_85799080_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
91376	chr4	+	4975	20	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_3	183.870904972187	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390662	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396515_130428352_130428422_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
91377	chr2	-	2826	19	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	-1	0	intron_retention	FALSE	non_canonical	0	0	junction_8	137.050871423806	580	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	120234563	120185792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120234385
91378	chr13	-	1739	4	Antisense	novelGene_ENSMUSG00000058900.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATAGCCGCATACGATTT	1288	False	NA	NA	False	NA	NA	NA	67331251	67321294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_67321371_67324509_67324635_67325125_67325223_67329810
91379	chr19	+	3535	16	NIC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	-22	-23	intron_retention	FALSE	canonical	3	728	junction_3	59.4730190926945	16	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGTTTTCTTCAGCTCC	3447	False	NA	NA	False	NA	NA	NA	8919216	8929644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
91380	chr4	+	3013	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-20	-1	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	80.5869096069579	727	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	146033847	146063190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146038203_146038353_146054375_146054480_146058453_146058581_146060726
91381	chr14	-	4664	22	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-183	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.1274871673221	42	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655420	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650184_54650242_54651336_54651471_54654045_54654228_54655357
91382	chr7	-	8408	6	Antisense	novelGene_ENSMUSG00000108481.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	53	48	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACAGGTCCCTGGGGCTT	NA	False	NA	NA	False	NA	NA	NA	129342174	129161290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_129164712_129167082_129167206_129167274_129168432_129336011_129338684_129341054_129341170_129341254
91383	chr4	+	3637	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	4	61	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	205.595330686278	1458	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACTATTTCTCATAAAGT	NA	False	NA	NA	False	NA	NA	NA	145397258	145431072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397412_145399301_145399395_145422720_145422806_145425813_145425941_145427474_145429371_145429789
91384	chr1	+	3760	24	NNC	ENSMUSG00000026083.13	novel	7797	24	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	149.080838501524	4	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTTCTACAGATTTTG	1417	False	NA	NA	False	NA	NA	NA	38037218	38091102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058420_38060829_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686
91385	chr5	-	3663	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	32	-1293	-3	1255	multi-exon	FALSE	canonical	3	396	junction_3	47.2513937876549	3	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAGTTTTAGTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	8472684	8445717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
91386	chr4	+	2768	5	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	-2	-35	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	184.711937892492	25	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTACATATTAAAGCTTGA	NA	False	NA	NA	False	NA	NA	NA	98615027	98626682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98624761_98625054
91387	chr1	-	4887	15	Intergenic	novelGene_427	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCAGCACCCACTCGAAC	NA	False	NA	NA	False	NA	NA	NA	118608578	118555696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118555800_118559982_118560119_118580022_118580106_118580596_118580703_118581443_118581550_118584094_118584249_118586735_118586847_118589707_118589800_118592486_118592538_118592627_118592717_118593840_118593935_118596358_118596464_118597117_118597260_118603302_118603355_118605115
91388	chr12	+	3486	10	FSM	ENSMUSG00000021175.16	ENSMUST00000021592.16	2957	10	381	-910	8	910	multi-exon	FALSE	canonical	3	107	junction_2	34.4673758792282	219	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGACTAAGACAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	117807630	117843351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
91389	chr17	-	4393	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	245	15	-13	-15	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	1	148	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTAATAACCTGCTTGG	NA	False	NA	NA	False	NA	NA	NA	28841438	28806636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
91391	chr9	-	2600	17	NIC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_14	444.014846141151	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGGACCAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	36678912	36643721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36674632_36674694_36676349_36676477_36678845
91393	chr13	-	466	1	Intergenic	novelGene_1411	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTACAGTGTACTTATGT	NA	False	NA	NA	False	NA	NA	NA	64517793	64517327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_64517300_64517800
91395	chr2	+	4431	19	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	69	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGTAAGATAGAAAGATAAA	1087	False	NA	NA	False	NA	NA	NA	4995558	5015993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4997071_4997172_4997835_4998553_4998667_4999379_4999496_5000533_5000673_5001910_5002144_5003344_5003453_5003539_5003646_5004484_5004594_5005672_5005868_5006074_5006194_5008820_5008985_5009751_5009922_5011153_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499
91397	chr15	-	2609	9	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-6	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	858.820330089478	3	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGATCTTGACCTTCCCCC	NA	False	NA	NA	False	NA	NA	NA	81283801	81247873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81261959_81273877_81273925_81276465_81276524_81283685
91398	chr4	+	3087	15	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.257539376818856	17	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCATGAATTCTCTAGCAT	NA	False	NA	NA	False	NA	NA	NA	135048033	135071905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054535_135056314_135056356_135056682_135056831_135059034_135059122_135059471_135059550_135065114_135065392_135067814_135067934_135068157_135068349_135069682_135069885_135071174_135071291_135071809
91399	chr7	+	2912	3	NNC	ENSMUSG00000064194.11	novel	1368	3	NA	NA	-323	-185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	235	1	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCCAGGTTGGGGGCACT	NA	False	NA	NA	False	NA	NA	NA	42836270	42841348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42836721_42836916_42836978_42838947
91400	chr19	+	4594	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	1009.02038576477	145	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1476	False	NA	NA	False	NA	NA	NA	44282521	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44293422_44293873
91401	chr11	-	1199	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-53	-144	-53	144	mono-exon	FALSE	NA	NA	NA	NA	NA	9	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTTGAATACCATCAATAA	4408	False	NA	NA	False	NA	NA	NA	20286066	20284867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284900_20286100
91402	chr17	-	2236	1	FSM	ENSMUSG00000093009.3	ENSMUST00000175268.3	66	1	-1455	-715	-1455	715	mono-exon	FALSE	NA	NA	NA	NA	NA	269	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGACTTTTTCTGTGTCA	6006	False	NA	NA	False	NA	NA	NA	35171448	35169212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169200_35171400
91403	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	119	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
91404	chr1	-	726	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-31	-41	-31	41	mono-exon	FALSE	NA	NA	NA	NA	NA	39	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033794	65033068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
91405	chr4	+	4228	8	Intergenic	novelGene_2071	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	157.644912278662	3625	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146365110	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146428065_146428160_146435241_146435318_146797298_146797381_146800390_146800518_146802050_146803197_146803365_146803919_146804002
91406	chr5	-	2714	16	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	-6438	-1978	at_least_one_novel_splicesite	FALSE	non_canonical	3	600	junction_14	77.905241586601	4	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTAGAATTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	27977173	27947055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_27947498_27949108_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971289_27977001
91407	chr8	-	4170	6	NIC	ENSMUSG00000001910.6	novel	4344	6	NA	NA	48	-4	combination_of_known_junctions	FALSE	canonical	3	136	junction_5	189.167227605629	1	51	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGCCCTGCTGTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	85413734	85397111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85399934_85401393_85401492_85401627_85401734_85402713_85402888_85402969_85403882_85413676
91408	chr8	+	596	2	Genic_Genomic	ENSMUSG00000095762.2	novel	342	1	NA	NA	-154	172	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATATATATATATATAT	NA	False	NA	NA	False	NA	NA	NA	123568315	123568983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_123568334_123568405
91409	chrM	-	1929	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	400	-1810	400	1810	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTTATTTGGATTTGCA	2518	False	NA	NA	False	NA	NA	NA	13670	11741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11700_13700
91410	chr14	+	2684	12	NNC	ENSMUSG00000025555.15	novel	4885	27	NA	NA	6580	-64	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	37.0706272533751	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAACAAAAGGGAATAAAAAT	NA	False	NA	NA	False	NA	NA	NA	121498899	121521092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121498980_121505284_121505367_121509091_121509330_121510155_121510287_121512786_121512856_121512997_121513088_121513648_121513732_121513804_121513918_121514310_121514478_121517247_121517356_121518231_121518384_121519721
91412	chr16	-	1812	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	33	549	19	113	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGTCTGTTTAATCACT	NA	False	NA	NA	False	NA	NA	NA	87292728	87280762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
91413	chr8	+	5867	8	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	-2	1418	intron_retention	FALSE	non_canonical	0	0	junction_6	40.4545600466923	318	114	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAATCTCACCCAAACT	NA	False	NA	NA	False	NA	NA	NA	85635316	85642568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637821_85637964_85640490_85640535
91414	chr9	-	2644	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	-187	-41	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	95	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTTGTCTTATCATTAT	NA	False	NA	NA	False	NA	NA	NA	4309658	4294834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
91415	chr18	-	3747	4	Intergenic	novelGene_4504	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	6.12825877028341	45	63	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCAGCCCAGCCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	10275995	10269537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_10269549_10270735_10271265_10271774_10274701_10275714
91416	chr13	-	8770	2	Intergenic	novelGene_1496	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	77	133	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATACAATTTATAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	87522946	87497052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_87502211_87519334
91417	chr1	+	2592	18	ISM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	37391	632	28	3	3prime_fragment	FALSE	canonical	3	77	junction_11	103.783078272135	1	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTCAGTGGCGTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	44010557	44041499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
91418	chrM	+	1412	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-452	-3	-452	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	13	False	NA	-11	True	NA	NA	NA	2298	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2300_3700
91419	chr16	+	2926	10	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-7	intron_retention	FALSE	canonical	3	675	junction_9	453.770132703039	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTTATATAGGTGGTCT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930647_22931100
91420	chr2	+	2760	14	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	8	-3	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	65.799947842644	257	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTTCCAGTGCTTGCTT	4053	False	NA	NA	False	NA	NA	NA	180609045	180624316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
91421	chr11	-	1507	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-15	-7	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_4	975.221800412604	1	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCACAGGTCTGAACCTTG	9570	False	NA	NA	False	NA	NA	NA	5828227	5822194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823504_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828187
91423	chr14	+	5886	18	ISM	ENSMUSG00000041408.19	ENSMUST00000048263.14	6351	19	3058	0	2813	0	3prime_fragment	FALSE	canonical	3	770	junction_2	83.4594155769312	585	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGTTGTCTTTAACATAAG	NA	False	NA	NA	False	NA	NA	NA	34398942	34469940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_34399432_34413638_34414692_34416943_34417063_34444220_34444317_34446662_34446816_34447084_34447222_34447856_34447969_34451136_34451365_34452505_34452618_34453465_34453567_34455687_34455765_34458626_34458803_34459227_34459344_34459812_34459978_34461187_34461396_34463013_34463103_34466765_34466862_34467581
91424	chrM	+	905	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	49	1	49	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	8	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	6	False	NA	24	True	NA	NA	NA	118	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_100_1000
91425	chr1	-	5626	18	NNC	ENSMUSG00000026235.15	novel	6315	18	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	41.6127309505472	5	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAAATCTGGTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	77491724	77343825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_77346287_77350221_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
91426	chr10	+	1255	8	NNC	ENSMUSG00000040034.16	novel	1286	8	NA	NA	-7	-2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_5	436.594614193598	4022	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCAATGTTGGCTTGCTG	NA	False	NA	NA	False	NA	NA	NA	7543259	7554643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550805_7550922_7552003_7552127_7554331
91427	chr13	+	4309	3	FSM	ENSMUSG00000021360.17	ENSMUST00000069958.15	3929	3	-389	9	-389	-5	multi-exon	FALSE	canonical	3	51	junction_1	65	198	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACCTTCAGGAATAGTGG	NA	False	NA	NA	False	NA	NA	NA	41040279	41114358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_41041762_41107051_41107148_41111627
91428	chr11	+	5779	36	Antisense	novelGene_ENSMUSG00000002052.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	11	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAGGAGAGGAAGAAGG	3118	False	NA	NA	False	NA	NA	NA	78097849	78124511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_78098594_78098873_78099062_78099675_78099847_78099929_78100008_78100251_78100362_78102621_78102748_78102908_78103022_78103493_78103734_78104092_78104287_78107028_78107170_78108664_78108812_78109994_78110141_78110707_78110917_78111946_78112075_78112935_78113103_78113172_78113311_78113594_78113731_78113978_78114056_78115190_78115317_78115428_78115561_78116131_78116326_78116486_78116644_78116771_78116926_78117007_78117140_78117504_78117597_78117713_78117865_78119453_78119598_78119779_78119868_78120220_78120337_78120988_78121096_78121755_78122030_78122598_78122688_78122846_78123040_78123330_78123408_78123500_78123660_78124370
91429	chr4	-	1237	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	-50	-376	-50	-26	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	332	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCTTCTCAGGGCAGC	NA	False	NA	NA	False	NA	NA	NA	148236432	148230198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
91430	chr6	-	4878	4	NNC	ENSMUSG00000057666.19	novel	769	2	NA	NA	43	8299	intron_retention	FALSE	non_canonical	0	0	junction_1	0	126	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGCTGCTGGAGAAAGG	NA	False	NA	NA	False	NA	NA	NA	125142496	125130378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_125130464_125136019_125136155_125137494_125142025_125142368
91431	chr12	+	4097	1	Genic_Genomic	ENSMUSG00000010608.16	novel	NA	NA	NA	NA	-3326	-7371	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACCTCAAGATGGCGTC	1837	False	NA	NA	False	NA	NA	NA	83674683	83678780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_83674700_83678800
91432	chr5	+	1405	5	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGTTCAGGGGGGCCTCGG	NA	False	NA	NA	False	NA	NA	NA	142888884	142891018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889526_142889580_142889697_142889821_142890001_142890095_142890540_142890993
91433	chr9	+	937	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	100	901	0	-91	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	8	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	119956854	119960534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
91434	chr10	-	4324	15	NNC	ENSMUSG00000020114.13	novel	7766	15	NA	NA	-190	-3109	at_least_one_novel_splicesite	FALSE	canonical	1	12	junction_14	196.82023290717	289	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATTCTTCACAATACAC	788	False	NA	NA	False	NA	NA	NA	119075398	119038268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355_119052613_119053845_119053970_119055494_119055650_119063307_119063452_119075316
91436	chr8	+	4425	3	FSM	ENSMUSG00000031548.8	ENSMUST00000033952.8	4372	3	333	-386	333	386	multi-exon	FALSE	canonical	3	1172	junction_2	95.5	376	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCCAAGAAGACTTTGGG	NA	False	NA	NA	False	NA	NA	NA	23901850	23940034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_23902345_23907345_23907424_23936181
91437	chr2	-	4778	6	NNC	ENSMUSG00000075467.5	novel	2916	3	NA	NA	10	5890	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	166.065047496455	721	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAATACCCGCCCTCGCTGC	NA	False	NA	NA	False	NA	NA	NA	26242102	26232242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26232441_26234609_26234769_26235160_26235368_26236814_26240571_26241346_26241487_26241784
91438	chr8	+	3986	14	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-27	-9	intron_retention	FALSE	non_canonical	0	0	junction_8	277.661387581792	2	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5022	False	NA	NA	False	NA	NA	NA	107329955	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384918_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
91439	chr13	-	3285	4	Antisense	novelGene_ENSMUSG00000063905.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGCATGTCTCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	65662668	65651716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65651858_65658191_65658317_65658516_65658579_65659711
91440	chr14	+	2551	6	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	1167	-1889	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218.936520480252	58	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTTTAAATGTGCATTC	NA	False	NA	NA	False	NA	NA	NA	52524357	52531969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52524377_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657
91441	chr11	-	1183	12	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5898.47077954872	6	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113075	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102652_33102747_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
91442	chr10	-	3199	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	17	2	17	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	102	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	35587871	35584672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_35584700_35587900
91444	chr9	+	5431	21	Antisense	novelGene_ENSMUSG00000111069.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.435889894354067	30	71	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTCTCTTCGCATGC	3501	False	NA	NA	False	NA	NA	NA	22243313	22293517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_22244469_22245296_22245471_22249227_22249336_22250297_22250381_22262211_22263548_22264077_22264138_22264628_22264675_22267349_22267477_22269417_22269601_22269909_22270044_22271704_22271854_22272117_22272264_22273981_22274221_22275288_22275395_22279679_22279808_22283450_22283559_22284435_22284627_22286221_22286437_22287432_22287819_22291345_22291652_22293466
91445	chr10	+	8359	31	NNC	ENSMUSG00000040054.18	novel	2455	13	NA	NA	646	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	143.760375470974	647	36	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGATTGCATGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	127929297	127965172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127929388_127932246_127932393_127944762_127944901_127946623_127947218_127948450_127948637_127949328_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955187_127955282_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
91446	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1270	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
91447	chr5	-	3502	13	NNC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	16	0	intron_retention	FALSE	canonical	1	2	junction_12	111.175536877498	5	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	123060154	123008730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123060064
91448	chr1	+	3652	21	Antisense	novelGene_ENSMUSG00002076189.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCCCCGGCCTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	131220321	131455271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_131220578_131224050_131224192_131226057_131226251_131228130_131228214_131238214_131238437_131244866_131244973_131247262_131247397_131248171_131248250_131252824_131252886_131259853_131259882_131264110_131264215_131272087_131272282_131273496_131273604_131277191_131277417_131283250_131283378_131284427_131284646_131291740_131291805_131339540_131339700_131364411_131364608_131452676_131453334_131454972
91450	chr5	+	386	1	Intergenic	novelGene_922	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
91451	chr16	+	3241	8	ISM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	196	0	-6	intron_retention	FALSE	canonical	3	563	junction_3	520.662137306421	2	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTATATAGGTGGTCTG	6053	False	NA	NA	False	NA	NA	NA	22926507	22932690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252
91452	chr2	-	4556	6	NNC	ENSMUSG00000078881.11	novel	1497	4	NA	NA	-3	2788	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	100.169855745129	65	4	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	176178579	176162282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176166377_176167533_176167595_176167799_176167927_176173543_176173646_176174950_176175006_176178462
91453	chr11	-	4395	1	Intergenic	novelGene_2308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450027	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445600_57450000
91454	chr18	+	2701	9	Antisense	novelGene_ENSMUSG00000094306.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	138	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGCTCCAGGGCCCGCGG	NA	False	NA	NA	False	NA	NA	NA	14758685	14815823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_14760368_14766598_14766732_14769550_14769671_14773308_14773418_14774011_14774180_14784075_14784301_14803363_14803448_14812440_14812521_14815723
91455	chr3	-	2723	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	238	4	15	-4	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	496	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCCATTTGGTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	36626061	36619017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
91456	chr13	-	6312	4	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7476	4561	at_least_one_novel_splicesite	FALSE	canonical	3	150	junction_1	38.262252939418	170	120	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTTTTACAAGAGGTGCC	NA	False	NA	NA	False	NA	NA	NA	66828869	66813430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66819455_66821007_66821069_66821267_66821395_66828769
91457	chr15	-	4908	16	FSM	ENSMUSG00000023030.17	ENSMUST00000138843.8	4415	16	-27	-466	26	466	multi-exon	FALSE	canonical	1	68	junction_8	31.7016648704063	185	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAGAAACCGAAGTCACT	NA	False	NA	NA	False	NA	NA	NA	100320910	100289977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
91458	chrX	+	10142	35	Intergenic	novelGene_4002	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	377	26	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCCTCCCGCCGCCCCTC	NA	False	NA	NA	False	NA	NA	NA	104841142	104972183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_104844063_104844953_104845083_104845586_104845680_104846290_104846421_104847388_104847542_104861639_104861832_104862947_104863127_104864381_104864489_104867312_104867422_104869706_104869859_104874451_104874627_104874800_104874880_104876051_104876182_104879913_104880034_104881844_104882021_104883446_104883584_104889101_104889278_104889397_104889546_104890289_104890400_104891185_104891328_104894640_104894879_104895572_104895672_104896887_104896984_104899463_104899638_104900063_104900227_104911458_104911529_104918164_104921180_104921972_104922041_104923514_104923625_104927912_104928023_104931315_104931445_104932597_104932651_104934521_104934579_104943486_104943600_104972093
91459	chrM	+	1565	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-187	0	-187	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-2	True	NA	NA	False	NA	NA	NA	9979	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10000_11500
91460	chr5	-	4052	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	2	64	junction_13	176.439469507251	931	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATACAGTTAGTCTTTA	8162	False	NA	NA	False	NA	NA	NA	100564039	100509512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
91461	chr7	-	3411	13	FSM	ENSMUSG00000035547.15	ENSMUST00000040971.14	4498	13	59	1028	59	-1028	multi-exon	FALSE	canonical	3	136	junction_9	14.761765552339	240	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATTCCTGGCTGCCACCT	NA	False	NA	NA	False	NA	NA	NA	97827422	97771793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97827250
91462	chr5	-	2110	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-73	-96	-73	96	mono-exon	FALSE	NA	NA	NA	NA	NA	58	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833628	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
91463	chr4	+	3245	11	ISM	ENSMUSG00000028948.17	ENSMUST00000084116.13	3722	12	1719	-3	1683	3	3prime_fragment	FALSE	canonical	3	617	junction_4	41.8173409006359	114	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAATAATAACAAAGATTG	374	False	NA	NA	False	NA	NA	NA	152125502	152144484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_152125724_152125973_152126102_152130151_152130288_152130404_152130493_152131003_152131102_152134991_152135154_152136214_152136516_152137054_152137167_152140504_152140683_152142247_152142382_152142797
91464	chr13	+	2531	4	Intergenic	novelGene_1441	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	168	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAAAGCTCCAGCCTTCG	NA	False	NA	NA	False	NA	NA	NA	66649787	66667586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66652037_66652809_66652877_66653228_66653267_66667409
91465	chr2	-	4654	6	NNC	ENSMUSG00000078903.11	novel	1956	6	NA	NA	7	-1062	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	92.1507460631763	443	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175048685	175033919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175038181_175039337_175039399_175039599_175039727_175039997_175040032_175044847_175044907_175048573
91466	chr1	-	3715	22	FSM	ENSMUSG00000026425.16	ENSMUST00000186543.7	3533	22	-186	4	-181	-1	multi-exon	FALSE	canonical	3	29	junction_1	23.367225143015	252	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGAGGTTGCCAGATCT	NA	False	NA	NA	False	NA	NA	NA	131455271	131222959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_131223278_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
91467	chr16	+	2081	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-4	intron_retention	FALSE	canonical	3	179	junction_10	601.687801106188	41	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
91468	chr14	+	1171	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-182	705	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669255	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669622_13669673
91469	chr1	-	1381	5	NNC	ENSMUSG00000026701.16	novel	2387	5	NA	NA	17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	766.832119828062	2	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAAAACCGTTGTCATGT	NA	False	NA	NA	False	NA	NA	NA	161078715	161068586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161075008_161078642
91470	chr17	+	3901	10	NIC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-9	3	intron_retention	FALSE	canonical	3	2129	junction_1	153.609975884895	190	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460712	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
91471	chr13	+	3888	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-61	2180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	91.7234293951115	232	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGACCTTGTCTGAAGAG	NA	False	NA	NA	False	NA	NA	NA	66261232	66272830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66269758_66270003
91472	chr5	+	583	5	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	1355	275	427	0	3prime_fragment	FALSE	canonical	3	14010	junction_1	1202.18080482929	2	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	80	True	NA	NA	NA	121343898	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
91473	chr15	+	1521	3	ISM	ENSMUSG00000075555.13	ENSMUST00000148028.2	905	4	-85	0	-85	0	intron_retention	FALSE	canonical	2	3	junction_1	0.5	205	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGCTTCAGTGTTGTA	3807	False	NA	NA	False	NA	NA	NA	79093425	79101583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_79093614_79094390_79094450_79100309
91474	chr4	+	3120	9	NIC	ENSMUSG00000033423.17	novel	1719	9	NA	NA	1018	2	combination_of_known_junctions	FALSE	canonical	3	18	junction_3	287.653844707489	6	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTGTCTGGAGCCACC	NA	False	NA	NA	False	NA	NA	NA	117408579	117531480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_117410241_117421817_117422096_117439796_117439914_117444981_117445178_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
91475	chr4	+	3190	9	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	184.133782886248	2	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGAATTTGTACTGCTCT	NA	False	NA	NA	False	NA	NA	NA	130390679	130508868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130470051_130508223
91477	chr2	-	2322	1	Genic_Genomic	ENSMUSG00000035949.16	novel	NA	NA	NA	NA	2123	295	mono-exon	FALSE	NA	NA	NA	NA	NA	66	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCTACAGTGTATTCATAT	NA	False	NA	NA	False	NA	NA	NA	34696552	34694230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_34694200_34696600
91478	chr9	+	1159	11	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_6	180.117989107141	766	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTTTATAGTTTGTATG	9118	False	NA	NA	False	NA	NA	NA	15217555	15228272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
91479	chr16	-	564	1	Intergenic	novelGene_3740	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1186	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
91480	chr1	+	3748	15	FSM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	0	-772	0	-4	multi-exon	TRUE	canonical	3	358	junction_1	36.8929090028677	365	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGAGCCTCTTCAGAGTC	NA	False	NA	NA	False	NA	NA	NA	78635599	78685456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
91481	chr5	+	3623	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	2	intron_retention	FALSE	non_canonical	0	0	junction_3	609.08056026185	7	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108208601	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255330_108255672
91482	chr11	+	1109	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	390	0	-115	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	5	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442386	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
91483	chr8	+	4186	20	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	23	-2098	intron_retention	FALSE	canonical	2	1913	junction_1	396.844457622513	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760570	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
91484	chrM	+	842	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	0	-161	0	mono-exon	FALSE	NA	NA	NA	NA	NA	243	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-11	True	NA	NA	False	NA	NA	NA	7765	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
91486	chr17	+	1444	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1	404	1	-404	mono-exon	FALSE	NA	NA	NA	NA	NA	15	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTTAGAGGGACAAGTG	NA	False	NA	-24	True	NA	NA	NA	40157244	40158688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40158700
91487	chrM	+	1026	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	319	200	319	-200	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAACACTGTCTCTTCT	240	False	NA	26	True	NA	NA	NA	5646	6672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5600_6700
91488	chr4	+	2611	8	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-31	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	185.650538509802	18	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGATTGTTTCCAA	863	False	NA	NA	False	NA	NA	NA	145237297	145265757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237376_145238293_145238465_145257427_145257486_145261385_145261513_145263160_145263781_145263864_145264201_145264368_145264379_145264546
91489	chr11	-	1749	3	NIC	ENSMUSG00000016559.15	novel	1993	4	NA	NA	3	-330	intron_retention	FALSE	canonical	3	12160	junction_2	1058	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915327	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_115914605_115914707_115914846_115915204
91490	chr4	+	2725	4	FSM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	33	293	-1	6	multi-exon	FALSE	canonical	3	813	junction_2	40.8493165997507	464	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATGTTGAATGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	134650935	134654689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_134651079_134651185_134651794_134652603_134654130_134654241
91491	chr9	+	5631	28	FSM	ENSMUSG00000032481.18	ENSMUST00000088716.12	5717	28	81	5	24	-5	multi-exon	FALSE	canonical	3	994	junction_27	99.253261289205	684	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTCCCATTCTCTGCA	2526	False	NA	NA	False	NA	NA	NA	109961128	110069241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944_110064122_110066886
91492	chr5	-	3919	5	FSM	ENSMUSG00000044968.17	ENSMUST00000060899.9	3724	5	2	-197	0	195	multi-exon	FALSE	canonical	3	17	junction_4	45.4883226773641	309	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTGGAAAAAATTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	21906392	21867703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21906202
91493	chr19	+	3597	13	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_11	259.501445082682	2	96	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGTTCAGAGTTATGTC	129	False	NA	NA	False	NA	NA	NA	46064293	46073967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072024_46072189_46072283_46072450
91494	chr4	-	3199	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.911926369325	12	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9496	False	NA	NA	False	NA	NA	NA	147894272	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845792_147889674_147889780_147891546_147891641_147893775
91495	chr11	+	3941	22	NIC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	151.090683226409	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	6241626	6306642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6241694_6246951_6247200_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
91496	chr18	-	2627	9	FSM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	0	-24	0	0	multi-exon	FALSE	canonical	3	40	junction_5	300.413048984228	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	14815823	14758687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
91497	chrX	+	5491	1	Intergenic	novelGene_3938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	164	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGACCGTTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	63976708	63982199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63976700_63982200
91498	chr15	+	1922	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-20	3	combination_of_known_junctions	FALSE	canonical	3	35	junction_6	264.608643802503	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGACAAGATTAAGTTGT	7482	False	NA	NA	False	NA	NA	NA	79775839	79792110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790580_79790804_79791051_79791165_79791504
91499	chr15	-	3234	1	Intergenic	novelGene_3222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCGTTTTCTCGTTGGTG	1956	False	NA	NA	False	NA	NA	NA	22703053	22699819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699800_22703100
91500	chr8	+	6877	23	NNC	ENSMUSG00000031731.17	novel	3692	23	NA	NA	18	1	intron_retention	FALSE	canonical	0	0	junction_6	46.8494158831788	374	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAACTTTGCTGCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	110505203	110590837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556312_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
91501	chrX	+	4045	7	NNC	ENSMUSG00000041649.14	novel	4407	8	NA	NA	-20	-453	intron_retention	FALSE	canonical	2	3	junction_1	55.3162624269653	4	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCTTTCCAGTTACAAG	NA	False	NA	NA	False	NA	NA	NA	152142588	152178340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_152142900_152143291_152143480_152153840_152153915_152165504_152166067_152167590_152167703_152168369_152168510_152175682
91502	chr4	-	4340	14	FSM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	103	-1659	-6	6	multi-exon	FALSE	canonical	3	626	junction_12	53.7532164993284	436	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATCCTGGTGCCATTATA	NA	False	NA	NA	False	NA	NA	NA	94491378	94455744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
91504	chr8	-	7200	8	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59822	4774	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	56.0444430058568	330	72	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCCCTGACTTGCCATG	NA	False	NA	NA	False	NA	NA	NA	117399908	117296364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117380271_117380432_117399859
91505	chr2	+	1838	7	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	45906	2	5562	-2	3prime_fragment	FALSE	canonical	3	555	junction_5	82.5240705626075	2	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTGTATATTAAGATTT	NA	False	NA	NA	False	NA	NA	NA	90553464	90566670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
91506	chr9	+	759	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-225	-44	225	mono-exon	FALSE	NA	NA	NA	NA	NA	12340	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCACCTGACACAAACACC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
91507	chr11	-	1258	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	130	245	0	-21	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTCAGTATTTTAATAAAG	NA	False	NA	NA	False	NA	NA	NA	33113076	33102531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
91509	chr11	-	2886	18	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTGGTGATGGTTGTAA	NA	False	NA	NA	False	NA	NA	NA	72342290	72335633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72335804_72336001_72336110_72336430_72336556_72336715_72336888_72336983_72337082_72337795_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
91510	chr11	-	450	1	FSM	ENSMUSG00000083061.2	ENSMUST00000118307.2	348	1	-62	-40	-62	40	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTGAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	49569946	49569496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_49569500_49569900
91511	chr3	+	2875	16	Antisense	novelGene_ENSMUSG00000002227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	37	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCCCTACCTCTGACG	NA	False	NA	NA	False	NA	NA	NA	104702147	104725495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702390_104704277_104704477_104704589_104704713_104706713_104706924_104707012_104707110_104707259_104707366_104707590_104707748_104708000_104708144_104708258_104708450_104708713_104708876_104709747_104709910_104710107_104710246_104711447_104711705_104711789_104712029_104712218_104712424_104725251
91512	chr1	+	2392	15	NIC	ENSMUSG00000026177.12	novel	2315	15	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	14.8311929970008	221	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	5010	False	NA	NA	False	NA	NA	NA	74414400	74425221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_74414481_74414760_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
91513	chr16	-	3578	2	FSM	ENSMUSG00000043140.11	ENSMUST00000052505.10	3391	2	-206	19	-206	-19	multi-exon	FALSE	canonical	3	58	junction_1	0	217	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGGTATGCACCACAAT	NA	False	NA	NA	False	NA	NA	NA	8455782	8451111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_8454257_8455349
91514	chr5	-	2780	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	12	4	10	-4	multi-exon	FALSE	canonical	3	1613	junction_7	125.046431376509	2158	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATCTGACCGTCATGCAC	NA	False	NA	NA	False	NA	NA	NA	117527100	117516171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
91515	chr3	+	1711	10	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-111	1343	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2286.20670787029	10	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGGGCTGGGGCGATC	NA	False	NA	NA	False	NA	NA	NA	88483071	88497069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88483288_88483545_88483689_88483806_88483911_88484401_88484504_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495706_88496882
91516	chr5	-	1717	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-62153	-2	intron_retention	FALSE	non_canonical	0	0	junction_5	1654.6796668842	1	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	142954662	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891327_142954639
91517	chr4	+	4134	2	Intergenic	novelGene_1805	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTC	NA	False	NA	NA	False	NA	NA	NA	17171792	17176296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_17171836_17172205
91518	chr8	+	1109	3	Intergenic	novelGene_1713	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1	38	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTTGCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	97845766	97865674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_97845943_97849393_97849496_97864843
91519	chr7	-	3234	28	NNC	ENSMUSG00000070814.18	novel	3110	4	NA	NA	-32704	47	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0.188852574577511	50	10	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTACAGGCTTATCCACG	9273	False	NA	NA	False	NA	NA	NA	13045351	13011158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_13011460_13014077_13014148_13016378_13016469_13019182_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025210_13025379_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
91520	chr1	+	3101	16	FSM	ENSMUSG00000032883.16	ENSMUST00000035779.15	3950	16	114	735	56	41	multi-exon	FALSE	canonical	3	149	junction_2	98.3136477470617	336	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATACTTGCTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	78635655	78684725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_78635821_78640857_78640998_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
91521	chr1	+	5460	2	Antisense	novelGene_ENSMUSG00000103999.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	82	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTCCCATGAAACACTAC	NA	False	NA	NA	False	NA	NA	NA	128015208	128030432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_128019747_128029510
91522	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3184	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
91523	chr19	+	3280	18	ISM	ENSMUSG00000024773.16	ENSMUST00000045351.13	6371	40	55	10043	55	-3	5prime_fragment	FALSE	canonical	3	75	junction_9	12.0109523260459	5	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTAAAAAAAACAGAAGCAC	8999	False	NA	NA	False	NA	NA	NA	6291752	6302322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6291997_6294456_6294620_6294716_6294870_6295075_6295179_6295488_6295724_6296333_6296431_6296517_6296680_6296781_6296923_6297668_6297907_6297992_6298141_6298226_6298320_6299801_6299958_6300053_6300298_6300442_6300540_6300625_6300786_6301288_6301432_6301517_6301634_6301735
91524	chr6	+	3827	23	NNC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	2	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	52.8638708663602	225	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTGTTCTGAACAATT	NA	False	NA	NA	False	NA	NA	NA	114620080	114837560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_114620112_114623897_114624019_114648062_114648214_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951_114836292_114836512
91525	chr1	-	2631	2	ISM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	142025	-3	4553	-1	3prime_fragment	FALSE	canonical	3	243	junction_1	0	44	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATCTGGTTGTCTTTGTT	NA	False	NA	NA	False	NA	NA	NA	77349691	77343822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_77346309_77349546
91526	chr13	-	1135	6	Genic_Genomic	ENSMUSG00000114839.2	novel	1153	3	NA	NA	-3585	357319	multi-exon	TRUE	non_canonical	0	0	junction_1	78.2549678934188	93	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGGGGGTCTTGATACA	NA	False	NA	NA	False	NA	NA	NA	66892962	66529115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66529443_66694048_66694149_66882969_66883241_66888839_66889043_66889243_66889330_66892814
91527	chr2	+	1210	2	Genic_Genomic	ENSMUSG00000081434.4	novel	952	1	NA	NA	-78	373	multi-exon	FALSE	non_canonical	0	0	junction_1	0	493	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152195456	152196859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_152196477_152196669
91528	chr5	-	1890	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	28	2	-1	-2	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	140	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8917	False	NA	NA	False	NA	NA	NA	142892481	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
91529	chr12	+	1371	5	FSM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	-25	2517	-25	-2517	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	208	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGAAGCACTGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	55246351	55261436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260624
91530	chr17	-	3227	11	Antisense	novelGene_ENSMUSG00000098269.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGCCTCCCGCCTTCCCG	NA	False	NA	NA	False	NA	NA	NA	35472656	35460749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35460827_35462220_35462426_35463110_35463238_35463429_35463523_35465910_35466096_35467925_35468048_35468549_35470352_35471719_35471829_35471935_35472090_35472185_35472331_35472448
91531	chr11	-	892	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-58	180	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4403	False	NA	NA	False	NA	NA	NA	20286071	20284831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285228_20285575
91532	chr16	-	2600	7	ISM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	-23	4492	-21	-299	5prime_fragment	FALSE	canonical	3	49	junction_6	23.3410701458942	50	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGCCTTTTTAGCATAT	NA	False	NA	NA	False	NA	NA	NA	22676440	22636461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
91533	chr5	-	2214	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	5	-422	5	422	multi-exon	FALSE	canonical	3	122	junction_1	3.5	202	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTCCTAAGACTCTAATC	9714	False	NA	NA	False	NA	NA	NA	115479232	115470875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115472654_115473525_115473630_115478900
91534	chr7	+	1255	7	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3104.3193251053	32	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499653_46501332_46501419_46503406_46503531_46504400
91535	chr13	-	1232	2	Antisense	novelGene_ENSMUSG00000021218.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTACACTGTAGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	3615822	3614416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3614685_3614858
91536	chr16	+	3421	9	NNC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	-17	-915	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1361.98577452189	1	92	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGCTATGCACAGCTCA	NA	False	NA	NA	False	NA	NA	NA	84570993	84621901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613213_84618133_84618191_84619674
91537	chr16	+	1217	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-574	1916	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	116.802777744748	575	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2290	False	NA	NA	False	NA	NA	NA	93811725	93815011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814409
91538	chr1	+	3930	12	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCGTCGCTCTATGGTCTT	NA	False	NA	NA	False	NA	NA	NA	20873229	20886927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882397_20882786_20882918_20883182_20883338_20884621_20884731_20884911_20885151_20886871
91539	chr9	+	3278	26	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	2	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	783.262352982703	76	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAGAGTAGTTCAATGCA	NA	False	NA	NA	False	NA	NA	NA	72569721	72655443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648964_72654559
91540	chr14	+	5226	8	FSM	ENSMUSG00000075592.11	ENSMUST00000168479.3	7511	8	151	2134	132	-1689	multi-exon	FALSE	canonical	3	80	junction_1	7.49965985623239	289	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACATTGAAGGGCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	56091624	56110059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_56091884_56100409_56101069_56101189_56102591_56103415_56103547_56103667_56103765_56105477_56105580_56105870_56105973_56107584
91541	chr4	+	2758	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	15	182328	multi-exon	TRUE	non_canonical	0	0	junction_2	73.3545423875638	6	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216509	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147219028_147219122_147409276_147409335_147413438_147413566_147415724_147416553_147417056_147418064_147600182
91542	chr4	+	5534	27	NNC	ENSMUSG00000028703.15	novel	3065	10	NA	NA	-73	26628	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	101.991791060786	384	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCGTTAAGAGCCTCCAGG	NA	False	NA	NA	False	NA	NA	NA	115932586	115980868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519_115954569_115954654_115954823_115955683_115955862_115956136_115956212_115956530_115956657_115956831_115956945_115957464_115957595_115957734_115957808_115959022_115959152_115962953_115963105_115967164_115967291_115967514_115967824_115968387_115968522_115969675_115969738_115976033_115976155_115980092_115980180_115980258_115980346_115980675
91543	chr8	+	3691	9	NNC	ENSMUSG00000031893.8	novel	1993	14	NA	NA	16928	7317	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	120	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCCTAACTGCTCAAGCA	NA	False	NA	NA	False	NA	NA	NA	106571311	106578629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_106571630_106571706_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106575958_106576058_106576153_106576256_106576558_106578503
91544	chrX	-	3697	11	NNC	ENSMUSG00000031232.18	novel	4531	10	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	70.7856623900632	177	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	105055512	105011689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_105012837_105013670_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
91545	chr17	+	5696	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3356	-491	-3356	491	mono-exon	FALSE	NA	NA	NA	NA	NA	31	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCGCTCCTGTCCCGGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40159583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40153900_40159600
91546	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
91547	chr15	-	1995	4	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1773.71098735579	23	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	709	False	NA	NA	False	NA	NA	NA	36793812	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772490_36776489_36776614_36790927_36791233_36793722
91548	chr8	-	829	3	FSM	ENSMUSG00000031633.5	ENSMUST00000155986.2	1275	3	0	446	0	-446	multi-exon	FALSE	canonical	3	7715	junction_1	86	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGGCCGGAAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	46664067	46661452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46661576_46662058_46662546_46663848
91549	chr7	-	3033	21	NIC	ENSMUSG00000040488.19	novel	4726	29	NA	NA	5393	-154	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	120.611566609509	1	50	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCCACCCCCACCTGGAC	NA	False	NA	NA	False	NA	NA	NA	27027645	27006201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27013661_27013809_27018835_27018962_27019049_27019182_27021446_27021579_27021713_27021837_27022235_27022362_27022566_27022696_27023511_27023632_27024443_27024687_27025102_27025229_27025911_27026038_27026116_27026249_27026685_27026938_27027062_27027213_27027610
91550	chr15	-	2627	18	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	32	343	intron_retention	FALSE	canonical	3	2899	junction_9	218.038709619952	228	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAAGACCTCTGTCCTCA	-21	True	NA	NA	False	NA	NA	NA	11399655	11383747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
91551	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	258	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
91552	chr3	+	1743	11	ISM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	6	0	-2	0	intron_retention	FALSE	canonical	3	414	junction_7	34.2175393621458	506	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGAGAGCCGAATGAGT	NA	False	NA	NA	False	NA	NA	NA	36606760	36619876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366
91553	chr6	+	1997	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	45	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	1916.27573368239	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTTATCTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	122684571	122691590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690540_122690706
91554	chr5	-	5518	6	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	39	118930	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	105.524594289673	433	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCTGGGGTCGCAAGTTT	NA	False	NA	NA	False	NA	NA	NA	105007897	104842104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_104842706_104843160_104844529_104960305_104963302_104964564_104964626_104964862_104964990_105007532
91555	chr9	+	1923	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	593.417694377241	1	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183597	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208073_108208191_108212249_108212381_108213846
91556	chr14	-	9000	45	NIC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	3	69	junction_16	126.962452557849	739	36	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	14651788	14518184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
91558	chr6	-	2444	22	NIC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_9	215.718732215289	2	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATTCTTTGTAAGCGTG	3038	False	NA	NA	False	NA	NA	NA	71885744	71857626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
91559	chr9	-	4182	22	NNC	ENSMUSG00000032180.12	novel	1378	4	NA	NA	-7	82645	intron_retention	FALSE	non_canonical	0	0	junction_1	165.705391113237	1315	60	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCCTCCCGGCCTCCGGGG	NA	False	NA	NA	False	NA	NA	NA	21421490	21336203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21336552_21368797_21368871_21376875_21377027_21378826_21378887_21382636_21382736_21383906_21384068_21385825_21385971_21387768_21387903_21389574_21389642_21391699_21391840_21392626_21392714_21396944_21397016_21401036_21401098_21405796_21405912_21410551_21410662_21411548_21411663_21414834_21415003_21415725_21415961_21416759_21417008_21418714_21419688_21420226_21420648_21421289
91560	chr14	+	3440	15	NNC	ENSMUSG00000021918.11	novel	4245	15	NA	NA	12	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	21.4091578726564	68	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGTGTGTATGGTGTG	NA	False	NA	NA	False	NA	NA	NA	30673484	30710776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681255_30685889_30686032_30692119_30692522_30697179_30697330_30697717_30697785_30699402_30699537_30701949_30702036_30704270_30704474_30706300_30706435_30709068_30709387_30709893
91561	chr13	-	2734	16	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_15	2763.63494936168	297	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTATGACGTGTGCCCAA	4760	False	NA	NA	False	NA	NA	NA	58550321	58539053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877_58549932_58550206
91563	chr17	-	7447	21	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10115	8350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	349.880333114052	263	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGTCAGGCC	2353	False	NA	NA	False	NA	NA	NA	6744536	6697572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699319_6702404_6702530_6702867_6702945_6703293_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
91564	chr6	+	6563	39	FSM	ENSMUSG00000063870.13	ENSMUST00000056889.15	6697	39	134	0	-47	0	multi-exon	FALSE	canonical	3	138	junction_8	108.606041087339	664	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTGGTTCTGTGTGGG	1742	False	NA	NA	False	NA	NA	NA	125073077	125107554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
91565	chr2	-	3619	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	13	-56	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	364.709043472372	423	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTAATTTTGTTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	94268468	94242082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257325_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
91566	chrM	+	646	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	498	0	498	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-7	True	NA	26	True	NA	NA	NA	14642	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14600_15300
91567	chr11	+	7575	4	Intergenic	novelGene_2257	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTAGCAAGATTTTATC	NA	False	NA	NA	False	NA	NA	NA	45615264	45667415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_45615622_45615777_45616633_45660748_45662610_45662913
91568	chr3	+	2179	9	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	65	junction_8	1429.67163515788	3	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACGATCAGACCGGCTTG	NA	False	NA	NA	False	NA	NA	NA	89986967	90008199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834
91569	chr6	-	359	2	ISM	ENSMUSG00000057841.6	ENSMUST00000203816.2	906	3	1181	0	1181	0	3prime_fragment	FALSE	canonical	3	17944	junction_1	0	93	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115784128	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_115782650_115783946
91570	chr17	-	805	3	NNC	ENSMUSG00000036438.15	novel	890	5	NA	NA	-7	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAATTGTTGCTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	87754291	87740845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_87741238_87743031_87743370_87754216
91571	chr8	+	4569	4	Antisense	novelGene_ENSMUSG00000101431.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	33	32	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGGAGCGGAAGGGACT	NA	False	NA	NA	False	NA	NA	NA	76285142	76630932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_76285176_76309791_76312055_76327463_76329461_76630656
91572	chr16	+	7529	3	Intergenic	novelGene_3848	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	102	59	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTTTCCATTTTGG	NA	False	NA	NA	False	NA	NA	NA	75854123	75861760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_75858185_75858244_75858538_75858585
91573	chr3	+	9280	1	Antisense	novelGene_ENSMUSG00000027506.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	65	57	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCAGTGGAGGGTAGAAG	NA	False	NA	NA	False	NA	NA	NA	8991664	9000944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_8991700_9000900
91574	chr16	-	500	1	Intergenic	novelGene_3824	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
91575	chrUn_JH584304v1	-	2832	7	Intergenic	novelGene_4641	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	149	junction_3	244.42818759073	29	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	59700	52668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55702_56985_57152_58563_58836_59591
91576	chr19	-	2028	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	-159	-50	58	20	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	25	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGACTTTCATCCTTC	NA	False	NA	NA	False	NA	NA	NA	8691402	8684930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
91578	chr15	-	4323	2	Intergenic	novelGene_3378	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1451	101	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACCTGAAGCCCTAAGCT	NA	False	NA	NA	False	NA	NA	NA	103139532	103134873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_103136802_103137137
91579	chr6	-	1861	5	ISM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	5205	1	-1314	0	3prime_fragment	FALSE	canonical	3	1259	junction_2	107.007885223473	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTTCAGACCTGAT	NA	False	NA	NA	False	NA	NA	NA	124683936	124681344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703
91580	chr9	-	569	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	-40	-57	-40	57	mono-exon	FALSE	NA	NA	NA	NA	NA	161	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGACTGGGGGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	115870172	115869603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_115869600_115870200
91581	chr11	+	3375	15	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	32572	3642	23	-3639	internal_fragment	FALSE	canonical	3	629	junction_10	53.9480097418064	224	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATTATGTGTTTGGTCCG	NA	False	NA	108	True	NA	NA	NA	57932461	57949218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57932479_57933055_57933185_57933261_57933469_57933569_57933733_57934731_57934877_57938520_57938696_57938802_57938973_57940522_57940916_57941608_57941733_57941827_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57947990_57948086
91582	chr14	+	6633	2	Intergenic	novelGene_561	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	63	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATGAAATTGCCTTAGCT	NA	False	NA	NA	False	NA	NA	NA	49839815	49846580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_49846163_49846294
91583	chr13	-	2600	4	FSM	ENSMUSG00000097483.3	ENSMUST00000180403.3	1519	4	350	-1431	-14	1425	multi-exon	FALSE	canonical	3	52	junction_2	5.09901951359278	422	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGCCTGGGTGCATGCT	NA	False	NA	NA	False	NA	NA	NA	66667601	66649798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_66652035_66652807_66652875_66653161_66653268_66667410
91584	chr17	-	1433	7	NIC	ENSMUSG00000036983.8	novel	1402	7	NA	NA	1	25	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	30.1132123088115	508	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCAAAGGACTGGGGGTA	NA	False	NA	NA	False	NA	NA	NA	3608028	3569505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607821
91585	chr6	-	961	5	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3764.86303701742	35	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	5	True	NA	NA	False	NA	NA	NA	7693209	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675333_7682270_7682457_7685168_7685407_7689251_7689524_7693108
91586	chr15	+	6942	3	Genic_Genomic	ENSMUSG00000115318.2	novel	2906	1	NA	NA	0	4117	multi-exon	TRUE	non_canonical	0	0	junction_1	58.5	180	40	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	33831593	33838616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_33837086_33837130_33837513_33837548
91587	chr5	-	6695	22	NNC	ENSMUSG00000053293.10	novel	5580	13	NA	NA	-10264	6182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	103.019404640224	556	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACTGTCGCAAAACTCGG	1477	False	NA	NA	False	NA	NA	NA	135433664	135398812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135398929_135399042_135399166_135400092_135400268_135400349_135400457_135402803_135402945_135403035_135403153_135403779_135403957_135404126_135404338_135404406_135404553_135404729_135407029_135407488_135407612_135409773_135411391_135411924_135412099_135412480_135412584_135412692_135412818_135412946_135413021_135413706_135413799_135415677_135415850_135417490_135417572_135420475_135420635_135421163_135421380_135433517
91589	chr15	+	2928	11	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	264.328583395742	39	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-34	True	NA	NA	NA	101982358	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995049_102001530_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
91590	chr5	+	3845	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	0	intron_retention	FALSE	non_canonical	0	0	junction_3	685.180997985204	5	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255168_108255230_108256382_108256435
91591	chr17	+	1333	4	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	42	0	intron_retention	FALSE	canonical	0	0	junction_3	1955.35316503183	34	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3078	False	NA	NA	False	NA	NA	NA	35816956	35821669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820369_35820945
91592	chr7	+	4069	2	NNC	ENSMUSG00000006333.15	novel	1185	2	NA	NA	-2	1259	intron_retention	FALSE	non_canonical	0	0	junction_1	0	97	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATCCTTCGGATTAGAG	1307	False	NA	NA	False	NA	NA	NA	3707034	3711155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_3710368_3710419
91593	chrM	+	1154	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	462	-71	462	71	mono-exon	FALSE	NA	NA	NA	NA	NA	73	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	12	True	NA	-97	True	NA	NA	NA	5789	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
91594	chr13	-	2576	21	NIC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	10	8	combination_of_known_splicesites	FALSE	canonical	3	40	junction_6	289.380247252642	2	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTACTTGGTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	6698803	6631209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
91595	chrM	+	1654	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-276	0	-276	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	13	False	NA	NA	False	NA	NA	NA	9890	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
91596	chr7	+	1117	12	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	-4	-285	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	368.768578464611	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTGTCCTAGTGTCAATAA	NA	False	NA	NA	False	NA	NA	NA	120234458	120258462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253214_120258375
91597	chr13	+	7175	11	Fusion	ENSMUSG00000114684.3_ENSMUSG00000114777.2	novel	1329	5	NA	NA	-110172	1394	intron_retention	FALSE	canonical	0	0	junction_3	19.8305320150519	49	55	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66550086	66678802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66550238_66609950_66610037_66610237_66610441_66654710_66654789_66660218_66660361_66661815_66661988_66663166_66663221_66664310_66667637_66674049_66674177_66674374_66674436_66676027
91598	chr2	-	9078	22	FSM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	1	6	1	-6	multi-exon	FALSE	canonical	3	679	junction_17	176.960671803312	694	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATTTTGTTATTTGTC	9822	False	NA	NA	False	NA	NA	NA	120394287	120337306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
91599	chr16	+	5125	2	Fusion	ENSMUSG00000022884.17_ENSMUSG00000088524.3_ENSMUSG00000064880.3	novel	770	4	NA	NA	15	-1	intron_retention	FALSE	canonical	3	1869	junction_1	0	3	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6892	False	NA	NA	False	NA	NA	NA	22927346	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_22930343_22930566
91600	chr9	+	2548	17	Antisense	novelGene_ENSMUSG00000032116.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	68	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTCCTGCTTCTCATAG	NA	False	NA	NA	False	NA	NA	NA	36643728	36676388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_36644257_36645608_36645727_36646648_36646830_36652778_36652882_36653008_36653126_36654710_36654898_36655288_36655445_36657846_36657940_36659218_36659376_36660847_36661030_36662477_36662645_36663626_36663731_36666100_36666201_36670035_36670173_36670508_36670617_36674624_36674690_36676343
91602	chr4	+	5153	16	Fusion	ENSMUSG00000067916.10_ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	1275	6	NA	NA	-8	180	multi-exon	TRUE	non_canonical	0	0	junction_1	19.9555060627944	3	108	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146599368	147265216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146599377_146695462_146695757_146696242_146696495_146697957_146698060_146700005_146700119_146739355_146739414_146740256_146740384_146741834_146741973_146742638_146742707_146802658_146803236_146804243_146804775_146804858_146805189_146817994_146818509_146907047_146908370_147075346_147075779_147264929
91603	chr2	-	4481	6	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-30	3171	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	125.264520116432	8	27	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	176898244	176881978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176894748_176894782_176898132
91604	chr5	-	3946	5	FSM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	-1	9	-1	-7	multi-exon	FALSE	canonical	3	8	junction_4	48.8108594474631	313	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAAGTACTTGAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	21906393	21867907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21905972
91605	chr8	+	4477	4	FSM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	-16	-1541	-16	1541	multi-exon	FALSE	canonical	3	55	junction_3	7.78888096369861	279	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTCCCAATCCTAAAGAA	NA	False	NA	NA	False	NA	NA	NA	72676679	72690014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_72676817_72682045_72682173_72682981_72683043_72685862
91606	chrX	-	3276	4	NNC	ENSMUSG00000039231.19	novel	1166	3	NA	NA	-13	-506	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	46.783187863448	407	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGGATTGTTTTGTT	7342	False	NA	NA	False	NA	NA	NA	7940510	7934153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7936407_7936768_7937490_7938561_7938708_7940354
91607	chr17	-	2837	3	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCCGCTTCCCTCTGGTTC	4091	False	NA	NA	False	NA	NA	NA	29260039	29251707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29251759_29255212_29255421_29257461
91608	chr15	+	2703	13	NIC	ENSMUSG00000056851.15	novel	2571	13	NA	NA	-3	7	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	170.878042929908	16	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAGTGTCTTTCATGGAG	2120	False	NA	NA	False	NA	NA	NA	102379084	102408503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102379239_102381719_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
91609	chr1	-	6945	2	Intergenic	novelGene_345	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	121	34	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGGTTTCCGTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	16905320	16898330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_16898436_16898480
91610	chr19	-	3255	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	22703307	22699838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765
91612	chrX	+	1941	6	FSM	ENSMUSG00000031155.18	ENSMUST00000033495.15	2045	6	5	99	5	-99	multi-exon	FALSE	canonical	3	69	junction_5	7.30479294709987	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGAGAGCGGCAAGTGCC	NA	False	NA	NA	False	NA	NA	NA	7744545	7749572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_7744796_7744922_7745033_7745866_7745918_7747486_7747860_7748311_7748489_7748592
91614	chr4	-	3501	20	ISM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	3089	0	1388	0	3prime_fragment	FALSE	canonical	3	287	junction_9	35.1497784517592	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	2938	False	NA	NA	False	NA	NA	NA	41121366	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210
91615	chr17	-	1164	9	NNC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-4	-11	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_4	254.496930236889	13	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTCAGGCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	46558898	46554856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555821_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
91616	chr19	-	651	3	FSM	ENSMUSG00000084957.4	ENSMUST00000235688.2	613	3	-50	12	-32	-8	multi-exon	FALSE	canonical	0	0	junction_2	103	18	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTGAATATATTGTTGGG	NA	False	NA	NA	False	NA	NA	NA	53932941	53919452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_53919934_53920560_53920637_53932847
91618	chr6	-	1526	10	FSM	ENSMUSG00000029780.15	ENSMUST00000152447.9	1067	10	-16	-443	-16	-108	multi-exon	FALSE	canonical	3	11	junction_9	88.9986821930458	11	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCAGGAAGTTGTGTCTT	1301	False	NA	NA	False	NA	NA	NA	56900820	56859492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56900656
91619	chrX	-	6807	30	Antisense	novelGene_ENSMUSG00000065536.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	37	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCACCTTCATCATCCTC	NA	False	NA	NA	False	NA	NA	NA	150718408	150690291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_150690438_150691723_150691951_150692402_150692582_150692853_150692948_150693097_150693249_150695201_150695249_150697139_150697430_150698587_150698842_150699034_150699165_150699815_150700037_150700114_150700403_150700545_150700648_150701374_150701922_150702569_150703182_150704041_150704156_150704253_150704419_150705331_150705459_150705689_150705891_150706470_150706602_150707656_150707757_150710625_150710784_150711146_150711392_150711755_150711877_150712339_150712481_150713058_150713345_150713457_150713561_150714730_150714850_150715541_150715725_150715933_150716126_150717275
91620	chr17	-	2072	8	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	1	-1490	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	222.034011000154	659	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAAGTGGATGGTGTATA	NA	False	NA	NA	False	NA	NA	NA	56597510	56585965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593529_56593647_56594793_56594877_56597453
91621	chr16	-	2507	3	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	800	3198	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCTTGTAACAAAATTA	NA	False	NA	-28	True	NA	NA	NA	22932694	22929494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22930011_22930249_22930635_22931088
91622	chrX	-	4914	1	NIC	ENSMUSG00000031167.17	novel	2792	7	NA	NA	54	72	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	264	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGAGATTAAAGGTAGAG	6633	False	NA	NA	False	NA	NA	NA	8011864	8006950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8007000_8011900
91623	chr2	+	5798	16	ISM	ENSMUSG00000027678.18	ENSMUST00000088095.6	7531	23	59006	763	3725	-763	3prime_fragment	FALSE	canonical	3	140	junction_12	44.929574521318	3	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGCTTTTATGATGTG	8728	False	NA	NA	False	NA	NA	NA	165893562	165914399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910248_165910469_165911124_165911300_165911730_165911873_165912051
91624	chr5	+	1502	12	NIC	ENSMUSG00000029017.14	novel	1615	13	NA	NA	22	2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	110.125923416171	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCGTTAGTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	21942160	21962146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_21942275_21943866_21944008_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
91625	chrM	+	1489	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	83	10	83	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGGTTATTAGGGTGG	17	False	NA	12	True	NA	NA	NA	1176	2665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1200_2700
91626	chr17	-	9770	2	NNC	ENSMUSG00000024018.19	novel	1246	2	NA	NA	12381	-664	intron_retention	FALSE	non_canonical	0	0	junction_1	0	24	90	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGGAACTCGGGAGACA	NA	False	NA	NA	False	NA	NA	NA	29923556	29913097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29919253_29919941
91627	chr17	-	1962	9	NIC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	-11	-4	combination_of_known_junctions	FALSE	canonical	3	6	junction_8	57.9427249531811	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTGACTGATTCTACCA	NA	False	NA	NA	False	NA	NA	NA	26309205	26300207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26309070
91628	chr14	+	367	1	FSM	ENSMUSG00000060143.8	ENSMUST00000227553.2	383	1	16	0	16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105919278	105919645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_105919300_105919600
91630	chr15	-	1136	3	FSM	ENSMUSG00000036606.18	ENSMUST00000151418.2	732	3	19	-423	19	-9	multi-exon	FALSE	canonical	3	409	junction_1	9.5	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTCTCTGGTTGACTGG	NA	False	NA	NA	False	NA	NA	NA	89041428	89039760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_89040589_89040700_89040776_89041195
91632	chr4	-	533	2	Intergenic	novelGene_1970	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	9	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATAAATCTTGTTT	9660	False	NA	NA	False	NA	NA	NA	132242179	132240300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_132240485_132241830
91633	chr10	+	824	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	57	4	-3	-4	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	25	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTCAGCAGGTGCTAGA	4969	False	NA	NA	False	NA	NA	NA	127871500	127884498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
91635	chr4	-	1202	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-48	-152	-48	152	mono-exon	FALSE	NA	NA	NA	NA	NA	90	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACCATCAATAAAGTTCG	NA	False	NA	NA	False	NA	NA	NA	91740954	91739752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739800_91741000
91636	chr4	+	2833	16	Antisense	novelGene_ENSMUSG00000104566.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	12	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGCCGCCGCTGCTCCCG	1621	False	NA	NA	False	NA	NA	NA	133413792	133479805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133413865_133413943_133414102_133414514_133414687_133414847_133414984_133416367_133416571_133418378_133418598_133420114_133420222_133420317_133420457_133421061_133421381_133421972_133422146_133422884_133422968_133423221_133423467_133446846_133446964_133447859_133448313_133450151_133450363_133479779
91637	chr4	+	3816	6	NIC	ENSMUSG00000063524.14	novel	773	7	NA	NA	0	-340	intron_retention	FALSE	canonical	3	12691	junction_5	1267.23042892759	10	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCTCATCTCTCCAGCAC	NA	False	NA	NA	False	NA	NA	NA	150321696	150331009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150328532_150328697_150328832_150329571
91639	chr17	+	4191	11	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	-15	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	805.485046416133	3	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCATTTTTCCATTTTC	NA	False	NA	NA	False	NA	NA	NA	88282507	88298316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88292106_88292143_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
91641	chrX	+	15612	9	Antisense	novelGene_ENSMUSG00002076267.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	398	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTTTCTCGTTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	29454531	30144490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_29458322_29803938_29808968_29821559_29821664_29999328_29999504_29999611_29999825_30000131_30002221_30002437_30002648_30140398_30144085_30144174
91642	chr7	+	1759	13	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	6	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	359.199766456247	18	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACATCCTCTCAGCTGG	NA	False	NA	NA	False	NA	NA	NA	120234468	120258746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253296_120256739_120256894_120258243
91644	chr5	+	4395	13	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	214	0	intron_retention	FALSE	non_canonical	0	0	junction_10	77.3110600108419	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAATGTTAGTAGTTTG	9642	False	NA	NA	False	NA	NA	NA	110988308	111021999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014615_111014662_111015960_111019892_111019974_111021345
91645	chr16	+	564	1	Intergenic	novelGene_3741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2162	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
91646	chr3	-	6537	11	NNC	ENSMUSG00000055436.19	novel	2952	10	NA	NA	-3506	-5	intron_retention	FALSE	canonical	3	27	junction_7	243.521354299782	570	54	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAGTCATGCTTCTGTAG	NA	False	NA	NA	False	NA	NA	NA	157732812	157716560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724723_157724836_157724948_157725077_157727012_157727063_157727596_157727690_157728477
91647	chr17	-	5205	16	ISM	ENSMUSG00000024002.19	ENSMUST00000121285.8	5922	20	59929	11	-23172	-11	3prime_fragment	FALSE	canonical	3	175	junction_5	38.9195180968224	380	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTTTAATGCTGCTGT	NA	False	NA	NA	False	NA	NA	NA	32443154	32415258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_32416795_32417004_32417249_32417330_32417537_32417656_32417788_32417869_32418245_32419975_32420567_32421147_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060
91648	chrX	+	2417	3	NIC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	-798	-27	intron_retention	FALSE	canonical	3	11014	junction_2	796	44	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAGAAATAAAAATACCC	NA	False	NA	NA	False	NA	NA	NA	36058505	36062433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_36059495_36060495_36061530_36062039
91649	chr8	+	7766	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-111	-220	multi-exon	FALSE	non_canonical	0	0	junction_4	282.873204810919	117	43	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGTAAAATAAAAGTAGAT	NA	False	NA	NA	False	NA	NA	NA	20697873	20727046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20719590_20722148_20722558
91650	chr4	+	3402	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	552	6	NA	NA	7	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	44.5975055356239	587	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147447267_147447362_147536170_147536264_147637752_147637884_147639766_147639861_147646898_147646979_147661481_147661587_147665698_147665826_147667290
91651	chr2	-	2938	22	Intergenic	novelGene_2749	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	32	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGCAGTCCTTTGGCA	NA	False	NA	NA	False	NA	NA	NA	156382074	156262361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_156262503_156263021_156263219_156280503_156280555_156335822_156336013_156336874_156337040_156337777_156337883_156338403_156338449_156341506_156341581_156345562_156345781_156347682_156347772_156348268_156348422_156350730_156350830_156351050_156351226_156352647_156352796_156355942_156356129_156368806_156368908_156371303_156371390_156375699_156375787_156376604_156376690_156378899_156378978_156379283_156379401_156381726
91652	chr9	+	517	2	Genic_Genomic	ENSMUSG00000062933.8	novel	490	1	NA	NA	-44	208	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	96777666	96778408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_96777944_96778168
91653	chr6	-	3517	2	FSM	ENSMUSG00000057666.19	ENSMUST00000144588.2	769	2	-4	-2744	-4	0	multi-exon	FALSE	canonical	3	8124	junction_1	0	139	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	NA	False	NA	NA	NA	125142572	125138815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125142275_125142514
91654	chr5	-	3698	5	NNC	ENSMUSG00000044968.17	novel	3954	5	NA	NA	0	-70	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	51.0710289694657	285	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTACTCTTGTTAGTCTAA	NA	False	NA	NA	False	NA	NA	NA	21906392	21867970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21906156
91655	chr4	-	476	1	FSM	ENSMUSG00000068240.6	ENSMUST00000089430.6	504	1	3	25	3	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	26	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9	False	NA	NA	False	NA	NA	NA	3973592	3973116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3973100_3973600
91656	chr11	+	1903	2	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	54912	1616	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATAATGATTTGAGAATT	NA	False	NA	NA	False	NA	NA	NA	62404345	62406859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62405717_62406327
91657	chr2	-	2407	6	ISM	ENSMUSG00000085682.3	ENSMUST00000228378.2	1691	8	93	30	93	-30	intron_retention	FALSE	canonical	2	4	junction_1	12.0099958368019	2	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATTCAAATGTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	166349898	166341990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706
91658	chr4	+	4328	18	NNC	ENSMUSG00000039953.14	novel	822	4	NA	NA	13137	0	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_1	133.140142623683	484	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGTGGGGTCCATTCT	NA	False	NA	NA	False	NA	NA	NA	149684841	149733356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_149685016_149698506_149698630_149711668_149711865_149713759_149713969_149716184_149716335_149716445_149716632_149719127_149719377_149719690_149719813_149722689_149722853_149726114_149726172_149727651_149727810_149728037_149728187_149728428_149728656_149729326_149729498_149729778_149729925_149730697_149730834_149731222_149731408_149731829
91659	chr15	+	1796	7	FSM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	253	-436	253	-53	multi-exon	FALSE	canonical	3	4	junction_1	29.9467119322899	109	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGCACATCTCACAGT	NA	False	NA	NA	False	NA	NA	NA	44483239	44504858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_44483339_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
91660	chr17	-	3652	4	Antisense	novelGene_ENSMUSG00000023902.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCACCTGTGGAGCTAAAG	NA	False	NA	NA	False	NA	NA	NA	23829899	23824492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_23826363_23826553_23826618_23827080_23827139_23828239
91661	chr2	-	2971	19	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	174.146241935469	61	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017561	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4995877_4997716_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
91662	chr12	-	701	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	24	229	24	0	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685928	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
91663	chr14	+	1027	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-99	700	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATATTTTACAGTGT	NA	False	NA	NA	False	NA	NA	NA	13669338	13670473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669564_13669671
91664	chr16	+	2717	9	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	-4	intron_retention	FALSE	canonical	3	380	junction_8	619.232677896605	40	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6054	False	NA	NA	False	NA	NA	NA	22926508	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
91665	chrM	-	3354	1	FSM	ENSMUSG00000064343.1	ENSMUST00000082394.1	71	1	-549	-2734	-549	2734	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTACACTATGATTATTC	28	True	NA	NA	False	NA	NA	NA	4391	1037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_1000_4400
91667	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
91668	chr17	+	4638	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112676.4	4358	3	110	-390	110	390	multi-exon	FALSE	canonical	3	41	junction_1	80	12	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTCAGGTAAAAATGTGG	NA	False	NA	NA	False	NA	NA	NA	69690944	69698584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_69691221_69692415_69692500_69694306
91669	chr13	+	2711	3	Intergenic	novelGene_1452	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	91	junction_1	59	7	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGTGTTAAAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	66773972	66785367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66774068_66782550_66782678_66782878
91670	chr6	+	6009	15	NNC	ENSMUSG00000030096.9	novel	738	6	NA	NA	0	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	128.264713521272	24	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGAACGTCTGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	91678637	91736039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91678807_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894_91732676_91732713
91671	chr2	-	5503	4	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	3176	1735	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	500.198182945742	42	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTGTCTGTCCATC	5524	False	NA	NA	False	NA	NA	NA	177266816	177259261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177262087_177263226_177263288_177263479_177266014_177266733
91672	chr13	+	5101	17	NNC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	-26	-8	intron_retention	FALSE	canonical	0	0	junction_8	57.4469524322222	4	147	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCATACCGTCTACTG	NA	False	NA	NA	False	NA	NA	NA	35059460	35090039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077839_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35087257_35088026_35088073_35089865
91673	chr13	-	14839	11	Genic_Genomic	ENSMUSG00000113712.2	novel	1289	1	NA	NA	-50494	83797	multi-exon	FALSE	non_canonical	0	0	junction_1	5.10783711564885	3	235	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTCACAAAATAAATCGGC	NA	False	NA	NA	False	NA	NA	NA	65960821	65825241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_65832819_65883515_65883716_65904283_65907609_65907773_65910025_65910281_65911015_65911098_65911339_65912507_65912569_65912752_65912882_65915533_65915643_65916235_65916393_65960764
91674	chr13	-	2958	7	Fusion	ENSMUSG00000091347.3_ENSMUSG00000118666.1_ENSMUSG00000114027.2	novel	2349	5	NA	NA	-7316	1485	multi-exon	FALSE	canonical	0	0	junction_3	39.5842982338536	18	21	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	1878	False	NA	NA	False	NA	NA	NA	66439281	66373647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66375998_66384209_66384271_66384471_66384599_66399135_66399260_66431569_66431631_66431830_66431958_66439173
91675	chr2	-	4337	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-5	2795	at_least_one_novel_splicesite	FALSE	canonical	1	57	junction_2	287.264106123036	2	57	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTGCTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	177482116	177470788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177474890_177476043_177476105_177476351_177476440_177482029
91676	chr18	-	10322	55	Fusion	ENSMUSG00000024370.18_ENSMUSG00000003778.15	novel	4468	22	NA	NA	0	3	intron_retention	FALSE	non_canonical	0	0	junction_1	433.421903341647	658	28	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTAGTATGACCCTTT	NA	False	NA	NA	False	NA	NA	NA	34784775	34731664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_-_34732630_34732844_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780062_34784459_34784516_34784599
91677	chr18	-	3643	14	NIC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	-7	intron_retention	FALSE	canonical	3	2259	junction_13	808.944150762742	8	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTTTTAATTATGGTC	NA	False	NA	NA	False	NA	NA	NA	64649570	64633295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634506_64634814_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
91678	chr2	-	3938	9	NIC	ENSMUSG00000027201.17	novel	1631	15	NA	NA	7078	-1	intron_retention	FALSE	canonical	3	388	junction_4	119.226085128213	4	85	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACAGCTTACTTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	124951715	124929662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124942341_124950875_124950940_124951073_124951124_124951589
91679	chr15	+	1265	9	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	4405.62342353497	25	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTCTTGAATGGAATGAC	NA	False	NA	NA	False	NA	NA	NA	103148880	103153373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152191_103153058
91682	chr11	+	5126	8	NNC	ENSMUSG00000040599.14	novel	3003	3	NA	NA	-9679	-485	intron_retention	TRUE	non_canonical	0	0	junction_1	43.0907916674852	1	172	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGATGGCACTTGTTAGAT	NA	False	NA	NA	False	NA	NA	NA	70900757	70917712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_70901252_70903934_70904024_70904265_70904469_70905377_70905466_70906547_70906627_70909137_70911372_70915375_70915538_70915935
91683	chr6	+	1567	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	355	13552	-4	118	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	42	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGTAGCAGGGATGTTT	5840	False	NA	NA	False	NA	NA	NA	67243962	67261168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
91685	chr2	+	3961	14	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-35333	392	intron_retention	FALSE	non_canonical	0	0	junction_1	354.885547013808	1	54	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTATGACACTCTATGTC	NA	False	NA	NA	False	NA	NA	NA	5814496	5873939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5814834_5815610_5815654_5826084_5826193_5827911_5828017_5838450_5838524_5846762_5846836_5849645_5850012_5859626_5859730_5860790_5860859_5865837_5867220_5868389_5868486_5869157_5869271_5871164_5871219_5872899
91686	chr12	+	2313	10	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	-2	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	206.409756683934	20	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAAAAAGTGTGAAGTAC	2865	False	NA	NA	False	NA	NA	NA	109612563	109628141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109624486_109624556_109626156_109626242_109627179
91687	chr4	-	4427	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	18	354	intron_retention	FALSE	canonical	3	30	junction_10	46.9541265492182	206	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTTTTTT	11	True	NA	NA	False	NA	NA	NA	43025801	43017280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025285
91688	chr6	+	4691	16	NNC	ENSMUSG00000030096.9	novel	738	6	NA	NA	5733	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	163.418671583826	8	59	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACGTCTGGTGTGTTTCGG	186	False	NA	NA	False	NA	NA	NA	91684370	91736044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91684391_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718028_91718152_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894_91732601_91732643_91732938_91734106
91689	chr10	+	2895	15	ISM	ENSMUSG00000036875.16	ENSMUST00000131422.8	4122	21	8343	3660	8259	-3242	internal_fragment	FALSE	canonical	3	200	junction_4	27.2566224867968	5	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCTGGGATTGCAGATGT	NA	False	NA	NA	False	NA	NA	NA	62791147	62806304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554
91690	chrM	+	1143	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	-2	True	NA	87	True	NA	NA	NA	14144	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
91691	chr12	+	2630	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	-273	10	-273	-10	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	1365	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGAAGATATCAGTGTG	4647	False	NA	NA	False	NA	NA	NA	110451898	110538112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
91692	chr17	+	2057	1	Intergenic	novelGene_192	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTGTGGTTTGGAGGGC	NA	False	NA	NA	False	NA	NA	NA	40153887	40155944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
91693	chr16	+	3240	9	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	-2	0	intron_retention	FALSE	canonical	3	441	junction_1	546.138361017609	1	77	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6060	False	NA	NA	False	NA	NA	NA	22926514	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
91694	chr15	-	6936	3	Antisense	novelGene_ENSMUSG00000115318.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	40	33	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCAAGCATCTTCATCTC	NA	False	NA	NA	False	NA	NA	NA	33838611	33831593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_33837088_33837132_33837517_33837553
91695	chr4	-	8134	12	NNC	ENSMUSG00000038172.15	novel	8831	20	NA	NA	-14505	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	82.029323521259	162	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATTACAGTCTTCTATT	NA	False	NA	NA	False	NA	NA	NA	83165912	83138541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164264_83164454_83165849
91696	chr7	-	4934	14	NNC	ENSMUSG00000025484.10	novel	769	7	NA	NA	-5456	-15	intron_retention	FALSE	non_canonical	0	0	junction_5	38.6492343211281	92	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGAAGTTCCGTGCCCG	NA	False	NA	NA	False	NA	NA	NA	140442946	140433321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_140434537_140434677_140434735_140434986_140435079_140435718_140435844_140436133_140437466_140437755_140437804_140437892_140438484_140438773_140438867_140439350_140439500_140440786_140440884_140440983_140441130_140441207_140441352_140441750_140441870_140442220
91697	chr5	-	1187	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	74	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.835320399634	44	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATCAAAATGAGAAACGTA	9706	False	NA	NA	False	NA	NA	NA	137599232	137594915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
91699	chr5	-	3640	6	NNC	ENSMUSG00000028933.12	novel	1740	2	NA	NA	15	110491	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	32.3579974658507	72	72	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTTTGTTGCGTCTTT	NA	False	NA	NA	False	NA	NA	NA	25910808	25784318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_25785874_25786548_25787722_25872372_25872985_25875833_25875919_25903248_25903331_25910675
91700	chr5	+	2146	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5562.02402208245	4	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTTCTGAGTCATCTC	487	False	NA	NA	False	NA	NA	NA	129097277	129101383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129098011_129098056_129099066_129099255_129099438_129099610_129099837
91701	chr15	-	5374	19	FSM	ENSMUSG00000036698.12	ENSMUST00000044113.12	13800	19	128	8298	128	3191	multi-exon	TRUE	canonical	3	61	junction_13	10.6510302057803	69	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTGCTAGCTGTGTTCC	4572	False	NA	NA	False	NA	NA	NA	73056656	72975990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_72978866_72979013_72979214_72980220_72980323_72983535_72983671_72985556_72985752_72988151_72988243_72991185_72991346_72992912_72993098_72995171_72995306_72995725_72995849_72995978_72996099_72997012_72997161_72998295_72998384_72998802_72998938_73000172_73000310_73002709_73002892_73009841_73009963_73018218_73018415_73056609
91702	chr19	+	4063	28	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	13	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	666.707562531654	189	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	679	False	NA	NA	False	NA	NA	NA	10582999	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442_10606514_10606603
91703	chr11	-	3441	3	NNC	ENSMUSG00000035455.13	novel	2807	3	NA	NA	2121	-92	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	10	2	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCATTTTGACGGAGTTGCT	NA	False	NA	NA	False	NA	NA	NA	11756804	11750379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_11752762_11752850_11753064_11755958
91704	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	117	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
91706	chr16	-	2600	7	ISM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	129	4498	0	-299	5prime_fragment	FALSE	canonical	3	51	junction_6	22.6697301851316	85	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGCCTTTTTAGCATAT	NA	False	NA	NA	False	NA	NA	NA	22676290	22636461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
91707	chr4	+	1295	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	49	15	15	-15	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	5123	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGAAAGATGCTATGGTG	NA	False	NA	NA	False	NA	NA	NA	108691846	108719309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
91710	chrX	-	4264	5	NIC	ENSMUSG00000031167.17	novel	1183	7	NA	NA	464	-650	intron_retention	FALSE	canonical	3	764	junction_1	206.822387569625	73	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTGGATTATTTTTTT	7043	False	NA	NA	False	NA	NA	NA	8011454	8005866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193
91711	chr10	-	3541	19	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	379	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.56405583785	67	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175942	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105174_62105282_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
91712	chrM	-	630	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	37	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTACTGAGAAGCCCCCT	900	False	NA	60	True	NA	NA	NA	15288	14658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14700_15300
91713	chr3	+	1696	8	NNC	ENSMUSG00000078578.10	novel	3833	8	NA	NA	18	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	944.837660173234	2	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTAGCTGCCTGGATTA	NA	False	NA	NA	False	NA	NA	NA	135144258	135171821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144579_135145423_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
91715	chr11	-	3980	23	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-17	963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	306.291807738312	1	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATTTGGAAACTGCTTGG	NA	False	NA	NA	False	NA	NA	NA	97078724	97052372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053392_97053464_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072643_97075768_97075936_97078214_97078274_97078371
91716	chr13	+	1342	4	Antisense	novelGene_ENSMUSG00000114343.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	27	junction_3	19.8662192343351	84	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCACTGTACTCAACACAT	NA	False	NA	NA	False	NA	NA	NA	66550097	66612761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66550238_66609950_66610037_66610237_66610441_66611848
91717	chr14	-	2720	18	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-9	-2	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	102.855729242771	41	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTCTTCGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47655673	47625237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_47625577_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
91719	chrX	+	589	1	Antisense	novelGene_ENSMUSG00000095597.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATTGGGCTTCCCGATCT	NA	False	NA	NA	False	NA	NA	NA	151692488	151693077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_151692500_151693100
91720	chrX	-	4856	2	Intergenic	novelGene_3886	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	108	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACGTATGAATTTCAAGAAG	NA	False	NA	NA	False	NA	NA	NA	18410301	18371668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_18375196_18408972
91722	chr13	-	3653	4	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7475	1903	at_least_one_novel_splicesite	FALSE	canonical	3	150	junction_1	38.262252939418	257	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGCCTTGGTCACAGTT	NA	False	NA	NA	False	NA	NA	NA	66828868	66816088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66819455_66821007_66821069_66821267_66821395_66828769
91723	chrX	+	3381	1	Intergenic	novelGene_3985	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	95438018	95441399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_95438000_95441400
91724	chr17	-	2569	12	Fusion	ENSMUSG00000116560.2_ENSMUSG00000116868.2	novel	985	8	NA	NA	5918	-10753	multi-exon	FALSE	non_canonical	0	0	junction_8	16.710465864885	4	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACTCATGGAGTCAGGAAT	NA	False	NA	NA	False	NA	NA	NA	6844184	6789942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_6791227_6792929_6793075_6795963_6796109_6803306_6803476_6809624_6809760_6812795_6812921_6815627_6815707_6817281_6817358_6819117_6819159_6831826_6831892_6841677_6841897_6844098
91725	chr13	-	3122	6	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113623.2	novel	2310	4	NA	NA	-2	614	multi-exon	FALSE	canonical	2	10	junction_3	56.1070405564221	121	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGCTGATATGCATCCT	NA	False	NA	NA	False	NA	NA	NA	62564859	62515527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62555228_62555290_62555482_62555610_62564751
91726	chr17	+	4645	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	-63	-839	-63	390	multi-exon	FALSE	canonical	3	85	junction_1	58	13428	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTCAGGTAAAAATGTGG	NA	False	NA	NA	False	NA	NA	NA	69689981	69698584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_69690265_69692415_69692500_69694306
91727	chr7	-	4555	4	NNC	ENSMUSG00000090744.8	novel	1430	4	NA	NA	0	3078	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	109.191981797607	5	132	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTATATAATATAATGTC	NA	False	NA	NA	False	NA	NA	NA	41210253	41192019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_41196224_41197139_41197201_41197407_41197582_41210137
91728	chr16	-	564	1	Intergenic	novelGene_3742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
91729	chr17	-	2552	20	NIC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-1	-2	combination_of_known_junctions	FALSE	canonical	3	24	junction_17	100.54791721617	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGAGACAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	24746843	24727825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24737715_24737774_24738104_24738221_24746739
91730	chr6	-	4806	6	NNC	ENSMUSG00000040649.16	novel	4725	6	NA	NA	-1608	366	intron_retention	FALSE	canonical	1	1	junction_5	66.3186248349587	179	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAACAAAAAATACTCA	7632	False	NA	NA	False	NA	NA	NA	122465072	122429693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122464942
91731	chr18	-	1763	12	Antisense	novelGene_ENSMUSG00000025428.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	54	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGCCGAGCGCAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	77870212	77861692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77861825_77863499_77863553_77865215_77865387_77866159_77866288_77866445_77866598_77866777_77866931_77867527_77867677_77867776_77868016_77868700_77868767_77868899_77869057_77869498_77869648_77869998
91732	chr5	-	3906	26	NNC	ENSMUSG00000035325.17	novel	4047	26	NA	NA	3	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	232.952541089382	56	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCTTCCCTACTTTCT	8170	False	NA	NA	False	NA	NA	NA	100564031	100509564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521501_100521547_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
91733	chr8	-	5267	11	NNC	ENSMUSG00000031523.17	novel	6159	14	NA	NA	-7461	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.31624915451672	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATTGAATTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	37051884	37034898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_37036174_37036231_37037558_37038418_37038593_37039821_37040040_37041108_37041328_37041960_37042076_37044188_37044403_37046377_37046577_37046700_37046861_37049854_37050032_37050694
91734	chr8	+	3321	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2097	combination_of_known_junctions	FALSE	canonical	2	881	junction_1	574.494062197339	57	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGGTGATGTCATGCGC	NA	False	NA	NA	False	NA	NA	NA	111760510	111782199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
91735	chr4	+	7339	3	Intergenic	novelGene_2043	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	96	junction_2	262.5	392	71	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTTAAAAAGTAAAAATGA	2304	False	NA	NA	False	NA	NA	NA	146289362	146302758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146295675
91736	chr4	-	4114	17	Antisense	novelGene_ENSMUSG00000039953.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	413	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTAGGTGGGCTCGAG	8866	False	NA	NA	False	NA	NA	NA	149733356	149698546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_149698627_149711665_149711865_149713759_149713968_149716183_149716333_149716443_149716631_149719126_149719374_149719687_149719813_149722689_149722851_149726112_149726170_149727649_149727807_149728034_149728185_149728426_149728653_149729323_149729496_149729776_149729923_149730695_149730830_149731218_149731406_149731827
91737	chr2	-	1109	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-73	208	multi-exon	FALSE	canonical	0	0	junction_1	0	52	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCTTAGCTGGGCATG	NA	False	NA	NA	False	NA	NA	NA	28824694	28823413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28824185_28824356
91738	chr14	+	1476	5	NNC	ENSMUSG00000021877.13	novel	1367	5	NA	NA	59	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	935.265035965742	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATGATTTTAAAAAAC	1745	False	NA	NA	False	NA	NA	NA	26359287	26377977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26359642_26368113_26368179_26374260_26374304_26375030_26375118_26377050
91739	chr4	+	2018	6	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	741	2626	intron_retention	FALSE	non_canonical	0	0	junction_1	0	219	29	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCCCGCGGTCGACC	NA	False	NA	26	True	NA	NA	NA	155973320	155976186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155973624_155973888_155975123_155975227_155975362_155975509_155975699_155975813_155975873_155976087
91740	chr5	-	3325	12	NNC	ENSMUSG00000004530.13	novel	3491	11	NA	NA	4	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	283.191988727328	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCGTGTGCTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	114046702	113980500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_113982413_113982457_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
91741	chr9	+	666	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6544.36268554853	32	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATGTGTGGACTCTAAG	NA	False	NA	NA	False	NA	NA	NA	120400580	120403501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_120400590_120401196_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
91742	chr1	-	913	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	244	6	-16	5	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	50	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174642	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
91743	chr12	-	896	5	NNC	ENSMUSG00000090026.2	novel	762	2	NA	NA	-2367	16690	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	418	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCTGTGATCCGTAGGGC	NA	False	NA	NA	False	NA	NA	NA	111700632	111679837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111679847_111689043_111689242_111690771_111690836_111696453_111696546_111700099
91744	chr7	+	1789	9	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4034.97670377414	2	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGGCTCTGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	46495287	46505046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46495687_46495915_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500487_46501300_46501419_46503406_46503531_46504400
91745	chr2	+	11779	8	Antisense	novelGene_ENSMUSG00000085699.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	352	158	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATAAAATTTGCACACG	NA	False	NA	NA	False	NA	NA	NA	174803636	175167843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_174808628_174887311_174888481_174941141_174943761_175085301_175085327_175105060_175106292_175145868_175146059_175166208_175167744_175167824
91746	chr2	-	2666	15	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	61	4595	-15	3702	5prime_fragment	FALSE	canonical	3	560	junction_14	59.9828631990089	17	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCCACCTTGGTCTATG	NA	False	NA	NA	False	NA	NA	NA	5017541	5000129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
91747	chr11	+	3951	6	NNC	ENSMUSG00000036819.15	novel	4351	6	NA	NA	83	-275	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	19.0326036053925	98	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACACAATAAATGGAAATAA	9640	False	NA	NA	False	NA	NA	NA	59341029	59349024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_59341339_59341500_59341667_59344336_59344506_59344617_59344886_59345758_59345906_59346132
91748	chr11	+	1046	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	41	-336	8	336	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	8535	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	97917790	97921654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
91749	chr5	-	5284	12	NNC	ENSMUSG00000053293.10	novel	5580	13	NA	NA	12078	6182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	84.853885109533	1	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACTGTCGCAAAACTCGG	NA	False	NA	NA	False	NA	NA	NA	135411322	135398812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135398929_135399042_135399166_135400092_135400268_135400349_135400457_135402803_135402945_135403035_135403153_135403779_135403957_135404126_135404338_135404406_135404553_135404729_135407029_135407488_135407612_135409773
91750	chr12	-	2477	10	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	2	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	4361.55819364401	12	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATAAAAAGAAGTGTGGA	NA	False	NA	NA	False	NA	NA	NA	110662721	110657474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661611_110661853_110661952_110662115_110662685
91751	chr4	+	2983	6	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	29	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	78.9496041788684	2	53	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033943	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146036265_146036397_146043550_146043631_146054375_146054480_146058453_146058581_146060726
91752	chr4	+	1292	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	-3808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.6274169979695	13	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTAGTTCATCCGTTA	NA	False	NA	NA	False	NA	NA	NA	147576867	147594069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577068_147578781_147578927_147592042_147592098_147593177
91753	chr11	+	3241	9	ISM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	-24	16866	-24	-16866	5prime_fragment	FALSE	canonical	3	225	junction_8	54.5239339648195	24	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTCATCAGTACCATTC	NA	False	NA	NA	False	NA	NA	NA	4587722	4616519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228
91754	chr17	-	1471	10	NNC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	107	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.4545047902389	175	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	NA	False	NA	NA	NA	26309087	26300203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26300617_26301126_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
91755	chr9	+	5686	34	ISM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	-463	1	7	0	intron_retention	FALSE	canonical	3	212	junction_3	21.7396735668967	269	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCTAGCATTTATTATA	NA	False	NA	NA	False	NA	NA	NA	26941481	27006607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856
91756	chr2	-	1181	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-73	192	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAATGTG	NA	False	NA	NA	False	NA	NA	NA	28824694	28823429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28823920_28824003
91757	chr15	+	3806	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	46	2	-45	-2	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	130	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTAATGTTGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	101982253	102005606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
91758	chr6	-	2969	1	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTCATAGTTTAATTTAC	7919	False	NA	NA	False	NA	NA	NA	67259492	67256523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67256500_67259500
91759	chrX	+	4381	2	Intergenic	novelGene_3946	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACCGTTTTCTCGTTGGTG	NA	False	NA	NA	False	NA	NA	NA	63977043	63982203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63979499_63980277
91760	chr1	-	4277	11	NNC	ENSMUSG00000026202.14	novel	2840	4	NA	NA	-10	3371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.653118693437	1502	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACCGGAAGCCCGGATG	NA	False	NA	NA	False	NA	NA	NA	75195897	75187500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75187694_75187880_75188057_75188566_75188787_75189241_75189375_75189526_75189648_75189773_75189872_75190218_75190340_75190455_75193238_75193470_75193620_75193855_75194079_75195836
91761	chr16	+	3974	18	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-36966	-15	multi-exon	TRUE	non_canonical	0	0	junction_1	0	73	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCCGCTCCCGGCAGG	NA	False	NA	NA	False	NA	NA	NA	16130100	16176860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16131907_16132123_16132290_16134199_16134308_16134465_16134641_16136306_16136344_16137317_16137372_16139446_16139538_16141190_16141290_16141489_16141641_16141837_16141960_16147666_16147869_16149859_16149997_16151692_16151817_16154717_16154876_16156452_16156543_16158858_16158932_16163861_16164010_16176627
91763	chr16	-	337	1	Intergenic	novelGene_3816	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57211876	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57211900
91764	chr4	+	1227	4	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	4	-3800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	49.7482551341139	38	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATCCGTTATTTCTGCA	NA	False	NA	NA	False	NA	NA	NA	147576877	147594077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147593177
91765	chr17	-	5803	6	NIC	ENSMUSG00000015120.16	novel	1138	7	NA	NA	24	1406	intron_retention	FALSE	canonical	3	247	junction_5	1877.06990812809	75	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	4564	False	NA	NA	False	NA	NA	NA	25492540	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25487588_25488165_25488250_25488376_25488454_25492455
91766	chrM	+	561	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	395	1	395	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATATGTCTGATAAAAGA	28	False	NA	-73	True	NA	NA	NA	3145	3706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3100_3700
91767	chr11	-	1167	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-68	189	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGCCTT	4393	False	NA	NA	False	NA	NA	NA	20286081	20284822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285779_20285870
91768	chr3	+	1715	11	ISM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	37	-3	5	3	intron_retention	FALSE	canonical	3	414	junction_7	34.2175393621458	41	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGAGCCGAATGAGTTCT	NA	False	NA	NA	False	NA	NA	NA	36606791	36619879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366
91769	chr17	-	6856	9	NNC	ENSMUSG00000062078.16	novel	8547	8	NA	NA	-8	-1301	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	389.592655859938	636	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACAAGTGCATGTGCTGC	NA	False	NA	NA	False	NA	NA	NA	10538298	10422830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_10428561_10432287_10432363_10435088_10435389_10436644_10436733_10457821_10457966_10492875_10492993_10501767_10501911_10537660_10537853_10538231
91770	chr6	-	2549	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	37	junction_21	200.491199493594	33	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3045	False	NA	NA	False	NA	NA	NA	71885737	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884777_71884831_71885617
91771	chrM	+	469	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	218	-3	218	3	mono-exon	FALSE	NA	NA	NA	NA	NA	165	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	192	False	NA	NA	False	NA	NA	NA	7230	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7200_7700
91772	chr17	-	2842	22	NNC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	133.17907743586	892	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTGTGGAGACAGCTT	NA	False	NA	NA	False	NA	NA	NA	24746918	24727827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737347_24737468_24737713_24737774_24738104_24738221_24746739
91773	chr11	-	1892	10	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-2	-3	intron_retention	FALSE	canonical	3	295	junction_9	740.170400801209	8	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGTCTGAACCTTGTTCA	9583	False	NA	NA	False	NA	NA	NA	5828214	5822190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824885_5825053_5825176_5826712_5826990_5828187
91774	chr10	-	1574	6	NIC	ENSMUSG00000034620.18	novel	4793	6	NA	NA	-14	-5	combination_of_known_junctions	FALSE	canonical	3	16	junction_5	112.932546238894	482	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTACCATGTATTCATAAG	NA	False	NA	NA	False	NA	NA	NA	121933075	121917169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932133_121932804
91775	chr11	-	4262	6	NNC	ENSMUSG00000086998.2	novel	596	2	NA	NA	-227	6244	intron_retention	FALSE	non_canonical	0	0	junction_1	0	168	49	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTGAGGGGCCGCAGAC	NA	False	NA	NA	False	NA	NA	NA	46038170	46028365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_46028476_46029664_46029800_46030516_46030603_46030830_46031054_46033741_46033902_46034622
91776	SIRV1	-	1356	6	FSM	SIRV1A	SIRV103	1363	6	4	3	-1	-3	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAATCGATGCATACTTC	NA	False	NA	NA	False	NA	NA	NA	10787	1003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
91777	chr13	-	9558	5	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-239696	162	intron_retention	TRUE	non_canonical	0	0	junction_3	62.1143099454546	95	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCAGGAACCTTGACTTA	NA	False	NA	NA	False	NA	NA	NA	66828875	66577788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66580291_66581478_66581540_66581739_66588326_66588777_66588938_66828626
91778	chr19	-	3073	5	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	-456	2863	intron_retention	TRUE	non_canonical	0	0	junction_1	124.098751000967	591	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTCCCCACAGGGTATAT	1429	False	NA	NA	False	NA	NA	NA	8797153	8783575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8783739_8787676_8788811_8788963_8789203_8793217_8793401_8795799
91779	chr7	+	2674	9	Genic_Genomic	ENSMUSG00000098066.3	novel	633	4	NA	NA	3741	10443	multi-exon	FALSE	non_canonical	0	0	junction_1	0	167	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGGCCCTTCAATTCTC	NA	False	NA	NA	False	NA	NA	NA	92292687	92307093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_92293986_92295197_92295234_92295637_92295731_92296135_92296291_92297148_92297334_92298133_92298240_92298663_92298783_92302356_92302456_92306510
91780	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	3	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
91782	chrUn_MU069435v1	+	589	1	Intergenic	novelGene_4767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGGGCTTTCCCGTGGCA	NA	False	NA	NA	False	NA	NA	NA	0	589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
91784	chr8	+	505	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	11	22	11	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	110	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTTTGAGTAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87774327	87774832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_87774300_87774800
91785	chr11	-	1254	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-179	-73	179	mono-exon	FALSE	NA	NA	NA	NA	NA	309	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
91786	chr6	-	1239	6	NIC	ENSMUSG00000057666.19	novel	1273	7	NA	NA	-16	1	combination_of_known_junctions	FALSE	canonical	3	832	junction_5	4068.19726168729	118	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCCTTGGTTTTAATGCG	NA	False	NA	NA	False	NA	NA	NA	125141895	125138814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125141815
91787	chrM	+	861	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	283	0	283	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	131	False	NA	160	True	NA	NA	NA	14427	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
91788	chr7	+	5711	4	Fusion	ENSMUSG00000071952.4_ENSMUSG00000107181.2	novel	378	4	NA	NA	-9	117890	multi-exon	FALSE	non_canonical	0	0	junction_3	45.1688191369026	12	72	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGATTAAAAGAAGAAGAAA	NA	False	NA	NA	False	NA	NA	NA	42727465	42867157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_42727598_42742038_42742100_42746745_42752085_42866978
91789	chr15	-	2056	8	NNC	ENSMUSG00000033220.8	novel	3038	7	NA	NA	24	32202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.79379228628721	80	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTATTGGGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	78456957	78411164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_78411174_78444331_78445686_78446105_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
91791	chr4	-	4538	13	NIC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	2	-2	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	297.926445060969	587	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAACGGACTGTGTTTGT	6789	False	NA	NA	False	NA	NA	NA	126096438	126057880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126066929_126067123_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109_126088198_126096362
91792	chr11	+	4404	27	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	-10	-580	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	671.13070381084	1535	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTTCACTGACTTAAAATT	NA	False	NA	NA	False	NA	NA	NA	23206030	23247017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206643_23206718_23211834_23211967_23217661_23217764_23218622_23218691_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
91794	chr8	-	1482	10	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-12	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	689.929858664302	2	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTGAGTGTGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	95564905	95549181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555855_95558400_95558443_95558484_95558554_95559142_95559329_95564879
91795	chr16	+	4047	19	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-36966	11	multi-exon	FALSE	non_canonical	0	0	junction_1	0	954	6	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGACAGAGGTGGGCGC	NA	False	NA	NA	False	NA	NA	NA	16130100	16176886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16131907_16132123_16132290_16134199_16134308_16134465_16134641_16136306_16136344_16137317_16137372_16139446_16139538_16141190_16141290_16141489_16141641_16141837_16141960_16147666_16147869_16149859_16149997_16151692_16151817_16154717_16154876_16156452_16156543_16158858_16158932_16159285_16159332_16163860_16164010_16176627
91796	chr10	+	1433	5	Antisense	novelGene_ENSMUSG00000062931.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGACTGCAGTATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	82060947	82077105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_82061188_82061523_82062425_82063361_82063425_82063631_82063759_82077003
91797	chr17	-	3196	13	NIC	ENSMUSG00000024045.7	novel	4183	13	NA	NA	8	-5	intron_retention	FALSE	canonical	3	70	junction_12	151.145533252631	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATTTTTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	32539624	32523671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32536321_32536819_32536853_32537744_32537784_32539431
91798	chr6	+	2285	5	NNC	ENSMUSG00000030137.9	novel	2263	5	NA	NA	-8388	-11	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	2.06155281280883	147	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTATGCGAAGACCTGG	NA	False	NA	NA	False	NA	NA	NA	121179266	121203802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_121179441_121197342_121197566_121198259_121198409_121199692_121200374_121202744
91799	chr4	+	2994	8	NIC	ENSMUSG00000028645.12	novel	2241	9	NA	NA	24	-1	intron_retention	FALSE	canonical	3	565	junction_3	52.731123907721	64	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGGTTTCAAATGCTTGT	693	False	NA	NA	False	NA	NA	NA	118966024	118994526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
91801	chr17	+	2771	18	NIC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	0	191	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	67.7468828685741	102	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAATGCATACCACAGTA	NA	False	NA	NA	False	NA	NA	NA	15261901	15284685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15262004_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283863
91802	chr15	-	9123	1	ISM	ENSMUSG00000036698.12	ENSMUST00000044113.12	13800	19	79943	26	9062	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	518	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCCTCGTATTTACAGC	NA	False	NA	NA	False	NA	NA	NA	72976841	72967718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_72967700_72976800
91804	chr16	+	3403	9	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1315	junction_4	257.023831579875	1014	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930343_22930566
91805	chr11	+	3799	26	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	-34	232	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	588.58920955111	1	66	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATTTTAATTAGGGAGCA	NA	False	NA	NA	False	NA	NA	NA	23206006	23246465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206644_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235207_23235795_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
91806	chr4	+	3114	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	-80	4	-80	-4	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	151	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146586403	146623845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
91807	chr5	+	982	1	Antisense	novelGene_ENSMUSG00000094708.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCATTCTCGGCCTTG	NA	False	NA	NA	False	NA	NA	NA	106010393	106011375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_106010400_106011400
91808	chr1	+	2983	17	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	335	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGACACCGCCTTGGCGC	NA	False	NA	NA	False	NA	NA	NA	20873185	20890474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873878_20875039_20875132_20875486_20875563_20876019_20876123_20876963_20877119_20878950_20879094_20879815_20879947_20880281_20880457_20882188_20882397_20882786_20882918_20883182_20883338_20884621_20884731_20884911_20885151_20886871_20887003_20887465_20887676_20888016_20888129_20890353
91809	chr16	+	3803	8	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	624.255180685146	839	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927470_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22930343_22930566
91810	chr7	+	2420	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	297	5	2	-2	multi-exon	FALSE	canonical	3	986	junction_1	0	1286	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	372	False	NA	NA	False	NA	NA	NA	44465808	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
91811	chr5	+	1945	8	NNC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	4	-223	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_6	549.294724057633	4	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAATAAAGATGTGAAGTT	9089	False	NA	NA	False	NA	NA	NA	124045348	124066675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065120_124065201_124065312
91812	chr14	-	6338	18	NNC	ENSMUSG00000046753.11	novel	4262	18	NA	NA	371	39194	intron_retention	FALSE	non_canonical	0	0	junction_1	0	16	92	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GATAGATACCTAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27205461	27163852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_27163934_27164413_27164576_27168339_27168497_27170108_27170218_27171713_27171816_27171900_27172007_27181733_27181808_27181896_27181970_27183040_27183741_27186000_27186369_27188121_27188267_27193572_27194504_27197649_27197773_27198492_27198655_27199066_27199175_27201582_27201763_27201880_27202047_27202870
91813	chr3	-	5194	5	Antisense	novelGene_ENSMUSG00000047213.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	365	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTCGGGCTCCGCCCCCG	NA	False	NA	NA	False	NA	NA	NA	16271201	16237321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_16237699_16243625_16243724_16257346_16257384_16257989_16259588_16268117
91814	chr15	-	1247	4	NNC	ENSMUSG00000033837.6	novel	1365	3	NA	NA	-42	396	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.328260785661	27	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAAGTCTGGTATTGGGG	NA	False	NA	NA	False	NA	NA	NA	76554044	76552028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76552716_76553125_76553341_76553428_76553534_76553804
91815	chr3	+	3121	13	NIC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	3	-12	intron_retention	FALSE	canonical	3	1281	junction_9	61.3792287522597	3	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTTAAAATAACCAGTACA	NA	False	NA	NA	False	NA	NA	NA	90383466	90395674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
91816	chrM	-	840	1	Antisense	novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	7583	False	NA	NA	False	NA	NA	NA	8605	7765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7800_8600
91817	chr11	-	1921	9	NIC	ENSMUSG00000018566.15	novel	1776	10	NA	NA	-56	-245	intron_retention	FALSE	canonical	3	17	junction_5	1.98431348329844	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTCCCACATCCGTGGCC	NA	False	NA	NA	False	NA	NA	NA	69838856	69834862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
91818	chr9	+	938	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	901	-1	-91	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	5	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
91819	chr1	+	1227	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-33	21977	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8590.17096453848	371	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAATGGGAGGCTCTTA	NA	False	NA	NA	False	NA	NA	NA	86454495	86480411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686_86458337_86480254
91820	chr2	+	1795	8	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	-10	376	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3861.31098600103	2	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACCCCTGACTGGCTGGC	7522	False	NA	NA	False	NA	NA	NA	75489651	75496841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493201_75495741
91821	chr4	-	4970	18	ISM	ENSMUSG00000007880.17	ENSMUST00000145664.9	8187	20	32615	1858	-220	-925	3prime_fragment	FALSE	canonical	3	84	junction_14	29.4068231142832	10	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCGTCCTCTCCCCCC	NA	False	NA	NA	False	NA	NA	NA	133448307	133408176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_133409367_133411745_133411877_133412184_133413077_133413539_133413637_133413714_133413868_133413950_133414102_133414514_133414688_133414848_133414982_133416364_133416573_133418380_133418591_133420109_133420220_133420315_133420462_133421068_133421382_133421973_133422142_133422882_133422973_133423226_133423468_133446847_133446965_133447860
91822	chr16	+	564	1	Intergenic	novelGene_3743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
91823	chr17	+	2441	1	Intergenic	novelGene_201	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGTCGCTCGTCGACCT	NA	False	NA	NA	False	NA	NA	NA	40153887	40156328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156300
91824	chr14	-	4580	20	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-46	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.7757103209789	3	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655283	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655113
91825	chr11	-	1430	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	985.126819247146	12	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9578	False	NA	NA	False	NA	NA	NA	5828219	5822187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824156_5824386_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828187
91826	chr17	+	1191	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	43	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2028.26777324889	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3079	False	NA	NA	False	NA	NA	NA	35816957	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817385_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821276_35821400
91827	chr18	+	6296	34	NNC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	-5	34307	intron_retention	FALSE	non_canonical	0	0	junction_16	394.127940892891	102	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCACTTCCCACCGTGTC	5	True	NA	NA	False	NA	NA	NA	9958171	10029796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320_9996249_9997172_9997281_9997716_9997775_10000494_10000623_10001769_10001864_10002367_10002434_10004895_10005015_10005633_10005716_10007766_10007850_10009953_10010083_10012212_10012269_10016534_10016645_10017990_10018098_10024505_10024682_10029640
91828	chr11	+	3918	2	ISM	ENSMUSG00000017776.16	ENSMUST00000017920.14	3642	3	13096	-840	12813	-3	3prime_fragment	FALSE	canonical	3	225	junction_1	0	4	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTTACTATGTTGAATGT	6048	False	NA	NA	False	NA	NA	NA	75583180	75597731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75583559_75594191
91829	chr7	+	3039	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	113	845	-75	244	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	1313	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	NA	NA	NA	102091014	102118133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
91830	chr1	-	6782	23	NNC	ENSMUSG00000046836.14	novel	3430	14	NA	NA	-26537	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	61.6922681574703	580	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCGCTGGATTTATGT	NA	False	NA	NA	False	NA	NA	NA	183105350	183057917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446_183079171_183085610_183085681_183087356_183087411_183087817_183087875_183094595_183094658_183094911_183095015_183097511_183097636_183099744_183099868_183103136_183103257_183103343
91831	chr15	-	4246	12	ISM	ENSMUSG00000022387.18	ENSMUST00000109381.9	5152	13	4128	2	666	-2	3prime_fragment	FALSE	canonical	3	209	junction_6	130.198767307008	338	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTTGTCCCGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	88614308	88571238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_88572684_88573711_88573867_88574064_88574175_88575410_88575539_88575951_88576088_88584975_88585474_88591236_88591498_88596818_88597132_88597500_88597630_88598088_88598221_88601108_88601266_88613526
91832	chrM	-	1021	2	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	9	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACATCATCATAATCTAAT	-65	True	NA	NA	False	NA	NA	NA	11543	9864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10482_11139
91833	chr8	+	280	2	ISM	ENSMUSG00000031762.8	ENSMUST00000212806.2	388	3	282	0	282	0	3prime_fragment	FALSE	canonical	3	13494	junction_1	0	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCTTGTCTCTGTGCAT	NA	False	NA	NA	False	NA	NA	NA	94899769	94900192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_94899821_94899963
91834	chr13	+	6690	45	FSM	ENSMUSG00000033991.10	ENSMUST00000224386.2	6976	45	68	218	68	-8	multi-exon	FALSE	canonical	3	133	junction_18	35.3654766990177	597	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTGAGCTGTCATGTA	NA	False	NA	NA	False	NA	NA	NA	76246920	76338217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259791_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718_76335814_76336551
91835	chr18	+	2143	15	ISM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	10333	-15	-5463	-5	intron_retention	FALSE	canonical	3	630	junction_1	68.3736731766948	32	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGGTGGCTTTTGATG	460	False	NA	NA	False	NA	NA	NA	32980696	32999468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
91836	chr4	+	6876	4	Intergenic	novelGene_1893	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	79	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAGTTCTGCACAAACTA	NA	False	NA	NA	False	NA	NA	NA	74585050	74596973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_74585236_74585729_74589699_74594206_74596573_74596617
91837	chr2	+	2586	21	NNC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	57	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	183.299447626009	66	25	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAAGAACAGCAGACCT	NA	False	NA	NA	False	NA	NA	NA	166857169	166876840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875567_166875686_166875775_166875955_166876044_166876392_166876465_166876558
91838	chrX	-	7674	26	NNC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	428	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	98.8077405874661	8	79	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCATCTGGTATTTACCC	NA	False	NA	NA	False	NA	NA	NA	73009529	72986403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003315_73009416
91839	chr15	-	353	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	60	-35	60	35	mono-exon	FALSE	NA	NA	NA	NA	NA	29	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	90648799	90648446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_90648400_90648800
91840	chr9	+	1029	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	810	-1	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	52	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
91841	chr5	-	4915	22	ISM	ENSMUSG00000029475.18	ENSMUST00000086200.11	4999	23	729	15	729	-15	3prime_fragment	FALSE	canonical	3	10	junction_20	155.721246385854	16	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATAAACAATTGTACAAA	9686	False	NA	NA	False	NA	NA	NA	123125867	123008758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123070529_123071015_123072795_123072923_123079015_123079132_123085789_123085944_123087132_123087227_123099075_123099183_123099472_123099652_123120839_123120887_123122524_123122604_123125724
91842	chr18	-	9729	55	Fusion	ENSMUSG00000024370.18_ENSMUSG00000003778.15	novel	4468	22	NA	NA	-2	-2	intron_retention	FALSE	non_canonical	0	0	junction_23	434.183711741744	3075	32	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAAACTCTGGCCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	34784777	34732884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34738980_34739040_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442
91843	chr9	-	4120	23	NNC	ENSMUSG00000086728.3	novel	452	2	NA	NA	2760	27908	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATGAGAGGGAACGCCC	NA	False	NA	NA	False	NA	NA	NA	57035422	56979325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_56979346_56988376_56988487_56993864_56994079_56996656_56996837_57001718_57001826_57002580_57002864_57004003_57004255_57005106_57005262_57005388_57005547_57008399_57008489_57011151_57011273_57011877_57012088_57012860_57012978_57014635_57014875_57015989_57016174_57017860_57018437_57020829_57020997_57024662_57024838_57025351_57025445_57026374_57026470_57032450_57032659_57034429_57034707_57035331
91844	chr11	+	6805	17	Antisense	novelGene_ENSMUSG00000093358.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGGCAGATTGGCTGGAA	4126	False	NA	NA	False	NA	NA	NA	95847996	95873437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_95849147_95849184_95849340_95849411_95853345_95854367_95854419_95857002_95857113_95857472_95857607_95858372_95858450_95859188_95859309_95859624_95859748_95860674_95860810_95861493_95861617_95863869_95864008_95864765_95865047_95866085_95866152_95870109_95870158_95870444_95870495_95873326
91845	chr16	-	564	1	Intergenic	novelGene_3744	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
91846	chr4	-	3164	7	FSM	ENSMUSG00000041459.16	ENSMUST00000165113.8	6495	7	231	3100	0	-16	multi-exon	FALSE	canonical	3	205	junction_1	333.080404040159	144	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTGCCACCAACAGTTT	NA	False	NA	NA	False	NA	NA	NA	148711222	148699938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
91847	chr12	-	3488	8	NNC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	0	-32	intron_retention	FALSE	non_canonical	0	0	junction_1	115.433168225301	7	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAAAGTGGTAATTAAATT	NA	False	NA	NA	False	NA	NA	NA	87490606	87472970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87473540_87474328_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488551_87490411
91848	chr5	+	1353	2	FSM	ENSMUSG00000086075.2	ENSMUST00000140833.2	3492	2	40	2099	-36	815	multi-exon	FALSE	canonical	3	12	junction_1	0	169	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGTAGGTATACATGCAG	NA	False	NA	NA	False	NA	NA	NA	117527243	117529464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_117527351_117528218
91849	chr13	-	2717	5	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7324	967	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	31.6968058327649	361	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	1870	False	NA	NA	False	NA	NA	NA	66439289	66427982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66429686_66429768_66430468_66431558_66431631_66431830_66431958_66439173
91850	chr14	-	4421	26	NNC	ENSMUSG00000035726.9	novel	4673	26	NA	NA	186	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	238.084677373408	4	94	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAACTTGTCTCTTATGA	NA	False	NA	NA	False	NA	NA	NA	52434687	52397876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52399280_52400143_52400189_52400667_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
91851	chr17	-	889	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCGAGCCCTGGATAGGCC	NA	False	NA	NA	False	NA	NA	NA	40157643	40156754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40156800_40157600
91852	chr11	-	3138	11	ISM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	17587	0	1521	0	3prime_fragment	FALSE	canonical	3	338	junction_8	32.466752224391	3	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	NA	False	NA	NA	NA	69631876	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824
91853	chr17	-	5789	6	NIC	ENSMUSG00000015120.16	novel	824	7	NA	NA	-8	1406	intron_retention	FALSE	canonical	3	4214	junction_5	346.443068916092	102	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	4739	False	NA	NA	False	NA	NA	NA	25492365	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25487588_25488165_25488250_25488376_25488454_25492294
91854	chr4	-	4887	8	NNC	ENSMUSG00000078584.10	novel	657	6	NA	NA	-2	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	185.65229734696	795	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTCGGCCAAAAGTTTTG	NA	False	NA	NA	False	NA	NA	NA	119089884	119077052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119077439_119077572_119079104_119079306_119080682_119082569_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
91855	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	1390	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	9943	8797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_-_8976_9189_9299_9434
91856	chr5	-	2781	11	Antisense	novelGene_ENSMUSG00000029521.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATCCGACCTCGAAAACA	NA	False	NA	NA	False	NA	NA	NA	111022006	110989081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_110989408_110996252_110996379_110996494_110996642_110997459_110997551_111003588_111003708_111006242_111006294_111008728_111008791_111011123_111011222_111013385_111013473_111014126_111014469_111020674
91857	chr13	+	2544	4	Antisense	novelGene_ENSMUSG00000072066.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGCAGAGTAGGGGAAC	NA	False	NA	NA	False	NA	NA	NA	62750936	62771949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_62753193_62754937_62755000_62755185_62755314_62771851
91858	chr4	+	2776	19	FSM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	-201	-67	-201	0	multi-exon	FALSE	canonical	3	88	junction_8	27.1993100856585	172	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGAGAAGCAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	155048378	155065395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
91859	chr6	-	1976	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.24264068711928	46	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATACAGTGTTTTTAAGT	7476	False	NA	NA	False	NA	NA	NA	122691588	122687362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122687540_122688541_122688759_122689580_122689666_122690091
91860	chr6	+	555	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	-37	-47	-37	47	mono-exon	FALSE	NA	NA	NA	NA	NA	22	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGCTTCACAATGCAG	NA	False	NA	NA	False	NA	NA	NA	122433825	122434380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122433800_122434400
91861	chr15	-	3056	10	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGTCTGTTTT	3546	False	NA	NA	False	NA	NA	NA	102005587	101995006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101995075_101997050_101997187_101997289_101997469_101998303_101998528_101999829_101999928_102001418_102001633_102002090_102002147_102003104_102003211_102003409_102003483_102003685
91862	chr8	+	4300	16	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	0	intron_retention	FALSE	non_canonical	0	0	junction_10	262.622618980163	5	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387560_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
91863	chr2	+	1297	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCGAAAGGGAGCGACACCC	NA	False	NA	NA	False	NA	NA	NA	154714460	154734741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102_154730283_154734611
91864	chr14	-	4092	19	NNC	ENSMUSG00000022185.20	novel	4735	19	NA	NA	-66	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	168.604585266355	22	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCTGACTTAGTTTTG	2564	False	NA	NA	False	NA	NA	NA	54924454	54879644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54880296_54880418_54880506_54881180_54881282_54881397_54881465_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54902876_54902948_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
91865	chr12	-	1513	6	Antisense	novelGene_ENSMUSG00000001175.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	238	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCGAGCCTGTGTGCCGC	7401	False	NA	NA	False	NA	NA	NA	100173563	100165785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_100165975_100168650_100168680_100169830_100169977_100171870_100171977_100172354_100172491_100172656
91866	chr2	+	2333	7	Fusion	ENSMUSG00000059005.14_ENSMUSG00000093242.4	novel	1074	10	NA	NA	5	1173	multi-exon	FALSE	non_canonical	0	0	junction_6	4132.11683711334	75	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGTCCTTTTATTCATAT	7486	False	NA	NA	False	NA	NA	NA	75489615	75497638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493087_75496010
91867	chr16	+	2969	27	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	36	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	351.400968314751	16	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACATTTCCTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	48251635	48451268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272919_48281051_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
91868	chr4	+	4695	23	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	-6	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_22	161.246545225339	58	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATCTGAATTTGTACTG	NA	False	NA	NA	False	NA	NA	NA	130390710	130508864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082_130508028_130508625
91869	chr4	+	3132	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	3301	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	124.971343654031	148	37	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGGAATGAAATAGATTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147601244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801_147597378_147597462_147597630_147597965_147598100_147599018_147599725_147600065
91871	chr10	+	4794	10	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	78	8	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGGATGGGGAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	62647005	62675387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649190_62649300_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955
91872	chr17	+	1129	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1666.82531778228	76	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3055	False	NA	NA	False	NA	NA	NA	35816933	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821245_35821456
91874	chr15	+	3274	6	ISM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	1	-56	1	56	intron_retention	FALSE	canonical	3	12199	junction_1	1182.5388619407	22	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGCCCCTGGTAAATGCT	NA	False	NA	NA	False	NA	NA	NA	103148881	103153438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806
91875	chr15	-	1682	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-15	combination_of_known_junctions	FALSE	canonical	3	214	junction_6	10263.2056761033	42	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATATTTCTACTCACACT	3572	False	NA	NA	False	NA	NA	NA	79967553	79962010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
91876	chr17	-	7770	16	Antisense	novelGene_ENSMUSG00000092981.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	471	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCGGACGAGACCAGGCGG	NA	False	NA	7	True	NA	NA	NA	24043701	24022611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_24022972_24025905_24026176_24027038_24027148_24027327_24027490_24028939_24029020_24029385_24029448_24029710_24029744_24030002_24030055_24030611_24030704_24031399_24031593_24034093_24039302_24040534_24040663_24041384_24041673_24042762_24042877_24042987_24043089_24043183
91877	chr15	-	1055	7	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	706.396823479708	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTGGTTGTTCAGTTGCC	NA	False	NA	NA	False	NA	NA	NA	51728879	51649972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662728_51728717
91878	chr2	-	3597	13	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	4	-50	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	397.631529601632	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTGTGTCTTAATG	NA	False	NA	NA	False	NA	NA	NA	94268477	94242076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
91879	chr9	-	3744	19	Antisense	novelGene_ENSMUSG00000032178.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	523	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAGGTGCAGGGCCACGT	8586	False	NA	NA	False	NA	NA	NA	21313087	21279190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_21279394_21298993_21299093_21299403_21299446_21299818_21300049_21300600_21300780_21303590_21303737_21305004_21305097_21305488_21305586_21306125_21306236_21306663_21306763_21307313_21307425_21307509_21307622_21308762_21308963_21309262_21309431_21310418_21310545_21310709_21310887_21310978_21311135_21311252_21311310_21311747
91880	chr9	-	814	4	NIC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	-11	-4	intron_retention	FALSE	canonical	3	450	junction_1	39.9082280572148	806	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTTGTTGCTCAGTT	8636	False	NA	NA	False	NA	NA	NA	108444140	108443063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108443275_108443357_108443459_108443539_108443951_108444049
91881	chr16	-	1153	7	NNC	ENSMUSG00000033809.16	novel	1132	7	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	157.124154731219	54	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	NA	False	NA	NA	NA	20429502	20424221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20424468_20424611_20424755_20425273_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429292
91882	chr16	+	3189	4	ISM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	127	-1039	-19	1039	intron_retention	FALSE	canonical	3	9815	junction_1	1814.47813127877	23	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGAGGGTATGACTAGC	NA	False	NA	NA	False	NA	NA	NA	55786764	55792837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872
91883	chr10	+	1976	16	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	2	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	725.97409197727	1	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTCTCATGGGATGCTG	NA	False	NA	NA	False	NA	NA	NA	111309089	111332735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309125_111309173_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326906_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
91884	chr4	+	2980	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	375	3	NA	NA	25	-282	multi-exon	FALSE	non_canonical	0	0	junction_2	190.891257584579	7	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGCATTTTGTATATT	NA	False	NA	NA	False	NA	NA	NA	145136860	145265476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136997_145138756_145138851_145160270_145160423_145245504_145245556_145257381_145257486_145261385_145261513_145263160
91885	chr4	+	3675	7	NIC	ENSMUSG00000028645.12	novel	2241	9	NA	NA	0	-310	intron_retention	FALSE	canonical	3	565	junction_3	46.9872914260394	5	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGAGCTCTTTGTGCTG	669	False	NA	NA	False	NA	NA	NA	118966000	118994870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118990737_118991051_118991157_118991565_118991668_118992925
91886	chr2	-	3634	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	4	-54	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	379.401631036473	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATTTTGTTTTGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	94268477	94242080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255397_94255957_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
91887	chr6	+	2798	5	Antisense	novelGene_ENSMUSG00000057666.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCACCATTTTGTCTAC	2342	False	NA	NA	False	NA	NA	NA	125139021	125142245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_125139069_125139177_125139356_125139439_125139672_125139805_125140006_125140104
91888	chr15	-	3882	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	9795	False	NA	NA	False	NA	NA	NA	22705095	22699885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22701058_22702288_22704553_22704649
91889	chr9	+	3756	5	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	6	-160	intron_retention	FALSE	canonical	3	18488	junction_2	917.554732699908	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGGTGACAAACCCTTGT	NA	False	NA	NA	False	NA	NA	NA	64080662	64085788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64083499_64084222_64084760_64085002_64085300_64085504
91890	chr2	+	1202	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11386	200	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTTTGCTGCAACCC	NA	False	NA	NA	False	NA	NA	NA	11413648	11426231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425626_11426117_11426174
91891	chr6	-	5435	25	NNC	ENSMUSG00000030243.17	novel	3389	15	NA	NA	12	4662	intron_retention	FALSE	non_canonical	0	0	junction_1	73.1624903895432	57	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTACCCGGAAGAGACGCTG	6243	False	NA	NA	False	NA	NA	NA	142332750	142291405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_142291530_142293279_142293363_142294246_142294367_142296785_142296915_142299248_142300510_142302206_142302308_142303103_142303234_142304119_142304238_142304761_142304882_142306581_142306721_142307477_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332587
91892	chr7	-	3778	10	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	26	1642	combination_of_known_junctions	FALSE	canonical	3	1495	junction_4	203.626988921616	69	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAACAAGTCAGGGATGG	NA	False	NA	NA	False	NA	NA	NA	79765114	79742951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
91893	SIRV10001	-	3317	1	Antisense	novelGene_SIRV10001A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	201	64	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	3317	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV10001_-_0_3300
91894	chr16	-	2669	6	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-462	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	469.825329244816	15	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTGGCCAAATCAGTTCA	8675	False	NA	NA	False	NA	NA	NA	33787373	33775625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782407_33784243_33784296_33787195
91895	chr6	-	544	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	-27	0	-27	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	646	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	115785735	115782465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
91896	chr11	-	4148	5	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	-250	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	560.391994500278	6	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96719031	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96709305_96709625_96711343_96712076_96712236_96712929_96713146_96718023
91898	chr17	+	2058	1	Intergenic	novelGene_196	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1273	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGGTTTGGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
91900	chr4	+	2589	2	ISM	ENSMUSG00000065999.14	ENSMUST00000081742.7	2762	6	27794	12	27794	-12	3prime_fragment	FALSE	canonical	3	101	junction_1	0	313	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTCAACAAGTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	147665589	147669643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_147665826_147667290
91902	chr9	-	601	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	18	0	18	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	890	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	NA	NA	NA	78275441	78274333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
91903	chrX	-	5208	1	Intergenic	novelGene_3964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	209	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCGGACGTGTCACTCCT	NA	False	NA	NA	False	NA	NA	NA	80695643	80690435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_80690400_80695600
91904	chr10	-	8259	22	NNC	ENSMUSG00000040354.15	novel	2962	22	NA	NA	8	5424	intron_retention	TRUE	non_canonical	0	0	junction_1	418.075918850754	1914	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTCAAGAGCGGAGAGCG	NA	False	NA	NA	False	NA	NA	NA	127147647	127126665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127129426_127129521_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
91905	chrM	-	1648	1	Antisense	novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000065947.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGAAGGTAGATGGCAT	-66	True	NA	NA	False	NA	NA	NA	11544	9896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_9900_11500
91906	chr5	-	3020	13	ISM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	32719	-12	32111	12	3prime_fragment	FALSE	canonical	3	1098	junction_8	90.9555370619196	6	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTCTTGTTCTTAATG	6946	False	NA	NA	False	NA	NA	NA	122607569	122594390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412
91907	chrX	+	8765	21	NIC	ENSMUSG00000034160.14	novel	5384	22	NA	NA	-1	-5	intron_retention	FALSE	canonical	3	215	junction_1	109.796356952314	561	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATGGCTTGGTGTAG	NA	False	NA	NA	False	NA	NA	NA	100683698	100727952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
91909	chr2	-	4681	19	Fusion	ENSMUSG00000058835.15_ENSMUSG00000069136.5	novel	3023	11	NA	NA	0	-239	intron_retention	FALSE	non_canonical	0	0	junction_1	142.33576197078	27	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGCACCGGAAGCGCGAAG	NA	False	NA	NA	False	NA	NA	NA	22930207	22785571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_22785773_22791290_22791356_22791761_22791884_22796804_22796937_22802610_22802752_22805211_22805325_22805425_22805537_22819551_22819630_22819752_22819868_22825568_22825650_22829832_22832060_22836587_22836774_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
91910	chr18	-	4478	22	NNC	ENSMUSG00000042211.8	novel	4254	22	NA	NA	-175	90	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_21	58.4071253380051	282	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTCTTGCCATGGACTT	NA	False	NA	NA	False	NA	NA	NA	62681941	62637135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681723
91911	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	9943	8797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_-_8976_9189_9299_9434
91912	chr17	-	2224	1	FSM	ENSMUSG00000093009.3	ENSMUST00000175268.3	66	1	-1447	-711	-1447	711	mono-exon	FALSE	NA	NA	NA	NA	NA	1	95	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6014	False	NA	NA	False	NA	NA	NA	35171440	35169216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169200_35171400
91913	chr3	+	1872	9	NNC	ENSMUSG00000078578.10	novel	738	8	NA	NA	-19	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1101.99308074053	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGCTATTGGATTGTTTG	NA	False	NA	NA	False	NA	NA	NA	135144057	135172428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955_135172086_135172351
91914	chr17	-	820	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	938	0	0	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	40	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	NA	False	NA	NA	NA	15718560	15696220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
91915	chr18	-	945	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	35	-15	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	1594	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTGAAAAAAAAAAAAAAAAA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
91916	chr17	+	4739	21	NNC	ENSMUSG00000038141.12	novel	1517	9	NA	NA	4429	9120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	338.957648534445	99512	56	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCGCAGGCGCGGCCA	NA	False	NA	NA	False	NA	NA	NA	6325173	6367709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6325316_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271_6361221_6361568_6361646_6361983_6362110_6365190_6365232_6367643
91917	chr3	+	6824	17	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	1593	-480	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	105.535224421754	2	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCTGAGCAAAACGTTCCT	NA	False	NA	NA	False	NA	NA	NA	116654808	116701346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116655359_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717_116698142_116698203
91918	chr5	+	1584	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTCAATGGGGTACTT	NA	False	NA	NA	False	NA	NA	NA	142888871	142891133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890003_142890099_142890540_142890995
91919	chr16	-	2605	4	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-343	857	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	32.8870119584549	7	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTAGTTCACATAAGCA	6228	False	NA	NA	False	NA	NA	NA	93592132	93588166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_93590271_93590397_93590505_93591456_93591715_93591996
91920	chr4	+	3074	7	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	15	-232	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	196.482399551037	391	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAAAGAGTATCTGGC	941	False	NA	NA	False	NA	NA	NA	145237375	145265526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237585_145241499_145241589_145243726_145243846_145245495_145245556_145257381_145257486_145261385_145261513_145263160
91921	chr1	+	7558	50	NIC	ENSMUSG00000006005.19	novel	7480	51	NA	NA	20	0	intron_retention	FALSE	canonical	3	414	junction_6	74.4876712025745	550	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTATCACTGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	150269154	150325678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
91922	chr3	+	5536	7	Intergenic	novelGene_3090	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	172	70	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTAGCTTTCTTTGTAGTC	3226	False	NA	NA	False	NA	NA	NA	22334711	22862853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_22337373_22506626_22507847_22514758_22515129_22543661_22543671_22729735_22730219_22762808_22763013_22862264
91923	chr10	-	4434	16	NNC	ENSMUSG00000020114.13	novel	7766	15	NA	NA	1	-3109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	192.919833667309	297	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATTCTTCACAATACAC	227	False	NA	NA	False	NA	NA	NA	119075959	119038268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355_119052613_119053845_119053970_119055494_119055650_119063307_119063452_119075545_119075658_119075879
91924	chr5	+	5172	4	Intergenic	novelGene_862	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	125	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTATCTTGAAATCCATA	NA	False	NA	NA	False	NA	NA	NA	133971363	133983646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_133971371_133978289_133979377_133979505_133983351_133983413
91925	chr1	+	3501	7	FSM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	135	0	-55	0	multi-exon	FALSE	canonical	3	170	junction_1	15.8893745069534	353	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	NA	False	NA	NA	NA	82294307	82423087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
91926	chr15	+	1385	1	NIC	ENSMUSG00000059883.17	novel	2831	12	NA	NA	19394	-3856	mono-exon	FALSE	NA	NA	NA	NA	NA	20	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CTTAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	94460946	94462331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_94460900_94462300
91927	chr11	+	8767	24	NNC	ENSMUSG00000020697.17	novel	4560	20	NA	NA	1	14332	intron_retention	FALSE	non_canonical	0	0	junction_20	71.0962764798591	380	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAGGAGAGGGAGAGGTA	NA	False	NA	NA	False	NA	NA	NA	82671961	82709432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_82672103_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106_82697020_82700826_82701045_82701853_82701940_82703227_82703637_82709241
91928	chrM	-	775	1	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTAGTTGTATGTACC	9955	False	3673	79	True	NA	NA	NA	3630	2855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2900_3600
91929	chr7	-	5643	16	FSM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	183	169	152	-169	multi-exon	FALSE	canonical	3	78	junction_15	55.0229850961295	278	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTGTATTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	92318959	92292919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92309005_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
91930	chr4	+	15659	105	ISM	ENSMUSG00000066036.15	ENSMUST00000097822.10	15928	106	7710	64	7700	-6	3prime_fragment	TRUE	canonical	0	0	junction_68	97.9092684686746	472	28	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAAAGGGGTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	139115679	139216835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_139115777_139118150_139118255_139119095_139119226_139119330_139119471_139120094_139120198_139120327_139120470_139120605_139120731_139123867_139123993_139124463_139124524_139124604_139124796_139126872_139126973_139127107_139127246_139127635_139127754_139128591_139128780_139129819_139129980_139130057_139130144_139133789_139133960_139135023_139135307_139135850_139135987_139136149_139136230_139136983_139137113_139137398_139137582_139137717_139137841_139137932_139138163_139139936_139140059_139140722_139140821_139141653_139141812_139142310_139142521_139143863_139143966_139144166_139144268_139144501_139144701_139145712_139145902_139146478_139146543_139147689_139147882_139148391_139148463_139148541_139148690_139149007_139149236_139149703_139149875_139151137_139151321_139152070_139152230_139152523_139152677_139153009_139153238_139154088_139154247_139155345_139155518_139155800_139156003_139156802_139156967_139157434_139157652_139158855_139159073_139160930_139160995_139161304_139161440_139162320_139162496_139163432_139163571_139164383_139164506_139165360_139165473_139167721_139167853_139167955_139168134_139168502_139168608_139169996_139170135_139170709_139170885_139171905_139172003_139172554_139172663_139173169_139173287_139174169_139174380_139176132_139176283_139177625_139177854_139178556_139178636_139179038_139179285_139179881_139180051_139180445_139180591_139181282_139181369_139182477_139182566_139182758_139182953_139184842_139185083_139185405_139185545_139186109_139186236_139186336_139186466_139187309_139187654_139189138_139189230_139189488_139189574_139189712_139189841_139190590_139190721_139190808_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
91931	chr5	+	10468	52	Intergenic	novelGene_813	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	291	50	11	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGAGGCTCGAGCGCGCCG	1926	False	NA	NA	False	NA	NA	NA	110812243	110918422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110813940_110814404_110814482_110815331_110815481_110815928_110816056_110816414_110816612_110818740_110818962_110820973_110821162_110821274_110821489_110822728_110822836_110822908_110822955_110824315_110824613_110824724_110824805_110827829_110827886_110828006_110828145_110830664_110830845_110831007_110831244_110831711_110831868_110831953_110831996_110832393_110832533_110832941_110833027_110833217_110833376_110835662_110835808_110836057_110836169_110839483_110839681_110841030_110841202_110841284_110841488_110843137_110843404_110843817_110843914_110845074_110845176_110849548_110849655_110851315_110851484_110852746_110852938_110855798_110855930_110856026_110856204_110856637_110856809_110858895_110859029_110866944_110867127_110867294_110867490_110868601_110868710_110872287_110872377_110874754_110874818_110875397_110875442_110877096_110877175_110877681_110877830_110881584_110881773_110883218_110883516_110887163_110887547_110888046_110888156_110889835_110889927_110903262_110904632_110916175_110916276_110918354
91932	chr8	+	2263	7	NNC	ENSMUSG00000002395.15	novel	1064	9	NA	NA	-11	967	intron_retention	FALSE	non_canonical	0	0	junction_4	414.447590842987	154	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTACAATATTCTCATAT	NA	False	NA	NA	False	NA	NA	NA	71819574	71823343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71819723_71819878_71820338_71820413_71820493_71820602_71820763_71821490_71821948_71822170_71823030_71823242
91933	chr11	-	7566	31	NNC	ENSMUSG00000020422.15	novel	7897	31	NA	NA	19473	-12	at_least_one_novel_splicesite	TRUE	canonical	1	14	junction_30	15.8334736835885	243	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAAGTCTAATGAAGCAT	3565	False	NA	NA	False	NA	NA	NA	8555414	8381663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_8382706_8382750_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8555105
91934	chr3	+	5918	24	NNC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	28	-115	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	107.784581773336	13	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCCTCCTGCCTCTGCCC	NA	False	NA	NA	False	NA	NA	NA	88742588	88807691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88743050_88744296_88744828_88753694_88753887_88761908_88762103_88762932_88763008_88763121_88763173_88763725_88763777_88764434_88764534_88765693_88765814_88766195_88766367_88770726_88770920_88776056_88776159_88777109_88777160_88787369_88787482_88794212_88794412_88794865_88794953_88796977_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236
91935	chr4	-	2401	14	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	362.615172481254	8	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484691	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476094_116484528
91936	chr14	-	5069	21	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-95	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	74.6611512099834	2	20	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655332	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650180_54650242_54651336_54651471_54654045_54654228_54655205
91937	chr4	-	1532	8	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	39	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	540.414051389095	94	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137523656	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469589_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
91938	chr3	+	4493	18	NIC	ENSMUSG00000068823.11	novel	3849	19	NA	NA	-1	3	intron_retention	FALSE	canonical	0	0	junction_11	4679.46481649965	19	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCCTGTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	102927926	102965123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102963794_102964201
91939	chr5	+	2860	20	NIC	ENSMUSG00000005672.13	novel	5214	21	NA	NA	39	1824	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	331.730241172835	6	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGATTCCGCCTTTACGA	805	False	NA	NA	False	NA	NA	NA	75735653	75815340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_75735779_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
91940	chr4	-	5169	11	Fusion	ENSMUSG00000078495.11_ENSMUSG00000062518.8	novel	2885	4	NA	NA	-18	-46	multi-exon	TRUE	non_canonical	0	0	junction_1	82.5898904224966	16	123	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	9505	False	NA	NA	False	NA	NA	NA	147894263	147758004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147758702_147759037_147759878_147760374_147760511_147762673_147762801_147845677_147845736_147876648_147876720_147876902_147877601_147877664_147878385_147878595_147880185_147891546_147891641_147894124
91941	chr1	-	1626	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-841	-2	-841	2	mono-exon	FALSE	NA	NA	NA	NA	NA	150	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
91942	chr7	-	5019	1	Intergenic	novelGene_3049	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	185	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCAAGAAGCAAGAGAGCAA	NA	False	NA	NA	False	NA	NA	NA	137248673	137243654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_137243700_137248700
91943	chr14	-	9032	46	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	28	-7	at_least_one_novel_splicesite	FALSE	canonical	3	255	junction_40	115.220754303303	695	51	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATAAACGCTCCCTGTCAT	NA	False	NA	NA	False	NA	NA	NA	14651788	14518191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547059_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556819_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217_14573388_14573592_14573684_14575085_14575247_14575515_14575640_14575885_14576030_14576786_14576901_14577499_14577694_14578906_14579044_14580511_14580639_14582098_14582237_14585025_14585224_14585850_14586014_14587488_14587567_14588071_14588191_14596280_14596429_14599895_14599994_14601987_14602237_14651329
91944	chr13	-	4545	4	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7496	1305	intron_retention	TRUE	non_canonical	0	0	junction_1	97.2830920561225	687	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACCTTGACTTAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	66828889	66816686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66818131_66818214_66821069_66821267_66821395_66828769
91945	chr5	-	2541	12	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-62	-3	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_11	216.940407706512	1375	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATTTTCCACTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	34093656	34055262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34085642_34085708_34093369
91946	chr1	-	6677	43	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9480	-46	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_42	312.065920742539	119	39	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAATTCTGGGCTGTGTG	NA	False	NA	NA	False	NA	NA	NA	84827717	84702030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84773410_84773537_84792543_84792691_84822070_84822113_84827643
91947	chr2	+	2077	5	Intergenic	novelGene_2823	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_3	16.5378354085412	26	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGCTAATTTATATTTAT	NA	False	NA	NA	False	NA	NA	NA	172419642	172468686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172419745_172420215_172420303_172430932_172431176_172449327_172449528_172467241
91948	chr15	+	2837	7	NIC	ENSMUSG00000022253.18	novel	420	4	NA	NA	27	-407	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	141.542396475402	219	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATTCACTTGAGTTAAAG	2521	False	NA	NA	False	NA	NA	NA	9094762	9110572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_9094925_9096102_9096182_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
91949	chr8	-	3352	8	NIC	ENSMUSG00000003813.16	novel	1842	9	NA	NA	0	-27	intron_retention	FALSE	canonical	3	805	junction_2	200.57905968389	25	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGCCCTAATAATGGTTC	NA	False	NA	NA	False	NA	NA	NA	85567294	85561566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85562304_85562383_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
91950	chr14	-	2466	17	NNC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	2	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	191.984984764434	14	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCTTTACCCTGCT	4861	False	NA	NA	False	NA	NA	NA	54754816	54744654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753601_54753953_54754073_54754703
91951	chr13	+	5275	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	28	-1290	22	1290	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	358	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCCAGGACCTCTACATG	NA	False	NA	NA	False	NA	NA	NA	108350965	108423507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
91952	chrM	+	733	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	221	1	221	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	99	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	-2	True	NA	-23	True	NA	NA	NA	290	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_300_1000
91953	chr5	-	8064	10	ISM	ENSMUSG00000042121.17	ENSMUST00000159592.8	8436	15	32284	1	5146	-1	3prime_fragment	FALSE	canonical	3	351	junction_6	37.1556618818255	280	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTGTATGCTATGCTTT	NA	False	NA	NA	False	NA	NA	NA	114099671	114075155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410
91954	chr8	+	682	1	Genic_Genomic	ENSMUSG00000031548.8	novel	NA	NA	NA	NA	37647	198	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTCTGTCTGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	23939164	23939846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_23939200_23939800
91955	chr11	+	1978	9	ISM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	34289	755	762	-7	3prime_fragment	FALSE	canonical	3	336	junction_8	81.8993284465752	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAACTCTCACAATAAA	NA	False	NA	NA	False	NA	NA	NA	80134198	80157557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
91956	chr16	+	3076	9	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	380	junction_8	647.673227310656	8	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
91957	chrX	+	4586	2	NNC	ENSMUSG00000051827.12	novel	795	4	NA	NA	-8	3	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACATTTGTTTTGTGCTTC	NA	False	NA	NA	False	NA	NA	NA	36508620	36513342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36508679_36508814
91958	chr9	-	2036	10	NIC	ENSMUSG00000039048.16	novel	2289	11	NA	NA	5	-15	combination_of_known_splicesites	FALSE	canonical	1	3	junction_8	66.2654594122089	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGCAG	NA	False	NA	NA	False	NA	NA	NA	35122227	35115518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35121240_35121462_35122102
91960	chr2	+	2286	1	Intergenic	novelGene_2680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAAATTAAACATAAATCA	NA	False	NA	NA	False	NA	NA	NA	109142678	109144964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_109142700_109145000
91962	chr19	-	2346	4	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22705271	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773_22701464_22704295_22704734_22704777
91963	chr14	-	1577	10	NNC	ENSMUSG00000021773.12	novel	2314	7	NA	NA	1942	14335	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	26	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGGTCCCCGCCGCGGCC	NA	False	NA	NA	False	NA	NA	NA	21895936	21881587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_21881734_21881916_21881978_21882951_21883020_21883867_21883918_21887810_21887963_21888056_21888111_21888457_21888687_21890602_21890636_21893945_21894005_21895211
91964	chr9	-	1737	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	4	53	-4	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	21370	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
91965	chr14	-	4873	21	NIC	ENSMUSG00000033166.12	novel	5150	21	NA	NA	153	-21	combination_of_known_junctions	FALSE	canonical	3	37	junction_20	95.0275091749752	250	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAGAAAAAAAGAAAAAA	3110	False	NA	NA	False	NA	NA	NA	99336623	99312662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020_99335215_99336118_99336277_99336554
91966	chr19	+	7706	15	Antisense	novelGene_ENSMUSG00002075994.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	53	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	33532562	33577295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_33533880_33534506_33534576_33535661_33535737_33536911_33537056_33556761_33556899_33557864_33557975_33559452_33559652_33560446_33560563_33562264_33562375_33565598_33565744_33567936_33568043_33568160_33568210_33568762_33568836_33572185_33572826_33572879
91967	chr7	-	828	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_3	30199.1782338527	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109263	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107708_45107958_45108085_45108507_45108655_45109048
91968	chr13	-	803	7	NIC	ENSMUSG00000069089.9	novel	1159	11	NA	NA	49	-17	combination_of_known_splicesites	FALSE	canonical	2	3	junction_5	275.829305106538	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTTACAATAAATATTT	NA	False	NA	NA	False	NA	NA	NA	100867359	100839834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100866965_100867026_100867281
91969	chr9	-	1334	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12240	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGGAAGGAATAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	64085801	64082104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64082581_64082863_64083007_64083375_64083498_64084220_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
91970	chr17	+	3658	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	0	2	intron_retention	FALSE	non_canonical	0	0	junction_2	716.21547735301	1	65	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACAACCGTGTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	35460780	35472654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462156_35462325_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
91971	chr3	+	4614	9	Genic_Genomic	ENSMUSG00000086189.2	novel	4580	4	NA	NA	-9986	7534	multi-exon	FALSE	non_canonical	0	0	junction_1	0	150	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGCCCCACCCATTAACGA	NA	False	NA	NA	False	NA	NA	NA	30730247	30754049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743454_30743996_30744170_30745309_30745453_30749638_30749780_30753847
91972	chr4	+	2325	12	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	10	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTATGAAGGCGGCCTGG	399	False	NA	NA	False	NA	NA	NA	137469198	137523649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882_137486043_137523551
91973	chr6	-	2941	6	FSM	ENSMUSG00000040649.16	ENSMUST00000068242.9	4725	6	334	1450	268	-291	multi-exon	FALSE	canonical	3	62	junction_5	43.1907397482377	183	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGTCTGATCATGCTTA	9574	False	NA	NA	False	NA	NA	NA	122463130	122431509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122463049
91974	chr1	-	2934	8	ISM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	58993	334	-4046	-334	3prime_fragment	FALSE	canonical	3	610	junction_6	18.5075825608019	265	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTTAAAGTAAATGTATT	NA	False	NA	NA	False	NA	NA	NA	80259204	80242973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099
91975	chr13	+	1322	6	Antisense	novelGene_ENSMUSG00000114814.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAACTTGCAGAAAGGCA	9473	False	NA	NA	False	NA	NA	NA	66529124	66892941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66529445_66882870_66883243_66888841_66889042_66889242_66889329_66890828_66891045_66892813
91976	chr4	+	3500	23	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-16	2621	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	459.546182896644	84	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCACGTGGCCCGCGGT	NA	False	NA	NA	False	NA	NA	NA	155954055	155976181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076_155973624_155973888_155974051_155974120_155974645_155974957_155975123_155975200_155975362_155975509_155975696_155975813_155975873_155976087
91977	chr4	+	4576	3	Antisense	novelGene_ENSMUSG00000057236.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	79	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCACTCCGCGCGCGCGG	5448	False	NA	NA	False	NA	NA	NA	129218188	129229100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129222526_129228288_129228438_129229010
91978	chr2	+	5427	5	NIC	ENSMUSG00000078877.12	novel	2505	4	NA	NA	24	2787	combination_of_known_junctions	FALSE	canonical	3	47	junction_2	16.6038399173203	1149	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	176490428	176505803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487_176499549_176500702
91980	chr4	+	2747	8	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	10	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	170.998627515676	151	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTTTGGTGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	132857860	132927063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132925361
91981	chr6	+	1798	10	Antisense	novelGene_ENSMUSG00000030357.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGGCGCTGCCCACCTCG	7176	False	NA	NA	False	NA	NA	NA	128407076	128415570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_128407674_128409559_128409624_128410067_128410254_128410487_128410575_128410667_128410765_128411271_128411425_128411714_128411832_128412669_128412822_128413534_128413676_128415366
91983	chr2	-	4693	5	FSM	ENSMUSG00000078903.11	ENSMUST00000109058.9	1854	5	59	-2898	18	-951	multi-exon	FALSE	canonical	3	35	junction_1	82.2936814099357	149	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTAATTTTTTTTAAAAA	NA	False	NA	NA	False	NA	NA	NA	175048651	175033808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
91984	chr9	+	503	2	Genic_Genomic	ENSMUSG00000066443.6	novel	481	1	NA	NA	-34	45	multi-exon	FALSE	canonical	0	0	junction_1	0	15	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAATGAAT	NA	False	NA	NA	False	NA	NA	NA	88272855	88273415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_88273115_88273171
91985	chr2	-	3700	6	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5484	4639	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	497.394813000699	36	23	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACTCTCTCATATCTGT	NA	False	NA	NA	False	NA	NA	NA	177275487	177256357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177256943_177259166_177261448_177261531_177262087_177263226_177263288_177263479_177263607_177275396
91986	chr2	+	8835	10	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-124	-6	intron_retention	FALSE	canonical	0	0	junction_7	987.514625614461	29	130	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTAGTGTCTGACTCCTC	NA	False	NA	NA	False	NA	NA	NA	162901144	162926602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162919810_162921513_162922092_162922334_162922743_162924469_162924620_162925085
91987	chr3	+	1922	9	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1443.19212165255	3	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89987000	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987155_89993821_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90007301_90007364
91988	chr11	+	4128	25	NNC	ENSMUSG00000020850.15	novel	7442	42	NA	NA	2211	-587	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	142.931018472782	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGCTACCTACCCTCGCA	NA	False	NA	NA	False	NA	NA	NA	75385282	75399686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75385381_75385499_75385693_75386059_75386248_75386407_75386647_75386855_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392758_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397632_75399099_75399241_75399346_75399475_75399615
91990	chr4	-	568	2	FSM	ENSMUSG00000038578.16	ENSMUST00000136562.2	598	2	28	2	28	-2	multi-exon	FALSE	canonical	3	85	junction_1	0	31	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGATTTGCATTTACC	3155	False	NA	NA	False	NA	NA	NA	59332994	59329211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_59329722_59332936
91991	chr17	-	592	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4798	3	1263	-3	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45879399	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
91992	chr7	-	5243	16	NNC	ENSMUSG00000030986.14	novel	2955	12	NA	NA	-88	11587	intron_retention	FALSE	non_canonical	0	0	junction_1	182.269324535608	1	123	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGTCACACTGCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	133361646	133311083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_133311256_133315914_133315992_133316628_133316707_133318547_133318679_133319325_133319516_133320832_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128
91993	chrUn_JH584304v1	-	3840	4	Intergenic	novelGene_4618	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_2	279.385436668095	9	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATGGCCAACAATCTTC	NA	False	NA	NA	False	NA	NA	NA	59900	52198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55702_58563_58836_59591
91995	chr4	-	4890	8	FSM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	-291	-3295	-30	-945	multi-exon	FALSE	canonical	3	29	junction_2	409.46231542732	1350	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATTACAATGTTGCAGCA	NA	False	NA	NA	False	NA	NA	NA	148711506	148697886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148701302_148702022_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
91996	chrX	-	6753	21	NNC	ENSMUSG00000031386.15	novel	8262	26	NA	NA	1858	-7	at_least_one_novel_splicesite	FALSE	non_canonical	2	6	junction_1	124.596709426854	2	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAATAACCATCTGGTAT	NA	False	NA	NA	False	NA	NA	NA	72999177	72986409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72987297_72987351_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991124_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060
91997	chr13	-	2726	16	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2515.83804990173	5	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	4751	False	NA	NA	False	NA	NA	NA	58550330	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58539608_58539667_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
92000	chr5	-	6383	15	FSM	ENSMUSG00000042121.17	ENSMUST00000159592.8	8436	15	127	1926	0	745	multi-exon	FALSE	canonical	3	321	junction_13	43.65589003438	236	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGTCTGAACCATGTG	NA	False	NA	NA	False	NA	NA	NA	114131828	114077080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114127706_114127748_114131724
92001	chr9	-	6724	35	Antisense	novelGene_ENSMUSG00000035024.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACGTTTTGGCGGACCAG	NA	False	NA	NA	False	NA	NA	NA	27006594	26942019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_26942126_26948279_26948434_26952686_26952849_26955788_26955974_26956343_26956516_26956821_26956884_26957198_26957287_26959448_26959583_26961590_26961664_26962655_26962782_26962912_26963168_26963619_26963675_26963887_26963960_26966765_26966839_26967336_26967474_26969155_26969376_26974557_26974750_26975063_26975161_26975267_26975385_26978234_26978346_26980962_26981079_26981170_26981276_26983017_26983258_26984016_26985758_26993698_26993837_26994122_26994259_26994478_26994674_26997232_26997346_26998676_26998859_26999272_26999491_26999726_26999862_27000594_27000674_27005696_27005767_27005854_27005916_27005990
92002	chrX	+	6087	2	Intergenic	novelGene_4043	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	604	43	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	122307162	122313899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_122313040_122313689
92003	chr17	-	5362	18	FSM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	-9	11	-9	-10	multi-exon	FALSE	canonical	3	147	junction_3	39.8587471351445	417	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGCTGCCGCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	43187289	43103852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136823_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
92004	chr19	-	1928	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	-231	-700	-141	-3	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATATATTATTGTTTGATC	NA	False	NA	NA	False	NA	NA	NA	10502687	10479007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
92006	chr19	-	3855	3	FSM	ENSMUSG00000071660.11	ENSMUST00000088092.6	1585	3	-54	-2216	-15	-5	multi-exon	FALSE	canonical	3	241	junction_2	7	571	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCACAAATGCATCTTAG	1870	False	NA	NA	False	NA	NA	NA	8796712	8786443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_8789203_8793217_8793401_8795799
92007	chr19	+	4159	12	Genic_Genomic	ENSMUSG00000118243.2	novel	833	1	NA	NA	-11517	-617	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGACCAACACGGAAGCT	5651	False	NA	NA	False	NA	NA	NA	5333706	5345439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_5333781_5333887_5336685_5336837_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338444_5341333_5341450_5343106_5343348_5344326_5344405_5345068_5345115_5345288
92008	chr16	+	2383	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-471	1909	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	19.5	3	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCTATCCTGGCTCCGCG	2393	False	NA	-98	True	NA	NA	NA	93811828	93815004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_93811971_93812713_93814317_93814366
92009	chr11	+	4137	3	NNC	ENSMUSG00000017776.16	novel	3642	3	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	112.5	305	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTTACTATGTTGAATGT	2140	False	NA	NA	False	NA	NA	NA	75570126	75597731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75570188_75583022_75583559_75594191
92010	chr12	-	1082	6	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3168.76017394816	1	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638718	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636691_111637858_111638014_111638199_111638408_111638663
92011	chr1	-	3908	16	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_7	501.577759563648	88	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	128345096	128291443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128303555_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
92012	chr10	-	4465	15	FSM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	-14	3315	-14	-3315	multi-exon	FALSE	canonical	3	515	junction_9	90.891306470073	300	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTACAACCTCTTCTTTC	212	False	NA	NA	False	NA	NA	NA	119075974	119038474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355_119052613_119053845_119053970_119055494_119055650_119063307_119063452_119075545
92014	chrX	-	3549	27	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.961538461538462	5	21	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTCGATCGTGCAAAAAG	NA	False	NA	NA	False	NA	NA	NA	20548865	20524692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20524764_20533710_20533893_20534686_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
92015	chr3	-	1539	7	NIC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	0	-2	intron_retention	FALSE	canonical	3	739	junction_1	41.4286535302963	1540	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAAAGAATCCCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	89121214	89116389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89116729_89116811_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
92016	chr12	+	2820	3	ISM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	79	149	79	-149	intron_retention	FALSE	canonical	3	316	junction_2	15	4	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCCTTCCTTCTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	28725308	28732025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_28725372_28727776_28727897_28729388
92017	chr2	-	7976	34	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	191	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGGGCCCAGCGGCGCG	NA	False	NA	NA	False	NA	NA	NA	52012068	51962840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51962871_51963141_51963264_51964256_51964331_51966085_51966186_51966988_51967120_51967203_51967307_51968353_51968533_51971237_51971329_51972674_51972814_51975036_51975191_51978661_51978776_51980183_51980295_51982051_51982114_51982288_51982390_51983514_51983596_51984595_51984676_51985835_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993743_51995442_51995650_51996912_51997013_51997649_51997764_51998446_51998603_51999202_51999289_51999367_51999415_51999921_52003011_52006257_52006402_52006675_52006758_52006846_52006962_52009027_52009181_52010269_52010379_52011001
92018	chrM	-	733	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGGTATAACTTAGTCA	5379	False	NA	NA	False	NA	NA	NA	1023	290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_300_1000
92019	chr2	+	1921	10	NIC	ENSMUSG00000002718.15	novel	3087	24	NA	NA	-4	-7	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	283.902478474477	23	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAATGGTGGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	166747955	166788302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_166748098_166757089_166757185_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
92020	chr19	+	4254	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	4	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1467	False	NA	NA	False	NA	NA	NA	44282512	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44292348_44293140
92021	chr4	-	4507	2	Intergenic	novelGene_2010	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCTGATCTTGCTCTTCA	NA	False	NA	NA	False	NA	NA	NA	143715103	143710526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_143710653_143710722
92022	chr17	+	971	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	230	1	199	-1	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	51	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547819	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
92023	chr4	+	4702	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-27	252919	multi-exon	FALSE	non_canonical	0	0	junction_1	73.2731874562585	581	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTTCCAGGTTCATGGA	4083	False	NA	NA	False	NA	NA	NA	147314713	147671110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147393100_147393224_147409183_147409335_147413438_147413566_147415724_147419795_147671058
92024	chr4	-	1245	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-171	-72	171	mono-exon	FALSE	NA	NA	NA	NA	NA	10	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGCACCCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
92025	chr6	-	3680	1	FSM	ENSMUSG00000057666.19	ENSMUST00000192506.2	3289	1	-602	211	0	-72	mono-exon	FALSE	NA	NA	NA	NA	NA	20	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAATAACAGGAGGGGCC	NA	False	NA	NA	False	NA	NA	NA	125142568	125138888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125138900_125142600
92026	chr10	-	2452	14	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-7	1	intron_retention	FALSE	canonical	3	1936	junction_8	242.484136002786	26	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899675	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
92027	chr4	+	3515	23	NIC	ENSMUSG00000028423.16	novel	4594	24	NA	NA	83	-6	combination_of_known_splicesites	FALSE	canonical	2	9	junction_1	208.456156081475	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTACTTGTATTTTGTTT	-3	True	NA	NA	False	NA	NA	NA	40970988	41025987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_40971060_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
92028	chr3	+	3069	27	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-3	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	163.286258965241	1	54	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTTGCAGTCGTGGTG	NA	False	NA	NA	False	NA	NA	NA	54600240	54636173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625050_54625654_54625808_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
92030	chr18	+	2984	11	Antisense	novelGene_ENSMUSG00000094306.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGCCGAGCCCGCGATCA	NA	False	NA	NA	False	NA	NA	NA	14758685	14815794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_14760368_14766598_14766732_14769550_14769671_14773308_14773418_14774011_14774180_14784075_14784301_14788082_14788238_14803365_14803448_14811207_14811369_14812442_14812521_14815723
92031	chr2	+	4147	4	FSM	ENSMUSG00000094786.2	ENSMUST00000108947.3	1209	4	-101	-2837	-1	2545	multi-exon	FALSE	canonical	3	122	junction_1	52.0405824546788	3	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	177190006	177204101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_177190111_177198701_177198829_177199035_177199097_177200246
92032	chr2	-	589	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-73	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	450	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	28824694	28823430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28823701_28824375
92033	chr6	-	2533	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	264.786944604635	4	45	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3038	False	NA	NA	False	NA	NA	NA	71885744	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875431_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
92034	chr17	-	4837	4	Antisense	novelGene_ENSMUSG00000092981.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	673	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGAGCAGTTCTGGATTT	NA	False	NA	-3	True	NA	NA	NA	24043711	24037946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_24040663_24041384_24042877_24042987_24043089_24043183
92035	chr3	-	5217	13	NNC	ENSMUSG00000106218.2	novel	1896	2	NA	NA	22429	9768	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	107	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTGCACCAGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	88784879	88742563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88744823_88753692_88753886_88761907_88762103_88762932_88763008_88763121_88763166_88763720_88763774_88764431_88764534_88765691_88765812_88766193_88766363_88770722_88770919_88776055_88776158_88777107_88777151_88783213
92036	chr8	+	4131	3	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-24	-177	multi-exon	FALSE	non_canonical	0	0	junction_2	610	3	70	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	19834737	20045711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030768_20041926
92037	chr7	+	3952	8	NNC	ENSMUSG00000059851.16	novel	2774	9	NA	NA	-1	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	242.097804489788	39	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAGGAGGTTTTTTTTTT	620	False	NA	NA	False	NA	NA	NA	4743150	4750508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743633_4743756_4744981_4745120_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
92038	chr16	+	6159	1	FSM	ENSMUSG00000087935.3	ENSMUST00000157310.3	178	1	-2976	-3005	-2976	3005	mono-exon	FALSE	NA	NA	NA	NA	NA	43	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTTATATAGGTGGTC	6075	False	NA	NA	False	NA	NA	NA	22926529	22932688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926500_22932700
92039	chr13	+	4928	12	Fusion	ENSMUSG00000114684.3_ENSMUSG00000095909.3	novel	1525	4	NA	NA	-27	393	intron_retention	TRUE	non_canonical	0	0	junction_4	43.9774547799849	54	53	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTGTCTGAGATTCCT	NA	False	NA	NA	False	NA	NA	NA	66261266	66666061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66326860_66356853_66357272_66647553_66647795_66647949_66648116_66654710_66654789_66660218_66660361_66661815_66661988_66663166_66663221_66664310
92040	chr5	+	5595	7	NIC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-27	1	intron_retention	FALSE	canonical	3	3017	junction_4	248.055605325365	6	117	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTCTCGCTGTGTGGTCT	729	False	NA	NA	False	NA	NA	NA	77099596	77115353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77114253_77114494
92041	chr2	+	3223	12	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	245	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	5.52679423766206	8	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCATGCGTGTCGGTGCTG	3017	False	NA	NA	False	NA	NA	NA	30024077	30042017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711_30040804_30041731
92042	chr15	+	6892	14	Antisense	novelGene_ENSMUSG00000036698.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	66	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTATGCGCAGGAAAAGGAA	1713	False	NA	NA	False	NA	NA	NA	72973798	72998936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_72978866_72979013_72979213_72980219_72980321_72983533_72983669_72985554_72985754_72988151_72988241_72991184_72991348_72992913_72993095_72995165_72995306_72995725_72995849_72995978_72996098_72997011_72997159_72998293_72998387_72998800
92043	chr15	+	622	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	454	-74	-454	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGACTGTGGATGGCCCCT	88	False	NA	NA	False	NA	NA	NA	12574900	12575522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12575500
92044	chr4	-	1265	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-191	-72	191	mono-exon	FALSE	NA	NA	NA	NA	NA	36	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
92045	chrX	+	872	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	-23	-48	-23	48	mono-exon	FALSE	NA	NA	NA	NA	NA	48523	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAAATTACATCAAATA	NA	False	NA	NA	False	NA	NA	NA	165637183	165638055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_165637200_165638100
92046	chr6	+	1969	8	NNC	ENSMUSG00000004264.18	novel	2373	8	NA	NA	9	0	intron_retention	FALSE	non_canonical	0	0	junction_7	952.068703574763	42	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	124689307	124693913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691923_124692022_124692127_124692544_124692623_124692916_124692999_124693568
92047	chr17	-	5505	10	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-31896	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	32.0312347560939	88	109	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	6138	False	NA	NA	False	NA	NA	NA	22213341	22145940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22147037_22147453_22148471_22149346_22149474_22151973_22152030_22172868_22172962_22173485_22173571_22181236_22181797_22207007_22207081_22209757_22209886_22211071
92048	chr11	-	2574	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	135	0	114	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	271	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4605	False	NA	NA	False	NA	NA	NA	115599288	115534870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
92049	chrM	-	2237	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	-8	True	NA	NA	False	NA	NA	NA	3330	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_3300
92051	chr9	+	1098	6	Antisense	novelGene_ENSMUSG00000037742.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.8	1	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTTTCACAACACCTAAAA	NA	False	NA	NA	False	NA	NA	NA	78386410	78387956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386471_78386555_78386816_78386904_78387057_78387133_78387456_78387561_78387710_78387800
92052	chr2	+	2782	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	437.372076535909	7	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGGATGCCCCTAGGTG	653	False	NA	NA	False	NA	NA	NA	26279359	26287133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285200_26285791
92053	chr11	+	2343	1	Genic_Genomic	ENSMUSG00000020691.14	novel	NA	NA	NA	NA	1227	738	mono-exon	FALSE	NA	NA	NA	NA	NA	146	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAATTTTCTATATCTTTT	NA	False	NA	NA	False	NA	NA	NA	105029615	105031958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_105029600_105032000
92054	chr8	+	6750	24	Fusion	ENSMUSG00000031629.15_ENSMUSG00000110270.2	novel	3010	14	NA	NA	-1	11232	intron_retention	FALSE	non_canonical	0	0	junction_14	149.758305594441	740	49	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGAAACCCGCGCGAGGG	NA	False	NA	NA	False	NA	NA	NA	47005094	47070230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289_47034685_47039376_47039486_47039640_47039732_47043249_47043337_47045625_47046744_47052756_47052902_47058119_47058249_47060837_47060937_47063475_47063665_47065407_47065481_47070167
92055	chr16	-	564	1	Intergenic	novelGene_3745	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
92056	chr17	-	8313	18	NNC	ENSMUSG00000092074.3	novel	3321	5	NA	NA	2457	35875	intron_retention	FALSE	non_canonical	0	0	junction_1	1268	19	71	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGACTGCGCGGTCACGTGC	NA	False	NA	NA	False	NA	NA	NA	6365236	6320739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6320866_6330870_6330976_6337199_6337255_6339258_6339347_6340829_6340953_6345197_6345309_6345995_6346078_6347502_6347602_6348125_6348256_6348421_6348516_6349637_6349693_6351163_6351269_6351675_6351727_6353493_6353579_6354520_6354610_6354850_6354918_6355304_6362108_6365191
92057	chr17	-	7176	9	NNC	ENSMUSG00000116868.2	novel	985	8	NA	NA	1456	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	19.2532464794902	304	48	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTTGCATTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	6848646	6803303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6803476_6809624_6809760_6812795_6812921_6815627_6815707_6817281_6817358_6819117_6819159_6831826_6831892_6841677_6841897_6842382
92058	chr17	-	1577	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	118	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149124	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145522_36146519_36146932_36147054_36147166_36147519_36147629_36148888
92059	chr1	+	6440	27	NNC	ENSMUSG00000042207.18	novel	8714	27	NA	NA	183	1704	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	254.096639235953	520	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACCACCGAGTTCCC	6934	False	NA	NA	False	NA	NA	NA	134488127	134560964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134488281_134512891_134512970_134515659_134515783_134516514_134516686_134521066_134521202_134523537_134523635_134525320_134525435_134526797_134526957_134528371_134528492_134530187_134530347_134532179_134532362_134533450_134533614_134535425_134535546_134536602_134536798_134540925_134541108_134541624_134541750_134543655_134543807_134543926_134544042_134545429_134545786_134547297_134547437_134548580_134548761_134549672_134549832_134552448_134552935_134555002_134555115_134556335_134556491_134558170_134558492_134558974
92060	chr6	-	3196	24	Intergenic	novelGene_4166	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	161	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCGCGAGGTGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	49446435	49372472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_49372511_49374993_49375040_49375127_49375181_49381697_49381797_49383681_49383757_49385984_49386144_49394120_49394480_49396086_49396261_49398614_49398731_49400306_49400468_49402627_49402751_49414281_49414464_49414903_49415024_49415382_49415501_49416030_49416165_49417790_49417893_49419164_49419245_49422100_49422226_49423025_49423152_49423322_49423412_49424177_49424323_49434583_49434712_49442401_49442471_49446060
92061	chr9	+	2215	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	189	28	-16	-28	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	31595	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCAATAAACAGCAGCTGAA	1853	False	NA	NA	False	NA	NA	NA	59563839	59586630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
92062	chr13	+	2655	11	Genic_Genomic	ENSMUSG00000113723.3	novel	902	4	NA	NA	-46834	336	multi-exon	FALSE	non_canonical	0	0	junction_3	59.6010905940487	2	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTTACTGCTTGTC	NA	False	NA	NA	False	NA	NA	NA	66045015	66096732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_66045092_66052247_66052375_66052573_66052635_66076322_66076466_66078729_66078808_66085374_66085456_66090896_66091041_66091124_66091188_66092580_66092671_66093849_66093904_66094994
92063	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	133	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
92064	chrM	-	844	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	195	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTCTCCTTAAATTTTAA	5379	False	NA	NA	False	NA	NA	NA	1023	179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1000
92065	chr16	+	327	1	FSM	ENSMUSG00002076173.1	ENSMUST00020183322.1	57	1	-192	-78	-192	78	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTTCTGGGTCGGGGTT	936	False	NA	NA	False	NA	NA	NA	10961796	10962123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_10961800_10962100
92066	chrX	-	665	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	407	-73	-407	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGCTGCCCAGAACATC	NA	False	NA	NA	False	NA	NA	NA	79238531	79237866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237900_79238500
92067	chr1	-	3547	15	ISM	ENSMUSG00000040225.16	ENSMUST00000182393.8	6367	21	202	7710	202	4240	5prime_fragment	FALSE	canonical	3	85	junction_10	20.9573181412477	3	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTATGGCATGGTAAATT	NA	False	NA	NA	False	NA	NA	NA	162532559	162507066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937
92068	chr17	-	2498	1	FSM	ENSMUSG00000093009.3	ENSMUST00000175268.3	66	1	-1455	-977	-1455	977	mono-exon	FALSE	NA	NA	NA	NA	NA	282	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCGGCCTCCCCTCCCCT	6006	False	NA	NA	False	NA	NA	NA	35171448	35168950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_35169000_35171400
92069	chr16	-	2597	1	Intergenic	novelGene_3867	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCTTTGATCCTATGAT	NA	False	NA	NA	False	NA	NA	NA	93695608	93693011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_93693000_93695600
92070	chr6	-	4052	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	223	70	-30	-70	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	13	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTAGTGTGCCCCAAATG	NA	False	NA	NA	False	NA	NA	NA	49191668	49062226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
92071	chr6	-	4946	15	NNC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	-225	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	32.0455670467374	13	135	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTCATTTGCCCTCATTT	9439	False	NA	NA	False	NA	NA	NA	38331763	38282237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38283279_38283677_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38310124_38313346_38313600_38317154_38317291_38330849_38331470_38331606
92072	chr11	+	4104	24	NNC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	7	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	193.421281301959	373	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGAAATGAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	6241647	6306570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6241694_6246951_6247200_6263787_6263980_6266769_6266834_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
92073	chr13	-	7289	9	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-28	22448	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	84.0472337438895	157	142	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCACATGTTTCTTTGGC	NA	False	NA	NA	False	NA	NA	NA	66846335	66795543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66796708_66802122_66802433_66812311_66814295_66815588_66818073_66818324_66819249_66819332_66819455_66821007_66821069_66821267_66821395_66846221
92074	chrM	+	584	2	Genic_Genomic	ENSMUSG00000064357.1	novel	681	1	NA	NA	-158	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-8	True	NA	NA	False	NA	NA	NA	7768	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8136_8390
92075	chr16	-	1386	7	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-1805	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	449.096283910502	22	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTCAAGACTGGTATTTG	8675	False	NA	NA	False	NA	NA	NA	33787373	33776968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782267_33782512_33782611_33784141_33784296_33787195
92076	chr13	+	2998	6	Fusion	ENSMUSG00000063905.3_ENSMUSG00000113008.2	novel	327	2	NA	NA	-8741	-233	multi-exon	FALSE	non_canonical	0	0	junction_4	13.5499077487635	8	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651750	65662559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_65651859_65658192_65658320_65658519_65658581_65659713_65661130_65661194_65661396_65661474
92077	chr4	+	1128	1	ISM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	27066	236	22941	-236	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATCCTTAAAAGAGTATC	5947	False	NA	NA	False	NA	NA	NA	145264394	145265522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_145264400_145265500
92078	chr11	+	5830	36	NNC	ENSMUSG00000020850.15	novel	7442	42	NA	NA	-1553	-579	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	177.481128631774	1	232	18	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACCCTCGCACTACGAGA	NA	False	NA	NA	False	NA	NA	NA	75381518	75399694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75381593_75381672_75381779_75382268_75382460_75382584_75382705_75382787_75382978_75383088_75383209_75383322_75383458_75383804_75383935_75384176_75384374_75384639_75384847_75384963_75385128_75385253_75385381_75385499_75385693_75386059_75386248_75386407_75386622_75386827_75387003_75387166_75387378_75387788_75387906_75390624_75390873_75390974_75391155_75391337_75391474_75391591_75391762_75391894_75392025_75392143_75392291_75392596_75392754_75393323_75393516_75394096_75394335_75394442_75394572_75395303_75395418_75395493_75395668_75395920_75396115_75397155_75397396_75397489_75397636_75399106_75399241_75399346_75399487_75399592
92080	chr13	-	4009	3	NIC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	1157	intron_retention	FALSE	canonical	3	157	junction_2	3	110	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGTCAATTTGAATATGC	NA	False	NA	NA	False	NA	NA	NA	66950624	66938976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_66942763_66942962_66943090_66950528
92081	chr3	+	4116	20	FSM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	8	1966	8	1801	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	365	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAAAAACAGTTGTGTG	NA	False	NA	-57	True	NA	NA	NA	51323444	51381440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
92082	chr2	-	5190	11	NIC	ENSMUSG00000093752.2	novel	5288	12	NA	NA	-230	-106	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	203.314264133139	3	142	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATATATGACACACTGTT	NA	False	NA	NA	False	NA	NA	NA	168072514	168023011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_168027093_168029486_168029580_168031201_168031315_168052350_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061956_168062034_168065040_168065075_168069322_168069423_168072308
92083	chr17	+	2645	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-67	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	95.1955224787385	1281	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17284307	17309885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308544_17308627
92084	chr1	-	10111	45	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	0	-84	intron_retention	FALSE	non_canonical	0	0	junction_13	553.122473846778	157	123	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGTTGGTGATTATTTT	NA	False	NA	NA	False	NA	NA	NA	71692331	71624768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71643750_71644009_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689777_71689859_71690679_71690809_71691990
92085	chr9	-	3495	5	ISM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	-332	15	-330	-15	intron_retention	FALSE	canonical	3	643	junction_4	110.637640520756	65	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATAATAATTATGGAATT	NA	False	NA	NA	False	NA	NA	NA	4309801	4294808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693
92086	chr2	-	6410	25	FSM	ENSMUSG00000027194.17	ENSMUST00000111238.8	4590	25	-1819	-1	-1819	1	multi-exon	FALSE	canonical	3	116	junction_1	40.2833497103814	181	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTGGTGTAGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	94238853	94131110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
92087	chr4	+	2287	5	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14209	775	multi-exon	FALSE	non_canonical	0	0	junction_2	39.6445141223852	81	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	145159100	145178233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145173287_145173342_145176036_145176243_145176326
92088	chr17	-	3157	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-4	-1032	combination_of_known_junctions	FALSE	canonical	3	43	junction_16	200.408917902872	1315	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8733	False	NA	NA	False	NA	NA	NA	24470325	24442203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
92089	chr9	+	808	8	ISM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	7742	666	-2656	-666	3prime_fragment	FALSE	canonical	3	619	junction_7	106.961751699056	932	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGAGGGAAGAGGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	108547038	108561174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
92091	chr5	-	3531	13	NNC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	13	0	intron_retention	FALSE	canonical	0	0	junction_12	111.601846858474	5	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	NA	False	NA	NA	False	NA	NA	NA	123060157	123008730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123060038
92092	chr4	+	5947	20	Antisense	novelGene_ENSMUSG00000104566.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	27	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGCCGCCGCTGCTCCCG	3507	False	NA	NA	False	NA	NA	NA	133407450	133479805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133409367_133411745_133411876_133412183_133413077_133413539_133413637_133413714_133413865_133413943_133414102_133414514_133414687_133414847_133414984_133416367_133416571_133418378_133418598_133420114_133420222_133420317_133420457_133421061_133421381_133421972_133422146_133422884_133422968_133423221_133423467_133446846_133446964_133447859_133448313_133450151_133450363_133479779
92093	chr13	-	2416	6	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113623.2	novel	2310	4	NA	NA	10	-38	multi-exon	FALSE	canonical	2	5	junction_3	57.3410847473258	1	37	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGTAAGAAACCTCATAAA	NA	False	NA	NA	False	NA	NA	NA	62564847	62516179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519709_62555228_62555290_62555482_62555610_62564751
92094	chr2	-	3702	25	NNC	ENSMUSG00000061136.17	novel	7374	26	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	180.602387088937	1	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGTCTTTATTTCTACA	NA	False	NA	NA	False	NA	NA	NA	53081214	53028248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53066374_53066429_53067364_53067446_53079980_53080113_53081156
92095	chr1	+	3459	22	NIC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	26	-253	combination_of_known_splicesites	FALSE	canonical	1	19	junction_11	470.582935644428	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGATTTTCTTTTTTAT	3173	False	NA	NA	False	NA	NA	NA	180396519	180428564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
92096	chr9	+	1029	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	810	-1	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	29	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
92097	chr13	-	4201	3	Genic_Genomic	ENSMUSG00000114434.2	novel	1508	1	NA	NA	-12562	-491	multi-exon	FALSE	canonical	3	10	junction_2	5	71	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAACCGTGTGAATGTAA	NA	False	NA	NA	False	NA	NA	NA	66711846	66698267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66700522_66700722_66702494_66711670
92098	chr11	-	1862	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	4	1	4	-1	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	56	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGGTCTGTGCAGCT	NA	False	NA	NA	False	NA	NA	NA	120472446	120468930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
92099	chr4	+	4097	7	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-36	65	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	190.233190234161	469	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTCTCATAAAGTATTT	NA	False	NA	NA	False	NA	NA	NA	146093357	146135390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535_146132094_146132178_146132850_146133018
92100	chr13	+	8510	3	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24306	6036	intron_retention	FALSE	canonical	3	24	junction_2	9	63	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	66901198	66933242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66901313_66924718_66927256_66927383
92101	chr13	+	6874	2	NNC	ENSMUSG00000045767.10	novel	4652	2	NA	NA	3309	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	20	126	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCATCACTTTAAAACCA	NA	False	NA	NA	False	NA	NA	NA	55844245	55851293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55848027_55848200
92102	chr2	+	6030	5	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	-7	34234	intron_retention	FALSE	non_canonical	0	0	junction_3	38.9358446678636	1421	177	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGGTATAAGGTATGGATT	NA	False	NA	NA	False	NA	NA	NA	177156518	177204156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177156642_177165078_177165206_177165410_177170699_177171046_177171103_177203720
92103	chr2	+	2461	5	Intergenic	novelGene_2822	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_3	17.0440605490593	18	46	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAATTTATATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	172419628	172468689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_172419745_172420215_172420303_172430932_172431176_172449327_172449895_172467241
92104	chr15	-	2418	7	NNC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	11213.5175817205	24	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3571	False	NA	NA	False	NA	NA	NA	79967554	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962628_79962907_79963010_79963890_79964679_79965218_79965985_79966590_79966784_79967524
92105	chr18	+	988	4	Antisense	novelGene_ENSMUSG00002076630.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	7.93025150224688	149	3	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTTTGTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	20895474	20997370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_20895821_20951304_20951388_20963808_20964032_20997034
92106	chr6	-	3508	12	ISM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	1930	19	60	0	3prime_fragment	FALSE	canonical	3	372	junction_9	204.603870446414	3	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGAAAGTTGGCCTCCAT	NA	False	NA	NA	False	NA	NA	NA	122312044	122294708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931
92108	chr5	-	2469	7	NNC	ENSMUSG00000025747.13	novel	3163	7	NA	NA	6	-588	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	689.256221509018	16	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTAGCCCTGAGCTATTCT	NA	False	NA	NA	False	NA	NA	NA	30278606	30264412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278455
92109	chr18	+	3588	13	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	838.500679122497	1	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGAGAGGCTGGTTGTC	479	False	NA	NA	False	NA	NA	NA	61688395	61723131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701400_61701437_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496_61721414_61721593_61722025_61722285
92110	chr16	+	858	1	Intergenic	novelGene_3623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTTTTTTTTCTTTCA	2418	False	NA	NA	False	NA	NA	NA	22941807	22942665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_22941800_22942700
92111	chr17	+	826	4	Antisense	novelGene_ENSMUSG00000063576.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	134	2	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTTCAATCTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	46985483	46987699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_46986077_46987239_46987323_46987430_46987506_46987624
92112	chr13	-	2521	6	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113623.2_ENSMUSG00000113450.2	novel	2310	4	NA	NA	0	-5	multi-exon	FALSE	canonical	2	10	junction_3	53.8144961882948	2	76	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGCTTGTGTGTGGATC	9512	False	NA	NA	False	NA	NA	NA	62614646	62516146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62555228_62555290_62555482_62555610_62614520
92113	chr19	-	1664	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	43	6	-39	2	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	2546	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTGCTGTCTGGCCCA	NA	False	NA	NA	False	NA	NA	NA	7183638	7175572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
92114	chr6	-	3425	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-12	0	intron_retention	FALSE	canonical	3	774	junction_15	86.7203756548541	17	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3068	False	NA	NA	False	NA	NA	NA	71885714	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
92115	chr8	-	2557	11	NNC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	-27	1053	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	129.85010589137	4	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGAGAAAGGACACTTCAT	567	False	NA	NA	False	NA	NA	NA	71725149	71702715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71704189_71705714_71705819_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
92116	chr14	-	2455	11	NIC	ENSMUSG00000000958.11	novel	2126	11	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_10	51.7787601242054	3	88	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	54655296	54606898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54654944
92117	chr17	-	2782	22	NNC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	173.311811850734	8	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTGTGGAGACAGCTT	NA	False	NA	NA	False	NA	NA	NA	24746880	24727827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737347_24737468_24737715_24737774_24738084_24738221_24746776
92118	chr17	-	4147	6	Antisense	novelGene_ENSMUSG00000092981.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	162	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTCTGTCTGAGAGG	NA	False	NA	-3	True	NA	NA	NA	24043711	24037670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_24040663_24040892_24041012_24041379_24041673_24042762_24042877_24042987_24043089_24043183
92119	chr7	+	5345	16	Genic_Genomic	ENSMUSG00000098066.3	novel	633	4	NA	NA	4518	22160	multi-exon	FALSE	non_canonical	0	0	junction_1	0	253	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGTCTGCTCTGACATTG	NA	False	NA	NA	False	NA	NA	NA	92293464	92318810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_92293986_92295197_92295234_92295637_92295731_92296135_92296291_92297148_92297334_92298133_92298240_92298663_92298783_92302356_92302456_92306510_92308073_92308610_92309097_92309207_92309389_92310166_92311288_92312672_92312865_92313174_92313362_92314945_92315073_92318635
92120	chr5	-	5627	14	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	-8018	-51	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_13	110.052542588427	12	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGAAACCCTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	114112835	114077876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114112650
92123	chr4	+	2460	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	3044	5	NA	NA	-37	0	multi-exon	FALSE	canonical	0	0	junction_3	1.6393596310755	672	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	4982	False	NA	NA	False	NA	NA	NA	145241416	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145241589_145343640_145343746_145348721_145349286_145349370_145350039_145350964
92124	chr12	+	1755	8	FSM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	-493	-439	-82	6	multi-exon	FALSE	canonical	1	4	junction_7	75.5075344260561	46	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTAGGCCATGTCTTA	NA	False	NA	NA	False	NA	NA	NA	3285421	3300383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521_3291579_3297351_3297439_3299738
92125	chr10	+	1148	4	NNC	ENSMUSG00000061315.15	novel	885	8	NA	NA	53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5107.5393292661	4	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	5025	False	NA	NA	False	NA	NA	NA	127871556	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127872373_127883928_127883997_127884113_127884237_127884361
92126	chr8	+	2677	12	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	2606	28420	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGACTTGCACCAGGGACAGG	NA	False	NA	-40	True	NA	NA	NA	73214339	73243265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73215202_73215279_73215465_73215591_73215688_73215823_73215949_73216022_73216165_73216247_73216335_73216644_73216781_73216923_73217167_73217933_73218364_73220226_73220403_73221606_73221777_73243240
92128	chr4	-	3104	24	FSM	ENSMUSG00000028559.18	ENSMUST00000030288.14	2871	24	-9	-224	-9	184	multi-exon	FALSE	canonical	1	25	junction_18	119.667039647815	76	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAACCAGGGCAGTTTGG	NA	False	NA	NA	False	NA	NA	NA	109059478	108918627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
92129	chr7	-	2764	24	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	2	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_23	458.116791144925	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143153766	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143150797_143150876_143153718
92130	chr9	-	2616	12	NNC	ENSMUSG00000031922.13	novel	2523	11	NA	NA	10	-8	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	93.9848765748691	354	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTAACAGCCAGCTAACAA	NA	False	NA	NA	False	NA	NA	NA	13738393	13719098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13737837_13737950_13738151
92131	chr17	+	2902	7	FSM	ENSMUSG00000023908.9	ENSMUST00000233954.2	2902	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	45.7484061653154	10	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCATAGCTCTTCTTGTC	3071	False	NA	NA	False	NA	NA	NA	23945442	23955701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_23945616_23951310_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
92132	chr11	+	3444	3	FSM	ENSMUSG00000017776.16	ENSMUST00000017920.14	3642	3	197	1	-86	-1	multi-exon	FALSE	canonical	3	225	junction_2	120.5	255	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAATGTTTGGCTTGGTG	2295	False	NA	NA	False	NA	NA	NA	75570281	75596890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75570491_75583022_75583559_75594191
92133	chr7	-	2086	5	NIC	ENSMUSG00000074129.15	novel	992	6	NA	NA	-4	0	intron_retention	FALSE	canonical	3	15796	junction_2	661.457859579883	2	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCATGCCTGCCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	44778151	44775351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776699_44776919
92134	chr19	+	2092	5	NNC	ENSMUSG00000055491.15	novel	564	5	NA	NA	97	1256	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	170.817153705358	1	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCAGCAGCAGCTCAGG	NA	False	NA	NA	False	NA	NA	NA	46045794	46052498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46046016_46049841_46050016_46050582_46050730_46050840_46050943_46051050
92135	chr11	-	2219	2	Intergenic	novelGene_2547	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	1	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAGTTCCCAACATTTAA	NA	False	NA	NA	False	NA	NA	NA	121816107	121795489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121797657_121816055
92136	chr12	+	1631	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-590	251	-10	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	39	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAATAACTCCATGTTC	NA	False	NA	NA	False	NA	NA	NA	72132881	72148225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
92137	chr17	+	1037	3	Antisense	novelGene_ENSMUSG00000024121.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGCGGCGGCGAGCTAGGA	NA	False	NA	NA	False	NA	NA	NA	24382838	24388287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24383582_24383671_24383859_24388180
92138	chr5	-	8269	10	Intergenic	novelGene_710	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	450	145	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACACTGAAAACTCAAGAGC	NA	False	NA	NA	False	NA	NA	NA	42174562	41721596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_41722852_41812751_41812943_41870354_41870977_42006539_42006569_42020791_42021189_42144759_42145262_42160710_42163145_42165809_42166633_42172504_42174412_42174453
92139	chr7	+	1092	6	NNC	ENSMUSG00000063229.16	novel	1277	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3116.20044284703	3	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500314_46504481
92141	chr4	+	1285	11	Antisense	novelGene_ENSMUSG00000057236.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGCTCCACTCCGCGCGC	NA	False	NA	NA	False	NA	NA	NA	129211440	129229096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_129211552_129211654_129211713_129212236_129212312_129214259_129214344_129215649_129215774_129215871_129216033_129216145_129216260_129216484_129216665_129222382_129222526_129228288_129228438_129229010
92142	chr17	-	1872	10	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	62	690	44	393	5prime_fragment	FALSE	canonical	3	9221	junction_3	841.209975108606	36	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTGCGAGACAACTCTACAA	NA	False	NA	NA	False	NA	NA	NA	45884135	45879390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
92143	chr17	-	2430	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	1	intron_retention	FALSE	canonical	2	72	junction_9	3282.20513679447	18	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884199	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882453_45882690_45882838_45884092
92144	chr11	-	1382	10	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	931.941038245141	7	7	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9583	False	NA	NA	False	NA	NA	NA	5828214	5822187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823791_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
92145	chr19	+	7304	5	NNC	ENSMUSG00000071644.11	novel	1272	5	NA	NA	253	-312	intron_retention	FALSE	non_canonical	0	0	junction_1	4844.8943938439	58	110	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTGAACATTGAACTTTT	2271	False	NA	NA	False	NA	NA	NA	8945832	8955531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8948862_8949112_8952552_8954367_8954855_8954948_8955074_8955307
92146	chr15	+	2695	5	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	77	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTAAAGGGAAGAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	36771013	36791234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775827_36776494_36776614_36790930
92147	chr16	+	4557	5	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1632	junction_1	201.287108380045	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22929474_22929875_22930014_22930252_22930343_22930566
92148	chr11	+	4452	7	NIC	ENSMUSG00000037331.16	novel	6617	19	NA	NA	9263	0	intron_retention	FALSE	canonical	3	480	junction_6	90.5403531888161	18	69	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGTCTCCCATCT	NA	False	NA	NA	False	NA	NA	NA	57941701	57952860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_57941733_57941827_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57948215_57949384
92149	chr2	-	7380	35	Fusion	ENSMUSG00000090157.8_ENSMUSG00000086192.2	novel	1492	3	NA	NA	11000	42183	intron_retention	FALSE	non_canonical	0	0	junction_1	0	338	20	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCGCCCGCGGCGCGTGG	NA	False	NA	NA	False	NA	NA	NA	31943176	31864472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_31864619_31866509_31866707_31867774_31867926_31869699_31869900_31870520_31870593_31872622_31872685_31873132_31873238_31878164_31878272_31879083_31879150_31880244_31880373_31881273_31881436_31884532_31884998_31886393_31886562_31887962_31888058_31892598_31892689_31892890_31893041_31894322_31894482_31896698_31896802_31900191_31900375_31901020_31901096_31901194_31901275_31907031_31907348_31908204_31908367_31910265_31910369_31915253_31915329_31916857_31916937_31920716_31920809_31921260_31921319_31923212_31924980_31928111_31928182_31929328_31929489_31932428_31932579_31937411_31937586_31941016_31941161_31942110
92150	chr2	+	2402	9	NNC	ENSMUSG00000039356.16	novel	2076	8	NA	NA	0	113858	intron_retention	TRUE	non_canonical	0	0	junction_8	306.905421099074	11	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTTAGATAGATGCCAAAC	NA	False	NA	NA	False	NA	NA	NA	31560745	31685219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31566749_31568462_31568640_31569862_31569992_31570501_31571242_31685127
92151	chr7	+	3877	23	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	-232	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	38.1524779044289	19	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGAGTGCCTGTGTGTCCT	267	False	NA	NA	False	NA	NA	NA	110627925	110655582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110655008
92152	chr10	+	2105	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	194	811	-8	-197	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACATAGGCTCCCCAATGC	1577	False	NA	NA	False	NA	NA	NA	79690454	79699455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
92153	chr7	-	829	6	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5785.23556650894	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACTGGATTGTGTCC	8423	False	NA	NA	False	NA	NA	NA	99132857	99128088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99131013_99131701_99131908_99132798
92154	chr5	-	3160	13	ISM	ENSMUSG00000062604.12	ENSMUST00000088392.9	6491	15	68042	2900	878	-712	3prime_fragment	FALSE	canonical	3	183	junction_8	32.7638859450802	8	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTTTTGGGGTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	23753490	23711161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_23712719_23718949_23719043_23719631_23719702_23723413_23723522_23723616_23723718_23729145_23729614_23730493_23730744_23731787_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452
92155	chr9	+	4953	22	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	0	175	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	93.9041582130696	279	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGACAAGTTTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	56979323	57035825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56979348_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431_57034902_57034992
92156	chr10	-	2203	13	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.805619318392	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTTGTGTGTTCTCTTT	8737	False	NA	NA	False	NA	NA	NA	128401811	128393635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394233_128394468_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
92157	chr7	-	625	2	NNC	ENSMUSG00000087412.5	novel	849	2	NA	NA	-25	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	92828877	92828184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_92828408_92828475
92158	chr17	-	3153	13	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	209	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCAGACTTTAGGAAATT	NA	False	NA	NA	False	NA	NA	NA	56630486	56618681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56619279_56619870_56619968_56620040_56620251_56622190_56622314_56622396_56622505_56622774_56622881_56624002_56624113_56624991_56625149_56625244_56625382_56627158_56627281_56627394_56627542_56629019_56629124_56629351
92159	chrX	+	1483	5	NIC	ENSMUSG00000008682.14	novel	855	6	NA	NA	-1	-11	intron_retention	FALSE	canonical	3	9221	junction_2	201.900191926605	9511	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCGCTTATGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	73314461	73316730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
92160	chr1	+	2032	16	Antisense	novelGene_ENSMUSG00000026356.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	46	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGACACTGGATTTGGG	NA	False	NA	NA	False	NA	NA	NA	128291443	128344952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_128292065_128294435_128294507_128294657_128294774_128296105_128296183_128297229_128297273_128299876_128300026_128301675_128301824_128303916_128304050_128306502_128306617_128314854_128314913_128316854_128316937_128319007_128319111_128333102_128333205_128341395_128341502_128343103_128343148_128344887
92161	chr16	-	1643	7	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	12	-1699	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	449.096283910502	7	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCCGCTTACCTCCTTCA	8687	False	NA	NA	False	NA	NA	NA	33787361	33776862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782357_33782439_33782611_33784141_33784296_33787195
92162	chr15	+	7739	35	NNC	ENSMUSG00000022142.9	novel	7832	35	NA	NA	29	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	56.5859422306591	233	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTGTTTGTATA	NA	False	NA	NA	False	NA	NA	NA	8138848	8190728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146_8164210_8165241_8165390_8166116_8166184_8167337_8167454_8169334_8169433_8170712_8170844_8172449_8172644_8173534_8173674_8174971_8175108_8176626_8176781_8176981_8177087_8177780_8177936_8180241_8180372_8181196_8181311_8182599_8182721_8183123_8183235_8184399_8184537_8186169_8186277_8187109
92163	chr8	+	3520	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-86	-562	multi-exon	FALSE	non_canonical	0	0	junction_1	639.347917803757	8	39	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCAGGGGGTAAATTTAC	NA	False	NA	NA	False	NA	NA	NA	19834675	20045326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030548_20030757_20035860_20036160_20039783_20039904_20041811_20043739_20044551
92164	chr7	+	3216	4	NNC	ENSMUSG00000020420.9	novel	4031	6	NA	NA	195	-165	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28.709270666846	27	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGGGCTGGAGCGAGCA	1635	False	NA	NA	False	NA	NA	NA	27562176	27580085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_27562272_27562813_27562941_27564994_27565094_27577190
92165	chr14	+	1963	6	NNC	ENSMUSG00000096003.8	novel	1955	7	NA	NA	5727	55	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.8	13	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTCTGTGGGGGTCCTTC	NA	False	NA	NA	False	NA	NA	NA	17086450	17104034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_17086603_17096366_17096502_17097233_17097397_17098346_17098479_17099153_17099337_17102836
92166	chr3	-	3671	15	FSM	ENSMUSG00000027981.15	ENSMUST00000092154.10	3888	15	-10	227	-10	170	multi-exon	FALSE	canonical	3	32	junction_1	23.6233195061532	102	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTATCTAGTTAATTA	NA	False	NA	NA	False	NA	NA	NA	113423808	113398942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_113400949_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
92167	chr12	+	4274	2	Antisense	novelGene_ENSMUSG00000041359.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	84	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGCACGCCTTTAATCC	NA	False	NA	NA	False	NA	NA	NA	105181840	105186158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_105183316_105183359
92168	chrM	+	2404	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-580	0	580	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	-4	True	NA	4	True	NA	NA	NA	11741	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_14100
92169	chrX	+	1739	2	Genic_Genomic	ENSMUSG00000081205.5	novel	1068	1	NA	NA	-49	742	multi-exon	TRUE	canonical	1	155	junction_1	0	2	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATAATA	NA	False	NA	NA	False	NA	NA	NA	79500298	79502157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_79500973_79501092
92170	chr19	-	2459	10	ISM	ENSMUSG00000042401.9	ENSMUST00000238290.2	2164	15	112911	14751	-30920	-3	internal_fragment	FALSE	canonical	3	28	junction_8	17.4610678049451	25	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAAGTCTTCCAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	42307313	42271476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043
92171	chr6	+	3012	6	Intergenic	novelGene_4239	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	169	24	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGACGCCGGCGAGGCCGCC	NA	False	NA	NA	False	NA	NA	NA	122431482	122463423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_122433627_122436054_122436254_122437918_122438004_122440933_122441166_122449495_122449723_122463298
92172	chr4	+	2535	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-485	772	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.7262385167301	2	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145172824	145178230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145173196_145173287_145173342_145176036_145176243_145176326
92173	chr8	+	2672	2	ISM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	-19	7	-19	-7	intron_retention	FALSE	canonical	3	99	junction_1	0	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGAAGACACATATAGAGT	NA	False	NA	NA	False	NA	NA	NA	85640000	85649537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_85640158_85647022
92174	chr11	+	1416	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	13	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17708.5	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCATGGTAAGCATATATG	NA	False	NA	NA	False	NA	NA	NA	62442009	62444023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443753_62443806
92175	chrUn_MU069435v1	+	579	1	Intergenic	novelGene_4753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTGTCTCTGCGGGCTT	NA	False	NA	NA	False	NA	NA	NA	0	579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
92176	chr14	-	2670	14	NNC	ENSMUSG00000022185.20	novel	4048	18	NA	NA	-261	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	169.928561390754	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCTGACTTAGTTTTG	9929	False	NA	NA	False	NA	NA	NA	54902395	54879644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54880294_54880446_54880506_54881635_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828
92177	chr18	-	3821	33	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	457.619844275792	20	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTTTGGGCCATGTTA	NA	False	NA	NA	False	NA	NA	NA	42395194	42335417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377905_42377943_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
92178	chrM	+	1189	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	427	-71	427	71	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	28	False	NA	65	True	NA	NA	NA	5754	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
92179	chr5	-	1141	1	Intergenic	novelGene_735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGTTTTTCTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	86184612	86183471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_86183500_86184600
92180	chr4	-	1789	8	NNC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	417.754444034057	112	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGTCTCAAGTCAAATG	NA	False	NA	NA	False	NA	NA	NA	148711197	148701187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148701302_148702022_148702807_148703145_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
92181	SIRV12001	+	5932	1	FSM	SIRV12001A	SIRV12001	12029	1	0	6097	0	-6097	mono-exon	FALSE	NA	NA	NA	NA	NA	278	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACGATAACCATCTAACTT	NA	False	NA	NA	False	NA	NA	NA	0	5932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV12001_+_0_5900
92182	chr13	+	3896	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	39	-519	-3	164	multi-exon	FALSE	canonical	3	141	junction_1	34.1	8	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCATTTGTGCTATGCCT	NA	False	NA	NA	False	NA	NA	NA	104315343	104340044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
92183	chr18	-	6142	26	FSM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	3	-113	3	113	multi-exon	FALSE	canonical	0	0	junction_8	215.348105169282	545	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATTGGCTTTTTTGTAC	-2	True	NA	NA	False	NA	NA	NA	6241520	6200888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
92184	chr8	+	2998	7	Genic_Genomic	ENSMUSG00000001909.17	novel	502	2	NA	NA	-15210	-17	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATATCTTAGGGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	85397725	85413739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_85398421_85398986_85399936_85401393_85401491_85401626_85401737_85402715_85402890_85402971_85403882_85413676
92185	chr4	+	1174	8	NNC	ENSMUSG00000028410.14	novel	4119	8	NA	NA	-278	-794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1005.36672159862	3	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTTGCCCTGTATGTAT	24	False	NA	NA	False	NA	NA	NA	40723770	40733106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40723845_40723972_40724151_40726104_40726150_40728017_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
92187	chr12	+	867	4	NNC	ENSMUSG00000055884.9	novel	1682	7	NA	NA	3	-6654	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	59.9462722406953	108	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGATTAAAAAGCAAAAGGA	9287	False	NA	NA	False	NA	NA	NA	65122383	65134204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_65122952_65123815_65123989_65129805_65129884_65134156
92188	chr9	+	936	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	101	901	1	-91	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	9	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	119956855	119960534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
92190	chr9	+	4091	14	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	27	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	92.5282621145606	3	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACCATGTTATGTTGCT	NA	False	NA	NA	False	NA	NA	NA	109760894	109913010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
92191	chr4	-	4442	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	65106	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.201572947855	5	260	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAACCCCAGAATCCTG	NA	False	NA	NA	False	NA	NA	NA	146994047	146911046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913913_146914075_146914216_146976176_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
92192	chr11	-	8043	26	NNC	ENSMUSG00000018501.18	novel	6328	28	NA	NA	-390	34574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.894625124691	255	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCGTCTGACGCGTCCTC	NA	False	NA	NA	False	NA	NA	NA	62236117	62172677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62172713_62174420_62174531_62174953_62174996_62175828_62175884_62176647_62176712_62182949_62183043_62199865_62200018_62203839_62204003_62204833_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060
92194	chr7	+	8660	18	Fusion	ENSMUSG00000053877.13_ENSMUSG00000106715.4	novel	2048	10	NA	NA	17	1	intron_retention	FALSE	non_canonical	0	0	junction_1	32.2244507309821	3	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTAATTGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	127111215	127164443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_127111402_127137153_127137343_127137674_127137941_127138120_127138409_127138928_127139094_127139827_127140095_127140413_127141880_127148311_127148578_127148704_127148908_127151430_127151601_127151739_127151937_127152033_127152149_127152346_127152467_127156579_127156781_127156937_127157022_127157139_127160958_127162293_127162465_127163955
92195	chr8	+	4266	17	ISM	ENSMUSG00000031565.19	ENSMUST00000084027.13	5025	18	13573	6	51	-2	3prime_fragment	FALSE	non_canonical	0	0	junction_8	65.6180948748133	216	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCAGGTCTACTTGACTC	NA	False	NA	NA	False	NA	NA	NA	26022347	26065728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_26022445_26045523_26045791_26047746_26047837_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056930_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
92196	chr15	-	1216	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	681.347704096485	1	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGTGTGTATTTATGG	NA	False	NA	NA	False	NA	NA	NA	51728879	51649955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661137_51662652_51662756_51705863_51706021_51728721
92197	chr15	-	2629	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-49	-22	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1556.05845541441	3	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATAAATATTGATGATGG	709	False	NA	NA	False	NA	NA	NA	36793812	36771035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772190_36772325_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
92198	chr13	+	3441	8	Antisense	novelGene_ENSMUSG00000114793.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	17.846282411706	309	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGCATGTCTGCCTGGA	5845	False	NA	NA	False	NA	NA	NA	66939249	67010230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66939349_66997511_66998983_66999150_66999487_66999654_66999963_67000046_67000943_67002548_67002606_67002804_67002936_67010087
92199	chr16	-	6609	17	NIC	ENSMUSG00000022789.16	novel	3951	18	NA	NA	-8	-7	intron_retention	FALSE	canonical	3	945	junction_3	106.025056000928	21	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTGCAATTGCCAGTAA	NA	False	NA	NA	False	NA	NA	NA	16176831	16130116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
92200	chr16	-	3116	11	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	797	6185	intron_retention	FALSE	non_canonical	0	0	junction_1	0	9	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGCGGACGGCGCCGCCC	NA	False	NA	-31	True	NA	NA	NA	22932697	22926507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22926568_22927334_22927382_22927466_22927600_22927867_22928008_22928732_22928904_22928983_22929092_22929327_22929472_22929873_22930011_22930249_22930342_22930565_22931933_22931980
92201	chr4	+	3570	2	Intergenic	novelGene_1846	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGGTGTTGTGTTCTATT	NA	False	NA	NA	False	NA	NA	NA	51875818	51879781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_51876863_51877255
92203	chr14	-	3752	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5300	-4316	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	101	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAATTTGTGTATGAGT	2172	False	NA	NA	False	NA	NA	NA	51039889	51035577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_51036607_51037166
92204	chr17	-	2005	1	Intergenic	novelGene_223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCGGAGCACCACATCGA	NA	False	NA	NA	False	NA	NA	NA	40155915	40153910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_40153900_40155900
92207	chr1	-	736	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-55	-3	-55	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653787	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653800
92209	chr5	-	3950	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	0	-52	combination_of_known_junctions	FALSE	canonical	2	64	junction_13	204.849353428318	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTCTTCCCTACTTTCT	8167	False	NA	NA	False	NA	NA	NA	100564034	100509564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
92210	chr2	+	7880	19	NNC	ENSMUSG00000036617.18	novel	7197	21	NA	NA	-176	-18	intron_retention	FALSE	non_canonical	0	0	junction_6	65.750369665205	408	118	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTCATCAACCATGTG	4620	False	NA	NA	False	NA	NA	NA	20524425	20815317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749183_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802690_20802843_20803426_20803595_20806352_20806473_20810395_20810474_20810585_20812836_20813520
92211	chr6	+	1941	4	NNC	ENSMUSG00000003031.15	novel	2393	3	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.05480466765633	139	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGAGTGCAACTGTCC	NA	False	NA	NA	False	NA	NA	NA	134897541	134902476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_134898358_134898918_134899047_134901205_134902063_134902336
92212	chr13	+	619	3	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	60	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	169	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAAAAAAGATCCTCCT	NA	False	NA	NA	False	NA	NA	NA	61952139	61974317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61952356_61963139_61963348_61974122
92213	chr15	-	7453	35	Antisense	novelGene_ENSMUSG00000022142.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	339	20	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGCCAGGTCATGACGCA	NA	False	NA	NA	False	NA	NA	NA	8190401	8138815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_8139087_8141766_8141910_8143129_8143224_8144961_8145033_8145912_8146005_8146715_8146885_8147465_8147571_8148661_8148734_8149914_8150006_8150939_8151042_8151536_8151691_8153704_8153806_8157889_8158061_8159606_8159724_8160948_8161039_8163556_8163649_8164145_8164208_8165239_8165389_8166115_8166183_8167335_8167454_8169334_8169432_8170711_8170842_8172449_8172642_8173532_8173672_8174969_8175106_8176624_8176781_8176981_8177084_8177777_8177934_8180239_8180372_8181196_8181309_8182597_8182719_8183121_8183234_8184398_8184536_8186168_8186275_8187107
92214	chrX	-	2250	17	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-3929	-5	intron_retention	FALSE	non_canonical	0	0	junction_9	685.836248221833	136	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72834432	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826276_72826323_72830380_72830538_72830805_72830911_72832438_72832555_72833400_72833478_72833633_72833725_72833962_72834029_72834257
92216	chrM	-	2068	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	735	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAACGCTTTCTTTATTG	9986	False	NA	-1	True	NA	NA	NA	3710	1642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1600_3700
92217	chr7	+	4243	25	FSM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	23	34	-21	-34	multi-exon	FALSE	canonical	3	158	junction_8	10.558616149856	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCAGTCACTTAATAAACC	522	False	NA	NA	False	NA	NA	NA	110628180	110655550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652686_110653020_110653134_110654565
92218	chr8	+	433	3	NNC	ENSMUSG00000031762.8	novel	511	3	NA	NA	-60	-4	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	6740.5	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTCAGCTTGTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	94899427	94900188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94899504_94899688_94899821_94899963
92219	chr10	+	1895	16	Antisense	novelGene_ENSMUSG00000034024.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCGGGGAAAGAGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	116886909	116899671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_116887184_116888922_116889071_116889948_116890045_116890781_116890888_116891014_116891128_116891936_116892063_116893076_116893181_116893696_116893826_116894003_116894098_116896552_116896756_116897202_116897315_116897408_116897487_116897929_116898039_116898720_116898788_116898880_116898955_116899609
92220	chr3	-	1775	5	NNC	ENSMUSG00000036513.16	novel	2992	5	NA	NA	12	0	intron_retention	FALSE	canonical	2	5	junction_1	265.835828096967	10	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	NA	False	NA	NA	NA	57559117	57553779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_57554298_57556179_57556344_57557462_57557637_57558111_57558921_57559007
92221	chrM	-	2004	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5242	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCCAATTTTAAGTTTAG	9986	False	NA	-1	True	NA	NA	NA	3710	1706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1700_3700
92222	chr3	+	3403	7	NNC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	1578.41309196575	2	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACGATCAGACCGGCTTG	NA	False	NA	NA	False	NA	NA	NA	89986971	90008199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993748_89993887_89994761_89994880_89994980_89996431_89997103_89997167_89997316_89997387_90006834
92223	chr1	+	1502	6	NNC	ENSMUSG00000026411.18	novel	1806	6	NA	NA	4	248	intron_retention	FALSE	canonical	0	0	junction_5	170.560722324925	9	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGCAGATCTCAAGGGA	NA	False	NA	NA	False	NA	NA	NA	135945803	135962766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805_135962108_135962441
92224	chr2	-	3398	24	NIC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	41	0	intron_retention	FALSE	canonical	3	436	junction_12	73.0457297789638	16	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGACCTAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	127673683	127643044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
92225	chr6	+	4106	2	Intergenic	novelGene_4122	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAACACCAGAAAAAATTCAA	NA	False	NA	NA	False	NA	NA	NA	14085042	14091498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_14088494_14090843
92226	chr12	+	2066	8	NIC	ENSMUSG00000097451.12	novel	1627	11	NA	NA	41	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	285.834974509876	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTAAAAAAAGTGTGAAGT	2938	False	NA	NA	False	NA	NA	NA	109612636	109628139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109613186_109615587_109615677_109616505_109616592_109620719_109620867_109622282_109622369_109624491_109624556_109626156_109626242_109627179
92227	chr4	+	2251	5	Intergenic	novelGene_2035	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	239.358909380871	740	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	2262	False	NA	NA	False	NA	NA	NA	146289320	146319727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146295675_146295763_146312866_146312972_146317966
92228	chr6	-	2356	10	NNC	ENSMUSG00000005667.9	novel	1421	9	NA	NA	9	23773	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1059.91321564143	456	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCACATGTACATACAGAC	NA	False	NA	NA	False	NA	NA	NA	83294579	83258899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83259033_83271665_83271860_83282719_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
92229	chr8	+	3632	6	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-21	3809	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	503.466543079081	1003	74	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGATTTCTCCTAAACAGT	7167	False	NA	NA	False	NA	NA	NA	20143826	20182476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20143957_20157802_20158009_20163109_20163409_20167037_20167158_20173024_20173282_20179856
92230	chr5	-	2381	15	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	170	junction_14	144.727259325383	169	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGAGCCTCCCGCATC	1958	False	NA	NA	False	NA	NA	NA	138185482	138176881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
92231	chr14	-	2079	8	NNC	ENSMUSG00000091563.9	novel	1961	7	NA	NA	-91683	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2.32992949004287	7	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGTGTATGCTTCTGC	NA	False	NA	NA	False	NA	NA	NA	18450930	18336989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_18338138_18341636_18341820_18342497_18342630_18343579_18343743_18344474_18344585_18354336_18354488_18357666_18357781_18450852
92232	chr9	-	749	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	33	-14	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	9762	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
92233	chr9	+	3712	17	NNC	ENSMUSG00000032401.16	novel	2171	14	NA	NA	15112	34953	intron_retention	FALSE	non_canonical	0	0	junction_1	0	29	34	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAATGGACTAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	64044428	64080353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64045344_64047173_64047302_64051364_64051475_64054106_64054203_64054551_64054690_64057419_64057595_64060166_64060244_64060829_64060932_64062444_64063391_64065976_64066056_64068105_64068254_64068647_64068724_64069845_64070048_64071629_64071746_64072642_64072740_64075893_64075946_64080098
92234	chr11	-	1045	10	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	7715.77233758437	15	15	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	NA	False	NA	NA	NA	33113072	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111616_33113018
92235	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
92236	chr5	+	4483	4	Intergenic	novelGene_893	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	74	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGCACTTATAATAAAACAA	2923	False	NA	NA	False	NA	NA	NA	145266843	145273962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_145267994_145268038_145268159_145270533_145271862_145272077
92237	chr8	-	4723	5	Intergenic	novelGene_1663	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGTCGCAACTATGGTAG	NA	False	NA	NA	False	NA	NA	NA	72690021	72662336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_72662582_72666964_72667090_72682042_72682170_72682975_72683041_72685860
92238	chr17	+	3303	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	599.13614108611	13	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	NA	False	NA	NA	NA	56610399	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627506_56629417
92239	chr13	+	7388	29	NNC	ENSMUSG00000021692.10	novel	3338	10	NA	NA	-9	61889	intron_retention	FALSE	non_canonical	0	0	junction_10	291.38209319499	20	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGAGGGGGCGGGGTGGCG	NA	False	NA	NA	False	NA	NA	NA	107083653	107158621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_107083792_107084093_107084168_107085208_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162_107098729_107100844_107100984_107101524_107101627_107105144_107105296_107111001_107111071_107111878_107111989_107113162_107113376_107113499_107113639_107114533_107114626_107115481_107115544_107115984_107116074_107119029_107119195_107119699_107119759_107121573_107121667_107123775_107123878_107124517_107124584_107126545_107126601_107129670_107129790_107130357_107130455_107158521
92240	chrUn_MU069435v1	+	1905	4	Intergenic	novelGene_4780	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	52	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACAGAGTCTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	22760	29174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_22825_26908_27816_28012_28876_29103
92241	chr2	+	5112	22	NIC	ENSMUSG00000027678.18	novel	5757	23	NA	NA	28	-532	combination_of_known_splicesites	TRUE	canonical	0	0	junction_18	61.6035529204794	36	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGGTCCTGCACTCTGA	NA	False	NA	NA	False	NA	NA	NA	165834584	165912858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165910251_165910469_165911124_165911300_165911730_165911873_165912051
92242	chr8	-	7058	3	ISM	ENSMUSG00000031508.15	ENSMUST00000211690.2	2625	4	-32	-2	-32	0	intron_retention	FALSE	canonical	3	454	junction_1	47	39	95	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	4083	False	NA	NA	False	NA	NA	NA	11674658	11661582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_11662948_11665814_11665911_11669061
92243	chr13	+	2600	11	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-11	-5	intron_retention	FALSE	canonical	3	551	junction_5	39.2372272210971	2413	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTATGAGCAAGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	107083651	107096727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
92244	chr16	-	1903	3	NNC	ENSMUSG00000059920.10	novel	5522	3	NA	NA	165	-3404	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	85	9	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAACAGATAATAACAAA	NA	False	NA	NA	False	NA	NA	NA	64591359	64585902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_64587357_64589286_64589531_64591154
92245	chr12	+	5091	5	FSM	ENSMUSG00000021264.13	ENSMUST00000021692.9	6178	5	1087	0	1087	0	multi-exon	FALSE	canonical	3	62	junction_1	10.779030568655	343	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTTCTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	108759985	108786074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_108760018_108772404_108772568_108778844_108778906_108780531_108780691_108781398
92246	chr2	-	5587	11	NNC	ENSMUSG00000074890.5	novel	2047	2	NA	NA	-17107	-929	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	269	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTTAGGACCTAAGGGT	NA	False	NA	NA	False	NA	NA	NA	120988241	120969007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120971147_120972572_120972784_120973003_120973136_120973629_120973690_120976512_120976601_120978720_120978802_120980698_120980828_120981611_120981691_120982908_120983046_120985195_120985301_120985815
92247	chrM	+	1143	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	1	0	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	-2	True	NA	87	True	NA	NA	NA	14144	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
92248	chr2	-	3968	18	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	45	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	451.815882517981	1	40	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTGTGGTTATGGTA	NA	False	NA	NA	False	NA	NA	NA	103627404	103595358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603157_103603371_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
92249	chr8	+	7950	2	Intergenic	novelGene_1715	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTTTTCTCGCTCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	101245263	101348310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_101249585_101344681
92250	chr2	-	2347	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	125	3	-27	-3	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	28	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTGGACTTTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	75534860	75505859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
92251	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	75	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
92252	chr7	+	3100	5	ISM	ENSMUSG00000040268.18	ENSMUST00000120441.8	3777	13	39042	-180	-106	180	3prime_fragment	FALSE	canonical	3	31	junction_4	86.8849814409832	13	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATCCTTGAATTCTTGG	NA	False	NA	NA	False	NA	NA	NA	130506527	130515222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_130506665_130507120_130507185_130510065_130510156_130511317_130511466_130512561
92254	chr11	+	267	4	ISM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	13	473	13	-473	5prime_fragment	FALSE	canonical	3	1304	junction_1	8680.81859939231	8	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTACGCCTGAGGGAGAAT	NA	False	NA	NA	False	NA	NA	NA	114559464	114562684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559
92255	chr9	+	3227	5	FSM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	26	-595	11	595	multi-exon	FALSE	canonical	3	72	junction_2	7.15454401062709	212	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGTAGAAAATATCTAATAA	NA	False	NA	NA	False	NA	NA	NA	50679561	50685243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_50679756_50679987_50680145_50681409_50681614_50681931_50682091_50682730
92256	chrM	+	562	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	582	0	582	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	10	False	NA	26	True	NA	NA	NA	14726	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14700_15300
92257	chr14	-	6186	17	NNC	ENSMUSG00000046753.11	novel	4262	18	NA	NA	362	38554	intron_retention	FALSE	non_canonical	0	0	junction_1	0	662	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCCAAAGCATTTTTACT	NA	False	NA	NA	False	NA	NA	NA	27205470	27164492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_27164576_27168339_27168497_27170108_27170218_27171713_27171816_27171900_27172007_27181733_27181808_27181896_27181970_27183040_27183741_27186000_27186369_27188121_27188275_27193578_27194501_27197649_27197773_27198492_27198653_27199066_27199175_27201582_27201763_27201878_27202047_27202870
92258	chr7	-	1000	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	28	-9	28	9	mono-exon	FALSE	NA	NA	NA	NA	NA	253	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	114305442	114304442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114304400_114305400
92259	chr7	+	3673	27	NIC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-10	-11	intron_retention	FALSE	canonical	0	0	junction_1	272.71937860639	77	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGATGCCTACTTGGTGA	2610	False	NA	NA	False	NA	NA	NA	13012741	13045339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
92260	chr6	-	5095	25	NNC	ENSMUSG00000030243.17	novel	3389	15	NA	NA	-5	4665	intron_retention	FALSE	non_canonical	0	0	junction_1	73.6045057308918	48	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGGAAGAGACGCTGCCC	6226	False	NA	NA	False	NA	NA	NA	142332767	142291402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_142291530_142293279_142293363_142294246_142294367_142296785_142296915_142299248_142299320_142300346_142300510_142302206_142302308_142303103_142303234_142304119_142304891_142306590_142306721_142307477_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332444
92261	chrM	+	914	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	46	-3	46	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	44	False	NA	NA	False	NA	NA	NA	2796	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
92262	chr4	-	5023	27	Antisense	novelGene_ENSMUSG00000043411.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGCCCGCGCCCAGCTCG	3244	False	NA	NA	False	NA	NA	NA	137385156	137321535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_137321826_137331831_137331953_137333060_137333218_137333997_137334126_137335366_137335494_137336308_137336415_137337997_137338132_137339013_137339103_137340993_137341169_137343023_137343151_137343666_137343780_137348370_137348568_137350580_137350699_137352469_137352597_137355482_137355556_137360423_137360548_137360651_137360780_137361146_137361204_137361463_137361558_137362208_137362318_137365068_137365199_137365462_137365572_137366514_137366622_137371653_137371808_137377601_137377728_137380266_137380330_137383416
92263	chr13	+	4864	4	NNC	ENSMUSG00000021360.17	novel	4038	3	NA	NA	341	0	intron_retention	FALSE	canonical	0	0	junction_1	75.4644876010491	3	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAGTGGATATTTATTT	NA	False	NA	NA	False	NA	NA	NA	41013570	41114368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_41014750_41071429_41072278_41107051_41107148_41111627
92264	chr18	-	4462	25	NNC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	370.342856819491	1	71	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60982036	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961904_60962081_60962188_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
92265	chr6	+	814	2	Intergenic	novelGene_4196	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	991	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAACTTTTAGCCCAAAT	NA	False	NA	NA	False	NA	NA	NA	83270166	83271618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_83270407_83271044
92266	chr6	-	3640	1	FSM	ENSMUSG00000057666.19	ENSMUST00000192506.2	3289	1	-561	210	12	-71	mono-exon	FALSE	NA	NA	NA	NA	NA	13	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	125142527	125138887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125138900_125142500
92267	chr13	-	11871	5	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	128	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCGAACCAACTCGGGA	NA	False	NA	NA	False	NA	NA	NA	23514186	23157809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23158085_23354585_23361359_23508976_23510673_23510750_23513672_23513980
92268	chr2	-	5658	9	ISM	ENSMUSG00000038369.15	ENSMUST00000043126.12	6872	14	19323	21	-2557	-8	3prime_fragment	FALSE	canonical	3	26	junction_5	57.6037108179673	195	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTCATAGAACTTAAAGG	NA	False	NA	NA	False	NA	NA	NA	155263380	155232596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155247394_155250371_155253444_155253567_155256731_155257849_155260797_155260945_155262886
92269	chr10	-	4459	15	FSM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	-8	3315	-8	-3315	multi-exon	FALSE	canonical	3	515	junction_9	90.891306470073	301	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTACAACCTCTTCTTTC	218	False	NA	NA	False	NA	NA	NA	119075968	119038474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355_119052613_119053845_119053970_119055494_119055650_119063307_119063452_119075545
92270	chr16	-	2436	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	63	857	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.5	4323	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTTAGTTCACATAAGCA	6634	False	NA	NA	False	NA	NA	NA	93591726	93588166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_93590262_93590433_93590505_93591456
92271	chr18	-	6070	35	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	-5	34894	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	436.965000617562	14	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCACTGCGGCGCCCAGTG	-65	False	NA	NA	False	NA	NA	NA	10030146	9958171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9958246_9959096_9959170_9959252_9959316_9960485_9960553_9962372_9962492_9963262_9963311_9963821_9963917_9968748_9968832_9970252_9970328_9975597_9975706_9977844_9977977_9984431_9984533_9986286_9986354_9986550_9986602_9986688_9986760_9987067_9987166_9987598_9987662_9989687_9989775_9992127_9992276_9992831_9992908_9993320_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10022817_10022851_10024533_10024680_10029912
92272	chr13	-	2988	5	Fusion	ENSMUSG00000114434.2_ENSMUSG00000114839.2	novel	1153	3	NA	NA	-3566	-116	intron_retention	TRUE	canonical	0	0	junction_1	84.8156088229048	40	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTACTCACCACAT	NA	False	NA	NA	False	NA	NA	NA	66892943	66697892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66698076_66886668_66889043_66889243_66889330_66890829_66891046_66892814
92273	chr8	-	6397	43	FSM	ENSMUSG00000032815.17	ENSMUST00000035495.15	4485	43	-12	-1900	-12	1900	multi-exon	TRUE	canonical	3	94	junction_17	20.5305065860605	226	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATGCCCAAATGCGCTT	NA	False	NA	NA	False	NA	NA	NA	124045327	123993138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
92274	chr12	-	1461	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	9	2	9	-2	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	9	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638763	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
92275	chr2	+	2707	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	45	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	651	False	NA	NA	False	NA	NA	NA	26279357	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286132_26286552
92276	chr14	+	3843	8	NIC	ENSMUSG00000040618.8	novel	2417	9	NA	NA	4	7	intron_retention	FALSE	canonical	3	1534	junction_5	88.3409443518666	1389	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGAAGAATGGCTCAGTG	8895	False	NA	NA	False	NA	NA	NA	55777726	55787288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
92277	chr4	+	5204	25	FSM	ENSMUSG00000028552.14	ENSMUST00000102729.10	5190	25	-23	9	-23	-9	multi-exon	TRUE	canonical	3	117	junction_16	21.9326225188771	199	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAAACTTTGTTATCT	NA	False	NA	NA	False	NA	NA	NA	109137441	109245005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
92278	chr5	+	3976	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	158	73	53	-73	multi-exon	FALSE	canonical	3	209	junction_1	25.703436864876	2	102	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGGCCCTGCCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	135661629	135675157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
92279	chr10	-	1882	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	20	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	620.34576021943	4	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTAATGTCTTACTGATC	NA	False	NA	NA	False	NA	NA	NA	116899699	116886908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891169_116892026_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
92280	chr13	+	875	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	-23	-57	-23	57	mono-exon	FALSE	NA	NA	NA	NA	NA	49	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTTGTAGCATCTTGAT	NA	False	NA	NA	False	NA	NA	NA	108807113	108807988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108807100_108808000
92281	chr17	-	1963	8	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	30	-238	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	317.91854944566	2	37	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTTGTGTCTGATTGCA	NA	False	NA	NA	False	NA	NA	NA	7050153	7005677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006771_7014698_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
92282	chr7	-	922	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	45	1	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	390	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	45109263	45107368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
92283	chr5	+	4167	5	FSM	ENSMUSG00000007812.17	ENSMUST00000199322.5	4157	5	-11	1	-11	-1	multi-exon	FALSE	canonical	3	27	junction_3	175.330402383614	493	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTAGACTCTTTGTTTTG	1320	False	NA	NA	False	NA	NA	NA	145168553	145184110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145179729_145179835_145180384
92284	chr13	-	2957	4	Genic_Genomic	ENSMUSG00000114031.2	novel	908	1	NA	NA	-5568	-101	multi-exon	FALSE	canonical	3	21	junction_1	95.6951177205794	101	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGGATATGAACAGTCAT	NA	False	NA	NA	False	NA	NA	NA	65632674	65626299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_65627120_65628564_65628768_65628968_65630754_65632525
92285	chr2	+	7530	40	NNC	ENSMUSG00000027236.9	novel	5413	8	NA	NA	24874	61787	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	133	27	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCGGTAGAGGCGCCCGAA	NA	False	NA	NA	False	NA	NA	NA	121884006	121948866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121884542_121884860_121885012_121885845_121886002_121886176_121886269_121886547_121886716_121888823_121888929_121889899_121890037_121890180_121890318_121890650_121890850_121891401_121891543_121895389_121896138_121896725_121896943_121899220_121899383_121900349_121900457_121901344_121901545_121902530_121902789_121903324_121903484_121904981_121905096_121905776_121905986_121910715_121910880_121912335_121912403_121913877_121914041_121915373_121915522_121917343_121917451_121918613_121918820_121922639_121922849_121923445_121923619_121923893_121924026_121924940_121925010_121926069_121926247_121927735_121927915_121928583_121928591_121932126_121932259_121934384_121934531_121938513_121938965_121939171_121939311_121942195_121942390_121943495_121943718_121945085_121945269_121948599
92286	chrX	-	3244	5	Fusion	ENSMUSG00000072844.7_ENSMUSG00000086695.2_ENSMUSG00000087263.2	novel	2380	2	NA	NA	1	-1436	multi-exon	FALSE	non_canonical	0	0	junction_2	5.19615242270663	52	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAATCCAGGCCCATCCA	NA	False	NA	NA	False	NA	NA	NA	168769934	168759474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_168760266_168764155_168765249_168766280_168767152_168767934_168768193_168769703
92287	chr9	+	1686	7	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3801	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGGGTTTAAAAGATA	NA	False	NA	NA	False	NA	NA	NA	78385742	78387972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386816_78386904_78387057_78387133_78387433_78387524_78387696_78387800
92288	chr8	-	4036	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	-13	-968	-13	968	multi-exon	FALSE	canonical	3	105	junction_2	27	160	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAGGCAGGAGGATTCCG	8508	False	NA	NA	False	NA	NA	NA	72154446	72142431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_72145800_72145960_72146544_72154361
92289	chr3	+	5586	19	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	2033	-470	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_17	109.89092515808	2	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTTCCTTGTAGCACTG	NA	False	NA	NA	False	NA	NA	NA	116655248	116701356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116655359_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717_116698134_116698203_116699605_116700493
92290	chr17	-	1220	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-219	2919	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCACCCCCACCTGGTGGG	NA	False	NA	NA	False	NA	NA	NA	35821667	35817054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
92291	chrM	+	1453	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-75	0	-75	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	110	False	NA	NA	False	NA	NA	NA	10091	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10100_11500
92292	chr16	+	3017	2	FSM	ENSMUSG00000079737.5	ENSMUST00000225585.2	1705	2	-8	-1304	-8	1304	multi-exon	FALSE	canonical	3	37	junction_1	0	183	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTAAAAAAAGATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	13489784	13497556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_13489943_13494697
92293	chr4	-	4636	10	FSM	ENSMUSG00000028454.17	ENSMUST00000098109.9	4239	10	-43	-354	20	354	multi-exon	FALSE	canonical	3	131	junction_4	26.4280995238864	209	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTTTTTT	13	True	NA	NA	False	NA	NA	NA	43025799	43017280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562
92294	chr1	+	2344	10	NNC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	4	-326	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	45.5422744868117	377	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	NA	False	NA	NA	NA	173248167	173293272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_173248253_173255324_173255465_173276791_173276927_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
92295	chr8	-	2849	9	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-4	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	574.287384503612	22	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTACTGTGAGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	95564897	95549185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553364_95553598_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
92296	chr2	+	2802	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	14	8	14	-8	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	74	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29951878	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
92297	chr4	+	4391	2	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14339	2908	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	0	6	71	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAATGTGACTTATCCTG	NA	False	NA	NA	False	NA	NA	NA	145158970	145180366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145176036
92298	chr1	+	2389	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	200	246	-45	-246	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	1467	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177759	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
92299	chr11	-	2445	17	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	226.14538327147	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	NA	False	NA	NA	NA	70860816	70833902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847144_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
92300	chr3	+	1032	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	24	3	-9	-3	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	49	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3581	False	NA	NA	False	NA	NA	NA	88486938	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
92301	chr11	-	1366	8	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	372.055240577009	58	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1657	False	NA	NA	False	NA	NA	NA	59082591	59074700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59075014_59075261_59075606_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082359
92302	chr14	-	4915	20	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-101	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.8506484075757	2	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655338	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54654833
92303	chr15	-	1844	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	51	4	35	-4	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	62	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTCGTCCTGTGCTCC	2796	False	NA	NA	False	NA	NA	NA	77854962	77843201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
92304	chr11	-	3185	3	Intergenic	novelGene_2311	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	40.5	4	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446486_57448541_57450380_57450429
92305	chr4	+	5000	13	Fusion	ENSMUSG00000067916.10_ENSMUSG00000063245.12	novel	1275	6	NA	NA	42	155	multi-exon	TRUE	non_canonical	0	0	junction_1	22.1108319357027	6	131	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146695459	147265191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146695801_146697934_146698060_146700005_146700119_146739308_146739414_146740239_146740384_146741834_146741973_146742638_146742719_146803511_146804705_146804957_146805189_146817994_146818509_146907047_146908370_147075346_147075834_147264984
92306	chr14	-	2831	16	NIC	ENSMUSG00000023110.13	novel	2691	17	NA	NA	-10	-11	intron_retention	FALSE	canonical	3	685	junction_14	58.7853345278868	21	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCTTTACCCTGCT	4849	False	NA	NA	False	NA	NA	NA	54754828	54744654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54754073_54754703
92307	chr10	+	5222	11	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	27	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	62647009	62728645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658532_62700578_62700639_62713928_62714948_62715048_62715913_62728473
92308	chr2	+	5249	14	NNC	ENSMUSG00000035183.15	novel	1954	9	NA	NA	4883	34801	intron_retention	FALSE	non_canonical	0	0	junction_1	0	554	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCACCCGCGGCCGCCTCG	NA	False	NA	NA	False	NA	NA	NA	124927157	124965398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_124930956_124937625_124937680_124937831_124938040_124939895_124939996_124940369_124940438_124942237_124942339_124950873_124950939_124951072_124951124_124951589_124951744_124952399_124952591_124955767_124955864_124957350_124957411_124958584_124958796_124965306
92309	chr2	-	7117	3	Intergenic	novelGene_2560	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCTGATAAACAGCTTCGG	NA	False	NA	NA	False	NA	NA	NA	8191595	7922981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_7926093_8012603_8013795_8188780
92310	chr17	-	2655	21	NNC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_14	101.901373886715	331	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTGGTTGTGGAGACAG	NA	False	NA	NA	False	NA	NA	NA	24746913	24727830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732297_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
92312	chr16	-	3729	24	FSM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	60	439	-12	-9	multi-exon	FALSE	canonical	3	113	junction_1	25.0911382243075	162	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACTGGCAAAACAAATGT	9758	False	NA	NA	False	NA	NA	NA	13720931	13651450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_13652711_13654249_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
92313	chr4	+	4605	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	15	4021	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.2040487905669	503	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATTAAATTGCTGACTAT	NA	False	NA	NA	False	NA	NA	NA	145136850	145180347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145176036
92314	chr1	-	518	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	406	-33	406	33	mono-exon	FALSE	NA	NA	NA	NA	NA	367	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAACAACAACAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	86836999	86836481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837000
92315	chr7	+	4643	8	FSM	ENSMUSG00000045752.14_ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	49	-3159	-6	0	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	669	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	NA	False	NA	NA	NA	142606524	142624830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
92316	chr6	-	3310	3	Antisense	novelGene_ENSMUSG00000030096.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	39	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGGAAAGGGCCAGGCC	NA	False	NA	NA	False	NA	NA	NA	91735280	91729377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_91729437_91731892_91732079_91732215
92317	chrM	+	2082	2	Genic_Genomic	ENSMUSG00000064340.1_ENSMUSG00000064345.1_ENSMUSG00000064341.1	novel	1038	1	NA	NA	-35	-39	multi-exon	FALSE	non_canonical	0	0	junction_1	0	191	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATAACCCTACCCCTAGC	292	False	NA	74	True	NA	NA	NA	2715	4912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3215_3329
92318	chr4	+	1902	1	Intergenic	novelGene_2141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGGAAAAGTGCCTGG	NA	False	NA	-9	True	NA	NA	NA	147420893	147422795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_147420900_147422800
92319	chr13	-	2687	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-19	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	289.783553599075	18	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTACTTGGTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	6698780	6631209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648029_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
92321	chr16	+	1595	10	FSM	ENSMUSG00000055692.22	ENSMUST00000164950.11	1631	10	221	-185	-11	185	multi-exon	TRUE	canonical	3	122	junction_4	58.6725586266908	57	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTTCTGTTAAGTTCAT	NA	False	NA	NA	False	NA	NA	NA	17094161	17096710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17094333_17094497_17094622_17094700_17094752_17094825_17094904_17095057_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
92322	SIRV12003	+	11944	1	FSM	SIRV12003A	SIRV12003	12000	1	8	48	8	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	111	91	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAACCAATTGATGCAGA	NA	False	NA	NA	False	NA	NA	NA	8	11952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV12003_+_0_12000
92323	chr2	-	4390	7	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078867.10	novel	1581	4	NA	NA	-39	2994	multi-exon	TRUE	non_canonical	0	0	junction_1	24.1781581873668	88	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGATGGACAGGCAGAAACAT	NA	False	NA	NA	False	NA	NA	NA	177090152	177003318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_177005497_177005644_177006909_177007076_177007703_177008856_177008918_177009124_177009252_177016097_177016166_177090086
92324	chr10	+	6295	22	FSM	ENSMUSG00000033105.13	ENSMUST00000048678.7	4667	22	18	-1646	13	-13	multi-exon	FALSE	canonical	3	170	junction_9	27.7651309078683	264	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCACTGCTTGGATTCAAG	NA	False	NA	NA	False	NA	NA	NA	76367458	76392959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
92325	chr17	+	9599	15	NIC	ENSMUSG00000039218.18	novel	8864	15	NA	NA	4	-18	intron_retention	FALSE	canonical	2	4	junction_11	69.7861163901268	24	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAATGAGAAATGCAG	NA	False	NA	NA	False	NA	NA	NA	24022198	24043692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24031595_24034095_24040665_24040894_24040990_24041386_24041675_24042764_24042879_24042989_24043095_24043189
92326	chr1	-	1499	6	NNC	ENSMUSG00000014226.11	novel	2098	6	NA	NA	-22	-555	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1769.80896144188	320	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAGTTCTGCAATCTGT	7344	False	NA	NA	False	NA	NA	NA	160040397	160030491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_160031294_160032533_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
92327	chr14	+	7002	18	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-4	-8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	61.9394726317249	1	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTAGCCTCTCGTGTC	NA	False	NA	NA	False	NA	NA	NA	21531522	21722193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531622_21566693_21567567_21580323_21580434_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
92328	chr15	+	4011	33	NNC	ENSMUSG00000022191.17	novel	3248	20	NA	NA	-3797	-176	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.659988898643	20	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGTAAACGAGGGCAGGA	26	False	NA	NA	False	NA	NA	NA	12833638	12935200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12833646_12834007_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
92330	chr11	-	5593	8	NNC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	-312	15047	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	39.121474868905	332	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGCCCCGGGCCCCGGGC	623	False	NA	NA	False	NA	NA	NA	94242324	94219073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94219211_94224723_94224874_94225251_94225732_94229163_94229346_94230376_94234602_94236772_94236968_94241761_94241929_94242267
92331	chr13	+	2465	4	Intergenic	novelGene_1450	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	85.5608944943113	259	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATGTTATCAATGTGGT	NA	False	NA	NA	False	NA	NA	NA	66773922	66785110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66774068_66782550_66782678_66782878_66783161_66783199
92332	chr3	-	3598	1	ISM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	81575	0	17950	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTTTCCTAGACTA	9507	False	NA	NA	False	NA	NA	NA	94408448	94404850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_94404800_94408400
92334	chr15	-	4844	3	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	0	-1	intron_retention	FALSE	canonical	3	26994	junction_1	2540.5	72	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3587	False	NA	NA	False	NA	NA	NA	79967538	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79965985_79966590
92335	chr9	-	1706	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1034	4	-2	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	11616	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8134	False	NA	-46	True	NA	NA	NA	78387972	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
92336	chr17	-	1043	6	NNC	ENSMUSG00000014769.11	novel	1758	6	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1983.05142646377	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTTTCTTTATCTGGA	NA	False	NA	NA	False	NA	NA	NA	15718546	15695978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15696468_15697576_15697684_15710417_15710539_15713355_15713442_15714677_15714786_15718414
92337	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	11	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
92338	chr17	+	776	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	0	1073	0	-1073	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTGAGTGTCCCGCGGGG	NA	False	NA	-25	True	NA	NA	NA	40157243	40158019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40158000
92339	chr17	+	4210	10	NNC	ENSMUSG00000005370.5	novel	4251	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	848.759806939833	9	62	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	88282489	88298320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_88282834_88287618_88287819_88290872_88291002_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
92340	chr5	+	387	1	Intergenic	novelGene_932	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	218	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
92341	chr6	+	4160	7	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	-1	2811	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2302.87622092219	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCATTAAATCCTGCTAC	5898	False	NA	NA	False	NA	NA	NA	67244020	67264106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244412_67248979_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
92343	chr6	-	3207	8	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-30	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	242.829578267625	11	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTTCTGTAGTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	49191668	49062153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49064375_49064701_49064816_49065363_49065490_49067903_49067985_49071073_49071191_49145403_49145453_49190200_49190262_49191230
92344	chr11	+	5633	24	FSM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	-2	1	-2	-1	multi-exon	FALSE	canonical	3	377	junction_12	47.8466359016781	168	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTGTTTTGTTGTTTTAT	1914	False	NA	NA	False	NA	NA	NA	87017900	87111508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077
92345	chr8	-	2243	8	NNC	ENSMUSG00000003813.16	novel	2074	9	NA	NA	-9	-27	intron_retention	FALSE	canonical	0	0	junction_3	574.739799156709	15	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGCCCTAATAATGGTTC	NA	False	NA	NA	False	NA	NA	NA	85567279	85561566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85562304_85562383_85562549_85562896_85562961_85564088_85564220_85564317_85564764_85564901_85564958_85565097_85565585_85567122
92347	chr14	-	4678	3	Intergenic	novelGene_653	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	203	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGTTTCTTCCATTAATG	NA	False	NA	NA	False	NA	NA	NA	123971294	123908484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_123909372_123909413_123911472_123969561
92349	chr4	+	2928	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-7	-2	multi-exon	FALSE	non_canonical	0	0	junction_2	72.3729231135513	245	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	147576866	147669653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147639766_147639872_147641551_147641685_147661528_147661587_147665698_147665826_147667290
92350	chr16	+	3514	8	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	1315	junction_2	258.205265600207	3	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
92351	SIRV1	+	760	3	NNC	SIRV1B	novel	702	3	NA	NA	-9582	-819	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	9	2	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACGTGTCATGTCCAACTA	NA	False	NA	NA	False	NA	NA	NA	1000	10787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_+_1319_7598_7806_10552
92352	chr19	+	2898	23	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	9	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	713.623948936601	6	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	762	False	NA	NA	False	NA	NA	NA	10583082	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604061_10607041
92354	chr2	+	3708	5	NNC	ENSMUSG00000078872.10	novel	973	4	NA	NA	-51	2343	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	64.2845237985007	931	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCCTGGTGAGATGGC	NA	False	NA	NA	False	NA	NA	NA	176766061	176781483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176766152_176772059_176772113_176776035_176776163_176776368_176776430_176778106
92356	chr11	-	1127	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6152.71604740541	18	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113076	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102733_33104018_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
92358	chr4	+	4088	10	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	153.316504712585	367	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTTTGGTGTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	132857857	132927063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027_132923325_132924832
92359	chrX	-	869	6	ISM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	1030	2	972	-2	3prime_fragment	FALSE	canonical	3	14744	junction_4	846.047185445351	560	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTTGGTTTGCTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	101231970	101228548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899
92360	chr12	-	1428	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	43	1	-12	-1	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	1191	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	111638729	111635795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
92361	chrX	-	911	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	63	1	5	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232937	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
92362	chr7	-	1494	9	FSM	ENSMUSG00000030695.17	ENSMUST00000106348.8	1460	9	-33	-1	-33	0	multi-exon	FALSE	canonical	3	300	junction_8	6626.46755325754	134	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126399652	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459
92364	chr4	+	2732	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43736	11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	109.024034047544	1	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAGCCAATTGAGAAAAATT	NA	False	NA	NA	False	NA	NA	NA	145508070	145556523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145508381_145510590_145510684_145516045_145516132_145552740_145552806_145554256_145554411_145554499
92365	chr9	-	4733	23	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.624896685675796	81	49	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTGGGGTGCAGGGGCGC	6404	False	NA	NA	False	NA	NA	NA	72656911	72569719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569897_72577235_72577399_72578511_72578593_72584606_72584691_72628571_72628699_72628776_72628944_72632298_72632364_72633691_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648968_72649932_72650041_72650819_72650917_72653686_72653759_72654404
92366	chr2	-	1596	11	NNC	ENSMUSG00000027566.16	novel	914	7	NA	NA	-205554	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	2323.01593623462	284	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAGAACCTGTCGTCAT	NA	False	NA	NA	False	NA	NA	NA	179889780	179678161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070_179684152_179764209_179764394_179773077_179773137_179889104_179889255_179889421
92367	chr16	+	4289	3	FSM	ENSMUSG00000022686.15	ENSMUST00000119468.2	2229	3	71	-2131	71	2	multi-exon	FALSE	canonical	3	9	junction_1	50.5	17	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGCGTTACTTGGGTG	NA	False	NA	NA	False	NA	NA	NA	19579874	19591505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_19580045_19583857_19583965_19587493
92368	chr6	+	896	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	53	1	0	-1	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	78	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATTTGCTTCCTCTCAC	NA	False	NA	NA	False	NA	NA	NA	86986870	87005440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
92370	chr17	+	940	3	FSM	ENSMUSG00000024406.17	ENSMUST00000174782.2	688	3	381	-633	381	-5	multi-exon	FALSE	canonical	3	3795	junction_2	159	49	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATAGCTGAATTTTGTT	6220	False	NA	NA	False	NA	NA	NA	35820098	35821664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35820121_35820304_35820436_35820877
92371	chr13	+	4731	4	Fusion	ENSMUSG00000113626.2_ENSMUSG00000113836.2	novel	419	3	NA	NA	32	2364	multi-exon	FALSE	canonical	3	11	junction_1	131.993265821489	524	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTTAATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	61952111	62201164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_61952220_62194994_62195122_62195306_62195368_62196729
92372	chr1	-	7516	42	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	5040	0	intron_retention	FALSE	non_canonical	0	0	junction_5	480.493237557501	2	102	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGTGGACGTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	71687280	71624681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632363_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167
92373	chrX	+	5155	1	Intergenic	novelGene_3947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	207	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	63977046	63982201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63977000_63982200
92374	chr5	-	1091	5	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	49	-4	intron_retention	FALSE	canonical	3	8565	junction_1	2097.26279946029	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTGTGTGTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	65548280	65545711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65545785_65545904_65546495_65546820_65546954_65547730_65547827_65548081
92375	chr9	-	1592	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5329.25784128418	25	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8143	False	NA	-37	True	NA	NA	NA	78387963	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387326_78387522_78387703_78387792
92376	chrX	-	932	2	Genic_Genomic	ENSMUSG00000081221.5	novel	999	1	NA	NA	-73	178	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CACCCACAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79238531	79237281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_79237386_79237703
92377	chr11	+	7310	30	Antisense	novelGene_ENSMUSG00000020422.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	168	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGCCTCCGGTCTGTCGG	NA	False	NA	NA	False	NA	NA	NA	8381673	8555161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_8383026_8383084_8384639_8385822_8385914_8387102_8387277_8393939_8394013_8394945_8395023_8395644_8395743_8398692_8398822_8400069_8400159_8400856_8401498_8403080_8403251_8428224_8428306_8428392_8428511_8429504_8429661_8442087_8443338_8468198_8468303_8469121_8469189_8469440_8469567_8480867_8480948_8481703_8481765_8482396_8482506_8487998_8488087_8491166_8491238_8495235_8495352_8497270_8497320_8498929_8499101_8499668_8499721_8529081_8529121_8550554_8550593_8555075
92378	chr11	-	3228	3	Intergenic	novelGene_2295	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	40.5	12	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCAAGACCCGTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	57450923	57433748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433764_57445654_57446486_57448541
92379	chr10	-	4856	10	ISM	ENSMUSG00000047146.18	ENSMUST00000174189.2	14369	13	59392	6650	-25185	1395	3prime_fragment	FALSE	canonical	3	87	junction_3	16.6866546810451	13	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCCTAGAACCAAGC	NA	False	NA	NA	False	NA	NA	NA	62675505	62647005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954
92381	chr5	-	2852	14	NNC	ENSMUSG00000019295.9	novel	2828	4	NA	NA	-13772	-2553	intron_retention	FALSE	non_canonical	0	0	junction_1	0	154	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACTCTGACTCCCAGGGT	NA	False	NA	NA	False	NA	NA	NA	33829532	33815454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_33816069_33818562_33818728_33818861_33818990_33821164_33821245_33821608_33822198_33824034_33824086_33824401_33824510_33825304_33825396_33825475_33825579_33826004_33826082_33826160_33826205_33826820_33826990_33828745_33828855_33829008
92383	chr1	+	2242	1	FSM	ENSMUSG00000026698.9	ENSMUST00000193784.2	4207	1	145	1820	71	-716	mono-exon	FALSE	NA	NA	NA	NA	NA	106	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATATCCATTGCATTGTC	NA	False	NA	NA	False	NA	NA	NA	161796941	161799183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_161796900_161799200
92384	chr13	-	2578	4	NNC	ENSMUSG00000078994.10	novel	2056	4	NA	NA	2394	507	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	13.735598518691	41	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAATGTTTCTCTTCTTA	7669	False	NA	NA	False	NA	NA	NA	67545468	67536915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67539184_67544162_67544259_67544748_67544876_67545381
92385	chr13	+	476	4	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	-32653	-12	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	62.9408893769031	47	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACATAAAAAAGATCCT	NA	False	NA	NA	False	NA	NA	NA	61919417	61974314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61919514_61928416_61928544_61928736_61928798_61974122
92387	chr6	+	1779	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	562	100	-16	93	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGTTATTTGCTTGGTGT	5172	False	NA	NA	False	NA	NA	NA	85429057	85445357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
92388	chr9	+	1392	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	283	522	-27	-522	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1629	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGATGTAGTATTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	108183610	108214611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
92389	chr13	+	3803	5	FSM	ENSMUSG00000019132.12	ENSMUST00000019276.12	5849	5	224	1822	-139	1715	multi-exon	FALSE	canonical	3	109	junction_1	16.0370664399696	348	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTACATATTTAATGAGC	NA	False	NA	NA	False	NA	NA	NA	24985863	24998358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_24987493_24988764_24988942_24989844_24989968_24993868_24994004_24996619
92390	chr1	-	676	2	Genic_Genomic	ENSMUSG00000100862.2	novel	678	1	NA	NA	-161	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	24653893	24653054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24653353_24653515
92391	chr13	+	3386	21	NNC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-15	-2010	intron_retention	FALSE	non_canonical	0	0	junction_2	111.957346788855	4	26	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGATGGAAGTTTACAAAACA	NA	False	NA	NA	False	NA	NA	NA	55782824	55827059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55783009_55785838_55785974_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
92392	chr11	-	8004	17	FSM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	0	20	0	-20	multi-exon	FALSE	canonical	3	176	junction_3	32.1266414950271	445	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTCTTTGATAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	98084119	98043000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
92393	chr7	-	1016	3	Genic_Genomic	ENSMUSG00000108366.2	novel	795	1	NA	NA	-392	32712	multi-exon	FALSE	non_canonical	0	0	junction_1	0	126	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCTAAAATTGAATGGCT	NA	False	NA	NA	False	NA	NA	NA	16454227	16420328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_-_16420336_16452992_16453839_16454064
92394	chr17	-	4147	10	NNC	ENSMUSG00000005371.16	novel	3753	23	NA	NA	10100	15704	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	41	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACATGATGAAGGCTGACG	7081	False	NA	-24	True	NA	NA	NA	88298310	88282582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_88282832_88287616_88287817_88290870_88291048_88291879_88294408_88295611_88295880_88296568_88296688_88296852_88296943_88297619_88297776_88297857_88298058_88298150
92395	chr12	-	2637	18	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-4	-5	combination_of_known_junctions	FALSE	canonical	3	128	junction_17	37.6249935336646	4	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	84664148	84649431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
92396	SIRV1	-	1468	7	NNC	SIRV1A	novel	1561	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	90	junction_4	2281.85307857939	12	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10787	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7605_7698_7815_10282_10367_10444
92398	chr11	-	2159	6	Fusion	ENSMUSG00000020743.16_ENSMUSG00000020744.14	novel	1372	6	NA	NA	251	0	intron_retention	FALSE	canonical	1	1	junction_3	153.221930545206	20	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	5903	False	NA	NA	False	NA	NA	NA	115508480	115498743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_115500262_115500364_115500475_115502728_115502861_115506286_115506418_115507346_115507478_115508343
92399	chr11	+	3972	22	NIC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	152.518375533191	8	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	6241634	6306642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
92400	chr17	-	1325	8	NIC	ENSMUSG00000067148.16	novel	1314	9	NA	NA	-8	-14	intron_retention	FALSE	canonical	3	702	junction_7	54.3368180511002	385	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGTTCTTTTCAGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	46558902	46554859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_46555147_46555231_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
92403	chr5	-	2677	12	NNC	ENSMUSG00000029467.16	novel	4486	20	NA	NA	34718	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	485.278790111655	1	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAAATAACTGTCTTGT	9553	False	NA	NA	False	NA	NA	NA	122604962	122594398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_122595309_122595365_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599838_122599916_122600049_122604012_122604145_122604890
92404	chrX	-	4763	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	29	5746	-28	2950	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	275	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAGGGAAAAGCCTTAAG	NA	False	NA	NA	False	NA	NA	NA	73129246	73075943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
92405	chr4	-	4036	4	Antisense	novelGene_ENSMUSG00000067919.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	127	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTAACACACAGAATCCTTT	NA	False	NA	NA	False	NA	NA	NA	147116206	147061781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147064447_147065655_147066491_147099330_147099522_147115861
92406	chr9	-	10542	48	FSM	ENSMUSG00000049313.9	ENSMUST00000060989.9	10715	48	170	3	170	-3	multi-exon	TRUE	canonical	3	333	junction_27	73.2507244219374	515	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTCCAGAGCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	42035423	41876018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_41879967_41880939_41881153_41885232_41885426_41887653_41887761_41888731_41888907_41890625_41890791_41891921_41892042_41894201_41894387_41895731_41895832_41896853_41896937_41898761_41898835_41900000_41900106_41900649_41900763_41902607_41902778_41902914_41903042_41903599_41903732_41907466_41907617_41911539_41911696_41912766_41912902_41913849_41913982_41915281_41915414_41917101_41917210_41919474_41919601_41925750_41925871_41929411_41929535_41933631_41933746_41935591_41935766_41942174_41942314_41942964_41943212_41944860_41944953_41946738_41946871_41948344_41948518_41952288_41952375_41952859_41952989_41955202_41955390_41957778_41957958_41968566_41968656_41975010_41975085_41975282_41975401_41979092_41979286_41982367_41982538_41983540_41983643_41993083_41993265_42001240_42001309_42003604_42003767_42010440_42010567_42017723_42017841_42035124
92407	chr4	+	2745	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	16	-282	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.443251190051	10	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGCATTTTGTATATT	942	False	NA	NA	False	NA	NA	NA	145237376	145265476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145239546_145239644_145257399_145257486_145261385_145261513_145263160
92408	chr14	+	4343	8	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	14	-116	intron_retention	FALSE	non_canonical	0	0	junction_7	189.533153634214	32	87	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGCTTCAATTCCCAAGA	NA	False	NA	NA	False	NA	NA	NA	52517035	52533742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529502_52530932
92409	chrX	+	1643	3	NIC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	0	0	intron_retention	FALSE	canonical	3	11014	junction_2	796	94	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059306	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_36059495_36060495_36061530_36062039
92410	chrM	+	2101	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1149	5	-1149	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	47	False	NA	30	True	NA	NA	NA	1601	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1600_3700
92411	chr2	-	1534	4	Antisense	novelGene_ENSMUSG00000027523.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	3.2659863237109	59	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTTTAAAAAAAAAAAAAACT	507	False	NA	NA	False	NA	NA	NA	174169198	174163275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_174163991_174165456_174165759_174167686_174167944_174168938
92412	chr17	-	3843	4	NIC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	-2	312	intron_retention	FALSE	canonical	3	1697	junction_2	76.4852927038918	5	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACATACAGCCTGTGTGTA	4815	False	NA	NA	False	NA	NA	NA	25179621	25161131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25164603_25167611_25167755_25174991_25175141_25179541
92413	chr4	+	4504	22	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	212.531486262768	46	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390690	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130470992_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082_130508018_130508614
92415	chr5	+	2509	10	NNC	ENSMUSG00000029622.17	novel	3105	10	NA	NA	8	441	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	579.89586123419	9	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGCTCTTGTTAATCTC	8083	False	NA	NA	False	NA	NA	NA	145051075	145065339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063984_145064061_145064537_145064630
92416	chr4	+	3469	6	ISM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	-115	13	-115	-13	intron_retention	FALSE	canonical	3	807	junction_5	25.8255687255867	16	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAAGATGCTATGGTGGC	NA	False	NA	NA	False	NA	NA	NA	108691682	108719311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471
92418	chr12	+	1881	2	ISM	ENSMUSG00000021264.13	ENSMUST00000126912.2	715	4	7686	-949	7686	949	3prime_fragment	FALSE	canonical	3	91	junction_1	0	1	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTACGGCAGAAAGAGCT	NA	False	NA	NA	False	NA	NA	NA	108779850	108782439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_108780691_108781398
92419	chr13	+	8126	24	NNC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	0	-303	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	59.7436552934794	4	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAGCCTGTCTGTGGAATT	NA	False	NA	NA	False	NA	NA	NA	55357594	55463265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386648_55394344_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
92420	chr15	+	1554	7	FSM	ENSMUSG00000022339.10	ENSMUST00000226165.2	1931	7	170	207	19	-5	multi-exon	FALSE	canonical	2	3	junction_1	30.3076814612328	119	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAATATTTTGTATATCC	NA	False	NA	NA	False	NA	NA	NA	44483005	44504417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_44483304_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
92421	chr10	-	2424	15	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-7	1	intron_retention	FALSE	canonical	3	1936	junction_7	236.17259556934	9	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899675	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
92422	chrM	-	1499	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1425	-5	1425	mono-exon	FALSE	NA	NA	NA	NA	NA	25	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTCGAATTAAAATACTTA	9245	False	NA	NA	False	NA	NA	NA	6943	5444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5400_6900
92423	chr8	+	4353	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	24	-766	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	569.956279024979	12	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAAATAGGTGTGGCACCA	NA	False	NA	NA	False	NA	NA	NA	20016489	20045122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20040764_20040983_20041811
92424	chr5	-	3665	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	32	-1295	-3	1257	multi-exon	FALSE	canonical	3	396	junction_3	47.2513937876549	314	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTTTAGTTTTTAATTT	NA	False	NA	NA	False	NA	NA	NA	8472684	8445715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
92425	chr2	-	1332	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11262	176	multi-exon	TRUE	non_canonical	0	0	junction_1	0	67	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426103	11413665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414737_11425842
92426	chr11	-	2092	15	NIC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_12	142.244346396026	4	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	NA	False	NA	NA	NA	84020427	83969745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84011907_84012015_84017813_84017922_84020362
92428	chr5	+	1070	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	149	1158	16	-1158	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	55	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTGAATCATCCCTTGC	491	False	NA	NA	False	NA	NA	NA	129097281	129100229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
92429	chr7	-	3889	23	Antisense	novelGene_ENSMUSG00000033790.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	192	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTTCTCGCGAGAGTTC	NA	False	NA	NA	False	NA	NA	NA	55481411	55443905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_55444088_55445642_55445699_55445785_55445891_55448574_55448676_55449209_55449290_55450375_55450511_55454326_55454443_55455041_55455132_55455799_55455895_55456330_55456576_55458256_55458462_55463180_55463295_55464605_55464875_55466203_55466402_55466983_55467174_55468459_55468644_55471525_55471610_55471723_55471846_55473266_55473446_55475326_55475452_55475978_55476070_55479078_55479178_55480587
92430	chrX	-	2302	11	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-32	528	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	179.292386899165	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGCTCAAGTTTCATTGT	NA	False	NA	NA	False	NA	NA	NA	156275094	156228163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156229260_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243411_156244169_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
92431	chr6	+	1781	1	Intergenic	novelGene_4223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCCCACCCTGGAAATCA	2430	False	NA	NA	False	NA	NA	NA	113048912	113050693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_113048900_113050700
92432	chr13	+	4546	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-21	2786	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	120.070645871504	490	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTTAATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	62277678	62324019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317574_62319128_62320925_62321008_62321979_62322536
92433	chr17	-	2647	14	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	30	-246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	255.029595683631	68	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCCAAGGCCTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	7050153	7005685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006097_7006337_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
92435	chr11	+	3909	4	NIC	ENSMUSG00000069844.13	novel	2186	6	NA	NA	-110	10	intron_retention	FALSE	canonical	3	288	junction_1	14.3836326735943	3	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAGAGTAAGAA	NA	False	NA	NA	False	NA	NA	NA	66944490	66956167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_66946755_66947340_66947434_66949152_66949269_66954731
92436	chr11	-	764	3	Antisense	novelGene_ENSMUSG00000035530.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAAGAAATAATCCGGAG	NA	False	NA	NA	False	NA	NA	NA	100212639	100211490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_100211654_100211771_100211874_100212140
92438	chr11	-	1348	6	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.799040975458	62	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8235	False	NA	NA	False	NA	NA	NA	102907952	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885144_102885497_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
92441	chr12	-	2377	4	FSM	ENSMUSG00000021131.15	ENSMUST00000021559.14	1293	4	205	-1289	-25	1289	multi-exon	FALSE	canonical	3	8000	junction_3	570.898122843881	3	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACTTAGATATAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	80690910	80679506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80690537
92442	chr4	+	4564	10	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	13	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	153.316504712585	6	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTCTTTGTAGTCACT	NA	False	NA	NA	False	NA	NA	NA	132857863	132927041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027_132924969_132925972
92443	chr17	+	1602	9	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	793.314723171075	2	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACAACCGTGTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	35460769	35472654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462427_35465751_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
92444	chr17	+	3708	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	590.347130402952	707	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	504	False	NA	NA	False	NA	NA	NA	56610404	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619421_56619803_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
92445	chr16	+	2641	9	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	8	intron_retention	FALSE	canonical	3	563	junction_3	605.920580604422	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTTATATAGGTGGTC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
92448	chrM	+	783	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	826	-64	826	64	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAATAAGATATTAGTAAAA	-3	True	NA	15	True	NA	NA	NA	6153	6936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6200_6900
92450	chr4	+	4586	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	2	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	23.7900597340309	97	44	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206902	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146209452_146209546_146223583_146223715_146225375_146225469_146250678_146250737_146251579_146251707_146253158_146253297_146253542_146254863_146304057_146305533_146392973_146393416_146552596
92451	chr17	-	2159	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	285	1277	multi-exon	FALSE	canonical	3	36	junction_5	75.1094439563266	56	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCTGCTGCCAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	37299652	37278809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546_37298823_37299396
92452	chr17	+	8237	13	NNC	ENSMUSG00000039218.18	novel	8564	14	NA	NA	256	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	56.4040483180655	32	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGGTCTGTAGTCTTT	NA	False	NA	NA	False	NA	NA	NA	24027327	24043711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24030706_24031401_24031595_24034095_24040595_24040631_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
92453	chr11	+	1168	5	Antisense	novelGene_ENSMUSG00000020738.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	254	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCGGTGGACGAGGCAG	8622	False	NA	NA	False	NA	NA	NA	115412377	115427043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_115412562_115413935_115414596_115421171_115421243_115425376_115425512_115426925
92454	chr16	+	2267	11	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_8	706.189981520554	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5701	False	NA	NA	False	NA	NA	NA	22926155	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930566_22930647_22931100_22931212_22931916
92455	chr6	-	4434	8	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAAAAGCGCCTGCTTCA	7871	False	NA	NA	False	NA	NA	NA	67264103	67244030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67244391_67248178_67248330_67248867_67249012_67249122_67249213_67249802_67249921_67254742_67254921_67258629_67258804_67260884
92456	chr2	+	5360	21	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	-7355	1624	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	116.22644922736	2	74	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATATGTATTGATGTT	3542	False	NA	NA	False	NA	NA	NA	32089039	32122798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32089104_32090837_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106156_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32120622
92457	chr7	-	2499	8	ISM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	19989	104	6809	-104	3prime_fragment	FALSE	canonical	3	986	junction_3	41.1507928854602	2	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTCTAACCGGACCTT	NA	False	NA	NA	False	NA	NA	NA	25434193	25420693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983
92458	chr6	-	2374	10	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	91	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1282.85195396915	2	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8576	False	NA	NA	False	NA	NA	NA	145021819	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144985137_144985362_144993017_144993090_145021614
92459	chr12	+	7770	46	NNC	ENSMUSG00000018707.14	novel	14342	77	NA	NA	-4195	-21	intron_retention	FALSE	canonical	0	0	junction_26	135.521707978218	502	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCGCCTCTTGCCGCTCTG	1270	False	NA	NA	False	NA	NA	NA	110602762	110633358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_110602973_110603539_110603779_110603929_110604087_110605172_110605401_110606167_110606399_110606579_110606721_110606932_110607167_110607252_110607460_110607535_110607658_110608444_110608611_110609556_110609721_110612627_110612758_110614694_110614829_110615433_110615549_110615648_110615811_110615895_110616111_110616207_110616413_110617924_110618099_110618184_110618305_110618507_110618629_110620583_110620780_110621217_110621336_110621849_110622066_110622718_110622932_110623026_110623155_110623476_110623635_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
92460	chr6	+	2662	13	FSM	ENSMUSG00000051855.16	ENSMUST00000124665.3	2665	13	0	3	0	0	multi-exon	FALSE	canonical	1	1	junction_1	120.876888701779	858	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	0	True	NA	NA	False	NA	NA	NA	30738051	30748461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_30738335_30740238_30740343_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
92461	chrM	+	1145	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	-1	0	1	mono-exon	FALSE	NA	NA	NA	NA	NA	143	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTGATAGTATAAACATTA	-2	True	NA	87	True	NA	NA	NA	14144	15289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
92462	chr19	+	2943	16	NNC	ENSMUSG00000040385.8	novel	1473	7	NA	NA	-9	6158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1846.95449020513	17	8	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGTCCCAGCAGCTACTA	3407	False	NA	NA	False	NA	NA	NA	4242193	4251577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244606_4244690_4244770_4244906_4244980_4246082_4246179_4246384_4247113_4247254_4247474_4247590_4247671_4247782_4250271_4250370_4250462_4250578_4250926_4251057_4251327_4251399_4251481
92463	chr16	-	564	1	Intergenic	novelGene_3746	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	277	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
92464	chr2	+	3156	12	NIC	ENSMUSG00000027282.18	novel	2596	13	NA	NA	2	-7	intron_retention	FALSE	canonical	3	2037	junction_4	260.957011753796	15	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATGCACCATGCTTAGC	230	False	NA	NA	False	NA	NA	NA	90677632	90696977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90691794_90693933_90694010_90695527
92465	chr11	+	3529	2	Intergenic	novelGene_2196	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	70	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATCCTAGCAGATAATGG	NA	False	NA	NA	False	NA	NA	NA	4614361	4618043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_4615671_4615823
92466	chr11	+	1166	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	0	-172	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
92467	chr14	-	3395	21	Antisense	novelGene_ENSMUSG00000002325.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	262	12	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCAGAGAGGGCGGGACT	NA	False	NA	NA	False	NA	NA	NA	55841128	55829200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55829488_55829623_55829770_55829914_55830068_55830283_55830350_55830462_55830531_55831749_55831928_55832377_55832757_55832924_55833215_55833460_55833711_55833796_55833988_55834109_55834315_55836093_55836265_55836356_55836457_55836546_55836640_55838502_55838619_55838733_55838855_55839095_55839211_55839335_55839394_55840057_55840157_55840712_55840879_55840985
92468	chr9	-	1624	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	63	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4740.55454432866	71	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7163	False	NA	NA	False	NA	NA	NA	78388943	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386060_78386261_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
92469	chr15	+	2609	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCTGATCTGGCTGCTCA	75	False	NA	NA	False	NA	NA	NA	36771192	36793812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793724
92470	chr5	+	2705	23	Genic_Genomic	ENSMUSG00000072962.4	novel	2072	1	NA	NA	-95991	-827	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	7	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCTCGCCTCTAAGCTG	NA	False	NA	NA	False	NA	NA	NA	44161792	44259028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_44161992_44162268_44162323_44163506_44163575_44164363_44164445_44168535_44168594_44170220_44170311_44171437_44171510_44172099_44172249_44173909_44173992_44175633_44175737_44178147_44178274_44184024_44184181_44186954_44187112_44190285_44190349_44191687_44191764_44194765_44194986_44201660_44201748_44202860_44202926_44204839_44204963_44213221_44213426_44220467_44220531_44251740_44252110_44258988
92471	chrX	+	5747	11	NIC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-6	1519	intron_retention	FALSE	canonical	3	2711	junction_3	176.520707000624	11	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTAGTTTTGTCAGAACT	NA	False	NA	NA	False	NA	NA	NA	161543391	161563607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161560879_161561343
92472	chr13	+	2427	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-8	519	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	113.706859951368	44	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62277738	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62320561_62321214
92473	chr11	-	1692	6	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGCGCGACGGATGGAAG	NA	False	NA	NA	False	NA	NA	NA	75656404	75623832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642906_75646398_75646507_75647642_75647844_75650114_75650253_75655443
92474	chrX	+	2862	3	Antisense	novelGene_ENSMUSG00000031393.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	27	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTTACCACAGCCCTCT	NA	False	NA	NA	False	NA	NA	NA	73077679	73129201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_73080103_73080588_73080944_73129117
92475	chr12	+	2134	4	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-10197	-507	intron_retention	FALSE	canonical	3	10	junction_1	60.256857608814	303	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAGAGAAATTCTA	NA	False	NA	NA	False	NA	NA	NA	17942192	17954169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17942310_17950611_17950788_17950987_17951049_17952389
92476	chr7	+	652	8	Antisense	novelGene_ENSMUSG00000065219.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	39	4	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGAAAGGAGGAGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	44775345	44778152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44775459_44775539_44775662_44775901_44775964_44776134_44776221_44776416_44776517_44776632_44776704_44776923_44776995_44778125
92477	chr6	-	390	3	FSM	ENSMUSG00000057841.6	ENSMUST00000203816.2	906	3	516	0	516	0	multi-exon	FALSE	canonical	3	17944	junction_1	6	9	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	-22	True	NA	NA	NA	115784793	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762
92478	chr7	+	1362	6	NNC	ENSMUSG00000002778.15	novel	1599	5	NA	NA	28	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	113.146984051719	1	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTTTGCTGTTCCCTG	4025	False	NA	NA	False	NA	NA	NA	45522276	45533150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_45522341_45522391_45522526_45523182_45523284_45523466_45523626_45530923_45531191_45532513
92479	chr13	-	2485	6	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113623.2	novel	2310	4	NA	NA	-21	0	multi-exon	FALSE	canonical	2	5	junction_3	57.3410847473258	5	28	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62564878	62516141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519709_62555228_62555290_62555482_62555610_62564751
92480	chr11	-	3229	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	64	486	64	-486	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	351	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTGGCTTGTA	8200	False	NA	NA	False	NA	NA	NA	50216436	50185779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
92481	chr7	+	3605	5	Fusion	ENSMUSG00000053877.13_ENSMUSG00000106715.4	novel	1054	3	NA	NA	-3567	-39	intron_retention	FALSE	canonical	1	1	junction_2	52.9828981842254	26	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTGTTTTGTAATAAA	NA	False	NA	NA	False	NA	NA	NA	127156994	127164403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_127157022_127157139_127159865_127160723_127160958_127162293_127162465_127163955
92482	chr16	-	3822	2	Intergenic	novelGene_3850	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	158	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTTTGTTGCGTCT	NA	False	NA	NA	False	NA	NA	NA	82008776	82004571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_82008145_82008527
92483	chr11	+	2241	20	NNC	ENSMUSG00000034274.12	novel	2235	20	NA	NA	-10	-2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	67.0694847861058	11	19	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTCTGTTTGTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	4845309	4878863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871946_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
92484	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	19	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
92485	chr18	+	6233	34	NNC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	13	34307	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	390.210418619106	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCACTTCCCACCGTGTC	NA	False	NA	NA	False	NA	NA	NA	9957918	10029796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320_9996249_9997172_9997281_9997716_9997775_10000494_10000623_10001769_10001864_10002367_10002434_10004895_10005015_10005633_10005716_10007766_10007850_10009953_10010083_10012212_10012269_10016534_10016645_10017990_10018098_10024505_10024682_10029640
92486	chr3	+	6545	17	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	2033	-470	at_least_one_novel_splicesite	FALSE	canonical	3	203	junction_1	41.3407618912617	401	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGTTCCTTGTAGCACTG	NA	False	NA	NA	False	NA	NA	NA	116655248	116701356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116655359_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
92487	chr8	-	2978	8	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-22	-3	intron_retention	FALSE	canonical	3	23	junction_6	576.935358738971	5	75	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCCTTTTACTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	95564915	95549191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95549836_95550280_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559176_95559329_95564879
92488	chr6	-	1872	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	48	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2484.71404144795	1395	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	8	True	NA	NA	False	NA	NA	NA	7693206	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680157_7681279_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
92490	chr13	+	3101	26	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	1	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	225.341887806062	1	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAACCTGTCTGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	6598195	6630068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605415_6606703_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
92491	chr11	+	7520	41	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	-39000	-42	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	48.1420813841695	2	22	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAATAATGAATAAATAAA	2840	False	NA	NA	False	NA	NA	NA	78097571	78146280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78098594_78098873_78099062_78099675_78099847_78099929_78100008_78100251_78100362_78102621_78102748_78102908_78103022_78103493_78103734_78104092_78104287_78107028_78107170_78108664_78108812_78109994_78110141_78110707_78110917_78111946_78112075_78112935_78113103_78113172_78113311_78113594_78113731_78113978_78114056_78115190_78115317_78115428_78115561_78116131_78116326_78116486_78116644_78116771_78116926_78117007_78117140_78117504_78117597_78117713_78117865_78119453_78119598_78119779_78119868_78120220_78120337_78120988_78121096_78121755_78122030_78122598_78122688_78122846_78123040_78123330_78123408_78123500_78123660_78124370_78124510_78136022_78136125_78136356_78136997_78141841_78142039_78145676_78145738_78145815
92493	chr17	+	7698	21	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-13	9124	intron_retention	FALSE	non_canonical	0	0	junction_14	332.138566715761	16	90	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGCCAGGCC	NA	False	NA	NA	False	NA	NA	NA	6320731	6367713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355305_6361221_6361568_6361646_6361983_6362107_6365190_6365232_6367643
92494	chr10	-	1649	6	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	193	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	312.210441849724	15	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATTTTGTTTAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	5755407	5749195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749328_5749389_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
92495	chr11	-	2943	19	NNC	ENSMUSG00000020923.18	novel	4580	20	NA	NA	134	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	349.703401664614	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACGTTTCCTACCGATCTC	9141	False	NA	NA	False	NA	NA	NA	102209788	102196832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198120_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200228_102200379_102200479_102200582_102201016_102201159_102201268_102201400_102202201_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
92496	chr6	-	1869	11	NIC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	8	4	combination_of_known_splicesites	FALSE	canonical	3	68	junction_6	2583.32646988336	2461	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	1575	False	NA	NA	False	NA	NA	NA	7693246	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
92497	chr2	-	3100	3	NIC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	84	-10	intron_retention	FALSE	canonical	3	2404	junction_1	61.5	26	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATGTAATTACGTTGTG	8309	False	NA	NA	False	NA	NA	NA	132095150	132091091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132093679_132093822_132093921_132094735
92498	chr13	-	3409	8	NNC	ENSMUSG00000094870.9	novel	2966	8	NA	NA	-791	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_7	56.5021220479228	257	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	120253216	120226721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252746
92499	chr4	+	5034	22	NNC	ENSMUSG00000028580.16	novel	4017	22	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	179.964357771274	49	58	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390698	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082_130508618_130508659
92500	chrM	-	1583	2	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTGAAGAAGGTAGATGG	-66	True	NA	NA	False	NA	NA	NA	11544	9899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10514_10575
92501	chr11	+	2503	10	NIC	ENSMUSG00000020888.17	novel	2968	15	NA	NA	-11	48	intron_retention	FALSE	canonical	3	488	junction_4	30.7286009050241	182	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCAAGATCACCATCCC	7146	False	NA	NA	False	NA	NA	NA	69891431	69898943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897257_69897339_69898347_69898640_69898770_69898845
92502	chr17	+	2196	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	281	-628	281	628	mono-exon	FALSE	NA	NA	NA	NA	NA	76	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAATACCAAAAAAAA	NA	False	NA	49	True	NA	NA	NA	40157524	40159720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157500_40159700
92503	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	16	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
92505	chrM	+	2590	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1008	0	1008	mono-exon	FALSE	NA	NA	NA	NA	NA	1139	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGGAGTACCACCATACAT	-3	True	NA	22	True	NA	NA	NA	1093	3683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
92506	chr8	+	1734	1	Intergenic	novelGene_1767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGTTGGCCTTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	118186506	118188240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_118186500_118188200
92507	chr17	+	6006	2	ISM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	12716	2077	-3371	4	internal_fragment	FALSE	canonical	3	161	junction_1	0	4	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGCCCCAAGAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	24034910	24041638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24040665_24041386
92508	chr16	+	1606	8	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	0	-195	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	249.170869984795	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATATATCCAAGACAGGGT	NA	False	NA	NA	False	NA	NA	NA	48130839	48139891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48130903_48131937_48132074_48134322_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995_48139290_48139359
92509	chr2	+	6401	4	Antisense	novelGene_ENSMUSG00000078861.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAGGAGCTTGCAAGCTT	NA	False	NA	NA	False	NA	NA	NA	177704078	177720248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177710193_177711346_177711407_177711613_177711742_177720149
92510	chr15	+	1740	10	NNC	ENSMUSG00000022407.11	novel	1932	11	NA	NA	3425	15	intron_retention	FALSE	non_canonical	0	0	junction_8	436.970377841692	3	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTACATTAAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80836402	80853335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80848229_80850292_80850384_80851312_80851410_80851809_80851967_80852862
92511	chr3	+	2651	12	NIC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	3	-11	intron_retention	FALSE	canonical	3	1252	junction_8	68.0004861431334	18	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTAAAATAACCAGTACAA	NA	False	NA	NA	False	NA	NA	NA	90383466	90395675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90394405_90394533_90394625_90394765
92512	chr1	+	8430	14	Intergenic	novelGene_432	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	70	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATGGCGCAGCGCCCCCG	NA	False	NA	NA	False	NA	NA	NA	118762297	118981435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_118768323_118769646_118769928_118772080_118772247_118773415_118773481_118773647_118773797_118776112_118776247_118780986_118781111_118782170_118782381_118783158_118783368_118794301_118794488_118795708_118795914_118818026_118818134_118929771_118929936_118981030
92513	chr6	-	1398	6	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	-344	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1263.46406359659	281	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATGCGTTTCTGAAATG	NA	False	NA	NA	False	NA	NA	NA	83288919	83282690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283333_83283446_83283735_83286459_83286537_83287393_83287502_83288187_83288345_83288793
92514	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
92515	chr7	+	10954	33	Fusion	ENSMUSG00000053877.13_ENSMUSG00000106715.4	novel	9633	31	NA	NA	-3	-1806	intron_retention	TRUE	non_canonical	0	0	junction_31	21.0516477977378	17	164	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTAGTAGAATTCAGTT	NA	False	NA	NA	False	NA	NA	NA	127111170	127162636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128306_127128397_127129354_127129532_127129611_127129971_127130065_127130244_127130506_127130644_127130891_127131062_127131198_127131392_127133719_127133857_127133946_127134134_127137172_127137343_127137674_127137941_127138120_127138409_127138928_127139094_127139827_127140095_127140413_127141880_127148311_127148578_127148704_127148908_127151430_127151601_127151739_127151937_127152033_127152149_127152346_127152467_127156579_127156689_127157623_127160958_127162293
92516	chr15	+	3322	12	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	59	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	244.379159409552	39	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTAATGTTGCAGTTT	NA	False	NA	-35	True	NA	NA	NA	101982357	102005606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102003415_102003485_102003687
92517	chr17	+	3718	10	NIC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	8	3	intron_retention	FALSE	canonical	3	59	junction_1	736.668493377993	126	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460761	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
92518	chr3	+	2813	6	NNC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	9	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	494.880025864855	6	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAACAGAAGTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	87826878	87830968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_87827840_87828039_87828592_87828920_87829534_87829694_87829799_87830241_87830373_87830516
92519	chr7	+	1249	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	2	337	0	-148	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	5	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGTACTTGTGTAGTGG	NA	False	NA	NA	False	NA	NA	NA	46495264	46504714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
92520	chr13	+	4352	4	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-39	1317	intron_retention	FALSE	canonical	0	0	junction_3	60.642852468824	16	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACCTTGACTTAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	66261254	66271967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66269602_66269686
92521	chrM	+	1340	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	38	0	38	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	107	False	NA	NA	False	NA	NA	NA	10204	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10200_11500
92522	chr7	-	742	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	6330.97773988008	16	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8423	False	NA	NA	False	NA	NA	NA	99132857	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129162_99129209_99129271_99130903_99130999_99131467_99131523_99131776_99131908_99132798
92523	chr4	-	8687	20	FSM	ENSMUSG00000038172.15	ENSMUST00000102823.10	8831	20	-16	160	-16	-160	multi-exon	FALSE	canonical	3	157	junction_3	31.1407314036548	368	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTTCCTTTTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	83242508	83138696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
92524	chr4	+	4660	24	NNC	ENSMUSG00000028423.16	novel	4594	24	NA	NA	68	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	209.328894353699	3	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGCACTTAATTTTTACT	-18	True	NA	NA	False	NA	NA	NA	40970973	41025975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40971065_40976205_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
92525	chr6	-	2536	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	209.031459901933	5	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3030	False	NA	NA	False	NA	NA	NA	71885752	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875418_71878222_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
92526	chr17	+	1331	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	29	2	29	-2	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	118	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3065	False	NA	NA	False	NA	NA	NA	35816943	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
92527	chr9	+	1838	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	2	-2	2	2	multi-exon	FALSE	canonical	3	72	junction_1	0	191	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGACTCTGGTGGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	21867052	21869562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_21867301_21867972
92528	chr1	+	2824	13	NNC	ENSMUSG00000033488.12	novel	1618	10	NA	NA	-7285	672	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20.9775011752009	179	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACAGTTCTTATAAAA	NA	False	NA	NA	False	NA	NA	NA	157278861	157317302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_157279010_157280076_157280140_157283287_157283418_157285956_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
92530	chr3	-	5477	11	NNC	ENSMUSG00000004896.17	novel	2492	8	NA	NA	-30	3094	intron_retention	TRUE	non_canonical	0	0	junction_1	46.3099341394479	168	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACTGGGAAAGGCATGTC	9413	False	NA	NA	False	NA	NA	NA	87837481	87826813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_87827832_87828031_87829354_87829435_87829532_87829692_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
92531	chr16	+	6954	11	FSM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	11	-3056	0	3056	multi-exon	FALSE	canonical	3	156	junction_4	11.4908659377786	118	102	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTCATATTTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	91282136	91307385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91282305_91286583_91286708_91289518_91289698_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
92532	chr2	+	8078	28	NNC	ENSMUSG00000027263.13	novel	2887	19	NA	NA	4433	72632	intron_retention	TRUE	non_canonical	0	0	junction_1	0	176	16	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACGTCACGCAATATCGG	NA	False	NA	NA	False	NA	NA	NA	121026860	121101883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121029091_121029458_121029605_121030088_121030288_121030783_121030881_121033024_121033244_121034816_121035033_121035402_121035592_121038178_121038611_121038835_121038990_121039566_121039833_121041749_121041903_121046146_121046652_121051637_121051732_121054185_121054244_121058125_121058329_121059067_121059189_121066053_121067350_121074373_121074578_121077981_121078076_121078643_121078775_121082350_121082514_121084080_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100790_121101003_121101189_121101751
92533	chr1	-	7488	16	ISM	ENSMUSG00000094410.9	ENSMUST00000179598.4	10156	17	3213	767	3213	-767	intron_retention	FALSE	canonical	3	293	junction_13	50.7709453219938	38	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAACTCCTTGCCTAGTA	NA	False	NA	NA	False	NA	NA	NA	133585843	133548444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710
92534	chr5	+	1067	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	12	-1157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5618.27911819981	9	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	487	False	NA	NA	False	NA	NA	NA	129097277	129100230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099446_129099610_129099837
92535	chr13	+	2093	12	NNC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	4	137	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	190.091104734476	93	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGTGGTCCCAGAGTG	NA	False	NA	NA	False	NA	NA	NA	54769600	54809536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_54769717_54777202_54777318_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
92537	chr17	+	3637	4	NNC	ENSMUSG00000071172.14	novel	4010	4	NA	NA	58	-17	intron_retention	FALSE	canonical	0	0	junction_3	847.695437970239	469	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGTTGTTTAACTTGA	NA	False	NA	NA	False	NA	NA	NA	29251720	29261067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29259735_29259949
92538	chr2	+	3788	10	Antisense	novelGene_ENSMUSG00000038369.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGGTCAAAGTAGCAACCA	1750	False	NA	NA	False	NA	NA	NA	155249628	155282676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_155250369_155253442_155253567_155256731_155257847_155260795_155260944_155262885_155263792_155264732_155264858_155274733_155274858_155275851_155276009_155279779_155280058_155282605
92539	chr4	+	4334	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-49	1360	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	79.6131270582936	522	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAGAGGGTCTCATGTA	NA	False	NA	NA	False	NA	NA	NA	146033818	146064551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146043550_146043631_146054375_146054480_146058453_146058581_146060726
92540	chr13	+	2693	4	Fusion	ENSMUSG00000051037.16_ENSMUSG00000058900.6	novel	2591	4	NA	NA	-11	-13	multi-exon	FALSE	canonical	1	1	junction_1	2.49443825784929	33	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTAACTCTCACTTGGGT	NA	False	NA	NA	False	NA	NA	NA	67321234	67357349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_67321318_67346596_67346724_67347212_67347309_67354962
92541	chr6	-	4962	14	NNC	ENSMUSG00000029826.15	novel	4944	13	NA	NA	-601	-5	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_9	31.7456608412633	9	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCATTTGGTCTGTTTATG	9723	False	NA	NA	False	NA	NA	NA	38332139	38282225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38284392_38288112_38288247_38288524_38288656_38289328_38289420_38293255_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309424_38310124_38313346_38313600_38317154_38317291_38330849_38331470_38332029
92542	chr10	-	3885	9	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	-17	217	-1	-201	intron_retention	FALSE	canonical	3	1924	junction_2	86.9107839971542	30	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCTAATAAAATGCTAACC	NA	False	NA	NA	False	NA	NA	NA	127358272	127353208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839
92544	chr1	-	6784	3	Intergenic	novelGene_346	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	189	62	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTTCAGAACGGTTTCC	NA	False	NA	NA	False	NA	NA	NA	16905290	16898339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_16898436_16898480_16903716_16903837
92545	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	91	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
92546	chr12	-	1520	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	73	604	24	-343	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	3	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCGTAGCTCTGGTATT	NA	False	NA	NA	False	NA	NA	NA	21467565	21440675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
92547	chr11	+	3842	4	Antisense	novelGene_ENSMUSG00000098613.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGCTGCGCTTACTGGC	3604	False	NA	NA	False	NA	NA	NA	102884875	102907915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102888266_102890468_102890674_102890975_102891182_102907874
92548	chr4	-	3411	1	Intergenic	novelGene_1894	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	81825668	81822257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_81822300_81825700
92549	chr4	+	4622	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	2914	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	35.5422284050958	909	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	145159006	145180372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145160315_145160385_145173065_145173342_145176036_145176243_145176326
92550	chr10	-	2435	1	ISM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	28553	14	1920	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	223	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTTCGCCTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	81234468	81232033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_81232000_81234500
92551	SIRV12003	+	3332	1	FSM	SIRV12003A	SIRV12003	12000	1	8668	0	8668	0	mono-exon	FALSE	NA	NA	NA	NA	NA	352	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	8668	12000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV12003_+_8700_12000
92552	chr15	+	2933	2	FSM	ENSMUSG00000058655.10	ENSMUST00000229254.2	437	2	-545	-1951	-545	-23	multi-exon	FALSE	canonical	3	938	junction_1	0	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCCAGTCTTTAAAGT	2964	False	NA	NA	False	NA	NA	NA	102002453	102005585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102003213_102003411
92553	chr17	+	2712	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	-3356	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTAACGGGAGACTGTGGA	NA	False	NA	NA	False	NA	NA	NA	40153887	40159087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40154735_40157222
92554	chr11	-	958	10	FSM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	2	6	-2	-6	multi-exon	FALSE	canonical	3	29	junction_1	6470.30156337304	82	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTTAAGTTTCCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	33113074	33105333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33105432_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
92555	chrX	+	5105	23	NIC	ENSMUSG00000001173.16	novel	5253	24	NA	NA	16	-3	combination_of_known_splicesites	TRUE	non_canonical	0	0	junction_1	25.9866860380401	3	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCTCGGTCACTACGC	NA	False	NA	NA	False	NA	NA	NA	47001279	47054637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
92556	chr2	-	4423	6	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-71393	3168	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	123.980643650531	23	126	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	176969607	176881981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176937155_176937189_176969550
92557	chr1	+	2183	11	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-18	-246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	208.888486997249	3	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177786	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184164_167184925_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
92558	chr14	-	1526	1	Antisense	novelGene_ENSMUSG00000039367.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	132	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAGAGTAC	NA	False	NA	NA	False	NA	NA	NA	20744911	20743385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_20743400_20744900
92559	chr15	+	1773	10	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	611	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5622.09719228565	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAATGGAATGACAACTG	NA	False	NA	NA	False	NA	NA	NA	103149531	103153378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103149624_103149872_103150020_103150329_103150541_103150632_103150730_103150829_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
92560	chr8	+	4216	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	21	-760	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	534.365745533899	17	30	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGGCACCATTCTTT	NA	False	NA	NA	False	NA	NA	NA	20016486	20045128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041906
92561	chr3	+	2087	13	FSM	ENSMUSG00000001016.13	ENSMUST00000196769.5	1702	13	31	-416	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	69.553137160655	3719	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	90383463	90395686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394405_90394533_90394625_90394765
92563	chr2	+	4321	12	FSM	ENSMUSG00000026643.17	ENSMUST00000102989.10	2162	12	-3	-2156	-3	-5	multi-exon	TRUE	canonical	3	6	junction_2	78.3416969921083	2	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGTTTTGAGTGTTTTC	1029	False	NA	NA	False	NA	NA	NA	3285290	3329909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_3285444_3305848_3305985_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
92564	chrX	+	1121	3	Intergenic	novelGene_3943	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4.5	146	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGACCGTTTTCTCGTTG	NA	False	NA	NA	False	NA	NA	NA	63977041	63982200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63977270_63977673_63977765_63981398
92565	chr8	-	4001	3	Antisense	novelGene_ENSMUSG00000031548.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	215	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGCGGCGGCCAACGCCA	NA	False	NA	NA	False	NA	NA	NA	23939635	23901875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_23902349_23907349_23907423_23936180
92566	chr16	+	5222	19	Fusion	ENSMUSG00000022516.11_ENSMUSG00000022517.18	novel	3138	17	NA	NA	0	2	intron_retention	FALSE	canonical	3	137	junction_15	106.652603239573	1605	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTTCTGAGTGCCATG	2927	False	NA	NA	False	NA	NA	NA	4704115	4758885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759_4757158_4757241_4757503_4758059
92567	chr16	+	3700	6	NNC	ENSMUSG00000080717.11	novel	1230	5	NA	NA	-299	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	59.0199966113181	10	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	97798215	97817956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97812743_97812913_97814086_97817461
92568	chrX	-	3268	10	ISM	ENSMUSG00000031386.15	ENSMUST00000114372.3	8262	26	10982	6405	2060	-2007	internal_fragment	FALSE	canonical	3	303	junction_8	20.2417488143127	1	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGTAAGTAGAAGTGTCC	NA	False	NA	NA	False	NA	NA	NA	72998975	72992807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619
92569	chr8	+	530	1	Antisense	novelGene_ENSMUSG00000090137.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGAGTAAGCCGCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	70963121	70963651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_70963100_70963700
92570	chr10	+	4355	11	Antisense	novelGene_ENSMUSG00000036112.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	58	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTCGATGGTCCGGACGC	3255	False	NA	NA	False	NA	NA	NA	93694350	93725656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_93697464_93698237_93698354_93698790_93698898_93701270_93701366_93704728_93704825_93706028_93706164_93707352_93707511_93715400_93715507_93715936_93716001_93722855_93722966_93725401
92571	chr17	+	3848	7	Antisense	novelGene_ENSMUSG00000061665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTTTTGGGCGGGACTT	NA	False	NA	NA	False	NA	NA	NA	43104108	43127415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_43107259_43109483_43109549_43116049_43116226_43118803_43118907_43119621_43119735_43126835_43126979_43127317
92572	chr9	+	4538	15	NNC	ENSMUSG00000009741.16	novel	3997	14	NA	NA	6465	68995	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	307	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTCCTCTAGCCCCG	1365	False	NA	NA	False	NA	NA	NA	113804757	113875265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_113808008_113808524_113808742_113813055_113813113_113813611_113813654_113814340_113814402_113815473_113815605_113818187_113818267_113818380_113818505_113819685_113819782_113819876_113819945_113829564_113829660_113832216_113832292_113832508_113832565_113847056_113847117_113875138
92573	chr11	-	3295	2	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	7313	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	23	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGAGTGTGTCTGTGCTTC	NA	False	NA	NA	False	NA	NA	NA	95851348	95847988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95849190_95849254
92574	chr12	+	2216	5	NNC	ENSMUSG00000020561.9	novel	4325	4	NA	NA	3	1682	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	224.878161456376	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATACCCCAATACAGTTGT	NA	False	NA	NA	False	NA	NA	NA	33479636	33489396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691_33487852_33487962
92575	chr1	+	1061	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-5	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8590.17096453848	21	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454442	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686_86457940_86458084
92576	chrX	-	2439	16	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-3929	-2	intron_retention	FALSE	non_canonical	0	0	junction_10	673.349088924575	2856	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGCCCTGTTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	72834432	72822570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380_72830538_72830805_72830911_72832438_72832555_72833400_72833478_72833633_72833725_72833962_72834029_72834257
92577	chrX	-	6057	2	Antisense	novelGene_ENSMUSG00000082629.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	208	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	72351300	72313322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_72315297_72347217
92578	chr10	+	2990	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	57	809	57	-809	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	160	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGACATTTTAATTTCAG	NA	False	NA	NA	False	NA	NA	NA	29189552	29222656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
92579	chr4	-	2910	21	NNC	ENSMUSG00000028431.12	novel	6160	37	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	82.8022342693722	10	12	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATTGACTCAGTGGTAA	-4	True	NA	NA	False	NA	NA	NA	56802297	56751011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56759800_56759915_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769216_56770980_56771079_56771432_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56775016_56775037_56798657_56798811_56799974_56800138_56802158
92580	chr11	-	2343	16	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	232.281955103419	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAAATTTGACTTTGCT	NA	False	NA	NA	False	NA	NA	NA	70860788	70833910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836151_70840903_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
92581	chr4	+	2390	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	3044	5	NA	NA	-13	0	multi-exon	FALSE	canonical	0	0	junction_3	14.5838095160352	421	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	5006	False	NA	NA	False	NA	NA	NA	145241440	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145241589_145343687_145343746_145348721_145349286_145349370_145349913_145350837
92582	chr11	+	2995	7	NIC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	1224	482	intron_retention	FALSE	canonical	3	103	junction_2	24.6283486160878	600	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAAACCACGAGCCAAAAT	9000	False	NA	NA	False	NA	NA	NA	58199221	58205935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
92583	chr15	+	7023	1	FSM	ENSMUSG00000115318.2	ENSMUST00000227474.2	2906	1	4	-4121	4	4121	mono-exon	FALSE	NA	NA	NA	NA	NA	210	71	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATGC	NA	False	NA	NA	False	NA	NA	NA	33831597	33838620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_33831600_33838600
92584	chr7	-	2440	8	NIC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	21	1	intron_retention	TRUE	canonical	3	14	junction_7	115.018543314208	17	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGCCGGAGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	126817622	126813617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126817230_126817312_126817404_126817496
92585	chr17	-	4448	17	NNC	ENSMUSG00000024393.15	novel	6888	31	NA	NA	-494	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.8647905318821	6	38	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGGGAAAGTCATGGGT	NA	False	NA	NA	False	NA	NA	NA	35384367	35368053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35368268_35374795_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35384049
92587	chr2	-	5101	1	NIC	ENSMUSG00000051149.16	novel	4917	5	NA	NA	20602	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	14	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTGTGCTTAATGTAA	NA	False	NA	NA	False	NA	NA	NA	168028027	168022926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_168022900_168028000
92588	chr16	-	6163	14	NNC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	11	12162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.1089089797348	326	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCCAGGCCGGACCTTC	NA	False	NA	NA	False	NA	NA	NA	44566711	44544968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_44545544_44547386_44547543_44549601_44549685_44549944_44550075_44550477_44550556_44551690_44552059_44552418_44552478_44554898_44555155_44556072_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
92589	chr19	+	2854	2	FSM	ENSMUSG00000071661.8	ENSMUST00000172175.3	2004	2	-42	-808	-42	808	multi-exon	FALSE	canonical	3	20	junction_1	0	120	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAATGTATTCTTATTT	5386	False	NA	NA	False	NA	NA	NA	8779876	8783018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8780050_8780337
92590	chr7	+	1263	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-20	-11	-20	11	mono-exon	FALSE	NA	NA	NA	NA	NA	11	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396374	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
92591	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
92593	chr10	+	3153	2	Genic_Genomic	ENSMUSG00000112523.2	novel	871	1	NA	NA	-2	4286	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATCCTCTTGCAATTT	NA	False	NA	NA	False	NA	NA	NA	106018879	106024038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_106020635_106022640
92594	chr3	-	1267	11	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	14	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	223.655650498708	77	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGTGTAGGGACCTGT	NA	False	NA	NA	False	NA	NA	NA	88821224	88816948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818039_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
92595	chr1	+	3533	24	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	15	-252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	454.418850283947	1	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3162	False	NA	NA	False	NA	NA	NA	180396508	180428565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415613_180415683_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
92596	chr12	+	3299	8	NIC	ENSMUSG00000007411.17	novel	3321	16	NA	NA	1279	116	intron_retention	FALSE	canonical	3	91	junction_7	151.398649334821	59	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTGCCTCTGTCTTGTTT	8558	False	NA	NA	False	NA	NA	NA	111592221	111622244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111621703
92598	chrX	-	2744	16	NNC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	-3929	0	intron_retention	FALSE	non_canonical	0	0	junction_10	682.423022928024	105	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72834432	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380_72830538_72830805_72830911_72832438_72832555_72833400_72833478_72833633_72833725_72833962_72834029_72834257
92599	chr16	-	4006	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-6	1	combination_of_known_junctions	FALSE	canonical	3	157	junction_17	327.192188774521	1517	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGCCAGTAAGTGAATTC	NA	False	NA	NA	False	NA	NA	NA	16176829	16130108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16163861_16164010_16176627
92601	chr5	-	2016	10	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-65	-259	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	190.607799770454	11	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACAGAGCTGTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	34093659	34055518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059103_34077835_34077998_34079189_34079362_34093369
92602	chr9	-	2250	3	NNC	ENSMUSG00000039048.16	novel	2232	11	NA	NA	-116	0	intron_retention	FALSE	canonical	3	32	junction_2	107	2370	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	1100	False	NA	NA	False	NA	NA	NA	35118101	35115503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35116706_35116884_35116987_35117155
92603	chr2	-	4129	5	Antisense	novelGene_ENSMUSG00000078864.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	345	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTACAGAGAGGAACTCG	NA	False	NA	NA	False	NA	NA	NA	177415175	177292140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_177292230_177404637_177404693_177409835_177409961_177410165_177410228_177411377
92604	chr5	-	5272	20	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAGCGCGGCAAAGCCGA	NA	False	NA	NA	False	NA	NA	NA	75817208	75735653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75735776_75767682_75767957_75769927_75770210_75771464_75771602_75775976_75776151_75781503_75781695_75783646_75783765_75797953_75798067_75799622_75799805_75801150_75801257_75801355_75801875_75801986_75802096_75806493_75806644_75808404_75808492_75809041_75809173_75810204_75810330_75813209_75813317_75813412_75813517_75813879_75813986_75815073
92605	chrX	-	3585	6	NIC	ENSMUSG00000031167.17	novel	1055	7	NA	NA	0	62	intron_retention	FALSE	canonical	2	12	junction_3	468.809385571577	82	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAACACCCAGTGAGAGATT	6561	False	NA	NA	False	NA	NA	NA	8011936	8006960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009569_8009896_8009991_8010086_8010685_8010811_8010919_8011193_8011312_8011876
92606	chr4	-	5174	5	Antisense	novelGene_ENSMUSG00000028676.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1290	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCACACTCGCACAGACC	NA	False	NA	NA	False	NA	NA	NA	135595488	135583455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_135583601_135585613_135585721_135589084_135589189_135590350_135590514_135590833
92607	chr19	+	2007	1	Genic_Genomic	ENSMUSG00000071661.8	novel	NA	NA	NA	NA	292	7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGGTGTTGGCTGGTTT	5720	False	NA	NA	False	NA	NA	NA	8780210	8782217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_8780200_8782200
92608	chr2	+	4709	24	ISM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	14	13	14	-13	intron_retention	FALSE	canonical	3	726	junction_12	68.5901225755855	95	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAACTCAGAATGGTGGT	NA	False	NA	NA	False	NA	NA	NA	166747992	166788296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296
92609	chr2	+	3614	15	Antisense	novelGene_ENSMUSG00000027184.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	165	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCGGGCGGGCGGGCAGG	NA	False	NA	NA	False	NA	NA	NA	103595358	103627380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103597207_103598748_103598814_103599146_103599248_103599778_103599975_103602041_103602195_103603014_103603163_103603317_103603433_103604081_103604106_103606455_103606508_103608310_103608446_103609508_103609590_103609675_103609917_103613300_103613391_103613490_103613550_103627074
92611	chr9	+	6002	21	NNC	ENSMUSG00000042557.15	novel	4961	22	NA	NA	-2	1540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	76.319378273149	103	126	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGGTCAGGGTAAGATT	NA	False	NA	NA	False	NA	NA	NA	56993862	57037190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431_57034950_57035334
92612	chr2	+	1691	1	ISM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	53318	5	53244	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	31	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	152122076	152123767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_152122100_152123800
92613	chr11	-	4074	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-18	-148	combination_of_known_junctions	FALSE	canonical	3	238	junction_18	63.0911793643156	251	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTAGGGAATCTGGTCG	5298	False	NA	NA	False	NA	NA	NA	60101236	60090062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60101161
92614	chr12	-	3796	8	NNC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	0	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	127.922648821984	2	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAGTGGTAATTAAAT	NA	False	NA	NA	False	NA	NA	NA	87490606	87472971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87473280_87473377_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87490411
92615	chr7	-	3928	8	NNC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	12	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	297.178569282538	6	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCCTAAAGCACAAATATAGT	NA	False	NA	NA	False	NA	NA	NA	118454895	118441453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118442803_118442883_118442976_118443923_118445318_118447671_118447798_118449843_118449913_118451625_118452098_118452187_118452564_118454845
92616	chr2	+	2623	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	188	13	188	-13	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	37	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTTTTGGACTGGGGT	NA	False	NA	NA	False	NA	NA	NA	29952052	29962576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
92617	chr15	+	2399	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	49	-872	25	-306	multi-exon	FALSE	canonical	3	59	junction_1	146.176678378513	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTACCTGCCCCTCCAG	2172	False	NA	NA	False	NA	NA	NA	102379136	102408188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
92618	chr17	+	2137	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	-28	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17341648	17367100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17341913_17362997_17363116_17364925_17366130_17366465_17366734_17366817
92620	chr2	-	3625	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	10	-47	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	385.854603637081	941	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGTCTTAATGTGT	NA	False	NA	NA	False	NA	NA	NA	94268471	94242073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94244132_94248600_94248679_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
92622	chr11	+	5305	15	NIC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	26	-34	intron_retention	FALSE	canonical	3	694	junction_11	84.6770575872394	101	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATATGTATTATGTATAAA	NA	False	NA	NA	False	NA	NA	NA	4110380	4132507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4128226_4129140_4129243_4129353_4129426_4130033
92623	chr5	-	2365	5	ISM	ENSMUSG00000029598.13	ENSMUST00000031597.7	4208	12	15911	623	15887	-623	3prime_fragment	FALSE	canonical	3	256	junction_2	75.0745462856753	176	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTACAATGGAAAAGTGC	8506	False	NA	NA	False	NA	NA	NA	120625779	120621969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_120623904_120624104_120624268_120624712_120624866_120625494_120625567_120625736
92624	chr6	-	1766	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	69	-63	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	884.031004165878	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGGTTTTTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	83294466	83282735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290418_83294433
92625	chrX	+	3744	1	Intergenic	novelGene_3954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGAGGATTTTACCTTT	NA	False	NA	NA	False	NA	NA	NA	72212423	72216167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_72212400_72216200
92626	chr16	-	564	1	Intergenic	novelGene_3747	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
92627	chr6	+	3051	5	Antisense	novelGene_ENSMUSG00002075316.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTTCCGGTTCACGCC	NA	False	NA	NA	False	NA	NA	NA	35486591	35516743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_35488903_35488980_35489252_35498833_35498918_35499615_35499730_35516472
92628	chr2	+	5302	23	NNC	ENSMUSG00000027678.18	novel	5757	23	NA	NA	23	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	63.9818059107689	2	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTGTAGCCCACTCA	NA	False	NA	NA	False	NA	NA	NA	165834579	165913382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165897113_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
92629	chr16	-	2089	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	18	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAATAAAAATAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	45975440	45973351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_45973400_45975400
92630	chr2	-	3741	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	4	-47	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	347.427111252326	985	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGTCTTAATGTGT	NA	False	NA	NA	False	NA	NA	NA	94268477	94242073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94244132_94248549_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
92631	chr9	-	2668	3	NNC	ENSMUSG00000110803.2	novel	1387	4	NA	NA	51	-105960	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	18	35	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59848309	59839499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_59842055_59847284_59847361_59848272
92632	chr11	-	3790	19	FSM	ENSMUSG00000020538.16	ENSMUST00000020846.8	4299	19	0	509	0	-509	multi-exon	FALSE	canonical	3	238	junction_18	63.0911793643156	262	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCAGTTTTGTTTATCTG	3801	False	NA	NA	False	NA	NA	NA	60111430	60090423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60111278
92633	chr14	+	6569	9	Antisense	novelGene_ENSMUSG00000060373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	7.6065350193107	59	107	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCCCGAGCTCCTCTGCC	7002	False	NA	NA	False	NA	NA	NA	52311906	52341461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52312620_52312713_52312870_52313069_52313186_52314861_52316591_52316805_52316989_52317305_52319361_52321571_52321849_52334778_52336004_52341346
92634	chr7	+	1585	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	2	1	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	2	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495264	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
92635	chr16	-	564	1	Intergenic	novelGene_3748	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	108	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
92636	chr13	+	2055	6	NNC	ENSMUSG00000074867.5	novel	449	4	NA	NA	-14	6077	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	12.687001221723	16	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCGTTAAAAAAATGATACT	NA	False	NA	NA	False	NA	NA	NA	62367355	62390035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62367452_62381070_62381198_62381382_62381444_62382774_62384355_62389713_62389734_62389864
92637	chr2	+	2530	4	Antisense	novelGene_ENSMUSG00000095362.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGGAAGAGCCGCCTCC	7897	False	NA	NA	False	NA	NA	NA	177472666	177482147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177474887_177476040_177476103_177476310_177476442_177482030
92638	chr4	+	2500	7	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242729	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.6404776212465	839	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147395004	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147534439_147534577_147578832_147578927_147639766_147639810_147665698_147665826_147667290_147667431_147667838
92639	chr4	-	6900	35	NNC	ENSMUSG00000041936.19	novel	7193	35	NA	NA	4896	-5	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_34	104.741104452539	396	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTAAAATAGGGACTGTG	NA	False	NA	NA	False	NA	NA	NA	156277049	156249755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459_156257588_156257999_156258138_156258241_156258548_156258633_156258740_156258812_156258938_156259027_156259172_156259312_156259478_156259556_156259674_156260675_156260782_156260860_156261010_156261090_156261292_156261412_156261608_156261679_156261899_156262885_156263093_156263239_156263465_156263554_156263780_156263849_156264066_156269544_156269593_156276982
92640	chr2	+	1289	1	FSM	ENSMUSG00000064193.9	ENSMUST00000138679.2	1302	1	-9	22	-9	-22	mono-exon	FALSE	NA	NA	NA	NA	NA	3	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGGAACCCCCTGGCCA	NA	False	NA	NA	False	NA	NA	NA	80667475	80668764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_80667500_80668800
92641	chr3	+	3561	1	ISM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	42913	0	42913	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCATCTTGTGGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	63926439	63930000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_63926400_63930000
92642	chr5	+	3741	26	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	48	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCTCCGCGGCCCAGG	NA	False	NA	NA	False	NA	NA	NA	100509507	100564032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100509898_100511743_100511804_100513587_100513854_100516152_100516197_100521295_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533987_100534063_100536389_100536470_100536925_100536966_100538617_100538687_100540247_100540490_100540722_100540875_100541061_100541221_100543657_100543760_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555136_100555887_100555973_100563961
92643	chrX	-	4422	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-11	-7	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	141.043288332602	28	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAATTGATACTCTGGTG	NA	False	NA	NA	False	NA	NA	NA	59224460	59101325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59111797_59111992_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
92644	chr11	+	3231	5	NNC	ENSMUSG00000001105.16	novel	1167	5	NA	NA	-3	11215	intron_retention	FALSE	non_canonical	0	0	junction_3	130.637619007696	28	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAGCAGAGCCAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	78427265	78443778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78427403_78429335_78429565_78429659_78429789_78430783_78433500_78443758
92645	chr2	-	3733	5	NNC	ENSMUSG00000074731.4	novel	2734	4	NA	NA	-2	4257	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.972892172189	210	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAGCATTATAGCATCTA	NA	False	NA	NA	False	NA	NA	NA	150327013	150308653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_150310352_150313611_150315345_150316415_150316477_150316675_150316803_150326899
92646	chr16	-	3033	7	NIC	ENSMUSG00000004462.8	novel	2980	8	NA	NA	21	-435	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	32.7193452800565	42	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCACATAGAGCATTATTA	NA	False	NA	NA	False	NA	NA	NA	22676269	22636597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22675504
92648	chr11	+	1356	6	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	10	11	intron_retention	FALSE	canonical	3	6	junction_3	454.674125061016	32	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGGTGTCTTGTAAATAG	NA	False	NA	NA	False	NA	NA	NA	101518807	101526909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101519279_101521063_101521187_101521645_101521806_101524546_101524727_101525613_101525700_101526573
92649	chr3	-	4023	24	FSM	ENSMUSG00000027699.20	ENSMUST00000108298.9	4024	24	-2	3	-2	1	multi-exon	FALSE	canonical	3	28	junction_21	160.816383688852	822	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCTTTTATGTGTCCTGT	1808	False	NA	NA	False	NA	NA	NA	27208029	27151373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27203141_27203222_27204177_27204330_27207851
92650	chr1	-	2219	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	206	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1852.58460508779	66	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4661	False	NA	NA	False	NA	NA	NA	55126977	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123689_55123945_55125924_55126101_55126937
92651	chr2	-	3315	16	NNC	ENSMUSG00000027620.17	novel	2127	18	NA	NA	-1974	-9	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_13	998.815565223797	1	44	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAGGCCACAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	156016855	155989177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156012250_156012402_156014747_156014943_156016016
92652	chr4	-	1363	6	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	-6	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	184.230942026577	10	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9086	False	NA	NA	False	NA	NA	NA	155976232	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155973639_155974152_155974364_155974955_155975127_155975209_155975360_155975508_155975873_155976083
92653	chr17	-	4157	16	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	23	-358	intron_retention	FALSE	non_canonical	0	0	junction_1	190.043316699699	468	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAACAGCAGGTCTGTTT	NA	False	NA	NA	False	NA	NA	NA	28841402	28806979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808220_28808449_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
92654	chr16	+	4090	3	FSM	ENSMUSG00000022686.15	ENSMUST00000131557.8	444	3	1	-3647	0	22	multi-exon	FALSE	canonical	3	81	junction_1	14.5	152	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTGTGGGCATCATTCT	NA	False	NA	NA	False	NA	NA	NA	19579336	19591235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_19579578_19583857_19583965_19587493
92655	chr2	-	9698	8	NNC	ENSMUSG00000083817.2	novel	2135	3	NA	NA	-48952	178748	intron_retention	TRUE	non_canonical	0	0	junction_1	25.8946058522793	103	131	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGTAATAGAAACAAAAAG	NA	False	NA	NA	False	NA	NA	NA	176969708	176738517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176738937_176911292_176912384_176912438_176918442_176918525_176918976_176919057_176920428_176920629_176920803_176925294_176925438_176969659
92656	chr8	-	999	4	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	7	-542	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3594.30169388529	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCATTGAGTATTCATT	NA	False	NA	NA	False	NA	NA	NA	46664060	46660375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661576_46662058_46662554_46663979
92657	chr18	+	2021	8	NIC	ENSMUSG00000024234.8	novel	2110	9	NA	NA	0	0	intron_retention	FALSE	canonical	1	3	junction_7	77.1222194616693	12	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTAGTATCTATTTTCT	-1	True	NA	NA	False	NA	NA	NA	4375602	4396785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4396104
92658	chr11	-	1499	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-7	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	892.227936123948	13	3	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGAACCTTGTTCACTTG	9578	False	NA	NA	False	NA	NA	NA	5828219	5822186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824156_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
92659	chr3	+	6291	3	Intergenic	novelGene_3085	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	392	55	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTGTGATAAAAACTGCAT	NA	False	NA	NA	False	NA	NA	NA	16422973	16637404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_16423531_16545589_16546396_16632476
92660	chr1	-	2913	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	68	50	16	-12	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	1	88	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACATGTGGACTTCATGC	NA	False	NA	NA	False	NA	NA	NA	20890468	20873241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
92661	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	910	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
92662	chrX	-	5247	13	NNC	ENSMUSG00000031333.8	novel	5667	16	NA	NA	12	79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	83.9802804234423	2	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAATTACTAGCACTCTGG	9873	False	NA	NA	False	NA	NA	NA	103457440	103324183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103347893_103388563_103388609_103457262
92663	chr10	+	6682	29	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	538	-1698	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	146.552491118579	1	197	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCTTGGGAACTCCTCA	NA	False	NA	NA	False	NA	NA	NA	127932786	127963473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127932931_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955733_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959894_127959975_127960132_127960203_127960356_127960761_127961052_127961137_127961271_127961367_127961515_127961886_127962111_127962194_127962339_127962456
92664	chr17	+	3468	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	587.414022964212	715	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	500	False	NA	NA	False	NA	NA	NA	56610400	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629393
92665	chr13	-	3311	12	Antisense	novelGene_ENSMUSG00000035139.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACACTTTGAAAACCAACAA	8222	False	NA	NA	False	NA	NA	NA	51838064	51821430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_51822091_51822558_51823073_51824840_51824966_51827105_51827194_51827921_51828063_51830319_51830488_51831174_51831314_51832867_51833027_51833768_51833988_51836033_51836189_51836477_51836670_51837313
92666	chr13	+	5505	15	ISM	ENSMUSG00000021488.9	ENSMUST00000224973.2	9905	21	58664	295	5021	-295	3prime_fragment	FALSE	canonical	3	160	junction_14	27.5044523297444	4	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGGAATTGAGACCCT	2671	False	NA	NA	False	NA	NA	NA	55416258	55463273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
92667	chr9	+	2439	8	NIC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	2	-5	intron_retention	FALSE	canonical	3	166	junction_4	16.3157617545934	34	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174122	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108174225_108174326_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
92668	chr17	+	1560	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	21	-11	intron_retention	FALSE	canonical	3	382	junction_1	32.0702354216492	879	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACCCCGCTATGGGTTGC	4624	False	NA	NA	False	NA	NA	NA	25459164	25461761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25459339_25459417_25460232_25460661_25460836_25461132_25461197_25461427
92669	chr17	+	3824	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-38	-5	intron_retention	FALSE	non_canonical	0	0	junction_5	592.353550583508	4	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	461	False	NA	NA	False	NA	NA	NA	56610361	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619421_56619803_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
92670	chr3	-	3417	14	NNC	ENSMUSG00000033439.13	novel	3402	12	NA	NA	-8481	468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	133	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGGGCACCGACCGAGCCG	7423	False	NA	NA	False	NA	NA	NA	116416717	116388574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_116388826_116397108_116397170_116398843_116398924_116399311_116399416_116400968_116401141_116402028_116402097_116403910_116404031_116407552_116407745_116411902_116412102_116412210_116412297_116412370_116412551_116412897_116412982_116413706_116413840_116415030
92671	chr2	+	2886	14	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	-1309	-716	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	834.411708575739	4	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCAATGTGCAGAAGGCTG	NA	False	NA	NA	False	NA	NA	NA	162899959	162925892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162900073_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
92672	chr10	-	3683	19	NIC	ENSMUSG00000037012.19	novel	3639	20	NA	NA	387	-24	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	146.937964570423	614	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGTAAACTTTGTACTG	NA	False	NA	NA	False	NA	NA	NA	62175934	62104910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62127753_62127823_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
92673	chr11	-	5781	20	FSM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	12	1138	12	-1138	multi-exon	FALSE	canonical	3	63	junction_1	12.1006856333757	151	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTCAAACTCCTCTCC	NA	False	NA	NA	False	NA	NA	NA	86092007	85950101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_85952872_85955603_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091934
92674	chr15	-	5765	5	FSM	ENSMUSG00000033228.9	ENSMUST00000228072.2	4519	5	-1257	11	-1257	-11	multi-exon	FALSE	canonical	0	0	junction_2	104.145331148352	2	106	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAGCATGACTACTGGTG	NA	False	NA	NA	False	NA	NA	NA	96317830	96309590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952
92675	chr7	+	2905	20	NNC	ENSMUSG00000030978.11	novel	3997	19	NA	NA	-34	244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	221.093943508084	35	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	NA	NA	NA	102091055	102118133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501_102117580_102117672
92676	chr10	+	1777	9	NNC	ENSMUSG00000071072.13	novel	2000	8	NA	NA	-7	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1241.50442382418	19	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCTGTACATTTTCACT	896	False	NA	NA	False	NA	NA	NA	127894872	127913115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935_127912024_127912170
92677	chr19	-	4291	10	FSM	ENSMUSG00000025077.15	ENSMUST00000182059.3	4109	10	-182	0	9	0	multi-exon	FALSE	canonical	3	154	junction_5	33.6088612653799	160	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAGCATATTTGGATGGG	7983	False	NA	NA	False	NA	NA	NA	56536666	56517600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_56518095_56519648_56519791_56525559_56525715_56526728_56526875_56528613_56528755_56529936_56530056_56531064_56531199_56532446_56534079_56535068_56536136_56536405
92678	chrM	+	872	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	272	0	-272	mono-exon	FALSE	NA	NA	NA	NA	NA	14	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGCCTTAATCTTATCTA	-2	True	NA	87	True	NA	NA	NA	14144	15016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15000
92679	chr16	+	2407	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	380	junction_10	578.512886632614	399	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
92680	chr15	+	1743	4	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	-8	intron_retention	FALSE	canonical	3	5295	junction_1	2774.76994041348	35	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788284	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788310_76788502_76788881_76789017_76790172_76790320
92681	chr6	-	2184	8	FSM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	38	-405	-2	2	multi-exon	FALSE	canonical	3	38	junction_7	625.057254520393	25	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATGCCAGGAGATTG	NA	False	NA	NA	False	NA	NA	NA	124942373	124935373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
92683	chr15	+	541	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	535	-74	-535	mono-exon	FALSE	NA	NA	NA	NA	NA	7	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCTGGCCAAGGTCATCC	88	False	NA	NA	False	NA	NA	NA	12574900	12575441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12575400
92684	chr16	-	535	2	Antisense	novelGene_ENSMUSG00000022832.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	5	junction_1	0	10	0	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCAGAATGCCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	34488774	34477898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_34478284_34488624
92685	chr3	+	1003	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	53	3	-6	-3	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	187	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3610	False	NA	NA	False	NA	NA	NA	88486967	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
92686	chr2	-	2785	17	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	183.691657404467	7	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017536	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4995960_4999392_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
92687	chr13	-	1679	9	NIC	ENSMUSG00000069089.9	novel	1159	11	NA	NA	175	-121	combination_of_known_splicesites	FALSE	canonical	3	42	junction_5	240.576358720054	5	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTCATACTATTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	100867233	100839259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100855809_100855879_100857093_100857162_100859187_100859222_100866965
92688	chr16	+	4189	4	FSM	ENSMUSG00000022686.15	ENSMUST00000079780.10	4258	4	91	-22	-74	22	multi-exon	FALSE	canonical	3	73	junction_1	15.8954920234218	166	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTGTGGGCATCATTCT	NA	False	NA	NA	False	NA	NA	NA	19579074	19591235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_19579228_19579390_19579578_19583857_19583965_19587493
92689	chrX	-	1638	2	ISM	ENSMUSG00000031422.17	ENSMUST00000166930.8	1926	4	5531	-10	4859	-1	3prime_fragment	FALSE	canonical	3	2872	junction_1	0	1	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135636373	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_135635251_135636294
92690	chr4	-	5643	6	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	127	107	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAATGATGAAATGGCAG	NA	False	NA	NA	False	NA	NA	NA	145180372	145159010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159219_145159385_145160382_145173062_145173196_145173287_145173339_145176033_145176254_145176337
92691	chr19	-	691	4	Antisense	novelGene_ENSMUSG00000024661.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCATGGTGGCGGCGGGG	2179	False	NA	NA	False	NA	NA	NA	9962455	9960240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_9960347_9961543_9961690_9961921_9962050_9962144
92692	SIRV1	-	1285	6	NNC	SIRV1A	novel	1363	6	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2129.5337893539	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATCGATGCATACTTCC	NA	False	NA	NA	False	NA	NA	NA	10791	1002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6736_7550_7815_10282_10367_10647
92693	chr7	+	6336	4	Antisense	novelGene_ENSMUSG00000119548.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	84	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCTACACTTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	57707361	57905464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_57707752_57707953_57708922_57751795_57754491_57903181
92694	chr9	-	4773	3	NNC	ENSMUSG00000037949.9	novel	2280	2	NA	NA	-147200	-1653	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	208	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCGCCTTTGGGACTGCC	NA	False	NA	NA	False	NA	NA	NA	122270689	122106637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_122106916_122107222_122109526_122268497
92695	chr1	-	948	1	Antisense	novelGene_ENSMUSG00000101188.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGCTTCCATCTGCAGCT	NA	False	NA	NA	False	NA	NA	NA	60744494	60743546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_60743500_60744500
92696	chr18	-	3111	12	NNC	ENSMUSG00000037013.18	novel	3098	11	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	388.678753669041	1087	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	14815832	14758685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14803552_14803711_14812443_14812521_14815723
92697	chr4	-	3982	6	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	17	65106	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.011185910489	726	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAACCCCAGAATCCTG	NA	False	NA	NA	False	NA	NA	NA	146994030	146911046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913241_146913913_146914389_146976181_146977116_146978205_146978333_146982168_146982273_146993882
92698	chr15	+	1023	8	ISM	ENSMUSG00000056851.15	ENSMUST00000231085.2	915	9	4532	-228	-29	-11	3prime_fragment	FALSE	non_canonical	0	0	junction_1	223.874235832058	2	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAGATGGACTGGAG	446	False	NA	NA	False	NA	NA	NA	102391603	102407305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102391724_102392588_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102398186_102398243_102399068_102399239_102406923
92699	chr15	-	1770	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACAAGACCGTTTTCTCG	9802	False	NA	NA	False	NA	NA	NA	22705088	22699825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700618_22704110
92700	chrX	-	5397	20	NNC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	-620	-973	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	80.7728253033112	4	80	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCTGAGCTCCAGGCCG	NA	False	NA	NA	False	NA	NA	NA	73010583	72991773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998704_72998923_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
92701	chr13	+	303	1	Intergenic	novelGene_1495	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	86860945	86861248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_86860900_86861200
92702	chr9	+	1865	8	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	10	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	89.3820052199706	5	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTTACTTGCTATGGT	NA	False	NA	NA	False	NA	NA	NA	108174130	108179487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174219_108174382_108174495_108174910_108174992_108175966_108176099_108176943_108177090_108177732_108177914_108178271_108178428_108178518
92703	chr13	+	6456	45	NNC	ENSMUSG00000033991.10	novel	6976	45	NA	NA	49	-200	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	42.0175275803675	1	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGCTAATTTCTCCAAG	NA	False	NA	NA	False	NA	NA	NA	76246901	76338025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76259852_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277478_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245_76333370_76335718_76335814_76336551
92704	chr12	+	2050	8	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	283.691338447624	2	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAAAAAGTGTGAAGTAC	2865	False	NA	NA	False	NA	NA	NA	109612563	109628141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618347_109624486_109624556_109626160_109626242_109627179
92705	chr16	+	1845	13	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	697.252161265126	4	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6054	False	NA	NA	False	NA	NA	NA	22926508	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916_22932350_22932502
92706	chr6	-	3135	11	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-313	5	combination_of_known_junctions	FALSE	canonical	3	17	junction_5	1231.70940160413	34	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8172	False	NA	NA	False	NA	NA	NA	145022223	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961579_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
92707	chr5	-	1669	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1295	2	362	-2	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	50	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	4023	False	NA	NA	False	NA	NA	NA	142891214	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
92708	chr3	+	6356	18	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	2122	-471	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	86.7537181477356	266	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTTCCTTGTAGCACT	NA	False	NA	NA	False	NA	NA	NA	116655337	116701355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116655359_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717_116698110_116698208
92709	chr3	+	1707	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	9	-22	intron_retention	FALSE	canonical	3	329	junction_1	59.5566956773124	946	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTAAAAAAATTTTTTTC	7081	False	NA	NA	False	NA	NA	NA	108291203	108295473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108294053_108294593_108294712_108294914
92711	chr3	+	2019	10	NNC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	-10	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1570.33682004692	50	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCAGACCGGCTTGACTTT	NA	False	NA	NA	False	NA	NA	NA	89987011	90008204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834_90007271_90007391
92713	chr12	+	3228	4	NIC	ENSMUSG00000020978.11	novel	1905	13	NA	NA	3462	-225	intron_retention	FALSE	canonical	3	606	junction_3	35.8143360495021	8739	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTACCTGTCTATTGTTA	NA	False	NA	NA	False	NA	NA	NA	69352636	69357236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_69354074_69354391_69355820_69356760_69356814_69356926
92714	chr5	+	4362	7	NNC	ENSMUSG00000007812.17	novel	4157	5	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	169.56676823272	464	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGTAGACTCTTTGTTT	1321	False	NA	NA	False	NA	NA	NA	145168554	145184108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859_145173931_145179729_145179835_145180384
92715	chr17	+	8718	5	ISM	ENSMUSG00000090115.8_ENSMUSG00000084880.2	ENSMUST00000024779.15	8252	7	42027	-1439	-3	1439	3prime_fragment	FALSE	canonical	3	71	junction_4	30.9141957682874	338	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATCGGAGGCGGAGCCC	NA	False	NA	NA	False	NA	NA	NA	47983641	47999102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990795_47991606
92716	chr2	+	653	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11384	216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	509	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11413650	11426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414012_11425955
92717	chr3	+	1673	8	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	-24	12312	intron_retention	FALSE	canonical	0	0	junction_7	2291.4715083259	767	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGGACCCAAGGAGCTGA	NA	False	NA	NA	False	NA	NA	NA	88483158	88508038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88483288_88483545_88483911_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495729_88507841
92718	chr16	-	564	1	Intergenic	novelGene_3749	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
92719	chr15	-	1631	4	NNC	ENSMUSG00000033837.6	novel	1365	3	NA	NA	65	396	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.328260785661	1184	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAAGTCTGGTATTGGGG	NA	False	NA	NA	False	NA	NA	NA	76554083	76552028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76552702_76552766_76553341_76553428_76553534_76553804
92720	chr13	+	895	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-13	56	-13	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	102	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAAATAAAGCTTTTTG	7949	False	NA	NA	False	NA	NA	NA	74554514	74555409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
92721	chr3	-	1756	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	35	1779	6	-32	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCCACGCAATAAAGCATC	NA	False	NA	NA	False	NA	NA	NA	108352479	108333959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
92723	chr4	+	4708	4	FSM	ENSMUSG00000038729.25	ENSMUST00000107598.9	6830	4	0	2122	0	-2120	multi-exon	FALSE	canonical	3	16	junction_3	1.69967317119759	107	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTTTATGTTATTA	-5	True	NA	NA	False	NA	NA	NA	57845247	57894862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_57845307_57854561_57857038_57883023_57883203_57892868
92724	chr13	+	726	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-13	-21	multi-exon	FALSE	canonical	0	0	junction_1	0	717	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7949	False	NA	NA	False	NA	NA	NA	74554514	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554759_74554962
92725	chr4	+	3980	4	NIC	ENSMUSG00000038729.25	novel	7211	4	NA	NA	54	-2878	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	3.29983164553722	127	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATGGGGATAGAAAGAGA	37	False	NA	NA	False	NA	NA	NA	57782233	57894104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_57782323_57854561_57857038_57883023_57883203_57892868
92726	chr1	-	961	6	NIC	ENSMUSG00000026035.16	novel	1033	7	NA	NA	-2	-3	combination_of_known_splicesites	FALSE	canonical	3	10	junction_2	75.6370279691105	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACATGTGAGTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	58484595	58470158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_58470490_58473489_58473609_58480001_58480096_58481683_58481759_58483747_58483799_58484304
92728	chr15	+	2960	12	NIC	ENSMUSG00000022253.18	novel	4135	13	NA	NA	-38	305	combination_of_known_junctions	FALSE	canonical	3	231	junction_7	43.3900243705397	229	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTTTTCTTATTTCC	36	True	NA	NA	False	NA	NA	NA	9071722	9110253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
92729	chr11	-	5268	5	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTCTTTTTCGAGGCAT	NA	False	NA	NA	False	NA	NA	NA	57952860	57942470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57942555_57943402_57943557_57946291_57946436_57947877_57947989_57948085
92730	chr2	+	2452	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	3	680	3	-680	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTACCTCAGTCTTTTCT	647	False	NA	NA	False	NA	NA	NA	26279353	26286454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
92731	chr1	+	2623	15	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTATGTAGAACTCCTCA	NA	False	NA	NA	False	NA	NA	NA	20873191	20887562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873878_20875039_20875132_20875486_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882397_20882786_20882918_20883182_20883338_20884621_20884731_20884911_20885151_20886871_20887003_20887465
92732	chrX	-	711	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	-30	-30	-30	30	mono-exon	FALSE	NA	NA	NA	NA	NA	302	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGCCCAAGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	151693181	151692470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693200
92733	chr4	+	1746	2	NIC	ENSMUSG00000028689.15	novel	1335	4	NA	NA	-52	-5	intron_retention	FALSE	canonical	3	73	junction_1	0	43	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCTTCACTCTTCCTCT	5504	False	NA	NA	False	NA	NA	NA	116565653	116567694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116567003_116567297
92734	chr8	+	750	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	30	0	30	0	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	21	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	123829118	123831983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
92735	chr5	-	3265	4	ISM	ENSMUSG00000001687.16	ENSMUST00000201688.4	551	5	24136	-1329	24136	-14	3prime_fragment	FALSE	canonical	3	361	junction_2	19.131126469709	183	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACATTGTAGTGCAT	NA	False	NA	NA	False	NA	NA	NA	148450264	148441458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_148442998_148443255_148443334_148446078_148446166_148448703
92736	chr1	-	2656	6	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	-4	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	943.443183238927	18	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCTCACGAGCTTTGGT	2334	False	NA	NA	False	NA	NA	NA	93729632	93720306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93726193_93726497_93728134_93728473_93728633_93729419
92737	chr11	-	477	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	13	147	13	-94	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	39	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTCCTTCTGATGAATGT	NA	False	NA	NA	False	NA	NA	NA	29497847	29495992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
92738	chr11	+	1341	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	-22	-3	-22	3	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	1297	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACTCCAGTTTGTTAAT	4514	False	NA	NA	False	NA	NA	NA	106146957	106153949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
92740	chr4	-	6439	3	Intergenic	novelGene_2188	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	155	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTACATTTCAAATGTTA	NA	False	NA	NA	False	NA	NA	NA	156516534	156509322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_156510501_156510554_156513858_156514576
92741	chr5	-	1443	5	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_2	1796.95151576218	82	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142889993_142890987_142891232_142891318_142891448_142892406
92742	chr6	-	482	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	28	7	28	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	145	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115785680	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
92743	chr5	-	2657	6	Antisense	novelGene_ENSMUSG00000058013.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	108	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTGCAAAGCAAACAGGCC	NA	False	NA	NA	False	NA	NA	NA	93321100	93304711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_93304872_93309008_93309105_93309981_93310150_93313105_93313250_93315360_93315547_93319197
92744	chr11	-	2951	4	Intergenic	novelGene_2543	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	81.0198878191165	290	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGTCTTGCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	121816166	121795182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121797835_121798775_121798837_121799014_121799142_121816055
92745	chr13	-	7901	20	Intergenic	novelGene_1383	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	95	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGAATACTGTGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	55463267	55394152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55395889_55408154_55408280_55409354_55409637_55411152_55411254_55416258_55416335_55424333_55424453_55425084_55425241_55425344_55425487_55430469_55430593_55437864_55438067_55438941_55439122_55441368_55441522_55443790_55444004_55446374_55446488_55447501_55447774_55449538_55449657_55450651_55450790_55454744_55454854_55458147_55458352_55459928
92746	chr15	-	4006	16	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	-2011	4	at_least_one_novel_splicesite	FALSE	canonical	2	60	junction_15	395.078973821128	2	154	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATCTTCTTTCGTGAGT	NA	False	NA	NA	False	NA	NA	NA	96920214	96892696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96920045
92747	chr10	+	2534	14	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	23847	4903	20250	-4902	internal_fragment	FALSE	canonical	3	370	junction_3	34.4648006697718	4	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGACGTACGAGACAGAC	NA	False	NA	NA	False	NA	NA	NA	127952498	127960269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892_127959525_127959634_127959858_127959975_127960132_127960203
92748	chr7	+	1585	8	ISM	ENSMUSG00000051048.18	ENSMUST00000208565.2	1215	9	3919	-462	3919	0	3prime_fragment	FALSE	canonical	1	3	junction_5	4.23300925429402	76	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTTCTAACAGCGACTAT	NA	False	NA	NA	False	NA	NA	NA	99954706	99968906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_99954871_99955073_99955251_99959993_99960059_99962412_99962573_99963814_99963878_99966248_99966318_99967188_99967286_99968116
92749	chrX	-	4451	2	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	2446	-16	intron_retention	FALSE	canonical	0	0	junction_1	0	186	55	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATTTGTTCATCCTTG	NA	False	NA	NA	False	NA	NA	NA	49656630	49652017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49656430_49656591
92750	chrX	-	2740	2	Intergenic	novelGene_4016	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	91	junction_1	0	13	97	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAGATGGA	NA	False	NA	NA	False	NA	NA	NA	116231362	116226558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116227411_116229474
92751	chr4	+	4703	5	Antisense	novelGene_ENSMUSG00000007880.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	293	48	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAGCAGCACGGCTGTAG	2375	False	NA	NA	False	NA	NA	NA	133406318	133414020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133409367_133411745_133413077_133413539_133413637_133413714_133413865_133413943
92752	chr19	+	12505	4	NNC	ENSMUSG00000069833.14	novel	18100	5	NA	NA	3948	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	389	96	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTAACCCTGATGTATCG	NA	False	NA	NA	False	NA	NA	NA	8980971	8996547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8981025_8982151_8982979_8983935_8984517_8985503
92753	chr4	+	3954	4	ISM	ENSMUSG00000038729.25	ENSMUST00000107600.8	7231	5	15485	2919	15485	-2919	3prime_fragment	FALSE	canonical	2	4	junction_1	6.48074069840786	31	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGGATGAGTTGTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	57757579	57894063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_57757684_57854561_57857038_57883023_57883203_57892868
92754	chr9	-	1636	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	54	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5026.41413952738	24	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAATCTGTGTTGGTCA	7154	False	NA	NA	False	NA	NA	NA	78388952	78385741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386733_78386914_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
92755	chr11	+	2525	11	NNC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	73	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	402.450990805092	2	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCAGACCCTGGTGCTG	NA	False	NA	NA	False	NA	NA	NA	101207111	101214356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211626_101212662
92756	chr15	-	1209	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	874.988279804889	21	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTGTGTGTATTTA	NA	False	NA	NA	False	NA	NA	NA	51728879	51649958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651435_51653431_51653510_51659783_51659934_51661008_51661111_51662587_51662756_51705863_51706021_51728721
92757	chr17	+	2080	12	Antisense	novelGene_ENSMUSG00000024081.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCATCCTGTCAGCTAGTG	NA	False	NA	NA	False	NA	NA	NA	79229124	79242905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_79229153_79229560_79229750_79229946_79230001_79230664_79230759_79231865_79231945_79233345_79233414_79233511_79233622_79234303_79234352_79236706_79236793_79238735_79238925_79239537_79239773_79242005
92758	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
92759	chr16	-	564	1	Intergenic	novelGene_3750	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
92760	chr13	+	4536	4	NNC	ENSMUSG00000021360.17	novel	3929	3	NA	NA	-389	-1	intron_retention	FALSE	canonical	0	0	junction_1	84.1704619606348	208	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCAGGAATAGTGGATAT	NA	False	NA	NA	False	NA	NA	NA	41040279	41114362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_41041762_41100074_41100298_41107051_41107148_41111627
92761	chr12	+	4205	15	NIC	ENSMUSG00000021109.14	novel	4724	15	NA	NA	97	-380	combination_of_known_junctions	FALSE	canonical	3	216	junction_10	79.3247008394315	278	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGTATTTGCAGTATG	8455	False	NA	NA	False	NA	NA	NA	73954774	73993924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988503_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
92762	chr4	+	3932	4	NIC	ENSMUSG00000028527.19	novel	4186	6	NA	NA	34	-2	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	134.910670033504	2	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGTGATGGAATTTCAT	NA	False	NA	NA	False	NA	NA	NA	101276963	101324190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_101277163_101317696_101317870_101320145_101320265_101320749
92763	chr1	-	4424	28	Antisense	novelGene_ENSMUSG00000041763.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	168	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGAGCGGCGCGAGGACACC	NA	False	NA	NA	False	NA	NA	NA	44042160	43973194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_43973353_43979231_43979397_43988469_43988565_43990263_43990372_43992416_43992540_43993734_43993899_43995628_43995784_43996593_43996669_43999239_43999366_44000022_44000126_44008041_44008178_44009560_44009675_44010721_44010890_44011686_44011849_44012602_44012681_44014577_44014690_44016373_44016528_44017575_44017689_44017894_44017991_44019465_44019563_44020893_44021008_44022220_44022428_44029691_44029821_44030418_44030520_44031419_44031566_44038787_44038994_44040476_44040599_44041263
92765	chr4	+	3030	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2576	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	124.272084638539	300	64	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147533648	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147592042_147592098_147595209_147595337_147596801_147597189_147597943_147598177_147598260_147599176_147599343
92766	chr6	-	4796	14	NNC	ENSMUSG00000040669.15	novel	3612	14	NA	NA	194	-9	at_least_one_novel_splicesite	FALSE	canonical	2	31	junction_13	315.19185478918	3	139	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGTAAAAGGATGAAAGTT	9316	False	NA	NA	False	NA	NA	NA	122316377	122294717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122315236
92767	chr7	-	2937	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.188852574577511	3	7	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGAGGGGGCGGAGACG	9273	False	NA	NA	False	NA	NA	NA	13045351	13012770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016462_13019176_13019251_13020561_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
92769	chr12	-	1477	2	Antisense	novelGene_ENSMUSG00000113361.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	589	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATATTTTTAAAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	110557943	110555714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_110556617_110557368
92770	chr7	+	5252	6	Antisense	novelGene_ENSMUSG00000108731.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	158	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTGAAAAAAAAAAAAGATCA	NA	False	NA	NA	False	NA	NA	NA	26581763	26711421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_26582114_26582168_26582305_26583150_26583521_26583787_26583944_26584042_26585503_26708641
92771	chr2	-	3748	4	FSM	ENSMUSG00000075040.10	ENSMUST00000111333.2	3740	4	0	-8	0	8	multi-exon	FALSE	canonical	3	9	junction_3	6.54896090146283	77	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACAAAAGCCAGTGTG	NA	False	NA	NA	False	NA	NA	NA	91480136	91474024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_91476819_91477940_91478192_91478360_91478423_91479495
92772	chr2	-	8308	48	FSM	ENSMUSG00000014355.11	ENSMUST00000014499.10	8942	48	6	628	6	-628	multi-exon	FALSE	canonical	3	297	junction_42	39.2671319365267	297	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCATAATAAATTTAGTAA	NA	False	NA	NA	False	NA	NA	NA	128529305	128452651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_128454984_128457289_128457425_128459473_128459673_128461173_128461270_128461813_128461901_128464292_128464432_128465415_128465484_128465797_128465876_128466777_128466896_128469040_128469128_128470416_128470611_128471436_128471491_128471599_128471691_128472147_128472225_128474517_128474593_128475256_128475336_128476352_128476436_128476557_128476693_128479027_128479120_128483261_128483497_128484365_128484638_128487053_128487173_128490224_128490440_128492115_128492295_128494615_128494687_128494771_128494809_128495086_128495166_128499045_128499195_128500167_128500260_128501656_128501926_128502724_128502800_128505794_128505983_128507367_128507429_128508484_128508626_128510844_128510980_128511569_128511636_128511742_128511834_128513981_128514078_128516470_128516681_128517590_128517812_128518021_128518168_128520130_128520205_128521439_128521523_128522028_128522130_128522313_128522366_128526421_128526584_128527743_128527981_128529072
92773	chr17	-	684	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	42	8	-13	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	84	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	NA	False	NA	NA	NA	74623416	74606476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
92775	chrX	-	5212	23	Antisense	novelGene_ENSMUSG00000001173.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	11.8730370278401	316	28	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGATTTCGCCCCCTGCGG	NA	False	NA	NA	False	NA	NA	NA	47054745	47001279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_47001569_47001845_47001926_47005351_47005430_47009035_47009077_47019247_47019357_47019772_47019857_47020447_47020574_47020660_47020821_47022248_47022352_47023720_47023837_47024966_47025082_47025175_47025366_47027175_47027286_47029983_47030094_47032380_47032518_47035878_47035991_47036584_47036750_47037001_47037237_47049328_47049445_47050251_47050339_47050956_47051083_47052015_47052129_47052335
92776	chr4	+	3512	2	Intergenic	novelGene_1878	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820662	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66820930_66822590
92777	chr3	-	4919	16	Fusion	ENSMUSG00000098912.8_ENSMUSG00000068923.15	novel	5020	5	NA	NA	6389	10859	multi-exon	TRUE	non_canonical	0	0	junction_1	0	201	14	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCTCAGCTTTGATCG	NA	False	NA	NA	False	NA	NA	NA	88733286	88669161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_88669407_88684288_88684820_88691612_88691806_88695642_88695745_88696662_88696715_88706913_88707031_88715218_88715410_88715859_88715950_88717975_88718142_88719318_88719466_88720990_88721142_88722938_88723054_88723314_88725067_88726974_88727092_88727352_88728179_88733162
92778	chr17	-	6635	11	NNC	ENSMUSG00000096780.8	novel	1859	9	NA	NA	2780	8350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	400.275655017889	75	34	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGTCAGGCC	NA	False	NA	NA	False	NA	NA	NA	6713714	6697572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699319_6702404_6702530_6702867_6702945_6703293_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6713365
92779	chr4	-	823	8	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	12521	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	216.504324319353	2	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	7334	False	NA	NA	False	NA	NA	NA	129215916	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203519_129203834_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871
92780	chr2	+	3058	11	FSM	ENSMUSG00000027259.16	ENSMUST00000119031.8	2477	11	-201	-380	-131	378	multi-exon	FALSE	canonical	3	35	junction_1	26.5369553641709	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCCATACCCACCCCCC	NA	False	NA	NA	False	NA	NA	NA	120970777	120987539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
92781	chr4	+	2621	8	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-13	40414	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	151.186464138743	601	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCAAATGAGCCAATTGAG	NA	False	NA	NA	False	NA	NA	NA	146206928	146255418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158_146254266_146254433
92782	chr15	-	4024	13	NNC	ENSMUSG00000037458.16	novel	4217	13	NA	NA	0	55	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	204.370782321414	15	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTATATTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	38519507	38488426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_38490624_38491874_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
92783	chr11	-	1085	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	139	409	5	-185	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	1	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTTCACTTGCCAAGAAT	NA	False	NA	NA	False	NA	NA	NA	33113067	33102695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
92784	chrM	-	1010	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGGCTCTGCCACC	9986	False	NA	-1	True	NA	NA	NA	3710	2700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
92785	chr17	+	3266	10	NNC	ENSMUSG00000019432.16	novel	2848	10	NA	NA	458	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	752.122248403283	5	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAACCGTGTCTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	35462100	35472656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35468549_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
92786	chr7	+	2937	4	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	2	49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	195.192782198068	299	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCAAAAGTCCCACATACC	NA	False	NA	NA	False	NA	NA	NA	42827013	42841582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838947
92787	chr4	-	2468	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	42	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	462.91114403601	2	97	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGGCCAGAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	137523653	137469053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483059_137485882_137486044_137523552
92788	chr15	+	4388	13	NIC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	32	-4	intron_retention	FALSE	canonical	3	620	junction_1	93.0493820506079	17	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGGTTAATGTTGCAGT	NA	False	NA	-62	True	NA	NA	NA	101982330	102005604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102002149_102003106_102003213_102003411
92789	chr9	-	1035	4	NIC	ENSMUSG00000070283.5	novel	1487	5	NA	NA	55	-6	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	232.267566014332	2	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATATTTTTGTTGCTCAG	8198	False	NA	NA	False	NA	NA	NA	108444578	108443065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_108443275_108443357_108443459_108443754_108443951_108444049
92790	chr5	-	3759	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	9	55	intron_retention	FALSE	canonical	0	0	junction_1	16.3110265396406	75	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGCACGTGCACACACAT	NA	False	NA	NA	False	NA	NA	NA	121756917	121734782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752364_121756833
92791	chr2	+	1126	2	Genic_Genomic	ENSMUSG00000064193.9	novel	1302	1	NA	NA	-46	331	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTCTAAATTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	80667438	80669117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_80668086_80668638
92792	chr7	-	2859	5	NIC	ENSMUSG00000030744.14	novel	489	6	NA	NA	0	-3	intron_retention	FALSE	canonical	3	4974	junction_1	3929.44588968979	2	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAACAAAGACAAGGCCTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99128159_99128480_99130999_99131467_99131562_99131776_99131908_99132798
92793	chr11	-	879	6	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	63	-692	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	458.799040975458	1	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTCAGCAAAAGAAGCCCA	8256	False	NA	NA	False	NA	NA	NA	102907931	102885566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885693_102885800_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
92794	chr13	-	7365	5	NNC	ENSMUSG00000094499.4	novel	3029	10	NA	NA	-12	-17309	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	9.52299847737046	50	76	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGAAACCTGGAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	66549944	66516521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66517022_66518268_66518952_66519399_66519543_66523104_66529024_66549824
92795	chr4	-	4111	9	ISM	ENSMUSG00000028693.16	ENSMUST00000081182.5	1461	13	18649	0	-2581	0	3prime_fragment	FALSE	canonical	3	1005	junction_7	144.696881445317	14	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116466026	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880
92796	chr2	+	2347	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11374	216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	601	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11413660	11426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11413668_11413730_11414822_11424998
92797	chr5	+	1941	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	100	4	30	-4	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCTGTGTGGCATTCTT	NA	False	NA	NA	False	NA	NA	NA	108048467	108056867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
92798	chr4	-	5167	1	Intergenic	novelGene_1881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	274	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCGAGTAGCTGGGTAA	NA	False	NA	NA	False	NA	NA	NA	66825835	66820668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_66820700_66825800
92799	chr4	+	2768	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	13	0	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3199076928666	711	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216507	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578926_147637751_147637884_147639766_147639779_147665698_147665826_147667290_147667431_147667838
92800	chr8	+	1713	5	FSM	ENSMUSG00000034656.19	ENSMUST00000141981.8	1153	5	-91	-469	-78	469	multi-exon	FALSE	canonical	3	25	junction_4	8.95474734428616	99	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCACATGATGAGAAGCCA	NA	False	NA	NA	False	NA	NA	NA	85327981	85340140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_85328135_85328384_85328451_85328552_85328669_85338226_85338378_85338913
92801	chr2	-	1435	4	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-56	17012	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	23.6971634495683	10	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACCCAATAAAAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	177016156	176989300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176990532_177007618_177007703_177008856_177008918_177016097
92802	chr1	-	5565	9	ISM	ENSMUSG00000048402.15	ENSMUST00000062483.15	6637	14	198067	7	127036	-7	3prime_fragment	FALSE	canonical	3	103	junction_8	7.74596669241483	281	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATAATTTATCTTGTTGA	NA	False	NA	NA	False	NA	NA	NA	118783282	118761868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165
92803	chrX	+	2061	9	Antisense	novelGene_ENSMUSG00000080995.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGCAGCCGCCTGACAT	NA	False	NA	NA	False	NA	NA	NA	92985756	93256263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_92986126_93095125_93095613_93246019_93246555_93247547_93247718_93248657_93248747_93252930_93253057_93253141_93253266_93255320_93255388_93256169
92804	chr7	-	724	6	NNC	ENSMUSG00000030744.14	novel	489	6	NA	NA	942	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6492.39907584246	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGCCTGACTGGATTGT	9381	False	NA	NA	False	NA	NA	NA	99131899	99128092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128670_99129078_99129191_99130858_99130999_99131467_99131562_99131776
92805	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
92806	chr1	+	4101	16	Antisense	novelGene_ENSMUSG00000040225.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	75	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTGCCACGACCCCCAT	NA	False	NA	NA	False	NA	NA	NA	162505754	162533064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162505793_162507063_162507171_162507388_162507622_162508319_162508466_162508789_162508902_162509886_162510093_162511625_162511826_162515684_162515785_162518707_162518805_162519943_162520196_162520305_162520493_162523845_162523924_162524988_162525841_162526445_162526601_162529748_162529959_162531936
92807	chr5	+	1137	9	NNC	ENSMUSG00000025538.16	novel	2264	9	NA	NA	-3	-898	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_8	158.290427300579	17	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACAGCTTCAGTGTACT	NA	False	NA	NA	False	NA	NA	NA	129875857	129890741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129890425
92808	chr8	+	4453	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	-23	0	-23	0	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	1472	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5026	False	NA	NA	False	NA	NA	NA	107329959	107396878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
92809	chr16	+	3402	6	NNC	ENSMUSG00000080717.11	novel	669	6	NA	NA	0	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	59.0199966113181	10	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCAATTAAATGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	97798514	97817930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97812743_97812913_97814119_97817467
92810	chr14	-	5581	16	NIC	ENSMUSG00000022185.20	novel	4735	19	NA	NA	-10	-228	intron_retention	FALSE	canonical	3	11	junction_7	154.843060333143	136	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCCTTTGTGCTGACTAT	2620	False	NA	NA	False	NA	NA	NA	54924398	54881939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54886988_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
92811	chr1	+	2941	9	ISM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	31069	5569	31069	-5569	3prime_fragment	FALSE	canonical	3	1477	junction_1	233.132339026571	21	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAGAAAAGTACCTCCA	NA	False	NA	-6	True	NA	NA	NA	118586744	118607329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
92812	chr6	-	6658	17	ISM	ENSMUSG00000045962.17	ENSMUST00000088644.13	11330	28	85752	-2	-905	0	3prime_fragment	FALSE	canonical	2	7	junction_13	4.00731752547761	24	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGGTTGTTCTTTCTGA	3834	False	NA	NA	False	NA	NA	NA	119929864	119900929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119921661_119921746_119923197_119923282_119924935_119926381_119926968_119927092_119927203_119927262_119927459_119927634_119927975_119928093_119928595_119928759_119928858_119928957_119929645
92813	chr16	-	5300	3	Intergenic	novelGene_3626	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACCAGGTTAATTTCAAAT	851	False	NA	NA	False	NA	NA	NA	26691874	26627204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_26627749_26628417_26630666_26689366
92814	chr11	-	1371	7	FSM	ENSMUSG00000020743.16	ENSMUST00000146244.8	869	7	-3	-499	2	0	multi-exon	FALSE	canonical	1	4	junction_4	162.572035315631	185	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	NA	False	NA	NA	NA	115503728	115498743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115501242_115501309_115502728_115502861_115503610
92815	chr1	+	2351	11	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-32	-246	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	206.480604416008	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177772	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189397_167189461_167192076_167192219_167193343_167193457_167194973
92816	chr17	+	3402	11	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1732	865	1706	-865	internal_fragment	FALSE	canonical	3	15	junction_6	15.5244967712322	12	83	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGGGAGGGAGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	57184208	57195039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440
92818	chr15	+	6572	5	Antisense	novelGene_ENSMUSG00000041852.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	223	79	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAGGAAGCAGAAGACTG	NA	False	NA	NA	False	NA	NA	NA	82692679	82740688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_82693987_82695159_82695304_82699809_82699862_82709431_82709526_82735713
92819	chrM	+	1145	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-3	True	NA	86	True	NA	NA	NA	14143	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
92820	chr16	+	4197	7	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	1	-5	intron_retention	FALSE	canonical	3	1545	junction_3	248.439798207399	5	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6055	False	NA	NA	False	NA	NA	NA	22926509	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22929474_22929875_22930014_22930252_22930343_22930566
92821	chr5	-	1528	4	ISM	ENSMUSG00000029524.17	ENSMUST00000112067.8	1645	5	1038	13	-403	-10	3prime_fragment	FALSE	canonical	3	34	junction_3	4.54606056566195	64	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAATAGCATAACAAATGT	NA	False	NA	NA	False	NA	NA	NA	115621318	115616081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682
92822	chr17	-	2314	18	NNC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	111.428565724932	15	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGTGGTTGTGGAGACAG	NA	False	NA	NA	False	NA	NA	NA	24746835	24727830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24738154_24738221_24746739
92823	chr17	+	2493	6	Antisense	novelGene_ENSMUSG00000024165.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTTTCACAGCCGCCGCG	1450	False	NA	NA	False	NA	NA	NA	25161126	25179600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_25162954_25163386_25163655_25164555_25164602_25167610_25167754_25174990_25175139_25179539
92824	chr13	-	2320	5	NNC	ENSMUSG00000074865.12	novel	677	5	NA	NA	7	-2	intron_retention	FALSE	canonical	1	1	junction_4	29.9207286007544	455	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGTGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	62706436	62664612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62670268_62670333_62706300
92825	chr6	-	4267	12	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	2	629	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	71.3596408840981	2	69	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTTTTTTTGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	112673629	112602746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112605486_112621548_112621712_112626534_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
92826	chr10	-	849	2	Genic_Genomic	ENSMUSG00000071303.5	novel	624	1	NA	NA	-24	130900	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4282	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56231194	56099646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_56099806_56230504
92827	chr4	+	5487	11	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-247638	8693	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	38.0111825651347	89	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGCCTGGATACTTACA	NA	False	NA	NA	False	NA	NA	NA	147390095	147678348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390104_147533656_147533956_147536170_147536264_147639766_147639860_147641568_147641685_147643308_147643422_147661465_147661587_147665698_147665826_147667290_147667445_147667687_147672013_147678310
92828	chr7	+	1983	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	1	8	1	-8	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	2220	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCTTCTAGAGGACTGAGT	NA	False	NA	NA	False	NA	NA	NA	63835129	63861167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
92829	chr17	+	4720	5	Antisense	novelGene_ENSMUSG00000024097.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	73	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGAGGCCGGAGTCGC	NA	False	NA	NA	False	NA	NA	NA	80507505	80514734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_80511660_80511739_80511815_80512688_80512868_80513276_80513460_80514605
92831	chr3	-	5125	16	FSM	ENSMUSG00000054942.14	ENSMUST00000073089.13	4965	16	52	-212	18	212	multi-exon	TRUE	canonical	3	131	junction_7	24.7194030852059	200	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGACTAGTGACGTGCTGG	NA	False	NA	NA	False	NA	NA	NA	152045992	151979273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_151982491_151984529_151984647_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
92833	chr8	+	1536	3	NIC	ENSMUSG00000005142.11	novel	3822	24	NA	NA	11	179	intron_retention	FALSE	canonical	3	220	junction_2	6	14	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTTTTTTTTTACAAAAA	NA	False	NA	NA	False	NA	NA	NA	85809909	85812897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_85810118_85811029_85811444_85811983
92834	chr2	-	989	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	171	0	4	0	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2384	False	NA	NA	False	NA	NA	NA	38533928	38478047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
92835	chr5	+	3312	18	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCCCAGGGCAACATAGC	NA	False	NA	NA	False	NA	NA	NA	31314261	31331777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317208_31317298_31317436_31323228_31323358_31323702_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327259_31327525_31327619_31330125_31330408_31331111_31331436_31331577
92836	chrM	+	1147	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	465	-67	465	67	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGATATTAGTAAAATCA	15	True	NA	-94	True	NA	NA	NA	5792	6939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
92837	chr10	-	1623	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-16	-48	combination_of_known_splicesites	FALSE	canonical	3	38	junction_1	186.499329757509	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAGCAGTATGGAATTG	NA	False	NA	NA	False	NA	NA	NA	88520893	88510681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_88511933_88514385_88514499_88515720_88515818_88516340_88516437_88520827
92838	chr11	-	3441	13	FSM	ENSMUSG00000032633.13	ENSMUST00000102697.10	3437	13	-7	3	-7	-3	multi-exon	FALSE	canonical	3	222	junction_12	22.951034835057	167	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAAACAGAGGTTGGTAC	NA	False	NA	NA	False	NA	NA	NA	59700849	59682236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
92839	chrX	-	1341	5	NNC	ENSMUSG00000025264.13	novel	3796	5	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	144.948266633306	4	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	NA	False	NA	NA	NA	149879510	149872476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_149873411_149873600_149873739_149874671_149874764_149879160_149879252_149879424
92840	chr11	-	3965	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-267	-508	combination_of_known_junctions	FALSE	canonical	3	37	junction_18	97.6774106086452	138	37	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTTTTGTTTATCTGG	1557	False	NA	NA	False	NA	NA	NA	60113674	60090422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60113348
92841	chr17	+	1565	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	274	10	274	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGATCATTAACGGGAGACT	NA	False	NA	42	True	NA	NA	NA	40157517	40159082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157500_40159100
92842	chr17	-	7390	21	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-9772	8346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	363.832433958272	13	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCGCAGGCGCGGTCA	2696	False	NA	NA	False	NA	NA	NA	6744193	6697576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699322_6702404_6702530_6702867_6702945_6703293_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744128
92843	chr3	+	2933	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	1	-12	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_13	330.912972782204	1	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTTTAAATTATGGTAAG	4850	False	NA	NA	False	NA	NA	NA	34074247	34124459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116054_34116181_34118267_34118469_34123065
92844	chr15	-	3003	5	FSM	ENSMUSG00000033228.9	ENSMUST00000228072.2	4519	5	-1086	2602	-1086	271	multi-exon	FALSE	canonical	0	0	junction_2	104.145331148352	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTGTGAAGCACACATC	NA	False	NA	NA	False	NA	NA	NA	96317659	96312181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952
92846	chr2	+	3646	25	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	181.183301904146	4	52	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGTGGTTTTTATTGTT	NA	False	NA	NA	False	NA	NA	NA	166747959	166788306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783402_166783934_166784017_166784979_166785127_166786296_166786529_166787623
92847	chr14	-	2561	15	FSM	ENSMUSG00000040472.16	ENSMUST00000228899.2	2153	15	20	-428	15	0	multi-exon	FALSE	canonical	3	103	junction_14	124.625418346175	51602	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959618	55953333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
92848	chr10	+	3346	12	NIC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	intron_retention	FALSE	canonical	3	5618	junction_8	762.826735307025	32545	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
92849	chr6	+	1564	9	NNC	ENSMUSG00000036371.7	novel	15474	8	NA	NA	-20	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2344.74811746912	4	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATATAGGTGTGAACAGT	5824	False	NA	NA	False	NA	NA	NA	67243946	67261263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244192_67244305_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
92850	chr14	+	7190	18	NNC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	61.4170608489351	5	117	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATTTCTAGCCTCTCGT	NA	False	NA	NA	False	NA	NA	NA	21531501	21722190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21531622_21566693_21567567_21608616_21608897_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
92851	chr17	+	1867	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-7	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1081.39077580678	1	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135318	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13140881_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
92852	chrX	+	4035	16	NIC	ENSMUSG00000000838.18	novel	4058	17	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	204	junction_13	199.338461472497	350	101	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	NA	False	NA	NA	NA	67722382	67761569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755911_67756020_67756846_67756930_67759170
92853	chr19	-	1729	8	Fusion	ENSMUSG00000024955.16_ENSMUSG00000024953.18	novel	1262	6	NA	NA	-922	19	intron_retention	TRUE	non_canonical	0	0	junction_4	254.127639470517	382	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACAGTTTAATTTGTGT	NA	False	NA	-52	True	NA	NA	NA	6888396	6884098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6886826_6887625_6887724_6887833_6887949_6888040_6888117
92854	chr5	+	1207	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-20	-185	-20	185	mono-exon	FALSE	NA	NA	NA	NA	NA	99	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	96009552	96010759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009600_96010800
92855	chr11	+	4340	26	NNC	ENSMUSG00000020290.15	novel	5145	26	NA	NA	-93	-585	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	589.82734558513	46	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTCCCTTCACTGACTTA	NA	False	NA	NA	False	NA	NA	NA	23205947	23247012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206643_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239879_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
92856	chr3	+	3083	13	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	29	-11	intron_retention	FALSE	canonical	0	0	junction_2	509.797890235816	3	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTAAAATAACCAGTACAA	NA	False	NA	NA	False	NA	NA	NA	90383492	90395675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90383553_90384311_90384365_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390089_90390150_90391760_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
92857	chr9	-	621	1	Antisense	novelGene_ENSMUSG00000074516.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCGCAGCGCCGGAGACC	NA	False	NA	NA	False	NA	NA	NA	7752326	7751705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_7751700_7752300
92858	chr17	-	1731	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	724	1730	mono-exon	FALSE	NA	NA	NA	NA	NA	11	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGCAGGATCAACCAGGTA	NA	False	NA	NA	False	NA	NA	NA	40158994	40157263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157300_40159000
92859	chr1	+	6913	2	Intergenic	novelGene_362	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	132	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACGGTTTCCATACAAGA	NA	False	NA	NA	False	NA	NA	NA	45596606	45603612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_45597671_45597763
92860	chr17	+	3907	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	113	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	768.219210613452	1	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1619	False	NA	NA	False	NA	NA	NA	56611519	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620256_56622203_56622316_56622394_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
92861	chr4	+	5829	6	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-46	2816	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.793035873962	1868	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGACCACTGGATATGTC	NA	False	NA	NA	False	NA	NA	NA	147390084	147421007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147398491_147398579_147400358_147400439_147409230_147409335_147413438_147413566_147415724
92862	chrM	+	2359	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	580	multi-exon	FALSE	canonical	0	0	junction_1	0	3	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	-4	True	NA	4	True	NA	NA	NA	11741	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_11810_11854
92864	chr11	+	4630	29	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	13	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	51.0935516519273	110	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771148	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
92865	chr9	+	3427	7	Intergenic	novelGene_1065	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGGAAGTGAGACAGGGC	NA	False	NA	NA	False	NA	NA	NA	58125363	58157063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129152_58136640_58136691_58137110_58137369_58137772_58137914_58140437_58140530_58156820
92866	chr19	+	1874	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	3	-2	combination_of_known_junctions	FALSE	canonical	3	79	junction_8	134.380796050282	10	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTAGCTTCTCTGTGCCT	4132	False	NA	NA	False	NA	NA	NA	41921921	41932541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
92867	chr19	+	2373	7	NIC	ENSMUSG00000034445.9	novel	2634	9	NA	NA	-10	165	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	29.2845237853262	30	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGTCCATACTTTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	10554844	10567358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10554928_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
92868	chr16	+	3057	9	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-5	intron_retention	FALSE	canonical	3	675	junction_8	449.860377645109	5	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6053	False	NA	NA	False	NA	NA	NA	22926507	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
92869	chr6	+	5561	32	NIC	ENSMUSG00000063870.13	novel	6697	39	NA	NA	5391	1	intron_retention	FALSE	canonical	3	138	junction_2	99.1429139057932	3	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAGTGATCTGGTTCTGT	7587	False	NA	NA	False	NA	NA	NA	125078922	125107549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125078973_125079125_125079262_125079394_125079574_125079755_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105951_125106782
92870	chr16	-	2855	8	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-464	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	541.676196671791	1	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCTTGGCCAAATCAGTT	8675	False	NA	NA	False	NA	NA	NA	33787373	33775627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782466_33782515_33782611_33784141_33784190_33784257_33784296_33787195
92871	chr7	+	1502	7	NNC	ENSMUSG00000063229.16	novel	1277	7	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3649.62814315833	20	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTTGAACAGTGATGG	NA	False	NA	NA	False	NA	NA	NA	46495266	46505034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500480_46501300_46501454_46504373
92872	chr4	+	2584	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-40250	-2061	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	313.418550025361	68	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATATTTAATTCAAATGAG	NA	False	NA	NA	False	NA	NA	NA	146493229	146552688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146493332_146533486_146533533_146547961_146548020_146548860_146548988_146550437
92873	chr4	+	2083	11	FSM	ENSMUSG00000028318.15	ENSMUST00000054723.9	1235	11	-602	-246	-29	-2	multi-exon	FALSE	canonical	3	141	junction_3	16.4754362612952	52	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCATCTCCCTCCTTTC	-15	True	NA	NA	False	NA	NA	NA	45018632	45032358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
92874	chr7	-	7503	6	ISM	ENSMUSG00000058230.13	ENSMUST00000075845.11	9147	7	50022	764	49966	-764	3prime_fragment	TRUE	canonical	3	90	junction_2	8	212	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGCCTGAGAGAAATGAAG	NA	False	NA	NA	False	NA	NA	NA	16298896	16228407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_16231936_16232508_16232615_16245117_16245250_16246332_16246411_16282987_16283133_16295382
92875	chr1	-	1663	12	ISM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	-277	4245	0	3172	5prime_fragment	FALSE	canonical	3	98	junction_1	11.5551140694077	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAATGTGAGTTGTTAA	NA	False	NA	NA	False	NA	NA	NA	183078813	183062160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
92876	chr17	-	3142	2	Antisense	novelGene_ENSMUSG00000039218.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTAGCACTCTTGGCT	NA	False	NA	NA	False	NA	NA	NA	24041640	24037776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_24040663_24041384
92877	chrM	+	844	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	111	0	111	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTGTAGCTTAATATTA	6	False	NA	2	True	NA	NA	NA	180	1024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_200_1000
92878	chr7	-	2220	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	23	16	9	-11	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTGTGAAACACAAACTGA	NA	False	NA	NA	False	NA	NA	NA	143102820	143067335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
92879	chr5	+	4041	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-1	intron_retention	FALSE	canonical	0	0	junction_3	680.408158550603	15	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTAATGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
92880	chr2	-	2674	17	NNC	ENSMUSG00000027620.17	novel	2711	17	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	715.718299049109	15	48	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACAAGAAAATTTTCGTTT	NA	False	NA	NA	False	NA	NA	NA	156022084	155989169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009479_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
92881	chr13	+	3477	23	NNC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-12	-2141	intron_retention	FALSE	non_canonical	0	0	junction_3	107.508562026896	2	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCACTGACCTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	55782827	55826928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55783009_55785838_55786028_55787603_55787748_55793253_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
92884	chr2	-	1224	4	FSM	ENSMUSG00000018770.10	ENSMUST00000142768.8	862	4	-79	-283	-35	-1	multi-exon	FALSE	canonical	3	2058	junction_3	1115.93219626762	2436	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGCTGTGATTTGTAC	NA	False	NA	NA	False	NA	NA	NA	73741705	73738791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73739722_73740207_73740286_73741298_73741405_73741595
92885	chr10	-	3565	10	ISM	ENSMUSG00000047146.18	ENSMUST00000174189.2	14369	13	60683	6650	-23894	1395	3prime_fragment	FALSE	canonical	3	87	junction_3	16.6866546810451	1	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCCTAGAACCAAGC	NA	False	NA	NA	False	NA	NA	NA	62674214	62647005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954
92886	chr5	-	9995	31	NIC	ENSMUSG00000038095.16	novel	10071	32	NA	NA	7	-1	combination_of_known_junctions	TRUE	canonical	3	24	junction_30	107.715283141355	348	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGAGTTGTGGTGTTGT	NA	False	NA	NA	False	NA	NA	NA	124564013	124506771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563909
92887	chr5	-	649	1	Antisense	novelGene_ENSMUSG00000096617.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTGTGGTCATGAGCC	NA	False	NA	NA	False	NA	NA	NA	96010752	96010103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96010100_96010800
92888	chrX	+	2112	6	Genic_Genomic	ENSMUSG00000004221.17	novel	622	4	NA	NA	-27546	-5087	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9770	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTTTAGCACCTGTGA	NA	False	NA	NA	False	NA	NA	NA	73409349	73471387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_73410420_73410489_73411192_73411305_73411516_73411758_73411863_73412019_73412029_73471370
92889	chr8	+	4373	16	NNC	ENSMUSG00000000303.13	novel	789	4	NA	NA	-215	-7	intron_retention	FALSE	canonical	0	0	junction_1	262.220483986706	2	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTTGTGAGGCTCACT	5626	False	NA	NA	False	NA	NA	NA	107330559	107396871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330702_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
92890	chr4	-	528	1	FSM	ENSMUSG00000079942.6	ENSMUST00000116058.3	393	1	-57	-78	-57	78	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTGCCTCTGCCTCCC	NA	False	NA	NA	False	NA	NA	NA	125964109	125963581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_125963600_125964100
92892	chr7	+	2858	24	ISM	ENSMUSG00000056394.21	ENSMUST00000177588.10	3174	28	-80	3629	-80	1785	5prime_fragment	FALSE	canonical	3	470	junction_1	187.354076802502	2	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTTACCCATGTGATCT	1027	False	NA	NA	False	NA	NA	NA	13011158	13041721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443
92893	chr12	-	773	1	FSM	ENSMUSG00000043483.5	ENSMUST00000052882.5	636	1	11	-148	11	148	mono-exon	FALSE	NA	NA	NA	NA	NA	403	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAATAAAGATGTGGTT	NA	False	NA	NA	False	NA	NA	NA	96889821	96889048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_96889000_96889800
92894	chr15	-	6588	21	NNC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	23	1	intron_retention	FALSE	canonical	0	0	junction_16	54.1566939537487	14	114	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTCAGCTCTCTGCGA	NA	False	NA	NA	False	NA	NA	NA	76524106	76510436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76520506_76520761_76520888_76521140_76521294_76521375_76522167_76522241_76523224_76523647_76523791_76523877_76523974_76524053
92895	chr11	-	9257	47	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	-881	-304	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	115.743123767388	179	51	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCATTTGTGACGTAAAGA	NA	False	NA	NA	False	NA	NA	NA	62350248	62207819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263908_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62349280
92897	chr5	+	2368	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	-25	2	16	2	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	21	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	302	False	NA	NA	False	NA	NA	NA	77099169	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
92898	chr19	+	1133	3	Intergenic	novelGene_1218	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1714	72	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCGGACTCTGCTCTGCG	1175	False	NA	NA	False	NA	NA	NA	22699833	22703225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763_22700850_22702894
92899	chr2	+	1163	2	Antisense	novelGene_ENSMUSG00000083773.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACAAGAAGATGCGGCTG	NA	False	NA	NA	False	NA	NA	NA	28823428	28824646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_28824339_28824393
92900	chr6	-	4712	4	Antisense	novelGene_ENSMUSG00000030031.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	173	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTGCTAAGCGTTGCCT	NA	False	NA	NA	False	NA	NA	NA	95106763	95094869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_95094954_95095501_95095713_95098717_95099828_95103456
92901	chr6	-	3130	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	-4	25	-4	-25	multi-exon	TRUE	canonical	3	94	junction_8	16.939542404853	240	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTTGATGAATTTTCT	-4	True	NA	NA	False	NA	NA	NA	25809229	25743760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
92902	chr17	+	2835	10	NNC	ENSMUSG00000001228.15	novel	949	4	NA	NA	-7974	379	intron_retention	TRUE	non_canonical	0	0	junction_1	731.921688450815	3	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAAAAAAATGTTTTTGT	4578	False	NA	NA	False	NA	NA	NA	56602346	56629718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56602407_56621123_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
92904	chr2	+	3500	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	15	126	15	-126	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	1	89	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGTCTTCAGGACAGG	NA	False	NA	NA	False	NA	NA	NA	166747993	166788183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
92905	chr6	+	9457	27	Antisense	novelGene_ENSMUSG00000076217.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	603	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGATGCGACCCAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	119900929	120014977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_119903648_119904006_119904195_119911215_119911414_119913331_119913533_119914317_119914978_119916596_119916663_119920765_119920828_119921661_119921746_119923197_119923280_119924933_119926381_119926968_119927090_119927201_119927262_119927459_119927632_119927973_119928091_119928593_119928759_119928858_119928959_119929647_119929933_119933033_119933160_119937606_119937685_119945435_119945625_119946197_119946530_119947816_119948039_119949728_119949817_119967051_119967207_119969296_119969518_119979149_119979326_120013833
92906	chr9	+	6034	14	FSM	ENSMUSG00000032097.11	ENSMUST00000217034.2	6029	14	-5	0	-1	0	multi-exon	FALSE	canonical	3	13	junction_1	7.66070431047592	394	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGTATGTATGTTC	NA	False	NA	NA	False	NA	NA	NA	44516187	44552028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44516250_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
92907	chr10	+	3655	25	Antisense	novelGene_ENSMUSG00000112806.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	134	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCACCGCCTCCCGGTTC	NA	False	NA	NA	False	NA	NA	NA	62580403	62628088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62580606_62581042_62581233_62582721_62582867_62583126_62583242_62586325_62586471_62586712_62586799_62587523_62587636_62588954_62589191_62592259_62592453_62595871_62596055_62599214_62599301_62600099_62600310_62601039_62601213_62601720_62601833_62602333_62602539_62606626_62606783_62607709_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626820_62627981
92908	chr5	-	2120	4	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	22	0	intron_retention	FALSE	canonical	0	0	junction_2	5376.40216336373	2	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548307	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65545785_65545904_65547016_65547121_65547827_65548081
92909	chr2	-	4906	27	NNC	ENSMUSG00000074899.7	novel	11654	66	NA	NA	42667	13984	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	69	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGCGGGACAAGAACCCGC	4962	False	NA	NA	False	NA	NA	NA	119873492	119857989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119858056_119860621_119860687_119860763_119861022_119861294_119861352_119861785_119861884_119862053_119862142_119862325_119862479_119862592_119862942_119865048_119865148_119865394_119865536_119865674_119865801_119866060_119866105_119866282_119866331_119866577_119866632_119866869_119866999_119867225_119867308_119867534_119867578_119868220_119868357_119868978_119869111_119869341_119869565_119869695_119869816_119870107_119870246_119870336_119870443_119870622_119870802_119870956_119871123_119871598_119871786_119871873
92910	chr9	+	1626	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	-39	12	3	-12	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	48	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTAAAAGCTGTCTTATGG	NA	False	NA	NA	False	NA	NA	NA	119956870	119960613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
92911	chr3	-	4640	22	FSM	ENSMUSG00000015697.15	ENSMUST00000015841.12	4658	22	18	0	18	0	multi-exon	FALSE	canonical	3	19	junction_21	51.1160255943511	379	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1662	False	NA	NA	False	NA	NA	NA	95264493	95230835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264337
92912	chr7	-	2882	2	FSM	ENSMUSG00000040435.13	ENSMUST00000167273.2	2809	2	-78	5	44	-5	multi-exon	FALSE	canonical	3	424	junction_1	0	7	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGATAAACTCTTACGTG	3905	False	NA	NA	False	NA	NA	NA	45175648	45172350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45172747_45173162
92913	chr1	-	2801	22	NIC	ENSMUSG00000026516.9	novel	9392	23	NA	NA	44	-176	combination_of_known_splicesites	FALSE	canonical	2	24	junction_10	146.974105729894	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAGACTTGTAACAGATA	NA	False	NA	NA	False	NA	NA	NA	180971725	180920999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
92914	chr15	+	2130	9	ISM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	10105	290	10076	-290	3prime_fragment	FALSE	canonical	1	2	junction_8	12.598983093885	66	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACATATAACTTCCACAG	NA	False	NA	NA	False	NA	NA	NA	94451628	94465897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94460898_94460962_94464619_94464779_94464894
92915	chr11	+	1119	1	Antisense	novelGene_ENSMUSG00000078965.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACTGCAAATGGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	20284822	20285941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20284800_20285900
92916	chr4	+	5388	11	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	-186	1659	multi-exon	TRUE	non_canonical	0	0	junction_5	66.6925033268358	37	125	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTTCCAGGTTCCAGGT	NA	False	NA	NA	False	NA	NA	NA	147216308	147419850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147219028_147219122_147224494_147224577_147228053_147228142_147249797_147249849_147260303_147260362_147261203_147261331_147262781_147264173_147416362_147417258_147417427_147418681_147418838
92917	chr16	+	1106	5	NIC	ENSMUSG00000098274.8	novel	677	6	NA	NA	31	-5	intron_retention	FALSE	canonical	3	9815	junction_1	1605.94940767136	39	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAGGTGGTGCTGATTGA	NA	False	NA	NA	False	NA	NA	NA	55786668	55791793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790539_55791673
92918	chr5	-	387	1	Intergenic	novelGene_933	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1248	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTCATTTAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	146198175	146197788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_146197800_146198200
92919	chr5	+	8136	28	Fusion	ENSMUSG00000042719.18_ENSMUSG00000029452.19	novel	5447	24	NA	NA	0	8096	multi-exon	FALSE	non_canonical	0	0	junction_1	155.74962321083	4333	55	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGCCGCCTCCGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	121536057	121590537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_121536126_121537094_121537124_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890_121581171_121582037_121583638_121585205_121585341_121590251
92920	chr12	-	9536	27	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	-5656	22518	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.630751459139	1188	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACAGGTAGAGGAAGACG	NA	False	NA	NA	False	NA	NA	NA	4289950	4223485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4223601_4244312_4244445_4244862_4244978_4245131_4245264_4246767_4246922_4248293_4248468_4249302_4249432_4250899_4251045_4251181_4251341_4253508_4253601_4254720_4254838_4256363_4256624_4256910_4256976_4258576_4258662_4259304_4259462_4260191_4260339_4260766_4260890_4261479_4261603_4262073_4262202_4262602_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751_4284277_4286360
92921	chr12	-	1865	4	NNC	ENSMUSG00000079036.11	novel	1042	5	NA	NA	742	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_3	112.570965271789	57	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	87484587	87474846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87476041_87478169_87478364_87480888_87480980_87484201
92922	chr4	+	5557	9	FSM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	56	29	21	-29	multi-exon	FALSE	canonical	3	420	junction_8	37.0776212829248	410	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATAAAGTCTTTGTAGTC	NA	False	NA	NA	False	NA	NA	NA	132857871	132927038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027
92924	chr14	-	791	8	NNC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	-2	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1501.33195285155	6	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAGTCATAATTCCAACA	NA	False	NA	NA	False	NA	NA	NA	31923828	31902143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31902269_31902598_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
92925	chr11	-	4707	22	NNC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	13	4920	intron_retention	TRUE	non_canonical	0	0	junction_1	426.2365657441	29	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTCCGGGGCGGCGCGTCC	NA	False	NA	NA	False	NA	NA	NA	120687190	120675106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120675162_120675942_120676715_120677132_120677519_120677600_120677674_120677832_120677890_120678199_120678615_120678698_120678806_120678885_120679421_120679490_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685805_120686302_120686550_120687044
92926	chrX	+	2612	5	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-27	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	70.7120039314401	10	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAAAAAAGCACTGTCT	NA	False	NA	NA	False	NA	NA	NA	133618684	133622655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_133618800_133619115_133619568_133619668_133619742_133620375_133620475_133620782
92927	chr1	+	4296	14	ISM	ENSMUSG00000042207.18	ENSMUST00000047714.14	8714	27	48723	2400	-12986	1363	3prime_fragment	FALSE	canonical	3	725	junction_3	84.5990193964459	7	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGGTCTGCAGTGTCCTG	2643	False	NA	NA	False	NA	NA	NA	134536631	134560623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_134536798_134540925_134541108_134541624_134541750_134543655_134543807_134543926_134544042_134545429_134545786_134547297_134547437_134548580_134548761_134549672_134549832_134552448_134552935_134555002_134555115_134556335_134556491_134558170_134558492_134558974
92928	chr15	-	4150	14	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGACCCGGATGAGGCAG	3532	False	NA	NA	False	NA	NA	NA	102005601	101982362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982394_101990405_101990548_101992594_101992805_101993113_101993229_101994435_101994491_101994937_101995075_101997050_101997187_101997289_101997469_101998303_101998528_101999829_101999928_102001418_102002147_102003104_102003211_102003409_102003483_102003685
92929	chr11	+	6490	12	NIC	ENSMUSG00000037331.16	novel	6617	19	NA	NA	1134	0	intron_retention	FALSE	canonical	3	480	junction_11	86.5052427589992	7	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGTCTCCCATCT	NA	False	NA	NA	False	NA	NA	NA	57933572	57952860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_57934877_57938520_57938696_57938802_57938973_57940522_57940916_57941608_57941733_57941827_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57947990_57948086_57948215_57949384
92930	chr4	+	5026	8	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	12	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	169.704785688896	155	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACTCAGTCACCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	132857862	132927055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917546_132922082_132922219_132923027
92931	chr7	-	4651	13	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	-3	-10	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	43.3970685133864	94	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGATACATTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	121732145	121706499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121706952_121709904_121710994_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
92932	chr2	-	5868	17	Antisense	novelGene_ENSMUSG00000033943.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACGTCACTGCGCACG	9990	False	NA	NA	False	NA	NA	NA	119777528	119727709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119727803_119733085_119734213_119746909_119747853_119750104_119750184_119750290_119750387_119751844_119751978_119752217_119752328_119753911_119754563_119756854_119757203_119762191_119762422_119762988_119763166_119763551_119763622_119765627_119766146_119769117_119769262_119771691_119772323_119776648_119776940_119777301
92933	chr15	+	5138	6	FSM	ENSMUSG00000022412.15	ENSMUST00000023048.12	5148	6	6	4	6	-4	multi-exon	FALSE	canonical	3	146	junction_1	35.3361005205724	30	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCTGACGTGTCTATG	2759	False	NA	NA	False	NA	NA	NA	80118224	80137568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
92934	chr11	-	1897	3	NIC	ENSMUSG00000058546.9	novel	560	5	NA	NA	28	0	intron_retention	FALSE	canonical	3	11765	junction_2	3544	106	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5991	False	NA	NA	False	NA	NA	NA	78074382	78071760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_78072050_78072242_78073813_78074344
92935	chr2	+	1613	1	Genic_Genomic	ENSMUSG00000026969.4	novel	NA	NA	NA	NA	181	871	mono-exon	FALSE	NA	NA	NA	NA	NA	37	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATGATTCTGTCTGGGTA	NA	False	NA	NA	False	NA	NA	NA	25111550	25113163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_25111600_25113200
92936	chr15	-	1748	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	12	-85	at_least_one_novel_splicesite	FALSE	canonical	2	336	junction_1	1722.22229691756	22	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGCGTCTGCAGTTAC	NA	False	NA	NA	False	NA	NA	NA	31601938	31591030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591194_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
92937	chr12	+	5922	4	NNC	ENSMUSG00000099851.2	novel	704	3	NA	NA	-1784	6809	intron_retention	FALSE	non_canonical	0	0	junction_1	0	9	65	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAAGACCACCCAAGGAT	NA	False	NA	NA	False	NA	NA	NA	31535172	31544697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_31538314_31540466_31540543_31541511_31541603_31542083
92938	chr1	-	3461	22	NNC	ENSMUSG00000026516.9	novel	9392	23	NA	NA	13	305	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_19	181.998691779704	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTTGCTTCTCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	180971756	180920518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966818_180966867_180969890_180969965_180971615
92939	chr2	+	3817	1	NIC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	1223	1106	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	9	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAACCATATGTCTTCA	NA	False	NA	NA	False	NA	NA	NA	51964306	51968123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_51964300_51968100
92940	chr19	+	2641	10	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-20	-3	combination_of_known_junctions	FALSE	canonical	3	35	junction_2	120.180419924933	82	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTACTGTGTCTAGTATG	NA	False	NA	NA	False	NA	NA	NA	38043516	38062866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38043766_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
92941	chr2	+	3468	20	NIC	ENSMUSG00000027624.21	novel	6249	22	NA	NA	8	850	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	36.4964233818547	1	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTCCAAGTTATAATTAC	7792	False	NA	NA	False	NA	NA	NA	156262979	156382756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_156263220_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
92942	chr2	+	2095	5	Antisense	novelGene_ENSMUSG00000082196.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	33	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATTCCTAAGGTGGGTGG	NA	False	NA	NA	False	NA	NA	NA	156631638	156681807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_156632366_156643024_156644098_156679742_156679832_156680335_156680454_156681719
92944	chr4	+	2880	7	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-10	-284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	196.482399551037	43	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTTGGCATTTTGTATA	884	False	NA	NA	False	NA	NA	NA	145237318	145265474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237410_145239538_145239640_145245028_145245121_145245504_145245556_145257381_145257486_145261385_145261513_145263160
92945	chr13	+	6387	43	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	4	68210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	470.754775819551	217	22	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGGCCCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	6598198	6698761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6623164_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685_6630159_6630209_6631628_6632437_6632544_6634638_6634739_6636517_6636628_6637086_6637150_6638524_6638690_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653500_6654991_6655117_6655670_6655765_6664739_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675249_6685959_6686037_6698608
92946	chr7	+	1153	7	NNC	ENSMUSG00000110379.2	novel	989	6	NA	NA	-100883	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1.34370962471642	4	11	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAATCTTCTTGCTTGAG	NA	False	NA	NA	False	NA	NA	NA	10815443	10922724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_10815579_10915721_10915896_10916326_10916361_10916575_10916768_10919553_10919704_10922042_10922218_10922431
92947	chrX	-	2814	17	NNC	ENSMUSG00000031333.8	novel	5667	16	NA	NA	12	-2986	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	100.43024631554	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCTTAAAATTAAACAGG	9873	False	NA	NA	False	NA	NA	NA	103457440	103327248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103440147_103440293_103457262
92948	chr13	+	6969	47	NNC	ENSMUSG00000021193.11	novel	3318	26	NA	NA	-8	68210	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_25	470.035817422178	250	23	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGGCCCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	6598176	6698761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685_6630159_6630209_6631628_6632437_6632544_6634638_6634739_6636517_6636628_6637086_6637150_6638524_6638690_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653500_6654991_6655117_6655670_6655765_6664739_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675249_6685959_6686037_6698608
92949	chr17	+	1094	6	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	19	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2028.26777324889	5	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3055	False	NA	NA	False	NA	NA	NA	35816933	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817362_35820015_35820121_35820304_35820436_35820877_35821037_35821184_35821245_35821456
92952	chr10	-	8091	12	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-82	1382	intron_retention	FALSE	non_canonical	0	0	junction_3	74.1936265111501	5	165	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATTTCCCCAAACAAAAAAG	2909	False	NA	NA	False	NA	NA	NA	62723185	62647018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62649604_62650214_62650353_62652162_62652253_62654719_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62722788
92953	chr3	+	1241	7	NNC	ENSMUSG00000008958.15	novel	1456	6	NA	NA	9	-124	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	422.969660062437	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCCTTTTTGTCTGATGT	2589	False	NA	NA	False	NA	NA	NA	95018361	95030238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689_95029839_95029900
92954	chrM	-	2356	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	33	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTTTGGTTTCGGGGTTT	1	True	NA	7	True	NA	NA	NA	3702	1346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1300_3700
92955	chr4	-	2617	20	NNC	ENSMUSG00000019055.16	novel	3243	19	NA	NA	0	-307	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.77920030991	13	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGAGAGATGCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	148021182	147994516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147994827_147995103_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
92956	chr17	-	1895	9	Fusion	ENSMUSG00000036775.14_ENSMUSG00000024177.10	novel	2224	9	NA	NA	457	-31	multi-exon	FALSE	canonical	2	3	junction_8	58.8382316185658	10	61	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATAAAAACGTTTCTAGA	NA	False	NA	NA	False	NA	NA	NA	26312685	26300234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26312590
92957	chr3	-	6107	12	FSM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	154	0	-13	0	multi-exon	FALSE	canonical	3	75	junction_1	37.6139590757922	71	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTTTCCTAGACTA	NA	False	NA	NA	False	NA	NA	NA	94489869	94404850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_94409373_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
92958	chr11	-	1271	6	FSM	ENSMUSG00000020743.16	ENSMUST00000106506.8	993	6	-47	-231	2	0	multi-exon	FALSE	canonical	2	5	junction_2	146.078608974757	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	NA	False	NA	NA	NA	115503751	115498743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115499440_115499886_115499923_115500105_115500262_115500364_115500475_115502728_115502861_115503610
92959	chr7	+	1974	10	Antisense	novelGene_ENSMUSG00000065118.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	23	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCGCACACCTCACCTGG	591	False	NA	NA	False	NA	NA	NA	143067325	143089711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_143068410_143074109_143074180_143077872_143078021_143078433_143078454_143080902_143081047_143083152_143083295_143086045_143086117_143088021_143088154_143089386_143089473_143089634
92960	chrM	-	887	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAGCAGTGGAATAGAAC	-61	True	NA	NA	False	NA	NA	NA	11539	10652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10700_11500
92961	chr13	-	2903	4	NNC	ENSMUSG00000094942.8	novel	2310	4	NA	NA	-21	614	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	29.044027881056	155	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGCTGATATGCATCCT	NA	False	NA	NA	False	NA	NA	NA	62531012	62515527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62518166_62519376_62519438_62519623_62519709_62530893
92962	chr2	+	6218	37	NNC	ENSMUSG00000001855.16	novel	6605	36	NA	NA	15	1	intron_retention	TRUE	non_canonical	0	0	junction_11	36.5886691460149	47	34	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACATCTGGGTATTTAT	NA	False	NA	NA	False	NA	NA	NA	31864512	31942378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881440_31884534_31884989_31886387_31886564_31887964_31888063_31892603_31892691_31892892_31893043_31894324_31894484_31896700_31896805_31900194_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718_31920810_31921261_31921321_31923214_31924049_31924370_31924982_31928113_31928185_31929331_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
92963	chr4	+	4226	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43237	3330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	127.559554718571	52	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTGTGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	147533636	147601273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597042_147597711
92964	chr11	+	1576	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	-410	-172	410	multi-exon	FALSE	canonical	3	35417	junction_1	0	43	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCTGTCATTGGAAGGT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
92965	chr2	-	555	5	NNC	ENSMUSG00000046229.11	novel	803	2	NA	NA	-15625	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	166.276877526612	101	7	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATGTCTGCTGTGTCTTG	9944	False	NA	NA	False	NA	NA	NA	156170292	156153769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_156153870_156154274_156154323_156154421_156154715_156161924_156161982_156170235
92966	chr2	+	5239	37	NNC	ENSMUSG00000051329.14	novel	5684	37	NA	NA	2170	7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	144.099599043316	4	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAAGATTTATCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	90509728	90566679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90509853_90510115_90510228_90511695_90511871_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
92967	chr2	+	1800	3	NIC	ENSMUSG00000038900.18	novel	600	4	NA	NA	-6	-9	intron_retention	FALSE	canonical	3	5241	junction_1	641	7	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCAGTGAATGGGCTTGG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32851852_32852060_32852685_32852996
92968	chr6	+	5154	15	NNC	ENSMUSG00000030096.9	novel	738	6	NA	NA	4	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	128.264713521272	6	136	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAAGAACGTCTGGTGTGT	NA	False	NA	NA	False	NA	NA	NA	91678641	91736039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91678807_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894_91733212_91734100
92969	chr5	-	5571	14	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	-6215	-166	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_13	82.9598177489967	193	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATTTCTCCCTGGCAT	NA	False	NA	NA	False	NA	NA	NA	114111032	114077991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114110788
92970	chr16	+	7724	28	NNC	ENSMUSG00000022801.14	novel	2794	22	NA	NA	-1	27798	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	30.3521625636594	220	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCACAGGATGTGCCTG	NA	False	NA	NA	False	NA	NA	NA	32734495	32863815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32734774_32770661_32770807_32772426_32772554_32775669_32775776_32779764_32779902_32782004_32782115_32794249_32794344_32796098_32796220_32799765_32799915_32802197_32802275_32806345_32806398_32807108_32807259_32808800_32808852_32810634_32810689_32814131_32814204_32815317_32815367_32816175_32816284_32817751_32817859_32818873_32819012_32826033_32826112_32832710_32837434_32839810_32839913_32840883_32841016_32849384_32849462_32851146_32851307_32855910_32855992_32861132_32861262_32863698
92971	chr15	+	1476	12	Antisense	novelGene_ENSMUSG00000022336.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTACTCCGCCATCTTG	NA	False	NA	NA	False	NA	NA	NA	43113450	43146072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_43113633_43114874_43115010_43115599_43115704_43124455_43124564_43125992_43126096_43126603_43126729_43128893_43129022_43129529_43129654_43134272_43134371_43138569_43138750_43141703_43141819_43145998
92972	chr5	-	3747	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-4	-4	intron_retention	FALSE	canonical	0	0	junction_1	13.7846483061999	79	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTTGCTTCTTGATCA	NA	False	NA	NA	False	NA	NA	NA	121757005	121734841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
92973	chr3	+	1463	10	NNC	ENSMUSG00000036632.10	novel	1471	10	NA	NA	-964	-4	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_5	206.282677920073	50	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCAAGGTGTCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	54641995	54657212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54642139_54646202_54646375_54646682_54646730_54648799_54648869_54649567_54649625_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
92974	chr8	-	1666	5	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	-13251	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3341.33329488395	8	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGTTGACTGAGTTTGG	NA	False	NA	NA	False	NA	NA	NA	46677572	46659840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848_46664048_46677550
92975	chr13	+	4727	4	FSM	ENSMUSG00000113836.2	ENSMUST00000220871.2	2707	4	344	-2364	-35	2364	multi-exon	FALSE	canonical	3	77	junction_1	103.747556865478	730	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTTAATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	62163762	62201164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729
92976	chr13	-	2944	7	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	25	-346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.3364778474973	89	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAACCTTGACTTAGCT	7306	False	NA	NA	False	NA	NA	NA	65496386	65484381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65486229_65486397_65486755_65486838_65487225_65488362_65488424_65488791_65488919_65491576_65491654_65496297
92977	chr15	-	2059	18	ISM	ENSMUSG00000022350.8	ENSMUST00000022976.6	4033	29	12997	7012	-8641	-7012	internal_fragment	FALSE	canonical	3	371	junction_14	36.20606154684	4	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTCGCTTCCTTACCCC	NA	False	NA	NA	False	NA	NA	NA	59233019	59210857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971
92978	chr18	-	2439	15	NNC	ENSMUSG00000024587.11	novel	2745	15	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1358.68782173786	6	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649626	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633019_64633303_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644949_64645054_64645121_64648396_64648480_64649486
92979	chr2	+	3558	25	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	13	-7	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_11	180.808350808867	85	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAATGGTGGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	166747991	166788302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771767_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
92980	chrM	+	967	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	177	0	177	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	25	False	NA	54	True	NA	NA	NA	14321	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14300_15300
92982	chr7	+	4362	11	Genic_Genomic	ENSMUSG00000098066.3	novel	633	4	NA	NA	3974	13432	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTTGAGCCTTGCCTTAAT	NA	False	NA	NA	False	NA	NA	NA	92292920	92310082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_92293986_92295197_92295234_92295637_92295731_92296135_92296291_92297148_92297332_92298134_92298240_92298663_92298783_92302356_92302433_92306510_92308073_92309003_92309097_92309207
92984	chr1	-	4929	12	Antisense	novelGene_ENSMUSG00000051223.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGCGAGCAGGAGGGGAGG	NA	False	NA	NA	False	NA	NA	NA	58446510	58432294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_58432375_58433359_58433433_58436832_58437011_58438161_58438256_58439235_58439302_58439863_58440000_58440270_58440382_58440498_58442190_58442770_58442911_58443388_58443513_58444192_58444892_58444973
92985	chr13	+	3576	21	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	-3	33	intron_retention	FALSE	canonical	3	36	junction_8	174.428631537371	395	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGCTGCCC	1306	False	NA	NA	False	NA	NA	NA	59733204	59782599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
92986	chr16	-	5147	5	Antisense	novelGene_ENSMUSG00000057880.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	107	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGCTTCCAACACATAACT	NA	False	NA	NA	False	NA	NA	NA	8380798	8372594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_8376283_8377309_8377969_8378301_8378658_8379100_8379482_8380735
92987	chr4	+	6709	3	NIC	ENSMUSG00000038729.25	novel	7231	5	NA	NA	15451	-19	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	7	156	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTCAACGTGTATAGTGT	NA	False	NA	NA	False	NA	NA	NA	57757545	57896963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_57757684_57854561_57857038_57892868
92988	chrM	+	666	1	FSM	ENSMUSG00000064353.1	ENSMUST00000082404.1	70	1	-664	68	-664	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	66	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	34	False	NA	-35	True	NA	NA	NA	6277	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6300_6900
92989	chrX	-	5715	15	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	-7	-810	intron_retention	FALSE	canonical	3	69	junction_14	52.7158826703517	50	74	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTACCTATGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	104972916	104891152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104891330_104894642_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
92990	chr1	+	2862	8	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	-51	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	69.1764971294589	12	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATCAGTGTGTTGCTCG	NA	False	NA	NA	False	NA	NA	NA	82294311	82423082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583_82422145_82422774
92991	chr13	-	11716	5	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	128	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACAGCTCGAGCGGCCTT	NA	False	NA	NA	False	NA	NA	NA	23514186	23354394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23354902_23354972_23361359_23508976_23510673_23510750_23513672_23513980
92992	chr15	-	5184	16	NIC	ENSMUSG00000036698.12	novel	13800	19	NA	NA	-23975	2909	intron_retention	FALSE	canonical	3	74	junction_15	8.3575647702479	3	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAAATGTCCCTAATTGA	NA	False	NA	NA	False	NA	NA	NA	73009878	72976272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_72978866_72979013_72979214_72980220_72980323_72983535_72983671_72985556_72985752_72988151_72988243_72991185_72991346_72992912_72993098_72995171_72995306_72995725_72995849_72995978_72996099_72997012_72997161_72998295_72998938_73000172_73000310_73002709_73002892_73009841
92993	chr13	-	2727	6	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	77	-345	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	44.6363080910597	7	10	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAACCTTGACTTAGCTC	7358	False	NA	NA	False	NA	NA	NA	65496334	65484380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65486229_65486397_65486756_65486838_65487135_65488362_65488424_65488791_65488919_65496297
92994	chrX	-	2621	7	NNC	ENSMUSG00000031200.17	novel	980	6	NA	NA	32	5586	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	21.3443981721981	6	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACATTAAATTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	74460117	74448463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_74448825_74453151_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620_74459820_74460017
92995	chr11	+	4122	11	NIC	ENSMUSG00000010554.15	novel	2054	12	NA	NA	-2	2101	combination_of_known_junctions	FALSE	canonical	3	58	junction_5	139.204202522769	613	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAGGTTAGCAGATGTT	8492	False	NA	NA	False	NA	NA	NA	74661653	74710821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686577_74686644_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
92996	chr7	-	4947	4	NIC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	0	5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	275.587050171488	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTTTGAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	118454907	118441439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_118445318_118449843_118449913_118451625_118452564_118454845
92997	chr17	+	1630	10	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	22	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1139.82075697221	6	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTCTCACATTAAAGTAC	NA	False	NA	NA	False	NA	NA	NA	13135290	13143414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139286_13141387_13141620_13142104_13142298_13142416_13142581_13143146
92998	chr9	-	1933	8	ISM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	14919	0	500	0	3prime_fragment	FALSE	canonical	3	1026	junction_1	129.74417528509	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	107497647	107491323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618
93001	chr11	+	4086	24	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-4	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	557.677363345422	5	91	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCGGAAGGAAGAGGAGGC	NA	False	NA	NA	False	NA	NA	NA	72332176	72342576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72341493_72341601_72341702
93002	chrM	+	2074	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-250	0	250	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGATCCCCAAGTCTCTG	-4	True	NA	4	True	NA	NA	NA	11741	13815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13800
93003	chr15	+	2798	9	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	61	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	271.023407660667	44	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGGTTAATGTTGCAGT	NA	False	NA	-33	True	NA	NA	NA	101982359	102005604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997166_102003411_102003485_102003687
93004	chrX	-	7456	17	NNC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	7	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	84.53769037388	368	39	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACCAAAATGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	104972902	104841231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864407_104918386_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972608
93005	chr7	+	6360	8	ISM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	50339	7	50284	-7	3prime_fragment	FALSE	canonical	3	33	junction_2	7.01892485516471	8	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAAAATGCTTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	78973285	79015249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_78973393_78975181_78975350_78998007_78998192_79000498_79000592_79003737_79003849_79005549_79005620_79007812_79007898_79009707
93006	chr17	+	1457	9	NNC	ENSMUSG00000068039.14	novel	3419	10	NA	NA	-10	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1183.18827089141	14	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACCACCTGGGTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	13135315	13143440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137040_13139644_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
93007	chr15	+	1132	2	Genic_Genomic	ENSMUSG00000078300.4	novel	1002	1	NA	NA	-74	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGACCATAG	88	False	NA	NA	False	NA	NA	NA	12574900	12576167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_12575440_12575574
93008	chr11	+	5595	20	FSM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	13	6	-5	-6	multi-exon	TRUE	canonical	3	50	junction_5	6.60059596066985	196	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTAACCGTTGGTTTCTGG	4030	False	NA	NA	False	NA	NA	NA	83644534	83674574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
93009	chr1	+	3571	13	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	18	-5	intron_retention	FALSE	canonical	3	277	junction_4	35.4050961491892	84	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATTAAACCACAAGTATA	NA	False	NA	NA	False	NA	NA	NA	132405122	132433388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
93010	chr17	-	2563	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	-42	-1	-42	1	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	68757	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884239	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
93011	chr2	-	2269	11	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	-11	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	5115.12942260506	41	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTATAACTGCGTGAATAAA	3725	False	NA	NA	False	NA	NA	NA	154734762	154713380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730114_154730173_154730281_154734609
93012	chrX	+	3507	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	-1	-2156	-1	2156	mono-exon	FALSE	NA	NA	NA	NA	NA	2730	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32943122	32946629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_32943100_32946600
93013	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
93014	chr2	+	5684	25	ISM	ENSMUSG00000027111.17	ENSMUST00000112101.8	4156	26	185	-1638	-14	-7	3prime_fragment	FALSE	canonical	3	444	junction_20	38.1094686032516	336	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGTTTGTAATTTTATT	NA	False	NA	NA	False	NA	NA	NA	71617468	71688753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
93015	chr2	+	5700	7	Intergenic	novelGene_2731	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	143	52	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGCTGGTTACTGTTAG	NA	False	NA	NA	False	NA	NA	NA	150952644	151183125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_150952930_151021580_151021658_151021759_151022648_151051250_151053883_151176154_151176557_151181579_151182858_151182987
93016	chr4	-	2462	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	49	11	49	-11	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	308	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137523646	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
93017	chr2	-	3214	7	NNC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	62	-28	intron_retention	FALSE	canonical	0	0	junction_6	13.2748718344933	94	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAATGTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166349929	166341988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349381_166349493_166349807
93018	chr17	-	1635	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	559	1469	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACCCCCGGCCGGAGCCG	NA	False	NA	NA	False	NA	NA	NA	40159159	40157524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157500_40159200
93019	chr4	+	1673	11	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	5383.18773218992	5	58	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAAAAATAAAAGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	150321696	150333303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332416_150332935
93020	chr1	-	3886	16	FSM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	130	693	-39	-693	multi-exon	FALSE	canonical	3	483	junction_14	55.1621448297854	343	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTCCCCATGCGTCTTG	NA	False	NA	NA	False	NA	NA	NA	80318067	80243332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099_80259271_80260339_80260517_80261392_80261539_80264615_80264845_80266460_80266576_80267798_80267960_80281796_80281911_80300575_80300774_80317962
93021	chr11	+	5669	14	Antisense	novelGene_ENSMUSG00000004393.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1520	19	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTGTCAGTGCGCACGCG	NA	False	NA	NA	False	NA	NA	NA	6205166	6217730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_6209259_6209546_6209621_6211615_6211722_6212456_6212549_6212663_6212737_6213938_6214040_6214130_6214237_6214674_6214793_6215506_6215755_6216313_6216410_6216514_6216683_6216810_6216974_6217418_6217579_6217658
93022	chr1	-	3268	17	NIC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-8	-3	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	139.040222934768	1	6	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTTTTGTAGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	58544122	58501932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58540481_58540586_58541000_58541050_58543930
93023	chr1	-	3265	12	NNC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_9	209.343681202715	237	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAGTAAATATAGCCG	NA	False	NA	NA	False	NA	NA	NA	36749002	36737194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745625_36745730_36745950_36746027_36747271_36747337_36748886
93024	chr3	+	5078	4	Intergenic	novelGene_3060	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	88	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAATTTGTCTTAGCT	NA	False	NA	NA	False	NA	NA	NA	3391886	3496662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_3395189_3395266_3395563_3495118_3496396_3496459
93025	chr2	+	1737	11	FSM	ENSMUSG00000026926.15	ENSMUST00000114093.2	1638	11	-2	-97	-2	97	multi-exon	FALSE	canonical	3	1351	junction_8	100.774054200474	67	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTTCAGCATAGTGCAA	651	False	NA	NA	False	NA	NA	NA	26279357	26284050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529
93026	chr3	+	2457	12	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	73	0	intron_retention	FALSE	canonical	0	0	junction_4	397.535008074293	4	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	90383536	90395686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388272_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393580_90394157_90394405_90394533_90394625_90394765
93027	chr5	-	5584	31	NIC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	0	1370	combination_of_known_junctions	FALSE	canonical	3	243	junction_29	68.980423954111	252	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGTGGACTCTTGTTTAG	NA	False	NA	NA	False	NA	NA	NA	124563655	124511224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
93028	chr1	-	6636	43	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-69	-46	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	342.432193662097	1	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAATTCTGGGCTGTGTG	7818	False	NA	NA	False	NA	NA	NA	84817101	84702030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721539_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738859_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84773410_84773537_84792543_84792691_84816949
93029	chr14	-	5682	31	FSM	ENSMUSG00000032849.15	ENSMUST00000036554.14	5715	31	34	-1	34	1	multi-exon	TRUE	canonical	3	201	junction_24	29.291276668812	195	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACAGATCTGTTTGTTCG	NA	False	NA	NA	False	NA	NA	NA	118943583	118720102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_118721853_118727910_118728046_118737377_118737484_118738119_118738293_118745004_118745095_118753844_118754001_118763623_118763816_118765362_118765464_118766378_118766490_118767269_118767390_118771403_118771555_118790695_118790776_118832173_118832321_118834091_118834187_118834550_118834589_118834905_118835047_118836725_118836936_118841568_118841666_118848848_118848936_118849129_118849225_118852542_118852735_118853777_118853868_118856300_118856403_118864863_118865114_118867029_118867156_118868390_118868555_118869509_118869600_118891561_118891787_118905758_118905880_118906408_118906520_118943447
93030	chr17	-	1916	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	559	1750	mono-exon	FALSE	NA	NA	NA	NA	NA	218	41	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAGCGCGAGCGAAGCCG	NA	False	NA	NA	False	NA	NA	NA	40159159	40157243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157200_40159200
93031	chr17	+	8001	20	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	70	9120	intron_retention	FALSE	non_canonical	0	0	junction_14	323.86083328365	1	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCGCAGGCGCGGCCA	NA	False	NA	NA	False	NA	NA	NA	6320814	6367709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6361221_6361568_6361646_6361983_6362110_6365190_6365232_6367643
93032	chrM	-	2086	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTAGGCCTACAATGGT	1	True	NA	7	True	NA	NA	NA	3702	1616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1600_3700
93034	chr8	-	2664	9	NNC	ENSMUSG00000031586.18	novel	2547	9	NA	NA	15072	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_8	592.177641738524	358	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGATTTGTCTGACAACT	NA	False	NA	NA	False	NA	NA	NA	34404232	34272671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34403749
93035	chr5	+	5653	44	NIC	ENSMUSG00000037426.19	novel	7929	43	NA	NA	-9	8	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	36.4349068030642	265	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTCCCTCCCTCTCTCC	2043	False	NA	NA	False	NA	NA	NA	33021094	33149013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33021166_33021353_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
93036	chr3	+	2972	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	18	859	5	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	34	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTTGCAGCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	102927940	102964448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
93037	chr9	-	1724	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5026.41413952738	26	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGAAATCTGTGTTGGT	7153	False	NA	NA	False	NA	NA	NA	78388953	78385743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386809_78386901_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
93038	chr10	+	7128	13	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	79	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCCGCCCGCGCTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	62647570	62723333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658541_62668665_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62713928_62715911_62723189
93039	chr15	+	773	3	NIC	ENSMUSG00000003970.10	novel	1020	5	NA	NA	263	-8	intron_retention	FALSE	canonical	3	10962	junction_1	267.5	1	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788765	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76789237_76790055_76790172_76790320
93040	chr10	-	1893	11	NNC	ENSMUSG00000061032.10	novel	1984	13	NA	NA	-14	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	380.33727137897	11	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGCTTCTCCCATTT	NA	False	NA	NA	False	NA	NA	NA	78248840	78236219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_78236819_78237683_78237803_78238421_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241526_78244959_78245054_78246799_78246858_78247237_78247321_78248653
93041	chr1	-	7514	41	FSM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	15	1504	15	-1504	multi-exon	FALSE	canonical	3	131	junction_21	76.4630261956719	270	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAGCAGTAGAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	36283371	36180611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36215856_36215881_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
93042	chr10	+	1234	8	NNC	ENSMUSG00000061315.15	novel	885	8	NA	NA	49	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5230.03670725012	42	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTCTTGTTGGATGGA	5021	False	NA	NA	False	NA	NA	NA	127871552	127884482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127872130_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883639_127883931_127883997_127884113_127884237_127884361
93043	chr17	-	10356	19	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10046	8350	intron_retention	FALSE	non_canonical	0	0	junction_1	352.350489263107	6	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGTCAGGCC	2422	False	NA	NA	False	NA	NA	NA	6744467	6697572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699319_6702404_6702530_6702867_6702945_6703293_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
93044	chr18	-	1511	10	FSM	ENSMUSG00000024539.18	ENSMUST00000120934.8	1497	10	-15	1	0	0	multi-exon	FALSE	canonical	0	0	junction_7	167.715440958197	1	61	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	67857658	67798581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_67798945_67805736_67805839_67808789_67808900_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
93045	chr5	+	6590	1	Intergenic	novelGene_847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	159	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACGCAGACAAAGGGGCCCA	NA	False	NA	NA	False	NA	NA	NA	121026785	121033375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_121026800_121033400
93046	chr12	-	4058	8	FSM	ENSMUSG00000079036.11	ENSMUST00000161712.8	2154	8	-3	-1901	0	-10	multi-exon	FALSE	canonical	3	77	junction_6	99.4164606745846	414	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCATGTGTGTGGGTGTT	NA	False	NA	NA	False	NA	NA	NA	87490609	87472948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
93047	chr5	+	2766	8	Antisense	novelGene_ENSMUSG00000025747.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	472	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGCGCTCTTTTCCTC	738	False	NA	NA	False	NA	NA	NA	30264281	30278591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30266132_30266965_30267038_30268233_30268410_30269082_30269187_30273465_30273639_30276226_30276307_30276630_30276705_30278354
93048	chr18	+	3653	16	NNC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	0	3684	intron_retention	FALSE	canonical	3	6	junction_7	491.737662670746	1	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTGAAGTGAATACCAATAAA	NA	False	NA	NA	False	NA	NA	NA	35686462	35724445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35710610_35711511_35711957_35712071_35712318_35712434_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
93049	chr1	-	1616	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-841	8	-841	-8	mono-exon	FALSE	NA	NA	NA	NA	NA	1451	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGATCTTACTCCCTTAGT	NA	False	NA	NA	False	NA	NA	NA	24653893	24652277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
93050	chrX	+	3390	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	-173	-5	-173	0	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	2	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	163202609	163216912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
93051	chr5	+	4228	5	NNC	ENSMUSG00000007812.17	novel	4157	5	NA	NA	36	1	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	195.054319357455	454	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGACTCTTTGTTTTGAGC	1369	False	NA	NA	False	NA	NA	NA	145168602	145184113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145168642_145170250_145170413_145173859_145174053_145179729_145179835_145180384
93052	chr1	+	3854	14	FSM	ENSMUSG00000026439.15	ENSMUST00000190997.7	2856	14	-228	-770	-226	0	multi-exon	FALSE	canonical	3	60	junction_13	83.2346081867393	188	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	NA	False	NA	NA	NA	132404876	132433397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
93053	chr17	+	2030	17	Antisense	novelGene_ENSMUSG00000096780.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCCAGCTCCCGGCACCG	NA	False	NA	NA	False	NA	NA	NA	6708467	6757836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_6708880_6709603_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6757654
93054	chr6	-	2180	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	4.24264068711928	8	96	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGCCAACGGCTCAAGGC	7473	False	NA	NA	False	NA	NA	NA	122691591	122684552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688494_122688753_122689580_122689666_122690091
93055	chr18	+	3027	1	ISM	ENSMUSG00000005871.16	ENSMUST00000115781.10	12346	16	95859	2320	15582	-2320	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTATAGTAAGGCAGATT	NA	False	NA	NA	False	NA	NA	NA	34449895	34452922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_34449900_34452900
93056	chr8	+	493	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	27	18	27	-18	mono-exon	FALSE	NA	NA	NA	NA	NA	26	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAGTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87774343	87774836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_87774300_87774800
93057	chr2	-	4400	6	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3611	2392	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	59.0342273600663	200	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTAGTGATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	175895229	175880991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175884942_175886096_175886158_175886363_175886491_175890210_175890313_175891615_175891671_175895124
93058	chr8	+	4881	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	42	-244	multi-exon	FALSE	non_canonical	0	0	junction_3	574.837716229546	218	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAATTTGCTGGGATTC	NA	False	NA	NA	False	NA	NA	NA	19834803	20045644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20037903_20038097_20039783_20039904_20041811
93059	chr11	+	3772	20	NNC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	4343	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	213.494704664232	2	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	4586	False	NA	NA	False	NA	NA	NA	6246947	6306642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6247200_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297831_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
93060	chr16	+	5025	2	Intergenic	novelGene_3637	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	21	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTCAGATCTTTGTTCTC	NA	False	NA	NA	False	NA	NA	NA	31967116	32019161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_31971191_32018210
93061	chr3	+	4100	24	FSM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	21	-235	10	-44	multi-exon	FALSE	canonical	3	273	junction_13	62.1055263911158	217	37	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAACAGCTAACTATAA	NA	False	NA	NA	False	NA	NA	NA	152052135	152099205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
93062	chr1	-	4025	25	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-25	1507	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	285.474884573446	6	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGTGGTGCTGACAGAT	6907	False	NA	NA	False	NA	NA	NA	84818012	84700477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84700777_84726948_84727071_84728078_84728217_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792694_84817954
93063	chr16	+	2375	1	Antisense	novelGene_ENSMUSG00000116348.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	102	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCTTTTTCAGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	8922341	8924716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_8922300_8924700
93064	chr15	-	2624	6	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-83	intron_retention	FALSE	canonical	3	16287	junction_5	6032.48159218078	17	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGCATTGCCAAGGAGGAAG	3572	False	NA	NA	False	NA	NA	NA	79967553	79962078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962628_79962907_79963010_79963890_79964754_79965096_79965985_79966590_79966784_79967524
93065	chr5	-	1937	5	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	934	8	1	-8	3prime_fragment	FALSE	canonical	3	4052	junction_3	83.3351666465004	75	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	9823	False	NA	NA	False	NA	NA	NA	142891575	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
93066	chr17	-	1602	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	110	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149124	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145525_36146497_36146932_36147054_36147166_36147519_36147629_36148888
93067	chrM	+	930	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	20	7	20	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATAGAAATATGTCTGAT	18	False	NA	129	True	NA	NA	NA	2770	3700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
93068	chr2	+	3082	10	NNC	ENSMUSG00000027227.8	novel	2352	9	NA	NA	90	-93	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	54.8535648818462	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGACTCTG	NA	False	NA	NA	False	NA	NA	NA	122065319	122095728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_122065440_122076962_122076997_122079279_122079345_122081600_122082614_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
93069	chr17	+	3445	3	NIC	ENSMUSG00000096910.3	novel	5788	4	NA	NA	0	494	intron_retention	FALSE	canonical	3	48	junction_2	25	219	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAAATATAGTCGATCC	NA	False	NA	NA	False	NA	NA	NA	33508517	33523635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_33508644_33519554_33519977_33520738
93070	chr11	-	4924	20	NNC	ENSMUSG00000005198.16	novel	6740	29	NA	NA	-2160	0	intron_retention	TRUE	non_canonical	0	0	junction_1	89.9411318708858	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	NA	False	NA	NA	NA	69635557	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69625639_69625848_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422
93071	chr4	+	4816	6	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	4	-997	intron_retention	FALSE	canonical	3	216	junction_3	582.181071488931	741	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTGGAAACTAATCCC	4710	False	NA	NA	False	NA	NA	NA	135583446	135594696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833
93073	chr16	+	1206	7	NIC	ENSMUSG00000000884.18	novel	3549	8	NA	NA	2	2	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	102.907725657503	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCAAGGTGGGAACTTCC	NA	False	NA	NA	False	NA	NA	NA	18317629	18383294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18382784
93074	chr13	-	2672	22	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	10	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	288.908203610383	19	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTACTTGGTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	6698803	6631209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632504_6634655_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
93075	chr2	-	1425	6	NNC	ENSMUSG00000027551.16	novel	1352	2	NA	NA	36	632	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	231.573400890517	28	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGTTAGTGCACCTGGA	NA	False	NA	NA	False	NA	NA	NA	168797150	168776100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_168776703_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
93076	chr7	-	1645	2	FSM	ENSMUSG00000050708.17	ENSMUST00000211694.2	604	2	-1040	-1	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	0	66	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109263	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958
93077	chr1	-	6535	36	NIC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	875	1	intron_retention	FALSE	canonical	3	17	junction_4	486.881090960302	10	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGACGTCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71679572	71624680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450
93078	chr4	+	4157	28	Antisense	novelGene_ENSMUSG00000028465.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	18	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGCTCTGTTAAAGGGA	NA	False	NA	NA	False	NA	NA	NA	43531549	43543275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43532086_43532191_43532320_43532828_43533012_43533124_43533187_43533301_43533429_43533552_43533681_43533864_43533973_43534392_43534500_43534581_43534764_43535517_43535634_43535734_43535866_43535954_43536136_43536242_43536413_43536525_43536673_43537789_43537911_43537986_43538088_43538189_43538340_43538431_43538601_43538675_43538779_43539089_43539221_43539362_43539553_43539641_43539774_43539969_43540136_43540527_43540673_43542479_43542602_43542699_43542794_43542876_43542967_43543138
93079	chrUn_JH584304v1	-	3576	7	Intergenic	novelGene_4622	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	291.705140319619	393	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAGAGAATGGCCAACAATC	NA	False	NA	NA	False	NA	NA	NA	60858	52201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_52392_53535_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
93080	chr2	-	2557	11	Antisense	novelGene_ENSMUSG00000093242.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGGAAGAGGCGGGGCCA	NA	False	NA	NA	False	NA	NA	NA	75497251	75489615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_75489666_75491807_75491932_75492013_75492163_75492238_75492450_75492829_75492919_75493002_75493099_75493186_75493269_75493913_75493967_75495369_75495494_75495576_75495644_75495739
93082	chrX	-	1777	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	93	-11	17	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	101	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	NA	NA	NA	135642008	135633690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
93083	chr16	-	546	1	Intergenic	novelGene_3678	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212021	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
93084	chr11	+	2833	4	NNC	ENSMUSG00000057322.13	novel	457	4	NA	NA	168	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7946.19619692341	1	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	114559619	114563157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_114559641_114559731_114561357_114561562_114562683_114563090
93085	chr4	+	4895	19	NIC	ENSMUSG00000028580.16	novel	5058	20	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	162.727447660873	8	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390667	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_130390779_130396235_130396610_130428352_130428422_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
93086	chr1	+	4529	9	NNC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	1	3637	intron_retention	FALSE	non_canonical	0	0	junction_6	107.009856438554	55	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGAGATCTGCGGAGCTGC	NA	False	NA	NA	False	NA	NA	NA	75187524	75195887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189873_75190219_75190342_75190457_75193237_75193469_75193617_75193851_75194086_75195836
93087	chr19	+	2529	7	NNC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	3311	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	302.660242222566	3	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10164228	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10164248_10168803_10168865_10170275_10170353_10171064_10171183_10171637_10171762_10171852_10171979_10172234
93088	chr8	+	2708	11	NNC	ENSMUSG00000031756.6	novel	1768	12	NA	NA	-8	-135	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	95.4757037156574	25	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACCCAACCCCAAACTAG	NA	False	NA	NA	False	NA	NA	NA	117648460	117668044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117662260_117663446_117664014_117667182_117667310_117667573
93089	chr13	-	4059	14	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	5	1	intron_retention	FALSE	canonical	3	31	junction_3	2385.61118165957	71	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	5131	False	NA	NA	False	NA	NA	NA	58549950	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58547027_58547706_58547805_58548146_58548232_58549877
93090	chr6	+	2052	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	46	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTAGTGGTCTTATCTTTT	NA	False	NA	NA	False	NA	NA	NA	122684572	122691587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690596_122690703
93091	chr11	+	551	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	-25	0	-25	0	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	10	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	68792383	68795360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
93092	chr17	-	2758	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_17	98.1200667549712	926	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	24746918	24727823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735571_24737715_24737774_24738104_24738221_24746739
93093	chr15	+	2180	12	FSM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	33	618	4	-618	multi-exon	FALSE	canonical	1	2	junction_11	11.4357710498301	56	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAGACATGAGTGGAATC	NA	False	NA	NA	False	NA	NA	NA	94441556	94465569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94460898_94460962_94464619_94464779_94464894
93094	chr17	-	2808	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	0	317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.8895179622	2	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTGTGTGTATTTTG	4817	False	NA	NA	False	NA	NA	NA	25179619	25161126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25163092_25163228_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
93095	chr2	-	3978	7	NNC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-161224	197039	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	86.8862602614603	14	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAATAAAATTAATTTT	NA	False	NA	NA	False	NA	NA	NA	177251337	176881877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176882089_177076224_177079501_177079668_177079803_177080953_177081015_177081219_177081347_177086489_177086545_177251223
93096	chr8	+	2456	2	NNC	ENSMUSG00000110013.2	novel	763	4	NA	NA	-107	-42419	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	9	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCATAACAATAAAAACAATT	NA	False	NA	NA	False	NA	NA	NA	52809538	52813955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_52809842_52811802
93097	chr2	+	6963	20	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	-5386	-3	combination_of_known_junctions	FALSE	canonical	3	283	junction_19	67.9382969198202	273	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTGTGTCGGTTTTCT	5511	False	NA	NA	False	NA	NA	NA	32091008	32124546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32091031_32094020_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32120622
93098	chrX	+	2557	3	Intergenic	novelGene_3904	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.5	73	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACGGTTTCCGTGTCGTT	NA	False	NA	NA	False	NA	NA	NA	33286768	33293778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_33287076_33291466_33292192_33292253
93099	chrM	+	737	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	866	-58	866	58	mono-exon	FALSE	NA	NA	NA	NA	NA	91	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTCTCAATAAGATATTA	5	True	NA	55	True	NA	NA	NA	6193	6930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6200_6900
93100	chrM	+	1616	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-3	-68	-3	68	mono-exon	FALSE	NA	NA	NA	NA	NA	11	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	-2	True	NA	NA	False	NA	NA	NA	5324	6940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
93101	chr7	+	2660	2	FSM	ENSMUSG00000006333.15	ENSMUST00000146303.2	1185	2	-10	-1465	0	0	multi-exon	FALSE	canonical	3	14286	junction_1	0	54	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTATTGGTGTGCCTCT	1309	False	NA	NA	False	NA	NA	NA	3707036	3709893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707448_3707644
93102	chr13	-	2291	5	NNC	ENSMUSG00000074865.12	novel	2439	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	6	junction_4	29.4904645605999	484	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706426	62664608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62699112_62699154_62706300
93103	chr2	-	1112	3	Genic_Genomic	ENSMUSG00000081484.2_ENSMUSG00000087701.5	novel	493	1	NA	NA	-46	71	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAATGAAAACCCAAACC	NA	False	NA	NA	False	NA	NA	NA	51761676	51707845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_51708097_51708445_51708544_51760913
93104	chr17	-	3098	10	Fusion	ENSMUSG00000023905.16_ENSMUSG00000041319.15	novel	1673	11	NA	NA	1037	1	intron_retention	FALSE	non_canonical	0	0	junction_7	233.924858675116	89	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGCATTTTATTCCCC	NA	False	NA	-73	True	NA	NA	NA	23894490	23887590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23889527_23889614_23889680_23889765_23889882_23892487_23892864_23892941_23893039_23893516_23893648_23893855
93105	chr7	+	1043	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	-20	14	multi-exon	FALSE	non_canonical	0	0	junction_1	0	92	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGGCTC	NA	False	NA	NA	False	NA	NA	NA	51396374	51397640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_51397056_51397278
93106	chr2	-	5225	6	NNC	ENSMUSG00000027131.4	novel	983	5	NA	NA	3439	7909	intron_retention	FALSE	non_canonical	0	0	junction_1	330.8	1	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCATGCACAATCCACCA	8443	False	NA	NA	False	NA	NA	NA	112194926	112185446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_112185486_112186801_112187944_112188116_112188298_112188850_112188985_112190760_112193700_112194136
93107	chr5	+	4477	14	NNC	ENSMUSG00000059447.14	novel	2033	16	NA	NA	8368	2	intron_retention	FALSE	non_canonical	0	0	junction_13	150.025402188347	9	90	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACTGTTCGTAGTCTCGT	NA	False	NA	NA	False	NA	NA	NA	30368668	30389582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383843_30384549_30384638_30385312_30385388_30385918_30387018_30387514
93108	chr13	-	11913	3	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	203	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCACTGCTGGAACCTGAG	NA	False	NA	NA	False	NA	NA	NA	23514186	23354576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23361382_23509000_23510673_23510750
93109	chr13	+	895	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-13	56	-13	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	37	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAAATAAAGCTTTTTG	7949	False	NA	NA	False	NA	NA	NA	74554514	74555409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
93110	chr5	-	1717	1	FSM	ENSMUSG00000104559.2	ENSMUST00000199149.2	775	1	-71	-871	-71	871	mono-exon	FALSE	NA	NA	NA	NA	NA	33	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTGTGTGTCCGTCCGT	NA	False	NA	NA	False	NA	NA	NA	111536226	111534509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_111534500_111536200
93111	chr3	-	3998	16	Antisense	novelGene_ENSMUSG00000007379.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	67	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAGTTACAAGGTGCTA	NA	False	NA	NA	False	NA	NA	NA	103077046	103039357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_103039645_103040527_103040662_103041034_103041167_103044456_103044624_103048370_103048470_103053825_103053872_103056354_103056537_103059606_103059717_103060950_103061022_103061802_103061875_103063347_103063495_103064115_103064269_103070298_103070411_103072321_103072559_103073726_103073815_103075085
93113	chr14	-	5481	22	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-60	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	75.2052972515492	78	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655297	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650185_54650242_54651024_54651105_54651336_54651471_54654045_54654228_54654833
93114	chrY	+	1014	3	Intergenic	novelGene_4710	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5773	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTATTGTTGCGACAC	NA	False	NA	NA	False	NA	NA	NA	58553135	58559898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_58553487_58559166_58559388_58559456
93115	chr1	-	6292	5	NIC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	-1951	-661	intron_retention	FALSE	canonical	3	344	junction_4	39.2874025611264	13	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATATGGTTAGCATTAC	2968	False	NA	NA	False	NA	NA	NA	88202792	88190853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88200488_88202763
93116	chr18	-	4266	2	ISM	ENSMUSG00000024515.14	ENSMUST00000131339.8	487	3	425	-3598	425	2449	3prime_fragment	FALSE	canonical	3	378	junction_1	0	4	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTGCTCCCCTCTCCCT	NA	False	NA	NA	False	NA	NA	NA	73775209	73769630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_73773541_73774853
93117	chr4	+	2791	8	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	3	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	33.3809184158512	2	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	147637736	147669649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147639766_147639872_147641551_147641685_147661528_147661587_147665698_147665826_147666658_147666774_147667290_147668023_147668275
93119	chr13	+	2463	20	Antisense	novelGene_ENSMUSG00000021196.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	27	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCAGCCTTGGAACCGCT	NA	False	NA	NA	False	NA	NA	NA	6631209	6698778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_6631628_6632437_6632544_6634638_6634727_6636503_6636628_6637087_6637150_6638524_6638690_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653498_6654990_6655081_6669225_6669322_6669556_6669601_6670921_6671090_6671943_6672128_6675169_6675249_6685959_6686037_6698608
93120	chr13	-	4110	6	Fusion	ENSMUSG00000069208.10_ENSMUSG00000112964.2	novel	1332	4	NA	NA	12	3065	multi-exon	TRUE	non_canonical	0	0	junction_1	11.5689238911837	243	42	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTCAAGTGCATGGAA	NA	False	NA	NA	False	NA	NA	NA	74642077	74579834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_74583441_74583777_74583936_74585699_74585761_74585978_74586155_74610700_74610792_74642059
93121	chr14	+	5211	13	Fusion	ENSMUSG00000040840.8_ENSMUSG00000040822.8	novel	968	6	NA	NA	-5178	-106	intron_retention	FALSE	non_canonical	0	0	junction_1	0	43	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGCGTGGGTTACTGGG	NA	False	NA	NA	False	NA	NA	NA	54882789	54924448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_54882814_54883061_54883198_54883904_54884061_54884159_54884296_54885546_54885590_54886990_54889316_54899624_54899741_54901042_54901263_54901828_54903091_54904528_54904618_54916696_54916812_54922469_54922537_54923926
93122	chr4	+	3035	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	124.272084638539	6	46	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533648	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147592042_147592098_147595209_147595337_147596801_147597189_147597356_147597931_147598098_147598351_147599018
93123	chr17	+	1136	5	NNC	ENSMUSG00000060586.12	novel	782	5	NA	NA	-146	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	83.0030119935415	1	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGCTTCATAGAGTTTCAA	NA	False	NA	NA	False	NA	NA	NA	34528402	34535174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_34528835_34533143_34533386_34534016_34534128_34534529_34534554_34534847
93124	chr6	-	3609	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-3	0	intron_retention	FALSE	canonical	3	774	junction_15	89.1993310577889	4	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3045	False	NA	NA	False	NA	NA	NA	71885737	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
93125	chr14	-	3957	2	Intergenic	novelGene_551	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGGAGAGGTGACTCAG	NA	False	NA	NA	False	NA	NA	NA	41779030	41765953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_41766279_41775398
93126	chrM	-	1465	2	Antisense	novelGene_ENSMUSG00000064359.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	19	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	6797	False	NA	NA	False	NA	NA	NA	9391	7765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7831_7991
93127	chr11	+	1816	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1095.82123884327	22	58	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265200_52265752_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
93128	chr5	-	7484	32	NNC	ENSMUSG00000035898.14	novel	6590	33	NA	NA	9	903	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_29	24.1545922926499	276	59	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGGTTTGTGTGTCC	7097	False	NA	NA	False	NA	NA	NA	86320653	86256242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_86260648_86265882_86265978_86267191_86267280_86268386_86268515_86270163_86270358_86272169_86272288_86274327_86274400_86275558_86275629_86276534_86276599_86276686_86276739_86279071_86279201_86280300_86280382_86280476_86280567_86282832_86282939_86284167_86284350_86285675_86285754_86288214_86288296_86289406_86289486_86290263_86290332_86292193_86292338_86294933_86295001_86295663_86295741_86296727_86296791_86297868_86297973_86300425_86300550_86300684_86300808_86302212_86302294_86307062_86307175_86308137_86308255_86312548_86312651_86318413_86318477_86320526
93129	chr3	-	3899	18	Fusion	ENSMUSG00000106415.2_ENSMUSG00000033439.13	novel	3402	12	NA	NA	51	403	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	8	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAACGATAAACAGAGGGA	4154	False	NA	NA	False	NA	NA	NA	116424582	116388639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_116388826_116397108_116397170_116398843_116398924_116399311_116399416_116400968_116401141_116402028_116402097_116403910_116404031_116407552_116407745_116411902_116412102_116412210_116412297_116412370_116412551_116412897_116412982_116413706_116413840_116415030_116415156_116420719_116420816_116422166_116422259_116422353_116422954_116423261
93130	chr10	-	1172	2	Intergenic	novelGene_3475	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	75	junction_1	0	103	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGACCCGTTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	74553847	74550614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74551462_74553522
93131	chr15	+	4038	15	ISM	ENSMUSG00000022142.9	ENSMUST00000163765.3	7832	35	30601	1391	-3172	1032	3prime_fragment	FALSE	canonical	3	220	junction_1	37.3103366976204	1	91	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTAGTTGTGTTTCCAT	271	False	NA	NA	False	NA	NA	NA	8169357	8189340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_8169433_8170712_8170844_8172451_8172644_8173534_8173674_8174971_8175108_8176626_8176781_8176981_8177087_8177780_8177936_8180241_8180372_8181196_8181311_8182599_8182721_8183123_8183235_8184399_8184537_8186169_8186277_8187109
93132	chr17	-	3555	12	NIC	ENSMUSG00000024045.7	novel	4183	13	NA	NA	4	-5	intron_retention	FALSE	canonical	3	426	junction_6	73.0315226856535	157	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATTTTTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	32540208	32523671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32536321_32536819_32536853_32537744_32537784_32540058
93133	chr11	-	1925	4	FSM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	-48	-1256	17	-3	multi-exon	FALSE	canonical	3	324	junction_3	34.4222150491349	905	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCGTATTTCCATAGC	NA	False	NA	NA	False	NA	NA	NA	115503778	115498746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115500262_115500364_115500475_115502728_115502861_115503610
93135	chr15	-	8339	3	ISM	ENSMUSG00000055065.8	ENSMUST00000229431.2	2821	11	9090	-6886	9086	-39	3prime_fragment	FALSE	canonical	3	84	junction_2	6	8	92	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTTTTGTAGGTATAA	8186	False	NA	NA	False	NA	NA	NA	79421670	79411975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79420218_79421197_79421260_79421635
93136	chr10	+	5357	6	FSM	ENSMUSG00000019817.19	ENSMUST00000121646.8	5260	6	-97	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	38.4416440855487	318	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGTCTTTTCATTTA	2913	False	NA	NA	False	NA	NA	NA	12966434	13007438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_12966769_12981598_12981638_12988262_12988295_12992439_12992526_13000599_13000913_13002885
93138	chr4	+	1468	9	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-13	3476	multi-exon	FALSE	canonical	0	0	junction_8	171.927991830882	192	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311759	145434487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422723_145422806_145425813_145425941_145427474_145427580_145433992
93139	chr3	+	2430	12	Antisense	novelGene_ENSMUSG00000105201.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCTGGCGGTGACGACA	NA	False	NA	NA	False	NA	NA	NA	157716555	157742221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157717841_157717946_157718088_157718412_157718443_157721982_157722099_157723452_157723527_157724945_157725077_157727012_157727063_157727596_157727690_157728477_157728594_157732367_157732496_157737088_157737285_157742151
93140	chr18	-	4062	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	67	597	7	-597	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATCTTATCACTGTTTA	7	True	NA	NA	False	NA	NA	NA	10030074	9993662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
93141	chr7	+	2402	7	NIC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	6684	junction_1	724.883132343108	10	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46501419_46503406_46503531_46504400
93143	chr3	-	3437	28	NIC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-5	-4	combination_of_known_junctions	FALSE	canonical	3	85	junction_1	259.770316402684	3	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGATCTCTCACCTTAAT	3542	False	NA	NA	False	NA	NA	NA	89959787	89907450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89907561_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
93144	chr9	+	2915	11	Intergenic	novelGene_1072	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCCAGAAAACTGAGCGAG	NA	False	NA	NA	False	NA	NA	NA	58125823	58157016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58126011_58126792_58126953_58127105_58127853_58128997_58129152_58136640_58136691_58137110_58137369_58137772_58137914_58140437_58140531_58141635_58142217_58154257_58154725_58156939
93145	chr18	+	2559	8	NIC	ENSMUSG00000024234.8	novel	2651	9	NA	NA	6	0	intron_retention	FALSE	canonical	1	3	junction_7	77.1222194616693	642	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTGATAACAGTATTTCTA	6	True	NA	NA	False	NA	NA	NA	4375609	4397330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4396104
93146	chr6	-	2967	10	NNC	ENSMUSG00000085589.8	novel	2427	3	NA	NA	10386	31569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	35	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCAGCTTCCGGGAACG	NA	False	NA	NA	False	NA	NA	NA	86447366	86415689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_86416240_86420707_86420956_86422413_86423250_86424291_86424401_86426738_86426847_86430589_86430695_86434796_86434900_86439557_86439662_86442780_86442945_86446726
93147	chr13	+	1481	5	ISM	ENSMUSG00000021540.17	ENSMUST00000109876.8	4570	7	342	6753	-274	-7	5prime_fragment	FALSE	canonical	3	10	junction_1	34.4855042010408	54	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGATACAACTAGTCT	NA	False	NA	NA	False	NA	NA	NA	56851206	56881020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_56851390_56871241_56871810_56875216_56875469_56876322_56876443_56880662
93148	chr15	+	6575	5	Antisense	novelGene_ENSMUSG00000041852.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	236	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGCAGAAGACTGGTA	NA	False	NA	NA	False	NA	NA	NA	82692679	82740691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_82693987_82695159_82695304_82699809_82699862_82709431_82709526_82735713
93149	chr13	-	3250	7	NNC	ENSMUSG00000094870.9	novel	3067	7	NA	NA	-536	-4	intron_retention	FALSE	canonical	2	6	junction_6	59.9666574022598	231	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTATTTTATGTGTATGG	NA	False	NA	NA	False	NA	NA	NA	120252961	120226727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252746
93150	chr4	-	13392	81	Fusion	ENSMUSG00000028465.17_ENSMUSG00000028467.16	novel	8393	57	NA	NA	-24	1	multi-exon	FALSE	non_canonical	0	0	junction_40	91.2391560337446	675	20	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCAGCCTGGCTTTATGA	-1	True	NA	NA	False	NA	NA	NA	43578660	43531517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_43532086_43532191_43532321_43532829_43533013_43533125_43533189_43533303_43533430_43533553_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529_43540674_43542480_43542604_43542701_43542792_43542874_43542969_43543143_43543284_43543435_43543634_43543816_43543937_43544279_43544489_43544575_43544679_43544840_43544970_43545093_43545229_43545406_43545521_43545605_43545723_43545859_43545989_43546749_43546917_43547501_43547797_43547978_43548147_43549081_43549185_43549320_43549530_43549722_43549832_43549937_43550052_43550197_43550379_43550961_43551039_43551185_43551288_43552985_43553142_43553445_43553551_43554277_43554339_43555046_43555175_43555268_43555412_43555601_43555755_43555854_43555985_43556288_43556387_43556620_43556784_43562129_43562958_43563047_43563203_43563277_43563355_43563471_43563554_43565255_43565366_43565464_43565534_43566114_43566202_43566289_43566378_43566467_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569662_43569829_43569956_43570036_43570191_43570345_43570449_43570671_43570912_43571188_43571408_43573750_43573867_43574027_43574120_43578015
93151	chr3	-	4837	10	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	0	-3	combination_of_known_junctions	FALSE	canonical	3	16	junction_9	41.4428060444694	181	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94922549	94913903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922421
93153	chr19	+	853	3	NNC	ENSMUSG00000024661.8	novel	903	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2912	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4927	False	NA	NA	False	NA	NA	NA	9960067	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9960348_9961544_9961809_9962148
93154	chr4	+	458	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	16	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	9	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGTGGTTTATCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	152410325	152416937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
93155	chr17	+	2633	11	NNC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	727.149950147836	40	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	NA	False	NA	NA	NA	56611347	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620232_56627157_56627283_56627396_56627543_56629020_56629126_56629355
93156	chr2	+	4403	14	NNC	ENSMUSG00000026643.17	novel	4461	14	NA	NA	-5	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	76.2951292387799	31	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAATCATTGTTTTGAGT	982	False	NA	NA	False	NA	NA	NA	3285243	3329903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310617_3313512_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
93157	chr1	+	5881	20	Antisense	novelGene_ENSMUSG00000098259.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGTCTTGGAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	162499362	162532342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162501229_162503174_162503415_162504262_162504386_162504922_162505028_162505578_162505793_162507063_162507171_162507388_162507627_162508328_162508466_162508789_162508903_162509886_162510093_162511625_162511826_162515684_162515785_162518707_162518805_162519943_162520194_162520304_162520493_162523845_162523933_162525001_162525841_162526445_162526601_162529748_162529959_162531936
93158	chrM	+	2609	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1027	0	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	1	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	-3	True	NA	22	True	NA	NA	NA	1093	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
93159	chr4	+	2363	7	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4876	182328	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	69.7654801619126	3	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395006	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409276_147409335_147413438_147413566_147415724_147416261_147416680_147417135_147417352_147418018_147600136
93160	chr6	-	3846	14	FSM	ENSMUSG00000030304.12	ENSMUST00000136008.8	4174	14	328	0	-24	0	multi-exon	FALSE	canonical	3	798	junction_5	68.0164442351299	768	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	148113544	148080576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_148083238_148083385_148083469_148084543_148084707_148089530_148089629_148090983_148091083_148092327_148092384_148096692_148096789_148097495_148097598_148100853_148100895_148102913_148102985_148103993_148104041_148106273_148106383_148108030_148108174_148113467
93161	chrX	+	3756	17	Antisense	novelGene_ENSMUSG00000031386.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	72	33	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAACATGGCGGCTATCGG	6064	False	NA	NA	False	NA	NA	NA	72993423	73010599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72994308_72994848_72995063_72995250_72995396_72995528_72995673_72995776_72995999_72996167_72996273_72996431_72996650_72996923_72997131_72998188_72998347_72998617_72998982_72999062_72999247_73000176_73000280_73000992_73001078_73001857_73002065_73002726_73002889_73003188_73003342_73010398
93162	chr4	+	2513	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	3	182332	multi-exon	FALSE	non_canonical	0	0	junction_1	167.376073558917	33	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTGCTTTGGTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	147216497	147600523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147316807_147316901_147390101_147390233_147393100_147393185_147413438_147413566_147415724_147415863_147416528_147416838_147416922_147418091_147600209
93163	chr3	+	3377	23	NNC	ENSMUSG00000028034.16	novel	4525	22	NA	NA	-50248	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	533.97715809939	5	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATGAGTGTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	151865810	151942461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151865818_151916283_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151939239_151939340_151940160_151940208_151941104
93164	chr15	+	2955	13	FSM	ENSMUSG00000022253.18	ENSMUST00000190591.10	4135	13	453	727	26	304	multi-exon	FALSE	canonical	3	112	junction_7	89.5046553724069	223	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGTTTTCTTATTTC	106	False	NA	NA	False	NA	NA	NA	9071792	9110252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9098897_9098964_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
93165	chr19	+	2330	13	NNC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	38	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	325.939273058989	2	44	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTGTGATTTTCAGA	107	False	NA	NA	False	NA	NA	NA	46064530	46072901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068352_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
93166	chr1	-	4902	20	Antisense	novelGene_ENSMUSG00000026187.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	51	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCATGCTGGTCCTCAGG	NA	False	NA	NA	False	NA	NA	NA	72434106	72346712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_72346720_72349587_72349706_72351564_72351749_72353307_72353362_72354617_72354740_72358157_72358348_72364230_72364347_72365373_72365512_72369082_72369196_72373792_72373856_72378116_72378255_72379145_72379237_72382165_72382300_72385384_72385584_72393401_72396044_72420775_72420885_72422510_72422613_72422859_72422927_72433052_72433126_72433864
93167	chr14	-	4697	19	FSM	ENSMUSG00000022185.20	ENSMUST00000147714.8	4383	19	-326	12	-11	-7	multi-exon	FALSE	canonical	3	51	junction_16	159.32330861072	451	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGACTAGCATTTGAGT	2619	False	NA	NA	False	NA	NA	NA	54924399	54879630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
93168	chr13	-	10828	4	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	98	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGATAAACCCGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	23514186	23355353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23361359_23508976_23510673_23510750_23513672_23513980
93169	chr12	-	7636	5	Antisense	novelGene_ENSMUSG00000113368.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	107	140	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATAATATCCCTTCCCCA	NA	False	NA	NA	False	NA	NA	NA	17298227	17175133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_17177992_17178204_17179359_17293956_17294598_17294649_17295108_17295702
93170	chr13	-	2019	5	NNC	ENSMUSG00000113559.2	novel	1588	5	NA	NA	-8283	-553	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	72.3234920340549	11	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTGGCTATCATTGC	NA	False	NA	NA	False	NA	NA	NA	66138888	66125086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66126651_66126851_66126938_66127142_66127161_66128413_66128630_66138753
93171	chr14	+	3370	9	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	10	-1192	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	2441.42554412376	13	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTATCTGAAATTCAAGT	NA	False	NA	NA	False	NA	NA	NA	63359920	63382180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376523_63379680
93172	chrM	+	841	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	119	-3	119	3	mono-exon	FALSE	NA	NA	NA	NA	NA	228	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	11	False	NA	-33	True	NA	NA	NA	2869	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2900_3700
93173	chrM	-	865	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATGTACCCTAAGATTTT	9986	False	NA	-1	True	NA	NA	NA	3710	2845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2800_3700
93174	chr13	-	4505	7	NNC	ENSMUSG00000021510.12	novel	9455	4	NA	NA	45	56604	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.3166562369588	18	76	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGGAAGAAACATAGATTGG	NA	False	NA	NA	False	NA	NA	NA	67785865	67704277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67704295_67704838_67705024_67705065_67705844_67766766_67769969_67771586_67771683_67772153_67772281_67785765
93175	chr2	+	4322	4	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-8576	2164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.24264068711928	17	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAACTTGTTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	174919717	174933875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174919822_174928293_174928421_174928631_174928693_174929845
93176	chr5	-	4080	26	NIC	ENSMUSG00000029480.14	novel	4760	27	NA	NA	34	382	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	34.8969683497005	387	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCTGGCTATTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	125511151	125491469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_125492231_125492929_125493004_125493087_125493183_125493363_125493502_125493595_125493711_125494485_125494659_125495513_125495631_125495722_125495848_125496024_125496214_125496297_125496405_125498071_125498184_125499182_125499416_125499668_125499746_125500490_125500636_125501688_125501766_125502002_125502099_125502485_125502601_125502735_125502838_125503714_125503829_125504496_125504594_125505377_125505471_125506225_125506375_125506768_125507109_125507882_125507996_125508660_125508831_125510998
93177	chr15	+	1692	4	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98453	-144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATAGTGCTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	98829318	98935847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98829931_98830050_98830303_98934969_98935111_98935160
93178	chr14	-	4643	21	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-67	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.6224007817789	2	14	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655304	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045_54654228_54655205
93179	chr2	-	3264	26	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	42	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	216.091151137662	8	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGACCTAGTTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	127673682	127643042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649779_127649825_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655840_127656554_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
93181	chr7	-	905	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	63	0	18	0	multi-exon	TRUE	canonical	3	56898	junction_1	7359.57672393974	60	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109245	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
93184	chr11	-	3223	10	NIC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	16927	junction_7	1895.24750655715	33	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113077	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33102853_33103985_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
93185	chr2	+	1536	8	NNC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4088.01781217414	2	25	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGATCTCAAAAGTTGCT	7475	False	NA	NA	False	NA	NA	NA	75489604	75496448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492398_75493977_75494059_75495371_75495495_75495577_75495646_75495741
93186	chr13	-	2313	4	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-19305	1967	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	128.222029655161	1	36	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAACCCTCTGAATGTAA	NA	False	NA	NA	False	NA	NA	NA	65787362	65761670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65761711_65761787_65763903_65764103_65764190_65787290
93187	chr3	-	3567	16	Antisense	novelGene_ENSMUSG00000033386.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTCAGGAGCAAAAGCAAAG	NA	False	NA	NA	False	NA	NA	NA	116698487	116659834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_116659924_116671879_116672098_116674413_116674550_116675403_116675502_116676697_116676846_116678755_116678938_116684552_116684652_116685487_116685636_116689135_116689250_116690325_116690440_116692808_116692898_116694253_116694349_116694599_116694659_116695960_116696105_116696576_116696639_116696715
93188	chr7	-	6428	5	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-51	334	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	65.3657976314831	2	27	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATATATTGAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	27713591	27683944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27713445
93189	chr1	-	2624	13	NNC	ENSMUSG00000048495.17	novel	766	9	NA	NA	-8855	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	60.1269490328588	1531	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGGAGTGGCCGTCTTT	NA	False	NA	NA	False	NA	NA	NA	57455115	57427393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57432828_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542_57446380_57449068_57449141_57450879_57451006_57452395_57452547_57454814
93190	chr14	-	3864	3	Intergenic	novelGene_641	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGTCTTGGCTACATT	NA	False	NA	NA	False	NA	NA	NA	112608909	112603670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_112603795_112605034_112608346_112608480
93191	chr15	+	5262	5	Antisense	novelGene_ENSMUSG00000033228.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	153	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCTCTTTGTGAGGTAAC	NA	False	NA	NA	False	NA	NA	NA	96309583	96317368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96312796_96312910_96313033_96313657_96313831_96314731_96315071_96315952
93192	chr2	-	2774	17	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-2869	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	220.923266868273	2	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGACCTAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	127659699	127643044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127651217_127651350_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171
93194	chr14	-	4949	20	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-25	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	75.8053345976561	1	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655181	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045_54654228_54655113
93195	chr2	+	2508	9	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	526.08809861087	16	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	659	False	NA	NA	False	NA	NA	NA	26279365	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281156_26283308_26283400_26283529_26283593_26285036_26285182_26285430
93196	chr2	+	3338	20	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	0	-1308	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	246.943094592173	406	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGAGGATGTTCATGG	7222	False	NA	NA	False	NA	NA	NA	23046529	23087964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23053988_23054077_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
93197	chr1	+	1092	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10527.4312726325	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454443	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456906_86456967_86457177_86457275_86457452_86457527_86457686_86457997_86458097
93199	chr3	-	1935	12	NIC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	2	-3	intron_retention	FALSE	canonical	3	691	junction_6	35.1976708470582	142	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACCCAGTGTGTAGGGA	NA	False	NA	NA	False	NA	NA	NA	88821236	88816953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873
93200	chr3	-	3601	25	FSM	ENSMUSG00000042520.17	ENSMUST00000090908.11	3629	25	6	22	6	-22	multi-exon	FALSE	canonical	3	158	junction_17	264.856079891619	334	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAACAAAAACAACAAAAC	3576	False	NA	NA	False	NA	NA	NA	89959753	89913322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
93201	chr17	+	2033	11	NIC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	18	-3	intron_retention	FALSE	canonical	3	3235	junction_8	171.082553172438	42	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACCACCTGGGTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	13135286	13143440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142581_13143146
93202	chr12	+	5407	24	FSM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	-2	-407	-2	407	multi-exon	FALSE	canonical	3	75	junction_5	14.334249175764	182	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAAGGTGATTTTT	3379	False	NA	NA	False	NA	NA	NA	71062761	71145773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581_71118667_71119363_71119506_71121709_71122844_71123216_71123322_71133228_71133436_71134234_71134382_71144274
93203	chr17	+	2225	7	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-66	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	107.570777733649	77	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17284308	17309885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17308603_17308685_17308915_17309250_17309519_17309602
93204	chr2	+	1062	6	NNC	ENSMUSG00000027078.15	novel	1560	4	NA	NA	21	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	95.4743944730732	4	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCGTTTCTCGTGG	NA	False	NA	NA	False	NA	NA	NA	84629198	84640342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348_84639580_84639659_84639994_84640206
93205	chr11	+	4065	1	Intergenic	novelGene_2348	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATGAAAGACCCACAAC	NA	False	NA	NA	False	NA	NA	NA	57446682	57450747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57446700_57450700
93206	chr17	+	2057	1	Intergenic	novelGene_193	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTGTGGTTTGGAGGGC	NA	False	NA	NA	False	NA	NA	NA	40153887	40155944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
93207	chr11	+	2447	6	NNC	ENSMUSG00000001105.16	novel	1167	5	NA	NA	3	11215	intron_retention	FALSE	non_canonical	0	0	junction_5	176.670767248009	208	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAGCAGAGCCAGCAGAA	NA	False	NA	NA	False	NA	NA	NA	78427256	78443778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78433558_78443758
93208	chr17	+	1705	5	NIC	ENSMUSG00000037805.16	novel	553	5	NA	NA	0	1	intron_retention	FALSE	canonical	3	5715	junction_1	1247.01984747637	21	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTGCCACTCAGCCTTG	NA	False	NA	NA	False	NA	NA	NA	28547556	28549992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28549672_28549803
93209	chr16	-	564	1	Intergenic	novelGene_3751	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
93210	chr16	+	4305	6	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	1	-6	intron_retention	FALSE	canonical	3	1632	junction_1	180.111743093003	4	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTATATAGGTGGTCTG	6063	False	NA	NA	False	NA	NA	NA	22926517	22932690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
93211	chr3	-	6710	25	NNC	ENSMUSG00000027883.16	novel	3498	15	NA	NA	27	24680	intron_retention	FALSE	non_canonical	0	0	junction_1	55.0590434341979	21	104	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCCCGAGCGGACTCAT	NA	False	NA	NA	False	NA	NA	NA	108629405	108561273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_108561368_108568670_108568810_108569245_108569348_108570837_108570948_108575278_108575500_108576013_108576154_108578215_108578310_108580133_108580233_108580588_108580741_108581950_108582280_108584000_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604260_108604395_108604843_108604953_108606233_108606390_108607984_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180_108610403_108618592_108618897_108629356
93213	chr7	+	3407	29	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-83114	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	408.316283657657	455	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGTGAGGAGGTCTAC	700	False	NA	NA	False	NA	NA	NA	12928124	13045349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12928133_13012790_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034597_13034831_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
93214	chr8	+	4440	17	NNC	ENSMUSG00000031565.19	novel	1903	13	NA	NA	-7417	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	82.2093364527412	227	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCAGGTCTACTTGACTC	NA	False	NA	NA	False	NA	NA	NA	26038215	26065728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_26038487_26045523_26045791_26047746_26047837_26048086_26048260_26050735_26050860_26052153_26052345_26054355_26054501_26056726_26056930_26058203_26058350_26059654_26059777_26060156_26060268_26060725_26060917_26062353_26062477_26062734_26062806_26063138_26063277_26063561_26063668_26063760
93215	chr4	+	3021	6	NNC	ENSMUSG00000085525.8	novel	282	3	NA	NA	-79	40406	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	92.5518233207753	6	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTTAATTCAAATGAGC	NA	False	NA	NA	False	NA	NA	NA	146206821	146255410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209557_146214925_146215005_146250678_146250737_146251579_146251707_146253158
93216	chr8	-	3070	7	NNC	ENSMUSG00000055553.17	novel	917	7	NA	NA	-7651	-8673	intron_retention	FALSE	non_canonical	0	0	junction_1	0	33	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCCCCCGCGCACCCATT	NA	False	NA	NA	False	NA	NA	NA	70988257	70980393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70980485_70982038_70982322_70983583_70983755_70983829_70983921_70984168_70985398_70986764_70986843_70987130
93217	chr4	-	2231	3	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGGTGAGTGGAACACAA	NA	False	NA	NA	False	NA	NA	NA	145178226	145173132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145173339_145176033_145176319_145176486
93218	chr15	-	6238	4	ISM	ENSMUSG00000041852.16	ENSMUST00000048966.7	7417	5	54849	1031	42526	-841	3prime_fragment	FALSE	canonical	3	113	junction_3	13.9522996909709	77	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGTCTGGAAAGACTT	NA	False	NA	NA	False	NA	NA	NA	82741486	82693667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_82693989_82699811_82699862_82709431_82709526_82735713
93219	chr2	+	1448	10	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	7	0	intron_retention	FALSE	canonical	3	31	junction_8	77.9635875755748	28	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5688	False	NA	NA	False	NA	NA	NA	22785613	22830278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22825570_22825652_22829834
93220	chr5	+	381	1	Intergenic	novelGene_919	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	304	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTTCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
93221	chr12	+	4487	4	Intergenic	novelGene_4453	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	30	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTCCAACTGGTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	101362094	101472015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_101362737_101414497_101418174_101471336_101471343_101471852
93222	chrX	+	1631	3	ISM	ENSMUSG00000079435.10	ENSMUST00000113211.8	483	5	32	55	-3	5	intron_retention	FALSE	canonical	3	11259	junction_1	1303	16	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGATTGCAGTTGTTCGT	NA	False	NA	NA	False	NA	NA	NA	133486434	133488750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_133486469_133486826_133486933_133487259
93223	chr11	+	4351	20	FSM	ENSMUSG00000000976.14	ENSMUST00000125831.8	4067	20	291	-575	-24	575	multi-exon	FALSE	canonical	2	8	junction_1	14.4999761199536	8	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAGTTATTTCCATCC	4326	False	NA	NA	False	NA	NA	NA	83644830	83673422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_83644972_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
93224	chr9	-	3925	14	Antisense	novelGene_ENSMUSG00000111030.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAAACCTCCGCCCGCCCCC	1330	False	NA	NA	False	NA	NA	NA	44549920	44516166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_44516224_44518418_44518890_44524124_44524188_44525507_44525612_44534913_44535044_44535769_44535917_44537682_44537778_44538932_44539056_44539932_44540066_44541319_44541435_44542676_44542741_44545386_44545490_44546977_44547163_44547785
93225	chr13	-	5563	28	ISM	ENSMUSG00000021357.15	ENSMUST00000102946.8	4375	29	2563	5	2563	-5	3prime_fragment	FALSE	canonical	3	27	junction_27	28.4917623404029	183	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTATGTTGTGTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	31131718	30997906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31130347
93226	chr1	-	1225	7	NNC	ENSMUSG00000026035.16	novel	1033	7	NA	NA	5	-10	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	97.3396116696589	7	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTATCACATGTGAGT	NA	False	NA	NA	False	NA	NA	NA	58484583	58470165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58470490_58471230_58471497_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58484304
93227	chrX	-	3727	5	NIC	ENSMUSG00000031167.17	novel	1055	7	NA	NA	-7	67	intron_retention	FALSE	canonical	3	529	junction_1	300.177447520629	196	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCAGTGAGAGATTAAAGG	6554	False	NA	NA	False	NA	NA	NA	8011943	8006955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009572_8009896_8009991_8010086_8010919_8011193_8011312_8011876
93228	chrM	-	969	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCATCGGGTAATAATAATA	-66	True	NA	NA	False	NA	NA	NA	11544	10575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10600_11500
93229	chr4	+	2281	6	NNC	ENSMUSG00000087207.9	novel	585	4	NA	NA	-11	808	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	207.521179641983	7	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	4099	False	NA	NA	False	NA	NA	NA	147314729	147344603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147314893_147316807_147316901_147321238_147321326_147323106_147323187_147337753_147337859_147342850
93230	chr3	-	1899	6	Antisense	novelGene_ENSMUSG00000090005.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAACCAGGCT	NA	False	NA	NA	False	NA	NA	NA	89969753	89960224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_89960915_89963511_89963632_89963835_89963887_89965788_89965958_89966047_89966108_89968944
93231	chr17	-	1504	2	Intergenic	novelGene_95	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	88	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCCTTGCCCTTCACAAA	NA	False	NA	NA	False	NA	NA	NA	23097164	23095222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_23095863_23096300
93232	chr2	-	2009	1	Antisense	novelGene_ENSMUSG00000086454.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	330	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGTCTCAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	104399270	104397261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_104397300_104399300
93233	chr7	-	769	1	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTCGTGGTTCACACCC	NA	False	NA	NA	False	NA	NA	NA	51397625	51396856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51396900_51397600
93234	chr9	+	1852	1	NIC	ENSMUSG00000032097.11	novel	6065	14	NA	NA	16943	-9725	mono-exon	FALSE	NA	NA	NA	NA	NA	36049	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCTACCTCATCCCCTTA	NA	False	NA	NA	False	NA	NA	NA	44533136	44534988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_44533100_44535000
93235	chr9	+	2973	16	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	7	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	97.3783001152378	62	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAATAAGTAACATAAGT	NA	False	NA	NA	False	NA	NA	NA	56979330	57035639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56979348_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018202_57035334
93237	chr19	-	2390	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCAATTTGCAACAAGACC	NA	False	NA	NA	False	NA	NA	NA	22705271	22699851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22702208_22705023
93238	chr9	-	348	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	26	0	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	18	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7274	False	NA	NA	False	NA	NA	NA	114811807	114811459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_114811500_114811800
93239	chr17	-	3487	7	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	21	-110	intron_retention	FALSE	canonical	3	1657	junction_4	228.054391660313	7	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTTCTGTTTTTAGAAT	NA	False	NA	NA	False	NA	NA	NA	80514711	80507663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
93240	chrM	+	1553	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	447	580	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	117	False	NA	8	True	NA	NA	NA	12188	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13470_13873
93241	chr2	-	8499	36	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	102	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGCCCGTCACAAAAGTCAA	NA	False	NA	NA	False	NA	NA	NA	52012358	51961589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51961657_51963145_51963264_51964256_51964336_51965239_51965329_51966090_51966186_51966988_51967120_51967203_51967298_51968340_51968533_51971237_51971329_51972674_51972814_51975036_51975189_51978657_51978773_51979530_51979696_51980180_51980295_51982051_51982115_51982289_51982390_51983509_51983602_51984600_51984675_51985833_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993710_51994557_51994599_51995444_51995650_51996912_51997013_51997649_51997768_51998449_51998603_51999202_51999288_51999362_51999413_51999920_52003011_52006257_52006402_52006841_52006962_52009027_52009181_52010269_52010379_52011001
93242	chr19	+	427	1	ISM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	3150	1170	3040	2	mono-exon	FALSE	NA	NA	NA	NA	NA	152	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTTTTGGGTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	5543632	5544059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5543600_5544100
93243	chr7	+	1427	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2882.58672099932	39	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497102_46498485_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
93244	chr1	+	2302	8	NNC	ENSMUSG00000003135.16	novel	2097	5	NA	NA	-240279	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	347.945749935186	223	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CACAAAATAAAAAATGTAAT	NA	False	NA	NA	False	NA	NA	NA	39333793	39585563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_39333855_39465744_39465756_39576501_39576662_39577351_39577505_39578953_39579157_39581480_39581684_39583972_39584070_39584149
93245	chr2	+	3924	6	NNC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-41	1059	intron_retention	TRUE	non_canonical	0	0	junction_5	96.7892556020553	780	36	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCCAACTGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	177189966	177202615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177194885_177194988_177198701_177198829_177199035_177200855_177200938
93247	chr2	+	4911	5	FSM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	23	1644	-18	1240	multi-exon	FALSE	canonical	3	111	junction_4	50.7413785780402	195	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGTTTTCACTGTAGA	7028	False	NA	NA	False	NA	NA	NA	181162300	181195282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181191065
93249	chr2	+	2636	15	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-35333	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	347.893808569248	14	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAAAAGAAGACTTGGGG	NA	False	NA	NA	False	NA	NA	NA	5814496	5873543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_5814834_5815610_5815654_5826084_5826193_5827911_5828017_5838450_5838524_5846762_5846836_5849645_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871043_5871219_5872899
93250	chr11	-	1358	8	NIC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-87	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_6	10166.7414039854	70	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6380	False	NA	NA	False	NA	NA	NA	69812103	69807545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69811166_69811261_69811988
93251	chr1	+	671	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	-53	-135	-53	135	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGAGGCAGATGTGTTA	NA	False	NA	NA	False	NA	NA	NA	43228262	43228933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43228300_43228900
93252	chrM	+	1018	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-58	-3	-58	3	mono-exon	FALSE	NA	NA	NA	NA	NA	25	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	269	False	NA	51	True	NA	NA	NA	2692	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
93253	chr1	-	2806	15	NNC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-8	-422	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	195.817504064267	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGTCTGCACTTTGC	NA	False	NA	NA	False	NA	NA	NA	58544122	58502351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541046_58543930
93254	chr3	+	3091	11	NIC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	0	0	intron_retention	FALSE	canonical	3	1252	junction_8	71.3178799460556	18	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	90383453	90395686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90394405_90394533_90394625_90394765
93257	chr9	+	2594	12	NNC	ENSMUSG00000032279.12	novel	2403	11	NA	NA	-1	12522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	552.059824282457	34364	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAGTACTTAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	54493763	54524467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565_54511935_54524296
93258	chr2	-	3069	13	NNC	ENSMUSG00000026925.17	novel	4147	10	NA	NA	2347	6901	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	118	41	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTCACTTCCGCTTCCGA	7606	False	NA	-68	True	NA	NA	NA	26287136	26279359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26279443_26279945_26280151_26280239_26280331_26280511_26280588_26281093_26281188_26281874_26281979_26282423_26282686_26282915_26282990_26283106_26283162_26283288_26283400_26283529_26283592_26285035_26285182_26285430
93259	chr18	+	6916	1	Genic_Genomic	ENSMUSG00000024576.15	novel	NA	NA	NA	NA	544	242	mono-exon	FALSE	NA	NA	NA	NA	NA	19	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTATTGTAACTCAACTA	NA	False	NA	NA	False	NA	NA	NA	61716458	61723374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_61716500_61723400
93260	chr13	+	5197	4	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-50	2816	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	87.1818023825309	393	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTATGTCTTTCAAATCC	NA	False	NA	NA	False	NA	NA	NA	62163747	62201616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196726
93261	chr2	-	1720	6	NNC	ENSMUSG00000072980.4	novel	1082	6	NA	NA	74	1175	intron_retention	TRUE	non_canonical	0	0	junction_1	261.582415311121	54	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAAAATAAAAATTGTTC	7554	False	NA	NA	False	NA	NA	NA	119448876	119438817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_119438985_119440143_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334
93262	chr1	+	3612	14	FSM	ENSMUSG00000026439.15	ENSMUST00000190997.7	2856	14	15	-771	15	1	multi-exon	FALSE	canonical	3	60	junction_13	83.2346081867393	181	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGTATACATGCTTGTT	NA	False	NA	NA	False	NA	NA	NA	132405119	132433398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
93263	chr17	-	1934	12	Antisense	novelGene_ENSMUSG00000007564.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAATAAGAACACAAAGTT	NA	False	NA	NA	False	NA	NA	NA	21186167	21176048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21176287_21176970_21177117_21177221_21177373_21178979_21179095_21179199_21179270_21179647_21179784_21180725_21180902_21181214_21181275_21181845_21182002_21182835_21182976_21185497_21185590_21185713
93265	chr16	+	9925	30	Antisense	novelGene_ENSMUSG00000103937.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	365	55	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCCAAAATCTAGAAATTAA	9506	False	NA	NA	False	NA	NA	NA	3899215	3997988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_3904065_3905546_3905824_3906104_3906269_3909654_3909821_3910047_3910218_3911333_3911452_3912039_3912178_3912492_3912650_3913925_3913993_3914304_3914386_3917545_3917593_3919418_3919505_3925293_3925381_3925899_3926139_3926962_3927083_3932637_3932828_3933641_3933820_3935116_3935532_3936895_3937086_3937595_3937720_3942032_3942079_3942499_3942671_3943507_3943627_3944330_3944478_3944733_3944836_3946306_3946551_3955229_3955344_3956608_3956850_3972720_3972898_3997287
93266	chr2	-	2933	3	NIC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	137	-124	intron_retention	FALSE	canonical	3	2404	junction_1	61.5	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGCAGTGCCGCCTTTGT	8362	False	NA	NA	False	NA	NA	NA	132095097	132091205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132093679_132093822_132093921_132094735
93268	chr11	-	1077	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	-26	0	-26	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427128	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
93269	chrX	-	2521	10	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	-2	40	intron_retention	FALSE	canonical	0	0	junction_1	143.566477052734	49	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTACGGTGTTTGTCCCT	NA	False	NA	NA	False	NA	NA	NA	156275042	156228651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156229260_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
93270	chr11	+	3918	20	Intergenic	novelGene_2436	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	88	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGATGAATTCGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	85952004	86092006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_85952870_85955601_85955927_85965103_85965188_85968682_85968799_85999592_85999715_86001168_86001329_86026084_86026245_86029583_86029729_86029838_86030006_86034082_86034240_86036889_86037021_86039183_86039386_86043415_86043635_86048412_86048703_86077788_86077922_86080559_86080686_86083640_86083815_86088694_86088809_86089699_86089821_86091899
93271	chr19	-	8558	25	NNC	ENSMUSG00000024943.10	novel	5683	25	NA	NA	-10	-477	intron_retention	FALSE	canonical	0	0	junction_8	128.25330296808	10	116	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGTTAAAAATATTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	23251192	23184291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23192518_23195895_23199863_23199998_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
93272	chr19	+	16864	5	FSM	ENSMUSG00000069833.14	ENSMUST00000092956.4	18100	5	4	1232	4	-1232	multi-exon	FALSE	canonical	3	15	junction_4	26.3853652618265	438	154	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAAATTCTCCCTATT	NA	False	NA	NA	False	NA	NA	NA	8966651	8995328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_8979062
93273	chr18	-	3894	3	Genic_Genomic	ENSMUSG00000073647.5	novel	619	1	NA	NA	-390	3135	multi-exon	FALSE	non_canonical	0	0	junction_1	0	417	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAAAGTAATTACTAT	6	False	NA	NA	False	NA	NA	NA	4199328	4195184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_4196028_4196085_4198736_4198927
93274	chr11	+	5139	3	Intergenic	novelGene_2337	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	133	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGAGTAGCTGGGTAAG	NA	False	NA	NA	False	NA	NA	NA	57445641	57450918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57445786_57445827_57450433_57450528
93275	chr17	-	1613	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	152	884	54	800	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	1	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36149046	36145696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
93276	chr16	-	564	1	Intergenic	novelGene_3752	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
93277	chr14	+	3261	21	NNC	ENSMUSG00000047098.19	novel	3485	21	NA	NA	-5	-60	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.2986257728488	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGGACTTCCTGACCCAG	4205	False	NA	NA	False	NA	NA	NA	55829195	55841061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55829530_55829625_55829773_55830021_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
93278	chr14	-	6694	10	NNC	ENSMUSG00000022223.10	novel	813	6	NA	NA	21	12218	intron_retention	FALSE	non_canonical	0	0	junction_1	50.4557011424653	74	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGGCCTGGGGCTGGGAGC	NA	False	NA	NA	False	NA	NA	NA	56137599	56122521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_56122599_56123229_56123447_56123946_56125076_56125170_56125300_56125375_56125473_56131446_56131556_56131742_56131843_56132316_56136763_56137103_56137378_56137483
93279	chr11	-	649	2	NNC	ENSMUSG00000020743.16	novel	1656	5	NA	NA	2995	-3	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	0	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGCGTATTTCCATAGC	NA	False	NA	NA	False	NA	NA	NA	115499957	115498746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115499325_115499886
93280	chr13	+	1844	10	NNC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-11	-96	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	256.025943901428	7	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAACTAAACTAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	107083651	107096172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086425_107088320_107088450_107088823_107088917_107093601_107093709_107095162
93281	chr15	+	2639	2	Genic_Genomic	ENSMUSG00000115318.2	novel	2906	1	NA	NA	0	4121	multi-exon	FALSE	canonical	3	15	junction_1	0	114	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATGC	NA	False	NA	NA	False	NA	NA	NA	33831593	33838620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_33831870_33836257
93282	chr2	+	4307	13	NNC	ENSMUSG00000026643.17	novel	1676	13	NA	NA	0	-28	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	101.506260069679	1	139	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATAAACTTTGGTTTTGT	1056	False	NA	NA	False	NA	NA	NA	3285317	3329886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_3285444_3305848_3305985_3306433_3306477_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315737_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
93283	chr11	-	5666	14	FSM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	42	-3752	16	3752	multi-exon	FALSE	canonical	3	937	junction_7	74.9654752883426	3591	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTGAGAGTTCATCATC	4531	False	NA	NA	False	NA	NA	NA	6217730	6205166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
93284	chr11	-	2727	5	Intergenic	novelGene_2544	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	77.1536616110992	140	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGTCTTGCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	121816171	121795182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121796051_121796101_121797657_121798775_121798837_121799014_121799142_121816055
93285	chr5	+	1063	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	-23	-1158	at_least_one_novel_splicesite	FALSE	canonical	1	27	junction_3	5552.23706916611	162	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTGAATCATCCCTTGC	452	False	NA	NA	False	NA	NA	NA	129097242	129100229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097975_129098056_129099066_129099255_129099438_129099610_129099837
93286	chr1	+	6392	27	NNC	ENSMUSG00000042207.18	novel	8714	27	NA	NA	227	1704	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	300.322807095196	516	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCACCACCGAGTTCCC	6978	False	NA	NA	False	NA	NA	NA	134488171	134560964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_134488277_134512891_134512970_134515659_134515783_134516514_134516686_134521066_134521202_134523537_134523635_134525320_134525435_134526797_134526957_134528371_134528492_134530187_134530347_134532179_134532362_134533450_134533614_134535425_134535546_134536602_134536798_134540925_134541108_134541624_134541750_134543655_134543807_134543926_134544042_134545429_134545786_134547297_134547437_134548580_134548761_134549672_134549832_134552448_134552935_134555002_134555115_134556335_134556491_134558170_134558492_134558974
93287	chr11	-	4959	30	NNC	ENSMUSG00000020422.15	novel	7897	31	NA	NA	439	-2547	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	22.7342607352245	11	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACAAGGCTGTCCCCAG	9735	False	NA	NA	False	NA	NA	NA	8614096	8384198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_8384639_8385822_8385915_8387103_8387273_8393934_8394015_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504_8429666_8442092_8443338_8468198_8468304_8469122_8469189_8469440_8469571_8480871_8480948_8481703_8481765_8482396_8482510_8488002_8488087_8491166_8491232_8495228_8495352_8497270_8497322_8498931_8499104_8499671_8499722_8529082_8529122_8550554_8550593_8565739_8565852_8614014
93288	chr16	-	6337	14	NNC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	13	12162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	51.6945970189027	344	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCCAGGCCGGACCTTC	NA	False	NA	NA	False	NA	NA	NA	44566709	44544968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_44545613_44547390_44547543_44549601_44549685_44549944_44550075_44550477_44550556_44551690_44552058_44552418_44552478_44554898_44555155_44556072_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565645_44565857_44566361
93289	chr9	+	987	6	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1907.89521724858	8	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTTATGGTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	119956853	119960621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959521_119960065_119960232_119960465
93290	chr9	-	1654	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	5	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4949.720940392	45	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTGTTGGTCAATGC	8141	False	NA	-39	True	NA	NA	NA	78387965	78385737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387190_78387231_78387431_78387522_78387703_78387792
93291	chr11	+	2921	10	NIC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	31	718	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	124.86091027051	12	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAACAATTGTACTGCCTT	8525	False	NA	NA	False	NA	NA	NA	74661686	74709438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74662092_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
93292	chr9	+	1923	9	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	31	-5	intron_retention	FALSE	non_canonical	0	0	junction_8	65.1685315163692	11	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174151	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108178873_108179045
93293	chr1	+	950	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-4	-48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8590.17096453848	16	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCGGAATTTTATTTTGC	NA	False	NA	NA	False	NA	NA	NA	86454443	86458386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686_86457929_86458150
93294	chr3	+	3268	13	ISM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	18	107	-16	1	intron_retention	FALSE	canonical	3	105	junction_1	23.8449854966056	335	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGCGTCATGGAGGGGAA	3305	False	NA	NA	False	NA	NA	NA	96604416	96613279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
93295	chr15	+	5523	14	Antisense	novelGene_ENSMUSG00000033228.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8895	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATCTCTCCTTGTGAAGG	NA	False	NA	NA	False	NA	NA	NA	96311559	96344446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96312796_96312910_96313033_96313609_96313831_96314731_96315071_96315952_96318724_96319822_96319934_96321397_96321500_96322450_96322555_96322706_96322765_96329660_96329729_96330206_96330308_96332802_96332879_96341825_96341982_96344388
93297	chr4	+	2785	4	NIC	ENSMUSG00000065999.14	novel	552	6	NA	NA	-40	-2	combination_of_known_splicesites	FALSE	canonical	3	26	junction_1	33.2498955721	649	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	147637693	147669653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_147637884_147661481_147661587_147665698_147665826_147667290
93298	chr4	+	4801	11	Fusion	ENSMUSG00000082082.2_ENSMUSG00000078502.11	novel	1575	3	NA	NA	-36445	-1	multi-exon	TRUE	non_canonical	0	0	junction_2	30.8681065178932	3	119	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145136864	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136997_145138756_145138851_145140606_145140719_145173288_145173342_145174456_145174578_145176036_145176816_145176900_145177335_145264372_145264571_145264739_145264966_145335557_145337358_145351058
93299	chr15	+	593	2	Genic_Genomic	ENSMUSG00000078300.4	novel	1002	1	NA	NA	-74	180	multi-exon	FALSE	non_canonical	0	0	junction_1	0	133	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	88	False	NA	NA	False	NA	NA	NA	12574900	12576156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_12575386_12576048
93300	chr7	-	5630	3	FSM	ENSMUSG00000048787.14	ENSMUST00000059851.14	5985	3	13	342	13	-342	multi-exon	FALSE	canonical	3	85	junction_2	16	156	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGTGAATTTATTCTG	NA	False	NA	NA	False	NA	NA	NA	119494955	119452360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_119457280_119458602_119459139_119494780
93301	chr5	+	10526	51	Intergenic	novelGene_814	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	374	89	12	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGGAGGCAGGACCGAAGC	1926	False	NA	NA	False	NA	NA	NA	110812243	110918583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110813940_110814404_110814482_110815331_110815481_110815928_110816056_110816414_110816612_110818740_110818962_110820973_110821162_110821274_110821489_110822728_110822836_110822908_110822955_110824315_110824613_110824724_110824805_110827829_110827886_110828006_110828145_110830664_110830845_110831007_110831244_110831711_110831868_110831953_110831996_110832393_110832533_110832941_110833027_110833217_110833376_110835662_110835808_110836057_110836169_110839483_110839681_110841030_110841202_110841284_110841488_110843137_110843404_110843817_110843914_110845074_110845176_110849548_110849655_110851315_110851484_110852746_110852938_110855798_110855934_110856030_110856204_110856637_110856810_110858895_110859037_110866953_110867127_110867294_110867490_110868601_110868710_110872287_110872377_110874754_110874818_110875397_110875442_110877096_110877175_110877681_110877830_110881584_110881773_110883218_110883516_110887164_110887547_110888046_110888156_110889835_110889927_110903262_110904632_110918356
93302	chrM	+	1235	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	381	-71	381	71	mono-exon	FALSE	NA	NA	NA	NA	NA	66	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	302	False	NA	19	True	NA	NA	NA	5708	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5700_6900
93303	chr7	-	5909	1	FSM	ENSMUSG00000097415.3	ENSMUST00000206358.2	3009	1	-2905	5	-2905	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	241	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATTGTGGTAGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	75424699	75418790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_75418800_75424700
93304	chr16	-	5905	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	-11	-4623	-11	0	multi-exon	FALSE	canonical	3	62	junction_4	107.072405408677	98	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGCCTCGGTTGATT	3232	False	NA	NA	False	NA	NA	NA	78373556	78337225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
93305	chr4	-	3974	7	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	70	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	517.136802231501	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135000055	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134941941_134942015_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
93306	chr11	-	2992	16	NNC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_5	215.994403219672	36	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	NA	False	NA	NA	NA	70860788	70833897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835806_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
93307	chr13	-	3007	5	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-21	172	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	58.7920062593547	28	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66589200	66577778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66580291_66581478_66581540_66581739_66581867_66587616_66587804_66589080
93308	chr11	-	2942	3	Intergenic	novelGene_2326	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	29	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57450923	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445857_57448115_57450421_57450507
93309	chr1	-	4441	28	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-21420	1577	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_15	200.718079901765	10	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCTCCAACAAAAACTTCC	NA	False	NA	NA	False	NA	NA	NA	84792692	84720871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738880_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543
93310	chrM	+	1969	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	435	-580	435	580	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	105	False	NA	-4	True	NA	NA	NA	12176	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12200_14100
93311	chr17	+	4576	3	NNC	ENSMUSG00000049672.16	novel	3743	3	NA	NA	-22	390	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.5	2	64	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTCAGGTAAAAATGTGG	NA	False	NA	NA	False	NA	NA	NA	69690022	69698584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_69690237_69692415_69692500_69694306
93312	chr3	+	4612	21	NNC	ENSMUSG00000054199.19	novel	7537	32	NA	NA	8112	3709	intron_retention	FALSE	non_canonical	0	0	junction_10	76.1185095755296	70	63	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCCACGAAACCCGCGAAA	NA	False	NA	NA	False	NA	NA	NA	88805853	88821119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88814890_88815295_88815915_88815993_88816097_88816544_88817547_88817620_88817726_88817932_88818116_88818187_88818321_88818592_88818750_88818844_88818977_88819066_88819423_88819543_88819607_88820008_88820094_88820177_88820236_88820876_88821008_88821090
93314	chr15	-	1921	15	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	421.460295416122	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCCGTGCAGTGCAGT	NA	False	NA	NA	False	NA	NA	NA	96953833	96894648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897547_96906262_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
93315	chr17	-	3598	4	Antisense	novelGene_ENSMUSG00000092458.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	68	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTTCTATCTTGTGAAAA	NA	False	NA	NA	False	NA	NA	NA	38181188	38125562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_38127876_38156022_38156639_38179913_38180418_38181023
93316	chr13	-	2499	8	Fusion	ENSMUSG00000114549.2_ENSMUSG00000114353.2	novel	1621	5	NA	NA	-14	353	intron_retention	FALSE	canonical	0	0	junction_5	58.1437346371131	52	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGTCTGAGATTCCTT	NA	False	NA	NA	False	NA	NA	NA	66950638	66830549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66841838_66841917_66942701_66942763_66942962_66943090_66950528
93317	chr7	+	4061	22	FSM	ENSMUSG00000030513.15	ENSMUST00000055576.12	4405	22	345	-1	-58	1	multi-exon	FALSE	canonical	3	127	junction_4	20.9878487682365	208	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGGCCAGTGGGTGAAA	NA	False	NA	NA	False	NA	NA	NA	65512121	65700135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_65512192_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65675313_65675353_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
93318	chr4	+	5314	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	36	1659	multi-exon	FALSE	non_canonical	0	0	junction_3	82.3413551347808	34	115	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTTCCAGGTTCCAGGT	NA	False	NA	NA	False	NA	NA	NA	147216530	147419850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147219028_147219122_147219591_147219699_147224494_147224577_147249797_147249844_147260303_147261171_147413405_147413566_147415724_147418022_147418146_147418681_147418838
93320	chr16	-	546	1	Intergenic	novelGene_3679	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212021	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
93321	chrX	+	6270	42	NNC	ENSMUSG00000079487.12	novel	6816	45	NA	NA	40	-135	intron_retention	TRUE	canonical	0	0	junction_41	25.5008369064003	9	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCCTGCCTGAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	100317675	100339538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337724_100339460
93322	chr4	+	6464	22	NNC	ENSMUSG00000028601.19	novel	1238	11	NA	NA	-13	38639	intron_retention	FALSE	non_canonical	0	0	junction_9	378.900096920959	135	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCGCCGACGTCGCGCCC	NA	False	NA	NA	False	NA	NA	NA	108022701	108075144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108039111_108040844_108040943_108041629_108041695_108044439_108044632_108046643_108046691_108046767_108046927_108049105_108049161_108049248_108049348_108051178_108051245_108053340_108053518_108058389_108058528_108061788_108062546_108067254_108067418_108075028
93323	chrX	+	14075	83	NNC	ENSMUSG00000025261.19	novel	14579	83	NA	NA	-1	-544	intron_retention	TRUE	canonical	3	45	junction_16	156.163102189427	678	71	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACTCTTCATAACTCAC	NA	False	NA	NA	False	NA	NA	NA	150586237	150717869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150586566_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475_150654653_150657528_150657775_150659290_150659425_150659808_150659904_150661713_150661906_150663495_150663713_150664073_150664197_150665487_150665726_150666074_150666306_150668577_150668701_150669078_150669175_150669739_150670010_150671379_150671533_150672664_150672793_150672985_150673068_150673725_150673903_150674012_150674173_150674735_150675095_150676818_150677015_150677916_150678085_150679558_150679705_150680182_150680250_150681439_150681658_150683896_150684109_150684494_150684678_150686824_150686998_150687349_150687499_150688351_150688428_150689260_150689360_150689946_150690081_150690271_150690441_150691723_150691953_150692404_150692584_150692855_150692946_150693096_150693252_150695204_150695251_150697141_150697430_150698587_150698844_150699036_150699168_150699821_150700037_150700114_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706558_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
93324	chr10	+	4349	3	FSM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	-7	-1219	-7	1206	multi-exon	FALSE	canonical	3	147	junction_1	1	192	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATCTTAAAAAATAAAGAC	NA	False	NA	NA	False	NA	NA	NA	121575834	121589989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_121576116_121581235_121581522_121586207
93325	chr14	-	1119	2	Antisense	novelGene_ENSMUSG00000045799.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGGGCACTGTAAAATAT	NA	False	NA	NA	False	NA	NA	NA	13670470	13669262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_13669689_13669777
93326	chr11	+	3150	10	Fusion	ENSMUSG00000036275.14_ENSMUSG00000020402.12	novel	951	10	NA	NA	-78	0	multi-exon	FALSE	canonical	3	6	junction_8	1336.7206140402	18	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATCTGCTTCTGTTAGT	5328	False	NA	NA	False	NA	NA	NA	52251883	52299550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52293872_52294385_52297771
93327	chr7	+	2528	8	NIC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	-2	0	intron_retention	FALSE	canonical	3	456	junction_1	90.2970155675599	683	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	633	False	NA	NA	False	NA	NA	NA	4743163	4750513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_4743239_4744778_4744981_4745120_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
93328	chr15	+	5278	8	NNC	ENSMUSG00000022412.15	novel	4097	8	NA	NA	4	0	intron_retention	FALSE	canonical	3	4	junction_1	100.193282596944	11	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACGTGTCTATGTGGT	2847	False	NA	NA	False	NA	NA	NA	80118312	80137572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80118383_80118634_80118760_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
93329	chr5	-	3141	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	311	479	-14	-479	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	16	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTGTATTCATGAATT	NA	False	NA	NA	False	NA	NA	NA	4154435	4131623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
93330	chr2	-	5893	35	Antisense	novelGene_ENSMUSG00000051329.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	100	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGACGGGACAAGGGCGGG	7946	False	NA	NA	False	NA	NA	NA	90566670	90509731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_90509852_90510114_90510226_90514263_90515537_90517634_90517715_90519447_90519563_90520408_90520568_90523394_90523473_90524173_90524274_90526983_90527069_90528203_90528271_90530457_90530542_90530754_90530926_90532354_90532456_90532723_90532891_90533402_90533529_90534152_90534316_90537266_90537401_90538476_90538547_90539165_90539327_90540376_90540445_90542286_90542386_90544115_90544236_90547935_90548032_90548155_90548251_90548340_90548438_90548529_90548636_90551531_90551694_90552372_90552435_90553680_90553790_90553953_90554080_90555945_90556046_90560020_90560163_90563122_90563249_90563447_90563554_90565756
93331	chr4	+	4224	8	FSM	ENSMUSG00000063524.14	ENSMUST00000080149.6	1902	8	-2333	11	-2333	-11	multi-exon	FALSE	canonical	3	2891	junction_5	3495.72395351573	23	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAGTCCACCAGTGTGC	NA	False	NA	NA	False	NA	NA	NA	150325609	150333319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
93332	chr13	-	1741	11	FSM	ENSMUSG00000069089.9	ENSMUST00000225990.2	1159	11	-28	-554	1	-125	multi-exon	FALSE	canonical	2	16	junction_6	227.413741889095	22	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATAGCTCATACTATTGC	NA	False	NA	NA	False	NA	NA	NA	100867436	100839263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
93333	chr13	+	7883	17	FSM	ENSMUSG00000021756.13	ENSMUST00000183663.8	8678	17	49	746	7	-746	multi-exon	FALSE	canonical	3	291	junction_16	42.4389267065038	303	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAAGCTGCTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	112600652	112645874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112624242_112624404_112625037_112625193_112627016_112627177_112630122_112630206_112631112_112631324_112631723_112631907_112633818_112633921_112634255_112634403_112635282_112635424_112637646_112637744_112639324_112639407_112640238
93334	chr3	-	7948	32	Fusion	ENSMUSG00000106218.2_ENSMUSG00000068922.15	novel	3891	3	NA	NA	2022	9775	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	31	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACCAGCGGAAGTAACGCA	NA	False	NA	NA	False	NA	NA	NA	88817359	88742556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_88743048_88744294_88744826_88753692_88753886_88761907_88762103_88762932_88763008_88763121_88763172_88763724_88763774_88764431_88764532_88765691_88765812_88766193_88766363_88770722_88770919_88776055_88776158_88777107_88777151_88787377_88787487_88794217_88794409_88794862_88794953_88796977_88797144_88798117_88798265_88799824_88799976_88801748_88801864_88802124_88803877_88805409_88805663_88806190_88806390_88807240_88807435_88808884_88809027_88810061_88810206_88810286_88810407_88812756_88812868_88814676_88814887_88815292_88815913_88815991_88816095_88816542
93335	chr11	-	6317	31	FSM	ENSMUSG00000020340.17	ENSMUST00000093166.11	6298	31	-24	5	-24	-5	multi-exon	FALSE	canonical	3	40	junction_25	27.300895386212	157	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACCAGCATCTTCGTCC	NA	False	NA	NA	False	NA	NA	NA	46203145	46084686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_46087295_46089817_46089966_46091472_46091712_46098213_46098309_46099114_46099188_46112162_46112294_46113436_46113528_46114888_46115033_46130830_46130919_46133113_46133314_46138385_46138506_46140556_46140666_46143430_46143508_46144773_46144871_46145336_46145494_46148375_46148530_46151626_46151775_46152263_46152431_46156730_46156857_46157536_46157657_46161378_46161497_46163435_46163528_46165464_46165570_46167605_46167735_46168885_46168983_46170778_46170961_46174983_46175086_46176893_46176972_46180458_46180549_46182339_46182480_46203053
93336	chr2	+	1684	8	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	44814	2	4470	-2	3prime_fragment	FALSE	canonical	3	555	junction_6	78.103803246914	40	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCTGTATATTAAGATTT	NA	False	NA	NA	False	NA	NA	NA	90552372	90566670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
93337	chr4	+	2871	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.272084638539	187	31	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147533648	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147592042_147592098_147595209_147595337_147596801_147597189_147597943_147598341_147598588_147598935_147599102
93340	chr10	+	7009	21	NIC	ENSMUSG00000019943.11	novel	1404	6	NA	NA	269	-20	combination_of_known_junctions	FALSE	canonical	3	221	junction_9	23.8756675299352	329	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTTATCTGTTTCTGAA	NA	False	NA	NA	False	NA	NA	NA	98750536	98861985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
93341	chr6	-	472	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	89	9	0	-3	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	67	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCATGGTTGGCGTGGTCTG	NA	False	NA	NA	False	NA	NA	NA	72935382	72934338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72934636_72934895_72935008_72935319
93343	chrM	-	1013	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGCTCTGCCACCCTA	9986	False	NA	-1	True	NA	NA	NA	3710	2697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
93344	chr4	+	3003	3	Antisense	novelGene_ENSMUSG00000045699.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	110	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACTCTACCCAGAGAAAC	NA	False	NA	NA	False	NA	NA	NA	146921737	146985691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_146924504_146978449_146978582_146985586
93346	chr17	-	661	1	FSM	ENSMUSG00000068120.5	ENSMUST00000181584.2	441	1	-54	-166	-54	166	mono-exon	FALSE	NA	NA	NA	NA	NA	25	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCACCATCCTGGGCCTG	NA	False	NA	NA	False	NA	NA	NA	5866969	5866308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_5866300_5867000
93347	chr7	+	4886	6	Fusion	ENSMUSG00000064194.11_ENSMUSG00000074887.5	novel	810	3	NA	NA	9	14144	intron_retention	FALSE	canonical	0	0	junction_1	113.272415000299	107	56	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCACGCCTGTGTGCATTT	NA	False	NA	NA	False	NA	NA	NA	42827020	42890410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_42827128_42870282_42873126_42873324_42873386_42875135_42876337_42884603_42884794_42889926
93348	chr14	+	6488	19	NNC	ENSMUSG00000016831.13	novel	5350	10	NA	NA	4	8694	intron_retention	FALSE	non_canonical	0	0	junction_10	266.927678974042	467	35	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGATAGAGCCAAGATGAAAA	NA	False	NA	NA	False	NA	NA	NA	52516606	52542552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52516690_52516844_52517114_52517277_52517347_52523116_52523360_52524185_52524447_52524757_52524989_52528217_52528299_52528931_52529676_52529976_52530141_52530657_52530763_52530858_52533648_52533977_52534037_52534118_52534230_52534375_52534414_52534926_52535125_52535330_52535543_52537157_52537563_52537640_52537859_52542344
93349	chr2	+	1469	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	72	0	6	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	17587	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8619	False	NA	NA	False	NA	NA	NA	61542109	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
93350	chr15	-	5180	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9799	False	NA	NA	False	NA	NA	NA	22705091	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
93351	chr13	-	5159	1	Intergenic	novelGene_1440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	121	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAAGACTGCCCCAACAA	NA	False	NA	NA	False	NA	NA	NA	66648544	66643385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66643400_66648500
93352	chr12	-	2484	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	86	-3	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	27.9026084005699	2	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAACACCTGCAGATTCTT	NA	False	NA	NA	False	NA	NA	NA	4284208	4263484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281445_4281683_4283530_4283658_4283781
93353	chr9	-	2443	4	Intergenic	novelGene_984	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	1.4142135623731	1	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAGAACGGTTTCCGTG	125	False	NA	NA	False	NA	NA	NA	5555512	5460299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_5460636_5548977_5550160_5550221_5550972_5555337
93354	chr2	+	4938	5	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	-7	1016	intron_retention	TRUE	non_canonical	0	0	junction_3	38.9358446678636	1299	132	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCTCTGAACCTGTAAGC	NA	False	NA	NA	False	NA	NA	NA	177156518	177170938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177156642_177165078_177165206_177165410_177166891_177167562_177167926_177168093
93355	chr16	+	4819	4	ISM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	-4	1473	3	-1308	5prime_fragment	FALSE	canonical	3	112	junction_3	8.80656320908194	204	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTAGTTTCCATGTG	NA	False	NA	NA	False	NA	NA	NA	97798529	97815842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318
93357	chr5	-	4284	10	NIC	ENSMUSG00000029246.15	novel	3981	11	NA	NA	-42	108	intron_retention	FALSE	canonical	3	550	junction_5	49.1854640777457	5	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTAGGAGGGCGGTAGAG	NA	False	NA	NA	False	NA	NA	NA	77099054	77060987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
93358	chr5	+	2554	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	104	447	3	-447	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	6	115	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTCACTCAGATGGGGC	8136	False	NA	NA	False	NA	NA	NA	145051128	145066062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
93359	chr3	+	3322	13	ISM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	-2	0	-2	0	intron_retention	FALSE	canonical	3	88	junction_1	28.0132657067247	254	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2586	False	NA	NA	False	NA	NA	NA	96603697	96613278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
93360	chr9	+	7369	9	FSM	ENSMUSG00000037674.16	ENSMUST00000163401.9	7880	9	504	7	9	-7	multi-exon	FALSE	canonical	3	93	junction_7	49.9699909945959	224	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACTGACTGGATGTTAAGA	1181	False	NA	NA	False	NA	NA	NA	72440025	72530104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902_72519111_72522318_72522615_72523918
93361	chr4	+	3305	5	NNC	ENSMUSG00000001333.10	novel	2042	5	NA	NA	5974	1957	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4.14578098794425	12	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAAAGAATTTCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	129187397	129204309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129188170_129200134_129200260_129200420_129200498_129201834_129203664_129203807
93362	chr13	-	1679	7	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	912	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3164.28533268836	8	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTTATGACGTGTGCC	6914	False	NA	NA	False	NA	NA	NA	58548167	58539056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542141_58547750_58547805_58548146
93363	chr4	+	2846	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	1	337	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	97	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTTACATATGGTGATT	NA	False	NA	NA	False	NA	NA	NA	147216495	147669992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147534439_147534577_147578832_147578927_147639766_147639810_147665698_147665826_147667290_147667431_147667838
93364	chr11	-	3074	13	ISM	ENSMUSG00000038909.17	ENSMUST00000092766.12	3414	15	6418	1	6329	-1	3prime_fragment	FALSE	canonical	3	566	junction_10	135.419384588109	3	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGACTGCTCTGAAGC	NA	False	NA	NA	False	NA	NA	NA	95194010	95165085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958
93365	chr1	-	6791	23	FSM	ENSMUSG00000026425.16	ENSMUST00000097588.9	8026	23	-52	1287	-47	-1287	multi-exon	FALSE	canonical	3	89	junction_2	12.3013135091171	308	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCCAAAGCACAACTT	NA	False	NA	NA	False	NA	NA	NA	131455137	131214275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_131217479_131220258_131220584_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
93366	chr3	+	2130	11	NNC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	-54	-32	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	138.424166965165	717	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATGACTGTGTCAGACT	4427	False	NA	NA	False	NA	NA	NA	95222503	95230878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_95222657_95227372_95227547_95227897_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
93367	chr4	+	9635	5	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	2798	4	NA	NA	1	326	intron_retention	FALSE	non_canonical	0	0	junction_2	74.4781847254617	656	88	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146033868	146135651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034017_146054375_146057865_146057933_146061192_146132828_146135101_146135183
93368	chr5	+	6424	16	Antisense	novelGene_ENSMUSG00000106706.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	192	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGAGTAGCCGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	66456079	66752387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_66460053_66464877_66465060_66466422_66466543_66468348_66468427_66469501_66469590_66470657_66470772_66520059_66520188_66522315_66522464_66548969_66549031_66549114_66549200_66557417_66557625_66608810_66609627_66619440_66619510_66649400_66649518_66700806_66700957_66752299
93369	chr19	-	3481	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3	1	112	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTTGCAACAAGACCGT	NA	False	NA	NA	False	NA	NA	NA	22705257	22699849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22703331_22705043
93371	chr3	+	2572	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-9	-350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	429.410117357392	53	18	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGATTTTTAACTTTC	4840	False	NA	NA	False	NA	NA	NA	34074237	34124121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095312_34100223_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116050_34116181_34118267_34118469_34123065
93372	chr12	-	7270	22	NNC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-33078	-2	intron_retention	TRUE	non_canonical	0	0	junction_7	88.3526483824366	1	127	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATCTGAAATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	55159973	55092462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_55092729_55095671_55095763_55100085_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765_55127521_55135953_55136063_55136918_55137013_55138033_55138117_55142597_55142703_55143891_55143959_55144038_55144097_55146695_55146849_55148124_55148274_55148607_55148708_55149251_55149339_55151974_55152049_55152400_55152507_55155404_55155456_55157868_55157966_55159583
93373	chr12	+	6146	21	NIC	ENSMUSG00000020594.15	novel	6226	21	NA	NA	-23	-25	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	41.6952035610812	378	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTCTTGTGTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	8724712	8802532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_8724834_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
93374	chr18	-	4868	4	FSM	ENSMUSG00000056153.16	ENSMUST00000125362.8	2814	4	45	-2099	3	-1227	multi-exon	FALSE	canonical	3	64	junction_2	64.5652125115891	197	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACTATATAACTATAAGGC	NA	False	NA	NA	False	NA	NA	NA	88912431	88884519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_88889043_88905115_88905190_88905332_88905458_88912285
93375	chr4	+	5050	8	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	46	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	209.493753255464	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTTGGTGTCTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	132857985	132927066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132916452_132916507_132917439_132917571_132919415_132919572_132921706_132922007_132922074_132922219_132923027
93376	chr13	-	10825	4	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	100	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGATAAACCCGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	23514183	23355353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23361359_23508976_23510673_23510750_23513672_23513980
93377	chr11	-	3671	24	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1103.27947810394	3	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAATGGCGTGATGCTCT	NA	False	NA	NA	False	NA	NA	NA	100418695	100367187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_100368165_100368840_100368914_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100414386_100414448_100418620
93378	chr4	-	1685	2	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	57118	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	134943007	134941279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134941990_134942032
93379	chr17	-	399	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4988	6	1453	-6	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45879209	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
93380	chr14	-	3065	5	ISM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	-6	5139	-3	1332	5prime_fragment	FALSE	canonical	3	157	junction_4	1636.32392881116	9	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAATTGGACCTCTGAC	8743	False	NA	NA	False	NA	NA	NA	52341467	52317397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
93381	chrX	-	626	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	18	7	-17	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCATAGTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151693133	151692507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693100
93382	chr4	-	2506	4	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	99	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAGCGGAGAAACAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	145178235	145159025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159145_145173061_145173196_145173287_145173339_145176033
93383	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	151	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
93384	chr18	+	4495	3	NIC	ENSMUSG00000024283.16	novel	5208	14	NA	NA	9582	0	intron_retention	FALSE	canonical	3	573	junction_2	2	9	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGCAGTTATTTCAGAAT	4078	False	NA	NA	False	NA	NA	NA	7920200	7929028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_7921609_7921855_7921984_7926069
93386	chrM	+	1886	2	Genic_Genomic	ENSMUSG00000064367.1	novel	1824	1	NA	NA	437	569	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAACACCTAATGACAAACA	107	False	NA	-2	True	NA	NA	NA	12178	14134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14026_14095
93387	chr2	+	3253	9	Fusion	ENSMUSG00000059005.14_ENSMUSG00000093242.4	novel	1074	10	NA	NA	1	-3	intron_retention	FALSE	canonical	0	0	junction_2	3668.02152903987	2	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCTGTTTGGTTTTTGTG	7495	False	NA	NA	False	NA	NA	NA	75489624	75496462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_75489668_75491809_75491930_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75495495_75495577
93388	chr2	+	5056	23	FSM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	-97	-1416	-46	0	multi-exon	FALSE	canonical	3	88	junction_1	48.8940497317777	2	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCTCTGTGCCCTGCCT	4596	False	NA	NA	False	NA	NA	NA	18069400	18217197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944_18131041_18151587_18151684_18164266_18164523_18167127_18167698_18175064_18175110_18175853_18175887_18191028_18191208_18201393_18201512_18202735_18202809_18208411_18208567_18210811_18211001_18211361_18211451_18211590_18211956_18212593_18212691_18213560_18213759_18215578
93389	chr9	-	1667	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4690.5121168554	19	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTGTTGGTCAATGC	7153	False	NA	NA	False	NA	NA	NA	78388953	78385737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386408_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
93390	chr9	+	1734	10	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	61.6044731420626	7	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174086	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108178854_108179178
93391	chr12	-	7339	7	Antisense	novelGene_ENSMUSG00000020661.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	30	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGAGCCCCGGCCCGA	8440	False	NA	NA	False	NA	NA	NA	3964433	3941823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_3941860_3945541_3945676_3952748_3952813_3954137_3954224_3955590_3955661_3956762_3956882_3957603
93392	chr11	+	2018	18	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_11	247.898824098904	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	NA	False	NA	NA	NA	115455308	115474732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
93393	chr9	+	1785	9	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	216	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	65.1685315163692	1	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174336	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108178647_108178772
93394	chr9	+	2435	11	NNC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	-1	2	intron_retention	FALSE	canonical	0	0	junction_10	205.802915431245	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCTTTTATAGTTTG	9121	False	NA	NA	False	NA	NA	NA	15217558	15228268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15227239_15227403
93395	chr8	-	4797	1	Antisense	novelGene_ENSMUSG00000095403.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGTTAAGAGCACTGACT	NA	False	NA	NA	False	NA	NA	NA	21123093	21118296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_21118300_21123100
93396	chr14	+	6983	19	NNC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	67.5040922399213	2	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCGTGTCCTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21531514	21722201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21531622_21542100_21542221_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398_21720654_21720698
93397	chr4	-	1134	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	59	-191	59	191	mono-exon	FALSE	NA	NA	NA	NA	NA	106	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740847	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91740800
93398	chr4	+	2564	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-20	2581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	127.689401805057	226	24	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576853	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597216_147597970_147598436_147599020_147599868_147600023
93399	chr9	+	4063	3	ISM	ENSMUSG00000025236.12	ENSMUST00000214361.2	5148	6	19150	7	-915	-3	3prime_fragment	FALSE	canonical	3	314	junction_2	158	251	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGGATCCTAAGTCTAAT	NA	False	NA	NA	False	NA	NA	NA	59218015	59223476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59220520_59221035_59221135_59222016
93400	chr8	+	6186	2	ISM	ENSMUSG00000071793.13	ENSMUST00000139264.2	948	5	5145	219	5145	-219	intron_retention	FALSE	canonical	3	1486	junction_1	0	19	215	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGAAGTCTTACAGCTG	NA	False	NA	NA	False	NA	NA	NA	20035859	20045669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_20036160_20039783
93401	chr13	-	2384	5	Genic_Genomic	ENSMUSG00000091347.3	novel	255	1	NA	NA	-16522	1486	multi-exon	TRUE	canonical	0	0	junction_1	42.4403993854912	14	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGACTTAGCTCCATT	9965	False	NA	NA	False	NA	NA	NA	66391909	66373646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66375028_66375278_66375998_66384209_66384271_66384471_66384599_66391813
93402	chr9	+	4422	15	NIC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	19	465	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	33.0834597060593	2	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATCTTTTTTTAAAAAAA	4722	False	NA	NA	False	NA	NA	NA	69305257	69340869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_69305336_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
93403	chr11	+	1166	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	0	-172	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
93404	chr11	+	3943	30	Antisense	novelGene_ENSMUSG00000081078.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	31	108	13	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGTTCCTCCAGCAGGTC	202	False	NA	NA	False	NA	NA	NA	46086893	46182394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_46087295_46089817_46089965_46091471_46091717_46098218_46098309_46099114_46099191_46112165_46112293_46113435_46113535_46114892_46115033_46130830_46130919_46133113_46133312_46138380_46138506_46140556_46140666_46143430_46143511_46144775_46144871_46145337_46145494_46148375_46148524_46151621_46151775_46152263_46152434_46156732_46156854_46157527_46157654_46161375_46161494_46163432_46163529_46165466_46165568_46167603_46167739_46168886_46168983_46170778_46170959_46174983_46175088_46176895_46176973_46180461_46180551_46182341
93405	chr2	+	8346	34	NNC	ENSMUSG00000036202.17	novel	2789	14	NA	NA	-1271	-35	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	177.876444153678	7	51	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAGGATATATAATTAAAC	NA	False	NA	NA	False	NA	NA	NA	51961572	52012358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51961660_51963148_51963266_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
93406	chr2	+	4556	24	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	-19	-126	intron_retention	FALSE	canonical	0	0	junction_20	185.381138068593	83	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGTCTTCAGGACAGG	NA	False	NA	NA	False	NA	NA	NA	166748011	166788183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783347_166783413_166783934_166784017_166784979_166785127_166786296
93408	chr2	+	773	2	Antisense	novelGene_ENSMUSG00000060703.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	0	104	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTGTGTTCTATTCGTG	NA	False	NA	NA	False	NA	NA	NA	60098114	60099285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_60098215_60098612
93409	chr19	-	3177	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	5	6	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22705271	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773_22700850_22702894
93410	chr10	+	2499	5	NNC	ENSMUSG00000061371.8	novel	2360	4	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	16.2018517460196	91	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	81883954	81900575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350_81897000_81900022
93412	chr9	+	2858	5	ISM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	297	6	2	-5	intron_retention	FALSE	canonical	3	3928	junction_3	5772.60173145524	99	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCATACAGTTGTCCTGA	2464	False	NA	NA	False	NA	NA	NA	40712576	40716490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269
93413	chr2	+	5119	37	NNC	ENSMUSG00000051329.14	novel	5684	37	NA	NA	2188	173	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_36	112.76240658795	2	39	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCCTTGAAGCTTTCTA	NA	False	NA	NA	False	NA	NA	NA	90509746	90566845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758_90565941_90566033
93415	chr2	+	3007	5	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	2	3237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.0746772020624	1	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATTAAATGCCTCATGT	NA	False	NA	NA	False	NA	NA	NA	150023676	150038436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775_150035095_150037050
93418	chr12	-	4895	19	Antisense	novelGene_ENSMUSG00000048118.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	22	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGATGATCCCTGCTGACT	NA	False	NA	NA	False	NA	NA	NA	71145645	71083773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_71083962_71084042_71084140_71086612_71086745_71091796_71091878_71092887_71092962_71093964_71094132_71106833_71106914_71108059_71108151_71108304_71108403_71109866_71110099_71113849_71114111_71116602_71116804_71118579_71118663_71119359_71119503_71121706_71122843_71123215_71123320_71133226_71133436_71134234_71134380_71144272
93419	chr11	+	2638	2	NNC	ENSMUSG00000000275.17	novel	5566	8	NA	NA	18230	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	14	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCGACATTGTCCTGCCT	2500	False	NA	NA	False	NA	NA	NA	88908431	88911115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88910662_88910707
93420	chr14	+	1430	2	FSM	ENSMUSG00000012405.17	ENSMUST00000224196.2	565	2	-864	-1	-13	1	multi-exon	FALSE	canonical	3	16172	junction_1	0	100	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTTCTGCTTAAAGGTG	NA	False	NA	NA	False	NA	NA	NA	4198712	4200732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4199790_4200379
93421	chr6	-	1044	7	NNC	ENSMUSG00000029752.13	novel	2016	12	NA	NA	2704	-25	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	3203.96450597624	6	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAAAAGTTTCACATC	5303	False	NA	NA	False	NA	NA	NA	7689518	7675193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675265_7680159_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251
93422	chr5	+	1015	2	Genic_Genomic	ENSMUSG00000096617.4	novel	1002	1	NA	NA	-69	175	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CCCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96009503	96010749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_96009940_96010170
93423	chr7	+	3892	17	NNC	ENSMUSG00000070699.6	novel	1868	16	NA	NA	-2350	1209	intron_retention	FALSE	non_canonical	0	0	junction_1	89.056315574753	23	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCATAAAACTTTCTTTAAA	1600	False	NA	NA	False	NA	NA	NA	28439066	28454505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28439664_28440910_28440982_28441231_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
93424	chr5	-	3195	11	ISM	ENSMUSG00000029598.13	ENSMUST00000031597.7	4208	12	4586	623	4562	-623	3prime_fragment	FALSE	canonical	3	256	junction_2	57.4951302285681	217	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTACAATGGAAAAGTGC	NA	False	NA	NA	False	NA	NA	NA	120637104	120621969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_120623904_120624104_120624268_120624712_120624866_120625494_120625567_120625736_120625833_120626474_120626636_120629190_120629289_120630729_120630945_120631116_120631218_120632442_120632602_120637061
93425	chr9	+	7008	10	FSM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	157	-2218	0	2218	multi-exon	FALSE	canonical	3	33	junction_7	7.87400787401181	189	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGTAGTAGTAGTATTTTA	NA	False	NA	NA	False	NA	NA	NA	37525122	37563169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047_37556244_37557592
93426	chrM	+	952	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	192	0	-192	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAATCACACAAATTTTG	-2	True	NA	87	True	NA	NA	NA	14144	15096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15100
93427	chr11	+	2765	13	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	1	148	intron_retention	FALSE	canonical	1	4	junction_4	66.3075221977115	4	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATAAATAATTCTTTTAA	NA	False	NA	NA	False	NA	NA	NA	29476450	29495427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
93428	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
93429	chr4	+	2670	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.443251190051	45	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	924	False	NA	NA	False	NA	NA	NA	145237358	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237383_145245504_145245556_145257381_145257486_145261385_145261513_145263160
93430	chr17	-	1764	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	638	1677	mono-exon	FALSE	NA	NA	NA	NA	NA	46	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCGTGCGTACTTAGACAT	NA	False	NA	NA	False	NA	NA	NA	40159080	40157316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157300_40159100
93431	chr12	+	3489	7	NNC	ENSMUSG00000021096.12	novel	1103	3	NA	NA	-23140	969	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	166.72707238678	184	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATAGAGTTGGGAGTAT	NA	False	NA	NA	False	NA	NA	NA	72781088	72842307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_72781169_72782330_72782779_72830456_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
93433	chr7	-	977	4	NIC	ENSMUSG00000030960.17	novel	563	5	NA	NA	8	206	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	160.751015203292	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACACTTATTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	132454100	132428979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_132429612_132452319_132452439_132453154_132453221_132453940
93434	SIRV6	+	1170	8	NNC	SIRV6A	novel	1528	10	NA	NA	170	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8227.40540597616	1	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1473	11825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1535_1640_1703_2510_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
93435	chr9	-	6428	48	NNC	ENSMUSG00000032198.10	novel	6880	50	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	49.6898757122857	263	50	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	6275	False	NA	NA	False	NA	NA	NA	21763912	21711475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21711696_21712466_21712629_21712817_21712925_21713020_21713165_21713648_21713886_21714109_21714200_21714288_21714422_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21737078_21737172_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
93436	chr15	+	1874	9	NIC	ENSMUSG00000009585.19	novel	1953	9	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_6	228.012609300451	1	81	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	8286	False	NA	NA	False	NA	NA	NA	79776643	79792119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790580_79790804_79791051_79791165_79791504
93437	chr13	-	2853	1	Intergenic	novelGene_1463	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	124	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTAAGAGCTGTGTACCA	NA	False	NA	NA	False	NA	NA	NA	68592965	68590112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_68590100_68593000
93438	chr11	-	3468	18	NNC	ENSMUSG00000061306.17	novel	4578	17	NA	NA	20	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	231.755389481309	3	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGAAGGCTGATTATGAA	5083	False	NA	NA	False	NA	NA	NA	120042085	119995321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119995386_119995873_119996860_119997255_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
93439	chr1	-	900	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	257	6	-3	5	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	2311	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAATGTGTCGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	16174629	16171524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
93440	chr1	-	3187	4	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	8	-18	intron_retention	FALSE	canonical	3	18	junction_3	687.459736194702	2	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAAAAATATATCTCACG	2346	False	NA	NA	False	NA	NA	NA	93729620	93720315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93728633_93729512
93441	chr5	+	8409	13	Fusion	ENSMUSG00000042719.18_ENSMUSG00000029452.19	novel	2910	24	NA	NA	-11996	8096	multi-exon	FALSE	non_canonical	0	0	junction_10	197.382507245872	3	77	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGGCCGCCTCCGGGGTGG	NA	False	NA	NA	False	NA	NA	NA	121565484	121590537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_+_121567525_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890_121581171_121582037_121583638_121585205_121585341_121590251
93442	chr7	+	5240	25	FSM	ENSMUSG00000039990.17	ENSMUST00000051169.13	5424	25	150	34	0	-34	multi-exon	FALSE	canonical	3	128	junction_10	22.9037463577953	152	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTCTGCAGGAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	133239421	133274666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133248718_133248821_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
93443	chr1	-	3136	6	NNC	ENSMUSG00000022995.17	novel	556	5	NA	NA	132	1839	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	162.370440659623	3	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTTAAATGTAGCAGT	NA	False	NA	NA	False	NA	NA	NA	181744793	181730125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181731957_181732391_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763
93444	chr19	-	3798	3	NNC	ENSMUSG00000025077.15	novel	4109	10	NA	NA	9	-3168	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	81	7	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGAAATCCAAGGACTACAG	7983	False	NA	NA	False	NA	NA	NA	56536666	56531610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_56534079_56535068_56536136_56536403
93445	chr2	-	4496	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	19	1	19	-1	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	19	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	175017645	175008048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
93446	chr19	+	6612	24	Antisense	novelGene_ENSMUSG00000024943.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	113	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCGTCCCGCAGCGGCTT	NA	False	NA	NA	False	NA	NA	NA	23186106	23251192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_23186335_23187616_23187707_23187784_23187967_23191113_23191233_23191427_23191533_23192002_23192104_23192517_23195895_23205537_23205661_23206278_23206405_23208923_23209091_23209181_23209359_23211327_23211460_23213237_23213332_23216247_23216363_23219999_23220153_23221216_23221475_23232040_23232113_23234851_23235013_23237009_23237151_23238693_23238830_23240965_23241129_23243027_23243081_23246088_23246233_23250997
93447	chr17	+	3452	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	569.858723583091	668	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	503	False	NA	NA	False	NA	NA	NA	56610403	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627212_56627283_56627396_56627543_56629020_56629126_56629355
93448	chr4	+	2974	7	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	196.482399551037	95	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATCCTTAAAAGAGTATC	924	False	NA	NA	False	NA	NA	NA	145237358	145265522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237418_145237495_145237589_145239496_145239670_145245499_145245556_145257381_145257486_145261385_145261513_145263160
93449	chr16	+	5251	19	Fusion	ENSMUSG00000022516.11_ENSMUSG00000022517.18	novel	2519	17	NA	NA	-5	2	intron_retention	TRUE	canonical	3	83	junction_12	122.766062789516	1607	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTTCTGAGTGCCATG	2919	False	NA	NA	False	NA	NA	NA	4704107	4758885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759_4757158_4757241_4757503_4758059
93450	chr11	-	1122	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	69	-189	69	189	mono-exon	FALSE	NA	NA	NA	NA	NA	25	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGCCTT	4530	False	NA	NA	False	NA	NA	NA	20285944	20284822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20285900
93451	chr9	+	5736	24	NIC	ENSMUSG00000040325.17	novel	4945	23	NA	NA	0	-11	combination_of_known_junctions	FALSE	canonical	3	304	junction_23	40.0622389135641	246	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTATGGCCTTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	106699072	106758180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132
93452	chr17	-	3742	7	Antisense	novelGene_ENSMUSG00000061544.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAATCTCTGAGGAGAGCC	816	False	NA	NA	False	NA	NA	NA	21966982	21949764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_21950031_21952773_21952936_21955034_21955107_21958419_21958491_21961343_21961457_21962835_21962937_21964025
93453	chr9	+	3350	2	NNC	ENSMUSG00000033491.14	novel	3211	3	NA	NA	594	-4	intron_retention	FALSE	canonical	1	3	junction_1	0	1	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATCACTTACTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	86626295	86640492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_86626364_86637210
93455	chr10	+	5127	1	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	158	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGAATTCTAGGATAGCC	NA	False	NA	NA	False	NA	NA	NA	62640356	62645483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62640400_62645500
93456	chr18	-	9449	53	Fusion	ENSMUSG00000024370.18_ENSMUSG00000003778.15	novel	4468	22	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_18	437.625233132821	28	115	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAAAACTCTGGCCTTT	NA	False	NA	NA	False	NA	NA	NA	34784775	34732887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738732_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34743462_34743682_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749713_34749788_34756507_34756605_34757590_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767566_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
93457	chr8	-	3267	21	Intergenic	novelGene_1746	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTATACTCACCCGCCACAA	NA	False	NA	NA	False	NA	NA	NA	111782198	111760551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760575_111763538_111763704_111766761_111766951_111767226_111767374_111768108_111768299_111768869_111769016_111769288_111769439_111769862_111769971_111770270_111770424_111771507_111771639_111772215_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
93458	chr10	-	3473	20	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	390	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	147.362029936602	16	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175931	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105169_62105274_62105546_62105605_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
93459	chr3	+	1990	10	NIC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	0	-12	combination_of_known_splicesites	FALSE	canonical	2	4	junction_5	140.435917462664	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAGACTTGAGAAAGGGT	4481	False	NA	NA	False	NA	NA	NA	95222557	95230898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
93460	chr8	-	3932	18	Genic_Genomic	ENSMUSG00000086134.2	novel	947	5	NA	NA	-18994	455	multi-exon	TRUE	non_canonical	0	0	junction_1	0	185	11	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAACACAAGCCCGGGCAC	NA	False	NA	NA	False	NA	NA	NA	26065093	26038221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_26038485_26039109_26039239_26045523_26045789_26047744_26047837_26048084_26048258_26050733_26050858_26052151_26052343_26054353_26054499_26056724_26056929_26058201_26058348_26059649_26059777_26060156_26060267_26060724_26060915_26062351_26062477_26062734_26062806_26063138_26063281_26063565_26063666_26063758
93461	chr4	+	4071	5	NNC	ENSMUSG00000028527.19	novel	4186	6	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.781050254203	430	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATGTGATGGAATTTCAT	NA	False	NA	NA	False	NA	NA	NA	101276925	101324190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_101277144_101304356_101304477_101317696_101317870_101320145_101320265_101320749
93462	chr4	+	1216	6	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-13	3476	multi-exon	FALSE	canonical	0	0	junction_2	176.343528375725	2	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311759	145434487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145314001_145314095_145399301_145399395_145422720_145422806_145425813_145425941_145433992
93463	chrX	-	3585	1	Intergenic	novelGene_4021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	78	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAATTTGCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116230152	116226567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116226600_116230200
93464	chr15	-	3328	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	86	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAACAAGACCGTTTTCT	9804	False	NA	NA	False	NA	NA	NA	22705086	22699827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700787_22702717
93465	chr12	+	2768	5	Intergenic	novelGene_4303	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	43.3265219005634	121	12	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	19116396	19127637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_19116514_19123371_19123499_19123700_19123762_19125090_19126671_19126754
93466	chr17	-	2514	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	2	4	2	-4	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	28	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTCCTGCTCTCCTTG	NA	False	NA	NA	False	NA	NA	NA	45884195	45878704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
93467	chr14	-	3606	15	ISM	ENSMUSG00000025278.10	ENSMUST00000052678.9	9100	46	106231	0	39447	0	3prime_fragment	TRUE	canonical	3	472	junction_14	48.3642640884396	28	33	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGTCATTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	14545585	14518184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459
93468	chr15	-	3287	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	80	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCAGGCCCCAAAGCTCAGG	9799	False	NA	NA	False	NA	NA	NA	22705091	22700911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22702356_22703248
93469	chr3	+	1571	12	Antisense	novelGene_ENSMUSG00000002227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGGGTTTGACTCCAG	NA	False	NA	NA	False	NA	NA	NA	104702398	104708114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702556_104702639_104702765_104703011_104703099_104703175_104703300_104704077_104704156_104704283_104704477_104704589_104704713_104706713_104706924_104707012_104707110_104707259_104707366_104707590_104707748_104708000
93470	chrX	-	2401	4	NNC	ENSMUSG00000086711.2	novel	4529	2	NA	NA	115	58700	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2.05480466765633	38	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGAAATGGTAGCGACAGG	NA	False	NA	NA	False	NA	NA	NA	52976852	52912703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_52914171_52916160_52916598_52975320_52975490_52976524
93471	chr13	+	3125	6	NNC	ENSMUSG00000113870.2	novel	327	2	NA	NA	-9748	680	intron_retention	FALSE	non_canonical	0	0	junction_4	56.749977973564	2	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGCCTTTGTCCTGTGTT	NA	False	NA	NA	False	NA	NA	NA	65787623	65798843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_65787705_65794023_65794151_65794350_65794412_65795586_65795838_65796173_65796501_65796565
93472	chr5	+	1108	1	Antisense	novelGene_ENSMUSG00000042121.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCTGGCCTCCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	114079745	114080853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_114079700_114080900
93473	chr15	+	7860	6	FSM	ENSMUSG00000001280.14	ENSMUST00000001326.7	7754	6	-122	16	-75	-16	multi-exon	FALSE	canonical	3	93	junction_1	20.1295802241378	345	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTCTCTGGTGTATTGA	NA	False	NA	NA	False	NA	NA	NA	102314692	102344823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_102314858_102316206_102316368_102316650_102318155_102334065_102334232_102338391_102338592_102339159
93474	chr3	+	4424	9	NIC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	0	161	intron_retention	FALSE	canonical	3	18	junction_3	858.885242261735	7	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTTTATTTATGACAAA	NA	False	NA	NA	False	NA	NA	NA	79498671	79511118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_79498865_79500916_79501058_79502508_79502616_79503398_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
93475	chr8	+	3097	13	NNC	ENSMUSG00000031808.8	novel	2795	14	NA	NA	-227	448	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	50.9026849324604	8	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGACACATCCCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	72023071	72040394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545_72039379_72040207
93476	chr1	-	1623	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-841	1	-841	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	61	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTCCCTTAGTATAATTA	NA	False	NA	NA	False	NA	NA	NA	24653893	24652270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
93477	chr10	+	366	3	Antisense	novelGene_ENSMUSG00000025362.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	145	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGCCCTTTTTGGCGCGAC	658	False	NA	NA	False	NA	NA	NA	128460406	128462067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128460505_128461074_128461207_128461931
93479	chr17	+	1828	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	19	2	19	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGGGAGACTGTGGAGGA	NA	False	NA	-6	True	NA	NA	NA	40157262	40159090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159100
93480	chr17	-	2815	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.689839179321	1	112	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGAGTGTAGCCTTTTGTT	2373	False	NA	NA	False	NA	NA	NA	45744474	45702813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703908_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737556_45738841_45738969_45744316
93481	chr11	+	4144	16	Antisense	novelGene_ENSMUSG00000005198.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCTAGGGAGAAACAAAAACT	3226	False	NA	NA	False	NA	NA	NA	69625298	69634510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69626389_69626470_69626625_69626725_69626841_69626964_69627149_69627597_69627803_69628005_69628189_69628271_69628378_69630251_69630357_69630707_69630951_69631081_69631307_69631823_69632030_69632461_69632566_69632663_69632837_69633197_69633387_69633515_69634282_69634414
93482	chr13	-	4480	12	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_10	2064.54362515431	2	61	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTTTGGTGGTCTTTTTT	4751	False	NA	NA	False	NA	NA	NA	58550330	58539765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58547027_58547706_58547790_58548185_58548232_58550206
93484	chr5	+	2577	7	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	256	269	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	77.2040945949256	5	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATACCGCACTGGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	110071521	110092071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110071633_110076627_110076764_110077806_110077902_110088291_110088419_110088605_110088667_110089940_110090072_110090155
93485	chr10	-	5644	2	Intergenic	novelGene_3388	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	195	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCTGCATGCACATACAA	NA	False	NA	NA	False	NA	NA	NA	8427032	8419898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_8422861_8424350
93486	chr8	+	868	1	Genic_Genomic	ENSMUSG00000047986.13	novel	NA	NA	NA	NA	3360	7	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTATTTATTAATTTAT	NA	False	NA	NA	False	NA	NA	NA	84756063	84756931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_84756100_84756900
93487	chr10	-	3058	28	NNC	ENSMUSG00000052798.14	novel	3114	28	NA	NA	3	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	174.291330145995	68	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATAGATGAGAGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	117628607	117586531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_117586873_117587224_117587346_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
93488	chr6	+	2847	16	NNC	ENSMUSG00000053460.9	novel	2929	15	NA	NA	-9	174	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	13.0172535078982	4	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCTTTGAAGAAAGGAAG	1305	False	NA	NA	False	NA	NA	NA	72391314	72407869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949_72407283_72407514
93489	chr4	+	4381	5	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-265574	63383	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	192.39201516695	882	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	146429843	146806000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146429973_146697966_146698060_146797298_146797381_146800390_146800518_146802050
93490	chr1	-	3001	9	Antisense	novelGene_ENSMUSG00000026380.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGTTTCCGATCAGCT	NA	False	NA	NA	False	NA	NA	NA	118607329	118586765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_118586870_118589649_118589800_118592486_118592538_118592627_118592717_118593840_118593935_118596358_118596464_118597117_118597260_118603302_118603355_118605115
93491	chrM	+	2557	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-975	0	975	mono-exon	FALSE	NA	NA	NA	NA	NA	9	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTGACATATTTCTTT	-3	True	NA	22	True	NA	NA	NA	1093	3650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3600
93492	chr12	-	2130	4	Intergenic	novelGene_4297	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCCGCTGCCACCGCTC	NA	False	NA	NA	False	NA	NA	NA	17954147	17932138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_17932322_17950659_17950785_17950984_17951047_17952387
93493	chr4	+	3099	6	NNC	ENSMUSG00000078503.10	novel	597	5	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	205.541625954452	32	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTGCTTTGATTGT	913	False	NA	NA	False	NA	NA	NA	145237347	145265751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145238690_145238740_145247375_145247456_145257381_145257486_145261385_145261513_145263160
93494	chr17	-	1078	2	Intergenic	novelGene_83	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGATACATTTATATGC	NA	False	NA	NA	False	NA	NA	NA	23097164	23095194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_23095458_23096349
93495	chr4	-	4661	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	41	6	41	-6	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	346	81	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTACCTGCTGAGCCTTT	7745	False	NA	NA	False	NA	NA	NA	135749033	135730684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
93496	chr17	-	2555	9	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	285	1836	multi-exon	FALSE	canonical	3	31	junction_1	80.2090043261977	100	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCATGTTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	37299652	37278250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546_37298823_37299396
93497	chrM	-	829	2	Antisense	novelGene_ENSMUSG00000064345.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	31	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAAGATTGTGAAGTAGA	9984	False	NA	71	True	NA	NA	NA	4946	3958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_4395_4553
93498	chr13	+	4796	28	NNC	ENSMUSG00000057649.7	novel	2430	16	NA	NA	-25348	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	81.4168935934936	797	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGATCACCCCGTCCG	NA	False	NA	NA	False	NA	NA	NA	74060581	74109006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_74061458_74062605_74062679_74063578_74063690_74066529_74066686_74068115_74068223_74068468_74068554_74069291_74069352_74076025_74076105_74077778_74077869_74078278_74078337_74080978_74081109_74084227_74084392_74085608_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
93499	chr11	-	3719	16	NNC	ENSMUSG00000005198.16	novel	6740	29	NA	NA	-227	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	99.7114949352492	4	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	NA	False	NA	NA	NA	69633624	69624822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69625783_69625929_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512
93500	chrM	+	328	1	FSM	ENSMUSG00000064346.1	ENSMUST00000082397.1	67	1	-327	66	-327	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	4	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTTTAGGATATACTAGT	207	False	NA	6	True	NA	NA	NA	4622	4950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_4600_5000
93502	chr7	-	2956	26	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.195959179422654	6	56	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGGAGACGAGCAAGGGCG	9275	False	NA	NA	False	NA	NA	NA	13045349	13012760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016469_13019182_13019316_13020480_13020608_13022581_13022684_13025110_13025210_13025379_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037798_13039833_13039979_13040135_13040215_13041437_13041643_13043032_13043179_13044931_13045024_13045117
93503	chrX	-	1136	8	NNC	ENSMUSG00000025289.16	novel	990	7	NA	NA	-8795	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	384.502912597445	92	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTGCCATTGTAATTTC	NA	False	NA	NA	False	NA	NA	NA	154132545	154106912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108_154121424_154132360
93504	chr4	-	1054	4	ISM	ENSMUSG00000007880.17	ENSMUST00000138473.3	3964	10	31100	6227	997	-6227	internal_fragment	FALSE	canonical	3	88	junction_2	6.34209919681348	2	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTTTTTTTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	133450193	133423024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_133423468_133446847_133446965_133447860_133448311_133450149
93507	chr17	-	4481	14	NNC	ENSMUSG00000024042.8	novel	4521	14	NA	NA	25	-10	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_9	51.6911629909886	176	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCTTGGTTCACCTGTGA	NA	False	NA	NA	False	NA	NA	NA	32074742	32063233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32065618_32066006_32066236_32066868_32067151_32067605_32067823_32067932_32068056_32068492_32068649_32068901_32069126_32069699_32069824_32069914_32070040_32070202_32070371_32070506_32070571_32073181_32073299_32073867_32074039_32074645
93508	chr16	-	5615	15	FSM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	117	9	117	-9	multi-exon	FALSE	canonical	3	184	junction_8	23.9404021925877	253	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTTCTTAAATTTCC	NA	False	NA	NA	False	NA	NA	NA	31898043	31835116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_31839085_31840591_31840730_31841906_31842104_31846529_31846630_31850401_31850520_31852604_31852718_31853712_31853762_31856062_31856127_31858616_31858750_31860285_31860394_31861963_31861996_31862670_31862819_31863298_31863400_31870993_31871202_31897905
93509	chr13	-	4020	8	Antisense	novelGene_ENSMUSG00000113690.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	11.5475945016921	3	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCCTGTCCTTCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	62324014	62277706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62277842_62317254_62317380_62317564_62317627_62318961_62319425_62320095_62320932_62321014_62321982_62322538_62323672_62323715
93510	chr9	-	1372	6	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1458	4	233	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1608.66794584837	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8558	False	NA	NA	False	NA	NA	NA	78387548	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522
93512	chr4	+	3060	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-25	-12	intron_retention	FALSE	canonical	2	5	junction_1	280.96236402764	5	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTAAAAAAAATTGAGTTA	9755	False	NA	NA	False	NA	NA	NA	155648339	155675442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155648437_155661184_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155673066_155673150_155673784
93514	chr4	-	2955	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-18	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	108.849621037466	78	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCTTTGGTTGTTTTC	9505	False	NA	NA	False	NA	NA	NA	147894263	147838431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845710_147860154_147860286_147891546_147891641_147893953
93515	chr1	+	3457	14	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	96.8216807839158	107	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	NA	False	NA	NA	NA	132405116	132433397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420358_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
93516	chr8	-	3862	7	NNC	ENSMUSG00000031527.8	novel	5079	7	NA	NA	80	-1072	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	147.844231090248	129	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTTTCTCTCCACTTC	NA	False	NA	NA	False	NA	NA	NA	35962607	35933478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_35936525_35941550_35941666_35943612_35943723_35945713_35945798_35949669_35949881_35958354_35958534_35962490
93517	chr11	-	2478	16	NNC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	1	252	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	141.198300273056	1129	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTAAAGCCGCTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	84020425	83969493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_83970604_83972863_83972938_83975539_83975584_83976388_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
93518	chr8	+	3430	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-86	-2236	multi-exon	FALSE	non_canonical	0	0	junction_5	612.424036105704	313	87	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACACATAGTGTACACTC	NA	False	NA	NA	False	NA	NA	NA	19834675	20043652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20040764_20040952_20041225
93519	chr15	-	4086	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	9801	False	NA	NA	False	NA	NA	NA	22705089	22699885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22701287_22702310_22704584_22704677
93521	chr9	+	5723	18	NNC	ENSMUSG00000009741.16	novel	1623	16	NA	NA	300	49522	intron_retention	FALSE	non_canonical	0	0	junction_4	156.938023603572	337	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGCGCCGGCGACGCCC	5240	False	NA	NA	False	NA	NA	NA	113798592	113855792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_113799329_113801818_113801962_113802586_113802639_113804413_113808008_113808524_113808742_113813055_113813113_113813611_113813654_113814340_113814402_113815473_113815605_113818187_113818267_113818380_113818505_113819685_113819782_113819876_113819945_113829564_113829660_113832216_113832292_113832508_113832565_113847056_113847116_113855754
93523	chrX	-	3450	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	868	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	324.35561037767	1	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	93255389	93232312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93252972_93253024_93253057_93253141_93253270_93255324
93524	chr19	-	2787	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	22705271	22699838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22702585_22705016
93525	chr13	+	3069	4	FSM	ENSMUSG00000074867.5	ENSMUST00000099449.4	2571	4	11	-509	-6	509	multi-exon	FALSE	canonical	3	81	junction_1	97.7422915403335	1	124	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCGTAAGCTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	62277740	62321742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963
93526	chr15	+	3286	16	NIC	ENSMUSG00000022394.15	novel	3487	17	NA	NA	4	-4	intron_retention	FALSE	canonical	2	32	junction_11	166.360572251961	6	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAATGTGATGATATCAGAT	NA	False	NA	NA	False	NA	NA	NA	81548138	81572512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
93527	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	136	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
93528	chr7	-	5079	21	NIC	ENSMUSG00000031024.14	novel	4255	20	NA	NA	-1	755	combination_of_known_junctions	TRUE	canonical	3	65	junction_20	42.4156810625504	170	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTCTGCCTGTCCCCA	NA	False	NA	NA	False	NA	NA	NA	109302813	109122362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109216264_109216355_109302744
93529	chr2	-	5646	28	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	0	1419	intron_retention	FALSE	canonical	3	271	junction_24	29.0992813585317	389	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACTAATTAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	103591606	103550181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
93530	chr2	-	3139	6	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	26	-28	intron_retention	FALSE	canonical	3	12	junction_5	9.90757286120067	17	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATTCAAATGTAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	166349965	166341988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349807
93531	chr18	+	4484	25	Antisense	novelGene_ENSMUSG00000024613.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	55	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGGGAAACTGCATAGAG	NA	False	NA	NA	False	NA	NA	NA	60946833	60981526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_60947261_60947594_60947643_60948031_60948127_60949075_60949603_60951102_60951291_60952460_60952682_60954711_60954837_60955875_60956062_60960410_60960519_60961435_60961632_60961727_60961907_60962084_60962187_60964583_60964752_60964844_60965070_60965239_60965372_60965491_60965693_60965788_60966006_60966494_60966708_60968729_60968977_60970966_60971046_60971749_60971936_60972641_60972706_60976297_60976443_60978881_60978941_60981380
93532	chr11	-	3644	16	NNC	ENSMUSG00000020368.16	novel	4281	15	NA	NA	54	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1363.08692149677	4	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACATGTCTGCAGGTTTC	8190	False	NA	NA	False	NA	NA	NA	50216446	50185295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50185821_50185895_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202608_50216319
93533	chr9	-	2622	2	NNC	ENSMUSG00000039952.16	novel	4244	3	NA	NA	56144	-237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGTCATTGCCTCTGA	9770	False	NA	NA	False	NA	NA	NA	108084764	108082069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_108083728_108083800
93534	chr16	+	2283	9	NNC	ENSMUSG00000022961.19	novel	8426	13	NA	NA	-4345	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	98.6052736926378	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTCTTATTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	91452485	91476083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_91452827_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
93535	chr5	+	4415	6	NNC	ENSMUSG00000007812.17	novel	4157	5	NA	NA	-1	-3	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	185.368174183164	20	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGTAGACTCTTTGTTT	1304	False	NA	NA	False	NA	NA	NA	145168537	145184108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_145168642_145170250_145170413_145172546_145172674_145173859_145174053_145179729_145179835_145180384
93536	chr1	-	494	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	678	1	NA	NA	-161	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24653303_24653650
93537	chr6	-	3575	13	NNC	ENSMUSG00000030353.16	novel	3076	12	NA	NA	4281	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	34.0794618828147	228	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATCTGCGCTCGTGTGATT	5713	False	NA	NA	False	NA	NA	NA	128273420	128201248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128202019_128204039_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128273238
93538	chr19	+	2893	7	NIC	ENSMUSG00000010663.6	novel	3460	12	NA	NA	3205	0	intron_retention	FALSE	canonical	3	652	junction_3	75.8479839327761	418	87	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	NA	False	NA	NA	NA	10164122	10174238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171762_10171852_10171979_10172234
93539	chr7	+	1634	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	-75	4	-6	2	multi-exon	FALSE	canonical	3	40	junction_6	37.5340586075574	109	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTTTTCAATTCT	NA	False	NA	NA	False	NA	NA	NA	28416222	28437565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
93540	chr19	-	2585	14	ISM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	-40	26334	-40	6586	5prime_fragment	FALSE	canonical	3	707	junction_2	54.642355204077	20	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTATGCTGGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	37340050	37272475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
93541	chr7	-	8446	1	Antisense	novelGene_ENSMUSG00000055320.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	260	48	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTCTCCTCCTTACCC	NA	False	NA	NA	False	NA	NA	NA	112505973	112497527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_112497500_112506000
93542	chr15	+	9902	47	Antisense	novelGene_ENSMUSG00000022141.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	236	24	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATGCCGACCGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	8319790	8474109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_8321075_8321620_8321810_8322567_8322745_8324996_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332510_8332875_8333056_8335336_8335422_8336351_8336512_8337050_8337141_8337327_8337473_8340628_8340770_8341820_8341927_8347846_8347899_8348938_8349040_8351969_8352104_8352891_8353040_8353135_8353235_8353731_8353834_8353927_8354144_8355167_8355256_8356480_8356627_8357227_8357362_8357875_8357957_8359659_8359797_8361868_8361971_8362488_8362571_8363062_8363216_8364332_8364566_8364667_8364752_8366333_8366440_8367990_8368083_8368164_8368237_8368358_8368557_8372958_8373139_8379684_8381296_8388123_8388750_8390398_8390496_8391200_8391363_8395275_8395428_8396113_8396213_8398943_8399073_8401514_8401681_8403443_8403587_8473608
93543	chr4	-	2244	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	65	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	463.737742926836	27	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137523630	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469810_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
93544	chrM	-	1066	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGTTTCTGTAGTTGAA	978	False	NA	NA	False	NA	NA	NA	15210	14144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14100_15200
93546	chr17	-	6408	17	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	49	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCAAATGTGCGGCTACC	NA	False	NA	NA	False	NA	NA	NA	36170556	36152402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36152570_36155321_36155461_36156728_36157111_36157192_36157268_36158212_36159557_36159682_36159748_36159896_36159990_36161184_36161403_36162001_36162048_36163305_36164779_36164910_36165003_36165092_36165219_36165312_36165490_36165744_36165872_36165989_36166101_36168352_36169374_36169804
93547	chr4	-	2721	4	NIC	ENSMUSG00000073888.14	novel	841	5	NA	NA	142	-36	intron_retention	FALSE	canonical	3	81	junction_1	8.33999733546454	136	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAACAGCAAAACTAATAAA	375	False	NA	NA	False	NA	NA	NA	41773795	41769513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41769655_41769843_41769977_41771137_41773525_41773735
93548	chr2	-	3726	26	NNC	ENSMUSG00000061136.17	novel	7374	26	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	179.178998769387	1	16	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCACTAGTCTTTATTT	NA	False	NA	NA	False	NA	NA	NA	53081193	53028253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046864_53046935_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53066374_53066429_53067364_53067446_53079980_53080113_53081034
93549	chr2	+	1577	1	Intergenic	novelGene_2844	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGGAGCACCCTACTGCT	NA	False	NA	NA	False	NA	NA	NA	176952942	176954519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_176952900_176954500
93550	chr14	-	5407	13	NNC	ENSMUSG00000021796.16	novel	5956	13	NA	NA	1085	-341	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_12	34.1747957809065	163	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTATACTTCAGTGATG	NA	False	NA	NA	False	NA	NA	NA	34223400	34133031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_34136627_34136716_34136848_34137663_34137840_34144516_34144815_34146902_34147096_34151612_34151758_34156335_34156436_34156594_34156692_34163055_34163159_34165775_34165939_34169728_34169936_34182455_34182573_34223318
93551	chrM	+	1407	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	175	0	-175	mono-exon	FALSE	NA	NA	NA	NA	NA	13	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGTGATCTGAGTTCAGACC	-3	True	NA	22	True	NA	NA	NA	1093	2500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2500
93552	chr7	-	4432	20	FSM	ENSMUSG00000031024.14	ENSMUST00000077909.9	4612	20	179	1	-21	-1	multi-exon	FALSE	canonical	3	89	junction_19	35.017605386157	169	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGAAGAGTCTTATTGTG	NA	False	NA	NA	False	NA	NA	NA	109215781	109123127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109156669_109169213_109169319_109215504
93553	chr6	-	4008	4	ISM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	3425	477	3356	-477	3prime_fragment	FALSE	canonical	3	862	junction_1	97.5329004319397	22	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTTAGCTCCAGTGC	NA	False	NA	NA	False	NA	NA	NA	145192540	145162901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_145166451_145177820_145177981_145179973_145180153_145192420
93554	chr8	-	8502	9	ISM	ENSMUSG00000035569.18	ENSMUST00000172906.8	8481	13	74664	-487	-349	487	3prime_fragment	TRUE	canonical	3	186	junction_5	90.4913669915534	337	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGTACATGGCACTGT	NA	False	NA	NA	False	NA	NA	NA	123626868	123610073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_123611076_123612388_123612482_123614052_123614197_123614266_123614366_123616377_123622896_123623298_123623447_123625312_123625456_123626342_123626547_123626717
93556	chr16	+	2645	10	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	1	-1	intron_retention	FALSE	canonical	3	380	junction_9	650.957755925836	84	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22930343_22930566_22930647_22931100_22931212_22931916
93557	chr19	+	2508	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	27	600	27	-600	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGGACATACAAATCTTCAT	3496	False	NA	NA	False	NA	NA	NA	8919265	8929067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
93558	chr2	-	859	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	-32	-77	-32	77	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTCAAATGGCACAACAA	NA	False	NA	NA	False	NA	NA	NA	75022198	75021339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_75021300_75022200
93559	chr15	+	4108	2	Intergenic	novelGene_3242	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	63	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22700893	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22701337_22701430
93560	chr4	+	3146	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	152.664861706943	57	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586450	146623849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586602_146597241_146597335_146611174_146611250_146616526_146616611_146619877_146620005_146621233
93561	chr4	+	4592	20	ISM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	356	7	356	-7	intron_retention	FALSE	canonical	3	234	junction_5	34.8338358766825	34	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAAAACGTGTTGGCTTTG	30	True	NA	NA	False	NA	NA	NA	40143436	40198331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244
93562	chr12	+	5641	16	NNC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-826	2	intron_retention	FALSE	non_canonical	0	0	junction_15	298.438826785881	6	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTGTGAAGTACAATT	1626	False	NA	NA	False	NA	NA	NA	109602447	109628145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109604361_109606700_109606763_109608998_109609087_109609847_109609896_109611695_109611766_109612280_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179_109627823_109627870
93563	chr7	+	2938	5	Antisense	novelGene_ENSMUSG00000108731.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	99	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCAGCTAAACACAGGAGC	NA	False	NA	NA	False	NA	NA	NA	26581763	26711436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_26582366_26583006_26583566_26583787_26583944_26584040_26584154_26709928
93564	chr6	-	4249	23	NNC	ENSMUSG00000012535.15	novel	3590	24	NA	NA	-31	0	intron_retention	FALSE	canonical	3	27	junction_22	211.132331892223	29	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	-8	True	NA	NA	False	NA	NA	NA	29609849	29540825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586144_29589027_29589229_29599538_29599698_29609364
93565	chr3	-	2287	20	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	39	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTGGAGTAGTCGGCC	NA	False	NA	NA	False	NA	NA	NA	151938423	151916251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916336_151919611_151919703_151921226_151921268_151923045_151923084_151923466_151923520_151923609_151923684_151923848_151923907_151925318_151925482_151925567_151925667_151925770_151925875_151926101_151926203_151926320_151926422_151926901_151927044_151927718_151927881_151928464_151928614_151928916_151929003_151931717_151931850_151933809_151933882_151937512_151937656_151938029
93566	chr14	-	5071	23	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-5	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.1929199234314	2	20	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655161	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650184_54650242_54651024_54651105_54651336_54651471_54654045_54654228_54654771
93567	chrM	-	2548	2	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	177	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCAGAGTGTTCATTGGT	5	True	NA	11	True	NA	NA	NA	3698	1096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2974_3027
93569	chr7	+	1027	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-18	223	-18	-223	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGTGGTGGACCTCATGG	NA	False	NA	NA	False	NA	NA	NA	51396376	51397403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397400
93570	chr2	+	3112	11	NNC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	-12	1172	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	3468.77918005745	2	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTCCTTTTATTCATA	7463	False	NA	NA	False	NA	NA	NA	75489592	75497637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495465_75495555_75495646_75495741
93572	chr3	+	3223	13	NNC	ENSMUSG00000028101.19	novel	2695	15	NA	NA	0	0	intron_retention	FALSE	canonical	2	4	junction_6	62.9448612323163	145	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3321	False	NA	NA	False	NA	NA	NA	96604432	96613278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608928_96609038_96609489_96609564_96609672_96609834_96610841_96610945_96611054_96611224_96611374_96611509_96611664
93573	chr5	+	1572	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGCCTCGTCACCCA	NA	False	NA	NA	False	NA	NA	NA	142888871	142891174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142889993_142890144_142890540_142890993
93574	chr1	+	3527	9	NNC	ENSMUSG00000036707.17	novel	3805	9	NA	NA	9680	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	132.449459700672	213	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGATGTCCTTTAGAC	NA	False	NA	NA	False	NA	NA	NA	85731911	85779297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_85732015_85746077_85746235_85763043_85763209_85765006_85765126_85769918_85770088_85772313_85772374_85775130_85775197_85775997_85776142_85776753
93575	chr7	+	497	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	90	519	-26	-15	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	8	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGGCCTCCAAAATGTTT	2783	False	NA	NA	False	NA	NA	NA	4795962	4797546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
93577	chr12	-	6301	36	NNC	ENSMUSG00000021252.12	novel	1169	5	NA	NA	-229209	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	220.517387902512	2357	16	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGATCCGTCTGTGTA	NA	False	NA	NA	False	NA	NA	NA	86100533	85862228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_85862968_85863089_85863209_85866177_85866344_85868861_85869023_85871244_85871859_85873224_85873399_85878668_85878774_85890549_85890635_85892020_85892125_85896021_85896156_85904153_85904235_85910335_85910407_85911297_85911380_85923261_85923365_85925158_85925250_85926138_85926249_85935931_85936012_85937789_85937855_85938887_85938983_85945764_85945879_85946162_85946258_85955565_85955627_85959322_85959364_85964447_85964605_85965702_85966010_85969729_85969851_85972411_85972559_85973573_85973678_85976635_85976765_85979497_85979583_85980055_85980446_85986096_85986283_86003337_86003491_86042770_86042969_86059419_86059637_86099916
93578	chr4	+	2803	1	Antisense	novelGene_ENSMUSG00000038172.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCAAAACCACTTACTCCA	NA	False	NA	NA	False	NA	NA	NA	83143101	83145904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_83143100_83145900
93580	chr13	+	2685	3	Fusion	ENSMUSG00000113626.2_ENSMUSG00000074867.5	novel	2239	3	NA	NA	336	519	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	2332	False	NA	NA	False	NA	NA	NA	62008965	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_62009251_62083173_62083197_62319375
93581	chr13	-	3155	12	NIC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	3	-47	intron_retention	FALSE	canonical	3	330	junction_8	1991.95501376399	1	27	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTTGTGTGTTGAATT	4768	False	NA	NA	False	NA	NA	NA	58550313	58539197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_58540291_58541009_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
93582	chr11	-	4250	2	Intergenic	novelGene_2323	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	61	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57450800	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446936_57447850
93583	chr2	-	10774	26	Antisense	novelGene_ENSMUSG00000043535.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	278	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGCTAGAACAGCAGACGG	NA	False	NA	NA	False	NA	NA	NA	29072480	29015198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29015561_29015862_29015974_29016883_29017074_29020189_29020403_29023933_29024042_29029227_29029450_29030278_29030400_29033900_29034070_29034185_29034276_29034612_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048276_29048850_29049008_29051481_29051586_29051761_29051875_29052986_29053060_29054411_29054561_29056276_29056387_29061173_29061359_29062323_29062421_29063568_29063732_29066886_29066987_29067525_29067614_29069410
93585	chr1	-	8066	1	Intergenic	novelGene_394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	213	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTGTTGTGTTCTATTCG	NA	False	NA	NA	False	NA	NA	NA	83966975	83958909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_83958900_83967000
93586	chr5	-	2058	5	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_2	4768.3840226538	1	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTGTGTCCTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	65548337	65545707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65545785_65545904_65547016_65547121_65547827_65548081_65548198_65548288
93587	SIRV8002	-	3798	2	Antisense	novelGene_SIRV8002A_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	85	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	3846	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV8002_-_1347_1394
93588	chr9	-	3208	9	NNC	ENSMUSG00000039048.16	novel	3260	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	32	junction_3	60.7637587300193	1216	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122242	35115503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35116420_35116600_35116706_35116884_35116987_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711
93589	chr2	+	3387	5	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	4	3513	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.0746772020624	219	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	150023678	150038712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775_150035201_150037050
93590	chr17	+	10762	3	FSM	ENSMUSG00000039218.18_ENSMUSG00000092981.3	ENSMUST00000190568.2	597	3	-9759	-406	1866	-3	multi-exon	FALSE	canonical	3	162	junction_1	16	94	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTAATTGGTCTGTAGT	NA	False	NA	NA	False	NA	NA	NA	24032739	24043707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_24042879_24042989_24043095_24043189
93591	chr17	-	2395	1	Intergenic	novelGene_323	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGTTCGGGAGAAGCTT	NA	False	NA	NA	False	NA	NA	NA	94994241	94991846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_94991800_94994200
93592	chr4	-	1482	3	Antisense	novelGene_ENSMUSG00000039953.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCGTTCACAGACACTCT	9807	False	NA	NA	False	NA	NA	NA	149732415	149730122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_149730830_149731218_149731406_149731827
93593	chr9	+	3321	10	NNC	ENSMUSG00000031939.17	novel	1210	11	NA	NA	0	-1	intron_retention	TRUE	non_canonical	0	0	junction_9	187.519941326414	12	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTTATAGTTTGTAT	NA	False	NA	NA	False	NA	NA	NA	15219021	15228271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15226428_15226678_15227213_15227375
93594	chr5	+	4131	27	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	336	47	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCGGGCCGGCACTTCC	NA	False	NA	NA	False	NA	NA	NA	100509507	100564093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516210_100521281_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531655_100531783_100532982_100533164_100533987_100534063_100536389_100536470_100536925_100536966_100538617_100538696_100540257_100540490_100540741_100540875_100541061_100541221_100543657_100543759_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555136_100555887_100555973_100563961
93595	chr11	-	4078	3	Intergenic	novelGene_2299	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATTTGCAGCAAGACCC	NA	False	NA	NA	False	NA	NA	NA	57450923	57433756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433770_57445660_57446931_57448128
93596	chr4	-	2845	2	Intergenic	novelGene_1910	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	0	12	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATAAAAACTCCACACTCG	NA	False	NA	NA	False	NA	NA	NA	101731021	101720518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_101723300_101730957
93598	chr17	-	2856	8	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	4	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	3584.22256961973	100	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884193	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879171_45879489_45879783_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882838_45884092
93599	chr1	-	6401	22	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	-2251	475	combination_of_known_junctions	FALSE	canonical	3	42	junction_19	13.4787983342414	152	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACTCTAGGTATTGGA	NA	False	NA	NA	False	NA	NA	NA	135397662	135366110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369
93600	chr15	+	971	5	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	9	-8	intron_retention	FALSE	canonical	3	5295	junction_1	2610.90927647822	12	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788286	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788310_76788502_76788651_76788738_76789237_76790055_76790172_76790320
93601	chr4	-	2041	3	NNC	ENSMUSG00000037242.9	novel	4119	6	NA	NA	56657	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCACTATCAAAGGATTC	NA	False	NA	NA	False	NA	NA	NA	134943468	134941293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_134941977_134942042_134942188_134942255
93602	chr5	+	1009	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	384	212	228	-212	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697909	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
93603	chr3	-	2392	6	NIC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	9	0	intron_retention	FALSE	canonical	3	739	junction_1	45.3590123349263	8	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGATCAAAGAATCCCTT	NA	False	NA	NA	False	NA	NA	NA	89121205	89116393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89116729_89116811_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183
93604	chr1	+	3526	9	NIC	ENSMUSG00000026275.14	novel	10315	10	NA	NA	-7	-5878	combination_of_known_splicesites	FALSE	canonical	3	27	junction_6	208.918307898087	20	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTGTAGAATCTGATAGA	NA	False	NA	NA	False	NA	NA	NA	93271369	93295333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93285478_93285584_93288447_93288535_93292611
93605	chr11	-	1772	14	NNC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	319.704079149535	15	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGCAGAGATCTCTAG	NA	False	NA	NA	False	NA	NA	NA	120687221	120680029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684713_120685093_120685145_120685728_120685838_120686302_120686550_120687044
93607	chr14	+	1161	1	NIC	ENSMUSG00000036291.7	novel	6321	8	NA	NA	2206	-142	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAGATGAGCATAATGA	NA	False	NA	NA	False	NA	NA	NA	49323519	49324680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_49323500_49324700
93608	chr11	+	16747	68	NNC	ENSMUSG00000070327.15	novel	16716	67	NA	NA	-3001	-4	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	45.8771641477851	251	33	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCACAGCTAAGAGTCCTG	6029	False	NA	NA	False	NA	NA	NA	119280924	119378237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_119280953_119283909_119284023_119293347_119293518_119299539_119300008_119300238_119300353_119300930_119301101_119301547_119301704_119302252_119302465_119305157_119305442_119305864_119306125_119307272_119307471_119308899_119309126_119309998_119310055_119310891_119311046_119312139_119312305_119313830_119313921_119314981_119315105_119316818_119317000_119318321_119318496_119318838_119318989_119320991_119321576_119322413_119322580_119324236_119324455_119325513_119325655_119325761_119325930_119326736_119327887_119328443_119328638_119328798_119328955_119331014_119334618_119336455_119336593_119336935_119337032_119338060_119338180_119339579_119339700_119340067_119340181_119340549_119340701_119340918_119341058_119343336_119343529_119345265_119345412_119346978_119347134_119349093_119349319_119349558_119349741_119350766_119350888_119352716_119352818_119352926_119353110_119354129_119354300_119354393_119354494_119355830_119355943_119356711_119356923_119357049_119357241_119358052_119358176_119358795_119358907_119359643_119359887_119360957_119361040_119361680_119361716_119362540_119362636_119364189_119364350_119364991_119365161_119367288_119367381_119367874_119368127_119370362_119370496_119370689_119370774_119371576_119371758_119371971_119372174_119373222_119373301_119373756_119373952_119374480_119374571_119374662_119374842_119376830
93609	chr2	+	3198	3	FSM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	7	-2468	7	2468	multi-exon	FALSE	canonical	3	53	junction_2	6	180	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	179056735	179061143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_179056894_179057552_179057714_179058264
93610	chr9	+	4266	9	ISM	ENSMUSG00000032294.18	ENSMUST00000163694.4	2041	11	-13	1138	-13	-1138	intron_retention	FALSE	canonical	3	941	junction_8	5629.06144485917	5	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGTGGCCAGGTACCGC	1856	False	NA	NA	False	NA	NA	NA	59563842	59585334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582311
93611	chr11	+	3140	10	Fusion	ENSMUSG00000036275.14_ENSMUSG00000020402.12	novel	951	10	NA	NA	-73	-5	multi-exon	FALSE	canonical	3	6	junction_8	1336.7206140402	793	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTATAAATCTGCTTCTG	5333	False	NA	NA	False	NA	NA	NA	52251888	52299545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52293872_52294385_52297771
93612	chr2	-	3437	25	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	30	-1559	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	77.8960199917528	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGGGTTATGTCTTGA	NA	False	NA	NA	False	NA	NA	NA	62242335	62161975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203214_62204708_62204953_62209436_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
93613	chr2	+	2117	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	27	2468	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	26.5	47	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	NA	False	NA	NA	NA	179056755	179061143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_179056894_179057552_179057714_179059325
93614	chr1	-	5499	8	NNC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-789	22	intron_retention	FALSE	non_canonical	0	0	junction_2	188.476491253159	1884	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTAAAGCTGGTTCCT	NA	False	NA	NA	False	NA	NA	NA	13198176	13183658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13184712_13186003_13187033_13187695_13188440_13188631_13189190_13192584_13192856_13194586_13194897_13195389_13196081_13197333
93616	chr7	+	7170	10	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	9	-4	combination_of_known_junctions	FALSE	canonical	3	169	junction_6	29.7138617525039	351	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTACGGTCAAGACTCACTT	NA	False	NA	NA	False	NA	NA	NA	29683388	29727703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713264_29713315_29714490_29714615_29716591_29716688_29721642
93618	chr7	+	5490	3	Antisense	novelGene_ENSMUSG00000097415.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGCTGACGCAGTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	75424614	75431838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_75426142_75426580_75430503_75431797
93619	chr11	+	3129	8	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	-37	1623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	89.1320964201162	517	105	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGAGAATTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	62349396	62406866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729_62405779_62406335
93620	chr17	-	5878	15	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCCGCGCGCGCGCGCCA	NA	False	NA	NA	False	NA	NA	NA	36170550	36152566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36152656_36155321_36155461_36156728_36157111_36157192_36157268_36158212_36159557_36159682_36159748_36159896_36159990_36161184_36162048_36163305_36164779_36164910_36165003_36165092_36165219_36165312_36165490_36165745_36165872_36165989_36166102_36169828
93621	chr3	-	3116	26	NNC	ENSMUSG00000042520.17	novel	2681	21	NA	NA	12	-1244	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	250.833171650003	1	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTGTCTGCCTCTGCCTC	3532	False	NA	NA	False	NA	NA	NA	89959797	89914770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89914834_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
93622	chr1	-	839	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	0	-161	0	mono-exon	FALSE	NA	NA	NA	NA	NA	151	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	24653893	24653054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
93623	chr17	+	8566	5	FSM	ENSMUSG00000090115.8_ENSMUSG00000084880.2	ENSMUST00000152724.2	1443	5	-2	-7121	-2	1439	multi-exon	FALSE	canonical	3	25	junction_4	46.8794997840207	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATCGGAGGCGGAGCCC	NA	False	NA	NA	False	NA	NA	NA	47983642	47999102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
93624	chr13	-	3143	5	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7487	1304	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	92.8789534824763	205	24	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	66828880	66816687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66819455_66821007_66821069_66821267_66821395_66824028_66824106_66828769
93625	chr8	-	4359	4	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	-22	0	intron_retention	FALSE	non_canonical	0	0	junction_3	2017.32567744747	90	102	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	43760039	43748099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749574_43753664_43753743_43755911_43758069_43759389
93626	chr8	+	4053	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-9	-767	multi-exon	FALSE	non_canonical	0	0	junction_1	580.074133193336	37	78	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATAGGTGTGGCACC	NA	False	NA	NA	False	NA	NA	NA	19834752	20045121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834871_20030550_20030757_20035860_20036160_20039783_20039904_20041811
93627	chr2	+	4194	6	FSM	ENSMUSG00000078864.11	ENSMUST00000148388.2	744	6	-28	-3422	-28	2912	multi-exon	FALSE	canonical	3	97	junction_4	86.0497530501977	832	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTAAAAGGAGGGTCA	NA	False	NA	NA	False	NA	NA	NA	177401052	177415177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_177401169_177404638_177404694_177409531_177409569_177409836_177409964_177410168_177410230_177411379
93628	chr17	-	5973	24	NNC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	-16	44928	intron_retention	FALSE	non_canonical	0	0	junction_1	82.065951623551	438	13	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCAGCGCGCATGCGCCG	NA	False	NA	NA	False	NA	NA	NA	25459114	25407376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25407465_25408437_25408650_25418740_25418915_25420012_25420148_25424570_25424707_25427060_25427176_25428523_25428613_25429777_25429854_25432014_25432079_25437549_25437728_25447554_25447638_25448209_25448437_25449176_25449381_25449491_25449748_25450683_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458946_25459033
93629	chr16	+	564	1	Intergenic	novelGene_3753	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
93630	chr18	+	8385	13	Antisense	novelGene_ENSMUSG00000065904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	178	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGGCCCGGAGCTGCGTGC	NA	False	NA	NA	False	NA	NA	NA	35070692	35087347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35071449_35071638_35071778_35071985_35072078_35072394_35072493_35073250_35073368_35073892_35073996_35074915_35076347_35079004_35079090_35079548_35079712_35080963_35081070_35081157_35081233_35082069_35083249_35083306
93631	chr10	-	4813	18	FSM	ENSMUSG00000069539.12	ENSMUST00000174252.8	4817	18	-3	7	-3	-7	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	176	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACATTTCTTTGGAAC	NA	False	NA	NA	False	NA	NA	NA	89522150	89474589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_89476979_89477852_89477973_89481323_89481420_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
93632	chr1	+	2909	8	Antisense	novelGene_ENSMUSG00000102982.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.19912527334259	4	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTCTCGTGACGTCAGGC	NA	False	NA	NA	False	NA	NA	NA	13695068	13730757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13695258_13695313_13697129_13697579_13697661_13700287_13700437_13708453_13708638_13717613_13717736_13720944_13721108_13730551
93633	chr7	+	2783	18	Antisense	novelGene_ENSMUSG00000086526.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	65	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCGGAAGAGTAGTTGAGT	NA	False	NA	NA	False	NA	NA	NA	33900757	33930111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_33901128_33901569_33901977_33902061_33902150_33903408_33903583_33904992_33905072_33905232_33905360_33907029_33907183_33907280_33907328_33907676_33907736_33915380_33915441_33917726_33917768_33918455_33918530_33920040_33920182_33920264_33920354_33926544_33926662_33928351_33928426_33928710_33928799_33929516
93634	chr2	+	2939	12	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	455.979066505151	7	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTTAGAAGACTAGAGT	651	False	NA	NA	False	NA	NA	NA	26279357	26287118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282608_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
93635	chr11	+	9567	66	ISM	ENSMUSG00000056342.17	ENSMUST00000137823.8	11363	80	56936	3	-51124	-3	3prime_fragment	FALSE	canonical	3	24	junction_1	23.5322968297368	249	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGTTTTATTTTTATTG	6901	False	NA	NA	False	NA	NA	NA	23313851	23439741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_23314513_23317338_23317554_23320238_23320355_23320443_23320572_23323320_23323411_23325000_23325097_23327554_23327638_23331224_23331380_23332553_23332668_23334400_23334501_23335012_23335173_23338433_23338561_23338663_23338812_23342841_23342943_23343751_23343962_23351452_23351579_23353559_23353683_23353811_23353896_23355866_23355954_23362214_23362416_23364735_23364819_23367462_23367504_23367648_23367774_23368978_23369132_23370039_23370145_23371097_23371154_23371245_23371367_23376061_23376246_23376634_23376796_23379299_23379366_23382245_23382393_23382477_23382535_23382618_23382697_23383179_23383275_23385906_23386080_23388866_23389021_23391099_23391179_23394146_23394201_23394305_23394402_23396431_23396497_23396578_23396655_23396743_23396792_23396917_23396984_23399212_23399294_23401995_23402082_23402518_23402688_23402790_23402866_23404524_23404677_23407797_23407847_23407931_23408037_23408114_23408160_23409123_23409229_23410561_23410710_23414216_23414852_23417145_23417304_23418804_23418884_23420288_23420416_23421481_23421590_23422949_23423055_23423169_23423295_23424265_23424390_23434101_23434182_23436817_23436959_23437078_23437223_23438208_23438369_23438583
93636	chr5	-	6952	3	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	510	-200	intron_retention	FALSE	non_canonical	0	0	junction_2	333.5	27	130	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATGACCCCAAGACAAGA	NA	False	NA	NA	False	NA	NA	NA	121045074	121034518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121040118_121043658_121044256_121044318
93637	chr5	-	3988	9	Antisense	novelGene_ENSMUSG00000032623.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	45	80	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCTGGATACCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121059698	121027250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121027316_121047387_121048166_121048597_121049810_121052669_121053128_121053722_121054014_121054901_121055096_121057061_121057295_121057956_121058113_121059097
93638	chr5	-	4823	6	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	36	117737	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	97.1814797170737	429	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGAAACACACAAACAGAC	NA	False	NA	NA	False	NA	NA	NA	105007900	104843297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_104844304_104960085_104963302_104964564_104964626_104964862_104964990_104965173_104965219_105007532
93639	chr18	+	2736	10	Antisense	novelGene_ENSMUSG00000094306.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCCCGCGGAGCTGGGGG	NA	False	NA	NA	False	NA	NA	NA	14758685	14815832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_14760368_14766598_14766732_14769550_14769675_14770444_14770537_14773308_14773418_14774011_14774186_14788086_14788238_14803365_14803448_14812440_14812521_14815723
93640	chr18	+	2337	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26708	-4	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	660	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAACTATGTAGCATTTA	6377	False	NA	NA	False	NA	NA	NA	77126195	77234629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
93641	chr17	+	1816	5	ISM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	3794	462	43	14	3prime_fragment	FALSE	canonical	3	1763	junction_2	148.476429105767	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGTTCCAACATGAGCCT	NA	False	NA	NA	False	NA	NA	NA	29255395	29261885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
93642	chr16	+	564	1	Intergenic	novelGene_3754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
93643	chr9	-	1700	13	ISM	ENSMUSG00000049313.9	ENSMUST00000060989.9	10715	48	92486	31503	-45977	-11715	internal_fragment	FALSE	canonical	3	333	junction_11	41.6549983662092	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGTGACGGCCACCAAGA	NA	False	NA	NA	False	NA	NA	NA	41943107	41907518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_41907617_41911539_41911696_41912766_41912902_41913849_41913982_41915281_41915414_41917101_41917210_41919474_41919601_41925750_41925871_41929411_41929535_41933631_41933746_41935591_41935766_41942174_41942314_41942964
93644	chr14	-	3064	21	Antisense	novelGene_ENSMUSG00000002325.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAATCCCACCTCAGGGC	NA	False	NA	NA	False	NA	NA	NA	55841128	55829414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55829527_55829623_55829770_55829914_55830068_55830283_55830350_55830462_55830531_55831749_55831919_55832524_55832757_55832924_55833215_55833460_55833711_55833796_55833988_55834109_55834315_55836093_55836265_55836356_55836457_55836546_55836640_55838502_55838619_55838733_55838855_55839095_55839211_55839335_55839394_55840057_55840157_55840712_55840879_55840985
93645	chr6	+	1066	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-490	-111	490	mono-exon	FALSE	NA	NA	NA	NA	NA	2	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCCTCAGAGCTGGCTCC	NA	False	NA	NA	False	NA	NA	NA	37782909	37783975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
93647	chr4	+	3338	6	NNC	ENSMUSG00000056300.15	novel	2953	4	NA	NA	-159973	62	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	158.087823693035	23	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTCTCATAAAGTATTT	NA	False	NA	NA	False	NA	NA	NA	146426510	146623914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146599350_146599500_146616526_146616611_146619877_146620005_146621233
93648	chr1	+	3516	14	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_11	93.6120029728652	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	NA	False	NA	NA	NA	132405041	132433397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424595_132424767_132425667_132425746_132431501
93649	chr10	-	3547	19	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	371	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	112.56405583785	54	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCGGAGTGGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	62175950	62104886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105168_62105274_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
93650	chr4	-	8069	2	Antisense	novelGene_ENSMUSG00002076931.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	97	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	81964637	81822257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_81826425_81960735
93651	chr11	-	3074	2	Intergenic	novelGene_2447	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	10	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAATCGTGGTCTCGCTG	NA	False	NA	NA	False	NA	NA	NA	88787247	88781079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_88783940_88787033
93652	chrM	+	772	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	70	-161	-70	mono-exon	FALSE	NA	NA	NA	NA	NA	10	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTAGCATTAATTCAAG	-11	True	NA	NA	False	NA	NA	NA	7765	8537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8500
93653	chr12	+	7103	7	NNC	ENSMUSG00000035133.10	novel	9323	7	NA	NA	12	904	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_1	83.7842798832547	233	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAATTAAATCATTTGT	NA	False	NA	NA	False	NA	NA	NA	52550810	52616522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_52550832_52562861_52566751_52589271_52589420_52604271_52604350_52606750_52606883_52609104_52609211_52613793
93654	chr17	+	2603	9	ISM	ENSMUSG00000024180.15	ENSMUST00000128597.3	2433	12	1205	-906	7	-1	3prime_fragment	FALSE	canonical	3	294	junction_3	45.0576020223003	185	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGGTCTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	26336809	26342227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_26336982_26337083_26337404_26337835_26337927_26338006_26338131_26338372_26338510_26339257_26339437_26339512_26339660_26340513_26340631_26340911
93655	chr9	+	739	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-205	-44	205	mono-exon	FALSE	NA	NA	NA	NA	NA	98	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	96777666	96778405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
93656	chr11	-	1185	5	NNC	ENSMUSG00000020738.17	novel	1051	4	NA	NA	-6	1550	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1749.10582512894	1054	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAGGCTATCAGCTGATC	NA	False	NA	NA	False	NA	NA	NA	115427061	115412377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115412561_115413935_115414596_115421171_115421244_115425377_115425510_115426923
93657	chr2	+	8056	34	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	2	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	164.828675280347	21	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATGTTACATACCACTG	NA	False	NA	NA	False	NA	NA	NA	51962845	52012122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51962879_51963148_51963266_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
93658	chr17	+	2269	13	Fusion	ENSMUSG00000023904.11_ENSMUSG00000043782.10	novel	1941	10	NA	NA	2492	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	139.140815962343	2900	10	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGATTTCTCAGCAGCCTT	6713	False	NA	NA	False	NA	NA	NA	23887591	23894198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_23887859_23887947_23888087_23888172_23888279_23888359_23888553_23888821_23888924_23889009_23889084_23889168_23889226_23889406_23889527_23889614_23889691_23889771_23889884_23892489_23893043_23893520_23893650_23893857
93659	chr4	+	2319	12	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	694	9	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCGCACACGTTTAAGCAC	255	False	NA	NA	False	NA	NA	NA	137469054	137490857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882_137485976_137490842
93660	chr5	-	7952	6	NNC	ENSMUSG00000023452.20	novel	3097	6	NA	NA	-2	61902	intron_retention	FALSE	non_canonical	0	0	junction_1	328.884539010273	228	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACAGACTGGCTACACAAA	7832	False	NA	NA	False	NA	NA	NA	32899821	32831742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_32838140_32895108_32895491_32895731_32895879_32896125_32896718_32897967_32898134_32899553
93661	chr2	-	993	3	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11322	190	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	11426163	11413651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414319_11425639_11425789_11425986
93662	chr1	-	4143	14	NIC	ENSMUSG00000037474.14	novel	4212	15	NA	NA	-9	-4	combination_of_known_splicesites	FALSE	canonical	2	13	junction_7	131.601019761881	520	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTTTGTGGAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	191307665	191269480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
93663	chr2	-	2973	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	3	-9	intron_retention	FALSE	non_canonical	0	0	junction_8	155.273275227903	1	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTAACAAAACTAGTGT	NA	False	NA	NA	False	NA	NA	NA	120234591	120185805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120231732_120231804_120233190_120233252_120234385
93664	chr16	+	4181	11	NNC	ENSMUSG00000022801.14	novel	5536	21	NA	NA	28269	40695	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	148	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGAGCGCGGCTTG	NA	False	NA	NA	False	NA	NA	NA	32834641	32876712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_32837434_32839810_32839913_32840883_32841016_32849384_32849462_32851146_32851307_32855910_32855992_32861132_32861262_32865888_32866072_32870221_32870483_32873992_32874063_32876518
93665	chr15	+	5149	6	FSM	ENSMUSG00000022412.15	ENSMUST00000023048.12	5148	6	-3	2	-3	-2	multi-exon	FALSE	canonical	3	146	junction_1	35.3361005205724	275	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGACGTGTCTATGTG	2750	False	NA	NA	False	NA	NA	NA	80118215	80137570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
93666	chr2	-	3291	24	NIC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-5	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_17	191.866949410242	981	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGACCTAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	127673790	127643044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
93668	chr5	+	5187	12	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	26	5663	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	128.305807215766	1	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGGGCCAAGAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	135398870	135411322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403920_135404128_135404340_135404408_135404553_135404729_135407028_135407487_135407611_135409772
93669	chr19	-	3340	15	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	8	-48	intron_retention	FALSE	non_canonical	0	0	junction_1	204.250009367272	3019	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTCCTTCCGGCCTGGCT	6048	False	NA	NA	False	NA	NA	NA	4251585	4242155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4242269_4242739_4242871_4243018_4243252_4243765_4243870_4244464_4244899_4244973_4246082_4246179_4246382_4247111_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
93671	chr9	-	1231	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	60	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6370.39613838888	5	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7160	False	NA	NA	False	NA	NA	NA	78388946	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78387217_78387431_78387522_78387714_78387810_78387971_78388920
93672	chr10	+	2622	11	NNC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_8	649.954736885577	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1621	False	NA	NA	False	NA	NA	NA	79690498	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698249_79698376_79698486_79698641_79699006
93674	chr1	+	1019	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-5	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8590.17096453848	21	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTGTCTCAAAGCCTG	NA	False	NA	NA	False	NA	NA	NA	86454442	86458419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686_86457937_86458123
93677	chr5	+	4259	11	FSM	ENSMUSG00000029283.18	ENSMUST00000117196.9	2864	11	5	-1400	5	1399	multi-exon	FALSE	canonical	3	29	junction_7	74.2377262582846	290	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCACTCTCCAGACAGTT	NA	False	NA	NA	False	NA	NA	NA	107112192	107133697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127160_107127311_107130829
93678	chr4	+	3450	6	Fusion	ENSMUSG00000082248.2_ENSMUSG00000078496.10	novel	1244	3	NA	NA	-57	2578	multi-exon	FALSE	non_canonical	0	0	junction_5	127.798904533646	9	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147527870	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147527997_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597082_147597752
93679	chr4	+	1693	3	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	10	12529	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_2	22	2	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCCAGACATTGGACGGT	NA	False	NA	NA	False	NA	NA	NA	146093403	146108026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146106571
93680	chr13	-	2727	4	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7483	969	at_least_one_novel_splicesite	FALSE	canonical	3	150	junction_1	38.262252939418	5	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGACATAAAAGAACACATAA	NA	False	NA	NA	False	NA	NA	NA	66828876	66817022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66819455_66821007_66821069_66821267_66821395_66828769
93681	chr17	-	4060	10	FSM	ENSMUSG00000023953.10	ENSMUST00000233438.2	2130	10	6	-1936	6	1066	multi-exon	FALSE	canonical	2	4	junction_7	6.99382443638054	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTAAAAAACAAAAAGTGCAC	7152	False	NA	NA	False	NA	NA	NA	46513542	46481214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46509559_46509695_46510317_46510461_46513322
93682	chr16	+	1613	12	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	643.638109910317	2	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	6055	False	NA	NA	False	NA	NA	NA	22926509	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931186_22932277
93683	chr1	+	3346	10	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-31	-247	intron_retention	FALSE	canonical	3	11	junction_4	216.261672774237	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGCTGTGTTTTTCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	167177773	167195854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183765_167184098_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
93684	chr13	+	5158	2	Intergenic	novelGene_1546	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	160	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATACATACACACATGC	NA	False	NA	NA	False	NA	NA	NA	113855095	113860496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113858582_113858824
93685	chr6	+	1786	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	46	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1916.27573368239	391	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684572	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122690204_122690576
93687	chrM	+	459	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	478	20	478	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTACCACCATACATATAG	52	False	NA	10	True	NA	NA	NA	3228	3687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3200_3700
93688	chrM	-	1613	1	Antisense	novelGene_ENSMUSG00000064357.1_AS_novelGene_ENSMUSG00000064356.1_AS_novelGene_ENSMUSG00000064358.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	6810	False	NA	NA	False	NA	NA	NA	9378	7765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_7800_9400
93689	chr2	-	3128	26	NNC	ENSMUSG00000061136.17	novel	7374	26	NA	NA	0	157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	206.209431404095	3	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGATTCTGTATCAAGAAT	NA	False	NA	NA	False	NA	NA	NA	53081216	53029026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53066374_53066429_53067364_53067446_53078459_53078540_53079980_53080113_53081034
93691	chr2	-	3232	23	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	8	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	227.367180372946	2	82	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATATGATATACCCATGTG	NA	False	NA	NA	False	NA	NA	NA	127673771	127643056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663870_127663915_127665878_127666002_127669220_127669418_127671357_127671497_127671597_127671658_127673639
93692	chr7	+	1258	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-19	-7	-19	7	mono-exon	FALSE	NA	NA	NA	NA	NA	178	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396375	51397633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
93693	chr8	-	3027	1	Antisense	novelGene_ENSMUSG00000071796.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	94	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTATCTTGTTCTAGTT	NA	False	NA	NA	False	NA	NA	NA	20172411	20169384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20169400_20172400
93694	chr15	+	3388	20	NNC	ENSMUSG00000022369.14	novel	3144	22	NA	NA	-23314	-20048	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	84.3143110455836	19	24	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATACAGTCTTTTAAAATA	NA	False	NA	NA	False	NA	NA	NA	55397489	55454161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55397734_55402425_55402547_55403517_55403606_55406719_55406781_55411537_55411636_55418719_55418840_55420653_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55453296
93695	chr2	+	5537	18	NIC	ENSMUSG00000043535.14	novel	10970	26	NA	NA	-8796	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_14	81.0140745600208	206	31	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGGTTAGAAGTACTCC	NA	False	NA	NA	False	NA	NA	NA	29038431	29072483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048278_29048852_29049010_29051483_29051586_29051761_29051878_29052989_29053062_29054413_29054564_29056279_29056388_29061174_29061363_29062327_29062421_29063568_29063734_29064330_29064496_29066888_29066988_29067526_29067615_29069411
93696	chr1	+	3344	11	Antisense	novelGene_ENSMUSG00000022995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	32	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCGCTGCCGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	181730522	181751264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_181731965_181732573_181733463_181733951_181734015_181735865_181735944_181740873_181740940_181744766_181744812_181745821_181745880_181746001_181746149_181746888_181747193_181749221_181749337_181751127
93697	chrM	-	490	1	Antisense	novelGene_ENSMUSG00000064371.1_AS_novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTATCTGCATCTGAG	899	False	NA	59	True	NA	NA	NA	15289	14799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14800_15300
93698	chr7	+	5261	4	Antisense	novelGene_ENSMUSG00000094462.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	31	49	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCGCCCGGAAGCACCCG	NA	False	NA	NA	False	NA	NA	NA	42116687	42241974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_42116879_42178037_42182861_42183058_42183191_42241859
93699	chr4	+	2871	5	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-15	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	46.916814683011	2	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147576858	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147641551_147641685_147661481_147661587_147665698_147665826_147667290
93700	chr8	+	3450	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	-37	-760	11	9	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	4049	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTTTGCTTCTTACT	NA	False	NA	NA	False	NA	NA	NA	75836214	75855076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
93701	chrX	+	1588	2	Genic_Genomic	ENSMUSG00000081205.5	novel	1068	1	NA	NA	-43	516	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTAAAGTTAACTGTAAAGA	NA	False	NA	NA	False	NA	NA	NA	79500304	79501931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_79501027_79501065
93702	chr9	+	3811	15	ISM	ENSMUSG00000032512.8	ENSMUST00000217472.2	2997	16	0	-12	0	-3	intron_retention	FALSE	canonical	3	238	junction_12	22.0232947172779	4	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTTTCTATCCCAAA	NA	False	NA	NA	False	NA	NA	NA	119723960	119751036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714
93703	SIRV10003	+	9956	1	FSM	SIRV10003A	SIRV10003	9970	1	0	14	0	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	388	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAAGAACGTGT	NA	False	NA	NA	False	NA	NA	NA	0	9956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV10003_+_0_10000
93704	chr3	-	1588	6	NIC	ENSMUSG00000064068.16	novel	775	7	NA	NA	7	-17	intron_retention	FALSE	canonical	3	739	junction_1	44.7007829909052	5	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATAAACCTGTTTACACT	NA	False	NA	NA	False	NA	NA	NA	89121207	89116415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89116729_89116811_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
93705	chr4	+	3753	8	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	6	41585	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	151.897253135809	7	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATTATGTCCATCCGCT	NA	False	NA	NA	False	NA	NA	NA	146206906	146256589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146240246_146240316_146250678_146250737_146251579_146251707_146253158_146253937_146254188
93706	chr13	+	3346	6	NNC	ENSMUSG00000095909.3	novel	449	3	NA	NA	-4633	1321	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	101.268751350059	19	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66256660	66271971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66256769_66258081_66258269_66267450_66267578_66267777_66267839_66269026_66269233_66269314
93707	chr1	+	3132	3	Genic_Genomic	ENSMUSG00000026380.11	novel	9269	15	NA	NA	38500	-4311	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCATGCTTGGATAGAGA	NA	False	NA	NA	False	NA	NA	NA	118594175	118608587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_118594183_118594635_118594782_118605608
93708	chr12	-	2774	5	NNC	ENSMUSG00000073164.12	novel	1004	3	NA	NA	8575	2121	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.09670269933013	163	39	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGTACACACACAAACACACA	NA	False	NA	NA	False	NA	NA	NA	23051424	23007556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_23008337_23008556_23010256_23042788_23042850_23043051_23043179_23051317
93709	chr12	-	1810	4	NNC	ENSMUSG00000079036.11	novel	1883	6	NA	NA	742	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_3	115.494107593803	57	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	87484587	87474846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87476041_87478169_87478309_87480888_87480980_87484201
93710	chr4	-	5920	8	Intergenic	novelGene_1808	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	68	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGCAAGATTTTATTGAAA	NA	False	NA	NA	False	NA	NA	NA	21213822	20804521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_20806026_20868818_20869949_20917111_20917918_20944502_20944914_21104037_21104236_21179329_21179391_21211970_21213271_21213312
93711	chr17	+	1179	1	Intergenic	novelGene_171	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	302	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTCCTCCCCTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155100
93712	chr15	+	6087	24	NNC	ENSMUSG00000022272.18	novel	748	4	NA	NA	-39	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	207.96649795631	7	114	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTTTGCTTTCCTTGAG	25	False	NA	NA	False	NA	NA	NA	25758811	25813756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_25759238_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142_25807264_25807821_25808275_25810444_25810637_25812206_25812866_25812912
93713	chr12	-	1432	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	2	-17	-2	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	843	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
93714	chr16	-	564	1	Intergenic	novelGene_3755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
93715	chr3	+	1557	1	FSM	ENSMUSG00000104616.2	ENSMUST00000196501.2	463	1	-872	-222	-872	222	mono-exon	FALSE	NA	NA	NA	NA	NA	58	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTTTACAGAGTCAAGTA	NA	False	NA	NA	False	NA	NA	NA	41439295	41440852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41439300_41440900
93716	chr13	+	2183	6	NIC	ENSMUSG00000074867.5	novel	700	6	NA	NA	-18306	487	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	12.7593103261893	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCTTATGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	62349063	62384445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_62349200_62351245_62351373_62351567_62351629_62381070_62381198_62381382_62381444_62382774
93717	chr9	+	4617	16	FSM	ENSMUSG00000032235.16	ENSMUST00000034761.15	4169	16	17	-465	0	465	multi-exon	FALSE	canonical	3	101	junction_3	13.7737270030865	163	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATCTTTTTTTAAAAAAA	4669	False	NA	NA	False	NA	NA	NA	69305204	69340869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_69305336_69306227_69306370_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
93718	chr11	-	2740	13	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	46	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	328.139536715032	5	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACACTCCTCATATTATTT	NA	False	NA	NA	False	NA	NA	NA	60702045	60678932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60679900_60679968_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
93719	chr7	-	6589	6	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-51	334	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_5	56.2259726461001	236	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATATATTGAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	27713591	27683944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711922_27713445
93720	chr5	-	1088	1	FSM	ENSMUSG00000094708.2	ENSMUST00000180167.2	1002	1	24	-110	24	110	mono-exon	FALSE	NA	NA	NA	NA	NA	15	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATAACAGGAGGGGCCTA	NA	False	NA	NA	False	NA	NA	NA	106011544	106010456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_106010500_106011500
93721	chr12	-	2287	13	NIC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	-6	-1822	combination_of_known_junctions	FALSE	canonical	2	8	junction_9	93.236110076634	7	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTGTCTAGGTCTAT	NA	False	NA	NA	False	NA	NA	NA	55349789	55327597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55345195_55345301_55345678_55345807_55349378_55349581_55349699
93722	chr11	+	5152	21	FSM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	6	-751	0	-4	multi-exon	TRUE	canonical	3	113	junction_18	14.0538251020852	156	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTTGTTTGTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	50022228	50063608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
93723	chr9	+	733	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-199	-44	199	mono-exon	FALSE	NA	NA	NA	NA	NA	115	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96777666	96778399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
93724	chr5	+	1952	6	NIC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-1	49	intron_retention	FALSE	canonical	3	24	junction_5	33.3610551391889	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGATCTGATTTATGG	3416	False	NA	NA	False	NA	NA	NA	134961225	134970626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
93725	chr16	-	4258	6	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	797	6185	intron_retention	FALSE	non_canonical	0	0	junction_1	0	19	37	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGCGGACGGCGCCGCCC	NA	False	NA	-31	True	NA	NA	NA	22932697	22926507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22926568_22927334_22927382_22927466_22929472_22929873_22930342_22930565_22930645_22931098
93726	chr7	-	1406	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	105	0	-8	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	9	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126398321	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
93727	chr1	+	3263	8	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	69.1764971294589	8	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	NA	False	NA	NA	NA	82294343	82423087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583_82421317_82421518
93728	chr3	-	7385	10	Fusion	ENSMUSG00000019338.14_ENSMUSG00000086288.2	novel	4632	9	NA	NA	-11	2577	intron_retention	FALSE	canonical	3	35	junction_9	37.0118432830611	185	73	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAAGGCTGAGGACGGT	NA	False	NA	NA	False	NA	NA	NA	94922726	94911323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922630
93729	chrX	+	3482	26	NNC	ENSMUSG00000001924.16	novel	830	6	NA	NA	84	434	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	691.063065139499	30	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTCTCACCGCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	20525749	20548878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20525929_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
93731	chr12	+	5522	19	NNC	ENSMUSG00000035597.20	novel	3457	15	NA	NA	2	10561	intron_retention	FALSE	non_canonical	0	0	junction_14	174.63511342083	23	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	7510	False	NA	NA	False	NA	NA	NA	65083109	65120721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_65083243_65089234_65089582_65090005_65090652_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197_65110550_65112510_65112577_65113413_65113550_65115773_65115886_65116726_65116827_65120588
93732	chr2	+	8011	7	Intergenic	novelGene_2730	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	77	56	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTCTCTCTCTTGCTT	NA	False	NA	NA	False	NA	NA	NA	150952644	151182889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_150952984_150953078_150953863_150954458_150956357_151025141_151025884_151176104_151176425_151176590_151177331_151179701
93734	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
93735	chr1	-	3627	24	NNC	ENSMUSG00000026516.9	novel	9392	23	NA	NA	9	458	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	145.114178368983	633	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACACCTTTCTGATAGAC	NA	False	NA	NA	False	NA	NA	NA	180971760	180920365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962477_180962569_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
93736	chr1	-	653	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	25	0	25	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	24653707	24653054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653700
93737	chr10	-	1693	7	NIC	ENSMUSG00000034620.18	novel	1546	7	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_5	138.233799533013	416	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	NA	False	NA	NA	NA	121933075	121917164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932133_121932252_121932367_121932804
93738	chr12	-	3162	2	Antisense	novelGene_ENSMUSG00000113300.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGCATGCATGCAGATTC	NA	False	NA	NA	False	NA	NA	NA	19613586	19603482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_19606058_19612999
93739	chr6	-	1925	11	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	47	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3424.16754262989	246	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	7	True	NA	NA	False	NA	NA	NA	7693207	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678043_7680084_7680212_7681249_7681444_7682263_7682457_7685168_7685407_7689251_7689524_7693108
93740	chr17	-	1928	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	45	1248	mono-exon	FALSE	NA	NA	NA	NA	NA	7	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGTAATTTGCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	40159673	40157745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157700_40159700
93741	chr4	+	4332	3	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14321	2914	multi-exon	FALSE	non_canonical	0	0	junction_2	29.5	332	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	145158988	145180372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036_145176318_145176484
93742	chr7	-	1228	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	71	212	-13	-210	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTCATCTCTAACCATGC	NA	False	NA	NA	False	NA	NA	NA	126398355	126394617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
93743	chr1	+	2894	2	Antisense	novelGene_ENSMUSG00000022995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	187	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTGCTACAACAGGGAAG	NA	False	NA	NA	False	NA	NA	NA	181730508	181733456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_181731961_181732014
93745	chr18	-	8846	47	Fusion	ENSMUSG00000024370.18_ENSMUSG00000003778.15	novel	4468	22	NA	NA	0	5	intron_retention	FALSE	non_canonical	0	0	junction_7	461.313289263014	1	83	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTATATATAACAATCAG	NA	False	NA	NA	False	NA	NA	NA	34784771	34732906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738745_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741637_34742902_34743003_34743462_34743682_34744184_34744315_34757590_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767574_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
93746	chr7	-	9749	7	Intergenic	novelGene_2878	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3789	192	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGAGGGAAATGCTGAG	NA	False	NA	NA	False	NA	NA	NA	7814015	7799905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_7802601_7803195_7803998_7804162_7806023_7808830_7811771_7812365_7812834_7812881_7813247_7813396
93747	chr2	+	4160	5	ISM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	6484	-340	6484	340	intron_retention	FALSE	canonical	3	322	junction_2	13.2098448136229	8	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTTTGTGAGGATGTCT	NA	False	NA	NA	False	NA	NA	NA	76206811	76214452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708
93748	chr13	-	1739	7	NNC	ENSMUSG00000021546.19	novel	2585	12	NA	NA	75	1	intron_retention	FALSE	non_canonical	0	0	junction_1	3121.41616720502	4	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	NA	False	NA	NA	False	NA	NA	NA	58542435	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540058_58540192_58540231_58541009_58541180_58541505_58541683_58541824_58541974_58542123_58542179_58542291
93749	chr11	-	2720	3	Intergenic	novelGene_2545	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	94	194	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGTCTTGCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	121816174	121795182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121797657_121799014_121799142_121816055
93750	chr4	+	3344	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-14	-1901	multi-exon	FALSE	non_canonical	0	0	junction_2	37.9148676653717	4	69	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206886	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146207051_146207223_146207708_146207846_146291416_146291510_146293441_146293573_146368115_146368239_146384279_146384431_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393458_146552638
93751	chr15	-	6703	18	FSM	ENSMUSG00000033075.18	ENSMUST00000044189.16	6575	18	208	-336	33	336	multi-exon	FALSE	canonical	3	84	junction_17	35.6797559226372	139	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTTCTGGTGTTTTTT	6176	False	NA	NA	False	NA	NA	NA	97991417	97936288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
93752	chr5	-	5322	16	FSM	ENSMUSG00000029207.17	ENSMUST00000159786.8	6333	16	-159	1170	-38	651	multi-exon	FALSE	canonical	3	66	junction_15	15.1314242555022	152	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTTTATATCCGTGGTT	NA	False	NA	NA	False	NA	NA	NA	66776165	66457352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
93753	chr2	-	4510	3	Antisense	novelGene_ENSMUSG00000080888.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGAAGGAAGTCGCTGG	NA	False	NA	NA	False	NA	NA	NA	174934111	174919725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_174919908_174928630_174928691_174929843
93754	chr4	+	4228	6	Antisense	novelGene_ENSMUSG00000093594.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCAAAGCCTCCACAATG	7926	False	NA	NA	False	NA	NA	NA	147876789	147887721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147876799_147876994_147877608_147877696_147878378_147878588_147880877_147887036_147887561_147887608
93755	chr5	-	2092	17	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTATTGTGCTTTACCT	NA	False	NA	NA	False	NA	NA	NA	75815153	75776014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75776151_75781503_75781695_75783646_75783765_75797953_75798067_75799622_75799817_75801150_75801257_75801355_75801485_75801768_75801875_75801986_75802096_75806493_75806644_75808404_75808492_75809041_75809173_75810204_75810330_75813209_75813317_75813412_75813517_75813879_75813986_75815073
93756	chr7	+	2145	11	Antisense	novelGene_ENSMUSG00000030521.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	517	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGCGAGCCGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	64026327	64041966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_64026552_64026914_64027143_64028484_64028594_64030677_64030789_64032638_64032776_64034048_64034118_64035426_64035569_64037196_64037365_64038612_64038772_64039194_64039880_64041853
93757	chr18	-	4519	14	Genic_Genomic	ENSMUSG00000117505.2	novel	1096	1	NA	NA	-59401	-832	multi-exon	FALSE	non_canonical	0	0	junction_1	0	259	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCGGCGGGAGCTGCGCG	NA	False	NA	NA	False	NA	NA	NA	7928514	7868849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_7869090_7869988_7870026_7871546_7871743_7901490_7901603_7905399_7905514_7905929_7906043_7910513_7910822_7916049_7916295_7917549_7917674_7918430_7918580_7920129_7920249_7921419_7921607_7921853_7921982_7926067
93758	chr1	-	5429	26	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	-22120	-1990	combination_of_known_junctions	TRUE	canonical	3	42	junction_19	13.5294641431211	63	47	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATTTCTATTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	135460309	135368575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086
93759	chrM	-	1980	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTTTAAAATTGAACTT	77	True	NA	NA	False	NA	NA	NA	3466	1486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3500
93760	chr11	-	1685	6	NNC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	893.804989916704	4	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1875	False	NA	NA	False	NA	NA	NA	59119068	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59102635_59102721_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
93761	chrM	+	2525	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	7	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	4	True	NA	29	True	NA	NA	NA	1100	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2214_2298
93762	chr19	-	4744	9	Antisense	novelGene_ENSMUSG00000013663.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	243	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGAAGACGGATAATCCT	NA	False	NA	NA	False	NA	NA	NA	32800716	32735601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_32735924_32753414_32753496_32769944_32769994_32775470_32775513_32777258_32777498_32789093_32789237_32792814_32792982_32795233_32795459_32797240
93763	chr18	+	6390	33	NNC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	2	34307	intron_retention	FALSE	non_canonical	0	0	junction_15	395.01254801074	105	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGCACTTCCCACCGTGTC	-2	True	NA	NA	False	NA	NA	NA	9958164	10029796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320_9996249_9997172_9997281_9997716_9997775_10000494_10000623_10001769_10001864_10002367_10002434_10004895_10005015_10005633_10005716_10007766_10007850_10009953_10010083_10012212_10012269_10016534_10016645_10017990_10018098_10024505_10024682_10029640
93764	chr14	-	4474	15	NNC	ENSMUSG00000007589.10	novel	3130	8	NA	NA	0	2401	intron_retention	FALSE	non_canonical	0	0	junction_1	171.12013920289	367	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTCCGCTAATTGCAAAC	NA	False	NA	NA	False	NA	NA	NA	55919243	55909744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55909842_55910162_55910257_55910404_55910525_55912781_55912866_55913013_55913189_55914210_55914291_55914381_55915486_55915678_55916867_55916970_55917063_55917322_55917388_55917471_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
93765	chr10	+	5120	5	NNC	ENSMUSG00000112742.2	novel	415	3	NA	NA	-9	6283	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	25.4693443182191	117	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTCATACAGTGAGACTG	NA	False	NA	NA	False	NA	NA	NA	130378206	130413945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_130378320_130407161_130407289_130407478_130407540_130408627_130409350_130409848
93766	chr13	-	2905	6	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7338	967	intron_retention	FALSE	canonical	0	0	junction_3	32.3666495022268	194	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	1856	False	NA	NA	False	NA	NA	NA	66439303	66427982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66430404_66431569_66431631_66431830_66431958_66434416_66434506_66434587_66434665_66439173
93767	chr6	-	2815	2	Intergenic	novelGene_4121	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	153	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTGATGGCAAGGTAGCC	NA	False	NA	NA	False	NA	NA	NA	11829591	11822859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_11825437_11829353
93768	chr17	+	4780	18	NNC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	62.9965122338786	32	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATGAACTCTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	15261873	15284485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15281587
93769	chr11	+	5883	25	NNC	ENSMUSG00000085208.4	novel	4423	2	NA	NA	9334	46370	intron_retention	FALSE	non_canonical	0	0	junction_1	0	54	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAGAAGACGTCGGCGGC	NA	False	NA	NA	False	NA	NA	NA	86101542	86148388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_86103626_86103714_86103897_86105739_86105843_86105969_86106080_86106374_86106624_86108560_86108759_86112929_86113061_86115770_86115971_86117463_86117628_86120025_86120134_86122792_86122899_86123907_86124085_86125496_86125630_86127361_86127434_86129084_86129202_86129292_86129363_86133738_86133865_86135228_86135458_86139637_86139807_86140044_86140179_86141793_86141908_86143083_86143184_86146168_86146314_86146851_86147155_86148028
93770	chr4	+	5382	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	58	42989	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	84.2368090563739	87	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATCAACAAATGTAAAC	NA	False	NA	NA	False	NA	NA	NA	146206999	146257993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
93771	chrUn_MU069435v1	+	759	1	Intergenic	novelGene_4771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTCGCTCTCCTTGGG	NA	False	NA	NA	False	NA	NA	NA	1	760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_800
93772	chrM	+	1130	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	14	0	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	32	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATCCATGTCTTG	-2	True	NA	87	True	NA	NA	NA	14144	15274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
93774	chr17	+	7953	19	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	62	40815	intron_retention	FALSE	non_canonical	0	0	junction_5	2957.19561690915	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCAGCCGGGCGCGGAAAA	NA	False	NA	NA	False	NA	NA	NA	6697572	6744510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716178_6716313_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6744415
93776	chr8	+	501	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	-21	111	-21	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCGCAGGTCTAAGACCAA	7096	False	NA	NA	False	NA	NA	NA	19542930	19543431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_19542900_19543400
93777	chr7	+	5567	8	ISM	ENSMUSG00000107023.3	ENSMUST00000189629.5	12746	31	32156	3590	-8345	260	internal_fragment	FALSE	canonical	3	23	junction_5	31.7798549976785	5	111	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTAGTAGAATTCAGTT	NA	False	NA	NA	False	NA	NA	NA	127150911	127162636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_127151601_127151739_127151937_127152033_127152149_127152346_127152467_127156579_127156781_127156937_127157022_127157139_127160958_127162293
93778	chr19	-	1358	5	NNC	ENSMUSG00000024767.12	novel	1713	7	NA	NA	-39	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	527.323607948667	320	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCTGCCTCTGCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	7183638	7175577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_7176605_7176736_7176835_7181422_7181522_7181754_7181817_7183566
93779	chr3	+	3206	6	NNC	ENSMUSG00000001418.14	novel	4219	6	NA	NA	-7	16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	506.870792214347	171	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATTGATGACTTCAAATC	4020	False	NA	NA	False	NA	NA	NA	88232354	88238636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88232509_88232983_88233239_88233421_88233620_88235163_88235421_88235509_88236266_88237050
93780	chr5	-	3238	11	NIC	ENSMUSG00000029512.12	novel	5213	28	NA	NA	1021	-9	combination_of_known_splicesites	FALSE	canonical	2	7	junction_8	347.96241176311	1	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTATTTATGTGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	110939037	110932362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110938077_110938347_110938715_110938803_110938917
93781	chr16	-	3890	17	NIC	ENSMUSG00000022789.16	novel	3951	18	NA	NA	-4	-2	combination_of_known_junctions	FALSE	canonical	3	157	junction_15	355.287537601588	9	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATTGCCAGTAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	16176827	16130111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16163861_16164010_16176627
93782	chr5	-	2056	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	3	-13	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	8	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACACAAACAGCTTGTG	8924	False	NA	NA	False	NA	NA	NA	142892474	142888882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890596_142890865_142891232_142891318_142891448_142892406
93783	chr19	+	6508	8	Fusion	ENSMUSG00000064105.14_ENSMUSG00000117814.2	novel	4955	8	NA	NA	-46149	-8	multi-exon	FALSE	canonical	0	0	junction_3	43.6507474747231	179	23	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTTAGCAGCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	46807949	46871870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_46808062_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
93784	chr17	-	3470	5	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	4469	1160	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	770.555440899615	47	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGACTTAACTTGGTCATG	9295	False	NA	NA	False	NA	NA	NA	25175141	25160283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25162760_25163000_25163653_25164553_25164603_25167611_25167755_25174991
93785	chr15	+	618	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	11	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5436.67978089569	7	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788288	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788298_76788738_76788881_76789017_76789143_76789196_76789237_76790055_76790172_76790320
93786	chrX	-	8401	12	FSM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	-19	8	-19	-8	multi-exon	FALSE	canonical	3	32	junction_11	7.74596669241483	105	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTTGATTCAAGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	7054972	7020056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7054770
93787	chr6	-	2742	5	NNC	ENSMUSG00000029840.9	novel	3960	4	NA	NA	2	-1042	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	333.387443524797	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAACAAAAAAAAAACTAGG	4239	False	NA	NA	False	NA	NA	NA	35516732	35486882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473_35516563_35516647
93788	chr11	+	1117	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17708.5	11	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATATATGGTGTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	62442329	62444034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443910_62443953
93789	chr5	+	944	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	52	274	12	1	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	217	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342595	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
93791	chr13	-	6574	24	Intergenic	novelGene_1377	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	3	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCTTCGGTGATTTGGA	NA	False	NA	NA	False	NA	NA	NA	55460668	55357594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55357687_55361014_55361130_55361872_55361964_55381707_55381842_55386500_55386672_55393326_55395889_55408154_55408280_55409354_55409625_55411142_55411254_55416258_55416335_55424333_55424453_55425342_55425487_55430469_55430593_55437864_55438067_55438941_55439122_55441368_55441522_55443790_55444004_55446374_55446488_55447501_55447772_55449537_55449657_55450651_55450790_55454744_55454854_55458147_55458352_55459928
93792	chr6	+	4526	2	FSM	ENSMUSG00000003031.15	ENSMUST00000067327.11	4552	2	32	-6	32	6	multi-exon	FALSE	canonical	3	5	junction_1	0	194	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGCAACTGTCCTGTGCT	NA	False	NA	NA	False	NA	NA	NA	134897395	134902482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_134898358_134898918
93793	chr10	-	4573	23	Antisense	novelGene_ENSMUSG00000040054.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	86	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTGGCCAAAGGGTAGA	NA	False	NA	NA	False	NA	NA	NA	127960269	127932246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127932391_127944760_127944901_127946623_127947216_127948535_127948632_127949326_127949549_127950200_127950652_127950892_127950954_127951928_127952037_127952172_127952280_127952417_127952625_127954421_127954523_127954821_127954888_127955136_127955366_127955488_127955746_127956977_127957195_127957459_127957533_127957666_127957848_127957934_127957995_127958170_127958317_127958889_127959525_127959600_127959855_127959971_127960129_127960200
93794	chr5	+	1255	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-181	-72	181	mono-exon	FALSE	NA	NA	NA	NA	NA	28	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96009500	96010755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
93795	chr13	-	3220	9	Fusion	ENSMUSG00000091347.3_ENSMUSG00000114027.2	novel	2349	5	NA	NA	-35925	1488	multi-exon	FALSE	canonical	0	0	junction_3	35.9876280824397	2	47	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	1881	False	NA	NA	False	NA	NA	NA	66439278	66373644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66375998_66384209_66384271_66384471_66384599_66399135_66399260_66400346_66400405_66401557_66401730_66403192_66403335_66408737_66408816_66439173
93796	chr2	-	4384	3	ISM	ENSMUSG00000078903.11	ENSMUST00000165892.8	1665	4	5188	-2782	5188	-1067	3prime_fragment	FALSE	canonical	3	35	junction_1	106	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTGCTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	175039666	175033924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_175038181_175039337_175039399_175039599
93797	chr4	+	3192	5	NIC	ENSMUSG00000078503.10	novel	597	5	NA	NA	-23	93	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	211.475028076603	1108	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATGAATATTTTTGCAAA	871	False	NA	NA	False	NA	NA	NA	145237305	145265851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_145237496_145247375_145247456_145257381_145257486_145261385_145261513_145263160
93799	chr10	+	6502	11	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATCTCTTGGCTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	62647554	62715251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649596_62650206_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62713928
93801	chr6	+	6098	6	NIC	ENSMUSG00000032712.17	novel	5356	6	NA	NA	1	-8	combination_of_known_junctions	TRUE	canonical	3	39	junction_3	89.6852273231216	224	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGAACTACAGTTTAAG	NA	False	NA	NA	False	NA	NA	NA	149210954	149237148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_149211403_149211819_149211876_149219132_149219207_149226902_149231283_149232923_149233005_149236089
93802	chrM	+	886	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	257	1	257	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	283	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	105	False	NA	134	True	NA	NA	NA	14401	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
93803	chr17	-	4210	8	NNC	ENSMUSG00000023935.11	novel	1160	8	NA	NA	1600	-11	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	8.51409395757219	55	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCTTAAAGAATGTTTT	NA	False	NA	NA	False	NA	NA	NA	45784152	45756816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45784008
93804	chr16	+	5525	29	Antisense	novelGene_ENSMUSG00000022822.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	39	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGCGAACATCGGACCCTG	8959	False	NA	NA	False	NA	NA	NA	20150059	20245041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_20151454_20152333_20152501_20153855_20153970_20157625_20157724_20163391_20163542_20180931_20181022_20182724_20182914_20184356_20184483_20184561_20184717_20186791_20186921_20187172_20187321_20187775_20187960_20190868_20190970_20193740_20193885_20195260_20195465_20197196_20197266_20197386_20197517_20208118_20208189_20211195_20211558_20214764_20214872_20215728_20215879_20217562_20217711_20218224_20218401_20218557_20218789_20223314_20223464_20224138_20224294_20224475_20224637_20241055_20241236_20244997
93805	chr17	+	2452	6	ISM	ENSMUSG00000041130.11	ENSMUST00000234988.2	3285	9	1465	-118	1465	-6	intron_retention	FALSE	canonical	3	262	junction_5	120.640623340565	387	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCACATAGCTGGTGTTC	962	False	NA	NA	False	NA	NA	NA	24897580	24900984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24897688_24898010_24898199_24898294_24898380_24898482_24899250_24899597_24899773_24899854
93807	chrX	+	2310	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-50	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1047.41860927499	2	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATTTTCTGTGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	100473290	100492193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491712_100491829
93808	chr18	+	1715	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	30	2	30	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48179743	48181458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
93809	chr2	+	3142	5	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	4	3236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.0746772020624	1	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACATTAAATGCCTCATG	NA	False	NA	NA	False	NA	NA	NA	150023678	150038435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775_150035244_150037061
93810	chr1	-	5634	32	NIC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	-5146	-5	combination_of_known_junctions	FALSE	canonical	3	95	junction_7	502.398190410124	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTCCATGATGTGGACG	NA	False	NA	NA	False	NA	NA	NA	71668649	71624689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636547_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474
93811	chr9	+	2413	5	NIC	ENSMUSG00000032518.7	novel	1101	7	NA	NA	-2	7	intron_retention	FALSE	canonical	3	3720	junction_1	827.330194057971	3	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTCACTGCAGACTGTAC	NA	False	NA	NA	False	NA	NA	NA	119956852	119960632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119956897_119957522_119959430_119959833_119959963_119960065_119960232_119960465
93812	chr16	-	3303	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	75	211	75	2	multi-exon	FALSE	canonical	3	1276	junction_6	130.715909088714	705	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAATACTTGGTTTAAAAT	NA	False	NA	NA	False	NA	NA	NA	15455189	15441971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
93813	chr4	+	3992	6	NNC	ENSMUSG00000028527.19	novel	4186	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	109.8788423674	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	NA	False	NA	NA	NA	101276929	101324192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749_101321048_101321143
93816	chr14	+	1707	10	NIC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	22	0	combination_of_known_splicesites	FALSE	canonical	2	28	junction_1	727.515406480623	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	NA	False	NA	NA	NA	21881360	21895947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21881513_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
93817	chr11	-	1377	6	NNC	ENSMUSG00000020935.9	novel	1744	5	NA	NA	44	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458.799040975458	48	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8237	False	NA	NA	False	NA	NA	NA	102907950	102884872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102885182_102885504_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
93818	chr15	-	1518	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	107	0	at_least_one_novel_splicesite	FALSE	canonical	3	93	junction_12	740.976434435596	21	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2863	False	NA	NA	False	NA	NA	NA	43145915	43113453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145786
93819	chr14	-	2500	15	NNC	ENSMUSG00000022099.18	novel	5418	16	NA	NA	99	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	77.6819785788079	18	27	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	NA	False	NA	NA	NA	70873319	70841109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70842295_70842407_70842489_70842736_70842809_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853512_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70873259
93820	chr7	+	3521	3	Antisense	novelGene_ENSMUSG00000048787.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAGCTGTTAACGATTAC	NA	False	NA	NA	False	NA	NA	NA	119454364	119494363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_119457282_119458604_119459137_119494291
93821	chr13	-	3917	7	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113450.2_ENSMUSG00000074865.12	novel	2310	4	NA	NA	15	712	multi-exon	TRUE	non_canonical	0	0	junction_4	29.1971269515037	180	43	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTAGTCACCCCACATG	NA	False	NA	NA	False	NA	NA	NA	62706394	62515429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893_62531519_62592308_62592447_62614384_62614563_62706342
93822	chr4	+	4656	10	NIC	ENSMUSG00000066037.15	novel	2683	11	NA	NA	1	-5	intron_retention	FALSE	canonical	3	160	junction_1	136.525491672959	574	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCACCTATTTCAAATTCA	NA	False	NA	NA	False	NA	NA	NA	136038253	136067987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_136038401_136041400_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
93823	chr17	+	2058	1	Intergenic	novelGene_214	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGGTTTGGAGGGCGT	NA	False	NA	NA	False	NA	NA	NA	40153888	40155946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
93824	chr18	+	9558	16	NNC	ENSMUSG00000005871.16	novel	12811	16	NA	NA	13329	-2629	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_10	15.160768083738	223	19	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTGACACTTAACCATTC	NA	False	NA	NA	False	NA	NA	NA	34394079	34452613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_34394211_34401350_34401433_34402108_34402308_34405491_34405601_34409616_34409731_34412321_34412406_34422890_34422996_34429083_34429183_34431475_34431855_34433018_34433115_34434314_34434369_34437635_34437776_34438618_34438697_34439315_34439433_34443745_34443961_34445057
93825	chr18	-	5829	37	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	0	34894	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.408216745037	47	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCACTGCGGCGCCCAGTG	-60	True	NA	NA	False	NA	NA	NA	10030141	9958171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9958246_9959096_9959170_9959252_9959316_9960485_9960553_9962372_9962492_9963262_9963311_9963821_9963917_9968748_9968832_9970252_9970328_9975597_9975706_9977844_9977977_9984431_9984533_9986286_9986354_9986550_9986602_9986688_9986760_9987067_9987166_9987598_9987662_9989687_9989775_9992127_9992276_9992831_9992908_9993320_9995730_9996070_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
93826	chr11	-	2689	13	Antisense	novelGene_ENSMUSG00000020459.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2997	23	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCGTTGTGAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	29495444	29476623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_29476842_29479926_29480153_29480578_29480775_29483222_29483396_29485087_29485265_29486830_29486962_29488661_29488791_29490066_29490271_29490606_29490860_29491338_29491481_29492343_29492517_29494275_29494410_29494911
93827	chr7	-	1171	3	NIC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	-2	intron_retention	FALSE	canonical	3	69387	junction_1	2507	9	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTGGTGTTTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	45109263	45107370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45108085_45108507_45108655_45108953
93828	chrX	-	5013	14	ISM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	75	53824	14	-2	5prime_fragment	FALSE	canonical	3	37	junction_13	60.9118093698591	39	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCTGATTGTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	104972934	104895044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972705
93829	chr1	-	1333	9	NNC	ENSMUSG00000004364.15	novel	2442	15	NA	NA	-4049	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	210.577628203948	1	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTCTTCAGTGTTGATGT	NA	False	NA	NA	False	NA	NA	NA	80259207	80244532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254164_80254208_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099
93830	chr17	-	1854	8	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	470	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3756.49965162424	3	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45882038	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878908_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943
93831	chr1	+	3255	8	NNC	ENSMUSG00000026142.16	novel	3636	7	NA	NA	-55	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	69.1764971294589	2	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATCAGTGTGTTGCTCG	NA	False	NA	NA	False	NA	NA	NA	82294307	82423082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583_82422649_82422889
93832	chrM	+	2148	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-324	0	324	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTAAATAAATTAAAAAAACT	-4	True	NA	4	True	NA	NA	NA	11741	13889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13900
93833	chr17	+	2862	5	NNC	ENSMUSG00000096910.3	novel	5788	4	NA	NA	11	412	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	38.8031893019118	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAATGTGAATGCATTT	NA	False	NA	NA	False	NA	NA	NA	33508528	33523553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738_33521750_33522002
93834	chr3	-	1640	8	Antisense	novelGene_ENSMUSG00000068744.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1046	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAAGGGCTCCCGAGGGG	NA	False	NA	NA	False	NA	NA	NA	108295485	108291159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_108291210_108291549_108291601_108291688_108291745_108292282_108292723_108293606_108293722_108293813_108294051_108294591_108294718_108294920
93835	chr9	+	4860	8	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	229	junction_6	142.420762072767	55	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	9118	False	NA	NA	False	NA	NA	NA	15217555	15228274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15226428_15226678
93836	chr2	-	3381	5	NNC	ENSMUSG00000074731.4	novel	2734	4	NA	NA	-24	4106	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.972892172189	1	48	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTGGAAGTATCCCACCA	NA	False	NA	NA	False	NA	NA	NA	150327035	150308804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_150310326_150313808_150315345_150316415_150316477_150316675_150316803_150326899
93837	chrX	+	4369	2	Intergenic	novelGene_3955	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	15	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTGAAAAATCTGGTGTA	NA	False	NA	NA	False	NA	NA	NA	72212423	72348427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_72215530_72347164
93838	chr3	+	4544	13	NNC	ENSMUSG00000078684.9	novel	6190	19	NA	NA	19	378	intron_retention	TRUE	non_canonical	0	0	junction_6	100.685532172646	6	36	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCTGCAAAACAAATCTTGG	NA	False	NA	NA	False	NA	NA	NA	88682541	88733272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88684822_88691614_88691807_88695643_88695746_88696664_88696706_88706921_88707026_88715213_88715413_88715862_88715950_88717975_88718145_88719320_88719466_88720990_88721142_88722938_88723056_88723316_88724165_88733163
93839	chr12	+	4985	20	NNC	ENSMUSG00000020661.16	novel	502	6	NA	NA	5097	1759	intron_retention	FALSE	canonical	0	0	junction_1	37.3915421428792	147	17	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAATTAAAATGG	7883	False	NA	NA	False	NA	NA	NA	3921287	3960306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3921423_3922834_3922879_3923281_3923429_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
93840	chr9	+	2690	11	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	69	junction_1	186.0248370514	99	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTTATAGTTTGTAT	9118	False	NA	NA	False	NA	NA	NA	15217555	15228271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15225561_15226397_15226428_15226678_15226737_15228184
93842	chr5	-	2832	14	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	2	3	intron_retention	FALSE	canonical	3	40	junction_13	182.874063434165	15	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGTTTGTGAGCCTCCC	1975	False	NA	NA	False	NA	NA	NA	138185465	138176886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185223
93843	chr5	+	1559	6	NIC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-22	2	intron_retention	FALSE	canonical	3	6763	junction_5	6890.1060833633	27	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAAGCCTGGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115697573	115701788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
93844	chr8	+	3086	5	NIC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	4	-17	intron_retention	FALSE	canonical	0	0	junction_1	593.619143475006	27	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTCACCCCACACCCTAC	NA	False	NA	NA	False	NA	NA	NA	70980400	70987959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_70980487_70982040_70982326_70983589_70985400_70986766_70986845_70987132
93845	chr7	+	3964	7	Antisense	novelGene_ENSMUSG00000030751.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTACGGTTCGGTGATCGT	NA	False	NA	NA	False	NA	NA	NA	113863719	113875291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_113866438_113868955_113869085_113869566_113870378_113873046_113873151_113873260_113873364_113873652_113873696_113875235
93846	chr14	+	959	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-101	-173	-1	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	8	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTCAAGAAGGTGGACTC	NA	False	NA	NA	False	NA	NA	NA	46321483	46322442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
93847	chr19	-	1667	11	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	4259	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1349.43975041496	10	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	8022	False	NA	NA	False	NA	NA	NA	7013076	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998489_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003677_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863
93848	chr11	-	8265	46	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	8368	-304	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_29	110.552917891483	8	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCATTTGTGACGTAAAGA	NA	False	NA	NA	False	NA	NA	NA	62320939	62207819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269336_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62320851
93849	chr9	+	2297	5	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	17	-364	intron_retention	FALSE	canonical	3	17440	junction_1	1485.07043183143	11	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCGCAGAGTCTTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	64080691	64085188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64080716_64082105_64082278_64082475_64083005_64083373_64084760_64085002
93850	chr16	+	1951	13	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	697.252161265126	2	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916_22932165_22932218
93851	chr17	+	6390	10	NNC	ENSMUSG00000038141.12	novel	1517	9	NA	NA	3182	9124	intron_retention	FALSE	non_canonical	0	0	junction_3	411.156213742132	9	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGCCAGGCC	NA	False	NA	NA	False	NA	NA	NA	6351059	6367713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643_6361221_6361568_6361646_6361983_6362107_6365190_6365232_6367643
93852	chr3	+	4200	17	FSM	ENSMUSG00000027959.15	ENSMUST00000198311.5	2404	17	-26	-1770	0	-87	multi-exon	FALSE	canonical	3	24	junction_15	13.4290671213603	123	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTGAGCGTTTTATATG	NA	False	NA	NA	False	NA	NA	NA	116388630	116424566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031_116415158_116420721_116420817_116422166_116422262_116422356
93853	chr11	-	343	4	ISM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	53	763	-2	-234	5prime_fragment	FALSE	canonical	3	11120	junction_3	1506.01999396496	5	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAACAATAAAGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	97673210	97669115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97669205_97672159_97672289_97672631_97672716_97673169
93854	chr15	-	6536	18	NNC	ENSMUSG00000033075.18	novel	6575	18	NA	NA	-4930	336	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_17	51.2685446235805	149	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTTCTGGTGTTTTTT	8148	False	NA	NA	False	NA	NA	NA	97996555	97936288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97996468
93855	chr4	-	4197	7	Antisense	novelGene_ENSMUSG00000070605.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	393	82	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCGCCGCCTTCTGGACCC	NA	False	NA	NA	False	NA	NA	NA	146553873	146500192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146500540_146502752_146502848_146508050_146508136_146533483_146533531_146547959_146548018_146548858_146548987_146550436
93856	chr5	-	5085	2	Antisense	novelGene_ENSMUSG00000060961.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	89356961	89351752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_89356596_89356719
93857	chr13	+	8327	7	Fusion	ENSMUSG00000116646.2_ENSMUSG00000113212.2	novel	560	3	NA	NA	231	-4123	multi-exon	TRUE	non_canonical	0	0	junction_1	0	114	233	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCGGCAGGAAGCCACCC	NA	False	NA	NA	False	NA	NA	NA	74588515	74642466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74596062_74596396_74596681_74598076_74598135_74598353_74598484_74599423_74599547_74641968_74642056_74642367
93858	chr11	-	3224	4	Intergenic	novelGene_2550	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	17.326921891156	110	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATTGTGACCTG	NA	False	NA	NA	False	NA	NA	NA	121847563	121832039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121834966_121836089_121836151_121836329_121836457_121847453
93859	chr5	+	5148	20	Antisense	novelGene_ENSMUSG00000041890.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	209	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCCCGCCTTCCAGCGC	2	True	NA	NA	False	NA	NA	NA	114865474	114911531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_114868455_114869052_114869119_114871255_114871441_114871919_114872004_114875407_114875499_114877093_114877343_114881791_114881942_114883489_114883635_114886246_114886356_114887302_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899728_114902406_114902537_114902646_114902735_114904512_114904619_114905156_114905270_114907677_114907815_114911377
93860	chr10	+	4037	11	NNC	ENSMUSG00000003068.18	novel	2566	10	NA	NA	-11	2043	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	28.0563718253091	180	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCCACAGGAGGCCCCAG	2636	False	NA	NA	False	NA	NA	NA	79951625	79968559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79951645_79952227_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79965738_79965946_79966089
93861	chr11	-	3568	2	Intergenic	novelGene_2329	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	88	junction_1	0	36	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGACCGTTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	57450923	57445637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57448978_57450695
93862	chr2	+	2388	19	NNC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-115	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	942.695964825757	8	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	NA	False	NA	NA	NA	157121230	157167977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_157121256_157124783_157124882_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157165142_157165191_157167630
93863	chr7	-	5383	11	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	155	3057	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	349.714869572342	1	129	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTGCCGTGGATAATTTG	NA	False	NA	NA	False	NA	NA	NA	132724740	132586234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683489_132683590_132724562
93864	chr12	+	5025	5	Antisense	novelGene_ENSMUSG00000113160.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTTTCCGTGTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	23748086	23923717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_23748360_23752806_23754758_23916492_23917036_23921414_23922241_23922285
93865	chr14	-	3453	21	Antisense	novelGene_ENSMUSG00000002325.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	269	14	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGTTCGGAGTGACGGT	NA	False	NA	NA	False	NA	NA	NA	55841125	55829159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_55829528_55829623_55829770_55829914_55830068_55830283_55830350_55830462_55830509_55831750_55831928_55832377_55832757_55832924_55833215_55833460_55833711_55833796_55833988_55834109_55834315_55836093_55836272_55836360_55836457_55836546_55836640_55838502_55838619_55838733_55838855_55839095_55839211_55839335_55839394_55840057_55840157_55840712_55840879_55840985
93866	chr3	+	3248	17	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	1	107	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	425.477631425848	2	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCATTCGGAAGACTTAAT	4857	False	NA	NA	False	NA	NA	NA	34074254	34124578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093262_34093388_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
93867	chr5	-	5633	32	FSM	ENSMUSG00000038095.16	ENSMUST00000065263.12	10071	32	-28	4466	15	1364	multi-exon	FALSE	canonical	3	24	junction_31	128.473127279141	6	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTAACGAAGTGGACTCTT	NA	False	NA	NA	False	NA	NA	NA	124564005	124511230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
93868	chr13	-	3035	3	Intergenic	novelGene_1311	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	8961865	8811993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_8814827_8961335_8961519_8961846
93869	chr18	+	3711	13	Antisense	novelGene_ENSMUSG00000024587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.38192699598142	20	43	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCACCTAGAGCAGCGGT	NA	False	NA	NA	False	NA	NA	NA	64632725	64649599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_64633723_64634373_64634504_64634812_64634946_64636577_64638114_64638219_64638449_64640841_64640932_64642316_64642386_64643522_64643601_64644679_64644771_64644851_64644949_64645054_64645120_64648395_64648483_64649490
93870	chr5	-	3560	12	NIC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	740	861	intron_retention	FALSE	canonical	3	1363	junction_7	85.4542553186564	508	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAGTCATCAATAAATTC	NA	False	NA	NA	False	NA	NA	NA	24781725	24769481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516
93871	chr11	-	1181	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	1	-180	1	180	mono-exon	FALSE	NA	NA	NA	NA	NA	7	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4462	False	NA	NA	False	NA	NA	NA	20286012	20284831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286000
93872	chr15	+	839	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	9	3	9	-3	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCCGGCGTGTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	76788286	76790511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
93873	chr3	-	3831	25	Fusion	ENSMUSG00000094487.2_ENSMUSG00000027752.16	novel	1300	11	NA	NA	695	20284	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	24	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACCCACCACCTCCGGC	NA	False	NA	-98	True	NA	NA	NA	54636184	54600312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_54600388_54600521_54600629_54602542_54602641_54604354_54604429_54606011_54606079_54608908_54609036_54610489_54610594_54614278_54614396_54614506_54614560_54615674_54615817_54616450_54616609_54616693_54616751_54617821_54617894_54619512_54619685_54621144_54621185_54622106_54622218_54622574_54622681_54622957_54623111_54624058_54625063_54625648_54625811_54627824_54627881_54629939_54630059_54633387_54633496_54634988_54635118_54635764
93874	chr11	+	4002	15	FSM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	316	92	316	-92	multi-exon	FALSE	canonical	3	95	junction_1	13.672742137224	10	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCACAACCAATGTACATAGT	NA	False	NA	NA	False	NA	NA	NA	77873943	77921273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142
93876	chr14	+	2824	2	Antisense	novelGene_ENSMUSG00000071470.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCAAATACCCTGGAAAGG	NA	False	NA	NA	False	NA	NA	NA	51035570	51038547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_51037008_51037160
93877	chr3	+	2285	9	NIC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	-5	-49	intron_retention	FALSE	canonical	3	406	junction_8	25.2929708614864	192	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATATTAAAGGTTAAATAAAA	4476	False	NA	NA	False	NA	NA	NA	95222552	95230861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
93878	chr13	+	7318	16	NNC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	25	-13	intron_retention	FALSE	canonical	0	0	junction_15	49.1819298342615	199	127	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGCAAATGATCCCAAACT	NA	False	NA	NA	False	NA	NA	NA	35059511	35089987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375_35086090_35086328
93879	chr18	+	1974	13	NIC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	56	-4	combination_of_known_junctions	FALSE	canonical	3	372	junction_1	338.465163150754	17	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAACTATGTAGCATTTA	7992	False	NA	NA	False	NA	NA	NA	77152996	77234629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
93880	chr10	+	751	8	NNC	ENSMUSG00000061315.15	novel	885	8	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4013.31572927637	8	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4937	False	NA	NA	False	NA	NA	NA	127871468	127884502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883623_127883925_127883997_127884113_127884237_127884361
93882	chr4	-	622	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	33	396	33	-396	multi-exon	TRUE	canonical	3	4612	junction_4	90.890043459116	40	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTTTTAAAACTGCCTGA	57	False	NA	NA	False	NA	NA	NA	57956378	57943768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
93883	chr11	+	2877	7	NNC	ENSMUSG00000001105.16	novel	1167	5	NA	NA	8	8968	intron_retention	FALSE	non_canonical	0	0	junction_5	194.93367818027	4683	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTGGTTAGAAGCCCCGC	NA	False	NA	NA	False	NA	NA	NA	78427194	78441531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78433622_78434310_78434457_78441353
93884	chr1	-	4740	14	NNC	ENSMUSG00000022995.17	novel	2889	15	NA	NA	-61	1828	intron_retention	FALSE	non_canonical	0	0	junction_1	168.180552457328	290	34	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAAGTAATTAACTTTA	NA	False	NA	NA	False	NA	NA	NA	181784138	181730136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181731961_181732015_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749457_181751254_181751406_181758242_181758328_181763224_181763282_181783958
93885	chr17	-	2475	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	3198.86903625502	2	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884199	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879178_45879489_45879783_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
93886	chr17	+	2057	1	Intergenic	novelGene_211	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGGTTTGGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
93887	chr4	+	2332	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	777	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	40.1769523483303	4	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145159006	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145173065_145173342_145176036_145176245_145176328_145176927_145177010
93888	chrM	+	837	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	5	-161	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAATGACCCACCAAACTC	-11	True	NA	NA	False	NA	NA	NA	7765	8602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
93890	chr11	+	4692	17	Antisense	novelGene_ENSMUSG00000009073.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	131	32	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGCCCCGCCCCGCCCTC	NA	False	NA	NA	False	NA	NA	NA	4715855	4799462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_4718276_4730578_4730622_4732182_4732356_4734435_4734564_4737443_4737549_4739663_4739886_4741093_4741214_4744411_4744528_4744845_4744918_4749860_4749996_4753677_4753756_4756255_4756335_4758254_4758326_4766081_4766164_4768499_4768625_4770361_4770494_4798871
93892	chr5	-	6819	19	ISM	ENSMUSG00000055204.16	ENSMUST00000197021.2	8067	34	61388	-1575	167	0	3prime_fragment	FALSE	canonical	3	118	junction_8	20.6209171042954	199	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTGCAGGTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	90426214	90375024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101
93894	chrM	+	1095	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	138	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14787_14835
93895	chr17	+	1826	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	-1	24	1	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAGACTGTGGAGGAGCG	NA	False	NA	-1	True	NA	NA	NA	40157267	40159093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159100
93896	chr15	+	2055	12	FSM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	158	618	129	-618	multi-exon	FALSE	canonical	1	2	junction_11	11.4357710498301	8	33	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAGACATGAGTGGAATC	NA	False	NA	NA	False	NA	NA	NA	94441681	94465569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94460898_94460962_94464619_94464779_94464894
93897	chr2	+	1788	1	Intergenic	novelGene_2687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATTGATTGGTGATGCCT	NA	False	NA	NA	False	NA	NA	NA	118938305	118940093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_118938300_118940100
93898	chr16	-	7062	25	NNC	ENSMUSG00000022718.13	novel	4320	14	NA	NA	7	5060	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	97.0051187080123	578	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGCGCGCGTGGGTCGCCG	NA	False	NA	NA	False	NA	NA	NA	18107103	18066751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_18067116_18067349_18067898_18068317_18068425_18068681_18068865_18069018_18069133_18069220_18069337_18069410_18069520_18069984_18070112_18070264_18070341_18070581_18070696_18070783_18070885_18070960_18073470_18074535_18074650_18076057_18076186_18077412_18077520_18077742_18077844_18090584_18090668_18095029_18095129_18095902_18096005_18096182_18096381_18098083_18098367_18098477_18098621_18100987_18101148_18101560_18102561_18107027
93899	chr17	+	10080	22	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-17106	40836	intron_retention	FALSE	non_canonical	0	0	junction_1	2784.84520020694	1062	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAGAGCGCGACTGCGC	6985	False	NA	NA	False	NA	NA	NA	6680404	6744531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680586_6691899_6692102_6697573_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6708880_6709603_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6714742_6714802_6715923_6716015_6716180_6716313_6716836_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728110_6734316_6734424_6744415
93900	chr4	+	4548	3	NNC	ENSMUSG00000038729.25	novel	6650	3	NA	NA	3	-2124	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	7	77	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTTTTGTTTTTATGTT	-2	True	NA	NA	False	NA	NA	NA	57845250	57894858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_57845333_57854561_57857038_57892868
93901	chr4	+	1338	6	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	2914	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	38.1806233579286	138	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	145159006	145180372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145173065_145173196_145173287_145173342_145176036_145176495_145177162_145177478_145180016
93902	chr17	+	3217	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	0	2571	0	503	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	52	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTCGATCCTAGAATCTG	NA	False	NA	NA	False	NA	NA	NA	33508517	33523644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
93903	chrX	-	1479	3	NIC	ENSMUSG00000025264.13	novel	3804	5	NA	NA	264	-9	intron_retention	FALSE	canonical	3	360	junction_2	5	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAAACAGTATCCATT	NA	False	NA	NA	False	NA	NA	NA	149879255	149872485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_149873778_149874671_149874764_149879160
93904	chr11	-	1753	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139623.2	874	3	23	-902	13	-330	multi-exon	FALSE	canonical	3	12160	junction_2	887	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915317	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914846_115915204
93905	chr13	+	2441	3	Intergenic	novelGene_1416	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATATCCCAGAAATGTG	NA	False	NA	NA	False	NA	NA	NA	65693720	65697769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65696010_65696091_65696115_65697640
93906	chrX	+	4635	18	Antisense	novelGene_ENSMUSG00000031386.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	55	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGTAACAACTAAACAT	6062	False	NA	NA	False	NA	NA	NA	72993421	73010587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_72994308_72994848_72995063_72995250_72995396_72995528_72995673_72995776_72995999_72996167_72996274_72996434_72996650_72996923_72997131_72998188_72998347_72998617_72998767_72998856_72998982_72999062_72999247_73000176_73000280_73000992_73001078_73001857_73002067_73002727_73002887_73003185_73003342_73009419
93907	chr3	-	5724	21	NIC	ENSMUSG00000015697.15	novel	4622	22	NA	NA	-22	0	intron_retention	FALSE	canonical	3	141	junction_10	31.3773803877889	52	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1620	False	NA	NA	False	NA	NA	NA	95264535	95230835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
93908	chr13	+	5431	1	Intergenic	novelGene_1545	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113854947	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113854900_113860400
93909	chr11	+	2139	13	NNC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	45	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	159.775949900686	31	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGATATGGATGACCATAA	NA	False	NA	NA	False	NA	NA	NA	78219285	78233597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559_78232700_78233005
93910	chrM	-	1010	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGGCTCTGCCACC	9986	False	NA	-1	True	NA	NA	NA	3710	2700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
93911	chr2	+	4283	8	Fusion	ENSMUSG00000027439.10_ENSMUSG00000036992.11	novel	734	4	NA	NA	30	0	multi-exon	FALSE	canonical	0	0	junction_7	37.7921274600833	5	16	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTGCTTTGTAAAAG	NA	False	NA	NA	False	NA	NA	NA	148514575	148534869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_148514756_148521222_148521328_148525513_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626_148533774_148533814
93912	chr6	-	1194	4	NNC	ENSMUSG00000107666.2	novel	1505	9	NA	NA	53549	-1029	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	4.54606056566195	84	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATGTGTAAAAATCAATTC	NA	False	NA	NA	False	NA	NA	NA	134326829	134286942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_134287767_134291473_134291617_134293190_134293294_134326705
93913	chr10	-	2191	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	-13	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	688.549631501842	5	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTGTATTTTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	127358284	127353008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356845_127356976_127358156
93914	chr15	+	1895	8	NNC	ENSMUSG00000009585.19	novel	759	5	NA	NA	-46	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	287.157853197612	8	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAGATTAAGTTGTGCAT	7456	False	NA	NA	False	NA	NA	NA	79775813	79792114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79776024_79781904_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791443
93915	chr11	+	899	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	334	266	-171	94	multi-exon	FALSE	canonical	3	35417	junction_1	0	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGAGGCTGATCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	62442330	62443773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
93916	chr16	+	1878	10	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	636.048216201675	2	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930402_22931909
93917	chr17	-	6326	17	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	555	61	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAATCCGCGCGCGCGC	NA	False	NA	NA	False	NA	NA	NA	36170562	36152570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36152656_36155332_36155461_36156728_36157111_36157192_36157263_36158209_36159557_36159682_36159748_36159896_36159990_36161184_36161895_36162001_36162048_36163305_36164779_36164910_36165003_36165092_36165219_36165312_36165490_36165745_36165872_36165989_36166101_36168352_36168906_36169820
93918	chr7	-	1217	1	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	97	42	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACTGCACAAGAAGATGCG	NA	False	NA	NA	False	NA	NA	NA	51397640	51396423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51396400_51397600
93919	chr4	+	2735	5	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-293	777	multi-exon	FALSE	non_canonical	0	0	junction_1	36.8272996566406	79	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145136521	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136755_145138468_145138609_145138756_145138851_145160315_145160385_145176036
93920	chr17	+	4001	11	NIC	ENSMUSG00000116895.2	novel	1684	12	NA	NA	68	1578	intron_retention	FALSE	canonical	3	79	junction_10	55.2348621796054	160	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCGCCGCCCCGTCTCCTC	NA	False	NA	NA	False	NA	NA	NA	15230505	15244289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15238462_15239227_15239331_15239703_15239734_15240527_15240597_15242176
93921	chr6	+	4370	12	NNC	ENSMUSG00000029833.18	novel	4042	19	NA	NA	-5051	2118	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	200.681607124361	2	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAATGTCTTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	37920442	37945349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_37920450_37922691_37922725_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
93922	chr7	-	922	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	45	1	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	3317	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	45109263	45107368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
93923	chr13	-	4587	4	FSM	ENSMUSG00000095432.10	ENSMUST00000181892.9	5293	4	682	24	-10	-24	multi-exon	FALSE	canonical	3	55	junction_1	6.68331255192114	118	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACAAAGTCTTATTTCT	NA	False	NA	NA	False	NA	NA	NA	67701267	67686783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_67691030_67693442_67693539_67694743_67694871_67701149
93924	chr5	+	5377	42	NIC	ENSMUSG00000037426.19	novel	8216	43	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	47.0485592175758	205	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTCCCTCCCTCCCTCC	2036	False	NA	NA	False	NA	NA	NA	33021087	33149005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33021166_33021501_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094891_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33148085_33148169_33148282
93925	chr10	+	2273	8	NNC	ENSMUSG00000040034.16	novel	1286	8	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	437.746641847747	26	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCCAATGTTGGCTTGCT	NA	False	NA	NA	False	NA	NA	NA	7543266	7554642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7551639_7551730_7552127_7554331
93926	chr2	-	1353	2	FSM	ENSMUSG00000039873.5	ENSMUST00000042775.5	1014	2	-374	35	-374	-35	multi-exon	FALSE	canonical	3	37	junction_1	0	158	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGGAAATAAATAGAGCCG	NA	False	NA	NA	False	NA	NA	NA	164675750	164672686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_164672908_164674618
93927	chr13	-	2005	9	ISM	ENSMUSG00000034617.8	ENSMUST00000223398.2	3861	15	147	7423	-17	-4637	5prime_fragment	FALSE	canonical	2	3	junction_8	124.973934782418	6	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTACTGCTGGGTGAGT	NA	False	NA	NA	False	NA	NA	NA	68730076	68716904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68729414
93928	chr11	-	9740	27	NNC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	0	9298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.5038882752856	270	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCGCGGGGTGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	86148401	86092208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86092376_86097775_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86148029_86148242_86148330
93929	chr12	-	4448	15	NNC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-208	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	134.493020075317	53	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	65219586	65179509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65180400_65180577_65180633_65180947_65181149_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
93930	chr5	+	7317	8	Antisense	novelGene_ENSMUSG00000002944.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	47	81	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	17887154	18009382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_17887419_17887887_17888111_17888183_17888485_17888948_17890307_17890355_17890437_17994406_17995678_18005442_18006162_18006282
93931	chr13	+	857	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-12	-21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	237	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74555266_74555337
93932	chr10	-	5508	15	Fusion	ENSMUSG00000020234.11_ENSMUSG00000020235.17	novel	3057	14	NA	NA	14	315	intron_retention	FALSE	non_canonical	0	0	junction_1	194.951799380341	310	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTCATCACCCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	81214271	81199441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_81199518_81199601_81203385_81203474_81203568_81203964_81204070_81204356_81204591_81204907_81205093_81205171_81205275_81205804_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
93933	chr10	+	5333	8	NNC	ENSMUSG00000019817.19	novel	3946	9	NA	NA	2	-9	intron_retention	FALSE	non_canonical	0	0	junction_7	50.7639595760293	1	131	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGGCAATCTTTCTGTCT	2936	False	NA	NA	False	NA	NA	NA	12966457	13007429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_12966769_12981598_12981638_12988262_12988295_12989901_12989965_12992453_12992526_13000599_13000913_13002885_13006580_13006620
93934	chr2	+	4162	16	FSM	ENSMUSG00000026858.19	ENSMUST00000077977.14	3381	16	18	-799	-3	799	multi-exon	TRUE	canonical	3	32	junction_1	8.28385310240484	109	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGCATTCACAAAACCCCAA	NA	False	NA	NA	False	NA	NA	NA	30254262	30276332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30254318_30257563_30257800_30258888_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
93935	chr17	-	1765	8	Fusion	ENSMUSG00000064308.11_ENSMUSG00000083534.2	novel	1034	5	NA	NA	-10	1841	multi-exon	FALSE	non_canonical	0	0	junction_1	68.6199233280759	7	9	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATGTTGGGTATTGATT	NA	False	NA	NA	False	NA	NA	NA	37292139	37278245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37278460_37278899_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281958_37289542_37289826_37292031
93936	chr7	+	4439	5	NIC	ENSMUSG00000059851.16	novel	1270	7	NA	NA	-6	-5	intron_retention	FALSE	canonical	3	599	junction_2	41.6675833232502	11	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAGGAGGTTTTTTTTTT	615	False	NA	NA	False	NA	NA	NA	4743145	4750508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
93938	chr9	-	3100	3	Antisense	novelGene_ENSMUSG00002076818.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTTTCCGCCCGCTTCCCT	NA	False	NA	NA	False	NA	NA	NA	40716474	40712569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_40712643_40713211_40715989_40716224
93939	chr19	+	1803	8	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	-345	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	555.500399529605	1	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	3326	False	NA	NA	False	NA	NA	NA	6422097	6427226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424158_6424275_6424578_6424639_6424748_6424929_6426325
93940	chr13	-	2521	4	NIC	ENSMUSG00000078995.11	novel	4126	4	NA	NA	1	-1551	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	11.323525167642	72	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTGGTCTGAAAAATAGAG	2326	False	NA	NA	False	NA	NA	NA	67523831	67513253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_67515485_67520295_67520392_67520869_67520997_67523764
93941	chr2	+	2595	18	NIC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	-7	5	combination_of_known_junctions	FALSE	canonical	3	59	junction_16	718.681058375563	3283	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGAGCCTTGCATGTGT	NA	False	NA	NA	False	NA	NA	NA	157120929	157167981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157165142_157165191_157167630
93942	chr4	-	4087	3	NIC	ENSMUSG00000028495.15	novel	639	4	NA	NA	-13	1972	intron_retention	FALSE	canonical	3	18159	junction_1	603	15	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTCCCATAGGCAAAGG	NA	False	NA	NA	False	NA	NA	NA	86775604	86770924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_86774251_86774382_86775097_86775557
93943	chr19	-	1558	5	FSM	ENSMUSG00000024666.7	ENSMUST00000235990.2	1260	5	-298	0	-43	0	multi-exon	FALSE	canonical	3	27	junction_3	58.8175143983491	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1467	False	NA	NA	False	NA	NA	NA	10554769	10547843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_10548633_10548892_10548969_10552200_10552300_10552603_10552876_10554447
93944	chr4	+	2127	1	NIC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	-570	mono-exon	FALSE	NA	NA	NA	NA	NA	73	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGTACCTGTCAAGTC	NA	False	NA	NA	False	NA	NA	NA	150321696	150323823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_150321700_150323800
93945	chr19	+	2481	8	FSM	ENSMUSG00000064105.14	ENSMUST00000099373.12	4955	8	1332	1142	1323	471	multi-exon	FALSE	canonical	0	0	junction_3	39.1240830889495	17	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACCCTGTTTCTAATGAA	NA	False	NA	NA	False	NA	NA	NA	46751366	46867489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
93946	chr11	+	13236	33	NNC	ENSMUSG00000020721.17	novel	3753	14	NA	NA	-753	-18	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	48.5009262153827	200	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCTTTTTAATAATT	9665	False	NA	NA	False	NA	NA	NA	107438002	107584634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107438121_107440171_107440228_107446344_107446402_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518175_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
93947	chr15	+	1745	12	NNC	ENSMUSG00000022407.11	novel	3711	13	NA	NA	4	15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	308.325925009653	2	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTACATTAAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80832723	80853335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844711_80846913_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
93948	chr2	+	7560	15	NNC	ENSMUSG00000041966.19	novel	1905	15	NA	NA	-23	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	58.1999105827211	5	133	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTAGGTGTGTGTATACA	NA	False	NA	NA	False	NA	NA	NA	70886166	70926197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70922027_70922121
93949	chr4	+	5665	19	NNC	ENSMUSG00000040455.18	novel	6003	18	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	9.19087711930816	207	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATTTTAGTTCCCTGGCTT	-8	True	NA	NA	False	NA	NA	NA	21776271	21837869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234_21834461_21834797
93950	chrX	-	8832	27	NNC	ENSMUSG00000031386.15	novel	8262	26	NA	NA	-620	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	6	junction_1	104.937343943165	584	58	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTGGTATTTACCCGTG	NA	False	NA	NA	False	NA	NA	NA	73010583	72986400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72987297_72987351_72988084_72988251_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72992025_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
93951	chr9	-	5873	18	FSM	ENSMUSG00000032504.16	ENSMUST00000035086.13	5951	18	78	0	63	0	multi-exon	FALSE	canonical	3	268	junction_2	35.4147936949624	236	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTGGAGTATGAATTC	NA	False	NA	NA	False	NA	NA	NA	113537249	113480811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
93952	chr7	-	4532	5	NNC	ENSMUSG00000030980.18	novel	4884	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	70	junction_1	254.500859527036	3	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAAATATAGTCTTTTGA	NA	False	NA	NA	False	NA	NA	NA	118454907	118441446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118452111_118452564_118454845
93953	chr9	+	4505	30	NNC	ENSMUSG00000032187.17	novel	6354	34	NA	NA	-41	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	233.216561007534	4	32	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCTAACCTCACCAAGAAGA	1291	False	NA	NA	False	NA	NA	NA	21527518	21597511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547582_21548640_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554043_21558644_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589248_21589348_21589611_21589690_21590224_21590444_21597317
93954	chr8	+	3552	25	Fusion	ENSMUSG00000031629.15_ENSMUSG00000110270.2	novel	3010	14	NA	NA	0	11194	multi-exon	FALSE	non_canonical	0	0	junction_6	150.413452181719	537	29	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCAGCTGGCGGAGCCA	NA	False	NA	NA	False	NA	NA	NA	47005103	47070192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015662_47023048_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289_47032201_47034471_47034518_47034600_47034685_47039376_47039486_47039640_47039732_47043249_47043337_47045625_47045795_47046508_47046743_47052756_47052902_47058119_47058248_47063474_47063665_47065407_47065481_47066757_47066896_47070050
93955	chr2	-	1557	7	NIC	ENSMUSG00000085682.3	novel	1691	8	NA	NA	6	-30	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	11.5325625946708	3	20	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATATTCAAATGTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	166349985	166341990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166347939_166348119_166348706_166348871_166349807
93956	chr11	+	2735	13	NIC	ENSMUSG00000020697.17	novel	3631	20	NA	NA	0	-489	intron_retention	FALSE	canonical	0	0	junction_1	55.0930399919586	6	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTGGCTGAAAGTTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	82672018	82686878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_82672099_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853
93957	chr16	-	7225	26	NNC	ENSMUSG00000022521.11	novel	7749	30	NA	NA	-65	875	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	14.6857209560852	283	108	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTGATATAAATTACTGAA	NA	False	NA	NA	False	NA	NA	NA	3946550	3900689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919533_3925291_3925381_3925899_3926140_3926963_3927083_3932637_3932828_3933641_3933822_3935118_3935533_3936896_3937086_3937595_3937721_3942033_3942079_3942499_3942672_3943508_3943627_3944330_3944478_3944733_3944807_3946303
93958	chr17	-	2756	14	Fusion	ENSMUSG00000023905.16_ENSMUSG00000041319.15	novel	1431	14	NA	NA	1037	0	intron_retention	FALSE	non_canonical	0	0	junction_11	204.850096729725	91	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	NA	False	NA	-73	True	NA	NA	NA	23894490	23887592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892864_23892941_23893039_23893516_23893648_23893855
93959	chr4	+	3756	6	Intergenic	novelGene_2030	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	30.3354578010618	105	64	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCAATTATGTCCATCCG	NA	False	NA	NA	False	NA	NA	NA	146223569	146256587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146223715_146240246_146240316_146250678_146250737_146251579_146251707_146253158_146254641_146254712
93960	chr10	+	4319	10	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	29	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTTTGGGTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	62647554	62675515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955
93961	chr1	+	2349	2	Antisense	novelGene_ENSMUSG00000048402.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCGTTTTGTTCTTAGAA	NA	False	NA	NA	False	NA	NA	NA	118765106	118769531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_118765906_118767981
93962	chr4	-	1974	4	FSM	ENSMUSG00000028495.15	ENSMUST00000123229.8	639	4	-17	-1318	-17	226	multi-exon	FALSE	canonical	3	18159	junction_1	2678.8979077225	62	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAAAAACACACTGTGC	NA	False	NA	NA	False	NA	NA	NA	86775608	86772670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_86774251_86774382_86774594_86774964_86775097_86775557
93963	chr15	-	2566	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-86	-188	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCTCACACCCTACCGA	672	False	NA	NA	False	NA	NA	NA	36793849	36771201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772561_36772630_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
93964	chrX	+	3952	14	FSM	ENSMUSG00000000881.13	ENSMUST00000113735.3	3692	14	-265	5	-265	-3	multi-exon	FALSE	canonical	3	21	junction_2	29.3332212656995	6	100	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATGAACAATGGCTCAGAG	NA	False	NA	NA	False	NA	NA	NA	99818081	99862009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_99818551_99819412_99819570_99819984_99820088_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
93965	chr2	+	8051	36	NNC	ENSMUSG00000036202.17	novel	2789	14	NA	NA	-339	-183	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	141.336090975536	3	62	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCGCATGGGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	51962504	52011885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51962637_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983578_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
93967	chr5	-	4044	4	Intergenic	novelGene_711	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	95	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCTCCATTGTTGGTGGG	NA	False	NA	NA	False	NA	NA	NA	42990787	42979416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_42980117_42980227_42981085_42988254_42988620_42988665
93968	chr16	-	3229	21	NNC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	7	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	422.699240004048	1	58	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATCTAGCATTTATTTAA	1514	False	NA	NA	False	NA	NA	NA	91440027	91418282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438485_91438578_91439844
93969	chr8	-	5884	4	ISM	ENSMUSG00000031488.15	ENSMUST00000033878.14	3217	5	18025	-3153	-2145	-32	3prime_fragment	FALSE	canonical	3	63	junction_1	5.73488351136175	81	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAACAATAAATACAATCAC	NA	False	NA	NA	False	NA	NA	NA	27646649	27628832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_27633423_27640722_27640832_27644173_27644964_27646254
93970	chr2	+	2000	10	NIC	ENSMUSG00000059005.14	novel	1654	11	NA	NA	-5	0	intron_retention	FALSE	canonical	3	3912	junction_1	2151.57901247284	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7489	False	NA	NA	False	NA	NA	NA	75489618	75496465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_75489734_75491809_75491933_75492014_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
93971	chr13	+	2293	2	NNC	ENSMUSG00000078952.10	novel	2726	2	NA	NA	1092	-372	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGTCTTGGATGCAATG	NA	False	NA	NA	False	NA	NA	NA	97620554	97633143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97620617_97630912
93972	chr7	+	2120	7	Antisense	novelGene_ENSMUSG00000030407.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACCCAATAAAGAAGCAG	1416	False	NA	NA	False	NA	NA	NA	18874222	18883184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_18875223_18877109_18877228_18878584_18878684_18878807_18878961_18880793_18881113_18882300_18882441_18882893
93974	chrX	+	9443	5	Intergenic	novelGene_4045	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	113	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	122307198	122755359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_122310580_122312117_122312779_122636355_122636360_122748424_122752038_122753575
93975	chr1	-	4107	16	NIC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-17	-13	intron_retention	FALSE	canonical	3	2257	junction_10	169.057965075756	73	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACATGTGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	20890501	20873242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
93976	chr15	-	2797	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	259	-934	-59	0	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	91229	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	699	False	NA	NA	False	NA	NA	NA	36793822	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
93977	chr14	-	6242	29	NNC	ENSMUSG00000025278.10	novel	9100	46	NA	NA	11689	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	130.519702946118	2	118	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATAAACGCTCCCTGTCAT	NA	False	NA	NA	False	NA	NA	NA	14573343	14518191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_14519469_14521125_14521330_14523759_14523979_14527551_14527729_14530593_14530727_14533723_14533840_14535071_14535210_14535792_14536060_14538626_14538750_14538857_14539011_14539810_14540015_14540613_14540773_14542253_14542428_14543261_14543391_14545459_14545601_14546215_14546319_14547059_14547099_14550415_14550664_14552389_14552580_14553669_14553827_14554388_14554513_14556650_14556815_14560003_14560165_14561088_14561252_14562446_14562621_14563797_14564396_14565048_14565312_14567771_14567890_14573217
93978	chr16	+	3247	17	Intergenic	novelGene_3603	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	64	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACCGGCCACCCCCGGCG	NA	False	NA	NA	False	NA	NA	NA	17469084	17540718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_17470128_17470572_17470674_17471055_17471220_17471306_17471406_17471788_17471853_17472874_17472942_17473010_17473146_17473307_17473436_17473541_17473668_17481238_17481361_17489408_17489536_17490930_17491259_17492264_17492523_17498412_17498655_17503312_17503368_17515469_17515559_17540619
93979	chr16	-	3169	7	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	12	-196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	449.096283910502	10	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCTCTTGTAAGTTCCTC	8652	False	NA	NA	False	NA	NA	NA	33787396	33775359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782014_33782108_33782611_33784141_33784296_33787195
93980	chrX	+	2385	4	NNC	ENSMUSG00000031379.14	novel	2915	7	NA	NA	1	13229	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	132.098448136229	19	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGCGGAACAGTAAAATTGA	NA	False	NA	NA	False	NA	NA	NA	163052507	163068099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_163052674_163054598_163054728_163063124_163063218_163066102
93981	chr3	-	3924	4	Antisense	novelGene_ENSMUSG00000025764.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	95	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACAACACAGGGAGACAG	NA	False	NA	NA	False	NA	NA	NA	41571272	41558901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_41559426_41564236_41564354_41567555_41570049_41570482
93982	chr16	-	3260	17	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	75	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	379.752833885081	189	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGGTTTAAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	15455189	15441966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448277_15448324_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
93983	chr1	+	4614	1	Genic_Genomic	ENSMUSG00000041483.15	novel	NA	NA	NA	NA	719	180	mono-exon	FALSE	NA	NA	NA	NA	NA	156	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTAAATTACATTATGT	NA	False	NA	NA	False	NA	NA	NA	136553357	136557971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_136553400_136558000
93984	chr4	-	5422	9	Antisense	novelGene_ENSMUSG00000099202.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	66	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCCACACCCCGCCAACC	NA	False	NA	NA	False	NA	NA	NA	132927030	132857852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_132858038_132903749_132903924_132912279_132912413_132912907_132913061_132916385_132916508_132917440_132917495_132919485_132919576_132921710_132922217_132923025
93985	chr13	-	2232	11	NIC	ENSMUSG00000069089.9	novel	1988	12	NA	NA	11	-8	intron_retention	FALSE	canonical	3	644	junction_3	47.0446596331613	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATATTTGTGATTTAT	NA	False	NA	NA	False	NA	NA	NA	100867426	100839825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
93987	chr16	+	2200	4	ISM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	77	0	-69	0	intron_retention	FALSE	canonical	3	9815	junction_1	1814.47813127877	27	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	55786714	55791798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872
93988	chr2	-	7349	40	FSM	ENSMUSG00000033396.14	ENSMUST00000036450.8	7671	40	48	274	37	-274	multi-exon	FALSE	canonical	0	0	junction_26	28.2050349648808	213	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCCATTTGAGTTGAAAAG	7027	False	NA	NA	False	NA	NA	NA	121948819	121884274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_121884542_121884860_121885013_121885846_121886003_121886177_121886267_121886546_121886716_121888823_121888932_121889902_121890037_121890180_121890319_121890651_121890851_121891402_121891543_121895389_121896138_121896725_121896941_121899219_121899383_121900349_121900458_121901345_121901547_121902535_121902791_121903326_121903487_121904984_121905094_121905775_121905982_121910713_121910880_121912335_121912403_121913880_121914043_121915375_121915522_121917343_121917451_121918613_121918818_121922637_121922849_121923445_121923622_121923896_121924025_121924938_121925011_121926070_121926248_121927736_121927913_121928581_121928738_121932126_121932260_121934388_121934535_121938517_121938967_121939173_121939312_121942196_121942390_121943495_121943721_121945088_121945271_121948601
93989	chr11	-	3818	15	NNC	ENSMUSG00000087050.2	novel	2429	2	NA	NA	2165	46712	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	109	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCTGGGCGCTCTCTGCT	2052	False	NA	NA	False	NA	NA	NA	77921326	77874125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_77874202_77874839_77875021_77897550_77897624_77900224_77900619_77903994_77904119_77906378_77906456_77908889_77909054_77913181_77913341_77913850_77914643_77915783_77915911_77916708_77916853_77918143_77918242_77919049_77919134_77919666_77919808_77920142
93990	chr12	+	2051	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	45	-45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1908.10962997413	55	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGGCATACAAGTATTAAA	NA	False	NA	NA	False	NA	NA	NA	24758284	24764100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763792_24763843
93991	chr15	-	4090	18	NIC	ENSMUSG00000033075.18	novel	3806	19	NA	NA	142	3	combination_of_known_junctions	FALSE	canonical	3	73	junction_17	37.6096321314865	19	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGGGCCCTTTCACAGT	6603	False	NA	NA	False	NA	NA	NA	97990990	97939109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
93992	chr1	-	4441	19	NNC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	4	-144	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_17	137.868921465908	2	55	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAAAAAAAAGGT	NA	False	NA	NA	False	NA	NA	NA	133589112	133547743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588207_133588360_133588993
93993	chr10	+	2173	4	Antisense	novelGene_ENSMUSG00000019773.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGCCGCAGCTCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	5749170	5755411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5750439_5751154_5751243_5751868_5752531_5755256
93994	chr16	+	2925	8	Intergenic	novelGene_3584	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_7	15.5103651978742	68	8	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATCTATCTATCTATCTAT	NA	False	NA	NA	False	NA	NA	NA	8970660	9169805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9038336_9038565_9040402_9040532_9040767_9040896_9058024_9059929_9169741
93995	chrM	+	1319	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	59	0	59	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	128	False	NA	NA	False	NA	NA	NA	10225	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10200_11500
93996	chr1	-	5581	26	NIC	ENSMUSG00000009418.17	novel	13117	30	NA	NA	-410	-2273	combination_of_known_junctions	FALSE	canonical	2	3	junction_25	17.2810184885035	136	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAACAAAAAATATATGT	2888	False	NA	NA	False	NA	NA	NA	135438599	135368858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388513_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135437941
93997	chr16	-	3158	4	NIC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	129	junction_1	528.615171935123	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGTCTCCTGCCTCT	8675	False	NA	NA	False	NA	NA	NA	33787373	33775151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_33777306_33781938_33782611_33784141_33784296_33787195
93998	chr11	-	2799	7	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-321	-9	intron_retention	FALSE	canonical	3	52	junction_6	73.0585761944178	4	60	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATGGCTGTGGAGCTTG	7340	False	NA	NA	False	NA	NA	NA	94541853	94535830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540288
94000	chr4	+	3199	1	Intergenic	novelGene_1871	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCCAAAGCGAAAGCGAAA	NA	False	NA	NA	False	NA	NA	NA	63492361	63495560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_63492400_63495600
94001	chr4	+	2795	5	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	18	1906	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.8272996566406	102	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145136853	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145137143_145138461_145138609_145138756_145138851_145160315_145160385_145176036
94002	chr6	-	5892	24	NNC	ENSMUSG00000045962.17	novel	8364	26	NA	NA	81	592	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	6.68378394802631	3	92	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCAAATTCCTTATTCCC	1615	False	NA	NA	False	NA	NA	NA	119969409	119902947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_119903649_119904007_119904196_119911216_119911412_119913329_119913533_119914317_119914980_119916598_119916664_119920766_119920828_119923197_119923282_119924935_119926381_119926968_119927092_119927203_119927262_119927459_119927634_119927975_119928093_119928595_119928759_119928858_119928957_119929645_119929931_119933031_119933125_119937604_119937680_119945436_119945625_119946197_119946532_119947818_119948039_119949728_119949818_119967052_119967202_119969287
94003	chr7	-	1078	5	NIC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	944	2	intron_retention	FALSE	canonical	3	13686	junction_2	412.950587237747	13	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACAAGGCCTGACTGG	9383	False	NA	NA	False	NA	NA	NA	99131897	99128097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776
94004	chr4	-	1252	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-71	-179	-71	179	mono-exon	FALSE	NA	NA	NA	NA	NA	4	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91740977	91739725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
94005	chr15	+	5475	6	NIC	ENSMUSG00000022412.15	novel	5148	6	NA	NA	-12	0	intron_retention	FALSE	canonical	3	21	junction_1	84.6678215144337	10	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACGTGTCTATGTGGT	2803	False	NA	NA	False	NA	NA	NA	80118268	80137572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80118760_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
94007	chr16	+	2770	15	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	81	-18470	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	121.232025808499	3	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAGGTAAAGATCCTTT	NA	False	NA	NA	False	NA	NA	NA	48251680	48363533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48362113
94008	chr8	+	2955	4	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-49	2265	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	15.5777619273972	38	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTTGCCTTGGTCGTGG	NA	False	NA	NA	False	NA	NA	NA	129990072	130011590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_129990206_130007503_130007631_130007817_130007879_130008956
94009	chr14	-	4512	7	NNC	ENSMUSG00000046753.11	novel	514	3	NA	NA	370	9451	intron_retention	FALSE	non_canonical	0	0	junction_1	0	20	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCCTGGTGATTTCATT	NA	False	NA	NA	False	NA	NA	NA	27205462	27193595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_27194503_27197649_27197773_27198492_27198653_27199066_27199175_27201582_27201763_27201878_27202047_27202596
94010	chrX	-	8419	5	Antisense	novelGene_ENSMUSG00000093796.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	118	89	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGCGGAAGAAAGAATGTA	NA	False	NA	NA	False	NA	NA	NA	122755359	122307210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_122310217_122518602_122518605_122636352_122636368_122748429_122752026_122753559
94012	chr2	-	3034	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_8	154.892543397027	600	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	120234559	120185792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120218869_120219021_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
94013	chr2	-	8942	33	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	556	69	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGCGACCTGGGGCCGT	NA	False	NA	NA	False	NA	NA	NA	52012393	51963184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51963258_51966080_51966186_51966988_51967120_51967203_51967298_51968340_51968533_51971237_51971329_51972674_51972814_51975036_51975189_51978657_51978773_51979530_51979696_51980180_51980295_51982051_51982115_51982289_51982390_51983509_51983582_51984602_51984675_51985833_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993710_51994557_51994599_51995444_51995650_51996912_51997013_51997649_51997768_51998449_51998603_51999202_51999288_51999362_51999413_51999920_52003011_52006257_52006402_52006675_52006758_52006846_52006962_52009027_52009181_52010269
94014	chrM	+	2274	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-450	0	450	mono-exon	FALSE	NA	NA	NA	NA	NA	21	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCCAAGACAACCAACCAAA	-4	True	NA	4	True	NA	NA	NA	11741	14015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_14000
94015	chr17	+	4174	7	NIC	ENSMUSG00000068039.14	novel	3419	10	NA	NA	-4	-4	intron_retention	FALSE	canonical	3	3235	junction_4	166.254239712021	267	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACCACCTGGGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	13135321	13143439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_13135517_13136684_13136771_13136929_13139754_13140989_13141166_13141495_13141620_13142104_13142581_13143146
94016	chr6	-	3603	12	NIC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_1	27.9506649191301	220	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	112673618	112603375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
94017	chr13	+	3709	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	2	1539	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	121.810672767209	392	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTAGTGCCTTTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	62277731	62322772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62289825_62289984_62317255_62317383_62317567_62317629_62318963_62321980_62322536
94018	chr19	-	4227	4	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACAAGACCGTTTTCTCG	NA	False	NA	NA	False	NA	NA	NA	22705271	22699842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773_22702496_22703436_22704723_22704769
94019	chr13	-	2197	3	FSM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	5	4	5	-2	multi-exon	FALSE	canonical	3	31	junction_1	2.5	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGTGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	62706438	62664612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_62666545_62668231_62668359_62706300
94020	chr2	+	5087	8	Antisense	novelGene_ENSMUSG00000085513.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	100	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTACAGGGAGGAAGTTG	2500	False	NA	NA	False	NA	NA	NA	177003452	177270011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177004868_177077538_177077873_177233777_177234331_177260968_177263286_177263477_177263607_177266761_177266817_177267138_177267334_177269922
94021	chrM	-	1154	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-2	-1083	-2	1083	mono-exon	FALSE	NA	NA	NA	NA	NA	43	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCTAAATGAAGGGAGAAAA	9248	False	NA	NA	False	NA	NA	NA	6940	5786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5800_6900
94022	chr13	-	6283	41	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	0	27097	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	598.320599678801	5	52	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACGGCTGTCAGGAACAGC	NA	False	NA	NA	False	NA	NA	NA	6698761	6602706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6602773_6603213_6603367_6605386_6605504_6605586_6605685_6606577_6606737_6607795_6607925_6608191_6608281_6609390_6609519_6610064_6610180_6610637_6610732_6611983_6612122_6613409_6613540_6623053_6623203_6624399_6624468_6625052_6625163_6627422_6627551_6628474_6628621_6629451_6629557_6629685_6630152_6630201_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
94024	chr13	-	3989	3	Fusion	ENSMUSG00000114662.2_ENSMUSG00000086693.2	novel	887	2	NA	NA	40259	-10318	intron_retention	FALSE	non_canonical	0	0	junction_1	0	109	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTTGAATCTCCTAGGA	NA	False	NA	NA	False	NA	NA	NA	41114368	41071125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_41072276_41107049_41107146_41111625
94026	chr4	+	1687	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	-473	-1	-52	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	147	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCTCTGTAAATCTTG	5504	False	NA	NA	False	NA	NA	NA	116565653	116572301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
94027	chr9	+	3883	12	Antisense	novelGene_ENSMUSG00000032504.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCCAGCCTTCAGGTCCC	NA	False	NA	NA	False	NA	NA	NA	113482394	113514875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_113484173_113485081_113485276_113486153_113486277_113488897_113488994_113490013_113490153_113491340_113491584_113500822_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509250_113514380
94029	chr7	-	1947	12	NIC	ENSMUSG00000044702.14	novel	2559	13	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	40.7258522479556	106	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTTGGCTTGTTCTAT	NA	False	NA	NA	False	NA	NA	NA	121732129	121706487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121727360_121727667_121728145_121728240_121728896_121728957_121731942
94030	chr4	+	4422	29	Intergenic	novelGene_1827	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	361	20	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTTACAAAGCGGCGGC	3133	False	NA	NA	False	NA	NA	NA	41194335	41275099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_41195247_41195333_41195528_41195609_41195672_41195744_41195852_41195941_41196042_41196325_41196532_41196727_41196808_41199216_41199266_41199493_41199585_41199714_41199903_41201463_41201534_41202273_41202569_41203533_41203573_41205523_41205740_41206154_41206330_41206837_41207105_41209352_41209570_41211704_41211895_41216565_41216636_41218312_41218362_41221553_41221622_41223355_41223459_41226278_41226334_41227197_41227277_41229694_41229849_41233603_41233718_41235518_41235590_41251529_41251672_41275039
94031	chrM	-	813	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTCTTAAGCTATTTTA	5379	False	NA	NA	False	NA	NA	NA	1023	210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1000
94032	chr2	+	4263	7	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	-41	2548	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	92.1479788166838	647	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177189966	177204104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177194885_177194988_177198701_177198829_177199035_177199097_177200246_177200484_177200567
94033	chr11	+	1128	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	117	7	-3	-4	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	11	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAACACATTGTGTGACT	NA	False	NA	NA	False	NA	NA	NA	9068623	9086160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
94034	chr11	-	1276	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-201	-73	201	mono-exon	FALSE	NA	NA	NA	NA	NA	8951	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCCTTTAAAGCACTAGA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
94035	chr5	-	4564	2	Antisense	novelGene_ENSMUSG00000060961.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	115	junction_1	0	3	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	89356998	89351754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_89351965_89352644
94036	chr8	+	4902	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	25	-177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	537.254353169893	365	27	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	NA	False	NA	NA	False	NA	NA	NA	20016490	20045711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20037906_20038086_20039783_20039904_20041811
94037	chr2	+	1135	2	NNC	ENSMUSG00000059005.14	novel	754	6	NA	NA	2792	426	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATGAAACAAAATGATAGTA	NA	False	NA	-66	True	NA	NA	NA	75495624	75496891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75495650_75495781
94039	chr10	-	2020	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	91	178	11	-178	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	2858	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358222	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
94040	chrM	-	393	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	86	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCTACTGAGAAGCC	1133	False	NA	NA	False	NA	NA	NA	15055	14662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14700_15100
94041	chr16	+	1817	8	ISM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	1511	0	-276	0	3prime_fragment	FALSE	canonical	3	1278	junction_7	318.260450395135	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	7250	False	NA	NA	False	NA	NA	NA	22927704	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
94042	chr10	+	5222	9	NNC	ENSMUSG00000019817.19	novel	3897	8	NA	NA	3	-9	intron_retention	FALSE	non_canonical	0	0	junction_8	51.3929409063151	1	137	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGGCAATCTTTCTGTCT	3099	False	NA	NA	False	NA	NA	NA	12966620	13007429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_12966769_12967518_12967557_12981598_12981638_12988262_12988295_12989901_12989965_12992439_12992526_13000599_13000913_13002885_13006580_13006620
94043	chr19	+	7470	13	FSM	ENSMUSG00000024759.15	ENSMUST00000025668.9	4368	13	-42	-3060	-2	-14	multi-exon	TRUE	canonical	3	31	junction_6	6.18409698788397	296	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCAGCATTGAATTGTGG	NA	False	NA	NA	False	NA	NA	NA	7471760	7517025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_7472027_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
94045	chr2	+	6527	12	NNC	ENSMUSG00000042548.15	novel	6981	12	NA	NA	435	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	51.8797082897678	249	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCACTTGTCTCCTTGTC	NA	False	NA	NA	False	NA	NA	NA	153188199	153245921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_153188311_153194108_153194192_153198986_153199099_153233448_153233570_153233644_153233743_153234760_153234855_153235268_153235422_153235543_153235708_153235801_153235899_153238651_153238758_153239295_153239921_153241158
94046	chr11	-	3248	5	Intergenic	novelGene_2548	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	22.5873305195634	18	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATTGTGACCTG	NA	False	NA	NA	False	NA	NA	NA	121847536	121832039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121834966_121836089_121836151_121836329_121836457_121842218_121842270_121847453
94047	chr5	-	4631	27	Fusion	ENSMUSG00000029730.17_ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	-2594	intron_retention	FALSE	non_canonical	0	0	junction_1	345.276837732502	90	39	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCCCGCCCTCAAGCCC	1952	False	NA	NA	False	NA	NA	NA	138185488	138170266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_138170305_138170440_138170509_138170602_138171155_138171232_138171330_138173010_138173122_138173204_138173285_138174171_138174237_138174313_138174378_138174469_138174524_138174871_138174979_138175076_138175173_138175416_138175461_138176182_138176441_138176536_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
94048	chr13	+	3777	5	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-77	1306	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	141.986795160677	4	100	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCCAATATTGGCTAATAT	NA	False	NA	NA	False	NA	NA	NA	62163720	62200106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62164071_62164138_62194994_62195122_62195306_62195368_62196729
94049	chr2	-	10643	27	NNC	ENSMUSG00000027131.4	novel	983	5	NA	NA	46	96843	intron_retention	FALSE	non_canonical	0	0	junction_1	160.384615384615	30	71	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGGAGAGCCACGAGAGG	5050	False	NA	NA	False	NA	NA	NA	112198319	112096512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_112097437_112146584_112146629_112163725_112163821_112164711_112164844_112166118_112166268_112167700_112167756_112168201_112168332_112169583_112169833_112172175_112172388_112174170_112174331_112174481_112174583_112174832_112174891_112177243_112177417_112177659_112177781_112179620_112179717_112181619_112181739_112182784_112182892_112183234_112183403_112184515_112184713_112185317_112185495_112186808_112186936_112187827_112187935_112188110_112188298_112188850_112188985_112190760_112194842_112195477_112197862_112198163
94050	chr3	+	2180	5	ISM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	130	118	79	-118	intron_retention	FALSE	canonical	0	0	junction_1	386.814797416024	4	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCTGATGTGTAAGG	2690	False	NA	NA	False	NA	NA	NA	95018462	95030244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572
94051	chr11	-	3450	14	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	56	-33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1555.19481075789	5	74	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTGAAATAAACAGTTACT	8192	False	NA	NA	False	NA	NA	NA	50216444	50185326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187059_50188160_50188222_50188943_50189064_50189955_50190172_50191720_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
94052	chr13	-	2440	13	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3277.58494571672	2	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGTGCCCAATTTGA	4756	False	NA	NA	False	NA	NA	NA	58550325	58539048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540116_58541027_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
94053	chr17	+	1315	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1258	0	5	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTTTTTCCTTGCACAC	NA	False	NA	NA	False	NA	NA	NA	29251646	29261089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
94054	chr2	+	765	6	ISM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	155	459	-6	-6	intron_retention	FALSE	canonical	3	5241	junction_1	561.076964417539	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGAATGGGCTTGGCTG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752
94055	chr16	+	8423	12	FSM	ENSMUSG00000022961.19	ENSMUST00000114037.9	8399	12	-31	7	-31	-4	multi-exon	FALSE	canonical	3	171	junction_11	95.0516171212009	392	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAAATGTTGTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	91444735	91476076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91474988
94056	chr16	-	564	1	Intergenic	novelGene_3756	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
94057	chr11	-	1016	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	130	487	0	-263	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTAATAGTTAATATCTGG	NA	False	NA	NA	False	NA	NA	NA	33113076	33102773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
94058	chr4	+	2338	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-18	2581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	129.181422813035	1	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576855	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597630_147597713_147598430_147600065
94059	chrM	+	2431	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3295_3480
94060	chr18	+	3221	13	NIC	ENSMUSG00000024283.16	novel	3070	14	NA	NA	0	3	combination_of_known_junctions	TRUE	canonical	3	106	junction_6	160.217733794428	5	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTTGGCTTTTTTTTT	2	True	NA	NA	False	NA	NA	NA	7868844	7927522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
94061	chr11	+	626	4	FSM	ENSMUSG00000071866.13	ENSMUST00000155824.2	2853	4	2224	3	1788	-3	multi-exon	FALSE	canonical	3	36680	junction_3	513.872444181325	99	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTTTGTCCTTGTTTG	1859	False	NA	NA	False	NA	NA	NA	6368099	6369809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6368132_6368225_6368315_6369112_6369286_6369477
94062	chr17	-	793	3	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4301	4	766	-4	3prime_fragment	FALSE	canonical	3	10930	junction_2	637.5	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTCCTGCTCTCCTTG	NA	False	NA	-83	True	NA	NA	NA	45879896	45878704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783
94063	chr4	+	7363	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-280549	4604	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	76.333151382607	176	118	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGGAAAAGTGCCTGG	5558	False	NA	NA	False	NA	NA	NA	147109581	147422795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147109730_147409230_147409335_147413438_147413566_147415724_147417182_147417268
94064	chr5	-	5693	32	FSM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	11	4457	-6	1367	multi-exon	FALSE	canonical	3	126	junction_29	101.260073560108	252	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGAAGTGGACTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	124563662	124511227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
94065	chr3	-	4297	3	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	-704	-1464	-661	1	intron_retention	FALSE	canonical	3	166	junction_1	75	75	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAATCCAA	NA	False	NA	NA	False	NA	NA	NA	102074950	102064031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_102065814_102070614_102070850_102072670
94066	chr9	+	3440	16	FSM	ENSMUSG00000009741.16	ENSMUST00000216558.2	1623	16	-4	-1813	-4	-3	multi-exon	TRUE	canonical	3	224	junction_8	65.0003076915794	306	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAACGTGTCACTCATTT	2018	False	NA	NA	False	NA	NA	NA	113760717	113806264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_113760835_113773915_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
94067	chr1	-	2112	18	NNC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	67	225	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	134.951458657443	7	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTCTCTGGAGACTTCT	NA	False	NA	NA	False	NA	NA	NA	58544017	58503137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536524_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
94068	chr17	+	926	4	Antisense	novelGene_ENSMUSG00000024048.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	801	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTTCCAGACTCCGCAGT	NA	False	NA	NA	False	NA	NA	NA	71301288	71309174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_71301776_71303098_71303266_71303690_71303890_71309101
94070	chr14	-	2755	15	NNC	ENSMUSG00000022099.18	novel	5418	16	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	59.4984565054474	384	1	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATCTATTGTTTCTATCC	NA	False	NA	NA	False	NA	NA	NA	70864498	70841113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70842295_70842407_70842489_70842736_70842809_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
94072	chr11	+	533	4	NIC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	3	-33516	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	140.264036730732	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTAGGATGGAGGGCCT	NA	False	NA	NA	False	NA	NA	NA	4587749	4599869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4587823_4596561_4596721_4597062_4597234_4599739
94073	chr8	-	4998	4	ISM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	12186	6	1058	-4	3prime_fragment	FALSE	canonical	3	159	junction_3	165.724671267336	23	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCTGATCTGTCTCTGAA	5173	False	NA	NA	False	NA	NA	NA	11673568	11661588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261
94074	chr2	-	1772	6	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5543	17049	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	20.970455407549	25	5	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGCCGGGCAATGATGGT	NA	False	NA	NA	False	NA	NA	NA	177021643	176989263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176990532_177007618_177007703_177008856_177008918_177009124_177009252_177017944_177018063_177021529
94075	chr2	+	7486	25	NNC	ENSMUSG00000027326.14	novel	7800	23	NA	NA	3	-68	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	21.2167632231372	236	114	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGGTAATGAAATAATTT	7245	False	NA	NA	False	NA	NA	NA	118877633	118935914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603_118903101_118906712_118906852_118907421_118907485_118908378_118908478_118911990_118912107_118917040_118917132_118917956_118918074_118919279_118919368_118924486_118924565_118924746_118924787_118925608_118925711_118927898_118928000_118930242_118930312_118931193_118931304_118932462_118932582_118932979_118933103_118934458_118934775_118935423
94076	chr2	+	2959	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	1	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	647	False	NA	NA	False	NA	NA	NA	26279353	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285460_26285632
94078	chr11	-	5685	36	NNC	ENSMUSG00000002052.7	novel	6488	37	NA	NA	-9999	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.6683923882214	3622	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGAGCGCTTGCCGAGG	NA	False	NA	NA	False	NA	NA	NA	78124511	78097857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78098565_78098923_78099064_78099677_78099845_78099927_78100006_78100249_78100363_78102622_78102748_78102908_78103023_78103494_78103734_78104092_78104289_78107030_78107172_78108666_78108810_78109993_78110142_78110708_78110917_78111946_78112075_78112935_78113104_78113173_78113312_78113595_78113732_78113979_78114057_78115191_78115310_78115421_78115562_78116132_78116329_78116489_78116645_78116772_78116924_78117005_78117136_78117500_78117600_78117716_78117866_78119454_78119598_78119779_78119870_78120222_78120340_78120991_78121094_78121753_78122028_78122598_78122684_78122843_78123037_78123330_78123408_78123500_78123660_78124370
94079	chr18	-	8762	49	Fusion	ENSMUSG00000024370.18_ENSMUSG00000003778.15	novel	4468	22	NA	NA	2	-5	intron_retention	FALSE	non_canonical	0	0	junction_10	468.221969262443	2	118	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAAAACTCTGGCCTTT	NA	False	NA	NA	False	NA	NA	NA	34784769	34732887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740190_34740258_34740545_34740827_34741109_34741470_34741674_34743448_34743682_34744184_34744315_34757590_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769800_34770192_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
94080	chr9	-	4702	14	FSM	ENSMUSG00000042790.17	ENSMUST00000058720.13	3964	14	506	-1244	2	1160	multi-exon	FALSE	canonical	3	35	junction_13	9.64395754655542	142	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTGAGTTCTCTCTCTC	9626	False	NA	NA	False	NA	NA	NA	45817669	45773562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
94081	chrX	+	3274	12	NNC	ENSMUSG00000044150.13	novel	630	2	NA	NA	-363	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	221.490331486837	28	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGAAGCTGTTACCTGG	NA	False	NA	NA	False	NA	NA	NA	158315300	158376055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315584_158331234_158331312_158334746_158335371_158336239_158336838_158338602_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
94082	chr17	+	3340	17	NNC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	663.437720796007	48	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1441	False	NA	NA	False	NA	NA	NA	56611341	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620207_56622203_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
94083	chr7	+	3078	28	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	352.6646712819	2	76	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGGTGAGGAGGTCTA	2626	False	NA	NA	False	NA	NA	NA	13012757	13045348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030316_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
94084	chr3	+	2445	5	NIC	ENSMUSG00000015750.16	novel	2863	6	NA	NA	48	22	intron_retention	FALSE	canonical	3	313	junction_3	16.8374582404827	26	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGGGACTTGGCTTTAAG	NA	False	NA	NA	False	NA	NA	NA	95801414	95804779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
94085	chr7	+	6142	17	FSM	ENSMUSG00000030779.17	ENSMUST00000071590.6	5728	17	-414	0	-60	0	multi-exon	FALSE	canonical	3	56	junction_15	18.1597726789186	238	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTGCAAATGTATATTA	7506	False	NA	NA	False	NA	NA	NA	122569726	122601780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052_122589157_122589267_122589606_122591191_122591289_122591446_122591526_122591622_122591678_122593892_122593962_122596165_122596529_122597747_122599503_122599806
94086	chr17	-	3385	11	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACGGCCGCTACCAGGT	4651	False	NA	NA	False	NA	NA	NA	36163888	36152544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36152570_36155321_36155461_36156728_36157111_36157192_36157268_36158212_36159557_36159682_36159748_36159896_36159990_36161184_36161686_36161762_36161895_36162001_36162048_36163305
94087	chr2	-	4631	13	Antisense	novelGene_ENSMUSG00000026781.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	120	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCCACCCGCTCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	23005434	22959085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_22959296_22959461_22959631_22965500_22965622_22968154_22968227_22970348_22970464_22977494_22977629_22979599_22979799_22980485_22980593_22984298_22984528_22989571_22989775_23000254_23000296_23000662_23000773_23002513
94088	chr10	+	3090	6	NIC	ENSMUSG00000025393.13	novel	1916	10	NA	NA	24	-3	intron_retention	FALSE	canonical	3	9425	junction_2	793.791660324042	39	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTATGTCTGTTTATG	NA	False	NA	NA	False	NA	NA	NA	127919198	127926138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_127919323_127919760_127921082_127921310_127922290_127924189_127924403_127924825_127925028_127925887
94089	chr7	+	2958	6	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	6	3404	intron_retention	FALSE	non_canonical	0	0	junction_4	192.803941868417	97	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATTTTCTCCATTTCGT	NA	False	NA	NA	False	NA	NA	NA	42827017	42844937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838466_42838911_42838970_42840979_42844729
94090	chr4	-	3773	6	FSM	ENSMUSG00000028413.14	ENSMUST00000030121.13	3983	6	208	2	208	-2	multi-exon	FALSE	canonical	3	127	junction_2	16.0872620417522	165	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGCTTCTTTTCTTTTT	-7	True	NA	NA	False	NA	NA	NA	40853797	40804603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_40807318_40807732_40807838_40809678_40809802_40812684_40812873_40823438_40823675_40853390
94091	chr3	+	3719	15	NNC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	10423	43326	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	132	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCGGGAGGCTGGCGAG	NA	False	NA	NA	False	NA	NA	NA	108585589	108629482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108587119_108589320_108589540_108589987_108590142_108594135_108594314_108597079_108597151_108604262_108604397_108604845_108604952_108606232_108606389_108607978_108608096_108608202_108608326_108609059_108609202_108609712_108609850_108610179_108610409_108618598_108618899_108629358
94092	chr10	-	3748	5	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-5757	1395	intron_retention	FALSE	canonical	3	87	junction_2	16.4069345095298	4	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGCCTAGAACCAAGC	9303	False	NA	NA	False	NA	NA	NA	62656077	62647005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251
94093	chr2	+	3373	5	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	16	3479	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.0746772020624	127	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTTTTTTTTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	150023690	150038678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775_150035244_150037061
94094	chr3	+	5288	1	Antisense	novelGene_ENSMUSG00000099370.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	90	76	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGTGGTAAGCAAAGTCA	245	False	NA	NA	False	NA	NA	NA	75557844	75563132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_75557800_75563100
94096	chr18	-	6372	33	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	0	6313	intron_retention	FALSE	non_canonical	0	0	junction_1	544.527945649946	49	18	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGCACCGCGAACGGATT	NA	False	NA	NA	False	NA	NA	NA	34784775	34757690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
94097	chrX	-	983	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-189	-44	189	mono-exon	FALSE	NA	NA	NA	NA	NA	120	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGAGACCATTAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	68649895	68648912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68648900_68649900
94098	chr2	-	2351	10	NNC	ENSMUSG00000074656.13	novel	2312	10	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	766	junction_1	3933.41529418687	155	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGCTCCATTGCTTT	3746	False	NA	NA	False	NA	NA	NA	154734741	154713337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
94099	chr12	+	3904	2	Genic_Genomic	ENSMUSG00000079034.3	novel	1873	2	NA	NA	-22538	-2	multi-exon	FALSE	non_canonical	0	0	junction_1	0	206	51	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAATGCAGTCTGATGGT	NA	False	NA	NA	False	NA	NA	NA	87538547	87565034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_87538932_87561514
94100	chr14	+	2347	3	Antisense	novelGene_ENSMUSG00000095518.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	13	27	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	41410391	41441913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_41410457_41436787_41437244_41440087
94101	chr19	-	4975	13	Antisense	novelGene_ENSMUSG00000024759.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCGTAGAGGAAACGGAGGA	NA	False	NA	NA	False	NA	NA	NA	7514695	7471629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_7471725_7486710_7486923_7487341_7487489_7494239_7494346_7495908_7495960_7498149_7498207_7498469_7498568_7499433_7499571_7506304_7506425_7506962_7507028_7507882_7507955_7509378_7509809_7511310
94102	SIRV3	+	791	5	FSM	SIRV3A	SIRV307	779	5	-1	-11	-1	11	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	3	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTAAGACGGTGAAGCTGC	NA	False	NA	NA	False	NA	NA	NA	1962	8950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
94103	chr13	-	3688	2	ISM	ENSMUSG00000095432.10	ENSMUST00000181892.9	5293	4	8448	641	7756	-641	3prime_fragment	FALSE	canonical	3	55	junction_1	0	1	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTAATTCCTAAACTGAAA	NA	False	NA	NA	False	NA	NA	NA	67693501	67687400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_67691030_67693442
94104	chr8	+	1529	5	NNC	ENSMUSG00000058748.10	novel	2364	4	NA	NA	-17	167	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	82.7435798113666	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGCAATGTGGTAAAGTCT	NA	False	NA	NA	False	NA	NA	NA	4663149	4679547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167_4678597_4678764
94105	chr19	+	3710	18	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	39	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	222.102551206858	2	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTCCAGGCTCAGCTAT	3508	False	NA	NA	False	NA	NA	NA	8919277	8929659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8927079_8927576_8927754_8928275_8928395_8928499_8928649_8928853
94106	chr16	-	564	1	Intergenic	novelGene_3757	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
94107	chr7	-	571	6	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	946	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5717.64243722883	51	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACAAGGCCTGACTGG	9385	False	NA	NA	False	NA	NA	NA	99131895	99128097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128105_99128609_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776
94108	chrX	-	664	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	408	-73	-408	mono-exon	FALSE	NA	NA	NA	NA	NA	5	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGGGCTGCCCAGAACAT	NA	False	NA	NA	False	NA	NA	NA	79238531	79237867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237900_79238500
94109	chr9	-	4614	28	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.566557723732531	2	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGGAGCGCGCTGGGGT	6746	False	NA	NA	False	NA	NA	NA	72656569	72569729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569895_72577232_72577399_72578511_72578584_72584594_72584674_72584772_72584813_72593341_72593395_72616391_72616444_72617758_72617799_72625594_72625667_72628582_72628699_72628776_72628944_72632298_72632364_72633691_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648968_72649932_72650041_72650819_72650917_72653686_72653759_72654404
94110	chr14	+	5232	2	Antisense	novelGene_ENSMUSG00000095518.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	59	71	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	41410350	41441913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_41410457_41436787
94111	chr19	-	3901	18	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCTAAGAGCAGCATGAAA	NA	False	NA	NA	False	NA	NA	NA	10607186	10590333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602695_10603258_10603354_10603954_10604125_10604487_10605229_10605788_10605910_10606439
94112	chr4	+	2658	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-8	0	multi-exon	FALSE	non_canonical	0	0	junction_1	45.145985425063	13	115	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576865	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147641551_147641685_147661528_147661587_147665698_147665826_147667290_147667587_147667754
94113	chr8	+	2226	17	ISM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	1439	1100	-151	-1100	3prime_fragment	FALSE	canonical	3	978	junction_12	68.5877346451244	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTGGCTCAATGGGG	3258	False	NA	NA	False	NA	NA	NA	106939006	106978326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
94114	chr1	+	4427	31	Antisense	novelGene_ENSMUSG00000104503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACGTAGGCAGAGAGAGCAA	NA	False	NA	NA	False	NA	NA	NA	84720876	84827705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84720939_84721534_84721740_84722397_84722472_84722732_84722907_84724898_84725047_84726876_84727068_84728075_84728223_84729259_84729435_84729600_84729702_84731991_84732198_84735135_84735257_84735442_84735670_84736692_84736848_84738482_84738647_84738735_84738852_84739585_84739751_84739839_84739908_84741047_84741210_84741558_84741653_84743700_84743797_84743879_84743916_84746303_84746451_84754035_84754134_84755144_84755229_84760547_84760687_84763813_84763916_84771243_84771303_84771390_84772049_84792543_84792691_84822070_84822117_84827645
94117	chr7	+	698	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	63	0	17	0	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656279	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
94118	chr8	+	3241	6	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	62	-794	multi-exon	FALSE	non_canonical	0	0	junction_5	443.975224533982	3	44	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTACGTGTGGCACCAT	NA	False	NA	NA	False	NA	NA	NA	20698046	20726472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149_20724733_20725482
94119	chr12	+	6361	1	Intergenic	novelGene_4403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	79	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTCATCAATAAATTCCTT	NA	False	NA	NA	False	NA	NA	NA	73121004	73127365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_73121000_73127400
94120	chr1	-	749	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	29	5	29	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTACTCCCTTAGTATA	NA	False	NA	NA	False	NA	NA	NA	24653023	24652274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653000
94121	chr9	-	5358	4	FSM	ENSMUSG00000039952.16	ENSMUST00000080435.9	4364	4	84	-1078	5	-232	multi-exon	FALSE	canonical	3	204	junction_3	135.056366833342	605	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATTGCCTCTGACTGTC	NA	False	NA	NA	False	NA	NA	NA	108140930	108082064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108086861_108095211_108095610_108130299_108130357_108140823
94122	chr4	+	3374	5	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078497.10	novel	585	4	NA	NA	-11	2151	multi-exon	FALSE	non_canonical	0	0	junction_2	216.36239853542	3	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	4099	False	NA	NA	False	NA	NA	NA	147314729	147477612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147447267_147447311_147469673_147469759_147472778_147472906_147474656
94123	chr5	+	1533	13	NNC	ENSMUSG00000029017.14	novel	1615	13	NA	NA	22	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	107.740009848813	55	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCGTTAGTCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	21942160	21962146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953897_21961444_21961486_21961584_21961674_21961812_21961889_21961977
94124	chr17	-	1601	8	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	30	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	317.91854944566	115	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050153	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006388_7014681_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
94125	chr15	-	718	5	Antisense	novelGene_ENSMUSG00000003970.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTAGGCGCGCGGCGCCC	NA	False	NA	NA	False	NA	NA	NA	76790514	76788603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76788649_76788736_76788879_76789015_76789236_76790054_76790172_76790320
94126	chr2	-	1019	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	172	-191	172	191	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	28824449	28823430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824400
94127	chr1	-	2632	2	NNC	ENSMUSG00000038633.6	novel	2048	3	NA	NA	2506	-196	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	0	4	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCTTAGTGGAATTTC	NA	False	NA	NA	False	NA	NA	NA	182107283	182103532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_182104459_182105577
94128	chr4	-	3109	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105702.9	6425	7	231	3085	0	-1	multi-exon	FALSE	canonical	3	41	junction_1	393.959811825183	41	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTAGTGTCTGGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	148711222	148699923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
94129	chr4	-	2538	10	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	1920	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	437.03456370926	7	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGAACATTGCCACTCA	5719	False	NA	NA	False	NA	NA	NA	135067853	135047804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052528_135054389_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813
94131	chr11	-	3624	11	FSM	ENSMUSG00000033352.12	ENSMUST00000046963.10	3695	11	48	23	36	-23	multi-exon	FALSE	canonical	3	217	junction_10	28.4703354388388	214	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGGAGAGTTATCTCCTT	NA	False	NA	NA	False	NA	NA	NA	65679075	65579091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65678961
94132	chr13	+	2593	1	Genic_Genomic	ENSMUSG00000074867.5	novel	NA	NA	NA	NA	15281	1285	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAGTATCCCTAATCCCT	NA	False	NA	NA	False	NA	NA	NA	62382650	62385243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_62382600_62385200
94133	chrM	+	1134	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	10	0	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATCCATGTCTTGATAG	-2	True	NA	87	True	NA	NA	NA	14144	15278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
94134	chr5	-	2263	10	ISM	ENSMUSG00000043940.16	ENSMUST00000174598.8	10581	65	125882	7440	-4163	-7440	internal_fragment	FALSE	canonical	3	25	junction_8	3.15445990368409	6	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTGATTTAACCATGTT	NA	False	NA	NA	False	NA	NA	NA	102003542	101991463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_101992081_101992413_101992526_101992786_101993111_101994968_101995066_101996188_101996372_101997134_101997315_101999105_101999265_102000088_102000244_102000373_102000522_102003254
94135	chr4	+	2625	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-8	0	multi-exon	TRUE	canonical	0	0	junction_1	22.0544780033444	294	10	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	904	False	NA	NA	False	NA	NA	NA	145237338	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145245504_145245556_145343640_145343746_145347127_145347255_145348721_145349454_145350462
94136	chr1	-	5381	10	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.0846056571511	200	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTAGTGGGGGTTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	171854867	171828531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171829631_171829743_171831331_171831534_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
94137	chr17	+	4787	11	NNC	ENSMUSG00000116895.2	novel	1684	12	NA	NA	-70	1312	intron_retention	FALSE	canonical	0	0	junction_7	84.0755017826239	205	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCCTGCAGCTGCCTGCGG	NA	False	NA	NA	False	NA	NA	NA	15230526	15244023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15230721_15231134_15231304_15231891_15232145_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527
94138	chr4	+	1102	2	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	473	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCGACCTTCACCATTTT	NA	False	NA	NA	False	NA	NA	NA	91739724	91740889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739732_91739794
94139	chr3	+	1567	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	326	622	252	-7	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACCAATGAGTTAGCTG	NA	False	NA	NA	False	NA	NA	NA	135145223	135171812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
94140	chr13	+	6860	19	NNC	ENSMUSG00000021488.9	novel	9905	21	NA	NA	-16108	-301	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_2	56.9407315862753	1	77	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCTGTCTGTGGAATTGA	NA	False	NA	NA	False	NA	NA	NA	55395129	55463267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55395891_55408156_55408378_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459931
94141	chr17	+	13273	7	Antisense	novelGene_ENSMUSG00000117223.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	68	109	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	57675591	58011076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_57679764_57700617_57702018_57876180_57877761_57961811_57964138_57975464_57975471_57998904_57999102_58007484
94142	chr2	-	3086	2	FSM	ENSMUSG00000027342.15	ENSMUST00000135181.2	824	2	-230	-2032	117	-135	multi-exon	FALSE	canonical	3	2527	junction_1	0	1	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAAAGTCATAGAGCAGT	8342	False	NA	NA	False	NA	NA	NA	132095117	132091216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_132093921_132094735
94143	chr15	-	1863	13	Antisense	novelGene_ENSMUSG00000033047.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	93	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTCCAGAAGCCCGTGGG	NA	False	NA	NA	False	NA	NA	NA	78978600	78959452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_78959491_78959968_78960018_78961028_78961239_78962270_78962353_78963191_78963255_78965786_78965857_78966053_78966125_78968308_78968482_78969754_78969912_78970633_78970804_78973662_78974160_78977534_78977616_78978398
94145	chr4	+	4915	16	NNC	ENSMUSG00000028522.17	novel	4703	14	NA	NA	-13	-13	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	54.2596228024732	17	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTTTTGTAAACATACT	2871	False	NA	NA	False	NA	NA	NA	102971945	103022933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_102972021_102972756_102972858_102973140_102973291_102975435_102975513_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
94146	chr15	+	657	5	FSM	ENSMUSG00000022338.9	ENSMUST00000060652.5	3000	5	-19	2362	0	0	multi-exon	FALSE	canonical	3	627	junction_1	138.867742834684	856	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTCTGTTTATTACTG	9616	False	NA	NA	False	NA	NA	NA	44291487	44299290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297294_44297370_44299007
94147	chr16	-	4205	1	Intergenic	novelGene_3851	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	147	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTTTGTTGCGTCT	NA	False	NA	NA	False	NA	NA	NA	82008776	82004571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_82004600_82008800
94148	chr2	-	3548	3	NNC	ENSMUSG00000078905.9	novel	625	4	NA	NA	3800	3027	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	20	2	120	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTATAAAAAAGGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	174905756	174900314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_174903706_174905392_174905454_174905660
94149	chr17	+	798	3	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2288	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCTTAGTCACTGAGACC	NA	False	NA	112	True	NA	NA	NA	45878699	45879896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879491_45879785
94150	chr4	-	2816	13	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	1430	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	354.349981970117	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAATTTAAGAACATTGCC	5229	False	NA	NA	False	NA	NA	NA	135068343	135047809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048154_135048229_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157
94151	chr17	+	918	4	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1955.35316503183	107	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3039	False	NA	NA	False	NA	NA	NA	35816917	35821669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35821466
94152	chr4	-	1586	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	294	0	294	0	multi-exon	FALSE	canonical	3	980	junction_1	0	9	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	NA	False	NA	NA	NA	127224343	127219027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_127220565_127224294
94153	chr10	+	1580	1	Intergenic	novelGene_3520	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	80	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGCGCAGGCCCGAGCAA	NA	False	NA	NA	False	NA	NA	NA	99174900	99176480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_99174900_99176500
94154	chrX	+	6828	46	NIC	ENSMUSG00000079487.12	novel	6940	46	NA	NA	-89	-26	combination_of_known_junctions	FALSE	canonical	2	58	junction_41	20.6676941202185	183	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACACAGAGCTTCTTTGCA	NA	False	NA	NA	False	NA	NA	NA	100317745	100341045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337619_100337693_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
94155	chr2	-	3219	14	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	187	5	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_9	495.341242726226	18	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTGGTTATGGTAC	NA	False	NA	NA	False	NA	NA	NA	103609526	103595357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605844_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508
94157	chr18	-	681	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	16	412	16	117	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATGGCATGTGCTTTTC	NA	False	NA	NA	False	NA	NA	NA	36587561	36537140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
94158	chr10	-	5283	1	Intergenic	novelGene_3470	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1072	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCACACTGCCAAGTCAA	NA	False	NA	NA	False	NA	NA	NA	74555811	74550528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74550500_74555800
94159	chr2	-	5061	33	Antisense	novelGene_ENSMUSG00000051329.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAACTGAGAGTTGCAAG	7403	False	NA	NA	False	NA	NA	NA	90567213	90515403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_90515537_90517637_90517715_90519447_90519559_90520406_90520568_90523394_90523475_90524174_90524274_90526983_90527069_90528203_90528271_90530457_90530542_90530754_90530926_90532354_90532456_90532723_90532891_90533402_90533529_90534152_90534316_90537266_90537401_90538476_90538547_90539165_90539327_90540376_90540445_90542286_90542386_90544115_90544236_90547935_90548032_90548155_90548251_90548340_90548438_90548529_90548636_90551531_90551694_90552372_90552435_90553680_90553790_90553953_90554080_90555945_90556046_90560020_90560163_90563122_90563249_90563447_90563554_90565756
94160	chr6	-	2398	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	162	-4	162	4	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	136539	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGGATTTGAATCTTAA	8647	False	NA	NA	False	NA	NA	NA	145021748	144944879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
94161	chr1	+	1951	12	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-45	-428	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	199.286827636504	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTCTTAGTATTTGTGG	NA	False	NA	NA	False	NA	NA	NA	167177759	167195673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973_167195238_167195493
94162	chr12	+	2429	6	NIC	ENSMUSG00000079179.10	novel	823	8	NA	NA	-11	1702	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	72.3143139357624	45	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTACAAAAAATACAAGACT	NA	False	NA	NA	False	NA	NA	NA	3285514	3293112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063_3288113_3288833_3289010_3291521
94163	chr2	+	2643	12	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	417	-1516	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	61.3417469375903	1	111	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGGTTAGATTTAAGTTC	NA	False	NA	NA	False	NA	NA	NA	152069249	152122256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152069371_152092321_152092532_152096129_152096242_152099297_152099390_152100539_152100656_152102678_152102763_152105102_152105214_152114547_152114640_152116012_152116114_152117317_152117467_152118866_152118954_152120888
94164	chr2	-	3588	25	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	422	-1559	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	88.8387662503757	1	83	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGGGTTATGTCTTGA	NA	False	NA	NA	False	NA	NA	NA	62241781	62161975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189640_62190603_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204869_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216575_62216867_62217408_62217505_62241558
94165	chr5	-	4173	19	NNC	ENSMUSG00000041890.18	novel	5032	19	NA	NA	7	-791	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.1312745647761	25	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAGAAATCAAAGAACACG	NA	False	NA	NA	False	NA	NA	NA	114911488	114866262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114868456_114869048_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
94166	chr8	-	9922	4	Antisense	novelGene_ENSMUSG00000110669.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	200	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCGCTCCGGCGGACACT	NA	False	NA	NA	False	NA	NA	NA	20045697	19834741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_19834861_20030544_20030923_20035859_20040812_20041224
94167	chr4	-	1064	9	NNC	ENSMUSG00000059291.16	novel	833	6	NA	NA	-11298	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4830.21352885926	119	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTACAGTTGTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	135792037	135777257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658_135780675_135787675_135787889_135791624_135791681_135791829
94168	chr11	+	1820	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	0	-73	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	477	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
94169	chr17	+	4358	15	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-27	0	intron_retention	FALSE	canonical	3	1413	junction_5	323.483904908256	12	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	472	False	NA	NA	False	NA	NA	NA	56610372	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
94170	chr11	-	1864	4	NIC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	22	0	intron_retention	FALSE	canonical	3	1704	junction_3	291.466407441178	52	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1869	False	NA	NA	False	NA	NA	NA	59119074	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_59103522_59103646_59103772_59103968_59104350_59118998
94171	chr2	+	1056	2	Antisense	novelGene_ENSMUSG00000083773.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCACATTTCTTACCTG	NA	False	NA	NA	False	NA	NA	NA	28823518	28824694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_28824125_28824244
94172	chr16	-	3328	5	NIC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	6	combination_of_known_splicesites	FALSE	canonical	3	20	junction_1	532.568305478274	1	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCTCTGTAGTCTCCT	8675	False	NA	NA	False	NA	NA	NA	33787373	33775157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_33777306_33780546_33780723_33781938_33782611_33784141_33784296_33787195
94173	chr4	+	10280	13	NIC	ENSMUSG00000060206.12	novel	4823	11	NA	NA	-22	-4	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	9.10585891976516	195	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTATGTGCATCTGTT	1	True	NA	NA	False	NA	NA	NA	54945025	55083559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_54945102_55007532_55007783_55008255_55013850_55014682_55014848_55016996_55017101_55020088_55020208_55023414_55023607_55050185_55050454_55051190_55051328_55060013_55060238_55072972_55073106_55079263_55079388_55080665
94174	chr2	+	4689	3	Antisense	novelGene_ENSMUSG00000095362.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	98	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCAAACCATTACTTTTCC	NA	False	NA	NA	False	NA	NA	NA	177373567	177477595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177373671_177472590_177473685_177474103
94175	chr5	+	2364	16	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	102.02866699555	6	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9204	False	NA	NA	False	NA	NA	NA	110987870	111022006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997544_111003590_111003700_111003936_111004044_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
94178	chr17	+	2419	2	Intergenic	novelGene_226	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCAGGGGGCTTCCCGGTT	NA	False	NA	NA	False	NA	NA	NA	40154060	40156521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154395_40154436
94179	chr8	-	1720	9	NIC	ENSMUSG00000003813.16	novel	2074	9	NA	NA	2	-23	combination_of_known_junctions	FALSE	canonical	2	32	junction_1	435.873960423194	6	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTAATAATGGTTCATGC	NA	False	NA	NA	False	NA	NA	NA	85567263	85561562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85562304_85562448_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
94181	chr12	+	5081	3	Intergenic	novelGene_4387	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605043	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605468_68605536_68605790_68605868
94182	chr4	-	1715	3	ISM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	28610	76	28589	-76	3prime_fragment	FALSE	canonical	3	1798	junction_1	29	2	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCTTGTGTCTCAACT	NA	False	NA	NA	False	NA	NA	NA	137056421	137047082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_137048504_137056023_137056222_137056325
94183	chr7	-	1124	1	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAATGGCAGCCCTGGTG	NA	False	NA	NA	False	NA	NA	NA	51397635	51396511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51396500_51397600
94184	chr2	+	3583	5	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-51	2229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.2441075102934	6	71	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	176766061	176781369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176766152_176770405_176770448_176776035_176776163_176776368_176776430_176778106
94185	chrUn_JH584304v1	-	4240	7	Intergenic	novelGene_4627	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	325.282782957981	4	112	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTCGAGAGAATGGCCAA	NA	False	NA	NA	False	NA	NA	NA	60310	52206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54879_55138_55702_56985_57152_57410_57500_58563_58836_59591
94186	chr17	+	2499	9	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	2442	-2	intron_retention	FALSE	canonical	0	0	junction_6	749.489326141473	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGGTGGCGCACGTCTTT	8605	False	NA	NA	False	NA	NA	NA	56622104	56630484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625387_56627224_56627283_56627396_56627543_56629020
94188	chr4	+	1720	9	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	274	-701	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	189.08397605297	1	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTCTTTTGTTTAAAAGA	5322	False	NA	NA	False	NA	NA	NA	89055632	89098617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090471_89090572_89090622_89095039_89095163_89097704
94189	chr9	+	528	5	FSM	ENSMUSG00000009927.10	ENSMUST00000080300.9	1280	5	510	242	-11	-4	multi-exon	FALSE	canonical	3	5317	junction_4	3059.10970504492	57	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCAAATGAATGGGTGCAT	NA	False	NA	NA	False	NA	NA	NA	44318945	44321482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250_44321350_44321442
94190	chr8	-	1981	1	Intergenic	novelGene_1766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	174	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCGGGACCCACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	118188240	118186259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_118186300_118188200
94192	chrM	-	2527	2	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	1	True	NA	7	True	NA	NA	NA	3702	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2603_2684
94193	chrM	+	1513	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-269	134	-269	-134	mono-exon	FALSE	NA	NA	NA	NA	NA	83	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGCGGCAAACTAACCAACC	20	False	NA	NA	False	NA	NA	NA	9897	11410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11400
94194	chr13	-	5648	20	Genic_Genomic	ENSMUSG00000113380.2	novel	1209	2	NA	NA	-29487	36732	multi-exon	TRUE	non_canonical	0	0	junction_1	140.453736431475	3	247	15	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCTCCCGCCTCCCGTCG	NA	False	NA	NA	False	NA	NA	NA	13686477	13612195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_13612508_13638304_13638604_13639892_13640118_13642811_13643192_13647362_13647512_13650741_13650993_13652719_13652919_13656597_13656849_13658232_13658382_13661227_13661349_13663589_13663733_13664624_13664751_13674141_13674384_13675045_13675202_13676976_13677109_13680918_13681092_13682193_13682351_13683300_13683427_13684016_13684132_13684535
94195	chr11	+	4148	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-10	-218	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	556.187902061884	1	116	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332170	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335802_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
94196	chr10	+	3331	12	NIC	ENSMUSG00000037608.17	novel	5437	13	NA	NA	4	-1	intron_retention	FALSE	canonical	3	695	junction_10	114.656367658443	31	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCATATTTGTAACTATC	2797	False	NA	NA	False	NA	NA	NA	20188221	20216007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
94197	chr4	-	1049	1	FSM	ENSMUSG00000095042.2	ENSMUST00000119266.2	1002	1	-73	26	-73	-26	mono-exon	FALSE	NA	NA	NA	NA	NA	7	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCCTACATGGCCTCCAAG	NA	False	NA	NA	False	NA	NA	NA	57372027	57370978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_57371000_57372000
94198	chr5	-	4857	3	Antisense	novelGene_ENSMUSG00000106757.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	270	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCCGCCGCCGCCGCCGC	8790	False	NA	NA	False	NA	NA	NA	130015528	129971006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129971205_130007357_130007469_130010980
94199	chr11	-	7874	46	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	-1	-318	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_20	118.233721245278	4	56	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAGCTACAGTACATCAT	NA	False	NA	NA	False	NA	NA	NA	62329342	62207833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224845_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62233957_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244055_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264449_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163
94200	chr7	+	4232	22	Fusion	ENSMUSG00000030513.15_ENSMUSG00000108793.2	novel	619	7	NA	NA	-208	1	multi-exon	FALSE	canonical	1	3	junction_1	40.8302164574683	206	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGGCCAGTGGGTGAAA	NA	False	NA	NA	False	NA	NA	NA	65511273	65700135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_65511515_65559949_65560055_65576941_65577047_65577563_65577708_65578854_65578932_65581424_65581514_65602666_65602840_65608844_65609058_65612651_65612753_65618715_65618820_65620289_65620408_65629894_65630084_65633460_65633598_65674975_65675156_65675313_65675353_65681496_65681600_65683497_65683695_65684928_65685017_65688728_65688833_65693262_65693393_65697304_65697418_65698653
94201	chr17	+	3520	15	NNC	ENSMUSG00000058392.14	novel	4874	16	NA	NA	-2	-1032	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	181.227236431199	22	162	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTCTAAGTCTTGAACC	NA	False	NA	NA	False	NA	NA	NA	32255381	32280798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272933_32274873_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
94202	chr11	-	2440	16	NIC	ENSMUSG00000020516.16	novel	5531	15	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	8	junction_15	86.0969995605732	152	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAACCACAGCTGTGGCTTG	NA	False	NA	NA	False	NA	NA	NA	86435591	86392862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86434756_86434872_86435391
94203	chrUn_JH584304v1	-	4942	4	Intergenic	novelGene_4597	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_3	301.719884808557	30	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACCCTGGATTCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	59091	50802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_58563
94205	chr17	-	9518	14	Fusion	ENSMUSG00000116560.2_ENSMUSG00000116868.2	novel	985	8	NA	NA	1456	-2798	multi-exon	FALSE	non_canonical	0	0	junction_10	16.6942572417005	324	57	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCCCCCCAAGCCCCAC	NA	False	NA	NA	False	NA	NA	NA	6848646	6781987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_6783818_6785940_6786085_6791132_6791227_6792929_6793075_6795963_6796109_6803306_6803476_6809624_6809760_6812795_6812921_6815627_6815707_6817281_6817358_6819117_6819159_6831826_6831892_6841677_6841897_6842395
94206	chr1	-	2998	13	NNC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	6	-3255	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	41.7321984669977	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGACCCCCTAGCATCAA	1515	False	NA	NA	False	NA	NA	NA	118981063	118765116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794492_118795704_118795912_118929769_118929937_118981031
94207	chr16	+	2639	2	NIC	ENSMUSG00000022503.11	novel	510	5	NA	NA	-679	184	intron_retention	FALSE	canonical	3	845	junction_1	0	6	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTTAGGGCCTGCTTCC	NA	False	NA	NA	False	NA	NA	NA	10238420	10241394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_10240770_10241104
94209	chr17	+	1477	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	274	98	274	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	42	True	NA	NA	NA	40157517	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157500_40159000
94211	chr2	+	4172	6	NNC	ENSMUSG00000078887.11	novel	599	6	NA	NA	18	2705	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	83.5353817253504	57	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTTCCAGTCCCGACT	NA	False	NA	NA	False	NA	NA	NA	175661096	175675746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349_175670411_175671567_175673573_175673900
94212	chr7	+	2959	27	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	355.214480170892	11	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGGTGAGGAGGTCTA	2622	False	NA	NA	False	NA	NA	NA	13012753	13045348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039945_13041452_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
94213	chr11	-	3701	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	-45	2373	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10.1068669888635	81	60	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATACTGGACTCGGGTGG	2845	False	NA	NA	False	NA	NA	NA	95805762	95754395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95755498_95755936_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
94214	chr9	+	847	2	FSM	ENSMUSG00000063856.9	ENSMUST00000082429.8	1072	2	219	6	-3	-6	multi-exon	FALSE	canonical	3	8868	junction_1	0	5	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATTGTTTGTGTGTCCT	NA	False	NA	NA	False	NA	NA	NA	108216471	108217536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108216758_108216975
94215	chr2	+	832	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11375	-221	multi-exon	FALSE	canonical	0	0	junction_1	0	29	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACGTACTGAAGGAGGCAT	NA	False	NA	NA	False	NA	NA	NA	11413659	11425810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414298_11425616
94216	chrX	-	13026	6	Intergenic	novelGene_3898	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	233	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAGACACTGGCCAGCAC	NA	False	NA	NA	False	NA	NA	NA	30144490	29454638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_29458320_29803936_29807218_30001814_30002202_30002420_30003127_30139106_30139804_30140216
94217	chrX	-	1575	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	24	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	3	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAATGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	135642001	135633700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634822_135635006_135635251_135636294_135636372_135640553_135640644_135641958
94218	chr1	-	3642	2	Intergenic	novelGene_411	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	59	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGACCGTTTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	90555971	90550816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_90551774_90553286
94219	chr16	+	6175	2	ISM	ENSMUSG00000050240.17	ENSMUST00000090190.14	6354	3	21401	15	21309	-15	3prime_fragment	FALSE	canonical	3	80	junction_1	0	256	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATTGAAAACTGATGTGG	2493	False	NA	NA	False	NA	NA	NA	17072836	17081279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_17072931_17075198
94221	chr15	+	5229	7	ISM	ENSMUSG00000022412.15	ENSMUST00000229138.2	4097	8	-51	-15	11	-7	intron_retention	FALSE	canonical	3	52	junction_1	78.4488509936393	291	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACAACTCTGACGTGTCT	2764	False	NA	NA	False	NA	NA	NA	80118229	80137565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_80118383_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
94222	chr6	+	4470	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	387	10617	0	2808	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	7360	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATGCATTAAATCCTGC	5872	False	NA	NA	False	NA	NA	NA	67243994	67264103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
94223	chr17	-	704	4	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4596.41606761906	465	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTCCTGCTCTCCTTG	NA	False	NA	NA	False	NA	NA	NA	45884192	45878704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45882434_45882546_45882690_45882838_45884092
94224	chr18	-	4580	26	NNC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	-85	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	373.16320075806	4	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60981603	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948089_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981379
94225	chr13	-	1169	1	ISM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	39647	370	39608	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTAGGGTTGTTTGGTGT	NA	False	NA	NA	False	NA	NA	NA	59783978	59782809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_59782800_59784000
94226	chr8	-	5231	13	ISM	ENSMUSG00000004319.16	ENSMUST00000004430.14	4175	14	7339	-1527	7339	-7	3prime_fragment	FALSE	canonical	3	31	junction_1	80.1138079373476	3	55	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTGTGGTTTGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	61428934	61363429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_61366210_61367786_61367863_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765
94227	chr15	+	1744	10	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5941.15106276699	16	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	103148880	103153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149621_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151150_103152051_103152208_103152385_103152460_103152682
94228	chr14	+	2964	7	NNC	ENSMUSG00000040840.8	novel	968	6	NA	NA	-5178	-1250	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	19	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTTGTCCGCAGCTCC	NA	False	NA	NA	False	NA	NA	NA	54882789	54890814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54882814_54883061_54883198_54883904_54884061_54884159_54884296_54885546_54885590_54886990_54889316_54890670
94229	chr13	-	2304	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9911	350	intron_retention	FALSE	canonical	3	25	junction_5	11.6961532137708	97	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGCTTGTCTGAGATTC	NA	False	NA	NA	False	NA	NA	NA	66846327	66830552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66841838_66841917_66846221
94230	chr5	+	381	1	Intergenic	novelGene_951	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3099	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197794	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
94231	chr7	-	5618	3	NNC	ENSMUSG00000097415.3	novel	656	3	NA	NA	13	-5105	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGTCAGGCCCGAGGTTT	NA	False	NA	NA	False	NA	NA	NA	75431834	75424614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_75429781_75430087_75430505_75431799
94232	chr8	-	5132	16	NNC	ENSMUSG00000038506.14	novel	2748	7	NA	NA	-25900	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	18.9060836769544	107	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATGTCCTTTATTCT	NA	False	NA	NA	False	NA	NA	NA	13364031	13305962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330908_13331126_13337803_13338387_13341655_13342170_13342707_13342890_13344845_13345036_13345977_13346107_13348210_13348304_13353725_13353913_13358346_13358465_13360142_13360347_13363810
94233	chr19	-	3272	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAACAAGACCGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	22703330	22699844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765
94234	chr11	+	4146	8	NIC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	3	0	intron_retention	FALSE	canonical	3	336	junction_3	495.280419436859	1430	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9434	False	NA	NA	False	NA	NA	NA	88861080	88882439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_88861306_88863446_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
94235	chr11	-	1084	11	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7555.64079082641	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	NA	False	NA	NA	NA	33113069	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105112_33105178_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
94236	chr3	-	2217	12	NIC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	8	-6	intron_retention	FALSE	canonical	3	676	junction_11	39.96217219586	177	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGGAACCCAGTGTGTAG	NA	False	NA	NA	False	NA	NA	NA	88821202	88816956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88820235_88820873_88821010_88821099
94237	chr10	-	4633	9	NNC	ENSMUSG00000047090.14	novel	2335	5	NA	NA	804	5468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9.7459927662604	51	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGACCGGAAATGGGCAG	7194	False	NA	NA	False	NA	NA	NA	128638782	128630436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128630522_128630685_128630902_128631425_128631673_128632255_128632383_128633994_128634160_128634303_128634431_128634571_128637099_128637219_128637381_128637804
94238	chr11	-	2868	14	NIC	ENSMUSG00000040667.12	novel	2450	17	NA	NA	0	1	intron_retention	FALSE	canonical	3	678	junction_8	76.514298466512	1197	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTTTGCTTTACAATTA	NA	False	NA	NA	False	NA	NA	NA	70860785	70833901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
94239	chr2	-	3306	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	238.73427813273	13	36	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGACCTAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	127673757	127643044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654946_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659357_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669255_127669418_127671357_127671497_127671597_127671658_127673639
94240	chr4	+	2912	9	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	-8	-1901	multi-exon	FALSE	non_canonical	0	0	junction_2	39.7012279407073	51	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146200120	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146291416_146291510_146293441_146293573_146368115_146368200_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393458_146552638
94241	chr3	+	4028	25	NNC	ENSMUSG00000025437.16	novel	3886	24	NA	NA	44	-5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	139.755441158237	3	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAAACTGAATGTTG	NA	False	NA	NA	False	NA	NA	NA	152052195	152098965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152052277_152062504_152062733_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
94242	chr11	+	935	4	Antisense	novelGene_ENSMUSG00000087523.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	34	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAGAAAATTAGT	1763	False	NA	NA	False	NA	NA	NA	70542677	70545769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_70543042_70543612_70543806_70545171_70545365_70545584
94243	chr2	+	1201	1	Antisense	novelGene_ENSMUSG00000083773.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	275	45	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGGACGAGGCTGGCACT	NA	False	NA	NA	False	NA	NA	NA	28823426	28824627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_28823400_28824600
94244	chr2	+	3605	5	Antisense	novelGene_ENSMUSG00000064405.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCACGCTGCAGCCTAGA	NA	False	NA	NA	False	NA	NA	NA	158196367	158203470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_158196563_158196643_158197962_158199117_158199183_158201100_158202520_158202862
94245	chr7	+	2910	1	NIC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	3730	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	12	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46502140	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46502100_46505000
94246	chr2	+	3663	6	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	9	2234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.4919863296761	1	120	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTCATGATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	176766121	176781374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176766152_176770406_176770448_176770627_176770764_176776035_176776163_176776368_176776430_176778106
94247	chr5	-	3081	15	NNC	ENSMUSG00000106864.4	novel	4718	18	NA	NA	-13	-86	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218.002433987536	6	49	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCTTTTACAAGTCATG	NA	False	NA	NA	False	NA	NA	NA	31337268	31313950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315042_31317139_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331835_31337227
94248	chr6	-	2297	11	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	5663	2	intron_retention	FALSE	canonical	0	0	junction_8	272.751168650109	3	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTTTTTATTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	29565855	29540823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29562856_29562934_29565169_29565262_29565658
94249	chr17	+	1882	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	55	509	-2	2	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	13493	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGGTTCCTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	13135323	13143445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
94250	chr10	-	5921	23	NIC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	2	-5	intron_retention	FALSE	canonical	3	241	junction_22	51.09414418745	124	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCTGTGTAGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	62628063	62579711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
94251	chr7	+	3393	7	NNC	ENSMUSG00000050428.8	novel	4873	2	NA	NA	7291	9080	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	80	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGTTACAAAACCCAATAAA	102	False	NA	NA	False	NA	NA	NA	18872908	18883177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_18875224_18877109_18877228_18878584_18878684_18878807_18878961_18880793_18881080_18882302_18882441_18882893
94252	chr17	+	1660	8	Antisense	novelGene_ENSMUSG00000036775.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12206	55	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCCCCCACATCAAGCC	NA	False	NA	NA	False	NA	NA	NA	26300380	26309136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_26301234_26301848_26302016_26302549_26302655_26302818_26302912_26302983_26303116_26306299_26306480_26307902_26307974_26309077
94253	chr3	-	5879	6	NNC	ENSMUSG00000105837.5	novel	421	3	NA	NA	-106097	-4754	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	196	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTTTTTACTCGTCTACA	NA	False	NA	NA	False	NA	NA	NA	129432134	129326034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_129326143_129326294_129326417_129398688_129398820_129421929_129422080_129426704_129431281_129431342
94254	chr5	-	1892	6	NIC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	6	-8	intron_retention	FALSE	canonical	3	37	junction_5	1639.89482589586	13	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	9712	False	NA	NA	False	NA	NA	NA	142891686	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142891603
94255	chr17	-	2693	11	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	2720	7417	intron_retention	FALSE	non_canonical	0	0	junction_1	0	47	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGCCGGGAAAGCGGTA	NA	False	NA	NA	False	NA	NA	NA	13143849	13135282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138813_13139162_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142104_13142297_13142415_13142580_13143145
94257	chr5	+	2293	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	8	2	intron_retention	FALSE	non_canonical	0	0	junction_7	1142.51473442024	45	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCGCTGTGTGGTCTA	335	False	NA	NA	False	NA	NA	NA	77099202	77115354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114477
94258	chr2	-	6987	19	NNC	ENSMUSG00000086216.2	novel	951	2	NA	NA	1882	28761	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	139	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGGGTTTCTGCCAAA	NA	False	NA	NA	False	NA	NA	NA	32124512	32094032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32094335_32096345_32096705_32102004_32102301_32106054_32106246_32106623_32106765_32107202_32107346_32108686_32108768_32109223_32109415_32109548_32109750_32110101_32110181_32111085_32111191_32111350_32111548_32112299_32112390_32113413_32113559_32113939_32114180_32116240_32116397_32116951_32117049_32119273_32119355_32120620
94259	chr5	+	3254	5	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	251	-1	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	83.3857751657919	9	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCCTTGGTCATGCTAT	NA	False	NA	NA	False	NA	NA	NA	110071516	110091801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110071633_110080792_110081882_110088291_110088419_110088605_110088667_110089940
94260	chr17	+	1922	4	Antisense	novelGene_ENSMUSG00000063888.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	122	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAGCCCCACCTTCA	NA	False	NA	NA	False	NA	NA	NA	47086027	47091162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_47086662_47088971_47089197_47089334_47089446_47090210
94261	chr11	-	1151	12	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5898.47077954872	16	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113069	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102637_33102758_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
94262	chr10	-	3363	13	Antisense	novelGene_ENSMUSG00000064441.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	31	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGGTGCTCGTCCGGCCG	7895	False	NA	NA	False	NA	NA	NA	81018299	81012416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81012562_81013496_81013714_81013886_81014066_81014510_81014724_81014917_81015092_81015177_81015284_81015375_81015638_81015721_81015910_81015984_81016244_81016396_81016505_81016635_81016990_81017059_81017243_81017324
94263	chr5	+	4025	12	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	36	-19	intron_retention	FALSE	canonical	0	0	junction_11	756.922520790166	17	150	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGTTTGTTCACTGTGA	NA	False	NA	NA	False	NA	NA	NA	45650751	45670014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668564_45669222
94264	chr11	-	5649	26	NIC	ENSMUSG00000025153.10	novel	10050	43	NA	NA	-7	2477	intron_retention	FALSE	canonical	3	375	junction_22	64.3626475527538	7	138	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTTGGAGCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	120714928	120702843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120703044_120703125_120703277_120703483_120703688_120703795_120703951_120704035_120704397_120704479_120704867_120705302_120706042_120706116_120706297_120706436_120706617_120706707_120706789_120706865_120707058_120707130_120707564_120707672_120707877_120707950_120708086_120708298_120708394_120708811_120709002_120709258_120709447_120709563_120710027_120710628_120710764_120710854_120710971_120711070_120711194_120711357_120711559_120711724_120711899_120712903_120713057_120713542_120713679_120714855
94265	chr13	+	5003	44	NNC	ENSMUSG00000033991.10	novel	5381	44	NA	NA	55	-2747	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	48.8409079441073	431	63	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAACTCATTGATGTAAGC	NA	False	NA	NA	False	NA	NA	NA	76246907	76333355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_76246949_76247489_76247560_76252823_76252888_76254348_76254498_76256311_76256403_76257137_76257210_76259791_76259936_76260293_76260386_76261156_76261233_76261688_76261830_76266202_76266302_76266396_76266506_76270753_76270895_76271560_76271663_76272879_76273020_76275084_76275172_76275615_76275720_76276742_76276870_76277475_76277659_76278319_76278445_76279326_76279581_76280976_76281080_76282793_76282971_76283065_76283211_76283345_76283425_76283519_76283582_76284536_76284594_76286452_76286522_76287606_76287682_76288646_76288789_76291301_76291396_76293319_76293398_76295830_76295956_76296861_76296986_76298636_76298856_76300028_76300102_76303540_76303595_76303770_76303883_76305367_76305497_76321437_76321560_76323307_76323467_76328162_76328316_76330933_76331065_76333245
94266	chr17	+	1324	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	46	-8	46	8	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	93	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTCCTTCAGTTCC	3082	False	NA	NA	False	NA	NA	NA	35816960	35821677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
94267	chr11	-	5224	2	Intergenic	novelGene_2296	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	123	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAGCAAGACCCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	57450923	57433750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433914_57445862
94268	chr19	-	4311	1	Antisense	novelGene_ENSMUSG00000069833.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGTCCTGAGACATCA	9247	False	NA	NA	False	NA	NA	NA	8994270	8989959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8990000_8994300
94269	chr1	-	6962	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	-65	-3950	3	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	250	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATTGTGTGGGCTTTTTT	NA	False	NA	NA	False	NA	NA	NA	156767166	156631735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
94270	chr15	-	3490	6	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-6	intron_retention	FALSE	canonical	3	16287	junction_5	5866.15204030717	19	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	3572	False	NA	NA	False	NA	NA	NA	79967553	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962628_79962907_79964754_79965096_79965985_79966590_79966784_79967524
94272	chr11	+	6371	30	Intergenic	novelGene_2389	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	75	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAGAGACCCACGAGTCCT	4425	False	NA	NA	False	NA	NA	NA	68876527	68899247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_68877831_68877887_68879099_68879191_68879515_68880794_68880910_68880993_68881091_68881196_68881401_68881497_68881645_68881865_68881986_68882163_68882318_68882508_68882594_68882680_68882862_68883004_68883235_68883478_68883612_68883740_68883867_68884123_68884287_68884393_68884453_68884632_68884789_68885081_68885157_68888488_68888624_68888741_68888868_68890831_68890963_68891069_68891198_68891276_68891416_68891699_68891810_68891936_68892126_68892560_68892664_68893304_68893442_68894521_68894698_68898282_68898381_68899230
94273	chr9	-	741	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-2	29	-2	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256270	50255529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
94274	chr17	-	2686	1	Intergenic	novelGene_218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTACCTTCTTAATCA	NA	False	NA	NA	False	NA	NA	NA	40156574	40153888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_40153900_40156600
94275	chr12	+	9473	4	Antisense	novelGene_ENSMUSG00000113160.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	84	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTTTCCGTGTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	23748085	23923717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_23754758_23916492_23917036_23921414_23922241_23922285
94277	chr15	-	2660	5	ISM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	3584	3	1460	-3	3prime_fragment	FALSE	canonical	3	3946	junction_3	159.548386077704	1	136	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCATGAGTCTCAGTGG	3323	False	NA	NA	False	NA	NA	NA	36791198	36771016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927
94278	chr2	+	6327	24	NNC	ENSMUSG00000027678.18	novel	5757	23	NA	NA	23	669	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_11	62.4186124149152	397	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACAGTGGTGCTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	165834579	165914059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896370_165896444_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
94279	chr19	-	2983	16	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2081	11	NA	NA	-20	-37	multi-exon	FALSE	non_canonical	0	0	junction_1	205.981379956755	63	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGGCTCTCCTTCCGCC	5952	False	NA	NA	False	NA	NA	NA	4251681	4242144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4242269_4242739_4242871_4243018_4243252_4243765_4243857_4245109_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4249388_4249581_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
94280	chr17	+	1149	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	25	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2159.54873758385	4	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3061	False	NA	NA	False	NA	NA	NA	35816939	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820128_35820877_35821037_35821184_35821318_35821374
94281	chr4	+	2292	7	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-21	325185	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	125.445539312218	424	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTGGTAGAAATGACAACAA	NA	False	NA	NA	False	NA	NA	NA	147056411	147400397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056575_147058404_147058498_147060181_147060315_147113083_147113965_147114020_147114481_147322583_147323012_147400263
94282	chr18	+	8149	14	ISM	ENSMUSG00000024294.15	ENSMUST00000124288.8	2841	15	113	241	113	-115	intron_retention	FALSE	canonical	3	77	junction_2	9.78587316540877	180	76	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAATTAATTGTATTTGTG	NA	False	NA	NA	False	NA	NA	NA	10760921	10818463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_10760949_10763188_10763323_10768123_10768232_10775528_10775727_10778148_10778301_10792894_10793028_10794477_10794565_10795689_10795852_10798351_10798534_10800055_10800249_10802260_10802340_10804686_10804801_10808033_10808135_10811984
94283	chr14	-	2526	2	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	655	-13744	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	0	36	71	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCAGAACGGTCTCCGT	NA	False	NA	NA	False	NA	NA	NA	90322673	90315942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_90318195_90322399
94284	chr5	+	2147	4	NNC	ENSMUSG00000106820.2	novel	1081	3	NA	NA	1	39	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	38.9386982604994	76	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACACTAAGACAGTGGGC	NA	False	NA	NA	False	NA	NA	NA	147355411	147359893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_147355512_147357439_147357607_147357723_147358086_147358375
94285	chr4	+	6312	11	FSM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	11	-3290	-10	1576	multi-exon	FALSE	canonical	3	31	junction_7	8.01810451416044	173	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCTGGAGGTACGCAG	NA	False	NA	NA	False	NA	NA	NA	116578155	116664729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_116578454_116598812_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
94286	chr4	-	1473	5	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-17	697	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	9098.38236652538	21	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAATTCTAATCTAA	NA	False	NA	NA	False	NA	NA	NA	86775608	86772199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86773193_86774103_86774190_86774382_86774594_86774964_86775097_86775557
94287	chr2	+	696	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11303	214	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCCCCCCCCCACTTCTC	NA	False	NA	NA	False	NA	NA	NA	11413731	11426245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414033_11425727_11426046_11426168
94288	chr17	+	2489	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-489	-151	-489	151	mono-exon	FALSE	NA	NA	NA	NA	NA	2	115	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCGTCTGGGACCGCCT	NA	False	NA	NA	False	NA	NA	NA	40156754	40159243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40156800_40159200
94289	chr6	-	320	2	Genic_Genomic	ENSMUSG00000107176.2	novel	423	1	NA	NA	-27	47	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCCTACAG	NA	False	NA	NA	False	NA	NA	NA	66852754	66852257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_66852380_66852556
94290	chr16	-	2123	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1204	-3	695	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	89	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
94291	chr7	-	5567	6	NNC	ENSMUSG00000091594.3	novel	3673	4	NA	NA	-11962	2035	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.3947356265953	7	40	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTATTTGATGGTTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	42388403	42352857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42356762_42357084_42358310_42359840_42359902_42360100_42360228_42364722_42364868_42388298
94292	chr2	-	7741	42	NNC	ENSMUSG00000039834.18	novel	4587	28	NA	NA	790	12514	intron_retention	TRUE	non_canonical	0	0	junction_1	49.6228728133134	254	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCGCATGCGTCGGTACC	NA	False	NA	NA	False	NA	NA	NA	164752887	164721287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164721407_164724691_164724864_164725995_164726143_164726225_164726350_164727278_164727415_164727593_164727732_164727834_164727981_164728412_164728558_164728638_164728725_164728975_164729078_164730269_164730432_164731011_164731184_164731303_164731390_164731470_164731658_164732333_164732427_164732516_164734212_164734299_164734382_164734460_164734527_164734606_164734691_164734797_164734873_164735165_164735270_164735392_164735536_164735620_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164742420_164742440_164743337_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749495_164749572_164749879_164750074_164750153_164751125_164751364_164752541
94294	chr1	-	2096	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	14	-2578	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1098.69005489933	19	4	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCTTAAAATTTTATTTTA	NA	False	NA	NA	False	NA	NA	NA	13730756	13696131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697129_13697579_13697662_13697751_13697946_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
94295	chr15	+	2734	15	NNC	ENSMUSG00000039801.8	novel	2153	2	NA	NA	-3793	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.8964432919584	75	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	8272793	8300642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_8273156_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
94296	chr4	-	1958	7	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	9	-2	intron_retention	FALSE	non_canonical	0	0	junction_6	135.621614141044	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAAGGTCTGTTTATTA	9144	False	NA	NA	False	NA	NA	NA	155976174	155973320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155973626_155973890_155974054_155974125_155975127_155975209_155975360_155975508_155975697_155975814_155975879_155976087
94297	chr4	+	3040	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2690	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	128.891582347336	458	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAACCTGTATCATAAAGT	NA	False	NA	NA	False	NA	NA	NA	147576867	147600633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147597765_147599020
94298	chr6	-	1980	4	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.24264068711928	5	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCACACTCATGTCAGTGT	7479	False	NA	NA	False	NA	NA	NA	122691585	122684753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688493_122688759_122689580_122689666_122690091
94299	chr4	+	1315	9	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-86164	3401	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	138.285935655077	23	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGTGGTCATGGATAT	NA	False	NA	NA	False	NA	NA	NA	146500319	146627253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500498_146586549_146586585_146597241_146597335_146603534_146603615_146613823_146613960_146616526_146616611_146619877_146620005_146621233_146621333_146626770
94300	chrM	+	1411	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-33	0	-33	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	36	False	NA	NA	False	NA	NA	NA	10133	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10100_11500
94301	chr17	+	3087	18	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-29	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	575.748809848116	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATAAAATTCTGGCCGG	470	False	NA	NA	False	NA	NA	NA	56610370	56630463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629717_56630142
94302	chr5	-	2772	19	Fusion	ENSMUSG00000092183.2_ENSMUSG00000041890.18	novel	2984	20	NA	NA	466	-17	multi-exon	FALSE	canonical	0	0	junction_4	101.318788551681	2	61	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGATTTTACCATCATGC	9588	False	NA	NA	False	NA	NA	NA	114912578	114867652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114871997_114875403_114875499_114877093_114877343_114883489_114883633_114886240_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899629_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114912479
94303	chr14	+	4003	11	NNC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	-31	-182	intron_retention	FALSE	non_canonical	0	0	junction_10	491.412952617246	134	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGGAGAGGTGGCTCAG	8983	False	NA	NA	False	NA	NA	NA	55777814	55788517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55787289_55787636
94304	chr13	-	2997	5	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-7	172	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	61.8809340588844	37	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66589186	66577778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66580291_66581478_66581540_66581739_66581867_66587616_66587808_66589080
94305	chr7	+	1265	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-20	-13	-20	13	mono-exon	FALSE	NA	NA	NA	NA	NA	31	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGGCT	NA	False	NA	NA	False	NA	NA	NA	51396374	51397639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
94306	chr4	+	2431	4	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	7	10846	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2.49443825784929	25	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	2290	False	NA	NA	False	NA	NA	NA	147106313	147119114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147106487_147107818_147107913_147115003_147115080_147117026
94307	chr15	-	5352	13	ISM	ENSMUSG00000033228.9	ENSMUST00000047835.8	5766	15	16818	13	30	-13	3prime_fragment	TRUE	canonical	3	72	junction_2	59.7815467626368	15	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGGTTACAGTGAATAAAG	NA	False	NA	NA	False	NA	NA	NA	96341906	96311549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_96312798_96312912_96313033_96313657_96313829_96314729_96315071_96315952_96318728_96319826_96319934_96321397_96321500_96322450_96322558_96322709_96322766_96329661_96329727_96330204_96330306_96332800_96332879_96341825
94309	chr15	-	7625	4	NIC	ENSMUSG00000041935.11	novel	5076	6	NA	NA	25	-30	intron_retention	FALSE	canonical	3	219	junction_1	13.3666251038423	3	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACTTAATAAAATAAAACGA	2205	False	NA	NA	False	NA	NA	NA	4025201	4011546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_4018188_4019036_4019169_4021199_4021947_4025096
94310	chr13	+	963	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	-13	-12	13	mono-exon	FALSE	NA	NA	NA	NA	NA	1847	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAACTTTATTTATTTG	7950	False	NA	NA	False	NA	NA	NA	74554515	74555478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555500
94311	chr15	+	1908	7	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGACAGCCGCGGGGAC	NA	False	NA	NA	False	NA	NA	NA	36771019	36794485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36771380_36772260_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36794390
94312	chr8	+	2660	7	Antisense	novelGene_ENSMUSG00000031527.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCACCCCGAAAGGCTTGC	NA	False	NA	NA	False	NA	NA	NA	35934943	35962174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_35936523_35941548_35941666_35943612_35943728_35945718_35945797_35949668_35949881_35958354_35958534_35961794
94313	chr13	-	1947	6	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3172.67111437665	2	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTTATGACGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	58542601	58539056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542296
94314	chrX	-	6438	15	FSM	ENSMUSG00000040363.16	ENSMUST00000115513.9	6941	15	494	9	494	-6	multi-exon	FALSE	canonical	3	55	junction_8	42.398077064597	3	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGAGCAAATTGAAGTA	NA	False	NA	NA	False	NA	NA	NA	11946298	11902987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_11946056
94315	chr15	+	2794	4	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2898	10427	intron_retention	FALSE	non_canonical	0	0	junction_1	22.6274169979695	22	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGAAGCCCTGGAGACCT	NA	False	NA	NA	False	NA	NA	NA	98829307	98848861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98830446_98830575_98830722_98830853_98832301_98848798
94317	chr7	+	2201	9	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_6	216.601448517779	46	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	593	False	NA	NA	False	NA	NA	NA	4743123	4750513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748836_4748938_4749075_4749261_4749375
94318	chr4	+	3057	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	-28	-76	-28	76	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	188	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTTGCTGAAGTCATGAA	NA	False	NA	NA	False	NA	NA	NA	146599348	146623928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
94319	chr11	+	2804	1	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	50167	0	17618	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	98	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGTCTCCCATCT	NA	False	NA	NA	False	NA	NA	NA	57950056	57952860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57950100_57952900
94320	chr18	+	6870	38	NNC	ENSMUSG00000024421.17	novel	10548	75	NA	NA	-1366	1181	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	19.91739698612	129	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGGTGTCTACTTGG	NA	False	NA	NA	False	NA	NA	NA	12635889	12717251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12636222_12639977_12640092_12643506_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665006_12665090_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
94321	chr17	-	1010	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10059	-15128	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	322.039749099393	319	1	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2409	False	NA	NA	False	NA	NA	NA	6744480	6723928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6729753_6729852_6734317_6734422_6744415
94322	chr7	-	5697	19	NNC	ENSMUSG00000070426.13	novel	2344	9	NA	NA	-18291	-6	intron_retention	FALSE	non_canonical	0	0	junction_9	165.513864996782	445	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGCAAAGCTGGACACGC	NA	False	NA	NA	False	NA	NA	NA	101732967	101668364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684623_101688756_101688899_101691833_101691872_101714473_101715150_101719103_101719197_101720391_101720567_101722379_101722523_101725002_101725159_101726954_101727132_101727936_101728034_101728217_101728381_101729731_101729810_101730687_101730816_101731245
94323	chr3	+	4266	18	Antisense	novelGene_ENSMUSG00000002227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	73	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAACAAAACAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	104702229	104713488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702560_104702642_104702765_104703011_104703099_104703175_104703300_104704077_104704156_104704283_104704477_104704589_104704713_104706713_104707110_104707259_104707366_104707590_104707739_104707996_104708150_104708271_104708450_104708713_104708876_104709747_104709910_104710107_104710246_104711447_104711705_104711789_104712029_104712218
94324	chr17	-	911	1	FSM	ENSMUSG00000058542.4	ENSMUST00000078419.2	552	1	-207	-152	-207	152	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTGAGACAGCAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6182887	6181976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_6182000_6182900
94325	chr9	+	11065	7	NNC	ENSMUSG00000097111.2	novel	1264	2	NA	NA	-56764	150274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	145	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCGGAGTCCACAGCGCGC	6872	False	NA	NA	False	NA	NA	NA	56108409	56325338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56114896_56134385_56135131_56148447_56148629_56164810_56168049_56225947_56226107_56281661_56281721_56325141
94326	chr17	-	2987	8	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-7	-52	intron_retention	FALSE	canonical	3	9221	junction_1	491.484299165834	549	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTGTTCTAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	45884204	45878752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
94327	chr4	-	948	1	Antisense	novelGene_ENSMUSG00000119232.1_AS_novelGene_ENSMUSG00000082062.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTCTTAAGGGAAG	NA	False	NA	NA	False	NA	NA	NA	125398818	125397870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_125397900_125398800
94328	chr14	-	3468	18	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11269	42576	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGTTTCTGCCCCCAA	NA	False	NA	NA	False	NA	NA	NA	19861854	19818842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19819004_19828061_19828212_19828803_19829049_19829601_19829804_19831200_19831431_19839734_19839882_19840344_19840475_19841575_19841717_19847228_19847349_19848461_19848712_19852403_19852630_19853118_19853287_19855365_19855493_19855907_19856081_19857992_19858151_19860045_19860170_19861019_19861133_19861251
94329	chr13	+	4450	8	Antisense	novelGene_ENSMUSG00000052180.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTCACTCCCAGGCCTC	8629	False	NA	NA	False	NA	NA	NA	34046303	34089189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34046684_34049867_34053094_34064604_34064763_34077788_34077930_34079251_34079370_34081326_34081479_34083243_34083423_34089093
94330	chr4	-	3301	3	Antisense	novelGene_ENSMUSG00000060206.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	55011043	54947972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_54948231_55007527_55007780_55008252
94331	chr17	-	650	3	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	748	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5465	20	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	-101	True	NA	NA	NA	45879914	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878908_45879177_45879489_45879783
94332	chr5	-	3682	14	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	-6043	514	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	129.895588475227	50	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCGTTCTGAGAACAATGC	NA	False	NA	NA	False	NA	NA	NA	114110860	114079738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_114081527_114084336_114084890_114088446_114088648_114089939_114090087_114091313_114091361_114093778_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099510_114104240_114104363_114104769_114104835_114108431_114108536_114110788
94333	chr12	-	8780	43	FSM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	209	-1	-9	1	multi-exon	FALSE	canonical	3	48	junction_19	32.7528018915334	87	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACCTGTGTCGTGTTACT	NA	False	NA	NA	False	NA	NA	NA	51876110	51790503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
94334	chr4	+	5106	2	Intergenic	novelGene_1879	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	60	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820662	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66821249_66821315
94335	chr5	+	3967	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	-216	intron_retention	FALSE	canonical	0	0	junction_4	705.460026428776	5	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208609	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235082_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
94336	chrX	+	9427	26	FSM	ENSMUSG00000025332.15	ENSMUST00000112588.9	6449	26	2	-2980	2	2980	multi-exon	FALSE	canonical	3	451	junction_24	43.2417205948144	322	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTCCCATCCCATTAC	NA	False	NA	NA	False	NA	NA	NA	151016226	151060511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054926_151055070_151055271_151055704
94337	chr3	+	6539	20	NNC	ENSMUSG00000038902.15	novel	6399	19	NA	NA	-15998	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	18.1240722372163	226	35	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTTTCTGTGTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	94728879	94789633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_94728887_94744740_94745052_94761260_94761386_94763353_94763513_94768106_94768283_94769732_94769842_94771398_94771690_94771768_94771979_94777390_94777498_94778298_94778637_94779583_94779739_94781904_94782006_94782410_94782558_94783946_94784082_94784224_94784395_94784546_94784688_94785241_94785299_94785466_94785580_94785832_94785858_94785971
94338	chr9	-	573	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	-44	-57	-44	57	mono-exon	FALSE	NA	NA	NA	NA	NA	29	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGACTGGGGGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	115870176	115869603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_115869600_115870200
94339	chr7	+	5129	5	Antisense	novelGene_ENSMUSG00000074158.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	50	38	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACTGATGGGATAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	42258927	42292208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_42262958_42263042_42263647_42265395_42265453_42265650_42265783_42291902
94340	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
94341	chr11	+	3872	13	FSM	ENSMUSG00000020271.18	ENSMUST00000109366.8	3821	13	165	-216	14	-4	multi-exon	FALSE	canonical	3	196	junction_1	93.3590738314529	161	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTCTGTTCTGTCACAT	NA	False	NA	NA	False	NA	NA	NA	32592888	32696785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_32592936_32658187_32658251_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
94342	chr11	+	2794	18	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	21	-5	intron_retention	FALSE	canonical	3	862	junction_15	82.7709559076643	67	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGACCAATTGTTAATC	NA	False	NA	NA	False	NA	NA	NA	115455280	115474727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
94345	chr15	+	2610	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	63	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGCTCACAGGCTACAGC	76	False	NA	NA	False	NA	NA	NA	36771193	36793823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775824_36776492_36776611_36790930_36791235_36793724
94346	chr6	-	499	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	183	8	183	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	207	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGGCATGGTTGGCGTG	NA	False	NA	NA	False	NA	NA	NA	72935102	72934343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72934636_72934895
94347	chrX	-	1838	1	Intergenic	novelGene_3963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	79011497	79009659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_79009700_79011500
94348	chr10	+	3207	14	NNC	ENSMUSG00000019843.15	novel	1910	10	NA	NA	16190	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	33.4306665721104	128	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTTTATTTGTGTACA	NA	False	NA	NA	False	NA	NA	NA	39261988	39441377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_39262052_39271000_39271041_39331061_39331132_39387734_39387993_39391568_39391666_39398749_39398849_39401396_39401501_39402776_39402927_39405432_39405598_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
94349	chr10	-	2418	5	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	180	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	334.378528018771	1	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGTGCAGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	5755420	5749157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749823_5750255_5750643_5750702_5751243_5751868_5752533_5755258
94350	chr5	+	943	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	274	-12	1	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	13	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
94351	chr9	+	3029	9	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	45	4	-36	0	intron_retention	FALSE	canonical	3	5755	junction_3	221.441830680204	3	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGTGTTGTCCTTCCT	NA	False	NA	NA	False	NA	NA	NA	108765745	108778687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665
94352	chr10	-	2063	6	NNC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-16	-3	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	180.578625534696	1139	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	88520893	88510636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_88511933_88513361_88513757_88514385_88514499_88515720_88515818_88516340_88516437_88520827
94353	chr17	+	3571	17	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	16	-14	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	699.140429272796	3	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGCCGGGCAGTGGTG	436	False	NA	NA	False	NA	NA	NA	56610336	56630472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616297_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
94354	chr16	+	6342	31	NNC	ENSMUSG00000041215.17	novel	6112	31	NA	NA	-1	251	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	38.6537478418616	152	42	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGACTCTTTGTCTAAC	NA	False	NA	NA	False	NA	NA	NA	19959841	20051574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_19959986_19969191_19969311_19971658_19971757_19972886_19972980_19975636_19975883_19977886_19978003_19980725_19980888_19989940_19990053_19993244_19993290_19998250_19998426_20005000_20005241_20008088_20008248_20009135_20009240_20011908_20012017_20012393_20012577_20022404_20022664_20024833_20025000_20026373_20026544_20027168_20027328_20028781_20028959_20030318_20030500_20032016_20032146_20033140_20033243_20037133_20037237_20038367_20038442_20040423_20040504_20041489_20041692_20046462_20046690_20047446_20047522_20048247_20048322_20049514
94356	chr14	-	7319	25	FSM	ENSMUSG00000021733.12	ENSMUST00000057015.8	8132	25	802	11	2	-11	multi-exon	TRUE	canonical	3	66	junction_19	12.4782449576141	152	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACATATCACGGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	7766682	7669833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729849_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
94357	chr2	-	737	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	336	-73	-336	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACGGGAAGCTCACTGGC	NA	False	NA	NA	False	NA	NA	NA	28824694	28823957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28824000_28824700
94358	chr5	-	7092	6	ISM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	24631	12	-947	-12	3prime_fragment	FALSE	canonical	3	105	junction_2	17.4974283824795	127	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTCAGATAATTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	32986969	32947175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301
94359	chrM	-	1376	2	Genic_Genomic	ENSMUSG00000064343.1	novel	71	1	NA	NA	-1108	370	multi-exon	FALSE	non_canonical	0	0	junction_1	0	74	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGCGTATTCTACGTTAA	9980	False	NA	67	True	NA	NA	NA	4950	3401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_4382_4554
94360	chr17	+	1324	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1843.54175095114	7	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3036	False	NA	NA	False	NA	NA	NA	35816914	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820913_35821037_35821184
94361	chr5	+	6107	17	Antisense	novelGene_ENSMUSG00000106706.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	83	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGCGGAGCCGGGCGAA	NA	False	NA	NA	False	NA	NA	NA	66456609	66776143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_66460053_66464877_66465060_66466422_66466543_66468348_66468427_66469501_66469590_66470657_66470772_66520059_66520188_66522315_66522464_66548969_66549031_66549114_66549200_66549614_66549679_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649518_66700806_66700965_66775913
94362	chr4	-	4411	1	Intergenic	novelGene_1891	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8640	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGGAAGCTTCCGCTTCA	NA	False	NA	NA	False	NA	NA	NA	66825835	66821424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_66821400_66825800
94363	chr13	+	2201	1	Antisense	novelGene_ENSMUSG00002075993.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTAATCTAACAACCCTTA	4108	False	NA	NA	False	NA	NA	NA	66733937	66736138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66733900_66736100
94364	chr13	+	2885	4	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-2	1694	multi-exon	FALSE	canonical	3	85	junction_2	1129.97109107564	22	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACAGTATTTTCAAAGAGG	1245	False	NA	NA	False	NA	NA	NA	74547810	74557159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74547912_74553897_74554023_74554221_74554283_74554561
94365	chr19	-	6807	54	NNC	ENSMUSG00000048612.17	novel	6633	54	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	34.0334055731897	249	14	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGATGTTTGTCCTCT	8859	False	NA	NA	False	NA	NA	NA	38031844	37887679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_37888216_37889684_37889833_37890271_37890382_37892124_37892316_37893725_37893826_37896034_37896177_37899341_37899438_37899537_37899627_37901784_37901925_37904053_37904203_37904840_37905012_37909166_37909259_37909783_37909940_37911405_37911532_37913053_37913159_37916801_37916859_37919433_37919511_37921050_37921217_37923207_37923370_37924294_37924394_37924508_37924668_37924761_37924944_37926311_37926390_37927747_37927857_37928292_37928467_37930665_37930812_37931890_37931997_37934078_37934194_37937998_37938163_37939874_37940007_37941390_37941547_37942814_37943008_37944890_37944998_37948161_37948287_37949367_37949546_37955463_37955581_37956775_37956901_37958354_37958394_37960622_37960706_37963031_37963076_37963305_37963375_37966097_37966202_37968796_37968924_37969670_37969787_37970325_37970357_37971407_37971459_37971536_37971600_37974408_37974538_37975096_37975264_37983869_37983958_37986663_37986773_38011000_38011093_38012789_38012846_38031683
94366	chr12	-	1363	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3549.39897757928	5	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637708_111637794_111637876_111638014_111638199_111638408_111638663
94367	chr17	+	3366	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	593.435745784664	1	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	NA	False	NA	NA	NA	56610399	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620163_56622243_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
94368	chr5	-	1885	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	6	0	-6	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	60	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACAGCTTGTGGCTCTGT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
94369	chr17	+	7410	21	NNC	ENSMUSG00000038141.12	novel	4499	17	NA	NA	31	9124	intron_retention	TRUE	non_canonical	0	0	junction_14	329.877321894064	121	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGCCAGGCC	NA	False	NA	NA	False	NA	NA	NA	6307165	6367713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643_6361221_6361568_6361646_6361983_6362107_6365190_6365232_6367643
94370	chr8	+	1859	5	Intergenic	novelGene_1633	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_4	30.2572305408145	105	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTATTAAAGAGACTTTCC	NA	False	NA	NA	False	NA	NA	NA	43806962	43825439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_43807091_43809132_43809201_43811094_43811168_43818030_43818205_43824023
94371	chr13	-	2134	15	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	33	-32	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_2	238.360128839553	686	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACATTGATGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	104953428	104767679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_104768247_104771171_104771300_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
94372	chr11	-	2449	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	10	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1490.88536103998	6	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGACTGAATTAAGTGAA	9275	False	NA	NA	False	NA	NA	NA	106679699	106672382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673073_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
94373	chr1	-	6561	40	NIC	ENSMUSG00000037470.15	novel	9033	41	NA	NA	33	1040	combination_of_known_junctions	FALSE	canonical	3	115	junction_20	72.0100347306307	240	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCTTGGAAAGGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	36283353	36181522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
94374	chr19	-	1773	8	NNC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-9	594	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	318.833460462048	2062	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGAAAACTGTTGTGCCT	NA	False	NA	NA	False	NA	NA	NA	41921746	41911410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_41912678_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
94376	chrX	-	6193	9	Antisense	novelGene_ENSMUSG00000086452.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	64	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCACTTTAAAAATAAAAGG	NA	False	NA	NA	False	NA	NA	NA	121639892	121034895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_121034917_121228787_121229419_121234986_121235581_121245809_121246669_121364449_121364451_121377670_121378854_121438363_121438783_121617308_121617701_121637799
94377	chr11	-	3898	2	Intergenic	novelGene_2324	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57450872	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446780_57448118
94378	chr13	-	4827	6	FSM	ENSMUSG00000113204.2	ENSMUST00000220478.2	1989	6	-2	-2836	-2	996	multi-exon	FALSE	canonical	3	17	junction_3	36.0366480128216	196	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCCCTAACCCTAACCAC	4824	False	NA	NA	False	NA	NA	NA	74765823	74752067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74759382_74759507_74760842_74761068_74765320
94380	chr2	+	5307	17	NIC	ENSMUSG00000036617.18	novel	5898	19	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_15	63.4309417792295	2	126	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	4776	False	NA	NA	False	NA	NA	NA	20524581	20815335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790279_20793238_20793423_20802687_20802843_20803426_20803595_20812712_20812836_20813520
94381	chr4	+	2597	5	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14303	777	multi-exon	FALSE	non_canonical	0	0	junction_3	35.3013809928167	79	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145159006	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145173065_145173196_145173287_145173342_145176036
94382	chr15	+	5742	19	Antisense	novelGene_ENSMUSG00000036698.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	21	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCTGCCAGTGACCAAAA	3640	False	NA	NA	False	NA	NA	NA	72975725	73055163	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_72978866_72979013_72979213_72980219_72980321_72983533_72983669_72985554_72985754_72988151_72988242_72991184_72991348_72992913_72993095_72995165_72995306_72995725_72995849_72995978_72996098_72997011_72997159_72998293_72998387_72998804_72998938_73000172_73000308_73002707_73002889_73009838_73009962_73018217_73018415_73055020
94383	chr18	-	962	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-12	15	-12	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	24	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATCTTG	7411	False	NA	NA	False	NA	NA	NA	61393055	61392093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
94384	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	9	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
94385	chr4	-	4615	1	Antisense	novelGene_ENSMUSG00000028601.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	170	38	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTTCTTATGAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	108036915	108032300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108032300_108036900
94386	chr10	-	3204	2	Intergenic	novelGene_3474	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	8	53	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	74555798	74550610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74551462_74553445
94387	chrX	-	4678	14	NIC	ENSMUSG00000004317.15	novel	3052	15	NA	NA	47	1612	combination_of_known_junctions	FALSE	canonical	2	11	junction_12	15.0816319177261	68	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACCAGAAAGTCCTTT	3178	False	NA	NA	False	NA	NA	NA	7185550	7024095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7079102_7079250_7182897_7183063_7185344
94388	chr4	+	2651	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-29	0	multi-exon	TRUE	non_canonical	0	0	junction_1	125.592484736238	65	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216465	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578938_147595236_147595337_147596801_147597092_147599018_147599262_147668231
94389	chr2	-	4704	15	Fusion	ENSMUSG00000006471.19_ENSMUSG00000115018.3	novel	2336	14	NA	NA	1	3343	intron_retention	FALSE	non_canonical	0	0	junction_1	49.9953569272759	181	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTGGGGCGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	25145397	25131487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_25131500_25134860_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
94391	chr7	+	844	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	97	479	-40	-479	multi-exon	FALSE	canonical	3	3249	junction_1	86	103	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCCTGGATGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	18883743	18886988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_18883820_18885142_18885323_18886400
94392	chr9	-	2635	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	947	-838	64	838	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	127	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGGATTAAGGGTTGCT	8047	False	NA	NA	False	NA	NA	NA	78388059	78384892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
94393	chr4	-	3362	5	ISM	ENSMUSG00000028413.14	ENSMUST00000030121.13	3983	6	30332	5	30332	-5	3prime_fragment	FALSE	canonical	3	127	junction_2	16.6883192682786	1	138	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACTGGCTTCTTTTCTT	56	False	NA	NA	False	NA	NA	NA	40823673	40804606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_40807318_40807732_40807838_40809678_40809802_40812684_40812873_40823438
94394	chr5	-	2354	5	Genic_Genomic	ENSMUSG00000106028.2	novel	489	6	NA	NA	888	3839	multi-exon	FALSE	canonical	1	2	junction_1	22.4318412084251	203	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCTACATGCATTTTATT	NA	False	NA	NA	False	NA	NA	NA	109701134	109695918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_109697114_109697551_109698395_109699328_109699371_109700490_109700560_109700929
94395	chr12	-	1512	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7551	junction_5	133.251224718157	346	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
94396	chr2	+	5675	5	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	10	-1	intron_retention	FALSE	canonical	3	132	junction_1	114.73120761153	37	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTGACGTAAAGGTAGTT	NA	False	NA	NA	False	NA	NA	NA	172212610	172224367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535
94397	chr7	+	4114	17	NIC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	5483	12	intron_retention	FALSE	canonical	2	34	junction_3	10.8563057713018	24	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTCCAAGCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	30164632	30186660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30165307_30165433_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
94398	chr19	-	2463	3	NIC	ENSMUSG00000096370.9	novel	1435	3	NA	NA	-3	0	intron_retention	FALSE	canonical	3	15	junction_1	10	2	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTGCTTTGAGAAA	7793	False	NA	NA	False	NA	NA	NA	4861634	4835179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4835596_4842425_4844038_4861199
94399	chr3	-	3086	8	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	-11	-742	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_7	122.530129572531	32	28	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGTTATTGTATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	19217240	19186307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19211947_19212092_19217073
94400	chr2	-	1635	5	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5551	17049	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	22.9387772123974	2	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGCCGGGCAATGATGGT	NA	False	NA	NA	False	NA	NA	NA	177021651	176989263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176990532_177007618_177007703_177008856_177008918_177009124_177009225_177021529
94401	chr13	+	8360	33	Antisense	novelGene_ENSMUSG00000021311.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	240	52	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGGGCCCGCCCCCTTCC	NA	False	NA	NA	False	NA	NA	NA	12197616	12273066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_12201978_12202926_12203039_12204231_12204428_12205091_12205290_12208498_12208695_12210121_12210279_12212796_12212874_12213930_12214031_12215082_12215165_12219628_12219747_12220172_12220244_12227273_12227374_12227555_12227662_12230295_12230451_12231694_12231786_12236307_12236449_12237040_12237157_12240346_12240527_12242568_12242754_12245828_12245971_12247786_12247899_12250340_12250417_12252861_12252937_12254536_12254595_12256448_12256552_12258820_12258916_12259440_12259503_12262203_12262312_12262778_12262871_12264729_12264800_12265486_12265577_12268648_12268861_12272743
94402	chr4	+	2733	4	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	375	3	NA	NA	1922	-234	multi-exon	FALSE	non_canonical	0	0	junction_1	233.962960031426	12	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	NA	False	NA	NA	False	NA	NA	NA	145138757	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145138896_145257381_145257486_145261385_145261513_145263160
94403	chr16	-	564	1	Intergenic	novelGene_3758	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
94404	chr7	-	2222	8	NNC	ENSMUSG00000030407.3	novel	2710	7	NA	NA	48	67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.4741792017683	56	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGCTTCCAAGATTCACCC	7252	False	NA	NA	False	NA	NA	NA	18883168	18873559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_18873762_18874268_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881077_18882300_18882445_18882900
94405	chr16	-	4663	5	NIC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-2	intron_retention	FALSE	canonical	3	1087	junction_1	78.6332467853134	6	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTAGTCTCCTGCCT	8675	False	NA	NA	False	NA	NA	NA	33787373	33775153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_33777306_33779422_33779538_33780546_33782611_33784141_33784296_33787195
94406	chr17	+	951	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	41	857	41	-857	mono-exon	FALSE	NA	NA	NA	NA	NA	3	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGAGCGAAAGCATTTG	NA	False	NA	16	True	NA	NA	NA	40157284	40158235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40158200
94407	chr11	+	4079	9	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	3	0	intron_retention	FALSE	non_canonical	0	0	junction_3	499.167040553561	1413	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9434	False	NA	NA	False	NA	NA	NA	88861080	88882439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861306_88863446_88865029_88871894_88872818_88872884_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
94408	chr18	+	1748	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	0	-1	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	48179712	48181460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
94409	chrM	+	2611	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1029	0	1029	mono-exon	FALSE	NA	NA	NA	NA	NA	32	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAATATGTCTGATAAAA	-3	True	NA	22	True	NA	NA	NA	1093	3704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
94410	chr2	-	1339	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	178	1025	25	-1017	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3810	False	NA	NA	False	NA	NA	NA	154734677	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
94411	chr16	-	564	1	Intergenic	novelGene_3759	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
94412	chr9	+	1692	2	ISM	ENSMUSG00000048758.15	ENSMUST00000213448.2	845	3	19	-170	12	-9	intron_retention	FALSE	canonical	3	3966	junction_1	0	20	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGTTAGCTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	106306772	106308757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_106307214_106307506
94413	chr11	-	2259	2	Antisense	novelGene_ENSMUSG00000010342.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	5	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCCTGTCTTAGCTGC	NA	False	NA	NA	False	NA	NA	NA	87373781	87368786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_87370815_87373550
94414	chr14	-	4536	22	Antisense	novelGene_ENSMUSG00000021913.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	95	67	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTATCAATTACCTAGGT	NA	False	NA	NA	False	NA	NA	NA	32069789	32043996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_32044073_32045834_32045905_32047750_32047952_32048931_32049105_32054135_32054240_32054441_32054556_32054701_32054858_32055664_32055812_32057290_32057381_32059396_32059580_32059708_32059839_32061160_32061341_32061856_32062011_32062599_32062702_32063155_32063286_32063994_32065284_32066276_32066459_32066669_32066743_32066839_32066966_32067066_32067139_32068353_32068814_32069465
94415	chrX	-	3297	12	ISM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	11250	5372	2322	-969	internal_fragment	FALSE	canonical	3	303	junction_10	24.5181666498082	5	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGAGCTCCAGGCCGCCGT	NA	False	NA	NA	False	NA	NA	NA	72998713	72991769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619
94416	chr4	-	3501	20	ISM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	3089	0	1388	0	3prime_fragment	FALSE	canonical	3	287	junction_9	35.1497784517592	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	2938	False	NA	NA	False	NA	NA	NA	41121366	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210
94418	chr17	-	2351	10	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	12	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	301.420259504079	120	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050171	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008871_7020446_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
94419	chr16	-	564	1	Intergenic	novelGene_3760	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
94420	chr14	+	1440	8	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-19	177	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1189.00484885985	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAATGGCTCACGTATGTG	NA	False	NA	NA	False	NA	NA	NA	21881614	21895764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21882022_21883867_21883914_21887811_21887988_21888452_21888687_21890486_21890638_21893949_21894008_21895213
94421	chr14	-	1496	9	NIC	ENSMUSG00000007589.10	novel	2956	9	NA	NA	-5	1095	combination_of_known_junctions	FALSE	canonical	2	25	junction_8	110.476241789807	4	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATAGGTCTGTGTAGGTC	NA	False	NA	NA	False	NA	NA	NA	55919237	55916568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55919020
94422	chr14	+	4187	25	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	4091	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	339.170902410078	1	80	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGCATTACTTCATTA	NA	False	NA	NA	False	NA	NA	NA	121157349	121185411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163740_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130_121184640_121184758
94423	chr7	-	2597	7	NIC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	20	-2	intron_retention	FALSE	canonical	3	221	junction_6	55.6866231693034	69	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCCAGCTGCCGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	126817623	126813620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126814017_126814120_126814619_126814830_126814928_126815039_126815142_126815861_126817230_126817312_126817404_126817578
94424	chr6	-	3490	8	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	79	-3	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_7	190.173926837986	56	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCACAGCTTCTGTAGTA	NA	False	NA	NA	False	NA	NA	NA	49191812	49062159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082633_49191230
94425	chr1	-	3287	15	NIC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	-78	-3259	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	40.1245509861074	2	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCCCAGACCCCCTAGCA	1431	False	NA	NA	False	NA	NA	NA	118981147	118765120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_118765908_118767983_118768321_118769645_118769928_118772080_118772246_118773646_118773797_118776112_118776248_118780987_118781111_118782170_118782388_118783165_118783368_118794301_118794488_118795708_118795912_118818025_118818132_118892179_118892291_118929769_118929937_118981031
94426	chr11	+	2365	10	ISM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	1299	4351	1299	-4	internal_fragment	FALSE	canonical	3	111	junction_6	10.5619863451699	45	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAACAAGATAAACAACTTT	NA	False	NA	NA	False	NA	NA	NA	77874926	77917014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710
94427	chr10	+	2998	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	22	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1898.57666343468	80	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	2203	False	NA	NA	False	NA	NA	NA	81012486	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722_81018176_81018240
94428	chrX	-	4423	2	FSM	ENSMUSG00000031167.17	ENSMUST00000145450.2	721	2	60	-3762	-2	72	multi-exon	FALSE	canonical	3	1172	junction_1	0	26	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTGAGAGATTAAAGGTAGAG	6559	False	NA	NA	False	NA	NA	NA	8011938	8006950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_8011312_8011876
94429	chr9	+	5688	25	NNC	ENSMUSG00000040325.17	novel	4945	23	NA	NA	0	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_24	84.0237131707472	234	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGCCTTTCCTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	106699072	106758184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_106699291_106706259_106706378_106708056_106708134_106711347_106711422_106712714_106712829_106713759_106713898_106715397_106715908_106716230_106716333_106721334_106721494_106723857_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742899_106751254_106751508_106757132_106757415_106757466
94430	chr15	+	1224	2	NNC	ENSMUSG00000043091.10	novel	781	3	NA	NA	3772	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7613	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAGTTGCAAACTGGCAT	NA	False	NA	NA	False	NA	NA	NA	98931973	98935981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98932182_98934965
94431	chr16	-	564	1	Intergenic	novelGene_3761	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	125	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
94432	chr7	+	2401	7	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-3	14083	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	100.788006341143	2	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTATTATTTGAGTCT	9995	False	NA	NA	False	NA	NA	NA	42863459	42890349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135_42876337_42884606_42885020_42889926
94433	chr9	-	6621	48	NNC	ENSMUSG00000032198.10	novel	6880	50	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_6	50.3292284448443	298	42	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGGTGTGCTGACAG	6283	False	NA	NA	False	NA	NA	NA	21763904	21711475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21711696_21712466_21712629_21712817_21713165_21713648_21713886_21714109_21714200_21714288_21714422_21716014_21716147_21720816_21720961_21721043_21721237_21723069_21723171_21724247_21724407_21724680_21724834_21725764_21725900_21726006_21726104_21727196_21727282_21727608_21727736_21728578_21728762_21729108_21729270_21731558_21731729_21731817_21731958_21732751_21732923_21733030_21733145_21735692_21735834_21736730_21736827_21737078_21737172_21740769_21740875_21741509_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
94435	chr17	+	1232	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	128	2	128	-2	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	6	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3164	False	NA	NA	False	NA	NA	NA	35817042	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
94437	chr17	+	6709	11	NNC	ENSMUSG00000038141.12	novel	4499	17	NA	NA	3107	9120	intron_retention	FALSE	non_canonical	0	0	junction_4	406.718526747922	10	85	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCGCAGGCGCGGCCA	NA	False	NA	NA	False	NA	NA	NA	6350984	6367709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6351074_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355305_6361221_6361568_6361646_6361983_6362110_6365190_6365232_6367643
94438	chrX	-	3939	7	NNC	ENSMUSG00000009406.14	novel	3548	6	NA	NA	33	590	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	42.7918086657819	143	47	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATCTTAAAACAACAAAACA	NA	False	NA	NA	False	NA	NA	NA	20816814	20799043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_20801788_20801869_20801972_20802470_20802657_20802822_20802903_20803355_20803803_20807792_20808037_20816678
94439	chr8	+	7972	1	Genic_Genomic	ENSMUSG00000071793.13	novel	NA	NA	NA	NA	-16	-21467	mono-exon	FALSE	NA	NA	NA	NA	NA	477	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGGTAATGCTTAATAG	NA	False	NA	NA	False	NA	NA	NA	20016449	20024421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_+_20016400_20024400
94441	chr7	+	3207	18	NIC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	5769	10	intron_retention	FALSE	canonical	1	1	junction_12	16.3941503619421	48	76	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTCTGTTCCAAGCCAAA	NA	False	NA	NA	False	NA	NA	NA	30164918	30186658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177785_30180805_30180926_30181066_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
94442	chr12	-	2661	6	NIC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-22	-1	intron_retention	FALSE	canonical	3	10789	junction_3	2556.30902670237	24	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTGGTTGTAGTAACT	NA	False	NA	NA	False	NA	NA	NA	28685899	28681085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_28681193_28681622_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
94443	chr2	+	3939	6	NNC	ENSMUSG00000027439.10	novel	4232	6	NA	NA	-994	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	38.204711751301	1	99	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTGCTTTGTAAAAG	2966	False	NA	NA	False	NA	NA	NA	148525537	148534869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_148526889_148528433_148528529_148529923_148530092_148532000_148532154_148532626_148533744_148533814
94444	chr6	-	2606	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	206.102191695164	1	45	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAATCTAATTCTTTGT	3048	False	NA	NA	False	NA	NA	NA	71885734	71857633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884709_71884777_71884831_71885617
94445	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	56	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
94446	chr4	+	6041	5	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	11	-7	intron_retention	TRUE	non_canonical	0	0	junction_3	10.8050913924872	32	105	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAAGTTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147637744	147669648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147661481_147661587_147663196_147663723_147664208_147668023_147668191
94447	chr10	+	7648	11	NIC	ENSMUSG00000037608.17	novel	3231	13	NA	NA	0	1	intron_retention	FALSE	canonical	3	21	junction_4	386.496830517405	46	120	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGCTGGTCTCTGTTTGCC	2793	False	NA	NA	False	NA	NA	NA	20188217	20218246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_20188351_20193753_20193858_20197748_20201552_20201675_20201846_20202909_20203138_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
94448	chr12	+	3148	11	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	190.59800628548	11	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAAAAAAAGTGTGAAGTAC	2865	False	NA	NA	False	NA	NA	NA	109612563	109628141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615677_109616505_109617006_109617078_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
94449	chr7	+	5960	2	Antisense	novelGene_ENSMUSG00000097415.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	194	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTCCCCAATTCCCGC	NA	False	NA	NA	False	NA	NA	NA	75424614	75431869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_75430503_75431797
94450	chr19	+	3902	17	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	113	-12	intron_retention	FALSE	canonical	0	0	junction_13	228.918790185515	4	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGCTCCTCCAGGCTCAG	3582	False	NA	NA	False	NA	NA	NA	8919351	8929655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8927028_8927518_8927754_8928275_8928395_8928499_8928649_8928853
94451	chr1	+	3198	11	Antisense	novelGene_ENSMUSG00000037351.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTCCCCTCCCCCAGTGC	NA	False	NA	NA	False	NA	NA	NA	36737194	36749036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_36739262_36739418_36739459_36739616_36739681_36740216_36740392_36740503_36740597_36740767_36740981_36741137_36741267_36741557_36741680_36745946_36746027_36747271_36747336_36748885
94452	chr8	-	6755	38	Antisense	novelGene_ENSMUSG00000031592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	30	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCGTGCGGTGACCTGA	NA	False	NA	NA	False	NA	NA	NA	41784174	41692655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_41692998_41709029_41709147_41710826_41711072_41712071_41712342_41714045_41714219_41714396_41714513_41720222_41720399_41723474_41723583_41725275_41725498_41727136_41727336_41728031_41728204_41728687_41728843_41728960_41729187_41732784_41732929_41733056_41733187_41735614_41735756_41736590_41736784_41739001_41739198_41740713_41740937_41741043_41741190_41741665_41741857_41743755_41743927_41746491_41746853_41757022_41757183_41762549_41762734_41763048_41763178_41765194_41765311_41766335_41766496_41766879_41767017_41768954_41769088_41774886_41775087_41777989_41778053_41778298_41778437_41778863_41779023_41780561_41780637_41781805_41782059_41783663_41783761_41783840
94453	chr17	-	2828	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	66	108	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	43.7470633935074	24	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCCATAATTGTAACATAA	NA	False	NA	NA	False	NA	NA	NA	22580315	22556861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22559089_22559947_22560092_22562620_22562675_22574057_22574116_22577803_22577897_22578420_22578506_22580148
94454	chr9	+	1029	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	810	-1	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	127	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
94455	chr11	+	6341	23	Antisense	novelGene_ENSMUSG00000025153.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	126	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTAAACCGCGGCCATCC	NA	False	NA	NA	False	NA	NA	NA	120702837	120714957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120703050_120703128_120703275_120703481_120703688_120703795_120703953_120704035_120704864_120705299_120706619_120706706_120706788_120706864_120707060_120707131_120707307_120707450_120707563_120707671_120707873_120707946_120708085_120708297_120708405_120708817_120709004_120709260_120709449_120709565_120710024_120710625_120710761_120710851_120710968_120711067_120711199_120711360_120711561_120711726_120711901_120712904_120713681_120714857
94456	chr4	-	2798	9	Intergenic	novelGene_2128	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	475	33	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGAACTTCCCTTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	147669653	147216489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147216657_147534447_147534573_147578831_147578926_147637751_147637877_147639756_147639902_147661526_147661585_147665696_147665825_147667289_147667435_147667842
94457	chr17	+	4410	15	NNC	ENSMUSG00000090936.3	novel	1555	2	NA	NA	-9257	-1795	intron_retention	FALSE	non_canonical	0	0	junction_1	0	9	98	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGGGAGGCGGGGCTTTC	NA	False	NA	NA	False	NA	NA	NA	35374837	35384367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35376183_35376322_35376540_35376857_35377560_35377911_35378389_35378754_35378969_35379073_35379169_35379430_35379571_35379728_35379809_35380003_35380158_35380310_35380451_35380614_35380686_35380781_35380886_35381177_35381359_35381850_35382025_35384051
94458	chr7	-	1777	3	Antisense	novelGene_ENSMUSG00000002781.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACACGCTTGAAGTATCT	9872	False	NA	NA	False	NA	NA	NA	45561202	45558766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_45560239_45560416_45560554_45561034
94459	chr13	+	4495	4	Antisense	novelGene_ENSMUSG00000113204.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	115	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGTGCAGGAAGCCACCC	NA	False	NA	NA	False	NA	NA	NA	74752042	74765815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_74755857_74757242_74757301_74758317_74758445_74765319
94460	chr16	-	3261	16	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	75	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	518.560014741678	1	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGGTTTAAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	15455189	15441966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454480_15454647_15455025
94462	chr10	-	3518	7	FSM	ENSMUSG00000038151.14	ENSMUST00000105490.3	4025	7	23	484	23	-484	multi-exon	FALSE	canonical	3	20	junction_6	13.6218778278017	13	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCGTGTTCAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	44334660	44314772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44334462
94463	chr4	+	2952	3	ISM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	64399	7157	-579	1243	3prime_fragment	FALSE	canonical	3	63	junction_1	1.5	65	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATGCACATTCATATTG	NA	False	NA	NA	False	NA	NA	NA	59690609	59754282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_59691339_59737561_59737735_59752232
94465	chr18	-	2753	9	NIC	ENSMUSG00000037013.18	novel	2911	10	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	296.915812984085	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	14815832	14758687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_14760369_14766599_14766734_14769552_14769676_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
94466	chr11	+	2557	14	NNC	ENSMUSG00000020459.15	novel	2425	14	NA	NA	-8	159	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	96.6961935453193	42	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTTTTAAAAAAATGGTAA	NA	False	NA	NA	False	NA	NA	NA	29476399	29495438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476483_29479928_29480155_29480580_29480693_29483294_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492514_29494274_29494411_29494912
94468	chr15	-	1389	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	55	-1	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	10035.6848164126	1	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	4396	False	NA	NA	False	NA	NA	NA	79966729	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590
94469	chr9	+	1533	2	Intergenic	novelGene_1170	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	16	junction_1	0	58	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTCTATGTAAAGACATT	1237	False	NA	NA	False	NA	NA	NA	111353202	111361768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_111353258_111360290
94470	chr9	-	4239	19	NNC	ENSMUSG00000059890.17	novel	3486	19	NA	NA	-2	2838	intron_retention	TRUE	non_canonical	0	0	junction_1	15.8507701257777	50	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGCTGGAGAGATGGCTCA	5320	False	NA	NA	False	NA	NA	NA	44876878	44841430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_44841469_44843451_44844777_44846624_44846800_44848930_44849045_44849146_44849248_44851258_44851447_44852451_44852585_44853863_44854169_44856102_44856224_44857481_44857816_44859323_44859516_44860079_44860283_44861030_44861191_44862078_44862232_44863287_44863401_44864239_44864471_44871276_44871438_44874634_44874731_44876782
94471	chr9	+	3923	6	NNC	ENSMUSG00000097111.2	novel	1264	2	NA	NA	-30161	150325	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	94	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCGCTCGCTCCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	56135012	56325389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56135131_56148447_56148629_56164810_56168049_56225947_56226107_56281661_56281722_56325222
94472	chr9	+	4362	4	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-7	-147	intron_retention	FALSE	canonical	3	18963	junction_1	849.957384552635	5235	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080667	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64083005_64083373_64085300_64085504
94473	chr13	+	6545	12	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113350.3	novel	1525	4	NA	NA	-29	5052	intron_retention	TRUE	non_canonical	0	0	junction_5	47.6660213021483	7	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGAGCTGAAAAGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	66261264	66351422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325521_66327529_66327618_66327791_66334416_66334495_66340135_66340278_66341741_66341914_66343066_66343121_66344211_66347539_66351270
94474	chr11	-	1161	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	30	-189	30	189	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGCCTT	4491	False	NA	NA	False	NA	NA	NA	20285983	20284822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286000
94475	chr10	+	2009	15	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	-12	-7	intron_retention	FALSE	non_canonical	0	0	junction_7	601.648856841576	13	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCATGGGATGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	111309129	111332738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326927_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
94476	chr5	+	5618	44	NIC	ENSMUSG00000037426.19	novel	8216	43	NA	NA	-9	-47	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	41.0762327340185	53	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCACACCAGCTGTACA	2043	False	NA	NA	False	NA	NA	NA	33021094	33148951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33021166_33021353_33021657_33021920_33022044_33025317_33025406_33026164_33026212_33032625_33032712_33034413_33034498_33035971_33036022_33044322_33044393_33050718_33050798_33053223_33053286_33055222_33055293_33056335_33056409_33058799_33058904_33059173_33059249_33061120_33061256_33061618_33061681_33061802_33061877_33067800_33067871_33069552_33069590_33070443_33070565_33075268_33075490_33081505_33081710_33084233_33084370_33085188_33085284_33091293_33091360_33094864_33095049_33095488_33095650_33100575_33100694_33101314_33101483_33102266_33102487_33103977_33104112_33113196_33113303_33116624_33116691_33121975_33122128_33125074_33125153_33125982_33126116_33131160_33131270_33132660_33132889_33136728_33136899_33141202_33141375_33144279_33144341_33148085_33148169_33148282
94477	chr15	-	3115	17	NIC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-17	345	intron_retention	FALSE	canonical	3	2899	junction_9	217.477360531505	3385	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGACCTCTGTCCTCACG	NA	False	NA	NA	False	NA	NA	NA	11399704	11383745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
94478	chr5	-	4516	5	NIC	ENSMUSG00000029512.12	novel	5213	28	NA	NA	-754	-1	intron_retention	FALSE	canonical	3	980	junction_2	76.3560737597213	6	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110938086	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935812_110935975
94479	chr3	+	2159	12	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	17	-6	intron_retention	FALSE	canonical	0	0	junction_9	619.637790758066	1	59	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACCAGTACAAGCATT	NA	False	NA	NA	False	NA	NA	NA	90383480	90395680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391598_90391660_90391760_90391878_90393956_90394405_90394533_90394625_90394765
94480	chr4	+	4151	6	FSM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	24	0	24	0	multi-exon	FALSE	canonical	1	5	junction_1	107.967402487973	2	88	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	NA	False	NA	NA	NA	101276539	101324192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_101276599_101276925_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
94482	chr8	+	1597	6	NNC	ENSMUSG00000034656.19	novel	1153	5	NA	NA	-78	395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	17.6249822694946	94	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAAGCAAGATGGCTCAGT	NA	False	NA	NA	False	NA	NA	NA	85327981	85340066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85328135_85328384_85328451_85328552_85328669_85338226_85338378_85338913_85339830_85339871
94483	chr3	+	1846	6	NIC	ENSMUSG00000015750.16	novel	2863	6	NA	NA	-7	19	intron_retention	FALSE	canonical	2	3	junction_1	133.253742911785	8	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGGGGACTTGGCTTT	NA	False	NA	NA	False	NA	NA	NA	95801337	95804776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95801596_95802268_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
94484	chr7	+	552	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	98	459	-13	0	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	136	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	NA	False	NA	NA	NA	28050174	28052121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
94485	chr13	-	4050	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	1	intron_retention	FALSE	canonical	3	31	junction_3	2022.80759248452	102	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	4751	False	NA	NA	False	NA	NA	NA	58550330	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58547027_58547706_58547805_58548146_58548232_58550206
94486	chr18	+	3741	11	NNC	ENSMUSG00000039840.9	novel	9660	44	NA	NA	-12520	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	10.5090437243357	31	61	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCAACCTTTGATTGTA	NA	False	NA	NA	False	NA	NA	NA	78060883	78078207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_78060940_78062429_78062537_78063952_78064129_78065865_78066052_78066491_78066702_78067140_78067286_78070471_78070715_78071977_78072195_78073181_78073400_78073555_78073671_78076139
94487	chr4	-	2162	12	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	382.976403476552	3	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484616	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469223_116484528
94488	chr17	-	2677	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	333	17	137	-17	multi-exon	FALSE	canonical	3	561	junction_9	75.0022221893014	4	36	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACATGTGAAAAATTGAGT	2517	False	NA	NA	False	NA	NA	NA	45744330	45702826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
94489	chr1	-	3518	1	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	65	56	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	116	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCATTTGCAAGGCCCC	2403	False	NA	NA	False	NA	NA	NA	93729563	93726045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93726000_93729600
94490	chr7	+	3621	16	NIC	ENSMUSG00000035545.14	novel	3620	16	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	173	junction_15	69.6971225294767	212	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTGTTTCTGCTTGGCCT	103	False	NA	NA	False	NA	NA	NA	4140058	4151170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_4140151_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
94491	chr1	+	2955	3	NNC	ENSMUSG00000045216.8	novel	3719	2	NA	NA	676	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	190.5	1	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCATTGTGTGCTGTGGT	2439	False	NA	NA	False	NA	NA	NA	36108156	36145521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_36108266_36142593_36144615_36144696
94492	chr17	-	1823	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	628	1726	mono-exon	FALSE	NA	NA	NA	NA	NA	26	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACTGGCAGGATCAACCA	NA	False	NA	NA	False	NA	NA	NA	40159090	40157267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157300_40159100
94493	chr7	+	1129	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	103	0	103	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396497	51397626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
94494	chr13	+	7166	49	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	4	68210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	466.911378825879	8	118	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGGCCCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	6598198	6698761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625076_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685_6630159_6630209_6631628_6632437_6632544_6634638_6634739_6636517_6636628_6637086_6637150_6638524_6638690_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653500_6654991_6655117_6655670_6655765_6664739_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675249_6685959_6686037_6698608
94495	chr5	-	3115	15	ISM	ENSMUSG00000055204.16	ENSMUST00000197021.2	8067	34	56708	15066	-4513	-7393	internal_fragment	FALSE	canonical	3	25	junction_14	38.5434422279006	7	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAATGCCACAACCACAAC	NA	False	NA	NA	False	NA	NA	NA	90430894	90391665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90430709
94496	chr3	-	1800	13	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	-3	2	intron_retention	FALSE	canonical	0	0	junction_1	206.027691639309	42	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGTGTGTAGGGACCTGT	NA	False	NA	NA	False	NA	NA	NA	88821192	88816948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88817210_88817436_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
94497	chr11	-	2443	17	NNC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	-1	255	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_14	180.504674454708	301	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAAGCCGCTTTCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	84020427	83969490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84016596_84016633_84017813_84017922_84020362
94498	chr17	+	2101	7	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	334	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	105.167591121135	1	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17342010	17367100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17342217_17362997_17363125_17363366_17363428_17364720_17365291_17365543_17366130_17366465_17366734_17366817
94499	chr13	+	832	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-19	-34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGCAAAAAAAACAAAAAA	7943	False	NA	NA	False	NA	NA	NA	74554508	74555431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554936_74555026
94500	chr4	-	3169	9	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-96	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	354.27602233287	2	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAACGGACTGTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	126074036	126057880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126059189_126060782_126060868_126061262_126061459_126065486_126065669_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704
94501	chr13	+	3035	13	Fusion	ENSMUSG00000114684.3_ENSMUSG00000095909.3	novel	1525	4	NA	NA	-27	394	intron_retention	FALSE	canonical	0	0	junction_5	42.6562487281237	9	13	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGTCTGAGATTCCTT	NA	False	NA	NA	False	NA	NA	NA	66261266	66666062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66309197_66309325_66309508_66309570_66638795_66638924_66645539_66645687_66648037_66648116_66654710_66654789_66660218_66660361_66661815_66661988_66663166_66663221_66664310
94502	chr18	+	1744	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	4	-1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	7	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
94503	chr15	+	4655	3	Intergenic	novelGene_3221	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	617.5	4	84	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTGTAAATTGCAAGAGG	NA	False	NA	NA	False	NA	NA	NA	22699818	22705007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22700670_22701109_22704559_22704652
94504	chr6	+	4285	6	NNC	ENSMUSG00000043131.15	novel	4412	6	NA	NA	9	-28	intron_retention	FALSE	canonical	0	0	junction_2	114.463269217684	1	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATTAAATTTGGAGAGTT	NA	False	NA	NA	False	NA	NA	NA	83303026	83320729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_83303250_83306848_83306947_83309435_83309530_83311057_83311192_83315262_83315427_83317157
94505	chr1	+	3939	6	Antisense	novelGene_ENSMUSG00000102982.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	4.8	121	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCGTGACGTCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	13694831	13730759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13697946_13700288_13700437_13708453_13708638_13717613_13717736_13720944_13721108_13730551
94506	chr17	-	1346	8	FSM	ENSMUSG00000023935.11	ENSMUST00000024731.9	1160	8	-185	-1	-185	1	multi-exon	FALSE	canonical	2	8	junction_7	6.20730313782869	68	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGCCTCTCCCATGGTAG	NA	False	NA	NA	False	NA	NA	NA	45786049	45759861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
94507	chrX	-	2844	4	NIC	ENSMUSG00000031388.15	novel	892	7	NA	NA	-5	-4	intron_retention	FALSE	canonical	3	1031	junction_1	44.0630860875127	10	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCATAGTGGGGTATGCT	NA	False	NA	NA	False	NA	NA	NA	72965517	72960484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72961534_72963107_72964648_72964877_72964977_72965361
94508	chrX	+	2158	2	FSM	ENSMUSG00000016319.4	ENSMUST00000126608.2	989	2	-5	-1164	-2	0	multi-exon	FALSE	canonical	3	12606	junction_1	0	25	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059301	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495
94509	chr9	+	2943	14	ISM	ENSMUSG00000009741.16	ENSMUST00000116492.3	2111	16	13344	-167	13254	-17	intron_retention	FALSE	canonical	3	191	junction_6	65.9687033561007	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATTTAATGCTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	113773975	113806052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_113774068_113780675_113780753_113785030_113785137_113785774_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
94510	chr14	+	2961	1	Intergenic	novelGene_541	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTCTGACTGCGTGTT	7198	False	NA	NA	False	NA	NA	NA	34099729	34102690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_34099700_34102700
94511	chr13	-	2385	5	NNC	ENSMUSG00000094942.8	novel	2310	4	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	30.8017856625229	221	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62531025	62516141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62518166_62519376_62519438_62519623_62519751_62529443_62529485_62530893
94512	chr4	+	2805	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	7	0	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3199076928666	759	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578926_147637751_147637884_147639766_147639810_147665698_147665826_147667290_147667431_147667838
94513	chr16	-	564	1	Intergenic	novelGene_3762	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
94514	chrM	+	686	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	2	894	2	-894	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTCGGATAACCATTGTTA	-1	True	NA	24	True	NA	NA	NA	1095	1781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_1800
94515	chr1	-	4395	8	FSM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	74	1229	47	-1229	multi-exon	FALSE	canonical	3	70	junction_3	8.90768986749708	20	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGAACTGTGGTATCTTC	NA	False	NA	NA	False	NA	NA	NA	171854788	171829755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
94516	chr4	-	4420	4	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	89	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGCAAATACTAGGCATGA	NA	False	NA	NA	False	NA	NA	NA	145180367	145136919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145136994_145138752_145138851_145176035_145177017_145177100
94517	chr19	-	2847	17	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2081	11	NA	NA	-3	-32	multi-exon	FALSE	non_canonical	0	0	junction_1	202.962194370651	1	40	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTCCTTCCGCCCTCCC	5995	False	NA	NA	False	NA	NA	NA	4251638	4242139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4242269_4242739_4242871_4243018_4243252_4243765_4243870_4244464_4244608_4245102_4246082_4246179_4246255_4246323_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
94518	chr18	+	4699	2	NNC	ENSMUSG00000024576.15	novel	2895	2	NA	NA	1889	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGAGAGGCTGGTTGTC	NA	False	NA	NA	False	NA	NA	NA	61717803	61723131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61721653_61722281
94519	chr7	+	1536	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	449	4	3	-4	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTCTTGGTGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	140462329	140478551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
94520	chrM	-	968	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCATCGGGTAATAATAAT	-66	True	NA	NA	False	NA	NA	NA	11544	10576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10600_11500
94521	chr8	+	2121	17	Antisense	novelGene_ENSMUSG00000031660.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	409	13	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCCAGGCCCAGGCCGTGC	5711	False	NA	NA	False	NA	NA	NA	89058938	89088611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_89059172_89059508_89059653_89060365_89060512_89060734_89060845_89063708_89063768_89066037_89066149_89069362_89069501_89070211_89070318_89071776_89071853_89072457_89072537_89073498_89073686_89078426_89078538_89081255_89081404_89084166_89084223_89084527_89084657_89088128_89088339_89088533
94522	chr14	-	2174	3	ISM	ENSMUSG00000022223.10	ENSMUST00000228151.2	385	4	327	-1847	28	-4	3prime_fragment	FALSE	canonical	3	161	junction_1	4.5	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCACTGGCTTCCGCTG	NA	False	NA	NA	False	NA	NA	NA	56137342	56134743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_56136763_56137103_56137187_56137270
94523	chr16	+	5244	2	NNC	ENSMUSG00000080717.11	novel	403	4	NA	NA	6502	35056	intron_retention	FALSE	canonical	0	0	junction_1	0	6	130	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTACATGGCTCATATTT	NA	False	NA	NA	False	NA	NA	NA	97816330	97868057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_97817029_97863511
94524	chrM	+	875	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	454	216	454	-216	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGATGCTTACACCACATG	4	True	NA	92	True	NA	NA	NA	5781	6656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6700
94525	chrM	+	1133	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	11	0	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	12	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATATCCATGTCTTGATA	-2	True	NA	87	True	NA	NA	NA	14144	15277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
94526	chr4	+	2747	3	ISM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	64599	7162	-379	1238	3prime_fragment	FALSE	canonical	3	63	junction_1	1.5	4	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCCCAATGCACATTCA	NA	False	NA	NA	False	NA	NA	NA	59690809	59754277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_59691339_59737561_59737735_59752232
94527	chr16	-	3443	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	35	6	0	6	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	2195	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATCCTCTGTAGTCTCCT	8675	False	NA	NA	False	NA	NA	NA	33787373	33775157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
94528	chr17	-	1899	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-7	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	3311.0717969329	374	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTCCTGCTCTCCTTG	NA	False	NA	NA	False	NA	NA	NA	45884188	45878704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879227_45880242_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
94529	chr19	-	2082	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	26	0	26	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	2	57	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3789	False	NA	NA	False	NA	NA	NA	7017309	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
94530	chr1	-	8241	36	NNC	ENSMUSG00000026491.14	novel	8506	36	NA	NA	19	-16	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_35	54.6994310308804	183	14	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACTGACAAGAGAAATACT	NA	False	NA	NA	False	NA	NA	NA	179631226	179572474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_179574094_179574744_179574822_179576121_179576256_179579875_179581638_179583013_179583220_179585499_179585595_179587826_179587927_179590109_179590528_179591034_179591239_179593442_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264_179605389_179607168_179607263_179608420_179608526_179609207_179609349_179610511_179610602_179611654_179611746_179612572_179612702_179613634_179613697_179614259_179614442_179614532_179614666_179615753_179615905_179617213_179617299_179617863_179617981_179619910_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179631147
94531	chrM	+	846	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	298	0	298	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	146	False	NA	-87	True	NA	NA	NA	14442	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
94532	chr14	+	1586	8	NNC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	2145	2594	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	64	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACGCAGGAGTACGTCACT	NA	False	NA	NA	False	NA	NA	NA	55916558	55919251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55916866_55916969_55917063_55917322_55917387_55917470_55917914_55918067_55918167_55918458_55918547_55918681_55918766_55918843
94533	chr11	+	5527	12	Antisense	novelGene_ENSMUSG00000040548.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	137	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGACTTTATCAATCCCTG	5261	False	NA	NA	False	NA	NA	NA	106392490	106504221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106394547_106397694_106397812_106402725_106402936_106404410_106404539_106410707_106410840_106420086_106420190_106424697_106424844_106434997_106435250_106437492_106437830_106439539_106439744_106457792_106459454_106504040
94534	chr13	-	2483	13	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2137.00922078549	9	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTATGACGTGTGCCCA	4778	False	NA	NA	False	NA	NA	NA	58550303	58539054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541566_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
94535	chr2	+	5555	12	Antisense	novelGene_ENSMUSG00000085699.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	107	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAAACTCTCATGATC	NA	False	NA	NA	False	NA	NA	NA	174901377	175179993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_174901737_174901778_174902247_174970759_174970922_175035703_175037214_175037885_175038011_175070843_175071310_175165791_175167841_175168997_175169058_175169262_175169390_175175005_175175113_175176416_175176471_175179925
94536	chr9	+	1730	8	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	68	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTCCAAGGCGACTGCCG	NA	False	NA	NA	False	NA	NA	NA	78385746	78388953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386816_78386904_78387057_78387133_78387433_78387524_78387710_78387797_78387968_78388917
94537	chr10	-	2718	2	Intergenic	novelGene_3482	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGATCCCCACCCCAACTA	NA	False	NA	NA	False	NA	NA	NA	74555798	74552973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74553131_74553237
94538	chr16	+	3567	10	NNC	ENSMUSG00000087354.2	novel	2675	2	NA	NA	1224	12790	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4268	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTATCCATCATGGAGC	NA	False	NA	NA	False	NA	NA	NA	90811832	90826421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_90812066_90813732_90813891_90816053_90816198_90818938_90819005_90819554_90819631_90820222_90820348_90822034_90822179_90822382_90822584_90823917_90824033_90824116
94539	chr17	+	2222	1	Antisense	novelGene_ENSMUSG00000117916.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATACAGATAGATAGTGGG	NA	False	NA	NA	False	NA	NA	NA	27454969	27457191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_27455000_27457200
94540	chr17	+	1766	4	NNC	ENSMUSG00000060149.8	novel	1598	4	NA	NA	28	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	16.6599986661331	3	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCATTTAATATTCCCAA	NA	False	NA	NA	False	NA	NA	NA	17171841	17194408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17171971_17191161_17191289_17191432_17191440_17192905
94541	chr4	+	2374	11	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	526	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGTTAGAAAAGAATAAA	255	False	NA	NA	False	NA	NA	NA	137469054	137486045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882
94542	chr2	+	4420	5	FSM	ENSMUSG00000078878.10	ENSMUST00000108981.9	1646	5	14	-2788	-13	2788	multi-exon	FALSE	canonical	3	21	junction_2	64.6006965906715	4	121	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	176400134	176416394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081_176411143_176412300
94543	chr18	-	6648	32	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	0	6313	intron_retention	FALSE	non_canonical	0	0	junction_1	539.724890417431	25	34	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGCACCGCGAACGGATT	NA	False	NA	NA	False	NA	NA	NA	34784771	34757690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767720_34769338_34769401_34769755_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
94544	chr4	+	1995	3	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-543	182328	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147416320	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147417000_147417084_147418073_147600191
94545	chr17	-	803	3	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4277	18	742	-18	3prime_fragment	FALSE	canonical	3	10930	junction_2	637.5	44	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	-107	True	NA	NA	NA	45879920	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783
94546	chr7	-	6502	27	NIC	ENSMUSG00000030516.15	novel	7049	28	NA	NA	83	0	intron_retention	FALSE	canonical	3	43	junction_1	33.0858664117024	234	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTAGTTTGGTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	65020680	64945912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_64947416_64949477_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65020557
94547	chr1	-	2912	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	73	46	21	-8	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGACTTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20890463	20873237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
94548	chr13	-	6008	4	NNC	ENSMUSG00000113135.2	novel	478	3	NA	NA	-13	3897	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	125.489264702426	100	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCACCTACCCCCCCACC	NA	False	NA	NA	False	NA	NA	NA	65768070	65759740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65761711_65761787_65763903_65764103_65765887_65767930
94549	chr18	+	7977	36	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	3518	9	NA	NA	16	-2	multi-exon	FALSE	canonical	3	11	junction_1	37.0423254878932	189	24	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGCTCCATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	36693055	36798968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_+_36693155_36708071_36708223_36711670_36711828_36714120_36714269_36716664_36716813_36722400_36722635_36724499_36724595_36727137_36727376_36727854_36728047_36733818_36733929_36744852_36744941_36746145_36746274_36746885_36747030_36747767_36747871_36757561_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788475_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
94550	chr11	+	2319	11	ISM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	319	86	319	-86	3prime_fragment	FALSE	canonical	3	513	junction_9	37.9406114869015	3	112	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTAAAAGTGTTCTGTAT	NA	False	NA	NA	False	NA	NA	NA	78219559	78233522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
94551	chr19	-	1173	8	NNC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	-9	1	intron_retention	FALSE	non_canonical	0	0	junction_1	389.092874910506	50	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATATGCTCATTCTGCTCA	5835	False	NA	NA	False	NA	NA	NA	46327086	46318981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_46319017_46319367_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320496_46321056_46321141_46326751
94552	chr6	+	2512	20	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	2425	5	combination_of_known_splicesites	FALSE	canonical	2	11	junction_5	59.7603246217084	158	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCATATTCTTTGCAAT	2629	False	NA	NA	False	NA	NA	NA	49374993	49446440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
94553	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
94554	chr17	-	3243	5	NIC	ENSMUSG00000095677.3	novel	771	5	NA	NA	27	-19	intron_retention	FALSE	canonical	3	20	junction_1	3213.26675674461	38	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTATTTCTAATACAGTTGT	NA	False	NA	NA	False	NA	NA	NA	6923272	6914019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_6914260_6914426_6917164_6917501_6917626_6920709_6920752_6923172
94555	chr13	+	2996	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-38	1317	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	91.7234293951115	8	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACCTTGACTTAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	66261255	66271967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66269386_66269637
94556	chr3	+	3567	4	Antisense	novelGene_ENSMUSG00000037922.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGCTGCAGTCCACATG	274	False	NA	NA	False	NA	NA	NA	135824328	135886645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_135824464_135824534_135824664_135824737_135826125_135884729
94557	chr5	-	5209	1	Intergenic	novelGene_741	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	138	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	89356961	89351752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_89351800_89357000
94558	chr13	+	2962	5	NNC	ENSMUSG00000095909.3	novel	1815	4	NA	NA	88	1316	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	107.892307418092	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	66267448	66271966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66267578_66267777_66267839_66269026_66269653_66269736_66270464_66270547
94559	chrX	-	5780	38	NNC	ENSMUSG00000015668.14	novel	813	8	NA	NA	-100637	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	193.221317977506	2079	32	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATACTACTGCTTGAATAT	NA	False	NA	NA	False	NA	NA	NA	99770811	99666493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491_99669680_99669772_99670192_99670306_99670423_99677442_99677634_99679287_99679381_99681887_99682055_99682280_99682377_99708340_99708449_99709269_99709454_99710984_99711092_99713512_99713577_99720892_99721023_99723448_99723511_99723614_99723719_99732661_99732721_99734119_99734304_99738474_99738581_99739603_99739747_99741034_99741147_99747646_99747729_99748394_99748508_99755395_99755554_99755667_99755767_99757481_99757612_99759184_99759362_99759878_99759983_99760934_99761013_99761540_99761640_99762097_99762276_99768246_99768362_99769730_99769855_99770062
94560	chr7	-	1663	9	NNC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	-15489	-5683	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12359	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCGGAAAAAGAGTACTG	NA	False	NA	NA	False	NA	NA	NA	44727590	44711911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44711954_44722911_44722986_44723402_44723512_44724029_44724110_44725490_44725651_44725731_44725849_44726046_44726164_44726244_44726353_44726734
94561	chr11	+	1063	1	ISM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	980	0	475	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442976	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_62443000_62444000
94562	chr6	-	2191	10	Antisense	novelGene_ENSMUSG00000046679.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCTGGAAAACGCACTTCC	NA	False	NA	NA	False	NA	NA	NA	86446979	86415667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_86415829_86420707_86420956_86422413_86423250_86424291_86424401_86426738_86426847_86430589_86430695_86434796_86434900_86439557_86439662_86442780_86442945_86446726
94563	chr9	-	2788	15	NIC	ENSMUSG00000042790.17	novel	3964	14	NA	NA	5	4	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	14.9340386434508	137	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCAGGTTCCATTTCTCC	9615	False	NA	NA	False	NA	NA	NA	45817680	45775592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_45776297_45777863_45777960_45778244_45778350_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
94564	chr13	+	968	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-17	-13	-17	13	mono-exon	FALSE	NA	NA	NA	NA	NA	3597	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAACTTTATTTATTTG	7945	False	NA	NA	False	NA	NA	NA	74554510	74555478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555500
94565	chr4	-	8662	17	Antisense	novelGene_ENSMUSG00000094177.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	116	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCGAGAATGCTGGAATG	NA	False	NA	NA	False	NA	NA	NA	145520930	145237358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237648_145239537_145239639_145311772_145311861_145312038_145312084_145314002_145314095_145343685_145343736_145347119_145347254_145348720_145348871_145349698_145352625_145352862_145354623_145354698_145354866_145354909_145355420_145408995_145409020_145410872_145411089_145460903_145461084_145518792_145518892_145519099
94568	chr17	+	1926	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	9	511	9	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	1	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135277	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
94569	chr14	+	5717	9	NNC	ENSMUSG00000041445.10	novel	3974	7	NA	NA	-10423	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	18.8015956769632	203	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTGTTTACTGTTG	981	False	NA	NA	False	NA	NA	NA	34086998	34126244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_34087676_34088315_34088446_34096485_34097736_34118121_34118251_34118328_34118436_34118515_34118597_34119503_34119678_34119786_34121581_34124869
94570	chr12	-	5667	5	Intergenic	novelGene_4339	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	9.836157786453	167	66	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTGGGGAACGCCAGGGC	NA	False	NA	NA	False	NA	NA	NA	24401635	24383137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_24388038_24388457_24388916_24390254_24390316_24390513_24390641_24401514
94571	chr4	+	3233	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	3	334	multi-exon	FALSE	non_canonical	0	0	junction_1	43.4506522813348	4	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTGTTTTACATATGGTG	NA	False	NA	NA	False	NA	NA	NA	147216497	147669989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578927_147639766_147639926_147661481_147661587_147665698_147665826_147667290_147667431_147667838
94572	chr3	-	5863	12	NNC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	787	6145	intron_retention	FALSE	non_canonical	0	0	junction_1	0.287479787288034	51	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGGCTTAAAGGGGCGGAC	NA	False	NA	NA	False	NA	NA	NA	89119909	89110242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89110392_89110496_89110666_89110776_89110848_89111290_89111481_89111578_89111728_89112752_89112882_89113092_89113272_89113440_89113675_89114532_89114758_89115129_89115289_89115612_89115735_89115822
94574	chr7	-	2002	19	NNC	ENSMUSG00000030766.16	novel	3336	20	NA	NA	6	69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	71.869845494185	1	33	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGCGCCCGAAGCCCAT	NA	False	NA	NA	False	NA	NA	NA	122969093	122886139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896763_122899707_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913705_122913862_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
94575	chr14	+	1253	3	Intergenic	novelGene_547	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_2	3	2	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTGGTCAGACAGCTTAA	NA	False	NA	NA	False	NA	NA	NA	41308722	41329609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_41308811_41314264_41314409_41328588
94577	chr9	-	1419	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4740.55454432866	616	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCTGTGTTGGTCAATG	7153	False	NA	NA	False	NA	NA	NA	78388953	78385738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78385900_78386312_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
94578	chr8	+	8580	48	NNC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-86572	-2179	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	124	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTAGCAAGGAGCACCAG	NA	False	NA	NA	False	NA	NA	NA	96446799	96534650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96447112_96447268_96447388_96448161_96448266_96449911_96450092_96451141_96451292_96452640_96452816_96454209_96454307_96455236_96455364_96455714_96455874_96457038_96457290_96459719_96459955_96460607_96460777_96460868_96460975_96462310_96462456_96462880_96463076_96466437_96466554_96467355_96467462_96467555_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471267_96471568_96471681_96472201_96472318_96473598_96473779_96474884_96475028_96475471_96475700_96478364_96478448_96479129_96479415_96479651_96479779_96481592_96481740_96482719_96482922_96483969_96484119_96486725_96486878_96487130_96487253_96487949_96488070_96489616_96489854_96491078_96491781_96496128_96496242_96496373_96496499_96497169_96497339_96498599_96498809_96500065_96500110_96500194_96500268_96501257_96501357_96501906_96502015_96515257_96515535_96533962
94579	chr10	-	2395	5	FSM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	-54	-6	-54	6	multi-exon	FALSE	canonical	3	13	junction_4	8.20060973342836	69	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGCGCCTCTACTGTTG	5683	False	NA	NA	False	NA	NA	NA	128640293	128635898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640101
94580	chr13	-	4077	2	Antisense	novelGene_ENSMUSG00000045767.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	324	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCTTGTAAGACAAGTGC	NA	False	NA	NA	False	NA	NA	NA	55851313	55758791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55758855_55847299
94581	chrX	+	3521	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	27	16	27	-3	multi-exon	FALSE	canonical	3	108	junction_4	93.2983708932913	8	138	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCTTCCATTTCTACTT	421	False	NA	NA	False	NA	NA	NA	20483887	20517124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
94582	chr17	-	2279	5	NIC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	32	-384	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	732.597220510698	4	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTTAGCCCAGACACTAA	4858	False	NA	NA	False	NA	NA	NA	25179578	25161827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179465
94584	chr9	+	2074	3	NNC	ENSMUSG00000097111.2	novel	1264	2	NA	NA	-30145	-8468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTAGAAGCTTTGCTC	NA	False	NA	NA	False	NA	NA	NA	56135028	56166596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56135136_56148447_56148629_56164810
94585	chr4	-	1505	2	Genic_Genomic	ENSMUSG00000081260.2	novel	339	1	NA	NA	-68	198645	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACATCATGAAGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	147033023	146833971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_146835025_147032571
94586	chr5	+	3993	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-4	intron_retention	FALSE	canonical	0	0	junction_3	625.383865791113	2	36	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCTAATGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241957_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
94587	chr5	+	7655	6	Intergenic	novelGene_765	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	19.1666376811375	12	124	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAACTTTACTTTCTCCA	NA	False	NA	NA	False	NA	NA	NA	104719575	104792848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104719646_104757149_104757425_104783724_104783852_104784093_104784155_104785404_104786775_104787096
94588	chr8	+	3432	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	205	-2095	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	751.072373343608	1	128	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111760752	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760900_111763548_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
94589	chr8	+	4640	5	NNC	ENSMUSG00000096401.3	novel	930	5	NA	NA	-14516	-297	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	485.575624903063	19	62	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGTTCGATTTTAAAC	NA	False	NA	NA	False	NA	NA	NA	20697586	20726969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20697782_20711891_20712098_20717197_20717497_20721120_20721241_20723149
94590	chr13	+	5018	3	Intergenic	novelGene_1415	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCTCTTCTTCCTGAAAT	NA	False	NA	NA	False	NA	NA	NA	65627713	65632987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65628516_65628570_65628767_65628967
94591	chr3	+	4946	11	Antisense	novelGene_ENSMUSG00000105412.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	41	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGGTCCCCCGCCCCCCT	6819	False	NA	NA	False	NA	NA	NA	94406121	94489869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_94409537_94410162_94410292_94410765_94410913_94418342_94418438_94426353_94426519_94427494_94427572_94431490_94431598_94436218_94436286_94438504_94438700_94469076_94469307_94489550
94592	chr2	-	904	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11406	192	multi-exon	TRUE	non_canonical	0	0	junction_1	0	148	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	11426247	11413649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414149_11425842
94593	chr2	+	2327	9	Fusion	ENSMUSG00000059005.14_ENSMUSG00000093242.4	novel	1074	10	NA	NA	-4	-4	intron_retention	FALSE	canonical	3	3726	junction_1	2270.23924950654	13	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGCTGTTTGGTTTTTGT	7490	False	NA	NA	False	NA	NA	NA	75489619	75496461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
94594	chr4	-	3167	4	Antisense	novelGene_ENSMUSG00000060206.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCGGACGCGGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	55011061	54945079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_54945100_55007345_55007433_55007528_55007780_55008252
94595	chr12	-	2611	12	NNC	ENSMUSG00000113585.2	novel	662	3	NA	NA	-85451	-1495	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	65	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACAGGCACGCTCCGTCT	NA	False	NA	NA	False	NA	NA	NA	110538093	110451898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110452385_110488922_110489124_110510507_110510618_110512026_110512120_110512202_110512334_110517493_110517554_110519216_110519325_110521273_110521331_110527731_110527896_110534154_110534290_110535387_110535490_110537129
94596	chr4	-	1663	10	Antisense	novelGene_ENSMUSG00000073775.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	636	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTATCCTCTGATTATC	4538	False	NA	NA	False	NA	NA	NA	108719309	108540315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108540506_108570709_108570712_108686919_108687092_108691842_108692053_108703146_108703205_108710361_108710417_108713342_108713417_108715119_108715191_108716470_108716554_108718561
94597	chr17	+	5533	21	ISM	ENSMUSG00000068036.17	ENSMUST00000139666.8	7732	33	74757	356	-15657	0	3prime_fragment	FALSE	canonical	1	133	junction_9	62.0168525483195	209	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTTTGTCCCTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	14055566	14126056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_14055619_14066533_14066596_14066695_14066902_14069369_14069516_14069829_14069925_14071041_14071308_14072577_14072722_14075475_14075675_14080134_14080239_14082030_14082118_14101546_14101613_14102112_14102187_14102644_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116485_14119206_14119490_14122791_14122877_14124115
94598	chr17	+	3404	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	593.12005727656	7	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	NA	False	NA	NA	NA	56610399	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617790_56619109_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
94599	chr3	+	3744	3	Antisense	novelGene_ENSMUSG00000037922.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGCTGCAGTCCACATG	274	False	NA	NA	False	NA	NA	NA	135824328	135886645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_135824459_135824511_135825482_135884001
94600	chr4	-	2467	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	45	10	45	-10	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	6	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGGCCAGAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	137523650	137469053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
94601	chr5	-	1274	1	Intergenic	novelGene_881	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCCAGCTGAGATTAGCA	NA	False	NA	NA	False	NA	NA	NA	143837622	143836348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_143836300_143837600
94602	chr4	+	2699	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-1907	-234	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	233.962960031426	15	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	3112	False	NA	NA	False	NA	NA	NA	145239546	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145239651_145257381_145257486_145261385_145261513_145263160
94603	chr6	+	2041	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	99	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2190.83823855163	333	78	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTAGTGGTCTTATCTTT	NA	False	NA	NA	False	NA	NA	NA	122684625	122691586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684775_122684836_122684893_122688496_122688763_122689587_122689675_122690103
94604	chr12	-	1267	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	195	20	38	-20	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTGTGCTCAACTGCT	8659	False	NA	NA	False	NA	NA	NA	85421426	85389581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
94606	chr17	-	2292	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-152	0	combination_of_known_junctions	FALSE	canonical	3	109	junction_13	684.125062098821	32	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	NA	False	NA	NA	NA	45910684	45896128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45910398
94607	chr12	-	1809	12	NIC	ENSMUSG00000021240.7	novel	2581	19	NA	NA	-928	-3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	69.4014551970712	1	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACTGGTGACATTTCAC	NA	False	NA	NA	False	NA	NA	NA	84659607	84649416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098
94608	chr14	-	4584	2	NNC	ENSMUSG00000040701.17	novel	2307	19	NA	NA	-1655	3488	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACCCGGAAGTGGGGGAA	NA	False	NA	NA	False	NA	NA	NA	55338500	55332543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55333463_55334835
94609	chr7	-	6497	27	FSM	ENSMUSG00000030516.15	ENSMUST00000032729.8	6102	27	148	-543	148	0	multi-exon	FALSE	canonical	3	136	junction_1	23.0143060730422	236	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTAGTTTGGTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	65020615	64945912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_64947416_64949417_64949562_64950813_64951032_64952491_64952967_64956117_64956285_64960751_64960980_64962081_64962180_64962302_64963173_64964406_64964758_64967734_64967836_64968111_64968323_64968997_64969081_64972027_64972124_64972241_64972427_64972702_64972923_64973736_64973846_64976009_64976161_64978671_64978778_64979373_64979514_64985779_64985928_64986244_64986414_64986790_64986895_64989897_64990175_64992364_64992468_64993362_64993488_65004579_65004637_65020557
94610	chr9	-	6186	15	NIC	ENSMUSG00000032507.16	novel	3464	15	NA	NA	9	2728	intron_retention	FALSE	canonical	2	4	junction_8	11.884649677596	55	57	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGCCTGACACTGTCGTA	NA	False	NA	NA	False	NA	NA	NA	113855785	113803046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818543_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113855760
94611	chr10	+	1808	1	Intergenic	novelGene_3522	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACTTCCCAAACATAAAA	NA	False	NA	NA	False	NA	NA	NA	107682017	107683825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_107682000_107683800
94612	chr2	+	1284	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11386	216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	654	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11413648	11426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414484_11425798
94613	chr4	+	3667	23	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	22	2609	intron_retention	FALSE	non_canonical	0	0	junction_14	445.136595713018	823	31	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGGCGGGGCGCTTGCAC	10003	False	NA	NA	False	NA	NA	NA	155954045	155976169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972571_155972640_155972784_155972852_155972983_155973076_155973624_155973888_155974051_155974120_155974364_155974955_155975123_155975200_155975362_155975509_155975696_155975813
94614	chr4	+	4864	11	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	3	83825	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	112.998938048107	127	106	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGGGTGATTTGCAATC	NA	False	NA	NA	False	NA	NA	NA	147576876	147681768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597189_147598027_147598418_147598750_147598969_147599053_147599561_147600725_147603386_147610066_147610199_147681606
94615	chr14	+	1861	10	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	-19	1262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2369.69959548452	5	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTTGACATTGGCAGG	NA	False	NA	NA	False	NA	NA	NA	63359943	63380574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63359964_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
94616	chr5	-	2353	2	FSM	ENSMUSG00000047215.15	ENSMUST00000151917.6	431	2	-1927	5	-8	-4	multi-exon	FALSE	canonical	3	8565	junction_1	0	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTGTGTGTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	65548184	65545711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_65545785_65545904
94617	chr2	+	2546	8	Fusion	ENSMUSG00000059005.14_ENSMUSG00000093242.4	novel	1140	10	NA	NA	-2	1172	multi-exon	FALSE	canonical	0	0	junction_7	3834.94859077375	41	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTCCTTTTATTCATA	7492	False	NA	NA	False	NA	NA	NA	75489621	75497637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493243_75495924
94618	chr2	+	1550	5	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-1	83	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_3	91.4176542031133	193	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAGAAAGAAGCTAGAA	NA	False	NA	NA	False	NA	NA	NA	104389527	104399260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389830_104390068_104390321_104397520_104397622_104398205_104398836_104398995
94619	chr10	-	3162	17	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-310	-16	combination_of_known_junctions	FALSE	canonical	3	15	junction_16	179.737384379961	2	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAAAGCTCTCCTCACTG	NA	False	NA	NA	False	NA	NA	NA	116416753	116321086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116416385
94621	chr11	-	3134	3	Intergenic	novelGene_2335	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	40.5	2	71	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACAAGACCGTTTTCTCG	NA	False	NA	NA	False	NA	NA	NA	57450923	57445639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446486_57448541_57450430_57450523
94623	chr9	-	1595	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4690.5121168554	87	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATGAGAAATCTGTGTTG	7153	False	NA	NA	False	NA	NA	NA	78388953	78385745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386690_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
94624	chr17	+	3578	8	NNC	ENSMUSG00000068036.17	novel	5418	32	NA	NA	495	-109	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	142.147236113453	2	44	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTATTTGCTATTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	14102642	14125947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_14102764_14104002_14104198_14104830_14104923_14105583_14105770_14108243_14109240_14116349_14116454_14122824_14122877_14124115
94625	chr15	+	7280	29	NIC	ENSMUSG00000058290.5	novel	6658	31	NA	NA	25	0	intron_retention	FALSE	canonical	3	251	junction_5	49.2031788213165	266	112	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTGAGAGTTGAAGCTA	423	False	NA	NA	False	NA	NA	NA	102204764	102232792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102225327_102225484_102225647_102227846_102228061_102228137_102228329_102228847_102228976_102229078_102229202_102230759_102230916_102231010_102231182_102231302_102231408_102231589_102231706_102231884_102231969_102232077_102232243_102232442
94626	chr6	-	3569	9	FSM	ENSMUSG00000029826.15	ENSMUST00000114898.3	3052	9	37	-554	37	554	multi-exon	FALSE	canonical	1	2	junction_5	27.0081006366608	33	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCTGCTTTTCAACTATT	9701	False	NA	NA	False	NA	NA	NA	38331501	38292048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309424_38310124_38313346_38313600_38317154_38317291_38330849
94628	chr6	-	5459	4	Genic_Genomic	ENSMUSG00000107802.2	novel	725	5	NA	NA	12905	6145	multi-exon	FALSE	non_canonical	0	0	junction_1	0	212	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAATGAACTGTACGTCAC	8089	False	NA	NA	False	NA	NA	NA	143154269	143140977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_143141039_143143127_143143291_143148803_143148876_143149106
94629	chr15	+	1910	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	27	5	27	-5	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	18	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGTTTGTGGTCTCATT	NA	False	NA	NA	False	NA	NA	NA	78959405	78978600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
94630	chr1	+	6466	20	Antisense	novelGene_ENSMUSG00000102960.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	173	28	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGATCCACCCCGGCCGC	NA	False	NA	NA	False	NA	NA	NA	156632004	156767178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_156635522_156635684_156636762_156639012_156639109_156641009_156641114_156645310_156645406_156647383_156647491_156651562_156651615_156655708_156655862_156656541_156656697_156657952_156658022_156660233_156660326_156660464_156660602_156697009_156697138_156712102_156712196_156714660_156714749_156715514_156715600_156728154_156728209_156729356_156729461_156735208_156735351_156767060
94631	chr2	+	1267	1	Intergenic	novelGene_2835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGCCGGGCAATGATGGT	NA	False	NA	NA	False	NA	NA	NA	174818494	174819761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_174818500_174819800
94632	chrX	-	1564	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1571.59447297959	1	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642027	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634958_135635186_135635251_135636296_135636372_135640553_135640644_135641958
94633	chr4	-	4029	4	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTACAAGGAGAATGCTGA	NA	False	NA	NA	False	NA	NA	NA	147419851	147395013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147395143_147409225_147409332_147415721_147416955_147417290
94634	chr4	+	4270	7	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	3038	5	NA	NA	-84	63452	multi-exon	FALSE	non_canonical	0	0	junction_5	175.680976646749	1302	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAACTATTTCTCATAAAGT	NA	False	NA	NA	False	NA	NA	NA	146586399	146806069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146586602_146697966_146698060_146797298_146797381_146800390_146800518_146802050_146803197_146803365_146803919_146804002
94635	chr16	+	6127	31	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-37	-305	combination_of_known_junctions	FALSE	canonical	3	139	junction_4	92.8546295142155	617	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTGATATTATGATTCT	NA	False	NA	NA	False	NA	NA	NA	29398114	29473397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
94636	chr5	-	1939	6	ISM	ENSMUSG00000001166.18	ENSMUST00000117193.8	2291	7	3718	23	3692	-23	3prime_fragment	FALSE	canonical	1	2	junction_5	2.78567765543682	22	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCACTGACTCGAACTCA	8598	False	NA	NA	False	NA	NA	NA	120946861	120938281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_120939129_120940105_120940260_120940886_120941123_120943468_120943666_120946024_120946314_120946645
94637	chr15	+	3324	16	NIC	ENSMUSG00000022394.15	novel	3487	17	NA	NA	4	-3	intron_retention	FALSE	canonical	0	0	junction_15	174.005236191967	138	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGATGATATCAGATG	NA	False	NA	NA	False	NA	NA	NA	81548138	81572513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81571140
94638	chr2	-	3128	22	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	4	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	182.342989956824	543	23	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	120234546	120185792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120218869_120219021_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120228921_120229029_120233190_120233252_120234385
94640	chr1	-	4907	21	NIC	ENSMUSG00000026516.9	novel	9392	23	NA	NA	33	-162	intron_retention	FALSE	canonical	2	24	junction_9	150.52251492717	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATATCTATTAACATCTG	NA	False	NA	NA	False	NA	NA	NA	180971736	180920985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_180921475_180922548_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
94641	chr5	+	2819	5	NNC	ENSMUSG00000018604.19	novel	4777	8	NA	NA	2102	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	433.912649619713	3	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	NA	False	NA	NA	NA	119815611	119822789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_119815643_119816745_119816898_119818459_119819131_119820695_119821806_119821934
94643	chr7	+	1186	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-11	57	-11	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	6	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCTAGGGAGCCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	51396383	51397569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
94644	chr15	+	4087	5	NIC	ENSMUSG00000022407.11	novel	1932	11	NA	NA	752	17	intron_retention	FALSE	canonical	3	986	junction_1	75.4486580397558	5	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACATTAAGTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	80846165	80853337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80846988_80847860_80850384_80851312_80851403_80851789_80851967_80852862
94645	chrX	-	1699	3	NNC	ENSMUSG00000031422.17	novel	1782	3	NA	NA	8	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAATGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	135642017	135633700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135635251_135640549_135640647_135641965
94646	chr11	-	2665	16	NIC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	678	junction_10	72.5416661880146	22	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	NA	False	NA	NA	NA	70860799	70833902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
94647	chr17	-	2565	14	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	6867	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.751002717038	1	98	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGTAGCCTTTTG	9247	False	NA	NA	False	NA	NA	NA	45737600	45702815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703233_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445
94648	chr11	-	2584	18	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	-6	-7	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_9	279.238348661716	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAGTTTGAATAAATT	NA	False	NA	NA	False	NA	NA	NA	70860712	70833934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840098_70840369_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
94649	chr7	-	3941	8	NIC	ENSMUSG00000041328.17	novel	5995	16	NA	NA	270	-10606	combination_of_known_junctions	FALSE	canonical	3	46	junction_1	34.8208241705788	1	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAGAGCTTCTGGACAC	NA	False	NA	NA	False	NA	NA	NA	92318841	92306631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_92308075_92308612_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
94650	chr2	-	2509	13	NNC	ENSMUSG00000025816.16	novel	2448	12	NA	NA	-46	5	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_7	105.759948310628	641	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTCTCTAAGAGTATTTC	NA	False	NA	NA	False	NA	NA	NA	5900191	5875792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5884403_5884512_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
94651	chr7	-	5907	2	ISM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	31	5105	31	-5105	5prime_fragment	FALSE	canonical	3	32	junction_1	0	12	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGTCAGGCCCGAGGTTT	NA	False	NA	NA	False	NA	NA	NA	75431816	75424614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_75430505_75431799
94652	chr10	+	5458	13	FSM	ENSMUSG00000020185.17	ENSMUST00000073781.12	5473	13	-6	21	-3	-21	multi-exon	TRUE	canonical	3	19	junction_6	6.98808509774554	116	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTAAGACGTGTATGTT	NA	False	NA	NA	False	NA	NA	NA	110581322	110623224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_110581541_110582192_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977_110603113_110610502_110610689_110611179_110611250_110614679_110615164_110616627_110616884_110618058_110618481_110620528
94653	chr15	-	2700	5	ISM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	3546	1	1422	-1	3prime_fragment	FALSE	canonical	3	3946	junction_3	159.548386077704	2	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATGAGTCTCAGTGGTG	3285	False	NA	NA	False	NA	NA	NA	36791236	36771014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927
94654	chr5	-	1841	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-53	-2	intron_retention	TRUE	non_canonical	0	0	junction_1	1537.10969752397	11	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8836	False	NA	NA	False	NA	NA	NA	142892562	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889265_142889394_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
94656	chr15	-	4744	15	NNC	ENSMUSG00000022353.11	novel	4938	15	NA	NA	-46	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_14	23.3855222960965	16	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTCTCAGGTCTCCTTCA	2683	False	NA	NA	False	NA	NA	NA	58953900	58813084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_58815980_58817165_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304_58953428_58953714
94657	chr3	+	3069	26	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_15	135.116151514169	603	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGTGTCTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	54600244	54636182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
94658	chr4	+	2807	6	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.877380297628	588	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGATTGTTTCCAA	924	False	NA	NA	False	NA	NA	NA	145237358	145265757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237410_145239538_145239670_145257370_145257486_145261385_145261513_145263160_145265498_145265711
94659	chr5	-	2162	4	ISM	ENSMUSG00000041890.18	ENSMUST00000146044.8	3707	6	8684	2399	-1018	60	3prime_fragment	FALSE	canonical	3	223	junction_1	8.64098759787715	2	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCAGCAGCAGCATCCGT	NA	False	NA	NA	False	NA	NA	NA	114873245	114867870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921
94660	chr7	+	1154	7	Antisense	novelGene_ENSMUSG00000030695.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	440	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAATGCTTCCTGAAGGGA	NA	False	NA	NA	False	NA	NA	NA	126394408	126396709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505
94661	chr11	+	6393	32	NNC	ENSMUSG00000020721.17	novel	3753	14	NA	NA	-1083	-5	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	36.7501052969107	153	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTGTATTGTTACATAT	9335	False	NA	NA	False	NA	NA	NA	107437672	107577764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107437878_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107518178_107518281_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552859_107554433_107554642_107556824_107556905_107560860_107561498_107561872_107562108_107563354_107563872_107576116_107576370_107577210
94662	chr9	+	4518	16	NNC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	-4	-50	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	33.8830668951649	43	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAATGTGTTTGTCATTT	4699	False	NA	NA	False	NA	NA	NA	69305234	69340354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_69305782_69306227_69306370_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
94663	chr5	+	2775	1	ISM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	78745	2	23679	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	94	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTGTGTGCCCGTTTG	NA	False	NA	NA	False	NA	NA	NA	93320040	93322815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_93320000_93322800
94664	chr19	+	3568	5	Intergenic	novelGene_1301	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	5.62916512459885	14	24	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAAGTGTGCTCAGCAAT	NA	False	NA	NA	False	NA	NA	NA	61140043	61174492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_61140397_61167407_61167535_61167722_61167784_61171213_61172209_61172460
94665	chr13	-	2404	5	NNC	ENSMUSG00000074865.12	novel	2439	5	NA	NA	0	-3	intron_retention	FALSE	canonical	0	0	junction_3	31.751968442917	370	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAAGCTTGTGTGTGGACC	NA	False	NA	NA	False	NA	NA	NA	62706426	62664613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62686180_62686340_62706300
94667	chr4	+	2872	4	FSM	ENSMUSG00000065999.14	ENSMUST00000139784.8	628	4	-22	-2222	-22	150	multi-exon	FALSE	canonical	3	55	junction_1	19.7540431867054	12	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTGGTGGATAACAATCT	NA	False	NA	NA	False	NA	NA	NA	147637711	147669805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290
94668	chr9	-	1592	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	54	-25	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5990.46978158488	33	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAACAAGTTTAATGAGAA	7154	False	NA	NA	False	NA	NA	NA	78388952	78385755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386175_78386353_78386475_78386559_78386790_78386921_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
94669	chr2	+	2333	7	NNC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	-2002	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	109.093868857155	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGATTTTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	128955589	128968515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_128955703_128957558_128957693_128959847_128960019_128960959_128961122_128965069_128965187_128965630_128965885_128967133
94670	chr13	+	5895	27	NNC	ENSMUSG00000089875.3	novel	4862	2	NA	NA	1910	47676	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	132	13	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCGCTGCGGTCCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	59919689	59970897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59920671_59929828_59930161_59932578_59932694_59933533_59933627_59933708_59933761_59936275_59936452_59936997_59937076_59937225_59937340_59937661_59937755_59939592_59939693_59942259_59942325_59944638_59944737_59945485_59945571_59946811_59946963_59947454_59948531_59949829_59950009_59953034_59953190_59955859_59955980_59957191_59957322_59958386_59958455_59959328_59959381_59962679_59962775_59963366_59963541_59964087_59964202_59964471_59964659_59969376_59969938_59970446
94671	chr6	-	2260	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	59	342	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	3298.29405943123	1	91	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGTCAGTTGCTAATGTT	19	True	NA	NA	False	NA	NA	NA	7693195	7674826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685405_7689251_7689502_7693108
94672	chr17	+	1680	4	Antisense	novelGene_ENSMUSG00002076004.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	13	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGCAGAGGTGGTGACGG	NA	False	NA	NA	False	NA	NA	NA	64615429	64638922	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_64616656_64618162_64618360_64619988_64620113_64638789
94673	chr5	+	3290	12	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-8	intron_retention	FALSE	canonical	0	0	junction_3	677.355589805917	23	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAAGAGCTAATGAGT	NA	False	NA	NA	False	NA	NA	NA	108208601	108256862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248855_108254860
94674	chr3	+	3776	30	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-577	31034	multi-exon	FALSE	non_canonical	0	0	junction_1	0	330	15	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGCCGCGCCGCCCCTGTC	NA	False	NA	NA	False	NA	NA	NA	89907844	89959786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908299_89909124_89909176_89909585_89909784_89910551_89910623_89915565_89915666_89916413_89916634_89917738_89917821_89919991_89920047_89922436_89922525_89922607_89922805_89924005_89924079_89924421_89924530_89924572_89924587_89925704_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935681_89938598_89938677_89941370_89941485_89941961_89942006_89945674_89945773_89946154_89946324_89951006_89951118_89952160_89952238_89955075_89955207_89959761
94675	chr2	-	3542	3	NIC	ENSMUSG00000027342.15	novel	589	5	NA	NA	82	-133	intron_retention	FALSE	canonical	3	2404	junction_2	58	21	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTCATAGAGCAGTGC	8307	False	NA	NA	False	NA	NA	NA	132095152	132091214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132093359_132093610_132093679_132093822
94676	chr13	+	860	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	-14	-51	-14	51	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCAGTTGTAGCAT	NA	False	NA	NA	False	NA	NA	NA	108807122	108807982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108807100_108808000
94677	chr3	+	4705	25	NIC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	-4	-7	intron_retention	FALSE	canonical	3	324	junction_5	66.1075381270716	82	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCAGTCGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	54600521	54636176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
94678	chr5	+	4289	28	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1018	10	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCGGGCCGGCACTTCC	NA	False	NA	NA	False	NA	NA	NA	100509507	100564093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516210_100521236_100521575_100523066_100523190_100523818_100523911_100526684_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533987_100534063_100536389_100536470_100536925_100536966_100538617_100538687_100540247_100540490_100540722_100540875_100541061_100541221_100543657_100543760_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555136_100555887_100555973_100563961
94679	chr5	+	2229	9	NIC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	47	2	intron_retention	FALSE	canonical	3	253	junction_8	16.6282891483159	4	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATGTTTAAATATTTTT	NA	False	NA	NA	False	NA	NA	NA	135398891	135405654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404553_135404729
94680	chr16	+	3028	9	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	675	junction_8	441.037820798852	2	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927602_22927869_22928010_22928734_22928904_22928983_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
94681	chr17	-	2272	3	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5086.5	51	48	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTGGAAAAAGGCTGTGA	NA	False	NA	NA	False	NA	NA	NA	36149124	36144824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146774_36147541_36147629_36148888
94683	chr16	-	3907	19	FSM	ENSMUSG00000022789.16	ENSMUST00000096229.11	3966	19	46	13	-27	0	multi-exon	FALSE	canonical	3	21	junction_16	431.23241420576	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGCCAGTAAGTGAATT	NA	False	NA	NA	False	NA	NA	NA	16176756	16130109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16160560_16160600_16163861_16164010_16176627
94684	chr5	+	3997	17	Antisense	novelGene_ENSMUSG00000055204.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTATGGCCACCCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	90391548	90433444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_90392353_90398232_90398379_90400721_90400882_90401353_90401804_90402500_90402671_90406292_90406409_90407942_90408039_90411116_90411280_90411848_90412030_90412490_90412700_90413289_90413431_90416188_90416335_90416494_90416611_90426103_90426253_90430711_90431465_90432901_90432999_90433344
94685	chr5	+	311	1	Intergenic	novelGene_903	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCGGAGGATTCAACCCG	NA	False	NA	NA	False	NA	NA	NA	146197788	146198099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
94687	chr2	+	4036	6	Fusion	ENSMUSG00000078864.11_ENSMUSG00000078866.11	novel	1077	4	NA	NA	15	2732	multi-exon	FALSE	canonical	0	0	junction_1	92.3783524425501	1	112	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCGACTTCCTTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	177156540	177414997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177156614_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
94688	chrM	+	800	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	156	1	156	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	80	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATATGTCTGATAAAAGA	48	False	NA	4	True	NA	NA	NA	2906	3706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2900_3700
94689	chr11	-	4826	1	Genic_Genomic	ENSMUSG00000057286.7	novel	NA	NA	NA	NA	3184	3634	mono-exon	FALSE	NA	NA	NA	NA	NA	16	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGAGATCGCGCTTGCGCG	NA	False	NA	NA	False	NA	NA	NA	116567320	116562494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_116562500_116567300
94690	chr10	-	1956	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	2	1	2	-1	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	3	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATGTCTTACTGATCTG	NA	False	NA	NA	False	NA	NA	NA	116899717	116886906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
94691	chr4	-	3246	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	19	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.667916557158	756	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994028	146912352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913320_146913571_146914284_146976159_146977116_146978205_146978333_146982168_146982273_146989292_146989426_146991977_146992072_146993875
94692	chr12	+	3167	6	Intergenic	novelGene_4301	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	16.1740532953246	46	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGTATTTTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	18687941	19127637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_18688063_18920412_18920540_18920741_18920803_18922243_18923873_18924394_18925242_19127255
94693	chr11	-	1414	7	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2456	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCGGCCTCCGCCGGA	NA	False	NA	NA	False	NA	NA	NA	48696904	48691186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691398_48692487_48692662_48693099_48693246_48694228_48694325_48694682_48694794_48694980_48695123_48696370
94694	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
94695	chr9	-	4639	2	Intergenic	novelGene_1113	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	634	20	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGAAATTGTCTTAGCT	182	False	NA	NA	False	NA	NA	NA	75643047	75637750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_75637961_75638618
94696	chr2	-	6969	20	NNC	ENSMUSG00000086216.2	novel	951	2	NA	NA	1848	31785	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	334	31	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGTGAAGCTTCCTGGA	NA	False	NA	NA	False	NA	NA	NA	32124546	32091008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_32091034_32094021_32094335_32096345_32096590_32098648_32098842_32102080_32102301_32106054_32106246_32106623_32106765_32107202_32107346_32108686_32108768_32109223_32109415_32109548_32109749_32110101_32110189_32111091_32111191_32111350_32111548_32112299_32112397_32113427_32113556_32113937_32114180_32116240_32116397_32116951_32117047_32120620
94697	chr16	+	3579	6	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	1	4	intron_retention	FALSE	canonical	3	441	junction_1	741.256878551559	6	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTCACTTTATATAGGT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927602_22928734_22929094_22929329_22930014_22930252_22930343_22930566
94698	chr11	-	3518	15	FSM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	42	0	-3	0	multi-exon	FALSE	canonical	3	566	junction_10	130.748239149965	6	96	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	NA	False	NA	NA	NA	95201030	95165084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
94699	chr8	+	2436	5	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-31	2265	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	23.6999472573253	1	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTTGCCTTGGTCGTGG	NA	False	NA	NA	False	NA	NA	NA	129990090	130011590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_129990206_130007503_130007631_130007817_130007879_130008956_130010643_130011143
94700	chr5	-	1146	1	FSM	ENSMUSG00000094708.2	ENSMUST00000180167.2	1002	1	45	-189	45	189	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	106011523	106010377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_106010400_106011500
94701	chr2	+	3689	9	NNC	ENSMUSG00000027522.16	novel	3865	9	NA	NA	0	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	38.2914399703119	126	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATAAAGCAATCTCACA	NA	False	NA	NA	False	NA	NA	NA	173918110	173941532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_173918176_173918916_173918988_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
94702	chr3	+	4178	20	NIC	ENSMUSG00000068823.11	novel	4318	20	NA	NA	-2	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	5044.85652659828	10	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACTAGCACCTAGCGCTT	NA	False	NA	NA	False	NA	NA	NA	102927925	102965495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951893_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
94703	chr5	+	313	1	Intergenic	novelGene_904	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1233	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGAGGATTCAACCCGGC	NA	False	NA	NA	False	NA	NA	NA	146197788	146198101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
94704	chr11	-	4269	5	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	-250	0	intron_retention	FALSE	non_canonical	0	0	junction_1	560.391994500278	5	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96719031	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96708453_96708652_96711343_96712076_96712236_96712929_96713146_96718023
94705	chr2	-	2709	5	NIC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	140	-15	intron_retention	FALSE	canonical	3	1968	junction_1	228.570968191501	15	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAGTTTATGTAATTACG	8365	False	NA	NA	False	NA	NA	NA	132095094	132091096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_132091616_132091693_132093359_132093610_132093679_132093822_132093921_132094735
94706	chr5	+	4855	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	23	-1175	23	1175	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	761	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAAGACAGATCACTGG	NA	False	NA	NA	False	NA	NA	NA	45827283	45859063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
94707	chr13	+	5565	27	NNC	ENSMUSG00000089875.3	novel	4862	2	NA	NA	1910	47689	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	126	16	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGCCGCTTCCTGTCCGG	NA	False	NA	NA	False	NA	NA	NA	59919689	59970910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59920671_59929828_59930161_59932578_59932694_59933533_59933627_59933708_59933761_59936275_59936452_59936997_59937076_59937225_59937340_59937661_59937755_59939592_59939693_59942259_59942325_59944638_59944737_59945485_59945571_59946811_59946963_59947454_59948531_59949829_59950009_59953034_59953190_59955859_59955980_59957191_59957322_59958386_59958455_59959328_59959381_59962679_59962775_59963366_59963541_59964087_59964202_59964471_59964659_59969376_59969938_59970789
94708	chr17	+	4822	21	NNC	ENSMUSG00000038141.12	novel	1517	9	NA	NA	598	9124	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	338.087695724053	12	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGCCAGGCC	NA	False	NA	NA	False	NA	NA	NA	6321342	6367713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6321567_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271_6361221_6361568_6361646_6361983_6362107_6365190_6365232_6367643
94709	chr5	-	3818	3	ISM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	961	-3031	961	-85	3prime_fragment	FALSE	canonical	3	421	junction_2	25	200	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAAAGTTCATTGGAAAT	NA	False	NA	-28	True	NA	NA	NA	3696845	3690045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_3693742_3694880_3694941_3696783
94710	chr5	-	7861	31	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	-14	-7	intron_retention	FALSE	canonical	2	120	junction_15	37.0834044943137	369	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGGAGAACTCTGGTGA	9596	False	NA	NA	False	NA	NA	NA	135518126	135435395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
94711	chr7	+	4768	33	NNC	ENSMUSG00000011658.17	novel	1164	12	NA	NA	0	26808	intron_retention	FALSE	non_canonical	0	0	junction_11	50.8385542059371	228	19	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCGGGGGAGGGCGGGCT	NA	False	NA	NA	False	NA	NA	NA	44545519	44578863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44547926_44548125_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556_44550242_44550411_44550546_44550660_44550731_44550809_44550921_44551010_44551139_44552172_44552272_44552401_44552479_44552565_44552625_44553164_44553326_44553412_44553583_44553663_44553895_44554078_44554177_44555110_44555289_44555488_44555633_44555734_44555902_44556254_44556409_44557147_44557257_44558643_44558745_44559121_44559255_44565264_44565461_44565587_44565728_44565820_44565897_44578705
94712	chr7	+	5268	17	NIC	ENSMUSG00000030852.19	novel	9029	22	NA	NA	-20428	-2	intron_retention	FALSE	canonical	1	1	junction_2	103.326469866148	6	117	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCGAGTGTGGCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	130226782	130366512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_130228572_130229127_130229230_130276331_130276470_130318432_130318570_130330252_130331559_130335235_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
94713	chr1	-	2591	18	NNC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-8	-708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	134.101030962444	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTACATTGACATTTTC	NA	False	NA	NA	False	NA	NA	NA	58544122	58502637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520234_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
94714	chr7	+	2994	17	NNC	ENSMUSG00000070699.6	novel	1868	16	NA	NA	-2350	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	76.300981931755	41	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTTCTGGATCCATGAG	1600	False	NA	NA	False	NA	NA	NA	28439066	28453278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28439664_28440910_28440982_28441231_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
94715	chr1	-	430	1	NIC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	10313	134	mono-exon	FALSE	NA	NA	NA	NA	NA	1	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATATAAAAAGAAAGGATCT	NA	False	NA	NA	False	NA	NA	NA	167054091	167053661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_167053700_167054100
94716	chr9	+	1675	9	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	intron_retention	FALSE	canonical	3	17440	junction_1	1299.57868172727	99711	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64080716_64082105_64082278_64082475_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
94717	chr7	-	2399	6	NIC	ENSMUSG00000030888.15	novel	3053	7	NA	NA	-134	192	intron_retention	FALSE	canonical	3	267	junction_2	16.9870538940689	494	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTATGTGTGTCGTTGATC	9853	False	NA	NA	False	NA	NA	NA	105385714	105381418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_105382351_105382558_105382656_105382738_105382846_105382974_105383661_105383896_105384264_105385504
94718	chr1	+	3537	23	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	14	-253	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	600.406432591724	1	83	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATAGATTTTCTTTTTTAT	3161	False	NA	NA	False	NA	NA	NA	180396507	180428564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401216_180401383_180405147_180405264_180406781_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426521_180426646_180427157_180427220_180427660_180427776_180428014
94719	chr7	+	2019	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	30	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	493	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGTGAAACCAGACTTGC	400	False	NA	NA	False	NA	NA	NA	44465836	44480221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44479664_44480026
94720	chr1	-	3999	21	Antisense	novelGene_ENSMUSG00000026288.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	894	40	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATGAAAATGAGAACAAG	2437	False	NA	NA	False	NA	NA	NA	87648225	87609206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_87609290_87609406_87609479_87611462_87611588_87619346_87619449_87623049_87623157_87625069_87625266_87625831_87625952_87626748_87626845_87627359_87627500_87628880_87628990_87629135_87629225_87630838_87630921_87633654_87633745_87635816_87635931_87637337_87637421_87638784_87638874_87639751_87639902_87640913_87641010_87642757_87643034_87645409_87646005_87647040
94721	chr3	-	3339	27	NIC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	85	junction_1	264.732096354478	499	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGATCTCTCACCTTAAT	3547	False	NA	NA	False	NA	NA	NA	89959782	89907450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89907561_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
94722	chr19	-	3147	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTTTCTCGTTGGTGATT	NA	False	NA	NA	False	NA	NA	NA	22705271	22699833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773_22702990_22705066
94723	chr8	+	501	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	-21	111	-21	-111	mono-exon	FALSE	NA	NA	NA	NA	NA	50	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCGCAGGTCTAAGACCAA	7096	False	NA	NA	False	NA	NA	NA	19542930	19543431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_19542900_19543400
94724	chr4	+	4597	11	NNC	ENSMUSG00000085714.2	novel	507	2	NA	NA	-192	10721	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	100	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCTCGCGTCGCGTCCTCG	2531	False	NA	NA	False	NA	NA	NA	135730684	135748969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135732991_135733482_135733660_135734421_135734534_135735089_135735270_135736354_135736455_135736556_135736715_135737063_135737174_135737537_135738720_135740180_135740296_135741718_135741768_135748861
94725	chr7	-	4531	6	NNC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	-22	-311	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	304.007236755969	18	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATACAACAGTAACCCTG	NA	False	NA	NA	False	NA	NA	NA	118454876	118441770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118442787_118442883_118445318_118447754_118447798_118449843_118449913_118451625_118452564_118454845
94726	chr6	+	4887	8	NNC	ENSMUSG00000013736.17	novel	2283	9	NA	NA	17	-14	intron_retention	FALSE	non_canonical	0	0	junction_1	325.184782634647	32	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAAATATTTCATTCTTT	NA	False	NA	NA	False	NA	NA	NA	106746147	106759421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_106746660_106746772_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146
94727	chr11	+	4221	7	ISM	ENSMUSG00000039275.10	ENSMUST00000106113.2	5029	9	28008	13	-2746	-13	3prime_fragment	FALSE	canonical	3	175	junction_6	37.7377647574534	184	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATTAATTTTAATGAATAC	NA	False	NA	NA	False	NA	NA	NA	121178823	121200709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_121178905_121181569_121181717_121186854_121187049_121187739_121187916_121189384_121189682_121190409_121190620_121197593
94728	chr4	+	3673	7	NNC	ENSMUSG00000033985.18	novel	2430	9	NA	NA	30808	1594	intron_retention	TRUE	non_canonical	0	0	junction_1	0	418	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGACTTCCGCTTCGTCTC	8246	False	NA	NA	False	NA	NA	NA	116659767	116664747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_116662259_116662332_116662492_116662682_116663343_116663456_116663551_116663680_116663723_116663812_116663954_116664661
94730	chr6	-	3164	18	NNC	ENSMUSG00000029676.16	novel	3151	18	NA	NA	3253	-25	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_16	45.3606844690612	11	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTTGATGAATTTTCT	3309	False	NA	NA	False	NA	NA	NA	25805941	25743760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25801351_25801441_25805873
94731	chr14	-	4389	2	FSM	ENSMUSG00000022124.16	ENSMUST00000127113.2	922	2	-116	-3351	-116	485	multi-exon	FALSE	canonical	3	200	junction_1	0	127	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATTAAACACTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	103327369	103317189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_103320947_103326737
94733	chr7	+	4542	32	NNC	ENSMUSG00000011658.17	novel	1164	12	NA	NA	0	26806	intron_retention	TRUE	non_canonical	0	0	junction_10	49.5539311414471	193	35	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGCCGGGGGAGGGCGGG	NA	False	NA	NA	False	NA	NA	NA	44545516	44578861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556_44550242_44550411_44550546_44550660_44550738_44550809_44550921_44551010_44551139_44552172_44552272_44552401_44552479_44552565_44552625_44553164_44553327_44553449_44553583_44553663_44553895_44554078_44554177_44555110_44555289_44555488_44555633_44555734_44555902_44556254_44556409_44557147_44557257_44558643_44558745_44559121_44559255_44565264_44565461_44565587_44565728_44565820_44565897_44578705
94734	chr9	+	2926	9	NNC	ENSMUSG00000034563.17	novel	2969	9	NA	NA	34	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	60.4285476823662	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGAGACTGCTTTCTGAT	NA	False	NA	NA	False	NA	NA	NA	72892819	72921217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920802_72920851
94735	chr4	-	1948	2	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	17176	0	15421	0	3prime_fragment	FALSE	canonical	3	1578	junction_1	0	10	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141308359	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141305255_141308293
94736	chr16	-	1883	1	Intergenic	novelGene_3661	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAACTTAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	48307120	48305237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_48305200_48307100
94737	chr4	+	3055	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33230	-2062	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	284.741061707338	764	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATATTTAATTCAAATGA	NA	False	NA	NA	False	NA	NA	NA	146500249	146552687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500584_146502756_146502850_146508052_146508139_146533486_146533585_146547952_146548020_146548860_146548988_146550437
94738	chr11	-	1311	8	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTACAGTGGCCTCTCCG	NA	False	NA	NA	False	NA	NA	NA	48696858	48690919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691398_48692487_48692662_48693099_48693246_48694228_48694325_48694682_48694794_48694980_48695123_48696370_48696481_48696804
94739	chrM	+	1931	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	442	-791	442	791	mono-exon	FALSE	NA	NA	NA	NA	NA	592	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATCTTCCTAGGACCCC	-1	True	NA	19	True	NA	NA	NA	1535	3466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3500
94740	chr16	-	1922	2	FSM	ENSMUSG00000025613.14	ENSMUST00000176241.2	688	2	-497	-737	-355	69	multi-exon	FALSE	canonical	3	5115	junction_1	0	1	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTAATGCTGCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	87283740	87281729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_87282633_87282721
94742	chr1	-	3049	20	Antisense	novelGene_ENSMUSG00000102970.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33042	54	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCCGCGCGCTGTCAGGC	9443	False	NA	NA	False	NA	NA	NA	191353674	191307876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_191308062_191314508_191314640_191315289_191315441_191318637_191318689_191323920_191324020_191326539_191326584_191328280_191328483_191328996_191329149_191336881_191337053_191338230_191338331_191339932_191340171_191342474_191342613_191343968_191344176_191345125_191345320_191345748_191345855_191346690_191346758_191347810_191347939_191349921_191350021_191351705_191351892_191353274
94743	chr7	-	3334	24	FSM	ENSMUSG00000054662.9	ENSMUST00000067836.9	3019	24	-37	-278	-37	278	multi-exon	FALSE	canonical	3	82	junction_10	30.0592986723404	682	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTCTTTGTCTAAGCG	NA	False	NA	NA	False	NA	NA	NA	140697756	140680846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
94744	chr3	+	1962	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	263	5	88	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89987109	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
94746	chr2	+	6391	6	NIC	ENSMUSG00000042548.15	novel	6981	12	NA	NA	6	-6	intron_retention	FALSE	canonical	3	143	junction_5	20.4352636391117	226	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCACTTGTCTCCTTGTC	2229	False	NA	NA	False	NA	NA	NA	153234785	153245921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_153235422_153235543_153235708_153235801_153235899_153238651_153238758_153239295_153239921_153241158
94747	chr4	+	3145	3	ISM	ENSMUSG00000045071.15	ENSMUST00000070150.11	10856	4	64225	7138	-753	1262	3prime_fragment	FALSE	canonical	3	63	junction_1	1.5	78	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAAGTCTTTAAATTAGT	NA	False	NA	NA	False	NA	NA	NA	59690435	59754301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_59691339_59737561_59737735_59752232
94748	chr4	+	2708	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	280	2	NA	NA	-6731	-1901	multi-exon	FALSE	non_canonical	0	0	junction_2	58.7631010142958	7	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146200169	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146200273_146209452_146209546_146312913_146312972_146388486_146388614_146390758_146390904_146391317_146392575_146392742_146393416_146552596
94749	chr15	+	1267	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	-191	-74	191	mono-exon	FALSE	NA	NA	NA	NA	NA	4	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGACCATAG	88	False	NA	NA	False	NA	NA	NA	12574900	12576167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12576200
94750	chr16	-	500	1	Intergenic	novelGene_3825	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
94751	chr14	+	6721	21	NNC	ENSMUSG00000054051.8	novel	8423	21	NA	NA	-7	-1713	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	29.9439476355406	94	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTCCAAATGCCAGCTTC	NA	False	NA	NA	False	NA	NA	NA	32235470	32301234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32235557_32238899_32239336_32240899_32241021_32242904_32243017_32248105_32248836_32263182_32263312_32268701_32268861_32274531_32274668_32279795_32279967_32280384_32280562_32282665_32282783_32284512_32284609_32288199_32288416_32288740_32288852_32289464_32289585_32289943_32290039_32291469_32291616_32291695_32292389_32296762_32296968_32297710_32297784_32298642
94752	chr4	+	3960	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-67	-7	multi-exon	TRUE	non_canonical	0	0	junction_5	265.767868637275	8	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGGTTGACTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	147056365	147145244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147107818_147107913_147136962_147137048_147140055_147140183_147141715_147143611_147143694
94753	chr15	-	6140	1	ISM	ENSMUSG00000022565.16	ENSMUST00000054449.14	15018	33	22719	3	10927	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	205	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACCTGGGTCTTGCCTTGT	9615	False	NA	NA	False	NA	NA	NA	76061316	76055176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_76055200_76061300
94754	chr17	-	3942	10	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	10.9994388184574	8	60	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTTCAAAGTGAACTGT	NA	False	NA	NA	False	NA	NA	NA	56630460	56618665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56619421_56619803_56619967_56620042_56620251_56622190_56622314_56622396_56622881_56624002_56624113_56624991_56625383_56627160_56627281_56627394_56627542_56629019
94755	chr10	-	4929	21	Genic_Genomic	ENSMUSG00000087429.2	novel	342	3	NA	NA	-1390	64768	multi-exon	FALSE	non_canonical	0	0	junction_1	0	165	47	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGGATAGGCAGGTATAG	NA	False	NA	NA	False	NA	NA	NA	88283186	88215329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_88215396_88236511_88236599_88247776_88247897_88248466_88248507_88250252_88250460_88254985_88255052_88255286_88255420_88264347_88264513_88265318_88265500_88265733_88265871_88267192_88267316_88268299_88268505_88268908_88269951_88271863_88272070_88272217_88272247_88273294_88273410_88274988_88275074_88275310_88275409_88276082_88276252_88279168_88279258_88281620
94756	chr11	-	1187	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-112	-73	112	mono-exon	FALSE	NA	NA	NA	NA	NA	13	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGGAGGGGCCTAGGGA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284900_20286100
94757	chr9	+	4531	4	ISM	ENSMUSG00000032012.10	ENSMUST00000034510.9	5653	6	47892	33	-2245	-33	3prime_fragment	FALSE	canonical	3	13	junction_3	3.39934634239519	160	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTACTTTTTTATAAATAAA	NA	False	NA	NA	False	NA	NA	NA	43703172	43718725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_43703477_43703744_43703863_43705386_43705539_43714768
94758	chr5	+	5025	28	Antisense	novelGene_ENSMUSG00000055204.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGCTGCTGGTGCCGCC	NA	False	NA	NA	False	NA	NA	NA	90391553	90513574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_90392353_90398232_90398379_90400721_90400882_90401353_90401804_90402500_90402671_90406292_90406409_90407942_90408039_90411116_90411280_90411848_90412030_90412490_90412700_90413289_90413431_90416188_90416335_90416494_90416611_90426103_90426253_90432901_90433002_90433345_90433490_90433693_90433822_90435106_90435199_90436445_90436555_90437098_90437288_90438805_90439044_90441059_90441155_90443442_90443680_90445847_90445990_90446394_90446547_90447847_90448007_90451772_90451927_90513530
94759	chr8	-	1425	10	NNC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	-19	-12	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_9	188.654364210856	2	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGCAAGCTGAGTACAGT	575	False	NA	NA	False	NA	NA	NA	71725141	71703780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_71704189_71705714_71705819_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71724927
94760	chr2	+	4505	6	NNC	ENSMUSG00000074521.10	novel	1451	3	NA	NA	50	133681	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	21.5777663348179	105	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTTTCTTGGTGATGATG	NA	False	NA	NA	False	NA	NA	NA	177538938	177681258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177539047_177546077_177546205_177546411_177546473_177547625_177547883_177548050_177551646_177680901
94761	chrM	-	2033	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGTTAGGCTTTTCACCT	77	True	NA	NA	False	NA	NA	NA	3466	1433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1400_3500
94762	chr6	-	224	2	ISM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	19	14258	19	-4153	5prime_fragment	FALSE	canonical	3	8494	junction_1	0	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAGGGGGCCAGATGCAT	-21	True	NA	NA	False	NA	NA	NA	7693235	7689426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_7689524_7693108
94763	chr16	+	1970	10	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1	-1	intron_retention	FALSE	canonical	3	1278	junction_9	323.956139387593	3	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
94764	chrX	+	7249	15	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	-11770	0	intron_retention	FALSE	non_canonical	0	0	junction_1	536.773543251429	805	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATCTTTATGACTTTGG	NA	False	NA	NA	False	NA	NA	NA	74448463	74497607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74448825_74453151_74454741_74454826_74454874_74454955_74455127_74455236_74455392_74459619_74460448_74461997_74462072_74466384_74466507_74479072_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
94765	chr13	-	2958	15	NIC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	0	1	intron_retention	FALSE	canonical	3	4568	junction_3	920.400445236657	22	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	4751	False	NA	NA	False	NA	NA	NA	58550330	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
94766	chr4	+	1638	9	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	248	749	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	189.08397605297	1	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTGAGGAGCTTACT	5296	False	NA	NA	False	NA	NA	NA	89055606	89098460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090508_89090560_89090622_89095039_89095163_89097704
94767	chrUn_JH584304v1	-	6493	3	Intergenic	novelGene_4612	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	671	junction_2	114.5	45	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCCAACAATCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	59688	52195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_58836_59591
94768	chr17	+	3304	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	592.430784459248	3	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	440	False	NA	NA	False	NA	NA	NA	56610340	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616428_56617785_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
94769	chrM	-	1578	1	Antisense	novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000065947.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGGTAATTATGAACATCA	24	True	NA	NA	False	NA	NA	NA	11454	9876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_9900_11500
94770	chr11	-	4783	26	NNC	ENSMUSG00000005198.16	novel	6740	29	NA	NA	-5481	-537	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	87.9431634636826	2	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCACCCAGTTATTCCCC	NA	False	NA	NA	False	NA	NA	NA	69638878	69625772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631231_69632716_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806
94771	chr13	+	3013	5	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	51	50	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	74.6537842309417	22	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTCAGTATAGTCATTT	NA	False	NA	NA	False	NA	NA	NA	97619259	97633565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97625686_97625857_97629663_97629744_97630912
94774	chr10	-	5928	3	NNC	ENSMUSG00000048756.12	novel	6848	4	NA	NA	2143	-5	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	63	214	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCATGCCCAGGAGTCTG	NA	False	NA	NA	False	NA	NA	NA	42150549	42057841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_42062292_42072461_42073898_42150507
94775	chr11	-	3315	4	NIC	ENSMUSG00000025384.16	novel	3193	10	NA	NA	0	-869	intron_retention	FALSE	canonical	3	28	junction_3	18.0800688297608	8	66	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGTCACTCAGGTTGGTG	NA	False	NA	NA	False	NA	NA	NA	120269561	120264720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120265478_120266242_120268488_120269153_120269273_120269367
94776	chr3	+	4409	23	NNC	ENSMUSG00000028059.17	novel	4492	23	NA	NA	86	1	intron_retention	FALSE	non_canonical	0	0	junction_18	107.8559645588	50	106	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGCTGGAAATGAAGCGC	9480	False	NA	NA	False	NA	NA	NA	88523535	88555356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539647_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550649_88550688_88550868_88550924_88551096_88551541_88553483_88553668_88554096
94777	chr2	-	6092	24	Antisense	novelGene_ENSMUSG00000027678.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	277	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGCGGCGCGGGGGCCGCC	NA	False	NA	NA	False	NA	NA	NA	165913838	165834553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_165834678_165876803_165876881_165889372_165889480_165889701_165889874_165890372_165890473_165891154_165891241_165891989_165892159_165893229_165893416_165893531_165893626_165894273_165894414_165894671_165894820_165896199_165896573_165896684_165897558_165899006_165899137_165900559_165900756_165901280_165901401_165901618_165901739_165902673_165902847_165907675_165907969_165909478_165909563_165910245_165910468_165911123_165911297_165911727_165911871_165912049
94778	chr10	+	3137	13	NNC	ENSMUSG00000037608.17	novel	5437	13	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	265.885940458185	17	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	2793	False	NA	NA	False	NA	NA	NA	20188217	20216010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199631_20200978_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
94779	chr3	+	2742	8	NIC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	-19	-12	intron_retention	FALSE	canonical	3	406	junction_7	26.7123757911602	61	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAGACTTGAGAAAGGGT	4462	False	NA	NA	False	NA	NA	NA	95222538	95230898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95222657_95227372_95228071_95228252_95228372_95228500_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
94780	chr11	-	597	4	NIC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-1	3	intron_retention	FALSE	canonical	3	11120	junction_3	1506.01999396496	34	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGGTCTTCTTGACACC	NA	False	NA	NA	False	NA	NA	NA	97673209	97668860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_97669205_97672159_97672289_97672631_97672716_97673169
94781	chr2	-	4928	14	Fusion	ENSMUSG00000086328.2_ENSMUSG00000027210.21	novel	3697	13	NA	NA	314	1799	multi-exon	FALSE	canonical	0	0	junction_3	20.9298631528645	156	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAAACAAGAGTAATATAA	NA	False	NA	NA	False	NA	NA	NA	115897611	115691745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115896711_115897100_115897529
94782	chr7	-	7827	3	Fusion	ENSMUSG00000044139.13_ENSMUSG00000049728.15	novel	5768	3	NA	NA	4971	-2413	intron_retention	FALSE	non_canonical	0	0	junction_1	0	171	8	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTTCCGCCGTCTGCCCGG	NA	False	NA	NA	False	NA	NA	NA	127485168	127475354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_127477275_127477737_127483086_127484609
94783	chr17	+	1084	2	Intergenic	novelGene_84	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1425	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095194	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
94784	chr14	+	1791	1	Genic_Genomic	ENSMUSG00000021911.17	novel	NA	NA	NA	NA	20071	18	mono-exon	FALSE	NA	NA	NA	NA	NA	4	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCCTTTGCCAGCACTG	NA	False	NA	NA	False	NA	NA	NA	32017734	32019525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_32017700_32019500
94785	chr15	+	4992	6	FSM	ENSMUSG00000022412.15	ENSMUST00000228788.3	4394	6	-19	-579	2	-6	multi-exon	FALSE	canonical	3	57	junction_4	71.0785480999718	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAACTCTGACGTGTCTA	2817	False	NA	NA	False	NA	NA	NA	80118282	80137566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132527_80132705_80133529
94786	chr17	+	2612	17	NIC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	-2	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	63.8266389820896	106	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTCTATGTTGCCTTTCA	NA	False	NA	NA	False	NA	NA	NA	15262507	15284491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_15262679_15263266_15263520_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
94787	chr4	-	5027	5	NNC	ENSMUSG00000057637.14	novel	7304	10	NA	NA	49287	-1672	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	16.0078105935821	86	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGAGTTCCTTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	142872018	142835632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_142835956_142838203_142838348_142858279_142862670_142868693_142868805_142871959
94788	chr11	+	1197	11	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAAGGAAAGGACGCGGGC	NA	False	NA	NA	False	NA	NA	NA	33102588	33113069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33104060_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33109996_33110332_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
94789	chr11	+	990	7	ISM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	781	0	-420	5prime_fragment	FALSE	canonical	1	1907	junction_2	1776.69449634239	75	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTAAGTATATTTGACAAT	NA	False	NA	NA	False	NA	NA	NA	48691186	48696480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371
94790	chr3	+	2700	15	FSM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	-16	11	-16	0	multi-exon	FALSE	canonical	3	19	junction_2	45.7727304969111	1	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3305	False	NA	NA	False	NA	NA	NA	96604416	96613278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96604512_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
94791	chrM	+	1081	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	61	2	61	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	21	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCTTGATAGTATAAACA	59	False	NA	-62	True	NA	NA	NA	14205	15286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
94792	chr4	+	3079	17	Antisense	novelGene_ENSMUSG00000028430.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATGGGTCCACAAACACA	NA	False	NA	NA	False	NA	NA	NA	41114462	41120584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41115506_41115680_41115783_41115882_41116079_41116375_41116466_41116591_41116723_41117397_41117493_41117659_41117813_41118089_41118256_41118419_41118576_41118651_41118769_41118884_41119024_41119236_41119313_41119412_41119561_41119752_41119879_41120008_41120185_41120273_41120385_41120530
94793	chr14	+	3665	22	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	12	-4	intron_retention	FALSE	canonical	1	1	junction_17	120.698082879905	4	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCCTGCTGGCCTCCTTT	NA	False	NA	NA	False	NA	NA	NA	32043987	32070104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068811_32069462
94794	chr14	+	940	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-94	-161	6	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	11	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	46321490	46322430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
94795	chr9	+	6349	6	NNC	ENSMUSG00000031939.17	novel	2818	9	NA	NA	0	-1	intron_retention	TRUE	canonical	0	0	junction_5	212.659728204472	1186	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTTTATAGTTTGTAT	9118	False	NA	NA	False	NA	NA	NA	15217555	15228271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221706_15222822_15227289_15227448
94796	chr8	+	5583	15	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	2763	14132	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8	114	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGCCACAGAAGCCGGCCG	NA	False	NA	NA	False	NA	NA	NA	73214496	73228977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73215202_73215279_73215465_73215591_73215688_73215823_73215949_73216022_73216165_73216247_73216335_73216644_73216781_73216915_73218363_73220226_73221890_73222046_73222137_73222221_73222333_73223710_73224071_73224713_73224900_73228455_73228630_73228901
94797	chr1	-	5951	23	NIC	ENSMUSG00000042772.16	novel	3928	23	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	60	junction_6	78.6312137041966	58	74	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCGGTGTGTAGAGGATTT	NA	False	NA	NA	False	NA	NA	NA	152778407	152712745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_152715137_152715785_152715932_152716052_152716224_152716775_152716936_152717263_152717345_152718980_152719131_152719786_152720159_152720963_152721347_152721869_152722015_152724346_152724768_152725625_152725746_152728348_152728410_152730060_152730132_152731599_152731754_152732199_152732363_152734629_152734766_152735102_152735254_152736200_152736273_152737431_152737604_152742331_152742465_152744002_152744121_152746510_152746543_152778259
94798	chr6	-	544	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	-27	0	-27	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	68	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	115785735	115782465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
94799	chr15	-	2710	1	Intergenic	novelGene_3254	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAGGAGACAAAAGAAAGAG	9795	False	NA	NA	False	NA	NA	NA	22705095	22702385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22702400_22705100
94800	chr13	+	3027	5	Fusion	ENSMUSG00000113626.2_ENSMUSG00000113836.2	novel	419	3	NA	NA	29	2362	multi-exon	FALSE	non_canonical	0	0	junction_3	89.8902108129689	24	61	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCGTTTAATTTTATTT	NA	False	NA	NA	False	NA	NA	NA	61952108	62201162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_61952220_62194994_62195122_62195306_62195333_62196894_62199299_62200803
94801	chr13	-	4568	6	FSM	ENSMUSG00000021196.15	ENSMUST00000131648.8	2680	6	-3318	1430	-3318	-16	multi-exon	FALSE	canonical	3	1227	junction_2	102.634107391257	86	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAAACATTTGGTTACAA	6465	False	NA	NA	False	NA	NA	NA	6642320	6631233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524
94802	chr10	+	1936	13	ISM	ENSMUSG00000040054.18	ENSMUST00000045621.9	8369	30	23319	6054	19722	3909	internal_fragment	FALSE	canonical	3	332	junction_1	39.3845006174877	11	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCACCCAGAACCCCAGC	NA	False	NA	NA	False	NA	NA	NA	127951970	127959118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138_127955370_127955492_127955748_127956979_127957195_127957459_127957535_127957668_127957850_127957936_127957997_127958174_127958320_127958892
94803	chr11	-	2749	15	NIC	ENSMUSG00000040667.12	novel	2450	17	NA	NA	0	-7	intron_retention	FALSE	canonical	3	678	junction_9	74.1306073007331	1183	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTCAAAAATTTGACTT	NA	False	NA	NA	False	NA	NA	NA	70860785	70833914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835565_70835670_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
94804	chr10	+	997	4	Antisense	novelGene_ENSMUSG00000118400.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCGAAAAGCCCCAGTT	6862	False	NA	NA	False	NA	NA	NA	128383982	128512595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128384301_128384786_128384843_128384956_128384967_128511982
94805	chr16	+	2457	11	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	380	junction_10	507.125586023817	8	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22931212_22931916
94806	chr12	-	5912	6	ISM	ENSMUSG00000020961.16	ENSMUST00000052969.15	9896	7	42662	3570	81	-3570	3prime_fragment	FALSE	canonical	1	3	junction_3	11.6516093309036	58	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCCAGTGTCCCCGAAA	NA	False	NA	NA	False	NA	NA	NA	91710548	91603352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_91606580_91608494_91608698_91614005_91615845_91680700_91680899_91707244_91707521_91710379
94807	chrM	+	1968	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1008	-3	-1008	3	mono-exon	FALSE	NA	NA	NA	NA	NA	498	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	128	False	NA	36	True	NA	NA	NA	1742	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1700_3700
94809	chrM	+	1048	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	95	1	95	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	11	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	93	False	NA	-28	True	NA	NA	NA	14239	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
94810	chr10	+	4158	2	Genic_Genomic	ENSMUSG00000112523.2	novel	871	1	NA	NA	8	4313	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	75	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGCTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	106018889	106024065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_106021468_106022485
94811	chrX	-	3011	20	NNC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	349.094975528234	2	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGCCTAAAAGTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	37665073	37622157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631025_37635581_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
94813	chr15	+	1839	8	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	7	-5	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	278.410209758836	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAGATTAAGTTGTGCAT	7509	False	NA	NA	False	NA	NA	NA	79775866	79792114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
94814	chr2	-	3117	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	41	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	187.767878087991	1	26	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGTGACCTAGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	127673683	127643044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669277_127671412_127671497_127671597_127671658_127673639
94815	chr4	+	2743	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	19	234	1	-234	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	6	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	913	False	NA	NA	False	NA	NA	NA	145237347	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
94816	chr12	+	2364	11	FSM	ENSMUSG00000097451.12	ENSMUST00000181253.10	2368	11	0	4	0	-4	multi-exon	FALSE	canonical	3	396	junction_3	76.4947056991528	1061	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTAAAAAAAGTGTGAAGT	2865	False	NA	NA	False	NA	NA	NA	109612563	109628139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
94817	chr7	+	585	4	NNC	ENSMUSG00000063229.16	novel	1277	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3505.16384147097	47	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46504808
94818	chr16	+	564	1	Intergenic	novelGene_3763	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	255	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
94819	chr2	-	3756	6	NNC	ENSMUSG00000074527.12	novel	2314	6	NA	NA	2	-121	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	35.6224648220754	3	53	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTCTTGGTCATGTTG	NA	False	NA	NA	False	NA	NA	NA	176619585	176605963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176609305_176610459_176610521_176610725_176610853_176614588_176614691_176615991_176616047_176619515
94820	chr7	-	1273	3	NIC	ENSMUSG00000050708.17	novel	943	4	NA	NA	70	-2	intron_retention	FALSE	canonical	3	56898	junction_1	8751.5	1	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTGGTGTTTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	45109193	45107370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45107708_45107958_45108655_45108953
94821	chr4	-	5372	9	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-2	-5	intron_retention	FALSE	canonical	0	0	junction_1	297.431399653769	6	135	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTAAACGGACTGTGTT	6820	False	NA	NA	False	NA	NA	NA	126096407	126057883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126059350_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126074608_126080227_126080382_126096362
94822	chr13	+	929	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	21	-12	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	21	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
94823	chr7	-	3974	14	NNC	ENSMUSG00000030986.14	novel	2998	12	NA	NA	124	3874	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	169.347162770628	2	12	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCACACTGAGAACAGAGCA	NA	False	NA	NA	False	NA	NA	NA	133361874	133318796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_133319516_133320832_133321006_133322433_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339131_133344157_133344531_133350571_133350766_133361128_133361643_133361749
94825	chr9	-	1737	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	4	53	-4	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	215818	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
94826	chr19	-	5026	13	Antisense	novelGene_ENSMUSG00000024759.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGCTGAACTACAACTCCC	NA	False	NA	NA	False	NA	NA	NA	7514700	7471583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_7471725_7486710_7486923_7487341_7487489_7494239_7494346_7495908_7495960_7498149_7498207_7498469_7498568_7499433_7499571_7506304_7506425_7506962_7507028_7507882_7507955_7509378_7509809_7511310
94827	chr17	+	2366	7	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-58928	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	98.0487407137672	1	101	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCTTCTAAGGGATGCA	NA	False	NA	NA	False	NA	NA	NA	17225446	17309881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17225539_17281029_17281160_17305782_17305910_17306151_17306213_17307505_17308915_17309250_17309519_17309602
94830	chr9	+	4781	18	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.201491115441	1	110	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTTGTATTGAAATGGC	NA	False	NA	NA	False	NA	NA	NA	109760911	109912238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761003_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
94831	chr1	+	731	2	Antisense	novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	NA	False	NA	NA	False	NA	NA	NA	24653054	24653893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24653066_24653173
94832	chr8	+	8599	6	Fusion	ENSMUSG00000110649.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-21081	-2338	intron_retention	TRUE	non_canonical	0	0	junction_2	441.111051777214	350	97	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAACATCCATGGCTCCA	5308	False	NA	NA	False	NA	NA	NA	20555618	20724928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20555835_20576529_20576922_20712263_20717497_20721120_20721241_20722101_20722370_20722558
94833	chr17	+	703	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	289	857	289	-857	mono-exon	FALSE	NA	NA	NA	NA	NA	127	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGAGCGAAAGCATTTG	NA	False	NA	57	True	NA	NA	NA	40157532	40158235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157500_40158200
94834	chr1	-	1558	9	FSM	ENSMUSG00000026000.17	ENSMUST00000113979.10	4461	9	38	2865	0	-7	multi-exon	FALSE	canonical	3	327	junction_5	113.959902487673	2	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAAGTGGTCGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	67077993	67042540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653
94835	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
94836	chr8	-	2778	14	NNC	ENSMUSG00000031575.19	novel	2337	16	NA	NA	37	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	938.774008509638	25	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	26337685	26306043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313265_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
94837	chr5	-	6108	10	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	43	146	combination_of_known_splicesites	FALSE	canonical	3	86	junction_9	19.7821468332771	90	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGTGCCCAAACCACTC	7114	False	NA	NA	False	NA	NA	NA	33011539	32950836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33011436
94838	chr13	-	4052	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18644	73541	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	34.5392530318766	7	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCCCTAACCCTAACCAC	NA	False	NA	NA	False	NA	NA	NA	74739509	74653935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74654107_74723575_74725525_74725953_74727579_74728971_74729033_74729232_74729360_74739390
94839	chr16	-	3244	17	NNC	ENSMUSG00000022673.6	novel	3589	16	NA	NA	75	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	379.752833885081	196	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGGTTTAAAATTATTT	NA	False	NA	NA	False	NA	NA	NA	15455189	15441966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447245_15447308_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
94840	chr5	-	4218	28	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	263.341917868096	2	88	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATACAGTTAGTCTTTA	8108	False	NA	NA	False	NA	NA	NA	100564093	100509512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100517454_100517494_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533157_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
94841	chrX	+	3449	13	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	-47	1246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	850.352867931896	4	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATAACTAGTGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	161543350	161563334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161543515_161543602_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
94842	chr14	+	1862	13	ISM	ENSMUSG00000021957.8	ENSMUST00000225857.2	1962	14	1111	16	-970	-16	3prime_fragment	FALSE	canonical	3	1855	junction_2	151.898792146467	1	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGAGAAAAAAATTAATCCT	NA	False	NA	NA	False	NA	NA	NA	30280676	30295565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
94843	chr3	+	2031	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	-4	0	3	0	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	3600	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	90383449	90395686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
94844	chr15	+	4279	29	ISM	ENSMUSG00000022272.18	ENSMUST00000110457.8	8125	41	102279	9315	10933	-9313	internal_fragment	FALSE	canonical	3	45	junction_1	321.908475077204	6	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAACAACTGGAGTCCATG	73	False	NA	NA	False	NA	NA	NA	25724889	25804444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_25725172_25725281_25725367_25726505_25726610_25732055_25732186_25734073_25734193_25736031_25736179_25736486_25736588_25736680_25736748_25737535_25737629_25738042_25738112_25739372_25739456_25742426_25742536_25744261_25744343_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384
94845	chr16	+	3489	1	Intergenic	novelGene_3666	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	100	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGGAGTCTGCGATCC	NA	False	NA	NA	False	NA	NA	NA	51610555	51614044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_51610600_51614000
94846	chrX	-	2877	8	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	30.9001023708759	31	33	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTGATGTGAAGATTGGA	NA	False	NA	NA	False	NA	NA	NA	49724138	49652003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49656416_49656571_49659014_49659169_49709551_49709682_49715313_49715387_49716083_49716187_49719767_49719873_49723821
94847	chr13	+	6841	11	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113760.2	novel	569	4	NA	NA	-21	-3411	multi-exon	TRUE	non_canonical	0	0	junction_3	50.9451666009642	178	41	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGCCCCAAACATGACAAGT	NA	False	NA	NA	False	NA	NA	NA	66180001	66264607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66180131_66186206_66186334_66186533_66186595_66206287_66206399_66249666_66249727_66250272_66250349_66250560_66250639_66250926_66250969_66253145_66255236_66260309_66260609_66260839
94848	chr12	+	3575	4	Fusion	ENSMUSG00000113959.2_ENSMUSG00000073184.5	novel	241	3	NA	NA	-74	662	multi-exon	FALSE	canonical	2	15	junction_3	6.23609564462324	62	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCAAAGTCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	19342739	19355854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_+_19342877_19350884_19351012_19351214_19351276_19352604
94849	chr8	+	2908	21	ISM	ENSMUSG00000031862.12	ENSMUST00000034326.7	3915	26	5916	21	-10	-17	3prime_fragment	FALSE	canonical	3	203	junction_5	51.4931791599625	120	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGCGTCTGCAATTTTATAA	1665	False	NA	NA	False	NA	NA	NA	70249728	70260378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
94850	chr17	+	2941	18	NNC	ENSMUSG00000001228.15	novel	3402	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	733.09880280306	20	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	NA	False	NA	NA	NA	56611347	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629717_56630142
94851	chr7	+	2304	8	FSM	ENSMUSG00000002781.20	ENSMUST00000069772.16	2297	8	-13	6	-13	-2	multi-exon	FALSE	canonical	3	12	junction_1	17.4414472344658	140	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAACTCTGGAGTAGTGT	5479	False	NA	NA	False	NA	NA	NA	45546351	45566831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
94852	chr19	+	14430	1	ISM	ENSMUSG00000069833.14	ENSMUST00000092956.4	18100	5	14251	1232	3875	-1232	mono-exon	FALSE	NA	NA	NA	NA	NA	98	84	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCAAATTCTCCCTATT	NA	False	NA	NA	False	NA	NA	NA	8980898	8995328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8980900_8995300
94853	chr13	+	9432	48	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	4	68210	intron_retention	FALSE	non_canonical	0	0	junction_26	468.169719625186	1633	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGGCCCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	6598198	6698761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685_6630159_6630209_6631628_6632437_6632544_6634638_6634739_6636517_6636628_6637086_6637150_6638524_6638690_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653500_6654991_6655117_6655670_6655765_6664739_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675249_6685959_6686037_6698608
94854	chrM	+	1591	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-269	56	-269	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	17	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCCACTTATTCTTCTAA	20	False	NA	NA	False	NA	NA	NA	9897	11488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
94855	chr14	-	2158	6	Intergenic	novelGene_507	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	1.89736659610103	38	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCCAGAACTAAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	3922767	3913831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_3914448_3914492_3915427_3916727_3916822_3917624_3917756_3921334_3921514_3922563
94856	chr7	-	2801	7	ISM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	-41	-1	-12	0	intron_retention	FALSE	canonical	3	19253	junction_4	576.144874720471	35	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTTCATGTCTTG	NA	False	NA	NA	False	NA	NA	NA	126398354	126394406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508
94857	chr2	-	1314	8	ISM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	4453	943	4453	-943	internal_fragment	FALSE	canonical	3	11792	junction_7	900.750072926753	230	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAACTTGATTCCTGGG	8238	False	NA	11	True	NA	NA	NA	154730249	154714280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102
94859	chr13	-	7431	9	Antisense	novelGene_ENSMUSG00000113661.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	23.8117617995813	63	89	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGGAAGATCCCGCCTCT	NA	False	NA	NA	False	NA	NA	NA	65673799	65651742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65651858_65658191_65658317_65658516_65658579_65659711_65660292_65660711_65661132_65661196_65666552_65669225_65669500_65669697_65669907_65673508
94860	chr2	+	8797	34	NNC	ENSMUSG00000036202.17	novel	2789	14	NA	NA	-1306	4	intron_retention	TRUE	canonical	0	0	junction_16	158.041758497031	8	43	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAGTTTATTTTCTCAAA	NA	False	NA	NA	False	NA	NA	NA	51961537	52012072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51961660_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271
94861	chr6	-	1780	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2487.76510942441	4	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1680	False	NA	NA	False	NA	NA	NA	7693141	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681301_7681964_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
94862	chrUn_JH584304v1	+	2602	9	Intergenic	novelGene_4582	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	10	junction_1	14.4086562524061	69	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCTCCCCAACTTGTTT	NA	False	NA	NA	False	NA	NA	NA	4975	33119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_5089_14083_14202_19242_19346_20219_20377_24796_24959_26983_27055_28052_28146_29421_29520_31432
94863	chr18	+	1809	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2697.75315144209	3	100	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTAGTTTGTGTGGG	NA	False	NA	NA	False	NA	NA	NA	77861690	77870208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866323_77866431_77866599_77866778_77866884_77867494_77867679_77867778_77868013_77868700_77868793_77868918_77869057_77869498_77869650_77870000
94864	chr10	+	4693	7	NIC	ENSMUSG00000019817.19	novel	3946	9	NA	NA	-4	-4	combination_of_known_junctions	FALSE	canonical	3	23	junction_6	41.2135360719698	188	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATCTTTCTGTCTTTTCA	2930	False	NA	NA	False	NA	NA	NA	12966451	13007434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_12966769_12981598_12981638_12988262_12988295_12992453_12992526_13000599_13000913_13002885_13004741_13005369
94865	chr16	-	2192	6	NNC	ENSMUSG00000033809.16	novel	1308	8	NA	NA	0	-9	intron_retention	FALSE	non_canonical	0	0	junction_2	132.876483999239	3	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGTCCACCTTTGTGCA	NA	False	NA	NA	False	NA	NA	NA	20429497	20424231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_20424468_20424611_20424755_20425273_20425353_20425509_20425716_20426513_20427837_20429292
94866	chr12	-	4002	4	NIC	ENSMUSG00000020961.16	novel	9896	7	NA	NA	27860	3537	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	9.7410927974683	88	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTTTTTTGAGGAGTT	NA	False	NA	NA	False	NA	NA	NA	91652888	91604779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_91606580_91608494_91608698_91614005_91615845_91652728
94868	chr11	-	647	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	217	-3	171	3	multi-exon	FALSE	canonical	3	9692	junction_2	172	13	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGTGTTGGTTTGCAC	NA	False	NA	NA	False	NA	NA	NA	70545253	70542672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_70543048_70543612_70543806_70545174
94869	chr4	-	4400	33	NNC	ENSMUSG00000028431.12	novel	6160	37	NA	NA	56	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	87.2645940516542	18	80	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGACTCAGTGGTAAAG	18	True	NA	NA	False	NA	NA	NA	56802275	56751009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56759800_56759915_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769216_56770980_56771079_56771435_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56778979_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
94870	chr12	-	5161	20	NNC	ENSMUSG00000020949.10	novel	1233	6	NA	NA	15	26082	intron_retention	FALSE	non_canonical	0	0	junction_1	4563.28504102592	36	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGATCACACTGCGCACGCG	NA	False	NA	NA	False	NA	NA	NA	65120721	65083115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090130_65090486_65090651_65090778_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102409_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
94871	chr15	-	2684	5	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-60	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1737.34270870776	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	698	False	NA	NA	False	NA	NA	NA	36793823	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36790917_36791233_36793722
94873	chr7	+	4035	14	NNC	ENSMUSG00000030983.5	novel	1244	7	NA	NA	-311	39028	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	591.977180513338	47	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTGATCGGAATTGTGA	9042	False	NA	NA	False	NA	NA	NA	133318796	133361902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_133319516_133320832_133321008_133322435_133323128_133323879_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335855_133335936_133336035_133338914_133339163_133344156_133344529_133350569_133350764_133361126_133361643_133361749
94875	chr1	+	4412	1	FSM	ENSMUSG00000088363.3	ENSMUST00000157738.3	130	1	-1069	-3213	-1069	3213	mono-exon	FALSE	NA	NA	NA	NA	NA	11	69	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGTGGCTGGAACCTC	NA	False	NA	NA	False	NA	NA	NA	118608481	118612893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_118608500_118612900
94876	chr8	-	3778	4	FSM	ENSMUSG00000071302.11	ENSMUST00000189965.2	343	4	-3	-3432	-3	-309	multi-exon	FALSE	canonical	3	6	junction_3	25.9358182185692	111	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGCTGGTTATTTGATC	NA	False	NA	NA	False	NA	NA	NA	129960890	129943143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_129946633_129948024_129948086_129948304_129948432_129960789
94877	chrX	-	6432	15	NIC	ENSMUSG00000040363.16	novel	6941	15	NA	NA	-161	-1	combination_of_known_junctions	FALSE	canonical	2	9	junction_14	49.9731050114939	205	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATTGAAGTACTTTGCAT	NA	False	NA	NA	False	NA	NA	NA	12026755	11902979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_11904157_11905150_11905308_11905488_11905567_11906623_11906770_11907740_11907908_11913094_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_12026527
94878	chr15	+	2936	7	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-15	-5	intron_retention	FALSE	canonical	3	95	junction_1	229.243684027863	6	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAAAGAAAGAAAGACAAGAT	7487	False	NA	NA	False	NA	NA	NA	79775844	79792102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79791165_79791504
94879	chrM	+	968	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	43	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	-2	True	NA	87	True	NA	NA	NA	14144	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14769_14943
94880	chr11	-	2656	8	NIC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	7	-2	intron_retention	FALSE	canonical	3	178	junction_7	30.8954788317789	6	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGGAGCTTGGAGGAAG	4410	False	NA	NA	False	NA	NA	NA	94544783	94535823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_94536432_94536641_94536832_94538116_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
94881	chr2	-	3057	4	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-33	1737	combination_of_known_splicesites	FALSE	canonical	3	106	junction_2	247.107264158705	37	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	2304	False	NA	NA	False	NA	NA	NA	177270036	177259259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177262087_177263226_177263288_177266761_177266817_177269922
94882	chr18	+	1682	6	NIC	ENSMUSG00000042660.9	novel	1619	7	NA	NA	28	0	intron_retention	FALSE	canonical	3	317	junction_1	13.2574507353412	1149	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTGCCAAGCTGGGA	NA	False	NA	NA	False	NA	NA	NA	36893300	36896863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36896072_36896144
94884	chr5	-	5644	9	NIC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	1	161	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	40.2670771226321	83	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCACAATGCCCAGCCCA	7072	False	NA	NA	False	NA	NA	NA	33011581	32950821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33011436
94885	chr13	+	3134	4	Fusion	ENSMUSG00000063905.3_ENSMUSG00000113008.2	novel	327	2	NA	NA	-8733	-233	multi-exon	FALSE	canonical	3	7	junction_1	10.8730042868667	57	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651758	65662559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_65651859_65658192_65658320_65658519_65658581_65659713
94886	chr19	-	2024	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	914.391361578934	3	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3780	False	NA	NA	False	NA	NA	NA	7017318	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006098_7006317_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
94887	chr10	-	3910	1	FSM	ENSMUSG00000057134.7	ENSMUST00000075686.7	4558	1	647	1	647	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	156	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTAGAAATAATGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	67384251	67380341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_67380300_67384300
94888	chr15	+	4369	19	ISM	ENSMUSG00000058290.5	ENSMUST00000064924.6	6658	31	33	7757	1	-476	5prime_fragment	FALSE	canonical	3	138	junction_1	45.7748111228581	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTCCCGTACCCGGGGC	392	False	NA	NA	False	NA	NA	NA	102204733	102225035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102204851_102205194_102205285_102206618_102207675_102207853_102207959_102208237_102208350_102211046_102211184_102212386_102212581_102213360_102213601_102214099_102214245_102214332_102214472_102214669_102214810_102217632_102217768_102219034_102219155_102220849_102221022_102221370_102221500_102221617_102221775_102222421_102222532_102223622_102224612_102224953
94889	chr2	+	2647	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	4	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	658	False	NA	NA	False	NA	NA	NA	26279364	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285535_26286008
94890	chr1	-	2048	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	41	751	-10	-7	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	7	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTCTGTTTGTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	75195897	75191622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
94891	chr3	+	5071	19	Fusion	ENSMUSG00000068917.13_ENSMUSG00000028049.16	novel	2112	13	NA	NA	18	-68	intron_retention	FALSE	canonical	3	250	junction_3	299.33973122751	34	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCCTTCTGCTGTGCCAA	NA	False	NA	NA	False	NA	NA	NA	89072303	89090002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700_89085375_89086401_89086531_89086623_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
94892	chr11	-	1052	7	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	118	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCGGCCTCCGCCGGA	NA	False	NA	NA	False	NA	NA	NA	48696915	48691186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691398_48692487_48692662_48693099_48693274_48694662_48694792_48694979_48695123_48696370_48696481_48696804
94893	chr7	-	6698	7	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-46	334	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	44.8578000154067	237	26	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATATATTGAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	27713586	27683944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27689948_27704643_27704743_27704891_27705052_27706738_27706866_27707808_27707862_27711760_27711876_27713445
94894	chr13	-	6029	6	Genic_Genomic	ENSMUSG00000097483.3	novel	1094	3	NA	NA	-10851	18691	multi-exon	TRUE	non_canonical	0	0	junction_1	0	58	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTACTATTTGACCTAGAC	2008	False	NA	NA	False	NA	NA	NA	66678802	66632532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66634244_66666172_66667186_66667294_66667636_66674048_66674178_66674375_66674434_66676025
94895	chrM	+	1018	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-58	-3	-58	3	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	269	False	NA	51	True	NA	NA	NA	2692	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
94896	chr5	-	1177	1	Intergenic	novelGene_850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATAAATAAATCTTTAA	NA	False	NA	NA	False	NA	NA	NA	122341757	122340580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_122340600_122341800
94897	chr12	+	1631	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-590	251	-10	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	112	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAATAACTCCATGTTC	NA	False	NA	NA	False	NA	NA	NA	72132881	72148225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
94898	chr4	+	3070	2	Intergenic	novelGene_2166	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	16	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGCAGGCAAAACACCAAT	NA	False	NA	NA	False	NA	NA	NA	149581772	149584887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_149583283_149583327
94899	chr1	-	2823	16	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	10	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	667.682406204893	1	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTCTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	20890474	20873195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882380_20883176_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
94900	chr11	+	2365	17	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-40	-3	intron_retention	FALSE	canonical	3	862	junction_14	82.7054024459708	728	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGACCAATTGTTAATCCT	NA	False	NA	NA	False	NA	NA	NA	115455310	115474729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115469113_115469314_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
94901	chr11	+	3549	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	50	-17	intron_retention	FALSE	canonical	3	527	junction_7	34.0270480647381	43	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGAGTTGATATGGATGA	NA	False	NA	NA	False	NA	NA	NA	78219290	78233591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78232262_78232559
94902	chr5	+	871	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	1155	-22	17	5prime_fragment	FALSE	canonical	3	7201	junction_3	5858.17585942928	9	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCCTTTCAGGACCACAG	NA	False	NA	NA	False	NA	NA	NA	115697573	115700631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484
94903	chr15	-	3892	10	NIC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	-1211	-4	intron_retention	FALSE	canonical	3	5069	junction_8	514.942163838586	8	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAGATGGTTATGCTTTT	5793	False	NA	NA	False	NA	NA	NA	36603801	36595908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36596344_36596806_36596900_36597207_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36600933_36601113_36601252_36601558_36601654_36603089
94904	chr9	-	1730	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	11	53	-11	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	214786	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAAATCTGTGTTGGTCA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
94905	chr9	+	5379	29	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	0	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	892.654708479952	1	116	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTTAAAAACAAAGCTGT	NA	False	NA	NA	False	NA	NA	NA	72569719	72657118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628696_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653755_72654407
94906	chr4	+	3383	22	NIC	ENSMUSG00000066036.15	novel	15798	106	NA	NA	1280	-4	combination_of_known_junctions	FALSE	canonical	3	17	junction_16	86.8084397706784	2	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAAGGGGTCTAGCTGC	3631	False	NA	NA	False	NA	NA	NA	139191849	139216837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206724_139206887_139207952_139208148_139209768_139209994_139212595_139212687_139213295_139213459_139216477
94907	chr11	+	2397	8	NNC	ENSMUSG00000037791.16	novel	4410	15	NA	NA	-346	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	46.7956914116447	1	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCAAATTATGTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	77913860	77921354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142_77920635_77920825
94908	chr4	-	3986	28	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	-41	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	194.25984888517	27	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTCTCCGTGTTCTGG	NA	False	NA	NA	False	NA	NA	NA	41251660	41194313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41194961_41195324_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534
94909	chr17	-	5865	6	NIC	ENSMUSG00000015120.16	novel	890	7	NA	NA	2	1406	intron_retention	FALSE	canonical	3	206	junction_5	1893.37229302639	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	3822	False	NA	NA	False	NA	NA	NA	25493282	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25487588_25488165_25488250_25488376_25488454_25493135
94910	chrM	+	2609	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1027	0	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	2	68	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	-3	True	NA	22	True	NA	NA	NA	1093	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
94911	chrX	-	3576	1	Intergenic	novelGene_4044	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGTAGCCAAGACAGTT	NA	False	NA	NA	False	NA	NA	NA	122310774	122307198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_122307200_122310800
94912	chr11	+	2877	23	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	3	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	792.863890437905	1	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGCCCTTTTTCTTATG	NA	False	NA	NA	False	NA	NA	NA	23206043	23246221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206161_23206643_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228729_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234632_23236849_23236929_23237344_23237452_23239752_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
94913	chr18	-	4182	11	FSM	ENSMUSG00000024515.14	ENSMUST00000114939.2	2233	11	193	-2142	193	1150	multi-exon	FALSE	canonical	3	378	junction_1	24.1669195389069	183	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTGCCTTTATTTGCTTG	5414	False	NA	NA	False	NA	NA	NA	73811109	73770929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_73773541_73774853_73774993_73781955_73782125_73782796_73782981_73790265_73790317_73791638_73791756_73791849_73791970_73795728_73795939_73808231_73808262_73808841_73809017_73810733
94914	chr6	+	3154	18	ISM	ENSMUSG00000029833.18	ENSMUST00000120428.8	3940	19	32721	123	3045	-123	3prime_fragment	FALSE	canonical	3	354	junction_8	67.1240652702762	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGAAGCAGAGTTCTTT	9461	False	NA	NA	False	NA	NA	NA	37880466	37943108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
94915	chr4	-	1260	1	FSM	ENSMUSG00000095042.2	ENSMUST00000119266.2	1002	1	-67	-191	-67	191	mono-exon	FALSE	NA	NA	NA	NA	NA	31	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	57372021	57370761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_57370800_57372000
94916	chr11	-	831	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	95	417	95	-40	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACTCCCTGCCTCTTCTC	6366	False	NA	NA	False	NA	NA	NA	69812117	69807962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
94917	chr13	+	11796	7	Antisense	novelGene_ENSMUSG00000114282.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	263	89	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGCAGGAGAAAGGATTAT	7029	False	NA	NA	False	NA	NA	NA	99557971	99653053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_99562468_99563724_99563965_99565718_99572210_99578141_99578280_99580718_99580804_99644614_99644720_99652812
94918	chr4	+	1568	7	NNC	ENSMUSG00000028868.14	novel	5642	9	NA	NA	7	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	183.182741181222	26	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTCACCTTTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	132857857	132927058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917526_132926337
94919	chr3	+	5470	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	10	1	-4	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	350	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTTAAGTGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	41510166	41571289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
94920	chr13	-	6004	21	Antisense	novelGene_ENSMUSG00000021500.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	124	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCGGGGTGCGGAAGGAAG	9204	False	NA	NA	False	NA	NA	NA	55826926	55782815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55783008_55785837_55786026_55787601_55787746_55793181_55793280_55795438_55795605_55798226_55798378_55799854_55799969_55800723_55800890_55801412_55801536_55801816_55802941_55806829_55808610_55811028_55811196_55811590_55811753_55813997_55814192_55817522_55817663_55818016_55818167_55821753_55821931_55823708_55823925_55824579_55824728_55825333_55825407_55826595
94921	chr17	-	4437	17	Antisense	novelGene_ENSMUSG00002076233.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	70	15	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCCGAGCTGATGGAATAA	340	False	NA	NA	False	NA	NA	NA	47670355	47452757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_47452834_47541153_47541240_47597664_47597781_47624716_47626425_47627537_47627585_47628691_47628846_47630275_47630603_47634198_47634589_47635513_47635581_47637648_47637787_47637924_47638030_47639942_47640019_47648475_47648565_47651990_47652104_47659573_47659781_47664653_47664871_47669834
94922	chr11	-	1878	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	39	180	39	-180	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	34	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAAACACCCACTGAGCT	5240	False	NA	NA	False	NA	NA	NA	88846252	88815025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
94923	chr17	+	2035	11	NIC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	0	1	intron_retention	FALSE	canonical	3	3235	junction_7	188.067673989976	129	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135328	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_13135517_13136684_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
94924	chr17	-	4751	10	FSM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	-11	0	-11	0	multi-exon	FALSE	canonical	3	104	junction_6	24	141	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGTGTGACCCTATC	NA	False	NA	NA	False	NA	NA	NA	64638922	64587999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64604718_64604905_64615616_64616662_64618165_64618367_64619995_64620114_64638790
94925	chr2	+	834	4	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	24944	1021	4478	968	3prime_fragment	FALSE	canonical	3	2909	junction_2	170.282771360529	350	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGCCGCCCCGACTCTG	NA	False	NA	NA	False	NA	NA	NA	162921550	162925587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162921628_162922637_162922743_162924469_162924620_162925085
94926	chr13	+	4960	4	Antisense	novelGene_ENSMUSG00000113712.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	53.2060982302676	31	45	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCAAGATGCTCTCTCGT	NA	False	NA	NA	False	NA	NA	NA	65787598	65934115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_65787705_65794023_65794151_65794350_65794412_65929449
94927	chrM	+	886	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	74	-3	74	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	72	False	NA	-78	True	NA	NA	NA	2824	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
94928	chr16	+	6895	1	Antisense	novelGene_ENSMUSG00000022914.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	83	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGCCTTAATGAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	95792703	95799598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95792700_95799600
94929	chr16	-	2779	19	Intergenic	novelGene_3608	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	15	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCGCAAGCTCAGCCGCC	NA	False	NA	NA	False	NA	NA	NA	20027191	19960198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_19960410_19969189_19969309_19971656_19971749_19972882_19972975_19975632_19975879_19977884_19978003_19980725_19980885_19989937_19990051_19993242_19993289_19998249_19998424_20004998_20005239_20008086_20008245_20009132_20009238_20011906_20012014_20012390_20012575_20022402_20022662_20024831_20024995_20026371_20026540_20027166
94930	chr8	-	8516	39	Antisense	novelGene_ENSMUSG00000031592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	265	18	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGGGGGGCGGGGGAAC	NA	False	NA	NA	False	NA	NA	NA	41787121	41692781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_41692989_41709020_41709147_41710826_41711072_41712071_41712342_41714045_41714219_41714396_41714513_41720222_41720399_41723474_41723583_41725275_41725498_41727136_41727336_41728031_41728204_41728687_41728843_41728960_41729187_41732784_41732929_41733056_41733187_41735614_41735756_41736590_41736784_41739001_41739198_41740713_41740937_41741043_41741190_41741665_41741857_41743755_41743927_41746491_41746853_41757022_41757183_41762549_41762734_41763048_41763178_41765194_41765311_41766335_41766496_41766879_41767017_41768954_41769088_41774886_41775089_41777989_41778053_41778298_41778437_41778863_41779023_41780561_41780637_41781805_41782059_41783663_41783761_41783840_41783955_41785016
94931	chr5	-	992	6	Antisense	novelGene_ENSMUSG00000067274.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCCCTGTCTTCCCTGGGC	NA	False	NA	NA	False	NA	NA	NA	115701564	115697915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_115697948_115698799_115699063_115699157_115699302_115699388_115699576_115700482_115700623_115701338
94932	chr5	+	5920	11	Intergenic	novelGene_691	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	62	40	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGGGCGCTCCAGCTTCC	NA	False	NA	NA	False	NA	NA	NA	32951145	33011546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_32951174_32952930_32953008_32977211_32977319_32977938_32978113_32979415_32979479_32984299_32988899_32989150_32989202_32992958_32993039_33001394_33001908_33009224_33009343_33011436
94933	chr9	-	1106	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	55	94	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4605.58607984792	4	1	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTCATCAAAGCTGTGGA	7155	False	NA	NA	False	NA	NA	NA	78388951	78386099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386112_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
94934	chr2	-	5176	9	Fusion	ENSMUSG00000081574.2_ENSMUSG00000078862.11	novel	1807	5	NA	NA	1471	198768	multi-exon	TRUE	non_canonical	0	0	junction_1	14	179	70	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGCCGGGCAATGATGGT	NA	False	NA	NA	False	NA	NA	NA	177594006	177295176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_177296262_177301577_177302809_177493955_177494960_177495042_177495457_177587554_177588586_177588669_177588804_177589962_177590024_177590229_177590357_177593917
94935	chr5	+	6007	16	ISM	ENSMUSG00000048271.15	ENSMUST00000059644.13	9510	19	19795	3143	19770	-9	3prime_fragment	TRUE	canonical	3	71	junction_12	16.7761735804086	161	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAATGCATTAACCCTCAT	3477	False	NA	NA	False	NA	NA	NA	28541969	28621094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_28542049_28543993_28544307_28547392_28547513_28557469_28557642_28563271_28563481_28566943_28567233_28573252_28573312_28591484_28591618_28592644_28592989_28594500_28594816_28595881_28596170_28598999_28599669_28613249_28613460_28615568_28615758_28618284_28618374_28618565
94936	chr17	-	3628	11	NNC	ENSMUSG00000024002.19	novel	4486	13	NA	NA	-28715	3897	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	78.0871308219223	7	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACTGACCCTAACCTGAT	NA	False	NA	NA	False	NA	NA	NA	32448697	32428639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448531_32448586
94938	chr2	+	4663	1	Intergenic	novelGene_2558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	81	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTCTCACCTGCACAAAC	NA	False	NA	NA	False	NA	NA	NA	5336207	5340870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_5336200_5340900
94939	chr5	-	3381	15	NNC	ENSMUSG00000028953.11	novel	2569	14	NA	NA	-68	863	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	403.861261285787	370	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTCATCAATAAATTCCT	NA	False	NA	NA	False	NA	NA	NA	24782533	24769479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_24769875_24769993_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
94940	chr14	-	2819	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	17	11	-4	-8	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	16797	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCCTTTTCATAGTTGG	8742	False	NA	NA	False	NA	NA	NA	52341468	52310844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
94941	chr11	+	4845	3	Intergenic	novelGene_2312	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	68	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57445632	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57446160_57446553_57450714_57450765
94942	chr15	-	3215	12	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	70	0	intron_retention	FALSE	non_canonical	0	0	junction_1	1111.6879727515	2	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	NA	False	NA	NA	NA	81284174	81247869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249783_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259059_81261875_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276496_81283685
94943	chr9	+	1460	7	FSM	ENSMUSG00000037674.16	ENSMUST00000184015.2	1554	7	31	63	31	0	multi-exon	FALSE	canonical	3	175	junction_3	16.2933183305987	71	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGACTGATTACCTGGTTTT	1203	False	NA	NA	False	NA	NA	NA	72440047	72519705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
94944	chrX	-	5179	4	Intergenic	novelGene_3969	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	144	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTAATGGCAAATGTGCT	NA	False	NA	NA	False	NA	NA	NA	88067681	88052075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_88054877_88063693_88064411_88065850_88067324_88067493
94945	chrX	-	5637	19	NIC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	-346	351	intron_retention	FALSE	non_canonical	3	1019	junction_18	119.722157772604	9	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTTGTACTACAAGAAC	7809	False	NA	NA	False	NA	NA	NA	37653885	37621799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809
94946	chrM	-	1144	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGTTTCTGTAGTTGAA	900	False	NA	60	True	NA	NA	NA	15288	14144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14100_15300
94947	chr4	+	1179	7	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	40	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3840.85314596756	2	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGTGTGCTGGGCATCT	NA	False	NA	NA	False	NA	NA	NA	150321739	150333328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321750_150329579_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
94948	chr6	+	9022	26	Antisense	novelGene_ENSMUSG00000076217.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	529	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCGTCGGCGGGCTAGGA	NA	False	NA	NA	False	NA	NA	NA	119900929	120014827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_119903648_119904006_119904195_119911215_119911414_119913331_119913533_119914317_119914978_119916596_119916663_119920765_119920828_119921661_119921746_119923197_119923280_119924933_119926381_119926968_119927090_119927201_119927262_119927459_119927632_119927973_119928091_119928593_119928759_119928858_119928959_119933033_119933160_119937606_119937685_119945435_119945625_119946197_119946530_119947816_119948039_119949728_119949817_119967051_119967207_119969296_119969518_119979149_119979326_120013833
94949	chr4	-	2929	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-38	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	21	28	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	9485	False	NA	NA	False	NA	NA	NA	147894283	147838435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147839517_147839684_147840218_147840541_147840673_147860154_147860286_147891546_147891641_147893153_147893824_147893994
94950	chr5	+	1024	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	236	1163	236	-1163	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAACAAGTGAATCATCC	781	False	NA	NA	False	NA	NA	NA	129097571	129100224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
94951	chr17	+	4487	20	Fusion	ENSMUSG00000116858.2_ENSMUSG00000046201.10	novel	544	5	NA	NA	6805	0	multi-exon	FALSE	canonical	3	45	junction_1	30.4359824955744	149	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTCTAGGAATTGTAT	5304	False	NA	NA	False	NA	NA	NA	3172328	3249134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_3172390_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034
94952	chr11	-	3901	10	Antisense	novelGene_ENSMUSG00000020412.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	90	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAACTGCGATTCCGTAG	NA	False	NA	NA	False	NA	NA	NA	4617112	4587752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_4587821_4590380_4590480_4596560_4596719_4597060_4597240_4599742_4599867_4606265_4606335_4607879_4607974_4608212_4608324_4609269_4609382_4614225
94953	chr9	-	4420	26	NNC	ENSMUSG00000035047.10	novel	2598	19	NA	NA	14	8167	intron_retention	TRUE	non_canonical	0	0	junction_1	64.9319643935096	434	14	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTTGGCTAGCGAGCAAG	NA	False	NA	NA	False	NA	NA	NA	21199235	21176585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21177013_21178033_21178118_21178201_21178375_21179544_21179819_21179895_21179963_21182012_21182145_21183761_21183842_21183928_21184007_21184084_21184206_21184548_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
94954	chrUn_JH584304v1	-	3476	4	Intergenic	novelGene_4608	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	149	junction_2	337.14718183936	7	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCCAACAATCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	59040	52195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55249_55511_55702_58563
94955	chr15	+	3287	7	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	259	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGGAAAGGGGGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	36771015	36794782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793724_36793920_36794388
94957	chr17	-	2791	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	41	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	182.090624567976	3	127	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2421	False	NA	NA	False	NA	NA	NA	45744426	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722749_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
94958	chr4	-	1687	2	Antisense	novelGene_ENSMUSG00000082468.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1630	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATCCCTTCATTCCATT	NA	False	NA	NA	False	NA	NA	NA	129315617	129257083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_129258570_129315416
94959	chr17	-	1687	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACTGGCAGGATCAACCA	NA	False	NA	NA	False	NA	NA	NA	40158954	40157267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40157300_40159000
94963	chr8	-	3031	8	NNC	ENSMUSG00000031781.15	novel	4359	9	NA	NA	-43	0	intron_retention	FALSE	non_canonical	0	0	junction_3	611.841215896239	12	126	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTTACTGTGAGTGTG	NA	False	NA	NA	False	NA	NA	NA	95564936	95549188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_95549836_95550280_95551960_95553262_95553337_95554909_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
94966	chr4	+	1905	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14_ENSMUSG00000078498.6_ENSMUSG00000087207.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	1943	-5	multi-exon	TRUE	canonical	0	0	junction_1	179.339231625431	1	30	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147058401	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147058498_147219028_147219122_147337800_147337859_147413438_147413566_147596801_147597042_147668359
94967	chr17	+	1261	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	43	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1843.54175095114	26	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3079	False	NA	NA	False	NA	NA	NA	35816957	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820418_35820910_35821037_35821184
94968	chr1	+	726	1	Antisense	novelGene_ENSMUSG00000084416.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGTGATTTCTTGTTGG	3234	False	NA	NA	False	NA	NA	NA	65033068	65033794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_65033100_65033800
94969	chrX	+	8630	4	Intergenic	novelGene_4042	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	90	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	122307145	122755359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_122310368_122641657_122641669_122748424_122752038_122753575
94970	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
94971	chr10	-	1794	11	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	3	-180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	621.201126850234	16	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGGTTCCTATTACTG	NA	False	NA	NA	False	NA	NA	NA	127358252	127353187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356245_127358170
94972	chr4	+	4288	15	NNC	ENSMUSG00000001985.10	novel	8973	16	NA	NA	118995	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.28817697392016	79	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCTTCCCAAGGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	125503487	125607965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_125503549_125517273_125517451_125526060_125526319_125533073_125533256_125535336_125535391_125543471_125543646_125544240_125544385_125550080_125550189_125553481_125553596_125564345_125564550_125579786_125580011_125584887_125585007_125587754_125587973_125598125_125598268_125605856
94973	chr2	-	4774	27	NIC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	2	-5	intron_retention	FALSE	canonical	3	271	junction_23	29.6333611774729	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGACCATTTGCCTGCAG	NA	False	NA	NA	False	NA	NA	NA	103591613	103551609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
94975	chr16	+	1623	7	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	41	-211	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	207.076005906581	1	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATCTGGTTGGTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	48130880	48139875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48130903_48131937_48132074_48134318_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
94976	chr11	-	2221	14	NIC	ENSMUSG00000020516.16	novel	5531	15	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	71.681990013585	28	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	86435596	86392858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_86393789_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
94977	chr13	+	4649	7	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	2	2776	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	111.634323674317	57	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGACCAATTTCGTTTAA	NA	False	NA	NA	False	NA	NA	NA	62277731	62324009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62320940_62321021_62321267_62321322_62321979_62322536
94978	chr4	+	3169	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-13	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	38.0690162730796	1	52	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206928	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207191_146223682_146223715_146291416_146291510_146365127_146365259_146368115_146368209_146384326_146384431_146388486_146388614_146390758_146390904_146391317_146392546_146392713_146393401_146552581
94979	chr17	-	1825	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	626	1726	mono-exon	FALSE	NA	NA	NA	NA	NA	32	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACTGGCAGGATCAACCA	NA	False	NA	NA	False	NA	NA	NA	40159092	40157267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157300_40159100
94980	chr4	+	2869	6	FSM	ENSMUSG00000065999.14	ENSMUST00000081742.7	2762	6	-117	10	-55	-10	multi-exon	FALSE	canonical	3	18	junction_2	34.5913283931103	15	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCAACAAGTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	147637678	147669645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_147637884_147646898_147646979_147647371_147647416_147661528_147661587_147665698_147665826_147667290
94981	chr8	+	2751	9	FSM	ENSMUSG00000053886.5	ENSMUST00000066594.4	2718	9	-32	-1	-32	1	multi-exon	FALSE	canonical	3	24	junction_7	6.37867541108654	74	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGAGTTGCCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	68729186	68800347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_68729525_68734684_68735064_68746954_68747112_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
94982	chr8	-	3395	4	NNC	ENSMUSG00000052488.8	novel	3713	18	NA	NA	-14195	3	intron_retention	FALSE	non_canonical	0	0	junction_3	235.979283459846	7	89	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTCCTCTAGCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	73243265	73214329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_73217161_73217927_73218364_73220226_73220339_73243249
94983	chr11	+	3104	9	ISM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	-2	4	1	-3	intron_retention	FALSE	canonical	3	1895	junction_3	134.129543259492	12	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATATGGTTTTGAGAGGT	NA	False	NA	NA	False	NA	NA	NA	69471228	69482695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614
94984	chr14	-	2479	14	NNC	ENSMUSG00000022099.18	novel	2643	16	NA	NA	199	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	89.8088700301628	1	39	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTGTTTCTATCCATGC	NA	False	NA	NA	False	NA	NA	NA	70864295	70841109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_70842295_70842407_70842489_70842742_70842809_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855678_70855849_70864174
94985	chr4	+	3161	4	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-27	331	multi-exon	FALSE	non_canonical	0	0	junction_1	26.8700576850888	1	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTTTTACATATGGTGC	4083	False	NA	NA	False	NA	NA	NA	147314713	147418522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147393100_147393181_147409230_147409335_147415724
94986	chr3	+	7497	14	NNC	ENSMUSG00000039068.17	novel	7539	14	NA	NA	20	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	83.4846830723595	107	114	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAATCATCCTGGCTTC	NA	False	NA	NA	False	NA	NA	NA	152102350	152168453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152102406_152125668_152125778_152128256_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
94988	chr19	-	4672	31	NIC	ENSMUSG00000025159.9	novel	6607	31	NA	NA	-1	1238	combination_of_known_junctions	FALSE	canonical	0	0	junction_26	52.2224302596329	4	163	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACACATTGCTGTAGGGCC	NA	False	NA	NA	False	NA	NA	NA	41969557	41931405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942454_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951898_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
94989	chr8	+	4835	6	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	184	-179	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	635.480164914689	4	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGATGTCTTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	20016649	20045709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20016735_20024893_20024954_20030550_20030924_20035860_20036160_20039783_20039904_20041811
94990	chr2	-	5144	2	NNC	ENSMUSG00000086563.2	novel	768	3	NA	NA	-32	2815	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	166	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	150548828	150543640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_150548342_150548385
94991	chr4	+	2234	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14315	768	multi-exon	FALSE	non_canonical	0	0	junction_1	45.7262385167301	5	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145158994	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145173287_145173342_145176036_145176318_145176484
94992	chr2	-	3876	14	Antisense	novelGene_ENSMUSG00000005506.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	66	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGCCAGAGCAGAACACCC	NA	False	NA	NA	False	NA	NA	NA	90846079	90770850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_90770984_90828921_90829111_90831348_90831433_90831805_90831855_90833554_90833689_90834153_90834234_90835043_90835208_90836976_90837039_90838514_90838643_90839546_90839659_90840735_90840920_90843039_90843186_90843580_90843745_90843832
94993	chr7	+	3786	13	FSM	ENSMUSG00000040268.18	ENSMUST00000120441.8	3777	13	171	-180	17	180	multi-exon	FALSE	canonical	3	31	junction_12	62.5128320160482	230	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATCCTTGAATTCTTGG	NA	False	NA	NA	False	NA	NA	NA	130467656	130515222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_130467714_130479463_130479625_130484059_130484117_130487132_130487179_130493910_130494009_130499054_130499181_130502246_130502391_130503906_130503976_130506599_130506665_130507120_130507185_130510065_130510156_130511317_130511466_130512561
94994	chr3	-	4078	27	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-4	521	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	342.190420707051	201	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTGCAGTAAAAGGTT	3543	False	NA	NA	False	NA	NA	NA	89959786	89906925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932667_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
94995	chr15	+	2897	17	NNC	ENSMUSG00000022272.18	novel	618	2	NA	NA	3092	-9302	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	183.666647761645	1	76	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCCATGTCCGACCCCAT	3176	False	NA	NA	False	NA	NA	NA	25761962	25804455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_25762040_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384
94996	chr7	+	1387	7	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3046.9790321271	35	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497155_46499665_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
94997	chr13	-	6177	16	ISM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	39	13653	-13	-4466	5prime_fragment	FALSE	canonical	3	963	junction_9	79.1197123913433	38	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCCAATTCTGGCCTCT	NA	False	NA	NA	False	NA	NA	NA	6698774	6643456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
94998	chrM	+	700	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	444	0	444	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	17	False	NA	19	True	NA	NA	NA	14588	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14600_15300
94999	chr8	+	7300	6	Fusion	ENSMUSG00000071796.14_ENSMUSG00000071793.13	novel	4009	6	NA	NA	21	-2027	intron_retention	FALSE	non_canonical	0	0	junction_3	348.735773903395	30	209	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTCAAAGACAGACAGACAG	NA	False	NA	NA	False	NA	NA	NA	20016486	20170967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20016689_20030550_20030924_20039783_20042916_20043091_20044952_20169058_20170166_20170341
95000	chr1	+	1897	2	Intergenic	novelGene_412	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGAGTAGCTGGGTAAGGG	NA	False	NA	NA	False	NA	NA	NA	90553988	90555973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_90554216_90554303
95001	chr4	+	4030	9	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36458	92522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	34.0183773863481	49	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATAGTTGGTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	145136851	145269980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145174456_145174578_145176036_145176553_145178992_145180669_145268434_145268629_145268703_145268853_145268899
95002	chr17	+	971	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	230	1	199	-1	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	146	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547819	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
95004	chr11	-	1335	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6152.71604740541	9	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113076	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102908_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
95006	chr16	+	6055	31	NNC	ENSMUSG00000025616.15	novel	3205	18	NA	NA	-8	12380	intron_retention	FALSE	non_canonical	0	0	junction_17	114.97988229831	237	54	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCCGGTCGCCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	87251906	87292785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994_87280954_87281691_87281814_87282469_87282633_87282721_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592_87290674_87291223_87291316_87292616
95007	chr5	+	381	1	Intergenic	novelGene_920	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4751	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTTCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
95009	chr11	-	2728	21	NIC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	-5	-10	intron_retention	FALSE	canonical	3	20	junction_19	9.10714005602198	3	52	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGGCTTCTTTCTT	9568	False	NA	NA	False	NA	NA	NA	69786370	69772402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
95010	chr8	-	4625	4	Antisense	novelGene_ENSMUSG00000110669.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	199	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCTCCGGCGGACACTGC	NA	False	NA	NA	False	NA	NA	NA	20043775	19834739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_19834861_20030544_20030754_20035856_20036158_20039781
95011	chr17	+	4762	12	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	57.6182936973583	36	32	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9336	False	NA	NA	False	NA	NA	NA	36152513	36170562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36158449_36158617_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164593_36169828
95013	chr13	-	1458	3	FSM	ENSMUSG00000021546.19	ENSMUST00000177051.8	874	3	128	-712	128	1	multi-exon	FALSE	canonical	3	5484	junction_1	576.5	1	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	NA	False	NA	NA	False	NA	NA	NA	58541554	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_58540291_58541009_58541180_58541505
95014	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	364	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	59	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
95015	chr12	+	6013	24	NNC	ENSMUSG00000042700.17	novel	6179	24	NA	NA	48	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	42.2358576905717	21	78	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATTATGAATACTCTTT	NA	False	NA	NA	False	NA	NA	NA	82216141	82493898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_82216278_82216789_82216851_82281236_82281303_82312730_82312800_82358122_82358184_82387435_82387497_82387532_82389274_82404006_82404138_82409716_82409906_82419141_82419317_82431424_82431529_82434328_82434487_82442966_82443541_82444119_82444395_82449683_82449954_82463677_82463825_82467311_82467437_82469148_82469268_82471786_82472230_82479526_82479767_82480462_82480629_82484461_82484709_82487588_82487736_82493590
95016	chr19	+	1913	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-5	-2	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	17	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAAAAGATATGTAGCTTC	4124	False	NA	NA	False	NA	NA	NA	41921913	41932532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
95017	chr9	+	1419	6	Antisense	novelGene_ENSMUSG00000037742.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGTCCAAGGCGACTGCC	NA	False	NA	NA	False	NA	NA	NA	78386237	78388952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386816_78386904_78387057_78387133_78387433_78387524_78387710_78387797_78387968_78388917
95018	chr17	+	6467	17	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-17	-10	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_16	46.5349331148117	1	78	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTACTTTATATTTTCCTG	9212	False	NA	NA	False	NA	NA	NA	36152389	36170552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354_36168953_36169824
95019	chr9	+	4265	2	FSM	ENSMUSG00000066415.5	ENSMUST00000085177.5	4889	2	222	402	222	-402	multi-exon	FALSE	canonical	3	56	junction_1	0	168	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGTAGAATACTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	100957036	100981597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_100957474_100977769
95020	chr2	-	967	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-73	185	multi-exon	FALSE	non_canonical	0	0	junction_1	0	216	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	28824694	28823436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28824239_28824529
95021	chrUn_JH584304v1	-	2632	9	Intergenic	novelGene_4688	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_8	345.558402263641	3	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTATATAATGCTGGAT	NA	False	NA	NA	False	NA	NA	NA	61455	53151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55464_55702_56985_57152_57410_57500_58563_58836_59591_59774_61381
95022	chr18	+	1585	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	48	-252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1596.2734598676	2	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTGGTTTTGTCAT	NA	False	NA	NA	False	NA	NA	NA	77861739	77870103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866894_77867601_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
95023	chr11	-	3855	16	ISM	ENSMUSG00000039703.16	ENSMUST00000044271.15	4121	17	4624	12	4624	-12	3prime_fragment	FALSE	canonical	3	355	junction_10	36.6050391188001	171	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGAAGCGATTGTCCTGC	NA	False	NA	NA	False	NA	NA	NA	120323910	120271207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120273453_120274122_120274226_120275368_120275486_120276595_120276692_120280193_120280266_120295031_120295193_120299598_120299726_120300437_120300510_120302483_120302571_120304385_120304566_120307082_120307207_120309070_120309166_120309894_120309944_120312190_120312368_120319349_120319463_120323873
95024	chr15	+	3372	11	NNC	ENSMUSG00000022407.11	novel	1932	11	NA	NA	0	6	intron_retention	TRUE	non_canonical	0	0	junction_7	427.945568968765	2	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAAAAGAATGTACATT	NA	False	NA	NA	False	NA	NA	NA	80832704	80853326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80832902_80836397_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80849149_80849786_80850384_80851312_80851403_80851789_80851967_80852862
95025	chr11	+	3893	12	NIC	ENSMUSG00000020271.18	novel	620	5	NA	NA	9870	-4	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	121.957112093074	154	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTCTGTTCTGTCACAT	NA	False	NA	NA	False	NA	NA	NA	32602773	32696785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_32602905_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
95026	chr13	-	4037	5	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18653	4066	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.3579076082419	3	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCATAAAATTTGTCACACA	NA	False	NA	NA	False	NA	NA	NA	74739500	74723410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74725525_74725953_74727579_74728971_74729033_74729232_74729360_74739390
95027	chr2	+	5274	11	NIC	ENSMUSG00000027395.16	novel	3998	15	NA	NA	27	2	intron_retention	FALSE	canonical	3	249	junction_5	33.6297487353087	76	117	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTCAGAGCCCTCTAGT	NA	False	NA	NA	False	NA	NA	NA	128942973	128965060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128961117_128964989
95028	chr4	-	1257	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-183	-72	183	mono-exon	FALSE	NA	NA	NA	NA	NA	16	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	91740978	91739721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
95030	chr4	-	4376	33	NNC	ENSMUSG00000028465.17	novel	8393	57	NA	NA	1757	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	53.1646818709329	52	14	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCAGCCTGGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	43545890	43531519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_43531661_43533594_43533679_43533862_43533969_43534389_43534498_43534579_43534766_43535519_43535637_43535737_43535864_43535952_43536137_43536243_43536411_43536523_43536671_43537787_43537908_43537985_43538088_43538189_43538340_43538431_43538603_43538677_43538780_43539090_43539224_43539365_43539548_43539636_43539778_43539975_43540138_43540529_43540674_43542480_43542604_43542701_43542792_43542874_43542969_43543143_43543284_43543435_43543634_43543816_43543937_43544279_43544489_43544575_43544679_43544840_43544970_43545093_43545229_43545406_43545521_43545605_43545723_43545859
95031	chr3	+	5230	17	NNC	ENSMUSG00000027959.15	novel	4340	18	NA	NA	-9	-90	intron_retention	FALSE	non_canonical	0	0	junction_16	17.1508700581049	26	165	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGGCTTGAGCGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	116388642	116424563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031_116415158_116420721_116422262_116422356_116422953_116423257
95032	chr5	+	5165	13	ISM	ENSMUSG00000002748.8	ENSMUST00000002825.6	6492	19	29361	15	8217	-15	3prime_fragment	FALSE	canonical	3	263	junction_1	21.7030143835674	233	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTTTATAAAGAAGAGAC	NA	False	NA	NA	False	NA	NA	NA	135245478	135274968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_135247149_135250811_135250951_135251938_135252073_135255363_135255467_135257380_135257480_135259010_135259189_135260453_135260637_135265128_135265277_135266772_135266921_135268880_135269000_135271265_135271397_135272662_135272767_135272959
95033	chrM	+	937	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-154	1	-154	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	676	False	NA	NA	False	NA	NA	NA	8452	9389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_8500_9400
95034	chr3	-	1891	4	Antisense	novelGene_ENSMUSG00000025764.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCACACAAGCGCCCACCG	NA	False	NA	NA	False	NA	NA	NA	41568774	41555884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_41555916_41558901_41559426_41564236_41564354_41567555
95035	chr6	-	2545	8	Fusion	ENSMUSG00000068262.5_ENSMUSG00000030055.17_ENSMUSG00000030057.16	novel	952	6	NA	NA	52	-247	multi-exon	FALSE	non_canonical	0	0	junction_1	4933.07237542938	24	16	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTATGGTGAGGTGACCA	NA	False	NA	NA	False	NA	NA	NA	87827952	87742224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_-_87743076_87771767_87771780_87818703_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
95036	chr13	-	4623	3	Intergenic	novelGene_1447	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	215	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAGAAAGGCACCCGGAAG	NA	False	NA	NA	False	NA	NA	NA	66725699	66711978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66712083_66720981_66721107_66721305
95037	chr4	+	4053	10	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-13	65	multi-exon	TRUE	non_canonical	0	0	junction_8	166.894510927645	24	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTCTCATAAAGTATTT	NA	False	NA	NA	False	NA	NA	NA	145311759	145431076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145427474_145428621_145428705_145429359_145429693
95038	chr11	-	6054	27	NIC	ENSMUSG00000037275.15	novel	6213	28	NA	NA	46	1	combination_of_known_splicesites	TRUE	canonical	3	10	junction_11	56.1043116612462	268	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCTCTTTTCTTTATCAA	NA	False	NA	NA	False	NA	NA	NA	58059319	58010826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_58012611_58013107_58013205_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58032413_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
95039	chr15	-	1866	13	Antisense	novelGene_ENSMUSG00000033047.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	172	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAGAAGCCCGTGGGAGA	NA	False	NA	NA	False	NA	NA	NA	78978600	78959449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_78959491_78959968_78960018_78961028_78961239_78962270_78962353_78963191_78963255_78965786_78965857_78966053_78966125_78968308_78968482_78969754_78969912_78970633_78970804_78973662_78974160_78977534_78977616_78978398
95040	chr17	+	3662	16	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	20	0	intron_retention	FALSE	canonical	3	1413	junction_6	326.105190936231	6	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	440	False	NA	NA	False	NA	NA	NA	56610340	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
95041	chr8	-	3769	10	NNC	ENSMUSG00000031714.10	novel	4985	11	NA	NA	30542	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	143.178210632764	25	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGAGCTGTGTTACTTT	NA	False	NA	NA	False	NA	NA	NA	81526971	81491066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492864_81492948_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729
95042	chr16	-	740	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	-40	-85	-40	85	mono-exon	FALSE	NA	NA	NA	NA	NA	39	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGGAAGGAAGGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	33827867	33827127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33827100_33827900
95044	chr12	-	4514	19	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	-79479	-2525	intron_retention	FALSE	non_canonical	0	0	junction_13	133.001902891799	2055	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTACAACACAGCAAATAT	NA	False	NA	NA	False	NA	NA	NA	55429262	55328300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_55328591_55329698_55329759_55331561_55331663_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55351668_55353121_55353170_55355519_55355653_55384942_55385053_55423898_55424048_55426066_55426260_55429038
95045	chr2	-	2509	10	NNC	ENSMUSG00000027210.21	novel	3697	13	NA	NA	-1291	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.1158565538645	6	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGTTAGGCTTTGGTG	3938	False	NA	NA	False	NA	NA	NA	115890614	115693554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115890328
95046	chr6	-	2662	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_13	262.360895846583	8	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATTCTTTGTAAGCGTG	3045	False	NA	NA	False	NA	NA	NA	71885737	71857626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71871998_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
95048	chr7	+	1440	9	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2432	-18091	intron_retention	FALSE	non_canonical	0	0	junction_1	0	4	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCGCGTTCCAAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	126394407	126398310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394686_126394783_126394990_126395130_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505_126396818_126396861_126396953_126398220
95049	chr8	-	6518	14	FSM	ENSMUSG00000045636.17	ENSMUST00000059115.13	6548	14	13	17	5	-13	multi-exon	TRUE	canonical	3	90	junction_13	16.5128603280297	147	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATATCTAAGCATTTGAAT	NA	False	NA	NA	False	NA	NA	NA	41586750	41443967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586517
95050	chr19	+	822	4	NNC	ENSMUSG00000024661.8	novel	929	4	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2635.72891035647	16	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTACCCAGCTTCTTTTCT	4927	False	NA	NA	False	NA	NA	NA	9960067	9962448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9960348_9961544_9961692_9961923_9962054_9962183
95051	chr17	+	2482	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-29	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	95.1955224787385	3	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTCTAAGGGATGCAACA	NA	False	NA	NA	False	NA	NA	NA	17284345	17309884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505_17307766_17307973
95052	chr17	+	694	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	54	1101	54	-1101	mono-exon	FALSE	NA	NA	NA	NA	NA	51	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTCTCGGCGCCCCCTC	NA	False	NA	29	True	NA	NA	NA	40157297	40157991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40158000
95053	chr10	-	1575	12	FSM	ENSMUSG00000025364.14	ENSMUST00000026425.13	2432	12	-16	873	-16	-871	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	9903	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACCGTCGTCAAGCCCCT	8729	False	NA	NA	False	NA	NA	NA	128401819	128394507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
95054	chr4	+	3285	8	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	72.8050233745683	4	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146033893	146063188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146035050_146035222_146036265_146036397_146041696_146041784_146043550_146043631_146054375_146054480_146058453_146058581_146060726
95055	chr11	+	4345	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-10	-221	intron_retention	FALSE	canonical	3	2354	junction_11	204.801186621725	38	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332170	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
95056	chr4	-	1104	2	Genic_Genomic	ENSMUSG00000095937.2	novel	1002	1	NA	NA	-72	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_91740622_91740782
95057	chr4	-	4556	14	NIC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	-8	-160	intron_retention	FALSE	canonical	3	283	junction_3	268.399970899213	45	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCCTGCCCGGGTATGT	NA	False	NA	NA	False	NA	NA	NA	135080521	135051238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135074169_135074425_135074516_135080407
95058	chrM	+	639	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	505	0	505	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	0	True	NA	33	True	NA	NA	NA	14649	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14600_15300
95059	chr17	+	6760	6	NNC	ENSMUSG00000060149.8	novel	1598	4	NA	NA	-6	11623	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	11.6206712370672	26	72	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTGGGTAGAATGCTTTT	NA	False	NA	NA	False	NA	NA	NA	17171794	17206042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17171971_17191432_17191494_17192686_17195274_17201204_17201579_17201618_17202214_17203075
95060	chr11	+	2356	7	NIC	ENSMUSG00000020515.14	novel	2035	7	NA	NA	-87	2	combination_of_known_junctions	FALSE	canonical	2	4	junction_6	277.391069711257	999	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGAAGTGTGGTCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	57994891	58009422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008032
95062	chrX	-	4734	15	NNC	ENSMUSG00000004317.15	novel	3052	15	NA	NA	-40	1619	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_13	17.5557421270835	69	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAGTCCTTTATTATCC	3216	False	NA	NA	False	NA	NA	NA	7185512	7024088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7079102_7079250_7182897_7183063_7184640_7184728_7185344
95063	chr17	-	1524	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	800	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4037.90436829551	3	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36149124	36145696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146196_36146362_36146932_36147054_36147166_36147519_36147629_36148888
95064	chr10	+	1774	15	Antisense	novelGene_ENSMUSG00000034024.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCCAGCCTTGAAGATAT	NA	False	NA	NA	False	NA	NA	NA	116886912	116898910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_116887184_116888922_116889071_116889948_116890024_116890763_116890884_116891009_116891136_116891936_116892063_116893076_116893183_116893695_116893792_116893994_116894102_116896550_116896756_116897202_116897315_116897408_116897487_116897929_116898041_116898720_116898787_116898883
95065	chr1	-	2859	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	73	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	646.03758295764	1	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCATGCTTTGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	20890411	20873231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876098_20876945_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
95066	chr1	-	3952	9	ISM	ENSMUSG00000022995.17	ENSMUST00000177811.8	4231	15	98078	-1492	1862	1447	3prime_fragment	FALSE	canonical	3	269	junction_7	52.846327923518	411	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTTGTGACACTTAGAT	NA	False	NA	NA	False	NA	NA	NA	181749467	181730517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222
95067	chr2	+	1117	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11385	55	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGAGAGAGGCCCTCAG	NA	False	NA	NA	False	NA	NA	NA	11413649	11426086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
95068	chr17	-	1138	3	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	156	-2232	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	51	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCTATCCTTGAGAATCA	NA	False	NA	NA	False	NA	NA	NA	22580225	22559201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_22560099_22577799_22577963_22580147
95069	chr15	+	1684	3	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98462	-144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATAGTGCTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	98829309	98935847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98829931_98830036_98830291_98935038
95070	chr14	+	3969	7	NIC	ENSMUSG00000040618.8	novel	2417	9	NA	NA	607	-3	intron_retention	FALSE	canonical	3	1534	junction_4	90.992673697758	6	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCCACAGGACTCCCCAT	9699	False	NA	NA	False	NA	NA	NA	55778530	55786326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55780109_55781045_55781231_55781316_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
95071	chr7	+	659	2	Antisense	novelGene_ENSMUSG00000050855.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTGTCTGAAAACAG	NA	False	NA	NA	False	NA	NA	NA	29501271	29540317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_29501395_29539781
95072	chr2	-	4389	12	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	20946	-1303	-150	-774	3prime_fragment	FALSE	canonical	3	1559	junction_1	138.731323663004	1	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGATTGTTTATAGCAAA	NA	False	NA	NA	False	NA	NA	NA	103606503	103594059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449
95073	chr19	+	6310	4	Intergenic	novelGene_1189	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGACCCGCAGTCCTCCA	NA	False	NA	NA	False	NA	NA	NA	4835739	4861600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_4840919_4842311_4842848_4843842_4844039_4861201
95074	chrY	-	3841	3	Intergenic	novelGene_4701	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	141	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTACTTGCCTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	2784257	2777043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_-_2777168_2779821_2781581_2782299
95075	chr2	+	6806	5	Fusion	ENSMUSG00000078901.9_ENSMUSG00000078896.12	novel	3382	3	NA	NA	8	4379	multi-exon	FALSE	non_canonical	0	0	junction_1	4.76313972081441	122	107	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCACGATG	NA	False	NA	NA	False	NA	NA	NA	175116925	175328343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_175116997_175125422_175125484_175126636_175126810_175321596_175322048_175322293
95076	chr9	-	1531	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	68	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5898.33703994055	11	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTGTTGGTCAATGC	7168	False	NA	NA	False	NA	NA	NA	78388938	78385737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386575_78386817_78386905_78387057_78387133_78387431_78387522_78387666_78387927_78387971_78388920
95077	chr9	+	747	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-213	-44	213	mono-exon	FALSE	NA	NA	NA	NA	NA	476	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	96777666	96778413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
95078	chr4	+	472	1	Intergenic	novelGene_2156	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGGTTCCTACATCCTGT	NA	False	NA	NA	False	NA	NA	NA	148269916	148270388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_148269900_148270400
95079	chr4	+	4531	24	FSM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	63	0	63	0	multi-exon	FALSE	canonical	3	177	junction_17	193.960434840598	180	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATTTTGTTTATTGAG	-23	True	NA	NA	False	NA	NA	NA	40970968	41025993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
95080	chr9	-	3291	16	NNC	ENSMUSG00000035047.10	novel	2598	19	NA	NA	-3	396	intron_retention	FALSE	non_canonical	0	0	junction_9	42.0308881128576	6	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTTCACTGAAGTGCACC	NA	False	NA	NA	False	NA	NA	NA	21199255	21184356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191786_21192345_21192466_21192957_21193036_21193110_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
95081	chrM	+	777	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	65	-161	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCATTAATTCAAGCCTAC	-11	True	NA	NA	False	NA	NA	NA	7765	8542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8500
95082	chr14	-	2683	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	37	412	-14	-412	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	3	87	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAAAACTTAGTGTTCAG	NA	False	NA	NA	False	NA	NA	NA	20398152	20370331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
95083	chr8	+	1834	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-25	-2988	multi-exon	FALSE	canonical	0	0	junction_4	560.311520495519	2	80	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAAGTTACTGAGGGAAA	NA	False	NA	NA	False	NA	NA	NA	19834736	20042900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041821
95084	chr4	+	1902	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-6	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0.4	2	53	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	920	False	NA	NA	False	NA	NA	NA	145237354	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237502_145239545_145239640_145245504_145245591_145343640_145343746_145348721_145349164_145350882
95086	chr13	-	1796	6	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	0	937	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	280.816381288557	772	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGTTTAAAAAAAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	108295125	108188185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_108189199_108189246_108189489_108215611_108215873_108217886_108217928_108228067_108228158_108294976
95087	chr2	-	4034	23	NIC	ENSMUSG00000039671.19	novel	6188	24	NA	NA	42	-48	combination_of_known_junctions	FALSE	canonical	3	8	junction_11	190.118797136931	72	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTAGCGTACCTTTCCT	NA	False	NA	NA	False	NA	NA	NA	165740894	165627276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_165627659_165629083_165629168_165633824_165633892_165634723_165634888_165636314_165636555_165638002_165638082_165639853_165639935_165647106_165647298_165649438_165649850_165654268_165654779_165657236_165657390_165662461_165662609_165670127_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
95088	chr12	-	3335	10	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	714	-197	-9	197	3prime_fragment	FALSE	canonical	3	11114	junction_7	1571.89128829643	40340	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTCTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	110662115	110656841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952
95090	chr17	+	2056	1	Intergenic	novelGene_190	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGCTGTGGTTTGGAGGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
95091	chrM	+	1294	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	322	-71	322	71	mono-exon	FALSE	NA	NA	NA	NA	NA	7	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	243	False	NA	29	True	NA	NA	NA	5649	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5600_6900
95092	chr3	+	869	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	0	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1786.0104814922	14	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACCGATGTGTTTGTCTT	3620	False	NA	NA	False	NA	NA	NA	88486977	88495719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494201_88495258
95093	chr17	+	4771	2	Intergenic	novelGene_237	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCAACAAGACCGTTTT	NA	False	NA	NA	False	NA	NA	NA	40489659	40494834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40490582_40490985
95094	chr4	+	2378	7	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-34	722	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	120.012499349026	460	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056398	147075934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383_147073909_147074161_147074542_147074961
95095	chr1	-	508	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	335	31	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837070	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_86836693_86836771
95096	chr11	-	3228	4	Intergenic	novelGene_2552	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	17.326921891156	105	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATTGTGAC	NA	False	NA	NA	False	NA	NA	NA	121847570	121832042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121834966_121836089_121836151_121836329_121836457_121847453
95097	chr4	-	6603	1	Antisense	novelGene_ENSMUSG00000028601.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	198	46	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTTCTTATGAGTGTC	NA	False	NA	-84	True	NA	NA	NA	108038904	108032301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108032300_108038900
95098	chr3	+	1476	12	NIC	ENSMUSG00000027714.12	novel	1617	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	139.294503400838	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGCACAAGCTTCCC	NA	False	NA	NA	False	NA	NA	NA	36606773	36619794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617261_36617407_36619366_36619446_36619577
95100	chr15	-	4981	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	119	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	9795	False	NA	NA	False	NA	NA	NA	22705095	22699885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22703825_22703960_22704588_22704680
95101	chr14	-	4372	3	Antisense	novelGene_ENSMUSG00000114938.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	231	74	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGATGAGTGCAGTGCAG	NA	False	NA	NA	False	NA	NA	NA	42370460	42274396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_42275236_42365840_42368723_42369809
95102	chr17	+	2998	14	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	597.665923583583	27	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	NA	False	NA	NA	NA	56610399	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625319_56629426
95103	chr17	+	2914	5	Antisense	novelGene_ENSMUSG00000024165.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCCCGCGCTTTCACAGC	1455	False	NA	NA	False	NA	NA	NA	25161131	25179593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_25163655_25164555_25164602_25167610_25167754_25174990_25175139_25179539
95104	chr13	-	2866	19	Antisense	novelGene_ENSMUSG00000021500.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	34	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTCGCGCCATTTTTCA	9200	False	NA	NA	False	NA	NA	NA	55826930	55795512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55795605_55798226_55798378_55799854_55799969_55800723_55800886_55801408_55801535_55801816_55801991_55802819_55802941_55806829_55806909_55808524_55808610_55811028_55811196_55811590_55811753_55813997_55814192_55817522_55817663_55818016_55818167_55821753_55821931_55823708_55823925_55824579_55824728_55825333_55825407_55826595
95105	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
95106	chr11	-	1642	4	NNC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	37	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	970.659340631694	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGGCTTGTGTGTCAGTG	1884	False	NA	NA	False	NA	NA	NA	59119059	59102238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59103454_59103897_59104080_59104165_59104350_59118998
95107	chr16	-	2578	9	Genic_Genomic	ENSMUSG00000091238.2	novel	549	2	NA	NA	-18092	6464	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	64	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCTGAGGAGACGTGGC	NA	False	NA	NA	False	NA	NA	NA	38411754	38383220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_38383410_38384476_38384661_38393412_38393638_38396103_38396185_38402327_38402489_38405535_38405883_38405981_38406771_38408544_38408664_38411271
95108	chr19	-	3944	17	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2081	11	NA	NA	-4	-11	intron_retention	TRUE	non_canonical	0	0	junction_1	204.570195394515	11	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGCCCCCGGCCCGCCG	6003	False	NA	NA	False	NA	NA	NA	4251630	4242118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4242269_4242739_4242871_4243018_4243252_4243765_4243870_4244464_4244687_4244767_4244899_4244973_4245043_4245096_4246082_4246179_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
95109	chr9	+	3622	12	NIC	ENSMUSG00000009741.16	novel	1623	16	NA	NA	-13163	-14	intron_retention	FALSE	canonical	3	224	junction_4	67.8756763356103	36	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATTGTTTTGTAAACGT	NA	False	NA	NA	False	NA	NA	NA	113785129	113806253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113799209_113799329_113801818_113801962_113802586_113802639_113804413
95110	chr17	+	2190	2	Intergenic	novelGene_225	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCGGCCCTCCCCTCGTT	NA	False	NA	NA	False	NA	NA	NA	40154060	40156292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154395_40154436
95111	chr17	-	5713	5	NIC	ENSMUSG00000015120.16	novel	1138	7	NA	NA	-3605	1406	intron_retention	FALSE	canonical	3	4553	junction_3	229.624149426841	1	111	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTCGGGTTGTGTCCTCT	8656	False	NA	NA	False	NA	NA	NA	25488448	25479483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25481466_25483739_25483820_25484092_25487588_25488165_25488250_25488376
95112	chr4	+	3146	1	Antisense	novelGene_ENSMUSG00000078234.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAATGGAGCAAGGGCTTA	NA	False	NA	NA	False	NA	NA	NA	139688389	139691535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_139688400_139691500
95113	chr16	+	3404	10	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	8	-4	intron_retention	FALSE	canonical	3	441	junction_1	602.589248550898	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6082	False	NA	NA	False	NA	NA	NA	22926536	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
95115	chr2	-	3233	19	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	0	410	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_18	47.4951914395188	164	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAATGTCTGCATGGAGT	NA	False	NA	NA	False	NA	NA	NA	71178172	71104623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71159421_71159467_71163948_71164065_71174233_71174377_71177931
95116	chr10	-	832	1	Antisense	novelGene_ENSMUSG00000047642.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTTATAAGAGTTGCCT	7004	False	NA	NA	False	NA	NA	NA	121491141	121490309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_121490300_121491100
95117	chr4	-	2338	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	66	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	463.737742926836	7	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137523629	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469991_137470579_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
95118	chr16	+	3149	6	NIC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	0	-169	intron_retention	FALSE	canonical	3	478	junction_4	53.1766866211125	33	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCACAGGCTGGTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	48130839	48139917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48137847_48138995
95119	chr4	-	4007	5	Intergenic	novelGene_2058	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	48.4974226119286	10	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGAAAAGGTAGAACATCC	NA	False	NA	NA	False	NA	NA	NA	146395018	146293424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146293570_146384323_146384428_146390755_146391607_146391943_146392241_146392408
95121	chr4	-	1263	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-189	-72	189	mono-exon	FALSE	NA	NA	NA	NA	NA	20	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGACA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
95122	chr11	-	2582	13	NNC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_5	333.451604018068	7	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGAGATCTCTAGTGATG	NA	False	NA	NA	False	NA	NA	NA	120687224	120680024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683640_120683853_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
95123	chrM	-	1297	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1223	-5	1223	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGTAGGAGTCAAAAACTT	9245	False	NA	NA	False	NA	NA	NA	6943	5646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5600_6900
95124	chr15	+	2791	8	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	15164	0	2913	0	3prime_fragment	FALSE	canonical	3	809	junction_1	45.8066032135017	4	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	101997371	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
95125	chr4	+	3846	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16639	-863	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	292.640089909469	3661	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTATGCAATTATGTCCA	1855	False	NA	NA	False	NA	NA	NA	146516840	146553886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146518646_146518740_146533486_146533533_146547961_146548020_146548860_146548988_146550437_146551898_146551969
95126	chr13	+	1247	4	NNC	ENSMUSG00000021578.18	novel	2682	4	NA	NA	-1	623	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	200.732547324931	20	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAATGGTGTTGCTTTTT	4391	False	NA	NA	False	NA	NA	NA	74498468	74505790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_74498528_74500974_74501106_74504574_74504785_74504943
95127	chr16	-	3922	21	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-6	-169	combination_of_known_junctions	FALSE	canonical	3	21	junction_18	400.51053669036	37	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGTTTAGCACTACAC	NA	False	NA	NA	False	NA	NA	NA	16176829	16130278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16160560_16160600_16163861_16164010_16176627
95128	chr9	+	4265	27	NNC	ENSMUSG00000002820.7	novel	5951	10	NA	NA	4	10185	intron_retention	FALSE	non_canonical	0	0	junction_10	233.191860464687	312	25	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGAGACCTAGCGCGCA	8641	False	NA	NA	False	NA	NA	NA	21176595	21199253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184113_21184207_21184549_21185544_21186563_21186666_21186734_21186798_21187139_21187274_21187353_21187478_21187680_21187770_21187855_21187930_21190652_21190828_21191458_21191554_21191656_21191784_21192336_21192466_21192957_21193038_21193112_21193208_21193344_21193527_21196537_21196666_21197876_21197980_21198993_21199071_21199157
95129	chr5	+	315	1	Intergenic	novelGene_905	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	983	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAGGATTCAACCCGGCGG	NA	False	NA	NA	False	NA	NA	NA	146197788	146198103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
95130	chr16	-	564	1	Intergenic	novelGene_3764	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95131	chr1	+	4202	14	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-7095	1	intron_retention	FALSE	canonical	0	0	junction_1	98.3951699396653	5	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCACAAGTATACATGCT	NA	False	NA	NA	False	NA	NA	NA	132398007	132433394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132398126_132405044_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
95133	chr2	-	535	3	Genic_Genomic	ENSMUSG00000087701.5	novel	493	1	NA	NA	-38	210	multi-exon	FALSE	non_canonical	0	0	junction_1	0	621	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAGAAGAAGAGCTG	NA	False	NA	NA	False	NA	NA	NA	51761668	51760927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_51760944_51761090_51761325_51761383
95134	chr15	-	2758	3	ISM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	1	1942	1	680	intron_retention	FALSE	canonical	3	28682	junction_2	1223	2	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCTGGGCAGAAAGGCTAC	3572	False	NA	NA	False	NA	NA	NA	79967553	79963937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79964052_79964566_79964754_79965096
95135	chr15	-	2638	8	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-18713	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1831.85244704782	2	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCATGAGTCTCAGTGGT	NA	False	NA	NA	False	NA	NA	NA	36815886	36771015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772454_36772579_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793775_36815869
95136	chr1	-	2348	14	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	701.609738281953	7	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCTTTGTGCTTTAA	NA	False	NA	NA	False	NA	NA	NA	20890505	20873229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20888051_20888130_20890354
95137	chrM	-	2105	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATGGTTAAAAGCTGTT	9986	False	NA	-1	True	NA	NA	NA	3710	1605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1600_3700
95138	chr2	-	1264	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-191	-73	191	mono-exon	FALSE	NA	NA	NA	NA	NA	27	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	28824694	28823430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
95139	chrX	+	2796	7	NIC	ENSMUSG00000067768.13	novel	1744	9	NA	NA	-1	379	intron_retention	FALSE	canonical	3	74	junction_1	80.3736067790084	14	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTATTATTAGCAGCTTT	NA	False	NA	NA	False	NA	NA	NA	72257953	72266438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_72258088_72258379_72258962_72259646_72259716_72261328_72262392_72263579_72263679_72265472_72265569_72265685
95140	chr15	-	8207	10	NNC	ENSMUSG00000053749.13	novel	2752	2	NA	NA	-145594	-475	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	168	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAGAAGTCGGCGAGTCC	NA	False	NA	NA	False	NA	NA	NA	55122667	54975733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_54976015_55012735_55012915_55015182_55015308_55044260_55044439_55072125_55072310_55075584_55075720_55078872_55078954_55081563_55081668_55115400_55118667_55118993
95141	chr17	+	716	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	457	676	457	-676	mono-exon	FALSE	NA	NA	NA	NA	NA	37	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGTATGGTTGCAAAGCT	NA	False	NA	NA	False	NA	NA	NA	40157700	40158416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157700_40158400
95142	chr11	-	2824	26	NNC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	-24	84120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	52.1530977028211	149	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCCGCACATGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	26543646	26337201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_26337309_26347743_26347803_26349646_26349708_26357545_26357647_26372405_26372503_26384429_26384499_26409683_26409835_26418332_26418417_26418669_26418717_26418799_26418883_26419651_26419767_26420874_26420946_26421321_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26540337_26540420_26541586_26541728_26543589
95143	chr2	+	3866	18	Antisense	novelGene_ENSMUSG00000027184.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGACGATTTGCTGCCGC	NA	False	NA	NA	False	NA	NA	NA	103595357	103627237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103597207_103598748_103598814_103599146_103599251_103599779_103599977_103602044_103602195_103603014_103603163_103603317_103603428_103604076_103604141_103605761_103605870_103605953_103606109_103606276_103606366_103606449_103606508_103608310_103608446_103609508_103609590_103609675_103609917_103613300_103613391_103613490_103613550_103627074
95144	chr1	+	4113	1	Intergenic	novelGene_449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	133907791	133911904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_133907800_133911900
95145	chr4	+	3141	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-40287	-1720	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	273.858235832581	334	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTACGGAATCTTAATA	NA	False	NA	NA	False	NA	NA	NA	146493192	146553029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146493332_146502756_146502850_146508052_146508139_146533486_146533533_146547961_146548020_146548860_146548988_146550437
95146	chr9	-	1706	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1034	4	-2	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	213137	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8134	False	NA	-46	True	NA	NA	NA	78387972	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
95148	chr2	+	2034	11	NIC	ENSMUSG00000027282.18	novel	2377	13	NA	NA	65	-1	intron_retention	FALSE	canonical	3	2084	junction_3	227.389445665361	12	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGATTGGTGTCTGCCT	293	False	NA	NA	False	NA	NA	NA	90677695	90695734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90691794_90693933_90694010_90695527
95149	chr3	-	2706	4	ISM	ENSMUSG00000028136.16	ENSMUST00000196251.2	599	6	15560	-2309	15560	485	3prime_fragment	FALSE	canonical	3	101	junction_1	44.2292010127045	5	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCCCTACCCTTCCTTTC	7117	False	NA	NA	False	NA	NA	NA	94410838	94406134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_94408579_94409476_94409537_94410162_94410292_94410765
95150	chr2	-	3687	4	FSM	ENSMUSG00000078905.9	ENSMUST00000072895.10	625	4	-35	-3027	-17	3027	multi-exon	FALSE	canonical	3	40	junction_2	18.263503375737	242	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CTTTATAAAAAAGGGAAAAA	NA	False	NA	NA	False	NA	NA	NA	174909591	174900314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_174903715_174905392_174905454_174905660_174905788_174909492
95151	chr17	+	1792	3	NNC	ENSMUSG00000023067.15	novel	1913	3	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	653	5	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4650	False	NA	NA	False	NA	NA	NA	29312745	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29312836_29317370_29317812_29318435
95152	chr17	-	2245	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-6	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	3473.43221583849	228	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45884187	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882062_45882701_45882838_45884092
95154	chr8	+	2991	10	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	30	-127	intron_retention	FALSE	non_canonical	0	0	junction_3	325.111187058547	7	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGAGTGTATGTGTGT	5107	False	NA	NA	False	NA	NA	NA	107330040	107396751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375693_107387584_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
95156	chr13	-	5355	6	NNC	ENSMUSG00000113204.2	novel	1989	6	NA	NA	32	29210	intron_retention	TRUE	non_canonical	0	0	junction_1	37.2934310569569	179	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTCCTGCTGTGATCAT	4858	False	NA	NA	False	NA	NA	NA	74765789	74698266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74698276_74751390_74755855_74757240_74757302_74758318_74758446_74760842_74761068_74765320
95157	chr10	-	2080	1	Intergenic	novelGene_3479	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCCTCTTGCAATTTG	NA	False	NA	NA	False	NA	NA	NA	74552716	74550636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74550600_74552700
95158	chrX	+	888	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	17	4267	17	-4267	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	33	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGGTGTTTTGAATAAACC	5364	False	NA	NA	False	NA	NA	NA	158155190	158168657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
95159	chr9	+	4576	15	Antisense	novelGene_ENSMUSG00002076266.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.257539376818856	201	33	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACACTGTGGCTACAGGAA	194	False	NA	NA	False	NA	NA	NA	108480140	108531582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108482355_108482533_108482619_108484489_108484558_108485109_108485252_108485800_108485968_108487095_108487147_108488831_108488950_108490924_108491037_108492225_108492348_108493878_108494026_108494568_108494631_108497253_108497328_108521226_108521568_108522131_108522194_108530771
95160	chr14	+	7367	5	Intergenic	novelGene_565	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	84	173	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTTGACTTGGCTCCA	NA	False	NA	NA	False	NA	NA	NA	50052229	50269811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_50056756_50057477_50057632_50212519_50212600_50231837_50232490_50267856
95161	chr15	-	3160	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	20.5	5	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700670_22702717_22703973_22704041
95162	chr2	-	685	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11337	190	multi-exon	FALSE	non_canonical	0	0	junction_1	0	219	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	11426178	11413651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414099_11425940
95163	chr7	-	1395	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6691.12874913493	39644	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394959_126395140_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
95164	chr14	-	3252	5	FSM	ENSMUSG00000022124.16	ENSMUST00000145693.8	3352	5	100	0	76	0	multi-exon	FALSE	canonical	3	110	junction_4	32.5451609306207	131	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTATTTTTATAAC	NA	False	NA	NA	False	NA	NA	NA	103336335	103318469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336204
95166	chr11	-	3878	21	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	9	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	270.051920933735	27	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAAGGTTTGACTTTCGT	9146	False	NA	NA	False	NA	NA	NA	102207521	102195398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102195835_102196190_102196562_102196868_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
95167	chr4	+	5626	23	Intergenic	novelGene_2150	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	75	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTCACCGCAGCAGCAACA	3545	False	NA	NA	False	NA	NA	NA	148089409	148123162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_148091319_148093137_148093266_148093356_148093464_148095110_148095587_148097073_148097260_148098131_148098237_148098320_148098484_148098588_148098742_148098956_148099080_148101302_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105984_148107822_148107951_148108565_148108686_148109701_148110176_148110386_148111060_148113009_148113062_148113838_148113912_148122373_148122435_148123140
95168	chr8	+	3830	26	FSM	ENSMUSG00000031862.12	ENSMUST00000034326.7	3915	26	85	0	-2	0	multi-exon	TRUE	canonical	3	203	junction_10	47.3625337160081	148	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGCTGCCACTTATATCT	9249	False	NA	NA	False	NA	NA	NA	70243897	70260399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70244292_70246398_70246489_70246579_70246771_70249228_70249302_70249479_70249636_70249731_70249802_70249874_70249982_70250356_70250487_70250590_70250647_70251036_70251164_70251233_70251372_70251461_70251583_70251970_70252129_70252411_70252588_70252661_70252773_70253551_70253678_70254683_70254793_70256109_70256310_70256389_70256487_70257869_70258028_70258097_70258213_70258295_70258493_70259410_70259554_70259646_70259759_70259841_70259986_70260068
95169	chr15	-	1881	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAACTTTAAACCCTTCAG	9795	False	NA	NA	False	NA	NA	NA	22705095	22703031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22703232_22703414
95170	chr12	+	1708	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-61	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1908.10962997413	52	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTTGAACTTTCATG	NA	False	NA	NA	False	NA	NA	NA	24758281	24764084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763419_24763800
95171	chr2	-	4339	5	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5501	2864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.2217570394662	2	32	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	177021601	177003448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177005497_177005644_177007703_177008856_177008918_177009124_177009225_177021529
95172	chrM	+	1489	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-111	0	-111	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	74	False	NA	NA	False	NA	NA	NA	10055	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10100_11500
95173	chr14	-	3372	30	NNC	ENSMUSG00000002319.17	novel	3846	30	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	96.0909819562558	3	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTATAAGGAAGCAGCTGT	9849	False	NA	NA	False	NA	NA	NA	55873037	55863179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55863452_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
95174	chr4	-	2092	10	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	70	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	494.043632800901	19	11	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCTGAGGCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	137523625	137469057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471052_137476914_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
95176	chr1	-	6341	36	NNC	ENSMUSG00000026193.16	novel	7965	45	NA	NA	881	1	intron_retention	FALSE	canonical	0	0	junction_35	634.365345065766	1	63	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGACGTCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71679566	71624680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636832_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677740_71679450
95177	chr4	-	2729	6	FSM	ENSMUSG00000042677.8	ENSMUST00000036188.8	2755	6	26	0	26	0	multi-exon	FALSE	canonical	2	13	junction_5	0.748331477354788	29	18	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGCCAGTCGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	125021607	125012215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_125013938_125014118_125014226_125014664_125014900_125016046_125016187_125020398_125020876_125021559
95178	chr13	-	10390	3	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	29	64	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	23513990	23354443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23356250_23357787_23361382_23509000
95179	chr6	-	2633	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	0	-37	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_13	315.977154211299	6	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTCATTAAATAAAGCAAT	3054	False	NA	NA	False	NA	NA	NA	71885728	71857663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865548_71865648_71866324_71866350_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71872023_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
95181	chr12	-	2015	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-11	-4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	63.4738811933696	1	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAGAAAAAGAAAAC	NA	False	NA	NA	False	NA	NA	NA	84664155	84649430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
95182	SIRV5	+	4328	17	NIC	SIRV5A	novel	2474	18	NA	NA	0	0	intron_retention	FALSE	canonical	3	1532	junction_16	2918.0582986594	510	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
95183	chrUn_MU069435v1	+	468	1	Intergenic	novelGene_4724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAACCTGGCGCTAAACC	NA	False	NA	NA	False	NA	NA	NA	0	468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_500
95184	SIRV1	-	1320	7	NNC	SIRV1A	novel	1363	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2327.59222278207	5	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7599_7641_7815_10282_10367_10647
95185	chr12	-	5236	21	NNC	ENSMUSG00000020949.10	novel	1233	6	NA	NA	15	26088	intron_retention	FALSE	non_canonical	0	0	junction_1	4487.21466056617	36	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGCGCACGCGCCGGCG	NA	False	NA	NA	False	NA	NA	NA	65120721	65083109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65083241_65089232_65089580_65090003_65090130_65090314_65090386_65090488_65090651_65090778_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102093_65102409_65102538_65103023_65103290_65104498_65104688_65106644_65106718_65107922_65108037_65108194_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
95186	chr11	-	1237	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-162	-73	162	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTCGCTGCACCCAAAA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
95187	chr10	+	4370	28	NNC	ENSMUSG00000039994.16	novel	4341	29	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	113.384895073052	1	118	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAGAGACTTTTGT	6615	False	NA	NA	False	NA	NA	NA	128067957	128088799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083114_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085554_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
95188	chr11	-	1815	10	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	0	2	intron_retention	FALSE	canonical	3	295	junction_9	740.46868707813	15	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAACCTTGTTCACTTGG	9585	False	NA	NA	False	NA	NA	NA	5828212	5822185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828187
95190	chr4	+	2322	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	3044	5	NA	NA	-12	-5	multi-exon	FALSE	non_canonical	0	0	junction_3	19.8179211826064	2	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	5007	False	NA	NA	False	NA	NA	NA	145241441	145351906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145241589_145343687_145343746_145347127_145347157_145348809_145349454_145350462
95191	chr8	-	2464	5	Intergenic	novelGene_1589	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	46	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAGGCACATTGGTATG	NA	False	NA	NA	False	NA	NA	NA	20171054	20036144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_20036158_20039781_20039963_20163253_20163407_20167035_20167155_20169056
95192	chrM	+	675	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	12	-3	12	3	mono-exon	FALSE	NA	NA	NA	NA	NA	218	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGAAGCTAAGAGCGT	-14	True	NA	NA	False	NA	NA	NA	7024	7699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7000_7700
95193	chr9	-	2416	10	NIC	ENSMUSG00000039048.16	novel	2289	11	NA	NA	-19	-19	intron_retention	FALSE	canonical	3	179	junction_8	19.4218916829234	309	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCTTAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	35122316	35115522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
95195	chr3	+	6267	24	NNC	ENSMUSG00000054199.19	novel	4083	6	NA	NA	47	1891	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	114.137846550226	19	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGAGTTTGTGTTAATTA	NA	False	NA	NA	False	NA	NA	NA	88742607	88809697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88743050_88744296_88744828_88761908_88762103_88762932_88763008_88763121_88763173_88763725_88763777_88764434_88764534_88765693_88765814_88766195_88766367_88770726_88770924_88776056_88776159_88777109_88777160_88787369_88787482_88794212_88794412_88794865_88794953_88796977_88797147_88798119_88798265_88799824_88799976_88801748_88801866_88802126_88803879_88805411_88805668_88806196_88806382_88807236_88807435_88808884
95197	chr17	-	2795	8	Antisense	novelGene_ENSMUSG00002076233.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAATGAAAATTCGGATGT	NA	False	NA	NA	False	NA	NA	NA	47634337	47507194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_47507413_47541153_47541240_47597664_47597781_47624716_47626425_47627537_47627585_47628691_47628846_47630275_47630603_47634198
95198	chrM	+	961	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1	-3	-1	3	mono-exon	FALSE	NA	NA	NA	NA	NA	519	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	108	True	NA	NA	NA	2749	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
95199	chr4	+	6232	10	FSM	ENSMUSG00000028414.18	ENSMUST00000221657.2	6241	10	6	3	6	-3	multi-exon	FALSE	canonical	1	1	junction_1	14.3819159423506	137	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTTGTGTTTGTTTT	23	True	NA	NA	False	NA	NA	NA	53714193	53765782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_53714547_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
95200	chr19	+	2518	2	Intergenic	novelGene_1226	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3428	junction_1	0	19	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTATGAAAGGCCATGGCC	1290	False	NA	NA	False	NA	NA	NA	22699948	22702680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763
95201	chr6	-	3847	14	NNC	ENSMUSG00000040669.15	novel	3289	15	NA	NA	-8	0	intron_retention	FALSE	non_canonical	0	0	junction_11	300.07854987432	1	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACACCTACCCTAATCCA	9099	False	NA	NA	False	NA	NA	NA	122316594	122295261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122310400_122311028_122311081_122311973_122312043_122313816_122313975_122316556
95202	chr2	-	5024	5	Intergenic	novelGene_2847	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	159	52	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTTGCAAGCTTGACCTG	NA	False	NA	NA	False	NA	NA	NA	177294294	177156537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_177160634_177160733_177161343_177184344_177184360_177289549_177289799_177294239
95204	SIRV6	+	1487	7	NNC	SIRV6A	novel	1528	10	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	12293.2473288749	28	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACCGGGAGTATACTTA	NA	False	NA	NA	False	NA	NA	NA	1087	11827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1741_1845_2027_2470_2621_10839_11109_11205
95205	chr17	+	2640	5	Intergenic	novelGene_25	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_4	56.9797113014799	1	9	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCTTCTAAGGGATGCA	NA	False	NA	NA	False	NA	NA	NA	17225377	17261646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225539_17257537_17257665_17257906_17257968_17259258_17259309_17259405
95206	chr15	-	6853	34	NNC	ENSMUSG00000036606.18	novel	6394	36	NA	NA	2393	-8	intron_retention	FALSE	non_canonical	0	0	junction_4	91.6934346090996	3	174	19	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTCTCTGGTTGACTGGG	NA	False	NA	NA	False	NA	NA	NA	89052498	89039759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89040589_89040700_89040776_89041195_89041272_89041388_89041421_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049912_89050033_89050108_89050698_89050786_89050970_89051143
95207	chr7	+	2595	3	ISM	ENSMUSG00000059851.16	ENSMUST00000160480.2	1270	7	2808	-607	-1150	-9	3prime_fragment	FALSE	canonical	3	655	junction_1	29.5	3	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCCTTAGGAGGTTTTTT	5126	False	NA	NA	False	NA	NA	NA	4747656	4750504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4748938_4749075_4749261_4749375
95208	chr5	-	3022	16	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	-6836	-1974	at_least_one_novel_splicesite	FALSE	non_canonical	1	1	junction_14	200.297401103681	3	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAGAATTGGGTGATTAT	NA	False	NA	NA	False	NA	NA	NA	27977571	27947051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_27947498_27949108_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970682_27971289_27977001
95209	chr16	+	5096	31	NNC	ENSMUSG00000025616.15	novel	3205	18	NA	NA	-2	12380	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	114.2142674489	232	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCCGGTCGCCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	87251870	87292785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994_87280954_87281691_87281814_87282469_87282633_87282721_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592_87290674_87291223_87291316_87292616
95211	chr9	+	4824	21	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	37	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.210668519569	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGTTTGTATTGAAATGG	NA	False	NA	NA	False	NA	NA	NA	109760968	109912237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109792428_109792476_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802_109911156_109911242
95212	chr16	-	564	1	Intergenic	novelGene_3765	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95213	chr18	+	1741	10	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26641	-140	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	450.476154121502	10	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGGATTGGAAAAGAGC	6444	False	NA	-78	True	NA	NA	NA	77126262	77234493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185262_77214560_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
95214	chr1	-	1111	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGGTGGGCGGCGAAGGT	9068	False	NA	NA	False	NA	NA	NA	86458411	86454531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457279_86457454_86457525_86457684
95215	chr11	-	1612	4	ISM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	14719	12	14719	-10	3prime_fragment	FALSE	canonical	3	2258	junction_1	47.7935374524864	2	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACTATTTGATGGGCTT	NA	False	NA	NA	False	NA	NA	NA	59104269	59102249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165
95216	chr1	+	810	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	299	830	-5	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	73	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
95217	chr19	+	3654	11	Fusion	ENSMUSG00000034445.9_ENSMUSG00000117955.2	novel	2634	9	NA	NA	-3032	-139	intron_retention	FALSE	non_canonical	0	0	junction_1	42.3150091575082	319	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCACCCTGCAGGTTGAG	NA	False	NA	NA	False	NA	NA	NA	10547843	10565773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_+_10548638_10548896_10548969_10552200_10552375_10552605_10552878_10554449_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185
95218	chr15	-	3662	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700812_22702333_22704588_22704680
95219	chrX	-	3149	4	NNC	ENSMUSG00000085396.8	novel	3850	12	NA	NA	-2909	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	48.9648399931579	2	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGTTTTCATTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	49661985	49652023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49653845_49656416_49656571_49658153_49659234_49661891
95220	chr5	-	4377	6	ISM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	19934	3	-697	-3	intron_retention	FALSE	canonical	3	980	junction_2	70.0097136117553	4	84	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGGTGTCAATTTCA	NA	False	NA	NA	False	NA	NA	NA	110938029	110932356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975
95221	chr19	-	1724	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	22705275	22699838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773_22700895_22704393
95222	chr9	-	2792	1	ISM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	106562	4	23234	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	5	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGTGTCTACTTAGA	NA	False	NA	NA	False	NA	NA	NA	82751007	82748215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_82748200_82751000
95223	chr5	-	1015	6	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGAGAGCGGCTGCGGC	NA	False	NA	NA	False	NA	NA	NA	129100229	129097585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129097637_129097745_129097831_129097927_129098054_129099064_129099253_129099436_129099608_129099835
95224	chr17	-	4868	4	Antisense	novelGene_ENSMUSG00002076104.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	21	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCGGTTTCAATTTTAAAGT	NA	False	NA	NA	False	NA	NA	NA	95097751	95057551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_95057659_95062636_95062732_95063859_95063965_95093190
95225	chr13	+	832	3	Intergenic	novelGene_1482	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_2	42	1	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAGGACAGTAGCCTCGA	NA	False	NA	NA	False	NA	NA	NA	80849204	80852520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_80849433_80851118_80851353_80852150
95227	chr14	-	6851	21	Fusion	ENSMUSG00000022119.16_ENSMUSG00000091509.8	novel	3634	21	NA	NA	16985	0	multi-exon	FALSE	canonical	3	71	junction_2	47.1429740258291	234	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTTGTTAATGTTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	105397311	105344186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_105347239_105350904_105350964_105351555_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727_105389989_105390850_105391069_105392297_105392387_105397273
95228	chr7	+	1202	5	NIC	ENSMUSG00000074165.11	novel	3177	6	NA	NA	16	-1	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	14.5344418537486	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACAATGTGGTAAGTCCT	NA	False	NA	NA	False	NA	NA	NA	41283016	41298420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_41283119_41292756_41292857_41296906_41297042_41297242_41297304_41297616
95229	chrM	+	1381	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	201	0	-201	mono-exon	FALSE	NA	NA	NA	NA	NA	14	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCGTTTGTTCAACGATTAA	-3	True	NA	22	True	NA	NA	NA	1093	2474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2500
95230	chr5	+	2102	1	Antisense	novelGene_ENSMUSG00000100801.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2696	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCGTTCAATGAGACCAATA	NA	False	NA	NA	False	NA	NA	NA	5831518	5833620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_5831500_5833600
95231	chr5	+	387	1	Intergenic	novelGene_934	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
95232	chr16	+	6761	11	FSM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	-32	-3249	-32	1366	multi-exon	FALSE	canonical	0	0	junction_8	21.466252583998	92	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTGAACCATTTCTTT	NA	False	NA	NA	False	NA	NA	NA	12927515	12969847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948599_12950721_12950815_12962264_12962378_12965389
95234	chr7	+	5973	20	Antisense	novelGene_ENSMUSG00000035401.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	185	87	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTTTCCCAGCCAA	NA	False	NA	NA	False	NA	NA	NA	98238163	98306073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98240091_98242536_98243016_98243956_98244524_98246242_98246391_98249876_98250035_98251789_98251957_98259875_98260071_98262185_98262364_98264681_98264825_98268508_98268673_98270590_98270746_98275670_98275925_98279334_98279613_98286465_98286727_98290698_98290876_98294373_98294419_98295655_98295731_98297011_98297112_98303950_98304059_98305679
95235	chr7	+	5860	32	NNC	ENSMUSG00000013928.14	novel	1182	4	NA	NA	-39952	-1525	intron_retention	FALSE	non_canonical	0	0	junction_1	0	14	77	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGCCTGTAGCCAGCACC	NA	False	NA	NA	False	NA	NA	NA	29939566	29979795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29939912_29940003_29941255_29941439_29941488_29941598_29941698_29941820_29941938_29942170_29942303_29942467_29942567_29942855_29942950_29943248_29943966_29944116_29944314_29944720_29944925_29947035_29947094_29949203_29949337_29950099_29950226_29950816_29950881_29950957_29951068_29951738_29951819_29953411_29953529_29953608_29953682_29955232_29955358_29957482_29957572_29960711_29960894_29962038_29962180_29964519_29964692_29967203_29967374_29969579_29969752_29970096_29970242_29971031_29971203_29971751_29971809_29973371_29973434_29974524_29974612_29979572
95236	chr12	+	762	4	NNC	ENSMUSG00000079179.10	novel	812	4	NA	NA	-11	1	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	79.4411032708439	25	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTCTCAGGACAAATTTG	NA	False	NA	NA	False	NA	NA	NA	3285514	3288274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288063
95237	chrX	-	4379	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-74	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_8	138.734807956675	620	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	59224523	59101315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59126519_59126598_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
95238	chr16	-	564	1	Intergenic	novelGene_3766	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95239	chr4	+	2584	9	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	67	2577	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	119.564574603015	130	49	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	147576940	147600520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578938_147592042_147592098_147595209_147595337_147596801_147596904_147596948_147597042_147597713_147598714_147599384_147599761_147599862
95240	chr11	+	974	1	Antisense	novelGene_ENSMUSG00000078965.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	71	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGATGGGCTTCCCGTTGAT	NA	False	NA	NA	False	NA	NA	NA	20284821	20285795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20284800_20285800
95241	chr2	+	3032	17	Antisense	novelGene_ENSMUSG00000006800.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGGGCGGCACGTATGAG	NA	False	NA	NA	False	NA	NA	NA	165915835	165936495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_165916751_165917416_165917468_165917691_165917730_165919441_165919568_165920963_165921102_165921381_165921557_165922675_165922812_165923206_165923297_165923389_165923629_165924493_165924707_165925777_165925906_165926305_165926361_165927600_165927731_165928904_165929082_165931117_165931272_165935374_165935539_165936392
95242	chr13	-	2706	5	NNC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	884	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	76.6893082508898	537	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66950624	66939249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66941596_66942701_66942763_66942962_66943090_66945933_66946010_66950528
95243	chr19	-	4667	13	NNC	ENSMUSG00000025195.10	novel	3901	14	NA	NA	452	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	21.190930974253	80	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	1109	False	NA	NA	False	NA	NA	NA	43878678	43835260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857454_43858600_43858749_43862596_43862697_43863265_43863460_43877748
95244	chr4	+	2579	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-280	774	multi-exon	FALSE	canonical	2	12	junction_1	36.1509182302316	110	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145136534	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136755_145138756_145138851_145160315_145160385_145176036
95245	chr14	-	8211	23	FSM	ENSMUSG00000021952.17	ENSMUST00000174545.9	8680	23	468	1	2	-1	multi-exon	FALSE	canonical	2	168	junction_17	47.2351467755642	261	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGGTTTGACCATGT	NA	False	NA	NA	False	NA	NA	NA	57902419	57814978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57885875_57885982_57902344
95246	chr11	-	3986	21	Antisense	novelGene_ENSMUSG00000020456.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.435889894354067	1	121	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCGGCGTGTGGCGTCAA	NA	False	NA	NA	False	NA	NA	NA	6306570	6241626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_6241699_6246955_6247198_6263785_6263976_6266971_6267080_6284531_6284647_6288555_6288709_6289104_6289321_6290441_6290621_6292492_6292622_6296512_6296692_6297094_6297249_6297826_6297929_6298230_6298362_6298655_6298803_6299093_6299224_6299309_6299493_6299840_6299912_6300608_6300722_6304892_6305090_6305287_6305443_6305550
95247	chr11	+	1997	3	NNC	ENSMUSG00000033983.15	novel	3120	11	NA	NA	-710	-17626	intron_retention	FALSE	non_canonical	0	0	junction_1	0	8	46	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTGGGTACCTAGGCAC	8721	False	NA	NA	False	NA	NA	NA	88860367	88864154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_88861463_88861672_88861820_88863399
95248	chr7	-	3605	21	NNC	ENSMUSG00000031024.14	novel	4612	20	NA	NA	-35	-370	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_18	54.9562325855767	1	119	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTCCCAAAGGGCCAGGT	NA	False	NA	NA	False	NA	NA	NA	109215795	109123635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_109123888_109124469_109124557_109124745_109124986_109125432_109125545_109126550_109126593_109126820_109126999_109130288_109130438_109133840_109133982_109134500_109134579_109137482_109137553_109138140_109138251_109138868_109139054_109139598_109139644_109140542_109140640_109141526_109141743_109144283_109144436_109152181_109152319_109155417_109155500_109155832_109156669_109169213_109169319_109215504
95249	chrUn_JH584304v1	+	6463	2	Intergenic	novelGene_4699	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	21	123	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGATGTTTCTCATTTTC	NA	False	NA	NA	False	NA	NA	NA	103373	111239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_104160_105562
95250	chrM	+	1467	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	149	-71	149	71	mono-exon	FALSE	NA	NA	NA	NA	NA	55	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	70	False	NA	-74	True	NA	NA	NA	5476	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5500_6900
95251	chr11	-	1274	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	131	228	1	-4	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	12	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113075	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
95252	chr7	-	4624	8	NIC	ENSMUSG00000030541.17	novel	1745	11	NA	NA	-12	981	intron_retention	FALSE	canonical	3	1692	junction_3	173.995073821892	8	92	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTGTCAGATCTCATTAC	NA	False	NA	NA	False	NA	NA	NA	79765064	79743612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79744952_79745368_79745462_79745546_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
95253	chr7	-	873	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	73	3	5	2	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	89	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTACCAAGGCTGTGAG	7008	False	NA	NA	False	NA	NA	NA	12768661	12765943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
95254	chr4	+	3620	18	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.235294117647059	736	17	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCGCCGGGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	135047799	135080508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054535_135056314_135056356_135056682_135056831_135059034_135059122_135059471_135059550_135065114_135065392_135067814_135067934_135068157_135068349_135069682_135069797_135071176_135071291_135071809_135071981_135074045_135074172_135074428_135074515_135080406
95255	chr4	+	1278	9	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5224.43932248954	5	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150321696	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325518_150329683_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
95256	chr11	-	4777	7	NNC	ENSMUSG00000018481.10	novel	6463	13	NA	NA	33618	-417	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.685839488063	1	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTTCAATTTAGTTTTA	1786	False	NA	NA	False	NA	NA	NA	85092338	85078504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_85080832_85080940_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241
95258	chr1	-	8304	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9468	-42	intron_retention	FALSE	canonical	3	57	junction_41	313.908022009593	6	36	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTGGGCTGTGTGTATC	NA	False	NA	NA	False	NA	NA	NA	84827705	84702026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84773410_84773537_84792543_84792691_84822070_84822113_84827643
95260	chrM	+	1567	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-280	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	9	False	NA	NA	False	NA	NA	NA	9886	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_10156_10246
95261	chr17	+	2375	5	Intergenic	novelGene_28	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	56.9797113014799	2	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17225410	17261650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225539_17257537_17257665_17257906_17257968_17259258_17261121_17261453
95262	chr19	+	784	4	NNC	ENSMUSG00000024661.8	novel	929	4	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2724.49448929929	2	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	5002	False	NA	NA	False	NA	NA	NA	9960142	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9960348_9961544_9961692_9961930_9962050_9962144
95263	chr16	-	6534	5	NNC	ENSMUSG00000116673.2	novel	1556	5	NA	NA	2	3585	intron_retention	TRUE	canonical	0	0	junction_1	26.6211851727154	117	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCAGGAATTCAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	97883648	97849744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_97852213_97864546_97867866_97868954_97869016_97869203_97869331_97883089
95264	chr13	-	1036	1	Antisense	novelGene_ENSMUSG00000021488.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	23	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTTTAGCAGGTGGCCT	NA	False	NA	NA	False	NA	NA	NA	55461475	55460439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55460400_55461500
95265	chr15	+	4558	1	Antisense	novelGene_ENSMUSG00000022565.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGATGTCTTGCCATCCTT	NA	False	NA	NA	False	NA	NA	NA	76055442	76060000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_76055400_76060000
95266	chr1	-	3643	8	NIC	ENSMUSG00000037351.10	novel	3248	11	NA	NA	-2	-4	intron_retention	FALSE	canonical	3	484	junction_1	35.8164253734318	163	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCCTTATGAGTAAATATA	NA	False	NA	NA	False	NA	NA	NA	36749002	36737198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_36739260_36739417_36739679_36740214_36740390_36740501_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
95268	chr11	-	6688	33	Antisense	novelGene_ENSMUSG00000098497.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	156	13	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGCAAGACAAGCCCAGC	NA	False	NA	NA	False	NA	NA	NA	107578002	107437677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_107437877_107440170_107440226_107446342_107446403_107465765_107465991_107468687_107468725_107483530_107483654_107485961_107486020_107489973_107490026_107491099_107491176_107493133_107493334_107493760_107493868_107494889_107495188_107504674_107504943_107509806_107510140_107510906_107511039_107517358_107517538_107518175_107518274_107522989_107523174_107525798_107525923_107526989_107527138_107528605_107528757_107536878_107537058_107539935_107540165_107546867_107547072_107551917_107551972_107552666_107552859_107554433_107554641_107556823_107556910_107560864_107561497_107561871_107562106_107563352_107563870_107576114_107576367_107577207
95269	chr6	+	4478	13	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	82	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGACCCTGTTACTTGC	517	False	NA	63	True	NA	NA	NA	122294696	122315537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296016_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298829_122299431_122299965_122300777_122302418_122302908_122310247_122310400_122311028_122311112_122311933_122312042_122313815_122313972_122315233
95271	chr8	+	6714	24	NNC	ENSMUSG00000031731.17	novel	6899	24	NA	NA	18	1	intron_retention	FALSE	canonical	0	0	junction_6	59.7914143712471	322	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAACTTTGCTGCCTTGCT	NA	False	NA	NA	False	NA	NA	NA	110505203	110590837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556312_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725_110586989_110587151
95273	chr7	+	398	2	NNC	ENSMUSG00000054715.12	novel	2087	2	NA	NA	6	-9201	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	28	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTCAGCCATGAGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	12631773	12632263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12631871_12631962
95274	chr14	-	776	6	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGGCCGACGCGGGCGCT	NA	False	NA	NA	False	NA	NA	NA	76085705	76082775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082897_76083056_76083129_76083640_76083835_76084135_76084240_76084682_76084801_76085538
95275	chr7	+	2790	10	ISM	ENSMUSG00000030494.14	ENSMUST00000085556.4	3046	16	36860	-2	-8092	-2	intron_retention	FALSE	canonical	3	94	junction_1	10.5981596352537	4	74	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTCTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	35070614	35091712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
95276	chr17	-	2492	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	74	83	-15	-83	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	3	101	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTACCTGCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	36149124	36144895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
95278	chrX	-	3333	11	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	5	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	340.985058323675	2	56	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTCTGAAACAAGCATTA	NA	False	NA	NA	False	NA	NA	NA	93256252	93232329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240018_93243350_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
95279	chr16	+	3878	7	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_1	669.403714759138	1	102	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926558_22927334_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22930343_22930566
95280	chr12	-	4042	1	Intergenic	novelGene_4319	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	74	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTACATTAGACCCTATCT	3588	False	NA	NA	False	NA	NA	NA	22153060	22149018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_22149000_22153100
95281	chr17	-	5299	9	NIC	ENSMUSG00000055660.10	novel	6640	9	NA	NA	-15	-1834	combination_of_known_junctions	FALSE	canonical	3	71	junction_6	15.2151240547029	163	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCTGGCCTAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	95057462	95031851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95056813
95282	chr12	-	1601	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2729.73509217825	24	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638491
95283	chr15	+	13555	62	NNC	ENSMUSG00000037646.11	novel	13757	62	NA	NA	-170	4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_32	13.7643819388507	191	43	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGCTGTGAGTTTTTTC	-44	True	NA	NA	False	NA	NA	NA	35371501	35931379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_35371924_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35572205_35572316_35576524_35576673_35597540_35597669_35607275_35607511_35617743_35617965_35623747_35623952_35639998_35640171_35640675_35640791_35642543_35642611_35646118_35646528_35652400_35652513_35668846_35669051_35671444_35671572_35674964_35675099_35709271_35709960_35745792_35745931_35770601_35771010_35792184_35792388_35793979_35794185_35794450_35794636_35834329_35834527_35840020_35840203_35841394_35841745_35846991_35847154_35869432_35869589_35875707_35875972_35876525_35876610_35876787_35876964_35877642_35877814_35878788_35878991_35879914_35880104_35883034_35883182_35884652_35884937_35887022_35887151_35887328_35887529_35905417_35905537_35910292_35911096_35914919_35915097_35917192_35917364_35923332_35923510_35925449_35925553_35926186_35926437_35930000
95284	chr10	+	2991	1	Intergenic	novelGene_3399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	78	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCTTCTCAGGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	14299399	14302390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_14299400_14302400
95285	chr6	-	2622	11	NIC	ENSMUSG00000001518.13	novel	2320	12	NA	NA	-3	-12	intron_retention	FALSE	canonical	3	237	junction_3	19.6265126805554	3	70	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAATCTGATGCAGCTC	NA	False	NA	NA	False	NA	NA	NA	128401884	128386418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
95286	chr14	-	5212	15	NNC	ENSMUSG00000013701.14	novel	1173	7	NA	NA	2833	20296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1895.61557499491	909	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGAGATTTCCTTCCGCGC	NA	False	NA	NA	False	NA	NA	NA	31920952	31881822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_31881966_31892702_31892858_31894257_31894400_31894562_31894651_31894843_31894955_31895357_31895446_31896344_31896489_31897893_31898910_31899186_31899329_31899777_31902628_31911143_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925
95287	chrM	-	904	1	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGATTAGAATGGGGACGA	1	True	NA	7	True	NA	NA	NA	3702	2798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2800_3700
95288	chr2	-	3662	25	NNC	ENSMUSG00000035000.9	novel	5268	26	NA	NA	-1	-1559	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	60.7721010323725	4	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGGGTTATGTCTTGA	NA	False	NA	NA	False	NA	NA	NA	62242576	62161975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62216753_62216867_62217408_62217505_62241558_62241644_62242129
95289	chr15	+	3906	28	NNC	ENSMUSG00000022369.14	novel	3144	22	NA	NA	-23314	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.7310088662755	3635	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	NA	NA	NA	55397489	55489819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55397734_55402425_55402547_55403517_55403606_55406719_55406781_55411537_55411636_55418719_55418840_55420653_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449761_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
95290	chr2	-	7968	27	NNC	ENSMUSG00000043909.17	novel	9621	28	NA	NA	12	-1542	intron_retention	TRUE	canonical	0	0	junction_9	45.3871739826372	171	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCTTCCTGCATCTCTGA	8084	False	NA	NA	False	NA	NA	NA	121101876	121026860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038980_121039561_121039834_121041750_121041904_121046147_121046653_121054185_121054244_121058125_121058330_121059068_121059189_121066053_121067351_121074374_121074578_121077981_121078077_121078644_121078772_121082348_121082516_121084082_121084213_121087002_121087162_121089624_121089750_121100384_121100470_121100699_121100791_121101004_121101190_121101752
95291	chr5	+	1001	7	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	-14	-1163	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_6	6829.04867500266	2	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAACAAGTGAATCATCC	531	False	NA	NA	False	NA	NA	NA	129097321	129100224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099071_129099255_129099438_129099591_129099837
95292	chr16	+	3336	7	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-3	intron_retention	FALSE	canonical	3	563	junction_3	558.150716403932	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATAGGTGGTCTGGCC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22929474_22929875_22930014_22930252_22930343_22930566
95293	chr11	-	7501	4	NNC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	7861	12311	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGAATATTCTTCACTC	8796	False	NA	-35	True	NA	NA	NA	94234151	94221809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94224874_94225251_94225732_94229163_94229346_94230376
95294	chr1	-	837	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	2	-161	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAATGACCCACCAAACTC	NA	False	NA	NA	False	NA	NA	NA	24653893	24653056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
95296	chr18	+	2230	10	NNC	ENSMUSG00000024576.15	novel	2323	10	NA	NA	-1	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	666.774287609596	8	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTGTAAGGAAGTGAAAT	466	False	NA	NA	False	NA	NA	NA	61688382	61721368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701421_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
95297	chr19	+	5142	7	NNC	ENSMUSG00000025036.8	novel	3205	12	NA	NA	17	-4	intron_retention	FALSE	canonical	0	0	junction_6	20.3360653902262	34	134	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACATGAAACACTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	46561822	46585330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46577489_46581616
95298	chr4	+	2968	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	-22	7	-22	-4	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	190	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146599354	146623845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
95299	chr9	-	3686	15	NIC	ENSMUSG00000042790.17	novel	3294	15	NA	NA	7	-24	combination_of_known_junctions	FALSE	canonical	1	1	junction_14	18.6340975589572	126	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTATGAGCTCATGGATGA	9093	False	NA	NA	False	NA	NA	NA	45818202	45774830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_45776297_45777863_45777960_45778244_45778350_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45818035
95300	chr11	-	814	1	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTCACGAAGATCTGCA	NA	False	NA	NA	False	NA	NA	NA	62444034	62443220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62443200_62444000
95301	chr7	+	3527	5	FSM	ENSMUSG00000033961.17	ENSMUST00000108535.8	2594	5	45	-978	0	34	multi-exon	FALSE	canonical	3	25	junction_1	5.2618912949623	45	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTAGAAACCTGAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	12711819	12718301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_12712146_12712924_12713306_12713377_12713574_12713811_12713907_12715772
95302	chr16	-	564	1	Intergenic	novelGene_3767	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	547	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95303	chr3	-	4017	8	NNC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	0	-42	intron_retention	FALSE	canonical	2	6	junction_6	286.583321217408	31	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATTTTGTTACAGTCTAT	NA	False	NA	NA	False	NA	NA	NA	10416374	10405056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411298_10412224_10412265_10413569_10413613_10413746_10416118_10416301
95304	chr7	-	1992	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	-481	0	301	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	204	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126398907	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
95305	chr16	-	1106	4	ISM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	4939	1823	4939	-1823	3prime_fragment	FALSE	canonical	3	1087	junction_1	69.1391511534689	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCCCTTTTGAAAGCTT	4737	False	NA	NA	False	NA	NA	NA	33782434	33776986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938
95307	chr14	-	6564	9	NIC	ENSMUSG00000022185.20	novel	4735	19	NA	NA	-10	-1197	intron_retention	FALSE	canonical	3	51	junction_6	35.6035022855898	92	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACTCCAAAGTACCTTT	2620	False	NA	NA	False	NA	NA	NA	54924398	54885209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916199_54916320_54916697_54916810_54922467_54922534_54923925
95308	chr11	+	3791	12	NIC	ENSMUSG00000020271.18	novel	3938	13	NA	NA	-35	-80	combination_of_known_splicesites	FALSE	canonical	3	198	junction_1	77.7587921206735	8	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTGACCTGGCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	32592830	32696709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_32592936_32661771_32661998_32670471_32670659_32672054_32672146_32681335_32681474_32683499_32683619_32685137_32685388_32688361_32688481_32689155_32689267_32690186_32690266_32692458_32692645_32694529
95309	chr4	-	3594	1	Antisense	novelGene_ENSMUSG00000058186.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	55	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGATAATACACTTAATAA	NA	False	NA	NA	False	NA	NA	NA	145425181	145421587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145421600_145425200
95310	chr5	-	1428	6	NNC	ENSMUSG00000066551.13	novel	2838	5	NA	NA	-4	158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3231.3420988809	3	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAACATTTTCATCCATAGT	6760	False	NA	NA	False	NA	NA	NA	148989854	148984879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985595_148985640_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
95311	chr4	-	1159	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	34	-191	34	191	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740872	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91740900
95313	chr5	-	163	1	Intergenic	novelGene_899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	499	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTCATTTAAAATTTT	NA	False	NA	NA	False	NA	NA	NA	146197951	146197788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_146197800_146198000
95314	chrUn_JH584304v1	-	2577	6	Intergenic	novelGene_4664	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_5	361.018226686687	9	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	59725	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55702_56985_57152_59591
95315	chr9	+	3498	12	NNC	ENSMUSG00000009741.16	novel	3997	14	NA	NA	-13015	0	intron_retention	FALSE	canonical	3	25	junction_7	151.969712075893	28	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTCACTCATTTCAAATC	NA	False	NA	NA	False	NA	NA	NA	113785277	113806270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_113785882_113787665_113787819_113787896_113788008_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113798651_113798767_113799209_113799329_113801818_113801962_113802586_113802639_113804413
95316	chr9	+	4919	21	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	124.423108786109	267	94	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAACATAAGTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	56979304	57035645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56979348_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017867_57018437_57020829_57021000_57024665_57024840_57025353_57025449_57026376_57026472_57032452_57032733_57034464
95317	chr4	-	4903	36	NIC	ENSMUSG00000028431.12	novel	6160	37	NA	NA	43	232	combination_of_known_splicesites	TRUE	canonical	3	18	junction_5	63.153586677275	14	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTACCTTGTTATGTGCTA	5	True	NA	NA	False	NA	NA	NA	56802288	56750779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769216_56770980_56771079_56771432_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56775016_56775091_56775424_56775541_56776689_56776796_56776884_56776939_56778958_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
95318	chr4	-	645	6	NNC	ENSMUSG00000047675.16	novel	860	6	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5596.94053568555	3	22	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	NA	False	NA	NA	NA	117013279	117011030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117011185_117011495_117011626_117011834_117012000_117012244_117012305_117012763_117012875_117013254
95319	chr1	-	3327	14	NIC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	171	864	combination_of_known_junctions	FALSE	canonical	3	382	junction_13	1964.96669047456	17	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGTTTGGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	86286520	86277352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286288
95320	chr9	-	1165	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	90	-98	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5850.26640760914	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGCAAAGTCACCAAGTC	8415	False	NA	NA	False	NA	NA	NA	78387691	78386063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386868_78386977_78387057_78387133_78387431_78387522
95321	chr10	-	3467	14	Antisense	novelGene_ENSMUSG00000037608.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGGGGCGTGGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	20216030	20188217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20188349_20193751_20193856_20197746_20197861_20198706_20199615_20200883_20201550_20201673_20201841_20202906_20203136_20203845_20203952_20205050_20205139_20207829_20208005_20209134_20209321_20210244_20210391_20215453_20215666_20215795
95322	chr5	+	4392	4	Intergenic	novelGene_894	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	66	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGCACTTATAATAAAACAA	3143	False	NA	NA	False	NA	NA	NA	145267063	145273962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_145267994_145268038_145268168_145270538_145272030_145272120
95324	chr4	+	1903	5	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.433012701892219	254	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGAGAAGGAGACCTTC	NA	False	NA	NA	False	NA	NA	NA	135047798	135054470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399
95325	chrM	+	1123	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	20	1	20	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	216	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTGATAGTATAAACAT	18	False	NA	107	True	NA	NA	NA	14164	15287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15300
95326	chrM	+	885	2	Genic_Genomic	ENSMUSG00000064341.1	novel	957	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2761_2835
95328	chr7	+	3323	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	-231	-1	-231	1	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	182	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2389	False	NA	NA	False	NA	NA	NA	13012520	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
95329	chr16	+	6008	10	NNC	ENSMUSG00000022812.15	novel	656	2	NA	NA	24101	-641	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.4704018478297	131	62	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTAGGTTAGCCTGGAAAT	NA	False	NA	NA	False	NA	NA	NA	37988757	38065805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_37988911_37991025_37991110_38004796_38004908_38008172_38008304_38011889_38011997_38014258_38014357_38028356_38028453_38040333_38040521_38049039_38049139_38060863
95330	chr14	-	3269	5	NIC	ENSMUSG00000022124.16	novel	4309	5	NA	NA	-13	-16	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	68.4945253286713	106	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGATAGTTACTAATGTG	9848	False	NA	NA	False	NA	NA	NA	103336955	103318485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336791
95331	chr2	-	1754	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	39	2	-32	-2	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	11	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
95332	chr8	+	901	4	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	-41	1274	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2986.28669457944	20	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAATTTGCATTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	57964899	57967517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965040_57965608_57965783_57966095_57966205_57967039
95333	chr4	+	2751	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	11	234	-7	-234	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	2	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	905	False	NA	NA	False	NA	NA	NA	145237339	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
95334	chr13	+	3449	3	Intergenic	novelGene_1483	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	80849204	80854189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_80849501_80850981_80851437_80851491
95335	chr7	+	1142	5	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	1254	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3547.19553837958	2	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46499664	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46499776_46500308_46500483_46501300_46501419_46503442_46503531_46504400
95336	chr8	+	342	2	Antisense	novelGene_ENSMUSG00000031633.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACATTCTTGGGGTCT	NA	False	NA	NA	False	NA	NA	NA	46660427	46661545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_46660660_46661435
95337	chr9	-	3823	9	Antisense	novelGene_ENSMUSG00000119149.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	40	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCAGCCTTCTCCCCGCC	NA	False	NA	NA	False	NA	NA	NA	13292035	13246621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_13246675_13251693_13252422_13252848_13253056_13262360_13262452_13266809_13266935_13272647_13272831_13281892_13282069_13289698_13291337_13291413
95338	chr4	-	4045	11	Intergenic	novelGene_2014	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	20	107	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTAGCCCCTCCTTCCG	6700	False	NA	NA	False	NA	NA	NA	145269980	145136820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_145136994_145138753_145138851_145173287_145173343_145174457_145174577_145176035_145176382_145177218_145177368_145178982_145180714_145216511_145216655_145216730_145216898_145216941_145217540_145269513
95339	chr17	+	3462	18	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-12	-28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	575.748809848116	13	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCAATAAAATAAAATTCTG	408	False	NA	NA	False	NA	NA	NA	56610308	56630458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629462_56629569
95340	chr10	+	3874	8	Antisense	novelGene_ENSMUSG00000036112.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	133	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAACAAAACAGGACAATCA	3253	False	NA	NA	False	NA	NA	NA	93694348	93722968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_93697428_93701268_93701359_93704739_93704822_93705976_93706164_93707352_93707509_93715400_93715507_93715939_93716001_93722855
95341	chrM	-	1010	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGGCTCTGCCACC	9986	False	NA	-1	True	NA	NA	NA	3710	2700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
95342	chr4	-	2186	10	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	39	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	500.030912624657	22	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137523656	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470031_137473696_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
95343	chr11	-	3021	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	-10796	-11	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1102.57715033869	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGAAATGAATACATGTCT	9439	False	NA	NA	False	NA	NA	NA	50202613	50185304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50185685_50186252_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430
95344	chr13	-	4946	31	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	-235	66626	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	253.537200864532	1211	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGCGCGGGGACGAAACCC	7001	False	NA	NA	False	NA	NA	NA	113064167	112937325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_112937799_112971390_112971548_112993279_112993559_112996175_112996236_113003329_113003507_113003976_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
95345	chr2	-	3405	14	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	-1606	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	98.519514181487	6	11	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATTTCCTGTCCTGATC	1500	False	NA	NA	False	NA	NA	NA	155987712	155965573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939_155986199_155986376_155986505_155987516
95346	chr6	-	4341	11	NIC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	24	2458	intron_retention	FALSE	canonical	3	82	junction_9	9.78825827203185	11	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTGTGTTGTTTGTAG	NA	False	NA	NA	False	NA	NA	NA	37419057	37308768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
95347	chr17	+	2726	14	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	51	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	652.942198661489	7	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	550	False	NA	NA	False	NA	NA	NA	56610450	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612154_56619876_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
95348	chr16	+	2266	11	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	1	-1	intron_retention	FALSE	canonical	0	0	junction_2	794.333362008672	11	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927470_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
95349	chrX	-	669	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	403	-73	-403	mono-exon	FALSE	NA	NA	NA	NA	NA	13	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGCCCAGAACATCATCC	NA	False	NA	NA	False	NA	NA	NA	79238531	79237862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237900_79238500
95350	chr4	+	4373	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14303	2908	multi-exon	TRUE	non_canonical	0	0	junction_3	44.3796750276019	3	35	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAATGTGACTTATCCTG	NA	False	NA	NA	False	NA	NA	NA	145159006	145180366	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160318_145160385_145176036_145176995_145177162
95351	chr3	-	4446	22	NNC	ENSMUSG00000015697.15	novel	4658	22	NA	NA	16	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	66.4876167011811	2	66	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTTGGTCTGAAATGG	1705	False	NA	NA	False	NA	NA	NA	95264450	95230837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95231502_95231615_95231705_95232089_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264337
95352	chr5	-	2708	18	NIC	ENSMUSG00000041890.18	novel	5032	19	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_4	59.1705060729358	2	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	False	NA	NA	False	NA	NA	NA	114911490	114867635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
95353	chr4	+	2274	19	ISM	ENSMUSG00000028292.15	ENSMUST00000029968.14	1868	20	17	6	0	-2	intron_retention	FALSE	canonical	3	576	junction_1	52.339495980628	10	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTGTAGTAGTG	5	True	NA	NA	False	NA	NA	NA	34614973	34660161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490
95354	chr4	-	5442	5	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	232	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCCTCAGAGCCACTCCT	NA	False	NA	NA	False	NA	NA	NA	147421005	147390050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147390230_147409227_147409333_147413436_147413565_147415723_147416339_147416590
95355	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
95356	chr8	+	3916	20	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-1	-2098	intron_retention	FALSE	canonical	2	1913	junction_1	396.686679042339	6	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760546	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
95357	chr9	+	1613	7	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.74535599249993	14	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCCCATTTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	78385781	78387926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386819_78386908_78387057_78387133_78387433_78387525_78387710_78387800
95358	chr5	+	5803	10	Intergenic	novelGene_690	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	105	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTACCGCACTTCCTCA	NA	False	NA	NA	False	NA	NA	NA	32950820	33011591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_32951174_32952930_32953008_32977211_32977319_32977938_32978113_32979415_32979483_32984301_32988899_32989150_32989200_32992954_32993028_33001759_33001902_33011427
95359	chr17	+	2052	1	Intergenic	novelGene_186	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGGAGCTGTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
95360	chr6	+	4466	22	Antisense	novelGene_ENSMUSG00000107878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGCGCCCTGCGCCCTGCGC	NA	False	NA	NA	False	NA	NA	NA	137454248	137626190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_137456127_137459148_137459279_137460538_137460720_137467213_137467438_137476579_137476726_137477534_137477641_137482384_137482520_137486079_137486263_137489148_137489293_137491272_137491353_137491703_137491790_137494068_137494196_137496440_137496515_137499150_137499287_137499826_137499910_137504084_137504238_137504367_137504528_137505522_137505598_137514622_137514693_137516319_137516400_137568415_137568494_137626053
95361	chr7	+	1031	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-15	216	-15	-216	mono-exon	FALSE	NA	NA	NA	NA	NA	7	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACCTCATGGCCTACAT	NA	False	NA	NA	False	NA	NA	NA	51396379	51397410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397400
95362	chr19	-	3316	14	NIC	ENSMUSG00000025200.8	novel	4068	15	NA	NA	4	-8	combination_of_known_splicesites	FALSE	canonical	1	1	junction_13	56.5601737482999	2	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACACTTTTCTAAGGCTGA	NA	False	NA	NA	False	NA	NA	NA	44124060	44098477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117664_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44122784
95363	chr15	-	3583	5	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	5	-1	intron_retention	FALSE	canonical	3	16287	junction_4	6556.51458474699	11	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3576	False	NA	NA	False	NA	NA	NA	79967549	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962628_79962907_79964754_79965096_79965985_79966590_79966784_79967524
95364	chr4	-	2977	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	108.849621037466	4	9	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9499	False	NA	NA	False	NA	NA	NA	147894269	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845795_147889718_147889780_147891546_147891641_147893953
95365	chr13	+	4013	7	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	5	2786	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	115.399908530678	1	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTTAATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	62277751	62324019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62289822_62289984_62317255_62317383_62317567_62317629_62318963_62319797_62320721_62321979_62322536
95366	chr11	+	4326	7	ISM	ENSMUSG00000037331.16	ENSMUST00000178636.2	6617	19	41936	0	9387	0	3prime_fragment	FALSE	canonical	3	480	junction_6	70.6857285611616	4	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGTCTCCCATCT	NA	False	NA	NA	False	NA	NA	NA	57941825	57952860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57942034_57942450_57942558_57943405_57943558_57946292_57946438_57947879_57947990_57948086_57948215_57949384
95367	chr2	+	2644	14	FSM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	-11	1018	-11	971	multi-exon	FALSE	canonical	3	2736	junction_8	179.963737307165	42	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGCCCCGACTCTGCCC	NA	False	NA	NA	False	NA	NA	NA	162896595	162925590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
95368	chr17	-	2558	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	1	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	39071	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884199	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879036_45879104_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
95369	chr5	-	850	7	Antisense	novelGene_ENSMUSG00000029465.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGTAAGCCGGAAGAGGCG	NA	False	NA	NA	False	NA	NA	NA	122544228	122529975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_122530060_122534878_122534980_122539709_122539785_122541419_122541489_122542184_122542313_122543145_122543240_122543929
95370	chr13	-	2552	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-2	-3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	2927.67418847217	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTTATGACGTGTGCCC	4778	False	NA	NA	False	NA	NA	NA	58550303	58539055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541056_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
95371	chr5	+	2182	5	FSM	ENSMUSG00000066613.15	ENSMUST00000125213.8	868	5	-15	-1299	-4	-3	multi-exon	FALSE	canonical	3	13	junction_2	94.3514043350707	88	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATC	8366	False	NA	NA	False	NA	NA	NA	110144382	110158274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110144500_110151218_110151319_110154809_110154937_110155121_110155183_110156497
95372	chr8	+	913	5	NIC	ENSMUSG00000000740.13	novel	780	6	NA	NA	74	0	intron_retention	FALSE	canonical	3	17818	junction_4	2909.59597710747	172	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	123829162	123831983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
95373	chr17	+	2470	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	-71	11	-71	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	14812	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165501	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
95374	chr14	-	2647	18	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-2	-2	combination_of_known_junctions	FALSE	canonical	3	64	junction_9	138.956989686374	40	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTTTCTTCGCATTGT	NA	False	NA	NA	False	NA	NA	NA	47655636	47625237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_47625577_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643323_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
95375	chrX	+	6918	45	FSM	ENSMUSG00000079487.12	ENSMUST00000087948.11	6809	45	-132	23	98	-23	multi-exon	FALSE	canonical	2	86	junction_14	18.8047135597997	211	10	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGAGCTTCTTTGCAAAA	NA	False	NA	NA	False	NA	NA	NA	100317733	100341048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100317966_100318501_100318607_100318777_100318970_100319097_100319258_100319705_100319888_100320047_100320159_100320270_100320526_100321039_100321187_100321458_100321559_100321669_100321807_100322033_100322166_100322950_100323078_100324161_100324392_100324773_100324855_100324968_100325140_100325343_100325489_100325655_100325707_100326006_100326126_100326305_100326450_100326887_100327052_100327273_100327406_100327751_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337398_100337477_100337563_100337782_100339447_100339695_100340198_100340340_100340524_100340607_100340792
95376	chr16	+	3741	6	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_3	815.241951815533	25	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927593_22928725_22930014_22930252_22930343_22930566
95377	chr17	-	2383	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-4	-15	intron_retention	FALSE	non_canonical	0	0	junction_2	4313.6784024774	114	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGTTTTATACAGTCC	NA	False	NA	NA	False	NA	NA	NA	45884185	45878715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879828_45880053_45880165_45880309_45880455_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
95379	chr1	-	5998	14	NNC	ENSMUSG00000038733.15	novel	6452	14	NA	NA	2165	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	44.2881901524802	213	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAATTCTCGTTGCGTTCC	NA	False	NA	NA	False	NA	NA	NA	181036826	181000795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181001379_181001420_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777
95380	chrM	+	648	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	312	-3	312	3	mono-exon	FALSE	NA	NA	NA	NA	NA	456	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	9	False	NA	160	True	NA	NA	NA	3062	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3100_3700
95381	chr1	-	1978	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	57	2459	57	-2459	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTTAGTCACCATGTG	NA	False	NA	NA	False	NA	NA	NA	13730713	13696012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
95382	chr9	-	6964	23	Genic_Genomic	ENSMUSG00000111246.2	novel	2972	1	NA	NA	-100726	-2623	multi-exon	FALSE	non_canonical	0	0	junction_1	0	50	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAAGATCAGCGGGTCC	NA	False	NA	NA	False	NA	NA	NA	31293014	31191939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_31191967_31223009_31223201_31224721_31224915_31227462_31227628_31229803_31229865_31236919_31237131_31238611_31238852_31240955_31241160_31246610_31246684_31248598_31248715_31251621_31251753_31252534_31252781_31258088_31258433_31260403_31260562_31264580_31264760_31265767_31265880_31268435_31268637_31270301_31270447_31271043_31271219_31272117_31272256_31273624_31273796_31282119_31282223_31289634
95383	chr8	-	5977	4	FSM	ENSMUSG00000110444.3	ENSMUST00000072427.7	7668	4	-17	1708	0	-1708	multi-exon	FALSE	canonical	3	36	junction_3	3.85861230093008	125	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGAACATAATTTTATAA	NA	False	NA	NA	False	NA	NA	NA	69848191	69820869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_69826560_69827709_69827771_69827957_69828085_69848092
95384	chr4	+	5665	11	FSM	ENSMUSG00000034210.15	ENSMUST00000106525.9	2792	11	11	-2884	11	-8	multi-exon	FALSE	canonical	3	140	junction_6	11.0657128102983	150	51	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTCACTGTGTCTGACT	NA	False	NA	NA	False	NA	NA	NA	115594951	115634516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034
95385	chrM	+	1254	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-111	-73	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGCCCTTCACATAAT	74	False	NA	NA	False	NA	NA	NA	10055	11471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_11122_11283
95386	chr13	-	7420	2	ISM	ENSMUSG00000094499.4	ENSMUST00000234850.2	3029	10	-12	22746	-12	-22511	5prime_fragment	FALSE	canonical	3	14	junction_1	0	16	95	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCACTTTGTTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	66549944	66521723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_66529024_66549824
95387	chr8	+	4230	6	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-7	-576	multi-exon	FALSE	non_canonical	0	0	junction_2	443.975224533982	7	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTACTCTTCTGTGGCTGCT	NA	False	NA	NA	False	NA	NA	NA	20697977	20726690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20711944_20711991_20712098_20717197_20717497_20721120_20721241_20723149
95388	chr4	+	3137	4	FSM	ENSMUSG00000065999.14	ENSMUST00000139784.8	628	4	-287	-2222	-287	150	multi-exon	FALSE	canonical	3	55	junction_1	19.7540431867054	3	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTGGTGGATAACAATCT	NA	False	NA	NA	False	NA	NA	NA	147637446	147669805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290
95389	chr10	-	1134	1	Antisense	novelGene_ENSMUSG00000069622.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	213	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGGCGCCCAGTCTTTCT	NA	False	NA	NA	False	NA	NA	NA	59232582	59231448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_59231400_59232600
95390	chr17	+	1333	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-588	1104	-588	-1104	mono-exon	FALSE	NA	NA	NA	NA	NA	1218	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGCCTCTCGGCGCCCC	NA	False	NA	NA	False	NA	NA	NA	40156655	40157988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40156700_40158000
95392	chr15	-	3876	1	Intergenic	novelGene_3249	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	115	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCCCTAAAGATTATTATG	9795	False	NA	NA	False	NA	NA	NA	22705095	22701219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22701200_22705100
95393	chr16	-	564	1	Intergenic	novelGene_3768	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	557	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95394	chr15	+	5195	7	NNC	ENSMUSG00000022412.15	novel	4097	8	NA	NA	3	0	intron_retention	FALSE	canonical	0	0	junction_1	93.2237451868711	271	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACGTGTCTATGTGGT	2756	False	NA	NA	False	NA	NA	NA	80118221	80137572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80118334_80118882_80118982_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
95395	chr2	+	2459	1	Genic_Genomic	ENSMUSG00000064263.7	novel	NA	NA	NA	NA	9645	554	mono-exon	FALSE	NA	NA	NA	NA	NA	9	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCACTTGCCTAGTATG	NA	False	NA	NA	False	NA	NA	NA	71559405	71561864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_71559400_71561900
95396	chr4	-	1824	8	NNC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	417.754444034057	19	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAGTCAAATGGATTCA	NA	False	NA	NA	False	NA	NA	NA	148711197	148701181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148701302_148702022_148702821_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
95397	chr17	+	1061	4	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGCGTCGGTTAGTGGAA	NA	False	NA	NA	False	NA	NA	NA	45878705	45880276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879480_45879772_45880051_45880163
95400	chr3	-	4435	6	FSM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	-38	93	-29	-4	multi-exon	FALSE	canonical	3	59	junction_2	5.35163526410386	219	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATTTTGTCTGTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	154302770	154282160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_154285929_154293113_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
95401	chrX	-	5014	3	Intergenic	novelGene_4023	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	257	98	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCTTGCAATTTGCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116231727	116226573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116227098_116227168_116227426_116227494
95402	chrX	-	6222	10	NNC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	3	-53	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	99.7085877401531	86	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTATTGTTCAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	104972969	104909204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_104909279_104909325_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
95403	chr9	+	5971	36	NNC	ENSMUSG00000033392.17	novel	2727	16	NA	NA	16979	7	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	41.8751886989352	167	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTTAACTATGTAGCTCA	NA	False	NA	NA	False	NA	NA	NA	113587778	113748757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_113587861_113590657_113590737_113595635_113595740_113599264_113599357_113600850_113600927_113602747_113602846_113615631_113615703_113642209_113642357_113664242_113664323_113670626_113670720_113673141_113673288_113676770_113676907_113677548_113677620_113679190_113679251_113680890_113680969_113681690_113681859_113682416_113682473_113683240_113683415_113691253_113691356_113697615_113697787_113699690_113699799_113705311_113705419_113709009_113709255_113710755_113710820_113719025_113719190_113721464_113721544_113725709_113725854_113728523_113728668_113730558_113730666_113732909_113733064_113735064_113735294_113737754_113737949_113738483_113738613_113740477_113740685_113744205_113744323_113747062
95404	chr2	-	8725	30	FSM	ENSMUSG00000026924.18	ENSMUST00000091252.5	8737	30	14	-2	-2	0	multi-exon	FALSE	canonical	3	97	junction_2	23.0104665219992	255	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATGGCTTCCTTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	26335214	26299442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_26300966_26302847_26302926_26304382_26304458_26305318_26305414_26305645_26305784_26306128_26306241_26306382_26306440_26306645_26306724_26309632_26309783_26311385_26311469_26312019_26312266_26313465_26313650_26313894_26314009_26314428_26314570_26315205_26315312_26315487_26315600_26315778_26315897_26316091_26316174_26316462_26316561_26318151_26318398_26318826_26318966_26319073_26319136_26319385_26319529_26320088_26320264_26320405_26320605_26321116_26321241_26323342_26323441_26325923_26326061_26328398_26332083_26335086
95405	chr14	+	2059	1	Intergenic	novelGene_628	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGCGTGCGCGAGAGACA	NA	False	NA	NA	False	NA	NA	NA	95048501	95050560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_95048500_95050600
95406	chr13	-	1816	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	27	62	27	-62	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	7748	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGAATCTTTTATGTGAGC	NA	False	NA	NA	False	NA	NA	NA	97334838	97312900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
95407	chr18	-	3327	11	NNC	ENSMUSG00000024268.17	novel	3995	13	NA	NA	-3829	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.852847759083	118	27	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACCAAAAACCTCAAA	NA	False	NA	NA	False	NA	NA	NA	25638125	25610684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_25612769_25619850_25620023_25620296_25620376_25624137_25624282_25629278_25629360_25630521_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
95408	chr18	-	4998	18	NIC	ENSMUSG00000057440.9	novel	4981	17	NA	NA	20	-7	combination_of_known_splicesites	FALSE	canonical	1	4	junction_16	33.738563357669	56	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTCTTCAAATAATGCTT	1650	False	NA	NA	False	NA	NA	NA	7608951	7347970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7607884_7608010_7608913
95409	chr19	+	8030	11	NIC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	0	-17	intron_retention	FALSE	canonical	3	364	junction_10	255.261454199415	22	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGCAGTGTGGTTTTC	834	False	NA	NA	False	NA	NA	NA	6413951	6427209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_6414149_6415693_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
95410	chrM	+	836	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	6	-161	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	4	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAATGACCCACCAAACT	-11	True	NA	NA	False	NA	NA	NA	7765	8601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
95411	chr4	+	2718	6	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	6	40367	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	167.233489469065	530	88	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTCCTCAAAATATCTAA	NA	False	NA	NA	False	NA	NA	NA	146206906	146255371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146250678_146250737_146251579_146251707_146253158
95412	chr11	-	2715	18	Antisense	novelGene_ENSMUSG00000020739.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	26	5	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGGACCCCCTCCAGGG	NA	False	NA	NA	False	NA	NA	NA	115474726	115455275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_115455387_115455976_115456072_115457424_115457590_115459188_115459260_115459504_115459547_115460525_115460595_115460821_115460944_115468752_115468891_115468989_115469111_115469312_115469445_115469613_115469720_115471326_115471414_115471555_115471617_115471741_115472679_115472758_115472862_115473781_115473853_115474149_115474252_115474544
95413	chr19	+	4168	10	Antisense	novelGene_ENSMUSG00000025077.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6911	False	NA	NA	False	NA	NA	NA	56517596	56536568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_56518097_56519649_56519793_56525561_56525717_56526730_56526877_56528615_56528724_56529936_56530056_56531064_56531198_56532445_56534079_56535068_56536136_56536404
95414	chr14	+	9196	38	NNC	ENSMUSG00000097533.3	novel	1277	4	NA	NA	-71	43892	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	193	73	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCGGCGGAGCACGGCC	6946	False	NA	NA	False	NA	NA	NA	52434887	52495201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_52436612_52439089_52439205_52439600_52439781_52439960_52440071_52441328_52441641_52441894_52442042_52442246_52442964_52443052_52443264_52444308_52444518_52444693_52444746_52445445_52445522_52447941_52448072_52449271_52449377_52449853_52449943_52450018_52450175_52450278_52450481_52450709_52450907_52451669_52451780_52451924_52452106_52452629_52452801_52453342_52453538_52453700_52453907_52455169_52455431_52455631_52455776_52457056_52457230_52458369_52458617_52458761_52458882_52459938_52460077_52462082_52462166_52463493_52463618_52464072_52464126_52464692_52464764_52464955_52465140_52468896_52469010_52470001_52470387_52472579_52472958_52474185_52475248_52495136
95415	chr11	+	861	2	Antisense	novelGene_ENSMUSG00000020152.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	66	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAAAGTTGTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	20012580	20014755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20013303_20014616
95417	chr4	-	1194	2	Genic_Genomic	ENSMUSG00000095937.2	novel	1002	1	NA	NA	-71	191	multi-exon	FALSE	non_canonical	0	0	junction_1	0	194	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740977	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_91740019_91740088
95418	chr19	+	2315	1	NIC	ENSMUSG00000024661.8	novel	1494	5	NA	NA	29	-2	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTTCTTTTCTTTGTGA	4999	False	NA	NA	False	NA	NA	NA	9960139	9962454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_9960100_9962500
95419	chr11	+	5113	30	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-7	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	55.6163604360889	21	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771171	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84771615_84772122_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
95420	chr4	-	4078	11	Intergenic	novelGene_2015	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	23	46	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATGAAATGTCGGAACT	6700	False	NA	NA	False	NA	NA	NA	145269980	145136851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_145136994_145138753_145138851_145173287_145173343_145174457_145174577_145176035_145176487_145177069_145177189_145178993_145180714_145216511_145216655_145216730_145216898_145216941_145217540_145269513
95422	chr1	-	2336	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	52	5814	16	31	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	77	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGACATTCCAAGACAGT	NA	False	NA	NA	False	NA	NA	NA	86287070	86278254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
95423	chr4	+	4081	6	NNC	ENSMUSG00000066007.16	novel	724	2	NA	NA	-55188	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	199.955595070506	1	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	146038205	146135317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146094927_146095022_146126784_146126867_146129876_146130004_146131535_146131838_146131988
95424	chr10	-	2706	7	ISM	ENSMUSG00000075232.7	ENSMUST00000099945.6	3204	8	7381	62	6771	-62	3prime_fragment	FALSE	canonical	3	315	junction_3	52.3832034148352	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTCTGTACCACAATG	NA	False	NA	NA	False	NA	NA	NA	40170801	40163515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712
95425	chr13	+	4251	7	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	57706	4224	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4.47213595499958	2	29	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATTTAATTTTATTTAC	NA	False	NA	NA	False	NA	NA	NA	61860822	61895808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61860907_61867698_61867740_61889663_61889791_61889975_61889982_61891563_61892787_61892954_61893358_61893441
95426	chr16	+	3102	8	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	563	junction_3	521.17203082503	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
95427	chr1	-	1107	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAGGAGGCGGTGGGCG	9062	False	NA	NA	False	NA	NA	NA	86458417	86454539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
95428	chr11	-	2344	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	39	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1560.00673075471	2	9	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAATTAAGTGAAATTGTA	9304	False	NA	NA	False	NA	NA	NA	106679670	106672376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676350_106677064_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
95430	chr15	-	3009	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	277	2	270	-2	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	4	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCATGAGTCTCAGTGGT	16	True	NA	NA	False	NA	NA	NA	36794505	36771015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
95431	chr9	+	1734	8	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	intron_retention	FALSE	canonical	3	16882	junction_3	1490.34117447198	97075	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084760_64085002_64085300_64085504
95432	chr3	+	4264	14	FSM	ENSMUSG00000039068.17	ENSMUST00000106101.2	7539	14	2	3273	2	1	multi-exon	FALSE	canonical	0	0	junction_1	63.1683202752023	109	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTCTGTTTTTCATCTG	NA	False	NA	NA	False	NA	NA	NA	152102332	152165190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_152102399_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
95433	chr7	-	3489	11	Antisense	novelGene_ENSMUSG00000030802.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	898	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCCGGCTGTAACAT	3453	False	NA	NA	False	NA	NA	NA	127509399	127503262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_127503341_127503933_127504296_127504391_127504460_127504539_127504651_127504918_127504964_127505038_127505163_127505241_127505341_127505518_127505593_127506388_127506518_127506611_127506701_127507089
95434	chr9	+	2817	14	ISM	ENSMUSG00000032350.10	ENSMUST00000034905.9	3423	16	21639	20	10032	-20	3prime_fragment	FALSE	canonical	3	241	junction_1	18.3454684600244	117	10	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGGATTCCTATTCAAA	NA	False	NA	NA	False	NA	NA	NA	77683455	77701747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_77683591_77686803_77686918_77688365_77688425_77688515_77688650_77692615_77692691_77693031_77693149_77693992_77694132_77694558_77694672_77695088_77695182_77695469_77695575_77698996_77699079_77699161_77699266_77699334_77699456_77700321
95435	chr13	+	3263	9	Antisense	novelGene_ENSMUSG00000114549.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	22	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACCATTCAAGCCTGCAC	NA	False	NA	NA	False	NA	NA	NA	66817020	66846292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66819454_66821006_66821064_66821262_66821394_66832179_66832303_66833393_66833452_66834630_66834801_66836256_66836399_66841838_66841915_66846219
95436	chr6	+	3709	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	37	666	17	298	multi-exon	FALSE	canonical	3	250	junction_4	40.3554209493595	19	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTCCTGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	83303034	83320092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
95437	chr6	+	3683	10	NIC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-26	-14	intron_retention	FALSE	canonical	3	404	junction_1	57.3778896633731	1	128	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAATGTTTCAATGCTTT	NA	False	NA	NA	False	NA	NA	NA	72575584	72585394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
95438	chrM	+	895	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	249	0	249	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	97	False	NA	126	True	NA	NA	NA	14393	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
95439	chr7	+	5027	15	NIC	ENSMUSG00000035545.14	novel	5105	15	NA	NA	4	-40	intron_retention	FALSE	canonical	3	127	junction_1	77.0351099386851	153	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGGAAGCTTGAAACCAAA	96	False	NA	NA	False	NA	NA	NA	4140051	4151131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_4140122_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264
95440	chr13	-	2229	5	NNC	ENSMUSG00000072066.8	novel	1457	4	NA	NA	-29063	-469	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	6.49519052838329	6	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCGGTTAAAGTTTGCATG	NA	False	NA	NA	False	NA	NA	NA	62801059	62751295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62753195_62754939_62755001_62755186_62755314_62771851_62771969_62801034
95441	chr15	+	1209	10	NNC	ENSMUSG00000056851.15	novel	3222	14	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	202.731897397085	86	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGCTTTTTCTTTGTG	5715	False	NA	104	True	NA	NA	NA	102382679	102407318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102382715_102383009_102383204_102391601_102391724_102392592_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
95442	chr11	-	1114	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	75	-187	75	187	mono-exon	FALSE	NA	NA	NA	NA	NA	9	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGCC	4536	False	NA	NA	False	NA	NA	NA	20285938	20284824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20285900
95443	chr17	+	3446	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113035.8	3402	17	-47	3	-47	-3	multi-exon	FALSE	canonical	3	348	junction_6	590.514232338011	1	76	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGTGGCGCACGTCTT	1365	False	NA	NA	False	NA	NA	NA	56611265	56630483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
95444	chr2	-	8015	37	NIC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	-6	-12	combination_of_known_junctions	FALSE	canonical	3	18	junction_35	49.3701923741616	132	83	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAAGGTAACATTCTTT	NA	False	NA	NA	False	NA	NA	NA	59956047	59729718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59907213_59907256_59955806
95445	chr12	+	2181	1	Intergenic	novelGene_4299	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	51	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTCCTGAAGATGTAAG	NA	False	NA	NA	False	NA	NA	NA	17978882	17981063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_17978900_17981100
95446	chr3	+	2892	7	NIC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	-30	-36	intron_retention	FALSE	canonical	3	406	junction_6	28.1982071928144	1	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAACATGACTGTGTCA	4451	False	NA	NA	False	NA	NA	NA	95222527	95230874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_95222657_95227372_95228071_95228252_95228372_95228500_95229271_95229437_95229545_95229630_95229785_95229959
95447	chr1	+	2593	9	NNC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-1	-330	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	54.5389768880935	1	17	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGGTTTGAGATATCATT	NA	False	NA	NA	False	NA	NA	NA	173248162	173293268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_173248253_173272551_173272822_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287669_173289472_173289887_173291424_173291614_173292536
95448	chr13	+	8499	13	FSM	ENSMUSG00000039087.18	ENSMUST00000128570.9	8436	13	-71	8	-71	3	multi-exon	FALSE	canonical	3	20	junction_1	29.1099448451708	93	97	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGGCACACGACCAACCT	NA	False	NA	NA	False	NA	NA	NA	38010219	38135973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_38010321_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38125518_38125681_38130832_38131640_38132618
95449	chr5	+	4359	25	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGTATCCATCAGCACCCC	220	False	NA	NA	False	NA	NA	NA	31298015	31331805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31299193_31302041_31302126_31302837_31302932_31303022_31303120_31303315_31303437_31311014_31311089_31311536_31311617_31315478_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323360_31323703_31323733_31325041_31325156_31325341_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31330728_31330858_31331113_31331436_31331577
95450	chr16	+	591	2	Intergenic	novelGene_3806	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGGCCATCAGGATATTT	NA	False	NA	NA	False	NA	NA	NA	57211475	57225471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57212050_57225454
95453	chr13	-	3051	12	NNC	ENSMUSG00000021495.11	novel	4341	11	NA	NA	172	1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_5	51.3880070904416	110	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTAGTATGATGGTGATT	NA	False	NA	NA	False	NA	NA	NA	55717599	55687130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55687526_55689436_55689535_55690394_55690471_55690596_55691603_55696930_55697171_55697774_55697821_55698036_55698221_55700774_55701163_55702029_55702262_55703795_55704039_55712332_55712394_55717517
95454	chr2	+	3053	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	561.440476171805	6	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGCCCCTAGGTGTCT	651	False	NA	NA	False	NA	NA	NA	26279357	26287136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281871_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285630_26285712
95455	chr8	-	2353	9	NNC	ENSMUSG00000003809.15	novel	2167	11	NA	NA	7	-199	intron_retention	FALSE	canonical	0	0	junction_4	90.6242241346098	11	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTACTCCTAGGACTGGAC	NA	False	NA	NA	False	NA	NA	NA	85620539	85613220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617332_85617557_85617641_85617772_85619030_85619794_85620076_85620104_85620183
95456	chr4	-	6871	49	NIC	ENSMUSG00000050812.19	novel	7045	49	NA	NA	6795	-4	combination_of_known_junctions	TRUE	canonical	3	38	junction_48	27.3396524707653	132	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTCATAATGTGTGTGT	7620	False	NA	NA	False	NA	NA	NA	58905107	58798914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681_58809726_58810615_58810825_58811370_58811563_58811708_58811776_58811851_58811944_58812643_58812711_58813991_58814082_58815258_58815325_58817399_58817551_58819142_58819265_58820127_58820176_58821362_58821469_58822035_58822116_58824165_58824334_58824697_58824816_58826401_58826471_58827036_58827152_58828007_58828063_58828506_58828653_58830333_58830458_58832703_58832806_58833925_58834099_58834496_58834660_58836121_58836257_58840674_58840767_58841382_58841606_58842567_58842649_58844078_58844203_58846998_58847103_58849679_58849803_58849886_58849954_58850903_58850954_58853115_58853195_58853650_58853737_58861524_58861645_58864346_58864429_58869414_58869555_58872588_58872761_58875423_58875574_58877044_58877164_58879017_58879135_58885367_58885499_58905003
95457	chr1	+	3854	2	NNC	ENSMUSG00000041483.15	novel	4933	2	NA	NA	895	180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	139	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTAAATTACATTATGT	NA	False	NA	NA	False	NA	NA	NA	136553533	136557971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_136554279_136554862
95458	chr1	-	3247	16	NIC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	16	-13	intron_retention	FALSE	canonical	3	2257	junction_10	176.880750789904	853	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACATGTGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	20890468	20873242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
95459	chr9	-	1276	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	55	562	55	-99	5prime_fragment	FALSE	canonical	3	9075	junction_6	2020.6003577045	1	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCCCTGGCAAGCCCATGT	7155	False	NA	NA	False	NA	NA	NA	78388951	78386292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
95460	chr17	+	2484	11	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCCGAACGCCCCCGAC	NA	False	NA	NA	False	NA	NA	NA	45878705	45884192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879491_45879784_45880051_45880163_45880314_45880395_45880753_45881183_45881493_45881591_45881704_45881948_45882103_45882337_45882548_45882692_45882838_45884092
95461	chrX	+	5167	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	-484	9	-484	-9	multi-exon	TRUE	canonical	3	179	junction_1	98.1322449554681	1	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTGAGTTGTCGTTTG	NA	False	NA	NA	False	NA	NA	NA	13146724	13160282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
95462	chr11	-	2800	5	NIC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	962	-4	intron_retention	FALSE	canonical	3	195	junction_3	31.059418861273	4	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGGAGCTTGGAGGA	8798	False	NA	NA	False	NA	NA	NA	94540395	94535825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_94536432_94536641_94536832_94538116_94538575_94538769_94538889_94538968
95463	chr8	+	5714	17	NNC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	-32200	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	19.976548750973	110	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATTAGTTTTAATTTG	NA	False	NA	NA	False	NA	NA	NA	13305989	13371395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13307976_13321588_13321719_13328514_13328688_13330910_13331126_13337803_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358348_13358467_13360144_13360341_13363805_13363957_13368842_13368923_13369762_13369913_13370760
95464	chr4	+	3926	11	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-86017	182150	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	145.035306046493	3	30	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146500466	146806002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500637_146516904_146516986_146518646_146518740_146597241_146597335_146603534_146603615_146797295_146797381_146800390_146800518_146802050_146802609_146802693_146803698_146803863_146804170_146804673
95467	chr15	+	6099	30	Antisense	novelGene_ENSMUSG00000115646.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	126	18	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCGGGCGACCATGTGC	NA	False	NA	NA	False	NA	NA	NA	63958710	64254649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_63961373_63963897_63964016_63965854_63966360_63971382_63971440_63974251_63974318_63982750_63982924_63991804_63992039_63993858_63993967_63995523_63995589_63995713_63995833_63996166_63996249_63996565_63996753_63999219_63999315_64001020_64001156_64001954_64002119_64007654_64007704_64009802_64009893_64021456_64021524_64024677_64024779_64030765_64030854_64032070_64032147_64038308_64038397_64039549_64039679_64044533_64044583_64045065_64045145_64063335_64063479_64080332_64080405_64184196_64184324_64221675_64221761_64254563
95468	chr1	-	2040	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	46	754	-5	-10	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	1	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCCCCTCTGTTTGTGCT	NA	False	NA	NA	False	NA	NA	NA	75195892	75191625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
95469	chr3	+	1886	9	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	1	-292	combination_of_known_junctions	FALSE	canonical	3	65	junction_8	1429.67163515788	607	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTTTGAAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	89986972	90007911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834
95471	chr13	+	5264	22	NIC	ENSMUSG00000021500.18	novel	5676	23	NA	NA	-2	-2032	intron_retention	FALSE	non_canonical	0	0	junction_18	83.319971717919	4	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGGACCCTAGAGTGC	NA	False	NA	NA	False	NA	NA	NA	55782837	55827037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
95472	chr2	+	2495	8	ISM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	2607	5	1019	-5	3prime_fragment	FALSE	canonical	3	1351	junction_3	85.1366248917537	10	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGAGTGGATGCCCCTA	3251	False	NA	NA	False	NA	NA	NA	26281957	26287129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
95473	chr6	+	1532	8	NNC	ENSMUSG00000036371.7	novel	15474	8	NA	NA	5	67	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2405.6243535956	3	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATTGGACATAATACT	5854	False	NA	NA	False	NA	NA	NA	67243976	67261362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244195_67248197_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
95474	chr7	+	1373	10	FSM	ENSMUSG00000030703.9	ENSMUST00000032944.9	1148	10	82	-307	82	303	multi-exon	TRUE	canonical	1	3	junction_3	2.43938871112224	52	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGGCCCACTTGTTCCAC	NA	False	NA	NA	False	NA	NA	NA	126365587	126375124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_126365782_126366073_126366117_126366346_126366483_126366562_126366609_126366738_126366858_126366934_126367025_126367741_126367876_126370159_126370220_126370333_126370386_126374625
95475	chr6	-	4371	5	Antisense	novelGene_ENSMUSG00000032712.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGCAGAGCGCGCAGAGG	NA	False	NA	NA	False	NA	NA	NA	149230622	149210950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_149211401_149211817_149211874_149219130_149219204_149226226_149226297_149226900
95476	chr3	+	926	2	Intergenic	novelGene_3099	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	17	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAACAAGTTTGAAGCCGA	NA	False	NA	NA	False	NA	NA	NA	36930742	36931739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_36930910_36930980
95477	chr13	+	3277	4	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-35	1321	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	105.455625212166	934	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66261258	66271971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261403_66267450_66267578_66267777_66267839_66269026
95478	chr11	-	1216	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	131	286	1	-62	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGTGGAAATGGTAGGGA	NA	False	NA	NA	False	NA	NA	NA	33113075	33102572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
95480	chr13	-	4315	15	ISM	ENSMUSG00000021196.15	ENSMUST00000021614.14	2679	22	-34	14849	18	2264	5prime_fragment	FALSE	canonical	3	963	junction_8	81.8493202445188	21	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGTAGGTAGCCGTTCC	NA	False	NA	NA	False	NA	NA	NA	6698795	6646066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
95481	chr17	+	3030	3	ISM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	106	-1	16	0	intron_retention	FALSE	canonical	3	433	junction_1	0.5	72	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTGGTTGGCATT	NA	False	NA	NA	False	NA	NA	NA	45874905	45878597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_45874995_45875505_45875700_45875850
95482	chr11	-	986	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	249	1946	0	547	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGGCCCAGGCCTGT	634	False	NA	NA	False	NA	NA	NA	93859098	93849750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
95483	chr13	+	3172	7	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-25	1312	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	95.8269563095664	18	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAGGAACCTTGACTTAG	NA	False	NA	NA	False	NA	NA	NA	66261268	66271962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66264730_66264842_66267450_66267578_66267777_66267839_66269026_66269602_66269686_66270212_66270295
95484	chr6	+	4378	28	NIC	ENSMUSG00000063870.13	novel	6652	39	NA	NA	6358	-1515	intron_retention	FALSE	canonical	3	227	junction_1	85.8876670891968	18	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTGCCGAGCCTG	8554	False	NA	NA	False	NA	NA	NA	125079889	125106033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_125079996_125081829_125082034_125082138_125082345_125083371_125083504_125083602_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086254_125086429_125086741_125086884_125086973_125087106_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754
95485	chr14	-	6892	7	Antisense	novelGene_ENSMUSG00000075592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	345	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTCCAGCCAGTTCTGT	8432	False	NA	NA	False	NA	NA	NA	56112193	56100620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_56101068_56101188_56102591_56103413_56103545_56103665_56103762_56105474_56105579_56105869_56105971_56107582
95486	chr2	+	947	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11303	-31	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTGGTGTACAACCAACC	NA	False	NA	NA	False	NA	NA	NA	11413731	11426000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425625
95487	chr9	-	4757	9	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	20	-6	at_least_one_novel_splicesite	TRUE	canonical	3	35	junction_5	429.397961540341	3	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTATCTTAAGATTTTAT	NA	False	NA	NA	False	NA	NA	NA	96993190	96957623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96971872_96971930_96975129_96975231_96979155_96979234_96982127_96982293_96992963
95488	chr17	-	3496	7	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	236.259038627802	104	26	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGCCTGTAATCTCACCA	NA	False	NA	NA	False	NA	NA	NA	56597512	56584477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591379_56593460_56593647_56594793_56594877_56597453
95489	chr17	+	2293	2	NNC	ENSMUSG00000096910.3	novel	330	2	NA	NA	-88	485	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACATTAAAAACATAAAATAT	NA	False	NA	NA	False	NA	NA	NA	33521246	33523626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_33522204_33522290
95490	chrX	-	3224	15	ISM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	-71	56489	-71	-56486	5prime_fragment	FALSE	canonical	3	390	junction_14	50.407775963149	186	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	59224520	59157804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
95492	chr18	-	2692	9	NNC	ENSMUSG00000037013.18	novel	2911	10	NA	NA	3341	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	306.689353214291	1	113	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	14812472	14758685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773408_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443
95493	chr4	+	3467	9	Intergenic	novelGene_2056	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_6	217.92659314549	1	37	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	2417	False	NA	NA	False	NA	NA	NA	146289475	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146435241_146435318_146797295_146797381_146800390_146800518_146802050_146802503_146802923_146803281_146803449_146804243_146804573
95494	chr17	+	1125	1	Intergenic	novelGene_203	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTGGTGGTGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155000
95496	chr11	-	4526	18	NNC	ENSMUSG00000009073.17	novel	2394	17	NA	NA	20	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.2715626169229	9	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	9036	False	NA	NA	False	NA	NA	NA	4799345	4715851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_4717556_4717596_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
95497	chr6	-	4394	6	Antisense	novelGene_ENSMUSG00000032712.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	147	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCCGAGCCCAGGGGGCC	NA	False	NA	NA	False	NA	NA	NA	149237151	149211048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_149211401_149211817_149211874_149219130_149219204_149226226_149226297_149226900_149230227_149236634
95498	chr8	+	4427	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-126	-207	multi-exon	TRUE	canonical	0	0	junction_4	502.632258714062	3	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTAGATGTCTTTTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	20697858	20727059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20721120_20721241_20723149_20725005_20725044
95499	chr15	+	5307	12	FSM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	223	28	223	-28	multi-exon	FALSE	canonical	3	60	junction_1	12.5005784990103	125	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGAATAAAACTAACCTG	1481	False	NA	NA	False	NA	NA	NA	89338338	89348643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_89338489_89339386_89339493_89340727_89341007_89341122_89341220_89341337_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
95500	chrM	+	786	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	56	-161	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGCCTACGTATTCACC	-11	True	NA	NA	False	NA	NA	NA	7765	8551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
95501	chr3	+	2401	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	-32	-617	-9	617	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	57	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTACTCCCAGAGAC	NA	False	NA	NA	False	NA	NA	NA	79498639	79511574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
95502	chr14	+	7111	8	Antisense	novelGene_ENSMUSG00000060373.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	70	73	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGAGCCAGGAGTGGT	6122	False	NA	NA	False	NA	NA	NA	52311026	52339422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52312620_52312713_52312873_52313069_52313186_52314861_52315023_52318718_52318765_52319245_52319361_52321571_52321849_52334778
95503	chr2	+	5565	5	ISM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	238	1	238	-1	intron_retention	FALSE	canonical	3	206	junction_1	83.4056353012193	47	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACGTGACGTAAAGGTAGTT	NA	False	NA	NA	False	NA	NA	NA	172212891	172224367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535
95504	chr5	+	8481	28	NNC	ENSMUSG00000029361.19	novel	631	3	NA	NA	-25866	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	8.40193981129314	85	63	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGGACTCACTCTG	3516	False	NA	NA	False	NA	NA	NA	118031373	118096890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_118031437_118031890_118032020_118033845_118033992_118034737_118034901_118035775_118035868_118038535_118038678_118041885_118042026_118043375_118043551_118046054_118046157_118048122_118048318_118048831_118048918_118050787_118050933_118051861_118051967_118052448_118052508_118057460_118057578_118061308_118061484_118063678_118063818_118064517_118064597_118074483_118074678_118076201_118076372_118081189_118081401_118081883_118081972_118083880_118084003_118085484_118085634_118087698_118087894_118090829_118090949_118091859_118095046_118095095
95506	chrM	-	1940	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAATCTAAACTTACTTT	77	True	NA	NA	False	NA	NA	NA	3466	1526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3500
95507	chr3	+	1922	9	ISM	ENSMUSG00000068917.13	ENSMUST00000128318.8	1885	12	4504	2	2319	0	3prime_fragment	FALSE	canonical	3	409	junction_8	58.2344399818527	9	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCCCCCCAATCCCTGGA	NA	False	NA	NA	False	NA	NA	NA	89076789	89084226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
95508	chr10	-	708	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	-26	-1	-26	1	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	650	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATCGGAGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	128462642	128460404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
95509	chr4	+	9385	20	NNC	ENSMUSG00000028437.15	novel	3456	7	NA	NA	-10	74332	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	136.994914680069	405	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGCGCCAGTTCGAACGC	-9	True	NA	NA	False	NA	NA	NA	41349037	41464857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_41349232_41366889_41366931_41371724_41371850_41378459_41378599_41378946_41379871_41387174_41387358_41388095_41388198_41388680_41392252_41392876_41392971_41393436_41395666_41397547_41397655_41400434_41400511_41403791_41403895_41404675_41404805_41409737_41409819_41413825_41414045_41414901_41415000_41423451_41423635_41428343_41428988_41464714
95510	chr4	+	2467	4	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-52	1621	multi-exon	FALSE	non_canonical	0	0	junction_2	2012.42589925691	1	60	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGTGCTAGTATTTCAAT	-4	True	NA	NA	False	NA	NA	NA	12232780	12235572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12232839_12232904_12233551_12233760_12235271_12235319
95511	chr11	-	2391	16	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	287.095678979829	1	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTATGGGTTGGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	70860785	70833879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835630_70835797_70836053_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
95512	chr2	+	1672	3	ISM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	155	451	-6	0	intron_retention	FALSE	canonical	3	5241	junction_1	402	74	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32851852_32852060_32852135_32852585
95513	chr15	+	4096	5	NIC	ENSMUSG00000022407.11	novel	1932	11	NA	NA	741	15	intron_retention	FALSE	canonical	3	986	junction_1	75.4486580397558	6	69	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTACATTAAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	80846154	80853335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80846988_80847860_80850384_80851312_80851403_80851789_80851967_80852862
95514	chr6	+	8604	13	NNC	ENSMUSG00000009112.5	novel	6925	7	NA	NA	-5	24016	intron_retention	FALSE	non_canonical	0	0	junction_7	102.6470151647	8	35	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATAGCCCCGCCCTCCG	NA	False	NA	NA	False	NA	NA	NA	120813193	120893819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638_120863772_120864303_120871253_120872578_120872795_120874181_120874323_120877118_120877333_120878688_120878746_120893690
95515	chr15	-	3965	15	NIC	ENSMUSG00000023169.16	novel	7266	16	NA	NA	-12	1315	combination_of_known_splicesites	FALSE	canonical	0	0	junction_7	146.193539598739	78	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGGATGTGTTGCGATT	NA	False	NA	NA	False	NA	NA	NA	96540806	96472552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371
95516	chrM	+	1013	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-53	-3	-53	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	274	False	NA	56	True	NA	NA	NA	2697	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
95517	chr13	+	2766	7	NIC	ENSMUSG00000021532.12	novel	2501	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_4	59.418478233253	12	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGTGTGTACTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	68730364	68740455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
95518	chr2	-	7517	35	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39422	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_28	48.0396408544611	1	158	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAAAGGTAACATTCTTT	1592	False	NA	NA	False	NA	NA	NA	59880992	59729718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799572_59799763_59807702_59807897_59808886_59809046_59814125_59814315_59831849_59831901_59836386_59836534_59880905
95521	chr16	-	2935	1	Intergenic	novelGene_3579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTGTTTTTATGCAT	NA	False	NA	NA	False	NA	NA	NA	8380665	8377730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_8377700_8380700
95522	chr15	+	1848	2	Intergenic	novelGene_3264	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22703150	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22704549_22704645
95523	chr19	+	3549	16	NIC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	38	-16	intron_retention	FALSE	canonical	3	728	junction_3	75.8708258965343	132	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTCAGCTCCTCCAGGC	3507	False	NA	NA	False	NA	NA	NA	8919276	8929651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499
95524	chr7	+	2456	4	NNC	ENSMUSG00000064194.11	novel	3112	4	NA	NA	2	275	intron_retention	TRUE	non_canonical	0	0	junction_3	195.192782198068	47	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAATCTCCGAATACATGA	NA	False	NA	NA	False	NA	NA	NA	42827013	42839353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42838749_42838970
95525	chr17	-	4496	9	FSM	ENSMUSG00000024083.17	ENSMUST00000172733.2	4488	9	-10	2	-10	-2	multi-exon	FALSE	canonical	3	36	junction_5	42.6614580154031	42	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTTCATTTCTAATATTT	NA	False	NA	NA	False	NA	NA	NA	64638870	64588016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64615616_64616662_64618165_64618367_64619995_64620114_64638790
95526	chr5	-	555	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	-55	-59	-55	59	mono-exon	FALSE	NA	NA	NA	NA	NA	189	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129205636	129205081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129205100_129205600
95527	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1620	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
95529	chr11	-	1742	1	ISM	ENSMUSG00000059923.14	ENSMUST00000106499.8	2333	4	53426	95	53426	-95	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACCAACTATGT	NA	False	NA	NA	False	NA	NA	NA	115536707	115534965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_115535000_115536700
95530	chr11	-	8100	27	NNC	ENSMUSG00000109408.2	novel	2853	4	NA	NA	11191	12260	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	16	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCCACAGGAGTGCCACC	NA	False	NA	NA	False	NA	NA	NA	119360067	119327353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119327886_119328442_119328638_119328798_119328952_119331011_119334616_119336453_119336592_119336934_119337030_119338058_119338178_119339577_119339700_119340070_119340181_119340549_119340699_119340916_119341064_119343342_119343527_119345263_119345411_119346977_119347133_119349092_119349318_119349557_119349739_119350764_119350888_119352716_119352816_119352924_119353108_119354127_119354300_119354393_119354496_119355832_119355941_119356709_119356921_119357047_119357237_119358048_119358175_119358794_119358900_119359641
95531	chr1	+	3250	8	NIC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-4	2195	intron_retention	FALSE	canonical	3	439	junction_1	58.1461915505799	2	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCACGTTTTATTCACACA	5656	False	NA	NA	False	NA	NA	NA	34478974	34485790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483351_34483438
95532	chr14	+	3299	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	-1176	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	86	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGAACTTGGGGTCTTA	NA	False	NA	NA	False	NA	NA	NA	63359964	63382196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63380105_63380318
95533	chr3	+	2942	19	NNC	ENSMUSG00000068823.11	novel	3849	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	5120.70422553696	1	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACAGTTGCAGCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	102927935	102964448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954221_102954343_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
95534	chr2	+	3039	13	NNC	ENSMUSG00000033059.8	novel	3909	20	NA	NA	50	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	42.4548780079117	6	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGTCACTGTGGTATC	NA	False	NA	NA	False	NA	NA	NA	150628704	150673668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150629031_150643457_150643515_150658687_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
95535	chr5	-	4135	27	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	232.311452465748	3	81	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8120	False	NA	NA	False	NA	NA	NA	100564081	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511732_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530616_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
95536	chr9	+	3475	13	NNC	ENSMUSG00000009741.16	novel	1623	16	NA	NA	-12890	-3	intron_retention	FALSE	canonical	3	25	junction_8	144.75237476463	3	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAAACGTGTCACTCATTT	NA	False	NA	NA	False	NA	NA	NA	113785402	113806264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_113785882_113787665_113787819_113787896_113788008_113788443_113788552_113793619_113793724_113795302_113795358_113795559_113795654_113798393_113798485_113798651_113798767_113799209_113799329_113801818_113801962_113802586_113802639_113804413
95537	chr2	+	4436	5	NNC	ENSMUSG00000080888.4	novel	2055	3	NA	NA	-51230	2169	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4.26468052730799	55	98	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	174877063	174933880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_174877071_174919702_174919909_174928293_174928421_174928631_174928693_174929845
95538	chr12	+	2442	5	Intergenic	novelGene_4306	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	3.80788655293195	7	19	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTCCTTGTATTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	19236622	19250658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_19236734_19246674_19246802_19247002_19247064_19248390_19249565_19249689
95539	chr18	-	6577	33	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	0	6313	intron_retention	FALSE	non_canonical	0	0	junction_1	544.719730651403	2	61	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGCACCGCGAACGGATT	NA	False	NA	NA	False	NA	NA	NA	34784775	34757690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
95540	chr11	-	2830	4	Antisense	novelGene_ENSMUSG00000020149.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	126	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGCCGCCGGCGAACC	NA	False	NA	NA	False	NA	NA	NA	20176856	20151438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_20151657_20172908_20173178_20174364_20174497_20174645
95541	chr11	-	4949	1	Intergenic	novelGene_2267	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAGCCTGAATGCCTAG	NA	False	NA	NA	False	NA	NA	NA	51560821	51555872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_51555900_51560800
95542	chrM	-	2111	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9282	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAAAAGCTGTTTTGTTA	9986	False	NA	-1	True	NA	NA	NA	3710	1599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1600_3700
95543	chr11	-	3053	12	NNC	ENSMUSG00000025155.16	novel	1930	14	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_5	259.15737584438	14	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	NA	False	NA	NA	NA	120687221	120680026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120684773_120685093_120685145_120685728_120685838_120686302
95544	chr12	+	4051	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	-66	21	-66	-21	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	285	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAGAATTTCTAAATGTG	NA	False	NA	NA	False	NA	NA	NA	3285437	3291389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
95545	chr7	-	662	1	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTGCTTGTCT	NA	False	NA	NA	False	NA	NA	NA	51397035	51396373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51396400_51397000
95546	chr16	-	564	1	Intergenic	novelGene_3769	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95547	chr8	-	6092	14	NNC	ENSMUSG00000045636.17	novel	6548	14	NA	NA	-487	-382	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_13	31.6824107026122	85	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAATATTCAATGTAAGA	NA	False	NA	NA	False	NA	NA	NA	41587250	41444470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586940
95548	chr14	-	2560	2	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	628	-13737	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	0	2	68	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGGTCTCCGTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	90322700	90315935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_90318195_90322399
95549	chr14	+	4896	10	Fusion	ENSMUSG00000040840.8_ENSMUSG00000091306.3	novel	968	6	NA	NA	3229	-926	intron_retention	FALSE	non_canonical	0	0	junction_1	0	89	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCCCGTGTGTGCGGAT	NA	False	NA	NA	False	NA	NA	NA	54881637	54891138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_54881725_54881906_54882016_54882142_54882252_54882670_54882814_54883061_54883198_54883904_54884061_54884159_54884296_54885546_54889316_54890670_54890773_54890989
95550	chr11	-	1158	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	1	-2	0	2	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	36	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	NA	False	NA	NA	NA	33113076	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
95552	chr4	+	4821	16	Fusion	ENSMUSG00000067919.9_ENSMUSG00000063245.12	novel	387	3	NA	NA	-330205	-124	multi-exon	FALSE	non_canonical	0	0	junction_1	25.7176117778373	2	136	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTCAATGTGACAAATGATT	NA	False	NA	NA	False	NA	NA	NA	146365212	147145127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146365259_146428065_146428160_146516853_146516986_146697966_146698060_146700005_146700119_146739355_146739414_146740256_146740384_146741834_146741973_146742638_146742707_146802658_146803245_146803916_146804621_146805042_146805189_146817994_146818509_146907047_146908380_147075357_147075871_147144970
95553	chrX	+	8484	2	Antisense	novelGene_ENSMUSG00000050332.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	109	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGACGTCCGTGATATGATT	NA	False	NA	NA	False	NA	NA	NA	94463923	94488464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_94472206_94488262
95554	chrM	-	1206	1	Antisense	novelGene_ENSMUSG00000064351.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAATTCTGCTCGAATTAA	9530	False	NA	NA	False	NA	NA	NA	6658	5452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_5500_6700
95555	chr15	-	2981	4	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9799	False	NA	NA	False	NA	NA	NA	22705091	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700235_22702300_22704588_22704680_22704891_22705023
95556	chr2	-	3682	28	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	61	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	71.7863389764991	2	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCCTGCAGTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	103591479	103551602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560864_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
95557	chr11	-	6342	45	NNC	ENSMUSG00000020288.14	novel	3583	9	NA	NA	1355	75647	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	87	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGACAATCCAGCTGCCA	NA	False	NA	9	True	NA	NA	NA	23439722	23362234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_23362420_23364737_23364815_23367460_23367502_23367646_23367772_23368976_23369131_23370038_23370143_23371095_23371152_23371243_23371365_23376059_23376244_23376643_23376794_23379297_23379365_23382244_23382390_23382472_23382529_23382617_23382697_23383179_23383273_23385904_23386078_23388864_23389020_23391098_23391179_23394144_23394197_23394301_23394400_23396429_23396496_23396577_23396653_23396741_23396789_23396914_23396982_23399210_23399292_23401993_23402081_23402517_23402686_23402788_23402866_23404524_23404676_23407798_23407845_23407929_23408037_23408114_23408158_23409121_23409227_23410559_23410710_23414216_23414852_23417145_23417302_23418802_23418879_23420282_23420414_23421479_23421588_23422947_23423055_23434101_23434180_23436815_23436957_23437076_23437222_23438207_23438367_23438581
95558	chr14	+	2966	7	NIC	ENSMUSG00000040618.8	novel	2417	9	NA	NA	-58	-5	intron_retention	FALSE	canonical	3	1534	junction_4	87.5323749630196	16	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCACTTCCCTGTGTCTG	8956	False	NA	NA	False	NA	NA	NA	55777787	55786386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
95559	chr11	-	6895	2	Intergenic	novelGene_2245	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	70	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTGAATTATGACACAA	NA	False	NA	NA	False	NA	NA	NA	31937007	31930036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_31930440_31930515
95560	chr11	-	1345	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	152408	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
95561	chr2	-	3621	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	25	-50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	378.560712459377	1	125	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTGTGTCTTAATG	NA	False	NA	NA	False	NA	NA	NA	94268456	94242076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260190_94268317
95562	chr11	-	3027	16	NNC	ENSMUSG00000040667.12	novel	2450	17	NA	NA	0	-1	intron_retention	FALSE	canonical	1	8	junction_7	286.323406890414	814	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAATTTGACTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	70860787	70833908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835565_70835670_70836188_70838527_70838630_70840098_70840369_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
95563	chr10	-	2893	3	NIC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	180	-16	intron_retention	FALSE	canonical	3	770	junction_2	7	24	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTAGAGGTGTAATG	NA	False	NA	NA	False	NA	NA	NA	5755420	5749175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_5751243_5751868_5752533_5755258
95564	chrUn_MU069435v1	-	1333	1	Intergenic	novelGene_4782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	96	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGCAAATTTTAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31129	29796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_29800_31100
95565	chr15	-	5122	4	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	118	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAACAAGACCGTTTTCT	9795	False	NA	NA	False	NA	NA	NA	22705095	22699827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700218_22700266_22703206_22703255_22704574_22704620
95567	chr2	-	3931	8	Fusion	ENSMUSG00000078868.4_ENSMUSG00000083817.2_ENSMUSG00000078869.3	novel	1050	3	NA	NA	-19	174377	multi-exon	TRUE	non_canonical	0	0	junction_1	175.313480162053	1	48	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGTTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	177016119	176742888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_176743133_176915493_176918442_176918525_176918820_176919073_176919083_176957103_176957402_176958542_176958604_176969516_176969572_177016097
95568	chr16	+	5119	19	Fusion	ENSMUSG00000022516.11_ENSMUSG00000022517.18	novel	3138	17	NA	NA	-3	2	intron_retention	TRUE	canonical	0	0	junction_16	117.936803018281	100	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTTCTGAGTGCCATG	2940	False	NA	NA	False	NA	NA	NA	4704128	4758885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759_4755525_4755569_4757158_4757241_4757503_4758059
95569	chr15	+	7361	34	NNC	ENSMUSG00000022142.9	novel	7832	35	NA	NA	-4	-321	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	71.4582978941194	19	107	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGTTTTTTGAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	8138815	8190410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146_8164210_8165241_8165390_8166116_8166184_8167337_8167454_8169334_8169433_8170712_8170844_8172449_8172644_8173534_8173674_8174971_8175108_8176626_8176781_8176981_8177087_8177780_8177936_8180241_8180372_8181196_8181311_8182599_8182721_8183123_8183235_8184399_8184537_8186169_8186277_8187109
95570	chr9	+	1159	8	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1820	147	1802	-147	3prime_fragment	FALSE	canonical	3	16882	junction_1	1498.71829594899	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082476	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
95571	chr1	+	4464	23	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	73.3177872953371	1	59	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCACTTTGTCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	128031070	128165473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124811_128138953_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
95572	chr8	-	7414	4	NIC	ENSMUSG00000035569.18	novel	8481	13	NA	NA	4138	489	intron_retention	FALSE	canonical	3	382	junction_1	11.4697670227235	339	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTACATGGCACTGTCC	NA	False	NA	NA	False	NA	NA	NA	123622381	123610071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_123611076_123612388_123612482_123614052_123614366_123616377
95573	chr11	-	6610	22	NNC	ENSMUSG00000018501.18	novel	6328	28	NA	NA	6018	34574	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	199.60209851709	2	164	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCGTCTGACGCGTCCTC	NA	False	NA	NA	False	NA	NA	NA	62229709	62172677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62172713_62174420_62174531_62174953_62174996_62175828_62175884_62176647_62176712_62182949_62183043_62199865_62200018_62203839_62204003_62204833_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224845_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684
95574	chr7	+	1451	7	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3046.9790321271	22	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497155_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
95575	chr13	-	4600	8	Antisense	novelGene_ENSMUSG00000055763.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	40	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGAAAGGCACCCGGAAG	NA	False	NA	NA	False	NA	NA	NA	66256542	66044986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_66045091_66052246_66052380_66052578_66052633_66090896_66091039_66092496_66092669_66093676_66093904_66094994_66096554_66254333
95577	chr9	+	2488	9	NNC	ENSMUSG00000032349.14	novel	2782	8	NA	NA	-18	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	192.749189362757	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTACCCGTGCTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	77824697	77891790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946_77890761_77890991
95578	chr16	+	2617	10	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-2	intron_retention	FALSE	canonical	3	7	junction_8	661.980884435514	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930566_22930647_22931100
95580	chr16	+	3416	17	NIC	ENSMUSG00000025616.15	novel	3205	18	NA	NA	0	-1	intron_retention	FALSE	canonical	3	153	junction_5	31.8570415096882	25	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATGTTCACCTAAGTAAA	NA	False	NA	NA	False	NA	NA	NA	87251914	87280197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
95581	chr11	-	2214	9	NNC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-126	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	79.5784793458634	2	49	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAATGGCTGTGGAGCTTG	4570	False	NA	NA	False	NA	NA	NA	94544623	94535830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538568_94538816_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
95583	chr8	-	1284	4	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	3	-371	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3636.96249942479	2	64	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCCTGCCCTTATTAACT	NA	False	NA	NA	False	NA	NA	NA	46664064	46660204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661576_46662071_46662546_46663848
95584	chr8	+	4635	16	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-11	-5	intron_retention	FALSE	non_canonical	0	0	junction_15	262.12622913398	10	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGAGGCTCACTTG	5066	False	NA	NA	False	NA	NA	NA	107329999	107396873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037_107396156_107396203
95586	chr10	-	3770	20	Antisense	novelGene_ENSMUSG00000040054.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	219	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAACATGGCCGGCGGG	NA	False	NA	NA	False	NA	NA	NA	127959109	127932758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127932926_127944760_127944901_127946623_127947216_127948448_127948635_127949326_127949549_127950200_127950655_127950894_127950957_127951929_127952037_127952172_127952280_127952417_127952624_127954421_127954523_127954821_127954888_127955136_127955359_127955489_127955746_127956977_127957195_127957459_127957527_127957669_127957837_127957929_127957995_127958170_127958317_127958889
95587	chr17	-	4694	1	Intergenic	novelGene_8	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	120	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGAAGACCTGCTACAT	NA	False	NA	NA	False	NA	NA	NA	6848612	6843918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_6843900_6848600
95588	chr2	+	2999	7	Antisense	novelGene_ENSMUSG00000037773.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	105	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGCCTGAGCTTGCGCTA	NA	False	NA	NA	False	NA	NA	NA	130260151	130266250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_130261253_130261548_130261811_130263809_130264057_130264144_130264298_130264387_130264624_130264731_130264813_130265331
95589	chr13	+	1116	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-13	35446	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAGAAAGAAATGCAGGTA	7949	False	NA	NA	False	NA	NA	NA	74554514	74590911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74555433_74590713
95590	chr11	-	3053	20	NNC	ENSMUSG00000020923.18	novel	4580	20	NA	NA	231	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	277.052051671126	11	54	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGACTTTCGTCTGGTC	9397	False	NA	NA	False	NA	NA	NA	102207270	102195392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102195840_102197084_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200596_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
95591	chr4	+	2422	7	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-104017	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.6404776212465	13	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147533716	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147534439_147534577_147578832_147578927_147639766_147639810_147665698_147665826_147667290_147667431_147667838
95592	chrX	-	3492	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	12	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	325.116558882355	3	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTCTGAAACAAGCATTAA	NA	False	NA	NA	False	NA	NA	NA	93256245	93232328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241002_93243326_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
95593	chr11	+	2054	6	ISM	ENSMUSG00000010554.15	ENSMUST00000010698.13	2073	11	25222	-791	-7272	791	3prime_fragment	FALSE	canonical	2	3	junction_2	200.878470722972	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACTATTGATCCTGTT	NA	False	NA	NA	False	NA	NA	NA	74686877	74709511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_74686951_74693718_74693839_74694656_74694727_74696078_74696169_74707695_74707870_74707984
95594	chr5	-	3648	5	NIC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	1717	-493	intron_retention	FALSE	canonical	3	208	junction_1	193.287835882137	3	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAACAATAAACCACAGCA	NA	False	NA	NA	False	NA	NA	NA	121043867	121034811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121040118_121043658
95595	chr8	+	3880	11	ISM	ENSMUSG00000036779.13	ENSMUST00000118952.8	4597	13	44094	4	-1977	2	3prime_fragment	FALSE	canonical	3	98	junction_4	15.0465942990432	123	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTTTAGTTTGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	88969935	88986346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_88969993_88972225_88972273_88972992_88973114_88974136_88974245_88975732_88975862_88977267_88977482_88978582_88978710_88978809_88978914_88979013_88979202_88981736_88981902_88983726
95596	chr11	-	1293	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	129	211	0	12	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	13	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTTATTTAACTCTCAT	NA	False	NA	NA	False	NA	NA	NA	33113077	33102497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
95597	chr8	+	4053	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-3341	-2173	intron_retention	FALSE	canonical	0	0	junction_1	869.259762756446	4	75	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCAGCCTGAGGCTTTA	NA	False	NA	NA	False	NA	NA	NA	111756434	111782123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111756549_111759816_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
95598	chr17	-	808	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	9	941	9	-3	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	3	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTCATTTTCTTACACTG	NA	False	NA	NA	False	NA	NA	NA	15718551	15696223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
95599	chr16	+	5288	20	Fusion	ENSMUSG00000022516.11_ENSMUSG00000022517.18	novel	3138	17	NA	NA	0	2	intron_retention	FALSE	canonical	3	83	junction_12	141.011973716071	1610	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTTCTGAGTGCCATG	2927	False	NA	NA	False	NA	NA	NA	4704115	4758885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4744172_4744239_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759_4757158_4757241_4757503_4758059
95600	chr17	-	6616	5	NIC	ENSMUSG00000024045.7	novel	3260	12	NA	NA	-1	3236	intron_retention	FALSE	canonical	3	462	junction_3	54.0670879556131	19	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAGGAGAGCCCTAAACC	NA	False	NA	NA	False	NA	NA	NA	32540120	32529591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32529646_32529926_32530069_32531259_32534463_32534628_32537784_32540058
95601	chr16	+	4008	3	NIC	ENSMUSG00000022686.15	novel	4258	4	NA	NA	-35	-13	combination_of_known_splicesites	TRUE	canonical	1	7	junction_2	33	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTTAAAAAAATCATCAGT	NA	False	NA	NA	False	NA	NA	NA	19579113	19591200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_19579228_19579390_19579578_19587493
95602	chr6	-	3585	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	-9984	-26	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_14	251.475563790348	1	129	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAATAAAATAATTATAGTA	NA	False	NA	NA	False	NA	NA	NA	30519766	30481252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30519541
95604	chr11	-	9890	27	NNC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	5	9298	intron_retention	FALSE	non_canonical	0	0	junction_1	59.4864113566676	283	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCGCGGGGTGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	86148386	86092208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86092376_86097775_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147247_86147324_86148029
95605	chr4	+	5387	2	Genic_Genomic	ENSMUSG00000083081.2	novel	747	1	NA	NA	-580	4112	multi-exon	FALSE	non_canonical	0	0	junction_1	0	85	50	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGAAGACTCAGGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	145181622	145187061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_145183846_145183897
95606	chrM	+	1564	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-287	101	-287	-101	mono-exon	FALSE	NA	NA	NA	NA	NA	100	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACCCTCACACACACGAG	2	True	NA	NA	False	NA	NA	NA	9879	11443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11400
95607	chr15	-	1453	8	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	486	245	-337	-241	internal_fragment	FALSE	canonical	3	23824	junction_3	2722.36687986234	10	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGCCATGGTCGCTTCC	4004	False	NA	NA	False	NA	NA	NA	79967121	79962236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590
95608	chr5	+	387	1	Intergenic	novelGene_935	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	123	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
95609	chr7	+	3881	6	FSM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	-47	0	-32	0	multi-exon	FALSE	canonical	3	88	junction_1	5.30659966456864	110	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGGGGTCGTCTG	NA	False	NA	NA	False	NA	NA	NA	127836481	127844272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_127837762_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
95610	chr3	+	4069	20	NNC	ENSMUSG00000068823.11	novel	3827	19	NA	NA	13	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5796.00265346754	2	84	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAGACACTAGCACCTA	NA	False	NA	NA	False	NA	NA	NA	102927992	102965489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102928123_102936104_102936522_102945999_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952142_102954100_102954180_102954378_102954499_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
95611	chr1	+	3049	25	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-4028	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	232.035733449015	5	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATACTCCTCCCTTCCCA	910	False	NA	NA	False	NA	NA	NA	171918789	171949600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942626_171946504_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
95612	chr6	-	2681	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	0	-50	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_14	268.725937508092	11	14	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCCAGATGGTAAAGTCAT	3048	False	NA	NA	False	NA	NA	NA	71885734	71857676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861606_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71872023_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
95613	chr7	-	551	6	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6843.24079950428	39	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128105_99128558_99128678_99129082_99129271_99131519_99131562_99131776_99131908_99132798
95614	SIRV6	+	1102	6	NNC	SIRV6A	novel	574	8	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	9951.5850074247	1	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	1020	11824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1535_1640_1703_10706_10819_11031_11109_11205
95615	chr15	+	3611	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-4050	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	228.172922699126	1	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGGTTAATGTTGCAGT	NA	False	NA	NA	False	NA	NA	NA	101990408	102005604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687_102003994_102004043
95616	chr14	-	2456	9	ISM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	11169	-370	11098	370	3prime_fragment	FALSE	canonical	3	477	junction_8	24.8919540213299	69	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCAGGCTGGGTGGGGAG	8057	False	NA	NA	False	NA	NA	NA	20387020	20369549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949
95617	chrM	+	844	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	45	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14722_15021
95619	chr7	+	1097	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	142	-7	142	7	mono-exon	FALSE	NA	NA	NA	NA	NA	12	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396536	51397633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
95620	chr11	+	1756	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	43	0	0	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	1938	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	95557825	95571599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
95621	chr1	+	10849	3	Intergenic	novelGene_364	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	189	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGAGAGGCCCATTGGAC	NA	False	NA	NA	False	NA	NA	NA	46990491	47151253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_46994868_47035013_47036133_47145899
95622	chr9	+	8277	20	NNC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-3403	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	31.6141908596743	202	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGAATGTGTGCTCCCTC	NA	False	NA	NA	False	NA	NA	NA	110358261	110447675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_110358383_110376272_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110419455_110419505_110421466_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
95623	chr11	+	4625	24	NNC	ENSMUSG00000011256.17	novel	816	4	NA	NA	257	-1610	intron_retention	FALSE	non_canonical	0	0	junction_23	140.293117401283	3	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCACTTCTGTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	45947141	46036560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45947269_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027289_46028190_46028269_46028366_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618_46036322_46036377
95624	chr7	+	3054	16	NNC	ENSMUSG00000030494.14	novel	3046	16	NA	NA	-16	-8	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_15	25.1496852200314	7	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTTAATTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	35033738	35091702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179_35090727_35091024
95625	chr4	+	2709	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33220	-1720	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	271.190380032593	9	87	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTACGGAATCTTAATA	NA	False	NA	NA	False	NA	NA	NA	146500259	146553029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500373_146502756_146502850_146533486_146533556_146547961_146548020_146548860_146548988_146550437_146551193_146551535
95627	chrX	-	6204	5	Intergenic	novelGene_3986	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTAAACATAATAAAAGCAA	NA	False	NA	NA	False	NA	NA	NA	97075865	97015303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_97015370_97015433_97015852_97015894_97018160_97018199_97018379_97072589
95628	chr4	+	1656	2	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082082.2	novel	1575	3	NA	NA	3022	-232	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAAAGAGTATCTGGC	NA	False	NA	72	True	NA	NA	NA	145176331	145265526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145176423_145263961
95629	chr8	+	3422	13	NNC	ENSMUSG00000060038.15	novel	1333	9	NA	NA	19	5525	intron_retention	FALSE	non_canonical	0	0	junction_2	127.234909605117	99	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGACTTGCTCGAGTGTA	NA	False	NA	NA	False	NA	NA	NA	85798404	85807316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85798683_85799080_85799441_85799581_85800046_85800131_85800229_85800309_85800397_85800840_85801126_85801362_85801489_85801562_85801973_85802450_85802565_85802650_85802914_85806209_85806339_85806420_85806855_85806941
95632	chr6	-	2949	18	NNC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	45	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	225.753379233388	2	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	1	True	NA	NA	False	NA	NA	NA	6217073	6041217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_6042262_6042550_6042650_6042747_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110022_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
95633	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
95634	chr16	-	497	1	Intergenic	novelGene_3832	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGAATGCGAGTGCCT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95635	chr1	-	830	5	NNC	ENSMUSG00000033845.14	novel	4203	5	NA	NA	-50097	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	933.140497192143	2	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCACTGCTCAGGTCTT	4183	False	NA	NA	False	NA	NA	NA	4906059	4846602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854274_4906041
95636	chr4	+	3675	6	Intergenic	novelGene_2029	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_5	30.3354578010618	2104	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCCATCCGCTACG	NA	False	NA	NA	False	NA	NA	NA	146223568	146256592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146223715_146240246_146240316_146250678_146250737_146251579_146251707_146253158_146255780_146255938
95637	chr4	+	2489	6	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	1250	5	NA	NA	-18	-8	multi-exon	TRUE	non_canonical	0	0	junction_1	36.3020660569065	3	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAAGTTTGCTTTGGT	2351	False	NA	NA	False	NA	NA	NA	147445741	147669647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147445910_147661528_147661587_147665698_147665826_147666658_147666774_147667290_147668002_147668337
95638	chr4	-	951	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-66	117	-66	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTGGCATTGCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	91740972	91740021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91740000_91741000
95639	chr11	-	1612	7	NNC	ENSMUSG00000020444.20	novel	1078	8	NA	NA	47	-3	intron_retention	FALSE	canonical	3	5	junction_6	309.454717563365	58	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTATAGTGTCACAGCCC	1657	False	NA	NA	False	NA	NA	NA	59082591	59074703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59075014_59075261_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082359
95640	chr6	+	881	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	-106	-388	-106	388	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAACCAAAACACCAAAT	NA	False	NA	NA	False	NA	NA	NA	116150591	116151472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_116150600_116151500
95642	chr4	+	1975	21	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	0	1	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_19	205.622050130816	787	0	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTGTAGTAGTGTGT	-8	True	NA	NA	False	NA	NA	NA	34614960	34660164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34657456_34657571_34659490_34659555_34659983
95643	chr4	-	8456	5	Antisense	novelGene_ENSMUSG00000095460.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	61	187	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATGGCGGAACTTCCAG	NA	False	NA	NA	False	NA	NA	NA	146806334	146426564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146426709_146597235_146597333_146797296_146800081_146800232_146803460_146804130
95644	chr6	-	3696	13	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	95.9653800423187	220	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	112673609	112603375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112605486_112621548_112621712_112626534_112626799_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
95646	chr4	+	3247	2	Intergenic	novelGene_2011	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTCTAAGCCAATTAATAT	NA	False	NA	NA	False	NA	NA	NA	143710527	143713832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_143710651_143710708
95648	chr13	+	4802	6	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-36504	2300	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	131.033430848772	1	126	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTTATAGTAGTCAATGTT	1220	False	NA	NA	False	NA	NA	NA	62126914	62201100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62126970_62135744_62135872_62136049_62136111_62194994_62195122_62195306_62195368_62196729
95649	chr14	+	4137	18	NIC	ENSMUSG00000021911.17	novel	4413	18	NA	NA	-8	18	combination_of_known_junctions	FALSE	canonical	1	134	junction_15	101.735663996062	148	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTCCTTTGCCAGCACTG	NA	False	NA	NA	False	NA	NA	NA	31923919	32019525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_31924143_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
95650	chr2	-	2933	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-54169	1704	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	251.786064392417	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	NA	False	NA	NA	False	NA	NA	NA	177012998	176954742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176957402_176958542_176958604_176958795_176958923_177012912
95652	chr7	-	4733	4	NNC	ENSMUSG00000030980.18	novel	3253	4	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	278.6000717875	3	92	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAAATATAGTCTTTTGA	NA	False	NA	NA	False	NA	NA	NA	118454892	118441446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118445318_118451624_118452095_118452218_118452564_118454845
95653	chr10	-	1677	1	Genic_Genomic	ENSMUSG00000034024.9	novel	NA	NA	NA	NA	2228	4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTGATCTGTATAT	8354	False	NA	NA	False	NA	NA	NA	116888578	116886901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_116886900_116888600
95655	chr11	+	5635	1	Intergenic	novelGene_2473	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	130	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGAAGAATCTGACCG	NA	False	NA	NA	False	NA	NA	NA	97958202	97963837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_97958200_97963800
95656	chr11	-	1111	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-36	-73	36	mono-exon	FALSE	NA	NA	NA	NA	NA	8	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAGAGGCCCTATCCCA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20285000_20286100
95657	chr7	+	3058	16	NNC	ENSMUSG00000030494.14	novel	689	2	NA	NA	19209	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	34.4705993887867	5	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTAATTTTTCTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	35052963	35091705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_35053058_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179_35090722_35091014
95658	chr11	-	3016	14	NIC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	0	-2	intron_retention	FALSE	canonical	3	678	junction_8	76.7679204451147	33	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTGACTTTGCTTTACAA	NA	False	NA	NA	False	NA	NA	NA	70860799	70833904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70834149_70834704_70834824_70834937_70835565_70835670_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
95659	chr1	-	8160	23	FSM	ENSMUSG00000005886.15	ENSMUST00000006037.13	4897	23	83	-3346	29	-24	multi-exon	FALSE	canonical	3	44	junction_3	7.80826538127789	128	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACATGGCTTTAGAGATT	NA	False	NA	NA	False	NA	NA	NA	13444224	13209352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13212997_13217098_13217189_13218540_13218740_13219154_13219333_13220913_13221143_13222602_13222681_13223020_13223300_13226593_13226760_13230384_13230515_13232296_13232513_13235119_13235327_13237119_13237331_13244302_13245573_13247297_13247446_13250704_13250849_13251439_13251542_13254398_13254588_13256956_13257135_13260310_13260415_13291530_13291704_13294832_13294938_13356192_13356250_13444161
95660	chr13	-	2651	21	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	294.579407800342	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCATGGTACTTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	6698761	6631213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664913_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
95661	chr11	+	1727	8	FSM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	34	-870	34	-4	multi-exon	FALSE	canonical	3	3141	junction_5	166.267181097786	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3573	False	NA	NA	False	NA	NA	NA	52265123	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
95662	chr4	+	3319	4	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	2	2157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	236.735201344362	39	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTTTCAGTT	2379	False	NA	NA	False	NA	NA	NA	147445769	147477618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147445915_147469673_147469759_147472778_147472906_147474656
95663	chr17	-	1444	8	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-325	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	4594.8770497197	62	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45882833	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879254_45879489_45879783_45879838_45881327_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
95664	chr5	-	4011	28	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-1	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	227.969675262975	2	84	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTCTCCACATCAATC	8166	False	NA	NA	False	NA	NA	NA	100564035	100509553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513638_100513715_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530616_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
95665	chr17	+	3648	16	ISM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	-45	18	-10	-18	intron_retention	FALSE	canonical	3	638	junction_1	459.882429419617	3	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATTCTGGCCGGGCAGT	1402	False	NA	NA	False	NA	NA	NA	56611302	56630468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
95666	chrM	-	822	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-72	-231	-72	231	mono-exon	FALSE	NA	NA	NA	NA	NA	184	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTAAAGTTGAGAAGGAT	19	True	NA	-3	True	NA	NA	NA	14142	13320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_13300_14100
95667	chrX	-	3479	25	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-12597	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	183.077833326581	1	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	NA	False	NA	NA	NA	59205657	59101315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172483_59174652_59174776_59175403_59175538_59178967_59179118_59198259_59198351_59200962_59201078_59205586
95669	chr18	-	830	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	115	20	104	-20	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	7538	False	NA	NA	False	NA	NA	NA	61392928	61392098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61392900
95670	chr16	-	1782	6	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-1810	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	475.727653179842	2099	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTTCTCAAGACTGGT	8675	False	NA	NA	False	NA	NA	NA	33787373	33776973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781783_33782611_33784141_33784296_33787195
95671	chr17	+	1086	2	Intergenic	novelGene_88	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	146	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGTAAAATAATAGTA	NA	False	NA	NA	False	NA	NA	NA	23095194	23097166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
95672	chr4	-	2444	16	NNC	ENSMUSG00000028809.17	novel	2940	17	NA	NA	2	-162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	345.613940048077	1	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCCCTGCCCGGGTAT	NA	False	NA	NA	False	NA	NA	NA	135080443	135051240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068166_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
95673	chr7	-	2965	5	ISM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	6336	13886	-61	-10611	internal_fragment	FALSE	canonical	3	110	junction_1	9.51314879522022	1	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCATTAACAGAGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	92312806	92306636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_92308075_92309005_92309097_92309207_92309389_92310166_92311285_92312669
95675	chr3	-	4554	10	NIC	ENSMUSG00000019338.14	novel	4632	9	NA	NA	16	-3	combination_of_known_junctions	FALSE	canonical	3	16	junction_9	41.4428060444694	2	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCCCCATTCAGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	94922513	94914150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916229_94916386_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922421
95676	chr17	+	2168	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	9	1	intron_retention	FALSE	non_canonical	0	0	junction_5	1436.76483809982	4	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135277	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13139294_13139682_13139754_13140991_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
95677	chr3	-	7776	2	NIC	ENSMUSG00000028078.15	novel	8042	14	NA	NA	131	2	intron_retention	FALSE	canonical	3	231	junction_1	0	163	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCATGGGGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	86706336	86693463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_86701221_86706317
95678	chr4	+	3877	6	Fusion	ENSMUSG00000084350.2_ENSMUSG00000078502.11	novel	2413	3	NA	NA	-7	1183	multi-exon	FALSE	non_canonical	0	0	junction_1	30.5195019618604	2	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCCATCCGCTACGGC	NA	False	NA	NA	False	NA	NA	NA	145311765	145557695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312127_145541336_145541383_145551778_145551837_145552678_145552806_145554256_145556878_145557031
95679	chr19	+	4034	10	Antisense	novelGene_ENSMUSG00000025077.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	46	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTTTCAGCACACCCAGA	6953	False	NA	NA	False	NA	NA	NA	56517638	56536481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_56518097_56519649_56519793_56525561_56525717_56526730_56526900_56528613_56528724_56529936_56530056_56531064_56531170_56532446_56534079_56535068_56536135_56536404
95680	chr12	-	2918	5	Intergenic	novelGene_4314	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	58.9194365214061	54	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAACTCCTTGTATTTTT	NA	False	NA	NA	False	NA	NA	NA	21817696	21806843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_21808228_21808311_21809538_21810872_21810934_21811135_21811263_21817576
95681	chr17	+	2810	10	NNC	ENSMUSG00000019432.16	novel	2848	10	NA	NA	445	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	754.905063117865	7	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACAACCGTGTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	35462087	35472654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468925_35469895_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
95682	chr5	-	4255	21	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	0	-125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	187.420223028359	6	106	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGCAGAAGGGCCCATA	NA	False	NA	NA	False	NA	NA	NA	31337253	31313473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331302_31331367_31331434_31331575_31331840_31337227
95683	chr17	-	4447	4	NNC	ENSMUSG00000066057.8	novel	1853	4	NA	NA	6	18271	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	11.5854314646552	103	7	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGACTGGTTATTTGATC	NA	False	NA	NA	False	NA	NA	NA	95142220	95122214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_95126373_95127763_95127825_95128042_95128170_95142119
95684	chr11	-	782	7	Genic_Genomic	ENSMUSG00000040365.15	novel	3432	6	NA	NA	33	6044	multi-exon	FALSE	non_canonical	0	0	junction_1	0	120	1	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCGGCCTCCGCCGGA	NA	False	NA	NA	False	NA	NA	NA	48707025	48691186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_48691398_48692487_48692662_48693099_48693246_48694228_48694325_48694682_48694794_48694980_48694991_48706991
95685	chr1	-	2984	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-23	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1018.45087441356	2	129	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTGTGTGTATGTGTGT	NA	False	NA	NA	False	NA	NA	NA	20890507	20873190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879943_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883334_20884622_20884732_20884922_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
95686	chrM	-	393	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTACTGAGAAGCCCCCT	-6	True	NA	NA	False	NA	NA	NA	15051	14658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14700_15100
95687	chr6	+	4163	27	NNC	ENSMUSG00000063870.13	novel	6697	39	NA	NA	-6857	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	167.153160287453	3	137	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATCTGGTTCTGTGTGGG	215	False	NA	NA	False	NA	NA	NA	125083646	125107554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_125083700_125084430_125084623_125085243_125085445_125085621_125085760_125086014_125086137_125086256_125086429_125086741_125086884_125086985_125087102_125087215_125087334_125090427_125090553_125090862_125091101_125091253_125091430_125097167_125097349_125097432_125097520_125097606_125097696_125097802_125097937_125098235_125098381_125098478_125098645_125098894_125098993_125099085_125099246_125099439_125099512_125099780_125099919_125100302_125100412_125100511_125100645_125105754_125105783_125105892_125105951_125106782
95689	chr13	+	1728	6	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	46	462	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	28.9316435758496	11	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61952125	62009951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62008121_62009044_62009301_62009364
95690	chrM	+	952	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	3	2	3	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	360	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATATGTCTGATAAAAG	1	True	NA	112	True	NA	NA	NA	2753	3705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
95691	chr13	+	3347	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-32	1311	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	98.973165555114	700	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCAGGAACCTTGACTTA	NA	False	NA	NA	False	NA	NA	NA	66261261	66271961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66264730_66264842_66267450_66267578_66267777_66267839_66269026
95692	chr4	-	2654	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	29	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	107.652691749052	1	67	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994018	146912352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913241_146914165_146914404_146976195_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146989292_146989364_146993792
95693	chr12	+	1442	6	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	8	820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1506.03312048573	2	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9267	False	NA	NA	False	NA	NA	NA	100165795	100173574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171935_100172384_100172493_100172658
95694	chr7	-	3154	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.188852574577511	5	38	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAAGGGCGGGGGCCTGC	9279	False	NA	NA	False	NA	NA	NA	13045345	13012751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012856_13014064_13014148_13016378_13016469_13019182_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030319_13030643_13030720_13032659_13032750_13032958_13033063_13034182_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040296_13041443_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
95695	chr16	+	2770	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	14	junction_1	671.416450498496	19	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926631_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
95696	chr5	-	7087	47	FSM	ENSMUSG00000029547.11	ENSMUST00000072607.9	7102	47	12	3	12	0	multi-exon	TRUE	canonical	0	0	junction_11	49.3038493955329	188	61	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTGTGGTGTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	139761416	139737039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_139737389_139737464_139737575_139737692_139737785_139737975_139738047_139738466_139738581_139739215_139739329_139739828_139739957_139740661_139740855_139740931_139741066_139741631_139741756_139741889_139742117_139742198_139742287_139742815_139742947_139743342_139743467_139743543_139743731_139743849_139743991_139744184_139744345_139744890_139745146_139745501_139745627_139745837_139745937_139746408_139746556_139747037_139747200_139747777_139747890_139748082_139748251_139748368_139748474_139748562_139748743_139749759_139749910_139749982_139750163_139750422_139750553_139750798_139750997_139751991_139752053_139752184_139752277_139753157_139753255_139753475_139753634_139754173_139754252_139754618_139754740_139755053_139755163_139755817_139755995_139756804_139756947_139757044_139757191_139757291_139757479_139757570_139757677_139757771_139757932_139758110_139758249_139758352_139758550_139760042_139760334_139761086
95697	chr2	+	2553	9	NNC	ENSMUSG00000054766.14	novel	2834	8	NA	NA	19	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6406.28464746728	88	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29956486	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29956533_29956786_29956906_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
95698	chr2	+	4114	6	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	8	2803	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_3	118.732640836461	2	94	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177401088	177415068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
95699	chr14	-	6049	12	NNC	ENSMUSG00000022185.20	novel	4048	18	NA	NA	-10	24	intron_retention	FALSE	non_canonical	0	0	junction_7	121.324031672035	1	108	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGAGGGAAGAGGAAGAAG	2918	False	NA	NA	False	NA	NA	NA	54924100	54883171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54883201_54883907_54884061_54884159_54884291_54885544_54889316_54899624_54899741_54901043_54901263_54901828_54902828_54902902_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
95700	chr9	+	3682	12	ISM	ENSMUSG00000032394.7	ENSMUST00000217371.2	3183	14	36195	-1159	-3331	1159	3prime_fragment	FALSE	canonical	3	70	junction_9	15.3639053230896	69	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGAGGTTTTTTTTTTTT	2190	False	NA	NA	False	NA	NA	NA	65084688	65094313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_65084822_65085147_65085279_65085657_65085796_65087322_65087482_65088417_65088584_65088806_65089055_65089237_65089403_65089983_65090176_65090281_65090387_65091054_65091194_65091314_65091523_65092415
95701	chr4	+	612	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	21	-159	5	159	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	14	17	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGGCTGCATCTGACAGA	NA	False	NA	NA	False	NA	NA	NA	152410330	152417096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
95702	chr11	-	1264	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	6180.4734001531	7	15	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113072	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109989_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
95703	chr10	-	6486	7	NNC	ENSMUSG00000079685.11	novel	3815	6	NA	NA	-18779	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	24.0190896302642	108	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTGTTCTCTTACTT	NA	False	NA	NA	False	NA	NA	NA	7442417	7390361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_7395698_7396417_7396553_7397380_7397485_7406339_7406616_7406953_7407209_7423253_7423388_7442171
95704	chr7	-	1178	5	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTGCTGACGGGCCCCC	NA	False	NA	NA	False	NA	NA	NA	46505051	46499664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46499774_46500306_46500482_46501299_46501417_46503404_46503529_46504398
95705	chr17	-	3677	6	NNC	ENSMUSG00000024097.12	novel	1921	7	NA	NA	0	-110	intron_retention	FALSE	non_canonical	0	0	junction_3	863.250925281867	7	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGTTCTGTTTTTAGAAT	NA	False	NA	NA	False	NA	NA	NA	80514734	80507663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80509597_80509634_80510119_80511168_80511954_80512868_80513276_80513458_80514603
95706	chr4	+	4832	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-38	182482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	178.263400618299	1197	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146586445	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146797295_146797381_146800390_146800518_146802050
95707	chr13	+	16830	12	Antisense	novelGene_ENSMUSG00000113712.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	404	224	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGCGATCTTGTAGAAAG	NA	False	NA	NA	False	NA	NA	NA	65693391	65960858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_65694747_65695169_65695680_65696015_65696131_65762174_65762250_65825245_65832817_65883517_65883716_65904283_65907611_65907773_65910089_65910257_65911338_65912506_65912564_65912746_65912879_65960763
95708	chr5	-	4181	28	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	12	-39	combination_of_known_junctions	FALSE	canonical	2	51	junction_7	238.444243093583	2	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTCTCCACATCAATCAG	8120	False	NA	NA	False	NA	NA	NA	100564081	100509551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100523819_100523913_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
95709	chr15	+	2051	3	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98453	-144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATAGTGCTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	98829318	98935847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98830238_98848428_98848737_98935023
95710	chr7	+	1262	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-19	-11	-19	11	mono-exon	FALSE	NA	NA	NA	NA	NA	5	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396375	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
95711	chr1	-	10648	34	NIC	ENSMUSG00000040225.16	novel	11289	35	NA	NA	9	-11	intron_retention	FALSE	canonical	3	34	junction_25	41.491698750442	792	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTAAATAATGAGTCTTG	3454	False	NA	NA	False	NA	NA	NA	162568085	162499367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_162501721_162504259_162504387_162504923_162505028_162505578_162505798_162507068_162507177_162507394_162507627_162508328_162508466_162508789_162508903_162509886_162510091_162511623_162511826_162515684_162515787_162518709_162518803_162519941_162520194_162520304_162520494_162523846_162523933_162525001_162525843_162526447_162526603_162529750_162529960_162531937_162534191_162535334_162535543_162536421_162536681_162537097_162537256_162537851_162538399_162540872_162540927_162541811_162541957_162542960_162543049_162543154_162543289_162543847_162543931_162546258_162546480_162548049_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
95712	chr15	-	4329	19	FSM	ENSMUSG00000033075.18	ENSMUST00000180657.2	3806	19	-19	-504	-19	3	multi-exon	FALSE	canonical	3	73	junction_18	49.2407790452959	134	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGGGCCCTTTCACAGT	6442	False	NA	NA	False	NA	NA	NA	97991151	97939109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
95713	chr8	-	4374	42	NIC	ENSMUSG00000032815.17	novel	4485	43	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	2	15	junction_38	27.438124646495	6	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTGGCCTTATTGT	NA	False	NA	NA	False	NA	NA	NA	124045300	123995038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039978_124040113_124043101_124043196_124044800_124044911_124045213
95714	chr4	-	4764	21	NNC	ENSMUSG00000039158.12	novel	5387	22	NA	NA	7839	17672	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	12.25754869458	5	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTCTGTGTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	63313752	63267689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_63267730_63285404_63286524_63288708_63288890_63289128_63289249_63290033_63290130_63291559_63291707_63292233_63292350_63292593_63292768_63295067_63295231_63295888_63296098_63296806_63296914_63297391_63297612_63298124_63298326_63298435_63298600_63299964_63300167_63300579_63300708_63302123_63302184_63304466_63304622_63305233_63305391_63310368_63310444_63312822
95715	chr12	+	2121	2	ISM	ENSMUSG00000051721.7	ENSMUST00000085793.3	1992	3	468	856	468	-856	5prime_fragment	FALSE	canonical	3	17	junction_1	0	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATTAATTAATTAACTT	NA	False	NA	NA	False	NA	NA	NA	4900613	4906069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_4901943_4905277
95717	chr2	+	3399	2	Intergenic	novelGene_2834	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	67	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAGAGGGAGAAGGGGTAT	NA	False	NA	NA	False	NA	NA	NA	174807625	174817103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_174809798_174815876
95718	chr14	+	6896	45	FSM	ENSMUSG00000058997.9	ENSMUST00000040990.7	7054	45	134	24	-6	-24	multi-exon	FALSE	canonical	2	24	junction_28	13.7905487757808	101	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGTATGGTGTCACCAC	9340	False	NA	NA	False	NA	NA	NA	79086625	79439726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293_79302446_79318552_79318662_79320212_79320352_79324059_79324260_79329730_79329842_79331165_79331231_79331637_79331764_79333111_79333222_79333824_79333980_79335673_79335870_79339675_79339758_79340931_79341137_79394511_79394621_79397404_79397562_79401543_79401653_79418180_79418307_79420412_79420572_79434851_79434951_79435661_79435901_79438537
95719	chr6	+	3464	5	NNC	ENSMUSG00000030096.9	novel	6186	15	NA	NA	-425	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	164.314294874183	10	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACGTCTGGTGTGTTTCGG	521	False	NA	NA	False	NA	NA	NA	91726739	91736044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91726811_91727253_91727355_91729267_91729439_91731894_91733052_91734080
95720	chr17	+	5187	1	Intergenic	novelGene_240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	89	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTTTTCTCGTTGGTGAT	NA	False	NA	NA	False	NA	NA	NA	40489659	40494846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40489700_40494800
95721	chr2	+	2632	1	Intergenic	novelGene_2610	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGGATCTGCAGAGCTC	4041	False	NA	NA	False	NA	NA	NA	34569014	34571646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_34569000_34571600
95722	chr2	+	892	8	NNC	ENSMUSG00000027374.13	novel	3228	11	NA	NA	69	-79	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	520.04309083626	1	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTGGCAGGACGTGAAG	4036	False	NA	NA	False	NA	NA	NA	127429210	127445696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436430_127442748_127442807_127443297_127443361_127444304_127444442_127445548
95723	chr6	-	1989	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	11	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	900.061562520326	4066	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATGCGTTTCTGAAATG	NA	False	NA	NA	False	NA	NA	NA	83294577	83282690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287439_83288195_83288345_83288793_83288917_83290343_83290529_83294410
95724	chr19	+	890	1	Intergenic	novelGene_1199	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3080	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTTTAAAAAAATAATAATAA	NA	False	NA	NA	False	NA	NA	NA	5623469	5624359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_5623500_5624400
95725	chr4	+	4108	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-88	182214	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	164.939320939055	34	62	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGAACTATTTCTCATAA	NA	False	NA	NA	False	NA	NA	NA	146586395	146806066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146797295_146797381_146800390_146800518_146802050_146803278_146803445_146804210_146804547
95726	chr13	-	2362	4	NNC	ENSMUSG00000113559.2	novel	1005	4	NA	NA	-8265	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	70.5423434698779	1	19	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAACCTCATGAATGTTA	NA	False	NA	NA	False	NA	NA	NA	66138870	66124445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66126463_66126549_66126651_66126851_66126979_66138753
95727	chr9	+	634	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-10	-134	-10	134	mono-exon	FALSE	NA	NA	NA	NA	NA	16	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTCATTCCCCTTCAAGT	NA	False	NA	NA	False	NA	NA	NA	96777700	96778334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778300
95728	chr14	+	2053	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	66	1104	-14	-8	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	43	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAATCCTCAGACTCT	NA	False	NA	NA	False	NA	NA	NA	30271153	30295573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
95729	chr3	-	488	1	Intergenic	novelGene_3072	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTATGATTCTTAAACA	NA	False	NA	NA	False	NA	NA	NA	5925886	5925398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_5925400_5925900
95730	chr13	+	3648	5	NNC	ENSMUSG00000113350.3	novel	604	3	NA	NA	-9026	710	intron_retention	FALSE	canonical	0	0	junction_1	4.54835134966506	4	79	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTTTTTTCTTCCA	NA	False	NA	NA	False	NA	NA	NA	66331109	66345283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66332087_66334416_66334495_66340135_66340278_66341741_66343121_66344211
95731	chr4	-	2214	2	Antisense	novelGene_ENSMUSG00000067916.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATCACGAGGCAGCCGAGA	NA	False	NA	NA	False	NA	NA	NA	147246428	147216530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147216758_147244441
95732	chr12	+	6240	21	FSM	ENSMUSG00000020594.15	ENSMUST00000111122.9	6311	21	42	29	7	-25	multi-exon	TRUE	canonical	3	78	junction_1	34.6128227684481	377	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTCTTGTGTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	8724265	8802532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_8724481_8748090_8748160_8755932_8756042_8759321_8759510_8760158_8760326_8763359_8763631_8763843_8763938_8768987_8769114_8771664_8771808_8774046_8774180_8778633_8778778_8778855_8779150_8783272_8783510_8793760_8794029_8794336_8794467_8794614_8794744_8797156_8797295_8798110_8798237_8798397_8798520_8798760_8798954_8799588
95733	chrM	+	1027	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	14	-4	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTCTTGATAGTATAAA	12	False	NA	101	True	NA	NA	NA	14158	15284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14737_14835
95734	chr17	-	1684	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	78	887	-11	797	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	6	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTCTCCTTTCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	36149120	36145699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
95735	chr4	+	2365	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-12996	-11	multi-exon	FALSE	non_canonical	0	0	junction_1	0.372677996249965	1	36	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAACAAATTTGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	145160313	145265747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145160385_145162487_145162684_145173283_145173342_145174456_145174578_145176036_145176478_145264100_145264571_145264739
95736	chr10	-	3205	14	Antisense	novelGene_ENSMUSG00000037608.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	391	8	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGGCGTGGCCTTCCAGG	NA	False	NA	NA	False	NA	NA	NA	20216013	20188214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20188349_20193751_20193878_20197744_20197861_20198706_20199122_20199163_20199613_20200883_20201550_20201673_20201844_20203845_20203952_20205050_20205139_20207829_20208005_20209134_20209319_20210244_20210391_20215453_20215666_20215795
95737	chr4	-	665	7	Antisense	novelGene_ENSMUSG00002075360.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGACAGACACACATTTCT	NA	False	NA	NA	False	NA	NA	NA	117531085	117410162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_117410240_117439796_117439912_117446292_117446353_117450265_117450360_117472365_117472443_117506509_117506603_117530936
95738	chr11	+	3835	22	NNC	ENSMUSG00000011256.17	novel	6383	23	NA	NA	-26	1263	intron_retention	FALSE	non_canonical	0	0	junction_16	109.881589535376	3	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTCAACCAGAGTTTTATC	NA	False	NA	NA	False	NA	NA	NA	45946858	46035947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449_46004516_46009246_46009319_46012246_46012414_46013919_46014005_46015834_46015975_46018072_46018251_46019612_46019703_46022449_46022646_46025254_46025364_46027074_46027171_46028455_46028476_46029663_46029803_46030519_46030605_46030832_46031058_46033745_46033899_46034618
95739	chr13	-	2767	4	Fusion	ENSMUSG00000114434.2_ENSMUSG00000114839.2	novel	1153	3	NA	NA	-3565	-120	intron_retention	FALSE	canonical	0	0	junction_1	86.4458725960291	61	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTCACTGTACTCACC	NA	False	NA	NA	False	NA	NA	NA	66892942	66697896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66698076_66886668_66889043_66889243_66889330_66892814
95740	chr5	+	5338	24	FSM	ENSMUSG00000029502.15	ENSMUST00000112512.8	8132	24	156	2638	0	631	multi-exon	FALSE	canonical	3	40	junction_3	20.4320997313759	66	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGCATCCTAAAACCAAATA	NA	False	NA	NA	False	NA	NA	NA	110324722	110371698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110324789_110329468_110329780_110332203_110332354_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
95741	chr4	+	2274	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-50	-5	multi-exon	FALSE	non_canonical	0	0	junction_2	37.0390184655167	1	39	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209662	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147316807_147316901_147447267_147447311_147665698_147665826_147667290_147667401_147667787_147668493_147668576
95742	chr9	-	830	4	Fusion	ENSMUSG00000076138.3_ENSMUSG00000037742.15	novel	745	3	NA	NA	-2	-4	multi-exon	FALSE	non_canonical	0	0	junction_1	5817.67811645391	747	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8134	False	NA	-46	True	NA	NA	NA	78387972	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_78386153_78387378_78387431_78387522_78387703_78387792
95743	chrX	+	7106	31	NNC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	-5411	-6615	intron_retention	FALSE	non_canonical	0	0	junction_1	102.712024612506	10	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAATGTTCAGACCTGAG	NA	False	NA	NA	False	NA	NA	NA	99663931	99761641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99667034_99667188_99667249_99667466_99667565_99668136_99668196_99668400_99668485_99668893_99668993_99669490_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759995_99761532
95744	chr15	-	4577	1	Intergenic	novelGene_3289	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTCAGGCCCGGGTAGTC	NA	False	NA	NA	False	NA	NA	NA	50440711	50436134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_50436100_50440700
95745	chrM	-	571	1	Antisense	novelGene_ENSMUSG00000064371.1_AS_novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCCGCGATAATAAATGGT	899	False	NA	59	True	NA	NA	NA	15289	14718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14700_15300
95746	chr11	-	2557	16	NIC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	-5	0	intron_retention	FALSE	canonical	3	352	junction_5	137.017500909758	16	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	NA	False	NA	NA	NA	70860793	70833897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
95747	chr4	+	2464	18	NNC	ENSMUSG00000066036.15	novel	15798	106	NA	NA	4804	-259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	93.4281731032549	2	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTCATTCATCTCTCCGT	1264	False	NA	NA	False	NA	NA	NA	139195373	139216582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208152_139209820_139209994_139212595_139212687_139213295_139213459_139216477
95748	chr13	-	5300	4	FSM	ENSMUSG00000112964.2	ENSMUST00000222455.2	1614	4	30	-3716	0	3716	multi-exon	FALSE	canonical	3	37	junction_3	3.29983164553722	106	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCTCCTCACACTTCTCT	6499	False	NA	NA	False	NA	NA	NA	74610808	74591674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74596679_74598074_74598136_74598354_74598482_74610700
95749	chr18	-	2907	9	NIC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	-3686	-526	intron_retention	FALSE	canonical	3	906	junction_8	66.4519328161341	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGCAATGAGAAATGCCAT	NA	False	NA	NA	False	NA	NA	NA	34774610	34765261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34767218_34767445_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525
95750	chr11	-	1211	3	FSM	ENSMUSG00000025155.16	ENSMUST00000142418.8	1039	3	-171	-1	-171	0	multi-exon	FALSE	canonical	3	888	junction_2	72	12	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	NA	False	NA	NA	NA	120681444	120680026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120680386_120680482_120680559_120680668
95751	chr16	-	4335	5	Antisense	novelGene_ENSMUSG00000022686.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTGTAAGCGAGGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	19591235	19579131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_19579224_19579386_19579576_19582898_19583102_19583855_19583963_19587491
95752	chr11	-	4345	3	Antisense	novelGene_ENSMUSG00000017548.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAGGTTGGCGATGTATA	NA	False	NA	NA	False	NA	NA	NA	79924917	79916719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_79916793_79919985_79920173_79920832
95753	chr1	-	938	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	-21	-26	-21	26	mono-exon	FALSE	NA	NA	NA	NA	NA	38	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGGTAACAACAACAACAAA	NA	False	NA	NA	False	NA	NA	NA	86837426	86836488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837400
95754	chr12	-	566	6	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5398.53196341376	7	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685880	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28681193_28681622_28681781_28684236_28684352_28685414_28685487_28685578_28685663_28685854
95755	chr9	+	1836	8	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	191651	7	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGACAACTAAGGTGAGG	NA	False	NA	NA	False	NA	NA	NA	78385734	78395402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386816_78386904_78387057_78387133_78387433_78387524_78387710_78387797_78387969_78395273
95756	chr4	+	3025	9	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078497.10	novel	1488	4	NA	NA	16	2335	multi-exon	TRUE	non_canonical	0	0	junction_1	122.611110324473	3	93	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAGATAAAAATATACT	2393	False	NA	NA	False	NA	NA	NA	147445783	147600278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147445958_147576893_147576962_147577686_147577748_147591992_147592098_147595209_147595337_147596801_147598049_147598633_147598769_147599020_147599868_147600017
95757	chr15	-	3121	2	Antisense	novelGene_ENSMUSG00000037386.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	75	junction_1	0	5	60	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	2125	False	NA	NA	False	NA	NA	NA	39110545	39105325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_39106160_39108258
95758	chr1	-	1514	2	Genic_Genomic	ENSMUSG00000100862.2_ENSMUSG00000101111.2	novel	783	1	NA	NA	-126	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	False	NA	NA	False	NA	NA	NA	24653858	24652269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_24652894_24652968
95759	chr2	+	4135	30	NNC	ENSMUSG00000036202.17	novel	2789	14	NA	NA	-1302	2859	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	122.11319089763	5	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACCAGCAGTAGAAAATG	NA	False	NA	NA	False	NA	NA	NA	51961541	52000596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51961660_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983578_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922
95760	chr9	-	2529	3	Antisense	novelGene_ENSMUSG00000111424.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTTCTAAATCCACCCC	NA	False	NA	NA	False	NA	NA	NA	22152146	22137018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_22137128_22148969_22149081_22149837
95761	chrX	+	5085	2	Intergenic	novelGene_4019	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	77	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAGGACCGTGGCGCCCA	NA	False	NA	NA	False	NA	NA	NA	116226563	116231708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_116229320_116229379
95762	chr11	+	2411	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	-95	-216	-95	216	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	13	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAGTGTGAGTGGGTACT	2896	False	NA	NA	False	NA	NA	NA	75623599	75656887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
95763	chr15	+	3918	27	NNC	ENSMUSG00000022369.14	novel	3144	22	NA	NA	-23314	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	79.2672899400369	3552	80	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	NA	NA	NA	55397489	55489819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55397734_55402425_55402547_55403517_55403606_55406719_55406781_55411537_55411636_55418719_55418840_55420653_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
95764	chr13	-	5637	9	Intergenic	novelGene_1442	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	166	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATGAATCAGTTTAAACC	6343	False	NA	NA	False	NA	NA	NA	66746547	66672593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66674178_66674375_66674434_66676025_66676628_66676963_66678247_66722518_66722995_66723252_66723803_66724137_66724389_66724802_66724971_66745882
95765	chr4	-	4067	6	Antisense	novelGene_ENSMUSG00000085525.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	125	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCAGCCGAGATGCAAGA	NA	False	NA	NA	False	NA	NA	NA	146256585	146206928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146207219_146209449_146209543_146240243_146240314_146250676_146250735_146251577_146251706_146253157
95766	chr8	+	5593	6	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	0	1418	intron_retention	FALSE	non_canonical	0	0	junction_2	44.5986546882302	38	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAATCTCACCCAAACT	NA	False	NA	NA	False	NA	NA	NA	85635318	85642568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85636400_85636599_85637314_85637821_85637964_85640490_85640563
95767	chr8	+	2899	5	ISM	ENSMUSG00000031982.6	ENSMUST00000212036.2	891	6	5	-148	5	-19	intron_retention	FALSE	canonical	3	24	junction_2	38.9767558937375	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATTTCCAGTTCAGTA	NA	False	NA	NA	False	NA	NA	NA	125448902	125460843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_125449082_125451994_125452115_125455107_125455222_125457577_125457756_125458535
95768	chr9	+	4759	22	NNC	ENSMUSG00000042496.19	novel	6772	22	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_21	8.75776299624583	115	9	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGCATGTTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	31191826	31293019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957_31241162_31246612_31246686_31248600_31248719_31251625_31251756_31252537_31252781_31258088_31258437_31260407_31260564_31264582_31264763_31265770_31265882_31268437_31268639_31270303_31270448_31271044_31271216_31272116_31272258_31273626_31273796_31282119_31282224_31291755
95769	chr13	-	2389	6	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7225	-765	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	46.3827554162105	2	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAACCTCATGAACATAAT	1369	False	NA	NA	False	NA	NA	NA	67010160	66998479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66999469_66999636_66999887_67000053_67000944_67002549_67002611_67002809_67002937_67010088
95770	chr11	-	3453	6	Antisense	novelGene_ENSMUSG00000036819.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	60	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCGCGTGCGCGCCTACGC	NA	False	NA	NA	False	NA	NA	NA	59348507	59340890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_59341338_59341499_59341665_59344334_59344469_59344700_59344883_59345755_59345902_59346128
95771	chr2	-	2446	14	ISM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	66	6048	-10	2249	5prime_fragment	FALSE	canonical	3	560	junction_13	61.9429017476827	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAGGAAGGTATTGTT	NA	False	NA	NA	False	NA	NA	NA	5017536	5001582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
95772	chr13	-	4176	12	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	6	-1	intron_retention	FALSE	non_canonical	0	0	junction_4	2769.63069412118	6	30	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGGGTTTTGTGTGTGTGT	4771	False	NA	NA	False	NA	NA	NA	58550310	58538956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541954_58542567_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58547027_58547706_58548232_58550206
95773	chr15	+	4162	29	NNC	ENSMUSG00000022369.14	novel	3144	22	NA	NA	-23314	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.0287257100568	3609	59	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	NA	NA	NA	55397489	55489819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_55397734_55402425_55402547_55403517_55403606_55406719_55406781_55411537_55411636_55418719_55418840_55420653_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440959_55447273_55447413_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
95774	chr11	-	1738	5	FSM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	84	5	84	-5	multi-exon	FALSE	canonical	3	5636	junction_4	437.152933765747	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACCATTGTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	120238833	120236521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794
95775	chr19	+	1943	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-1	-6	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	164.070938094693	24	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTGTAAAAAGATATGTAG	4138	False	NA	NA	False	NA	NA	NA	41921927	41932528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
95776	chrM	+	1607	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-655	5	-655	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	23	False	NA	-39	True	NA	NA	NA	2095	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2100_3700
95777	chr4	-	1230	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-156	-72	156	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCAATAAAGTTCGCTGC	NA	False	NA	NA	False	NA	NA	NA	91740978	91739748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
95779	chr2	-	4561	6	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5575	2867	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.2320512433443	18	23	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177021675	177003445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177005497_177005644_177007703_177008856_177008918_177009124_177009252_177017944_177018063_177021529
95780	chr17	+	2529	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	106.167320772449	3	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCACCTTCTAAGGGATGCA	NA	False	NA	NA	False	NA	NA	NA	17341676	17367096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366006_17366163
95781	chr5	-	4803	32	NNC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	0	1367	at_least_one_novel_splicesite	FALSE	non_canonical	3	12	junction_1	107.922477669225	15	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGAAGTGGACTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	124563655	124511227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_124511736_124512513_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
95782	chr11	-	3371	2	Intergenic	novelGene_2313	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	128	junction_1	0	17	36	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57448776_57450695
95783	chr16	+	1754	10	FSM	ENSMUSG00000022884.17	ENSMUST00000147117.8	1947	10	4	189	0	0	multi-exon	FALSE	canonical	3	563	junction_3	486.088189935799	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
95784	chr14	+	5140	9	NNC	ENSMUSG00000075592.11	novel	7511	8	NA	NA	9123	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	40.3250464971834	10	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGTTTAATTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	56100615	56112193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_56101069_56101189_56102591_56103415_56103547_56103667_56103765_56105477_56105580_56105870_56105973_56107584_56108915_56109664_56111062_56112066
95785	chr13	+	775	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-13	-31	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCAAAAAAAACAAAAAAACA	7949	False	NA	NA	False	NA	NA	NA	74554514	74555434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554794_74554938
95786	chr6	-	1664	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	0	-3	0	3	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	779	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828062	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
95787	chr4	+	1993	1	NIC	ENSMUSG00000028691.13	novel	2294	6	NA	NA	11518	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGTTCATTGGGTATC	NA	False	NA	NA	False	NA	NA	NA	116556026	116558019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116556000_116558000
95788	chr5	+	381	1	Intergenic	novelGene_921	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2181	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTTCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
95789	chr9	-	3409	9	Antisense	novelGene_ENSMUSG00000039285.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	149	4	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCGGAAGCCGGACCTG	NA	False	NA	NA	False	NA	NA	NA	117892907	117869601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_117870025_117876478_117876701_117878376_117878502_117878961_117879064_117880420_117880569_117884881_117884976_117888121_117888242_117888685_117888734_117890780
95790	chr15	-	3527	4	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	14.6590889515307	52	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACAAGACCGTTTTCTCG	9795	False	NA	NA	False	NA	NA	NA	22705095	22699825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700670_22701521_22701920_22702717_22704588_22704680
95791	chr15	-	2185	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-55	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1884.08672983904	1	67	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCATGAGTCTCAGTGGTG	703	False	NA	NA	False	NA	NA	NA	36793818	36771014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772111_36772713_36773018_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
95792	chr5	+	4119	15	NIC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	0	2	intron_retention	FALSE	canonical	0	0	junction_3	698.876507295087	72	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108213581	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
95793	chr11	+	3017	14	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	5	164	intron_retention	FALSE	canonical	3	13	junction_3	62.9666014598873	35	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAATGGTAAATATT	NA	False	NA	NA	False	NA	NA	NA	29476461	29495443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476844_29479928_29480155_29480580_29480779_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
95794	chr4	+	2072	6	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-88	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	71.6703564941601	39	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390042	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724_147416345_147416596_147417219_147417782
95795	chr14	+	5164	1	Intergenic	novelGene_554	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	79	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCACAGCCTCCGCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	43901390	43906554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_43901400_43906600
95796	chr2	-	2918	20	NNC	ENSMUSG00000033808.17	novel	2897	20	NA	NA	7	0	intron_retention	FALSE	non_canonical	0	0	junction_8	134.797827481116	2	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	120234587	120185792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204964_120205041_120205895_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
95797	chr4	-	5486	25	NNC	ENSMUSG00000003810.14	novel	5445	29	NA	NA	18694	575	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	63.5025699392465	135	37	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGAGGGCTACATTTTAT	NA	False	NA	NA	False	NA	NA	NA	116210235	116163383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116165535_116165843_116166038_116166121_116166259_116166700_116166824_116167012_116167240_116167653_116167849_116167944_116168220_116168410_116168566_116168875_116168986_116169124_116169248_116169487_116169590_116170049_116170216_116170889_116171023_116172003_116172143_116173019_116173229_116173659_116173748_116174173_116174236_116174905_116175039_116176955_116177058_116179460_116179671_116183269_116183346_116184805_116184961_116187587_116187667_116194618_116194695_116210169
95798	chr15	-	3951	1	FSM	ENSMUSG00000105167.4	ENSMUST00000199549.4	108	1	-398	-3445	-398	3445	mono-exon	FALSE	NA	NA	NA	NA	NA	164	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAGCAGTTAGTGCTCT	3572	False	NA	NA	False	NA	NA	NA	79967553	79963602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79963600_79967600
95799	chr1	-	3047	8	NNC	ENSMUSG00000022995.17	novel	1971	13	NA	NA	-1174	1434	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	139.234642651481	1	74	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGCATGTTTCTTGTTT	NA	False	NA	NA	False	NA	NA	NA	181746099	181730530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181731959_181732251_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002
95801	chr15	+	3378	18	NNC	ENSMUSG00000022394.15	novel	2578	18	NA	NA	4	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	164.132130923181	106	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGATGATATCAGATG	NA	False	NA	NA	False	NA	NA	NA	81548138	81572513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140_81571502_81571558
95802	chr8	+	4218	7	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-24	-760	multi-exon	FALSE	non_canonical	0	0	junction_1	665.729341065538	295	33	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGGCACCATTCTTT	NA	False	NA	NA	False	NA	NA	NA	19834737	20045128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834913_19843072_19843133_20030550_20030856_20035860_20036160_20039783_20039904_20041811_20044228_20044285
95803	chr4	-	3291	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	102.070917612326	13	29	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9495	False	NA	NA	False	NA	NA	NA	147894273	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147868857_147868955_147889671_147889780_147891546_147891641_147893775
95804	chr11	+	2579	9	NIC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	25	792	combination_of_known_splicesites	FALSE	canonical	2	6	junction_3	131.28880378768	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTATTGATCCTGTTT	8519	False	NA	NA	False	NA	NA	NA	74661680	74709512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_74661811_74664347_74664476_74674883_74675084_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
95805	chr15	-	4633	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	65	79	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCGAGAGCGCTCTTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700082_22700580_22704553_22704649
95806	chr4	+	3643	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43236	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	132.859324098838	28	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533637	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533956_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597042_147597711
95807	chr16	-	8539	27	NNC	ENSMUSG00000022521.11	novel	7749	30	NA	NA	-65	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	14.763069628369	16	81	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTAAAACTGCTTGGATT	NA	False	NA	NA	False	NA	NA	NA	3946550	3899215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3903395_3903524_3904063_3905544_3905827_3906107_3906270_3909655_3909824_3910053_3910220_3911335_3911450_3912037_3912185_3912499_3912651_3913926_3913995_3914304_3914383_3917538_3917596_3919421_3919503_3925291_3925381_3925899_3926140_3926963_3927083_3932637_3932828_3933641_3933822_3935118_3935533_3936896_3937086_3937595_3937721_3942033_3942079_3942499_3942672_3943508_3943627_3944330_3944478_3944733_3944807_3946303
95808	chr8	-	382	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	75	-8	60	8	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTATCGCTTCTATGAA	NA	False	NA	NA	False	NA	NA	NA	108166136	108165754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166100
95809	chr7	-	672	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5582.89117652215	4	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCTGACTGGATTGTGT	8453	False	NA	NA	False	NA	NA	NA	99132827	99128090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129212_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
95810	chr19	+	5041	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	414	0	12	0	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	1	252	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1481	False	NA	NA	False	NA	NA	NA	44282526	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
95811	chr4	+	4380	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	13	1455	multi-exon	FALSE	non_canonical	0	0	junction_8	49.4884771941914	1	98	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTTCCAGGTTCATGGA	NA	False	NA	NA	False	NA	NA	NA	147216507	147671110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216568_147216646_147216818_147219028_147219122_147224494_147224577_147249797_147249867_147661528_147661587_147665698_147665826_147667290_147670022_147670121
95812	chrM	+	1594	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-290	74	-290	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	363	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAATAGCCCTTCACATAA	-1	True	NA	NA	False	NA	NA	NA	9876	11470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
95813	chr11	+	1068	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	33	346	19	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	649	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691219	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
95814	chr4	+	3791	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-49	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	187.01080182706	22	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTAACAAGGTTGACT	NA	False	NA	NA	False	NA	NA	NA	145397205	145430998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474_145427955_145428205
95815	chrM	+	1040	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	104	0	-104	mono-exon	FALSE	NA	NA	NA	NA	NA	67	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATCATTGGCCAACTAG	-2	True	NA	87	True	NA	NA	NA	14144	15184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15200
95816	chr2	+	3543	12	NIC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	-20	intron_retention	FALSE	canonical	3	1351	junction_7	108.388496233237	41	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATGATTTAGAAGACTA	661	False	NA	NA	False	NA	NA	NA	26279367	26287114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
95817	chr18	+	3644	13	Antisense	novelGene_ENSMUSG00000024587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.38192699598142	14	30	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCACCTAGAGCAGCGGT	NA	False	NA	NA	False	NA	NA	NA	64632725	64649599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_64633723_64634375_64634946_64636577_64637543_64637916_64638114_64638219_64638449_64640841_64640932_64642316_64642386_64643522_64643601_64644679_64644771_64644851_64644949_64645054_64645120_64648395_64648483_64649490
95818	chr5	+	4847	15	Antisense	novelGene_ENSMUSG00000106706.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCCGGGGGCGGAGGCCG	NA	False	NA	NA	False	NA	NA	NA	66457722	66776174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_66460053_66464877_66465060_66466422_66466543_66468348_66468427_66469501_66469590_66470657_66470772_66520059_66520188_66522315_66522464_66548969_66549031_66549114_66549200_66557417_66557625_66608810_66609627_66619440_66619510_66700804_66700965_66775913
95819	chr15	+	2031	1	Intergenic	novelGene_3232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTTTACATAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	22699885	22701916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22699900_22701900
95820	chr1	-	6542	23	NIC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	-8	-10	intron_retention	FALSE	canonical	3	518	junction_14	36.4385875296646	456	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTCTTCTGTCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	135358179	135310059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_135313216_135313664_135313742_135313956_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
95821	chr16	-	564	1	Intergenic	novelGene_3770	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	114	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95822	chrM	-	446	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGATATCTTTGATTGTAT	908	False	NA	68	True	NA	NA	NA	15280	14834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14800_15300
95823	chr7	-	6527	6	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-35	334	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	28.6454184818445	209	70	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATATATTGAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	27713575	27683944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713445
95824	chr11	-	1620	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-263	111	at_least_one_novel_splicesite	FALSE	canonical	3	238	junction_6	7811.11681622204	12	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGCATGATGGTGGGTA	9678	False	NA	NA	False	NA	NA	NA	69812475	69807428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988_69812161_69812263
95825	chr13	+	9238	25	NNC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	0	-296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	71.9305099654444	842	117	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTGGAATTGAGACCC	NA	False	NA	NA	False	NA	NA	NA	55357594	55463272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381682_55381844_55386502_55386676_55393330_55395891_55408156_55408282_55409356_55409628_55411145_55411256_55416260_55416337_55424335_55424455_55425344_55425489_55430471_55430596_55437867_55438069_55438943_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149_55458355_55459758_55459797_55459931
95826	chr1	+	496	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	62	0	-62	multi-exon	FALSE	canonical	2	9164	junction_1	3956.18005993998	2770	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTAGATACATCTGGCT	NA	False	NA	NA	False	NA	NA	NA	72750448	72752910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
95827	chr3	-	3887	9	FSM	ENSMUSG00000028106.14	ENSMUST00000197449.2	3298	9	-591	2	-506	-2	multi-exon	FALSE	canonical	3	54	junction_5	23.6851087183488	52	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGGAAAGTGTCATGAAT	9942	False	NA	NA	False	NA	NA	NA	95726681	95679568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95693631_95693710_95694595_95694697_95697411_95697542_95725858
95828	chr5	-	4715	25	NIC	ENSMUSG00000055204.16	novel	4938	27	NA	NA	379	-83	intron_retention	TRUE	canonical	1	45	junction_24	31.0563723555873	47	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTCGATCTGGTCAATGGA	NA	False	NA	NA	False	NA	NA	NA	90513665	90400653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
95829	chr17	-	2778	20	Fusion	ENSMUSG00000052752.16_ENSMUSG00000079657.11	novel	2504	20	NA	NA	-5	0	intron_retention	FALSE	canonical	0	0	junction_19	141.774117091267	1	59	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTGTGGAGACAGCTT	NA	False	NA	NA	False	NA	NA	NA	24746830	24727827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24733189_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738173_24746731
95830	chrM	-	2176	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATAATCTAAACTTACTTT	1	True	NA	7	True	NA	NA	NA	3702	1526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3700
95831	chr5	-	3634	13	NIC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	-37	-5	intron_retention	FALSE	canonical	3	58	junction_12	99.7441170640599	1	105	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTGTACAAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	123060207	123008748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
95832	chr11	-	4769	29	NNC	ENSMUSG00000037275.15	novel	4922	28	NA	NA	13	-104	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	60.5771876473752	3	112	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGACTGTCTCAAGCCTTA	NA	False	NA	NA	False	NA	NA	NA	58059352	58012219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_58012611_58013107_58013202_58015757_58016245_58017257_58017421_58019470_58019726_58020843_58021055_58021468_58021589_58025589_58025738_58027683_58027822_58028493_58028593_58029844_58029968_58030320_58030435_58032413_58032538_58032573_58032636_58036174_58036347_58037218_58037359_58038652_58038835_58039240_58039315_58041371_58041509_58042357_58042441_58045927_58046014_58046457_58046671_58047492_58047659_58051531_58051665_58054619_58054740_58055082_58055235_58056718_58056901_58058534_58058696_58059113
95833	chr19	-	5125	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	96	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22705563	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22705124_22705512
95834	chr4	+	3508	8	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43162	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	124.048048623696	4	96	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533711	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147578832_147579065_147591995_147592098_147595209_147595337_147596801_147597165_147597836_147598853_147599020
95835	chr15	-	1774	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	117	1023	-20	-846	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	1	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAACTTTACAGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	35155835	34876664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
95836	chr5	-	3418	19	NIC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	0	233	intron_retention	FALSE	canonical	3	165	junction_16	148.883426516715	251	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGTGAGTGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	31337253	31314554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575_31331840_31337227
95837	SIRV3	+	807	6	NNC	SIRV3A	novel	1083	8	NA	NA	727	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	706.250663716502	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTAAGACGGTGAAGCTGC	NA	False	NA	NA	False	NA	NA	NA	4730	8950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_4772_6057_6334_7270_7367_7872_7989_8124_8208_8755
95838	chr7	-	347	2	NNC	ENSMUSG00000050708.17	novel	825	3	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1465	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCTGGTGTTTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	45109262	45107371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107555_45109098
95839	chr4	-	1450	8	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	45	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	540.414051389095	3	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGAGCTGAGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	137523650	137469047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469513_137476864_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
95840	chr2	+	3836	5	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	-1	2530	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	76.2102355330306	4	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTTTCCTCCCCAACT	NA	False	NA	NA	False	NA	NA	NA	177190006	177204086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177199035_177199097_177200246_177200570_177200654_177201191_177201274
95841	chr16	+	3288	6	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1278	junction_5	312.314328841954	5	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
95842	chr6	-	2121	9	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	167	5	combination_of_known_splicesites	FALSE	canonical	2	5	junction_8	1330.77702865657	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8652	False	NA	NA	False	NA	NA	NA	145021743	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_145021614
95843	chr13	+	8309	12	NNC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	10268	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.6333181680284	3	216	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATTTAAAAAACGGCACA	NA	False	NA	NA	False	NA	NA	NA	38021636	38135963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_38021720_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38130832_38131640_38132618
95844	chr18	+	5897	3	ISM	ENSMUSG00000042439.14	ENSMUST00000169679.8	5003	6	40454	-13	-2158	12	intron_retention	FALSE	canonical	3	18	junction_1	42	13	121	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTATTGGTGGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	65756050	65822024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_65758406_65815965_65816079_65818595
95846	chr5	+	8055	52	NNC	ENSMUSG00000042010.17	novel	506	2	NA	NA	7596	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.5844397339405	195	48	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCCTTGATTTATT	NA	False	NA	NA	False	NA	NA	NA	114321562	114388822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_114321755_114322110_114322244_114326391_114326531_114328136_114328247_114328390_114328473_114329215_114329315_114329912_114330023_114330134_114330246_114333284_114333495_114333695_114333867_114334720_114334883_114336237_114336402_114338300_114338452_114338556_114338661_114339959_114340042_114341450_114341597_114342732_114342884_114345296_114345432_114347813_114347961_114348965_114349155_114350711_114350813_114351372_114351462_114351673_114351799_114354661_114354776_114354871_114354986_114355709_114355800_114356922_114357042_114361292_114361431_114361868_114361969_114362049_114362158_114363634_114363692_114363916_114363957_114364737_114364954_114366591_114366748_114367791_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
95847	chr3	+	7767	46	NNC	ENSMUSG00000045328.12	novel	7910	46	NA	NA	72	-81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_28	46.2867818371455	192	73	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTCCAGATGGGTATAAC	NA	False	NA	NA	False	NA	NA	NA	134918369	134979291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930_134929061_134930717_134930838_134934517_134934677_134935808_134935966_134937125_134937215_134938657_134938826_134939488_134939564_134939731_134939852_134940593_134940717_134940826_134940984_134941217_134941373_134943263_134943579_134943687_134943961_134944075_134944232_134945517_134945710_134946708_134946868_134947823_134948115_134948237_134948402_134949358_134949640_134952247_134952407_134952577_134952863_134953098_134953387_134953830_134953990_134954142_134954425_134955416_134955576_134957182_134957444_134961207_134961310_134962237_134962457_134964952_134965148_134965739_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
95848	chr14	+	3996	18	FSM	ENSMUSG00000021911.17	ENSMUST00000022470.15	4413	18	83	334	0	-4	multi-exon	FALSE	canonical	1	134	junction_15	83.8243756407233	130	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTCCCATGCCACTTAT	NA	False	NA	NA	False	NA	NA	NA	31923988	32019173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_31924423_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
95849	chr1	-	4325	29	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-5	1576	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_23	241.792611739558	2	42	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCTCCAACAAAAACTTC	7882	False	NA	NA	False	NA	NA	NA	84817037	84720872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84792543_84792691_84816949
95850	chr16	-	551	1	Intergenic	novelGene_3684	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212026	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95851	chr3	+	2935	24	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	29	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	164.503790729762	1	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGTGTCTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	54600562	54636182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600630_54602543_54602629_54603904_54603941_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
95852	chr12	+	2131	7	Antisense	novelGene_ENSMUSG00000061477.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGGCTCTCGCGAGAACG	4354	False	NA	NA	False	NA	NA	NA	28679603	28685880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_28681191_28681620_28681774_28683766_28683832_28684207_28684351_28685413_28685486_28685577_28685662_28685853
95853	chr12	+	3895	7	NNC	ENSMUSG00000037466.14	novel	4000	9	NA	NA	5	-605	intron_retention	TRUE	non_canonical	0	0	junction_6	83.1352646126914	2	106	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCAATGGCGGAACGCTT	NA	False	NA	NA	False	NA	NA	NA	113120054	113129063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_113120192_113120294_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672_113128321_113128372
95854	chr1	-	2308	4	NNC	ENSMUSG00000026484.14	novel	570	4	NA	NA	832	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	245.259046724071	3	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTAGATGTGTACTCCT	NA	False	NA	NA	False	NA	NA	NA	151349038	151345153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_151346035_151346129_151347169_151347388_151347561_151348822
95855	chrM	-	2428	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	67	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTACAAGGTTTAATCTTTG	1	True	NA	7	True	NA	NA	NA	3702	1274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1300_3700
95856	chr1	-	6014	13	ISM	ENSMUSG00000038733.15	ENSMUST00000162963.8	6452	14	2176	25	2165	-25	3prime_fragment	FALSE	canonical	3	114	junction_11	17.2232078571005	185	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATTCAATAAACAGAATGAG	NA	False	NA	NA	False	NA	NA	NA	181036826	181000821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_181005397_181008868_181009055_181010333_181010464_181011291_181011371_181011815_181011962_181013512_181013633_181015170_181015312_181019325_181019465_181025139_181025297_181026411_181026510_181030588_181030726_181036615_181036673_181036777
95857	chr4	-	7696	7	Intergenic	novelGene_2142	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	95	96	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAATGATGGGATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	147671110	147445767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147445903_147447264_147447360_147469674_147472905_147474655_147475546_147599197_147599365_147667831_147670022_147670121
95858	chr11	+	2191	7	NIC	ENSMUSG00000020372.16	novel	1447	8	NA	NA	0	0	intron_retention	FALSE	canonical	1	1907	junction_1	1751.95706441555	43	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691186	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
95859	chr14	+	4316	5	ISM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	77	-295	-75	295	intron_retention	FALSE	canonical	3	1593	junction_4	103.185512549001	20	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACCCCACAATCAGCCAT	1763	False	NA	NA	False	NA	NA	NA	26359305	26378708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991
95860	chr16	+	3190	1	Antisense	novelGene_ENSMUSG00000025613.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	49	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAAGCGTTTTCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	87280922	87284112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_87280900_87284100
95861	chr11	+	3835	10	ISM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	54	25	54	-25	intron_retention	FALSE	canonical	3	527	junction_7	30.7394466483526	43	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTGAATATGAGTTGAT	NA	False	NA	NA	False	NA	NA	NA	78219294	78233583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834
95863	chr2	-	3028	13	Fusion	ENSMUSG00000086328.2_ENSMUSG00000027210.21	novel	3697	13	NA	NA	314	-6	multi-exon	FALSE	canonical	0	0	junction_2	21.6273682068706	45	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTAGGCTTTGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	115897611	115693550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_115694995_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115896711_115897100_115897529
95864	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	20	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
95865	chr6	+	2621	5	ISM	ENSMUSG00000029993.17	ENSMUST00000032060.15	948	8	48	5495	4	-227	5prime_fragment	FALSE	canonical	3	2612	junction_3	222.836683470204	44	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCTGGAACTTCCTATGT	NA	False	NA	NA	False	NA	NA	NA	86986865	86999941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700
95866	chr11	+	3981	6	Antisense	novelGene_ENSMUSG00000016984.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	113	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCATCTTTGCAAGTCGGG	NA	False	NA	NA	False	NA	NA	NA	17888770	17903857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_17890351_17895606_17897568_17897774_17897887_17902250_17902324_17902572_17902707_17903736
95867	chr11	-	1182	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-107	-73	107	mono-exon	FALSE	NA	NA	NA	NA	NA	11	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	4388	False	NA	NA	False	NA	NA	NA	20286086	20284904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284900_20286100
95868	chr9	-	1188	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4971.86158294858	528	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATGAGAAATCTGTGTT	7153	False	NA	NA	False	NA	NA	NA	78388953	78385746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386950_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
95869	chr4	+	3370	6	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1817	1166	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	32.8597017637105	11	34	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTAGGCCTATGCAATTA	2765	False	NA	NA	False	NA	NA	NA	147233133	147266202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147233279_147249797_147249844_147260303_147260362_147261203_147261331_147262781_147264366_147264792
95870	chr10	-	6069	28	FSM	ENSMUSG00000018166.9	ENSMUST00000082059.7	6016	28	-67	14	-67	-14	multi-exon	FALSE	canonical	0	0	junction_1	16.414470513838	100	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGTTTTTTTGTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	128425588	128403405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_128405764_128405922_128406224_128406804_128406877_128407038_128407228_128407314_128407413_128407513_128407661_128407997_128408074_128408302_128408459_128408627_128408814_128409043_128409143_128409280_128409401_128410207_128410344_128411850_128411905_128412729_128412885_128413072_128413164_128413968_128414102_128414262_128414469_128414870_128414962_128415364_128415439_128417632_128417754_128417858_128417973_128418985_128419128_128419234_128419354_128419505_128419572_128420179_128420306_128420880_128421068_128422008_128422161_128425288
95871	chr17	+	1084	2	Intergenic	novelGene_85	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	35	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095194	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
95872	chr5	+	3091	18	ISM	ENSMUSG00000042605.17	ENSMUST00000051950.14	4472	25	66478	0	158	0	3prime_fragment	FALSE	canonical	0	0	junction_2	76.4122854666854	185	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	121916149	121953013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121951447_121951617_121952400
95873	chr6	-	3163	18	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	42	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGACAAAATGAATTTGAA	NA	False	NA	NA	False	NA	NA	NA	37943110	37880462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37880585_37885149_37885298_37892097_37892230_37896305_37896424_37904458_37904574_37908286_37908433_37920343_37920465_37922454_37922621_37926154_37926331_37928381_37928561_37930428_37930562_37933334_37933409_37933936_37934108_37934443_37934771_37935494_37935629_37937714_37937791_37941637_37941786_37942433
95874	chr1	+	5423	8	NNC	ENSMUSG00000037216.6	novel	1485	2	NA	NA	2263	14217	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1076	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACCTTTCCCGGAAC	NA	False	NA	NA	False	NA	NA	NA	37913905	37929526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_37918443_37918635_37918704_37919079_37919170_37920013_37920129_37920778_37920867_37921642_37921780_37924295_37924397_37929239
95875	chr8	-	5788	1	Antisense	novelGene_ENSMUSG00000096401.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAACTTATATTCAAG	NA	False	NA	NA	False	NA	NA	NA	20721662	20715874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20715900_20721700
95876	chr1	+	7158	4	NIC	ENSMUSG00000026096.15	novel	1723	9	NA	NA	0	-8	intron_retention	FALSE	canonical	3	141	junction_2	7.71722460186015	30	88	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAGTCAAGAATCATTTC	NA	False	NA	NA	False	NA	NA	NA	53352831	53365318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_53353018_53354014_53360727_53362325_53362430_53365162
95877	chr7	+	1049	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	182	1	182	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	17	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396576	51397625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396600_51397600
95878	chr17	-	2301	6	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	574	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCACCACCGTCCCCTCG	2905	False	NA	NA	False	NA	NA	NA	29261225	29251646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29251759_29255212_29255421_29257461_29257597_29258425_29258881_29259744_29260265_29260354
95879	chr16	+	3566	9	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1315	junction_4	285.603281449986	20	34	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22930014_22930252_22930343_22930566
95880	chr15	+	1093	2	Genic_Genomic	ENSMUSG00000078300.4	novel	1002	1	NA	NA	-74	180	multi-exon	FALSE	canonical	0	0	junction_1	0	17	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	88	False	NA	NA	False	NA	NA	NA	12574900	12576156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_12575487_12575649
95881	chr4	-	5800	6	Fusion	ENSMUSG00000066000.13_ENSMUSG00000062518.8	novel	2594	5	NA	NA	-54	0	intron_retention	FALSE	non_canonical	0	0	junction_4	176.792533779003	109	137	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147787064	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147698506_147699736_147702956_147725368_147725463_147726820_147726940_147784759_147784854_147786902
95882	chr2	+	3898	15	NIC	ENSMUSG00000026718.18	novel	5000	14	NA	NA	5	941	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	78.2569029360532	336	14	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTCTGTCTTAGTTACG	4697	False	NA	NA	False	NA	NA	NA	14078923	14153292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14138453_14138520_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
95883	chr17	-	4427	3	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	-5	intron_retention	FALSE	canonical	3	2057	junction_1	159	36	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTAACTAGATGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	80514732	80508750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80512868_80513276_80513458_80514603
95884	chrX	+	14440	81	NNC	ENSMUSG00000025261.19	novel	14579	83	NA	NA	-29	-5	intron_retention	FALSE	canonical	0	0	junction_56	161.877499498077	675	102	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAATCCCAAGTAGTACTT	NA	False	NA	NA	False	NA	NA	NA	150586293	150718408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150586566_150589715_150589857_150618219_150618289_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150642450_150642685_150643162_150643265_150643664_150643746_150645293_150645401_150645647_150645826_150646868_150646961_150647557_150647770_150653454_150653513_150654475_150654653_150657528_150657775_150659290_150659425_150659808_150659904_150661713_150661906_150663495_150663713_150664073_150664197_150665487_150665726_150666074_150666306_150668577_150668701_150669078_150669175_150669739_150670010_150671379_150671533_150672664_150672793_150672985_150673068_150673725_150673903_150674012_150674173_150674735_150675095_150676818_150677015_150677916_150678085_150679558_150679705_150680182_150680250_150681439_150681658_150683896_150684109_150684494_150684678_150686824_150686998_150687349_150687499_150688351_150688428_150691723_150691953_150692404_150692584_150692855_150692946_150693096_150693257_150695204_150695251_150697141_150697430_150698587_150698844_150699036_150699168_150699821_150700037_150700114_150700404_150700546_150700650_150701376_150701924_150702571_150703182_150704041_150704158_150704257_150704415_150705327_150705461_150705691_150705895_150706474_150706603_150707657_150707758_150710626_150710786_150711148_150711395_150711758_150711877_150712339_150712481_150713058_150713347_150713459_150713566_150714734_150714853_150715544_150715727_150715935_150716127_150717276
95885	chr6	-	2369	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	338.961408916552	29	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	75	False	NA	NA	False	NA	NA	NA	30509672	30482413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492724_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509504
95886	chr7	-	6533	6	Intergenic	novelGene_2869	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	144	66	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	7557	False	NA	NA	False	NA	NA	NA	4463702	4188436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_4188519_4196110_4199408_4201778_4202521_4202686_4203011_4458508_4459983_4463088
95887	chr8	+	3696	23	NNC	ENSMUSG00000031731.17	novel	3692	23	NA	NA	-6	-15	intron_retention	FALSE	canonical	0	0	junction_6	46.8494158831788	3	86	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGGTTAAAGAAATCGTT	NA	False	NA	NA	False	NA	NA	NA	110505522	110587975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556312_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
95888	chr11	-	9969	28	NNC	ENSMUSG00000040481.18	novel	12036	30	NA	NA	32133	-9	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_26	20.0684015492201	100	91	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCCGTCCATCTGTGT	8877	False	NA	NA	False	NA	NA	NA	106990615	106923917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508_106965817_106967347_106967528_106968485_106968625_106969345_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106985827_106986017_106986541_106986752_106990391
95889	chr17	+	2959	3	NNC	ENSMUSG00000049672.16	novel	3625	3	NA	NA	66	-584	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	100.5	2	115	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCATTAAAGTAATTTCG	NA	False	NA	NA	False	NA	NA	NA	69690379	69697161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_69690400_69692415_69692500_69694306
95890	chr4	+	1435	2	NIC	ENSMUSG00000028689.15	novel	1335	4	NA	NA	64	-5	intron_retention	FALSE	canonical	3	73	junction_1	0	35	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCTTCACTCTTCCTCT	5815	False	NA	NA	False	NA	NA	NA	116565964	116567694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116567003_116567297
95891	chr12	-	445	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	-57	-40	-57	40	mono-exon	FALSE	NA	NA	NA	NA	NA	13	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	75678149	75677704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_75677700_75678100
95892	chr4	-	3250	20	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	1622	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	87.8115900451665	5	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	3172	False	NA	NA	False	NA	NA	NA	41121132	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115141_41115240_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006
95893	chr11	-	9820	28	NNC	ENSMUSG00000018068.14	novel	5906	25	NA	NA	-4	9298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	62.9343725937765	56	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCGCGGGGTGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	86148405	86092208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_86092376_86097775_86103628_86103716_86103894_86105736_86105843_86105969_86106078_86106372_86106625_86108561_86108761_86112931_86113058_86115768_86115971_86117463_86117629_86120026_86120132_86122790_86122900_86123908_86124086_86125497_86125633_86127364_86127434_86129084_86129200_86129290_86129363_86133738_86133865_86135228_86135456_86139635_86139810_86140047_86140179_86141793_86141908_86143083_86143187_86146171_86146311_86146848_86147156_86147247_86147324_86148029_86148242_86148330
95894	chr13	-	3043	22	Antisense	novelGene_ENSMUSG00000021500.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	40	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCGTGGCCAACGAAAAC	9366	False	NA	NA	False	NA	NA	NA	55826764	55782847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55783008_55785837_55786000_55793217_55793280_55795438_55795545_55798286_55798378_55799854_55799969_55800723_55800890_55801412_55801536_55801816_55801991_55802819_55802941_55806829_55806909_55808524_55808610_55811028_55811196_55811590_55811751_55813993_55814192_55817522_55817663_55818016_55818167_55821753_55821931_55823708_55823927_55824579_55824728_55825333_55825407_55826595
95895	chr6	+	814	5	NNC	ENSMUSG00000012396.13	novel	1995	5	NA	NA	4028	18807	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2174.94797351569	23	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAGAAGAGGGCATCAGA	NA	False	NA	NA	False	NA	NA	NA	122688554	122710399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122688763_122689587_122689675_122690100_122690484_122694260_122694303_122710305
95896	chr6	+	6564	23	NNC	ENSMUSG00000034269.13	novel	6755	22	NA	NA	2	-27	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	26.9635888554721	84	62	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTTTGATAATAAAATTCT	8082	False	NA	NA	False	NA	NA	NA	113054564	113130358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113054674_113055342_113055429_113081895_113082083_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528_113098772_113105372_113105503_113114913_113115162_113120573_113121045_113124400_113124700_113126515_113126650_113127062_113127152_113127822
95897	chr17	-	5935	24	NNC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	11	44942	intron_retention	FALSE	non_canonical	0	0	junction_1	82.065951623551	565	89	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCGCGCCGGCGCCCCCG	NA	False	NA	NA	False	NA	NA	NA	25459079	25407362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25407465_25408437_25408650_25418740_25418919_25420024_25420156_25424574_25424707_25427060_25427176_25428523_25428611_25429777_25429854_25432014_25432075_25437549_25437728_25447554_25447638_25448209_25448437_25449176_25449379_25449492_25449748_25450683_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454885_25458748_25458817_25458887_25458946_25459033
95898	chr7	-	1431	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	71	9	-13	-7	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	2	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGGGGGAGTCTGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	126398355	126394414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
95899	chr2	+	1170	2	Genic_Genomic	ENSMUSG00000064193.9	novel	1302	1	NA	NA	-46	320	multi-exon	FALSE	non_canonical	0	0	junction_1	0	195	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATATTTTCTA	NA	False	NA	NA	False	NA	NA	NA	80667438	80669106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_80668453_80668950
95900	chr13	-	3985	4	NIC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	8	3594	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	35.7988205888903	158	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACATTTTATTTCTGAC	5226	False	NA	NA	False	NA	NA	NA	74765421	74723882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_74727579_74728971_74729033_74729232_74729360_74765320
95901	chr1	+	6377	13	Antisense	novelGene_ENSMUSG00000005886.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	131	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGAGACCCCATGGCCCT	NA	False	NA	NA	False	NA	NA	NA	13209352	13245052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_13212997_13217098_13217191_13218542_13218742_13219156_13219330_13220910_13221142_13222601_13222681_13223020_13223300_13226593_13226762_13230386_13230514_13232295_13232512_13235118_13235327_13237119_13237331_13244302
95902	chr3	-	1589	12	NNC	ENSMUSG00000027715.10	novel	2965	8	NA	NA	1128	12240	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGCGGAAAACCGACGTCA	NA	False	NA	NA	False	NA	NA	NA	36619866	36606773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_36606899_36607181_36607277_36607952_36608072_36608185_36608290_36608784_36608922_36609627_36609713_36611010_36611144_36615249_36615339_36616164_36616314_36617221_36617404_36619363_36619444_36619575
95903	chr1	-	1438	10	NNC	ENSMUSG00000026000.17	novel	1385	10	NA	NA	243	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	200.209581546963	2	22	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	82	False	NA	NA	False	NA	NA	NA	67077750	67042533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67061391_67061508_67073282_67073401_67077653
95904	chr16	+	5101	17	Fusion	ENSMUSG00000022516.11_ENSMUSG00000022517.18	novel	3138	17	NA	NA	12	2	intron_retention	FALSE	canonical	0	0	junction_7	124.637960083395	5	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTTCTGAGTGCCATG	2955	False	NA	NA	False	NA	NA	NA	4704143	4758885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759_4757158_4757241_4757503_4758059
95906	chr2	+	6285	22	NNC	ENSMUSG00000027624.21	novel	6249	22	NA	NA	-312	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	49.0398976816413	300	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7329	False	NA	NA	False	NA	NA	NA	156262516	156385134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_156262593_156263024_156263220_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352652_156352802_156355947_156356131_156366800_156367209_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
95907	chr8	-	6099	7	FSM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	371	-1	371	1	multi-exon	FALSE	canonical	3	315	junction_2	32.4790530786981	197	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGAGGGTGGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	87611515	87567765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_87571670_87573442_87573551_87575074_87575183_87578252_87578350_87579786_87579918_87587053_87588739_87611449
95908	chr11	-	7532	24	Antisense	novelGene_ENSMUSG00000020790.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	148	22	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCTCGCGATAAATGCC	NA	False	NA	NA	False	NA	NA	NA	72662607	72580831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72580859_72602980_72603173_72605187_72605308_72619584_72619707_72621290_72621444_72623069_72623238_72629075_72629280_72630811_72630884_72631227_72631426_72637679_72637779_72640124_72640353_72640903_72641002_72641223_72641379_72642888_72643057_72644422_72644547_72645163_72645318_72646513_72646713_72648114_72648293_72649275_72649426_72650740_72650831_72651063_72651189_72652186_72652334_72655600_72655691_72658336
95909	chr11	-	2506	3	Intergenic	novelGene_2314	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	64	21	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446472_57447336_57448776_57450695
95910	chr1	+	4071	19	NNC	ENSMUSG00000037461.11	novel	3069	19	NA	NA	-4	-72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	89.1184016136557	2	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGTGTTTTACCTTTTT	8329	False	NA	NA	False	NA	NA	NA	191307883	191354786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347950_191349923_191350023_191351707_191351894_191353276
95911	SIRV6	+	1267	7	ISM	SIRV6A	SIRV612	1528	10	757	2	-441	-1	3prime_fragment	FALSE	canonical	0	0	junction_1	7675.93681036176	16	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAGAAGACCGGGAGTATA	NA	False	NA	NA	False	NA	NA	NA	1844	11823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV6_+_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
95912	chr17	+	6361	17	NNC	ENSMUSG00000061607.16	novel	649	4	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.8887672610153	25	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9541	False	NA	NA	False	NA	NA	NA	36152718	36170562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152775_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161406_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354_36169459_36169828
95913	chrUn_JH584304v1	-	5678	4	Intergenic	novelGene_4609	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	662	junction_3	99.6571901849313	8	89	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCCAACAATCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	59642	52195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985
95914	chr5	+	5254	3	Intergenic	novelGene_884	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	128	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGTTAACTAGGAAACTTC	NA	False	NA	NA	False	NA	NA	NA	144609484	144615629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_144610506_144611260_144615144_144615279
95915	chr7	+	2687	25	Genic_Genomic	ENSMUSG00000109168.2	novel	448	2	NA	NA	1463	19873	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	26	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGCCTGAGCGCTCTCT	NA	False	NA	NA	False	NA	NA	NA	28015785	28038171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_28015870_28016211_28016314_28016409_28016541_28016640_28016746_28016819_28016928_28017163_28017247_28018163_28018289_28018378_28018525_28019389_28019541_28019646_28019799_28021423_28021564_28021643_28021751_28021896_28021993_28023148_28023224_28023320_28023406_28025140_28025209_28025373_28025627_28028127_28028215_28028675_28028749_28028839_28028909_28029006_28029079_28029991_28030074_28030797_28030953_28037774_28037861_28038119
95916	chr8	-	2413	4	Antisense	novelGene_ENSMUSG00000031812.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	13	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGGAAGCTCGGCGGCG	NA	False	NA	NA	False	NA	NA	NA	122325396	122317115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_122317303_122320227_122320285_122322724_122322830_122323332
95917	chr11	+	7996	4	ISM	ENSMUSG00000020864.14	ENSMUST00000107818.9	3487	5	2488	-1484	2235	1484	3prime_fragment	FALSE	canonical	3	454	junction_2	20.8539897594894	14	76	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCAGACAGCACCAGTAC	6482	False	NA	NA	False	NA	NA	NA	94221314	94234151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_94224876_94225253_94225734_94229165_94229348_94230378
95918	chrUn_JH584304v1	-	2920	8	Intergenic	novelGene_4663	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	124	junction_5	321.845443957062	7	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	59707	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55702_56985_57152_57410_57500_58563_58836_59591
95919	SIRV1	-	1559	6	FSM	SIRV1A	SIRV101	1561	6	-1	3	-1	-3	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAATCGATGCATACTTC	NA	False	NA	NA	False	NA	NA	NA	10787	1003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
95920	chr2	+	2971	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	29	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	651	False	NA	NA	False	NA	NA	NA	26279357	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286011_26286167
95921	chr18	-	1685	13	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_6	54.9051581264355	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2827	False	NA	NA	False	NA	NA	NA	34884551	34866045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
95922	chr17	+	3887	1	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACACACACACTTCCGTGA	NA	False	NA	NA	False	NA	NA	NA	45878752	45882639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45878800_45882600
95923	chr7	+	635	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	37	7	-4	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	11	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	5959	False	NA	NA	False	NA	NA	NA	45367531	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
95924	chr5	+	929	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-24	-385	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	7941.6086251814	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACTGCTGCCCCTGCGGC	NA	False	NA	NA	False	NA	NA	NA	115697571	115701401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700634_115701347
95925	chr14	-	6483	19	Fusion	ENSMUSG00000022119.16_ENSMUSG00000091509.8	novel	3634	21	NA	NA	-22110	-2	multi-exon	FALSE	canonical	3	40	junction_2	62.453760673175	224	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGTTGTTAATGTTTTAA	NA	False	NA	NA	False	NA	NA	NA	105389883	105344188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_105347239_105349754_105349839_105350904_105350964_105351555_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754_105388995_105389727
95926	chr4	-	2239	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	33	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.152774954745	9	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGAGTCTTTGTGGTCA	NA	False	NA	NA	False	NA	NA	NA	137523662	137469042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469642_137469892_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
95927	chr12	+	5679	19	NNC	ENSMUSG00000035597.20	novel	4314	17	NA	NA	-13	10561	intron_retention	TRUE	non_canonical	0	0	junction_9	179.942214661496	6	67	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCCCGCCTCAATCC	7527	False	NA	NA	False	NA	NA	NA	65083126	65120721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_65083243_65089234_65089582_65090005_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102207_65102308_65102411_65102539_65103078_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197_65110550_65112510_65112577_65113413_65113550_65115773_65115886_65116726_65116827_65120588
95928	chr7	-	640	1	FSM	ENSMUSG00000067121.3	ENSMUST00000086958.3	862	1	271	-49	271	49	mono-exon	FALSE	NA	NA	NA	NA	NA	121	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAACTC	NA	False	NA	NA	False	NA	NA	NA	101223257	101222617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_101222600_101223300
95929	chr1	+	2789	19	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	70	-252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	661.555704848264	2	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGATTTTCTTTTTTATC	3217	False	NA	NA	False	NA	NA	NA	180396563	180428565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396572_180408164_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180416194_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
95930	chr8	+	4178	6	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-97	-592	multi-exon	FALSE	non_canonical	0	0	junction_5	443.975224533982	4	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGCAGGGGGTAAATTTA	NA	False	NA	NA	False	NA	NA	NA	20697887	20726674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149_20725918_20726091
95931	chr16	+	3049	10	ISM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	270	122	130	-122	intron_retention	FALSE	canonical	3	675	junction_9	455.970028254782	1	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTAAGTGTGAACTGGAC	6342	False	NA	NA	False	NA	NA	NA	22926796	22932558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
95932	chr17	-	2619	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	87	1025	-1	-4	multi-exon	FALSE	canonical	3	426	junction_6	74.0811964579343	7	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATTTTTTGTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	32540072	32523670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
95934	chr12	+	668	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	-36	-76	-36	76	mono-exon	FALSE	NA	NA	NA	NA	NA	75	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTCAATAATGCAT	NA	False	NA	NA	False	NA	NA	NA	67557493	67558161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_67557500_67558200
95935	chr13	-	2961	5	NNC	ENSMUSG00000094942.8	novel	2310	4	NA	NA	-13	597	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	30.8017856625229	209	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTTAATCAACACCCAATAA	NA	False	NA	NA	False	NA	NA	NA	62531004	62515544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62518166_62519376_62519438_62519623_62519751_62529443_62529485_62530893
95936	chr4	+	3210	2	Genic_Genomic	ENSMUSG00000081998.2_ENSMUSG00000073716.7	novel	260	1	NA	NA	187	1388	multi-exon	FALSE	canonical	3	12	junction_1	0	51	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACATTTGAATCCACAGG	NA	False	NA	NA	False	NA	NA	NA	146559975	146566771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146561061_146564646
95937	chr10	-	3536	19	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	394	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.56405583785	1	72	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175927	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105705_62105803_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
95938	chr10	+	3115	6	Fusion	ENSMUSG00000025355.8_ENSMUSG00000025354.6	novel	3402	9	NA	NA	-4034	-1226	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	6	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTAAGGGGTGGGGCCG	NA	False	NA	NA	False	NA	NA	NA	128635896	128641263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_+_128637099_128637219_128637381_128637804_128638386_128638965_128639225_128639868_128640046_128640528
95939	chr13	+	7717	20	Fusion	ENSMUSG00000021714.16_ENSMUSG00000021712.16	novel	3416	11	NA	NA	3	-2199	multi-exon	FALSE	non_canonical	0	0	junction_10	105.4733690509	992	19	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTCCCCGAGCCGCGGC	NA	False	NA	NA	False	NA	NA	NA	104315349	104365351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104337738_104342156_104343606_104343793_104344506_104344585_104346119_104346304_104350033_104350222_104353594_104353788_104356544_104356993_104359345_104359466_104359598_104359703_104361858_104361961_104365113
95940	chr14	-	3679	16	ISM	ENSMUSG00000022119.16_ENSMUSG00000091509.8	ENSMUST00000022715.14	3633	22	25844	-1491	-21146	1393	3prime_fragment	FALSE	canonical	3	64	junction_9	53.7921927420699	18	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATTCTGATTCATTAGGT	NA	False	NA	NA	False	NA	NA	NA	105388919	105351007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526_105376599_105377751_105377884_105378631_105378797_105380126_105380287_105381614_105381727_105387688_105387830_105388184_105388326_105388754
95941	chrUn_JH584304v1	+	3610	8	Intergenic	novelGene_4583	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_1	14.9557169466313	24	47	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGTTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	4975	33129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_5089_14083_14202_19242_19346_20219_20377_24796_24959_26983_28146_29421_29520_31432
95942	chr3	+	2630	13	NIC	ENSMUSG00000039068.17	novel	7539	14	NA	NA	1	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	85.6671125150525	5	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTATATCATAGAAAGCT	NA	False	NA	NA	False	NA	NA	NA	152102321	152165101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_152102399_152125651_152125778_152128254_152128409_152152435_152152575_152154415_152154564_152154649_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
95943	chr1	+	3433	26	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	1669	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	225.435486115208	8	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTCCTGCTTGCCGTTTC	977	False	NA	NA	False	NA	NA	NA	171928971	171949891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266_171949553_171949627
95944	chr6	+	2651	12	NNC	ENSMUSG00000051855.16	novel	2665	13	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_11	94.433675181391	858	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGATTCCGGCTTCCCC	0	True	NA	NA	False	NA	NA	NA	30738051	30748458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30746954
95945	chrX	-	4903	13	NIC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	0	-17	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	75.9910447940341	28	39	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCCTTTTGACTCCTTTGC	NA	False	NA	NA	False	NA	NA	NA	104972953	104895059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972705
95946	chrX	+	2445	7	Antisense	novelGene_ENSMUSG00000085556.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	88	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGACCCCAACGGTTC	NA	False	NA	NA	False	NA	NA	NA	134021375	134053345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_134023003_134023444_134023742_134044967_134045071_134048329_134048424_134050174_134050265_134051691_134051783_134053202
95947	chrM	+	616	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	528	0	528	0	mono-exon	FALSE	NA	NA	NA	NA	NA	415	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	0	True	NA	-28	True	NA	NA	NA	14672	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14700_15300
95948	chr16	-	564	1	Intergenic	novelGene_3771	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
95949	chr17	-	812	1	Intergenic	novelGene_163	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37502901	37502089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_37502100_37502900
95951	chr7	+	1437	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2812.33170743656	25	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503494_46504510
95954	chr1	-	2039	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	-133	-5	-3	1	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	1946	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGAGCTCTCTGTGTACT	NA	False	NA	NA	False	NA	NA	NA	135186309	135181311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
95955	chr12	+	2484	5	FSM	ENSMUSG00000004789.11	ENSMUST00000223438.2	732	5	-338	-1414	6	-10	multi-exon	FALSE	canonical	3	342	junction_3	10.5682306939241	51	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCAAACAGGGCTCCGGG	NA	False	NA	NA	False	NA	NA	NA	85174517	85180852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
95956	chr10	-	3438	18	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	391	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.927318488833	2	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAAGTCGGAGTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	62175930	62104888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105654_62107377_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120627_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
95957	chr4	+	3060	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	4	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	38.577195336105	485	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206904	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146291416_146291510_146293441_146293573_146368115_146368239_146384286_146384431_146388486_146388614_146390758_146390904_146391317_146392124_146392460_146393416_146552596
95958	chr4	+	1715	8	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	284	749	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	197.282869535712	4	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTGAGGAGCTTACT	5332	False	NA	NA	False	NA	NA	NA	89055642	89098460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074880_89089333_89089468_89090381_89090622_89095039_89095163_89097704
95959	chr8	-	4125	4	Antisense	novelGene_ENSMUSG00000095403.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCGCCTGAGCCATCAGT	NA	False	NA	NA	False	NA	NA	NA	21122605	21112920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_21113052_21116682_21116803_21118694_21120587_21120623
95960	chr11	-	3173	13	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	1188	21	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_6	11.9536140513607	29	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAAAATCTCTGACTAT	NA	False	NA	NA	False	NA	NA	NA	106956843	106933845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771
95961	chr5	+	387	1	Intergenic	novelGene_936	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
95962	chr11	-	2839	6	NNC	ENSMUSG00000016984.8	novel	4185	6	NA	NA	13	-1138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	71.6519364706914	1	6	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAACTTGGTTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	17903862	17889893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_17890351_17895606_17897568_17897774_17897888_17902251_17902329_17902577_17902704_17903757
95963	chr13	+	2090	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-29	250	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	91.7234293951115	3	90	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACCTCATGAACATAA	NA	False	NA	NA	False	NA	NA	NA	66261264	66270900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66270253_66270334
95965	chr11	+	2944	12	NNC	ENSMUSG00000010554.15	novel	2054	12	NA	NA	-4	792	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	182.031602015231	589	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTATTGATCCTGTTT	8490	False	NA	NA	False	NA	NA	NA	74661651	74709512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686577_74686644_74686807_74686951_74694656_74694727_74696078_74696169_74699354_74699484_74707695_74707870_74707984
95966	chr13	+	1507	3	Antisense	novelGene_ENSMUSG00000114262.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	31	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAGAGGAAAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	66475427	66751355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66475847_66518565_66519514_66751215
95967	chr17	-	6352	11	NNC	ENSMUSG00000096780.8	novel	1859	9	NA	NA	3062	8346	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	400.275655017889	6521	94	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCGCAGGCGCGGTCA	NA	False	NA	NA	False	NA	NA	NA	6713432	6697576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699322_6702404_6702530_6702867_6702945_6703293_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6713365
95968	chr10	-	1667	14	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-19	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	661.603896584906	4	5	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAATGTCTTACTGATCTG	NA	False	NA	NA	False	NA	NA	NA	116899738	116886906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116897403_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
95969	chr11	-	1132	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-77	-53	-77	53	mono-exon	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACTCGGCCCCCAACACT	4384	False	NA	NA	False	NA	NA	NA	20286090	20284958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20285000_20286100
95970	chr15	+	2050	5	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	1118	intron_retention	FALSE	canonical	3	5295	junction_1	2521.41096412306	15	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCTCTGGTGTAATAGC	NA	False	NA	NA	False	NA	NA	NA	76788284	76791632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788310_76788502_76788881_76789017_76789237_76790055_76790172_76790320
95971	chr13	+	4100	1	ISM	ENSMUSG00000045767.10	ENSMUST00000057844.10	4652	2	6277	0	6277	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTACTACTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	55847213	55851313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55847200_55851300
95972	chr4	+	4564	6	ISM	ENSMUSG00000029028.15	ENSMUST00000030894.15	3395	7	3953	-1903	-1658	1902	3prime_fragment	FALSE	canonical	3	350	junction_5	41.1698919114442	138	56	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCCCCAGCTTGCCAGAG	NA	False	NA	NA	False	NA	NA	NA	154100212	154107872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087
95973	chr11	+	3262	11	NIC	ENSMUSG00000002129.12	novel	4920	16	NA	NA	-7180	1109	intron_retention	FALSE	canonical	3	694	junction_7	92.467778171642	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGTGAGATACTGTGT	NA	False	NA	NA	False	NA	NA	NA	4120367	4130528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4128226_4129140_4129243_4129353_4129426_4130033
95974	chr2	+	8215	17	NIC	ENSMUSG00000036617.18	novel	7197	21	NA	NA	-175	0	intron_retention	FALSE	canonical	2	6	junction_15	53.1356974523719	6	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTACCTTGTC	4621	False	NA	NA	False	NA	NA	NA	20524426	20815165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20810395_20810474_20810585
95976	chr4	+	6233	10	FSM	ENSMUSG00000028414.18	ENSMUST00000221657.2	6241	10	6	2	6	-2	multi-exon	FALSE	canonical	1	1	junction_1	14.3819159423506	137	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTTTGTGTTTGTTTTT	23	True	NA	NA	False	NA	NA	NA	53714193	53765783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_53714547_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
95977	chr2	-	2552	11	Genic_Genomic	ENSMUSG00000074890.5	novel	3056	1	NA	NA	-16012	-2879	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	60	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGGACCCGTGCGGCGC	NA	False	NA	NA	False	NA	NA	NA	120987146	120970957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_120971147_120972572_120972784_120973003_120973136_120973629_120973690_120975168_120975266_120976518_120976613_120980713_120980828_120981611_120981691_120982908_120983046_120985195_120985297_120985808
95978	chr3	-	2766	8	NNC	ENSMUSG00000074398.6	novel	1653	4	NA	NA	-4051	-2208	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	114	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTCTGGAAACCCCGAG	NA	False	NA	NA	False	NA	NA	NA	96469182	96465311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_96465799_96466201_96466279_96466383_96466532_96466646_96466750_96466902_96467159_96467249_96467411_96467529_96467674_96467792
95979	chr15	+	992	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4542.52452277365	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	76788284	76790514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789324_76789994_76790172_76790320
95980	chr7	+	2944	19	NNC	ENSMUSG00000030978.11	novel	3997	19	NA	NA	-36	244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	225.901294953633	2	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	NA	NA	NA	102091053	102118133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_102091251_102092193_102092287_102095816_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
95981	chr2	-	755	6	NIC	ENSMUSG00000039128.14	novel	600	7	NA	NA	-14	-116	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	565.377962074929	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTGATTCTGGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	5849766	5814481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_5814830_5815606_5815656_5826086_5826194_5838466_5838525_5846763_5846836_5849645
95982	chr2	-	6848	36	NIC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	43	-763	combination_of_known_splicesites	FALSE	canonical	3	18	junction_34	49.0353142216538	2	180	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACTTTGTAGTTTATT	NA	False	NA	NA	False	NA	NA	NA	59955998	59730551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_59731147_59731818_59731963_59732069_59732336_59733502_59733650_59737259_59737396_59737887_59738094_59742025_59742187_59742745_59742902_59743072_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59907213_59907256_59955806
95983	chr11	+	2911	14	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	1	173	intron_retention	FALSE	canonical	2	6	junction_10	64.5157656985379	71	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	NA	False	NA	NA	NA	29476450	29495452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490822_29491340_29491482_29492344_29492510_29494269_29494411_29494912
95984	chr6	+	2315	12	ISM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	101	37	-44	11	intron_retention	FALSE	canonical	3	738	junction_2	59.9046073643011	19	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACGAAATAAAACTCTTT	NA	False	NA	NA	False	NA	NA	NA	124640090	124681344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457
95985	chr14	-	2584	2	ISM	ENSMUSG00000022223.10	ENSMUST00000228151.2	385	4	1	-1847	0	-4	intron_retention	FALSE	canonical	3	161	junction_1	0	71	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGATCACTGGCTTCCGCTG	NA	False	NA	NA	False	NA	NA	NA	56137668	56134743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_56136763_56137103
95986	chr6	-	4963	6	NNC	ENSMUSG00000029752.13	novel	2016	12	NA	NA	75	4	intron_retention	FALSE	canonical	0	0	junction_5	3402.83907347967	44	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	NA	False	NA	NA	False	NA	NA	NA	7682283	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7681571_7681650
95987	chr5	+	2143	5	Antisense	novelGene_ENSMUSG00000046798.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTCACCCACTCCGAGCCG	NA	False	NA	NA	False	NA	NA	NA	5555160	5564788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_5555671_5557122_5558455_5561070_5561124_5563164_5563250_5564625
95988	chr3	+	3704	23	NIC	ENSMUSG00000025437.16	novel	3886	24	NA	NA	-1	7	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	116.242266249458	2	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTTGAATTTATTTGAT	NA	False	NA	NA	False	NA	NA	NA	152052150	152098977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
95990	chr9	+	3225	1	ISM	ENSMUSG00000032012.10	ENSMUST00000034510.9	5653	6	60253	0	10116	0	mono-exon	FALSE	NA	NA	NA	NA	NA	147	25	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAAGTGCCTCTTGTCAC	NA	False	NA	NA	False	NA	NA	NA	43715533	43718758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_43715500_43718800
95991	chr11	-	2359	17	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	280.495515784121	11	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTCAAAAATTTGACTTTG	NA	False	NA	NA	False	NA	NA	NA	70860788	70833912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835011_70835307_70835389_70835498_70835566_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
95992	chr7	-	3609	8	NNC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	274.588374681457	2	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATATAGTCTTTTGAATG	NA	False	NA	NA	False	NA	NA	NA	118454907	118441443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118442787_118442883_118442976_118443923_118444096_118444462_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
95993	chr11	+	2855	11	NNC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	29	797	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	158.426670734444	43	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGATCCTGTTTGAATC	8523	False	NA	NA	False	NA	NA	NA	74661684	74709517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664476_74665150_74665285_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
95994	chr4	+	7575	46	NIC	ENSMUSG00000066036.15	novel	15798	106	NA	NA	8529	-14	intron_retention	FALSE	canonical	0	0	junction_10	83.1495276632242	1	76	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTACACATTGGAAAGGG	NA	False	NA	NA	False	NA	NA	NA	139170849	139216827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_139170885_139171905_139172003_139172554_139172663_139173169_139173287_139174169_139174380_139176132_139176283_139177625_139177854_139178556_139178636_139179038_139179285_139179881_139180051_139180445_139180591_139181282_139181369_139182477_139182566_139182758_139182953_139184842_139185083_139185405_139185545_139186109_139186236_139186336_139186466_139187309_139187654_139189138_139189230_139189488_139189574_139189712_139189841_139190590_139190721_139190808_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139213459_139216477
95995	chr1	-	1193	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACTCACGCGGCGCCAGAA	9071	False	NA	NA	False	NA	NA	NA	86458408	86454444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
95996	chr1	-	5194	5	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	-811	-642	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	175.941751724825	5	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAATGTCGGTCTGCCCTGC	6280	False	NA	NA	False	NA	NA	NA	88199480	88190834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_88193794_88193874_88194381_88195669_88195749_88197042_88197136_88197923
95997	chr13	-	2746	5	Genic_Genomic	ENSMUSG00000114434.2	novel	1508	1	NA	NA	-201812	-500	multi-exon	TRUE	canonical	0	0	junction_3	8.52569645248997	20	35	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATACAGGAGAGAAACCGTG	4250	False	NA	NA	False	NA	NA	NA	66901096	66698276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66700522_66700722_66700807_66710599_66710819_66736935_66737039_66901001
95998	chr2	+	4188	13	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	-1294	969	intron_retention	FALSE	non_canonical	0	0	junction_1	867.964941048248	30	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCGCCCCGACTCTGC	NA	False	NA	NA	False	NA	NA	NA	162899974	162925588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162900464_162901021_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
95999	chr17	+	4921	2	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	-57625	-20791	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	65	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTATTCGATATTAGAATG	NA	False	NA	NA	False	NA	NA	NA	17284051	17346302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284262_17341591
96000	chr16	+	3792	8	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-5	intron_retention	FALSE	canonical	3	675	junction_7	471.489130309491	6	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6053	False	NA	NA	False	NA	NA	NA	22926507	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927602_22927869_22928010_22928734_22928904_22928983_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
96001	chrM	+	752	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	32	0	32	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCTTAGTATAATTAAT	20	False	NA	NA	False	NA	NA	NA	8638	9390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_8600_9400
96002	chr7	-	4910	6	NNC	ENSMUSG00000030980.18	novel	5524	6	NA	NA	-17	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	296.709015703938	1	109	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTTTGAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	118454871	118441439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118451913_118452039_118452564_118454845
96003	chr15	+	1228	6	NNC	ENSMUSG00000009585.19	novel	1953	9	NA	NA	-124	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	302.110840586696	16	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGACAAGATTAAGTTGT	8122	False	NA	NA	False	NA	NA	NA	79776479	79792110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79776641_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783274_79791636
96004	chr8	+	2697	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	-69	0	-69	0	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	69	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGTTCTGTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	57964871	57969033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
96005	chr17	+	2904	14	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	9	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	640.821347959008	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGGGCAGTGGTGGCGC	429	False	NA	NA	False	NA	NA	NA	56610329	56630476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56619147_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
96006	chr2	-	3939	8	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	14	-10	intron_retention	FALSE	canonical	3	4406	junction_5	133.764032260285	87	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAGAAAATCAGTCTCAT	9518	False	NA	NA	False	NA	NA	NA	10085307	10060850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
96007	chrUn_JH584304v1	-	3137	4	Intergenic	novelGene_4683	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	381.907784099193	15	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGATGTGTTGTCCTGG	NA	False	NA	NA	False	NA	NA	NA	59688	53139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_56138_58549_58836_59591
96008	chr5	+	2079	5	NNC	ENSMUSG00000066613.15	novel	868	5	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	103.303860044047	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATC	8373	False	NA	NA	False	NA	NA	NA	110144389	110158274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110144500_110151218_110151319_110154852_110154937_110155121_110155130_110156497
96009	chr12	-	1599	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7551	junction_5	321.637477086652	47	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637782_111637858_111638014_111638199_111638408_111638663
96010	chr13	-	2019	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	1931.89781519814	5	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTATTTTTGGTGGTCTTT	4766	False	NA	NA	False	NA	NA	NA	58550315	58539768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
96011	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
96012	chr13	+	2494	4	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24298	478	intron_retention	FALSE	canonical	3	24	junction_3	9.56846672960488	79	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAATAAAGTTTCTTCC	NA	False	NA	NA	False	NA	NA	NA	66901206	66927684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66901313_66924718_66924862_66925311_66927256_66927383
96013	chr13	+	6956	47	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	4	68210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	470.706483963593	210	47	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGGCCCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	6598198	6698761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603359_6605385_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608294_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685_6630159_6630209_6631628_6632437_6632544_6634638_6634739_6636517_6636628_6637086_6637150_6638524_6638690_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653500_6654991_6655117_6655670_6655765_6664739_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675249_6685959_6686037_6698608
96014	chr18	-	3824	1	Intergenic	novelGene_4505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	28	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCACATGTGATTCTTAA	NA	False	NA	NA	False	NA	NA	NA	10276052	10272228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_10272200_10276100
96015	chr15	+	2852	10	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	61	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	279.670043682432	22	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-33	True	NA	NA	NA	101982359	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992638_101998364_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
96016	chr5	+	3993	27	NNC	ENSMUSG00000013629.17	novel	7137	44	NA	NA	1831	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_23	223.577938702718	2	33	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	4698	False	NA	NA	False	NA	NA	NA	31225469	31235823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234760_31234813_31234851_31234941_31235041_31235232_31235328_31235436
96017	chr8	-	4589	4	Antisense	novelGene_ENSMUSG00000110458.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	69	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGGCGCCTGGCCATAG	NA	False	NA	NA	False	NA	NA	NA	20727060	20697891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20698084_20711888_20712253_20721118_20721239_20723147
96018	SIRV5	+	4048	16	NIC	SIRV5A	novel	1890	17	NA	NA	1239	0	combination_of_known_junctions	FALSE	canonical	3	1532	junction_15	3086.2612159915	3	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	2295	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
96019	chr13	+	3021	10	NNC	ENSMUSG00000074867.5	novel	1379	3	NA	NA	-290455	519	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.28190702864	5	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	61987244	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61987306_62293449_62294066_62317255_62317383_62317567_62317629_62318963_62319241_62319323_62319483_62319566_62320193_62320444_62320638_62320721_62321024_62321153
96020	chr2	+	6518	19	NNC	ENSMUSG00000036617.18	novel	407	3	NA	NA	-61457	-5	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	67.062068173106	1	206	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTTTTTTTTTGTACC	1510	False	NA	NA	False	NA	NA	NA	20656664	20815160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_20656695_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790279_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20810395_20810474_20810585_20812185_20812712_20812836_20813520
96021	chrX	-	4304	3	NIC	ENSMUSG00000031167.17	novel	1274	6	NA	NA	1	53	intron_retention	FALSE	canonical	3	1172	junction_2	71.5	189	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCTCCCCAAACACCCAG	6563	False	NA	NA	False	NA	NA	NA	8011934	8006969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_8009991_8010086_8011312_8011876
96022	chr17	-	2743	15	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	50	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	186.464761128898	6	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2234	False	NA	NA	False	NA	NA	NA	45744613	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722858_45726501_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
96023	chr15	-	3276	6	NNC	ENSMUSG00000022285.18	novel	2285	6	NA	NA	-83	489	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1680.76906206653	4	141	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCCCTAATTGTCCCAAA	675	False	NA	NA	False	NA	NA	NA	36793846	36770524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791224_36793747
96024	chr8	-	5963	5	FSM	ENSMUSG00000110444.3	ENSMUST00000213012.2	7778	5	-10	1825	-4	-1825	multi-exon	FALSE	canonical	2	5	junction_3	16.5	104	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGGTATTACAAACTGCA	NA	False	NA	NA	False	NA	NA	NA	69848184	69820986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_69826560_69827709_69827771_69827957_69828085_69829137_69829248_69848092
96026	chr6	-	3577	12	NNC	ENSMUSG00000029826.15	novel	3400	9	NA	NA	-554	882	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	34.3576233315364	1	69	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTGCACATAAGATAAAAAT	9770	False	NA	NA	False	NA	NA	NA	38332092	38291720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_38291839_38292012_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309076_38309109_38309633_38310124_38313346_38313600_38317154_38317291_38330849_38331470_38332029
96027	chr15	-	1691	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	78	84	14	-84	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	293	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601872	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
96028	chr17	+	2260	1	Intergenic	novelGene_200	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	563	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCGCGTGTTGGGGCCTGC	NA	False	NA	NA	False	NA	NA	NA	40153887	40156147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156100
96029	chr15	+	2133	9	NNC	ENSMUSG00000023010.16	novel	2452	10	NA	NA	968	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	612.366605372141	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGTGTCTCAGTGTTAA	4688	False	NA	NA	False	NA	NA	NA	99299933	99307928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355_99307390_99307471
96030	chrX	-	4126	29	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	147	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	167.066908874308	1	60	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGGTTCCACAAATTGATA	NA	False	NA	NA	False	NA	NA	NA	59224302	59101333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59106131_59106198_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128343_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
96031	chr1	+	5636	28	Intergenic	novelGene_416	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	92	10	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCCCCCGCCCCCAGC	NA	False	NA	NA	False	NA	NA	NA	93334309	93406537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_93335984_93336092_93336220_93336410_93336525_93336669_93336859_93340084_93340228_93341211_93341350_93341550_93341659_93342539_93342689_93344222_93344365_93344896_93345120_93345192_93345413_93347793_93348013_93348808_93348938_93349064_93349150_93350983_93351098_93351489_93351596_93352987_93353129_93355279_93355359_93355869_93355974_93357097_93357202_93357814_93358029_93358678_93358890_93359026_93359273_93364814_93365034_93365949_93366105_93368399_93368517_93369910_93369976_93406436
96032	chr7	-	2702	2	NIC	ENSMUSG00000040435.13	novel	2333	3	NA	NA	37	-5	intron_retention	FALSE	canonical	3	356	junction_1	0	19	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGATAAACTCTTACGTG	3898	False	NA	NA	False	NA	NA	NA	45175655	45172350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45174816_45175418
96035	chr7	+	4233	7	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	0	-14	intron_retention	FALSE	non_canonical	0	0	junction_1	258.097795849213	1	107	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTAAGTCCTTAGGAGGT	624	False	NA	NA	False	NA	NA	NA	4743154	4750499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743239_4743286_4744981_4745120_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
96036	chr4	-	1737	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	25	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	2602	False	NA	NA	False	NA	NA	NA	129229053	129203309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203674_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
96037	chr7	+	4254	25	FSM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	44	2	0	-2	multi-exon	FALSE	canonical	3	158	junction_8	10.558616149856	176	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGAGTGCCTGTGTGTCCT	543	False	NA	NA	False	NA	NA	NA	110628201	110655582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652686_110653020_110653134_110654565
96038	chr11	-	487	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	60	512	5	-1	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	284	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGAGCTGGTCTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	97673203	97668864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
96040	chr17	+	4465	22	FSM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	0	-1116	0	1116	multi-exon	FALSE	canonical	3	146	junction_8	22.4045468336421	17223	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTAAATTTAGCAC	NA	False	NA	NA	False	NA	NA	NA	45817766	45832885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
96041	chr6	-	506	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	4	7	4	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	145	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115785704	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
96042	chr5	+	1259	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-68	-189	-68	189	mono-exon	FALSE	NA	NA	NA	NA	NA	10	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	96009504	96010763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
96043	chr1	-	1074	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGCTGCCGGAGTCCGCG	9076	False	NA	NA	False	NA	NA	NA	86458403	86454558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
96044	chr2	-	4871	8	Antisense	novelGene_ENSMUSG00000033943.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	89	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCAGAACTAGAAATGCCAC	NA	False	NA	NA	False	NA	NA	NA	119797880	119778522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119778773_119781564_119781710_119783369_119783402_119788631_119788844_119790819_119790915_119791193_119791435_119792263_119792449_119794169
96045	chr4	-	5766	27	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	2	18874	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.169816742946	149	61	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGAATGACACCCGCGGG	NA	False	NA	NA	False	NA	NA	NA	115980880	115932586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115932804_115936584_115936671_115937743_115937815_115945641_115946766_115950067_115950328_115952071_115952237_115952327_115952427_115952986_115953111_115953338_115953413_115953516_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115976034_115976155_115980092_115980180_115980258_115980514_115980610
96047	chr2	-	2307	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	5	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5551.41300565676	3	97	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3764	False	NA	NA	False	NA	NA	NA	154734723	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715584_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
96048	chr1	-	5775	17	NNC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	-11	3	intron_retention	FALSE	non_canonical	0	0	junction_5	142.451252626995	3	206	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTAGTTCTTATCATTAT	NA	False	NA	NA	False	NA	NA	NA	133589129	133547605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553678_133554517_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581706_133583137_133588974
96050	chr8	-	575	3	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	1958	-376	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3857.5	1	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATCTCCCTGCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	46662109	46660209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660593_46661434_46661576_46662058
96051	chr5	+	2273	15	NNC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	12	-5	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_14	97.9740698723235	4	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGTAGTTTGTTGTGGC	9211	False	NA	NA	False	NA	NA	NA	110987877	111022006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111020316_111020447_111021345
96052	chr11	+	2791	15	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	15	161	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	61.3790913678498	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTTAAAAAAATGGTAAAT	NA	False	NA	NA	False	NA	NA	NA	29476471	29495440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_29476566_29476692_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
96053	chr8	+	3268	21	NNC	ENSMUSG00000032939.15	novel	2928	23	NA	NA	5952	-14	intron_retention	FALSE	non_canonical	0	0	junction_8	348.088246713387	3	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTTCTTTTAAACATTCT	NA	False	NA	NA	False	NA	NA	NA	94947185	95041474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027391_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
96054	chr5	+	3522	14	NIC	ENSMUSG00000019518.12	novel	3479	15	NA	NA	0	-7	intron_retention	FALSE	canonical	3	48	junction_6	10.1742219800537	343	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGGTATGGTGGTGCAT	8122	False	NA	NA	False	NA	NA	NA	138170308	138178684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176443_138176538
96055	chr1	-	3082	19	NNC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	9	-434	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	202.659394667293	941	23	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACATGAAACCTGCTGG	NA	False	NA	NA	False	NA	NA	NA	58544105	58502363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58520981_58521096_58522801_58522863_58532015_58532048_58532819_58532910_58536530_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
96056	chr16	+	1629	9	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	793.051700710616	1	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929462_22931145_22931204_22931916
96057	chr9	+	656	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	2	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6544.36268554853	28	3	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGTGGTAAATCTCATG	NA	False	NA	NA	False	NA	NA	NA	120400581	120403488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_120400590_120401192_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
96058	chr4	+	4600	7	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-24	326	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.367085517514	79	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146093369	146135651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093555_146094927_146095022_146102109_146102186_146126781_146126867_146129876_146130004_146131535_146135101_146135183
96059	chr15	-	1247	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	681.347704096485	1	76	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTTTGTGTGTATTTAT	NA	False	NA	NA	False	NA	NA	NA	51728879	51649957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662591_51662756_51705863_51706021_51728721
96060	chr16	-	5745	32	NNC	ENSMUSG00000064061.14	novel	5820	32	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	28.2705083810091	150	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTTCTTTATGTATT	4273	False	NA	NA	False	NA	NA	NA	48814452	48744594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780121_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
96061	chr8	-	2887	9	NIC	ENSMUSG00000052488.8	novel	3646	18	NA	NA	3	-3589	intron_retention	FALSE	canonical	3	416	junction_4	62.9205848669575	5	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGCCTCCACATCCCCAC	NA	False	NA	NA	False	NA	NA	NA	73228976	73218062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_73218364_73220226_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
96062	chr8	+	5818	15	NNC	ENSMUSG00000038497.8	novel	4335	13	NA	NA	-32227	7167	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.5650424249522	151	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTGTAAAGTGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	13305962	13361252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_13307975_13308943_13309043_13311383_13311468_13321589_13321719_13328514_13328688_13330910_13331126_13337803_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358348_13358467_13360144
96063	chr9	-	1737	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	4	53	-4	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	18	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
96064	chr17	+	5115	21	NIC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	6	60039	combination_of_known_splicesites	TRUE	canonical	3	64	junction_20	27.9703414351702	57	45	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTGCAAGTCCTTTC	9722	False	NA	NA	False	NA	NA	NA	3165529	3309173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219601_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3308012
96065	chr5	+	3753	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4857	-208	intron_retention	FALSE	non_canonical	0	0	junction_4	843.387134935671	1	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTGAACACCAGCAGTAT	NA	False	NA	NA	False	NA	NA	NA	108208682	108256662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241270_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255375_108255449
96066	chr2	-	4754	26	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39358	1440	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_18	31.626166381653	38	14	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCCAGAAGGTAGGTACA	1528	False	NA	NA	False	NA	NA	NA	59881056	59743083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
96067	chr15	-	5215	2	FSM	ENSMUSG00000072568.5	ENSMUST00000100635.5	5565	2	120	230	120	-230	multi-exon	FALSE	canonical	3	40	junction_1	0	87	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTCAGTGTATGACTTT	NA	False	NA	NA	False	NA	NA	NA	60696809	60691072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_60695841_60696362
96068	chr13	-	2576	15	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	7	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2558.70782618804	14	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATGATGTTAGTTATGAC	4772	False	NA	NA	False	NA	NA	NA	58550309	58539063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542433_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
96069	chr16	+	8377	12	FSM	ENSMUSG00000022961.19	ENSMUST00000117633.8	8731	12	342	12	-31	0	multi-exon	FALSE	canonical	3	185	junction_11	92.9729366114073	396	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTGTCTTATTCTCTGG	NA	False	NA	NA	False	NA	NA	NA	91444735	91476083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
96070	chr6	-	7521	19	NIC	ENSMUSG00000030172.16	novel	8760	21	NA	NA	1	763	intron_retention	FALSE	canonical	3	90	junction_15	15.3676146570284	112	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGTTATAGAACTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	119825094	119548827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_119552724_119571745_119571935_119597271_119597371_119607563_119607709_119671531_119671693_119690640_119690773_119699133_119699270_119720248_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119754948_119755033_119756437_119756594_119760349_119760425_119773867_119774285_119801346_119802171_119824837
96071	chr13	+	2702	7	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	2	519	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	116.419380784396	6	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62277748	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277977_62317255_62317383_62317567_62317629_62318963_62319241_62319407_62320193_62320444_62320638_62320721
96072	chr5	-	6414	2	ISM	ENSMUSG00000092060.5	ENSMUST00000201528.2	7278	5	27375	0	27088	0	3prime_fragment	FALSE	canonical	3	56	junction_1	0	190	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTGACTTGATTTTTT	NA	False	NA	NA	False	NA	NA	NA	67557585	67549490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_67555794_67557474
96073	chr6	-	4717	23	NNC	ENSMUSG00000015766.15	novel	4567	22	NA	NA	-16824	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	43.1976286845348	94	35	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATCACCTGGTTGAAAAT	554	False	NA	NA	False	NA	NA	NA	137648698	137454248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137568415_137568491_137647823_137647883_137648367
96074	chr17	+	619	6	NNC	ENSMUSG00000037805.16	novel	830	6	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3148.35038710751	8	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGCCTTGGTGTGCCTGTG	NA	False	NA	NA	False	NA	NA	NA	28547559	28550003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548497_28549498_28549587_28549810
96075	chr2	+	3994	5	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	5	2548	intron_retention	FALSE	canonical	0	0	junction_2	92.1737489744233	9	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177190012	177204104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177199035_177199097_177200246_177200906_177200983
96076	chr11	+	2799	4	ISM	ENSMUSG00000037331.16	ENSMUST00000071487.13	6614	19	43558	2337	11009	-2337	intron_retention	FALSE	canonical	3	669	junction_2	6.54896090146283	100	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCCTTGAGCCTCCGG	NA	False	NA	NA	False	NA	NA	NA	57943447	57950520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57943558_57946292_57946438_57947879_57947990_57948086
96077	chrX	+	1227	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	13	0	-13	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	9	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCCAAAACCAGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	36059303	36062447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
96078	chrX	+	4342	9	Antisense	novelGene_ENSMUSG00000040363.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	66	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGAATGGATTGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	11913328	11994631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_11913355_11913663_11913987_11914540_11914887_11915233_11915494_11921209_11921395_11922582_11925428_11926366_11926447_11927759_11927888_11994482
96079	chr4	-	2582	5	Fusion	ENSMUSG00000078495.11_ENSMUSG00000062518.8	novel	2405	4	NA	NA	9	-46	multi-exon	TRUE	non_canonical	0	0	junction_1	111.895040104555	2	75	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	8382	False	NA	NA	False	NA	NA	NA	147860281	147758004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147758260_147838763_147840693_147842158_147842286_147845677_147845801_147860133
96080	chrX	+	4690	2	Antisense	novelGene_ENSMUSG00000050332.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGGCAGGCATACAGTCC	NA	False	NA	NA	False	NA	NA	NA	94467731	94488480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_94472205_94488263
96081	chr13	+	3771	2	Intergenic	novelGene_1430	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	32	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCTTTGGCTCCATGGG	NA	False	NA	NA	False	NA	NA	NA	66145010	66149024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66148097_66148339
96082	chr7	-	914	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	53	1	8	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	45109255	45107368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
96083	chr4	-	3080	2	Intergenic	novelGene_2136	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATTGAGAATGCTGGAAT	NA	False	NA	NA	False	NA	NA	NA	147450182	147314749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147314912_147447264
96084	chr2	+	3607	3	NIC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-70	2337	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	148.5	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATTATGGCCTGGTGA	NA	False	NA	NA	False	NA	NA	NA	176766042	176781477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_176766152_176776035_176776163_176778106
96085	chr5	-	1680	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1275	11	342	-11	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	1	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACACAAACAGCTTGTGGC	4003	False	NA	NA	False	NA	NA	NA	142891234	142888880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
96086	chr7	-	2289	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	44	0	44	0	multi-exon	FALSE	canonical	3	356	junction_2	34	3	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3905	False	NA	NA	False	NA	NA	NA	45175648	45172340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45172747_45173162_45174816_45175418
96087	chrX	-	903	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	71	1	13	-1	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	37	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTTTGCTGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	101232929	101228547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
96088	chrUn_MU069435v1	-	485	1	Intergenic	novelGene_4727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	485	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_500
96089	chr11	+	6983	38	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	-38719	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.9821297502963	1306	31	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTTATTCATTGTGTGG	3121	False	NA	NA	False	NA	NA	NA	78097852	78146310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_78098543_78098929_78099062_78099675_78099847_78099929_78100008_78100251_78100366_78102624_78102748_78102908_78103022_78103493_78103734_78104092_78104287_78107028_78107170_78108664_78108812_78109994_78110141_78110707_78110904_78112933_78113103_78113172_78113311_78113594_78113731_78113978_78114056_78115190_78115317_78115428_78115561_78116131_78116326_78116486_78116644_78116771_78116926_78117007_78117140_78117504_78117597_78117713_78117865_78119453_78119598_78119779_78119868_78120220_78120337_78120988_78121096_78121755_78122030_78122598_78122688_78122846_78123040_78123330_78123408_78123500_78123660_78124370_78124510_78136373_78136997_78141841_78142039_78145676
96090	chr1	-	2841	7	NIC	ENSMUSG00000042414.8	novel	2564	8	NA	NA	-158	21	intron_retention	FALSE	canonical	3	189	junction_6	89.7323179734531	1	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTTAAAGCTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	13197545	13183659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194897_13195389_13196081_13197333
96092	chr9	+	711	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	73	225	3	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400582	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
96093	chr3	-	5968	11	Genic_Genomic	ENSMUSG00000105350.2	novel	1683	1	NA	NA	-68100	-1023	multi-exon	FALSE	non_canonical	0	0	junction_1	0	137	43	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGGTCCGGGAGCGGGG	NA	False	NA	NA	False	NA	NA	NA	90269390	90200630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_90200730_90248960_90249300_90255871_90256002_90256659_90256792_90257691_90257824_90258708_90258882_90259120_90259435_90261612_90261816_90262979_90263089_90263433_90263554_90265173
96095	chr14	+	2701	19	Antisense	novelGene_ENSMUSG00000037544.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTTCACGGAACTGAAAT	3813	False	NA	NA	False	NA	NA	NA	47625237	47655642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_47625581_47626868_47626916_47627899_47628119_47629177_47629235_47631591_47631778_47633253_47633432_47635873_47635971_47636979_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645365_47647760_47647829_47648895_47649025_47649115_47649203_47650436_47650497_47651101_47651296_47653791_47654028_47655564
96096	chr17	+	2559	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	-18596	170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	115.066285244636	2	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATCTCTGAGTATGCTGC	NA	False	NA	NA	False	NA	NA	NA	17323080	17367263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17323161_17362997_17363125_17363366_17363428_17364720_17366138_17366389
96097	chr4	+	2585	9	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	4	0	multi-exon	FALSE	non_canonical	0	0	junction_1	18.952242611364	16	25	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	930	False	NA	NA	False	NA	NA	NA	145237364	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145239546_145239640_145241457_145241589_145314001_145314095_145321970_145321977_145343687_145343746_145347127_145347255_145348721_145348860_145350107
96098	chr16	-	564	1	Intergenic	novelGene_3772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	454	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96099	chr15	-	1955	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-106	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1556.05845541441	58	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	652	False	NA	NA	False	NA	NA	NA	36793869	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771685_36772573_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
96100	chr4	+	2960	7	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-10	824	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16.7597401199687	40	75	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTTGCAAACCTGTATC	NA	False	NA	NA	False	NA	NA	NA	147056422	147076036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056568_147058404_147058509_147065612_147065693_147067150_147067255_147071090_147071218_147073383_147074794_147075046
96101	chr3	+	5255	11	NNC	ENSMUSG00000042390.10	novel	2418	11	NA	NA	346	2455	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8.78692210048547	3	75	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGTGTCCTTCCAAGAC	NA	False	NA	NA	False	NA	NA	NA	90201013	90268135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90201651_90248962_90249302_90255873_90256004_90256661_90256794_90257693_90257826_90258710_90258882_90259120_90259437_90261614_90261824_90262981_90263093_90263437_90263556_90265175
96102	chr9	-	4329	27	NNC	ENSMUSG00000035047.10	novel	2598	19	NA	NA	-1	8167	intron_retention	FALSE	non_canonical	0	0	junction_1	64.2868134122249	424	34	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTTGGCTAGCGAGCAAG	NA	False	NA	NA	False	NA	NA	NA	21199253	21176585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21177013_21178033_21178118_21178201_21178375_21179544_21179819_21179895_21179963_21182012_21182145_21183761_21183842_21183928_21184007_21184084_21184206_21184548_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
96104	chr2	+	3272	5	NNC	ENSMUSG00000079009.9	novel	1728	4	NA	NA	4	3511	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.0746772020624	213	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	150023678	150038710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150023791_150032312_150032440_150032638_150032700_150033775_150035112_150037074
96105	chr10	-	3765	16	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	-6446	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	51.6795252816174	1997	71	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGTGTTTTCATTCTCA	NA	False	NA	NA	False	NA	NA	NA	105683687	105599107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105617862_105618159_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936_105677516_105678401_105678707_105681207_105681311_105682877
96106	chr7	-	1039	7	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	9	-2020	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_4	15.6569118567133	12	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAATATACATGCTTTC	NA	False	NA	NA	False	NA	NA	NA	107357230	107351191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356391_107356519_107356818_107356912_107357164
96107	chr5	-	1623	1	FSM	ENSMUSG00000029655.18	ENSMUST00000201384.2	7526	1	7162	-1259	6420	1259	mono-exon	FALSE	NA	NA	NA	NA	NA	41	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTAATGTTGTTTTATGG	1858	False	NA	NA	False	NA	NA	NA	150564564	150562941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_150562900_150564600
96108	chr5	+	12500	71	NNC	ENSMUSG00000045482.17	novel	12344	70	NA	NA	86	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_28	31.763848016516	232	106	14	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGCCCTATTTTTG	NA	False	NA	NA	False	NA	NA	NA	144704987	144796588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_144705056_144707898_144708060_144708417_144708468_144713912_144714024_144714690_144714796_144716793_144716878_144718785_144718843_144719005_144719132_144720797_144720876_144721067_144721157_144722278_144722376_144723441_144723581_144724469_144724549_144726167_144726403_144727630_144727998_144728080_144728179_144728902_144729098_144729822_144730015_144730719_144730886_144731410_144731668_144733770_144733972_144735057_144735210_144737603_144737804_144739677_144739896_144739972_144740171_144740848_144741110_144741509_144741672_144741793_144741895_144742497_144742620_144742863_144743035_144744132_144744202_144748704_144748825_144750243_144750364_144751218_144751384_144751480_144751663_144752160_144752360_144752741_144752871_144753121_144753389_144754406_144754614_144754744_144754904_144755001_144755131_144756511_144756623_144757057_144757205_144758582_144758797_144759500_144759627_144761266_144761414_144762028_144762232_144762683_144762806_144763329_144763544_144765276_144765457_144767715_144767863_144769257_144769378_144769715_144770004_144770106_144770245_144770966_144771080_144772797_144772934_144773941_144774134_144776210_144776407_144777147_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
96109	chr11	-	2656	18	NNC	ENSMUSG00000018433.15	novel	3098	18	NA	NA	50	-283	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	147.163280548745	160	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTTGAAAAAATGAAG	1180	False	NA	NA	False	NA	NA	NA	107080128	107057771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069853_107070881_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
96110	chr13	-	4079	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	30	8	-14	0	multi-exon	FALSE	canonical	3	34	junction_14	35.3204716033877	89	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACAACTCTTGTCAGTA	NA	False	NA	NA	False	NA	NA	NA	9815320	9734876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
96111	chr11	-	2038	14	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	935.724002195104	1	105	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5210	False	NA	NA	False	NA	NA	NA	88846282	88814845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88814890_88814944_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837965_88838061_88843231_88843381_88846119
96112	chr18	-	4424	20	NIC	ENSMUSG00000048799.9	novel	4554	21	NA	NA	-7	-7	combination_of_known_splicesites	FALSE	canonical	1	16	junction_1	69.1451963027451	195	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGAGTTGTGTGGTCGG	NA	False	NA	NA	False	NA	NA	NA	53877642	53814801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_53816537_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
96113	chr17	+	3841	7	NNC	ENSMUSG00000061544.14	novel	4525	6	NA	NA	-93	-963	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	87.1749518051041	12	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAGCCTGGTCTACAGAG	NA	False	NA	NA	False	NA	NA	NA	21949682	21966986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_21950033_21952775_21952940_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
96115	chrX	+	4040	21	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-16720	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	35.413662617696	358	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	NA	False	NA	NA	NA	149354504	149426874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_149355682_149367463_149367531_149368196_149368344_149368860_149369045_149370041_149370122_149370917_149371339_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
96116	chr18	+	1981	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26779	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	465.512023246427	5	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTGCTAAAACCTCTACAA	6306	False	NA	NA	False	NA	NA	NA	77126124	77234609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207791_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
96119	chr15	-	3816	15	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	55	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	727.817368883829	1	177	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGATGTGGCTATGAT	NA	False	NA	NA	False	NA	NA	NA	96953782	96892710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896414_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96908109_96908247_96910780_96910874_96911323_96911393_96914008_96914125_96914641_96914733_96917617_96917743_96953735
96120	chr2	-	3688	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110908.9	3697	13	-6	15	-6	-15	multi-exon	FALSE	canonical	0	0	junction_3	17.8535710713571	83	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGATTTTTTGTTAGGCTT	NA	False	NA	NA	False	NA	NA	NA	115896326	115693559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
96121	chr17	+	2045	1	Intergenic	novelGene_208	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGTGGGAGGAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
96122	chr9	+	3843	16	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	1676	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	114.881078608369	1	124	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAATAAGTAACATAAGT	6679	False	NA	NA	False	NA	NA	NA	57004207	57035639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014636_57014877_57015991_57016176_57017864_57018437_57020829_57021000_57024665_57024840_57025353_57025447_57026376_57026472_57032452_57032661_57034431
96123	chr5	-	2919	20	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	0	228	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	191.89313450265	3	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGCACTTGTGAGTGGG	NA	False	NA	NA	False	NA	NA	NA	31337253	31314559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331262_31331719_31331840_31337227
96124	chr13	+	6161	3	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6525	-335	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTAGAGGGAGGCCGG	NA	False	NA	NA	False	NA	NA	NA	98446404	98453477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_98449800_98450144_98452807_98453373
96125	chr9	+	2378	19	NIC	ENSMUSG00000031928.16	novel	3286	20	NA	NA	-8	-682	combination_of_known_junctions	FALSE	canonical	2	6	junction_7	84.913336357477	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCGTTGTTCATTTCT	NA	False	NA	NA	False	NA	NA	NA	14695989	14745260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
96126	chr11	+	2573	4	Antisense	novelGene_ENSMUSG00000011254.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAACACGTTTTTCT	9604	False	NA	NA	False	NA	NA	NA	45838711	45845407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_45839148_45841017_45842461_45843563_45843735_45844884
96127	chr3	-	1982	12	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	2	-8	intron_retention	FALSE	non_canonical	0	0	junction_2	216.754192958958	16	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGCAGGAACCCAGTGTGT	NA	False	NA	NA	False	NA	NA	NA	88821236	88816958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88817218_88817436_88817547_88817622_88817726_88817932_88818322_88818593_88818747_88818843_88818979_88819070_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
96128	chr3	-	6080	10	NIC	ENSMUSG00000038256.16	novel	6102	10	NA	NA	25	-11	combination_of_known_junctions	FALSE	canonical	2	6	junction_9	11.4309521329882	176	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTACAAAACAGAACTGCC	3701	False	NA	NA	False	NA	NA	NA	97205208	97110988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_97113294_97114462_97114724_97115793_97118033_97120187_97120288_97121000_97121191_97122427_97122745_97123628_97123942_97129094_97129178_97131157_97131294_97205072
96129	chr2	-	3651	13	FSM	ENSMUSG00000027210.21	ENSMUST00000110908.9	3697	13	36	10	36	-10	multi-exon	FALSE	canonical	0	0	junction_3	17.8535710713571	7	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGTTAGGCTTTGGTG	NA	False	NA	NA	False	NA	NA	NA	115896284	115693554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_115694995_115697290_115697386_115697749_115697840_115699225_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115893668_115893902_115895282
96131	chr14	-	1110	1	Antisense	novelGene_ENSMUSG00000045799.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCGGAGTCCGCGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	13670473	13669363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_13669400_13670500
96132	chr3	-	1524	12	NIC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	1	-194	intron_retention	FALSE	canonical	1	16	junction_1	209.062764904278	7	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCTCAGCAGACTTG	NA	False	NA	NA	False	NA	NA	NA	88821209	88817144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_88817218_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820235_88820873_88821010_88821099
96133	chr11	-	3633	14	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-6012	245	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	17.8049923189899	5	38	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTTTCTTGTTTTTCTT	9089	False	NA	NA	False	NA	NA	NA	106964043	106937246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956916_106957952_106958082_106959100_106959226_106963508
96134	chr16	-	2072	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	117	1214	12	685	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	3	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTCAAATATATTGGCCAA	NA	False	NA	NA	False	NA	NA	NA	22084638	22064512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
96135	chr1	-	4120	16	NNC	ENSMUSG00000026491.14	novel	8506	36	NA	NA	-6897	1333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	89.8030932404645	1	121	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCCTTTATTTCCTCC	NA	False	NA	NA	False	NA	NA	NA	179605380	179579930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_179581638_179583013_179583220_179585499_179585593_179587826_179587927_179590109_179590528_179591034_179591239_179593438_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264
96136	chr7	-	796	7	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5693.09817283661	16	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129237_99130903_99130999_99131467_99131562_99131776_99131908_99132798
96137	chr6	+	4023	18	Antisense	novelGene_ENSMUSG00000065728.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	66	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAACCAGCTCATGGCC	NA	False	NA	NA	False	NA	NA	NA	97131510	97155968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_97132004_97132045_97132458_97133803_97133931_97135006_97135159_97135420_97135521_97137200_97137297_97137491_97137560_97138326_97138520_97140477_97140637_97141009_97141100_97144207_97144367_97145048_97145214_97145706_97145851_97147285_97147392_97149172_97149301_97150260_97150363_97152726_97153929_97155841
96138	chrM	+	958	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	2	-3	2	3	mono-exon	FALSE	NA	NA	NA	NA	NA	82	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	0	True	NA	111	True	NA	NA	NA	2752	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
96139	chr17	+	4653	20	NNC	ENSMUSG00000024073.17	novel	15768	73	NA	NA	-2689	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	11.7690142021691	156	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTAGTATGTCTTGTT	6585	False	NA	NA	False	NA	NA	NA	74956937	75010340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_74957399_74958902_74959047_74959611_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996358_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
96140	chr3	+	3292	10	NNC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	7736	0	intron_retention	FALSE	canonical	1	1	junction_1	59.6547681080456	81	82	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAAGTGTTCGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88805477	88817406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88805672_88806201_88806382_88807236_88807435_88808884_88809029_88810063_88810208_88810288_88810409_88812758_88812870_88814678_88815915_88815993_88816097_88816544
96141	chr4	+	3903	9	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-13	-1	multi-exon	FALSE	non_canonical	0	0	junction_7	170.620741705105	2	59	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311759	145431010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145422723_145422806_145425813_145425941_145427474_145428621_145428705_145429340_145429675
96142	chr17	-	2981	8	FSM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	18	-439	18	439	multi-exon	FALSE	canonical	3	30	junction_6	27.8948462799061	126	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGCTTGAGACTAGCTTA	NA	False	NA	NA	False	NA	NA	NA	95057429	95034073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056813
96143	chr12	+	3183	5	ISM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	-420	8645	-9	-111	5prime_fragment	FALSE	canonical	3	40	junction_4	60.7345659406569	5	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTTTAGTGTTCACATG	NA	False	NA	NA	False	NA	NA	NA	3285494	3291299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833
96144	chr4	+	2397	3	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-166	775	multi-exon	FALSE	canonical	2	12	junction_1	35	28	11	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	145136648	145178233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136755_145138756_145138851_145176036
96145	chr4	+	7565	46	NIC	ENSMUSG00000066036.15	novel	15798	106	NA	NA	8529	-24	intron_retention	FALSE	canonical	0	0	junction_10	83.1495276632242	1	76	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAATGACTTAGTACACA	NA	False	NA	NA	False	NA	NA	NA	139170849	139216817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_139170885_139171905_139172003_139172554_139172663_139173169_139173287_139174169_139174380_139176132_139176283_139177625_139177854_139178556_139178636_139179038_139179285_139179881_139180051_139180445_139180591_139181282_139181369_139182477_139182566_139182758_139182953_139184842_139185083_139185405_139185545_139186109_139186236_139186336_139186466_139187309_139187654_139189138_139189230_139189488_139189574_139189712_139189841_139190590_139190721_139190808_139190967_139191295_139191406_139191852_139191995_139192269_139192352_139192604_139192779_139194523_139194646_139195316_139195515_139196100_139196182_139196986_139197075_139197509_139197638_139198615_139198724_139199042_139199163_139199782_139199974_139200381_139200556_139200847_139200948_139203441_139203661_139204438_139204553_139206228_139206372_139206760_139206887_139207952_139208148_139209768_139209994_139212595_139213459_139216477
96146	chr6	-	1413	8	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	49	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGGCGCCAAGCACACATC	6391	False	NA	NA	False	NA	NA	NA	67261020	67243962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67244391_67248178_67248330_67248867_67249012_67249122_67249213_67249802_67249921_67254742_67254918_67258629_67258798_67260881
96147	chr8	+	6099	8	NIC	ENSMUSG00000031976.15	novel	6073	10	NA	NA	-5	-5707	combination_of_known_junctions	FALSE	canonical	3	104	junction_1	32.4332910347831	4	71	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGATGCATCTAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	124748241	124769536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_124748547_124750198_124750338_124751794_124751972_124754597_124757929_124761766_124761928_124763374_124763486_124764899_124765143_124767904
96148	chr17	+	1167	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-3	685	-3	-685	mono-exon	FALSE	NA	NA	NA	NA	NA	12	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCCGGGGGGAGTATGGT	NA	False	NA	-28	True	NA	NA	NA	40157240	40158407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40158400
96149	chr13	-	3132	3	NNC	ENSMUSG00000113559.2	novel	1588	5	NA	NA	220	173974	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	84	1	73	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66126980	65950182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65953125_66126589_66126651_66126851
96150	chr13	-	2201	10	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	85	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2904.84749817513	7	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTTATGACGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	58544675	58539056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540281_58541098_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640
96151	chr9	+	2446	12	NNC	ENSMUSG00000032279.12	novel	2403	11	NA	NA	-17291	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	552.059824282457	1	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	6671	False	NA	NA	False	NA	NA	NA	54476326	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54476338_54493763_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
96152	chr19	+	3243	6	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	-11	2537	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	17.8594512793647	36	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTGTGCCCCTTTTATC	NA	False	NA	NA	False	NA	NA	NA	58500441	58544054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58539859_58539948_58541283
96153	chr5	+	380	1	Intergenic	novelGene_941	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3536	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTTCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197789	146198169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
96154	chr13	-	3968	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	141	8	-13	0	multi-exon	FALSE	canonical	3	34	junction_14	35.3204716033877	5	92	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACAACTCTTGTCAGTA	NA	False	NA	NA	False	NA	NA	NA	9815209	9734876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
96155	chr4	+	2496	7	NIC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	354	746	intron_retention	FALSE	canonical	3	513	junction_1	29.9763795901595	2	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTGTGTGAGGAGCTT	5402	False	NA	NA	False	NA	NA	NA	89055712	89098457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89090622_89095039_89095163_89097704
96156	chrX	+	3341	4	Antisense	novelGene_ENSMUSG00000040363.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	181	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGACTGCAGCCGCTCTGC	NA	False	NA	NA	False	NA	NA	NA	11921325	11946291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_11921395_11922554_11925434_11927708_11927888_11946077
96157	chr2	+	3687	23	Antisense	novelGene_ENSMUSG00000081236.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	20	22	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAGAGTGCTCTTTAACT	NA	False	NA	NA	False	NA	NA	NA	59750714	59881002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_59750882_59752485_59752562_59753884_59754101_59755003_59755260_59756363_59756504_59762447_59762517_59764016_59764059_59765557_59765627_59767031_59767098_59773107_59773170_59773283_59773375_59778430_59778647_59787977_59788083_59788775_59788833_59792360_59792978_59798973_59799365_59799559_59799763_59807702_59807894_59808883_59809050_59814123_59814318_59831852_59831903_59836387_59836534_59880905
96158	chr13	-	1064	1	Intergenic	novelGene_1525	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACAAATGGCAGCTGTA	NA	False	NA	NA	False	NA	NA	NA	100914646	100913582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_100913600_100914600
96159	chr5	+	619	5	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	372	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	7976.57474656259	12	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	25	True	NA	NA	NA	121343843	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343901_121344729_121344874_121345211_121345259_121346453_121346639_121346844
96160	chr7	-	6777	8	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-31	334	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	61.2662306691718	4	64	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCATATATTGAAAAGATT	NA	False	NA	NA	False	NA	NA	NA	27713571	27683944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_27689948_27704643_27704743_27704891_27705052_27706738_27706866_27707808_27707862_27711760_27711922_27713202_27713251_27713445
96161	chr6	-	8786	31	ISM	ENSMUSG00000030084.12	ENSMUST00000163139.8	9034	32	4937	-1	34	1	3prime_fragment	FALSE	canonical	3	115	junction_30	20.5882652660846	230	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGTGGCTCTGAGTCTTA	NA	False	NA	NA	False	NA	NA	NA	89334665	89293294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_89296454_89297593_89297745_89297838_89298052_89299424_89299595_89299712_89299904_89300217_89300315_89300555_89300660_89301235_89301396_89301521_89301669_89306365_89306433_89306539_89306797_89307317_89307461_89308196_89308432_89308822_89308967_89309067_89309308_89309662_89309757_89309987_89310156_89311257_89311395_89311632_89311754_89311835_89311988_89312109_89312304_89312378_89312476_89314132_89314334_89317504_89317620_89318830_89318931_89319310_89319465_89319566_89319691_89319932_89320034_89320950_89321092_89331837_89332021_89333439
96162	chr2	+	1839	8	Antisense	novelGene_ENSMUSG00000027379.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGCGCAGCCGCACTTGTG	NA	False	NA	NA	False	NA	NA	NA	127660435	127673768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_127661282_127663591_127663914_127665877_127665980_127667026_127667070_127669219_127669417_127671356_127671497_127671597_127671658_127673639
96163	chr5	-	2293	15	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	221.015709571856	3	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTAAGTTTGTGAGCC	1962	False	NA	NA	False	NA	NA	NA	138185478	138176890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181960_138182151_138182188_138182593_138182810_138185345
96164	chr13	+	2391	7	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	36	462	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	27.7213315376845	1	70	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61952115	62009951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62008386_62008470_62008663_62008746_62009044_62009209
96165	chr16	-	564	1	Intergenic	novelGene_3773	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96166	chrUn_JH584304v1	-	3550	6	Intergenic	novelGene_4605	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	149	junction_2	247.844628749545	65	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAACAATCTTCTGTCTT	NA	False	NA	NA	False	NA	NA	NA	59701	52192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55249_55511_55702_56985_57152_58563_58836_59591
96167	chr10	-	1962	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	-11	8	-11	-3	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	3	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCCCTTAATGTCTTAC	NA	False	NA	NA	False	NA	NA	NA	116899730	116886913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
96168	chr13	+	7125	48	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	1346	68210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	471.719417335894	41	124	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGGCCCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	6599616	6698761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685_6630159_6630209_6631628_6632437_6632544_6634638_6634739_6636517_6636628_6637086_6637150_6638524_6638690_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653500_6654991_6655117_6655670_6655765_6664739_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675249_6685959_6686037_6698608
96169	chr7	+	4604	5	NIC	ENSMUSG00000011427.17	novel	377	2	NA	NA	66	1192	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	17.5124955389002	33	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29518481	29531622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_29518624_29522404_29522570_29524254_29524379_29525116_29525213_29527545
96170	chr7	-	10177	13	Intergenic	novelGene_2877	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	241	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGAGCTCTTGCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	7813466	7783491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_7783581_7800077_7801031_7801961_7802601_7803195_7803670_7803716_7804029_7804176_7804382_7804450_7807186_7807780_7808249_7808296_7808662_7808736_7811771_7812365_7812834_7812881_7813172_7813321
96171	chr13	-	2753	7	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-65369	967	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	32.0438068205941	493	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66497334	66427982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66429686_66429768_66430404_66431569_66431631_66431830_66431958_66434553_66434665_66439173_66439270_66497314
96172	chr5	-	5901	1	ISM	ENSMUSG00000092060.5	ENSMUST00000169190.5	7935	5	29745	7	29276	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	182	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAAGTGTTTTGACTTGA	NA	False	NA	NA	False	NA	NA	NA	67555397	67549496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_67549500_67555400
96173	chr9	+	2919	15	NIC	ENSMUSG00000032059.14	novel	463	5	NA	NA	103	197	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.3522794004038	75	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATCCTCTAGATAGGCA	NA	False	NA	NA	False	NA	NA	NA	50686948	50755039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_50687284_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
96174	chr5	-	2803	3	NNC	ENSMUSG00000047215.15	novel	738	8	NA	NA	6	0	intron_retention	FALSE	canonical	0	0	junction_2	4282.5	3	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548735	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65545785_65545904_65547016_65547121
96175	chr10	-	2836	4	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	156	-37	intron_retention	FALSE	non_canonical	0	0	junction_1	366.325902260087	1	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAATTTTGTTTAGTTAA	NA	False	NA	NA	False	NA	NA	NA	5755444	5749196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5750643_5750702_5751243_5751868_5752533_5755258
96176	chr4	+	4478	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-1752	1455	multi-exon	TRUE	non_canonical	0	0	junction_2	5	1	109	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTTCCAGGTTCATGGA	2830	False	NA	NA	False	NA	NA	NA	147233198	147671110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147233279_147249797_147249867_147409276_147409462_147412854_147412961_147413363_147413373_147578366_147578502_147595162_147595337_147667290_147670022_147670121
96177	chr13	+	5383	33	NIC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	14	-7	intron_retention	FALSE	canonical	1	598	junction_16	243.941941655053	33	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTGTGTTGGAAGTAGT	NA	False	NA	NA	False	NA	NA	NA	49835619	49887736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
96178	chr5	+	3694	11	FSM	ENSMUSG00000029283.18	ENSMUST00000140378.8	3679	11	-15	0	-4	0	multi-exon	FALSE	canonical	3	199	junction_7	28.5629130167075	6	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	107112242	107132298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107123527_107124495_107124579_107127160_107127311_107130829
96179	chr13	+	2467	17	NNC	ENSMUSG00000021595.19	novel	4164	18	NA	NA	397	1	at_least_one_novel_splicesite	FALSE	canonical	1	13	junction_3	490.491012755331	6	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGCATGAGACTTGGAT	NA	False	NA	NA	False	NA	NA	NA	69761118	69782454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_69761162_69763530_69763637_69765524_69765622_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
96182	chr13	-	2032	6	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-7443	150	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	95.2730811929582	1	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGAGAGAAACCTTATG	NA	False	NA	NA	False	NA	NA	NA	66828836	66817841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66819455_66821007_66821069_66821267_66821395_66823859_66823947_66824028_66824106_66828769
96183	chr6	+	7120	18	NNC	ENSMUSG00000057230.15	novel	19341	21	NA	NA	29	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	10.0528017750979	107	53	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAGAGACTTAGTTGT	NA	False	NA	NA	False	NA	NA	NA	86826542	86980198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86826634_86826813_86827198_86901995_86902115_86912411_86912521_86913923_86914067_86921338_86921461_86923085_86923168_86923842_86923976_86926523_86926628_86927762_86927843_86932085_86932241_86933240_86933555_86936013_86936257_86940977_86941208_86942458_86942617_86944250_86944356_86972821_86976290_86979118
96184	chr17	-	1570	12	Fusion	ENSMUSG00000023832.15_ENSMUSG00000062480.13	novel	2144	10	NA	NA	-3160	7352	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGATGCCGCGGGGCCTG	NA	False	NA	NA	False	NA	NA	NA	13162647	13135347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139707_13141561_13141620_13142104_13142297_13142415_13142580_13143145_13143344_13162544
96186	chr9	+	3617	30	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	-19	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.947650556986	22	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTTTAAAATAACCAAAGAG	NA	False	NA	NA	False	NA	NA	NA	72569744	72655431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642337_72642398_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
96187	chr13	+	2543	10	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-24	-39	intron_retention	FALSE	canonical	1	7	junction_8	195.187089737001	15	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATGCCAGTAACATTAAAG	NA	False	NA	NA	False	NA	NA	NA	107083610	107096693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107093601_107093709_107095162
96188	chr8	+	1222	3	Intergenic	novelGene_1714	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1	7	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGTCTACTTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	97845768	97865281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_97845943_97848885_97849496_97864843
96189	chr17	-	2468	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-3	intron_retention	FALSE	non_canonical	0	0	junction_9	3302.97381158253	8	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884199	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882534_45882729_45882838_45884092
96190	chrX	-	2777	14	NNC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	-3929	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	682.837276049082	1	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72834432	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72824637_72824757_72824819_72825282_72825308_72826011_72826323_72830380_72830538_72830805_72830911_72832438_72832555_72833400_72833478_72833633_72833725_72833962_72834029_72834257
96191	chr6	+	2491	15	ISM	ENSMUSG00000034269.13	ENSMUST00000042889.12	6755	22	233	31711	-4	3793	5prime_fragment	FALSE	canonical	3	23	junction_2	20.0021682498143	10	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATTCGCTTTGGCTCA	8076	False	NA	NA	False	NA	NA	NA	113054558	113098685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_113054674_113081895_113082083_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528
96194	chr1	-	2639	19	NIC	ENSMUSG00000102976.7	novel	4396	18	NA	NA	4	-1859	combination_of_known_splicesites	FALSE	canonical	2	3	junction_18	137.615809815265	7	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCGCGCCGGCTGAGCT	NA	False	NA	NA	False	NA	NA	NA	133589112	133549458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588313_133588360_133588974
96195	chrM	+	1243	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	373	-71	373	71	mono-exon	FALSE	NA	NA	NA	NA	NA	2	74	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	294	False	NA	11	True	NA	NA	NA	5700	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5700_6900
96196	chr7	-	1499	8	NIC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-8	0	intron_retention	FALSE	canonical	3	19253	junction_4	590.139658323799	18	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398321	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396949_126398216
96197	chr5	-	3926	4	NNC	ENSMUSG00000025337.11	novel	1548	5	NA	NA	-2	-6	intron_retention	FALSE	non_canonical	0	0	junction_3	410.221891175983	30	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAAGCTCTGGCTTGCATT	NA	False	NA	NA	False	NA	NA	NA	130284373	130274577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_130277292_130279654_130279856_130282779_130283061_130283643
96198	chr18	+	4588	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	27	324	intron_retention	FALSE	non_canonical	0	0	junction_14	162.05014018471	7	47	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGGTAGTCTGTAACTTA	9019	False	NA	NA	False	NA	NA	NA	32970332	33000971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985644_32985992_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
96199	chr2	+	6829	20	ISM	ENSMUSG00000039262.17	ENSMUST00000132459.8	4837	29	20946	-3338	-2211	-22	3prime_fragment	FALSE	canonical	3	120	junction_8	112.55149637024	780	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGTATAAAAAAATAAAG	8686	False	NA	NA	False	NA	NA	NA	32094183	32124512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109225_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32119274_32119357_32120622
96200	chr5	+	387	1	Intergenic	novelGene_937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2251	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
96201	chr12	-	7509	27	Intergenic	novelGene_4291	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	162	32	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAGACAATAAAAATGTA	NA	False	NA	NA	False	NA	NA	NA	5097394	4987385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_4987537_4989653_4989706_4990091_4990243_4991968_4992075_4993154_4993266_4994905_4995020_5000515_5000593_5002605_5002704_5004542_5004658_5007499_5007614_5008054_5008230_5011215_5011305_5015838_5016000_5019350_5019442_5023966_5024278_5028450_5028589_5040871_5041057_5056603_5056790_5060250_5060388_5063801_5064002_5067984_5068141_5074579_5074703_5077040_5077187_5081500_5082175_5084030_5084158_5084464_5084595_5094003
96202	chrX	-	7765	19	NNC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	-3	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	95.1317637234578	393	32	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACCAAAATGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	104972912	104841231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864407_104918386_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104954179_104954250_104955075_104955261_104972564
96203	chr4	+	2894	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-7	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	204.063715540024	17	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTGCTTTGATTGT	905	False	NA	NA	False	NA	NA	NA	145237339	145265751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160_145264369_145264452
96204	chr4	-	1634	6	Antisense	novelGene_ENSMUSG00000032643.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	31	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGGCGAGTGGGCGC	NA	False	NA	NA	False	NA	NA	NA	124602376	124594513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_124594643_124599403_124599582_124599675_124599849_124601044_124601215_124601307_124601521_124601605
96205	chr16	-	2232	6	NNC	ENSMUSG00000071533.12	novel	2200	5	NA	NA	-2	-126	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	1006.61305375998	14	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAACACCTCTCCTACA	NA	False	NA	NA	False	NA	NA	NA	55850041	55835994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55844824_55845001_55849965
96206	chr5	+	3406	10	NNC	ENSMUSG00000107385.4	novel	1714	7	NA	NA	8	13949	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5.96284793999944	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGATGGGTATGTGTGA	8040	False	NA	NA	False	NA	NA	NA	67621253	67648924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991_67626159_67630824_67631405_67634249_67634626_67635222_67635369_67646778_67646895_67647470
96207	chr11	-	741	3	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	195	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCCTTTAAAGC	4388	False	NA	NA	False	NA	NA	NA	20286086	20284816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285207_20285573_20285729_20285890
96208	chr12	+	2250	3	Antisense	novelGene_ENSMUSG00000113160.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	116	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAATACATTGGGGTCTTG	NA	False	NA	NA	False	NA	NA	NA	23752935	23916750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_23754687_23881815_23881982_23916417
96211	chr4	+	4101	9	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36458	92522	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	34.0183773863481	1	62	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATAGTTGGTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	145136851	145269980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145174456_145174578_145176036_145176622_145178992_145180674_145268440_145268629_145268703_145268867_145268910
96212	chr2	-	4266	7	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	13	1271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.549955123698	71799	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATGCCAATGCA	NA	False	NA	NA	False	NA	NA	NA	121337133	121321120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121323360_121324011_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121336943
96213	chr1	-	7289	30	Antisense	novelGene_ENSMUSG00000101413.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	52	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACAGGCTCCCGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	136457305	136394129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_136394383_136395583_136396911_136399055_136399307_136401115_136401209_136404075_136404177_136406096_136406161_136407530_136407652_136410123_136410241_136410659_136410777_136414008_136414181_136414770_136414919_136415139_136415203_136417934_136418120_136422362_136422469_136423593_136423757_136424306_136424455_136425099_136425252_136427752_136427882_136430384_136430476_136431044_136431176_136437880_136437989_136441473_136441558_136443589_136443817_136443997_136444178_136447364_136447521_136448925_136449046_136453517_136453593_136454510_136454644_136454981_136456694_136456743
96214	chr6	-	2011	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	65	9	-65	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	10	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGGGTTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
96215	chr5	+	4085	24	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	100	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTCTCCCCGGATCCGCC	NA	False	NA	NA	False	NA	NA	NA	100511686	100564005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100511807_100513589_100513854_100516152_100516210_100521236_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533986_100534067_100536404_100536966_100538617_100538687_100540247_100540497_100540728_100540875_100541061_100541221_100543657_100543751_100547194_100547349_100550073_100550215_100551873_100551968_100553300_100553504_100555024_100555133_100555887_100555975_100563770
96216	chr19	+	8025	36	ISM	ENSMUSG00000040565.9	ENSMUST00000099494.4	7204	38	23026	-1305	-11080	1305	3prime_fragment	TRUE	canonical	3	111	junction_7	14.6020406737118	124	30	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTGAGAATGTTTGTTT	380	False	NA	NA	False	NA	NA	NA	36926504	36991457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_36926583_36928433_36928578_36933770_36933935_36935772_36935910_36939038_36939169_36939830_36939900_36943017_36943108_36943891_36943988_36944075_36944253_36946455_36946597_36947313_36947439_36950297_36950419_36955714_36955820_36957976_36958127_36958386_36958530_36959046_36959222_36960848_36961053_36963854_36964282_36965380_36965572_36966275_36966430_36966787_36966898_36968122_36968325_36969835_36969985_36971669_36971823_36971990_36972113_36972198_36972367_36973929_36974008_36974905_36975036_36977491_36977634_36977716_36977848_36979813_36979940_36980887_36981041_36981831_36982044_36986979_36987140_36987411_36987583_36988660
96217	chr12	+	2048	5	NNC	ENSMUSG00000114025.2	novel	1214	3	NA	NA	-11401	-524	intron_retention	FALSE	canonical	0	0	junction_1	66.469447868927	1	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTGAAATTAAAAAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	17940988	17954152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_17941013_17941892_17941966_17950660_17950788_17950987_17951049_17952389
96219	chr13	-	9406	8	Antisense	novelGene_ENSMUSG00000114016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	125	116	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCTTGCCTGTCGGTCTA	NA	False	NA	NA	False	NA	NA	NA	65452013	65426665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65426933_65427074_65427155_65428075_65428201_65432732_65432829_65439634_65440119_65442208_65442297_65443411_65443540_65443875
96220	chr14	+	1427	1	Intergenic	novelGene_642	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTAAATGAATAAATGAATA	5805	False	NA	NA	False	NA	NA	NA	118943763	118945190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_118943800_118945200
96221	chr4	-	5593	4	Fusion	ENSMUSG00000066000.13_ENSMUSG00000062518.8	novel	2594	5	NA	NA	-37	0	intron_retention	FALSE	canonical	2	15	junction_3	181.477883562219	28	83	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147787047	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147698506_147699736_147702956_147725368_147725463_147786879
96222	chr7	-	2377	2	NNC	ENSMUSG00000038539.16	novel	1816	3	NA	NA	-14148	-3312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	69	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCGCCTTTTCGCCGCC	5459	False	NA	NA	False	NA	NA	NA	44480230	44465850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44465907_44477909
96223	chr9	+	1043	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	796	-1	14	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	1436	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAGACTGTACCTGGATT	NA	False	NA	NA	False	NA	NA	NA	119956853	119960639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
96225	chr7	-	5548	1	Intergenic	novelGene_2937	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	73	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTGCCTTGGTCGTGGTG	NA	False	NA	81	True	NA	NA	NA	42466157	42460609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_42460600_42466200
96226	chr2	-	3180	7	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-132884	1588	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	58.7139960599969	7	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAAGATTCTGTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	176024502	175881795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175882171_175882386_175883392_175883475_175884942_175886096_175886158_175886363_175886491_175891615_175891671_176024411
96227	chr4	+	2523	19	NIC	ENSMUSG00000029056.14	novel	2706	20	NA	NA	0	-4	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	31.6079377434698	95	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTCATCTGGTGAGAAG	NA	False	NA	NA	False	NA	NA	NA	155048589	155065387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063411_155063483_155063948_155064050_155064182_155064252_155064951
96228	chr7	+	1211	11	NNC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	-5	-407	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_4	1110.36804709069	5	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTGCGTGTAGAATGTCT	NA	False	NA	NA	False	NA	NA	NA	137039337	137069916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060923_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
96229	chr3	-	4852	16	Antisense	novelGene_ENSMUSG00000104925.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	98	31	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAACAGATTTTCAATTG	NA	False	NA	NA	False	NA	NA	NA	103263678	103228921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_103228976_103231958_103232074_103233401_103233550_103234106_103234224_103236351_103236627_103237393_103237559_103238923_103239126_103244715_103244846_103246593_103246658_103248873_103249035_103251608_103251958_103253958_103254084_103255635_103255707_103259312_103259472_103260882_103260932_103261010
96230	chr2	+	3346	14	NNC	ENSMUSG00000017760.17	novel	3646	16	NA	NA	0	-54	intron_retention	FALSE	canonical	0	0	junction_2	278.228610612413	1	145	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTACTCTCTGTCAGATA	NA	False	NA	NA	False	NA	NA	NA	164675766	164682898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164676129_164676239_164676352_164676623_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
96231	chr15	-	6455	19	NIC	ENSMUSG00000033075.18	novel	3882	19	NA	NA	0	-23	combination_of_known_junctions	FALSE	canonical	3	74	junction_10	47.9875562573836	136	72	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTCTGTGCTTTGACTGG	6143	False	NA	NA	False	NA	NA	NA	97991450	97936647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
96232	chr2	+	4174	6	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	5	57458	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	97.9991836700694	139	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGCTGGTTAGATGGCTCA	NA	False	NA	NA	False	NA	NA	NA	177190012	177259014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177198701_177198829_177199035_177199097_177200246_177200570_177200654_177204192_177258986
96233	chr15	+	3946	1	Intergenic	novelGene_3248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATGAAAGACCCACAAC	NA	False	NA	NA	False	NA	NA	NA	22700974	22704920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22701000_22704900
96234	chr16	+	3311	1	Intergenic	novelGene_3673	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	102	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCATACCTAAACATGATAAA	NA	False	NA	NA	False	NA	NA	NA	57104528	57107839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57104500_57107800
96235	chrX	-	3265	14	NNC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	-3929	-5	intron_retention	FALSE	non_canonical	0	0	junction_8	696.581041896055	36	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAACTTGGCCCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	72834432	72822573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380_72830538_72830805_72830911_72832438_72832555_72833400_72833478_72833633_72833725_72833962_72834029_72834257
96236	chr6	+	303	2	NIC	ENSMUSG00000030319.9	novel	5474	15	NA	NA	30974	1554	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_1	0	63	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGAACCTTCTCCGCAC	7886	False	NA	NA	False	NA	NA	NA	115782472	115784072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_115782650_115783946
96237	chr5	+	1435	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	274	intron_retention	FALSE	canonical	0	0	junction_3	520.052795129708	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGGGTAAATAGTTAATTT	NA	False	NA	NA	False	NA	NA	NA	108208603	108252179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131
96238	chr14	+	7794	17	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_7	47.4657771452233	465	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCGTGTCCTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21531501	21722201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21675830_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
96239	chrX	+	5844	3	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	143	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCACCCAGCAGCAGTCT	NA	False	NA	NA	False	NA	NA	NA	49652007	49662161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49653699_49656425_49656571_49658153
96240	chr11	+	1977	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	245.023707595715	2	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	NA	False	NA	NA	NA	115455307	115474732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469049_115469376_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
96241	chr11	-	3150	3	Intergenic	novelGene_2297	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	4	81	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCAGCAAGACCCGTTTC	NA	False	NA	NA	False	NA	NA	NA	57450218	57433751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433966_57445856_57448725_57450150
96242	chr15	-	2419	16	NNC	ENSMUSG00000037487.8	novel	9242	59	NA	NA	3240	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	303.441079764901	1	85	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTAAGTATGTTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	37988641	37968132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_37968301_37968362_37968745_37970505_37970592_37971991_37972137_37973146_37973261_37973546_37973703_37975830_37975916_37976303_37976480_37978265_37978327_37980033_37980165_37981063_37981209_37981709_37981822_37984190_37984435_37986121_37986221_37986322_37986444_37988447
96243	chrX	-	2299	18	Antisense	novelGene_ENSMUSG00000000787.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCGCACCGCGCGGCCAC	NA	False	NA	NA	False	NA	NA	NA	13157995	13147260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13147395_13150414_13150475_13151153_13151200_13152270_13152404_13153459_13153623_13153702_13153803_13154023_13154158_13154515_13154602_13154809_13154911_13155018_13155180_13155633_13155782_13156076_13156218_13156414_13156600_13156684_13156802_13157138_13157292_13157399_13157540_13157649_13157788_13157836
96244	chr11	+	1863	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	178	443	45	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	19	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940696	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
96245	chr16	-	609	6	FSM	ENSMUSG00000022956.12	ENSMUST00000155452.8	560	6	-49	0	-44	0	multi-exon	FALSE	canonical	2	4	junction_3	2452.38509210931	15	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGCGTGAGGAGCCTT	903	False	NA	NA	False	NA	NA	NA	91728483	91722108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91725786_91725898_91727241_91727293_91728407
96246	chr4	+	2859	16	Antisense	novelGene_ENSMUSG00000089265.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	29	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACGGCCTGGGTCTGGT	3133	False	NA	NA	False	NA	NA	NA	41194335	41207024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41195247_41195333_41195528_41195609_41195672_41195744_41195852_41195941_41196042_41196325_41196532_41196727_41196808_41199216_41199266_41199493_41199585_41199714_41199903_41201465_41201534_41202273_41202460_41203533_41203573_41205523_41205740_41206154_41206330_41206837
96248	chrX	-	4487	1	Intergenic	novelGene_4041	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	78	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTTGCAATTTGCAACAA	NA	False	NA	NA	False	NA	NA	NA	122063345	122058858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_122058900_122063300
96249	chr4	+	2584	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	3328	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	121.77480051643	18	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTGTGTGGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	147576867	147601271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147592042_147592098_147595209_147595337_147596801_147597378_147597462_147597596_147597930_147598100_147599018_147599561_147600430
96250	chr13	+	3163	4	NNC	ENSMUSG00000074867.5	novel	449	4	NA	NA	13700	5327	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	13.1993265821489	1	101	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGAGTTCTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	62381069	62389285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62381198_62381382_62381444_62382774_62385626_62389162
96251	chr15	-	2294	5	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-633	intron_retention	FALSE	canonical	3	214	junction_2	11739.4715170658	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGCTTTGTGCATTATG	3572	False	NA	NA	False	NA	NA	NA	79967553	79962628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79963010_79963890_79965413_79965815_79965985_79966590_79966784_79967524
96252	chr11	-	4739	10	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-3216	-9	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_9	15.6686365979783	36	58	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCCGTCCATCTGTGT	NA	False	NA	NA	False	NA	NA	NA	106946932	106923917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697
96253	chr5	-	2909	20	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	0	1	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	61.2872533551857	149	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGATGTCTCCATAATGTC	NA	False	NA	NA	False	NA	NA	NA	114911495	114867634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881836_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
96254	chr17	-	2889	7	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-131	-3	intron_retention	FALSE	canonical	3	9221	junction_3	1134.1701322504	3	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45882639	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45879051_45879154_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943
96256	chr14	+	4583	18	Fusion	ENSMUSG00000040840.8_ENSMUSG00000091306.3_ENSMUSG00000040822.8	novel	811	3	NA	NA	1222	-152	intron_retention	FALSE	non_canonical	0	0	junction_1	0	114	18	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGGCGCTGGGGCACTT	NA	False	NA	NA	False	NA	NA	NA	54879630	54924402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_54880508_54881181_54881282_54881398_54881725_54881906_54882016_54882142_54882252_54882670_54882814_54883061_54883198_54883904_54884024_54884158_54884296_54885546_54885590_54889175_54889316_54899624_54899743_54901045_54901263_54901828_54903091_54904528_54904618_54916696_54916812_54922469_54922537_54923926
96257	chr8	-	559	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	-44	-59	-44	59	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCTAAAGAACATTGTAC	NA	False	NA	NA	False	NA	NA	NA	107989924	107989365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107989400_107989900
96258	chr4	+	3760	5	Fusion	ENSMUSG00000082248.2_ENSMUSG00000065999.14	novel	628	4	NA	NA	-82	1455	multi-exon	FALSE	non_canonical	0	0	junction_1	43.7342828911141	88	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTTCCAGGTTCATGGA	NA	False	NA	NA	False	NA	NA	NA	147527845	147671110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147527995_147578832_147578905_147665698_147665826_147667290_147667431_147667838
96260	chr8	-	2660	4	ISM	ENSMUSG00000031651.6	ENSMUST00000059692.4	1850	6	1031	232	1031	-6	3prime_fragment	FALSE	canonical	3	194	junction_3	20.4178571081514	2	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATCTTCCCTCTCCCC	NA	False	NA	NA	False	NA	NA	NA	43593492	43583075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603
96261	chr4	-	6259	26	NIC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	22	-17	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	7.95044652834041	78	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGCTATGCAACACTGTTC	-12	True	NA	NA	False	NA	NA	NA	57300353	57190857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300280
96262	chr5	+	3899	19	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	93	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGGTCGCGGTTTTATGA	NA	False	NA	NA	False	NA	NA	NA	31313452	31337275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31314749_31315689_31315839_31316404_31316534_31316777_31316874_31317046_31317212_31317298_31317434_31323226_31323358_31323702_31323733_31325041_31325146_31325326_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31330728_31330856_31331110_31331436_31331577_31331839_31337226
96263	chr4	-	4163	26	NNC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	28545	-2131	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_25	12.7030075179069	5	42	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTGGTATTTTTAAATA	7102	False	NA	NA	False	NA	NA	NA	57271830	57192971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57271739
96264	chr4	+	6234	24	NNC	ENSMUSG00000078772.3	novel	554	5	NA	NA	2905	36755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	122	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCAAACACAAACAGTTT	NA	False	NA	NA	False	NA	NA	NA	19608355	19687885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_19611814_19618284_19618357_19619154_19619255_19621929_19622025_19623093_19623223_19627632_19627774_19627871_19628005_19631044_19631206_19635253_19635343_19638604_19638677_19638771_19638851_19639951_19640081_19640194_19640280_19640360_19640415_19641732_19641909_19643365_19643460_19650113_19650441_19659562_19659746_19661963_19662033_19662121_19662260_19672418_19672544_19673155_19673295_19678344_19678436_19687790
96265	chr15	-	3878	16	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	4	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	547.745926502425	1	114	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCTATGATCTTCTTTC	NA	False	NA	NA	False	NA	NA	NA	96953833	96892702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907830_96907887_96907995_96908079_96908164_96908224_96910805_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
96266	chr4	+	1668	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	66	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	5215.34655631621	24	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150321765	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331229_150331907_150332110_150332287_150332397_150332517_150332577_150332942
96267	chr17	+	1080	2	Intergenic	novelGene_93	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095198	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
96268	chr5	+	1816	17	Antisense	novelGene_ENSMUSG00000025745.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	49	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTGCCGCCTTACTAAAA	NA	False	NA	NA	False	NA	NA	NA	30326492	30360033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_30326543_30327153_30327216_30327617_30327762_30328607_30328691_30331560_30331734_30333796_30333932_30334817_30334929_30337237_30337282_30339048_30339177_30339977_30340102_30345947_30346037_30347703_30347837_30349156_30349296_30350232_30350364_30352340_30352415_30352977_30353019_30359878
96269	chr14	+	5349	22	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	67	48142	intron_retention	FALSE	non_canonical	0	0	junction_9	267.249533068199	6	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAAGTCCCAGGGGCAGC	NA	False	NA	NA	False	NA	NA	NA	54598364	54655272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774_54607344_54607549_54607734_54610396_54610546_54611297_54611398_54611672_54611775_54612004_54612128_54615221_54615367_54616451_54616577_54645957_54646506_54650180_54650245_54651027_54651104_54651335_54651475_54654049_54654231_54654947
96270	chr9	+	4350	2	Fusion	ENSMUSG00000032399.9_ENSMUSG00000064514.3_ENSMUSG00000119765.1	novel	856	4	NA	NA	26	-147	intron_retention	FALSE	non_canonical	0	0	junction_1	0	35	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080700	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_64083078_64083828
96271	chr4	+	6595	9	Intergenic	novelGene_2005	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	144	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGCGAGCCCAGAGCCG	NA	False	NA	NA	False	NA	NA	NA	142854043	142939204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_142855544_142858278_142862667_142868690_142868804_142888624_142888753_142896605_142896757_142905855_142905959_142907443_142907562_142921230_142921304_142939183
96272	chr10	-	2605	5	NNC	ENSMUSG00000047090.14	novel	2335	5	NA	NA	-104	4	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	11.0113577727726	29	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGATCTGTAATAAGAGG	5633	False	NA	NA	False	NA	NA	NA	128640343	128635969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128639870
96274	chr14	-	1110	1	Antisense	novelGene_ENSMUSG00000045799.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGGAGGCGGTGGGCGG	NA	False	NA	NA	False	NA	NA	NA	13670459	13669349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_13669300_13670500
96275	chr12	+	2897	4	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-264	18962	multi-exon	FALSE	canonical	3	7	junction_1	14.522013940528	78	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGATCACATACAAGTGA	NA	False	NA	NA	False	NA	NA	NA	18437491	18457041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_18437882_18452998_18453126_18453327_18453389_18454722
96276	chr11	+	3422	3	FSM	ENSMUSG00000019437.18	ENSMUST00000108338.2	714	3	-45	-2663	-14	629	multi-exon	FALSE	canonical	3	157	junction_1	5	244	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGTGTTTCATAACAC	NA	False	NA	NA	False	NA	NA	NA	78069542	78073364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_78069883_78070195_78070279_78070365
96277	chr9	-	1559	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	104	269	21	-269	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	7	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTCCAACCTGGGCTATG	NA	False	NA	NA	False	NA	NA	NA	110775122	110768939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
96278	chr7	+	11828	34	NIC	ENSMUSG00000107023.3	novel	12746	31	NA	NA	-7562	-1783	intron_retention	FALSE	canonical	2	9	junction_1	24.7824695883617	394	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTCTAATTGCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	127111193	127164443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127111511_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309_127128397_127129354_127129532_127129611_127129971_127130065_127130244_127130506_127130644_127130891_127131062_127131198_127131392_127133719_127133857_127133946_127134134_127137172_127137343_127137674_127137941_127138120_127138409_127138928_127139094_127139827_127140095_127140413_127141880_127148311_127148578_127148704_127148908_127151430_127151601_127151739_127151937_127152033_127152149_127152346_127152467_127156579_127156781_127156937_127157022_127157139_127160958_127162293_127162465_127163955
96279	chr2	+	2237	11	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	3117	976	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1233.13367077539	5	51	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCGACTCTGCCCTCTGA	NA	False	NA	NA	False	NA	NA	NA	162904385	162925595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162904470_162906199_162906421_162910075_162910224_162914543_162914835_162916301_162916725_162917555_162917649_162919711_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
96280	chrX	+	3228	23	Antisense	novelGene_ENSMUSG00000031139.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAATGTCCGTGAAAGTCC	NA	False	NA	NA	False	NA	NA	NA	59101325	59181652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_59102051_59105206_59105314_59107439_59107582_59108452_59108520_59109959_59110035_59112513_59112608_59122540_59122762_59128217_59128344_59129759_59129852_59154800_59154849_59155116_59155231_59155926_59155995_59158738_59158817_59160460_59160510_59166300_59166471_59168474_59168667_59170067_59170260_59172374_59172495_59174655_59174770_59175401_59175538_59178967_59179120_59180740_59180860_59181625
96281	chr19	+	464	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	-56	-12	-56	12	mono-exon	FALSE	NA	NA	NA	NA	NA	152	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCTGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59310746	59311210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_59310700_59311200
96282	chr5	-	3054	6	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	70	-8	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	101.103115678994	8	22	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCTTTTATATGAGGAAT	NA	False	NA	NA	False	NA	NA	NA	105007866	104961042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_104963302_104964564_104964626_104964862_104964990_104965173_104965219_104985153_104985382_105007532
96283	chr4	+	5208	18	NNC	ENSMUSG00000028587.19	novel	670	3	NA	NA	2946	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	192.291301510698	29	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTGGTATGGTTTGGG	8218	False	NA	NA	False	NA	NA	NA	108439596	108472028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108440577_108440785_108442081_108445829_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
96284	chr11	+	4532	28	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-2	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	55.0468063708729	1	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771176	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
96285	chr13	-	3153	6	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	6083	-339	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	39.1458810093731	3	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65490328	65484374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65485831_65486082_65486324_65486491_65487225_65488362_65488424_65488791_65489393_65490267
96286	chr8	+	837	3	ISM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	1157	1516	516	1274	3prime_fragment	FALSE	canonical	3	6480	junction_2	163	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAATTTGCATTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	57966097	57967517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_57966242_57966323_57966499_57966999
96287	chr4	+	2953	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	42.3411798395378	537	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206906	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146291416_146291510_146365127_146365249_146388486_146388614_146390758_146390897_146391646_146393443_146552623
96288	chr12	+	2262	11	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	45	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	193.334321836553	1	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTAAAAAAAGTGTGAAGT	2942	False	NA	NA	False	NA	NA	NA	109612640	109628139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615652_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
96289	chr1	+	2832	19	NIC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	1759	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_12	260.961854504011	2	21	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	1067	False	NA	NA	False	NA	NA	NA	171929061	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
96290	chr6	+	1947	10	Antisense	novelGene_ENSMUSG00000099587.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCAGCGCCAGGCGTCGC	NA	False	NA	NA	False	NA	NA	NA	125157360	125168622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_125158140_125160876_125161025_125161191_125161313_125161394_125161526_125162656_125162799_125163061_125163247_125163718_125163776_125164039_125164116_125166725_125166868_125168456
96291	chr2	-	2593	8	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	2233	multi-exon	FALSE	non_canonical	0	0	junction_1	59.3127305053477	1	48	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTTCTCTAAGGCCCC	NA	False	NA	NA	False	NA	NA	NA	156681710	156629498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156629506_156631635_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
96292	chr6	+	2743	16	NIC	ENSMUSG00000034269.13	novel	3334	18	NA	NA	-11	3793	combination_of_known_junctions	FALSE	canonical	3	26	junction_4	20.6199471925178	13	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATTCGCTTTGGCTCA	8106	False	NA	NA	False	NA	NA	NA	113054588	113098685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_113054674_113081895_113082083_113082877_113083103_113086845_113086952_113087277_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528
96293	chr11	+	4530	28	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-7	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	55.0372364285307	11	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771171	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
96294	chr16	+	4878	5	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1632	junction_1	196.719819794549	1	113	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22929094_22929329_22930343_22930566
96295	chr14	+	5240	14	Fusion	ENSMUSG00000040840.8_ENSMUSG00000040822.8	novel	968	6	NA	NA	-5168	-156	intron_retention	FALSE	non_canonical	0	0	junction_1	0	18	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGCCGGGGCGCTGGGGC	NA	False	NA	NA	False	NA	NA	NA	54882799	54924398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_+_54882814_54883061_54883198_54883904_54884024_54884158_54884296_54885546_54885590_54886984_54889316_54899624_54899743_54901045_54901263_54901828_54903091_54904528_54904618_54916198_54916327_54916704_54916812_54922469_54922537_54923926
96296	chr17	+	7280	12	Intergenic	novelGene_276	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTCGGTCTCTCACCA	NA	False	NA	NA	False	NA	NA	NA	66276104	66384009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_66277333_66279291_66279388_66283015_66283158_66286495_66286596_66289830_66294489_66331070_66331219_66334246_66334388_66338363_66338569_66344489_66344635_66356780_66356929_66359948_66360085_66383876
96297	chr17	-	1203	4	FSM	ENSMUSG00000116995.2	ENSMUST00000232087.2	1210	4	22	-15	22	15	multi-exon	FALSE	canonical	2	4	junction_1	2.62466929133727	48	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATCCGGCCCTATCA	NA	False	NA	NA	False	NA	NA	NA	3165048	3162049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_3162848_3163562_3163623_3164462_3164621_3164861
96298	chr16	-	4971	31	FSM	ENSMUSG00000064061.14	ENSMUST00000114516.8	3331	31	-1	-1639	-1	-6	multi-exon	FALSE	canonical	3	44	junction_18	21.5464614264152	129	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGAATATCTATTTCTT	4420	False	NA	NA	False	NA	NA	NA	48814305	48744602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
96299	chr2	-	8146	36	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	273	23	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATGGCGGCGGGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	52012072	51962853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51962879_51963148_51963264_51964256_51964336_51965239_51965329_51966090_51966186_51966988_51967120_51967203_51967298_51968340_51968533_51971237_51971329_51972674_51972814_51975036_51975189_51978657_51978773_51979530_51979696_51980180_51980295_51982051_51982115_51982289_51982390_51983509_51983582_51984602_51984675_51985833_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993710_51994557_51994599_51995444_51995650_51996912_51997013_51997649_51997768_51998449_51998603_51999202_51999288_51999362_51999413_51999920_52003011_52006257_52006402_52006841_52006962_52009027_52009181_52010269_52010379_52011001
96300	chrX	+	4473	4	Intergenic	novelGene_3971	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAGACTGATTCATGTA	NA	False	NA	NA	False	NA	NA	NA	88343868	88350999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_88345010_88345080_88345210_88347580_88348904_88349119
96302	chr18	+	2766	14	NNC	ENSMUSG00000037236.17	novel	1888	14	NA	NA	-7	-3	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	401.830324225855	1	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACTTAGGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	35695256	35724469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712434_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
96304	chr17	-	658	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4732	3	1197	-3	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	207	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45879465	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
96305	chr8	-	1990	9	NIC	ENSMUSG00000003809.15	novel	2167	11	NA	NA	142	-200	intron_retention	FALSE	canonical	3	233	junction_5	23.0054341406547	1	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTACTCCTAGGACTGGA	NA	False	NA	NA	False	NA	NA	NA	85620404	85613221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076
96306	chr17	-	1687	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	78	884	-11	800	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36149120	36145696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
96308	chr17	-	2368	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	3302.97381158253	1	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882417_45882703_45882838_45884092
96309	chr3	-	2061	12	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	-6	0	intron_retention	FALSE	non_canonical	0	0	junction_10	214.701946008495	5	35	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAGTGTGTAGGGACCT	NA	False	NA	NA	False	NA	NA	NA	88821216	88816950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88817218_88817436_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819608_88820009_88820086_88820164_88820235_88820765_88821010_88821099
96310	chr9	-	2221	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	-1607	5	-1607	-5	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	417	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGCGTCGTCATTA	NA	False	NA	NA	False	NA	NA	NA	78277066	78274338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
96311	chr2	-	4639	6	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3609	2786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.248849752835	17	45	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	175895227	175880597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175882264_175882314_175884942_175886096_175886158_175886363_175886491_175891615_175891671_175895124
96313	chr11	-	1058	5	Antisense	novelGene_ENSMUSG00000002064.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTAGGCCCGTCCCCGG	3162	False	NA	NA	False	NA	NA	NA	78146310	78136816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_78136995_78141244_78141372_78141841_78142037_78145674_78145736_78145813
96314	chr4	+	2663	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	12	-1876	multi-exon	TRUE	non_canonical	0	0	junction_1	40.0169885798519	1	53	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206912	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207269_146207708_146207846_146291416_146291510_146365127_146365231_146388486_146388614_146390758_146390897_146391646_146392442_146392778_146393429_146552609
96315	chr4	-	2452	16	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	338.386655896607	1119	23	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484693	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468185_116468267_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
96316	chr13	+	3083	5	Fusion	ENSMUSG00000063905.3_ENSMUSG00000113008.2	novel	327	2	NA	NA	-8722	-236	multi-exon	FALSE	non_canonical	0	0	junction_1	14.7732867026942	39	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	65651769	65662556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_65651887_65658192_65658320_65658519_65658581_65659713_65661130_65661194
96317	chr2	-	4400	5	NNC	ENSMUSG00000078899.10	novel	4402	5	NA	NA	-35	-9	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	112.393004675558	4	90	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCCAACTTGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	175180025	175163756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175167842_175168998_175169060_175169264_175169392_175176415_175176471_175179953
96318	chr12	+	4888	5	ISM	ENSMUSG00000079179.10	ENSMUST00000179924.8	823	8	-448	6968	-37	1566	intron_retention	FALSE	canonical	3	40	junction_4	60.7345659406569	4	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGACACTACAGAAAAGATAC	NA	False	NA	NA	False	NA	NA	NA	3285466	3292976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833
96319	chr10	+	2853	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	67	6	-9	-6	multi-exon	FALSE	canonical	3	1246	junction_9	132.722869167299	34	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGTTTGAGCTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	128173669	128198342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
96320	chr16	+	5847	11	Antisense	novelGene_ENSMUSG00000022914.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	41	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATCAATTCTGCCAAGTCT	NA	False	NA	NA	False	NA	NA	NA	95793655	95819220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_95795178_95803633_95804554_95805058_95805915_95806165_95806330_95809036_95809414_95809918_95810775_95811022_95811187_95812908_95813137_95814908_95815076_95817307_95817455_95818774
96321	chr13	-	4476	20	NNC	ENSMUSG00000021670.15	novel	4425	20	NA	NA	-12	1	intron_retention	FALSE	non_canonical	0	0	junction_1	110.510424922812	4	70	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGTAAGCAGTGGCTT	NA	False	NA	NA	False	NA	NA	NA	96807395	96785473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_96786231_96786277_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
96322	chr3	+	1334	7	NNC	ENSMUSG00000005687.15	novel	1467	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1424.08868520655	3	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATATGTT	5044	False	NA	NA	False	NA	NA	NA	103079085	103086468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_103079182_103079281_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
96323	chr17	-	4710	13	NNC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	-4	10784	intron_retention	FALSE	non_canonical	0	0	junction_1	80.9486720088724	595	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCGCCTTCGCCAGCCGC	NA	False	NA	NA	False	NA	NA	NA	25459102	25441520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25441695_25447554_25447637_25449176_25449381_25449491_25449748_25450683_25453697_25453781_25453864_25453953_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458946_25459033
96325	chr8	-	365	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	59	25	44	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACTTTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108166152	108165787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
96326	chrY	+	4683	5	Intergenic	novelGene_4707	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	47718852	47725616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_47719285_47719353_47719755_47719850_47722351_47723786_47724481_47724960
96327	chr15	+	855	3	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-97648	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	98830123	98935994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98830228_98935068_98935422_98935596
96328	chr4	+	4312	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159905	182155	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	183.323102744853	87	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146426578	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426705_146428056_146428160_146616529_146616611_146800390_146800518_146802050_146802612_146802693
96329	chr16	+	5016	31	NNC	ENSMUSG00000025616.15	novel	3205	18	NA	NA	-5	12380	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	114.721542101831	237	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCCGGTCGCCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	87251909	87292785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266565_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87278601_87278689_87279747_87279905_87279994_87280954_87281691_87281814_87282469_87282633_87282721_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592_87290674_87291223_87291316_87292616
96331	chr5	+	926	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	923	274	-5	1	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	319	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121343466	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
96332	chr4	-	2631	7	NNC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	14	0	intron_retention	FALSE	non_canonical	0	0	junction_1	409.190834316812	11	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAGTCAAATGGATTCA	NA	False	NA	NA	False	NA	NA	NA	148711197	148701181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148702953_148703176_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
96333	chr15	-	2283	9	NNC	ENSMUSG00000018042.19	novel	2422	9	NA	NA	393	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	536.279763160051	4	87	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACCCTGCCAGCGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	83056400	83037698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050466_83056112
96336	chr11	-	7026	4	Intergenic	novelGene_2456	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	126	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTCAGTAGTGGAAATTG	NA	False	NA	NA	False	NA	NA	NA	90858101	90720333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_90720479_90720589_90723846_90854397_90857418_90857496
96337	chr9	+	679	5	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8157.08553957846	158	16	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082569_64085242_64085300_64085504
96338	chr17	+	1956	2	Intergenic	novelGene_266	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	72	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCACGCCCACTGCTAGAAC	NA	False	NA	NA	False	NA	NA	NA	54415332	54443327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_54416384_54442422
96339	chrUn_MU069435v1	+	556	1	Intergenic	novelGene_4737	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAAGTCAGCCCTCGACA	NA	False	NA	NA	False	NA	NA	NA	0	556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
96340	chrX	-	896	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	74	5	16	-5	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	45	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTACTTTTGGTTTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	101232926	101228551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
96341	chr16	+	1649	7	NIC	ENSMUSG00000055692.22	novel	1627	8	NA	NA	5	-9	intron_retention	FALSE	canonical	3	186	junction_5	33.1331488928468	1	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTTATTTATAGGTGT	NA	False	NA	NA	False	NA	NA	NA	17094216	17096512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17094333_17094497_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
96342	chr16	-	564	1	Intergenic	novelGene_3774	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96343	chr16	+	3051	19	Antisense	novelGene_ENSMUSG00000061751.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	11	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACAGGAAATGCCTGTGA	3583	False	NA	NA	False	NA	NA	NA	33833516	33996203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_33834052_33834327_33834585_33836761_33837001_33848307_33848480_33849009_33849199_33851925_33852004_33852789_33852838_33853875_33853969_33854824_33854916_33855208_33855275_33855422_33855526_33855861_33855928_33860246_33860380_33873929_33874032_33875201_33875486_33936591_33936838_33991643_33991744_33994753_33994897_33996097
96344	chr11	+	3216	14	NNC	ENSMUSG00000020359.14	novel	3116	13	NA	NA	-13	246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	7.99630091994835	1006	20	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACAGGGTCCTTCTTCATA	NA	False	NA	NA	False	NA	NA	NA	51475602	51495562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_51475707_51476340_51476460_51477387_51477548_51482225_51482301_51482832_51482921_51482995_51483113_51484430_51484514_51484742_51484969_51489102_51489258_51489477_51489568_51490292_51490424_51491395_51491450_51493621_51495361_51495487
96345	chr17	-	1090	4	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	3877	18	342	-18	3prime_fragment	FALSE	canonical	3	10930	junction_2	575.852025745812	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45880320	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165
96347	chr11	-	1159	7	NNC	ENSMUSG00000006057.16	novel	4715	5	NA	NA	21	31808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4759.9164120812	1694	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTTCAAGCCAAAGCCCC	3500	False	NA	NA	False	NA	NA	NA	95966475	95927869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95928094_95959686_95960020_95963769_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
96348	chrM	+	537	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	603	4	603	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTCTTGATAGTATAAA	-2	True	NA	-23	True	NA	NA	NA	14747	15284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14700_15300
96349	chr2	+	4284	6	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078866.11	novel	794	4	NA	NA	5	2546	intron_retention	FALSE	canonical	1	1	junction_1	93.896538807349	9	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177156530	177204102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177156614_177193535_177193591_177194885_177194988_177198701_177198829_177199035_177199097_177200246
96350	chr1	-	4723	5	FSM	ENSMUSG00000047539.10	ENSMUST00000051431.10	4925	5	186	16	139	-16	multi-exon	FALSE	canonical	3	148	junction_1	16.5604951616792	128	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTAGTTTACCGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	182168997	182140682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_182144851_182145374_182145571_182153818_182153958_182157438_182157549_182168887
96351	chr19	+	6142	3	Antisense	novelGene_ENSMUSG00000094936.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	50	68	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAACTCTCATTTAACAT	724	False	NA	NA	False	NA	NA	NA	4840169	4848150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_4840911_4842317_4847212_4847643
96352	chr10	-	2560	16	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	368	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.319413120902	33	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAAAAGTCGGAGTGGTG	NA	False	NA	NA	False	NA	NA	NA	62175953	62104890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105177_62111503_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
96353	chr8	-	1590	6	NNC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	10	-450	intron_retention	FALSE	canonical	3	5	junction_1	17.8504901893477	8	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGACACACCGGAAGCTTC	NA	False	NA	NA	False	NA	NA	NA	72124370	72113439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_72113477_72114462_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
96354	chr6	-	1960	12	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3798.32512893828	1	70	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1577	False	NA	NA	False	NA	NA	NA	7693244	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676305_7677230_7677332_7677939_7678027_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685408_7689251_7689524_7693108
96355	chr11	-	3182	19	ISM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	6152	2038	6152	758	3prime_fragment	FALSE	canonical	3	859	junction_18	101.233259551919	78	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATTTAAATGCTTGAAAT	NA	False	NA	NA	False	NA	NA	NA	97072555	97052577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450
96356	chr18	+	2237	10	NNC	ENSMUSG00000024576.15	novel	2323	10	NA	NA	-1	30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	831.657485290372	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGGCTGACTCACTAT	466	False	NA	NA	False	NA	NA	NA	61688382	61721405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689577_61689681_61701334_61701462_61702534_61702568_61708527_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
96358	chr9	+	2284	4	Antisense	novelGene_ENSMUSG00000110834.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAGCCAGCTTGCTACT	9061	False	NA	NA	False	NA	NA	NA	124031177	124044782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_124033193_124033752_124033816_124033998_124034126_124044703
96359	chr14	+	4088	1	Intergenic	novelGene_623	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCAGGACCAGATGGGTT	NA	False	NA	NA	False	NA	NA	NA	79123809	79127897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_79123800_79127900
96360	chr9	-	761	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	4	3	4	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	52	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAAGAGACAGGGAAT	NA	False	NA	NA	False	NA	NA	NA	50256264	50255503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
96361	chrX	-	2564	9	ISM	ENSMUSG00000031386.15	ENSMUST00000033761.13	8138	26	16287	1901	-817	628	internal_fragment	FALSE	canonical	3	318	junction_7	70.2348738163599	4	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGCACCAAGCCGGCCAG	NA	False	NA	NA	False	NA	NA	NA	72993676	72988298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72988316_72988738_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803
96362	chr13	+	1349	1	Intergenic	novelGene_1398	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	111	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATTTATTTTCATTT	NA	False	NA	NA	False	NA	NA	NA	62403244	62404593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62403200_62404600
96363	chr11	-	4366	9	NIC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	0	10	intron_retention	FALSE	canonical	3	16927	junction_6	2010.17231459768	47	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGCTTATTTAACTCTC	NA	False	NA	NA	False	NA	NA	NA	33113077	33102499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
96364	chr11	+	593	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	153	576	153	-13	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAAGAGCCATGCTGT	4110	False	NA	NA	False	NA	NA	NA	100210863	100212346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
96365	chr17	+	4890	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	3	14939	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	28.1108915230774	58	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAGCAATTGTGATAAAAA	NA	False	NA	NA	False	NA	NA	NA	95057542	95097499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912
96367	chrUn_JH584304v1	-	2394	3	Intergenic	novelGene_4681	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	21	junction_2	439.5	17	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATGTGTTGTCCTGGGC	NA	False	NA	NA	False	NA	NA	NA	59665	53137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55702_59591
96368	chr17	-	7941	19	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10120	8346	intron_retention	FALSE	non_canonical	0	0	junction_1	363.236684393095	117250	34	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCGCAGGCGCGGTCA	2348	False	NA	NA	False	NA	NA	NA	6744541	6697576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699322_6702404_6702530_6702867_6702945_6703293_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716012_6716181_6716279_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
96369	chr9	-	1631	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	54	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5026.41413952738	48	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAGTTTAATGAGAAATC	7154	False	NA	NA	False	NA	NA	NA	78388952	78385752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386778_78386953_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
96370	chr5	-	3100	1	Antisense	novelGene_ENSMUSG00000063430.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	83	62	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTCCTTAACCTGGAAA	NA	False	NA	NA	False	NA	NA	NA	113710007	113706907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_113706900_113710000
96371	chr4	+	2741	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5_ENSMUSG00000066007.16	novel	4244	5	NA	NA	-23	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	54.2483998739953	8	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146093370	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093469_146094927_146095022_146209452_146209546_146211490_146211604_146312913_146312972_146388486_146388614_146390758_146390904_146391317_146392124_146392460_146393458_146552638
96372	chr4	-	4236	26	NIC	ENSMUSG00000038764.15	novel	6369	26	NA	NA	0	-2131	combination_of_known_junctions	FALSE	canonical	2	9	junction_25	11.3804042107475	53	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGTGGTATTTTTAAATA	39	True	NA	NA	False	NA	NA	NA	57300756	57192971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_57194363_57195701_57195838_57196350_57196497_57197505_57197635_57204906_57205054_57205884_57205947_57206213_57206305_57218508_57218670_57221897_57222055_57223618_57223676_57225505_57225584_57225713_57225901_57232321_57232499_57235221_57235357_57239527_57239701_57240785_57240850_57244974_57245064_57248657_57248746_57249907_57250029_57254916_57254970_57257974_57258020_57262428_57262508_57264865_57264909_57264982_57265091_57270022_57270178_57300592
96373	chr14	+	1028	7	NNC	ENSMUSG00000021771.15	novel	893	9	NA	NA	50	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	845.508279084244	10	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACTCTGCAGTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	21881683	21895944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21895352
96374	chr4	+	5656	29	NNC	ENSMUSG00000058006.13	novel	17970	102	NA	NA	-5933	1	at_least_one_novel_splicesite	TRUE	canonical	2	6	junction_15	40.0232553572015	146	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTGATCAGGGTTTACT	NA	False	NA	NA	False	NA	NA	NA	32744637	32775199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_32744705_32745581_32745729_32746440_32746568_32747843_32747950_32748574_32748691_32749552_32750036_32750249_32750477_32750912_32751069_32751211_32751394_32752030_32752193_32754429_32754568_32756376_32756516_32757736_32757907_32758355_32758500_32759049_32759198_32760622_32760943_32761203_32761372_32762251_32762354_32763156_32763353_32765108_32765277_32765661_32765826_32767081_32767172_32767941_32768058_32768652_32768828_32770269_32770344_32770877_32770993_32771836_32771901_32773259_32773403_32773950
96376	chr3	+	2075	3	ISM	ENSMUSG00000027796.3	ENSMUST00000029371.3	5368	6	26619	10827	26619	-10827	internal_fragment	FALSE	canonical	2	9	junction_1	0.5	27	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTAGTTGAGGTTACC	NA	False	NA	NA	False	NA	NA	NA	54689621	54697851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_54690194_54693484_54693743_54696606
96377	chr12	-	5762	5	Intergenic	novelGene_4411	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTAGCAAGATTTTATC	NA	False	NA	NA	False	NA	NA	NA	77684283	77452078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_77456182_77501727_77501736_77599262_77600570_77616271_77616539_77684206
96378	chr1	-	1628	8	NNC	ENSMUSG00000026035.16	novel	1363	7	NA	NA	1	-7	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	94.6428301886754	10	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATCACATGTGAGTGTC	NA	False	NA	NA	False	NA	NA	NA	58484597	58470162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58470490_58471230_58471497_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
96380	chrM	+	1510	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-269	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	20	False	NA	NA	False	NA	NA	NA	9897	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_11065_11201
96381	chr17	+	1774	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1039.68335135001	16	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135277	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141573_13142209_13142298_13142416_13142581_13143146
96382	chr9	+	859	6	ISM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	98	1215	-2	142	5prime_fragment	FALSE	canonical	3	2998	junction_3	974.34416917227	11	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCCCACGGGTGCGTATC	NA	False	NA	NA	False	NA	NA	NA	119956852	119960220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065
96383	chr11	-	2346	14	ISM	ENSMUSG00000020422.15	ENSMUST00000239091.2	7897	31	145281	2491	-10931	-2491	3prime_fragment	FALSE	canonical	3	46	junction_5	8.80424857096892	4	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCCTGCTTGACAGGGA	NA	False	NA	NA	False	NA	NA	NA	8429606	8384142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_8384639_8385715_8385743_8385845_8385915_8387103_8387273_8393934_8394013_8394945_8395024_8395645_8395742_8398689_8398822_8400069_8400157_8400854_8401496_8403078_8403251_8428224_8428306_8428392_8428511_8429504
96384	chr7	-	3372	5	Intergenic	novelGene_2949	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	31	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTTTTTGGTCTTGAAA	NA	False	NA	NA	False	NA	NA	NA	42914394	42904900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_42906981_42910108_42910231_42910424_42910497_42912714_42913651_42914232
96385	chr2	-	3143	15	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	52	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	648.445680855697	70	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTGGTTATGGTAC	NA	False	NA	NA	False	NA	NA	NA	103627397	103595357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103596814_103602138_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605844_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
96386	chr2	+	7456	33	Antisense	novelGene_ENSMUSG00000026987.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	169	81	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCCTGAGCTGGCTGAA	NA	False	NA	NA	False	NA	NA	NA	59729706	59814200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_59731144_59731815_59731969_59732075_59732335_59733501_59733650_59737259_59737398_59737891_59738093_59742024_59742187_59742745_59742902_59743072_59743352_59743885_59744531_59747687_59747845_59748783_59748845_59750637_59750882_59752485_59752564_59753884_59754092_59754996_59755261_59756365_59756504_59762447_59762517_59763993_59764057_59765556_59765627_59767031_59767098_59773107_59773170_59773283_59773375_59778430_59778647_59787977_59788083_59788775_59788833_59790160_59790450_59792364_59792978_59798973_59799365_59799559_59799763_59807702_59807894_59808883_59809050_59814123
96387	chrX	-	1495	10	NNC	ENSMUSG00000071708.12	novel	3717	11	NA	NA	12	30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	195.352103762525	1	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGGAGACCTCTTACGGT	NA	False	NA	NA	False	NA	NA	NA	156275028	156228661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239080_156244177_156244292_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
96389	chr5	+	3513	11	NIC	ENSMUSG00000029283.18	novel	2961	12	NA	NA	27	0	intron_retention	FALSE	canonical	3	169	junction_7	35.5870763058726	9	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	NA	False	NA	NA	NA	107112214	107132297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
96390	chr4	+	1182	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	45	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTCTTCTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	91739796	91740978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739800_91741000
96391	chr13	+	2438	7	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	2	515	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	29.584624384974	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGTGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	62277731	62321748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62318963_62319241_62319323_62319848_62319931_62320193_62320444_62320591_62320756
96392	chrM	-	831	1	Antisense	novelGene_ENSMUSG00000064337.1_AS_novelGene_ENSMUSG00000064338.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTGCTGAGTCCCGTGGG	5327	False	NA	NA	False	NA	NA	NA	1075	244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1100
96393	chr13	-	6087	3	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	84899	1098	12303	-1098	3prime_fragment	FALSE	canonical	3	84	junction_1	0	12	224	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCCGAACCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	99568149	99559051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_99562470_99563726_99563966_99565719
96394	chr11	-	1228	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	113	2	-83	-2	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	9248	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCCAACTCAGTTGTT	6384	False	NA	NA	False	NA	NA	NA	69812099	69807547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
96395	chr9	-	3853	6	FSM	ENSMUSG00000053040.14	ENSMUST00000169282.8	5205	6	15	1337	15	-1337	multi-exon	FALSE	canonical	2	9	junction_1	3.03315017762062	132	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAATATAATAAAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	66741993	66723612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741767
96396	chr16	+	1479	4	NNC	ENSMUSG00000002845.15	novel	2667	9	NA	NA	-10	24	intron_retention	FALSE	canonical	0	0	junction_2	141.027184140742	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTGACTTGTTTGTCTG	1796	False	NA	NA	False	NA	NA	NA	38405767	38411732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_38405881_38405980_38406775_38408552_38408666_38411273
96397	chr15	-	6085	30	NIC	ENSMUSG00000022377.17	novel	4582	31	NA	NA	2	-5	combination_of_known_junctions	TRUE	canonical	3	31	junction_28	23.6466758642573	111	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAAGCATCTGACATCA	NA	False	NA	NA	False	NA	NA	NA	64254603	63958710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_63961371_63963896_63964020_63965857_63966358_63971380_63971440_63974251_63974322_63982754_63982926_63991806_63992036_63993856_63993965_63995520_63995589_63995713_63995830_63996163_63996250_63996566_63996754_63999220_63999313_64001019_64001154_64001952_64002117_64007654_64007704_64009802_64009891_64021454_64021525_64024678_64024780_64030730_64030854_64032070_64032147_64038308_64038395_64039548_64039679_64044533_64044584_64045066_64045142_64063332_64063479_64080332_64080406_64184197_64184325_64221676_64221763_64254565
96398	chr4	+	1832	7	NIC	ENSMUSG00000028601.19	novel	1238	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_1	290.35304181098	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGCTGGAATTGTTG	NA	False	NA	NA	False	NA	NA	NA	108022662	108036504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031372_108034269_108034321_108035567
96399	chr17	+	4381	7	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	2606	-19	intron_retention	FALSE	canonical	3	2243	junction_1	115.493746824473	2	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATTCTGGCCGGGCAG	8769	False	NA	NA	False	NA	NA	NA	56622268	56630467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56622316_56622398_56622507_56622776_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
96400	chr14	+	5344	9	FSM	ENSMUSG00000036291.7	ENSMUST00000227410.2	2544	9	-3	-2797	-3	-636	multi-exon	TRUE	canonical	3	29	junction_2	33.1200467994838	5	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTTTGTTTCATGTGCA	NA	False	NA	NA	False	NA	NA	NA	49303984	49327619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_49304322_49311005_49311200_49311426_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
96401	chr17	+	1530	9	NNC	ENSMUSG00000116895.2	novel	1684	12	NA	NA	68	-2436	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_6	81.3279433835628	9	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATTTTGAGGCCCAACAT	NA	False	NA	NA	False	NA	NA	NA	15230505	15240275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15230534_15231134_15231304_15231891_15232145_15233209_15233312_15233933_15234024_15236450_15236549_15238346_15238462_15239227_15239331_15239703
96402	chr2	+	3642	3	Intergenic	novelGene_2568	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	45	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATTTCTGATTTTGTT	365	False	NA	NA	False	NA	NA	NA	16409068	16439898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_16409870_16413743_16413830_16437143
96403	chr3	-	3971	12	FSM	ENSMUSG00000028018.16	ENSMUST00000029651.11	3503	12	15	-483	15	483	multi-exon	FALSE	canonical	3	158	junction_3	19.4795930515641	93	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGAGCCGCCACTGGAGAA	NA	False	NA	NA	False	NA	NA	NA	132797571	132687029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_132688981_132692145_132692216_132701926_132701958_132704585_132704720_132709424_132709554_132711148_132711194_132711320_132711437_132768326_132768421_132777660_132777913_132787799_132788268_132790336_132790787_132797340
96404	chr17	+	967	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	16	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1751.13484632109	110	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3052	False	NA	NA	False	NA	NA	NA	35816930	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35820939_35821463
96405	chr11	+	2837	16	Antisense	novelGene_ENSMUSG00000051378.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	20	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCAACCTTCTTCCGGCG	NA	False	NA	NA	False	NA	NA	NA	102796730	102815914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102797102_102797317_102797407_102797820_102797905_102798940_102799465_102799712_102799917_102803177_102803296_102803745_102803915_102804275_102804375_102804507_102804585_102805075_102805252_102805363_102805563_102805640_102805752_102805975_102806055_102806422_102806527_102807014_102807344_102815810
96406	chr1	-	842	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	-3	-161	3	mono-exon	FALSE	NA	NA	NA	NA	NA	7	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
96407	chr17	-	2200	12	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-8894	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	207.452712923147	2	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	45735504	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722894_45724085_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426
96408	chr1	-	4134	18	FSM	ENSMUSG00000025932.15	ENSMUST00000027066.13	4347	18	207	6	58	-2	multi-exon	FALSE	canonical	3	31	junction_13	8.24998689314257	60	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTATGCTCCTTGGATG	NA	False	NA	NA	False	NA	NA	NA	14380217	14239183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_14241221_14249703_14249805_14253380_14253503_14253604_14253720_14254572_14254734_14254849_14254909_14279118_14279209_14299716_14299801_14301636_14301777_14322651_14322839_14323243_14323327_14340928_14341067_14344288_14344432_14344757_14344828_14353344_14353423_14372993_14373122_14374648_14374699_14379869
96409	chr3	+	3339	13	ISM	ENSMUSG00000028101.19	ENSMUST00000162934.8	2281	14	-11	-585	-11	-11	intron_retention	FALSE	canonical	3	24	junction_10	49.2191104484156	20	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAACATTTAAAGT	2635	False	NA	NA	False	NA	NA	NA	96603746	96613375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610945_96611054_96611224_96611374_96611509_96611664
96410	chr7	+	4466	5	FSM	ENSMUSG00000011427.17	ENSMUST00000032796.14	3376	5	-10	-1080	-5	1015	multi-exon	FALSE	canonical	3	32	junction_1	5.78791845139511	61	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATTCATTCATGCTGACC	NA	False	NA	NA	False	NA	NA	NA	29515533	29531445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29515715_29522404_29522570_29524254_29524379_29525116_29525213_29527545
96411	chr4	-	3319	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	105.051839055244	837	31	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9499	False	NA	NA	False	NA	NA	NA	147894269	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845802_147860024_147860286_147891546_147891641_147893153_147893289_147893953
96412	chr11	+	1956	11	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-118894	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1518.82266575134	3318	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	52132792	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52132823_52251883_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52277193_52277299_52278242_52278301_52279258
96413	chr10	+	876	1	FSM	ENSMUSG00000091086.3	ENSMUST00000171120.3	871	1	-3	-2	-3	2	mono-exon	FALSE	NA	NA	NA	NA	NA	330	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATTAAAAGTTTTCCTCA	NA	False	NA	NA	False	NA	NA	NA	110961708	110962584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_110961700_110962600
96414	chr16	+	1895	11	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	3	441	junction_1	507.107927368524	3	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
96415	chr1	-	2069	3	NNC	ENSMUSG00000101549.2	novel	359	4	NA	NA	5635	23199	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	0.5	2	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACTATACATAAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	132202514	132179254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_132181184_132181744_132181824_132202453
96416	chr13	+	904	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	5	29	5	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	6	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAAAAACAAA	7967	False	NA	NA	False	NA	NA	NA	74554532	74555436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
96417	chr18	+	2509	10	NIC	ENSMUSG00000024234.8	novel	2651	9	NA	NA	0	-9	combination_of_known_junctions	FALSE	canonical	2	4	junction_6	69.4482665614849	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTACTGAATTGTGATAA	-1	True	NA	NA	False	NA	NA	NA	4375602	4397319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4386383_4386952_4387008_4387127_4387180_4394973_4395067_4395155_4395230_4396104
96418	chr9	-	1018	2	Genic_Genomic	ENSMUSG00000082465.2	novel	750	1	NA	NA	-1901	39	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAACAA	6864	False	NA	NA	False	NA	NA	NA	53603484	53600794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_53601611_53603282
96419	chr11	+	3913	6	ISM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	20	231	20	-231	intron_retention	FALSE	canonical	3	149	junction_3	12.3773987574126	2	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTCGTGGGTAGAGTTC	NA	False	NA	NA	False	NA	NA	NA	109317071	109327584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715
96420	chr9	+	3414	24	NNC	ENSMUSG00000032187.17	novel	6354	34	NA	NA	-16	-12999	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	189.819335058873	4	42	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCGTGCAACGAACCATAAAG	1316	False	NA	NA	False	NA	NA	NA	21527543	21584525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558756_21558931_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583378_21584459
96421	chr2	-	1014	4	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	14	93	multi-exon	FALSE	canonical	0	0	junction_3	79.3011139055856	18	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGAAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	156681798	156631638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156679742_156679834_156680337_156680454_156681718
96422	chr16	-	564	1	Intergenic	novelGene_3775	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96423	chr14	-	2245	5	NNC	ENSMUSG00000060373.16	novel	660	3	NA	NA	7	1332	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1323.98848182301	10	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTAAATTGGACCTCTGAC	8732	False	NA	NA	False	NA	NA	NA	52341478	52317397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52318627_52318780_52319361_52321571_52321849_52335471_52335498_52341345
96424	chr1	+	827	6	Antisense	novelGene_ENSMUSG00000043716.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	198	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGTGGCAACCTTC	NA	False	NA	NA	False	NA	NA	NA	16171524	16173876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_16171582_16171948_16172165_16172717_16172823_16172915_16173053_16173389_16173559_16173733
96425	chr15	-	2166	10	FSM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	280	1150	260	0	multi-exon	FALSE	canonical	1	385	junction_5	229.121025758101	539	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATCTGGATCGATTGTGT	NA	False	NA	NA	False	NA	NA	NA	98431865	98416688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
96426	chr9	+	2645	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	29	157	intron_retention	FALSE	non_canonical	0	0	junction_5	6530.59525306652	4	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCCAGCTGCATAAACT	NA	False	NA	NA	False	NA	NA	NA	64080703	64085709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084599_64084760_64085002_64085087_64085178_64085300_64085504
96427	chr18	+	5218	7	NNC	ENSMUSG00000024525.8	novel	5054	8	NA	NA	28	-1159	intron_retention	FALSE	canonical	3	39	junction_2	420.200745676	18	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATGAGAAAACATTCAAGC	NA	False	NA	NA	False	NA	NA	NA	67422283	67454383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_67422577_67435245_67435380_67439542_67439846_67442121_67442168_67443716_67443826_67448689_67450104_67451464
96428	chr4	-	2572	7	NNC	ENSMUSG00000041459.16	novel	1773	10	NA	NA	0	3	intron_retention	FALSE	non_canonical	0	0	junction_1	409.190834316812	1	72	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATTCATCACCTGTCATG	NA	False	NA	NA	False	NA	NA	NA	148711219	148701169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148702839_148703155_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
96429	chr13	-	2843	7	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	13	-339	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	35.0745238345757	31	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	7294	False	NA	NA	False	NA	NA	NA	65496398	65484374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65486600_65487103_65487225_65488362_65488424_65488791_65488919_65491576_65491654_65492244_65492376_65496297
96430	chr11	+	538	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	213	571	-111	-8	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGCCATGCTGTGTAGT	4170	False	NA	NA	False	NA	NA	NA	100210923	100212351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
96431	chr13	+	2911	6	FSM	ENSMUSG00000042348.11	ENSMUST00000224858.2	1966	6	-68	-877	20	-584	multi-exon	FALSE	canonical	3	25	junction_1	177.959995504608	2	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAGCTGTTTTTGACAAG	NA	False	NA	NA	False	NA	NA	NA	113931060	114293413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_113931233_114037538_114037690_114058782_114058928_114070599_114070660_114104117_114104327_114291239
96432	chr15	+	6622	35	NNC	ENSMUSG00000022142.9	novel	7832	35	NA	NA	12	-1137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	56.5859422306591	2	81	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACACACTCTCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	8138831	8189594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_8139087_8141766_8141905_8143127_8143225_8144962_8145034_8145913_8146007_8146717_8146885_8147465_8147572_8148662_8148737_8149917_8150010_8150946_8151045_8151539_8151693_8153706_8153808_8157891_8158063_8159608_8159720_8160945_8161041_8163558_8163648_8164146_8164210_8165241_8165390_8166116_8166184_8167337_8167454_8169334_8169433_8170712_8170844_8172449_8172644_8173534_8173674_8174971_8175108_8176626_8176781_8176981_8177087_8177780_8177936_8180241_8180372_8181196_8181311_8182599_8182721_8183123_8183235_8184399_8184537_8186169_8186277_8187109
96435	chr14	+	1872	13	ISM	ENSMUSG00000021957.8	ENSMUST00000225857.2	1962	14	1111	6	-970	-6	3prime_fragment	FALSE	canonical	3	1855	junction_2	151.898792146467	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAATCCTCAGACTCTTT	NA	False	NA	NA	False	NA	NA	NA	30280676	30295575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
96436	chr16	-	2123	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1204	-3	695	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	409	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
96437	chr13	-	897	7	Antisense	novelGene_ENSMUSG00000064138.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	4	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGAATTTAAACGTCATTA	NA	False	NA	NA	False	NA	NA	NA	78100167	77856821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_77856971_77907544_77907649_77909956_77910056_77973439_77973507_77982626_77982819_78050770_78050987_78100097
96439	chr7	+	5618	19	Antisense	novelGene_ENSMUSG00000035401.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGGGCAAGATGGCGAC	NA	False	NA	NA	False	NA	NA	NA	98238163	98305764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98240091_98242536_98243016_98243956_98244524_98246242_98246392_98249878_98250035_98251789_98251957_98259875_98260071_98262185_98262364_98264681_98264825_98268508_98268673_98270590_98270746_98275670_98275925_98279334_98279613_98286465_98286727_98290698_98290876_98295655_98295731_98297011_98297112_98303950_98304059_98305679
96440	chr9	+	588	3	Genic_Genomic	ENSMUSG00000062933.8	novel	490	1	NA	NA	-37	213	multi-exon	TRUE	non_canonical	0	0	junction_1	0	468	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	96777673	96778413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_96777693_96777784_96778116_96778175
96442	chr16	-	564	1	Intergenic	novelGene_3776	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	384	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96445	chr14	+	4567	3	FSM	ENSMUSG00000046204.15	ENSMUST00000089236.11	5518	3	-10	961	-10	-961	multi-exon	FALSE	canonical	3	15	junction_1	6.5	52	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTTTTCTGCTTCCTAT	NA	False	NA	NA	False	NA	NA	NA	67148608	67157511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_67148743_67152770_67152900_67153207
96446	chr7	-	4587	5	FSM	ENSMUSG00000030980.18	ENSMUST00000063607.12	4884	5	317	-20	0	5	multi-exon	FALSE	canonical	3	187	junction_3	184.092877374438	6	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTTTGAATGTGTG	NA	False	NA	NA	False	NA	NA	NA	118454907	118441439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111_118452564_118454845
96447	chr1	-	6632	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9462	-40	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	317.064163099069	871	86	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGGGCTGTGTGTATCCA	NA	False	NA	NA	False	NA	NA	NA	84827699	84702024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738859_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84773410_84773537_84792543_84792691_84827643
96449	chr14	-	881	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	-24	-65	-24	65	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGTTATATGAGATTGC	NA	False	NA	NA	False	NA	NA	NA	88361268	88360387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_88360400_88361300
96450	chr7	+	1274	8	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2432	-19478	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTGCCGGTGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	126394407	126396923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505_126396720_126396814
96451	chr6	+	4682	4	FSM	ENSMUSG00000030031.15	ENSMUST00000032107.10	4869	4	179	8	39	-8	multi-exon	FALSE	canonical	3	65	junction_1	4.18993502999218	1	46	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAAAATGAACTAGTTAG	NA	False	NA	NA	False	NA	NA	NA	95094899	95106763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_95094956_95095503_95095715_95098719_95099829_95103457
96452	chr5	+	3468	18	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4933	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	760.909344890617	4	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAGCTAATGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	108208606	108256866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108220436_108220522_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255736_108256455
96453	chr13	+	4551	9	ISM	ENSMUSG00000021488.9	ENSMUST00000224973.2	9905	21	81412	2097	226	-2097	intron_retention	FALSE	canonical	3	230	junction_8	12.1648828601019	27	52	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATGCAATTCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	55439006	55461471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_55439124_55441370_55441528_55443799_55444006_55446376_55446490_55447503_55447774_55449539_55449657_55450651_55450794_55454748_55454856_55458149
96454	chr6	-	2844	8	NNC	ENSMUSG00000029752.13	novel	2016	12	NA	NA	-79	4	intron_retention	FALSE	canonical	0	0	junction_6	3024.1656430716	48	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	NA	False	NA	NA	False	NA	NA	NA	7682437	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7681571_7681650_7682036_7682270
96455	chrX	-	4922	2	Intergenic	novelGene_4012	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	113	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGATGGAAAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	116231723	116226550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116228171_116228421
96456	chrM	+	2311	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	93	-580	93	580	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	89	False	NA	28	True	NA	NA	NA	11834	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11800_14100
96457	chr12	+	1893	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1908.10962997413	31	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAACTTTCATGGCAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763341_24763541
96458	chr4	+	3590	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	51	83660	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	124.535545290557	1	92	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATATCATTCATTAAT	NA	False	NA	NA	False	NA	NA	NA	147576924	147681603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578928_147592042_147592098_147595209_147595337_147596801_147597165_147598923_147599008_147600725_147603437_147681532
96459	chr2	-	5166	1	Genic_Genomic	ENSMUSG00000086563.2	novel	NA	NA	NA	NA	-32	2793	mono-exon	FALSE	NA	NA	NA	NA	NA	4	123	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTCTTGCAATTTGCA	NA	False	NA	NA	False	NA	NA	NA	150548828	150543662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_150543700_150548800
96460	chr4	-	3057	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	65	-12	intron_retention	FALSE	canonical	0	0	junction_7	713.365437860487	624	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAGGCCAGAGCTGA	NA	False	NA	NA	False	NA	NA	NA	137523630	137469055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137481475_137481612_137482395_137482512_137482940_137483055_137485882_137486044_137523552
96461	chr19	+	2110	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-22	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	36	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1447	False	NA	NA	False	NA	NA	NA	44282492	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291789_44294745
96462	chr7	-	5466	20	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-22	-565	combination_of_known_junctions	FALSE	canonical	3	18	junction_15	21.2537759395772	235	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGAACTGTATATACATT	3480	False	NA	NA	False	NA	NA	NA	98306012	98238707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98295655_98295731_98297011_98297112_98303950_98304060_98305680
96463	chr17	+	4101	12	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGCTGTCTGCTACTGG	2244	False	NA	NA	False	NA	NA	NA	32523977	32540137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32524680_32525462_32525560_32528392_32528523_32529550_32529645_32529925_32530068_32531258_32533118_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536331_32537733_32537786_32540060
96464	chr2	-	3660	5	NNC	ENSMUSG00000078902.4	novel	4516	4	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	51.6333225737023	54	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGCTTCTTGGTCATGAT	NA	False	NA	NA	False	NA	NA	NA	175017647	175008048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175010673_175011510_175012254_175013387_175013449_175013640_175013768_175017542
96465	chr3	-	7876	11	NIC	ENSMUSG00000028106.14	novel	7756	11	NA	NA	-76	-7	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	33.6661551116251	150	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTTGACATTTTTCTT	9936	False	NA	NA	False	NA	NA	NA	95726251	95667659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_95673733_95679307_95679509_95681423_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95693631_95693710_95694595_95694697_95697411_95697542_95725858
96466	chr11	-	1037	1	ISM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	15712	2	15712	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	59103276	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_59102200_59103300
96467	chr15	+	1186	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	5	-189	5	189	mono-exon	FALSE	NA	NA	NA	NA	NA	3	57	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACCAT	167	False	NA	NA	False	NA	NA	NA	12574979	12576165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12575000_12576200
96469	chr8	+	4884	3	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-107	-5603	intron_retention	FALSE	canonical	3	434	junction_2	114.5	2	109	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGATGCTGTAAGATAAAGA	NA	False	NA	NA	False	NA	NA	NA	20697877	20721663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197
96470	chr13	+	5790	13	NIC	ENSMUSG00000039087.18	novel	8395	12	NA	NA	-56	208	combination_of_known_junctions	FALSE	canonical	2	12	junction_12	31.2901963702513	2	217	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCGGAGGACCTTTTCA	NA	False	NA	NA	False	NA	NA	NA	38009894	38133390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_38010029_38072846_38072949_38076527_38076635_38077747_38077961_38082387_38082478_38083599_38083764_38099997_38100137_38100434_38100572_38112098_38112289_38113533_38116466_38125518_38125681_38130832_38131481_38132618
96471	chr11	-	1258	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	131	244	1	-20	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	5	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCAGTATTTTAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	33113075	33102530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
96472	chr4	+	4068	5	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	6	41584	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	56.9912273951	2	112	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAATTATGTCCATCCGC	NA	False	NA	NA	False	NA	NA	NA	146206906	146256588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207267_146209452_146209546_146250678_146250737_146251579_146251707_146253158
96473	chrM	-	869	2	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGATATTAATAAAGAACAC	-1	True	NA	5	True	NA	NA	NA	3704	2770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2780_2844
96474	chr4	+	4577	6	NNC	ENSMUSG00000041241.13	novel	3944	5	NA	NA	39	756	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	95.6138065344122	25	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCATATTTTGACGGTTG	NA	False	NA	NA	False	NA	NA	NA	138162072	138170332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_138162191_138163490_138163711_138164938_138165027_138165552_138165674_138166261_138169100_138169140
96475	chr2	-	2409	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	127	6	0	2	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	6	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3759	False	NA	NA	False	NA	NA	NA	154734728	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
96476	chr5	-	2237	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	65	536	6	-536	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	1	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTTTTAAATATTAGTTA	6829	False	NA	NA	False	NA	NA	NA	148989785	148984047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
96477	chr14	-	2492	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1817.11680967405	62	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTGGCTATTGCTGTAC	NA	False	NA	NA	False	NA	NA	NA	36857243	36842782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849539_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
96478	chrM	+	2490	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	25	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	3	False	NA	-46	True	NA	NA	NA	1118	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_1525_1618
96479	chr16	+	3931	9	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1315	junction_3	280.466129862413	34	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
96480	chr7	+	3582	23	NIC	ENSMUSG00000033790.12	novel	3905	23	NA	NA	-11	1	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	20.4636848268882	2	4	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCTACCTATTTCATGT	NA	False	NA	NA	False	NA	NA	NA	55443927	55481195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450446_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980_55476070_55479078_55479180_55480589
96482	chrM	+	2167	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-585	0	585	mono-exon	FALSE	NA	NA	NA	NA	NA	3	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATATGATTACTTCTGCC	-3	True	NA	22	True	NA	NA	NA	1093	3260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3300
96483	chr4	-	4692	4	NIC	ENSMUSG00000043085.15	novel	2478	5	NA	NA	-41	639	intron_retention	FALSE	canonical	3	77	junction_1	16.391054470859	49	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCAGGTTGCATGCGTA	NA	False	NA	NA	False	NA	NA	NA	141345333	141340047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141342018_141342255_141344781_141344950_141345024_141345209
96484	chr12	+	3142	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	28	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	22	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	NA	False	NA	NA	NA	86516918	86568396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86567006_86567736
96485	chr12	+	4170	5	FSM	ENSMUSG00000034157.13	ENSMUST00000190588.2	573	5	-124	-3473	23	-6	multi-exon	FALSE	canonical	1	1	junction_2	47.8767950055139	199	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGCAATTTGGTCTATTT	NA	False	NA	NA	False	NA	NA	NA	86994139	87012130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_86994274_86999517_86999706_87006501_87006603_87007045_87007216_87008553
96486	chrX	+	8722	21	NIC	ENSMUSG00000034160.14	novel	3840	23	NA	NA	-2	-5	intron_retention	FALSE	canonical	3	162	junction_1	115.690740770383	553	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATGGCTTGGTGTAG	NA	False	NA	NA	False	NA	NA	NA	100683711	100727952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100683929_100686611_100686763_100687552_100687797_100695745_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
96487	chr14	-	5232	3	Intergenic	novelGene_562	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6660	45	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTTATTGTTGCGACAC	NA	False	NA	NA	False	NA	NA	NA	49846584	49839815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_49840573_49840651_49843317_49844774
96488	chr2	-	5165	28	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39422	1441	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_24	34.4355225402494	119	39	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCCAGAAGGTAGGTACAA	1592	False	NA	NA	False	NA	NA	NA	59880992	59743082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_59743350_59743883_59744540_59747697_59747843_59748782_59748846_59750638_59750883_59752486_59752562_59753884_59754100_59755004_59755260_59756363_59756505_59762448_59762515_59764014_59764060_59765558_59765625_59767029_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
96489	chr12	+	1915	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-69	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	1908.10962997413	3	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAATTAACAGTCTTGAA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763357_24763523
96490	chr5	-	3399	19	ISM	ENSMUSG00000106864.4	ENSMUST00000202639.4	4200	21	5757	370	141	-370	3prime_fragment	FALSE	canonical	3	165	junction_17	141.985349618096	16	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATACCTGTAATCCCAGC	NA	False	NA	NA	False	NA	NA	NA	31331704	31314234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575
96491	chr15	-	2778	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	272	-928	-46	-6	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	3	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	712	False	NA	NA	False	NA	NA	NA	36793809	36771019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
96492	chr8	-	6099	7	FSM	ENSMUSG00000031652.12	ENSMUST00000034074.8	6469	7	371	-1	371	1	multi-exon	FALSE	canonical	3	315	junction_2	32.4790530786981	198	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGGAGGGTGGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	87611515	87567765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_87571670_87573442_87573551_87575074_87575183_87578252_87578350_87579786_87579918_87587053_87588739_87611449
96493	chr3	+	1168	4	NNC	ENSMUSG00000027940.19	novel	655	4	NA	NA	1	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1688.34639679053	32	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTTTGAAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	89986972	90007911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994827_90007140
96494	chr13	+	2938	6	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	24	1319	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	96.6527806118375	2	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGACTTAGCTCCATT	NA	False	NA	NA	False	NA	NA	NA	66261317	66271969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66270241_66270322_66270813_66270980
96495	chr2	+	2902	6	NNC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	250	-1386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	157.225188821639	4	72	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCTCAGATCTACAAC	NA	False	NA	NA	False	NA	NA	NA	172212903	172222982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219679_172220944
96496	chr15	-	5313	4	NIC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	-2	-6	intron_retention	FALSE	canonical	3	2867	junction_2	219.880775775318	10	119	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCTGCACTCCGCCTCT	NA	False	NA	NA	False	NA	NA	NA	75781157	75767346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75767441_75767580_75772612_75772980_75773105_75781093
96497	chr15	+	3386	17	FSM	ENSMUSG00000022394.15	ENSMUST00000172748.8	3368	17	-21	3	1	-3	multi-exon	FALSE	canonical	3	9	junction_16	166.366864470513	6	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGATGATATCAGATG	NA	False	NA	NA	False	NA	NA	NA	81548135	81572513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571192
96498	chr16	+	1546	6	Genic_Genomic	ENSMUSG00000086083.2	novel	869	2	NA	NA	-9643	-400	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTTGAAAGCCTGCACGT	NA	False	NA	NA	False	NA	NA	NA	33776965	33787282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_33777304_33779421_33779536_33780544_33780721_33781936_33782612_33784139_33784298_33787197
96499	chr17	-	666	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4724	3	1189	-3	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	9	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45879473	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
96500	chr17	+	5112	21	NNC	ENSMUSG00000046201.10	novel	4866	20	NA	NA	6	60039	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	37.0789360688788	56	53	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTGCAAGTCCTTTC	9722	False	NA	NA	False	NA	NA	NA	3165529	3309173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_3165694_3195349_3195434_3198810_3198856_3209437_3209600_3213233_3213388_3214421_3214553_3218237_3218415_3219604_3219682_3221377_3221496_3227367_3227500_3227885_3227999_3228429_3228624_3235338_3235440_3236035_3236150_3237863_3238021_3240421_3240556_3242091_3242237_3243288_3243358_3246052_3246269_3247034_3248499_3308012
96501	chr4	-	2466	9	Antisense	novelGene_ENSMUSG00000095096.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	313	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACATCGAAAATGATGGGAT	NA	False	NA	NA	False	NA	NA	NA	146552848	146093411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146093468_146094926_146095019_146209449_146209546_146250676_146250734_146253155_146253303_146253968_146254045_146391389_146392191_146392526_146393458_146552638
96502	chr13	-	2530	21	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-23	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	379.87167570115	1	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTACTTGGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	6698784	6631210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653494_6655011_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
96503	chr13	+	2026	17	NNC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	66909	39132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	118	41	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTCCTTCTTACTGAAA	NA	False	NA	NA	False	NA	NA	NA	113004305	113043560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_113004529_113005543_113005649_113009431_113009595_113011128_113011187_113012969_113013076_113017512_113017675_113019631_113019822_113023287_113023366_113023998_113024099_113027816_113027878_113028418_113028582_113032002_113032156_113035297_113035425_113038006_113038108_113039931_113040046_113041521_113041599_113043515
96504	chr4	+	2301	4	Fusion	ENSMUSG00000078498.6_ENSMUSG00000086147.3	novel	2295	5	NA	NA	17062	182328	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	99	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147073520	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147074604_147204563_147204734_147417352_147418066_147600184
96505	chr2	-	8312	30	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	191	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCGGGGGGCGGGCCCA	NA	False	NA	NA	False	NA	NA	NA	52006356	51962848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51962879_51963148_51963264_51964256_51966186_51966988_51967120_51967203_51967298_51968340_51968533_51971237_51971319_51972671_51972814_51975036_51975189_51978657_51978773_51979530_51979696_51980180_51980295_51982051_51982115_51982289_51982390_51983509_51983582_51984602_51984675_51985833_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993710_51994557_51994599_51995444_51995650_51996912_51997013_51997649_51997768_51998449_51998603_51999202_51999288_51999362_51999413_51999920_52003011_52006257
96506	chr2	-	2818	14	Antisense	novelGene_ENSMUSG00000039678.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	396	15	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGCCCAAGGGTCACGTG	6842	False	NA	NA	False	NA	NA	NA	30042017	30023744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30023924_30024807_30024881_30025418_30025563_30026682_30026724_30027130_30027193_30027291_30027392_30030484_30030568_30032271_30032434_30036663_30036873_30037371_30037535_30038631_30038796_30038942_30039004_30039713_30040808_30041734
96507	chr4	+	2950	7	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	40.9783140480696	1	37	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145311724	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145312083_145314001_145314095_145343640_145343746_145347127_145347255_145348721_145349913_145350660_145351517_145351690
96508	chr5	-	1081	3	NNC	ENSMUSG00000105471.2	novel	665	2	NA	NA	6	572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7	29	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGCAAAGCTTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	109944158	109916700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_109917112_109917261_109917822_109944048
96509	chr11	+	1068	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	4	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAAGGACGCGGGCTCT	NA	False	NA	NA	False	NA	NA	NA	33102509	33113072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102739_33106023_33106104_33106662_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
96511	chr5	-	5097	3	Antisense	novelGene_ENSMUSG00000063430.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	15	102	46	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTCCTTAACCTGGAAA	NA	False	NA	NA	False	NA	NA	NA	113734501	113706907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_113711281_113711324_113711932_113734384
96512	chr4	+	2125	6	NIC	ENSMUSG00000029003.12	novel	1535	8	NA	NA	-221	-2	intron_retention	FALSE	canonical	3	625	junction_4	27.9470928720681	13	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAACAGGATGAACATGTG	NA	False	NA	NA	False	NA	NA	NA	148224959	148230151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148229185_148229560_148229654_148229828
96513	chr2	+	2223	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	253.330688034435	39	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAATTTAAAAACACCAAG	NA	False	NA	NA	False	NA	NA	NA	154713335	154730282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102
96514	chr14	+	462	1	Antisense	novelGene_ENSMUSG00000063556.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTTCGGCTTTGGGAG	NA	False	NA	NA	False	NA	NA	NA	77489238	77489700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_77489200_77489700
96515	chr12	+	5187	2	Intergenic	novelGene_4374	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	61	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605029	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68607260_68607315
96516	chrM	-	1471	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1397	-5	1397	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAAGTGCACCTGGTTGA	9245	False	NA	NA	False	NA	NA	NA	6943	5472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5500_6900
96517	chr8	+	3245	17	NNC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-50604	-2779	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCTCGACAAAATGGCG	NA	False	NA	NA	False	NA	NA	NA	96482767	96534050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96482922_96483969_96484120_96486725_96486879_96487129_96488070_96489616_96489858_96491083_96491213_96491607_96491779_96496128_96496242_96496373_96496499_96497169_96497339_96498598_96498803_96500059_96500113_96500196_96500268_96501257_96501357_96501906_96502015_96515257_96515535_96533962
96518	chrM	+	859	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	519	0	519	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	81	False	NA	NA	False	NA	NA	NA	10685	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10700_11500
96519	chr19	+	1393	10	NNC	ENSMUSG00000025157.9	novel	1561	10	NA	NA	16	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	194.577478300363	1	32	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGTAAAAAGATATGTAGC	8333	False	NA	NA	False	NA	NA	NA	41926122	41932529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41926290_41926461_41926657_41926807_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41930008_41930079_41930374_41930446_41932020
96520	chr5	+	1268	1	FSM	ENSMUSG00000104802.2	ENSMUST00000200248.2	1257	1	-68	57	-68	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	1	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTGATATGGTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	87144949	87146217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_87144900_87146200
96521	chr12	-	2707	3	Fusion	ENSMUSG00000113691.2_ENSMUSG00000071362.4	novel	1740	3	NA	NA	-2	-531	multi-exon	FALSE	non_canonical	0	0	junction_1	4	5	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTATAGTCTCCATTATTT	NA	False	NA	NA	False	NA	NA	NA	23834134	23829809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_23832327_23833744_23833806_23834005
96522	chr16	+	2732	11	NNC	ENSMUSG00000022841.16	novel	2937	12	NA	NA	-42	-250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	839.977833040849	4817	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGAGGTTTCAGCTTTT	1311	False	NA	NA	False	NA	NA	NA	20354185	20363409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359717_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
96523	chr4	+	1301	10	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5012.43323036715	23	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150321710	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331109_150332508_150332577_150332942
96524	chr17	-	1161	6	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	142	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4572.36225161568	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGAAGATGCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	45880520	45878724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45879832_45879872_45880053_45880165_45880314_45880395
96525	chr6	+	7202	4	Antisense	novelGene_ENSMUSG00000107953.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	39	20	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTAGCAGTGTTCTCCT	NA	False	NA	NA	False	NA	NA	NA	44391277	44707483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_44393478_44470176_44470560_44639711_44641429_44704581
96526	chr17	+	3536	7	NNC	ENSMUSG00000024180.15	novel	3464	13	NA	NA	-399	0	intron_retention	FALSE	non_canonical	0	0	junction_1	154.171981890355	11	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTGGTCTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	26336403	26342228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26336972_26337070_26337404_26337835_26337927_26338006_26338510_26339257_26339437_26339512_26339660_26340513
96528	chr8	+	2082	1	FSM	ENSMUSG00000074461.3	ENSMUST00000098916.3	2130	1	37	11	37	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	72	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTTTTTTCAATAAGACT	4344	False	NA	NA	False	NA	NA	NA	14140497	14142579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_14140500_14142600
96529	chr16	+	2629	3	Intergenic	novelGene_3846	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_1	0	14	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGATATCTCTAATCTTGT	NA	False	NA	NA	False	NA	NA	NA	73294181	73308346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_73294348_73305005_73305187_73306064
96530	chr7	+	5516	3	Antisense	novelGene_ENSMUSG00000097415.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	167	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCAATTTCTCCCCAATTC	NA	False	NA	NA	False	NA	NA	NA	75424614	75431865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_75426124_75426563_75430503_75431797
96531	chr11	-	962	9	NNC	ENSMUSG00000057113.14	novel	1192	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6557.56518148123	162	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113076	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102728_33106679_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
96532	chr6	-	1803	3	NIC	ENSMUSG00000057841.6	novel	517	4	NA	NA	4	0	intron_retention	FALSE	canonical	3	14202	junction_2	1877	19	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	115785704	115782472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_115784129_115784762_115784864_115785658
96533	chr2	+	664	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11303	214	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCCCCCCCCCACTTCTC	NA	False	NA	NA	False	NA	NA	NA	11413731	11426245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414036_11425728_11425956_11426112
96534	chr15	-	3412	19	NNC	ENSMUSG00000033075.18	novel	3806	19	NA	NA	-4930	126	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	70.5818848511132	1	87	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGTGGCCGGTAGT	8148	False	NA	NA	False	NA	NA	NA	97996555	97939487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945147_97946062_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97996468
96535	chr19	+	6387	40	NIC	ENSMUSG00000025224.17	novel	6450	40	NA	NA	-7	-18	combination_of_known_junctions	FALSE	canonical	3	63	junction_11	14.1633654350608	120	26	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTTAGTACCAACTCAT	9083	False	NA	NA	False	NA	NA	NA	46140979	46274930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46141232_46151958_46152065_46159095_46159163_46234527_46234660_46240552_46240672_46242425_46242535_46242995_46243057_46244091_46244147_46247542_46247691_46248011_46248236_46249151_46249318_46250059_46250272_46250872_46250972_46253217_46253413_46253616_46253807_46254025_46254167_46254463_46254553_46255641_46255845_46256431_46256556_46256829_46256956_46257217_46257301_46258183_46258421_46258696_46258791_46259112_46259290_46259993_46260059_46260145_46260270_46260424_46260497_46260613_46260709_46260939_46261094_46267648_46267875_46268350_46268512_46268615_46268863_46268976_46269171_46271473_46271625_46271758_46271890_46272060_46272163_46272443_46272558_46272688_46272870_46273143_46273273_46274098
96536	chrM	-	1242	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	2	-1175	2	1175	mono-exon	FALSE	NA	NA	NA	NA	NA	5	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTCCTGCTTCTACTATT	9252	False	NA	NA	False	NA	NA	NA	6936	5694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5700_6900
96537	chr9	-	1969	2	NNC	ENSMUSG00000058587.10	novel	3667	10	NA	NA	3244	-93	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATGTTTTATAA	3112	False	NA	NA	False	NA	NA	NA	75407102	75405081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_75406260_75406311
96538	chr9	+	1999	9	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	64.5716656127128	22	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTATGGTCTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	108174086	108179496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176051_108176590_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
96539	chr13	+	4363	4	Antisense	novelGene_ENSMUSG00000074830.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCACCCGGAAGATCCC	NA	False	NA	NA	False	NA	NA	NA	66817021	66828879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66821064_66821262_66821398_66824031_66824103_66828764
96540	chr4	-	2393	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	33	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.152774954745	27	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137523662	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469670_137469754_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
96541	chrX	+	8808	22	NIC	ENSMUSG00000034160.14	novel	3840	23	NA	NA	-147	-5	intron_retention	FALSE	canonical	3	98	junction_1	134.119671069536	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATGGCTTGGTGTAG	NA	False	NA	NA	False	NA	NA	NA	100683518	100727952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
96542	chr13	-	2879	14	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	-40	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	3023.19675824338	1	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	5834	False	NA	NA	False	NA	NA	NA	58549247	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58548923
96543	chr5	+	3145	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	-216	intron_retention	FALSE	non_canonical	0	0	junction_2	823.955534129253	1	18	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208609	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228888_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108254860
96544	chr9	+	2452	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	-58	0	-58	0	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	736	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2109	False	NA	NA	False	NA	NA	NA	40712221	40716496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
96545	chr2	-	4125	28	FSM	ENSMUSG00000027185.16	ENSMUST00000143017.8	4107	28	-16	-2	-9	-2	multi-exon	FALSE	canonical	2	8	junction_15	70.0248828986219	69	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCCTGCAGTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	103591558	103551602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565262_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
96546	chr16	+	2392	7	ISM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	74	-680	42	680	intron_retention	FALSE	canonical	3	531	junction_3	38.4610192272644	3	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAGTAGGTTCACTTCCA	5478	False	NA	NA	False	NA	NA	NA	35590818	35646598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058
96547	chr7	+	3182	7	NNC	ENSMUSG00000030982.20	novel	5097	31	NA	NA	16844	12688	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	23	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGCCGCGCAGCCGCGA	NA	False	NA	NA	False	NA	NA	NA	118441770	118454877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_118442789_118442885_118442975_118443922_118445320_118447672_118447796_118449841_118449912_118452110_118452564_118454845
96548	chr5	+	1094	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	110	-202	110	202	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACACCGTCAATAAGACAAA	NA	False	NA	NA	False	NA	NA	NA	96009682	96010776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009700_96010800
96549	chr13	+	4255	7	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-15	1318	intron_retention	FALSE	canonical	0	0	junction_1	51.1221304546497	84	44	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66261278	66271968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66263982_66264140_66264730_66264842_66267450_66267578_66267777_66269413_66269670_66270190_66270358
96550	chr3	-	4380	7	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	-5	-28	intron_retention	FALSE	canonical	3	88	junction_6	259.5673751114	45	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTATGCTTCCTGTAACAA	NA	False	NA	NA	False	NA	NA	NA	10416382	10405042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411298_10412224_10412472_10413569_10416118_10416301
96551	chr16	+	3248	9	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	1315	junction_3	258.38558275376	817	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
96552	chr4	+	6337	4	FSM	ENSMUSG00000078498.6	ENSMUST00000148762.4	2800	4	-46	-3491	-46	3491	multi-exon	FALSE	canonical	2	12	junction_1	71.5976411777806	148	149	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCCCAATTCGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	147390084	147421682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724
96553	chrM	+	2337	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	280	-1035	280	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	54	False	NA	60	True	NA	NA	NA	1373	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1400_3700
96554	chr5	+	9823	52	NNC	ENSMUSG00000045482.17	novel	12479	71	NA	NA	3358	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	35.7408008344897	194	101	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGTGCCCTATTTTTG	NA	False	NA	NA	False	NA	NA	NA	144731626	144796588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_144731668_144733770_144733972_144735057_144735210_144737603_144737804_144739677_144739896_144739972_144740171_144740848_144741110_144741509_144741672_144741793_144741891_144742497_144742620_144742863_144743035_144744132_144744202_144748702_144748825_144750243_144750364_144751218_144751384_144751480_144751663_144752160_144752360_144752741_144752871_144753121_144753389_144754406_144754614_144754739_144754904_144755001_144755131_144756511_144756623_144757057_144757205_144758582_144758797_144759500_144759627_144761266_144761414_144762028_144762232_144762683_144762806_144763329_144763544_144765276_144765457_144767715_144767863_144769257_144769378_144769715_144770004_144770106_144770245_144770966_144771080_144772797_144772934_144773941_144774134_144776210_144776440_144777147_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144793696_144793901_144794194_144794390_144795483
96555	chrM	+	520	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	440	-3	440	3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	14	False	NA	-28	True	NA	NA	NA	3190	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3200_3700
96556	chr15	+	3012	11	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	327.84783055558	5	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-21	True	NA	NA	NA	101982371	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998501_102003411_102003463_102003840
96557	chr2	+	5730	33	Antisense	novelGene_ENSMUSG00000087181.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	85	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTAATTCCTGCCAGAA	NA	False	NA	NA	False	NA	NA	NA	59733615	59955898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_59733650_59737259_59737394_59737888_59738091_59742023_59742187_59742745_59742901_59743073_59743352_59743885_59744539_59747696_59747845_59748783_59748845_59750637_59750882_59752485_59752561_59753882_59754092_59754996_59755260_59756363_59756504_59762447_59762517_59764016_59764059_59765557_59765627_59767031_59767098_59773104_59773170_59773283_59773375_59778430_59778647_59787977_59788083_59788775_59788833_59790160_59790450_59792364_59792978_59798973_59799365_59799558_59799763_59807702_59807896_59808883_59809050_59831847_59831903_59836387_59836534_59907213_59907254_59955804
96558	chr1	+	3161	1	FSM	ENSMUSG00000025971.7	ENSMUST00000185709.2	4874	1	29	1684	29	-1684	mono-exon	FALSE	NA	NA	NA	NA	NA	3	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTGATCTATTGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	57445946	57449107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_57445900_57449100
96559	chr3	+	3778	8	Intergenic	novelGene_3158	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	53	14	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGCAGCAATAGACCAGCAG	5065	False	NA	NA	False	NA	NA	NA	95679559	95726641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_95681685_95683826_95684109_95687725_95687903_95691525_95691653_95692365_95692419_95694595_95694696_95697410_95697542_95725858
96560	chr17	-	353	1	Intergenic	novelGene_14	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTTTTAAAGAATTACT	NA	False	NA	NA	False	NA	NA	NA	13207605	13207252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_13207300_13207600
96562	chr5	-	4289	15	NNC	ENSMUSG00000002221.12	novel	5850	21	NA	NA	-6438	-1969	intron_retention	FALSE	canonical	0	0	junction_14	209.32227861967	2	62	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGGGTGATTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	27977173	27947046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_27949174_27949254_27949331_27949418_27949554_27953811_27953913_27955960_27956130_27957741_27957845_27959482_27959554_27961950_27961995_27963428_27963614_27964367_27964490_27964970_27965109_27966574_27966671_27970135_27970231_27970588_27971244_27977001
96563	chr4	+	5180	1	Intergenic	novelGene_1874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	69	62	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATTTGCAGCAAGACCC	NA	False	NA	NA	False	NA	NA	NA	66820645	66825825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66820600_66825800
96564	chr1	-	2819	16	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	43	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	666.335230946106	2	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTCATGCTTTGTGCTTT	NA	False	NA	NA	False	NA	NA	NA	20890441	20873231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20880231_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
96565	chr6	+	2143	8	ISM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	702	11	361	-11	3prime_fragment	FALSE	canonical	3	738	junction_7	88.0727899327063	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATATTTCATTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	106746828	106759424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
96566	chr13	+	4831	33	NNC	ENSMUSG00000021666.17	novel	3074	20	NA	NA	0	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	100.107515444334	171	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	NA	NA	NA	97274484	97334865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107_97313100_97313306_97313409_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
96567	chr13	-	2846	6	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	-3	-339	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	33.8384396803399	59	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	7278	False	NA	NA	False	NA	NA	NA	65496414	65484374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65486220_65486639_65487225_65488362_65488424_65488791_65488919_65491542_65491654_65496297
96568	chr12	-	3371	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	107	-197	1	197	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	435	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTCTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	110662722	110656841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
96569	chr4	+	4332	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1901	multi-exon	FALSE	non_canonical	0	0	junction_2	77.1061477749431	6	109	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206906	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146209452_146209546_146211490_146211604_146250680_146250737_146251579_146251707_146253158_146253314_146253561_146254863_146304057_146305533_146392973_146393411_146552589
96570	chr13	+	6250	26	NNC	ENSMUSG00000057649.7	novel	3893	14	NA	NA	-25348	1	intron_retention	FALSE	non_canonical	0	0	junction_1	81.5774478639777	11	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGCTGAGTACCTGTTT	NA	False	NA	NA	False	NA	NA	NA	74060581	74108933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_74061458_74062605_74062679_74063578_74063690_74066529_74066686_74068115_74068223_74068468_74068554_74069291_74069352_74076025_74076105_74077778_74077869_74078278_74078337_74080978_74081109_74084227_74084392_74085608_74086065_74086552_74086768_74086983_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
96571	chr5	-	3482	3	Antisense	novelGene_ENSMUSG00000029283.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	44	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAACCAGCATTAGGAT	NA	False	NA	NA	False	NA	NA	NA	107132298	107125244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_107125632_107125684_107127310_107130828
96572	chr4	+	3511	7	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	12	178551	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.1718143648788	2	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146206912	146393555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207142_146365171_146365259_146373510_146373598_146375377_146375458_146384326_146384431_146388486_146388614_146390758
96573	chr8	-	5073	7	Antisense	novelGene_ENSMUSG00000110458.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	129	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGGAAATAACAGAGATAAA	NA	False	NA	NA	False	NA	NA	NA	20727058	20697586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20697780_20711889_20712264_20717196_20717495_20721118_20721238_20722098_20722320_20723149_20725000_20725040
96574	chr15	+	5012	14	Intergenic	novelGene_3297	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	241	14	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTCCTGTGCGCCCGGCCC	NA	False	NA	NA	False	NA	NA	NA	58813084	58953879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_58815980_58817165_58817374_58817694_58817873_58819176_58819370_58823318_58823532_58825364_58825459_58826952_58827062_58828280_58828442_58840689_58840763_58842825_58842918_58844324_58844407_58926863_58926940_58930208_58930271_58953303
96575	chr4	+	7979	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	-49	2654	multi-exon	TRUE	non_canonical	0	0	junction_1	3.8477987935384	138	70	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGTTGCAAACATGGTT	NA	False	NA	NA	False	NA	NA	NA	147216445	147420845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216858_147219028_147219122_147224494_147224577_147249797_147251884_147260303_147260362_147261203_147261331_147415724
96576	chr2	+	4605	5	NIC	ENSMUSG00000078887.11	novel	599	6	NA	NA	-5	2787	combination_of_known_junctions	FALSE	canonical	3	44	junction_4	79.6649232724164	14	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175661073	175675828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349_175670411_175671567
96577	chr14	-	4415	4	NNC	ENSMUSG00000034248.8	novel	4174	4	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	82.7257853124137	110	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTGGGGTCTTTGTGG	668	False	NA	NA	False	NA	NA	NA	69522435	69479296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_69482804_69485029_69485087_69486475_69487072_69522180
96578	chr5	+	998	7	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	32	-1199	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5691.21391317841	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCGTTTAGAATCAGAATAAA	507	False	NA	NA	False	NA	NA	NA	129097297	129100188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097309_129097572_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
96580	chr7	-	1301	8	ISM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	1363	0	-27	0	3prime_fragment	FALSE	canonical	3	19253	junction_4	557.41824695718	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126396950	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815
96581	chrX	-	3548	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	6	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	324.35561037767	2	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256251	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243456_93244518_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
96582	chr4	+	1120	1	Intergenic	novelGene_2103	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCCAGAATATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	146500227	146501347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146500200_146501300
96583	chr2	-	3814	1	Intergenic	novelGene_2567	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCCAAACCTTATTCGAA	NA	False	NA	NA	False	NA	NA	NA	16037674	16033860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_16033900_16037700
96585	chrM	+	1647	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-269	0	-269	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	20	False	NA	NA	False	NA	NA	NA	9897	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
96586	chr9	+	4979	18	NIC	ENSMUSG00000032512.8	novel	3845	19	NA	NA	2	-5	intron_retention	FALSE	canonical	3	235	junction_16	24.4360616152938	7	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACACTTCAGTGTGCTGGA	NA	False	NA	NA	False	NA	NA	NA	119723962	119755647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
96587	chrX	-	4217	17	Intergenic	novelGene_4080	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	6	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCCAGAGAATCCTGATA	NA	False	NA	NA	False	NA	NA	NA	150070534	149952501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_149952707_149981015_149981668_149990591_149990771_149992274_149992490_149993866_149994027_150009451_150009538_150013225_150013448_150015939_150016235_150019528_150019626_150019882_150020031_150049261_150049327_150057911_150058058_150059844_150059964_150067263_150067422_150067500_150067552_150068772_150068913_150069255
96588	chrX	+	3284	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	5622	-476	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	704.706513971124	11	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20534758	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544839_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
96589	chr8	+	4828	3	NNC	ENSMUSG00000003812.14	novel	590	4	NA	NA	2	-744	intron_retention	FALSE	non_canonical	0	0	junction_2	44.5	12	120	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGCCACACTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	85635320	85640406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85637821_85637964
96590	chr17	+	1822	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-2	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1039.19561231808	6	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCTGACCACCTGGGTT	NA	False	NA	NA	False	NA	NA	NA	13135266	13143435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138792_13139248_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
96591	chr11	-	3980	2	Intergenic	novelGene_2358	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	85	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTAAATCAGGGACTG	NA	False	NA	NA	False	NA	NA	NA	57450859	57446784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450427_57450521
96592	chr5	+	1807	1	Antisense	novelGene_ENSMUSG00000100801.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGATTCTTGGCCGCA	NA	False	NA	NA	False	NA	NA	NA	5831570	5833377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_5831600_5833400
96594	chr2	-	4226	6	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5542	2855	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.2320512433443	3	33	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCCCCCCAACTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	177021642	177003457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177005754_177006191_177007703_177008856_177008918_177009124_177009252_177017944_177018063_177021529
96596	chr5	-	6027	5	Genic_Genomic	ENSMUSG00000043940.16	novel	14274	67	NA	NA	4436	-1284	multi-exon	TRUE	non_canonical	0	0	junction_1	0	42	108	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTCTCTCTCTCCACCTT	NA	False	NA	NA	False	NA	NA	NA	101994943	101985307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_101985555_101985872_101985904_101986046_101986686_101986857_101989937_101992912
96597	chr18	-	4749	28	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	10996	-84	at_least_one_novel_splicesite	FALSE	canonical	3	164	junction_9	17.3831193836484	113	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTAGATGCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	21018139	20950363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970247_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686_20985912_20988001_20988134_20993489_20993596_20995951_20996053_20996524_20996676_20998083_20998200_20999006_20999261_21000816_21000911_21003655_21003810_21006939_21007115_21007671_21007762_21018119
96598	chr14	-	2543	2	NNC	ENSMUSG00000115313.2	novel	429	3	NA	NA	621	-13761	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	0	6	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGGGTCTTGATACAAC	NA	False	NA	NA	False	NA	NA	NA	90322707	90315959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_90318195_90322399
96599	chr14	+	1816	5	NIC	ENSMUSG00000025290.18	novel	714	6	NA	NA	-7	-3	combination_of_known_junctions	FALSE	canonical	3	776	junction_1	5312.66281515212	6	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACATCTTGGGACTGGA	NA	False	NA	NA	False	NA	NA	NA	24540845	24547024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545842
96600	chr9	+	3697	19	NNC	ENSMUSG00000032512.8	novel	3845	19	NA	NA	0	-26	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	64.7542362406593	1	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAATAAAGCTTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	119723960	119755626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738521_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
96601	chrX	+	8201	26	FSM	ENSMUSG00000025332.15	ENSMUST00000112588.9	6449	26	2	-1754	2	1754	multi-exon	FALSE	canonical	3	451	junction_24	43.2417205948144	309	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGGTTTAGTGAGTTTTT	NA	False	NA	NA	False	NA	NA	NA	151016226	151059285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_151016707_151020628_151020707_151022625_151022749_151023021_151023193_151025032_151025168_151027868_151027993_151028097_151028280_151029250_151029410_151031423_151031544_151031657_151031817_151036419_151036602_151036694_151036858_151044932_151045053_151045158_151045354_151049552_151049735_151049812_151049938_151050078_151050227_151050890_151050997_151051760_151052120_151052710_151052850_151053347_151053528_151053689_151053828_151054007_151054590_151054855_151054926_151055070_151055271_151055704
96602	chr16	-	1063	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	12	10	12	8	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	567	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGGACCAGCTGACA	7145	False	NA	NA	False	NA	NA	NA	18066584	18057657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
96603	chr5	-	5570	31	NNC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	1	1367	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	111.303409152141	5	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGAAGTGGACTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	124563654	124511227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526714_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
96604	chr16	+	2544	5	Intergenic	novelGene_3585	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	4	junction_4	16.872685026397	31	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCCTGCGTGTGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	8970686	9059894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9038336_9038565_9058024
96605	chr11	-	5836	18	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-5574	-9	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_4	14.2297023533784	2	25	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTCCGTCCATCTGTGT	9527	False	NA	NA	False	NA	NA	NA	106963605	106923917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508
96606	chr10	-	5435	7	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-20	-8763	combination_of_known_junctions	FALSE	canonical	3	63	junction_6	67.5584109411174	2	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCTTGAGGCCCTATT	2783	False	NA	NA	False	NA	NA	NA	62723311	62657889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62722950
96608	chrM	+	1647	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-269	0	-269	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	20	False	NA	NA	False	NA	NA	NA	9897	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
96609	chrUn_MU069435v1	+	538	1	Intergenic	novelGene_4772	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1651	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGCTGCGATCTATTGAAA	NA	False	NA	NA	False	NA	NA	NA	4	542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_500
96610	chr10	+	2636	11	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	23	2	intron_retention	FALSE	canonical	3	18	junction_7	510.165081125708	8	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	32	False	NA	NA	False	NA	NA	NA	79694628	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
96611	chr16	-	564	1	Intergenic	novelGene_3777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96612	chr1	-	8837	49	NNC	ENSMUSG00000006014.17	novel	3821	13	NA	NA	15671	56008	intron_retention	TRUE	non_canonical	0	0	junction_1	0	9	37	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCGGTCTCTCGCGCGCCT	NA	False	NA	NA	False	NA	NA	NA	150325678	150269154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_150269409_150270948_150271051_150274346_150274423_150278003_150278101_150279346_150279451_150279623_150279789_150282210_150282304_150283077_150283154_150283233_150283327_150284492_150284634_150284951_150285044_150285728_150285926_150287648_150287758_150288639_150288869_150289394_150289556_150290163_150290299_150290414_150290564_150291816_150291983_150293132_150293266_150293693_150293838_150295586_150295753_150297384_150297552_150298276_150298432_150298807_150298925_150299236_150299439_150299545_150299730_150300410_150300557_150301379_150301524_150302611_150302744_150303868_150303999_150305082_150305295_150306309_150306453_150306909_150307099_150308160_150308366_150308567_150308632_150309428_150309636_150311391_150311666_150312467_150312620_150313154_150313238_150314832_150315028_150315817_150316279_150317806_150317993_150318932_150319003_150319084_150319181_150320118_150320224_150321616_150321713_150321833_150323378_150324889_150324988_150325480
96613	chr4	+	2650	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	82.8322853723112	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACAAATTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	146033868	146063186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061242_146061430
96614	chr13	-	1446	3	ISM	ENSMUSG00000021196.15	ENSMUST00000142972.2	550	6	1568	-291	1568	5	intron_retention	FALSE	canonical	3	1227	junction_2	94.5	5	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATGGTACTTGGTTTAT	5236	False	NA	NA	False	NA	NA	NA	6635563	6631212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_6631629_6632438_6632542_6634636
96615	chrX	-	588	1	FSM	ENSMUSG00000095597.3	ENSMUST00000187973.2	582	1	40	-46	40	12	mono-exon	FALSE	NA	NA	NA	NA	NA	3	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	151693076	151692488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693100
96616	chr11	-	3934	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9028	1328	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	508.337716852684	52	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAATGATAAAAAAAA	396	False	NA	NA	False	NA	NA	NA	106615248	106543714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106543809_106544430_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106605990_106615208
96618	chr13	-	723	6	ISM	ENSMUSG00000021156.18	ENSMUST00000154994.8	867	8	29021	556	-5	-551	internal_fragment	FALSE	canonical	3	84	junction_4	37.4539717520052	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAATATCTGCAACAGTTC	NA	False	NA	NA	False	NA	NA	NA	9785459	9745724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367
96619	chr4	-	1505	2	Genic_Genomic	ENSMUSG00000081260.2	novel	339	1	NA	NA	-68	198645	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10357	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACATCATGAAGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	147033023	146833971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_146835025_147032571
96620	chrX	+	1306	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-71	-25	71	mono-exon	FALSE	NA	NA	NA	NA	NA	171	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	13068784	13070090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
96621	chr6	+	938	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	5	0	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	42	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTCTGGTTGCATAT	NA	False	NA	NA	False	NA	NA	NA	148256153	148257091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148257100
96622	chr16	+	3001	9	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	1	-4	intron_retention	FALSE	non_canonical	0	0	junction_6	830.841882896499	1	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6069	False	NA	NA	False	NA	NA	NA	22926523	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929482_22929888_22930014_22930252_22930343_22930566
96623	chr5	-	2913	19	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-1	-15	combination_of_known_junctions	FALSE	canonical	3	47	junction_4	64.898900483372	66	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTTACCATCATGCTG	NA	False	NA	NA	False	NA	NA	NA	114911557	114867650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
96625	chr6	-	2570	10	NIC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_5	113.505859967288	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	120341307	120301283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120341034
96626	chr16	-	2462	2	NNC	ENSMUSG00000005981.12	novel	2320	18	NA	NA	14	-5406	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	0	19	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCTTCCCATTTATATC	NA	False	NA	NA	False	NA	NA	NA	3895677	3888599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_3890941_3895556
96627	chr1	-	1098	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGCTGGAGGAGGCGGTGGG	9070	False	NA	NA	False	NA	NA	NA	86458409	86454541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454673_86456893_86456967_86457177_86457274_86457451_86457525_86457684
96628	chr1	+	3670	31	NIC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-6	-468	combination_of_known_splicesites	FALSE	canonical	1	29	junction_1	205.033970085176	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCCTCTCTCTGCTATT	3060	False	NA	NA	False	NA	NA	NA	171910391	171949424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_171910517_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
96629	chr3	+	1331	4	NNC	ENSMUSG00000038374.11	novel	2620	5	NA	NA	-355	-892	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2117.54910739331	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAGATGCTATTGGCCC	9568	False	NA	NA	False	NA	NA	NA	96538181	96540215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96538319_96538747_96538885_96539021_96539844_96539980
96630	chr3	+	5287	4	Intergenic	novelGene_3131	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	77	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	66577371	66814327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_66578251_66743771_66745560_66780998_66781026_66811734
96631	chr19	+	3114	20	FSM	ENSMUSG00000032648.15	ENSMUST00000035269.15	2874	20	-245	5	-245	-5	multi-exon	TRUE	canonical	1	1	junction_8	7.04005162408672	70	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTACTCTTCTCTGTTGCA	NA	False	NA	NA	False	NA	NA	NA	6434183	6448484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_6434752_6435714_6435817_6435895_6435975_6436053_6436158_6436403_6436536_6438092_6438205_6438296_6438380_6438766_6438911_6439189_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
96632	chrX	+	1461	2	Genic_Genomic	ENSMUSG00000081205.5	novel	1068	1	NA	NA	-55	742	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAATAATA	NA	False	NA	NA	False	NA	NA	NA	79500292	79502157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_79500994_79501397
96633	chr9	+	2239	10	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	18	-1170	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	108.827079963276	3	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAAGCCACATCTCCCT	NA	False	NA	NA	False	NA	NA	NA	109760885	109896650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_109761009_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552
96634	chrX	-	3321	22	FSM	ENSMUSG00000031389.18	ENSMUST00000064376.13	3353	22	-2	34	-2	-28	multi-exon	FALSE	canonical	3	19	junction_18	9.77989051592099	60	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACAGTCTTGGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	72954938	72937991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72943790_72943883_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72954768
96635	chr19	+	3390	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	4	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1486	False	NA	NA	False	NA	NA	NA	44282531	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44293231_44294876
96637	chr13	+	3191	7	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	63244	3045	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4.47213595499958	19	40	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTTCTGTTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	61866360	61894629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61866450_61887645_61887749_61889663_61889791_61889975_61890037_61891398_61891831_61892166_61893360_61893443
96638	chr11	-	4034	4	NIC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	1000	-17	intron_retention	FALSE	canonical	3	195	junction_2	35.6931365951495	2	98	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTACCAATGGCTGT	8836	False	NA	NA	False	NA	NA	NA	94540357	94535838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_94536432_94536641_94538575_94538769_94538889_94538968
96639	chr11	+	11790	19	NNC	ENSMUSG00000000686.12	novel	442	2	NA	NA	10557	46888	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	178	52	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGGAAAATAAGAGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	77420000	77476321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_77429157_77430881_77431063_77432450_77432664_77436114_77436354_77440096_77440299_77441694_77441826_77444497_77444740_77446392_77446524_77450566_77450771_77451078_77451248_77454489_77454577_77456575_77456668_77462434_77462524_77464520_77464636_77466398_77466496_77468148_77468195_77469551_77469658_77470604_77470671_77476097
96640	chr10	+	2939	3	FSM	ENSMUSG00000053684.9	ENSMUST00000136432.2	2968	3	14	15	14	-2	multi-exon	FALSE	canonical	3	27	junction_1	61	14	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATGTATATATGGTTT	NA	False	NA	NA	False	NA	NA	NA	121575856	121588768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_121576116_121581402_121581522_121586207
96641	chr4	+	4071	9	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-13	-1	multi-exon	FALSE	non_canonical	0	0	junction_8	171.268612127266	242	38	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311759	145431010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145427474_145429340_145429675
96642	chr8	-	3530	2	Antisense	novelGene_ENSMUSG00000110669.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	399	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCACTTCCCAAACCGCTC	NA	False	NA	NA	False	NA	NA	NA	20033966	19834752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_19834861_20030544
96644	chrX	+	3122	2	Intergenic	novelGene_3949	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	73	junction_1	0	1	101	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	63977049	63982204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63979366_63981398
96646	chr5	+	4024	18	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	328	32	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAATTTCAGCGACCGGAA	NA	False	NA	NA	False	NA	NA	NA	31314058	31337488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31317206_31317291_31317436_31323228_31323358_31323702_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331111_31331436_31331577_31331839_31337226
96647	chr4	+	2655	8	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33147	-1720	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_7	266.71531869109	30	32	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTACGGAATCTTAATA	NA	False	NA	NA	False	NA	NA	NA	146500332	146553029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500544_146502756_146502850_146533486_146533533_146541048_146541166_146547961_146548020_146548860_146548988_146550437_146551344_146551932
96648	chr5	-	1079	1	Antisense	novelGene_ENSMUSG00000096617.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACGGTGTCTTTTGCCTT	NA	False	NA	NA	False	NA	NA	NA	96010579	96009500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96009500_96010600
96649	chr9	+	1527	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	35	-154	at_least_one_novel_splicesite	FALSE	canonical	3	419	junction_1	6030.49106982258	79	13	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAACCCTTGTGTGACT	NA	False	NA	NA	False	NA	NA	NA	64080709	64085794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080912_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
96650	chr19	-	3245	4	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	25.9272486435067	1	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22705271	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22699873_22699934_22700552_22700765_22703129_22705043
96651	chr13	+	6649	5	Genic_Genomic	ENSMUSG00000052551.17	novel	4318	11	NA	NA	-9794	128531	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	131	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCGGTGTGCAAGAAATTT	NA	False	NA	NA	False	NA	NA	NA	8798570	8947314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_8798580_8812227_8813380_8813488_8816816_8816926_8817321_8945547
96653	chr16	-	564	1	Intergenic	novelGene_3778	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96654	chr2	+	4453	3	FSM	ENSMUSG00000034850.16	ENSMUST00000174288.2	842	3	-30	-3581	-26	-5	multi-exon	FALSE	canonical	2	7	junction_1	67.5	81	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGAGGCTGTTTCCGGTCT	2369	False	NA	NA	False	NA	NA	NA	127089862	127103022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_127090005_127097924_127098090_127098876
96655	chr18	+	10299	12	Antisense	novelGene_ENSMUSG00000105200.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	123	73	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCAGCGCCGAGCCCGC	NA	False	NA	NA	False	NA	NA	NA	61424531	61533465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_61431857_61432657_61432812_61435689_61435811_61437777_61437857_61440279_61441083_61442098_61442169_61442718_61442754_61443477_61444578_61445222_61445345_61448810_61449021_61456205_61456378_61533357
96656	chr19	-	4199	23	Antisense	novelGene_ENSMUSG00000071650.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	489	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAACCCAAGAGTAAGTG	NA	False	NA	NA	False	NA	NA	NA	8894094	8879272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8879731_8879883_8879993_8882296_8882423_8884574_8884758_8885988_8886110_8886282_8886372_8886453_8886548_8886793_8886976_8887827_8887981_8888068_8888306_8888396_8888523_8888637_8888719_8888957_8889103_8889226_8889324_8889836_8889938_8890072_8890317_8891662_8891729_8891904_8891981_8892063_8892141_8892288_8892401_8892519_8892631_8892763_8892867_8892986
96657	chr2	-	1222	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11405	193	multi-exon	FALSE	canonical	0	0	junction_1	0	25	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAAGTG	NA	False	NA	NA	False	NA	NA	NA	11426246	11413648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414496_11425871
96658	chr11	-	2899	16	NNC	ENSMUSG00000051378.11	novel	3326	16	NA	NA	3	-379	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	83.4741210728744	10	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTCCACAGAAGCAGGGG	3727	False	NA	NA	False	NA	NA	NA	102815947	102796733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805583_102805705_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815808
96659	chr4	+	3536	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-1766	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	182.625858195472	2	96	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146096712	146135324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146096841_146102109_146102186_146126781_146126867_146129876_146130004_146131535_146132106_146132186_146132766_146132934_146133405_146133823
96660	chr17	+	950	6	FSM	ENSMUSG00000037805.16	ENSMUST00000129935.8	949	6	-1	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	2914.49848859113	356	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547593_28547784_28547860_28547940_28548255_28548347_28548497_28549498_28549672_28549803
96661	chr13	+	3172	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-11	519	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	126.207170953159	4	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62277688	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62295299_62295341_62317255_62317383_62317567_62317629_62318963
96663	chr11	-	2211	1	Intergenic	novelGene_2343	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTCTTGCAATTTGC	NA	False	NA	NA	False	NA	NA	NA	57447868	57445657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445700_57447900
96664	chr7	+	759	6	NNC	ENSMUSG00000012848.16	novel	794	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7303.45089940365	5	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	12656244	12660613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_12656350_12656899_12657009_12659318_12659534_12659663_12659784_12660322_12660422_12660502
96665	chr13	+	3274	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	5	519	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	127.079699401596	1	77	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62277751	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62315676_62315883_62317255_62317383_62317567_62317629_62318963
96666	chr11	+	2989	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	-11	-2452	-11	-3	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	246	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCCTCCACATCTGTCT	NA	False	NA	NA	False	NA	NA	NA	68792397	68797812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
96668	chr12	-	444	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	-57	-39	-57	39	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	75678149	75677705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_75677700_75678100
96669	chr9	+	8086	6	Intergenic	novelGene_1011	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	35	109	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGCTGCTGTGGCTTAG	NA	False	NA	NA	False	NA	NA	NA	35627987	35798271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_35630469_35631845_35633455_35665718_35665888_35681672_35682574_35694386_35694395_35795353
96670	chr1	+	1761	6	NIC	ENSMUSG00000026201.13	novel	1500	8	NA	NA	10	-6	intron_retention	FALSE	canonical	3	176	junction_1	28.1666469427939	2	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACCGTGTATATTTTAGG	NA	False	NA	NA	False	NA	NA	NA	75187501	75190877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189873_75190219_75190342_75190457
96671	chr9	+	6144	8	Intergenic	novelGene_1121	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	57	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGAAGCCCAGCTTGC	NA	False	NA	NA	False	NA	NA	NA	83273422	83323146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_83278111_83280565_83280695_83281678_83281822_83282655_83282749_83283663_83283805_83305077_83305606_83308645_83309015_83323093
96672	chr8	+	5014	6	ISM	ENSMUSG00000031770.17	ENSMUST00000161576.8	1952	8	11	-1113	11	1113	intron_retention	FALSE	canonical	3	438	junction_2	35.7513636103576	7	87	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTATATTGTGGTATATG	NA	False	NA	NA	False	NA	NA	NA	95113076	95123118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_95113367_95115983_95116062_95116148_95116224_95117345_95117477_95118359_95118483_95118801
96673	chr5	+	1111	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-37	-72	37	mono-exon	FALSE	NA	NA	NA	NA	NA	5	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGAGGCCCTATCCCAA	NA	False	NA	NA	False	NA	NA	NA	96009500	96010611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010600
96674	chr17	-	1120	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	64	-1	64	1	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	317	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTGTGTTCTGGCGCT	NA	False	NA	NA	False	NA	NA	NA	24388371	24382838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24383583_24383672_24383857_24388179
96675	chr11	-	5111	5	Antisense	novelGene_ENSMUSG00000065546.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	67	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAACAGCAGAGTCCGGG	NA	False	NA	NA	False	NA	NA	NA	96167157	96142097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_96142212_96142246_96142638_96152435_96155207_96155544_96155671_96165448
96676	chr18	-	1846	14	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	1	8	junction_5	51.279025551764	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2789	False	NA	NA	False	NA	NA	NA	34884589	34866045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
96677	chr17	-	1816	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3129	7347	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	60	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCGAGCGATGCCGCGGG	NA	False	NA	NA	False	NA	NA	NA	13143440	13135352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139339_13139630_13139752_13140987_13141160_13141511_13141620_13142104_13142297_13142415_13142573_13143138
96678	chr7	-	4867	22	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	17	692	combination_of_known_junctions	FALSE	canonical	3	18	junction_16	21.8533558292024	19	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTAGCCCAAAGGAAATGC	3756	False	NA	NA	False	NA	NA	NA	98305736	98239114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
96679	chr6	+	5535	23	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	2	-4	intron_retention	FALSE	canonical	0	0	junction_2	260.197195562351	12	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTGGTGTCAGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	87864911	87890573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882184_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
96680	chr14	-	4607	21	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-183	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.6174242385785	40	16	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655420	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54651336_54651471_54654045_54654228_54655357
96681	chr8	-	7820	37	Antisense	novelGene_ENSMUSG00000031592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	175	47	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCCGCAGTGCGAACTCC	NA	False	NA	NA	False	NA	NA	NA	41785378	41692673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_41692998_41709029_41709147_41710826_41711072_41712071_41712342_41714045_41714219_41720223_41720399_41723474_41723583_41725275_41725498_41727136_41727336_41728031_41728204_41728687_41728843_41728960_41729187_41732784_41732929_41733056_41733187_41735614_41735756_41736590_41736784_41739001_41739202_41740721_41740937_41741043_41741190_41741665_41741857_41743755_41743927_41746491_41746853_41757022_41757183_41762549_41762734_41763048_41763178_41765194_41765311_41766335_41766496_41766879_41767017_41768954_41769088_41774886_41775087_41777989_41778053_41778298_41778437_41778863_41779023_41780561_41780637_41781805_41782059_41783663_41783761_41783840
96682	chrM	-	2590	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	75	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTAGGGCTAGGATTAGTT	1	True	NA	7	True	NA	NA	NA	3702	1112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_3700
96683	chr13	+	5144	33	NNC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	-6	17162	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.378347470934	15015	59	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	NA	NA	NA	97274541	97334865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97274905_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107_97313100_97313306_97313409_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
96685	chr17	-	2304	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	3473.43221583849	80	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884192	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882107_45882679_45882838_45884092
96686	chr10	+	6043	22	FSM	ENSMUSG00000033105.13	ENSMUST00000048678.7	4667	22	18	-1394	13	255	multi-exon	FALSE	canonical	3	170	junction_9	27.7651309078683	238	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTCCCAGCACCCACAGG	NA	False	NA	NA	False	NA	NA	NA	76367458	76392707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
96687	chr13	-	3110	5	NNC	ENSMUSG00000114353.2	novel	464	4	NA	NA	0	875	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	80.0281200578897	4	40	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAGGAACCTTGACTTAG	NA	False	NA	NA	False	NA	NA	NA	66950624	66939258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66940626_66940876_66942336_66942701_66942763_66942962_66943090_66950528
96688	chr3	+	710	6	FSM	ENSMUSG00000038374.11	ENSMUST00000048915.11	2608	6	7	1891	0	0	multi-exon	FALSE	canonical	3	2531	junction_2	745.762804114016	4338	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTATTACTTTACTGTTC	8642	False	NA	-70	True	NA	NA	NA	96537255	96539216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747_96538885_96539004
96689	chr18	-	963	3	NNC	ENSMUSG00000024587.11	novel	2482	14	NA	NA	-175	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2634	17	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64645123	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633492_64644820_64644949_64645054
96690	chr4	+	1590	6	FSM	ENSMUSG00000032643.13	ENSMUST00000038684.6	1664	6	67	7	67	-7	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	103	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGGGAGCACGGGCCCCGT	NA	False	NA	NA	False	NA	NA	NA	124594579	124602397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_124594645_124599405_124599583_124599676_124599852_124601046_124601217_124601309_124601524_124601608
96692	chr1	-	5184	25	NIC	ENSMUSG00000026458.14	novel	5238	28	NA	NA	-1543	1	combination_of_known_junctions	TRUE	canonical	2	13	junction_22	14.4076922934321	76	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACAAATGGTGTCAGTT	NA	False	NA	NA	False	NA	NA	NA	134256547	134224525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_134226567_134227028_134227207_134228207_134228277_134231342_134231519_134232024_134232123_134237313_134237490_134239794_134239858_134240273_134240475_134240824_134240907_134241367_134241462_134244352_134244517_134244800_134244935_134245175_134245212_134245545_134245787_134246952_134247162_134248798_134248908_134250739_134250832_134251816_134251949_134252248_134252333_134254221_134254357_134254553_134254701_134254995_134255188_134255737_134255828_134256030_134256106_134256381
96693	chr19	+	3045	14	NNC	ENSMUSG00000024949.18	novel	2649	13	NA	NA	14	0	intron_retention	FALSE	non_canonical	0	0	junction_1	433.499384055308	44	61	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	848	False	NA	NA	False	NA	NA	NA	6413965	6427226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414011_6415721_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687_6425786_6425847
96694	chr17	+	1560	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-41	330	-41	-330	mono-exon	FALSE	NA	NA	NA	NA	NA	27	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGCTGCACGCGCGCTAC	NA	False	NA	7	True	NA	NA	NA	40157202	40158762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40158800
96695	chr4	-	2585	10	ISM	ENSMUSG00000028809.17	ENSMUST00000084846.12	3740	18	15172	3	1	-3	3prime_fragment	FALSE	canonical	3	663	junction_5	207.992046381646	49	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGAACATTGCCACTCA	8189	False	NA	NA	False	NA	NA	NA	135065383	135047804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114
96697	chr4	+	2806	12	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15_ENSMUSG00000086147.3	novel	387	3	NA	NA	-85455	269399	multi-exon	FALSE	non_canonical	0	0	junction_1	3.44975744745641	4	45	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGCTTTGGTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	146501028	147344611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146501167_146597241_146597335_146697966_146698085_146739355_146739414_146740256_146740380_146741831_146741973_146742638_146742712_146913092_146913168_146976971_146977069_147073422_147073522_147074355_147075831_147344295
96699	chr14	-	5421	21	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-75	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	74.6987951710066	10	34	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655312	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650180_54650242_54651336_54651471_54654045_54654228_54654833
96700	chr11	-	6388	9	NIC	ENSMUSG00000040430.19	novel	6329	10	NA	NA	-72	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	20.8862245271854	120	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTTCCGAGTGTAGCAT	NA	False	NA	NA	False	NA	NA	NA	107361597	107098722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_107103485_107107503_107107623_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107212412_107212502_107228237_107228387_107360716
96701	chr4	+	3625	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-37	5465	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.762366220348	156	64	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGGGGCTGTGGGACTCT	NA	False	NA	NA	False	NA	NA	NA	147576836	147603408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147595209_147595337_147596801_147597165_147598923_147599008_147600725
96702	chr4	-	2389	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	66	67	66	-67	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTGGTGTTGGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	137523629	137469110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
96703	chr14	-	3187	25	Antisense	novelGene_ENSMUSG00000030662.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	32	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCGCGCTGGCGGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	121183630	121148629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_121148754_121154765_121154847_121157332_121157525_121159534_121159640_121160450_121160548_121160891_121160996_121163610_121163734_121163822_121163946_121165869_121165955_121166709_121166820_121170253_121170381_121170462_121170551_121170639_121170816_121172441_121172660_121173833_121173911_121175969_121176110_121176244_121176308_121176869_121176969_121178233_121178405_121179041_121179154_121179239_121179296_121180058_121180184_121181091_121181311_121181743_121181972_121183486
96704	chr19	+	2606	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-1	0	intron_retention	FALSE	canonical	3	86	junction_7	104.324541695614	18	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATATGTAGCTTCTC	4138	False	NA	NA	False	NA	NA	NA	41921927	41932534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41929175_41929954_41930079_41930374_41930446_41932020
96705	chr13	-	3262	27	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	10	78	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	172.207736289256	3	90	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTTTTAGTGACAGGCT	7246	False	NA	NA	False	NA	NA	NA	113063922	113004310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113004530_113005544_113005603_113009444_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019632_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
96706	chr16	-	498	1	Intergenic	novelGene_3830	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGGAATGCGAGTGCCTA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96707	chr2	-	6934	25	NIC	ENSMUSG00000036591.17	novel	6920	24	NA	NA	24	-4	combination_of_known_junctions	FALSE	canonical	2	4	junction_24	24.9203940913194	125	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTTTGCACTGTTGGGA	NA	False	NA	NA	False	NA	NA	NA	20973271	20852754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_20855197_20857848_20857881_20859745_20859852_20860164_20860207_20860391_20860518_20863711_20863802_20863877_20863952_20864528_20864608_20864691_20864848_20865114_20865258_20865781_20865919_20865996_20866062_20867890_20868176_20870075_20870202_20872612_20872650_20876202_20876306_20876420_20876580_20884771_20886663_20891916_20891972_20894685_20894765_20896895_20896989_20917087_20917113_20919442_20919623_20972140_20972532_20973253
96708	chr1	-	6691	5	NIC	ENSMUSG00000026088.16	novel	1231	7	NA	NA	25	-24	intron_retention	FALSE	canonical	3	173	junction_3	16.5906600230371	16	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAGAAAATCAAAT	NA	False	NA	NA	False	NA	NA	NA	37929463	37913905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_37918445_37918640_37918702_37920013_37921780_37924295_37924398_37929240
96709	chr5	-	1744	11	FSM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	38	-151	25	149	multi-exon	FALSE	canonical	3	7	junction_9	5.37494186015067	26	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAGGTAAGGTGGCGGGG	9960	False	NA	NA	False	NA	NA	NA	122492258	122463419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
96710	chr2	-	3809	5	NNC	ENSMUSG00000078867.10	novel	1077	4	NA	NA	-161227	2794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.06217782649107	6	88	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAACTTGCTTCTTGG	NA	False	NA	NA	False	NA	NA	NA	177251340	177076122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177079501_177079668_177079803_177081219_177081347_177247349_177247403_177251223
96711	chr16	-	540	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	-4	435	-4	-4	multi-exon	FALSE	canonical	3	6062	junction_1	348	104	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAACAGTTTCTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	37474819	37467966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_37468082_37469375_37469523_37474541
96712	chr19	+	10888	2	NNC	ENSMUSG00000069833.14	novel	18100	5	NA	NA	3875	-3950	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	153	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGATCTGGAGTTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	8980898	8992610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8984351_8985174
96713	chr5	-	1508	5	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	342	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1796.50347898355	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	4003	False	NA	NA	False	NA	NA	NA	142891234	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889338_142889518_142889697_142889821_142890004_142890098_142890538_142890991
96714	chr15	+	1017	3	Genic_Genomic	ENSMUSG00000116090.2	novel	586	1	NA	NA	-26	197265	multi-exon	FALSE	non_canonical	0	0	junction_1	0	195	18	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGTACCTGTGACAACT	NA	False	NA	NA	False	NA	NA	NA	8004529	8202406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_8005201_8035830_8035834_8202063
96715	chr2	+	1591	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	57	353	-4	-77	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	12	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTCCTCTTAATTGCC	NA	False	NA	NA	False	NA	NA	NA	69691962	69701777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
96716	chr17	-	2691	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	10	317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	717.8895179622	61	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTGTGTGTATTTTG	4836	False	NA	NA	False	NA	NA	NA	25179600	25161126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25162924_25163158_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
96717	chr3	+	3194	12	NNC	ENSMUSG00000028101.19	novel	2931	14	NA	NA	20	0	intron_retention	FALSE	non_canonical	0	0	junction_4	71.6038227891258	1	119	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	3357	False	NA	NA	False	NA	NA	NA	96604468	96613278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96608533_96608737_96608931_96609038_96609487_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
96718	chr2	-	4073	9	Antisense	novelGene_ENSMUSG00000033943.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCGCACGCGCTCCTACC	NA	False	NA	NA	False	NA	NA	NA	119762410	119727699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_119727827_119733085_119734213_119746909_119747853_119750104_119750184_119750290_119750387_119751844_119752328_119753911_119754563_119756854_119757203_119762191
96719	chrM	-	952	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTCAGTTTGGTTCCCTC	-66	True	NA	NA	False	NA	NA	NA	11544	10592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10600_11500
96720	chr2	+	2440	7	NNC	ENSMUSG00000037514.19	novel	646	6	NA	NA	-474	910	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	173.527855592889	80	13	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGTTTGTTTCAGAGCCT	390	False	NA	NA	False	NA	NA	NA	131103940	131139521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_131104018_131115830_131116184_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
96721	chr16	+	3893	7	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	19	0	intron_retention	FALSE	canonical	3	1545	junction_2	218.038031850715	3	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6896	False	NA	NA	False	NA	NA	NA	22927350	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927384_22927468_22927602_22927869_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
96722	chr3	+	502	5	ISM	ENSMUSG00000038374.11	ENSMUST00000048915.11	2608	6	0	2226	0	-335	5prime_fragment	FALSE	canonical	3	2531	junction_2	801.218759141347	76	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGTAAGATGAAGGGATGG	8635	False	NA	-77	True	NA	NA	NA	96537248	96538881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96537345_96537617_96537678_96537795_96537871_96538181_96538319_96538747
96723	chr3	+	1661	7	Antisense	novelGene_ENSMUSG00000040943.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	21	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCTTTGCTTATCATTG	NA	False	NA	NA	False	NA	NA	NA	133177214	133192259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_133177246_133179360_133179449_133182247_133182404_133185877_133186105_133187095_133187186_133188996_133189081_133191274
96724	chr15	-	10065	47	NNC	ENSMUSG00000022141.8	novel	9423	47	NA	NA	-162	0	intron_retention	TRUE	non_canonical	0	0	junction_37	24.6487230158846	223	77	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTGTTTCCATTTGAA	NA	False	NA	NA	False	NA	NA	NA	8474109	8320100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687_8380524_8380589_8381296_8388123_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
96725	chr5	+	3001	13	ISM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	9474	26	7120	-26	3prime_fragment	FALSE	canonical	3	13	junction_6	6.51227473485434	54	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAGAAAAATTAAATCCGTA	1668	False	NA	NA	False	NA	NA	NA	65136887	65199203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65137407_65153157_65153246_65163140_65163255_65163376_65163487_65166330_65166466_65172658_65172812_65178944_65179069_65185752_65185845_65187407_65187570_65188597_65188738_65191714_65191788_65196030_65196085_65197966
96726	chrX	-	3026	3	Intergenic	novelGene_4024	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	45.5	1	109	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTCTTGCAATTTGCAAA	NA	False	NA	NA	False	NA	NA	NA	116231727	116226576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116227411_116229474_116231077_116231137
96727	chr17	-	575	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4789	29	1254	-29	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	39	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGCAAAATAAAGAAGATGCA	NA	False	NA	NA	False	NA	NA	NA	45879408	45878729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
96728	chr15	-	2510	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-45	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	6	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCATGAGTCTCAGTGG	713	False	NA	NA	False	NA	NA	NA	36793808	36771016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772005_36772274_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
96729	chr7	-	1485	7	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGGTATACACCGTGTG	NA	False	NA	NA	False	NA	NA	NA	46505026	46497018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46497168_46498394_46498513_46499599_46499774_46500306_46500482_46501299_46501417_46503404_46503529_46504398
96730	chr7	+	3226	16	NNC	ENSMUSG00000061079.15	novel	3003	16	NA	NA	-1	248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	73.0017960205242	9	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAATACATATAGAT	NA	False	NA	NA	False	NA	NA	NA	109660915	109694849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688051_109690971_109691134_109692276_109692424_109693497
96731	chr11	+	3208	7	ISM	ENSMUSG00000052915.15	ENSMUST00000037915.9	4593	9	4551	5	-98	-5	3prime_fragment	FALSE	canonical	3	39	junction_1	7.2953562094131	94	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGAACTTTTGCCTCAT	361	False	NA	NA	False	NA	NA	NA	98690892	98698680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98691209_98693093_98693142_98693607_98693673_98694728_98694797_98695127_98695253_98695672_98695746_98696167
96732	chr4	+	4081	7	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-40311	-856	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	282.877132731195	389	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTATGTCCATCCACTA	NA	False	NA	NA	False	NA	NA	NA	146493168	146553893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146493332_146502756_146502850_146508052_146508139_146533486_146533585_146547961_146548020_146548860_146548988_146550437
96733	chr4	+	2254	5	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4294	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	81.0832905104375	29	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146038208	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146054375_146054480_146058453_146058581_146060726_146061191_146061779
96734	chr15	+	2767	15	ISM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	18	67132	-9	-17071	5prime_fragment	FALSE	canonical	3	495	junction_3	75.662010255599	7	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGTCAATGAGTAATTTAG	71	False	NA	NA	False	NA	NA	NA	12824966	12868245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681
96736	chr5	+	335	1	Intergenic	novelGene_909	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	129	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGCGTCCGCCATGCCGGT	NA	False	NA	NA	False	NA	NA	NA	146197788	146198123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
96738	chrM	+	1013	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-53	-3	-53	3	mono-exon	FALSE	NA	NA	NA	NA	NA	51	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	274	False	NA	56	True	NA	NA	NA	2697	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
96740	chr11	-	1280	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	130	223	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	7	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113076	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
96741	chrM	+	1528	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-263	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	26	False	NA	NA	False	NA	NA	NA	9903	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_10568_10680
96742	chr7	+	2980	7	ISM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	70	11952	6	2351	5prime_fragment	FALSE	canonical	3	1225	junction_3	36.9898634763634	12	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATTCCCAAATCTCACTGA	NA	False	NA	NA	False	NA	NA	NA	120234468	120246795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373
96743	chr4	+	3239	4	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	12	-5	intron_retention	FALSE	canonical	3	18	junction_1	189.677504084052	1	102	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCATTGGTTTACTTAATG	NA	False	NA	NA	False	NA	NA	NA	98615041	98626712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615239_98615631_98615708_98621379_98622316_98624682
96744	chr13	+	4374	8	Intergenic	novelGene_1438	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	44	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCGGAAGATCCCGCCT	205	False	NA	NA	False	NA	NA	NA	66589381	66950642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66590092_66829334_66832303_66834626_66834801_66836256_66836399_66841838_66841914_66942698_66942762_66942961_66943089_66950527
96745	chr11	+	1456	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	38	5	38	-5	multi-exon	FALSE	canonical	3	35417	junction_1	0	23	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATATATGGTGTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	62442034	62444034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
96746	chr12	+	4028	13	Antisense	novelGene_ENSMUSG00000113776.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	76	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTCCCGGCTGTGACCCA	NA	False	NA	NA	False	NA	NA	NA	84198786	84265671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_84199335_84199607_84199805_84201667_84201882_84203200_84203354_84205031_84205117_84205748_84205829_84206426_84206528_84206648_84206792_84207252_84207320_84209029_84209375_84218232_84218538_84219530_84221197_84265547
96747	chr4	-	8648	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	1537	63706	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.061487993083	10	152	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAACCCTCAAAATAGGT	NA	False	NA	NA	False	NA	NA	NA	146992447	146912446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913157_146913409_146914452_146976159_146977116_146978205_146978333_146982168_146982273_146985661_146988801_146989007_146990751_146991620
96748	chr4	-	4534	7	Intergenic	novelGene_2126	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	225	144	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACACACTAGGCACTAGTC	NA	False	NA	NA	False	NA	NA	NA	147346087	147056487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147056578_147058407_147058502_147067152_147067252_147071088_147071217_147073382_147074950_147075033_147077193_147345690
96749	chr17	-	7099	20	NNC	ENSMUSG00000096780.8	novel	2426	9	NA	NA	-10149	8350	intron_retention	FALSE	non_canonical	0	0	junction_1	349.191333308285	18	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGTCAGGCC	2319	False	NA	NA	False	NA	NA	NA	6744570	6697572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699319_6702404_6702530_6702867_6702945_6703293_6706243_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
96750	chr11	+	6933	13	NNC	ENSMUSG00000017639.14	novel	677	3	NA	NA	29	-20	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	29.6014029322185	147	40	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGGCTTTTTGTGCCTGA	NA	False	NA	NA	False	NA	NA	NA	79551416	79588829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_79551683_79571613_79571838_79574235_79574362_79575048_79575184_79575426_79575463_79575853_79575954_79576211_79576316_79577377_79577519_79580440_79580523_79581283_79581422_79581497_79581654_79582581_79582726_79583548
96751	chr4	+	4177	6	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-195182	63381	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	211.212689012758	2	24	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACAAGGTTGACTTGG	NA	False	NA	NA	False	NA	NA	NA	146500235	146805998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500373_146697966_146698060_146797295_146797355_146800492_146800518_146802050_146803953_146804037
96752	chr2	+	1609	11	NNC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-3	-5	intron_retention	FALSE	non_canonical	0	0	junction_7	84.5901294478262	20	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAAGTGGTTTGTCTTTGT	5678	False	NA	NA	False	NA	NA	NA	22785603	22830273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805560_22819532_22819633_22819755_22819870_22825570_22825652_22829834
96753	chr4	+	936	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGAGAGCTATTCTGTC	NA	False	NA	NA	False	NA	NA	NA	91740031	91740967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91740000_91741000
96754	chr11	-	1263	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-188	-73	188	mono-exon	FALSE	NA	NA	NA	NA	NA	13	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGAAGCCT	4388	False	NA	NA	False	NA	NA	NA	20286086	20284823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
96755	chr3	+	3067	3	NIC	ENSMUSG00000054199.19	novel	7587	33	NA	NA	16071	0	intron_retention	FALSE	canonical	3	153	junction_1	2	82	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAAGTGTTCGTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88813812	88817406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_88815915_88815993_88816097_88816544
96756	chrX	+	4563	5	Antisense	novelGene_ENSMUSG00000051224.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	55	72	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAACAGTGATGGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	165282813	165293970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_165286402_165288701_165288836_165290707_165290745_165291903_165292001_165293263
96757	chr17	+	3464	5	ISM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	16029	10	-58	-5	3prime_fragment	FALSE	canonical	3	160	junction_2	14.3069039278245	1	174	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCAGTAATTGGTCTGTA	-2	True	NA	NA	False	NA	NA	NA	24038223	24043705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24040665_24041386_24041675_24042764_24042879_24042989_24043095_24043189
96758	chr12	-	1417	9	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	59874	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3394.20067909957	341	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCGGGCGGTGGTGGCAC	NA	False	NA	NA	False	NA	NA	NA	111638731	111575920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111576043_111635796_111636176_111636258_111636308_111636588_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
96759	chr16	-	4907	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	-4	-2259	-4	-946	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	6	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAACAGAATTTTTTTTTT	3249	False	NA	NA	False	NA	NA	NA	78373539	78338171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
96760	chr15	-	1495	6	NNC	ENSMUSG00000091119.3	novel	798	9	NA	NA	2	-46	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_5	12.3547561691844	83	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAGAGTTTAAGTAAAGAA	8098	False	NA	NA	False	NA	NA	NA	3333006	3309597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_3310232_3310504_3310589_3312299_3312428_3327582_3327689_3330586_3330676_3332552
96761	chr3	-	592	1	FSM	ENSMUSG00000070343.4	ENSMUST00000084614.5	537	1	-13	-42	-13	42	mono-exon	FALSE	NA	NA	NA	NA	NA	22	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATTAAAGAAGTG	NA	False	NA	NA	False	NA	NA	NA	146545115	146544523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_146544500_146545100
96762	chr4	+	6249	7	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-59	182482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	169.731569118875	57	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146586424	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586602_146597241_146597335_146797295_146799698_146800035_146800518_146802050_146802425_146803516_146805770_146805866
96763	chr3	+	860	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	107	-2	-3	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	4	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACTAGCTTTAAACTT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
96764	chrM	+	2258	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1306	5	-1306	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	17	False	NA	-15	True	NA	NA	NA	1444	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1400_3700
96765	chrX	+	10537	23	Fusion	ENSMUSG00000041245.14_ENSMUSG00000086286.2	novel	5253	22	NA	NA	-12	-10	multi-exon	TRUE	canonical	1	1	junction_1	7.41452672876498	89	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGTTAAATGAGTATGTC	NA	False	NA	NA	False	NA	NA	NA	149952683	150103138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_+_149952956_149981017_149981670_149990593_149990767_149992270_149992492_149993868_149994027_150009451_150009541_150013228_150013449_150015940_150016236_150019529_150019631_150019888_150020033_150049263_150049329_150057913_150058062_150059848_150059966_150067265_150067422_150067500_150067553_150068774_150068913_150069255_150070203_150076805_150076897_150077417_150077549_150078359_150078971_150084561_150084771_150092277_150092481_150097794
96766	chr7	-	8552	18	NNC	ENSMUSG00000101845.2	novel	471	4	NA	NA	7845	24272	intron_retention	FALSE	non_canonical	0	0	junction_1	0	335	90	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTCAAATAGATTTGGATGA	NA	False	NA	NA	False	NA	NA	NA	127164443	127134041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_127134131_127137169_127137341_127137672_127137938_127138117_127138409_127138928_127139094_127139827_127140093_127140411_127141877_127148305_127148576_127148702_127148907_127151429_127151600_127151736_127151934_127152030_127152147_127152344_127152465_127156577_127156779_127156935_127157022_127157139_127160956_127162291_127162463_127163953
96767	chr13	+	4264	2	Antisense	novelGene_ENSMUSG00000114031.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAAATGGCTTAGGATTG	NA	False	NA	NA	False	NA	NA	NA	65625850	65630315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_65628767_65628967
96768	chr5	-	3473	15	NIC	ENSMUSG00000029467.16	novel	4486	20	NA	NA	12261	5	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	329.365159303872	1	107	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATAACTGTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	122627419	122594397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_122595490_122595574_122595693_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300
96769	chr16	+	3191	10	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	39	0	intron_retention	FALSE	canonical	0	0	junction_1	640.709502556866	3	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6113	False	NA	NA	False	NA	NA	NA	22926567	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926658_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
96770	chr3	+	2564	8	NIC	ENSMUSG00000027940.19	novel	2190	9	NA	NA	-19	-301	intron_retention	FALSE	canonical	3	65	junction_7	1501.11101711842	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATTTTATATTATTTTGA	NA	False	NA	NA	False	NA	NA	NA	89986941	90007902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995784_89997103_89997167_89997316_89997387_89998319_89998399_90006834
96771	chr4	+	2279	8	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	35	1900	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	43.7128851316247	2	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145136870	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145151107_145151215_145159096_145159152_145160315_145160391_145173292_145173342_145176036_145176652_145177068
96772	chr7	-	8005	33	FSM	ENSMUSG00000030660.10	ENSMUST00000170430.3	8044	33	19	20	9	-9	multi-exon	TRUE	canonical	3	47	junction_32	13.7259733261434	119	28	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATTTCTGAAATAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	116042665	115936519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_115939459_115941386_115941513_115941596_115941707_115942045_115942119_115942209_115942328_115945353_115945479_115947354_115947563_115949267_115949378_115950007_115950165_115951032_115951203_115953212_115953350_115955469_115955600_115957870_115957964_115959230_115959336_115961281_115961463_115961792_115961888_115962583_115962678_115963662_115963852_115967278_115967425_115967981_115968094_115972029_115972198_115972962_115973086_115975457_115975669_115975748_115975795_115977854_115977999_115987078_115987143_115987276_115987357_115989678_115989791_115990507_115990629_115993435_115993594_116005094_116005199_116016687_116017817_116042538
96773	chr4	+	3860	3	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-226143	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	50.5	16	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147411590	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147411787_147664527_147665826_147667290
96774	chr17	+	3650	17	ISM	ENSMUSG00000024073.17	ENSMUST00000180037.8	15768	73	126091	283	-3	4	3prime_fragment	FALSE	canonical	3	23	junction_9	5.43139024560011	4	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGGCCTCTGAATGTA	NA	False	NA	-64	True	NA	NA	NA	74961380	75010068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996359_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198
96775	chr17	+	2694	5	Intergenic	novelGene_32	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	56.9797113014799	1	73	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTCCGAGTATGCTGCTC	NA	False	NA	NA	False	NA	NA	NA	17225426	17261815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17225539_17257537_17257665_17257906_17257968_17259258_17261336_17261498
96776	chr11	-	2830	8	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	8	-5	intron_retention	FALSE	canonical	2	960	junction_1	158.49985514704	2	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGTTTGAGTGCAGAT	NA	False	NA	NA	False	NA	NA	NA	119190907	119179194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119179386_119179485_119179803_119183644_119183761_119184384_119185232_119185396_119186362_119186892_119186960_119188630_119188704_119190653
96777	chr2	+	4263	9	NNC	ENSMUSG00000033943.16	novel	825	2	NA	NA	-24667	5234	intron_retention	FALSE	canonical	3	67	junction_1	25.2558780286887	31	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGTGGTAAGCCTGTT	7985	False	NA	NA	False	NA	NA	NA	119703041	119762406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119703365_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119751846_119752324_119753908_119754568_119756859_119757203_119762191
96778	chr17	+	1823	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	2	24	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	35	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGGGAGACTGTGGAGGA	NA	False	NA	-1	True	NA	NA	NA	40157267	40159090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159100
96779	chr12	-	2985	6	Genic_Genomic	ENSMUSG00000092597.3	novel	128	1	NA	NA	-46	147249	multi-exon	TRUE	non_canonical	0	0	junction_1	20.6726872950761	65	29	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATTGTCTCTATAATCAA	NA	False	NA	NA	False	NA	NA	NA	22324559	22177136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_22178639_22292704_22293445_22293695_22294077_22295404_22295466_22295667_22295795_22324385
96780	chr5	+	1214	2	Antisense	novelGene_ENSMUSG00000051391.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCAACAACTACGATTTC	2159	False	NA	NA	False	NA	NA	NA	135937263	135938535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135938113_135938170
96781	chr15	-	2965	9	NIC	ENSMUSG00000022570.8	novel	1355	11	NA	NA	0	-6	intron_retention	FALSE	canonical	3	27	junction_5	160.281783119605	7	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGAGCCTGGACTCAGAA	8932	False	NA	NA	False	NA	NA	NA	75801589	75796537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798647_75798722_75798815_75800899_75801567
96782	chr11	+	3027	14	NNC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	4	173	intron_retention	FALSE	canonical	3	13	junction_3	62.9666014598873	120	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	NA	False	NA	NA	NA	29476460	29495452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_29476844_29479928_29480155_29480580_29480779_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
96783	chr5	+	341	1	Intergenic	novelGene_912	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	780	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCATGCCGGTGGTCCC	NA	False	NA	NA	False	NA	NA	NA	146197788	146198129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
96784	chr2	+	4365	17	FSM	ENSMUSG00000044042.20	ENSMUST00000081349.9	4235	17	-177	47	-177	-44	multi-exon	FALSE	canonical	3	8	junction_2	4.19076365356005	57	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACATGGTGATCCCCAAGA	NA	False	NA	NA	False	NA	NA	NA	113271231	113540153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_113273005_113274686_113274805_113309246_113309309_113355495_113356287_113359657_113359809_113393627_113393716_113412442_113412505_113414375_113414465_113423431_113423562_113425367_113425515_113426677_113426738_113433513_113433635_113467076_113467170_113518453_113518506_113523353_113523504_113538207_113538293_113539760
96785	chr11	-	2992	11	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	-8	intron_retention	FALSE	non_canonical	0	0	junction_2	6182.80601021898	6	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAGTAGCACTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	33113077	33102518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104314_33104535_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
96786	chr15	+	7473	38	Antisense	novelGene_ENSMUSG00000022141.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	83	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGCTGATTTTCATTTGG	NA	False	NA	NA	False	NA	NA	NA	8319790	8380898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_8321075_8321579_8321810_8322567_8322745_8324996_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332510_8332875_8333056_8335336_8335422_8336351_8336512_8337050_8337141_8337327_8337473_8340628_8340770_8341820_8341927_8347846_8347899_8348938_8349040_8351969_8352104_8352891_8353040_8353135_8353235_8353731_8353832_8353922_8354148_8355173_8355256_8356480_8356635_8357234_8357362_8357875_8357959_8359662_8359797_8361868_8361971_8362488_8362571_8363062_8363216_8364332_8364566_8364667_8364747_8366327_8366440_8367990_8368083_8368164_8368237_8368358_8368557_8372958_8373139_8379684
96787	chr9	+	4843	25	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-2	-223	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	799.235015108197	1	79	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTCGATTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	72569717	72656911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646401_72650844_72650919_72653688_72653762_72654407
96788	chr15	-	3218	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	41	junction_1	0	133	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACAACAAGACCGTTTT	9795	False	NA	NA	False	NA	NA	NA	22705095	22699829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700670_22702717
96789	chr2	+	4461	14	NIC	ENSMUSG00000026858.19	novel	3586	16	NA	NA	-91	0	intron_retention	FALSE	canonical	3	43	junction_5	6.52351232218898	3	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCTCTGTGTCTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	30257615	30275531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30257800_30258888_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
96790	chr4	-	2932	10	NNC	ENSMUSG00000043872.15	novel	3852	8	NA	NA	-11862	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	173.851646704103	8	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCCTAATGAAGTTTTGT	2041	False	NA	NA	False	NA	NA	NA	126966807	126941384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_126941527_126941875_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788_126954849_126966783
96791	chr2	-	6179	12	Antisense	novelGene_ENSMUSG00000099091.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.287479787288034	43	85	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGGGCGGAGCATACGGA	5842	False	NA	NA	False	NA	NA	NA	162926602	162896505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162896722_162901418_162901513_162903441_162903514_162904372_162904467_162906196_162906419_162910073_162910234_162914541_162914834_162916300_162916722_162917552_162919807_162921511_162921627_162922636_162922742_162924468
96792	chrX	+	6022	27	Intergenic	novelGene_4003	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATATCCATATCTAAATCC	NA	False	NA	NA	False	NA	NA	NA	104843663	104920310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_104844063_104844953_104845083_104845586_104845680_104846290_104846421_104847388_104847542_104861639_104861832_104862947_104863127_104864381_104864489_104867312_104867422_104869706_104869859_104874451_104874627_104874800_104874880_104876051_104876182_104879913_104880034_104881844_104882021_104883446_104883584_104889101_104889278_104889397_104889546_104890289_104890400_104891185_104891328_104894640_104894879_104895572_104895672_104896887_104896984_104899463_104899638_104900063_104900227_104911458_104911529_104918164
96793	chr10	+	4284	11	NIC	ENSMUSG00000006498.17	novel	1765	12	NA	NA	-6	3	intron_retention	FALSE	canonical	3	638	junction_7	302.42501549971	17	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	1579	False	NA	NA	False	NA	NA	NA	79690456	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79698376_79698486_79698704_79698811_79698890_79698978
96795	chrX	+	6919	5	Intergenic	novelGene_3936	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16	63	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTAGTCTGTAAGCTC	NA	False	NA	NA	False	NA	NA	NA	63927747	64293417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63930670_64051835_64051874_64131751_64134114_64291731_64293105_64293193
96797	chr2	-	3313	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	22	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	187.767878087991	5	34	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGACCTAGTTGTTCTAAA	NA	False	NA	NA	False	NA	NA	NA	127673757	127643040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663870_127663915_127665878_127665980_127667026_127667071_127669220_127669397_127671408_127671497_127671597_127671658_127673639
96798	chr17	+	3034	5	NNC	ENSMUSG00000039218.18	novel	8564	14	NA	NA	117	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	75.690157880665	4	90	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGGTCTGTAGTCTTT	156	False	NA	NA	False	NA	NA	NA	24038398	24043711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24040581_24041563_24041675_24042764_24042879_24042989_24043095_24043189
96799	chr5	+	381	1	Intergenic	novelGene_952	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1613	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197794	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
96800	chr7	-	1419	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	91	1	7	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	4	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTTCATGTCTTG	NA	False	NA	NA	False	NA	NA	NA	126398335	126394406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
96801	chr13	-	3188	5	NNC	ENSMUSG00000072066.8	novel	1457	4	NA	NA	43	414	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	7.79422863405995	83	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAAGGCAATTTTTAGAA	NA	False	NA	NA	False	NA	NA	NA	62771951	62750412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62753195_62754939_62755001_62755186_62755314_62770760_62770879_62771851
96803	chr4	+	2252	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-10770	-3	multi-exon	TRUE	non_canonical	0	0	junction_1	0.433012701892219	3	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGCTTTGATTGTTTCC	NA	False	NA	NA	False	NA	NA	NA	145162539	145265755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145162684_145173283_145173342_145174456_145174578_145176036_145176579_145264368
96804	chr11	-	4953	12	FSM	ENSMUSG00000040548.17	ENSMUST00000042780.14	4934	12	-11	-8	-11	8	multi-exon	FALSE	canonical	3	112	junction_11	20.6061051692923	129	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAGCATGTTATTTTTTA	3320	False	NA	NA	False	NA	NA	NA	106503767	106392964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
96805	chr7	-	3744	1	Intergenic	novelGene_3021	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	68	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGAGGCACTGAGTCTAA	5928	False	NA	NA	False	NA	NA	NA	110608980	110605236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_110605200_110609000
96806	chr17	-	2498	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4	18	4	-18	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	469	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884193	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
96807	chr15	-	3427	5	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	40	-1	intron_retention	FALSE	canonical	3	26994	junction_1	2281.12903788891	3	79	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	4381	False	NA	NA	False	NA	NA	NA	79966744	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962628_79962907_79964754_79965096_79965985_79966590
96808	chr9	-	7880	42	Fusion	ENSMUSG00000101867.2_ENSMUSG00000097777.8	novel	600	4	NA	NA	-30725	-9098	multi-exon	TRUE	non_canonical	0	0	junction_1	0	47	89	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGTCCGCCAGACCATAGA	NA	False	NA	NA	False	NA	NA	NA	95937518	95836819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_95836995_95846021_95846251_95849757_95849861_95851283_95851394_95851497_95851609_95852779_95852863_95855329_95855418_95855500_95855670_95856446_95856517_95856814_95856951_95859580_95859648_95859847_95859956_95861187_95861275_95863825_95863983_95867234_95867355_95870887_95871058_95873026_95873150_95873242_95873341_95877152_95877253_95880263_95880401_95881466_95881628_95884185_95884302_95885896_95885996_95888049_95888166_95888753_95888898_95893260_95893353_95893575_95893711_95899801_95899861_95900099_95900231_95903856_95903927_95906072_95906271_95908887_95908985_95915635_95915747_95917687_95917748_95920669_95920781_95920929_95921054_95921751_95921898_95927538_95927713_95929833_95929947_95930391_95930494_95933682_95933815_95934570
96809	chr2	-	1198	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-73	208	multi-exon	FALSE	canonical	0	0	junction_1	0	12	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCTTAGCTGGGCATG	NA	False	NA	NA	False	NA	NA	NA	28824694	28823413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28823765_28823847
96810	chr15	-	1987	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	214	junction_6	10244.8949482169	80	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
96811	chr4	+	2942	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-30	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	42.3411798395378	25	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206870	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146291416_146291510_146293441_146293573_146368115_146368196_146388486_146388614_146390758_146390897_146391646_146393458_146552638
96812	chr4	+	2692	8	NIC	ENSMUSG00000028601.19	novel	1307	10	NA	NA	-203	-8	intron_retention	FALSE	canonical	3	713	junction_3	45.2002347835694	6	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTGTTAGCTTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	108022430	108036495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567
96814	chr13	+	2547	4	Genic_Genomic	ENSMUSG00000113626.2	novel	2239	3	NA	NA	-60944	462	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	59	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61891126	62009951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_61891221_62007335_62008182_62008260_62009158_62009241
96815	chr7	-	546	7	NNC	ENSMUSG00000074129.15	novel	562	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6088.85193748926	57	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776440_44776517_44776632_44776699_44776919_44776993_44778123
96816	SIRV12001	-	1615	1	Antisense	novelGene_SIRV12001A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	106	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACGAGCGCGATACCATG	NA	False	NA	NA	False	NA	NA	NA	1965	350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV12001_-_400_2000
96817	chr8	-	3388	2	NNC	ENSMUSG00000038225.16	novel	3943	14	NA	NA	10985	661	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGTTCCTAACCCTAA	NA	False	NA	NA	False	NA	NA	NA	47034663	47031236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47033453_47033491
96818	chr1	+	2292	10	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-32	-258	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	280.912446269537	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTTCTCAAACGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	167177772	167195843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184278_167184878_167185020_167188971_167189161_167189372_167189461_167193255_167193457_167194973
96819	chrUn_MU069435v1	-	2008	2	Intergenic	novelGene_4778	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	35	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAAAAGGCAAACTTA	NA	False	NA	NA	False	NA	NA	NA	23385	18677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_19914_22613
96820	chr4	-	1214	6	FSM	ENSMUSG00000003038.16	ENSMUST00000102553.11	1265	6	40	11	40	-11	multi-exon	FALSE	canonical	3	1307	junction_3	652.309558415328	21	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTGGAATGCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	133695272	133692059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133695105
96822	chr11	-	3292	21	FSM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	43	0	0	0	multi-exon	FALSE	canonical	3	70	junction_20	9.90908673894825	98	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8180	False	NA	NA	False	NA	NA	NA	3489249	3467522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
96823	chr7	+	3127	18	NNC	ENSMUSG00000070699.6	novel	1868	16	NA	NA	-2350	-44	intron_retention	FALSE	non_canonical	0	0	junction_1	95.8648125421263	58	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCACAATAAATGGTCGTG	1600	False	NA	NA	False	NA	NA	NA	28439066	28453252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28439664_28440910_28440982_28441231_28441708_28443666_28443763_28443985_28444145_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
96824	chr4	-	5535	18	Antisense	novelGene_ENSMUSG00000040455.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	70	25	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGAGAAGGCGGGGCTTGGC	NA	False	NA	NA	False	NA	NA	NA	21837869	21776256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_21776316_21780338_21780448_21781732_21781906_21782879_21782986_21784691_21784792_21796783_21796927_21797292_21797390_21798603_21798736_21804225_21804312_21810739_21810822_21815304_21815407_21816889_21816937_21824414_21825075_21826150_21826250_21830414_21830501_21832160_21832317_21834233_21834462_21834799
96825	chr16	-	497	1	Intergenic	novelGene_3833	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	330	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGAATGCGAGTGCCT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96826	chr14	+	875	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-1	-20	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAACTCAAGAAGGTG	NA	False	NA	NA	False	NA	NA	NA	46321483	46322437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_46321510_46321588
96827	chr13	+	1649	5	Antisense	novelGene_ENSMUSG00000065434.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGCACATGTTGCAATG	NA	False	NA	NA	False	NA	NA	NA	58539051	58542179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_58540291_58541009_58541180_58541505_58541590_58541874_58541976_58542124
96828	chrM	+	1459	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	759	-394	759	394	mono-exon	FALSE	NA	NA	NA	NA	NA	16	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACCCACTAACAATTAAAC	41	False	NA	-7	True	NA	NA	NA	12500	13959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12500_14000
96829	chr17	+	6359	9	NNC	ENSMUSG00000044501.18	novel	2973	4	NA	NA	-23464	619	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	16.6939360247965	268	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAACTACCTGTATGATATA	NA	False	NA	NA	False	NA	NA	NA	22556969	22596881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_22559089_22559947_22560077_22562622_22562677_22577803_22577903_22578425_22578506_22580148_22580689_22590971_22591070_22592623_22592751_22593768
96830	chr5	+	869	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	25	5	-19	-5	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	648	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACACACACTGTACCGT	4513	False	NA	NA	False	NA	NA	NA	122529965	122544237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
96831	chr17	-	903	2	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	765	1	intron_retention	FALSE	canonical	3	10930	junction_1	0	28	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	-84	True	NA	NA	NA	45879897	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45879489_45879783
96832	chr7	-	446	5	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	995	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6135.55743188832	31	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	9434	False	NA	NA	False	NA	NA	NA	99131846	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99129150_99129271_99130903_99130999_99131467_99131562_99131776
96833	chr4	+	3366	4	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	-18	2142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	104.439243369318	3	67	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTAACAAGGTTGACT	2351	False	NA	NA	False	NA	NA	NA	147445741	147477603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147445910_147447267_147447387_147472773_147472906_147474656
96834	chr9	+	2222	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	202	8	-3	-8	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	5	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTGTTGTGTTTTGT	1866	False	NA	NA	False	NA	NA	NA	59563852	59586650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
96835	chr5	+	1598	2	Antisense	novelGene_ENSMUSG00000106606.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACCATGGGCTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	83174610	83325052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_83176154_83324997
96836	chr13	-	4229	5	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18645	3594	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	30.2200264725232	2	100	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACATTTTATTTCTGAC	NA	False	NA	NA	False	NA	NA	NA	74739508	74723882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74727579_74728971_74729033_74729232_74729360_74731765_74731993_74739390
96838	chr4	+	3094	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	4	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	40.1690870640043	5	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206904	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146291416_146291510_146293441_146293573_146368115_146368239_146384286_146384431_146388486_146388614_146390758_146390904_146391317_146392124_146392460_146393458_146552638
96839	chr13	+	6592	14	ISM	ENSMUSG00000021699.18	ENSMUST00000074103.12	2167	15	54230	-4489	-16835	2502	3prime_fragment	FALSE	canonical	3	20	junction_2	4.79644839019074	44	112	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAACGATTTTGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	109876919	110092497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_109877113_109894110_109894148_109906067_109906142_109909164_109909215_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
96840	chr19	+	5074	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	381	0	-21	0	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	2894	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1448	False	NA	NA	False	NA	NA	NA	44282493	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
96841	chr14	+	4650	4	NNC	ENSMUSG00000046204.15	novel	5518	3	NA	NA	3	-970	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	11.7756811551038	18	86	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATCGTGAGTTGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	67148693	67157502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_67148743_67151755_67151933_67152770_67152900_67153207
96842	chr7	+	2516	4	Antisense	novelGene_ENSMUSG00000005610.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	87	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACACAAAGCAATTTCTC	NA	False	NA	NA	False	NA	NA	NA	110669935	110673754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673298_110673457_110673546
96843	chr13	-	1945	5	Fusion	ENSMUSG00000113623.2_ENSMUSG00000113495.2	novel	2021	2	NA	NA	-13	85	multi-exon	FALSE	canonical	0	0	junction_1	70.655856091339	9	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACTTTTGACTTGGCTC	NA	False	NA	NA	False	NA	NA	NA	62564840	62484191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_62485671_62487914_62488104_62555228_62555290_62555482_62555610_62564751
96844	chr9	+	3524	6	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-147	intron_retention	FALSE	canonical	3	17449	junction_3	1171.71798654796	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080657	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64083499_64084222_64084353_64084602_64084760_64085002_64085300_64085504
96845	chr13	-	6274	22	NNC	ENSMUSG00000021466.13	novel	7725	23	NA	NA	-71	-1138	intron_retention	FALSE	non_canonical	0	0	junction_15	29.8359079951607	7	136	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGTAAGGTACTAATTGGA	NA	False	NA	NA	False	NA	NA	NA	63711700	63657287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_63659890_63661374_63661630_63662055_63662156_63665925_63666069_63668082_63668221_63670813_63671095_63672758_63672943_63674960_63675104_63680350_63680661_63681077_63681481_63682103_63682223_63687046_63687173_63687627_63687727_63688495_63688652_63688970_63689103_63689976_63690127_63690901_63691020_63691303_63691503_63692849_63692942_63693050_63693121_63695809_63696000_63711436
96846	chr2	-	3099	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-255	1737	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.954858800762	126	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	2082	False	NA	NA	False	NA	NA	NA	177270258	177259259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177261259_177261510_177262087_177263226_177263288_177263479_177263607_177269922
96847	chr13	+	3202	22	NIC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	1	-4	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	63.7073809341392	4	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTTAAAAAAAAAACAGCCT	NA	False	NA	NA	False	NA	NA	NA	97274516	97312945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97288142_97288233_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
96848	chr4	-	2037	7	ISM	ENSMUSG00000050812.19	ENSMUST00000102889.10	7045	49	103023	17	2116	-17	3prime_fragment	FALSE	canonical	3	166	junction_5	24.7902310508707	5	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACTTAACATTTGATTC	NA	False	NA	NA	False	NA	NA	NA	58809726	58798927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_58800321_58801732_58801805_58803669_58803759_58805540_58805647_58807750_58807890_58809395_58809589_58809681
96849	chr5	-	5922	30	ISM	ENSMUSG00000029505.18	ENSMUST00000041558.15	10608	52	71698	87	304	-82	3prime_fragment	FALSE	canonical	3	63	junction_25	20.4215968308669	7	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACAAGCATTTGTACTTG	NA	False	NA	NA	False	NA	NA	NA	110846695	110812325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_110813941_110814405_110814484_110815333_110815481_110815928_110816057_110816415_110816612_110818740_110818963_110820974_110821160_110821272_110821481_110822726_110822837_110822909_110822956_110824316_110824614_110824725_110824805_110827829_110827887_110828007_110828145_110830664_110830839_110831001_110831244_110831711_110831866_110831952_110831998_110832398_110832534_110832942_110833027_110833217_110833377_110835663_110835808_110836057_110836170_110839484_110839682_110841031_110841202_110841285_110841489_110843138_110843405_110843818_110843914_110845074_110845234_110846617
96850	chr14	-	2403	3	Antisense	novelGene_ENSMUSG00000098192.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	40	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAACAGGGAGGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	48647127	48464609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_48465835_48543250_48543319_48646017
96851	chrX	+	7272	33	NNC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	-5411	-6615	intron_retention	TRUE	non_canonical	0	0	junction_1	104.473905234752	10	45	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAATGTTCAGACCTGAG	NA	False	NA	NA	False	NA	NA	NA	99663931	99761641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99667034_99667188_99667249_99667466_99667565_99668136_99668196_99668400_99668485_99668893_99668993_99669490_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99710985_99711094_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542
96852	chr15	+	1251	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	-175	-74	175	mono-exon	FALSE	NA	NA	NA	NA	NA	326	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	88	False	NA	NA	False	NA	NA	NA	12574900	12576151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12576200
96853	chr2	-	3337	9	NIC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	14	-4	intron_retention	FALSE	canonical	3	4129	junction_1	202.240535934318	67	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAGTCTCATTATTAA	9518	False	NA	NA	False	NA	NA	NA	10085307	10060844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_10060973_10061580_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
96854	chr4	+	4205	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	52	182028	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	186.070383188728	49	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCACGTCAATGTGACAAAT	NA	False	NA	NA	False	NA	NA	NA	146586535	146805880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146797298_146797381_146800390_146800518_146802050
96855	chr4	+	657	1	Intergenic	novelGene_2181	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCCAACATACAGGTCAGA	NA	False	NA	NA	False	NA	NA	NA	155781565	155782222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_155781600_155782200
96856	chr13	+	4094	11	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113350.3	novel	1525	4	NA	NA	-25	708	multi-exon	TRUE	non_canonical	0	0	junction_4	49.8854688261021	1	77	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGATGTTTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	66261268	66345281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325343_66325505_66327532_66327630_66327791_66334413_66334512_66340150_66340278_66341741_66341914_66343066_66343121_66344211
96857	chr16	+	1790	11	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	739.223301851342	1	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929438_22930293_22930343_22930566_22930647_22931100_22931212_22931916
96859	chr13	-	2884	3	FSM	ENSMUSG00000094942.8	ENSMUST00000202194.2	736	3	-47	-2101	-21	614	multi-exon	FALSE	canonical	1	2	junction_1	20.5	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGCTGATATGCATCCT	NA	False	NA	NA	False	NA	NA	NA	62531012	62515527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_62518166_62519623_62519751_62530893
96860	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
96862	chr11	+	5373	19	NIC	ENSMUSG00000000976.14	novel	5614	20	NA	NA	1	594	intron_retention	FALSE	canonical	3	50	junction_5	6.43030057089859	3	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTGTAGGGTTATATAA	4036	False	NA	NA	False	NA	NA	NA	83644540	83673441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
96863	chr5	-	1909	9	ISM	ENSMUSG00000028959.15	ENSMUST00000115043.8	3056	10	-34	2598	10	1	5prime_fragment	FALSE	canonical	3	1073	junction_8	121.284788823661	1228	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGTCTTGTTTCTGGGA	NA	False	NA	NA	False	NA	NA	NA	24650226	24646035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
96865	chr6	-	5289	23	Antisense	novelGene_ENSMUSG00000034269.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	103	67	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCGGCACTACTGTGTTGG	NA	False	NA	NA	False	NA	NA	NA	113128853	113054474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113054672_113081893_113082082_113082875_113083093_113086835_113086952_113087334_113087485_113087824_113087882_113088314_113088496_113091802_113092045_113092485_113092638_113092965_113093089_113093745_113093848_113094326_113094577_113095216_113095305_113096375_113096633_113097799_113098121_113098526_113098770_113105370_113105501_113114911_113115160_113120571_113121045_113124399_113124699_113126514_113126645_113127057_113127150_113127820
96866	chr3	+	574	1	Antisense	novelGene_ENSMUSG00000070343.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	52	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCATGGTGGAGAACAGGAA	NA	False	NA	NA	False	NA	NA	NA	146544523	146545097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_146544500_146545100
96867	chr16	-	4044	27	NNC	ENSMUSG00000022710.18	novel	4488	31	NA	NA	-3245	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	356.351293084283	1	116	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATAATCCGATGACTGC	NA	False	NA	NA	False	NA	NA	NA	8528036	8507471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_8508751_8509009_8509101_8509218_8509291_8509426_8509540_8510243_8510336_8510877_8510983_8511565_8511644_8511733_8511843_8512293_8512345_8512894_8513038_8513675_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523086_8524458_8524594_8525501_8525611_8526722_8526812_8527902
96868	chr19	-	3273	5	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	-31	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.098751000967	4	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATCTTAGAAATTTATTT	2263	False	NA	NA	False	NA	NA	NA	8796319	8786433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8786696_8786741_8788811_8788963_8789203_8793217_8793401_8795799
96869	chr13	+	2464	7	NNC	ENSMUSG00000113626.2	novel	419	3	NA	NA	9005	462	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	66.016832870278	40	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61961084	62009951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61961188_61987673_61987915_62005782_62005910_62006094_62006156_62007517_62008159_62008492_62009048_62009215
96870	chr4	-	4216	1	Genic_Genomic	ENSMUSG00000003038.16	novel	NA	NA	NA	NA	6	1684	mono-exon	FALSE	NA	NA	NA	NA	NA	1	153	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACTGGCAGTCAATGCCCA	NA	False	NA	NA	False	NA	NA	NA	133694580	133690364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_133690400_133694600
96871	chr19	+	3759	4	NIC	ENSMUSG00000055491.15	novel	5205	14	NA	NA	3	2420	intron_retention	FALSE	canonical	3	329	junction_3	59.7234366801584	1	125	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCACCGACTTTGTCTA	NA	False	NA	NA	False	NA	NA	NA	46045025	46053662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_46045183_46049841_46050730_46050840_46050943_46051050
96872	chr5	+	1663	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	362	14	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCCCACCATCACACCCTG	NA	False	NA	NA	False	NA	NA	NA	142888877	142891214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993
96873	chr10	-	3403	17	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	377	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	153.45520519031	6	59	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175944	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105836_62107367_62107562_62111508_62111644_62116815_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
96874	chrUn_JH584304v1	-	7449	31	Intergenic	novelGene_4587	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	270.584347087722	70	104	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGATGAGAGAGCATCA	NA	False	NA	NA	False	NA	NA	NA	59711	4975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_5083_6910_7010_14082_14201_19241_19346_20218_20376_24795_24959_26983_28146_29421_29515_31427_31496_38110_38244_39079_39165_39435_39611_40108_40185_41047_41122_41972_42076_44211_44315_47519_47676_47921_47997_48579_48654_48765_48944_49049_50275_51406_51539_51644_51729_52287_53770_54335_54480_54720_54868_55111_55249_55464_55702_56985_57152_58563_58836_59591
96875	chr16	-	1791	1	ISM	ENSMUSG00000022521.11	ENSMUST00000023165.9	10820	31	127875	3004	2473	-631	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTCTCCACGGCCCCAA	4676	False	NA	NA	False	NA	NA	NA	3903986	3902195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_3902200_3904000
96876	chr4	+	4321	6	Intergenic	novelGene_2079	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_5	174.614317855095	2	161	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146370017	146806008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146428065_146428160_146797298_146797381_146800390_146800518_146802050_146803953_146804037
96877	chr11	+	1753	5	Antisense	novelGene_ENSMUSG00000098955.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7650	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGCTTTGCACATGCCGG	22	False	NA	NA	False	NA	NA	NA	120236530	120238857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120237362_120237464_120237649_120237740_120238178_120238463_120238701_120238793
96878	chr17	+	1064	2	Intergenic	novelGene_78	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	25	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTGATCCTTCAATGTC	NA	False	NA	NA	False	NA	NA	NA	23095194	23097144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
96879	chr14	-	1937	7	NIC	ENSMUSG00000007589.10	novel	3130	8	NA	NA	-2	1095	intron_retention	FALSE	canonical	3	280	junction_4	42.7034346784112	75	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATAGGTCTGTGTAGGTC	NA	False	NA	NA	False	NA	NA	NA	55919263	55916568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55918360_55918456_55918547_55918681_55918769_55918846
96880	chr10	+	7811	22	ISM	ENSMUSG00000037876.18	ENSMUST00000173689.8	8609	25	31247	2	-743	-2	3prime_fragment	FALSE	canonical	3	46	junction_1	24.578164451408	144	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCTGGATGTTACAGTT	NA	False	NA	NA	False	NA	NA	NA	67052775	67092095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_67052887_67053816_67053961_67054055_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
96881	chr15	-	908	3	NNC	ENSMUSG00000023169.16	novel	6966	16	NA	NA	26	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	107	30	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTCAGGAACAATGGTTT	NA	False	NA	NA	False	NA	NA	NA	96540254	96473876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96474325_96521836_96522051_96540008
96882	chr5	+	250	1	Intergenic	novelGene_902	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	637	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGAGAGTTCAAGAGGGC	NA	False	NA	NA	False	NA	NA	NA	146197788	146198038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198000
96885	chr15	-	10095	7	NNC	ENSMUSG00000038679.17	novel	4436	7	NA	NA	-41	-4	intron_retention	FALSE	non_canonical	0	0	junction_6	8.03464719546263	157	40	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTTTGCTTATAGTAGC	9927	False	NA	NA	False	NA	NA	NA	50753478	50518151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_50525133_50528082_50528206_50685500_50686105_50694224_50695355_50709409_50710339_50752999_50753109_50753259
96886	chr13	-	2782	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	2	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	2646.61587647946	2	27	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTTATGACGTGTGCC	4762	False	NA	NA	False	NA	NA	NA	58550319	58539056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540014_58541027_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58548232_58550206
96887	chr4	-	2550	9	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-31921	63754	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	100.538549820454	1	62	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025968	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913157_146913745_146913948_146914367_146914452_146976159_146976629_146976961_146977116_146978205_146978313_147021745_147022013_147022130_147022550_147025878
96888	chr16	-	8730	20	NIC	ENSMUSG00000022914.18	novel	9843	41	NA	NA	1963	557	combination_of_known_junctions	TRUE	canonical	3	82	junction_11	47.7088933444816	135	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAGCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95834867	95799913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_95804555_95805059_95805909_95806162_95806331_95809036_95809415_95809919_95810769_95811019_95811188_95812909_95813137_95814908_95815076_95817307_95817461_95818780_95818925_95820618_95820661_95820878_95820955_95822415_95822542_95824602_95824724_95824920_95825077_95828544_95828607_95829376_95829489_95831834_95831918_95832726_95832852_95834784
96889	chr11	+	4958	23	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-22	-218	intron_retention	FALSE	canonical	3	2354	junction_10	212.498113749528	1	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332158	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
96891	chrX	+	3966	2	Intergenic	novelGene_4034	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTTTTATTAGAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	116227638	116231727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_116230354_116230476
96892	chr2	-	5664	7	Fusion	ENSMUSG00000085513.2_ENSMUSG00000078865.9	novel	1348	4	NA	NA	-208538	157359	multi-exon	TRUE	non_canonical	0	0	junction_1	475.85210120606	16	127	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177478541	177076114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_177077962_177233523_177234146_177260864_177261191_177261535_177262087_177263226_177263288_177263479_177265551_177478355
96893	chr4	+	2198	5	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	2813	7	NA	NA	3	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	41	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147216497	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147447267_147447280_147599118_147599266_147668064
96894	chr11	-	1274	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	133	226	-1	-2	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	893	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113073	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
96896	chr11	+	1040	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17708.5	8	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATATGGTGTCACTTGTG	NA	False	NA	NA	False	NA	NA	NA	62442329	62444035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443529_62443650
96897	chr17	+	3398	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	188	0	109	0	multi-exon	FALSE	canonical	3	1413	junction_6	319.856779473251	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	608	False	NA	NA	False	NA	NA	NA	56610508	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
96898	chr13	+	5760	8	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-23	158534	intron_retention	TRUE	non_canonical	0	0	junction_3	41.7294492987328	247	100	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACTTGGGTGGTGAGGC	1224	False	NA	NA	False	NA	NA	NA	74547789	74713999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74547912_74553897_74554023_74554221_74557010_74568412_74568874_74674881_74675089_74688471_74690057_74698778_74698942_74713690
96899	chr3	-	7190	26	NNC	ENSMUSG00000039286.13	novel	6875	26	NA	NA	53541	-5	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_25	16.7382675328123	105	45	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGACTTAAGTAGGGTTC	290	False	NA	NA	False	NA	NA	NA	27711006	27470315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_27473752_27480182_27480311_27483012_27483180_27494106_27494320_27505462_27505744_27510597_27510748_27511135_27511250_27512865_27513039_27514093_27514200_27515824_27515944_27517923_27517996_27519850_27519990_27521523_27521611_27523014_27523190_27524370_27524496_27542385_27542440_27545173_27545313_27552925_27552986_27555542_27555695_27562629_27562689_27592097_27592389_27596079_27596324_27610268_27610346_27674753_27674830_27697099_27697239_27710592
96900	chr5	+	2786	4	NIC	ENSMUSG00000023104.10	novel	671	6	NA	NA	3	398	intron_retention	FALSE	canonical	3	1115	junction_1	69.6387503876653	4	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAATGAAGCCAGGCACAG	7566	False	NA	NA	False	NA	NA	NA	134621561	134627580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_134622201_134623062_134624218_134625735_134625850_134626702
96901	chr13	+	5995	15	FSM	ENSMUSG00000021699.18	ENSMUST00000135275.8	2123	15	-141	-3731	-141	1634	multi-exon	TRUE	canonical	1	3	junction_1	7.84544583871199	40	122	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTGGTTTTCTTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	109769172	110091629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_109769445_109876920_109877113_109894110_109894148_109906067_109906142_109909164_109909215_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
96902	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1308	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
96904	chr2	-	4405	24	FSM	ENSMUSG00000027194.17	ENSMUST00000111237.9	4409	24	5	-1	5	1	multi-exon	TRUE	canonical	2	4	junction_8	56.2706462844556	58	30	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTGGTGTAGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	94237019	94131110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
96905	chr11	-	3176	4	NNC	ENSMUSG00000018442.14	novel	1466	7	NA	NA	-7514	-5045	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCTGCCTCTGCGAACG	NA	False	NA	NA	False	NA	NA	NA	70918181	70910436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70911372_70915375_70915536_70915933_70917419_70917585
96906	chr14	+	2908	7	NIC	ENSMUSG00000036291.7	novel	6321	8	NA	NA	-8	267	intron_retention	FALSE	canonical	3	8	junction_2	45.2683357571517	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTCTTTTTGTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	49303943	49325143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_49304322_49311005_49311652_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
96907	chr16	-	564	1	Intergenic	novelGene_3779	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	76	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96908	chr16	-	3223	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	41	220	6	-208	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	1	143	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTTTTATGAGTTCCTCT	8681	False	NA	NA	False	NA	NA	NA	33787367	33775371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
96909	chr8	-	5993	20	ISM	ENSMUSG00000001995.10	ENSMUST00000212168.2	6586	22	77355	-2	309	2	3prime_fragment	TRUE	canonical	3	164	junction_19	25.4968359342739	140	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAAGCAGTGTTGCCTGT	NA	False	NA	NA	False	NA	NA	NA	126219140	126144810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_126146031_126148619_126148702_126149317_126149442_126159916_126160049_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180298_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206892_126207082_126208786_126208921_126217849
96910	chr2	+	4706	4	FSM	ENSMUSG00000034850.16	ENSMUST00000035871.15	4811	4	100	5	35	-5	multi-exon	FALSE	canonical	3	59	junction_1	34.6634613902818	89	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGAGGCTGTTTCCGGTCT	2434	False	NA	NA	False	NA	NA	NA	127089927	127103022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_127090005_127090411_127090730_127097924_127098090_127098876
96911	chrM	+	1626	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	-841	-1	-841	1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	-11	True	NA	NA	False	NA	NA	NA	7765	9391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9400
96912	chr9	+	545	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	48	-103	48	103	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCACTGAAGTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	96777758	96778303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777800_96778300
96913	chr4	+	3813	20	NNC	ENSMUSG00000028580.16	novel	3991	22	NA	NA	54773	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_19	164.172009652872	4	65	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	NA	False	NA	NA	NA	130445489	130508873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082_130507770_130508725
96914	chr11	-	2178	10	Antisense	novelGene_ENSMUSG00000037243.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	58	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCGGGAAGACAGCTGTC	9379	False	NA	NA	False	NA	NA	NA	58205408	58197915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_58198078_58198332_58198590_58199597_58199883_58200215_58200264_58200350_58200997_58201079_58201157_58201240_58201323_58202281_58202395_58204789_58204892_58205002
96915	chr1	+	1127	5	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	5	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	9439.51567547297	3	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454452	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457232_86457481_86457527_86457686
96916	chr3	+	3802	18	NNC	ENSMUSG00000027710.15	novel	3930	18	NA	NA	-2	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	46.5730813143621	2	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAAAGAAATTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	36120218	36146993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132614_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979
96917	chr17	-	929	1	FSM	ENSMUSG00000058542.4	ENSMUST00000078419.2	552	1	-208	-169	-208	169	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	6182888	6181959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_6182000_6182900
96918	chrM	+	1539	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	77	-71	77	71	mono-exon	FALSE	NA	NA	NA	NA	NA	22	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-2	True	NA	NA	False	NA	NA	NA	5404	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_6900
96919	chr2	-	4466	24	NNC	ENSMUSG00000027194.17	novel	4590	25	NA	NA	3	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	57.0437102328263	1	115	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGTTTATGAGCAAAATCA	NA	False	NA	NA	False	NA	NA	NA	94237021	94131130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194844_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
96920	chr17	+	11708	10	Fusion	ENSMUSG00000039218.18_ENSMUSG00000092981.3	novel	459	3	NA	NA	396	-26	intron_retention	FALSE	canonical	3	6	junction_1	66.5999666332916	111	131	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCTGTCAAATAAAAATGAG	NA	False	NA	NA	False	NA	NA	NA	24022603	24043684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_24022972_24025905_24026177_24027039_24027148_24027327_24027493_24028942_24029021_24029386_24029450_24029712_24029746_24030004_24030056_24030612_24031595_24034095
96921	chr18	-	10134	13	Antisense	novelGene_ENSMUSG00000025423.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	96	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAGTGGAACCCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	77240850	77126250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77126674_77184940_77185418_77193498_77193584_77207605_77207657_77207749_77207843_77214552_77214686_77216649_77216758_77217745_77217820_77220786_77220946_77221627_77221764_77223475_77223647_77228630_77228701_77232696
96922	chr16	-	564	1	Intergenic	novelGene_3780	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	294	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
96923	chr11	-	1639	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1252.4809601569	61	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	NA	False	NA	NA	NA	120472390	120468929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469475_120469642_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
96924	chr11	-	2900	16	NIC	ENSMUSG00000020516.16	novel	2771	15	NA	NA	78	0	intron_retention	FALSE	canonical	3	19	junction_9	80.6816515007526	16	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCTGTGGCTTGTCTG	NA	False	NA	NA	False	NA	NA	NA	86435513	86392858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86407569_86408219_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
96925	chr2	-	5165	24	Antisense	novelGene_ENSMUSG00000099091.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.203931119992323	3	66	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGACTTCCGTCGTGGCG	5868	False	NA	NA	False	NA	NA	NA	162926576	162859391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162859452_162864292_162864418_162865267_162865353_162867801_162867882_162869948_162870022_162871652_162871780_162873098_162873190_162875153_162875222_162878476_162878634_162882546_162882634_162884609_162884720_162887122_162887295_162901418_162901513_162903441_162903514_162904368_162904467_162906196_162906419_162910073_162910234_162914541_162914834_162916300_162916722_162917552_162917696_162919706_162919807_162921511_162921627_162922636_162922742_162924468
96926	chr15	+	3677	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	154	23	63	-23	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	1	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCCAGTCTTTAAAGT	NA	False	NA	-31	True	NA	NA	NA	101982361	102005585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
96927	chr3	-	3794	3	FSM	ENSMUSG00000074489.10	ENSMUST00000140259.2	816	3	-2978	0	43	0	multi-exon	FALSE	canonical	3	35	junction_2	5	45	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGCTGGAGTCTGTC	7171	False	NA	NA	False	NA	NA	NA	88280007	88275926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_88276460_88276602_88276636_88276779
96928	chr18	+	1820	12	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	3	-153	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1584.86061644352	1	91	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATACTGTGTGCTAGTTTG	NA	False	NA	NA	False	NA	NA	NA	77861694	77870202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867796_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
96929	chr2	-	1286	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	0	-1126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	4421.64781041808	2	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTTTAACAACTGTCAGA	3736	False	NA	NA	False	NA	NA	NA	154734751	154714463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729722_154730114_154730281_154734609
96930	chr19	-	5334	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	457	201	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACAAGACCGTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	22705271	22699843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22704731_22704824
96931	chr7	-	1420	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	91	0	7	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	5	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126398335	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
96932	chr2	-	2442	5	NNC	ENSMUSG00000015839.7	novel	2475	5	NA	NA	-53	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	240.343504176834	1	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTACTTTGGACTTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	75534886	75505860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_75507529_75507888_75508057_75508831_75508922_75509436_75509774_75534707
96933	chr16	+	5026	7	ISM	ENSMUSG00000035107.14	ENSMUST00000046663.8	6561	16	46701	1	-47	-1	3prime_fragment	FALSE	canonical	3	119	junction_3	11.4709778717132	88	37	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGCTCAACTCTTAAG	NA	False	NA	NA	False	NA	NA	NA	58275506	58290089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_58275640_58276439_58276521_58276645_58276772_58281317_58281412_58283421_58283472_58284552_58284691_58285685
96934	chr4	+	3873	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43263	2578	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	130.419408916856	1	69	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533610	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533956_147535629_147535835_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597139_147597810
96935	chr15	+	6878	38	NNC	ENSMUSG00000037646.11	novel	13757	62	NA	NA	43	-49600	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	16.500348625044	2	61	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCACCCCAAATGCCATCTC	209	False	NA	NA	False	NA	NA	NA	35371754	35794080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_35371845_35372078_35372254_35379034_35379179_35417656_35417778_35422453_35422622_35423261_35423444_35430255_35430431_35438858_35439125_35445715_35445812_35446183_35446307_35446768_35446907_35447830_35447919_35448675_35448868_35452243_35452414_35455102_35455298_35456760_35456886_35472028_35472211_35533441_35533577_35534332_35534507_35572205_35572316_35576524_35576673_35597540_35597669_35607275_35607511_35617743_35617969_35623747_35623952_35639998_35640171_35640675_35640791_35642543_35642611_35646118_35646528_35652400_35652513_35668846_35669051_35671444_35671572_35674954_35675099_35709271_35709960_35745792_35745931_35770601_35771010_35792184_35792388_35793978
96936	chr15	-	3816	28	NNC	ENSMUSG00000022370.14	novel	1223	7	NA	NA	-68484	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	404.049444203019	3	34	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	NA	False	NA	NA	NA	55489628	55397489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653_55421133_55421895_55421977_55426097_55426171_55426330_55426485_55428008_55428065_55429585_55429733_55430571_55430690_55432439_55432554_55434688_55434786_55436289_55436363_55440841_55440961_55449705_55449881_55452051_55452160_55460737_55460899_55466578_55466696_55470037_55470197_55474356_55474430_55480877_55481143_55483031_55483271_55484017_55484131_55488784_55488850_55489530
96937	chr11	+	3708	7	NNC	ENSMUSG00000036819.15	novel	4359	6	NA	NA	264	1866	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	17.591822595235	4	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACAGTCTGTGTGCATTC	9821	False	NA	NA	False	NA	NA	NA	59341210	59351259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_59341339_59341500_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132_59347021_59349197
96938	chr7	-	2511	19	NNC	ENSMUSG00000052296.8	novel	3862	24	NA	NA	7	-1983	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	95.318892975237	7	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCTCAGGTGTGAATGGA	NA	False	NA	NA	False	NA	NA	NA	4661973	4636476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_4636601_4636692_4636824_4638963_4639137_4639214_4639273_4642512_4642611_4642689_4642780_4642891_4642978_4643071_4643188_4643307_4643373_4644044_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646541_4649720_4649940_4661677
96939	chr8	+	3566	23	NNC	ENSMUSG00000031805.18	novel	4009	24	NA	NA	12	-252	intron_retention	FALSE	canonical	0	0	junction_4	54.7852494173296	23	48	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTCTGCGCGGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	72129207	72140948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131853_72131992_72132202_72132489_72133078_72133202_72133283_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683
96941	chr2	-	830	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	243	-73	-243	mono-exon	FALSE	NA	NA	NA	NA	NA	2	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATGACATCAAGAAGGTG	NA	False	NA	NA	False	NA	NA	NA	28824694	28823864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823900_28824700
96942	chr3	+	5777	12	FSM	ENSMUSG00000038495.15	ENSMUST00000035519.12	8043	12	27	2239	6	-2239	multi-exon	FALSE	canonical	3	30	junction_1	14.2242953608394	75	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAATAAAAAAGTTCC	NA	False	NA	NA	False	NA	NA	NA	96011865	96066207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96012132_96043784_96043936_96047727_96047917_96048798_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
96943	chr17	+	4288	10	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	2274	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	55.4505674641727	3	17	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTCCTGCAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	36161666	36170560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354_36169497_36169795
96944	chrM	-	733	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAGGTATAACTTAGTCA	5379	False	NA	NA	False	NA	NA	NA	1023	290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_300_1000
96945	chr1	-	6662	30	NNC	ENSMUSG00000009418.17	novel	9353	31	NA	NA	15	-1995	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	20.1589993711999	138	95	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTTTTATTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	135615828	135368580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135369518_135371371_135371570_135376668_135376788_135377632_135377830_135378307_135378380_135378523_135378679_135379909_135380146_135380542_135380703_135380930_135381027_135381782_135381881_135382171_135382341_135382428_135382622_135382871_135383069_135386393_135386516_135388081_135388194_135388428_135388486_135391459_135391538_135392443_135392497_135393576_135393748_135395378_135395528_135396593_135396636_135397369_135397805_135398217_135398909_135399896_135400195_135400470_135400610_135460086_135460453_135464934_135465038_135530282_135530387_135534899_135535643_135615656
96946	chr5	+	2326	8	NNC	ENSMUSG00000029283.18	novel	2961	12	NA	NA	-1555	5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	102.886702101816	1	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATACTTATTTAAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	107120856	107132303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107123851_107123878_107124495_107124579_107127160_107127311_107130829
96947	chr8	+	3428	4	FSM	ENSMUSG00000110605.2	ENSMUST00000212180.2	1134	4	-25	-2269	-25	2269	multi-exon	FALSE	canonical	3	25	junction_3	15.5777619273972	160	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCGTGGTATC	NA	False	NA	NA	False	NA	NA	NA	129990096	130011594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_129990206_130007503_130007631_130007817_130007879_130008463
96948	chr17	+	2144	5	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	21325	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	115.066285244636	11	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17363001	17367100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17363125_17363366_17363428_17364720_17366130_17366465_17366734_17366817
96949	chr1	-	6781	6	Intergenic	novelGene_380	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	101	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTGTGAAGGCGGCAAA	NA	False	NA	NA	False	NA	NA	NA	63347749	63239398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_63239834_63246673_63246772_63317087_63317141_63319923_63320035_63334072_63334204_63341796
96950	chr4	-	791	2	Genic_Genomic	ENSMUSG00000095042.2	novel	1002	1	NA	NA	-65	-162	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGCGACTTCAACAGCAA	NA	False	NA	NA	False	NA	NA	NA	57372019	57371114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_57371386_57371499
96951	chr4	+	3554	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	9	-13	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	182.320157963951	2	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTAACAAGGTTGACT	NA	False	NA	NA	False	NA	NA	NA	145397263	145430998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397412_145399301_145399395_145422720_145422806_145425813_145425937_145427474_145429383_145429801
96952	chr12	+	5624	14	NIC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-826	-1	intron_retention	FALSE	canonical	3	11	junction_1	278.56098946563	1	136	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAAGTGTGAAGTACA	1626	False	NA	NA	False	NA	NA	NA	109602447	109628142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109604361_109608998_109609087_109609847_109609896_109611695_109611766_109612280_109613186_109615587_109615677_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
96953	chr11	+	1162	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGACGCGGGCTCTCCGC	NA	False	NA	NA	False	NA	NA	NA	33104924	33113076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33105220_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33109999_33110334_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
96954	chr17	-	2395	10	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-224	intron_retention	FALSE	canonical	3	9221	junction_3	841.209975108606	10	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCCTCTGTATAGTAT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
96955	chr17	-	2454	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-1	intron_retention	FALSE	canonical	0	0	junction_5	3150.19722588657	65893	15	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCTGCTCTCCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880660_45880719_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
96956	chr2	+	3660	2	ISM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	94	-2466	94	2466	intron_retention	FALSE	canonical	3	65	junction_1	0	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCCTGTCTTAGCTGCAT	NA	False	NA	NA	False	NA	NA	NA	179056822	179061141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179056894_179057552
96957	chr14	-	4820	21	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-55	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	75.1910234004033	14	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655292	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54654045_54654228_54654944
96959	chr16	+	3007	8	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	17	-1	intron_retention	FALSE	canonical	3	380	junction_7	661.09167600389	7	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6894	False	NA	NA	False	NA	NA	NA	22927348	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
96960	chr4	+	2224	5	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-2	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	43.7342828911141	7	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147576871	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577091_147578832_147578845_147665698_147665826_147667290_147667436_147667929
96962	chr17	+	1363	2	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1218	18	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGACCGGAGCCCGGGA	2519	False	NA	NA	False	NA	NA	NA	36145696	36149057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36146920_36148917
96963	chr3	-	3919	10	FSM	ENSMUSG00000028106.14	ENSMUST00000200164.5	7498	10	-213	3792	18	-3792	multi-exon	FALSE	canonical	3	28	junction_2	34.4318973563113	3	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTTGTACCTTTCCCAAC	9943	False	NA	NA	False	NA	NA	NA	95726157	95671444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_95673733_95679307_95679509_95681423_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95694595_95694697_95697411_95697542_95725858
96964	chr8	-	6609	5	Antisense	novelGene_ENSMUSG00000109987.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	21	45	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTCCCAGAAGCTGTCC	2	True	NA	NA	False	NA	NA	NA	43307052	43072435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_43074176_43074234_43074989_43251701_43252241_43273072_43273407_43303810
96965	chrX	-	3295	5	Fusion	ENSMUSG00000072844.7_ENSMUSG00000086695.2_ENSMUSG00000087263.2	novel	2380	2	NA	NA	27	-1436	multi-exon	FALSE	non_canonical	0	0	junction_2	5.19615242270663	59	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAATCCAGGCCCATCCA	NA	False	NA	NA	False	NA	NA	NA	168769908	168759474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_168760266_168764155_168765249_168766280_168767152_168767934_168768270_168769703
96966	chr13	-	3243	5	Antisense	novelGene_ENSMUSG00000113618.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	8.27647267862342	149	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65705525	65693382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65696241_65697380_65697442_65697641_65697769_65700416_65700494_65705405
96968	chrM	-	805	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGGCAAGGTGTCTTAAG	5379	False	NA	NA	False	NA	NA	NA	1023	218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1000
96969	chr11	+	5709	3	ISM	ENSMUSG00000038013.15	ENSMUST00000037480.9	7011	8	32475	3	4940	-3	3prime_fragment	FALSE	canonical	3	11	junction_1	0.5	103	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTCTTTCTGACTTA	NA	False	NA	NA	False	NA	NA	NA	98786938	98795863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_98787153_98789556_98789659_98790470
96971	chr17	-	2915	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	83	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	180.691068462783	1	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTGAAAAATTGAGTGTAG	2267	False	NA	NA	False	NA	NA	NA	45744580	45702822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744332
96972	chr9	-	7564	28	FSM	ENSMUSG00000046111.19	ENSMUST00000161132.10	7605	28	46	-5	46	0	multi-exon	FALSE	canonical	3	110	junction_2	25.4723282440542	170	90	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTGCTGTCCATCCA	9753	False	NA	NA	False	NA	NA	NA	15269038	15228210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_15228410_15228754_15228890_15228969_15229064_15229214_15229353_15233795_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
96974	chr11	+	2987	13	NIC	ENSMUSG00000040463.17	novel	4448	25	NA	NA	5	3032	intron_retention	FALSE	canonical	3	2360	junction_7	158.214516822362	35	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCACTGATGACGCTGAT	NA	False	NA	NA	False	NA	NA	NA	72332187	72338421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72336113_72336433_72336560_72336719_72337084_72337797_72337895_72337974_72338127_72338378
96975	chr18	-	3265	17	NNC	ENSMUSG00000033382.16	novel	5194	29	NA	NA	3979	-84	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_10	49.3618257740736	101	32	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTAGATGCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	20985845	20950363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_20951369_20952280_20952371_20953934_20954081_20958023_20958126_20961525_20961706_20964506_20964566_20964666_20964736_20966006_20966104_20968002_20968151_20969803_20970222_20974584_20974740_20977180_20977308_20978634_20978710_20979505_20979637_20980174_20980370_20983954_20984064_20985686
96976	chr5	+	5701	27	NNC	ENSMUSG00000045482.17	novel	11581	63	NA	NA	4650	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_23	32.2577682034492	2	45	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTGTGCCCTATTTT	NA	False	NA	NA	False	NA	NA	NA	144761257	144796586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_144761414_144762028_144762232_144762683_144762806_144763329_144763544_144765276_144765457_144767715_144767863_144769257_144769378_144769715_144770004_144770106_144770245_144770966_144771080_144772797_144772934_144773941_144774134_144776210_144776407_144777147_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144790857_144790936_144793696_144793901_144794194_144794390_144795483
96977	chr4	+	2212	5	Genic_Genomic	ENSMUSG00000078498.6_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-141803	182333	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	56	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146914629	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146914697_147073418_147074020_147416441_147416852_147417270_147418031_147600150
96978	chr14	+	2338	14	ISM	ENSMUSG00000054051.8	ENSMUST00000066807.8	8423	21	12727	11218	-9234	-7332	internal_fragment	FALSE	canonical	2	7	junction_7	34.3268315017093	2	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAAAAAAAAGGACTTCCA	NA	False	NA	NA	False	NA	NA	NA	32248204	32291729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_32248836_32263182_32263312_32268701_32268861_32274531_32274668_32279795_32279967_32280384_32280562_32282665_32282783_32284512_32284609_32288199_32288416_32288740_32288852_32289464_32289585_32289943_32290039_32291469_32291616_32291695
96979	chr5	-	1850	4	NIC	ENSMUSG00000029524.17	novel	1794	5	NA	NA	4	1	intron_retention	FALSE	canonical	3	34	junction_2	5.31245915016974	127	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTGGACTGTGAACT	9383	False	NA	NA	False	NA	NA	NA	115622421	115616067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_115616468_115617660_115618585_115620682_115621178_115622390
96980	chr7	-	1330	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	174	7	29	-5	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGAGTCTGTTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	126398252	126394412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
96981	chr16	+	500	1	Intergenic	novelGene_3826	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	228	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211539	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
96982	chr12	-	1880	13	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	1232	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	100.722769962352	1	74	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGTGACATTTCACAATGA	NA	False	NA	NA	False	NA	NA	NA	84660929	84649411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651830_84652636_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84658494_84658546_84659098_84659220_84660678
96983	chr4	-	6882	20	FSM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	25	513	0	-490	multi-exon	FALSE	canonical	1	5	junction_15	17.5783170388094	101	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTTGAAAAGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94867312	94830789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_94835361_94836338_94836397_94836565_94836672_94839162_94839296_94840410_94840600_94841099_94841175_94841734_94841786_94842108_94842164_94845286_94845376_94847149_94847228_94848564_94848669_94849939_94850071_94853365_94854109_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
96984	chr17	+	2413	2	ISM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	6	0	6	0	intron_retention	FALSE	canonical	3	1306	junction_1	0	1	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4653	False	NA	NA	False	NA	NA	NA	29312748	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29312836_29317370
96985	chr16	-	6507	11	Intergenic	novelGene_3651	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	50	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAGAGAAGGGGGATGG	NA	False	NA	NA	False	NA	NA	NA	38065725	37910437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_37910976_37964621_37964814_37991023_37991108_38004794_38004906_38008170_38008302_38011887_38011995_38014256_38014355_38028354_38028451_38040331_38040519_38049037_38049136_38060860
96986	chr5	-	8500	11	ISM	ENSMUSG00000034724.19	ENSMUST00000155901.8	8564	12	27858	10	-5104	-10	3prime_fragment	TRUE	canonical	3	19	junction_9	8.08455317256309	109	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAACCGCACACTGGTCTT	NA	False	NA	NA	False	NA	NA	NA	96281991	96218201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000_96234153_96239442_96239598_96242019_96242178_96246103_96246173_96254074_96254165_96276801_96276888_96278917_96279105_96281869
96987	chr4	+	2957	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-24	722	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	126.646910740057	226	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056408	147075934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383_147074946_147075029
96989	chr13	+	2779	5	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-32	2364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	126.709066368591	10	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTTAATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	62163765	62201164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729_62198864_62200808
96990	chr7	+	641	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	31	7	3	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	10020	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	5953	False	NA	NA	False	NA	NA	NA	45367525	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
96991	chr15	+	3731	20	NNC	ENSMUSG00000022272.18	novel	618	2	NA	NA	1851	-6532	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	170.781047557936	11	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGACAGCGTGGAGTTT	31	False	NA	NA	False	NA	NA	NA	25754915	25807225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_25755172_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126_25800322_25801208_25801367_25803348_25803473_25804384_25804683_25805596_25805805_25806628_25806766_25807142
96992	chr8	-	693	2	Antisense	novelGene_ENSMUSG00000054717.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAAGGAAGCAAGAGTTA	NA	False	NA	NA	False	NA	NA	NA	57967517	57966323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_57966497_57966997
96993	chr19	-	1572	1	Antisense	novelGene_ENSMUSG00000025203.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTTAACCACAGCATCAC	NA	False	NA	NA	False	NA	NA	NA	44295201	44293629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44293600_44295200
96995	chr12	-	6422	20	NNC	ENSMUSG00000113298.2	novel	317	2	NA	NA	-39637	14876	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	37	88	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGGCCACCACGTGACCAA	4593	False	NA	NA	False	NA	NA	NA	65069347	65012527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65014800_65023465_65023625_65024941_65025076_65027354_65027651_65029216_65029481_65030099_65030341_65033166_65033263_65039316_65039413_65042277_65042456_65043665_65043820_65049381_65049535_65053091_65053197_65053646_65053883_65055321_65055481_65057884_65058012_65059606_65059726_65063252_65063443_65065903_65066123_65067084_65067172_65068210
96996	chr2	-	4571	7	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5542	2864	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.1633855724666	15	82	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	177021642	177003448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177005501_177005647_177007703_177008856_177008918_177009124_177009252_177017745_177017791_177017944_177018063_177021529
96997	chr10	+	2635	10	ISM	ENSMUSG00000006731.11	ENSMUST00000006914.11	2395	11	671	-427	37	427	3prime_fragment	FALSE	canonical	3	39	junction_5	12.6383699527165	33	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAATATTATTCTACTGT	1025	False	NA	NA	False	NA	NA	NA	127001764	127008626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
96998	chr2	-	1304	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	213	1025	60	-1017	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	1	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3845	False	NA	NA	False	NA	NA	NA	154734642	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
96999	chr17	-	1700	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	7	781	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	42	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATATTTGTTTGTGGAAT	NA	False	NA	NA	False	NA	NA	NA	36149191	36145715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145888_36145926_36146932_36147054_36147166_36147519_36147629_36148888
97000	chr17	+	1530	12	NNC	ENSMUSG00000116895.2	novel	1684	12	NA	NA	68	-199	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	73.9334076066468	141	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAATTTGTCTTTGAAA	NA	False	NA	NA	False	NA	NA	NA	15230505	15242512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15230534_15231134_15231304_15231891_15232145_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527_15240597_15242176
97001	chrY	-	4075	5	Antisense	novelGene_ENSMUSG00000096768.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	79	154	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGGAAGCAATCCCACTAA	1949	False	NA	NA	False	NA	NA	NA	90810781	90735160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrY_-_90735252_90736410_90736587_90744291_90747787_90749385_90749676_90810758
97002	chr1	-	6839	16	NNC	ENSMUSG00000055322.17	novel	9916	33	NA	NA	3631	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	21.4968731576375	125	26	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGGCCTGGCTTCGTT	2	True	NA	NA	False	NA	NA	NA	74030900	73949390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_74025051_74025095_74025421_74025535_74029469_74029554_74030833
97003	chr17	+	3439	17	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	35	0	at_least_one_novel_splicesite	FALSE	canonical	3	268	junction_4	655.998856706321	1	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	534	False	NA	NA	False	NA	NA	NA	56610434	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617828_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
97004	chr4	+	2510	8	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	410	4	NA	NA	4287	184407	multi-exon	TRUE	non_canonical	0	0	junction_1	74.9816304034474	3	67	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGGTTGTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	146038201	146319732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146038353_146054421_146054480_146058453_146058581_146060726_146061347_146061598_146062076_146062329_146063131_146135044_146135061_146319472
97005	chr13	-	4184	7	Antisense	novelGene_ENSMUSG00000113899.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	79	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTATACAGGATAAGTCAA	NA	False	NA	NA	False	NA	NA	NA	61894690	61796768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_61796888_61803120_61803245_61803429_61803492_61804856_61806008_61891713_61892766_61892930_61893358_61893441
97006	chr3	-	3932	1	ISM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	26945	10	26727	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	83	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCAAAAGCGTTCGGTT	5339	False	NA	NA	False	NA	NA	NA	32392882	32388950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_32389000_32392900
97007	chr4	+	6355	11	NIC	ENSMUSG00000028414.18	novel	6241	10	NA	NA	21	-3	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	17.9398996652713	141	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTTTTGTGTTTGTTTT	38	False	NA	NA	False	NA	NA	NA	53714208	53765782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_53714547_53720006_53720210_53724604_53724743_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
97008	chr16	-	1233	6	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	798	5207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTCCAGTTGCTCTG	NA	False	NA	-30	True	NA	NA	NA	22932696	22927485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22927495_22929336_22929472_22929873_22930011_22930250_22930342_22930565_22930643_22931912
97009	chr17	-	4302	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	240.552099346483	1	158	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCTTGGTTCCACAAG	NA	False	NA	NA	False	NA	NA	NA	28841428	28806627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808348_28808410_28809216_28810174_28810268_28811191_28811262_28813143_28813225_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
97010	chr12	-	3815	5	NNC	ENSMUSG00000073164.12	novel	1033	3	NA	NA	8560	4552	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	9.2736184954957	7	28	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGATAAAAGCAATCTACAG	NA	False	NA	NA	False	NA	NA	NA	23051439	23037772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_23040031_23040199_23041447_23042788_23042850_23043051_23043179_23051317
97011	chr4	+	2789	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5_ENSMUSG00000066007.16	novel	4244	5	NA	NA	18	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	90.4004113652145	7	59	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146093411	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093469_146094927_146095022_146209452_146209546_146214922_146215011_146388486_146388614_146390758_146390904_146391317_146392628_146392795_146393417_146552594
97012	chr4	+	7285	22	NNC	ENSMUSG00000028580.16	novel	4017	22	NA	NA	2	0	intron_retention	FALSE	non_canonical	0	0	junction_21	153.902036161624	11	101	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390698	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082_130507813_130507953
97014	chr10	-	3015	14	ISM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	374	11291	374	4463	5prime_fragment	FALSE	canonical	3	414	junction_11	28.8427690321818	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACTTTCTCAGTCACT	NA	False	NA	NA	False	NA	NA	NA	62175947	62115924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
97015	chr14	-	2724	19	NNC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	124.599915284437	1	109	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACAAACATTCTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	47655636	47625245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645095_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
97016	chr16	+	4502	5	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	-3	0	intron_retention	FALSE	canonical	3	675	junction_4	503.85879718429	1	174	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6059	False	NA	NA	False	NA	NA	NA	22926513	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22929094_22929329_22930343_22930566_22930647_22931100
97017	chr4	-	6940	35	ISM	ENSMUSG00000041936.19	ENSMUST00000180572.2	6891	36	2138	-479	2138	-5	3prime_fragment	FALSE	canonical	3	186	junction_32	92.9535779142407	393	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTAAAATAGGGACTGTG	NA	False	NA	NA	False	NA	NA	NA	156279807	156249755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459_156257588_156257999_156258138_156258241_156258548_156258633_156258740_156258812_156258938_156259027_156259172_156259312_156259478_156259556_156259674_156260675_156260782_156260860_156261010_156261090_156261292_156261412_156261608_156261679_156261899_156262885_156263093_156263239_156263465_156263554_156263780_156263849_156264066_156269544_156269593_156279700
97019	chr14	-	10182	52	NNC	ENSMUSG00000044447.6	novel	9988	52	NA	NA	39514	190	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_51	14.5111817045914	128	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGTTTGTTCCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	68131367	67989393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68131222
97020	chr9	-	4211	8	FSM	ENSMUSG00000032258.16	ENSMUST00000034791.15	4160	8	-51	0	15	0	multi-exon	FALSE	canonical	3	4	junction_7	8.75051018920774	60	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGATCCTTTATTTGAAT	NA	False	NA	NA	False	NA	NA	NA	83323131	83275471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83322961
97021	chr16	+	2621	1	NIC	ENSMUSG00000003233.13	novel	3983	16	NA	NA	14203	-1	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	103	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATTATTATTATTATTAT	NA	False	NA	NA	False	NA	NA	NA	20350138	20352759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_20350100_20352800
97022	chr7	+	925	2	Genic_Genomic	ENSMUSG00000081491.2_ENSMUSG00000078380.2	novel	456	1	NA	NA	-61	39	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	7	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCCCACCATAAATAAATAAG	NA	False	NA	NA	False	NA	NA	NA	33875075	33950957	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_33875494_33950450
97024	chr15	-	1176	9	ISM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	54	213	1	-209	5prime_fragment	FALSE	canonical	3	16287	junction_8	5155.41004067572	7	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGCATTTATGGTA	3572	False	NA	NA	False	NA	NA	NA	79967553	79962204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
97025	chr10	-	1027	3	NNC	ENSMUSG00000090535.2	novel	732	5	NA	NA	4463	652	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1	35	3	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCTGTCCCACCTGGGA	NA	False	NA	NA	False	NA	NA	NA	21919948	21915947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_21916731_21918091_21918233_21919845
97026	chr19	-	1853	9	NNC	ENSMUSG00000010095.14	novel	1819	9	NA	NA	11	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1031.99464024771	139	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGACTTTCATCCTTC	NA	False	NA	NA	False	NA	NA	NA	8691232	8684930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8685459_8685557_8685642_8686368_8686501_8686589_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
97027	chr18	+	1376	2	Antisense	novelGene_ENSMUSG00000049411.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAATAAAGAAGACAGGG	NA	False	NA	NA	False	NA	NA	NA	12095947	12097714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_12096801_12097191
97028	chr13	-	3925	7	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	5	581	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	35.1413811149571	1	57	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTCCTGTGTTTACT	7286	False	NA	NA	False	NA	NA	NA	65496406	65483454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65486229_65486397_65486755_65486838_65487225_65488362_65488424_65488791_65488919_65491542_65491654_65496297
97029	chr7	+	4343	24	NNC	ENSMUSG00000039990.17	novel	4380	24	NA	NA	40	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	50.2676390807482	2	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCTTGGTAGTTCCCACT	NA	False	NA	NA	False	NA	NA	NA	133239461	133273907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273090
97030	chr17	-	661	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4710	22	1175	-22	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	1	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAAGATGCAGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	45879487	45878722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
97031	chr4	-	2550	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-31923	63754	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.834128686216	1	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025970	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913132_146913466_146914016_146914765_146914851_146976979_146977116_146978205_146978333_146982168_146982279_147021745_147022457_147025871
97032	chr8	-	4822	5	Antisense	novelGene_ENSMUSG00000110669.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	345	62	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGGCGGACACTGCAACAG	NA	False	NA	NA	False	NA	NA	NA	20043774	19834734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_19834861_20030544_20030754_20035856_20036159_20037902_20038097_20039783
97033	chr9	-	5879	23	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	-1	-15	intron_retention	FALSE	canonical	3	316	junction_18	103.647736616798	34	76	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATACCTTCAAAACTGGG	9749	False	NA	NA	False	NA	NA	NA	107648151	107617713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107618292_107619590_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
97034	chr3	+	937	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1786.0104814922	4	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3617	False	NA	NA	False	NA	NA	NA	88486974	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494210_88495206
97035	chr9	-	4292	9	NIC	ENSMUSG00000032258.16	novel	4160	8	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	10.5948100502085	49	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGATCCTTTATTTGAAT	NA	False	NA	NA	False	NA	NA	NA	83323143	83275471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_83278109_83280564_83280695_83281678_83281822_83282655_83282750_83283664_83283803_83305075_83305606_83308645_83309015_83310932_83311002_83322961
97036	chr5	-	4575	7	NNC	ENSMUSG00000054280.15	novel	9959	11	NA	NA	-5	7596	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	46.6324279159185	18	75	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATCCCCACAAAAGCACA	7066	False	NA	NA	False	NA	NA	NA	33011587	32985365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_32988896_32989148_32989203_32992959_32993033_32995457_32995587_33001387_33001909_33009225_33009343_33011436
97037	chr1	-	2773	5	NNC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	35	-16	intron_retention	FALSE	canonical	0	0	junction_3	896.781850563447	1	112	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAAATATATCTCACGAG	2373	False	NA	NA	False	NA	NA	NA	93729593	93720313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_93720666_93722447_93722646_93726101_93727652_93728133_93728633_93729419
97038	chr4	+	3856	7	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	28	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	184.890958855934	72	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	145397282	145431007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145401077_145401211_145422720_145422806_145425813_145425941_145427474_145427955_145428205
97039	chr2	+	3711	8	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-1901	980	intron_retention	FALSE	canonical	0	0	junction_5	1359.3167851715	2	75	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACTCTGCCCTCTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	162914763	162925599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162921770_162922092_162922334_162922743_162924469_162924620_162925085
97040	chr4	+	1853	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14336	2912	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	14.5	26	7	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGACTTATCCTGATTT	NA	False	NA	NA	False	NA	NA	NA	145158973	145180370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145176036_145177478_145180016
97041	chr11	+	3514	3	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	2117	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCCAAAACCCCAGAAAATA	4058	False	NA	NA	False	NA	NA	NA	100210811	100215039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100211005_100211491_100214304_100214530
97042	chr13	+	5340	35	NNC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	12	51846	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	99.2016749774877	799	56	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGTTTTTTGAGACA	NA	False	NA	NA	False	NA	NA	NA	97274456	97369549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297569_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107_97313100_97313306_97313409_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534_97334866_97369106
97043	chr11	-	1387	6	FSM	ENSMUSG00000089669.8	ENSMUST00000018896.14	1407	6	-190	210	40	-124	multi-exon	FALSE	canonical	3	10	junction_3	9.09065454189081	32	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCCCACACAGCCCCAAA	4632	False	NA	NA	False	NA	NA	NA	69576570	69573881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69574171_69574679_69574819_69575043_69575160_69575310_69575359_69575485_69575565_69575854
97045	chr11	-	420	6	NNC	ENSMUSG00000071415.7	novel	1059	5	NA	NA	-2	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5443.89806664306	45	1	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCTGAGAGCTGGTCT	NA	False	NA	NA	False	NA	NA	NA	97673210	97668870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97668880_97668947_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
97046	chr13	+	3638	22	NIC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	-3	11	intron_retention	FALSE	canonical	3	649	junction_5	71.7121355524121	233	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATAAATTTCTTGACAAAA	1306	False	NA	NA	False	NA	NA	NA	59733204	59782577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
97048	chr2	-	4337	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-3	2800	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_3	129.471575602095	2	160	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177482114	177470783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177474890_177476043_177476105_177476312_177476398_177482029
97049	chr4	+	3897	10	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	23	63394	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	157.625513382624	258	32	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146695440	146806011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146695757_146697966_146698060_146714050_146714144_146797231_146797381_146800390_146800518_146802050_146802609_146802693_146803236_146803320_146803647_146803814_146804170_146804673
97050	chr10	+	3014	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2580.1176134836	1	84	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCCACATGTGCTCGCA	2196	False	NA	NA	False	NA	NA	NA	81012479	81018322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012541_81013519_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016986_81017061_81017245_81017326_81017460_81017722
97051	chr11	+	1713	5	Antisense	novelGene_ENSMUSG00000087165.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	2.23606797749979	14	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGAACCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	57682238	57687678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_57682282_57682452_57682496_57685438_57685692_57685908_57687088_57687483
97052	chr4	-	2343	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	65	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	592.913726860831	85	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGAGTCTTTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	137523630	137469043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469278_137469389_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483059_137485882_137486044_137523552
97053	chr11	-	3626	6	NIC	ENSMUSG00000039055.5	novel	2444	9	NA	NA	-266	-4	intron_retention	FALSE	canonical	3	186	junction_4	31.7326330454943	5	49	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGGAGCTTGGAGGA	7395	False	NA	NA	False	NA	NA	NA	94541798	94535825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_94536432_94536641_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048
97054	chr4	+	4942	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-501775	182148	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	146.081889251703	3	135	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	146084708	146806000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146084805_146428065_146428160_146616529_146616611_146619877_146620005_146621233_146622137_146622221_146622537_146802592_146803598_146803679
97055	chr12	-	2782	4	Intergenic	novelGene_4322	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	21.249836600679	1	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACTCCTTGTATTTTGT	NA	False	NA	NA	False	NA	NA	NA	22302674	22291531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_22294005_22295404_22295466_22295667_22295795_22302553
97056	chr1	+	2002	7	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	10	0	intron_retention	FALSE	canonical	3	167	junction_3	21.226948281214	13	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	NA	False	NA	NA	NA	75187501	75190886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75187697_75187883_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
97057	chr14	-	6133	52	FSM	ENSMUSG00000044447.6	ENSMUST00000039135.6	9988	52	0	3855	0	-371	multi-exon	FALSE	canonical	3	67	junction_21	9.78869405661972	4	13	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTCTCTCTCCCTAAA	NA	False	NA	NA	False	NA	NA	NA	68170881	67993438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68170740
97058	chr4	+	3851	9	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159947	182326	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	158.229609665827	54	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACGAATAATATGAATTG	NA	False	NA	NA	False	NA	NA	NA	146426536	146806178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146603534_146603615_146797295_146797381_146800390_146800518_146802050_146802588_146803007_146804043_146804377_146804540_146804624
97059	chr2	+	3400	4	Fusion	ENSMUSG00000082724.4_ENSMUSG00000078872.10	novel	948	4	NA	NA	-62	-50	intron_retention	TRUE	non_canonical	0	0	junction_1	8.01387685344754	263	86	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCATCATTATGAAAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	176766050	176834074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_176766152_176776062_176776163_176830790_176832580_176832664
97060	chr16	+	2960	5	Intergenic	novelGene_3849	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	140	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGCCCGGGCCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	78340233	78373586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_78342175_78343395_78343457_78344463_78344979_78372807_78372942_78373277
97061	chr4	+	2195	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-54	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	44.7936627462214	1	39	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209658	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147393098_147393194_147536170_147536264_147661528_147661587_147665698_147665826_147667290_147667444_147668107
97063	chr12	-	2804	1	Intergenic	novelGene_4308	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	44	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATGAATTTATTGGAATT	NA	False	NA	NA	False	NA	NA	NA	19914464	19911660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_19911700_19914500
97064	chr2	+	4093	12	ISM	ENSMUSG00000045106.13	ENSMUST00000111114.8	3944	18	59114	-753	37892	753	3prime_fragment	FALSE	canonical	2	12	junction_9	10.770329614269	22	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGGTTATGTAATTTAGT	NA	False	NA	NA	False	NA	NA	NA	104775782	104830835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_104775801_104781851_104781988_104782213_104782294_104803511_104803641_104804202_104804263_104805900_104806006_104811334_104811446_104815318_104815454_104820212_104820397_104821424_104822898_104824813_104824948_104829307
97065	chr11	-	2793	12	NNC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	1	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	341.599785162609	19	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTACACTCCTCATATTAT	NA	False	NA	NA	False	NA	NA	NA	60702090	60678934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683839_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
97066	chr5	+	4671	16	NIC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-643	16	intron_retention	FALSE	canonical	0	0	junction_1	77.4351054467904	1	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATTAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	121917611	121952977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935849_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121951617_121952400
97067	chr7	+	1879	4	FSM	ENSMUSG00000030604.10	ENSMUST00000205671.2	5329	4	-10	3460	-10	787	multi-exon	FALSE	canonical	2	4	junction_3	14.7648230602334	21	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTGTCATGTATGTGGG	7287	False	NA	NA	False	NA	NA	NA	27506610	27518881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_27506662_27507625_27507753_27510175_27510275_27517279
97068	chr8	-	3157	1	ISM	ENSMUSG00000035569.18	ENSMUST00000172906.8	8481	13	81460	6355	6447	5510	mono-exon	FALSE	NA	NA	NA	NA	NA	1	160	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGAAGCTACAGATCCAG	NA	False	NA	NA	False	NA	NA	NA	123620072	123616915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_123616900_123620100
97069	chr3	+	2197	13	NNC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-9	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	68.8674249716237	9	15	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6623	False	NA	NA	False	NA	NA	NA	108561255	108586156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108561368_108568670_108568812_108569247_108569350_108569824_108569935_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
97070	chr16	+	564	1	Intergenic	novelGene_3781	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
97071	chr4	+	5626	5	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	10	3	intron_retention	FALSE	canonical	2	6	junction_2	73.7733014036921	16	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	145397264	145431014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145406465_145406546_145422720_145422806_145425800
97073	chr2	-	6751	5	Antisense	novelGene_ENSMUSG00000005506.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGGTGTGTTCTGAGCTG	NA	False	NA	NA	False	NA	NA	NA	90849834	90838590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_90838642_90839542_90839659_90840735_90840920_90843039_90843186_90843580
97074	chrX	-	2539	6	Fusion	ENSMUSG00000072844.7_ENSMUSG00000086695.2_ENSMUSG00000087263.2	novel	2380	2	NA	NA	-2	-1436	multi-exon	FALSE	non_canonical	0	0	junction_2	4.8	41	26	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAATCCAGGCCCATCCA	NA	False	NA	NA	False	NA	NA	NA	168769937	168759474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_168760266_168764155_168765249_168766280_168766365_168767072_168767152_168767934_168768193_168769703
97075	chr5	+	3967	1	Intergenic	novelGene_733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGGGCGAAGTGGGT	NA	False	NA	NA	False	NA	NA	NA	85316792	85320759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_85316800_85320800
97076	chr5	-	2515	18	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	-26	233	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	231.505169701706	12	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGTGAGTGGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	31337281	31314554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325691_31330356_31330406_31330726_31330856_31331111_31331293_31331410_31331434_31331575_31331840_31337227
97077	chr17	+	1823	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	2	24	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	11	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGGGAGACTGTGGAGGA	NA	False	NA	-1	True	NA	NA	NA	40157267	40159090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159100
97078	chr17	-	1257	5	NNC	ENSMUSG00000116995.2	novel	1210	4	NA	NA	20	-25	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	1.11803398874989	50	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGTACCTAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	3165050	3162089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_3162848_3162936_3163029_3163562_3163623_3164462_3164621_3164861
97079	chr10	-	6164	11	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-2	-33	intron_retention	FALSE	canonical	3	87	junction_2	54.9949997727066	5	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCCAATTTATCACACCA	NA	False	NA	NA	False	NA	NA	NA	62715795	62648433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930
97080	chr4	-	2689	5	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	70	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGAGGCAGCCAAGAAACAAA	NA	False	NA	NA	False	NA	NA	NA	145178223	145136874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145136997_145138468_145138682_145138752_145138849_145160313_145160382_145176033
97081	chr14	+	1731	1	NIC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	1871	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATACTCTGCAGTTTCTAA	NA	False	NA	NA	False	NA	NA	NA	21894213	21895944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_21894200_21895900
97082	chr8	-	3419	21	Intergenic	novelGene_1751	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	98	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACCACACCACTCTCAG	NA	False	NA	NA	False	NA	NA	NA	111782159	111760825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760895_111763539_111763736_111766697_111766951_111767226_111767371_111768107_111768299_111768869_111769016_111769288_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772154_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780642_111780758_111780842_111781138_111781252_111781648
97083	chr2	-	3782	13	Antisense	novelGene_ENSMUSG00000027678.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTTTGTCTGCGCA	NA	False	NA	NA	False	NA	NA	NA	165912844	165894760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_165894820_165896199_165896589_165896786_165897558_165899006_165899137_165900559_165900756_165901082_165901401_165901618_165901739_165902673_165902847_165907675_165907969_165910245_165910468_165911123_165911299_165911729_165911871_165912049
97084	chr4	-	3064	8	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-52	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	87.1318494218588	35	42	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCAACAAGTTTGCTTT	9471	False	NA	NA	False	NA	NA	NA	147894297	147838441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147839221_147839388_147840218_147840541_147840693_147842158_147842266_147860154_147860286_147891546_147891641_147893153_147893921_147894091
97085	chr8	+	7356	26	Antisense	novelGene_ENSMUSG00000110480.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	91	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGTATTCGGGAAAGTT	NA	False	NA	NA	False	NA	NA	NA	48681828	49007911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_48682237_48685042_48685174_48688324_48689937_48693279_48693575_48707442_48707681_48709866_48710043_48729064_48729937_48730698_48730854_48731989_48732228_48740830_48741073_48745150_48745298_48746541_48746808_48751815_48752080_48752622_48752751_48753791_48754007_48763657_48763805_48788623_48788812_48793988_48794193_48795293_48795489_48795651_48795752_48796266_48796478_48802233_48802444_48820340_48820469_48848470_48848712_48870043_48870281_49007803
97088	chr7	-	3583	21	NNC	ENSMUSG00000032637.16	novel	3894	24	NA	NA	788	-4	intron_retention	FALSE	canonical	0	0	junction_17	265.299166037136	1	77	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTAACTTAACCTGCCTAT	8030	False	NA	NA	False	NA	NA	NA	126100484	126090890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126091388_126091620_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099329_126099426_126099894_126100046_126100274_126100347_126100427
97089	chr3	+	429	1	Intergenic	novelGene_3065	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGGGGCGAGCCCAGAG	NA	False	NA	NA	False	NA	NA	NA	5925398	5925827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925800
97090	chr11	-	3988	12	NNC	ENSMUSG00000040548.17	novel	4934	12	NA	NA	9	-684	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	47.6521486685257	1	173	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTGGTAAAATAGGCATAG	3340	False	NA	NA	False	NA	NA	NA	106503747	106393902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410707_106410841_106420087_106420188_106424696_106424837_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
97091	chr17	+	788	3	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATCAAACTCCTTGA	NA	False	NA	NA	False	NA	NA	NA	45878733	45879921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879054_45879158_45879491_45879785
97092	chr4	-	3482	16	Antisense	novelGene_ENSMUSG00000092862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.498887651569859	15	31	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCACCTGGTCACGTGT	NA	False	NA	NA	False	NA	NA	NA	41012603	40970991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_40971063_40976356_40976852_40976956_40977341_40984890_40985049_40986689_40986770_40988620_40988726_40990787_40990863_40991741_40991883_40993757_40993859_40993962_40994179_40996812_40996925_41003010_41003097_41004326_41004437_41004825_41004943_41009186_41009268_41011453
97093	chr4	+	3073	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	19	-96	1	96	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	2	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAATATTTTTGCAAACCT	913	False	NA	NA	False	NA	NA	NA	145237347	145265854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
97094	chr11	-	6355	23	FSM	ENSMUSG00000036391.17	ENSMUST00000109097.9	6581	23	219	7	32	-7	multi-exon	FALSE	canonical	3	47	junction_21	10.4921261307612	134	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCTTATGAAAATGTTAG	3812	False	NA	NA	False	NA	NA	NA	51647226	51583097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_51586069_51587475_51587580_51591640_51591734_51591984_51592090_51595102_51595241_51597954_51598131_51599761_51599873_51603015_51603190_51604357_51604517_51605951_51606073_51607265_51607473_51608550_51608607_51612641_51612761_51614410_51614524_51617311_51617422_51620278_51620406_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
97095	chr5	+	4219	1	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	46	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACTATCAAGACACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	142887226	142891445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142887200_142891400
97096	chr11	-	2676	5	Antisense	novelGene_ENSMUSG00000020149.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	87	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATGGCCGCCGGCGAAC	NA	False	NA	NA	False	NA	NA	NA	20176810	20151439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_20151653_20165629_20165703_20173084_20173178_20174364_20174497_20174645
97097	chr8	+	7807	51	NNC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-86572	-2773	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	11	123	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGACAAAATGGCGCCCGAG	NA	False	NA	NA	False	NA	NA	NA	96446799	96534056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96447112_96447268_96447388_96448161_96448266_96449911_96450092_96451141_96451292_96452640_96452816_96454209_96454307_96455236_96455364_96455714_96455874_96457038_96457290_96459719_96459955_96460607_96460777_96460868_96460975_96462310_96462456_96462880_96463076_96466437_96466554_96467355_96467466_96467558_96467698_96468408_96468710_96469736_96469863_96470840_96471019_96471190_96471267_96471568_96471682_96472204_96472318_96473598_96473779_96474884_96475028_96475471_96475700_96478360_96478448_96479129_96479421_96479645_96479779_96481592_96481734_96482716_96482922_96483585_96483676_96483763_96483886_96483974_96484120_96486725_96486878_96487129_96487253_96487949_96488070_96489616_96489858_96491083_96491213_96491607_96491779_96496128_96496242_96496372_96496499_96497169_96497339_96498598_96498809_96500063_96500113_96500196_96500275_96501267_96501355_96501907_96502015_96515257_96515535_96533962
97098	chr1	+	2108	5	NIC	ENSMUSG00000026201.13	novel	1500	8	NA	NA	-7	-1	intron_retention	FALSE	canonical	3	176	junction_1	31.068472765812	264	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTATATTTTAGGTCAAT	NA	False	NA	NA	False	NA	NA	NA	75187506	75190882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75190342_75190457
97099	chr10	+	6453	27	ISM	ENSMUSG00000061589.15	ENSMUST00000105336.9	6808	28	9420	12	9163	-12	3prime_fragment	FALSE	canonical	3	61	junction_6	16.3247824092715	134	32	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCACTTGAGCCAGTTC	NA	False	NA	NA	False	NA	NA	NA	80600459	80631283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_80600480_80601996_80602072_80604438_80604503_80606971_80607201_80608937_80609033_80609539_80609603_80613389_80613446_80614096_80614177_80616676_80616746_80617201_80617309_80617976_80618019_80619017_80619126_80619257_80619490_80619706_80619821_80620398_80620491_80620575_80620678_80620883_80621022_80621331_80621458_80621615_80622101_80622187_80622324_80622837_80622985_80623667_80623798_80624348_80624927_80625147_80625354_80626153_80626219_80626444_80627396_80629340
97100	chr8	-	3827	11	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	-3489	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	179.46946815545	4	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	NA	False	NA	NA	NA	81610637	81491068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492013_81492187_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81610540
97101	chr15	+	1940	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	198	-1118	-3	1118	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	11	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATCTCTGGTGTAATAGC	NA	False	NA	NA	False	NA	NA	NA	76788499	76791632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
97103	chr12	+	615	1	Intergenic	novelGene_4449	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	580	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTTTAAGTTCTTACCA	2114	False	NA	NA	False	NA	NA	NA	99611319	99611934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_99611300_99611900
97104	chr13	-	3288	3	Intergenic	novelGene_1446	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCACCCGGAAGATCCC	NA	False	NA	NA	False	NA	NA	NA	66724359	66711973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66712083_66720981_66721107_66721305
97105	chr1	+	1735	2	Antisense	novelGene_ENSMUSG00000103999.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTTCAACTAAGCGGAAGT	NA	False	NA	NA	False	NA	NA	NA	128018213	128030190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_128019747_128029988
97106	chr1	-	1988	4	NNC	ENSMUSG00000026202.14	novel	2840	4	NA	NA	-10	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	133.627176211361	2389	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTGTTTGTGCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	75195897	75191620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_75193238_75193532_75193620_75193855_75194079_75195836
97107	chrM	+	2017	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064340.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	8	411	multi-exon	FALSE	canonical	0	0	junction_1	0	36	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAACAATTTCATATGAAGT	5	True	NA	30	True	NA	NA	NA	1101	3161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3009_3051
97108	chr11	-	3432	15	NIC	ENSMUSG00000051378.11	novel	3326	16	NA	NA	6	-376	intron_retention	FALSE	canonical	3	261	junction_10	31.9272930392842	8	27	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCACAGAAGCAGGGGACT	3730	False	NA	NA	False	NA	NA	NA	102815944	102796730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102807342_102815808
97109	chr9	-	3570	11	Antisense	novelGene_ENSMUSG00000032394.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	66	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCGCCTTTGGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	65094313	65085411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_65085562_65085656_65085795_65087321_65087480_65088415_65088581_65088803_65089054_65089236_65089401_65089981_65090172_65090275_65090385_65091052_65091186_65091307_65091522_65092414
97110	chr14	-	1920	7	NIC	ENSMUSG00000007589.10	novel	3130	8	NA	NA	2	1098	intron_retention	FALSE	canonical	3	280	junction_4	36.8404970409225	178	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGTCTGTGTAGGTCATT	NA	False	NA	NA	False	NA	NA	NA	55919246	55916565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55916867_55916970_55917063_55917322_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
97111	chr5	-	1706	5	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1171	2	238	-2	3prime_fragment	FALSE	canonical	3	4052	junction_3	83.3351666465004	228	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	3899	False	NA	NA	False	NA	NA	NA	142891338	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
97112	chr7	-	2895	22	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-39	-456	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	592.788238489606	3926	12	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165622	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126155924_126155994_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
97113	chr6	+	3679	1	FSM	ENSMUSG00000107310.2	ENSMUST00000202891.2	3039	1	-103	-537	-55	537	mono-exon	FALSE	NA	NA	NA	NA	NA	1	188	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAATAAATAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	36933681	36937360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_36933700_36937400
97114	chr5	+	2874	13	NNC	ENSMUSG00000029283.18	novel	2961	12	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_12	77.6149237510989	321	25	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	107112192	107132298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829_107130921_107131002
97115	chr13	+	3256	7	NNC	ENSMUSG00000095909.3	novel	449	3	NA	NA	-4631	1317	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	98.565826847961	58	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACCTTGACTTAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	66256662	66271967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66256769_66258078_66258269_66267450_66267578_66267777_66267839_66269026_66269602_66269686_66270325_66270408
97116	chr8	+	3776	6	Fusion	ENSMUSG00000071796.14_ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-13	-877	multi-exon	TRUE	non_canonical	0	0	junction_5	531.296677949336	1	99	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCGTATAGAGCATAAAACA	NA	False	NA	NA	False	NA	NA	NA	19834748	20172117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20044712_20171984
97117	chr7	+	1233	11	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	28	-250	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	385.102700587778	34	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTTCTTGCATTCTTTC	NA	False	NA	NA	False	NA	NA	NA	120234426	120258497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250540_120258248
97118	chr8	-	5746	4	FSM	ENSMUSG00000043090.19	ENSMUST00000137573.2	3245	4	16	-2517	16	0	multi-exon	FALSE	canonical	3	29	junction_1	2.44948974278318	61	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGCACTTGTGTCAAAT	6885	False	NA	NA	False	NA	NA	NA	70227545	70213975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_70219428_70220282_70220344_70221770_70221898_70227439
97119	chr6	-	2999	6	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	5	-8	intron_retention	FALSE	canonical	3	1123	junction_1	275.047195950077	5	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAAAATGCCAGGAACTG	NA	False	NA	NA	False	NA	NA	NA	124942248	124935786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124939410_124939584_124939661_124941686
97120	chr17	+	3334	24	NNC	ENSMUSG00000086472.2	novel	682	2	NA	NA	-3336	19910	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	59	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGCAGACTCGGCTCCG	NA	False	NA	NA	False	NA	NA	NA	45971108	45997045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45971907_45972148_45972230_45972379_45972494_45972680_45972850_45973787_45973895_45974432_45974593_45975666_45975736_45975844_45975932_45976090_45976200_45976954_45977106_45977241_45977381_45977503_45977636_45978618_45978747_45980870_45980949_45984084_45984160_45984661_45984770_45984905_45984961_45985048_45985187_45986310_45986349_45988850_45988943_45989888_45989927_45990161_45990242_45990456_45990640_45996840
97121	chr10	-	3165	2	ISM	ENSMUSG00000036112.16	ENSMUST00000181894.2	3034	3	1630	-1324	1561	-13	3prime_fragment	FALSE	canonical	3	2160	junction_1	0	2	70	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGCAATAAATTTTGGA	NA	False	NA	NA	False	NA	NA	NA	93698302	93694363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_93697465_93698238
97122	chrX	+	5175	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	-484	1	-484	-1	multi-exon	FALSE	canonical	3	179	junction_1	98.1322449554681	1	138	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCGTTTGATTGTCCA	NA	False	NA	NA	False	NA	NA	NA	13146724	13160290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
97123	chr6	-	2886	18	Antisense	novelGene_ENSMUSG00000034269.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	20	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCCGGGAATGGCCCG	NA	False	NA	NA	False	NA	NA	NA	113098685	113054572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113054674_113055341_113055425_113081892_113082082_113082875_113083101_113086843_113086952_113087277_113087485_113087588_113087628_113087822_113087882_113088314_113088496_113091802_113092045_113092485_113092638_113092965_113093089_113093745_113093848_113094326_113094577_113095216_113095305_113096375_113096633_113097799_113098121_113098526
97124	chr4	-	3102	7	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	105.051839055244	1	18	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9499	False	NA	NA	False	NA	NA	NA	147894269	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845715_147860154_147860286_147891546_147891641_147893153_147893289_147893953
97125	chr18	-	5877	22	NNC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	31	91432	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.9553924309904	80	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCTTAAAGGCAGGTCGT	NA	False	NA	NA	False	NA	NA	NA	67378317	67266681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_67267040_67267281_67267357_67268382_67268437_67268588_67268708_67324438_67324539_67344118_67344170_67345291_67345370_67346142_67346200_67346553_67346678_67350138_67350270_67351572_67351641_67355637_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
97126	chr5	-	2761	4	NIC	ENSMUSG00000040302.18	novel	2368	5	NA	NA	-35	-5	intron_retention	FALSE	canonical	3	146	junction_1	14.613540144522	13	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACACTGTGTGCTATCTGC	1942	False	NA	NA	False	NA	NA	NA	3646117	3633982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_3634808_3640222_3641816_3645254_3645446_3645965
97128	chr19	+	4393	3	Intergenic	novelGene_1221	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1714	9	97	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTGAGTAAAGGGGT	1180	False	NA	NA	False	NA	NA	NA	22699838	22705271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763_22702555_22703380
97129	chr16	+	2359	1	Intergenic	novelGene_3589	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACCTTGCGAATATGTCAC	NA	False	NA	NA	False	NA	NA	NA	9057441	9059800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_9057400_9059800
97131	chr3	-	1746	11	Antisense	novelGene_ENSMUSG00000105992.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCTCCAGGCGACCAAT	NA	False	NA	NA	False	NA	NA	NA	116342105	116306748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_116306840_116313884_116314009_116316999_116317076_116326902_116327085_116328392_116328516_116332737_116332953_116333301_116333469_116337414_116337493_116339628_116339823_116339942_116340013_116341679
97133	chrX	+	4363	12	Intergenic	novelGene_4004	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAACAAAGCAAGGCCTAT	NA	False	NA	NA	False	NA	NA	NA	104899504	104972911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_104899638_104900063_104900227_104911458_104911529_104918164_104921175_104921966_104922044_104923521_104923621_104927909_104928023_104931315_104931445_104932597_104932651_104934521_104934581_104943486_104943593_104972560
97134	SIRV5	+	526	6	FSM	SIRV5A	SIRV507	533	6	7	0	6	0	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	3641	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGTAAGTGGTCAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	1034	3598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
97135	chr4	-	4290	1	Antisense	novelGene_ENSMUSG00000028601.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGGGAAGCACTGAGTTA	NA	False	NA	32	True	NA	NA	NA	108037406	108033116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108033100_108037400
97136	chr4	-	1074	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	0	-72	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCCTGGACCACCCACC	NA	False	NA	NA	False	NA	NA	NA	91740978	91739904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739900_91741000
97137	chr13	-	10178	2	Intergenic	novelGene_1422	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	34	190	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGGCATTAGCTTCTTT	1018	False	NA	NA	False	NA	NA	NA	65949308	65825937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_65831482_65944674
97138	chr10	+	888	2	Antisense	novelGene_ENSMUSG00000090535.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	1	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAGACAGATGCACACAGG	NA	False	NA	NA	False	NA	NA	NA	21915947	21919950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_21916729_21919843
97139	chr3	+	3117	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-3	99	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	348.101262406342	57	78	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGAGCTTTCATTCGGAA	4853	False	NA	NA	False	NA	NA	NA	34074250	34124570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104307_34108376_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
97140	SIRV1	-	1292	4	FSM	SIRV1A	SIRV102	1300	4	8	0	8	0	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	10	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10358	1006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
97141	chr4	-	3975	8	Antisense	novelGene_ENSMUSG00000083704.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	27	58	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCTGGAATGGCGGAAA	NA	False	NA	NA	False	NA	NA	NA	147145247	147056423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147056561_147057151_147057315_147058402_147058496_147136960_147137049_147140053_147140182_147141714_147143494_147143576_147143846_147143929
97142	chr7	-	1387	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	124	0	11	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	11	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126398302	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
97143	chr6	+	5565	2	Intergenic	novelGene_4257	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	79	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	127491182	127497815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_127494755_127495822
97144	chr9	+	4014	4	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-152	intron_retention	FALSE	canonical	3	18488	junction_2	544.57710401946	43	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCCTTGTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64083499_64084222_64085300_64085504
97145	chr10	+	2442	11	FSM	ENSMUSG00000006731.11	ENSMUST00000006914.11	2395	11	-47	0	-47	0	multi-exon	FALSE	canonical	3	39	junction_6	12.214745187682	43	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	307	False	NA	NA	False	NA	NA	NA	127001046	127008199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
97146	chr17	-	2995	17	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	83	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	232.163062307508	4	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTAGCCTTTTGTTTG	2267	False	NA	NA	False	NA	NA	NA	45744580	45702811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45734330_45734384_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
97147	chr17	+	2445	5	Fusion	ENSMUSG00000095990.2_ENSMUSG00000072761.11	novel	2684	4	NA	NA	-5	119	multi-exon	TRUE	canonical	0	0	junction_4	106.167320772449	13	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17341671	17539892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720_17366659_17539701
97148	chr9	-	753	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	29	-14	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256282	50255529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
97149	chr9	-	3192	4	NNC	ENSMUSG00000032494.13	novel	1290	7	NA	NA	0	-161	intron_retention	FALSE	canonical	0	0	junction_2	2108.30300373441	15	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAACTGGAAGTAAATT	NA	False	NA	NA	False	NA	NA	NA	110775162	110769471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110769888_110771396_110771988_110772040_110772322_110773258
97150	chr4	+	3686	1	FSM	ENSMUSG00000078498.6	ENSMUST00000166764.2	63	1	-2362	-1261	-2362	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147414501	147418187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_147414500_147418200
97151	chr4	-	6801	20	FSM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	25	594	0	-571	multi-exon	FALSE	canonical	1	5	junction_15	17.5783170388094	89	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGCGAATTTCTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	94867312	94830870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_94835361_94836338_94836397_94836565_94836672_94839162_94839296_94840410_94840600_94841099_94841175_94841734_94841786_94842108_94842164_94845286_94845376_94847149_94847228_94848564_94848669_94849939_94850071_94853365_94854109_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
97152	chr1	-	1838	11	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	10	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	800.456020028583	21	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGGACTTCATGCTTT	NA	False	NA	NA	False	NA	NA	NA	20890474	20873238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20887576_20887676_20888016_20888130_20890354
97153	chr5	-	3094	12	NIC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	-10735	43	intron_retention	FALSE	canonical	2	8	junction_6	135.201410819574	2	74	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAGAACTATTTTTGTATA	NA	False	NA	NA	False	NA	NA	NA	123070905	123009310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123070529
97154	chr2	-	4194	20	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	3	-1	intron_retention	FALSE	canonical	3	40	junction_18	59.6726527377872	5	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTTCAGTACTGTCATT	NA	False	NA	NA	False	NA	NA	NA	11782356	11747386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774560_11774743_11782242
97155	chr11	-	1276	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	130	227	0	-3	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	5	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAGCACTGTTTCTATTTG	NA	False	NA	NA	False	NA	NA	NA	33113076	33102513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
97156	chr3	-	2979	6	FSM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	-11	4829	-11	-4825	multi-exon	FALSE	canonical	3	71	junction_5	21.7568380055559	98	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGATACATACCCTC	NA	False	NA	NA	False	NA	NA	NA	32419838	32393769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419652
97157	chr11	+	2857	12	NNC	ENSMUSG00000010554.15	novel	2054	12	NA	NA	-22	792	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	172.887676716215	71	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTATTGATCCTGTTT	8558	False	NA	NA	False	NA	NA	NA	74661719	74709512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74684270_74684381_74686577_74686644_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
97158	chr17	-	3119	7	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	-1	intron_retention	FALSE	canonical	3	75	junction_4	786.026381378019	1	82	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTAGATGTTTTGATTTT	NA	False	NA	NA	False	NA	NA	NA	80514732	80508746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80511662_80511741_80512511_80512690_80512868_80513276_80513458_80514603
97159	chr11	-	2566	2	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTATAAGAAAACAGGTAGG	NA	False	NA	NA	False	NA	NA	NA	57951823	57948087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57948213_57949382
97160	chr4	+	2966	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.962960031426	1	171	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCTTTGATTGTTTCCA	917	False	NA	NA	False	NA	NA	NA	145237351	145265756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257386_145257486_145261385_145261513_145263160
97161	chr4	-	1267	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-74	-191	-74	191	mono-exon	FALSE	NA	NA	NA	NA	NA	7	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740980	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
97162	chr6	-	5019	23	Antisense	novelGene_ENSMUSG00000034269.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	75	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGTACCCGTGAGGTGGGG	NA	False	NA	NA	False	NA	NA	NA	113128852	113054556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113054672_113081893_113082083_113086845_113086952_113087334_113087485_113087588_113087628_113087822_113087882_113088314_113088496_113091802_113092045_113092485_113092637_113092965_113093089_113093745_113093848_113094326_113094577_113095216_113095305_113096375_113096633_113097799_113098121_113098526_113098770_113105370_113105501_113114911_113115160_113120571_113121043_113124398_113124699_113126514_113126647_113127059_113127150_113127820
97163	chr4	+	1257	3	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	108	735	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGCTGTTTGGTTTTTGT	136	False	NA	NA	False	NA	NA	NA	12232940	12234686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12233257_12233514_12233776_12234006
97164	chrM	+	2373	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-791	0	791	mono-exon	FALSE	NA	NA	NA	NA	NA	109	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATCTTCCTAGGACCCC	-3	True	NA	22	True	NA	NA	NA	1093	3466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3500
97165	chr7	-	2177	1	Intergenic	novelGene_2874	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTAGTGCATGGTGATCT	NA	False	NA	NA	False	NA	NA	NA	5868202	5866025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_5866000_5868200
97167	chr2	+	3228	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_5	433.780250306023	2	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	667	False	NA	NA	False	NA	NA	NA	26279373	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281761_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
97168	chr9	+	3936	16	NIC	ENSMUSG00000032235.16	novel	4169	16	NA	NA	10	-44	combination_of_known_junctions	TRUE	canonical	3	18	junction_3	30.4426601261381	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTGTCATTTCAGAAA	4693	False	NA	NA	False	NA	NA	NA	69305228	69340360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_69305336_69306227_69306370_69307758_69307864_69314546_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
97169	chr17	-	2508	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	13	-1	-3	1	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	157	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884184	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
97170	chr6	-	2166	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	51	0	51	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	3523	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9320	False	NA	NA	False	NA	NA	NA	128415589	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
97171	chr18	+	3219	8	NIC	ENSMUSG00000024234.8	novel	2651	9	NA	NA	-6	-6	intron_retention	FALSE	canonical	3	181	junction_2	19.489400572975	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTGAATTGTGATAACAG	-18	True	NA	NA	False	NA	NA	NA	4375585	4397322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_4375779_4379568_4379742_4380653_4380888_4383188_4383414_4386170_4387180_4394973_4395067_4395155_4395230_4396104
97172	chr8	+	780	2	Antisense	novelGene_ENSMUSG00000038143.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	3	junction_1	0	4	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATAAGGGTTCTTTTCTG	3512	False	NA	NA	False	NA	NA	NA	47792357	47796502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_47792453_47795817
97173	chr14	+	2060	13	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	15	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	601.050532863548	1	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAATTAATCCTCAG	NA	False	NA	NA	False	NA	NA	NA	30271102	30295568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287717_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
97174	chr1	+	1948	6	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	65	junction_1	67.8056044881247	29	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTATATTTTAGGTCAAT	NA	False	NA	NA	False	NA	NA	NA	75187486	75190882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75187669_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75190342_75190457
97175	chr5	-	2045	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-8	-96	-8	96	mono-exon	FALSE	NA	NA	NA	NA	NA	6	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833563	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
97176	chr13	+	2789	1	Antisense	novelGene_ENSMUSG00000074830.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	62	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCCAGGGCCAAAAAGGGAG	NA	False	NA	NA	False	NA	NA	NA	66817020	66819809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66817000_66819800
97177	chr6	+	975	1	ISM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	74033	6	7902	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGAACGTCTGGTGTGTTT	209	False	NA	NA	False	NA	NA	NA	91735066	91736041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_91735100_91736000
97178	chr7	-	9443	11	Antisense	novelGene_ENSMUSG00000055320.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	284	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCTAAAAGAGAAATCATAAA	NA	False	NA	NA	False	NA	NA	NA	112505973	112358591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_112358846_112438621_112438684_112441239_112441307_112456001_112456139_112457359_112457408_112458275_112458335_112460635_112460763_112475280_112475454_112490923_112491065_112493516_112493670_112497751
97179	chr5	+	5453	14	NNC	ENSMUSG00000042605.17	novel	4472	25	NA	NA	-677	0	intron_retention	FALSE	canonical	0	0	junction_1	82.5119679323612	67	35	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	121917577	121953013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935415_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447
97180	chr3	+	4375	25	NIC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-4	-14	intron_retention	FALSE	canonical	3	84	junction_18	141.539004979389	34	46	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCTGTTTTGCAGTCGT	NA	False	NA	NA	False	NA	NA	NA	54600251	54636169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54623111_54624058_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
97181	chr2	-	2328	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	208	6	55	2	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	3	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGCTCCATTGCTTTTG	3840	False	NA	NA	False	NA	NA	NA	154734647	154713335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
97182	chr17	-	2489	5	NIC	ENSMUSG00000036820.13	novel	1530	10	NA	NA	-1073	-20	intron_retention	FALSE	canonical	3	307	junction_2	21.6029511872799	7	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGATAAATACAGACAGTGG	NA	False	NA	NA	False	NA	NA	NA	24378082	24374833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24375060_24375544_24377037_24377117_24377207_24377283_24377497_24377613
97183	chr2	+	4070	4	NIC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-5	intron_retention	FALSE	canonical	3	11761	junction_1	2484.64207124934	13	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACTGGGGTCATTCTCC	NA	False	NA	NA	False	NA	NA	NA	29952110	29962584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29952293_29958280_29960368_29960452_29960600_29960930
97184	chr16	-	564	1	Intergenic	novelGene_3782	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	736	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
97185	chr9	-	4910	16	Fusion	ENSMUSG00002076266.1_ENSMUSG00000064145.13	novel	3924	16	NA	NA	-982	0	multi-exon	FALSE	canonical	3	34	junction_15	215.945013577274	25	26	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	108531909	108480140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108530771
97186	chr5	+	1310	5	Antisense	novelGene_ENSMUSG00000047215.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACACAGACACCCGGGTG	3760	False	NA	NA	False	NA	NA	NA	65545713	65548337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_65545787_65545906_65546490_65546815_65546957_65547733_65548198_65548288
97187	chr12	-	1892	4	NNC	ENSMUSG00000041359.15	novel	1398	4	NA	NA	21	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	917.824601980139	2	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGAACTTTAAAATTTCT	NA	False	NA	NA	False	NA	NA	NA	105189031	105183026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_105183321_105183364_105184552_105184917_105185089_105188791
97188	chr4	+	2726	10	Fusion	ENSMUSG00000067919.9_ENSMUSG00000063245.12_ENSMUSG00000086147.3	novel	1275	6	NA	NA	23	199361	multi-exon	FALSE	non_canonical	0	0	junction_1	25.1415744421884	6	56	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146695440	147344612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146695757_146696242_146696355_146740256_146740384_146741834_146741973_146742638_146742714_146913098_146913181_147073432_147073522_147074355_147075871_147144970_147145087_147344456
97189	chr2	+	2999	3	Antisense	novelGene_ENSMUSG00000027342.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	98	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCGCGGCTTCCTAGGC	NA	False	NA	NA	False	NA	NA	NA	132091212	132095097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_132091641_132091711_132093921_132094735
97190	chr11	-	3259	5	Intergenic	novelGene_2549	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	22.5873305195634	3	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGAATTGTGACCTG	NA	False	NA	NA	False	NA	NA	NA	121847547	121832039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121834966_121836089_121836151_121836329_121836457_121842218_121842270_121847453
97191	chr18	+	1607	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	7	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCGCAGAAGTCCACCA	NA	False	NA	NA	False	NA	NA	NA	48179720	48181429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180019_48180120
97192	chr7	-	2705	4	NIC	ENSMUSG00000030614.9	novel	2259	5	NA	NA	-41	-3	intron_retention	FALSE	canonical	3	242	junction_2	12.657891697365	26	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGAATGCATGGAGGTCC	5979	False	NA	NA	False	NA	NA	NA	90125250	90116648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_90118890_90119972_90120167_90121805_90121928_90125102
97193	chr9	+	4404	23	NNC	ENSMUSG00000038535.18	novel	4387	22	NA	NA	3	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	21.6914882190463	17	45	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGATTCCTGTTTGGC	NA	False	NA	NA	False	NA	NA	NA	72182265	72271053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208972_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226005_72226124_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
97194	chr1	-	2340	12	NNC	ENSMUSG00000026234.13	novel	8202	14	NA	NA	-58	248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2126.90124961641	21	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGAGCTTGTGTGGTATG	NA	False	NA	NA	False	NA	NA	NA	86287180	86277968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_86278410_86279951_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
97195	chr5	+	4960	13	FSM	ENSMUSG00000029468.18	ENSMUST00000100737.10	4936	13	-24	0	-24	0	multi-exon	TRUE	canonical	3	11	junction_11	5.09015935135848	36	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGAATTCTCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	122781949	122822352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122795074_122795148_122796770_122796868_122801639_122801721_122802607_122802738_122804206_122804344_122808500_122808592_122811417_122811484_122811728_122811879_122814724_122814827_122818869
97196	chr11	-	3786	9	NIC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-2039	-737	combination_of_known_junctions	FALSE	canonical	3	17	junction_8	20.5060966544099	1	98	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACATTGGATTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	106945755	106924645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945281
97197	chr2	+	1176	1	Antisense	novelGene_ENSMUSG00000027347.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGATTTTATCCTCTGAG	1657	False	NA	NA	False	NA	NA	NA	117127871	117129047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_117127900_117129000
97198	chr4	-	3734	4	Antisense	novelGene_ENSMUSG00000039852.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	28	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCAAAGGGTTGAGGCCC	NA	False	NA	NA	False	NA	NA	NA	150707106	150701723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_150701935_150702860_150703013_150703485_150703660_150703909
97199	chr13	-	2922	7	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	13	-344	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_5	33.4198876253181	22	21	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	7294	False	NA	NA	False	NA	NA	NA	65496398	65484379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65486220_65486639_65487225_65488362_65488424_65488791_65488919_65491576_65491654_65492244_65492376_65496297
97200	chr17	-	2560	11	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-22	1	intron_retention	FALSE	canonical	3	39	junction_10	3285.34709886185	3042	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45883503	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45883359
97201	chr7	-	1562	8	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCAGCACGCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	46505026	46495266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46495341_46497018_46497168_46498394_46498509_46499596_46499780_46500308_46500482_46501299_46501417_46503404_46503529_46504398
97202	chr18	-	940	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-13	38	-13	37	mono-exon	FALSE	NA	NA	NA	NA	NA	224	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTGCTGAAAAAAAAAAAAAA	7410	False	NA	NA	False	NA	NA	NA	61393056	61392116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
97203	chr11	-	3140	3	Intergenic	novelGene_2315	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	40.5	1	112	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446486_57448541_57450415_57450509
97204	chr4	-	2334	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	55	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.152774954745	26	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137523640	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469656_137469779_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
97205	chr14	+	4381	27	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	327.832824693845	2	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGCATTACTTCATTA	1792	False	NA	NA	False	NA	NA	NA	121148596	121185411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163669_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130_121184640_121184758
97206	chr19	+	2818	10	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	3	-4	intron_retention	FALSE	canonical	3	31	junction_5	126.989743923391	16	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATGTAGCTTCTCTGTGC	4142	False	NA	NA	False	NA	NA	NA	41921931	41932539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41929175_41929954_41930079_41930374_41930446_41932020
97207	chr17	-	2493	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	2	25	2	-25	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	4	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGAAGATGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	45884195	45878725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
97209	chr11	-	1724	6	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	13	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCCGACTCTCTCAGCTT	NA	False	NA	NA	False	NA	NA	NA	75656404	75623804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642906_75646398_75646507_75647642_75647847_75650114_75650254_75655443
97210	chrUn_MU069435v1	-	556	1	Intergenic	novelGene_4738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	296	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	556	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_600
97211	chrM	+	580	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	937	28	937	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAACCAACCTATGTAAAAG	21	False	NA	-48	True	NA	NA	NA	6264	6844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6300_6800
97212	chr4	+	2788	8	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	6	104720	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	28.8875370344785	6	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146206906	146319724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207178_146223662_146224065_146250678_146250737_146251579_146251707_146253158_146253308_146253721_146254557_146254712_146255570_146319635
97213	chrM	+	678	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	698	2	698	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	3	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGAATATAGTTTACAAA	260	False	NA	NA	False	NA	NA	NA	10864	11542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10900_11500
97215	chr13	+	3314	3	ISM	ENSMUSG00000097709.9	ENSMUST00000186610.7	630	4	-49	1130	0	75	5prime_fragment	FALSE	canonical	3	18	junction_2	7	26	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCCCAAGCCAAGGTTAAA	NA	False	NA	NA	False	NA	NA	NA	3528254	3538133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_3528391_3529908_3530002_3535048
97216	chr11	-	2859	19	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACGCACCCAGTAGGCGGA	NA	False	NA	NA	False	NA	NA	NA	72342050	72334859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72334945_72335505_72335804_72336001_72336110_72336430_72336556_72336715_72336888_72336983_72337082_72337795_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
97218	chr16	+	525	1	Intergenic	novelGene_3810	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211514	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
97219	chrM	-	2617	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	59	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	9986	False	NA	-1	True	NA	NA	NA	3710	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_3700
97220	chr9	+	2754	3	ISM	ENSMUSG00000015656.18	ENSMUST00000117557.8	2019	9	-26	312	0	-311	intron_retention	FALSE	canonical	3	16906	junction_2	154	23	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTGGAGATCTTTTAAT	2459	False	NA	NA	False	NA	NA	NA	40712571	40716184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_40712645_40713213_40713424_40713713
97221	chr17	+	2718	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	20	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	587.414022964212	2	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGGGCAGTGGTGGCGC	440	False	NA	NA	False	NA	NA	NA	56610340	56630476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629075_56630142
97222	chr14	-	4624	17	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-24	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	70.8421440598744	1	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655261	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54645959_54646506_54654045_54654228_54655113
97223	chr11	+	1336	5	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-48	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1536.77470697562	3	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5358	False	NA	NA	False	NA	NA	NA	52251913	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265157_52274796_52274905_52276409_52276579_52279258
97224	chr5	+	10810	28	NNC	ENSMUSG00000057406.17	novel	7142	23	NA	NA	49	38306	intron_retention	TRUE	non_canonical	0	0	junction_21	118.269008193355	285	63	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGTCCCCGGCGAGGACC	3802	False	NA	NA	False	NA	NA	NA	34000588	34093625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_34001082_34003448_34003612_34011953_34012121_34012597_34013081_34018377_34018523_34022003_34022123_34024917_34025003_34026097_34026223_34036401_34036534_34037395_34037520_34038330_34038532_34039331_34039512_34039870_34040028_34040142_34040349_34042330_34042435_34042725_34042996_34044595_34044713_34048849_34048992_34049283_34049391_34050748_34050954_34052249_34056458_34056627_34058624_34058931_34059002_34059088_34059220_34060714_34060807_34077837_34078000_34079191_34079362_34093369
97225	chr10	-	3446	20	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	391	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	147.362029936602	30	25	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175930	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105200_62105301_62105537_62105626_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
97226	chr9	+	581	2	Genic_Genomic	ENSMUSG00000062933.8	novel	490	1	NA	NA	-44	213	multi-exon	FALSE	non_canonical	0	0	junction_1	0	344	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAAGCACCT	NA	False	NA	NA	False	NA	NA	NA	96777666	96778413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_+_96777893_96778058
97227	chr2	-	4232	10	Fusion	ENSMUSG00000078867.10_ENSMUSG00000083817.2	novel	2135	3	NA	NA	8	174378	multi-exon	TRUE	non_canonical	0	0	junction_1	24.782510758722	77	63	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177090104	176742887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_176742896_176915254_176918442_176918525_176918976_176919057_176919213_176920366_176920428_176920629_176920757_176925417_176925521_176937155_176937209_176941032_176941040_177090023
97230	chr18	-	3571	13	NNC	ENSMUSG00000033323.15	novel	3713	13	NA	NA	-325	1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_12	51.1361879907197	80	15	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTGTTCTCTGGTGT	NA	False	NA	NA	False	NA	NA	NA	80513235	80451178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_80451997_80463657_80463846_80477380_80477544_80489100_80489311_80490638_80490781_80492455_80493464_80494369_80494537_80495519_80495611_80499168_80499320_80501911_80502041_80502416_80502511_80503144_80503229_80512909
97231	chr18	-	7481	15	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	63	-223	intron_retention	FALSE	non_canonical	0	0	junction_14	2621.80258231093	7	126	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATCTCCTTTGTGAATGG	262	False	NA	NA	False	NA	NA	NA	35087347	35070689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35077702_35077781_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35083250_35083308
97232	chr15	-	1503	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	3	0	-3	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	273	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTTTATTTTGCTTGA	2663	False	NA	NA	False	NA	NA	NA	43146115	43113456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
97233	chr15	-	2999	10	NIC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	2	-17	intron_retention	FALSE	canonical	3	5476	junction_5	296.264813142183	42	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGCTTCCACTTATTC	NA	False	NA	NA	False	NA	NA	NA	31601884	31590962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
97234	chr1	-	3042	6	Intergenic	novelGene_381	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGCCAAGTTCAAAGATG	NA	False	NA	NA	False	NA	NA	NA	63344278	63239796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_63239961_63246671_63246773_63317087_63317141_63319923_63320035_63334072_63334204_63341796
97235	chr4	+	1360	8	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-7	3476	multi-exon	FALSE	canonical	0	0	junction_7	152.773274722341	177	5	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311765	145434487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145433992
97236	chr19	+	3854	13	NIC	ENSMUSG00000024985.21	novel	2318	15	NA	NA	1	191	combination_of_known_splicesites	FALSE	canonical	3	18	junction_11	22.7173147376377	54	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATAACATTTTCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	55730252	55921876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_55730963_55731207_55731275_55731504_55731630_55806195_55806298_55896854_55896988_55899010_55899114_55900990_55901078_55905785_55905912_55907316_55907477_55907942_55908051_55912327_55912377_55915115_55915189_55919865
97238	chr19	-	6518	2	Antisense	novelGene_ENSMUSG00000069833.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTCCTGAGACATCAAGG	8189	False	NA	NA	False	NA	NA	NA	8995328	8982573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8982583_8988819
97239	chr18	-	2261	11	NNC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	61	-6	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_4	11.9348229982686	4	9	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAGGAGTTTGGATCTT	NA	False	NA	NA	False	NA	NA	NA	67378677	67358119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360947_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
97241	chr9	+	808	8	ISM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	7742	666	-2656	-666	3prime_fragment	FALSE	canonical	3	619	junction_7	106.961751699056	54	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGAGGGAAGAGGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	108547038	108561174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
97243	chr18	-	3779	32	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	-4	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_25	463.544950264495	2	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGGCCATGTTATTTA	NA	False	NA	NA	False	NA	NA	NA	42395160	42335413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376892_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
97244	chr1	+	3230	8	NIC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	23	2186	intron_retention	FALSE	canonical	3	439	junction_1	55.3865820338081	1088	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGGTCTTGCACGTTTT	5636	False	NA	NA	False	NA	NA	NA	34478954	34485781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483173_34483276_34483351_34483438
97245	chr1	-	4533	14	Fusion	ENSMUSG00000073678.5_ENSMUSG00000104136.2	novel	1408	12	NA	NA	56	2320	multi-exon	FALSE	canonical	0	0	junction_1	11.0002689585193	2	79	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAATCATTGAAATTGTA	NA	False	NA	NA	False	NA	NA	NA	54596730	54555448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_54558125_54559934_54560529_54563474_54563527_54564526_54564574_54567670_54567755_54569275_54569332_54570012_54570119_54571180_54571248_54572577_54572631_54575113_54575272_54582196_54582369_54587097_54587274_54590135_54590290_54596592
97246	chr18	+	2701	11	NNC	ENSMUSG00000024576.15	novel	2259	11	NA	NA	87	774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	639.612038660937	1	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAAAATGCTGCCAGGAG	580	False	NA	NA	False	NA	NA	NA	61688496	61722149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688550_61688832_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
97248	chr4	-	2500	15	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	720	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_14	348.415077639488	4	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116483925	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116483795
97250	chr14	-	4683	2	NNC	ENSMUSG00000021972.15	novel	614	3	NA	NA	3868	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	45	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAACTGAGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	65055877	65049062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_65052252_65054383
97251	chr11	+	7682	25	FSM	ENSMUSG00000020790.15	ENSMUST00000155998.2	8030	25	-17	365	-17	-365	multi-exon	FALSE	canonical	0	0	junction_4	42.0138659320415	178	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCTACAGGCCAAGATTT	NA	False	NA	NA	False	NA	NA	NA	72580814	72662607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_72580861_72602982_72603176_72605190_72605310_72613453_72613590_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
97252	chr11	-	6865	45	NIC	ENSMUSG00000018501.18	novel	8852	45	NA	NA	12	-3348	combination_of_known_junctions	FALSE	canonical	3	28	junction_26	108.157140042388	2	93	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCATGGGAAGTTTTG	NA	False	NA	NA	False	NA	NA	NA	62329329	62211970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62233957_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263901_62264401_62267460_62267588_62269322_62269481_62272233_62272297_62273986_62274202_62275543_62275672_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163
97253	chr4	-	1985	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	-220	0	-220	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	2	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	41098403	41092721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
97254	chr4	+	2486	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	7	182333	multi-exon	FALSE	non_canonical	0	0	junction_1	167.376073558917	535	22	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147390101_147390156_147413438_147413566_147415724_147415863_147416528_147416838_147416922_147418091_147600209
97255	chr2	-	8427	5	Intergenic	novelGene_2621	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	75	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATAATATCCCTTCCCCA	188	False	NA	NA	False	NA	NA	NA	39420945	39253581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_39256440_39256652_39257742_39416268_39417061_39417111_39420705_39420850
97256	chr19	+	4103	25	Intergenic	novelGene_1196	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	23	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAGCGCGTCTCCTCAGA	NA	False	NA	NA	False	NA	NA	NA	5183569	5323003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_5185054_5185147_5185270_5186722_5186947_5188956_5189096_5189309_5189353_5191187_5191233_5191634_5191738_5192271_5192387_5192547_5192702_5193381_5193486_5193802_5193910_5194829_5194970_5195102_5195214_5197153_5197236_5202301_5202395_5202686_5202851_5203693_5203754_5205717_5205802_5205887_5205980_5206387_5206532_5209997_5210122_5210745_5210835_5217950_5218039_5322565_5322657_5322902
97257	chr13	+	3633	6	NIC	ENSMUSG00000021532.12	novel	2501	7	NA	NA	5	-8	intron_retention	FALSE	canonical	3	16	junction_3	56.3971630492173	10	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACAAGTAAATGTTAATT	NA	False	NA	NA	False	NA	NA	NA	68730371	68740389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_68733122_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
97258	chr4	+	2624	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	43.2730863239497	53	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637721	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665698_147665826_147667290_147668230_147668397
97259	chr2	+	255	1	Intergenic	novelGene_2559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAATTATTTTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	5383932	5384187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_5383900_5384200
97260	chrM	+	1219	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	397	-71	397	71	mono-exon	FALSE	NA	NA	NA	NA	NA	17	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-2	True	NA	35	True	NA	NA	NA	5724	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5700_6900
97261	chr16	+	2327	14	ISM	ENSMUSG00000022817.16	ENSMUST00000115028.11	3282	15	15324	586	15312	-393	3prime_fragment	FALSE	canonical	3	195	junction_4	15.3746121325012	24	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCTGGATGGCTGGAGG	NA	False	NA	NA	False	NA	NA	NA	33665358	33769122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_33665442_33685817_33686023_33696171_33696422_33705322_33705492_33719610_33719773_33720879_33720976_33723163_33723254_33730834_33730970_33740154_33740585_33760859_33761083_33764473_33764575_33766860_33766981_33768084_33768252_33769026
97262	chr5	+	382	1	Intergenic	novelGene_948	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	333	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197793	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
97263	chr14	+	1777	12	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	625.919013587419	8	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATGTTTTGAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30271135	30295556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280731_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
97264	chr6	+	6808	2	Intergenic	novelGene_4276	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3129	66	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCAAGGCAAGTCTTATA	NA	False	NA	NA	False	NA	NA	NA	149126914	149168933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_149133529_149168739
97265	chr2	+	3935	24	Antisense	novelGene_ENSMUSG00000081236.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	37	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGGTGTGTCCCTGTGTTT	NA	False	NA	NA	False	NA	NA	NA	59748817	59881056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_59748845_59750637_59750882_59752485_59752564_59753885_59754092_59754996_59755260_59756362_59756504_59762447_59762517_59764016_59764059_59765557_59765627_59767031_59767098_59773107_59773170_59773283_59773375_59778430_59778647_59787977_59788083_59788775_59788833_59790160_59790450_59792364_59792978_59798973_59799365_59799559_59799763_59807702_59807894_59808883_59809049_59831852_59831903_59836387_59836534_59880905
97266	chr15	-	9627	22	NNC	ENSMUSG00000048154.18	novel	19805	55	NA	NA	3443	-605	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	24.6868826883985	119	48	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCGTAAGGACTTAAGTGT	4339	False	NA	NA	False	NA	NA	NA	98750747	98732786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98732863_98733062_98733349_98734955_98735087_98735175_98735313_98737157_98738299_98738441_98738570_98738642_98738776_98739290_98739422_98739619_98739796_98739908_98739985_98740623_98740784_98740939_98741108_98741232_98741374_98741475_98744428_98744523_98744757_98744850_98744922_98745018_98745104_98745238_98745363_98747100_98749083_98749275_98749413_98749487_98749671_98749771
97268	chr1	+	4965	5	Intergenic	novelGene_331	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	82	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAATTGTCTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	7364128	8020230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_7366433_7550267_7550301_7853453_7853465_8017453_8019601_8019760
97269	chr11	-	1868	13	NNC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	58	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	31.5386667441729	35	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGCATTCCATCTCTT	NA	False	NA	NA	False	NA	NA	NA	26543862	26421396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485673_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
97270	chr2	+	2159	4	Fusion	ENSMUSG00000078864.11_ENSMUSG00000078866.11_ENSMUSG00000080709.2	novel	3051	3	NA	NA	-28	89256	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	10	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGCTTCTTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	177156497	177501521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177156642_177376092_177376220_177410168_177410180_177499644
97271	chr17	+	4367	11	NNC	ENSMUSG00000053347.16	novel	1338	6	NA	NA	-35592	18397	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	8.91291198206288	207	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATTGTATAAGATCTCTT	NA	False	NA	NA	False	NA	NA	NA	22145940	22231744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_22147041_22147461_22148471_22149346_22149477_22151976_22152030_22172868_22172968_22173490_22173569_22181234_22181801_22207011_22207083_22209759_22209887_22225286_22225364_22230687
97272	chr10	-	3694	6	FSM	ENSMUSG00000079685.11	ENSMUST00000177585.9	3815	6	65	56	14	-56	multi-exon	FALSE	canonical	3	25	junction_3	15.4324333790883	9	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGGAGGGATTATAGAT	NA	False	NA	NA	False	NA	NA	NA	7423573	7393093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_7395698_7396417_7396553_7397380_7397485_7406339_7406616_7406953_7407209_7423253
97273	chr1	+	3566	1	Antisense	novelGene_ENSMUSG00000047539.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGCGCTCTGAACTCATA	NA	False	NA	NA	False	NA	NA	NA	182142103	182145669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_182142100_182145700
97274	chr14	-	6041	7	Antisense	novelGene_ENSMUSG00000075592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	80	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGCCAGTTCTGTGTCAT	9288	False	NA	NA	False	NA	NA	NA	56111337	56100615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_56101068_56101188_56102591_56103413_56103545_56103665_56103762_56105474_56105579_56105869_56105971_56107582
97275	chr4	-	4105	13	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	630	18874	intron_retention	FALSE	non_canonical	0	0	junction_1	227.770032049873	6	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGAGAATGACACCCGCGGG	7596	False	NA	NA	False	NA	NA	NA	115956625	115932586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_115932804_115936584_115936671_115937743_115937815_115945641_115946766_115950067_115950328_115952071_115952237_115952327_115952427_115952986_115953111_115953338_115953413_115953516_115954569_115954654_115954819_115955681_115955862_115956136
97276	chr8	+	2154	6	NIC	ENSMUSG00000005410.7	novel	2604	17	NA	NA	216	0	intron_retention	FALSE	canonical	3	1485	junction_1	105.833076115173	3	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTGCTGTGTGAATACA	NA	False	NA	NA	False	NA	NA	NA	75847743	75854321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75847906_75848165_75848343_75849619_75849733_75850468_75851572_75852864_75852993_75853850
97278	chr13	-	1231	1	Antisense	novelGene_ENSMUSG00000021488.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCTGGCAGCACCTATGGA	NA	False	NA	NA	False	NA	NA	NA	55461808	55460577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55460600_55461800
97279	chr15	-	1901	4	NNC	ENSMUSG00000022285.18	novel	2285	6	NA	NA	16913	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2004.14276493024	18	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	36775745	36771019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771231_36771513_36773022_36775482_36775579_36775659
97280	chr13	-	4509	33	NNC	ENSMUSG00000021311.10	novel	8294	33	NA	NA	-48	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	46.4450174769856	6	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTTGAATACAAGGAGAAT	5895	False	NA	NA	False	NA	NA	NA	12273047	12201422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_12201978_12202926_12203040_12204232_12204426_12205089_12205291_12208499_12208697_12210123_12210280_12212798_12212875_12213927_12214031_12215082_12215165_12219628_12219750_12220175_12220244_12227273_12227375_12227556_12227665_12230298_12230452_12231695_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242723_12245827_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12264730_12264801_12265487_12265578_12268649_12268865_12272747
97281	chr9	+	643	6	NNC	ENSMUSG00000025794.10	novel	1009	6	NA	NA	3	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6544.36268554853	4	6	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGTGGTAAATCTCATGTG	NA	False	NA	NA	False	NA	NA	NA	120400582	120403490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_120400590_120401206_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
97282	chr7	+	4866	19	Antisense	novelGene_ENSMUSG00000035401.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	74	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGTCTGGGAGTGTAGT	NA	False	NA	NA	False	NA	NA	NA	98238711	98306003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98240099_98243969_98244524_98246242_98246395_98248962_98249001_98249878_98250035_98251789_98251957_98259875_98260071_98262185_98262364_98264681_98264825_98268508_98268673_98270590_98270746_98275670_98275925_98279334_98279613_98286465_98286727_98290698_98290876_98295655_98295731_98297011_98297112_98303950_98304059_98305679
97283	chr5	+	2511	11	ISM	ENSMUSG00000029185.15	ENSMUST00000031080.15	2938	14	54	9475	54	-9475	5prime_fragment	FALSE	canonical	3	10	junction_1	5.2687759489278	11	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGTATAATTATATATT	NA	False	NA	NA	False	NA	NA	NA	65127467	65189754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_65127488_65137050_65137407_65153157_65153246_65163140_65163255_65163376_65163487_65166330_65166466_65172658_65172812_65178944_65179069_65185752_65185845_65187407_65187570_65188597
97284	chr3	-	5831	12	ISM	ENSMUSG00000069094.13	ENSMUST00000091314.11	4454	13	4718	-1568	-49	-6	3prime_fragment	FALSE	canonical	0	0	junction_2	46.0831085384003	105	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAATATCAAAGTCTACC	NA	False	NA	NA	False	NA	NA	NA	19314454	19277277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_19282006_19283851_19283933_19284419_19284517_19285120_19285266_19287263_19287356_19287839_19287972_19290076_19290178_19290607_19290704_19295309_19295374_19297213_19297366_19310941_19311026_19314395
97285	chr5	+	8418	27	NNC	ENSMUSG00000029361.19	novel	4388	28	NA	NA	-25349	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	8.11465545393609	1	167	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGGACTCACTCTG	4033	False	NA	NA	False	NA	NA	NA	118031890	118096890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_118032020_118033845_118033992_118034737_118034901_118035775_118035868_118038535_118038678_118041885_118042026_118043375_118043551_118046054_118046157_118048122_118048318_118048831_118048918_118050787_118050933_118051861_118051967_118052448_118052508_118057460_118057578_118061308_118061484_118063678_118063818_118064517_118064597_118074483_118074678_118076201_118076372_118081189_118081401_118081883_118081972_118083880_118084003_118085484_118085634_118087698_118087894_118090829_118090949_118091859_118095046_118095095
97286	chr15	+	7726	6	NNC	ENSMUSG00000001280.14	novel	7754	6	NA	NA	-85	-16	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	48.7138583977907	296	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTCTCTGGTGTATTGA	NA	False	NA	NA	False	NA	NA	NA	102314682	102344823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102314858_102316206_102316368_102316794_102318155_102334065_102334232_102338391_102338592_102339159
97287	chr9	-	3607	9	Genic_Genomic	ENSMUSG00000101555.2	novel	1569	1	NA	NA	-18281	-1087	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	17	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGTGACCACCTCCGGAC	NA	False	NA	NA	False	NA	NA	NA	69915531	69896768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_69896971_69902701_69902810_69903399_69903465_69904359_69904538_69906373_69906551_69908122_69908228_69909261_69910745_69910847_69910949_69914343
97288	chr11	-	3102	13	NIC	ENSMUSG00000040667.12	novel	2450	17	NA	NA	0	-3	intron_retention	FALSE	canonical	3	678	junction_7	79.5083416308559	821	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAAATTTGACTTTGCT	NA	False	NA	NA	False	NA	NA	NA	70860785	70833910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70834149_70834704_70834824_70834937_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
97289	chr4	-	5947	5	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	113	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTGGTTCCTCAGAGCC	NA	False	NA	NA	False	NA	NA	NA	147421185	147390056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147390228_147398489_147398577_147409228_147409344_147413452_147413565_147415723
97290	chr15	-	2273	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	178	-708	51	708	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	18	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGCTGGATGACCAGG	209	False	NA	NA	False	NA	NA	NA	98832268	98828597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
97291	chr17	+	1128	4	Antisense	novelGene_ENSMUSG00000024121.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	107124	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCAGGCGCTGCGCTC	NA	False	NA	NA	False	NA	NA	NA	24375699	24388371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24375707_24382838_24383582_24383671_24383859_24388180
97292	chr4	-	2220	11	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	45	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	477.944138995343	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCTGAGGCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	137523650	137469057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469997_137471051_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
97294	chr19	-	6090	16	NNC	ENSMUSG00000025085.17	novel	5927	17	NA	NA	0	-6	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	19.9193931188232	63	119	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAGCGCACCAGCGCTCA	NA	False	NA	NA	False	NA	NA	NA	57107456	57021170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030341_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
97295	chr9	-	1105	8	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCGAATGGGAGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	64085801	64082204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64082581_64082863_64083007_64083375_64083497_64084220_64084380_64085000_64085086_64085177_64085300_64085504
97296	chr4	+	2638	5	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	90	1906	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	43.4014688691523	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145136925	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145160315_145160391_145173139_145173342_145176036
97297	chrM	+	1483	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	70	29	70	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	1	79	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTACACCCTCTAACCTA	4	False	NA	-1	True	NA	NA	NA	1163	2646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1200_2600
97298	chr8	-	4919	30	Antisense	novelGene_ENSMUSG00000004565.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	67	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGAGCAACTAAGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	3594255	3566908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_3567142_3567323_3567406_3567555_3567656_3571274_3571415_3571506_3571666_3572095_3572181_3572275_3572403_3572584_3572667_3572756_3572922_3573254_3573340_3573755_3574165_3574249_3574328_3580959_3581168_3581428_3581563_3581637_3582115_3582349_3582426_3584527_3584668_3584828_3584894_3585459_3585633_3585821_3586003_3586542_3586660_3586860_3587018_3587246_3587379_3587453_3587519_3587764_3588084_3591288_3591593_3592297_3592421_3592848_3592950_3593075_3593183_3593960
97299	chr17	+	651	7	NNC	ENSMUSG00000037805.16	novel	830	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3049.70228055133	7	7	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	NA	False	NA	NA	NA	28547556	28550006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548355_28548420_28548497_28549498_28549672_28549803
97301	chr7	+	3575	23	NNC	ENSMUSG00000033790.12	novel	3905	23	NA	NA	11	-4	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_13	20.6189353718316	4	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCATTTTTCTACCTATTT	NA	False	NA	NA	False	NA	NA	NA	55443949	55481190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466252_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980_55476070_55479078_55479180_55480589
97302	chrUn_JH584304v1	-	2401	5	Intergenic	novelGene_4642	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	399.062260180038	2	87	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	59707	52668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55698_59587
97303	chr16	-	4898	31	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	0	28344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2437.71567501672	1	43	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCCGGAACGCGGCATT	NA	False	NA	NA	False	NA	NA	NA	87292747	87251869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255628_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87269057_87269994_87270072_87271467_87271562_87272304_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285808_87287223_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
97304	chr4	+	4014	7	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-43	-4	multi-exon	FALSE	non_canonical	0	0	junction_6	232.803684583289	1461	43	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	147056389	147145247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962_147137048_147140055_147140183_147141715_147143611_147143694
97305	chr4	-	6601	4	Intergenic	novelGene_2127	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	149	121	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTACAGTGTACTTATGT	NA	False	NA	NA	False	NA	NA	NA	147419850	147139652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147142318_147264067_147264192_147343498_147343651_147416190
97306	chr7	+	1219	4	NIC	ENSMUSG00000030703.9	novel	1148	10	NA	NA	-371	-10	intron_retention	FALSE	canonical	3	9	junction_1	1.4142135623731	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAGTAACATAGTTCAT	NA	False	NA	NA	False	NA	NA	NA	126366950	126374807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_126367876_126370159_126370220_126370333_126370386_126374625
97307	chr16	-	4811	30	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	1277	28344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2406.35609978108	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCCGGAACGCGGCATT	NA	False	NA	NA	False	NA	NA	NA	87291315	87251869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255628_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87269057_87269994_87270072_87271467_87271562_87272304_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288185_87288340_87290594_87290675_87291224
97308	chr11	-	932	4	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	18	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1604.11533251197	46	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTCTTCTGACTGGGAA	NA	False	NA	NA	False	NA	NA	NA	120472432	120468975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469527_120470792_120470877_120471007_120471220_120472347
97309	chrX	+	5904	28	NNC	ENSMUSG00000079487.12	novel	6809	45	NA	NA	-1610	-11	intron_retention	FALSE	canonical	0	0	junction_24	36.5395101563929	10	109	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCAAAAGAAGTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	100324691	100341060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100325489_100325655_100325707_100326006_100326126_100326305_100327052_100327273_100327980_100328149_100328295_100328467_100328589_100329066_100329169_100329264_100329379_100329630_100329807_100329973_100330154_100331166_100331239_100331654_100331789_100331955_100332118_100332736_100332849_100333011_100333102_100333623_100333734_100333930_100334067_100334800_100334963_100336149_100336528_100336741_100336893_100337030_100337237_100337401_100337477_100337563_100337791_100339553_100339695_100340198_100340340_100340524_100340607_100340792
97310	chr3	+	5001	23	NNC	ENSMUSG00000025437.16	novel	4183	24	NA	NA	-1	5	intron_retention	FALSE	non_canonical	0	0	junction_4	193.01101004865	4	102	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATGTTGAATTTATTTG	NA	False	NA	NA	False	NA	NA	NA	152052150	152098975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064340_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072462_152073872_152074288_152075913_152076055_152079027_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085251_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
97311	chr11	-	3579	14	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-6256	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	13.159018326365	3	96	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAATATAAATAAATA	8845	False	NA	NA	False	NA	NA	NA	106964287	106933884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106934652_106935317_106935492_106937825_106938028_106945896_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508
97313	chr17	-	863	4	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	20	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5339.55118796411	108	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884159	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45882726_45882838_45884092
97314	chr9	+	4987	17	NNC	ENSMUSG00000032536.13	novel	736	3	NA	NA	-4617	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	76.7193546310186	2	57	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTTTGTCTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	121138686	121303982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_121138789_121193066_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289581_121298050_121298154_121301302
97315	chr4	+	2112	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-32	-7	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	5	22	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAAGTTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147216462	147669648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147534439_147534577_147578832_147578927_147639766_147639810_147665698_147665826_147667290_147667445_147668275
97317	chr5	-	2796	6	ISM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	-41	357	-15	-250	intron_retention	FALSE	canonical	3	934	junction_3	96.8949947107693	7	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGAAGTGAGGACTTAAG	NA	False	NA	NA	False	NA	NA	NA	100186769	100182936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671
97318	chr12	+	2685	4	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-264	18678	multi-exon	FALSE	canonical	3	19	junction_2	10.0332779621949	69	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATACTGGAGAGAAACTCTA	NA	False	NA	NA	False	NA	NA	NA	18437491	18456757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_18437954_18452998_18453126_18453327_18453389_18454722
97319	chr6	+	1812	12	NNC	ENSMUSG00000030007.9	novel	2441	12	NA	NA	-15	-96	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1787.48718310148	1	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTATTTGCTTGGTGTGTTT	5133	False	NA	NA	False	NA	NA	NA	85429018	85445361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443082_85443626_85443704_85444008_85444142_85444560_85444768_85445034
97320	chr5	-	7879	17	ISM	ENSMUSG00000061755.11	ENSMUST00000202908.2	10399	26	22526	193	2253	-193	3prime_fragment	FALSE	canonical	3	71	junction_16	13.9239003156443	58	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAATTTACATTCATTA	NA	False	NA	NA	False	NA	NA	NA	41979132	41945073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_41946293_41951569_41951724_41952224_41952307_41952412_41952463_41955380_41955427_41957114_41957150_41957232_41957309_41958102_41958180_41958504_41958584_41962494_41962575_41964031_41964105_41964514_41964586_41966046_41966108_41967397_41967442_41970464_41970550_41971473_41971539_41973550
97322	chr19	+	2729	10	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	2	3	intron_retention	FALSE	canonical	3	397	junction_4	20.8439232344218	9	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATATGTAGCTTCTCTGT	4141	False	NA	NA	False	NA	NA	NA	41921930	41932537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41929175_41929954_41930079_41930374_41930446_41932020
97323	chr17	-	1581	7	NNC	ENSMUSG00000073436.12	novel	5226	7	NA	NA	2050	1850	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	45	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGGGTCTCGCGAGACAGG	4816	False	NA	NA	False	NA	NA	NA	25111109	25105609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25105732_25106750_25106889_25109253_25109433_25109539_25109728_25109804_25109907_25110034_25110109_25110331
97324	chr17	-	2412	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	7	1	intron_retention	TRUE	non_canonical	0	0	junction_6	4138.71401754316	15	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884190	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881351_45881399_45881493_45881591_45881673_45881943_45882104_45882338_45882546_45882690_45882838_45884092
97325	chr18	+	4936	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26640	1700	at_least_one_novel_splicesite	FALSE	canonical	3	109	junction_13	342.490737576133	5	34	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTGTGTTTTTTAAGT	6445	False	NA	-77	True	NA	NA	NA	77126263	77243196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240336
97326	chr17	-	4980	2	NNC	ENSMUSG00000118642.2	novel	714	4	NA	NA	198	4812	intron_retention	FALSE	non_canonical	0	0	junction_1	0	49	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACATGGTCAAGCGAGACA	NA	False	NA	NA	False	NA	NA	NA	40159520	40154181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_40157910_40158268
97329	chrUn_JH584304v1	-	3066	8	Intergenic	novelGene_4625	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	81	junction_1	332.967608892259	50	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTCGAGAGAATGGCCAA	NA	False	NA	NA	False	NA	NA	NA	59686	52206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53770_54335_54480_54720_54868_55111_55702_56985_57152_57410_57500_58563_58836_59591
97330	chr19	-	1022	4	NNC	ENSMUSG00000071660.11	novel	1585	3	NA	NA	-86	279	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	110.456627988848	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATTCAAGGTCAGTCAGA	2208	False	NA	NA	False	NA	NA	NA	8796374	8788220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_8788281_8788998_8789203_8793217_8793401_8795799
97331	chr16	-	564	1	Intergenic	novelGene_3783	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
97333	chr16	+	591	2	Intergenic	novelGene_3807	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGGCCATCAGGATATTT	NA	False	NA	NA	False	NA	NA	NA	57211475	57225471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57212050_57225454
97334	chr7	-	2662	4	NIC	ENSMUSG00000030614.9	novel	2259	5	NA	NA	0	1	intron_retention	FALSE	canonical	3	242	junction_2	12.657891697365	14	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGAGGTCCCTGT	6026	False	NA	NA	False	NA	NA	NA	90125203	90116644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_90118890_90119972_90120167_90121805_90121928_90125102
97335	chrX	-	8062	26	Intergenic	novelGene_4053	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	30	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATGTTCTATTAAAACCA	NA	False	NA	NA	False	NA	NA	NA	129366583	128702151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_128702176_128704760_128704937_128721985_128722093_128803648_128803787_128839991_128840069_128840151_128840220_128843645_128843783_128844589_128844699_128853419_128853533_128856642_128856762_128857991_128858107_128860790_128860908_128863660_128863732_128867272_128867377_128872024_128872341_128873241_128873357_128948071_128948176_128951115_128951209_128974568_128974671_128989273_128989514_129009998_129010129_129079682_129079810_129159825_129159989_129190601_129190737_129228712_129228809_129361617
97336	chr4	+	3106	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-54	182155	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	143.063137196448	84	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146586429	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146621233_146621624_146803352_146804172_146804673
97337	chr5	-	4139	20	NIC	ENSMUSG00000029512.12	novel	5213	28	NA	NA	993	-3	combination_of_known_junctions	FALSE	canonical	1	2	junction_4	263.206911224503	2	70	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGGTGTCAATTTCA	NA	False	NA	NA	False	NA	NA	NA	110942670	110932356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935528_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612
97338	chr17	-	2704	8	NNC	ENSMUSG00000024006.18	novel	1663	8	NA	NA	0	-182	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	274.784293880246	937	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAGTCTCATATAGTAAAA	NA	False	NA	NA	False	NA	NA	NA	29226925	29198921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_29199712_29200003_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
97339	chr4	+	4203	29	Antisense	novelGene_ENSMUSG00000028465.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	138	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCGAGCCAGGTCCTGAG	NA	False	NA	NA	False	NA	NA	NA	43531521	43543504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43532086_43532191_43532320_43532828_43533012_43533124_43533187_43533301_43533429_43533552_43533681_43533864_43533973_43534392_43534500_43534581_43534761_43535525_43535634_43535734_43535868_43535957_43536135_43536242_43536413_43536525_43536673_43537789_43537903_43537983_43538078_43538187_43538340_43538431_43538601_43538675_43538778_43539100_43539230_43539387_43539553_43539641_43539774_43539969_43540136_43540527_43540673_43542480_43542610_43542708_43542794_43542880_43542968_43543138_43543284_43543435
97340	chrM	+	1966	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	438	-580	438	580	mono-exon	FALSE	NA	NA	NA	NA	NA	9	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	108	False	NA	-1	True	NA	NA	NA	12179	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12200_14100
97341	chr2	-	1014	2	Genic_Genomic	ENSMUSG00000083773.5	novel	1000	1	NA	NA	-15	135	multi-exon	FALSE	canonical	0	0	junction_1	0	1	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCCTACTCTCTTGAAT	NA	False	NA	NA	False	NA	NA	NA	28824636	28823486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_28824349_28824484
97342	chr7	-	1173	3	NIC	ENSMUSG00000050708.17	novel	968	4	NA	NA	1	0	intron_retention	FALSE	canonical	3	69387	junction_1	2507	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109262	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45108085_45108507_45108655_45108953
97344	chr8	-	1151	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	391	383	137	-383	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATACACTTTATCTCCCTG	NA	False	NA	NA	False	NA	NA	NA	46663930	46660216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
97345	chr13	+	3151	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-29	1314	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	91.7234293951115	9	80	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGAACCTTGACTTAGCT	NA	False	NA	NA	False	NA	NA	NA	66261264	66271964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66269602_66269686
97346	chr9	+	4919	20	NIC	ENSMUSG00000044791.17	novel	7442	19	NA	NA	-630	0	combination_of_known_junctions	TRUE	canonical	3	10	junction_11	36.5873144538837	5	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGCTCCCTCAAAATTA	NA	False	NA	NA	False	NA	NA	NA	110379733	110447682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_110380563_110382170_110382303_110385355_110385485_110390183_110390308_110392004_110392083_110393638_110393737_110396775_110396903_110398744_110398880_110401014_110401135_110402679_110403343_110406189_110406407_110419455_110419505_110421466_110421648_110423158_110423829_110428186_110428322_110431190_110431331_110433187_110433300_110443937_110444019_110446501_110446604_110446885
97347	chr12	+	2413	11	NIC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	190.767502473561	1465	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	2865	False	NA	NA	False	NA	NA	NA	109612563	109628150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627141
97348	chr6	-	4394	13	NNC	ENSMUSG00000040669.15	novel	3839	14	NA	NA	618	-770	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	307.867485923553	5	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTCTCTGTTTGGTGAG	8365	False	NA	NA	False	NA	NA	NA	122315205	122296032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122296506_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816
97349	chr16	+	3263	16	Antisense	novelGene_ENSMUSG00000022673.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	171	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGCAGGGTGAAGCGATTC	NA	False	NA	NA	False	NA	NA	NA	15441966	15455189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_15442633_15443424_15443559_15443898_15444128_15445511_15445718_15446453_15446584_15447164_15447531_15448123_15448384_15449561_15449684_15449980_15450202_15452302_15452444_15452914_15453011_15453095_15453190_15453856_15453960_15454050_15454213_15454480_15454652_15455027
97350	chr1	-	5826	33	NIC	ENSMUSG00000055322.17	novel	9916	33	NA	NA	45	-169	combination_of_known_junctions	FALSE	canonical	3	23	junction_32	14.0823124321789	43	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCCCAAAGCCTCTCCAG	NA	False	NA	NA	False	NA	NA	NA	74130465	73953444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_73953834_73955597_73955631_73956024_73956094_73956791_73956961_73957156_73957229_73958812_73958891_73959665_73959759_73960116_73960249_73960925_73961013_73963864_73964929_73967070_73967270_73976383_73976477_73980136_73980213_73981068_73981266_73991579_73993110_74020072_74020190_74021391_74021458_74024177_74024308_74024861_74024938_74025033_74025095_74025421_74025535_74029469_74029554_74030833_74030899_74031258_74031382_74032321_74032373_74034359_74034541_74036207_74036264_74041445_74041497_74042675_74042718_74055303_74055346_74107767_74107806_74118357_74118473_74130331
97351	chr11	-	5429	11	Antisense	novelGene_ENSMUSG00002075227.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACTTGTCCACACAGCG	9205	False	NA	NA	False	NA	NA	NA	98144360	98111914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_98111977_98113450_98113623_98115265_98115455_98120935_98120994_98121807_98121911_98127529_98127601_98131596_98131722_98132523_98132656_98134186_98134397_98136040_98136494_98140506
97352	chr5	+	5692	24	FSM	ENSMUSG00000029502.15	ENSMUST00000031477.9	4805	24	-256	-631	-78	631	multi-exon	FALSE	canonical	3	55	junction_3	18.4207288514263	73	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGCATCCTAAAACCAAATA	NA	False	NA	NA	False	NA	NA	NA	110324488	110371698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_110324789_110329468_110329780_110332203_110332474_110333651_110333765_110335206_110335854_110336528_110336641_110337471_110337779_110340772_110340976_110341484_110341623_110349696_110349859_110350434_110350804_110351585_110351664_110352645_110352910_110353642_110353738_110355421_110355639_110356305_110356450_110357640_110357839_110360096_110360214_110364699_110364840_110365676_110365810_110365959_110366083_110368647_110368810_110369489_110369654_110370773
97353	chr2	+	315	5	ISM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	244	8	203	-5	3prime_fragment	FALSE	canonical	3	3954	junction_4	1482.42763314099	7	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTAAGTCTGCTTTTGCT	NA	False	NA	NA	False	NA	NA	NA	179899413	179900230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
97354	chr12	+	2374	15	NIC	ENSMUSG00000079108.7	novel	3642	16	NA	NA	-28	-413	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	324.243428646454	4	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTCGTTAACTTTCTTTA	NA	False	NA	NA	False	NA	NA	NA	55276924	55309392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
97355	chr19	+	1642	4	NNC	ENSMUSG00000011752.8	novel	1775	4	NA	NA	54	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2845.56922639781	2	75	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTTTGGGCGTAACAACTA	4114	False	NA	NA	False	NA	NA	NA	41900415	41907036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_41900626_41904043_41904319_41905097_41905263_41906044
97356	chr4	+	2425	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-7	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	47.4191040464856	7	25	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147216487	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447362_147536170_147536264_147586007_147586206_147661528_147661587_147665698_147665826_147667290_147667431_147668090
97357	chr9	+	2959	8	ISM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	68	169	-13	-86	intron_retention	FALSE	canonical	3	5755	junction_3	188.439997487426	2	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTACAACCGGATCCGCAG	NA	False	NA	NA	False	NA	NA	NA	108765768	108778522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403
97358	chr19	+	5016	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-46	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	3	176	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1423	False	NA	NA	False	NA	NA	NA	44282468	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44294747_44294821
97359	chr4	+	4029	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159937	182146	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	185.303642705695	14	27	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACAAGGTTGACTTGG	NA	False	NA	NA	False	NA	NA	NA	146426546	146805998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146797295_146797381_146800363_146800518_146802050_146803791_146804209
97360	chr6	+	4120	16	NNC	ENSMUSG00000030096.9	novel	6186	15	NA	NA	37	-767	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	94.2057794877198	5	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACACACAACAAAACCCAG	NA	False	NA	NA	False	NA	NA	NA	91661166	91735280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894_91732938_91734103
97361	chr8	+	4549	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-23	-2112	intron_retention	FALSE	non_canonical	0	0	junction_4	679.067559231039	13	101	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCAGTTAAGTATACCAA	NA	False	NA	NA	False	NA	NA	NA	19834738	20043776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030856_20035860_20036160_20039783_20042916_20043091
97362	chr7	-	1525	10	NNC	ENSMUSG00000052296.8	novel	3862	24	NA	NA	-13	236	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	97.2348563219518	5	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATCGTGAAACATGTAAGC	NA	False	NA	NA	False	NA	NA	NA	4662002	4644058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649942_4661767
97363	chr9	+	5190	6	NNC	ENSMUSG00000097111.2	novel	1264	2	NA	NA	-51020	150287	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGCGCTCCCGGCCGCTCT	52	False	NA	NA	False	NA	NA	NA	56114153	56325351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56114896_56134385_56135131_56148447_56148629_56164810_56168049_56225947_56226107_56325226
97364	chr8	+	7083	27	NNC	ENSMUSG00000031805.18	novel	4019	25	NA	NA	-72	11227	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_25	66.7450771626177	178	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCGAGCTTCCTAGTAGC	NA	False	NA	NA	False	NA	NA	NA	72129123	72154446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683_72140807_72142815_72145798_72145958_72146543_72154360
97365	chr2	+	7278	20	NIC	ENSMUSG00000036617.18	novel	7197	21	NA	NA	-161	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_16	40.2682831275283	395	59	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGTCTGGACTTCCTTT	4635	False	NA	NA	False	NA	NA	NA	20524440	20815335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20810395_20810474_20810585_20812185_20812712_20812836_20813520
97366	chr17	-	5731	25	NNC	ENSMUSG00000035521.14	novel	2249	11	NA	NA	0	44927	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	82.6200200213806	2	73	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGCAGCGCGCATGCGCC	NA	False	NA	NA	False	NA	NA	NA	25459098	25407377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25407461_25408533_25408650_25418740_25418913_25420010_25420148_25424570_25424707_25427060_25427176_25428523_25428613_25429777_25429861_25432020_25432075_25437549_25437726_25447554_25447638_25448209_25448437_25449176_25449384_25449493_25449753_25450687_25453697_25453781_25453864_25453953_25454035_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
97368	chr15	-	4842	4	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-1	intron_retention	FALSE	canonical	3	26994	junction_1	2256.46586994402	160	88	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962628_79962907_79964754_79965096
97369	chr3	-	4747	9	NIC	ENSMUSG00000019338.14	novel	4617	8	NA	NA	4	-1	intron_retention	FALSE	canonical	3	35	junction_8	39.2420374088808	30	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCATTCAGGCTTTTCT	NA	False	NA	NA	False	NA	NA	NA	94922755	94914148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_94915278_94915382_94915525_94915690_94915804_94915895_94916550_94916653_94916831_94917354_94917534_94917655_94919788_94921143_94921240_94922630
97370	chr11	-	3464	14	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	56	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1146.98542367816	17	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8192	False	NA	NA	False	NA	NA	NA	50216444	50185293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188146_50190018_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
97371	chr4	+	1728	7	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-6	2572	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	127.762366220348	13	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147576867	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801_147597502_147599008_147599176_147600071
97372	chr4	-	5996	2	Antisense	novelGene_ENSMUSG00000081048.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	81	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCACAGAGGATCCGACAAT	NA	False	NA	NA	False	NA	NA	NA	73978475	73956947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_73958983_73974514
97373	chr7	-	841	5	NNC	ENSMUSG00000050708.17	novel	503	5	NA	NA	1	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	29659.4391593975	3	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTGAGACAGCAGCTG	NA	False	NA	NA	False	NA	NA	NA	45109262	45107383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107708_45107958_45108085_45108507_45108547_45108611_45108655_45108953
97374	chr5	-	2808	19	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	35	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_17	67.3035320922964	3	34	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	False	NA	NA	False	NA	NA	NA	114911460	114867635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114907677_114907812_114911374
97375	chr8	+	1174	6	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	61	10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	42.5440947723653	4	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTTGTTTGTGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	85635420	85638108	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636400_85636599_85637314_85637811_85637964
97376	chr5	-	4002	6	NIC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	-25	-472	intron_retention	FALSE	canonical	3	208	junction_1	174.069641235915	39	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCGTCATGGTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	121045609	121034790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121040118_121043658_121043948_121045356
97378	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	263	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
97379	chr3	-	1573	14	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	3	-135	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	269.785779580587	3	79	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGGATGACATGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	88821207	88817085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88817218_88817436_88817499_88817604_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819414_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
97380	chr19	-	3207	1	Intergenic	novelGene_1212	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTTTGTTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	15993191	15989984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_15990000_15993200
97381	chr13	+	915	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	35	-12	-35	mono-exon	FALSE	NA	NA	NA	NA	NA	8	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAGCAAAAAAAACAAAAA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
97382	chr12	+	2368	11	FSM	ENSMUSG00000097451.12	ENSMUST00000181253.10	2368	11	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	76.4947056991528	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	2865	False	NA	NA	False	NA	NA	NA	109612563	109628143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
97383	chr4	+	504	4	Antisense	novelGene_ENSMUSG00000088351.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	100	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGCCGGACGGCGCCGG	-2	True	NA	NA	False	NA	NA	NA	3834469	3835599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_3834684_3834935_3835010_3835191_3835291_3835482
97385	chr10	+	5022	1	Intergenic	novelGene_3440	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTAGACTTGAGCTGGA	NA	False	NA	NA	False	NA	NA	NA	59217860	59222882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_59217900_59222900
97386	chrX	+	1066	2	Genic_Genomic	ENSMUSG00000084349.4	novel	1210	1	NA	NA	-25	68	multi-exon	FALSE	non_canonical	0	0	junction_1	0	843	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_+_13069657_13069893
97387	chr2	-	3532	26	FSM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	89	1647	89	-1647	multi-exon	FALSE	canonical	3	167	junction_12	33.8302586451833	2	124	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAATGAGAATGTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	62242486	62162063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
97388	chr9	+	3427	5	NIC	ENSMUSG00000025651.15	novel	1653	13	NA	NA	-1452	-2	intron_retention	FALSE	canonical	3	6057	junction_2	117.120397454927	3	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAACTGTGTTGTCCTTC	NA	False	NA	NA	False	NA	NA	NA	108773780	108778685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108773957_108774427_108776122_108776403_108777702_108778006_108778083_108778502
97389	chr1	+	3527	14	NIC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	96	-5569	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	504.824874432861	2	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAGAAAAGTACCTCCA	NA	False	NA	NA	False	NA	NA	NA	118555771	118607329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_118555833_118559971_118560124_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
97390	chr16	+	4320	11	NIC	ENSMUSG00000022545.14	novel	3480	11	NA	NA	46	598	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	14.2270868416553	87	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTATATGTTGGCATCATG	NA	False	NA	NA	False	NA	NA	NA	12927593	12967196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948887_12950721_12950815_12962264_12962378_12965389
97391	chr4	-	4086	3	Intergenic	novelGene_2125	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	58	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGTAGATGAGATGAGTG	NA	False	NA	NA	False	NA	NA	NA	147008724	147004468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147005783_147005834_147006022_147006139
97392	chr16	-	6258	1	Genic_Genomic	ENSMUSG00000022914.18	novel	NA	NA	NA	NA	11252	588	mono-exon	FALSE	NA	NA	NA	NA	NA	102	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGATTTTTAAACAACTT	9759	False	NA	NA	False	NA	NA	NA	95798961	95792703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_95792700_95799000
97393	chr10	+	3475	11	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	14	15	-14	intron_retention	FALSE	canonical	3	5618	junction_10	487.977509727651	495	34	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTGATCCACATGTGCT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637
97395	chrM	-	1026	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGTTTCTGTAGTTGAA	1018	False	NA	NA	False	NA	NA	NA	15170	14144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14100_15200
97396	chr13	-	4187	5	Fusion	ENSMUSG00000114793.2_ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7253	126273	multi-exon	TRUE	non_canonical	0	0	junction_1	49.9699909945959	86	22	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTCCTTGTATGTTGTTA	1341	False	NA	NA	False	NA	NA	NA	67010188	66867614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66867711_66990696_66994500_67002549_67002611_67002809_67002937_67010088
97397	chr2	-	10684	25	Antisense	novelGene_ENSMUSG00000043535.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	272	45	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGCAAGGCGACGCCCAA	NA	False	NA	NA	False	NA	NA	NA	29072480	29015178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29015568_29016889_29017074_29020189_29020403_29023933_29024042_29029227_29029450_29030278_29030400_29033900_29034070_29034185_29034276_29034612_29038734_29040019_29040120_29043949_29044109_29046999_29047233_29048109_29048276_29048850_29049008_29051481_29051586_29051761_29051875_29052986_29053060_29054411_29054561_29056276_29056387_29061173_29061359_29062323_29062421_29063568_29063732_29066886_29066987_29067525_29067614_29069410
97398	chr7	-	3513	2	NNC	ENSMUSG00000030980.18	novel	958	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	84	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCATGCCTAAAGCACAAA	NA	False	NA	NA	False	NA	NA	NA	118454907	118441459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_118444911_118454845
97399	chr4	+	3456	11	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	14	182328	multi-exon	TRUE	non_canonical	0	0	junction_1	15.6	3	134	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216508	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147219028_147219122_147233147_147233279_147316805_147316901_147337725_147337859_147341252_147341380_147342850_147342996_147343402_147343632_147416344_147418026_147600143
97401	chr19	+	2942	10	FSM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	127	-312	80	310	multi-exon	FALSE	canonical	3	91	junction_1	107.147988119351	719	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATAATCCCAGACTCCTAA	NA	False	NA	NA	False	NA	NA	NA	38043616	38063181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
97402	chr10	+	1161	4	Antisense	novelGene_ENSMUSG00000019797.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4258	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCCGACCGCAGGCGGG	NA	False	NA	NA	False	NA	NA	NA	43400826	43416963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_43401401_43406589_43406667_43408671_43409162_43416943
97403	chr6	-	3340	19	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	-6	9	intron_retention	FALSE	canonical	3	759	junction_15	51.987771591613	1146	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGGCTGACTGGTTTCAG	7899	False	NA	NA	False	NA	NA	NA	124806404	124791991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124792623_124793946_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
97404	chr7	-	1537	6	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCATCATCTCGCCCTTG	NA	False	NA	NA	False	NA	NA	NA	46505026	46498463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46498513_46499599_46499937_46500199_46500482_46501299_46501417_46503404_46503529_46504398
97405	chr5	+	1703	14	NNC	ENSMUSG00000039682.13	novel	2267	13	NA	NA	-13	-62	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	715.629751218046	3010	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAATCTGATCCAATGCA	NA	False	NA	NA	False	NA	NA	NA	45650832	45669971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222_45669498_45669882
97406	chr17	-	7982	21	ISM	ENSMUSG00000024241.8	ENSMUST00000068714.7	8436	22	19950	293	19950	-293	3prime_fragment	FALSE	canonical	3	87	junction_5	16.5785252661387	118	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAGAAAAATACCTTAT	NA	False	NA	NA	False	NA	NA	NA	80767448	80701472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_80706102_80707169_80707289_80714119_80714388_80715674_80715792_80715996_80716170_80721027_80721146_80722371_80722535_80726437_80726558_80727691_80727915_80730110_80730215_80730544_80730668_80731558_80731641_80740925_80741582_80742323_80742452_80752858_80752958_80753030_80753142_80756686_80756831_80759409_80759620_80761184_80761350_80762480_80762613_80767350
97407	chr7	+	1076	8	NIC	ENSMUSG00000030588.13	novel	1153	8	NA	NA	-23	-2	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	515.665569523346	8	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCAGCCTCCACTTCTGA	6212	False	NA	NA	False	NA	NA	NA	28937928	28946952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_28937989_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
97408	chrX	+	8521	6	Intergenic	novelGene_4048	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	69	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	122307373	122755359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_122310478_122518880_122518890_122636355_122636360_122698872_122698880_122748424_122752038_122753575
97409	chr5	-	2542	17	ISM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	6129	1411	486	28	3prime_fragment	FALSE	canonical	3	433	junction_16	65.0427443589983	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTAAATCCCTCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	31331359	31314759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111
97410	chr2	+	4069	3	NIC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	13	2542	intron_retention	FALSE	canonical	3	19	junction_2	51.5	2	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAACTTGCTTCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	177190020	177204098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_177190111_177198701_177198829_177200246
97411	chr3	-	7025	12	FSM	ENSMUSG00000027993.17	ENSMUST00000054990.11	3816	12	65	-3274	65	-7	multi-exon	TRUE	canonical	2	9	junction_11	26.7448921515557	87	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCTGCAGACTGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	84178033	84067754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84098544_84099387_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84177940
97412	chr13	-	2531	10	Fusion	ENSMUSG00000114353.2_ENSMUSG00000074830.5_ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7253	47	multi-exon	TRUE	non_canonical	0	0	junction_1	42.3425186885344	2	115	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GACAAAAAAAAAAACACATA	1341	False	NA	NA	False	NA	NA	NA	67010188	66817944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66818145_66818231_66818506_66819179_66819299_66941281_66941544_66998877_66999435_66999516_67000032_67000627_67000944_67002549_67002611_67002809_67002937_67010088
97413	chr15	+	3130	13	NNC	ENSMUSG00000022619.6	novel	5558	12	NA	NA	285	-2029	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_5	25.6074804609035	78	13	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGACCCTGGCTGTTT	1543	False	NA	NA	False	NA	NA	NA	89338400	89346642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_89338489_89339386_89339493_89340727_89341007_89341122_89341220_89341337_89341987_89342100_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
97414	chr4	-	2587	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	67	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	593.426116340995	960	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCAGAGCTGAGTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	137523628	137469047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137481475_137481612_137482395_137482512_137482940_137483061_137485882_137486044_137523552
97415	chr14	+	5150	1	Antisense	novelGene_ENSMUSG00000060373.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	102	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGAGGCAGGTGGATTTG	5375	False	NA	NA	False	NA	NA	NA	52333484	52338634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_52333500_52338600
97416	chr13	+	806	6	Genic_Genomic	ENSMUSG00000048603.9	novel	883	1	NA	NA	-6525	-380	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGACCAGCTGAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	98446404	98453432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_98446710_98447488_98447548_98449601_98449800_98450144_98450260_98452736_98452807_98453373
97417	chr17	-	1159	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-60	3017	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGCTCACCTAGGGACGGT	NA	False	NA	NA	False	NA	NA	NA	35821508	35816956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820120_35820303_35820434_35820875_35821037_35821184
97418	chr4	+	2478	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	7	182330	multi-exon	FALSE	non_canonical	0	0	junction_1	167.376073558917	32	21	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147216501	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147395015_147395065_147413438_147413566_147415724_147415863_147416528_147416838_147416922_147418091_147600209
97419	chr4	+	3184	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	15	-1901	multi-exon	FALSE	non_canonical	0	0	junction_2	39.1560978648282	47	45	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206915	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146207051_146207223_146207708_146207846_146291416_146291514_146368119_146368239_146384279_146384431_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393458_146552638
97420	chr10	+	336	1	FSM	ENSMUSG00000111897.2	ENSMUST00000218521.2	251	1	-33	-52	-33	52	mono-exon	FALSE	NA	NA	NA	NA	NA	12	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGGGGGGGAAGAAAAGTG	7885	False	NA	NA	False	NA	NA	NA	79724512	79724848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79724500_79724800
97422	chr6	-	3877	23	NNC	ENSMUSG00000063884.7	novel	2666	25	NA	NA	0	-1	intron_retention	FALSE	canonical	0	0	junction_13	277.394354843738	3	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTTTGTAAGCGTGTACA	3048	False	NA	NA	False	NA	NA	NA	71885734	71857622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71872678_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884709_71884777_71884831_71885617
97423	chr18	+	2940	6	NNC	ENSMUSG00000024400.17	novel	4575	22	NA	NA	0	-33	intron_retention	FALSE	non_canonical	0	0	junction_2	176.761986863692	2	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTATGAATACAGAATGTGA	5655	False	NA	NA	False	NA	NA	NA	31937150	32040417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_31937308_31960314_31960360_32006553_32006654_32033907_32035731_32037288_32037505_32039818
97424	chr14	+	2030	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-17	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	578.538742802137	14	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAATTAATCCTCAG	NA	False	NA	NA	False	NA	NA	NA	30271120	30295568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287495_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
97425	chr4	-	7925	8	Intergenic	novelGene_2135	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	85	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCACAGGAAGGCATCCTC	NA	False	NA	NA	False	NA	NA	NA	147418187	147244295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147247106_147247163_147249842_147260301_147260360_147261201_147261330_147262780_147262995_147415938_147416737_147416904_147417901_147417944
97426	chr12	+	601	1	Intergenic	novelGene_4451	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTTTAAGTTCTTACCA	2128	False	NA	NA	False	NA	NA	NA	99611333	99611934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_99611300_99611900
97427	chr2	+	1012	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11386	-51	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATGCAGCTACAGCAAC	NA	False	NA	NA	False	NA	NA	NA	11413648	11425980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
97428	chr16	+	3364	8	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_4	717.304876404926	2	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6877	False	NA	NA	False	NA	NA	NA	22927331	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22927384_22927468_22928010_22928734_22928904_22928983_22929094_22929335_22929474_22929875_22930014_22930252_22930343_22930566
97429	chr7	+	3194	16	NNC	ENSMUSG00000061079.15	novel	3003	16	NA	NA	4	248	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	69.7078347262503	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAATACATATAGAT	NA	False	NA	NA	False	NA	NA	NA	109660932	109694849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687982_109688084_109690971_109691134_109692276_109692424_109693497
97430	chr3	+	7354	11	FSM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	1	16	1	-16	multi-exon	FALSE	canonical	2	14	junction_5	19.1627242322171	12	101	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACTTTCTCAAGACACT	253	False	NA	NA	False	NA	NA	NA	101284399	101370359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
97431	chr4	-	3740	4	NNC	ENSMUSG00000028639.15	novel	1054	5	NA	NA	-206	-2	intron_retention	TRUE	non_canonical	0	0	junction_2	5050.5652708935	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTCTAGTTTTGTCATAA	NA	False	NA	NA	False	NA	NA	NA	119140195	119135179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_119135565_119136130_119137702_119137918_119138850_119139342
97433	chr19	+	3876	20	NNC	ENSMUSG00000046139.9	novel	3158	20	NA	NA	52	-168	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	67.9137060404161	2	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTTATAGGGTATTGT	NA	False	NA	NA	False	NA	NA	NA	11889858	11922287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694_11921724_11921799
97434	chr2	-	3006	4	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	0.471404520791032	12	34	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTACATAGTTGCCATGG	7722	False	NA	NA	False	NA	NA	NA	162924722	162917274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162919807_162921511_162921627_162922636_162922742_162924468
97435	chr6	+	4140	15	NNC	ENSMUSG00000030096.9	novel	738	6	NA	NA	-24	-770	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	128.264713521272	9	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCACACACACAACAAAACC	NA	False	NA	NA	False	NA	NA	NA	91678613	91735277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91678807_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894_91732938_91734106
97436	chrX	-	800	1	Antisense	novelGene_ENSMUSG00000081684.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCGGGTCCTCCGGGCCC	NA	False	NA	NA	False	NA	NA	NA	51988311	51987511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_51987500_51988300
97437	chr15	-	1279	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	10038.849699241	57	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964703_79965058_79965233_79965815_79965985_79966590_79966784_79967524
97438	chr1	+	1981	6	NIC	ENSMUSG00000026201.13	novel	2876	8	NA	NA	-3	1	intron_retention	FALSE	canonical	3	167	junction_4	34.5913283931103	35	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTAGGTCAATGTGTC	NA	False	NA	NA	False	NA	NA	NA	75187486	75190887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75190342_75190457
97439	chr16	+	4166	24	NNC	ENSMUSG00000025616.15	novel	3205	18	NA	NA	21	12380	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	110.814274363218	250	43	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCCGGTCGCCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	87251893	87292785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_87251991_87255528_87255631_87258852_87258906_87268968_87269057_87273591_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994_87280954_87281691_87281814_87282469_87282633_87282721_87282793_87283122_87283240_87283320_87283409_87283482_87283550_87284421_87284600_87285693_87285838_87287211_87287271_87287372_87287553_87288188_87288338_87290592_87290674_87291223_87291316_87292616
97440	chr2	-	4028	12	FSM	ENSMUSG00000027071.15	ENSMUST00000028465.14	1812	12	-331	-1885	-331	1885	multi-exon	FALSE	canonical	2	7	junction_11	6.62452243717697	30	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGCTTATATCTGATATA	NA	False	NA	NA	False	NA	NA	NA	84866162	84827041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84865524
97441	chr13	-	3810	4	NNC	ENSMUSG00000052727.7	novel	11808	7	NA	NA	14553	-1083	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	39.5979797464467	1	163	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGCTTTCTCAGTCTTG	NA	False	NA	NA	False	NA	NA	NA	99565899	99559036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_99561349_99561390_99562470_99563726_99563966_99565719
97442	chr3	-	3381	29	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	335.20190953075	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3539	False	NA	NA	False	NA	NA	NA	89959790	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909585_89909638_89909684_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942010_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
97444	chr2	-	3553	15	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	-50	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	487.829977281731	2	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTGGTTATGGTAC	NA	False	NA	NA	False	NA	NA	NA	103627368	103595357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597161_103602073_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
97445	chr8	+	3721	6	NNC	ENSMUSG00000096401.3	novel	930	5	NA	NA	-14206	-793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.613272615475	3	94	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTACGTGTGGCACCATT	NA	False	NA	NA	False	NA	NA	NA	20697896	20726473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20697970_20712012_20712098_20717197_20717493_20721120_20721241_20723149_20724256_20724431
97446	chr4	+	2472	3	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	2996	4	NA	NA	2	-35720	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTCAAGGAGAGTCTCACAA	928	False	NA	NA	False	NA	NA	NA	145237362	145314065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237585_145241499_145241542_145311857
97447	chr19	+	2521	2	Intergenic	novelGene_1300	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTATTAAGAGCGTGGA	NA	False	NA	NA	False	NA	NA	NA	60914072	60917424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_60915276_60916106
97448	chr4	-	4724	37	NNC	ENSMUSG00000028431.12	novel	6160	37	NA	NA	46	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	62.9734413938738	6	109	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCAGTGGTAAAGAGCGG	8	True	NA	NA	False	NA	NA	NA	56802285	56751004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56759800_56759915_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769158_56770987_56771079_56771432_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56775016_56775091_56775424_56775541_56776689_56776796_56776884_56776939_56778958_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
97449	chrX	-	664	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	408	-73	-408	mono-exon	FALSE	NA	NA	NA	NA	NA	17	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGGGCTGCCCAGAACAT	NA	False	NA	NA	False	NA	NA	NA	79238531	79237867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237900_79238500
97450	chr9	+	4232	18	NNC	ENSMUSG00000032512.8	novel	3845	19	NA	NA	-3	0	intron_retention	FALSE	canonical	1	1	junction_12	69.6573422455933	8	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGCTGGACATGT	NA	False	NA	NA	False	NA	NA	NA	119723957	119755652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745860_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143
97451	chr11	+	1890	2	Intergenic	novelGene_2351	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACTAGCCTGAGCTTTAG	NA	False	NA	NA	False	NA	NA	NA	57446707	57451297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57448135_57450834
97452	chr3	+	3127	7	NIC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	1	-292	intron_retention	FALSE	canonical	3	3249	junction_3	142.894677608681	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTTTGAAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	89986972	90007911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89997167_89997316_89997387_90006834
97453	chr11	-	1141	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	25	-164	25	164	mono-exon	FALSE	NA	NA	NA	NA	NA	4	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTCGCTGCACCCAAAAAA	4486	False	NA	NA	False	NA	NA	NA	20285988	20284847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286000
97454	chr3	+	3129	6	NNC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	-1	21	intron_retention	TRUE	non_canonical	0	0	junction_1	402.013233613024	47	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTACACAGTATTACTT	NA	False	NA	NA	False	NA	NA	NA	87826841	87831000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_87827840_87828039_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
97455	chr13	+	5094	19	NNC	ENSMUSG00000021413.10	novel	3648	16	NA	NA	3	-8	intron_retention	FALSE	non_canonical	0	0	junction_2	72.7389209246601	30	180	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCATACCGTCTACTG	NA	False	NA	NA	False	NA	NA	NA	35059489	35090039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_35059678_35067213_35067478_35067518_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083819_35083966_35084346_35084434_35085375_35087257_35087512_35087586_35088026_35088073_35089865
97457	chr11	-	2066	1	ISM	ENSMUSG00000069793.13	ENSMUST00000038211.13	5769	5	11360	15	10667	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	16	54	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAGAAAACATATTTTT	NA	False	NA	NA	False	NA	NA	NA	82871296	82869230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_82869200_82871300
97458	chr4	+	1160	10	Antisense	novelGene_ENSMUSG00000028455.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	24	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCAGCATTTCCCACAGC	NA	False	NA	NA	False	NA	NA	NA	43028052	43031363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_43028288_43028935_43029069_43029280_43029358_43029491_43029634_43029765_43029904_43030047_43030150_43030235_43030287_43030425_43030534_43030969_43031108_43031327
97459	chr11	-	4857	18	NIC	ENSMUSG00000040481.18	novel	867	7	NA	NA	-6431	-574	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	17.8086717339429	6	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGATACATATATTTTTAA	8670	False	NA	NA	False	NA	NA	NA	106964462	106926903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106927417_106931051_106931239_106933500_106933586_106934458_106934652_106937825_106938170_106943614_106943841_106944048_106944132_106945281_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508
97460	chr15	-	2624	5	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-117	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1737.34270870776	9	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	641	False	NA	NA	False	NA	NA	NA	36793880	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775810_36791020_36791233_36793722
97461	chr4	+	2699	4	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	598	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	188.646642046858	10	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	NA	False	NA	NA	NA	98615627	98626717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615708_98621359_98622316_98624682_98624729_98625100
97462	chr11	-	1345	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	28	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1252.4809601569	6	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGATTGTGTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	120472422	120468936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469408_120469894_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
97463	chr11	-	2714	14	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	132	808	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	695.143423113695	1	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTGGAGCACTCCTT	5333	False	NA	NA	False	NA	NA	NA	88846159	88814037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88814504_88814562_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
97464	chr9	+	4716	24	NNC	ENSMUSG00000033392.17	novel	5609	33	NA	NA	35890	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	46.9611108868582	2	33	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACTTGAAGACCTTAACT	NA	False	NA	NA	False	NA	NA	NA	113677557	113748747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_113677620_113679190_113679251_113680890_113680969_113681690_113681859_113682416_113682473_113683240_113683415_113691253_113691356_113697615_113697787_113699690_113699799_113705311_113705419_113709009_113709255_113710755_113710820_113719025_113719190_113721464_113721544_113725709_113725854_113728523_113728668_113730558_113730666_113732909_113733064_113735064_113735294_113737754_113737949_113738483_113738613_113740477_113740650_113744202_113744323_113747062
97465	chr16	+	7553	7	FSM	ENSMUSG00000022961.19	ENSMUST00000119368.8	7529	7	-31	7	-31	-7	multi-exon	FALSE	canonical	3	68	junction_6	146.545120090101	238	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAACTTGTTGTGCAAA	NA	False	NA	NA	False	NA	NA	NA	91444735	91462589	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91461807
97466	chr2	-	3110	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	3085	1737	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	437.731652956466	75	66	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	5433	False	NA	NA	False	NA	NA	NA	177266907	177259259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177260233_177260283_177262087_177263226_177263288_177263479_177263607_177266761
97467	chr4	+	2312	6	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-44	342	multi-exon	FALSE	non_canonical	0	0	junction_2	39.1458810093731	3	37	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATATGGTGATTTGTGT	NA	False	NA	NA	False	NA	NA	NA	147209668	147669997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147219028_147219122_147545579_147545596_147665698_147665826_147667290_147667445_147668191
97468	chr15	-	1982	6	FSM	ENSMUSG00000022476.9	ENSMUST00000230765.2	1290	6	-209	-483	-10	314	multi-exon	FALSE	canonical	1	4	junction_5	105.973581613532	10	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGGAACCTCCCCTTTTC	488	False	NA	NA	False	NA	NA	NA	81810381	81800287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809428
97470	chr11	-	3880	9	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	10700	-3	intron_retention	TRUE	non_canonical	0	0	junction_5	863.554129383329	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGACGGCTGAAAATTCT	8853	False	NA	NA	False	NA	NA	NA	88835591	88814848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88825498_88826648_88827337_88827452_88827878_88832109_88832183_88834622_88834698_88835200
97471	chr4	+	3308	14	Fusion	ENSMUSG00000086147.3_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	-2	-9	multi-exon	TRUE	non_canonical	0	0	junction_1	101.418752277917	4	69	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147056430	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056489_147217303_147217441_147316807_147316901_147395015_147395120_147533923_147533956_147536170_147536264_147538037_147538146_147591995_147592098_147595209_147595337_147596801_147597042_147598384_147598931_147599008_147599263_147668148_147668493_147668576
97472	chr13	+	3154	4	Fusion	ENSMUSG00000097906.2_ENSMUSG00000090659.10	novel	3258	4	NA	NA	-1	1797	multi-exon	FALSE	canonical	2	7	junction_3	12.7540843131393	68	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCTCATACTTGACTGTG	NA	False	NA	NA	False	NA	NA	NA	67927822	67961116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_67927939_67931908_67932036_67932512_67932609_67958301
97473	chr16	-	5346	5	FSM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	-49	12	-49	-12	multi-exon	FALSE	canonical	3	12	junction_3	7.25861557047899	59	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATACAACAGACTGTGTGG	9985	False	NA	NA	False	NA	NA	NA	35759570	35746892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_35749739_35751742_35751961_35752645_35754170_35756746_35756998_35759063
97474	chr18	+	1755	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	-7	-1	7	mono-exon	FALSE	NA	NA	NA	NA	NA	58075	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
97475	chr6	+	1810	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	546	85	8	-85	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	23	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGTTTTTCATAAACAT	5156	False	NA	NA	False	NA	NA	NA	85429041	85445372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
97476	chr11	+	2216	1	Intergenic	novelGene_2355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCAACGCCCCGAGGGGT	NA	False	NA	NA	False	NA	NA	NA	57446711	57448927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57446700_57448900
97477	chr13	+	3666	5	Antisense	novelGene_ENSMUSG00000113204.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGGCAACCGGAAGACC	NA	False	NA	NA	False	NA	NA	NA	74752542	74765428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_74755857_74757242_74757301_74758317_74758445_74759381_74759440_74765319
97478	chr12	-	2178	4	Intergenic	novelGene_4315	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	42	junction_3	39.6063967897443	18	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTCTCCATTATTTTTA	NA	False	NA	NA	False	NA	NA	NA	21828709	21807779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_21809538_21810872_21810934_21811135_21811263_21828477
97479	chr2	+	3949	6	NNC	ENSMUSG00000027439.10	novel	4232	6	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	30.0506239535887	5	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTGCTTTGTAAAAG	543	False	NA	NA	False	NA	NA	NA	148523114	148534869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_148523136_148525513_148526889_148528433_148528529_148529923_148530092_148531995_148532043_148532626
97480	chr16	+	4111	5	ISM	ENSMUSG00000022812.15	ENSMUST00000023507.13	8303	11	104959	1889	-14078	-1889	3prime_fragment	FALSE	canonical	3	38	junction_3	5.61248608016091	7	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGTATTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	38014321	38064557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_38014357_38028356_38028453_38040333_38040521_38049039_38049139_38060863
97481	chrM	+	1445	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	39	98	39	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	3	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAATAGAGCCACCTTAC	17	False	NA	-32	True	NA	NA	NA	1132	2577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2600
97482	chr18	+	5547	22	Fusion	ENSMUSG00000024483.20_ENSMUSG00000090264.2	novel	8200	34	NA	NA	10535	-8	multi-exon	FALSE	canonical	3	35	junction_16	36.4320882211574	160	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTCTTGGCTCCAT	4455	False	NA	NA	False	NA	NA	NA	36757899	36798962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr18_+_36758321_36765119_36765266_36765402_36765515_36765760_36765907_36767279_36767423_36767644_36767859_36771257_36771434_36771598_36771762_36773317_36773414_36774629_36774747_36775978_36776148_36777313_36777768_36778157_36778293_36779743_36779894_36780183_36781794_36787145_36787320_36788526_36788731_36789738_36789888_36791026_36791192_36794049_36794160_36798334_36798509_36798643
97483	chr6	-	6597	2	Intergenic	novelGene_4216	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	78	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCCTACCCACTCCGGTGC	NA	False	NA	NA	False	NA	NA	NA	101627248	101562802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_101565689_101623537
97484	chr4	-	4179	10	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	45	-11	intron_retention	FALSE	canonical	3	1320	junction_9	107.781099605166	6	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGAGGCCAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	137523650	137469054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_137470616_137470945_137471138_137473703_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
97485	chr11	+	5081	30	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-17	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	53.9806192375552	23	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771161	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84771615_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
97486	chr2	-	1475	6	NNC	ENSMUSG00000086453.8	novel	676	6	NA	NA	-10	4147	intron_retention	TRUE	canonical	0	0	junction_1	3.44093010681705	50	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAGCATTACATATAG	2124	False	NA	NA	False	NA	NA	NA	164611554	164592014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164592779_164595992_164596225_164601148_164601261_164604463_164604529_164609632_164609871_164611490
97487	chr8	+	2205	8	NNC	ENSMUSG00000019428.17	novel	1698	9	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_1	581.652782322644	1224	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTTCTAGGCCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	70980398	70987978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984648_70985226_70985400_70986766_70986845_70987132
97488	chr5	-	5492	15	NIC	ENSMUSG00000029673.20	novel	7410	19	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_10	16.1708038748599	82	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCAGATGTTTCTTTGT	NA	False	NA	NA	False	NA	NA	NA	131566788	131466170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_131469532_131472293_131472517_131474236_131474321_131475644_131475723_131480721_131480864_131486676_131486749_131488964_131488995_131490119_131490192_131494869_131494966_131499251_131499297_131501096_131501318_131503760_131504015_131505390_131505863_131562659_131562712_131566498
97489	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	473	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
97490	chr1	-	3886	2	Intergenic	novelGene_492	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	20	junction_1	0	36	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGACTAAGCCCAGATCC	6867	False	NA	NA	False	NA	NA	NA	181858795	181852758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_181856457_181858607
97491	chrX	-	4044	17	NNC	ENSMUSG00000031434.16	novel	3862	17	NA	NA	-11	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	13.4437485471873	62	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCGCACAAGTGTTCCATGG	NA	False	NA	NA	False	NA	NA	NA	138772414	138722458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_138723578_138723878_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758644_138759546_138759766_138765243_138765377_138771818_138771892_138772020
97493	chr3	-	4689	14	NIC	ENSMUSG00000027981.15	novel	3888	15	NA	NA	33	-5	intron_retention	FALSE	canonical	3	32	junction_1	24.3203472413703	27	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACAGTGTCTAATTTTT	NA	False	NA	NA	False	NA	NA	NA	113423765	113399117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_113400949_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
97494	chr13	-	2601	13	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	2912.98435171446	2	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4758	False	NA	NA	False	NA	NA	NA	58550323	58539052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58548146_58548232_58550206
97495	chr1	-	2894	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-21	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	865.555520677328	1	59	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGACTTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20890505	20873237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875561_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882245_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
97496	chr2	+	4318	6	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	-41	2519	intron_retention	FALSE	canonical	3	38	junction_3	82.9216497665115	417	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGCCGAATAAACCCTTT	NA	False	NA	NA	False	NA	NA	NA	177189966	177204075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177194885_177194988_177198701_177198829_177199035_177199097_177200246
97497	chr19	+	3647	26	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	-14	-126	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_22	439.811959819194	2	137	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAGGACTCAGGAACCAG	1849	False	NA	NA	False	NA	NA	NA	8875420	8893910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892407_8892521_8892619_8892767_8892869_8892988_8893408_8893526
97499	chr6	-	4045	15	Intergenic	novelGene_4209	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	40	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACTGTGAAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	91735280	91682865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_91682957_91700260_91700501_91701820_91701955_91702990_91703228_91712071_91712203_91716855_91716995_91717929_91718032_91718156_91718280_91721893_91722008_91725310_91725450_91726705_91726810_91727252_91727355_91729265_91729437_91731892_91732935_91734104
97500	chr9	+	4224	15	NNC	ENSMUSG00000040325.17	novel	4967	23	NA	NA	-4224	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	126.850084263082	1	113	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTATGGCCTTTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	106723860	106758180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_106724038_106724979_106725190_106729136_106729307_106731368_106731494_106735022_106736287_106736779_106736979_106737577_106737661_106738166_106738252_106740215_106740450_106740848_106740943_106741714_106741820_106742229_106742304_106742796_106742903_106751254_106751508_106757135
97501	chr13	+	5175	2	Intergenic	novelGene_1549	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	111	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	113855139	113860376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113857538_113857599
97502	chr4	+	2456	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	1633	768	multi-exon	FALSE	canonical	1	1	junction_1	39.9110121255887	1	50	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145138468	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145138572_145138756_145138851_145160315_145160385_145176036
97503	chr16	-	6146	31	NIC	ENSMUSG00000064061.14	novel	3331	31	NA	NA	51	-22	combination_of_known_junctions	FALSE	canonical	3	44	junction_18	22.9540846038347	84	37	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAAAATATTTCTGAAT	4472	False	NA	NA	False	NA	NA	NA	48814253	48744618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_48747709_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
97505	chr3	-	5948	8	NNC	ENSMUSG00000004896.17	novel	2492	8	NA	NA	-42	2892	intron_retention	FALSE	non_canonical	0	0	junction_1	39.3352933905729	172	85	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCCCCGCAACTTTCTT	9401	False	NA	NA	False	NA	NA	NA	87837493	87827015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_87827832_87828031_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
97506	chr7	-	1560	9	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	331	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	6725.38012750023	5	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398877	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398616
97507	chr18	+	2119	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	346	6	83	-3	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	182	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAATGTGTCTTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	77861774	77870563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
97508	chr15	-	3056	16	NNC	ENSMUSG00000022391.17	novel	2984	17	NA	NA	-205	-63	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	278.746352243198	2	83	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTTGTGTGTCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	81613805	81588516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594745_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613417
97509	chr4	+	2968	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-20	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	85.0040440214464	7	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033847	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034023_146036302_146036397_146054375_146054480_146058453_146058581_146060726
97511	chr17	-	2617	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-25	intron_retention	FALSE	canonical	3	11	junction_10	3293.36262807484	7	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGAAGATGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45883965
97512	chr10	-	2613	3	Intergenic	novelGene_3525	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_2	0.5	14	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAACACAAAATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	111213679	111208966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_111209451_111210511_111210577_111211615
97513	chr11	+	2189	1	ISM	ENSMUSG00000037331.16	ENSMUST00000071487.13	6614	19	49736	1043	17187	-1043	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGACCCTCTGAGGGAAGA	NA	False	NA	NA	False	NA	NA	NA	57949625	57951814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57949600_57951800
97514	chr19	-	3260	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAATTTGCAACAAGACCG	NA	False	NA	NA	False	NA	NA	NA	22703324	22699850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700560_22700773
97515	chr1	-	1125	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGGTGGCTGCAGCGAGC	9062	False	NA	NA	False	NA	NA	NA	86458417	86454518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457271_86457451_86457525_86457684
97516	chr2	+	2493	3	Antisense	novelGene_ENSMUSG00000095362.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATCTGTTTTCCTAGACA	8243	False	NA	NA	False	NA	NA	NA	177473012	177476867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177474887_177476040_177476103_177476310
97517	chr2	-	4185	29	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	88	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGGCGGGCCCAGCGGCG	NA	False	NA	NA	False	NA	NA	NA	52000753	51962842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51962879_51963148_51963264_51964256_51964340_51966094_51966199_51966997_51967120_51967203_51967298_51968340_51968533_51972613_51972814_51975036_51975189_51978657_51978773_51979530_51979716_51980199_51980295_51982051_51982115_51982289_51982395_51983518_51983582_51984602_51984659_51985817_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993710_51994557_51994599_51995444_51995650_51996912_51997013_51997649_51997768_51998449_51998603_51999202_51999288_51999362_51999413_51999920
97518	chr13	-	5590	20	Genic_Genomic	ENSMUSG00000113380.2	novel	1209	2	NA	NA	-29487	36684	multi-exon	TRUE	non_canonical	0	0	junction_1	140.453736431475	2	235	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCGGAGGAGGCGCAGATA	NA	False	NA	NA	False	NA	NA	NA	13686477	13612243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_13612510_13638304_13638605_13639892_13640118_13642811_13643188_13647360_13647513_13650741_13650993_13652719_13652919_13656597_13656847_13658232_13658374_13661218_13661347_13663586_13663733_13664633_13664750_13674141_13674372_13675030_13675202_13676976_13677109_13680918_13681096_13682198_13682346_13683298_13683427_13684017_13684132_13684535
97519	chr4	+	2117	2	Intergenic	novelGene_2018	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	23	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGAATCATCTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	145184999	145363989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_145185385_145362257
97520	chr6	+	4701	17	Antisense	novelGene_ENSMUSG00000065728.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	83	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGGGCCAGGACCAGAGC	NA	False	NA	NA	False	NA	NA	NA	97130995	97155714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_97132458_97133803_97133931_97135006_97135159_97135420_97135521_97137200_97137297_97137491_97137560_97138326_97138520_97140477_97140637_97141009_97141101_97144207_97144367_97145048_97145214_97145706_97145848_97147282_97147392_97149172_97149301_97150260_97150366_97152726_97153929_97155470
97521	chr17	+	4442	5	FSM	ENSMUSG00000090115.8	ENSMUST00000152724.2	1443	5	-2	-2997	-2	-2685	multi-exon	FALSE	canonical	3	25	junction_4	46.8794997840207	3	105	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTGACTACTACCACTG	NA	False	NA	NA	False	NA	NA	NA	47983642	47994978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
97522	chr15	+	1738	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	42	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCCGCTCCGCAGACACG	393	False	NA	NA	False	NA	NA	NA	36771812	36793838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36772764_36775500_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793724
97523	chr8	-	559	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	-44	-59	-44	59	mono-exon	FALSE	NA	NA	NA	NA	NA	139	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCTAAAGAACATTGTAC	NA	False	NA	NA	False	NA	NA	NA	107989924	107989365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107989400_107989900
97524	chr8	+	3724	20	Antisense	novelGene_ENSMUSG00000031561.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGCGCGTGGGTGGGTGTC	NA	False	NA	NA	False	NA	NA	NA	48729791	49008970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_48729937_48730698_48730857_48731989_48732228_48740827_48741073_48745150_48745298_48746541_48746808_48751815_48752080_48752622_48752751_48753791_48754005_48763655_48763805_48788623_48788812_48793988_48794193_48795293_48795489_48795651_48795752_48796266_48796475_48802231_48802448_48820344_48820469_48848470_48848712_48870044_48870285_49008915
97525	chr4	+	2067	22	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_20	248.489258449185	782	7	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTGTAGTAGTG	0	True	NA	NA	False	NA	NA	NA	34614968	34660161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34640873_34640977_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34657456_34657571_34659490_34659555_34659983
97526	chr4	-	2412	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	65	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	461.672901271663	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGGCCAGAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	137523630	137469053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471103_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
97527	chr1	+	6910	2	Antisense	novelGene_ENSMUSG00000102434.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATATCATACATATACAATT	1391	False	NA	NA	False	NA	NA	NA	36070048	36076994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_36072692_36072727
97528	chr7	-	2073	11	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	256	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	9010.55944378594	1128	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	126398952	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216_126398497_126398610
97529	chr17	-	1812	18	ISM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	28	4573	28	-641	5prime_fragment	FALSE	canonical	3	105	junction_14	29.5386674034615	38	20	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTGACCAGGAGGACAC	NA	False	NA	NA	False	NA	NA	NA	45997157	45975669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45989888_45989928_45990162_45990243_45990457_45990641_45997042
97530	chr7	-	665	2	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTTCATTATGCTCTCA	NA	False	NA	NA	False	NA	NA	NA	46505030	46503495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46503529_46504398
97531	chr10	+	6635	13	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	97	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGCCTGCCGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	62648207	62728637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649190_62649300_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62713928_62715934_62728421
97532	chr7	-	1353	6	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCCTAAAAGACAAACGGT	NA	False	NA	NA	False	NA	NA	NA	46505049	46498400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46498513_46499599_46499774_46500306_46500482_46501299_46501417_46503404_46503529_46504398
97533	chr4	+	2576	6	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-5	2572	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	133.436726578555	573	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147576868	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147577009_147591995_147592098_147595209_147595337_147596801_147597221_147598559_147598853_147599020
97534	chr2	-	4280	4	NNC	ENSMUSG00000027131.4	novel	700	4	NA	NA	-11105	-10	intron_retention	FALSE	non_canonical	0	0	junction_2	394.806563043501	23	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTAATGTTTCACAAGTT	NA	False	NA	NA	False	NA	NA	NA	112209477	112193365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_112194298_112194496_112194898_112195523_112198404_112209410
97535	chr4	+	3112	7	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	14	-210	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	196.482399551037	2	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAGCCACCCAGACAGCA	940	False	NA	NA	False	NA	NA	NA	145237374	145265548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237589_145241501_145241589_145243726_145243868_145245504_145245556_145257381_145257486_145261385_145261513_145263160
97536	chr9	+	1878	11	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	18	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	77.4353924249112	1	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCTTTCTTACTTGCTA	NA	False	NA	NA	False	NA	NA	NA	108174086	108179483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108178668_108178717_108178876_108178993
97537	chr5	-	1393	6	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-191	0	combination_of_known_splicesites	FALSE	canonical	3	466	junction_5	127.023462399669	17	20	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	100521534	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238
97538	chr14	+	1976	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	578.24940873141	2	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCAGACTCTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271113	30295581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290245_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
97539	chr14	-	3493	1	Intergenic	novelGene_556	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	82	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGGGAACCTTATCGTCTC	NA	False	NA	NA	False	NA	NA	NA	47036684	47033191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_47033200_47036700
97540	chr6	-	8502	18	NIC	ENSMUSG00000030172.16	novel	6719	20	NA	NA	3	-4	intron_retention	FALSE	canonical	3	7	junction_13	29.5637250837991	100	64	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTGTGCTGCAGCCTTCT	NA	False	NA	NA	False	NA	NA	NA	119825092	119547760	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_119552724_119571745_119571935_119597271_119597371_119607563_119607709_119671531_119671693_119690640_119690773_119699133_119699270_119720248_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119756437_119756594_119760349_119760425_119773867_119774285_119801346_119802171_119824837
97541	chr12	+	8843	43	Genic_Genomic	ENSMUSG00000020955.10	novel	757	6	NA	NA	52684	85302	multi-exon	FALSE	non_canonical	0	0	junction_1	0	176	23	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGTACTTCCGTAGTT	NA	False	NA	NA	False	NA	NA	NA	51790503	51876871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_51791440_51791546_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795793_51797101_51797240_51798636_51798841_51800523_51800651_51800824_51800914_51800999_51801204_51801699_51801886_51803828_51803885_51806001_51806221_51807792_51807957_51809208_51809330_51810803_51810938_51814338_51814561_51815311_51816148_51819055_51819236_51819323_51819491_51820610_51820931_51821428_51821570_51823273_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834759_51836950_51837030_51837132_51837399_51838002_51838225_51841195_51841367_51841520_51841660_51844618_51844792_51845431_51845552_51847497_51847593_51847673_51847756_51848946_51849217_51849316_51849598_51850449_51850678_51853142_51853380_51874134_51874296_51876692
97543	chr2	+	6077	4	FSM	ENSMUSG00000079008.3	ENSMUST00000109922.2	3018	4	10	-3069	10	3069	multi-exon	FALSE	canonical	3	21	junction_3	13.8804418757713	93	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGAAGGTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	150099446	150115289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_150099549_150108044_150108172_150108370_150108432_150109502
97544	chr9	+	4530	1	Antisense	novelGene_ENSMUSG00000097504.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	70	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAACCTCGTCTGTATTT	NA	False	NA	NA	False	NA	NA	NA	119266667	119271197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_119266700_119271200
97545	chrM	-	1147	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	2	-1080	2	1080	mono-exon	FALSE	NA	NA	NA	NA	NA	6	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGCTAAATGAAGGGAGA	9252	False	NA	NA	False	NA	NA	NA	6936	5789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5800_6900
97546	chr17	+	1147	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-92	794	-92	-794	mono-exon	FALSE	NA	NA	NA	NA	NA	7	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACGATCAGATACCGTTG	NA	False	NA	-44	True	NA	NA	NA	40157151	40158298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40158300
97547	chr13	-	7707	30	NNC	ENSMUSG00000014850.16	novel	4254	25	NA	NA	-32886	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_24	44.992799001063	111	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGCTCATTGCATGGCG	6438	False	NA	NA	False	NA	NA	NA	92524397	92348393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372240_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481608_92483238_92483359_92483836_92483954_92485656_92485846_92487738_92487869_92489732_92489851_92491270_92491532_92491579_92491848_92492151_92492206_92494432_92494536_92502167_92502298_92504690_92504809_92521232
97548	chr1	+	3377	19	Antisense	novelGene_ENSMUSG00000055322.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	13	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGCCTGCGGGAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	73991638	74137872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_73993110_74020072_74020189_74021390_74021458_74024177_74024308_74024861_74024938_74025033_74025097_74025423_74025535_74029469_74029556_74030835_74030898_74031257_74031384_74032323_74032377_74034362_74034545_74036210_74036263_74041444_74041499_74042676_74042718_74055303_74055348_74107769_74107808_74118359_74118475_74137382
97549	chrM	-	1518	1	Antisense	novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000065947.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	134	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAAGAAGGTAGATGGCA	63	True	NA	NA	False	NA	NA	NA	11415	9897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_9900_11400
97550	chr9	-	3549	17	NNC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	0	-5	intron_retention	FALSE	non_canonical	0	0	junction_4	425.609985050868	1	96	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTGTTGCCTGGTTTA	NA	False	NA	NA	False	NA	NA	NA	64080195	64044430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054548_64054689_64057416_64057595_64060166_64060247_64060832_64060933_64062445_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
97551	chr15	-	3684	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	67	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9926	False	NA	NA	False	NA	NA	NA	22704964	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22703358_22704819
97552	chr6	+	796	2	Genic_Genomic	ENSMUSG00000063171.5	novel	943	1	NA	NA	41	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256248	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_148256974_148257025
97553	chr2	-	1274	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-70	-204	-70	204	mono-exon	FALSE	NA	NA	NA	NA	NA	52	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTGAGCTTAGCTGGG	NA	False	NA	NA	False	NA	NA	NA	28824691	28823417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
97554	chr5	+	1151	5	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	1086	220	930	-220	3prime_fragment	FALSE	canonical	3	6763	junction_4	4510.81835008904	7	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAAACTCCGGTCTGGA	NA	False	NA	NA	False	NA	NA	NA	115698611	115701566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
97555	chrM	+	2188	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-364	0	364	mono-exon	FALSE	NA	NA	NA	NA	NA	2	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAAACCCTAAAACCATTA	-4	True	NA	4	True	NA	NA	NA	11741	13929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13900
97556	chr2	+	4086	19	NIC	ENSMUSG00000036617.18	novel	7197	21	NA	NA	-164	20	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	65.8485214547584	1	87	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCAGGACGGTCCGCTCA	4632	False	NA	NA	False	NA	NA	NA	20524437	20813712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20764357_20764463_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712_20812836_20813520
97557	chr17	-	3422	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	0	958	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	240.284856992695	3	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGTGAACTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	28841461	28807605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_28808331_28808388_28809216_28810174_28810301_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
97558	chr1	-	1202	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	114	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGACTCACGCGGCGCCA	9059	False	NA	NA	False	NA	NA	NA	86458420	86454447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
97559	chr3	+	3259	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	2221	1	585	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	27	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAAGCCCTGAGTGGGCTG	NA	False	NA	NA	False	NA	NA	NA	41510166	41569078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
97561	chr16	+	3161	10	ISM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	-1	2	0	-2	intron_retention	FALSE	canonical	3	1315	junction_4	273.717210111296	5	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
97563	chr13	+	8739	7	Fusion	ENSMUSG00000063905.3_ENSMUSG00000113661.2_ENSMUSG00000113008.2	novel	327	2	NA	NA	-8720	5041	intron_retention	TRUE	non_canonical	0	0	junction_3	9.15908777602272	789	108	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGTAGTCTTCTCTT	NA	False	NA	NA	False	NA	NA	NA	65651771	65671267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_65651859_65658192_65658320_65658519_65658581_65659881_65660340_65660507_65660937_65661018_65666557_65669228
97564	chr5	+	373	1	Intergenic	novelGene_958	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	465	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197802	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
97565	chr9	+	2458	5	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	1	-311	intron_retention	FALSE	non_canonical	0	0	junction_4	7675.46806390333	4	16	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTGGAGATCTTTTAAT	2471	False	NA	NA	False	NA	NA	NA	40712583	40716184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714141_40714309
97568	chr16	-	564	1	Intergenic	novelGene_3784	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
97569	chr9	-	2822	15	NNC	ENSMUSG00000032534.19	novel	4180	13	NA	NA	-7892	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	45.5795447318113	7246	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACATGAATGTTTATTAC	NA	False	NA	NA	False	NA	NA	NA	102511625	102463884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496236_102496890_102496960_102503461_102503885_102506959_102507085_102511209
97570	chr17	-	2345	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	9	-18	intron_retention	FALSE	canonical	0	0	junction_6	3303.74860423731	24	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884170	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881359_45881587_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
97571	chr2	-	2594	7	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	104	multi-exon	FALSE	canonical	0	0	junction_1	62.8640508469577	142	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAGAAGTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	156681710	156631627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
97572	chr1	+	9979	3	Intergenic	novelGene_332	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	43	221	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	7547318	7691133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_7552172_7685965_7688663_7688704
97573	chr11	+	4704	30	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	6	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	58.1077559029438	1	144	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771184	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84775111_84775222_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
97574	chrX	+	5186	1	Intergenic	novelGene_4076	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAGAATCGTGTTTTAG	NA	False	NA	NA	False	NA	NA	NA	148930361	148935547	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_148930400_148935500
97575	chr6	-	3674	13	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_3	99.5878660056312	216	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	112673619	112603375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112605486_112621548_112621709_112626555_112626814_112641056_112641135_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663699_112663748_112664937_112665000_112670429_112670512_112673504
97576	chr11	+	4738	30	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	5	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	64.2720140923059	5	25	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771197	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84771983_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778638_84778770_84778879_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
97578	chrM	-	1288	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1214	-5	1214	mono-exon	FALSE	NA	NA	NA	NA	NA	6	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGATGGTGGTAGGAGT	9245	False	NA	NA	False	NA	NA	NA	6943	5655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5700_6900
97579	chr4	+	3067	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	4550	4	NA	NA	52	-2056	multi-exon	FALSE	canonical	0	0	junction_1	251.997991369616	34	56	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAATTCAAATGAGCCAAT	NA	False	NA	NA	False	NA	NA	NA	146206993	146552693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207142_146500285_146500373_146502756_146502850_146508052_146508139_146511618_146511707_146518661_146518740_146533486_146533533_146547961_146548020_146548860_146548988_146550437
97580	chr10	-	3781	3	ISM	ENSMUSG00000047146.18	ENSMUST00000050826.14	13986	11	54	33891	54	636	5prime_fragment	FALSE	canonical	3	223	junction_2	18	2	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTGCATCAGATACCA	NA	False	NA	-107	True	NA	NA	NA	62715739	62674239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62676158_62700586_62700641_62713930
97581	chr1	-	3177	12	ISM	ENSMUSG00000041859.11	ENSMUST00000185296.2	3431	16	0	4450	0	-2737	5prime_fragment	FALSE	canonical	3	2257	junction_6	173.948695770709	4	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTCTGTTTAGTTTAACC	NA	False	NA	NA	False	NA	NA	NA	20890484	20877646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
97582	chr16	-	5652	16	NIC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	6	-212	intron_retention	FALSE	canonical	3	24	junction_3	492.158709722337	6	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCACAATCACTGGGTGT	NA	False	NA	NA	False	NA	NA	NA	91443834	91418772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91422409_91424914_91425068_91425309_91425562_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440035_91443771
97583	chr4	+	4157	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14231	2914	multi-exon	FALSE	non_canonical	0	0	junction_2	27.8128667266709	1	63	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	145159078	145180372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036_145176318_145176484_145176816_145176900
97584	chr3	+	5758	2	NNC	ENSMUSG00000028180.19	novel	691	6	NA	NA	1170	-11	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCGTGAGTCAACTATCAA	NA	False	NA	NA	False	NA	NA	NA	157247457	157253962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_157252541_157253287
97585	chr4	-	397	2	Genic_Genomic	ENSMUSG00000068240.6	novel	504	1	NA	NA	0	-25	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6	True	NA	NA	False	NA	NA	NA	3973595	3973116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_3973329_3973410
97586	chr6	+	3001	1	ISM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	71245	768	5114	-768	mono-exon	FALSE	NA	NA	NA	NA	NA	1	122	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CACACACACAACAAAACCCA	6060	False	NA	NA	False	NA	NA	NA	91732278	91735279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_91732300_91735300
97587	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	364	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	8	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
97588	chr4	+	5347	10	Antisense	novelGene_ENSMUSG00000104566.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	223	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGGTCATGGGGTACCGC	959	False	NA	NA	False	NA	NA	NA	133416390	133450196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_133417384_133417441_133420222_133420317_133420457_133421061_133421381_133421972_133422146_133422884_133422968_133423221_133423467_133446846_133446964_133447859_133448313_133450151
97589	chr3	-	2421	9	ISM	ENSMUSG00000028106.14	ENSMUST00000200164.5	7498	10	-232	10884	-1	-668	5prime_fragment	FALSE	canonical	3	28	junction_1	30.638772413398	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGAATAGTCTCCAACCA	9924	False	NA	NA	False	NA	NA	NA	95726176	95678536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_95679509_95681423_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95694595_95694697_95697411_95697542_95725858
97590	chr13	-	5121	1	FSM	ENSMUSG00000114423.2	ENSMUST00000224301.2	153	1	-1769	-3199	-1769	3199	mono-exon	FALSE	NA	NA	NA	NA	NA	92	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCCGGAAGATCCCGCCT	NA	False	NA	NA	False	NA	NA	NA	66906319	66901198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_66901200_66906300
97591	chr1	-	932	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	-12	-29	-12	29	mono-exon	FALSE	NA	NA	NA	NA	NA	26	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAACAACAACAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837417	86836485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837400
97592	chr6	-	1792	11	NNC	ENSMUSG00000029752.13	novel	2016	12	NA	NA	2730	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2593.07898259964	2	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	5329	False	NA	NA	False	NA	NA	NA	7689492	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677296_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251
97593	chr1	-	755	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	84	-161	-84	mono-exon	FALSE	NA	NA	NA	NA	NA	3	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACAATTCTAGAATTTGC	NA	False	NA	NA	False	NA	NA	NA	24653893	24653138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
97594	chr17	+	1122	4	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	67	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2037.00717284506	2	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATAGCTGAATTTTGTT	3103	False	NA	NA	False	NA	NA	NA	35816981	35821664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820084_35820877_35821037_35821184
97595	chr19	-	5990	21	NNC	ENSMUSG00000025085.17	novel	3184	23	NA	NA	18	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	32.2897429534519	34	105	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTCTCTCCCGAGAGTG	7818	False	NA	NA	False	NA	NA	NA	57170722	57021712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_57025770_57027838_57027920_57028918_57028994_57030341_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57121293_57121388_57123013_57123141_57140704_57140815_57143583_57143768_57161756_57161892_57170657
97596	SIRV3	+	1450	9	NNC	SIRV3A	novel	1083	8	NA	NA	-1	975	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1096.01901785507	900	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCGGCAAAGCGCAATGCG	NA	False	NA	NA	False	NA	NA	NA	4002	9914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV3_+_4081_4568_4780_6060_6334_7270_7367_7872_7989_8124_8208_8755_8967_9189_9325_9667
97597	chrM	-	2265	2	Antisense	novelGene_ENSMUSG00000064342.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	50	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGATTAGTTCAGAGTGTT	9986	False	NA	-1	True	NA	NA	NA	3710	1103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1953_2294
97598	chr9	-	4014	7	ISM	ENSMUSG00000050730.18	ENSMUST00000093893.12	6116	23	229754	247	229553	-247	3prime_fragment	FALSE	canonical	3	47	junction_2	9.90650740114239	41	8	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCATGCAGTGTGAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	9009352	8994576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_8997687_8998166_8998247_9003620_9003684_9005734_9005892_9006257_9006642_9007968_9008114_9009277
97600	chrX	+	2305	2	Intergenic	novelGene_3899	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTAACTGTCTTGGCT	NA	False	NA	NA	False	NA	NA	NA	29483412	29488592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_29485560_29488434
97601	chr15	+	791	6	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	9	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5135.52468984426	6	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788286	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788862_76789017_76789179_76790021_76790172_76790320
97602	chr7	+	3102	3	NNC	ENSMUSG00000109511.2	novel	2722	2	NA	NA	44	1022	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	493	87	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCTTGTTCAGGATTGTA	414	False	NA	NA	False	NA	NA	NA	44465850	44481258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44465908_44477910_44478439_44478741
97603	chr12	+	761	4	NNC	ENSMUSG00000079179.10	novel	812	4	NA	NA	-11	67	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	88.649121071033	8	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTCATAGTTGTGCTCT	NA	False	NA	NA	False	NA	NA	NA	3285514	3288340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3285863_3287346_3287413_3287590_3287661_3288063
97605	chr8	+	1128	4	Antisense	novelGene_ENSMUSG00000031633.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	25	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCGATGCCACCTGCCAGG	NA	False	NA	NA	False	NA	NA	NA	46660215	46663904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_46660660_46661435_46661578_46662059_46662543_46663845
97606	chr4	+	2605	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14329	768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	40.1084467413038	2	44	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145158980	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145160318_145160385_145163613_145163744_145173173_145173342_145176036
97607	chr14	-	1896	8	NIC	ENSMUSG00000007589.10	novel	2956	9	NA	NA	8	1104	intron_retention	FALSE	canonical	3	280	junction_5	42.0165176460644	1	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTAGGTCATTCCTCCG	NA	False	NA	NA	False	NA	NA	NA	55919194	55916559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55916867_55916970_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
97608	chr13	-	4579	7	NNC	ENSMUSG00000112964.2	novel	1332	4	NA	NA	-30901	3065	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.0717357868282	200	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTCAAGTGCATGGAA	NA	False	NA	NA	False	NA	NA	NA	74642449	74579834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74583637_74583720_74583936_74585699_74585761_74585978_74586106_74610700_74610786_74610888_74611139_74642410
97609	chr5	-	1986	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	-74	8	-74	-8	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	5	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	8815	False	NA	NA	False	NA	NA	NA	142892583	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
97610	chr4	+	4101	12	Fusion	ENSMUSG00000078503.10_ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	-2	-14	multi-exon	TRUE	non_canonical	0	0	junction_1	158.251499803581	6	37	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTTTAACAAGGTTGAC	924	False	NA	NA	False	NA	NA	NA	145237358	145430997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237388_145311796_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145419170_145419307_145422720_145422806_145425813_145425941_145427474_145428621_145428705_145429340_145429675
97612	chr13	+	4890	7	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	0	2786	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	115.399908530678	15	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGTTTAATTTTATTTAT	NA	False	NA	NA	False	NA	NA	NA	62277715	62324019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62289822_62289984_62317255_62317383_62317567_62317629_62318963_62321007_62321090_62321979_62322536
97613	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
97614	chr11	-	2105	6	NNC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-3163	21	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	18.3477519058875	17	4	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAAAATCTCTGACTAT	NA	False	NA	NA	False	NA	NA	NA	106946879	106933845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106934652_106937825_106938170_106943614_106943841_106944048_106944132_106945680_106946145_106946697
97615	chr17	+	1000	1	Intergenic	novelGene_231	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTAGAAAGTCGGCTCGG	NA	False	NA	NA	False	NA	NA	NA	40154915	40155915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154900_40155900
97616	chr2	+	2356	7	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1170.05936459082	3	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	162916616	162926608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922856_162924469_162924620_162925085
97617	chr13	-	1031	1	Intergenic	novelGene_1476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTTTGCTGTGATCACT	1942	False	NA	NA	False	NA	NA	NA	74752411	74751380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_74751400_74752400
97618	chr14	-	4773	23	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-60	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.7271621321898	56	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655297	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650184_54650242_54651024_54651105_54651336_54651471_54654045_54654228_54655205
97619	chr3	+	2690	16	NNC	ENSMUSG00000027680.16	novel	2129	17	NA	NA	-4	-352	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	332.58191305134	1	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTGATTTTTAACTT	NA	False	NA	NA	False	NA	NA	NA	34093675	34124119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101788_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
97620	chr17	+	5901	16	NIC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-1	-1357	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	38.3054391264043	43	84	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACTTCATTTATTATTAT	9389	False	NA	NA	False	NA	NA	NA	36152566	36169205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354
97621	chr4	+	1749	1	ISM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	26449	232	22324	-232	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAAAGAGTATCTGGC	5330	False	NA	NA	False	NA	NA	NA	145263777	145265526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_145263800_145265500
97622	chr4	+	2727	18	NIC	ENSMUSG00000029056.14	novel	2706	20	NA	NA	0	-8	intron_retention	FALSE	canonical	3	67	junction_14	32.1685655414807	36	10	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCATCTGGTGA	NA	False	NA	NA	False	NA	NA	NA	155048589	155065383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063411_155063483_155063948_155064050_155064182_155064252_155064951
97624	chr10	-	5979	23	NIC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	0	-5	intron_retention	FALSE	canonical	3	60	junction_22	76.4920592216404	3	59	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAATCTGTGTAGTTCCTT	NA	False	NA	NA	False	NA	NA	NA	62628035	62579711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
97625	chr11	-	753	1	Intergenic	novelGene_2194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTTAAAAAAAACCCACAA	NA	False	NA	NA	False	NA	NA	NA	3606176	3605423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_3605400_3606200
97627	chr19	+	3812	16	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	38	-315	intron_retention	TRUE	canonical	0	0	junction_12	227.254394896996	11	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGGGAAGAGTAAACATAT	3507	False	NA	NA	False	NA	NA	NA	8919276	8929352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8927028_8927518_8927754_8928275_8928395_8928499_8928649_8928853
97628	chrX	-	4490	9	NNC	ENSMUSG00000031166.14	novel	4374	9	NA	NA	-68	2	intron_retention	FALSE	non_canonical	0	0	junction_1	13.536409235835	6	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAATGTTGCTGGTTAG	7150	False	NA	NA	False	NA	NA	NA	7998818	7989560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7991383_7991486_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623
97629	chr5	-	2667	8	ISM	ENSMUSG00000032661.10	ENSMUST00000044833.9	4720	16	15912	-52	-4094	52	3prime_fragment	FALSE	canonical	1	3	junction_5	2.43276948084663	34	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCCCAAGTAATGTGACC	7707	False	NA	NA	False	NA	NA	NA	120899814	120891110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_120892441_120892620_120892769_120894091_120894331_120894969_120895146_120896777_120897064_120897985_120898160_120899189_120899335_120899645
97630	chr2	+	797	1	Genic_Genomic	ENSMUSG00000027367.17	novel	NA	NA	NA	NA	721	46	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGACTGGTGCCGCAG	NA	False	NA	NA	False	NA	NA	NA	127126874	127127671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_127126900_127127700
97631	chr2	+	1256	1	Antisense	novelGene_ENSMUSG00000083773.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	58	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTCACATTTCTTACCTG	NA	False	NA	NA	False	NA	NA	NA	28823438	28824694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_28823400_28824700
97632	chr18	+	1797	3	FSM	ENSMUSG00000024608.12	ENSMUST00000142980.2	662	3	-19	-1116	-18	-6	multi-exon	FALSE	canonical	3	20921	junction_1	3556	26	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAAGCTATTTTGGTTC	NA	False	NA	-35	True	NA	NA	NA	60907718	60911607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60907759_60909472_60909624_60910001
97633	chr3	+	6585	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	-155	-4056	-58	1	multi-exon	FALSE	canonical	1	416	junction_13	300.522177130688	1491	84	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGAGTGTTTGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	151916000	151942464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
97634	chr7	-	922	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	45	1	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	111	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	45109263	45107368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
97635	chr17	+	2831	5	NNC	ENSMUSG00000095193.3	novel	3079	4	NA	NA	-8	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	47.9706941788422	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCTTCGTCATGG	NA	False	NA	NA	False	NA	NA	NA	95172337	95185745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953_95183664_95183915
97636	chr11	+	294	1	Intergenic	novelGene_2499	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	193	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGATCTGAACCCGAC	NA	False	NA	NA	False	NA	NA	NA	108902471	108902765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902500_108902800
97638	chr3	-	3045	18	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	405.323869820625	6	49	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	104725598	104702151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702661_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
97640	chr14	+	3086	9	NIC	ENSMUSG00000040618.8	novel	2784	11	NA	NA	0	-3	intron_retention	FALSE	canonical	3	50	junction_4	532.016447114185	9	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATATTTTTTAAAGTTTA	9014	False	NA	NA	False	NA	NA	NA	55777845	55787471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
97641	chr4	-	1143	2	Genic_Genomic	ENSMUSG00000095937.2	novel	1002	1	NA	NA	-72	179	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_-_91740005_91740114
97642	chr14	+	3223	3	NNC	ENSMUSG00000021846.10	novel	5900	6	NA	NA	53197	235	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	36	29	27	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCCTGCCAGAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	48489369	48496383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_48489493_48490033_48490223_48493472
97643	chr10	+	2037	13	NNC	ENSMUSG00000058799.17	novel	1350	15	NA	NA	14	-3	intron_retention	FALSE	non_canonical	0	0	junction_6	908.352675635038	2	71	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGGGATGCTGTCTCGGT	NA	False	NA	NA	False	NA	NA	NA	111309155	111332742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326323_111326875_111326999_111327947_111328020_111328702_111328843_111329157_111329315_111330031_111330159_111331170_111331237_111331900
97644	chr13	-	1839	6	NNC	ENSMUSG00000117784.2	novel	2241	5	NA	NA	-21	125851	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	6.43117407632541	2	15	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTATGATGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	66963304	66831233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66831432_66958377_66959251_66960341_66960396_66961546_66961719_66961866_66962287_66963182
97645	chr2	-	9254	5	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-86	8030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	25.1632172028936	213	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTATGTGTTTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	177016186	176998282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177005497_177005644_177006909_177007076_177007703_177008856_177008918_177016097
97646	chr17	-	1484	4	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-14	800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4503.49930609521	92	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36149123	36145696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146790_36147118_36147166_36147519_36147629_36148888
97647	chr11	+	1978	18	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-38	34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	248.128036487918	1	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGAGAGAAGATGAGGACA	NA	False	NA	NA	False	NA	NA	NA	115455312	115474643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471711_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
97648	chr11	+	5173	26	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	67	5132	intron_retention	FALSE	non_canonical	0	0	junction_3	62.7942162941779	6	37	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771259	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776158_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785377_84785479_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
97649	chr17	+	1689	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	16	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1089.0974979312	2	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13135284	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138302_13139248_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
97650	chrX	-	2598	10	ISM	ENSMUSG00000031386.15	ENSMUST00000114372.3	8262	26	11036	7021	2114	-2623	internal_fragment	FALSE	canonical	3	303	junction_8	20.2417488143127	1	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTCTATCATGGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	72998921	72993423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619
97651	chr13	-	1621	1	Intergenic	novelGene_1405	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGATTCTCGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	62816408	62814787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_62814800_62816400
97652	chr14	+	8848	38	NNC	ENSMUSG00000060012.10	novel	8865	40	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16.4292315516919	106	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTATGTCCGAGGTCAAG	NA	False	NA	NA	False	NA	NA	NA	64889992	65047061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_64890106_64907072_64907171_64951520_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747_64983939_64984377_64984589_64985894_64986058_64987661_64987809_64988954_64989105_64989416_64989546_64994862_64995034_64995999_64996158_64998117_64998251_65002451_65002599_65003159_65003190_65004802_65004903_65005061_65005189_65005868_65005925_65007990_65008113_65010359_65010537_65013685_65013779_65016762_65016916_65017139_65017218_65019790_65019845_65025856_65025969_65027013_65027148_65040422_65041180_65043479
97653	chr11	-	1278	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	132	223	-2	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	8	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	NA	False	NA	NA	NA	33113074	33102509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
97654	chr15	+	3795	4	NNC	ENSMUSG00000022407.11	novel	466	4	NA	NA	107	33938	intron_retention	TRUE	non_canonical	0	0	junction_3	542.829828051317	6	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAACAAACAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	80848230	80889085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80851403_80851789_80851967_80852862_80853243_80889019
97655	chr15	+	355	1	Antisense	novelGene_ENSMUSG00000067870.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	119	0	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGTTGATGGCAGAACGG	NA	False	NA	NA	False	NA	NA	NA	90648446	90648801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_90648400_90648800
97657	chrX	-	1962	5	NIC	ENSMUSG00000031422.17	novel	1926	4	NA	NA	5	-1	combination_of_known_junctions	FALSE	canonical	3	36	junction_3	1536.30213499819	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642020	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_135635251_135636294_135636372_135640553_135640644_135641694_135641869_135641958
97658	chr17	-	2467	3	NNC	ENSMUSG00000117654.2	novel	1195	2	NA	NA	13345	5809	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	0.5	4	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTGGTGCAAATGATCCC	NA	False	NA	NA	False	NA	NA	NA	33083571	33076826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_33079037_33082096_33082200_33083417
97659	chr4	+	2906	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.6137592968091	1	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637693	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646903_147646979_147647371_147647416_147661481_147661587_147665698_147665826_147667290
97660	chr7	+	704	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	47	0	-1	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	529	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1311	False	NA	NA	False	NA	NA	NA	3707038	3709896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
97661	chr5	+	1309	5	Antisense	novelGene_ENSMUSG00000066551.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTCTCCAGCCAGCGCG	NA	False	NA	NA	False	NA	NA	NA	148985037	148989847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148985723_148986535_148986712_148987104_148987251_148987397_148987562_148989709
97664	chr10	+	4451	27	NIC	ENSMUSG00000039994.16	novel	4385	29	NA	NA	-568	0	intron_retention	FALSE	canonical	3	88	junction_22	64.3047478162847	29	57	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACTTTTGTTGTCTTCCT	7485	False	NA	NA	False	NA	NA	NA	128075701	128088808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087958_128088060
97666	chr15	+	4187	2	Intergenic	novelGene_3237	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	1235	junction_1	0	5	102	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22700814	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22704559_22704652
97667	chr4	+	2406	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	5282	12266	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATGTGTAGCCATATAC	NA	False	NA	NA	False	NA	NA	NA	147597338	147610209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147597348_147598018_147598130_147600725_147601318_147601824_147603399_147610089
97668	chr7	+	835	7	Antisense	novelGene_ENSMUSG00000065822.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19045	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCGCGGGCGGAAG	NA	False	NA	NA	False	NA	NA	NA	99128091	99132858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_99128156_99128474_99128676_99129080_99129270_99130902_99130999_99131467_99131564_99131778_99131908_99132798
97669	chr8	+	3817	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-13	-760	multi-exon	FALSE	non_canonical	0	0	junction_2	666.698132590755	1	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGGCACCATTCTTT	NA	False	NA	NA	False	NA	NA	NA	19834748	20045128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035927_20036160_20039783_20039904_20041811_20042916_20043091
97670	chr13	+	2810	12	Fusion	ENSMUSG00000095909.3_ENSMUSG00000113350.3	novel	1525	4	NA	NA	-39	707	multi-exon	FALSE	canonical	0	0	junction_7	46.2243898269737	18	40	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTATGATGTTTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	66261254	66345280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_66261375_66267450_66267578_66267777_66267839_66325249_66325393_66325840_66326525_66327712_66327791_66334416_66334495_66340135_66340278_66341741_66341914_66342262_66342345_66343066_66343121_66344211
97671	chr5	-	996	6	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCGCCCCACAAAGGCCGC	NA	False	NA	NA	False	NA	NA	NA	129100188	129097563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129097637_129097745_129097831_129097927_129098054_129099064_129099253_129099436_129099608_129099835
97672	chrX	-	6328	30	ISM	ENSMUSG00000064127.14	ENSMUST00000096495.11	6963	31	5621	25	5621	-25	3prime_fragment	FALSE	canonical	3	55	junction_7	16.5101489343952	82	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTTATACAAGTTTCAGA	NA	False	NA	NA	False	NA	NA	NA	12622691	12541632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_12543891_12546482_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12555567_12555700_12559823_12559936_12562391_12562530_12569451_12569722_12569989_12570143_12571326_12571419_12572537_12572685_12572770_12572932_12579821_12579899_12582185_12582321_12583100_12583296_12585829_12585990_12590021_12590101_12594252_12594379_12610955_12611068_12611984_12612136_12612863_12612997_12613707_12613816_12614087_12614217_12614657_12614788_12615402_12615577_12620345_12620452_12622667
97673	chr5	+	200	1	Intergenic	novelGene_900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	192	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACGAGACCGATAGTCAAC	NA	False	NA	NA	False	NA	NA	NA	146197788	146197988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198000
97674	chr17	-	3371	5	NIC	ENSMUSG00000024097.12	novel	1921	7	NA	NA	0	-11	intron_retention	FALSE	canonical	3	1956	junction_1	154.627576777236	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTTTCTAACTAGATG	NA	False	NA	NA	False	NA	NA	NA	80514734	80508756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80509032_80509597_80509634_80510119_80512868_80513276_80513458_80514603
97676	chr11	+	6192	17	NIC	ENSMUSG00000025571.14	novel	6612	18	NA	NA	54	-216	combination_of_known_splicesites	FALSE	canonical	3	46	junction_6	21.6274384463348	45	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACTCTTGTTGAACT	NA	False	NA	NA	False	NA	NA	NA	117611897	117652874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_117614377_117622993_117623207_117624435_117624603_117626797_117626879_117629116_117629175_117630692_117630836_117633752_117633891_117638002_117638123_117640069_117640154_117640402_117640644_117643802_117643971_117646156_117646349_117646788_117646933_117648762_117648958_117649729_117649801_117650449_117650590_117651316
97677	chr17	+	3473	17	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	692.950834745871	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	440	False	NA	NA	False	NA	NA	NA	56610340	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622247_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
97678	chrM	-	404	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAGAAGCCCCCTCAAAT	1131	False	NA	NA	False	NA	NA	NA	15057	14653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14700_15100
97679	chr6	-	3085	9	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	2083	-52	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	183.701481689724	2	110	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTTCACTTTCCAGGT	NA	False	NA	NA	False	NA	NA	NA	49085951	49062208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49064375_49064701_49064816_49065359_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859
97680	chr14	+	6176	39	NNC	ENSMUSG00000060012.10	novel	8865	40	NA	NA	0	572	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	16.9090773700674	1	46	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGAACTATATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	64889990	65044317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_64890106_64907072_64907180_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747_64983939_64984377_64984589_64985894_64986058_64987661_64987809_64988954_64989105_64989416_64989546_64994862_64995034_64995999_64996158_64998117_64998251_65002451_65002599_65003159_65003190_65004802_65004903_65005061_65005189_65005868_65005925_65007990_65008113_65010359_65010537_65013685_65013779_65016762_65016916_65017139_65017218_65019790_65019845_65025856_65025969_65027013_65027148_65037793_65037857_65040422_65041180_65043479
97681	chr10	-	1764	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	177	-1	177	1	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	1	95	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGTGTGCAGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	5755423	5749158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
97682	chr1	-	1599	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	-816	0	-816	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	False	NA	NA	False	NA	NA	NA	24653868	24652269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653900
97683	chr7	+	1212	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	29	-9	29	9	mono-exon	FALSE	NA	NA	NA	NA	NA	26	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	51396423	51397635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
97684	chr3	-	4697	23	ISM	ENSMUSG00000001052.16	ENSMUST00000001079.15	5128	24	19547	5	-221	-5	3prime_fragment	FALSE	canonical	3	129	junction_20	16.7258522124107	100	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCATTGTGGAGTGCAATT	NA	False	NA	NA	False	NA	NA	NA	129835009	129776412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_-_129777656_129777815_129777920_129781335_129781429_129782544_129782650_129783297_129783436_129783943_129784120_129784979_129785091_129786623_129786798_129787378_129787538_129787917_129788042_129789562_129789770_129789989_129790046_129790329_129790449_129793160_129793274_129795953_129796064_129796588_129796716_129798642_129798746_129801059_129801245_129803310_129803544_129805440_129805522_129814186_129814292_129827479_129827624_129834322
97685	chr9	-	731	5	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	1283	53	-67	5prime_fragment	FALSE	canonical	3	9075	junction_4	1688.28263332891	13	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCCAGTGGCACCACGCTG	7153	False	NA	NA	False	NA	NA	NA	78388953	78387013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
97686	chr3	+	5950	10	Antisense	novelGene_ENSMUSG00000055436.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	110	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAACAAAGCACAAACCT	NA	False	NA	NA	False	NA	NA	NA	157716566	157732343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722090_157723445_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477
97687	chr10	-	2371	12	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	371	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	133.058615058636	28	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175950	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105484_62120524_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
97689	chr7	+	3837	22	NNC	ENSMUSG00000033790.12	novel	3905	23	NA	NA	-2	-30	intron_retention	FALSE	non_canonical	0	0	junction_18	21.7509089652899	7	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAAGCAATAAAAGAACAT	NA	False	NA	NA	False	NA	NA	NA	55443936	55480955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475326_55475454_55475980_55476070_55479078_55479180_55480589
97690	chr16	-	3248	22	Intergenic	novelGene_3607	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	38	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTCACGACAGAGCAGC	NA	False	NA	NA	False	NA	NA	NA	20033193	19959864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_19959985_19971657_19971749_19972882_19972975_19975632_19975872_19977884_19978003_19980725_19980885_19989937_19990051_19993242_19993289_19998249_19998424_20004998_20005239_20008086_20008245_20009132_20009238_20011906_20012014_20012390_20012575_20022402_20022662_20024831_20024995_20026371_20026541_20027166_20027328_20028777_20028957_20030315_20030500_20032011_20032144_20033138
97691	chr17	+	1180	1	Intergenic	novelGene_204	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTCCCCTCCTGAGGG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155100
97692	chr5	-	2578	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	34	6	34	6	multi-exon	FALSE	canonical	3	916	junction_1	0	339	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125467044	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
97693	chr4	+	2287	5	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	39.5434887181189	4	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637726	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147661528_147661587_147665698_147665826_147667290_147667753_147668172
97694	chr1	-	469	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	453	-31	453	31	mono-exon	FALSE	NA	NA	NA	NA	NA	7	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86836952	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837000
97695	chr17	+	3489	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	83	14	4	-14	multi-exon	FALSE	canonical	3	1413	junction_6	319.856779473251	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGCCGGGCAGTGGTG	503	False	NA	NA	False	NA	NA	NA	56610403	56630472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
97696	chr16	-	1082	1	Intergenic	novelGene_3854	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTGAAAAAAAAAAAGACACA	NA	False	NA	NA	False	NA	NA	NA	90017498	90016416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_90016400_90017500
97697	chr17	-	4356	4	NIC	ENSMUSG00000024097.12	novel	1921	7	NA	NA	0	2	intron_retention	FALSE	canonical	3	2057	junction_2	130.642854973227	9	124	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGATGTTTTGATTTTTGT	NA	False	NA	NA	False	NA	NA	NA	80514734	80508743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80511662_80511741_80512868_80513276_80513458_80514603
97698	chr4	+	3233	5	Intergenic	novelGene_2083	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	47.9446295219809	7	36	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146370045	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146375377_146375458_146384326_146384431_146388484_146388614_146390758
97699	chr11	-	3360	10	NIC	ENSMUSG00000025155.16	novel	3062	12	NA	NA	3	0	intron_retention	FALSE	canonical	3	815	junction_7	57.9098916900693	2	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTGCAGAGATCTCTAG	NA	False	NA	NA	False	NA	NA	NA	120687212	120680029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682954_120683180_120683326_120683516_120684773_120685093_120685145_120685728_120685838_120686302
97700	chr2	+	2687	12	NNC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	41.9692921980262	102	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTATGCTTGAATTGCTC	NA	False	NA	NA	False	NA	NA	NA	120970911	120987157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120971148_120972573_120972785_120973004_120973136_120973629_120973691_120975169_120975258_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
97702	chr16	-	4700	1	Antisense	novelGene_ENSMUSG00000098371.2_AS_novelGene_ENSMUSG00000098274.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGGTAAAGATGGCGAAGAG	7480	False	NA	NA	False	NA	NA	NA	55791475	55786775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_55786800_55791500
97703	chr13	+	3262	5	Fusion	ENSMUSG00000063905.3_ENSMUSG00000113008.2	novel	327	2	NA	NA	-8730	-233	multi-exon	FALSE	canonical	1	3	junction_2	12.031209415516	101	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651761	65662559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_65651859_65655626_65655758_65658192_65658320_65658519_65658581_65659713
97704	chr7	-	1432	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	71	8	-13	-6	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	29	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398355	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
97705	chr5	+	2366	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	-25	4	16	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	308	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	302	False	NA	NA	False	NA	NA	NA	77099169	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
97706	chr11	-	1345	5	Antisense	novelGene_ENSMUSG00000038845.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.433012701892219	1	85	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAAGGAATAATAATGAC	9662	False	NA	NA	False	NA	NA	NA	95571345	95562211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_95562372_95565961_95566079_95566366_95566510_95568874_95568972_95570517
97707	chr14	-	8365	24	NIC	ENSMUSG00000021952.17	novel	8680	23	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	2	67	junction_22	80.9376057852328	262	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGGTTTGACCATGT	NA	False	NA	NA	False	NA	NA	NA	57902418	57814978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57880791_57880947_57885875_57885982_57902344
97708	chr19	+	3528	18	ISM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	327	4982	31	-1401	intron_retention	FALSE	canonical	3	2606	junction_4	266.443005974122	26	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTTGAAGGTGCAGACAA	697	False	NA	NA	False	NA	NA	NA	10583017	10602201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890
97709	chr12	+	1513	6	FSM	ENSMUSG00000001175.17	ENSMUST00000110082.11	4115	6	92	2510	-2	809	multi-exon	FALSE	canonical	3	3420	junction_5	211.830687106472	19	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	9257	False	NA	NA	False	NA	NA	NA	100165785	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
97710	chr13	-	2758	1	Intergenic	novelGene_1464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACATTTTATGTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	68592965	68590207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_68590200_68593000
97711	chr18	+	2756	6	NNC	ENSMUSG00000024576.15	novel	3204	9	NA	NA	-2	235	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	730.417579196996	7	95	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAATAGTTTATTGTAAC	465	False	NA	NA	False	NA	NA	NA	61688381	61723367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708561_61721587
97712	chr3	+	963	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6429.91232444113	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGCTTAATAATCGGG	NA	False	NA	NA	False	NA	NA	NA	137570349	137572590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570804_137570972_137571280_137571395_137571771_137571902_137572146
97713	chr2	+	4942	12	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-55	972	intron_retention	FALSE	canonical	3	97	junction_1	876.53660118853	17	73	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGCCCCGACTCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	162896551	162925591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896724_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
97714	chr17	+	1738	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	3	108	3	-108	mono-exon	FALSE	NA	NA	NA	NA	NA	65	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCACGGCCCTGGTGGA	NA	False	NA	-22	True	NA	NA	NA	40157246	40158984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
97715	chr11	-	2908	3	Intergenic	novelGene_2301	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	40.5	2	51	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGCAATTTGCAGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	57450923	57433758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57434018_57446218_57446486_57448541
97717	chr9	+	2911	14	NIC	ENSMUSG00000032059.14	novel	463	5	NA	NA	40	197	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	59.440487865033	75	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTATCCTCTAGATAGGCA	NA	False	NA	NA	False	NA	NA	NA	50686885	50755039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_50687284_50687843_50687980_50690269_50690405_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
97718	chr12	+	5558	18	Antisense	novelGene_ENSMUSG00000021009.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	15	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTAAGAGGGCTCTAACAGG	NA	False	NA	NA	False	NA	NA	NA	98643029	98700158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_98644935_98645531_98645698_98646217_98646453_98646621_98646747_98648775_98649000_98649736_98649877_98654450_98655888_98659130_98659221_98659818_98659879_98665091_98665169_98666216_98666304_98670398_98670489_98671350_98671440_98675063_98675134_98675793_98675863_98677058_98677159_98681284_98681448_98699727
97719	chr16	+	2959	9	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_7	731.365236646506	1	45	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22929992_22930293_22930343_22930566
97720	chr7	-	2472	3	ISM	ENSMUSG00000074129.15	ENSMUST00000209927.2	552	7	-16	-3	2	-2	intron_retention	FALSE	canonical	3	15796	junction_2	899	78	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCCTGCCTGGCCTGCC	NA	False	NA	NA	False	NA	NA	NA	44778142	44775348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_44775457_44775538_44775662_44775901
97721	chrM	-	1467	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1393	-5	1393	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTAAAAGTGCACCTGG	9245	False	NA	NA	False	NA	NA	NA	6943	5476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5500_6900
97722	chr4	-	3367	5	Antisense	novelGene_ENSMUSG00000078496.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	97	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCACGAGGCAGCCGAGA	NA	False	NA	NA	False	NA	NA	NA	147600521	147576892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147577037_147592051_147592096_147595207_147595337_147596800_147597035_147597705
97723	chr17	-	2704	7	NNC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	0	-9	intron_retention	FALSE	canonical	3	132	junction_4	765.099703016251	9	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTCTAACTAGATGTT	NA	False	NA	NA	False	NA	NA	NA	80514732	80508754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_80509032_80509597_80509634_80510119_80511662_80511741_80511817_80512403_80512868_80513276_80513458_80514603
97724	chr8	+	3364	4	NNC	ENSMUSG00000071113.5	novel	1836	3	NA	NA	2506	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3.29983164553722	48	8	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTGTGGCCGTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	34584689	34592336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_34585592_34585956_34586766_34587223_34587449_34590908
97725	chr3	+	2928	6	Antisense	novelGene_ENSMUSG00000027663.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.4	68	19	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAAAAGTCGGTCGGAG	NA	False	NA	NA	False	NA	NA	NA	32393745	32419761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_32395843_32397477_32397587_32397703_32397865_32399603_32399736_32415045_32415364_32419650
97726	chr17	-	503	1	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	1451	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATACAGTCCTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	45879211	45878708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45878700_45879200
97727	chr12	+	6572	21	FSM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	-186	0	-50	0	multi-exon	FALSE	canonical	2	3	junction_8	35.8941499411812	84	18	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTGACAGGTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	65012527	65069347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65037714_65037865_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
97728	chr3	+	1044	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	12	3	12	-3	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	58	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3569	False	NA	NA	False	NA	NA	NA	88486926	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
97729	chr5	+	1028	6	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	201	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8627.74091868781	12	40	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAAACTCCGGTCTGG	NA	False	NA	NA	False	NA	NA	NA	115697882	115701565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701340
97730	chr17	-	570	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4805	18	1270	-18	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	8	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45879392	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
97731	chr1	+	2733	17	NNC	ENSMUSG00000026036.18	novel	3769	7	NA	NA	5692	23089	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	74	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCGAACCTGCGCGCCCA	NA	False	NA	NA	False	NA	NA	NA	58502535	58544064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58503447_58505147_58505272_58506808_58506871_58508825_58508994_58510093_58510246_58511463_58511561_58513967_58514103_58515593_58515703_58519409_58519509_58520118_58520315_58522803_58522865_58532799_58532912_58536535_58536627_58539407_58539546_58540483_58540584_58540998_58541046_58543933
97733	chr15	+	2623	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	123	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTACAGCCGCTCCGCAG	78	False	NA	NA	False	NA	NA	NA	36771195	36793833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773014_36775474_36775563_36775646_36775823_36776488_36776614_36790927_36791235_36793724
97734	chr13	-	7468	15	Antisense	novelGene_ENSMUSG00000021413.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	138	80	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGAAGAAGGGACAGGCAG	NA	False	NA	NA	False	NA	NA	NA	35090004	35059569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_35059678_35067213_35068416_35070655_35070796_35072124_35072263_35073494_35073575_35074475_35074688_35076071_35076147_35077743_35077835_35078417_35078566_35079301_35079438_35079947_35080101_35083088_35083207_35083813_35083964_35084344_35084431_35085373
97735	chr7	-	6599	3	Antisense	novelGene_ENSMUSG00000092372.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	14	62	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGGAATTCAAGGCCA	NA	False	NA	NA	False	NA	NA	NA	86221784	86149318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_86152050_86217704_86221316_86221527
97736	chr4	+	1073	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	-36	-8	4	8	multi-exon	FALSE	canonical	3	2371	junction_1	52	202	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGACCTAGAGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	155916079	155917526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_155916528_155916808_155917255_155917347
97740	chr2	+	3495	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_12	428.608237010598	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	659	False	NA	NA	False	NA	NA	NA	26279365	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285619_26285749
97741	chr4	+	2676	4	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	12	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	189.78291692235	1	71	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGTCATTGGTTTACT	NA	False	NA	NA	False	NA	NA	NA	98615041	98626707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615078_98615631_98615708_98621379_98622316_98625079
97742	chr13	-	3424	7	Intergenic	novelGene_1433	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	6.70820393249937	85	12	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCACCCGGAAGATCCC	NA	False	NA	NA	False	NA	NA	NA	66271968	66261264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66261374_66263981_66264138_66264728_66264840_66267448_66267575_66267774_66267837_66269024_66269476_66269559
97743	chr17	-	5034	3	ISM	ENSMUSG00000024241.8	ENSMUST00000068714.7	8436	22	73011	275	73011	-275	3prime_fragment	FALSE	canonical	3	130	junction_1	4	110	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAGCCTATAAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	80714387	80701454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_80706102_80707169_80707289_80714119
97744	chrX	-	5172	17	Antisense	novelGene_ENSMUSG00000000787.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGGAAACTCGCTTGACT	NA	False	NA	NA	False	NA	NA	NA	13160283	13146724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13147395_13150414_13150475_13151153_13151200_13152270_13152404_13153459_13153623_13153702_13153803_13154023_13154158_13154515_13154602_13154809_13154911_13155018_13155180_13155633_13155782_13156076_13156218_13156414_13156600_13156684_13156802_13157138_13157292_13157399_13157540_13157649
97745	chr4	+	3269	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-56	-4	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	152.102070991818	171	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146586427	146623845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586602_146587190_146587370_146597241_146597335_146616526_146616611_146619877_146620005_146621233
97746	chr17	-	1131	5	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-82	2963	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTCCAGCCATGGGGAA	NA	False	NA	NA	False	NA	NA	NA	35821530	35817010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820116_35820296_35820434_35820875_35821040_35821186
97748	chr11	-	5847	39	NNC	ENSMUSG00000002052.7	novel	6488	37	NA	NA	-141693	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	117.158604055166	13076	90	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGAGCGCTTGCCGAGG	NA	False	NA	NA	False	NA	NA	NA	78278506	78097857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78098473_78098875_78099064_78099677_78099845_78099927_78100006_78100249_78100363_78102622_78102748_78102908_78103023_78103494_78103734_78104092_78104289_78107030_78107172_78108662_78108810_78109993_78110142_78110708_78110917_78111946_78112075_78112935_78113104_78113173_78113312_78113595_78113732_78113979_78114057_78115191_78115310_78115421_78115562_78116132_78116329_78116489_78116645_78116772_78116924_78117005_78117136_78117500_78117600_78117716_78117866_78119454_78119598_78119779_78119870_78120222_78120340_78120991_78121094_78121753_78122028_78122598_78122684_78122843_78123037_78123330_78123408_78123500_78123660_78124370_78124535_78203034_78203145_78207188_78207217_78278465
97749	chr16	-	564	1	Intergenic	novelGene_3785	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
97750	chr18	-	2872	9	ISM	ENSMUSG00000024304.15	ENSMUST00000115850.2	3785	15	37023	-146	37023	0	3prime_fragment	FALSE	canonical	2	10	junction_5	4.48434777866302	44	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTTTGAACTTTTTC	2720	False	NA	NA	False	NA	NA	NA	16766103	16721933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_16723411_16734678_16734844_16755184_16755325_16757207_16757442_16757776_16758011_16760624_16760768_16762515_16762770_16765260_16765447_16766064
97752	chr11	+	7418	14	FSM	ENSMUSG00000003119.15	ENSMUST00000107539.8	5912	14	466	-1972	190	1972	multi-exon	TRUE	canonical	3	54	junction_13	16.8635316059493	129	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCACTTTTGCTGCATTGC	NA	False	NA	NA	False	NA	NA	NA	98094350	98144362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_98095237_98101186_98102063_98109899_98110077_98111839_98111980_98113453_98113625_98115267_98115458_98120938_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535
97754	chr7	+	3191	28	NNC	ENSMUSG00000056394.21	novel	3174	28	NA	NA	-150	-2	at_least_one_novel_splicesite	FALSE	canonical	2	58	junction_1	258.091332288531	5	9	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGGTGAGGAGGTCTA	957	False	NA	NA	False	NA	NA	NA	13011088	13045348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13011325_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
97755	chr19	-	5079	3	Genic_Genomic	ENSMUSG00000095993.2	novel	168	1	NA	NA	-4488	1705	multi-exon	FALSE	canonical	3	25	junction_1	12.5	29	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATACCTAATAAAAATTTAA	NA	False	NA	NA	False	NA	NA	NA	61289995	61283634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_61285953_61287055_61287117_61287295
97757	chr15	-	6857	38	NNC	ENSMUSG00000115829.2	novel	1426	3	NA	NA	-420802	-3157	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	65	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCCGCCGCCGCACCCGCT	NA	False	NA	NA	False	NA	NA	NA	35794095	35371755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_35371844_35372077_35372252_35379061_35379177_35417654_35417776_35422451_35422621_35423260_35423442_35430253_35430424_35438855_35439125_35445715_35445810_35446181_35446307_35446768_35446905_35447828_35447922_35448677_35448866_35452238_35452412_35455100_35455296_35456758_35456885_35472027_35472209_35533439_35533574_35534329_35534506_35572204_35572313_35576524_35576671_35597538_35597667_35607273_35607510_35617742_35617962_35623744_35623950_35639996_35640168_35640672_35640788_35642540_35642609_35646116_35646526_35652398_35652513_35668846_35669049_35671442_35671570_35674952_35675097_35709269_35709958_35745788_35745929_35770599_35771007_35792181_35792390_35793981
97758	chr9	-	8911	23	NIC	ENSMUSG00000046111.19	novel	7188	27	NA	NA	56	2659	intron_retention	FALSE	canonical	3	46	junction_3	35.5783386601761	157	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTATCAGTTCTTTTATG	9763	False	NA	NA	False	NA	NA	NA	15269028	15231635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_15234380_15234864_15235010_15235444_15235588_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231_15246602_15246866_15246965_15247144_15247280_15247611_15247716_15247848_15247942_15249490_15249716_15252169_15252278_15252736_15252921_15255419_15255561_15258236_15258333_15262106_15262201_15262986_15263112_15264194_15264396_15265901_15266033_15268921
97759	chr5	+	3952	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-14	intron_retention	FALSE	canonical	0	0	junction_3	628.784902873497	1	63	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTATTTTTAAAAGAGCTA	NA	False	NA	NA	False	NA	NA	NA	108208601	108256856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248861_108251894_108251992_108252131_108252185_108252291_108252397_108254453
97760	chr19	+	3760	10	NNC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	152	-344	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2992.1108037184	14	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCTTCAAGGGAGATGGG	995	False	NA	NA	False	NA	NA	NA	8944556	8955499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8952551_8954367_8954855_8954948_8955074_8955307
97761	chr1	-	1118	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	34	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGGTGGGCGGCGAAGGT	9060	False	NA	NA	False	NA	NA	NA	86458419	86454531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457533_86457691
97762	chr5	+	3258	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	652.936890773782	21	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAGCTAATGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108208603	108256865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251910_108254912
97763	chr12	+	2478	3	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-264	18670	multi-exon	FALSE	canonical	1	1	junction_1	20.5	1	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAACATACTGGAGAG	NA	False	NA	NA	False	NA	NA	NA	18437491	18456749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_18437882_18453327_18453389_18454722
97764	chrM	+	1648	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-270	0	-270	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	19	False	NA	NA	False	NA	NA	NA	9896	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
97765	chr12	+	6197	26	FSM	ENSMUSG00000020590.17	ENSMUST00000048519.17	6231	26	32	2	1	-2	multi-exon	TRUE	canonical	3	72	junction_14	10.0218960281975	78	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGATGTGTTTACTTGG	NA	False	NA	NA	False	NA	NA	NA	35097216	35197476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
97766	chr13	-	2889	3	ISM	ENSMUSG00000074865.12	ENSMUST00000101547.12	2147	4	37198	2	-862	-2	3prime_fragment	FALSE	canonical	3	40	junction_1	19	2	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGTGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	62669127	62664612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_62666545_62667985_62668047_62668231
97767	chr4	+	4519	3	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14313	2888	multi-exon	FALSE	non_canonical	0	0	junction_1	48.5	315	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAATTAAATTGCTGACTA	NA	False	NA	NA	False	NA	NA	NA	145158996	145180346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145173287_145173342_145176036
97768	chr11	-	3632	6	NNC	ENSMUSG00000018727.20	novel	1213	8	NA	NA	-56	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	83.8221927654007	7	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTAGTTGCATTGATTC	NA	False	NA	NA	False	NA	NA	NA	113600408	113589003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_113589493_113590661_113591518_113592305_113594193_113597242_113597396_113599629_113599681_113600212
97769	chr2	-	2917	4	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5506	1737	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	324.32631030423	44	64	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	NA	False	NA	NA	False	NA	NA	NA	177275509	177259259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177261444_177261527_177262087_177263226_177263288_177275396
97771	chr1	-	832	1	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	53455	2780	3019	1734	mono-exon	FALSE	NA	NA	NA	NA	NA	4	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATCTTGATCATGCATAAA	NA	False	NA	NA	False	NA	NA	NA	180918314	180917482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_180917500_180918300
97772	chr8	-	1515	1	Intergenic	novelGene_1592	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGATGTTTTTGTCATT	NA	False	NA	NA	False	NA	NA	NA	20726458	20724943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_20724900_20726500
97773	chr7	-	7090	24	Antisense	novelGene_ENSMUSG00000052707.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	9.7886937596315	68	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGCCGCCGCCGCCGC	NA	False	NA	NA	False	NA	NA	NA	122793790	122723430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_122723554_122723888_122723936_122742969_122743076_122761714_122762099_122768756_122771339_122772446_122772625_122773359_122773541_122774646_122774678_122776042_122776124_122776899_122776955_122778937_122779081_122779760_122779896_122780536_122780668_122781175_122781255_122781466_122781675_122783376_122783510_122785784_122785942_122786572_122786716_122788009_122788117_122789065_122789287_122790719_122790792_122791279_122791422_122791801_122792148_122792485
97774	chr18	-	4284	12	NIC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	0	-4	intron_retention	FALSE	canonical	3	3478	junction_11	579.214415258266	13	95	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAACCAAAACACTTTG	NA	False	NA	NA	False	NA	NA	NA	64649599	64632732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64634947_64636578_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
97775	chr5	-	4843	33	NNC	ENSMUSG00000038095.16	novel	10071	32	NA	NA	-13	1367	at_least_one_novel_splicesite	FALSE	non_canonical	3	12	junction_1	148.49473567584	19	36	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACGAAGTGGACTCTTGTT	NA	False	NA	NA	False	NA	NA	NA	124563990	124511227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_124511736_124512513_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
97776	chr17	-	1396	2	NNC	ENSMUSG00000118642.2	novel	714	4	NA	NA	626	1748	intron_retention	FALSE	non_canonical	0	0	junction_1	0	222	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGGAGCGCGAGCGAAGC	NA	False	NA	NA	False	NA	NA	NA	40159092	40157245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_40158270_40158720
97777	chr2	+	6973	8	NIC	ENSMUSG00000005506.17	novel	7800	13	NA	NA	4748	-1	intron_retention	FALSE	canonical	3	55	junction_6	221.341273113881	463	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGAACTGTTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	90833671	90849834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90843043_90843188_90843582
97778	chr1	-	632	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	49	-27	49	27	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACTCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033714	65033082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033700
97779	chr4	+	827	1	Antisense	novelGene_ENSMUSG00000100863.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCAGCAGTCGAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	91693979	91694806	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91694000_91694800
97780	chr11	+	2840	23	Antisense	novelGene_ENSMUSG00000020929.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.208298895225265	2	105	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTGGAAGGAAAAACAAAGAG	NA	False	NA	NA	False	NA	NA	NA	102729312	102759996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102729725_102729988_102730087_102730261_102730395_102730840_102730947_102731090_102731209_102731995_102732078_102732220_102732354_102732507_102732594_102734174_102734257_102734963_102735066_102736919_102737062_102737409_102737519_102738779_102738977_102740008_102740137_102742581_102742721_102745606_102745695_102746048_102746109_102750822_102750953_102753441_102753603_102755534_102755615_102756393_102756499_102759405_102759479_102759920
97781	chr3	-	4428	22	NNC	ENSMUSG00000015697.15	novel	4573	22	NA	NA	-13	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	76.2493522518117	1	161	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTACATTTTGGTCTGAAAT	1675	False	NA	NA	False	NA	NA	NA	95264480	95230839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_95231502_95231615_95231705_95232089_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247374_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255311_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
97782	chr2	+	4554	5	Fusion	ENSMUSG00000094932.8_ENSMUSG00000078887.11	novel	1497	4	NA	NA	-3613	2767	multi-exon	FALSE	canonical	1	1	junction_1	15.3683928893037	2	96	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACCCTTTCCTCCCCAA	NA	False	NA	NA	False	NA	NA	NA	175529716	175675808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_175529787_175533277_175533333_175540356_175540484_175670349_175670411_175671567
97783	chr16	+	564	1	Intergenic	novelGene_3786	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
97784	chrX	-	1142	5	NNC	ENSMUSG00000031146.7	novel	1157	5	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	952.105430086395	1	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGAATAAGTTAACTTTT	NA	False	NA	NA	False	NA	NA	NA	7537628	7534182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_7534746_7535165_7535257_7535653_7535739_7535841_7535998_7537381
97785	chr11	+	1815	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	5	-73	-5	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	20	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATCCTCTTGTTGTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
97786	chr12	+	7726	20	FSM	ENSMUSG00000021275.17	ENSMUST00000165978.3	7778	20	43	9	-5	-7	multi-exon	FALSE	canonical	3	17	junction_1	4.72278616298412	59	51	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTCAATTCTCTTAATT	5426	False	NA	NA	False	NA	NA	NA	110855740	110938819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_110855761_110862520_110862809_110881083_110881213_110881780_110881913_110885302_110885461_110892597_110892911_110895465_110895599_110897833_110898167_110899050_110900067_110902709_110902894_110904624_110904799_110906190_110906372_110907886_110908029_110911078_110911320_110912755_110912846_110914135_110914370_110921107_110921257_110934169_110934312_110934725_110934876_110935302
97787	chrM	+	1416	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	408	0	-408	mono-exon	FALSE	NA	NA	NA	NA	NA	6	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCAACCAGCATTCCAGT	-4	True	NA	4	True	NA	NA	NA	11741	13157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13200
97788	chr13	-	2583	15	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	31	24	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_14	2601.15536437019	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTTGTGTAGTAACTT	5384	False	NA	NA	False	NA	NA	NA	58549697	58539126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549606
97789	chr17	+	3510	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-20	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	716.713350889845	1	82	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	479	False	NA	NA	False	NA	NA	NA	56610379	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616573_56617671_56617828_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
97791	chr8	+	2945	19	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	5	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	920.435895461667	33	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760515	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777015_111780520_111780641_111780756_111780844_111781140_111781255_111781650
97792	chr4	+	3575	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43235	2578	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	126.671162200926	126	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533638	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147536170_147536264_147578832_147578938_147592042_147592098_147595209_147595337_147596801_147597042_147597713
97793	chrX	-	6146	23	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	10	-709	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	27.4999624342343	25	211	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAGAAAGAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	49724128	49645336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49647262_49649685_49649884_49651556_49651771_49653689_49653845_49656416_49656571_49659014_49659169_49661929_49662019_49662100_49662229_49666753_49666902_49669215_49669907_49670251_49670533_49672895_49673135_49684337_49684493_49686158_49686241_49687010_49687350_49689620_49689776_49692247_49692403_49694884_49695040_49701581_49701728_49715313_49715382_49716083_49716187_49719767_49719873_49723821
97794	chr10	-	635	6	NIC	ENSMUSG00000061983.8	novel	490	7	NA	NA	2	2	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	56	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTGTATTTCTTG	NA	False	NA	NA	False	NA	NA	NA	23663098	23661093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
97795	chr1	-	3158	17	NNC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-454	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	180.618890467609	1	118	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCTTTTGTAGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	58541029	58501932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508963_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532825_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000
97796	chr11	+	2490	11	NNC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	-26	687	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	122.766444926942	1	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACCCACCAACCCACCGA	8554	False	NA	NA	False	NA	NA	NA	74661715	74709407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984_74708304_74708393
97797	chrM	+	1140	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	19	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTCTTGATAGTATAAA	-2	True	NA	87	True	NA	NA	NA	14144	15284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
97799	chr8	-	6725	39	Antisense	novelGene_ENSMUSG00000031592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCCGCAGTGCGAACTCC	NA	False	NA	NA	False	NA	NA	NA	41785298	41692673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_41692998_41709029_41709147_41710826_41711071_41712169_41712342_41714045_41714219_41714396_41714513_41720222_41720399_41723474_41723583_41725275_41725498_41727136_41727336_41728031_41728204_41728687_41728843_41728960_41729187_41732784_41732929_41733056_41733187_41735614_41735756_41736590_41736784_41739001_41739198_41740713_41740937_41741043_41741190_41741665_41741857_41743755_41743927_41746491_41746853_41757022_41757183_41762549_41762734_41763048_41763178_41765194_41765311_41766335_41766496_41766879_41767017_41768954_41769088_41774886_41775087_41777989_41778053_41778298_41778437_41778863_41779023_41780561_41780637_41781805_41782088_41783667_41783761_41783840_41783955_41785016
97800	chrX	+	7053	31	NNC	ENSMUSG00000034311.4	novel	4983	30	NA	NA	-5411	-6618	intron_retention	FALSE	non_canonical	0	0	junction_1	115.322952326644	11	146	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTAAAATGTTCAGACCT	NA	False	NA	NA	False	NA	NA	NA	99663931	99761638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_99667034_99667188_99667249_99667466_99667565_99668136_99668196_99668400_99668485_99668893_99668993_99669490_99670195_99670309_99670425_99677444_99677636_99679289_99679385_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721015_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748468_99755397_99755554_99755667_99755769_99757482_99757614_99759186_99759358_99759876_99759995_99761532
97801	chr5	-	1100	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-78	96	multi-exon	FALSE	non_canonical	0	0	junction_1	0	301	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833633	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5831840_5832854
97802	chrM	+	2549	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-967	0	967	mono-exon	FALSE	NA	NA	NA	NA	NA	356	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCATTATGTATGTGACAT	-3	True	NA	22	True	NA	NA	NA	1093	3642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3600
97803	chr9	+	2257	6	Intergenic	novelGene_1134	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	12	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGGAGATGGGGAGAGCACA	NA	False	NA	NA	False	NA	NA	NA	96569755	96634663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_96571082_96600258_96600363_96613344_96613792_96614295_96614367_96633354_96633439_96634438
97804	chr15	+	1395	10	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	4224.96752854788	39	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGGAATGACAACTGTAT	NA	False	NA	NA	False	NA	NA	NA	103148880	103153381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152460_103153027
97806	chr7	-	3482	2	Antisense	novelGene_ENSMUSG00000109155.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	25	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACAGCATTTTCAACAAA	NA	False	NA	NA	False	NA	NA	NA	5351065	5205618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_5208374_5350338
97807	chr7	+	1259	1	Intergenic	novelGene_2979	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGCAACAATGTTTCTC	NA	False	NA	NA	False	NA	NA	NA	67933432	67934691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_67933400_67934700
97808	chr4	-	7286	22	NIC	ENSMUSG00000029016.14	novel	3306	23	NA	NA	-5	-47	intron_retention	FALSE	canonical	3	23	junction_4	24.5640446638869	8	236	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTCACTCTTAAGTCAG	7460	False	NA	NA	False	NA	NA	NA	148123232	148088762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_148091319_148093137_148093264_148093355_148093464_148095110_148095234_148095428_148095587_148097073_148097261_148098132_148098240_148098323_148098484_148098588_148098743_148098957_148101436_148101952_148102120_148102359_148102474_148103297_148103431_148104174_148104234_148105916_148105985_148107823_148107951_148108565_148108673_148110989_148111057_148113006_148113073_148113843_148113910_148122370_148122431_148123137
97809	chr15	-	5270	1	Intergenic	novelGene_3225	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	151	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACAAGACCGTTTTCTCG	9795	False	NA	NA	False	NA	NA	NA	22705095	22699825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699800_22705100
97810	chr11	+	7860	34	NNC	ENSMUSG00000042298.19	novel	3410	10	NA	NA	6594	61261	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	39	28	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATAATTCCTTCTCACGAG	NA	False	NA	NA	False	NA	NA	NA	62206461	62280538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62208855_62210189_62210368_62211820_62212042_62212215_62212274_62216313_62216458_62217933_62218076_62220266_62220481_62220801_62220966_62221621_62221751_62224845_62224985_62225323_62225486_62228368_62228523_62228926_62229074_62229683_62229895_62231236_62231458_62233823_62234177_62235456_62235714_62236059_62236142_62240172_62240322_62242204_62242375_62244061_62244157_62245190_62245299_62245396_62245510_62249675_62249842_62250586_62250760_62257788_62257984_62260117_62260250_62263901_62264404_62267462_62267587_62269339_62269482_62272236_62272297_62273986_62274206_62275547_62275669_62280516
97811	chr5	-	4060	16	NIC	ENSMUSG00000106864.4	novel	4718	18	NA	NA	40	-103	intron_retention	FALSE	canonical	3	433	junction_14	66.7219770557065	28	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTTAGTTATTTCAATCA	NA	False	NA	NA	False	NA	NA	NA	31331805	31313967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575
97812	chr17	-	3530	6	FSM	ENSMUSG00000117284.2	ENSMUST00000233465.2	3474	6	-62	6	-62	-6	multi-exon	FALSE	canonical	2	21	junction_5	14.9853261559434	2	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAACTTGGCTGTTTGTA	NA	False	NA	NA	False	NA	NA	NA	22533880	22504857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_22507883_22508749_22508877_22511388_22511437_22528485_22528579_22532217_22532302_22533727
97813	chrM	+	526	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	408	210	408	-210	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACGAAGCCTAATATTCCGC	1	True	NA	-17	True	NA	NA	NA	14552	15078	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14600_15100
97814	chr13	-	4071	15	NIC	ENSMUSG00000021156.18	novel	4117	15	NA	NA	52	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	43.1802108869896	64	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAACAACTCTTGTCAGTA	NA	False	NA	NA	False	NA	NA	NA	9815144	9734876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_9737021_9739098_9739285_9739487_9739761_9740313_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
97815	chr4	-	9325	8	ISM	ENSMUSG00000057637.14	ENSMUST00000105778.8	7304	10	71	20088	71	-20088	5prime_fragment	FALSE	canonical	3	22	junction_5	9.80420567815628	133	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAACACTTGTGAAAGGAC	NA	False	NA	NA	False	NA	NA	NA	142939204	142854048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_142862670_142868693_142868805_142888625_142888753_142896605_142896759_142905857_142905962_142907446_142907562_142921230_142921305_142939184
97816	chr5	+	845	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8166.15994455166	7	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	121343466	121347029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343901_121344729_121344874_121345209_121345259_121346453_121346639_121346906
97817	chrX	-	5177	1	Intergenic	novelGene_4014	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1571	98	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAGATGGAAAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	116231727	116226550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116226600_116231700
97818	chr5	-	3632	1	NIC	ENSMUSG00000034724.19	novel	8564	12	NA	NA	8138	412	mono-exon	FALSE	NA	NA	NA	NA	NA	2	41	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGTACCTGAATAAACAAAC	NA	False	NA	NA	False	NA	NA	NA	96226654	96223022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_96223000_96226700
97819	chr5	+	387	1	Intergenic	novelGene_938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	163	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
97820	chr4	+	5448	1	FSM	ENSMUSG00000081627.2	ENSMUST00000122007.2	736	1	-578	-4134	-578	4134	mono-exon	FALSE	NA	NA	NA	NA	NA	81	71	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCGGTTGTCCTGAGTGT	NA	False	NA	NA	False	NA	NA	NA	147351251	147356699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_147351300_147356700
97821	chr7	+	1730	13	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	-10	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	356.956609174467	2	41	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCTCTCAGCTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	120234452	120258750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255426_120258229
97822	chr1	+	3619	14	Antisense	novelGene_ENSMUSG00000040225.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	46	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACCGCTTTTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	162505666	162526487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162505793_162507063_162507171_162507388_162507627_162508328_162508466_162508789_162509792_162509886_162510093_162511625_162511826_162515684_162515785_162518707_162518805_162519943_162520194_162520304_162520493_162523845_162523933_162525001_162525841_162526445
97823	chr4	-	2877	20	NNC	ENSMUSG00000019055.16	novel	3243	19	NA	NA	2	-307	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.77920030991	10	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGAGAGATGCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	148021222	147994516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147994971_147995027_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
97824	chr4	-	3713	3	Intergenic	novelGene_2050	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	34	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAATGGCGGAAATTCC	NA	False	NA	NA	False	NA	NA	NA	146438707	146289370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146289522_146368112_146368207_146435239
97825	chr11	+	1553	5	ISM	ENSMUSG00000037331.16	ENSMUST00000071487.13	6614	19	43633	2338	11084	-2338	3prime_fragment	FALSE	canonical	3	480	junction_4	85.6358569759187	1	61	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTCCTTGAGCCTCCG	NA	False	NA	NA	False	NA	NA	NA	57943522	57950519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57943558_57946292_57946438_57947879_57947990_57948086_57948215_57949384
97826	chr6	-	460	2	Genic_Genomic	ENSMUSG00000107176.2	novel	423	1	NA	NA	-26	59	multi-exon	FALSE	non_canonical	0	0	junction_1	0	63	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCTACAGAACTCCAAATAG	NA	False	NA	NA	False	NA	NA	NA	66852753	66852245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_66852373_66852420
97827	chr12	+	5682	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178331.8	812	4	-31	-4839	-9	1702	multi-exon	FALSE	canonical	3	41	junction_3	69.5621225156974	63	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTACAAAAAATACAAGACT	NA	False	NA	NA	False	NA	NA	NA	3285494	3293112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063
97828	chr4	-	2539	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	21	-2	9	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	2	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147726944	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
97829	chr4	-	4210	1	Intergenic	novelGene_1847	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	94	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTACATTCTTAGCCATAT	6006	False	NA	NA	False	NA	NA	NA	52191208	52186998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_52187000_52191200
97830	chr11	-	3136	4	Intergenic	novelGene_2551	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	39	junction_1	17.326921891156	1	91	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAATTGTGAC	NA	False	NA	NA	False	NA	NA	NA	121847478	121832042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_121834966_121836089_121836151_121836329_121836457_121847453
97831	chr13	-	1793	5	NNC	ENSMUSG00000074865.12	novel	2439	5	NA	NA	-81991	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	32.4152741774615	2	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGTGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	62801004	62664612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62665089_62665506_62666545_62667985_62668047_62668231_62668359_62800913
97832	chr16	-	2091	1	Intergenic	novelGene_3667	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCAGCGTCGTTCTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	55145231	55143140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_55143100_55145200
97833	chr2	+	1958	9	NNC	ENSMUSG00000062646.13	novel	3099	5	NA	NA	-48551	-10277	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTTCTTCCGGCTAGG	NA	False	NA	NA	False	NA	NA	NA	120185825	120234561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_120187016_120199720_120199828_120200922_120200982_120216252_120216372_120222660_120222706_120224841_120224956_120227841_120227929_120233190_120233251_120234384
97834	chr15	+	2222	1	NIC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	-8	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	52	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788284	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788300_76790500
97835	chr6	-	2467	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	86	3	86	-3	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	18	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATAAACTCTGGATTTGA	8571	False	NA	NA	False	NA	NA	NA	145021824	144944886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
97836	chrX	-	654	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151693151	151692497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693200
97837	chr9	+	1307	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	6010.40116571594	351	11	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084711_64085038_64085087_64085178_64085300_64085504
97838	chr17	-	696	1	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	1255	-11	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	55	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTATACAGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	45879407	45878711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45878700_45879400
97839	chr4	+	2612	19	NNC	ENSMUSG00000029056.14	novel	2706	20	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_8	37.9167785916134	157	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCATCTGGTGAGAAGCAG	NA	False	NA	NA	False	NA	NA	NA	155048576	155065390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056886_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
97840	chr17	+	1978	1	Intergenic	novelGene_207	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCACGTACGCGTCCG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
97841	chr6	+	1393	8	NNC	ENSMUSG00000036371.7	novel	1336	8	NA	NA	-19	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2646.96988101875	4	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTACCAGTTTAAAGCT	5825	False	NA	NA	False	NA	NA	NA	67243947	67261281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244117_67244155_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254897_67260886
97842	chr11	+	1071	2	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-173	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	41	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATATATGGTGTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	62442328	62444034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442338_62442972
97843	chr4	-	2515	7	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	160	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGATGAAATGGCAGAACT	NA	False	NA	NA	False	NA	NA	NA	145178235	145159006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159031_145160314_145160382_145163610_145163733_145173062_145173196_145173287_145173339_145176033_145176237_145176320
97844	chr7	-	2538	5	Fusion	ENSMUSG00000078580.4_ENSMUSG00000054381.6	novel	3324	3	NA	NA	-27	-22	multi-exon	TRUE	non_canonical	0	0	junction_1	0.433012701892219	18	99	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAATAAAGAAACAAAAACC	9116	False	NA	NA	False	NA	NA	NA	126992828	126971730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_126972005_126982783_126982937_126990094_126991688_126992172_126992287_126992424
97845	chr2	-	1218	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-28	-190	-28	190	mono-exon	FALSE	NA	NA	NA	NA	NA	77	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	28824649	28823431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824600
97846	chr15	-	4150	4	ISM	ENSMUSG00000060036.15	ENSMUST00000188025.7	1781	8	46	-2	46	-1	intron_retention	FALSE	canonical	3	26994	junction_1	2279.23203440691	2	103	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	4387	False	NA	NA	False	NA	NA	NA	79966738	79961992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907
97847	chr4	-	970	1	FSM	ENSMUSG00000081953.2	ENSMUST00000118949.2	1016	1	660	-614	660	614	mono-exon	FALSE	NA	NA	NA	NA	NA	11	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATGAAAAAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	48344570	48343600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_48343600_48344600
97848	chr10	-	1769	5	NNC	ENSMUSG00000019773.8	novel	1940	5	NA	NA	135	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	334.378528018771	1	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGAGGTGTAATGATGTG	NA	False	NA	NA	False	NA	NA	NA	5755465	5749170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_5749823_5750255_5750428_5751168_5751243_5751868_5752533_5755258
97849	chr4	+	2501	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-44	0	multi-exon	FALSE	non_canonical	0	0	junction_2	50.7304970735881	39	19	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147209668	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147576877_147577009_147578832_147578909_147665698_147665826_147667290_147667431_147667838
97850	chr13	+	3653	5	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-175578	1159	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	135.473936607748	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTAGTGCCTTTTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	61987840	62199959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61987998_62174147_62174226_62194994_62195122_62195306_62195368_62196729
97851	chr8	-	4385	2	Intergenic	novelGene_1585	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	74	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCCTATAGGTGGAACAT	NA	False	NA	NA	False	NA	NA	NA	19848397	19843936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_19844248_19844323
97852	chr17	-	4935	11	NIC	ENSMUSG00000024045.7	novel	4570	14	NA	NA	4	-5	intron_retention	FALSE	canonical	3	462	junction_7	63.4924404949125	39	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGTTAAGTCCTAAAACG	NA	False	NA	NA	False	NA	NA	NA	32540155	32523975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32533119_32534415_32534463_32534628_32536321_32536819_32536853_32537744_32537784_32540058
97853	chr17	+	1084	2	Intergenic	novelGene_86	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	94	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095194	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
97854	chr4	+	1991	9	ISM	ENSMUSG00000028601.19	ENSMUST00000130942.8	1319	10	47	-231	-5	-4	intron_retention	FALSE	canonical	3	90	junction_3	233.954289071605	41	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTAGCTTGTGCTGGAAT	NA	False	NA	NA	False	NA	NA	NA	108022709	108036499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567
97855	chr7	+	2507	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	210	5	-2	-2	multi-exon	FALSE	canonical	3	986	junction_1	0	1792	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGACTTGCTGTGAGTATG	285	False	NA	NA	False	NA	NA	NA	44465721	44480231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
97856	chrM	+	2062	2	Genic_Genomic	ENSMUSG00000064367.1	novel	1824	1	NA	NA	2	555	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAATTCAACTACAGAAACA	-2	True	NA	6	True	NA	NA	NA	11743	14120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13601_13915
97857	chr4	+	8102	4	Antisense	novelGene_ENSMUSG00000028575.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	61	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATCCAACCAACCAACCA	NA	False	NA	NA	False	NA	NA	NA	94779413	94816449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_94779799_94780138_94783646_94802218_94806212_94816232
97858	chr9	-	842	3	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2242	8	19	-8	3prime_fragment	FALSE	canonical	3	15409	junction_1	167.5	19	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCTGTGTTGGTCAATG	9342	False	NA	NA	False	NA	NA	NA	78386764	78385738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559
97859	chr17	+	1363	2	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1131	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTCACCGTGGTAGG	2519	False	NA	NA	False	NA	NA	NA	36145696	36147562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36146942_36147444
97860	chr7	+	1402	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3586.77887440494	7	14	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498432_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503497_46504512
97861	chr13	-	3981	1	Intergenic	novelGene_1485	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCGAGTAGCTGAGTAAG	NA	False	NA	NA	False	NA	NA	NA	80853190	80849209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_80849200_80853200
97862	chr16	-	7694	27	FSM	ENSMUSG00000060657.9	ENSMUST00000090300.6	7751	27	58	-1	58	1	multi-exon	TRUE	canonical	2	10	junction_23	10.0957692234429	118	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAATGAGTGCTTTTGTT	9874	False	NA	NA	False	NA	NA	NA	13977073	13927035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_13929636_13932046_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944034_13944919_13945123_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433_13950671_13954801_13954883_13956206_13956386_13958046_13958237_13959506_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
97863	chr11	+	2774	8	ISM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	4	-73	-4	intron_retention	FALSE	canonical	3	3003	junction_1	178.298305416192	11	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242
97864	chr14	-	2839	2	Intergenic	novelGene_626	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	5	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAGATGCCCATGATCA	NA	False	NA	NA	False	NA	NA	NA	88069272	88056002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_88056659_88067089
97865	chr16	-	3989	20	NNC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	414.831848589134	16	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAGTAAGTGAATTCTT	NA	False	NA	NA	False	NA	NA	NA	16176818	16130106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16130615_16130654_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163843_16164010_16176627
97866	chr15	-	8405	9	NNC	ENSMUSG00000053749.13	novel	2752	2	NA	NA	-145594	-604	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	183	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTCCCGGCGGGTGCGC	NA	False	NA	NA	False	NA	NA	NA	55122667	54975862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_54976015_55012735_55012915_55015182_55015308_55044260_55044439_55072125_55072310_55075584_55075720_55078872_55078954_55081563_55081668_55115400
97867	chr9	-	1445	4	Antisense	novelGene_ENSMUSG00000025794.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGGGCCCGCCCTGCCGTG	NA	False	NA	NA	False	NA	NA	NA	120403862	120400580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_120400607_120401160_120401263_120401832_120401927_120402639
97868	chr16	-	378	1	Intergenic	novelGene_3835	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCGTGGAGCCGGGCGT	NA	False	NA	NA	False	NA	NA	NA	57211935	57211557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211600_57211900
97870	chr2	+	2512	10	NIC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	3	-3	combination_of_known_junctions	FALSE	canonical	1	3	junction_5	37.8558017798469	19	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTATGCTTGAATTGCT	NA	False	NA	NA	False	NA	NA	NA	120970915	120987156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_120971148_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
97871	chr4	+	2304	7	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-43159	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	125.592484736238	7	39	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147533714	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147533786_147534439_147534569_147536170_147536196_147595209_147595337_147596801_147597092_147599018_147599262_147668231
97872	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	765	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
97873	chr11	-	1448	12	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	-2581	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	999.796599148758	9	19	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGACGGCTGAAAATTCTG	2620	False	NA	NA	False	NA	NA	NA	88848872	88814847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815082_88815194_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835209_88848847
97874	chr7	-	2478	13	Fusion	ENSMUSG00000114515.3_ENSMUSG00000030695.17	novel	1460	9	NA	NA	-83	-1	multi-exon	FALSE	canonical	3	16	junction_10	9964.05352448936	128	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	8351	False	NA	NA	False	NA	NA	NA	126408363	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459_126399531_126399676_126400167_126406855_126407012_126407267_126407409_126408041
97875	chr13	-	10233	5	Genic_Genomic	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7328	17959	multi-exon	FALSE	canonical	0	0	junction_4	23.3063832457977	147	75	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGCTCCGTCATTAAACT	1866	False	NA	NA	False	NA	NA	NA	66439293	66410990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66417335_66417784_66417928_66431569_66431631_66431830_66435396_66439173
97877	chr18	-	313	3	Antisense	novelGene_ENSMUSG00000025428.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACGACTCAAGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	77870126	77869020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_77869057_77869498_77869648_77869998
97878	chr7	-	1608	10	NIC	ENSMUSG00000052296.8	novel	3862	24	NA	NA	-7	237	combination_of_known_junctions	FALSE	canonical	1	7	junction_9	95.1514711874483	8	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCGTGAAACATGTAAGCT	NA	False	NA	NA	False	NA	NA	NA	4661996	4644057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_4644180_4644263_4644417_4644503_4644667_4644926_4645041_4645134_4645248_4645999_4646066_4646147_4646286_4646367_4646555_4649706_4649940_4661677
97879	chr14	+	1812	4	NNC	ENSMUSG00000002326.7	novel	1993	10	NA	NA	2158	2062	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGACCTGGTCCCAGGGT	NA	False	NA	NA	False	NA	NA	NA	55916571	55918719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_55916866_55916969_55918362_55918458_55918547_55918681
97880	chr4	+	6733	5	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	-23	3814	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	86.5949623246064	247	77	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTTGGTTCCCAAGCCC	NA	False	NA	NA	False	NA	NA	NA	146033844	146067005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146033897_146035050_146035222_146054375_146054480_146058453_146058581_146060726
97881	chr14	+	1940	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	33	2770	-19	1290	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	7	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGCTGCAGTTTCAAG	NA	False	NA	NA	False	NA	NA	NA	63359943	63380602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
97882	chr4	+	2766	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43629	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	56.511945639838	3	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTTAATTCAAATGAGC	NA	False	NA	NA	False	NA	NA	NA	145508177	145556508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145508425_145510590_145510684_145519593_145519682_145551778_145551837_145552678_145552780_145554329
97883	chr6	+	3304	4	Antisense	novelGene_ENSMUSG00000029752.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGCGCAGGGGCGTGGC	NA	False	NA	NA	False	NA	NA	NA	7686278	7693248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_7687880_7687921_7688032_7688070_7689524_7693108
97884	chr1	+	2297	7	NNC	ENSMUSG00000051223.15	novel	1615	10	NA	NA	7264	-805	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	676.238062125067	2	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAGGTTTTATAGATCAG	8493	False	NA	NA	False	NA	NA	NA	58439892	58445707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442897_58443390_58443514_58444193
97885	chr14	+	1143	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-102	-705	-102	705	mono-exon	FALSE	NA	NA	NA	NA	NA	38	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669335	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
97886	chr1	+	2880	1	Antisense	novelGene_ENSMUSG00000102434.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	54	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGGAAAAGGAAATAATCAG	1391	False	NA	NA	False	NA	NA	NA	36070048	36072928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_36070000_36072900
97887	chr4	-	2823	8	Antisense	novelGene_ENSMUSG00000070605.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	39	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAGATGAAACCGCGGAA	NA	False	NA	NA	False	NA	NA	NA	146552848	146206908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146207062_146209388_146209545_146211487_146211613_146312868_146312970_146388484_146388613_146390757_146390903_146391652_146393458_146552638
97889	chr13	-	2921	13	NIC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	8	-31	intron_retention	FALSE	canonical	3	330	junction_9	1908.79331428698	5	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCACATCTAAATAAAACT	4790	False	NA	NA	False	NA	NA	NA	58550291	58539083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_58540291_58541009_58541180_58541505_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
97890	chr4	-	3412	11	Intergenic	novelGene_1857	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTTTACGGCAACTGTCG	NA	False	NA	NA	False	NA	NA	NA	53763177	53714169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_53714194_53720004_53720209_53724603_53724741_53729977_53730038_53731129_53731334_53734847_53735125_53737523_53737627_53744613_53744745_53747003_53747142_53748366_53748497_53761173
97892	chr5	-	2352	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	6	260	6	multi-exon	FALSE	canonical	3	916	junction_1	0	987	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
97893	chrM	+	664	1	FSM	ENSMUSG00000064353.1	ENSMUST00000082404.1	70	1	-662	68	-662	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	73	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	36	False	NA	-33	True	NA	NA	NA	6279	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6300_6900
97894	chr13	+	6966	32	NNC	ENSMUSG00000021666.17	novel	3157	21	NA	NA	0	17162	intron_retention	FALSE	non_canonical	0	0	junction_19	98.3298723060349	561	103	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGAGCTCCCCGCCCGGG	NA	False	NA	NA	False	NA	NA	NA	97274484	97334865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97274535_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97311553_97312107_97313100_97313306_97313409_97313562_97313654_97314386_97314565_97315853_97315924_97317588_97317676_97318339_97318521_97320183_97320314_97322074_97322181_97325472_97325585_97325815_97325859_97327718_97327789_97330631_97330778_97334534
97895	chr4	+	3077	8	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-244115	-1720	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	267.712913550379	12	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTACGGAATCTTAATA	2306	False	NA	NA	False	NA	NA	NA	146289364	146553029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146289526_146428065_146428160_146516836_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437_146550930_146551079
97896	chr7	-	1070	9	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-27412	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	6506.95167566004	2	60	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCCTGACTGGATTGTGT	9686	False	NA	NA	False	NA	NA	NA	99160357	99128090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99131000_99131473_99131562_99131776_99131908_99132798_99132858_99154043_99154221_99160291
97897	chr8	-	7791	49	NNC	ENSMUSG00000036550.17	novel	8390	49	NA	NA	-12	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_31	306.9076604876	54	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATGAAAGAGAAAACTTT	NA	False	NA	NA	False	NA	NA	NA	96534073	96446799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408_96468706_96469731_96469863_96470840_96471019_96471190_96471269_96471570_96471682_96472202_96472320_96473600_96473781_96474886_96475028_96475471_96475703_96478368_96478448_96479129_96479417_96479653_96479779_96481592_96481847_96482687_96482922_96483969_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
97898	chr5	-	7347	30	ISM	ENSMUSG00000043940.16	ENSMUST00000212024.2	10539	65	93447	-3202	-36598	0	3prime_fragment	TRUE	canonical	2	5	junction_29	7.74811549332988	78	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTAAGTTGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	102035977	101980821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_101984148_101991882_101992081_101992413_101992526_101992786_101993111_101994968_101995066_101996188_101996372_101997134_101997315_101999105_101999265_102000088_102000244_102000373_102000522_102003254_102003468_102003670_102003763_102006330_102006485_102008283_102008391_102009229_102009348_102011642_102011763_102011942_102011998_102014062_102014144_102015359_102015446_102015898_102016020_102017826_102017976_102020697_102020862_102023706_102023876_102025871_102025926_102030288_102030517_102030779_102030858_102031908_102032067_102032996_102033180_102034826_102034937_102035952
97899	chr9	-	6549	17	NNC	ENSMUSG00000079469.11	novel	3221	13	NA	NA	29	21841	intron_retention	FALSE	non_canonical	0	0	junction_1	26.4926286917701	281	55	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGCAGGCGTCCGCAGCG	NA	False	NA	NA	False	NA	NA	NA	72946904	72892859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_72892955_72904682_72904751_72906303_72906424_72906741_72906817_72908952_72909157_72912921_72913174_72917577_72917693_72919209_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
97900	chr7	+	2145	11	Antisense	novelGene_ENSMUSG00000030521.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1088	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGCGAGCCGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	64026327	64041966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_64026552_64026914_64027143_64028484_64028594_64030677_64030789_64032638_64032776_64034048_64034118_64035426_64035569_64037196_64037365_64038612_64038772_64039194_64039880_64041853
97901	chr11	+	531	5	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	101	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5254.37698495264	22	3	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCATGCAATAAACTGAAA	4058	False	NA	NA	False	NA	NA	NA	100210811	100212333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100210822_100210922_100210987_100211491_100211656_100211773_100211876_100212142
97904	chr3	+	2006	8	NIC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-4	-231	combination_of_known_junctions	FALSE	canonical	1	68	junction_1	1143.82962196371	6	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTGCAGTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	89986967	90007972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_89987304_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
97905	chr2	-	7285	3	Genic_Genomic	ENSMUSG00000039671.19	novel	5072	22	NA	NA	28453	16884	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	70	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAGCCTTATGACTGCC	NA	False	NA	NA	False	NA	NA	NA	165665589	165652164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_165652330_165657273_165657451_165658646
97906	chr11	-	7770	48	NNC	ENSMUSG00000018501.18	novel	9037	46	NA	NA	155	43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_27	102.837726580027	3	36	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCATGATGTCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	62347994	62208383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224488_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62250586_62250761_62257789_62257986_62260119_62260250_62263908_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645_62301760_62310423_62310607_62313700_62313894_62324388_62324526_62329163_62329342_62347973
97907	chr14	-	2516	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	164	11	0	-11	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	2	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCTTTACCCTGCT	4859	False	NA	NA	False	NA	NA	NA	54754818	54744654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
97908	chr5	-	3753	24	NNC	ENSMUSG00000035325.17	novel	4047	26	NA	NA	-12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	338.089467024138	2	105	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCTTATACAGTTAGTCT	8155	False	NA	NA	False	NA	NA	NA	100564046	100509515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100513710_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531660_100531783_100532982_100533162_100533986_100534063_100538617_100538693_100540253_100540488_100540721_100540875_100541065_100541224_100543660_100543747_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
97909	chr1	+	4861	19	NNC	ENSMUSG00000054412.6	novel	2616	6	NA	NA	-129564	88192	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	42	81	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCGGCATCCTGAACAAA	NA	False	NA	NA	False	NA	NA	NA	135382946	135615878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_135383069_135386393_135386516_135388081_135388193_135388427_135388512_135391458_135391540_135392425_135392497_135393576_135393748_135395378_135395524_135396587_135396638_135397371_135397814_135398224_135398912_135399897_135400195_135400470_135400610_135460086_135460453_135464934_135465042_135512296_135513094_135530282_135530389_135534901_135535642_135615655
97910	chr15	-	3061	12	NIC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	4	-7	combination_of_known_junctions	FALSE	canonical	3	177	junction_11	682.393841833219	2	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGATCTTGACCTTCC	NA	False	NA	NA	False	NA	NA	NA	81284270	81247876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283989
97911	chr3	-	1968	14	NNC	ENSMUSG00000037531.9	novel	3364	7	NA	NA	5643	16882	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	86	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTTCGCGGGCGGGTGA	NA	False	NA	NA	False	NA	NA	NA	32781119	32762663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_32763028_32766014_32766093_32766247_32766424_32768664_32768766_32769563_32769663_32772179_32772236_32772507_32772624_32772715_32772804_32774047_32774112_32774334_32774449_32774581_32774665_32776768_32776862_32779395_32779481_32780668
97912	chr2	-	8194	8	NNC	ENSMUSG00000048911.16	novel	1466	7	NA	NA	3	24097	intron_retention	FALSE	non_canonical	0	0	junction_1	8.45878362462141	134	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACCAGCTTGACCA	NA	False	NA	NA	False	NA	NA	NA	131194798	131115886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_131116187_131135316_131135443_131138190_131145501_131146171_131146252_131147571_131147614_131150394_131150438_131155082_131155233_131194655
97913	chr9	+	3745	9	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	2	2	intron_retention	FALSE	canonical	3	229	junction_6	144.398699353561	74	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCTTTTATAGTTTG	9074	False	NA	NA	False	NA	NA	NA	15217511	15228268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15226428_15226678
97915	chr6	+	1681	1	Antisense	novelGene_ENSMUSG00000004268.12_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	112	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCCCCCTGGAACTGGA	NA	False	NA	NA	False	NA	NA	NA	124682829	124684510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_124682800_124684500
97916	chr7	-	5086	4	NNC	ENSMUSG00000074158.10	novel	1976	4	NA	NA	-12	15	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	40.3567425180312	56	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAGAATTCTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	42292024	42258934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_42263648_42265396_42265458_42265656_42265784_42291839
97917	chr11	-	3346	11	NNC	ENSMUSG00000025155.16	novel	3062	12	NA	NA	2	-3	intron_retention	FALSE	canonical	0	0	junction_5	271.772349586929	12	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAGCATTTGCAGAGATC	NA	False	NA	NA	False	NA	NA	NA	120687201	120680034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120683621_120683853_120685145_120685728_120685838_120686302
97919	chr7	-	3290	6	NIC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	719	-22	intron_retention	FALSE	canonical	2	5	junction_5	15.7683226755416	1	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAATAAAGGAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	107356484	107347683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356391
97920	chr16	-	564	1	Intergenic	novelGene_3787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
97921	chr11	+	6832	26	FSM	ENSMUSG00000020859.17	ENSMUST00000103168.10	6840	26	5	3	5	-1	multi-exon	FALSE	canonical	3	8	junction_1	14.9277727742621	69	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGTGAAGTCTAGTGT	NA	False	NA	NA	False	NA	NA	NA	93935098	94016908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_93935352_93939233_93939385_93958718_93958927_93959761_93959862_93962390_93962513_93972165_93972224_93973585_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
97922	chrM	+	1619	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-290	49	-290	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	4	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTCTTCTAACTACCAG	-1	True	NA	NA	False	NA	NA	NA	9876	11495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
97923	chr2	-	3684	17	ISM	ENSMUSG00000043909.17	ENSMUST00000110648.8	9621	28	35555	3417	-31	-4	3prime_fragment	FALSE	canonical	3	115	junction_12	25.0745762676062	1	66	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAACTGGGATGTCTTCATC	NA	False	NA	NA	False	NA	NA	NA	121066333	121028735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_121029089_121029456_121029603_121030087_121030288_121030783_121030879_121033023_121033240_121034813_121035030_121035400_121035593_121038179_121038611_121038835_121038986_121039561_121039834_121041750_121041904_121046147_121046653_121051638_121051732_121054185_121054244_121058125_121058330_121059068_121059189_121066053
97924	chr17	+	3442	10	NNC	ENSMUSG00000001228.15	novel	949	4	NA	NA	-7974	-27	intron_retention	FALSE	non_canonical	0	0	junction_1	732.22159838112	1	133	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAATAAAATAAAATTCTGG	4578	False	NA	NA	False	NA	NA	NA	56602346	56630459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56602407_56621123_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
97925	chrM	-	829	2	Antisense	novelGene_ENSMUSG00000064342.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	624	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACACTATTAGGGAGAGG	9986	False	NA	-1	True	NA	NA	NA	3710	2757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_3311_3434
97926	chr12	-	2043	6	Intergenic	novelGene_4335	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	13.2	3	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCTTTTCACAAATTTA	NA	False	NA	NA	False	NA	NA	NA	23674598	23663772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23665051_23666055_23666442_23667883_23667947_23668146_23668274_23673797_23673874_23674485
97927	chr5	-	2996	1	Intergenic	novelGene_663	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	84	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGAATTTGTGTATGTAG	NA	False	NA	NA	False	NA	NA	NA	21667693	21664697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_21664700_21667700
97928	chr5	-	1684	5	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-62152	-2	intron_retention	FALSE	non_canonical	0	0	junction_4	1796.50347898355	35	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	142954661	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891208_142954639
97929	chrX	+	4749	4	Antisense	novelGene_ENSMUSG00000081928.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	11.7851130197758	35	82	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAAATTTACTTCTAGTA	NA	False	NA	NA	False	NA	NA	NA	148930485	149182302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_148930725_148930848_148934975_149042539_149042600_149181978
97930	chr3	+	4057	1	FSM	ENSMUSG00000048106.7	ENSMUST00000198527.3	6148	1	42	2049	42	-2049	mono-exon	FALSE	NA	NA	NA	NA	NA	25	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCTTGGTCTATCGTGAG	NA	False	NA	NA	False	NA	NA	NA	19949091	19953148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_19949100_19953100
97931	chr9	-	3440	10	ISM	ENSMUSG00000046111.19	ENSMUST00000160946.8	4144	13	1092	4286	-322	1798	5prime_fragment	FALSE	canonical	3	133	junction_2	23.3238075793812	5	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGGGTAATTATTT	NA	False	NA	NA	False	NA	NA	NA	15243596	15232496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_15234380_15234864_15235007_15235444_15235588_15236802_15237043_15237370_15237474_15237936_15238044_15239091_15239248_15241800_15241945_15242049_15242207_15243231
97932	chr4	+	2483	6	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-12995	774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16.5408585025083	28	12	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145160314	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145160385_145173065_145173196_145173287_145173342_145174456_145174574_145176036_145176245_145176328
97933	chr16	-	546	1	Intergenic	novelGene_3680	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212021	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
97934	chrX	-	1143	8	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGGGGCCCCTGAGCTG	NA	False	NA	NA	False	NA	NA	NA	20548942	20545654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
97935	chrX	-	3435	6	Fusion	ENSMUSG00000072844.7_ENSMUSG00000086695.2	novel	403	2	NA	NA	125	-1436	multi-exon	FALSE	non_canonical	0	0	junction_2	4.8	1	114	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAATCCAGGCCCATCCA	NA	False	NA	NA	False	NA	NA	NA	168769810	168759474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_168760266_168764155_168765249_168766280_168767143_168767924_168768277_168768772_168769003_168769703
97936	chr13	+	2442	5	Antisense	novelGene_ENSMUSG00000114262.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	2	junction_2	13.9283882771841	26	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGACTTAGCTCCATTA	7414	False	NA	NA	False	NA	NA	NA	66737243	66747870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66737350_66740680_66740812_66744311_66744439_66744638_66744700_66745853
97938	chr11	-	2500	1	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	84	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGGTCGATTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	57952860	57950360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57950400_57952900
97939	chr14	-	2826	2	Antisense	novelGene_ENSMUSG00000091617.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAAGAGACCATTTTGAG	NA	False	NA	NA	False	NA	NA	NA	15002082	14920471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_14922982_15001766
97940	chrM	+	1357	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	1047	-580	1047	580	mono-exon	FALSE	NA	NA	NA	NA	NA	8	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	93	False	NA	-4	True	NA	NA	NA	12788	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12800_14100
97942	chrX	+	1613	1	NIC	ENSMUSG00000085715.3	novel	4306	4	NA	NA	-94	-33166	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	32	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAATGCCTGCCACCGG	NA	False	NA	NA	False	NA	NA	NA	102491233	102492846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_102491200_102492800
97943	chr18	-	959	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	21	-15	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	29	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
97944	chr18	+	1294	9	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	-400	-138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1801.38657965885	2	12	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTGTGGGGGTGGGCTC	NA	False	NA	NA	False	NA	NA	NA	77866254	77870217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868761_77868980_77869057_77869498_77869650_77870000
97945	chr18	-	2200	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	38	1064	38	-1064	multi-exon	FALSE	canonical	3	1260	junction_1	0	2	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGTTTTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	37777219	37774607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_37776586_37776997
97946	chr18	-	2967	14	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-3	2	intron_retention	FALSE	canonical	3	155	junction_13	21.055013879536	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTCTAGATGTCTCTAAG	2798	False	NA	NA	False	NA	NA	NA	34884580	34866047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34866447_34866629_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
97947	chr5	+	1263	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-189	-72	189	mono-exon	FALSE	NA	NA	NA	NA	NA	21	69	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	96009500	96010763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
97948	chr12	-	3858	4	Genic_Genomic	ENSMUSG00000113574.2_ENSMUSG00000113569.2	novel	1449	1	NA	NA	-179	1839	multi-exon	FALSE	canonical	3	7	junction_1	18.8030730348939	53	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCCTTGTATTTGGATGT	NA	False	NA	NA	False	NA	NA	NA	22795591	22773303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_22776671_22778007_22778069_22778268_22778396_22795288
97949	chr13	-	2274	3	ISM	ENSMUSG00000074832.12	ENSMUST00000173583.8	515	5	10	13309	10	-1531	5prime_fragment	FALSE	canonical	3	147	junction_1	23	3	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTTTGCAACACCCAGT	NA	False	NA	NA	False	NA	NA	NA	66589169	66579481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_-_66581540_66581739_66581867_66589080
97952	chr2	+	3699	9	NIC	ENSMUSG00000033943.16	novel	6995	21	NA	NA	-9	5237	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	47.8748368143433	3	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTAAGCCTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	119727699	119762409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_119727828_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119752218_119752324_119753908_119754568_119756859_119757203_119762191
97953	chr5	+	1613	7	Intergenic	novelGene_803	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	11.9640665698954	28	2	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTTCAGGATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	110014572	110121506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110014679_110027935_110028063_110028252_110028314_110029628_110029835_110113129_110113219_110114327_110114514_110120668
97954	chr11	-	1112	10	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	8914.99446002196	3	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	NA	False	NA	NA	NA	33113075	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110435_33110827_33110922_33111105_33111183_33111543_33111628_33112921
97955	chr2	+	3860	8	Fusion	ENSMUSG00000026829.10_ENSMUSG00000063611.6	novel	1335	7	NA	NA	-17469	-6	multi-exon	FALSE	canonical	1	1	junction_2	2.0995626366713	29	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAAAAGTTGCCTTGG	NA	False	NA	NA	False	NA	NA	NA	28369433	28397779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_28369616_28386911_28387077_28387680_28387849_28388387_28388454_28392078_28392130_28392208_28392245_28393137_28393273_28394722
97956	chr2	+	3480	7	NNC	ENSMUSG00000027439.10	novel	734	4	NA	NA	-1711	-607	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	36.2801598673435	1	104	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGGTACTTGCTATCC	NA	False	NA	NA	False	NA	NA	NA	148521231	148534262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_148521328_148525513_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626_148532785_148532832
97957	chr4	+	4509	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14301	2904	multi-exon	TRUE	non_canonical	0	0	junction_1	45.7262385167301	1	193	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTATGTAAATGTGACTTAT	NA	False	NA	NA	False	NA	NA	NA	145159008	145180362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159210_145160315_145160385_145176036_145176426_145176512
97958	chr14	+	2088	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	757.345324689076	30	76	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292300_30292919_30293008_30293108_30293203_30294164_30294288_30295293
97959	chrM	+	2617	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	57	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTTCTAGGACAATAGG	-3	True	NA	22	True	NA	NA	NA	1093	3764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3387_3440
97960	chr16	+	4107	6	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_2	609.324215832589	1	127	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927384_22927468_22927602_22928734_22929474_22929875_22930014_22930252_22930343_22930566
97961	chr16	-	546	1	Intergenic	novelGene_3681	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212021	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
97962	chr6	-	3248	13	NNC	ENSMUSG00000030254.17	novel	3535	12	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91.4170844718499	1	89	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTTGTTGTTGTTGTA	NA	False	NA	NA	False	NA	NA	NA	112673619	112603375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112604826_112605172_112605486_112621548_112621709_112626555_112626799_112642247_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
97963	chr10	+	3826	9	NIC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-4	intron_retention	FALSE	canonical	3	5618	junction_8	477.835418842095	352	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	2196	False	NA	NA	False	NA	NA	NA	81012479	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016507_81016637
97964	chr3	+	2897	13	NNC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-5	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	79.3251046152618	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTTACATTATTTTG	6627	False	NA	NA	False	NA	NA	NA	108561259	108586141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108562067_108568670_108568812_108569247_108569352_108570480_108570609_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
97965	chr18	+	5700	2	NNC	ENSMUSG00000024384.5	novel	9613	14	NA	NA	10270	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	81	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAACCAAAATTACACTAA	NA	False	NA	NA	False	NA	NA	NA	32231583	32237370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32236867_32236953
97966	chr11	-	8390	42	NNC	ENSMUSG00000018501.18	novel	8852	45	NA	NA	-9317	790	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_24	105.44854478777	2	46	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTGCCTTTTTTATAAT	NA	False	NA	NA	False	NA	NA	NA	62301693	62206461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62208857_62210191_62210369_62211821_62212044_62212217_62212272_62216312_62216456_62217931_62218076_62220266_62220479_62220801_62220966_62221621_62221751_62224845_62224983_62225321_62225488_62228370_62228521_62228924_62229075_62229684_62229895_62231233_62231456_62233822_62234178_62235457_62235715_62236060_62236145_62240178_62240320_62242203_62242373_62244059_62244161_62245196_62245299_62245396_62245515_62249680_62249842_62257789_62257986_62260119_62260250_62263901_62264281_62267460_62267588_62269340_62269481_62272233_62272297_62273986_62274202_62275543_62275669_62280516_62280619_62281804_62281860_62283330_62283510_62285963_62286055_62289090_62289264_62292026_62292094_62294261_62294289_62294624_62294678_62295235_62295293_62301645
97967	chr16	+	564	1	Intergenic	novelGene_3788	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
97968	chr1	+	7350	30	NNC	ENSMUSG00000041498.14	novel	8770	30	NA	NA	49	1930	intron_retention	FALSE	canonical	3	13	junction_1	12.7319385489885	166	41	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGCCTCCTAATCCAG	NA	False	NA	NA	False	NA	NA	NA	136394129	136457314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_136394385_136395585_136396913_136399057_136399313_136401122_136401211_136404077_136404177_136406096_136406150_136406881_136406913_136407545_136407654_136410125_136410243_136410661_136410778_136414009_136414183_136414772_136414921_136415141_136415206_136417937_136418123_136422365_136422469_136423593_136423758_136424307_136424456_136425100_136425254_136427754_136427882_136430384_136430479_136431047_136431178_136437882_136437984_136441471_136441561_136443591_136443817_136443997_136444180_136447366_136447523_136448927_136449048_136453519_136453595_136454512_136454646_136454983
97970	chr2	-	7804	41	NNC	ENSMUSG00000039834.18	novel	4587	28	NA	NA	159	12514	intron_retention	FALSE	non_canonical	0	0	junction_1	50.4832645537113	257	54	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCGCATGCGTCGGTACC	NA	False	NA	NA	False	NA	NA	NA	164753518	164721287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_164721407_164724691_164724864_164725995_164726143_164726225_164726350_164727278_164727415_164727593_164727732_164727834_164727981_164728412_164728558_164728638_164728725_164728975_164729078_164730269_164730432_164731011_164731184_164731303_164731390_164731470_164731658_164732333_164732427_164732516_164734212_164734299_164734382_164734460_164734527_164734606_164734691_164734797_164734873_164735165_164735270_164735392_164735536_164735620_164735764_164736444_164736820_164736897_164737010_164737907_164738168_164739908_164740004_164740103_164740198_164741176_164741407_164741790_164741952_164742030_164742108_164742197_164742315_164743320_164743451_164744127_164744306_164744415_164744657_164746760_164746908_164749347_164749879_164750074_164750153_164751125_164751364_164752541_164752793_164753436
97971	chrX	-	4404	2	Intergenic	novelGene_3902	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	36	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGGAATTCAAGGCCA	NA	False	NA	NA	False	NA	NA	NA	31047303	30804574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_30807366_31045690
97973	chr14	+	491	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-1	-27	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	0	360	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	46321483	46322430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_46321631_46322086
97975	chr14	+	1270	2	ISM	ENSMUSG00000021846.10	ENSMUST00000228519.2	1629	5	67299	0	53589	0	3prime_fragment	FALSE	canonical	3	72	junction_1	0	7	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATCTCAACTGCCATGC	NA	False	NA	NA	False	NA	NA	NA	48489761	48494281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_48490223_48493472
97976	chr7	-	4845	3	FSM	ENSMUSG00000074158.10	ENSMUST00000107994.3	4868	3	30	-7	-11	7	multi-exon	FALSE	canonical	0	0	junction_2	47.5	28	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATCTCTTCTGAGAATT	NA	False	NA	NA	False	NA	NA	NA	42291982	42258942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_42263648_42265396_42265458_42291903
97977	chr17	+	5866	10	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	48	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTTAGATTCGCTCA	912	False	NA	NA	False	NA	NA	NA	32522645	32540103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32524680_32525462_32525560_32528392_32528523_32529550_32529645_32529925_32530068_32531258_32531350_32533086_32533118_32534415_32534463_32534628_32537786_32540060
97978	chr5	+	1248	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-58	-188	-58	188	mono-exon	FALSE	NA	NA	NA	NA	NA	17	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACACC	NA	False	NA	NA	False	NA	NA	NA	96009514	96010762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
97979	chr17	+	3255	8	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	-17106	4207	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3730.09097662209	5239	89	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTCATGTAGCTTTGAT	6985	False	NA	NA	False	NA	NA	NA	6680404	6707902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6680586_6691899_6692102_6697573_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6705602_6707644
97980	chr6	-	1716	5	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.89711431702997	3	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAACCAAATCAGCCTATC	7529	False	NA	NA	False	NA	NA	NA	122691535	122684573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684879_122688494_122688759_122689580_122689666_122690091_122691100_122691481
97981	chr16	+	3104	10	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	-6	intron_retention	FALSE	canonical	3	675	junction_9	448.081589792653	13	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTATATAGGTGGTCTG	6054	False	NA	NA	False	NA	NA	NA	22926508	22932690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22930014_22930252_22930343_22930566_22930647_22931100
97982	chr9	+	4020	9	ISM	ENSMUSG00000034135.16	ENSMUST00000126865.8	6287	25	195915	109	-10836	-103	3prime_fragment	FALSE	canonical	3	33	junction_1	9.47034846243791	44	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTGCTAAGAGCTTTTGTC	1012	False	NA	NA	False	NA	NA	NA	46120032	46135383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_46120142_46120361_46120448_46120852_46120963_46121773_46122114_46122967_46123861_46130723_46130888_46131507_46131641_46132364_46132533_46133366
97983	chr13	-	2689	5	Intergenic	novelGene_1429	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	83.0523178484502	2	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAAGCCTTTGCGTGTCA	NA	False	NA	NA	False	NA	NA	NA	65960840	65950637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_65951347_65951408_65953125_65954300_65954362_65954561_65954689_65960764
97984	chr17	+	415	2	Antisense	novelGene_ENSMUSG00000117438.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	297	1	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAATTGTTCTTTCTAACT	NA	False	NA	NA	False	NA	NA	NA	82717285	82718324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_82717495_82718118
97985	chr5	-	2973	16	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45630	intron_retention	TRUE	non_canonical	0	0	junction_1	0	8	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256654	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248848_108251883_108251991_108252130_108252184_108252290_108252396_108254452_108255018_108255792
97986	chr10	-	2147	14	Antisense	novelGene_ENSMUSG00000006345.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGACCCAGCTCCTCCC	NA	False	NA	NA	False	NA	NA	NA	75422020	75404472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_75404601_75409444_75409576_75410055_75410230_75411782_75411913_75412047_75412136_75414559_75414756_75415056_75415215_75416332_75416486_75417128_75417265_75420650_75420839_75420988_75421118_75421218_75421331_75421421_75421544_75421718
97987	chr16	-	564	1	Intergenic	novelGene_3789	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
97988	chrM	+	969	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	24	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCATGTCTTGATAGTATA	22	False	NA	-99	True	NA	NA	NA	14168	15282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14586_14730
97989	chr6	-	2806	10	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-1411	-22	at_least_one_novel_splicesite	FALSE	canonical	3	812	junction_9	82.3004132716924	2	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATTGTGTTATTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	71868074	71857648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573
97990	chr15	-	2973	4	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	9	-303	intron_retention	FALSE	canonical	3	23824	junction_2	3509.87723748598	13	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGACCAAACGTCGGGC	4350	False	NA	NA	False	NA	NA	NA	79966775	79962298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962628_79962907_79963010_79963890_79964754_79965096
97991	chr3	-	3413	20	Antisense	novelGene_ENSMUSG00000064738.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGCGGAAGTAACGCAAC	NA	False	NA	NA	False	NA	NA	NA	88802897	88742554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_88742596_88744295_88744826_88761906_88762103_88762932_88763008_88763121_88763172_88763724_88763774_88764431_88764532_88765691_88765812_88766193_88766363_88770722_88770919_88776055_88776158_88777107_88777151_88787377_88787487_88794217_88794409_88794862_88794953_88796977_88797144_88798117_88798265_88799824_88799976_88801748_88801864_88802124
97992	chr11	-	1266	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-191	-73	191	mono-exon	FALSE	NA	NA	NA	NA	NA	12	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAGCCTTTA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
97994	chr8	-	3972	13	NIC	ENSMUSG00000004319.16	novel	4175	14	NA	NA	5	-22	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	80.1138079373476	1	114	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGATTAAAATTTATAAAAT	NA	False	NA	NA	False	NA	NA	NA	61436268	61364978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_61366210_61367786_61367863_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
97996	chr18	-	4134	20	NNC	ENSMUSG00000048799.9	novel	4554	21	NA	NA	-17	-364	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	82.0579148226516	1	69	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTAACAAAGTCTTTGTC	NA	False	NA	NA	False	NA	NA	NA	53877652	53815158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857421_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
97997	chr1	-	2585	13	NNC	ENSMUSG00000097760.3	novel	1540	2	NA	NA	-21468	-681	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	25	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAAGACCAGCTAATGGT	NA	False	NA	NA	False	NA	NA	NA	132426270	132404477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_132404867_132405044_132405281_132412478_132412656_132417324_132417466_132418158_132418322_132420288_132420399_132421550_132421670_132421755_132421913_132422007_132422080_132422594_132422710_132423940_132424012_132424534_132424766_132425666
97998	chr7	-	1297	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-15	-171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6691.12874913493	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGCTGCTCCATCAACAC	NA	False	NA	NA	False	NA	NA	NA	126398357	126394578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395093_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
97999	chr15	-	2942	3	Fusion	ENSMUSG00000023004.9_ENSMUSG00000072235.7	novel	1743	4	NA	NA	2723	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	0	35	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAGTTTTGTTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	98848861	98829313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_-_98829943_98830050_98832299_98848796
98000	chr17	+	1285	1	ISM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	5669	0	1538	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	NA	False	NA	-60	True	NA	NA	NA	29318411	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29318400_29319700
98001	chr9	-	1220	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCGAATGGGAGCTTTGA	NA	False	NA	NA	False	NA	NA	NA	64085788	64082204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64082581_64082863_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
98002	chr6	+	4554	8	NIC	ENSMUSG00000035158.16	novel	2144	9	NA	NA	165	8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	26.6213049558248	81	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCAGTTGTGTCCAGTTC	2620	False	NA	NA	False	NA	NA	NA	97918043	97998318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_97918264_97970087_97970316_97971341_97971426_97973334_97973431_97980847_97980966_97987355_97987432_97990629_97990778_97994734
98003	chr6	+	3517	12	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGACAGGAGACAGTACT	529	False	NA	75	True	NA	NA	NA	122294708	122312044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297012_122297170_122297283_122297896_122298009_122298827_122299043_122299283_122299431_122299965_122300777_122302418_122302908_122310247_122310400_122311028_122311112_122311933
98005	chr17	+	3738	16	ISM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	79	-1	0	1	intron_retention	FALSE	canonical	3	1413	junction_6	325.707776320363	517	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGCGCACGTCTTTAAT	499	False	NA	NA	False	NA	NA	NA	56610399	56630487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
98006	chr4	+	2443	4	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	54	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	70.528166162337	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033968	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146060726_146060916_146061092
98007	chr16	+	1896	5	NIC	ENSMUSG00000055692.22	novel	1721	7	NA	NA	3	1	intron_retention	FALSE	canonical	3	265	junction_3	5.35607132140714	95	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATAGGTGTGTGGGGTTTC	NA	False	NA	NA	False	NA	NA	NA	17094214	17096522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17094333_17094497_17095115_17095205_17095457_17095532_17095756_17095835
98008	chr13	+	2969	4	Fusion	ENSMUSG00000063905.3_ENSMUSG00000113008.2	novel	327	2	NA	NA	-2301	-236	multi-exon	FALSE	non_canonical	0	0	junction_3	14.0554457615387	1	94	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	65658190	65662556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_65658320_65658519_65658581_65659713_65661132_65661195
98009	chr17	+	1076	1	Intergenic	novelGene_224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGCTCCGGTTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	40153927	40155003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155000
98010	chr10	+	2219	15	NNC	ENSMUSG00000058799.17	novel	3934	14	NA	NA	477	-21	intron_retention	FALSE	canonical	3	13	junction_1	605.08874791814	2	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACACAGTTTTAGCTCTC	NA	False	NA	NA	False	NA	NA	NA	111309618	111332724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_111309854_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
98011	chr2	+	4520	16	ISM	ENSMUSG00000036617.18	ENSMUST00000045555.11	5931	19	9586	8003	-158	-909	internal_fragment	FALSE	canonical	3	155	junction_13	21.7128738053922	2	128	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCATGCTCAGCTCTGGC	4638	False	NA	NA	False	NA	NA	NA	20524443	20807332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714415_20718165_20718260_20748269_20749103_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352
98012	chr9	-	3456	17	NIC	ENSMUSG00000032400.19	novel	2957	19	NA	NA	-2	-3	intron_retention	FALSE	canonical	1	5	junction_2	381.245163903754	19	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTGCCTGGTTTAAT	NA	False	NA	NA	False	NA	NA	NA	64080190	64044428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_64045342_64047172_64047299_64054106_64054221_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
98013	chr19	+	4822	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1009.02038576477	4	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1440	False	NA	NA	False	NA	NA	NA	44282485	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44294887_44295146
98014	chr7	-	2756	23	NNC	ENSMUSG00000003435.10	novel	3755	29	NA	NA	-231	-922	intron_retention	FALSE	canonical	2	2	junction_4	253.406008949868	1	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCGACTGGGTGACCACTG	NA	False	NA	NA	False	NA	NA	NA	28029079	28015244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28015352_28015433_28015603_28015707_28015867_28016208_28016311_28016406_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025142_28025210_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028910_28029007
98015	chr2	-	3720	4	FSM	ENSMUSG00000078861.9	ENSMUST00000108924.9	962	4	-28	-2730	2	2730	multi-exon	FALSE	canonical	3	15	junction_1	38.724095283887	5	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTTGCTTCATGGTCA	NA	False	NA	NA	False	NA	NA	NA	177720246	177706757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177710194_177711347_177711409_177711615_177711743_177720150
98016	chr9	+	1323	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	7908.97541396896	27	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085182_64085236_64085504
98017	chr7	-	2792	21	NNC	ENSMUSG00000030738.12	novel	3383	21	NA	NA	-15	-456	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	601.57538804376	1879	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATAGTTGCTTGTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	126165391	126146082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126155924_126155994_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250
98018	chr13	-	6053	36	NNC	ENSMUSG00000021375.12	novel	6866	38	NA	NA	409	-793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	20.2076162647166	28	112	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATTAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	47082784	46904781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_46906349_46914138_46914244_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809_46944984_46947366_46947529_46951817_46951968_46952668_46952808_46954756_46954920_46955991_46956206_46962366_46962534_46962633_46962721_46964166_46964298_46966204_46966340_46967635_46967747_46968685_46968899_46969762_46969875_46977424_46977538_46978681_46978817_46980168_46980257_46984269_46984451_46986199_46986293_47001801_47001865_47082681
98019	chr14	-	9311	12	NNC	ENSMUSG00000022016.18	novel	9364	12	NA	NA	24	-32	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_4	12.2271882389781	74	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATTATTCAATAAATTTA	NA	False	NA	NA	False	NA	NA	NA	78774224	78729717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740466_78745164_78745321_78747319_78751761_78752246_78752512_78753762_78753898_78755612_78755661_78756219_78756337_78760030_78760143_78774151
98020	chr9	+	1280	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1501	147	1483	-147	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	41	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082157	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
98021	chr2	-	1120	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11315	181	multi-exon	FALSE	canonical	0	0	junction_1	0	31	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426156	11413660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414496_11425871
98022	chr17	+	4577	2	Intergenic	novelGene_243	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	139	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTGCAACAAGACCGTT	NA	False	NA	NA	False	NA	NA	NA	40490137	40494832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40490205_40490322
98025	chr3	+	5612	1	Antisense	novelGene_ENSMUSG00000028078.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	200	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCACTGCTGCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	86693476	86699088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_86693500_86699100
98026	chr13	+	2985	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-16	1134	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	63.2336935501952	7	73	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTCTCCTTCAAGAGT	NA	False	NA	NA	False	NA	NA	NA	66261277	66271784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66268998_66269216_66269301
98027	chrM	+	526	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	16	413	16	-413	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGAGGAGCCTGTTCTAT	13	False	NA	-9	True	NA	NA	NA	85	611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_100_600
98028	chr11	+	473	1	Intergenic	novelGene_2501	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCGTCGGATGCCTGCA	NA	False	NA	NA	False	NA	NA	NA	108902471	108902944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902500_108902900
98029	chr12	-	1369	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2749.88108833818	256	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636655_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
98030	chr1	-	3049	20	Antisense	novelGene_ENSMUSG00000102970.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	759	54	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCCGCGCGCTGTCAGGC	9443	False	NA	NA	False	NA	NA	NA	191353674	191307876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_191308062_191314508_191314640_191315289_191315441_191318637_191318689_191323920_191324020_191326539_191326584_191328280_191328483_191328996_191329149_191336881_191337053_191338230_191338331_191339932_191340171_191342474_191342613_191343968_191344176_191345125_191345320_191345748_191345855_191346690_191346758_191347810_191347939_191349921_191350021_191351705_191351892_191353274
98031	chr12	+	2097	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	42	54	42	-54	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	652	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAACTTTCATGGCATACA	NA	False	NA	NA	False	NA	NA	NA	24758281	24764091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
98033	chr4	+	1805	11	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGCCACCTCCCCCGCCT	695	False	NA	NA	False	NA	NA	NA	137469494	137523630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481260_137482934_137483061_137485882_137486043_137523551
98034	chrX	+	2359	15	Antisense	novelGene_ENSMUSG00000031095.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	274.021896935263	15	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGGGAGGGAACACGGGG	NA	False	NA	NA	False	NA	NA	NA	37622137	37653887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_37622608_37625999_37626150_37627828_37628004_37628876_37628985_37629815_37629928_37630927_37631029_37632201_37632295_37633625_37633739_37634373_37634422_37639739_37639819_37640533_37640601_37641258_37641369_37650492_37650602_37652539_37653084_37653807
98035	chr17	+	3764	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	25	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	590.347130402952	1	136	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCAGTGGTGGCGCAC	445	False	NA	NA	False	NA	NA	NA	56610345	56630478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619421_56619803_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
98036	chrX	-	2737	1	Antisense	novelGene_ENSMUSG00000079297.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACACCTCCCTTAAGGTC	NA	False	NA	NA	False	NA	NA	NA	32946627	32943890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_32943900_32946600
98037	chr1	+	6864	7	ISM	ENSMUSG00000026623.17	ENSMUST00000110855.8	7233	8	1514	3	827	-3	3prime_fragment	FALSE	canonical	3	70	junction_2	11.8602979164381	122	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATTGGGTGGCCTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	191451459	191516364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_191451731_191481651_191481771_191488043_191488140_191492085_191492360_191495656_191495784_191508434_191508542_191510494
98038	chr7	+	1233	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	8	3	-7	-3	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	8673	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATACTTGAAGTGTTCATG	1315	False	NA	-81	True	NA	NA	NA	133311069	133322871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
98039	chrM	+	2047	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	326	-791	326	791	mono-exon	FALSE	NA	NA	NA	NA	NA	378	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATCTTCCTAGGACCCC	5	False	NA	-40	True	NA	NA	NA	1419	3466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1400_3500
98040	chr3	+	5155	8	NIC	ENSMUSG00000027804.14	novel	3777	9	NA	NA	52	161	intron_retention	FALSE	canonical	3	2177	junction_3	244.828803160786	9	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTTTTATTTATGACAAA	NA	False	NA	NA	False	NA	NA	NA	79498723	79511118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_79498865_79500916_79501058_79502508_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
98041	chr1	-	704	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	-27	-23	-27	23	mono-exon	FALSE	NA	NA	NA	NA	NA	4	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGCCACTCAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033790	65033086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033800
98042	chr15	-	1472	10	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	9920.80080773053	927	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
98043	chr17	-	2300	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	8	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	4185.87198084222	28	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45884189	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879178_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882822_45884125
98044	chr9	+	1177	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6495.4302001003	518	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082247_64082942_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
98045	chr6	-	1716	5	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.89711431702997	11	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAACCAAATCAGCCTATC	7529	False	NA	NA	False	NA	NA	NA	122691535	122684573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684879_122688494_122688759_122689580_122689666_122690091_122691100_122691481
98046	chr7	-	561	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	116	-52	116	14	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAGATGTTTACTGGC	NA	False	NA	NA	False	NA	NA	NA	92828736	92828175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92828200_92828700
98047	chr4	-	2651	4	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	50	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATGATGAAATGTCGGAA	NA	False	NA	NA	False	NA	NA	NA	145178231	145136853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145137107_145138716_145138849_145160313_145160382_145176033
98048	chr11	-	2279	4	NIC	ENSMUSG00000062825.16	novel	1952	6	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	6581	junction_1	132.032824201661	36	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATTGTTTTTCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	120239318	120236517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120237360_120237462_120237645_120237736_120238924_120239250
98049	chrX	+	3693	7	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAACTCGGGTCCTGAGC	NA	False	NA	NA	False	NA	NA	NA	49652171	49666860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49653845_49656416_49656571_49658153_49659168_49661219_49661588_49661891_49662024_49662102_49662316_49666721
98050	chr9	+	10661	39	Antisense	novelGene_ENSMUSG00000032253.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	29	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCGGCGGAGGCGGAGG	NA	False	NA	NA	False	NA	NA	NA	82748215	82857473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_82753912_82757337_82757541_82758061_82758322_82758778_82758943_82759242_82759395_82762163_82762314_82763372_82763427_82763721_82763792_82766884_82767011_82768673_82768800_82769570_82769723_82772166_82772229_82772413_82772524_82775373_82775459_82775577_82775702_82776285_82776392_82778071_82778195_82782674_82782907_82785176_82785256_82787703_82787843_82788993_82789116_82790747_82790927_82791838_82791982_82795742_82795969_82797350_82797478_82808449_82808584_82809086_82809242_82810152_82810254_82810883_82810925_82811029_82811132_82812359_82812428_82814538_82814640_82814898_82815120_82827809_82827972_82841564_82841663_82841752_82841901_82856722_82856789_82857114_82857200_82857304
98051	chr13	+	3792	5	Antisense	novelGene_ENSMUSG00000114027.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	25	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCCTGTGGAGGCTTGA	NA	False	NA	NA	False	NA	NA	NA	66397154	66417871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66399260_66400349_66401730_66403192_66403334_66408736_66408813_66417781
98052	chr13	-	933	1	Antisense	novelGene_ENSMUSG00000021488.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	13	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTCTTAGAGGTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	55461470	55460537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_55460500_55461500
98053	chrUn_JH584304v1	-	2418	4	Intergenic	novelGene_4685	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_3	301.719884808557	1	59	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGGATGTGTTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	58905	53140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_58563
98054	chr2	-	1244	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-171	-73	171	mono-exon	FALSE	NA	NA	NA	NA	NA	291	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGCACCCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824694	28823450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
98055	chr7	+	1247	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-20	5	-20	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	131	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CACCCACAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396374	51397621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
98056	chr4	+	2259	7	Fusion	ENSMUSG00000086147.3_ENSMUSG00000065999.14	novel	2295	5	NA	NA	-2	-8	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	18	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAAGTTTGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	147056430	147669647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056568_147217303_147217441_147447267_147447373_147536170_147536227_147665698_147665826_147667290_147667431_147668090
98057	chr7	+	2144	9	NNC	ENSMUSG00000059851.16	novel	2774	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	315.647251690871	1	57	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	635	False	NA	NA	False	NA	NA	NA	4743165	4750513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743239_4744778_4744981_4745120_4745239_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749080_4749258_4749370
98058	chr18	+	5905	18	Antisense	novelGene_ENSMUSG00000003778.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	45	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTTGGCGACAGACGCGG	NA	False	NA	NA	False	NA	NA	NA	34734689	34757627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34735303_34735726_34735832_34736761_34736937_34737649_34737722_34737885_34737977_34738526_34738741_34739471_34739520_34739727_34739821_34740090_34740547_34740829_34743001_34743460_34743679_34744181_34744316_34746084_34746154_34746267_34746349_34747499_34747626_34747801_34747851_34749717_34749787_34756506
98059	chr2	+	1277	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11385	216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	131	56	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11413649	11426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414319_11425639
98061	chr13	+	4929	3	FSM	ENSMUSG00000113836.2	ENSMUST00000223499.2	687	3	-312	-3930	67	2350	multi-exon	FALSE	canonical	3	21	junction_2	28	99	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGCTGACCAATTTCGT	NA	False	NA	NA	False	NA	NA	NA	62163485	62201150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62163867_62194994_62195122_62196729
98062	chr17	+	3536	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	50	0	-29	0	multi-exon	FALSE	canonical	3	1413	junction_6	319.856779473251	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	470	False	NA	NA	False	NA	NA	NA	56610370	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
98063	chr5	+	382	1	Intergenic	novelGene_949	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197793	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
98064	chr17	-	2557	9	NNC	ENSMUSG00000036775.14	novel	1993	9	NA	NA	98	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	56.6149273601936	117	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	NA	False	NA	NA	NA	26309096	26300203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26301413_26301459_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
98065	chr14	-	3143	3	Genic_Genomic	ENSMUSG00000071470.5	novel	444	3	NA	NA	5610	-4552	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	162	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGGTAAGATTTTATTCAT	2482	False	NA	NA	False	NA	NA	NA	51039579	51035813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_-_51036085_51036129_51036597_51037174
98066	chr3	+	1971	9	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1123.46678160727	2	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89987003	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90007523_90007619
98067	chr13	-	4254	31	NNC	ENSMUSG00000021311.10	novel	8294	33	NA	NA	-57	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_29	36.5598595912694	3	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGTTGAATACAAGGAGAA	5886	False	NA	NA	False	NA	NA	NA	12273056	12201423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_12201978_12202926_12203040_12204232_12204426_12205089_12205291_12208499_12208697_12210123_12210280_12212798_12212875_12213931_12214031_12215082_12215165_12219628_12219750_12220175_12220244_12227273_12227375_12227556_12227665_12230298_12230452_12231695_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242756_12245830_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262796_12268702_12268865_12272747
98068	chr4	+	2582	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	80	1906	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	47.2040487905669	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145136915	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173130_145173342_145176036
98069	chr12	-	2613	4	Intergenic	novelGene_4343	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	77	27	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTCTATCGTGAGTTC	NA	False	NA	NA	False	NA	NA	NA	30822068	30581075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_30581481_30710618_30711616_30807525_30807686_30821017
98070	chr5	+	6904	10	Genic_Genomic	ENSMUSG00000106767.2_ENSMUSG00000106696.2	novel	2823	1	NA	NA	-9164	3822	multi-exon	FALSE	non_canonical	0	0	junction_1	0	45	79	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCACTATGTAGACAAGGC	1012	False	NA	NA	False	NA	NA	NA	65765127	65788028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_65767535_65772602_65772947_65776285_65776395_65776961_65777109_65777889_65780443_65781262_65781394_65784425_65784543_65784902_65785107_65785340_65785466_65787261
98071	chr7	-	1389	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-13	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7110.3273468661	8	49	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395730_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
98074	chr17	-	4467	10	Antisense	novelGene_ENSMUSG00000116895.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	199	24	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGGTCGCGGCGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	15243876	15230517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_15230532_15231132_15231302_15231889_15232143_15233207_15233312_15233933_15234023_15236449_15236549_15237402_15237537_15238344_15238459_15239224_15239349_15240509
98075	chrX	+	1806	14	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	-5125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	811.712573375051	3	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGGTGCCCAGGGGAA	NA	False	NA	NA	False	NA	NA	NA	20529169	20542314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535206_20536816_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117
98076	chr2	-	4023	5	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-65	2992	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	25.1632172028936	2	124	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGGACAGGCAGAAAC	NA	False	NA	NA	False	NA	NA	NA	177016165	177003320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177005497_177005644_177006759_177007098_177007703_177008856_177008918_177016097
98077	chr2	+	3502	19	NNC	ENSMUSG00000058318.16	novel	2701	19	NA	NA	41	-187	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	7.92246376443373	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGCAAAAAAAAAAATCTTTG	NA	False	NA	NA	False	NA	NA	NA	92015868	92191987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_92015934_92016895_92016955_92044393_92044435_92045808_92045921_92051816_92051961_92058793_92058827_92061000_92061070_92150573_92150805_92157260_92157510_92158656_92158747_92160859_92161154_92174888_92174988_92178340_92178393_92179222_92179303_92179732_92179794_92187195_92187365_92189038_92189115_92189450_92189555_92190513
98078	chr5	+	6543	17	FSM	ENSMUSG00000029094.13	ENSMUST00000064571.11	6618	17	75	0	-71	0	multi-exon	FALSE	canonical	3	11	junction_3	3.8155725323993	65	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTGAGTCGTCACTTC	2080	False	NA	NA	False	NA	NA	NA	36050737	36161267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_36050885_36092895_36093025_36093381_36093477_36102531_36102641_36105378_36105591_36108198_36108379_36119089_36119192_36119548_36119631_36125913_36126064_36131731_36131944_36133835_36133982_36141532_36141651_36146897_36147013_36150884_36151050_36153300_36153492_36154861_36155027_36157042
98079	chr2	-	3146	5	NNC	ENSMUSG00000078865.9	novel	531	4	NA	NA	-23	1732	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	473.102724046269	1	55	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTATGTTTCTGTCTGTCC	2314	False	NA	NA	False	NA	NA	NA	177270026	177259264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177262064_177263226_177263288_177263479_177263607_177266761_177266817_177269922
98080	chr17	+	2091	5	NNC	ENSMUSG00000116802.2	novel	2194	4	NA	NA	42	273	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	45.7329203091165	2	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATATCCCCAAGTATGCT	6266	False	NA	NA	False	NA	NA	NA	17455175	17486598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17455288_17482739_17482867_17483108_17483170_17484473_17485412_17485745
98081	chr17	-	4291	27	NNC	ENSMUSG00000024251.11	novel	2397	11	NA	NA	-5	62395	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	19.3469184739552	4525	50	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGACCAGCAACTGTGG	NA	False	NA	NA	False	NA	NA	NA	84773638	84688404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_84688703_84693938_84694031_84700787_84700911_84702490_84702605_84705622_84705756_84723705_84723816_84730459_84730618_84733566_84733726_84736113_84736251_84736496_84736633_84739606_84739815_84742983_84743139_84744022_84744147_84747422_84747546_84748366_84748523_84749088_84749241_84751245_84751938_84753932_84754154_84755372_84755468_84759136_84759314_84762027_84762086_84762299_84762333_84762446_84762596_84765267_84765399_84766233_84766329_84771784_84771930_84773521
98082	chr6	+	3412	20	NNC	ENSMUSG00000029833.18	novel	3940	19	NA	NA	36	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	130.355745936322	494	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTATTGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	37847781	37943231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_37847882_37848373_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
98083	chr4	+	5804	6	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	-12	59601	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	46.7606672321942	9	166	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTCCTCCCCAACTTGC	NA	False	NA	NA	False	NA	NA	NA	145311760	145411516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145312083_145314001_145314095_145319504_145319576_145327969_145332737_145333176_145333190_145410978
98084	chr15	+	4122	3	Intergenic	novelGene_3235	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCCCTGAGTAGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	22699952	22705088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22700670_22701521_22702315_22702476
98085	chr13	-	4454	4	FSM	ENSMUSG00000113204.2	ENSMUST00000221506.2	1288	4	-10	-3156	-10	964	multi-exon	FALSE	canonical	3	22	junction_3	33.95094500403	11	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACAACAGTGAATGTGTT	4816	False	NA	NA	False	NA	NA	NA	74765831	74752099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74765320
98086	chr2	+	2307	6	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	529	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1259.6015242925	125	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACACATTGTAGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	162917601	162926595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162917696_162919706_162919810_162921513_162921628_162922406_162922743_162924469_162924620_162925085
98087	chr6	+	2113	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	94	4	94	-4	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	1	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGGTCTTATCTTTTG	NA	False	NA	NA	False	NA	NA	NA	122684620	122691588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
98088	chr10	+	1622	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	6	-2	intron_retention	FALSE	non_canonical	0	0	junction_12	465.184095875553	63	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1567	False	NA	NA	False	NA	NA	NA	79690444	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698549_79700047
98089	chr2	+	2784	20	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	4	-1543	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	291.688094714779	1	119	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCTGTATAATTACATTG	7226	False	NA	NA	False	NA	NA	NA	23046533	23087729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052625_23054580_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077859_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899_23087039_23087148
98090	chr4	-	2646	9	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-31923	63754	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	105.900233120612	53	64	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025970	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913157_146913745_146913948_146914367_146914452_146976159_146976629_146976961_146977116_146978205_146978333_146982168_146982279_147021745_147022389_147025871
98091	chr4	-	1041	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-69	30	-69	-30	mono-exon	FALSE	NA	NA	NA	NA	NA	33	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGGCCTACATGGCCTC	NA	False	NA	NA	False	NA	NA	NA	91740975	91739934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739900_91741000
98092	chr12	-	2254	1	Intergenic	novelGene_4330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGACTTCCCCAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	23332662	23330408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_23330400_23332700
98093	chr8	-	1226	3	Antisense	novelGene_ENSMUSG00000055932.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	18	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCTTGAACTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	92327971	92325572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_92326535_92326924_92326999_92327781
98094	chr4	+	6471	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-32	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	151.639572671516	4	157	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	145397222	145431003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397441_145399301_145399395_145422723_145425120_145425453_145425941_145427474_145429336_145429587
98095	chr10	-	2840	18	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	391	24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.851049163533	1	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGCCACCCTTCCAGCAC	NA	False	NA	NA	False	NA	NA	NA	62175930	62105663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105817_62107361_62107591_62110218_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
98097	chr11	-	2089	16	NNC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	190.069881885584	1	75	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	NA	False	NA	NA	NA	84020422	83969745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984405_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017860_84020362
98098	chr1	-	1111	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCGGTGGGCGGCGAAGGT	9066	False	NA	NA	False	NA	NA	NA	86458413	86454531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
98099	chr1	-	2274	3	FSM	ENSMUSG00000026202.14	ENSMUST00000187103.2	815	3	1	-1460	1	-3	multi-exon	FALSE	canonical	3	248	junction_1	30.5	51	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTTTGTGCTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	75195886	75191618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75193620_75193855_75194079_75195836
98100	chr19	+	2401	9	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46155	674	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	42.7777687590178	159	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGTGTCTCTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	46807943	46867692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46808062_46842339_46842484_46845274_46845413_46845605_46845671_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
98101	chr12	+	2047	1	Antisense	novelGene_ENSMUSG00000113612.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTGCTTCTTTGTCA	NA	False	NA	NA	False	NA	NA	NA	17944530	17946577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_17944500_17946600
98102	chr11	+	1871	1	Intergenic	novelGene_2233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	31	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATCCCAGCTCCGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	20424545	20426416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_20424500_20426400
98103	chr12	+	615	1	Intergenic	novelGene_4450	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	256	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTTTAAGTTCTTACCA	2114	False	NA	NA	False	NA	NA	NA	99611319	99611934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_99611300_99611900
98104	chr15	-	2331	6	NNC	ENSMUSG00000022285.18	novel	2285	6	NA	NA	18	-384	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	1669.21123887901	22	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATACCCGCTTCCCCTGCT	1881	False	NA	NA	False	NA	NA	NA	36792640	36771397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36792622
98105	chr3	+	869	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	98	-2	6	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	5	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	NA	False	NA	NA	NA	137570349	137572585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
98106	chr7	-	3135	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	10	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGCGGGGGCCTGCGAGT	9273	False	NA	NA	False	NA	NA	NA	13045351	13012747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016469_13019182_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044903_13045024_13045117
98107	chr1	-	6644	24	NNC	ENSMUSG00000041879.14	novel	4189	25	NA	NA	-3	-10	intron_retention	FALSE	non_canonical	0	0	junction_22	165.172236392374	453	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTCTTCTGTCTCCTGT	NA	False	NA	NA	False	NA	NA	NA	135358174	135310059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_135313216_135313664_135313742_135313956_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348081_135354661_135354780_135358005
98108	chr7	+	5967	19	NIC	ENSMUSG00000030779.17	novel	6184	18	NA	NA	-44	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	37.4024244939374	252	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTTGCAAATGTATATTA	2644	False	NA	NA	False	NA	NA	NA	122564864	122601780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_122565043_122568615_122568706_122570169_122570351_122575158_122575259_122577798_122577836_122582185_122582231_122584215_122584305_122584423_122584524_122584882_122585023_122587824_122587998_122589052_122589157_122589267_122589606_122591191_122591289_122591446_122591526_122591622_122591678_122593892_122593962_122596165_122596529_122597747_122599503_122599806
98109	chr18	+	4820	11	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26629	77	intron_retention	FALSE	canonical	0	0	junction_1	409.78541945755	1	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGACTTGGTTGCTCTT	6456	False	NA	-66	True	NA	NA	NA	77126274	77241109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756
98111	chr12	-	2086	5	Fusion	ENSMUSG00000113506.2_ENSMUSG00000113569.2	novel	1206	4	NA	NA	-1801	137915	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	59	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTATAGTCTCCATTATTT	NA	False	NA	NA	False	NA	NA	NA	22778392	22496214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr12_-_22496266_22633361_22634392_22634727_22635107_22775444_22775954_22778275
98112	chr13	-	3805	14	FSM	ENSMUSG00000041297.9	ENSMUST00000223490.2	12548	14	1560	7183	-69	-38	multi-exon	FALSE	canonical	3	30	junction_2	13.284773505807	53	12	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACCTTTCTCTTGATGCA	NA	False	NA	NA	False	NA	NA	NA	17978122	17892082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_17893497_17893940_17894211_17895672_17895879_17901704_17901837_17902651_17902769_17913501_17913580_17913675_17913778_17924841_17924899_17926255_17926446_17937688_17937860_17939538_17939679_17941020_17941192_17946885_17947543_17978022
98113	chr2	-	2555	2	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	11824	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	108	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGGTGGCACATGCCC	NA	False	NA	NA	False	NA	NA	NA	121325322	121322394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121323354_121323726
98114	chr5	+	387	1	Intergenic	novelGene_939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	487	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
98115	chr13	-	5602	27	NNC	ENSMUSG00000021375.12	novel	6866	38	NA	NA	-5186	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_20	22.3090516827195	50	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAGTGTTGATCGTCTGT	NA	False	NA	NA	False	NA	NA	NA	46967719	46902567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_46904103_46905556_46906349_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924868_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988_46940122_46941533_46941686_46944809_46944984_46947366_46947529_46951817_46951968_46952668_46952808_46954756_46954920_46955991_46956206_46962366_46962534_46962633_46962721_46964166_46964298_46966204_46966340_46967635
98116	chr13	-	3565	5	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7261	-37	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	27.9284800875379	100	65	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATAAAAGAACACATAATG	1333	False	NA	NA	False	NA	NA	NA	67010196	66997751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67000944_67002549_67002611_67002809_67002937_67005568_67005646_67010088
98117	chrX	-	5104	2	Intergenic	novelGene_3941	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	181	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGAGTTAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	63982190	63977041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_63977488_63977532
98118	chr13	+	4213	1	Intergenic	novelGene_1366	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGGTAAGAGCACTGAGT	NA	False	NA	NA	False	NA	NA	NA	49750294	49754507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_49750300_49754500
98119	chr2	+	6031	29	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	7	3706	intron_retention	FALSE	non_canonical	0	0	junction_7	146.229969847609	3	107	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCAAGCTCCACCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	51962850	52001443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968526_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922
98120	chr14	-	3097	3	Antisense	novelGene_ENSMUSG00000021846.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	34	11	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCGTGTCTGTGACCACGA	NA	False	NA	NA	False	NA	NA	NA	48496230	48488017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_48488162_48490033_48490220_48493463
98121	chrM	+	960	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	-3	0	3	mono-exon	FALSE	NA	NA	NA	NA	NA	196	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	109	True	NA	NA	NA	2750	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
98122	chr2	+	630	7	NNC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-6	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2793.52744452839	4	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGAATGGGCTTGGCTG	5796	False	NA	NA	False	NA	NA	NA	32851725	32854049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32851852_32852060_32852156_32852594_32852685_32852996_32853079_32853518_32853596_32853752_32853866_32854002
98123	chr4	+	2250	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-198	774	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.7262385167301	2	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145173111	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145173196_145173287_145173342_145176036_145176243_145176326
98124	chr13	+	4304	3	Antisense	novelGene_ENSMUSG00002076605.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	26	28	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGTCACTTTTGTCC	NA	False	NA	NA	False	NA	NA	NA	61961047	61992318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_61961190_61987672_61990379_61990862
98125	chr10	-	3061	14	Antisense	novelGene_ENSMUSG00000064441.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	78	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAAGAGACCGCTGACGTC	7864	False	NA	NA	False	NA	NA	NA	81018330	81012487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81012573_81013509_81013714_81013886_81014066_81014511_81014726_81014913_81015092_81015177_81015285_81015375_81015627_81015713_81015910_81015984_81016244_81016396_81016505_81016635_81016990_81017059_81017243_81017324_81017459_81017721
98126	chr6	-	4435	12	NNC	ENSMUSG00000040669.15	novel	3839	14	NA	NA	14	-39	intron_retention	FALSE	canonical	0	0	junction_4	396.333735319196	7	99	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAACCCTCTTTCCCAT	9610	False	NA	NA	False	NA	NA	NA	122313960	122294847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297277_122297892_122298012_122298830_122300773_122302416_122302910_122309480_122309631_122310249_122310400_122311028_122311110_122311931_122312043_122313816
98127	chr17	-	2449	12	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	2599	7453	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGGGCGGGGCGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	13143970	13135246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13135515_13136682_13136771_13136929_13137022_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141164_13141493_13141620_13142104_13142297_13142415_13142580_13143145
98128	chr12	+	1031	4	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	-3	221	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	68.3569065030496	24	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGATGCTCTGGGTGGATT	NA	False	NA	NA	False	NA	NA	NA	3285500	3288494	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288028
98129	chr1	+	4556	4	ISM	ENSMUSG00000038866.16	ENSMUST00000119166.8	6368	13	32561	-1	11506	1	3prime_fragment	FALSE	canonical	3	53	junction_1	4.24264068711928	71	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAAGAATTATGCCTTAT	NA	False	NA	-7	True	NA	NA	NA	105950979	105961798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_105950995_105951393_105951489_105955132_105955262_105957481
98130	chr13	+	2037	1	Antisense	novelGene_ENSMUSG00000009470.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4292	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTTTATCCTGTAAGA	NA	False	NA	NA	False	NA	NA	NA	98989689	98991726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_98989700_98991700
98131	chr8	+	3809	3	NNC	ENSMUSG00000079019.3	novel	623	2	NA	NA	801	11227	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	17	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCGAGCTTCCTAGTAGC	4011	False	NA	NA	False	NA	NA	NA	72142658	72154446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72145798_72145958_72146543_72154360
98132	chr1_GL456211v1_random	+	207	1	Intergenic	novelGene_4791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAACTGAAAGACTG	NA	False	NA	NA	False	NA	NA	NA	218233	218440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_GL456211v1_random_+_218200_218400
98133	chr19	-	7877	1	Antisense	novelGene_ENSMUSG00000024989.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	79	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAGGAAGATAAGACCTT	NA	False	NA	NA	False	NA	NA	NA	38052939	38045062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_38045100_38052900
98134	chr19	-	5263	7	NNC	ENSMUSG00000033610.17	novel	7414	7	NA	NA	-2436	-2	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	45.0237591599023	48	67	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGTTCTTAGTGTACATG	NA	False	NA	NA	False	NA	NA	NA	34859291	34788296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_34789788_34791091_34791218_34798499_34798624_34799112_34799290_34804519_34804774_34818156_34818510_34856553
98135	chr14	+	1009	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-183	699	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATATTTTACAGTG	NA	False	NA	NA	False	NA	NA	NA	13669254	13670472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669328_13669536
98136	chr17	+	4310	3	NNC	ENSMUSG00000023902.19	novel	2368	4	NA	NA	7	0	intron_retention	FALSE	non_canonical	0	0	junction_2	140.5	5	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	23	False	NA	NA	False	NA	NA	NA	23824495	23829986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_23827140_23828240_23829786_23829865
98137	chr15	+	3699	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	150	5	59	-5	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	3	52	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGGTTAATGTTGCAG	NA	False	NA	-35	True	NA	NA	NA	101982357	102005603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
98138	chr9	+	7205	8	FSM	ENSMUSG00000032294.18	ENSMUST00000214571.2	2113	8	0	-5092	0	-1138	multi-exon	FALSE	canonical	3	15664	junction_5	1465.84232245004	145	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAAGTGGCCAGGTACCGC	1872	False	NA	NA	False	NA	NA	NA	59563858	59585334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203
98139	chr7	-	449	1	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGGACAGTGAAGTGCT	NA	False	NA	NA	False	NA	NA	NA	46505051	46504602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46504600_46505100
98140	chr4	+	2748	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	375	3	NA	NA	1928	-236	multi-exon	TRUE	non_canonical	0	0	junction_2	185.443648957778	2	48	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATCCTTAAAAGAGTATC	NA	False	NA	NA	False	NA	NA	NA	145138763	145265522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145138851_145143778_145143853_145157298_145157471_145240640_145240715_145257381_145257486_145261385_145261513_145263160_145263905_145264156
98141	chr17	-	2444	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-6	-18	intron_retention	FALSE	non_canonical	0	0	junction_7	3286.68282619422	12	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884187	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881991_45882104_45882338_45882546_45882690_45882838_45884092
98142	chr11	-	4003	23	NNC	ENSMUSG00000087607.2	novel	480	2	NA	NA	-108	87890	intron_retention	FALSE	non_canonical	0	0	junction_1	0.416597790450531	4	48	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCCACATCCCAGACGC	NA	False	NA	NA	False	NA	NA	NA	46035949	45946833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_45947038_45951749_45951837_45955837_45955913_45990663_45990755_46003581_46003777_46004449_46004514_46009244_46009317_46012244_46012414_46013919_46014003_46015832_46015974_46018071_46018249_46019610_46019699_46022445_46022643_46025250_46025359_46027069_46027151_46027237_46027289_46028190_46028264_46028361_46028476_46029663_46029800_46030516_46030603_46030830_46031054_46033741_46033897_46034616
98143	chr5	+	540	1	FSM	ENSMUSG00000058905.6	ENSMUST00000145209.2	414	1	-43	-83	-43	83	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATGGAGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133503918	133504458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_133503900_133504500
98144	chr9	-	1233	1	FSM	ENSMUSG00002076266.1	ENSMUST00020182013.1	121	1	-986	-126	-986	126	mono-exon	FALSE	NA	NA	NA	NA	NA	25	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGGCTGCGTTCAGACAGG	NA	False	NA	NA	False	NA	NA	NA	108531913	108530680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_108530700_108531900
98146	chr2	+	2836	14	NIC	ENSMUSG00000026718.18	novel	5000	14	NA	NA	39	-2	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	92.7549421321626	1	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTATATTCTGATTTTGT	4731	False	NA	NA	False	NA	NA	NA	14078957	14152349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_14079148_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14138453_14138520_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
98147	chr9	+	2399	12	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	0	10	intron_retention	FALSE	canonical	3	69	junction_1	177.429813850365	767	31	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATATATACAGTAAAAAGA	9118	False	NA	NA	False	NA	NA	NA	15217555	15228253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
98148	chr13	+	5161	1	Intergenic	novelGene_1559	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	205	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	113855215	113860376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113855200_113860400
98150	chrX	+	1064	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	171	-25	-171	mono-exon	FALSE	NA	NA	NA	NA	NA	6	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTAAGTCCTTGCTGGT	NA	False	NA	NA	False	NA	NA	NA	13068784	13069848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069800
98151	chr17	+	3212	18	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	3	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	575.748809848116	5	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATTCTGGCCGGGCAG	502	False	NA	NA	False	NA	NA	NA	56610402	56630467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629870_56630142
98152	chr2	+	558	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11303	-47	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCAGCTACAGCAACAGGG	NA	False	NA	NA	False	NA	NA	NA	11413731	11425984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414147_11425841
98153	chr2	-	4144	19	NIC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-7	0	intron_retention	FALSE	canonical	3	560	junction_18	74.3326897497467	72	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5017533	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_4996288_4996905_4996949_4997688_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
98154	chrUn_MU069435v1	-	555	1	Intergenic	novelGene_4736	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	310	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	555	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_600
98155	chr15	+	2944	9	NNC	ENSMUSG00000058655.10	novel	1548	9	NA	NA	55	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	277.212886379764	21	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGGTTAATGTTGCAG	NA	False	NA	-39	True	NA	NA	NA	101982353	102005603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_102003670
98157	chr15	+	4770	2	Antisense	novelGene_ENSMUSG00000105167.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGGAGCCAGTGCAGGC	NA	False	NA	NA	False	NA	NA	NA	79962045	79967556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79966784_79967524
98158	chr11	-	1169	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	2	-169	2	169	mono-exon	FALSE	NA	NA	NA	NA	NA	7	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGCACCCAAAAAAAAAAA	4463	False	NA	NA	False	NA	NA	NA	20286011	20284842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286000
98161	chr4	-	2191	5	NNC	ENSMUSG00000093594.2	novel	2516	4	NA	NA	347	-464	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6.92820323027551	4	73	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCTCGACCTGAGATTAC	9818	False	NA	NA	False	NA	NA	NA	147893950	147867239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147868955_147872194_147872325_147880108_147880186_147891546_147891641_147893775
98162	chr11	-	1024	3	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1584	416	1	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120472390	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469795_120471098_120471220_120472347
98163	chr15	+	4518	1	Intergenic	novelGene_3202	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	85	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCCTAAATGTATTA	NA	False	NA	NA	False	NA	NA	NA	5053398	5057916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_5053400_5057900
98164	chr4	+	2307	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43205	2581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	129.137416042843	1	12	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147533668	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533956_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597042_147597711_147598688_147599995
98165	chrX	+	1805	12	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	12678	473	-2501	-473	3prime_fragment	FALSE	canonical	3	3115	junction_1	295.964762253664	37	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCCATCCTGGCTGTCT	NA	False	NA	NA	False	NA	NA	NA	20541814	20548945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
98166	chr9	+	937	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	100	901	0	-91	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	2	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAGCCACCACTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	119956854	119960534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
98167	chr2	-	4550	2	Genic_Genomic	ENSMUSG00000039671.19	novel	5072	22	NA	NA	32245	16745	multi-exon	FALSE	non_canonical	0	0	junction_1	0	37	39	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTGGTGGTGGGTGGAT	NA	False	NA	NA	False	NA	NA	NA	165661797	165652303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_165652330_165657273
98168	chr4	+	3921	7	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066007.16	novel	4244	5	NA	NA	693	41593	multi-exon	FALSE	canonical	0	0	junction_1	52.4226944069922	7	84	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATCCGCTACGGCTCC	NA	False	NA	NA	False	NA	NA	NA	146094952	146256597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146095022_146200183_146200273_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
98169	chr8	+	6521	39	NIC	ENSMUSG00000004677.18	novel	7297	40	NA	NA	18098	-16	intron_retention	TRUE	canonical	0	0	junction_37	32.1531136078831	99	52	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTACTTGAGAAGGGTTA	1476	False	NA	NA	False	NA	NA	NA	71743496	71813337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_71743781_71767768_71767864_71774425_71774489_71775577_71775678_71775908_71776010_71776507_71776638_71778496_71778587_71780523_71780641_71781189_71781325_71783351_71783474_71785897_71786040_71786270_71786476_71786956_71787039_71789519_71789610_71793403_71793444_71795405_71795529_71796256_71796338_71796733_71796845_71798673_71798797_71800257_71800575_71800974_71801839_71802778_71802834_71803570_71803693_71804530_71804659_71804813_71804990_71806385_71806485_71806605_71806780_71807160_71807200_71807359_71807472_71807881_71807956_71808338_71808532_71808609_71808739_71808928_71809035_71809164_71809297_71810756_71810881_71811259_71811308_71811606_71811738_71811968_71812097_71812201
98170	chr4	+	4019	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159943	182149	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	180.347886042504	146	42	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGGTTGACTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	146426540	146806001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146797298_146797381_146800377_146800518_146802050_146802609_146803029
98171	chr9	-	1329	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	18	-728	18	728	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	3710	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCAGCTTCCTTTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	78275441	78273605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
98173	chrX	-	3662	6	Fusion	ENSMUSG00000072844.7_ENSMUSG00000086695.2	novel	403	2	NA	NA	-25	-1436	multi-exon	FALSE	non_canonical	0	0	junction_2	4.8	15	70	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAATCCAGGCCCATCCA	NA	False	NA	NA	False	NA	NA	NA	168769960	168759474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chrX_-_168760266_168764155_168765249_168766280_168767152_168767934_168768277_168768772_168769081_168769703
98174	chr5	-	3743	26	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	11	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	213.354165649513	2	46	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8187	False	NA	NA	False	NA	NA	NA	100564014	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100509893_100511739_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
98175	chrM	+	493	1	FSM	ENSMUSG00000064353.1	ENSMUST00000082404.1	70	1	-491	68	-491	-68	mono-exon	FALSE	NA	NA	NA	NA	NA	73	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	80	False	NA	138	True	NA	NA	NA	6450	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_6400_6900
98176	chr11	-	2856	1	Intergenic	novelGene_2342	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCTCTTGCAATTTGCAA	NA	False	NA	NA	False	NA	NA	NA	57448511	57445655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445700_57448500
98178	chr6	-	1606	5	FSM	ENSMUSG00000030057.16	ENSMUST00000113619.8	1661	5	58	-3	0	3	multi-exon	FALSE	canonical	3	2802	junction_3	3497.63613030286	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACAGTTTGGACTTTTC	NA	False	NA	NA	False	NA	NA	NA	87828004	87820060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822658_87822776_87827885
98179	chr4	+	4316	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4885	1660	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.333151382607	2	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCCAGGTTCCAGGTG	NA	False	NA	NA	False	NA	NA	NA	147395015	147419851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395130_147409218_147409335_147413438_147413566_147415724_147416721_147416888
98180	chr4	+	2333	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	124.272084638539	2	68	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533648	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533656_147576878_147577009_147592042_147592098_147595209_147595337_147596801_147597174_147597343_147598100_147599020_147599472_147600086
98181	chr11	-	2850	20	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	6127	468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	244.11565761669	1	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATGCAGCACAAGAGACG	NA	False	NA	NA	False	NA	NA	NA	97072580	97052867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053211_97053277_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450
98182	chr11	+	3056	6	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	7031	-13	intron_retention	FALSE	canonical	3	527	junction_2	43.2018518121619	2	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATATGGATGACCAT	NA	False	NA	NA	False	NA	NA	NA	78226271	78233595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78232262_78232559
98183	chr1	-	2189	18	NNC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-38	223	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	135.206211851318	2	10	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTCTCTGGAGACTT	NA	False	NA	NA	False	NA	NA	NA	58544152	58503139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520267_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
98184	chr1	+	408	5	NNC	ENSMUSG00000073702.12	novel	1049	5	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4497.02607286193	39	2	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGGGTTTGGTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	39406993	39410446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_39407016_39407229_39407337_39409094_39409197_39410034_39410148_39410382
98185	chr7	+	1486	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2831.03902466633	1	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495264	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501400_46503487_46503531_46504400
98186	chrX	+	3659	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	-128	-2181	-128	2181	mono-exon	FALSE	NA	NA	NA	NA	NA	32	131	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTTAACCATAATAGCCA	NA	False	NA	NA	False	NA	NA	NA	32942995	32946654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_32943000_32946700
98188	chr7	-	5216	18	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-6	-571	combination_of_known_junctions	FALSE	canonical	3	11	junction_15	19.8412383808176	1	142	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAAATGTTGAACTGTATA	3496	False	NA	NA	False	NA	NA	NA	98305996	98238713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98240092_98242537_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98297011_98297112_98303950_98304060_98305680
98189	chr6	+	3823	24	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	328.19883663796	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	87864919	87890577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881794_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886830_87889213_87889771_87889852
98190	chr12	-	2144	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	59	-1249	-16	1249	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	1126	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCAGCTTCATCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	28685893	28679603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
98191	chr1	-	4128	10	NNC	ENSMUSG00000026556.16	novel	6528	9	NA	NA	-5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.0846056571511	4	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGGGGTTTTCTGTTGCT	NA	False	NA	NA	False	NA	NA	NA	171854867	171828527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_171828790_171830165_171831337_171831534_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
98192	chr7	+	8079	35	NNC	ENSMUSG00000108738.2	novel	1889	2	NA	NA	1355	104755	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTCAGCCGGCCGCTGA	NA	False	NA	NA	False	NA	NA	NA	115936593	116042623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_115939459_115941386_115941508_115941591_115941704_115942042_115942119_115942209_115942328_115945353_115945479_115947354_115947567_115949271_115949380_115950010_115950167_115951034_115951205_115953214_115953349_115955468_115955598_115957868_115957964_115959230_115959334_115961279_115961462_115961791_115961892_115962587_115962678_115963662_115963852_115967278_115967423_115967979_115968092_115972027_115972200_115972964_115973086_115975457_115975668_115975747_115975797_115977856_115977999_115987078_115987143_115987276_115987356_115989677_115989791_115990507_115990629_115993435_115993594_116005094_116005201_116016689_116017815_116020023_116020129_116041825_116041914_116042538
98193	chr7	-	3064	16	NNC	ENSMUSG00000036915.18	novel	3352	15	NA	NA	-3725	-39	intron_retention	FALSE	canonical	1	2	junction_15	12.2027319345574	1	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAGTGAAGGGTCTTGGA	8893	False	NA	NA	False	NA	NA	NA	30160840	30147534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_30147880_30149261_30149328_30149802_30149904_30150226_30150326_30152105_30152326_30152478_30152580_30152836_30152970_30153060_30153189_30153438_30153588_30153662_30153769_30153933_30154085_30154596_30154758_30154889_30155040_30155844_30155995_30156222_30156405_30160018
98194	chr5	+	5193	2	NNC	ENSMUSG00000037905.14	novel	6473	3	NA	NA	13659	509	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	194	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTATCTGTATGTG	9	False	NA	NA	False	NA	NA	NA	125532472	125537943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_125534235_125534512
98195	chr9	-	2628	14	NNC	ENSMUSG00000042790.17	novel	3964	14	NA	NA	3	189	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	16.1556775518628	1	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCCCCCAAAGGTTAAGG	9593	False	NA	NA	False	NA	NA	NA	45817702	45775398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779143_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
98196	chr7	+	4457	9	NIC	ENSMUSG00000030802.15	novel	3405	12	NA	NA	-6	6	intron_retention	FALSE	canonical	3	550	junction_7	38.4740172064213	6	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTTCTCTCTTATTT	NA	False	NA	NA	False	NA	NA	NA	127503268	127509399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127506520_127506613_127506704_127507092
98197	chr17	-	2435	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-3	intron_retention	TRUE	canonical	0	0	junction_6	3150.19722588657	33	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884199	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881370_45881453_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
98198	chr2	+	994	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11227	216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11413807	11426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414193_11425638
98199	chr5	-	1410	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	-1	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	104.937406938613	201	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGGATATTTGTTTTC	5305	False	NA	NA	False	NA	NA	NA	143314975	143302252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311087_143311179_143311853_143311979_143314145_143314326_143314920
98200	chr12	+	2027	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	47	119	47	-119	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	2	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGCCTTTGTACCTTT	NA	False	NA	NA	False	NA	NA	NA	24758286	24764026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
98201	chr1	+	8346	4	Antisense	novelGene_ENSMUSG00000026193.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	170	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCCTTCCAATTCAAACT	9184	False	NA	NA	False	NA	NA	NA	71624693	71637298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_71625445_71625990_71626100_71629250_71629364_71629925
98203	chr5	+	2197	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	36	34	36	-34	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	333	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTCCTTCTGTTAGTT	NA	False	NA	NA	False	NA	NA	NA	45650751	45669999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
98204	chr2	-	2886	20	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	2	-3	intron_retention	FALSE	non_canonical	0	0	junction_8	132.927051829314	2	65	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACTAGTGTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	120234574	120185799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202103_120204389_120204461_120205899_120205994_120208369_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
98205	chr6	+	1077	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-96	-516	-96	516	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCAATAAAAGTTCTCGG	NA	False	NA	NA	False	NA	NA	NA	37782924	37784001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
98206	chr12	+	2202	1	Intergenic	novelGene_4296	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGCCCGCCAGTTTACT	NA	False	NA	NA	False	NA	NA	NA	17512459	17514661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_17512500_17514700
98207	chr5	-	1172	3	Intergenic	novelGene_666	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	23575266	23570198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_23570978_23573030_23573202_23575044
98208	chr13	-	2669	16	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-52	1392	at_least_one_novel_splicesite	FALSE	canonical	3	76	junction_15	265.584336887551	4	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTCCCGGCTGTTGCATG	NA	False	NA	NA	False	NA	NA	NA	6686738	6646938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6686596
98209	chr14	-	3920	8	NIC	ENSMUSG00000000197.9	novel	3862	31	NA	NA	36039	28356	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	0.534522483824849	5	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAAAGAGATGCCCATG	NA	False	NA	NA	False	NA	NA	NA	123828249	123694710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_123697841_123702075_123702244_123723797_123723930_123744892_123744980_123752712_123752818_123753042_123753186_123809386_123809507_123828214
98210	chr8	+	6649	39	NNC	ENSMUSG00000031592.11	novel	6484	39	NA	NA	-12	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_37	50.6172974715571	1	120	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATGCTTTTGGGAAATGT	NA	False	NA	NA	False	NA	NA	NA	41692776	41785380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712172_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494_41746854_41757023_41757189_41762556_41762730_41763045_41763178_41765194_41765316_41766338_41766498_41766881_41767019_41768956_41769092_41774890_41775089_41777991_41778055_41778300_41778437_41778863_41779025_41780563_41780637_41781805_41782063_41783669_41783763_41783867_41783958_41785019
98211	chr14	+	1095	3	ISM	ENSMUSG00000021846.10	ENSMUST00000228519.2	1629	5	65541	61	51831	-61	3prime_fragment	FALSE	canonical	3	56	junction_1	8	1	66	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAGCATCAGCATCGTC	NA	False	NA	NA	False	NA	NA	NA	48488003	48494220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_48488162_48490033_48490223_48493472
98212	chr8	+	7890	19	ISM	ENSMUSG00000070047.15	ENSMUST00000189017.8	14651	27	74535	0	-19498	0	3prime_fragment	FALSE	canonical	3	28	junction_2	12.6130688641916	80	73	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGCTTTAATGCCTGGT	NA	False	NA	NA	False	NA	NA	NA	45477779	45505282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_45479909_45480520_45480718_45482492_45482647_45483148_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45502878_45502915_45503817
98213	chr2	-	3291	4	NNC	ENSMUSG00000078867.10	novel	1077	4	NA	NA	-161190	2366	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.6551707048646	27	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTATATATCTTGGGGAT	NA	False	NA	NA	False	NA	NA	NA	177251303	177076550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177079501_177079668_177079803_177081219_177081347_177251223
98214	chr16	+	1673	7	NIC	ENSMUSG00000055692.22	novel	1631	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	122	junction_3	59.576281633997	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGTGTGTGGGGTTTCAT	NA	False	NA	NA	False	NA	NA	NA	17094206	17096524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_17094333_17094497_17094622_17094700_17094904_17095057_17095115_17095205_17095457_17095532_17095756_17095835
98215	chrM	-	1123	1	Antisense	novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	33	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGTAACCAGCTATCACCAA	9938	False	NA	NA	False	NA	NA	NA	2576	1453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_2600
98216	chr17	+	4426	13	NNC	ENSMUSG00000096255.3	novel	771	5	NA	NA	62	9827	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3395.1719918388	170	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCTACTGAGGACAAAGG	NA	False	NA	NA	False	NA	NA	NA	6697572	6713522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295_6706263_6707946_6708123_6708456_6708880_6709603_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713272_6713364
98217	chr12	+	2693	3	ISM	ENSMUSG00000079179.10	ENSMUST00000177896.8	2872	7	-22	11635	0	469	5prime_fragment	FALSE	canonical	3	138	junction_2	36.5	12	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCACAACCCCAAGGTGA	NA	False	NA	NA	False	NA	NA	NA	3285503	3288742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_3287413_3287590_3287661_3288028
98218	chr4	+	718	1	Intergenic	novelGene_1960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAACTCTCCTGCGTGTGT	5019	False	NA	NA	False	NA	NA	NA	128813401	128814119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_128813400_128814100
98219	chr16	-	4994	26	NNC	ENSMUSG00000060657.9	novel	7751	27	NA	NA	43	-5075	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	12.6690804717627	2	121	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCCTGTCATCCTGAAGC	9859	False	NA	NA	False	NA	NA	NA	13977088	13932111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_13932218_13933588_13933706_13933853_13933915_13935146_13935360_13938087_13938319_13943805_13944030_13944919_13945118_13946374_13946509_13946614_13946758_13947509_13947731_13949310_13949487_13950223_13950344_13950433_13950671_13954801_13954883_13956206_13956386_13958046_13958234_13959544_13959666_13959751_13959910_13960095_13960522_13963780_13963954_13964587_13964706_13966879_13967107_13969005_13969181_13969889_13970577_13971695_13971896_13977007
98220	chr13	-	2998	5	Genic_Genomic	ENSMUSG00000091347.3	novel	255	1	NA	NA	-16545	2076	multi-exon	FALSE	canonical	0	0	junction_1	42.4403993854912	59	106	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACAGTTGCCTTGGTCA	9942	False	NA	NA	False	NA	NA	NA	66391932	66373056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66375086_66375335_66375998_66384209_66384271_66384471_66384599_66391813
98222	chr18	-	3665	12	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	2	0	intron_retention	FALSE	canonical	3	155	junction_11	19.0015223400566	7	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2803	False	NA	NA	False	NA	NA	NA	34884575	34866045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
98223	chr15	-	1691	5	NNC	ENSMUSG00000022285.18	novel	2285	6	NA	NA	1490	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1801.46251348731	1	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTTCAACTACTTTTCT	3353	False	NA	NA	False	NA	NA	NA	36791168	36771949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790933
98224	chr10	+	2565	9	FSM	ENSMUSG00000034889.9	ENSMUST00000050867.8	2715	9	150	0	150	0	multi-exon	FALSE	canonical	3	160	junction_2	15.2786615905975	67	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTGATCTGAGTCA	5619	False	NA	NA	False	NA	NA	NA	81157086	81162076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81157281_81158271_81158840_81158954_81159101_81159452_81159616_81159743_81159859_81160136_81160330_81160702_81160823_81160923_81161211_81161297
98225	chr14	-	1448	7	NNC	ENSMUSG00000007589.10	novel	2956	9	NA	NA	-7	1104	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	168.870183540165	2	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTAGGTCATTCCTCCG	NA	False	NA	NA	False	NA	NA	NA	55919209	55916559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55916867_55916970_55917161_55917606_55917767_55917913_55918165_55918456_55918547_55918681_55918769_55918846
98226	chr13	-	2595	3	FSM	ENSMUSG00000072066.8	ENSMUST00000201563.4	2640	3	45	0	43	0	multi-exon	FALSE	canonical	3	9	junction_2	2	7	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGGCTAATATCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	62771951	62750826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_62753195_62755186_62755314_62771851
98227	chr9	+	1078	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-16	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6734.01236489897	128	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080640	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082227_64083405_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
98228	chrUn_JH584304v1	-	3940	7	Intergenic	novelGene_4604	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_6	343.545565472115	4	92	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAATCTTCTGTCTTCCC	NA	False	NA	NA	False	NA	NA	NA	60554	52189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53833_54318_54480_54720_54868_55111_55702_56985_57152_58563_58830_59587
98229	chr12	-	1692	6	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7554	junction_4	349.50616589697	317	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111638408_111638663
98230	chr7	-	1819	7	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-13	-5	intron_retention	FALSE	canonical	3	19619	junction_6	490.317924072399	129	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGAGTCTGTTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
98231	chr13	+	2476	4	NNC	ENSMUSG00000114426.2	novel	1561	3	NA	NA	-8986	712	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	39.8357739838062	94	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAGGAACCTTGACTTAG	5559	False	NA	NA	False	NA	NA	NA	66711998	66724687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66712112_66720982_66721110_66721308_66721370_66722512
98232	chr10	-	2436	17	NIC	ENSMUSG00000020074.8	novel	3862	25	NA	NA	1	-31	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	117.288090161576	2	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGACAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	62628048	62588984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62626699_62626822_62627994
98233	chrX	+	3458	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	110	476	15	-476	multi-exon	FALSE	canonical	3	1167	junction_1	494.469940036804	143	43	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20524674	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
98234	chr4	+	4123	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000056300.15	novel	314	3	NA	NA	-16	182150	multi-exon	TRUE	non_canonical	0	0	junction_3	152.718728386534	1	106	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146206925	146806002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146209452_146209546_146508052_146508143_146597241_146597335_146613823_146613960_146797295_146797381_146800390_146800518_146802050_146802614_146802693_146803682_146803847_146804170_146804673
98235	chr4	+	2491	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	13	0	multi-exon	FALSE	non_canonical	0	0	junction_1	44.300919048835	9	55	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216507	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147447267_147447362_147536170_147536240_147665698_147665826_147667290_147667444_147667799_147668493_147668576
98236	chr10	-	5421	10	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	479	1383	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	71.8982477164177	11	157	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTTCCCCAAACAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	62700604	62647017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654719_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62673954_62676158_62700586
98237	chr7	+	3703	27	NIC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	53	1	intron_retention	FALSE	canonical	0	0	junction_1	272.840832395896	80	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2682	False	NA	-55	True	NA	NA	NA	13012813	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
98238	chr2	-	3627	6	NIC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	16	-17	combination_of_known_splicesites	FALSE	canonical	2	5	junction_5	180.60276852806	2	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTTATGTAACAAGGATAT	NA	False	NA	NA	False	NA	NA	NA	121337130	121322408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121336943
98239	chr17	-	1974	9	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	3662.27464963716	402	8	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884192	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881626_45882746_45882838_45884092
98241	chr15	-	2379	15	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGTCCTGGGTGGTACGA	NA	False	NA	NA	False	NA	NA	NA	12883313	12833944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12834746_12837365_12837460_12842140_12842254_12842385_12842617_12846152_12846293_12848135_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865183_12866646_12866729_12867679_12867753_12878738_12878913_12881707_12881834_12883251
98242	chr17	-	1909	2	NIC	ENSMUSG00000117231.2	novel	3157	3	NA	NA	-3	-1052	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	0	17	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCAACTTGACACAAGCT	NA	False	NA	NA	False	NA	NA	NA	71112995	71106672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_71108460_71112873
98243	chr11	-	1345	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
98244	chrX	-	6019	30	FSM	ENSMUSG00000062949.14	ENSMUST00000101527.3	6044	30	11	14	11	-14	multi-exon	FALSE	canonical	3	63	junction_14	11.609582331096	84	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTTTGGTATGATACAA	NA	False	NA	NA	False	NA	NA	NA	59449161	59268666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_59271154_59274507_59274613_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995
98245	chr4	-	2513	7	Intergenic	novelGene_2139	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	43	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTGCAAACACTAGGCAC	NA	False	NA	NA	False	NA	NA	NA	147669650	147390157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147390243_147534447_147534573_147578831_147578926_147637751_147637877_147639756_147639810_147665696_147665858_147667780
98246	chr11	-	3300	2	Intergenic	novelGene_2340	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	81	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTTGCAACAAGACCGT	NA	False	NA	NA	False	NA	NA	NA	57450923	57445646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57448701_57450677
98247	chr15	+	1246	11	ISM	ENSMUSG00000056851.15	ENSMUST00000078404.15	3222	14	1896	1195	17	-15	3prime_fragment	FALSE	canonical	3	231	junction_3	121.524318553942	26	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATTAAAAGATGGACT	6103	False	NA	NA	False	NA	NA	NA	102383067	102407301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
98248	chr2	+	4319	6	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	-203766	57459	intron_retention	FALSE	non_canonical	0	0	junction_1	97.9991836700694	1093	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTGGTTAGATGGCTCAG	NA	False	NA	NA	False	NA	NA	NA	176986241	177259015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176986332_177190055_177190111_177198701_177198829_177199035_177199097_177200246_177202745_177257527
98249	chr4	+	2951	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	-9	11	-9	-8	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	6	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	146599367	146623841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
98251	chr9	-	340	1	Antisense	novelGene_ENSMUSG00000035202.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTCTGCTCCACGGGAGG	NA	False	NA	NA	False	NA	NA	NA	123291252	123290912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_123290900_123291300
98252	chr2	-	2082	7	NNC	ENSMUSG00000037773.15	novel	3496	7	NA	NA	-20	3	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	11.6045967903528	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGACATTCCTGTGTCGG	8005	False	NA	NA	False	NA	NA	NA	130266250	130260886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_130261254_130261549_130261629_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331
98254	chr7	-	3547	6	FSM	ENSMUSG00000025722.17	ENSMUST00000135905.8	3080	6	70	-537	55	0	multi-exon	FALSE	canonical	3	120	junction_3	8.49941174435031	27	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTGTGTGTATGAG	NA	False	NA	NA	False	NA	NA	NA	80550912	80540471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
98255	chr17	+	1796	2	Intergenic	novelGene_215	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGCGTCCCGGCCCCGCGG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154395_40154669
98256	chrX	-	2104	17	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-3929	0	intron_retention	FALSE	non_canonical	0	0	junction_11	654.889208187156	35	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72834432	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824819_72825282_72825396_72825611_72825710_72826280_72826323_72830380_72830538_72830805_72830911_72832438_72832555_72833400_72833478_72833633_72833725_72833962_72834029_72834257
98257	chr1	-	981	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	64	3449	64	3216	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTAAATGCACAACTTTG	NA	False	NA	NA	False	NA	NA	NA	13730706	13697002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
98259	chr9	+	4145	18	Intergenic	novelGene_1025	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	45	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCAGCAAGGCAACCGGA	NA	False	NA	NA	False	NA	NA	NA	44843420	44876847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_44844777_44846624_44846800_44848930_44849047_44849148_44849254_44851265_44851447_44852451_44852585_44853863_44854167_44856100_44856222_44857479_44857818_44859325_44859511_44860073_44860283_44861030_44861191_44862078_44862231_44863286_44863403_44864240_44864414_44871276_44871438_44874634_44874727_44876778
98260	chr9	+	676	2	NNC	ENSMUSG00000111082.2	novel	815	2	NA	NA	835	330	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	0	18	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AACAAAACAAAAAAAAACCT	NA	False	NA	NA	False	NA	NA	NA	44832331	44833117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_44832416_44832525
98261	chr8	-	4244	16	NNC	ENSMUSG00000001995.10	novel	6365	21	NA	NA	17714	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	74.9264528276452	1	114	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCAGTGTTGCCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	126201735	126144807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_126146031_126148619_126148702_126149317_126149442_126166002_126166223_126169321_126169476_126171224_126171450_126174245_126174632_126176619_126176724_126177071_126177173_126178657_126178742_126180039_126180294_126190890_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562
98262	chr12	-	1584	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	23	-37	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	74.8416510191533	35	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGTTTCCGTTTAATATA	7695	False	NA	NA	False	NA	NA	NA	110807338	110774268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
98263	chr12	-	5264	15	NNC	ENSMUSG00000020949.10	novel	1233	6	NA	NA	15	18996	intron_retention	FALSE	non_canonical	0	0	junction_1	4966.03904905456	35	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTCTGTTTTGTTATTA	NA	False	NA	NA	False	NA	NA	NA	65120721	65090201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_65090898_65094885_65095053_65100057_65100223_65100741_65100853_65101927_65102538_65103023_65103294_65104530_65104688_65106644_65106717_65107922_65108037_65108194_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
98264	chr15	-	649	6	ISM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	72	1651	-7	227	5prime_fragment	FALSE	canonical	3	225	junction_5	94.283402569063	1	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGAGTGCAGCCATCCG	8912	False	NA	NA	False	NA	NA	NA	75801609	75798175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
98265	chr8	-	7541	20	NNC	ENSMUSG00000031821.12	novel	3900	5	NA	NA	-64	42860	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	453.678214638606	3052	29	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGAGGGGGGAGGGGGGAC	NA	False	NA	NA	False	NA	NA	NA	121315837	121262511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_121262691_121280319_121280540_121289362_121289562_121293103_121293278_121293663_121293862_121294499_121294692_121294897_121295221_121295788_121296114_121297453_121298081_121299043_121299154_121299372_121299644_121300907_121301017_121301671_121302043_121303012_121303292_121304707_121304813_121305206_121308551_121308820_121308948_121312831_121312932_121315463_121315579_121315664
98266	chr7	+	6166	1	Intergenic	novelGene_2882	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	97	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCACATTTCTTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	13848630	13854796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_13848600_13854800
98267	chr13	+	3918	8	FSM	ENSMUSG00000021696.10	ENSMUST00000225550.2	2351	8	37	-1604	37	-6	multi-exon	FALSE	canonical	3	9	junction_3	34.299997025049	3	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATAATTTTGTCATGT	NA	False	NA	NA	False	NA	NA	NA	108350980	108422211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_108351035_108393200_108393333_108403723_108403869_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
98268	chr5	-	5770	7	NNC	ENSMUSG00000015653.14	novel	10408	6	NA	NA	4	1564	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.9761701954911	42	117	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTAACCTGAGATCCATA	4822	False	NA	NA	False	NA	NA	NA	5744529	5719373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5720023_5720066_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5744379
98269	chr2	-	4529	25	NNC	ENSMUSG00000027194.17	novel	4590	25	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_22	55.0037246213583	2	117	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTGGTGTAGTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	94237019	94131110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94132213_94133889_94134034_94135288_94135409_94153433_94153518_94154706_94154867_94157042_94157164_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208404_94209033_94209204_94216436_94216527_94236851
98270	chr17	-	5282	18	FSM	ENSMUSG00000024043.14	ENSMUST00000024840.12	5322	18	16	24	16	-24	multi-exon	FALSE	canonical	3	21	junction_17	5.76530609120275	44	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAAAAGTAATATGACA	NA	False	NA	NA	False	NA	NA	NA	68311099	68149731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_68152813_68156047_68156113_68159905_68160031_68162428_68162486_68164410_68164525_68165148_68165347_68168267_68168351_68171457_68171621_68175945_68176024_68178683_68178776_68178877_68179044_68180017_68180161_68182568_68182654_68188430_68188521_68191713_68191804_68203043_68203262_68208276_68208501_68310889
98271	chr13	-	3900	10	NNC	ENSMUSG00000074830.5	novel	1562	3	NA	NA	-7506	267803	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	82.7424980747761	1	55	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTGAAGTAAGGATCATT	NA	False	NA	NA	False	NA	NA	NA	66828899	66550188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66551223_66590512_66592702_66596347_66596390_66757351_66757430_66757625_66757702_66758251_66758312_66794178_66794282_66821007_66821069_66821267_66821395_66828769
98272	chr11	-	4678	12	NNC	ENSMUSG00000040548.17	novel	4934	12	NA	NA	-6	36	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	46.6924171379231	1	139	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATTATTTGACCATTCC	3325	False	NA	NA	False	NA	NA	NA	106503762	106393182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106394545_106397692_106397814_106402727_106402938_106404412_106404539_106410759_106410841_106420087_106420188_106424696_106424844_106434997_106435246_106437489_106437830_106439539_106439741_106457790_106459454_106503683
98274	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
98275	chr17	+	3206	17	NNC	ENSMUSG00000090936.3	novel	1555	2	NA	NA	-8384	-1873	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	60	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTAGTTAGTCGAGGGCGG	NA	False	NA	NA	False	NA	NA	NA	35375710	35384289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35376184_35376322_35376536_35376857_35377014_35377064_35377155_35377367_35377560_35377911_35378389_35378754_35378969_35379073_35379169_35379430_35379571_35379728_35379809_35380003_35380158_35380310_35380451_35380614_35380688_35380781_35380886_35381177_35381359_35381850_35382037_35384051
98276	chr4	-	912	1	Intergenic	novelGene_2121	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTAAAAAAATGACATCAT	NA	False	NA	NA	False	NA	NA	NA	146834894	146833982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146834000_146834900
98277	chr10	-	3767	13	NNC	ENSMUSG00000035835.15	novel	3063	9	NA	NA	2846	5199	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGGAGGCCTCCTCCGG	NA	False	NA	NA	False	NA	NA	NA	79700269	79691109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79692367_79694583_79694656_79694782_79695105_79695183_79695354_79695432_79695544_79695612_79695789_79696656_79696802_79697845_79697881_79698281_79698375_79698485_79698704_79698811_79698890_79698978_79699652_79699852
98278	chrM	+	2584	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1002	0	1002	mono-exon	FALSE	NA	NA	NA	NA	NA	126	75	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACAGCGGGAGTACCACC	-3	True	NA	22	True	NA	NA	NA	1093	3677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
98279	chr16	+	1635	8	FSM	ENSMUSG00000039903.19	ENSMUST00000037539.15	2142	8	300	207	46	-17	multi-exon	FALSE	canonical	2	6	junction_2	3.62530786869986	31	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTGGTGTCTTGCAATCC	NA	False	NA	NA	False	NA	NA	NA	90628046	90701566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_90628321_90663142_90663340_90666453_90666578_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
98280	chr5	-	3321	14	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	0	-3	intron_retention	FALSE	canonical	3	170	junction_13	149.706616440013	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTTGTGAGCCTCCCGC	1952	False	NA	NA	False	NA	NA	NA	138185488	138176884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138177410_138177674_138177873_138178041_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185345
98281	chr4	+	5226	8	NNC	ENSMUSG00000039662.17	novel	4950	6	NA	NA	-2099	6432	intron_retention	TRUE	non_canonical	0	0	junction_1	0	72	13	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTAGAAGTGCCAACCCT	NA	False	NA	NA	False	NA	NA	NA	152387744	152398010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_152392073_152393293_152393365_152395845_152395961_152396230_152396281_152396527_152396716_152396847_152397032_152397641_152397742_152397820
98282	chr9	+	1142	7	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-4	134	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2619.12888932349	4	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGTAACACAATGTTTAG	NA	False	NA	NA	False	NA	NA	NA	119956850	119960759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956890_119957522_119957689_119958223_119958337_119959181_119959421_119959837_119959963_119960065_119960232_119960465
98283	chrX	+	3139	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	78	-9	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_8	211.746534898029	1	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGGCAGTTGGTGAGAG	NA	False	NA	NA	False	NA	NA	NA	158315792	158376068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158350914_158351011_158357940_158358094_158374327_158374354_158375066
98284	chr5	-	5502	7	NNC	ENSMUSG00000015653.14	novel	10408	6	NA	NA	2	1294	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.9761701954911	45	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACCCACAGTGTAAGGCAC	4820	False	NA	NA	False	NA	NA	NA	5744531	5719643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_5720023_5720066_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5744379
98285	chr1	+	7162	30	NIC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	27	-7	intron_retention	FALSE	canonical	3	44	junction_6	568.584792158531	24	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATCTATTTGGTTCA	NA	False	NA	NA	False	NA	NA	NA	185095281	185160550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
98286	chr15	+	1535	12	ISM	ENSMUSG00000022394.15	ENSMUST00000174229.8	2578	18	1	4350	1	105	5prime_fragment	FALSE	canonical	3	640	junction_8	43.8040339287348	7802	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAAAAGAATGACATTGAGC	NA	False	NA	NA	False	NA	NA	NA	81548135	81568156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043
98287	chr16	+	564	1	Intergenic	novelGene_3790	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
98288	chr3	-	7870	13	FSM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	82	17	38	-17	multi-exon	FALSE	canonical	3	127	junction_4	6.86122357082823	82	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATGTTCTTTAAGTGAA	NA	False	NA	NA	False	NA	NA	NA	100592737	100469540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334_100563591_100591876
98289	chr19	-	2089	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	76	452	-53	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	34	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902347	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
98290	chrM	-	1458	1	Antisense	novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTATAGCTCCTAGATGT	10002	False	NA	16	True	NA	NA	NA	2665	1207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1200_2700
98291	chr1	+	1380	4	NIC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-5	-19	intron_retention	FALSE	canonical	3	19621	junction_2	1900.58680996744	6	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACAATGGTGTCTCAAAG	NA	False	NA	NA	False	NA	NA	NA	86454442	86458415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_86454673_86456894_86456967_86457177_86457527_86457686
98292	chr11	-	5243	2	Intergenic	novelGene_2309	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	160	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450922	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450429_57450475
98293	chr14	+	4558	3	FSM	ENSMUSG00000046204.15	ENSMUST00000089236.11	5518	3	-10	970	-10	-970	multi-exon	FALSE	canonical	3	15	junction_1	6.5	55	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATCGTGAGTTGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	67148608	67157502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_67148743_67152770_67152900_67153207
98294	chr5	+	2166	1	Intergenic	novelGene_892	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTACTTGTTTTGGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	145197043	145199209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_145197000_145199200
98295	chr13	+	927	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-10	21	-10	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7952	False	NA	NA	False	NA	NA	NA	74554517	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
98296	chr11	-	1574	4	NNC	ENSMUSG00000016559.15	novel	1993	4	NA	NA	42	-330	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6568.55059270224	2	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915257	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914362_115914450_115914605_115914712_115914835_115915204
98297	chr13	+	2683	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	0	516	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	113.706859951368	43	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCTTGTGTGTGGACCAG	NA	False	NA	NA	False	NA	NA	NA	62277715	62321749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62320740_62321157
98298	chr5	+	387	1	Intergenic	novelGene_940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1043	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
98299	chr4	-	828	4	ISM	ENSMUSG00000028639.15	ENSMUST00000079644.13	1628	8	12361	6	-57	3	3prime_fragment	FALSE	canonical	3	9851	junction_2	447.097304845377	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAATGTCTAGTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	119139440	119135183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_119135565_119136130_119136397_119138766_119138850_119139342
98300	chr14	+	7710	14	NNC	ENSMUSG00000040717.7	novel	8280	13	NA	NA	-51	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	7.0333104311769	44	74	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTGCAGTGGCTCCTTA	NA	False	NA	NA	False	NA	NA	NA	26760984	26829241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26761187_26798307_26798366_26804611_26804738_26809355_26809475_26809962_26810084_26813745_26813791_26813885_26814038_26815353_26815420_26816134_26816190_26816732_26816844_26817880_26818045_26821439_26822383_26823233_26826790_26827249
98301	chrM	+	595	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	365	-3	365	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-2	True	NA	NA	False	NA	NA	NA	3115	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3100_3700
98302	chrX	-	4000	17	NNC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	-1	-2621	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	86.1421200328272	9	26	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTATCATGGTTGCTGGG	NA	False	NA	NA	False	NA	NA	NA	73009958	72993421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72994308_72994848_72995070_72995259_72995399_72995531_72995593_72995787_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998187_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000992_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
98303	chrX	+	2205	5	Antisense	novelGene_ENSMUSG00000015290.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5469	37	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAACCGCCCGCCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	73409349	73412138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_73410420_73410489_73411192_73411305_73411516_73411758_73411863_73412019
98304	chrX	+	5111	2	Intergenic	novelGene_3942	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	42	93	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGACCGTTTTCTCGTT	NA	False	NA	NA	False	NA	NA	NA	63977041	63982199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63977469_63977515
98306	chrM	+	2340	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	802	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2718_2994
98307	chr1	-	2842	18	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	32	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	627.217477997769	82	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGACTTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20890452	20873237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873664_20873722_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
98308	chr6	+	2267	19	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-65	5	at_least_one_novel_splicesite	FALSE	canonical	2	36	junction_17	71.4344212772098	6	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTCATATTCTTTGCAAT	108	False	NA	NA	False	NA	NA	NA	49372472	49446440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49442402_49442472_49446061
98309	chr3	+	5372	11	NNC	ENSMUSG00000038495.15	novel	8043	12	NA	NA	-14231	-2239	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	15.3443800787129	62	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAATAAAAAAGTTCC	NA	False	NA	NA	False	NA	NA	NA	96043789	96066207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96043936_96047727_96047917_96048932_96049027_96051551_96051654_96052278_96052407_96058178_96058292_96058654_96058783_96059211_96059362_96059829_96059945_96060724_96060810_96062085
98310	chr11	-	1703	4	ISM	ENSMUSG00000062825.16	ENSMUST00000106215.11	1827	5	218	-1	218	0	3prime_fragment	FALSE	canonical	3	6267	junction_3	216.839930722078	3	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	120238699	120236515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461
98311	chr15	-	3144	1	NIC	ENSMUSG00000055762.17	novel	2312	8	NA	NA	-1893	0	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	18	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	NA	False	NA	NA	NA	75770482	75767338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75767300_75770500
98312	chr11	+	477	1	Intergenic	novelGene_2506	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCGGATGCCTGCATGAG	NA	False	NA	NA	False	NA	NA	NA	108902471	108902948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902500_108902900
98313	chr2	-	2945	11	Fusion	ENSMUSG00000103009.2_ENSMUSG00000087528.2	novel	3362	9	NA	NA	-12089	-1544	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	149	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCCGCCGGCTCCTATT	2610	False	NA	NA	False	NA	NA	NA	129053203	129040715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_129040912_129041367_129041965_129042088_129042243_129042418_129042504_129045976_129046076_129048286_129048407_129049529_129049796_129049899_129050456_129050956_129051142_129051789_129051877_129052603
98314	chr12	-	2279	5	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7554	junction_3	376.016206432648	56	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111637479_111637648_111638408_111638663
98315	chr8	-	525	4	ISM	ENSMUSG00000045128.10	ENSMUST00000212709.2	700	5	993	-2	993	-2	3prime_fragment	FALSE	canonical	3	19470	junction_3	6697.45953494474	24	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGCTTGTTTGCTTCTA	NA	False	NA	NA	False	NA	NA	NA	71348934	71348024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776
98316	chr11	-	2721	5	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	-2812	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	10354.191542559	14	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	-156	True	NA	NA	NA	33110089	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33108883_33109742
98317	chr16	+	3263	16	Antisense	novelGene_ENSMUSG00000022673.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	25	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGCAGGGTGAAGCGATTC	NA	False	NA	NA	False	NA	NA	NA	15441966	15455189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_15442633_15443424_15443559_15443898_15444128_15445511_15445718_15446453_15446584_15447164_15447531_15448123_15448384_15449561_15449684_15449980_15450202_15452302_15452444_15452914_15453011_15453095_15453190_15453856_15453960_15454050_15454213_15454480_15454652_15455027
98319	chr11	-	1742	7	NNC	ENSMUSG00000062825.16	novel	1189	7	NA	NA	-3	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2433.92299362344	13	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGCAGTAACTGACCAT	NA	False	NA	NA	False	NA	NA	NA	120239318	120236531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236860_120237003_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
98321	chr5	-	2464	16	NNC	ENSMUSG00000019295.9	novel	2828	4	NA	NA	-13782	-2538	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	88	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGTGCCCTTCGGGTCAAC	NA	False	NA	NA	False	NA	NA	NA	33829542	33815439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_33816069_33818562_33818728_33818861_33818989_33821164_33821245_33821608_33821662_33821877_33822198_33824034_33824086_33824401_33824510_33825304_33825396_33825475_33825579_33826004_33826082_33826160_33826205_33826820_33826990_33828745_33828855_33829008_33829128_33829323
98323	chr9	-	2470	10	NIC	ENSMUSG00000032423.13	novel	2944	11	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	2	14	junction_6	288.615768329444	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTTACAATTCGTTTT	NA	False	NA	NA	False	NA	NA	NA	88364248	88337630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88361623_88361732_88361846_88361966_88362658_88362819_88364108
98324	chr2	+	3412	18	NIC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	-20	18	intron_retention	FALSE	canonical	3	666	junction_10	63.5984918538951	35	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAGAACAGCAGACCTT	NA	False	NA	NA	False	NA	NA	NA	166857209	166876841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875653_166875775_166875955_166876044_166876392
98325	chr8	-	1972	13	NNC	ENSMUSG00000037260.9	novel	2694	18	NA	NA	7364	-41	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	33.3537437512226	28	22	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGGAAGAAAGCTGAAATA	NA	False	NA	NA	False	NA	NA	NA	26454892	26434521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_26435344_26436263_26436377_26436474_26436546_26437969_26438040_26441996_26442084_26443308_26443436_26444633_26444756_26445701_26445818_26447217_26447379_26449610_26449642_26450853_26450931_26453382_26453487_26454821
98326	chr3	+	4334	17	NIC	ENSMUSG00000027710.15	novel	3930	18	NA	NA	33	-2	intron_retention	FALSE	canonical	3	170	junction_2	13.6376088446619	262	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATTCCTTTTTACCAAG	NA	False	NA	NA	False	NA	NA	NA	36120160	36147000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143610_36144230_36144304_36144979
98327	chrM	-	1389	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1315	-5	1315	mono-exon	FALSE	NA	NA	NA	NA	NA	14	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATTATTATTGGTATTAC	9245	False	NA	NA	False	NA	NA	NA	6943	5554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5600_6900
98328	chr2	-	2689	6	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	5	1737	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	426.04131255079	94	59	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	2342	False	NA	NA	False	NA	NA	NA	177269998	177259259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177260251_177260707_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
98329	chr16	+	1170	2	NNC	ENSMUSG00000037991.10	novel	3742	2	NA	NA	4762	-981	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	96	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTTAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10657693	10660121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_10658633_10659890
98330	chr12	+	2693	4	Genic_Genomic	ENSMUSG00000113402.2	novel	324	1	NA	NA	-221	18729	multi-exon	FALSE	canonical	3	19	junction_2	10.0332779621949	1	69	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCACAATTGTCTCCAGTA	NA	False	NA	NA	False	NA	NA	NA	18437534	18456808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_18437954_18452998_18453126_18453327_18453389_18454722
98331	chr16	+	2134	10	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	-1	0	intron_retention	FALSE	canonical	3	441	junction_1	525.957539477602	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6052	False	NA	NA	False	NA	NA	NA	22926506	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
98332	chr11	+	7019	9	NNC	ENSMUSG00000003119.15	novel	2605	8	NA	NA	7459	1970	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.5894559525711	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACCACTTTTGCTGCATT	NA	False	NA	NA	False	NA	NA	NA	98118685	98144360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_98119168_98119377_98120996_98121809_98121912_98127530_98127609_98131604_98131722_98132523_98132656_98134186_98134399_98136042_98136496_98140535
98333	chr14	-	4423	13	Antisense	novelGene_ENSMUSG00000021767.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCACGTCTTGCACTCGAT	NA	False	NA	NA	False	NA	NA	NA	21720822	21669046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21669074_21669283_21669366_21672020_21672156_21674900_21675828_21676784_21676908_21678878_21679010_21681394_21681530_21684541_21684704_21687612_21687709_21710810_21711041_21711493_21711654_21712220_21712410_21718796
98334	chrM	-	817	2	Antisense	novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	22	True	NA	NA	False	NA	NA	NA	1965	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1499_1553
98335	chr13	+	895	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-13	56	-13	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	286	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAAATAAAGCTTTTTG	7949	False	NA	NA	False	NA	NA	NA	74554514	74555409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
98336	chr4	+	2833	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4864	59424	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	76.1162761832185	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147394994	147477615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724_147416664_147476104
98337	chr4	+	4223	7	Intergenic	novelGene_2072	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	160.063181969565	7	39	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146365121	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146428065_146428160_146435241_146435318_146797295_146797381_146800390_146800518_146802050_146803197_146803449
98338	chr12	-	2493	3	FSM	ENSMUSG00000001270.10	ENSMUST00000222513.2	719	3	-14	-1760	-14	-2	multi-exon	FALSE	canonical	3	7551	junction_1	185	76	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111638014_111638199_111638408_111638663
98339	chrX	+	2017	14	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-5641	-477	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	943.923562746313	9	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTAGCCATCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	20538674	20548941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20538755_20539064_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
98340	chr17	+	1617	6	NIC	ENSMUSG00000024160.17	novel	1641	7	NA	NA	4	-1	intron_retention	FALSE	canonical	3	99	junction_1	41.3356988570412	58	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCTGCCTGTGTCTATTG	NA	False	NA	NA	False	NA	NA	NA	25105714	25111120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109910_25109984_25110111_25110333
98341	chr9	-	704	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	-35	-54	-35	54	mono-exon	FALSE	NA	NA	NA	NA	NA	25	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGTGACTGT	NA	False	NA	NA	False	NA	NA	NA	22097552	22096848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_22096800_22097600
98342	chr3	-	1034	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	-71	-78	71	mono-exon	FALSE	NA	NA	NA	NA	NA	849	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	149779257	149778223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778200_149779300
98343	chr5	+	319	1	Intergenic	novelGene_907	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	424	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCAACCCGGCGGCGCG	NA	False	NA	NA	False	NA	NA	NA	146197788	146198107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
98344	chr10	+	2952	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	23	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1963.88304524089	576	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGCTCGCAACTCTGT	2204	False	NA	NA	False	NA	NA	NA	81012487	81018329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81013993_81014549_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
98345	chr7	+	1502	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	472	-1	7	0	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	2	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46497026	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
98346	chr11	-	1242	2	Intergenic	novelGene_2287	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	57446924	57433741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57434139_57446079
98347	chrM	+	2499	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	104	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3309_3426
98348	chr5	+	908	5	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	1331	218	1175	-218	3prime_fragment	FALSE	canonical	3	6763	junction_4	4510.81835008904	3	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAACTCCGGTCTGGATT	NA	False	NA	NA	False	NA	NA	NA	115698856	115701568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
98350	chrM	+	3903	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	-56	-2265	-56	2265	mono-exon	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTACCTAGAAGTTTAGG	344	False	NA	-34	True	NA	NA	NA	1037	4940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1000_4900
98351	chr4	+	2137	7	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-5	256533	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	79.3804132012425	1	31	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146033876	146319724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034063_146036249_146036316_146058453_146058581_146060726_146060865_146061362_146061970_146062389_146063091_146319412
98352	chr4	+	1680	4	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	49	-11935	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_3	71.9181633679714	2	15	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCACAGAGAGTAAGAGGGAA	NA	False	NA	NA	False	NA	NA	NA	146695466	146730129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146695757_146697966_146698060_146703608_146703692_146728915
98353	chr17	-	2204	1	NIC	ENSMUSG00000024165.10	novel	1430	6	NA	NA	15963	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	101	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGCCAATATTTTTCT	NA	False	NA	NA	False	NA	NA	NA	25163647	25161443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25161400_25163600
98354	chr7	+	4412	5	FSM	ENSMUSG00000011427.17	ENSMUST00000178162.3	3356	5	-29	-1027	-29	1027	multi-exon	TRUE	canonical	2	3	junction_1	16.6789538041209	4	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGACCAGATTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	29515509	29531457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29515715_29522494_29522570_29524254_29524379_29525116_29525213_29527545
98355	chr17	+	1227	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	19	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2159.54873758385	3	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3055	False	NA	NA	False	NA	NA	NA	35816933	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820077_35820304_35820371_35820877_35821037_35821184
98356	chr17	+	1084	7	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	40	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1958.24672148895	87	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3076	False	NA	NA	False	NA	NA	NA	35816954	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817203_35817312_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184_35821274_35821394
98357	chr19	+	3087	8	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	2	1778	intron_retention	FALSE	canonical	2	13	junction_5	11.9608203936768	51	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATAAAGAGCATTTGCCTG	NA	False	NA	NA	False	NA	NA	NA	58500454	58543295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
98358	chrM	+	839	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	305	0	305	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	153	False	NA	-80	True	NA	NA	NA	14449	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14400_15300
98359	chr2	-	886	3	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11054	190	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	11425895	11413651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414036_11414131_11414383_11425644
98360	chr14	+	2097	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	23	1103	23	-7	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	2	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAATCCTCAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	30271110	30295574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
98361	chr11	-	2771	5	FSM	ENSMUSG00000049291.7	ENSMUST00000061481.7	1243	5	-13	-1515	-13	1515	multi-exon	FALSE	canonical	2	4	junction_3	3.57071421427143	66	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAATTTGCTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	59266496	59261979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59263997_59264251_59264395_59264991_59265264_59265982_59266146_59266320
98362	chrX	+	2377	17	NNC	ENSMUSG00000000787.13	novel	4692	17	NA	NA	0	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	142.295782944366	8	22	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGCACACAGGTGTGAT	NA	False	NA	NA	False	NA	NA	NA	13147260	13158150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154809_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156541_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
98364	chr1	-	3097	6	Fusion	ENSMUSG00000026211.19_ENSMUSG00000032997.17	novel	3065	5	NA	NA	-269	-1	multi-exon	FALSE	canonical	0	0	junction_4	55.1507026247173	42	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGAATAATGAGTGGAAACT	NA	False	NA	NA	False	NA	NA	NA	75464146	75451220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr1_-_75452871_75453203_75453384_75453888_75454463_75454913_75455057_75463283_75463554_75463866
98366	chr14	+	1199	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-179	-684	-179	684	mono-exon	FALSE	NA	NA	NA	NA	NA	3	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTTCTAACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13669258	13670457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
98367	chr14	+	1143	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-102	-705	-102	705	mono-exon	FALSE	NA	NA	NA	NA	NA	128	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTTACAGTGTTTGTG	NA	False	NA	NA	False	NA	NA	NA	13669335	13670478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
98368	chr9	-	2814	1	Intergenic	novelGene_1141	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTACTTCTATCTTGTGAAAA	NA	False	NA	NA	False	NA	NA	NA	98139622	98136808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_98136800_98139600
98369	chr5	+	393	1	ISM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	2705	1157	2502	-1157	mono-exon	FALSE	NA	NA	NA	NA	NA	2	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	3047	False	NA	NA	False	NA	NA	NA	129099837	129100230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129099800_129100200
98370	chr8	+	2625	10	Antisense	novelGene_ENSMUSG00000031730.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCCGGTAGTGCGCACT	NA	False	NA	NA	False	NA	NA	NA	110317491	110335311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_110317969_110320058_110320764_110321251_110321408_110321543_110321702_110322278_110322390_110322658_110322852_110328056_110328141_110329937_110330138_110332842_110333056_110334983
98371	chr4	-	1205	8	NNC	ENSMUSG00000041459.16	novel	6425	7	NA	NA	34	-6	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	480.063048580335	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATATGTGTCTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	148711177	148701325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148701566_148702022_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
98372	chr3	-	2944	8	NNC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	16589	-887	intron_retention	TRUE	non_canonical	0	0	junction_4	440.604408622927	4	56	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCTAGGCCACGACCCAGA	NA	False	NA	NA	False	NA	NA	NA	104708081	104703038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104703302_104704082_104704158_104704285_104704478_104704590_104705883_104706331_104707112_104707261_104707366_104707590_104707750_104708002
98373	chr9	+	3375	1	Antisense	novelGene_ENSMUSG00000097504.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	144	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAATAACCTCGTCTG	NA	False	NA	NA	False	NA	NA	NA	119267817	119271192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_119267800_119271200
98375	chr9	-	1201	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5031.81154655061	497	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8145	False	NA	-35	True	NA	NA	NA	78387961	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386046_78386723_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
98376	chr18	-	2049	2	Intergenic	novelGene_4493	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	40	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATGGCGCAAGCAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	6854561	6801726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_6803517_6854302
98377	chr6	-	2812	1	NIC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	-19	-2507	mono-exon	FALSE	NA	NA	NA	NA	NA	5	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATCAGTGTCTGAGGC	7886	False	NA	NA	False	NA	NA	NA	124806417	124803605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124803600_124806400
98378	chr15	-	4741	2	Intergenic	novelGene_3372	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	39	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCACATGCAGGATAGGG	NA	False	NA	NA	False	NA	NA	NA	100173000	100167927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_100170251_100170582
98379	chr12	-	1128	6	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-35	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3142.16842323896	504	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638013	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637785_111637886
98380	chr4	-	2251	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	39	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	612.890914214979	2	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCTGAGGCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	137523656	137469057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469768_137469816_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481269_137482908_137483061_137485882_137486044_137523552
98381	chr4	+	2421	4	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	7	119382	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	72	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAACTGTACTGTACTGCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147537573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216737_147390145_147390519_147534238_147534577_147536098
98382	chr5	-	5064	30	Antisense	novelGene_ENSMUSG00000045482.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	56	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAACCTGGATGTGGGGAA	NA	False	NA	NA	False	NA	NA	NA	144771320	144740854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_144741108_144741507_144741670_144741791_144741891_144742497_144742618_144742861_144743033_144744130_144744202_144748704_144748823_144750241_144750363_144751217_144751382_144751478_144751662_144752160_144752358_144752739_144752869_144753119_144753387_144754404_144754612_144754742_144754904_144755001_144755131_144756511_144756616_144757051_144757204_144758581_144758795_144759498_144759635_144761272_144761412_144762026_144762230_144762681_144762804_144763327_144763542_144765274_144765455_144767713_144767865_144769259_144769378_144769715_144770008_144770110_144770242_144770963
98383	chr4	+	2132	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	5	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	204.063715540024	9	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGATTGTTTCCAA	917	False	NA	NA	False	NA	NA	NA	145237351	145265757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160_145263542_145264381
98384	chr14	+	2148	10	FSM	ENSMUSG00000040618.8	ENSMUST00000048781.4	3400	10	125	1127	1	18	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTCTGATAAGAGATGCAC	9016	False	NA	NA	False	NA	NA	NA	55777847	55786347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
98385	chr12	-	2323	1	Antisense	novelGene_ENSMUSG00000113361.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	21	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATATTTTTAAAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	110558037	110555714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_110555700_110558000
98386	chr8	+	4117	23	NNC	ENSMUSG00000031592.11	novel	6484	39	NA	NA	-1	18670	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	52.2931383075216	1	66	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGTAAGAAGAGGAATTC	NA	False	NA	NA	False	NA	NA	NA	41692787	41746801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_41693001_41709032_41709148_41710942_41711074_41712073_41712344_41714047_41714219_41714396_41714514_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728031_41728206_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746493
98388	chr18	+	1746	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	2	-1	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	9	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
98389	chr11	-	2351	10	NIC	ENSMUSG00000025580.16	novel	1509	12	NA	NA	8	0	intron_retention	FALSE	canonical	2	960	junction_1	148.566317236727	2	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	NA	False	NA	NA	NA	119190907	119179188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_119179386_119179485_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119186362_119186892_119186960_119188630_119188704_119190653
98390	chr13	+	2866	7	NNC	ENSMUSG00000095909.3	novel	449	3	NA	NA	-162835	1318	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	97.4960113144236	3	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66098458	66271968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66098504_66264730_66264842_66267450_66267578_66267777_66267839_66269026_66269485_66269736_66270191_66270358
98391	chr13	+	741	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	140	57	140	-57	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAAAATAAAGCTTTTT	8102	False	NA	NA	False	NA	NA	NA	74554667	74555408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554700_74555400
98392	chr12	-	2739	4	Antisense	novelGene_ENSMUSG00000114119.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	1.63299316185545	8	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACATACTGGAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	22930420	22917600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_22920054_22921387_22921449_22921646_22921774_22930322
98393	chr4	-	3346	8	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-27	-18	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	98.3459117978319	3	87	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTGAAAGTTTCAACAAGT	9496	False	NA	NA	False	NA	NA	NA	147894272	147838448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147868857_147868955_147880110_147880188_147889674_147889780_147891546_147891641_147893775
98394	chr9	+	5646	24	Intergenic	novelGene_989	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGCCCAGGCGCGGCGG	NA	False	NA	NA	False	NA	NA	NA	8994576	9238780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_8997687_8998166_8998247_9003620_9003684_9005734_9005891_9006256_9006640_9007966_9008114_9009277_9009438_9011336_9011443_9015300_9015357_9016141_9016230_9016964_9017043_9018206_9018268_9029423_9029464_9030794_9030873_9033470_9033582_9035509_9035610_9046504_9046636_9048888_9048994_9059049_9059160_9074908_9075017_9115695_9115766_9155306_9155366_9180027_9180124_9238630
98395	chr2	+	5960	17	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	152	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCATACAAATCAGCATTAG	1092	False	NA	NA	False	NA	NA	NA	4995563	5015587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4996287_4996904_4997124_4997225_4998668_4999379_4999496_5000532_5000677_5001922_5002142_5003342_5003452_5003540_5003651_5004490_5004594_5005672_5005868_5006074_5006194_5008820_5008985_5009751_5011390_5011877_5012013_5012138_5012244_5013290_5013621_5015498
98396	chr2	-	2818	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	3176	1737	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	437.731652956466	1	76	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	5524	False	NA	NA	False	NA	NA	NA	177266816	177259259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177261259_177261510_177262087_177263226_177263288_177263479_177263607_177266761
98397	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
98398	chr18	+	1175	2	Intergenic	novelGene_4501	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCGCTCTTGAATAAAAATC	NA	False	NA	NA	False	NA	NA	NA	9596675	9597914	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_9596755_9596818
98399	chr3	-	6055	1	NIC	ENSMUSG00000069094.13	novel	6298	13	NA	NA	860	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	87	55	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAATATCAAAGTCTACC	6706	False	NA	NA	False	NA	NA	NA	19283332	19277277	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_19277300_19283300
98400	chr5	-	1183	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	68	-11	11	11	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	77	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTCCTTCCTGTGTCTGG	NA	False	NA	NA	False	NA	NA	NA	117425622	117420707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
98402	chr1	-	8090	41	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9508	1507	at_least_one_novel_splicesite	FALSE	canonical	3	100	junction_40	232.548382062744	25	10	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGTGGTGCTGACAGAT	NA	False	NA	NA	False	NA	NA	NA	84827745	84700477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84827643
98403	chr4	+	2116	7	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14297	91933	multi-exon	FALSE	non_canonical	0	0	junction_2	21.7389818835504	4	23	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAGATAGTGGAAAATGT	NA	False	NA	NA	False	NA	NA	NA	145159012	145269391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036_145176318_145176484_145177478_145180016_145180385_145262466_145262552_145268910_145268963_145269193
98405	chr11	+	1778	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	47	275	3	-275	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1971	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAAATATATCATGCCT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
98406	chrX	+	1161	2	Intergenic	novelGene_3896	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	54	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	29287615	29488596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_29287768_29487587
98407	chr13	-	3417	7	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-24	1306	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	83.428612198294	7	70	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66846331	66816685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66819455_66821007_66821069_66821267_66821395_66832180_66832305_66833395_66833450_66834628_66834801_66846221
98408	chrM	+	2564	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	584	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_3524_3576
98409	chr15	+	2482	15	Intergenic	novelGene_3298	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGTGCTCCCGGGGATGT	NA	False	NA	NA	False	NA	NA	NA	58815505	58953911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_58815980_58817165_58817374_58817694_58817873_58819176_58819370_58823318_58823532_58825364_58825459_58826952_58827062_58828280_58828442_58840691_58840763_58842825_58842918_58844324_58844407_58926863_58926940_58930208_58930270_58953303_58953424_58953561
98410	chr17	+	3233	20	Antisense	novelGene_ENSMUSG00000024170.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	116	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAACGCGCTGATGACCG	992	False	NA	119	True	NA	NA	NA	25318565	25334913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_25319095_25320272_25320389_25320613_25320676_25320981_25321084_25321609_25321705_25322555_25322744_25323578_25323657_25323786_25323893_25324049_25324158_25324330_25324409_25324703_25324822_25324965_25325035_25325741_25325852_25325938_25326100_25326297_25326412_25329199_25329311_25329687_25329828_25330088_25330155_25333904_25334260_25334386
98411	chr15	-	1736	13	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	448.202730357592	7	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAGGCCGTGCAGTGCAGT	NA	False	NA	NA	False	NA	NA	NA	96953835	96894648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907010_96910795_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
98412	chr15	-	2532	8	Antisense	novelGene_ENSMUSG00000115902.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	98	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCAGTGGTTTGGGATAC	NA	False	NA	NA	False	NA	NA	NA	79792004	79775907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79776022_79779610_79779763_79781893_79782172_79782310_79782425_79783218_79783318_79789639_79790797_79791046_79791163_79791502
98413	chr1	+	5366	12	Antisense	novelGene_ENSMUSG00000073643.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGCCGGGCGGGGACGCG	NA	False	NA	NA	False	NA	NA	NA	79679985	79739456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_79683288_79683960_79684070_79685168_79685300_79686809_79686911_79690722_79691681_79692590_79692716_79702359_79702477_79704283_79704434_79707372_79707427_79711515_79711593_79717780_79717849_79739282
98414	chr14	-	475	1	FSM	ENSMUSG00000063556.6	ENSMUST00000099431.6	468	1	49	-56	49	56	mono-exon	FALSE	NA	NA	NA	NA	NA	6	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATGGATTCCCAGGAA	NA	False	NA	NA	False	NA	NA	NA	77489705	77489230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_77489200_77489700
98416	chr4	+	2716	4	NIC	ENSMUSG00000012126.17	novel	2014	11	NA	NA	-266	0	intron_retention	FALSE	canonical	3	96	junction_2	7.48331477354788	7	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAGCTTCACAAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	133851095	133854086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_133852266_133852376_133853592_133853676_133853818_133853896
98417	chr2	-	2632	12	NNC	ENSMUSG00000039536.17	novel	2976	12	NA	NA	-13	1	intron_retention	FALSE	canonical	0	0	junction_7	87.0486707215002	5	46	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTTGTTAATTTATTT	NA	False	NA	NA	False	NA	NA	NA	166838036	166790191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795244_166796861_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
98418	chr1	-	3642	14	Antisense	novelGene_ENSMUSG00000028354.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	102	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAATTGCCATGCCCAGGC	NA	False	NA	NA	False	NA	NA	NA	174650295	174436613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_174437517_174440070_174440216_174474669_174474758_174494206_174494271_174521752_174521845_174521997_174522126_174523149_174523299_174526334_174526393_174527119_174527241_174547408_174547502_174571818_174571871_174618821_174618974_174647515_174647602_174648784
98419	chr16	+	1893	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	1	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	2	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
98420	chr15	-	2416	18	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCCCAGCCTGGTTA	NA	False	NA	NA	False	NA	NA	NA	12881813	12825002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12825025_12826150_12826253_12827311_12827378_12833913_12834250_12834353_12834746_12837365_12837460_12842140_12842254_12842385_12842617_12846152_12846293_12848135_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865183_12866646_12866729_12867679_12867755_12878738_12878913_12881707
98421	chr9	+	3032	4	NIC	ENSMUSG00000037845.15	novel	2658	5	NA	NA	1	72	intron_retention	TRUE	canonical	3	72	junction_2	2.62466929133727	227	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCCACCTGGGGATCCA	NA	False	NA	NA	False	NA	NA	NA	50679551	50684720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_50679756_50679987_50680145_50681409_50682091_50682730
98422	chr4	+	5342	11	Fusion	ENSMUSG00000063245.12_ENSMUSG00000086147.3	novel	1275	6	NA	NA	19	718	multi-exon	TRUE	non_canonical	0	0	junction_4	116.757398052543	6	98	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	146695436	147075930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146695586_146697966_146698060_146703608_146703692_146728915_146730900_146739355_146739414_146740256_146740384_146741834_146742212_146914588_146914788_147073489_147074592_147074675_147075046_147075130
98423	chr13	-	7788	29	NNC	ENSMUSG00000014850.16	novel	3937	24	NA	NA	-32869	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	45.7403246153585	80	63	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGCTCATTGCATGGCG	6455	False	NA	NA	False	NA	NA	NA	92524380	92348393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372240_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411233_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478876_92481463_92481608_92483238_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270_92491848_92492151_92492206_92494432_92494536_92502167_92502298_92504690_92504809_92521232
98424	chr17	-	1116	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	32	423	mono-exon	FALSE	NA	NA	NA	NA	NA	22	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACGGAATCGAGAAAGAGCT	NA	False	NA	NA	False	NA	NA	NA	40159686	40158570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40158600_40159700
98425	chrX	+	8182	28	NIC	ENSMUSG00000034480.19	novel	8439	27	NA	NA	47	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_24	24.3627140962256	66	18	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCAGTCTCTGATTCCGA	NA	False	NA	NA	False	NA	NA	NA	128650771	129366583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_128650866_128702143_128702177_128704761_128704939_128721987_128722093_128726675_128726697_128803648_128803789_128839993_128840069_128840151_128840222_128843647_128843785_128844591_128844701_128853421_128853533_128856642_128856762_128857991_128858109_128860792_128860912_128863668_128863734_128867274_128867380_128872027_128872343_128873243_128873359_128948073_128948176_128951115_128951211_128974570_128974673_128989275_128989516_129010000_129010131_129079684_129079812_129159827_129159991_129190602_129190739_129228714_129228811_129361619
98426	chr8	-	4243	6	Antisense	novelGene_ENSMUSG00000110669.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTGTGCACTTCCCAAA	NA	False	NA	NA	False	NA	NA	NA	20045127	19834758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_19834861_20030544_20030754_20035856_20036159_20037902_20038097_20039783_20039902_20041809
98428	chr13	+	5939	12	NNC	ENSMUSG00000062822.9	novel	2795	13	NA	NA	53	-6	intron_retention	TRUE	non_canonical	0	0	junction_1	61.1114684019942	16	89	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGAACTATTTCATTT	NA	False	NA	NA	False	NA	NA	NA	119599372	119622647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_119603179_119603394_119603493_119606050_119606698_119608702_119608777_119610368_119610731_119611368_119611461_119612472_119612543_119614219_119614391_119615961_119616059_119617470_119617567_119620988_119621030_119622262
98429	chrX	-	3570	10	NIC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	2214	-824	intron_retention	FALSE	canonical	0	0	junction_4	107.877502545969	1	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCTGATGGCTGAAGCC	NA	False	NA	NA	False	NA	NA	NA	72998821	72991624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995531_72995675_72995778_72995999_72996167_72996657_72996930_72997129_72998187_72998349_72998619
98430	chr15	-	3501	15	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	54	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGACCCGGATGAGGCAG	3527	False	NA	NA	False	NA	NA	NA	102005606	101982362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982394_101990405_101990548_101992594_101992805_101993113_101993229_101994435_101994491_101994937_101995075_101997050_101997188_101997291_101997356_101998385_101998528_101999829_101999928_102001418_102001633_102002090_102002147_102003104_102003211_102003409_102003483_102003685
98431	chrX	-	1993	9	Antisense	novelGene_ENSMUSG00000031311.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	59	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGAAACGAGCCGACGGA	NA	False	NA	NA	False	NA	NA	NA	100492059	100473290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_100473367_100474096_100474157_100480812_100480992_100483102_100483286_100485120_100485420_100486531_100486632_100486900_100487097_100487881_100487924_100491201
98432	chr7	+	1313	7	NNC	ENSMUSG00000063229.16	novel	1277	7	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3021.28082202823	1	55	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGATGGCTCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	46495291	46505044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500362_46503406_46503531_46504400
98433	chr1	+	2638	2	Intergenic	novelGene_451	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	109	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	4938	False	NA	NA	False	NA	NA	NA	134330485	134333212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_134331072_134331160
98434	chr4	-	3850	4	Intergenic	novelGene_2089	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGACCCGCCCAATACT	NA	False	NA	NA	False	NA	NA	NA	146438707	146426513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146426724_146427464_146427545_146428065_146428158_146435239
98436	chr14	-	2175	6	NIC	ENSMUSG00000007589.10	novel	3130	8	NA	NA	-5	1102	intron_retention	FALSE	canonical	3	280	junction_3	36.1386219991853	18	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTAGGTCATTCCTC	NA	False	NA	NA	False	NA	NA	NA	55919237	55916561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55916867_55916970_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
98437	chr4	+	1182	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	34	38	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTCTTCTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	91739796	91740978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739800_91741000
98438	chr4	-	2980	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	101.321271211923	8	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9497	False	NA	NA	False	NA	NA	NA	147894271	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147880110_147880185_147891546_147891641_147893953
98439	chr4	+	2843	7	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-12	723	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	17.1893054607283	1	114	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTTGGTTGTTTCCAAT	NA	False	NA	NA	False	NA	NA	NA	147056420	147075935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056568_147058404_147058509_147065612_147065693_147067150_147067255_147071108_147071218_147073383_147074794_147075046
98440	chr15	-	3240	1	Intergenic	novelGene_3223	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	1948	False	NA	NA	False	NA	NA	NA	22703061	22699821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699800_22703100
98441	chr13	-	12386	2	Intergenic	novelGene_1310	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	48	48	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	8952592	8811993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_8817154_8945366
98443	chr7	+	4227	25	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	235.523438176661	4	163	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCTTGATCTGATTGC	7239	False	NA	NA	False	NA	NA	NA	109617521	109655324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650080_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
98444	chr2	+	1952	3	Antisense	novelGene_ENSMUSG00000085513.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	59	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGACAGCTACAGTGTACT	NA	False	NA	NA	False	NA	NA	NA	176952662	177259147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_176953396_177203138_177204021_177258810
98445	chrM	-	887	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	436	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGTTTGCGTGTATATATCG	900	False	NA	60	True	NA	NA	NA	15288	14401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14400_15300
98446	chr4	+	4203	21	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	7	2671	intron_retention	FALSE	non_canonical	0	0	junction_13	433.881467108241	12	86	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGACTCGGTCCGCCCCG	9988	False	NA	NA	False	NA	NA	NA	155954030	155976231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972640_155972784_155972852_155972983_155973076_155973624_155973888_155974051_155974120_155975123_155975200_155975696_155975813_155975873_155976087
98447	chr15	-	4349	1	Intergenic	novelGene_3236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	195	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTACTCTAGAGGGGGC	9795	False	NA	NA	False	NA	NA	NA	22705095	22700746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22700700_22705100
98448	chr4	+	2845	7	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-13	722	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.2024475964891	535	53	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056419	147075934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056568_147058420_147058498_147067150_147067255_147071090_147071218_147073383_147074583_147074665_147075052_147075130
98450	chr15	-	5051	36	NNC	ENSMUSG00000022568.18	novel	5440	36	NA	NA	383	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_21	80.3212122845338	97	55	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCTCTTGTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	75941220	75919013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921898_75921962_75923250_75923326_75923469_75923527_75923602_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934517_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758_75936926_75936998_75937199_75937938_75938058_75938458_75938604_75938668_75938744_75938842_75938907_75938993_75939051_75939138_75939229_75939325_75939405_75939509_75939628_75941077
98451	chr15	+	576	1	Intergenic	novelGene_3340	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTAGATCAGGCTGGCC	4149	False	NA	NA	False	NA	NA	NA	86078949	86079525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_86078900_86079500
98453	chr4	-	4694	4	NIC	ENSMUSG00000043085.15	novel	2478	5	NA	NA	-43	639	intron_retention	FALSE	canonical	3	77	junction_1	16.391054470859	52	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACCAGGTTGCATGCGTA	NA	False	NA	NA	False	NA	NA	NA	141345335	141340047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_141342018_141342255_141344781_141344950_141345024_141345209
98454	chr4	-	2731	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-31923	63754	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.834128686216	32	40	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025970	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913118_146914042_146914404_146976195_146976629_146976961_146977116_146978205_146978333_146982168_146982279_147021745_147022474_147025871
98455	chr17	-	2332	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	3150.19722588657	78	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884199	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879189_45879375_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
98456	chr15	-	2795	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	72	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAATCCTCTTGCAATT	9796	False	NA	NA	False	NA	NA	NA	22705094	22699846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22702392_22704844
98457	chr2	+	3876	20	FSM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	31	2	31	-2	multi-exon	FALSE	canonical	3	120	junction_10	16.3671517531211	3	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGGTATCTGCATTTC	NA	False	NA	NA	False	NA	NA	NA	150628685	150673676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716_150650821_150653173_150653306_150655310_150655423_150655840_150655924_150656905_150657050_150657537_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
98458	chr4	+	4264	5	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-18	-1	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_1	199.655171483235	3	64	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146093375	146135324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126784_146126867_146129876_146130004_146131535
98459	chr5	-	1680	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1951.2737720098	13	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889338_142889518_142889697_142889821_142890004_142890098_142890506_142890987_142891232_142891318_142891448_142892406
98460	chr17	+	1422	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	287	-98	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	55	True	NA	NA	NA	40157530	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40158599_40158640
98461	chr4	+	2369	6	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.2731874562585	137	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147394998	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147398491_147398579_147409230_147409335_147413438_147413566_147415724_147417219_147417782
98462	chr8	+	2592	18	NNC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-50602	-2768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGCGCCCGAGGTCGC	NA	False	NA	NA	False	NA	NA	NA	96482769	96534061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96482922_96483969_96484122_96486724_96486878_96487130_96487252_96487912_96488068_96489616_96489858_96491083_96491213_96491607_96491779_96496128_96496242_96496373_96496499_96497169_96497339_96498598_96498803_96500059_96500113_96500196_96500268_96501257_96501357_96501906_96502015_96515257_96515535_96533962
98463	chr9	-	731	1	Antisense	novelGene_ENSMUSG00000062933.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1248	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAGCCGTGTCAGGTG	9527	False	NA	NA	False	NA	NA	NA	96778407	96777676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_96777700_96778400
98464	chr9	-	2782	4	Antisense	novelGene_ENSMUSG00000064925.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGCGGCCGGAAATGAC	NA	False	NA	NA	False	NA	NA	NA	119960599	119956853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_119956896_119957521_119959959_119960062_119960230_119960463
98465	chr17	-	2456	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	-1	intron_retention	FALSE	non_canonical	0	0	junction_7	3286.68282619422	41823	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCTGCTCTCCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	45884195	45878701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45882004_45882104_45882338_45882546_45882690_45882838_45884092
98467	chr17	+	1845	1	FSM	ENSMUSG00000066170.8	ENSMUST00000095448.5	2055	1	-43	253	-43	-253	mono-exon	FALSE	NA	NA	NA	NA	NA	23	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGTCATGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	28742223	28744068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28742200_28744100
98468	chr14	+	3950	22	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	9	-2	intron_retention	FALSE	canonical	3	463	junction_11	41.6864442857412	2	94	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGCTGGCCTCCTTTCC	NA	False	NA	NA	False	NA	NA	NA	32043984	32070106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32067140_32068354_32068811_32069462
98469	chr11	-	2083	3	Antisense	novelGene_ENSMUSG00000048070.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.5	41	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTATTATTAAGTATATAT	NA	False	NA	NA	False	NA	NA	NA	66804941	66787387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_66788829_66788961_66789509_66804846
98470	chr11	-	2774	5	FSM	ENSMUSG00000049291.7	ENSMUST00000061481.7	1243	5	-13	-1518	-13	1518	multi-exon	TRUE	canonical	2	4	junction_3	3.57071421427143	69	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	59266496	59261976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59263997_59264251_59264395_59264991_59265264_59265982_59266146_59266320
98471	chrX	+	3537	12	Antisense	novelGene_ENSMUSG00000035150.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	128	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCGGCAGCCGCCTGACA	NA	False	NA	NA	False	NA	NA	NA	93232322	93256262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93234518_93239867_93240012_93240886_93241063_93243318_93243467_93244513_93244591_93246419_93246554_93247554_93247718_93248657_93248729_93252913_93253039_93253121_93253266_93255320_93255388_93256169
98472	chr10	+	2975	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1898.57666343468	33	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015446_81015544_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
98473	chr11	-	3443	10	FSM	ENSMUSG00000063652.11	ENSMUST00000076493.11	3461	10	12	6	12	-6	multi-exon	FALSE	canonical	0	0	junction_1	1.87247772737252	20	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAATAAATAATAGCAAC	NA	False	NA	NA	False	NA	NA	NA	53871146	53840796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_53842182_53842532_53842669_53843826_53844010_53845513_53845729_53846810_53846921_53848799_53848927_53850029_53850202_53851108_53851264_53860325_53860430_53870290
98474	chr8	+	1028	1	Antisense	novelGene_ENSMUSG00000063696.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCAGCCAACATCTTTAG	NA	False	NA	NA	False	NA	NA	NA	103591473	103592501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_103591500_103592500
98475	chr6	+	4523	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	334	10617	-25	2808	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	408	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATATGCATTAAATCCTGC	5819	False	NA	NA	False	NA	NA	NA	67243941	67264103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
98476	chr9	+	3853	23	NNC	ENSMUSG00000033335.18	novel	1772	12	NA	NA	110	2435	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	295.727999328398	1	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGGCGTGGACCCTTTAA	-3	True	NA	NA	False	NA	NA	NA	21368512	21421490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21368708_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389646_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415899_21416864_21417012_21418718_21419687_21420225_21420410_21420548_21420644_21421285
98477	chr16	-	3614	8	Antisense	novelGene_ENSMUSG00002076438.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	94	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGCCTAGCTGAGGGT	5468	False	NA	NA	False	NA	NA	NA	84616099	84571359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_84571440_84598449_84598525_84603720_84603828_84606226_84606381_84609782_84609984_84612052_84612155_84613151_84613639_84613691
98478	chr4	+	6576	17	Antisense	novelGene_ENSMUSG00000040044.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	86	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCACACTTCCGCGCGCC	NA	False	NA	NA	False	NA	NA	NA	34569304	34614913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_34571808_34572463_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579881_34584808_34584884_34585572_34585689_34586442_34586504_34586944_34587083_34593060_34593175_34595076_34595237_34597307_34599811_34605537_34605678_34607130_34607229_34611021_34611079_34614866
98479	chr17	-	2250	9	ISM	ENSMUSG00000040680.10	ENSMUST00000046525.10	2123	10	499	9	499	-9	3prime_fragment	TRUE	canonical	1	2	junction_8	4.32290411644765	23	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTAGAGGCTTTAGCAA	NA	False	NA	NA	False	NA	NA	NA	23964308	23960179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_23960946_23961170_23961250_23961330_23961457_23961535_23961869_23962193_23962348_23962528_23962654_23962726_23962819_23963516_23963692_23963908
98480	chr9	-	1417	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5324.52563353978	43	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGAAATCTGTGTTGGT	7153	False	NA	NA	False	NA	NA	NA	78388953	78385743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386747_78387223_78387431_78387522_78387703_78387792_78387971_78388920
98482	chrX	-	4591	13	NNC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	-2	139	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	98.5512768393523	1	138	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTGGAAAGTGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	104972911	104895469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911527_104918165_104921180_104921972_104922041_104923514_104923625_104931320_104931448_104932598_104932652_104934522_104934579_104943486_104943600_104972564
98483	chrUn_MU069435v1	+	587	1	Intergenic	novelGene_4754	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCGGGCTTTCCCGTGG	NA	False	NA	NA	False	NA	NA	NA	0	587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
98484	chrM	+	714	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	243	0	-243	mono-exon	FALSE	NA	NA	NA	NA	NA	17	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATTATCTTCCTAGGACC	-2	True	NA	109	True	NA	NA	NA	2750	3464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3500
98485	chr16	-	1730	7	Antisense	novelGene_ENSMUSG00000055692.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	101	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCCAGAGCTCCGCCCC	469	False	NA	NA	False	NA	NA	NA	17096524	17094178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_17094331_17094495_17094619_17094697_17095113_17095203_17095260_17095385_17095457_17095532_17095751_17095829
98486	chr13	+	2374	5	Intergenic	novelGene_1458	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	134	135	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGATCTTTTAGAAAGTC	5850	False	NA	NA	False	NA	NA	NA	66939254	66950624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66940606_66940856_66941595_66942700_66942762_66942961_66943089_66950527
98487	chr5	-	1003	5	NNC	ENSMUSG00000029580.15	novel	1242	5	NA	NA	-62153	-2	intron_retention	TRUE	non_canonical	0	0	junction_1	1762.36169670133	30	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	142954662	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889574_142891339_142891448_142892406_142892483_142940119_142940215_142954640
98488	chr11	+	1780	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-267	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	4268.40042170366	19	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650249_75655445
98489	chr4	+	4950	2	Antisense	novelGene_ENSMUSG00000079993.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	127	49	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCAGGCTACTATACCC	NA	False	NA	NA	False	NA	NA	NA	8133267	8193225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_8137000_8192007
98490	chr9	-	2421	13	NNC	ENSMUSG00000032113.17	novel	3397	13	NA	NA	-26	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	127.34293157542	1	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGGTCCTGTATTCCTT	695	False	NA	NA	False	NA	NA	NA	36637907	36620733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637202_36637858
98491	chr6	-	2001	11	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	68	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1682.35336359518	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAACCTGGGTGTCAGGCA	9337	False	NA	NA	False	NA	NA	NA	128415572	128407070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407515_128407657_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
98492	chr16	+	3079	7	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	0	-169	intron_retention	FALSE	non_canonical	0	0	junction_6	217.10321406086	30	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCACAGGCTGGTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	48130839	48139917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48137847_48138995_48139290_48139359
98493	chr11	+	1902	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	139	443	6	186	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940657	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
98494	chr2	+	2281	13	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	7	-1376	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	5.83749851296674	11	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGCCTGAGGCCTCCA	2764	False	NA	NA	False	NA	NA	NA	30023824	30040649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30033399_30033529_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
98495	chr15	-	3943	16	NNC	ENSMUSG00000023030.17	novel	4415	16	NA	NA	8	-400	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	46.9039680861036	2	19	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGATTGTCACTGAAAACG	NA	False	NA	NA	False	NA	NA	NA	100320875	100290843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301781_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
98496	chr1	+	4866	4	ISM	ENSMUSG00000026623.17	ENSMUST00000110855.8	7233	8	42328	1327	41641	-1327	3prime_fragment	FALSE	canonical	3	89	junction_2	7.84573486395988	3	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTAGAGAAAATAAAGTTG	NA	False	NA	NA	False	NA	NA	NA	191492273	191515040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_191492360_191495656_191495784_191508434_191508542_191510494
98497	chr11	-	4832	24	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGTGGGCTCAGAAGA	NA	False	NA	NA	False	NA	NA	NA	72342050	72332201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72332402_72332503_72332598_72333223_72333308_72333393_72333468_72333568_72333675_72334296_72334476_72334564_72334733_72334826_72334945_72335505_72335804_72336001_72336556_72336715_72336888_72336983_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
98498	chr15	+	2018	2	NIC	ENSMUSG00000003970.10	novel	824	3	NA	NA	57	-1	intron_retention	FALSE	canonical	3	10804	junction_1	0	3	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGGCGTGTGTGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	76788358	76790513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788881_76789017
98499	chr15	-	2074	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	71	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700888_22703995_22704555_22704649
98500	chr11	-	1790	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	28	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1252.4809601569	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGTGGTCTGTGCAGC	NA	False	NA	NA	False	NA	NA	NA	120472422	120468931	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469466_120469512_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
98501	chr16	-	983	2	Antisense	novelGene_ENSMUSG00000057880.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	25	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCAGGAACCTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	8380682	8372695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_8373432_8380435
98502	chr11	+	5670	14	Antisense	novelGene_ENSMUSG00000004393.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	20	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCTGTCAGTGCGCACGCG	NA	False	NA	NA	False	NA	NA	NA	6205165	6217730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_6209259_6209546_6209621_6211615_6211722_6212456_6212549_6212663_6212737_6213938_6214040_6214130_6214237_6214674_6214793_6215506_6215755_6216313_6216410_6216514_6216683_6216810_6216974_6217418_6217579_6217658
98503	chr4	+	5533	1	Intergenic	novelGene_1873	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1096	73	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820302	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66820300_66825800
98504	chr8	+	3629	5	NIC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-13	2267	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	15.1657508881031	7	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGGTCGTGGTA	NA	False	NA	NA	False	NA	NA	NA	129990108	130011592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_129990206_129993965_129994181_130007503_130007631_130007817_130007879_130008463
98505	chrX	+	4709	27	NNC	ENSMUSG00000000037.18	novel	1894	3	NA	NA	-12744	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	118.849190899706	26	71	16	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACAGCTAAGCCTTGGAT	8075	False	NA	NA	False	NA	NA	NA	159933001	160041203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_159933107_159936828_159936907_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975196_159975444_159985013_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011589_160011757_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160038025_160038178_160039561
98506	chr14	+	943	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-99	-159	1	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	21	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAACTC	NA	False	NA	NA	False	NA	NA	NA	46321485	46322428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
98507	chr17	-	3004	14	NNC	ENSMUSG00000024002.19	novel	5922	20	NA	NA	19204	-2634	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	76.5630806945736	5	34	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGGACAGCAGCCCCCA	NA	False	NA	NA	False	NA	NA	NA	32472135	32420077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_32420399_32421206_32421521_32421641_32421695_32430140_32430252_32431812_32432109_32432500_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32472014
98509	chr7	-	1416	9	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	6725.38012750023	9	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398347	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396926_126398207
98510	chr11	+	2860	12	NNC	ENSMUSG00000010554.15	novel	2054	12	NA	NA	-20	797	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	182.304078011174	281	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGATCCTGTTTGAATC	8560	False	NA	NA	False	NA	NA	NA	74661721	74709517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664476_74672860_74672971_74674883_74675084_74678380_74678522_74683028_74683145_74686577_74686644_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
98511	chr16	-	521	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	6000	False	NA	NA	False	NA	NA	NA	57225471	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
98512	chr9	+	4581	15	Antisense	novelGene_ENSMUSG00002076266.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.257539376818856	645	32	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGCTACAGGAAATGGT	194	False	NA	NA	False	NA	NA	NA	108480140	108531587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_108482355_108482533_108482619_108484489_108484558_108485109_108485252_108485800_108485968_108487095_108487147_108488831_108488950_108490924_108491037_108492225_108492348_108493878_108494026_108494568_108494631_108497253_108497328_108521226_108521568_108522131_108522194_108530771
98513	chr15	-	3938	5	NNC	ENSMUSG00000060429.13	novel	4919	7	NA	NA	221532	-3	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_4	6.21992765231236	59	13	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGCCTAGGCTTATAATT	9174	False	NA	NA	False	NA	NA	NA	55548174	55499786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_55502824_55506050_55506242_55511252_55511450_55539699_55539840_55547801
98514	chrX	+	2710	20	Antisense	novelGene_ENSMUSG00000031095.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	237.58787847868	7	66	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGATTGGGGGAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	37622451	37653064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_37622608_37625999_37626150_37627828_37628004_37628876_37628985_37629815_37629928_37630927_37631036_37632208_37632295_37633625_37633739_37634373_37634478_37635568_37635761_37636722_37636841_37637303_37637373_37638084_37638167_37638462_37638555_37638713_37638876_37639741_37639816_37640533_37640601_37641258_37641362_37650484_37650599_37652539
98515	chr3	-	9147	2	NIC	ENSMUSG00000001017.16	novel	1321	5	NA	NA	0	192	intron_retention	FALSE	canonical	3	1620	junction_1	0	43	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGCCAGGGCTACACCAGC	NA	False	NA	NA	False	NA	NA	NA	90416781	90406070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_90414934_90416497
98516	chr2	+	4294	14	NNC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	52.761493041128	4	115	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	NA	False	NA	NA	NA	152068783	152123772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_152068912_152090618_152090732_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
98517	chr8	-	1781	1	Genic_Genomic	ENSMUSG00000035439.14	novel	NA	NA	NA	NA	-3637	-1472	mono-exon	FALSE	NA	NA	NA	NA	NA	10	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTTTTGTTTGTTTGT	9098	False	NA	NA	False	NA	NA	NA	71712934	71711153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_71711200_71712900
98518	chr11	+	477	1	Intergenic	novelGene_2507	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCGGATGCCTGCATGAG	NA	False	NA	NA	False	NA	NA	NA	108902471	108902948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902500_108902900
98519	chr4	-	2642	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63788	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.834128686216	17	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTCAACAAATTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	146994047	146912364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146912762_146913071_146913454_146913958_146914368_146976158_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
98520	chr10	+	7435	8	NIC	ENSMUSG00000039835.17	novel	7321	7	NA	NA	1	-14	intron_retention	FALSE	canonical	2	6	junction_1	9.66584561373558	69	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCAATATTTGAAACTT	NA	False	NA	NA	False	NA	NA	NA	18283423	18409623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_18284263_18348666_18348820_18373780_18373906_18387297_18387491_18391776_18391909_18399538_18402791_18403283_18403417_18407015
98521	chr6	+	2678	7	Genic_Genomic	ENSMUSG00000107432.2	novel	523	1	NA	NA	-360	4572	multi-exon	FALSE	non_canonical	0	0	junction_1	0	48	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGTCAGCCAGAACCAGGG	NA	False	NA	NA	False	NA	NA	NA	88859276	88864731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_88861092_88861356_88861516_88861665_88861847_88862824_88863077_88863941_88864055_88864481_88864610_88864701
98522	chr13	-	3242	27	NNC	ENSMUSG00000016018.5	novel	3689	27	NA	NA	50	73	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	204.203460436981	1	83	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGACAGTGTTTTAGTGAC	7312	False	NA	NA	False	NA	NA	NA	113063856	113004315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032013_113032151_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054115_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
98523	chr7	+	918	1	NIC	ENSMUSG00000053877.13	novel	10654	34	NA	NA	7425	2866	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGCACCCACTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	127140356	127141274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127140400_127141300
98524	chr4	+	4283	9	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	3038	5	NA	NA	-30	63390	multi-exon	FALSE	non_canonical	0	0	junction_1	160.944672170283	62	54	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146586453	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146586609_146597241_146597335_146599380_146599500_146697966_146698060_146701208_146701284_146797295_146797381_146800390_146800518_146802050_146802609_146803029
98525	chrX	-	2276	11	ISM	ENSMUSG00000064127.14	ENSMUST00000115481.8	3729	16	12303	716	10120	-2	3prime_fragment	FALSE	canonical	3	55	junction_6	10.8535708409721	18	11	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCATCGCTGCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	12570094	12545989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_12546676_12547010_12547137_12550216_12550325_12550423_12550604_12551954_12552191_12553257_12553441_12555567_12555700_12559823_12559936_12562391_12562530_12569451_12569722_12569989
98526	chr11	-	3079	15	NIC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	0	-1	intron_retention	FALSE	canonical	3	409	junction_4	128.957456202439	1	84	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAATTTGACTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	70860785	70833908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_70834824_70834937_70835065_70835307_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
98527	chr6	-	1417	3	ISM	ENSMUSG00000030084.12	ENSMUST00000049845.6	5810	32	152	24969	152	-8573	5prime_fragment	FALSE	canonical	3	115	junction_2	13	1	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACGGAGAAGCAGGTGGG	NA	False	NA	NA	False	NA	NA	NA	89334547	89320965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_89321092_89331837_89332021_89333439
98528	chr4	+	2582	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.962960031426	8	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTATATTTAATTTAAATA	924	False	NA	NA	False	NA	NA	NA	145237358	145265487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237383_145257381_145257486_145261385_145261513_145263160
98529	chr4	+	2213	9	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-104097	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.6791255498225	1	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147533636	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533786_147534439_147534577_147578832_147578926_147637751_147637884_147639766_147639810_147665698_147665826_147667290_147667431_147668090_147668422_147668589
98530	chr5	+	5937	27	NNC	ENSMUSG00000036403.16	novel	5537	26	NA	NA	14	660	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	8.80021516681544	47	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGGACTTGGGAATATCT	NA	False	NA	NA	False	NA	NA	NA	76736561	76794973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_76736772_76739561_76739719_76741038_76741230_76741869_76742038_76743239_76743382_76745203_76745289_76749233_76749363_76750983_76751200_76754568_76754635_76757477_76757617_76759496_76759721_76763484_76763638_76764649_76764803_76769130_76769209_76772473_76772626_76778511_76778628_76778699_76778855_76779271_76779328_76780005_76780175_76781519_76781631_76781998_76782185_76784708_76784919_76785910_76786114_76786768_76786874_76788728_76788843_76792478_76794537_76794782
98531	chr16	+	564	1	Intergenic	novelGene_3791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
98532	chr3	+	1165	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	-69	19	-12	-9	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	164	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTATTTATAGAAACAGAAG	NA	False	NA	NA	False	NA	NA	NA	87826800	87830960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
98533	chr11	+	5880	23	NNC	ENSMUSG00000020790.15	novel	3324	23	NA	NA	10469	-762	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.1622501962612	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAATTTGCGCCCATCCC	6052	False	NA	NA	False	NA	NA	NA	72613451	72661285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72613590_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338_72659522_72659645
98534	chr16	-	564	1	Intergenic	novelGene_3792	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
98535	chr14	-	4327	1	Intergenic	novelGene_655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	85	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGGGTGACCACGTGCA	NA	False	NA	NA	False	NA	NA	NA	124271640	124267313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_124267300_124271600
98536	chr18	-	1891	1	FSM	ENSMUSG00000060096.6	ENSMUST00000072796.6	1005	1	-326	-560	-326	560	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64583086	64581195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64581200_64583100
98537	chr1	+	2790	1	Intergenic	novelGene_407	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAACGTTTCCGTGTCG	NA	False	NA	NA	False	NA	NA	NA	88731287	88734077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_88731300_88734100
98538	chr4	+	2892	6	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	14	722	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	126.646910740057	3	62	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056472	147075934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383_147074038_147074122
98539	chr17	-	9050	18	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10089	11696	intron_retention	FALSE	non_canonical	0	0	junction_1	337.039790038512	46	117	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGCAGGCAGGAAGAAGAC	2379	False	NA	NA	False	NA	NA	NA	6744510	6694226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6694506_6699275_6699319_6702404_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
98541	chr13	-	1744	1	Intergenic	novelGene_1488	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTACCTCTTACCTT	NA	False	NA	NA	False	NA	NA	NA	80853190	80851446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_80851400_80853200
98542	chr7	-	3295	1	NIC	ENSMUSG00000040435.13	novel	2333	3	NA	NA	49	-3	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	6	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATAAACTCTTACGTGTG	3910	False	NA	NA	False	NA	NA	NA	45175643	45172348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_45172300_45175600
98543	chr15	-	5084	22	NIC	ENSMUSG00000059323.15	novel	4235	26	NA	NA	8	-210	intron_retention	FALSE	canonical	3	182	junction_12	26.2429776807248	5	143	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGACAAGATCTTCGTGC	NA	False	NA	NA	False	NA	NA	NA	76524121	76510648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76523224_76523647_76523791_76523877_76523974_76524053
98544	chr18	-	959	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	21	-15	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	37	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
98545	chr4	+	5591	17	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.242061459137964	40	70	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGAGGGCGGGACCGGCA	NA	False	NA	NA	False	NA	NA	NA	135047817	135080482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051372_135052130_135052589_135054399_135054535_135056314_135056361_135056687_135056831_135059034_135059122_135059471_135059550_135065114_135065392_135067814_135067934_135068157_135068349_135069682_135069797_135071176_135071291_135071809_135074172_135074428_135074515_135080406
98546	chr6	-	2571	25	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_14	268.772282667978	35	25	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3117	False	NA	NA	False	NA	NA	NA	71885665	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71871940_71871998_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
98547	chr17	+	2813	7	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	439	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	103.5305912923	2	68	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17284813	17309878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284886_17298876_17299477_17305782_17305910_17306151_17306213_17307505_17308915_17309250_17309519_17309602
98548	chr2	+	2860	12	NIC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	455.80005040633	2	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCCCTAGGTGTCTGT	659	False	NA	NA	False	NA	NA	NA	26279365	26287138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
98549	chrX	-	4893	22	NIC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	0	1657	combination_of_known_junctions	FALSE	non_canonical	3	26	junction_5	327.325948626122	450	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTTCTGGGGAAGATATT	NA	False	NA	NA	False	NA	NA	NA	37665073	37620493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
98550	chr6	+	1352	10	Antisense	novelGene_ENSMUSG00000001642.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	564	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGCTGGCTCGGGCGCGCA	NA	False	NA	NA	False	NA	NA	NA	34280868	34294378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_34281277_34283476_34283556_34285911_34286000_34286512_34286596_34286898_34287003_34287447_34287570_34287858_34287940_34288858_34288974_34289574_34289743_34294274
98551	chr12	+	2419	6	Genic_Genomic	ENSMUSG00000116815.2	novel	1785	1	NA	NA	-10759	410	multi-exon	TRUE	non_canonical	0	0	junction_2	0.8	9	16	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGGAGAGAAATCTATGA	NA	False	NA	NA	False	NA	NA	NA	18687455	18700409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_18687731_18696480_18696608_18696807_18696869_18698202_18698754_18698836_18699174_18699341
98552	chr13	+	2434	7	Genic_Genomic	ENSMUSG00000113723.3	novel	902	4	NA	NA	-46857	344	multi-exon	FALSE	canonical	1	1	junction_2	16.0069429380573	1	65	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGCTTGTCTGAGATTC	NA	False	NA	NA	False	NA	NA	NA	66044992	66096740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_66045092_66076322_66076466_66085377_66085456_66090898_66091041_66092498_66092671_66093849_66093904_66094994
98553	chr14	+	379	3	ISM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	1199	1117	768	-3	3prime_fragment	FALSE	canonical	3	4092	junction_2	4547.5	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTAAAAAGCTCCTACACGT	NA	False	NA	NA	False	NA	NA	NA	24541984	24545910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_24542185_24543450_24543562_24545842
98554	chr3	-	863	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	109	5	109	-5	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	106	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTTTGCTTCTGTCCATTG	NA	False	NA	NA	False	NA	NA	NA	86049900	86045251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
98555	chrX	-	3496	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	325.116558882355	2	21	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256257	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93240995_93243340_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
98556	chr9	+	1971	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-82	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	606.29313042455	9	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	108183555	108215133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212383_108213846
98557	chr2	-	4503	4	NNC	ENSMUSG00000078902.4	novel	4516	4	NA	NA	39	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.4866931898779	3	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAAACTTGCTTCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	175017625	175008053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175012286_175013387_175013449_175013640_175013768_175017542
98559	chr16	+	1818	12	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	718.308872535789	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931385_22932276
98560	chr11	-	889	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	190	multi-exon	FALSE	non_canonical	0	0	junction_1	0	429	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGAAGCCTTT	4388	False	NA	NA	False	NA	NA	NA	20286086	20284821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285180_20285555
98561	chr6	+	2863	16	NNC	ENSMUSG00000034269.13	novel	3334	18	NA	NA	803	3793	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	23.0259756700027	2	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACATTCGCTTTGGCTCA	8920	False	NA	NA	False	NA	NA	NA	113055402	113098685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113055429_113081895_113082083_113082877_113083103_113086845_113086952_113087334_113087487_113087590_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801_113098123_113098528
98562	chr1	+	971	7	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	-5	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1207.01455620423	148495	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATCACAGCAGTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	63216282	63219643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616_63218800_63219466
98563	chr19	-	1567	11	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-30920	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	21.4699790405114	47	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGGAAAAAAAAATCTAACA	NA	False	NA	NA	False	NA	NA	NA	42307313	42271988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_42272120_42272561_42272706_42275611_42275717_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42297495_42297631_42307043
98564	chr13	-	1432	5	NNC	ENSMUSG00000074865.12	novel	2439	5	NA	NA	-81998	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	28.0133896556629	31	36	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGCTTGTGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	62801011	62664612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62665059_62665841_62666545_62667985_62668047_62668231_62668359_62800916
98565	chr3	+	7029	7	NIC	ENSMUSG00000027804.14	novel	3777	9	NA	NA	43	154	intron_retention	FALSE	canonical	3	2177	junction_3	242.152442803197	10	155	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATAAAGTTTTATTTA	NA	False	NA	NA	False	NA	NA	NA	79498714	79511111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_79498865_79500916_79501058_79502508_79506222_79506358_79506466_79507564_79509666_79509749_79509793_79510337
98566	chr8	+	9987	38	NIC	ENSMUSG00000056608.15	novel	2632	11	NA	NA	7	1	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	7.26167481441434	76	93	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGATGTCAGCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	91682069	91781137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_91682311_91683010_91683343_91699752_91699865_91703548_91703696_91704107_91704177_91704255_91704312_91705509_91705628_91710089_91710177_91710895_91711034_91712686_91712809_91716057_91716302_91721087_91721265_91723467_91723612_91723704_91723961_91725123_91725335_91728247_91728444_91732341_91732510_91733158_91733339_91735347_91735459_91737239_91737437_91737883_91738084_91741726_91741887_91742462_91742553_91748393_91748498_91749442_91749561_91750164_91750223_91752007_91752051_91753295_91753516_91757109_91757313_91759966_91760873_91761532_91761694_91762953_91763227_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
98567	chr18	+	5439	35	NNC	ENSMUSG00000024421.17	novel	5551	38	NA	NA	6255	115	intron_retention	FALSE	canonical	3	34	junction_5	18.2907364002187	3	81	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTACTGAGAGGTTGTTTG	23	False	NA	NA	False	NA	NA	NA	12643510	12716185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_12643617_12646700_12646782_12649538_12649646_12651793_12651845_12652915_12653068_12657562_12657674_12657782_12657895_12658066_12658235_12658840_12659038_12660605_12660723_12661351_12661507_12661769_12661912_12662562_12662666_12664888_12665271_12667017_12667161_12670743_12670915_12672725_12672878_12673018_12673182_12673591_12673726_12675364_12675510_12680398_12680519_12682248_12682383_12685834_12685953_12686221_12686363_12689683_12689824_12690727_12690860_12694753_12694908_12700722_12700890_12704956_12705141_12707270_12707412_12710808_12710969_12711070_12711202_12713342_12713437_12714749_12714870_12715574
98568	chrM	+	2609	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1027	0	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	98	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	-3	True	NA	22	True	NA	NA	NA	1093	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
98570	chr7	+	2209	7	ISM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	1609	14	-56	-14	intron_retention	FALSE	canonical	3	570	junction_2	59.9594770564995	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTAAGTCCTTAGGAGGT	2262	False	NA	NA	False	NA	NA	NA	4744792	4750499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075
98571	chr4	+	2809	6	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	81.3373223065525	3	68	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033868	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146036265_146036397_146054375_146054480_146058453_146058581_146060726_146061381_146061549
98572	chr11	-	2897	5	NIC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	18970	-7	intron_retention	FALSE	canonical	3	2404	junction_3	192.860701025377	7	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTAATGACGGCTGAAAA	NA	False	NA	NA	False	NA	NA	NA	88827321	88814852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88825498_88826648
98573	chr3	+	4990	16	ISM	ENSMUSG00000033014.13	ENSMUST00000106860.6	5025	19	31505	-800	-55	799	3prime_fragment	FALSE	canonical	3	12	junction_15	27.6320265070966	100	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGATATCCCCATGTT	NA	False	NA	NA	False	NA	NA	NA	103218699	103263678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_103218830_103228860_103228978_103231960_103232076_103233403_103233551_103234107_103234226_103236353_103236629_103237395_103237561_103238925_103239124_103244714_103244848_103246595_103246660_103248875_103249036_103251609_103251960_103253960_103254085_103255636_103255712_103259318_103259472_103261012
98574	chr17	+	2093	5	NNC	ENSMUSG00000071172.14	novel	2594	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	858.014677904755	1	125	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	29251646	29261871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255423_29257463_29257634_29260180_29260268_29260357
98575	chr4	+	2622	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	4	-242	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	219.869847864595	1	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAATATCCTTAAAAG	916	False	NA	NA	False	NA	NA	NA	145237350	145265516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257381_145257490_145261385_145261513_145263160_145263972_145264085
98576	chrM	+	551	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	124	6	124	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAATGACCCACCAAACT	274	False	NA	NA	False	NA	NA	NA	8050	8601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_8000_8600
98577	chr4	+	3307	5	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43235	2578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	84.9308542286017	3	37	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533638	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533956_147536170_147536264_147592042_147592098_147595209_147595337_147597806
98578	chr5	-	4004	30	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	30	-4051	intron_retention	FALSE	non_canonical	0	0	junction_10	57.7490985460165	1	43	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACAGCGCCAGCACACCCC	9640	False	NA	NA	False	NA	NA	NA	135518082	135439439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453778_135455174_135455286_135457353_135457491_135457570_135457681_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461879_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
98579	chrX	-	3760	1	Antisense	novelGene_ENSMUSG00000044150.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCACCAAAAGCAATGAG	NA	False	NA	NA	False	NA	NA	NA	158341645	158337885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_158337900_158341600
98580	chr5	-	2541	10	ISM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	616	-2	603	0	3prime_fragment	FALSE	canonical	3	7	junction_9	5.0868991743376	9	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGGTCATTTTATATA	9596	False	NA	NA	False	NA	NA	NA	122491680	122463568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606
98581	chr3	+	5031	4	Antisense	novelGene_ENSMUSG00000001017.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	38	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCCGCCGGGCCCACCAGT	NA	False	NA	NA	False	NA	NA	NA	90406070	90416773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_90410590_90413414_90413569_90414851_90414934_90416497
98583	chr12	+	3150	1	Intergenic	novelGene_4328	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACCCGCTGGCTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	23071936	23075086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_23071900_23075100
98584	chr3	-	411	1	FSM	ENSMUSG00000094392.2	ENSMUST00000119949.3	136	1	0	-275	0	275	mono-exon	FALSE	NA	NA	NA	NA	NA	13	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	86579475	86579064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_86579100_86579500
98585	chr5	+	2686	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-9	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	335.156139366568	9	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAATCTCAAACTCAAAGTC	NA	False	NA	NA	False	NA	NA	NA	33815481	33829525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829069_33829130_33829325
98586	chr4	+	2633	4	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	3	-235	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	233.962960031426	2	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATCCTTAAAAGAGTATCT	5022	False	NA	NA	False	NA	NA	NA	145241456	145265523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145241496_145257381_145257486_145261385_145261513_145263160
98587	chr9	+	2616	5	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-149	intron_retention	FALSE	non_canonical	0	0	junction_3	8157.08553957846	4	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64080657	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64083490_64084222_64085300_64085504
98588	chr12	+	5350	2	Antisense	novelGene_ENSMUSG00000021056.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	147	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	76269310	76276097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_76272813_76274249
98589	chr11	+	2682	8	NIC	ENSMUSG00000059552.14	novel	1867	11	NA	NA	5	218	intron_retention	FALSE	canonical	3	1895	junction_3	125.562083188731	1	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTACAGAGGAGTCTGGAG	NA	False	NA	NA	False	NA	NA	NA	69471235	69481549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614
98590	chr15	+	1417	13	NNC	ENSMUSG00000056851.15	novel	1499	14	NA	NA	-7	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	181.456816870816	1	67	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAAAGATGGACTGGAG	4797	False	NA	NA	False	NA	NA	NA	102381761	102407305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391596_102391724_102392600_102392676_102394382_102394476_102395522_102395565_102396639_102396727_102398183_102398243_102399068_102399239_102406923
98591	chr18	+	1733	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	15	-1	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	5	66	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181400
98592	chr11	+	4231	2	NNC	ENSMUSG00000040483.16	novel	2582	4	NA	NA	6230	291	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	105	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCCACTAGCTTTCCAGC	NA	False	NA	NA	False	NA	NA	NA	72198720	72203198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72202813_72203059
98593	chr2	+	8238	21	Fusion	ENSMUSG00000098789.8_ENSMUSG00000098488.8	novel	2790	20	NA	NA	-2	-22	intron_retention	FALSE	canonical	2	8	junction_6	35.6747459696632	105	74	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATATTTTTTTAAAAAG	NA	False	NA	141	True	NA	NA	NA	119857982	119873489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_119858058_119860538_119862482_119862594_119865152_119865400_119865538_119865676_119865806_119866065_119866107_119866285_119866329_119866576_119866632_119866869_119867001_119867227_119867312_119867538_119867577_119868218_119868355_119868976_119869114_119869343_119869567_119869697_119869816_119870109_119870248_119870338_119870444_119870623_119870804_119870958_119871126_119871601_119871789_119871875
98594	chr6	-	496	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	-27	-46	-27	46	mono-exon	FALSE	NA	NA	NA	NA	NA	3	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCCTACA	NA	False	NA	NA	False	NA	NA	NA	66852754	66852258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_66852300_66852800
98595	chr2	+	5380	40	NNC	ENSMUSG00000039943.17	novel	5217	37	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_39	33.3631621959906	62	62	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAACATCTACCAGAGTAT	NA	False	NA	NA	False	NA	NA	NA	135583750	135856513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_135583808_135628624_135628798_135647468_135647526_135719302_135719402_135749418_135749500_135750269_135750330_135752020_135752165_135771874_135771955_135774168_135774223_135780179_135780262_135781129_135781231_135781866_135781925_135788965_135789075_135792131_135792343_135793912_135794007_135796265_135796346_135796834_135796920_135799974_135800066_135800561_135800658_135803638_135803740_135808944_135809087_135809836_135809922_135810240_135810366_135812313_135812366_135813677_135813781_135814831_135814997_135818018_135818224_135823952_135824042_135824895_135825047_135829399_135829450_135829756_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135852855_135852893_135854885_135855196_135855241
98596	chr7	-	1482	1	Intergenic	novelGene_2981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTATCAGTGGGAGGGG	NA	False	NA	NA	False	NA	NA	NA	75426048	75424566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_75424600_75426000
98597	chr15	-	2985	15	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	55	1	intron_retention	FALSE	canonical	2	9	junction_4	560.510795650553	2	49	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCCGTGCAGTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	96953782	96894647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96898211_96898347_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
98598	chr1	-	1105	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	16	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGGAGGCGGTGGGCGG	9065	False	NA	NA	False	NA	NA	NA	86458414	86454538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
98599	chr3	+	2779	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	168.284403711528	28	6	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	54600282	54636184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622199_54622598_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629977_54630062_54633390_54633497_54634989_54635118_54635764
98600	chr3	+	2290	11	NNC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	2	-331	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_10	53.7707169377534	6	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGATTTTAAAGTGCATT	6634	False	NA	NA	False	NA	NA	NA	108561266	108584997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582092_108584000
98601	chr9	+	8293	42	FSM	ENSMUSG00000032410.14	ENSMUST00000185633.7	10256	42	0	1963	0	-1963	multi-exon	TRUE	canonical	3	17	junction_40	10.3589359987776	44	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTATTTGCTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	95836819	95937893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_95836997_95846023_95846257_95849764_95849863_95851285_95851396_95851499_95851611_95852781_95852865_95855331_95855420_95855502_95855672_95856448_95856517_95856814_95856953_95859582_95859650_95859849_95859956_95861187_95861278_95863827_95863985_95867236_95867357_95870889_95871060_95873028_95873150_95873241_95873341_95877152_95877257_95880268_95880401_95881466_95881630_95884187_95884302_95885896_95885996_95888049_95888166_95888753_95888901_95893263_95893354_95893576_95893713_95899803_95899861_95900099_95900233_95903858_95903929_95906074_95906274_95908890_95908987_95915637_95915747_95917687_95917750_95920671_95920783_95920931_95921055_95921752_95921898_95927538_95927715_95929835_95929950_95930393_95930497_95933646_95933808_95934565
98602	chr7	-	4496	3	NNC	ENSMUSG00000097415.3	novel	656	3	NA	NA	-22	-6384	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	16	16	86	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTCCCTGCATTGTCAC	NA	False	NA	NA	False	NA	NA	NA	75431869	75425893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_75426544_75426728_75430505_75431799
98603	chr11	-	5559	24	NNC	ENSMUSG00000018733.11	novel	2389	4	NA	NA	-100106	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	13.475315246145	68	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGACTTCTTGAAGTTT	9107	False	NA	NA	False	NA	NA	NA	83293518	83185900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_83187267_83188313_83189034_83189141_83189380_83189537_83189886_83199039_83199100_83207244_83207350_83212762_83212899_83215334_83215582_83223810_83224001_83226204_83226427_83227165_83227287_83227589_83227686_83230136_83230252_83232096_83232264_83233423_83233523_83237471_83237732_83241802_83241997_83256471_83256619_83258707_83258852_83260475_83260603_83280521_83280612_83281518_83281610_83288582_83288734_83293393
98604	chr17	-	1623	9	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-5	intron_retention	FALSE	non_canonical	0	0	junction_3	3544.40452509304	654	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45884199	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45879808_45881327_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
98605	chr14	-	3114	21	NIC	ENSMUSG00000040701.17	novel	2673	22	NA	NA	7	-1	intron_retention	FALSE	canonical	3	99	junction_4	13.1273569312333	28	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGAGTTTTGATGGCTG	NA	False	NA	NA	False	NA	NA	NA	55343998	55336032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
98606	chr2	+	3353	6	NNC	ENSMUSG00000027439.10	novel	4232	6	NA	NA	-30	-1023	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	31.2051277837473	12	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATTTTCACAGGGGAAGA	529	False	NA	NA	False	NA	NA	NA	148523100	148533846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_148523136_148525513_148527191_148528433_148528529_148529923_148530092_148531995_148532154_148532626
98607	chr1	+	6092	12	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	-6	intron_retention	FALSE	canonical	3	306	junction_2	496.249953681535	20	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGGCAGTTTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59743368_59743782_59743910_59744751_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
98608	chr1	-	785	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	0	-2	0	2	mono-exon	FALSE	NA	NA	NA	NA	NA	12	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCCTTAGTATAATTAATA	NA	False	NA	NA	False	NA	NA	NA	24653052	24652267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24652300_24653100
98609	chr9	+	4887	16	NNC	ENSMUSG00000032536.13	novel	5363	18	NA	NA	-2966	1	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_14	50.6896439127363	128	24	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTTTTTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	121193067	121303985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_121193366_121220922_121221118_121260544_121260622_121269735_121269853_121271757_121271859_121272691_121272801_121274880_121274960_121275755_121275887_121277173_121277249_121277887_121278020_121280716_121280794_121282273_121282511_121283344_121283662_121289424_121289581_121298050_121298154_121301302
98612	chr13	+	3436	7	NNC	ENSMUSG00000074867.5	novel	1560	5	NA	NA	0	5310	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	21.0350237038664	16	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTTTCTTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	62277729	62389268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62351245_62351373_62351567_62351629_62381070_62381198_62381382_62381444_62382774_62385626_62389172
98613	chr4	+	2808	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	1	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	204.063715540024	16	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGATTGTTTCCAA	913	False	NA	NA	False	NA	NA	NA	145237347	145265757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160_145264550_145264717
98614	chr17	-	2126	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	66	32	4	-13	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	143	108	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAGAAAAAAAATTGACTG	NA	False	NA	NA	False	NA	NA	NA	26309245	26300216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
98615	chr17	-	342	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCATGCACCACCACCCAC	NA	False	NA	NA	False	NA	NA	NA	40158929	40158587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40158600_40158900
98617	chr2	-	4382	8	Fusion	ENSMUSG00000078867.10_ENSMUSG00000083817.2	novel	2135	3	NA	NA	-20	2015	multi-exon	FALSE	non_canonical	0	0	junction_1	116.769439669874	5	97	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAACTTGCTTCCTGGTC	NA	False	NA	NA	False	NA	NA	NA	177090133	176915250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_176918442_176918525_176918892_176918973_176919213_176920366_176920428_176920629_176920757_176925294_176925521_177086489_177086545_177090016
98618	chr8	-	5902	23	ISM	ENSMUSG00000031561.17	ENSMUST00000190840.8	8663	27	257438	8165	-117147	-8165	internal_fragment	FALSE	canonical	3	50	junction_4	12.5934523194521	33	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAACAGTTTACCTAAAC	NA	False	NA	NA	False	NA	NA	NA	48870281	48689125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_48689937_48693279_48693577_48707444_48707681_48709866_48710043_48729064_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753789_48754007_48763657_48763805_48788623_48788810_48793988_48794190_48795291_48795487_48795649_48795752_48796266_48796478_48802233_48802449_48820345_48820469_48848470_48848710_48870042
98620	chr18	-	3053	22	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-208	-41	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	50.4508022405196	1	81	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGTGTCCTTGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	34140227	33930010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33943291_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
98621	chr15	-	2495	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	34	junction_1	0	3	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	1777	False	NA	NA	False	NA	NA	NA	22703232	22699885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700670_22701521
98622	chr13	+	1890	7	NNC	ENSMUSG00000113008.2	novel	327	2	NA	NA	-10252	-585	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.2842847839928	2	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCACGATAGTTTCCAAAG	NA	False	NA	NA	False	NA	NA	NA	65651748	65662207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_65651859_65658192_65658320_65658519_65658581_65659713_65660290_65660709_65661130_65661194_65661699_65662115
98623	chr10	-	2586	11	NIC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-4	-149	intron_retention	FALSE	canonical	3	1501	junction_10	185.395927679116	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGGCCAGCCAGCGATT	NA	False	NA	NA	False	NA	NA	NA	127358259	127353156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356985_127358156
98624	chr17	+	6417	17	ISM	ENSMUSG00000069729.15	ENSMUST00000232180.2	7309	20	131973	-1014	86334	1014	3prime_fragment	FALSE	canonical	3	53	junction_2	8.75870103097485	86	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCACTGTGATGGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	5177186	5394794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_5177300_5293102_5293347_5314306_5314397_5329477_5329658_5341230_5341559_5356023_5356170_5362109_5362220_5364148_5364308_5368915_5369126_5371547_5371753_5377550_5377690_5377923_5378097_5382761_5382913_5385238_5385336_5386799_5387584_5389490_5389622_5391637
98625	chr5	+	937	6	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	12	-1158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5882.02378777917	10	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTGAATCATCCCTTGC	487	False	NA	NA	False	NA	NA	NA	129097277	129100229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097813_129099057_129099255_129099438_129099610_129099837
98626	chr15	-	5040	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	117	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9841	False	NA	NA	False	NA	NA	NA	22705049	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700356_22700444_22704579_22704680
98627	chr4	+	3801	10	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-16	182228	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	152.008852893589	1	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATAAAGTATTTGCTGAAG	NA	False	NA	NA	False	NA	NA	NA	146586467	146806080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146797295_146797381_146800390_146800518_146802050_146802589_146802674_146803365_146803449_146803763_146804015_146804243_146804573
98629	chr13	-	2314	10	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	71	-4	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2186.3767479441	3	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTTATGACGTGTGCC	NA	False	NA	NA	False	NA	NA	NA	58544689	58539056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640
98630	chr4	+	2152	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	12	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	34	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206912	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146209452_146209546_146293441_146293491_146388486_146388538_146391672_146392386_146392722_146393429_146552609
98631	chr7	-	1585	9	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-13	0	intron_retention	FALSE	non_canonical	0	0	junction_8	6725.38012750023	6	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396959_126398079
98632	chr12	+	2494	5	ISM	ENSMUSG00000021096.12	ENSMUST00000021514.10	7668	6	22939	4286	447	969	3prime_fragment	FALSE	canonical	3	299	junction_2	42.9498253779919	1	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATAGAGTTGGGAGTAT	NA	False	NA	NA	False	NA	NA	NA	72830923	72842307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_+_72831311_72833445_72833564_72837406_72837516_72839551_72839610_72840485
98633	chr17	-	902	2	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	766	1	intron_retention	FALSE	canonical	3	10930	junction_1	0	2193	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	-83	True	NA	NA	NA	45879896	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45879489_45879783
98634	chr2	+	4047	6	NNC	ENSMUSG00000094786.2	novel	701	4	NA	NA	21	2642	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	82.6254198173903	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATGAAGAAGTAAAATT	NA	False	NA	NA	False	NA	NA	NA	177190028	177204198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177198701_177198829_177200246_177200570_177200654_177201191_177201274
98635	chr17	+	2040	9	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTCGGAAGAGAAGGCGG	7835	False	NA	NA	False	NA	NA	NA	32529568	32539718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32529645_32529925_32530068_32531258_32531350_32533086_32533118_32534415_32534463_32534628_32535637_32536035_32536344_32537733_32537786_32539433
98636	chr1	-	3316	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-23	6	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	635.613553854659	53	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATGTGTGTGAGGG	NA	False	NA	NA	False	NA	NA	NA	20890507	20873185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20874187_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
98637	chr9	-	5032	29	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	42	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCACTCCGGGAGCGC	6404	False	NA	NA	False	NA	NA	NA	72656911	72569737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569895_72577232_72577399_72578511_72578584_72584594_72584674_72584772_72584813_72593341_72593395_72616391_72616444_72617758_72617820_72619446_72619547_72625497_72625667_72628582_72628699_72628776_72628944_72632298_72632364_72633691_72633811_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648968_72649932_72650041_72650819_72650917_72653686_72653759_72654404_72655772_72655833
98638	chr3	+	3183	13	ISM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	70	140	20	-32	intron_retention	FALSE	canonical	3	105	junction_1	23.8449854966056	1	149	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTCGCCTACAATAAAGG	3357	False	NA	NA	False	NA	NA	NA	96604468	96613246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664
98639	chr2	-	4867	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	30	-381	30	381	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	2	186	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGGTTGGATCTCCACAA	NA	False	NA	NA	False	NA	NA	NA	175017634	175007666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
98640	chr9	+	3638	5	ISM	ENSMUSG00000032024.11	ENSMUST00000034522.8	4154	7	85099	4	-2983	-4	3prime_fragment	FALSE	canonical	2	4	junction_1	2.69258240356725	32	72	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGACATTTGTAAAATAGTA	NA	False	NA	NA	False	NA	NA	NA	40682406	40696611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_40682603_40683656_40683825_40685658_40685782_40692408_40692551_40693602
98641	chr9	+	3062	1	Intergenic	novelGene_983	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	62	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTGTATGACCATGGGC	NA	False	NA	NA	False	NA	NA	NA	5065034	5068096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_5065000_5068100
98642	chr12	+	2023	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	51	119	51	-119	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	2	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGCCTTTGTACCTTT	NA	False	NA	NA	False	NA	NA	NA	24758290	24764026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
98643	chr8	-	1886	8	NNC	ENSMUSG00000001995.10	novel	6365	21	NA	NA	1497	-45909	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	74.5738915849404	1	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACACCAGATATTGACTGTG	NA	False	NA	NA	False	NA	NA	NA	126217952	126190723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_126191166_126194913_126195491_126196486_126196645_126200236_126200341_126201562_126201738_126206888_126207082_126208786_126208921_126217849
98644	chrUn_MU069435v1	-	524	1	Intergenic	novelGene_4734	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	159	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	524	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_500
98645	chr2	+	6972	20	NIC	ENSMUSG00000039262.17	novel	10671	32	NA	NA	-2357	-22	combination_of_known_junctions	FALSE	canonical	3	239	junction_18	86.6688862561147	1	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGTATAAAAAAATAAAG	8540	False	NA	NA	False	NA	NA	NA	32094037	32124512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_32094337_32096347_32096593_32098651_32098848_32102086_32102304_32106057_32106246_32106623_32106770_32107208_32107348_32108688_32108772_32109228_32109418_32109551_32109750_32110101_32110189_32111091_32111197_32111356_32111550_32112301_32112400_32113430_32113559_32113940_32114182_32116242_32116399_32116956_32117049_32119274_32119357_32120622
98646	chr14	-	6533	6	NNC	ENSMUSG00000022016.18	novel	760	6	NA	NA	-2138	-2	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_4	9.98799279134702	84	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCATGGTTTTCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	78749702	78729687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_78733387_78736274_78736436_78739629_78739677_78740378_78740466_78745164_78745321_78747319
98648	chr17	+	1084	2	Intergenic	novelGene_87	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	32	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095194	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
98649	chr17	-	3649	8	NIC	ENSMUSG00000055660.10	novel	2560	8	NA	NA	-4	1136	combination_of_known_junctions	FALSE	canonical	3	30	junction_6	35.9500787657733	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCTCATTTCCCAACTAAT	NA	False	NA	NA	False	NA	NA	NA	95057451	95033376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056864
98650	chr5	+	934	5	ISM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	440	1158	440	-1158	3prime_fragment	FALSE	canonical	3	14794	junction_3	249.215142998976	1	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTGAATCATCCCTTGC	985	False	NA	NA	False	NA	NA	NA	129097775	129100229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
98651	chr11	+	1771	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-48	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1514.39680185524	1	67	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5358	False	NA	NA	False	NA	NA	NA	52251913	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52274642_52274915_52276420_52276561_52278242_52278301_52279258
98652	chr4	-	1589	6	ISM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	46722	12	-2515	-12	3prime_fragment	FALSE	canonical	3	1473	junction_1	83.0262609058122	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAGGCCAGAGCTGA	NA	False	NA	NA	False	NA	NA	NA	137476973	137469055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859
98653	chr11	-	1169	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	5	-172	5	172	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCACCCAAAAAAAAAAAAAA	4466	False	NA	NA	False	NA	NA	NA	20286008	20284839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286000
98654	chrX	-	833	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	-44	-39	-44	39	mono-exon	FALSE	NA	NA	NA	NA	NA	89	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGGCTTTCATTAATAG	NA	False	NA	NA	False	NA	NA	NA	68649895	68649062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_68649100_68649900
98655	chr18	+	6491	9	Antisense	novelGene_ENSMUSG00000094306.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGCTCCAGGGCCCGCGG	NA	False	NA	NA	False	NA	NA	NA	14758685	14815823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_14760368_14766598_14766732_14769550_14773418_14774011_14774180_14784075_14784301_14788082_14788238_14803365_14803440_14812433_14812521_14815723
98656	chr17	-	3366	16	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	76	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCCCGCGAAAACTCAGG	NA	False	NA	NA	False	NA	NA	NA	56630473	56610406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56610560_56612083_56612249_56616334_56616578_56617673_56617837_56619053_56619279_56620062_56620251_56622190_56622306_56622391_56622505_56622774_56622879_56624001_56624113_56624991_56625149_56625244_56625382_56627158_56627287_56627403_56627542_56629019_56629124_56629351
98658	chr4	+	3362	1	Intergenic	novelGene_2006	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	55	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAACCACAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	143702113	143705475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_143702100_143705500
98659	chr13	-	2603	13	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	21	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	2137.00922078549	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACGTGTGCCCAATTTG	4824	False	NA	NA	False	NA	NA	NA	58550257	58539049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541683_58542247_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
98661	chr17	-	2186	1	Genic_Genomic	ENSMUSG00000024165.10	novel	NA	NA	NA	NA	16298	317	mono-exon	FALSE	NA	NA	NA	NA	NA	51	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTGTGTGTATTTTG	NA	False	NA	NA	False	NA	NA	NA	25163312	25161126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_25161100_25163300
98662	chr18	-	2452	14	NNC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-3	-5	intron_retention	FALSE	non_canonical	0	0	junction_6	53.2694390443026	18	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACCTCTAGATGT	2798	False	NA	NA	False	NA	NA	NA	34884580	34866054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34866447_34866629_34866742_34867771_34868523_34871268_34871332_34873380_34873483_34876990_34877121_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
98663	chr11	-	4083	10	NIC	ENSMUSG00000040481.18	novel	11488	28	NA	NA	-3237	478	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	23.2941469891176	111	20	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCGCTGTGATTACCTGT	NA	False	NA	NA	False	NA	NA	NA	106946953	106925744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_106927417_106931051_106931239_106933500_106933586_106934458_106934652_106935317_106935492_106937825_106938170_106943614_106943841_106944048_106944132_106945281_106946145_106946697
98664	chr7	+	1976	8	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	234.04848616804	1	64	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	626	False	NA	NA	False	NA	NA	NA	4743156	4750513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743239_4744778_4744968_4745666_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
98665	chr19	+	4968	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	483	4	81	-4	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	2	156	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTCTCGTGGTGTTTT	1550	False	NA	NA	False	NA	NA	NA	44282595	44295299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
98666	chr16	+	1715	10	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	602.191020101893	2	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22930293_22930343_22930566_22930647_22931916
98667	chr17	+	1478	12	Antisense	novelGene_ENSMUSG00000116868.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	15	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGCTGTCCTAAAAGCTAC	8207	False	NA	NA	False	NA	NA	NA	6791071	6861908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_6791229_6792931_6793077_6795965_6796111_6803306_6803475_6809623_6809760_6812795_6812920_6815628_6815703_6817277_6817357_6819122_6819158_6831825_6831892_6841677_6841899_6861780
98668	chrM	-	2399	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-75	-1805	-75	1805	mono-exon	FALSE	NA	NA	NA	NA	NA	1	92	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTACTTTTATTTGGAT	16	True	NA	-6	True	NA	NA	NA	14145	11746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11700_14100
98669	chr2	+	3813	19	NNC	ENSMUSG00000033059.8	novel	3909	20	NA	NA	27	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	37.6855491837913	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGGTCACTGTGGTATC	NA	False	NA	NA	False	NA	NA	NA	150628681	150673668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716_150650821_150653173_150653306_150655310_150655423_150655840_150655924_150656905_150657050_150657537_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662807_150668252_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
98670	chr17	-	2452	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	-11	intron_retention	FALSE	canonical	0	0	junction_6	3303.74860423731	2	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTATACAGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	45884195	45878711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881438_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
98671	chrM	-	2311	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-75	-1717	-75	1717	mono-exon	FALSE	NA	NA	NA	NA	NA	339	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGTGTTTAATTAGGT	16	True	NA	-6	True	NA	NA	NA	14145	11834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11800_14100
98672	chr14	+	890	11	ISM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	49	6203	1	2611	5prime_fragment	FALSE	canonical	3	1632	junction_5	103.390328367793	19	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGATTAGATAGAAAAATACG	NA	False	NA	NA	False	NA	NA	NA	45567293	45580959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857
98673	chr2	-	1031	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	42	-73	-42	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGGTGGTGGACCTCATG	NA	False	NA	NA	False	NA	NA	NA	28824694	28823663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823700_28824700
98674	chr4	+	2421	4	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	26.6374840320094	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147394998	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147415724_147416047_147416344
98675	chr11	+	2382	10	NNC	ENSMUSG00000037243.18	novel	1860	12	NA	NA	17	-36	intron_retention	FALSE	canonical	0	0	junction_5	49.3380878589781	3	57	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAAAGAAATAATAAATGGT	7690	False	NA	NA	False	NA	NA	NA	58197911	58205403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_58198083_58198337_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201094_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
98676	chr9	-	725	4	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	56	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5151.32722919271	3	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTAATGAGAAATCTGTGT	7156	False	NA	NA	False	NA	NA	NA	78388950	78385747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386083_78387520_78387703_78387792_78387971_78388920
98677	chr6	+	2272	19	Antisense	novelGene_ENSMUSG00000080465.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.229061423645426	1	38	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGCGGAGCACGTCGGGAA	NA	False	NA	NA	False	NA	NA	NA	71857670	71885734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_71858218_71858490_71858651_71859173_71859216_71860430_71860577_71861523_71861610_71862292_71862387_71862483_71862563_71865550_71865665_71866571_71866671_71870365_71870515_71871273_71871359_71871805_71871844_71875343_71875442_71878181_71878304_71879839_71879945_71880409_71880481_71882082_71882138_71884765_71884831_71885617
98678	chr11	+	1870	4	Antisense	novelGene_ENSMUSG00000020368.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	36	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCACATCTGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	50185302	50188162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_50185810_50185935_50187169_50187895_50187966_50188102
98679	chr1	-	2489	1	ISM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	101776	14	7995	-14	mono-exon	FALSE	NA	NA	NA	NA	NA	19	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTCTTCTTACAGCTGT	NA	False	NA	NA	False	NA	NA	NA	36181610	36179121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_36179100_36181600
98680	chr1	-	4524	18	Antisense	novelGene_ENSMUSG00000026187.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTTCCGGGCGGAAACC	NA	False	NA	NA	False	NA	NA	NA	72433070	72346682	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_72346725_72349591_72349706_72351564_72351749_72353307_72353362_72354617_72354741_72358157_72358348_72364230_72364347_72365373_72365512_72373792_72373856_72378116_72378255_72379145_72379237_72382165_72382300_72385384_72385584_72393401_72396044_72420775_72420885_72422510_72422613_72422859_72422927_72433052
98682	chr1	-	2382	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	44	5776	8	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	1	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAGACTTAATACTTCCT	NA	False	NA	NA	False	NA	NA	NA	86287078	86278216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
98683	chr1	-	3767	3	NNC	ENSMUSG00000009905.6	novel	5518	10	NA	NA	25053	-10252	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	19	114	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGTAAATAAATATACATT	1911	False	NA	NA	False	NA	NA	NA	106662360	106658440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_106658731_106658812_106659337_106659407
98684	chr1	+	1535	5	Antisense	novelGene_ENSMUSG00000037138.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	15	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATCTCACTTGTTTGAT	NA	False	NA	NA	False	NA	NA	NA	38548610	38558037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_38548687_38554989_38555069_38555226_38555342_38556233_38556309_38556847
98685	chrX	-	2787	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	51	10	-6	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921358	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
98686	chr17	-	1380	1	Antisense	novelGene_ENSMUSG00000023067.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	57	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGAGAGAGAACAGATGT	NA	False	NA	NA	False	NA	NA	NA	29319696	29318316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29318300_29319700
98687	chr13	+	926	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-17	29	-17	-29	mono-exon	FALSE	NA	NA	NA	NA	NA	225	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAAAAACAAA	7945	False	NA	NA	False	NA	NA	NA	74554510	74555436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
98688	chr17	+	1093	1	ISM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	5861	0	1730	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	NA	False	NA	132	True	NA	NA	NA	29318603	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29318600_29319700
98690	chr17	-	1190	5	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	3692	21	157	-21	3prime_fragment	FALSE	canonical	3	9221	junction_4	1200.01427074848	1	24	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGATGCAGTTTTATA	NA	False	NA	NA	False	NA	NA	NA	45880505	45878721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395
98691	SIRV6	+	1322	10	NNC	SIRV6A	novel	1528	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	9204.41124920244	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1128	11825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1163_1466_1511_1640_1736_1845_1990_2470_2609_2737_2829_3106_3165_10724_10763_11048_11109_11205
98692	chr9	-	1280	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	560	53	-97	5prime_fragment	FALSE	canonical	3	9075	junction_6	2020.6003577045	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGCAAGCCCATGTGT	7153	False	NA	NA	False	NA	NA	NA	78388953	78386290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
98693	chr17	+	5176	1	Intergenic	novelGene_241	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	67	58	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	40489666	40494842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40489700_40494800
98694	chr17	-	3052	14	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	130	20	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGGCTGCTGCGGGAGA	NA	False	NA	NA	False	NA	NA	NA	56630480	56610370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56610560_56612083_56612249_56616334_56616578_56617673_56617837_56619053_56619279_56619870_56619966_56620062_56620251_56622190_56622314_56622396_56622505_56622774_56622881_56624002_56624113_56624991_56625149_56625244_56625326_56629381
98695	chr4	-	4548	3	Intergenic	novelGene_2189	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAGAGTTACCCTTCACT	NA	False	NA	NA	False	NA	NA	NA	156516534	156509520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_156510518_156510615_156510725_156513092
98696	chr17	+	3105	4	ISM	ENSMUSG00000039601.17	ENSMUST00000044895.13	3226	5	32276	0	32276	0	3prime_fragment	FALSE	canonical	2	10	junction_1	4.18993502999218	7	15	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTGTGGCATCATTTC	NA	False	NA	NA	False	NA	NA	NA	44147169	44350403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_44147389_44328657_44328832_44331843_44332016_44347863
98697	chr1	+	2116	12	Antisense	novelGene_ENSMUSG00000064823.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1047	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAGCAAACAAATCATA	NA	False	NA	NA	False	NA	NA	NA	86278215	86285175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_86278416_86278530_86278756_86279086_86279216_86279919_86280039_86280228_86280354_86280845_86281002_86281452_86281578_86282741_86282866_86283772_86283915_86284091_86284180_86284277_86284464_86284678
98698	chr15	+	1986	3	FSM	ENSMUSG00000003970.10	ENSMUST00000229591.2	824	3	-199	-963	2	0	multi-exon	FALSE	canonical	3	10804	junction_2	326	4	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	NA	False	NA	NA	NA	76788303	76790514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_76788651_76788738_76788881_76789017
98700	chr7	-	4085	1	Intergenic	novelGene_2899	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	86	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAATACTAAAAGAGATTGG	NA	False	NA	-44	True	NA	NA	NA	26410590	26406505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_26406500_26410600
98701	chr5	-	6753	14	NNC	ENSMUSG00000029202.13	novel	8934	33	NA	NA	1016	-15	intron_retention	FALSE	canonical	0	0	junction_3	214.703318076129	11	66	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATTATGTAGAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	65795243	65765127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_65767539_65772606_65772948_65776286_65776396_65776962_65777109_65777892_65780443_65781262_65781396_65784427_65784543_65784902_65785108_65785341_65785437_65787261_65787399_65789055_65789125_65791514_65791674_65792657_65792782_65795084
98702	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	286	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
98703	chr14	-	2163	1	Intergenic	novelGene_553	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCCTGTCCCTGACTTT	NA	False	NA	NA	False	NA	NA	NA	43172659	43170496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_43170500_43172700
98704	chrUn_MU069435v1	+	482	1	Intergenic	novelGene_4725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	148	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACCATTCGTAGACGACC	NA	False	NA	NA	False	NA	NA	NA	0	482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_500
98705	chr18	+	5034	22	Antisense	novelGene_ENSMUSG00000042211.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	66	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGAAGAAGTGTCATCGAG	NA	False	NA	NA	False	NA	NA	NA	62637225	62681831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_62638658_62639006_62639113_62639674_62639818_62640901_62641068_62643772_62643882_62644082_62644186_62647865_62648616_62650034_62650214_62651561_62651683_62652824_62653038_62653752_62653899_62655422_62655591_62659201_62659332_62660245_62660340_62662620_62662758_62663753_62663892_62666571_62666742_62666964_62667135_62669185_62669325_62673954_62674116_62677887_62677998_62681682
98706	chrM	+	1669	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-291	0	-291	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-2	True	NA	NA	False	NA	NA	NA	9875	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
98707	chrUn_JH584304v1	-	3194	4	Intergenic	novelGene_4602	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	381.907784099193	8	9	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATCTTCTGTCTTCCCCAG	NA	False	NA	NA	False	NA	NA	NA	59695	52186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55249_58563_58836_59591
98708	chrM	+	907	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	47	1	47	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	159	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	4	False	NA	22	True	NA	NA	NA	116	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_100_1000
98709	chr2	+	1777	12	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	3398.17188334556	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTTGGTTTTTGTGC	7481	False	NA	NA	False	NA	NA	NA	75489610	75496463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741_75495833_75495917
98711	chrM	+	1068	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	514	0	-514	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTATGGAGCTTAAATTA	-3	True	NA	22	True	NA	NA	NA	1093	2161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2200
98712	chr5	+	2648	15	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	329.496152156158	11	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815476	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818686_33818729_33818864_33818990_33821164_33821247_33821481_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
98714	chr2	+	4406	11	FSM	ENSMUSG00000039086.10	ENSMUST00000041126.9	4343	11	247	-310	247	310	multi-exon	FALSE	canonical	3	19	junction_4	6.29603049547888	43	24	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGACCACGGGATTCGG	NA	False	NA	NA	False	NA	NA	NA	179684548	179712304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_179684662_179694256_179694334_179695101_179695187_179696811_179696957_179697493_179697692_179699377_179699543_179699880_179699983_179701128_179701222_179703702_179703823_179705063_179705192_179709124
98715	chr11	+	1455	6	FSM	ENSMUSG00000020149.18	ENSMUST00000020358.12	2827	6	-29	1401	-29	-9	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATCAAACTGTATGGTGA	NA	False	NA	NA	False	NA	NA	NA	20151402	20175455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
98716	chr7	+	2058	1	ISM	ENSMUSG00000109511.2	ENSMUST00000208626.2	2708	2	12661	3	10312	2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACTTGCTGTGAGTAT	-2	True	NA	NA	False	NA	NA	NA	44478172	44480230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_44478200_44480200
98718	chr15	+	3991	10	NIC	ENSMUSG00000022407.11	novel	1932	11	NA	NA	-3	17	intron_retention	FALSE	canonical	3	18	junction_3	335.782373672496	5	113	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACATTAAGTTCTCTTG	NA	False	NA	NA	False	NA	NA	NA	80832734	80853337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_80832902_80836397_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80850384_80851312_80851403_80851789_80851967_80852862
98719	chr11	-	1770	7	NNC	ENSMUSG00000062825.16	novel	1189	7	NA	NA	5	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2433.92299362344	2	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAAAGTGCTGCAGTA	NA	False	NA	NA	False	NA	NA	NA	120239290	120236540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120236720_120236798_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
98720	chr5	+	4438	2	Intergenic	novelGene_896	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGCACTTATAATAAAACAA	3189	False	NA	NA	False	NA	NA	NA	145267109	145273962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_145268098_145270512
98721	chr7	-	1957	10	Fusion	ENSMUSG00000114515.3_ENSMUSG00000030695.17	novel	1460	9	NA	NA	-358	-18	multi-exon	FALSE	canonical	3	38	junction_9	8373.29644512988	5	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACTATTTAAGGGGGA	NA	False	NA	NA	False	NA	NA	NA	126400281	126394425	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459_126399531_126399676
98722	chrM	+	456	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	1582	-214	1582	214	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCACCCCCAATACTAAAA	-1	True	NA	-27	True	NA	NA	NA	13323	13779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_13300_13800
98723	chr16	+	1982	9	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	685.21547705813	1	82	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927373_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930343_22930566_22930647_22931916
98724	chr11	+	2396	8	NNC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	5	785	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	141.510077523886	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAATTGAAAACTATTGAT	8499	False	NA	NA	False	NA	NA	NA	74661660	74709505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664480_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
98725	chr19	+	762	4	NNC	ENSMUSG00000024661.8	novel	929	4	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2724.49448929929	6	2	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4924	False	NA	NA	False	NA	NA	NA	9960064	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9960348_9961544_9961663_9962001_9962050_9962144
98726	chr7	+	1346	9	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2340	-18046	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	35	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGGGAGGCGGGGCCCCG	NA	False	NA	NA	False	NA	NA	NA	126394499	126398355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505_126396720_126396814_126396953_126398220
98728	chr6	-	10050	18	Antisense	novelGene_ENSMUSG00000107688.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	113	55	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGGGGCCGCTTCGGCGC	NA	False	NA	NA	False	NA	NA	NA	86980191	86826542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_86826635_86826815_86827196_86901993_86902113_86912409_86912519_86913921_86914065_86921336_86921467_86923089_86923167_86923841_86923976_86926523_86926626_86927760_86927841_86932083_86932239_86933238_86933551_86936009_86936256_86940973_86941208_86942458_86942615_86944248_86944353_86959518_86959624_86972819
98729	chr16	-	2925	6	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-462	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	469.825329244816	3	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTGGCCAAATCAGTTCA	8675	False	NA	NA	False	NA	NA	NA	33787373	33775625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782538_33784118_33784296_33787195
98731	chr13	-	5927	4	Intergenic	novelGene_1407	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	100	51	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGTTGTCTTTTGACAA	NA	False	NA	NA	False	NA	NA	NA	63591506	63570907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_63571753_63572238_63572865_63573010_63573533_63587572
98732	chr9	+	1667	10	NNC	ENSMUSG00000032399.9	novel	596	4	NA	NA	181	-153	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	6157.49403291892	92	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAACCCTTGTGTGACTC	NA	False	NA	NA	False	NA	NA	NA	64080855	64085795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64081197_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
98733	chr16	+	1883	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	11	0	6	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	1	67	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCACTTTATATAGGTGG	6053	False	NA	NA	False	NA	NA	NA	22926507	22932686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
98734	chr9	-	1153	8	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATTGGGAAGAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	64085793	64082473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082581_64082863_64083007_64083375_64083496_64084220_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
98736	chr15	-	4903	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	62	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGACCGTTTTCTCGTTGGT	9381	False	NA	NA	False	NA	NA	NA	22704864	22699820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22701052_22701099_22704588_22704680
98737	chr14	+	1081	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-182	701	multi-exon	TRUE	non_canonical	0	0	junction_1	0	14	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATATTTTACAGTGTT	NA	False	NA	NA	False	NA	NA	NA	13669255	13670474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669509_13669646
98738	chr19	-	6741	4	NIC	ENSMUSG00000096370.9	novel	2432	3	NA	NA	0	-802	intron_retention	FALSE	canonical	3	27	junction_2	167.094783481312	19	130	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCCCCCAATGAAAGTCTT	7796	False	NA	NA	False	NA	NA	NA	4861631	4838198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4842849_4843843_4844038_4852578_4854044_4861199
98739	chr4	+	5516	25	Antisense	novelGene_ENSMUSG00000003810.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	112	136	14	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCTTGCGGTTACTTGTC	NA	False	NA	NA	False	NA	NA	NA	116163383	116210235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_116165535_116165843_116166040_116166121_116166255_116166693_116166824_116167012_116167240_116167653_116167851_116167946_116168222_116168412_116168568_116168878_116168986_116169124_116169245_116169484_116169595_116170049_116170220_116170892_116171025_116172004_116172142_116173016_116173228_116173657_116173745_116174172_116174236_116174905_116175041_116176958_116177057_116179459_116179670_116183268_116183346_116184805_116184961_116187589_116187669_116194599_116194697_116210171
98740	chr4	+	3721	4	Genic_Genomic	ENSMUSG00000081460.2	novel	632	1	NA	NA	40	55830	multi-exon	FALSE	canonical	0	0	junction_1	38.4389848403357	18	75	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATTATGTCCATCCGCTA	NA	False	NA	NA	False	NA	NA	NA	146200168	146256590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146250678_146250737_146251579_146251707_146253158
98741	chr16	-	585	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	6000	False	NA	NA	False	NA	NA	NA	57225471	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
98742	chr1	-	1646	3	Intergenic	novelGene_347	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	14	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTGATGCTACTCAGA	NA	False	NA	NA	False	NA	NA	NA	18014823	18008479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_18008825_18009064_18010196_18014653
98743	chr2	+	2431	4	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	8	-2	intron_retention	FALSE	canonical	3	85	junction_1	35.2167889254858	29	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACACTTGTTCTCATGTT	NA	False	NA	130	True	NA	NA	NA	119857971	119863073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_119858058_119860538_119860693_119860769_119862482_119862594
98744	chr4	+	2694	4	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4301	-43	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	100.40916292849	2	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	146038215	146063148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038260_146054375_146054477_146058453_146058581_146060726
98745	chr10	-	6119	4	Intergenic	novelGene_3436	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	43	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAAATGTACCTCTTAATG	NA	False	NA	NA	False	NA	NA	NA	50009780	49740774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_49741594_49836879_49837834_49987291_49991243_50009385
98746	chr5	+	1174	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	17	-189	17	189	mono-exon	FALSE	NA	NA	NA	NA	NA	11	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	96009589	96010763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009600_96010800
98747	chr17	-	422	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCAGTTTCACTGTACCGG	NA	False	NA	NA	False	NA	NA	NA	40157756	40157334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40157300_40157800
98748	chr3	+	7308	11	FSM	ENSMUSG00000042035.12	ENSMUST00000043983.11	7371	11	65	-2	65	2	multi-exon	FALSE	canonical	2	14	junction_5	19.1627242322171	119	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGCCACATGCTGAAAT	317	False	NA	NA	False	NA	NA	NA	101284463	101370377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_101284519_101285121_101285809_101332766_101333145_101334345_101334757_101338519_101338910_101342646_101343049_101346690_101347096_101358199_101358611_101362420_101362829_101364938_101365425_101367102
98749	chr11	+	2159	15	Antisense	novelGene_ENSMUSG00000018651.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	82	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGCCCGCCGCTGCGCG	5092	False	NA	NA	False	NA	NA	NA	83969540	84020388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_83970606_83972866_83972937_83975538_83975584_83976464_83976596_83977934_83978007_83981373_83981486_83982801_83982845_83984408_83984474_83993878_83993954_83995019_83995105_84000777_84000872_84009073_84009136_84011909_84012015_84017813_84017922_84020361
98750	chr14	+	2063	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	15	-21	at_least_one_novel_splicesite	FALSE	canonical	1	49	junction_2	563.588019408949	2	55	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGTTTTGAGAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	30271102	30295560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281736_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
98751	chr2	+	1677	13	NNC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	-1053	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	560.650137241479	191	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	7494	False	NA	NA	False	NA	NA	NA	61540984	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_61541207_61542123_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
98752	chr15	+	1410	13	NIC	ENSMUSG00000056851.15	novel	1086	14	NA	NA	0	8	combination_of_known_junctions	FALSE	canonical	3	171	junction_10	138.176492412984	2	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTTCTTTGTGAATAGA	4751	False	NA	NA	False	NA	NA	NA	102381715	102407324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
98754	chrX	+	6153	3	Antisense	novelGene_ENSMUSG00000096235.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	126	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCTAAACGTAATATCTT	NA	False	NA	NA	False	NA	NA	NA	17647717	17922058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_17653355_17918616_17918893_17921818
98756	chr15	-	3940	27	NNC	ENSMUSG00000022568.18	novel	5599	38	NA	NA	-2252	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	112.122608290839	92	75	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCTCTTGTCCTTTTG	NA	False	NA	NA	False	NA	NA	NA	75936820	75919013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_75919387_75919469_75919522_75919963_75920002_75920070_75920214_75920290_75920477_75920558_75920707_75920782_75920943_75921051_75921151_75921305_75921390_75921898_75921962_75923250_75923326_75923469_75923527_75923601_75923714_75929235_75929425_75929493_75929788_75929874_75929986_75930810_75931069_75931146_75931228_75931331_75931656_75932415_75932494_75932982_75933073_75933587_75933651_75934518_75934897_75935439_75935605_75936324_75936451_75936545_75936677_75936758
98757	chr14	+	816	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	30	-161	30	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	46321614	46322430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321600_46322400
98758	chr5	+	10385	41	Genic_Genomic	ENSMUSG00000106457.2	novel	4020	1	NA	NA	-69012	125703	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	52	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGACACGCACTCACACACA	NA	False	NA	NA	False	NA	NA	NA	25505005	25703740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_25505575_25507703_25507937_25509675_25509736_25510900_25510988_25513438_25513549_25514597_25516418_25518253_25518547_25518977_25520876_25523991_25524173_25525304_25525379_25528649_25528864_25529085_25529220_25534020_25534145_25534424_25534574_25543410_25543579_25549904_25550036_25552357_25552476_25554806_25554939_25556049_25556268_25557228_25557291_25558296_25558404_25559329_25559496_25559631_25559819_25564309_25564414_25564588_25564689_25568440_25568561_25571073_25571193_25577762_25578468_25579487_25579566_25580339_25580454_25580873_25581026_25582110_25582281_25590642_25590758_25592921_25593094_25600386_25600550_25609276_25609386_25610367_25610518_25614131_25614333_25619885_25620022_25648817_25648906_25703386
98759	chr7	+	2880	5	NNC	ENSMUSG00000064194.11	novel	578	5	NA	NA	-7	-185	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	176.4291642558	11	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCCAGGTTGGGGGCACT	NA	False	NA	NA	False	NA	NA	NA	42827004	42841348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_42827128_42836593_42836721_42836916_42836978_42838725_42838929_42838982
98760	chr7	-	4373	11	NIC	ENSMUSG00000109336.2	novel	4391	13	NA	NA	-9775	12	intron_retention	FALSE	canonical	3	456	junction_6	31.3394320305905	208	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAACAAAATAACCAAA	8652	False	NA	NA	False	NA	NA	NA	28123107	28098961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28101333_28103044_28103169_28103288_28103488_28104913_28105033_28105378_28105465_28105793_28106113_28106655_28106743_28106893_28107004_28107360_28107601_28113296_28113768_28122860
98761	chr9	-	3882	13	Antisense	novelGene_ENSMUSG00000111030.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	38	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAACAAAGAAAAAATTAA	1318	False	NA	NA	False	NA	NA	NA	44549932	44518418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_44518890_44524124_44524188_44525507_44525612_44534913_44535044_44535769_44535917_44537682_44537778_44538932_44539056_44539932_44540067_44541319_44541435_44542676_44542741_44545386_44545492_44546978_44547163_44547785
98762	chr10	+	2554	13	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1903.25889375741	85	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017168_81018030
98763	chr1	-	766	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-88	0	-88	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	NA	False	NA	NA	False	NA	NA	NA	24653820	24653054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653800
98764	chr9	-	4963	10	NNC	ENSMUSG00000103409.3	novel	1424	4	NA	NA	-39476	4908	intron_retention	FALSE	non_canonical	0	0	junction_1	0	5723	69	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAAATGGGTCGCTGGGA	3586	False	NA	NA	False	NA	NA	NA	107513750	107464920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107465144_107467099_107467221_107467306_107467391_107467494_107467860_107467992_107468044_107468128_107468308_107468398_107468505_107468764_107468903_107469271_107472795_107513577
98765	chrX	-	5814	29	FSM	ENSMUSG00000062949.14	ENSMUST00000033480.13	5939	29	124	1	124	-1	multi-exon	FALSE	canonical	3	14	junction_1	18.7130588474619	81	33	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACAATGGGTATTCGAGT	NA	False	NA	NA	False	NA	NA	NA	59449048	59268653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_59271154_59281916_59282071_59283829_59283934_59286132_59286199_59288121_59288258_59290523_59290652_59293248_59293309_59305520_59305667_59307011_59307115_59312095_59312271_59315093_59315358_59321967_59322150_59322736_59322841_59324153_59324228_59325391_59325464_59326016_59326169_59326927_59327090_59335253_59335452_59335929_59336081_59337279_59337362_59337678_59337744_59338966_59339018_59340548_59340653_59342320_59342450_59349584_59349693_59352556_59352638_59355075_59355166_59366793_59366914_59448995
98767	chr13	+	4115	7	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	3	4214	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	16.3978318349985	40	54	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGACCAACTTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	61803119	61895798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61803248_61803432_61803494_61841560_61841581_61891418_61891831_61892166_61893373_61893454_61893701_61893756
98768	chr5	-	2025	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-12	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	3	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACACAAACAGCTTGTGG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890680_142890987_142891232_142891318_142891448_142892406
98769	chr18	+	3416	2	Intergenic	novelGene_4499	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	53	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	NA	False	NA	NA	False	NA	NA	NA	9592767	9597886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_9593009_9594711
98770	chr14	+	6396	3	NNC	ENSMUSG00000040717.7	novel	2134	9	NA	NA	11843	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8.5	55	90	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAAGCCTGCAGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	26821564	26829237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_26822383_26823233_26826807_26827232
98771	chr5	+	4543	5	Intergenic	novelGene_805	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	10.4731800328267	48	23	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCATCTTATATGAAATT	NA	False	NA	NA	False	NA	NA	NA	110014588	110094919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_110014679_110027935_110028063_110028252_110028314_110029628_110033768_110094793
98772	chr6	-	3546	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-2	-44	intron_retention	FALSE	non_canonical	0	0	junction_15	281.393657526014	7	35	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGGTAAAGTCATTAAATA	3046	False	NA	NA	False	NA	NA	NA	71885736	71857670	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71870511_71871270_71871357_71871804_71872023_71872888_71872977_71874096_71874153_71875332_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
98773	chr13	+	4466	4	Intergenic	novelGene_1474	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	133	52	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGCTCAAAGCAAGACACAG	NA	False	NA	NA	False	NA	NA	NA	74579834	74610752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_74580985_74593475_74596681_74598076_74598135_74610699
98774	chr6	-	760	2	FSM	ENSMUSG00000057666.19	ENSMUST00000147954.2	565	2	-200	5	-200	-4	multi-exon	FALSE	canonical	3	6089	junction_1	0	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCACCTCTCCTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	125139690	125138820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125139065_125139174
98775	chr15	-	3914	20	NNC	ENSMUSG00000033075.18	novel	3806	19	NA	NA	-4919	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_19	66.0454808459005	4	102	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGCGGGCCCTTTCAC	8159	False	NA	NA	False	NA	NA	NA	97996544	97939112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97995703_97995839_97996468
98776	chr15	-	3116	20	NNC	ENSMUSG00000048154.18	novel	19823	55	NA	NA	-4764	1881	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	17.6581888751092	18	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTCTGGCCCATACCCCGA	4278	False	NA	NA	False	NA	NA	NA	98758954	98750713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98751587_98751670_98751722_98751913_98751988_98752063_98752306_98752411_98752497_98752594_98752733_98752905_98753017_98753190_98753257_98753415_98753567_98753648_98753780_98753958_98754064_98754150_98754271_98754487_98754710_98755268_98755317_98755405_98755516_98755602_98755768_98755922_98756105_98757390_98757496_98758514_98758626_98758928
98777	chrM	+	1668	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-290	0	-290	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-1	True	NA	NA	False	NA	NA	NA	9876	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
98779	chr15	-	3271	1	Intergenic	novelGene_3226	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAACAAGACCGTTTTCT	1911	False	NA	NA	False	NA	NA	NA	22703098	22699827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699800_22703100
98780	chr5	+	1816	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	46	212	-24	-212	intron_retention	FALSE	canonical	3	7201	junction_3	5858.17585942928	15	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697571	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484
98781	chr15	+	972	7	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	1089	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4309.86846924848	4538	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAGTTATTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	76788284	76791603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790504_76791464
98783	chr2	-	645	1	FSM	ENSMUSG00000080859.2	ENSMUST00000119438.2	645	1	18	-18	18	18	mono-exon	FALSE	NA	NA	NA	NA	NA	12	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATACCCTACCAAATCGT	NA	False	NA	NA	False	NA	NA	NA	105385172	105384527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_105384500_105385200
98784	chr16	-	559	1	Intergenic	novelGene_3688	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	72	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212034	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
98785	chr1	+	5350	9	FSM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	49	1339	49	790	multi-exon	FALSE	canonical	3	399	junction_6	47.8289595851718	2	228	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTGGACCTATCTGTTC	NA	False	NA	NA	False	NA	NA	NA	127701949	127734459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898
98786	chr5	+	1173	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-5	-166	-5	166	mono-exon	FALSE	NA	NA	NA	NA	NA	19	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCGCTGCACCCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96009567	96010740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009600_96010700
98788	chr9	+	2993	10	ISM	ENSMUSG00000061393.15	ENSMUST00000215746.2	3175	11	25040	-1	-2862	1	3prime_fragment	TRUE	canonical	3	128	junction_2	23.9773555724336	38	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAGAAAAAAAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	119256549	119264062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119256729_119257032_119257143_119257266_119257419_119257490_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
98789	chrX	+	936	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	-3	-51	-3	51	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAAAGTCA	NA	False	NA	NA	False	NA	NA	NA	51987461	51988397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_51987500_51988400
98790	chr2	+	1128	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11386	65	multi-exon	FALSE	non_canonical	0	0	junction_1	0	181	42	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCTCAGTTGCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	11413648	11426096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
98791	chr6	-	1835	7	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	30	0	intron_retention	FALSE	canonical	3	167	junction_6	617.458883021552	4	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	124942223	124935778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
98793	chr2	+	1882	1	FSM	ENSMUSG00000081272.2	ENSMUST00000119733.2	1308	1	-112	-462	-112	462	mono-exon	FALSE	NA	NA	NA	NA	NA	4591	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATAGTATGT	NA	False	NA	NA	False	NA	NA	NA	49198054	49199936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_49198100_49199900
98794	chr13	-	5460	7	Antisense	novelGene_ENSMUSG00000055763.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	78.7564812147758	3	115	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	66271962	65950184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65951815_65952066_65952481_65952723_65953125_65954300_65954362_65954561_65954643_66269005_66269560_66269643
98795	chr9	+	2352	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	77	3	77	-3	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	9825	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTGTGTTTTGTTTTGT	1741	False	NA	NA	False	NA	NA	NA	59563727	59586655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
98796	chr2	-	3545	4	Intergenic	novelGene_2840	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	96	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATAAAATCGACTTCCAAC	NA	False	NA	NA	False	NA	NA	NA	176675546	176534368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_176534903_176634799_176636905_176638336_176638599_176674902
98797	chrM	+	2168	2	Genic_Genomic	ENSMUSG00000064339.1_ENSMUSG00000064341.1	novel	1582	1	NA	NA	0	3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_2718_3166
98799	chr17	-	3621	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	-8	-610	-8	610	multi-exon	FALSE	canonical	3	280	junction_18	53.1587010751768	918	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTCGTGACCAAGGGC	NA	False	NA	NA	False	NA	NA	NA	24746920	24726925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
98800	chr17	+	2952	16	NIC	ENSMUSG00000041354.17	novel	943	8	NA	NA	5	-28	intron_retention	FALSE	canonical	3	21	junction_1	27.370706157415	5	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAATAAACCAAAACAC	4592	False	NA	NA	False	NA	NA	NA	34149913	34156633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_34150045_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
98801	chrUn_JH584304v1	-	3917	5	Intergenic	novelGene_4682	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_3	147.775167061316	2	84	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGATGTGTTGTCCTGGGC	NA	False	NA	NA	False	NA	NA	NA	59707	53137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_57152_58563_58836_59591
98802	chr5	+	348	1	Intergenic	novelGene_943	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1464	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGGTCCCGGCGGATCTT	NA	False	NA	NA	False	NA	NA	NA	146197791	146198139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
98803	chr7	+	1195	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	49	-12	49	12	mono-exon	FALSE	NA	NA	NA	NA	NA	4	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	51396443	51397638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
98804	chr11	-	3388	19	ISM	ENSMUSG00000040594.20	ENSMUST00000102815.10	5001	28	8956	84334	8304	265	internal_fragment	FALSE	canonical	3	105	junction_6	32.2576433664264	12	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAAACATAAGAGCTGAG	NA	False	NA	NA	False	NA	NA	NA	33454790	33246128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681
98805	chr5	+	2111	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	137	19	7	-19	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	1	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTGTTTGTTCACTGTGA	NA	False	NA	NA	False	NA	NA	NA	45650852	45670014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
98806	chr7	-	5262	21	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	11	-33	intron_retention	FALSE	canonical	3	20	junction_11	430.579548399596	30	45	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGGACACTGATAATAAAT	NA	False	NA	NA	False	NA	NA	NA	143153782	143111476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143124700_143124816_143125220_143125334_143128249_143128372_143129654_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
98807	chr4	-	2302	5	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	49	34	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCTCCTTCTGGACCCG	NA	False	NA	NA	False	NA	NA	NA	145178235	145158969	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159031_145160314_145160380_145173283_145173339_145176033_145176250_145176330
98808	chr15	+	7958	10	NNC	ENSMUSG00000022419.17	novel	8547	9	NA	NA	128	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	13.0251418797514	11	61	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTGCTGACTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	54975947	55122667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55115402_55118674_55119027
98809	chr13	-	2776	24	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	72	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	465.709625814798	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCATGGTACTTGGT	NA	False	NA	NA	False	NA	NA	NA	6698689	6631216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6646019_6646095_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664508_6664602_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
98810	chr3	-	4877	27	NIC	ENSMUSG00000042520.17	novel	3975	28	NA	NA	1	63	intron_retention	FALSE	canonical	3	204	junction_22	208.919851708424	12	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTCCCATCCCTATACCAT	3521	False	NA	NA	False	NA	NA	NA	89959808	89908056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
98811	chrM	-	338	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCCATGTGCGATTATT	10	True	NA	NA	False	NA	NA	NA	11468	11130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_11100_11500
98813	chr6	-	2005	8	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	48	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCGCCTGCTTCAGCTCT	9537	False	NA	NA	False	NA	NA	NA	67261714	67244025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67244391_67248178_67248330_67248867_67249012_67249122_67249213_67249847_67249921_67254742_67254921_67258629_67258804_67260884
98814	chr5	+	4206	14	NIC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	13	616	intron_retention	FALSE	canonical	3	156	junction_3	18.2614153323566	9	115	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTCCCAAAGCTAAAGC	NA	False	NA	NA	False	NA	NA	NA	24599418	24615668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24599582_24604910_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24612454_24613565_24613817_24614351
98815	chr13	-	6200	5	Antisense	novelGene_ENSMUSG00000114203.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	124	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAAGCCTCTTGCTGTTTG	NA	False	NA	NA	False	NA	NA	NA	99131764	99122878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_99124234_99125221_99126530_99126624_99127239_99127351_99127556_99129045
98816	chr8	+	5767	18	ISM	ENSMUSG00000070047.15	ENSMUST00000098796.10	14627	26	76618	16	-17415	-4	3prime_fragment	FALSE	canonical	3	28	junction_2	12.0097999199673	79	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTTTAGCTTTAATGCC	NA	False	NA	NA	False	NA	NA	NA	45479862	45505278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_45479909_45480520_45480718_45482492_45482647_45483148_45483383_45484301_45484692_45486375_45486591_45486868_45487007_45488501_45488646_45489155_45489354_45489712_45490515_45491296_45491429_45492836_45492995_45493570_45494034_45494916_45495071_45495245_45495357_45496959_45497592_45498067_45498206_45503817
98817	chr12	-	5697	1	ISM	ENSMUSG00000034111.7	ENSMUST00000037418.7	7409	6	28518	3	28518	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	48	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTTGAGTTCTTTCTT	6398	False	NA	NA	False	NA	NA	NA	87218710	87213013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_87213000_87218700
98818	chr11	-	6155	18	Antisense	novelGene_ENSMUSG00000025571.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	51	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCGGCTCAGTCCTGTCTA	1865	False	NA	NA	False	NA	NA	NA	117652685	117611897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_117614373_117622989_117623203_117624431_117624601_117626795_117626878_117629113_117629175_117630692_117630834_117632492_117632642_117633749_117633889_117638000_117638120_117640066_117640154_117640402_117640643_117643801_117643970_117646155_117646347_117646786_117646931_117648760_117648956_117649727_117649798_117650446_117650590_117651316
98819	chr4	+	1784	6	NNC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	22808	5497	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	63	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGCGGGCCCGGTGGGGG	NA	False	NA	86	True	NA	NA	NA	122752854	122758465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_122754011_122755726_122755867_122756193_122756281_122756415_122756542_122756693_122756881_122758377
98820	chr7	-	5953	18	Antisense	novelGene_ENSMUSG00000052707.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	88	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGGAGTAATGTGTGCT	NA	False	NA	NA	False	NA	NA	NA	122794516	122770284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_122771339_122772446_122772626_122773359_122773559_122776042_122776123_122776899_122776955_122778937_122779081_122779760_122779896_122780536_122780668_122781175_122781255_122781466_122781675_122783376_122783510_122785784_122785942_122786572_122786716_122788009_122788117_122789065_122789287_122790719_122790792_122791279_122791422_122791801
98821	chr3	+	7594	12	NIC	ENSMUSG00000027680.16	novel	2127	15	NA	NA	1	-1548	intron_retention	FALSE	canonical	3	1060	junction_6	86.1942837168135	17	97	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCCCATTGCTGCAGAT	4850	False	NA	NA	False	NA	NA	NA	34074247	34121938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976
98822	chr11	+	1768	5	ISM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	19109	12	374	-12	3prime_fragment	FALSE	canonical	3	8977	junction_4	840.54312798333	10	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTAACACAGGTGTAAC	230	False	NA	21	True	NA	NA	NA	75642803	75656659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
98823	chr15	+	5712	3	Antisense	novelGene_ENSMUSG00000053929.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTACATTGTCTGCTGGC	4696	False	NA	NA	False	NA	NA	NA	76531146	76537818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_76531969_76532298_76532510_76533139
98824	chr4	-	3031	4	NNC	ENSMUSG00000093594.2	novel	2516	4	NA	NA	24	-431	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	15	70	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTCCTGTGTGCGTCTG	9495	False	NA	NA	False	NA	NA	NA	147894273	147867206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147868955_147889671_147889741_147891546_147891641_147893153
98826	chr13	+	909	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	5	24	5	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	153	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACAAAAAAACAAAAAAAA	7967	False	NA	NA	False	NA	NA	NA	74554532	74555441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
98827	chr13	-	2731	14	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2639.29751726011	2	51	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	4748	False	NA	NA	False	NA	NA	NA	58550333	58538955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542355_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
98828	chrM	+	657	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	303	-3	303	3	mono-exon	FALSE	NA	NA	NA	NA	NA	5	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	0	True	NA	151	True	NA	NA	NA	3053	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3100_3700
98829	chr16	-	564	1	Intergenic	novelGene_3793	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
98830	chr5	+	1079	6	NNC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	-2	-1157	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5992.27925250484	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	473	False	NA	NA	False	NA	NA	NA	129097263	129100230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099676
98831	chr19	+	2227	3	NIC	ENSMUSG00000024989.16	novel	859	5	NA	NA	-35	-1159	intron_retention	FALSE	canonical	3	204	junction_1	47.5	17	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTTTCAAATGTTTACAAG	NA	False	NA	NA	False	NA	NA	NA	38043423	38050075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38043530_38045857_38046432_38048528
98833	chr6	+	8595	19	NNC	ENSMUSG00000108282.2	novel	4214	4	NA	NA	-141	270076	intron_retention	FALSE	non_canonical	0	0	junction_1	0	106	48	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACGACCGGCGCCCGCG	NA	False	NA	NA	False	NA	NA	NA	119547760	119825094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_119552724_119571745_119571940_119597275_119597371_119607563_119607708_119671530_119671691_119699131_119699272_119720250_119720444_119726800_119726939_119728159_119728301_119730218_119730358_119738104_119738278_119750699_119750861_119754946_119755035_119756439_119756593_119760348_119760424_119773866_119774285_119801346_119802171_119802641_119802787_119824843
98834	chr13	-	5254	14	NIC	ENSMUSG00000021375.12	novel	3917	16	NA	NA	11	-1	intron_retention	FALSE	canonical	3	23	junction_1	18.0325150113104	66	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCAAAGTGTTGATCGT	NA	False	NA	NA	False	NA	NA	NA	46940103	46902571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_46906349_46914748_46914901_46916823_46916930_46918075_46918124_46922629_46922708_46924692_46924846_46924981_46925075_46926246_46926424_46927059_46927185_46928878_46928935_46930562_46930690_46932369_46932470_46938721_46938869_46939988
98835	chr10	+	2978	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	25	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1898.57666343468	8	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2206	False	NA	NA	False	NA	NA	NA	81012489	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017122_81017205_81017245_81017326_81017460_81017722
98836	chr2	-	2322	3	NIC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-22	767	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	355.5	4	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCACAGTAGTCTGTAAG	NA	False	NA	NA	False	NA	NA	NA	177482151	177472816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177474890_177476312_177476440_177482029
98837	chr4	+	8174	51	NIC	ENSMUSG00000028763.19	novel	14187	97	NA	NA	17136	-28	combination_of_known_junctions	TRUE	canonical	3	16	junction_2	15.2826699238059	92	83	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTTAATAAACGGTGCTA	NA	False	NA	NA	False	NA	NA	NA	137266905	137297912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_137266991_137267281_137267418_137267505_137267661_137267969_137268121_137268718_137268865_137268951_137269088_137269541_137269694_137269822_137269959_137270049_137270202_137270834_137270965_137271152_137271305_137271675_137271815_137271898_137272051_137272588_137272725_137272829_137272982_137273865_137274005_137275331_137275484_137275656_137275802_137276842_137276989_137277289_137277432_137277651_137277804_137278115_137278258_137278374_137278516_137279102_137279238_137279405_137279588_137280089_137280286_137280485_137280666_137280906_137281168_137282399_137282605_137283950_137284049_137284484_137284752_137286123_137286234_137286400_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296157_137296571_137296676_137296802
98838	chr8	-	2869	2	ISM	ENSMUSG00000031508.15	ENSMUST00000211690.2	2625	4	3643	3379	3643	-1	internal_fragment	FALSE	canonical	3	548	junction_1	0	5	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAAGCCCAGAACTTGCTC	7758	False	NA	NA	False	NA	NA	NA	11670983	11664963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_11665911_11669061
98839	chr3	+	1063	2	NNC	ENSMUSG00000028124.16	novel	762	3	NA	NA	1103	362488	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1018	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGGGCTCATCATCGGCCG	5857	False	NA	NA	False	NA	NA	NA	122050338	122426869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_122050956_122426423
98840	chr15	-	1254	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-26	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	674.096159796999	1	42	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTGTGTGTATTTA	NA	False	NA	NA	False	NA	NA	NA	51728876	51649958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650229_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
98841	chr2	+	2959	1	Intergenic	novelGene_2850	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	103	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAAAAAGTCTTTCAC	NA	False	NA	NA	False	NA	NA	NA	177179805	177182764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_177179800_177182800
98842	chr2	+	2538	8	FSM	ENSMUSG00000054766.14	ENSMUST00000067996.7	2834	8	268	28	268	-28	multi-exon	FALSE	canonical	3	3891	junction_1	4471.27957761808	110	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAGGAACATAAAGATTT	NA	False	NA	NA	False	NA	NA	NA	29956735	29962561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29956906_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
98843	chr16	+	5119	2	Intergenic	novelGene_3605	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	99	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCTGTTTCTTGTG	NA	False	NA	-73	True	NA	NA	NA	17829603	17834850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_17831490_17831617
98844	chr4	+	2898	7	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	9	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	187.187665785495	7	17	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	145397263	145431007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422723_145422806_145425813_145425941_145427474_145428207_145428962_145429340_145429675
98845	chr11	+	2300	1	Intergenic	novelGene_2352	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAGGAGGCTTTATAGAT	NA	False	NA	NA	False	NA	NA	NA	57446709	57449009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57446700_57449000
98846	chrY	-	1076	1	Antisense	novelGene_ENSMUSG00000096438.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTTCAAATTTTAAAAC	NA	False	NA	NA	False	NA	NA	NA	38576130	38575054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrY_-_38575100_38576100
98847	chr16	-	6105	32	NIC	ENSMUSG00000064061.14	novel	5820	32	NA	NA	7	-725	combination_of_known_junctions	FALSE	canonical	3	53	junction_1	21.2442316342938	9	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATAAAGCCTATTTTAAA	4428	False	NA	NA	False	NA	NA	NA	48814297	48745321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_48747709_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
98848	chr4	+	1521	2	Genic_Genomic	ENSMUSG00000059195.11	novel	1128	1	NA	NA	-5	708	multi-exon	FALSE	canonical	0	0	junction_1	0	30	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	103420593	103422434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_103420642_103420961
98849	chr5	+	8106	52	NNC	ENSMUSG00000042010.17	novel	676	5	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_31	14.122820402889	197	44	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCCTTGATTTATT	NA	False	NA	NA	False	NA	NA	NA	114314008	114388822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_114314252_114322110_114322244_114326391_114326531_114328136_114328247_114328390_114328473_114329215_114329315_114329912_114330023_114330134_114330246_114333284_114333495_114333695_114333867_114334720_114334883_114336237_114336402_114338300_114338452_114338556_114338661_114339959_114340042_114341450_114341597_114342732_114342884_114345296_114345432_114347813_114347961_114348965_114349155_114350711_114350813_114351372_114351462_114351673_114351799_114354661_114354776_114354871_114354986_114355709_114355800_114356922_114357042_114361292_114361431_114361868_114361969_114362049_114362158_114363634_114363692_114363916_114363957_114364737_114364954_114366591_114366748_114367791_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
98850	chr15	+	1120	4	NIC	ENSMUSG00000003970.10	novel	1020	5	NA	NA	7	-5	intron_retention	FALSE	canonical	3	10804	junction_1	296.542670716299	15	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATCCGGCGTGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	76788284	76790509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76788881_76789017_76789237_76790055_76790172_76790320
98851	chr11	+	1919	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4054.90411230648	4	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGGTGTAACTATGGATC	3038	False	NA	NA	False	NA	NA	NA	75623741	75656667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642836_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
98853	chr17	+	628	2	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTCACAATGCAGCAGGG	NA	False	NA	NA	False	NA	NA	NA	45878706	45879438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153
98854	chr5	+	5410	18	Antisense	novelGene_ENSMUSG00000061755.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTCCACTTTCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	41945073	41976522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_41946295_41949141_41949281_41951569_41951727_41952227_41952306_41952411_41952463_41955380_41955424_41957111_41957150_41957232_41957308_41958101_41958180_41958504_41958586_41962496_41962577_41964033_41964103_41964512_41964586_41966046_41966106_41967395_41967444_41970466_41970550_41971473_41971538_41973549
98856	chr6	+	4793	16	NNC	ENSMUSG00000030096.9	novel	738	6	NA	NA	-3	-767	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	147.732039705528	4	72	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACACACACAACAAAACCCAG	NA	False	NA	NA	False	NA	NA	NA	91678634	91735280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_91678698_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894_91732938_91733000_91733780_91734105
98857	chr12	+	4978	2	Intergenic	novelGene_4380	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	104	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	68605039	68610270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605599_68605851
98858	chr17	-	630	4	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	2116	2003	427	-200	internal_fragment	FALSE	canonical	3	9617	junction_2	389.651411164161	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCGGGCTCCCTTCGAC	NA	False	NA	NA	False	NA	NA	NA	45882081	45880703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45880753_45881183_45881493_45881591_45881726_45881943
98859	chr7	-	1361	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-2	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7137.65130866461	2	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	126398344	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126398148
98860	chr16	-	2346	6	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-1181	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	559.006976700649	2	24	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTTGAACCAGTTGCCC	8640	False	NA	NA	False	NA	NA	NA	33787408	33776344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781783_33782611_33784241_33784296_33787195
98861	chr1	-	2072	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	7	-1515	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	115	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTTCTCATCTTTAACCA	NA	False	NA	NA	False	NA	NA	NA	13730763	13695068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695259_13696158_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
98862	chr15	-	5136	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	135	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAGAGCGCTCTTGAATAA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704553_22704649
98863	chr10	+	8357	21	NNC	ENSMUSG00000025408.16	novel	969	2	NA	NA	3	15490	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1877	44	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACGAAACAGGAAATGGTTA	NA	False	NA	NA	False	NA	NA	NA	127126665	127147647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_127132309_127132408_127132508_127132747_127132812_127133332_127133521_127133602_127133708_127133789_127133923_127135116_127135326_127135811_127135933_127136041_127136140_127136275_127136455_127138685_127138758_127140055_127140256_127141290_127141493_127141607_127141730_127144130_127144233_127144368_127144551_127144779_127144852_127145871_127146008_127146088_127146168_127146312_127146403_127147386
98864	chrM	+	1259	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	20	-135	20	135	mono-exon	FALSE	NA	NA	NA	NA	NA	17	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACATAAATTTACATAGTA	18	False	NA	107	True	NA	NA	NA	14164	15423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14200_15400
98865	chr12	+	1647	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	305	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2008.44460426347	1	13	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACACACACACACATAGTG	NA	False	NA	NA	False	NA	NA	NA	24758281	24763645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758441_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
98866	chr2	-	1021	9	NNC	ENSMUSG00000025781.15	novel	1166	10	NA	NA	3	-58	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1986.08210036116	1	55	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGACAGCAGGATGTTT	9573	False	NA	NA	False	NA	NA	NA	10085252	10060898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_10060973_10063777_10063904_10064311_10064458_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
98867	chr1	-	2051	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	41	748	-10	-4	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	1	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGTTTGTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	75195897	75191619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
98868	chr4	+	5119	23	NNC	ENSMUSG00000028423.16	novel	4594	24	NA	NA	83	-31	intron_retention	FALSE	non_canonical	0	0	junction_20	206.394631232629	6	212	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAATCATTAAACAAGGCA	-3	True	NA	NA	False	NA	NA	NA	40970988	41025962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023617_41023760_41024473_41024579_41024800
98870	chr2	-	1459	4	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5542	-1504	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_2	13.7679176187089	11	11	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGATTGCTCTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	177021642	177007816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177008918_177009124_177009252_177017944_177018063_177021529
98871	chr10	+	3075	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1959.32627594827	5	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2198	False	NA	NA	False	NA	NA	NA	81012481	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014911_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
98872	chrX	-	4345	8	ISM	ENSMUSG00000031166.14	ENSMUST00000130832.8	4374	9	248	190	-11	-190	intron_retention	FALSE	canonical	3	33	junction_5	3.69776545872708	5	71	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTTTCTTTAATGAGTC	7207	False	NA	NA	False	NA	NA	NA	7998761	7989752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_7991969_7992319_7992439_7994049_7994192_7994272_7994454_7995207_7995516_7996241_7996373_7996494_7996605_7997623
98873	chr1	+	2868	7	Antisense	novelGene_ENSMUSG00000022995.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGGTAAATTCATTAAA	NA	False	NA	NA	False	NA	NA	NA	181730500	181745882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_181731965_181732373_181733463_181733951_181734015_181735865_181735944_181740873_181740939_181744763_181744812_181745821
98874	chr16	-	535	1	Intergenic	novelGene_3809	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	537	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGCTGCGGGATGAACCG	NA	False	NA	NA	False	NA	NA	NA	57212031	57211496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
98875	chr17	+	699	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	289	861	289	-861	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACGGACCAGAGCGAAAGCA	NA	False	NA	57	True	NA	NA	NA	40157532	40158231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157500_40158200
98876	chrUn_MU069435v1	-	485	1	Intergenic	novelGene_4728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	485	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_500
98877	chr13	-	324	1	Intergenic	novelGene_1354	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	131	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGTTTTTATCATACT	NA	False	NA	NA	False	NA	NA	NA	45023371	45023047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_45023000_45023400
98878	chr9	+	4936	2	Fusion	ENSMUSG00000119388.1_ENSMUSG00000032399.9_ENSMUSG00000065752.3	novel	596	4	NA	NA	-1	-152	intron_retention	FALSE	canonical	3	19805	junction_1	0	16	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCCTTGTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_64085300_64085504
98879	chr2	-	2081	12	Antisense	novelGene_ENSMUSG00000039678.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCTCCGGGGACACGGG	8210	False	NA	NA	False	NA	NA	NA	30040649	30023837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30023924_30024807_30024881_30026682_30026724_30027130_30027193_30027291_30027392_30030484_30030568_30032270_30032434_30036663_30036873_30037371_30037535_30038694_30038791_30038935_30039009_30039717
98880	chr18	-	2916	11	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	-3	-7	intron_retention	FALSE	canonical	2	2	junction_4	57.2458732137086	2	89	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAACCAAAACCTCTAGAT	2798	False	NA	NA	False	NA	NA	NA	34884580	34866056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
98882	chr14	+	1863	13	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	18	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	582.414132917654	2	16	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATCCTCAGACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	30271185	30295576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30292989_30294216_30294288_30295293
98883	chr8	+	6535	40	NNC	ENSMUSG00000004677.18	novel	7082	40	NA	NA	18098	-7	intron_retention	FALSE	canonical	0	0	junction_18	39.5467083753725	83	105	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGGGTTAGTGTGGTCT	1476	False	NA	NA	False	NA	NA	NA	71743496	71813346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_71743781_71767768_71767864_71774425_71774489_71775577_71775678_71775908_71776010_71776507_71776638_71778496_71778587_71780523_71780641_71781189_71781325_71783351_71783474_71785897_71786040_71786270_71786476_71786956_71787039_71789519_71789610_71791550_71791665_71793403_71793444_71795405_71795529_71796256_71796338_71796736_71796845_71798673_71798797_71800257_71800575_71800974_71801839_71802778_71802834_71803570_71803693_71804530_71804659_71804813_71804990_71806385_71806485_71806605_71806780_71807160_71807200_71807359_71807472_71807881_71807956_71808338_71808532_71808609_71808739_71808928_71809035_71809164_71809297_71810756_71810881_71811259_71811308_71811606_71811738_71811968_71812097_71812307
98884	chr7	+	1584	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	0	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
98885	chr2	+	4090	29	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	16	3009	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	144.950712946413	24	34	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAATCCAAAAACACTCC	NA	False	NA	NA	False	NA	NA	NA	51962859	52000746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51998451_51998604_51999203_51999288_51999362_51999415_51999922
98886	chr10	+	3109	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	-1	2	-1	-2	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	1	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACACTCCTGCCTGTCATT	1382	False	NA	NA	False	NA	NA	NA	79690259	79700264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
98887	chr13	+	3390	27	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-7	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	269.670818947316	2	132	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAACCTGTCTGAGTTTT	NA	False	NA	NA	False	NA	NA	NA	6598202	6630068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605689_6606581_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624409_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
98888	chr2	-	2554	1	Intergenic	novelGene_2787	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	46	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTATAGCCCTTTGTA	NA	False	NA	NA	False	NA	NA	NA	167280900	167278346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_167278300_167280900
98889	chr7	-	3560	18	NIC	ENSMUSG00000035401.10	novel	3564	20	NA	NA	2	71	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	25.4725580001826	4	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCACAGAGGAATGTAC	3692	False	NA	NA	False	NA	NA	NA	98305800	98239735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98240092_98243958_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98297011_98297112_98303950_98304060_98305680
98890	chr11	+	3385	7	NNC	ENSMUSG00000036819.15	novel	4315	6	NA	NA	83	1312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	21.5921796542689	44	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTCCCCAACTTGCTTC	9640	False	NA	NA	False	NA	NA	NA	59341029	59350705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_59341339_59341500_59341667_59344336_59344472_59344653_59344886_59345758_59345906_59346132_59347021_59349197
98891	chrM	+	2044	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1092	5	-1092	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	4	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	44	False	NA	21	True	NA	NA	NA	1658	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1700_3700
98892	chr11	+	1316	8	NNC	ENSMUSG00000020372.16	novel	1447	8	NA	NA	-239	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2563.61159463817	2	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTTTTATGACAAAGTC	NA	False	NA	NA	False	NA	NA	NA	48690919	48696870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_48691393_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
98893	chr15	-	1624	1	Intergenic	novelGene_3265	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATATATTGGCGGCTACAC	9840	False	NA	NA	False	NA	NA	NA	22705050	22703426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22703400_22705000
98894	chr5	+	4323	11	NNC	ENSMUSG00000029283.18	novel	3679	11	NA	NA	25	-6	intron_retention	FALSE	canonical	2	6	junction_8	106.744976462595	15	47	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTTATATCAGAATACTT	NA	False	NA	NA	False	NA	NA	NA	107112212	107132291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107123527_107123851_107123878_107124495_107124579_107127160_107127311_107130829
98895	chr4	+	2692	9	Intergenic	novelGene_2123	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	28	38	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACCTTTTCCCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	146912398	147025970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146913220_146914059_146914272_146976147_146976633_146976962_146977116_146978205_146978335_146982170_146982228_147021699_147022241_147022278_147022474_147025871
98896	chr15	-	2484	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-135	-105	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1556.05845541441	30	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTCTTTTAGAATGTAA	623	False	NA	NA	False	NA	NA	NA	36793898	36771118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771924_36772207_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
98897	chr15	+	1813	1	Intergenic	novelGene_3224	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGAATGAAGCGAAGATC	NA	False	NA	NA	False	NA	NA	NA	22699825	22701638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22699800_22701600
98898	chr2	-	4669	5	Fusion	ENSMUSG00000085513.2_ENSMUSG00000095362.8	novel	1576	4	NA	NA	-37	1976	multi-exon	TRUE	non_canonical	0	0	junction_1	141.816783209887	1	91	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAACTTGCTTCCTGGTC	NA	False	NA	NA	False	NA	NA	NA	177482166	177231497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_177233598_177472701_177474890_177476043_177476105_177476312_177476496_177482029
98899	chr2	-	3373	20	NNC	ENSMUSG00000027194.17	novel	3408	20	NA	NA	3	14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	56.3710009729517	2	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAAGTGATCTTTAT	NA	False	NA	NA	False	NA	NA	NA	94237021	94158267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_94158831_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209162_94216431_94216527_94236851
98900	chr18	+	4813	7	Intergenic	novelGene_4580	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	148	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCACCCTCTCACCTGTT	NA	False	NA	NA	False	NA	NA	NA	90138191	90490040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_90138922_90222712_90222854_90382464_90382909_90445842_90446738_90446795_90447461_90487522_90489325_90489904
98902	chr7	-	5171	10	NNC	ENSMUSG00000030970.17	novel	1997	10	NA	NA	53	3052	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_9	330.945036651029	17	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATCTTGCCGTGGATA	NA	False	NA	NA	False	NA	NA	NA	132724842	132586239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132683485_132683590_132724715
98903	chr17	+	4639	17	NNC	ENSMUSG00000015127.15	novel	3414	5	NA	NA	8	5683	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	22.5408483369637	3	40	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGTCACGTGAGTGACAGC	NA	False	NA	NA	False	NA	NA	NA	25441520	25459100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25441697_25447556_25447641_25448212_25448441_25449180_25449384_25449494_25449750_25450685_25451910_25452064_25453697_25453781_25453863_25453952_25454085_25454154_25454239_25454318_25454431_25454504_25454602_25454678_25454761_25454827_25454884_25458747_25458816_25458886_25458944_25459032
98904	chr15	+	607	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	469	-74	-469	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCACTGCCACCCAGAAGA	88	False	NA	NA	False	NA	NA	NA	12574900	12575507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12575500
98905	chr5	-	1756	4	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	5084	junction_3	2891.7632836885	22	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548742	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65545785_65545904_65546954_65547730_65548336_65548718
98906	chr1	+	1602	5	NNC	ENSMUSG00000013973.13	novel	849	5	NA	NA	-11	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	109.792987025584	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTGTGGCCCTTTGCAG	1646	False	NA	NA	False	NA	NA	NA	171157166	171169259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171157261_171165819_171166209_171166390_171166499_171167760_171167905_171168392
98907	chr7	-	3118	2	Intergenic	novelGene_2873	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGACAGCATTTTCAACAAA	NA	False	NA	NA	False	NA	NA	NA	5215427	5205618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_5208724_5215414
98908	chr4	-	4028	1	NIC	ENSMUSG00000073888.14	novel	552	4	NA	NA	25	-7	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACGACAATCTCCAAAAACT	658	False	NA	NA	False	NA	NA	NA	41773512	41769484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_41769500_41773500
98909	chr16	+	1439	3	NNC	ENSMUSG00000022545.14	novel	3480	11	NA	NA	11782	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	31.5	41	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	12962036	12966598	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_12962154_12962264_12962378_12965389
98910	chr8	+	10353	7	Antisense	novelGene_ENSMUSG00000076042.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	118	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGCAAGATTTTGCTGAAA	NA	False	NA	NA	False	NA	NA	NA	64706579	65082989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_64708869_64713546_64714385_64743445_64745619_64900823_64904987_64983746_64983934_64990738_64991338_65082885
98911	chr17	+	4123	3	NIC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	40	-2	intron_retention	FALSE	canonical	3	3795	junction_1	326.5	20	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3076	False	NA	NA	False	NA	NA	NA	35816954	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_35820436_35820877_35821037_35821184
98912	chr7	-	5823	12	NNC	ENSMUSG00000030986.14	novel	2955	12	NA	NA	-16	3874	intron_retention	FALSE	non_canonical	0	0	junction_1	167.588831754761	2	103	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCACACTGAGAACAGAGCA	NA	False	NA	NA	False	NA	NA	NA	133378446	133318796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_133319516_133320832_133321006_133322433_133323126_133323877_133324060_133324770_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350767_133361128_133361643_133378330
98913	chr15	-	9086	37	Antisense	novelGene_ENSMUSG00000050310.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	85	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCGAGACAAGACACACAA	7878	False	NA	NA	False	NA	NA	NA	6829720	6738111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_6738159_6764842_6764942_6773806_6773872_6774927_6775058_6780134_6780201_6785939_6786065_6788964_6789137_6793758_6793827_6794530_6794598_6797531_6797617_6798725_6798812_6799222_6799312_6799403_6799474_6799601_6799684_6801611_6801714_6803289_6803459_6804089_6804188_6804310_6804358_6805528_6805665_6806232_6806434_6806795_6806924_6807410_6807574_6807719_6807797_6808666_6808746_6811135_6811245_6811641_6811730_6812559_6812658_6813039_6813145_6813411_6813643_6815856_6816861_6818909_6819088_6820018_6820101_6821067_6821307_6823453_6823613_6823924_6824050_6825376_6825516_6825642
98914	chr2	-	2591	7	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	101	multi-exon	FALSE	canonical	0	0	junction_1	62.8640508469577	9	72	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAAAGAAGTTGC	NA	False	NA	NA	False	NA	NA	NA	156681710	156631630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
98915	chr11	+	1162	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17109	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGACGCGGGCTCTCCGC	NA	False	NA	NA	False	NA	NA	NA	33104924	33113076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33105220_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33109999_33110334_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
98916	chr9	+	3947	2	Intergenic	novelGene_1128	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	18	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTATTATATATAATGTT	NA	False	NA	NA	False	NA	NA	NA	93279349	93283335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_93281137_93281175
98918	chrX	-	3480	13	NNC	ENSMUSG00000002010.18	novel	2080	10	NA	NA	-3929	-6	intron_retention	FALSE	non_canonical	0	0	junction_7	685.283938516648	121	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGAACTTGGCCCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	72834432	72822574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72822778_72823071_72823133_72823219_72823730_72823818_72824637_72824757_72824819_72825282_72826323_72830380_72830538_72830805_72830911_72832438_72832555_72833400_72833478_72833633_72833725_72833962_72834029_72834257
98919	chr14	-	9258	10	FSM	ENSMUSG00000021972.15	ENSMUST00000176128.8	2958	10	9	-6309	-6	-1283	multi-exon	FALSE	canonical	3	4	junction_1	16.1245154965971	23	83	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTTTTCAGTTCTTCC	7673	False	NA	NA	False	NA	NA	NA	65187311	65053357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_65061148_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
98920	chr4	+	2788	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.443251190051	1	31	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	924	False	NA	NA	False	NA	NA	NA	145237358	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237410_145239538_145239670_145257370_145257486_145261385_145261513_145263160
98921	chr6	-	3097	10	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-18899	-6	intron_retention	FALSE	canonical	2	3	junction_8	839.871551025645	1	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATGCCAGGAACTGGG	4114	False	NA	NA	False	NA	NA	NA	124961400	124935784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124939410_124939584_124939661_124941686_124941892_124943600_124943719_124944866_124944985_124958964_124959062_124961280
98923	chr14	+	1273	10	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	4	178	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	739.342350410898	9	17	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAATGGCTCACGTATGTGC	NA	False	NA	NA	False	NA	NA	NA	21881637	21895765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888656_21888687_21890486_21890638_21893949_21894008_21895213
98924	chrUn_MU069435v1	+	587	1	Intergenic	novelGene_4755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	704	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCGGGCTTTCCCGTGG	NA	False	NA	NA	False	NA	NA	NA	0	587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_600
98925	chr2	+	5014	15	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	34	2525	intron_retention	FALSE	non_canonical	0	0	junction_13	1456.49142301152	7395	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAAGAAATGTAAGGG	NA	False	NA	NA	False	NA	NA	NA	121244397	121271693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066_121269075_121269117_121270500_121270595
98926	chr7	-	657	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	25	365	0	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	27	15	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGGCCTGCCCT	NA	False	NA	NA	False	NA	NA	NA	44778160	44775346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
98927	chr8	-	4250	5	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	76	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCCGCCCAATGCGGTG	NA	False	NA	NA	False	NA	NA	NA	20045121	20016472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20016683_20030544_20030854_20035858_20036158_20039781_20039902_20041809
98928	chr19	+	5340	6	NNC	ENSMUSG00000025036.8	novel	5253	10	NA	NA	36	-4	intron_retention	FALSE	canonical	0	0	junction_5	21.7678662252413	34	86	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACATGAAACACTGTCTGC	NA	False	NA	NA	False	NA	NA	NA	46561841	46585330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46577493_46581616
98929	chr4	+	3837	6	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	3832	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	181.270405747877	22	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCTGAATATTTTAAC	NA	False	NA	NA	False	NA	NA	NA	145401086	145430988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145401211_145422720_145422806_145425813_145425941_145426837_145426909_145427474_145429340_145429423
98930	chr6	-	2011	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	65	9	-65	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	14472	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGGGTTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
98931	chr8	+	4567	5	NNC	ENSMUSG00000110605.2	novel	1134	4	NA	NA	-17	3694	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	15.1657508881031	9	84	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTAAATTTTAAAGTATT	NA	False	NA	NA	False	NA	NA	NA	129990104	130013019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_129990206_129993965_129994181_130007503_130007631_130007817_130007879_130008956
98932	chr5	+	315	1	Intergenic	novelGene_961	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	331	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGCGTCCGCCATGCCGGT	NA	False	NA	NA	False	NA	NA	NA	146197808	146198123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
98933	chr16	+	3426	8	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_3	515.967250977843	11	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22930014_22930252_22930343_22930566
98934	chr7	+	1690	9	NIC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	-1	combination_of_known_junctions	FALSE	canonical	2	37	junction_2	3566.89334146327	4	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTCTGCTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	46495266	46505049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46495342_46496812_46496921_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
98935	chr17	+	693	1	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGGGGCAAAGCCAGGCA	2519	False	NA	NA	False	NA	NA	NA	36145696	36146389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36145700_36146400
98936	chr18	-	1573	1	Antisense	novelGene_ENSMUSG00000059040.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCCGTGGACACCGAGGA	NA	False	NA	NA	False	NA	NA	NA	48181353	48179780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_48179800_48181400
98937	chr16	-	3428	1	Genic_Genomic	ENSMUSG00000046962.17	novel	NA	NA	NA	NA	7159	845	mono-exon	FALSE	NA	NA	NA	NA	NA	16	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCAAACTAGGAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	97747139	97743711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_-_97743700_97747100
98938	chr16	-	564	1	Intergenic	novelGene_3794	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
98940	chr13	-	4612	8	NNC	ENSMUSG00000113204.2	novel	1703	7	NA	NA	3	147632	intron_retention	TRUE	non_canonical	0	0	junction_1	37.5303958445005	62	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTTAAAAAATTAATTTCAA	5221	False	NA	NA	False	NA	NA	NA	74765426	74579844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74580646_74724026_74724132_74752775_74755855_74757240_74757302_74757587_74757696_74758318_74758446_74760842_74761068_74765320
98942	chr10	-	670	3	NNC	ENSMUSG00000025362.7	novel	596	3	NA	NA	23	-5	intron_retention	FALSE	non_canonical	0	0	junction_2	7573.5	60	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTACATGGCATCGGAGT	NA	False	NA	NA	False	NA	NA	NA	128462370	128460410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128460506_128461075_128461212_128461931
98944	chr14	+	3631	1	Antisense	novelGene_ENSMUSG00000021972.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCATTGTTAAGGCCTC	NA	False	NA	NA	False	NA	NA	NA	65049062	65052693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_65049100_65052700
98945	chr12	-	1471	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	89	-6	intron_retention	FALSE	canonical	3	36	junction_3	90.4640812698609	1	0	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTATGCAAGGGTTTGTT	7761	False	NA	NA	False	NA	NA	NA	110807272	110774237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807179
98946	chr4	+	2868	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.333151382607	12	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390081	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147395730_147395750_147409230_147409335_147413438_147413566_147415724
98947	chrM	-	1522	1	Antisense	novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000065947.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAAGTTACTGAAGTTAT	-66	True	NA	NA	False	NA	NA	NA	11544	10022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10000_11500
98948	chr17	-	2081	9	NNC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	-7	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	59.4074911101285	72	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCTAGACAGAAAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	26309256	26300220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_26301236_26301849_26302016_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
98950	chr8	-	449	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-6	6	-6	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	26	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAACTTTTT	NA	False	NA	NA	False	NA	NA	NA	108166217	108165768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
98951	chrUn_JH584304v1	-	2966	5	Intergenic	novelGene_4661	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	111	junction_3	350.836500381588	8	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACTACCATAGCTT	NA	False	NA	NA	False	NA	NA	NA	59205	52676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55464_55702_58563
98952	chr15	-	1055	1	Antisense	novelGene_ENSMUSG00000078300.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTATGGTCTTAATCCAT	NA	False	NA	NA	False	NA	NA	NA	12575955	12574900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12574900_12576000
98953	chr9	+	3205	18	NNC	ENSMUSG00000034135.16	novel	6287	25	NA	NA	3	-8672	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	33.8629437872391	7	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAGTCCCCTCAGAGAA	NA	False	NA	NA	False	NA	NA	NA	46066679	46123860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_46066839_46089169_46089295_46089729_46089854_46105460_46105580_46106117_46106229_46106463_46106608_46107090_46107173_46107281_46107392_46109444_46109599_46109849_46110006_46113297_46113369_46115503_46115648_46119219_46119371_46120015_46120142_46120361_46120448_46120852_46120963_46121773_46122114_46122967
98954	chr9	+	711	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	73	225	3	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400582	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
98955	chr5	+	1183	4	Antisense	novelGene_ENSMUSG00000032959.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGCACGCGCACGCCGA	3009	False	NA	NA	False	NA	NA	NA	117420707	117425622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_117421529_117423783_117423886_117424198_117424312_117425475
98956	chrUn_JH584304v1	+	4457	5	Intergenic	novelGene_4677	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	8.22724133595217	1	182	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCCGGCAGCAGAGAGAC	NA	False	NA	-30	True	NA	NA	NA	52690	59672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_54478_54718_54875_55117_55704_56986_58837_59594
98957	chr4	-	3508	5	NNC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	-133	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	125.72067252445	1	104	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCGATGTGTGGTTCTG	-3	True	NA	NA	False	NA	NA	NA	58553761	58435259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_58437635_58486472_58487225_58504621_58504782_58552413_58552603_58553729
98958	chr15	-	4581	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	21	77	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACAAGACCGTTTTCTCG	9381	False	NA	NA	False	NA	NA	NA	22704864	22699825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700656_22701020_22704588_22704680
98959	chrM	-	800	1	Antisense	novelGene_ENSMUSG00000064337.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGCTAGGCAAGGTGTC	5379	False	NA	NA	False	NA	NA	NA	1023	223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_200_1000
98960	chr18	+	3494	1	ISM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	33083	11	12563	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	103	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAACCAAAATTACACTAA	NA	False	NA	NA	False	NA	NA	NA	32233876	32237370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_32233900_32237400
98961	chr16	+	2157	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	8	intron_retention	FALSE	canonical	0	0	junction_10	713.065642139628	12	7	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTTATATAGGTGGTC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931344_22931975
98962	chr5	+	3799	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	779.873476917891	1	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGAGCTAATGAGTTT	NA	False	NA	NA	False	NA	NA	NA	108208609	108256864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208734_108228696_108228887_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241995_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108254657_108254801
98963	chrX	+	2397	10	NIC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	0	5	intron_retention	FALSE	canonical	2	7	junction_1	79.905190733599	80	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTATGACTTGACCTCAAG	4038	False	NA	NA	False	NA	NA	NA	7588487	7594426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_7588618_7589803_7589993_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7593005_7593116_7593326_7593408_7593511_7593585
98964	chr2	-	4298	7	Fusion	ENSMUSG00000078895.5_ENSMUSG00000078881.11_ENSMUSG00000095648.8	novel	1749	4	NA	NA	-24	2171	multi-exon	FALSE	canonical	0	0	junction_4	57.4272486620149	13	167	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGGACAGTTGGAGTTT	NA	False	NA	NA	False	NA	NA	NA	176178600	175881212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_175884942_175886096_175886158_175886363_175886491_175891615_175891671_176060906_176060968_176061160_176061288_176178462
98965	chr19	+	3424	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	17	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1009.02038576477	6	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1486	False	NA	NA	False	NA	NA	NA	44282531	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44293079_44294682
98966	chr7	+	4582	20	NNC	ENSMUSG00000054083.9	novel	3040	21	NA	NA	2319	68727	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	87	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGACGCCTGCGCAGT	NA	False	NA	NA	False	NA	NA	NA	28592695	28661715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28593813_28593925_28594935_28595508_28595661_28596300_28596480_28597272_28597411_28597495_28597676_28597762_28597907_28598046_28598156_28601302_28601459_28603971_28604116_28604649_28604883_28606398_28606489_28610913_28611003_28611665_28611746_28612801_28612879_28614634_28614726_28615584_28615672_28618096_28618216_28618377_28618494_28661443
98967	chr13	-	2842	8	NNC	ENSMUSG00000113145.2	novel	2316	5	NA	NA	-50714	-1111	intron_retention	FALSE	non_canonical	0	0	junction_1	12.6474971307951	53	26	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAATATTTTCTTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	65562955	65502180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65503215_65504317_65504372_65504456_65504543_65510744_65510910_65511056_65512252_65548013_65548075_65548274_65548402_65562835
98968	chr7	-	7912	6	Intergenic	novelGene_3013	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	103	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGCAAGATTTTACTGAAA	6066	False	NA	NA	False	NA	NA	NA	105947937	105638919	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_105641825_105771223_105771585_105819535_105820450_105891298_105892115_105892209_105892303_105945114
98969	chr4	+	2909	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	7	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0632216427369	2	51	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206907	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146207708_146207846_146291416_146291510_146365127_146365259_146368115_146368209_146384326_146384431_146388486_146388614_146390758_146390897_146391646_146393441_146552621
98970	chr12	-	6362	4	Antisense	novelGene_ENSMUSG00000116705.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	26	134	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CATAAGCAAAGTACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	19458872	19347488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_19347890_19451265_19454449_19454651_19454699_19456141
98971	chr15	+	2900	11	Antisense	novelGene_ENSMUSG00000048154.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	10	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCACTGTCTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	98734965	98741706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98735089_98735176_98735313_98737157_98738298_98738440_98738568_98738640_98738776_98739290_98739425_98739622_98739796_98739908_98739985_98740623_98741107_98741231_98741373_98741474
98972	SIRV5	+	4036	15	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3162.75492882327	80	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1104_3302_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
98973	chr15	-	3988	17	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	618.98142136901	1	205	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGCTATGATCTTCT	NA	False	NA	NA	False	NA	NA	NA	96953825	96892705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896417_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96933575_96933651_96953735
98974	chr2	-	4242	2	Intergenic	novelGene_2839	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	17	64	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTC	NA	False	NA	NA	False	NA	NA	NA	175936051	175908694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_175910697_175933811
98975	chrM	+	798	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	518	62	518	-62	mono-exon	FALSE	NA	NA	NA	NA	NA	7	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATAATTCCACTTATTC	80	False	NA	NA	False	NA	NA	NA	10684	11482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10700_11500
98976	chr16	+	3826	8	NIC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-12	34	intron_retention	FALSE	canonical	1	126	junction_1	226.263256461339	21	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTGGCTCTGGAGT	NA	False	NA	NA	False	NA	NA	NA	38383210	38411742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38408666_38411273
98978	chr1	+	2478	1	Intergenic	novelGene_476	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTAAGACAGTCAGTAAGA	NA	False	NA	NA	False	NA	NA	NA	164345106	164347584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_164345100_164347600
98979	chr17	-	2354	18	NIC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-2	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_14	115.587382125275	3	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTGGAGACAGCTTCT	NA	False	NA	NA	False	NA	NA	NA	24746797	24727825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24735478_24735571_24737715_24737774_24738104_24738221_24746739
98980	chr1	+	4115	30	NNC	ENSMUSG00000026074.16	novel	5782	31	NA	NA	280	17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_18	29.2966702380874	63	20	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTGGGAATGGACTCAGAC	NA	False	NA	NA	False	NA	NA	NA	39940669	40064146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_39940735_40001337_40001395_40013086_40013213_40015866_40015978_40019719_40019811_40022298_40022430_40023042_40023098_40024341_40024421_40025784_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046702_40048847_40049024_40049716_40049838_40050809_40051002_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
98982	chr3	+	1549	7	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-13	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1550.82287297207	1	33	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTTTGAAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	89986947	90007911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987100_89994828_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006845
98983	chr5	-	3014	3	NNC	ENSMUSG00000052776.11	novel	1885	7	NA	NA	510	-4138	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	333.5	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAGAATAAAATTTGGC	NA	False	NA	NA	False	NA	NA	NA	121045074	121038456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_121040118_121043658_121044256_121044318
98984	chr9	+	1155	6	Fusion	ENSMUSG00000110919.2_ENSMUSG00000111423.2	novel	348	3	NA	NA	-48	456	multi-exon	FALSE	non_canonical	0	0	junction_3	19858.4526023555	137826	11	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAATGTGCGTCGTCAT	NA	False	NA	NA	False	NA	NA	NA	78152783	78180321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_+_78152947_78153027_78153212_78153639_78153865_78179231_78179395_78179475_78179660_78180085
98986	chr13	-	2137	3	Antisense	novelGene_ENSMUSG00000097709.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGAAGTTAGCCAGTTAG	2083	False	NA	NA	False	NA	NA	NA	3535582	3528312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_3528397_3528482_3529998_3535044
98987	chr16	-	5847	30	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	-23	28344	intron_retention	FALSE	non_canonical	0	0	junction_1	2446.41119131751	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTCCGGAACGCGGCATT	NA	False	NA	NA	False	NA	NA	NA	87292784	87251869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87251990_87255527_87255628_87261619_87261726_87263139_87263243_87266560_87266749_87267239_87267338_87268599_87268731_87268968_87269057_87269994_87270072_87271467_87271562_87272304_87272360_87273599_87273772_87276009_87276676_87277760_87277856_87278599_87278685_87279743_87279903_87279992_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
98988	chr3	-	426	2	Genic_Genomic	ENSMUSG00000047676.7	novel	885	1	NA	NA	-78	-70	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGAGGATTGGTCAGCAG	NA	False	NA	NA	False	NA	NA	NA	149779257	149778364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_149778580_149779046
98989	chr1	+	4055	3	ISM	ENSMUSG00000026349.15	ENSMUST00000153359.2	7640	5	1332	2859	1332	-730	intron_retention	FALSE	canonical	3	50	junction_1	194.5	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCTATTTGTTTTTTAAA	NA	False	NA	NA	False	NA	NA	NA	127725639	127732939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_127725934_127727126_127727291_127729342
98990	chr7	-	2635	14	Fusion	ENSMUSG00000114515.3_ENSMUSG00000030695.17	novel	1549	10	NA	NA	-91	-5	multi-exon	FALSE	canonical	3	12	junction_9	10019.2830354461	38	38	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGAGTCTGTTGTTCAT	8343	False	NA	NA	False	NA	NA	NA	126408371	126394412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126399459_126399531_126399676_126400167_126406855_126407012_126407267_126407409_126408041
98991	chr6	-	6263	8	ISM	ENSMUSG00000051586.18	ENSMUST00000207889.2	9204	32	54563	64615	-1283	979	internal_fragment	FALSE	canonical	3	36	junction_2	13.5300119914875	38	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGGGGAAGAGGGCTGG	NA	False	NA	NA	False	NA	NA	NA	121004007	120973297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_120978657_120979747_120979837_120985955_120986143_120998143_120998318_120999186_120999250_120999344_120999458_121001599_121001797_121003926
98992	chr5	+	5136	3	NNC	ENSMUSG00000015880.14	novel	468	2	NA	NA	-1486	46729	intron_retention	FALSE	non_canonical	0	0	junction_1	0	12	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAATGTTAGGATCACAGT	NA	False	NA	NA	False	NA	NA	NA	45854521	45904617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_45859342_45893073_45893165_45904392
98993	chr2	-	2450	2	ISM	ENSMUSG00000038369.15	ENSMUST00000043126.12	6872	14	19807	24922	-2073	-191	intron_retention	FALSE	canonical	3	130	junction_1	0	2	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGACCCCACCCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	155262896	155257497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_155257849_155260797
98994	chr2	-	4382	1	Intergenic	novelGene_2725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCCTACAGGAGGTGTA	NA	False	NA	NA	False	NA	NA	NA	150120484	150116102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_150116100_150120500
98995	chr2	-	6006	23	Antisense	novelGene_ENSMUSG00000027678.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	244	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCGCGGGGGCCGCCGGG	NA	False	NA	NA	False	NA	NA	NA	165913838	165834550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_165834678_165876803_165876881_165889372_165889480_165889701_165889874_165890372_165890470_165891980_165892159_165893229_165893416_165893531_165893626_165894273_165894414_165894671_165894820_165896199_165896584_165896696_165897558_165899006_165899138_165900559_165900755_165901280_165901401_165901618_165901725_165902664_165902847_165907675_165907969_165909478_165909564_165910245_165910468_165911123_165911286_165911717_165911868_165912049
98996	chr4	+	3000	6	Antisense	novelGene_ENSMUSG00000045699.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTTCCTCAGAGCCACT	NA	False	NA	NA	False	NA	NA	NA	146912356	146994047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_146913220_146913556_146914361_146976152_146977116_146982168_146982271_146991975_146992071_146993874
98997	chr2	+	1612	3	NNC	ENSMUSG00000086454.8	novel	770	3	NA	NA	-2	93	intron_retention	FALSE	non_canonical	0	0	junction_2	92	2	80	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTAGAAGTTTCCACTT	NA	False	NA	NA	False	NA	NA	NA	104389526	104399270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104389830_104390068_104390321_104398213
98998	chr17	+	688	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	844	317	844	-317	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCTACACTGACTGGCTCA	NA	False	NA	-18	True	NA	NA	NA	40158087	40158775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40158100_40158800
98999	chr11	+	1919	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	-99	-73	99	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	236	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAGAAAAGAACACTTGGGA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
99000	chr17	-	2275	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	3473.43221583849	70	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882074_45882690_45882838_45884092
99001	chr13	-	5950	6	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7263	300	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	29.2136954184163	53	116	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGACTTAGCTCCATT	1331	False	NA	NA	False	NA	NA	NA	67010198	66997414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66999046_66999549_67000944_67002549_67002611_67002809_67005487_67005568_67005646_67010088
99003	chr3	+	4389	3	Antisense	novelGene_ENSMUSG00000105180.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	31	62	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTACATATACATACACAT	NA	False	NA	NA	False	NA	NA	NA	139726017	139831055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_139726982_139729389_139731524_139829764
99004	chr17	+	4464	11	NNC	ENSMUSG00000116953.2	novel	1844	12	NA	NA	7	-49	intron_retention	FALSE	canonical	3	28	junction_6	73.2311409169624	31	78	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTAAAAGTCTGGGTTCT	NA	False	NA	NA	False	NA	NA	NA	15199145	15211118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15205178_15206035_15206830_15206979_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
99006	chr16	+	1697	1	FSM	ENSMUSG00000116875.2	ENSMUST00000231737.2	969	1	-68	-660	-68	660	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAATCTACCAA	NA	False	NA	NA	False	NA	NA	NA	24348075	24349772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_24348100_24349800
99007	chr11	+	5383	27	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-21	5132	intron_retention	FALSE	non_canonical	0	0	junction_23	54.7578450784281	3	110	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771157	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
99008	chr6	+	6648	8	FSM	ENSMUSG00000029823.17	ENSMUST00000160430.3	3906	8	-1614	-1128	-1614	787	multi-exon	FALSE	canonical	3	96	junction_6	16.4267079688499	2651	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGGTGTTGAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	38545422	38584089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_38547540_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211
99009	chr2	-	5061	28	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	46	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCGGCGGGGGGCGGGCC	NA	False	NA	NA	False	NA	NA	NA	52001589	51962850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51962879_51963148_51963266_51966091_51966186_51966988_51967120_51967203_51967298_51968340_51968533_51971237_51971329_51972674_51972814_51975036_51975189_51978657_51978772_51979531_51979706_51980188_51980295_51982051_51982115_51982289_51982390_51983509_51983602_51984600_51984675_51985833_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993710_51994557_51994599_51995444_51995650_51996912_51997013_51997649_51997768_51998449_51998603_51999202_51999413_51999920
99010	chr9	-	4720	28	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.566557723732531	81	39	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCGAGCTCATGCTGGACG	6448	False	NA	NA	False	NA	NA	NA	72656867	72569850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569907_72584606_72584674_72584772_72584813_72593341_72593395_72616391_72616444_72617758_72617820_72619446_72619547_72625497_72625667_72628582_72628699_72628776_72628944_72632298_72632365_72633693_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648968_72649932_72650041_72650819_72650917_72653686_72653759_72654404_72654619_72654668
99011	chr1	-	5584	1	Intergenic	novelGene_464	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGAGGCCCATTGGACA	NA	False	NA	NA	False	NA	NA	NA	145675355	145669771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_145669800_145675400
99013	chr3	+	884	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7571.83389278978	7	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	NA	False	NA	NA	NA	137570349	137572585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570875_137570972_137571280_137571395_137571771_137571896_137572143
99014	chr1	-	1118	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGCGGCGAAGGTGGCT	9063	False	NA	NA	False	NA	NA	NA	86458416	86454527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451_86457525_86457684
99015	chr8	-	4478	4	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	72	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGCCGCCATCTTTGCC	NA	False	NA	NA	False	NA	NA	NA	20045711	20016596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20016683_20030544_20030923_20035859_20036095_20041932
99016	chr2	-	2810	19	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	0	-7	intron_retention	FALSE	non_canonical	0	0	junction_7	139.023135120617	1	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAACAAAACTAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	120234559	120185803	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187020_120190014_120190046_120190519_120190576_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
99017	chr17	+	1512	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	239	98	239	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	17	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	7	True	NA	NA	NA	40157482	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157500_40159000
99018	chr11	-	491	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	53	515	-2	-4	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGAGAGCTGGTCTTCT	NA	False	NA	NA	False	NA	NA	NA	97673210	97668867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
99019	chr1	-	3799	11	NNC	ENSMUSG00000089872.11	novel	3995	15	NA	NA	-8	708	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	17.3274348938324	1	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTAGAGTCCACCTTAG	NA	False	NA	NA	False	NA	NA	NA	190643952	190529936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_190530939_190531209_190532779_190541079_190541213_190542266_190542319_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
99021	chr1	+	675	1	Antisense	novelGene_ENSMUSG00000102070.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTAGGCCATATAAGATA	NA	False	NA	NA	False	NA	NA	NA	24653959	24654634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24654000_24654600
99022	chr3	-	4702	5	NIC	ENSMUSG00000027506.16	novel	6317	6	NA	NA	-19	28	intron_retention	FALSE	canonical	3	1409	junction_1	611.345391329648	3	125	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCTAGTTTGATCTTTC	NA	False	NA	NA	False	NA	NA	NA	9069518	8995819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
99023	chr16	-	546	1	Intergenic	novelGene_3682	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212021	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99024	chr7	-	1569	4	NIC	ENSMUSG00000030695.17	novel	796	7	NA	NA	-13	-115	intron_retention	FALSE	canonical	3	19619	junction_3	259.408301075094	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTCCACCTTTCCCTGCT	NA	False	NA	NA	False	NA	NA	NA	126398355	126395325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126395928_126396025_126396721_126396815_126396949_126398216
99025	chr2	+	3789	14	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	-166	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1302.96676493783	2	189	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTAGTGTCTGACTCCTC	NA	False	NA	NA	False	NA	NA	NA	162901102	162926602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162901178_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916317_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922935_162924414_162924620_162925085
99026	chr4	-	2523	6	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	61	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTGAAGTTTCACAACAG	NA	False	NA	NA	False	NA	NA	NA	145178232	145160317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145160382_145163610_145163800_145173037_145173144_145173290_145173339_145176033_145176312_145176394
99027	chr2	-	5057	24	NNC	ENSMUSG00000033808.17	novel	2822	19	NA	NA	-57046	-22644	intron_retention	TRUE	non_canonical	0	0	junction_1	0	7	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCTGCAGATAGATCGA	NA	False	NA	NA	False	NA	NA	NA	120291640	120234428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120235539_120236744_120236808_120241913_120242023_120249836_120249964_120252502_120252684_120254177_120254221_120258207_120258277_120259280_120259376_120261032_120261215_120261419_120261580_120264106_120264337_120265741_120265868_120267099_120267181_120269778_120269923_120271982_120272081_120274617_120274718_120276776_120277022_120278866_120278933_120281300_120281377_120283071_120283147_120286471_120286586_120287686_120287799_120288520_120288627_120290295
99028	chr12	-	2266	5	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-2	intron_retention	FALSE	canonical	3	7551	junction_3	376.663643055711	344	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111638014_111638199_111638408_111638663
99029	chr11	+	2536	7	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	754.535489924467	1	98	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	NA	NA	NA	20151438	20176856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647_20175681_20175964
99030	chr5	+	321	1	Intergenic	novelGene_954	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1051	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGCGTCCGCCATGCCGGT	NA	False	NA	NA	False	NA	NA	NA	146197802	146198123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
99032	chr17	+	5119	1	Intergenic	novelGene_236	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	91	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	NA	False	NA	NA	False	NA	NA	NA	40489659	40494778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40489700_40494800
99033	chr11	-	702	5	Antisense	novelGene_ENSMUSG00000064780.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2363	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCGGCCTCCGCCGGA	NA	False	NA	NA	False	NA	NA	NA	48694757	48691186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_48691398_48692487_48692662_48693099_48693246_48694228_48694325_48694682
99034	chr17	+	2640	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-11	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	1056.53466104998	2	39	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGAAACAACCGTGTCTG	NA	False	NA	NA	False	NA	NA	NA	35460769	35472651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35469162_35470204_35470355_35471722_35471833_35471958_35472085_35472182_35472331_35472448
99036	chr13	+	3677	14	Antisense	novelGene_ENSMUSG00000113140.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	9	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACGGGCTGGGGGATACGT	NA	False	NA	NA	False	NA	NA	NA	17892340	17978072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_17893496_17893939_17894391_17895672_17895879_17901704_17901837_17902651_17902769_17913501_17913580_17913675_17913778_17924841_17924899_17926255_17926444_17937686_17937859_17939537_17939679_17941020_17941192_17946885_17947543_17978022
99037	chr2	+	870	1	FSM	ENSMUSG00000082895.2	ENSMUST00000120702.2	885	1	77	-62	77	62	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGCTGAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28367254	28368124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28367300_28368100
99038	chrM	+	1647	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-269	0	-269	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	20	False	NA	NA	False	NA	NA	NA	9897	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
99039	chr17	-	2357	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	1	intron_retention	FALSE	non_canonical	0	0	junction_6	4341.45558079315	6	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881433_45881657_45881726_45881943_45882104_45882338_45882546_45882690_45882859_45884146
99040	chrX	-	873	7	NNC	ENSMUSG00000031388.15	novel	1031	8	NA	NA	3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	396.932403985028	23	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGGAAATTTGTGAATGTG	NA	False	NA	NA	False	NA	NA	NA	72965509	72960500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72960893_72961448_72961534_72963107_72963153_72963359_72963405_72964588_72964648_72964877_72964977_72965361
99042	chr12	-	1865	5	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-2	intron_retention	FALSE	canonical	3	7560	junction_2	358.961958290847	2615	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111638408_111638663
99043	chr16	+	564	1	Intergenic	novelGene_3795	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
99044	chr5	+	2217	8	NNC	ENSMUSG00000029283.18	novel	2961	12	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	85.9330541521618	2	46	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	NA	False	NA	NA	NA	107112242	107132298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_107112292_107112798_107112921_107121814_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
99045	chr15	+	975	4	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2259	-5024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	76	4	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGCGCCCGCTCCGAGCC	NA	False	NA	NA	False	NA	NA	NA	98829946	98832319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98830446_98830575_98830722_98830853_98831079_98832214
99046	chr2	+	481	6	NNC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2601.57987384589	14	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAATGGGCTTGGCTGCTT	5797	False	NA	NA	False	NA	NA	NA	32851726	32854052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_32851852_32852060_32852110_32853021_32853079_32853508_32853596_32853752_32853866_32854002
99047	chr10	+	3030	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1898.57666343468	66	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722_81018081_81018124
99049	chr13	+	2517	3	Antisense	novelGene_ENSMUSG00000072066.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGGAACAAGGCACACTAA	NA	False	NA	NA	False	NA	NA	NA	62750914	62771961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_62753193_62755184_62755314_62771851
99050	SIRV1	-	1348	5	NIC	SIRV1A	novel	1300	4	NA	NA	-1	0	intron_retention	FALSE	canonical	3	1547	junction_4	1804.06430040617	45	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10641	1006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV1_-_1485_6337_6814_7552_7815_10282_10367_10593
99051	chr4	+	5239	35	NNC	ENSMUSG00000028763.19	novel	14187	97	NA	NA	-22545	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_34	15.7881739281704	60	75	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAGATGTCTCCTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	137273936	137297937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_137274005_137275331_137275484_137275656_137275802_137276842_137276989_137277289_137277432_137277651_137277804_137278115_137278258_137278374_137278516_137279102_137279238_137279405_137279588_137280089_137280286_137280485_137280666_137280906_137281168_137282399_137282605_137283950_137284049_137284484_137284752_137286123_137286234_137286400_137286549_137286624_137286742_137287723_137287827_137288990_137289136_137289217_137289318_137289472_137289583_137289692_137289802_137291301_137291401_137291655_137291878_137292080_137292326_137292639_137292812_137292927_137293051_137293144_137293202_137295437_137295514_137295611_137295691_137295845_137295914_137296072_137296116_137297436
99052	chr15	-	2586	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	-16	344	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	758.899896211046	2	82	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGACCTCTGTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	11399703	11383746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389818_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
99053	chr4	+	2699	17	NNC	ENSMUSG00000028587.19	novel	670	3	NA	NA	3086	-259	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	196.687718461906	3	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTATTTTCCATTATTT	8358	False	NA	NA	False	NA	NA	NA	108439736	108471771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108439855_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454662_108456557_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
99054	chr15	-	6652	36	NNC	ENSMUSG00000036606.18	novel	6497	38	NA	NA	-432	-40	intron_retention	FALSE	canonical	0	0	junction_14	90.7169448429159	16	147	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCGTGATTGTAAATCCAATA	NA	False	NA	NA	False	NA	NA	NA	89055323	89039791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89040589_89040700_89040776_89041195_89041272_89041388_89041454_89041594_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044158_89044363_89044465_89044570_89044711_89044805_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049905_89050033_89050108_89050698_89050786_89050970_89051143_89052231_89054771_89054821_89055269
99056	chr8	+	2087	15	NNC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-50604	-2756	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	10	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCGCGCGCTCACGTCG	NA	False	NA	NA	False	NA	NA	NA	96482767	96534073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96482922_96483969_96484120_96486725_96486878_96487129_96487253_96487949_96488070_96489616_96489857_96491083_96491224_96491632_96491728_96498608_96498803_96500059_96500113_96500196_96500268_96501257_96501357_96501906_96502015_96515257_96515535_96533962
99057	chr4	+	2476	10	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-242718	-5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	40.4532957347417	4	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395015	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395148_147534439_147534577_147578832_147578926_147637750_147637884_147639766_147639863_147661528_147661587_147665698_147665826_147667290_147667436_147667927_147668413_147668580
99058	chrX	+	1292	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-57	-25	57	mono-exon	FALSE	NA	NA	NA	NA	NA	14	42	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
99059	chr1	+	3482	22	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	-4	34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	106.766152585304	7	52	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTTTTTTTTTTTTTT	8295	False	NA	NA	False	NA	NA	NA	191307849	191353792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191313959_191314006_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191327531_191327731_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
99060	chr17	+	1412	10	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-4	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	982.862260045741	2	46	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCTGTGGTGTCTGTAA	NA	False	NA	NA	False	NA	NA	NA	35460776	35472663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462309_35463429_35463525_35465912_35466097_35467926_35468046_35470222_35470359_35471734_35471833_35471939_35472085_35472182_35472331_35472448
99061	chrM	+	1240	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	584	0	-584	mono-exon	FALSE	NA	NA	NA	NA	NA	3	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCCACTTCTATAACAGCT	-4	True	NA	4	True	NA	NA	NA	11741	12981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13000
99062	chr15	+	4320	2	Antisense	novelGene_ENSMUSG00000009575.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	102	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCCAAGTATGGTGACATG	NA	False	NA	NA	False	NA	NA	NA	103134873	103139535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_103136796_103137137
99063	chr17	-	2272	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5	243	5	-243	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	1050	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCTCCTGGAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	45884192	45878943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99064	chrM	+	2047	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-465	0	465	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTTTACGAGCCGTAGC	-3	True	NA	22	True	NA	NA	NA	1093	3140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3100
99065	chr19	+	2622	1	Genic_Genomic	ENSMUSG00000100141.2	novel	NA	NA	NA	NA	-287	1062	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	9584180	9586802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_9584200_9586800
99066	chr17	+	5660	24	NNC	ENSMUSG00000015127.15	novel	4779	15	NA	NA	7	5683	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	26.5518004971571	5	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGTCACGTGAGTGACAGC	NA	False	NA	NA	False	NA	NA	NA	25407377	25459100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25407467_25408439_25408650_25418740_25418918_25420015_25420150_25424572_25424709_25427062_25427181_25428527_25428613_25429777_25429861_25432020_25432081_25437551_25437730_25447556_25447641_25449180_25449384_25449494_25449750_25450685_25453697_25453781_25453863_25453952_25454085_25454154_25454239_25454318_25454431_25454504_25454602_25454678_25454761_25454827_25454884_25458747_25458816_25458886_25458944_25459032
99067	chr7	+	5060	1	Intergenic	novelGene_3018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATGCTGTATTAAATACT	1743	False	NA	NA	False	NA	NA	NA	108028614	108033674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_108028600_108033700
99068	chr7	-	750	6	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-3	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	5785.23556650894	1	15	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTTGAACAAAGACAAGG	8419	False	NA	NA	False	NA	NA	NA	99132861	99128106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99131023_99131776_99131908_99132798
99069	chr7	-	920	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	0	0	intron_retention	TRUE	canonical	3	749	junction_2	31417.7626935252	4971	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	NA	False	NA	NA	NA	45109263	45107367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107708_45107958_45108082_45108507_45108655_45108953
99072	chr1	+	3049	21	NNC	ENSMUSG00000026074.16	novel	5782	31	NA	NA	-12833	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	31.8133226809147	1	31	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCACCATCGGTGCTAGGA	545	False	NA	NA	False	NA	NA	NA	40025921	40064124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_40025961_40028129_40028203_40029248_40029460_40036180_40036343_40039047_40039135_40039783_40039910_40042916_40043148_40043966_40044074_40045830_40045983_40046592_40046702_40048847_40049024_40049716_40049838_40053265_40053384_40053686_40053858_40056269_40056414_40058703_40058839_40060243_40060345_40061864_40062015_40062519_40062680_40063469_40063610_40063788
99073	chr5	+	2099	6	NIC	ENSMUSG00000029430.14	novel	2377	7	NA	NA	-2	-1158	intron_retention	FALSE	canonical	3	11744	junction_1	1425.26732931054	27941	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTGAATCATCCCTTGC	473	False	NA	NA	False	NA	NA	NA	129097263	129100229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129099255_129099438_129099610_129099837
99075	chr5	+	3432	18	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGCGCCAAAGTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	31311046	31337225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31311089_31311536_31311637_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31317206_31317291_31317436_31323228_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331111_31331436_31331577_31331839_31336987
99076	chr5	+	4202	13	NIC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	-1	616	intron_retention	FALSE	canonical	3	156	junction_4	18.7592569741507	9	107	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTCCCAAAGCTAAAGC	NA	False	NA	NA	False	NA	NA	NA	24599404	24615668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24612454_24613565_24613817_24614351
99077	chr11	-	5198	2	Intergenic	novelGene_2316	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	128	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450415_57450507
99078	chr9	+	717	5	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	3638	147	-122	-147	3prime_fragment	FALSE	canonical	3	17449	junction_1	1251.29452967717	117	16	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64084294	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
99079	chr19	-	1428	5	Antisense	novelGene_ENSMUSG00000025066.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGACCTCGCCCCGGGG	NA	False	NA	NA	False	NA	NA	NA	47723968	47720198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_47720264_47721070_47721126_47721221_47721430_47721957_47722351_47723261
99080	chrM	+	1578	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-290	90	-290	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACGAGAACTAACACTA	-1	True	NA	NA	False	NA	NA	NA	9876	11454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
99081	chr6	+	3169	7	NNC	ENSMUSG00000029993.17	novel	948	8	NA	NA	3	-21	intron_retention	FALSE	non_canonical	0	0	junction_5	1076.66795665557	2	99	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCTTCCTCCAGAATGA	NA	False	NA	NA	False	NA	NA	NA	86986873	87005415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_87000171_87002454_87002643_87005276
99082	chr14	-	5380	12	Fusion	ENSMUSG00000022159.17_ENSMUSG00000022160.19	novel	2159	9	NA	NA	-100	-14400	intron_retention	FALSE	non_canonical	0	0	junction_1	51.7463617118462	28	75	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAAAATCGGCTTGGGGG	NA	False	NA	NA	False	NA	NA	NA	52534319	52516606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr14_-_52516690_52516843_52517112_52517275_52517345_52523114_52523359_52524184_52524445_52524755_52524987_52528215_52528297_52528929_52529674_52529974_52530139_52530655_52530765_52530863_52533644_52533972
99083	chr5	-	3394	1	FSM	ENSMUSG00000098830.3	ENSMUST00000183676.3	62	1	-2263	-1069	-2263	1069	mono-exon	FALSE	NA	NA	NA	NA	NA	2	64	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACTTCAAGTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	34058578	34055184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_34055200_34058600
99084	chr17	-	702	3	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4390	6	855	-6	3prime_fragment	FALSE	canonical	3	10930	junction_2	637.5	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	6	True	NA	NA	NA	45879807	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783
99085	chr9	-	1713	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4690.5121168554	23	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386583_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
99086	chr8	+	2954	8	NNC	ENSMUSG00000060038.15	novel	1333	9	NA	NA	-68	1696	intron_retention	FALSE	non_canonical	0	0	junction_2	94.2852813842876	5	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGAATGCCCAATCCTTA	NA	False	NA	NA	False	NA	NA	NA	85798861	85803487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85799246_85799923_85800046_85800128_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
99087	chr15	+	2608	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTGGCGGCGAGGCTGAGA	52	False	NA	NA	False	NA	NA	NA	36771169	36793788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793724
99089	chr9	+	711	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	73	225	3	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400582	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
99090	chr5	+	2268	17	ISM	ENSMUSG00000005672.13	ENSMUST00000005815.7	5214	21	40407	2047	4788	1819	3prime_fragment	FALSE	canonical	3	392	junction_5	221.583364673434	10	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCACTGTGATTCCGCCTT	NA	False	NA	NA	False	NA	NA	NA	75776021	75815335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
99091	chr11	+	4689	30	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	7	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	55.721897360213	106	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771185	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84771983_84772080_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
99092	chr1	-	5718	31	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	3892	1	intron_retention	FALSE	non_canonical	0	0	junction_1	437.139520061959	12	83	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGACGTCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71676555	71624680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625290_71634889_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410
99093	chr12	+	2399	6	NNC	ENSMUSG00000079179.10	novel	823	8	NA	NA	3	1713	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_5	72.1703540243499	38	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGACTGTTTCATTCAA	NA	False	NA	NA	False	NA	NA	NA	3285528	3293123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521
99094	chr16	-	564	1	Intergenic	novelGene_3796	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99095	chr10	+	4205	10	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGGATGGGGAGGAGCT	NA	False	NA	NA	False	NA	NA	NA	62647540	62675387	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955
99096	chr12	-	3196	7	Genic_Genomic	ENSMUSG00000113532.2	novel	127	1	NA	NA	-62	280327	multi-exon	TRUE	non_canonical	0	0	junction_1	18.1995115929583	15	36	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACATACTGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	23476946	23196430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_23197221_23197657_23198398_23337126_23337410_23445500_23446506_23447833_23447895_23448096_23448224_23476756
99097	chr11	-	1658	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	5	330	5	-330	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	5	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915325	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
99098	chrM	+	2617	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-1035	0	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	5	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	-3	True	NA	22	True	NA	NA	NA	1093	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
99099	chr7	+	2153	21	ISM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	8	7581	-1	-2167	5prime_fragment	FALSE	canonical	0	0	junction_1	283.787843291428	13	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGACCTCATCTACCTCA	2628	False	NA	NA	False	NA	NA	NA	13012759	13037769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725
99100	chr17	-	1623	4	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	31	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	482.500662060571	4	40	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050152	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007281_7008361_7008455_7050067
99101	chr3	-	8162	45	NNC	ENSMUSG00000032826.20	novel	14305	46	NA	NA	10	-103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	9.14831308118633	53	38	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGGGCATGTATTAGTT	2145	False	NA	NA	False	NA	NA	NA	127202698	126715365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_126717621_126722313_126722497_126723370_126723536_126723646_126723731_126726586_126726876_126728174_126728428_126730268_126730413_126731386_126731519_126733720_126733796_126746117_126746171_126746825_126746949_126748632_126748759_126749518_126749748_126750904_126751002_126752531_126752737_126753301_126753514_126755899_126756055_126758586_126758812_126769699_126769804_126770493_126770597_126775448_126775594_126781792_126781866_126791501_126791601_126792525_126792625_126796326_126796426_126797593_126797693_126804502_126804701_126806321_126806421_126806887_126806987_126810464_126810663_126816940_126817040_126822867_126822967_126823123_126823223_126825764_126825963_126832395_126832495_126840373_126840473_126841830_126841930_126846336_126846523_126850641_126850741_126871150_126871250_126873546_126873646_126898409_126898512_127041782_127041882_127132780_127132842_127202493
99102	chr18	+	305	3	FSM	ENSMUSG00000024608.12	ENSMUST00000142980.2	662	3	-31	388	-30	10	multi-exon	FALSE	canonical	3	20921	junction_1	3556	16	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCAAGGAGTTGGGCATCA	NA	False	NA	-47	True	NA	NA	NA	60907706	60910103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60907759_60909472_60909624_60910001
99103	chr10	-	4380	2	Intergenic	novelGene_3385	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	18	106	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTCTGGCTGAGGGTA	NA	False	NA	NA	False	NA	NA	NA	7493215	7297043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_7297255_7489046
99104	chr9	+	3338	26	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	793.504887445566	7	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACCAAAGAGTAGTTCAAT	NA	False	NA	NA	False	NA	NA	NA	72569718	72655440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638236_72642467_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
99105	chr4	+	2598	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-255	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.962960031426	2	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAACCAATTCAGAAAAA	924	False	NA	NA	False	NA	NA	NA	145237358	145265503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237383_145257381_145257486_145261385_145261513_145263160
99106	chr13	-	841	2	NNC	ENSMUSG00000113311.2	novel	661	2	NA	NA	-582	-2213	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTATCTCTTAAGGTA	8414	False	NA	NA	False	NA	NA	NA	74555438	74554514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74554872_74554954
99108	chr3	+	2373	4	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	3607	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	666.677999903668	2	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTTAAAATAACCAGTACA	NA	False	NA	NA	False	NA	NA	NA	90391592	90395674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90392401_90393839_90394405_90394533_90394625_90394765
99109	chr8	+	11361	39	NNC	ENSMUSG00000056608.15	novel	9419	38	NA	NA	-27	1	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_8	6.76576849062234	7	189	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGATGTCAGCCTCCCT	4148	False	NA	NA	False	NA	NA	NA	91635214	91781137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_91635264_91658876_91660491_91683010_91683343_91699752_91699865_91703548_91703696_91704107_91704177_91704255_91704312_91705509_91705628_91710089_91710177_91710895_91711034_91712686_91712809_91716057_91716302_91721087_91721265_91723467_91723612_91723704_91723961_91725123_91725335_91728247_91728444_91732341_91732510_91733158_91733339_91735347_91735459_91737239_91737437_91737883_91738084_91741726_91741887_91742462_91742553_91748393_91748498_91749442_91749561_91750164_91750223_91752007_91752051_91753295_91753516_91757109_91757313_91759966_91760873_91761532_91761694_91762953_91763179_91764034_91764204_91767675_91767816_91768712_91768908_91769469_91769599_91775733_91775839_91777730
99110	chr18	-	3585	13	NNC	ENSMUSG00000033871.15	novel	3330	13	NA	NA	-1	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	14.0198272298754	3	16	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACAAATGT	3292	False	NA	NA	False	NA	NA	NA	61533503	61431227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_61431855_61432656_61432812_61435689_61435812_61437778_61437855_61440277_61441086_61442103_61442166_61442716_61442754_61443477_61443706_61443756_61444580_61445224_61445342_61448807_61449021_61456205_61456380_61533360
99111	chr16	+	6267	7	ISM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	-46	-194	-46	38	intron_retention	FALSE	canonical	3	530	junction_1	71.3699283078431	28	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7024	False	NA	NA	False	NA	NA	NA	38379013	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582
99112	chr13	+	2016	10	NNC	ENSMUSG00000021555.16	novel	3793	23	NA	NA	17	-1166	intron_retention	FALSE	canonical	2	11	junction_8	327.030069973186	8	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTTTCAAGATCTCTGT	1352	False	NA	NA	False	NA	NA	NA	59733250	59764592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59748886_59755063_59755127_59755201_59755246_59755958_59756010_59760450_59760630_59764557
99113	chr9	-	6726	15	NNC	ENSMUSG00000032498.10	novel	2394	17	NA	NA	3	2235	intron_retention	FALSE	canonical	3	11	junction_7	127.4501102873	28	179	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTACTTCTTTTGAACC	NA	False	NA	NA	False	NA	NA	NA	111100611	111055060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_111060134_111062390_111062455_111064974_111065084_111068786_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
99114	chr11	+	1816	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	4	-73	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	148	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
99115	SIRV5	-	1923	16	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-8585	1070	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1307	2	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGTAAAACACTCATGGC	NA	False	NA	NA	False	NA	NA	NA	10991	1107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV5_-_1149_1986_2034_2119_2157_2270_2316_3298_3403_3481_3643_5379_5448_5538_5626_6110_6169_6326_6452_6825_6957_7143_7305_7678_7762_7869_8381_8453_8590_10863
99116	chr15	+	1337	4	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98453	-152	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	65	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGGGGCAGATAGTGC	NA	False	NA	NA	False	NA	NA	NA	98829318	98935839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98829843_98848555_98848744_98934966_98935243_98935490
99117	chr3	-	5098	11	NIC	ENSMUSG00000055436.19	novel	1643	13	NA	NA	-3164	-135	intron_retention	FALSE	canonical	3	70	junction_10	226.143671147348	4	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCAAACGTCATGAAACTT	NA	False	NA	NA	False	NA	NA	NA	157732470	157717274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_157717841_157717946_157718086_157718416_157718534_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157728879
99118	chr17	+	3346	2	Intergenic	novelGene_238	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_1	0	2	104	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCAACAAGACCGTTTT	NA	False	NA	NA	False	NA	NA	NA	40489659	40494834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40489888_40491716
99119	chr8	+	1281	2	ISM	ENSMUSG00000109704.2	ENSMUST00000211253.2	1405	3	284	7	284	-7	3prime_fragment	FALSE	canonical	1	1	junction_1	0	6	11	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGAGTTGCCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	36626916	36628735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_36627001_36627538
99120	chr11	-	1579	6	NNC	ENSMUSG00000048076.15	novel	1800	5	NA	NA	43	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	893.804989916704	13	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGGCTTGTGTGTCAGTG	1890	False	NA	NA	False	NA	NA	NA	59119053	59102238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59102635_59102813_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
99121	chr5	+	1575	1	Antisense	novelGene_ENSMUSG00000106864.4_AS_novelGene_ENSMUSG00000101678.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGGGAATTTCAGCGAC	NA	False	NA	NA	False	NA	NA	NA	31335908	31337483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31335900_31337500
99122	chrX	+	4505	1	Intergenic	novelGene_3940	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	68	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTCTTAACCACCCTACT	NA	False	NA	NA	False	NA	NA	NA	63977041	63981546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63977000_63981500
99123	chr4	+	2490	10	Fusion	ENSMUSG00000082248.2_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-47	0	multi-exon	FALSE	non_canonical	0	0	junction_1	40.4532957347417	4	30	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147527880	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147527997_147578832_147578926_147637751_147637884_147639766_147639865_147651490_147651652_147661528_147661587_147665698_147665826_147667290_147667436_147667927_147668409_147668576
99124	chr18	-	3493	13	NIC	ENSMUSG00000044201.11	novel	1945	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	155	junction_12	21.9108040321056	6	100	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2792	False	NA	NA	False	NA	NA	NA	34884586	34866045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34866447_34866629_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
99125	chr2	+	1379	11	NNC	ENSMUSG00000042369.9	novel	1898	10	NA	NA	384	-65	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	105.605350243252	1	20	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCTTCCTTAGAGAAATA	NA	False	NA	NA	False	NA	NA	NA	76200711	76214047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210744_76210813_76210910_76213798
99126	chr14	+	6720	10	Intergenic	novelGene_595	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	196	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCCGCTCCCACCTGCTG	NA	False	NA	NA	False	NA	NA	NA	65055889	65187305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_65061147_65063048_65063142_65064220_65064319_65066036_65066120_65089335_65089491_65098967_65099075_65125022_65125108_65134093_65134576_65140687_65140770_65187027
99127	chr5	+	1866	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGCGACTCGACAGTGG	NA	False	NA	NA	False	NA	NA	NA	142888877	142892462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320_142891447_142892404
99128	chr13	+	7890	17	FSM	ENSMUSG00000021756.13	ENSMUST00000183663.8	8678	17	49	739	7	-739	multi-exon	FALSE	canonical	3	291	junction_16	42.4389267065038	322	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTTTTCTGTCTG	NA	False	NA	NA	False	NA	NA	NA	112600652	112645881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112624242_112624404_112625037_112625193_112627016_112627177_112630122_112630206_112631112_112631324_112631723_112631907_112633818_112633921_112634255_112634403_112635282_112635424_112637646_112637744_112639324_112639407_112640238
99129	chr6	+	3134	9	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	0	1648	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2196.24399543858	8	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAACCCCTTTATATGTT	5872	False	NA	NA	False	NA	NA	NA	67243994	67262943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244195_67244325_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
99130	chr15	-	3545	10	NIC	ENSMUSG00000022283.16	novel	2817	15	NA	NA	-1149	-1	intron_retention	FALSE	canonical	3	5069	junction_8	501.072430140507	6	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATGGTTATGCTTTTATT	5855	False	NA	NA	False	NA	NA	NA	36603739	36595905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598557_36599195_36599287_36599448_36600933_36601113_36601252_36601558_36601654_36603089
99132	chr12	+	3779	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	-61	-2209	-61	3	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTATTTGTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	105976425	106043688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
99133	chr11	+	3264	22	NNC	ENSMUSG00000087291.2	novel	3941	4	NA	NA	-12634	2323	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	35	50	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACCGGCAGACCGACGGG	NA	False	NA	NA	False	NA	NA	NA	3467522	3489179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_3467827_3470750_3470916_3471815_3471969_3472460_3472581_3472775_3472954_3474635_3474729_3474883_3474939_3475033_3475207_3476164_3476243_3476328_3476481_3479439_3479613_3479766_3480209_3480366_3480442_3481044_3481118_3481201_3481521_3482408_3482509_3482597_3482679_3482763_3482855_3483374_3483527_3487325_3487437_3487635_3487742_3489109
99134	chr10	-	3362	19	Antisense	novelGene_ENSMUSG00000040054.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	62	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGTGGCCAAAGGGTAGA	NA	False	NA	NA	False	NA	NA	NA	127958220	127932246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127932391_127944760_127944901_127946623_127947216_127948535_127948632_127949326_127949549_127950200_127950652_127950892_127950954_127951928_127952037_127952172_127952280_127952417_127952625_127954421_127954523_127954821_127954888_127955136_127955366_127955488_127955746_127956977_127957195_127957459_127957533_127957666_127957848_127957934_127957995_127958170
99135	chr15	+	1799	1	Intergenic	novelGene_3230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGAATGAAGCGAAGATC	NA	False	NA	NA	False	NA	NA	NA	22699839	22701638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22699800_22701600
99136	chrM	+	916	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	228	0	-228	mono-exon	FALSE	NA	NA	NA	NA	NA	3	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTTCATACCTCAAAGCAA	-2	True	NA	87	True	NA	NA	NA	14144	15060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15100
99137	chr4	-	4392	3	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	33	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAGAATGATGAAATGGCA	NA	False	NA	NA	False	NA	NA	NA	145180372	145159011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159149_145176033_145176404_145176487
99139	chr19	+	4128	3	Antisense	novelGene_ENSMUSG00000046138.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	111	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGCCATACCTAAACATAA	NA	False	NA	NA	False	NA	NA	NA	29565250	29745096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_29566868_29734949_29737242_29744877
99140	chr1	-	2267	1	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	43	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCACTGCACCCGCTTCC	9070	False	NA	NA	False	NA	NA	NA	86458409	86456142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86456100_86458400
99141	chrX	+	6025	3	Intergenic	novelGene_3887	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	41	160	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTAGCAAGATTTTATC	NA	False	NA	NA	False	NA	NA	NA	18371668	18669347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_18374452_18503200_18503212_18666116
99142	chr3	+	1557	1	FSM	ENSMUSG00000104616.2	ENSMUST00000196501.2	463	1	-872	-222	-872	222	mono-exon	FALSE	NA	NA	NA	NA	NA	29	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTTTACAGAGTCAAGTA	NA	False	NA	NA	False	NA	NA	NA	41439295	41440852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41439300_41440900
99143	chr6	+	2590	17	NNC	ENSMUSG00000034269.13	novel	3334	18	NA	NA	-73	3013	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	28.3073946831919	2	20	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAAAACGCCAGAAGCAGG	7966	False	NA	NA	False	NA	NA	NA	113054448	113097905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113054674_113081895_113082083_113082625_113082723_113082877_113083103_113086845_113086952_113087334_113087487_113087590_113087632_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095218_113095306_113096376_113096635_113097801
99144	chr2	+	4065	12	NIC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	-3	-5	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	49.2282590348603	1	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	152068792	152123767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
99145	chr12	-	2901	17	NNC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-2	-7	intron_retention	FALSE	canonical	0	0	junction_6	76.9086054596623	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	84664116	84649433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_84649934_84650067_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84653083_84655362_84655434_84655579_84655643_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
99146	chr17	-	2462	11	NNC	ENSMUSG00000052397.9	novel	3164	13	NA	NA	30	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	276.215224055446	1	53	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTCTGATTGCATGGG	NA	False	NA	NA	False	NA	NA	NA	7050153	7005673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_7006867_7007028_7007111_7009766_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
99147	chr3	+	1095	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	401	-8	379	8	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAATGTTCAACATG	5841	False	NA	NA	False	NA	NA	NA	54389259	54390354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54389300_54390400
99148	chr7	+	624	7	Antisense	novelGene_ENSMUSG00000065219.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	31	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGGTCTTGTCGCAGGG	NA	False	NA	NA	False	NA	NA	NA	44775345	44778160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44775459_44775539_44775662_44775901_44775964_44776134_44776221_44776418_44776517_44776632_44776746_44778130
99149	chr17	-	2490	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	12	18	-4	-18	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	128	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884185	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99150	chr19	+	5074	3	Intergenic	novelGene_1225	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1714	2	158	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTGAGTAAAGGGGT	1267	False	NA	NA	False	NA	NA	NA	22699925	22705271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22699997_22700054_22700550_22700763
99151	chr15	+	4802	32	NNC	ENSMUSG00000022488.10	novel	4992	30	NA	NA	-42466	-1	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	4.21359970530981	41	63	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGGATGTTTGC	NA	False	NA	NA	False	NA	NA	NA	103319754	103407235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103319946_103337911_103337955_103363397_103363509_103364266_103364360_103368611_103368669_103369965_103370109_103370928_103371020_103371106_103371245_103372792_103372842_103372932_103373090_103379655_103379713_103379953_103380051_103381194_103381305_103381465_103381599_103381943_103382026_103382226_103382286_103382479_103382626_103384028_103384162_103384404_103384525_103386704_103386851_103387150_103387283_103390386_103390606_103391941_103392073_103394758_103394857_103394972_103395067_103395219_103395303_103395535_103395617_103398418_103398513_103399337_103399455_103399892_103400003_103401647_103401738_103405838
99152	chr17	-	659	3	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	726	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5465	98	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCTGCTCTCCTTGTAA	NA	False	NA	-123	True	NA	NA	NA	45879936	45878701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878911_45879191_45879489_45879783
99153	chr7	-	3024	5	Intergenic	novelGene_2902	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	97	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCCTAAAGGATCAAGTG	NA	False	NA	NA	False	NA	NA	NA	26711436	26582263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_26582354_26582996_26583576_26583797_26583947_26584044_26584568_26709753
99154	chr15	+	9238	37	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	248	7	248	-7	3prime_fragment	TRUE	canonical	3	15	junction_27	26.2503968223974	93	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAAACTTGTGGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	6738111	6829875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941_6786069_6788968_6789139_6793760_6793829_6794532_6794601_6797534_6797618_6798726_6798815_6799225_6799317_6799408_6799476_6799603_6799685_6801612_6801714_6803289_6803456_6804087_6804190_6804312_6804360_6805530_6805667_6806234_6806435_6806796_6806924_6807410_6807576_6807721_6807799_6808668_6808748_6811137_6811248_6811644_6811733_6812562_6812656_6813038_6813146_6813412_6813643_6815856_6816863_6818911_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
99155	chr17	+	3214	18	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	51	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	809.686324842329	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGTGGCGCACGTCTT	550	False	NA	NA	False	NA	NA	NA	56610450	56630483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617828_56619048_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629874_56630084
99156	chr15	+	10066	6	Antisense	novelGene_ENSMUSG00000084458.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	159	55	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAGGCAAAGGCGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	50518151	50753298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_50525133_50528082_50528206_50685500_50686104_50694223_50695360_50709414_50710341_50753001
99157	chr9	-	1294	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	30	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCGGAGTACACCGATATGA	NA	False	NA	NA	False	NA	NA	NA	64085801	64082141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082269_64082467_64082581_64082863_64083007_64083375_64083496_64084220_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
99158	chr12	+	4455	2	Intergenic	novelGene_4392	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	81	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605063	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68609044_68609797
99159	chr4	-	2774	7	Intergenic	novelGene_2016	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	15	52	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGATGAAATGGCAGAACT	9950	False	NA	NA	False	NA	NA	NA	145262872	145159006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_145159149_145176033_145176404_145176487_145177476_145180014_145180712_145216510_145216660_145262398_145262553_145262598
99160	chr4	+	4581	15	ISM	ENSMUSG00000001985.10	ENSMUST00000030676.8	8973	16	132802	4125	132802	-4125	3prime_fragment	FALSE	canonical	2	6	junction_12	6.0326492640346	17	12	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	125517294	125603841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_125517451_125526060_125526319_125533073_125533256_125535336_125535391_125543471_125543646_125544240_125544385_125550080_125550189_125553481_125553596_125564345_125564550_125579786_125580011_125584887_125585007_125587754_125587973_125598125_125598349_125598747_125598999_125601689
99161	chr4	+	2823	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	42.3411798395378	2	27	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206906	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146291416_146291510_146293441_146293573_146368115_146368200_146388486_146388614_146390758_146390897_146391562_146393416_146552596
99162	chr9	+	796	6	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1500	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7855.73330504543	2	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082174	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082182_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
99163	chr7	+	238	2	NNC	ENSMUSG00000064264.15	novel	1045	3	NA	NA	-35	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGCCAGATTCTACATGT	NA	False	NA	NA	False	NA	NA	NA	24206395	24215075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_24206585_24215026
99164	chr4	+	3308	2	Intergenic	novelGene_1880	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	11	junction_1	0	1	53	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820662	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66820891_66822755
99165	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
99167	chr13	+	1903	2	Intergenic	novelGene_1470	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	30	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATCTTCATACATTTTAGG	NA	False	NA	NA	False	NA	NA	NA	73798682	73800791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_73800490_73800695
99168	chr17	-	2420	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-24	intron_retention	TRUE	non_canonical	0	0	junction_5	3150.19722588657	4	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGAAGATGCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	45884199	45878724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880495_45880572_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99169	chr15	+	638	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	438	-74	-438	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTGGAAAGCTGTGGTG	88	False	NA	NA	False	NA	NA	NA	12574900	12575538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12575500
99170	chr18	-	2074	10	NNC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	16	-15	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	16.5492157883652	1	3	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTCTTACTTAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	67378332	67358128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360947_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
99171	chr17	+	6648	3	NIC	ENSMUSG00000039218.18	novel	8564	14	NA	NA	-3371	-423	intron_retention	FALSE	canonical	3	19	junction_1	70.5	3	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGGGCCTATAGCAGGTGC	NA	False	NA	NA	False	NA	NA	NA	24034910	24042878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_24040665_24040894_24041675_24042764
99172	chrM	-	1040	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTGTTTCTGTAGTTGAA	1004	False	NA	NA	False	NA	NA	NA	15184	14144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14100_15200
99173	chr5	-	2211	2	NIC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	464	3	intron_retention	FALSE	canonical	3	746	junction_1	0	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGTTTGTGAGCCTCCC	8174	False	NA	NA	False	NA	NA	NA	138179266	138176886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_138177873_138178041
99174	chr5	+	3116	2	Antisense	novelGene_ENSMUSG00000045078.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCGGTCGTGAGAACGCG	NA	False	NA	NA	False	NA	NA	NA	142991485	142995197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142991947_142992542
99175	chr4	+	4060	8	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	578	4	NA	NA	-216466	63387	multi-exon	FALSE	non_canonical	0	0	junction_1	168.449592775175	923	20	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146370017	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146370163_146599421_146599500_146697966_146698060_146797298_146797381_146800390_146800518_146802050_146802531_146802865_146803909_146803992
99176	chr7	-	3428	16	ISM	ENSMUSG00000032777.10	ENSMUST00000055506.9	6961	37	45141	0	6353	0	3prime_fragment	FALSE	canonical	3	219	junction_12	23.0085974269523	1	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTGTATTGGCCTAATG	NA	False	NA	NA	False	NA	NA	NA	125261811	125240125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_125240906_125241618_125241812_125242497_125242538_125243045_125243545_125244686_125244977_125245645_125245906_125246511_125246800_125247568_125247742_125250234_125250329_125251034_125251098_125253638_125253752_125255015_125255098_125256657_125256801_125258228_125258387_125261430_125261620_125261748
99177	chr8	+	3641	25	NNC	ENSMUSG00000031805.18	novel	4019	25	NA	NA	-2	-252	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_23	63.9239864344103	41	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTCTGCGCGGTTGTCA	NA	False	NA	NA	False	NA	NA	NA	72129193	72140948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140071_72140210_72140683
99178	chr7	-	4652	23	NNC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	-5271	-1	intron_retention	FALSE	canonical	0	0	junction_3	57.1653575093654	7	99	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAACCTTCCCTGTCTAT	NA	False	NA	NA	False	NA	NA	NA	29967343	29939568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29940140_29940655_29941249_29941438_29941700_29941822_29941938_29942170_29942567_29942855_29942960_29943257_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964747_29967090
99179	chr7	-	2552	4	NNC	ENSMUSG00000030760.15	novel	11340	11	NA	NA	15616	24022	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTCCTGTCTTCCAATG	NA	False	NA	NA	False	NA	NA	NA	97860479	97831573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_97831684_97832789_97833029_97857001_97857086_97858360
99180	chr5	-	3488	24	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	8	-1617	combination_of_known_splicesites	FALSE	canonical	2	11	junction_12	191.926892193538	1	75	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTCTTCTTCCCAT	8116	False	NA	NA	False	NA	NA	NA	100564085	100511686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
99181	chr13	-	2853	2	Intergenic	novelGene_1505	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	33	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACCCGGTCATTAATAAC	NA	False	NA	NA	False	NA	NA	NA	96830412	96826718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_96829008_96829848
99182	chr12	-	3104	6	Intergenic	novelGene_4316	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	55.134018536653	11	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTATAGTCTCCATTATTT	NA	False	NA	NA	False	NA	NA	NA	21817695	21807782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_21808228_21808311_21808453_21808491_21810703_21810872_21810934_21811135_21811263_21817576
99183	chr12	+	3636	1	Intergenic	novelGene_4406	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATCTTGCCATATCACG	NA	False	NA	NA	False	NA	NA	NA	76269289	76272925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_76269300_76272900
99184	chr6	+	2987	1	Intergenic	novelGene_4119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCAGGAATTCAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	10226335	10229322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_10226300_10229300
99185	chr10	+	2898	13	ISM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	1923	71	1312	2	3prime_fragment	FALSE	canonical	3	966	junction_7	247.782652854383	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTCCCTGAGCCCTTCA	995	False	NA	NA	False	NA	NA	NA	79692183	79700195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
99186	chr7	+	2916	8	NIC	ENSMUSG00000030802.15	novel	3405	12	NA	NA	5	0	intron_retention	FALSE	canonical	3	550	junction_6	40.5865163092677	5	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGCCCTCTTGGGCCCC	NA	False	NA	NA	False	NA	NA	NA	127503258	127507772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127505165_127505243_127506520_127506613_127506704_127507092
99187	chr10	+	2645	6	FSM	ENSMUSG00000075297.11	ENSMUST00000131558.2	1080	6	75	-1640	75	1640	multi-exon	FALSE	canonical	0	0	junction_1	0.8	7	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATTTCTCATTTTCAAA	NA	False	NA	NA	False	NA	NA	NA	22149319	22166388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_22149429_22159346_22159463_22161589_22161776_22162038_22162303_22162952_22163148_22164613
99188	chr15	-	3111	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	24	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAGCTCAGGACAGGTAA	9795	False	NA	NA	False	NA	NA	NA	22705095	22700903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22701313_22702305_22704582_22704669
99189	chr16	-	552	1	Intergenic	novelGene_3685	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212027	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99190	chr1	+	2996	10	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-11	-249	intron_retention	FALSE	canonical	0	0	junction_4	219.644381491965	1	76	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGCTGTGTTTTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	167177793	167195852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167184296_167184957_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
99191	chr9	-	4719	17	NIC	ENSMUSG00000032498.10	novel	2394	17	NA	NA	-12	5	intron_retention	FALSE	canonical	1	3	junction_11	135.577871996134	26	95	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTTTTTTATATAACC	NA	False	NA	NA	False	NA	NA	NA	111100626	111057317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111085950_111086082_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097372_111100476
99192	chr11	-	1144	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	1	12	0	-12	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	1	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAATGAATCAATAAGGA	NA	False	NA	NA	False	NA	NA	NA	33113076	33104938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
99193	chr2	+	1822	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	223	779	223	369	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	26	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATGCTTTTCTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	29952087	29961810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
99196	chr4	-	1267	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-74	-191	-74	191	mono-exon	FALSE	NA	NA	NA	NA	NA	3	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740980	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
99198	chr9	-	779	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-14	3	-14	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	8517	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAAAGAGACAGGGAAT	NA	False	NA	NA	False	NA	NA	NA	50256282	50255503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
99199	chr5	-	3725	11	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGCTACGCCCGCCCCAG	NA	False	NA	NA	False	NA	NA	NA	33829865	33815925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816069_33818562_33818728_33818861_33818990_33821164_33821245_33821608_33822198_33824034_33824510_33825304_33825396_33825475_33825579_33826004_33826990_33828745_33828855_33829008
99200	chr10	+	2939	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	25	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1969.39417290801	8	18	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2206	False	NA	NA	False	NA	NA	NA	81012489	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013621_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
99203	chr6	+	884	1	FSM	ENSMUSG00000101878.2	ENSMUST00000173192.2	387	1	-106	-391	-106	391	mono-exon	FALSE	NA	NA	NA	NA	NA	51	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAAAACACCAAATGCA	NA	False	NA	NA	False	NA	NA	NA	116150591	116151475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_116150600_116151500
99204	chr12	+	2938	1	Antisense	novelGene_ENSMUSG00000001270.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1715	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTCGCTGCTCCCTGA	7744	False	NA	NA	False	NA	NA	NA	111635796	111638734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_111635800_111638700
99205	chr12	+	5559	1	Intergenic	novelGene_4364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	165	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATTTCTTTAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	62591104	62596663	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_62591100_62596700
99206	chr4	-	2711	9	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	103.675877136391	117	81	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913178_146913263_146913577_146913991_146914158_146976285_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146991977_146992072_146993875
99207	chr12	-	2682	2	NIC	ENSMUSG00000001270.10	novel	719	3	NA	NA	-17	-2	intron_retention	FALSE	canonical	3	7921	junction_1	0	18	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111638408_111638663
99208	chr15	-	1170	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	185	388	58	-388	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATGCTGAGCAACACCAC	216	False	NA	NA	False	NA	NA	NA	98832261	98829693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
99209	chr13	+	4310	9	FSM	ENSMUSG00000007617.19	ENSMUST00000060490.11	2765	9	-374	-1171	-14	-168	multi-exon	FALSE	canonical	3	36	junction_8	6.10199762372946	35	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTTCTCTGGAGAATG	NA	False	NA	NA	False	NA	NA	NA	93441292	93541469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93524031_93524189_93528198_93528310_93529535_93529617_93538548
99211	chr5	+	3516	16	NIC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	6	-97	intron_retention	FALSE	canonical	0	0	junction_5	764.698412592979	5	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTTAGAGTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	108213545	108256038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
99212	chr4	+	2978	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	84.3474955170573	1563	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033868	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146036265_146036397_146054375_146054480_146058453_146058581_146060726
99213	chr9	+	690	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	-44	-1	-39	1	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTGTGATGTTGTC	333	False	NA	NA	False	NA	NA	NA	57428517	57439710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
99215	chrM	+	1530	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-290	138	-290	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	2	64	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACGCGGCAAACTAACC	-1	True	NA	NA	False	NA	NA	NA	9876	11406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11400
99217	chr17	+	3008	14	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	676	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	599.234531438767	5	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGGTGGCGCACGTCTTT	2182	False	NA	NA	False	NA	NA	NA	56612082	56630484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625331_56629037_56629126_56629355
99218	chr10	-	1892	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	14	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	615.967192488547	1	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899650	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897196_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
99219	chr4	+	5881	2	Intergenic	novelGene_2110	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	41	junction_1	0	9	71	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146797130	146806008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146797381_146800377
99220	chrX	-	5298	39	Antisense	novelGene_ENSMUSG00000093219.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	87	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAAATGACGCACAACCTC	NA	False	NA	NA	False	NA	NA	NA	150673059	150586362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_150586565_150589266_150589402_150589713_150589855_150618217_150618287_150623046_150623149_150623770_150623978_150625996_150626150_150633708_150633774_150635468_150635549_150636393_150636441_150636517_150636587_150637135_150637236_150639079_150639177_150639461_150639619_150639711_150639839_150640453_150640595_150640801_150640909_150643161_150643264_150643663_150643742_150645289_150645401_150645647_150645825_150646867_150646959_150647555_150647769_150653452_150653512_150654471_150654652_150657527_150657772_150659287_150659427_150659808_150659882_150661722_150661902_150663491_150663711_150664071_150664197_150665487_150665723_150666072_150666304_150668575_150668700_150669077_150669170_150669733_150670008_150671377_150671542_150672677_150672793_150672985
99221	chrX	+	3478	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	23	-2151	23	2151	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32943146	32946624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_32943100_32946600
99222	chr17	+	691	1	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1443	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCATGATCCGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	45878705	45879396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45878700_45879400
99223	chr17	+	2988	5	NNC	ENSMUSG00000060149.8	novel	1598	4	NA	NA	110	67398	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.9797113014799	1	76	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGTATGCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	17171923	17261817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17171971_17225344_17225539_17257537_17257665_17257906_17257968_17259258
99224	chr4	-	1199	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-6	-191	-6	191	mono-exon	FALSE	NA	NA	NA	NA	NA	5	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740912	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91740900
99225	chr2	+	2454	20	NNC	ENSMUSG00000017999.17	novel	2714	21	NA	NA	2431	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	187.074281245716	487	141	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACAGCAGACCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	166859660	166876845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303_166866478_166868039_166868191_166869588_166869689_166869788_166869931_166870197_166870352_166871199_166871282_166871404_166871583_166873254_166873362_166873470_166873574_166875482_166875578_166875659_166875775_166875955_166876044_166876392_166876465_166876558
99226	chr2	-	2584	7	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	94	multi-exon	FALSE	canonical	0	0	junction_1	62.8640508469577	10	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	156681710	156631637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
99227	chr15	-	3550	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	3	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATGGTGGTGAACAGAAA	9795	False	NA	NA	False	NA	NA	NA	22705095	22701499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704633
99228	chr7	+	2411	8	NNC	ENSMUSG00000070699.6	novel	1868	16	NA	NA	-2350	1946	intron_retention	TRUE	non_canonical	0	0	junction_1	101.344431902059	2	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGACCTTCTGAGAGGAGC	1600	False	NA	NA	False	NA	NA	NA	28439066	28448400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28439664_28440910_28440982_28441231_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28447363_28448379
99229	chr13	+	3215	1	Intergenic	novelGene_1448	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTATATAATCGTGTAA	809	False	NA	NA	False	NA	NA	NA	66730638	66733853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66730600_66733900
99230	chr7	-	1400	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-13	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8806.60862559334	8	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGAGTCTGTTGTTCATGT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394959_126395121_126395297_126395388_126395473_126395775_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
99231	chr2	+	2575	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-30	966	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	834.411708575739	2	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCTGCCGCCCCGACTC	NA	False	NA	NA	False	NA	NA	NA	162896576	162925585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_162896686_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
99232	chr4	+	3636	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	10	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	173.875512587457	162	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTAACAAGGTTGACT	NA	False	NA	NA	False	NA	NA	NA	146093403	146135312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146102109_146102186_146126781_146126867_146129876_146130004_146131535_146132137_146132553_146133393_146133642
99233	chr4	+	4621	1	Intergenic	novelGene_1889	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	113	86	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGACCCGTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	66821213	66825834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66821200_66825800
99234	chr9	-	1293	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	54	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6593.63400055943	4	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7154	False	NA	NA	False	NA	NA	NA	78388952	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386781_78387393_78387431_78387522_78387703_78387788_78387971_78388920
99236	chr16	-	546	1	Intergenic	novelGene_3683	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	21	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212021	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99237	chrM	+	2259	2	Genic_Genomic	ENSMUSG00000064367.1	novel	1824	1	NA	NA	0	574	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	97	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCTAATGACAAACATACGA	-4	True	NA	4	True	NA	NA	NA	11741	14139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13959_14097
99238	chr15	-	5144	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	117	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	9832	False	NA	NA	False	NA	NA	NA	22705058	22699821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
99239	chr11	+	2625	9	NNC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	25	792	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	168.497728100411	1	80	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTATTGATCCTGTTT	8519	False	NA	NA	False	NA	NA	NA	74661680	74709512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664347_74664476_74674883_74675088_74678389_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74707695_74707870_74707984
99240	chr7	-	3278	18	NIC	ENSMUSG00000035401.10	novel	3564	20	NA	NA	-2	321	combination_of_known_junctions	FALSE	canonical	3	11	junction_15	25.3643348221249	11	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCAGAGCCAGATGGCAC	3719	False	NA	NA	False	NA	NA	NA	98305773	98244010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98297011_98297112_98303950_98304060_98305680
99241	chr5	-	1698	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-47	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	6	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTGACTTGAGACCAATAA	8918	False	NA	NA	False	NA	NA	NA	142892480	142888916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890485_142891084_142891232_142891318_142891448_142892406
99242	chr16	-	564	1	Intergenic	novelGene_3797	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99243	chr19	+	5020	4	Intergenic	novelGene_1224	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1615.97469727166	1	106	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCCCCGAGTAGCTGAGT	1267	False	NA	NA	False	NA	NA	NA	22699925	22705263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22699997_22700054_22700550_22700763_22704723_22704768
99244	chr9	-	5122	29	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.556730616718567	1	134	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAAGAGGAGGAGGAGG	6410	False	NA	NA	False	NA	NA	NA	72656905	72569773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569907_72577247_72577414_72578521_72578584_72584594_72584674_72584772_72584813_72593341_72593395_72616391_72616444_72617758_72617820_72619446_72619547_72625497_72625667_72628582_72628696_72628774_72628944_72632298_72632365_72633695_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648968_72649932_72650041_72650819_72650917_72653686_72653759_72654404
99245	chr11	+	3437	7	NNC	ENSMUSG00000036819.15	novel	4359	6	NA	NA	-10	1317	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	21.461205309426	14	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAACTTGCTTCTTGGT	9547	False	NA	NA	False	NA	NA	NA	59340936	59350710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_59341334_59341491_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132_59347021_59349197
99246	chr11	+	1613	7	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-66	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1253.55765944593	1	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5340	False	NA	NA	False	NA	NA	NA	52251895	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251904_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
99247	chr4	+	3979	20	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	22	2138	intron_retention	FALSE	non_canonical	0	0	junction_16	391.614861114825	1136	56	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGAACCGTACAGGCGGC	10003	False	NA	NA	False	NA	NA	NA	155954045	155975698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972784_155972852_155972983_155973076_155973625_155973886_155974051_155974120_155975123_155975200_155975362_155975509
99248	chr4	-	2628	3	NNC	ENSMUSG00000093594.2	novel	2516	4	NA	NA	28	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.5	11	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATGTCCAATGTAGACTG	9499	False	NA	NA	False	NA	NA	NA	147894269	147866784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147868960_147891503_147891641_147893953
99249	chr4	+	2596	4	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	27	-243	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.962960031426	4	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAAAAAATATCCTTAAAA	5046	False	NA	NA	False	NA	NA	NA	145241480	145265515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145241491_145257381_145257486_145261385_145261513_145263160
99251	chr3	-	2151	1	Intergenic	novelGene_3075	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGCCCTAAGTGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	8086988	8084837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_8084800_8087000
99252	chr4	+	4167	2	NIC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	22436	1775	intron_retention	FALSE	canonical	3	89	junction_1	0	20	69	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCAAATACAATGACTCTG	NA	False	NA	NA	False	NA	NA	NA	147257386	147263004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_147261331_147262781
99253	chr4	-	2816	9	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-31923	63754	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	105.900233120612	33	69	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025970	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913118_146913622_146913864_146914367_146914452_146976159_146976629_146976961_146977116_146978205_146978333_146982168_146982279_147021745_147022566_147025878
99254	chr17	-	2466	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	6	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	3270.0116223035	14	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884191	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879828_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99255	chr11	+	1681	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-73	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1053.90480278502	18	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279434_52279568
99256	chr4	-	2751	6	NNC	ENSMUSG00000062518.8	novel	2885	4	NA	NA	4059	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	101.771115745088	136	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147782951	147757958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147758783_147758867_147759268_147759352_147760511_147762673_147762801_147766723_147766828_147782813
99257	chr3	+	2050	15	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	14	-12	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_8	482.250448312865	2949	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGTTAAAATAACCAGTACA	NA	False	NA	NA	False	NA	NA	NA	90383477	90395674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391598_90391658_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
99258	chr19	+	2403	1	Intergenic	novelGene_1248	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGTTACATCAAGGTGT	8987	False	NA	NA	False	NA	NA	NA	31094534	31096937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_31094500_31096900
99260	chr17	-	2157	4	ISM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	4533	383	4480	-383	3prime_fragment	FALSE	canonical	3	1697	junction_3	76.1051903617618	5	94	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAGCCCAGACACTAAC	9306	False	NA	NA	False	NA	NA	NA	25175130	25161826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991
99262	chr13	+	7589	3	Intergenic	novelGene_1303	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	25	111	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGGAGAGATAATGGGTGA	NA	False	NA	NA	False	NA	NA	NA	5136847	5226076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_5137626_5143451_5146271_5222084
99264	chr4	-	2351	9	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	-31923	63754	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	50.5999938241103	3	32	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147025970	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913157_146913745_146913948_146914367_146914401_146976276_146976580_146978205_146978333_146982168_146982285_147021745_147022236_147022273_147022497_147025871
99265	chr14	-	2485	13	Antisense	novelGene_ENSMUSG00000021913.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCGGCATCCCCATGGA	NA	False	NA	NA	False	NA	NA	NA	32070104	32059747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_32059838_32061160_32061341_32061856_32062011_32062599_32062702_32063155_32063286_32063994_32064145_32065156_32065284_32066276_32066459_32066669_32066743_32066839_32066966_32067066_32067139_32068353_32068814_32069465
99266	chr3	+	3826	3	Antisense	novelGene_ENSMUSG00000037922.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	64	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAGCTGCAGTCCACAT	281	False	NA	NA	False	NA	NA	NA	135824335	135886644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_135824458_135824513_135826438_135884864
99267	chr5	+	2639	1	ISM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	78704	179	23638	-179	mono-exon	FALSE	NA	NA	NA	NA	NA	1	139	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAACTAAAATAACTGTA	NA	False	NA	NA	False	NA	NA	NA	93319999	93322638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_93320000_93322600
99268	chr4	-	613	1	Antisense	novelGene_ENSMUSG00000066315.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTCCACTCGCTGCTGC	NA	False	NA	NA	False	NA	NA	NA	10849105	10848492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_10848500_10849100
99269	chr9	+	1330	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1448	150	1430	-150	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	10	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTTGTGTGACTCTTA	NA	False	NA	NA	False	NA	NA	NA	64082104	64085798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
99270	chrX	-	2787	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	51	10	-6	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	225193	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921358	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
99271	chrM	+	969	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	-64	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATCTTAATTCTTATACC	-2	True	NA	87	True	NA	NA	NA	14144	15224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14428_14538
99272	chr13	-	2346	4	NNC	ENSMUSG00000074865.12	novel	2206	3	NA	NA	2	0	intron_retention	FALSE	canonical	0	0	junction_2	13.9602610609146	5	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706424	62664608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62666545_62668231_62668359_62686180_62686340_62706300
99273	chr4	+	3050	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	40.1690870640043	3	53	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206906	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146291416_146291510_146293441_146293573_146368115_146368239_146384279_146384431_146388486_146388614_146390758_146390897_146391562_146392495_146392628_146393458_146552638
99274	chr18	-	1024	2	Antisense	novelGene_ENSMUSG00000103125.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	49	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGAAGGGGCTTGTTCCC	NA	False	NA	NA	False	NA	NA	NA	37677991	37676850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_37676991_37677107
99275	chr4	+	2855	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43739	110	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	163.466693855354	2	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTTCGAGTATTCAGT	NA	False	NA	NA	False	NA	NA	NA	145508067	145556622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145508210_145510590_145510684_145541336_145541406_145551778_145551837_145552678_145552806_145554256
99276	chr4	-	2436	10	NNC	ENSMUSG00000028619.16	novel	6431	5	NA	NA	-21868	340	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.4827743720696	4542	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCAATCTTTTAAACTTTC	8670	False	NA	NA	False	NA	NA	NA	107058181	107022514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_107022887_107034761_107034902_107035434_107036113_107042972_107043078_107044812_107044911_107047731_107047883_107049656_107049741_107050495_107050578_107054702_107054810_107057562
99277	chr11	+	1780	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-78	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1095.82123884327	3	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5328	False	NA	NA	False	NA	NA	NA	52251883	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265155_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
99278	chr1	-	4462	4	ISM	ENSMUSG00000026701.16	ENSMUST00000156678.8	913	5	37	-6	-11	6	intron_retention	FALSE	canonical	3	1689	junction_3	61.3532576333337	5	120	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCACCAAAACCTTCTCGGG	NA	False	NA	NA	False	NA	NA	NA	161078702	161069127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826
99279	chr4	-	3048	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-24	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	105.712759400178	3	108	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	9499	False	NA	NA	False	NA	NA	NA	147894269	147838433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842247_147889666_147889780_147891546_147891641_147893775
99280	chr13	+	4013	7	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	3	4510	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	16.327379867368	39	104	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAACATCACAGATGTTTT	NA	False	NA	NA	False	NA	NA	NA	61803119	61896094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61803248_61803432_61803494_61804858_61805998_61891703_61892787_61892954_61893373_61893456_61893967_61895420
99281	chr5	+	3537	10	NNC	ENSMUSG00000107385.4	novel	1714	7	NA	NA	18	13662	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	5.96284793999944	47	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTATGAACATAGTGGAGCAT	8050	False	NA	NA	False	NA	NA	NA	67621263	67648637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_67621362_67623669_67623772_67624135_67624364_67625218_67625348_67625991_67626159_67630396_67631405_67634249_67634626_67635222_67635369_67646778_67646895_67647470
99282	chr13	-	2610	14	NNC	ENSMUSG00000021546.19	novel	2653	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2619.59134985529	6	47	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	4760	False	NA	NA	False	NA	NA	NA	58550321	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
99283	chr9	-	6844	18	NNC	ENSMUSG00000079469.11	novel	3221	13	NA	NA	-6	21841	intron_retention	FALSE	non_canonical	0	0	junction_1	28.1881960129354	317	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCGCAGGCGTCCGCAGCG	NA	False	NA	NA	False	NA	NA	NA	72946987	72892859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_72892955_72904682_72904751_72906303_72906424_72906741_72906817_72908952_72909157_72912921_72913174_72917577_72917693_72919209_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
99284	chrX	-	1736	3	NNC	ENSMUSG00000031422.17	novel	1720	3	NA	NA	905	5	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	1434	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGTGTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	135640327	135633696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135635251_135636294_135636372_135640222
99285	chrM	+	1616	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-3	-68	-3	68	mono-exon	FALSE	NA	NA	NA	NA	NA	9	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGATATTAGTAAAATCAA	-2	True	NA	NA	False	NA	NA	NA	5324	6940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
99286	chr10	+	3016	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	152	junction_13	1878.32510687064	25	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017402_81017722
99287	chr11	-	5556	27	Fusion	ENSMUSG00000018287.13_ENSMUSG00000040712.17	novel	4495	23	NA	NA	7	-19	multi-exon	FALSE	canonical	2	2	junction_22	321.21353659937	4005	55	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTCTGACTTGTACCTG	8396	False	NA	NA	False	NA	NA	NA	70578762	70554615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022_70561089_70561171_70561247_70561374_70561563_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719_70573874_70574715_70574852_70574930_70574999_70576888_70576993_70577172_70577268_70578711
99288	chr16	+	5611	9	ISM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	2	-609	2	-541	intron_retention	FALSE	canonical	3	375	junction_1	88.7558976913647	8	112	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCAAATTGGCTTTAGAA	NA	False	NA	NA	False	NA	NA	NA	84631814	84658812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267
99289	chr11	+	1975	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	328.375612995053	6	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	NA	False	NA	NA	NA	115455334	115474732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468792_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472569_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
99290	chr4	+	2113	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078498.6	novel	2800	4	NA	NA	-6	182333	multi-exon	FALSE	non_canonical	0	0	junction_2	183.583238765296	82	32	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147209706	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147316807_147316901_147390101_147390156_147413438_147413566_147415724_147415863_147416782_147418091_147600209
99291	SIRV1	-	1228	5	NNC	SIRV1A	novel	1363	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2319.9025168097	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10787	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1485_6337_6474_6560_6814_7552_7768_10647
99292	chr15	-	2917	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCGACCGTAGCTGCCCA	9799	False	NA	NA	False	NA	NA	NA	22705091	22702077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22702926_22703022
99293	chr6	+	5156	1	Antisense	novelGene_ENSMUSG00000029752.13_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	135	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGCTTGCCTCTTAGA	NA	False	NA	NA	False	NA	NA	NA	7686285	7691441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_7686300_7691400
99294	chr4	+	3173	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1901	multi-exon	FALSE	non_canonical	0	0	junction_2	79.511626605372	30	50	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206906	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146209452_146209550_146368119_146368213_146371788_146371880_146384307_146384431_146388486_146388614_146390758_146390904_146391317_146392124_146392292_146393458_146552638
99295	chr2	-	3300	25	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	-27	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	293.98453993743	3	51	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACCCATGTGACCTAGT	NA	False	NA	NA	False	NA	NA	NA	127673751	127643049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127658008_127658068_127659171_127659357_127661132_127661281_127663594_127663777_127663861_127663915_127665112_127665209_127665878_127665980_127667026_127667071_127669217_127669418_127671357_127671497_127671597_127671658_127673639
99296	chrUn_MU069435v1	+	320	1	Intergenic	novelGene_4721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCGCGTCGTCCCCGCGG	NA	False	NA	NA	False	NA	NA	NA	0	320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_300
99297	chrX	-	4094	2	Intergenic	novelGene_4052	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_1	0	19	71	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCTTTCAGTTATTTTCT	NA	False	NA	NA	False	NA	NA	NA	126455734	126448165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_126452025_126455499
99298	chr14	+	1794	13	NNC	ENSMUSG00000021957.8	novel	1619	13	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	601.050532863548	18	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAATCCTCAGACTCTTT	NA	False	NA	NA	False	NA	NA	NA	30271123	30295575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287602_30290257_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
99299	chrX	-	1930	4	Intergenic	novelGene_3901	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	11	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAATACCCACCACAAA	NA	False	NA	NA	False	NA	NA	NA	30469567	30436303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_30437728_30438022_30438134_30452384_30452554_30469341
99300	chr9	+	3008	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	46	-4	intron_retention	FALSE	non_canonical	0	0	junction_13	345.925761765529	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5558	False	NA	NA	False	NA	NA	NA	35122496	35128306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_35122702_35123287_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127462_35127620_35128044_35128091
99301	chr16	+	564	1	Intergenic	novelGene_3798	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
99302	chr16	+	3760	6	Intergenic	novelGene_3583	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	7.81280999384985	50	43	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAATACTTAGTCACAGA	NA	False	NA	NA	False	NA	NA	NA	8970660	9043698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_8970862_9010517_9010673_9032429_9032546_9038336_9038565_9040402_9040532_9040767
99303	chr7	-	912	4	NNC	ENSMUSG00000050708.17	novel	968	4	NA	NA	1	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	30199.1782338527	2	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTGGTGTTTTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	45109262	45107370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107708_45107958_45108085_45108507_45108648_45108953
99304	chr4	+	3500	7	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	12	41588	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	88.2867801856855	2	80	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCCATCCGCTACG	NA	False	NA	NA	False	NA	NA	NA	146206912	146256592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240316_146250678_146250737_146251579_146251703_146253156_146254043_146254631
99305	chr12	-	1978	1	Intergenic	novelGene_4360	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	35	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTGTAAGAAAAGCTGCAAG	NA	False	NA	NA	False	NA	NA	NA	55600681	55598703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_55598700_55600700
99306	chr3	+	3117	10	NIC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	28	-65	intron_retention	FALSE	canonical	3	1252	junction_8	61.1121212037734	11	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGTGTGACCATGTCCT	NA	False	NA	NA	False	NA	NA	NA	90383491	90395621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90394625_90394765
99307	chrM	-	826	1	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTAGTTGTATGTACC	-8	True	NA	28	True	NA	NA	NA	3681	2855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2900_3700
99308	chr8	-	2870	19	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	20	14249	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	71.9708445770633	3	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGGAGGGACAGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	47070197	47014379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47014659_47014810_47014872_47015450_47015680_47021643_47021718_47023006_47023113_47025784_47025865_47026466_47026514_47026881_47026945_47029259_47029416_47031287_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039679_47058176_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070046
99309	chr5	+	2900	3	Intergenic	novelGene_874	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	135	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAGACAGGGTTTCTCTGT	NA	False	NA	NA	False	NA	NA	NA	142887783	142954661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_142890540_142890991_142891113_142954638
99310	SIRV1	-	1283	4	FSM	SIRV1A	SIRV102	1300	4	17	0	17	0	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	11	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10349	1006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
99311	chr4	+	8294	7	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159919	182155	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.5530178837489	87	153	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146426564	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146797298_146800081_146800232_146802609_146802693_146803281_146803449_146804170_146804421
99313	chr3	-	1744	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	147	0	147	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	29105	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30701871	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
99314	chr2	-	2503	13	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	1366	-642	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	510.818535674743	5	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTATCTTGAAACACTGG	NA	False	NA	NA	False	NA	NA	NA	103608347	103596004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606386_103606449_103606503_103608307
99315	chr16	+	2270	12	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	786.975715546232	1	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927470_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22932006_22932441
99316	chr15	+	6351	3	Antisense	novelGene_ENSMUSG00000053929.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	69	70	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGAGGCTGTTTTTTT	1537	False	NA	NA	False	NA	NA	NA	76527987	76536492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_76530777_76532300_76532510_76533139
99317	chr11	+	4122	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-2	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	874.856051245003	1	87	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332178	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336115_72336443_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338561_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341454_72341601_72341702
99318	chr17	+	2182	8	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	862.312955169445	27	62	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	502	False	NA	NA	False	NA	NA	NA	56610402	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619416_56619791_56619968_56620064_56620151_56629651
99319	chr8	+	2392	3	NNC	ENSMUSG00000033009.16	novel	718	7	NA	NA	-6	4318	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	80	1	22	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAAGAGTTGCCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	94763859	94770398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_94764071_94765592_94765739_94768363
99320	chr2	+	3632	9	NNC	ENSMUSG00000033943.16	novel	825	2	NA	NA	-24407	5235	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	43.0834945193632	9	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGTGGTAAGCCTGTTT	8245	False	NA	NA	False	NA	NA	NA	119703301	119762407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_119703365_119733086_119734215_119746911_119747855_119750106_119750186_119750292_119750389_119752218_119752324_119753908_119754568_119756859_119757203_119762191
99321	chr9	-	1337	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	54	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4740.55454432866	1	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTGTTGGTCAATGC	7154	False	NA	NA	False	NA	NA	NA	78388952	78385737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78385745_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
99322	chr16	+	3521	3	Intergenic	novelGene_3625	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	25336674	25341906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_25337345_25337607_25340249_25341696
99323	chr14	-	4125	15	Antisense	novelGene_ENSMUSG00000021767.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	93	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCGGAAGTGAACTGACTG	NA	False	NA	NA	False	NA	NA	NA	21719606	21531516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21531622_21566693_21567567_21659822_21659930_21668957_21669074_21669283_21669366_21676784_21676907_21678878_21678995_21681387_21681530_21684541_21684704_21687612_21687709_21710810_21711041_21711493_21711654_21712220_21712533_21714522_21714817_21718398
99324	chr9	-	2048	14	NNC	ENSMUSG00000032198.10	novel	1868	15	NA	NA	16	-963	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	55.6811506036323	3	52	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGGCCTCGAACTCAGAAA	6291	False	NA	NA	False	NA	NA	NA	21763896	21749607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_21750210_21750438_21750533_21750648_21750777_21750960_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
99325	chr8	-	5440	5	Antisense	novelGene_ENSMUSG00000110458.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	156	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGCGGGAAACCCAGCC	NA	False	NA	NA	False	NA	NA	NA	20727549	20697838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20698084_20711885_20712260_20717194_20717493_20721117_20721239_20723147
99326	chr13	-	3676	3	Intergenic	novelGene_1437	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	113	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTCAGACCCGCGTCCAAT	NA	False	NA	NA	False	NA	NA	NA	66618336	66468599	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66469398_66563351_66566151_66618257
99327	chr9	-	3963	2	NNC	ENSMUSG00000032494.13	novel	786	3	NA	NA	1059	-198	intron_retention	FALSE	canonical	0	0	junction_1	0	2	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAACACCCGAGTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	110772880	110768868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_110771990_110772038
99328	chr7	-	1908	4	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	4	185	intron_retention	FALSE	canonical	3	19619	junction_3	341.627802667692	5	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGCCTTGACTTTCTCCTA	NA	False	NA	NA	False	NA	NA	NA	126398309	126394898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394985_126395121_126395928_126396025_126396949_126398216
99329	chrM	-	1270	2	Genic_Genomic	ENSMUSG00000064352.1	novel	69	1	NA	NA	-5	1393	multi-exon	FALSE	canonical	0	0	junction_1	0	2	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCTAAAAGTGCACCTGG	9245	False	NA	NA	False	NA	NA	NA	6943	5476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_-_5711_5907
99330	chr3	-	3360	24	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	-26	-113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	349.30562500443	4	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTAGTTGAAGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	89946189	89907712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909124_89909176_89909585_89909781_89910551_89910620_89915562_89915669_89916416_89916606_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946154
99331	chr1	+	4440	21	Antisense	novelGene_ENSMUSG00000102960.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	171	60	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCTCATTCAGCGCCTG	292	False	NA	NA	False	NA	NA	NA	156634329	156767131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_156636762_156639012_156639109_156641009_156641114_156645310_156645406_156647383_156647491_156648958_156649037_156651562_156651615_156655708_156655862_156656541_156656697_156657952_156658022_156660233_156660326_156660464_156660602_156697009_156697138_156712102_156712196_156714660_156714749_156715514_156715600_156720476_156720580_156728152_156728209_156729356_156729461_156735208_156735351_156767060
99332	chr17	-	3006	6	Fusion	ENSMUSG00000073402.12_ENSMUSG00000073403.12	novel	1698	6	NA	NA	162	15238	intron_retention	TRUE	non_canonical	0	0	junction_1	0	1	65	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGAGAACCTTCCAGAAA	NA	False	NA	NA	False	NA	NA	NA	36478574	36437411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_36437477_36446828_36447112_36453068_36453673_36453870_36453915_36454043_36455794_36478314
99333	chr1	-	2409	15	NNC	ENSMUSG00000094410.9	novel	10156	17	NA	NA	13877	-1571	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	170.961819941035	1	93	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACCCT	NA	False	NA	NA	False	NA	NA	NA	133575179	133549248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566273_133566352_133566610_133566688_133566777_133566982_133568349_133568463_133573464_133573585_133575073
99334	chr4	+	2777	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	15	-1901	multi-exon	TRUE	non_canonical	0	0	junction_2	37.9148676653717	2	67	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206915	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146207051_146207223_146207708_146207846_146291416_146291510_146365127_146365259_146368116_146368209_146384369_146384431_146388486_146388614_146390758_146390897_146391562_146392408_146392742_146393416_146552596
99335	chr19	-	3733	3	Antisense	novelGene_ENSMUSG00000093315.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	610	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGGCCTTGGACACTCT	NA	False	NA	NA	False	NA	NA	NA	44295297	44230249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44230261_44291444_44292157_44292287
99336	chr18	+	4715	4	FSM	ENSMUSG00000041607.18	ENSMUST00000091789.11	4797	4	75	7	59	-7	multi-exon	FALSE	canonical	3	13	junction_1	4.02768199119819	41	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGCACATGGACTTTTT	NA	False	NA	NA	False	NA	NA	NA	82493345	82576821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_82493520_82518851_82518928_82540174_82540263_82572444
99338	chr6	+	2009	11	NIC	ENSMUSG00000004270.14	novel	2281	13	NA	NA	-60	149	intron_retention	FALSE	canonical	2	20	junction_2	253.502189339658	1	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGCTAGCATCCCAGA	NA	False	NA	NA	False	NA	NA	NA	124640074	124681129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_124640323_124675032_124675141_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457
99339	chr11	-	2334	15	NNC	ENSMUSG00000018651.15	novel	2151	16	NA	NA	2506	260	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	194.40484792813	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCTTTCTGTGAGACTCA	NA	False	NA	NA	False	NA	NA	NA	84017920	83969485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997169_84000785_84000872_84009073_84009161_84011936_84012015_84017813
99340	chr4	+	2593	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	76.1162761832185	32	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147394998	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724_147416916_147417168
99341	chr4	-	4179	13	NNC	ENSMUSG00000028656.15	novel	2768	13	NA	NA	8	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	298.160878926499	5	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTCACCTGATGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	122779696	122752842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122753179_122753236_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122765291_122766124_122766250_122779606
99342	chr4	+	2554	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	2800	4	NA	NA	-81615	182330	multi-exon	FALSE	non_canonical	0	0	junction_1	69.3181073024935	2	28	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	2757	False	NA	NA	False	NA	NA	NA	147233125	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147233281_147316807_147316905_147393104_147393184_147413438_147413566_147415724_147415863_147416444_147418088_147600206
99344	chr17	+	1691	4	NIC	ENSMUSG00000024160.17	novel	1953	7	NA	NA	-70	0	intron_retention	FALSE	canonical	3	185	junction_1	16.5193489244852	40	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCCTGTGTCTATTGT	NA	False	NA	NA	False	NA	NA	NA	25106767	25111121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25106892_25109256_25109910_25109984_25110111_25110333
99345	chr1	+	4634	25	NIC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	6	-3	combination_of_known_junctions	FALSE	canonical	3	17	junction_3	65.5311630702014	1	93	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGACCCACTTTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	128031073	128165469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_128031221_128079480_128079690_128080925_128081137_128090505_128090596_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
99346	chr19	+	2896	4	NNC	ENSMUSG00000024975.14	novel	1623	10	NA	NA	25670	14789	intron_retention	FALSE	non_canonical	0	0	junction_1	0	864	35	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGGAGGAAAGGAAAAGGGC	NA	False	NA	NA	False	NA	NA	NA	53917516	53933080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_53919933_53920559_53920693_53931896_53932011_53932847
99347	chr13	-	2806	10	NNC	ENSMUSG00000021196.15	novel	8681	16	NA	NA	1018	1383	intron_retention	FALSE	non_canonical	0	0	junction_2	456.415205165399	1	58	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCTAACGTCTCCCGGC	3366	False	NA	NA	False	NA	NA	NA	6671070	6646947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6648863_6650631_6650703_6652766_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669508_6669601_6670921
99348	chr15	+	2741	8	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	15214	0	2963	0	3prime_fragment	FALSE	canonical	3	809	junction_1	45.8066032135017	5	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	101997421	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
99349	chr2	+	1746	3	Intergenic	novelGene_2571	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	2.5	10	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTACTCAGACTGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	17957598	17961746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_17957699_17957975_17958093_17960217
99350	chr17	+	2995	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	4	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	739.634324239857	2	63	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATTCTGGCCGGGCAGTG	503	False	NA	NA	False	NA	NA	NA	56610403	56630469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627485_56629515_56629943_56630110
99351	chr11	-	4516	14	NNC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-5	-5	intron_retention	FALSE	canonical	0	0	junction_2	320.174508629796	14	138	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTCTGACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	95201020	95165089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167365_95168290_95168442_95171216_95172468_95172664_95172755_95174854_95175047_95177151_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
99352	chr11	+	2477	17	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	-43	0	intron_retention	FALSE	non_canonical	0	0	junction_3	259.74551848877	5	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	NA	False	NA	NA	NA	115455307	115474732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459185_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
99353	chr7	+	4038	16	Antisense	novelGene_ENSMUSG00000037552.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	31	67	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTCGGAGCCCACAGTGC	NA	False	NA	NA	False	NA	NA	NA	28059029	28069842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_28060689_28061234_28062134_28062250_28062427_28063887_28063938_28064012_28064060_28064151_28064254_28064341_28064375_28064705_28064804_28064886_28064971_28067059_28067267_28067404_28067544_28067721_28067867_28068103_28068153_28068246_28068315_28069484_28069589_28069664
99354	chr11	+	6972	29	FSM	ENSMUSG00000020859.17	ENSMUST00000041956.14	7340	29	365	3	365	-1	multi-exon	FALSE	canonical	3	49	junction_7	9.62220009633335	69	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGTGAAGTCTAGTGT	348	False	NA	NA	False	NA	NA	NA	93887293	94016908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_93887400_93904448_93904570_93927425_93927497_93934397_93934493_93939233_93939385_93958718_93958927_93959761_93959862_93962390_93962513_93972165_93972224_93973585_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
99355	chr1	-	516	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	406	-31	406	31	mono-exon	FALSE	NA	NA	NA	NA	NA	49	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86836999	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837000
99356	chr7	-	2656	8	ISM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	-42	50	-13	-50	intron_retention	FALSE	canonical	3	19253	junction_4	557.41824695718	24	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGCCATCCCTTCCAG	NA	False	NA	NA	False	NA	NA	NA	126398355	126394457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815
99357	chr19	+	2563	13	NNC	ENSMUSG00000024949.18	novel	2863	13	NA	NA	49	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	390.07188618111	4	93	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGGTCCGTTTCTTTTCTTT	924	False	NA	NA	False	NA	NA	NA	6414041	6427229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424291_6424554_6424639_6424748_6424929_6426325
99359	chr17	-	1278	1	Intergenic	novelGene_234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGAGGCGCTGGCCGTGGT	NA	False	NA	NA	False	NA	NA	NA	40156213	40154935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_40154900_40156200
99360	chr11	-	2237	12	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-15	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1617.05597198394	1	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9250	False	NA	NA	False	NA	NA	NA	106679724	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676356_106677324_106677371_106677734_106677901_106679098_106679286_106679524
99361	chr16	-	564	1	Intergenic	novelGene_3799	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2590	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99363	chrM	+	1590	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	24	-69	24	69	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGATATTAGTAAAATCAAT	25	False	NA	NA	False	NA	NA	NA	5351	6941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_6900
99364	chr7	+	4728	9	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	-10	-45	intron_retention	FALSE	canonical	3	50	junction_1	19.3455421221531	22	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGTTTCCTAAGTGAATCT	NA	False	NA	NA	False	NA	NA	NA	101714707	101732924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101729812_101730689_101730818_101731247
99365	chr12	+	1430	5	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-1	820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1532.38105166437	1	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGTTAAATGCTTTGTA	9258	False	NA	NA	False	NA	NA	NA	100165786	100173574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100165976_100169895_100169978_100171871_100171979_100172356_100172493_100172658
99366	chr4	+	2592	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-13	1	multi-exon	TRUE	non_canonical	0	0	junction_3	18.5472369909914	128	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	5006	False	NA	NA	False	NA	NA	NA	145241440	145351912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145241589_145343640_145343746_145347127_145347255_145348694_145349328_145350333
99367	chr2	+	1556	2	Genic_Genomic	ENSMUSG00000081416.2	novel	386	1	NA	NA	-4053	79	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	74	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATATTTTTTCCATGGGGT	NA	False	NA	NA	False	NA	NA	NA	119495586	119500104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_119496606_119499567
99368	chr18	-	2533	1	Antisense	novelGene_ENSMUSG00000041607.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	89	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCAGTTATTCTTTGGG	10004	False	NA	NA	False	NA	NA	NA	82575073	82572540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_82572500_82575100
99369	chrM	-	1913	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	366	-1760	366	1760	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGTAGAAGAATGAAGAT	-8	True	NA	NA	False	NA	NA	NA	13704	11791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11800_13700
99370	chr1	+	6986	18	FSM	ENSMUSG00000036155.14	ENSMUST00000038361.11	8436	18	339	1111	329	-1111	multi-exon	FALSE	canonical	0	0	junction_2	2.16930457818656	44	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAAGTTTCACTCCGTGA	NA	False	NA	NA	False	NA	NA	NA	127133093	127414962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127133165_127177526_127177577_127234370_127234754_127248340_127248503_127292884_127292962_127294139_127294230_127310657_127310730_127312504_127312667_127315079_127315250_127318480_127318616_127325243_127325378_127339863_127339998_127373978_127374129_127387572_127387720_127396928_127397046_127399237_127399313_127407201_127407360_127410263
99371	chr4	-	1263	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-189	-72	189	mono-exon	FALSE	NA	NA	NA	NA	NA	11	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAGACA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
99372	chr1	-	1760	8	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	32	-1527	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	847.316339740853	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAAAAAAAACTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	13730738	13695080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13695141_13696315_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
99373	chr6	-	1180	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13741	16	4172	1	mono-exon	FALSE	NA	NA	NA	NA	NA	41	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122705963	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706000
99374	chr9	+	1088	8	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1891	147	-1869	-147	3prime_fragment	FALSE	canonical	3	16882	junction_1	1498.71829594899	42	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082547	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
99375	chr2	-	4349	3	NNC	ENSMUSG00000006471.19	novel	4517	12	NA	NA	853	-33	intron_retention	FALSE	non_canonical	0	0	junction_1	89.5	1	87	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGTTCTCAATAAACAG	NA	False	NA	NA	False	NA	NA	NA	25139501	25134865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_25138389_25138517_25138759_25138916
99376	chr11	+	1177	2	FSM	ENSMUSG00000019505.8	ENSMUST00000136938.2	890	2	73	-360	73	0	multi-exon	FALSE	canonical	3	711	junction_1	0	27	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	NA	False	NA	NA	NA	62442574	62444039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442678_62442965
99377	chr5	-	4852	12	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	3	107	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256654	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208740_108228785_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108241272_108241989_108242113_108246982_108247053_108248678_108248857_108252134_108252184_108252290_108252391_108254448
99378	chr17	-	586	1	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	1351	-25	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	7	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGAAGATGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	45879311	45878725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45878700_45879300
99379	chr13	+	2870	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	2	519	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	113.706859951368	30	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62277748	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62320940_62321140
99380	chr4	+	3099	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	2	-1910	multi-exon	FALSE	non_canonical	0	0	junction_2	79.511626605372	4	95	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCTTGGTTCACATTAT	NA	False	NA	NA	False	NA	NA	NA	146206902	146552839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146209452_146209550_146368119_146368213_146371788_146371878_146384373_146384431_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393460_146552640
99382	chr16	-	2731	19	NNC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	-17	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	480.358344248217	1	66	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAGCCTGAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	16176746	16131253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16131908_16132127_16132288_16134197_16134304_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141493_16141634_16141834_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
99383	chr4	+	2536	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	11	-13	multi-exon	FALSE	non_canonical	0	0	junction_1	35.6791255498225	10	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGATTCAACAAGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	147216505	147669642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578926_147637751_147637884_147639766_147639810_147665698_147665826_147667290_147667436_147667927_147668409_147668576
99384	chr16	+	5318	18	Antisense	novelGene_ENSMUSG00000033149.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	43	47	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCACTCCGGGCGCCCCTC	NA	False	NA	NA	False	NA	NA	NA	45566681	45664719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_45568295_45569089_45569184_45571716_45571928_45577460_45577608_45578478_45578571_45583272_45583476_45591032_45591134_45592496_45592639_45595306_45595386_45598077_45598165_45600617_45600732_45601665_45601820_45609350_45609486_45621859_45621993_45623058_45623205_45628490_45628872_45645120_45646461_45664573
99386	chr15	-	1476	1	Intergenic	novelGene_3324	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGCATCGGATCCCATTA	NA	False	NA	NA	False	NA	NA	NA	79810038	79808562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_79808600_79810000
99389	chr16	+	500	1	Intergenic	novelGene_3827	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211539	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
99390	chr12	-	2683	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	12	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5398.48243490705	17	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTGGAATGTGTCTTT	NA	False	NA	NA	False	NA	NA	NA	110662711	110657464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661105_110661485_110661829_110661948_110662115_110662685
99391	chr5	-	1561	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	238	-13	intron_retention	FALSE	non_canonical	0	0	junction_1	1654.6796668842	5	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACACAAACAGCTTGTG	3899	False	NA	NA	False	NA	NA	NA	142891338	142888882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889271_142889404_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
99392	chr7	-	3859	20	Intergenic	novelGene_2996	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	22	15	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGTAGGGGACTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	96492314	95860810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_95861198_96004562_96004617_96085964_96086063_96199213_96199504_96202681_96202954_96293204_96293415_96343975_96344231_96351846_96351946_96353130_96353367_96378553_96378732_96384887_96385105_96386555_96386768_96421209_96421311_96423179_96423375_96427023_96427225_96446524_96446712_96461038_96461185_96472934_96473152_96486480_96486601_96492130
99393	chr3	+	1016	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	44	-1	11	1	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	35	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGTCTTGCGTCAAC	3601	False	NA	NA	False	NA	NA	NA	88486958	88495727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
99394	chr11	-	1159	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	24	-181	24	181	mono-exon	FALSE	NA	NA	NA	NA	NA	102	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4485	False	NA	NA	False	NA	NA	NA	20285989	20284830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286000
99395	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
99397	chr4	+	2690	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-34556	-7	multi-exon	TRUE	non_canonical	0	0	junction_2	11.4944529656523	1	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTGCTTTGATTGT	NA	False	NA	NA	False	NA	NA	NA	145138753	145265751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145138851_145160315_145160385_145173283_145173342_145174456_145174578_145176036_145176424_145177259_145177273_145263722_145264705_145264788
99400	chr11	+	4217	27	NNC	ENSMUSG00000020721.17	novel	937	4	NA	NA	-1071	-2113	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_24	59.6501139535756	2	87	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGCAATCCCTAGCCGCC	9347	False	NA	NA	False	NA	NA	NA	107437684	107561000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_107437878_107440171_107440228_107465763_107465992_107468688_107468726_107483531_107483657_107485964_107486022_107489975_107490028_107491101_107491178_107493135_107493335_107493761_107493870_107494891_107495190_107504676_107504945_107509808_107510143_107510909_107511041_107517360_107517541_107522997_107523177_107525805_107525925_107526991_107527138_107528605_107528754_107536875_107537060_107539937_107540167_107546869_107547075_107551920_107551973_107552667_107552853_107554433_107554642_107556824_107556905_107560860
99401	chr18	-	10224	12	Antisense	novelGene_ENSMUSG00000024576.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	53	136	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCAGCTGCGCCTGCGCG	3221	False	NA	NA	False	NA	NA	NA	61723131	61688239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61688943_61689571_61689680_61701333_61701459_61702531_61702632_61704942_61705031_61708481_61708619_61709575_61709655_61710246_61710322_61711735_61711837_61713401_61717474_61718233_61722023_61722284
99402	chr5	+	6484	46	NIC	ENSMUSG00000029516.20	novel	9514	47	NA	NA	-7	-113	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	7.94953217041073	32	56	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCTAACCCCCAGATGT	8474	False	NA	NA	False	NA	NA	NA	115983329	116136444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115983361_115984342_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452_116063559_116064517_116064662_116065894_116066015_116071456_116071628_116071879_116071931_116072637_116072692_116074787_116074929_116076737_116076864_116079895_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119753_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
99403	chr10	+	4058	5	NIC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-45	intron_retention	FALSE	canonical	3	6005	junction_4	257.877393348079	5	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCGCCCCAGCCAAGTGGT	2196	False	NA	NA	False	NA	NA	NA	81012479	81017823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_81012564_81013498_81013714_81013886_81015094_81015179_81015286_81015377
99404	chr17	-	3248	5	ISM	ENSMUSG00000073436.12	ENSMUST00000119848.8	5226	7	869	1569	-1	-1569	3prime_fragment	FALSE	canonical	3	26	junction_1	4.54835134966506	8	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTCTTCCCTGGGTAG	2765	False	NA	NA	False	NA	NA	NA	25113160	25109028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104
99405	chr17	-	2376	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-331	1	intron_retention	FALSE	non_canonical	0	0	junction_2	3296.5121097912	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45882839	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879213_45879254_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
99406	chrM	-	2224	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-75	-1630	-75	1630	mono-exon	FALSE	NA	NA	NA	NA	NA	2	71	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTATATTATTGTGGAAAA	16	True	NA	-6	True	NA	NA	NA	14145	11921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11900_14100
99408	chr15	-	2619	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-92	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1556.05845541441	18	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGGCATGAGTCTCAGTG	666	False	NA	NA	False	NA	NA	NA	36793855	36771017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772145_36772351_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
99411	chr2	+	7068	26	NIC	ENSMUSG00000033852.17	novel	5092	27	NA	NA	2	-31	intron_retention	FALSE	canonical	2	8	junction_11	46.0746524674902	50	95	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAATAAATATTTTTTT	NA	False	NA	NA	False	NA	NA	NA	119857989	119873483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594_119865152_119865400_119865538_119865676_119865806_119866065_119866107_119866285_119866329_119866576_119866632_119866869_119867001_119867227_119867312_119867538_119867577_119868218_119868355_119868976_119869114_119869343_119869567_119869697_119869816_119870109_119870248_119870338_119870444_119870623_119870804_119870958_119871126_119871601_119871789_119871875
99412	chr11	+	2261	5	NNC	ENSMUSG00000010362.10	novel	1124	7	NA	NA	13	-13	intron_retention	FALSE	canonical	3	6	junction_3	478.133349600297	10	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTCTTGTAAATAGTGTG	NA	False	NA	NA	False	NA	NA	NA	101518780	101526913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_101519279_101521063_101521187_101521645_101521806_101524546_101524727_101525613
99413	chr19	+	846	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	71	12	-6	-6	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCAGCTTCTTTTCTTT	4940	False	NA	NA	False	NA	NA	NA	9960080	9962450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
99415	chr17	-	837	3	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4246	15	711	-15	3prime_fragment	FALSE	canonical	3	10930	junction_2	637.5	60	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGTTTTATACAGTCC	NA	False	NA	-138	True	NA	NA	NA	45879951	45878715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783
99416	chrX	+	3381	9	NNC	ENSMUSG00000031353.14	novel	2244	12	NA	NA	6169	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	998.160863475923	3	154	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGCACAAACTATATCTGC	NA	False	NA	NA	False	NA	NA	NA	161550230	161562081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557662_161560767_161560879_161561343
99417	chr16	-	554	1	Intergenic	novelGene_3687	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212029	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99418	chr8	+	2823	27	Antisense	novelGene_ENSMUSG00000032815.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	61	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCCGCGCTGCCTTCCGA	NA	False	NA	NA	False	NA	NA	NA	124013208	124045314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_124013291_124014799_124014990_124015123_124015225_124015461_124015530_124016097_124016231_124016534_124016652_124018135_124018209_124021733_124021795_124021870_124021934_124023034_124023122_124024505_124024565_124024648_124024742_124026536_124026860_124031029_124031167_124031478_124031617_124031989_124032069_124032488_124032605_124033166_124033228_124033868_124033905_124034454_124034539_124035246_124035356_124039318_124039397_124039759_124039856_124039978_124040111_124043099_124043193_124044797_124044911_124045213
99419	chr12	+	2451	5	Genic_Genomic	ENSMUSG00000095470.2	novel	336	1	NA	NA	-9	22905	multi-exon	TRUE	non_canonical	0	0	junction_1	2.5	3	50	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGTACTGGAGAGAAACT	NA	False	NA	NA	False	NA	NA	NA	20004496	20027746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_20004632_20023640_20023768_20023969_20024031_20025367_20025814_20026064
99421	chr15	-	6326	17	NNC	ENSMUSG00000033075.18	novel	6575	18	NA	NA	-72	-69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	53.4494138765805	1	309	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTTTTTTTTTAATTGAT	6753	False	NA	NA	False	NA	NA	NA	97990840	97936693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97990510
99422	chr12	+	5886	24	NIC	ENSMUSG00000020590.17	novel	6231	26	NA	NA	96	-2	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	22.1393592665519	1	34	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGATGTGTTTACTTGG	NA	False	NA	NA	False	NA	NA	NA	35097311	35197476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_35097411_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
99423	chr17	+	4143	16	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	23	-14	intron_retention	FALSE	canonical	3	1413	junction_5	316.321875451081	7	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGCCGGGCAGTGGTG	443	False	NA	NA	False	NA	NA	NA	56610343	56630472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
99424	chr8	+	559	1	Antisense	novelGene_ENSMUSG00000057657.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	149	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGGATTCTTATTACAT	NA	False	NA	NA	False	NA	NA	NA	107989365	107989924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_107989400_107989900
99425	chr6	-	2976	20	NNC	ENSMUSG00000038429.11	novel	3213	20	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	200.622687161443	166	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCAGTTCTTTGGGG	7969	False	NA	NA	False	NA	NA	NA	124806334	124791981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795556_124796316_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
99426	chr5	+	2132	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	1057.95446703579	213	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	299	False	NA	NA	False	NA	NA	NA	77099166	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099279_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
99427	chr14	+	2078	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	43	1102	-7	-6	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	3	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTAATCCTCAGACTCTTT	NA	False	NA	NA	False	NA	NA	NA	30271130	30295575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
99428	chr15	+	4846	32	NNC	ENSMUSG00000022488.10	novel	4992	30	NA	NA	-42510	-1	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_2	4.21359970530981	3	63	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGGATGTTTGC	NA	False	NA	NA	False	NA	NA	NA	103319710	103407235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103319946_103337911_103337955_103363397_103363509_103364266_103364360_103368611_103368669_103369965_103370109_103370928_103371020_103371106_103371245_103372792_103372842_103372932_103373090_103379655_103379713_103379953_103380051_103381194_103381305_103381465_103381599_103381943_103382026_103382226_103382286_103382479_103382626_103384028_103384162_103384404_103384525_103386704_103386851_103387150_103387283_103390386_103390606_103391941_103392073_103394758_103394857_103394972_103395067_103395219_103395303_103395535_103395617_103398418_103398513_103399337_103399455_103399892_103400003_103401647_103401738_103405838
99430	chr4	-	5198	14	NNC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-6	1333	intron_retention	FALSE	non_canonical	0	0	junction_2	284.8714648386	5	52	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGACACTCTCCCTGGTGA	2	True	NA	NA	False	NA	NA	NA	48473428	48429524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_48431084_48433107_48433221_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458716_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48470073_48473265
99431	chr9	-	2556	11	NNC	ENSMUSG00000039048.16	novel	2240	11	NA	NA	3	3011	intron_retention	TRUE	non_canonical	0	0	junction_1	78.8520132907207	5951	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTAGATATGCTAAAAA	NA	False	NA	NA	False	NA	NA	NA	35122229	35112490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35112511_35115521_35116420_35116600_35116706_35116884_35116987_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35121462_35122102
99433	chr4	+	3130	4	Intergenic	novelGene_2051	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	15.1070255914995	6	49	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAACTGAAAGATTCAACA	2315	False	NA	NA	False	NA	NA	NA	146289373	146393539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146368115_146368209_146384326_146384431_146390758
99434	chrM	-	1010	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGGCTCTGCCACC	9986	False	NA	-1	True	NA	NA	NA	3710	2700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
99435	chr11	-	1247	5	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	-2676	-31	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9184.13739485097	2	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGAAATAAACTCAGTAT	NA	False	NA	-20	True	NA	NA	NA	33109953	33102541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33103521_33105998_33106105_33106663_33106748_33106990_33107049_33109933
99436	chr11	-	1065	10	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	0	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	7860.42069838222	2	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATTTTTAAATGAATC	NA	False	NA	NA	False	NA	NA	NA	33113076	33104946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111155_33111547_33111628_33112921
99437	chrM	-	2174	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	167	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTTTTGGCTATAATCTA	9986	False	NA	-1	True	NA	NA	NA	3710	1536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3700
99439	chr5	+	1145	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	278	-12	-2	intron_retention	FALSE	canonical	3	7748	junction_1	3498.23972877789	7	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGTGTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453
99440	chr10	+	1937	1	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	16	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCAGGCTGCACCGTTCC	NA	False	NA	NA	False	NA	NA	NA	62647010	62648947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62647000_62648900
99441	chr17	-	1995	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	45	1315	mono-exon	FALSE	NA	NA	NA	NA	NA	4	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGAACCCTGATTCCCCG	NA	False	NA	NA	False	NA	NA	NA	40159673	40157678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157700_40159700
99442	chr9	+	807	6	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1907.89521724858	115	7	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTTATGGTCCTCACT	NA	False	NA	NA	False	NA	NA	NA	119956852	119960621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959349_119960074_119960232_119960465
99443	chr4	-	4701	2	Intergenic	novelGene_2190	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	68	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGGGTCTTCCTGGGTCG	NA	False	NA	NA	False	NA	NA	NA	156681826	156511683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_156515220_156680661
99444	chr6	+	2515	15	NNC	ENSMUSG00000041671.14	novel	2831	12	NA	NA	9211	23807	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	20	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGCGCCCACCCTTCCGG	4295	False	NA	9	True	NA	NA	NA	142307876	142332790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_142308595_142309268_142309393_142310187_142310382_142311241_142311344_142312446_142312534_142313000_142313116_142313204_142313358_142314200_142314279_142315014_142315187_142318544_142318740_142320544_142320651_142322504_142322687_142323878_142324077_142330254_142330303_142332747
99445	chr11	+	2904	15	ISM	ENSMUSG00000040463.17	ENSMUST00000162048.8	4014	24	4127	-318	1712	-221	3prime_fragment	FALSE	canonical	3	2385	junction_3	211.635721397472	1	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72336309	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72336560_72336719_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
99446	chr8	+	2863	4	NNC	ENSMUSG00000071793.13	novel	948	5	NA	NA	5331	-2300	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	695.149384425151	6	39	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAACATCCATGGCTCCA	NA	False	NA	NA	False	NA	NA	NA	20036045	20043588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20036160_20039783_20039904_20040764_20041032_20041226
99447	chrUn_MU069435v1	-	485	1	Intergenic	novelGene_4729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	604	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	485	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_500
99448	chr17	+	2065	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	-240	24	240	mono-exon	FALSE	NA	NA	NA	NA	NA	29	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGCGGGCGTCGTGCCTC	NA	False	NA	-1	True	NA	NA	NA	40157267	40159332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159300
99449	chr9	-	1591	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	53	150	53	85	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	5	66	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGAAAGAATGTTGTGG	7153	False	NA	NA	False	NA	NA	NA	78388953	78385880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
99450	chr1	+	3679	15	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-7095	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	125.13347975303	1	113	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAACCACAAGTATAC	NA	False	NA	NA	False	NA	NA	NA	132398007	132433389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132398126_132405044_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422077_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
99451	chr4	+	3195	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	375	3	NA	NA	-42603	-234	multi-exon	FALSE	non_canonical	0	0	junction_1	181.910383857278	9	86	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	NA	False	NA	NA	False	NA	NA	NA	145094211	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145094294_145136909_145136997_145138756_145138862_145218634_145218807_145233791_145233946_145257381_145257486_145261385_145261513_145263160
99452	chr6	-	665	2	Antisense	novelGene_ENSMUSG00000063171.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCGAGCTGCGCGCGCAG	NA	False	NA	NA	False	NA	NA	NA	148257091	148256153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_148256683_148256955
99453	chr18	-	3019	10	NNC	ENSMUSG00000033323.15	novel	3713	13	NA	NA	13666	-3	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	73.1959993509731	3	69	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAAGCTGTGTGTTCTCTG	3253	False	NA	NA	False	NA	NA	NA	80499244	80451182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_80451997_80463657_80463846_80477380_80477544_80485226_80485387_80489100_80489311_80490638_80490781_80492455_80493464_80494369_80494537_80495519_80495611_80499168
99455	chr9	-	6644	25	ISM	ENSMUSG00000002028.14	ENSMUST00000002095.11	16461	36	31738	18020	-1375	1360	internal_fragment	FALSE	canonical	2	2	junction_12	2.35702260395516	29	78	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGCCCAGCAGAGCCAGT	6988	False	NA	NA	False	NA	NA	NA	44760856	44732671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_44733817_44733983_44734167_44734524_44734686_44735621_44735701_44735817_44735936_44736686_44736846_44738118_44738257_44740080_44740188_44740374_44740569_44741346_44741421_44741691_44741803_44742520_44742695_44744157_44744343_44745203_44745318_44747098_44747220_44747440_44747537_44747847_44747995_44752267_44752382_44752859_44752992_44753606_44753681_44753829_44754214_44754654_44754720_44756685_44756921_44758149_44758328_44758700
99456	chrX	-	2275	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	-411	-5	-102	5	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	2	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGTGTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	135642512	135633696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
99457	chr4	-	2085	7	NNC	ENSMUSG00000041459.16	novel	1904	7	NA	NA	-67	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	409.190834316812	7	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATATGTGTCTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	148711543	148701326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148701612_148702582_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
99458	chr15	-	2604	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	37	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACAAGACCGTTTTCTCG	9799	False	NA	NA	False	NA	NA	NA	22705091	22699825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22701140_22703708_22704588_22704680
99459	chr4	+	3126	15	FSM	ENSMUSG00000028859.15	ENSMUST00000030673.7	3160	15	26	8	26	-8	multi-exon	FALSE	canonical	0	0	junction_11	2.96922995583236	16	6	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGACATGTACTTGTTT	NA	False	NA	NA	False	NA	NA	NA	125921110	125938224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_125921194_125923555_125923856_125925590_125925715_125925904_125926093_125927962_125928133_125928214_125928369_125929091_125929172_125929558_125929773_125931312_125931502_125931820_125931923_125933298_125933446_125933554_125933690_125936452_125936544_125936696_125936779_125937157
99460	chr17	-	2728	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-9	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	181.804534841375	1	73	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAAAAATTGAGTGTAGCC	2371	False	NA	NA	False	NA	NA	NA	45744476	45702820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730662_45735443_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
99461	chr12	-	1354	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3927.90005172313	1216	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636434_111636595_111636670_111637316_111637483_111637655_111637782_111637858_111638014_111638199_111638408_111638663
99462	chr5	+	4960	13	FSM	ENSMUSG00000029468.18	ENSMUST00000100737.10	4936	13	-24	0	-24	0	multi-exon	FALSE	canonical	3	11	junction_11	5.09015935135848	38	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGAATTCTCTTTGATT	NA	False	NA	NA	False	NA	NA	NA	122781949	122822352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122795074_122795148_122796770_122796868_122801639_122801721_122802607_122802738_122804206_122804344_122808500_122808592_122811417_122811484_122811728_122811879_122814724_122814827_122818869
99463	chr16	-	521	2	Antisense	novelGene_ENSMUSG00000043336.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	10	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	6000	False	NA	NA	False	NA	NA	NA	57225471	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_57212040_57225450
99464	chr13	-	3833	4	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	34	-343	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.3666538560063	4	161	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAACCTTGACTTAGCTCCA	7315	False	NA	NA	False	NA	NA	NA	65496377	65484378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65486144_65486562_65488424_65488791_65488919_65496297
99465	chr7	-	1187	1	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTACGGGACGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	51397630	51396443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51396400_51397600
99466	chr11	+	413	4	ISM	ENSMUSG00000020372.16	ENSMUST00000125166.2	637	6	759	-9	759	-6	3prime_fragment	FALSE	canonical	3	5433	junction_3	652.991577281055	178	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAACTGGCTTCTATATG	NA	False	NA	NA	False	NA	NA	NA	48694737	48696909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_48694796_48694982_48695124_48696371_48696483_48696806
99467	chr8	+	5453	2	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-16	93686	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	197	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATACAATTGCACTAATGA	NA	False	NA	NA	False	NA	NA	NA	20016449	20149184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20021739_20149020
99468	chrX	+	2330	21	ISM	ENSMUSG00000025261.19	ENSMUST00000153687.8	4473	25	88	10343	4	1966	5prime_fragment	FALSE	canonical	3	17	junction_3	38.5606989044545	7	20	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTCAGTGCACTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	150586326	150645686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_150586566_150589715_150589857_150618219_150618289_150619217_150619326_150623051_150623151_150623772_150623980_150625998_150626152_150633712_150633776_150635470_150635549_150636394_150636443_150636519_150636589_150637137_150637238_150639081_150639183_150639468_150639620_150639712_150639841_150640455_150640597_150640803_150640910_150643162_150643265_150643664_150643746_150645293_150645401_150645647
99469	chr11	+	1441	5	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	116	23	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACGAACGTCGTCCGCCGC	1116	False	NA	NA	False	NA	NA	NA	120468929	120472389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120469382_120469606_120470263_120470799_120470884_120471013_120471222_120472348
99470	chr15	-	841	6	Antisense	novelGene_ENSMUSG00000003970.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAGACGGGTCAACGCA	NA	False	NA	NA	False	NA	NA	NA	76790511	76788284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_76788307_76788499_76788649_76788736_76788879_76789015_76789236_76790054_76790172_76790320
99471	chr7	-	1000	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	28	-9	28	9	mono-exon	FALSE	NA	NA	NA	NA	NA	206	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAGTTCTCA	NA	False	NA	NA	False	NA	NA	NA	114305442	114304442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_114304400_114305400
99472	chr17	-	1170	7	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	14	1930	-2	-127	5prime_fragment	FALSE	canonical	3	9263	junction_5	436.726745230928	1	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATCATGGACAGCTGTG	NA	False	NA	NA	False	NA	NA	NA	45884183	45880630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99474	chr9	+	2598	5	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	intron_retention	FALSE	non_canonical	0	0	junction_3	8157.08553957846	1	86	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64083075_64083829_64085300_64085504
99475	chrX	-	5162	39	Antisense	novelGene_ENSMUSG00000093219.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	41	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGGTATCTCCGCCACCG	NA	False	NA	NA	False	NA	NA	NA	150672789	150586632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_150586798_150589270_150589402_150589713_150589855_150618217_150618287_150619212_150619324_150623049_150623149_150623770_150623978_150625996_150626150_150633708_150633774_150635468_150635548_150636393_150636441_150636517_150636587_150637135_150637236_150639079_150639177_150639461_150639619_150639711_150639839_150640453_150640595_150640801_150640909_150643161_150643264_150643663_150643742_150645289_150645401_150645647_150645825_150646867_150646959_150647555_150647769_150653452_150653512_150654471_150654652_150657527_150657775_150659289_150659423_150659806_150659902_150661711_150661902_150663491_150663573_150664068_150664197_150665487_150665724_150666095_150666304_150668575_150668701_150669077_150669170_150669733_150670008_150671377_150671526_150672660
99476	chr17	-	1214	6	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-218	3017	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	46	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGCTCACCTAGGGACGGT	NA	False	NA	NA	False	NA	NA	NA	35821666	35816956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820079_35820296_35820433_35820875_35821037_35821184_35821288_35821355
99477	chrX	+	2181	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-46	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1047.41860927499	8	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCATTTTCTGTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491330_100491571
99478	chr14	-	1214	8	Antisense	novelGene_ENSMUSG00000093156.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTCAATCCCTGTAGGA	1734	False	NA	NA	False	NA	NA	NA	30295568	30290132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_30290313_30290929_30291096_30291911_30292068_30292154_30292289_30292917_30293002_30293106_30293201_30294162_30294286_30295291
99479	chr5	-	1897	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-10	intron_retention	FALSE	non_canonical	0	0	junction_2	2032.30564630422	4	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAAACAGCTTGTGGCT	8921	False	NA	NA	False	NA	NA	NA	142892477	142888879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142889983_142890204_142890680_142890987_142891232_142891318_142891448_142892406
99480	chrM	+	2224	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1264	-3	-1264	3	mono-exon	FALSE	NA	NA	NA	NA	NA	168	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	59	False	NA	27	True	NA	NA	NA	1486	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1500_3700
99481	chr9	+	1310	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1463	155	1445	-155	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	25	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAAACCCTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	64082119	64085793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
99482	chr15	-	4431	8	FSM	ENSMUSG00000089837.10	ENSMUST00000023060.13	1162	8	33	-3302	33	3302	multi-exon	FALSE	canonical	2	3	junction_4	65.4759653675784	38	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAAACGTGGTTTACTCG	NA	False	NA	NA	False	NA	NA	NA	79718405	79670573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79674118_79674466_79674647_79676803_79677052_79678456_79678677_79717712_79717780_79717902_79717969_79718115_79718160_79718343
99483	chr16	-	4918	1	Intergenic	novelGene_3655	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	144	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTCTTGATACAACTTCAG	NA	False	NA	NA	False	NA	NA	NA	43589505	43584587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_43584600_43589500
99484	chr19	+	5039	8	NIC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-20	-5	intron_retention	FALSE	canonical	3	299	junction_1	30.684703361906	39	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTACTGTGTCTAGTA	NA	False	NA	NA	False	NA	NA	NA	38043516	38062864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
99485	chr7	-	1513	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	36	0	4	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	3	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398277	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
99486	chr11	-	4734	7	NIC	ENSMUSG00000039096.11	novel	4203	9	NA	NA	0	-7	intron_retention	FALSE	canonical	3	12	junction_1	10.5514611942296	58	52	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACAGACCTGCGTAGCT	3195	False	NA	NA	False	NA	NA	NA	94440081	94430630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296_94439431_94439808
99487	chrX	-	6112	3	Antisense	novelGene_ENSMUSG00000082890.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	28	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGAGGCCCATTGGACA	NA	False	NA	NA	False	NA	NA	NA	141019683	140675591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_140680582_140869963_140869983_141018580
99488	chrUn_JH584304v1	-	3282	6	Intergenic	novelGene_4668	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	124	junction_5	332.593204981701	1	73	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACTACCATAGCT	NA	False	NA	NA	False	NA	NA	NA	58250	52677	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55702_56985_57152_57410
99489	chr4	+	2058	9	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	4	104725	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.4496698522951	24	21	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146206904	146319729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146207708_146207846_146209452_146209546_146223583_146223676_146251579_146251707_146253158_146253297_146253962_146254485_146255032_146255570_146319635
99490	chrM	-	969	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCATCGGGTAATAATAAT	4643	False	NA	NA	False	NA	NA	NA	11545	10576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10600_11500
99491	chr1	+	3457	16	NNC	ENSMUSG00000036155.14	novel	3216	16	NA	NA	-127	118	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.22710574513201	1	170	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACCATGGGATTATGTA	5706	False	NA	NA	False	NA	NA	NA	127234371	127411559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_127234754_127248340_127248503_127292884_127292958_127294139_127294230_127310657_127310730_127312504_127312667_127315079_127315250_127318480_127318616_127325243_127325378_127339863_127339998_127373978_127374129_127387572_127387720_127396928_127397046_127399237_127399313_127407201_127407360_127410263
99492	chr13	-	2469	8	NNC	ENSMUSG00000074830.5	novel	894	4	NA	NA	-30	39	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	78.1006676393633	1	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAACAAAGACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	66846337	66817952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66819455_66821007_66821069_66821267_66821395_66832180_66832305_66833395_66833621_66834628_66834801_66836256_66836399_66846221
99493	chr19	+	884	2	Genic_Genomic	ENSMUSG00000044065.4	novel	906	1	NA	NA	367	401	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGGCTTTATCATGTAGC	NA	False	NA	NA	False	NA	NA	NA	41448618	41449558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_41448794_41448849
99494	chr4	+	2332	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000082779.2_ENSMUSG00000078498.6	novel	1173	3	NA	NA	-79	182328	multi-exon	FALSE	non_canonical	0	0	junction_2	171.9175170047	1	13	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209633	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147316807_147316880_147337800_147337859_147413438_147413566_147415724_147415863_147416444_147417258_147417427_147418091_147600209
99495	chr15	-	825	5	Fusion	ENSMUSG00000023004.9_ENSMUSG00000072235.7	novel	1803	4	NA	NA	2147	-59	multi-exon	FALSE	non_canonical	0	0	junction_1	2056.15290044296	7	6	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTGTACCTCTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	98849437	98829364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr15_-_98829485_98830919_98831099_98848606_98848896_98849068_98849218_98849349
99496	chr1	+	7259	20	Antisense	novelGene_ENSMUSG00000026491.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	198	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGAGTGGCAGAACCACAGAA	NA	False	NA	NA	False	NA	NA	NA	179572474	179608442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_179574094_179574744_179574828_179576124_179576256_179579875_179581638_179583013_179583220_179585499_179585594_179587825_179587929_179590111_179590527_179591033_179591239_179593442_179593638_179595861_179595968_179596553_179596705_179596873_179598285_179598362_179598509_179602896_179603085_179603572_179603720_179605067_179605124_179605263_179605389_179607168_179607263_179608420
99497	chr8	-	5690	5	NNC	ENSMUSG00000043090.19	novel	3245	4	NA	NA	16	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.0178457688762	54	101	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCACTTGTGTCAAATCC	6885	False	NA	NA	False	NA	NA	NA	70227545	70213973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_70216801_70216858_70219428_70220282_70220344_70221770_70221898_70227439
99498	SIRV3	-	1750	1	Antisense	novelGene_SIRV3A_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAATAAAACGTGCATCCT	NA	False	NA	NA	False	NA	NA	NA	7807	6057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_SIRV3_-_6100_7800
99501	chr10	-	793	4	Genic_Genomic	ENSMUSG00000087350.2	novel	730	1	NA	NA	-765	10114	multi-exon	FALSE	non_canonical	0	0	junction_2	1.88561808316413	4	2	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATCTACCTTCCTGCAA	NA	False	NA	NA	False	NA	NA	NA	7483342	7471733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_-_7472107_7478571_7478752_7481852_7482013_7483262
99502	chr7	-	1786	6	NIC	ENSMUSG00000048065.9	novel	2772	9	NA	NA	-11	-16	intron_retention	FALSE	canonical	1	1	junction_2	18.6161220451522	1	58	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCTTTGCATTTAGCT	NA	False	NA	NA	False	NA	NA	NA	107357214	107349187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_107350474_107351537_107351624_107353052_107353183_107353910_107354018_107356391_107356519_107357164
99503	chr4	-	2716	1	NIC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	19139	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	3	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	7240	False	NA	NA	False	NA	NA	NA	147841151	147838435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_147838400_147841200
99504	chr11	-	3019	16	NNC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	0	-6	intron_retention	FALSE	canonical	1	8	junction_7	284.711893362786	1	76	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATTCAAAAATTTGACTTT	NA	False	NA	NA	False	NA	NA	NA	70860788	70833913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70836188_70838527_70838630_70840098_70840369_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
99505	chr5	+	2978	5	NNC	ENSMUSG00000090015.9	novel	1551	3	NA	NA	-564	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	85.3240147906789	1	96	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAGAGTTGCCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	110080864	110091795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110081882_110088291_110088419_110088605_110088667_110089940_110090156_110090237
99506	chr17	+	1055	3	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	-9	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2091	47	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3027	False	NA	NA	False	NA	NA	NA	35816905	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35821203
99507	chr16	+	3288	7	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_3	665.585623509269	6	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22930014_22930252_22930343_22930566_22930647_22931100
99508	chrM	+	1515	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	67	0	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	5	75	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAACTTAATTTATGAATA	-3	True	NA	22	True	NA	NA	NA	1093	2608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2600
99509	chr3	+	1614	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	11	-13	-1	13	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	89	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTCTGTGTTATTTCTT	8501	False	NA	NA	False	NA	NA	NA	94350642	94356028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
99510	chr3	+	7849	5	Intergenic	novelGene_3153	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	143	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	90872295	91039794	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_90876236_90963272_90963940_91008585_91009748_91011313_91011319_91037719
99511	chr9	+	3993	8	ISM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	-44	1	2	-1	intron_retention	FALSE	canonical	3	229	junction_6	144.954602323258	79	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAGAACCTTTTATAGT	9074	False	NA	NA	False	NA	NA	NA	15217511	15228265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285
99512	chr2	-	3005	5	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	3034	1737	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	507.739290876725	31	62	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	5382	False	NA	NA	False	NA	NA	NA	177266958	177259259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177261434_177261517_177262087_177263226_177263288_177263479_177263607_177266884
99513	chr10	+	2334	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	24	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	120.866028886431	1	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTTTCCATATCATGGA	NA	False	NA	NA	False	NA	NA	NA	75400012	75422014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75400093_75400490_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
99514	chr8	+	4555	7	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-134	-601	multi-exon	FALSE	non_canonical	0	0	junction_1	526.14428207057	4	51	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACCTTTTTAAGCAGGGG	NA	False	NA	NA	False	NA	NA	NA	20697850	20726665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698136_20706294_20706355_20711891_20712265_20717197_20717497_20721120_20721241_20723149_20725248_20725345
99515	chr11	-	3880	22	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	140	977	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	244.815947341186	1	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGCCTTCTGTCCCTTT	NA	False	NA	NA	False	NA	NA	NA	97078567	97052358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060825_97062368_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
99516	chr3	-	5414	12	Intergenic	novelGene_3117	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCGGGAGGTGAAGGGGGA	NA	False	NA	NA	False	NA	NA	NA	41571293	41511264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41511389_41535626_41535708_41543368_41543464_41546123_41546285_41548211_41548389_41551048_41551260_41554454_41554631_41555807_41555916_41558901_41559426_41564236_41564354_41567555_41569023_41569120
99517	chr4	+	5323	3	Genic_Genomic	ENSMUSG00000091542.2	novel	5054	2	NA	NA	-328752	-3856	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	82	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGGTGGTTGCGTTTCCCG	NA	False	NA	NA	False	NA	NA	NA	41878245	42231457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_41882050_42056189_42056202_42229950
99518	chr17	+	790	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-48	1107	-48	-1107	mono-exon	FALSE	NA	NA	NA	NA	NA	15	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCCCTTGCCTCTCGGCGC	NA	False	NA	0	True	NA	NA	NA	40157195	40157985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40158000
99519	chr10	+	576	1	Antisense	novelGene_ENSMUSG00000069682.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTTTTTTTGAGCCAA	NA	False	NA	NA	False	NA	NA	NA	29574800	29575376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_29574800_29575400
99520	chr7	-	3670	1	NIC	ENSMUSG00000092225.2	novel	4073	4	NA	NA	44245	-2491	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	4	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCTTATAAATGTAATC	NA	False	NA	NA	False	NA	NA	NA	42472413	42468743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_42468700_42472400
99521	chrM	-	2055	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTAAAAATCTTCTCACTA	77	True	NA	NA	False	NA	NA	NA	3466	1411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1400_3500
99522	chr10	-	2209	1	Intergenic	novelGene_3472	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	74552819	74550610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74550600_74552800
99523	chr7	-	1579	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	-28	-2	1	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	28	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126398341	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
99524	chr14	+	6783	11	Intergenic	novelGene_596	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	187	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAGCCCCGCTCCCACCT	NA	False	NA	NA	False	NA	NA	NA	65055924	65187301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_65061147_65062713_65062822_65063051_65063142_65064220_65064319_65066036_65066120_65089335_65089491_65098967_65099075_65125022_65125109_65134097_65134576_65140687_65140770_65187027
99525	chr8	+	7172	29	ISM	ENSMUSG00000059854.9	ENSMUST00000043141.7	15783	87	233553	50640	56041	-50640	internal_fragment	TRUE	canonical	1	5	junction_3	9.2493794607078	32	31	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGGGATTAAACTGCCT	NA	False	NA	NA	False	NA	NA	NA	111227161	111286245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111227451_111229557_111229686_111231800_111231932_111232374_111232512_111232725_111232854_111233059_111233252_111233512_111233663_111235515_111235756_111237467_111237631_111239623_111239798_111240745_111240920_111241461_111241636_111245712_111245934_111249703_111249842_111252075_111252260_111254538_111254681_111257680_111257850_111259307_111259926_111261796_111262019_111264936_111265146_111265350_111265534_111266350_111266471_111268152_111268313_111268427_111268601_111276220_111276420_111277904_111278005_111282163_111282264_111283627_111283797_111284260
99526	chr11	+	4119	2	Intergenic	novelGene_2354	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	1950	junction_1	0	3	178	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57446710	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57450386_57450479
99527	chr5	+	3478	8	ISM	ENSMUSG00000029267.18	ENSMUST00000198662.5	2675	16	14810	-1536	870	2	3prime_fragment	FALSE	canonical	3	1607	junction_4	86.0028476035437	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108240840	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
99528	chr12	+	4080	10	NNC	ENSMUSG00000097451.12	novel	3223	26	NA	NA	-452	0	intron_retention	FALSE	non_canonical	0	0	junction_7	316.074885641573	3	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	2000	False	NA	NA	False	NA	NA	NA	109602821	109628150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109604361_109608998_109609087_109609847_109609896_109611695_109611766_109615587_109615677_109616505_109617534_109618292_109618377_109624477_109624556_109626156_109626242_109627179
99529	chr7	-	2298	4	NIC	ENSMUSG00000074129.15	novel	992	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	15796	junction_2	1087.09643853095	1	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778161	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_44775457_44775538_44775662_44775901_44776219_44776414
99530	chrX	-	3529	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	317.912015480348	2	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGCATTAATTGTGCCC	NA	False	NA	NA	False	NA	NA	NA	93256257	93232320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248746_93252982_93253057_93253141_93253270_93255324_93255389_93256170
99531	chr11	-	3158	3	Intergenic	novelGene_2322	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	80	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57450791	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446429_57447849_57450027_57450603
99532	chr7	+	2416	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	304	2	9	1	multi-exon	FALSE	canonical	3	986	junction_1	0	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCTGTGAGTATGGGT	379	False	NA	NA	False	NA	NA	NA	44465815	44480234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
99533	chr17	+	3436	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-30	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	569.858723583091	1	72	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	469	False	NA	NA	False	NA	NA	NA	56610369	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625364_56627236_56627283_56627396_56627543_56629020_56629126_56629355
99534	chr13	+	3027	5	NNC	ENSMUSG00000114777.2	novel	1568	3	NA	NA	-6323	1394	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	25.1035356075593	45	53	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66667719	66678802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66667826_66674049_66674177_66674374_66674436_66676027_66678008_66678049
99535	chr19	-	3718	25	Antisense	novelGene_ENSMUSG00000071650.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	56	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGTGCACGTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	8894024	8875449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_8875523_8879626_8879731_8879883_8879993_8882296_8882423_8884574_8884759_8886041_8886110_8886282_8886372_8886453_8886548_8886793_8886976_8887827_8887981_8888068_8888194_8888235_8888306_8888396_8888523_8888637_8888719_8888957_8889103_8889226_8889324_8889836_8889938_8890072_8890317_8891662_8891729_8891904_8891981_8892063_8892141_8892288_8892401_8892519_8892631_8892763_8892856_8893011
99536	chr1	+	3917	1	Antisense	novelGene_ENSMUSG00000026281.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTCCCTTGTAAACCCC	1541	False	NA	NA	False	NA	NA	NA	93721196	93725113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_93721200_93725100
99537	chr2	-	2644	21	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	-2	0	intron_retention	FALSE	non_canonical	0	0	junction_1	132.468147114693	2	45	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	120234578	120185792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120185987_120186244_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202110_120204387_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
99538	chr11	+	1341	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	-22	-3	-22	3	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	1248	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACTCCAGTTTGTTAAT	4514	False	NA	NA	False	NA	NA	NA	106146957	106153949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
99540	chr12	+	5276	1	Intergenic	novelGene_4368	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	130	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	68604994	68610270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605000_68610300
99541	chr1	-	2974	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	21	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	644.891742368438	3	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTCTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	20890515	20873195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887644_20888016_20888130_20890354
99542	chr13	-	9840	5	Antisense	novelGene_ENSMUSG00000080698.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	124	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	23513685	23354443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_23356250_23357787_23361357_23508978_23509102_23509265_23510673_23510750
99543	chr16	+	1640	7	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	0	-179	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	217.10321406086	21	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCTTTTGCAGCACAGGC	NA	False	NA	NA	False	NA	NA	NA	48130839	48139907	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136246_48137744_48137847_48138995
99544	chr17	-	2507	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-4	-3	intron_retention	FALSE	canonical	0	0	junction_8	3295.6876080721	23	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884185	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882336_45882546_45882690_45882838_45884092
99545	chr4	+	1795	3	ISM	ENSMUSG00000078503.10	ENSMUST00000105741.2	3044	5	15845	1117	15845	-1117	3prime_fragment	FALSE	canonical	3	98	junction_1	220	2	108	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCACAAATGTAGTGAATG	2544	False	NA	NA	False	NA	NA	NA	145257298	145264641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_145257486_145261385_145261513_145263160
99546	chr7	-	4350	20	NIC	ENSMUSG00000054662.9	novel	3019	24	NA	NA	-5	279	intron_retention	FALSE	canonical	3	95	junction_5	24.7543051461498	91	74	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCTTTGTCTAAGCGC	NA	False	NA	NA	False	NA	NA	NA	140697724	140680845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
99547	chrX	+	1001	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	234	-25	-234	mono-exon	FALSE	NA	NA	NA	NA	NA	120	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACCAATGACTTCATCAT	NA	False	NA	NA	False	NA	NA	NA	13068784	13069785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069800
99548	chr7	-	1983	11	Fusion	ENSMUSG00000114515.3_ENSMUSG00000030695.17	novel	1460	9	NA	NA	-41	0	multi-exon	FALSE	canonical	0	0	junction_9	9999.42557350171	1	63	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCCACTCCCTCATCT	8393	False	NA	NA	False	NA	NA	NA	126408321	126395120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_-_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459_126399531_126399676_126400167_126406855_126407036_126407267_126407409_126408041
99549	chr4	+	2375	3	NIC	ENSMUSG00000012126.17	novel	524	5	NA	NA	-7	114	intron_retention	FALSE	canonical	3	96	junction_2	3	2	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCACCTTCCCGCCCACG	NA	False	NA	NA	False	NA	NA	NA	133851354	133853925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_133852266_133852376_133853592_133853676
99550	chr8	+	2912	18	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	2993	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	809.36352882948	1	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111763540	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769872_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
99551	chr2	-	4403	2	NIC	ENSMUSG00000006471.19	novel	4517	12	NA	NA	928	-33	intron_retention	FALSE	canonical	3	179	junction_1	0	3	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGTTCTCAATAAACAG	NA	False	NA	NA	False	NA	NA	NA	25139426	25134865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25138759_25138916
99554	chr13	-	2274	4	NNC	ENSMUSG00000072066.8	novel	1457	4	NA	NA	15	-467	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6.12825877028341	3	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGTTAAAGTTTGCATGTC	NA	False	NA	NA	False	NA	NA	NA	62771979	62751293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62753195_62755186_62755314_62770760_62770879_62771851
99555	chr2	-	6803	6	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.4	16	173	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCAAGTCCAGAGCTTC	5842	False	NA	NA	False	NA	NA	NA	162926602	162914830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162916722_162917552_162919807_162921511_162922140_162922382_162922742_162924468_162924618_162925080
99556	chr4	+	1990	10	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCCTAAGGAGCGCAGTG	258	False	NA	NA	False	NA	NA	NA	137469057	137523595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471141_137473713_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481300_137486006_137486043_137523551
99557	chr2	-	2596	7	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	106	multi-exon	FALSE	canonical	0	0	junction_1	62.8640508469577	176	68	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGAAGTTGCTCTGA	NA	False	NA	NA	False	NA	NA	NA	156681710	156631625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
99558	chr17	+	5509	25	NNC	ENSMUSG00000015127.15	novel	4779	15	NA	NA	7	5683	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	26.5485666070485	2	117	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGTCACGTGAGTGACAGC	NA	False	NA	NA	False	NA	NA	NA	25407377	25459100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_25407467_25408439_25408650_25418740_25418918_25420015_25420150_25424572_25424709_25427062_25427181_25428527_25428613_25429777_25429861_25432020_25432081_25437551_25437730_25447556_25447641_25449180_25449384_25449494_25449750_25450685_25451914_25452064_25453697_25453781_25453863_25453952_25454085_25454154_25454239_25454318_25454431_25454504_25454602_25454678_25454761_25454827_25454884_25458747_25458816_25458886_25458944_25459032
99559	chr4	+	2299	3	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14303	777	multi-exon	FALSE	non_canonical	0	0	junction_2	29.5	6	32	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145159006	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036_145177052_145177096
99561	chr14	+	941	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-101	-155	-1	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	24	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	46321483	46322424	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
99563	chr2	-	4277	5	Antisense	novelGene_ENSMUSG00000078886.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1886	126	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAGAACAGATCACACAGAA	NA	False	NA	NA	False	NA	NA	NA	175773402	175760681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_175760737_175767760_175767886_175768090_175768153_175769309_175772023_175772080
99564	chr2	-	1054	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11406	181	multi-exon	FALSE	non_canonical	0	0	junction_1	0	73	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426247	11413660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414414_11425946
99565	chr7	-	2925	9	NNC	ENSMUSG00000037552.18	novel	4623	19	NA	NA	-45	-211	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	11.5427195668958	1	55	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGCTCCTGATGCCGCTCT	NA	False	NA	NA	False	NA	NA	NA	28064962	28059240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28060687_28061232_28062134_28062250_28062437_28063891_28063935_28064009_28064058_28064156_28064252_28064341_28064376_28064706_28064794_28064877
99566	chr17	-	2512	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5	3	5	-3	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	5	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99567	chr11	-	1202	12	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5898.47077954872	7	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCACTGTTTCTATTTGCT	NA	False	NA	NA	False	NA	NA	NA	33113061	33102511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102705_33102765_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
99568	chr4	-	3988	5	Antisense	novelGene_ENSMUSG00000083704.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	69	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCACTTCCTCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	147145229	147106289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147106451_147107808_147107911_147136963_147137046_147140053_147140182_147141714
99569	chr7	+	3367	7	Intergenic	novelGene_2889	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	24	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATCAGGAATTCAAGGCCC	7937	False	NA	NA	False	NA	NA	NA	23393828	23867501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_23393928_23394043_23394178_23514707_23514858_23527101_23527313_23641326_23641329_23744358_23744648_23865019
99570	chr3	+	2293	20	NIC	ENSMUSG00000028034.16	novel	2552	20	NA	NA	71	0	combination_of_known_junctions	FALSE	canonical	1	416	junction_13	332.523108563197	1	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	NA	False	NA	NA	NA	151916228	151938409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
99571	chr16	-	500	1	Intergenic	novelGene_3828	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99572	chrX	-	5363	5	Intergenic	novelGene_3960	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	45	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCCAAGTTCTGCTCAGG	5517	False	NA	NA	False	NA	NA	NA	74363042	74320481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_74320533_74320805_74320986_74321119_74321299_74348090_74352732_74362730
99573	chrX	+	1293	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-58	-25	58	mono-exon	FALSE	NA	NA	NA	NA	NA	9	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
99574	chr1	-	4480	12	NNC	ENSMUSG00000073643.12	novel	4551	12	NA	NA	6	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	261.884019499895	1	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTAATTTGTGTAATTTT	NA	False	NA	NA	False	NA	NA	NA	79739432	79679985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692714_79702361_79702475_79704282_79704434_79707372_79707428_79711522_79711591_79717778_79717847_79739280
99575	chr4	+	3939	7	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	60	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	187.323027593157	1	71	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146093453	146135328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126784_146126867_146129876_146130004_146131535_146132548_146132631_146133502_146133668
99576	chr19	-	3749	1	ISM	ENSMUSG00000046138.16	ENSMUST00000175726.8	7524	8	86446	911	24551	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGTTTGAATACCAT	NA	False	NA	NA	False	NA	NA	NA	29696461	29692712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_29692700_29696500
99577	chr7	-	1526	8	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-15	-6	intron_retention	FALSE	canonical	3	19253	junction_3	578.545678439323	48900	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398357	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
99578	chr10	-	5115	22	FSM	ENSMUSG00000059901.13	ENSMUST00000092486.11	5188	22	73	0	73	0	multi-exon	FALSE	canonical	2	7	junction_20	4.41446807041021	32	47	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGCCCTTGGTGTTTTGT	5015	False	NA	NA	False	NA	NA	NA	61109144	61032890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_61034739_61036141_61036253_61036954_61037085_61038601_61038810_61040625_61040759_61041142_61041312_61043078_61043243_61047366_61047448_61048902_61049027_61049308_61049443_61054136_61054313_61057636_61057786_61058562_61058677_61060051_61060185_61061115_61061260_61062885_61062992_61065434_61065583_61066196_61066281_61081704_61081896_61085382_61085540_61106635_61107037_61108934
99579	chr1	-	2610	15	ISM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	2949	38	2897	0	3prime_fragment	FALSE	canonical	3	2257	junction_11	182.897498337072	4	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCTTTGTGCTTTAA	NA	False	NA	NA	False	NA	NA	NA	20887587	20873229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466
99580	chr8	+	2813	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-13	-2214	multi-exon	FALSE	canonical	3	200	junction_2	399.990234255788	2	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGACAGACAGACAGACA	NA	False	NA	NA	False	NA	NA	NA	20697971	20725052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149
99581	chr7	+	1178	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	48	6	48	-6	mono-exon	FALSE	NA	NA	NA	NA	NA	11	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCACCCACAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396442	51397620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
99582	chr19	+	2442	12	ISM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	1752	0	1117	0	3prime_fragment	FALSE	canonical	3	364	junction_11	251.075965587843	3	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	2586	False	NA	NA	False	NA	NA	NA	6415703	6427226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
99583	chr6	-	3119	19	Antisense	novelGene_ENSMUSG00000034269.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	51	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGGGGCAGAAAAGGCGG	NA	False	NA	NA	False	NA	NA	NA	113098676	113054536	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113054672_113081893_113082083_113082625_113082721_113082875_113083101_113086382_113086575_113086842_113086952_113087277_113087485_113087588_113087628_113087822_113087882_113088314_113088496_113091802_113092045_113092485_113092638_113092965_113093089_113093745_113093848_113094326_113094577_113095216_113095305_113096375_113096633_113097799_113098125_113098527
99584	chr2	+	4960	8	NIC	ENSMUSG00000042369.9	novel	1898	10	NA	NA	-6	0	intron_retention	FALSE	canonical	3	321	junction_1	18.1715184184661	11	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATTTATATGAA	NA	False	NA	NA	False	NA	NA	NA	76200321	76214112	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76209107_76209261_76209426_76210708
99585	chr9	+	1319	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1462	147	1444	-147	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	3	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082118	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
99586	chr5	+	3199	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4932	0	intron_retention	FALSE	non_canonical	0	0	junction_3	609.08056026185	13	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208607	108256870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255844_108256602
99587	chr13	+	3312	1	Intergenic	novelGene_1456	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTCATCAAAGACTACTGT	NA	False	NA	NA	False	NA	NA	NA	66931474	66934786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66931500_66934800
99588	chr8	+	4273	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	0	-767	multi-exon	FALSE	canonical	0	0	junction_1	634.617491092075	166	57	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATAGGTGTGGCACC	NA	False	NA	NA	False	NA	NA	NA	19834761	20045121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20026680_20026747_20030550_20030924_20035860_20036160_20039783_20039904_20041811
99589	chr5	-	1686	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	156	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1654.6796668842	2	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	9978	False	NA	NA	False	NA	NA	NA	142891420	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889413_142889514_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
99590	chr6	-	4492	23	NNC	ENSMUSG00000012535.15	novel	4251	23	NA	NA	-3	2	intron_retention	FALSE	non_canonical	0	0	junction_1	227.520555787351	6	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTTTTTATTTCCCTT	10	True	NA	NA	False	NA	NA	NA	29609615	29540823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29540969_29541559_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29561420_29562856_29562934_29565207_29565264_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
99591	chrM	-	686	1	Antisense	novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	17	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACCCAATTTTAAGTTTAG	10017	False	NA	NA	False	NA	NA	NA	2392	1706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1700_2400
99593	chr16	+	2790	10	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	675	junction_9	454.50977525513	23	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
99594	chr7	+	1570	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	14	0	-13	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	5	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTGAACAGTGATGGCTC	NA	False	NA	NA	False	NA	NA	NA	46495266	46505037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
99595	chr2	-	3478	4	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-10762	4610	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	236.173664916307	10	109	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCTCTCATATCTGTGT	NA	False	NA	NA	False	NA	NA	NA	176969591	176951836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176952430_176954652_176957402_176958542_176958604_176969516
99596	chr16	+	2817	17	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-35928	-25	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGCCAGCACCCAGCCCGC	NA	False	NA	NA	False	NA	NA	NA	16131138	16176850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16131907_16132123_16132290_16134199_16134308_16134465_16134641_16137313_16137372_16139446_16139538_16141190_16141290_16141489_16141641_16141837_16141960_16147666_16147869_16149859_16149997_16154716_16154876_16156452_16156543_16158858_16158932_16159285_16159332_16163860_16164010_16176627
99597	chr1	+	1598	9	Antisense	novelGene_ENSMUSG00000026491.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACGGTTTGGGTCTAGAAA	NA	False	NA	NA	False	NA	NA	NA	179581475	179596684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_179581636_179583012_179583220_179585499_179585594_179587825_179587929_179590112_179590523_179591047_179591239_179593442_179593631_179595853_179595968_179596553
99598	chr7	+	2837	26	NNC	ENSMUSG00000056394.21	novel	3174	28	NA	NA	6067	-2	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	417.355165776105	1	76	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGGTGAGGAGGTCTA	2403	False	NA	NA	False	NA	NA	NA	13019257	13045348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13019319_13020483_13020611_13021099_13021215_13022589_13022686_13023313_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
99599	chr17	+	2976	15	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-7	-29	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	609.316646342609	26	6	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGCAATAAAATAAAATTCT	413	False	NA	NA	False	NA	NA	NA	56610313	56630457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627247_56629656
99600	chr2	+	3621	2	Antisense	novelGene_ENSMUSG00000086563.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	89	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGACTGTGGCGCTCAAAT	NA	False	NA	NA	False	NA	NA	NA	150544665	150548814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_150547981_150548508
99601	chr13	+	2683	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	37	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	82.2070556582584	3	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	NA	False	NA	NA	NA	97619245	97633515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97630912_97631899_97631942
99602	chr5	-	1025	4	NNC	ENSMUSG00000029580.15	novel	861	3	NA	NA	0	-12	intron_retention	FALSE	non_canonical	0	0	junction_1	1924.77392611877	59	7	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACACAAACAGCTTGTGG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889521_142891048_142891232_142891318_142891448_142892406
99603	chr5	+	380	1	Intergenic	novelGene_953	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	94	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197795	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
99604	chr14	-	5279	20	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-75	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	76.7610603614335	2	86	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655312	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54654054_54654228_54654833
99605	chr2	-	781	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11337	176	multi-exon	FALSE	non_canonical	0	0	junction_1	0	112	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426178	11413665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414099_11425830
99606	chr11	-	1029	9	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8882.45116701325	4	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATAAGGATGTATGTGAC	NA	False	NA	NA	False	NA	NA	NA	33113076	33104928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106676_33106694_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
99608	chr15	-	1025	7	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	992.609020040956	1	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCCTTTGTGTGTATT	NA	False	NA	NA	False	NA	NA	NA	51728879	51649960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51661008_51661063_51662618_51662756_51705863_51706021_51728717
99609	chr15	+	2755	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	57	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCAGCGGTGGCGGCGA	NA	False	NA	NA	False	NA	NA	NA	36771013	36793780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773014_36775474_36775578_36775658_36775823_36776488_36776614_36790927_36791235_36793724
99610	chr13	+	3869	3	NIC	ENSMUSG00000062822.9	novel	978	4	NA	NA	0	-63	intron_retention	FALSE	canonical	3	115	junction_1	7.5	13	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCTGCAGATGTGGAA	NA	False	NA	NA	False	NA	NA	NA	119599309	119606298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_119602841_119603402_119603493_119606050
99611	chr9	+	2016	7	NIC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	37	0	intron_retention	FALSE	canonical	0	0	junction_3	74.2263804557083	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	108174157	108179501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_108174495_108174910_108174992_108175966_108176099_108176943_108177090_108177732_108177914_108178271_108178428_108178518
99612	chr5	+	285	1	Antisense	novelGene_ENSMUSG00000060419.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGGGACGTCCGTTCA	847	False	NA	NA	False	NA	NA	NA	129205176	129205461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_129205200_129205500
99613	chr5	-	3399	12	NNC	ENSMUSG00000036980.14	novel	2304	15	NA	NA	2682	-4	intron_retention	FALSE	non_canonical	0	0	junction_3	207.987920819002	11	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTTTGTGAGCCTCCCG	4655	False	NA	NA	False	NA	NA	NA	138182785	138176885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_138177410_138177674_138177873_138178041_138178722_138178771_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181984_138182100_138182188_138182593
99614	chr7	-	2394	22	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.21295885499998	35	22	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGCGGGAGGGGGCGG	9273	False	NA	NA	False	NA	NA	NA	13045351	13012775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016462_13019176_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025419_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
99615	chrM	+	1820	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	4	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAATCTCGATAATAATAAA	-4	True	NA	4	True	NA	NA	NA	11741	13561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13600
99616	chr2	+	1156	1	Antisense	novelGene_ENSMUSG00000096006.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGCGAGGCACAGAGTCGC	NA	False	NA	NA	False	NA	NA	NA	113750190	113751346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_113750200_113751300
99617	chr17	-	1685	4	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4128.13589892581	3	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36149124	36145696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146932_36147054_36147166_36147519_36147631_36148896
99618	chrY	+	3639	5	Intergenic	novelGene_4706	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	8.66025403784439	6	90	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	47718852	47725614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_47719285_47719353_47719436_47719601_47722351_47723786_47723953_47725404
99620	chr7	+	1522	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	64	2	33	-1	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	2	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTCTGCTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	46495326	46505049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
99621	chr2	-	1880	12	Antisense	novelGene_ENSMUSG00000099091.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.287479787288034	3	48	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGGAGCGCACAGAACCAC	9712	False	NA	NA	False	NA	NA	NA	162922732	162896577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162896659_162901418_162901513_162903441_162903509_162904377_162904467_162906196_162906419_162910073_162910234_162914541_162914834_162916300_162916722_162917552_162917696_162919706_162919807_162921511_162921627_162922636
99622	chr9	+	644	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	58	-212	58	212	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGCACC	NA	False	NA	NA	False	NA	NA	NA	96777768	96778412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777800_96778400
99623	chr16	+	2798	28	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	66	-137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	346.731012546799	1	78	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCGGCTCCCGACCGCTT	NA	False	NA	NA	False	NA	NA	NA	48251665	48451126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270410_48270457_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407506_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
99624	chrX	+	1587	5	Intergenic	novelGene_4110	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	51	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCANNNNNNNNNNNNNNN	5410	False	NA	NA	False	NA	NA	NA	169082192	169095683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_169082627_169083493_169083650_169091575_169091787_169091937_169092048_169095007
99625	chr8	-	5453	2	Intergenic	novelGene_1586	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAAAGTCCTCCGTGCG	NA	False	NA	NA	False	NA	NA	NA	20149184	20016449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_20021707_20148988
99626	chr14	-	797	6	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	26	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGCGGGCGGAAAAGGCC	NA	False	NA	NA	False	NA	NA	NA	76085738	76082787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082897_76083056_76083129_76083640_76083834_76084133_76084238_76084681_76084801_76085538
99627	chr17	-	2833	8	NIC	ENSMUSG00000024045.7	novel	3260	12	NA	NA	1	3257	intron_retention	FALSE	canonical	3	19	junction_6	180.02834243983	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAGATCCATTCAAAGG	NA	False	NA	NA	False	NA	NA	NA	32540118	32529570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32529646_32529926_32530069_32531259_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32537744_32537784_32540058
99628	chr4	+	2470	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-18	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	82.8322853723112	51	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033849	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146062389_146062784
99629	chr13	-	4992	1	Intergenic	novelGene_1481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	24	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGAGTAAGGGGGTATTT	NA	False	NA	NA	False	NA	NA	NA	80854192	80849200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_80849200_80854200
99630	chrM	+	1001	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	25	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14956_15098
99631	chr11	+	8623	41	NNC	ENSMUSG00000042298.19	novel	3410	10	NA	NA	6594	75998	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	38	51	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTCTGCTTTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	62206461	62295275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62208855_62210189_62210368_62211820_62212042_62212215_62212274_62216313_62216458_62217933_62218076_62220266_62220481_62220801_62220966_62221621_62221751_62224845_62224985_62225323_62225486_62228368_62228523_62228926_62229074_62229683_62229898_62231236_62231458_62233823_62234177_62235456_62235714_62236059_62236144_62240219_62240322_62242204_62242375_62244061_62244157_62245190_62245299_62245396_62245510_62249675_62249842_62250586_62250760_62257788_62257984_62260117_62260248_62263901_62264447_62267458_62267587_62269339_62269480_62272232_62272297_62273986_62274206_62275547_62275672_62280516_62280621_62281806_62281858_62283328_62283510_62285963_62286057_62289091_62289263_62292025_62292095_62294609_62294678_62295235
99632	chr4	+	4824	17	NIC	ENSMUSG00000029056.14	novel	2706	20	NA	NA	-4	-5	intron_retention	FALSE	canonical	3	67	junction_13	28.5689270668326	18	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGCTCATCTGGTGAGAA	NA	False	NA	NA	False	NA	NA	NA	155048585	155065386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063411_155063483_155063948_155064050_155064182_155064252_155064951
99633	chr6	+	2247	14	Antisense	novelGene_ENSMUSG00000029782.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGCCACTCCCTACTGCAC	NA	False	NA	NA	False	NA	NA	NA	30482450	30509711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_30482990_30487378_30487447_30489290_30489392_30489476_30489590_30491085_30491186_30492597_30492724_30494738_30494834_30497165_30497240_30497818_30497992_30501898_30502102_30505731_30505978_30506787_30506930_30508631_30508802_30509614
99634	chr4	-	4546	19	NIC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	-7	767	intron_retention	FALSE	canonical	3	324	junction_5	88.2331542345214	3	67	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGGTATCCTATAAAAACT	-12	True	NA	NA	False	NA	NA	NA	34614920	34570028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
99635	chr7	-	1915	6	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-13	-4	intron_retention	FALSE	canonical	3	19619	junction_5	500.093991165661	95	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGAGTCTGTTGTTCATG	NA	False	NA	NA	False	NA	NA	NA	126398355	126394411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395928_126396025_126396081_126396508_126396949_126398216
99636	chr12	+	3335	10	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	304	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAACACAGAGGACGACTC	NA	False	NA	NA	False	NA	NA	NA	110656841	110662115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658088_110658551_110658880_110659035_110659305_110659451_110659602_110659745_110659937_110660144_110660311_110660456_110660776_110661002_110661137_110661483_110661852_110661951
99637	chr7	-	3047	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.188852574577511	1	11	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAATTCGCGCCACACA	9273	False	NA	NA	False	NA	NA	NA	13045351	13012807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016469_13019182_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
99638	chr13	+	3345	6	Antisense	novelGene_ENSMUSG00000114262.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	15.7429349233235	10	57	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	7407	False	NA	NA	False	NA	NA	NA	66737236	66747871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66737350_66741404_66741482_66741563_66741770_66744311_66744439_66744638_66744700_66745110
99639	chrX	-	468	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	-24	-36	-24	36	mono-exon	FALSE	NA	NA	NA	NA	NA	7	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAACTAA	NA	False	NA	NA	False	NA	NA	NA	51861650	51861182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_51861200_51861600
99641	chr17	+	548	6	NNC	ENSMUSG00000037805.16	novel	511	6	NA	NA	0	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	3325.42969253599	19	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTTGGTGTGCCTGTGA	NA	False	NA	NA	False	NA	NA	NA	28547559	28550004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28547593_28547784_28547860_28547940_28548022_28548347_28548402_28549567_28549672_28549803
99642	chrM	-	2549	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	57	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTTTTGATTTATATAAT	1	True	NA	7	True	NA	NA	NA	3702	1153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1200_3700
99643	chr16	+	5938	17	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-36950	-83	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	137	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGCTTGCTTCCTCTTC	NA	False	NA	NA	False	NA	NA	NA	16130116	16176792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16131907_16132123_16132290_16134199_16134308_16134465_16136706_16137315_16137369_16139444_16139544_16141201_16141290_16141489_16141641_16141837_16141960_16147666_16147877_16149867_16149997_16151692_16151817_16154717_16154876_16156452_16156542_16158858_16158948_16163852_16164010_16176627
99644	chr11	-	1158	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-83	-73	83	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACAATTTCCATCCCAGA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284900_20286100
99645	chr7	-	436	2	FSM	ENSMUSG00000050708.17	ENSMUST00000211694.2	604	2	160	8	160	-8	multi-exon	FALSE	canonical	3	56898	junction_1	0	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACAGCAGCTGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	45108063	45107376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958
99646	chr2	-	3953	5	Fusion	ENSMUSG00000078903.11_ENSMUSG00000078899.10	novel	4402	5	NA	NA	-2017	-34	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	157	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATACAGGAGAGAGACCCT	4439	False	NA	NA	False	NA	NA	NA	175171408	175036740	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_175037024_175037528_175037696_175071277_175071329_175166561_175167870_175169264
99647	chr1	-	739	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-66	5	-66	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	6	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACATAATGACCCACCAAA	NA	False	NA	NA	False	NA	NA	NA	24653798	24653059	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653800
99649	chr16	+	564	1	Intergenic	novelGene_3800	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	177	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
99650	chr1	+	3309	23	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-95	-257	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	706.635411914731	2	108	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATATAGATTTTCTTTT	3349	False	NA	NA	False	NA	NA	NA	180396695	180428560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180396719_180401238_180401335_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420464_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
99652	chr4	+	1384	7	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	368	746	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	208.880946953043	1	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTGTGTGAGGAGCTT	5416	False	NA	NA	False	NA	NA	NA	89055726	89098457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070289_89089364_89089468_89090381_89090622_89095039_89095163_89097704
99654	chr13	-	2768	8	Antisense	novelGene_ENSMUSG00000114016.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	6	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCGGACTACAACTCCCAG	NA	False	NA	NA	False	NA	NA	NA	65445609	65426625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65426800_65427072_65427155_65428075_65428201_65432732_65432822_65439770_65440119_65442208_65442297_65443411_65443540_65443875
99655	chr11	-	477	1	Intergenic	novelGene_2508	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGACCTGGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	108902948	108902471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902500_108902900
99656	chr4	-	9209	4	Intergenic	novelGene_2105	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	172	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAGAAGAAAGATGAAACC	NA	False	NA	NA	False	NA	NA	NA	146526627	146500235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146500540_146502748_146502848_146508050_146514647_146524417
99657	chr6	+	1550	5	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	933	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2348.71134880385	118	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	4721	False	NA	NA	False	NA	NA	NA	117884742	117902583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117884841_117894430_117894560_117896059_117896121_117900668_117901234_117901886
99658	chr6	-	4455	5	Antisense	novelGene_ENSMUSG00000087379.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	30	89	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCCCCCTCCCCCTCCCT	NA	False	NA	NA	False	NA	NA	NA	31831289	31776304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_31778199_31778414_31778843_31778881_31779737_31780210_31780264_31830064
99659	chr14	+	1221	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-183	-702	-183	702	mono-exon	FALSE	NA	NA	NA	NA	NA	4	72	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATATTTTACAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	13669254	13670475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
99660	chr17	+	2472	11	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1095	29	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCGAACGCCCCCGACC	NA	False	NA	NA	False	NA	NA	NA	45878715	45884193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879491_45879785_45880015_45880179_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881930_45882113_45882337_45882548_45882692_45882838_45884092
99661	chr8	-	4116	19	Intergenic	novelGene_1745	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	46	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACCCGCCACAACCGGT	NA	False	NA	NA	False	NA	NA	NA	111782023	111760546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760575_111763538_111763704_111766761_111766951_111767226_111767374_111768108_111768299_111768869_111769016_111769292_111769440_111769868_111769971_111770270_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777162_111779044_111779152_111779820_111780642_111780762_111780842_111781138
99662	chr17	+	2850	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-498	-503	-498	503	mono-exon	FALSE	NA	NA	NA	NA	NA	6	125	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCGGGTACCTAGCTGTC	NA	False	NA	NA	False	NA	NA	NA	40156745	40159595	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40156700_40159600
99663	chr10	+	1669	6	ISM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	6264	6	-806	-6	3prime_fragment	FALSE	canonical	3	1491	junction_2	103.575286627651	6	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCTCTGTCTTCCCTGA	2169	False	NA	NA	False	NA	NA	NA	79696765	79700187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
99665	chr4	-	1236	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-162	-72	162	mono-exon	FALSE	NA	NA	NA	NA	NA	23	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGTTCGCTGCACCCAA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
99666	chr4	-	3500	13	NIC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	0	0	intron_retention	FALSE	canonical	3	774	junction_10	215.242692481456	2	71	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484675	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116462012_116462105_116462192_116462880_116462961_116467599_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
99667	chr1	+	3877	15	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-586	6	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	124.089171360678	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACATGCTTGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	132404516	132433403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132404867_132405044_132405266_132411789_132411816_132412483_132412657_132417325_132417416_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
99668	chr5	-	2070	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-45	-84	-45	84	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833600	5831530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
99669	chr13	-	2460	12	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3196.58073262123	2	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4760	False	NA	NA	False	NA	NA	NA	58550321	58539052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542174_58542295_58542600_58542978_58543108_58543387_58543502_58544640_58544705_58547736_58547805_58548146_58548232_58550206
99670	chr1	-	3788	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	150	-2533	150	-192	multi-exon	FALSE	canonical	3	1179	junction_1	0	89	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTAGTGGAATTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	182110219	182103528	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_182107284_182110186
99671	chr13	+	3063	7	NNC	ENSMUSG00000095909.3	novel	449	3	NA	NA	-4607	1318	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	97.5780314528953	7	28	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66256686	66271968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66256769_66258081_66258269_66267450_66267578_66267777_66267839_66269026_66269485_66269736_66270325_66270408
99673	chr9	-	4479	19	Intergenic	novelGene_1010	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	23	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGGCCTCCGCTTACT	NA	False	NA	NA	False	NA	NA	NA	35416199	35363358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_35363472_35363954_35364227_35365595_35365743_35366615_35366763_35367743_35368031_35368691_35368961_35375168_35375524_35381159_35381449_35382278_35382454_35384727_35384860_35388170_35388375_35389244_35389428_35389878_35389984_35394391_35394515_35398043_35398267_35400268_35400537_35403140_35403219_35414453_35414714_35415350
99674	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	90	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
99675	chr7	-	1218	7	Intergenic	novelGene_2995	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	12	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCTCCCGCGGGGAGCG	NA	False	NA	NA	False	NA	NA	NA	96344117	95859464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_95859616_96004561_96004617_96085964_96086063_96199213_96199504_96202681_96202954_96293204_96293415_96343975
99676	chr17	+	609	2	NNC	ENSMUSG00000024180.15	novel	1707	7	NA	NA	79	-3390	intron_retention	FALSE	canonical	0	0	junction_1	0	1	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTCTGGGCAGGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	26336881	26337926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_26337404_26337839
99678	chr10	-	1475	8	ISM	ENSMUSG00000025403.6	ENSMUST00000219239.2	2238	12	2675	194	-931	-178	3prime_fragment	FALSE	canonical	3	1924	junction_2	77.8858400585925	1	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127355580	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498
99679	chr2	+	1215	4	NNC	ENSMUSG00000059005.14	novel	754	6	NA	NA	1150	383	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	4870.03839820591	2	23	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACTGGCTGGCATGCTTT	NA	False	NA	NA	False	NA	NA	NA	75493982	75496848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75494059_75495371_75495495_75495577_75495641_75495895
99680	chr7	-	1865	3	NNC	ENSMUSG00000045948.9	novel	722	3	NA	NA	-1183	0	intron_retention	FALSE	canonical	3	18	junction_2	460.5	3	18	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGTGCGGTGTCTGT	461	False	NA	NA	False	NA	NA	NA	28442428	28439066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28439665_28440911_28440980_28441229
99681	chr14	-	1420	10	Antisense	novelGene_ENSMUSG00000021939.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAGTACCCGCGCAGCT	NA	False	NA	NA	False	NA	NA	NA	63380095	63359942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_63360011_63370760_63370915_63371411_63371508_63373075_63373164_63373850_63373973_63375480_63375566_63375797_63375942_63376445_63376561_63379178_63379314_63379682
99682	chr5	+	343	1	Intergenic	novelGene_913	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	475	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCATGCCGGTGGTCCCGG	NA	False	NA	NA	False	NA	NA	NA	146197788	146198131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
99683	chr5	+	5004	30	NNC	ENSMUSG00000045482.17	novel	11581	63	NA	NA	-1574	-2371	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_28	31.6413838198596	2	99	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTACAGATTACTGGACCT	NA	False	NA	NA	False	NA	NA	NA	144755033	144793782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_144755131_144756511_144756623_144757057_144757205_144758582_144758797_144759500_144759627_144761266_144761414_144762028_144762232_144762683_144762806_144763329_144763544_144765276_144765457_144767715_144767863_144769257_144769378_144769715_144770004_144770106_144770245_144770966_144771080_144772797_144772934_144773941_144774134_144776210_144776440_144777147_144777414_144777782_144777884_144779346_144779549_144780013_144780179_144781008_144781100_144782224_144782425_144783177_144783440_144786669_144786896_144787929_144788148_144790249_144790435_144790857_144790936_144793696
99684	chr4	+	2350	5	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242735	-32	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.1878165690279	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAACTCCAATAAAGCTGA	NA	False	NA	NA	False	NA	NA	NA	147394998	147669623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147661479_147661561_147665698_147665826_147667290_147668172_147668510
99686	chr5	-	453	1	Antisense	novelGene_ENSMUSG00000096617.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	30	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACCTTGCCCACAGCCTT	NA	False	NA	NA	False	NA	NA	NA	96010681	96010228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96010200_96010700
99687	chr11	-	1050	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	173	multi-exon	FALSE	non_canonical	0	0	junction_1	0	41	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285408_20285605
99688	chr14	+	3968	23	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-7	-9	intron_retention	FALSE	canonical	0	0	junction_18	118.544199658723	2	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAAAGCCCTGCTGGCCT	NA	False	NA	NA	False	NA	NA	NA	32043968	32070099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066570_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068811_32069462
99689	chr9	-	1149	8	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATATCTGGTCGAATGGG	NA	False	NA	NA	False	NA	NA	NA	64085783	64082212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64082576_64082863_64083007_64083375_64083498_64084220_64084350_64084597_64084743_64085133_64085300_64085504
99690	chr4	+	3891	3	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-852	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	403	1	61	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCCATCCACTACGGC	NA	False	NA	NA	False	NA	NA	NA	146500227	146553897	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500532_146548860_146548988_146550437
99691	chr4	+	3777	7	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	31	0	intron_retention	FALSE	canonical	2	11	junction_1	34.6766812457914	33	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311803	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145311905_145311995_145312083_145314001_145314095_145319501_145319572_145343640_145343746_145347127_145347255_145348721
99692	chr12	+	1631	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-590	251	-10	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	2521	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAATAACTCCATGTTC	NA	False	NA	NA	False	NA	NA	NA	72132881	72148225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
99694	chr5	+	4243	18	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	50	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCCTGTCGGGTCGCGGTTT	NA	False	NA	NA	False	NA	NA	NA	31314756	31337270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315108_31315478_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323358_31323702_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327621_31330127_31330408_31331111_31331436_31331577_31331839_31337226
99695	chr16	-	564	1	Intergenic	novelGene_3801	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	38	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99696	chr8	-	1102	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-73	-75	-73	75	mono-exon	FALSE	NA	NA	NA	NA	NA	20	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592503	103591401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592500
99697	chr11	+	1260	2	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-152	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	7	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGGTGTCACTTGTGA	NA	False	NA	NA	False	NA	NA	NA	62442349	62444036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442476_62442902
99698	chr2	+	2895	14	NNC	ENSMUSG00000036617.18	novel	407	3	NA	NA	1945	-272	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	83.206096158093	1	71	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGACAAGCCGGATGCCAG	4826	False	NA	NA	False	NA	NA	NA	20729380	20812729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_20729565_20748269_20749103_20764357_20764463_20765025_20765076_20771255_20771423_20782836_20783013_20785752_20785884_20786608_20786757_20789854_20790312_20793238_20793423_20802687_20802843_20803426_20803595_20806352_20806473_20812712
99700	chr1	+	8075	41	Antisense	novelGene_ENSMUSG00000104503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1076	52	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTCCCTCAGCCTCGAC	NA	False	NA	NA	False	NA	NA	NA	84700477	84816213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84702535_84703115_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708416_84709341_84709501_84709735_84709847_84714700_84714802_84716398_84716559_84717237_84717380_84719909_84720060_84720814_84720939_84721534_84721740_84722397_84722472_84722732_84722894_84724900_84725056_84726886_84727069_84728075_84728222_84729263_84729435_84729600_84729702_84731991_84732198_84735135_84735257_84735442_84735670_84736692_84736848_84738482_84738647_84738735_84738852_84739585_84739751_84739839_84739908_84741047_84741210_84741558_84741653_84743700_84743797_84743879_84743916_84746303_84746451_84754035_84754134_84755144_84755229_84760547_84760687_84763813_84763916_84771243_84772049_84792543_84792687_84816107
99701	chr9	+	4813	2	ISM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	69	6316	69	-2922	intron_retention	FALSE	canonical	3	2717	junction_1	0	48	53	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTTAACATAACAAGTTACA	NA	False	NA	NA	False	NA	NA	NA	78099297	78110315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_78099347_78105551
99702	chr2	-	2926	12	NNC	ENSMUSG00000039536.17	novel	3569	12	NA	NA	14	-14	intron_retention	FALSE	non_canonical	0	0	junction_2	80.5867942342831	1	163	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACAGCTACTAAGAAA	NA	False	NA	NA	False	NA	NA	NA	166838171	166790080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_166791280_166791663_166791750_166792154_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
99703	chr11	-	2263	16	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	226.020844663102	1	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	NA	False	NA	NA	NA	70860785	70833902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834808_70835320_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
99704	chr12	+	1820	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	42	331	42	-331	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	2	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTCGAGACAGAGTTTC	NA	False	NA	NA	False	NA	NA	NA	24758281	24763814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
99705	chr11	+	1065	1	NIC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	463	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	9	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGCATATATGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	62442964	62444029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62443000_62444000
99706	chr15	+	2203	1	Intergenic	novelGene_3245	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	39	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAACGCCCCGAGGGGTTT	NA	False	NA	NA	False	NA	NA	NA	22700902	22703105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22700900_22703100
99707	chr19	-	5100	12	Fusion	ENSMUSG00000117839.2_ENSMUSG00000024824.8	novel	2101	10	NA	NA	-3	-32	intron_retention	FALSE	non_canonical	0	0	junction_1	208.410910074345	24	69	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTCCTTCCGCCCTCCC	5995	False	NA	NA	False	NA	NA	NA	4251638	4242139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr19_-_4242269_4242739_4242871_4243018_4243252_4243765_4244687_4244767_4244899_4244973_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4251057_4251327_4251399_4251481
99708	chr5	+	3921	15	NIC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	-6	32	intron_retention	FALSE	canonical	3	18	junction_13	809.519399497792	2	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTGTGACTAGACTTCA	NA	False	NA	NA	False	NA	NA	NA	108213616	108255368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108217027_108217230_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108241273_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
99709	chr8	+	2952	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-18	326	multi-exon	FALSE	canonical	0	0	junction_5	553.985703786659	1	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACCGTGTGGGCATTCAA	NA	False	NA	NA	False	NA	NA	NA	19834743	20046214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811_20043367_20045732
99710	chr9	+	2336	8	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	-6	intron_retention	FALSE	non_canonical	0	0	junction_7	7395.6866717661	48	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATACAGTTGTCCTG	2456	False	NA	NA	False	NA	NA	NA	40712568	40716489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715756
99711	chr11	-	1077	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	-26	0	-26	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	7	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427128	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
99712	chr4	+	3287	7	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-32	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	187.738884861099	14	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	145397222	145431014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474_145428318_145428486_145428795_145429379
99713	chr17	-	912	2	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	737	-18	intron_retention	FALSE	canonical	3	10930	junction_1	0	46	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	-112	True	NA	NA	NA	45879925	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45879489_45879783
99714	chr4	-	976	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	98	-72	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	18	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACAACTTTGTCAAGCTC	NA	False	NA	NA	False	NA	NA	NA	91740978	91740002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91740000_91741000
99715	chr4	+	4670	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-12996	2901	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	27.5	6	89	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACTATGTAAATGTGACT	NA	False	NA	NA	False	NA	NA	NA	145160313	145180359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145160385_145173065_145173342_145176036
99716	chr7	-	555	1	FSM	ENSMUSG00000081895.4	ENSMUST00000119383.2	555	1	44	-44	44	44	mono-exon	FALSE	NA	NA	NA	NA	NA	201	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTTTTGTGTTTAGCTA	7732	False	NA	NA	False	NA	NA	NA	72299015	72298460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_72298500_72299000
99717	chr17	+	1663	11	ISM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	1441	510	1348	1	3prime_fragment	FALSE	canonical	3	3235	junction_7	188.129636155498	3	26	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCTGGGTTCCTGTCCTC	NA	False	NA	NA	False	NA	NA	NA	13136709	13143444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
99718	chr6	-	1177	7	ISM	ENSMUSG00000040669.15	ENSMUST00000161054.8	3612	14	5	5823	5	1882	5prime_fragment	FALSE	canonical	3	372	junction_2	234.506870309213	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCCACACACCTCCAG	9094	False	NA	NA	False	NA	NA	NA	122316599	122300631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
99720	chr8	-	1006	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-73	21	-73	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCGGTCTCTTCGACTA	NA	False	NA	NA	False	NA	NA	NA	103592503	103591497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591500_103592500
99721	chr16	-	7750	4	Antisense	novelGene_ENSMUSG00000116928.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	58	57	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAGGAATGATAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	47202499	46995944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_46999198_47127488_47129411_47138764_47139158_47200317
99722	chr6	-	6587	12	NIC	ENSMUSG00000040669.15	novel	3893	15	NA	NA	4	-4	intron_retention	FALSE	canonical	3	590	junction_7	196.191212177144	13	48	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTCCATTGTCTTAC	9082	False	NA	NA	False	NA	NA	NA	122316611	122294700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122299432_122299966_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
99723	chrM	+	285	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	1093	0	1093	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-3	True	NA	215	True	NA	NA	NA	11259	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11300_11500
99724	chr4	+	2553	7	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-242723	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.6404776212465	4	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395010	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147534439_147534577_147578832_147578926_147637751_147637860_147665698_147665826_147667290_147667431_147667838
99725	chr17	+	4192	5	Antisense	novelGene_ENSMUSG00000058626.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	88	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCCAGCCTGGTCTACAG	NA	False	NA	NA	False	NA	NA	NA	45955787	45960846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45956022_45956100_45956729_45956826_45956947_45957420_45958753_45958968
99726	chr4	+	1884	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_1	40.4	11	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576871	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577080_147578832_147578845_147665698_147665826_147667290_147667431_147668090_147668409_147668576
99727	chr14	+	5011	22	NIC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	58	-6	intron_retention	FALSE	canonical	3	463	junction_11	41.2709645756772	9	76	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGCCCTGCTGGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	32044033	32070102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32068811_32069462
99728	chr8	-	3999	22	Antisense	novelGene_ENSMUSG00000031592.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	109	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGGGAGAAGAGTGGGGGG	NA	False	NA	NA	False	NA	NA	NA	41746800	41692790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_41692998_41709029_41709147_41710941_41711072_41712071_41712342_41714045_41714216_41720219_41720399_41723474_41723583_41725275_41725498_41727136_41727336_41728031_41728214_41728697_41728843_41728960_41729187_41732784_41732929_41733056_41733187_41735614_41735756_41736590_41736783_41738999_41739198_41740713_41740937_41741043_41741190_41741665_41741857_41743755_41743929_41746494
99729	chr8	+	1100	4	Antisense	novelGene_ENSMUSG00000031633.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	27	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCGATGCCACCTGCCAGG	NA	False	NA	NA	False	NA	NA	NA	46660239	46663904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_46660660_46661439_46661578_46662059_46662543_46663845
99730	chr9	+	1321	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1460	147	1442	-147	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	3	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082116	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
99731	chr4	+	3103	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-11	0	multi-exon	FALSE	non_canonical	0	0	junction_1	72.8406479927245	2	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	4099	False	NA	NA	False	NA	NA	NA	147314729	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147393100_147393194_147394997_147395147_147409230_147409335_147413438_147413566_147415724
99732	chr4	-	4709	7	Intergenic	novelGene_2109	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	259.307839363864	13	95	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGTCGATCGCTCTCCC	145	False	NA	NA	False	NA	NA	NA	146805998	146795992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146797382_146800388_146800517_146802049_146802597_146802680_146803219_146803386_146803760_146803929_146804394_146804728
99733	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
99734	chr16	-	498	1	Intergenic	novelGene_3831	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTGGAATGCGAGTGCCTA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99735	chr16	+	2609	21	FSM	ENSMUSG00000022763.19	ENSMUST00000023448.15	2688	21	76	3	76	1	multi-exon	FALSE	canonical	1	3	junction_11	2.45916652547159	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTGTGTCCTAGTGTAAT	4324	False	NA	NA	False	NA	NA	NA	17307602	17325346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_17307756_17309156_17309348_17309784_17309968_17317411_17317626_17317864_17317975_17318152_17318263_17318353_17318399_17318610_17318708_17318789_17318903_17319316_17319404_17319954_17320047_17320129_17320261_17320359_17320476_17320576_17320649_17320757_17320822_17321329_17321407_17321507_17321626_17322781_17322881_17323547_17323624_17324093_17324199_17324990
99736	chr12	+	8369	7	Intergenic	novelGene_4293	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	19	269	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACTACAGCCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	17172417	17298514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_17173301_17173413_17173541_17175890_17179156_17293658_17294594_17294641_17295109_17295704_17298315_17298432
99737	chr4	+	2207	9	Fusion	ENSMUSG00000087207.9_ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-54	-9	multi-exon	TRUE	non_canonical	0	0	junction_2	5.22015325445528	2	47	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147209658	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147316807_147316901_147395015_147395127_147533935_147533956_147536170_147536264_147586007_147586104_147599008_147599216_147668101_147668493_147668576
99739	chr17	+	884	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	121	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2073.64213101007	4	10	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATAGCTGAATTTTGTT	3157	False	NA	NA	False	NA	NA	NA	35817035	35821664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817268_35820304_35820436_35820877_35821037_35821184_35821277_35821394
99740	chr11	-	992	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	187	multi-exon	FALSE	non_canonical	0	0	junction_1	0	321	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGCC	4388	False	NA	NA	False	NA	NA	NA	20286086	20284824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285302_20285571
99741	chr4	-	2507	14	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	-20	79	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	345.087468544926	3	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCTTTTCTCTTGAAT	NA	False	NA	NA	False	NA	NA	NA	135080482	135048325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054448_135065323_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
99742	chr2	+	1118	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11385	209	multi-exon	FALSE	canonical	0	0	junction_1	0	16	31	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCAACCCCCCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	11413649	11426240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414319_11425646_11426004_11426148
99743	chr17	-	2383	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-18	intron_retention	FALSE	non_canonical	0	0	junction_2	3150.19722588657	8	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884199	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879220_45879340_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99744	chr16	-	564	1	Intergenic	novelGene_3802	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99745	chr1	-	2054	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	42	744	-9	0	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGTGCTTTCTTTTGGC	NA	False	NA	NA	False	NA	NA	NA	75195896	75191615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
99747	chrX	-	8126	26	NNC	ENSMUSG00000031386.15	novel	8138	26	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	137.476479442849	64	110	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTGGTATTTACCCGTG	NA	False	NA	NA	False	NA	NA	NA	73009944	72986400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72988084_72988251_72988316_72988734_72989040_72989729_72989916_72990315_72990454_72990540_72990657_72990796_72991121_72991447_72991893_72992507_72992672_72992803_72994308_72994848_72995070_72995259_72995399_72995531_72995675_72995778_72995999_72996167_72996273_72996431_72996657_72996930_72997129_72998185_72998349_72998619_72998980_72999060_72999241_73000172_73000280_73000988_73001078_73001857_73002067_73002728_73002890_73003189_73003339_73009416
99748	chr5	+	363	1	Intergenic	novelGene_959	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	713	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTTCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197806	146198169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
99749	chr11	-	5199	2	Intergenic	novelGene_2336	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	163	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACAAGACCGTTTTCTCG	NA	False	NA	NA	False	NA	NA	NA	57450923	57445639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450652_57450736
99750	chr17	+	1889	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	61	-2	intron_retention	FALSE	canonical	0	0	junction_5	1078.48673612613	3	12	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCACCTGGGTTCCTGTC	NA	False	NA	NA	False	NA	NA	NA	13135422	13143441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139675_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
99751	chrM	+	468	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	150	-46	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATCTCAGGAATTATCGA	-2	True	NA	27	True	NA	NA	NA	14294	15242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14700_15179
99752	chr3	+	10261	2	Antisense	novelGene_ENSMUSG00000040969.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	35	104	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCCACTCAGCTCTTACA	649	False	NA	NA	False	NA	NA	NA	132829423	133007033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_132836138_133003486
99753	chr5	+	2390	10	NNC	ENSMUSG00000013495.16	novel	3956	11	NA	NA	22	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	53.2853951222409	2	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGAATTTCTTTTGAACA	NA	False	NA	NA	False	NA	NA	NA	108777719	108795122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793670
99754	chr1	+	3619	10	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-44	-246	intron_retention	FALSE	canonical	3	19	junction_4	213.803013063572	4	83	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177760	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167184804_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
99756	chr5	-	5195	2	Intergenic	novelGene_737	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	46	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	88315669	88310432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_88314855_88314896
99757	chr17	+	1940	8	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	53	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	642.230424666526	23	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGGTGGCGCACGTCTTT	552	False	NA	NA	False	NA	NA	NA	56610452	56630484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620155_56629656
99758	chr17	+	8272	3	FSM	ENSMUSG00000024019.19	ENSMUST00000234716.2	3600	3	-4674	2	-286	-2	multi-exon	FALSE	canonical	3	460	junction_2	8	27	116	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCATGTGGCTCTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	29913097	29922330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29920058_29920458_29920568_29921127
99759	chr7	-	1374	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-13	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6644.36332540598	9	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398355	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394629_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
99760	chr11	+	1818	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	2	-73	-2	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCTTGTTGTTTTTGT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
99761	chr3	-	269	1	Intergenic	novelGene_3062	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTATGATTCTTAAACA	NA	False	NA	NA	False	NA	NA	NA	5925667	5925398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_5925400_5925700
99762	chr18	+	3924	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26796	1854	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	472.010781142542	3	115	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTAGACTTTCACTCCAC	6289	False	NA	NA	False	NA	NA	NA	77126107	77236487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220790_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
99763	chr4	+	4701	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-16979	252919	multi-exon	TRUE	non_canonical	0	0	junction_1	189.281671115848	81	142	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACTTCCAGGTTCATGGA	NA	False	NA	NA	False	NA	NA	NA	147297761	147671110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147297769_147314749_147314893_147316807_147316901_147337753_147337859_147409230_147409335_147413438_147413566_147415724_147419795_147671058
99764	chr3	-	2486	13	Antisense	novelGene_ENSMUSG00000028101.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCCGCCTGCTCCGCCCC	NA	False	NA	NA	False	NA	NA	NA	96612790	96604403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_96604510_96606733_96607392_96607530_96607582_96607801_96607895_96608600_96608736_96608930_96609038_96609489_96609563_96609671_96609833_96610840_96610974_96611052_96611222_96611372_96611506_96611661_96611700_96612161
99765	chr4	-	3063	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	-67	4481	-67	0	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	11	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTTTGTTTTGCAGCC	NA	False	NA	NA	False	NA	NA	NA	148711543	148701319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
99766	chr8	-	4537	18	Genic_Genomic	ENSMUSG00002075691.1	novel	77	1	NA	NA	-13152	8062	multi-exon	FALSE	non_canonical	0	0	junction_1	0.941176470588235	3	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCTCACCATCCAATCAG	NA	False	NA	NA	False	NA	NA	NA	111781808	111760517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_111760540_111763539_111763704_111766761_111766951_111767226_111767374_111768108_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111775366_111777689_111778002_111778906_111779152_111779820_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
99767	chr3	+	4263	10	ISM	ENSMUSG00000038861.15	ENSMUST00000072287.12	3692	11	209	224	64	-162	intron_retention	FALSE	canonical	3	26	junction_8	4.84831649539365	6	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTGTCTTGTTGCTTC	NA	False	NA	NA	False	NA	NA	NA	94882250	94913930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_94882397_94891293_94892231_94900276_94900505_94901471_94901700_94903145_94903256_94903890_94903996_94904162_94904287_94906158_94906425_94911550_94911684_94911944
99769	chr10	-	1971	9	Antisense	novelGene_ENSMUSG00000040054.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	81	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGAGGCAGCTGGTGC	NA	False	NA	NA	False	NA	NA	NA	127952575	127944826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_127944901_127946618_127947216_127948448_127948635_127949326_127949549_127950200_127950668_127950902_127950955_127951928_127952037_127952172_127952280_127952417
99770	chr10	+	998	7	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2504.20549054763	2	23	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015209_81018235
99771	chr11	-	1345	3	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	34	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1584	3	46	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGATTGTGTGGTCTGTG	NA	False	NA	NA	False	NA	NA	NA	120472416	120468935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120470151_120471158_120471220_120472347
99772	chr15	+	802	2	Genic_Genomic	ENSMUSG00000078300.4	novel	1002	1	NA	NA	-74	166	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTCGCTGCACCCAAAAAA	88	False	NA	NA	False	NA	NA	NA	12574900	12576142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_12575415_12575854
99773	chr4	+	3051	7	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	-51	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	38.970073988468	2	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	147637682	147669653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147639766_147639861_147641585_147641685_147646898_147646979_147661481_147661587_147665716_147665826_147667290
99774	chr14	-	5081	22	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-183	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	74.309886177234	92	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655420	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54650184_54650242_54651024_54651105_54651336_54651471_54654045_54654228_54655357
99775	chr3	-	1049	1	Antisense	novelGene_ENSMUSG00000069014.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTGTGCCCCATTTCTC	NA	False	NA	NA	False	NA	NA	NA	54390054	54389005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_54389000_54390100
99777	chr11	+	1338	8	NNC	ENSMUSG00000020372.16	novel	1447	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2547.14657479097	702	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	NA	False	NA	NA	NA	48691186	48696915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_48691400_48692489_48692662_48693099_48693426_48694171_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
99778	chr5	+	3855	23	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	67	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCGCAGCCCCGCCTGC	NA	False	NA	NA	False	NA	NA	NA	100511687	100564079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100511807_100513589_100513854_100516152_100516208_100521274_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533987_100534060_100536389_100536966_100538617_100538687_100540247_100540490_100540725_100540875_100541061_100541221_100543657_100543760_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555139_100563961
99779	chr17	-	2344	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-4	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	46377	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45884185	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879179_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99780	chr2	+	3409	12	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	-280	intron_retention	FALSE	canonical	3	8	junction_5	452.498335689373	1	69	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTCGTCACTTTTTCCAG	651	False	NA	NA	False	NA	NA	NA	26279357	26286854	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281761_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
99781	chr17	+	3550	2	Intergenic	novelGene_272	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	108	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAATTTGTCTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	57892024	57896041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_57892738_57893204
99782	chr17	+	4226	21	NNC	ENSMUSG00000024073.17	novel	15768	73	NA	NA	-2327	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	13.2320633311665	3	93	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTATGTCTTGTTTCTAAA	6947	False	NA	NA	False	NA	NA	NA	74957299	75010346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_74957399_74958902_74959047_74959611_74959742_74961383_74961516_74962166_74962335_74965172_74965347_74966153_74966351_74967376_74967678_74969595_74969814_74975753_74975919_74977208_74977378_74984160_74984375_74996212_74996357_74997352_74997464_74997996_74998215_74999178_74999341_75000442_75000521_75003231_75003421_75004379_75004515_75009198_75009499_75009568
99783	chr4	+	1649	11	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	0	-46	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	5383.18773218992	3	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCCCAGTGGTTTACAT	NA	False	NA	NA	False	NA	NA	NA	150321696	150333284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332418_150332942
99784	chr17	-	2496	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	4228.75912768746	5	57	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCTGCTCTCCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880175_45880306_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99785	chr11	+	1551	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	0	-38	multi-exon	FALSE	canonical	2	40	junction_1	0	1	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTCTGGACAGTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120653619	120655207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_120653817_120653853
99786	chr4	+	3308	5	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	2525	178553	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.5884572681199	2	30	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	146209466	146393557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146209546_146312913_146312972_146316363_146316491_146317966_146318727_146391273
99788	chr7	-	793	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	87	1028	0	-31	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	1	43	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAAATAAAGACATTTA	8422	False	NA	NA	False	NA	NA	NA	99132858	99128130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
99789	chr15	+	5003	1	FSM	ENSMUSG00000097493.4	ENSMUST00000192865.2	2657	1	-3729	1383	-3047	287	mono-exon	FALSE	NA	NA	NA	NA	NA	74	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTCCGACAGCTTCCGC	NA	False	NA	NA	False	NA	NA	NA	60691072	60696075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_60691100_60696100
99790	chr12	-	1432	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	2	-17	-2	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	7	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
99791	chr17	+	989	6	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	40	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCCGAACGCCCCCGAC	NA	False	NA	NA	False	NA	NA	NA	45878722	45884192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879200_45881941_45882103_45882337_45882548_45882692_45882838_45884092
99792	chr5	+	2107	10	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_1	1045.0028294604	1587	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	298	False	NA	NA	False	NA	NA	NA	77099165	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099253_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
99794	chr12	-	1679	6	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-2	intron_retention	FALSE	canonical	3	7551	junction_4	349.982056682911	27	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111638014_111638199_111638408_111638663
99795	chr13	+	811	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-17	-25	multi-exon	FALSE	non_canonical	0	0	junction_1	0	71	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAACAAAAAAA	7945	False	NA	NA	False	NA	NA	NA	74554510	74555440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554976_74555094
99796	chr4	+	4697	6	Intergenic	novelGene_2088	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	48.4	1	60	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146384371	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146384431_146386964_146387175_146388486_146388614_146390758_146391581_146742657_146742791_146802658
99798	SIRV5	+	4419	18	NIC	SIRV5A	novel	1890	17	NA	NA	0	0	intron_retention	FALSE	canonical	3	1532	junction_17	3291.73351643972	59	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1000	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
99799	chr3	-	3413	25	NNC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	398	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	282.72156687278	1	55	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	8121	False	NA	NA	False	NA	NA	NA	89955208	89913526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915661_89916412_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076
99800	chr17	-	684	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	42	8	-13	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	165	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	NA	False	NA	NA	NA	74623416	74606476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
99801	chr13	-	2502	4	Genic_Genomic	ENSMUSG00000114434.2	novel	1508	1	NA	NA	-12514	-497	multi-exon	FALSE	canonical	0	0	junction_2	9.42809041582063	4	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGAGAGAAACCGTGTGA	NA	False	NA	NA	False	NA	NA	NA	66711798	66698273	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_66700522_66700722_66700807_66704544_66704587_66711670
99802	chr5	-	4223	3	NIC	ENSMUSG00000029512.12	novel	5213	28	NA	NA	98	-1	intron_retention	FALSE	canonical	3	1073	junction_1	35.5	3	39	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGGTGTCAATTTCATC	NA	False	NA	NA	False	NA	NA	NA	110936821	110932354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_110935559_110935638_110935812_110935975
99803	chr9	+	5026	8	Intergenic	novelGene_1078	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	121	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAGATCTGAGCCAGAA	NA	False	NA	NA	False	NA	NA	NA	58125857	58157005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129152_58136640_58136693_58137110_58137369_58137772_58137914_58140437_58142217_58154257_58154725_58156825
99804	chr4	+	2925	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	40.1690870640043	3	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206906	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146291416_146291514_146368119_146368239_146384314_146384431_146388486_146388614_146390758_146390904_146391317_146392407_146392742_146393443_146552623
99805	chr17	-	2294	13	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	-32	intron_retention	FALSE	non_canonical	0	0	junction_2	3999.89702905657	2	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTATGCAAAATAAAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	45884195	45878732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879220_45879364_45879489_45879783_45879838_45879884_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99806	chr7	-	5567	1	Intergenic	novelGene_2938	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	66	62	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTGCCTTGGTCGTGGTG	NA	False	NA	62	True	NA	NA	NA	42466176	42460609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_42460600_42466200
99807	chr19	-	3337	2	Antisense	novelGene_ENSMUSG00000055491.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	59	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGGAAAGGAACTACATCT	NA	False	NA	NA	False	NA	NA	NA	46052966	46044970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_46045181_46049839
99808	chr11	+	3910	1	NIC	ENSMUSG00000059552.14	novel	1867	11	NA	NA	1	-5509	mono-exon	FALSE	NA	NA	NA	NA	NA	22	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTATTTTTTCTTAGAAC	NA	False	NA	NA	False	NA	NA	NA	69471228	69475138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69471200_69475100
99809	chr12	-	1758	3	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	48	-2	intron_retention	FALSE	canonical	3	7554	junction_2	3	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111637871	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636449_111636595_111637479_111637648
99810	chr12	-	2739	3	Antisense	novelGene_ENSMUSG00000113959.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTTGGGGAAACATCA	NA	False	NA	NA	False	NA	NA	NA	19354239	19349968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_19351009_19351211_19351274_19352602
99811	chr5	-	1339	6	NIC	ENSMUSG00000029673.20	novel	4217	14	NA	NA	21	3526	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	12.280065146407	3	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCACGGGCCCTTTCGGGT	NA	False	NA	NA	False	NA	NA	NA	131566788	131494915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_131494966_131501096_131501318_131503760_131504015_131505390_131505863_131562659_131562712_131566498
99812	chrM	+	1022	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	122	0	-122	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGTAGAACACCCATTTA	-2	True	NA	87	True	NA	NA	NA	14144	15166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15200
99813	chr13	-	2867	23	NIC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	24	7	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	364.829941703852	2466	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTACTTGGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	6698789	6631210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6643136_6643290_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
99814	chr17	+	3878	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-7	-29	intron_retention	FALSE	non_canonical	0	0	junction_16	588.707665011889	4	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTGCAATAAAATAAAATTCT	492	False	NA	NA	False	NA	NA	NA	56610392	56630457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629731_56630217
99815	chr14	+	633	1	Intergenic	novelGene_514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAGATATTTTACAG	NA	False	NA	NA	False	NA	NA	NA	13669837	13670470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_13669800_13670500
99816	chr7	+	1072	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-14	174	-14	-174	mono-exon	FALSE	NA	NA	NA	NA	NA	14	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCACCCACCCCAGCA	NA	False	NA	NA	False	NA	NA	NA	51396380	51397452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397500
99817	chr7	-	2971	2	ISM	ENSMUSG00000030695.17	ENSMUST00000147748.2	895	4	-12	-368	-12	-75	intron_retention	FALSE	canonical	3	20251	junction_1	0	2	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTACAAGGCTCTGAGCG	NA	False	NA	NA	False	NA	NA	NA	126398354	126395285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126395928_126396025
99818	chr11	-	1265	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	42583	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	68	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGTATAAAAGAACTGTG	4388	False	NA	NA	False	NA	NA	NA	20286086	20242428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20242436_20284828
99819	chr3	-	1186	2	Antisense	novelGene_ENSMUSG00000096544.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTTATTCCAAACATTCG	NA	False	NA	NA	False	NA	NA	NA	124180316	124097034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_124097142_124179237
99820	chr5	+	1036	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	49	960	-21	-5	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	120	27	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGCTTTTTCTGTGTTA	NA	False	NA	NA	False	NA	NA	NA	108048416	108055911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
99821	chr5	+	1151	2	Genic_Genomic	ENSMUSG00000096617.4	novel	1002	1	NA	NA	-72	172	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCACCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96009500	96010746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_96010369_96010463
99822	chr4	+	3913	8	Intergenic	novelGene_2090	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	167.220006614773	1	90	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146426513	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426715_146428065_146428109_146797290_146797381_146800390_146800518_146802050_146802656_146802736_146803398_146803566_146804170_146804421
99823	chr4	+	3006	4	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159897	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	172.714279149763	280	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146426586	146623852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426763_146616526_146616611_146619877_146620005_146621233
99824	chr6	+	3674	9	NIC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	-6	43	intron_retention	FALSE	canonical	3	404	junction_1	60.0102855767243	6	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTAGTGTTGTTAAGTCA	NA	False	NA	NA	False	NA	NA	NA	72575604	72584468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72575780_72577955_72578139_72578458_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
99825	chr7	-	1916	2	Intergenic	novelGene_3028	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	37	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAACCTTCATCTGTCAG	NA	False	NA	NA	False	NA	NA	NA	121635418	121633396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_121634362_121634467
99826	chr11	+	1816	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	4	-73	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	2	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
99827	chr18	+	979	3	Intergenic	novelGene_4496	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	33.5	5	26	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCAACAAGACCGTTTT	NA	False	NA	NA	False	NA	NA	NA	9592760	9597942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_9592989_9597102_9597232_9597320
99828	chr5	+	2615	17	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	40	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGAGCTGGAGCGTGGCT	NA	False	NA	NA	False	NA	NA	NA	31315703	31337437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323358_31323702_31323733_31325041_31325148_31325329_31325448_31325597_31325820_31326392_31326496_31327181_31327262_31327525_31327619_31330125_31330401_31331107_31331436_31331577_31331839_31337226
99829	chr5	+	3293	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	380	-292	intron_retention	FALSE	non_canonical	0	0	junction_1	1568.85301637287	7	119	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTTGTTCCGTAAGTGTT	NA	False	NA	NA	False	NA	NA	NA	129864441	129874920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864462_129864595_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869104_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
99830	chr16	+	2958	9	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_1	680.90303090822	4	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATATTCACTTTAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926658_22927334_22927384_22927468_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
99831	chr1	+	4896	18	ISM	ENSMUSG00000041757.18	ENSMUST00000186917.7	4820	22	7588	-481	-2859	80	3prime_fragment	FALSE	canonical	2	3	junction_5	7.23122793441379	22	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCTCCTGCCCCAACC	NA	False	NA	NA	False	NA	NA	NA	133194334	133229435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_133194405_133197737_133197941_133199946_133200430_133201595_133202113_133208076_133208146_133209520_133209602_133209854_133210005_133211008_133211105_133212617_133212730_133212984_133213125_133215207_133215338_133215511_133215619_133220089_133220267_133221443_133221612_133221691_133221826_133222300_133222447_133226657_133226782_133227446
99832	chr12	+	1555	4	NNC	ENSMUSG00000116883.2	novel	1546	5	NA	NA	10749	-1493	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	14.0791413879619	1	17	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCTAGCTGCATATGTA	NA	False	NA	NA	False	NA	NA	NA	20676092	20686456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_20676155_20683109_20683237_20683438_20683500_20685151
99834	chr2	+	4771	7	Fusion	ENSMUSG00000078896.12_ENSMUSG00000078887.11	novel	1665	4	NA	NA	-28	2778	multi-exon	FALSE	canonical	0	0	junction_3	81.660714068775	15	57	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCCCAACTTGCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	175311827	175675819	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_175311916_175319791_175319919_175320124_175320186_175664841_175664897_175670021_175670149_175670349_175670411_175671567
99835	chr1	+	2716	11	NNC	ENSMUSG00000051223.15	novel	3876	12	NA	NA	4	-807	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	716.961400634651	1	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTAGGTTTTATAGATC	895	False	NA	NA	False	NA	NA	NA	58432294	58445705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432376_58433360_58433435_58436834_58436993_58439233_58439295_58439861_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
99836	chr4	+	3220	6	Intergenic	novelGene_2038	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_5	229.966432333069	2	33	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCTTTGGTTGTTTCCA	2288	False	NA	NA	False	NA	NA	NA	146289346	146393560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146384326_146384431_146388486_146388614_146390758_146392370_146392454
99837	chr9	+	3905	1	Antisense	novelGene_ENSMUSG00000032407.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGGAGGCAGCAGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	95390030	95393935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_95390000_95393900
99838	chr11	+	679	4	NIC	ENSMUSG00000060938.15	novel	526	4	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	269	junction_1	7467.32754515741	450	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	68792443	68795360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_68792639_68793095_68793269_68794004_68794146_68795190
99840	chr9	+	937	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	99	902	-1	-92	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	11	18	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAGCCACCACTGAGTG	NA	False	NA	NA	False	NA	NA	NA	119956853	119960533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
99841	chr4	+	2060	5	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	13	1628	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	43.4014688691523	2	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTGGTAACACTCTGTATA	NA	False	NA	NA	False	NA	NA	NA	145136848	145177954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145160315_145160385_145176036_145176945_145177113
99842	chr6	-	2743	1	Antisense	novelGene_ENSMUSG00000007458.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	14	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCACCATGTGTACCTGTG	551	False	NA	NA	False	NA	NA	NA	122293930	122291187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122291200_122293900
99846	chr9	-	1214	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTGGTCGAATGGGAGC	NA	False	NA	NA	False	NA	NA	NA	64085792	64082209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64082581_64082863_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085006_64085086_64085177_64085297_64085502
99848	chr8	-	5873	1	Intergenic	novelGene_1593	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCTTGGGTGTGAACTC	NA	False	NA	NA	False	NA	NA	NA	21084293	21078420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_21078400_21084300
99849	chr6	-	2213	19	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	2	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	340.87499971705	1	60	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGTCATTAAATAAAGCA	3050	False	NA	NA	False	NA	NA	NA	71885732	71857665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71870365_71870511_71871270_71871309_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884760_71884831_71885617
99850	chr17	-	898	2	NIC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	767	-2	intron_retention	FALSE	canonical	3	10930	junction_1	0	56	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTCCTGCTCTCCTTGTA	NA	False	NA	-82	True	NA	NA	NA	45879895	45878702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_45879489_45879783
99851	chrM	+	1557	2	Genic_Genomic	ENSMUSG00000064356.1_ENSMUSG00000064358.1	novel	784	1	NA	NA	6	-2	multi-exon	FALSE	canonical	0	0	junction_1	0	59	74	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTCCCTTAGTATAATTA	-5	True	NA	NA	False	NA	NA	NA	7771	9388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8578_8637
99852	chr3	+	1629	3	ISM	ENSMUSG00000025764.15	ENSMUST00000170711.8	2896	11	41012	-202	2189	202	3prime_fragment	FALSE	canonical	3	776	junction_1	7.5	2	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	3319	False	NA	NA	False	NA	NA	NA	41559053	41568695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_41559427_41564237_41564356_41567557
99853	chr4	+	4518	7	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	2	1360	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	76.3094940940437	501	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGAGAGGGTCTCATGTA	NA	False	NA	NA	False	NA	NA	NA	146033883	146064551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034023_146036302_146036397_146038203_146038353_146043550_146043631_146054375_146054480_146058453_146058581_146060726
99855	chr8	-	3561	22	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	8	14249	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.0372353972418	3	12	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGGAGGGACAGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	47070227	47014379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47014659_47014810_47014872_47015450_47015680_47021643_47021718_47023006_47023113_47025784_47025865_47026466_47026514_47026881_47026945_47029259_47029416_47031287_47032202_47034472_47034520_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070046
99856	chr4	+	2620	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	13	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	35.6791255498225	1	79	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216507	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147536170_147536264_147637752_147637884_147639766_147639810_147665698_147665826_147667290_147667443_147667939_147668493_147668576
99857	chr11	-	1252	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-177	-73	177	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
99858	chrX	+	4565	25	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	48	-729	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	179.431930570713	8	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAGGAGCCTAATCTAAA	NA	False	NA	NA	False	NA	NA	NA	150799471	150844961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150800288_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
99859	chr1	-	3082	3	Intergenic	novelGene_410	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	5	6	148	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	90555973	90550813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_90551227_90551287_90551662_90553678
99860	chr14	+	933	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-101	-147	-1	-41	mono-exon	FALSE	NA	NA	NA	NA	NA	4	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCATAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46321483	46322416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
99861	chr1	-	3634	3	NIC	ENSMUSG00000026281.16	novel	1003	5	NA	NA	10	-1324	intron_retention	FALSE	canonical	3	1366	junction_1	572.5	9	153	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGCACAGTCCACTTT	2320	False	NA	NA	False	NA	NA	NA	93729646	93721769	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_93722646_93726101_93728633_93729419
99862	chr4	+	3378	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-1772	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	186.09093673442	2	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGGCTGTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	146096706	146135326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146096839_146126781_146126867_146129876_146130004_146131535_146132060_146132143_146132766_146132934_146133205_146133288_146133492_146133911
99863	chrX	-	1126	9	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGCACCTCCAATGGCT	NA	False	NA	NA	False	NA	NA	NA	20548768	20544891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
99864	chr3	+	1992	14	NNC	ENSMUSG00000001016.13	novel	2027	14	NA	NA	-2	-5	intron_retention	FALSE	non_canonical	0	0	junction_13	369.075672553754	1	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACCAGTACAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	90383461	90395681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394405_90394533_90394625_90394765_90395137_90395228
99865	chr3	+	1520	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-24	-8	-24	8	mono-exon	FALSE	NA	NA	NA	NA	NA	5	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAATGTTCAACATG	5416	False	NA	NA	False	NA	NA	NA	54388834	54390354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54388800_54390400
99866	chr9	+	997	5	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	279	34	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCCAAGGCGACTGCCGC	NA	False	NA	NA	False	NA	NA	NA	78385743	78388954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386142_78387221_78387433_78387524_78387710_78387797_78387962_78388915
99867	chr1	-	1937	7	ISM	ENSMUSG00000026219.15	ENSMUST00000186894.7	3073	20	23	21403	7	6555	5prime_fragment	FALSE	canonical	3	439	junction_6	133.583515283719	3	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	7917	False	NA	NA	False	NA	NA	NA	84817002	84753526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84816949
99868	chr18	+	2307	19	NIC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	3	-3374	combination_of_known_splicesites	FALSE	canonical	1	6	junction_10	163.681790053328	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTGACCCCCAGCAGGT	8995	False	NA	NA	False	NA	NA	NA	32970308	32996079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977
99869	chr3	-	2994	1	Antisense	novelGene_ENSMUSG00000027896.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGACTGAGGATTTACT	5112	False	NA	NA	False	NA	NA	NA	107216618	107213624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_107213600_107216600
99870	chr3	+	2864	25	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	132.891866808653	1	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCAGTCGTGGTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	54600521	54636178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614407_54615589_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
99871	chr17	+	3400	8	NIC	ENSMUSG00000024101.16	novel	2905	11	NA	NA	9	-8	intron_retention	FALSE	canonical	3	38	junction_1	32.2262410504995	7	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCCAACTTGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	66418556	66427490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_66418645_66420857_66421012_66422665_66423096_66423254_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805
99872	chr19	+	2101	9	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	-135	-1926	intron_retention	FALSE	canonical	0	0	junction_4	404.376062595204	2	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGATCTGGGTATGAGA	1498	False	NA	NA	False	NA	NA	NA	8923628	8927741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8923749_8924011_8924501_8924615_8924805_8924888_8924964_8925095_8925150_8925388_8925487_8925620_8925761_8926314_8927028_8927518
99873	chr18	+	3168	7	Antisense	novelGene_ENSMUSG00002075705.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	3.77491721763537	7	108	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTCAGACTCCACCCTAT	NA	False	NA	NA	False	NA	NA	NA	3768698	3853825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_3768754_3778096_3778174_3805978_3806049_3827478_3827560_3828318_3828359_3828565_3828674_3851088
99874	chr7	-	1437	7	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAATCAGCTGGTCCTTGA	NA	False	NA	NA	False	NA	NA	NA	46505030	46497073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46497176_46498399_46498513_46499599_46499774_46500306_46500482_46501299_46501417_46503404_46503529_46504398
99875	chr11	-	2497	18	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	14	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTCTGGTTGGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	72342050	72335780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72335804_72336001_72336110_72336430_72336554_72336715_72336888_72336983_72337082_72337795_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
99876	chr11	+	2695	2	Intergenic	novelGene_2347	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57446172	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57446486_57448541
99877	chr4	+	4470	28	ISM	ENSMUSG00000037139.16	ENSMUST00000105854.2	5575	37	15871	23	15871	-23	3prime_fragment	FALSE	canonical	2	3	junction_8	2.88793906512858	24	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAATCTGTATTTTCATCA	6899	False	NA	NA	False	NA	NA	NA	135502896	135542852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_135503018_135503645_135503788_135505347_135505548_135506663_135506718_135507110_135507239_135510325_135510510_135513124_135513300_135514709_135514832_135515205_135515394_135515598_135515726_135516844_135517024_135522392_135522508_135523591_135523749_135524274_135524385_135524764_135524810_135525605_135525743_135528312_135528458_135528652_135528713_135529026_135529095_135530518_135530630_135533348_135533437_135534194_135534234_135534479_135534589_135536106_135536271_135538059_135538097_135538245_135538269_135539754_135539811_135541466
99878	chrX	-	7437	18	NNC	ENSMUSG00000031229.17	novel	10275	35	NA	NA	0	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	86.5491839688552	280	38	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGACCAAAATGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	104972183	104841231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864407_104918386_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104955075_104955261_104972093
99879	chr4	+	2557	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-296	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.962960031426	2	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAGCAAATAAAACTGTTG	924	False	NA	NA	False	NA	NA	NA	145237358	145265462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237383_145257381_145257486_145261385_145261513_145263160
99880	chr3	+	2715	9	NNC	ENSMUSG00000038393.15	novel	2827	8	NA	NA	36	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	165.336588509622	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTTCTTGTCTATGA	NA	False	NA	NA	False	NA	NA	NA	96465311	96469182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794_96468314_96468369
99881	chr9	+	2600	17	Antisense	novelGene_ENSMUSG00000032116.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	54	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCTTCTCATAGGACAAT	NA	False	NA	NA	False	NA	NA	NA	36643708	36676394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_36644257_36645608_36645727_36646648_36646838_36652784_36652887_36653008_36653126_36654710_36654889_36655283_36655445_36657846_36657940_36659218_36659375_36660847_36661030_36662477_36662645_36663626_36663732_36666100_36666192_36670016_36670162_36670496_36670617_36674624_36674702_36676343
99882	chr15	-	3366	1	Intergenic	novelGene_3218	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	74	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTTTCTCGTTGGTGATT	1827	False	NA	NA	False	NA	NA	NA	22703182	22699816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699800_22703200
99883	chr1	+	462	1	Antisense	novelGene_ENSMUSG00000101249.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTGATAGAACATAGTGG	NA	False	NA	NA	False	NA	NA	NA	24654719	24655181	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24654700_24655200
99884	chr16	+	2389	2	Intergenic	novelGene_3620	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACTGCATTCAAGAATA	NA	False	NA	NA	False	NA	NA	NA	22729606	22736119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_22731966_22736089
99885	chr2	+	3576	24	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	-4	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	186.596964662269	1	71	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGTGGTTTTTATTGTT	NA	False	NA	NA	False	NA	NA	NA	166747955	166788306	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764227_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
99886	chr15	-	1477	10	NIC	ENSMUSG00000022570.8	novel	1335	11	NA	NA	36	0	intron_retention	FALSE	canonical	3	182	junction_9	91.6272642588196	12	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8982	False	NA	NA	False	NA	NA	NA	75801539	75796524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_75796844_75797133_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
99887	chr5	+	3774	16	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	23	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAGCCTGGTGACCTGA	NA	False	NA	NA	False	NA	NA	NA	31314902	31331990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31317206_31317291_31317436_31323228_31323358_31323702_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31331436_31331577
99888	chr16	-	564	1	Intergenic	novelGene_3803	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99889	chr4	+	2493	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	37	-7	multi-exon	TRUE	non_canonical	0	0	junction_1	35.3426377173001	2	42	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAAGTTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147216531	147669648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147534439_147534585_147578832_147578927_147639766_147639852_147665698_147665826_147667290_147667379_147667896_147667935_147668018
99890	chr19	+	573	3	ISM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	2190	283	2110	167	intron_retention	FALSE	canonical	3	6173	junction_2	53.5	9	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCCTAGGCACCCAGTTTG	NA	False	NA	NA	False	NA	NA	NA	5542702	5543774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_5542833_5543182_5543260_5543408
99891	chr17	-	2789	20	NIC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-3	-6	intron_retention	FALSE	canonical	3	50	junction_12	99.6878507644121	1	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACTGTGGTTGTGGAGA	NA	False	NA	NA	False	NA	NA	NA	24746810	24727833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
99892	chr17	-	3594	10	Antisense	novelGene_ENSMUSG00000116953.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	31	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTCTGATTACTCACGCG	NA	False	NA	NA	False	NA	NA	NA	15212508	15199133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_15199160_15199760_15199930_15200517_15200658_15201835_15201940_15202561_15202651_15205078_15205178_15206035_15207092_15207854_15207979_15209141_15209228_15210807
99894	chr10	+	4055	1	FSM	ENSMUSG00000064441.3	ENSMUST00000082507.3	64	1	-2230	-1761	-2230	1761	mono-exon	FALSE	NA	NA	NA	NA	NA	7	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACAGTTGTGGTCTGTTTCC	2270	False	NA	NA	False	NA	NA	NA	81012553	81016608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81012600_81016600
99895	chr19	+	1136	9	Antisense	novelGene_ENSMUSG00000025006.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGATGCAGCTCTGGAGGG	NA	False	NA	NA	False	NA	NA	NA	40340967	40390732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_40341013_40351647_40351710_40353437_40353611_40361919_40362061_40365087_40365463_40370966_40371078_40381831_40381961_40386985_40387058_40390704
99896	chr4	-	2117	4	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	15730	63797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	18	39	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	146978254	146912355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913241_146913913_146914389_146976181_146976890_146978205
99897	chr6	-	3026	19	Antisense	novelGene_ENSMUSG00000034269.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTAATCCCTGGTACTGC	NA	False	NA	NA	False	NA	NA	NA	113120609	113083021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113083101_113086382_113086575_113086842_113086950_113087330_113087485_113087561_113087628_113087822_113087882_113088314_113088496_113091802_113092055_113092492_113092638_113092965_113093089_113093747_113093848_113094326_113094578_113095218_113095305_113096375_113096633_113097799_113098124_113098530_113098771_113105376_113105501_113114911_113115160_113120571
99898	chr10	-	5166	12	NNC	ENSMUSG00000062866.17	novel	2808	13	NA	NA	32324	2410	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	18.2679776730886	41	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCTGTGATATTCAGAGAA	NA	False	NA	NA	False	NA	NA	NA	13167709	13086728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_13090018_13100527_13100605_13108282_13108421_13109893_13109956_13115653_13115710_13121154_13121312_13122745_13122940_13129085_13129624_13133316_13133561_13137509_13137669_13142716_13142798_13167538
99899	chr7	+	2197	1	Intergenic	novelGene_2939	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	42	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGCCCAACTTCTGGCC	NA	False	NA	NA	False	NA	NA	NA	42647368	42649565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_42647400_42649600
99901	chr1	-	2069	13	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	711.606101052791	52	3	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	20890471	20873191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873429_20878978_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
99903	chr7	-	1396	9	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	193	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	6725.38012750023	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126397261	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396930_126397145
99904	chr4	+	2509	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	0	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	5	88	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216494	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147534439_147534569_147578832_147578926_147637751_147637807_147665698_147665826_147667290_147667440_147667846
99905	chr13	+	2164	7	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-39	982	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	95.8269563095664	1	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATAAAAGAACACATAATG	NA	False	NA	NA	False	NA	NA	NA	66261254	66271632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66264730_66264842_66267450_66267578_66267777_66267839_66269026_66269158_66269865_66270725_66270877
99906	chr13	+	2342	3	Antisense	novelGene_ENSMUSG00000114814.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	9	junction_1	100	1	100	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGTATAAAAAGAATTTTTA	NA	False	NA	NA	False	NA	NA	NA	66767756	66784979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66767871_66782550_66782678_66782878
99907	chr5	+	948	5	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	1288	221	1132	-221	3prime_fragment	FALSE	canonical	3	6763	junction_4	4510.81835008904	6	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAAACTCCGGTCTGG	NA	False	NA	NA	False	NA	NA	NA	115698813	115701565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
99909	chr4	+	2316	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000067919.9_ENSMUSG00000065999.14	novel	2813	7	NA	NA	14	-11	multi-exon	TRUE	non_canonical	0	0	junction_1	35.3426377173001	4	14	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCAACAAGTTTGCTTT	2297	False	NA	NA	False	NA	NA	NA	147106320	147669644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147106329_147216517_147216818_147534439_147534577_147578832_147578927_147639766_147639810_147665698_147665826_147667290_147667445_147668191
99910	chr14	+	2116	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	0	31	0	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	1	117	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	113552039	113554155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_113552000_113554200
99911	chr8	-	3586	25	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	40	23525	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	68.1226299281915	351	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGACTCCAAACTCGCGCC	NA	False	NA	NA	False	NA	NA	NA	47070177	47005103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47005162_47007048_47007097_47009114_47009229_47012901_47013005_47014810_47014872_47015450_47015662_47023050_47023113_47025784_47025865_47026466_47026514_47026881_47026945_47029259_47029416_47031287_47032202_47034472_47034520_47034602_47034770_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070046
99912	chr1	+	5840	12	NIC	ENSMUSG00000026020.10	novel	9507	15	NA	NA	3	0	intron_retention	FALSE	canonical	3	306	junction_2	471.45326578377	22	77	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	NA	NA	NA	59724146	59750669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653
99913	chr4	+	5322	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-3	2565	multi-exon	FALSE	non_canonical	0	0	junction_1	67.4166151627327	30	129	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGACCATGTAAGTGTAACT	4107	False	NA	NA	False	NA	NA	NA	147314737	147420756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314886_147323106_147323187_147337753_147337859_147413438_147413566_147415724_147416502_147416586_147417303_147417387
99914	chr10	+	2995	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_6	1963.35766017686	2	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015209_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
99916	chr18	-	2403	16	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	-836	-222	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1604.75662398453	1	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTCCTTTGTGAATGGT	2147	False	NA	NA	False	NA	NA	NA	35085462	35070688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35070847_35070949_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448
99917	chr5	+	1089	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	131	1157	-2	-1157	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	2	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGAATCATCCCTTGCT	473	False	NA	NA	False	NA	NA	NA	129097263	129100230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
99918	chr13	-	2635	14	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2751.08029561105	28	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTATGACGTGTGCCCA	5149	False	NA	NA	False	NA	NA	NA	58549932	58539054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58549877
99920	chr19	+	1534	1	NIC	ENSMUSG00000071644.11	novel	1864	10	NA	NA	3608	-934	mono-exon	FALSE	NA	NA	NA	NA	NA	1	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAGAGACTAGATAAGTC	1298	False	NA	NA	False	NA	NA	NA	8953375	8954909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8953400_8954900
99921	chr14	+	4297	19	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	0	48142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	274.0538887712	2567	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAAGTCCCAGGGGCAGC	NA	False	NA	NA	False	NA	NA	NA	54598297	54655272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774_54607344_54607549_54607734_54610396_54610546_54611297_54611398_54611672_54611775_54612004_54612128_54615221_54615367_54616451_54616582_54654049_54654230_54654839
99922	chr12	-	2240	5	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7551	junction_3	377.932864408482	231	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111637479_111637648_111638014_111638199_111638408_111638663
99923	chr15	+	3451	14	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	55	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	238.354889302565	3	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-39	True	NA	NA	NA	101982353	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997125_101998319_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
99924	chr19	+	3042	17	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	38	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	300.652201212215	1	97	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCAGCTCCTCCAGGCTC	3507	False	NA	NA	False	NA	NA	NA	8919276	8929653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923269_8923630_8923749_8924011_8924107_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
99925	chr14	+	1820	13	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	0	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	601.050532863548	1	55	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAAAAAATTAATCCTCAG	NA	False	NA	NA	False	NA	NA	NA	30271137	30295568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30290245_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
99926	chr7	+	1562	8	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	-511	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	62.7050107036666	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAACCATGCGAGTGC	NA	False	NA	NA	False	NA	NA	NA	110649688	110655571	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652686_110653020_110653134_110654565_110655164_110655282
99927	chr11	-	332	1	Intergenic	novelGene_2514	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCGGCGGCATCCGG	NA	False	NA	NA	False	NA	NA	NA	108902942	108902610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902600_108902900
99929	chrM	+	1380	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-7	5	-7	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	7	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGTGAATATAGTTTAC	62	False	NA	NA	False	NA	NA	NA	10159	11539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10200_11500
99930	chr2	-	748	1	FSM	ENSMUSG00000087701.5	ENSMUST00000120318.2	493	1	-46	-209	-46	209	mono-exon	FALSE	NA	NA	NA	NA	NA	202	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGAAGAAGAAGAAGAGCT	NA	False	NA	NA	False	NA	NA	NA	51761676	51760928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_51760900_51761700
99931	chr5	-	2920	12	Antisense	novelGene_ENSMUSG00000029283.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	72	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTTCCCGCGCTGCTTT	NA	False	NA	NA	False	NA	NA	NA	107132261	107112212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_107112292_107112796_107112979_107116721_107116806_107117022_107117161_107120611_107120705_107120789_107120934_107121642_107121890_107122467_107122563_107123350_107123525_107124493_107124577_107127141_107127310_107130828
99932	chr8	+	4780	2	NNC	ENSMUSG00000031770.17	novel	690	2	NA	NA	-1354	1	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	190	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGACTCCCATTGTCCT	2618	False	NA	NA	False	NA	NA	NA	95116063	95121987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_95116524_95117667
99933	chr10	+	1793	2	FSM	ENSMUSG00000044312.5	ENSMUST00000050103.2	1540	2	-30	-223	-30	223	multi-exon	FALSE	canonical	3	7	junction_1	0	15	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAGGTGACTCCATTGTG	9234	False	NA	NA	False	NA	NA	NA	61968838	61970765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_61969107_61969240
99934	chr8	-	9333	40	Antisense	novelGene_ENSMUSG00000056608.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	41	103	13	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGCGAGCAGGGGCGCC	NA	False	NA	NA	False	NA	NA	NA	91779028	91635214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_91635263_91658875_91660489_91683008_91683341_91699750_91699865_91700551_91700608_91703546_91703695_91704106_91704177_91704255_91704312_91705509_91705628_91710089_91710175_91710893_91711033_91712682_91712807_91716055_91716297_91721080_91721262_91723461_91723617_91723708_91723959_91725121_91725333_91728245_91728442_91732339_91732510_91733158_91733337_91735345_91735458_91737237_91737436_91737880_91738084_91741724_91741887_91742462_91742550_91748390_91748497_91749441_91749559_91750162_91750221_91752005_91752049_91753293_91753514_91757107_91757313_91759965_91760871_91761530_91761692_91762951_91763177_91764032_91764208_91767679_91767814_91768710_91768906_91769461_91769597_91775731_91775837_91777726
99937	chr15	+	2206	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	68	548	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	224.467626965573	1	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGAATTTACCTGAATAAA	NA	False	NA	-26	True	NA	NA	NA	101982366	102004182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992664_101992726_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
99938	chr6	-	1839	5	Antisense	novelGene_ENSMUSG00000012396.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.89711431702997	23	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGAGGCGTTCCCAGAAT	7472	False	NA	NA	False	NA	NA	NA	122691592	122684816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_122684890_122688497_122688759_122689580_122689666_122690091_122690255_122690335
99939	chr4	+	2402	9	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242719	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	41.6443273447897	1	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147395014	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395148_147534439_147534577_147639766_147639865_147651591_147651652_147661528_147661587_147665698_147665826_147667290_147667431_147667838_147668409_147668576
99940	chr1	+	1406	4	NIC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	4	-17	intron_retention	FALSE	canonical	3	20058	junction_2	1765.57494570151	2	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGGTGTCTCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	86454451	86458417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_86454673_86456894_86457275_86457452_86457527_86457686
99942	chr11	+	2880	10	NNC	ENSMUSG00000059248.14	novel	647	4	NA	NA	-554	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	202.451640316068	2	74	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	117221991	117253139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_117222077_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
99943	chrX	+	5168	1	Intergenic	novelGene_4018	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	167	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTTTTATTAGAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	116226559	116231727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_116226600_116231700
99944	chr11	-	1647	4	NNC	ENSMUSG00000016559.15	novel	1993	4	NA	NA	8	-330	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6290.62116699668	2	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915322	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914354_115914450_115914605_115914707_115914846_115915204
99946	chr17	-	2438	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	3150.19722588657	35	33	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCTGCTCTCCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45879820_45879895_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99947	chr4	+	2336	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	41.9404339510215	1	17	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206906	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146291416_146291514_146368119_146368209_146384369_146384431_146388486_146388614_146390758_146390897_146392150_146393429_146552609
99948	chr2	+	1277	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11385	215	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	41	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCCCCCCCACTTCTCT	NA	False	NA	NA	False	NA	NA	NA	11413649	11426246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
99949	chr16	-	564	1	Intergenic	novelGene_3804	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
99950	chr7	+	546	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	696	-10	696	10	mono-exon	FALSE	NA	NA	NA	NA	NA	10	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	51397090	51397636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51397100_51397600
99951	chr13	+	2537	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	102	1664	17	387	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	2	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTTTTGTAGTGCAGCA	NA	False	NA	NA	False	NA	NA	NA	3588164	3616207	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
99953	chr7	-	3206	16	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	-7	-70	combination_of_known_splicesites	FALSE	canonical	2	3	junction_13	21.2724130167585	2	56	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGCTCTAGCCACCAATG	3714	False	NA	NA	False	NA	NA	NA	98305778	98242775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98243018_98243958_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98297011_98297112_98303950_98304060_98305680
99954	chr4	+	2386	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	2800	4	NA	NA	-81591	182330	multi-exon	FALSE	non_canonical	0	0	junction_1	65.0864417368102	2	32	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	2781	False	NA	NA	False	NA	NA	NA	147233149	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147233338_147316807_147316901_147393099_147393144_147413432_147413566_147415724_147415863_147416528_147417258_147417341_147418018_147600136
99955	chr14	+	6238	10	Intergenic	novelGene_594	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	182	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGTAGCTGGACCTCCT	NA	False	NA	NA	False	NA	NA	NA	65055881	65134392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_65059153_65059202_65061147_65062713_65062822_65063051_65063145_65064220_65064319_65066036_65066120_65089335_65089481_65098960_65099076_65125022_65125109_65134097
99956	chr3	+	861	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	6351.56427090996	3	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCTTTAAACTTGCTTAAT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571405_137571787_137571902_137572146
99957	chr16	-	1529	6	ISM	ENSMUSG00000022858.17	ENSMUST00000023564.10	1369	8	2450	-585	-148	585	3prime_fragment	FALSE	canonical	3	1235	junction_5	349.562354952589	41	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTGTTGGTTTTCTTTTT	4568	False	NA	NA	False	NA	NA	NA	22071547	22064612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356
99958	chrX	-	3907	3	Antisense	novelGene_ENSMUSG00000079450.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	43.5	4	106	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTTTCGGTTTCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	122063886	122058972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_122059689_122060538_122061516_122061672
99959	chr4	-	3938	3	Intergenic	novelGene_2007	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACTATCTTGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	143715059	143705504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_143705519_143710736_143710949_143711347
99960	chr8	+	3374	12	NNC	ENSMUSG00000031808.8	novel	3207	11	NA	NA	3	448	intron_retention	TRUE	canonical	0	0	junction_11	49.7434741764233	1	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGACACATCCCTTTAAT	NA	False	NA	NA	False	NA	NA	NA	72022325	72040394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_72022486_72023364_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72038137_72038545_72039379_72040207
99961	chr17	+	1633	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	-2	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	712.597930112065	2	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAACAACCGTGTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	35460751	35472654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462088_35462403_35463134_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
99962	chr13	-	3856	4	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7295	297	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	29.9332590941915	16	90	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACCTTGACTTAGCTCC	1299	False	NA	NA	False	NA	NA	NA	67010230	66997417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67000944_67002549_67002611_67002809_67002937_67010088
99963	chr11	-	3174	22	NNC	ENSMUSG00000040594.20	novel	3364	21	NA	NA	3	-203	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	61.6674204770989	2	100	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCAATAAACATTTATTAAC	NA	False	NA	NA	False	NA	NA	NA	33463639	33246596	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33247431_33252766_33252871_33268238_33268348_33268427_33268492_33278443_33278525_33279470_33279545_33287854_33287915_33354081_33354200_33391802_33391939_33402443_33402550_33424886_33425081_33428163_33428337_33429142_33429290_33431021_33431142_33433005_33433080_33435917_33436084_33437642_33437748_33441326_33441393_33443250_33443418_33450679_33450771_33454681_33454829_33463601
99964	chr17	+	1399	2	FSM	ENSMUSG00000023067.15	ENSMUST00000122348.3	1172	2	918	-1145	918	0	multi-exon	FALSE	canonical	3	1159	junction_1	0	3	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	9696	False	NA	NA	False	NA	NA	NA	29317791	29319696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29317812_29318317
99965	chr9	+	4778	1	Intergenic	novelGene_981	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	91	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGGGAGGAGATGTATCC	NA	False	NA	NA	False	NA	NA	NA	4079380	4084158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_4079400_4084200
99966	chr9	+	6383	22	Intergenic	novelGene_1161	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	44	120	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCCTACCCACAGTCCCT	3048	False	NA	NA	False	NA	NA	NA	107617713	107648182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_107618291_107619589_107619898_107621035_107621113_107621382_107621562_107622133_107622205_107622284_107622439_107623219_107623380_107626906_107626999_107627206_107627292_107627661_107627751_107628920_107628991_107629074_107629153_107629309_107629398_107630175_107630273_107631219_107631382_107631621_107631688_107633051_107633113_107634107_107637593_107642695_107642850_107644741_107644908_107646759_107646824_107648082
99968	chr16	-	2531	1	NIC	ENSMUSG00000022962.16	novel	3518	22	NA	NA	-3439	-2253	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTGTGAGAATGATGGATG	1792	False	NA	NA	False	NA	NA	NA	91423344	91420813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_91420800_91423300
99969	chr11	+	2560	1	Intergenic	novelGene_2371	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTTGCCAAAAACACAAAGA	NA	False	NA	NA	False	NA	NA	NA	58232353	58234913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_58232400_58234900
99970	chr17	-	254	3	NNC	ENSMUSG00000014769.11	novel	1970	5	NA	NA	9	-17143	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2548	1	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGTAGGTGCTTTTGAAC	NA	False	NA	NA	False	NA	NA	NA	15718551	15713363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_15713373_15714677_15714786_15718414
99971	chr7	-	1426	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6715.62710679353	2	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGTCTGTTGTTCATGTC	NA	False	NA	NA	False	NA	NA	NA	126398354	126394409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396707_126396810_126396949_126398216
99972	chrM	+	1473	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-273	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	16	False	NA	NA	False	NA	NA	NA	9893	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_11005_11182
99973	chr17	-	2057	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	9	-16	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	134	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGCAGTTTTATACAGTC	NA	False	NA	NA	False	NA	NA	NA	45884170	45878716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878880_45879403_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
99974	chr11	-	4084	4	ISM	ENSMUSG00000000751.14	ENSMUST00000135770.8	2040	17	32238	-954	32238	-1	3prime_fragment	FALSE	canonical	3	1486	junction_1	95.0368349641338	70	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTCTTTGACTGTAAA	NA	False	NA	NA	False	NA	NA	NA	75200776	75191176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940
99975	chrX	-	398	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	253	0	-219	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACAGCAGTGCACGACGC	NA	False	NA	NA	False	NA	NA	NA	151693151	151692753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692800_151693200
99976	chr4	+	3496	5	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078497.10	novel	585	4	NA	NA	-24	2220	multi-exon	FALSE	non_canonical	0	0	junction_1	242.896454276303	3	88	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTCTCATAAAGTATTT	4086	False	NA	NA	False	NA	NA	NA	147314716	147477681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314886_147447267_147447362_147469673_147469759_147472778_147472902_147474656
99977	chr7	+	1874	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	-44	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2898.69849753158	22	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTTGAACAGTGATGG	NA	False	NA	NA	False	NA	NA	NA	46495218	46505034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499943_46500216_46500483_46501300_46501419_46503406_46503531_46504400
99978	chr15	+	3023	6	NIC	ENSMUSG00000009585.19	novel	2225	9	NA	NA	0	-27	intron_retention	FALSE	canonical	3	31	junction_4	250.465486644368	4	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAATAAAGTGGACA	8298	False	NA	NA	False	NA	NA	NA	79776655	79792260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79790804_79791051
99979	chr13	-	2752	8	NNC	ENSMUSG00000052180.16	novel	654	5	NA	NA	-36	17567	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	398.005691683228	14	46	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAACCCCGTCCCTCTTAA	NA	False	NA	NA	False	NA	NA	NA	34089189	34046231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_34046580_34051533_34053094_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
99980	chr10	+	434	4	Antisense	novelGene_ENSMUSG00000025362.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1199	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCGGCGGCTTGCCCGAC	657	False	NA	NA	False	NA	NA	NA	128460405	128462370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_128460505_128461074_128461207_128461931_128462108_128462343
99981	chr14	+	947	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-101	-161	-1	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	3	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	46321483	46322430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
99982	chr12	-	2412	7	Genic_Genomic	ENSMUSG00000112975.2	novel	126	1	NA	NA	-62	38553	multi-exon	TRUE	non_canonical	0	0	junction_1	10.8895974826131	49	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATACTGGAGAGAAATCT	NA	False	NA	NA	False	NA	NA	NA	24302244	24263503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_-_24264040_24264123_24264628_24264879_24265568_24265651_24265960_24267293_24267355_24267554_24267682_24302056
99983	chr10	+	3226	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	1969.14397044283	34	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	2196	False	NA	NA	False	NA	NA	NA	81012479	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013342_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
99984	chr11	+	1073	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17708.5	16	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGGTGTCACTTGTGA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443163_62443252
99985	chr17	-	7355	24	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-5703	25518	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	373.448052632656	60	113	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTCTTCTTTTAAAAGAC	6765	False	NA	NA	False	NA	NA	NA	6740124	6680404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6680562_6697578_6697636_6699276_6699322_6702404_6702530_6702867_6702945_6703293_6706439_6706522_6706589_6706671_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6716930_6719282_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6739982
99986	chr4	-	6583	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-26	63965	intron_retention	TRUE	non_canonical	0	0	junction_1	113.294110859989	174	132	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGATGTAACGACCCT	NA	False	NA	NA	False	NA	NA	NA	146994010	146912187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913176_146913267_146913683_146914354_146914389_146976265_146977116_146978205_146982273_146991977_146992072_146993875
99987	chrX	+	4147	1	Intergenic	novelGene_3974	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	89	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGACAGATTCTCTCCTCT	NA	False	NA	NA	False	NA	NA	NA	90880332	90884479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_90880300_90884500
99988	chr7	+	2382	11	NNC	ENSMUSG00000051900.13	novel	3551	11	NA	NA	80	-8258	intron_retention	FALSE	canonical	0	0	junction_3	1.04403065089106	6	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAATACTCAATAAAATTC	NA	False	NA	NA	False	NA	NA	NA	120008949	120070664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120008990_120026352_120026481_120030330_120030473_120032565_120032826_120035058_120035176_120035872_120035991_120038391_120038566_120052179_120052362_120056273_120056409_120064907_120065026_120069696
99989	chr4	+	2483	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-13	0	multi-exon	TRUE	non_canonical	0	0	junction_2	19.4100489437817	4	89	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	5006	False	NA	NA	False	NA	NA	NA	145241440	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145241589_145343640_145343750_145347127_145347255_145348721_145349346_145350440
99990	chr7	-	2539	24	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.203931119992323	3	39	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGGGAGATGTCCATGGG	9273	False	NA	NA	False	NA	NA	NA	13045351	13020587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13020597_13022597_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033068_13034187_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
99991	chr6	-	3969	15	NNC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-11770	10	intron_retention	FALSE	non_canonical	0	0	junction_5	178.472829922115	4585	116	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACCCGCAAGTTTAGTA	NA	False	NA	NA	False	NA	NA	NA	113366614	113343605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349555_113351739_113351823_113351952_113352221_113352800_113353026_113353852_113353907_113354276_113355169_113357685_113357804_113358921_113359033_113361039_113361137_113362448_113362620_113365729
99992	chr5	+	2358	16	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGCGGTTTTATGACGAAA	NA	False	NA	NA	False	NA	NA	NA	31315745	31337280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317442_31323271_31323348_31325026_31325145_31325326_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331111_31331436_31331577_31331839_31337226
99994	chrM	-	1270	1	Antisense	novelGene_ENSMUSG00000064351.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATAGTAGATAGAGGGT	9523	False	NA	NA	False	NA	NA	NA	6665	5395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_5400_6700
99995	chr11	-	1751	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	49	0	49	0	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1896	False	NA	NA	False	NA	NA	NA	59119047	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
99996	chr19	+	2636	11	Antisense	novelGene_ENSMUSG00000025085.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	31	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CACTGAAAAGAAACAGCAAA	NA	False	NA	NA	False	NA	NA	NA	57036490	57161889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_57037944_57049687_57049837_57056517_57056678_57057290_57057370_57068244_57068302_57071945_57072035_57121292_57121387_57123012_57123141_57140704_57140814_57143582_57143770_57161758
99997	chr17	+	1235	6	NNC	ENSMUSG00000046711.17	novel	917	5	NA	NA	4	-188	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2265.42578779354	1	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGATGGGGCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	27775630	27782449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_27775724_27778506_27778645_27779901_27779986_27780434_27780486_27781411_27781689_27781857
99998	chrM	+	1297	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	319	-71	319	71	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	240	False	NA	26	True	NA	NA	NA	5646	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5600_6900
99999	chr4	-	2199	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	49	-14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	693.592492357397	1	33	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCTGAGGCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	137523646	137469057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469537_137469640_137470014_137470495_137470616_137470945_137471138_137473703_137473755_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483059_137485882_137486044_137523552
100001	chrM	+	1111	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	1056	-343	1056	343	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTAAACCTAAAAACGATC	102	False	NA	5	True	NA	NA	NA	12797	13908	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12800_13900
100002	chr11	+	2197	1	Intergenic	novelGene_2394	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTAAATCAAACATAATGGT	NA	False	NA	NA	False	NA	NA	NA	69472441	69474638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_69472400_69474600
100003	chrX	+	4599	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	98	-20	intron_retention	FALSE	canonical	3	151	junction_10	170.123921775659	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGCTGTTACCTGGCA	NA	False	NA	NA	False	NA	NA	NA	158315812	158376057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158351011_158357940_158358094_158374327_158374354_158375066
100004	chr17	+	1233	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	42	87	42	-87	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	4	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCTCAGTGATGCTGTTG	3078	False	NA	NA	False	NA	NA	NA	35816956	35821582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
100005	chr8	+	2591	17	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	205	-2094	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	843.381009593973	3	35	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGATGTCATGCGCTCT	NA	False	NA	NA	False	NA	NA	NA	111760752	111782202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779140_111782047
100006	chr7	+	1648	15	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	-25	-295	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	454.016362197286	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGACTCCCAGCTGTCCTA	NA	False	NA	NA	False	NA	NA	NA	120234437	120258452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120243283_120243370_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
100007	chr7	-	11348	12	Intergenic	novelGene_2876	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	31	182	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGCTCTCTTGCACTCTT	NA	False	NA	NA	False	NA	NA	NA	7814015	7783483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_7783581_7800075_7802601_7803195_7803664_7803711_7804077_7804151_7804843_7805228_7807186_7807779_7808249_7808296_7808662_7808811_7811771_7812365_7812834_7812881_7813247_7813396
100008	chr12	-	2349	4	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-2	intron_retention	FALSE	canonical	3	7551	junction_2	172.337524126994	568	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636449_111636595_111638014_111638199_111638408_111638663
100009	chr1	+	4192	5	NIC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	3384	-1013	intron_retention	FALSE	canonical	3	463	junction_3	35.3341194881095	1	215	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATTAAAAAAAAAATAA	9187	False	NA	NA	False	NA	NA	NA	34482505	34487006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_34482569_34482643_34482777_34482849_34483005_34483077_34483351_34483438
100010	chr1	+	708	2	Antisense	novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATCACTATGGAGATT	NA	False	NA	NA	False	NA	NA	NA	24653055	24653888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24653500_24653624
100012	chr9	-	1833	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	-13	4	-13	2	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	7	67	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATTGTGTGGCCGTGTTA	NA	False	NA	NA	False	NA	NA	NA	89996840	89973721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
100014	chr9	+	1165	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	6364.39819916227	247	12	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085610
100015	chr15	+	2557	19	NNC	ENSMUSG00000022191.17	novel	4519	35	NA	NA	0	-2001	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	190.490343554875	1	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAACTGACAAGCAGAA	53	False	NA	NA	False	NA	NA	NA	12824948	12883315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834030_12834103_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881810_12883251
100016	chr7	-	2391	19	NNC	ENSMUSG00000036427.6	novel	2884	18	NA	NA	1	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.759435980953	6640	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTCTTAGGGTTTTATT	NA	False	NA	NA	False	NA	NA	NA	33929713	33900757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_33901129_33901570_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
100017	chrX	-	514	2	Genic_Genomic	ENSMUSG00000083596.5	novel	483	1	NA	NA	-32	42	multi-exon	FALSE	canonical	0	0	junction_1	0	5	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCCCAGAGACAAATATGT	NA	False	NA	NA	False	NA	NA	NA	149998677	149998120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_149998439_149998481
100019	chr4	+	910	8	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-40296	-4077	at_least_one_novel_splicesite	FALSE	canonical	2	18	junction_1	265.823710187709	20	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	146493183	146550672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146493332_146502756_146502850_146508052_146508139_146533486_146533533_146541048_146541166_146547961_146548020_146548860_146548988_146550437
100021	chr2	+	4513	6	NNC	ENSMUSG00000078875.11	novel	683	5	NA	NA	-7	2782	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	55.515763527128	1	75	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAACTTGCTTCTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	176692741	176707362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176703022_176703145_176703312
100022	chr4	+	2512	6	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14230	774	multi-exon	TRUE	non_canonical	0	0	junction_2	11.2	3	84	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145159079	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160436_145173032_145173196_145173287_145173346_145176050_145176328_145176410
100023	chr4	+	6651	4	Antisense	novelGene_ENSMUSG00002075852.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	114	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	17282263	17576147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_17284377_17411747_17412966_17537512_17538220_17573534
100024	chr2	+	2419	8	Fusion	ENSMUSG00000094786.2_ENSMUSG00000078866.11	novel	794	4	NA	NA	-1	1066	multi-exon	TRUE	non_canonical	0	0	junction_6	89.2794283501559	1	47	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	177156524	177202622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_177156642_177193535_177193591_177194885_177194988_177198701_177198829_177199035_177199097_177200246_177200525_177200775_177201218_177201385
100025	chr3	+	5746	12	FSM	ENSMUSG00000105692.2_ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	-4	-3804	0	-679	multi-exon	FALSE	canonical	3	34	junction_1	111.217603696091	408	41	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGCTTATCCCACCCCACAG	NA	False	NA	NA	False	NA	NA	NA	89110242	89119792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
100026	chrM	+	2401	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-577	0	577	mono-exon	FALSE	NA	NA	NA	NA	NA	17	62	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGACAAACATACGAAAA	-4	True	NA	4	True	NA	NA	NA	11741	14142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_14100
100027	chr11	+	1893	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	4060.57933797629	9	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAACACAGGTGTAACTAT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642781_75646424_75646507_75647642_75647850_75650117_75650255_75655445
100028	chr14	+	5654	2	Antisense	novelGene_ENSMUSG00000032849.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	104	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCAGGTTGTGGTCTGCT	NA	False	NA	NA	False	NA	NA	NA	118880924	118886666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_118880960_118881047
100030	chrX	-	5066	1	Intergenic	novelGene_4028	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	149	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTACCCAGCTACTCGG	NA	False	NA	NA	False	NA	NA	NA	116231727	116226661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116226700_116231700
100031	chr15	+	1415	3	Intergenic	novelGene_3343	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCAGGATTCTCGCTGTG	NA	False	NA	NA	False	NA	NA	NA	87785310	87794743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_87785451_87791516_87791647_87793598
100032	chr17	-	2440	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	4	-13	intron_retention	FALSE	canonical	0	0	junction_7	4305.62434497019	10	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTTTTATACAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	45884193	45878713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881673_45881923_45882074_45882338_45882546_45882690_45882838_45884092
100033	chr3	+	2170	7	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-23	-292	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1280.69140397764	4	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATTTTGAAGTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	89986998	90007911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994813_89995180_89995784_89997103_89997167_89997316_89997387_90006834
100034	chr4	-	5208	3	Intergenic	novelGene_2104	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	120	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAGAAGAAAGATGAAACC	NA	False	NA	NA	False	NA	NA	NA	146512855	146500235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146500540_146502748_146502848_146508050
100035	chr7	-	4495	5	Antisense	novelGene_ENSMUSG00000072244.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	314.800234275643	3	90	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCACAGCATCAGAGACAT	NA	False	NA	NA	False	NA	NA	NA	103884111	103877912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_103879955_103880992_103881111_103881571_103882774_103882818_103883325_103883484
100036	chr5	+	376	1	Intergenic	novelGene_947	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1478	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGTTCCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197793	146198169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
100037	chr2	-	3426	20	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-10	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	273.159152212905	1	140	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGAGAGGCTGTGAAACG	NA	False	NA	NA	False	NA	NA	NA	5017536	4995540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4996901_4996949_4997688_4997835_4998549_4998668_4999380_4999494_5000531_5000673_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
100038	chr17	-	2333	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	-18	intron_retention	FALSE	non_canonical	0	0	junction_2	3150.19722588657	2	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884195	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879219_45879385_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
100039	chr4	+	2381	9	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242719	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	40.9235186048316	2	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147395014	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395052_147533691_147533956_147536170_147536264_147639766_147639861_147643308_147643399_147661528_147661587_147665698_147665826_147667290_147667445_147668191
100040	chr12	-	2347	5	NNC	ENSMUSG00000113123.3	novel	734	5	NA	NA	26557	2170	intron_retention	TRUE	non_canonical	0	0	junction_1	4.32290411644765	1	88	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTGAAATATAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	22646563	22633719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_22635028_22635195_22635913_22637248_22637310_22637509_22637637_22646429
100041	chr1	-	3632	15	Intergenic	novelGene_429	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	109	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTGGCACCGAGCTGGACG	NA	False	NA	NA	False	NA	NA	NA	118607329	118555742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118555832_118559970_118560122_118580028_118580106_118580596_118580703_118581443_118581550_118584094_118584247_118586734_118586847_118589707_118589800_118592486_118592538_118592627_118592717_118593840_118593935_118596358_118596464_118597117_118597260_118603302_118603355_118605115
100042	chr4	-	2619	5	NNC	ENSMUSG00000093594.2	novel	2516	4	NA	NA	28	-431	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	17	61	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTCCTGTGTGCGTCTG	9499	False	NA	NA	False	NA	NA	NA	147894269	147867206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147868955_147889671_147889987_147891535_147891641_147893153_147893289_147893953
100043	chr16	-	705	1	Intergenic	novelGene_3621	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATTTTTTTAAGGATTA	NA	False	NA	NA	False	NA	NA	NA	22917305	22916600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_22916600_22917300
100044	chr9	+	892	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	279	-319	279	319	mono-exon	FALSE	NA	NA	NA	NA	NA	23	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTTGGAAAAGGACATCT	NA	False	NA	NA	False	NA	NA	NA	16941619	16942511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_16941600_16942500
100045	chr1	-	629	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	55	-30	55	30	mono-exon	FALSE	NA	NA	NA	NA	NA	7	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	65033708	65033079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_65033100_65033700
100046	chr17	+	1906	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1039.68335135001	5	51	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135290	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141613_13142104_13142298_13142416_13142581_13143146
100049	chrM	-	2610	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	59	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAGTTCAGAGTGTTCAT	9986	False	NA	-1	True	NA	NA	NA	3710	1100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_3700
100050	chr16	+	1498	8	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	663.234867747405	34	2	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929420_22931948
100051	chr2	+	686	5	Antisense	novelGene_ENSMUSG00000018770.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	1	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCGCGCAAGCGCGGTGCG	NA	False	NA	NA	False	NA	NA	NA	73738790	73741644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_73739052_73739527_73739721_73740206_73740287_73741301_73741405_73741595
100052	chr14	-	605	1	ISM	ENSMUSG00000022100.15	ENSMUST00000167242.8	15121	28	103893	7885	22822	2687	mono-exon	FALSE	NA	NA	NA	NA	NA	6	4	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTACAGTGCAAACCAAAG	NA	False	NA	NA	False	NA	NA	NA	70900175	70899570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_70899600_70900200
100053	chrM	-	2096	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACAATGGTTAAAAGCTGT	1	True	NA	7	True	NA	NA	NA	3702	1606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1600_3700
100054	chrM	+	748	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	94	-161	-94	mono-exon	FALSE	NA	NA	NA	NA	NA	7	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTACTCACAATTCTAG	-11	True	NA	NA	False	NA	NA	NA	7765	8513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8500
100055	chr5	+	984	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	370	251	214	-251	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	1	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTGAGAAAGATGGAAATAA	NA	False	NA	NA	False	NA	NA	NA	115697895	115701535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
100056	chr7	+	1844	2	NNC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	10351	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGAAACCAGACTTGCT	15	False	NA	NA	False	NA	NA	NA	44478211	44480222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_44478625_44478791
100057	chr6	-	6164	12	Genic_Genomic	ENSMUSG00000108681.2_ENSMUSG00000108466.2	novel	794	1	NA	NA	-5251	-293	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	140	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTAGCTGCGTCCGG	NA	False	NA	NA	False	NA	NA	NA	71852240	71808361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_71808498_71821620_71821693_71823265_71823459_71828754_71829850_71830154_71830253_71833895_71834031_71837984_71838089_71839326_71839463_71840122_71840261_71845555_71848540_71849774_71849908_71851300
100058	chr3	+	920	4	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6738.18269268502	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570489_137571280_137571395_137571771_137571902_137572146
100059	chr4	+	992	1	Intergenic	novelGene_1791	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCCGGGTATAGCAGGCTG	NA	False	NA	NA	False	NA	NA	NA	3401034	3402026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_3401000_3402000
100061	chr13	-	4155	2	Intergenic	novelGene_1557	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	117	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTACTCTGATCAAGGC	NA	False	NA	NA	False	NA	NA	NA	113860378	113855161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_113858192_113859253
100063	chr5	-	683	1	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	2956	1	-144	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGTGGCTCTGTGGCTT	5684	False	NA	-55	True	NA	NA	NA	142889553	142888870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142888900_142889600
100064	chr5	-	1176	1	Antisense	novelGene_ENSMUSG00000096617.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	205	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGAGCTTGACGGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	96010683	96009507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96009500_96010700
100065	chr17	+	3075	15	ISM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	5056	38	-3259	-38	3prime_fragment	FALSE	canonical	3	1413	junction_4	288.826734657755	4	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTAACATATTGCAATAAAA	2904	False	NA	NA	False	NA	NA	NA	56616403	56630448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
100066	chr10	+	4590	1	Intergenic	novelGene_3418	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	27916988	27921578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_27917000_27921600
100067	chrM	+	1579	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-202	1	-202	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTGAATATAGTTTACAAAA	87	False	NA	NA	False	NA	NA	NA	9964	11543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10000_11500
100068	chr19	+	2798	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1009.02038576477	5	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1481	False	NA	NA	False	NA	NA	NA	44282526	44295303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44291946_44294188
100069	chr2	-	2234	13	NNC	ENSMUSG00000033808.17	novel	2874	20	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.090764902051	5	68	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	120234546	120185792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_120187036_120190519_120190576_120193359_120193419_120193842_120193917_120199724_120199829_120200923_120200983_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
100070	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
100072	chr2	+	561	1	Intergenic	novelGene_2579	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	31	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGCCAAGCAACCCGATTC	NA	False	NA	NA	False	NA	NA	NA	22634424	22634985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_22634400_22635000
100073	chr15	+	1601	11	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	59	616	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	321.338590897514	1	39	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGGCTGCCAGCCCCTC	NA	False	NA	-35	True	NA	NA	NA	101982357	102004250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994993_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_102000025_102004024
100074	chr13	+	2374	7	Antisense	novelGene_ENSMUSG00000052180.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	26	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTCACTCCCAGGCCTC	4745	False	NA	NA	False	NA	NA	NA	34051563	34089189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34053094_34064604_34064763_34077788_34077930_34079251_34079370_34081326_34081479_34083243_34083423_34089093
100075	chr9	-	6129	21	NNC	ENSMUSG00000032580.13	novel	6321	23	NA	NA	868	0	intron_retention	FALSE	non_canonical	0	0	junction_3	205.528100268552	1	199	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTCTTTATTGAG	9857	False	NA	NA	False	NA	NA	NA	107646826	107617693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107618292_107619590_107619721_107619799_107619887_107621031_107621111_107621381_107621558_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107637591_107642693_107642850_107644741_107644908_107646759
100076	chr5	+	6193	3	Intergenic	novelGene_726	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	168	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGTGGTCCTGGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	71541537	71567193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_71545340_71564666_71566472_71566607
100077	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
100078	chr4	+	983	8	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-40223	-4077	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	271.354200337523	5	36	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	NA	NA	NA	146493256	146550672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146493332_146500372_146500584_146502756_146502850_146508052_146508139_146533486_146533585_146547961_146548020_146548860_146548988_146550437
100079	chr4	+	2814	16	Antisense	novelGene_ENSMUSG00000089265.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	91	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGTGGATTCTCGGGGT	3116	False	NA	NA	False	NA	NA	NA	41194318	41206963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_41195249_41195338_41195528_41195609_41195672_41195744_41195852_41195941_41196042_41196325_41196532_41196727_41196808_41199216_41199266_41199493_41199585_41199714_41199903_41201463_41201534_41202273_41202460_41203533_41203573_41205523_41205740_41206154_41206330_41206837
100080	chr17	-	2209	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-234	1	intron_retention	FALSE	non_canonical	0	0	junction_7	4494.68723420588	4	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45882742	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881700_45882031_45882104_45882336_45882546_45882690
100081	chr17	+	3916	2	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAACGCATGCGTTCAAC	NA	False	NA	NA	False	NA	NA	NA	32533929	32540120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32537786_32540060
100083	chr6	+	3170	1	Intergenic	novelGene_4152	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCAGGCCTCTTCAAGA	NA	False	NA	NA	False	NA	NA	NA	47134327	47137497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_47134300_47137500
100084	chr3	-	3051	13	Antisense	novelGene_ENSMUSG00000007379.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	96	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAGTTACAAGGTGCTA	NA	False	NA	NA	False	NA	NA	NA	103077054	103039357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_103039645_103040527_103040662_103041054_103041166_103044456_103044628_103048372_103048470_103053825_103053872_103056354_103056537_103059606_103059717_103060950_103061022_103061802_103061880_103063353_103063495_103064115_103064129_103075443
100085	chr4	+	2535	7	Fusion	ENSMUSG00000082248.2_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-72	0	multi-exon	FALSE	non_canonical	0	0	junction_1	39.0939040431284	664	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147527855	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147527997_147578832_147578926_147637751_147637884_147639766_147639852_147665698_147665826_147667290_147667431_147667838
100086	chr2	+	4099	1	ISM	ENSMUSG00000027164.9	ENSMUST00000004949.8	6169	8	18428	703	12653	-703	mono-exon	FALSE	NA	NA	NA	NA	NA	1	132	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAAAGAGTTGTAGT	NA	False	NA	NA	False	NA	NA	NA	101527212	101531311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_101527200_101531300
100087	chr12	-	730	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	-7	231	-7	-1	multi-exon	FALSE	canonical	3	10789	junction_4	2567.89392736971	21	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGTTGTAGTAACTTG	NA	False	NA	NA	False	NA	NA	NA	28685959	28681083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
100089	chr9	+	1293	9	NIC	ENSMUSG00000061393.15	novel	3175	11	NA	NA	-2365	-2	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	44.9678704743731	1	52	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGGAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	119257046	119262579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_119257143_119257290_119257419_119257490_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
100090	chr1	-	2023	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	150	-217	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1842.09668539605	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCTGGGTGCAAGAGC	4605	False	NA	NA	False	NA	NA	NA	55127033	55117210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117912_55118292_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
100091	chr3	+	2817	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	60	2604	31	202	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	1	114	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	NA	False	NA	NA	False	NA	NA	NA	41510225	41568695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
100092	chr14	-	5804	37	NNC	ENSMUSG00000025558.20	novel	7368	53	NA	NA	-23606	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_19	13.644290625264	39	67	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAGGACAGGGTACCT	NA	False	NA	NA	False	NA	NA	NA	121866262	121779532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223_121829361_121831747_121831796_121832953_121833021_121835053_121835163_121837099_121837234_121842583_121842702_121844222_121844337_121844512_121844692_121846567_121846680_121847173_121847258_121847434_121847582_121856874_121856947_121858706_121858833_121859693_121859764_121860257_121860374_121862567_121862658_121863314_121863402_121864228_121864351_121864706_121864831_121865203_121865297_121865920_121865987_121866136
100094	chr1	-	3368	4	NNC	ENSMUSG00000033845.14	novel	1569	4	NA	NA	-4	384	intron_retention	TRUE	non_canonical	0	0	junction_1	1086.98492272074	57	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTCTGAAGGTCTGAAGT	1657	False	NA	NA	False	NA	NA	NA	4855925	4849805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_4851853_4851920_4852957_4854173_4854329_4855795
100095	chr17	+	3257	17	NNC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	656.93492531129	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	NA	False	NA	NA	NA	56611347	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625048_56625277_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
100096	chr15	-	2362	8	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-29	intron_retention	FALSE	canonical	3	16287	junction_7	5307.90272968101	258	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGTCTCACCAATAAAATA	3572	False	NA	NA	False	NA	NA	NA	79967553	79962024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965985_79966590_79966784_79967524
100097	chr6	-	952	4	Genic_Genomic	ENSMUSG00000107608.2	novel	1192	1	NA	NA	-6682	8715	multi-exon	FALSE	non_canonical	0	0	junction_1	13.6707311029399	13	5	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCGCTCGGCTTCGCTCG	6392	False	NA	NA	False	NA	NA	NA	117901365	117884776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_117884839_117894428_117894559_117896058_117896126_117900672
100099	chr14	-	10136	53	NNC	ENSMUSG00000044447.6	novel	9988	52	NA	NA	39514	190	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	18.5045472581949	129	77	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCAGTTTGTTCCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	68131367	67989393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_67992687_67992732_67993972_67994556_67994658_67995385_67995525_67996479_67996649_68000608_68000776_68002042_68002181_68003305_68003390_68004701_68004879_68007680_68007768_68008456_68008542_68009137_68009220_68010500_68010643_68011941_68012047_68013694_68013785_68015021_68015142_68017727_68017819_68018448_68018490_68019442_68019603_68022248_68022335_68023721_68023877_68024273_68024333_68027668_68027770_68029669_68029749_68031384_68031480_68033418_68033518_68037791_68037888_68040431_68040569_68043178_68043286_68043871_68043943_68044710_68044823_68046453_68046589_68049590_68049692_68051376_68051467_68051724_68051823_68054961_68055146_68056135_68056240_68057089_68057163_68058767_68058867_68059994_68060120_68062048_68062175_68065809_68065953_68069666_68069740_68073762_68073893_68076995_68077078_68078458_68078617_68080213_68080350_68083437_68083587_68095351_68095449_68097347_68097404_68103480_68103522_68118647_68118732_68131222
100100	chr7	-	2684	24	NNC	ENSMUSG00000003435.10	novel	3640	31	NA	NA	270	443	intron_retention	FALSE	non_canonical	0	0	junction_20	251.013672723499	3	10	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCATCCCCCCAGGTCAAT	NA	False	NA	NA	False	NA	NA	NA	28037861	28015765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28015867_28016208_28016315_28016410_28016539_28016640_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037423_28037449_28037776
100101	chr11	+	1719	10	Antisense	novelGene_ENSMUSG00000119662.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	38	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTCTGGATCTGTTGAT	NA	False	NA	NA	False	NA	NA	NA	69557764	69561790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69558444_69558519_69558600_69558846_69558938_69559021_69559160_69559232_69559373_69559467_69559580_69559903_69560073_69560958_69561097_69561438_69561574_69561753
100102	chr3	+	2808	11	NNC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	31	202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	241.422886239064	1	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	NA	False	NA	NA	False	NA	NA	NA	41510225	41568695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559450_41564269_41564356_41567557
100103	chr4	-	7103	15	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	61	3	intron_retention	FALSE	non_canonical	0	0	junction_12	352.347202373466	7	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGCCACTCACATTTA	NA	False	NA	-12	True	NA	NA	NA	135074454	135047798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068367_135069501_135071291_135071809_135074169_135074425
100105	chr18	+	1845	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	269	357	6	-143	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	3	87	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTAGTTTGTGTGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	77861697	77870212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
100107	chr15	+	1866	2	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-80048	-144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	79	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATAGTGCTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	98847723	98935847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98848767_98935024
100108	chr5	-	1912	1	Intergenic	novelGene_671	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	52	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCACATGCGTTTCTTTG	NA	False	NA	NA	False	NA	NA	NA	25104955	25103043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_25103000_25105000
100109	chr19	-	3573	18	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-18247	-6553	intron_retention	FALSE	non_canonical	0	0	junction_1	0	11	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACACGTTGCAGGCCAGA	4626	False	NA	NA	False	NA	NA	NA	10601265	10582948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10587153_10588177_10589003_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887
100110	chr12	+	6905	7	NNC	ENSMUSG00000079108.7	novel	3642	16	NA	NA	-184490	-31022	intron_retention	FALSE	non_canonical	0	0	junction_1	0	9	124	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCCAACCATTTCCATGC	NA	False	NA	NA	False	NA	NA	NA	55092462	55278783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_55092731_55095673_55095763_55100085_55104137_55106240_55106363_55107838_55107979_55109772_55109894_55276669
100111	chr5	-	4438	4	Intergenic	novelGene_774	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	71	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGATTTCAGAAAGAACCCT	NA	False	NA	NA	False	NA	NA	NA	104789517	104757287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_104757423_104783722_104783849_104784090_104784153_104785402
100112	chr17	-	2507	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	1	intron_retention	FALSE	non_canonical	0	0	junction_4	3302.60490522254	8	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884195	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880407_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
100113	chr13	-	482	1	Antisense	novelGene_ENSMUSG00000076033.3_AS_novelGene_ENSMUSG00000062382.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGCCCCCGCGATCGTTCTG	8421	False	NA	NA	False	NA	NA	NA	74555431	74554949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_74554900_74555400
100115	chrX	-	1225	9	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	0	-1931	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	374.320384163086	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATCCCCTCATATCCAAC	NA	False	NA	NA	False	NA	NA	NA	93256257	93234243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241053_93247602_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
100116	chr4	+	3834	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	62	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	187.01080182706	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145397316	145431010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474_145429357_145429465
100117	chr6	-	1955	11	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2601.09890046496	4	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	-11	True	NA	NA	False	NA	NA	NA	7693225	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676295_7677833_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
100118	chr1	-	2884	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	21	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	644.891742368438	1	72	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACATGTGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	20890515	20873242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887642_20888057_20888130_20890354
100119	chr9	+	1233	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1540	155	1522	-155	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	16	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAAACCCTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	64082196	64085793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
100120	chr4	+	2496	8	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-5	269398	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2.44948974278318	1	102	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	147056427	147344610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056569_147067197_147067255_147071090_147071214_147073383_147074004_147074087_147074297_147074464_147074821_147075155_147075834_147344298
100121	chrX	-	3520	13	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	312.641656782259	2	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	NA	False	NA	NA	NA	93256252	93232312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93239902_93239965_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
100122	chr4	-	1757	2	FSM	ENSMUSG00000028741.14	ENSMUST00000123968.2	662	2	-224	-871	-1	-244	multi-exon	FALSE	canonical	3	1002	junction_1	0	2	35	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCACTGGCCCTCACTAT	5738	False	NA	NA	False	NA	NA	NA	139079845	139076314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_139077806_139079579
100123	chr4	+	4785	19	NNC	ENSMUSG00000028580.16	novel	5389	22	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_3	188.351883714407	1	173	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	NA	False	NA	NA	NA	130390679	130508875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130390779_130396235_130396515_130428352_130428422_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
100124	chr11	+	1156	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	10	-172	-10	multi-exon	FALSE	canonical	3	35417	junction_1	0	19	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGCATATATGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
100126	chr4	+	2949	9	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	-19	-1901	multi-exon	TRUE	non_canonical	0	0	junction_2	41.4395267226835	2	47	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146200109	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146291416_146291514_146368119_146368239_146384314_146384431_146388486_146388614_146390758_146390904_146391317_146392575_146392742_146393398_146552578
100127	chr4	-	3669	11	NIC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	70	-14	intron_retention	FALSE	canonical	3	1320	junction_10	105.68708530374	4	138	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCTGAGGCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	137523625	137469057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
100128	chr2	+	3701	7	FSM	ENSMUSG00000026829.10_ENSMUSG00000063611.6	ENSMUST00000163121.8	1335	7	-9	-2357	-9	-1	multi-exon	FALSE	canonical	1	1	junction_1	2.21108319357027	28	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAAGTTGCCTTGGTCATG	4566	False	NA	NA	False	NA	NA	NA	28386893	28397784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_28387077_28387680_28387849_28388387_28388454_28392078_28392130_28392208_28392245_28393137_28393273_28394722
100129	chr6	+	1651	8	NNC	ENSMUSG00000036371.7	novel	15474	8	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2682.47906205572	9	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGCTTTCACTTCATTT	5853	False	NA	NA	False	NA	NA	NA	67243975	67261293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254915_67258631_67258786_67260886
100130	chr17	+	3137	11	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	7	-25	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	1055.11961407226	3	77	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTTGTTTTTTAACAAAA	NA	False	NA	NA	False	NA	NA	NA	35460787	35472627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35460829_35462222_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35468549_35470355_35471722_35471833_35471958_35472085_35472182_35472331_35472448
100131	chr13	+	5132	8	Fusion	ENSMUSG00000113295.2_ENSMUSG00000113836.2	novel	378	3	NA	NA	3	1306	multi-exon	TRUE	non_canonical	0	0	junction_2	15.3967926689228	4	284	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCCAATATTGGCTAATAT	NA	False	NA	NA	False	NA	NA	NA	61803119	62200106	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_61803248_61803432_61803494_61841560_61841581_61891418_61891834_61892166_61893636_62007742_62009409_62197369_62197539_62198902
100132	chr13	+	3501	6	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-29	1310	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	129.134658399672	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATATTGGCTAATATCTAT	NA	False	NA	NA	False	NA	NA	NA	62163768	62200110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729_62197241_62197324_62197752_62197833
100134	chr7	-	549	2	NNC	ENSMUSG00000087412.5	novel	849	2	NA	NA	48	13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGATGTTTACTGG	NA	False	NA	NA	False	NA	NA	NA	92828804	92828176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_92828536_92828614
100135	chr17	+	3139	2	ISM	ENSMUSG00000039218.18	ENSMUST00000088621.11	8564	14	15583	2077	-504	4	internal_fragment	FALSE	canonical	3	161	junction_1	0	3	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAGCCCCAAGAAGCCAC	2448	False	NA	NA	False	NA	NA	NA	24037777	24041638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_24040665_24041386
100136	chr1	+	4847	23	NNC	ENSMUSG00000041757.18	novel	4820	22	NA	NA	23375	1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	7.82359749002659	25	48	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTAGTGAAGCACTCTC	205	False	NA	NA	False	NA	NA	NA	133132433	133228955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_133132520_133186746_133186828_133187779_133187895_133191534_133191640_133192398_133192472_133194303_133194405_133197797_133197941_133199946_133200430_133201595_133202113_133208076_133208146_133209520_133209602_133209854_133210005_133211008_133211105_133212617_133212730_133212984_133213125_133215207_133215338_133215511_133215619_133220089_133220267_133221443_133221612_133221691_133221826_133222300_133222447_133226657_133226782_133227446
100137	chr9	+	748	6	NNC	ENSMUSG00000032518.7	novel	1938	7	NA	NA	-1	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1907.89521724858	3	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTCTTATGGTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	119956853	119960620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959340_119960122_119960232_119960465
100138	chr2	-	3220	3	Antisense	novelGene_ENSMUSG00000059005.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	90	69	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCCACCACCTCCAAAGT	NA	False	NA	NA	False	NA	NA	NA	75496465	75493066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_75495494_75495576_75495644_75495739
100139	chr16	+	4022	7	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	717.601967202803	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
100140	chr4	+	2615	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-238	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.962960031426	2	104	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATCCTTAAAAGAGTA	924	False	NA	NA	False	NA	NA	NA	145237358	145265520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237383_145257381_145257486_145261385_145261513_145263160
100141	chr9	-	4051	9	NNC	ENSMUSG00000010205.12	novel	3470	13	NA	NA	9	-2786	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	213.295569574241	5	111	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCCCAACTCCCAAGACATA	NA	False	NA	NA	False	NA	NA	NA	21003295	20988239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_20990811_20990896_20991100_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992648_20997540_20998011_21001545_21001613_21003054
100142	chr10	+	6556	15	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	149	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGCCTGCCGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	62647554	62728637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652251_62654717_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673965_62675683_62676134_62676160_62700588_62700639_62713928_62714910_62715050_62715913_62728473
100143	chr9	-	6145	21	ISM	ENSMUSG00000032580.13	ENSMUST00000183307.8	6321	23	3284	2	-100	-1	3prime_fragment	FALSE	canonical	3	356	junction_19	79.803806300201	9	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTCCTGTGTCTTTATTG	7332	False	NA	NA	False	NA	NA	NA	107644896	107617695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107637591_107642693_107642850_107644741
100144	chr5	-	375	1	FSM	ENSMUSG00000072692.8	ENSMUST00000124641.2	294	1	-37	-44	-37	7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATTAATCCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	115241617	115241242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_115241200_115241600
100146	chr13	-	2966	4	Antisense	novelGene_ENSMUSG00000063905.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	33.9411254969543	5	87	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAATATCCCAGAAACGT	NA	False	NA	NA	False	NA	NA	NA	65662556	65658192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65658317_65658516_65658579_65659711_65661132_65661196
100148	chr17	+	776	3	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1165	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCTTAGTCACTGAGACC	NA	False	NA	NA	False	NA	NA	NA	45878721	45879896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879491_45879785
100149	chr13	-	3936	3	NIC	ENSMUSG00000021660.15	novel	569	4	NA	NA	3	-72	intron_retention	FALSE	canonical	3	6398	junction_2	105.5	6	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACACTGCAGCTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	98453501	98446521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_98450261_98452737_98452807_98453373
100151	chr1	-	2721	17	NNC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	13	-1635	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	134.14834081624	1	111	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAACCCTCACCA	NA	False	NA	NA	False	NA	NA	NA	133589105	133549243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568467_133573464_133573585_133575073_133575268_133581710_133581771_133588993
100152	chrX	+	3418	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	-201	-5	-201	0	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	2	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	163202581	163216912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
100153	chr7	+	3245	5	FSM	ENSMUSG00000011427.17	ENSMUST00000178162.3	3356	5	86	25	81	-25	multi-exon	FALSE	canonical	2	3	junction_1	16.6789538041209	1	118	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGAAAAGCTAATTTATT	NA	False	NA	NA	False	NA	NA	NA	29515624	29530405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_29515715_29522494_29522570_29524254_29524379_29525116_29525213_29527545
100154	chr18	-	4103	20	NIC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	-2	932	combination_of_known_splicesites	FALSE	canonical	2	130	junction_9	348.770964381452	3	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCACTCTGGCAGGCAGT	NA	False	NA	NA	False	NA	NA	NA	60981992	60950169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964845_60965068_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
100155	chr5	+	384	1	Intergenic	novelGene_944	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197791	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
100157	chr5	-	1826	1	ISM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	1751	473	923	-461	mono-exon	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGATCTTTGTGAAGAC	NA	False	NA	NA	False	NA	NA	NA	125465327	125463501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125463500_125465300
100158	chr4	-	1183	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-109	-72	109	mono-exon	FALSE	NA	NA	NA	NA	NA	15	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	91740978	91739795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739800_91741000
100159	chr8	+	514	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	5	19	5	-19	mono-exon	FALSE	NA	NA	NA	NA	NA	16	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTGAGTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87774321	87774835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_87774300_87774800
100160	chr14	-	2950	26	NNC	ENSMUSG00000115090.2	novel	614	2	NA	NA	-115298	95966	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	7	11	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCGGCGAGCGGGACAGGAA	1667	False	NA	NA	False	NA	NA	NA	79299965	79086653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_79086888_79106222_79106297_79145562_79145692_79149606_79149718_79162699_79162870_79171105_79171269_79172031_79172084_79172622_79172729_79174541_79174648_79184578_79184717_79186727_79186857_79186937_79187016_79219673_79219835_79221626_79221741_79231837_79232008_79232524_79232604_79246225_79246314_79246607_79246717_79256043_79256157_79258022_79258124_79263442_79263517_79275564_79275640_79294084_79294162_79296111_79296246_79297965_79298083_79299917
100161	chr13	+	1827	3	NNC	ENSMUSG00000074867.5	novel	449	4	NA	NA	-50	491	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	12.5	1	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTATGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62367319	62384449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62367452_62381070_62381181_62382864
100162	chr11	+	3787	24	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	1058	-221	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	573.622050734494	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72333260	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334737_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
100163	chr14	-	3403	16	ISM	ENSMUSG00000025558.20	ENSMUST00000212181.2	7368	53	106551	-270	134	-90	3prime_fragment	FALSE	canonical	3	40	junction_9	8.66410218468519	2	52	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAACTGGAATCACTGCC	NA	False	NA	NA	False	NA	NA	NA	121829278	121779647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605_121787797_121792527_121792739_121796398_121796546_121798001_121798116_121799466_121799590_121813324_121813432_121815566_121815625_121817896_121818113_121818743_121818858_121820769_121820953_121821073_121821212_121823638_121823755_121829223
100164	chr18	-	2581	17	NNC	ENSMUSG00000024359.11	novel	3049	17	NA	NA	55	-410	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	1564.51365745876	2	39	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCAGTGGATAGCAGTTGTG	254	False	NA	NA	False	NA	NA	NA	35087355	35070876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082192_35084276_35084459_35085448_35085537_35085729_35085789_35087222
100165	chr4	+	2324	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-36	-10	multi-exon	FALSE	non_canonical	0	0	junction_2	36.8811906291299	1	27	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCAACAAGTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	147209676	147669645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147545579_147545711_147578832_147578918_147665698_147665826_147667290_147667431_147668006
100166	chr1	+	4428	11	NNC	ENSMUSG00000026554.16	novel	4656	13	NA	NA	-12	-3	intron_retention	FALSE	canonical	0	0	junction_7	263.584312886788	1	93	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGGATGTATCAAGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	171975732	172023030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003178_172007473_172007585_172013862_172013936_172014919_172015085_172016505_172016637_172020084_172020205_172021351
100167	chr15	-	3454	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	9801	False	NA	NA	False	NA	NA	NA	22705089	22699885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22703128_22704877
100168	chr13	+	2759	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-5	519	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	113.706859951368	24	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62277724	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62320809_62321144
100170	chr3	-	4338	3	Antisense	novelGene_ENSMUSG00000025764.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	118	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAAGGCTGTCCGGCAGT	NA	False	NA	NA	False	NA	NA	NA	41571288	41558937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_41559426_41564236_41564354_41567555
100172	chr17	-	1480	3	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	41	791	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5086.5	1	60	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGGAATGTCTCCTTTC	NA	False	NA	NA	False	NA	NA	NA	36149157	36145705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146828_36147539_36147629_36148888
100173	chr2	+	3559	8	NIC	ENSMUSG00000027282.18	novel	1047	13	NA	NA	-1100	1	intron_retention	FALSE	canonical	3	2343	junction_7	152.052085597975	6	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGATTGGTGTCTGCCTTT	2044	False	NA	NA	False	NA	NA	NA	90681434	90695736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90691794_90693933_90694010_90695527
100174	chr17	+	1002	1	NIC	ENSMUSG00000024160.17	novel	1641	7	NA	NA	102	-2578	mono-exon	FALSE	NA	NA	NA	NA	NA	1	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGCTGTGGCTCTGGCAG	NA	False	NA	NA	False	NA	NA	NA	25105834	25106836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_25105800_25106800
100175	chrM	+	898	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	246	0	-246	mono-exon	FALSE	NA	NA	NA	NA	NA	5	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGCCCTAATACCTTTC	-2	True	NA	87	True	NA	NA	NA	14144	15042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15000
100176	chr11	-	5187	3	Intergenic	novelGene_2304	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	154	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTGTATGACCATGGGC	NA	False	NA	NA	False	NA	NA	NA	57450923	57433805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57434019_57445909_57450453_57450492
100177	chr19	+	5077	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-496	-11	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	1073.59396421552	2	192	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCAAAATGTCTCGTG	571	False	NA	NA	False	NA	NA	NA	44281616	44295292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44281988_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
100179	chr11	+	2952	22	NNC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	-6	-1210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	150.039148330514	1	87	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGCACAAGAACCAAGGCTA	NA	False	NA	NA	False	NA	NA	NA	6241626	6305368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289852_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290
100180	chr6	+	6298	9	NIC	ENSMUSG00000029823.17	novel	3906	8	NA	NA	-1217	787	intron_retention	FALSE	canonical	3	8	junction_1	51.4925662110561	2475	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAGGTGTTGAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	38545819	38584089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_38547540_38547976_38548024_38561975_38562075_38566110_38566222_38568222_38568367_38569553_38569731_38570312_38570405_38575719_38575750_38580211
100181	chr2	-	1872	4	NIC	ENSMUSG00000006471.19	novel	4517	12	NA	NA	909	-3	intron_retention	FALSE	canonical	3	158	junction_2	9.89949493661167	1	21	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGGTAGCCGCTCACTT	NA	False	NA	NA	False	NA	NA	NA	25139445	25137243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_25137867_25137971_25138067_25138133_25138759_25138916
100182	chr17	+	3048	7	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	68	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGACCCGCCAGCAGATCC	7832	False	NA	NA	False	NA	NA	NA	32529565	32540085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32529645_32529925_32530068_32531258_32532239_32534394_32534463_32534628_32536331_32537733_32537786_32540060
100183	chr3	+	429	1	Intergenic	novelGene_3063	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGGGGCGAGCCCAGAG	NA	False	NA	NA	False	NA	NA	NA	5925398	5925827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925800
100184	chr4	+	3013	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	1	0	1	0	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	24	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5273	False	NA	NA	False	NA	NA	NA	108436651	108472030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
100185	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
100186	chr4	+	3733	8	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-31	3	multi-exon	TRUE	non_canonical	0	0	junction_2	233.551724813295	2	52	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	147056401	147145254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147058404_147058498_147127932_147128069_147136962_147137048_147140055_147140191_147141715_147142251_147142339_147143598_147143936
100187	chr5	+	992	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	268	1163	268	-1163	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	2	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAACAAGTGAATCATCC	813	False	NA	NA	False	NA	NA	NA	129097603	129100224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
100188	chr1	+	3289	14	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-20	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	146.357590779222	1	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTTATTAAACCACAAG	NA	False	NA	NA	False	NA	NA	NA	132405208	132433384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418216_132418324_132420337_132420401_132421552_132421673_132421758_132421913_132422007_132422077_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
100189	chr1	-	4716	19	NIC	ENSMUSG00000026571.13	novel	4110	19	NA	NA	184	-3	intron_retention	FALSE	canonical	2	6	junction_9	12.2065556157337	28	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTAAATTTGACTTTTTA	NA	False	NA	NA	False	NA	NA	NA	165287850	165157076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165167593_165178452_165178850_165179040_165179110_165179529_165179646_165184997_165185116_165195014_165195075_165216226_165216485_165217982_165218103_165219707_165219802_165227222_165227438_165239032_165239169_165247679_165247794_165250424_165250611_165251870_165251964_165256822_165256885_165287699
100190	chr4	+	3085	11	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	9	182326	multi-exon	FALSE	non_canonical	0	0	junction_2	65.5377753665777	1	40	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACAAGGTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147216503	147600517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147219028_147219122_147316807_147316901_147390101_147390233_147393100_147393194_147409273_147409335_147413438_147413566_147415724_147415863_147416278_147416586_147416670_147418073_147600191
100191	chr5	+	373	1	Intergenic	novelGene_956	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	238	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197802	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
100192	chr17	-	2365	10	NIC	ENSMUSG00000024045.7	novel	4183	13	NA	NA	6	3245	intron_retention	FALSE	canonical	3	51	junction_3	211.752476044818	5	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCCTAAACCCAAACCAGA	NA	False	NA	NA	False	NA	NA	NA	32540127	32529582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_32529646_32529926_32530069_32531259_32531348_32532078_32532237_32533084_32533119_32534415_32534463_32534628_32536321_32536819_32536853_32537744_32537784_32540058
100193	chr5	+	1877	17	Antisense	novelGene_ENSMUSG00000041890.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGCGCCTCTCCCCCCCG	3542	False	NA	NA	False	NA	NA	NA	114869055	114911516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_114869119_114871255_114871442_114871921_114872004_114875408_114875499_114877093_114877343_114883489_114883635_114886246_114886356_114887302_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899728_114902406_114902536_114902646_114902719_114904503_114904622_114907680_114907815_114911377
100194	chr14	+	2122	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	1	1100	1	-4	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	1	90	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271088	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
100195	chr16	-	2058	16	NNC	ENSMUSG00000025613.14	novel	2394	15	NA	NA	19	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2185.21049075115	1	26	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATTTACTTAGGTGAAC	NA	False	NA	NA	False	NA	NA	NA	87292728	87280222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_87280462_87280639_87280906_87281687_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285800_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292655
100196	chr4	+	2405	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-6	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0169885798519	7	21	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206894	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146291416_146291514_146368119_146368159_146388486_146388614_146390758_146390897_146391646_146392051_146392386_146393429_146552609
100197	chr10	+	2686	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	229	7	142	-7	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	5	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAAGTGTCATATTTTG	NA	False	NA	NA	False	NA	NA	NA	41395638	41407037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
100198	chr4	-	3726	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	5	-11	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_14	415.714817739976	1	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCTAAATTTAAGAACATT	NA	False	NA	NA	False	NA	NA	NA	135080508	135047812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135073685_135073757_135074045_135074169_135074425_135074516_135080407
100199	chr15	-	1752	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	intron_retention	FALSE	canonical	3	214	junction_6	10121.6572630178	24	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
100200	chr19	-	5154	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	218	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGTGGTGTATGACCGT	NA	False	NA	NA	False	NA	NA	NA	22705271	22699903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765
100201	chr9	+	4081	23	NNC	ENSMUSG00000033335.18	novel	3510	21	NA	NA	-6	2435	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	263.182151828961	1	119	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGGGCGTGGACCCTTTAA	5873	False	NA	NA	False	NA	NA	NA	21336234	21421490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382712_21383941_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21418718_21419687_21420225_21420410_21420548_21420644_21421285
100202	chr2	-	576	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11337	183	multi-exon	FALSE	non_canonical	0	0	junction_1	0	125	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426178	11413658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414015_11425958
100203	chr6	-	1366	8	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3880.06076640823	16	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1648	False	NA	NA	False	NA	NA	NA	7693173	7675168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7685168_7685407_7689251_7689513_7693108
100204	chr5	-	3117	18	NNC	ENSMUSG00000106864.4	novel	4718	18	NA	NA	20	231	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	161.442716977422	3	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTGTGAGTGGGTGT	NA	False	NA	NA	False	NA	NA	NA	31337441	31314556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316848_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
100205	chr19	+	5072	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	376	7	-26	-7	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	1	212	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAATGTCTCGTGGTGT	1443	False	NA	NA	False	NA	NA	NA	44282488	44295296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
100206	chr6	+	2098	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	45	-65	at_least_one_novel_splicesite	FALSE	canonical	3	354	junction_3	1978.73567938947	220	67	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACCATGATGAACCGATGC	NA	False	NA	NA	False	NA	NA	NA	122684571	122691527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690103
100207	chr1	-	2999	13	NIC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	2874	529	intron_retention	FALSE	canonical	3	2257	junction_9	167.448727641893	3	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCCCCAGATTGAGATGTA	NA	False	NA	NA	False	NA	NA	NA	20887610	20874380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466
100208	chr17	+	3606	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	587.414022964212	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	547	False	NA	NA	False	NA	NA	NA	56610447	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629208
100210	chr12	+	1763	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	2542.1680432261	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762979_24763078_24763500_24763843
100211	chr1	+	1346	6	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10403.2459665241	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACAATGGTGTCTCAAAG	NA	False	NA	NA	False	NA	NA	NA	86454447	86458415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456429_86456579_86456894_86456967_86457177_86457275_86457452_86457527_86457686
100212	chr6	-	2525	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_13	210.928584522333	2	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3045	False	NA	NA	False	NA	NA	NA	71885737	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
100213	chr11	-	6878	41	Antisense	novelGene_ENSMUSG00000020850.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.31224989991992	1	272	21	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCGCGTTCCCAACTCCA	NA	False	NA	NA	False	NA	NA	NA	75399692	75377654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75378016_75378448_75378596_75380580_75380732_75380822_75381043_75381154_75381368_75381466_75381597_75381676_75381777_75382266_75382457_75382581_75382703_75382783_75382981_75383089_75383207_75383319_75383457_75383803_75383933_75384174_75384372_75384637_75384841_75384956_75385139_75385269_75385379_75385497_75385691_75386057_75386250_75386408_75386650_75386861_75386998_75387197_75387382_75387793_75387904_75390622_75390887_75391004_75391157_75391339_75391458_75391579_75391759_75391891_75392026_75392155_75392281_75392590_75392744_75393317_75393514_75394094_75394333_75394440_75394570_75395301_75395412_75395499_75395667_75395919_75396113_75397153_75397394_75397487_75397632_75399103_75399239_75399344_75399481_75399587
100214	chr1	+	2475	10	NIC	ENSMUSG00000026020.10	novel	1713	13	NA	NA	-4	-1319	intron_retention	FALSE	canonical	3	171	junction_3	688.982843055392	6	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGGAAAGGTGAGTTGT	NA	False	NA	NA	False	NA	NA	NA	59724157	59744904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_59724386_59729644_59729722_59731495_59731549_59731770_59731888_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59743368_59743782_59743910_59744751
100215	chr16	-	500	1	Intergenic	novelGene_3817	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	53	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100216	chr12	-	1429	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	2	-14	-2	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	194	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
100217	chr4	+	3447	9	Fusion	ENSMUSG00000070605.5_ENSMUSG00000063245.12	novel	387	3	NA	NA	-106913	63717	multi-exon	TRUE	non_canonical	0	0	junction_1	26.4575131106459	1	82	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146426566	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146426722_146428065_146428160_146547914_146548020_146739308_146739414_146740256_146740384_146741834_146742489_146803869_146804369_146804452_146805693_146805866
100218	chr17	-	399	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4991	3	1456	-3	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	21	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45879206	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
100220	chr13	+	2026	6	NNC	ENSMUSG00000113626.2	novel	2239	3	NA	NA	33	190007	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	28.9316435758496	1	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGCTTGTGTGTGGACCA	NA	False	NA	NA	False	NA	NA	NA	61952112	62199496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61952220_62005782_62005910_62006094_62006156_62007517_62008663_62009370_62009867_62199406
100221	chr4	-	2535	9	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	8	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.180970754981	37	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994039	146912352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913192_146913779_146913997_146914501_146914505_146976212_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146991966_146992072_146993882
100223	chr11	+	473	1	Intergenic	novelGene_2500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTCGTCGGATGCCTGCA	NA	False	NA	NA	False	NA	NA	NA	108902471	108902944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902500_108902900
100224	chr4	-	1796	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	53	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	2545	False	NA	NA	False	NA	NA	NA	129229110	129203307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_129203674_129203816_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
100225	chr4	+	2656	10	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	-11	multi-exon	FALSE	non_canonical	0	0	junction_1	21.4631467093403	1	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTTTCAACAAGTTTG	924	False	NA	NA	False	NA	NA	NA	145237358	145351900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145239546_145239640_145241457_145241589_145314001_145314095_145319501_145319523_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
100226	chr13	-	3009	5	NNC	ENSMUSG00000074865.12	novel	2439	5	NA	NA	1	466	intron_retention	FALSE	non_canonical	0	0	junction_3	32.4152741774615	3	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGCCTTTTCTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	62706408	62664142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62670065_62670377_62706300
100227	chr5	+	373	1	Intergenic	novelGene_957	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	309	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197802	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
100228	chr9	+	927	9	Antisense	novelGene_ENSMUSG00000032116.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	18	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACTCAACCCTGACAGCAG	NA	False	NA	NA	False	NA	NA	NA	36660938	36678900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_36661030_36662477_36662645_36663626_36663732_36666100_36666192_36670016_36670114_36670491_36670617_36674624_36674694_36676349_36676475_36678843
100229	chr12	-	2705	3	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	2	-14	-2	intron_retention	FALSE	canonical	3	7560	junction_2	458	742	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595
100230	chr3	-	4394	1	Intergenic	novelGene_3126	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAACTCCAAAGACAATC	NA	False	NA	NA	False	NA	NA	NA	58508945	58504551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_58504600_58508900
100231	chr1	-	2140	17	NNC	ENSMUSG00000026037.15	novel	3561	18	NA	NA	-15	225	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	227.963538751266	1	77	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTTCTCTGGAGACTTCT	NA	False	NA	NA	False	NA	NA	NA	58544129	58503137	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58514014_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532801_58532910_58536534_58536625_58539399_58539537_58540481_58540586_58541000_58541044_58543930
100232	chr1	-	3971	2	Intergenic	novelGene_344	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	18	196	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGGTTTCCGTGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	16902346	16898330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_16898436_16898480
100233	chr8	-	1103	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	-72	-77	-72	77	mono-exon	FALSE	NA	NA	NA	NA	NA	12	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103592502	103591399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_103591400_103592500
100234	chr5	+	5258	2	ISM	ENSMUSG00000058558.13	ENSMUST00000140659.2	1024	3	-1686	-1929	307	974	intron_retention	FALSE	canonical	3	7486	junction_1	0	5	83	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAGAGAGGTATATTCAA	NA	False	NA	NA	False	NA	NA	NA	108050293	108057845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108052761_108055054
100236	chr5	+	286	1	Intergenic	novelGene_950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	54	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGGGTCCGCGCAGTCC	NA	False	NA	NA	False	NA	NA	NA	146197794	146198080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
100237	chr7	+	1303	8	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2434	-19449	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	15	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGGGAGGCAGACAGAGA	NA	False	NA	NA	False	NA	NA	NA	126394405	126396952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395926_126396025_126396078_126396505_126396720_126396814
100238	chrX	-	4473	10	NIC	ENSMUSG00000040363.16	novel	6941	15	NA	NA	-161	-10347	combination_of_known_junctions	FALSE	canonical	2	9	junction_9	40.187830600756	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGACCTGAGCCCAGTTCGGA	NA	False	NA	NA	False	NA	NA	NA	12026755	11913328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_11913353_11913661_11913988_11914541_11914887_11915233_11915492_11921207_11921395_11921877_11921932_11922582_11925430_11926368_11926448_11927760_11927886_12026527
100240	chrM	+	2183	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-359	0	359	mono-exon	FALSE	NA	NA	NA	NA	NA	9	38	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCCACCAAACCCTAAAAC	-4	True	NA	4	True	NA	NA	NA	11741	13924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13900
100241	chr1	+	1281	1	Intergenic	novelGene_402	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCAGAGTTGACATCA	2309	False	NA	NA	False	NA	NA	NA	87610124	87611405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_87610100_87611400
100242	chr7	-	3773	17	NIC	ENSMUSG00000035401.10	novel	7693	20	NA	NA	41	-707	combination_of_known_junctions	FALSE	canonical	3	11	junction_14	23.4626531694521	3	69	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGTACCTTGAAGCAAAAG	3780	False	NA	NA	False	NA	NA	NA	98305712	98243412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_98244520_98246239_98246392_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98288937_98289091_98290699_98290876_98297011_98297112_98303950_98304060_98305680
100243	chr6	-	1949	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	56	-4	56	4	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	143	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	16	True	NA	NA	False	NA	NA	NA	7693198	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
100245	chr7	+	490	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	97	522	-14	-63	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	15	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGATAAGCCCATCTCAAGGA	NA	False	NA	NA	False	NA	NA	NA	28050173	28052058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
100246	chr4	+	3206	6	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	3824	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	203.697226294321	2	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145401078	145431010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145401211_145422720_145422806_145425813_145425941_145427474_145428936_145429022_145429356_145429942
100247	chr1	-	2584	11	ISM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	671	5	671	-5	3prime_fragment	FALSE	canonical	2	4506	junction_7	660.625922894341	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTGGTTGTGTTACC	5126	False	NA	NA	False	NA	NA	NA	55126512	55116998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924
100248	chrX	-	1260	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	-188	-73	188	mono-exon	FALSE	NA	NA	NA	NA	NA	63	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79238531	79237271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237300_79238500
100249	chr15	+	1817	11	NNC	ENSMUSG00000046434.17	novel	3118	13	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	6026.32914467838	5	94	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	103148931	103153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150897_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152460_103152713
100250	chr17	-	1402	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	43	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAGCGCGAGCGAAGCCG	NA	False	NA	NA	False	NA	NA	NA	40158645	40157243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40157200_40158600
100251	chr19	-	654	2	Genic_Genomic	ENSMUSG00000062456.5	novel	714	1	NA	NA	1	-16	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	32443977	32443280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_-_32443442_32443484
100252	chrM	+	2094	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-1142	5	-1142	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	64	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	54	False	NA	-29	True	NA	NA	NA	1608	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1600_3700
100253	chr10	+	3023	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1898.57666343468	31509	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2199	False	NA	NA	False	NA	NA	NA	81012482	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015007_81015054_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
100254	chr5	-	649	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-83	1375	-83	-1375	mono-exon	FALSE	NA	NA	NA	NA	NA	5	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGCTGAAAGGAATGTGC	NA	False	NA	NA	False	NA	NA	NA	5833638	5832989	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5833000_5833600
100255	chr3	+	2385	17	NIC	ENSMUSG00000027751.14	novel	3700	26	NA	NA	5	366	intron_retention	FALSE	canonical	3	82	junction_1	129.07985658111	10	16	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGCCAAATGCCCAGTG	NA	False	NA	NA	False	NA	NA	NA	54600287	54622140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_54600316_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54620624_54621153_54621187_54622108
100256	chr16	-	564	1	Intergenic	novelGene_3690	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100257	chr5	+	1603	6	Intergenic	novelGene_875	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	17	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGACAGGGTTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	142888871	142954662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_142889140_142889216_142889697_142889821_142890001_142890095_142890540_142890993_142891202_142954638
100258	chrM	+	784	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-103	0	-103	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	47	False	NA	NA	False	NA	NA	NA	7823	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
100259	chr6	+	2969	1	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	70200	246	17721	-246	mono-exon	FALSE	NA	NA	NA	NA	NA	10	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAAAATGGTAATTAGTA	NA	False	NA	-80	True	NA	NA	NA	71956244	71959213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_71956200_71959200
100260	chr7	+	1476	7	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3121.80432157786	6	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46497035	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501317_46501419_46503406_46503531_46504400
100261	chr11	+	5181	3	Intergenic	novelGene_2300	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	273	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57433758	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57433770_57445660_57450433_57450525
100263	chr11	-	1816	7	NIC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	1611	-4	intron_retention	FALSE	canonical	3	2224	junction_3	262.339898266013	5	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGTCTGAACCTTGTTC	NA	False	NA	NA	False	NA	NA	NA	5825153	5822191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824885_5825053
100264	chr7	-	1796	11	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	292	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	9010.55944378594	2	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGAGTCTGTTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	126398916	126394412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216_126398479_126398829
100265	chr11	-	2671	11	NIC	ENSMUSG00000020534.15	novel	2858	12	NA	NA	-84	0	combination_of_known_splicesites	FALSE	canonical	1	23	junction_10	346.441928755744	1	70	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	NA	False	NA	NA	NA	60702001	60678929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60701729
100266	chr11	-	5295	2	Intergenic	novelGene_2298	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	1	10	junction_1	0	12	122	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCAGCAAGACCCGTTTC	NA	False	NA	NA	False	NA	NA	NA	57450923	57433751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433948_57445824
100267	chr4	-	4569	3	ISM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	63	17303	-58	421	5prime_fragment	FALSE	canonical	3	1040	junction_2	67.5	28	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGCCCTAAACTGAAATC	2555	False	NA	NA	False	NA	NA	NA	129229100	129218195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_129222527_129228289_129228438_129229010
100268	chr16	-	564	1	Intergenic	novelGene_3691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100269	chrM	+	837	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-160	4	-160	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGACCCACCAAACTCA	-10	True	NA	NA	False	NA	NA	NA	7766	8603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8600
100270	chr4	+	2359	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14315	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	40.5490101262931	2	96	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145158994	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145160315_145160385_145173287_145173342_145176036
100271	chr17	+	1272	1	Intergenic	novelGene_229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCGGTCTCTCGGTCCCT	NA	False	NA	NA	False	NA	NA	NA	40154396	40155668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154400_40155700
100272	chr9	+	2318	13	NIC	ENSMUSG00000056267.15	novel	2120	16	NA	NA	0	584	intron_retention	FALSE	canonical	2	7	junction_3	76.6518101547511	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAAATCTTAGGTGAGAT	NA	False	NA	NA	False	NA	NA	NA	99125505	99180622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_99125544_99128319_99128420_99136307_99136431_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631
100273	chr4	+	2523	3	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	29.5	4	53	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147637738	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646968_147667343
100274	chr4	-	2166	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-11	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	97.1320750318863	1	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	9512	False	NA	NA	False	NA	NA	NA	147894256	147838433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147839310_147839813_147840693_147842158_147842286_147845677_147845736_147891546_147891641_147894124
100275	chr18	-	3992	2	Genic_Genomic	ENSMUSG00000073647.5	novel	619	1	NA	NA	-370	3144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATTACTATCATCATTTT	26	False	NA	NA	False	NA	NA	NA	4199308	4195175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_-_4198787_4198927
100276	chr3	+	3801	27	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	30	-8	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	167.913386379537	4	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGCAGTCGTGGTGTC	NA	False	NA	NA	False	NA	NA	NA	54600312	54636175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600390_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624058_54625067_54625654_54625813_54627826_54627883_54629974_54630062_54633390_54633497_54634989_54635118_54635764
100277	chr4	-	3791	17	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	1395	0	intron_retention	FALSE	canonical	0	0	junction_11	125.951612112549	12	136	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	2945	False	NA	NA	False	NA	NA	NA	41121359	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41118254_41118417_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119751_41119877_41120006_41120185_41120273_41120434_41120723_41120783_41121006_41121128_41121210
100278	chr6	-	1696	6	NNC	ENSMUSG00000030057.16	novel	952	6	NA	NA	52	907	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4141.94084940864	28	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGGCCGGAGCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	87827952	87818689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
100279	chr6	-	2646	16	Antisense	novelGene_ENSMUSG00000034269.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	102	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGCGGCGCCACGGCGTTT	NA	False	NA	NA	False	NA	NA	NA	113098680	113054591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113054672_113081893_113082083_113086384_113086575_113086842_113086952_113087334_113087480_113087824_113087882_113088314_113088496_113091802_113092055_113092492_113092638_113092965_113093089_113093745_113093848_113094326_113094577_113095216_113095305_113096375_113096636_113097799_113098121_113098526
100280	chr12	-	4611	2	Intergenic	novelGene_4398	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10818	144	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCCTTTCTTTTCTCACA	NA	False	NA	NA	False	NA	NA	NA	68610270	68605549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_68609877_68609986
100281	chr11	-	799	2	NNC	ENSMUSG00000058546.9	novel	588	4	NA	NA	134	-5	intron_retention	FALSE	canonical	0	0	junction_1	0	11	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAATGCTGCTTGTCA	6604	False	NA	-33	True	NA	NA	NA	78073769	78071765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_78072420_78073624
100282	chr13	+	643	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	274	21	274	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	3	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	8236	False	NA	NA	False	NA	NA	NA	74554801	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554800_74555400
100283	chr9	+	1861	9	Antisense	novelGene_ENSMUSG00000032198.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATGGAGAGACACACGGG	9253	False	NA	NA	False	NA	NA	NA	21732893	21743978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_21732921_21733028_21733142_21735688_21735833_21736730_21736829_21737080_21737171_21741508_21741674_21742328_21742491_21742707_21742937_21743145
100284	chr15	+	3015	10	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	55	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	279.670043682432	2	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTAATGTTGCAGTTT	NA	False	NA	-39	True	NA	NA	NA	101982353	102005606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992773_101998340_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
100285	chr4	+	2465	2	ISM	ENSMUSG00000045071.15	ENSMUST00000052420.7	3205	3	64394	-2	-552	2	3prime_fragment	FALSE	canonical	2	5	junction_1	0	3	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCATTTTTACTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	59690636	59721403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_59691339_59719640
100286	chr5	-	2067	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-30	-96	-30	96	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833585	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
100287	chr11	-	3366	2	Intergenic	novelGene_2360	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	102	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACACATCAGAGCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	57450923	57447507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450369_57450418
100288	chr13	+	3082	4	FSM	ENSMUSG00000074867.5	ENSMUST00000099449.4	2571	4	2	-513	2	513	multi-exon	FALSE	canonical	3	81	junction_1	97.7422915403335	1	119	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTAAGCTTGTGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	62277731	62321746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963
100289	chrX	+	4616	5	Antisense	novelGene_ENSMUSG00000083923.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	122	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGATTCATGTAA	NA	False	NA	NA	False	NA	NA	NA	88144374	88351000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_88144511_88144557_88144902_88344439_88345012_88345065_88345210_88347580
100290	chr6	-	2564	11	NIC	ENSMUSG00000030268.18	novel	7833	11	NA	NA	-77	5	combination_of_known_junctions	FALSE	canonical	3	210	junction_10	1167.49801284627	35	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	NA	False	NA	NA	False	NA	NA	NA	144993464	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144993165
100291	chr15	+	3556	17	ISM	ENSMUSG00000022364.15	ENSMUST00000110175.9	3468	18	-2	-1	-2	1	intron_retention	FALSE	canonical	3	200	junction_2	25.2003689209107	73	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTCTGCATGTAATTGA	NA	False	NA	NA	False	NA	NA	NA	57775627	57822799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732
100292	chr1	+	3239	13	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	12	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	101.662124215462	1	62	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAACCACAAGTATAC	NA	False	NA	NA	False	NA	NA	NA	132405155	132433389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417455_132420329_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
100293	chr8	-	976	3	FSM	ENSMUSG00000031633.5	ENSMUST00000155986.2	1275	3	0	299	0	-299	multi-exon	FALSE	canonical	3	7715	junction_1	86	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTAATTTCTCCTTTAG	NA	False	NA	NA	False	NA	NA	NA	46664067	46661305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46661576_46662058_46662546_46663848
100294	chr3	-	1727	13	NNC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	-35806	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	369.04210652565	53	5	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAAGCCTCTTGCGTGT	NA	False	NA	NA	False	NA	NA	NA	104761685	104702154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708011_104761668
100295	chr10	+	3070	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	4	15	-4	multi-exon	FALSE	canonical	3	5618	junction_10	706.418033369635	1	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	2196	False	NA	NA	False	NA	NA	NA	81012479	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
100296	chr17	-	2399	10	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	1358	18	-331	-18	3prime_fragment	FALSE	canonical	3	9221	junction_4	1036.97658818531	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45882839	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
100297	chr11	-	850	10	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	0	888	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6479.01620523165	1	18	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCCAAGTTCATTAATTAT	NA	False	NA	NA	False	NA	NA	NA	33113076	33104038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33104048_33106023_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
100298	chr4	+	3417	9	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-50	182150	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	136.84183388131	18	37	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146586433	146806002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146616529_146616611_146619877_146620005_146802050_146802575_146802658_146803259_146803763_146804172_146804673
100299	chr18	-	5736	37	NNC	ENSMUSG00000047879.18	novel	4726	16	NA	NA	19	34894	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	440.408216745037	32	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCACTGCGGCGCCCAGTG	33	True	NA	NA	False	NA	NA	NA	10030048	9958171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_9958246_9959096_9959170_9959252_9959316_9960485_9960553_9962372_9962492_9963262_9963311_9963821_9963917_9968748_9968832_9970252_9970328_9975597_9975706_9977844_9977977_9984431_9984533_9986286_9986354_9986550_9986602_9986688_9986760_9987067_9987166_9987598_9987662_9989687_9989775_9992127_9992276_9992831_9992908_9993320_9995730_9996070_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
100300	chrX	+	1303	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-68	-25	68	mono-exon	FALSE	NA	NA	NA	NA	NA	3819	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
100302	chr7	+	705	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	45	1	0	1	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTATTGGTGTGCCTCTGT	1309	False	NA	NA	False	NA	NA	NA	3707036	3709895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
100303	chr16	+	3788	9	NIC	ENSMUSG00000053062.17	novel	4370	10	NA	NA	64	-6	intron_retention	FALSE	canonical	3	3297	junction_8	380.775503906173	2	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAAAGTGAAATGTCTGGT	NA	False	NA	NA	False	NA	NA	NA	84571074	84619912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84615664_84618147_84618191_84619674
100304	chr7	+	464	3	ISM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	666	-19	354	0	3prime_fragment	FALSE	canonical	3	14983	junction_1	18	1	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAGAATTGATACTTG	1989	False	NA	NA	False	NA	NA	NA	3707716	3709875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_3707768_3708731_3708919_3709649
100305	chr19	-	3239	4	Antisense	novelGene_ENSMUSG00000065380.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	34	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAAGTTCCTTGGAGTC	NA	False	NA	NA	False	NA	NA	NA	33933194	33740268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_33743077_33744230_33744399_33821700_33821754_33932984
100306	chr11	+	1284	11	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	13	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAAGGACGCGGGCTCT	NA	False	NA	NA	False	NA	NA	NA	33102509	33113072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103981_33104060_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
100307	chr7	+	2199	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	-27	5	2	-5	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	1	105	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAGGAGGTTTTTTTTTT	626	False	NA	NA	False	NA	NA	NA	4743156	4750508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
100308	chr2	-	3119	16	ISM	ENSMUSG00000027185.16	ENSMUST00000133016.8	4543	27	21463	-2	3579	-2	3prime_fragment	FALSE	canonical	3	322	junction_9	21.2263986582746	3	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGCCTGCAGTGCCTAT	NA	False	NA	NA	False	NA	NA	NA	103570123	103551602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103565336_103570097
100309	chr11	+	3275	12	NIC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	53545	-22	intron_retention	FALSE	canonical	3	621	junction_3	61.5147633962976	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGGTTAAAAAAAAAAAAGGA	3262	False	NA	NA	False	NA	NA	NA	6296149	6306556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
100310	chr9	+	5005	2	Intergenic	novelGene_1016	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	116	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGATTTCAGTGTTAGTG	NA	False	NA	NA	False	NA	NA	NA	38321031	38330855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_38324380_38329198
100311	chr17	-	1136	3	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5086.5	47	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36149124	36145696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146554_36147585_36147629_36148888
100312	chr11	-	5211	27	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-7010	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	329.588826234595	8	80	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGATAACTTTTCTGATA	7659	False	NA	82	True	NA	NA	NA	106153915	106139972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106140163_106140211_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586_106147038_106147670_106147744_106151676_106153133_106153227_106153516_106153618_106153708_106153832
100313	chr15	-	2511	18	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	118	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGAGGCGCCACCCACGC	NA	False	NA	NA	False	NA	NA	NA	12883319	12824966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12825025_12826150_12826253_12827311_12827378_12833913_12834268_12834361_12834741_12837363_12837455_12842137_12842254_12842385_12842624_12846159_12846289_12848135_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865183_12866646_12866791_12878749_12878913_12881707_12881823_12883246
100314	chr16	-	564	1	Intergenic	novelGene_3692	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100315	chr11	+	1714	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-53	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1431.62169845948	2	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5353	False	NA	NA	False	NA	NA	NA	52251908	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265226_52267217_52267371_52267474_52267528_52274676_52274738_52274799_52274905_52276409_52276561_52278242_52278301_52279258
100316	chr5	+	794	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	1232	-22	-60	5prime_fragment	FALSE	canonical	3	7201	junction_3	5858.17585942928	2	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATCAATGGGTACAAGCGC	NA	False	NA	NA	False	NA	NA	NA	115697573	115700554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484
100317	chr6	+	5392	5	NNC	ENSMUSG00000038538.18	novel	5521	5	NA	NA	-597	3700	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	30.6675724503913	1	74	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTCCCAAAGCAGATCTA	NA	False	NA	NA	False	NA	NA	NA	38467341	38483214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_38468867_38475622_38475855_38476121_38476212_38479172_38481156_38481652
100318	chr15	-	3073	10	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	109	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCAGAATCCCGATTTCT	3538	False	NA	NA	False	NA	NA	NA	102005595	101994988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101995075_101997050_101997183_101997289_101997469_101998304_101998529_101999835_101999928_102001418_102001633_102002090_102002147_102003104_102003213_102003410_102003483_102003685
100319	chr16	+	1430	6	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGTGGTGTATAAGCT	5637	False	NA	NA	False	NA	NA	NA	22064648	22071483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065615_22065937_22066016_22067187_22067248_22067801_22067886_22069615_22069730_22071355
100320	chr2	-	4489	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	-12	2800	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	299.067810965265	6	105	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177482141	177470783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177474890_177475960_177476105_177476312_177476440_177482029
100321	chr5	-	1434	4	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	357	-2	intron_retention	FALSE	canonical	0	0	junction_1	1923.94756223298	1	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	4018	False	NA	NA	False	NA	NA	NA	142891219	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889434_142889798_142890004_142890098_142890538_142890991
100322	chr12	+	2131	7	Antisense	novelGene_ENSMUSG00000061477.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGGCTCTCGCGAGAACG	4354	False	NA	NA	False	NA	NA	NA	28679603	28685880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_28681191_28681620_28681774_28683766_28683832_28684207_28684351_28685413_28685486_28685577_28685662_28685853
100323	chr4	+	3595	7	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159937	182154	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	175.200837136508	45	77	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGACTTGGCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	146426546	146806006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146797295_146797381_146800390_146800518_146802050_146802594_146803012_146804243_146804657
100324	chr11	-	1713	6	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	12	-5	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	1344.78616887593	1	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGGGATTGTGTGGTC	NA	False	NA	NA	False	NA	NA	NA	120472438	120468939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120470125_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
100325	chr10	+	3070	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	4	15	-4	multi-exon	FALSE	canonical	3	5618	junction_10	706.418033369635	52	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	2196	False	NA	NA	False	NA	NA	NA	81012479	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
100326	chr12	-	1345	9	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	25219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3371.13988279558	26	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTTTTAAACATTGGTGA	NA	False	NA	NA	False	NA	NA	NA	111638734	111610575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111610586_111635796_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638296_111638408_111638663
100327	chr7	+	2194	4	Antisense	novelGene_ENSMUSG00000065219.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	49	46	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCGACCCCACACCGCCC	NA	False	NA	NA	False	NA	NA	NA	44775348	44778083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_44775459_44775539_44775662_44775901_44776704_44776923
100328	chr4	+	2330	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	12	0	multi-exon	FALSE	non_canonical	0	0	junction_1	73.2731874562585	3	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	4122	False	NA	NA	False	NA	NA	NA	147314752	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147393100_147393181_147409230_147409335_147413438_147413566_147415724_147416217_147416804
100329	chr2	+	2637	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	179	8	179	-8	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	121	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGGACTGGGGTCATTC	NA	False	NA	NA	False	NA	NA	NA	29952043	29962581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
100330	chr12	+	615	1	Intergenic	novelGene_4445	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	47	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTTTAAGTTCTTACCA	2114	False	NA	NA	False	NA	NA	NA	99611319	99611934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_99611300_99611900
100331	chrM	+	2587	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	30	-1035	30	1035	mono-exon	FALSE	NA	NA	NA	NA	NA	5	79	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	8	False	NA	-41	True	NA	NA	NA	1123	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3700
100332	chr17	+	9348	1	NIC	ENSMUSG00000024019.19	novel	6380	24	NA	NA	-286	112	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	29	125	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCCAAAGGCTTATCAA	NA	False	NA	NA	False	NA	NA	NA	29913097	29922445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29913100_29922400
100333	chr6	-	1653	8	FSM	ENSMUSG00000029922.16	ENSMUST00000114823.8	2992	8	121	1218	102	121	multi-exon	FALSE	canonical	3	27	junction_7	1191.73940789358	7	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTAGTTTTTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	39396589	39375955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396400
100334	chr15	+	3798	16	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	72	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	341.830848357618	1	79	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAAGTTGATGGTTAATG	NA	False	NA	-22	True	NA	NA	NA	101982370	102005597	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101983761_101983910_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003441_102003485_102003687
100335	chr4	+	2189	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	1	multi-exon	FALSE	non_canonical	0	0	junction_1	46.8301315873637	6	25	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147216501	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147447267_147447362_147536170_147536264_147661528_147661587_147665698_147665826_147667290_147667445_147668275
100337	chr1	+	2261	8	Genic_Genomic	ENSMUSG00000097680.2	novel	2782	3	NA	NA	5017	-8038	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	19	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGGAAGAAATCTAAGCGG	NA	False	NA	NA	False	NA	NA	NA	135181315	135186143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_+_135182123_135182665_135182859_135183712_135183830_135183971_135184058_135184201_135184329_135184516_135184613_135184742_135185520_135186085
100338	chr4	+	2115	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5_ENSMUSG00000066007.16	novel	4244	5	NA	NA	17	-1902	multi-exon	TRUE	non_canonical	0	0	junction_1	40.0169885798519	5	27	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146093410	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093419_146206922_146207223_146207708_146207846_146368115_146368128_146388486_146388614_146390758_146390843_146391798_146392337_146392757_146393429_146552609
100339	chr11	-	1592	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	71	330	40	-330	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	1	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915259	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
100340	chr11	-	1812	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	46	9	46	-4	multi-exon	FALSE	canonical	3	3168	junction_5	160.793780974265	1	76	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGGGATTGTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	120472404	120468938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
100341	chr5	+	956	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	261	-12	14	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	76	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	121342596	121347043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
100342	chr4	+	3162	17	NNC	ENSMUSG00000028587.19	novel	670	3	NA	NA	2932	-2	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	149.118228576355	7	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTGGTATGGTTTGGG	8204	False	NA	NA	False	NA	NA	NA	108439582	108472028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_108439855_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
100343	chr18	-	3454	29	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	487.199054152763	1	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCCATGTTATTTATTT	NA	False	NA	NA	False	NA	NA	NA	42395194	42335410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375096_42377883_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
100346	chr4	+	3031	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	7	182333	multi-exon	FALSE	non_canonical	0	0	junction_2	62.1932472218649	1	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216568_147216646_147216818_147316807_147316905_147393104_147393194_147409202_147409335_147413438_147413566_147415724_147415863_147416194_147418088_147600206
100347	chr3	+	627	5	NNC	ENSMUSG00000041355.14	novel	1189	5	NA	NA	208	75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1993.34685579304	2	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTCAACCAGAATGCGAG	3828	False	NA	NA	False	NA	NA	NA	88487185	88495415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494220_88495200
100348	chr7	+	1254	7	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3021.28082202823	3	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495264	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500314_46503451_46503531_46504400
100350	chr16	+	519	1	Intergenic	novelGene_3811	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211520	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
100351	chr8	-	4088	10	NNC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-2	4	intron_retention	FALSE	non_canonical	0	0	junction_1	104.645433090349	21	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGCGATATTGTATTTCT	NA	False	NA	NA	False	NA	NA	NA	106578635	106571300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_106572282_106572617_106573024_106573279_106573433_106573615_106575532_106575644_106575688_106575818_106576033_106576118_106576182_106576257_106576346_106576464_106576556_106578502
100352	chr10	-	5115	2	Intergenic	novelGene_3473	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	148	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	74555798	74550610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74552655_74552727
100353	chrX	+	2448	8	NNC	ENSMUSG00000031303.9	novel	4348	29	NA	NA	133782	6882	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	91	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGTAGTAGAGGAGGAAG	3537	False	NA	NA	False	NA	NA	NA	158905210	158913229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158906943_158907513_158907626_158909192_158909257_158910285_158910356_158910565_158910730_158911468_158911548_158912401_158912511_158913111
100354	chr19	+	1726	3	ISM	ENSMUSG00000071644.11	ENSMUST00000135025.2	1272	5	3725	297	3725	-297	3prime_fragment	FALSE	canonical	3	9508	junction_2	178.5	33	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCTGTCCTGCCTCC	1415	False	NA	NA	False	NA	NA	NA	8953492	8955546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_8954855_8954948_8955074_8955307
100355	chrX	+	1306	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-30	-66	-30	66	mono-exon	FALSE	NA	NA	NA	NA	NA	4	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068779	13070085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
100356	chr10	+	7943	25	NNC	ENSMUSG00000037876.18	novel	8377	26	NA	NA	-27701	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	43.984826139881	143	96	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCTGGATGTTACAGTT	NA	False	NA	NA	False	NA	NA	NA	66993825	67092095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_66993851_67025514_67025629_67051048_67051155_67052761_67052820_67053831_67053938_67054077_67054249_67054732_67056415_67059787_67059961_67060515_67062699_67065626_67065829_67067750_67067966_67069149_67069303_67073886_67073977_67074585_67074714_67075027_67075239_67075640_67075856_67076441_67076721_67079550_67079720_67080561_67080653_67081284_67081416_67081812_67081936_67083789_67083930_67085408_67085586_67090230_67090363_67091226
100357	chrX	-	2636	21	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	17	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCACCTGTGGAGAAACAGA	NA	False	NA	NA	False	NA	NA	NA	20548693	20536447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545833_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
100358	chr11	-	929	1	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCAGCCTCTGCTGGTCA	NA	False	NA	NA	False	NA	NA	NA	62444033	62443104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62443100_62444000
100360	chr2	-	2911	7	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5539	1732	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	477.901896022837	6	40	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTATGTTTCTGTCTGTCC	NA	False	NA	NA	False	NA	NA	NA	177275542	177259264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177259751_177259798_177261258_177261509_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177275396
100361	chr7	-	360	4	FSM	ENSMUSG00000061787.16	ENSMUST00000134425.8	660	4	306	-6	296	-1	multi-exon	FALSE	canonical	3	12924	junction_1	185.347121789241	13	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGTCTGTATTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	80994676	80992481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604
100362	chr4	+	2359	6	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	1575	3	NA	NA	-14231	783	multi-exon	FALSE	non_canonical	0	0	junction_3	17.7087548969429	3	49	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTTGTTTTCAACTTGC	NA	False	NA	NA	False	NA	NA	NA	145159078	145178241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145173065_145173192_145173286_145173340_145176036_145176318_145176484
100363	chr3	+	3521	19	NNC	ENSMUSG00000068823.11	novel	3849	19	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	5465.01221379363	1	91	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTGCTGCTTAGATCAC	NA	False	NA	NA	False	NA	NA	NA	102927935	102965017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960238_102961975_102962150_102962664_102962785_102963626_102963794_102964201
100365	chr11	-	3232	17	NNC	ENSMUSG00000040667.12	novel	2389	17	NA	NA	0	-8	intron_retention	FALSE	canonical	1	8	junction_8	285.847615653865	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATTCAAAAATTTGACT	NA	False	NA	NA	False	NA	NA	NA	70860785	70833915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840098_70840369_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
100366	chr4	+	1915	3	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14303	768	multi-exon	TRUE	non_canonical	0	0	junction_2	29.5	6	35	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145159006	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036_145176840_145177259
100367	chr2	-	1072	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	103	-175	103	175	mono-exon	FALSE	NA	NA	NA	NA	NA	2	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824518	28823446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824500
100370	chr4	+	2294	8	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078498.6	novel	454	2	NA	NA	-21	182326	multi-exon	TRUE	non_canonical	0	0	junction_2	174.731397363181	1	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACAAGGTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147209691	147600517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147316807_147316901_147318796_147318855_147413438_147413566_147415724_147415863_147416278_147417038_147417372_147418091_147600209
100371	chr8	-	1352	1	Intergenic	novelGene_1711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGCTTGTTTTGCTCCCAT	NA	False	NA	NA	False	NA	NA	NA	96485749	96484397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_96484400_96485700
100372	chr1	+	3745	1	Intergenic	novelGene_330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	125	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGAGGCAGCTCCACCCTA	6192	False	NA	NA	False	NA	NA	NA	7196509	7200254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_7196500_7200300
100373	chr5	-	2897	2	Antisense	novelGene_ENSMUSG00000060961.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	89356504	89351754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_89352095_89353947
100374	chr6	+	2862	9	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	36	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCAGAAGAAGCCTGTGC	677	False	NA	NA	False	NA	NA	NA	122294856	122302751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298827_122299043_122299283_122299431_122299965_122300777_122302418
100375	chr13	-	1726	4	NNC	ENSMUSG00000113623.2	novel	633	4	NA	NA	-10	51483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	67.1532244613433	4	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAGAGAGAGAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	62564867	62498823	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62500246_62555228_62555290_62555482_62555610_62564751
100377	chr17	-	2304	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	6	-21	intron_retention	FALSE	non_canonical	0	0	junction_1	4030.47418410791	8	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGATGCAGTTTTATA	NA	False	NA	NA	False	NA	NA	NA	45884191	45878721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878930_45879179_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881289_45881331_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
100378	chr4	+	4988	3	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-27058	107	intron_retention	FALSE	canonical	1	1	junction_1	20.5	8	83	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTGCTTCGAGTATTC	9789	False	NA	NA	False	NA	NA	NA	145524748	145556619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145524827_145541336_145541406_145551778
100379	chr18	+	1743	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	0	4	0	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	86	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	48179713	48181456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
100380	chr9	-	1476	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	-2	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5071.87617050031	3	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAGTTTAATGAGAAA	8134	False	NA	-46	True	NA	NA	NA	78387972	78385754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78385994_78386302_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
100381	chrM	-	1297	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1223	-5	1223	mono-exon	FALSE	NA	NA	NA	NA	NA	27	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGTAGGAGTCAAAAACTT	9245	False	NA	NA	False	NA	NA	NA	6943	5646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5600_6900
100382	chr1	-	2364	14	Antisense	novelGene_ENSMUSG00000026496.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAGTCCTCACACACAACT	NA	False	NA	NA	False	NA	NA	NA	180428791	180415560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180415723_180415920_180415990_180416211_180416346_180416960_180417157_180418780_180418910_180420410_180420494_180421603_180421728_180422216_180422347_180424852_180424954_180425775_180425928_180426516_180426646_180427157_180427218_180427658_180427781_180428018
100383	chrX	-	5045	14	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-10092	303	intron_retention	FALSE	non_canonical	0	0	junction_8	196.940894626615	1	73	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	NA	NA	NA	72171400	72151711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72161360_72166214_72166320_72166671_72166740_72167032_72167132_72167299_72167368_72168420_72168588_72170422
100384	chr5	+	971	5	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	1274	212	1118	-212	3prime_fragment	FALSE	canonical	3	6763	junction_4	4510.81835008904	4	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115698799	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
100385	chrM	+	1018	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	-58	-3	-58	3	mono-exon	FALSE	NA	NA	NA	NA	NA	20	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	269	False	NA	51	True	NA	NA	NA	2692	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2700_3700
100386	chr2	+	2336	4	NIC	ENSMUSG00000026926.15	novel	1638	11	NA	NA	262	-108	intron_retention	FALSE	canonical	3	1351	junction_1	113.28136063213	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGGGCTGTCTGTCTGT	2494	False	NA	NA	False	NA	NA	NA	26281200	26283845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_26283011_26283097_26283217_26283308_26283400_26283529
100387	chr4	+	3272	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5_ENSMUSG00000066007.16	novel	4244	5	NA	NA	18	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	37.1441240361544	52	45	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146093411	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093469_146207051_146207223_146207708_146207846_146291416_146291510_146293441_146293573_146368115_146368209_146384292_146384431_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393458_146552638
100388	chr10	+	2451	4	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	120	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGCCTGCCGGTTTTTTT	3586	False	NA	NA	False	NA	NA	NA	62675907	62728637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62676160_62700587_62700639_62713928_62715913_62728473
100389	chr4	+	2300	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-31312	2580	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	139.87651697122	5	72	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTGCTTTGGTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	147545561	147600523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147545711_147592042_147592098_147595209_147595337_147596801_147597856_147599453_147599868_147600022
100390	chr7	+	1708	8	NIC	ENSMUSG00000063229.16	novel	912	6	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	2903.73895492817	25	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46490877	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_46491077_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
100391	chr18	-	999	2	Intergenic	novelGene_4491	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	19	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGGCAACGCTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	6554138	6553073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_6553207_6553272
100392	chr4	+	3752	10	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	11	182159	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	130.374673750524	13	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146586494	146806011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146613823_146613960_146616526_146616611_146619877_146620005_146802050_146802617_146802784_146803682_146803852_146804170_146804673
100393	chr2	+	3913	4	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	25	2548	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	82.9671956592216	1	114	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177190032	177204104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177199035_177199097_177200246_177200842_177200925
100395	chr1	+	4009	25	NNC	ENSMUSG00000056211.14	novel	4795	27	NA	NA	19	-658	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_8	67.1256595250033	2	45	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGCAAATTATTCTTCAAA	NA	False	NA	NA	False	NA	NA	NA	128031086	128164814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_128031221_128079480_128079690_128080925_128081137_128095629_128095745_128096715_128096795_128102685_128102746_128102828_128102970_128104560_128104694_128106619_128106729_128106823_128106920_128109453_128109492_128109574_128109626_128109722_128109950_128112136_128112392_128114494_128114647_128121196_128121494_128124710_128124835_128138941_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
100396	chr2	-	3872	10	Fusion	ENSMUSG00000078905.9_ENSMUSG00000078897.11_ENSMUSG00000078903.11	novel	1659	5	NA	NA	-12	1245	multi-exon	TRUE	non_canonical	0	0	junction_1	1.88561808316413	7	72	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	175277612	174902096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_174903262_174903344_174903557_175037099_175037275_175037360_175038020_175070604_175071470_175145885_175146023_175166507_175166784_175265264_175265399_175266821_175266949_175277490
100397	chr16	+	3064	9	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	1	-7	intron_retention	FALSE	canonical	3	7	junction_8	638.042465279545	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTTATATAGGTGGTCT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930566
100398	chr11	+	1046	9	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1207.491970729	2	30	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAACACATTGTGTGACT	NA	False	NA	NA	False	NA	NA	NA	9068626	9086160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068653_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084888_9085190_9085311_9085960
100399	chr3	+	5426	11	NNC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	1	202	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	242.242626306767	5	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	NA	False	NA	NA	False	NA	NA	NA	41510166	41568695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41549452_41549561_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
100400	chrM	-	1240	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	18	15	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGTTTGTCATAGAAGTG	-66	True	NA	NA	False	NA	NA	NA	11544	10304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10300_11500
100401	chr5	-	2128	2	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	260	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125465105_125466760
100402	chr4	+	2469	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	8	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	35	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216502	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216737_147314798_147314885_147534439_147534577_147578832_147578878_147596788_147596997_147597081_147597092_147599102_147599371_147668174
100403	chr18	+	1074	8	NNC	ENSMUSG00000025428.16	novel	2471	12	NA	NA	4	-143	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1966.27439071759	114	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTAGTTTGTGTGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	77861695	77870212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866256_77868684_77868793_77868911_77869057_77869498_77869650_77870000
100404	chr14	+	2447	14	Antisense	novelGene_ENSMUSG00000040472.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGAAAGAGATGTCAATCACA	NA	False	NA	NA	False	NA	NA	NA	55953332	55959361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_+_55953995_55954623_55954711_55954958_55955074_55955901_55956018_55956117_55956208_55956319_55956407_55956544_55956595_55956690_55957169_55957262_55957339_55957762_55957966_55958234_55958422_55958593_55958720_55959053_55959163_55959300
100405	chr17	-	778	3	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4302	18	767	-18	3prime_fragment	FALSE	canonical	3	10930	junction_2	637.5	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	-82	True	NA	NA	NA	45879895	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783
100406	chrM	+	2059	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-235	0	235	mono-exon	FALSE	NA	NA	NA	NA	NA	4	72	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAAAATTAATCAGTTAG	-4	True	NA	4	True	NA	NA	NA	11741	13800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13800
100407	chr3	+	4662	2	Intergenic	novelGene_3119	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	94	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTACAGGCTTTCATCCATG	NA	False	NA	NA	False	NA	NA	NA	49556671	49687094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_49557333_49683093
100409	chr4	+	3299	4	Intergenic	novelGene_2087	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_3	49.4031038161234	1	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATTGAACAAAAGTCCTA	NA	False	NA	NA	False	NA	NA	NA	146384326	146394162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146384431_146388486_146388614_146390758_146391379_146391714
100410	chr4	+	2649	11	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	5	182330	multi-exon	FALSE	non_canonical	0	0	junction_1	151.865203387741	14	18	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147216499	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316905_147393104_147393194_147406112_147406181_147409277_147409335_147413438_147413566_147415724_147415863_147416444_147416754_147416922_147418091_147600209
100411	chr2	+	3211	5	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	28	802	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	44.2965856472031	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAGTGGCACCATCTGAAG	NA	False	NA	NA	False	NA	NA	NA	177156553	177170724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177156642_177165078_177165206_177165410_177165472_177166618_177166942_177168112
100412	chr7	+	1773	13	NNC	ENSMUSG00000030884.13	novel	1896	14	NA	NA	8	-50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	486.250964009327	2	84	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAACAGCCTGGATTTT	NA	False	NA	NA	False	NA	NA	NA	120234470	120258697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_120234546_120236884_120236969_120237070_120237242_120240856_120240959_120242248_120242364_120244365_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
100413	chr4	+	1971	6	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	628	4	NA	NA	-50745	-8	multi-exon	FALSE	non_canonical	0	0	junction_3	44.1298085198656	2	22	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAAGTTTGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	147395014	147669647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147395147_147447267_147447362_147536170_147536179_147665698_147665826_147667290_147667445_147668191
100414	chr4	+	2620	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-13	-1876	multi-exon	TRUE	non_canonical	0	0	junction_1	40.0169885798519	6	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206928	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146291416_146291510_146365127_146365249_146388486_146388614_146390758_146390897_146391562_146392323_146392742_146393429_146552609
100415	chr5	-	3588	20	Fusion	ENSMUSG00000106864.4_ENSMUSG00000106717.2	novel	4200	21	NA	NA	-25561	199	intron_retention	FALSE	non_canonical	0	0	junction_18	207.733355083878	196	23	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCTAAGTAAAGGTACT	NA	False	NA	NA	False	NA	NA	NA	31397220	31314588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31331434_31331575_31331835_31367717_31367811_31397156
100416	chr14	-	716	6	Antisense	novelGene_ENSMUSG00000065147.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	10	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGGGGGAGGGGGGAGCG	NA	False	NA	NA	False	NA	NA	NA	76085732	76082800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76082897_76083056_76083129_76083640_76083834_76084133_76084193_76084698_76084801_76085538
100417	chr4	+	2637	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1876	multi-exon	TRUE	non_canonical	0	0	junction_1	40.0169885798519	1	67	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206906	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146291416_146291510_146365127_146365249_146388486_146388614_146390758_146390911_146391581_146392303_146392722_146393429_146552609
100418	chr10	+	2475	4	Antisense	novelGene_ENSMUSG00000020063.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTATGTTGTCCAGGAGT	NA	False	NA	NA	False	NA	NA	NA	63158525	63168362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_63159930_63160901_63160982_63161814_63161970_63167526
100419	chr11	+	2266	1	Intergenic	novelGene_2232	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	48	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGCAGTTATTTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	20341337	20343603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_20341300_20343600
100420	chrM	+	1065	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	62	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14589_14667
100421	chr11	+	5346	22	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-27	-221	intron_retention	FALSE	canonical	3	2354	junction_8	206.960839570307	1	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332153	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
100422	chr17	+	1338	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	29	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1843.54175095114	1	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3065	False	NA	NA	False	NA	NA	NA	35816943	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820443_35820877_35821037_35821184
100423	chr16	-	1682	8	Antisense	novelGene_ENSMUSG00000072419.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	83	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGCTGAATGAATGCCGA	NA	False	NA	NA	False	NA	NA	NA	48139914	48130839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48130901_48131935_48132071_48134242_48134399_48134492_48134550_48136038_48136278_48137661_48137845_48138993_48139279_48139348
100424	chr4	+	2430	9	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	16	182324	multi-exon	TRUE	non_canonical	0	0	junction_2	69.6737934951155	1	55	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147216510	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147219028_147219122_147316807_147316901_147337800_147337863_147413438_147413566_147415724_147415863_147416444_147417029_147417365_147418054_147600177
100425	chr17	-	4380	10	Antisense	novelGene_ENSMUSG00000116895.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGGTCGCGGCGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	15243789	15230517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_15230532_15231132_15231302_15231889_15232143_15233207_15233312_15233933_15234023_15236449_15236549_15237402_15237537_15238344_15238459_15239224_15239349_15240509
100426	chr11	-	3156	2	Intergenic	novelGene_2344	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAATCCTCTTGCAA	NA	False	NA	NA	False	NA	NA	NA	57448894	57445662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57448581_57448656
100427	chr15	-	486	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	400	0	-18	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	343	False	NA	NA	False	NA	NA	NA	34443386	34440650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
100428	chr17	+	807	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	-74	1116	-74	-1116	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCGTCCCCGCCCCTTGCC	NA	False	NA	-26	True	NA	NA	NA	40157169	40157976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40158000
100430	chr4	+	2534	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	0	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0169885798519	1	43	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206900	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146291416_146291510_146293441_146293534_146388486_146388614_146390758_146390897_146391646_146392337_146392757_146393429_146552609
100431	chrM	+	1137	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	5	2	5	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	17	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTCTTGATAGTATAAACA	3	True	NA	92	True	NA	NA	NA	14149	15286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
100432	chr15	-	3041	10	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGAGAGAGAACGCAAAGG	3529	False	NA	NA	False	NA	NA	NA	102005604	101982377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982387_101990419_101990548_101992594_101992805_101993113_101993229_101994435_101994491_101994937_101995075_101997050_101997187_101997289_101997464_101998298_101998492_102003720
100433	chr2	+	3506	5	NIC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	-16	intron_retention	FALSE	canonical	3	11761	junction_1	2162.78748089127	10	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATTTTTTTTGGACTGG	NA	False	NA	NA	False	NA	NA	NA	29952110	29962573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29952293_29958280_29959644_29960196_29960368_29960452_29960600_29960930
100434	chrM	+	1619	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	-3	-71	-3	71	mono-exon	FALSE	NA	NA	NA	NA	NA	5	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	-2	True	NA	NA	False	NA	NA	NA	5324	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5300_6900
100435	chr9	-	3127	8	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	306	49	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAGACTTGTCACTTGT	NA	False	NA	NA	False	NA	NA	NA	64085801	64080658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64083007_64083375_64083496_64084220_64084352_64084601_64084824_64085000_64085086_64085177_64085300_64085504
100436	chr8	+	3357	19	FSM	ENSMUSG00000036246.15	ENSMUST00000123453.2	3443	19	58	28	58	-28	multi-exon	TRUE	canonical	2	4	junction_6	2.61524495465329	65	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCAGCTGTTCTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	70261397	70271594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_70261471_70262423_70262509_70263279_70263368_70263451_70263510_70263807_70263934_70264017_70264083_70264182_70264291_70266265_70266347_70266431_70266603_70266687_70266826_70267044_70267242_70268083_70268194_70268263_70268342_70268700_70268779_70268858_70269014_70269386_70269576_70269652_70269791_70269882_70270080_70270372
100437	chr9	+	6812	34	NNC	ENSMUSG00000035024.17	novel	5149	35	NA	NA	75	0	intron_retention	FALSE	canonical	0	0	junction_33	58.6305768031648	17	89	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTAGCATTTATTATAATTT	NA	False	NA	NA	False	NA	NA	NA	26942019	27006611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26985761_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005858
100438	chr14	+	675	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	153	-143	153	-45	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTAAGCATAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46321737	46322412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321700_46322400
100439	chr16	-	564	1	Intergenic	novelGene_3693	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100440	chr7	+	1387	1	Genic_Genomic	ENSMUSG00000060508.17	novel	NA	NA	NA	NA	-21	-26439	mono-exon	FALSE	NA	NA	NA	NA	NA	4	40	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGATTTTAAAGATGATAAA	NA	False	NA	NA	False	NA	NA	NA	19725368	19726755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_19725400_19726800
100441	chr11	-	1077	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	-26	0	-26	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	14	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427128	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
100442	chr10	+	4353	5	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	96	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCGGTTTTTTTTTTTTTTT	1625	False	NA	NA	False	NA	NA	NA	62673946	62728645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62675627_62675692_62676160_62700588_62700639_62713928_62715913_62728473
100443	chr15	+	1254	3	NIC	ENSMUSG00000003970.10	novel	1020	5	NA	NA	7	-8	intron_retention	FALSE	canonical	3	10962	junction_1	267.5	3	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTAATCCGGCGTGTGT	NA	False	NA	NA	False	NA	NA	NA	76788284	76790506	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_+_76789237_76790055_76790172_76790320
100444	chr5	+	369	1	Intergenic	novelGene_960	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197806	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
100445	chr13	+	2912	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-8	518	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	113.706859951368	2	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGTGTGGACCAGTC	NA	False	NA	NA	False	NA	NA	NA	62277738	62321751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62320656_62320823
100446	chr4	+	2962	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-16904	0	multi-exon	TRUE	non_canonical	0	0	junction_1	197.104597161564	2	41	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147297836	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147297846_147314835_147314893_147316807_147316901_147337753_147337859_147409230_147409335_147413438_147413566_147415724
100447	chr7	-	446	1	Antisense	novelGene_ENSMUSG00000078636.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	340	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCCAGGCGGCACGTCA	NA	False	NA	NA	False	NA	NA	NA	51397637	51397191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_51397200_51397600
100448	chr11	-	986	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	249	1946	0	547	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	16	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGGCCCAGGCCTGT	634	False	NA	NA	False	NA	NA	NA	93859098	93849750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
100449	chr6	+	892	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	51	0	-3	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	NA	False	NA	NA	NA	148256204	148257096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_148256200_148257100
100450	chr11	-	1280	7	NNC	ENSMUSG00000059796.17	novel	1774	11	NA	NA	-855	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	5208.723988016	1	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTTTGGGCTTCTTGTT	259	False	NA	NA	False	NA	NA	NA	69559970	69557765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559555_69559905
100451	chr17	-	2258	9	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	1657	5	-32	-5	3prime_fragment	FALSE	canonical	3	9221	junction_4	999.412296052035	6	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45882540	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338
100452	chrUn_JH584304v1	-	2321	7	Intergenic	novelGene_4687	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	149	junction_3	244.42818759073	1	49	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAATGCTGGATGTGTT	NA	False	NA	NA	False	NA	NA	NA	59667	53146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55702_56985_57152_58563_58836_59591
100453	chr6	+	3886	15	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	89	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGGACCGAACAAATGCC	529	False	NA	75	True	NA	NA	NA	122294708	122315297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296510_122296861_122297007_122297170_122297287_122297898_122298009_122298827_122299043_122299283_122299431_122299965_122300777_122302418_122302910_122309479_122309637_122310248_122310400_122311028_122311112_122311933_122312042_122313815_122313974_122315235
100454	chr5	-	1155	6	ISM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	52	5	6	-4	intron_retention	FALSE	canonical	3	8565	junction_1	2159.2650045791	6	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTGTGTGTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	65548735	65545711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081
100455	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	180	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
100456	chr13	+	2104	1	Intergenic	novelGene_1414	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTTCCAGGACAGCCAGGG	NA	False	NA	NA	False	NA	NA	NA	65604130	65606234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65604100_65606200
100457	chr15	-	1190	3	NIC	ENSMUSG00000060036.15	novel	824	5	NA	NA	1	-123	intron_retention	FALSE	canonical	3	214	junction_1	8036.5	2	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGGCTTTCACCAAGTA	3572	False	NA	NA	False	NA	NA	NA	79967553	79965219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79965413_79965815_79966784_79967524
100458	chrX	-	4496	16	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	-10932	890	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_10	46.607867719231	4	119	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGTAATTCCATCGGAAA	NA	False	NA	NA	False	NA	NA	NA	49691768	49646124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49647262_49651556_49651832_49653689_49653845_49656416_49656571_49658153_49659169_49661884_49662022_49662100_49662229_49666747_49666902_49669215_49669827_49670279_49670390_49673003_49673135_49683753_49683891_49684337_49684493_49688773_49688860_49689030_49689039_49691665
100459	chr4	+	3101	10	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	2498	5	NA	NA	-1	0	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0887903423278	4	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	925	False	NA	NA	False	NA	NA	NA	145237359	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237410_145239538_145239640_145311773_145311905_145314001_145314095_145315865_145315970_145319498_145319572_145343687_145343746_145347127_145347255_145348721_145348860_145349689
100460	chr12	+	1891	5	NIC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	3	814	intron_retention	FALSE	canonical	3	3420	junction_4	226.047561367072	10	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAGTGGTGTTAAATGC	9262	False	NA	NA	False	NA	NA	NA	100165790	100173568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_100165976_100168651_100168683_100169833_100169978_100171871_100172493_100172658
100461	chr10	+	4201	23	NNC	ENSMUSG00000019823.18	novel	3563	24	NA	NA	-3	0	intron_retention	FALSE	canonical	0	0	junction_20	51.6482260701986	2	127	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9144	False	NA	NA	False	NA	NA	NA	41352360	41363026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362115_41362367_41362468_41362589_41362664_41362753
100463	chr12	-	530	6	ISM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	72	782	-3	-550	5prime_fragment	FALSE	canonical	3	10789	junction_3	2653.3760381823	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGGAACACAAGGTAAGGGC	NA	False	NA	NA	False	NA	NA	NA	28685880	28681634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
100464	chr11	-	1077	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	-26	0	-26	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	3	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	NA	False	NA	NA	NA	115427128	115413927	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
100466	chrM	+	646	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	494	4	494	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	47	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTCTTGATAGTATAAA	-11	True	NA	22	True	NA	NA	NA	14638	15284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14600_15300
100467	chr7	-	5901	32	NNC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	26	2	intron_retention	FALSE	canonical	0	0	junction_10	47.9791404553536	8	127	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACCTTCCCTGTCTATAAA	NA	False	NA	NA	False	NA	NA	NA	29979795	29939565	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29941253_29941438_29941491_29941569_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943964_29944114_29944312_29944716_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957_29951070_29951740_29951817_29953407_29953530_29953610_29953679_29955229_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
100468	chr12	-	1845	6	NNC	ENSMUSG00000079036.11	novel	1883	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	146.348898185125	2	50	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	87490592	87474846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_87476041_87478169_87478280_87480888_87480980_87485166_87485330_87487075_87487177_87490406
100469	chr11	-	1540	6	NNC	ENSMUSG00000048076.15	novel	1991	5	NA	NA	14639	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1130.14788412844	2	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGATGGGCTTGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	59104349	59102242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_59102371_59102438_59102635_59102725_59103522_59103646_59103772_59103968_59104080_59104165
100470	chrUn_JH584304v1	-	3790	7	Intergenic	novelGene_4626	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	346.227486231556	3	109	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTCGAGAGAATGGCCAA	NA	False	NA	NA	False	NA	NA	NA	59942	52206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54879_55138_55702_56985_57152_57410_57418_58563_58836_59591
100471	chr7	+	3414	13	Antisense	novelGene_ENSMUSG00000074006.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	10	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCTCCTCTCAGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	97771793	97827422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_97773261_97774446_97774585_97775034_97775151_97775451_97775652_97777681_97777803_97778450_97778651_97780400_97780474_97780880_97781076_97782038_97782232_97784965_97785180_97801020_97801150_97811121_97811316_97827248
100472	chr9	-	5077	28	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.566557723732531	2	122	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGAGCGAGAGACCGAGA	6409	False	NA	NA	False	NA	NA	NA	72656906	72569802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569895_72577232_72577399_72578511_72578584_72584594_72584674_72584772_72584813_72593341_72593412_72617737_72617820_72619446_72619547_72625497_72625667_72628582_72628699_72628776_72628944_72632298_72632364_72633691_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642502_72643925_72644066_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648972_72649938_72650036_72650817_72650916_72653686_72653759_72654404
100473	chr4	+	2046	5	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	6	243868	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	104.789073857917	31	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAAGACTTCTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	146206906	146458872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209550_146291416_146291510_146457276_146458746_146458801
100474	chr9	+	1067	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1430	-151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8456.53461133182	1	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACCCTTGTGTGACTCTT	NA	False	NA	NA	False	NA	NA	NA	64082104	64085797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64083002_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085642
100476	chr17	-	910	3	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4167	21	632	-21	3prime_fragment	FALSE	canonical	3	10930	junction_2	637.5	1	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGATGCAGTTTTATA	NA	False	NA	NA	False	NA	NA	NA	45880030	45878721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783
100477	chr11	-	1135	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-60	-73	60	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCCCAACACTGAGCATC	4388	False	NA	NA	False	NA	NA	NA	20286086	20284951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20285000_20286100
100478	chr1	-	2302	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	121	0	121	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	10	103	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4576	False	NA	NA	False	NA	NA	NA	55127062	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
100479	chr10	-	3974	4	Intergenic	novelGene_3395	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	164	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCGAGCCCGGTGCCCGC	NA	False	NA	NA	False	NA	NA	NA	13006352	12966642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_12966763_12992451_12992530_13000603_13000911_13002883
100481	chr12	-	4898	5	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCGAACACAGAACGCGGGA	NA	False	NA	NA	False	NA	NA	NA	86565150	86516918	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86517328_86535318_86535436_86552586_86552698_86553120_86553285_86561053
100482	chrX	-	1143	8	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAAGGGGCCCCTGAGCT	NA	False	NA	NA	False	NA	NA	NA	20548943	20545655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
100483	chr5	+	2409	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	-18	39	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	1566.73022490572	3	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCAAGTTACTCCGTGG	NA	False	NA	NA	False	NA	NA	NA	129864043	129875251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864400_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869170_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
100485	chr19	+	3656	10	NIC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	-115	-278	intron_retention	FALSE	canonical	3	819	junction_3	73.3181802526192	3	117	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGGGAAGGGAAGTACACT	1518	False	NA	NA	False	NA	NA	NA	8923648	8929389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8927754_8928275_8928395_8928499_8928649_8928853
100486	chr17	+	3448	18	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	17	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	575.748809848116	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGCGCACGTCTTTA	516	False	NA	NA	False	NA	NA	NA	56610416	56630485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56630282_56630322
100487	chrM	+	827	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	551	0	551	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	113	False	NA	NA	False	NA	NA	NA	10717	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10700_11500
100489	chr4	+	2355	3	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	0	1909	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	34	10	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145136814	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136877_145138756_145138851_145176036
100490	chr17	+	2254	3	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	-3348	-414	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	84	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCCCCCAACTTCTTAGA	NA	False	NA	NA	False	NA	NA	NA	40153895	40158678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40155988_40156488_40156629_40158656
100491	chr14	-	1220	1	Antisense	novelGene_ENSMUSG00000045799.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	445	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGCACTGTAAAATATCTTG	NA	False	NA	NA	False	NA	NA	NA	13670478	13669258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_13669300_13670500
100493	chr15	-	3610	16	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	127	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACGCAAAGGACCCGGA	3533	False	NA	NA	False	NA	NA	NA	102005600	101982370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982399_101990411_101990548_101992594_101992805_101993113_101993229_101994435_101994491_101994937_101995074_101997053_101997187_101997289_101997464_101998298_101998528_101999829_101999921_102001414_102001633_102002090_102002147_102003104_102003211_102003409_102003483_102003685_102004515_102004579
100496	chr4	+	2513	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	280	2	NA	NA	-6791	-1876	multi-exon	TRUE	non_canonical	0	0	junction_3	53.2084185300516	1	37	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146200109	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146200273_146209452_146209546_146291416_146291510_146302110_146302274_146312913_146312972_146388486_146388614_146390758_146390911_146391607_146391872_146392292_146393441_146552621
100497	chr10	-	4452	12	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	77	-33	combination_of_known_splicesites	FALSE	canonical	3	19	junction_11	58.9604153522717	6	115	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCCAATTTATCACACCA	2880	False	NA	NA	False	NA	NA	NA	62723214	62648433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649192_62649302_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62722950
100498	chr3	+	2840	11	NNC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	1	171	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	237.470945591245	3	113	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCTGAACTAAACACTA	NA	False	NA	NA	False	NA	NA	NA	41510166	41568664	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546268_41548198_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
100499	chr9	+	1765	2	ISM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	581	3	0	-3	intron_retention	FALSE	canonical	3	17817	junction_1	0	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120401160	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_120401264_120401833
100500	chr7	-	1584	8	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	5	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGCAGCACGCGGGCGG	NA	False	NA	NA	False	NA	NA	NA	46505051	46495266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46495341_46497018_46497168_46498394_46498513_46499599_46499774_46500306_46500482_46501299_46501417_46503404_46503529_46504398
100502	chr8	+	950	6	NNC	ENSMUSG00000003812.14	novel	4073	7	NA	NA	1	-96	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	35.9410628668658	136	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTAACAGTGCCTTAACC	NA	False	NA	NA	False	NA	NA	NA	85635319	85638241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636472_85637964
100504	chr19	+	2906	18	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	42	-104	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	220.383921065852	2	74	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCCAATTCTCAGAAATAA	3511	False	NA	NA	False	NA	NA	NA	8919280	8929563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921477_8923208_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
100505	chr4	+	2255	13	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	42	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGCGCAGTGGCGGGAGC	257	False	NA	NA	False	NA	NA	NA	137469056	137523603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137469664_137469829_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483055_137485876_137486043_137523551
100506	chr9	-	690	5	NNC	ENSMUSG00000097445.2	novel	2505	2	NA	NA	5202	10052	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	12032	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGCACGCTGGGCGGAGCA	9623	False	NA	NA	False	NA	NA	NA	57439710	57428517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_57428698_57436237_57436354_57437521_57437644_57438949_57439075_57439563
100507	chr5	-	2118	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-81	-96	-81	96	mono-exon	FALSE	NA	NA	NA	NA	NA	19	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833636	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
100508	chr17	-	2505	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	12	3	-4	-3	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	4	60	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884185	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
100509	chr2	-	3069	4	FSM	ENSMUSG00000078861.9	ENSMUST00000108924.9	962	4	-47	-2060	4	2060	multi-exon	FALSE	canonical	3	15	junction_1	38.724095283887	6	89	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCTTGGAGAAGCCCAAAG	NA	False	NA	NA	False	NA	NA	NA	177720265	177707427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177710194_177711347_177711409_177711615_177711743_177720150
100510	chr3	+	2291	10	Intergenic	novelGene_3091	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	54	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTAGAAACAAAAAAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	27151373	27181993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_27152637_27154975_27155123_27156544_27156654_27169546_27169700_27171926_27172066_27176109_27176232_27176546_27176625_27178050_27178136_27181028_27181135_27181904
100511	chr4	+	2595	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-8	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	43.1397728320398	6	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147576865	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147637734_147637884_147661528_147661587_147665698_147665826_147667290_147668674_147668917
100512	chr11	+	4120	2	Intergenic	novelGene_2353	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	88	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57446710	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57450433_57450525
100513	chr6	+	6615	22	NNC	ENSMUSG00000030058.18	novel	4140	24	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	301.616326088734	9	137	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATTGGTGTCAGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	87864909	87890573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867254_87868930_87869007_87869187_87869281_87869614_87870936_87871022_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882184_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
100514	chr13	+	661	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-12	-21	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554682_74554949
100515	chr7	-	1154	3	Intergenic	novelGene_2901	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTACAGCAAGACCGTTTC	NA	False	NA	NA	False	NA	NA	NA	26711096	26581774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_26582364_26583007_26583085_26710608
100516	chr19	+	3043	18	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	67	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	221.687129511398	1	81	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGCTCCTCCAGGCTCAG	3536	False	NA	NA	False	NA	NA	NA	8919305	8929655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926327_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
100518	chr17	-	2462	15	NNC	ENSMUSG00000024170.16	novel	3530	21	NA	NA	-2166	1	intron_retention	FALSE	canonical	2	5	junction_14	24.3617507162187	13	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACAGGCTGCTTCTGTGG	NA	False	NA	NA	False	NA	NA	NA	25329290	25318549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25319095_25320272_25320389_25320613_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326414_25329200
100519	chr11	+	1145	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	351	3	-154	-3	multi-exon	FALSE	canonical	3	35417	junction_1	0	2	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGGTGTCACTTGTGA	NA	False	NA	NA	False	NA	NA	NA	62442347	62444036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
100520	chr5	-	2352	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	6	260	6	multi-exon	FALSE	canonical	3	916	junction_1	0	64	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
100521	chr11	+	745	5	FSM	ENSMUSG00000071866.13	ENSMUST00000132846.2	1170	5	425	0	0	0	multi-exon	FALSE	canonical	3	36680	junction_4	732.852474922477	708	40	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTTGTTTGTATTGGAG	NA	False	NA	NA	False	NA	NA	NA	6365867	6369817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_6365980_6368100_6368132_6368225_6368315_6369112_6369286_6369477
100523	chr5	-	2615	18	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	-5	28	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	218.058514098703	4	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTAAATCCCTCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	31337481	31314759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316535_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330828_31337262
100524	chr7	+	2512	23	NNC	ENSMUSG00000056394.21	novel	3174	28	NA	NA	9411	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	289.227597759593	1	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGGTGAGGAGGTCTA	5747	False	NA	NA	False	NA	NA	NA	13022601	13045348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13022686_13023319_13023422_13025112_13025239_13025385_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
100525	chr4	+	2034	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-2	-5	multi-exon	FALSE	non_canonical	0	0	junction_2	54.7452281025479	1	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147576871	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147578832_147578903_147665698_147665826_147667290_147667436_147667927_147668422_147668589
100526	chr3	+	3707	19	NNC	ENSMUSG00000068823.11	novel	3849	19	NA	NA	-1	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5517.58831648818	2	73	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATCCTGTTTTTTTTAAT	NA	False	NA	NA	False	NA	NA	NA	102927926	102965123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947363_102948469_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951893_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
100527	chr5	-	3630	13	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23526	45630	intron_retention	FALSE	non_canonical	0	0	junction_1	0	6	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTATTACAAGAAGTTTT	NA	False	NA	NA	False	NA	NA	NA	108256870	108208601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228888_108229000_108229084_108234864_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248820_108254448_108255470_108255513
100528	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
100529	chr11	-	787	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	189	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGCCTT	4388	False	NA	NA	False	NA	NA	NA	20286086	20284822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285109_20285585
100530	chr15	+	1678	13	NNC	ENSMUSG00000056851.15	novel	2952	15	NA	NA	-6	26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	192.208653984847	2	74	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTGGATGCCACAGTGA	2117	False	NA	NA	False	NA	NA	NA	102379081	102407342	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102379239_102381719_102381887_102383009_102383127_102387050_102387183_102391594_102391724_102392591_102392676_102394382_102394476_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
100531	chr4	+	5344	2	Antisense	novelGene_ENSMUSG00000055296.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	109	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTTAGTAAGAAGTTT	NA	False	NA	NA	False	NA	NA	NA	56873452	56879008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_56875667_56875878
100532	chr14	+	3314	1	Intergenic	novelGene_629	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGAGGCAACGCTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	96345218	96348532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_96345200_96348500
100533	chr9	+	587	4	FSM	ENSMUSG00000032399.9	ENSMUST00000213760.2	596	4	253	-244	253	-152	multi-exon	FALSE	canonical	3	19599	junction_2	572.368956375363	79	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCCTTGTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	64084669	64085796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64084760_64085002_64085087_64085178_64085300_64085504
100534	chr15	-	1302	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-92	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1851.66807680714	1	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAACCGCT	666	False	NA	NA	False	NA	NA	NA	36793855	36771812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772208_36772819_36773022_36775482_36775579_36775776_36775824_36776489_36776614_36790927_36791233_36793722
100535	chr5	-	2070	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-81	96	multi-exon	FALSE	non_canonical	0	0	junction_1	0	86	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833636	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5832311_5832358
100536	chr15	-	1980	16	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	-1	14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	409.756263595269	1	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGTGATGCCCGAGTTG	NA	False	NA	NA	False	NA	NA	NA	96953838	96894631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906594_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
100537	chr4	+	3644	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078497.10	novel	585	4	NA	NA	-35	2154	multi-exon	FALSE	canonical	0	0	junction_3	210.45056426629	836	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	4075	False	NA	NA	False	NA	NA	NA	147314705	147477615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147447267_147447362_147449040_147449174_147469614_147469759_147472778_147472906_147474656
100538	chr1	-	842	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	-3	-161	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	NA	False	NA	NA	False	NA	NA	NA	24653893	24653051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
100539	chr17	+	602	2	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	90	3	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTCCATGTTGGCTGTCC	NA	False	NA	114	True	NA	NA	NA	45878701	45879407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153
100540	chr9	-	4642	9	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	-3	-20	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	429.397961540341	2	100	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCTTTTAAAAATGTGTA	NA	False	NA	NA	False	NA	NA	NA	96993089	96957637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96971872_96971930_96975129_96975231_96979155_96979234_96982127_96982293_96992963
100541	chr11	-	1865	2	NNC	ENSMUSG00000087120.2	novel	294	2	NA	NA	-2162	-748	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	79	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCAGATGTGGGTGGGA	NA	False	NA	NA	False	NA	NA	NA	62444029	62441620	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_62442420_62442963
100542	chr1	-	1747	3	NNC	ENSMUSG00000036086.17	novel	4210	21	NA	NA	1	-25428	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87	5	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTTCCCTCTCACTGC	NA	False	NA	NA	False	NA	NA	NA	128030190	128011020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128011029_128018209_128019748_128029989
100543	chr15	-	1776	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	64	13	0	-13	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	518	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTTCCACTTATTCAGAG	NA	False	NA	NA	False	NA	NA	NA	31601886	31590958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
100544	chr13	+	3166	1	NIC	ENSMUSG00000064138.15	novel	3876	6	NA	NA	125962	-2610	mono-exon	FALSE	NA	NA	NA	NA	NA	5	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATATGCATGCAGTTAA	NA	False	NA	NA	False	NA	NA	NA	77982864	77986030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_77982900_77986000
100545	chr1	-	3221	8	NNC	ENSMUSG00000026571.13	novel	4110	19	NA	NA	-5551	-10	intron_retention	FALSE	non_canonical	0	0	junction_6	16.1105872148772	4	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGATATCCTAAATTTGA	9220	False	NA	NA	False	NA	NA	NA	165185118	165157083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_165157573_165160857_165160964_165164313_165164403_165165756_165167593_165178452_165178850_165179040_165179110_165179531_165179646_165184997
100546	chr5	+	5484	26	FSM	ENSMUSG00000036403.16	ENSMUST00000121979.8	5537	26	14	39	14	-38	multi-exon	FALSE	canonical	3	24	junction_14	5.86433286913354	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAGCAAAATATGAATAAAA	NA	False	NA	NA	False	NA	NA	NA	76736561	76794274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_76736772_76739561_76739719_76741038_76741230_76741869_76742038_76743239_76743382_76745203_76745289_76749233_76749363_76750983_76751200_76754568_76754635_76757477_76757617_76759496_76759721_76763484_76763638_76764649_76764803_76769130_76769209_76772473_76772626_76778511_76778628_76778699_76778855_76779271_76779328_76780005_76780175_76781519_76781631_76781998_76782185_76784708_76784919_76785910_76786114_76786768_76786874_76788728_76788843_76792478
100547	chrX	-	4599	3	NIC	ENSMUSG00000042386.8	novel	2116	4	NA	NA	-33	-19	intron_retention	FALSE	canonical	2	3	junction_1	0.5	23	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTATTTACCCACTTGAG	290	False	NA	NA	False	NA	NA	NA	139714215	139709074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_139710457_139710749_139713872_139714120
100548	chr7	-	1184	2	Antisense	novelGene_ENSMUSG00000109220.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	25	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTGTATGTCTTACAGA	6422	False	NA	NA	False	NA	NA	NA	60041556	59893345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_59894459_60041485
100549	chr1	+	3552	14	NNC	ENSMUSG00000026439.15	novel	2856	14	NA	NA	12	-2	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	115.845643067625	1	67	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTAAACCACAAGTATACAT	NA	False	NA	NA	False	NA	NA	NA	132405116	132433391	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418216_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
100550	chr2	-	3113	13	NNC	ENSMUSG00000026925.17	novel	4147	10	NA	NA	2354	6891	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCGCTTCTGCGGTCACTT	7613	False	NA	-61	True	NA	NA	NA	26287129	26279369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_26279446_26279949_26280151_26280239_26280322_26280505_26280588_26281093_26281188_26281874_26281979_26282423_26282686_26282915_26283010_26283096_26283215_26283306_26283400_26283529_26283592_26285035_26285182_26285430
100551	chr13	-	4751	1	Intergenic	novelGene_1490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	71	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCAACAACTGCAAACTTC	NA	False	NA	NA	False	NA	NA	NA	81811085	81806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_81806300_81811100
100552	chr4	+	2091	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-44	-7	multi-exon	FALSE	non_canonical	0	0	junction_3	44.3824915428996	5	23	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAAGTTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147209668	147669648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536227_147665698_147665826_147667290_147667436_147667927_147668409_147668576
100553	chr1	+	3198	11	Antisense	novelGene_ENSMUSG00000037351.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTCCCCTCCCCCAGTGC	NA	False	NA	NA	False	NA	NA	NA	36737194	36749036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_36739262_36739418_36739459_36739616_36739681_36740216_36740392_36740503_36740597_36740767_36740981_36741137_36741267_36741557_36741680_36745946_36746027_36747271_36747336_36748885
100554	chr10	-	2906	10	ISM	ENSMUSG00000047146.18	ENSMUST00000174189.2	14369	13	59920	8072	-24657	-27	3prime_fragment	FALSE	canonical	3	87	junction_3	16.6866546810451	4	23	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTATCACACCAAATTCC	NA	False	NA	NA	False	NA	NA	NA	62674977	62648427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954
100555	chr4	-	1049	7	Antisense	novelGene_ENSMUSG00000073775.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	0	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTTTTTTTCCTA	4783	False	NA	NA	False	NA	NA	NA	108719064	108691847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_108692053_108703146_108703205_108710361_108710417_108713342_108713417_108715119_108715191_108716470_108716554_108718561
100556	chr16	-	2461	8	NNC	ENSMUSG00000022881.16	novel	1228	11	NA	NA	799	5226	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTAAGTTAATAATGAAACTA	NA	False	NA	-29	True	NA	NA	NA	22932695	22927466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_22927600_22928732_22928904_22928983_22929092_22929327_22929472_22929873_22930011_22930249_22930342_22930565_22930645_22931098
100557	chr3	+	1955	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	427.026754301049	1	95	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCTATAGGAAATGTTATT	4842	False	NA	NA	False	NA	NA	NA	34074239	34123481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101788_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34116054_34116181_34118267_34118469_34123065
100558	chr4	+	4210	9	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-11	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	154.429393251414	30	90	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGGTTGACTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	145397243	145431004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145401077_145401211_145406465_145406546_145422720_145422806_145425813_145425941_145426837_145426909_145427474_145429340_145429423
100559	chr4	+	2120	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	6	0	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3199076928666	2	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216500	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447362_147637752_147637884_147639766_147639852_147665698_147665826_147667290_147667431_147668090_147668409_147668576
100560	chr16	-	564	1	Intergenic	novelGene_3694	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	29	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100561	chr5	-	1871	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	47	2	-5	-2	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	2	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8936	False	NA	NA	False	NA	NA	NA	142892462	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
100562	chrX	-	4654	2	Intergenic	novelGene_4031	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	219	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACCCTGGCCATTACCAG	NA	False	NA	NA	False	NA	NA	NA	116231727	116226866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116228215_116228421
100563	chr3	+	1082	1	ISM	ENSMUSG00000027940.19	ENSMUST00000119570.8	2233	9	27161	9	9753	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	4	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGATCAGACCGGCTTGA	6277	False	NA	NA	False	NA	NA	NA	90007118	90008200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_90007100_90008200
100564	chr5	+	4342	10	NIC	ENSMUSG00000029283.18	novel	3679	11	NA	NA	-8	5	intron_retention	FALSE	canonical	3	232	junction_7	20.9290394275042	17	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATACTTATTTAAAGAGTA	NA	False	NA	NA	False	NA	NA	NA	107112179	107132303	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107123527_107124495_107124579_107127160_107127311_107130829
100565	chrM	+	551	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	401	5	401	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	295	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAAATATGTCTGATAA	34	False	NA	-67	True	NA	NA	NA	3151	3702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_3200_3700
100566	chr5	+	3337	11	NIC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	11	0	intron_retention	FALSE	canonical	3	792	junction_6	85.064740051328	3	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815988	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824512_33825306_33825398_33825477_33825580_33826005_33826992_33828747_33828855_33829008
100568	chr15	-	1195	1	Antisense	novelGene_ENSMUSG00000022300.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	30	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAATGAAGATAGAAA	NA	False	NA	NA	False	NA	NA	NA	38996675	38995480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_38995500_38996700
100570	chr7	-	1409	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	6725.38012750023	1	20	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	126398334	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398223
100571	chrX	-	2351	4	NNC	ENSMUSG00000072844.7	novel	2380	2	NA	NA	-24856	-1436	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5.65685424949238	1	80	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAAATCCAGGCCCATCCA	NA	False	NA	NA	False	NA	NA	NA	168786769	168759474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_168760266_168764155_168765237_168766270_168766710_168786729
100573	chr9	-	594	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	18	7	18	-7	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	4	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAATGTGCGTCGTCAT	NA	False	NA	NA	False	NA	NA	NA	78275441	78274340	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
100574	chr4	-	2944	11	Antisense	novelGene_ENSMUSG00000095096.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	13.2	17	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCCATGACTTCCTGACC	NA	False	NA	NA	False	NA	NA	NA	146552848	146033915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146033925_146094917_146095021_146206919_146207049_146209449_146209549_146291419_146291511_146384371_146384429_146388484_146388613_146390757_146390908_146391321_146392577_146392744_146393458_146552638
100575	chr12	+	5125	5	Antisense	novelGene_ENSMUSG00000113160.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	47	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTTTCCGTGTCGTTAT	NA	False	NA	NA	False	NA	NA	NA	23748053	23923717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_23748360_23752739_23754758_23916492_23917036_23921414_23922241_23922285
100576	chr7	+	3470	26	NNC	ENSMUSG00000066232.5	novel	4763	25	NA	NA	-20	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	233.88532574747	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCAATTATGTCTTGATCT	7178	False	NA	NA	False	NA	NA	NA	109617460	109655318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_109617716_109626277_109626361_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223_109654345_109655160
100578	chr17	-	2397	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-21	intron_retention	FALSE	non_canonical	0	0	junction_2	3150.19722588657	24	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGATGCAGTTTTATA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879221_45879317_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
100579	chrM	+	1442	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-291	227	-291	-227	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATTTTCTTGATCAAACT	-2	True	NA	NA	False	NA	NA	NA	9875	11317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11300
100580	chr13	+	2459	5	Intergenic	novelGene_1427	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	54.1265877365274	1	34	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATCCCAGAAATGTGT	NA	False	NA	NA	False	NA	NA	NA	65950518	65954690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_65951584_65951667_65952435_65952687_65953124_65954299_65954361_65954560
100581	chrM	-	1498	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1424	-5	1424	mono-exon	FALSE	NA	NA	NA	NA	NA	2	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCTCGAATTAAAATACTT	9245	False	NA	NA	False	NA	NA	NA	6943	5445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5400_6900
100582	chr17	+	4827	13	NNC	ENSMUSG00000061607.16	novel	649	4	NA	NA	151	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	59.0703441293138	45	51	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9541	False	NA	NA	False	NA	NA	NA	36152718	36170562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152775_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161406_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36169838
100583	chr16	+	3016	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	-55	0	-55	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	93	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	20470346	20482164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
100584	chr7	-	3163	15	NNC	ENSMUSG00000037020.17	novel	4768	33	NA	NA	258	-1	intron_retention	FALSE	non_canonical	0	0	junction_2	59.1375083847737	4	61	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCCCTGTCTATAAAGC	3027	False	NA	NA	False	NA	NA	NA	29951042	29939563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_29939910_29940002_29941261_29941438_29941700_29941822_29941938_29942170_29942303_29942467_29942567_29942855_29942960_29943257_29943386_29943921_29943964_29944711_29944931_29947040_29947094_29949203_29949338_29950102_29950226_29950816_29950881_29950957
100585	chr16	-	564	1	Intergenic	novelGene_3695	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	651	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100587	chr16	-	2772	15	Antisense	novelGene_ENSMUSG00000022652.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGAAGACGTGGATGTCT	NA	False	NA	NA	False	NA	NA	NA	48363535	48251680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_48251766_48257637_48257690_48262765_48262801_48266673_48266742_48269662_48269754_48270360_48270469_48272791_48272953_48281040_48281149_48300190_48300312_48319104_48319189_48320455_48320524_48322663_48322731_48330557_48330704_48334948_48335103_48362111
100588	chr4	+	1979	6	Intergenic	novelGene_2046	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	239.371343314107	11	21	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	2312	False	NA	NA	False	NA	NA	NA	146289370	146319725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146311597_146311633_146312866_146312972_146317966_146318497_146318664
100589	chr15	+	942	9	NNC	ENSMUSG00000056851.15	novel	1086	14	NA	NA	65	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218.249856815532	1	25	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGGAATTTTTCAAAAAAAAA	208	False	NA	NA	False	NA	NA	NA	102387136	102407285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_102387145_102391615_102391724_102392588_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398189_102398243_102399068_102399239_102406923
100590	chr4	+	5393	6	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	100	2591	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	53.6566864426047	1	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	147216594	147267627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147216818_147219028_147219122_147249797_147249844_147260303_147260362_147261203_147261331_147262781
100591	chr4	+	3345	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-5	-1876	multi-exon	FALSE	non_canonical	0	0	junction_2	76.7317404989617	1	76	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206936	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146209452_146209550_146368119_146368209_146370031_146370163_146371784_146371903_146384284_146384431_146388486_146388614_146390758_146390904_146391317_146392124_146392292_146393401_146552581
100592	chr10	+	2974	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2588.37496254804	3	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014658_81014899_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016525_81016701_81016992_81017061_81017245_81017326_81017460_81017722
100594	chr2	-	3161	5	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-15	1732	combination_of_known_junctions	FALSE	canonical	3	253	junction_4	344.203700590217	5	97	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTATGTTTCTGTCTGTCC	2322	False	NA	NA	False	NA	NA	NA	177270018	177259264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
100596	chr11	-	1851	1	Intergenic	novelGene_2215	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCACATCTTCAACGACAA	NA	False	NA	NA	False	NA	NA	NA	6840189	6838338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_6838300_6840200
100597	chrX	-	6919	1	NIC	ENSMUSG00000085396.8	novel	1145	7	NA	NA	18358	5605	mono-exon	FALSE	NA	NA	NA	NA	NA	12	182	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATCTGACTCCTACAATC	NA	False	NA	NA	False	NA	NA	NA	49705585	49698666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_-_49698700_49705600
100598	chr4	+	3017	6	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33252	-1720	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	299.280871423484	3	38	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCTACGGAATCTTAATA	NA	False	NA	NA	False	NA	NA	NA	146500227	146553029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500361_146502788_146502850_146533486_146533533_146547961_146548020_146548860_146548988_146550437
100599	chr17	-	2377	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	-48	intron_retention	TRUE	non_canonical	0	0	junction_3	3150.19722588657	11	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTTCTAAAATTAAAAGTAT	NA	False	NA	NA	False	NA	NA	NA	45884195	45878748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45879832_45879924_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
100600	chr16	+	564	1	Intergenic	novelGene_3696	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
100601	chr2	+	2082	12	FSM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	137	1376	62	-1376	multi-exon	FALSE	canonical	1	2	junction_7	5.33195574495097	2	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGCCTGAGGCCTCCA	2834	False	NA	NA	False	NA	NA	NA	30023894	30040649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
100602	chr4	-	2321	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	46	155	46	-155	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	6	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTTCACTGAAGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	137523649	137469198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
100603	chrX	+	1700	12	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	12780	476	-2399	-476	3prime_fragment	FALSE	canonical	3	3115	junction_1	295.964762253664	11	31	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTAGCCATCCTGGCTG	NA	False	NA	NA	False	NA	NA	NA	20541916	20548942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
100604	chr17	+	554	2	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATGTAGCCCATTGTAGA	NA	False	NA	112	True	NA	NA	NA	45878699	45879357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153
100605	chr15	-	1290	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	9979.59910993732	9	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTTTTCCCACATTT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965230_79965815_79965985_79966590_79966784_79967524
100606	chr11	-	1088	12	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	96	-34	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7822.36563952025	1	47	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATGTGAAATAAACTCAG	NA	False	NA	NA	False	NA	NA	NA	33112976	33102544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102600_33102660_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111101_33111226_33111547_33111628_33112921
100607	chr17	-	3778	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	95	1836	intron_retention	FALSE	canonical	3	31	junction_1	71.3699759660024	14	37	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCATGTTGGGTAT	NA	False	NA	NA	False	NA	NA	NA	37300301	37278250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546
100608	chr9	+	2050	9	NNC	ENSMUSG00000032607.13	novel	2082	9	NA	NA	-15	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	65.1685315163692	1	94	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTACTTGCTATGGTCTCT	NA	False	NA	NA	False	NA	NA	NA	108174093	108179491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174323_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
100610	chr7	+	1423	9	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2421	-18051	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	47	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGGACGGGAGGCGGGG	NA	False	NA	NA	False	NA	NA	NA	126394418	126398350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394691_126394787_126394988_126395124_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505_126396720_126396814_126396953_126398220
100611	chr17	-	2445	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-11	intron_retention	FALSE	non_canonical	0	0	junction_1	4178.25711990059	35	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTATACAGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879034_45879162_45879489_45879783_45880053_45880165_45880314_45880395_45880707_45881171_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
100612	chr11	+	2170	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	-28	-580	-28	-99	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	1	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTTTTTATTCATAACCC	NA	False	NA	NA	False	NA	NA	NA	80274194	80286972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
100614	chr13	+	3516	3	FSM	ENSMUSG00000113836.2	ENSMUST00000223499.2	687	3	-25	-2804	-25	1224	multi-exon	FALSE	canonical	3	21	junction_2	28	5	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGTTTCCACCCCAGCTT	NA	False	NA	NA	False	NA	NA	NA	62163772	62200024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62163867_62194994_62195122_62196729
100615	chr4	+	2050	4	Intergenic	novelGene_2036	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	86	junction_2	238.174072663019	1	83	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTCCTGTAACTAACTCC	2288	False	NA	NA	False	NA	NA	NA	146289346	146319686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146312913_146312972_146317966
100616	chr4	+	1985	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14310	768	multi-exon	FALSE	non_canonical	0	0	junction_2	27.8128667266709	1	36	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145158999	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036_145176310_145176477_145177142_145177330
100617	chr13	-	2859	13	NIC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	23	-1	intron_retention	FALSE	canonical	3	330	junction_9	1964.59336158628	1	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGACGTGTGCCCAATTTG	4826	False	NA	NA	False	NA	NA	NA	58550255	58539049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_-_58540231_58541009_58541180_58541505_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
100618	chr9	+	752	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-44	-218	-44	218	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAGCACCTGACAC	NA	False	NA	NA	False	NA	NA	NA	96777666	96778418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
100619	chr7	-	1350	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6644.36332540598	2	35	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGTCTGTTGTTCATGTC	NA	False	NA	NA	False	NA	NA	NA	126398356	126394409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394642_126394826_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
100621	chr7	-	3667	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1326.2602443818	3	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682164	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673101_110673260_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
100622	chr10	-	1874	1	Antisense	novelGene_ENSMUSG00000020255.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	30	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCCCCCAATGTTGGCT	NA	False	NA	NA	False	NA	NA	NA	83279329	83277455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_83277500_83279300
100623	chr14	-	3219	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-21	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1827.1261544773	2	154	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGTTATATAAAATGTACT	NA	False	NA	NA	False	NA	NA	NA	36857250	36842062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855123_36855228_36855589_36855761_36857151
100625	chr5	+	3426	1	Antisense	novelGene_ENSMUSG00000052776.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAGATGAATTACTCTAGA	NA	False	NA	NA	False	NA	NA	NA	121040066	121043492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_121040100_121043500
100626	chr9	-	1735	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	55	4	55	-4	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	173511	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7155	False	NA	NA	False	NA	NA	NA	78388951	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
100627	chr17	+	1145	1	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	83	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGAACTCCATCTCGTCCA	1659	False	NA	NA	False	NA	NA	NA	36144836	36145981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36144800_36146000
100628	chr17	+	912	5	FSM	ENSMUSG00000006818.6	ENSMUST00000007012.6	5861	5	162	4787	-17	-269	multi-exon	FALSE	canonical	3	3082	junction_4	106.177622406984	2	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCGCATACTCTGTGTGAA	NA	False	NA	NA	False	NA	NA	NA	13226865	13234234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
100629	chr7	-	3475	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	-24	3	-22	0	multi-exon	FALSE	canonical	3	875	junction_26	151.95728923444	817	9	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGTGTGTTGTGGTCT	NA	False	NA	NA	False	NA	NA	NA	44198295	44182172	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
100630	chr4	+	4132	9	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	2	-8	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	180.128946868625	126	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	145397256	145431003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145401077_145401211_145402842_145402936_145406465_145406546_145422723_145422806_145425813_145425941_145427474_145429331_145429497
100631	chr4	+	1684	6	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14303	2914	multi-exon	TRUE	non_canonical	0	0	junction_2	23.6	1	48	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	145159006	145180372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145176036_145176410_145176494_145176697_145176945_145177478_145177833_145177910_145180016
100632	chr16	+	2780	16	Antisense	novelGene_ENSMUSG00000060657.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	39	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGACTCCGCAGCTCCCGCC	8576	False	NA	NA	False	NA	NA	NA	13949317	13977088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_13949487_13950223_13950344_13950433_13950668_13954798_13954885_13956211_13956382_13958042_13958174_13959506_13959666_13959750_13959909_13960094_13960522_13963780_13963954_13964587_13964708_13966881_13967106_13969004_13969181_13970426_13970575_13971691_13971898_13977009
100633	chr4	+	3029	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-10	3	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	85.5584595466749	23	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033857	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146035050_146035222_146054375_146054480_146058453_146058581_146060726
100634	chr11	-	1260	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-185	-73	185	mono-exon	FALSE	NA	NA	NA	NA	NA	7	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAG	4388	False	NA	NA	False	NA	NA	NA	20286086	20284826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
100635	chr11	-	2514	3	Intergenic	novelGene_2325	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_1	51	2	118	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57450920	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446486_57447336_57448776_57450695
100636	chrY	-	1549	3	Intergenic	novelGene_4713	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	18	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGAGTTTCCAAGGTGCT	9369	False	NA	NA	False	NA	NA	NA	90735007	90729853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_-_90730995_90733203_90733481_90734876
100637	chr11	-	1345	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	116818	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
100638	chr18	+	627	2	Intergenic	novelGene_4502	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCAATTTGCAACAAGACC	NA	False	NA	NA	False	NA	NA	NA	9597117	9597937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_9597427_9597619
100639	chr11	-	1567	6	Antisense	novelGene_ENSMUSG00000020402.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17218	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTTTCCGTGTTGGCA	-6	True	NA	NA	False	NA	NA	NA	52280220	52267257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_52267368_52267471_52267527_52274675_52274905_52276407_52276560_52278241_52278299_52279256
100640	chrM	-	639	2	Antisense	novelGene_ENSMUSG00000064371.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	15	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGTGTTACTGATGAAAA	899	False	NA	59	True	NA	NA	NA	15289	14350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14718_15017
100641	chr7	+	3839	19	NIC	ENSMUSG00000006649.18	novel	4608	30	NA	NA	4096	12	intron_retention	FALSE	canonical	2	12	junction_1	14.4270194041905	20	48	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTCCAAGCCAAAGG	NA	False	NA	NA	False	NA	NA	NA	30163245	30186660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_30163328_30164890_30165078_30165176_30165307_30165433_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
100642	chr15	-	1297	2	Intergenic	novelGene_3305	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	6	10	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAGGGGTGGAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	74210046	74180509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_74181733_74209972
100643	chr2	-	2669	4	NNC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-5471	1692	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	324.32631030423	1	46	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAATTCTGATTGGTGTGA	NA	False	NA	NA	False	NA	NA	NA	177275474	177259304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177261259_177261510_177262087_177263226_177263288_177275396
100644	chrX	-	2794	2	Genic_Genomic	ENSMUSG00000083327.2	novel	2406	1	NA	NA	-225	209	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGAAGAGTGAATTACCAG	NA	False	NA	NA	False	NA	NA	NA	103392065	103389225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_103391876_103391921
100645	chr17	-	2232	1	Intergenic	novelGene_278	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCTAAACATAATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	66304894	66302662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_66302700_66304900
100646	chr15	-	2970	18	NNC	ENSMUSG00000033075.18	novel	6575	18	NA	NA	-14	-223	at_least_one_novel_splicesite	FALSE	canonical	1	7	junction_14	55.4944431271554	2	69	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGAATGTGTTTACCATT	6328	False	NA	NA	False	NA	NA	NA	97991265	97939836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974558_97980123_97980209_97982850_97982982_97984966_97985015_97991163
100647	chr15	-	3322	9	NIC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	18	-29	intron_retention	FALSE	canonical	3	5476	junction_5	322.577025685339	4	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGCTGTCTGGTAACTGC	NA	False	NA	NA	False	NA	NA	NA	31601868	31590974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593781_31594242_31594393_31594479_31595990_31597556_31597722_31598145_31598207_31601746
100648	chr14	+	946	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-101	-160	-1	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	5	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAACTCA	NA	False	NA	NA	False	NA	NA	NA	46321483	46322429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
100649	chr4	+	2594	9	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	0	-7	intron_retention	FALSE	non_canonical	0	0	junction_7	234.982845118532	1	105	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAAACTTGGTTTCAAAT	669	False	NA	NA	False	NA	NA	NA	118966000	118994520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990737_118991051_118991157_118991565_118991663_118992925_118993130_118993442
100650	chr17	-	2218	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-18	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	5	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884192	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878854_45879236_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
100651	chr13	-	2885	4	Genic_Genomic	ENSMUSG00000113311.2	novel	661	2	NA	NA	-2303	4491	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGCCCGCGAGGCTCC	6693	False	NA	NA	False	NA	NA	NA	74557159	74547810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_74547911_74553896_74554023_74554221_74554281_74554559
100652	chr4	+	2127	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-5	0	multi-exon	TRUE	canonical	0	0	junction_1	47.136397825884	23	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576868	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577009_147646898_147646979_147661528_147661587_147665698_147665826_147667290_147668275_147668917
100653	chr12	-	2186	6	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7551	junction_4	341.990994033469	6199	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111637782_111637858_111638014_111638199_111638408_111638663
100654	chr5	+	1098	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	48	212	-22	-212	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	6	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697573	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
100656	chr7	-	1853	4	NIC	ENSMUSG00000030695.17	novel	796	7	NA	NA	-14	-80	intron_retention	FALSE	canonical	3	862	junction_3	9090.04181630768	7	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCTGTCTACAAGGCTCT	NA	False	NA	NA	False	NA	NA	NA	126398356	126395290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126395928_126396025_126396949_126397145_126397299_126398216
100657	chr4	-	2701	6	Antisense	novelGene_ENSMUSG00000078503.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCAGCCGAGATACATC	7473	False	NA	NA	False	NA	NA	NA	145265349	145237373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237584_145241498_145241517_145245502_145245553_145257378_145257484_145261383_145261512_145263159
100658	chrUn_MU069435v1	-	485	1	Intergenic	novelGene_4726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	485	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_500
100659	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	52	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
100660	chr5	+	297	1	Intergenic	novelGene_966	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197878	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197900_146198200
100661	chrX	+	2423	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	127	12	-53	-12	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	4	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCTTTTCATTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	100473287	100492185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
100662	chr3	-	5055	2	Antisense	novelGene_ENSMUSG00000048332.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	120	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	53026053	53020956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_53021609_53021650
100663	chr17	+	3675	17	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	5	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	697.905479698899	10	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGCCGGGCAGTGGTG	504	False	NA	NA	False	NA	NA	NA	56610404	56630472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619421_56619803_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
100664	chr11	-	1252	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-177	-73	177	mono-exon	FALSE	NA	NA	NA	NA	NA	7	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	4388	False	NA	NA	False	NA	NA	NA	20286086	20284834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
100665	chr16	-	564	1	Intergenic	novelGene_3697	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100667	chr17	-	1770	5	Antisense	novelGene_ENSMUSG00000071172.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACATAAACCTTACAATCC	2415	False	NA	NA	False	NA	NA	NA	29261715	29255259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29255421_29257461_29257572_29259733_29259786_29260178_29260265_29260354
100668	chr5	+	3317	2	Antisense	novelGene_ENSMUSG00000040731.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	139	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGCGTGGTGGCACACA	NA	False	NA	NA	False	NA	NA	NA	134648733	134652350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_134650503_134650802
100669	chr4	+	3233	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	12	178557	at_least_one_novel_splicesite	FALSE	canonical	2	31	junction_3	35.1476884019419	2	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146206912	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146206973_146209452_146209546_146240246_146240293_146384326_146384431_146388486_146388614_146390758
100670	chr17	+	1660	4	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAGGCAGAAGAGGCCG	2538	False	NA	NA	False	NA	NA	NA	36145715	36149117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36146930_36147052_36147180_36147536_36147632_36148893
100671	chr11	-	1569	10	NNC	ENSMUSG00000005198.16	novel	6740	29	NA	NA	2537	-699	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	126.733315798701	3	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCTACTCACCCACCAG	478	False	NA	NA	False	NA	NA	NA	69630860	69625934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69625993_69626081_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704
100672	chr17	-	1617	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	5	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36149124	36145696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146033_36146106_36146932_36147054_36147166_36147519_36147629_36148888
100673	chr17	+	2065	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	-240	24	240	mono-exon	FALSE	NA	NA	NA	NA	NA	17	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGCGGGCGTCGTGCCTC	NA	False	NA	-1	True	NA	NA	NA	40157267	40159332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159300
100674	chr11	-	303	1	Intergenic	novelGene_2515	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGAGAGAGGGGCACGT	NA	False	NA	NA	False	NA	NA	NA	108902948	108902645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902600_108902900
100675	chrUn_JH584304v1	-	4734	18	Intergenic	novelGene_4595	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	328.471241361225	1	131	7	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGGCCGCCACCTCCCG	NA	False	NA	NA	False	NA	NA	NA	59711	41099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_41125_41972_42090_47436_47676_47921_47997_48579_48654_48762_48944_49049_49969_50092_50275_51406_51539_51644_51725_52282_53770_54335_54480_54720_54868_55111_55249_55464_55702_56985_57152_58563_58836_59591
100676	chr4	+	2798	11	Fusion	ENSMUSG00000078498.6_ENSMUSG00000067919.9	novel	3993	5	NA	NA	-46108	0	multi-exon	TRUE	non_canonical	0	0	junction_1	222.62740172764	31	33	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147060198	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147060315_147107818_147107913_147115003_147115080_147136962_147137048_147140055_147140183_147141715_147143223_147143307_147143380_147144310_147144560_147264612_147265040_147344568_147344583_147418160
100677	chr2	-	2341	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	186	15	33	-7	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	3	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTAACTAGTGCTCCA	3818	False	NA	NA	False	NA	NA	NA	154734669	154713344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
100678	chr18	+	1658	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	-1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	7	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180220_48180307
100679	chrUn_MU069435v1	+	466	1	Intergenic	novelGene_4722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	144	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGGAACCTGGCGCTAAA	NA	False	NA	NA	False	NA	NA	NA	0	466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_500
100680	chr4	+	2222	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	0	multi-exon	FALSE	non_canonical	0	0	junction_1	47.1192341005478	3	83	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447362_147536170_147536264_147661528_147661587_147665698_147665826_147667290_147667431_147668090
100681	chr6	-	3360	13	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	-4	-356	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	86.4382808071105	1	153	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCCAACCCCAAATCACCA	NA	False	NA	NA	False	NA	NA	NA	112673651	112603731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112605486_112621548_112621709_112626555_112626799_112641056_112641112_112642213_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
100682	chr19	-	1241	4	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	23.9211668240122	23	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTTGCAATTTGCAACA	NA	False	NA	NA	False	NA	NA	NA	22705271	22699856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22700850_22702894_22703129_22705043
100683	chr12	-	1472	7	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	1	77	junction_4	2906.83417426359	11	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637445_111637648_111638014_111638199_111638408_111638663
100684	chr6	-	6916	9	NNC	ENSMUSG00000046192.5	novel	3651	13	NA	NA	-163093	-579	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	2.26039266500314	13	14	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCCATATCTGTCTGAAA	NA	False	NA	NA	False	NA	NA	NA	24678159	24445442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_24446242_24449682_24449869_24450602_24450852_24454135_24454313_24461861_24462033_24479142_24479319_24491462_24491674_24492236_24492384_24673359
100685	chrM	-	2549	2	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	32	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	1	True	NA	7	True	NA	NA	NA	3702	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1551_1610
100686	chr6	-	4461	4	Intergenic	novelGene_4118	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	116	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGAAAGTGGGCAGCGT	NA	False	NA	NA	False	NA	NA	NA	10229322	10030983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_10032151_10078407_10079131_10148215_10149874_10228409
100687	chr3	+	5592	11	NIC	ENSMUSG00000027763.14	novel	5655	10	NA	NA	-8	-20	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	36.6727419209418	29	66	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGAAATTGCCCTAATAAAA	NA	False	NA	NA	False	NA	NA	NA	60408677	60537132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_60408845_60436176_60437226_60503014_60503186_60511114_60511316_60520683_60520942_60522103_60522158_60523040_60523195_60528843_60528880_60529566_60529662_60532544_60532620_60533800
100688	chr4	+	3952	8	Intergenic	novelGene_2097	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	164.426151155081	1	52	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACAAGGTTGACTTGG	NA	False	NA	NA	False	NA	NA	NA	146426575	146805998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426724_146435241_146435318_146797295_146797381_146800390_146800518_146802050_146802662_146802758_146803848_146803931_146804184_146804434
100689	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
100690	chr8	+	3059	7	NIC	ENSMUSG00000005410.7	novel	2653	16	NA	NA	-1645	-2	intron_retention	FALSE	canonical	3	1485	junction_2	102.296410276977	2	41	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGATAGTAGTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	75845882	75854314	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_75845997_75847407_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75852993_75853850
100691	chr4	-	3311	13	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	-57	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	354.349981970117	11	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGCCACTCACATTTA	3686	False	NA	NA	False	NA	NA	NA	135069886	135047798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068367_135069501
100692	chr6	-	3161	18	Antisense	novelGene_ENSMUSG00000034269.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	79	17	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGGGACTAGGGCTGCGTG	NA	False	NA	NA	False	NA	NA	NA	113105429	113054448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113054672_113081893_113082082_113082875_113083101_113086382_113086575_113086842_113086952_113087334_113087485_113087824_113087882_113088314_113088496_113091802_113092045_113092485_113092638_113092965_113093089_113093745_113093848_113094326_113094577_113095216_113095305_113096375_113096633_113097799_113098120_113098526_113098770_113105370
100693	chr7	-	1422	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	36	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	8785.81723219303	6	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398129	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396710_126396810_126396949_126397994
100694	chr8	-	4308	22	NNC	ENSMUSG00000038225.16	novel	3943	14	NA	NA	6	14249	intron_retention	FALSE	non_canonical	0	0	junction_1	69.3376830137429	24	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGGAGGGACAGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	47070229	47014379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47014659_47014810_47014872_47015450_47015680_47021643_47021718_47023006_47023113_47025784_47025865_47026466_47026514_47026881_47026945_47029259_47029416_47031287_47032202_47034472_47034520_47034602_47034770_47039377_47039487_47039641_47039732_47043249_47043339_47045641_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
100695	chr19	-	3676	25	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	72	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTTAAAGGCCTTGAGC	NA	False	NA	NA	False	NA	NA	NA	10607182	10585759	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10585835_10588060_10588289_10589001_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599868_10600703_10600796_10600887_10601000_10602084_10602210_10602528_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10604849_10605021_10605123_10605229_10605788_10605910_10606439_10606991_10607045
100696	chr3	+	5782	1	Intergenic	novelGene_3138	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	139	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGGTCATTAGCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	78953538	78959320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_78953500_78959300
100699	chr5	+	3848	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-223	intron_retention	FALSE	canonical	0	0	junction_3	746.610491934494	2	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTCTTTAATTTTAACT	NA	False	NA	NA	False	NA	NA	NA	108208603	108256647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
100700	chr15	+	1881	11	NNC	ENSMUSG00000046434.17	novel	1918	11	NA	NA	-5	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	5488.87891012363	26	88	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	103148888	103153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149621_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151502_103152051_103152208_103152385_103152456_103152682
100701	chr5	+	2889	18	NNC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	4	74	intron_retention	FALSE	canonical	0	0	junction_2	752.858046881565	1	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCATGCATGGTGTTAGA	NA	False	NA	NA	False	NA	NA	NA	108213598	108255103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108217027_108217230_108220418_108220656_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
100702	chr11	-	1630	4	ISM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	14714	-1	14714	1	3prime_fragment	FALSE	canonical	3	2258	junction_1	47.7935374524864	1	101	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTGTGTGTCAGTGCC	NA	False	NA	NA	False	NA	NA	NA	59104274	59102236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165
100703	chr17	+	2052	1	Intergenic	novelGene_184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	75	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGGAGCTGTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
100704	chr15	-	1424	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	20.5	10	63	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAACAAGACCGTTTTCT	9852	False	NA	NA	False	NA	NA	NA	22705038	22699827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700670_22702717_22703106_22704844
100705	chr2	+	2013	4	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	256	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6709.76315197158	13	47	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTTTTGGACTGGGGT	NA	False	NA	NA	False	NA	NA	NA	29952120	29962576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958329_29960452_29960600_29960930
100706	chr11	+	1016	3	NNC	ENSMUSG00000035530.14	novel	447	3	NA	NA	-20	-12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6110.5	3	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTCAGAAACGCCTGATG	4760	False	NA	NA	False	NA	NA	NA	100211513	100212910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100211656_100211773_100211880_100212142
100707	chr11	+	2425	11	Antisense	novelGene_ENSMUSG00000025130.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	56	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCAGTTGGGTTGGCGCC	6811	False	NA	NA	False	NA	NA	NA	120451128	120463653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120452086_120452985_120453072_120453187_120453372_120453480_120453602_120454030_120454232_120454428_120454557_120454643_120454729_120458733_120458881_120458998_120459134_120462346_120462556_120463481
100709	chr13	+	5776	9	Antisense	novelGene_ENSMUSG00000052180.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	110	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTCACTCCCAGGCCTC	8529	False	NA	NA	False	NA	NA	NA	34046203	34089189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34046559_34046618_34047584_34049481_34053094_34064604_34064763_34077788_34077930_34079251_34079370_34081326_34081479_34083243_34083423_34089093
100710	chr4	+	2647	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	7	182330	multi-exon	FALSE	non_canonical	0	0	junction_1	157.813141576743	2	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147216501	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147390101_147390233_147393100_147393251_147409230_147409335_147413438_147413566_147415724_147415863_147416780_147418091_147600209
100711	chr14	+	1696	12	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	1	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	785.285524743644	2	18	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATATGTTTTGAGAAAA	NA	False	NA	NA	False	NA	NA	NA	30271138	30295554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280798_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30292927_30295354
100712	chr7	+	4570	9	Fusion	ENSMUSG00000100254.2_ENSMUSG00000099481.7	novel	2298	11	NA	NA	39	-45	intron_retention	FALSE	canonical	3	7	junction_1	32.312681334114	9	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGTTTCCTAAGTGAATCT	NA	False	NA	NA	False	NA	NA	NA	101715003	101732924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr7_+_101715150_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101729812_101730689_101730818_101731247
100713	chr9	+	1238	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1	-152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	8105.10138739794	3	46	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCCTTGTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	64080657	64085796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082661_64083353_64083499_64084222_64084353_64084602_64084654_64085002_64085087_64085178_64085300_64085504
100714	chr11	-	1615	9	Antisense	novelGene_ENSMUSG00000020402.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCAGATCGCGGCGGCGC	4391	False	NA	NA	False	NA	NA	NA	52280013	52251888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_52251978_52265123_52265195_52265743_52265794_52267216_52267368_52267471_52267527_52274675_52274905_52276407_52276577_52278254_52278299_52279256
100715	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
100716	chr7	-	1386	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	113	12	0	-10	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	250	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAAGGGGGAGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	126398313	126394417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
100717	chr4	-	2979	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-72	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	111.162887242101	1	79	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	9451	False	NA	NA	False	NA	NA	NA	147894317	147838436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845816_147891546_147891641_147893953
100718	chr18	+	7754	18	Antisense	novelGene_ENSMUSG00000003778.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	228	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGTTGGCGACAGACGCGG	NA	False	NA	NA	False	NA	NA	NA	34734247	34757627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34735303_34735726_34735832_34736761_34736937_34737649_34737722_34737885_34737977_34738526_34738741_34739471_34739520_34739727_34739821_34740090_34740547_34740829_34741111_34741471_34743001_34743460_34743677_34744180_34746154_34746267_34746349_34747499_34747626_34747801_34747851_34749717_34749787_34756506
100719	chr15	+	3257	18	NNC	ENSMUSG00000022394.15	novel	4645	16	NA	NA	-9	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	222.041097851159	1	119	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTGATGATATCAGATG	NA	False	NA	NA	False	NA	NA	NA	81548145	81572513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_81548226_81551359_81551592_81552818_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140_81571826_81572002
100720	chr2	-	1255	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-182	-73	182	mono-exon	FALSE	NA	NA	NA	NA	NA	27	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824694	28823439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
100722	chr8	-	5733	14	NNC	ENSMUSG00000038506.14	novel	2955	6	NA	NA	-23121	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	18.9027407924739	9	71	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	NA	False	NA	NA	NA	13361252	13305963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_13307977_13308946_13309044_13321589_13321721_13328516_13328686_13330908_13331126_13337803_13338387_13341655_13342170_13342707_13342890_13344845_13345036_13345977_13346107_13348210_13348304_13353725_13353913_13358346_13358465_13360142
100723	chr4	+	3352	16	Fusion	ENSMUSG00000085525.8_ENSMUSG00000067919.9_ENSMUSG00000063245.12_ENSMUSG00000086147.3	novel	387	3	NA	NA	6	199352	multi-exon	TRUE	non_canonical	0	0	junction_1	19.9555060627944	2	83	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	146206906	147344603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146428065_146428160_146429857_146429973_146697966_146698071_146700020_146700119_146739308_146739414_146740256_146740384_146741834_146741973_146742638_146742804_146802587_146803245_146804671_146804788_147073950_147074128_147075130_147075871_147144970_147145087_147344456
100724	chr17	+	4219	14	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	47	-4	intron_retention	FALSE	canonical	3	1446	junction_1	277.354578347244	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTGGTGGCGCACGTCT	546	False	NA	NA	False	NA	NA	NA	56610446	56630482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
100725	chr17	-	3961	7	NIC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	-18	-1484	intron_retention	FALSE	canonical	3	548	junction_6	43.8545575992077	6	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGATGGTGTATATGTGTG	NA	False	NA	NA	False	NA	NA	NA	56597529	56585959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56593296_56593447_56593647_56594793_56594877_56597453
100727	chr7	-	1349	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	155	7	10	-5	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	5	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGAGTCTGTTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	126398271	126394412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
100728	chr4	+	3859	12	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-86279	182156	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	133.316996244302	3	93	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146500204	146806008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500419_146500587_146500637_146516904_146516986_146518646_146518740_146597241_146597335_146616526_146616611_146800390_146800518_146802050_146802609_146802693_146803250_146803332_146803647_146803814_146804170_146804673
100729	chr1	+	3870	9	FSM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	52	2816	52	-687	multi-exon	FALSE	canonical	3	399	junction_6	47.8289595851718	2	145	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTATTTGAACCTGGGAT	NA	False	NA	NA	False	NA	NA	NA	127701952	127732982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898
100730	chr2	-	7789	7	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-86	189143	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	23.5118173596929	2	72	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAACTTCCAACCTAAAG	NA	False	NA	NA	False	NA	NA	NA	177016186	176817169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176817248_176872145_176873180_177000859_177005497_177005644_177006909_177007076_177007703_177008856_177008918_177016097
100732	chr4	-	1263	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-70	-191	-70	191	mono-exon	FALSE	NA	NA	NA	NA	NA	9	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740976	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
100733	chr7	+	3636	21	NNC	ENSMUSG00000054083.9	novel	3040	21	NA	NA	2302	73735	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	101	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGGGGAAGAAGGGGCAT	NA	False	NA	NA	False	NA	NA	NA	28592678	28666723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28593813_28593925_28594087_28594858_28594935_28595508_28595661_28596300_28596480_28597272_28597411_28597495_28597676_28597762_28597907_28598046_28598156_28601302_28601459_28603971_28604116_28604649_28604883_28606398_28606495_28610921_28611003_28611665_28611746_28612801_28612879_28614634_28614726_28615584_28615669_28618093_28618216_28618377_28618494_28666640
100734	chr4	-	712	6	NNC	ENSMUSG00000047675.16	novel	860	6	NA	NA	-49	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4923.68457153786	1	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGCTGTCTAGGTGTT	NA	False	NA	NA	False	NA	NA	NA	117013330	117011035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117011190_117011526_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
100735	chr16	+	3874	1	FSM	ENSMUSG00000083405.2	ENSMUST00000119947.2	1090	1	-1053	-1731	-1053	1731	mono-exon	FALSE	NA	NA	NA	NA	NA	11	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGACTGATAGTCATCTT	NA	False	NA	NA	False	NA	NA	NA	37701850	37705724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_37701800_37705700
100736	chr4	+	3166	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	20.3359538848849	16	35	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	924	False	NA	NA	False	NA	NA	NA	145237358	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145239546_145239640_145299305_145300051_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
100737	chr17	-	1605	8	NNC	ENSMUSG00000024197.11	novel	3645	8	NA	NA	-18	-2004	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	284.748940619054	3	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTAGTCTGTCATCCTGT	NA	False	NA	NA	False	NA	NA	NA	56597529	56586479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591413_56593197_56593245_56593447_56593647_56594793_56594877_56597453
100738	chr2	+	2763	15	Intergenic	novelGene_2771	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	85	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCGGCGGCCTCTCCCAG	NA	False	NA	NA	False	NA	NA	NA	165647268	165700075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_165647298_165649438_165649856_165654268_165654784_165657240_165657383_165662454_165662609_165670127_165670610_165675228_165675355_165676813_165676890_165679199_165679255_165680731_165680820_165681917_165682013_165684682_165684798_165687940_165688160_165693919_165694069_165699974
100739	chr5	-	3815	18	NIC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	0	231	intron_retention	FALSE	canonical	3	356	junction_17	76.9143684184181	117	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTGTGAGTGGGTGT	NA	False	NA	NA	False	NA	NA	NA	31337253	31314556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31331434_31331575_31331840_31337227
100740	chrX	-	4770	3	Antisense	novelGene_ENSMUSG00000095398.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	104	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAATTTAATGTTATCCA	NA	False	NA	NA	False	NA	NA	NA	54667568	54552156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_54552709_54663191_54664174_54664332
100741	chr17	-	2472	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	2	-5	intron_retention	FALSE	non_canonical	0	0	junction_8	3295.6876080721	101	35	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45884195	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882082_45882357_45882546_45882690_45882838_45884092
100742	chr5	+	4392	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	1	intron_retention	FALSE	canonical	0	0	junction_5	743.340998360611	1	63	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTAATGAGTTTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	108208603	108256871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235082_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
100743	chrM	+	692	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	150	-161	-150	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTCTAGTATTAATAAATAT	-11	True	NA	NA	False	NA	NA	NA	7765	8457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8500
100744	chr17	-	1414	9	NIC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	2	22	intron_retention	FALSE	canonical	3	143	junction_4	14.1504196050859	5	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGACCATCTGGGTTAAGA	NA	False	NA	NA	False	NA	NA	NA	25459088	25453268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_25453697_25453781_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
100745	chr5	-	4927	2	NNC	ENSMUSG00000000568.16	novel	425	2	NA	NA	2606	24	intron_retention	FALSE	canonical	0	0	junction_1	0	4	92	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGTGAAGAAGATAATGGAAA	NA	False	NA	NA	False	NA	NA	NA	100121804	100112577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100114303_100118602
100746	chr14	-	1903	4	ISM	ENSMUSG00000025558.20	ENSMUST00000211803.2	3667	18	42093	7	34375	-7	3prime_fragment	FALSE	canonical	3	52	junction_3	9.2736184954957	2	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAGGACAGGGTACCT	9948	False	NA	NA	False	NA	NA	NA	121787763	121779532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_121781038_121783377_121783517_121783967_121784069_121787605
100747	chr2	-	4780	8	NNC	ENSMUSG00000068479.6	novel	4198	7	NA	NA	37	1271	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	159.593616567141	2	149	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTAAAAAATGCCAATGCA	NA	False	NA	NA	False	NA	NA	NA	121337109	121321120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_121323360_121324011_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
100748	chrY	+	2782	6	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	-1022	5937	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	806.8	186	48	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	8643	False	NA	NA	False	NA	NA	NA	90800697	90833671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrY_+_90800782_90800820_90801302_90801384_90801915_90803039_90804081_90804157_90804687_90833554
100749	chr4	-	2268	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	17	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	107.652691749052	3	32	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994030	146912352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913192_146914367_146914412_146976287_146977116_146978205_146978333_146982168_146982273_146983728_146983804_146991975_146992072_146993875
100750	chr11	+	1969	18	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	373.692683167984	2	47	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	NA	False	NA	NA	NA	115455301	115474732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460951_115468974_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473910_115474039_115474151_115474254_115474546
100751	chr5	+	387	1	Intergenic	novelGene_923	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
100752	chr12	-	1506	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7551	junction_5	335.592345297419	280	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111638014_111638199_111638408_111638663
100753	chr7	+	1053	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	-26	0	19	0	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	407	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	5982	False	NA	NA	False	NA	NA	NA	45367554	45370252	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
100754	chr16	-	564	1	Intergenic	novelGene_3698	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	109	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100755	chr2	-	1256	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-65	-191	-65	191	mono-exon	FALSE	NA	NA	NA	NA	NA	10	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	28824686	28823430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
100756	chr17	-	2635	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-5	intron_retention	FALSE	canonical	2	5	junction_9	3334.61930009157	3490	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACAGTCCTGCTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878705	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882859_45884092
100757	chr17	-	676	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	277	228	mono-exon	FALSE	NA	NA	NA	NA	NA	21	7	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGACATCTAAGGGCATCA	NA	False	NA	NA	False	NA	NA	NA	40159441	40158765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40158800_40159400
100760	chrM	-	1925	1	Antisense	novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS_novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	32	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCCCTCTTTTGGCTATA	77	True	NA	NA	False	NA	NA	NA	3466	1541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1500_3500
100761	chr7	+	851	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	382	-1	382	1	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396776	51397627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396800_51397600
100762	chr7	-	1398	6	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	45	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGAGTTTGTCTTCCAT	NA	False	NA	NA	False	NA	NA	NA	46505051	46498449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46498513_46499599_46499789_46500229_46500482_46501299_46501417_46503404_46503529_46504398
100763	chr3	+	1017	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1849.71528619947	2	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3597	False	NA	NA	False	NA	NA	NA	88486954	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491190_88494167_88494250_88495187
100764	chr16	+	564	1	Intergenic	novelGene_3699	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
100765	chr5	-	3175	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	0	224	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	203.393312343776	2	114	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAGAGCACTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	31337253	31314563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315593_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325224_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
100766	chr8	-	3036	8	NIC	ENSMUSG00000004319.16	novel	4099	13	NA	NA	50	-797	intron_retention	FALSE	canonical	3	96	junction_6	57.4292821562275	1	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCACTTTTGGTATCAA	NA	False	NA	NA	False	NA	NA	NA	61436223	61382125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
100767	chr4	-	1188	3	Intergenic	novelGene_2182	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	5	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGACCTGCGCCGGCAACTG	NA	False	NA	NA	False	NA	NA	NA	155816482	155789575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_155789916_155799915_155800063_155815781
100768	chr16	-	5539	6	Antisense	novelGene_ENSMUSG00002076438.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	109	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGCAGGGTGTGTGTGTG	6101	False	NA	NA	False	NA	NA	NA	84615466	84570923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_84571440_84598449_84598525_84603720_84603828_84606226_84606381_84609782_84612155_84613151
100769	chr4	+	2490	4	Intergenic	novelGene_2064	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_3	32.8261413442938	3	27	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	146365083	146393557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146384326_146384431_146390758_146391839_146392426
100770	chr5	-	2352	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	6	260	6	multi-exon	FALSE	canonical	3	916	junction_1	0	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
100771	chr15	+	2270	14	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	55	548	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	236.676195046682	2	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGAATTTACCTGAATAAA	NA	False	NA	-39	True	NA	NA	NA	101982353	102004182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994896_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
100772	chr1	-	867	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	55	-31	55	31	mono-exon	FALSE	NA	NA	NA	NA	NA	2	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAACAACAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837350	86836483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_86836500_86837400
100773	SIRV6	+	1493	10	NNC	SIRV6A	novel	1528	10	NA	NA	7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	10166.6760983563	1	73	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGAGTATACTTAGTTCA	NA	False	NA	NA	False	NA	NA	NA	1094	11832	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1187_1468_1531_1640_1736_1845_2027_2470_2625_2740_2829_3106_3165_10724_10784_11031_11109_11205
100774	chr2	+	2288	7	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	19950	15	-108	-15	3prime_fragment	FALSE	canonical	3	2736	junction_1	195.581753295706	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAACACATTGTAGTGTC	NA	False	NA	NA	False	NA	NA	NA	162916556	162926593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
100775	chr7	+	1440	3	Genic_Genomic	ENSMUSG00000110279.2	novel	778	3	NA	NA	507	193	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGGGCCGCTCCCGGCTT	NA	False	NA	NA	False	NA	NA	NA	44771847	44773761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_44771985_44772254_44772386_44772589
100776	chr19	+	4576	4	Intergenic	novelGene_1228	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1615.97469727166	10	110	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCCCGAGTAGCTGAGTA	1586	False	NA	NA	False	NA	NA	NA	22700244	22705264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763_22702903_22702952_22704880_22705059
100777	chr17	+	1512	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	239	98	239	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	15	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	7	True	NA	NA	NA	40157482	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157500_40159000
100778	chr18	+	2119	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	346	6	83	-3	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	302	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAATGTGTCTTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	77861774	77870563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
100779	chrM	+	2074	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-250	0	250	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGATCCCCAAGTCTCTG	-4	True	NA	4	True	NA	NA	NA	11741	13815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13800
100780	chr16	-	564	1	Intergenic	novelGene_3700	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	200	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
100781	chr17	+	2050	1	Intergenic	novelGene_183	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGGAGGAGCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	40153887	40155937	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
100782	chr14	-	2759	14	ISM	ENSMUSG00000040472.16	ENSMUST00000228899.2	2153	15	-25	-429	-4	1	intron_retention	FALSE	canonical	3	306	junction_10	93.090908040277	3	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAAGCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	55959663	55953332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300
100783	chr7	-	1361	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	71	79	-13	-77	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	6	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGTGTGCGGTGTTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
100784	chr2	+	6475	22	NIC	ENSMUSG00000027624.21	novel	6251	22	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	39.9894543921899	255	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7596	False	NA	NA	False	NA	NA	NA	156262783	156385134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352676_156352802_156355947_156356131_156366800_156367209_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
100785	chr8	+	3089	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	1	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	976.257440432594	5	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760548	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760577_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776464_111777131_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
100786	chrX	-	1517	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-8	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1329.68574764867	1	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAGCAAAAAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	135642033	135633708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135633893_135634159_135635251_135636294_135636372_135640553_135640644_135641958
100787	chr19	+	3465	3	Antisense	novelGene_ENSMUSG00000092008.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	50	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGCTACCTTATTAGG	NA	False	NA	NA	False	NA	NA	NA	39810000	39889198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_39812872_39819056_39819101_39888648
100788	chr4	+	2778	7	Intergenic	novelGene_2066	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	42.6132478096764	3	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146365089	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146375377_146375458_146384326_146384431_146388486_146388614_146390758_146391620_146391956_146392219_146392386
100789	chr11	+	1160	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	6	-172	-6	multi-exon	FALSE	canonical	3	35417	junction_1	0	4	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATATATGGTGTCACTTG	NA	False	NA	NA	False	NA	NA	NA	62442329	62444033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
100790	chr16	+	564	1	Intergenic	novelGene_3701	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1701	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
100791	chr17	+	3322	17	NNC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	663.645398419781	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1387	False	NA	NA	False	NA	NA	NA	56611287	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619182_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
100792	chr4	+	2833	4	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4877	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	75.7935793234933	24	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147395007	147418187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724
100793	chr15	+	2792	8	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	15158	5	2907	-5	3prime_fragment	FALSE	canonical	3	809	junction_1	45.8066032135017	1	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGGTTAATGTTGCAG	NA	False	NA	NA	False	NA	NA	NA	101997365	102005603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
100794	chr10	-	1300	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1449.17098046167	2	51	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGAGTTTGTTATTT	NA	False	NA	NA	False	NA	NA	NA	90959825	90952652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959566_90959773
100795	chr9	-	268	1	Antisense	novelGene_ENSMUSG00000035202.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	5	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGAAGGATCGTGAGGCC	NA	False	NA	NA	False	NA	NA	NA	123291252	123290984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_123291000_123291300
100796	chr17	+	3412	11	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1732	855	1706	-855	internal_fragment	FALSE	canonical	3	15	junction_6	15.5244967712322	12	51	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGGCGGGGAGGAGGAA	NA	False	NA	NA	False	NA	NA	NA	57184208	57195049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440
100797	chr1	-	631	2	Genic_Genomic	ENSMUSG00000084106.5	novel	891	1	NA	NA	185	30	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	26	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAACAACAACAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	86837220	86836484	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr1_-_86836884_86836988
100798	chr5	-	5245	9	NNC	ENSMUSG00000029405.17	novel	4182	11	NA	NA	-21	6	intron_retention	FALSE	non_canonical	0	0	junction_6	570.913180242846	6	94	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATGTCCCTAATTTAA	NA	False	NA	NA	False	NA	NA	NA	92231538	92200016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216359_92218215_92218298_92221018_92221138_92231387
100799	chr17	+	1826	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	-1	24	1	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGAGACTGTGGAGGAGCG	NA	False	NA	-1	True	NA	NA	NA	40157267	40159093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159100
100800	chr5	-	1652	4	NNC	ENSMUSG00000029580.15	novel	1242	5	NA	NA	362	-8	intron_retention	TRUE	non_canonical	0	0	junction_2	2013.84011281929	5	81	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	4023	False	NA	NA	False	NA	NA	NA	142891214	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142889990_142890371_142890810_142890987
100801	chr1	+	2343	21	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	1669	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	290.413240056303	8	21	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	977	False	NA	NA	False	NA	NA	NA	171928971	171949892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942620_171944549_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946530_171949611
100802	chr8	-	559	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	-44	-59	-44	59	mono-exon	FALSE	NA	NA	NA	NA	NA	6	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATCTAAAGAACATTGTAC	NA	False	NA	NA	False	NA	NA	NA	107989924	107989365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_107989400_107989900
100803	chr4	+	2968	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-88	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	73.8190354854356	5	106	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390042	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147400358_147400439_147409230_147409335_147413438_147413566_147415724
100804	chrM	+	2138	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-314	0	314	mono-exon	FALSE	NA	NA	NA	NA	NA	3	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCCCCCCTAAATAAAT	-4	True	NA	4	True	NA	NA	NA	11741	13879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13900
100805	chr11	-	1649	4	NNC	ENSMUSG00000016559.15	novel	1993	4	NA	NA	11	-330	at_least_one_novel_splicesite	FALSE	canonical	1	291	junction_1	6154.77088661037	4	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915319	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914359_115914450_115914605_115914707_115914846_115915204
100806	chr4	-	3563	7	Antisense	novelGene_ENSMUSG00000096354.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	110	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGAAATTCCTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	147477601	147314729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147314896_147316809_147316899_147400356_147400433_147469668_147469757_147472776_147472907_147474018_147474089_147474657
100807	chr10	-	3373	10	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-25085	-42	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	28.3095760965337	1	43	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCCCCGAAGCCAATTT	NA	False	NA	NA	False	NA	NA	NA	62675405	62648442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649192_62649302_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954
100808	chr5	+	3369	25	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	38	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCAACGTGGCAGCCGCA	NA	False	NA	NA	False	NA	NA	NA	100511686	100564068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100511807_100513589_100513652_100513762_100513854_100516152_100516210_100521236_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533987_100534063_100536389_100536476_100538620_100538687_100540247_100540490_100540722_100540875_100541061_100541221_100543657_100543760_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555136_100555887_100555973_100563961
100809	chr17	-	1041	1	FSM	ENSMUSG00000117438.2	ENSMUST00000234808.2	885	1	-78	-78	-78	78	mono-exon	FALSE	NA	NA	NA	NA	NA	2	74	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAAAGAACAATT	NA	False	NA	NA	False	NA	NA	NA	82718326	82717285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_82717300_82718300
100811	chr15	-	1268	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	14280.7902580726	2	65	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCCACATTTCTT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963030_79963923_79964042_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966779_79967524
100812	chr9	-	3433	23	NNC	ENSMUSG00000036777.9	novel	4605	24	NA	NA	40	124	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	154.180746136925	31	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTAGAGACACACTCTGTG	7223	False	NA	NA	False	NA	NA	NA	22300444	22245324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_22245471_22249227_22249336_22250297_22250385_22260542_22260597_22262215_22262354_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
100813	chr10	+	3019	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1898.57666343468	31304	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81013970_81014024_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
100814	chr14	+	5187	21	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	67	48124	intron_retention	FALSE	non_canonical	0	0	junction_9	269.623886182215	7	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGGGAGAAACCCAGGCCG	NA	False	NA	NA	False	NA	NA	NA	54598364	54655254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774_54607344_54607549_54607668_54610398_54610546_54611297_54611398_54611672_54611775_54612004_54612128_54615221_54615367_54616451_54616577_54645957_54646504_54649036_54649104_54651336_54651475_54654049_54654231_54654947
100815	chr4	+	3576	7	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	12	41582	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	153.781952416039	19	126	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGCAATTATGTCCATCC	NA	False	NA	NA	False	NA	NA	NA	146206912	146256586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207052_146209452_146209546_146240246_146240316_146250678_146250737_146251579_146251707_146253158_146254071_146254408
100816	chr6	+	8036	4	ISM	ENSMUSG00000098285.3_ENSMUSG00000038538.18	ENSMUST00000159925.2	5521	5	6314	-5847	-597	1033	3prime_fragment	FALSE	canonical	3	57	junction_3	9.89949493661167	26	84	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTAAACATACCATATTTG	NA	False	NA	NA	False	NA	NA	NA	38467341	38485361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_38468867_38475622_38475855_38476121_38476212_38479172
100817	chr4	+	2916	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-232	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.443251190051	50	84	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAAAGAGTATCTGGC	924	False	NA	NA	False	NA	NA	NA	145237358	145265526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145239546_145239729_145257381_145257486_145261385_145261513_145263160
100818	chr17	-	3790	11	NNC	ENSMUSG00000096780.8	novel	2426	9	NA	NA	2990	8350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	400.957154818317	8	40	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGTCAGGCC	NA	False	NA	NA	False	NA	NA	NA	6713504	6697572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699319_6702404_6702530_6702867_6702945_6703293_6706243_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6713365
100819	chr1	-	2261	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	162	0	162	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	3563	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4617	False	NA	NA	False	NA	NA	NA	55127021	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
100820	chrX	-	810	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	56	0	-14	0	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	15	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	NA	False	NA	NA	NA	135116206	135114720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135115333_135115652_135115730_135116085
100821	chr18	-	2128	9	NNC	ENSMUSG00000037013.18	novel	4153	10	NA	NA	0	-374	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	425.879017445096	1	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGCTGTATCCTCACAG	NA	False	NA	NA	False	NA	NA	NA	14815823	14759085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770494_14774053_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
100822	chrUn_JH584304v1	-	2141	9	Intergenic	novelGene_4684	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	26	junction_4	344.761489112401	4	51	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGATGTGTTGTCCTGG	NA	False	NA	NA	False	NA	NA	NA	59695	53139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53833_54318_54480_54720_54868_55111_55431_55511_55702_56985_57152_57410_57500_58563_58836_59591
100823	chr5	-	3028	15	NNC	ENSMUSG00000106864.4	novel	4718	18	NA	NA	24	120	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	211.313977149585	3	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATGGCTCACAAGAAACAC	NA	False	NA	NA	False	NA	NA	NA	31337229	31314667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315058_31317094_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31336590
100824	chr12	+	1054	6	Antisense	novelGene_ENSMUSG00000001270.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1101	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGCCGCTCCTCAATAAT	7744	False	NA	NA	False	NA	NA	NA	111635796	111637913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_111636181_111636263_111636455_111636600_111636716_111637302_111637479_111637648_111637781_111637857
100825	chr2	-	2609	1	Intergenic	novelGene_2633	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTATGTCCCCATGTTTACT	NA	False	NA	NA	False	NA	NA	NA	59001597	58998988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_58999000_59001600
100826	chrX	-	4710	3	Genic_Genomic	ENSMUSG00000085396.8	novel	5555	20	NA	NA	-15017	18613	multi-exon	TRUE	non_canonical	0	0	junction_1	0	18	110	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATGTCCATGCTTCCCA	NA	False	NA	NA	False	NA	NA	NA	49695853	49685658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_49685669_49690927_49692022_49692247
100827	chr4	+	2465	6	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	39.3517471022571	4	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147637733	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661481_147661587_147665716_147665826_147667290_147668249_147668589
100828	chrX	-	679	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	2	-30	2	30	mono-exon	FALSE	NA	NA	NA	NA	NA	1790	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGCCCAAGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	151693149	151692470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693100
100829	chr17	-	4759	7	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	101	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAATCCGAGCCGGGCGT	NA	False	NA	NA	False	NA	NA	NA	56630454	56620851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56622314_56622396_56622505_56622774_56622881_56624002_56625382_56627158_56627281_56627394_56627542_56629019
100830	chr2	-	2425	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	114	3	10	-3	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	3	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCCATTGCTTTTGTGT	3746	False	NA	NA	False	NA	NA	NA	154734741	154713332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
100832	chr6	+	3166	5	NIC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	5412	0	intron_retention	FALSE	canonical	3	2373	junction_4	274.798562587216	10	59	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	NA	False	NA	NA	NA	86992396	87005443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_86992684_86996346_86996414_86997700_87000171_87002467_87002643_87005276
100833	chr13	-	2885	4	Genic_Genomic	ENSMUSG00000113311.2	novel	661	2	NA	NA	-2303	4491	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGCCCGCGAGGCTCC	6693	False	NA	NA	False	NA	NA	NA	74557159	74547810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_74547911_74553896_74554023_74554221_74554281_74554559
100834	chr4	+	3070	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000070605.5	novel	314	3	NA	NA	-2	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	36.9712866026847	3	63	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146033879	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146033904_146206938_146207223_146207708_146207846_146209452_146209546_146291416_146291514_146368119_146368209_146384369_146384431_146388486_146388614_146390758_146390897_146391310_146392124_146392460_146393458_146552638
100835	chr4	+	3094	12	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	-31	-5	multi-exon	FALSE	non_canonical	0	0	junction_3	107.523435846323	1	73	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209681	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536264_147538036_147538146_147541451_147541486_147592016_147592098_147595209_147595337_147596801_147597042_147598384_147598925_147599008_147599262_147668146_147668493_147668576
100836	chr5	+	1247	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-173	-72	173	mono-exon	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96009500	96010747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010700
100837	chr11	+	2592	1	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	101	62	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTTGTCAACTGAGGGA	9532	False	NA	NA	False	NA	NA	NA	120467652	120470244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120467700_120470200
100838	chr1	-	6413	2	NIC	ENSMUSG00000026193.16	novel	1190	10	NA	NA	1906	475	intron_retention	FALSE	canonical	3	2564	junction_1	0	20	153	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGACTAAAATTCTCAGG	5480	False	NA	NA	False	NA	NA	NA	71637621	71628780	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_71632395_71634822
100839	chr2	+	2478	10	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	852	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	3578.14906976108	38	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTCTCTTGTTGCTCTA	7481	False	NA	NA	False	NA	NA	NA	75489610	75497317	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495452_75495868
100840	chr5	-	4171	31	NNC	ENSMUSG00000039959.14	novel	7835	31	NA	NA	30	-3623	intron_retention	FALSE	canonical	0	0	junction_25	73.132186256577	2	189	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTGCTTCTGCATCCTA	NA	False	NA	NA	False	NA	NA	NA	135573939	135439011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135440124_135441464_135441574_135443103_135443166_135445823_135445948_135449077_135449184_135450974_135451076_135453395_135453490_135453718_135453778_135455174_135455286_135457353_135457491_135457570_135457679_135458027_135458115_135459044_135459181_135460137_135460282_135460499_135460602_135461903_135461997_135463094_135463184_135463860_135464045_135465290_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480483_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135573790
100841	chr17	+	3965	15	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	46	-10	intron_retention	FALSE	non_canonical	0	0	junction_5	608.327503932558	121	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGGGCAGTGGTGGCGC	545	False	NA	NA	False	NA	NA	NA	56610445	56630476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619421_56619803_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
100842	chr5	-	1952	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	-34	2	-34	-2	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	3	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8855	False	NA	NA	False	NA	NA	NA	142892543	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
100843	chr17	+	1290	2	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	16	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCCAGGTTCTAGATCCA	2525	False	NA	NA	False	NA	NA	NA	36145702	36147115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36146930_36147052
100844	chr14	-	976	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	22	564	22	-564	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTTTTGCTCTGTT	1710	False	NA	NA	False	NA	NA	NA	19873870	19861982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
100845	chr11	-	3424	16	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1071.55122447164	2	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8148	False	NA	NA	False	NA	NA	NA	50216488	50185293	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50185737_50186079_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
100846	chr13	-	2313	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	71	105	-13	-8	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	3	100	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGTGGAAAGCTTTCACA	NA	False	NA	NA	False	NA	NA	NA	100923007	100915262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
100848	chr4	+	1838	6	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	28	256538	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	85.2	16	25	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146033942	146319729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146033978_146058453_146058581_146060726_146060865_146061364_146061885_146062389_146063094_146319415
100849	chr7	-	4176	2	FSM	ENSMUSG00000005610.18_ENSMUSG00000088948.3	ENSMUST00000161158.2	599	2	-2931	-646	559	-14	multi-exon	FALSE	canonical	3	6561	junction_1	0	27	45	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGATACTTGATGTAGT	NA	False	NA	NA	False	NA	NA	NA	110676399	110671152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_110671965_110673035
100850	chr2	+	1093	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11385	31	multi-exon	FALSE	non_canonical	0	0	junction_1	0	154	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACCCCAGCAAGGACAC	NA	False	NA	NA	False	NA	NA	NA	11413649	11426062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
100851	chr17	+	478	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1218	153	1218	-153	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTACACACCGCCCGTCG	NA	False	NA	61	True	NA	NA	NA	40158461	40158939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40158500_40158900
100852	chr12	+	2203	9	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.64379783497	94	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGAAGTACAATTATTGA	2865	False	NA	NA	False	NA	NA	NA	109612563	109628150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109617443_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
100853	chr11	-	3476	15	NNC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	306.122399489792	1	100	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTCTGACTGCTCTG	NA	False	NA	NA	False	NA	NA	NA	95201041	95165089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196912_95197013_95200860
100854	chr18	-	1888	14	NNC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1470.54710665773	1	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTATGGTCTGACATCC	NA	False	NA	NA	False	NA	NA	NA	64649577	64633287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643555_64644855_64644949_64645054_64645121_64648396_64648477_64649486
100855	chr19	-	1925	12	ISM	ENSMUSG00000025006.19	ENSMUST00000224227.2	2785	22	111463	37942	-21	2939	internal_fragment	FALSE	canonical	3	26	junction_8	18.6976818291767	8	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCCCTTACACAAATTCA	NA	False	NA	NA	False	NA	NA	NA	40390732	40337833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40365088_40365461_40370964_40371078_40381831_40381961_40386985_40387055_40390701
100856	chrX	+	2944	23	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	324	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	755.780325773598	8	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCCCAGTCCTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	20529169	20548768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536513_20538013_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
100857	chr1	+	953	4	NNC	ENSMUSG00000026238.15	novel	768	4	NA	NA	90	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	11346.4749983812	1	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTAACAATGGTGTCTCA	NA	False	NA	NA	False	NA	NA	NA	86454618	86458412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454685_86457186_86457279_86457457_86457527_86457686
100858	chrX	-	5067	1	Intergenic	novelGene_4029	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	260	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTACCCAGCTACTCGG	NA	False	NA	NA	False	NA	NA	NA	116231728	116226661	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116226700_116231700
100859	chr4	-	5695	3	Intergenic	novelGene_2112	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	140	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTACAGTGTACTTATGT	135	False	NA	NA	False	NA	NA	NA	146806008	146799985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146803307_146803554_146803979_146804058
100860	chr11	-	434	1	Intergenic	novelGene_2509	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGGACCTGGCATGGA	NA	False	NA	NA	False	NA	NA	NA	108902907	108902473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902500_108902900
100862	chr4	-	504	4	FSM	ENSMUSG00000028234.7	ENSMUST00000138502.2	3706	4	66	3136	66	0	multi-exon	FALSE	canonical	3	6653	junction_2	782.301021914767	289	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCTGGCTTTTGTTCAG	-1	True	NA	NA	False	NA	NA	NA	3835599	3834469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_3834684_3834935_3835010_3835191_3835292_3835483
100863	chr3	+	484	1	Intergenic	novelGene_3066	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	63	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGTTAGATGCAGAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	5925398	5925882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925900
100864	chr4	+	1420	3	NIC	ENSMUSG00000028689.15	novel	1524	9	NA	NA	1	854	intron_retention	FALSE	canonical	3	27	junction_2	23	2	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTGCTTCGAGACCAGCT	5663	False	NA	NA	False	NA	NA	NA	116565812	116568553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_116567003_116567297_116567482_116568507
100865	chr13	+	1193	9	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	748.364007352037	2	19	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	NA	False	NA	NA	NA	49875646	49887743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880750_49887238_49887378_49887504
100866	chr17	-	1098	4	NNC	ENSMUSG00000093516.2	novel	494	2	NA	NA	-219	3030	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	5	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGGTTTCACCTCTCCCT	NA	False	NA	NA	False	NA	NA	NA	35821667	35816943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_35817379_35819997_35820127_35820985_35821037_35821184
100867	chr4	+	2320	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	7	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	3	72	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147447267_147447362_147637752_147637869_147665698_147665826_147667290_147667432_147668090
100868	chr11	-	831	4	NNC	ENSMUSG00000011254.17	novel	1011	6	NA	NA	24	-71	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	52.332271751441	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGTATCCTGTTGGACTA	6336	False	NA	NA	False	NA	NA	NA	45846286	45842075	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_45842459_45843561_45843732_45844882_45845060_45846185
100869	chr11	+	1105	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	17708.5	9	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTAAGCATATATGGTG	NA	False	NA	NA	False	NA	NA	NA	62442329	62444026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443047_62443094
100870	chr5	+	1598	2	Antisense	novelGene_ENSMUSG00000106606.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACCATGGGCTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	83174610	83325052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_83176154_83324997
100872	chr9	+	1621	11	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-423	-5	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	5843.49252160042	12	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTAGGCTGCTTTGTTCC	NA	False	NA	NA	False	NA	NA	NA	64080233	64085943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080265_64080599_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
100874	chr4	-	5382	4	Intergenic	novelGene_1916	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	74	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTTGCATCCGAATCGTG	NA	False	NA	NA	False	NA	NA	NA	108012213	108003313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_108004088_108006006_108007688_108007800_108008013_108009498
100875	chr2	-	1043	6	NNC	ENSMUSG00000027342.15	novel	1518	6	NA	NA	113	-278	at_least_one_novel_splicesite	FALSE	canonical	3	210	junction_2	881.92298983528	4	13	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTTAAAGAATAAGCTCCAA	8338	False	NA	NA	False	NA	NA	NA	132095121	132091359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_132091616_132091693_132091818_132093247_132093359_132093610_132093679_132093822_132093921_132094735
100876	chr16	+	1609	9	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	24	junction_5	733.936039021794	1	23	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929875_22930014_22930252_22930343_22930566_22930647_22931916
100877	chr7	+	4282	26	NIC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	53	-3	intron_retention	FALSE	canonical	0	0	junction_1	278.059205206373	25	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACTTGGTGAGGAGGTCT	2682	False	NA	-55	True	NA	NA	NA	13012813	13045347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
100878	chr8	+	5684	12	FSM	ENSMUSG00000031596.16	ENSMUST00000098816.10	3677	12	24	-2031	8	-1983	multi-exon	FALSE	canonical	1	1	junction_4	2.4528613751331	12	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCTGCCTGTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	41315456	41373124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_41315595_41351973_41352366_41353092_41353249_41355535_41355702_41357482_41357617_41358541_41358765_41361092_41361233_41364031_41364135_41365516_41365723_41366999_41367167_41367956_41368066_41369374
100879	chrUn_JH584304v1	-	1292	1	Intergenic	novelGene_4691	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCAAATTTCACCCGTCT	NA	False	NA	NA	False	NA	NA	NA	54482	53190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_53200_54500
100880	chr8	-	2778	19	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	8	14249	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	72.6988758043058	8	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGGAGGGACAGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	47070227	47014379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47014659_47014810_47014872_47015450_47015680_47021643_47021718_47023006_47023113_47025784_47025865_47026466_47026514_47026881_47026945_47029259_47029416_47031287_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039679_47058176_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
100881	chr4	+	3015	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-27	182482	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	139.614483781707	33	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146586456	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233_146621596_146621885_146622119_146622204_146624091_146806249
100882	chrM	+	1477	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	105	0	-105	mono-exon	FALSE	NA	NA	NA	NA	NA	3	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGACAAGAGAAATAGAGCC	-3	True	NA	22	True	NA	NA	NA	1093	2570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2600
100883	chr4	+	2377	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1902	multi-exon	TRUE	non_canonical	0	0	junction_1	42.3411798395378	1	29	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146206906	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207838_146368113_146368128_146388486_146388614_146390758_146390910_146391691_146392390_146392724_146393429_146552609
100884	chr19	+	3131	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	100	-1456	-15	1456	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	4712	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCATCACTGCCCGGCTT	4160	False	NA	NA	False	NA	NA	NA	41900461	41908555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
100885	chrM	+	1849	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-25	0	25	mono-exon	FALSE	NA	NA	NA	NA	NA	5	45	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGATCACCCAGCTA	-4	True	NA	4	True	NA	NA	NA	11741	13590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13600
100886	chr11	+	1285	7	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCCGCCGCCCGCCGCT	1230	False	NA	NA	False	NA	NA	NA	120469043	120472397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120469532_120469936_120470247_120470342_120470408_120470496_120470573_120470794_120470884_120471013_120471222_120472348
100887	chr3	+	1847	1	FSM	ENSMUSG00000048106.7	ENSMUST00000198527.3	6148	1	2249	2052	2153	-2052	mono-exon	FALSE	NA	NA	NA	NA	NA	1	69	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAAGCTTGGTCTATCGT	NA	False	NA	NA	False	NA	NA	NA	19951298	19953145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_19951300_19953100
100888	chr5	+	4417	3	Antisense	novelGene_ENSMUSG00000045078.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	91	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTCGAGCTTCTTCCTG	NA	False	NA	NA	False	NA	NA	NA	142990675	142995227	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142991424_142991471_142991929_142992015
100889	chrM	+	847	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	107	1	107	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	2	False	NA	-2	True	NA	NA	NA	176	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_200_1000
100890	chr7	-	3963	20	NIC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	0	intron_retention	FALSE	canonical	3	4823	junction_7	529.664128144109	10111	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682213	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_110671965_110673035_110673457_110673546_110673752_110673886_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
100891	chr13	-	2710	4	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7312	964	intron_retention	FALSE	canonical	3	55	junction_2	9.53356643071673	64	73	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	1882	False	NA	NA	False	NA	NA	NA	66439277	66427985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66430404_66431569_66431631_66431830_66431958_66439173
100892	chr1	+	2636	1	ISM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	24024	3976	23171	-3976	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCAAAGGTTCCTCCCA	NA	False	NA	NA	False	NA	NA	NA	93294599	93297235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_+_93294600_93297200
100894	chr4	+	3192	2	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	1637	765	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	4	73	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTCTACAAGTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	145174946	145178223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145176244_145176328
100895	chr2	+	240	4	ISM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	418	13	377	-10	3prime_fragment	FALSE	canonical	3	3954	junction_3	1499.92407215239	1854	11	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGACAGTTAAGTCTGCTT	NA	False	NA	NA	False	NA	NA	NA	179899587	179900225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179899645_179899778_179899851_179900022_179900079_179900170
100896	chr4	-	3011	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-71	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	111.162887242101	2	82	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTTCAACAAGTTTGC	9452	False	NA	NA	False	NA	NA	NA	147894316	147838444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845857_147891546_147891641_147893953
100897	chr4	+	2420	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	24.5407823836161	4	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147394998	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147415724_147416574_147416620_147416849_147417100
100899	chrM	-	1613	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	1	-1545	1	1545	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9251	False	NA	NA	False	NA	NA	NA	6937	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6900
100900	chr15	-	1457	11	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	-86850	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	11858.8357442879	620	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	80062919	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965983_79966590_79966784_79967524_79967544_80062737
100901	chr17	-	1654	11	NNC	ENSMUSG00000062480.13	novel	2144	10	NA	NA	3158	6016	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	30	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAGATGAACAGTGAAAAC	NA	False	NA	NA	False	NA	NA	NA	13143411	13136683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139344_13139625_13139752_13140987_13141164_13141493_13141621_13142107_13142297_13142415_13142580_13143145
100902	chr13	+	4346	10	FSM	ENSMUSG00000007617.19	ENSMUST00000080127.12	3052	10	-14	-1280	-14	-168	multi-exon	FALSE	canonical	0	0	junction_6	16.8244384273313	35	49	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTTCTCTGGAGAATG	NA	False	NA	NA	False	NA	NA	NA	93441292	93541469	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_93441811_93478263_93478421_93483076_93483209_93485712_93485806_93492447_93492588_93522852_93522889_93524031_93524189_93528198_93528310_93529535_93529617_93538548
100903	chr4	+	1995	2	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	29605	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	147667400	147669653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147668660_147668917
100905	chr4	+	3676	5	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	12	0	intron_retention	FALSE	canonical	3	15	junction_2	40.4436336151934	121	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311747	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145311905_145314001_145314095_145343640_145343746_145347127_145347255_145348721
100906	chr4	-	3475	7	Antisense	novelGene_ENSMUSG00000028580.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGGACTGGGCTGACGC	NA	False	NA	NA	False	NA	NA	NA	130468867	130390679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_130390779_130396235_130396607_130428349_130428420_130445462_130445572_130446481_130446663_130455308_130457857_130468770
100907	chr4	+	2904	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	0	-1903	multi-exon	TRUE	non_canonical	0	0	junction_3	130.212902586495	1	29	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTTCACATTATAGGATAA	NA	False	NA	NA	False	NA	NA	NA	146206900	146552846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146209452_146209546_146291416_146291510_146370031_146370163_146371784_146371878_146384369_146384431_146388486_146388614_146390758_146390897_146391478_146392628_146392797_146393401_146552581
100908	chr5	+	2825	14	NNC	ENSMUSG00000037313.17	novel	2187	15	NA	NA	-7	0	intron_retention	FALSE	non_canonical	0	0	junction_13	264.926985587176	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	33815483	33829542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828859_33829016
100909	chr16	+	4340	7	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	0	intron_retention	FALSE	canonical	3	675	junction_6	512.628981059618	2	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22928904_22928983_22930014_22930252_22930343_22930566_22930647_22931100
100910	chrM	+	2241	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-659	0	659	mono-exon	FALSE	NA	NA	NA	NA	NA	1166	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCCCTTCGACCTGACAG	-3	True	NA	22	True	NA	NA	NA	1093	3334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3300
100911	chr19	-	1210	3	Antisense	novelGene_ENSMUSG00000025066.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	63	1	18	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGGCGGAGCCTCACCGG	NA	False	NA	NA	False	NA	NA	NA	47722344	47720183	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_47720264_47721070_47721126_47721269
100912	chr9	+	2238	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	186	8	-19	-8	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	3034	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCTGTGTTGTGTTTTGT	1850	False	NA	NA	False	NA	NA	NA	59563836	59586650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
100913	chr11	+	2298	10	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	105	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACGCGGGCTCTCCGCA	NA	False	NA	NA	False	NA	NA	NA	33102509	33113077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33105220_33106001_33106104_33106662_33106734_33106974_33107049_33109933_33109995_33110333_33110436_33111150_33111228_33111548_33111630_33112924
100914	chr9	-	1736	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	54	4	54	-4	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	28	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	7154	False	NA	NA	False	NA	NA	NA	78388952	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
100916	chr1	+	4157	16	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	0	-5011	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	719.920779592372	2	105	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCTAATGCAAACTCAGG	NA	False	NA	NA	False	NA	NA	NA	118555675	118607887	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581536_118584111_118584251_118586737_118586853_118589715_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117_118606789_118606856
100917	chrM	+	2262	2	Genic_Genomic	ENSMUSG00000064367.1_ENSMUSG00000064370.1	novel	1824	1	NA	NA	0	580	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	85	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGACAAACATACGAAAAACA	-4	True	NA	4	True	NA	NA	NA	11741	14145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13954_14095
100918	chr6	+	713	1	ISM	ENSMUSG00000030291.13	ENSMUST00000075077.3	1713	3	13	2717	13	-1648	mono-exon	FALSE	NA	NA	NA	NA	NA	5	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTAGATTGATACCAAATT	NA	False	NA	NA	False	NA	NA	NA	146548670	146549383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_146548700_146549400
100919	chr4	+	2314	11	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCGGCCTGGCCGAGCAC	257	False	NA	NA	False	NA	NA	NA	137469056	137523657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470016_137470496_137470614_137470943_137471137_137473702_137473841_137475071_137475140_137476859_137477000_137479858_137480044_137481181_137481354_137482395_137482514_137482941_137483067_137523558
100921	chr1	+	3014	2	Intergenic	novelGene_328	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTCTCTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	6064407	6070529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_6066942_6070049
100922	chr4	+	3235	6	Intergenic	novelGene_2113	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	186.8	1	70	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146800392	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146800518_146802050_146802721_146802810_146803281_146803449_146803764_146803931_146804099_146804518
100923	chr15	-	1755	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	70	28	6	-28	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	8	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTCTGGTAACTGCT	NA	False	NA	NA	False	NA	NA	NA	31601880	31590973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
100924	chr5	-	2033	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-9	-83	-9	83	mono-exon	FALSE	NA	NA	NA	NA	NA	1	72	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833564	5831531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
100925	chr13	+	2597	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	2	209	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	114.499606986225	1	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGGCAGTTATCTCCTA	NA	False	NA	NA	False	NA	NA	NA	62277748	62321442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62319461_62319540_62320925_62321008
100927	chrX	-	664	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	408	-73	-408	mono-exon	FALSE	NA	NA	NA	NA	NA	19	8	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGGGCTGCCCAGAACAT	NA	False	NA	NA	False	NA	NA	NA	79238531	79237867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237900_79238500
100928	chr9	-	1099	7	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	48	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGGAAGGAATAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	64085939	64082104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64082576_64082863_64083007_64083375_64083436_64085015_64085073_64085168_64085300_64085504
100930	chr7	-	1834	8	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-14	-33	intron_retention	FALSE	canonical	3	19253	junction_4	601.394569788777	9	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCCACTGCCAATAAACA	NA	False	NA	NA	False	NA	NA	NA	126398356	126394440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396721_126396815_126396949_126398216
100931	chr16	+	2485	18	Antisense	novelGene_ENSMUSG00000022710.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.235294117647059	1	66	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACTCCCCTGGGAAGGAC	1265	False	NA	NA	False	NA	NA	NA	8514749	8533774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_8514784_8515453_8515559_8515760_8515858_8516314_8516451_8516583_8516711_8517002_8517152_8517909_8518069_8519827_8519942_8521333_8521411_8522791_8522885_8522968_8523474_8523949_8524003_8524460_8524593_8525500_8525609_8526720_8526814_8527902_8528040_8529855_8530065_8533617
100932	chr9	+	2169	11	NNC	ENSMUSG00000032294.18	novel	2432	11	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7031.20312606598	4	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTTGTGTTTTGTTTT	1883	False	NA	NA	False	NA	NA	NA	59563869	59586653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_59563933_59572482_59572641_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579316_59582839_59583018_59585326_59585509_59586010
100933	chr1	-	3169	11	Antisense	novelGene_ENSMUSG00000026380.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGTCCAAGATACCAAC	NA	False	NA	NA	False	NA	NA	NA	118607329	118581479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_118581550_118584094_118584249_118586735_118586847_118589707_118589800_118592486_118592538_118592627_118592717_118593840_118593938_118596362_118596464_118597117_118597260_118603302_118603350_118605114
100934	chr3	-	3292	1	Intergenic	novelGene_3077	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	81	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAATAGCCACACAAACA	NA	False	NA	NA	False	NA	NA	NA	9527424	9524132	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_9524100_9527400
100935	chr4	+	2531	9	NIC	ENSMUSG00000029056.14	novel	2508	19	NA	NA	4	-2500	intron_retention	FALSE	canonical	3	88	junction_5	25.551112989457	9	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCCCTACTCCAAGGTGA	NA	False	NA	NA	False	NA	NA	NA	155048593	155061111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_155048727_155053586_155054245_155054450_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039
100936	chr4	+	2071	4	Intergenic	novelGene_2062	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	21	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146318024	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146318032_146390823_146391620_146391956_146392337_146392673
100937	chr13	+	3459	5	NNC	ENSMUSG00000113836.2	novel	2707	4	NA	NA	-50	1164	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	126.709066368591	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTTCTGTTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	62163747	62199964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729_62197707_62197789
100938	chr17	-	2349	6	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	50	93	intron_retention	FALSE	non_canonical	0	0	junction_1	85.9264802025546	1	53	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACCCAACCCAGGACTCTG	NA	False	NA	NA	False	NA	NA	NA	37299887	37279993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_37280210_37280336_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546
100940	chr19	-	4102	26	NNC	ENSMUSG00000034371.10	novel	2516	18	NA	NA	-24170	-6554	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGACACGTTGCAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	10607188	10582949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588163_10588998_10589104_10590234_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599082_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601000_10602084_10602280_10602529_10602695_10603258_10603354_10603954_10604125_10604487_10604597_10605122_10605229_10605788_10605910_10606439
100941	chr5	-	802	4	NNC	ENSMUSG00000029580.15	novel	861	3	NA	NA	0	46	intron_retention	FALSE	non_canonical	0	0	junction_1	1924.77392611877	1	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGGCAGCCAGGGCTGG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889298_142890987_142891232_142891318_142891448_142892406
100943	chr11	+	1085	9	NNC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	-2	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	932.235812107108	2	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCTATTTTTTCATAA	NA	False	NA	NA	False	NA	NA	NA	9068624	9086146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081758_9083230_9083349_9084721_9084932_9085163_9085311_9085960
100944	chr1	+	3039	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	3	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	110.424453813456	79	50	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTCACTGATAGCTGT	8322	False	NA	NA	False	NA	NA	NA	191307876	191353674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318689_191323920_191324022_191326540_191326586_191328284_191328485_191328998_191329122_191334417_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347940_191349923_191350023_191351707_191351894_191353276
100945	chr9	+	2086	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	308	0	3	0	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	70	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2475	False	NA	NA	False	NA	NA	NA	40712587	40716496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
100946	chr15	+	2500	1	Intergenic	novelGene_3349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGGTGTCAAACGCCAAG	NA	False	NA	NA	False	NA	NA	NA	92905926	92908426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_92905900_92908400
100947	chr3	+	2677	1	FSM	ENSMUSG00000095661.2	ENSMUST00000066794.9	2798	1	96	25	-88	-25	mono-exon	FALSE	NA	NA	NA	NA	NA	1	71	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTCAACAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12920991	12923668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_12921000_12923700
100948	chr15	-	2676	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	2	55	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	683	False	NA	NA	False	NA	NA	NA	36793838	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771248_36771384_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
100949	chr14	-	990	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	6	566	6	-566	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	8763	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGTTTGTTTTGCTCTG	1694	False	NA	NA	False	NA	NA	NA	19873886	19861984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
100950	chr4	+	4417	29	NNC	ENSMUSG00000037139.16	novel	5575	37	NA	NA	15871	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	3.26702760743693	22	60	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATCAAGAGGCAGCACCC	6899	False	NA	NA	False	NA	NA	NA	135502896	135542865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_135503018_135503645_135503788_135505347_135505548_135506663_135506718_135507110_135507239_135510325_135510510_135513124_135513300_135514709_135514832_135515205_135515394_135515598_135515726_135516844_135517024_135522392_135522508_135523591_135523749_135524274_135524385_135524764_135524810_135525605_135525640_135525705_135525743_135528312_135528458_135528652_135528713_135529026_135529095_135530518_135530630_135533348_135533437_135534194_135534234_135534479_135534589_135536106_135536271_135538059_135538097_135538245_135538269_135539754_135539811_135541466
100951	chr7	+	1626	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	23	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2898.69849753158	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAACCTTGAACAGTGATG	NA	False	NA	NA	False	NA	NA	NA	46495316	46505033	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499759_46500181_46500483_46501300_46501419_46503406_46503531_46504400
100952	chr7	+	1140	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	103	-11	103	11	mono-exon	FALSE	NA	NA	NA	NA	NA	7	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396497	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
100953	chrX	+	2344	11	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	760	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1141.23496266106	4	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGTGCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100474100	100492195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486906_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
100954	chr3	-	2478	2	Antisense	novelGene_ENSMUSG00000027714.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGGCCAGATATTGCCCC	NA	False	NA	NA	False	NA	NA	NA	36614506	36611978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_36612970_36613019
100955	chr13	-	6785	5	Intergenic	novelGene_1424	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_4	31.4364438192363	1	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGCTCCGTCATTAAACT	NA	False	NA	NA	False	NA	NA	NA	65960894	65889770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_65896095_65896542_65896686_65954300_65954362_65954561_65954689_65960764
100956	chr16	+	2708	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
100957	chr14	-	2892	14	NNC	ENSMUSG00000021810.4	novel	3132	14	NA	NA	-73	-311	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	140.043104099835	2	104	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGTCTGACTGAGGCA	NA	False	NA	NA	False	NA	NA	NA	20398262	20370230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396888_20397861
100958	chrX	+	9818	5	Intergenic	novelGene_4046	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	97	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	122307236	122755359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_122310368_122311492_122312779_122636355_122636360_122748424_122752038_122753575
100960	chr1	-	1841	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	-31	-807	-31	807	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	2	112	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATCAAGCTTAGTCTCT	2279	False	NA	NA	False	NA	NA	NA	93729687	93719490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
100961	chr4	+	4397	7	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-55178	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	178.682213253959	2	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGGCTGTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	146038215	146135326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146093460_146093548_146094927_146095022_146102109_146102186_146126781_146126867_146129876_146130004_146131535
100962	chr17	+	4298	2	Intergenic	novelGene_322	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	112	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	94990129	94995294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_94991874_94992740
100963	chr8	-	2245	4	NNC	ENSMUSG00000051176.7	novel	1837	5	NA	NA	3274	-2	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_3	1963.39915000038	6	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATGAGTTCAATTTCT	NA	False	NA	NA	False	NA	NA	NA	43756699	43748105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_43749173_43749261_43749574_43753664_43753743_43755911
100964	chr5	-	2900	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	9	219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	156.839000960291	2	52	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGTTTTTGAGAGCACTT	NA	False	NA	NA	False	NA	NA	NA	31337244	31314568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330425_31331318_31331434_31331575_31331840_31337227
100965	chr12	+	2157	10	NIC	ENSMUSG00000097451.12	novel	1627	11	NA	NA	-15	-116	combination_of_known_splicesites	FALSE	canonical	2	4	junction_8	204.464612531797	1	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTTTGGGTGGGTGGG	2882	False	NA	NA	False	NA	NA	NA	109612580	109628027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623266_109626156_109626242_109627179
100966	chr17	+	1084	2	Intergenic	novelGene_79	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	56	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095194	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
100967	chr7	-	3980	5	NIC	ENSMUSG00000030541.17	novel	1790	11	NA	NA	-6	1642	intron_retention	FALSE	canonical	3	1616	junction_3	245.994283470165	4	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAACAAGTCAGGGATGG	NA	False	NA	NA	False	NA	NA	NA	79748893	79742951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_79745462_79745546_79745645_79745770_79745884_79747551_79748663_79748745
100968	chr17	+	2533	8	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	20553	116754	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	99.0623386498396	2	71	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGATATCCCCAAGTATG	NA	False	NA	NA	False	NA	NA	NA	17304927	17426644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17305910_17306151_17306213_17307505_17307821_17307976_17308329_17308375_17308762_17309265_17309626_17309967_17309992_17426591
100969	chr1	+	960	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	4	-13	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9512.68242342237	1	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGTCTCAAAGCCTGGT	NA	False	NA	NA	False	NA	NA	NA	86454532	86458421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457239_86457734
100970	chr4	+	4069	20	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	0	2616	intron_retention	FALSE	non_canonical	0	0	junction_15	460.332488534103	2	60	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCGCTTGCACGTGGCCC	9981	False	NA	NA	False	NA	NA	NA	155954023	155976176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971304_155971445_155971572_155971657_155971888_155971979_155972061_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076_155973624_155973888_155974051_155974120_155975114_155975213_155975362_155975509_155975699_155975817
100971	chr11	-	5134	4	Intergenic	novelGene_2293	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	73	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	57450921	57433746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57434170_57446060_57448888_57448944_57450415_57450507
100973	chr9	-	1691	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5990.46978158488	1	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTGTGTTGGTCAATGC	7153	False	NA	NA	False	NA	NA	NA	78388953	78385737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386122_78386239_78386475_78386559_78386817_78386929_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
100974	chr10	+	1703	1	Intergenic	novelGene_3490	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTTGCCTTGGTCATGGT	7465	False	NA	NA	False	NA	NA	NA	80235802	80237505	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_80235800_80237500
100975	chr17	+	2470	7	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	-20	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	103.5305912923	1	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCACCTTCTAAGGGATG	NA	False	NA	NA	False	NA	NA	NA	17284354	17309879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284469_17286411_17286628_17305782_17305910_17306151_17306213_17307505_17308923_17309259_17309552_17309636
100976	chr18	-	665	1	ISM	ENSMUSG00000024505.17	ENSMUST00000163590.9	3145	6	58791	1	37296	-1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	19	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGATTCTGGTTTGTTGTG	NA	False	NA	0	True	NA	NA	NA	49829877	49829212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_-_49829200_49829900
100977	chr11	-	5261	1	Intergenic	novelGene_2345	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	79	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAAATCCTCTTGCAA	NA	False	NA	NA	False	NA	NA	NA	57450923	57445662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445700_57450900
100978	chr5	+	2885	17	NIC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	-8	80	intron_retention	FALSE	canonical	0	0	junction_5	706.863580257004	18	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGTTAGATACTTT	NA	False	NA	NA	False	NA	NA	NA	108213531	108255109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108213832_108217027_108217390_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
100979	chr12	-	693	7	NNC	ENSMUSG00000061477.5	novel	954	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	5471.28825222076	7	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTTGTAGTAACTTGTC	NA	False	NA	NA	False	NA	NA	NA	28685878	28681081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28681193_28681622_28681774_28683766_28683874_28684207_28684352_28685414_28685487_28685578_28685663_28685854
100980	chr17	+	2320	4	NNC	ENSMUSG00000060149.8	novel	1598	4	NA	NA	80	67189	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	64.5824193483713	1	60	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAATGTAATCAATCTAA	NA	False	NA	NA	False	NA	NA	NA	17171893	17261608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17171971_17257906_17257968_17259258_17260014_17260181
100981	chr16	+	564	1	Intergenic	novelGene_3702	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
100982	chr9	+	5126	22	NNC	ENSMUSG00000035024.17	novel	4675	30	NA	NA	6335	-12971	intron_retention	FALSE	canonical	0	0	junction_4	55.8121647351749	1	207	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCTCGGACCATCAGGT	NA	False	NA	NA	False	NA	NA	NA	26948279	26985742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_26948436_26952688_26952852_26955791_26955977_26956346_26956522_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018
100983	chr3	+	488	1	Intergenic	novelGene_3068	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	104	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGATGCAGAAAAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	5925398	5925886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925900
100984	chrM	+	837	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	361	347	361	-347	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGGCTTCACCCTAGAT	282	False	NA	-1	True	NA	NA	NA	5688	6525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5700_6500
100985	chr4	+	2767	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	2272	-243	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	222.443251190051	1	65	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGAAAAAATATCCTTAAAA	1765	False	NA	NA	False	NA	NA	NA	145243725	145265515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145243821_145245504_145245591_145257381_145257486_145261385_145261513_145263160
100986	chr3	+	822	4	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7020.01229818486	8	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570278	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571427_137572264
100987	chr17	+	510	1	Intergenic	novelGene_235	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGGAGCTGTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	40155429	40155939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40155400_40155900
100988	chr11	-	2438	9	NIC	ENSMUSG00000063652.11	novel	3461	10	NA	NA	80	-241	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	1.87082869338697	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATCTTTTCAGAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	53871078	53841629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_53842182_53842532_53842669_53843826_53844010_53845513_53845729_53846810_53846921_53848799_53848927_53850029_53850202_53851108_53851264_53870290
100989	chr2	+	4358	28	Antisense	novelGene_ENSMUSG00000027185.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTAAGTGGCAGACAGCAC	NA	False	NA	NA	False	NA	NA	NA	103551603	103591534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103552274_103554536_103554623_103555434_103555510_103556011_103556108_103556464_103556584_103557059_103557236_103558149_103558259_103558344_103558436_103560582_103560640_103560852_103560989_103561650_103562395_103562500_103562599_103563261_103563383_103564090_103564182_103564714_103564873_103565212_103565332_103570088_103570237_103573390_103573491_103573611_103573700_103574627_103574767_103578325_103578431_103578529_103578643_103580560_103580628_103582923_103583047_103584402_103584578_103587515_103587604_103588013_103588139_103591393
100990	chr11	+	1788	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	230	4	-45	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	4	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5361	False	NA	NA	False	NA	NA	NA	52251916	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
100991	chr11	-	5068	22	Fusion	ENSMUSG00000018287.13_ENSMUSG00000040712.17	novel	4398	22	NA	NA	791	-19	multi-exon	FALSE	canonical	1	1	junction_9	344.650080523036	3984	96	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTCTGACTTGTACCTG	NA	False	NA	NA	False	NA	NA	NA	70573811	70554615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022_70561089_70561171_70561247_70561374_70561591_70561833_70561906_70562275_70562460_70562709_70562907_70564779_70565082_70565437_70565661_70565981_70566061_70566378_70566564_70567225_70567342_70569109_70569245_70570352_70570480_70571650_70572595_70573286_70573422_70573719
100992	chr12	-	1189	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	537	2	-257	-2	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	69	16	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638235	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
100993	chr10	-	1211	4	Antisense	novelGene_ENSMUSG00000034994.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	29	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACACAGCACGTTGGATTC	7864	False	NA	NA	False	NA	NA	NA	81018330	81016699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81016990_81017059_81017245_81017331_81017459_81017721
100994	chrM	-	885	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	215	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGTTTGCGTGTATATAT	900	False	NA	60	True	NA	NA	NA	15288	14403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14400_15300
100995	chr4	+	4086	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	187.784344395373	27	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGGCTGTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	145397255	145431012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145427474
100996	chr4	+	8132	5	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	9418	59167	multi-exon	TRUE	canonical	0	0	junction_1	76.333151382607	14	131	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAATTGACACAGATTG	NA	False	NA	NA	False	NA	NA	NA	147244368	147477358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147249844_147409230_147409335_147413438_147413566_147415724_147418128_147477335
100997	chr8	+	2593	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-25	-2195	multi-exon	FALSE	non_canonical	0	0	junction_5	531.296677949336	1	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATAGCGTACACTCAAAG	NA	False	NA	NA	False	NA	NA	NA	19834736	20043693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20041935_20041978
100998	chr16	+	4186	7	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	441	junction_1	713.709032683021	3	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22929094_22929329_22930014_22930252_22930343_22930566_22930647_22931100
100999	chr5	+	3517	10	NNC	ENSMUSG00000040407.19	novel	13123	48	NA	NA	13831	23178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	202	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGGGGCGGGGCTTCTGG	NA	False	NA	NA	False	NA	NA	NA	4131303	4154488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_4133313_4136462_4136636_4137782_4137874_4141844_4142037_4142380_4142507_4149122_4149299_4150144_4150270_4151180_4151355_4152927_4153032_4154141
101000	chr13	-	4052	5	NNC	ENSMUSG00000112964.2	novel	1332	4	NA	NA	-5	3057	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	12.5199840255489	30	102	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAAATTAATTTCAAGT	6488	False	NA	NA	False	NA	NA	NA	74610819	74579842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74583189_74583440_74583829_74585688_74585761_74585978_74586106_74610700
101001	chr2	-	3595	5	Intergenic	novelGene_2843	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	174	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTACAGAGAGAAACTTG	NA	False	NA	NA	False	NA	NA	NA	176781366	176766061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_176766151_176775444_176775501_176776033_176776160_176776365_176776428_176778104
101002	chr1	-	2848	16	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	35	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	665.397204683037	32	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACATGTGGACTTCATGCT	NA	False	NA	NA	False	NA	NA	NA	20890449	20873240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876908_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
101003	chr4	+	2085	11	ISM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	300	8	9	-2	intron_retention	FALSE	canonical	3	2891	junction_9	3977.34052351568	177	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGTGTGCTGGGCATCT	NA	False	NA	NA	False	NA	NA	NA	150321708	150333328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517
101004	chr17	+	4272	13	NNC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	-6	-5	intron_retention	FALSE	non_canonical	0	0	junction_5	722.605394081414	9	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	1441	False	NA	NA	False	NA	NA	NA	56611341	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619421_56619803_56620252_56622191_56622316_56622398_56622882_56624003_56624111_56624990_56625385_56627161_56627283_56627396_56627543_56629020
101007	chr9	+	1318	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1463	147	1445	-147	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	3	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082119	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
101009	chr5	-	2126	1	ISM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	1753	171	925	-159	mono-exon	FALSE	NA	NA	NA	NA	NA	26	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTCAAACAGGAAGACAGAC	NA	False	NA	NA	False	NA	NA	NA	125465325	125463199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125463200_125465300
101011	chr10	+	3032	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2609.45160304595	2	93	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012541_81013519_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015290_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
101012	chr11	-	2483	12	NNC	ENSMUSG00000001588.13	novel	2482	22	NA	NA	59	-1158	intron_retention	FALSE	canonical	0	0	junction_3	16.1101579782026	1	102	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGAGGCCCGGGTGGAGGCC	9632	False	NA	NA	False	NA	NA	NA	69786306	69775466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69776431_69776518_69776643_69777793_69777942_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
101013	chr8	+	1778	2	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	12757	-376	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	58	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGCAGGGGGTAAATTTAC	NA	False	NA	NA	False	NA	NA	NA	20170770	20172618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20170964_20171033
101014	chr10	-	2326	11	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	25	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	619.451378237227	2	67	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTGTTCTCTTTGT	11	True	NA	NA	False	NA	NA	NA	128401831	128393633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399474_128399575_128401608
101015	chr11	-	1684	12	ISM	ENSMUSG00000040667.12	ENSMUST00000035283.11	2450	17	-5	1882	-5	-281	5prime_fragment	FALSE	canonical	3	352	junction_1	146.223252834224	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGGATTTGGCTCCCCC	NA	False	NA	NA	False	NA	NA	NA	70860793	70835789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
101017	chr5	+	1730	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	5	532	5	-532	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	3	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTGTTCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	45650720	45669501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
101018	chr14	+	1984	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	65	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	566.213792812925	2	50	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTCAGACTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271232	30295579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293008_30293108_30293203_30294164_30294288_30295293
101019	chr11	-	5242	11	NNC	ENSMUSG00000018428.16	novel	3758	11	NA	NA	41	0	intron_retention	FALSE	non_canonical	0	0	junction_8	360.850107385324	1	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	88755371	88721617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88733155_88734094_88734664_88736571_88736692_88755222
101020	chr4	+	3465	2	Intergenic	novelGene_1890	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4320	45	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66821213	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66821344_66822500
101021	chr4	-	2923	3	ISM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	22862	544	22850	-544	3prime_fragment	FALSE	canonical	3	457	junction_1	20.5	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGATCATGAAAATCTTAT	NA	False	NA	NA	False	NA	NA	NA	147704103	147696939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_147698506_147699736_147699864_147702873
101022	chr8	+	4304	17	NNC	ENSMUSG00000000303.13	novel	3203	17	NA	NA	-13	-9	intron_retention	FALSE	non_canonical	0	0	junction_9	254.482563253359	2	100	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5064	False	NA	NA	False	NA	NA	NA	107329997	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386282_107386383_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
101023	chr7	+	5587	19	NNC	ENSMUSG00000070425.14	novel	4847	22	NA	NA	-46565	-12566	intron_retention	TRUE	non_canonical	0	0	junction_1	46.6231609374833	41	125	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATGTGTTGCCGATCTG	4589	False	NA	NA	False	NA	NA	NA	101668354	101732967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_101669700_101672518_101672621_101673219_101673354_101678218_101678339_101680699_101680807_101684511_101684669_101688756_101688898_101691832_101691874_101714475_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725029_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
101024	chr5	-	1795	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-18	-10	intron_retention	FALSE	non_canonical	0	0	junction_1	1654.6796668842	4	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAAACAGCTTGTGGCT	9804	False	NA	NA	False	NA	NA	NA	142891594	142888879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889256_142889414_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
101026	chr5	-	3899	7	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	80	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	33829546	33822232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33822309_33822512_33824509_33825303_33825396_33825475_33825579_33826004_33826990_33828745_33828855_33829008
101027	chr16	-	564	1	Intergenic	novelGene_3703	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101028	chr4	+	2598	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	13	0	multi-exon	FALSE	canonical	0	0	junction_1	67.9411510058521	1	48	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147216507	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147316807_147316926_147337753_147337859_147413438_147413566_147415724_147415863_147416528
101029	chrX	+	1863	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	-45	-750	-45	750	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAATAAGTAATAA	NA	False	NA	NA	False	NA	NA	NA	79500302	79502165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_79500300_79502200
101030	chr4	+	3819	8	Intergenic	novelGene_2070	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	163.500733319207	2	71	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146365110	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146370075_146370163_146428065_146428160_146797298_146797381_146800390_146800518_146802050_146802756_146803343_146803953_146804037
101031	chr10	-	4083	4	Antisense	novelGene_ENSMUSG00000112335.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	97	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCAGTTTCCAGATATTTA	NA	False	NA	NA	False	NA	NA	NA	15621135	15485849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_15486698_15512879_15515929_15620456_15620459_15620951
101032	chr4	+	2887	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-17	0	multi-exon	TRUE	non_canonical	0	0	junction_1	46.3827486787922	1	60	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216477	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147447267_147447362_147536170_147536289_147661469_147661587_147665698_147665826_147667290_147667445_147667771_147668577_147668660
101033	chr9	-	6385	22	NIC	ENSMUSG00000032580.13	novel	6321	23	NA	NA	0	-15	intron_retention	FALSE	canonical	3	324	junction_21	96.5640553210425	5	104	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATACCTTCAAAACTGGG	9715	False	NA	NA	False	NA	NA	NA	107648185	107617713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_107618292_107619590_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
101034	chr8	+	3671	3	NIC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-23	-772	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	303.5	2	68	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATATGTACGTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	21107589	21122015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_21107822_21116684_21116805_21118696
101036	chr6	+	3864	7	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1081	71	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGGCCAACTGGCAGGAG	NA	False	NA	NA	False	NA	NA	NA	144958677	145022169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144961318_144964917_144965084_144978510_144978629_144980266_144980378_144985160_144985364_144993018_144993089_145021613
101037	chr2	-	3949	5	NIC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	4	2706	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	120.131958695428	7	71	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGTAAAGTCTGTGGG	NA	False	NA	NA	False	NA	NA	NA	176898210	176882443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176898132
101038	chr11	+	1639	7	ISM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	671	-870	671	-4	3prime_fragment	FALSE	canonical	3	3141	junction_4	161.375080686786	1	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	11	False	NA	NA	False	NA	NA	NA	52265760	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
101039	chr11	-	1269	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-66	-201	-66	201	mono-exon	FALSE	NA	NA	NA	NA	NA	38	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCCTTTAAAGCACTAGA	4395	False	NA	NA	False	NA	NA	NA	20286079	20284810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
101040	chr18	-	2938	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	142	18	-6	-10	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	1	107	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGATTTTAATTTTCTCA	NA	False	NA	NA	False	NA	NA	NA	14815829	14758697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
101041	chr5	+	1289	6	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	318	-2	162	2	3prime_fragment	FALSE	canonical	3	6763	junction_5	6890.1060833633	19	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAAGCCTGGCCTTTAT	NA	False	NA	NA	False	NA	NA	NA	115697843	115701788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
101043	chr15	+	2104	6	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGGGAAGAAGAAAAACAT	78	False	NA	NA	False	NA	NA	NA	36771195	36791236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36772157_36772283_36772731_36775479_36775578_36775658_36775823_36776488_36776614_36790927
101044	chr17	+	1128	4	Antisense	novelGene_ENSMUSG00000024121.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCAGGCGCTGCGCTC	NA	False	NA	NA	False	NA	NA	NA	24375699	24388371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_24375707_24382838_24383582_24383671_24383859_24388180
101045	chr9	+	1683	12	NNC	ENSMUSG00000032279.12	novel	1812	12	NA	NA	-4	-77	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	839.976347561531	1	36	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGGTATATTTCTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	54493760	54511143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_54493828_54497141_54497205_54499482_54499547_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508505_54510587
101046	chr13	+	2898	5	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	78.1868754971063	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	NA	False	NA	NA	NA	97619258	97633515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630134_97630239_97630912
101047	chr4	+	2940	7	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-22	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	77.213268865454	1	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCAACAAATTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	146033845	146063184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146035050_146035222_146036319_146036397_146054375_146054480_146058453_146058581_146060726_146061347_146061514
101049	chr11	-	1098	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	134	401	0	-177	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	4	43	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCAAGAATGTGTTGTC	NA	False	NA	NA	False	NA	NA	NA	33113072	33102687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
101050	chr16	-	1057	1	Intergenic	novelGene_3635	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCCAAAAGAAGAGCAGCTA	NA	False	NA	NA	False	NA	NA	NA	31602571	31601514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_31601500_31602600
101051	chr4	-	2508	9	Antisense	novelGene_ENSMUSG00000070605.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	26	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATGAAACCGCGGAACT	NA	False	NA	NA	False	NA	NA	NA	146552873	146206906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146207219_146209448_146209546_146218086_146218152_146312911_146312970_146388484_146388613_146390757_146390903_146391568_146392358_146392778_146393427_146552607
101052	chr10	-	1912	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	12	9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	617.94472963922	9	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGATCTGTATATATCCT	NA	False	NA	NA	False	NA	NA	NA	116899707	116886896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116897998_116898721_116898788_116898880_116898956_116899610
101053	chr15	-	1811	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	3	7	3	-7	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	38	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACTGGCCCTGAAGTCCC	NA	False	NA	NA	False	NA	NA	NA	75952758	75942045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
101054	chrX	+	826	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	409	-25	-409	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGAGCTGGGCAGAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	13068784	13069610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069600
101055	chr13	+	4965	4	FSM	ENSMUSG00000113836.2	ENSMUST00000220871.2	2707	4	96	-2354	96	2354	multi-exon	FALSE	canonical	3	77	junction_1	103.747556865478	1	241	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGACCAATTTCGTTTAA	NA	False	NA	NA	False	NA	NA	NA	62163514	62201154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_62163867_62194994_62195122_62195306_62195368_62196729
101056	chr16	-	5689	18	NNC	ENSMUSG00000022789.16	novel	3951	18	NA	NA	-3	-5	intron_retention	FALSE	non_canonical	0	0	junction_1	401.408920064398	30	77	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGCAATTGCCAGTAAGT	NA	False	NA	NA	False	NA	NA	NA	16176826	16130114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_16130749_16130934_16131908_16132127_16132288_16134197_16134308_16134465_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
101057	chr2	-	3182	5	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-41	1727	combination_of_known_junctions	FALSE	canonical	3	253	junction_4	344.203700590217	72	22	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAAGGTATGTTTCTGTC	2296	False	NA	NA	False	NA	NA	NA	177270044	177259269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
101058	chr10	+	1824	9	ISM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	24	1940	24	-70	5prime_fragment	FALSE	canonical	3	6005	junction_6	389.933568059997	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGTGCATCATTGAGGA	2205	False	NA	NA	False	NA	NA	NA	81012488	81016392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986
101059	chr15	+	2042	3	Intergenic	novelGene_3253	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	617.5	3	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22702075	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22702148_22703031_22704559_22704652
101060	chr5	-	1662	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1295	9	362	-9	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	4	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAACAGCTTGTGGCTC	4023	False	NA	NA	False	NA	NA	NA	142891214	142888878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
101061	chr6	-	1814	12	Antisense	novelGene_ENSMUSG00000030007.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3700	8	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCACAATGCTCCGCGCCG	6600	False	NA	NA	False	NA	NA	NA	85445372	85429041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_85429109_85436095_85436249_85436921_85437029_85438024_85438152_85438488_85438543_85439007_85439177_85441758_85441925_85442879_85443070_85443604_85443710_85444012_85444145_85444561_85444765_85445031
101062	chr16	-	564	1	Intergenic	novelGene_3704	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101063	chr10	+	2626	13	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	20	3	intron_retention	FALSE	canonical	0	0	junction_12	476.714296862737	7	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCCTGTCATTGGGCG	29	False	NA	NA	False	NA	NA	NA	79694625	79700269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978_79699293_79699413
101064	chr7	-	1430	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	73	8	-11	-6	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	14	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398353	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
101065	chr12	-	565	5	NNC	ENSMUSG00000061477.5	novel	820	6	NA	NA	32	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5944.70400335458	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCATAGTATTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	28685663	28681092	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_28681193_28681622_28681802_28684222_28684352_28685414_28685487_28685578
101066	chr18	-	2270	10	NIC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	16	-15	intron_retention	FALSE	canonical	3	17	junction_3	13.9558386383179	1	44	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTTCTTACTTAAGGAGT	NA	False	NA	NA	False	NA	NA	NA	67378332	67358128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_67358956_67359853_67359995_67360667_67360950_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
101067	chr11	-	930	1	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAAAGATCAGCCTCTGCT	NA	False	NA	NA	False	NA	NA	NA	62444039	62443109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62443100_62444000
101068	chr11	-	2318	13	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-1	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1560.00673075471	3	24	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTGAAATTGTACTTTA	9264	False	NA	NA	False	NA	NA	NA	106679710	106672371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676266_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
101069	chr5	-	2286	1	ISM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	1758	6	930	6	mono-exon	FALSE	NA	NA	NA	NA	NA	6	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125465320	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125463000_125465300
101070	chr12	+	5297	2	Antisense	novelGene_ENSMUSG00000021056.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	139	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	76269363	76276097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_76272813_76274249
101071	chr7	+	3764	18	FSM	ENSMUSG00000030562.18	ENSMUST00000032781.14	3753	18	-13	2	-13	-2	multi-exon	FALSE	canonical	2	6	junction_2	3.12706679058871	19	27	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTGTCTGTGGAATTTC	NA	False	NA	NA	False	NA	NA	NA	86895843	87047916	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_86896111_86896695_86896792_86944991_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
101072	chr11	+	816	5	ISM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	62	6413	18	117	5prime_fragment	FALSE	canonical	3	9525	junction_4	753.209922597943	1	8	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCCCCAATGTCCTCTC	3053	False	NA	NA	False	NA	NA	NA	75623756	75650258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117
101073	chr13	-	2653	4	Intergenic	novelGene_1477	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	70	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTTATCTATCTTGTTGA	NA	False	NA	NA	False	NA	NA	NA	75098268	74856959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_74858877_74979321_74979448_75042764_75043056_75097949
101074	chr7	+	1112	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	133	-13	133	13	mono-exon	FALSE	NA	NA	NA	NA	NA	17	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGGCT	NA	False	NA	NA	False	NA	NA	NA	51396527	51397639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
101075	chr17	-	2147	10	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	2	475	2	-475	5prime_fragment	FALSE	canonical	3	9221	junction_3	841.209975108606	11	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGATTAAACTAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	45884195	45879175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
101076	chr9	-	1333	6	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	-2	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5769.98017327616	16	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGAAATCTGTGTTGGT	8134	False	NA	-46	True	NA	NA	NA	78387972	78385743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386715_78387244_78387431_78387522_78387703_78387792
101077	chr13	-	3394	6	Intergenic	novelGene_1423	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	36.6038249367467	5	78	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65960874	65836970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_65837151_65950362_65951868_65952456_65953868_65954300_65954362_65954561_65954689_65960764
101078	chr17	-	649	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4726	18	1191	-18	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	1	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45879471	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
101079	chr11	+	2509	2	Genic_Genomic	ENSMUSG00000083465.2	novel	1267	1	NA	NA	-3	1328	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	62	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CTAAAAAGATTTAAAAAAAA	8740	False	NA	NA	False	NA	NA	NA	105664340	105666938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_+_105665645_105665733
101080	chr5	+	3759	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4934	-216	intron_retention	FALSE	non_canonical	0	0	junction_3	784.376561253426	2	100	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208605	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251890_108251992_108252131_108252185_108252291_108252397_108254453_108254590_108254647
101081	chr7	-	2136	5	ISM	ENSMUSG00000030695.17	ENSMUST00000205890.2	762	6	-180	-148	-3	-84	intron_retention	FALSE	canonical	3	19253	junction_1	423.578210015577	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCGGCTGTCTACAAGG	NA	False	NA	NA	False	NA	NA	NA	126398345	126395294	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815
101082	chr14	+	2072	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	51	1100	1	-4	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	13	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271138	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
101084	chr13	+	801	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	63	-31	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCAAAAAAAACAAAAAAACA	8025	False	NA	NA	False	NA	NA	NA	74554590	74555434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554975_74555017
101085	chrX	-	3457	13	NNC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-3929	0	intron_retention	FALSE	non_canonical	0	0	junction_7	691.387775098429	1	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	NA	False	NA	NA	NA	72834432	72822568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_72823133_72823219_72823730_72823818_72824637_72824757_72825396_72825611_72825710_72826280_72826323_72830380_72830538_72830805_72830911_72832438_72832555_72833400_72833478_72833633_72833725_72833962_72834029_72834257
101086	chrM	+	1449	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-71	0	-71	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	-2	True	NA	NA	False	NA	NA	NA	10095	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10100_11500
101087	chr11	+	2871	17	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	42	-6	intron_retention	FALSE	canonical	3	862	junction_14	84.3900912429889	3	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATAAGACCAATTGTTAAT	NA	False	NA	NA	False	NA	NA	NA	115455301	115474726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
101088	chr11	-	1102	12	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	1	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5898.47077954872	2	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCACTGTTTCTATTTGC	NA	False	NA	NA	False	NA	NA	NA	33113075	33102512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102584_33102757_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
101091	chr1	-	2978	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	53	0	1	0	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	1	94	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	20890483	20873191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
101092	chr16	-	546	1	Intergenic	novelGene_3676	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	27	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212021	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101093	chr3	+	484	1	Intergenic	novelGene_3067	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	25	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGTTAGATGCAGAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	5925398	5925882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925900
101094	chr7	-	1517	10	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-8	-37	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	9467.75819346251	1	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCAGCCCACTGCCAATA	NA	False	NA	NA	False	NA	NA	NA	126398321	126394444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396717_126396810_126396945_126397145_126397299_126398216
101095	chrX	-	2123	2	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	21766	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACAAGCATTAATTGTGC	NA	False	NA	NA	False	NA	NA	NA	93234491	93232322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93232935_93232980
101097	chr19	+	2291	2	Genic_Genomic	ENSMUSG00000044065.4	novel	906	1	NA	NA	-5358	1313	multi-exon	FALSE	canonical	2	2	junction_1	0	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTCAAGTCTGGGCTGATT	NA	False	NA	NA	False	NA	NA	NA	41442893	41450470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr19_+_41442955_41448240
101098	chr1	-	2206	13	ISM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	5529	46	5477	-8	3prime_fragment	FALSE	canonical	3	2257	junction_11	196.373563365563	1	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGACTTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20885007	20873237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912
101099	chr7	-	3758	6	Antisense	novelGene_ENSMUSG00000033685.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	70	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGAGAGGAAGGAAGCCAA	NA	False	NA	NA	False	NA	NA	NA	100148769	100143415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_100146153_100146298_100146513_100147282_100147478_100147552_100147654_100147939_100148123_100148441
101100	chr5	+	2898	19	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCGAAGATGGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	31314756	31337253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323358_31323702_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331121_31331429_31331575_31331839_31337226
101101	chr2	-	1182	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-109	-73	109	mono-exon	FALSE	NA	NA	NA	NA	NA	1	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	28824694	28823512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823500_28824700
101102	chr2	-	3204	24	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	49	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	243.422035433511	1	94	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTATGTTTAAAAAAAATA	NA	False	NA	NA	False	NA	NA	NA	127673675	127643080	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659357_127661132_127661285_127663594_127663777_127663861_127663908_127665878_127666005_127669217_127669418_127671357_127671497_127671597_127671658_127673639
101103	chr10	-	872	1	Antisense	novelGene_ENSMUSG00000091086.3_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGGGTGGAGTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	110962580	110961708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_110961700_110962600
101104	chr3	+	930	5	FSM	ENSMUSG00000037894.14	ENSMUST00000174561.8	810	5	-28	-92	-28	-12	multi-exon	FALSE	canonical	3	143	junction_3	6290.0667921732	6	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGTCATAACCCCGTGG	NA	False	NA	NA	False	NA	NA	NA	137570305	137572671	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571840_137571902_137572146
101105	chrM	+	690	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	74	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	24	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	72	False	NA	-49	True	NA	NA	NA	14218	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14315_14694
101106	chr19	-	2218	13	NIC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	26	-5	intron_retention	FALSE	canonical	3	2912	junction_8	215.973554836903	49	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTACGGTCTCCAGTG	3789	False	NA	NA	False	NA	NA	NA	7017309	6998074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_6998540_6999017_6999191_6999394_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
101107	chr3	+	863	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	104	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	16	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGCTTTAAACTTGCT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
101108	chr2	+	1405	7	ISM	ENSMUSG00000002718.15	ENSMUST00000163437.2	1992	17	12393	-459	-910	-122	3prime_fragment	FALSE	canonical	3	747	junction_4	89.7114200583676	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTTCAGGACAGGATTT	NA	False	NA	NA	False	NA	NA	NA	166781842	166788187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
101109	chr11	-	1000	1	Intergenic	novelGene_2255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGGTCACTGTGAGAGGC	NA	False	NA	NA	False	NA	NA	NA	40622214	40621214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_40621200_40622200
101110	chr16	+	4497	4	Intergenic	novelGene_3638	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	47	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACGCGTCTAATAACAAGGG	NA	False	NA	NA	False	NA	NA	NA	31967120	32019142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_31967556_32014945_32015336_32015383_32015841_32015927
101111	chr15	-	4953	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	127	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9381	False	NA	NA	False	NA	NA	NA	22704864	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
101112	chr13	-	4382	2	Antisense	novelGene_ENSMUSG00000113661.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	147	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATCTATGGTAATTGAAAG	NA	False	NA	NA	False	NA	NA	NA	65688884	65573727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_65575793_65686567
101113	chr3	-	4365	3	Antisense	novelGene_ENSMUSG00000025764.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	90	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACAACACAGGGAGACAG	NA	False	NA	NA	False	NA	NA	NA	41571279	41558901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_41559426_41564236_41564354_41567555
101114	chr5	-	1667	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1951.2737720098	6	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8921	False	NA	NA	False	NA	NA	NA	142892477	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889338_142889518_142889697_142889821_142890004_142890098_142890506_142890997_142891232_142891318_142891448_142892406
101117	chr17	+	3896	15	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	23	370	intron_retention	FALSE	canonical	3	1413	junction_6	333.288844820274	1	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTCCAAGAGAAGGAAAAAAA	443	False	NA	NA	False	NA	NA	NA	56610343	56629709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
101118	chr5	-	2726	15	NNC	ENSMUSG00000106864.4	novel	4718	18	NA	NA	98	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	218.002433987536	2	65	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAACTCCTTAAATCCCTC	NA	False	NA	NA	False	NA	NA	NA	31337095	31314765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315058_31317164_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331835_31336585
101119	chr5	+	371	1	Intergenic	novelGene_917	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	93	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCGCACCCTGTTCCAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
101120	chr12	+	1628	2	Genic_Genomic	ENSMUSG00000063129.2	novel	1658	1	NA	NA	-5593	-353	multi-exon	FALSE	canonical	0	0	junction_1	0	4	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCATCCCGCTGCCAGT	7004	False	NA	NA	False	NA	NA	NA	55606430	55613328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr12_+_55606488_55611757
101121	chrX	-	1248	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	-176	-73	176	mono-exon	FALSE	NA	NA	NA	NA	NA	26	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGCACCCACAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79238531	79237283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237300_79238500
101122	chr18	+	1755	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	-7	-1	7	mono-exon	FALSE	NA	NA	NA	NA	NA	41	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
101123	chr2	+	4093	2	Fusion	ENSMUSG00000094475.8_ENSMUSG00000082112.2	novel	1484	3	NA	NA	-139	1100	intron_retention	TRUE	non_canonical	0	0	junction_1	0	5	73	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCATCATTATGAATGGGA	NA	False	NA	NA	False	NA	NA	NA	174879774	175446753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_174880113_175442998
101124	chr4	+	2803	11	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	4	182333	multi-exon	FALSE	non_canonical	0	0	junction_1	151.865203387741	2	52	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216498	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147390101_147390233_147393100_147393224_147409219_147409335_147413438_147413566_147415724_147415863_147416444_147417258_147417427_147418091_147600209
101125	chr3	-	2832	4	Antisense	novelGene_ENSMUSG00000032902.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	12	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGATACTTCACTGGTCGT	NA	False	NA	NA	False	NA	NA	NA	104564568	104556795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_104556832_104558199_104558344_104560055_104560896_104562756
101126	chr6	-	1441	6	ISM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	23031	-2	-3124	0	intron_retention	FALSE	canonical	3	863	junction_4	88.0726972449465	1	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	NA	False	NA	NA	False	NA	NA	NA	71862703	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292
101129	chr5	-	2072	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-78	96	multi-exon	FALSE	non_canonical	0	0	junction_1	0	60	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833633	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5832818_5832860
101130	chrM	-	1027	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAATTAGTTCAGTTGCTG	-66	True	NA	NA	False	NA	NA	NA	11544	10517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10500_11500
101131	chr4	+	1098	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGCAGCCCTGGTGACCA	NA	False	NA	NA	False	NA	NA	NA	91739745	91740843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739700_91740800
101132	chr8	+	5133	20	NNC	ENSMUSG00000031753.17	novel	2442	19	NA	NA	-3809	-2	intron_retention	TRUE	non_canonical	0	0	junction_1	127.256605986931	24	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCATTGTGTTGGGTCC	5385	False	NA	NA	False	NA	NA	NA	111569422	111608857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111569646_111571093_111573445_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
101133	chr10	-	2701	15	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	371	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	121.260471881056	7	55	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175950	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105457_62116815_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
101134	chr16	+	2685	11	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	-2	-5	intron_retention	FALSE	canonical	2	44	junction_2	752.795324108751	42	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6060	False	NA	NA	False	NA	NA	NA	22926514	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22927384_22927468_22927602_22927943_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
101135	chr9	+	910	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	67	0	67	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	96	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	78099295	78116631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
101136	chr8	+	4308	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-92	-600	multi-exon	FALSE	canonical	0	0	junction_4	403.164048496391	1	95	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTTTTTAAGCAGGGGG	NA	False	NA	NA	False	NA	NA	NA	20697892	20726666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721225_20723164
101137	chr5	+	358	1	Intergenic	novelGene_955	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	210	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGCACCCTGTTCCAAAAA	NA	False	NA	NA	False	NA	NA	NA	146197802	146198160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
101138	chr16	+	7846	1	NIC	ENSMUSG00000002845.15	novel	2667	9	NA	NA	1430	38	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	25	77	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	7381	False	NA	NA	False	NA	NA	NA	38403900	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_38403900_38411700
101140	chr5	+	1817	5	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	345	6	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAGACACAAAAGAAGGC	NA	False	NA	NA	False	NA	NA	NA	142888871	142891449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320
101141	chr18	+	2197	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	413.220784407884	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAAACTTAACTATGTAGC	6432	False	NA	-90	True	NA	NA	NA	77126250	77234624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220875_77221636_77221764_77223475_77223648_77232698_77232839_77234398
101142	chr7	-	3401	3	NIC	ENSMUSG00000030744.14	novel	952	6	NA	NA	0	2	intron_retention	FALSE	canonical	3	13120	junction_2	784	9	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGACAAGGCCTGACTGG	8422	False	NA	NA	False	NA	NA	NA	99132858	99128097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_99130999_99131467_99131908_99132798
101143	chr18	-	4522	13	NIC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	0	intron_retention	FALSE	canonical	3	2259	junction_12	841.800154430967	8	92	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649570	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
101144	chrM	+	1251	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-289	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	0	True	NA	NA	False	NA	NA	NA	9877	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_10531_10946
101145	chr5	+	2160	14	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	45	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1584.15847781724	2	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAAGCTACTGGATCAT	NA	False	NA	NA	False	NA	NA	NA	129864106	129875191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864325_129865297_129865362_129866116_129866256_129866931_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
101147	chr6	-	3281	8	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	43	5	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_7	190.173926837986	2	145	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTGTAGTATGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	49191595	49062151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082633_49191230
101148	chr4	+	2650	7	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43237	2581	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	129.137416042843	13	42	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147533636	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147533956_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597042_147597711_147598998_147599994
101149	chr14	+	2803	23	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	0	-1314	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	343.735354308591	1	78	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACCAATCTACCGAAAAT	1840	False	NA	NA	False	NA	NA	NA	121148644	121183516	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163696_121166756_121166820_121170255_121170381_121170462_121170553_121170641_121170798_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488
101150	chr15	-	1169	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	20	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	681.347704096485	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTTGCCTTTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	51728899	51649963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661131_51662705_51662756_51705863_51706021_51728721
101151	chr5	-	2032	9	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-19	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	199.209688519409	1	88	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATTTTCCACTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	34093613	34055262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060760_34093391
101152	chrX	+	2239	8	NNC	ENSMUSG00000031432.4	novel	1965	7	NA	NA	12	326	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	755.657869889893	58	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGTAGAATTTAAGCATAAG	NA	False	NA	NA	False	NA	NA	NA	139357373	139377215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917_139376897_139376936
101153	chr16	+	1879	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	761.99948162712	3	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928991_22929094_22929333_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
101154	chr8	-	3053	4	Antisense	novelGene_ENSMUSG00000096401.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GCTAGAAAACAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	20724928	20717198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20717495_20721118_20721238_20722098_20722374_20722565
101155	chr3	+	2833	4	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	10812	1210	10812	-1210	3prime_fragment	FALSE	canonical	3	470	junction_1	22.4499443206436	19	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAGTTCTTCCGCAT	NA	False	NA	NA	False	NA	NA	NA	104556795	104564568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104556834_104558201_104558346_104560057_104560904_104562763
101156	chr7	-	3618	14	NIC	ENSMUSG00000054808.16	novel	2581	14	NA	NA	-2957	-21	combination_of_known_junctions	FALSE	canonical	3	457	junction_13	265.848023497699	2	97	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAATATTTTTAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	28610068	28592693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327
101157	chr17	+	1713	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	2	24	2	3	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	1	97	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460723	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
101158	chr6	-	2323	15	NNC	ENSMUSG00000029782.21	novel	3485	15	NA	NA	5	52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	342.131441801814	2	59	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTGGGTTTTAGTTAAAT	4	True	NA	NA	False	NA	NA	NA	30509743	30482361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489570_30491080_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508829_30509683
101159	chr4	-	2887	10	Antisense	novelGene_ENSMUSG00000080732.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	2.19988776369148	4	106	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGCCGAGATACATCGAGA	NA	False	NA	NA	False	NA	NA	NA	145352061	145237369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237496_145312570_145312703_145314004_145314093_145319499_145319570_145321948_145321993_145322190_145322345_145343685_145343755_145347138_145347249_145348719_145348866_145350113
101160	chr15	-	1843	9	Antisense	novelGene_ENSMUSG00000115902.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATGCAGGCCCCACC	NA	False	NA	NA	False	NA	NA	NA	79792114	79776630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_79776768_79779608_79779750_79781898_79782155_79782304_79782442_79783230_79783272_79789639_79789800_79790539_79790804_79791051_79791147_79791502
101161	chr7	-	4918	1	Intergenic	novelGene_2879	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	106	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGCCCCAGTACATGGGA	NA	False	NA	NA	False	NA	NA	NA	9955923	9951005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_9951000_9955900
101162	chr6	+	560	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-106	374	multi-exon	FALSE	non_canonical	0	0	junction_1	0	64	5	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAATAA	NA	False	NA	NA	False	NA	NA	NA	116150591	116151458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_116150826_116151132
101163	chr11	+	1146	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	351	2	-154	-2	multi-exon	FALSE	canonical	3	35417	junction_1	0	7	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442347	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
101164	chrM	-	1215	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1141	-5	1141	mono-exon	FALSE	NA	NA	NA	NA	NA	33	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGCTAGAGGTGGGTAGAC	9245	False	NA	NA	False	NA	NA	NA	6943	5728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5700_6900
101165	chr2	+	3709	8	Antisense	novelGene_ENSMUSG00000068479.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	212	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCACACAGCTGCGCAACTG	NA	False	NA	NA	False	NA	NA	NA	121322461	121337111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_121323361_121323731_121325307_121325399_121325503_121327810_121327968_121329767_121329932_121330024_121330142_121332828_121333348_121336936
101166	chr8	+	1149	1	Antisense	novelGene_ENSMUSG00000110469.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	50	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCCCAATGCGGCCAAATC	NA	False	NA	NA	False	NA	NA	NA	76131956	76133105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_76132000_76133100
101167	chr6	-	2774	12	NIC	ENSMUSG00000030177.15	novel	2610	12	NA	NA	18	2	combination_of_known_junctions	FALSE	canonical	3	17	junction_11	85.7515149373443	1	84	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGCTCTACAAAGTCTC	NA	False	NA	NA	False	NA	NA	NA	120341299	120301281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120341034
101168	chr15	-	2078	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-94	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	3	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	664	False	NA	NA	False	NA	NA	NA	36793857	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771324_36772077_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
101169	chr6	-	995	1	Antisense	novelGene_ENSMUSG00000042079.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTGGTGCTCTGCACTGTG	5183	False	NA	NA	False	NA	NA	NA	117902574	117901579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_117901600_117902600
101170	chr17	-	2244	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-18	intron_retention	FALSE	canonical	0	0	junction_9	3474.27917739337	9	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45884174	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882485_45884119
101171	chr10	+	2916	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	158	15	-158	multi-exon	FALSE	canonical	3	5618	junction_10	706.418033369635	1	69	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCATTCAGAGGTTTTTGG	2196	False	NA	NA	False	NA	NA	NA	81012479	81018174	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
101172	chr7	-	3606	23	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	1307.46120148494	28	24	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGATGTAGTTGTACATG	NA	False	NA	NA	False	NA	NA	NA	110682213	110671144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671370_110671546_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
101173	chr14	+	4769	21	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	484.459967386367	1	119	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	NA	False	NA	NA	NA	19801401	19861855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819001_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860176_19861058_19861135_19861253
101174	chr9	+	5430	9	Intergenic	novelGene_1061	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	109	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTCCAAAGTTAAGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	58124468	58157124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_58127853_58128997_58129152_58136640_58136691_58137110_58137372_58137773_58137914_58140437_58140531_58141634_58142217_58154257_58154725_58156825
101175	chr4	+	2809	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	73.8562793538911	2	136	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390084	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724_147417183_147417219
101176	chr12	-	977	1	FSM	ENSMUSG00000113431.2	ENSMUST00000221586.2	390	1	-108	-479	-108	479	mono-exon	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	540	False	NA	NA	False	NA	NA	NA	83667951	83666974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_83667000_83668000
101177	chr6	+	2326	11	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCAGTGACACGTGGC	NA	False	NA	NA	False	NA	NA	NA	144944885	145021685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144946031_144950076_144950152_144953341_144953482_144955774_144955864_144961176_144961316_144964916_144965084_144978510_144978629_144980266_144980383_144985168_144985364_144993018_144993089_145021613
101178	chrX	-	2755	11	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	3	-9	intron_retention	FALSE	canonical	0	0	junction_7	434.75488496393	3	93	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTTTACAGTTCTTGAG	NA	False	NA	NA	False	NA	NA	NA	158921349	158905213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912474_158913104_158913232_158915064_158915239_158916168_158916229_158921251
101180	chr11	-	477	1	Intergenic	novelGene_2502	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGACCTGGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	108902948	108902471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902500_108902900
101181	chr17	+	4290	8	NIC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	2467	2836	intron_retention	FALSE	canonical	3	99	junction_4	31.454534730338	1	118	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTGAACTCCAGCCTTT	NA	False	NA	NA	False	NA	NA	NA	36155034	36164347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36162049_36163306
101182	chr4	+	2426	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	76.1162761832185	3	20	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147394998	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724_147416469_147416888
101183	chr4	+	2987	3	Intergenic	novelGene_2078	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	60.5	2	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146370017	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146388574_146388614_146390758
101184	chrM	+	846	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	48	63	48	-63	mono-exon	FALSE	NA	NA	NA	NA	NA	62	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTATGTATGTGACATAT	46	False	NA	NA	False	NA	NA	NA	2798	3644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3600
101185	chr11	+	1432	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	14	-265	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	3901.83149302991	44	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGCCTCCATCCTTTA	3049	False	NA	NA	False	NA	NA	NA	75623752	75656406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655814_75656158
101186	chr17	+	1337	5	Antisense	novelGene_ENSMUSG00000001525.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGGCCGGCGAGCGCAG	2533	False	NA	NA	False	NA	NA	NA	36145710	36149127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_36146279_36146621_36146930_36147052_36147163_36147516_36147629_36148888
101187	chr17	-	1355	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4763.98890112057	155	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTTTCTCTTTCCAC	NA	False	NA	NA	False	NA	NA	NA	36149124	36145696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146484_36146823_36146927_36147045_36147166_36147519_36147629_36148888
101188	chr16	-	564	1	Intergenic	novelGene_3705	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101189	chr3	+	1044	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	12	3	12	-3	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	236	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGATGTGTTTGTCTTGCGT	3569	False	NA	NA	False	NA	NA	NA	88486926	88495723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
101190	chr7	+	1584	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	0	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	19	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
101191	chr11	+	2736	4	Antisense	novelGene_ENSMUSG00000018727.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	67	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGGGCCAGGCCCTATCTG	NA	False	NA	NA	False	NA	NA	NA	113591856	113600408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_113594192_113597241_113597381_113599614_113599681_113600212
101192	chr4	+	3226	9	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-27	182149	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	137.7256670886	2	108	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGGTTGACTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	146586456	146806001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146599345_146599500_146616526_146616611_146619877_146620005_146802050_146802525_146803109_146803368_146803701_146804103_146804518
101193	chr15	-	4246	34	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	85	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCACACAGTAAACCGCAG	NA	False	NA	NA	False	NA	NA	NA	12935200	12826150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12826253_12827311_12827376_12833913_12834746_12837365_12837455_12842138_12842254_12842385_12842619_12846159_12846293_12848135_12848292_12851879_12851967_12859473_12859546_12861763_12861851_12865112_12865183_12866645_12866732_12867686_12867753_12878738_12878913_12881707_12881837_12883252_12883349_12885071_12885179_12889701_12889811_12890117_12890257_12890570_12890632_12901186_12901246_12902667_12902769_12905682_12905785_12907406_12907480_12912595_12912642_12913984_12914143_12915424_12915529_12924138_12924284_12926076_12926158_12926289_12926396_12928948_12929040_12929748_12929804_12935082
101194	chr7	+	3544	2	Intergenic	novelGene_2884	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	77	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATCTTGCCATATCACGA	NA	False	NA	NA	False	NA	NA	NA	18431626	18435272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_18431819_18431920
101195	chr2	+	1530	12	NNC	ENSMUSG00000027374.13	novel	4481	12	NA	NA	52	129	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	419.21632909336	7	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	4019	False	NA	NA	False	NA	NA	NA	127429193	127445904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437764_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
101196	chr7	-	529	2	NNC	ENSMUSG00000050708.17	novel	943	4	NA	NA	0	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	200	16	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCTGGTGTTTTTTCTA	NA	False	NA	NA	False	NA	NA	NA	45109263	45107371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_45107591_45108953
101197	chr4	+	2841	4	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4873	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	75.7935793234933	1	54	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147395003	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724
101198	chr16	+	2081	13	Antisense	novelGene_ENSMUSG00000022789.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	31	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGTAAATATGAAAAGGAAG	NA	False	NA	NA	False	NA	NA	NA	16131246	16151814	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_16131873_16132180_16132290_16134199_16134308_16134465_16134641_16136625_16136706_16137315_16137372_16139446_16139538_16141190_16141290_16141489_16141641_16141837_16141960_16147666_16147869_16149859_16150000_16151692
101199	chr12	-	1428	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	43	1	-12	-1	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	285	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	111638729	111635795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
101200	chr5	+	1611	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	41	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCAGGATACCTCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	142888871	142891156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993
101201	chr11	-	4522	7	NNC	ENSMUSG00000039096.11	novel	4143	9	NA	NA	-158	-7	intron_retention	FALSE	canonical	1	2	junction_6	13.5123400391395	3	44	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACAGACCTGCGTAGCT	3500	False	NA	NA	False	NA	NA	NA	94439776	94430630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296_94439431_94439715
101202	chr1	-	3822	2	Intergenic	novelGene_460	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	42	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAACATCAATGGTCTCA	NA	False	NA	NA	False	NA	NA	NA	137277820	137271063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_137271530_137274464
101203	chr15	-	2274	15	Antisense	novelGene_ENSMUSG00000058655.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	37	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCCGGATGAGGCAGTCA	4944	False	NA	NA	False	NA	NA	NA	102004189	101982359	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_101982399_101990412_101990548_101992594_101992805_101993113_101993229_101994435_101994491_101994937_101995075_101997050_101997190_101997299_101997469_101998302_101998528_101999829_101999925_102001418_102001628_102002083_102002147_102003104_102003211_102003409_102003483_102003685
101204	chr6	-	1472	8	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	83	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCCGGCGCCAAGCACAC	9967	False	NA	NA	False	NA	NA	NA	67261284	67243965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67244201_67248181_67248330_67248867_67249009_67249138_67249215_67249801_67249922_67254742_67254921_67258629_67258804_67260884
101205	chr10	+	2831	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	243	15	221	multi-exon	FALSE	canonical	3	5618	junction_10	706.418033369635	2	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGACTGGCAGGCTGTGGG	2196	False	NA	NA	False	NA	NA	NA	81012479	81018089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
101206	chr9	-	4033	9	NNC	ENSMUSG00000036986.17	novel	4413	9	NA	NA	5	94	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	153.228944312098	2	92	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCCACCCCCAACCCCAA	2209	False	NA	NA	False	NA	NA	NA	58157011	58125730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137375_58137791_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
101207	chr15	+	1265	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	-189	-74	189	mono-exon	FALSE	NA	NA	NA	NA	NA	3	70	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGACCAT	88	False	NA	NA	False	NA	NA	NA	12574900	12576165	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12576200
101208	chr2	+	3502	25	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	-3	-132	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_24	181.859373135459	2	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTAAAAGTGTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	166747975	166788177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786542_166787646
101209	chr17	+	1568	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	-3185	-1132	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGAGGCGAGTCACCGCCC	NA	False	NA	NA	False	NA	NA	NA	40154058	40157960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40154841_40157174
101210	chr7	-	2748	1	Intergenic	novelGene_2924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	69	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTATAACTGAGTGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	31192466	31189718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_31189700_31192500
101211	chr14	+	1458	10	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	689.705734353427	37	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271292_30288947_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
101212	chr5	-	1605	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-17	intron_retention	FALSE	canonical	0	0	junction_3	1537.10969752397	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTACCTTACACAAACAGCT	8921	False	NA	NA	False	NA	NA	NA	142892477	142888886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890187_142890452_142890538_142890991_142891232_142891318_142891448_142892406
101214	chr5	-	2352	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	6	260	6	multi-exon	FALSE	canonical	3	916	junction_1	0	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
101215	chrX	-	3466	3	Antisense	novelGene_ENSMUSG00000081736.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	57	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTAAGATTAAAAACCAGGT	NA	False	NA	NA	False	NA	NA	NA	125262941	125082591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_125083725_125085081_125087016_125262542
101216	chr11	-	1274	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	131	228	1	-4	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	2	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGCACTGTTTCTATTT	NA	False	NA	NA	False	NA	NA	NA	33113075	33102514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
101217	chr4	-	2681	15	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	2910	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	101.243115160227	2	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	4460	False	NA	NA	False	NA	NA	NA	41119844	41114426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114984_41115039_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753
101218	chr5	-	1603	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1363	0	430	0	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	5	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	4091	False	NA	NA	False	NA	NA	NA	142891146	142888869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
101220	chr2	-	2578	12	NNC	ENSMUSG00000027210.21	novel	3718	13	NA	NA	-5	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	20.7005409758831	1	108	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTAGGCTTTGGTGTTTTT	1536	False	NA	NA	False	NA	NA	NA	115893016	115693549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_115694995_115697290_115697386_115697749_115697861_115699229_115699285_115752152_115752230_115830611_115830758_115879564_115879680_115889111_115889262_115889994_115890046_115891161_115891213_115891931_115892074_115892876
101221	chr4	+	3814	8	Intergenic	novelGene_2076	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	163.500733319207	5	56	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146370014	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146428065_146428160_146797298_146797381_146800390_146800518_146802050_146802417_146802755_146803093_146803262_146803953_146804037
101222	chr2	+	2572	7	Antisense	novelGene_ENSMUSG00000082196.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAACACTCTCTGAAAGGA	NA	False	NA	NA	False	NA	NA	NA	156631635	156681710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_156632359_156643019_156644102_156644207_156644337_156645656_156645723_156679741_156679837_156680355_156680457_156681334
101223	chr8	-	3393	3	Antisense	novelGene_ENSMUSG00000096401.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	70	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAGACTTCATTGATTT	NA	False	NA	NA	False	NA	NA	NA	20725076	20716153	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20717504_20721124_20721239_20723147
101224	chr4	+	3100	3	Antisense	novelGene_ENSMUSG00000100514.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	129	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTTTATCTAACTTTTTG	NA	False	NA	NA	False	NA	NA	NA	111588386	111803934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_111589831_111788595_111789750_111803432
101225	chr7	-	1453	10	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	0	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	9259.108645738	26	20	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAAGGGGGAGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	126398313	126394417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394918_126395140_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
101226	chr15	-	2341	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	167	-386	-151	251	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	2	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTCCTGATGCTCTTACA	607	False	NA	NA	False	NA	NA	NA	36793914	36771561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
101227	chr2	+	1212	11	NNC	ENSMUSG00000045106.13	novel	3944	18	NA	NA	7466	-795	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	66	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGGTTACGCACAACCGC	8631	False	NA	NA	False	NA	NA	NA	104830000	104847401	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_104830189_104830594_104830648_104831615_104831758_104835267_104835352_104836132_104836209_104837084_104837142_104843182_104843296_104843545_104843670_104844097_104844229_104845114_104845247_104847289
101228	chr3	+	1557	1	FSM	ENSMUSG00000104616.2	ENSMUST00000196501.2	463	1	-872	-222	-872	222	mono-exon	FALSE	NA	NA	NA	NA	NA	43	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTTTACAGAGTCAAGTA	NA	False	NA	NA	False	NA	NA	NA	41439295	41440852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41439300_41440900
101230	chr12	-	2426	4	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7554	junction_2	379.00425092896	159	37	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111637479_111637648_111638408_111638663
101231	chr2	-	4424	5	NNC	ENSMUSG00000078897.11	novel	1659	5	NA	NA	-12	2781	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	111.340693369495	2	93	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAACTTGCTTCTTGGT	NA	False	NA	NA	False	NA	NA	NA	175277612	175261311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175265399_175266555_175266617_175266821_175266949_175273972_175274028_175277518
101232	chr4	+	2530	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	33	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	1	49	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216527	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147534439_147534577_147536170_147536264_147637753_147637856_147665698_147665826_147667290_147667431_147667838
101233	chr5	-	3353	2	Antisense	novelGene_ENSMUSG00000060961.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	106	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	89357046	89351752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_89352363_89354303
101234	chr3	+	3279	8	NNC	ENSMUSG00000027940.19	novel	512	3	NA	NA	22	-4	intron_retention	FALSE	non_canonical	0	0	junction_2	1632.47242061899	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACGATCAGACCGGCTTG	NA	False	NA	NA	False	NA	NA	NA	89987770	90008199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987925_89993752_89993887_89994759_89994880_89994980_89996431_89997103_89997167_89997316_89997387_90006834_90007748_90007824
101235	chr6	+	1120	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-544	-111	544	mono-exon	FALSE	NA	NA	NA	NA	NA	43	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37782909	37784029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
101236	chr16	+	3557	1	Genic_Genomic	ENSMUSG00000022841.16	novel	NA	NA	NA	NA	2361	3487	mono-exon	FALSE	NA	NA	NA	NA	NA	11	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAGAAGGCAGCGAAAACC	NA	False	NA	NA	False	NA	NA	NA	20363589	20367146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_20363600_20367100
101237	chr15	+	2075	1	Intergenic	novelGene_3255	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	97	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGAGTAGCTGGGTAAG	NA	False	NA	NA	False	NA	NA	NA	22703016	22705091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22703000_22705100
101238	chr11	+	4957	23	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	11	-221	intron_retention	FALSE	canonical	3	2354	junction_9	201.234639576016	38	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332213	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
101241	chr7	+	501	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-19	750	-19	-750	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCAATGCATCCTGCAC	NA	False	NA	NA	False	NA	NA	NA	51396375	51396876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51396900
101243	chr4	+	3471	6	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	11	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	277.666994797725	5	105	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTTTCAGTT	2294	False	NA	NA	False	NA	NA	NA	147106317	147145253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147106458_147136962_147137048_147140055_147140183_147141715_147142355_147142436_147143595_147143931
101244	chr16	+	564	1	Intergenic	novelGene_3706	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	59	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
101245	chr4	-	2990	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-28	-26	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	108.849621037466	1	51	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAATAAAGCTGAAAGTTT	9495	False	NA	NA	False	NA	NA	NA	147894273	147838456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147889671_147889780_147891546_147891641_147893953
101246	chrX	+	2214	17	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-6325	324	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_16	822.777755153237	1	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCCCAGTCCTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	20537990	20548768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548624
101247	chrM	-	1132	1	FSM	ENSMUSG00000064352.1	ENSMUST00000082403.1	69	1	-5	-1058	-5	1058	mono-exon	FALSE	NA	NA	NA	NA	NA	2	79	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGCACCTAAAATAGATGAC	9245	False	NA	NA	False	NA	NA	NA	6943	5811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5800_6900
101248	chr15	+	1288	7	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	-3	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5045.76859028104	24	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	103148877	103153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149624_103149872_103149990_103151097_103151146_103152051_103152208_103152385_103152456_103152682
101249	chr14	+	1214	9	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	80	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1091.62069877774	2	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGGTGTGCATGTTTGT	NA	False	NA	NA	False	NA	NA	NA	21881418	21895586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881513_21881918_21881978_21882951_21883021_21887770_21887965_21888058_21888112_21888458_21888687_21890486_21890573_21893949_21894008_21895213
101251	chr3	+	305	2	Genic_Genomic	ENSMUSG00000059776.8	novel	636	1	NA	NA	-35	-224	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	2	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTCTGCTGAAGAACTT	NA	False	NA	NA	False	NA	NA	NA	58894555	58895002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_58894616_58894757
101254	chr5	+	1275	1	Intergenic	novelGene_777	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	11	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAACAAGGCCATACCTCCC	NA	False	NA	NA	False	NA	NA	NA	104797495	104798770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_104797500_104798800
101255	chr4	-	3136	7	NIC	ENSMUSG00000043962.17	novel	2744	7	NA	NA	28	365	intron_retention	FALSE	canonical	3	676	junction_3	86.636533222936	1	99	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTTGCTATTAATGTCA	NA	False	NA	NA	False	NA	NA	NA	126088156	126066270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126088109
101256	chr4	+	2356	7	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	44.8838005917007	1	41	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637714	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147641585_147641685_147646898_147646979_147661481_147661587_147665698_147665826_147667290_147668023_147668611
101257	chr2	+	2890	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	3	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	1	76	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGAGTGGATGCCCCTA	664	False	NA	NA	False	NA	NA	NA	26279370	26287129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285977_26286196
101258	chr7	+	1174	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	-21	12	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	51396373	51397638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_51396989_51397079
101259	chr18	+	1564	3	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	-3	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179710	48181446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180845_48180970_48181177_48181222
101260	chr15	-	4882	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	85	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAATCCTCTTGCAATT	9421	False	NA	NA	False	NA	NA	NA	22704824	22699846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704683
101261	chr7	-	1401	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-13	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7110.3273468661	3	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGGAGTCTGTTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395313_126395730_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
101262	chr5	-	860	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-83	1164	-83	-1164	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCGCCGTCTCCGCACGGC	NA	False	NA	NA	False	NA	NA	NA	5833638	5832778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5832800_5833600
101263	chr4	-	2108	11	NNC	ENSMUSG00000028656.15	novel	2620	13	NA	NA	-6854	-12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	368.23292900011	4	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTAGTTATTCACCTG	NA	False	NA	NA	False	NA	NA	NA	122765279	122752851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_122753754_122753801_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761510_122765252
101264	chr5	-	10705	5	NNC	ENSMUSG00000023452.20	novel	908	5	NA	NA	-128	61902	intron_retention	FALSE	non_canonical	0	0	junction_1	342.5	7	166	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACAGACTGGCTACACAAA	7706	False	NA	NA	False	NA	NA	NA	32899947	32831742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_32838140_32895108_32895491_32895731_32895879_32896125_32899616_32899658
101265	chrY	+	1147	3	Intergenic	novelGene_4714	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	38	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCTCTCAGGGCAGGGAC	NA	False	NA	NA	False	NA	NA	NA	90730251	90735007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_90730531_90732581_90733303_90734860
101266	chr7	+	3041	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	108	848	-80	241	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	1	94	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTGTGTGGTACTAAACT	NA	False	NA	NA	False	NA	NA	NA	102091009	102118130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
101267	chr17	+	2643	13	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-10	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	659.419583800785	3	54	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCAGTGGTGGCGCACG	489	False	NA	NA	False	NA	NA	NA	56610389	56630479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612191_56620123_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
101268	chr17	-	2462	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5	53	5	-53	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	3	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTGTTCTAAAATTAAA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
101269	chr2	+	876	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11257	216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11413777	11426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414149_11425685_11426075_11426131
101271	chr3	+	1130	6	NNC	ENSMUSG00000041355.14	novel	1059	6	NA	NA	225	1343	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1894.05645111227	29	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTTGGGCTGGGGCGATC	3845	False	NA	NA	False	NA	NA	NA	88487202	88497069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187_88495706_88496882
101272	chr1	-	2240	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	183	0	183	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	3	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4638	False	NA	NA	False	NA	NA	NA	55127000	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
101273	chr11	+	3975	7	NIC	ENSMUSG00000059552.14	novel	1771	11	NA	NA	1	0	intron_retention	FALSE	canonical	3	1895	junction_3	132.407200207038	13	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	NA	False	NA	NA	NA	69471228	69482698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69479374_69479451_69480536_69480614_69481589_69482175
101274	chr5	+	2128	14	NNC	ENSMUSG00000029521.8	novel	2190	14	NA	NA	35	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	78.4195966330781	2	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAAACAATGTTAGTAGT	9234	False	NA	NA	False	NA	NA	NA	110987900	111021996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_111003597_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
101275	chr2	+	496	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11302	-23	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	1	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAACCAACCTCATGGTC	NA	False	NA	NA	False	NA	NA	NA	11413732	11426008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11413994_11425773
101277	chr12	+	3233	11	NNC	ENSMUSG00000097451.12	novel	2746	13	NA	NA	13	-12	intron_retention	FALSE	canonical	0	0	junction_2	280.231350851399	1	109	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTCTATGACTAAAAAAAG	2878	False	NA	NA	False	NA	NA	NA	109612576	109628131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615681_109615769_109615810_109616505_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623266_109624486_109624556_109626156_109626242_109627179
101278	chr4	+	2399	10	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	-91	-5	multi-exon	TRUE	non_canonical	0	0	junction_6	112.657900162997	1	47	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209621	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147596958_147599053_147599227_147667776_147667993_147668160_147668409_147668576
101279	chr7	+	1913	1	NIC	ENSMUSG00000030822.16	novel	639	3	NA	NA	-1501	-214	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	8	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACACTTGTCCAAATATAA	NA	False	NA	NA	False	NA	NA	NA	127068041	127069954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_127068000_127070000
101280	chr4	+	3501	6	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-18	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	208.256956666518	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146093375	146135319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130000_146131535_146132049_146132805
101281	chr3	+	2075	3	ISM	ENSMUSG00000027796.3	ENSMUST00000029371.3	5368	6	26619	10827	26619	-10827	internal_fragment	FALSE	canonical	2	9	junction_1	0.5	22	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTAGTTGAGGTTACC	NA	False	NA	NA	False	NA	NA	NA	54689621	54697851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_54690194_54693484_54693743_54696606
101282	chr4	+	2711	10	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	29	0	multi-exon	FALSE	non_canonical	0	0	junction_1	39.9805508271765	7	48	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216523	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216737_147314798_147314886_147534439_147534577_147578832_147578927_147639766_147639926_147661481_147661587_147665698_147665826_147667290_147667431_147667838_147668409_147668576
101283	chr17	-	2164	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-2	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	3299.11183708286	65	32	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45884199	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879801_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
101284	chr4	+	3333	11	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-1	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	18.0055546984812	7	91	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	925	False	NA	NA	False	NA	NA	NA	145237359	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237525_145239475_145239644_145243730_145243846_145295287_145295386_145299203_145300051_145322279_145322345_145343683_145343746_145347127_145347255_145348721_145348860_145350277_145350921_145351005
101285	chr15	+	1390	5	NNC	ENSMUSG00000116223.2	novel	1345	2	NA	NA	-2828	-5043	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	29	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTAACGCAATGAGGCG	NA	False	NA	NA	False	NA	NA	NA	98829377	98832300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98829990_98830112_98830446_98830575_98830722_98830854_98831068_98832214
101286	chr4	+	2815	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-5	131	multi-exon	FALSE	non_canonical	0	0	junction_1	39.9805508271765	7	66	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTAATAGTAATGATTTTC	NA	False	NA	NA	False	NA	NA	NA	147216489	147669786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147447267_147447362_147449058_147449174_147536170_147536264_147586007_147586206_147661528_147661587_147665698_147665826_147667290_147667431_147668090
101287	chr18	+	2694	1	Antisense	novelGene_ENSMUSG00000073647.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGCCATCTTTGCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	4196536	4199230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_4196500_4199200
101288	chr7	+	1350	7	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3104.3193251053	1	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499711_46501295_46501419_46503406_46503531_46504400
101289	chr18	-	1528	1	Antisense	novelGene_ENSMUSG00000059040.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	35	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGTGCCGTGGACACCGAG	NA	False	NA	NA	False	NA	NA	NA	48181310	48179782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_48179800_48181300
101290	chrX	-	1095	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	92	-188	92	188	mono-exon	FALSE	NA	NA	NA	NA	NA	5	52	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79238366	79237271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237300_79238400
101291	chr1	+	1155	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	-3	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9512.68242342237	6	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAATGGTGTCTCAAAGC	NA	False	NA	NA	False	NA	NA	NA	86454444	86458416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454673_86456894_86456967_86457177_86457279_86457662
101292	chr9	+	1223	7	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	28	-524	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	562.32780080266	1	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTAGATGTAGTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	108183665	108214609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846_108214343_108214454
101293	chr9	-	1403	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1191	150	-34	85	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGGAAAGAATGTTGTGG	8291	False	NA	NA	False	NA	NA	NA	78387815	78385880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
101294	chr1	-	753	4	ISM	ENSMUSG00000026701.16	ENSMUST00000139387.8	603	5	3141	-260	3141	16	3prime_fragment	FALSE	canonical	3	1689	junction_3	61.3532576333337	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTCGGGATTCTTTACT	NA	False	NA	NA	False	NA	NA	NA	161074983	161069117	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826
101295	chrX	+	1187	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	48	-25	-48	mono-exon	FALSE	NA	NA	NA	NA	NA	6	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGGGACCACTCAAGAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13069971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070000
101296	chr4	+	2551	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	3	0	multi-exon	FALSE	non_canonical	0	0	junction_1	41.6443273447897	1	66	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216497	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147534439_147534577_147536170_147536264_147639766_147639902_147661528_147661587_147665698_147665826_147667290_147667343_147667771_147668577_147668660
101297	chr2	-	1262	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-189	-73	189	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	28824694	28823432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
101299	chr16	-	564	1	Intergenic	novelGene_3707	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101300	chr5	-	3087	18	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	0	236	intron_retention	FALSE	non_canonical	0	0	junction_1	161.124336780991	12	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTGGGTGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	31337488	31314551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31314740_31315554_31315595_31315686_31315840_31316404_31316534_31316777_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
101301	chr9	-	1936	2	Intergenic	novelGene_986	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	7	33	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	6785428	6780369	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_6781894_6785016
101302	chrX	+	5940	9	NNC	ENSMUSG00000044150.13	novel	2513	11	NA	NA	-4	-5879	intron_retention	FALSE	canonical	2	6	junction_8	202.50910473359	14	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACCCAAACCTCAACAG	NA	False	NA	NA	False	NA	NA	NA	158315710	158352214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158348218
101303	chr11	+	2589	13	NNC	ENSMUSG00000018583.6	novel	6703	12	NA	NA	16	-3966	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2046.53471344449	2	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAAGAAAACTTCATCTG	NA	False	NA	NA	False	NA	NA	NA	55360559	55391698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284_55391397_55391495
101304	chr1	-	2230	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	190	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	2471.96062313178	2	102	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4645	False	NA	NA	False	NA	NA	NA	55126993	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122221_55122322_55122890_55122967_55123691_55123945_55125924_55126101_55126937
101305	chr8	+	3829	21	NIC	ENSMUSG00000031592.11	novel	6624	38	NA	NA	-6	18666	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	50.8708167813335	1	199	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAAGAGTAAGAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	41692795	41746797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_41693001_41709032_41709148_41710827_41711074_41712172_41712344_41714047_41714219_41720223_41720402_41723477_41723588_41725280_41725498_41727136_41727336_41728689_41728845_41728962_41729190_41732787_41732931_41733058_41733189_41735616_41735758_41736592_41736784_41739001_41739200_41740718_41740939_41741045_41741192_41741667_41741859_41743757_41743930_41746494
101307	chr4	+	3048	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6_ENSMUSG00000086147.3	novel	2800	4	NA	NA	-2	182330	multi-exon	TRUE	non_canonical	0	0	junction_1	61.5137179822517	2	59	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147056430	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056445_147216523_147216818_147217303_147217441_147316807_147316901_147390101_147390223_147413438_147413566_147415724_147415863_147416278_147418088_147600206
101308	chr7	-	1687	9	NIC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-14	0	intron_retention	FALSE	canonical	3	862	junction_8	8403.10265523247	33	29	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398356	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396949_126397145_126397299_126398216
101309	chr3	+	2179	1	NIC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	9650	200	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCAACAAATGAAGTAACT	1512	False	NA	NA	False	NA	NA	NA	41566514	41568693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_41566500_41568700
101310	chr17	-	1960	10	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	16652	3	-1401	-3	3prime_fragment	FALSE	canonical	3	561	junction_9	82.9673444610202	1	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	5834	False	NA	-36	True	NA	NA	NA	45728011	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870
101311	chr4	+	2300	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-22	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	47.136397825884	6	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147637711	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646896_147646979_147661528_147661587_147665698_147665826_147667290_147667989_147668492
101312	chr6	-	3719	10	NNC	ENSMUSG00000003153.11	novel	3959	10	NA	NA	3	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	3007.53043764038	3	138	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTCATGTCACAAGC	8916	False	NA	NA	False	NA	NA	NA	122719478	122704785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713533_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
101313	chr15	+	2621	4	Intergenic	novelGene_3344	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	5	38	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAGGTATTTTCCTCATT	NA	False	NA	NA	False	NA	NA	NA	87785310	87799095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_87785451_87791516_87791647_87793598_87793787_87796932
101314	chr4	-	4827	3	Intergenic	novelGene_1909	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	79	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGCCGAATTCCGGGAC	NA	False	NA	NA	False	NA	NA	NA	100986192	100794826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_100794961_100981360_100983265_100983403
101315	chr10	-	2083	16	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	14	-3	combination_of_known_junctions	FALSE	canonical	1	2	junction_5	619.881114049747	3	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAGCCCTTAATGTCTTAC	NA	False	NA	NA	False	NA	NA	NA	116899705	116886913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891287_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
101316	chr17	-	893	5	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	74	-34	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4764.17151113391	1	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGTATGCAAAATAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	45880588	45878734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878870_45879340_45879489_45879783_45880053_45880165_45880314_45880395
101317	chr15	+	1970	12	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-1812	463	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	252.518618902769	2	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGTAGAAAAAGGTGCAAAG	NA	False	NA	NA	False	NA	NA	NA	101992646	102004097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001698_102003106_102003213_102003411_102003485_102003687
101318	chr10	-	1897	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	807.836303550004	1	72	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCCTTAATGTCTTACTG	NA	False	NA	NA	False	NA	NA	NA	116899675	116886911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890029_116890773_116890886_116891011_116891127_116891934_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
101319	chr16	+	564	1	Intergenic	novelGene_3708	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
101320	chr11	-	4463	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	2	-21	intron_retention	FALSE	canonical	3	40	junction_13	239.391338643969	4	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAAGCATGTTCTCTGCTC	NA	False	NA	NA	False	NA	NA	NA	95201032	95165105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95196971_95200860
101321	chr4	+	4276	5	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-14	-1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	34.5931712914558	4	128	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146093379	146135324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129863_146130004_146131535
101323	chr12	-	1876	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	1	6	-1	-3	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAAGACCTGTATCTGTC	NA	False	NA	NA	False	NA	NA	NA	87490597	87474852	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
101324	chr16	-	551	1	Intergenic	novelGene_3808	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGGATGAACCGACAGACAG	NA	False	NA	NA	False	NA	NA	NA	57212039	57211488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101325	chr9	+	7620	2	Antisense	novelGene_ENSMUSG00000098171.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	82	41	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTAGCAAGATTTTATC	NA	False	NA	NA	False	NA	NA	NA	93261427	93323666	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_93264923_93319541
101326	chr4	+	5455	5	Intergenic	novelGene_2020	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	70	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGTGTATATATATATT	1081	False	NA	NA	False	NA	NA	NA	145243041	145529351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_145243099_145243617_145243899_145403035_145405340_145406508_145406605_145526634
101327	chr13	+	2361	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	6	17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	134.233937586588	1	58	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACTGGAGAAAAAAGCTAC	NA	False	NA	NA	False	NA	NA	NA	62277752	62321250	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277977_62317255_62317383_62317567_62317574_62319162_62320940_62321023
101328	chr17	+	1069	4	ISM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	5912	1132	-914	-2	3prime_fragment	FALSE	canonical	3	1763	junction_1	168.239908067814	2	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTAGTAGTCAGTCGAG	NA	False	NA	NA	False	NA	NA	NA	29257513	29261215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_29257599_29259748_29259788_29260180_29260268_29260357
101329	chr13	-	1219	8	NNC	ENSMUSG00000021484.9	novel	4315	8	NA	NA	9	-149	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	853.44327788754	1	66	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTCTTGCCCAGCTGAGA	3020	False	NA	NA	False	NA	NA	NA	55510415	55494554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_55494851_55496127_55496242_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
101330	chr5	-	1245	3	ISM	ENSMUSG00000106864.4	ENSMUST00000201423.2	906	4	256	-30	256	30	intron_retention	FALSE	canonical	3	609	junction_2	27.5	2	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAATCCCTCTCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	31316469	31314757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31315112_31315486_31315595_31315686
101331	chr10	-	1992	11	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	1	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	817.067445196539	2	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	NA	False	NA	NA	NA	127358312	127353185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355125_127355253_127355381_127355498_127355581_127355839_127356004_127356786_127356985_127358156
101332	chr13	-	2167	5	NNC	ENSMUSG00000074865.12	novel	2439	5	NA	NA	7	0	intron_retention	TRUE	non_canonical	0	0	junction_1	27.617928959283	2	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706436	62664608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62666240_62666332_62666545_62667985_62668047_62668231_62668359_62706300
101333	chr13	+	2845	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-39	250	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	63.966299721025	6	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACCTCATGAACATAA	NA	False	NA	NA	False	NA	NA	NA	66261254	66270900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66268283_66270253_66270332
101334	chr5	-	2087	1	ISM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	1754	209	926	-197	mono-exon	FALSE	NA	NA	NA	NA	NA	4	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACCCTGGACGTCGAGCC	NA	False	NA	NA	False	NA	NA	NA	125465324	125463237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125463200_125465300
101335	chr7	+	3825	22	Antisense	novelGene_ENSMUSG00000088948.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTATCACTCTGAGGCGG	NA	False	NA	NA	False	NA	NA	NA	110671138	110682234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671236_110671800_110671967_110673037_110673157_110673243_110673457_110673546_110673752_110673886_110674149_110674234_110674448_110674542_110674649_110674793_110674920_110675486_110675600_110675901_110676061_110676141_110676283_110676430_110676533_110676617_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110680176_110680714_110680840_110681990
101336	chr6	-	2063	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	24	-41	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	583.751379843669	2	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTCTGTCCCTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	124942229	124935416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
101337	chr10	-	3006	15	Antisense	novelGene_ENSMUSG00000064441.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	69	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGCTGACGTCAACGCCCG	7864	False	NA	NA	False	NA	NA	NA	81018330	81012479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81012562_81013496_81013589_81013650_81013714_81013886_81014066_81014511_81014726_81014913_81015099_81015183_81015284_81015375_81015638_81015721_81015895_81015982_81016244_81016396_81016519_81016646_81016996_81017059_81017242_81017324_81017455_81017718
101338	SIRV6	+	989	5	NNC	SIRV6A	novel	574	8	NA	NA	345	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8317.47613462161	2	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTATACTTAGTTCAATC	NA	False	NA	NA	False	NA	NA	NA	1648	11835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV6_+_1736_2780_2829_3106_3165_10724_10827_11141
101339	chr18	+	3074	2	Intergenic	novelGene_4554	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	16	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATTTCTGATTTTGTTA	NA	False	NA	NA	False	NA	NA	NA	63565379	63579545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_+_63565836_63576927
101340	chr18	+	2337	9	NIC	ENSMUSG00000024234.8	novel	2626	9	NA	NA	109	-1	combination_of_known_splicesites	FALSE	canonical	3	16	junction_5	91.7591105830914	1	102	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTGTGATAACAGTATTT	109	False	NA	NA	False	NA	NA	NA	4375712	4397327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_+_4375779_4379568_4379742_4380672_4380888_4383184_4383414_4386170_4386383_4387127_4387180_4394973_4395067_4395155_4395230_4396104
101342	chr12	-	2578	7	Antisense	novelGene_ENSMUSG00002076610.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	23.1978207788768	1	89	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTCACAGTCATCTCCAA	NA	False	NA	NA	False	NA	NA	NA	22302670	21930234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_21930266_22043324_22044039_22177985_22178324_22292886_22294077_22295404_22295466_22295667_22295795_22302553
101343	chr4	+	2870	9	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	-11	-5	multi-exon	TRUE	non_canonical	0	0	junction_2	16.4312012646672	2	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209701	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147219028_147219126_147393104_147393194_147536170_147536264_147592042_147592098_147596801_147597021_147597104_147597333_147599260_147599437_147667820
101344	chr11	+	1150	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	333	16	-172	-16	multi-exon	FALSE	canonical	3	35417	junction_1	0	2	63	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCATGGTAAGCATATATG	NA	False	NA	NA	False	NA	NA	NA	62442329	62444023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
101345	chr16	+	5703	19	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-36950	-60	multi-exon	FALSE	non_canonical	0	0	junction_1	0	18	35	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGCCCTTTCCTCGGGAGC	NA	False	NA	NA	False	NA	NA	NA	16130116	16176815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16131907_16132123_16132290_16134199_16134308_16134465_16136344_16136629_16136706_16137315_16137372_16139447_16139538_16141190_16141290_16141489_16141641_16141837_16141960_16147666_16147869_16149859_16149997_16151692_16151817_16154717_16154876_16156452_16156543_16158858_16158932_16159285_16159332_16163860_16164010_16176627
101346	chr5	+	1737	5	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGAAGCCGGCTTTGCACA	NA	False	NA	NA	False	NA	NA	NA	142888877	142891375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320
101347	chr19	-	1035	1	Intergenic	novelGene_1216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	14	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TATTAAAAAAAAAAAGATCT	5992	False	NA	NA	False	NA	NA	NA	21646807	21645772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_-_21645800_21646800
101348	chr5	-	2198	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	260	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	458	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCCAAAAAATCTTCATT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125463057_125463198_125465329_125466760
101349	chr4	+	2333	10	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	25	0	multi-exon	TRUE	non_canonical	0	0	junction_1	65.9966329107444	1	74	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147390155	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147390292_147447267_147447362_147449058_147449065_147592042_147592098_147595209_147595309_147596806_147597082_147599014_147599187_147599270_147599286_147668090_147668493_147668576
101350	chr10	+	3059	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	2488.63697158331	3	65	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2199	False	NA	NA	False	NA	NA	NA	81012482	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016962_81017037_81017252_81017339_81017460_81017722
101351	chr7	+	1148	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	95	-11	95	11	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396489	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
101352	chr1	-	7469	30	NNC	ENSMUSG00000026193.16	novel	7797	44	NA	NA	-5043	-84	intron_retention	FALSE	non_canonical	0	0	junction_13	795.897009631615	2	216	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGTTGGTGATTATTTT	NA	False	NA	NA	False	NA	NA	NA	71668546	71624768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71643750_71644009_71644243_71645043_71645200_71645861_71646017_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666510_71667210_71667306_71667566_71667696_71668474
101353	chrM	+	1345	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	1056	-577	1056	577	mono-exon	FALSE	NA	NA	NA	NA	NA	2	25	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGACAAACATACGAAAA	102	False	NA	5	True	NA	NA	NA	12797	14142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12800_14100
101354	chr6	-	2909	16	NNC	ENSMUSG00000063884.7	novel	2666	25	NA	NA	-22	0	intron_retention	FALSE	non_canonical	0	0	junction_9	317.858556943528	13	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATTCTTTGTAAGCGTG	5728	False	NA	NA	False	NA	NA	NA	71875442	71857626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71861606_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866603_71869448_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323
101355	chr11	+	1344	6	Antisense	novelGene_ENSMUSG00000078812.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	124	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGCGCATGGACCCTCCC	6764	False	NA	NA	False	NA	NA	NA	69807548	69812217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_69808164_69808250_69808331_69808425_69808555_69808742_69808850_69809978_69810163_69811988
101356	chr16	+	1638	10	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	792.323929890132	1	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTCACTTTATATAGGT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932684	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929443_22930300_22930343_22930566_22930647_22931100_22931212_22931916
101357	chr9	+	1793	9	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	4	intron_retention	FALSE	canonical	3	16882	junction_3	1404.88054986002	240	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTCCACATGGTAG	NA	False	NA	NA	False	NA	NA	NA	64080655	64085952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084760_64085002_64085087_64085178_64085300_64085504
101360	chr2	+	3429	2	Intergenic	novelGene_2865	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	74	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGCCTACAGAGAACCTG	4265	False	NA	NA	False	NA	NA	NA	181561619	181566459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_181562315_181563725
101361	chr1	+	2950	11	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	28	-246	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	205.331658542953	1	105	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177587	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183765_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
101362	chr4	+	3692	4	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1738	1186	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	39.2626483512709	3	67	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCATCCGCTACGGCTCC	2844	False	NA	NA	False	NA	NA	NA	147233212	147266222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147233279_147260303_147260362_147261203_147261331_147262781
101363	chr15	-	1886	9	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-13	intron_retention	FALSE	canonical	3	16287	junction_8	4940.85817286582	9	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATTTCTACTCACACTGG	3572	False	NA	NA	False	NA	NA	NA	79967553	79962008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79966784_79967524
101364	chr6	-	3703	16	NIC	ENSMUSG00000030172.16	novel	3865	18	NA	NA	325	109	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	37.4519544067982	1	137	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTTGCCCCAAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119801862	119551864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_119552724_119571745_119571935_119597271_119597371_119607563_119607709_119671531_119671693_119699133_119699270_119720248_119720443_119726798_119726940_119728160_119728302_119730219_119730358_119738104_119738273_119750694_119750863_119756437_119756594_119760349_119760425_119773867_119774285_119801346
101365	chr8	+	3227	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	2992	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	751.072373343608	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111763539	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650_111781802_111781865
101366	chr10	+	3019	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	28	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2584.92960315256	3	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2209	False	NA	NA	False	NA	NA	NA	81012492	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014549_81014727_81014914_81015089_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
101368	chr6	+	3661	9	NIC	ENSMUSG00000056666.14	novel	3027	11	NA	NA	1	37	intron_retention	FALSE	canonical	3	404	junction_1	60.0102855767243	1	143	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTGATTAGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	72575611	72584462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_72575780_72577955_72578139_72578458_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
101369	chr4	+	1039	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	12	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTCTTCTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	91739939	91740978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739900_91741000
101370	chr4	+	4162	9	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	410	4	NA	NA	-23	183393	multi-exon	TRUE	non_canonical	0	0	junction_1	171.028323677688	8	155	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCGAAAATTCCATCTTAG	NA	False	NA	NA	False	NA	NA	NA	146033844	146318718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034024_146094927_146095022_146102109_146102186_146126784_146126867_146129876_146130004_146131535_146132730_146132985_146134326_146253607_146254575_146318615
101371	chr17	+	3376	9	NNC	ENSMUSG00000061607.16	novel	649	4	NA	NA	121	2129	intron_retention	FALSE	canonical	3	8	junction_1	51.436702606213	1	73	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTAGACCCTGAACTCCAG	9511	False	NA	NA	False	NA	NA	NA	36152688	36163640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152771_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36162049_36163306
101372	chr15	-	4115	28	NNC	ENSMUSG00000036606.18	novel	6394	36	NA	NA	-448	-305	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	71.1060955021319	1	138	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTGGAGCCTCGATAGT	NA	False	NA	NA	False	NA	NA	NA	89050448	89041533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_89041743_89041837_89041999_89042103_89042259_89042438_89042524_89042627_89042729_89042829_89042987_89043161_89043309_89043429_89043497_89043663_89043846_89043975_89044206_89044363_89044465_89044570_89044711_89044809_89044987_89045087_89045316_89045426_89045560_89045877_89046049_89046188_89046326_89046453_89046563_89046649_89046799_89046889_89047051_89047125_89047208_89047480_89047574_89048214_89048317_89048415_89048525_89048622_89048738_89049449_89049604_89049912_89050033_89050108
101373	chr14	-	5324	19	Antisense	novelGene_ENSMUSG00000021767.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	151	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGACATGGTGCTGGAG	NA	False	NA	NA	False	NA	NA	NA	21719606	21531569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21531622_21566693_21567565_21580321_21580432_21659819_21659930_21668958_21669074_21669283_21669368_21672021_21672156_21674900_21675828_21676784_21676903_21678876_21678995_21681387_21681530_21684541_21684704_21687612_21687709_21707945_21708026_21710809_21711041_21711493_21711654_21712220_21712533_21714522_21714817_21718398
101374	chr12	-	1224	5	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-10	-2	intron_retention	FALSE	non_canonical	0	0	junction_2	3472.23782307606	592	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638727	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636694_111637875_111638014_111638199_111638408_111638663
101375	chr17	+	2058	1	Intergenic	novelGene_194	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	60	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGGTTTGGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	40153887	40155945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
101377	chr2	+	3156	23	Intergenic	novelGene_2637	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	81	140	12	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGTGTCTGCAAGCAGGT	NA	False	NA	NA	False	NA	NA	NA	62161975	62241635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_62163058_62164594_62164676_62164941_62165014_62175399_62175465_62178161_62178263_62178848_62178899_62182464_62182663_62184884_62184952_62186958_62187059_62187303_62187354_62189128_62189290_62190943_62191061_62193005_62193059_62195281_62195406_62203097_62203202_62204721_62204871_62208547_62208668_62209439_62209512_62209618_62209674_62215517_62215586_62216773_62216869_62217409_62217507_62241560
101378	chr14	+	1188	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-182	-670	-182	670	mono-exon	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTGAGTTGTTCTA	NA	False	NA	NA	False	NA	NA	NA	13669255	13670443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670400
101379	chr3	+	1059	2	Genic_Genomic	ENSMUSG00000069014.5	novel	1488	1	NA	NA	-20	8	multi-exon	FALSE	canonical	0	0	junction_1	0	3	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAATGTTCAACATG	5420	False	NA	NA	False	NA	NA	NA	54388838	54390354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_54389085_54389541
101380	chr4	-	1117	2	Intergenic	novelGene_1942	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAAATTGCCTTAGCTCC	NA	False	NA	NA	False	NA	NA	NA	124252215	124246967	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_124247112_124251242
101381	chr14	-	4228	19	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-147	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	67.7528187195518	3	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655384	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54645959_54646506_54649041_54649104_54654045_54654228_54655357
101382	chr5	-	1190	1	FSM	ENSMUSG00000094708.2	ENSMUST00000180167.2	1002	1	-62	-126	-62	126	mono-exon	FALSE	NA	NA	NA	NA	NA	3	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGGAGCCCTCCCTACT	NA	False	NA	NA	False	NA	NA	NA	106011630	106010440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_106010400_106011600
101383	chr12	-	1785	6	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7560	junction_2	328.125341904584	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637782_111637858_111638408_111638663
101384	chr19	+	2567	8	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	-115	-1344	intron_retention	TRUE	non_canonical	0	0	junction_1	400.351886036598	1	150	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAATCAACAGAAACCAGCTG	1518	False	NA	NA	False	NA	NA	NA	8923648	8928323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8924122_8924162_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926941_8927431_8927754_8928275
101385	chr12	+	3249	1	Intergenic	novelGene_4399	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	91	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	68607021	68610270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68607000_68610300
101386	chr5	+	546	1	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACTT	NA	False	NA	NA	False	NA	NA	NA	142888870	142889416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142888900_142889400
101387	chr15	-	3960	1	Intergenic	novelGene_3247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCACGCAGGCCCCAAAGCT	9370	False	NA	NA	False	NA	NA	NA	22704875	22700915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22700900_22704900
101388	chr1	+	1208	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-4	12	-4	-12	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	3	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTCAAAGCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	86454443	86458422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
101389	SIRV5	+	1455	10	ISM	SIRV5A	SIRV508	2085	17	4560	0	-2633	0	3prime_fragment	FALSE	canonical	3	2297	junction_3	2823.07206364684	2	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	5568	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV5_+_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
101390	chr5	-	1566	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	1650.86546998839	1	43	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142889968_142890387_142890538_142890991_142891232_142891318_142891448_142892406
101391	chr4	+	1933	7	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-242717	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	39.0939040431284	3	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395016	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147578832_147578926_147637751_147637884_147639766_147639852_147665698_147665826_147667290_147667435_147668428
101392	chr4	+	2553	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0169885798519	1	39	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206906	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207842_146291416_146291510_146365127_146365249_146388486_146388614_146390758_146390897_146391646_146392337_146392757_146393429_146552609
101393	chr13	+	6874	46	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	4	68210	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	462.90978029348	1	83	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCCCTGGCCCACGCGCG	NA	False	NA	NA	False	NA	NA	NA	6598198	6698761	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6611975_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620743_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629561_6629685_6630159_6630209_6631628_6632437_6632544_6634638_6634739_6636517_6636628_6637086_6637150_6638524_6638690_6647894_6648050_6648776_6648863_6650631_6650703_6652748_6652896_6653114_6653184_6653433_6653500_6654991_6655117_6655670_6655765_6664739_6664834_6669206_6669322_6669556_6669601_6670921_6671090_6671943_6672132_6675170_6675249_6685959_6686037_6698608
101394	chr19	-	1862	1	NIC	ENSMUSG00000096370.9	novel	2590	3	NA	NA	8059	553	mono-exon	FALSE	NA	NA	NA	NA	NA	1	83	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGATGGTCTAGAGGGGG	NA	False	NA	NA	False	NA	NA	NA	4843971	4842109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_-_4842100_4844000
101395	chr7	+	7310	5	Antisense	novelGene_ENSMUSG00000109596.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	29	47	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATACTAGCAAGATTTTATC	1361	False	NA	NA	False	NA	NA	NA	102269517	102488283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_102270328_102272304_102274195_102446836_102447398_102453811_102453823_102484245
101396	chr4	+	2895	7	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159917	182161	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	172.884997099871	4	97	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	NA	NA	NA	146426566	146806013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146428065_146428145_146616510_146616611_146800390_146800518_146802050_146802245_146802320_146804395_146805840
101397	chr5	-	2071	4	NIC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	canonical	3	4052	junction_2	99.7374330708163	11	64	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_142889697_142889821_142890538_142890991_142891448_142892406
101398	chrM	+	2054	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	-472	0	472	mono-exon	FALSE	NA	NA	NA	NA	NA	93	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGAGCCGTAGCCCAAACA	-3	True	NA	22	True	NA	NA	NA	1093	3147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_3100
101399	chr12	-	1342	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	356	30	300	-30	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	2	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAATAAACTAGGGTTTG	NA	False	NA	NA	False	NA	NA	NA	111638416	111635824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
101400	chr15	-	5187	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	179	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9794	False	NA	NA	False	NA	NA	NA	22705096	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704579_22704669
101401	chr19	+	4301	2	Intergenic	novelGene_1223	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3428	junction_1	0	6	125	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTAGACGATTTTGGAGG	1232	False	NA	NA	False	NA	NA	NA	22699890	22704405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763
101402	chr18	+	1797	2	FSM	ENSMUSG00000057561.11	ENSMUST00000235973.2	2651	2	919	-65	630	-6	multi-exon	FALSE	canonical	3	1710	junction_1	0	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGTATATCATGAGAGGCT	NA	False	NA	NA	False	NA	NA	NA	46731710	46742310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_46731768_46740570
101403	chr4	+	4712	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-33246	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	96.3207532154935	2	128	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTTTGTCTTCGGGATGC	NA	False	NA	NA	False	NA	NA	NA	146500233	146554734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146500373_146502756_146502850_146547961_146548020_146548860_146548984_146550435
101404	chr12	-	2980	1	NIC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	215	231	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCACTTAGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	110661891	110658911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110658900_110661900
101405	chr16	+	1602	7	NNC	ENSMUSG00000072419.6	novel	1948	7	NA	NA	11	-307	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	217.10321406086	1	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTGTGAGAAATATCCAT	NA	False	NA	NA	False	NA	NA	NA	48130850	48139779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137678_48137847_48138995
101406	chr1	-	2031	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	183	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1863.58393717833	8	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4638	False	NA	NA	False	NA	NA	NA	55127000	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117391_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
101407	chr1	-	1768	9	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	1094	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2773.79879125632	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	5549	False	NA	NA	False	NA	NA	NA	55126089	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117391_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121295_55123685_55123945_55125924
101408	chr14	-	4490	3	Antisense	novelGene_ENSMUSG00000022010.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	12	116	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGATCTAGAGAACACATC	NA	False	NA	NA	False	NA	NA	NA	76728659	76723934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_76724679_76724742_76726484_76726654
101409	chr16	-	564	1	Intergenic	novelGene_3709	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101410	chr17	-	1224	4	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	794	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4503.49930609521	62	26	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAATGTCTCCTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	36149124	36145702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146544_36147127_36147166_36147519_36147629_36148888
101411	chr15	+	2190	10	Antisense	novelGene_ENSMUSG00000022234.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACACCGCACCTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	31591030	31601910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_31591202_31592430_31592612_31592791_31592930_31593012_31593783_31594244_31594393_31594479_31594672_31595789_31595990_31597556_31597721_31598144_31598207_31601746
101412	chr13	-	4422	4	NNC	ENSMUSG00000112964.2	novel	1332	4	NA	NA	-6011	3065	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	12.3917535302941	87	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTCAAGTGCATGGAA	NA	False	NA	NA	False	NA	NA	NA	74598124	74579834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_74583936_74585699_74585761_74585978_74586106_74597991
101413	chr17	+	1816	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	9	24	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCATTAACGGGAGACTG	NA	False	NA	-1	True	NA	NA	NA	40157267	40159083	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159100
101414	chr15	-	1221	9	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	40	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	10103.8451150725	4	60	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	4381	False	NA	NA	False	NA	NA	NA	79966744	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965230_79965815_79965985_79966590
101415	chr8	-	1810	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	113	996	113	-996	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	1	96	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTGTGTCACATTTTT	NA	False	NA	NA	False	NA	NA	NA	86281860	86265257	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
101416	chr17	-	3104	4	Intergenic	novelGene_245	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	66	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCATCCCTGAAGAGGCAA	NA	False	NA	NA	False	NA	NA	NA	44350403	44147169	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_44147390_44328659_44328830_44331841_44332013_44347860
101417	chr5	-	1148	4	NNC	ENSMUSG00000029580.15	novel	536	4	NA	NA	131	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	1920.58602167845	3	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	9953	False	NA	NA	False	NA	NA	NA	142891445	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889608_142890492_142890538_142890991_142891232_142891318
101418	chr19	+	2413	18	Antisense	novelGene_ENSMUSG00000024853.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGGAAAGCCAAGGCCAAG	NA	False	NA	NA	False	NA	NA	NA	5324337	5343243	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_5324558_5324821_5325004_5325089_5325192_5329296_5329401_5329499_5329641_5329869_5329978_5333670_5333781_5333887_5333975_5334601_5334755_5336218_5336439_5336603_5336685_5336837_5336954_5337077_5337313_5337562_5337655_5337937_5338035_5338331_5338444_5341333_5341450_5343106
101419	chr17	-	2187	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4347.76321802372	12	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881366_45881461_45881493_45881591_45881726_45881943_45882074_45882686_45882838_45884092
101420	chr12	-	1428	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	43	1	-12	-1	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	1046	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	111638729	111635795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
101421	chr2	+	1607	10	Fusion	ENSMUSG00000059005.14_ENSMUSG00000093242.4	novel	1074	10	NA	NA	14	-1	multi-exon	FALSE	non_canonical	0	0	junction_9	3578.14906976108	2	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGTTTGGTTTTTGTGCA	7508	False	NA	NA	False	NA	NA	NA	75489637	75496464	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495499_75495906
101422	chr11	+	5179	3	Intergenic	novelGene_2302	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	2	238	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57433760	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57433952_57445841_57449195_57449288
101423	chr17	+	1909	1	Intergenic	novelGene_268	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATATAGTCAAGTTGACA	NA	False	NA	NA	False	NA	NA	NA	56527472	56529381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_56527500_56529400
101424	chr2	-	4065	5	NNC	ENSMUSG00000078862.11	novel	1807	5	NA	NA	-10	2275	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_3	15.5161206491829	3	145	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTTTAATTGTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	177599100	177585054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177588804_177589962_177590024_177590229_177590330_177595474_177595530_177599000
101425	chr6	-	2793	10	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-322	-13	combination_of_known_splicesites	FALSE	canonical	3	151	junction_9	1239.05241571488	1	62	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGGTTGGGAGATAAACT	8163	False	NA	NA	False	NA	NA	NA	145022232	144944896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_145021614
101426	chr17	+	1261	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	90	11	90	-11	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	2	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACAGTAGATAGCTGAAT	3126	False	NA	NA	False	NA	NA	NA	35817004	35821658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
101427	chr4	+	2511	7	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	16	1909	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	37.1214223865412	4	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145136851	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145159036_145159152_145160315_145160385_145173287_145173346_145176036_145176277_145176445
101428	chr11	+	2024	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	70	6	-22	-6	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACAGGTGTAACTATGGA	3061	False	NA	NA	False	NA	NA	NA	75623764	75656665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
101429	chr11	-	4070	22	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	-1	975	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	244.844751589558	2	196	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGGCCTTCTGTCCCT	NA	False	NA	NA	False	NA	NA	NA	97078708	97052360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066673_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
101430	chr10	+	3243	1	Intergenic	novelGene_3386	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCTTTGTGAAAACATC	NA	False	NA	NA	False	NA	NA	NA	7416921	7420164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_7416900_7420200
101431	chr13	-	3476	9	NNC	ENSMUSG00000021546.19	novel	2585	12	NA	NA	-310	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	3015.47900164717	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTGGTGGTCTTTTTTT	8902	False	NA	NA	False	NA	NA	NA	58546179	58539764	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540284_58541001_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58543108_58543387_58543502_58544001_58544074_58544640
101432	chr2	+	2170	11	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	-5	381	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4902.70580802071	2	91	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGACTGGCTGGCATGCT	7489	False	NA	NA	False	NA	NA	NA	75489618	75496846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492925_75493015_75493092_75493188_75493270_75493914_75494008_75495371_75495495_75495577_75495646_75495741
101433	chr3	+	8739	12	NIC	ENSMUSG00000027680.16	novel	2127	15	NA	NA	-1	-1548	intron_retention	FALSE	canonical	3	1060	junction_6	88.6558952839293	3	127	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCCCCATTGCTGCAGAT	4855	False	NA	NA	False	NA	NA	NA	34074252	34121938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_34074313_34093675_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976
101435	chr11	+	2493	3	Intergenic	novelGene_2238	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	32	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCCATCCAGGGATCCA	NA	False	NA	NA	False	NA	NA	NA	26686274	27012375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_26687895_26868583_26868836_27011754
101436	chr1	+	2451	15	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-11	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	95.2701047398545	8	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAACCACAAGTATAC	NA	False	NA	NA	False	NA	NA	NA	132405132	132433389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501_132432156_132433180
101437	chr4	-	2592	6	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	17	63800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.011185910489	2	106	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994030	146912352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913241_146913913_146914305_146976181_146977116_146978205_146978333_146982168_146982273_146993882
101438	chr4	+	460	4	FSM	ENSMUSG00000028936.16	ENSMUST00000103191.11	474	4	10	4	-4	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	720	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCGGTGGTTTATCCTT	NA	False	NA	NA	False	NA	NA	NA	152410319	152416933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
101439	chr11	+	239	1	Intergenic	novelGene_2517	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCGGATGCCTGCATGAG	NA	False	NA	NA	False	NA	NA	NA	108902709	108902948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902700_108902900
101441	chr17	+	1629	11	ISM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	1415	570	1322	-59	3prime_fragment	FALSE	canonical	3	3235	junction_7	188.129636155498	1	20	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTGTCAGGTGCAATGC	NA	False	NA	NA	False	NA	NA	NA	13136683	13143384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
101442	chr16	+	1757	12	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	678.844984069776	2	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6058	False	NA	NA	False	NA	NA	NA	22926512	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916_22932138_22932272
101443	chr1	+	2943	25	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	-2063	594	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	217.150229615863	2	95	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACCTTTTCTTCAAGCTC	5752	False	NA	NA	False	NA	NA	NA	171925239	171947510	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171925351_171927234_171927335_171928945_171929104_171929685_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443
101444	chr14	+	711	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-1	-27	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	11	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	46321483	46322430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_46321715_46321950
101445	chr16	-	493	1	Intergenic	novelGene_3829	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	35	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGAATGCGAGTGCCTAG	NA	False	NA	NA	False	NA	NA	NA	57212033	57211540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101446	chrM	+	1553	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	-711	-161	711	mono-exon	FALSE	NA	NA	NA	NA	NA	855	67	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGCATGATACTGACATTTT	-11	True	NA	NA	False	NA	NA	NA	7765	9318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_9300
101448	chr15	-	5162	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	201	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTCTTGCAATTTACAAC	9795	False	NA	NA	False	NA	NA	NA	22705095	22699840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
101449	chr4	+	2294	6	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	628	4	NA	NA	-50745	-5	multi-exon	TRUE	non_canonical	0	0	junction_2	39.3984771279297	3	46	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395014	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147395147_147447267_147447353_147665698_147665826_147667290_147667446_147667771_147668493_147668576
101450	chrUn_JH584304v1	-	4052	5	Intergenic	novelGene_4679	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	662	junction_3	102.027876092762	1	135	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTTGTCCTGGGCTCT	NA	False	NA	NA	False	NA	NA	NA	59711	53134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985_58836_59591
101451	chr6	-	3932	13	NIC	ENSMUSG00000040669.15	novel	3612	14	NA	NA	0	-21	intron_retention	FALSE	canonical	3	372	junction_8	207.796307848709	2	99	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTTTTCCTCAGTAAA	9089	False	NA	NA	False	NA	NA	NA	122316604	122294729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
101452	chr5	+	6529	46	NIC	ENSMUSG00000029516.20	novel	6213	47	NA	NA	-7	-113	combination_of_known_junctions	TRUE	canonical	3	9	junction_30	8.86847656270286	29	98	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCTAACCCCCAGATGT	8474	False	NA	NA	False	NA	NA	NA	115983329	116136444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115983361_115984342_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452_116063559_116064517_116064662_116065894_116066015_116071456_116071628_116071879_116071931_116072637_116072692_116074787_116074929_116076737_116076864_116079895_116079992_116083843_116083961_116084888_116084999_116085965_116086141_116090510_116090709_116099202_116099257_116105946_116106145_116107022_116107217_116109301_116109438_116111786_116111892_116117413_116117555_116117820_116117929_116119708_116119872_116120141_116120307_116122850_116122989_116123463_116123645_116123777_116123870_116124617_116124723_116124952_116125123_116126214_116126296_116126456_116126593_116128386_116128527_116130669_116130763_116132046_116132156_116132270_116132400_116133451_116133533_116135550_116135630_116135732
101453	chrX	-	718	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	-37	-30	-37	30	mono-exon	FALSE	NA	NA	NA	NA	NA	124	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGGCCCAAGAACTTTG	NA	False	NA	NA	False	NA	NA	NA	151693188	151692470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_151692500_151693200
101454	chr16	+	2540	9	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_1	777.733154349871	1	96	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927449_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
101455	chr5	+	5842	11	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	405	-14	intron_retention	FALSE	non_canonical	0	0	junction_8	1757.80717088081	9	85	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864466	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129870796_129871414_129871563_129872185_129873189_129873678_129874497_129874588
101456	chr5	-	2351	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	7	260	5	multi-exon	FALSE	canonical	3	916	junction_1	0	3	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCATTTGTGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	125466818	125463035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
101457	chr3	-	3554	25	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-5	521	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	322.559544459968	3	62	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGTGCAGTAAAAGGTT	3542	False	NA	NA	False	NA	NA	NA	89959787	89906925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909176_89909585_89909809_89919984_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
101458	chr17	-	1983	1	FSM	ENSMUSG00000117818.2	ENSMUST00000235158.2	2711	1	-1386	2114	-1386	-2114	mono-exon	FALSE	NA	NA	NA	NA	NA	12	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATCTGATTGGAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31772617	31770634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_31770600_31772600
101459	chr4	-	1614	1	FSM	ENSMUSG00000081953.2	ENSMUST00000118949.2	1016	1	15	-613	15	613	mono-exon	FALSE	NA	NA	NA	NA	NA	1	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAATGAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48345215	48343601	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_48343600_48345200
101460	chr4	+	2344	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	1	-9	multi-exon	TRUE	non_canonical	0	0	junction_1	41.6443273447897	1	45	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147216495	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578927_147639766_147639908_147661505_147661587_147665698_147665826_147667290_147667445_147668191_147668410_147668576
101461	chr12	-	3951	4	NIC	ENSMUSG00000079036.11	novel	2154	8	NA	NA	0	-12	intron_retention	FALSE	canonical	3	11	junction_3	111.770598399877	8	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTTTAAATTAAAGACCT	NA	False	NA	NA	False	NA	NA	NA	87490606	87474861	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_87478364_87480888_87480980_87485166_87485330_87490411
101463	chr4	-	4259	21	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	8	18310	intron_retention	FALSE	non_canonical	0	0	junction_1	112.717833549088	30	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCAGGCGCAACCGCCGAG	9143	False	NA	NA	False	NA	NA	NA	155976175	155954025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155954177_155956582_155956680_155957304_155957378_155959591_155959821_155969551_155969653_155969742_155969778_155970020_155970159_155970546_155970611_155971250_155971444_155971571_155971656_155971887_155971977_155972059_155972225_155972311_155972418_155972502_155972567_155972638_155972782_155972850_155972981_155973074_155973626_155973890_155975127_155975232_155975697_155975814_155975873_155976087
101464	chr13	-	2560	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	855	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2061.95587335632	1	82	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	6857	False	NA	NA	False	NA	NA	NA	58548224	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146
101465	chr7	-	1344	9	NIC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	287	junction_8	6630.75357708308	13	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126399216	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399173
101466	chr17	-	2622	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	44	6	0	-6	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTATCTGGTGCCAATAT	4817	False	NA	NA	False	NA	NA	NA	25179619	25161449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
101467	chr9	+	3276	1	Intergenic	novelGene_987	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCTGTAGGCCAACTTTC	NA	False	NA	NA	False	NA	NA	NA	6975831	6979107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_6975800_6979100
101468	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
101469	chr17	+	1727	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	98	24	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-1	True	NA	NA	NA	40157267	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159000
101470	chr3	-	2683	11	Intergenic	novelGene_3114	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGCAGGTGATCTTCCGGG	NA	False	NA	NA	False	NA	NA	NA	41568778	41510171	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41510256_41535634_41535715_41543376_41543464_41546122_41546273_41548198_41548389_41551048_41551260_41554454_41554631_41555807_41555916_41558901_41559159_41564236_41564354_41567555
101471	chr16	+	3470	8	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-6	intron_retention	FALSE	canonical	0	0	junction_5	694.861959569772	14	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTATATAGGTGGTCTG	6053	False	NA	NA	False	NA	NA	NA	22926507	22932690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22929474_22929878_22930014_22930252_22930343_22930566
101472	chr2	-	2708	11	Antisense	novelGene_ENSMUSG00000039678.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	75	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTCCGGCAGGAAGC	8210	False	NA	NA	False	NA	NA	NA	30040649	30023808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30023924_30024807_30024881_30025418_30025584_30026859_30027193_30027291_30027392_30030484_30030568_30032271_30032431_30036661_30036873_30037371_30037535_30038631_30039006_30039717
101473	chr8	-	1286	4	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	8	-372	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3636.96249942479	5	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCCTGCCCTTATTAAC	NA	False	NA	NA	False	NA	NA	NA	46664059	46660205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661571_46662058_46662546_46663848
101474	chr4	+	3154	10	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	68	3	multi-exon	TRUE	non_canonical	0	0	junction_7	166.383611491155	2	106	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	145311840	145431014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145422723_145422806_145425813_145425941_145427474_145427955_145428121_145428399_145428986_145429338_145429675
101475	chr14	-	1906	7	NNC	ENSMUSG00000007589.10	novel	3130	8	NA	NA	0	1105	intron_retention	FALSE	non_canonical	0	0	junction_1	119.891617722008	1	112	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTAGGTCATTCCTCCGA	NA	False	NA	NA	False	NA	NA	NA	55919232	55916558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_55916864_55916974_55917063_55917322_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
101477	chr4	+	2468	5	NNC	ENSMUSG00000001333.10	novel	2042	5	NA	NA	6725	1877	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	4.7169905660283	1	71	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACCAGATGGATTATTG	NA	False	NA	NA	False	NA	NA	NA	129188148	129204229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_129188170_129200134_129200260_129200420_129200507_129201845_129203651_129203798
101478	chr9	+	5182	30	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	9	-158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.511754119935	1	145	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTAATGATAAGCTATTT	NA	False	NA	NA	False	NA	NA	NA	72569728	72656976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577234_72577407_72578519_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407_72654541_72654597
101479	chr2	+	5195	19	NIC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-4412	2964	intron_retention	FALSE	canonical	3	389	junction_9	52.271519285315	4	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAGAACAAATAGTAAATG	2811	False	NA	NA	False	NA	NA	NA	51975172	52000701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922
101480	chr5	-	4051	27	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	1	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	270.860845515065	2	128	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTATACAGTTAGTCTTT	8177	False	NA	NA	False	NA	NA	NA	100564024	100509513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511696_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530720_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553506_100555025_100555140_100555892_100555973_100563961
101481	chr4	+	3373	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	2	-1905	multi-exon	TRUE	non_canonical	0	0	junction_1	37.1441240361544	4	91	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTCACATTATAGGAT	NA	False	NA	NA	False	NA	NA	NA	146206902	146552844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207098_146207266_146207369_146207696_146207846_146291416_146291514_146368119_146368239_146380843_146381003_146384326_146384431_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393458_146552638
101482	chr6	+	436	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	-62	-41	-62	41	mono-exon	FALSE	NA	NA	NA	NA	NA	4	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48500389	48500825	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_48500400_48500800
101483	chr5	+	251	1	Intergenic	novelGene_964	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTCCGCGCAGTCCGCCC	NA	False	NA	NA	False	NA	NA	NA	146197833	146198084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
101484	chr15	-	3213	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-47	500	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	2	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCCAAATCAAGGCTTCA	711	False	NA	NA	False	NA	NA	NA	36793810	36770513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771428_36771499_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
101485	chr14	-	3111	25	Antisense	novelGene_ENSMUSG00000030662.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	73	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAAGGAGGGAGCTGT	NA	False	NA	NA	False	NA	NA	NA	121183516	121148650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_121148754_121154765_121154847_121157332_121157525_121159534_121159640_121160450_121160548_121160891_121160996_121163610_121163734_121163822_121163946_121165869_121165955_121166709_121166820_121170253_121170381_121170462_121170551_121170639_121170813_121172438_121172659_121173833_121173910_121175968_121176110_121176184_121176308_121176869_121176969_121178233_121178405_121179041_121179154_121179239_121179296_121180058_121180184_121181091_121181310_121181742_121181972_121183486
101486	chr17	-	2370	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-328	1	intron_retention	FALSE	canonical	0	0	junction_9	3474.27917739337	8	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45882836	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882501_45882690
101487	chr15	+	2458	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	69	544	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	232.339037984211	3	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTACCTGAATTTACCTGAA	NA	False	NA	-25	True	NA	NA	NA	101982367	102004178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990586_101992438_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
101488	chr16	-	564	1	Intergenic	novelGene_3710	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	15	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101489	chr1	-	3095	23	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	7898	1565	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	219.362430769396	3	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGCCCAAACAGCTCCA	NA	False	NA	NA	False	NA	NA	NA	84754121	84720883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739896_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037
101490	chr17	+	835	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	46	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2073.64213101007	3	36	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3082	False	NA	NA	False	NA	NA	NA	35816960	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817216_35820304_35820436_35820877_35821037_35821184_35821269_35821461
101491	chrX	+	2300	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	134	128	-46	-128	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGCTACGCTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
101492	chr12	-	4450	1	Intergenic	novelGene_4373	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	148	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCGACACCAGTTATGAA	NA	False	NA	NA	False	NA	NA	NA	68609479	68605029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_68605000_68609500
101493	chrX	-	2331	15	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	24	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGCTCGGAAGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	20542297	20524659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20524765_20534686_20534805_20534930_20534999_20535091_20535255_20535364_20535500_20536440_20536548_20536780_20536876_20536985_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20539209_20541822_20541991_20542115
101494	chr4	+	2191	8	Genic_Genomic	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-244097	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	42.3411798395378	3	25	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	2324	False	NA	NA	False	NA	NA	NA	146289382	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146289519_146291416_146291489_146388486_146388614_146390758_146390897_146391562_146392203_146392444_146392628_146392797_146393429_146552609
101495	chr19	+	4984	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	-46	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1285.19181447751	2	142	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCAAAATGTCTCGTGGTG	1423	False	NA	NA	False	NA	NA	NA	44282468	44295295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283346_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44293460_44293562
101496	chr13	-	2575	14	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3037.84800232123	3	54	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGTGTGCCCAATTTGAA	4782	False	NA	NA	False	NA	NA	NA	58550299	58539047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541103_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
101497	chr13	+	852	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	98	-12	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	3	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGTAACCGCCCTGGA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
101498	chr3	+	3485	27	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-822	31027	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	98	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACCCCGGGCCGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	89907599	89959779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89907986_89909717_89909786_89910554_89910623_89915565_89915661_89916427_89916634_89917738_89917823_89919999_89920047_89922436_89922523_89922604_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935682_89941368_89941485_89941961_89942006_89945674_89945776_89946127_89946324_89951006_89951118_89952160_89952238_89955075_89955207_89959761
101499	chr13	+	929	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	21	-12	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	113	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAACAAAAAAAAAAA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
101500	chr4	+	2925	7	Intergenic	novelGene_2084	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_6	159.261577287179	2	72	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGACTTGGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146370063	146806005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146428065_146428160_146435241_146435318_146797295_146797381_146800390_146800518_146802050_146803163_146804673
101501	SIRV5	-	4141	18	Genic_Genomic	SIRV5B	novel	229	1	NA	NA	-11200	1070	multi-exon	FALSE	non_canonical	0	0	junction_1	0	269	13	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACGTAAAACACTCATGGC	NA	False	NA	NA	False	NA	NA	NA	13606	1107	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_SIRV5_-_1149_1986_2034_2119_2157_2270_2316_3298_3403_3481_3643_5379_5448_5538_5626_6110_6169_6326_6452_6825_6957_7143_7305_7678_7762_7869_8020_8277_8381_8453_8590_10863_10990_11128
101502	chr4	+	2898	6	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	73.2731874562585	2	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390084	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147390233_147393062_147393194_147409230_147409335_147413438_147413566_147415724_147417225_147417303
101503	chr15	-	2450	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	34	junction_1	0.5	3	69	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9802	False	NA	NA	False	NA	NA	NA	22705088	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700670_22701521_22702901_22704868
101504	chrX	-	1786	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	74	-1	-2	1	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	1	89	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAATGTGTGGTGT	NA	False	NA	NA	False	NA	NA	NA	135642027	135633700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
101505	chr5	+	1254	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-71	-181	-71	181	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96009501	96010755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
101507	chr18	+	2034	12	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26653	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	562.445369247921	1	95	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAACCTCTACAAACTTAA	6432	False	NA	-90	True	NA	NA	NA	77126250	77234615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_77126380_77126423_77126678_77184944_77185420_77193500_77193586_77214567_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223631_77232714_77232839_77234398
101509	chr8	+	1570	5	ISM	ENSMUSG00000000303.13	ENSMUST00000167688.2	3203	17	60367	116	59603	-116	intron_retention	FALSE	canonical	3	1013	junction_1	64.1497272012906	1	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGGTACACACCTGATT	NA	False	NA	NA	False	NA	NA	NA	107390377	107395878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
101510	chr5	-	1835	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	72	13	-10	-13	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	2	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACACAAACAGCTTGTG	8961	False	NA	NA	False	NA	NA	NA	142892437	142888882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
101511	chr3	-	2040	14	NIC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	-812	-182	combination_of_known_junctions	FALSE	canonical	3	197	junction_1	283.393489379141	1	49	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACACACACACACACACAC	NA	False	NA	NA	False	NA	NA	NA	89926616	89907781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_89908299_89909124_89909176_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458
101512	chr2	-	3725	7	NNC	ENSMUSG00000078880.11	novel	1628	5	NA	NA	-4	2788	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	94.3423140601407	6	64	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	176328115	176311846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_176313156_176313762_176314057_176314144_176315941_176317097_176317159_176317363_176317491_176324514_176324570_176328032
101513	chr5	-	4707	1	Intergenic	novelGene_719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	69	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTCCCGATACCAAGT	NA	False	NA	NA	False	NA	NA	NA	58483143	58478436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_58478400_58483100
101514	chr4	+	2192	7	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242729	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	2	38	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147395004	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147534439_147534577_147578832_147578927_147639766_147639852_147665698_147665822_147667288_147667445_147668191
101515	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	431	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	NA	NA	NA	8315	11866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
101516	chrX	-	4119	3	Intergenic	novelGene_3894	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	24	44	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGAACAGCTTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	24122056	24022826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_24024922_24025321_24025422_24120132
101517	chrM	+	1188	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	428	-71	428	71	mono-exon	FALSE	NA	NA	NA	NA	NA	5	76	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	29	False	NA	66	True	NA	NA	NA	5755	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5800_6900
101518	chr4	+	2311	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	14	-1902	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0169885798519	2	77	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146206914	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207170_146207223_146207708_146207846_146291416_146291453_146388486_146388614_146390758_146390897_146391646_146392407_146392742_146393441_146552621
101519	chr11	-	1635	4	ISM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	14706	2	14706	0	3prime_fragment	FALSE	canonical	3	2258	junction_1	47.7935374524864	1	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	59104282	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165
101520	chr16	+	1849	11	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	609.220165457448	2	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929056_22929336_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
101521	chr4	-	3455	8	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	98.1543973252636	1	80	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9495	False	NA	NA	False	NA	NA	NA	147894273	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147868857_147868955_147869148_147869313_147889671_147889780_147891546_147891641_147893775
101522	chr15	-	1265	1	FSM	ENSMUSG00000082585.4	ENSMUST00000120421.2	648	1	-103	-514	-103	514	mono-exon	FALSE	NA	NA	NA	NA	NA	2	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	73966285	73965020	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_73965000_73966300
101523	chr15	-	2938	17	Antisense	novelGene_ENSMUSG00000022364.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	83	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGCTACCCAGCAGTCCC	NA	False	NA	NA	False	NA	NA	NA	57822158	57775648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_57775786_57779363_57779510_57786350_57786525_57789177_57789351_57795926_57796078_57799484_57799643_57801293_57801499_57804019_57804194_57805763_57805851_57805929_57806074_57812342_57812472_57814367_57814502_57815026_57815207_57816149_57816379_57816881_57817035_57818666_57818809_57821736
101524	chr4	-	5235	2	NNC	ENSMUSG00000055296.15	novel	15981	18	NA	NA	44559	6423	at_least_one_novel_splicesite	TRUE	non_canonical	3	40	junction_1	0	35	76	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGTAATGCAAAGTTCTT	NA	False	NA	NA	False	NA	NA	NA	56878899	56873452	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_56875664_56875875
101525	chr7	-	297	4	NNC	ENSMUSG00000061787.16	novel	673	4	NA	NA	0	-328	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5477.15877277829	1	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGCTCCTGGTGAGTGTTG	NA	False	NA	NA	False	NA	NA	NA	80994980	80993492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_80993501_80994058_80994165_80994604_80994757_80994949
101526	chr18	+	3525	10	Antisense	novelGene_ENSMUSG00000003778.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	33	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34734225	34742103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_34735303_34735726_34735832_34736761_34736937_34737649_34737722_34737885_34737977_34738526_34738741_34738979_34739039_34739726_34740547_34740829_34741109_34741470
101527	chr7	+	490	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	97	522	-14	-63	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	10	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGATAAGCCCATCTCAAGGA	NA	False	NA	NA	False	NA	NA	NA	28050173	28052058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
101528	chr3	-	1034	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	-78	-71	-78	71	mono-exon	FALSE	NA	NA	NA	NA	NA	14	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAATG	NA	False	NA	NA	False	NA	NA	NA	149779257	149778223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_149778200_149779300
101530	chr3	+	2706	1	FSM	ENSMUSG00000027673.13	ENSMUST00000195565.2	3127	1	-7	428	-2	-428	mono-exon	FALSE	NA	NA	NA	NA	NA	4	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGATAAGTGATGAAAGAC	NA	False	NA	NA	False	NA	NA	NA	32791217	32793923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32791200_32793900
101532	chr4	+	3956	7	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-39	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	188.257801963159	643	61	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145397215	145431010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145427474_145429340_145429507
101533	chr12	-	1370	9	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2588.10031683472	580	17	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637353_111637414_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
101534	chr16	+	3044	8	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_6	838.454141225849	1	35	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22929094_22929329_22929474_22929875_22929992_22930293_22930343_22930566
101535	chr1	-	3033	5	ISM	ENSMUSG00000026219.15	ENSMUST00000187733.2	865	7	1369	-272	1369	-41	3prime_fragment	FALSE	canonical	3	1142	junction_1	138.980214419175	5	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGGCTGTGTGTATCC	NA	False	NA	NA	False	NA	NA	NA	84708055	84702025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845
101536	chr9	+	5110	28	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	15	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	913.887059925372	1	152	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAAACACAAAATTGCA	NA	False	NA	NA	False	NA	NA	NA	72569734	72656867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72617719_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628782_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
101537	chr4	+	2939	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	12	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	42.3411798395378	5	62	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206912	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146368115_146368152_146388486_146388614_146390758_146390905_146391316_146392628_146392795_146393458_146552638
101538	chr14	+	1213	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-182	-695	-182	695	mono-exon	FALSE	NA	NA	NA	NA	NA	4	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGATATTTTAC	NA	False	NA	NA	False	NA	NA	NA	13669255	13670468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
101539	chr4	+	2873	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	-9	multi-exon	TRUE	non_canonical	0	0	junction_1	39.9805508271765	1	63	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147216501	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578927_147639766_147639865_147651463_147651652_147661528_147661587_147665698_147665826_147667290_147667431_147667838_147668838_147668930
101540	chr15	-	2827	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	212	-917	-106	-17	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	1	107	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTGATGATGGGAGGC	652	False	NA	NA	False	NA	NA	NA	36793869	36771030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
101541	chr17	+	1427	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	3	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1798.31963232346	1	79	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAATTTTGTTTTC	3039	False	NA	NA	False	NA	NA	NA	35816917	35821667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817325_35819873_35820121_35820304_35820436_35820877_35821037_35821184
101542	chr4	-	3026	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	2	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	506.926664911815	1	47	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCTCTTTTTTAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	135080443	135048422	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135056778_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135072645_135072789_135073626_135073757_135074045_135074169_135074425_135074516_135080407
101544	chrM	+	1656	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-290	12	-290	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGACAATATGTGAATAT	-1	True	NA	NA	False	NA	NA	NA	9876	11532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
101546	chr2	-	5666	2	Intergenic	novelGene_2729	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	124	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCCCTGTGCTCTCACCA	NA	False	NA	NA	False	NA	NA	NA	150288835	150266276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_150270037_150286929
101547	chr9	+	1860	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	346	-9	36	9	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	2	104	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGTGTTGCTTTC	NA	False	NA	NA	False	NA	NA	NA	108183673	108215142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
101548	chr12	-	5480	13	Antisense	novelGene_ENSMUSG00002074888.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	122	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTGGGTGTTTGCGTCA	NA	False	NA	NA	False	NA	NA	NA	109628019	109602447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_109604361_109608998_109609087_109609847_109609896_109611695_109611764_109612278_109613184_109615589_109615677_109616505_109617534_109618292_109618371_109620717_109620879_109623164_109623275_109624486_109624556_109626156_109626242_109627179
101549	chr10	-	3515	8	Intergenic	novelGene_3394	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	102	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCCCCGAGCGTTCTCCCG	NA	False	NA	NA	False	NA	NA	NA	13006355	12966615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_12966767_12981596_12981638_12988262_12988295_12989901_12989963_12992451_12992530_13000603_13000905_13002875_13004741_13005369
101551	chr3	-	1916	1	NIC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	17871	-924	mono-exon	FALSE	NA	NA	NA	NA	NA	4	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGCTCTTCAAAGACGA	NA	False	NA	NA	False	NA	NA	NA	30736046	30734130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_30734100_30736000
101552	chr1	+	2586	15	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	80	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTATGTAGAACTCCTCA	NA	False	NA	NA	False	NA	NA	NA	20873229	20887562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873872_20875037_20875132_20875486_20875563_20876019_20876125_20876964_20877107_20878944_20879096_20879818_20879947_20880278_20880457_20882188_20882397_20882786_20882923_20883186_20883340_20884621_20884731_20884911_20885142_20886865_20887003_20887465
101553	chr7	+	3375	24	NNC	ENSMUSG00000005609.17	novel	4300	25	NA	NA	1	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	50.9815193173886	1	84	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCACTTAATAAACCCTTT	544	False	NA	NA	False	NA	NA	NA	110628202	110655554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_110628389_110629420_110629514_110632894_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652664_110655277
101554	chr7	-	6302	7	Intergenic	novelGene_3008	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	26	69	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGGCTTGTGCCCCTACT	3772	False	NA	NA	False	NA	NA	NA	102477920	102269517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_102270400_102272376_102274901_102277929_102278512_102278604_102278694_102446836_102448744_102450251_102450403_102477753
101555	chr8	+	4148	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	-101	-800	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	2	125	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAATATGTACGTGTGG	NA	False	NA	NA	False	NA	NA	NA	20697883	20726466	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
101556	chr4	+	5025	2	Intergenic	novelGene_1884	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	137	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820706	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66820803_66820906
101557	chr15	+	1450	2	Intergenic	novelGene_3266	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	1235	junction_1	0	1	38	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCACCAACGAGAAAACGGT	NA	False	NA	NA	False	NA	NA	NA	22703442	22704986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22704559_22704652
101558	chr13	+	801	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-17	-34	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	25	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGCAAAAAAAACAAAAAA	7945	False	NA	NA	False	NA	NA	NA	74554510	74555431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74554843_74554962
101559	chrX	+	2015	16	ISM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	9195	650	-5984	324	3prime_fragment	FALSE	canonical	3	2853	junction_2	315.853594776652	7	42	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCCCAGTCCTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	20538331	20548768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
101560	chr4	+	2762	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	552	6	NA	NA	20	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	40.4532957347417	5	74	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	147216514	147669649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216747_147395068_147395147_147534439_147534577_147536170_147536264_147637751_147637884_147639766_147639926_147661481_147661587_147665698_147665826_147667290_147667431_147668090
101561	chr9	-	4726	25	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.59947894041409	1	101	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGAAGGAGAGAGGAAGAG	6406	False	NA	NA	False	NA	NA	NA	72656909	72569783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569895_72577232_72577296_72584594_72584673_72584772_72584842_72616391_72616444_72617758_72617823_72619446_72619549_72625498_72625667_72628582_72628699_72628776_72628944_72638183_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648964_72649935_72650036_72650818_72650914_72653683_72653759_72654403
101562	chr5	-	2358	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	0	260	0	multi-exon	FALSE	canonical	3	916	junction_1	0	382	18	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTTGTTGGTTGGTTC	NA	False	NA	NA	False	NA	NA	NA	125466818	125463028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
101563	chr13	-	2478	20	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	10	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	393.122495411916	2	97	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTACTTGGTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	6698803	6631209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655082_6669229_6669320_6669555_6669594_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
101564	chr2	+	1044	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11379	19	multi-exon	FALSE	canonical	0	0	junction_1	0	2	33	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACTGGACCACCCACCC	NA	False	NA	NA	False	NA	NA	NA	11413655	11426050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414319_11425669
101565	chr16	-	1443	1	Intergenic	novelGene_3860	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACTGCTTGGGTAACCAA	NA	False	NA	NA	False	NA	NA	NA	93266870	93265427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_93265400_93266900
101566	chr4	-	5560	3	Antisense	novelGene_ENSMUSG00000081876.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	100	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTGGTAAGAATGACACAT	NA	False	NA	NA	False	NA	NA	NA	91077435	90952196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_90952388_90952878_90954878_91074065
101567	chr17	-	473	3	NNC	ENSMUSG00000023944.15	novel	764	3	NA	NA	96	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5105	4	23	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATACAGTCCTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	45882412	45878708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878908_45881903_45882104_45882338
101569	chr5	+	869	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	25	5	-19	-5	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	34	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTACACACACTGTACCGT	4513	False	NA	NA	False	NA	NA	NA	122529965	122544237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
101571	chr4	+	2448	1	Intergenic	novelGene_2119	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTAATAAAACTGGCAGC	NA	False	NA	NA	False	NA	NA	NA	146803260	146805708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146803300_146805700
101573	chr4	+	3038	8	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	82	-11	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	24.3276948084663	1	73	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAGTTTCAACAAGTTTG	NA	False	NA	NA	False	NA	NA	NA	145311854	145351900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145312066_145314001_145314095_145315865_145315978_145343687_145343746_145347127_145347255_145348721_145348867_145349274_145350262_145350595
101576	chr1	-	1571	2	ISM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	3184	196	2604	-196	3prime_fragment	FALSE	canonical	3	1138	junction_1	0	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCCTTAGTGGAATTTC	NA	False	NA	NA	False	NA	NA	NA	182107185	182103532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_182104459_182106540
101577	chr11	+	1821	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	197	4	-78	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	2	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5328	False	NA	NA	False	NA	NA	NA	52251883	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
101578	chr3	+	2629	9	NIC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	11	279	combination_of_known_junctions	FALSE	canonical	1	2	junction_6	267.935043434038	2	63	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCACAAACTCTTGAATACTC	NA	False	NA	NA	False	NA	NA	NA	41510205	41568772	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41558904_41559427_41564237_41564356_41567557
101579	chr11	-	1158	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	1	-2	0	2	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	451	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	NA	False	NA	NA	NA	33113076	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
101580	chr11	+	1683	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-57	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1106.70134154387	22	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5349	False	NA	NA	False	NA	NA	NA	52251904	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276450_52278248_52278301_52279258
101581	chr17	-	3088	16	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	70	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAATCCATAACAGACC	NA	False	NA	NA	False	NA	NA	NA	56630483	56616332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56616578_56617673_56617837_56619054_56619279_56619870_56619966_56620062_56620158_56620227_56620251_56622190_56622306_56622391_56622505_56622774_56622881_56624002_56624113_56624991_56625149_56625244_56625382_56627158_56627281_56627394_56627542_56629019_56629124_56629351
101582	chr17	+	1987	9	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	434	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	975.037403128721	1	35	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	6597	False	NA	NA	False	NA	NA	NA	56620096	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56620249_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625265_56629043_56629126_56629355
101584	chr19	+	4064	3	Intergenic	novelGene_1257	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	66	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGACCATATAATCAGTC	3192	False	NA	NA	False	NA	NA	NA	40116862	40199942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_40118409_40137024_40139124_40199523
101585	chr9	+	5367	29	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-9	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	752.096332165729	1	135	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGGCTCCGTTACCTAA	NA	False	NA	NA	False	NA	NA	NA	72569754	72657133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638563_72638667_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
101586	chr6	-	3493	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	227	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	1236.70407131213	2	118	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAACTCTGGATTTGAA	8712	False	NA	NA	False	NA	NA	NA	145021683	144944885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961406_144963839_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
101587	chr9	+	1660	8	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACGTCCAAGGCGACTGCC	NA	False	NA	NA	False	NA	NA	NA	78385811	78388952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386138_78386233_78386471_78386555_78386819_78386908_78387057_78387133_78387433_78387524_78387710_78387797_78387971_78388923
101588	chr4	+	2632	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	7	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	35.6791255498225	1	35	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578926_147637751_147637884_147639766_147639810_147665698_147665826_147667290_147667436_147667927_147668493_147668576
101589	chr9	+	1210	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1571	147	1553	-147	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082227	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
101591	chr4	+	2739	5	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	37	718	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	140.371605034637	1	71	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147056495	147075930	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147056575_147058404_147058498_147067150_147067255_147073383_147074256_147074339
101592	chr7	+	1485	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3988.13751733097	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACCTTGAACAGTGA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495293_46496988_46497170_46498396_46498515_46499601_46499735_46500302_46500483_46501300_46501408_46503406_46503520_46504404
101593	chr11	+	4474	27	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-21	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	58.7830229486563	1	86	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771157	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
101594	chr10	+	1661	9	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3357.08502415042	3	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGCTCGCAACTCTGT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013342_81013701_81013879_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015501_81017859_81017945_81018004
101596	chr4	+	2779	6	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-11	40408	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	166.894457667114	22	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTAATTCAAATGAGCCA	NA	False	NA	NA	False	NA	NA	NA	146206930	146255412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207052_146209452_146209546_146214878_146215005_146250678_146250737_146251579_146251707_146253158
101598	chr18	-	6287	34	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	6	6313	intron_retention	FALSE	non_canonical	0	0	junction_1	548.414257972117	1	84	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGCACCGCGAACGGATT	NA	False	NA	NA	False	NA	NA	NA	34784765	34757690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
101599	chrM	+	1495	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	781	-452	781	452	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAGACAACCAACCAAAAA	63	False	NA	15	True	NA	NA	NA	12522	14017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_12500_14000
101600	chr17	+	195	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	1552	102	1552	-102	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCCCTGGTGGAGCGCTG	NA	False	NA	NA	False	NA	NA	NA	40158795	40158990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40158800_40159000
101601	chr4	-	2537	7	Antisense	novelGene_ENSMUSG00000078496.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	38	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAAACCGCGGAATTTT	NA	False	NA	NA	False	NA	NA	NA	147599507	147533638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147533954_147536168_147536262_147592040_147592096_147595207_147595336_147596800_147597199_147597870_147599041_147599129
101603	chr5	+	2133	6	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	99	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACTCGACAGTGGCTGCGC	NA	False	NA	NA	False	NA	NA	NA	142888893	142892468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889280_142889455_142889697_142889821_142890001_142890095_142891234_142891320_142891448_142892406
101605	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
101606	chr11	-	1759	3	FSM	ENSMUSG00000016559.15	ENSMUST00000139623.2	874	3	17	-902	7	-330	multi-exon	FALSE	canonical	3	12160	junction_2	887	3	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGTGTCAAACCTAAATT	NA	False	NA	NA	False	NA	NA	NA	115915323	115913116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914846_115915204
101607	chr11	-	1267	2	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAGCAGCTGCATGATGAG	NA	False	NA	NA	False	NA	NA	NA	75656671	75650213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75650253_75655443
101608	chr8	-	3288	22	NNC	ENSMUSG00000038225.16	novel	3797	15	NA	NA	90	14249	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	69.8701419398435	1	53	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGGAGGGACAGAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	47070127	47014379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_47014659_47014810_47014872_47015450_47015680_47021643_47021718_47023006_47023113_47025784_47025865_47026466_47026514_47026881_47026945_47029259_47029416_47031287_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043275_47043339_47045623_47045791_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070046
101609	chr7	+	974	2	Genic_Genomic	ENSMUSG00000078636.5	novel	1232	1	NA	NA	-20	11	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396374	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_51397210_51397498
101610	chr17	+	925	3	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2629	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCACTTGCTCTTTGCTCT	NA	False	NA	NA	False	NA	NA	NA	45878705	45880029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879491_45879785
101611	chr11	+	243	1	Intergenic	novelGene_2516	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCGGATGCCTGCATGAG	NA	False	NA	NA	False	NA	NA	NA	108902705	108902948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902700_108902900
101612	chr12	+	5227	2	Intergenic	novelGene_4370	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	167	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	68605001	68610270	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68609862_68609903
101613	chr11	-	1771	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	30	-1	30	-1	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	2	32	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGGCTTGTGTGTCAGTG	1877	False	NA	NA	False	NA	NA	NA	59119066	59102238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
101614	chr9	+	3455	26	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	18	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	787.024344223227	1	104	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAGAGTAGTTCAATGCA	NA	False	NA	NA	False	NA	NA	NA	72569737	72655443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569900_72577235_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647531_72653688_72653762_72654407
101615	chr6	+	2098	17	Antisense	novelGene_ENSMUSG00000080465.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.242061459137964	4	33	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGCGGAGCACGTCGGGA	NA	False	NA	NA	False	NA	NA	NA	71857621	71885733	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_71858218_71858492_71858651_71859173_71859216_71860430_71860559_71861506_71861598_71862279_71862387_71862483_71862563_71865541_71865615_71872884_71872977_71874096_71874152_71875322_71875442_71878181_71878304_71879839_71879945_71880409_71880481_71882084_71882128_71884729_71884831_71885617
101616	chrX	-	1348	3	NNC	ENSMUSG00000031422.17	novel	1996	4	NA	NA	599	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1661.5	1	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAAAAAAAAAAATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	135640633	135633703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634895_135636294_135636372_135640553
101617	chr13	+	3188	3	ISM	ENSMUSG00000062382.10_ENSMUSG00000076033.3	ENSMUST00000221435.2	491	4	-23	-2348	-23	1697	intron_retention	FALSE	canonical	3	85	junction_2	7	123	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTATTTTCAAAGAGGCAA	1224	False	NA	NA	False	NA	NA	NA	74547789	74557162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_74547912_74553897_74554023_74554221
101618	chr12	-	2016	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7551	junction_5	330.812971665596	120	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
101619	chr9	-	2404	17	NIC	ENSMUSG00000032116.19	novel	5867	18	NA	NA	4	-256	combination_of_known_splicesites	FALSE	canonical	0	0	junction_15	443.621737625367	3	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGCCTTATTTGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	36678911	36643977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36676349_36676477_36678845
101620	chr3	-	4937	1	Intergenic	novelGene_3174	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	165	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTAGGGGAATGCCAGGA	NA	False	NA	NA	False	NA	NA	NA	106602093	106597156	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_106597200_106602100
101621	chr3	+	2833	4	ISM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	10812	1210	10812	-1210	3prime_fragment	FALSE	canonical	3	470	junction_1	22.4499443206436	8	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACAGTTCTTCCGCAT	NA	False	NA	NA	False	NA	NA	NA	104556795	104564568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_104556834_104558201_104558346_104560057_104560904_104562763
101622	chr2	+	2816	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	-267	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	436.656202164688	1	82	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAGCTATTGCTGCTTC	653	False	NA	NA	False	NA	NA	NA	26279359	26286867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280108_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
101623	chr2	-	4372	1	Intergenic	novelGene_2677	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	99	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTGCCGATGCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	104754845	104750473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_104750500_104754800
101624	chr16	+	3659	17	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-35863	-102	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGGGGACTCGACCCACA	NA	False	NA	NA	False	NA	NA	NA	16131203	16176773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16131901_16132123_16132290_16134199_16134308_16134465_16134641_16136306_16137373_16139449_16139538_16141190_16141290_16141489_16141641_16141837_16141953_16147668_16147869_16149859_16149997_16154716_16154880_16156458_16156542_16158861_16158932_16159285_16159332_16163860_16164010_16176627
101625	chr10	-	6496	13	NIC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	68	262	combination_of_known_junctions	FALSE	canonical	3	63	junction_12	54.9749311555327	1	158	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGGTGAATACTTAA	3059	False	NA	NA	False	NA	NA	NA	62723035	62648138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930_62715913_62722950
101626	chr1	+	573	4	NNC	ENSMUSG00000026687.15	novel	511	4	NA	NA	7	-427	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	292.30615609133	7	11	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTTAGTATTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	167177811	167195674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182032_167195457
101628	chr17	-	6477	10	NNC	ENSMUSG00000096780.8	novel	1859	9	NA	NA	3031	8350	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	409.086516250264	7	116	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGCAGGCGCGGTCAGGCC	NA	False	NA	NA	False	NA	NA	NA	6713463	6697572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_6697636_6699276_6699319_6702404_6702530_6702867_6702945_6703293_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169
101629	chr11	-	2907	1	Genic_Genomic	ENSMUSG00000016559.15	novel	NA	NA	NA	NA	368	713	mono-exon	FALSE	NA	NA	NA	NA	NA	4	80	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCGCAGCACTTTCAGTA	NA	False	NA	NA	False	NA	NA	NA	115914931	115912024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_115912000_115914900
101630	chr11	-	5286	2	Intergenic	novelGene_2294	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	57450923	57433746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57434170_57446060
101631	chr6	-	688	4	Genic_Genomic	ENSMUSG00000107608.2	novel	1192	1	NA	NA	-6410	8724	multi-exon	FALSE	non_canonical	0	0	junction_1	13.6707311029399	4	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCGCTCGGGCCGGGCG	6664	False	NA	NA	False	NA	NA	NA	117901093	117884767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_117884839_117894428_117894557_117896057_117896126_117900672
101633	chr8	+	4643	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-85	-249	multi-exon	FALSE	canonical	3	906	junction_2	214.058403245469	1	130	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTTGAGAAATTTGCTGG	NA	False	NA	NA	False	NA	NA	NA	19834676	20045639	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
101634	chr5	-	3447	12	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	93	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTCCGCTACGCCCGCCC	NA	False	NA	NA	False	NA	NA	NA	33829537	33815928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816069_33818562_33818732_33818861_33818990_33821164_33821256_33821494_33822198_33824034_33824517_33825311_33825396_33825475_33825587_33826010_33826082_33826160_33826992_33828745_33828853_33829007
101635	chr11	+	2083	1	Antisense	novelGene_ENSMUSG00000098955.3_AS_novelGene_ENSMUSG00002076664.1_AS_novelGene_ENSMUSG00000062825.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCGAGAGAAAAGGCCGCGG	111	False	NA	NA	False	NA	NA	NA	120236619	120238702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120236600_120238700
101636	chr12	+	2089	9	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	261.258462781591	2	41	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTATGACTAAAAAAAGTGTG	2865	False	NA	NA	False	NA	NA	NA	109612563	109628135	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618356_109623233_109623266_109624486_109624556_109626156_109626242_109627179
101637	chr4	+	3212	9	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	3	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	237.500394736514	4	33	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	2286	False	NA	NA	False	NA	NA	NA	147106309	147145245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147106458_147107818_147107913_147115003_147115080_147136965_147137048_147140055_147140183_147141715_147142358_147142445_147142694_147143198_147143596_147143847
101638	chr10	+	1709	6	Antisense	novelGene_ENSMUSG00000019773.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	56	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAAAAGGCGCCAGCTGG	NA	False	NA	NA	False	NA	NA	NA	5749165	5755423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_5749821_5750251_5750294_5750340_5750439_5751157_5751243_5751868_5752531_5755256
101639	chr5	+	202	1	Intergenic	novelGene_901	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	55	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACGAGACCGATAGTCAACAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146197990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198000
101640	chr4	+	2115	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	15	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	14	36	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216509	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147536170_147536264_147545579_147545672_147665698_147665826_147667290_147667445_147668275
101641	chr2	+	3410	2	ISM	ENSMUSG00000080888.4	ENSMUST00000121827.2	2055	3	336	-1481	336	1481	3prime_fragment	FALSE	canonical	3	9	junction_1	0	2	100	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGCCTTGGTCATGGTA	NA	False	NA	NA	False	NA	NA	NA	174928629	174933192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_174928693_174929845
101642	chr16	-	4345	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-13	0	intron_retention	FALSE	canonical	3	632	junction_4	191.240629561455	86	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTGCCAGTAAGTGAATT	NA	False	NA	NA	False	NA	NA	NA	16176836	16130109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
101645	chrM	-	1354	1	Antisense	novelGene_ENSMUSG00000064363.1_AS_novelGene_ENSMUSG00000065947.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTACGTGTTTGAAACTT	-10	True	NA	NA	False	NA	NA	NA	11488	10134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10100_11500
101647	chr4	+	3591	1	Intergenic	novelGene_1895	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	34	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGATTCTCTCTTCCATC	NA	False	NA	NA	False	NA	NA	NA	81822257	81825848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_81822300_81825800
101648	chr4	+	2277	6	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	1	330366	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	50.4245971724118	2	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	146033868	146393557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146384326_146384431_146388486_146388614_146390758_146391413_146391749_146392589_146393152
101650	chrX	+	1949	1	Intergenic	novelGene_4037	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	78	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTTTTTATTAGAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	116229778	116231727	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_116229800_116231700
101651	chr16	-	519	1	Intergenic	novelGene_3812	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCACTTTTGGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101652	chr4	+	2443	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	454	2	NA	NA	-91	-36	multi-exon	FALSE	non_canonical	0	0	junction_2	36.8811906291299	1	36	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAACTAACTCCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	147209621	147669619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147449058_147449174_147578832_147578918_147665760_147665826_147667290_147667431_147667838
101653	chr4	+	3380	6	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	-51	2155	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	208.871252210542	5	73	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2318	False	NA	NA	False	NA	NA	NA	147445708	147477616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147445910_147447267_147447362_147469676_147469759_147472778_147472906_147474656_147475548_147475631
101654	chr15	-	3296	1	Intergenic	novelGene_3251	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	86	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGCTGCCATAATCTGCTT	9797	False	NA	NA	False	NA	NA	NA	22705093	22701797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22701800_22705100
101655	chr5	-	1528	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-72	94	multi-exon	FALSE	non_canonical	0	0	junction_1	0	35	27	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833627	5831520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5831572_5832150
101656	chr7	-	1498	9	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-13	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	8638.1817015721	3	19	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396762_126397145_126397299_126398216
101657	chr4	+	4250	8	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	2798	4	NA	NA	1	-1	multi-exon	TRUE	non_canonical	0	0	junction_3	11.26852216738	1	115	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146033868	146135324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034017_146043550_146043631_146054375_146054477_146058453_146058577_146060726_146062479_146132101_146132721_146132889_146132899_146133906
101658	chr7	-	2736	1	Intergenic	novelGene_2926	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	114	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGACAAAGATGCTTCTCAT	7882	False	NA	NA	False	NA	NA	NA	34226680	34223944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_34223900_34226700
101659	chr16	-	500	1	Intergenic	novelGene_3818	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	50	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101660	chr5	+	4760	14	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4936	-97	intron_retention	FALSE	canonical	3	616	junction_3	370.853932233776	5	74	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTTAGAGTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	108208603	108256038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
101661	chrM	-	646	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTCAAATTCATTCGACTA	900	False	NA	60	True	NA	NA	NA	15288	14642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14600_15300
101663	chrM	+	951	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	415	12	415	-12	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGACAATATGTGAATAT	484	False	NA	NA	False	NA	NA	NA	10581	11532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10600_11500
101664	chr3	+	1440	2	Genic_Genomic	ENSMUSG00000069014.5	novel	1488	1	NA	NA	-12	-10	multi-exon	FALSE	canonical	0	0	junction_1	0	1	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACTTTTCAAAAAAAAAAAA	5428	False	NA	NA	False	NA	NA	NA	54388846	54390336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_54388939_54388988
101665	chr10	+	4181	10	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	11	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGCGCTTCTTCATCCTT	NA	False	NA	NA	False	NA	NA	NA	62647540	62675363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955
101666	chr6	+	1533	1	Intergenic	novelGene_4247	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCAAATTCAAAAGTTCCC	NA	False	NA	NA	False	NA	NA	NA	124991159	124992692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_124991200_124992700
101667	chr14	+	2033	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-1	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	757.345324689076	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAAAAATTAATCCTCA	NA	False	NA	NA	False	NA	NA	NA	30271166	30295567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292293_30292919_30293001_30293108_30293203_30294164_30294288_30295293
101670	chr17	+	2053	1	Intergenic	novelGene_187	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGAGCTGTGGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	40153887	40155940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
101671	chrX	-	3242	25	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.999131567356817	6	42	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGCTCGGAAGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	20548775	20524659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20524764_20534686_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545032_20545832_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
101672	chr4	+	3182	4	Intergenic	novelGene_2074	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	40	junction_1	34.5864456430872	2	22	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146370014	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146384326_146384431_146388486_146388614_146390758
101673	chr15	+	3148	12	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	55	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	256.970847624639	1	82	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGGTTAATGTTGCAG	NA	False	NA	-39	True	NA	NA	NA	101982353	102005603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992630_101997123_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
101674	chr18	-	1920	1	Intergenic	novelGene_4500	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTTATTCAAGAGCGCT	NA	False	NA	NA	False	NA	NA	NA	9594750	9592830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_9592800_9594800
101675	chr10	+	3054	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	2966.02270297383	4	89	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015185_81015286_81015377_81015631_81015715_81015912_81015986_81016240_81016398_81016507_81016637_81016976_81017051_81017245_81017326_81017460_81017722
101676	chr4	+	3117	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-6	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	10.9137241581414	1	41	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206894	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146291416_146291510_146293441_146293573_146368115_146368239_146384314_146384431_146390758_146390904_146391317_146392124_146392292_146393416_146552596
101677	chr11	+	1627	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	10	-272	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4245.84773160791	2	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATATATCATGCCTCCA	3093	False	NA	NA	False	NA	NA	NA	75623796	75656399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647786_75650152_75650255_75655445
101678	chr5	+	4027	28	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCCGCCTGCGGGCCGGC	NA	False	NA	NA	False	NA	NA	NA	100509553	100564087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100510090_100511235_100511314_100511697_100511816_100513598_100513696_100513801_100513854_100516152_100516210_100521236_100521575_100523066_100523190_100526685_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533987_100534063_100536389_100536470_100536925_100536966_100538617_100538687_100540247_100540490_100540728_100540875_100541061_100541221_100543657_100543760_100547204_100547349_100550073_100550215_100551873_100551968_100553300_100553498_100555011_100555136_100555887_100555973_100563961
101679	chr5	+	1439	3	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGAGAAAAATAAATAATGT	NA	False	NA	NA	False	NA	NA	NA	142888881	142890540	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095
101681	chr17	-	2355	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	94	25	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884192	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879178_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
101682	chr15	-	2094	8	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-6	intron_retention	FALSE	canonical	3	16287	junction_7	5328.95118141249	21	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	3572	False	NA	NA	False	NA	NA	NA	79967553	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
101683	chr7	+	3331	8	Antisense	novelGene_ENSMUSG00000030751.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	83	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCGGTGATCGTCAAAGA	NA	False	NA	NA	False	NA	NA	NA	113863719	113875297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_113866438_113868955_113869085_113869566_113869638_113870283_113870378_113873046_113873148_113873257_113873362_113873649_113873702_113875235
101684	chr17	-	1074	2	Intergenic	novelGene_89	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	7	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGTTGATACATTTAT	NA	False	NA	NA	False	NA	NA	NA	23097164	23095198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_23095458_23096349
101685	chr6	-	2380	12	Antisense	novelGene_ENSMUSG00000029833.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAGAAGGAAGCAGAGAGAAA	NA	False	NA	NA	False	NA	NA	NA	37943111	37920346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_37920465_37922454_37922621_37926154_37926331_37928381_37928561_37930428_37930562_37933334_37933409_37933936_37934108_37934443_37934771_37935494_37935629_37937714_37937791_37941637_37941786_37942433
101686	chr3	+	2761	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	52	118	2	-10	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	1	133	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATGTTCTGTGAGCGTC	3339	False	NA	NA	False	NA	NA	NA	96604450	96613268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
101687	chr11	+	1920	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	-105	285	-105	-285	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	82	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATTAAAAATGCCAAATA	2886	False	NA	NA	False	NA	NA	NA	75623589	75656386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
101688	chr13	-	2431	20	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-28	8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	382.729264298789	4	21	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTACTTGGTTTATTGT	NA	False	NA	NA	False	NA	NA	NA	6686714	6631209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6686596
101689	SIRV5	+	2038	16	NNC	SIRV5A	novel	2085	17	NA	NA	0	1	intron_retention	FALSE	canonical	0	0	junction_6	3508.86121064307	4	33	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTACCGCCAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	1008	10990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3641_5516_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
101691	chrX	-	2051	4	FSM	ENSMUSG00000031422.17	ENSMUST00000166930.8	1926	4	-115	-10	6	-1	multi-exon	FALSE	canonical	3	36	junction_3	1454.90228766975	1	47	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642019	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641694
101692	chrX	+	3918	4	Intergenic	novelGene_4049	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	106	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCTAGGAATTGATGTAT	NA	False	NA	NA	False	NA	NA	NA	122635924	122755473	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_122636932_122735749_122736184_122751256_122752091_122753830
101693	chr11	+	3606	19	NNC	ENSMUSG00000020527.15	novel	3644	23	NA	NA	14346	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	61.1569525034249	1	60	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84787757	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
101694	chr17	-	553	2	Genic_Genomic	ENSMUSG00000058542.4	novel	552	1	NA	NA	-205	-18	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	21	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTCAAGCACGACTAGGA	NA	False	NA	NA	False	NA	NA	NA	6182885	6182146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_6182459_6182644
101696	chr10	-	1317	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	3	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1798.1321033852	1	71	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGATGTCTATGAGTT	NA	False	NA	NA	False	NA	NA	NA	90959862	90952660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953082_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957779_90957906_90959426_90959569_90959777
101697	chr7	-	1446	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	16	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6715.62710679353	9	12	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTATTTAAGGGGGAGT	NA	False	NA	NA	False	NA	NA	NA	126398410	126394423	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396698_126396823_126396949_126398216
101698	chr5	-	2735	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	81	1736	54	-297	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	1	57	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGGATGGCTGGTATCTGG	NA	False	NA	NA	False	NA	NA	NA	31337407	31315084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
101700	chr6	+	1866	13	Antisense	novelGene_ENSMUSG00000080465.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.276385399196283	2	38	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGTTGGGAGAAAACAAACA	NA	False	NA	NA	False	NA	NA	NA	71857642	71875442	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_71858218_71858490_71858651_71859174_71859216_71860430_71860583_71861527_71861610_71862292_71862387_71862483_71862563_71865541_71865665_71866571_71866671_71870365_71870515_71871273_71871370_71872854_71872972_71875343
101701	chrX	+	1078	1	FSM	ENSMUSG00000081205.5	ENSMUST00000117582.2	1068	1	343	-353	343	353	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAGGAATAAAAAATTAAGGA	NA	False	NA	NA	False	NA	NA	NA	79500690	79501768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_79500700_79501800
101702	chr3	-	3942	27	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	398	548	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	381.852995351839	3	83	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTCAATTACGTGAAAGAGAA	8121	False	NA	NA	False	NA	NA	NA	89955208	89906898	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930742_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942004_89945670_89945773_89946156_89946324_89951006_89951118_89952160_89952239_89955076
101703	chr1	+	1202	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	14	0	-14	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTGTCTCAAAGCCTGG	NA	False	NA	NA	False	NA	NA	NA	86454447	86458420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
101704	chr5	+	1005	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	46	307	-24	-307	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	2	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGATTCGGTCTCTTCGA	NA	False	NA	NA	False	NA	NA	NA	115697571	115701479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
101705	chr13	+	5431	1	Intergenic	novelGene_1544	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	25	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113854947	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113854900_113860400
101706	chr11	-	2754	14	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	92	808	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	695.143423113695	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTGGAGCACTCCTT	5293	False	NA	NA	False	NA	NA	NA	88846199	88814037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88814504_88814562_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
101707	chr6	+	2168	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	-344	-6	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_1	2343.33224276883	2	28	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAATGACTGGCACAGCT	3385	False	NA	NA	False	NA	NA	NA	117883406	117902574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117883479_117894430_117894560_117896059_117896121_117900668
101708	chr17	+	1927	10	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-13	-4	intron_retention	FALSE	non_canonical	0	0	junction_6	1147.38853247034	1	48	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACCACCTGGGTTCCTG	NA	False	NA	NA	False	NA	NA	NA	13135348	13143439	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13139345_13139626_13139695_13141534_13141620_13142104_13142298_13142416_13142581_13143146
101709	chr11	-	3615	19	NNC	ENSMUSG00000087607.2	novel	480	2	NA	NA	-108	82974	intron_retention	FALSE	non_canonical	0	0	junction_1	0.458122847290851	1	115	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGCCAACACAAGACAACAT	NA	False	NA	NA	False	NA	NA	NA	46035949	45951749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_45951836_45955839_45955910_45984689_45984767_45990677_45990754_46003581_46003777_46004449_46004514_46009244_46009317_46012244_46012414_46013919_46014002_46015832_46015974_46018071_46018249_46019610_46019699_46022445_46022643_46025250_46025359_46027069_46027289_46028190_46028269_46030825_46031061_46033748_46033897_46034616
101710	chr11	+	7534	45	Intergenic	novelGene_2378	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	125	16	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATGTTCATCATTTCA	NA	False	NA	NA	False	NA	NA	NA	62208383	62320939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_62208855_62210189_62210368_62211820_62212042_62212215_62212274_62216313_62216458_62217933_62218076_62220266_62220481_62220801_62220966_62221621_62221751_62224488_62224985_62225323_62225486_62228368_62228523_62228926_62229074_62229683_62229898_62231236_62231458_62233823_62234177_62235456_62235715_62236059_62236142_62240172_62240313_62242199_62242375_62244061_62244163_62245197_62245299_62245396_62245510_62249675_62249842_62250586_62250762_62257791_62257984_62260117_62260245_62263895_62264281_62267460_62267587_62269339_62269480_62272232_62272297_62273986_62274207_62275547_62275672_62280516_62280621_62281806_62281858_62283328_62283510_62285963_62286053_62289088_62289263_62292018_62292097_62294609_62294681_62295238_62295292_62301645_62301760_62310423_62310613_62313708_62313893_62320850
101711	chr4	+	2859	4	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4274	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	93.6055553906925	2	115	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	146038188	146063190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146054375_146054491_146058464_146058581_146060726
101712	chrM	-	757	1	Antisense	novelGene_ENSMUSG00000064363.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAAAACTATATGAGGTT	5165	False	NA	NA	False	NA	NA	NA	11023	10266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_10300_11000
101713	chr11	-	332	1	Intergenic	novelGene_2513	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCGGCGGCATCCGG	NA	False	NA	NA	False	NA	NA	NA	108902942	108902610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902600_108902900
101714	chr4	+	3489	6	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	578	4	NA	NA	-22	63380	multi-exon	TRUE	canonical	0	0	junction_1	186.601607710116	3	72	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTAACAAGGTTGACTTG	NA	False	NA	NA	False	NA	NA	NA	146599354	146805997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146599500_146697966_146698060_146797295_146797385_146800377_146800518_146802050_146802609_146803533
101715	chrM	-	1341	1	FSM	ENSMUSG00000064350.1	ENSMUST00000082401.1	67	1	-1339	65	-1339	-65	mono-exon	FALSE	NA	NA	NA	NA	NA	2	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGGCTGAGTAAGCAT	9523	False	NA	NA	False	NA	NA	NA	6665	5324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_5300_6700
101716	chr4	+	3479	6	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	0	2151	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	221.295639360562	16	63	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	2377	False	NA	NA	False	NA	NA	NA	147445767	147477612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147445917_147447267_147447362_147469676_147469759_147472778_147472906_147474017_147474089_147474656
101717	chr5	-	2343	2	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	260	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466818	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125465320_125466760
101718	chr4	+	6459	8	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36445	92522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	35.9858248736462	220	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATAGTTGGTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	145136864	145269980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145174456_145174578_145176036_145180674_145268440_145268629_145268703_145268867_145268910
101719	chr13	+	569	1	Intergenic	novelGene_1431	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66189572	66190141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66189600_66190100
101720	chr18	-	4585	26	NNC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	-85	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	379.943890594388	6	56	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTTGCCTTCCCCATGC	NA	False	NA	NA	False	NA	NA	NA	60981603	60946828	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60951964_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981379
101721	chr4	+	2431	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	42.3411798395378	54	40	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206906	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207838_146291416_146291429_146388486_146388614_146390758_146390897_146391562_146392337_146392757_146393425_146552605
101722	chr13	+	5898	4	Intergenic	novelGene_1307	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	52	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTAAGAGCATGTCATCT	NA	False	NA	NA	False	NA	NA	NA	6719439	6934889	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_6720470_6749719_6750944_6766072_6766552_6931724
101723	chr13	-	1807	14	NNC	ENSMUSG00000021665.10	novel	1905	14	NA	NA	-3	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	644.722976150479	2	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGGGCTGCCCTGTG	NA	False	NA	NA	False	NA	NA	NA	97334806	97312843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314557_97315879_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
101724	chr11	-	1572	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	-2	423	-2	-423	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	5	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCCTTCAAGTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	115915332	115913209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
101725	chr2	+	1652	3	NNC	ENSMUSG00000054766.14	novel	844	3	NA	NA	140	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8858.5	1	14	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGACTGGGGTCATTCTCCT	NA	False	NA	NA	False	NA	NA	NA	29960321	29962585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29960368_29960452_29960541_29961067
101726	chr11	-	477	1	Intergenic	novelGene_2503	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGACCTGGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	108902948	108902471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902500_108902900
101727	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
101728	chr5	+	924	7	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-12	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	7224.07285093081	4	38	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121342616_121343468_121343715_121343816_121343919_121344729_121344874_121345209_121345252_121346453_121346639_121346844
101729	chr5	+	1263	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-189	-72	189	mono-exon	FALSE	NA	NA	NA	NA	NA	27	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	96009500	96010763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
101730	chr15	-	1875	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	1	1	1	-1	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	632	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
101731	chr15	-	2624	18	Antisense	novelGene_ENSMUSG00002075079.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTCCACGGCTGAGGCGC	NA	False	NA	NA	False	NA	NA	NA	12883313	12824975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12825025_12826150_12826253_12827311_12827378_12833913_12834746_12837365_12837460_12842140_12842254_12842385_12842617_12846152_12846293_12848135_12848292_12851879_12851967_12859462_12859546_12861763_12861851_12865112_12865183_12866646_12866733_12867684_12867753_12878738_12878913_12881707_12881832_12883251
101732	chr4	-	3292	6	Antisense	novelGene_ENSMUSG00000119649.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	124	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAATAATAAACAGAAATGC	NA	False	NA	NA	False	NA	NA	NA	130495541	130476719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_130476858_130478732_130478879_130479884_130480183_130490062_130490329_130491370_130491512_130493238
101733	chr2	+	794	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11385	-268	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGACATGCCGCATGGA	NA	False	NA	NA	False	NA	NA	NA	11413649	11425763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
101734	chr16	+	1823	9	NIC	ENSMUSG00000022884.17	novel	2203	10	NA	NA	38	-2	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	676.171564305243	3	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATAGGTGGTCTGGCCA	5812	False	NA	NA	False	NA	NA	NA	22926266	22932694	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
101735	SIRV5	+	1897	14	NNC	SIRV5A	novel	2085	17	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	3121.22529042834	30	27	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1008	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1095_3303_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
101736	chr9	+	6234	4	Intergenic	novelGene_1136	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	129	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATTGCCCCCAAACCACA	NA	False	NA	NA	False	NA	NA	NA	96957623	96973750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_96961295_96962246_96962535_96967108_96967175_96971541
101737	chr17	+	1263	1	Intergenic	novelGene_205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCACCCGTGCCTTCC	NA	False	NA	NA	False	NA	NA	NA	40153888	40155151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155200
101738	chr4	+	2817	4	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-16	3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	27.0924343682881	4	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033851	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146043550_146043631_146054375_146054480_146060726
101739	chr17	-	2483	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	12	25	-4	-25	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	7	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAGAAGATGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	45884185	45878725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
101740	chr9	+	1243	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1536	149	1518	-149	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	5	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64082192	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
101741	chr4	+	1598	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	27	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5565.60650055394	7	64	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCAGTGTGCTGGGCATCT	NA	False	NA	NA	False	NA	NA	NA	150321726	150333328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321778_150323935_150324024_150325501_150325598_150326578_150326600_150328500_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
101742	SIRV5	+	2919	9	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	5170.44606392911	20	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_8523_8586_10858_10992_11133_12935_13039
101743	chr11	-	1205	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-130	-73	130	mono-exon	FALSE	NA	NA	NA	NA	NA	4	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCCCTCCCTACTCTCTTG	4388	False	NA	NA	False	NA	NA	NA	20286086	20284881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284900_20286100
101745	chr4	+	1962	6	Intergenic	novelGene_2048	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	239.935824753204	1	22	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	2312	False	NA	NA	False	NA	NA	NA	146289370	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146297543_146297621_146388441_146388614_146390758_146390897_146392234
101746	chr4	+	1820	7	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-2135	182152	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	150.574916754271	8	24	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146597241	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146597335_146616526_146616611_146619877_146620005_146621233_146621601_146802405_146802693_146802773_146803026_146805394
101747	chrX	-	1745	1	Antisense	novelGene_ENSMUSG00000079297.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTAAAATGTTTTAAACAT	NA	False	NA	NA	False	NA	NA	NA	32944740	32942995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_32943000_32944700
101748	chr16	-	519	1	Intergenic	novelGene_3813	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	33	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCACTTTTGGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101749	chr13	+	5188	9	Antisense	novelGene_ENSMUSG00000052180.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	116	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTCACTCCCAGGCCTC	8567	False	NA	NA	False	NA	NA	NA	34046241	34089189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34047314_34049685_34051724_34051859_34053094_34064604_34064763_34077788_34077930_34079251_34079370_34081326_34081479_34083243_34083423_34089093
101750	chr2	-	2577	15	NNC	ENSMUSG00000039671.19	novel	3817	22	NA	NA	-21	14972	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	241.746251263593	1	84	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACCTGTTTCCTGTGAG	NA	False	NA	NA	False	NA	NA	NA	165726589	165654076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165654779_165657236_165657390_165662461_165662609_165670129_165670596_165675226_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726098_165726160_165726527
101751	chr8	+	2732	14	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	45057	-116	intron_retention	FALSE	canonical	0	0	junction_7	278.839246598801	1	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGGTACACACCTGATT	1495	False	NA	NA	False	NA	NA	NA	107375831	107395878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386276_107387484_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
101752	chr5	-	1808	5	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	131	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	1802.37197881015	2	93	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	9953	False	NA	NA	False	NA	NA	NA	142891445	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890996_142891232_142891318
101753	chrM	+	1268	2	Genic_Genomic	ENSMUSG00000064367.1	novel	1824	1	NA	NA	1060	576	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTAATGACAAACATACGAAA	106	False	NA	9	True	NA	NA	NA	12801	14141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_13029_13100
101754	chr11	-	339	1	Intergenic	novelGene_2512	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	9	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTCCGGCGGCATCCGGT	NA	False	NA	NA	False	NA	NA	NA	108902948	108902609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902600_108902900
101755	chr2	-	1193	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	2	-195	2	195	mono-exon	FALSE	NA	NA	NA	NA	NA	5	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGAAATGTGAGC	NA	False	NA	NA	False	NA	NA	NA	28824619	28823426	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824600
101756	chr15	-	1333	13	NNC	ENSMUSG00000022336.4	novel	1506	13	NA	NA	8	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	767.609746044318	1	27	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTTTATTTTGCTTGA	2764	False	NA	NA	False	NA	NA	NA	43146014	43113456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126673_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
101758	chr4	+	2959	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000070605.5	novel	314	3	NA	NA	-2	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	82.7356483022887	1	59	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146033879	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146033904_146206938_146207223_146209452_146209546_146291416_146291510_146388473_146388614_146390758_146390904_146391317_146392628_146392797_146393458_146552638
101759	chr6	-	463	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	89	18	0	-4	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	6	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCGTGGCATGGTTGG	NA	False	NA	NA	False	NA	NA	NA	72935382	72934347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_72934636_72934895_72935008_72935319
101760	chr4	+	5386	6	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	58	42993	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	84.2368090563739	2	10	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAACAAATGTAAACGCAA	NA	False	NA	NA	False	NA	NA	NA	146206999	146257997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146207223_146209452_146209546_146240246_146240293_146250678_146250737_146251579_146251707_146253158
101761	chr17	-	1074	2	Intergenic	novelGene_90	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGTTGATACATTTAT	NA	False	NA	NA	False	NA	NA	NA	23097164	23095198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_23095458_23096349
101762	chr17	+	2380	4	Genic_Genomic	ENSMUSG00000107430.2	novel	767	1	NA	NA	-10244	196894	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	25	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGAGCTAAAGGGATCTG	NA	False	NA	NA	False	NA	NA	NA	53996489	54204394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_53997588_54006733_54007502_54180084_54180235_54204030
101763	chr4	-	5295	24	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	149	-51	intron_retention	FALSE	non_canonical	0	0	junction_1	81.481555313658	12	171	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTCCTGAACTCTGATT	-2	True	NA	NA	False	NA	NA	NA	41124306	41114477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114545_41114623_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41117493_41117659_41117813_41118089_41118254_41118417_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
101764	chr16	+	1854	10	NIC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1	-7	combination_of_known_splicesites	FALSE	canonical	3	7	junction_8	767.444355967371	1	21	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTTATATAGGTGGTCT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932689	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926631_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930566_22930647_22931916
101765	chr7	+	2918	27	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	36	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	464.433358701285	3	93	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGACTTCTTAGATG	2665	False	NA	-72	True	NA	NA	NA	13012796	13045327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032747_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13041443_13041597_13042395_13042429_13043030_13043182_13044933_13045027_13045120
101766	chr1	+	2379	17	NNC	ENSMUSG00000026496.12	novel	3873	23	NA	NA	-5652	955	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_16	511.374434734471	1	41	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACTTGGTACTGTTCTCC	9327	False	NA	NA	False	NA	NA	NA	180411379	180429774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427822_180429482
101767	chr4	+	2210	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1902	multi-exon	FALSE	non_canonical	0	0	junction_1	42.3411798395378	7	45	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146206906	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146291416_146291510_146365127_146365182_146388486_146388614_146390758_146390897_146392150_146393429_146552609
101768	chr11	-	1827	8	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	8	-24	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	343.012048339592	2	61	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGTTGAATAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	120534587	120530265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534528
101769	chr6	-	2011	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	65	9	-65	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	7577	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGGGTTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
101770	chr11	+	2893	2	Intergenic	novelGene_2350	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57446707	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57446781_57448103
101771	chr4	-	830	6	NNC	ENSMUSG00000028495.15	novel	878	5	NA	NA	-13	195069	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8273.35633464436	1	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAATAAAAAAAGAAT	NA	False	NA	NA	False	NA	NA	NA	86775604	86577827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_86577856_86772927_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
101772	chr4	+	3267	12	Fusion	ENSMUSG00000085101.8_ENSMUSG00000078502.11	novel	3595	4	NA	NA	167	1	multi-exon	TRUE	non_canonical	0	0	junction_1	37.3174897510847	9	73	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145137002	145351912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145137085_145159061_145159261_145239548_145239640_145311773_145311905_145314001_145314095_145315865_145315970_145319498_145319572_145343640_145343746_145347127_145347255_145348721_145350165_145350919_145351517_145351690
101773	chr14	-	1132	1	Antisense	novelGene_ENSMUSG00000045799.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCGGTGGGCGGCGAAG	NA	False	NA	NA	False	NA	NA	NA	13670476	13669344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_13669300_13670500
101774	chr15	-	3757	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	120	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCAGCTACTCAGGGCG	9795	False	NA	NA	False	NA	NA	NA	22705095	22699921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700966_22702289_22704588_22704680
101775	chr17	+	1406	6	NIC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	20	8	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	742.741300857842	4	42	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTCGAGCGAACCACTG	NA	False	NA	NA	False	NA	NA	NA	29251682	29261225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260366
101776	chr2	-	2143	11	Antisense	novelGene_ENSMUSG00000039678.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTCCGGCAGGAAGC	8198	False	NA	NA	False	NA	NA	NA	30040661	30023808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_30023924_30024807_30024885_30027131_30027194_30027293_30027392_30030484_30030566_30032268_30032432_30036661_30036873_30037371_30037535_30038631_30038796_30038942_30039004_30039713
101778	chr17	-	983	3	NNC	ENSMUSG00000001525.11	novel	979	3	NA	NA	383	804	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4390.5	1	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTCTCTTTCCACTCTG	NA	False	NA	NA	False	NA	NA	NA	36147569	36145692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146571_36147110_36147166_36147519
101780	chr5	-	1830	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-1	-8	intron_retention	FALSE	non_canonical	0	0	junction_4	1652.22787774568	5	45	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	8920	False	NA	NA	False	NA	NA	NA	142892478	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891158_142891295_142891448_142892406
101781	chr17	-	1700	1	Intergenic	novelGene_302	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAGGTACCAAAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	80898016	80896316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_80896300_80898000
101783	chr5	+	4373	12	NNC	ENSMUSG00000028973.19	novel	2939	16	NA	NA	8	616	intron_retention	FALSE	non_canonical	0	0	junction_8	57.04195932791	8	150	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTCCCAAAGCTAAAGC	NA	False	NA	NA	False	NA	NA	NA	24599413	24615668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_24599582_24604910_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608200_24611115_24611253_24611397_24612454_24613565_24613817_24614351
101784	chr17	-	1327	5	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	31	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5108.6903593289	2	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45880631	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880307_45880395
101785	chr18	-	3072	7	Intergenic	novelGene_4488	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	121	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCGACTCCCAGCAACCT	NA	False	NA	NA	False	NA	NA	NA	3853670	3765077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr18_-_3765177_3768673_3768754_3778094_3778176_3827479_3827565_3828322_3828357_3828563_3828673_3851086
101786	chr14	-	2776	14	NIC	ENSMUSG00000040472.16	novel	2547	16	NA	NA	-4	13	intron_retention	FALSE	canonical	3	306	junction_10	93.2149009090247	3	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCTCACCGGGCAGTGG	NA	False	NA	NA	False	NA	NA	NA	55959663	55953320	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300
101789	chr12	+	1570	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	0	-2	0	-2	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	29411	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTGGTCTGTTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	80992358	80997279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
101790	chr4	+	1982	11	Antisense	novelGene_ENSMUSG00000028766.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	68	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGGCCGAGCACCCGCC	722	False	NA	NA	False	NA	NA	NA	137469521	137523662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_137470069_137470910_137471137_137473702_137473841_137475071_137475140_137476859_137476996_137479856_137480044_137481181_137481354_137482395_137482514_137482941_137483061_137485882_137486043_137523551
101791	chr12	-	3151	4	NIC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	643	-14	intron_retention	FALSE	canonical	3	11114	junction_3	2322.07421644242	1	91	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGATAAAAAGAAGTGTGG	NA	False	NA	NA	False	NA	NA	NA	110661463	110657475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_110658084_110658547_110660311_110660456_110660778_110661004
101792	chr1	-	564	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-156	270	-156	-270	mono-exon	FALSE	NA	NA	NA	NA	NA	1	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATTCCAATACTTATTAT	NA	False	NA	NA	False	NA	NA	NA	24653888	24653324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653300_24653900
101793	chr17	+	395	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	1171	-102	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGGCCCTGGTGGAGCGCTG	NA	False	NA	14	True	NA	NA	NA	40158414	40158990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40158536_40158716
101795	chr17	+	1728	2	Intergenic	novelGene_228	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	88	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCTGTAGTTCCGAGGT	NA	False	NA	NA	False	NA	NA	NA	40154385	40171435	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40156067_40171388
101796	chr16	-	366	1	Intergenic	novelGene_3838	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCGCTCTTTTCCCGACGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211700_57212000
101797	chr7	+	687	1	Antisense	novelGene_ENSMUSG00000087412.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGCGCTGGCTGGAAAGAG	8265	False	NA	NA	False	NA	NA	NA	92828168	92828855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_92828200_92828900
101798	chr18	-	3697	19	NIC	ENSMUSG00000003778.15	novel	3869	21	NA	NA	15	109	combination_of_known_junctions	FALSE	canonical	3	50	junction_6	161.882378043404	1	123	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAATTAAAATCTTACA	NA	False	NA	NA	False	NA	NA	NA	34757639	34734118	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
101799	chr4	+	3814	5	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-13	2	multi-exon	TRUE	non_canonical	0	0	junction_1	284.26308237265	3	79	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	147056419	147145253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147136965_147137048_147140055_147140183_147141715_147143765_147143852
101800	chr7	-	964	7	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6352.32032191562	9	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTACGATGTGTGCTGT	NA	False	NA	NA	False	NA	NA	NA	44778160	44774986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776678_44778082
101801	chr2	+	4132	6	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	8487	1022	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	48.7688425124074	2	149	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAACCTGTAAGCCAGCCC	NA	False	NA	NA	False	NA	NA	NA	177165125	177170944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177165206_177165410_177165472_177166618_177166858_177167026_177167311_177167394_177167674_177167755
101802	chr4	-	3181	9	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	29	63796	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	103.675877136391	2	86	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	146994018	146912356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913322_146913403_146913612_146914031_146914529_146976152_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146991977_146992072_146993875
101804	chr16	-	564	1	Intergenic	novelGene_3711	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101806	chr11	+	1135	2	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	9	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442393_62442965
101807	chr11	-	8670	39	NNC	ENSMUSG00000109408.2	novel	4320	3	NA	NA	3771	6863	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	148	123	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGCATACCCCAATGGCCAT	NA	False	NA	NA	False	NA	NA	NA	119378244	119332750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_119334616_119336453_119336592_119336934_119337030_119338058_119338182_119339584_119339700_119340070_119340181_119340549_119340701_119340921_119341055_119343333_119343527_119345263_119345406_119346972_119347133_119349092_119349318_119349557_119349739_119350764_119350888_119352716_119352816_119352924_119353108_119354127_119354300_119354393_119354486_119355852_119355941_119356709_119356921_119357047_119357237_119358048_119358175_119358794_119358919_119359661_119359885_119360954_119361061_119362535_119362633_119364186_119364345_119364986_119365160_119367309_119367375_119367872_119368125_119370360_119370494_119370687_119370773_119371575_119371755_119371968_119372172_119373220_119373298_119373753_119373950_119374478_119374571_119374662_119374840_119376828
101808	chr16	-	564	1	Intergenic	novelGene_3712	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101809	chr5	+	703	4	ISM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	318	2207	162	303	internal_fragment	FALSE	canonical	3	7201	junction_2	7467.29314336118	1	16	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGCCCAGCTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	115697843	115699579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_115697948_115698799_115699064_115699157_115699305_115699391
101810	chr16	+	3270	9	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-116	intron_retention	FALSE	canonical	3	441	junction_1	542.263081907666	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTGAACTGGACCCTGTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932564	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929474_22929875_22930014_22930252_22930343_22930566
101811	chr12	-	1249	5	NNC	ENSMUSG00000021131.15	novel	506	5	NA	NA	-25	1325	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3779.76722166855	111190	9	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGTTATAGCCATGTCCT	NA	False	NA	NA	False	NA	NA	NA	80690910	80679470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_80679651_80680814_80681302_80684263_80684385_80687730_80687819_80690537
101812	chr3	+	429	1	Intergenic	novelGene_3064	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	16	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGGGGGCGAGCCCAGAG	NA	False	NA	NA	False	NA	NA	NA	5925398	5925827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925800
101813	chr5	-	3603	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	0	-200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	157.418928772249	3	147	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGGTGTTAGAAAATAGTCA	NA	False	NA	NA	False	NA	NA	NA	31337253	31314064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323751_31325057_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
101814	chr1	-	1347	4	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGACTCACGCGGCGCCA	9074	False	NA	NA	False	NA	NA	NA	86458405	86454447	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454670_86456891_86456967_86457177_86457274_86457451
101815	chr15	-	1292	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	54	5	1	-1	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	20	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
101816	chr11	+	1045	2	FSM	ENSMUSG00000019505.8	ENSMUST00000136938.2	890	2	119	-274	119	-86	multi-exon	FALSE	canonical	3	711	junction_1	0	3	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTAAGTTTAGAAATTACA	NA	False	NA	NA	False	NA	NA	NA	62442620	62443953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442678_62442965
101817	chrM	+	1662	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-289	5	-289	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	8	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGTGAATATAGTTTAC	0	True	NA	NA	False	NA	NA	NA	9877	11539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
101818	chr16	+	564	1	Intergenic	novelGene_3713	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
101819	chrX	+	3753	3	Intergenic	novelGene_3944	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	11	111	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	63977041	63982201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63977473_63977520_63979782_63981140
101820	chr4	+	3120	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	7	1	multi-exon	TRUE	non_canonical	0	0	junction_1	117.579077671892	1	98	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147216501	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216772_147395102_147395148_147534439_147534611_147536132_147536264_147538035_147538146_147592042_147592098_147595209_147595337_147596801_147597092_147599018_147599216_147667932
101821	chr7	+	1175	10	NIC	ENSMUSG00000031068.9	novel	1685	11	NA	NA	4	-406	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	1184.66995976949	1	75	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGCGTGTAGAATGTCTC	NA	False	NA	NA	False	NA	NA	NA	137039388	137069917	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137064689_137064743_137065826_137065867_137066143_137066237_137069661
101822	chr4	-	2987	8	ISM	ENSMUSG00000006219.13	ENSMUST00000006381.11	3101	9	2247	1	492	-1	3prime_fragment	FALSE	canonical	3	1168	junction_5	184.331002187226	1	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGTGTCTTGTTTTTGTC	NA	False	NA	NA	False	NA	NA	NA	141323288	141303373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205
101823	chr17	+	3676	9	NNC	ENSMUSG00000001228.15	novel	949	4	NA	NA	-7974	-23	intron_retention	FALSE	non_canonical	0	0	junction_1	772.100382074766	2	119	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATAAAATTCTGGCCGG	4578	False	NA	NA	False	NA	NA	NA	56602346	56630463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56602407_56621123_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625385_56627161_56627283_56627396_56627543_56629020
101824	chr16	-	1003	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	77	5	-9	-5	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	309	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGACCAGCTGACAAGGCT	7210	False	NA	NA	False	NA	NA	NA	18066519	18057652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
101825	chr4	-	2104	2	Intergenic	novelGene_2012	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGATTTTGGTCTGTGGTG	NA	False	NA	NA	False	NA	NA	NA	143712787	143710580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_143712611_143712713
101826	chr17	-	2097	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	45	1417	mono-exon	FALSE	NA	NA	NA	NA	NA	7	80	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGGCGTGCGATCGGCCCG	NA	False	NA	NA	False	NA	NA	NA	40159673	40157576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157600_40159700
101827	chr1	-	1253	1	Intergenic	novelGene_403	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGGAAGGAAGGAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	87611405	87610152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_87610200_87611400
101828	chr5	+	352	1	Intergenic	novelGene_963	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	411	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197823	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
101829	chr8	+	3476	12	Antisense	novelGene_ENSMUSG00000031591.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	80	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCACCTCCACCAGCAGCA	NA	False	NA	NA	False	NA	NA	NA	41793699	41827673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799230_41799336_41800111_41801122_41801176_41802591_41802664_41804932_41805010_41807050_41807955_41813289_41813337_41827546
101830	chr10	-	2813	1	Intergenic	novelGene_3471	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	100	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTTTCTTGTGGGTGATT	NA	False	NA	NA	False	NA	NA	NA	74553421	74550608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74550600_74553400
101831	chr3	+	1901	7	ISM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	6907	4	76	1	3prime_fragment	FALSE	canonical	3	3249	junction_2	90.417549918881	1	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCAGACCGGCTTGACTTT	NA	False	NA	NA	False	NA	NA	NA	89993753	90008204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
101833	chr5	-	1810	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	8	-6	intron_retention	FALSE	non_canonical	0	0	junction_3	1537.10969752397	2	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACAGCTTGTGGCTCTGT	8929	False	NA	NA	False	NA	NA	NA	142892469	142888875	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890377_142890440_142890538_142890991_142891232_142891318_142891448_142892406
101834	chr4	-	1040	3	Intergenic	novelGene_1929	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	718	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGATAGAAATTAAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	109866189	109862640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_109862811_109864515_109864848_109865651
101835	chr1	-	1647	8	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	178	-213	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2296.09605679745	11	58	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGGTGCAAGAGCCATA	4633	False	NA	NA	False	NA	NA	NA	55127005	55117206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119581_55122883_55122967_55123691_55123945_55125924_55126101_55126937
101836	chr4	+	2287	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	1250	5	NA	NA	35	0	multi-exon	FALSE	non_canonical	0	0	junction_1	42.2678533707524	3	34	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216529	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216737_147445822_147445910_147447267_147447362_147639766_147639863_147661528_147661587_147665698_147665826_147667290_147667445_147668191
101837	chr4	+	5825	4	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4883	2994	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	75.7935793234933	45	218	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACCCTACCCCGCTGCTA	NA	False	NA	NA	False	NA	NA	NA	147395013	147421185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724
101838	chr5	-	2674	10	NNC	ENSMUSG00000001467.6	novel	3931	10	NA	NA	-36	-972	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	234.046054347335	1	110	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGTGTACTGGCTGG	NA	False	NA	NA	False	NA	NA	NA	4154457	4132116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151173_4151355_4152927_4153027_4154133
101839	chr17	+	3209	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	597.874999941924	1	80	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	506	False	NA	NA	False	NA	NA	NA	56610406	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610566_56616466_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
101841	chr2	+	314	5	NIC	ENSMUSG00000058318.16	novel	2701	19	NA	NA	6	952	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	2.87228132326901	1	7	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAGGGAGCCCACTACCTC	NA	False	NA	NA	False	NA	NA	NA	92015833	92045895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_92015934_92016895_92016955_92031856_92031884_92044393_92044435_92045808
101842	chr7	+	1504	13	ISM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	2485	246	2146	-246	3prime_fragment	FALSE	canonical	3	1087	junction_8	72.4033838988206	2	53	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTGCATTCTTTCTAAG	NA	False	NA	NA	False	NA	NA	NA	120236883	120258501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
101843	chr11	+	4299	21	NNC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	3	-8	intron_retention	FALSE	canonical	0	0	junction_18	156.275037993916	2	72	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGGAAATGAAAAAAGAAC	NA	False	NA	NA	False	NA	NA	NA	6241635	6306570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6299228_6299314_6299494_6299841_6299914_6300605_6300739_6304903_6305093_6305290_6305446_6305553
101844	chr4	+	2792	4	NNC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	6	0	intron_retention	FALSE	non_canonical	0	0	junction_3	189.78291692235	1	99	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	NA	False	NA	NA	NA	98615035	98626717	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_98615078_98615631_98615708_98621379_98622295_98624958
101845	chr12	-	2018	11	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGACTGCCAGCGCCCGCG	3502	False	NA	NA	False	NA	NA	NA	24764102	24758281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24758443_24758556_24758631_24758934_24759083_24759321_24759438_24760352_24760488_24761443_24761540_24761666_24761800_24762657_24762763_24762857_24762972_24763076_24763333_24763422
101846	chr2	+	8547	2	Antisense	novelGene_ENSMUSG00000075120.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	36	54	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGGGCGAAGTGGGT	NA	False	NA	NA	False	NA	NA	NA	88494960	88541006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_88498535_88536033
101847	chr17	-	2334	3	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	-2	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	916	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCTACATTAAGCATTAAA	4815	False	NA	NA	False	NA	NA	NA	25179621	25161479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25163678_25175084_25175141_25179541
101848	chr13	+	2903	5	NNC	ENSMUSG00000095909.3	novel	449	3	NA	NA	2730	874	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	103.038827633082	4	91	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGTGTCACTGTACTCTTT	NA	False	NA	NA	False	NA	NA	NA	66264023	66271524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66264130_66264730_66264842_66267450_66267578_66267777_66267839_66269026
101849	chr9	-	663	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	-52	8	-52	-8	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	129	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAAAATGTGCGTCGTCA	NA	False	NA	NA	False	NA	NA	NA	78275511	78274341	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_78274577_78275002_78275186_78275266
101850	chr7	+	1755	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2898.69849753158	1	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499851_46500212_46500483_46501300_46501419_46503406_46503531_46504400
101851	chr13	-	3375	6	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7259	-39	intron_retention	TRUE	non_canonical	0	0	junction_1	29.6	16	130	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGACATAAAAGAACACATAA	1335	False	NA	NA	False	NA	NA	NA	67010194	66997753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66999469_66999636_66999964_67000047_67000547_67000630_67000944_67002549_67002937_67010060
101852	chr1	+	799	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	-1	418	-1	-77	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	1	23	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTTGTACATATTGTT	NA	False	NA	NA	False	NA	NA	NA	86454446	86458016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
101853	chr17	-	2201	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	81	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	4	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	36149019	36144812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145525_36145793_36146932_36147054_36147166_36147519_36147629_36148888
101854	chr17	+	2360	3	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	21784	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	88	1	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTAAGGGATGCAACAT	NA	False	NA	NA	False	NA	NA	NA	17306158	17309885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17306213_17307505_17309694_17309767
101855	chr4	-	2365	11	Fusion	ENSMUSG00000078495.11_ENSMUSG00000062518.8	novel	2729	6	NA	NA	-18	-46	multi-exon	FALSE	non_canonical	0	0	junction_1	88.9505480590199	8	49	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	9505	False	NA	NA	False	NA	NA	NA	147894263	147758004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147758330_147759255_147759817_147839021_147839464_147840621_147840693_147842158_147842286_147845677_147845736_147876648_147876722_147876925_147877048_147891499_147891641_147893153_147893289_147893953
101856	chr14	+	1836	13	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	6	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	601.254498712668	1	47	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAATCCTCAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	30271143	30295574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282606_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
101857	chr16	-	564	1	Intergenic	novelGene_3714	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101858	chr6	-	2196	10	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1762.30407544243	3	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9286	False	NA	NA	False	NA	NA	NA	128415623	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407844_128409384_128409625_128410068_128410251_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
101859	chr2	-	5199	1	Genic_Genomic	ENSMUSG00000086563.2	novel	NA	NA	NA	NA	-32	2826	mono-exon	FALSE	NA	NA	NA	NA	NA	1	175	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTAGGT	NA	False	NA	NA	False	NA	NA	NA	150548828	150543629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_150543600_150548800
101860	chr4	+	2742	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	7	182324	multi-exon	FALSE	non_canonical	0	0	junction_1	60.6760269539262	3	63	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147216501	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147316807_147316901_147390101_147390233_147393100_147393194_147409273_147409335_147413438_147413566_147415724_147415863_147416444_147416754_147416922_147418058_147600176
101861	chr3	+	2313	21	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	463.285276584525	1	74	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	NA	False	NA	NA	NA	151916160	151938409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916248_151916293_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927874_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
101862	chr16	+	206	1	Intergenic	novelGene_3839	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	5	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCGGCGGACTGGAGAGG	NA	False	NA	NA	False	NA	NA	NA	57211704	57211910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211700_57211900
101863	chrX	+	1304	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-69	-25	69	mono-exon	FALSE	NA	NA	NA	NA	NA	39	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	13068784	13070088	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
101864	chr11	+	2668	17	ISM	ENSMUSG00000020290.15	ENSMUST00000102870.8	3471	26	22789	-3	-5800	3	3prime_fragment	FALSE	canonical	3	1745	junction_12	164.369237066277	6	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGTTTTTTGTATAAG	NA	False	NA	NA	False	NA	NA	NA	23228843	23246236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
101865	chr16	+	2972	9	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	0	-1	intron_retention	FALSE	canonical	3	441	junction_1	712.382797377927	3	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22930014_22930252_22930343_22930566_22930647_22931100
101866	chr5	+	2173	9	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-172	-8	intron_retention	FALSE	canonical	3	450	junction_1	967.654089796555	2	62	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACAATATATTCTCGCT	584	False	NA	NA	False	NA	NA	NA	77099451	77115344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
101867	chr4	+	3790	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-30634	-2	multi-exon	TRUE	non_canonical	0	0	junction_1	0.372677996249965	3	86	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCTTTGATTGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	145142675	145265756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145143595_145160131_145160385_145173283_145173342_145174456_145174578_145176036_145176697_145263891_145264736_145264821
101868	chr13	+	919	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-12	31	-12	-31	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCAAAAAAAACAAAAAAACA	7950	False	NA	NA	False	NA	NA	NA	74554515	74555434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555400
101869	chrX	-	1676	14	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	15	28	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGCTCGGAAGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	20542297	20524659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20524765_20534686_20534813_20534939_20534952_20536440_20536542_20536780_20536871_20536976_20537109_20537589_20537689_20537933_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115
101870	chr6	+	2162	4	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	25	-24	intron_retention	FALSE	canonical	0	0	junction_3	2145.61169729184	116	116	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACACTAATTTTACC	NA	False	NA	NA	False	NA	NA	NA	122684551	122691568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689685_122690110
101871	chr2	+	1930	8	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	1692	-111	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	524.439525900299	1	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAGACTTCTTCCAAGG	3924	False	NA	NA	False	NA	NA	NA	26282630	26287023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285910_26286140
101872	chr8	+	5160	12	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	217	-2098	intron_retention	FALSE	canonical	0	0	junction_7	1239.99797387198	11	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111768574	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111772304_111773562_111773742_111774543_111775374_111777701_111777999_111778905_111779154_111779822_111780641_111780756_111780844_111781140
101873	chr5	-	2098	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-78	-79	-78	79	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833633	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
101874	chr1	+	1921	13	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	19	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTGTCACCAGGCTTCA	NA	False	NA	NA	False	NA	NA	NA	20873492	20884977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873878_20875039_20875132_20875486_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882396_20882786_20882915_20883178_20883338_20884621_20884731_20884911
101875	chr13	-	2625	4	Intergenic	novelGene_1428	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	98.5235448453256	1	50	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACATAAAAGAACACATAAT	NA	False	NA	NA	False	NA	NA	NA	65960807	65950519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_65952817_65952900_65953125_65954300_65954362_65960764
101876	chr2	-	1254	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-181	-73	181	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824694	28823440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
101877	chr16	+	1762	10	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	851.837360585276	3	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6892	False	NA	NA	False	NA	NA	NA	22927346	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22927384_22927468_22927602_22928734_22928904_22928983_22929108_22929369_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
101878	chr6	-	5369	1	Antisense	novelGene_ENSMUSG00000030007.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	110	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCGCCGGAGAAATGCCCA	NA	False	NA	NA	False	NA	NA	NA	85434398	85429029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_85429000_85434400
101879	chr15	-	5001	4	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	160	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700402_22700568_22700924_22700965_22702144_22702210
101880	chr10	+	3074	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	0	15	0	multi-exon	FALSE	canonical	3	5618	junction_10	706.418033369635	4	85	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
101881	chrUn_JH584304v1	-	4571	2	Intergenic	novelGene_4637	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_1	0	3	134	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGTGAGCCCTTTGAAGA	NA	False	NA	NA	False	NA	NA	NA	59678	52245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_55702_58563
101882	chr8	+	3427	11	NNC	ENSMUSG00000052794.14	novel	2887	8	NA	NA	2763	7255	intron_retention	FALSE	non_canonical	0	0	junction_1	0	7	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTAGCCGTTCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	73214496	73222100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_73215202_73215279_73215465_73215591_73215688_73215823_73215949_73216022_73216165_73216247_73216335_73216644_73216781_73216923_73218363_73220225_73220405_73221610_73221890_73222046
101884	chr9	+	1270	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1491	167	1473	-167	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	3	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCAAACATGTGGTGACAAA	NA	False	NA	NA	False	NA	NA	NA	64082147	64085781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
101885	chr17	-	4526	1	Intergenic	novelGene_23	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	85	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCGCTTGGCGGGTGTTG	NA	False	NA	NA	False	NA	NA	NA	17221985	17217459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_17217500_17222000
101886	chr17	+	712	1	Intergenic	novelGene_227	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGCTGGGGAGAGGGCT	NA	False	NA	NA	False	NA	NA	NA	40154310	40155022	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154300_40155000
101887	chrM	+	820	2	Genic_Genomic	ENSMUSG00000064337.1	novel	955	1	NA	NA	61	-1	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATAGTGTAGCTTAATATT	18	False	NA	36	True	NA	NA	NA	130	1023	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_219_291
101888	chr8	+	3138	20	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	2994	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	1015.56032321232	2	69	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111763541	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780647_111780763_111780844_111781140_111781255_111781800
101891	chr1	-	2623	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	2436	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	639.022517086644	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTCTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	20888048	20873195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873524_20873664_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016
101892	chrM	-	1944	2	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATTATGGAATTAATTGA	1	True	NA	7	True	NA	NA	NA	3702	1676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2603_2684
101893	chr19	+	1770	5	Antisense	novelGene_ENSMUSG00000025024.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	77	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGACATCTGAGGAAAATAA	NA	False	NA	NA	False	NA	NA	NA	53367832	53377846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_53369035_53369674_53369824_53371987_53372152_53372885_53373027_53377732
101894	chr4	+	4595	1	Intergenic	novelGene_1843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	68	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGCTGCTGTGGCTTAG	NA	False	NA	NA	False	NA	NA	NA	51649884	51654479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_51649900_51654500
101895	chr4	+	6459	8	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36445	92522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	35.9858248736462	214	56	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTATAGTTGGTGGTCATG	NA	False	NA	NA	False	NA	NA	NA	145136864	145269980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145174456_145174578_145176036_145180674_145268440_145268629_145268703_145268867_145268910
101898	chr7	-	1177	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	10	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	7101.17241254239	13	9	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398332	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396835_126396949_126398216
101899	chr18	+	3485	20	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	-23	-3374	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	160.968743202178	2	78	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTGACCCCCAGCAGGT	9027	False	NA	NA	False	NA	NA	NA	32970340	32996079	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32977520_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977
101900	chr7	+	6568	2	FSM	ENSMUSG00000049791.5	ENSMUST00000058755.5	6720	2	95	57	95	-57	multi-exon	FALSE	canonical	3	13	junction_1	0	12	133	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTTGCTATTTAAT	NA	False	NA	NA	False	NA	NA	NA	89053657	89062285	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_89054180_89056239
101901	chr11	-	3486	2	Antisense	novelGene_ENSMUSG00000020412.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	112	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAACAAGGGAGATATA	NA	False	NA	NA	False	NA	NA	NA	4618043	4614479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_4615745_4615822
101902	chr9	+	1403	8	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1451	-148	intron_retention	FALSE	canonical	3	16882	junction_2	1488.93468285077	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTTGTGTGACTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	64082125	64085800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085300_64085504
101903	chr5	-	2351	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	7	260	5	multi-exon	FALSE	canonical	3	916	junction_1	0	970	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCATTTGTGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	125466818	125463035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
101904	chr5	+	4418	15	NIC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	-872	-95	intron_retention	FALSE	canonical	0	0	junction_3	551.176256116065	3	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTAGAGTTGTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108219908	108256040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
101905	chr15	-	1447	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	64	-5	-29	5	multi-exon	FALSE	canonical	3	2495	junction_1	136.260065887095	1	48	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGCTTGAATTTCCTT	2727	False	NA	NA	False	NA	NA	NA	43146051	43113448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
101906	chr6	-	2341	10	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	70	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1282.85195396915	3	64	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8555	False	NA	NA	False	NA	NA	NA	145021840	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144985199_144985362_144993017_144993090_145021614
101907	chr9	+	2204	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	200	28	-5	-28	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	34226	17	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCAATAAACAGCAGCTGAA	1864	False	NA	NA	False	NA	NA	NA	59563850	59586630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
101908	chr6	-	1180	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13741	16	4172	1	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122705963	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706000
101909	chr3	-	445	1	Antisense	novelGene_ENSMUSG00000057036.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGAGTTTCCGGGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	24387712	24387267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_24387300_24387700
101911	chr18	-	959	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	-15	21	-15	-21	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7408	False	NA	NA	False	NA	NA	NA	61393058	61392099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_61392100_61393100
101912	chr1	+	838	1	Antisense	novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACTATGGAGATTTTAAG	NA	False	NA	NA	False	NA	NA	NA	24653055	24653893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24653100_24653900
101913	chr2	-	872	3	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11337	176	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11426178	11413665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11413710_11413812_11414149_11425686
101914	chr10	-	1828	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-38	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	610.171851930986	2	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899757	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887094_116888997_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
101915	chr15	-	2540	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	51	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGCCCAGGTAAATCAGGG	9926	False	NA	NA	False	NA	NA	NA	22704964	22700974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22703397_22704846
101916	SIRV6	+	1455	1	FSM	SIRV6A	SIRV603	1969	1	499	15	499	-15	mono-exon	FALSE	NA	NA	NA	NA	NA	1	94	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATCACAAAGAAATCATGG	NA	False	NA	NA	False	NA	NA	NA	9498	10953	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_SIRV6_+_9500_11000
101917	chr2	-	2854	5	NNC	ENSMUSG00000078868.4	novel	1581	4	NA	NA	-5524	1446	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	3.89711431702997	1	105	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGGGTATTCCTGTGAAA	NA	False	NA	NA	False	NA	NA	NA	177021624	177004866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177005497_177005644_177006909_177006992_177007750_177009116_177009225_177021529
101918	chrUn_MU069435v1	-	467	1	Intergenic	novelGene_4723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	467	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_500
101919	chr5	-	1191	1	FSM	ENSMUSG00000094708.2	ENSMUST00000180167.2	1002	1	-1	-188	-1	188	mono-exon	FALSE	NA	NA	NA	NA	NA	2	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	106011569	106010378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_106010400_106011600
101920	chrM	+	583	1	FSM	ENSMUSG00000064356.1	ENSMUST00000082407.1	204	1	-3	-376	-3	376	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTATTATTATTGAAACAA	-14	True	NA	NA	False	NA	NA	NA	7762	8345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8300
101921	chrX	+	3453	25	NIC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	38	-475	combination_of_known_splicesites	FALSE	canonical	1	1	junction_11	725.809690343979	3	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTAGCCATCCTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	20529174	20548943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
101922	chr11	-	805	7	NNC	ENSMUSG00000057113.14	novel	1633	11	NA	NA	2629	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7630.18722829846	3	4	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAGTATTTTAATAAAGTA	NA	False	NA	NA	False	NA	NA	NA	33110443	33102529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109942_33109996_33110333
101923	chr2	+	4990	8	Antisense	novelGene_ENSMUSG00000085513.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	171	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACACATTCCACAGAAAC	4741	False	NA	NA	False	NA	NA	NA	177005693	177269978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_177007040_177007122_177007588_177078350_177079701_177112558_177113046_177260961_177262086_177263225_177263286_177263477_177263578_177269920
101924	chr17	-	4713	1	Antisense	novelGene_ENSMUSG00000039218.18_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	32	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATAATTCTTTCATGCTT	NA	False	NA	NA	False	NA	NA	NA	24037452	24032739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_24032700_24037500
101925	chr9	-	4345	2	Intergenic	novelGene_982	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	57	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGATCTCCCATGCTCATG	NA	False	NA	NA	False	NA	NA	NA	4965946	4767567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_4770593_4964626
101926	chr12	-	1418	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2741.37956481173	52	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637774_111637864_111638014_111638199_111638408_111638663
101927	chr14	+	942	6	ISM	ENSMUSG00000021771.15	ENSMUST00000172727.2	1291	8	5372	-282	-12	0	3prime_fragment	FALSE	canonical	3	2225	junction_1	118.070148640543	2	28	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGGTGTGCATGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	21887886	21895587	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
101928	chr4	+	2363	9	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	2	-1876	multi-exon	FALSE	non_canonical	0	0	junction_2	41.4395267226835	1	22	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146200130	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146291416_146291514_146368119_146368209_146384369_146384431_146388486_146388614_146390758_146390897_146391562_146392337_146392757_146393429_146552609
101929	chr16	-	554	1	Intergenic	novelGene_3686	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	20	20	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212029	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101930	chr4	-	1230	8	NNC	ENSMUSG00000041459.16	novel	1904	7	NA	NA	4	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	510.230200147793	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGTCTTTGTTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	148711207	148701321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148701501_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709825_148711133
101931	chr11	+	5236	3	Intergenic	novelGene_2226	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	141	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	19359359	19366097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_19359738_19359805_19362834_19364267
101932	chr15	-	3937	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	7	-12	7	9	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	2	103	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTTCGTGAGTTATTT	NA	False	NA	NA	False	NA	NA	NA	96953830	96892691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
101933	chr17	-	2447	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	3295.6876080721	19	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGCTCTCCTTGTAACA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882407_45882546_45882690_45882838_45884092
101934	chr16	-	564	1	Intergenic	novelGene_3715	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
101935	chr10	+	1504	6	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	1035	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2725.70045309458	239	22	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	3216	False	NA	NA	False	NA	NA	NA	81013499	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015272_81017703
101936	chr3	-	1143	2	Genic_Genomic	ENSMUSG00000074479.4	novel	730	1	NA	NA	-64	1099	multi-exon	FALSE	canonical	0	0	junction_1	0	17	9	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGCTGATCAGGCT	8763	False	NA	NA	False	NA	NA	NA	88484510	88482617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_88482804_88483553
101937	chr5	+	989	4	NNC	ENSMUSG00000034211.15	novel	1208	4	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	214.756192511933	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGCAGCTTGATTTTT	776	False	NA	NA	False	NA	NA	NA	129792582	129795545	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129792614_129792747_129793026_129793790_129793889_129794963
101938	chr4	-	2501	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	20	1	20	-1	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	1	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGCTGAGTCTTTGTGGT	NA	False	NA	NA	False	NA	NA	NA	137523675	137469044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
101939	chr5	+	1815	10	NNC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	-4936	20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	832.160745392883	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCTGTAAATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	108208603	108255356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228673_108228755_108241990_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
101940	chr15	-	2653	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	-45	1397	-45	307	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	13	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATTATGGCGTTAAAATAA	NA	False	NA	NA	False	NA	NA	NA	11399796	11383783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
101941	chr5	+	3056	1	Intergenic	novelGene_755	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAACTTGTTGACGTTTA	NA	False	NA	NA	False	NA	NA	NA	100118259	100121315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_100118300_100121300
101942	chr7	-	3250	19	ISM	ENSMUSG00000035401.10	ENSMUST00000038359.6	3564	20	-20	4201	-7	324	5prime_fragment	FALSE	canonical	3	22	junction_2	20.3537390019137	1	78	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGCCAGATGGCACTCC	3714	False	NA	NA	False	NA	NA	NA	98305778	98244007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_98244520_98246239_98246392_98248958_98249001_98249878_98250035_98251789_98251955_98259873_98260073_98262190_98262365_98264682_98264820_98268505_98268677_98270597_98270748_98275672_98275928_98279337_98279615_98286467_98286728_98290699_98290876_98294373_98294416_98295655_98295731_98297011_98297112_98303950_98304060_98305680
101943	chr11	+	2209	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	60	4434	27	-4434	multi-exon	FALSE	canonical	3	6361	junction_7	586.595613027527	1	86	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAACAAAAACCAAGCAAAAC	NA	False	NA	NA	False	NA	NA	NA	55360570	55391230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
101945	chr15	-	3671	23	Antisense	novelGene_ENSMUSG00002076923.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	62	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGCCGTCCAGGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	74447954	74400921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_74401794_74410149_74410309_74411049_74411168_74411560_74411719_74412242_74412407_74412663_74412836_74413370_74413541_74413634_74413737_74415101_74415211_74415355_74415549_74416122_74416192_74416790_74416902_74419467_74419610_74420117_74420195_74420378_74420484_74421862_74421906_74435807_74435950_74441716_74441820_74443259_74443363_74443921_74444074_74444654_74444726_74445950_74446015_74447682
101946	chr4	+	2555	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	41.3156674277446	1	63	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147447267_147447362_147449058_147449174_147536170_147536264_147661528_147661587_147665698_147665826_147667290_147667431_147668006
101947	chr15	-	1854	15	NNC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	8	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	447.251840894673	3	61	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATAAAATTTCATTCCCT	2753	False	NA	NA	False	NA	NA	NA	77855005	77843228	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_77843323_77843711_77843990_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
101948	chr4	+	2750	3	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4260	3	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	19.5	6	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146038174	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146054375_146054480_146060726
101949	chr1	-	2027	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	34	34	34	-30	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	5	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATAAAGTGCCTTCTGGG	NA	False	NA	NA	False	NA	NA	NA	135186272	135181346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
101950	chr4	-	3786	8	Antisense	novelGene_ENSMUSG00000083704.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	114	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCGGAAATTCCTGTCA	NA	False	NA	NA	False	NA	NA	NA	147144913	147056414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147056578_147057158_147057316_147058400_147058496_147115001_147115077_147136959_147137046_147140053_147140182_147141714_147144572_147144688
101951	chr17	+	2034	9	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	19	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGCCTGTGTCCACCAAA	NA	False	NA	NA	False	NA	NA	NA	45878808	45882418	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879051_45879153_45879491_45879785_45880051_45880163_45880314_45880395_45880753_45881183_45881493_45881591_45881721_45881938_45882103_45882337
101952	chr4	+	2302	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-20	0	multi-exon	FALSE	non_canonical	0	0	junction_1	44.300919048835	1	31	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216474	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147447267_147447362_147536170_147536238_147665698_147665826_147667290_147667436_147667927_147668422_147668589
101953	chr2	+	3490	25	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	0	-132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	182.534010339322	1	91	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCTAAAAGTGTCTTCAG	NA	False	NA	NA	False	NA	NA	NA	166747959	166788177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769201_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
101954	chr9	-	1492	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	54	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4740.55454432866	1	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGTGTTGGTCAATGCT	7154	False	NA	NA	False	NA	NA	NA	78388952	78385736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78385988_78386328_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
101955	chrX	+	1572	11	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-2394	-480	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1075.07367189416	6	39	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCAGATGTAGCCATCCTG	NA	False	NA	NA	False	NA	NA	NA	20541921	20548938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20541991_20542117_20542261_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
101956	chr10	-	4901	13	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	1142	355	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.6559585023387	2	102	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGAACATCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	62714651	62648045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62648797_62649080_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655309_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954_62676158_62700586_62700641_62713930
101957	chr5	+	2309	2	Antisense	novelGene_ENSMUSG00000051391.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	31	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCATACCAGCATAGCTA	2136	False	NA	NA	False	NA	NA	NA	135937240	135939641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135938096_135938187
101958	chr2	-	2398	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-2	5	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_1	196.40138526047	2	88	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGTTGTGTTTAATTTA	NA	False	NA	NA	False	NA	NA	NA	165726161	165669043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669852_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165726098
101959	chr2	-	1182	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-109	-73	109	mono-exon	FALSE	NA	NA	NA	NA	NA	7	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	28824694	28823512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823500_28824700
101960	chr4	+	6374	9	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36445	76783	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	34.0183773863481	302	73	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCAGTCCAGGGATTTAC	NA	False	NA	NA	False	NA	NA	NA	145136864	145254241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145174456_145174578_145176036_145180699_145216505_145216657_145216731_145216898_145216941_145217552_145253857
101961	chr14	+	1455	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	2	1272	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	20	35	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359964	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63379877_63380322
101962	chr3	+	2718	2	Genic_Genomic	ENSMUSG00000095661.2	novel	2798	1	NA	NA	-49	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAGAAAAATA	NA	False	NA	NA	False	NA	NA	NA	12920846	12923688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_12921087_12921210
101963	chr5	-	1268	4	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	216	-9	intron_retention	FALSE	non_canonical	0	0	junction_2	1973.66483701993	4	44	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAACAGCTTGTGGCTC	3877	False	NA	NA	False	NA	NA	NA	142891360	142888878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142889986_142890987_142891232_142891318
101965	chr11	+	1820	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	0	-73	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	1092	18	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
101966	chr7	-	4984	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	24	2987	11	1195	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	174	134	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGTGACCTGGGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	110682213	110669943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
101967	chr2	+	1277	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11385	216	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11413649	11426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414319_11425639
101968	chr5	-	1814	5	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1063	2	130	-2	3prime_fragment	FALSE	canonical	3	4052	junction_3	83.3351666465004	3	52	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	9952	False	NA	NA	False	NA	NA	NA	142891446	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
101969	chr7	+	643	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108430.10	774	6	131	0	131	0	multi-exon	FALSE	canonical	3	8873	junction_5	7497.54368843557	82	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	24583926	24589231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
101970	chr4	+	4373	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14303	2821	multi-exon	TRUE	non_canonical	0	0	junction_3	40.7621829095984	2	134	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCCCTTACTCTGCTG	NA	False	NA	NA	False	NA	NA	NA	145159006	145180279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145176036_145176411_145176494
101971	chr16	+	4226	7	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	intron_retention	FALSE	canonical	1	12	junction_4	751.450319936943	3	187	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22929094_22929329_22929474_22929884_22930014_22930252_22930343_22930566
101972	chr4	-	2142	8	Antisense	novelGene_ENSMUSG00000095096.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	29	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAGGGGCCCCGACCCGAC	NA	False	NA	NA	False	NA	NA	NA	146552873	146200168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146200276_146291419_146291509_146293437_146293491_146388484_146388613_146390757_146390903_146391904_146392661_146392828_146393427_146552607
101973	chr7	-	1380	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-13	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6736.75124666	15	13	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGAGTCTGTTGTTCATG	NA	False	NA	NA	False	NA	NA	NA	126398355	126394411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395511_126395858_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
101974	chr4	-	3123	17	NNC	ENSMUSG00000028809.17	novel	2940	17	NA	NA	0	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	397.930878891046	2	104	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGCCACTCACATTT	NA	False	NA	-73	True	NA	NA	NA	135074515	135047799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048443_135049760_135049811_135051224_135051421_135052129_135052592_135054402_135054532_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425
101975	chr9	+	1395	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	5999.94651828016	75	28	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083008_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
101976	chr11	+	3105	1	NIC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-908	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	2	119	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	1479	False	NA	NA	False	NA	NA	NA	52277115	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_52277100_52280200
101977	chr4	+	2618	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	38.0266313438099	1	79	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206906	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207224_146207708_146207846_146291416_146291514_146368119_146368209_146381118_146381194_146388558_146388614_146390758_146390897_146391646_146392407_146392742_146393458_146552638
101978	chr17	+	5972	14	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-29	-12	intron_retention	FALSE	non_canonical	0	0	junction_13	54.0845273130362	60	50	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTACTTTATATTTTCC	9361	False	NA	NA	False	NA	NA	NA	36152538	36170550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159680_36159992_36161186_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36169829
101980	chr3	+	2037	16	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	348.101262406342	178	39	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGAAATGTTATTTTGTTT	4853	False	NA	NA	False	NA	NA	NA	34074250	34123487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108369_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
101981	chr4	+	2288	7	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-2	256529	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	79.3804132012425	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	146033879	146319720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034046_146036308_146036384_146058453_146058581_146060726_146060865_146061196_146061939_146062358_146063091_146319412
101982	chr3	-	3823	27	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	-4	-17	intron_retention	FALSE	non_canonical	0	0	junction_2	359.043817684905	3	104	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTTTGCCCTTTAAGAT	3543	False	NA	NA	False	NA	NA	NA	89959786	89907463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909798_89915530_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942004_89945676_89945773_89946156_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
101983	chr17	+	1748	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	3	98	3	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	274	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-22	True	NA	NA	NA	40157246	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
101984	chr11	-	2328	14	NNC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	8	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	1126.59438104771	9404	18	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9273	False	NA	NA	False	NA	NA	NA	106679701	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679205_106679584
101985	chr16	-	431	1	Intergenic	novelGene_3836	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGAAGCCCGGCTCGCTGG	NA	False	NA	NA	False	NA	NA	NA	57212003	57211572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211600_57212000
101986	chr4	+	2550	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000070605.5	novel	410	4	NA	NA	2394	-1876	multi-exon	TRUE	non_canonical	0	0	junction_2	41.3037528561268	2	44	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146036308	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146036397_146209452_146209546_146312913_146312972_146388486_146388614_146390758_146390904_146391317_146392387_146392722_146393416_146552596
101987	chr16	+	1443	1	Intergenic	novelGene_3861	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTAAGAGACTCATGTT	NA	False	NA	NA	False	NA	NA	NA	93265427	93266870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_93265400_93266900
101988	chr7	+	1192	6	NNC	ENSMUSG00000063229.16	novel	1277	7	NA	NA	0	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3313.94234107958	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAAATAAAACCTTGAACA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498515_46501320_46501419_46503406_46503531_46504400
101989	chr4	-	2800	7	Antisense	novelGene_ENSMUSG00000078496.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTAAACCGCGGAATTTTC	NA	False	NA	NA	False	NA	NA	NA	147600493	147533637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147533954_147536168_147536257_147591989_147592096_147595207_147595336_147596800_147597142_147597802_147599559_147600428
101990	chr4	+	2670	6	NNC	ENSMUSG00000065999.14	novel	552	6	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	41.3811551312913	2	56	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147637733	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661481_147661572_147665698_147665826_147667290_147668834_147668966
101992	chr19	+	834	4	NNC	ENSMUSG00000024661.8	novel	1494	5	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2611.97375348392	2	36	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTCTTTGTGATT	4890	False	NA	NA	False	NA	NA	NA	9960030	9962456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_9960280_9961544_9961692_9961923_9962050_9962144
101993	chr17	+	3350	16	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	21	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	715.079246579628	2	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATTCTGGCCGGGCAG	441	False	NA	NA	False	NA	NA	NA	56610341	56630467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622446_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
101994	chrX	-	3376	11	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	48	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	333.13276632598	1	75	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTAATTGTGCCCATGTG	NA	False	NA	NA	False	NA	NA	NA	93256209	93232315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248710_93253141_93253270_93255324_93255389_93256170
101996	chr5	+	384	1	Intergenic	novelGene_945	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	48	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197791	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
101997	chr5	-	1667	5	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-62152	-13	intron_retention	FALSE	non_canonical	0	0	junction_4	1796.50347898355	2	46	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTACACAAACAGCTTGTG	NA	False	NA	NA	False	NA	NA	NA	142954661	142888882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891202_142954639
101998	SIRV1	-	961	4	NNC	SIRV1A	novel	1561	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2492.47761608137	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10787	1000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV1_-_1319_7598_7815_10282_10367_10444
101999	chrY	-	5242	3	Intergenic	novelGene_4709	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	194	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	58559879	58553133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_-_58554963_58556398_58559394_58559461
102000	chr16	+	5699	9	ISM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	235	1855	235	-541	intron_retention	FALSE	canonical	3	317	junction_1	105.306027249156	7	129	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCCAAATTGGCTTTAGAA	NA	False	NA	NA	False	NA	NA	NA	84632246	84658812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267
102001	chr11	+	4403	24	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-7	-234	intron_retention	FALSE	canonical	3	2360	junction_7	199.672188816489	2	99	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATCCATGATGCTATATG	NA	False	NA	NA	False	NA	NA	NA	72332195	72342360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72336113_72336433_72336560_72336719_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
102002	chr17	+	2853	17	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	45	376	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	697.905479698899	1	73	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGGAAAAAAATGTTTT	544	False	NA	NA	False	NA	NA	NA	56610444	56629715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619414_56619821_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102003	chr4	+	4290	8	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	17	63381	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	168.367552257141	1	44	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAACAAGGTTGACTTGG	NA	False	NA	NA	False	NA	NA	NA	146695434	146805998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146695757_146696242_146696380_146697966_146698060_146797295_146797381_146800390_146800518_146802050_146802609_146802945_146803953_146804037
102004	chrM	+	939	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	16	0	16	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTGTAGCTTAATATTA	13	False	NA	-9	True	NA	NA	NA	85	1024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_100_1000
102005	chr2	-	1243	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-72	-171	-72	171	mono-exon	FALSE	NA	NA	NA	NA	NA	4	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCTGCACCCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824693	28823450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
102006	chr17	+	4014	2	Antisense	novelGene_ENSMUSG00000116868.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCCCACGGTCATACACCA	NA	False	NA	NA	False	NA	NA	NA	6843248	6848600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_6844504_6845841
102008	chr17	+	2855	14	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-1984	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	635.909449845154	1	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTGGTGGCGCACGTCT	4179	False	NA	NA	False	NA	NA	NA	56617678	56630482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629111_56629415
102009	chr9	-	781	5	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	21	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGTAAGTAGCTTTAGT	NA	False	NA	NA	False	NA	NA	NA	64085801	64084220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64084352_64084601_64084754_64085006_64085086_64085177_64085300_64085504
102011	chr2	+	3928	14	NNC	ENSMUSG00000027248.14	novel	2770	13	NA	NA	6	1315	intron_retention	FALSE	non_canonical	0	0	junction_13	1123.77447778595	7580	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGCTCTGTATTGCCTG	NA	False	NA	NA	False	NA	NA	NA	121244369	121270483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066_121269075_121269117
102012	chr4	+	2212	5	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	-13	-9	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	218.198733955997	1	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACAAATTTGCTTTGATT	5006	False	NA	NA	False	NA	NA	NA	145241440	145265749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145241589_145257381_145257486_145261385_145261513_145263160_145263865_145264620
102013	chr9	+	676	5	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	3677	149	-83	-149	3prime_fragment	FALSE	canonical	3	17449	junction_1	1251.29452967717	182	8	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTGTGTGACTCTTAA	NA	False	NA	NA	False	NA	NA	NA	64084333	64085799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
102014	chr4	+	2576	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	-12	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	97.3354380480203	2	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGATTCAACAAATTTGC	NA	False	NA	NA	False	NA	NA	NA	146033868	146063179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054403_146058462_146058581_146060726_146061345_146061514
102015	chr15	+	2708	3	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	20291	0	-500	0	3prime_fragment	FALSE	canonical	3	820	junction_2	59	2	28	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	3009	False	NA	NA	False	NA	NA	NA	102002498	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_102003213_102003411_102003485_102003687
102017	chr2	+	1801	2	ISM	ENSMUSG00000054766.14	ENSMUST00000147590.2	844	3	280	-1152	280	4	3prime_fragment	FALSE	canonical	3	15823	junction_1	0	1	65	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCATTCTCCTTGTTTTGT	NA	False	NA	-63	True	NA	NA	NA	29960461	29962593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_29960600_29960930
102019	chr1	+	671	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	-53	-135	-53	135	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGAGGCAGATGTGTTA	NA	False	NA	NA	False	NA	NA	NA	43228262	43228933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43228300_43228900
102020	chr13	+	3261	6	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-19	1321	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	98.7230469545992	2	119	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66261274	66271971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66264730_66264842_66267450_66267578_66267777_66267839_66269026_66269578_66269660
102021	chr11	-	1582	4	NNC	ENSMUSG00000016559.15	novel	1993	4	NA	NA	-2	-408	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6192.9084174293	1	63	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAGTATCCTATTG	NA	False	NA	NA	False	NA	NA	NA	115915332	115913194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_115914362_115914450_115914600_115914707_115914846_115915204
102022	chrM	+	683	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	-261	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATCTATCCTAATTTTA	-2	True	NA	87	True	NA	NA	NA	14144	15027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14766_14965
102023	chr19	-	712	4	Antisense	novelGene_ENSMUSG00000024661.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGCGACGCTGGAGCGGC	2186	False	NA	NA	False	NA	NA	NA	9962448	9960212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_9960347_9961543_9961690_9961921_9962050_9962144
102024	chr4	+	2420	6	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	2	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	41.3811551312913	2	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147637735	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661528_147661591_147665716_147665826_147667290_147668577_147668917
102025	chr2	-	4302	29	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTTGGGTTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	52000747	51962504	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51962656_51963166_51963264_51964256_51964340_51966093_51966186_51966988_51967118_51967202_51967298_51968340_51968533_51971237_51971329_51972674_51972814_51975036_51975189_51978657_51978773_51979530_51979696_51980178_51980295_51982051_51982115_51982289_51982390_51983509_51983606_51984605_51984675_51985833_51986012_51987925_51988045_51988373_51988519_51988864_51988965_51993444_51993724_51995436_51995650_51996912_51997013_51997649_51997769_51998449_51998601_51999201_51999288_51999362_51999418_51999935
102026	chr14	-	3178	25	Antisense	novelGene_ENSMUSG00000030662.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	67	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCGCGGCGACCGGCACCAG	NA	False	NA	NA	False	NA	NA	NA	121183516	121148588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_121148754_121154765_121154847_121157332_121157525_121159534_121159640_121160450_121160548_121160891_121160996_121163610_121163734_121163822_121163946_121165869_121165955_121166709_121166820_121170253_121170381_121170462_121170551_121170639_121170814_121172438_121172660_121173833_121173911_121175969_121176110_121176184_121176308_121176869_121176971_121178233_121178405_121179041_121179154_121179239_121179296_121180058_121180187_121181093_121181311_121181743_121181972_121183486
102027	chr7	-	1790	9	NIC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	862	junction_8	6441.19642297726	17	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394405	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126397299_126398216
102028	chr8	+	4607	14	NIC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	45	-5	intron_retention	FALSE	canonical	3	808	junction_6	93.5312497219844	1	104	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTTGTGAGGCTCACTTG	5886	False	NA	NA	False	NA	NA	NA	107330819	107396873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
102029	chr4	+	4228	5	FSM	ENSMUSG00000066007.16	ENSMUST00000168483.9	4244	5	15	1	15	-1	multi-exon	FALSE	canonical	3	31	junction_2	207.21064161862	2	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAAGGTTGACTTGGCTG	NA	False	NA	NA	False	NA	NA	NA	146093408	146135318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535
102030	chr9	+	1420	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8139.76543175236	1694	30	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082103_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084575_64084760_64085002_64085087_64085178_64085300_64085504
102031	chr3	+	3332	20	Antisense	novelGene_ENSMUSG00000002227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.223296878269436	1	78	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGAGTTGGCTGGTCTGGG	NA	False	NA	NA	False	NA	NA	NA	104702218	104725457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702565_104702649_104702765_104703011_104703099_104703175_104703300_104704077_104704156_104704283_104704483_104704596_104704702_104706701_104706924_104707012_104707110_104707259_104707366_104707590_104707748_104708000_104708150_104708271_104708450_104708713_104708876_104709747_104709910_104710107_104710246_104711447_104711705_104711789_104712029_104712218_104712424_104725251
102032	chr4	+	3069	3	Intergenic	novelGene_2075	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	20	2	56	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146370014	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146384326_146384409_146390722
102033	chr17	-	1074	2	Intergenic	novelGene_91	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	188	26	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGTTGATACATTTAT	NA	False	NA	NA	False	NA	NA	NA	23097164	23095198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_23095458_23096349
102034	chr15	+	553	1	Intergenic	novelGene_3341	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	28	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTAGATCAGGCTGGCC	4172	False	NA	NA	False	NA	NA	NA	86078972	86079525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_86079000_86079500
102036	chr4	+	2615	11	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	7	182333	multi-exon	TRUE	non_canonical	0	0	junction_1	58.2412225146416	4	59	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147390101_147390233_147393100_147393194_147409205_147409335_147413438_147413566_147415724_147415879_147416715_147417351_147417434_147418058_147600176
102037	chr4	+	2854	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	545	3	NA	NA	1918	-7	multi-exon	TRUE	non_canonical	0	0	junction_1	0.349927106111883	2	105	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTGCTTTGATTGT	NA	False	NA	NA	False	NA	NA	NA	145138753	145265751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145138851_145140606_145140711_145160312_145160389_145174429_145174578_145176036_145176652_145177320_145177329_145263862_145264706_145264788
102038	chr2	-	1893	10	Antisense	novelGene_ENSMUSG00000017861.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	44	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTGATAGTGGAGTTCC	6849	False	NA	NA	False	NA	NA	NA	162925595	162910121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162910234_162914541_162914834_162916300_162916717_162917541_162917696_162919706_162919809_162921511_162921623_162922631_162922742_162924468_162924618_162925080_162925416_162925483
102039	chr14	+	2980	1	Intergenic	novelGene_575	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGATGATGGTGAGTGG	961	False	NA	NA	False	NA	NA	NA	54169630	54172610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_+_54169600_54172600
102040	chr4	+	2517	10	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	63	-1876	multi-exon	TRUE	non_canonical	0	0	junction_2	39.768776138518	3	100	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146200191	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146291416_146291510_146293441_146293573_146368115_146368234_146384315_146384431_146388486_146388614_146390758_146390920_146391665_146392489_146392824_146393429_146552609
102041	chr4	+	2848	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000085101.8	novel	545	3	NA	NA	25	-8	multi-exon	TRUE	non_canonical	0	0	junction_1	33.9429292928526	1	63	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAATTTGCTTTGATTG	NA	False	NA	NA	False	NA	NA	NA	145136860	145265750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136958_145138756_145138851_145140606_145140711_145160312_145160385_145173283_145173342_145176036_145176697_145263899_145264617_145264704
102042	chr4	+	2979	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	3044	5	NA	NA	6	1	multi-exon	FALSE	non_canonical	0	0	junction_1	34.2928563989645	1	190	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	918	False	NA	NA	False	NA	NA	NA	145237352	145351912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145241457_145241589_145257427_145257486_145261385_145261509_145263083_145263746_145263922_145264550_145308574_145308745_145350847
102043	chrM	+	1450	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	10	364	10	-364	mono-exon	FALSE	NA	NA	NA	NA	NA	3	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCACAGCCCTAATTATTT	6	True	NA	14	True	NA	NA	NA	11751	13201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11800_13200
102044	chr16	+	2080	11	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	-3	-1	intron_retention	FALSE	canonical	3	380	junction_10	675.136104796655	1	35	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6059	False	NA	NA	False	NA	NA	NA	22926513	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
102045	chr2	+	2610	12	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	456.762809850813	2	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	642	False	NA	NA	False	NA	NA	NA	26279348	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285812
102046	chr10	+	1568	3	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTTCCAGTGGCCAAGAAA	3537	False	NA	NA	False	NA	NA	NA	62675858	62715151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62676160_62700591_62700636_62713928
102047	chrX	-	1571	5	NNC	ENSMUSG00000031422.17	novel	1996	4	NA	NA	592	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.93663567276	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAATGTGTGGTGTT	NA	False	NA	NA	False	NA	NA	NA	135640640	135633699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135633856_135633949_135635015_135635064_135635251_135636294_135636372_135640553
102048	chr5	-	1339	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1275	352	342	34	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	4	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATGAAATAAGTGGTTACA	4003	False	NA	NA	False	NA	NA	NA	142891234	142889221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
102049	chr17	+	1313	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	42	7	42	-7	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	9	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3078	False	NA	NA	False	NA	NA	NA	35816956	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
102050	chr18	-	2838	12	NNC	ENSMUSG00000024360.9	novel	3709	11	NA	NA	73	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	431.989286674627	1	115	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATTTTGTGTGCTTGAG	NA	False	NA	NA	False	NA	NA	NA	35064987	35035840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_35036287_35037074_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064719_35064886
102051	chr17	+	1976	11	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	6	376	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	770.226564070599	2	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAGGAAAAAAATGTTTT	505	False	NA	NA	False	NA	NA	NA	56610405	56629715	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56627149_56627283_56627396_56627543_56629020_56629126_56629355
102052	chr10	+	1796	11	Antisense	novelGene_ENSMUSG00000025403.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTCACTGTCTGAT	NA	False	NA	NA	False	NA	NA	NA	127353202	127356851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_127353789_127353896_127354003_127354102_127354253_127354342_127354442_127354664_127354829_127354991_127355128_127355255_127355381_127355498_127355581_127355839_127356046_127356209_127356287_127356786
102053	chrM	+	895	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	249	0	-249	mono-exon	FALSE	NA	NA	NA	NA	NA	3	20	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTTAGCCCTAATACCT	-2	True	NA	87	True	NA	NA	NA	14144	15039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15000
102054	chr5	+	5202	1	Intergenic	novelGene_742	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22127	114	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAAGAATGTAGCCAAG	NA	False	NA	NA	False	NA	NA	NA	89351754	89356956	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_89351800_89357000
102055	chr5	+	3206	20	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	88	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCGTTGCGGTACACTCA	NA	False	NA	NA	False	NA	NA	NA	31314756	31337206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323358_31323702_31323733_31325041_31325156_31325343_31325446_31325643_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31330729_31330851_31331109_31331436_31331577_31331839_31336957
102056	chr9	+	1251	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	6276.93498054584	6	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084703_64085178_64085300_64085504
102057	chr5	+	335	1	Intergenic	novelGene_908	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	286	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGCGTCCGCCATGCCGGT	NA	False	NA	NA	False	NA	NA	NA	146197788	146198123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198100
102059	chr3	-	953	2	Genic_Genomic	ENSMUSG00000047676.7	novel	885	1	NA	NA	-78	50	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	53	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGTTGCTAAAAGCTGAA	NA	False	NA	NA	False	NA	NA	NA	149779257	149778244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_-_149778987_149779046
102060	chr7	-	3597	23	NNC	ENSMUSG00000003435.10	novel	3513	30	NA	NA	74	426	intron_retention	FALSE	non_canonical	0	0	junction_19	217.701744565304	2	79	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGGCTACCCAGACCCAT	NA	False	NA	NA	False	NA	NA	NA	28038057	28015782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28015867_28016208_28016315_28016410_28016539_28016640_28016926_28017161_28017247_28018163_28018290_28018379_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029084_28029998_28030071_28030794_28030955_28037776_28037861_28037966
102061	chr5	+	1270	1	NIC	ENSMUSG00000023104.10	novel	4995	11	NA	NA	-179	-103	mono-exon	FALSE	NA	NA	NA	NA	NA	1	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGCCAGATGCTGGAGAC	8798	False	NA	NA	False	NA	NA	NA	134622793	134624063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_134622800_134624100
102062	chr11	-	1437	11	NNC	ENSMUSG00000020706.14	novel	3144	21	NA	NA	-7038	-1168	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	180	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGGTCACTAGTTTTGTG	7631	False	NA	54	True	NA	NA	NA	106153943	106146856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106147038_106147670_106147744_106151676_106151747_106152008_106152107_106152246_106152535_106152729_106152857_106152941_106153133_106153227_106153331_106153407_106153514_106153618_106153708_106153832
102063	chr4	-	2332	7	Intergenic	novelGene_2132	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	42	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAAGATGAAACCGC	NA	False	NA	NA	False	NA	NA	NA	147669646	147216507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147216643_147217299_147217437_147447266_147447360_147536168_147536227_147665696_147665825_147667289_147667435_147668010
102064	chr4	+	2187	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	12	182333	multi-exon	TRUE	non_canonical	0	0	junction_1	185.593642132483	2	44	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	4122	False	NA	NA	False	NA	NA	NA	147314752	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314885_147393099_147393181_147413438_147413519_147415756_147415880_147416463_147417279_147417449_147418091_147600209
102065	chr9	+	1891	6	NNC	ENSMUSG00000007815.14	novel	2197	6	NA	NA	-38	-34	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	593.417694377241	1	90	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTCCAACTAATAGAATAAA	NA	False	NA	NA	False	NA	NA	NA	108183599	108215099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108183753_108192506_108192582_108204782_108204945_108208073_108208191_108212249_108212381_108213846
102066	chr6	+	2230	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	42	8	33	-6	multi-exon	FALSE	canonical	3	4878	junction_1	99	1	96	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAATGACTGGCACAGCT	NA	False	NA	NA	False	NA	NA	NA	117894296	117902574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
102067	chr18	-	2507	12	NNC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	1030	-2	intron_retention	FALSE	canonical	0	0	junction_1	1502.90954732413	1	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAATTATGGTCTGACA	NA	False	NA	NA	False	NA	NA	NA	64648467	64633290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633463_64634556_64634947_64636578_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396
102068	chr13	-	1738	5	NNC	ENSMUSG00000118666.1	novel	1567	4	NA	NA	-7250	964	intron_retention	FALSE	non_canonical	0	0	junction_1	30.4415423393756	1	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	1944	False	NA	NA	False	NA	NA	NA	66439215	66427985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66428546_66429455_66430404_66431569_66431631_66431830_66431958_66439173
102070	chr9	+	1377	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	14	147	-4	-147	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	14	37	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080670	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
102071	chrM	-	360	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	11	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACTGTGGCACCTCAGA	-12	True	NA	NA	False	NA	NA	NA	14942	14582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14600_14900
102072	chr11	+	2800	5	NNC	ENSMUSG00000020149.18	novel	2827	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	821.652298724953	1	173	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	NA	NA	NA	20151438	20176856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_20151653_20165629_20165703_20168812_20168917_20174298_20174499_20174647
102073	chr4	+	3480	7	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	187.738884861099	2	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	145397263	145431007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474_145427580_145427841_145427955_145428205
102074	chr8	+	3526	11	NIC	ENSMUSG00000031596.16	novel	3677	12	NA	NA	-2	3	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	2.64764045897475	5	79	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTCTGGTTGCTACACT	NA	False	NA	NA	False	NA	NA	NA	41315430	41371096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_41315595_41351973_41352366_41355535_41355702_41357482_41357617_41358541_41358765_41361092_41361233_41364031_41364135_41365516_41365723_41366999_41367167_41367956_41368066_41369374
102075	chr4	+	2909	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	39.414542656734	4	82	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147447267_147447362_147533654_147533752_147533923_147533956_147536170_147536268_147661528_147661587_147665698_147665826_147667290_147667430_147667838
102076	chr5	-	628	4	NNC	ENSMUSG00000066551.13	novel	1092	5	NA	NA	-190	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3991.2719220263	1	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCTGTGTAAGATTTGTT	9167	False	NA	NA	False	NA	NA	NA	148987447	148985454	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_148985712_148986536_148986712_148987104_148987251_148987397
102077	chr4	+	2065	6	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	2387	256533	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	85.2	1	28	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146036301	146319724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146036316_146058453_146058581_146060726_146060865_146061196_146061970_146062389_146063091_146319412
102078	chr10	+	2834	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-136	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	2452.88316401873	3	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGGCCAAGTGGAGTTC	2196	False	NA	NA	False	NA	NA	NA	81012479	81018196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017124_81017189_81017245_81017326_81017460_81017760
102080	chr13	+	2980	26	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-7	-551	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	222.191326563392	1	72	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGACAAACTGACCTCTGT	NA	False	NA	NA	False	NA	NA	NA	6598202	6629527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606749_6607822_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453
102081	chr4	+	4020	5	FSM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	-15	1	-15	-1	multi-exon	FALSE	canonical	3	18	junction_2	173.168992605489	8	78	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145397239	145431010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474
102082	chr5	-	1685	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-10	intron_retention	FALSE	non_canonical	0	0	junction_2	1650.86546998839	1	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAAACAGCTTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890048_142890338_142890538_142890991_142891232_142891318_142891448_142892406
102083	chr16	-	564	1	Intergenic	novelGene_3716	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	22	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102084	chr8	-	3882	4	Antisense	novelGene_ENSMUSG00000031770.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	229	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTTGGCGTCTTTGGGA	NA	False	NA	NA	False	NA	NA	NA	95120849	95113143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_95113366_95115982_95116059_95116143_95116222_95117343
102085	chr15	+	3112	10	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	60	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	340.131020506967	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	-34	True	NA	NA	NA	101982358	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998298_101998492_102003695
102086	chr11	+	660	1	Antisense	novelGene_ENSMUSG00000078965.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTGTGGTCATGAGCC	NA	False	NA	NA	False	NA	NA	NA	20284822	20285482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20284800_20285500
102087	chr13	+	3099	10	Antisense	novelGene_ENSMUSG00000021670.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	74	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATCCTGGATGAAAGCCAA	NA	False	NA	NA	False	NA	NA	NA	96785850	96795621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_96787142_96787517_96787675_96788365_96788522_96788602_96788742_96789162_96789341_96791328_96791432_96792059_96792519_96793068_96793266_96795090_96795269_96795380
102088	chr6	-	785	4	ISM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	47	7112	47	-8	5prime_fragment	FALSE	canonical	3	8494	junction_3	181.473597712358	1	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTCCCAGGTGACTAGTG	7	True	NA	NA	False	NA	NA	NA	7693207	7682280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_7682457_7685168_7685407_7689251_7689524_7693108
102089	chr5	+	1470	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	27	25	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCTCTCTTGCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	142889018	142891162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993
102091	chr11	+	2002	1	Antisense	novelGene_ENSMUSG00000081965.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGGTCCTGTAAGTGC	NA	False	NA	NA	False	NA	NA	NA	105055554	105057556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_105055600_105057600
102092	chr2	-	721	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11315	186	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	32	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	11426156	11413655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414107_11425886
102093	chr4	+	3103	10	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	-74	0	multi-exon	FALSE	non_canonical	0	0	junction_2	115.442572971677	10	103	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147209638	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147316807_147316901_147395016_147395147_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147596997_147597081_147597092_147599102_147599450_147667748
102094	chr6	+	2039	4	ISM	ENSMUSG00000042079.14	ENSMUST00000179224.8	391	5	350	-1689	291	-132	3prime_fragment	FALSE	canonical	3	521	junction_1	2102.13325510592	9	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGAATTGGTGAGGCCTTG	4079	False	NA	NA	False	NA	NA	NA	117884100	117902448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_117884170_117894430_117894560_117896059_117896121_117900668
102095	chr7	-	2148	3	Antisense	novelGene_ENSMUSG00000108878.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13	46	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCATTCCCTTGGGGCTCC	NA	False	NA	NA	False	NA	NA	NA	83548389	83541200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_83541682_83544735_83544969_83546955
102096	chr15	+	2713	1	Intergenic	novelGene_3205	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	124	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTAGCAGCGTCGTTCT	NA	False	NA	NA	False	NA	NA	NA	6255933	6258646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_6255900_6258600
102097	chr11	+	1296	11	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	27	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAAGGACGCGGGCTCT	NA	False	NA	NA	False	NA	NA	NA	33102514	33113072	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33104070_33105990_33106104_33106662_33106734_33106974_33107049_33109933_33109994_33110333_33110440_33110824_33110920_33111103_33111228_33111548_33111630_33112922
102098	chr6	+	1483	7	NNC	ENSMUSG00000036371.7	novel	1166	7	NA	NA	-20	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2876.17371210819	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTCACTTCATTTGTGTT	5824	False	NA	NA	False	NA	NA	NA	67243946	67261298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244394_67248181_67248305_67249140_67249213_67249847_67249923_67254744_67254923_67258629_67258806_67260886
102099	chr4	+	2329	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	3	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	1	36	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147216497	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147447267_147447311_147665698_147665826_147667290_147667431_147668006
102100	chrUn_JH584304v1	+	3030	4	Intergenic	novelGene_4686	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	174	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTACACCTCCCAGCAT	NA	False	NA	NA	False	NA	NA	NA	53140	59529	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_54875_55113_55247_55506_55704_58563
102102	chr1	-	1964	11	NNC	ENSMUSG00000041859.11	novel	3431	16	NA	NA	35	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1160.06415770853	2	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACATGTGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	20890449	20873242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873827_20876945_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884620_20884704_20888036_20888130_20890354
102103	chr13	-	3516	16	NNC	ENSMUSG00000021196.15	novel	8681	16	NA	NA	-17	1389	intron_retention	FALSE	non_canonical	0	0	junction_2	448.413271683859	7	71	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGTCTCCCGGCTGTTGC	NA	False	NA	NA	False	NA	NA	NA	6698778	6646941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6648863_6650631_6650715_6652760_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664508_6664602_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
102104	chr13	-	329	1	Intergenic	novelGene_1355	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGTTTTTATCATACT	NA	False	NA	NA	False	NA	NA	NA	45023376	45023047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_45023000_45023400
102106	chr5	-	1754	5	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1123	2	190	-2	3prime_fragment	FALSE	canonical	3	4052	junction_3	83.3351666465004	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	3851	False	NA	NA	False	NA	NA	NA	142891386	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
102107	chr9	-	1382	10	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	52	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAGACTTGTCACTTGTA	NA	False	NA	NA	False	NA	NA	NA	64085796	64080657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64080721_64082113_64082276_64082473_64082581_64082863_64083007_64083375_64083497_64084220_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
102109	chr2	-	3120	6	NNC	ENSMUSG00000078865.9	novel	531	4	NA	NA	2	1715	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	478.646675534261	87	126	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGCTATAATTTGGAAGG	2339	False	NA	NA	False	NA	NA	NA	177270001	177259281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177261611_177261700_177262087_177263143_177263288_177263479_177263607_177266761_177266817_177269922
102110	chr15	-	1508	3	ISM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	1370	2	1243	-2	3prime_fragment	FALSE	canonical	3	3388	junction_1	1016.5	4	68	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	1401	False	NA	NA	False	NA	NA	NA	98831076	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_98830444_98830572_98830722_98830853
102111	chr2	+	4074	12	NIC	ENSMUSG00000074698.11	novel	4206	13	NA	NA	3	-5	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	49.9841297127448	1	136	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCCATGCAGCCTG	NA	False	NA	NA	False	NA	NA	NA	152068798	152123767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152120888
102112	chr17	-	1602	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	724	1601	mono-exon	FALSE	NA	NA	NA	NA	NA	1	108	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCAAGTAGGAGAGGAGC	NA	False	NA	NA	False	NA	NA	NA	40158994	40157392	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157400_40159000
102113	chr4	+	3331	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	326	3	NA	NA	-17	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	36.1121863087795	5	95	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206924	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207961_146209443_146209546_146211488_146211596_146214919_146214956_146312887_146312972_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393458_146552638
102114	chr11	+	880	3	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACGTCGTCCGCCGCCCGC	1235	False	NA	NA	False	NA	NA	NA	120469048	120472393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120469740_120471077_120471222_120472348
102116	chr4	+	2147	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	2534	182334	multi-exon	TRUE	non_canonical	0	0	junction_1	180.97789920319	2	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147219028	147600525	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147219061_147337800_147337859_147413438_147413566_147415724_147415863_147416278_147417017_147417352_147418091_147600209
102117	chr4	-	557	4	NNC	ENSMUSG00000047675.16	novel	860	6	NA	NA	72	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	5836.44315201191	1	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATCTGTATGCTGTCTAGG	NA	False	NA	NA	False	NA	NA	NA	117012306	117011039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117011185_117011495_117011626_117011834_117012011_117012200
102118	chr1	-	1444	5	NNC	ENSMUSG00000025937.7	novel	4494	7	NA	NA	134	-2599	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1141.98084484811	1	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATGTGATTAATAATAAGT	NA	False	NA	NA	False	NA	NA	NA	13730636	13696152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_13697058_13708454_13708619_13717608_13717736_13720944_13721109_13730552
102119	chr6	-	2178	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	39	0	39	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	1	94	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9308	False	NA	NA	False	NA	NA	NA	128415601	128407065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
102120	chr15	+	2678	15	NNC	ENSMUSG00000022191.17	novel	4570	35	NA	NA	-3790	-2000	intron_retention	FALSE	canonical	0	0	junction_1	172.519859844646	1	84	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAACTGACAAGCAGAAG	33	False	NA	NA	False	NA	NA	NA	12833645	12883316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12834749_12837370_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251
102121	chr11	-	3952	5	NNC	ENSMUSG00000038615.18	novel	4596	5	NA	NA	-250	7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	560.391994500278	5	98	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTAAGTGCACTTTCTCCC	NA	False	NA	NA	False	NA	NA	NA	96719031	96708249	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96709895_96710418_96711343_96712076_96712236_96712929_96713146_96718023
102122	chr15	-	2546	19	NNC	ENSMUSG00000022241.7	novel	4005	19	NA	NA	9	323	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	758.108611391974	1	76	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAATTTACTACCAAAGA	1	True	NA	NA	False	NA	NA	NA	11399678	11383767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392990_11393242_11393367_11394309_11394501_11397266_11397348_11399571
102123	chr12	-	1429	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	2	-14	-2	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	45	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
102125	chr5	-	1868	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	47	5	-5	-5	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	4	38	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACAGCTTGTGGCTCTGTG	8936	False	NA	NA	False	NA	NA	NA	142892462	142888874	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
102126	chr1	-	2475	14	NNC	ENSMUSG00000015961.9	novel	2771	13	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	294.372504826169	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTGTGTTGTTTTTC	NA	False	NA	NA	False	NA	NA	NA	177624036	177590741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_177590873_177590913_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
102127	chr4	-	2037	10	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	-8511	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	810.567291058141	1	101	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTGAGTCTTTGTGGTCA	NA	False	NA	NA	False	NA	NA	NA	137482969	137469042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469991_137470490_137470616_137470945_137471031_137473645_137473839_137475069_137475140_137476859_137477004_137479862_137480088_137481242_137481354_137482404_137482512_137482940
102128	chr19	+	4137	23	NNC	ENSMUSG00000071650.7	novel	3788	24	NA	NA	3784	-6	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	266.531815507429	1	54	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAATTGGATGTCTGAAT	5701	False	NA	NA	False	NA	NA	NA	8879272	8894030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885988_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
102129	chr5	-	2584	19	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	51	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGGGAGAGATTTCCCATC	NA	False	NA	NA	False	NA	NA	NA	75815340	75770065	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75770205_75771462_75771602_75775976_75776151_75781503_75781695_75783646_75783765_75797953_75798067_75799622_75799805_75801150_75801257_75801355_75801485_75801768_75801875_75801986_75802096_75806493_75806644_75808404_75808492_75809041_75809173_75810204_75810330_75813209_75813317_75813412_75813520_75813876_75813980_75815072
102130	chr4	+	5393	6	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	100	2591	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	53.6566864426047	78	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	147216594	147267627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147216818_147219028_147219122_147249797_147249844_147260303_147260362_147261203_147261331_147262781
102131	chr4	-	6979	14	Intergenic	novelGene_2131	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	179	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATGAAACCGCGGAACT	NA	False	NA	NA	False	NA	NA	NA	147422610	147216501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147216814_147219025_147219121_147314753_147314879_147316800_147316901_147395011_147395149_147396774_147396862_147409275_147409336_147413436_147413565_147415723_147415874_147416287_147418830_147419036_147419157_147419367_147421256_147421331_147421499_147421542
102133	chr5	-	1974	3	ISM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	13919	-1	13874	1	3prime_fragment	FALSE	canonical	3	1750	junction_2	220	1	81	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTATGCTTGTCTTTCTGGC	3275	False	NA	NA	False	NA	NA	NA	134654282	134648729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_134650503_134650802_134650941_134654219
102134	chr4	-	3410	8	Antisense	novelGene_ENSMUSG00000028580.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	141	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGGGACTGGGCTGACGC	NA	False	NA	NA	False	NA	NA	NA	130471029	130390679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_130390779_130396235_130396513_130428349_130428420_130445462_130445572_130446481_130446663_130455308_130457857_130468770_130468867_130470999
102136	chr15	+	1768	8	ISM	ENSMUSG00000009585.19	ENSMUST00000175714.8	1953	9	3007	19	149	-7	3prime_fragment	FALSE	canonical	3	242	junction_4	153.844474873099	1	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GTCAAAGAAAGAAAGACAAG	NA	False	NA	NA	False	NA	NA	NA	79779610	79792100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
102137	chr6	+	3856	7	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	103	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGGCAGCAGAGCCACT	8818	False	NA	NA	False	NA	NA	NA	122704791	122714802	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122707099_122708350_122708555_122709328_122709432_122709728_122709831_122712378_122712570_122713537_122713701_122714016
102138	chr4	+	4228	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-55189	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	173.951318547718	25	42	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146038204	146135319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146093460_146093548_146094927_146095022_146102109_146102186_146126784_146126867_146129876_146130004_146131535_146132662_146132831
102139	chr9	-	1266	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACATTCTTGCCAGATGA	NA	False	NA	NA	False	NA	NA	NA	64085801	64082170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082276_64082473_64082581_64082863_64083007_64083375_64083496_64084220_64084352_64084601_64084760_64085002_64085086_64085177_64085300_64085504
102140	chr16	-	5645	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	-57	-843	-57	843	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	819	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTTAAATATTAAATGACTA	NA	False	NA	NA	False	NA	NA	NA	8610229	8506615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
102141	chr18	+	2576	1	Genic_Genomic	ENSMUSG00000097746.3	novel	NA	NA	NA	NA	29649	2099	mono-exon	FALSE	NA	NA	NA	NA	NA	4	70	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCCAAAAAATCATAAAGCAT	NA	False	NA	NA	False	NA	NA	NA	3366386	3368962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr18_+_3366400_3369000
102142	chr5	+	4512	4	Intergenic	novelGene_878	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	72	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGACCATGGGCTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	142990658	143057302	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_142991071_142991135_142991424_142991471_142995228_143057246
102143	chr3	+	848	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7430.18147069774	2	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTTAAACTTGCTTAATAA	NA	False	NA	NA	False	NA	NA	NA	137570349	137572585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571386_137571771_137571902_137572158
102145	chr11	-	3264	11	NNC	ENSMUSG00000025155.16	novel	3062	12	NA	NA	-6	-5	intron_retention	FALSE	canonical	0	0	junction_5	271.320272003402	1	104	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGAGAAGCATTTGCAGAGA	NA	False	NA	NA	False	NA	NA	NA	120687209	120680036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682767_120682852_120682954_120683180_120683326_120683516_120684773_120685093_120685145_120685728_120685838_120686302
102146	chr12	-	2452	4	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-17	-2	intron_retention	FALSE	canonical	3	7560	junction_2	376.74070068889	7	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111638408_111638663
102147	chr6	-	3484	1	Antisense	novelGene_ENSMUSG00000030007.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	165	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGATAAAAGGTTTGCTA	NA	False	NA	NA	False	NA	NA	NA	85433624	85430140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_85430100_85433600
102148	chr4	+	2881	6	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4859	59425	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	22.7033037243481	3	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	147394989	147477616	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147415724_147416365_147417372_147417381_147475562_147476124_147476205
102149	chr6	+	2203	15	NNC	ENSMUSG00000034269.13	novel	3334	18	NA	NA	9	1683	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_13	26.3163641183231	2	53	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCCCAAGCACCCCACAG	8089	False	NA	NA	False	NA	NA	NA	113054571	113096575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113054674_113081895_113082083_113082877_113083103_113086845_113086952_113087334_113087487_113087590_113087632_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094328_113094579_113095222_113095306_113096376
102150	chr14	+	917	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-71	-161	29	-27	mono-exon	FALSE	NA	NA	NA	NA	NA	7	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAGAACTCAA	NA	False	NA	NA	False	NA	NA	NA	46321513	46322430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
102152	chr4	-	3155	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	15	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	522.352656332726	1	90	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAAAAAGGGGGTTTGA	NA	False	NA	NA	False	NA	NA	NA	135080498	135048414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065387_135067813_135067934_135068157_135068335_135069676_135069885_135071174_135071291_135071816_135071981_135073626_135073757_135074045_135074169_135074425_135074516_135080407
102153	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	60	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
102154	chr17	-	674	3	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-672	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6102.5	2	29	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAGATGCAGTTTTATA	NA	False	NA	21	True	NA	NA	NA	45881334	45878721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879393_45881227
102155	chr13	-	2640	21	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	6	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	383.369648642143	2	60	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTACTTGGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	6698807	6631210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685956_6686035_6698606
102156	chr1	-	2860	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	6	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	645.887903272503	2	76	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGACTTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20890478	20873237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880442_20882240_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
102157	chr15	-	2169	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	264	-311	-54	176	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	2	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCCCATGTGACTGAC	704	False	NA	NA	False	NA	NA	NA	36793817	36771636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
102158	chr5	-	2162	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	canonical	0	0	junction_3	1656.31755409402	2	109	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8921	False	NA	NA	False	NA	NA	NA	142892477	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890810_142890987_142891232_142891318_142891448_142892406
102159	chr8	-	2458	4	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTCACTTCCTACACCA	NA	False	NA	NA	False	NA	NA	NA	20043776	20030683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20030754_20035856_20036158_20039781_20039902_20041809
102161	chr5	-	2351	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	7	260	5	multi-exon	FALSE	canonical	3	916	junction_1	0	92	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCATTTGTGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	125466818	125463035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
102162	chr19	-	449	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATCAAGTCCATTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	22705266	22699753	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22699781_22704844
102163	chr10	-	4584	2	Intergenic	novelGene_3480	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	151	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTACCATGCCCTAAAGT	NA	False	NA	NA	False	NA	NA	NA	74555798	74551168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74551892_74551937
102164	chr10	+	3026	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	19	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2584.92960315256	2	75	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2200	False	NA	NA	False	NA	NA	NA	81012483	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014053_81014528_81014727_81014914_81015082_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
102165	chr13	-	2502	16	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	8	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3070.42729273956	1	38	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGAAAAAGTTCCTGTG	5134	False	NA	NA	False	NA	NA	NA	58549947	58539146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542320_58542421_58542600_58542978_58543108_58543387_58543502_58544001_58544076_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
102166	chr10	+	4232	10	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	16	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGCTTCTGAGAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	62647540	62675414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955
102167	chr3	+	3117	26	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	209.569448155021	1	61	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGTGTCTGTTCATTTG	NA	False	NA	NA	False	NA	NA	NA	54600278	54636185	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600316_54600523_54600630_54602543_54602647_54604308_54604431_54606013_54606081_54608907_54609038_54610487_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625811_54627826_54627883_54629974_54630062_54633390_54633497_54634989_54635118_54635764
102168	chr4	+	2492	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	-23	multi-exon	TRUE	canonical	0	0	junction_4	20.8461027532726	6	94	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCCAATAAAGCTGAAAGTT	910	False	NA	NA	False	NA	NA	NA	145237344	145351888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145343687_145343746_145347127_145347255_145348721_145349286_145349370_145350039_145350964
102170	chr9	+	1755	12	Antisense	novelGene_ENSMUSG00000062270.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	70	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCCCTTACAAAGCA	NA	False	NA	NA	False	NA	NA	NA	89973721	89996446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_89974452_89975786_89975867_89976398_89976581_89977173_89977258_89978553_89978659_89979428_89979514_89979915_89979942_89982494_89982576_89984351_89984440_89989287_89989356_89992178_89992215_89996256
102171	chrUn_MU069435v1	+	517	1	Intergenic	novelGene_4732	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCGTACGTAGCAGAGCA	NA	False	NA	NA	False	NA	NA	NA	0	517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_500
102172	chr8	+	3226	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2104	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	1227.42945818891	9	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAATACTTGGTGATGT	NA	False	NA	NA	False	NA	NA	NA	111760510	111782192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767358_111768124_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773642_111773687_111773742_111774543_111774658_111776330_111776538_111776976_111777152_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
102173	chr15	-	5210	1	Intergenic	novelGene_3234	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	212	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	9795	False	NA	NA	False	NA	NA	NA	22705095	22699885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699900_22705100
102174	chr1	+	1996	1	FSM	ENSMUSG00000101188.2	ENSMUST00000122226.2	1218	1	-208	-570	-208	570	mono-exon	FALSE	NA	NA	NA	NA	NA	42046	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTAAAGTGCTTAGATG	NA	False	NA	NA	False	NA	NA	NA	60742882	60744878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_60742900_60744900
102175	chrX	-	1635	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	20	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135642005	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135634482_135634619_135635251_135636294_135636372_135640553_135640644_135641958
102176	chr11	-	3709	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	33	-37	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1107.73549115633	1	152	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAGAGTGAAATAAACAGT	8169	False	NA	NA	False	NA	NA	NA	50216467	50185330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189054_50189945_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
102177	chr15	+	6609	7	ISM	ENSMUSG00000050310.10	ENSMUST00000061656.8	9312	38	79436	162	79436	-162	3prime_fragment	FALSE	canonical	3	26	junction_1	4.49691252107735	2	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCAAAATGGTTTTGCTCA	NA	False	NA	NA	False	NA	NA	NA	6817299	6829720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_6819090_6820020_6820106_6821073_6821308_6823454_6823614_6823925_6824050_6825376_6825516_6825642
102178	chr2	+	2518	11	NNC	ENSMUSG00000051329.14	novel	5684	37	NA	NA	438	488	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	243.756107615789	1	149	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGTACCCTGTGAGGT	NA	False	NA	NA	False	NA	NA	NA	90548340	90567160	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_90548440_90548531_90548631_90551542_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563559_90565767
102179	chr5	+	1179	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-70	-107	-70	107	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	96009502	96010681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010700
102180	chr18	-	2563	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	174	8	1	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	3	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649549	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
102181	chr12	-	788	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	32	-314	0	-21	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	61	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGTTGTATTTTCTCACT	NA	False	NA	NA	False	NA	NA	NA	80690574	80680816	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
102182	chr17	-	2505	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	12	3	-4	-3	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	1	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884185	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
102183	chrX	+	2895	22	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	992.869592248088	2	61	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCCCTCCTCAGATCCT	NA	False	NA	NA	False	NA	NA	NA	20529169	20548777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529371_20534687_20534767_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
102185	chr4	+	2299	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	2065	182324	multi-exon	FALSE	non_canonical	0	0	junction_1	69.3181073024935	1	104	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	6175	False	NA	NA	False	NA	NA	NA	147316805	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147316905_147393104_147393224_147413411_147413566_147415724_147415863_147416278_147417038_147417372_147418138_147600250
102186	chrX	+	3149	9	Antisense	novelGene_ENSMUSG00000035150.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAACTTGGGTCATCAA	NA	False	NA	NA	False	NA	NA	NA	93232438	93253026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93234529_93239877_93240049_93240891_93241063_93243321_93243467_93244499_93244591_93246419_93246554_93247554_93247718_93248657_93248749_93252933
102187	chr13	-	2989	2	Fusion	ENSMUSG00000045136.7_ENSMUSG00000058672.8	novel	2182	4	NA	NA	10	-19	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	77	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCATGTGTATAAAATCTAT	NA	False	NA	NA	False	NA	NA	NA	34314327	34258275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_34258615_34311677
102188	chr15	-	1254	10	NNC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	10093.1161469368	17185	28	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	3572	False	NA	NA	False	NA	NA	NA	79967553	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962063_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
102189	chr12	-	1251	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	475	2	-319	-2	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	410	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638297	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
102190	chr19	-	1539	9	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	4277	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1455.97742084141	13	68	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	8040	False	NA	NA	False	NA	NA	NA	7013058	6998069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999399_6999434_7006285_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863
102191	chr17	+	2608	16	Antisense	novelGene_ENSMUSG00000004865.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	56	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACTCGAGTGACGCCGAC	5828	False	NA	NA	False	NA	NA	NA	28807624	28841414	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_28808218_28808777_28809204_28810163_28810268_28811191_28811261_28813142_28813256_28817877_28817976_28818443_28818844_28819842_28819869_28821661_28821832_28822414_28822514_28824267_28824363_28825280_28825368_28826056_28826166_28827618_28827737_28840951_28841011_28841372
102192	chr15	-	5068	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	187	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	9795	False	NA	NA	False	NA	NA	NA	22705095	22699818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700402_22700568_22700924_22700965
102193	chrX	-	3286	25	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	-8018	-3513	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	115.786411359691	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTACATCTCTTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	59201078	59104831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154781_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962
102194	chr4	+	2739	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	19	238	1	-238	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	1	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATATCCTTAAAAGAGTA	913	False	NA	NA	False	NA	NA	NA	145237347	145265520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
102195	chr6	-	2646	4	NNC	ENSMUSG00000029752.13	novel	448	4	NA	NA	-531	585	intron_retention	FALSE	non_canonical	0	0	junction_1	4093.12711206915	2	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAAGGTGCTTATTTGAATG	NA	False	NA	NA	False	NA	NA	NA	7677916	7674583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675212_7675344_7675525_7675992_7676149_7676234
102196	chr13	+	2463	7	NNC	ENSMUSG00000113626.2	novel	419	3	NA	NA	-20915	458	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	28.4468314970617	2	112	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAGGAATGTGGTAAAAGC	NA	False	NA	NA	False	NA	NA	NA	61987714	62009947	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61987919_62005789_62005910_62006094_62006156_62007517_62008411_62008495_62008597_62008690_62009037_62009209
102197	chr2	+	2710	11	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	819	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	3545.88046188813	1	86	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGGGGGAATGGGGCGT	7475	False	NA	NA	False	NA	NA	NA	75489604	75497284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494119_75495410_75495495_75495577_75495646_75495741
102198	chr4	+	2669	7	NNC	ENSMUSG00000078503.10	novel	597	5	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	191.312789257105	12	142	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCTTTGATTGTTTCCA	923	False	NA	NA	False	NA	NA	NA	145237357	145265756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145247375_145247456_145257381_145257486_145261385_145261513_145263160_145264493_145264655_145265495_145265707
102199	chr7	-	3047	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.188852574577511	1	11	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAATTCGCGCCACACA	9273	False	NA	NA	False	NA	NA	NA	13045351	13012807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016469_13019182_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
102200	chr1	-	2360	11	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	-59	0	intron_retention	FALSE	canonical	2	335	junction_10	1859.5606577899	5	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4396	False	NA	NA	False	NA	NA	NA	55127242	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
102201	chr13	+	2976	4	Intergenic	novelGene_1403	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	109	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCTTGCAACGCAAAGGAA	NA	False	NA	NA	False	NA	NA	NA	62515616	62800999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_62517879_62602551_62603011_62604701_62604874_62800916
102202	chr10	-	2251	13	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-1	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	574.805619318392	4	81	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTGTTCTCTTTGTGG	8691	False	NA	NA	False	NA	NA	NA	128401857	128393631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394053_128394290_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
102203	chr17	-	2046	1	Genic_Genomic	ENSMUSG00000118642.2	novel	NA	NA	NA	NA	405	1726	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACTGGCAGGATCAACCA	NA	False	NA	NA	False	NA	NA	NA	40159313	40157267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_-_40157300_40159300
102204	chr5	-	2326	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	32	260	-20	multi-exon	FALSE	canonical	3	916	junction_1	0	358	21	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAAAGTTCTTGCATTCC	NA	False	NA	NA	False	NA	NA	NA	125466818	125463060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
102205	chr4	+	2505	10	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.314269680527354	1	20	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGGTTTCTTTGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	135047804	135065304	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054535_135056314_135056356_135056682_135056831_135059034_135059122_135059471_135059550_135065114
102206	chr11	-	1874	8	NNC	ENSMUSG00000000751.14	novel	2942	18	NA	NA	29168	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	557.449219797697	4	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTCTTTGACTGTAAAG	NA	False	NA	NA	False	NA	NA	NA	75203846	75191175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_75192230_75193493_75193581_75196933_75197029_75197944_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803
102207	chr4	-	4364	3	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	133	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGAATGCTGAAAAGGCG	NA	False	NA	NA	False	NA	NA	NA	147419843	147395006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147395148_147409232_147409329_147415716
102208	chrM	+	770	2	Genic_Genomic	ENSMUSG00000064357.1	novel	681	1	NA	NA	-144	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	6	True	NA	NA	False	NA	NA	NA	7782	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8479_8533
102209	chr11	-	2484	13	NNC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	-3	2	intron_retention	FALSE	non_canonical	0	0	junction_1	390.989947299018	1	100	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGAGATCTCTAGTGATG	NA	False	NA	NA	False	NA	NA	NA	120687206	120680024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120680386_120680494_120680551_120680668_120680707_120682030_120682177_120682680_120682770_120682863_120682954_120683180_120683326_120683516_120683621_120683853_120684773_120685093_120685145_120685728_120685805_120686302_120686550_120687044
102210	chr9	-	1518	1	Intergenic	novelGene_1184	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCATACCTAAACATGATA	100	False	NA	NA	False	NA	NA	NA	123957705	123956187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_-_123956200_123957700
102211	chr5	+	2190	4	NIC	ENSMUSG00000023104.10	novel	671	6	NA	NA	-37	135	intron_retention	FALSE	canonical	3	1115	junction_1	69.6387503876653	1	30	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCCTGCCGAGTGCTGGGG	7526	False	NA	NA	False	NA	NA	NA	134621521	134626944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_134622201_134623062_134624218_134625735_134625850_134626702
102212	chr13	+	5357	1	Intergenic	novelGene_1555	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	135	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATACATACACACATGC	NA	False	NA	NA	False	NA	NA	NA	113855139	113860496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113855100_113860500
102213	chr11	+	3399	22	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	1389	485	-1028	54	3prime_fragment	FALSE	canonical	3	2354	junction_8	214.44179500907	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAGCCTGAAAGCAAAAAG	NA	False	NA	NA	False	NA	NA	NA	72333569	72342109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
102215	chr15	-	2069	1	Intergenic	novelGene_3261	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	92	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAAACCCTTCAGTACTG	9795	False	NA	NA	False	NA	NA	NA	22705095	22703026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22703000_22705100
102216	chr1	+	4155	13	NIC	ENSMUSG00000026439.15	novel	2456	14	NA	NA	1	-4	intron_retention	FALSE	canonical	2	11	junction_12	98.3195964981323	1	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAACCACAAGTATAC	NA	False	NA	NA	False	NA	NA	NA	132405144	132433389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431504
102217	chr10	-	1705	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	426	110	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_11	591.279715937676	4	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTAGCTGAGATTTCT	NA	False	NA	NA	False	NA	NA	NA	127357807	127353491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127357741
102218	chrM	+	741	2	Genic_Genomic	ENSMUSG00000064357.1	novel	681	1	NA	NA	-161	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	-11	True	NA	NA	False	NA	NA	NA	7765	8607	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_8019_8119
102220	chr11	+	1236	10	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1053.90480278502	87	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279482_52280065
102221	chr4	+	2044	15	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	0.257539376818856	1	76	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGGAGCCCAGCGCCGG	NA	False	NA	NA	False	NA	NA	NA	135052403	135080501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135052589_135054399_135054533_135056687_135056831_135059034_135059122_135059471_135059546_135065109_135065392_135067814_135067934_135068157_135068349_135069682_135069797_135071176_135071291_135071809_135071978_135073624_135073765_135074057_135074172_135074429_135074515_135080406
102222	chr4	+	2680	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	280	2	NA	NA	-6758	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	6.2449979983984	1	51	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146200142	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146200273_146209380_146209546_146250678_146250737_146253158_146253297_146253962_146254062_146318609_146318655_146391452_146392628_146392797_146393416_146552596
102223	chr12	+	3595	1	Intergenic	novelGene_4413	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCCCATACATACACATA	NA	False	NA	NA	False	NA	NA	NA	78429072	78432667	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_78429100_78432700
102225	chr11	-	1553	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1252.4809601569	2	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120472446	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469638_120469942_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
102227	chr5	-	1510	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1454	2	521	-2	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	2	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	4182	False	NA	NA	False	NA	NA	NA	142891055	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
102228	chr4	-	1115	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	78	-191	78	191	mono-exon	FALSE	NA	NA	NA	NA	NA	3	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740828	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91740800
102229	chr4	+	2429	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000078497.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	3	-11	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	76	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCAACAAGTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	147216497	147669644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147447267_147447331_147595209_147595333_147596792_147597084_147599176_147599353_147667987_147668410_147668576
102230	chr17	+	4966	1	Intergenic	novelGene_242	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	168	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCAACAAGACCGTTTTCT	NA	False	NA	NA	False	NA	NA	NA	40489870	40494836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40489900_40494800
102231	chr17	+	1781	11	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1749.8143930143	2	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135298	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135509_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139251_13141013_13141211_13141408_13141620_13142104_13142298_13142416_13142578_13143146
102232	chr6	-	2739	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-34	-5	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_14	206.453407459881	1	58	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATCTAATTCTTTGTAA	3014	False	NA	NA	False	NA	NA	NA	71885768	71857631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871998_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
102233	chr4	+	2372	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000065999.14	novel	585	4	NA	NA	17	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	35.3426377173001	5	51	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	4127	False	NA	NA	False	NA	NA	NA	147314757	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314798_147533698_147533956_147534439_147534577_147578832_147578927_147639766_147639810_147665698_147665826_147667290_147667379_147668064
102234	chr5	-	1872	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	29	19	0	-19	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	16	75	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTTACCTTACACAAACAG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
102235	chr11	-	2540	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	316	5	-96	2	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	1	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3683	False	NA	NA	False	NA	NA	NA	120463763	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
102236	chr19	-	5209	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	189	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCAACAAGACCGTTTT	NA	False	NA	NA	False	NA	NA	NA	22705270	22699846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700558_22700772
102237	chr12	+	1975	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	61	-150	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2008.44460426347	1	46	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGATTATTGTATAGATG	NA	False	NA	NA	False	NA	NA	NA	24758300	24763995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758565_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
102238	chr4	+	2664	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	-11	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	82.8322853723112	1	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATTCAACAAATTTGCT	NA	False	NA	NA	False	NA	NA	NA	146033868	146063180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061381_146061549
102239	chr7	-	655	8	FSM	ENSMUSG00000074129.15	ENSMUST00000150350.9	1047	8	28	364	2	0	multi-exon	FALSE	canonical	3	11064	junction_7	2170.0381732747	43	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	44778157	44775345	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
102240	chr13	-	2623	13	NNC	ENSMUSG00000021546.19	novel	2653	15	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	3401.92714991567	1	114	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	5123	False	NA	NA	False	NA	NA	NA	58549958	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542233_58542600_58542978_58543108_58543387_58543554_58544640_58544714_58545566_58545611_58546977_58547027_58547706_58547805_58548146_58548232_58549877
102241	chr4	+	2974	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-24	0	multi-exon	FALSE	non_canonical	0	0	junction_1	73.2731874562585	1	85	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	4086	False	NA	NA	False	NA	NA	NA	147314716	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147393100_147393269_147409214_147409335_147413438_147413566_147415724_147416419_147416502
102242	chrX	-	5115	2	Intergenic	novelGene_4015	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	183	34	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAGATGGAAAGCTT	NA	False	NA	NA	False	NA	NA	NA	116231725	116226552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116227411_116227468
102243	chr1	+	5161	18	Antisense	novelGene_ENSMUSG00000098259.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	137	9	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACCGCTTTTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	162499362	162526487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162501229_162503174_162503415_162504262_162504386_162504922_162505028_162505578_162505796_162507063_162507171_162507388_162507636_162508333_162508466_162508789_162508903_162509886_162510093_162511623_162511826_162515684_162515789_162518723_162518805_162519942_162520188_162520297_162520489_162523831_162523933_162525001_162525841_162526445
102244	chr1	-	2853	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	0	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	644.891742368438	3	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGTATGTGTGTGAG	NA	False	NA	NA	False	NA	NA	NA	20890484	20873187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887553_20888023_20888130_20890354
102245	chr7	+	1566	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	-3	-38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2907.89742401128	1	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCCAAGTGTCATGCCAA	NA	False	NA	NA	False	NA	NA	NA	46495276	46505012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46496988_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
102246	chr15	-	5127	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	153	85	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACAACAAGACCGTTTT	9420	False	NA	NA	False	NA	NA	NA	22705470	22699829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704553_22704649_22704912_22705328
102247	chr2	+	1364	8	Fusion	ENSMUSG00000059005.14_ENSMUSG00000093242.4	novel	1074	10	NA	NA	-5	-4	multi-exon	FALSE	canonical	0	0	junction_2	4274.89785532583	3	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGCTGTTTGGTTTTTGT	7489	False	NA	NA	False	NA	NA	NA	75489618	75496461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_75489668_75491809_75491930_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493274_75495895
102248	chrUn_JH584304v1	-	2418	4	Intergenic	novelGene_4689	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	349.334923660502	1	34	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGTCTGCATGCTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	58971	53177	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54839_55111_55702_58563
102249	chr7	+	3750	20	Antisense	novelGene_ENSMUSG00000035401.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGACAGATACCAGAGCGC	NA	False	NA	NA	False	NA	NA	NA	98242675	98305778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_98243021_98243964_98244524_98246239_98246392_98249878_98250033_98251792_98251957_98259875_98260071_98262185_98262364_98264681_98264825_98268508_98268673_98270594_98270746_98275670_98275925_98279334_98279615_98286466_98286727_98288936_98289091_98290699_98290876_98294373_98294415_98295655_98295731_98297011_98297112_98303951_98304055_98305676
102250	chr10	-	2167	17	NIC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	93	junction_16	168.781466973569	1	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	NA	False	NA	NA	NA	116417405	116321691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385011_116417357
102251	chr17	-	1198	2	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	36	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGAAAGCCTCTTTCACC	NA	False	NA	NA	False	NA	NA	NA	56630486	56629060	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56629124_56629351
102252	chr17	+	2130	4	Antisense	novelGene_ENSMUSG00000024165.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATACCTTCTTCTGGACT	2129	False	NA	NA	False	NA	NA	NA	25161805	25175077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_25163655_25164555_25164602_25167610_25167766_25174997
102254	chr6	-	3161	9	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	2053	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	181.261551356045	1	157	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAAACCACAGCTTCTGTA	NA	False	NA	NA	False	NA	NA	NA	49085981	49062162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_49064375_49064697_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859
102255	chr15	+	5081	3	Intergenic	novelGene_3231	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	146	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22699869	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22701430_22701477_22704546_22704642
102256	chr13	-	1487	7	NNC	ENSMUSG00000034617.8	novel	2728	14	NA	NA	-3	-4024	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	173.038210295363	2	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAGACAGGTTTTCTCT	NA	False	NA	NA	False	NA	NA	NA	68730243	68716291	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_68717072_68718122_68718210_68719188_68719343_68720696_68720820_68725706_68725825_68728669_68728835_68730183
102257	chr11	+	1848	9	NNC	ENSMUSG00000020402.12	novel	891	8	NA	NA	-383	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1117.5552559046	2	34	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	4748	False	NA	NA	False	NA	NA	NA	52251303	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251427_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
102258	chr5	+	4266	4	Intergenic	novelGene_895	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	130	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGCACTTATAATAAAACAA	3160	False	NA	NA	False	NA	NA	NA	145267080	145273962	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_145267994_145268038_145268159_145270513_145271862_145272077
102259	chr1	-	3340	9	NNC	ENSMUSG00000022995.17	novel	1971	13	NA	NA	-2167	1835	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	165.817482492046	6	54	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAACTTTAAATGTAG	NA	False	NA	NA	False	NA	NA	NA	181747092	181730129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_181731969_181732621_181733463_181733951_181734010_181735862_181735942_181740871_181740929_181744753_181744813_181745822_181745881_181746002_181746149_181746889
102260	chrX	+	983	1	Antisense	novelGene_ENSMUSG00000082926.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	461	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAATTTTTAAGCCATTA	NA	False	NA	NA	False	NA	NA	NA	68648912	68649895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_68648900_68649900
102261	chr4	+	1450	6	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	73.1289272449692	1	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147394998	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724_147415933_147416344_147416799_147417782
102263	chr1	-	3497	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	-54	-412	-54	412	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	4	8	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGTCCCTTTGTCCTTC	NA	False	NA	NA	False	NA	NA	NA	20890590	20872779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
102265	chr11	-	2366	17	NNC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	0	33	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	230.667162473877	1	54	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTATTTCTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	70860788	70833968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856654_70858673_70858844_70860474
102266	chrX	+	2145	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	96	83	96	-83	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	2	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGAAAGGTTTAAATTTTC	NA	False	NA	NA	False	NA	NA	NA	12454135	12483205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
102267	chr17	+	2768	10	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	161	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCGAACGCCCCCGACC	NA	False	NA	NA	False	NA	NA	NA	45878703	45884193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45880054_45880168_45880314_45880395_45880750_45881196_45881493_45881591_45881727_45881949_45882113_45882344_45882548_45882692_45882820_45884094
102269	chr9	+	711	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	73	225	3	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400582	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
102270	chr17	+	2751	17	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	676	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	829.484928189627	2	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	2182	False	NA	NA	False	NA	NA	NA	56612082	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620249_56622203_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629701_56630253
102271	chr4	+	2634	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	9	-1908	multi-exon	FALSE	non_canonical	0	0	junction_1	40.1690870640043	2	44	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTTGGTTCACATTATAG	NA	False	NA	NA	False	NA	NA	NA	146206909	146552841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146291416_146291510_146365127_146365259_146368115_146368209_146384369_146384431_146388486_146388614_146390758_146390897_146391562_146392628_146392797_146393458_146552638
102272	chr4	-	2225	11	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	354	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	632.543721809015	1	55	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGGCCAGAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	137523187	137469053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469991_137471030_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523103
102273	chr16	+	2989	10	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_5	814.807467980346	1	128	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22928904_22928983_22929094_22929329_22929469_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
102274	chr9	+	2256	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	170	6	-35	-6	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	17	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTGTTGTGTTTTGTTT	1834	False	NA	NA	False	NA	NA	NA	59563820	59586652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
102275	chr4	+	3028	5	NNC	ENSMUSG00000056300.15	novel	2953	4	NA	NA	58	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	168.731110053837	3	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146599434	146623848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146599501_146613823_146613960_146616526_146616611_146619877_146620005_146621233
102276	chr4	+	2245	6	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-91	-29	multi-exon	FALSE	non_canonical	0	0	junction_2	39.154054707016	1	30	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACTCCAATAAAGCTGAAAG	NA	False	NA	NA	False	NA	NA	NA	147209621	147669626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147545579_147545672_147665698_147665826_147667290_147667330_147667896
102277	chr13	-	3659	6	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7261	299	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	46.3827554162105	1	167	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	1333	False	NA	NA	False	NA	NA	NA	67010196	66997415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66999198_66999284_66999712_66999789_67000944_67002549_67002611_67002809_67002937_67010088
102278	chrX	+	3205	6	Antisense	novelGene_ENSMUSG00000085396.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	138	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGACCAAAGCTCTCCC	NA	False	NA	NA	False	NA	NA	NA	49651998	49660097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_49653842_49655630_49655987_49656416_49656577_49658180_49658550_49659015_49659172_49659776
102279	chr16	+	1875	10	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	815.928343501067	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6078	False	NA	NA	False	NA	NA	NA	22926532	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22927998_22928726_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22931824
102280	chr9	-	5259	9	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	2	-6	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_6	497.443950988451	1	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTATCTTAAGATTTTAT	NA	False	NA	NA	False	NA	NA	NA	96993084	96957623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96972228_96975129_96975231_96979155_96979234_96981134_96981219_96982127_96982293_96992963
102281	chr4	+	2255	9	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	454	2	NA	NA	-85	-7	multi-exon	TRUE	non_canonical	0	0	junction_1	111.452273978596	1	55	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAAGTTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147209627	147669648	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147217303_147217441_147219028_147219126_147393103_147393144_147595209_147595337_147596801_147596997_147597081_147597092_147599102_147599185_147668238
102283	chr8	+	4150	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-108	-765	multi-exon	FALSE	canonical	3	906	junction_2	214.058403245469	3	116	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAGGTGTGGCACCAT	NA	False	NA	NA	False	NA	NA	NA	19834653	20045123	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
102284	chrX	-	1238	10	NNC	ENSMUSG00000031299.11	novel	2848	11	NA	NA	-13	-1432	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	662.274830125141	2	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTGTATTTGGTGTAT	NA	False	NA	NA	False	NA	NA	NA	158921318	158906636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910355_158910568_158910725_158911461_158911554_158912405_158912498_158913104_158913232_158915064_158915217_158921251
102285	chr7	-	3718	23	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	-3	intron_retention	FALSE	non_canonical	0	0	junction_3	1307.46120148494	253	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGTTGTACATGACT	NA	False	NA	NA	False	NA	NA	NA	110682213	110671141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671965_110673035_110673158_110673244_110673320_110673387_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
102286	chr15	-	4313	28	Antisense	novelGene_ENSMUSG00002076923.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	66	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGCCGTCCAGGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	74459006	74400921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_74401794_74410149_74410309_74411049_74411168_74411560_74411719_74412242_74412407_74412663_74412836_74413370_74413541_74413634_74413737_74415101_74415211_74415355_74415549_74416122_74416192_74416790_74416902_74419467_74419610_74420117_74420195_74420378_74420484_74421862_74421906_74435807_74435950_74441716_74441820_74443259_74443363_74443921_74444074_74444654_74444726_74445950_74446015_74447682_74447773_74449242_74449343_74452413_74452584_74454738_74454836_74456225_74456279_74458602
102287	chr13	-	2851	3	Antisense	novelGene_ENSMUSG00000074868.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	81	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTATGTGTTCTTTTATGA	NA	False	NA	NA	False	NA	NA	NA	62199495	61892264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_61892682_62008097_62008181_62197144
102288	chr7	-	547	6	NNC	ENSMUSG00000074129.15	novel	1047	8	NA	NA	-292	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	6627.5458504638	2	24	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGGCCTGCCCTTC	NA	False	NA	NA	False	NA	NA	NA	44776703	44775344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776421_44776517_44776632
102289	chr15	+	1980	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	-3	5	-3	-5	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	5419	47	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCAAACTGGCATCTGGT	NA	False	NA	NA	False	NA	NA	NA	98927768	98935986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
102290	chr18	+	2498	16	Antisense	novelGene_ENSMUSG00000065904.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	38	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGACGCGCGGCCGCGGCT	NA	False	NA	NA	False	NA	NA	NA	35070687	35087266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_35071432_35072020_35072078_35072394_35072493_35073250_35073368_35073893_35073996_35074915_35075144_35076126_35076347_35079004_35079090_35079548_35079712_35080963_35081070_35081157_35081233_35082069_35082195_35084276_35084461_35085449_35085539_35085729_35085787_35087218
102291	chr7	-	1383	8	NIC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	7080.45531223603	14	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398355	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396508_126396721_126396815_126396949_126398216
102292	chr15	+	5090	3	Antisense	novelGene_ENSMUSG00000060429.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	55735055	55740287	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_55735293_55735354_55735805_55735884
102294	chr4	+	2923	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	-96	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	29.2264862752949	6	50	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTAATACAACCCTCAAAA	NA	False	NA	NA	False	NA	NA	NA	146033868	146063095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146035050_146035222_146036265_146036397_146054375_146054480_146060726
102295	chr3	+	2442	2	Genic_Genomic	ENSMUSG00000095661.2	novel	2798	1	NA	NA	-46	-6	multi-exon	FALSE	canonical	0	0	junction_1	0	3	35	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	12920849	12923687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_12922875_12923270
102297	chr11	-	6259	18	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	23	90	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGGGCTCAGAAGACAGT	NA	False	NA	NA	False	NA	NA	NA	72342028	72332197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72332598_72333223_72333308_72333393_72333468_72333568_72336099_72336426_72336556_72336715_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340003_72340077_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
102298	chrX	+	1199	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	38	3	35	-3	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	4	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTTTTGTTCGTTGTTTG	NA	False	NA	NA	False	NA	NA	NA	36059341	36062457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
102299	chr4	+	4348	6	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-55196	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	39.3425977789978	2	64	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146038197	146135325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146093460_146093548_146094927_146095022_146126784_146126867_146129863_146130004_146131535
102300	chr7	-	1395	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-11	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	7080.45531223603	4	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACAACTATTTAAGGGG	NA	False	NA	NA	False	NA	NA	NA	126398353	126394427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395936_126396482_126396721_126396815_126396949_126398216
102301	chr16	-	462	1	Intergenic	novelGene_3837	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	68	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGTAAGAAGCCCGGCTC	NA	False	NA	NA	False	NA	NA	NA	57212039	57211577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211600_57212000
102302	chr5	+	3699	19	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-141	intron_retention	FALSE	non_canonical	0	0	junction_3	817.090018765027	2	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATATCTTTATTTTACGT	NA	False	NA	NA	False	NA	NA	NA	108208601	108255994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217027_108217230_108217533_108217628_108220500_108220656_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251873_108251992_108252131_108252185_108252291_108252397_108254453
102303	chr19	+	2598	13	NNC	ENSMUSG00000015176.12	novel	3634	13	NA	NA	-8	72	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	263.476899156053	1	85	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACATGGTAATAATTTTC	129	False	NA	NA	False	NA	NA	NA	46064293	46072972	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072024_46072193_46072283_46072450
102304	chr17	-	2536	4	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-15	-31	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4494.79721455818	2	97	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGAGCCAAAAATAAATGGG	NA	False	NA	NA	False	NA	NA	NA	36149124	36144843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146932_36147054_36147158_36147519_36147629_36148888
102305	chr4	-	3909	9	NNC	ENSMUSG00000086046.2	novel	1069	3	NA	NA	-174683	17042	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3	116	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAATGGCGGAAATTCC	130	False	NA	NA	False	NA	NA	NA	146806013	146586453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146586607_146597239_146597333_146603532_146603613_146797296_146797373_146800388_146800516_146802048_146803091_146803173_146803285_146803450_146804226_146804561
102306	chr19	+	861	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	63	5	5	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	2	49	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTTTTCTTTGTGATTG	4932	False	NA	NA	False	NA	NA	NA	9960072	9962457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
102307	chr4	+	2497	10	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	222.325087303355	5	88	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTCAAATGCTTGTG	683	False	NA	NA	False	NA	NA	NA	118966014	118994527	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990454_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
102308	chrX	+	3406	1	FSM	ENSMUSG00000079297.5	ENSMUST00000112099.2	1350	1	98	-2154	98	2154	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32943221	32946627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_32943200_32946600
102309	chrX	-	4525	2	Intergenic	novelGene_4032	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	139	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATTAAAACAGAAATTAGTG	NA	False	NA	NA	False	NA	NA	NA	116231724	116227161	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116229708_116229745
102310	chr3	+	2828	2	Intergenic	novelGene_3074	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	26	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTACCCAGCTCCTCACT	1684	False	NA	NA	False	NA	NA	NA	7628607	7860749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_7630011_7859324
102311	chr4	-	1185	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	2	-185	2	185	mono-exon	FALSE	NA	NA	NA	NA	NA	4	69	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	91740904	91739719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91740900
102312	chrX	+	2198	13	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-46	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	1047.41860927499	1	48	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGCCTTTTCATTTTC	NA	False	NA	NA	False	NA	NA	NA	100473294	100492182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199_100491874_100492088
102314	chr12	+	1684	12	NNC	ENSMUSG00000021115.16	novel	1509	13	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_6	381.700458041933	1	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	NA	NA	NA	105976626	106041459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_105976969_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022247_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
102315	chr5	+	2294	16	NNC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	0	35	intron_retention	FALSE	non_canonical	0	0	junction_4	724.361162220431	1	45	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGACTAGACTTCATTG	NA	False	NA	NA	False	NA	NA	NA	108213581	108255371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252300_108254797
102316	chr13	+	2453	3	NIC	ENSMUSG00000074867.5	novel	449	4	NA	NA	-21	1105	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	10	1	83	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAGCTAATATCTATCCT	NA	False	NA	NA	False	NA	NA	NA	62367348	62385063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr13_+_62367452_62381382_62381444_62382774
102317	chr19	+	987	7	NNC	ENSMUSG00000071646.10	novel	3135	18	NA	NA	7	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	426.450628899629	4	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCCTCCAGGCTCAGCTA	3476	False	NA	NA	False	NA	NA	NA	8919245	8929658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923376_8923434_8923635_8923678_8929551
102318	chr18	-	4060	12	Antisense	novelGene_ENSMUSG00000024576.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	51	44	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCGCCATCTTGTTACTC	2964	False	NA	NA	False	NA	NA	NA	61723388	61688429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61688548_61688830_61688946_61689571_61689680_61701333_61701459_61702531_61702632_61704942_61705031_61708481_61708619_61709575_61709655_61710246_61710324_61711736_61711837_61713401_61713521_61720494
102319	chr4	-	2472	2	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	90	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGAGGAGAGCTTGCCT	NA	False	NA	NA	False	NA	NA	NA	145178231	145173064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145173339_145176033
102320	chrX	+	2452	13	ISM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	1429	10	737	-10	3prime_fragment	FALSE	canonical	3	1536	junction_7	514.264496365656	2	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTCCTATTTTGAATTT	NA	False	NA	NA	False	NA	NA	NA	74140888	74153373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_+_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
102321	chr17	+	3440	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	577.728225330691	2	77	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	485	False	NA	NA	False	NA	NA	NA	56610385	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619938_56620091_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102322	chr17	-	1660	4	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-14	797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4503.49930609521	1	67	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTCTCCTTTCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	36149123	36145699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146932_36147081_36147166_36147519_36147629_36148888
102323	chr4	+	4218	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-13	-1905	multi-exon	TRUE	non_canonical	0	0	junction_1	16.961307449994	7	194	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTCACATTATAGGAT	NA	False	NA	NA	False	NA	NA	NA	146206928	146552844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207409_146223927_146224175_146231762_146231916_146291416_146291510_146365127_146365259_146368115_146368239_146384286_146384431_146388486_146388707_146390451_146390904_146391318_146392124_146392292_146393401_146552582
102324	chr3	-	4992	1	Intergenic	novelGene_3127	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	165	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACTATGTAATATGGCCT	NA	False	NA	NA	False	NA	NA	NA	60402284	60397292	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_60397300_60402300
102325	chr18	+	2037	10	NNC	ENSMUSG00000024576.15	novel	4083	10	NA	NA	-7	-169	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	812.780276444857	1	58	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCTTACCTGTGCTAGAAA	421	False	NA	NA	False	NA	NA	NA	61688337	61721084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702626_61708477_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
102326	chr2	+	2720	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	3	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGTGGATGCCCCTAGG	656	False	NA	NA	False	NA	NA	NA	26279362	26287131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285517_26285916
102327	chr5	-	1775	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-2	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	3	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142891105_142891232_142891318_142891448_142892406
102328	chr11	+	1787	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1151.33076507676	300	72	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276565_52279233
102329	chr9	+	5054	28	NNC	ENSMUSG00000032216.16	novel	4034	9	NA	NA	-344	-298	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	907.857666067834	2	158	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTACTTTTTCTCTAATC	NA	False	NA	NA	False	NA	NA	NA	72569283	72656836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569434_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625497_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638280_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
102330	chr5	-	846	6	Antisense	novelGene_ENSMUSG00000029614.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGTATCAGGCGCTT	NA	False	NA	NA	False	NA	NA	NA	121346984	121343501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_121343725_121343814_121343926_121344739_121344872_121345207_121345256_121346447_121346637_121346841
102331	chr17	+	2201	7	Antisense	novelGene_ENSMUSG00000024045.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAGGAAAAACAAAAACACA	7846	False	NA	NA	False	NA	NA	NA	32529579	32536853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_32529645_32529925_32530070_32531257_32531350_32533086_32533118_32534415_32534463_32534628_32534758_32535160
102332	chr3	-	158	1	Antisense	novelGene_ENSMUSG00000032902.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	2	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAGGATATGAAGTAGAAA	NA	False	NA	NA	False	NA	NA	NA	104556730	104556572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_104556600_104556700
102333	chr5	-	1309	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	3	1526	3	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	29	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTTGTCCTTTTCATA	6767	False	NA	NA	False	NA	NA	NA	148989847	148985037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
102334	chr14	-	2442	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-26	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1725.1813288127	2	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCAGCTAAGTGGCTATT	NA	False	NA	NA	False	NA	NA	NA	36857255	36842789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36843040_36843090_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
102335	chr1	+	2693	14	Antisense	novelGene_ENSMUSG00000040225.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	136	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAACCGCTTTTGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	162505713	162526487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_162505793_162507063_162507171_162507388_162507628_162508331_162508461_162508780_162508896_162509877_162510093_162511620_162511825_162515684_162515784_162518704_162518805_162519943_162520196_162520305_162520493_162523845_162523933_162525002_162525841_162526445
102336	chrX	-	3524	1	Intergenic	novelGene_4033	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	172	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATAGGTCCATGTG	NA	False	NA	NA	False	NA	NA	NA	116230727	116227203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116227200_116230700
102337	chr17	+	4977	14	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	40	372	intron_retention	FALSE	non_canonical	0	0	junction_5	755.035725476326	3	187	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CCAAGAGAAGGAAAAAAATG	539	False	NA	NA	False	NA	NA	NA	56610439	56629711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619421_56619803_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102338	chr4	+	3142	8	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-31292	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	12.9473029261397	2	120	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147545581	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147545711_147547363_147547457_147578832_147578921_147591991_147592098_147596801_147597940_147598027_147598276_147599031_147599868_147600017
102339	chr7	+	1257	9	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2251	-18046	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	6	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGGGAGGCGGGGCCCCG	NA	False	NA	NA	False	NA	NA	NA	126394588	126398355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505_126396720_126396814_126396953_126398220
102340	chr16	-	564	1	Intergenic	novelGene_3717	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102341	chr1	+	3552	26	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	8	-15	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	279.374054629273	1	96	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAATTTCTGAGAGCCTC	3075	False	NA	NA	False	NA	NA	NA	171910406	171949877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171910517_171915118_171915233_171916669_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940988_171946785_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
102342	chr2	-	2873	21	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-4730	-227	intron_retention	FALSE	non_canonical	0	0	junction_3	107.354215101225	2	66	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCAAGAAGTTGAAGAAG	NA	False	NA	NA	False	NA	NA	NA	103578432	103552232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556017_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574759_103578323
102343	chr3	+	488	1	Intergenic	novelGene_3069	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAGATGCAGAAAAAGCATTT	NA	False	NA	NA	False	NA	NA	NA	5925398	5925886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_5925400_5925900
102345	chr14	+	1546	11	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	36	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	703.754680268629	2	67	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAATACTCTGCAGTTTC	NA	False	NA	NA	False	NA	NA	NA	21881669	21895941	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888543_21888611_21888687_21890486_21890638_21893949_21894008_21895213
102346	chr5	-	1993	4	NIC	ENSMUSG00000029580.15	novel	1242	5	NA	NA	0	-50	intron_retention	FALSE	canonical	3	4070	junction_3	87.335877825528	4	29	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAAATGTGGCTGAGGACT	8921	False	NA	NA	False	NA	NA	NA	142892477	142889305	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_142889697_142889821_142890004_142890098_142891448_142892406
102347	chr15	-	1716	12	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	-1	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	1761.79252725482	85	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601951	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746_31601800_31601853
102348	chr4	+	1779	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	82.8322853723112	10	36	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033868	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061717_146062784
102350	chr4	+	2202	6	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	15	1909	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	48.245207015827	3	67	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145136850	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173065_145173196_145173286_145173342_145176036_145176825_145177246
102351	chr14	-	1458	1	Intergenic	novelGene_643	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTCCCCAGCGGCCGTCC	NA	False	NA	NA	False	NA	NA	NA	118945221	118943763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr14_-_118943800_118945200
102352	chr15	-	2886	2	NNC	ENSMUSG00000023004.9	novel	526	2	NA	NA	12	-11	intron_retention	FALSE	non_canonical	0	0	junction_1	0	74	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGAGTTTTGTTTCT	170	False	NA	NA	False	NA	NA	NA	98832307	98829316	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829987_98830091
102353	chr17	+	978	1	Intergenic	novelGene_167	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	43	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTCGCCCCCTGACCGCCT	NA	False	NA	NA	False	NA	NA	NA	40153887	40154865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40154900
102355	chrX	+	2051	11	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	37	29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	286.636860853589	1	64	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGAAAGTAAGGCACAAGT	NA	False	NA	NA	False	NA	NA	NA	150799460	150819237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811201_150812190_150812392_150816694_150816881_150816975_150817156_150819097
102356	SIRV5	+	1912	16	NNC	SIRV5A	novel	2029	16	NA	NA	51	-5	intron_retention	FALSE	canonical	1	19	junction_6	2928.87325016901	3	25	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATAGGTTTACCGCCAAA	NA	False	NA	NA	False	NA	NA	NA	1107	10984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3641_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
102357	chr11	+	1151	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	338	10	-167	-10	multi-exon	FALSE	canonical	3	35417	junction_1	0	8	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGCATATATGGTGTCA	NA	False	NA	NA	False	NA	NA	NA	62442334	62444029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
102358	chr7	+	3096	20	NNC	ENSMUSG00000030978.11	novel	3997	19	NA	NA	-72	244	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	296.435948339846	2	96	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTACTAAACTTGT	NA	False	NA	NA	False	NA	NA	NA	102091017	102118133	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_102091251_102091482_102091543_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
102359	chr17	-	1266	1	Antisense	novelGene_ENSMUSG00000023067.15_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	9	61	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGAAGATGGGGAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	29319696	29318430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_29318400_29319700
102360	chr4	+	3320	8	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.349927106111883	3	75	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACACTGAAAAGTAGTCAG	NA	False	NA	NA	False	NA	NA	NA	135051259	135067325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135051420_135052128_135052589_135054399_135054535_135056314_135056356_135056682_135056831_135059034_135059122_135059471_135059542_135065106
102361	chr4	+	3442	5	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	-3	2158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	88.4883466903976	3	131	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	2366	False	NA	NA	False	NA	NA	NA	147445756	147477619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147445917_147447267_147447362_147469673_147469759_147472765_147472906_147474656
102362	chr8	-	4055	3	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	121	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTTCATGCAGAAACTCT	NA	False	NA	NA	False	NA	NA	NA	20045709	20036122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20036158_20039781_20039902_20041809
102363	chr4	+	3919	9	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-38	182158	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	158.229609665827	3	92	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	146586445	146806010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603611_146797295_146797381_146800390_146800518_146802050_146803117_146803201_146803281_146803449_146804243_146804573
102364	chrM	-	1497	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	49	-1027	49	1027	mono-exon	FALSE	NA	NA	NA	NA	NA	19	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCAGTAGGAAAATTCCTG	2167	False	NA	NA	False	NA	NA	NA	14021	12524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_12500_14000
102366	chr2	-	4147	28	NNC	ENSMUSG00000027185.16	novel	3879	29	NA	NA	-17	-2	intron_retention	FALSE	non_canonical	0	0	junction_6	71.4872191134236	2	126	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACCATTTGCCTGCAGTGC	NA	False	NA	NA	False	NA	NA	NA	103591566	103551606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556585_103557060_103557234_103558147_103558239_103558358_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
102367	chr2	-	1026	1	Antisense	novelGene_ENSMUSG00000062846.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGACCGTCGCGGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	157744455	157743429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_157743400_157744500
102368	chr2	-	2451	11	Antisense	novelGene_ENSMUSG00000093242.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	83	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGGCCAGTCACCACGTG	NA	False	NA	NA	False	NA	NA	NA	75496984	75489604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_75489729_75491807_75491932_75492013_75492160_75492238_75492450_75492829_75492919_75493002_75493099_75493186_75493269_75493913_75494057_75495369_75495494_75495576_75495644_75495739
102370	chr17	+	2372	6	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	314	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	108.967151013505	3	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTCTAAGGGATGCAAC	NA	False	NA	NA	False	NA	NA	NA	17341990	17367098	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17342217_17362997_17363125_17363366_17363428_17364720_17366130_17366465_17366734_17366817
102371	chr4	+	4634	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-48	182482	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	185.303642705695	35	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146586435	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146797295_146797342_146800382_146800518_146802050_146805770_146805866
102372	chr5	-	555	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	-55	-59	-55	59	mono-exon	FALSE	NA	NA	NA	NA	NA	16	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	129205636	129205081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_129205100_129205600
102373	chr1	+	3174	23	Antisense	novelGene_ENSMUSG00000104503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	75	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGAGAGAGCAAGCAAGAG	NA	False	NA	NA	False	NA	NA	NA	84729377	84827712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84729435_84729600_84729704_84731994_84732198_84735135_84735257_84735442_84735670_84736692_84736848_84738482_84738647_84738735_84738852_84739585_84739751_84739839_84739908_84741047_84741210_84741558_84741653_84743700_84743797_84743879_84743916_84746303_84746451_84754035_84754136_84755145_84755229_84760547_84760687_84763813_84763916_84771243_84771312_84771496_84772049_84792543_84792691_84827643
102374	chr13	+	3594	25	NNC	ENSMUSG00000037851.14	novel	3789	33	NA	NA	-1983	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	673.607822300104	1	80	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATACTGTGTTGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	49857298	49887734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_49857874_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885047_49885827_49885969_49887131_49887326_49887499
102375	chr14	-	1612	11	Antisense	novelGene_ENSMUSG00000093156.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	25	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGCCCTCAAAGTGACTG	1734	False	NA	NA	False	NA	NA	NA	30295568	30286633	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_30286704_30287442_30287636_30288897_30289020_30290118_30290313_30290929_30291096_30291911_30292068_30292154_30292289_30292917_30293002_30293106_30293208_30294167_30294283_30295291
102376	chr2	-	1754	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	39	2	-32	-2	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	4	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGAGTCTTTGTTTTC	3981	False	NA	NA	False	NA	NA	NA	3513812	3489888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
102378	chr1	+	1390	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	47	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGATGGCTACAACGAT	NA	False	NA	NA	False	NA	NA	NA	24652268	24653658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652300_24653700
102379	chr17	+	1591	10	FSM	ENSMUSG00000019432.16	ENSMUST00000173731.8	2848	10	1256	1	459	-1	multi-exon	FALSE	canonical	3	2134	junction_3	141.063246475377	2	71	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACAACCGTGTCTGTGGT	NA	False	NA	NA	False	NA	NA	NA	35462101	35472655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
102380	chr5	+	3257	5	NNC	ENSMUSG00000086302.2	novel	473	2	NA	NA	-3867	6281	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.433012701892219	4	69	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCCAACTTGCTTCTT	9153	False	NA	NA	False	NA	NA	NA	114685482	114698358	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_114685840_114689551_114689777_114692031_114692109_114694218_114694370_114695911
102381	chr2	-	2742	25	Antisense	novelGene_ENSMUSG00000027433.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.199826313471363	1	106	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCATTTGGATTAGGTTT	NA	False	NA	NA	False	NA	NA	NA	146919564	146866489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_146866556_146866634_146866746_146867113_146867255_146868436_146868528_146869924_146870169_146871255_146871331_146871412_146871547_146871644_146871703_146871786_146871892_146876771_146876817_146878578_146878714_146880086_146880206_146882726_146882870_146883905_146884015_146884092_146884182_146884777_146884851_146889552_146889639_146891211_146891308_146891900_146891983_146893632_146893686_146903164_146903236_146903323_146903456_146905150_146905292_146916768_146916944_146919396
102382	chr13	-	2338	16	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2515.83804990173	5	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4778	False	NA	NA	False	NA	NA	NA	58550303	58539052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58539691_58540015_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
102384	chrX	+	1132	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-12	90	-12	-90	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCCATGGTCGCTTCCA	NA	False	NA	NA	False	NA	NA	NA	13068797	13069929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069900
102385	chr13	+	2563	12	Genic_Genomic	ENSMUSG00000095909.3_ENSMUSG00000113760.2_ENSMUSG00000113723.3	novel	902	4	NA	NA	-46864	-902	multi-exon	TRUE	non_canonical	0	0	junction_9	24.7683482368156	2	100	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAGAGAAACCTTATGAAT	NA	False	NA	NA	False	NA	NA	NA	66044985	66269380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_66045092_66085377_66085456_66090898_66091041_66092498_66092671_66093678_66093904_66094994_66095119_66103844_66103972_66104163_66104225_66105789_66105979_66106232_66106711_66188037_66188794_66269275
102386	chr2	+	1193	2	Genic_Genomic	ENSMUSG00000081434.4	novel	952	1	NA	NA	-78	363	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	9	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	152195456	152196849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_152196473_152196672
102387	chrM	+	906	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	54	-3	54	3	mono-exon	FALSE	NA	NA	NA	NA	NA	3664	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGTCTGATAAAAGAATTA	52	False	NA	-98	True	NA	NA	NA	2804	3710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_2800_3700
102388	chr10	-	5301	11	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	24844	1390	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.2403090494549	2	117	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAACAAAAAAGCCTAGAAC	NA	False	NA	NA	False	NA	NA	NA	62676239	62647010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62648797_62649080_62649192_62649356_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954
102389	chr9	+	742	1	FSM	ENSMUSG00000062933.8	ENSMUST00000075723.7	490	1	-40	-212	-40	212	mono-exon	FALSE	NA	NA	NA	NA	NA	65	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAGAAGCACC	NA	False	NA	NA	False	NA	NA	NA	96777670	96778412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_96777700_96778400
102390	SIRV5	+	1753	13	NNC	SIRV5A	novel	2029	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	2692.015244457	2	19	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1057_3353_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
102391	chr11	-	772	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	189	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGCCTT	4388	False	NA	NA	False	NA	NA	NA	20286086	20284822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285093_20285584
102392	chr18	+	1178	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	3	566	3	-566	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGGCCCAATCCAATGG	NA	False	NA	NA	False	NA	NA	NA	48179716	48180894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48180900
102393	chr15	-	4381	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	126	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAACAAGACCGTTTTCT	9968	False	NA	NA	False	NA	NA	NA	22704277	22699827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22703781_22703849
102394	chr11	+	1362	1	NIC	ENSMUSG00000086475.2	novel	375	3	NA	NA	445	-453	mono-exon	FALSE	NA	NA	NA	NA	NA	1	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGCGGCTACACCTTCT	NA	False	NA	NA	False	NA	NA	NA	41110108	41111470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_41110100_41111500
102395	chr15	-	3897	15	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	420.237250774816	2	133	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTATGATCTTCTTTCGT	NA	False	NA	NA	False	NA	NA	NA	96953833	96892700	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907970_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
102397	chr7	-	596	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	72	-43	72	5	mono-exon	FALSE	NA	NA	NA	NA	NA	2	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	92828780	92828184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92828200_92828800
102398	chr11	+	1770	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	252	0	-23	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	293	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5383	False	NA	NA	False	NA	NA	NA	52251938	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
102399	chr17	+	2057	1	Intergenic	novelGene_191	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	83	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCTGTGGTTTGGAGGGC	NA	False	NA	NA	False	NA	NA	NA	40153887	40155944	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
102400	chr4	+	3765	5	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	14	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	21.650635094611	3	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146093407	146135324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146131624_146132094_146132178_146132940_146133023
102402	chr4	+	2804	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-4	-1876	multi-exon	FALSE	non_canonical	0	0	junction_3	75.5818099809736	2	46	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206896	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146209452_146209546_146291416_146291514_146368122_146368239_146384314_146384431_146388486_146388614_146390758_146390897_146391646_146391872_146391956_146392628_146392797_146393460_146552640
102403	chr4	+	2867	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	11	-1901	multi-exon	TRUE	non_canonical	0	0	junction_2	37.9148676653717	3	55	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206911	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146207051_146207223_146207711_146207854_146291416_146291510_146365127_146365259_146368115_146368209_146384369_146384431_146388486_146388614_146390758_146390897_146391562_146392468_146392722_146393416_146552596
102404	chr16	-	500	1	Intergenic	novelGene_3819	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	10	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102405	chr7	-	1427	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	70	14	-14	-12	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	3	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTAAGGGGGAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	126398356	126394419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
102406	chr17	+	1916	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	0	-67	0	67	mono-exon	FALSE	NA	NA	NA	NA	NA	5	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCGTGCGTCCCGGGTCCC	NA	False	NA	-25	True	NA	NA	NA	40157243	40159159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159200
102407	chr5	+	1570	11	NNC	ENSMUSG00000029267.18	novel	4060	15	NA	NA	-231	106	intron_retention	FALSE	non_canonical	0	0	junction_3	769.421756905795	1	26	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGAATTTAAAATTAAAGG	NA	False	NA	NA	False	NA	NA	NA	108213308	108248796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234939_108235194_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678
102408	chr4	+	3366	5	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078497.10	novel	2800	4	NA	NA	1	2154	multi-exon	FALSE	canonical	0	0	junction_1	225.827367694883	3	83	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147390131	147477615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147390233_147447267_147447362_147469673_147469759_147472778_147472906_147474656
102409	chr13	-	2381	14	NNC	ENSMUSG00000021546.19	novel	2676	16	NA	NA	-4	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2675.23582104921	2	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	4776	False	NA	NA	False	NA	NA	NA	58550305	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542470_58543413_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
102410	chr4	-	2620	12	Fusion	ENSMUSG00000078495.11_ENSMUSG00000062518.8	novel	2729	6	NA	NA	-24	-46	multi-exon	TRUE	non_canonical	0	0	junction_1	85.7491054816847	2	82	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	9499	False	NA	NA	False	NA	NA	NA	147894269	147758004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147758369_147759100_147759473_147839072_147839540_147839708_147839979_147840554_147840693_147842158_147842286_147845677_147845736_147876648_147876725_147876890_147877047_147891499_147891641_147893153_147893289_147893953
102411	chr15	+	2764	2	Intergenic	novelGene_3252	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	1235	junction_1	0	2	20	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCTCCAAGTCGGTTCTC	NA	False	NA	NA	False	NA	NA	NA	22702006	22704864	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22704559_22704652
102412	chr4	+	2895	8	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36449	768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.349927106111883	1	121	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145136860	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136982_145138756_145138851_145159020_145159156_145160264_145160373_145162615_145162684_145173283_145173342_145174456_145174578_145176036
102413	chr15	-	5264	1	Intergenic	novelGene_3229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	215	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTTACAACAAGACCGTT	9795	False	NA	NA	False	NA	NA	NA	22705095	22699831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699800_22705100
102414	chr4	+	3670	4	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1809	1181	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.942809041582063	1	115	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTCCATCCGCTACG	2773	False	NA	NA	False	NA	NA	NA	147233141	147266217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147233216_147260318_147260362_147261203_147261359_147262819
102415	chr5	-	1607	2	NNC	ENSMUSG00000008348.10	novel	2581	2	NA	NA	1153	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATCTTCATTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	125465097	125463040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125463232_125463681
102416	chr15	+	5228	2	Intergenic	novelGene_3219	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	95	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22699817	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22704550_22704599
102417	chr17	+	1395	12	NNC	ENSMUSG00000019432.16	novel	1739	11	NA	NA	470	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	914.852704578382	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35462112	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35462199_35462336_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470286_35470336_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
102418	chr2	+	4308	6	NNC	ENSMUSG00000078887.11	novel	599	6	NA	NA	18	2766	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	83.5353817253504	1	151	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAACCCTTTCCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	175661096	175675807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349_175670411_175671567_175672721_175672973
102419	chr17	+	3680	9	ISM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	9602	37	1287	-37	intron_retention	FALSE	canonical	3	2127	junction_3	124.378894411391	2	88	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAACATATTGCAATAAAAT	7450	False	NA	NA	False	NA	NA	NA	56620949	56630449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
102420	chr13	-	5374	2	Intergenic	novelGene_1453	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	1	63	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGACTTGTAACTCTTTAG	NA	False	NA	NA	False	NA	NA	NA	66934786	66803274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66807038_66933175
102421	chr1	+	5419	2	Intergenic	novelGene_353	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	9	90	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	33446502	33452330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_33447232_33447640
102422	chr7	-	4838	9	NNC	ENSMUSG00000025507.14	novel	3653	15	NA	NA	13	-9	intron_retention	FALSE	canonical	3	6	junction_3	17.9369555666507	5	118	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTGTGTGAGACAGA	NA	False	NA	NA	False	NA	NA	NA	141023892	141018046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141019405_141019483_141019603_141019704_141019967_141020066_141020280_141020370_141020519_141020598_141021015_141021085_141021443_141021524_141022478_141022880
102423	chr5	-	377	3	NNC	ENSMUSG00000029580.15	novel	894	5	NA	NA	0	-133	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2035	3	3	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCGTGCGTGACATCAA	8918	False	NA	NA	False	NA	NA	NA	142892480	142890282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142890493_142891354_142891448_142892406
102424	chr6	-	2449	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-5	-48	at_least_one_novel_splicesite	FALSE	canonical	2	23	junction_4	209.245264172245	1	76	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAGATGGTAAAGTCATTA	3043	False	NA	NA	False	NA	NA	NA	71885739	71857674	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
102425	chr8	+	2495	15	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	241	-2102	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	927.862036718646	7	37	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAATACTTGGTGATGTCA	NA	False	NA	NA	False	NA	NA	NA	111760788	111782194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111773639_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
102426	chr15	-	1731	11	NNC	ENSMUSG00000022234.16	novel	1853	11	NA	NA	12	-70	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2795.14308041646	1	62	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACTGCTGGTCCTCTCAC	NA	False	NA	NA	False	NA	NA	NA	31601938	31591015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593767_31594242_31594393_31594490_31594673_31595790_31595990_31597556_31597722_31598145_31598192_31601746
102427	chr19	+	2287	13	NNC	ENSMUSG00000015176.12	novel	3523	13	NA	NA	0	74	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	333.122464551535	1	78	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACATGGTAATAATTTTCCC	244	False	NA	NA	False	NA	NA	NA	46064408	46072974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072691
102428	chr5	+	1499	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	27	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACATAGGAGTCCTTCTGA	NA	False	NA	NA	False	NA	NA	NA	142889018	142891191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993
102429	chr3	-	3232	27	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	486	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	335.52304174	1	47	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	8209	False	NA	NA	False	NA	NA	NA	89955120	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909124_89909176_89909585_89909781_89915602_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922801_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076
102430	chr7	-	1661	1	Intergenic	novelGene_2929	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGCTTCCCCATGATGG	9535	False	NA	NA	False	NA	NA	NA	35112391	35110730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_-_35110700_35112400
102431	chr4	+	2733	5	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	50	-232	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	222.443251190051	8	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTTAAAAGAGTATCTGGC	5069	False	NA	NA	False	NA	NA	NA	145241503	145265526	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145241589_145245504_145245556_145257381_145257486_145261385_145261513_145263160
102432	chr17	+	1899	1	Intergenic	novelGene_179	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGGTCTTTTTTTCCTCT	NA	False	NA	NA	False	NA	NA	NA	40153887	40155786	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155800
102433	chrY	+	5183	3	Intergenic	novelGene_4712	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	132	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	60513224	60519911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_+_60514733_60514780_60516644_60518099
102434	chr4	-	2986	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	50	0	14	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	1	111	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	141327185	141303372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
102435	chr1	+	3465	13	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-4	-18	intron_retention	FALSE	canonical	3	13	junction_4	98.5870667086825	1	81	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTGGATGTTTATTA	NA	False	NA	NA	False	NA	NA	NA	132405168	132433375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418216_132418324_132420290_132420401_132421552_132421673_132421758_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
102436	chrX	+	3904	1	Intergenic	novelGene_3900	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTGAAGCATTCTTAAGC	NA	False	NA	NA	False	NA	NA	NA	29524610	29528514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_29524600_29528500
102437	chrX	-	634	2	Genic_Genomic	ENSMUSG00000080877.2	novel	386	1	NA	NA	-21	1056	multi-exon	FALSE	non_canonical	0	0	junction_1	0	19	9	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTTTTTTTAAAGAGTGC	NA	False	NA	NA	False	NA	NA	NA	7905256	7903793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrX_-_7903967_7904795
102439	chr2	+	1107	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11367	63	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	28	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGCCCTCAGTTGCTGAG	NA	False	NA	NA	False	NA	NA	NA	11413667	11426094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
102440	chr7	+	6108	1	NIC	ENSMUSG00000109511.2	novel	2708	2	NA	NA	6255	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	150	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGAAACCAGACTTGCTG	28	False	NA	NA	False	NA	NA	NA	44474115	44480223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_+_44474100_44480200
102441	chr4	-	2647	7	NNC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	0	-41	intron_retention	FALSE	non_canonical	0	0	junction_1	409.190834316812	1	61	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTTGGAAATTCTTAA	NA	False	NA	NA	False	NA	NA	NA	148711222	148701360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_148703068_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
102442	chr8	-	3719	20	Intergenic	novelGene_1748	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	84	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCCAGGCCAGGGGCGG	NA	False	NA	NA	False	NA	NA	NA	111782199	111760747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760895_111763539_111763705_111766770_111766951_111767226_111767374_111768108_111768299_111768869_111769016_111769292_111769448_111769868_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776533_111776976_111777162_111779044_111779152_111779820_111779928_111780516_111780641_111780756_111780837_111781138_111781247_111781643
102443	chr14	+	2042	15	NIC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	41	-7	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	747.29468547473	1	44	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTAATCCTCAGACTCTT	NA	False	NA	NA	False	NA	NA	NA	30271208	30295574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr14_+_30271338_30279602_30279646_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
102444	chr4	-	1144	6	Antisense	novelGene_ENSMUSG00000082615.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	40	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAGATGAAACCGCGG	NA	False	NA	NA	False	NA	NA	NA	145434478	145311763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145312084_145314002_145314093_145319499_145319569_145399295_145399393_145406463_145406544_145433990
102446	chrM	+	1635	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-270	13	-270	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	76	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTGACAATATGTGAATA	19	False	NA	NA	False	NA	NA	NA	9896	11531	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_9900_11500
102447	chr8	-	3230	21	Antisense	novelGene_ENSMUSG00000110442.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	48	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCGCCCGCGCCTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	95041474	94941197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_94941258_94954288_94954422_94970280_94970398_95007896_95007961_95013115_95013244_95019293_95019368_95021645_95021736_95023073_95023216_95027385_95027527_95028695_95028852_95030225_95030394_95030787_95030881_95031866_95032778_95032899_95032973_95033227_95033273_95034466_95034584_95035529_95035656_95036219_95036332_95036924_95037011_95038160_95038288_95041207
102448	chr12	+	4952	3	Intergenic	novelGene_4385	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	117	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605040	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605243_68605475_68605531_68605577
102449	chr17	+	3276	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	750	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	594.635103796157	2	73	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	2256	False	NA	NA	False	NA	NA	NA	56612156	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624988_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102450	chrY	-	4665	2	Intergenic	novelGene_4703	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	187	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTGGTTTGGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	43728277	43723557	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrY_-_43727928_43727982
102451	chr1	-	2872	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	118	41	66	-3	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	1	60	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTTCATGCTTTGTGCTT	NA	False	NA	NA	False	NA	NA	NA	20890418	20873232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
102452	chr14	+	894	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	0	-40	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_46322253_46322291
102453	chr18	-	2591	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	99	-3	-1	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	4	102	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAACACTTTGCTGACTT	NA	False	NA	NA	False	NA	NA	NA	64649580	64632725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
102454	chr6	-	5519	12	NNC	ENSMUSG00000040669.15	novel	3530	14	NA	NA	-3	-1	intron_retention	FALSE	canonical	0	0	junction_9	394.081964877007	3	157	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGAAAGTTGGCCTCCA	9119	False	NA	NA	False	NA	NA	NA	122316574	122294709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311940_122312043_122313816_122313975_122316460
102455	chr15	+	3622	14	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-4013	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	233.983057091571	1	152	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	NA	False	NA	NA	NA	101990445	102005608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001426_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
102457	chr7	-	4319	12	NIC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	-205	-33	intron_retention	FALSE	canonical	3	1332	junction_2	82.0895499736479	29	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGGACACTGATAATAAAT	NA	False	NA	NA	False	NA	NA	NA	143128551	143111476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_143111744_143112864_143112949_143113385_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143124408_143125220_143125334_143128249
102458	chr5	+	1002	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-20	-305	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7997.5735834203	3	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATTCGGTCTCTTCGACT	NA	False	NA	NA	False	NA	NA	NA	115697575	115701481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699070_115699164_115699305_115699391_115699578_115700484_115700626_115701341
102459	chr12	-	1299	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	427	2	-367	-2	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	350	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638345	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
102461	chr4	+	2169	8	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	40	-1937	multi-exon	FALSE	non_canonical	0	0	junction_5	46.3126024193971	2	66	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGTATTCAGTAATAATAAT	NA	False	NA	NA	False	NA	NA	NA	146200168	146552812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146291416_146291510_146312913_146312972_146388486_146388614_146390758_146390897_146391646_146392407_146392742_146393454_146552634
102462	chr9	-	747	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	-12	33	-12	-33	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50256280	50255533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_50255500_50256300
102463	chr16	+	1635	8	FSM	ENSMUSG00000039903.19	ENSMUST00000037539.15	2142	8	300	207	46	-17	multi-exon	FALSE	canonical	2	6	junction_2	3.62530786869986	32	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGTGGTGTCTTGCAATCC	NA	False	NA	NA	False	NA	NA	NA	90628046	90701566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_90628321_90663142_90663340_90666453_90666578_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
102465	chrX	-	4293	2	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	2446	-174	intron_retention	FALSE	canonical	0	0	junction_1	0	1	113	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGCAGAAATACAGTTC	NA	False	NA	NA	False	NA	NA	NA	49656630	49652175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49656430_49656591
102466	SIRV5	+	1812	13	NNC	SIRV5A	novel	2029	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	3338.8030789491	1	40	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1076_3310_3405_3483_3641_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
102467	chr10	-	528	1	FSM	ENSMUSG00000096755.3	ENSMUST00000169477.4	549	1	193	-172	193	172	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	130428381	130427853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_130427900_130428400
102468	chr17	+	3197	16	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	712.968991066387	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	478	False	NA	NA	False	NA	NA	NA	56610378	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56616478_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102469	chr4	+	2321	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000082779.2_ENSMUSG00000078498.6	novel	1173	3	NA	NA	-97	182330	multi-exon	TRUE	non_canonical	0	0	junction_2	171.9175170047	3	29	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147209615	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147316807_147316848_147337800_147337859_147413438_147413566_147415724_147415863_147416528_147417303_147417387_147418091_147600209
102471	chr5	-	2857	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	-13	30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	158.23923129549	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAATCCCTCTCCTTCCA	NA	False	NA	NA	False	NA	NA	NA	31337268	31314757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317182_31317333_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
102472	chr4	+	1923	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000086147.3_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-42	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	34.1922668320062	1	45	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147056390	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056484_147216559_147216818_147217303_147217441_147578832_147578926_147637751_147637884_147639766_147639810_147665698_147665826_147667290_147667450_147668275_147668570_147669063
102473	chr1	-	2247	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	165	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1850.97436034231	3	56	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTGGTTGTGTTACC	4620	False	NA	NA	False	NA	NA	NA	55127018	55116998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122231_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
102474	chrX	+	3834	14	NNC	ENSMUSG00000031207.17	novel	3842	13	NA	NA	-373	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	417.06096215523	1	132	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGACTTCACTATGACTC	NA	False	NA	NA	False	NA	NA	NA	95139274	95212148	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_95139317_95139689_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199219_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
102475	chr3	-	2521	20	Antisense	novelGene_ENSMUSG00000028034.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	235	21	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCGAAGAATATCGCGAGA	NA	False	NA	NA	False	NA	NA	NA	151938398	151916000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_151916336_151919611_151919703_151921226_151921268_151923045_151923084_151923466_151923520_151923609_151923684_151923848_151923907_151925318_151925482_151925567_151925667_151925770_151925875_151926101_151926203_151926320_151926422_151926901_151927044_151927718_151927881_151928464_151928618_151928922_151929001_151931714_151931854_151933806_151933882_151937512_151937658_151938029
102476	chr11	-	5403	4	Intergenic	novelGene_2283	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	71893	61	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTGTCAGACATCCTGG	NA	False	NA	NA	False	NA	NA	NA	57450909	57429611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57429796_57433763_57434170_57446060_57449407_57449442
102477	chr4	-	1618	2	Antisense	novelGene_ENSMUSG00000060989.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	79	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCAGGCTGGGGGCAACC	NA	False	NA	NA	False	NA	NA	NA	12234643	12232873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_12233509_12233660
102478	chr13	+	1980	8	Antisense	novelGene_ENSMUSG00000118666.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAGAAAGGCACCCGGAAGA	NA	False	NA	NA	False	NA	NA	NA	66429046	66439279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66430291_66430335_66430403_66431568_66431635_66431836_66431957_66434368_66434509_66434590_66434662_66435255_66435422_66439173
102479	chr11	+	624	4	NNC	ENSMUSG00000035530.14	novel	1322	4	NA	NA	104	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5686.78188628878	7	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATGCTGTGTAGTCTT	4061	False	NA	NA	False	NA	NA	NA	100210814	100212354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_100210987_100211491_100211642_100211785_100211876_100212142
102480	chr2	+	1453	6	Fusion	ENSMUSG00000094108.2_ENSMUSG00000078894.10	novel	2314	6	NA	NA	32	-327	intron_retention	FALSE	canonical	0	0	junction_4	14.1336477952438	4	27	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAATTTGAAGATTGTTG	3071	False	NA	NA	False	NA	NA	NA	175968397	175999982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443_175977505_175993315_175993496_175999034
102481	chr7	-	1175	8	NNC	ENSMUSG00000030744.14	novel	1908	7	NA	NA	-63702	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	5406.63746647374	7	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGCCTGACTGGATTGTG	NA	False	NA	NA	False	NA	NA	NA	99196647	99128091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798_99132977_99196422
102482	chr8	+	3423	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	233	2094	219	-2094	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	4	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGATGTCATGCGCTCT	NA	False	NA	NA	False	NA	NA	NA	111760766	111782202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
102483	chr16	-	500	1	Intergenic	novelGene_3820	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102484	chr4	+	3748	8	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	0	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	182.969831348432	2	84	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATATTTTAACAAGGTT	NA	False	NA	NA	False	NA	NA	NA	145397254	145430994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145401107_145401211_145422720_145422806_145425813_145425941_145427474_145428318_145428486_145429401_145429575
102485	chr13	-	2988	4	Genic_Genomic	ENSMUSG00000113311.2	novel	661	2	NA	NA	-2303	4491	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGCCCGCGAGGCTCC	6693	False	NA	NA	False	NA	NA	NA	74557159	74547810	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_74547911_74553896_74554023_74554221_74554280_74554455
102486	chr13	+	3030	6	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-16	981	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	7.81280999384984	1	99	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACATAAAAGAACACATAAT	NA	False	NA	NA	False	NA	NA	NA	66261277	66271631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66264008_66264140_66264730_66264842_66267450_66267578_66268982_66269569_66269653
102487	chr7	-	2377	2	NNC	ENSMUSG00000038539.16	novel	1816	3	NA	NA	-14148	-3312	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCGCCTTTTCGCCGCC	5459	False	NA	NA	False	NA	NA	NA	44480230	44465850	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44465907_44477909
102488	chr5	+	6508	10	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	375	-14	intron_retention	TRUE	non_canonical	0	0	junction_4	2071.06451425884	11	108	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATCATTCACACT	NA	False	NA	NA	False	NA	NA	NA	129864436	129875198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129867055_129867647_129867919_129868140_129868644_129868845_129870796_129871414_129871563_129872185_129873189_129873678_129874497_129874588
102489	chrX	+	998	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	237	-25	-237	mono-exon	FALSE	NA	NA	NA	NA	NA	2	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGACCAATGACTTCAT	NA	False	NA	NA	False	NA	NA	NA	13068784	13069782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069800
102490	chr17	-	2350	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	4	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	4185.87198084222	73	13	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884193	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879178_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882859_45884119
102492	chr4	+	2484	10	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.314269680527354	275	13	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGGGCTGGATGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	135047804	135065283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054535_135056314_135056356_135056682_135056831_135059034_135059122_135059471_135059550_135065114
102493	chr4	+	2765	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4888	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	76.1162761832185	4	91	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147395018	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724_147417473_147417533
102495	chr17	+	1687	6	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	402	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	951.200798990413	1	60	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGCGCACGTCTTTA	6565	False	NA	NA	False	NA	NA	NA	56620064	56630485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56620183_56625317_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102496	chr5	-	1800	5	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	131	-2	intron_retention	FALSE	canonical	0	0	junction_4	1796.50347898355	10	47	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	9953	False	NA	NA	False	NA	NA	NA	142891445	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891295_142891394
102497	chr4	+	2413	9	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242729	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	41.6443273447897	1	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147395004	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395190_147533842_147533956_147575087_147575216_147639766_147639861_147643308_147643399_147661528_147661587_147665698_147665826_147667290_147667445_147668191
102498	chr1	-	3845	23	Antisense	novelGene_ENSMUSG00000098926.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	83	22	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGCGGGACCGCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	180428795	180396481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_180396687_180401203_180401380_180405144_180405262_180406716_180406933_180408096_180408199_180410320_180410439_180411293_180411470_180413405_180413553_180414820_180414965_180415483_180415723_180415920_180415990_180416211_180416346_180416960_180417157_180418780_180418910_180420410_180420494_180421604_180421728_180422216_180422347_180424852_180424954_180425775_180425928_180426516_180426646_180427157_180427218_180427658_180427781_180428018
102499	chr14	+	721	2	NNC	ENSMUSG00000044285.9	novel	750	2	NA	NA	-1	-26	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	36	24	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAACTCAAG	NA	False	NA	NA	False	NA	NA	NA	46321483	46322431	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_46321859_46322085
102500	chr19	-	2730	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	105	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTCTTGCAATTTGCAACA	NA	False	NA	NA	False	NA	NA	NA	22702800	22699856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700548_22700761
102501	chr3	+	2027	9	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-23	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	1123.46678160727	1	81	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACCGGCTTGACTTTGT	NA	False	NA	NA	False	NA	NA	NA	89986998	90008206	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90006963_90007011
102502	chr4	+	2424	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2800	4	NA	NA	7	182330	multi-exon	TRUE	non_canonical	0	0	junction_1	58.4541605780879	1	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147216501	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147390101_147390233_147393098_147393185_147413438_147413566_147415724_147415863_147416444_147416565_147416955_147418022_147600140
102503	chr5	+	2112	13	NNC	ENSMUSG00000029447.14	novel	2588	14	NA	NA	418	-30	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1873.5122319679	1	119	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACTTAAAGAGTGAAGCTA	NA	False	NA	NA	False	NA	NA	NA	129864479	129875182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867748_129868532_129868644_129868845_129869065_129870698_129870796_129871414_129871563_129872181_129872297_129873791_129873914_129874423_129874497_129874588
102504	chr2	+	3855	20	Antisense	novelGene_ENSMUSG00000027185.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	91	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTCCTGATGGGCCTCA	NA	False	NA	NA	False	NA	NA	NA	103554536	103580585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103554623_103555434_103556584_103557059_103557236_103558142_103558260_103558346_103558442_103560592_103560640_103560852_103560979_103561640_103562395_103562500_103562599_103563261_103563383_103564090_103564182_103564714_103564873_103565212_103565332_103570088_103570237_103573390_103573491_103573611_103573700_103574627_103574767_103578325_103578431_103578529_103578643_103580560
102505	chr10	+	3063	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	15	11	15	-11	multi-exon	FALSE	canonical	3	5618	junction_10	706.418033369635	1775	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATCCACATGTGCTCGC	2196	False	NA	NA	False	NA	NA	NA	81012479	81018321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
102506	chr8	-	444	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	-6	11	-6	-11	mono-exon	FALSE	NA	NA	NA	NA	NA	2	28	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	108166217	108165773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_108165800_108166200
102507	chr4	+	3803	9	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	3	-15	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	238.818151267863	1	97	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATTTTAACAAGGTTGA	2286	False	NA	NA	False	NA	NA	NA	147106309	147145236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147106465_147107818_147107913_147115003_147115080_147136965_147137048_147140055_147140183_147141715_147143083_147143165_147143583_147143666_147143824_147143908
102508	chr4	+	4880	15	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15_ENSMUSG00000065999.14	novel	387	3	NA	NA	-86159	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	20.7846096908265	2	190	8	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146500324	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146500544_146597241_146597335_146697966_146698060_146739355_146739414_146740256_146740384_146741834_146741984_146742397_146742741_146803533_146804059_146804141_146804621_146805042_146805189_146817994_146818512_146907043_146908365_147075346_147075565_147417808_147418020_147669269
102509	chrUn_JH584304v1	+	2471	5	Intergenic	novelGene_4638	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	19	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTATGATTGACGGCAGCG	NA	False	NA	-56	True	NA	NA	NA	52664	59725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_54478_54718_54868_55111_55249_55464_55704_59592
102510	chr11	+	4742	22	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	0	-18	intron_retention	FALSE	canonical	0	0	junction_20	580.522791988515	4	82	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCGGAAGGAAGAGGAGGC	NA	False	NA	NA	False	NA	NA	NA	72332182	72342576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333680_72334301_72334478_72334566_72334735_72334828_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72341493_72341601_72341702
102511	chr11	+	1605	6	ISM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	2128	-870	2128	-4	3prime_fragment	FALSE	canonical	3	3141	junction_3	168.597034374867	2	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	1468	False	NA	NA	False	NA	NA	NA	52267217	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
102512	chr14	-	4380	18	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-55	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	77.2720444800802	1	43	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655292	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54654045_54654228_54655113
102513	chr9	+	1268	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1504	156	1486	-156	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	8	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACAAACCCTTGTGTGA	NA	False	NA	NA	False	NA	NA	NA	64082160	64085792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
102514	chr12	-	3478	2	Intergenic	novelGene_4405	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGGGACCCGATTCCCGC	1308	False	NA	NA	False	NA	NA	NA	76272922	76269272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_76271060_76271231
102515	chr10	-	4882	10	NNC	ENSMUSG00000047146.18	novel	14369	13	NA	NA	-25195	1369	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	38.1879691480749	4	173	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATACCAAGAATGATTTCC	NA	False	NA	NA	False	NA	NA	NA	62675515	62647031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62649192_62649314_62649604_62650214_62650353_62652162_62652253_62654717_62654814_62655251_62655403_62658327_62658540_62668672_62668767_62669316_62669408_62673954
102516	chr4	+	3767	4	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1820	1179	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	39.2626483512709	2	85	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATTATGTCCATCCGCTA	2762	False	NA	NA	False	NA	NA	NA	147233130	147266215	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147233279_147260303_147260362_147261203_147261331_147262781
102517	chrX	+	2426	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	134	2	-46	-2	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	2	107	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTGTGCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	100473294	100492195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
102518	chr5	+	1893	12	NNC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	318	36	intron_retention	FALSE	canonical	0	0	junction_11	638.800127822299	1	22	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGACTAGACTTCATTGT	NA	False	NA	NA	False	NA	NA	NA	108221098	108255372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108221321_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108254860
102519	chrX	-	1649	13	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	23	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTCGGTTCAGATTTG	NA	False	NA	NA	False	NA	NA	NA	20548775	20539186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547436_20547559_20547751_20548138_20548242_20548345_20548449_20548616
102520	chr17	+	3296	16	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	-6	362	intron_retention	FALSE	non_canonical	0	0	junction_5	749.697171455841	1	32	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTTATTGTCCAAGAGAAG	493	False	NA	NA	False	NA	NA	NA	56610393	56629701	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619964_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625387_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102521	chr11	-	2351	16	NNC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	230.798228377564	1	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTTTGCTTTACAATTAAA	NA	False	NA	NA	False	NA	NA	NA	70860788	70833899	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834907_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
102523	chr4	+	3201	8	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	-7	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.3276948084663	4	99	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145311765	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145312083_145312571_145312707_145314001_145314095_145315865_145315978_145343687_145343746_145347127_145347255_145348721_145348860_145349689
102524	chr4	+	3643	9	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	2546	63389	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	154.445732783395	2	63	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGACTTGGCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	146697963	146806006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146698060_146701210_146701296_146793723_146793854_146797295_146797385_146800390_146800518_146802050_146802589_146802674_146803262_146803511_146804170_146804673
102525	chr4	+	2066	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14296	644	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	40.5490101262931	1	117	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAATCATAATTCTTCTCAA	NA	False	NA	NA	False	NA	NA	NA	145159013	145178102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145160315_145160385_145176036_145176253_145176339
102526	chr15	-	2582	5	ISM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	3659	6	1535	-6	3prime_fragment	FALSE	canonical	3	3946	junction_3	159.548386077704	2	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGGAGGCATGAGTCTCAG	3398	False	NA	NA	False	NA	NA	NA	36791123	36771019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927
102527	chr17	+	2666	12	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	201	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	879.590024710517	1	72	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATTCTGGCCGGGC	6364	False	NA	NA	False	NA	NA	NA	56619863	56630465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627538_56629020_56629126_56629223
102528	chr3	+	3918	18	NIC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	71	605	intron_retention	FALSE	canonical	2	12	junction_13	169.095088009461	1	43	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCCCAAGAATCAGGCTT	NA	False	NA	NA	False	NA	NA	NA	54600604	54624863	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624058
102530	chr7	+	1508	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	464	1	-1	-1	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	2	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTCTGCTCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	46497018	46505049	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
102531	chr2	-	3434	26	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	26	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	292.555865434279	1	92	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCCCATATGATATAC	NA	False	NA	NA	False	NA	NA	NA	127673753	127643063	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644950_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658013_127658068_127659171_127659399_127661132_127661281_127663594_127663780_127663857_127663908_127665112_127665209_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673643
102532	chr17	+	4553	19	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-5	9120	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	301.864187432562	10	68	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGCGCAGGCGCGGCCA	NA	False	NA	NA	False	NA	NA	NA	6320739	6367709	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351230_6353522_6353618_6354851_6354919_6358271_6361221_6361568_6361646_6361983_6362110_6365190_6365232_6367643
102533	chr15	-	1472	10	NIC	ENSMUSG00000060036.15	novel	1351	10	NA	NA	1	-1	combination_of_known_junctions	FALSE	canonical	3	214	junction_7	9920.80080773053	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTGGTTTTCCCACATT	3572	False	NA	NA	False	NA	NA	NA	79967553	79961996	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965413_79965815_79965985_79966590_79966784_79967524
102534	chr13	-	3813	4	NNC	ENSMUSG00000113406.2	novel	604	4	NA	NA	57	-339	at_least_one_novel_splicesite	TRUE	canonical	3	20	junction_1	34.1987654098149	1	202	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	7338	False	NA	NA	False	NA	NA	NA	65496354	65484374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_65486220_65486639_65488424_65488791_65488919_65496297
102536	chr9	+	13864	4	Antisense	novelGene_ENSMUSG00000111325.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	161	237	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGATAGGCGCTTACCTT	NA	False	NA	NA	False	NA	NA	NA	122489722	122698390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_122496003_122532792_122538622_122538673_122538943_122696904
102537	chr11	-	5475	20	NNC	ENSMUSG00000040447.16	novel	3241	13	NA	NA	2368	10293	intron_retention	FALSE	non_canonical	0	0	junction_1	0	10	87	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCAGGTCTCGGCGCCTG	NA	False	NA	NA	False	NA	NA	NA	72342576	72332170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_72332598_72333223_72333308_72333393_72334476_72334564_72334733_72334826_72335804_72336001_72336110_72336430_72336556_72336715_72336888_72336983_72337082_72337795_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339210_72339561_72339787_72339865_72340001_72340086_72340157_72341503_72341600_72341700
102538	chrUn_MU069435v1	+	542	1	Intergenic	novelGene_4735	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	36	19	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCGCTGCGATCTATTGAAA	NA	False	NA	NA	False	NA	NA	NA	0	542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_+_0_500
102540	chr19	-	4837	7	Antisense	novelGene_ENSMUSG00000093315.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	61	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAGAAAATGAGAGGACGC	NA	False	NA	NA	False	NA	NA	NA	44295297	44282588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44282842_44283338_44283624_44286476_44286604_44288041_44288252_44289648_44289883_44291438_44292157_44292287
102541	chr16	-	1140	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	-66	11	-66	7	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	1	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAACCTGGACCAGCTGAC	7067	False	NA	NA	False	NA	NA	NA	18066662	18057658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
102542	chr5	+	833	6	NNC	ENSMUSG00000029430.14	novel	2423	6	NA	NA	254	-1154	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6126.53267680831	1	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAATCATCCCTTGCTTAT	799	False	NA	NA	False	NA	NA	NA	129097589	129100233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099553_129099962
102543	chr15	+	2557	9	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	78	-234	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	271.023407660667	1	81	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGACAGCTGTTTTGTCC	NA	False	NA	-16	True	NA	NA	NA	101982376	102005374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_102003428_102003485_102003687
102544	chr14	+	1141	2	Genic_Genomic	ENSMUSG00000045799.7	novel	336	1	NA	NA	-179	687	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	60	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTAACAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	13669258	13670460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr14_+_13669476_13669536
102545	chr14	-	4039	19	NNC	ENSMUSG00000022185.20	novel	4735	19	NA	NA	9	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	168.604585266355	15	59	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATCTGACTTAGTTTTG	2639	False	NA	NA	False	NA	NA	NA	54924379	54879644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54880296_54880418_54880506_54881180_54881282_54881397_54881465_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925_54924064_54924114
102546	chr3	+	3132	26	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	-74	-4	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_5	100.830043141913	1	80	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCAGTCGTGGTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	54600451	54636179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
102547	chr13	+	3543	6	NNC	ENSMUSG00000095909.3	novel	449	3	NA	NA	-162887	1318	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	55.9013416654735	1	135	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66098406	66271968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66098504_66267450_66267578_66267777_66267839_66268283_66269335_66269586_66270268_66270442
102548	chr7	+	1501	8	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2862.36284583637	6	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495266	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498522_46499690_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
102549	chr15	-	4107	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	165	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CAGGACAGGTAAAAAAAAAA	9795	False	NA	NA	False	NA	NA	NA	22705095	22700895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
102550	chr3	-	2681	10	Antisense	novelGene_ENSMUSG00000025764.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	70	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAGCAATGAGACAGCAC	NA	False	NA	NA	False	NA	NA	NA	41568770	41535627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_41535708_41543368_41543456_41546115_41546169_41548278_41548389_41551048_41551260_41554454_41554631_41555809_41555919_41558900_41559424_41564235_41564347_41567549
102551	chr1	-	489	1	FSM	ENSMUSG00000101249.2	ENSMUST00000187117.2	492	1	70	-67	70	67	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAGATATTAGTAAAATCA	NA	False	NA	NA	False	NA	NA	NA	24655208	24654719	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24654700_24655200
102552	chr10	+	5309	10	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	79	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTGCCTGCCGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	62647009	62728637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649186_62649353_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658534_62700578_62700636_62713926_62715911_62728475
102553	chr16	+	564	1	Intergenic	novelGene_3718	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
102554	chr5	+	4145	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	2	intron_retention	FALSE	canonical	0	0	junction_4	709.4943927427	655	8	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108208601	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
102555	chr8	+	3322	4	NNC	ENSMUSG00000096401.3	novel	930	5	NA	NA	5318	-815	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	547.432999451886	2	119	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATACTGTAAACATAAATATA	NA	False	NA	NA	False	NA	NA	NA	20717420	20726451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20717497_20721120_20721241_20723149_20724256_20724431
102556	chr11	-	5175	2	Intergenic	novelGene_2288	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	147	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	57450807	57433741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433754_57445644
102557	chr4	-	4386	17	NIC	ENSMUSG00000040044.12	novel	2300	20	NA	NA	0	767	intron_retention	FALSE	canonical	2	4	junction_16	177.406742667098	2	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGGTATCCTATAAAAACT	-5	True	NA	NA	False	NA	NA	NA	34614913	34570028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34614864
102558	chr4	+	2853	4	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16641	-1791	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	367.768949205884	3	72	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTCCTGTTGTGCCTTA	1853	False	NA	NA	False	NA	NA	NA	146516838	146552958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146547961_146548020_146548860_146548988_146550437
102559	chr17	+	1190	7	NNC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-423	-303	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1485.6290194168	1	51	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAATCTATTCTTAGG	NA	False	NA	NA	False	NA	NA	NA	13226280	13234200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13226423_13226747_13226950_13227068_13227274_13227605_13227662_13229406_13229524_13232319_13232500_13233912
102560	chr7	+	2937	19	NNC	ENSMUSG00000030978.11	novel	3997	19	NA	NA	-77	179	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	355.379122892235	1	106	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCTAAAGACCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	102091012	102118068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_102091238_102092193_102092283_102095756_102095932_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106824_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
102561	chrX	+	1807	12	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-2464	-483	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1303.87965271352	1	93	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCCAGATGTAGCCATC	NA	False	NA	NA	False	NA	NA	NA	20541851	20548935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547953_20548156_20548244_20548347_20548453_20548755
102562	chr12	+	4803	2	Intergenic	novelGene_4395	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	161	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605110	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68607327_68607685
102563	chr3	+	2771	25	NNC	ENSMUSG00000027751.14	novel	3753	26	NA	NA	2009	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_18	124.159668426945	2	74	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCAGTCGTGGTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	54602542	54636179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623001_54624830_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
102564	chr11	-	477	1	Intergenic	novelGene_2504	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGGACCTGGCATGGATT	NA	False	NA	NA	False	NA	NA	NA	108902948	108902471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902500_108902900
102565	chr17	-	1649	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	81	919	-8	765	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGCAGGCACTCAATAAA	NA	False	NA	NA	False	NA	NA	NA	36149117	36145731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
102566	chr11	+	1760	10	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1393.65203691596	139	46	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274903_52276409_52276561_52278242_52278301_52279258_52279565_52279622
102567	chr11	-	3207	1	Intergenic	novelGene_2330	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	147	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGACCGTTTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	57448845	57445638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445600_57448800
102568	chr17	+	2007	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	-182	24	182	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCCTCCCCTCTCCCTCG	NA	False	NA	-1	True	NA	NA	NA	40157267	40159274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159300
102569	SIRV5	+	1852	13	NNC	SIRV5A	novel	2029	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_1	2692.015244457	3	45	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1106_3303_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
102570	chr14	+	2208	16	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	0	-559	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	326.122567279373	2	32	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTAGGTTTCTTTGTTT	1831	False	NA	NA	False	NA	NA	NA	121148635	121184271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148756_121154767_121154849_121157334_121157528_121172477_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
102571	chr16	+	4563	5	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	441	junction_1	642.747812131632	2	143	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6054	False	NA	NA	False	NA	NA	NA	22926508	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22929094_22929329_22929474_22929875_22930343_22930566
102572	chr11	+	1106	11	Antisense	novelGene_ENSMUSG00000057113.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	9	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGACGCGGGCTCTCCGCA	NA	False	NA	NA	False	NA	NA	NA	33102687	33113077	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_33102855_33103987_33104060_33106001_33106104_33106662_33106748_33106990_33107049_33109933_33109996_33110332_33110441_33110827_33110920_33111103_33111228_33111548_33111630_33112922
102573	chr5	-	2115	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-78	-96	-78	96	mono-exon	FALSE	NA	NA	NA	NA	NA	16	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833633	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
102574	chr4	+	3305	4	NNC	ENSMUSG00000078497.10	novel	572	5	NA	NA	-385577	2156	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	233.719680148867	5	71	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGACTTGGCTGTTTTCAGT	NA	False	NA	NA	False	NA	NA	NA	147060182	147477617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147060315_147469673_147469759_147472778_147472906_147474656
102575	chr7	-	5047	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	336	-1	22	1	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	1	248	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATATAGTCTTTTGAATG	NA	False	NA	NA	False	NA	NA	NA	118454885	118441443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
102576	chr7	+	2842	5	Antisense	novelGene_ENSMUSG00000108731.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	153	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACCCCCTAATCCAGCTA	NA	False	NA	NA	False	NA	NA	NA	26581763	26711318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_26582366_26583006_26583581_26583787_26583944_26584042_26584190_26709955
102577	chr11	+	4607	29	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	14	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	61.0031364198696	1	84	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771206	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788184_84788290_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
102578	chr4	-	2204	11	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	62	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	632.652827386395	1	63	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTCTGAGGCCAGAGCT	NA	False	NA	NA	False	NA	NA	NA	137523633	137469057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469969_137471015_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485889_137486044_137523552
102579	chr1	+	6943	43	Antisense	novelGene_ENSMUSG00000104503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	204	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACTTTGGGAACCACAAAC	NA	False	NA	NA	False	NA	NA	NA	84701705	84827685	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84702535_84703115_84703221_84703456_84703552_84703923_84704038_84705843_84706011_84708252_84708416_84709341_84709501_84709736_84709848_84714700_84714802_84716398_84716560_84717237_84717380_84719909_84720060_84720814_84720939_84721534_84721740_84722397_84722475_84722733_84722909_84724899_84725051_84726878_84727068_84728075_84728221_84729259_84729435_84729600_84729696_84731984_84732203_84735141_84735257_84735442_84735672_84736697_84736848_84738482_84738647_84738735_84738852_84739585_84739751_84739839_84739908_84741047_84741210_84741558_84741653_84743700_84743817_84746289_84746442_84754028_84754134_84755144_84755229_84760547_84760687_84763813_84763916_84771243_84771305_84771391_84772048_84773409_84773539_84792545_84792691_84811045_84811146_84827645
102580	chrM	-	876	1	Antisense	novelGene_ENSMUSG00000064370.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	41	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATATATCGGATTAGTC	919	False	NA	79	True	NA	NA	NA	15269	14393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_14400_15300
102581	chr11	-	890	1	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCAGCCTCTGCTGGTCA	NA	False	NA	NA	False	NA	NA	NA	62443994	62443104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62443100_62444000
102582	chr12	-	1432	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	2	-17	-2	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	798	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
102583	chr11	+	506	3	FSM	ENSMUSG00000020372.16	ENSMUST00000136703.2	766	3	-12	272	2	-272	multi-exon	FALSE	canonical	1	1907	junction_2	2329	1	28	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGTCTGCAAGTACACGG	NA	False	NA	NA	False	NA	NA	NA	48691188	48693222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_48691400_48692489_48692662_48693099
102584	chr13	+	5866	2	Antisense	novelGene_ENSMUSG00000106655.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	10	123	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTACCCAAGGTGACCCGGT	NA	False	NA	NA	False	NA	NA	NA	82836721	82944789	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_82839537_82941738
102585	chr7	+	1161	5	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	3120	6	1264	-6	3prime_fragment	FALSE	canonical	3	7665	junction_1	519.191197922307	2	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGATGGCTCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	46499674	46505044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
102586	chr2	+	1337	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	224	30	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCACGGCCCGGAGTCAG	NA	False	NA	NA	False	NA	NA	NA	154714354	154734672	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714821_154715468_154715555_154718535_154718593_154719590_154719742_154720388_154720483_154726228_154726361_154729617_154729728_154730102_154730283_154734611
102587	chr15	-	5089	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	79	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACAACAAGACCGTTTT	9877	False	NA	NA	False	NA	NA	NA	22705013	22699829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704682
102588	chr17	-	2510	15	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	66	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.235871464721	2	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAGCCTTTTGTTTGAAG	2446	False	NA	NA	False	NA	NA	NA	45744401	45702808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721794_45724070_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735425_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
102589	chr4	+	3371	12	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	36	4	multi-exon	FALSE	non_canonical	0	0	junction_2	107.749709976408	2	96	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTTGTTTTCAATTT	NA	False	NA	NA	False	NA	NA	NA	147216530	147669659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216568_147216646_147216818_147217303_147217441_147447267_147447362_147545579_147545711_147578832_147578938_147591995_147592098_147595209_147595337_147596801_147597048_147598384_147598925_147599008_147599273_147668242
102590	chr11	-	1929	1	Intergenic	novelGene_2320	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	56	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57447564	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57445600_57447600
102591	chr16	+	564	1	Intergenic	novelGene_3719	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
102592	chr6	-	1698	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	2887.72700233246	1	83	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATTGTGTAATTATAGA	NA	False	NA	NA	False	NA	NA	NA	51446825	51439744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443478_51443686_51443885_51444033_51444164_51444272_51446650
102593	chr6	+	2105	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	176	-1	167	0	multi-exon	FALSE	canonical	3	4878	junction_1	99	3	73	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCACAGCTTATGTACTC	NA	False	NA	NA	False	NA	NA	NA	117894430	117902583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
102594	chr7	+	2787	27	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	40	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	420.296507059188	1	70	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2669	False	NA	-68	True	NA	NA	NA	13012800	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012886_13014073_13014148_13016378_13016412_13020531_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032980_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
102595	chr1	-	4673	32	Antisense	novelGene_ENSMUSG00000026615.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.491340200378317	5	119	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCGGGCTGCCTTCCTGGC	NA	False	NA	NA	False	NA	NA	NA	185160552	185095372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_185095441_185099731_185099809_185101768_185101872_185103083_185103241_185105112_185105257_185106318_185106409_185110970_185111097_185111736_185111933_185113994_185114169_185117073_185117307_185118441_185118526_185119253_185119314_185126557_185126669_185128224_185128364_185129256_185129463_185130588_185130702_185131416_185131531_185133501_185133864_185139155_185139387_185139682_185139948_185142378_185142434_185143354_185143570_185143908_185143970_185145345_185145419_185145641_185145746_185146524_185146681_185147948_185148144_185150403_185150588_185152410_185152491_185156513_185156584_185160045_185160110_185160189
102596	chr4	+	2496	6	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	25	1865	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0.4	3	105	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	145136860	145178191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136958_145138756_145138851_145140606_145140724_145174460_145174578_145176036_145176245_145176328
102597	chr4	+	4781	11	Fusion	ENSMUSG00000082082.2_ENSMUSG00000078502.11	novel	1575	3	NA	NA	-36444	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0.3	1	225	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145136865	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145137026_145138756_145138855_145173200_145173342_145174456_145174578_145176036_145176816_145177320_145177329_145263862_145264487_145264739_145264966_145335557_145337132_145338574_145338798_145351088
102598	chr4	-	1083	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-9	-72	9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	10	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCACCCACCCCAGCAAGG	NA	False	NA	NA	False	NA	NA	NA	91740978	91739895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739900_91741000
102599	chr14	+	1633	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	107	425	-45	19	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	1	75	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAAACATGATTGTGTG	1793	False	NA	NA	False	NA	NA	NA	26359335	26377988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
102600	chr19	+	5156	3	Intergenic	novelGene_1222	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1714	2	166	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCGAGTAGCTGAGTAAA	1193	False	NA	NA	False	NA	NA	NA	22699851	22705266	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763_22702197_22702241
102601	chr13	-	2620	5	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	-1	158	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	72.2582175257597	1	145	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGATCAGGAACCTTGA	NA	False	NA	NA	False	NA	NA	NA	66589180	66577792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66578581_66578746_66580291_66581478_66581540_66581739_66581867_66589080
102602	chr17	+	1745	2	Intergenic	novelGene_206	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	95	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCGGTCCCTTGTGAGG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154395_40154436
102603	chr16	-	1063	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	12	10	12	8	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	71	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGGACCAGCTGACA	7145	False	NA	NA	False	NA	NA	NA	18066584	18057657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
102604	chr17	+	3145	16	ISM	ENSMUSG00000001228.15	ENSMUST00000113035.8	3402	17	709	240	615	-240	3prime_fragment	FALSE	canonical	3	348	junction_5	500.6524898126	2	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCCTCGATGAATTTCTT	2121	False	NA	NA	False	NA	NA	NA	56612021	56630246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102605	chr3	-	1714	13	NNC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	16595	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	369.04210652565	1	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTTGCGTGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	104708075	104702147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702369_104702436_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002
102606	chr5	-	3946	27	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	1507	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	254.666715718161	3	109	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	9118	False	NA	NA	False	NA	NA	NA	100555964	100509508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521283_100521503_100521552_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550208_100551873_100551970_100553302_100553502_100555015_100555140_100555892
102607	chr15	-	1233	8	NNC	ENSMUSG00000022312.12	novel	1295	8	NA	NA	-29	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	871.396252328083	1	79	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTTGTGTGTATTT	NA	False	NA	NA	False	NA	NA	NA	51728879	51649959	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_51650222_51651301_51651461_51653422_51653510_51659791_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
102608	chr17	-	2647	15	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	18	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	187.911996336974	1	98	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2398	False	NA	NA	False	NA	NA	NA	45744449	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730707_45736801_45736906_45737445_45737608_45738864_45738969_45744316
102609	chr12	-	1432	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	2	-17	-2	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	630	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638734	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
102610	chr4	+	3655	10	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-30	-16	multi-exon	TRUE	non_canonical	0	0	junction_3	237.126210078458	5	60	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATATTTTAACAAGGTTG	NA	False	NA	NA	False	NA	NA	NA	147056402	147145235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147058404_147058498_147065612_147065693_147136965_147137048_147140055_147140183_147141715_147142355_147142438_147142912_147142995_147143248_147143331_147143388_147143554
102611	chr16	+	1754	10	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-4	combination_of_known_splicesites	FALSE	canonical	3	110	junction_7	662.047833115805	3	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATATAGGTGGTCTGGC	6053	False	NA	NA	False	NA	NA	NA	22926507	22932692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22930252_22930343_22930566_22930647_22931916
102612	SIRV5	+	674	4	NNC	SIRV5A	novel	2029	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	2	12	junction_1	5074.24834061383	24	15	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1106_8076_8382_8454_8586_10858
102613	chr17	+	1416	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	45	1157	0	-27	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	1	47	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGAATTAATAAAGTACTAG	NA	False	NA	NA	False	NA	NA	NA	29251646	29261190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
102614	chr12	+	2008	10	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	43	-137	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1987.89397213343	2	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGATGTTTTTGTAATATG	NA	False	NA	NA	False	NA	NA	NA	24758282	24764008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761536_24761667_24761802_24762659_24762765_24762859_24762974_24763078
102615	chr15	+	4907	3	Antisense	novelGene_ENSMUSG00000060429.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	140	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	55735055	55740288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_55737047_55737288_55737418_55737501
102616	chr2	-	641	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	27	46	-8	-46	multi-exon	FALSE	canonical	3	2058	junction_4	989.165146727279	1	45	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATGTTATTTCCACAGT	NA	False	NA	NA	False	NA	NA	NA	73741643	73738836	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
102617	chr18	-	4155	23	NNC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	5108	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	387.745264956089	1	168	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	NA	False	NA	NA	NA	60976410	60946826	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949597_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297
102618	chr4	+	2846	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	85	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	68.3435403397632	3	62	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216579	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216762_147390174_147390233_147534439_147534577_147536170_147536275_147576850_147577009_147639766_147639921_147661528_147661587_147665698_147665826_147667290_147667436_147667927
102619	chr18	-	802	5	Antisense	novelGene_ENSMUSG00000024608.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5435	51	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGACGGACTTCCGCCATC	NA	False	NA	NA	False	NA	NA	NA	60911618	60907463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_60907756_60909468_60909624_60910001_60910162_60910882_60910960_60911500
102620	chr7	+	3762	30	NNC	ENSMUSG00000013928.14	novel	1182	4	NA	NA	-37898	-1485	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	103	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGGAAAGCCGGCGCCACC	60	False	NA	NA	False	NA	NA	NA	29941620	29979835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_29941698_29941820_29941938_29942170_29942303_29942467_29942571_29942861_29942959_29943256_29943382_29943894_29943966_29944116_29944314_29944713_29944935_29947043_29947094_29949203_29949337_29950099_29950226_29950816_29950881_29950957_29951068_29951738_29951816_29953406_29953529_29953609_29953682_29955232_29955358_29957482_29957572_29960711_29960894_29962038_29962193_29964500_29964691_29967198_29967374_29969579_29969754_29970097_29970241_29971035_29971203_29971751_29971806_29973368_29973434_29974524_29974612_29979572
102621	chr17	+	3482	16	NIC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	0	-5	intron_retention	FALSE	canonical	3	638	junction_1	460.234210906674	3	103	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	1447	False	NA	NA	False	NA	NA	NA	56611347	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102622	chr5	-	1792	2	Antisense	novelGene_ENSMUSG00000029430.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	52	55	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTATAATGGCACACTGG	NA	False	NA	NA	False	NA	NA	NA	129101386	129099087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_129099380_129099886
102624	chr1	-	2919	18	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-13	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	627.217477997769	1	82	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTATTTGTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	20890497	20873198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873447_20873512_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
102625	chr5	+	2870	17	NNC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	-2	44	intron_retention	FALSE	non_canonical	0	0	junction_4	802.416029485329	1	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTCATTGTCGTCTTAA	NA	False	NA	NA	False	NA	NA	NA	108213620	108255380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108215325_108215439_108217027_108217230_108228690_108228888_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
102626	chr4	+	2735	4	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-280491	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	24.6891789161883	1	38	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	5616	False	NA	NA	False	NA	NA	NA	147109639	147418187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147109730_147400360_147400439_147409230_147409335_147415724
102627	chr6	-	2527	24	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	18	-1	at_least_one_novel_splicesite	FALSE	canonical	3	774	junction_16	87.5050309112717	2	60	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAATTCTTTGTAAGCGT	3098	False	NA	NA	False	NA	NA	NA	71885684	71857627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866350_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
102628	chr7	+	1066	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	49	117	49	-117	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCCAACACTGAGCATCT	NA	False	NA	NA	False	NA	NA	NA	51396443	51397509	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397500
102630	chr8	+	2886	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	7	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1086.55721777548	1	86	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760517	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768311_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781224_111782055
102632	chr5	-	1747	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-10	intron_retention	FALSE	canonical	0	0	junction_3	1656.31755409402	2	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACAAACAGCTTGTGGCT	8918	False	NA	NA	False	NA	NA	NA	142892480	142888879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890400_142890987_142891232_142891318_142891448_142892406
102633	chr11	+	1835	13	Antisense	novelGene_ENSMUSG00000025155.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	89	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGGAGCCGGAAGCGTACT	2692	False	NA	106	True	NA	NA	NA	120680032	120687221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120680384_120680480_120680561_120681977_120682177_120682680_120682752_120682844_120682954_120683182_120683312_120683502_120683623_120683859_120683946_120684666_120684773_120685093_120685143_120685726_120685838_120686302_120686550_120687044
102634	chr16	+	3230	9	NNC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	-3	-5	intron_retention	FALSE	canonical	0	0	junction_2	642.157484091714	3	61	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6059	False	NA	NA	False	NA	NA	NA	22926513	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927470_22927602_22927869_22928010_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
102635	chr9	+	780	1	FSM	ENSMUSG00000090602.4	ENSMUST00000164523.4	852	1	377	-305	377	305	mono-exon	FALSE	NA	NA	NA	NA	NA	135	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGTAAAAAAAAAAAAACTT	NA	False	NA	NA	False	NA	NA	NA	16941717	16942497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_16941700_16942500
102636	chr9	+	1849	10	NNC	ENSMUSG00000032607.13	novel	1354	9	NA	NA	-5	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	80.958761030875	7	44	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTTGCTATGGTCTCTA	NA	False	NA	NA	False	NA	NA	NA	108174115	108179492	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108174225_108174340_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518_108178883_108179045
102638	chr2	-	1250	7	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	-17	10003	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	66.5198383107543	1	67	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAAGAGTCTAGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	59955953	59799015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_59799367_59799561_59799763_59807702_59807897_59808892_59809052_59831849_59831901_59836386_59836534_59955806
102639	chr17	-	1687	1	Antisense	novelGene_ENSMUSG00000119584.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTACTGGCAGGATCAACCA	NA	False	NA	NA	False	NA	NA	NA	40158954	40157267	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_40157300_40159000
102640	chr2	-	2259	6	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	2233	multi-exon	FALSE	non_canonical	0	0	junction_1	67.0194001763668	1	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTTCTCTAAGGCCCC	NA	False	NA	NA	False	NA	NA	NA	156681710	156629498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156629506_156631635_156632366_156643024_156644081_156679742_156679834_156680337_156680457_156681454
102641	chr5	+	2413	15	NNC	ENSMUSG00000029267.18	novel	4060	15	NA	NA	105	47	intron_retention	FALSE	non_canonical	0	0	junction_3	791.622745648817	2	43	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTCGTCTTAATAT	NA	False	NA	NA	False	NA	NA	NA	108213727	108255383	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235259_108235815_108235956_108239926_108240023_108241203_108241270_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251968_108252131_108252185_108252291_108252397_108254453
102642	chr17	+	2978	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	47	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	867.265530273168	1	72	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	546	False	NA	NA	False	NA	NA	NA	56610446	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617776_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627547_56629026_56629126_56629355_56629635_56629837
102643	chr4	-	2389	10	Antisense	novelGene_ENSMUSG00000070605.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	32	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGAAACCGCGGAACTT	NA	False	NA	NA	False	NA	NA	NA	146552873	146206905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146207052_146207710_146207842_146209451_146209550_146291423_146291460_146312911_146312970_146388484_146388613_146390757_146390885_146391943_146392661_146392744_146393427_146552607
102644	chr11	+	933	1	ISM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	1108	2	603	-2	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62443104	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_62443100_62444000
102645	chr19	-	2098	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	67	452	-62	0	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	2	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902356	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
102646	chr16	-	500	1	Intergenic	novelGene_3821	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	64	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102647	chr5	+	4032	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	748.79231358828	1	122	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTAATGAGTTTTTCTT	NA	False	NA	NA	False	NA	NA	NA	108208609	108256869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229071_108234849_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241276_108241995_108242115_108246984_108247053_108247519_108247598_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
102648	chr4	+	3531	10	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-2425	182155	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	129.929990645485	9	49	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146596951	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146596978_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146802050_146802590_146802671_146803251_146803332_146803647_146803814_146804170_146804673
102649	chr4	+	2519	7	NNC	ENSMUSG00000078502.11	novel	1221	3	NA	NA	-72184	-323	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	24.214320831552	6	64	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTATTAAGGTCTTTA	3117	False	NA	NA	False	NA	NA	NA	145239551	145351588	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145239640_145314001_145314095_145315865_145315978_145343687_145343750_145347127_145347255_145348721_145348860_145349689
102650	chr4	-	3267	11	Antisense	novelGene_ENSMUSG00000095096.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	84	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGGGAAATTAAATGGCA	NA	False	NA	NA	False	NA	NA	NA	146552873	146034805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146034828_146207583_146207842_146291415_146291509_146365126_146365261_146368121_146368308_146384335_146384429_146388484_146388613_146390757_146390908_146391321_146392661_146392828_146393458_146552638
102651	chr10	-	3742	1	Antisense	novelGene_ENSMUSG00000091730.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	86	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCGTGCTGAACCAAACAC	483	False	NA	NA	False	NA	NA	NA	20505127	20501385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_20501400_20505100
102654	chr11	+	958	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17708.5	4	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGGTGTCACTTGTGAA	NA	False	NA	NA	False	NA	NA	NA	62442329	62444037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443745_62443950
102655	chr4	+	2657	5	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-24	-199	multi-exon	FALSE	canonical	0	0	junction_3	240.699371623609	2	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTACCAGATGAAGACAAG	4086	False	NA	NA	False	NA	NA	NA	147314716	147417992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147316807_147316901_147409230_147409339_147413500_147413566_147415777
102656	chr2	-	3327	24	NNC	ENSMUSG00000027379.15	novel	3418	25	NA	NA	23	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	238.460936313368	1	131	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCATGTGACCTAGTTGTT	NA	False	NA	NA	False	NA	NA	NA	127673756	127643045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_127643359_127644937_127645045_127646101_127646271_127646389_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659357_127661132_127661285_127663594_127663777_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671593_127673695
102657	chr5	+	1703	5	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	35	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAGACACAAAAGAAGGC	NA	False	NA	NA	False	NA	NA	NA	142888871	142891449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142889987_142890195_142890540_142890993_142891234_142891320
102658	chr17	+	2065	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	24	-240	24	240	mono-exon	FALSE	NA	NA	NA	NA	NA	253	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCGCGGGCGTCGTGCCTC	NA	False	NA	-1	True	NA	NA	NA	40157267	40159332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157300_40159300
102659	chr2	+	2340	9	NNC	ENSMUSG00000059005.14	novel	5150	11	NA	NA	0	824	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	4575.12691080805	2	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGAATGGGGCGTGCTAG	7475	False	NA	NA	False	NA	NA	NA	75489604	75497289	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492925_75493004_75493101_75493188_75493222_75495620_75495646_75495741
102661	chr6	-	2036	8	NNC	ENSMUSG00000005667.9	novel	2085	8	NA	NA	22	-23	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	897.065033021234	2	96	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGGAATGCGTTTCTG	NA	False	NA	NA	False	NA	NA	NA	83294566	83282695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290347_83290529_83294410
102662	chr14	+	2057	13	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	772.995292496806	1	105	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATCCTCAGACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291101_30291917_30292070_30292159_30292359_30293108_30293203_30294164_30294288_30295293
102663	chrM	+	2074	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-250	0	250	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGATCCCCAAGTCTCTG	-4	True	NA	4	True	NA	NA	NA	11741	13815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13800
102664	chr13	+	699	2	Genic_Genomic	ENSMUSG00000114625.2	novel	682	1	NA	NA	-105726	159	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	18	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCCTGAGATATTCCAG	NA	False	NA	NA	False	NA	NA	NA	65950310	66056877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_65950786_66056653
102665	chr5	+	7324	3	Antisense	novelGene_ENSMUSG00000091273.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	105	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGAGTTTCCTGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	17238469	17447634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_17242044_17248558_17248609_17443934
102667	chr15	+	1593	4	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-98449	-152	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	81	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGGGGCAGATAGTGC	NA	False	NA	NA	False	NA	NA	NA	98829322	98935839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98829466_98847918_98848744_98934966_98935243_98935490
102668	chr14	+	1214	1	FSM	ENSMUSG00000045799.7	ENSMUST00000052615.7	336	1	-179	-699	-179	699	mono-exon	FALSE	NA	NA	NA	NA	NA	1	76	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATATTTTACAGTG	NA	False	NA	NA	False	NA	NA	NA	13669258	13670472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_13669300_13670500
102669	chr16	+	3275	8	NIC	ENSMUSG00000022884.17	novel	2708	11	NA	NA	15	0	intron_retention	FALSE	canonical	3	675	junction_7	498.696545905382	1	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6892	False	NA	NA	False	NA	NA	NA	22927346	22932696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22930014_22930252_22930343_22930566_22930647_22931100
102670	chr13	+	719	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	-11	230	-11	-230	mono-exon	FALSE	NA	NA	NA	NA	NA	8	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATCTCTTTGAGCGCCT	7951	False	NA	NA	False	NA	NA	NA	74554516	74555235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_74554500_74555200
102671	chr10	-	3773	1	Intergenic	novelGene_3481	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	178	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCTGTGCTATAATGAGG	NA	False	NA	NA	False	NA	NA	NA	74555602	74551829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74551800_74555600
102672	chr5	+	995	9	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	54	66708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	2486.84023599728	2	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTTCCAAAGGTCCTGA	NA	False	NA	NA	False	NA	NA	NA	108048491	108123579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762_108055919_108123552
102673	chr4	+	2680	12	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	13	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	38.0916684671539	5	52	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216507	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578927_147637755_147637884_147639766_147639865_147651591_147651652_147661528_147661587_147665698_147665826_147667290_147667445_147667771_147668493_147668576_147668784_147669064
102674	chr5	-	1474	4	NIC	ENSMUSG00000047215.15	novel	738	8	NA	NA	2	0	intron_retention	FALSE	canonical	3	8565	junction_1	1908.297845376	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	65548332	65545706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_65545785_65545904_65546954_65547730_65547827_65548081
102675	chr19	+	827	3	NNC	ENSMUSG00000056201.9	novel	2354	4	NA	NA	2121	-4	intron_retention	FALSE	canonical	0	0	junction_1	3086.5	1	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACAACATGGCTTTTGGGT	NA	False	NA	NA	False	NA	NA	NA	5542713	5544053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_5542819_5543182_5543260_5543408
102676	chr16	+	1941	10	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	179	junction_9	730.361774046023	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
102677	chr15	+	3503	13	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-3929	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	323.607390298113	1	150	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATAAATCCAGTCTTTA	NA	False	NA	NA	False	NA	NA	NA	101990529	102005581	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992805_101993113_101993231_101994896_101995075_101997052_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
102678	chr7	+	3458	28	NNC	ENSMUSG00000109168.2	novel	448	2	NA	NA	-4	19882	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	93	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCGCTCTCTCGCGAGAAC	NA	False	NA	NA	False	NA	NA	NA	28014318	28038180	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_28014697_28014777_28014869_28015146_28015358_28015440_28015605_28015709_28015851_28016195_28016314_28016409_28016541_28016640_28016746_28016819_28016928_28017163_28017247_28018163_28018289_28018378_28018525_28019389_28019541_28019646_28019799_28021423_28021560_28021641_28021743_28021893_28021993_28023148_28023224_28023320_28023404_28025370_28025627_28028127_28028215_28028675_28028749_28028839_28028909_28029006_28029076_28029991_28030055_28030856_28030953_28037774_28037861_28038119
102679	chr11	+	1727	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-16	-267	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4054.90411230648	17	29	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3067	False	NA	NA	False	NA	NA	NA	75623770	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642736_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
102680	chr1	+	2120	12	Antisense	novelGene_ENSMUSG00000025980.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCGCGCACCGCAATGAGC	NA	False	NA	NA	False	NA	NA	NA	55117118	55127005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_55117598_55117685_55117864_55118211_55118388_55119258_55119505_55120229_55120334_55120820_55120990_55121218_55121310_55122224_55122320_55122881_55122965_55123689_55123944_55125923_55126101_55126937
102681	chr10	-	2923	12	Antisense	novelGene_ENSMUSG00000064441.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	69	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGATGGGCAGCCAGGCTG	7864	False	NA	NA	False	NA	NA	NA	81018330	81013489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81013713_81013894_81014066_81014511_81014726_81014913_81015106_81015335_81015638_81015721_81015872_81015960_81016244_81016396_81016505_81016635_81016990_81017059_81017243_81017324_81017459_81017721
102682	chr3	+	928	5	NNC	ENSMUSG00000037894.14	novel	1069	5	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	6351.56427090996	4	49	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACCCCGTGGTACTTTTG	NA	False	NA	NA	False	NA	NA	NA	137570349	137572679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_137570458_137570893_137570972_137571280_137571384_137571795_137571902_137572146
102683	chr3	+	5335	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	145	1	-139	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	1	193	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTATTTATTTCTACCC	NA	False	NA	NA	False	NA	NA	NA	41510166	41571154	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
102684	chr14	-	4932	20	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-56	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	77.3988125056536	1	79	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655293	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54654771
102685	chr13	-	1831	5	NNC	ENSMUSG00000074865.12	novel	677	5	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_1	11.7765657133139	6	50	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706401	62664608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62664644_62665187_62666545_62668231_62668359_62670268_62670480_62706300
102686	chr4	+	2711	10	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-74	-10	multi-exon	TRUE	non_canonical	0	0	junction_2	38.6104316486978	2	76	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCAACAAGTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	147209638	147669645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147533653_147533754_147533923_147533956_147536170_147536264_147586007_147586206_147661528_147661587_147665698_147665826_147667290_147667436_147667927
102687	chr12	-	1405	9	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	25219	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3378.01613145571	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTTTTAAACATTGGTGA	NA	False	NA	NA	False	NA	NA	NA	111638731	111610575	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111610586_111635796_111636176_111636258_111636449_111636595_111636720_111637306_111637445_111637648_111637782_111637858_111638014_111638199_111638408_111638663
102688	chr2	-	4115	8	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078869.3	novel	1581	4	NA	NA	3277	1704	intron_retention	TRUE	non_canonical	0	0	junction_1	0	2	111	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGTCTGTCCATCCT	NA	False	NA	NA	False	NA	NA	NA	177012823	176954742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_176955511_176956444_176956764_176956931_176957246_177006374_177006719_177007143_177008006_177008192_177009277_177009329_177009429_177012498
102689	chr1	+	786	6	NNC	ENSMUSG00000025967.17	novel	1939	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1523.01437944623	19	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	NA	False	NA	NA	NA	63216288	63218815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_63216451_63216912_63217036_63217597_63217718_63217990_63218058_63218406_63218522_63218616
102690	chr19	-	1874	1	Antisense	novelGene_ENSMUSG00000025203.7_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	55	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGGATAAGAGGTGGAGAA	NA	False	NA	NA	False	NA	NA	NA	44295271	44293397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_44293400_44295300
102691	chr17	-	921	5	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	4862.22250493537	5	45	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGCTCTCCTTGTAACAC	NA	False	NA	NA	False	NA	NA	NA	45884192	45878698	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879783_45879806_45882724_45882838_45884092
102692	chr5	-	1726	11	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	63	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCGAGCGCGGCAAAGCC	NA	False	NA	NA	False	NA	NA	NA	75801483	75735655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75735776_75767682_75767957_75769927_75770210_75771465_75771535_75776005_75776154_75781507_75781695_75783646_75783765_75797953_75798067_75799622_75799805_75801150_75801256_75801355
102693	chr1	-	748	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	91	-161	-91	mono-exon	FALSE	NA	NA	NA	NA	NA	2	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTCTACTCACAATTCTAG	NA	False	NA	NA	False	NA	NA	NA	24653893	24653145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
102694	chr7	-	702	5	Antisense	novelGene_ENSMUSG00000006333.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	35	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGACAAGGCGGTTGGAC	5826	False	NA	NA	False	NA	NA	NA	3709896	3707039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_3707057_3707318_3707447_3707643_3707766_3708729_3708923_3709654
102695	chr7	+	1503	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	471	-1	6	0	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	2	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46497025	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
102696	chr15	-	1703	15	NNC	ENSMUSG00000022464.15	novel	3932	16	NA	NA	-10	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	424.137353811191	2	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAGGCCGTGCAGTGCA	NA	False	NA	NA	False	NA	NA	NA	96953847	96894650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906330_96906890_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
102697	chr18	-	5206	3	Antisense	novelGene_ENSMUSG00000088726.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	53	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	8202	False	NA	NA	False	NA	NA	NA	63674090	63577853	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_63581270_63609317_63609550_63672532
102698	chr19	-	5017	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	176	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTTTCTCGTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	22705271	22699835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700364_22700742_22701102_22701141
102699	chr4	-	2444	9	Antisense	novelGene_ENSMUSG00000070605.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	62	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGATGAAACCGCGGAACT	NA	False	NA	NA	False	NA	NA	NA	146552847	146206906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146207241_146207707_146207859_146291421_146291509_146293437_146293498_146388484_146388613_146390757_146390849_146391652_146392358_146392778_146393427_146552607
102700	chr17	+	3367	15	NIC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	65	382	intron_retention	FALSE	canonical	3	1413	junction_5	323.863893369686	1	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAAATGTTTTTGTTTT	564	False	NA	NA	False	NA	NA	NA	56610464	56629721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102701	chr17	-	924	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	375	638	8	0	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	2	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2302	False	NA	NA	False	NA	NA	NA	71309174	71301288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
102702	chr4	+	2027	5	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	4	-4	multi-exon	TRUE	non_canonical	0	0	junction_1	5.62916512459885	1	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	147216498	147669651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216626_147533935_147533956_147536170_147536268_147598898_147599216_147668185
102703	chr10	-	901	5	Fusion	ENSMUSG00000093674.8_ENSMUSG00000118400.2	novel	582	4	NA	NA	9	0	multi-exon	FALSE	non_canonical	0	0	junction_4	8421.22701867133	2	5	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	9963	False	NA	NA	False	NA	NA	NA	128512509	128383982	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_128384299_128384526_128384550_128384817_128384843_128384956_128384967_128511982
102706	chr4	+	3129	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000070605.5	novel	314	3	NA	NA	2	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	79.511626605372	2	62	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146033883	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146033904_146206938_146207223_146209452_146209550_146368119_146368213_146371788_146371903_146384279_146384431_146388486_146388614_146390758_146390897_146391562_146393443_146552623
102707	chr17	-	1047	2	NNC	ENSMUSG00000001525.11	novel	979	3	NA	NA	31	797	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	38	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTCTCCTTTCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	36149069	36145699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146636_36148958
102708	SIRV5	+	4015	15	NNC	SIRV5A	novel	1890	17	NA	NA	2242	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3323.94164527967	99	21	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	3298	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6440_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
102709	chr2	+	3270	9	NIC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	-1242	-1376	intron_retention	FALSE	canonical	1	2	junction_4	5.45435605731786	3	105	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAGCCTGAGGCCTCCA	4739	False	NA	NA	False	NA	NA	NA	30025799	30040649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
102710	chr11	+	5211	2	Antisense	novelGene_ENSMUSG00000081575.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	0	0	junction_1	0	5	144	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGGCTATTCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	29389501	29535987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_29390940_29532214
102711	chr4	+	2181	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-5	-6	multi-exon	TRUE	non_canonical	0	0	junction_1	35.3426377173001	3	43	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	147216489	147669649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216645_147217303_147217441_147447267_147447362_147637752_147637807_147665698_147665826_147667290_147667430_147668004_147668423_147668592
102714	chr4	-	1264	1	FSM	ENSMUSG00000095042.2	ENSMUST00000119266.2	1002	1	-73	-189	-73	189	mono-exon	FALSE	NA	NA	NA	NA	NA	5	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	57372027	57370763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_57370800_57372000
102715	chr9	+	1417	8	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1430	-155	intron_retention	FALSE	canonical	3	16882	junction_2	1488.93468285077	24	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACAAACCCTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	64082104	64085793	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085300_64085504
102716	chr12	-	1525	2	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	10	68	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCCGCCCCTACCCTCCC	NA	False	NA	NA	False	NA	NA	NA	86568396	86566030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_86566899_86567739
102717	chr4	+	2754	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	7	0	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3199076928666	2	91	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217354_147217441_147578832_147578926_147637751_147637884_147639766_147639810_147665698_147665826_147667290_147667431_147667838
102718	SIRV5	+	1442	13	NNC	SIRV5A	novel	2029	16	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_10	3121.99392749783	18	22	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6374_8003_8382_8454_8586_10858
102721	chr6	+	3765	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	12	-2110	7	2105	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	1	201	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGTACTGAGTTTGCAA	5856	False	NA	NA	False	NA	NA	NA	67243978	67263400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
102724	chr3	-	1308	11	NIC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	16584	-383	combination_of_known_splicesites	FALSE	canonical	0	0	junction_8	397.116154292419	2	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCAGGAGCGGGAGGGTG	NA	False	NA	NA	False	NA	NA	NA	104708086	104702534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707261_104707366_104707590_104707750_104708002
102725	chr17	+	5297	3	NNC	ENSMUSG00000045744.12	novel	997	5	NA	NA	-332	3569	intron_retention	FALSE	non_canonical	0	0	junction_1	0	15	48	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAGGACGGCGAGGCGA	NA	False	NA	NA	False	NA	NA	NA	24692525	24698012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24694928_24695021_24696307_24696402
102726	chrUn_JH584304v1	-	3711	3	Intergenic	novelGene_4631	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	227	junction_2	336.5	2	104	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGTACTTCGAGAGAA	NA	False	NA	NA	False	NA	NA	NA	59030	52213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54868_55111_55702_58563
102727	chr4	+	2765	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	5	0	multi-exon	FALSE	non_canonical	0	0	junction_1	19.2459908361535	1	54	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216499	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147534439_147534577_147536170_147536264_147637752_147637884_147639766_147639872_147651463_147651516_147667318_147667431_147667838
102728	chr15	+	2409	5	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	96	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTACAGCCGCTCCGCAG	NA	False	NA	NA	False	NA	NA	NA	36771019	36793833	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36773025_36775488_36775578_36775658_36775689_36791058_36791235_36793724
102730	chr1	-	4126	11	Antisense	novelGene_ENSMUSG00000026439.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	57	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAAGGCCCCGCGGCTTCCG	NA	False	NA	NA	False	NA	NA	NA	132432398	132405116	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_132405281_132412478_132412656_132417324_132417467_132418216_132418322_132420288_132420399_132421550_132421670_132421755_132421913_132422007_132424005_132424586_132424766_132425666_132425744_132431499
102731	chr5	+	889	6	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-5	-1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	7850.77569670666	3	49	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTGGTGTCCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	121343466	121347027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_121343727_121343816_121343919_121344729_121344874_121345211_121345227_121346453_121346639_121346844
102732	chr10	-	1927	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-17	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	615.967192488547	117	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899685	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897196_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
102733	chr5	-	2291	1	ISM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	1753	6	925	6	mono-exon	FALSE	NA	NA	NA	NA	NA	5	76	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125465325	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125463000_125465300
102735	chr3	+	2138	17	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-3	-351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	492.862648050905	20	81	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCTGATTTTTAACTTT	4853	False	NA	NA	False	NA	NA	NA	34074250	34124120	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103309_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112387_34115976_34116181_34118267_34118469_34123065_34123519_34124047
102736	chr7	+	2996	24	Genic_Genomic	ENSMUSG00000109168.2	novel	448	2	NA	NA	1110	19898	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGGCGCGTCAGTCTCA	NA	False	NA	NA	False	NA	NA	NA	28015432	28038196	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_28015599_28015702_28015870_28016208_28016314_28016409_28016541_28016640_28016746_28016819_28016928_28017163_28017258_28018177_28018294_28018383_28018525_28019389_28019541_28019646_28019799_28021423_28021564_28021643_28021739_28021888_28021993_28023148_28023224_28023320_28023402_28025366_28025627_28028127_28028222_28028680_28028909_28029006_28029081_28029998_28030078_28030797_28030965_28037774_28037861_28038119
102737	chr18	+	4072	1	Antisense	novelGene_ENSMUSG00000073647.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	88	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCCAAACCGCTCTGGC	NA	False	NA	NA	False	NA	NA	NA	4195179	4199251	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_4195200_4199300
102738	chr11	+	874	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	17708.5	4	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCATATATGGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	62442329	62444030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443391_62443673
102739	chr4	-	2219	6	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	1488	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	214.65227695042	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	147725465	147696393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147696773_147696833_147697476_147697613_147698506_147699736_147699864_147702873_147702956_147725368
102741	chr15	-	1693	4	NNC	ENSMUSG00000022285.18	novel	2285	6	NA	NA	-68	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	90	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAACCGCTA	690	False	NA	NA	False	NA	NA	NA	36793831	36771811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772976_36776489_36776599_36790927_36791233_36793716
102742	chr5	+	2000	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	482	0	12	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	237	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	768	False	NA	NA	False	NA	NA	NA	77099635	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
102743	chr15	+	1638	9	ISM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	644	6	604	-6	3prime_fragment	FALSE	canonical	3	9291	junction_6	1634.02721443065	3	63	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTTGAATGGAATGACAAC	NA	False	NA	NA	False	NA	NA	NA	103149524	103153376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
102744	chr11	+	1726	8	FSM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	35	-870	35	-4	multi-exon	FALSE	canonical	3	3141	junction_5	166.267181097786	1	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3574	False	NA	NA	False	NA	NA	NA	52265124	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
102745	chr16	-	519	1	Intergenic	novelGene_3814	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCCACTTTTGGTAAGCA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211520	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102746	chr4	+	2391	3	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	9762	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	8	75	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145321534	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145321987_145348721_145348860_145350109
102749	chr8	+	3171	20	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	3117	-2095	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	770.383377596151	1	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111763664	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768870_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
102750	chr1	-	4547	9	Antisense	novelGene_ENSMUSG00000026439.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	85	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCGGACTTAGAAGGCCCC	NA	False	NA	NA	False	NA	NA	NA	132426276	132405126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_132405281_132412478_132412654_132417321_132418322_132420288_132420399_132421550_132421670_132421755_132421898_132422000_132424005_132424532_132424766_132425666
102751	chr9	+	1315	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	7	197	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	6123.96480140839	11	36	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGAGCAAGTAGAGACCGC	NA	False	NA	NA	False	NA	NA	NA	64080681	64085749	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082287_64082483_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
102752	chr4	+	2853	6	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-282	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.877380297628	10	108	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGCATTTTGTATATT	910	False	NA	NA	False	NA	NA	NA	145237344	145265476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145239546_145239651_145245504_145245556_145257381_145257486_145261385_145261513_145263160
102753	chr4	+	2067	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	454	2	NA	NA	-32	-5	multi-exon	FALSE	non_canonical	0	0	junction_3	121.678195800782	1	115	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209680	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536227_147595209_147595337_147596801_147597071_147598759_147599103_147668576
102754	chr11	+	3141	4	Antisense	novelGene_ENSMUSG00000038615.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	128	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCAGTCTCTCCATCTACT	NA	False	NA	NA	False	NA	NA	NA	96708257	96712946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_96709816_96709938_96711342_96712075_96712236_96712926
102755	chr6	-	2156	13	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	-1	-257	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1216.64117267811	1	87	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGCTGTTTTGGCATGA	NA	False	NA	NA	False	NA	NA	NA	88875684	88860712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866856_88870375_88870496_88874268_88874413_88875626
102756	chr2	+	1920	14	NNC	ENSMUSG00000017760.17	novel	2534	15	NA	NA	-3	-438	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	278.228610612413	2	52	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGGGCTCTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	164675774	164681501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_164676129_164676239_164676335_164676627_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
102757	chr5	-	1833	2	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	925	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	4	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTGTTGTTGGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125465325	125463030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125463256_125463717
102758	chr18	+	6701	7	ISM	ENSMUSG00000042439.14	ENSMUST00000237553.2	5175	10	40895	-1086	-2158	12	intron_retention	FALSE	canonical	3	46	junction_1	18.6160026739243	13	201	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTATTGGTGGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	65756050	65822024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_65758406_65771820_65772003_65777263_65777441_65784630_65784794_65789421_65789704_65815965_65816079_65818595
102759	chr8	+	4128	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-3341	-2098	intron_retention	FALSE	canonical	0	0	junction_1	869.259762756446	4	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111756434	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111756549_111759816_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
102760	chr4	+	2979	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-30	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	40.0632216427369	4	58	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206870	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146291416_146291510_146365127_146365259_146368115_146368209_146384326_146384431_146388486_146388614_146390758_146390904_146391317_146392139_146392304_146393394_146552574
102762	chr3	-	2973	25	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	293.420051102321	1	73	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3528	False	NA	NA	False	NA	NA	NA	89959801	89907446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909585_89909784_89910551_89910569_89919984_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
102763	SIRV5	+	4348	18	NNC	SIRV5A	novel	1890	17	NA	NA	8	0	intron_retention	FALSE	non_canonical	0	0	junction_13	3700.44329617889	2	82	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1064	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7759_7873_8017_8277_8382_8454_8586_10858_10992_11133
102764	chrX	+	1117	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	118	-25	-118	mono-exon	FALSE	NA	NA	NA	NA	NA	4	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAAGTTCATTGACACCA	NA	False	NA	NA	False	NA	NA	NA	13068784	13069901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069900
102765	chrM	+	622	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	-42	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAGGAATTATCGAAGAC	-2	True	NA	87	True	NA	NA	NA	14144	15246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14700_15179
102766	chr4	+	2749	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	1	-337	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	221.910314091076	5	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAAAAGGAAACTATTTAA	913	False	NA	NA	False	NA	NA	NA	145237347	145265421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145238293_145238442_145257420_145257486_145261385_145261513_145263160
102767	chr12	-	1341	7	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	313	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2915.58511851967	4	70	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638403	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636704_111637306_111637479_111637648_111637782_111637858_111638014_111638199
102768	chr11	-	5708	16	Antisense	novelGene_ENSMUSG00000040463.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	75	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTAGGTCTCATCATTGCCT	NA	False	NA	89	True	NA	NA	NA	72342373	72333413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_72336556_72336715_72336888_72336983_72337082_72337795_72337893_72337972_72338125_72338373_72338464_72338553_72338708_72338780_72338951_72339040_72339204_72339557_72339787_72339865_72340001_72340086_72340153_72340542_72340658_72340816_72340919_72341449_72341600_72341700
102769	chr11	-	3813	2	Intergenic	novelGene_2357	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTAAATCAGGGACTG	NA	False	NA	NA	False	NA	NA	NA	57450691	57446784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57450383_57450476
102770	chr15	-	2000	15	ISM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	6831	1355	-564	349	3prime_fragment	FALSE	canonical	3	2899	junction_10	234.053772384354	2	46	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTCTGTCCTCACGGTTA	6759	False	NA	NA	False	NA	NA	NA	11392920	11383741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872
102771	chr11	+	1411	7	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	77	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGGGGTCACAAGACTTCC	1136	False	NA	NA	False	NA	NA	NA	120468949	120472429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120469458_120469845_120470191_120470304_120470408_120470495_120470573_120470794_120470884_120471013_120471222_120472348
102772	chr10	+	2986	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2604.49933632155	6	50	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013895_81014069_81014514_81014727_81014914_81015094_81015179_81015209_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
102773	chr3	+	986	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	86	7	0	-7	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	2	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGTAGCATCTTGCTTTA	NA	False	NA	NA	False	NA	NA	NA	32791224	32805708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
102774	chr11	-	3604	5	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	-250	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	560.391994500278	3	48	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	NA	False	NA	NA	NA	96719031	96708256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_96708369_96709233_96711343_96712076_96712236_96712929_96713146_96718023
102775	chr1	-	6786	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	182	96	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_41	286.354208799321	1	98	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAATTTTCTTTTCCGAG	8092	False	NA	NA	False	NA	NA	NA	84816827	84701888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84773410_84773537_84792543_84792691_84816744
102776	chr3	+	2241	19	NNC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	91	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	500.425427036528	1	77	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTCCTGTGTCGGTAAGT	NA	False	NA	NA	False	NA	NA	NA	151916248	151938402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_151916338_151919613_151919725_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925497_151925585_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
102777	chr1	-	1498	7	ISM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	5944	0	5944	0	3prime_fragment	FALSE	canonical	3	5679	junction_6	394.492677019767	1	46	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	9806	False	NA	NA	False	NA	NA	NA	55121239	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216
102778	chr17	-	732	1	FSM	ENSMUSG00000116864.2	ENSMUST00000231447.2	1031	1	679	-380	679	380	mono-exon	FALSE	NA	NA	NA	NA	NA	1	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16889769	16889037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_16889000_16889800
102779	chr16	+	2713	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_6	783.538901395457	1	84	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929331_22929479_22929875_22930014_22930252_22930343_22930566_22930647_22931100
102781	chr4	+	2188	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	3	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	38.0266313438099	1	51	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206903	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207708_146207846_146291416_146291510_146293441_146293573_146368115_146368159_146388486_146388614_146390758_146390897_146391562_146392197_146392955_146393429_146552609
102782	chr9	-	1642	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1082	20	46	-20	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	1	91	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTTTAATGAGAAATCTG	8182	False	NA	2	True	NA	NA	NA	78387924	78385750	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
102783	chr11	-	3419	14	NNC	ENSMUSG00000038909.17	novel	3470	14	NA	NA	-3	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	329.424080558891	1	170	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGACTGCTCTGAAGC	NA	False	NA	NA	False	NA	NA	NA	95201030	95165085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171308_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194114_95196857_95197023_95200860
102784	chr5	+	2545	19	NNC	ENSMUSG00000005672.13	novel	5214	21	NA	NA	-1215	1707	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	341.229476387307	1	56	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTTTGCTGCTGTCTCC	NA	False	NA	NA	False	NA	NA	NA	75770018	75815223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799819_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810190_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
102785	chr3	+	3018	9	ISM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	27268	7955	5316	1124	internal_fragment	FALSE	canonical	3	273	junction_1	86.6746791167986	3	107	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTTTGAGACAGGATTT	NA	False	NA	NA	False	NA	NA	NA	152079382	152091015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752
102786	chr15	+	2051	1	Intergenic	novelGene_3259	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	47	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGAGGACTGTGGCGCCCT	NA	False	NA	NA	False	NA	NA	NA	22703025	22705076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22703000_22705100
102788	chr11	-	821	5	NNC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-589	307	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	283.025948457028	2	44	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGTTTGTTTCTTAACC	5394	False	NA	NA	False	NA	NA	NA	95859250	95853954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95854419_95857002_95857117_95857502_95857609_95858374_95858450_95859188
102789	chr11	-	3711	3	Intergenic	novelGene_2338	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	141	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTGCAACAAGACCGTTT	NA	False	NA	NA	False	NA	NA	NA	57450923	57445644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57448836_57450309_57450383_57450476
102790	chr3	+	3630	29	Genic_Genomic	ENSMUSG00000105552.2	novel	493	3	NA	NA	-547	26456	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGGAAAAAACAGATGG	NA	False	NA	NA	False	NA	NA	NA	89907874	89955208	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_89908295_89909123_89909176_89909585_89909784_89910551_89910623_89915565_89915668_89916418_89916638_89917742_89917816_89919990_89920047_89922436_89922525_89922607_89922653_89922752_89922805_89924005_89924079_89924421_89924595_89925718_89925776_89926458_89926651_89928205_89928373_89928542_89928824_89930737_89930935_89932367_89932542_89933899_89933988_89935633_89935684_89938620_89938677_89941370_89941482_89941958_89942006_89945674_89945773_89946154_89946324_89951006_89951118_89952160_89952238_89955075
102791	chr12	-	1843	11	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-9	86248	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3572.91437904689	35	78	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCTCAGTACTTGAGAG	NA	False	NA	NA	False	NA	NA	NA	111638726	111549546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111549613_111565101_111565286_111577832_111577963_111635757_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
102792	chr16	+	7241	2	ISM	ENSMUSG00000002845.15	ENSMUST00000169554.8	578	4	-1016	-442	-1016	38	intron_retention	FALSE	canonical	3	646	junction_1	0	1	76	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCTGGAGTGACA	4935	False	NA	NA	False	NA	NA	NA	38401454	38411746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_38402487_38405537
102793	SIRV5	+	4459	19	NIC	SIRV5A	novel	1984	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	681	junction_4	3576.85042717683	857	24	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1019	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
102794	chr7	-	3047	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.188852574577511	1	11	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAATTCGCGCCACACA	9273	False	NA	NA	False	NA	NA	NA	13045351	13012807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016469_13019182_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
102796	chr15	-	2620	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-64	-22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	3	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAATAAATATTGATGATGG	694	False	NA	NA	False	NA	NA	NA	36793827	36771035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771374_36771533_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
102797	chr15	-	1621	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	148	84	84	-84	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	2818	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	-3	True	NA	NA	False	NA	NA	NA	31601802	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
102798	chr7	+	2868	14	Antisense	novelGene_ENSMUSG00000088948.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	70	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCCGGCTCGCTGCTGGCG	NA	False	NA	NA	False	NA	NA	NA	110674575	110682194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110674649_110674793_110676061_110676141_110676283_110676430_110676533_110676617_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680833_110681882
102800	chr5	-	1562	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1402	2	469	-2	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	10	36	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTTGTGGCTCTGTGGCT	4130	False	NA	NA	False	NA	NA	NA	142891107	142888871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
102803	chr12	-	2394	4	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	1	-2	intron_retention	FALSE	canonical	3	7551	junction_2	380.13886351642	2	52	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638715	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111638014_111638199_111638408_111638663
102804	chr16	-	564	1	Intergenic	novelGene_3720	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102805	chr4	+	2391	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	-7	-4	intron_retention	FALSE	canonical	0	0	junction_5	331.695817814388	1	62	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATCTCCACTGTGTACC	NA	False	NA	NA	False	NA	NA	NA	155954064	155973556	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969658_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972420_155972504_155972565_155972640_155972784_155972852_155972983_155973076
102806	chr5	-	695	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	32	1413	0	-133	5prime_fragment	FALSE	canonical	3	4052	junction_1	18.0616229121921	2	14	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCGTGCGTGACATCAA	8921	False	NA	NA	False	NA	NA	NA	142892477	142890282	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142890538_142890991_142891232_142891318_142891448_142892406
102807	chr16	-	564	1	Intergenic	novelGene_3721	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102808	chr9	+	977	6	NNC	ENSMUSG00000032518.7	novel	1599	6	NA	NA	-350	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2180.24314240408	1	56	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	NA	False	NA	NA	NA	119957521	119960625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_119957689_119958223_119958343_119959183_119959426_119959833_119959963_119960065_119960236_119960475
102810	chr2	+	4238	35	NNC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	0	-1	intron_retention	FALSE	non_canonical	0	0	junction_3	95.7439817147902	1	140	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGGTGTCTGTATTGTGG	NA	False	NA	NA	False	NA	NA	NA	180961531	180998406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964591_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180987956_180988011_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716_180998032_180998135
102811	chrM	-	1035	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	84	-600	84	600	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCAGGTATTAATTGCT	1	True	NA	NA	False	NA	NA	NA	13986	12951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_13000_14000
102812	chr4	-	1986	1	Antisense	novelGene_ENSMUSG00000058186.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATTCTATGATGAACTCT	NA	False	NA	NA	False	NA	NA	NA	145431000	145429014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145429000_145431000
102813	chr9	+	2068	9	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	7657.27188588566	14	17	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2459	False	NA	NA	False	NA	NA	NA	40712571	40716496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714154_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
102814	chr12	+	1919	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	53	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1908.10962997413	1	77	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTGAACTTTCATGGCA	NA	False	NA	NA	False	NA	NA	NA	24758292	24764087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763626_24763788
102815	chr15	-	4271	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	111	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAATTAGTGCAGTGTGA	9381	False	NA	NA	False	NA	NA	NA	22704864	22700411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22701710_22701797_22704578_22704671
102817	chr4	+	3515	7	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	3993	5	NA	NA	770	5	multi-exon	FALSE	non_canonical	0	0	junction_5	263.778158054579	1	79	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	NA	NA	NA	147057228	147145256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147057320_147058404_147058498_147136962_147137048_147140055_147140183_147141715_147142355_147142438_147143581_147143918
102818	chr15	-	1842	11	Intergenic	novelGene_3214	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	67	5	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTAGCTGCAGCTGCCA	NA	False	NA	NA	False	NA	NA	NA	12166305	12140683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_12140745_12146238_12146481_12149611_12149808_12150258_12150550_12152886_12153087_12154535_12154649_12156346_12156493_12159682_12159843_12160566_12160774_12162196_12162349_12166231
102820	chr6	+	2417	16	NNC	ENSMUSG00000034269.13	novel	3334	18	NA	NA	24	1738	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	28.7476375840984	1	87	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGTAAGAGGGAAAGCTC	8141	False	NA	NA	False	NA	NA	NA	113054623	113096630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_113054674_113055342_113055429_113081895_113082083_113082877_113083103_113086384_113086578_113086845_113086952_113087334_113087487_113087826_113087886_113088318_113088498_113091804_113092048_113092488_113092638_113092965_113093084_113093740_113093851_113094359_113094579_113095218_113095306_113096376
102821	chr14	+	1254	8	NNC	ENSMUSG00000021771.15	novel	1954	10	NA	NA	-8	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1112.06608598223	1	53	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGCCATGGTGTGCATGT	NA	False	NA	NA	False	NA	NA	NA	21881625	21895582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21881736_21881918_21881978_21882951_21883021_21887770_21887965_21888058_21888112_21888458_21888678_21890486_21890638_21895183
102822	chr1	+	3095	23	Antisense	novelGene_ENSMUSG00000026219.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	61	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTCTAACAGAGCTAAAGGA	NA	False	NA	NA	False	NA	NA	NA	84720891	84754121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84720939_84721534_84721740_84722397_84722472_84722732_84722907_84724898_84725056_84726883_84727079_84728084_84728219_84729259_84729435_84729600_84729699_84731989_84732202_84735141_84735257_84735442_84735670_84736692_84736848_84738482_84738647_84738735_84738837_84739577_84739751_84739839_84739908_84741047_84741210_84741558_84741653_84743700_84743797_84743879_84743916_84746303_84746451_84754035
102823	chr9	-	569	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	-40	-57	-40	57	mono-exon	FALSE	NA	NA	NA	NA	NA	7	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGACTGGGGGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	115870172	115869603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_115869600_115870200
102824	chr17	+	1683	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	32	24	0	3	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	2	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACCGTGTCTGTGGTGTCT	NA	False	NA	NA	False	NA	NA	NA	35460753	35472659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
102825	chr5	-	2293	15	FSM	ENSMUSG00000036980.14	ENSMUST00000110936.8	2308	15	7	8	7	3	multi-exon	FALSE	canonical	3	12	junction_14	183.295568157341	1	91	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAAGTTTGTGAGCCTCCC	9939	False	NA	NA	False	NA	NA	NA	138185706	138176886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185652
102826	chr4	+	2766	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1876	multi-exon	TRUE	non_canonical	0	0	junction_1	40.1690870640043	2	74	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206906	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146291416_146291514_146368119_146368209_146384279_146384431_146388486_146388614_146390758_146390897_146391562_146392317_146392735_146393441_146552621
102827	chr1	-	6581	42	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	249	96	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_41	264.014139383045	1	107	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTAATTTTCTTTTCCGAG	8716	False	NA	NA	False	NA	NA	NA	84816203	84701888	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84792543_84792691_84816112
102828	chr11	-	1345	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	4	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
102830	chr4	-	2480	20	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	15	-818	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	334.597620832898	1	68	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCAGCACTCCCCCGAC	3	True	NA	NA	False	NA	NA	NA	41275101	41196010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199886_41201485_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211883_41216565_41216628_41229772_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
102831	chr11	-	3132	19	NNC	ENSMUSG00000020923.18	novel	3286	20	NA	NA	34	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	353.786942406421	1	185	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCGGCTGCCGTCTCTGT	9200	False	NA	NA	False	NA	NA	NA	102207467	102196817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_102197593_102197681_102197826_102197904_102197991_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200596_102200693_102200736_102201016_102201153_102201268_102201403_102201753_102201863_102202205_102202327_102202579_102202645_102204723_102204873_102204964_102205049_102205689_102205866_102207174
102832	chr2	+	1462	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11303	-137	multi-exon	FALSE	non_canonical	0	0	junction_1	0	86	29	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAACTCCCACTCTTCCA	NA	False	NA	NA	False	NA	NA	NA	11413731	11425894	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414601_11425301
102833	chr6	-	2376	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	184	-4	184	4	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	16	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTGGATTTGAATCTTAA	8669	False	NA	NA	False	NA	NA	NA	145021726	144944879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
102834	chr5	-	2120	2	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	924	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	16	24	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCATTTGTGTTGTTGG	NA	False	NA	NA	False	NA	NA	NA	125465326	125463035	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125463043_125463213
102835	chr5	-	2938	4	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	-6	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	436.049181731704	2	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATAGCGTTTAACTGCTG	NA	False	NA	NA	False	NA	NA	NA	135963459	135937240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938096_135938187_135939739_135940256_135940506_135963176
102836	chr11	-	1445	7	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	379	978	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	529.97916625719	1	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCTTCTGTCCCTTTC	NA	False	NA	NA	False	NA	NA	NA	97055847	97052357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97052695_97052755_97052799_97052894_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778
102837	chr6	+	524	1	Intergenic	novelGene_4180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATCTCATGATGATGGTA	NA	False	NA	NA	False	NA	NA	NA	66294437	66294961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_+_66294400_66295000
102838	chr11	-	2195	16	NNC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	290.517652934665	2	41	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTTTGCTTTACAATT	NA	False	NA	NA	False	NA	NA	NA	70860795	70833902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834812_70835333_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852471_70856592_70856659_70858673_70858844_70860474
102839	chr1	-	2826	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	53	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1008.66269564892	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGTGGACTTCATGCTTT	NA	False	NA	NA	False	NA	NA	NA	20890431	20873238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875137_20875505_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880287_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888120_20890377
102840	chr17	-	2393	10	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	1358	24	-331	-24	3prime_fragment	FALSE	canonical	3	9221	junction_4	1036.97658818531	3	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGAAGATGCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	45882839	45878724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
102841	chr4	-	689	6	NNC	ENSMUSG00000047675.16	novel	860	6	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5097.8579580055	2	23	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTGTCTAGGTGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	117013273	117011031	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_117011185_117011495_117011626_117011830_117012011_117012204_117012305_117012767_117012875_117013254
102842	chr5	-	3216	19	ISM	ENSMUSG00000106864.4	ENSMUST00000202639.4	4200	21	5623	687	7	236	3prime_fragment	FALSE	canonical	3	165	junction_17	141.985349618096	3	91	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTGGGTGTTTGGA	NA	False	NA	NA	False	NA	NA	NA	31331838	31314551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575
102843	chr1	-	7342	28	NNC	ENSMUSG00000026193.16	novel	8315	46	NA	NA	-2902	-84	intron_retention	TRUE	canonical	0	0	junction_13	672.007991575056	1	148	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGTTGGTGATTATTTT	NA	False	NA	NA	False	NA	NA	NA	71666405	71624768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636907_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71643750_71644009_71644243_71645043_71645200_71645861_71646017_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71652921_71653195_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321
102844	chr17	-	2398	12	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	27	-6	intron_retention	FALSE	non_canonical	0	0	junction_2	3150.19722588657	13	40	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45884152	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879352_45879422_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
102845	chrM	-	2492	2	Antisense	novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	108	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGGCTAGGATTAGTTCA	1	True	NA	7	True	NA	NA	NA	3702	1110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1308_1407
102846	chr1	+	2846	18	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	-2460	-22	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	702.135605353053	1	108	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATGAACTAATTGTATTT	NA	False	NA	109	True	NA	NA	NA	185129394	185160535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152327_185152485_185156507_185156587_185160048_185160114_185160193
102847	chr7	-	4056	10	NNC	ENSMUSG00000025507.14	novel	3653	15	NA	NA	0	-9	intron_retention	FALSE	canonical	0	0	junction_7	23.6538828279736	3	116	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTGTGTGAGACAGA	NA	False	NA	NA	False	NA	NA	NA	141023269	141018046	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141019405_141019483_141019603_141019704_141019967_141020066_141020280_141020370_141020519_141020598_141021015_141021085_141021223_141021381_141021443_141021524_141022478_141022880
102848	chr9	-	1659	8	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	53	-38	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	4936.65241446311	2	55	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTTTGAGACCATTAAAACA	7153	False	NA	NA	False	NA	NA	NA	78388953	78385768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387042_78387162_78387431_78387522_78387703_78387792_78387971_78388920
102849	chrX	-	1722	3	FSM	ENSMUSG00000031422.17	ENSMUST00000131923.2	828	3	593	-1487	593	-1	multi-exon	FALSE	canonical	3	2872	junction_1	225.5	2	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135640639	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_135635251_135636294_135636372_135640553
102850	chr17	+	1084	2	Intergenic	novelGene_80	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	28	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095194	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
102851	chr7	-	1331	9	NNC	ENSMUSG00000030695.17	novel	1549	10	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6691.12874913493	4	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398267	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395140_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
102852	chr5	+	2346	2	Genic_Genomic	ENSMUSG00000072612.4	novel	1233	1	NA	NA	-3354	-809	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	53	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGGAACTAGCTGCGGCAC	8646	False	NA	NA	False	NA	NA	NA	125463031	125466809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_125465332_125466763
102853	chr18	-	6272	34	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	-2	6313	intron_retention	FALSE	non_canonical	0	0	junction_1	538.692562383849	2	98	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGCACCGCGAACGGATT	NA	False	NA	NA	False	NA	NA	NA	34784777	34757690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767202_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769826_34770116_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
102854	chrM	-	481	2	Antisense	novelGene_ENSMUSG00000064367.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	16	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCCAGGCTATGAATGA	2812	False	NA	NA	False	NA	NA	NA	13376	12797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_13064_13161
102855	chr7	-	1359	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-14	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	8791.10984798706	2	32	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGGGAGTCTGTTGTTCA	NA	False	NA	NA	False	NA	NA	NA	126398327	126394413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396072_126396508_126396721_126396815_126396895_126398198
102856	chr5	-	1246	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-233	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	1	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATAAGAGACAACAT	8918	False	NA	NA	False	NA	NA	NA	142892480	142889488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890517_142890996_142891232_142891318_142891448_142892406
102857	chrX	+	2744	15	NNC	ENSMUSG00000031403.15	novel	2804	15	NA	NA	36	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	904.387990718089	2	122	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGAATTTGCTTTTCC	NA	False	NA	NA	False	NA	NA	NA	74139495	74153381	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144719_74146027_74146172_74147945_74148058_74149259_74149379_74149888_74149988_74150777_74150857_74151784_74151911_74152301
102858	chr5	+	2279	11	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	18	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1508.56623653057	2	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATAACAATATATTCTCGC	304	False	NA	NA	False	NA	NA	NA	77099171	77115343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099516_77099615_77099687_77104416_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494_77114634_77114689
102859	chr4	+	5115	2	Intergenic	novelGene_1883	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	25041	163	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820673	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66822782_66822828
102860	chr4	+	3340	4	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078497.10	novel	585	4	NA	NA	-22	2150	multi-exon	FALSE	non_canonical	0	0	junction_1	271.529003975634	2	96	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGTTGACTTGGCTGTT	4088	False	NA	NA	False	NA	NA	NA	147314718	147477611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147469676_147469759_147472778_147472906_147474654
102863	chr10	-	771	1	FSM	ENSMUSG00000069540.5	ENSMUST00000092231.4	397	1	-361	-13	24	13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTATTTTCTGTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	88566939	88566168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_88566200_88566900
102865	chr3	+	2088	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1167.56215584229	1	102	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986981	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993754_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
102866	chr4	+	3079	5	Intergenic	novelGene_2073	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_4	43.6520331714343	2	72	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146365169	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146384326_146384431_146388486_146388614_146390758_146392796_146392839
102867	chr4	-	2600	3	Antisense	novelGene_ENSMUSG00000066009.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTGGAACTTCCTGTCAC	NA	False	NA	NA	False	NA	NA	NA	146063068	146033862	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146034014_146054372_146054477_146060723
102868	chr15	+	2992	3	Intergenic	novelGene_3246	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	50	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCAAAATCACCAACGAGAA	NA	False	NA	NA	False	NA	NA	NA	22700903	22704980	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22701313_22702305_22704582_22704673
102869	chr9	-	1316	7	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	-2	-47	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5071.87617050031	2	38	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCACAGAATTTTGAGACC	8134	False	NA	-46	True	NA	NA	NA	78387972	78385777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78385879_78386324_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
102870	chr17	-	779	3	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4301	18	766	-18	3prime_fragment	FALSE	canonical	3	10930	junction_2	637.5	1	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	-83	True	NA	NA	NA	45879896	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783
102871	chr2	+	1105	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11386	45	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACACTGAGAGCAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	11413648	11426076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414308_11425630
102872	chr4	+	3002	9	Fusion	ENSMUSG00000086147.3_ENSMUSG00000065999.14	novel	2295	5	NA	NA	-2	-11	multi-exon	TRUE	non_canonical	0	0	junction_1	30.0954211633597	2	55	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCAACAAGTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	147056430	147669644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147217320_147217441_147536170_147536264_147639766_147639863_147661528_147661587_147665698_147665910_147666954_147667445_147667771_147668512_147668594
102874	chr4	+	3241	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000070605.5	novel	314	3	NA	NA	-2	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	9.44667504582896	3	85	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146033879	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146033904_146206938_146207223_146207708_146207846_146209452_146209546_146225375_146225469_146289386_146289518_146368114_146368209_146384369_146384431_146390758_146390910_146391325_146392124_146392292_146393458_146552638
102875	chr6	-	2435	22	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	324.439673962381	4	47	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3043	False	NA	NA	False	NA	NA	NA	71885739	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866327_71866350_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878296_71880395_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
102876	chr4	+	2229	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-91	5	multi-exon	FALSE	non_canonical	0	0	junction_3	34.6971020243606	3	56	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGTTGTTTTCAATTTA	NA	False	NA	NA	False	NA	NA	NA	147209621	147669660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536264_147581613_147581681_147661528_147661584_147665698_147665826_147668030
102877	chr6	-	3508	12	ISM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	1930	19	60	0	3prime_fragment	FALSE	canonical	3	372	junction_9	204.603870446414	3	50	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGAAAGTTGGCCTCCAT	NA	False	NA	NA	False	NA	NA	NA	122312044	122294708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931
102878	chr4	-	3198	19	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	1627	-123	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	119.202092636366	1	116	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAACTGTGAATGCG	3177	False	NA	NA	False	NA	NA	NA	41121127	41114549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120374_41120537_41120640_41120731_41120783_41121006
102879	chr11	-	1176	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-101	-73	101	mono-exon	FALSE	NA	NA	NA	NA	NA	14	19	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCCCCATAATAACAGGAG	4388	False	NA	NA	False	NA	NA	NA	20286086	20284910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284900_20286100
102880	chr4	+	2624	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-6	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0169885798519	5	59	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206894	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146291416_146291510_146365127_146365220_146388486_146388614_146390758_146390897_146391562_146392337_146392757_146393441_146552621
102881	chr4	+	3693	6	Intergenic	novelGene_2114	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	186.8	1	101	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146800396	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146800518_146802050_146802441_146802755_146803176_146803343_146803978_146804076_146805737_146805866
102882	chr4	+	2484	10	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.314269680527354	9	14	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGGGCTGGATGTCCTCT	NA	False	NA	NA	False	NA	NA	NA	135047804	135065283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135048765_135049599_135049811_135051224_135051420_135052128_135052589_135054399_135054535_135056314_135056356_135056682_135056831_135059034_135059122_135059471_135059550_135065114
102883	chr18	-	2286	20	Antisense	novelGene_ENSMUSG00000038299.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAGTGCGTGCCAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	32996073	32970408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_32970610_32972482_32972513_32974095_32974195_32974947_32975066_32976812_32976948_32978643_32978696_32979879_32980014_32980192_32980370_32980640_32980763_32981348_32981414_32982124_32982210_32983436_32983589_32985033_32985145_32985533_32985701_32985913_32986028_32987834_32987906_32992268_32992380_32994078_32994175_32994551_32994704_32995979
102884	chr2	-	2586	7	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	96	multi-exon	FALSE	canonical	0	0	junction_1	62.8640508469577	1	47	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	156681710	156631635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
102885	chr5	+	2943	19	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	37	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCACAGAGATACAGCAACG	NA	False	NA	NA	False	NA	NA	NA	31314897	31331840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315488_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317039_31317206_31317291_31317436_31323228_31323358_31323634_31323733_31325041_31325148_31325331_31325444_31325592_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31330728_31330855_31331110_31331436_31331577
102886	chr17	+	1130	2	Intergenic	novelGene_77	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	142	70	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCCCCCCCCCCCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	23095194	23096699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095867_23096241
102887	chr17	-	585	2	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4790	18	1255	-18	3prime_fragment	FALSE	canonical	3	12205	junction_1	0	1	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	NA	False	NA	NA	NA	45879407	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154
102888	chr17	+	1076	2	Intergenic	novelGene_94	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	59	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095202	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
102889	chr5	-	1260	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	32	628	0	-242	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	2	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAGAAAAAAAAAAAATAAG	8921	False	NA	NA	False	NA	NA	NA	142892477	142889497	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
102890	chr14	+	1824	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	3	1272	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	2	56	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCAGGGTGCACGGTT	NA	False	NA	NA	False	NA	NA	NA	63359965	63380584	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63379933_63380008
102892	chr4	+	1986	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000078496.10_ENSMUSG00000065999.14_ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	3993	5	NA	NA	1489	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	179.339231625431	3	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	3800	False	NA	NA	False	NA	NA	NA	147107823	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147107913_147219028_147219152_147337742_147337859_147413438_147413566_147596801_147597042_147668359
102893	chr11	+	2677	8	NNC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	37	797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	176.874451033979	1	115	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGATCCTGTTTGAATC	8531	False	NA	NA	False	NA	NA	NA	74661692	74709517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664346_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74687074_74707695_74707870_74707984
102894	chr3	-	3353	29	NNC	ENSMUSG00000042520.17	novel	3509	29	NA	NA	0	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	314.506456570433	1	73	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCACCTTAATGTGCTAATA	3550	False	NA	NA	False	NA	NA	NA	89959779	89907441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89907561_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916555_89916600_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955082_89955207_89959761
102895	chr19	+	5003	6	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	22	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1344.56604151674	186	223	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGTCTCGTGGTGTTTTGG	1491	False	NA	NA	False	NA	NA	NA	44282536	44295301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286621_44288072_44288254_44289650_44289872_44291439
102896	chr15	-	2998	1	NIC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	12	-4	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	50	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	170	False	NA	NA	False	NA	NA	NA	98832307	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98829300_98832300
102897	chr2	-	1264	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-191	-73	191	mono-exon	FALSE	NA	NA	NA	NA	NA	19	44	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	NA	False	NA	NA	False	NA	NA	NA	28824694	28823430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
102898	chr4	+	2568	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-8	-1902	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0169885798519	7	60	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146206892	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207841_146291416_146291510_146384369_146384435_146388486_146388614_146390758_146390897_146391562_146392337_146392757_146393429_146552609
102900	chr1	+	2849	19	NNC	ENSMUSG00000026615.15	novel	4906	32	NA	NA	6564	3277	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	661.474720269456	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCGAACTCGGGAGTTC	NA	False	NA	NA	False	NA	NA	NA	185106357	185145673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_185106410_185110971_185111099_185111741_185111935_185116962_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645
102901	chr3	-	322	1	Antisense	novelGene_ENSMUSG00000105388.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGGCGGGTTTTAGGCA	NA	False	NA	NA	False	NA	NA	NA	145585126	145584804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_145584800_145585100
102902	chr4	+	2874	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4887	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	74	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	147395017	147418188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147398491_147398574_147400350_147400439_147409227_147409339_147415724
102903	chr2	-	3672	17	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	18	-220	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	457.53522746888	1	150	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCCTTTTGTAAACTTTT	NA	False	NA	NA	False	NA	NA	NA	103627300	103595582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597200_103599102_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
102904	chr6	+	1810	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	546	85	8	-85	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	705	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGTTTTTCATAAACAT	5156	False	NA	NA	False	NA	NA	NA	85429041	85445372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
102905	chr19	-	1738	12	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	47	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	978.305441664352	3	37	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACGGTCTCCAGTGACTT	3810	False	NA	NA	False	NA	NA	NA	7017288	6998070	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003751_7006567_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
102906	chr18	+	2809	5	FSM	ENSMUSG00000024317.16	ENSMUST00000234545.2	1769	5	-201	-839	-14	0	multi-exon	FALSE	canonical	3	50	junction_3	174.891930917353	3	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	21134950	21161281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21159142
102907	chr14	+	1370	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	85	467	-12	-467	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	1	46	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCAGATGGCTCTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	4198713	4201406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
102908	chr17	+	3075	5	Antisense	novelGene_ENSMUSG00000024165.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	107	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCGGGAGAGCGCGCAC	1458	False	NA	NA	False	NA	NA	NA	25161134	25179412	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_25163655_25164560_25164613_25167619_25167749_25174984_25175139_25179192
102909	chr11	+	4144	26	NNC	ENSMUSG00000020290.15	novel	6004	25	NA	NA	-72	471	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	589.829738144831	1	118	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTACACAGTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	23205968	23246704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_23206031_23206450_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227039_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
102910	chrX	-	1780	13	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCTGCACCCACCTAAGAA	NA	False	NA	NA	False	NA	NA	NA	20548777	20539067	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20539209_20541822_20541999_20542125_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548251_20548349_20548450_20548612
102911	chr7	-	3746	23	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	1733.69513891882	1057	59	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGTTGTACATGACT	NA	False	NA	NA	False	NA	NA	NA	110682213	110671141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671798_110671838_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679526_110680100_110680172_110680713_110680841_110681991
102912	chr17	+	1291	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	40	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1643.28320368097	2	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3076	False	NA	NA	False	NA	NA	NA	35816954	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817377_35819999_35820097_35820304_35820436_35820877_35821041_35821184
102913	chr11	+	1815	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	5	-73	-5	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	50	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATCCTCTTGTTGTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
102914	chr8	-	4948	1	Genic_Genomic	ENSMUSG00000052488.8	novel	NA	NA	NA	NA	2898	3	mono-exon	FALSE	NA	NA	NA	NA	NA	2	198	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTCCTCTAGCTGTGGA	NA	False	NA	NA	False	NA	NA	NA	73219277	73214329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr8_-_73214300_73219300
102915	chr2	+	1074	7	NIC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	246	13	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	6186.29495111753	2	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGAATCTCCGTTTCTGT	NA	False	NA	NA	False	NA	NA	NA	29952110	29961143	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_29952293_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
102916	chr16	-	564	1	Intergenic	novelGene_3722	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102917	chr13	+	1116	2	Fusion	ENSMUSG00000062382.10_ENSMUSG00000076033.3	novel	491	4	NA	NA	-13	35446	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	31	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAGAAAGAAATGCAGGTA	7949	False	NA	NA	False	NA	NA	NA	74554514	74590911	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_74555433_74590713
102918	chr16	+	564	1	Intergenic	novelGene_3723	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	6	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
102919	chr4	+	2640	9	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	2762	6	NA	NA	5	1	multi-exon	FALSE	non_canonical	0	0	junction_1	18.6865593408739	2	44	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	2382	False	NA	NA	False	NA	NA	NA	147445772	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147445910_147575087_147575217_147578832_147578926_147637751_147637884_147639766_147639908_147661528_147661587_147667290_147667445_147667771_147668058_147668146
102920	chr10	+	2857	10	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGGCGTTGATGTGATTA	NA	False	NA	NA	False	NA	NA	NA	62648427	62674926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652251_62654718_62654816_62655250_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955
102921	chr7	-	615	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	53	-43	53	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	92828799	92828184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92828200_92828800
102922	chr2	+	1677	13	NNC	ENSMUSG00000026914.16	novel	1541	12	NA	NA	-1053	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	560.650137241479	356	4	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	7494	False	NA	NA	False	NA	NA	NA	61540984	61630720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_61541207_61542123_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
102923	chr18	-	1577	10	Antisense	novelGene_ENSMUSG00000024576.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	69	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCAGTTTGTATTTTCCA	5227	False	NA	NA	False	NA	NA	NA	61721125	61688882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_61688943_61689571_61689680_61701333_61701459_61702531_61702631_61708477_61708575_61709517_61709667_61710264_61710321_61711739_61711837_61713401_61713557_61720494
102924	chrM	+	2074	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	0	-250	0	250	mono-exon	FALSE	NA	NA	NA	NA	NA	1	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAGATCCCCAAGTCTCTG	-4	True	NA	4	True	NA	NA	NA	11741	13815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11700_13800
102926	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	20	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
102928	chr4	+	1968	6	Fusion	ENSMUSG00000078498.6_ENSMUSG00000067919.9_ENSMUSG00000067916.10_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-2	182328	multi-exon	TRUE	non_canonical	0	0	junction_1	199.2	4	40	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147056430	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056568_147107818_147107889_147263611_147263751_147416357_147416967_147417387_147418091_147600209
102929	chr17	-	2799	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-4	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	182.126939858501	1	111	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGAGTGTAGCCTTTTGTT	2376	False	NA	NA	False	NA	NA	NA	45744471	45702813	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724188_45726501_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
102930	chr2	+	3015	21	NNC	ENSMUSG00000026775.10	novel	4707	19	NA	NA	-18	-1543	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	317.929253136606	1	122	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATCTGTATAATTACATTG	7204	False	NA	NA	False	NA	NA	NA	23046511	23087729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_23046744_23050203_23050336_23052512_23052676_23053988_23054077_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077859_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899_23087039_23087148
102931	chr1	+	2382	16	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCGAAGCGCCAATAAGACAT	NA	False	NA	NA	False	NA	NA	NA	20873411	20888131	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873878_20875039_20875132_20875486_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880465_20882198_20882397_20882786_20882915_20883178_20883349_20884633_20884737_20884915_20884942_20886911_20887003_20887465_20887676_20888016
102933	chr2	+	2688	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	578	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	428.914391872732	1	108	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACTAGAGTGGATGCCC	1239	False	NA	NA	False	NA	NA	NA	26279945	26287126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26286094_26286440
102934	chr4	+	2093	5	Intergenic	novelGene_2082	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_4	43.6520331714343	8	34	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146370034	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146384326_146384431_146388486_146388614_146390758_146392091_146393159
102935	chr15	+	1805	4	NNC	ENSMUSG00000042406.9	novel	1725	3	NA	NA	-132961	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	630.303630535845	23653	89	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	80006423	80141742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_80006820_80139700_80139887_80140407_80140723_80140834
102937	chr4	-	2029	6	Antisense	novelGene_ENSMUSG00000070605.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	45	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATACTAGGCACTAGTC	NA	False	NA	NA	False	NA	NA	NA	146552847	146206971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146207176_146223660_146223705_146390794_146390903_146391652_146392409_146392749_146393427_146552607
102938	chr4	+	3067	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-4	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	45.1703373354683	1	53	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206896	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146291416_146291510_146312913_146312972_146388486_146388614_146390758_146390897_146391307_146392628_146392797_146393411_146552593
102939	chr10	-	1429	8	NNC	ENSMUSG00000061904.13	novel	1612	8	NA	NA	-10	4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1852.60849746998	1	57	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTATTCCTGATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	90959829	90952665	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955605_90957684_90957906_90959419_90959569_90959773
102940	chr17	+	1096	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	43	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1751.13484632109	1	48	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3079	False	NA	NA	False	NA	NA	NA	35816957	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821001_35821364
102941	chr9	+	689	5	ISM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	106	1480	6	-123	5prime_fragment	FALSE	canonical	3	2998	junction_3	862.728629118102	4	19	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGAGGTAAGGCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	119956860	119959955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833
102942	chr11	+	477	1	Intergenic	novelGene_2505	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	3	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCGGATGCCTGCATGAG	NA	False	NA	NA	False	NA	NA	NA	108902471	108902948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902500_108902900
102943	chr9	+	4917	27	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	0	-276	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	573.004989032051	1	134	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCCCAACAAATGAAACAC	NA	False	NA	NA	False	NA	NA	NA	72569719	72656858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569911_72584586_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
102944	chr5	-	2187	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	171	260	-159	multi-exon	FALSE	canonical	3	916	junction_1	0	3	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGTCAAACAGGAAGACAGAC	NA	False	NA	NA	False	NA	NA	NA	125466818	125463199	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
102945	chr14	+	1597	11	ISM	ENSMUSG00000021957.8	ENSMUST00000225857.2	1962	14	3022	4	941	-4	3prime_fragment	FALSE	canonical	3	1879	junction_3	145.587808555524	2	43	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30282587	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
102946	chr11	+	1760	6	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-22	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4268.40042170366	1	55	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3061	False	NA	NA	False	NA	NA	NA	75623764	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650249_75655442
102947	chr17	-	1644	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-14	797	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4037.90436829551	2	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATGTCTCCTTTCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	36149123	36145699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146511_36146553_36146932_36147054_36147166_36147519_36147629_36148888
102948	chr6	+	1120	1	FSM	ENSMUSG00000080242.6	ENSMUST00000122373.2	465	1	-111	-544	-111	544	mono-exon	FALSE	NA	NA	NA	NA	NA	62793	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	37782909	37784029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_37782900_37784000
102949	chr9	-	1311	9	Antisense	novelGene_ENSMUSG00000064514.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.65359456941537	2	69	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGGAAGGAATAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	64085784	64082104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_64082280_64082474_64082581_64082863_64083013_64083385_64083498_64084220_64084360_64084609_64084762_64085007_64085086_64085177_64085301_64085507
102950	chr9	+	2362	12	Antisense	novelGene_ENSMUSG00000032400.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCATTGCTAAGAAGTTAA	NA	False	NA	NA	False	NA	NA	NA	64056437	64080167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_64056708_64057435_64057589_64060166_64060244_64060829_64060932_64062444_64063391_64068036_64068254_64068654_64068724_64069845_64070025_64071614_64071746_64072642_64072740_64075893_64075946_64080098
102952	chr17	-	634	4	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	851	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5477.75856431158	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCTCCTTGTAACACTC	NA	False	NA	2	True	NA	NA	NA	45879811	45878696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879251_45879332_45879489_45879783
102953	chr9	+	741	5	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1445	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8718.66779889565	2	21	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64082119	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082202_64084602_64084760_64085002_64085087_64085178_64085300_64085504
102954	chrX	-	1749	13	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	31	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCTGCACCCACCTAAGA	NA	False	NA	NA	False	NA	NA	NA	20548755	20539068	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20539209_20541822_20541991_20542115_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
102955	chr3	-	1644	13	NNC	ENSMUSG00000068922.15	novel	1875	14	NA	NA	-4	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	206.295230730674	1	85	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGAACCCAGTGTGTAGG	NA	False	NA	NA	False	NA	NA	NA	88821193	88816955	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820172_88820235_88820873_88821010_88821099
102956	chr15	-	3215	1	Intergenic	novelGene_3233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	103	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGTGGTGTATGACCGTG	1909	False	NA	NA	False	NA	NA	NA	22703100	22699885	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22699900_22703100
102957	chr5	+	1687	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	139	9	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAAGGGAACAGCCTTC	NA	False	NA	NA	False	NA	NA	NA	142888871	142891232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993
102959	chr2	-	3960	5	Intergenic	novelGene_2848	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	194	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTTACAGAAAGGAGCTT	NA	False	NA	NA	False	NA	NA	NA	177258872	177156551	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_-_177156641_177198700_177198823_177200248_177200647_177200731_177204020_177258809
102960	chrX	-	525	5	Antisense	novelGene_ENSMUSG00000079435.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGCTCAGCACAGCGCCC	NA	False	NA	NA	False	NA	NA	NA	133488801	133486344	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_133486467_133486823_133486938_133487273_133487326_133488201_133488321_133488683
102961	chr4	-	951	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	123	-72	-123	mono-exon	FALSE	NA	NA	NA	NA	NA	12	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCCGGGGCTGGCATTGC	NA	False	NA	NA	False	NA	NA	NA	91740978	91740027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91740000_91741000
102962	chr8	+	3139	9	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-33	-11	intron_retention	FALSE	canonical	0	0	junction_3	343.645802389612	4	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAAACTGTTGTGAGGCT	5016	False	NA	NA	False	NA	NA	NA	107329949	107396867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375722_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
102963	chrUn_MU069435v1	-	524	1	Intergenic	novelGene_4733	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	524	0	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_MU069435v1_-_0_500
102964	chr15	-	1640	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	129	84	65	-84	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	2748	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601821	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
102965	chr9	-	2097	12	NNC	ENSMUSG00000032423.13	novel	3404	12	NA	NA	9	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	329.12704472627	1	93	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTTTAAAAAATCTGCT	NA	False	NA	NA	False	NA	NA	NA	88364240	88336006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_88336346_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346733_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
102966	chr14	+	6865	18	NNC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	61.0527595311365	2	211	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCGTGTCCTGTCATG	NA	False	NA	NA	False	NA	NA	NA	21531501	21722201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21674900_21674957_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687614_21687709_21710810_21711037_21711500_21711656_21712225_21712535_21714524_21714817_21718398_21720654_21720698
102967	chr3	+	967	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	102	0	-2	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	137570349	137572683	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
102968	chr11	-	1218	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	121	4	-75	-4	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	2	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGCCCCCAACTCAGTTG	6392	False	NA	NA	False	NA	NA	NA	69812091	69807549	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
102970	chr4	-	1974	6	NNC	ENSMUSG00000028435.9	novel	1765	6	NA	NA	-220	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	781.26932616096	1	54	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGGAACTTCTTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	41098403	41092729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098004
102971	chr17	+	3564	16	NIC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	3	351	intron_retention	FALSE	canonical	3	348	junction_6	517.760974453142	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCCTGCGATTTATTG	502	False	NA	NA	False	NA	NA	NA	56610402	56629690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
102972	chr16	-	564	1	Intergenic	novelGene_3724	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	12	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
102973	chr12	+	1848	6	NNC	ENSMUSG00000097055.3	novel	1431	4	NA	NA	-26994	-1484	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	94	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTTTGATCTGCTTTGGG	NA	False	NA	NA	False	NA	NA	NA	21440329	21467537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_21441417_21444965_21445065_21446273_21446449_21448243_21448365_21466797_21467130_21467503
102975	chr6	-	3158	12	NNC	ENSMUSG00000030254.17	novel	2577	14	NA	NA	6	-387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	91.7104678722956	1	187	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTATTTTTGTCCAACC	NA	False	NA	NA	False	NA	NA	NA	112673588	112603762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_112605486_112621548_112621709_112626555_112626799_112642238_112642295_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663699_112663748_112664937_112665000_112670429_112670512_112673504
102976	chr1	+	3376	14	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	1	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	129.150249640674	1	72	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAACCACAAGTATAC	NA	False	NA	NA	False	NA	NA	NA	132405144	132433389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132412465_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424641_132424720_132424767_132425667_132425746_132431501
102977	chr5	-	1711	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-30	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	5	29	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGAGGCCTCCCTTTTTT	8921	False	NA	NA	False	NA	NA	NA	142892477	142889018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890506_142890987_142891232_142891318_142891448_142892406
102978	chr2	-	1092	3	Genic_Genomic	ENSMUSG00000081484.2_ENSMUSG00000087701.5	novel	493	1	NA	NA	-46	51	multi-exon	FALSE	non_canonical	0	0	junction_1	0	306	31	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCGACTGGAGCAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51761676	51707865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_51708097_51708445_51708544_51760913
102979	chr4	-	2321	6	Antisense	novelGene_ENSMUSG00000065999.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	58	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAGAAGGCTGGAATCGC	NA	False	NA	NA	False	NA	NA	NA	147669601	147637744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147637882_147646896_147646976_147661479_147661596_147665727_147665825_147667289_147668011_147668430
102980	chr15	-	1794	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-113	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCATGAGTCTCAGTGG	645	False	NA	NA	False	NA	NA	NA	36793876	36771016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771211_36772264_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
102981	chr18	+	1744	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	4	-1	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	6	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
102983	chr17	+	2238	10	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAATGAAAGAATTACTAC	NA	False	NA	NA	False	NA	NA	NA	45878762	45882839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45879478_45879772_45880051_45880163_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45882006_45882107_45882339_45882548_45882748
102984	chr6	-	1204	8	Antisense	novelGene_ENSMUSG00000036371.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGCCGAAGCCTTCCTGTA	6391	False	NA	NA	False	NA	NA	NA	67261020	67244113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_67244391_67248178_67248330_67248867_67249012_67249122_67249213_67249847_67249924_67254751_67254924_67258636_67258807_67260896
102985	chr15	-	1493	10	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-53	396	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1235.63995515095	2	92	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTGGACATACGGTTC	NA	False	NA	NA	False	NA	NA	NA	81283848	81249254	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81255658_81255776_81259004_81259108_81261894_81261998_81262116_81262202_81267176_81267248_81272530_81272602_81273851_81273964_81283685
102987	chr11	+	1714	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-73	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1053.90480278502	100	32	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAACCTCATCCTCTTGT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280213	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279838_52279932
102988	chr5	-	2350	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	8	260	4	multi-exon	FALSE	canonical	3	916	junction_1	0	28	57	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTCATTTGTGTTGTTG	NA	False	NA	NA	False	NA	NA	NA	125466818	125463036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
102989	chr4	-	2184	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-28437	63754	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.834128686216	1	71	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	NA	False	NA	NA	False	NA	NA	NA	147022484	146912398	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913056_146914066_146914284_146976159_146976394_146976977_146977116_146978205_146978333_146982168_146982279_147021745_147022236_147022273
102990	chr4	+	3653	13	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-18	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	35.8492212839647	2	79	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206882	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146209452_146209546_146289387_146289519_146291416_146291510_146365127_146365259_146368115_146368239_146384279_146384431_146388486_146388614_146390758_146390904_146391317_146392628_146392795_146393458_146552638
102991	chr12	-	2676	11	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-20	-81	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	5419.53329079174	3	86	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGCAAGGCTTGTGAATG	NA	False	NA	NA	False	NA	NA	NA	110662743	110657542	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660462_110660778_110661004_110661139_110661485_110661853_110661952_110662106_110662685
102992	chr6	+	1726	5	NNC	ENSMUSG00000012396.13	novel	2211	4	NA	NA	47	-57	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1916.27573368239	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACCGATGCCAGCTGGA	NA	False	NA	NA	False	NA	NA	NA	122684573	122691535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100_122691101_122691481
102993	chr18	+	1673	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	6	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	8	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGTCCACCAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179719	48181437	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180398_48180442
102994	chr18	+	2119	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	346	6	83	-3	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	422	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGAAATGTGTCTTGGTTGA	NA	False	NA	NA	False	NA	NA	NA	77861774	77870563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
102995	chr17	-	2819	16	NNC	ENSMUSG00000023932.10	novel	3027	16	NA	NA	-5	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	180.691068462783	1	124	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTGTAGCCTTTTGTTT	2375	False	NA	NA	False	NA	NA	NA	45744472	45702812	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738950_45744311
102996	chr7	+	2700	24	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	379.091920660437	1	61	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2618	False	NA	NA	False	NA	NA	NA	13012749	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023368_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
102997	SIRV5	+	4412	19	NNC	SIRV5A	novel	1984	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3940.45502949928	3	41	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1019	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1992_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5427_5561_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
102998	chr11	+	2779	21	NNC	ENSMUSG00000020456.18	novel	4127	23	NA	NA	-7	-808	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	206.118624825609	1	52	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGTGCCACACCACCCC	NA	False	NA	NA	False	NA	NA	NA	6241658	6305770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_6241694_6246951_6247200_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296612_6296650_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
102999	chr5	-	906	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-72	1107	-72	-1107	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGCCAGTATTGAGATTGA	NA	False	NA	NA	False	NA	NA	NA	5833627	5832721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5832700_5833600
103000	chr4	+	2886	6	Intergenic	novelGene_2085	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	48.2534972825805	1	76	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146370744	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146371016_146384326_146384431_146388486_146388614_146390758_146391665_146392001_146392608_146392689
103001	chr4	+	2959	11	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6_ENSMUSG00000086147.3	novel	2295	5	NA	NA	0	182322	multi-exon	FALSE	non_canonical	0	0	junction_1	55.8225760781424	15	95	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTACAAGGTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	147056432	147600513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056568_147217303_147217441_147219028_147219122_147316807_147316984_147327755_147327819_147337800_147337859_147413438_147413566_147415724_147415863_147416278_147417258_147417341_147418058_147600176
103002	chr2	+	1199	2	ISM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	6396	-415	6318	415	3prime_fragment	FALSE	canonical	3	1201	junction_1	0	1	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTAATATTATGTTAATAT	NA	False	NA	NA	False	NA	NA	NA	174858429	174859820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_174858558_174858749
103003	chr15	-	2292	15	NNC	ENSMUSG00000023169.16	novel	7266	16	NA	NA	90	-260	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	208.443612989025	1	138	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTTTCATAAATAATTTG	NA	False	NA	NA	False	NA	NA	NA	96540704	96474127	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_96474694_96476410_96476489_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484888_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514026_96514099_96521836_96522051_96540377
103004	chrM	+	1195	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-246	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATATGTGAATATAGTTTA	43	False	NA	NA	False	NA	NA	NA	9920	11538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_10706_11128
103005	chr4	+	3146	10	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	2498	5	NA	NA	4	0	intron_retention	TRUE	non_canonical	0	0	junction_1	40.7606685269689	2	61	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	930	False	NA	NA	False	NA	NA	NA	145237364	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237410_145239538_145239640_145311773_145311905_145314001_145314095_145315865_145315978_145343687_145343746_145347100_145347255_145348721_145348867_145349274_145350588_145350921
103006	SIRV5	+	4186	18	NNC	SIRV5A	novel	2474	18	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3714.25983815466	1	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1027	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1985_2034_2119_2157_2270_2316_3298_3405_3483_3644_5410_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
103007	chr15	-	1559	10	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-79	406	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	804.871985833926	1	85	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACGGTTCCTGAAGTATC	NA	False	NA	NA	False	NA	NA	NA	81283874	81249244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81283596
103009	chr5	-	1726	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-4	intron_retention	TRUE	non_canonical	0	0	junction_1	1537.10969752397	54	35	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACAGCTTGTGGCTCTGTGG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889255_142889415_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
103010	chr5	+	1121	7	NIC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-23	-212	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	6007.96673870065	11	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGGTCTGGATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	115697572	115701574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_115697599_115697845_115697948_115698777_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
103011	chr19	+	3979	26	NIC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	17	3	combination_of_known_splicesites	FALSE	canonical	1	49	junction_23	671.529935594833	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTATTGGTCTCTGCTTT	683	False	NA	NA	False	NA	NA	NA	10583003	10607186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10605125_10605229_10605788_10605913_10606442
103012	chr6	-	1865	1	Intergenic	novelGene_4172	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	74	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGTGCTACTTCTGCACC	9852	False	NA	NA	False	NA	NA	NA	53443067	53441202	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_53441200_53443100
103013	chr19	+	696	1	Antisense	novelGene_ENSMUSG00000062456.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACATTTCTTTATGGAAGA	NA	False	NA	NA	False	NA	NA	NA	32443281	32443977	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_32443300_32444000
103014	chr3	+	2043	16	NNC	ENSMUSG00000027823.10	novel	8105	16	NA	NA	68	-5855	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	310.836691670866	1	40	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGAGTAATAAATGCTTT	NA	False	NA	NA	False	NA	NA	NA	63883594	63924145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_63883732_63887556_63887607_63889838_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
103015	chr13	+	3433	27	NNC	ENSMUSG00000021193.11	novel	899	5	NA	NA	511	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	264.899302627516	1	113	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCTGAGTTTTACTCAT	NA	False	NA	NA	False	NA	NA	NA	6598781	6630074	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598864_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617508_6618684_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
103016	chr13	-	680	1	Antisense	novelGene_ENSMUSG00000060198.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGCGCTGGCTGGAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	26677212	26676532	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_26676500_26677200
103017	chr7	-	833	7	FSM	ENSMUSG00000030744.14	ENSMUST00000032998.13	1908	7	84	991	-3	-5	multi-exon	FALSE	canonical	3	4974	junction_1	3419.39811549083	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACAAGGCCTGACTGGATTG	8419	False	NA	NA	False	NA	NA	NA	99132861	99128093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_99128159_99128480_99128678_99129082_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
103018	chr2	+	2936	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	177	1594	18	-1594	multi-exon	FALSE	canonical	3	665	junction_5	65.7463325738674	1	93	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTTCAGAACAACAATATTT	7250	False	NA	NA	False	NA	NA	NA	23046557	23087678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
103019	chr8	+	993	5	NNC	ENSMUSG00000054717.8	novel	2628	5	NA	NA	31	1279	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3346.47772852293	3	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGCATTGTGTTTGTATT	NA	False	NA	NA	False	NA	NA	NA	57964971	57967522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_57965040_57965695_57965783_57966095_57966242_57966329_57966499_57966999
103020	chr16	+	3100	10	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_3	639.697845340543	3	84	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6055	False	NA	NA	False	NA	NA	NA	22926509	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927566_22927895_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
103021	chrX	+	1091	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-19	138	-19	-138	mono-exon	FALSE	NA	NA	NA	NA	NA	10	34	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGGCCCTGGAGAAGATTGA	NA	False	NA	NA	False	NA	NA	NA	13068790	13069881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13069900
103022	chr7	+	1263	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-19	-12	-19	12	mono-exon	FALSE	NA	NA	NA	NA	NA	12	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	51396375	51397638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
103023	chr6	+	2161	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	19	-1224	19	-13	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	19	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTTTTCACAATGACTGG	NA	False	NA	NA	False	NA	NA	NA	117893960	117902567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
103024	chr15	+	2473	13	NNC	ENSMUSG00000022272.18	novel	5880	21	NA	NA	278	-13461	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	260.792848295773	1	123	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACGAGAAGATATTCAAAGA	107	False	NA	NA	False	NA	NA	NA	25753342	25800296	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25781043_25781951_25783003_25783128_25785888_25786133_25793236_25793333_25795768_25795863_25797284_25797341_25799496_25799640_25800126
103025	chr3	-	1045	7	NNC	ENSMUSG00000000563.18	novel	1604	8	NA	NA	62	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2269.39757057536	1	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTATAAGTTTCATACT	NA	False	NA	NA	False	NA	NA	NA	105866500	105850016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_105850390_105851011_105851183_105858906_105859025_105861333_105861498_105863211_105863353_105866173_105866215_105866463
103026	chr9	+	1400	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	8143.46660796627	30	75	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082100_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084599_64084760_64085002_64085087_64085178_64085300_64085504
103027	chr12	-	1255	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	471	2	-323	-2	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	169	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638301	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
103028	chr11	+	3896	25	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	307	-218	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	758.18700854773	2	88	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332509	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335808_72336008_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337811_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
103029	chr3	-	1736	3	Antisense	novelGene_ENSMUSG00000106053.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	74	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAACACCATCAGATCCT	NA	False	NA	NA	False	NA	NA	NA	158954720	158874681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_-_158875437_158942587_158942889_158954040
103030	chr1	-	2784	16	ISM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	2422	50	2370	-12	3prime_fragment	FALSE	canonical	3	2257	junction_11	177.06679216863	2	72	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACATGTGGACTTCATGC	NA	False	NA	NA	False	NA	NA	NA	20888114	20873241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016
103032	chr4	-	2766	2	Intergenic	novelGene_2145	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	51	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGGTAAGCAGAAGGCG	NA	False	NA	NA	False	NA	NA	NA	147574638	147571770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147572647_147572748
103034	chr4	+	2424	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	82.8322853723112	4	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146062305_146062784
103035	chr4	+	1619	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	75	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5215.34655631621	6	59	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGCAGAAGTCCACCAGT	NA	False	NA	NA	False	NA	NA	NA	150321774	150333315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331928_150332110_150332287_150332397_150332517_150332577_150332942
103036	chrX	-	5108	2	Intergenic	novelGene_4009	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	182	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGAAAGCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	116231727	116226546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116226808_116226880
103037	chr4	-	3968	7	Antisense	novelGene_ENSMUSG00000083704.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	142	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGGAATGGCGGAAATTCC	NA	False	NA	NA	False	NA	NA	NA	147145228	147056419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147056578_147058406_147058496_147115001_147115077_147136959_147137046_147140053_147140183_147141716_147143579_147143659
103038	chr5	+	1742	5	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGGCTTTGCACATGCCG	NA	False	NA	NA	False	NA	NA	NA	142888877	142891380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320
103039	chr5	-	881	5	ISM	ENSMUSG00000106864.4	ENSMUST00000202639.4	4200	21	20600	840	-136	83	3prime_fragment	FALSE	canonical	3	609	junction_2	21.8903517559677	1	40	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGGCTCCCCCTCCACAAC	NA	False	NA	NA	False	NA	NA	NA	31316861	31314704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777
103040	chr8	+	3363	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-1	-2103	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	990.585829554555	1	67	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAATACTTGGTGATGTC	NA	False	NA	NA	False	NA	NA	NA	111760546	111782193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760577_111760838_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779145_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
103042	chr11	+	3695	23	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	324	-229	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	764.437065335992	2	85	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGATGCTATATGACGCC	NA	False	NA	NA	False	NA	NA	NA	72332526	72342365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332552_72333545_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340827_72340921_72341451_72341601_72341702
103043	chr5	+	1680	5	Intergenic	novelGene_876	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	7	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGACAGGGTTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	142888871	142954662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891202_142954638
103044	chr5	-	1641	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-27	intron_retention	FALSE	non_canonical	0	0	junction_2	1650.86546998839	1	54	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGCACACCTTACCTTAC	8918	False	NA	NA	False	NA	NA	NA	142892480	142888896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890321_142890538_142890991_142891232_142891318_142891448_142892406
103045	chr4	+	2818	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	46	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.443251190051	1	86	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	972	False	NA	NA	False	NA	NA	NA	145237406	145265524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145239546_145239670_145257370_145257486_145261385_145261513_145263160
103046	chrUn_JH584304v1	+	3710	7	Intergenic	novelGene_4619	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	92	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTTGAAAAAAACTAATGA	NA	False	NA	NA	False	NA	NA	NA	52200	61453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_+_54478_54718_54868_55111_55704_56986_57145_58555_58836_59591_59776_61383
103047	chr4	+	2136	6	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1488	4	NA	NA	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_1	40.4	2	47	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576871	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577080_147578832_147578845_147665698_147665826_147667290_147667431_147667838_147668409_147668576
103048	chr8	-	1761	9	NNC	ENSMUSG00000003813.16	novel	1842	9	NA	NA	-1	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	568.40808403822	1	90	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGTTCATGCCTACTGG	NA	False	NA	NA	False	NA	NA	NA	85567271	85561555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_85562304_85562393_85562549_85564088_85564223_85564349_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
103049	chr5	+	827	6	ISM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	1022	274	94	1	3prime_fragment	FALSE	canonical	3	14010	junction_2	1238.46727853424	33	33	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121343565	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
103050	chr11	-	1504	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-263	1	at_least_one_novel_splicesite	FALSE	canonical	3	238	junction_6	7811.11681622204	22	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCAACTCAGTTGTTTAT	9678	False	NA	NA	False	NA	NA	NA	69812475	69807544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988_69812161_69812263
103051	chr9	+	1225	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1539	164	1521	-164	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	23	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATGTGGTGACAAACCC	NA	False	NA	NA	False	NA	NA	NA	64082195	64085784	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
103052	chr13	+	2781	5	Antisense	novelGene_ENSMUSG00000074830.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	95	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTAGAAAGGCACCCGG	NA	False	NA	NA	False	NA	NA	NA	66817020	66828871	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66819454_66820138_66820199_66821009_66821064_66821262_66821394_66828768
103053	chr15	-	1460	12	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	54	406	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	988.266275557837	3	60	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACGGTTCCTGAAGTATC	NA	False	NA	NA	False	NA	NA	NA	81283741	81249244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262003_81262116_81262187_81267176_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
103054	chr6	-	2290	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	131	135	131	-135	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	2	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAATTGTCTTATGTTT	8616	False	NA	NA	False	NA	NA	NA	145021779	144945018	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
103055	chr9	+	2025	8	ISM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	932	6	-426	-5	3prime_fragment	FALSE	canonical	3	3928	junction_2	6440.2006179932	1	62	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACCATACAGTTGTCCTGA	3099	False	NA	NA	False	NA	NA	NA	40713211	40716490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
103056	chr17	+	737	1	Intergenic	novelGene_222	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGAGAACCTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	40153899	40154636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40154600
103057	chr10	-	857	1	Intergenic	novelGene_3384	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	45	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGAAAGAGATGCCCATG	NA	False	NA	NA	False	NA	NA	NA	6405313	6404456	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_6404500_6405300
103058	chr6	-	2150	6	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	5	0	intron_retention	FALSE	canonical	3	1123	junction_1	286.017901537649	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	124942248	124935778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_124936601_124936761_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686
103059	chrX	-	3354	20	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	1.11648439134718	3	67	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAGCTCGGAAGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	20548204	20524659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20524765_20534686_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537929_20538073_20538206_20538384_20538479_20538588_20538673_20539210_20541828_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546054_20547472_20547743_20548144
103060	chr17	+	2089	1	Intergenic	novelGene_197	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	102	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCGTGGCGGTGTCTTGC	NA	False	NA	NA	False	NA	NA	NA	40153887	40155976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156000
103061	chr4	+	3401	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	9	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	205.595330686278	1	107	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	145397263	145431007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397412_145399301_145399395_145422720_145422806_145425813_145425941_145427474_145429276_145429860
103062	chr5	+	2350	2	Genic_Genomic	ENSMUSG00000072612.4	novel	1233	1	NA	NA	-3349	-800	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	44	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCGGCACGCCCGGCGT	8651	False	NA	NA	False	NA	NA	NA	125463036	125466818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_125465332_125466763
103063	chr11	-	4009	2	Intergenic	novelGene_2331	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	142	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACAAGACCGTTTTCTCGT	NA	False	NA	NA	False	NA	NA	NA	57450844	57445638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446931_57448127
103064	chr4	+	2068	4	Fusion	ENSMUSG00000082082.2_ENSMUSG00000085101.8	novel	375	3	NA	NA	-14299	772	multi-exon	FALSE	non_canonical	0	0	junction_3	40.7621829095984	1	55	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145159010	145178230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145159152_145160315_145160385_145176036_145176867_145177202
103065	chr7	+	1535	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	53	0	22	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	1	51	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	NA	False	NA	NA	NA	46495315	46505051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
103066	chr6	-	3976	1	Intergenic	novelGene_4210	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	71	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGTGGATCAAGGAACTT	NA	False	NA	NA	False	NA	NA	NA	95192763	95188787	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr6_-_95188800_95192800
103068	chr6	-	1728	8	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	881.756757610531	1	73	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	124942205	124935778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936593_124936756_124936914_124937053_124937160_124938120_124938324_124939320_124939400_124939584_124939661_124941686_124941892_124942117
103069	chr4	-	2757	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	51	63797	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	113.762731962948	2	107	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTC	NA	False	NA	NA	False	NA	NA	NA	146993933	146912355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913160_146913831_146914389_146976181_146977116_146978205_146978333_146982168_146982273_146983728_146983804_146991966_146992072_146993882
103070	chr4	+	1189	7	NNC	ENSMUSG00000062937.8	novel	2797	8	NA	NA	274	749	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	266.187120900567	4	20	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGTGAGGAGCTTACT	5322	False	NA	NA	False	NA	NA	NA	89055632	89098460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089466_89090381_89090476_89097909
103071	chr11	+	2184	12	Antisense	novelGene_ENSMUSG00002076984.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	61	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGACTCCCCCCACGCCCA	NA	False	NA	NA	False	NA	NA	NA	106672374	106679699	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_106673085_106673296_106673522_106674786_106674845_106674926_106674987_106675237_106675350_106675704_106675879_106675961_106676118_106676215_106676308_106677301_106677371_106677734_106677899_106679096_106679286_106679524
103072	chr4	+	2632	8	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242742	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	43.4506522813348	4	79	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147394991	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147536170_147536264_147538037_147538146_147541451_147541488_147661511_147661587_147665698_147665826_147667290_147667445_147667771
103073	chr7	-	599	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	69	-43	69	5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	92828783	92828184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_92828200_92828800
103074	chr4	+	2189	7	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242718	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.6404776212465	2	28	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395015	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147534439_147534577_147578832_147578927_147639766_147639854_147665698_147665826_147667290_147667445_147668191
103075	chr15	-	2236	15	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	2	-270	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	214.879285048273	1	82	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGTTGGCTGTCCTGTCT	NA	False	NA	NA	False	NA	NA	NA	81614079	81589081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594796_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
103076	chr3	-	3330	21	NNC	ENSMUSG00000002227.16	novel	3460	21	NA	NA	4	-85	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	294.099914994887	2	121	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGATCGAACCCAGAGCCT	NA	False	NA	NA	False	NA	NA	NA	104725613	104702236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725403_104725540
103077	chr11	-	3260	17	NIC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	-3946	-276	intron_retention	FALSE	canonical	3	385	junction_13	42.1720805154311	1	79	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATCGAGGCCAAGGGCCT	NA	False	NA	NA	False	NA	NA	NA	68889103	68879064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881986_68882163_68882320_68882510_68882595_68882681_68883237_68883480_68883613_68883741_68883865_68884122_68884285_68884391_68884454_68884633_68884791_68885083_68885158_68888489_68888619_68888738
103078	chr2	+	4673	5	NIC	ENSMUSG00000078875.11	novel	683	5	NA	NA	4	2785	combination_of_known_junctions	FALSE	canonical	3	46	junction_2	44.7178655572915	1	158	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	NA	False	NA	NA	NA	176692752	176707365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176703022
103079	chr7	+	1231	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-8	9	-8	-9	mono-exon	FALSE	NA	NA	NA	NA	NA	2	53	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCTGCACCCACAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396386	51397617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
103080	chr16	+	5117	1	Intergenic	novelGene_3636	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	186	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGAGTGAATGAATGAATG	NA	False	NA	NA	False	NA	NA	NA	31967040	31972157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_31967000_31972200
103082	chr7	-	1465	9	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-5	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	6725.38012750023	2	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGGGGGAGTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	126398347	126394416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398172
103083	chr10	-	2148	12	NNC	ENSMUSG00000025364.14	novel	2432	12	NA	NA	2164	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	600.338127865118	1	97	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGCTCACTGTTGTGTG	9772	False	NA	-112	True	NA	NA	NA	128399574	128393643	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128393889_128393968_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445
103084	chr16	-	4529	2	Antisense	novelGene_ENSMUSG00000075269.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	13	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAGAAGCAAGAGAGAGAGA	7932	False	NA	NA	False	NA	NA	NA	32019158	31967150	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_-_31967747_32015225
103085	chr11	-	1472	7	NNC	ENSMUSG00000078812.11	novel	1437	7	NA	NA	-263	-31	at_least_one_novel_splicesite	FALSE	canonical	3	238	junction_6	7811.11681622204	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCTGAATAAAACTACAAG	9678	False	NA	NA	False	NA	NA	NA	69812475	69807576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988_69812161_69812263
103086	chr5	+	2276	1	Antisense	novelGene_ENSMUSG00000008348.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTCTGTCACAAAATATACA	8664	False	NA	NA	False	NA	NA	NA	125463049	125465325	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_125463000_125465300
103087	chrM	+	703	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	420	422	420	-422	mono-exon	FALSE	NA	NA	NA	NA	NA	2	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATTTCCACTATGTTCTA	21	False	NA	58	True	NA	NA	NA	5747	6450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5700_6400
103088	chr11	+	1813	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	205	4	-70	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	513	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5336	False	NA	NA	False	NA	NA	NA	52251891	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103089	chr6	-	1863	11	NNC	ENSMUSG00000030357.11	novel	2217	10	NA	NA	17	-22	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1682.35336359518	1	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAATAAAGTGGAAACAACAA	9286	False	NA	NA	False	NA	NA	NA	128415623	128407087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_128407183_128407497_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
103091	chr12	+	1695	12	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	42	-49	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	2790.13676610193	1	88	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATGGCATACAAGTAT	NA	False	NA	NA	False	NA	NA	NA	24758281	24764096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760494_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763341_24763636_24763686_24763800
103093	chr17	+	2087	1	Intergenic	novelGene_216	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	87	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCCGTGGCGGTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	40153888	40155975	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40156000
103094	chr7	+	1263	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-19	-12	-19	12	mono-exon	FALSE	NA	NA	NA	NA	NA	3	39	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGAGGC	NA	False	NA	NA	False	NA	NA	NA	51396375	51397638	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
103095	chr13	-	450	1	Intergenic	novelGene_1356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGTTTTTATCATACT	NA	False	NA	NA	False	NA	NA	NA	45023497	45023047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_45023000_45023500
103096	chr4	-	2359	4	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	-81819	63796	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	3	137	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147075866	146912356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146912762_146976629_146976759_147073718_147075259_147075581
103097	chr11	-	1248	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-59	-187	-59	187	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGCC	4402	False	NA	NA	False	NA	NA	NA	20286072	20284824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
103098	chr11	+	1317	5	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	21	-275	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4732.78147604556	13	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCCAAATATATCATGCCT	3056	False	NA	NA	False	NA	NA	NA	75623759	75656396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647776_75655677
103099	chr15	-	2868	2	NNC	ENSMUSG00000023004.9	novel	526	2	NA	NA	12	-2	intron_retention	FALSE	non_canonical	0	0	junction_1	0	2	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	170	False	NA	NA	False	NA	NA	NA	98832307	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98829972_98830103
103100	chr17	+	1867	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	70	509	3	2	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	13069	4	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGGGTTCCTGTCCTCA	NA	False	NA	NA	False	NA	NA	NA	13135338	13143445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
103102	chr5	+	2141	18	ISM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	35956	2277	298	1589	3prime_fragment	FALSE	canonical	3	795	junction_6	135.801733150367	2	54	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAGAACCCCGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	75771531	75815105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
103103	chr4	+	2026	7	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-2	256529	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	79.3804132012425	2	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	146033879	146319720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146036303_146036397_146058453_146058581_146060726_146060865_146061698_146062221_146062389_146063094_146319415
103104	chr5	-	1129	4	NNC	ENSMUSG00000029580.15	novel	1242	5	NA	NA	528	38	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1976.76301058068	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATAAGTGGTTACAGGAA	4189	False	NA	NA	False	NA	NA	NA	142891048	142889217	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890506_142890987
103105	chr1	-	2864	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	21	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	645.204909311763	2	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTGTGTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	20890463	20873193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20886908_20887462_20887676_20888016_20888130_20890354
103106	chr13	-	2541	5	Antisense	novelGene_ENSMUSG00000074867.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	95	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAAGCTTTCAGCCTGCT	NA	False	NA	NA	False	NA	NA	NA	62385205	62367382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_62367437_62381052_62381192_62381373_62381442_62382772_62383439_62383591
103107	chr7	+	4882	21	Antisense	novelGene_ENSMUSG00000088948.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	143	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAACTTATCACTCTGAGG	NA	False	NA	NA	False	NA	NA	NA	110669943	110682231	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_110671967_110673037_110673157_110673243_110673457_110673546_110673752_110673886_110674149_110674239_110674448_110674542_110674649_110674793_110674920_110675902_110676061_110676141_110676283_110676430_110676533_110676617_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679528_110680104_110680172_110680713_110680838_110681989
103108	chr7	+	2523	2	Intergenic	novelGene_2885	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	60	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTAACTGTCTTGGCT	NA	False	NA	NA	False	NA	NA	NA	18431717	18438399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr7_+_18433978_18438136
103109	chr8	+	2712	18	NNC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-50477	-2429	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	116	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGAACTTCGATTTGGGA	NA	False	NA	NA	False	NA	NA	NA	96482894	96534400	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96482912_96483967_96484108_96486736_96486878_96487129_96487253_96487953_96488070_96489634_96489858_96491083_96491213_96491607_96491779_96496128_96496236_96496372_96496499_96497169_96497339_96498598_96498803_96500059_96500113_96500196_96500268_96501257_96501357_96501906_96502015_96515257_96515535_96533962
103110	chr16	+	1751	10	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	728.565273688426	2	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926565_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
103111	chr4	+	2516	5	Intergenic	novelGene_2080	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_4	43.6520331714343	1	29	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTTCAAAAGGAAACTATT	NA	False	NA	NA	False	NA	NA	NA	146370023	146393436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370163_146384326_146384431_146388486_146388614_146390758_146392430_146392961
103112	chr9	-	5123	28	Antisense	novelGene_ENSMUSG00000102411.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.566557723732531	1	96	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGAGCGCGCTGGGGTGCAG	6415	False	NA	NA	False	NA	NA	NA	72656900	72569725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_-_72569895_72577232_72577399_72578511_72578584_72584594_72584674_72584772_72584813_72593341_72593395_72616391_72616444_72617758_72617820_72619446_72619547_72625497_72625667_72628582_72628696_72628775_72628944_72632298_72632364_72633691_72633811_72638181_72638254_72638501_72638559_72638659_72638719_72639873_72639936_72642287_72642522_72643948_72644068_72644152_72644226_72646320_72646420_72646738_72646811_72647449_72647509_72648907_72648968_72649932_72650096_72653686_72653759_72654404
103113	chr13	+	2859	6	NNC	ENSMUSG00000113626.2	novel	419	3	NA	NA	-21020	462	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	29.0613144919496	1	124	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATGTGGTAAAAGCTTGT	NA	False	NA	NA	False	NA	NA	NA	61987609	62009951	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61987915_61988127_61988228_62005782_62005910_62006094_62006156_62007517_62009074_62009241
103116	SIRV5	+	1891	14	NNC	SIRV5A	novel	2029	16	NA	NA	-2	-3	intron_retention	FALSE	non_canonical	0	0	junction_2	3462.26863068219	4	36	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAGGTTTACCGCCAAAAA	NA	False	NA	NA	False	NA	NA	NA	1006	10986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_3340_3405_3483_3641_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
103117	chr5	+	1377	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	20	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGGGAACAGCCTTCTT	NA	False	NA	NA	False	NA	NA	NA	142888877	142891234	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889432_142889862_142890001_142890095_142890540_142890993
103118	chr11	+	1623	5	ISM	ENSMUSG00000037331.16	ENSMUST00000071487.13	6614	19	43563	2338	11014	-2338	3prime_fragment	FALSE	canonical	3	480	junction_4	85.6358569759187	1	106	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTTCCTTGAGCCTCCG	NA	False	NA	NA	False	NA	NA	NA	57943452	57950519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_57943558_57946292_57946438_57947879_57947990_57948086_57948215_57949384
103120	chr17	+	1242	5	NNC	ENSMUSG00000024406.17	novel	1362	5	NA	NA	48	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1798.31963232346	2	48	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTAGATAGCTGAATTTTG	3084	False	NA	NA	False	NA	NA	NA	35816962	35821662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_35817376_35820059_35820121_35820304_35820436_35820877_35821037_35821184
103121	chrM	-	1018	1	Antisense	novelGene_ENSMUSG00000064342.1_AS_novelGene_ENSMUSG00000064340.1_AS_novelGene_ENSMUSG00000064341.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	223	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTCTGCCACCCTAATAAC	9986	False	NA	-1	True	NA	NA	NA	3710	2692	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_2700_3700
103123	chr13	-	472	1	Intergenic	novelGene_1358	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	14	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAGTTTTTATCATACT	NA	False	NA	NA	False	NA	NA	NA	45023519	45023047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_45023000_45023500
103124	chr15	+	1523	9	Antisense	novelGene_ENSMUSG00000105167.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2844	38	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGACCAGGAGCCAGTGCA	NA	False	NA	NA	False	NA	NA	NA	79962001	79967553	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_79962092_79962179_79962633_79962910_79963010_79963890_79964051_79964565_79964754_79965096_79965232_79965814_79965987_79966591_79966789_79967524
103125	chr9	+	4497	21	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	45	-238	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1133.06442888302	1	133	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAAATGGTATTTGT	NA	False	NA	NA	False	NA	NA	NA	72569672	72656896	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577268_72625523_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646802_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72654430
103126	chr1	-	2898	18	Antisense	novelGene_ENSMUSG00000102970.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	83	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGATTTTTCCCTCCGCGC	9300	False	NA	NA	False	NA	NA	NA	191353817	191307886	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_191308062_191314508_191314640_191315289_191315409_191328396_191328483_191328996_191329126_191334360_191334473_191336916_191337052_191338230_191338329_191339929_191340171_191342474_191342614_191343968_191344176_191345125_191345320_191345748_191345855_191346690_191346758_191347810_191347948_191349926_191350009_191351694_191351892_191353274
103127	chr4	+	2777	6	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-20	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	80.9187246562871	2	118	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033847	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146036319_146036397_146054375_146054480_146058453_146058581_146060726_146061337_146061504
103128	chr4	+	3028	3	Intergenic	novelGene_2086	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	59	junction_1	31	2	79	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146384326	146393555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146384431_146388486_146388614_146390758
103129	chr11	-	3934	22	Antisense	novelGene_ENSMUSG00000020456.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0.42591770999996	1	96	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCCGCCCCGGCGTGTGG	NA	False	NA	NA	False	NA	NA	NA	6306570	6241632	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_6241699_6246955_6247145_6263800_6263976_6266971_6267080_6284531_6284647_6288555_6288709_6289104_6289253_6289834_6289927_6290440_6290619_6292492_6292622_6296512_6296692_6297094_6297249_6297826_6297929_6298230_6298362_6298655_6298803_6299093_6299227_6299313_6299488_6299841_6299914_6300605_6300725_6304894_6305090_6305287_6305443_6305550
103130	chr4	+	2910	7	NNC	ENSMUSG00000078502.11	novel	3595	4	NA	NA	221	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	43.3451906854216	3	149	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTTGTTTTCAATTTG	NA	False	NA	NA	False	NA	NA	NA	145311993	145351920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145312083_145314001_145314095_145315865_145315978_145347096_145347255_145348721_145348860_145349435_145350444_145350608
103131	chr1	-	3620	25	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9496	-2439	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	323.327681973807	1	72	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAAACATGGGGAAGGTT	NA	False	NA	NA	False	NA	NA	NA	84827733	84729378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84773410_84773537_84786677_84786754_84792543_84792691_84822070_84822113_84827643
103132	chr5	-	2031	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-6	-84	-6	84	mono-exon	FALSE	NA	NA	NA	NA	NA	14	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833561	5831530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
103133	chr4	+	4048	6	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-46120	2	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	257.798836304588	30	69	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTTTCAGTT	NA	False	NA	NA	False	NA	NA	NA	147060186	147145253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147060315_147107818_147107913_147115003_147115080_147136962_147137048_147140055_147140183_147141715
103134	chr8	-	3192	19	ISM	ENSMUSG00000036550.17	ENSMUST00000211887.2	8364	49	65453	685	-1829	13	3prime_fragment	FALSE	canonical	3	1077	junction_10	221.879847364889	1	100	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTGGGTTTGTGTAAAG	NA	False	NA	NA	False	NA	NA	NA	96468639	96446770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_-_96447114_96447270_96447406_96448133_96448267_96449912_96450094_96451143_96451294_96452642_96452817_96454210_96454313_96455242_96455361_96455711_96455876_96457040_96457290_96459719_96459952_96460606_96460777_96460868_96460978_96462313_96462457_96462881_96463074_96466435_96466556_96467357_96467463_96467556_96467698_96468408
103135	chr4	+	3505	10	Fusion	ENSMUSG00000086147.3_ENSMUSG00000078496.10	novel	1244	3	NA	NA	-1	2581	multi-exon	TRUE	non_canonical	0	0	junction_1	117.579077671892	1	102	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147056431	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056484_147216646_147216818_147217303_147217441_147447267_147447362_147578832_147578931_147591970_147592098_147595209_147595337_147596801_147597092_147597762_147599768_147600120
103136	chrX	+	4526	7	NNC	ENSMUSG00000055188.13	novel	839	3	NA	NA	-6451	-1989	intron_retention	FALSE	non_canonical	0	0	junction_1	0	21	67	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAGAACAGAGAGACTGCG	NA	False	NA	NA	False	NA	NA	NA	8005216	8011926	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_8009195_8009489_8009558_8009887_8009989_8010084_8010191_8010813_8010919_8011193_8011311_8011875
103137	chr19	+	2640	13	NNC	ENSMUSG00000024740.11	novel	4459	27	NA	NA	2919	-10	intron_retention	FALSE	canonical	0	0	junction_1	948.089687506175	1	23	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCTAAGAAGAAACTCTTAT	NA	False	NA	NA	False	NA	NA	NA	10599276	10607173	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_10599349_10599427_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10605023_10605125_10605229_10605788_10605913_10606442
103138	chr4	+	3031	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	15	-1901	multi-exon	TRUE	non_canonical	0	0	junction_2	38.7263268986581	2	93	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206915	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146207051_146207223_146291416_146291514_146368119_146368239_146384279_146384431_146388504_146388614_146390758_146390904_146391317_146392628_146392797_146393416_146552594
103139	chr4	+	1800	2	Genic_Genomic	ENSMUSG00000060989.9	novel	1119	1	NA	NA	-40	704	multi-exon	FALSE	canonical	0	0	junction_1	0	2	88	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTACCTTCAAATGAAA	8	False	NA	NA	False	NA	NA	NA	12232792	12234655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_12232839_12232901
103140	chr11	-	2777	15	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	10617	971	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	270.146256683301	1	116	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAACTGCTTGGCCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	97068090	97052364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053470_97054258_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071
103141	chr2	+	1925	9	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	90	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCACCGCACTAGGCT	NA	False	NA	NA	False	NA	NA	NA	154713807	154734713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154714819_154715461_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726366_154729622_154729728_154730102_154730280_154734610
103143	chr5	+	1159	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-55	-102	-55	102	mono-exon	FALSE	NA	NA	NA	NA	NA	13	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCCCATAATAACAGGAGG	NA	False	NA	NA	False	NA	NA	NA	96009517	96010676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010700
103144	chr18	+	1660	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	8	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	11	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	48179721	48181455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180630_48180703
103145	chr2	-	1835	11	Antisense	novelGene_ENSMUSG00000093242.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	69	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAGAGGCGGGGCCAGTC	NA	False	NA	NA	False	NA	NA	NA	75496390	75489612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_75489729_75491807_75491932_75492013_75492148_75492237_75492450_75492829_75492930_75493016_75493099_75493186_75493269_75493913_75494057_75495369_75495494_75495576_75495644_75495739
103146	chr11	+	2088	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	51	91	-40	-12	multi-exon	FALSE	canonical	3	862	junction_16	81.0315439264927	2	91	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTGCAAATATAAGACCAATT	NA	False	NA	NA	False	NA	NA	NA	115455310	115474720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
103147	chr3	+	212	2	ISM	ENSMUSG00000041355.14	ENSMUST00000192495.6	620	6	7206	11	7202	3	3prime_fragment	FALSE	canonical	3	5032	junction_1	0	1	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGGTTTTTTCTAGACT	NA	False	NA	NA	False	NA	NA	NA	88494179	88495329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_88494250_88495187
103149	chr17	-	1523	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	90	780	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4037.90436829551	1	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATATTTGTTTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	36149010	36145716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36146336_36146369_36146932_36147054_36147166_36147519_36147629_36148888
103150	chr15	+	2339	1	Intergenic	novelGene_3239	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	77	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAATTTAGGAGAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	22700893	22703232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22700900_22703200
103152	chr2	+	1895	6	NNC	ENSMUSG00000036617.18	novel	4786	18	NA	NA	-158	292	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	77.3164924191469	1	93	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAGAAACCAGGTAAGAC	4638	False	NA	NA	False	NA	NA	NA	20524443	20749089	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215_20714419_20718165_20718260_20748269
103153	chr2	+	1093	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11374	42	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGGACACTGAGAGCAAGA	NA	False	NA	NA	False	NA	NA	NA	11413660	11426073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
103154	chr6	-	1960	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	116	9	-116	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	127	82	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGTTAATATAAGACTT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
103155	chr11	+	177	1	Intergenic	novelGene_2518	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTCGGATGCCTGCATGAG	NA	False	NA	NA	False	NA	NA	NA	108902771	108902948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_108902800_108902900
103156	chr10	+	3211	10	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	67	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCAGGCTTCTGGAAGAG	NA	False	NA	NA	False	NA	NA	NA	62648776	62675630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652159_62652254_62654719_62654816_62655253_62655403_62658328_62658536_62668665_62668770_62669320_62669410_62673955
103157	chr17	+	4490	2	Genic_Genomic	ENSMUSG00000119584.1	novel	1849	1	NA	NA	-2328	425	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGATGTGAGTGTCGCGT	NA	False	NA	NA	False	NA	NA	NA	40154915	40159517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr17_+_40158044_40158155
103158	chr6	-	2710	16	Antisense	novelGene_ENSMUSG00000034269.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	110	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGGCCCCTTGGGTCTCTT	NA	False	NA	NA	False	NA	NA	NA	113105429	113082965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_113083102_113086384_113086572_113086840_113086952_113087277_113087486_113087826_113087885_113088318_113088496_113091802_113092051_113092492_113092637_113092965_113093089_113093745_113093858_113094335_113094577_113095216_113095305_113096375_113096630_113097799_113098121_113098526_113098770_113105370
103161	chr17	-	2853	4	ISM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	4537	-317	4484	317	3prime_fragment	FALSE	canonical	3	1697	junction_3	76.1051903617618	1	128	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAGCCTGTGTGTATTTTG	9310	False	NA	NA	False	NA	NA	NA	25175126	25161126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991
103162	chr11	-	1345	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	-5	3	-5	-3	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	6	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCCCCAACTCAGTTGT	9936	False	NA	NA	False	NA	NA	NA	69812217	69807548	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
103163	chr4	-	1266	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-192	-72	192	mono-exon	FALSE	NA	NA	NA	NA	NA	2	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAGAAGACAGAA	NA	False	NA	NA	False	NA	NA	NA	91740978	91739712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
103164	chrX	+	7568	8	Intergenic	novelGene_3893	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	295	241	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTTTTCTTTTTAAAGA	NA	False	NA	NA	False	NA	NA	NA	20995167	21276114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_20995747_21012249_21012388_21014986_21015577_21022722_21023520_21055800_21055988_21057993_21058096_21122369_21122553_21271122
103165	chr16	+	519	1	Intergenic	novelGene_3815	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	18	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211520	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
103166	chr12	+	1752	1	Antisense	novelGene_ENSMUSG00000066632.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	48	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTCTGGATGGAAGAT	NA	False	NA	NA	False	NA	NA	NA	10948557	10950309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_10948600_10950300
103167	chr4	+	2505	9	Fusion	ENSMUSG00000078498.6_ENSMUSG00000065999.14	novel	2800	4	NA	NA	39	0	multi-exon	FALSE	non_canonical	0	0	junction_1	41.6443273447897	1	45	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147390169	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147390233_147534296_147534577_147536170_147536264_147651472_147651652_147661528_147661587_147665698_147665826_147667290_147667436_147667927_147668422_147668589
103168	chr7	-	1434	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	75	2	-9	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	2	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	NA	False	NA	NA	NA	126398351	126394407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
103169	chr14	-	1845	8	NNC	ENSMUSG00000060373.16	novel	1301	8	NA	NA	-113	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1358.28724682887	2	109	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGAAGGAAAGACAATTTT	8612	False	NA	NA	False	NA	NA	NA	52341598	52311906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321872_52341345
103170	chr8	+	4103	4	NNC	ENSMUSG00000096401.3	novel	930	5	NA	NA	-216	-811	at_least_one_novel_splicesite	FALSE	canonical	3	200	junction_1	453.375733311296	1	161	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTAAACATAAATATAAATA	NA	False	NA	NA	False	NA	NA	NA	20711886	20726455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20712265_20717197_20717497_20721120_20721241_20723149
103171	chr4	+	4555	10	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-13	5	multi-exon	TRUE	non_canonical	0	0	junction_3	104.031809000664	4	121	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	NA	NA	NA	147056419	147145256	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056575_147058404_147058498_147067150_147067253_147071090_147071218_147073383_147073994_147074329_147074870_147075121_147075192_147142168_147142646_147142811_147144749_147144812
103172	chr5	+	387	1	Intergenic	novelGene_924	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5	4	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	146197788	146198175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_+_146197800_146198200
103173	chr11	-	2577	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	-13	-703	8	703	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	1	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	120534587	120529538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
103176	chr2	+	3341	24	Antisense	novelGene_ENSMUSG00000027379.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	125	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGATTCGAATTCCCCGCG	NA	False	NA	NA	False	NA	NA	NA	127643065	127673754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_127643359_127644942_127645045_127646101_127646271_127646393_127646552_127646728_127646907_127647211_127647314_127648143_127648289_127649727_127649900_127650866_127650975_127652528_127652703_127654866_127654945_127655744_127655845_127656557_127656667_127656756_127656888_127658008_127658068_127659171_127659397_127661130_127661282_127663591_127663776_127663860_127663914_127665877_127666016_127669218_127669418_127671358_127671497_127671597_127671658_127673639
103177	chr13	+	2639	4	NNC	ENSMUSG00000113626.2	novel	419	3	NA	NA	-20966	459	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	83.7549335196971	1	116	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAATGTGGTAAAAGCT	NA	False	NA	NA	False	NA	NA	NA	61987663	62009948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61987915_62005782_62005910_62007517_62008922_62009091
103178	chr3	+	5468	11	NNC	ENSMUSG00000025764.15	novel	5481	11	NA	NA	3	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	321.511803826858	1	290	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATACATTTTAAGTGTC	NA	False	NA	NA	False	NA	NA	NA	41510168	41571284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554667_41555844_41555919_41558904_41559427_41564231_41564356_41567557
103179	chr5	+	943	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	53	274	-12	1	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	53	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTCCTTTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	121342596	121347030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
103180	chr4	+	2296	5	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	43.7342828911141	3	60	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447340_147665698_147665826_147667290_147667431_147667838
103181	chr4	+	3057	10	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	3	182332	multi-exon	FALSE	non_canonical	0	0	junction_1	58.6931758289572	1	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTTGCTTTGGTTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	147216497	147600523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147219028_147219122_147233147_147233279_147316807_147316901_147337800_147337859_147413438_147413566_147415724_147415863_147416444_147418073_147600191
103183	chr12	+	615	1	Intergenic	novelGene_4446	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	17	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTTTAAGTTCTTACCA	2114	False	NA	NA	False	NA	NA	NA	99611319	99611934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_99611300_99611900
103184	chr13	+	4535	8	Antisense	novelGene_ENSMUSG00000052180.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACTCACTCCCAGGCCTC	8582	False	NA	NA	False	NA	NA	NA	34046256	34089189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_34046722_34049867_34053094_34064604_34064763_34077788_34077930_34079251_34079370_34081326_34081479_34083243_34083423_34089093
103185	chr7	+	3036	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	56	-1	47	1	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	18	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2676	False	NA	-61	True	NA	NA	NA	13012807	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
103187	chr4	-	2192	6	NNC	ENSMUSG00000066000.13	novel	2558	5	NA	NA	2	-32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	209.867196102678	2	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTATTGTAAATAAAGCT	NA	False	NA	NA	False	NA	NA	NA	147726968	147696427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147697761_147698097_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
103188	chr9	+	1283	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	53	-9	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	8682.0809858523	3	57	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTCTCTAGGCTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	64080727	64085939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080912_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083431_64085018_64085087_64085178_64085300_64085504
103189	chr12	+	615	1	Intergenic	novelGene_4447	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	15	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTTTAAGTTCTTACCA	2114	False	NA	NA	False	NA	NA	NA	99611319	99611934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_99611300_99611900
103191	chr11	-	3417	2	Intergenic	novelGene_2291	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	114	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGACCCGTTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	57449053	57433745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433766_57445656
103192	chr12	+	1631	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-590	251	-10	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	69	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAATAACTCCATGTTC	NA	False	NA	NA	False	NA	NA	NA	72132881	72148225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
103193	chr2	-	1469	8	Antisense	novelGene_ENSMUSG00000099091.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.349927106111883	1	61	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCAGCCGGCCCTTCAG	9710	False	NA	NA	False	NA	NA	NA	162922734	162906276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162906418_162910073_162910234_162914541_162914834_162916300_162916726_162917556_162917696_162919706_162919807_162921511_162921623_162922633
103194	chr14	+	1864	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	7	-57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	773.170258429998	2	63	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGGCGAAGGTGTACTGA	NA	False	NA	NA	False	NA	NA	NA	30271144	30295524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280819_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290185_30290242_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
103195	chr17	-	2568	16	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	8.73053390247252	1	52	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCCTGGCCTCCCGGAAA	NA	False	NA	NA	False	NA	NA	NA	56629228	56611347	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56611391_56612082_56612241_56616334_56616576_56617677_56617837_56619053_56619421_56619803_56619968_56620040_56620256_56622195_56622314_56622396_56622512_56622774_56622881_56624002_56624113_56624991_56625149_56625244_56625382_56627158_56627281_56627394_56627542_56629019
103197	chr8	+	3220	20	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-3	-2092	combination_of_known_splicesites	FALSE	canonical	1	61	junction_7	898.176308661302	1	56	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGATGTCATGCGCTCTGC	NA	False	NA	NA	False	NA	NA	NA	111760507	111782204	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
103198	chr17	+	2530	10	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	1485	386	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	712.559098696945	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTTTTTGTTTTTGTT	7648	False	NA	NA	False	NA	NA	NA	56621147	56629725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625387_56627161_56627283_56627396_56627543_56629020_56629126_56629355
103200	chr1	-	3051	5	NIC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-4266	-2	intron_retention	FALSE	canonical	3	2274	junction_4	228.928482282131	2	61	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTATTTGTCTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	20880430	20873198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_20873879_20875040_20875564_20876020_20877107_20878944_20879096_20879819
103201	chr11	+	3997	24	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	5	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	574.998663596705	1	81	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332187	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333548_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
103202	chr3	+	2188	19	ISM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	3460	2	-3452	-2	3prime_fragment	FALSE	canonical	1	416	junction_12	308.589623214319	3	73	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGTCGGTAAGTTGGA	NA	False	NA	NA	False	NA	NA	NA	151919615	151938406	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
103203	chr5	+	1475	13	ISM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	64047	2277	1848	1589	3prime_fragment	FALSE	canonical	3	795	junction_1	145.256573765948	1	31	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAGAACCCCGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	75799622	75815105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
103204	chr4	+	2887	5	Intergenic	novelGene_2069	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_3	32.7747997705554	1	58	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146365110	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146384326_146384431_146390758_146391413_146391497_146392220_146392302
103207	chr11	+	3707	23	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	1255	210	-1162	-210	3prime_fragment	FALSE	canonical	3	2354	junction_9	211.48498960079	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTCTGACTCAACCTTC	NA	False	NA	NA	False	NA	NA	NA	72333435	72342384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
103208	chr7	-	1903	7	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	7615	3	-17	-3	3prime_fragment	FALSE	canonical	3	5282	junction_4	586.335512597807	3	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGTTGTACATGACT	NA	False	NA	-24	True	NA	NA	NA	110674609	110671141	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543
103209	chr12	-	2456	8	NNC	ENSMUSG00000021270.14	novel	3281	11	NA	NA	-1	-552	intron_retention	FALSE	non_canonical	0	0	junction_2	4713.99420743758	2	97	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAGATGACGACACATCAC	NA	False	NA	NA	False	NA	NA	NA	110662107	110658013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_110658084_110658547_110659602_110659747_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952
103210	chr16	-	500	1	Intergenic	novelGene_3822	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	10	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATGCGAGTGCCTAGT	NA	False	NA	NA	False	NA	NA	NA	57212039	57211539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
103211	chr4	+	3609	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-30	182161	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	161.027821148004	2	68	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGTTTTCAGTTTGC	NA	False	NA	NA	False	NA	NA	NA	146586453	146806013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586602_146597241_146597335_146797298_146797381_146800390_146800518_146802050_146802672_146803343_146803953_146804037_146804243_146804289
103212	chr15	-	2611	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-49	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	2	108	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCATGAGTCTCAGTGGT	709	False	NA	NA	False	NA	NA	NA	36793812	36771015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772091_36772264_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
103213	chr18	+	1613	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	45	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	83	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	48179758	48181458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48179899_48179985
103215	chr17	+	3359	16	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	43	0	intron_retention	FALSE	non_canonical	0	0	junction_12	805.994447182416	1	66	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	542	False	NA	NA	False	NA	NA	NA	56610442	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625387_56627400_56627464_56627517_56627543_56629020_56629126_56629355
103216	chr4	-	2757	4	Antisense	novelGene_ENSMUSG00000078498.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCACGAGGCAGCCAAGG	NA	False	NA	NA	False	NA	NA	NA	147418182	147395030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147395145_147400356_147400437_147409229_147409332_147415721
103217	chr10	+	1742	5	FSM	ENSMUSG00000025393.13_ENSMUSG00000104755.3	ENSMUST00000126040.8	1131	5	-498	-113	-38	0	multi-exon	FALSE	canonical	3	10302	junction_3	531.371103843632	1	3	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	NA	False	NA	NA	NA	127921116	127926142	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
103218	chr11	-	2386	13	Antisense	novelGene_ENSMUSG00000020850.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	36	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGTAAAGACGAGAGGGTT	NA	False	NA	NA	False	NA	NA	NA	75400272	75392593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75392758_75393323_75393514_75394094_75394333_75394440_75394570_75395301_75395412_75395486_75395667_75395919_75396113_75397153_75397394_75397487_75397632_75399099_75399239_75399344_75399484_75399587_75399795_75399959
103220	chr4	-	2749	5	Antisense	novelGene_ENSMUSG00000065999.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	105	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAATCGCGGAACTTCC	NA	False	NA	NA	False	NA	NA	NA	147669639	147637735	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147637864_147646884_147646966_147661521_147661585_147665696_147665826_147667291
103221	chr11	+	1614	10	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1390.49211468014	168	37	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267219_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279975_52280178
103222	chr15	-	1843	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	199	80	-119	-80	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	1	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCATGAACAATCCAAGCAT	639	False	NA	NA	False	NA	NA	NA	36793882	36772027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
103223	chr8	+	4170	4	NNC	ENSMUSG00000071796.14	novel	4659	5	NA	NA	-209	-382	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	358.679367804853	2	118	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTTTAAGCAGGGGGTAA	8799	False	NA	NA	False	NA	NA	NA	20157804	20172612	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_20158009_20163109_20163409_20167042_20167158_20169060
103224	chr6	+	1348	4	NNC	ENSMUSG00000067338.7	novel	1775	5	NA	NA	2476	-75	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	587.329738922032	1	80	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGCCGTCCATTTACACCT	NA	False	NA	NA	False	NA	NA	NA	145563958	145567130	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_145564182_145564457_145564607_145564908_145565571_145566816
103225	chr1	-	1922	15	NNC	ENSMUSG00000026356.16	novel	2175	16	NA	NA	3	-233	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	521.133204014608	1	109	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGAGGTGGCCACCATACT	NA	False	NA	NA	False	NA	NA	NA	128345093	128291676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306649_128316846_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
103226	chr4	+	3040	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-13	-1901	multi-exon	FALSE	non_canonical	0	0	junction_2	41.9267217893314	3	69	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206928	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146207051_146207223_146207708_146207846_146254188_146254327_146289403_146289519_146291416_146291510_146312913_146312972_146388486_146388614_146390758_146390897_146391646_146393411_146552593
103227	chr12	-	1736	2	FSM	ENSMUSG00000001270.10	ENSMUST00000222705.2	2839	2	1101	2	304	-2	multi-exon	FALSE	canonical	3	8476	junction_1	0	115	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111637615	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258
103228	chr3	+	1758	13	Genic_Genomic	ENSMUSG00000045576.17	novel	691	8	NA	NA	-69166	-1727	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	8	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTACCACTGTGCTATA	NA	False	NA	NA	False	NA	NA	NA	104702154	104794961	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_104702556_104702639_104702765_104703011_104703099_104703175_104703300_104704077_104704156_104704283_104704477_104704589_104704713_104706713_104706924_104707012_104707110_104707259_104707366_104707590_104707748_104708000_104708011_104794914
103229	chr11	+	1597	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-25	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1151.33076507676	23	41	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5381	False	NA	NA	False	NA	NA	NA	52251936	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276458_52279268
103230	chrM	+	805	2	Genic_Genomic	ENSMUSG00000064370.1	novel	1144	1	NA	NA	0	-16	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAAATTATATCCATGTCT	-2	True	NA	87	True	NA	NA	NA	14144	15272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_14597_14919
103231	chr9	-	653	3	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	2431	8	208	-8	3prime_fragment	FALSE	canonical	3	15409	junction_1	167.5	45	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCTGTGTTGGTCAATG	9531	False	NA	NA	False	NA	NA	NA	78386575	78385738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559
103232	chr3	+	1614	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	11	-13	-1	13	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	7105	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTCTGTGTTATTTCTT	8501	False	NA	NA	False	NA	NA	NA	94350642	94356028	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
103233	chr17	-	2569	2	Intergenic	novelGene_244	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	71	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAAAGCGCCTATGAGAA	NA	False	NA	NA	False	NA	NA	NA	40493792	40490583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_-_40490611_40491250
103234	chr2	-	3929	6	NNC	ENSMUSG00000078903.11	novel	1956	6	NA	NA	18	-1454	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	33.4879082655218	1	135	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTAGTGATGTGTTTGCG	NA	False	NA	NA	False	NA	NA	NA	175048651	175034311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_175036765_175037017_175038181_175039337_175039399_175039607_175039727_175044851_175044907_175048573
103235	chr5	+	3512	25	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	147	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGCAGCCCCGCCTGCGG	NA	False	NA	NA	False	NA	NA	NA	100511686	100564081	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100511804_100513586_100513854_100516152_100516210_100521236_100521552_100523049_100523196_100526692_100526863_100529020_100529192_100530619_100530769_100531656_100531783_100532982_100533164_100533987_100534063_100536389_100536470_100536925_100536966_100538617_100538687_100540247_100540490_100540728_100540875_100541061_100541218_100543650_100543757_100547204_100547351_100550077_100550215_100551873_100551968_100553300_100553498_100555011_100555140_100555895_100555973_100563961
103236	chr7	-	1355	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	140	16	-5	-14	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	1	22	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATTTAAGGGGGAGTCT	NA	False	NA	NA	False	NA	NA	NA	126398286	126394421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
103237	chr17	+	1748	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	3	98	3	-98	mono-exon	FALSE	NA	NA	NA	NA	NA	272	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGGTGGAGCGCTGAGAA	NA	False	NA	-22	True	NA	NA	NA	40157246	40158994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40157200_40159000
103238	chr4	+	2392	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-6868	-131	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	38.111678000319	2	63	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGGAAGTGAGGAGATAT	NA	False	NA	NA	False	NA	NA	NA	147228082	147264905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147228142_147249797_147249834_147260315_147260362_147261203_147261331_147262781
103239	chr19	+	1405	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	159	300	159	-300	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	1	73	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTTTTCCTGTCCTGCC	1002	False	NA	NA	False	NA	NA	NA	8944563	8955543	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
103240	chr5	-	3875	15	NIC	ENSMUSG00000106864.4	novel	4718	18	NA	NA	0	-957	intron_retention	FALSE	canonical	3	356	junction_14	88.313709153731	4	74	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACCTACACTGAAACCA	NA	False	NA	NA	False	NA	NA	NA	31337253	31315744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31315840_31316404_31316534_31316777_31317206_31317291_31317437_31323229_31323360_31323704_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
103241	chr2	-	2048	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	25	-48	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5614.39484578481	1	44	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGCTATAACTGCGTGA	3810	False	NA	NA	False	NA	NA	NA	154734677	154713385	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714089_154714157_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154734622
103242	chr13	-	3260	4	NNC	ENSMUSG00000114816.2	novel	3416	3	NA	NA	-7261	-265	at_least_one_novel_splicesite	FALSE	canonical	3	50	junction_2	29.9332590941915	1	145	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACCTTATGAATGTAATT	1333	False	NA	NA	False	NA	NA	NA	67010196	66997979	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_67000944_67002549_67002611_67002809_67002937_67010088
103244	chrM	+	880	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	72	593	72	-593	mono-exon	FALSE	NA	NA	NA	NA	NA	1	56	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAGTATTTAGCTGACTT	27	False	NA	NA	False	NA	NA	NA	5399	6279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_6300
103245	chr14	+	3470	15	NNC	ENSMUSG00000021767.20	novel	4671	4	NA	NA	41722	-1368	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	75.0506291697512	1	149	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCCTGCCCTAGAGAATAG	NA	False	NA	NA	False	NA	NA	NA	21608664	21719573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_21608897_21659821_21659931_21668958_21669075_21669285_21669368_21672022_21672156_21676786_21676909_21678880_21678997_21681389_21681532_21684543_21684706_21687620_21687709_21710810_21711043_21711495_21711656_21712225_21712535_21714524_21714817_21718398
103247	chr2	+	3480	16	Antisense	novelGene_ENSMUSG00000026669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGCCAAAAAACTAAATTGGG	3230	False	NA	NA	False	NA	NA	NA	4997701	5017552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_4998667_4999379_4999496_5000533_5000673_5001910_5002144_5003344_5003453_5003539_5003645_5004484_5004594_5005672_5005868_5006074_5006194_5008820_5008985_5009751_5009922_5011153_5011395_5011883_5012244_5013290_5013616_5015492_5015587_5017515
103248	chrM	+	629	2	Genic_Genomic	ENSMUSG00000064363.1	novel	1378	1	NA	NA	-290	-3	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	32	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGTGAATATAGTTTACAA	-1	True	NA	NA	False	NA	NA	NA	9876	11541	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chrM_+_10296_11331
103249	chr5	-	1742	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	-4	-44	intron_retention	FALSE	non_canonical	0	0	junction_2	1944.68452168697	1	69	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTTGAGACCAATAAAAG	8937	False	NA	NA	False	NA	NA	NA	142892461	142888913	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890105_142890538_142890991_142891113_142891191_142891232_142891318_142891448_142892406
103250	chr15	-	1457	9	ISM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	8281	21	-930	-21	3prime_fragment	FALSE	canonical	3	5404	junction_8	399.766318459922	3	51	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAATTCCTTAAACAG	-7	True	NA	NA	False	NA	NA	NA	36600936	36595925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836
103251	chr4	-	2372	11	ISM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	37650	9	7741	-9	3prime_fragment	FALSE	canonical	3	1473	junction_1	76.9457601171111	1	93	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137486045	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882
103252	chr11	+	1783	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1151.33076507676	230	70	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276530_52279206
103253	chr15	+	3417	17	Antisense	novelGene_ENSMUSG00000022464.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGTGGAAATTTCCATC	NA	False	NA	NA	False	NA	NA	NA	96892712	96953830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_96893815_96894313_96894969_96896319_96896421_96897368_96897515_96903700_96903825_96906292_96906395_96906538_96906621_96906744_96907011_96907820_96907887_96907994_96908069_96908157_96908247_96910780_96910872_96911313_96911393_96914008_96914125_96914641_96914733_96917604_96917742_96953734
103254	chr4	-	3106	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	6	63800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	57.0197334262446	2	171	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994041	146912352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913790_146914042_146914284_146976169_146977109_146978205_146978333_146982168_146982273_146991979_146992072_146993875
103255	chr4	+	1703	12	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	5661.93712872077	4	72	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGCTGGGCATCTCA	NA	False	NA	NA	False	NA	NA	NA	150321697	150333330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331213_150331907_150332114_150332308_150332397_150332517_150332577_150332942
103256	chr3	+	1357	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	137	-6	115	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAATGTTCAACA	5577	False	NA	NA	False	NA	NA	NA	54388995	54390352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54389000_54390400
103258	chr4	+	2737	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	59	2	59	-2	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	4	46	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAATTTGCTTTGGTTGTT	NA	False	NA	NA	False	NA	NA	NA	146033973	146063189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
103259	chr6	-	2802	9	Fusion	ENSMUSG00000068262.5_ENSMUSG00000030055.17_ENSMUSG00000030057.16	novel	952	6	NA	NA	52	57	multi-exon	FALSE	non_canonical	0	0	junction_1	4959.510276983	15	42	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87827952	87741920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr6_-_87742157_87742262_87743135_87771767_87771780_87818703_87818877_87820126_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
103260	chr12	+	1988	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	59	-61	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3080.42934669828	1	94	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTCTTGAACTTTCATG	NA	False	NA	NA	False	NA	NA	NA	24758298	24764084	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758638_24758937_24759085_24759323_24759441_24760377_24760475_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763490_24763541
103261	chr13	-	6481	42	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	-14	30180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	598.652969383213	9	90	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACCCTGCTGGGTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	6698827	6599623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6599723_6602674_6602776_6603215_6603367_6605386_6605504_6605586_6605685_6606577_6606737_6607795_6607925_6608191_6608281_6609390_6609519_6610064_6610180_6610637_6610732_6611983_6612122_6613409_6613540_6623053_6623203_6624399_6624468_6625052_6625163_6627422_6627551_6628474_6628621_6629451_6629557_6629685_6630152_6630201_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
103262	chr3	-	3787	25	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	399	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	401.556396948866	2	190	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACCTCTACCTTCAGC	8122	False	NA	NA	False	NA	NA	NA	89955207	89907605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909585_89909781_89910551_89910620_89915562_89915669_89916416_89916635_89919984_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928912_89932369_89932542_89933899_89933986_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946156_89946324_89951006_89951118_89952160_89952239_89955076
103263	chr1	-	7966	45	FSM	ENSMUSG00000026193.16	ENSMUST00000187938.7	7965	45	0	-1	0	1	multi-exon	FALSE	canonical	3	235	junction_7	505.24113791141	1	120	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTGGACGTCATTTCTT	NA	False	NA	NA	False	NA	NA	NA	71692331	71624680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_71625443_71625988_71626103_71629256_71629364_71629925_71630052_71632229_71632395_71634822_71634962_71636439_71636832_71637532_71637623_71638373_71638554_71638761_71638852_71639448_71639626_71640359_71640448_71641468_71641657_71642818_71643089_71644128_71644243_71645043_71645200_71645861_71646027_71647062_71647180_71648571_71648842_71650087_71650178_71651626_71651810_71654518_71654711_71657737_71657825_71658542_71658712_71659883_71659979_71663236_71663504_71665132_71665406_71666321_71666517_71667215_71667306_71667566_71667696_71668474_71668652_71668824_71669003_71671199_71671322_71676410_71676555_71677615_71677745_71679450_71679604_71680310_71680488_71681110_71681291_71682118_71682311_71684705_71684862_71687167_71687306_71688352_71688485_71689720_71689859_71690679_71690809_71691990
103264	chr11	+	2130	11	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-26681	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1332.52715169335	1076	86	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	328	False	NA	NA	False	NA	NA	NA	52225005	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52225187_52249647_52249814_52251925_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103266	chr2	-	2389	4	Fusion	ENSMUSG00000083111.2_ENSMUSG00000081590.2	novel	1958	3	NA	NA	-68	1311	multi-exon	FALSE	non_canonical	0	0	junction_1	7.07106781186548	1	55	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTCCCTTTGAAGGA	NA	False	NA	NA	False	NA	NA	NA	176864731	176743997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_176745553_176746388_176747091_176748242_176748304_176864660
103267	chr1	-	3189	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-18	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	645.204909311763	1	125	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGACTTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20890502	20873237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887060_20887284_20887676_20888016_20888130_20890354
103268	chr11	+	6107	19	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-5	-221	intron_retention	FALSE	canonical	3	2354	junction_5	204.553028229906	1	155	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72332197	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332600_72333225_72333310_72333395_72333471_72333571_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
103269	chr11	-	1210	2	NNC	ENSMUSG00000025132.14	novel	2150	6	NA	NA	986	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	14	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	NA	False	NA	NA	NA	120471220	120468934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120470050_120471125
103270	chr9	-	5304	19	NNC	ENSMUSG00000032580.13	novel	6321	23	NA	NA	649	-9	intron_retention	FALSE	non_canonical	0	0	junction_4	141.368924589197	1	93	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAAAACTGGGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	107637113	107617707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621422_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107
103271	chr17	-	1957	1	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	830	-44	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	40	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATCAAGACAGAGTTTCT	NA	False	NA	NA	False	NA	NA	NA	80513456	80511499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_-_80511500_80513500
103272	chr15	-	1548	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	191	4	64	-4	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	57	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	222	False	NA	NA	False	NA	NA	NA	98832255	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
103273	chr16	+	3633	8	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-6	intron_retention	FALSE	non_canonical	0	0	junction_1	708.484470470567	1	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTATATAGGTGGTCTG	6053	False	NA	NA	False	NA	NA	NA	22926507	22932690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927343_22927384_22927468_22927602_22927869_22928010_22928734_22929094_22929329_22930014_22930252_22930343_22930566
103275	chr6	-	2740	11	NNC	ENSMUSG00000004980.17	novel	1703	13	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3210.61346318737	2	125	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	NA	False	NA	NA	NA	51446828	51438100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51438414_51438899_51440235_51440390_51440476_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444169_51444272_51446650
103276	chr11	-	1116	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-41	-73	41	mono-exon	FALSE	NA	NA	NA	NA	NA	3	65	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCCTATCCCAACTCG	4388	False	NA	NA	False	NA	NA	NA	20286086	20284970	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20285000_20286100
103277	chrX	+	3380	12	Antisense	novelGene_ENSMUSG00000031297.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	105	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACGCACACCGTCAGTCAC	NA	False	NA	NA	False	NA	NA	NA	100122745	100129613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_100123202_100123307_100123413_100123704_100123874_100124313_100124480_100125303_100125405_100125498_100125642_100125800_100126022_100126140_100126258_100126401_100126577_100126756_100127884_100128882_100129065_100129195
103278	chr5	+	1309	5	Antisense	novelGene_ENSMUSG00000066551.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8	4	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTACTCTCCAGCCAGCGCG	NA	False	NA	NA	False	NA	NA	NA	148985037	148989847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148985723_148986535_148986712_148987104_148987251_148987397_148987562_148989709
103279	chr5	+	3867	15	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	94	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCGAAGATGGCGCCGC	NA	False	NA	NA	False	NA	NA	NA	31315744	31337253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315840_31316404_31316534_31316777_31317206_31317291_31317436_31323228_31323358_31323702_31325148_31325331_31325444_31325603_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331111_31331436_31331577_31331841_31337230
103280	chr3	+	2030	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	19	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1527.9666894542	1	114	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986990	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993889_89994796_89994890_89995008_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
103281	chr8	-	1918	1	Intergenic	novelGene_1591	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	41	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGCCTCTGTGGGTCCC	NA	False	NA	NA	False	NA	NA	NA	20726473	20724555	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_20724600_20726500
103282	chr4	+	2126	7	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	12	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	45.0940375462458	2	41	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206912	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207850_146291416_146291453_146388486_146388614_146390758_146390897_146392318_146393429_146552609
103283	chr19	-	3324	24	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCGACGATAGAGAGACG	NA	False	NA	NA	False	NA	NA	NA	10606898	10583037	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10583130_10584208_10584357_10585156_10585271_10585611_10585835_10588060_10588177_10589003_10589113_10590244_10590394_10591469_10591554_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599531_10599650_10599860_10600700_10600796_10600887_10601017_10602112_10602210_10602528_10602697_10603261_10603362_10603965_10604125_10604487_10604507_10606442
103284	chr10	-	3201	18	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	371	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	183.491625069343	1	92	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62175950	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105441_62107411_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120065_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128239_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
103285	chr11	+	1727	8	FSM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	34	-870	34	-4	multi-exon	FALSE	canonical	3	3141	junction_5	166.267181097786	2	34	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3573	False	NA	NA	False	NA	NA	NA	52265123	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103286	chr4	+	2545	10	NNC	ENSMUSG00000028645.12	novel	3260	10	NA	NA	42	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	294.361497750682	2	125	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAACTTGGTTTCAAATG	618	False	NA	NA	False	NA	NA	NA	118965949	118994521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_118966170_118977587_118977684_118989319_118989481_118989650_118989881_118990293_118990454_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
103287	chr9	+	1135	1	Intergenic	novelGene_1017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGAATAAAAATCCTCTT	NA	False	NA	NA	False	NA	NA	NA	38552544	38553679	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr9_+_38552500_38553700
103288	chr15	+	4105	2	Intergenic	novelGene_3244	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	1235	junction_1	0	2	96	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22700896	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22704559_22704652
103289	chr10	+	2855	13	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2516.51544247641	48	28	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATCCACATGTGCTCGCA	2196	False	NA	NA	False	NA	NA	NA	81012479	81018322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014064_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017793
103290	chr13	-	1966	16	NNC	ENSMUSG00000021196.15	novel	2679	22	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	381.848742596099	11	50	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTACAACTCCCATGGTAC	NA	False	NA	NA	False	NA	NA	NA	6698761	6631221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631607_6648764_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675244_6685956_6686035_6698606
103291	chr4	-	3017	3	Antisense	novelGene_ENSMUSG00000087166.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	186	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGTCACACACGCTGAC	NA	False	NA	NA	False	NA	NA	NA	98626701	98615055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_98615116_98621377_98622315_98624681
103292	chr15	-	1651	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	118	84	54	-84	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	52324	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	NA	False	NA	NA	False	NA	NA	NA	31601832	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
103293	chr13	+	2204	5	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	-8	511	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	113.706859951368	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGTAAGCTTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	62277738	62321744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62317255_62317383_62317567_62317629_62318963_62320539_62321407
103294	chrX	+	1287	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	-25	-52	-25	52	mono-exon	FALSE	NA	NA	NA	NA	NA	12	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CTACTAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13068784	13070071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_13068800_13070100
103295	chr16	+	3139	10	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_9	636.048216201675	1	68	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930591
103296	chr4	-	2837	5	FSM	ENSMUSG00000066000.13	ENSMUST00000037565.14	2558	5	-23	-256	-18	254	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	63	11	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGAGTGTTTAGCATTA	NA	False	NA	NA	False	NA	NA	NA	147726988	147696139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
103297	chr2	+	1306	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-86	1202	-8	434	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	1	64	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATTTCTCTTTTCAATG	NA	False	NA	NA	False	NA	NA	NA	174852025	174859839	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_174852115_174858430_174858558_174858749
103298	chr17	+	3895	11	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-1	2840	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	53.5522175077746	1	101	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAACTCCAGCCTTTCACT	9389	False	NA	NA	False	NA	NA	NA	36152566	36164351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152658_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36163488_36163581
103299	chr3	+	1990	9	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	7	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	1474.9927118464	2	65	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986978	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994761_89994846_89994997_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834_90006964_90007015
103300	chr11	-	5403	4	Intergenic	novelGene_2284	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	20805	138	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCATCTGTCAGACATCC	NA	False	NA	NA	False	NA	NA	NA	57450923	57429614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57429796_57433763_57434170_57446060_57450450_57450496
103301	chr5	+	3640	15	NIC	ENSMUSG00000029267.18	novel	2355	17	NA	NA	392	31	intron_retention	FALSE	canonical	0	0	junction_3	661.777989315795	1	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTCTGTGACTAGACTTC	NA	False	NA	NA	False	NA	NA	NA	108221172	108255367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108247519_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
103302	chr9	+	2626	9	NIC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	29	141	intron_retention	FALSE	canonical	3	16882	junction_2	1403.52242144541	1	32	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCTACTACAGAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	64080703	64085693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
103303	chr5	+	2517	15	NIC	ENSMUSG00000029267.18	novel	3068	16	NA	NA	3418	26	intron_retention	FALSE	canonical	0	0	junction_3	600.427874646956	1	63	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATTGCTCTGTGACTAG	NA	False	NA	NA	False	NA	NA	NA	108217040	108255362	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_+_108217230_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
103304	chr5	-	1576	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	203	-8	intron_retention	TRUE	non_canonical	0	0	junction_1	1654.6796668842	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	3864	False	NA	NA	False	NA	NA	NA	142891373	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889256_142889414_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
103305	chr12	+	2195	10	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	44	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	262.893209319246	1	71	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTGTGAAGTACAATTAT	2941	False	NA	NA	False	NA	NA	NA	109612639	109628147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620811_109622274_109622369_109624486_109624556_109626156_109626242_109627179
103306	chr15	+	2381	2	Antisense	novelGene_ENSMUSG00000060429.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	62	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	NA	False	NA	NA	False	NA	NA	NA	55737698	55740286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_55738428_55738634
103307	chr10	-	2133	13	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	-8628	-44	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	127.286967998386	2	85	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGGCGACGATAAAGACAA	31	False	NA	NA	False	NA	NA	NA	62616383	62588997	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612534_62612627_62612743_62616219
103308	chr4	+	2301	7	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-242719	-28	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	37.6404776212465	2	34	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACTCCAATAAAGCTGAAAGA	NA	False	NA	NA	False	NA	NA	NA	147395014	147669627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395127_147533935_147533956_147578832_147578926_147637751_147637856_147665698_147665826_147667290_147667436_147667927
103309	chr10	-	2064	1	NIC	ENSMUSG00000047146.18	novel	13986	11	NA	NA	25073	929	mono-exon	FALSE	NA	NA	NA	NA	NA	11	37	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTTGTGTGGGTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	62676010	62673946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_-_62673900_62676000
103311	chr16	+	2355	9	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_6	752.302206147902	1	34	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929438_22930293_22930343_22930566_22930647_22931100
103312	chrX	+	1699	13	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-5177	331	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	982.19435095889	1	50	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCTCCCTCCTCAGATC	NA	False	NA	NA	False	NA	NA	NA	20539138	20548775	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20539211_20541824_20541991_20542117_20542315_20544437_20544507_20544829_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
103313	chr12	-	1923	10	Antisense	novelGene_ENSMUSG00000020649.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	84	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCCGACTGCCAGCGCCC	3686	False	NA	NA	False	NA	NA	NA	24763918	24758284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_-_24758443_24758556_24758631_24758934_24759083_24759321_24759437_24760349_24760488_24761443_24761540_24761666_24761800_24762657_24762763_24762857_24762972_24763076
103314	chr17	+	1290	1	Intergenic	novelGene_230	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	63	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCACGTACGCGTCCGGGC	NA	False	NA	NA	False	NA	NA	NA	40154579	40155869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154600_40155900
103315	chr5	-	3304	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	6	228	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	202.612329765095	1	104	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGCACTTGTGAGTGGG	NA	False	NA	NA	False	NA	NA	NA	31337455	31314559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316532_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331113_31331434_31331575_31331840_31337227
103316	chr17	+	1463	1	FSM	ENSMUSG00000119584.1	ENSMUST00000240377.1	1849	1	980	-594	980	594	mono-exon	FALSE	NA	NA	NA	NA	NA	3	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTAGGGAAGTCGGTCG	NA	False	NA	-15	True	NA	NA	NA	40158223	40159686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_40158200_40159700
103317	chr5	-	5188	1	Intergenic	novelGene_738	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	176	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTTCCTTCATAACTGGT	NA	False	NA	NA	False	NA	NA	NA	88315669	88310481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_88310500_88315700
103318	chr15	+	2519	18	NNC	ENSMUSG00000022191.17	novel	4570	35	NA	NA	-61	-2003	intron_retention	FALSE	non_canonical	0	0	junction_2	207.640743113417	1	115	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAACAAACTGACAAGCAG	1256	False	NA	NA	False	NA	NA	NA	12826151	12883313	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_12826254_12827312_12827383_12833920_12834475_12834529_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251
103319	chr4	+	3400	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	12	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	181.304682110259	1	90	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146093405	146135328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535_146132073_146132156_146132805_146132973_146133276_146133863
103320	chrX	-	1175	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	-103	-73	103	mono-exon	FALSE	NA	NA	NA	NA	NA	3	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGACCCCCATAATAACAG	NA	False	NA	NA	False	NA	NA	NA	79238531	79237356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237400_79238500
103321	chrX	+	3543	22	NNC	ENSMUSG00000041133.12	novel	617	3	NA	NA	598	-44	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	338.915202874154	1	107	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGACAGTTGCAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	150800021	150842732	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150800288_150805741_150805931_150806034_150806148_150809237_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816979_150817156_150819101_150819245_150819336_150819475_150820365_150820487_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623
103322	chr19	-	1997	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	138	482	9	-30	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1	68	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAACATTAAAGTCCTA	NA	False	NA	NA	False	NA	NA	NA	15902285	15882523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
103323	chr14	-	2444	8	FSM	ENSMUSG00000037824.7	ENSMUST00000224209.2	2477	8	33	0	28	0	multi-exon	FALSE	canonical	3	610	junction_1	25.0591137846786	3	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATTTTGGTGATAAATTGA	NA	False	NA	NA	False	NA	NA	NA	40656245	40628403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144
103324	chr5	+	2127	1	Antisense	novelGene_ENSMUSG00000008348.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	13	39	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTGTCACAAAATATACAA	8814	False	NA	NA	False	NA	NA	NA	125463199	125465326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_125463200_125465300
103325	chr8	-	1085	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	260	580	6	-580	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGATAAAACCAGACCGTAAG	NA	False	NA	NA	False	NA	NA	NA	46664061	46660413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
103326	chr4	+	1184	1	Intergenic	novelGene_1918	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	4	24	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACCAGGATAGCCAAGCTT	8216	False	NA	NA	False	NA	NA	NA	108439594	108440778	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_108439600_108440800
103327	chr10	-	2305	13	NNC	ENSMUSG00000037012.19	novel	3851	22	NA	NA	13560	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	201.694677806717	2	70	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	3308	False	NA	NA	False	NA	NA	NA	62140612	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105422_62116807_62116908_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135041_62140498
103328	chr2	+	1738	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	298	366	at_least_one_novel_splicesite	FALSE	canonical	1	114	junction_1	5777.0385994549	1	78	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACCTGATGCTTTTCTGTC	NA	False	NA	NA	False	NA	NA	NA	29952162	29961807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958286_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
103329	chr1	+	2742	17	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGACACCGCCTTGGCGC	NA	False	NA	NA	False	NA	NA	NA	20873403	20890474	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873888_20875053_20875132_20875489_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880451_20882190_20882397_20882786_20882925_20883191_20883339_20884624_20884729_20884903_20885156_20886875_20887003_20887465_20887680_20888023_20888129_20890353
103331	chrX	-	4604	2	Intergenic	novelGene_3945	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	127	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGTAGCTGAGTTAGGGGG	NA	False	NA	NA	False	NA	NA	NA	63981701	63977042	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_63977746_63977800
103332	chrUn_JH584304v1	-	4067	6	Intergenic	novelGene_4644	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	517	junction_4	134.863783129497	1	137	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACCATAGCTTTGAATTTT	NA	False	NA	NA	False	NA	NA	NA	60672	52668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985_57152_58563_58836_59591
103333	chr15	-	2703	5	ISM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	3544	0	1420	0	3prime_fragment	FALSE	canonical	3	3946	junction_3	159.548386077704	1	144	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	3283	False	NA	NA	False	NA	NA	NA	36791238	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927
103334	chr16	+	1838	1	Intergenic	novelGene_3866	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	84	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGACTCAGCAATGGACAGA	9772	False	NA	NA	False	NA	NA	NA	93693011	93694849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_93693000_93694800
103335	chr11	+	1406	5	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-50	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1458.78586074173	1	33	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5356	False	NA	NA	False	NA	NA	NA	52251911	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251919_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103336	chr1	-	3438	15	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	21	-13	intron_retention	FALSE	canonical	0	0	junction_7	678.665095039144	1	93	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACATGTGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	20890463	20873242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880448_20882184_20882398_20882787_20882920_20883184_20883339_20884622_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
103337	chr11	-	1773	6	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	81	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGCGGCGCCTCAATC	NA	False	NA	NA	False	NA	NA	NA	75656413	75623762	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642906_75646398_75646504_75647640_75647847_75650114_75650253_75655443
103338	chr5	-	2171	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	263	184	263	-172	multi-exon	FALSE	canonical	3	916	junction_1	0	2	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTACCACCAAGAAGGTCAAA	NA	False	NA	NA	False	NA	NA	NA	125466815	125463212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
103339	chr4	+	3590	10	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-221269	182150	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	135.421791925801	2	52	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146365214	146806002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146365259_146603534_146603615_146611174_146611250_146616526_146616611_146619877_146620005_146621233_146621364_146802195_146802609_146802693_146803647_146803814_146804170_146804673
103340	chr4	+	3811	5	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-27125	1179	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	31.0352622028556	2	134	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATTATGTCCATCCGCTA	9722	False	NA	NA	False	NA	NA	NA	145524681	145557691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145524827_145541336_145541383_145551778_145551837_145552678_145552806_145554256
103341	chr2	-	3913	18	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	3	5	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_9	440.218520760725	1	138	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTGGTTATGGTAC	NA	False	NA	NA	False	NA	NA	NA	103627315	103595357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605844_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
103342	chr12	+	3335	10	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	51	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAACACAGAGGACGACTC	NA	False	NA	NA	False	NA	NA	NA	110656841	110662115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658088_110658551_110658880_110659035_110659305_110659451_110659602_110659745_110659937_110660144_110660311_110660456_110660776_110661002_110661137_110661483_110661852_110661951
103343	chr4	+	2847	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	-46	-3	1	3	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	2	120	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033868	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
103344	chr8	+	3826	20	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-1	-2098	intron_retention	FALSE	non_canonical	0	0	junction_16	1200.52049422895	22	131	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760546	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780536_111780641_111780756_111780852_111781161_111781246_111781702
103345	chr9	+	373	3	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	224	4	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTCCCATTTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	78385734	78387925	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78385893_78387622_78387710_78387797
103346	chr6	-	1142	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	81	5	81	-5	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	3	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTCGGGCTGATTGC	NA	False	NA	NA	False	NA	NA	NA	125471673	125437233	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
103347	chr15	-	2796	1	NIC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	12	-206	mono-exon_by_intron_retention	FALSE	NA	NA	NA	NA	NA	1	21	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGATTCTGTGGAAGGCG	170	False	NA	NA	False	NA	NA	NA	98832307	98829511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_98829500_98832300
103348	chr19	-	2087	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	82	448	-47	1	multi-exon	FALSE	canonical	3	2829	junction_2	225.154079188008	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGCCTGTGAATTATT	NA	False	NA	NA	False	NA	NA	NA	15902341	15882489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
103349	chr12	-	1433	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	38	1	-17	-1	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	168	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	111638734	111635795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
103350	chr8	+	3103	7	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-19	-2174	multi-exon	FALSE	canonical	0	0	junction_2	548.994054815006	1	105	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGACAGACAGACACACACA	NA	False	NA	NA	False	NA	NA	NA	19834742	20043714	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_19849538_19849605_20030550_20030924_20035860_20036160_20039783_20039904_20040764_20040983_20041811
103351	chrX	-	2091	1	ISM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	21888	24	21830	-24	mono-exon	FALSE	NA	NA	NA	NA	NA	2	46	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAACAAGATTCTGAAACA	NA	False	NA	NA	False	NA	NA	NA	93234427	93232336	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chrX_-_93232300_93234400
103352	chr8	-	2122	1	Antisense	novelGene_ENSMUSG00000031770.17_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	71	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGCCAGGCCCCAGGC	NA	False	NA	NA	False	NA	NA	NA	95120530	95118408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_95118400_95120500
103353	chr15	-	2062	1	Intergenic	novelGene_3260	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	97	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAACCCTTCAGTACTGG	9803	False	NA	NA	False	NA	NA	NA	22705087	22703025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22703000_22705100
103355	chr13	+	5217	1	Intergenic	novelGene_1558	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	221	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113855161	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113855200_113860400
103356	chr7	-	279	2	NNC	ENSMUSG00000038539.16	novel	1816	3	NA	NA	-12112	-3286	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAACCGCTCGCCCCTC	7495	False	NA	NA	False	NA	NA	NA	44478194	44465824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_44465908_44477998
103357	chr12	+	3041	27	NNC	ENSMUSG00000021048.8	novel	3241	28	NA	NA	8	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	433.056504847269	1	119	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTACCTTGGTGTTGAAAC	8034	False	NA	NA	False	NA	NA	NA	76302194	76366572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_76302319_76317191_76317277_76326188_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341173_76344251_76344359_76347161_76347239_76348031_76348208_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
103358	chr16	-	564	1	Intergenic	novelGene_3725	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	22	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
103359	chr11	+	1774	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-78	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1169.13077776193	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5328	False	NA	NA	False	NA	NA	NA	52251883	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52274670_52274905_52276409_52276561_52278242_52278301_52279258
103360	chr5	+	2997	18	NNC	ENSMUSG00000029267.18	novel	3732	17	NA	NA	7	32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	781.719557851809	2	73	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTGTGACTAGACTTCA	NA	False	NA	NA	False	NA	NA	NA	108213546	108255368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108215325_108215439_108217027_108217230_108221172_108221321_108228775_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
103361	chr3	+	1787	12	Antisense	novelGene_ENSMUSG00000002227.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	6	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCACAATGTGCTTCATGG	NA	False	NA	NA	False	NA	NA	NA	104702154	104708086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr3_+_104702556_104702639_104702765_104703011_104703099_104703175_104703300_104704077_104704156_104704283_104704477_104704589_104704713_104706713_104706924_104707012_104707110_104707259_104707366_104707590_104707748_104708000
103362	chr16	+	2590	10	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-1	intron_retention	FALSE	canonical	3	4	junction_2	789.822968131248	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927449_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
103363	chr4	+	2140	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16.5	1	118	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145159006	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145176036_145176245_145176328
103365	chr9	+	3383	30	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	-2	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.947650556986	1	59	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAACCAAAGAGTAGTTCA	NA	False	NA	NA	False	NA	NA	NA	72569717	72655438	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407_72654816_72655145
103366	chr16	+	564	1	Intergenic	novelGene_3726	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	23	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCATGGCGTGTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	57211475	57212039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_57211500_57212000
103367	chr17	+	1173	3	ISM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	42	737	42	-99	intron_retention	FALSE	canonical	3	4113	junction_2	34.5	1	22	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCGTGTGAGGTGGAGT	3078	False	NA	NA	False	NA	NA	NA	35816956	35820932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_35817381_35819999_35820121_35820304
103369	chr7	+	3371	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	7	-248	intron_retention	TRUE	non_canonical	0	0	junction_4	318.588684670376	1	102	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	NA	False	NA	NA	NA	103868050	103884111	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877604_103880995_103881097_103881319_103881347_103881573_103882787_103882829_103883293_103883405
103370	chr8	+	4131	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-3341	-2095	intron_retention	FALSE	canonical	0	0	junction_1	869.259762756446	2	151	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	111756434	111782201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111756549_111759816_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
103371	chr5	+	3231	20	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAATTTCAGCGACCGGAA	NA	False	NA	NA	False	NA	NA	NA	31314756	31337488	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315114_31315484_31315598_31315689_31315840_31316404_31316534_31316777_31316851_31317077_31317206_31317291_31317442_31323232_31323358_31323702_31323733_31325041_31325148_31325331_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31330729_31330855_31331110_31331436_31331577_31331839_31337226
103372	chr11	+	1881	15	NNC	ENSMUSG00000007739.11	novel	2484	14	NA	NA	-6	186	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1383.01914082111	20	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTAACTTGTCATTTTAAA	NA	False	NA	NA	False	NA	NA	NA	22940619	22953337	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_22940678_22940736_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
103373	chr5	+	3989	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	2	intron_retention	FALSE	canonical	0	0	junction_3	622.460948697235	12	9	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108208609	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
103374	chrM	+	791	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	151	13	151	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTGGAATAATCATAGTG	2	False	NA	-28	True	NA	NA	NA	220	1011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_200_1000
103375	chr11	+	1727	8	FSM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	34	-870	34	-4	multi-exon	FALSE	canonical	3	3141	junction_5	166.267181097786	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3573	False	NA	NA	False	NA	NA	NA	52265123	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103376	chr11	-	4894	14	NNC	ENSMUSG00000020719.15	novel	3593	12	NA	NA	-33	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1503.84445799629	1	164	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTCTTCATTTATTTAT	9232	False	NA	NA	False	NA	NA	NA	106679742	106671182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_106671468_106671540_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
103377	chr7	-	1386	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	113	12	0	-10	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	4	20	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAAGGGGGAGTCTGTTG	NA	False	NA	NA	False	NA	NA	NA	126398313	126394417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
103378	chr3	-	1682	12	NNC	ENSMUSG00000002227.16	novel	3498	20	NA	NA	16610	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	385.042232308557	1	62	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	104708060	104702151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704154_104704362_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002
103379	chr7	-	3047	28	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.188852574577511	1	11	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCCAAATTCGCGCCACACA	9273	False	NA	NA	False	NA	NA	NA	13045351	13012807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012884_13014071_13014148_13016378_13016469_13019182_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037219_13037723_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
103380	chr10	-	2474	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	598.112029639933	1	94	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	2	True	NA	NA	False	NA	NA	NA	128401840	128393636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395943_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
103381	chr5	+	1826	8	ISM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	5175	-62	4766	62	3prime_fragment	FALSE	canonical	3	3017	junction_3	223.417244871837	2	22	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCCAACACACACAATTTT	5522	False	NA	NA	False	NA	NA	NA	77104389	77115222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
103382	chr2	-	2373	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	-8	4	intron_retention	FALSE	canonical	0	0	junction_1	6313.26193421436	1	129	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTCCATTGCTTTTGTG	3751	False	NA	NA	False	NA	NA	NA	154734736	154713333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715464_154715555_154718542_154718593_154719590_154719740_154720389_154720485_154726273_154726367_154729623_154729728_154730102_154730281_154734609
103383	chr4	+	2808	11	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	387	3	NA	NA	-86280	61482	multi-exon	FALSE	non_canonical	0	0	junction_1	23.8696459965371	1	116	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAACCTTACAAATGCA	NA	False	NA	NA	False	NA	NA	NA	146500203	146804099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146500539_146597241_146597335_146697966_146698060_146700005_146700119_146729475_146729554_146739308_146739414_146740256_146740384_146741834_146742202_146802405_146802590_146802676_146803203_146803312
103384	chr4	+	1097	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTCTTCTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	91739881	91740978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739900_91741000
103385	chr2	-	2593	8	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	2233	multi-exon	FALSE	non_canonical	0	0	junction_1	59.3127305053477	3	48	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTTCTCTAAGGCCCC	NA	False	NA	NA	False	NA	NA	NA	156681710	156629498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156629506_156631635_156632366_156643024_156644098_156644205_156644337_156645656_156645724_156679742_156679834_156680337_156680457_156681335
103386	chr16	+	2579	8	NNC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	3	-1	intron_retention	FALSE	non_canonical	0	0	junction_6	847.176944628573	2	149	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATAGGTGGTCTGGCCAT	6880	False	NA	NA	False	NA	NA	NA	22927334	22932695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22927384_22927468_22927602_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930575_22930647_22931100
103387	chr16	+	1587	8	ISM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	999	0	195	0	3prime_fragment	FALSE	canonical	3	563	junction_1	518.386743972616	3	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	7072	False	NA	NA	False	NA	NA	NA	22927526	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
103388	chr4	+	2318	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-16	1	multi-exon	TRUE	non_canonical	0	0	junction_3	44.3824915428996	3	47	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	147209696	147669656	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536227_147665698_147665826_147667290_147667445_147667771_147668491_147668576
103389	chr14	-	4310	24	Antisense	novelGene_ENSMUSG00000088761.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	143	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTCCTCTCAGCGCTGAG	NA	False	NA	NA	False	NA	NA	NA	56725572	56640158	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_56640281_56658530_56658624_56661914_56662026_56663055_56663129_56665344_56665444_56668932_56669091_56671769_56671851_56672050_56672127_56676058_56676366_56678987_56679075_56697419_56697578_56699333_56699525_56700478_56700650_56703083_56703273_56705119_56705261_56708744_56708901_56712853_56712969_56715043_56715163_56718146_56718266_56719422_56719648_56720526_56720680_56720818_56720938_56722608_56722699_56724415
103390	chr2	+	1580	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	246	998	246	150	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	1	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGATGACTTGAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	29952110	29961591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
103391	chr9	-	1450	9	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	55	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	6704.01492460861	1	48	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCAAAAATCTGTCACAGA	7155	False	NA	NA	False	NA	NA	NA	78388951	78385788	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78385879_78386033_78386141_78386239_78386475_78386559_78386809_78386977_78387057_78387133_78387431_78387522_78387703_78387788_78387971_78388920
103392	chr4	+	2069	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6_ENSMUSG00000067919.9	novel	3993	5	NA	NA	-10	182330	multi-exon	TRUE	non_canonical	0	0	junction_1	199.2	2	30	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	2301	False	NA	NA	False	NA	NA	NA	147106324	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147106458_147316807_147316883_147342915_147342989_147416278_147417037_147417372_147418091_147600209
103393	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	61	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	87	True	NA	NA	NA	14144	15288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_14100_15300
103394	chrX	-	1655	2	NNC	ENSMUSG00000031422.17	novel	676	2	NA	NA	587	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	54	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGTGTTCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	135640645	135633691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135635251_135640549
103395	chr11	-	1516	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	0	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	892.32693560152	1	58	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAATTTTTCACAGGTCTG	9585	False	NA	NA	False	NA	NA	NA	5828212	5822201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823716_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
103396	chr9	+	4999	24	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-9	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	975.926003966177	1	209	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAAGCTGTGGCTCCGT	NA	False	NA	NA	False	NA	NA	NA	72569754	72657126	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577232_72577329_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632297_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
103397	chr11	+	1767	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	251	4	-24	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	1	48	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5382	False	NA	NA	False	NA	NA	NA	52251937	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103398	chr3	-	3272	24	NNC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	398	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	264.563377507803	1	54	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTTCTTTCCGTGCA	8121	False	NA	NA	False	NA	NA	NA	89955208	89913523	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924544_89926483_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076
103399	chr2	+	395	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11303	-22	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	13	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACCAACCTCATGGTCT	NA	False	NA	NA	False	NA	NA	NA	11413731	11426009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11413949_11421901_11422001_11425930
103400	chrX	+	2699	21	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	33	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	985.668549767111	1	59	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGGCTATTGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	20529169	20548449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537106_20537589_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542350_20547066_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347
103401	chr19	+	2769	11	Antisense	novelGene_ENSMUSG00000013662.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	8	80	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGTAGCCCGGCCTCGCA	825	False	NA	NA	False	NA	NA	NA	32649962	32689693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_+_32650966_32651124_32651761_32654112_32654249_32660948_32661111_32664623_32664721_32673189_32673299_32675839_32676039_32678917_32679040_32679936_32680038_32684233_32684408_32689663
103402	chr15	+	5105	3	Intergenic	novelGene_3227	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	4	232	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGGGCCCACGGTCATAC	NA	False	NA	NA	False	NA	NA	NA	22699827	22705045	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22701187_22701231_22704538_22704605
103403	chr17	+	971	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	230	1	199	-1	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	52	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTTGGTGTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	28547819	28550005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
103404	chr11	+	1718	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-57	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	1115.1969276769	3	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5349	False	NA	NA	False	NA	NA	NA	52251904	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274909_52276495_52276561_52278242_52278301_52279258
103405	chr4	+	3378	11	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_1	18.0055546984812	1	89	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	924	False	NA	NA	False	NA	NA	NA	145237358	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145239546_145239640_145241457_145241589_145243726_145243823_145295270_145295401_145299203_145300051_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350359
103406	chr13	+	3188	3	ISM	ENSMUSG00000062382.10_ENSMUSG00000076033.3	ENSMUST00000221435.2	491	4	-23	-2348	-23	1697	intron_retention	FALSE	canonical	3	85	junction_2	7	47	14	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTATTTTCAAAGAGGCAA	1224	False	NA	NA	False	NA	NA	NA	74547789	74557162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr13_+_74547912_74553897_74554023_74554221
103407	chr4	+	2452	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	2800	4	NA	NA	2083	182333	multi-exon	FALSE	non_canonical	0	0	junction_1	65.0864417368102	2	45	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	6193	False	NA	NA	False	NA	NA	NA	147316823	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147316901_147390101_147390233_147393100_147393137_147413438_147413566_147415724_147415877_147416295_147416805_147416984_147418031_147600150
103408	chr10	+	3132	18	Antisense	novelGene_ENSMUSG00000037012.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	103	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCACCTCCTCCTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	62105403	62175946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62105835_62107368_62107604_62110227_62110386_62111461_62111645_62116814_62116909_62117585_62117685_62120056_62120178_62120479_62120632_62122129_62122430_62125936_62126172_62128091_62128247_62131479_62131665_62131773_62131874_62132454_62132551_62134927_62135049_62140498_62140646_62151162_62151328_62175791
103409	chr16	+	1658	9	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-5	combination_of_known_splicesites	FALSE	canonical	3	7	junction_7	718.379676337659	1	48	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6053	False	NA	NA	False	NA	NA	NA	22926507	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930566_22930647_22931916
103410	chr17	-	2572	6	NNC	ENSMUSG00000024165.10	novel	2672	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	862.327408818715	1	76	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGCCAATATTTTTCT	4815	False	NA	NA	False	NA	NA	NA	25179621	25161443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_25163223_25163274_25163653_25164553_25164603_25167617_25167755_25174991_25175141_25179541
103411	chr5	-	2776	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	223	1553	-10	-114	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	1	85	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCTAGTCTGGGCCACA	NA	False	NA	NA	False	NA	NA	NA	31337265	31314901	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
103412	chr10	+	3004	15	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	2921.36122259079	10	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013496_81013714_81013886_81014053_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016831_81016884_81016992_81017061_81017245_81017326_81017460_81017722
103413	chr6	+	1975	8	NNC	ENSMUSG00000036371.7	novel	1336	8	NA	NA	-4	423	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2306.92194431083	1	79	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTTGTAAACTACTTATT	5862	False	NA	NA	False	NA	NA	NA	67243984	67261718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244401_67248245_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
103414	chr7	-	2208	10	NNC	ENSMUSG00000054808.16	novel	2581	14	NA	NA	-3835	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	457.207465672496	2	100	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTCTGGTGTCATCT	NA	False	NA	NA	False	NA	NA	NA	28601453	28592678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_28593630_28593955_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301
103415	chr17	+	2901	18	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-6	-25	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	734.484047892803	1	61	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAATAAAATTCTGGCC	493	False	NA	NA	False	NA	NA	NA	56610393	56630461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620256_56622203_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629670_56630248
103416	chr6	-	2010	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	40	35	-13	-35	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	1	85	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCATCTGTCGGGTGTGG	NA	False	NA	NA	False	NA	NA	NA	83294548	83282707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
103417	chr17	+	2620	18	NNC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	15	403	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	643.878317073367	2	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTTTTTTTTTGAGATG	1427	False	NA	NA	False	NA	NA	NA	56611327	56629742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616497_56616543_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
103418	chr11	+	1657	5	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	3	-220	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4382.02786960558	32	25	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACATATTTGACAGTATT	3038	False	NA	NA	False	NA	NA	NA	75623741	75656451	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642922_75647726_75647850_75650117_75650255_75655445
103420	chr12	-	1152	6	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	760	2	-34	-2	3prime_fragment	FALSE	canonical	3	7554	junction_4	347.928728333836	306	21	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638012	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858
103421	chr6	+	2157	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-10	0	-5	0	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	1	81	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3724	False	NA	NA	False	NA	NA	NA	117883745	117902580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
103422	chr3	-	2915	25	NNC	ENSMUSG00000042520.17	novel	3516	26	NA	NA	-4	-3059	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	392.593433677471	1	31	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAACCTTGGCCCAACCCC	3543	False	NA	NA	False	NA	NA	NA	89959786	89916585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922761_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935403_89935498_89935631_89935685_89938602_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
103423	chr15	-	3023	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	-89	-33	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_11	939.498754508074	1	122	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTATGCTGAAATAAAATAC	NA	False	NA	NA	False	NA	NA	NA	81283884	81247902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81280305_81280376_81283685
103424	chr4	+	2486	9	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.4469859519584	1	68	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145311767	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145311905_145312571_145312707_145314001_145314095_145322279_145322345_145343687_145343750_145347143_145347255_145348721_145348860_145349519_145349767_145350417
103426	chr3	-	2903	14	NNC	ENSMUSG00000028100.12	novel	1110	8	NA	NA	1169	9644	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	152	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCGGGCCTGAGCTCCGC	NA	False	NA	-8	True	NA	NA	NA	96613390	96603738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_96603847_96606734_96607153_96607307_96607391_96607530_96607580_96607800_96607895_96608600_96608747_96608937_96609038_96609489_96609563_96609671_96609833_96610840_96610943_96611052_96611222_96611372_96611506_96611661_96611700_96612161
103427	chr1	-	2978	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	53	0	1	0	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	1	120	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	20890483	20873191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
103429	chr16	-	564	1	Intergenic	novelGene_3727	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
103430	chr11	-	884	1	Antisense	novelGene_ENSMUSG00000037331.16_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	31	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGGGGGCGAGGGGAGAGG	NA	False	NA	NA	False	NA	NA	NA	57951059	57950175	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_57950200_57951100
103431	chr9	+	990	9	NNC	ENSMUSG00000032602.7	novel	1783	9	NA	NA	-2656	13960	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	297.273416865686	5	3	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATAGTGTTTTATAGAC	NA	False	NA	NA	False	NA	NA	NA	108547038	108575800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030_108561164_108575607
103432	chr4	+	2176	7	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	-12	-1902	multi-exon	TRUE	non_canonical	0	0	junction_2	44.5446093508768	21	47	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146200116	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146291416_146291489_146388486_146388614_146390758_146390897_146391562_146392337_146392757_146393454_146552634
103433	chr5	+	1692	1	ISM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	6731	5	2164	-5	mono-exon	FALSE	NA	NA	NA	NA	NA	1	99	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTATGGTGGTGCATTC	4830	False	NA	64	True	NA	NA	NA	138176994	138178686	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_138177000_138178700
103434	chr4	+	2480	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	100	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	41.6443273447897	1	64	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216594	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147534439_147534577_147578832_147578927_147639766_147639908_147661528_147661587_147665698_147665826_147667290_147667436_147667927_147668422_147668589
103435	chr4	+	4040	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159917	182155	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	9.17627820157241	2	149	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146426566	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146428065_146428160_146616526_146616752_146621270_146621288_146802110_146802585_146802671_146803281_146803449_146803953_146804037
103436	chr4	+	2222	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5_ENSMUSG00000066007.16	novel	4244	5	NA	NA	17	-1876	multi-exon	TRUE	non_canonical	0	0	junction_1	38.0266313438099	1	42	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146093410	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093444_146206948_146207223_146207708_146207838_146291416_146291510_146293441_146293496_146388486_146388614_146390758_146390897_146391646_146392071_146392742_146393429_146552609
103437	chr17	+	1986	7	NNC	ENSMUSG00000095990.2	novel	2684	4	NA	NA	79	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	102.092550604287	1	63	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGTCACCTTCTAAGGG	NA	False	NA	NA	False	NA	NA	NA	17341755	17367091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17341800_17342063_17342203_17362997_17363125_17363366_17363428_17364720_17365930_17366179_17366346_17366851
103438	chr5	-	1550	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	1	0	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	1	53	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	8919	False	NA	NA	False	NA	NA	NA	142892479	142888869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890215_142891008_142891232_142891318_142891448_142892406
103439	chr12	-	1587	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	139	2	83	-2	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	38	30	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638633	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
103440	chr10	+	3029	13	NIC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	7	-7	intron_retention	FALSE	canonical	3	966	junction_8	235.018128733367	3	78	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTTACACTCCTGCCTG	1568	False	NA	NA	False	NA	NA	NA	79690445	79700259	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698704_79698811_79698890_79698978
103441	chr7	-	3011	27	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.192307692307692	2	126	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGCGGGGGCCTGCGAGT	9295	False	NA	NA	False	NA	NA	NA	13045329	13012747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13012886_13014072_13014147_13016376_13016462_13019176_13019320_13020491_13020608_13022581_13022690_13023323_13023419_13025109_13025247_13025384_13025457_13026063_13026147_13029292_13029505_13030203_13030321_13030645_13030720_13032659_13032755_13032966_13033063_13034183_13034264_13034850_13034971_13035307_13035406_13037108_13037219_13037723_13037796_13039833_13039979_13040135_13040211_13041430_13041600_13042396_13042444_13043032_13043179_13044931_13045024_13045117
103442	chr7	+	2674	24	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	15	1793	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	469.473799474683	1	108	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATGTGATCTAGTAGCTT	2644	False	NA	-93	True	NA	NA	NA	13012775	13041729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012886_13014073_13014141_13016378_13016469_13019182_13019319_13020483_13020611_13022593_13022686_13023313_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443
103443	chr4	+	3620	10	Fusion	ENSMUSG00000058186.14_ENSMUSG00000078502.11	novel	1938	3	NA	NA	8	-6	multi-exon	TRUE	non_canonical	0	0	junction_2	121.502730752222	2	114	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	145311780	145431005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145314001_145314095_145399313_145399395_145406465_145406546_145414687_145414763_145422720_145422803_145425813_145425941_145427474_145428402_145428822_145429246_145429575
103444	chr2	-	3077	17	NNC	ENSMUSG00000026669.15	novel	3494	20	NA	NA	-3287	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	339.50220337098	1	125	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	NA	False	NA	NA	NA	5013417	4995534	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_4996288_4997654_4997835_4998549_4998668_4999380_4999494_5000531_5000677_5001914_5002132_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011875_5011999_5012146_5012244_5013290
103445	chr4	+	1500	11	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	-28	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6072.93099005744	1	58	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTCCACCAGTGTGCTG	NA	False	NA	NA	False	NA	NA	NA	150321668	150333321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328520_150329668_150329795_150331026_150331225_150331907_150332110_150332287_150332376_150332505_150332577_150332942
103446	chr11	-	1697	4	ISM	ENSMUSG00000048076.15	ENSMUST00000163300.8	1991	5	14644	2	14644	0	3prime_fragment	FALSE	canonical	3	2258	junction_1	47.7935374524864	2	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	NA	False	NA	NA	False	NA	NA	NA	59104344	59102239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165
103447	chrX	-	1642	12	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	40	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCATTGGCCACACCATC	NA	False	NA	NA	False	NA	NA	NA	20548942	20541973	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20541993_20542125_20542309_20544431_20544501_20544825_20545022_20545627_20545705_20545831_20546020_20547019_20547120_20547355_20547438_20547559_20547762_20548144_20548242_20548345_20548449_20548616
103448	chr16	+	3876	7	NIC	ENSMUSG00000022884.17	novel	1737	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	563	junction_1	533.343229074861	1	98	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
103449	chr1	+	2375	11	NNC	ENSMUSG00000026687.15	novel	2835	11	NA	NA	-32	-246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	208.553110741605	1	135	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCTGTGTTTTTCTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	167177772	167195855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183373_167184096_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
103450	chrX	-	1739	1	Antisense	novelGene_ENSMUSG00000079297.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTTAAAATGTTTTAAACAT	NA	False	NA	NA	False	NA	NA	NA	32944734	32942995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_32943000_32944700
103451	chr5	+	1742	5	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCGGCTTTGCACATGCCG	NA	False	NA	NA	False	NA	NA	NA	142888877	142891380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320
103452	chr3	+	984	2	Genic_Genomic	ENSMUSG00000096544.3	novel	331	1	NA	NA	-67	672	multi-exon	FALSE	canonical	0	0	junction_1	0	2	36	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CTAACAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124179248	124180318	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_124179493_124179578
103453	chr5	-	2051	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-83	81	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	15	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833638	5831533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5832444_5832497
103454	chr10	-	2056	4	ISM	ENSMUSG00000047146.18	ENSMUST00000050826.14	13986	11	40388	17771	-25085	-8993	internal_fragment	FALSE	canonical	3	109	junction_1	11.4406682011537	1	83	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCCCCTACACCTGCAGTG	NA	False	NA	NA	False	NA	NA	NA	62675405	62658119	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr10_-_62658540_62668672_62668767_62669316_62669408_62673954
103455	chr15	+	4019	2	Intergenic	novelGene_3241	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	58	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22700893	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22701791_22701973
103456	chr4	-	2436	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	29	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	444.152774954745	2	83	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCCAGAGCTGAGTCTT	NA	False	NA	NA	False	NA	NA	NA	137523666	137469050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471005_137471054_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
103457	chr12	+	5103	1	Intergenic	novelGene_4396	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	211	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	68605168	68610271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605200_68610300
103458	chr11	+	1620	10	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-73	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1053.90480278502	32	24	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5333	False	NA	NA	False	NA	NA	NA	52251888	52280224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279458_52279657
103459	chr15	-	5082	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	3	263	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACAACAAGACCGTTTT	9886	False	NA	NA	False	NA	NA	NA	22705004	22699829	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
103460	chr17	+	2183	8	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	44	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	826.86047486741	2	87	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGTGGCGCACGTCTT	543	False	NA	NA	False	NA	NA	NA	56610443	56630483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619926_56629030_56629121_56629355
103461	chr2	-	1314	2	Antisense	novelGene_ENSMUSG00000059005.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	63	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGGAAATAACACATAACAGT	NA	False	NA	NA	False	NA	NA	NA	75496986	75495576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_75495644_75495739
103462	chr11	-	2888	17	NNC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	24	-3	intron_retention	FALSE	canonical	0	0	junction_15	325.072203517926	1	73	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAAAATTTGACTTTGCT	NA	False	NA	NA	False	NA	NA	NA	70860756	70833910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70836188_70838527_70838630_70840098_70840369_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858669_70858844_70860474
103463	chr9	-	3046	11	NNC	ENSMUSG00000036986.17	novel	4481	9	NA	NA	21	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	134.045850364717	1	141	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCTATTTCATGTCTGT	2172	False	NA	NA	False	NA	NA	NA	58157048	58125831	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_58126012_58126793_58126953_58127105_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140519_58141629_58142217_58154257_58154722_58156823
103464	chr11	+	1797	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	221	4	-54	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	5	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5352	False	NA	NA	False	NA	NA	NA	52251907	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103465	chrX	-	2787	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	51	10	-6	-10	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	6	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTTTTACAGTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	158921358	158905214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
103466	chrM	+	1207	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	375	0	-375	mono-exon	FALSE	NA	NA	NA	NA	NA	2	59	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTACAAGTCAAAGTAAAATC	-3	True	NA	22	True	NA	NA	NA	1093	2300	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_1100_2300
103467	chr1	+	3661	9	Antisense	novelGene_ENSMUSG00000026235.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	150	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCACCTGTGGGAGAAG	NA	False	NA	NA	False	NA	NA	NA	77343820	77364611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_77346307_77349545_77349591_77350304_77350485_77351408_77351564_77354050_77354244_77357497_77357653_77359513_77359726_77360165_77360224_77364434
103468	chr8	+	4228	16	NNC	ENSMUSG00000000303.13	novel	4430	16	NA	NA	-7	-9	intron_retention	FALSE	non_canonical	0	0	junction_9	260.201579976414	1	125	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACTGTTGTGAGGCTCA	5070	False	NA	NA	False	NA	NA	NA	107330003	107396869	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386409_107387603_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
103469	chr6	-	2658	7	ISM	ENSMUSG00000003153.11	ENSMUST00000168704.8	6253	9	5220	664	-4126	-664	3prime_fragment	FALSE	canonical	3	8407	junction_1	434.273979060326	1	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCCTCTGCTAGGTGGA	NA	False	NA	NA	False	NA	NA	NA	122714261	122705448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016
103470	chr19	-	1525	14	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	26	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1428.32897773554	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGCTGCCCTCAATCC	3789	False	NA	NA	False	NA	NA	NA	7017309	6998290	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998337_6999144_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003753_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011671_7012014_7012157_7012863_7013074_7017247
103471	chr9	+	1229	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	-1	-152	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8600.53738235618	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACCCTTGTGTGACTCT	NA	False	NA	NA	False	NA	NA	NA	64080655	64085796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083571_64084628_64084760_64085168_64085300_64085504
103472	chr6	+	2367	5	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	967	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2488.48523202369	2	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	4755	False	NA	NA	False	NA	NA	NA	117884776	117902580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117885134_117894430_117894560_117896059_117896121_117900668_117901843_117901934
103473	chr2	+	1959	8	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	1007	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	525.410160479119	1	74	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGCCCCTAGGTGTCT	3239	False	NA	NA	False	NA	NA	NA	26281945	26287136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285130_26285933
103474	chr2	+	645	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11287	214	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	36	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCCCCCCCCCACTTCTC	NA	False	NA	NA	False	NA	NA	NA	11413747	11426245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11413988_11425840
103475	chr17	+	1007	1	Intergenic	novelGene_233	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	54	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGGAGCTGTGGTTTGG	NA	False	NA	NA	False	NA	NA	NA	40154932	40155939	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40154900_40155900
103476	chr16	+	1385	6	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	26	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAACGTCTAGATTGCTG	5601	False	NA	NA	False	NA	NA	NA	22064612	22071402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065615_22065937_22066016_22067187_22067248_22067801_22067886_22069615_22069730_22071355
103477	chr4	-	2684	10	Fusion	ENSMUSG00000078495.11_ENSMUSG00000062518.8	novel	2729	6	NA	NA	-10	-194	multi-exon	TRUE	non_canonical	0	0	junction_1	92.4787596567683	2	52	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGATGAAGATAAGTTAGG	9513	False	NA	NA	False	NA	NA	NA	147894255	147758152	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147758759_147759766_147760027_147839206_147840218_147840541_147840693_147842158_147842286_147845677_147845734_147889666_147889780_147891546_147891641_147893153_147893289_147894124
103478	chr6	-	2141	4	Genic_Genomic	ENSMUSG00000107608.2	novel	1192	1	NA	NA	-7901	-475	multi-exon	FALSE	non_canonical	0	0	junction_1	13.6707311029399	2	64	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGACTGGGGTCACGGGGTG	5173	False	NA	NA	False	NA	NA	NA	117902584	117893966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_117894032_117894429_117894541_117896072_117896126_117900672
103479	chrX	+	2964	3	Intergenic	novelGene_3948	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	36.5	2	114	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAACTCAGCTACTCG	NA	False	NA	NA	False	NA	NA	NA	63977048	63982096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_63977469_63977519_63979366_63981398
103480	chr16	+	2317	10	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	774.977530538471	5	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927470_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22931212_22931916
103481	chr14	-	5945	20	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-60	8534	intron_retention	FALSE	non_canonical	0	0	junction_1	74.6799264377141	6	111	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCGTAGGAGTCGCAGAAG	NA	False	NA	NA	False	NA	NA	NA	54655297	54598364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607666_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54651336_54651471_54654045
103483	SIRV5	+	1780	13	NNC	SIRV5A	novel	2029	16	NA	NA	0	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	2692.015244457	9	31	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATAGGTTTACCGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	1000	10985	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1087_3350_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
103484	chr8	-	700	6	Antisense	novelGene_ENSMUSG00000098550.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACCGGGCACCGCAAAGC	NA	False	NA	NA	False	NA	NA	NA	123831974	123829155	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_123829187_123829394_123829502_123829585_123829723_123829919_123830094_123830633_123830699_123831788
103485	chrX	+	4457	2	Intergenic	novelGene_4040	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	71	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCATTTGGTGTTTTGATT	NA	False	NA	NA	False	NA	NA	NA	120859722	120871873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_120864161_120871854
103486	chr3	+	1727	10	NNC	ENSMUSG00000027804.14	novel	1752	10	NA	NA	24	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	817.248923198517	1	97	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCATCTCTGGATGTCCTT	NA	False	NA	NA	False	NA	NA	NA	79498695	79510952	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505185_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
103487	chr7	+	3738	21	Genic_Genomic	ENSMUSG00000109168.2	novel	448	2	NA	NA	1383	19891	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGCGAGAACTGGCGCGTC	NA	False	NA	NA	False	NA	NA	NA	28015705	28038189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_28015870_28016211_28016314_28016409_28016541_28016640_28016928_28017163_28017247_28018163_28018289_28018378_28019541_28019646_28019794_28021419_28021564_28021643_28021739_28021888_28021993_28023148_28023224_28023320_28023379_28025350_28025627_28028127_28028215_28028675_28028909_28029006_28029079_28029991_28030074_28030797_28030953_28037774_28037861_28038119
103488	chr5	-	543	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	32	1565	0	-8	5prime_fragment	FALSE	canonical	3	4052	junction_1	18.0616229121921	1	11	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACGGGGTCACCCACACT	8921	False	NA	NA	False	NA	NA	NA	142892477	142890434	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142890538_142890991_142891232_142891318_142891448_142892406
103489	chr16	+	1698	10	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	2	-5	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_6	751.523193994112	3	67	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6076	False	NA	NA	False	NA	NA	NA	22926530	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22930252_22930343_22930566_22930647_22931100_22931212_22931916
103490	chr4	-	3036	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	-67	4508	-67	-27	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	1	129	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTAAATAAAACTGATTTA	NA	False	NA	NA	False	NA	NA	NA	148711543	148701346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
103491	chr11	-	1889	4	ISM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	986	2	986	-2	intron_retention	FALSE	canonical	3	3182	junction_2	100.883871632464	1	95	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGATTGTGTGGTCTGT	NA	False	NA	NA	False	NA	NA	NA	120471220	120468936	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792
103492	chr15	+	4198	1	Intergenic	novelGene_3240	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	188	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGAGTAGCTGGGTAAG	NA	False	NA	NA	False	NA	NA	NA	22700893	22705091	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22700900_22705100
103493	chr6	+	4554	13	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	228	75	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGAGGGAACAAGGATC	527	False	NA	73	True	NA	NA	NA	122294706	122314461	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297283_122297896_122298009_122298827_122299431_122299965_122300777_122302418_122302908_122309478_122309637_122310249_122310400_122311028_122311112_122311933_122312042_122313815
103494	chr12	-	1423	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2683.04605298697	198	71	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636264_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
103495	chr5	-	3351	16	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23745	45622	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	93	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCCCAATGACTATTACAA	NA	False	NA	NA	False	NA	NA	NA	108256651	108208609	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228887_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248857_108251891_108251983_108252127_108252178_108252289_108252395_108254452_108255174_108255548
103496	chr13	-	2902	16	NNC	ENSMUSG00000021546.19	novel	2970	18	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_15	2745.25999902053	1	13	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTTTTGTGTGTGTGTGT	4751	False	NA	NA	False	NA	NA	NA	58550330	58538954	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877_58549932_58550206
103497	SIRV5	+	1243	12	NNC	SIRV5A	novel	1890	17	NA	NA	6	3670	intron_retention	FALSE	non_canonical	0	0	junction_4	4038.55875200404	1	29	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATCCGTATGGCGATCT	NA	False	NA	NA	False	NA	NA	NA	1062	7268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2316_3298_3394_3483_3644_5380_5455_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144
103499	chr11	+	2065	1	Intergenic	novelGene_2362	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	81	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCCCCGAGTAGCTGGGT	NA	False	NA	NA	False	NA	NA	NA	57448850	57450915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57448800_57450900
103500	chrX	+	3275	26	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	16	324	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_18	781.888497421467	1	96	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCCCAGTCCTCCCTCC	NA	False	NA	NA	False	NA	NA	NA	20524675	20548768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545637_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
103501	chr5	-	5144	1	Intergenic	novelGene_743	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	253	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAATAAAATTTGAGCCT	NA	False	NA	NA	False	NA	NA	NA	89356923	89351779	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr5_-_89351800_89356900
103502	chr7	+	663	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-17	586	-17	-586	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGCCCAGAACATCATCC	NA	False	NA	NA	False	NA	NA	NA	51396377	51397040	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397000
103503	chr4	-	1735	5	Fusion	ENSMUSG00000078495.11_ENSMUSG00000062518.8	novel	2405	4	NA	NA	-11	-50	multi-exon	TRUE	non_canonical	0	0	junction_1	8.52936105461599	1	76	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATTGTCCTGTAACT	8362	False	NA	NA	False	NA	NA	NA	147860301	147758008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147758682_147839795_147840029_147840112_147840693_147845677_147845792_147860166
103505	chr16	+	3905	18	Genic_Genomic	ENSMUSG00000115923.2	novel	600	2	NA	NA	-36947	-110	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	135	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCAATGAATGGGGACTC	NA	False	NA	NA	False	NA	NA	NA	16130119	16176765	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr16_+_16131904_16132123_16132290_16134199_16134308_16134465_16134641_16136625_16136712_16137315_16137372_16139446_16139538_16141190_16141290_16141489_16141641_16141837_16141960_16147666_16147869_16149859_16149997_16151692_16151817_16154719_16154876_16156452_16156541_16158858_16158932_16163861_16164006_16176622
103506	chr18	+	6443	7	NNC	ENSMUSG00000042439.14	novel	5471	8	NA	NA	113	12	intron_retention	FALSE	canonical	0	0	junction_3	35.8860077962924	1	281	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTATTGGTGGGTCTCTG	NA	False	NA	NA	False	NA	NA	NA	65715796	65822024	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_65715881_65715967_65716078_65756054_65758406_65771823_65772003_65777263_65777441_65815965_65816079_65818595
103508	chr3	+	4128	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	178	12	-3	-12	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	1	140	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGACACTAGCACCTAG	NA	False	NA	NA	False	NA	NA	NA	102927919	102965490	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
103509	chr3	-	1744	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	147	0	147	0	multi-exon	TRUE	canonical	3	297	junction_6	40.0710618776194	126	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	NA	False	NA	NA	NA	30701871	30678415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
103510	chr13	+	2615	1	Intergenic	novelGene_1560	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	86	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	113857763	113860378	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_113857800_113860400
103511	chr7	-	922	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	45	1	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	7359.57672393974	61	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	NA	False	NA	NA	NA	45109263	45107368	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
103512	chrX	+	2332	10	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	757	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1554.66959690976	1	96	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCATTTTCTGTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	100474097	100492191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486634_100486906_100487098_100487882_100487968_100488293_100488424_100489724_100489835_100491199
103513	chr4	-	3479	8	Antisense	novelGene_ENSMUSG00000081522.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	119	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATGGGATGGCGGAAC	NA	False	NA	NA	False	NA	NA	NA	146135317	146093403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146093541_146094917_146095020_146126782_146126865_146129874_146130003_146131534_146132115_146132194_146132782_146132950_146133247_146133750
103514	chr9	+	4869	20	NNC	ENSMUSG00000042557.15	novel	4845	20	NA	NA	7	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	116.75402085171	111	102	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTAACATAAGTCCCTTG	NA	False	NA	NA	False	NA	NA	NA	56993871	57035645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017867_57018437_57020829_57021000_57024665_57024840_57025353_57025449_57026376_57026472_57032452_57032733_57034464
103515	chr1	-	3630	14	Intergenic	novelGene_428	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	124	7	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCAACCCTGGCCGCCGT	NA	False	NA	NA	False	NA	NA	NA	118607306	118555723	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_118555817_118559958_118560122_118580028_118580106_118580596_118580703_118581443_118581549_118584090_118584249_118586735_118586847_118589707_118589847_118592626_118592714_118593831_118593937_118596359_118596464_118597117_118597260_118603302_118603355_118605118
103516	chr17	+	1084	2	Intergenic	novelGene_81	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	39	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAAGTAAAATAATAG	NA	False	NA	NA	False	NA	NA	NA	23095194	23097164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_23095458_23096343
103517	chr8	+	5354	17	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	7	-2098	intron_retention	FALSE	canonical	0	0	junction_12	1163.88846517826	16	88	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760517	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111775374_111777701_111777999_111778905_111779154_111779822_111780641_111780756_111780844_111781140
103518	chr11	+	1611	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-11	-281	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	5102.83593265113	2	42	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAATGCCAAATATATC	3072	False	NA	NA	False	NA	NA	NA	75623775	75656390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646446_75646507_75647642_75647834_75650117_75650255_75655445_75655960_75656023
103519	chr2	-	1581	10	Antisense	novelGene_ENSMUSG00000099091.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	68	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCTGGGACAAGATTGAA	7957	False	NA	NA	False	NA	NA	NA	162924487	162904363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_162904467_162906196_162906426_162910100_162910234_162914541_162914834_162916300_162916724_162917558_162917689_162919704_162919754_162921511_162921623_162922649_162922742_162924468
103520	chr4	+	1996	7	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-2	0	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	1	59	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147576871	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577081_147578832_147578926_147637751_147637869_147665698_147665826_147667290_147667445_147668191_147668422_147668589
103521	chr4	+	2468	11	Fusion	ENSMUSG00000067919.9_ENSMUSG00000078496.10_ENSMUSG00000065999.14_ENSMUSG00000078498.6_ENSMUSG00000087207.9	novel	3993	5	NA	NA	14	-5	multi-exon	TRUE	non_canonical	0	0	junction_2	135.465272302535	2	48	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	2297	False	NA	NA	False	NA	NA	NA	147106320	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147106458_147107818_147107913_147219028_147219122_147224494_147224500_147337800_147337859_147413438_147413566_147596801_147596997_147597078_147597092_147599102_147599263_147667896_147668422_147668589
103522	chr4	+	2585	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	95	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	41.6443273447897	1	80	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216589	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147534439_147534577_147578832_147578926_147639766_147639865_147651591_147651652_147661528_147661587_147665698_147665826_147667290_147667431_147668006
103523	chr11	+	2592	1	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	56	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTTGTCAACTGAGGGA	9532	False	NA	NA	False	NA	NA	NA	120467652	120470244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120467700_120470200
103524	chr11	+	1816	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	4	-73	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	19	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103526	chr1	+	3458	14	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-8	6	combination_of_known_junctions	FALSE	canonical	3	277	junction_4	39.7596328248497	1	83	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATACATGCTTGTTTGTAA	NA	False	NA	NA	False	NA	NA	NA	132405164	132433403	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
103527	chr13	+	1105	6	Genic_Genomic	ENSMUSG00000114625.2	novel	682	1	NA	NA	-11028	307	multi-exon	TRUE	non_canonical	0	0	junction_4	76.7369532884907	1	54	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66045008	66057025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_+_66045092_66052247_66052375_66052573_66052635_66054190_66054420_66055180_66055474_66056713
103528	chr11	+	1765	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-26	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1114.85071169866	1	56	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5380	False	NA	NA	False	NA	NA	NA	52251935	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274680_52274905_52276409_52276561_52278242_52278301_52279258
103529	chr10	-	2638	11	NNC	ENSMUSG00000035835.15	novel	3063	9	NA	NA	2920	1680	intron_retention	FALSE	non_canonical	0	0	junction_1	0	37	27	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCGTTGCTGACACACGTG	NA	False	NA	NA	False	NA	NA	NA	79700195	79694628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_79694647_79694771_79695105_79695183_79695354_79695432_79695544_79695612_79695789_79695949_79696025_79696653_79696802_79698280_79698375_79698485_79698704_79698811_79698890_79698978
103531	chrX	-	6760	5	Intergenic	novelGene_3906	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	164	1	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGATCCACTCACAGAGG	NA	False	NA	NA	False	NA	NA	NA	34292631	33940159	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_33940586_33943356_33946051_34126223_34126466_34244044_34244366_34289554
103532	chr10	+	4216	9	NIC	ENSMUSG00000037608.17	novel	3164	13	NA	NA	-3	1	intron_retention	FALSE	canonical	3	221	junction_3	240.748182755343	3	95	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATTGCTGTTTTTGTTTTC	2802	False	NA	NA	False	NA	NA	NA	20188226	20209637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137
103533	chr11	+	4195	1	Intergenic	novelGene_2349	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	177	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGAGGACTGTGGCGCCC	NA	False	NA	NA	False	NA	NA	NA	57446707	57450902	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57446700_57450900
103535	chr9	+	1030	1	FSM	ENSMUSG00000079225.4	ENSMUST00000183511.2	775	1	42	-297	42	6	mono-exon	FALSE	NA	NA	NA	NA	NA	2	32	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAGAAACTTCAAGG	NA	False	NA	NA	False	NA	NA	NA	81559706	81560736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_81559700_81560700
103536	chr15	+	1666	9	ISM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	624	-2	584	2	3prime_fragment	FALSE	canonical	3	9291	junction_6	1634.02721443065	3	85	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAATGACAACTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	103149504	103153384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
103537	chr5	-	3139	16	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23903	45628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256493	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208729_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247053_108248678_108248857_108251891_108251991_108252130_108252184_108252290_108252396_108254452_108255080_108255527
103538	chr5	-	3658	3	FSM	ENSMUSG00000029580.15	ENSMUST00000165629.2	861	3	-50	-2747	0	1096	multi-exon	FALSE	canonical	3	4070	junction_2	13	89	34	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAACAAAAGTCCTTAAG	8921	False	NA	NA	False	NA	NA	NA	142892477	142887773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_142891232_142891318_142891448_142892406
103539	chr9	+	2186	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	212	34	4	-34	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	24	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAATGTCAATAAACAGCA	1876	False	NA	NA	False	NA	NA	NA	59563862	59586624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
103541	chr10	+	3739	10	Antisense	novelGene_ENSMUSG00000047146.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	123	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCCACCGGATTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	62647005	62674393	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649189_62649353_62649596_62650207_62650351_62652160_62652259_62654732_62654823_62655258_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955
103543	chr4	+	2528	10	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	28	-1901	multi-exon	TRUE	non_canonical	0	0	junction_2	39.768776138518	1	96	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146200156	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146291416_146291510_146365127_146365259_146368115_146368209_146384369_146384431_146388486_146388614_146390758_146390897_146391562_146392407_146392742_146393458_146552638
103544	chr7	-	4097	3	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	5825	6	559	-6	intron_retention	FALSE	canonical	3	6323	junction_2	119	28	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGATGTAGTTGTACATG	NA	False	NA	NA	False	NA	NA	NA	110676399	110671144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_110671965_110673035_110673158_110673244
103545	chrX	-	5181	1	Intergenic	novelGene_4010	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	255	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGAAAGCTTCATGGC	NA	False	NA	NA	False	NA	NA	NA	116231727	116226546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116226500_116231700
103546	chr5	-	3197	4	NIC	ENSMUSG00000029580.15	novel	894	5	NA	NA	0	1086	intron_retention	FALSE	canonical	3	4052	junction_1	18.0616229121921	30	43	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGACACCGCCTTAAACAAA	8918	False	NA	NA	False	NA	NA	NA	142892480	142887783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_142890538_142890991_142891232_142891318_142891448_142892406
103547	chr10	-	1449	10	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-1	116	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	648.11106348934	1	28	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGAGATTTCTGATCTT	NA	False	NA	NA	False	NA	NA	NA	127358256	127353485	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354792_127355505_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
103548	chr8	-	1286	4	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	3	-381	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3594.30169388529	3	61	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACACTTTATCTCCCTGCC	NA	False	NA	NA	False	NA	NA	NA	46664064	46660214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661576_46662058_46662540_46663843
103549	chr9	+	1920	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	273	4	-37	-4	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATTTCCTGTATTCTCTT	NA	False	NA	NA	False	NA	NA	NA	108183600	108215129	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
103550	chr16	+	1710	9	NNC	ENSMUSG00000022884.17	novel	2208	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	720.110755370311	1	76	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930030_22930536_22930647_22931916
103551	chr10	+	3224	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-33	intron_retention	FALSE	non_canonical	0	0	junction_5	2532.94322569918	2	39	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGGAGTAATAAACTACAG	2196	False	NA	NA	False	NA	NA	NA	81012479	81018299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81014951_81015025_81015094_81015184_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326
103552	chrM	+	1499	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	117	-71	117	71	mono-exon	FALSE	NA	NA	NA	NA	NA	7	49	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATATTAGTAAAATCAATTA	38	False	NA	NA	False	NA	NA	NA	5444	6943	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_5400_6900
103553	chr12	+	1954	11	NNC	ENSMUSG00000020649.12	novel	2193	10	NA	NA	80	-69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	1908.10962997413	1	69	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGAATTAACAGTCTTGAA	NA	False	NA	NA	False	NA	NA	NA	24758319	24764076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078_24763911_24764000
103554	chr3	+	2877	26	ISM	ENSMUSG00000027751.14	ENSMUST00000197502.5	2751	27	242	-125	-56	-1	3prime_fragment	FALSE	canonical	3	259	junction_19	83.2281106357702	1	81	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGTGTCTGTTCAT	NA	False	NA	NA	False	NA	NA	NA	54600469	54636182	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629941_54630062_54633390_54633497_54634989_54635118_54635764
103555	chr15	-	2232	7	NIC	ENSMUSG00000060036.15	novel	1877	9	NA	NA	1	-251	intron_retention	FALSE	canonical	3	16287	junction_6	5731.49048871428	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACCTCCAAATTTGGCCAT	3572	False	NA	NA	False	NA	NA	NA	79967553	79962246	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965985_79966590_79966784_79967524
103556	chr4	+	2568	10	Fusion	ENSMUSG00000067919.9_ENSMUSG00000078496.10_ENSMUSG00000065999.14_ENSMUSG00000078498.6_ENSMUSG00000087207.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-2	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	142.574044007636	1	64	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147056430	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056568_147058404_147058498_147106325_147106458_147219028_147219098_147337800_147337859_147413438_147413566_147596801_147597082_147599176_147599263_147667896_147668422_147668589
103557	chr12	+	2476	10	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	60	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGCGCCGCCCCCTGCGCC	NA	False	NA	NA	False	NA	NA	NA	110658046	110662743	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658088_110658551_110658883_110659041_110659599_110659743_110660311_110660456_110660776_110661002_110661133_110661494_110661630_110661676_110661852_110661951_110662115_110662685
103558	chr7	-	1368	8	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	-12	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	7110.3273468661	7	45	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAACTATTTAAGGG	NA	False	NA	NA	False	NA	NA	NA	126398354	126394428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395730_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
103559	chr17	+	2898	15	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	838.077939485977	1	73	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	498	False	NA	NA	False	NA	NA	NA	56610398	56630486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625153_56625246_56625385_56627161_56627247_56629656
103560	chr4	+	2351	11	Fusion	ENSMUSG00000070605.5_ENSMUSG00000066007.16	novel	4244	5	NA	NA	17	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	36.3	5	44	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146093410	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146093479_146207725_146207846_146291416_146291510_146293441_146293573_146368115_146368200_146388558_146388614_146390758_146390897_146391562_146392124_146392421_146392628_146392797_146393429_146552609
103561	chr19	-	3073	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	5	1	145	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCCCGAGAGCGCTCTTGA	NA	False	NA	NA	False	NA	NA	NA	22705213	22699883	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700763_22700850_22702894
103562	chr4	+	5173	1	Intergenic	novelGene_1875	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	118	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820662	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66820700_66825800
103563	chr15	-	2495	5	NIC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-106	-185	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1726.84068460295	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACACCCTACCGAGTA	652	False	NA	NA	False	NA	NA	NA	36793869	36771198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr15_-_36773022_36775482_36775579_36776489_36776614_36790927_36791233_36793722
103564	chr13	-	5683	8	Antisense	novelGene_ENSMUSG00000113690.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	352	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAACAAGGCACACGGAAGA	NA	False	NA	NA	False	NA	NA	NA	62324398	61952105	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_61952219_62194993_62195121_62195306_62195370_62196732_62197302_62197972_62198385_62319361_62320949_62321029_62321982_62322538
103565	chr5	-	1248	5	NNC	ENSMUSG00000029580.15	novel	894	5	NA	NA	5	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	1763.58576485523	1	66	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTTGTGGCTCTGTGGC	8926	False	NA	NA	False	NA	NA	NA	142892472	142888872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889635_142890486_142890538_142890991_142891232_142891318_142891448_142892406
103566	chr1	+	6531	42	Antisense	novelGene_ENSMUSG00000104503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	152	16	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAGCAAGAGGCAGAGAG	NA	False	NA	NA	False	NA	NA	NA	84701888	84827720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84702535_84703115_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708416_84709341_84709501_84709735_84709847_84714700_84714802_84716397_84716556_84717234_84717380_84719909_84720060_84720814_84720939_84721534_84721740_84722397_84722472_84722732_84722907_84724898_84725051_84726878_84727068_84728075_84728221_84729259_84729437_84729601_84729702_84731991_84732198_84735135_84735257_84735442_84735670_84736692_84736808_84738475_84738647_84738735_84738852_84739585_84739751_84739839_84739927_84741081_84741209_84741561_84741649_84743695_84743794_84743878_84743916_84746303_84746464_84754040_84754132_84755143_84755223_84760546_84760687_84763814_84763940_84771386_84772049_84792543_84792691_84822070_84822111_84827642
103567	chr2	+	1674	1	FSM	ENSMUSG00000064193.9	ENSMUST00000138679.2	1302	1	-45	-327	-45	327	mono-exon	FALSE	NA	NA	NA	NA	NA	3	63	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATTTTCTAAATTAGA	NA	False	NA	NA	False	NA	NA	NA	80667439	80669113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_80667400_80669100
103568	chr14	-	2089	1	Antisense	novelGene_ENSMUSG00000058126.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	124	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTCCTCTTCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	113554136	113552047	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_113552000_113554100
103569	chr19	+	4859	7	NNC	ENSMUSG00000025203.7	novel	5455	6	NA	NA	47	-81	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1009.02038576477	1	179	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATACCAACTCCGAAAG	1516	False	NA	NA	False	NA	NA	NA	44282561	44295222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439_44294745_44294810
103570	chr13	-	2084	7	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	-95	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2552.78380183064	2	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	NA	False	NA	NA	False	NA	NA	NA	58543107	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978
103571	chr11	+	1802	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	216	4	-59	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	3	37	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5347	False	NA	NA	False	NA	NA	NA	52251902	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103573	chr4	+	2049	5	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	0	multi-exon	FALSE	non_canonical	0	0	junction_1	43.7342828911141	1	66	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447340_147665698_147665826_147667290_147667431_147668090
103574	chr5	+	2903	15	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	108	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAAGTCCAAGTTCGAAGA	NA	False	NA	NA	False	NA	NA	NA	31315744	31337244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315840_31316404_31316534_31316777_31317206_31317291_31317436_31323228_31323733_31325041_31325156_31325341_31325438_31325583_31325821_31326392_31326496_31327181_31327262_31327525_31327609_31330120_31330408_31331111_31331436_31331577_31331839_31337226
103575	chr9	+	1262	9	ISM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	200	3781	-5	112	5prime_fragment	FALSE	canonical	3	15664	junction_5	1373.52301923739	1	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCACTTGCAGCTATTCGA	1864	False	NA	NA	False	NA	NA	NA	59563850	59582877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850
103576	chr18	-	1859	13	NIC	ENSMUSG00000024587.11	novel	2687	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	1529.02687599009	1	54	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGGTCTGACATC	NA	False	NA	NA	False	NA	NA	NA	64649570	64633288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64648396_64648477_64649486
103577	chr4	-	1020	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	54	-72	-54	mono-exon	FALSE	NA	NA	NA	NA	NA	7	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTACAGCAACAGGGTGGT	NA	False	NA	NA	False	NA	NA	NA	91740978	91739958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91740000_91741000
103578	chr1	+	1007	5	Antisense	novelGene_ENSMUSG00000102275.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	8057	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGACTCCGCGTTGCTTTA	1004	False	NA	NA	False	NA	NA	NA	4846602	4855935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_4847029_4847751_4847874_4852792_4852957_4854173_4854328_4855794
103579	chr6	-	2301	11	NNC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	215	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1230.39642392198	2	98	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8700	False	NA	NA	False	NA	NA	NA	145021695	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985317_144993017_144993090_145021614
103580	chrX	-	2757	2	Antisense	novelGene_ENSMUSG00000079450.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	87	junction_1	0	2	54	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCACCCGCTTCCTGGGTT	NA	False	NA	NA	False	NA	NA	NA	122062800	122059193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_122059689_122060538
103581	chr17	-	1737	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	8	904	8	780	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	1	94	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATATTTGTTTGTGGAA	NA	False	NA	NA	False	NA	NA	NA	36149190	36145716	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
103582	chr1	-	4437	3	Intergenic	novelGene_465	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	215	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCACCCCAGTTGCCTGGA	NA	False	NA	NA	False	NA	NA	NA	149396849	149382041	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_-_149385239_149393238_149393464_149395834
103583	chr1	+	918	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	0	-50	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11351.8922651688	1	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACCGGAATTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	86454447	86458384	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86454502_86457177_86457275_86457457_86457527_86457686
103584	chr9	+	2016	8	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-426	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	8330.47986711009	1	70	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATACAGTTGTCCTG	3099	False	NA	NA	False	NA	NA	NA	40713211	40716489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715043_40715239_40715460_40715660_40715758_40715992_40716227
103585	chr11	+	1529	7	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-36	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1251.59676902037	1	57	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5370	False	NA	NA	False	NA	NA	NA	52251925	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265751_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103586	chr5	-	3164	19	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	0	21	intron_retention	FALSE	non_canonical	0	0	junction_17	176.488589495815	1	82	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAACTCCTTAAATCCCT	NA	False	NA	NA	False	NA	NA	NA	31337255	31314766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31331308_31331571_31331840_31337227
103587	chr14	+	2027	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	20	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	768.587153820405	5	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271107	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281768_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292935_30293004_30293108_30293203_30294164_30294288_30295293
103588	chr1	-	1092	5	Antisense	novelGene_ENSMUSG00000026238.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	53	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCGGTGGGCGGCGAAG	9075	False	NA	NA	False	NA	NA	NA	86458404	86454533	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_86454667_86456892_86456965_86457177_86457274_86457451_86457531_86457692
103589	chrX	-	2232	12	FSM	ENSMUSG00000031297.15	ENSMUST00000073927.5	2232	12	6	-6	6	5	multi-exon	FALSE	canonical	3	1250	junction_11	82.5987012884915	2	78	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAAAAACCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	100128972	100122821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
103590	chr4	-	2629	6	Antisense	novelGene_ENSMUSG00000095096.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	66	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCACTAGTCTCCCTCCA	NA	False	NA	NA	False	NA	NA	NA	146393362	146033928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146034019_146094930_146095020_146312911_146312969_146316360_146316491_146317965_146318524_146391657
103591	chr18	+	1613	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	-1	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	81	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48180976_48181094
103592	chr3	+	2164	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	63	3	-51	2	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	1	128	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGACCGGCTTGACTTTG	NA	False	NA	NA	False	NA	NA	NA	89986909	90008205	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
103593	chr6	-	2161	10	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	131	-63	combination_of_known_splicesites	FALSE	canonical	3	19	junction_8	1266.44691076167	2	80	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGGAAGTGACAGATACT	8616	False	NA	NA	False	NA	NA	NA	145021779	144944946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144993017_144993090_145021614
103594	chr7	+	1150	7	Antisense	novelGene_ENSMUSG00000030695.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	30	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAATGCTTCCTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	126394411	126396708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505
103595	chr4	+	2505	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	0	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	39.7254247931976	3	42	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206900	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146207708_146207846_146291416_146291431_146312913_146312972_146388486_146388614_146390758_146390897_146391562_146392337_146392757_146393429_146552609
103596	chr4	+	2818	11	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	7	-1901	multi-exon	TRUE	non_canonical	0	0	junction_2	76.7317404989617	1	69	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206907	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146209452_146209546_146365127_146365259_146368115_146368213_146371787_146371878_146384373_146384431_146388486_146388614_146390758_146390897_146391646_146392589_146392839_146393401_146552581
103597	chr15	-	2619	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	226	-723	-92	-211	multi-exon	FALSE	canonical	3	2654	junction_5	629.488808478753	2	117	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGATGGGGCTAAGTCAC	666	False	NA	NA	False	NA	NA	NA	36793855	36771224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
103598	chr13	-	2604	14	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	2913.27242950616	2	80	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	5148	False	NA	NA	False	NA	NA	NA	58549933	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540231_58541009_58541180_58541505_58541589_58541873_58542010_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
103599	chr5	-	2087	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-70	-76	-70	76	mono-exon	FALSE	NA	NA	NA	NA	NA	10	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTGGCACCAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833625	5831538	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
103600	chr13	-	2521	14	NNC	ENSMUSG00000021546.19	novel	2754	16	NA	NA	-2	-80	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	2494.09319471132	1	99	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTATGCACAATGAAAGAAAA	4758	False	NA	NA	False	NA	NA	NA	58550323	58539230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58546969_58547027_58547706_58547805_58548146_58548232_58550206
103601	chr9	+	1049	3	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	-61	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	42	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	81559589	81560726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_81559740_81559779_81559965_81560012
103602	chr10	-	3866	18	FSM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	414	-2	414	2	multi-exon	FALSE	canonical	3	414	junction_15	35.8424078528779	736	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTGGTTCAGACAAGGGCT	NA	False	NA	NA	False	NA	NA	NA	62175907	62104631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
103603	chr11	+	1734	5	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-22	-276	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	4382.02786960558	2	64	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGCCAAATATATCATGCC	3061	False	NA	NA	False	NA	NA	NA	75623764	75656395	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642994_75647642_75647850_75650117_75650255_75655445
103604	chr9	+	688	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	581	2	0	-2	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	1	39	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATCTCATGTGTGGACT	NA	False	NA	NA	False	NA	NA	NA	120401160	120403496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
103605	chr6	+	1611	8	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	-5	-16	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	2279.64294554732	1	54	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAACAGTGTGTACCAGTT	5861	False	NA	NA	False	NA	NA	NA	67243983	67261274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249927_67254744_67254923_67258631_67258806_67260886
103606	chr14	+	2102	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	1	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.023770523273	2	84	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAATCCTCAGACTCT	NA	False	NA	NA	False	NA	NA	NA	30271088	30295573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271322_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
103607	chr4	+	1999	6	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	13	-44	multi-exon	FALSE	non_canonical	0	0	junction_1	40.4	1	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTCCTGTAACTAACTC	NA	False	NA	NA	False	NA	NA	NA	147216507	147669611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147534439_147534552_147665698_147665826_147667290_147667375_147667904_147668423_147668592
103608	chr8	-	1091	4	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	4	-542	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3550.14744607726	1	60	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCATTGAGTATTCATT	NA	False	NA	NA	False	NA	NA	NA	46664063	46660375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660658_46661434_46661570_46662058_46662554_46663884
103609	chr7	-	1154	5	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	8222	327	-96	110	3prime_fragment	FALSE	canonical	3	5282	junction_4	576.908300772315	1	13	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAATTGATGGTTGTTGC	NA	False	NA	NA	False	NA	NA	NA	110674002	110671465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886
103610	chr2	-	1340	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11337	110	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	11426178	11413731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414736_11425842
103611	chrX	-	3776	27	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	400	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_25	194.59657859882	1	91	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATACTCTGGTGTTCGTG	NA	False	NA	NA	False	NA	NA	NA	59224049	59101319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59111797_59111992_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59198259_59198351_59200962_59201070_59205582_59205656_59223941
103612	chr15	+	1828	2	Genic_Genomic	ENSMUSG00000043091.10	novel	1982	4	NA	NA	-80048	-144	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	32	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGATAGTGCTGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	98847723	98935847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr15_+_98848743_98935038
103613	chr9	+	2966	14	NNC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	20	-1981	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	111.562755974877	1	125	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTCCAAAGCTAATATCAAG	NA	False	NA	NA	False	NA	NA	NA	109760887	109907122	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109807921_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109907070
103614	chr15	-	1250	3	Antisense	novelGene_ENSMUSG00000043091.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	26	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCACTCACGCTGTGGA	1591	False	NA	NA	False	NA	NA	NA	98935809	98931987	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_98932203_98932336_98932476_98934913
103615	chr18	+	1730	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	1	16	1	-16	mono-exon	FALSE	NA	NA	NA	NA	NA	1	70	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CACCAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179714	48181444	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181400
103616	chr1	+	6820	43	Antisense	novelGene_ENSMUSG00000104503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	104	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCGGCGGCGACGGCG	NA	False	NA	NA	False	NA	NA	NA	84701888	84817021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84702535_84703115_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708416_84709341_84709501_84709735_84709847_84714700_84714802_84716397_84716556_84717234_84717380_84719909_84720060_84720814_84720939_84721534_84721740_84722397_84722472_84722732_84722907_84724898_84725051_84726878_84727068_84728075_84728221_84729259_84729437_84729601_84729702_84731991_84732198_84735135_84735257_84735442_84735670_84736692_84736808_84738475_84738647_84738735_84738852_84739585_84739751_84739839_84739927_84741081_84741210_84741558_84741653_84743700_84743797_84743879_84743918_84746304_84746451_84754035_84754134_84755144_84755229_84760547_84760687_84763813_84763916_84771243_84772049_84773197_84773284_84773410_84773539_84792545_84792694_84816953
103617	chr1	+	671	1	FSM	ENSMUSG00000094497.2	ENSMUST00000178557.2	483	1	-53	-135	-53	135	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGAGGCAGATGTGTTA	NA	False	NA	NA	False	NA	NA	NA	43228262	43228933	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_43228300_43228900
103618	chr17	+	2799	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	25	381	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_14	585.627651408085	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAAAATGTTTTTGTTT	445	False	NA	NA	False	NA	NA	NA	56610345	56629720	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627287_56627396_56627543_56629020_56629126_56629355
103619	chr18	+	4160	18	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	182	-3415	intron_retention	FALSE	canonical	3	27	junction_15	161.25103470605	3	66	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTCCTGGGCTTGTCCCC	9243	False	NA	NA	False	NA	NA	NA	32970556	32996038	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32987913_32992272_32992381_32994102_32994178_32994554_32994701_32995977
103621	chr17	+	2928	15	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	43	-31	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	921.348302151554	1	96	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATTGCAATAAAATAAAATT	542	False	NA	NA	False	NA	NA	NA	56610442	56630455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616370_56616488_56616580_56617675_56617837_56619053_56619421_56619803_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625195_56629369_56629470_56629586
103622	chr5	-	2335	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	277	6	277	6	multi-exon	FALSE	canonical	3	916	junction_1	0	1	73	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466801	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
103623	chr4	+	2825	6	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	14	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	95.1924366743493	2	74	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAATTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	146033928	146063190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146057014_146057226_146058453_146058581_146060726_146061381_146061549
103624	chr4	+	2259	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	95	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	35.3426377173001	2	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216589	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216770_147545655_147545711_147575087_147575217_147578832_147578899_147665698_147665826_147667290_147667436_147667927_147668424_147668589
103625	chr6	-	3194	7	NNC	ENSMUSG00000003153.11	novel	6253	9	NA	NA	-4044	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4456.25652874697	1	113	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAATGTATGTGTCATGT	NA	False	NA	NA	False	NA	NA	NA	122714179	122704792	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122707100_122708367_122708568_122709349_122709432_122709728_122709834_122712395_122712570_122713537_122713701_122714016
103626	chr2	+	4726	5	NIC	ENSMUSG00000078875.11	novel	683	5	NA	NA	-53	2781	combination_of_known_junctions	FALSE	canonical	3	46	junction_2	44.7178655572915	2	197	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAACTTGCTTCTTGGTC	NA	False	NA	NA	False	NA	NA	NA	176692695	176707361	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806_176701868_176703022
103627	chr5	+	2254	14	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4921	27	intron_retention	FALSE	non_canonical	0	0	junction_3	634.447893981464	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGCTCTGTGACTAGA	NA	False	NA	NA	False	NA	NA	NA	108208618	108255363	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235238_108239938_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
103628	chr11	-	775	4	NNC	ENSMUSG00000020857.12	novel	734	4	NA	NA	-47	-5	intron_retention	FALSE	non_canonical	0	0	junction_2	3206.54646344353	1	25	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTGAGTGTGCAGTGTTC	NA	False	NA	NA	False	NA	NA	NA	93846656	93840647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_93840873_93842725_93842834_93843621_93843728_93846320
103629	SIRV5	+	1825	14	NNC	SIRV5A	novel	2085	17	NA	NA	-1	1	intron_retention	FALSE	non_canonical	0	0	junction_1	3554.31758278434	21	29	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTACCGCCAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	1026	10990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1095_3353_3405_3483_3641_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
103631	chr3	+	4208	24	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	6	-4	intron_retention	FALSE	non_canonical	0	0	junction_20	144.095024832485	2	101	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCAGTCGTGGTGTCTGTT	NA	False	NA	NA	False	NA	NA	NA	54600539	54636179	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608907_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625831_54629956_54630062_54633390_54633497_54634989_54635118_54635764
103632	chr4	+	3721	10	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-2	-6	multi-exon	TRUE	non_canonical	0	0	junction_1	234.573897909053	1	153	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	147056430	147145245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056659_147060243_147060315_147061946_147062040_147107818_147107913_147136965_147137048_147140055_147140183_147141715_147142369_147142449_147142927_147143013_147143583_147143918
103633	chr1	-	2949	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	29	53	-23	-15	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	2	102	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTACATGTGGACTTCA	NA	False	NA	NA	False	NA	NA	NA	20890507	20873244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
103634	chr2	+	1264	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11374	209	multi-exon	FALSE	non_canonical	0	0	junction_1	0	113	40	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCAACCCCCCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	11413660	11426240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414259_11425574
103635	chr1	+	2352	8	NNC	ENSMUSG00000051223.15	novel	1615	10	NA	NA	38	-800	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	630.726273951753	2	86	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTTATAGATCAGTCTTT	929	False	NA	NA	False	NA	NA	NA	58432328	58445712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_58432336_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
103636	chr7	-	1946	9	NNC	ENSMUSG00000007891.17	novel	2127	9	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	705.961124549362	1	107	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCTATTGGTGTGCTCTG	8860	False	NA	NA	False	NA	NA	NA	141941599	141929653	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_141930467_141930559_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
103637	chr3	+	2265	17	NNC	ENSMUSG00000027680.16	novel	3014	16	NA	NA	-3	-357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_16	337.05227246675	326	53	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTGCTGATTTTT	4853	False	NA	NA	False	NA	NA	NA	34074250	34124114	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065_34123650_34124047
103638	chr8	-	2964	6	Antisense	novelGene_ENSMUSG00000071793.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	78	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCCAAACCGCTCGGGC	NA	False	NA	NA	False	NA	NA	NA	20045109	20016570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_-_20016683_20030544_20030754_20035856_20036160_20039782_20039903_20041811_20042319_20043396
103639	chr17	-	673	3	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	766	-18	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	5465	63	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGCAGTTTTATACAG	NA	False	NA	-83	True	NA	NA	NA	45879896	45878718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878945_45879154_45879489_45879783
103640	chr11	-	2563	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	293	5	-119	2	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	1	105	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATTGTCACTGCTGCTTT	3660	False	NA	NA	False	NA	NA	NA	120463786	120451128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
103641	chr5	-	1315	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-9	intron_retention	TRUE	non_canonical	0	0	junction_1	2032.30564630422	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAAACAGCTTGTGGCTC	8921	False	NA	NA	False	NA	NA	NA	142892477	142888878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889256_142889415_142889697_142889821_142890035_142890987_142891232_142891318_142891448_142892406
103642	chr17	+	2885	16	NNC	ENSMUSG00000001228.15	novel	3402	17	NA	NA	-6	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	948.636481131383	1	90	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATTCTGGCCGGGCAG	1441	False	NA	NA	False	NA	NA	NA	56611341	56630467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617841_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627353_56629509_56629951_56630088
103643	chr4	+	2276	7	Genic_Genomic	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-42382	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	97	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147534491	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_147534577_147536170_147536264_147545579_147545672_147595254_147595333_147596813_147597077_147599008_147599202_147668174
103645	chr8	+	3406	22	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1160.95782646483	1	80	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760533	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760652_111760838_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769959_111770328_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779947_111780520_111780641_111780756_111780844_111781140_111781255_111781650
103646	chr1	-	2868	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	21	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	858.429852987418	2	100	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGGACTTCATGCTTTG	NA	False	NA	NA	False	NA	NA	NA	20890463	20873237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875068_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879931_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
103648	chr11	+	1063	1	NIC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	462	-13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTAAGCATATATGGTG	NA	False	NA	NA	False	NA	NA	NA	62442963	62444026	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_62443000_62444000
103649	chr16	+	2242	21	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	79	-16478	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	179.634183829248	1	53	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAAGGTCTCACTGAAACA	NA	False	NA	NA	False	NA	NA	NA	48251678	48432669	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269572_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300198_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335108_48378738_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651
103650	chr7	+	3018	28	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-3	-23	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	352.624204932075	1	142	15	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGACTTCTTAGATG	2626	False	NA	NA	False	NA	NA	NA	13012757	13045327	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020578_13022600_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
103651	chr1	-	3985	27	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-21352	-379	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	285.679994349618	1	80	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTGTGCAAATGTGAAGCA	NA	False	NA	NA	False	NA	NA	NA	84792624	84722827	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84722907_84724898_84725051_84726878_84727071_84728078_84728223_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771877_84771923_84772049_84773410_84773537_84792543
103652	chr11	-	352	1	Intergenic	novelGene_2511	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	8	13	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGAGCTCTCGCTGGCCCT	NA	False	NA	NA	False	NA	NA	NA	108902944	108902592	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_108902600_108902900
103653	chr10	+	3056	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1963.88304524089	3	100	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2196	False	NA	NA	False	NA	NA	NA	81012479	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014053_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
103654	chr11	+	1800	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-25	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1589.8383876248	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5381	False	NA	NA	False	NA	NA	NA	52251936	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274671_52274745_52274796_52274911_52276336_52276561_52278242_52278301_52279258
103655	chr10	+	2939	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	18	132	18	-132	multi-exon	FALSE	canonical	3	5618	junction_10	706.418033369635	2	68	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCCAAGTGGAGTTCCCCC	2199	False	NA	NA	False	NA	NA	NA	81012482	81018200	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
103656	chr8	+	3151	20	ISM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	3146	2098	3132	-2098	3prime_fragment	FALSE	canonical	2	2613	junction_18	264.272838112412	3	63	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111763679	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr8_+_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
103657	chr17	-	2579	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	83	10	30	-10	multi-exon	FALSE	canonical	3	1697	junction_3	70.6872513258225	1	78	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTGTATCTGGTGCCA	4856	False	NA	NA	False	NA	NA	NA	25179580	25161453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
103658	chr11	+	4411	25	NIC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-5	-251	intron_retention	FALSE	canonical	3	2354	junction_11	203.226406311341	1	140	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCAATATTTTAATAAACA	NA	False	NA	NA	False	NA	NA	NA	72332197	72342343	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
103659	chr4	+	4222	7	Genic_Genomic	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	3993	5	NA	NA	-143836	-1030	multi-exon	TRUE	non_canonical	0	0	junction_1	0	5	189	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTACTAATAAAGGCAGAC	NA	False	NA	NA	False	NA	NA	NA	146912596	147144221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146913270_146976154_146976500_147073954_147075046_147075130_147075354_147142082_147143289_147143372_147143981_147144145
103660	chr8	-	1794	1	FSM	ENSMUSG00000101431.2	ENSMUST00000120430.2	1597	1	-46	-151	-46	151	mono-exon	FALSE	NA	NA	NA	NA	NA	541	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGTGACAGCATATGCT	NA	False	NA	NA	False	NA	NA	NA	76439870	76438076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_76438100_76439900
103661	chr5	-	5139	21	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	197	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGCACCGAGCGCGGCAA	NA	False	NA	NA	False	NA	NA	NA	75817381	75735659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75735776_75767682_75767957_75769927_75770210_75771464_75771602_75775976_75776164_75781529_75781695_75783646_75783765_75797953_75798067_75799622_75799805_75801150_75801259_75801356_75801485_75801768_75801875_75801986_75802095_75806493_75806644_75808404_75808492_75809041_75809173_75810204_75810334_75813213_75813314_75813412_75813517_75813879_75813986_75815073
103662	chr1	-	3249	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	0	0	intron_retention	TRUE	canonical	0	0	junction_1	643.456146524377	1	95	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	20890484	20873191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873372_20873456_20873879_20875040_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
103663	chr2	+	2510	14	Intergenic	novelGene_2773	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	76	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGGGAGGGAGAAAGAAGC	NA	False	NA	NA	False	NA	NA	NA	165654076	165720877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_165654784_165657240_165657390_165662461_165662609_165670129_165670611_165675230_165675343_165676822_165676890_165679202_165679256_165680730_165680820_165681917_165681972_165684667_165684798_165687940_165688090_165693926_165694069_165717624_165717696_165720718
103664	chr4	+	3483	6	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	2	2153	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	224.705140128124	2	92	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGACTTGGCTGTTTTC	2371	False	NA	NA	False	NA	NA	NA	147445761	147477614	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147445898_147447255_147447362_147469673_147469759_147472778_147472906_147474017_147474089_147474656
103665	chr11	-	2603	2	Intergenic	novelGene_2346	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	107	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTACCCAGCTACTCGGG	NA	False	NA	NA	False	NA	NA	NA	57450923	57445738	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446922_57449503
103666	chr4	+	2521	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6_ENSMUSG00000065999.14	novel	2813	7	NA	NA	15	0	multi-exon	FALSE	non_canonical	0	0	junction_1	41.6443273447897	1	58	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216509	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216737_147390145_147390233_147534439_147534577_147578832_147578929_147661528_147661587_147665698_147665826_147667290_147667431_147667838_147668409_147668576
103667	chr4	+	2679	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10	novel	2813	7	NA	NA	-13	1969	multi-exon	TRUE	non_canonical	0	0	junction_1	13.6096371083957	1	136	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTTTTTTTGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	147216481	147599912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147316807_147316901_147393100_147393194_147592042_147592098_147596801_147597860_147598027_147598384_147599053
103668	chr2	+	1742	11	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	150	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	736.991478919533	1	60	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTTGGTGGGAGGGGCA	NA	False	NA	NA	False	NA	NA	NA	130116561	130121149	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119895_130120075_130120211_130120816
103670	chr10	-	2998	14	Antisense	novelGene_ENSMUSG00000064441.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	100	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAAGCGCGCCGACGATGG	7894	False	NA	NA	False	NA	NA	NA	81018300	81012519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81012562_81013496_81013714_81013886_81014066_81014511_81014726_81014913_81015092_81015177_81015284_81015375_81015638_81015721_81015910_81015984_81016244_81016396_81016500_81016635_81016990_81017059_81017243_81017324_81017459_81017721
103671	chr13	+	2133	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	69	2101	2	-50	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	1	56	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCCAGATGATTTCTGT	NA	False	NA	NA	False	NA	NA	NA	3588131	3615770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
103672	chr11	-	1707	8	Antisense	novelGene_ENSMUSG00000020402.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16662	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCCATGTTCTGCCACAA	-6	True	NA	NA	False	NA	NA	NA	52280220	52265136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_52265195_52265743_52265794_52267216_52267368_52267471_52267529_52274679_52274900_52276407_52276557_52278240_52278299_52279256
103673	chr8	-	1167	5	NNC	ENSMUSG00000031633.5	novel	1925	4	NA	NA	19	-376	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3341.33329488395	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATCTCCCTGCCCTTAT	NA	False	NA	NA	False	NA	NA	NA	46664048	46660209	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_46660395_46660503_46660658_46661434_46661576_46662058_46662546_46663848
103674	chr1	+	4458	28	Antisense	novelGene_ENSMUSG00000104503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	86	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGCGCCGCCGTGCGCCTCCG	NA	False	NA	NA	False	NA	NA	NA	84720872	84817082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84720939_84721534_84721740_84722397_84722472_84722732_84722907_84724898_84725051_84726878_84727068_84728075_84728221_84729259_84729435_84729600_84729702_84731991_84732198_84735135_84735257_84735442_84735670_84736692_84736848_84738482_84738647_84738735_84738852_84739586_84739751_84739839_84739906_84741047_84741216_84741561_84741647_84743698_84743797_84743879_84743916_84746303_84746460_84754040_84754134_84760547_84760687_84763813_84763916_84771243_84772051_84792548_84792694_84816953
103675	chrM	-	825	1	Antisense	novelGene_ENSMUSG00000064339.1_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGTGTTCATTGGTCAT	-7	True	NA	NA	False	NA	NA	NA	1918	1093	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrM_-_1100_1900
103676	chr11	+	1191	4	Antisense	novelGene_ENSMUSG00000025132.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	58	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGACGGTCACTTCCGGG	1124	False	NA	NA	False	NA	NA	NA	120468937	120472415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_120469788_120470813_120470884_120471013_120471222_120472352
103677	chr1	-	2997	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	-21	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	646.520772578113	2	92	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTGTGTGTATGTG	NA	False	NA	NA	False	NA	NA	NA	20890505	20873193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882946_20883211_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
103678	chr13	+	2647	6	Intergenic	novelGene_1457	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	136	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCCACAGTGATCTTTTA	5573	False	NA	NA	False	NA	NA	NA	66938977	66950617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_66940570_66940654_66940863_66941030_66941595_66942700_66942758_66942956_66943110_66950544
103679	chr4	+	2375	7	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	0	-1876	multi-exon	TRUE	non_canonical	0	0	junction_1	45.0940375462458	1	36	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206900	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146368115_146368196_146388486_146388614_146390758_146390904_146391317_146392124_146392797_146393429_146552609
103680	chrX	+	3352	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	27	333	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	1080.69098191851	1	64	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCCCTCCTCAGATCCT	NA	False	NA	NA	False	NA	NA	NA	20529163	20548777	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539183_20541824_20541976_20542117_20542315_20544437_20544503_20544827_20545024_20545637_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
103681	chr1	-	2863	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	164	4	112	1	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	1	96	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTCTGTGTGTATG	NA	False	NA	NA	False	NA	NA	NA	20890372	20873195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
103682	chr15	-	2143	7	NNC	ENSMUSG00000022285.18	novel	3288	7	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1556.05845541441	1	80	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	697	False	NA	NA	False	NA	NA	NA	36793824	36771013	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36771234_36771889_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
103683	chr11	+	1692	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-73	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1053.90480278502	18	30	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCTCATCCTCTTGTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279849_52279966
103684	chr12	-	1503	8	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	3471.56963264252	17	60	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636264_111636449_111636595_111636720_111637306_111637479_111637568_111637782_111637858_111638014_111638199_111638408_111638663
103685	chr15	+	1949	4	NNC	ENSMUSG00000043091.10	novel	1982	4	NA	NA	29	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5549.42071050864	5	78	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCATCTGGTTCATAGCT	NA	False	NA	NA	False	NA	NA	NA	98927800	98935994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_98928306_98931974_98932191_98932329_98932479_98934915
103686	chr13	-	5049	2	Intergenic	novelGene_1556	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	204	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCAAATTTTATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	113860378	113855144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_113857212_113857396
103687	chr2	-	3906	18	NNC	ENSMUSG00000027184.15	novel	4069	18	NA	NA	18	5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	452.382971542007	1	105	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTGGTTATGGTAC	NA	False	NA	NA	False	NA	NA	NA	103627300	103595357	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602060_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
103688	chr3	-	3836	26	NNC	ENSMUSG00000042520.17	novel	4073	28	NA	NA	399	-119	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	319.777797853447	1	188	15	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGGATTAGTTGAAGTG	8122	False	NA	NA	False	NA	NA	NA	89955207	89907718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933893_89933986_89938583_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076
103689	chr14	-	2122	8	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-535	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1.38505138783324	2	110	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGTATGCTTCTGCGTT	NA	False	NA	NA	False	NA	NA	NA	19137681	19114971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19122451_19122587_19132241_19132393_19135569_19135684_19137582
103690	chr4	+	1729	11	NNC	ENSMUSG00000063524.14	novel	2027	12	NA	NA	-33	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5892.18065659905	4	81	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGCAGAAGTCCACCAGT	NA	False	NA	NA	False	NA	NA	NA	150321663	150333315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_150321798_150323929_150324024_150325501_150325635_150328455_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332523_150332577_150332942
103691	chr15	+	2386	7	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCGGTCTCTGGGCGGCG	78	False	NA	NA	False	NA	NA	NA	36771195	36793758	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36771357_36771519_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790930_36791235_36793724
103692	chr13	+	3479	6	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	3	3187	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	17.5042851896329	1	188	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCAATATTGGCTAATAT	NA	False	NA	NA	False	NA	NA	NA	61803119	61894771	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61803248_61803432_61803494_61804858_61805432_61891799_61892816_61892983_61893355_61893441
103693	chr1	-	3043	23	NNC	ENSMUSG00000026219.15	novel	6442	41	NA	NA	7898	1578	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	268.069595163718	2	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTCCAACAAAAACTTCCC	NA	False	NA	NA	False	NA	NA	NA	84754121	84720870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732203_84735137_84735257_84735442_84735672_84736694_84736768_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037
103694	chr10	+	2631	11	NNC	ENSMUSG00000006498.17	novel	3110	14	NA	NA	60	-2	intron_retention	FALSE	non_canonical	0	0	junction_6	516.407445724788	1	103	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTCTTCCCTGAGCCC	291	False	NA	NA	False	NA	NA	NA	79694887	79700191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696874_79697820_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
103695	chr4	-	2350	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	-46	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	444.152774954745	2	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAGGCCAGAGCTGAGT	NA	False	NA	NA	False	NA	NA	NA	137523587	137469053	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469519_137469572_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
103696	chr4	+	2859	14	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6_ENSMUSG00000067919.9	novel	3993	5	NA	NA	-46083	182330	multi-exon	FALSE	non_canonical	0	0	junction_1	199.413607816138	1	63	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147060223	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147060315_147106370_147106458_147107818_147107913_147115003_147115080_147136962_147137048_147140055_147140183_147219028_147219122_147316807_147316901_147337800_147337859_147413438_147413566_147415724_147415863_147416528_147417258_147417341_147418091_147600209
103697	chr5	+	3621	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-216	intron_retention	FALSE	non_canonical	0	0	junction_3	609.08056026185	2	97	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108208601	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255464_108255590
103698	chr4	+	2406	10	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	16	182298	multi-exon	TRUE	non_canonical	0	0	junction_1	58.4541605780879	2	67	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAACTAACTCCAATAAAGC	NA	False	NA	NA	False	NA	NA	NA	147216510	147600489	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147219028_147219122_147390101_147390205_147413438_147413566_147415724_147415863_147416528_147416679_147416764_147417302_147417385_147418058_147600176
103700	chr11	+	997	8	ISM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	3422	4174	1005	3031	internal_fragment	FALSE	canonical	3	2354	junction_4	55.8079798258717	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTCACTGATGACGCTGA	NA	False	NA	NA	False	NA	NA	NA	72335602	72338420	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378
103701	chr2	+	4670	25	Fusion	ENSMUSG00000017861.12_ENSMUSG00000017858.13	novel	2248	13	NA	NA	-19	-6	multi-exon	FALSE	canonical	0	0	junction_17	1404.10439463797	1	130	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTAGTGTCTGACTCCTC	NA	False	NA	NA	False	NA	NA	NA	162859391	162926602	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_+_162859454_162864294_162864420_162865269_162865358_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122_162887297_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914548_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924512_162924620_162925085
103702	chr1	-	2405	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	29	2	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	44	43	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGTGTTACCCTTTCCA	4265	False	NA	NA	False	NA	NA	NA	55127373	55116991	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
103703	chr5	+	1470	4	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	24	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCTCTCTTGCTCTGGG	NA	False	NA	NA	False	NA	NA	NA	142889018	142891162	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993
103704	chr5	-	2886	20	Antisense	novelGene_ENSMUSG00000005672.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	113	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCCCTGGACTTGCAGAT	NA	False	NA	NA	False	NA	NA	NA	75815275	75767718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_75767960_75769927_75770210_75771464_75771602_75775976_75776154_75781507_75781710_75783658_75783765_75797953_75798072_75799630_75799814_75801171_75801259_75801358_75801485_75801768_75801875_75801986_75802117_75806514_75806644_75808404_75808492_75809041_75809173_75810204_75810331_75813213_75813317_75813412_75813519_75813878_75813986_75815073
103705	chr7	+	1527	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	4	57	0	-56	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	2	73	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGATGATGGAACCAACC	NA	False	NA	NA	False	NA	NA	NA	46495266	46504994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
103706	chr5	-	1579	4	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1275	112	342	7	3prime_fragment	FALSE	canonical	3	4052	junction_3	93.09970760188	3	49	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGAAGGCTTTGGTCTC	4003	False	NA	NA	False	NA	NA	NA	142891234	142888981	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991
103707	chr4	+	2460	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	117.925434759704	11	50	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147395087_147395147_147534439_147534569_147578832_147578938_147595266_147595337_147596801_147597092_147667904_147668493_147668576
103708	chr14	+	1966	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	766.249669633219	1	29	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271135	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287562_30288928_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293199_30294164_30294288_30295293
103709	chr8	+	2443	19	NNC	ENSMUSG00000074136.10	novel	2803	4	NA	NA	-50604	-2771	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	91	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAATGGCGCCCGAGGT	NA	False	NA	NA	False	NA	NA	NA	96482767	96534058	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_96482928_96483977_96484120_96486725_96486878_96487129_96487253_96487949_96488070_96489616_96489858_96491083_96491213_96491607_96491779_96496128_96496242_96496373_96496499_96497169_96497339_96498598_96498804_96500061_96500117_96500201_96500268_96501257_96501357_96501906_96502015_96515257_96515323_96515430_96515535_96533962
103710	chr5	-	3159	13	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23742	45618	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	75	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCGACCCCAATGACTATT	NA	False	NA	NA	False	NA	NA	NA	108256654	108208613	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228888_108229000_108229082_108234861_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241272_108241989_108242113_108246982_108247047_108248673_108248857_108251888_108251942_108254825
103711	chr11	+	2564	10	NNC	ENSMUSG00000010554.15	novel	12584	10	NA	NA	-6	690	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	128.522179476089	1	132	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACCAACCCACCGACAG	8574	False	NA	NA	False	NA	NA	NA	74661735	74709410	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_74661811_74664346_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74694656_74694727_74696078_74696169_74707695_74707870_74707984
103712	chr5	+	2552	16	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	56	intron_retention	FALSE	canonical	0	0	junction_2	640.765320187942	2	94	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCAGCATTTCTTCTCAG	NA	False	NA	NA	False	NA	NA	NA	108208601	108255546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228894_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453_108255190_108255285
103713	chr1	+	2811	18	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCGTGACACCGCCTTGGC	NA	False	NA	NA	False	NA	NA	NA	20873245	20890472	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873517_20873622_20873878_20875039_20875133_20875485_20875564_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882395_20882787_20882915_20883178_20883339_20884619_20884731_20884911_20885151_20886871_20887003_20887465_20887676_20888016_20888129_20890353
103714	chr5	+	2505	3	Antisense	novelGene_ENSMUSG00000051391.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	117	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCAATGCGTGCCGCGG	3075	False	NA	NA	False	NA	NA	NA	135938179	135963453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135939369_135939429_135940446_135963153
103715	chr13	-	2430	13	NNC	ENSMUSG00000021546.19	novel	2626	15	NA	NA	847	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3354.99743748867	1	77	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGACGTGTGCCCAATT	6849	False	NA	NA	False	NA	NA	NA	58548232	58539051	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542169_58542400_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545600_58546965_58547027_58547706_58547805_58548146
103716	chr4	+	2842	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	5	0	multi-exon	FALSE	non_canonical	0	0	junction_1	43.4506522813348	2	117	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216499	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217388_147578832_147578925_147639766_147639926_147661481_147661587_147665698_147665826_147667290_147667431_147667838
103717	chr10	-	1059	8	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	-1348	19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	927.842769051757	1	35	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAACAGTTTGCCAGGGG	NA	False	NA	NA	False	NA	NA	NA	127355997	127353708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355261_127355416_127355839
103718	chr11	+	1568	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-83	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1514.39680185524	4	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5323	False	NA	NA	False	NA	NA	NA	52251878	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267335_52274843_52274903_52276409_52276561_52278242_52278301_52279258
103719	chr4	+	2387	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	19	182326	multi-exon	TRUE	non_canonical	0	0	junction_1	64.2914283174829	1	51	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACAAGGTTGCTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	147216513	147600517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216749_147219028_147219072_147337800_147337859_147413438_147413566_147415724_147415863_147416444_147417287_147417454_147418063_147600181
103720	chr4	+	1963	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	2800	4	NA	NA	2075	182316	multi-exon	TRUE	non_canonical	0	0	junction_1	65.0864417368102	1	47	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAAAGATTCTACAAGGT	6185	False	NA	NA	False	NA	NA	NA	147316815	147600507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147316901_147390101_147390233_147393100_147393144_147413438_147413566_147415724_147415863_147416528_147416952_147417372_147418084_147600202
103721	chr13	+	3941	5	NNC	ENSMUSG00000113295.2	novel	378	3	NA	NA	5	3045	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	2.1650635094611	2	128	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTTCTGTTGTTGTGA	NA	False	NA	NA	False	NA	NA	NA	61803121	61894629	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_61803248_61804858_61805998_61891703_61892757_61892922_61893373_61893456
103722	chr11	-	1753	6	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	26	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAAATGGCGGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	75656396	75623766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642906_75646398_75646507_75647642_75647847_75650114_75650253_75655443
103723	chr10	+	8243	13	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	108	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCATAGGCGAGCACACC	NA	False	NA	NA	False	NA	NA	NA	62647010	62721965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62649190_62649300_62649596_62650207_62650351_62652160_62652252_62654716_62654816_62655253_62655402_62658326_62658536_62668665_62668770_62669320_62669410_62673955_62676160_62700588_62700639_62713928_62715913_62721317
103724	chr12	-	382	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	-12	-22	-12	22	mono-exon	FALSE	NA	NA	NA	NA	NA	3	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTTTTATGTATCTTGA	NA	False	NA	NA	False	NA	NA	NA	75678104	75677722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_75677700_75678100
103725	chr4	+	3801	2	Intergenic	novelGene_2117	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	66	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146802078	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146803004_146803128
103726	chr11	+	1771	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-78	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	1053.90480278502	1506	29	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTCTTGTTGTTTTTGTT	5328	False	NA	NA	False	NA	NA	NA	52251883	52280223	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52280013_52280065
103727	chr4	-	2189	8	Antisense	novelGene_ENSMUSG00000081522.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	34	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCGAGAATGCTGGAATG	NA	False	NA	NA	False	NA	NA	NA	146135201	146033879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146034016_146036302_146036396_146038220_146038238_146058451_146058580_146060725_146060871_146061200_146062041_146062460_146063128_146135038
103728	chr5	-	4378	6	FSM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	49	5981	4	128	multi-exon	FALSE	canonical	3	8	junction_5	11.3384302264467	1	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGTCTCTCTGTGTAT	4822	False	NA	NA	False	NA	NA	NA	5744529	5720809	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5744379
103729	chr4	+	2583	8	NNC	ENSMUSG00000078502.11	novel	2498	5	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.3359538848849	2	61	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	145311761	145351910	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145312083_145312571_145312707_145314001_145314038_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348803_145350150
103732	chr11	-	3273	19	NNC	ENSMUSG00000001440.6	novel	5894	22	NA	NA	6128	895	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	330.25028387573	1	144	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAACTTCAGGTAACTATT	NA	False	NA	NA	False	NA	NA	NA	97072579	97052440	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055653_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060848_97062402_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450
103733	chr5	-	2622	12	NIC	ENSMUSG00000106864.4	novel	4718	18	NA	NA	1117	-957	intron_retention	FALSE	canonical	3	503	junction_11	52.4256261859764	1	53	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACCTACACTGAAACCA	NA	False	NA	NA	False	NA	NA	NA	31330728	31315744	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr5_-_31315840_31316404_31316534_31316777_31317206_31317291_31317437_31323229_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125
103734	chr5	-	1811	5	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1060	8	127	-8	3prime_fragment	FALSE	canonical	3	4052	junction_3	83.3351666465004	1	91	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	9949	False	NA	NA	False	NA	NA	NA	142891449	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
103735	chr13	-	2593	15	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3321.58730880283	1	77	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTTATGACGTGTGCCC	5148	False	NA	NA	False	NA	NA	NA	58549933	58539055	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540291_58541009_58541135_58541523_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542988_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545579_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
103736	chrM	+	743	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	-161	99	-161	-99	mono-exon	FALSE	NA	NA	NA	NA	NA	2	27	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTACTTCTACTCACAAT	-11	True	NA	NA	False	NA	NA	NA	7765	8508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_7800_8500
103737	chr11	+	1673	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-73	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	1053.90480278502	1	41	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATCCTCTTGTTGTTTTTG	5333	False	NA	NA	False	NA	NA	NA	52251888	52280221	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279954_52280097
103738	chr4	+	2280	6	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	-17	182331	multi-exon	TRUE	non_canonical	0	0	junction_1	74.4	1	57	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	147216477	147600522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216659_147413393_147413566_147415724_147415863_147416444_147417258_147417427_147418073_147600191
103741	chr5	+	4469	17	FSM	ENSMUSG00000029267.18	ENSMUST00000131264.8	3732	17	0	-737	0	2	multi-exon	FALSE	canonical	0	0	junction_5	753.559387175291	46	27	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108213581	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_108213832_108217027_108217230_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
103742	chr1	+	949	4	NNC	ENSMUSG00000026238.15	novel	1216	5	NA	NA	2366	-18	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10460.347359858	2	46	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACAATGGTGTCTCAAAGC	NA	False	NA	NA	False	NA	NA	NA	86456894	86458416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_86456967_86457177_86457275_86457476_86457527_86457686
103743	chr7	-	1072	5	Antisense	novelGene_ENSMUSG00000063229.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	29	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCTCCAGCACGCAGAG	NA	False	NA	NA	False	NA	NA	NA	46505031	46495280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_46495331_46500333_46500482_46501299_46501417_46503404_46503529_46504398
103744	SIRV5	+	4340	18	NNC	SIRV5A	novel	1890	17	NA	NA	-2	0	intron_retention	FALSE	canonical	0	0	junction_2	3820.61876544429	1	78	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	1054	13606	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2126_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7699_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
103745	chrX	-	2279	17	Antisense	novelGene_ENSMUSG00000000787.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAACTGCGGCTTTGAAGC	NA	False	NA	NA	False	NA	NA	NA	13157989	13147275	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13147385_13150408_13150475_13151153_13151203_13152274_13152404_13153459_13153623_13153702_13153803_13154023_13154131_13154493_13154596_13154811_13154906_13155021_13155183_13155637_13155799_13156105_13156218_13156414_13156599_13156686_13156807_13157149_13157292_13157399_13157540_13157649
103746	chrX	-	3234	26	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.979795897113271	7	49	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGGGAAATGTGCTCCC	NA	False	NA	NA	False	NA	NA	NA	20548782	20524791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20524863_20534685_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539211_20541835_20541991_20542115_20542309_20544431_20544520_20544851_20545022_20545627_20545705_20545831_20546026_20547058_20547109_20547344_20547438_20547559_20547751_20548138_20548242_20548345_20548449_20548616
103747	chr16	-	564	1	Intergenic	novelGene_3728	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	12	2	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
103748	chr7	+	2994	26	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	14	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	358.87554611592	1	104	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2643	False	NA	-94	True	NA	NA	NA	13012774	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012845_13019048_13019319_13020483_13020611_13022593_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
103749	chr4	+	4002	7	NNC	ENSMUSG00000066007.16	novel	724	2	NA	NA	-8672	670675	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	27.9031061592313	2	140	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	146084721	146806000	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146084805_146084942_146085033_146094927_146095022_146126784_146126867_146388486_146388614_146802050_146802606_146803029
103750	chr11	+	994	3	NNC	ENSMUSG00000019505.8	novel	1499	2	NA	NA	-172	-24	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	17708.5	2	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTTTTGTTGCATGGTAAG	NA	False	NA	NA	False	NA	NA	NA	62442329	62444015	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_62442422_62442965_62443731_62443878
103751	chr4	+	2937	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	1	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	204.063715540024	1	102	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGATTGTTTCCAA	913	False	NA	NA	False	NA	NA	NA	145237347	145265757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160_145263983_145264021
103752	chr13	+	3538	7	Antisense	novelGene_ENSMUSG00000113712.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	4.09945795874961	3	225	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGCCTGCACAGCCACAG	NA	False	NA	NA	False	NA	NA	NA	65908172	65960843	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_65910303_65910386_65911338_65912506_65912552_65912735_65912869_65954289_65954357_65954555_65954684_65960759
103753	chr13	+	3146	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-29	1308	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	91.7234293951115	1	106	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGATCAGGAACCTTGAC	NA	False	NA	NA	False	NA	NA	NA	66261264	66271958	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66269233_66269316
103754	chr17	+	3355	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	38	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	900.36554859332	1	119	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATTCTGGCCGGGC	537	False	NA	NA	False	NA	NA	NA	56610437	56630465	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617828_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622355_56622743_56622882_56624003_56624115_56624997_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629548_56629592
103755	chr4	-	2345	10	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	55	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	722.258665747192	1	86	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGGCCAGAGCTGAGTC	NA	False	NA	NA	False	NA	NA	NA	137523640	137469052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471039_137476859_137477004_137479862_137480039_137481175_137481354_137482395_137482512_137482940_137483101_137485734_137486044_137523552
103757	chr11	+	4726	30	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	-21	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_26	57.7268569375694	1	163	14	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84771157	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84771338_84773411_84773554_84776027_84776167_84776496_84776646_84778879_84778994_84782901_84783035_84784150_84784221_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788184_84788290_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
103758	chr17	+	2474	16	ISM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	-8	1247	-8	-100	5prime_fragment	FALSE	canonical	3	348	junction_6	516.463831152665	1	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTTTGGGATGTTGCCA	491	False	NA	NA	False	NA	NA	NA	56610391	56629239	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020
103759	chr8	-	3233	20	Intergenic	novelGene_1753	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	88	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGTCTCCTCGGGAACT	NA	False	NA	NA	False	NA	NA	NA	111782168	111763558	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111763704_111766761_111766951_111767226_111767372_111768111_111768299_111768869_111769016_111769292_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774660_111776331_111776533_111776973_111777162_111779044_111779146_111779817_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
103760	chr12	-	1324	7	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	317	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3693.74370839848	10	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638399	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637464_111637655_111637775_111637858_111638014_111638199
103762	chr15	-	4809	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	116	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATGACCGTGGGCCCGA	9381	False	NA	NA	False	NA	NA	NA	22704864	22699878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22702108_22702191_22704588_22704680
103763	chr18	-	6266	34	NNC	ENSMUSG00000024370.18	novel	4133	16	NA	NA	27	6313	intron_retention	FALSE	non_canonical	0	0	junction_1	548.414257972117	1	132	12	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGGCACCGCGAACGGATT	NA	False	NA	NA	False	NA	NA	NA	34784744	34757690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_34758113_34758509_34758693_34759766_34759856_34759944_34760066_34760603_34760748_34760841_34761024_34761103_34761234_34761435_34761631_34761725_34761842_34761938_34762007_34762193_34762337_34762474_34762640_34763050_34763218_34763337_34763478_34763572_34763676_34764196_34764389_34764568_34764664_34764976_34765115_34765351_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
103764	chr15	+	1257	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	-181	-74	181	mono-exon	FALSE	NA	NA	NA	NA	NA	28	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	88	False	NA	NA	False	NA	NA	NA	12574900	12576157	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12576200
103765	chr5	+	2701	17	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4921	36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	751.870708632807	1	68	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGACTAGACTTCATTGT	NA	False	NA	NA	False	NA	NA	NA	108208618	108255372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108217031_108217230_108221172_108221321_108228787_108228889_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
103767	chr14	+	1697	11	NNC	ENSMUSG00000021939.9	novel	4743	10	NA	NA	5	1267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	2249.16024551387	1	73	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACATTGGCAGGGTGCA	NA	False	NA	NA	False	NA	NA	NA	63359967	63380579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680_63379881_63380076
103768	chr17	-	2971	18	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	121	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGAGCGCGGGTTCCTTCC	NA	False	NA	NA	False	NA	NA	NA	56630473	56610441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56610560_56612083_56612249_56616334_56616586_56617680_56617834_56619053_56619279_56619870_56619968_56620039_56620251_56622190_56622314_56622396_56622505_56622774_56622881_56624002_56624098_56624981_56625149_56625244_56625377_56627147_56627281_56627394_56627542_56629019_56629124_56629351_56629464_56629949
103769	chr6	+	1245	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-5517	391	multi-exon	FALSE	non_canonical	0	0	junction_1	0	46321	82	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAACCAAAACACCAAATGCA	7743	False	NA	NA	False	NA	NA	NA	116145180	116151475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_116145540_116150589
103770	chr6	-	1711	11	Antisense	novelGene_ENSMUSG00000030007.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	58	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGAAGAGAGCAATTGAC	6602	False	NA	NA	False	NA	NA	NA	85445370	85436095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_-_85436252_85436933_85437043_85438040_85438152_85438488_85438543_85439007_85439177_85441758_85441925_85442876_85443070_85443604_85443710_85444012_85444145_85444577_85444775_85445051
103771	chr8	+	3298	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	0	-2098	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	1250.49867952749	1	133	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGGTGATGTCATGCG	NA	False	NA	NA	False	NA	NA	NA	111760510	111782198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760541_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769305_111769441_111769864_111769974_111770278_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780763_111780844_111781140_111781255_111781650
103772	chr17	-	2501	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	16	3	0	-3	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	6	39	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45884181	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
103773	chr12	+	2632	10	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	0.942809041582063	2	97	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTCCTCAGGCATCTG	NA	False	NA	NA	False	NA	NA	NA	110657464	110662097	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658087_110658551_110658880_110659035_110659305_110659451_110659602_110659745_110659937_110660144_110660313_110660461_110660776_110661002_110661136_110661482_110661825_110661982
103774	chr1	-	2164	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	183	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2449.10036442799	2	70	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTCTGGTTGTGTTAC	4638	False	NA	NA	False	NA	NA	NA	55127000	55116999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117533_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121314_55122231_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
103775	chr6	+	2222	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	-36	-1230	-36	-7	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	6	69	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAATGACTGGCACAGC	NA	False	NA	NA	False	NA	NA	NA	117893905	117902573	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
103776	chr4	+	2568	2	NIC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-7630	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	1	85	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147409233	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr4_+_147409335_147415724
103777	chr6	-	2584	23	NNC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	211.907418775822	36307	108	12	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATTCTTTGTAAGCGTG	3027	False	NA	NA	False	NA	NA	NA	71885755	71857626	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865658_71866573_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
103778	chr14	+	2009	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	7	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	578.24940873141	2	43	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCCTCAGACTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	30271144	30295577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30288993_30290152_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
103779	chr17	+	1808	11	NNC	ENSMUSG00000068039.14	novel	1902	11	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1391.40843751934	1	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	13135277	13143443	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136929_13137061_13138271_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
103780	chr4	+	2714	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	11	271	-7	-271	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	1	111	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTATATTTAATTTAAATA	905	False	NA	NA	False	NA	NA	NA	145237339	145265487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
103781	chr5	-	1765	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-12	intron_retention	FALSE	non_canonical	0	0	junction_3	1656.31755409402	1	61	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTACACAAACAGCTTGTGG	8918	False	NA	NA	False	NA	NA	NA	142892480	142888881	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890538_142891105_142891232_142891318_142891448_142892406
103782	chr11	-	4965	26	NNC	ENSMUSG00000020899.17	novel	6373	28	NA	NA	4584	-571	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	190.383965711401	1	270	19	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTACTGACCTAATGGAG	NA	False	NA	NA	False	NA	NA	NA	68894693	68877856	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_68879100_68879192_68879517_68880796_68880912_68880995_68881088_68881193_68881402_68881498_68881645_68881865_68881986_68882163_68882320_68882510_68882595_68882681_68882863_68883005_68883237_68883482_68883613_68883741_68883865_68884122_68884349_68884633_68884785_68885079_68885158_68888489_68888619_68888738_68888871_68890833_68890964_68891070_68891186_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521
103783	chr17	+	2532	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	9	357	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	850.532698427139	1	55	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGATTTATTGTCCAAG	508	False	NA	NA	False	NA	NA	NA	56610408	56629696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616488_56617747_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625144_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629121_56629355
103784	chrX	+	3747	24	NNC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	-7	-762	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	278.285372562466	3	111	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTGTTTGCAAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	150799416	150844928	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_150799637_150805741_150805935_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150812002_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820684_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
103785	chr6	-	2155	4	Genic_Genomic	ENSMUSG00000042087.6_ENSMUSG00000107608.2	novel	1192	1	NA	NA	-7899	322	multi-exon	FALSE	non_canonical	0	0	junction_1	13.6707311029399	4	97	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGGTGATGGGGCGGAG	5175	False	NA	NA	False	NA	NA	NA	117902582	117883748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_117883800_117894431_117894559_117896058_117896126_117900672
103786	chr4	+	2911	5	Intergenic	novelGene_2115	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_2	202.216931783666	1	52	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGTCTAATAAAACTGG	NA	False	NA	NA	False	NA	NA	NA	146800420	146805704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146800518_146802050_146802587_146803007_146803992_146804326_146804536_146804619
103787	chr2	+	4514	5	NNC	ENSMUSG00000078866.11	novel	1569	4	NA	NA	37	1020	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	44.2965856472031	1	220	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGAACCTGTAAGCCAGC	NA	False	NA	NA	False	NA	NA	NA	177156562	177170942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177156642_177165078_177165206_177165410_177165472_177166618_177167990_177168066
103788	chr4	+	2172	7	Genic_Genomic	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-43233	-3	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	95	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147533640	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_147533786_147534439_147534555_147536170_147536264_147541451_147541457_147597025_147597092_147599018_147599200_147668085
103789	chr6	-	2720	11	NNC	ENSMUSG00000004980.17	novel	1728	12	NA	NA	0	-642	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2867.37584038089	2	89	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAACTATACATGCTTATC	NA	False	NA	NA	False	NA	NA	NA	51446874	51438766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440399_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444272_51446650
103790	chr5	+	2013	9	NNC	ENSMUSG00000029247.18	novel	2345	10	NA	NA	2	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1120.13157709262	1	62	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTCTCGCTGTGTGGTCT	758	False	NA	NA	False	NA	NA	NA	77099625	77115353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114091_77114253_77114494
103791	chr2	+	3474	26	NNC	ENSMUSG00000002718.15	novel	3641	25	NA	NA	-2	-122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	239.219015966541	1	104	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTTCAGGACAGGATTT	NA	False	NA	NA	False	NA	NA	NA	166747957	166788187	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783334_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623_166787687_166787744
103792	chr4	+	4323	6	Fusion	ENSMUSG00000066009.9_ENSMUSG00000066007.16	novel	410	4	NA	NA	1	3	multi-exon	FALSE	canonical	1	2	junction_1	188.754867486907	3	152	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146033868	146135328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034017_146094927_146095022_146102109_146102186_146126781_146126867_146129876_146130004_146131535
103793	chr19	+	2622	23	NNC	ENSMUSG00000071650.7	novel	3860	25	NA	NA	-3	-1453	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	476.677362427921	1	61	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTCCTGTTGCGGCGGT	1890	False	NA	NA	False	NA	NA	NA	8875461	8892583	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884750_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888294_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891723_8891905_8891983_8892065_8892145_8892303_8892403_8892521
103794	chr4	+	1994	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-10770	-7	multi-exon	TRUE	non_canonical	0	0	junction_1	0.4	3	35	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATTTGCTTTGATTGT	NA	False	NA	NA	False	NA	NA	NA	145162539	145265751	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145162684_145173283_145173342_145174456_145174578_145176036_145176445_145264319_145264571_145264739
103795	chr5	+	1868	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	80	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	800.742294513174	1	41	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGTTAGATACTTT	NA	False	NA	NA	False	NA	NA	NA	108208600	108255109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208734_108228775_108228894_108229002_108229089_108234864_108234961_108235160_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251955_108254522
103796	chr4	-	2700	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	108.849621037466	1	86	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9497	False	NA	NA	False	NA	NA	NA	147894271	147838430	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_147839142_147839409_147840693_147842158_147842286_147845677_147845798_147891499_147891641_147893953
103797	chr4	+	3333	12	NNC	ENSMUSG00000028580.16	novel	5058	20	NA	NA	86021	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	276.533022253571	1	105	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	NA	False	NA	NA	NA	130476737	130508873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_130476862_130478736_130478881_130479886_130480184_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500066_130501722_130501916_130507082_130507536_130507674
103798	chr16	-	1626	6	NNC	ENSMUSG00000022814.7	novel	3484	6	NA	NA	0	-1803	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	469.825329244816	1	91	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAAGACTGGTATTTGTT	8675	False	NA	NA	False	NA	NA	NA	33787373	33776966	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782603_33784141_33784296_33787195
103799	chr6	-	2408	18	NNC	ENSMUSG00000063884.7	novel	2666	25	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	451.248563915705	1	156	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3055	False	NA	NA	False	NA	NA	NA	71885727	71857621	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860629_71862288_71862384_71862481_71862561_71865540_71865657_71866573_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872894_71872977_71875294_71875440_71878179_71878304_71879839_71879945_71880409_71880524_71884777_71884831_71885617
103800	chr6	-	2111	12	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-44096	-64	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	856.581404467397	1	92	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGGTCTATATATATTGA	NA	False	NA	NA	False	NA	NA	NA	124986597	124935842	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124943600_124943719_124944866_124944985_124958964_124959062_124961280_124961400_124986527
103801	chr11	+	1216	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	-15	-214	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3901.83149302991	1	54	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGACAGTATTGTTTGT	3068	False	NA	NA	False	NA	NA	NA	75623771	75656457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75655546_75656138
103802	chr4	+	2342	2	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	7	1909	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	61	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	145136821	145178235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145176068
103803	chr12	+	4598	2	Intergenic	novelGene_4394	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	181	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	68605075	68610272	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68609111_68609709
103804	chr5	+	3597	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	-218	intron_retention	FALSE	non_canonical	0	0	junction_3	628.784902873497	1	88	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTTAATTTTAACTGAACA	NA	False	NA	NA	False	NA	NA	NA	108208601	108256652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248773_108251957_108251992_108252131_108252185_108252291_108252397_108254453
103805	chrX	+	2075	9	NNC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	757	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1260.30274140779	1	69	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTTTTCATTTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	100474097	100492186	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487905_100489787_100489835_100491199
103806	chr11	+	1961	2	Intergenic	novelGene_2363	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	89	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTCTCGGGCCCACGGTC	NA	False	NA	NA	False	NA	NA	NA	57448857	57450868	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57450377_57450426
103807	chr18	+	2108	15	Antisense	novelGene_ENSMUSG00000047879.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATTCAAACCGGCCAC	NA	False	NA	NA	False	NA	NA	NA	9995594	10030054	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_+_9996249_9997172_9997285_9997722_9997775_10000494_10000624_10001769_10001864_10002367_10002434_10004895_10005015_10005633_10005716_10007766_10007850_10009953_10010083_10012212_10012269_10016534_10016645_10017990_10018098_10024505_10024682_10029915
103808	chr4	+	1661	1	ISM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	35702	3	22809	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	55	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGTTGACTTGGCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146622185	146623846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_+_146622200_146623800
103809	chr7	-	3152	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	-6	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	2559.07981265304	2	78	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTAGTTGTACATGACTTC	NA	False	NA	NA	False	NA	NA	NA	110682243	110671139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671235_110671725_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674888_110675886_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677644_110677761_110678499_110678603_110679388_110679526_110680105_110680172_110680713_110680816_110681991
103810	chr4	-	4291	8	Antisense	novelGene_ENSMUSG00000095460.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	6.64861501612577	1	161	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCCGCCCAATATTCACC	NA	False	NA	NA	False	NA	NA	NA	146806334	146586396	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146586610_146597235_146597317_146797279_146797379_146800388_146800505_146802047_146802600_146802685_146803275_146803441_146804226_146804477
103811	chr12	-	5033	2	Intergenic	novelGene_4393	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	32	204	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTAGCCAAGACAGTTAC	NA	False	NA	NA	False	NA	NA	NA	68610272	68605073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_68605324_68605489
103812	chr9	-	4106	24	NNC	ENSMUSG00000032480.18	novel	4623	23	NA	NA	8	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	239.206643982812	1	192	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGAGTGCTGCTGTCCT	NA	False	NA	NA	False	NA	NA	NA	109946471	109913394	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_109913715_109913796_109913937_109914017_109914112_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915096_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927792_109927928_109938093_109938190_109942038_109942159_109944103_109944224_109944558_109944651_109945745_109945861_109946425
103813	chr6	-	3563	24	NNC	ENSMUSG00000012535.15	novel	3590	24	NA	NA	-32	-52	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	187.895588992794	1	139	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACCAGAAA	-9	True	NA	NA	False	NA	NA	NA	29609850	29540877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_29540977_29541578_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558748_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
103814	chr4	+	3830	4	Intergenic	novelGene_2100	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	220.145911209412	1	114	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146428070	146806011	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146428160_146800399_146800518_146802050_146802591_146802928
103815	chr2	-	4381	4	FSM	ENSMUSG00000095362.8	ENSMUST00000108939.9	1576	4	-5	-2800	-5	2800	multi-exon	FALSE	canonical	3	248	junction_1	217.946476609893	1	173	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	177482116	177470783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_177474890_177476043_177476105_177476312_177476440_177482029
103816	chr4	+	4636	10	Fusion	ENSMUSG00000082082.2_ENSMUSG00000078502.11	novel	1575	3	NA	NA	-32699	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	0.314269680527354	1	281	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145140610	145351906	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145140711_145160315_145160385_145173283_145173348_145174460_145174578_145176036_145176742_145177162_145177332_145263948_145264487_145264739_145264966_145335557_145337358_145351058
103817	chr6	-	3041	20	NNC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	4	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	269.544819969331	1	90	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGGGGCTGACTGGTTT	7936	False	NA	NA	False	NA	NA	NA	124806367	124791994	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124792623_124793946_124794032_124794280_124794441_124794639_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801943_124802074_124802142_124803261_124803388_124806247
103819	chr11	-	2297	17	NNC	ENSMUSG00000040667.12	novel	2453	17	NA	NA	0	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	329.200066211643	1	54	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTTTGAATAAATTTT	NA	False	NA	NA	False	NA	NA	NA	70860788	70833932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838626_70840971_70841063_70842085_70842166_70845416_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858847_70860474
103820	chr13	+	3331	26	NNC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-28	-7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	270.966270963749	1	145	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGTCTGAGTTTTACT	NA	False	NA	NA	False	NA	NA	NA	6598242	6630071	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_6598266_6599618_6599719_6602669_6602796_6605290_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608193_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
103821	chr4	+	2839	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-33	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	82.8322853723112	2	105	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033834	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061518_146061559
103822	chrX	-	1791	4	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	1	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1370.18279396907	1	113	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAATGTGTGGTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	135642024	135633696	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135635251_135636294_135636372_135640549_135640644_135641958
103823	chr7	+	1344	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	471	158	6	30	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATGATGCATATCTTGTG	NA	False	NA	NA	False	NA	NA	NA	46497025	46504892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
103824	chr2	+	808	3	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11263	209	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	39	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCAACCCCCCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	11413771	11426240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414147_11425685_11426004_11426125
103825	chr12	+	3335	10	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	54	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAACACAGAGGACGACTC	NA	False	NA	NA	False	NA	NA	NA	110656841	110662115	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658088_110658551_110658880_110659035_110659305_110659451_110659602_110659745_110659937_110660144_110660311_110660456_110660776_110661002_110661137_110661483_110661852_110661951
103826	chr1	+	2059	15	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	43	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGTCCGGAAACGCGTG	NA	False	NA	NA	False	NA	NA	NA	20875486	20890459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20875563_20876019_20876119_20876960_20877107_20878944_20879095_20879818_20879954_20880359_20880457_20882188_20882397_20882786_20882918_20883182_20883338_20884621_20884731_20884911_20885124_20886889_20887003_20887464_20887680_20888018_20888126_20890353
103827	chr4	+	2024	6	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2800	4	NA	NA	-3429	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	22	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147413434	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147413510_147596801_147597025_147597697_147597765_147599018_147599263_147668064_147668424_147668594
103828	chr13	+	2499	4	Fusion	ENSMUSG00000074867.5_ENSMUSG00000113836.2	novel	2707	4	NA	NA	13	1143	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	130	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCAGCCAGTAATTTTGT	NA	False	NA	NA	False	NA	NA	NA	62163810	62385101	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_+_62163867_62261014_62261120_62318963_62319112_62382911
103830	chr19	-	1945	13	ISM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	4261	76	4261	-76	3prime_fragment	FALSE	canonical	3	2912	junction_9	218.166348357293	1	82	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCAGCTGTCTTCACCT	8024	False	NA	NA	False	NA	NA	NA	7013074	6998145	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863
103831	chr15	+	3661	14	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	8201	4	-4050	-4	3prime_fragment	FALSE	canonical	3	745	junction_2	66.2960903646145	1	168	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGGTTAATGTTGCAGT	NA	False	NA	NA	False	NA	NA	NA	101990408	102005604	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
103832	chr15	-	2127	6	NNC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-75	-182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1645.44588485918	1	103	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACCCTACCGAGTATTT	683	False	NA	NA	False	NA	NA	NA	36793838	36771195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36772524_36775488_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722
103833	chr5	+	1735	7	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	75	43	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGCGCGTTGCGCCGCCG	NA	False	NA	NA	False	NA	NA	NA	142888899	142892480	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889052_142889179_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891318_142891448_142892406
103834	chr6	+	1801	8	NNC	ENSMUSG00000036371.7	novel	1617	8	NA	NA	2	310	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	2262.72684509426	2	64	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTGGCTCATGCATGG	5901	False	NA	NA	False	NA	NA	NA	67244023	67261605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244394_67248278_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
103835	chr19	-	2051	9	NNC	ENSMUSG00000024640.10	novel	2617	9	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	1101.94616900056	1	128	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	NA	False	NA	NA	NA	15902318	15882493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894605_15895569_15895776_15896818_15896889_15898299_15898361_15902227
103836	chr11	+	1700	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-73	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1369.96909940821	1	39	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACCTCATCCTCTTGTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265190_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279586_52279689
103837	chr16	-	564	1	Intergenic	novelGene_3729	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	19	8	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACAGACGGACACACACA	NA	False	NA	NA	False	NA	NA	NA	57212039	57211475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_57211500_57212000
103838	chr17	-	4133	10	NNC	ENSMUSG00000005371.16	novel	3753	23	NA	NA	10094	15708	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	40	168	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGAAGGCTGACGGGCA	7075	False	NA	-30	True	NA	NA	NA	88298316	88282578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_88282832_88287616_88287839_88290913_88291041_88291875_88294408_88295611_88295880_88296568_88296688_88296852_88296943_88297619_88297776_88297857_88298058_88298150
103839	chr4	+	2678	4	NNC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	3	-236	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	233.962960031426	1	122	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATCCTTAAAAGAGTATC	5022	False	NA	NA	False	NA	NA	NA	145241456	145265522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145241542_145257381_145257486_145261385_145261513_145263160
103840	chr17	+	2625	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	23	132	intron_retention	FALSE	canonical	0	0	junction_12	574.059679437213	2	55	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTCCCTGGCTATGGCA	443	False	NA	NA	False	NA	NA	NA	56610343	56629471	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625389_56627161_56627283_56627396_56627543_56629020_56629126_56629355
103841	chr4	+	4331	5	Intergenic	novelGene_2108	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	192.614251809154	2	166	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146712316	146806002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146712391_146714050_146714144_146797295_146797381_146800390_146800518_146802050
103842	chr2	-	3067	4	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	0	1725	combination_of_known_splicesites	FALSE	canonical	3	54	junction_1	307.214365983537	1	125	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGAAGGTATGTTTCTG	2348	False	NA	NA	False	NA	NA	NA	177269992	177259271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr2_-_177262087_177263479_177263607_177266761_177266817_177269922
103843	chr13	-	2768	4	NNC	ENSMUSG00000074832.12	novel	2587	4	NA	NA	16	169	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	82.3097132110718	1	139	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	66589123	66577781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_66580319_66581478_66581540_66581739_66581867_66589080
103844	chr4	+	2534	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6_ENSMUSG00000065999.14	novel	2813	7	NA	NA	1	4	multi-exon	TRUE	non_canonical	0	0	junction_1	19.1816970052183	7	110	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGTTGTTTTCAATTT	NA	False	NA	NA	False	NA	NA	NA	147216495	147669659	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147316807_147316901_147390101_147390233_147536170_147536307_147596958_147597165_147599008_147599221_147668023_147668422_147668589
103846	chr9	-	2850	15	NNC	ENSMUSG00000050471.18	novel	1662	7	NA	NA	18435	5767	intron_retention	FALSE	non_canonical	0	0	junction_1	16.7400594932257	1	86	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACGTCACACCAGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	35128306	35122493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35122699_35123284_35123370_35123641_35123807_35124015_35124175_35124423_35124590_35124680_35124829_35125037_35125351_35125481_35125570_35125855_35126027_35126111_35126327_35126761_35126924_35127003_35127112_35127236_35127452_35127608_35128045_35128092
103847	chr14	-	3206	18	NNC	ENSMUSG00000021807.7	novel	1562	8	NA	NA	11584	42671	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	174	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCTCCGCTGGGTCCCTG	NA	False	NA	NA	False	NA	NA	NA	19861539	19818747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_19819004_19828061_19828212_19828803_19829062_19829611_19829804_19831200_19831431_19839734_19839875_19840351_19840475_19841575_19841717_19847240_19847349_19848461_19848711_19852404_19852626_19853114_19853287_19855365_19855504_19855931_19856081_19857992_19858152_19860047_19860163_19861015_19861133_19861251
103848	chr9	+	4612	29	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	-28	-824	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	898.795488616372	1	153	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAAGCCACCAGAGTCTGA	NA	False	NA	NA	False	NA	NA	NA	72569691	72656310	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632362_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639944_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
103849	chr11	+	1595	6	ISM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	2138	-870	2138	-4	3prime_fragment	FALSE	canonical	3	3141	junction_3	168.597034374867	1	52	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	1478	False	NA	NA	False	NA	NA	NA	52267227	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103850	chr4	-	4310	6	Antisense	novelGene_ENSMUSG00000095460.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	4	186	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGCTGAAAAGGCGGGAC	136	False	NA	NA	False	NA	NA	NA	146806007	146599355	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146599497_146697963_146698036_146797284_146797379_146800388_146800517_146802049_146803947_146804029
103851	chrX	+	3013	25	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	2	246	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_20	797.983495895888	1	46	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGCAACGATGAAAGCGGC	NA	False	NA	NA	False	NA	NA	NA	20524661	20548690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20545905_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
103852	chr4	+	2637	4	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4290	-201	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	93.6055553906925	3	65	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAAACGTTATAAGATGAAG	NA	False	NA	NA	False	NA	NA	NA	146038204	146062990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146054375_146054454_146058433_146058581_146060726
103853	chr17	+	3368	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	5	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	745.031435473531	1	137	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCAGTGGTGGCGCAC	504	False	NA	NA	False	NA	NA	NA	56610404	56630478	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610518_56612159_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624103_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
103854	chr11	-	817	1	Antisense	novelGene_ENSMUSG00000019505.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTCACGAAGATCTGCA	NA	False	NA	NA	False	NA	NA	NA	62444037	62443220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_62443200_62444000
103855	chr10	+	2118	3	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	70	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCGGGGCGGGACCGAGA	3614	False	NA	NA	False	NA	NA	NA	62675935	62715770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62676160_62700588_62700640_62713927
103856	chr1	+	806	1	Antisense	novelGene_ENSMUSG00000067736.3_AS_novelGene_ENSMUSG00000100131.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	50	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTGGTAATTATGAACATCA	NA	False	NA	NA	False	NA	NA	NA	24650975	24651781	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24651000_24651800
103857	chr4	+	4001	6	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-47	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	186.196240563552	1	119	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	145397207	145431003	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422723_145422806_145425813_145425941_145427474_145427684_145427724
103858	chr13	-	918	1	Genic_Genomic	ENSMUSG00000113311.2	novel	NA	NA	NA	NA	-577	-2214	mono-exon	FALSE	NA	NA	NA	NA	NA	23	3	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGTTATCTCTTAAGGT	8419	False	NA	NA	False	NA	NA	NA	74555433	74554515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr13_-_74554500_74555400
103859	chr5	+	1064	7	NNC	ENSMUSG00000067274.11	novel	1358	7	NA	NA	-22	-240	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	7941.6086251814	5	80	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAATAAAGGCTTACTTC	NA	False	NA	NA	False	NA	NA	NA	115697573	115701546	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701347
103860	chr4	+	2052	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000066007.16_ENSMUSG00000070605.5	novel	410	4	NA	NA	2	-1902	multi-exon	TRUE	non_canonical	0	0	junction_3	54.1290182553125	1	58	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146033883	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146034017_146094927_146095022_146209452_146209631_146218092_146218154_146312913_146312972_146388486_146388614_146390758_146390897_146392150_146392505_146392757_146393429_146552609
103861	chr11	-	3444	14	NNC	ENSMUSG00000038909.17	novel	3470	14	NA	NA	18	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	279.218033191217	1	213	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGACTGCTCTGAAGC	NA	False	NA	NA	False	NA	NA	NA	95201054	95165085	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191030_95193950_95194136_95196874_95197023_95200860
103862	chr15	-	3284	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	17	junction_1	0	2	153	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTCTTGCAATTTACAAC	9795	False	NA	NA	False	NA	NA	NA	22705095	22699840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22700670_22702640
103863	chr19	-	4980	3	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	203	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCCAACAACTCCCTTC	NA	False	NA	NA	False	NA	NA	NA	22705253	22699999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700552_22700765_22701514_22701573
103864	chr12	-	1672	6	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	TRUE	non_canonical	0	0	junction_5	3141.91887864725	1211	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111638014_111638199_111638404_111638663
103865	chr5	+	6346	3	Antisense	novelGene_ENSMUSG00000091273.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	95	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTGCTGCTGTGGCTTAG	NA	False	NA	NA	False	NA	NA	NA	17238743	17450333	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_17241833_17436302_17436451_17447224
103866	chr1	-	2769	16	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	2386	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1018.4556194989	1	165	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGACTTCATGCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	20888098	20873235	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873887_20875040_20875127_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883192_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016
103867	chrX	-	1506	4	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-1	-29	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1353.87378371184	1	59	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAAAACTTGTTTCTAAA	NA	False	NA	NA	False	NA	NA	NA	135642026	135633730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135635005_135635171_135635251_135636294_135636372_135641950
103868	chrX	-	1939	14	Intergenic	novelGene_4091	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	35	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACGCATCAGGGAGAGAAG	NA	False	NA	NA	False	NA	NA	NA	150844962	150819095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_150819245_150819336_150819473_150820363_150820480_150820583_150820693_150824321_150824462_150829652_150829802_150829890_150830045_150830853_150830963_150841772_150841931_150842352_150842507_150842622_150842770_150843967_150844046_150844300_150844398_150844719
103869	chr11	+	1810	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-88	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1514.39680185524	1	78	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5318	False	NA	NA	False	NA	NA	NA	52251873	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52274642_52274903_52276409_52276561_52278242_52278301_52279258
103870	chr13	-	1823	10	NNC	ENSMUSG00000041431.17	novel	2489	9	NA	NA	-13	406	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1509.80323303043	1	60	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAAAAGAATTTGCCCCC	NA	False	NA	NA	False	NA	NA	NA	100923007	100915710	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_100915793_100915838_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919968_100920156_100921964_100922127_100922240_100922412_100922889
103871	chr19	+	5014	6	NNC	ENSMUSG00000025203.7	novel	2166	6	NA	NA	14	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	1062.75159844622	1	254	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATGATCTGACTGCAAAAT	1483	False	NA	NA	False	NA	NA	NA	44282528	44295284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288258_44289660_44289884_44291439
103872	chr5	-	3768	26	NNC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	213.354165649513	3	148	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8162	False	NA	NA	False	NA	NA	NA	100564039	100509507	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_100509893_100511739_100511807_100513589_100513854_100516152_100516212_100521283_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536392_100536471_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
103873	chr17	+	2559	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-31	537	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	611.520821849555	1	61	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGCAGCTATCTGTGT	468	False	NA	NA	False	NA	NA	NA	56610368	56629876	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612134_56617684_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
103874	chr15	+	2149	8	ISM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	15214	592	2963	-592	3prime_fragment	FALSE	canonical	3	809	junction_1	45.8066032135017	1	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACGATTGAGCAAGGTCC	NA	False	NA	NA	False	NA	NA	NA	101997421	102005016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_+_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
103875	chr4	-	2147	13	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	65	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	591.226426591369	2	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATATTTCTGAGGCCA	NA	False	NA	NA	False	NA	NA	NA	137523630	137469062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137469146_137469433_137470014_137470495_137470616_137470945_137471135_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
103876	chrX	-	1609	12	NNC	ENSMUSG00000035150.16	novel	3647	12	NA	NA	5	-1936	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	324.168535902887	1	67	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATTCATCCCCTCATAT	NA	False	NA	NA	False	NA	NA	NA	93256252	93234248	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_93234481_93239868_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
103877	chr17	+	2910	16	NNC	ENSMUSG00000097119.3	novel	437	3	NA	NA	-41657	-2473	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	189	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGTGAAGGAAAACAAAACT	3282	False	NA	NA	False	NA	NA	NA	45702866	45744644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_45703233_45703924_45704132_45715519_45715720_45718723_45718958_45719254_45719342_45721698_45721867_45722754_45722889_45724034_45724135_45726430_45726668_45727870_45728011_45730522_45730739_45735430_45735527_45736777_45736905_45737444_45737604_45738856_45738977_45744325
103878	chr15	+	3313	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	152	389	61	-389	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	2	114	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATCGCTTCTCCGGTGGA	NA	False	NA	-33	True	NA	NA	NA	101982359	102005219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
103879	chr16	-	2123	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	76	1204	-3	695	multi-exon	FALSE	canonical	3	1235	junction_5	313.549014310363	89	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGGCCAAGTAGAACTGG	NA	False	NA	NA	False	NA	NA	NA	22084679	22064502	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
103880	chr4	+	3477	7	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	4	2481	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	203.919646484154	1	108	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	2381	False	NA	NA	False	NA	NA	NA	147445771	147477942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147445910_147447267_147447362_147469676_147469759_147472778_147472906_147474656_147475884_147476050_147477392_147477474
103881	chr6	+	2142	4	NNC	ENSMUSG00000042079.14	novel	2147	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1996.08973300857	4	64	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	3728	False	NA	NA	False	NA	NA	NA	117883749	117902582	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117883801_117894430_117894560_117896059_117896108_117900668
103883	chr9	+	5046	29	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	38	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1001.9019667714	1	191	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAAACACAAAATTGCA	NA	False	NA	NA	False	NA	NA	NA	72569809	72656867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644231_72646326_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649932_72650043_72650821_72650919_72653688_72653766_72654416
103884	chr2	+	3959	17	Antisense	novelGene_ENSMUSG00000027184.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	162	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCGGCTACGCGCGCGCGC	NA	False	NA	NA	False	NA	NA	NA	103595368	103627397	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_103597211_103598750_103598830_103599161_103599248_103599778_103599977_103602051_103602195_103603014_103603163_103603317_103603458_103605777_103605870_103605953_103606109_103606276_103606366_103606449_103606508_103608310_103608446_103609508_103609597_103609680_103609906_103613286_103613391_103613490_103613551_103627080
103885	chr1	+	2805	17	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	126	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGCAGCTCCGAAA	NA	False	NA	NA	False	NA	NA	NA	20873240	20890427	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873881_20875043_20875095_20875471_20875561_20876018_20876127_20876966_20877107_20878945_20879094_20879818_20879947_20880281_20880454_20882187_20882384_20882811_20882928_20883191_20883340_20884624_20884742_20884918_20885151_20886871_20887003_20887465_20887676_20888016_20888124_20890355
103886	chr14	+	1585	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	165	415	-4	29	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTCTTTTGAG	1851	False	NA	NA	False	NA	NA	NA	26359393	26377998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
103887	chr2	-	2259	6	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	10	2233	multi-exon	FALSE	non_canonical	0	0	junction_1	67.0194001763668	1	41	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTTCTCTAAGGCCCC	NA	False	NA	NA	False	NA	NA	NA	156681710	156629498	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr2_-_156629506_156631635_156632366_156643024_156644081_156679742_156679834_156680337_156680457_156681454
103888	chr15	+	3611	13	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	-4052	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	376.566607285115	1	181	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGGTTAATGTTGCAG	NA	False	NA	NA	False	NA	NA	NA	101990406	102005603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101990549_101992595_101992805_101993113_101993252_101994932_101995064_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003480_102003695
103890	chrX	+	2049	16	NNC	ENSMUSG00000001924.16	novel	4044	26	NA	NA	-31	-5175	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_9	864.07413776571	3	27	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATTTGTACCCTGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	20524533	20542264	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537622_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117
103891	chr1	+	3193	23	NNC	ENSMUSG00000026553.18	novel	4622	33	NA	NA	2537	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_15	238.164329684116	1	102	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCTGCTTGCCGTTTCCC	1845	False	NA	NA	False	NA	NA	NA	171929839	171949893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171945615_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
103892	chr4	-	2697	18	NNC	ENSMUSG00000028809.17	novel	3152	18	NA	NA	-15	-237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	414.026602625557	1	106	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAAATTTTATTTGGT	NA	False	NA	NA	False	NA	NA	NA	135080477	135048641	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059552_135065252_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071977_135074045_135074169_135074425_135074516_135080407
103893	chr17	+	5770	3	NNC	ENSMUSG00000039218.18	novel	2092	2	NA	NA	388	45	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	109.5	1	64	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	24031261	24043346	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_24031595_24034095_24039459_24043272
103894	chr16	-	3650	1	Intergenic	novelGene_3843	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	67	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTCTTTCCTAGGGTTT	NA	False	NA	NA	False	NA	NA	NA	58802763	58799113	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_-_58799100_58802800
103895	chr4	+	2305	9	Fusion	ENSMUSG00000078503.10_ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36449	-1	multi-exon	TRUE	non_canonical	0	0	junction_1	0.330718913883074	2	59	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTTTGATTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	145136860	145265757	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145136958_145138756_145138793_145162615_145162684_145173287_145173342_145174457_145174578_145176036_145176401_145177320_145177327_145263944_145264487_145264739
103896	chr17	-	2081	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	5	-493	intron_retention	FALSE	non_canonical	0	0	junction_1	3180.35355896164	20	15	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCAACCGCATCTACCGC	NA	False	NA	NA	False	NA	NA	NA	45884192	45879193	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879383_45879427_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
103897	chr17	+	2585	13	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	47	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	972.629682870104	1	84	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCGGGCAGTGGTGGCGC	546	False	NA	NA	False	NA	NA	NA	56610446	56630476	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612154_56620083_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627287_56627396_56627543_56629020_56629121_56629355
103898	chr7	+	3002	28	NNC	ENSMUSG00000056394.21	novel	3091	28	NA	NA	-4	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	460.302262474894	2	160	19	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTTAGATGCCTACTTG	2616	False	NA	NA	False	NA	NA	NA	13012747	13045335	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_13012885_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023412_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037786_13039832_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043095_13043182_13044933_13045027_13045120
103899	chr7	-	2178	18	NNC	ENSMUSG00000010755.18	novel	2462	22	NA	NA	10253	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_17	345.680493317467	1	64	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTCTGCCCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	143140236	143111441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138601_143140136
103900	chr2	-	1907	3	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	66	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCCTCTTCCTGCTGG	NA	False	NA	NA	False	NA	NA	NA	29962576	29960253	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29960365_29960449_29960598_29960928
103901	chr7	+	2359	21	Genic_Genomic	ENSMUSG00000109168.2	novel	448	2	NA	NA	1902	19557	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	119	13	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGCTGCAGAGGAAGACC	NA	False	NA	NA	False	NA	NA	NA	28016224	28037855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_28016314_28016409_28016506_28016614_28016746_28016825_28016928_28017163_28017265_28018187_28018294_28018383_28018525_28019389_28019526_28019636_28019796_28021423_28021566_28021647_28021743_28021896_28021998_28023156_28023224_28023320_28023402_28025373_28025625_28028128_28028238_28028700_28028749_28028839_28028927_28029991_28030074_28030797_28030954_28037776
103902	chr15	+	3089	2	Intergenic	novelGene_3279	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	165	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCCACGGTCATACACCAC	NA	False	NA	NA	False	NA	NA	NA	39105325	39110499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_39106174_39108258
103903	chr17	+	2229	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	170	11	-6	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	4	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165742	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
103904	chr9	+	3575	30	NNC	ENSMUSG00000032216.16	novel	5699	30	NA	NA	11	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	739.947650556986	1	83	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAGTTCAATGCATAATT	NA	False	NA	NA	False	NA	NA	NA	72569730	72655448	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407_72654799_72654933
103905	chr4	-	3972	18	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	1621	-51	intron_retention	FALSE	non_canonical	0	0	junction_1	91.830896188645	32	97	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTCCTGAACTCTGATT	3171	False	NA	NA	False	NA	NA	NA	41121133	41114477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41114545_41114623_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41117493_41117659_41117813_41118089_41118254_41118417_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006
103906	chr17	-	1466	5	NNC	ENSMUSG00000001525.11	novel	2649	4	NA	NA	-10	793	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	4037.90436829551	1	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAATGTCTCCTTTCTC	NA	False	NA	NA	False	NA	NA	NA	36149119	36145703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_36145921_36146133_36146932_36147054_36147166_36147519_36147629_36148888
103907	chr1	-	790	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-161	49	-161	-49	mono-exon	FALSE	NA	NA	NA	NA	NA	2	47	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTACGTATTCACCCTCC	NA	False	NA	NA	False	NA	NA	NA	24653893	24653103	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653900
103909	chr4	+	2875	5	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	6	40725	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	35.9400542570542	1	91	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTACGGAATCTTAATATTT	NA	False	NA	NA	False	NA	NA	NA	146206906	146255729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146206915_146209447_146209546_146250652_146250741_146251596_146251707_146253158
103910	chr4	-	5111	1	Intergenic	novelGene_1885	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	5214	176	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAGAGCGCTCTCGGGCC	NA	False	NA	NA	False	NA	NA	NA	66825835	66820724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_66820700_66825800
103911	chr4	-	2310	11	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	7750	-19	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	484.254736683081	1	68	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATATTTCTGAGGCCA	NA	False	NA	NA	False	NA	NA	NA	137486036	137469062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485925
103912	chr17	+	3335	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	676	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	767.089900569389	1	160	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCCGGGCAGTGGTGGCG	2182	False	NA	NA	False	NA	NA	NA	56612082	56630475	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56612251_56616336_56616580_56617675_56617841_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629026_56629126_56629355
103913	chr11	+	1816	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	4	-73	-4	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	93	41	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103914	chr11	+	3702	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-7	-5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	553.4686983019	1	85	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTGCAGAAGAAAAAAGAGA	NA	False	NA	NA	False	NA	NA	NA	72332195	72342050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332305_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
103915	chr15	+	1489	1	Intergenic	novelGene_3257	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	59	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTGTTTCTCACTTTGCCA	NA	False	NA	NA	False	NA	NA	NA	22703025	22704514	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22703000_22704500
103916	chr10	+	2295	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	1227	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	121.035666863372	1	66	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGACTTTAGTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	75398715	75422027	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_75398908_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
103917	chr11	+	1155	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	335	9	-170	-9	multi-exon	FALSE	canonical	3	35417	junction_1	0	3	66	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGCATATATGGTGTCAC	NA	False	NA	NA	False	NA	NA	NA	62442331	62444030	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442422_62442965
103918	chr10	+	4354	27	NNC	ENSMUSG00000039994.16	novel	4385	29	NA	NA	1	-2	intron_retention	FALSE	non_canonical	0	0	junction_15	126.689738893205	1	131	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAAAAAGAGACTTTTGT	6618	False	NA	NA	False	NA	NA	NA	128067960	128088799	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_128068045_128075702_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128080091_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083114_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085554_128085836_128085980_128086156_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
103919	chr4	+	2340	5	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	-28	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	43.7342828911141	13	58	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216466	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147447267_147447349_147665698_147665826_147667290_147667431_147667838
103920	chr2	+	3664	33	NNC	ENSMUSG00000038685.19	novel	4243	33	NA	NA	-4	12	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	62.6660216819091	1	80	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAACTTCCTCCTAGAC	NA	False	NA	NA	False	NA	NA	NA	180961541	180997822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983346_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716
103921	chr9	+	3009	27	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	17	335	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1218.74926187203	1	146	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAGTCTTTAATGATT	NA	False	NA	NA	False	NA	NA	NA	72569736	72654880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72569896_72577233_72577399_72578522_72578586_72584596_72584676_72584774_72584814_72593342_72593422_72617747_72617822_72619448_72619517_72625499_72625667_72628582_72628701_72628778_72628944_72633692_72633813_72638183_72638256_72638503_72638563_72638667_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
103922	chrX	-	1800	11	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	8	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	568.765584401869	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAAAAACCTGTCCTGTTC	NA	False	NA	NA	False	NA	NA	NA	100128950	100122817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125645_100125812_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100128877
103923	chr15	-	1676	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	18	49	18	-49	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	5	50	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAGTTTTCCATGATG	49	False	NA	NA	False	NA	NA	NA	98832428	98829354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
103924	chr4	+	2155	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	2531	59751	multi-exon	FALSE	non_canonical	0	0	junction_1	67.9411510058521	1	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	147219025	147477942	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147219037_147337800_147337859_147413438_147413566_147415724_147415863_147416444_147416749_147476273_147477323_147477474
103925	chr11	+	1658	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-48	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1509.32757023971	1	50	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5358	False	NA	NA	False	NA	NA	NA	52251913	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267288_52267362_52274676_52274905_52276409_52276561_52278242_52278301_52279258
103926	chr7	-	5079	21	NIC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	11	1203	intron_retention	FALSE	canonical	3	4823	junction_8	530.346716780636	2697	116	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGTTTTTTCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	110682213	110669935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
103927	chr3	+	2336	2	Genic_Genomic	ENSMUSG00000095661.2	novel	2798	1	NA	NA	-50	-6	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	96	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAT	NA	False	NA	NA	False	NA	NA	NA	12920845	12923687	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_12921831_12922336
103928	chr4	+	4609	8	Intergenic	novelGene_2055	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_6	219.099455564297	1	125	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	2337	False	NA	NA	False	NA	NA	NA	146289395	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146289526_146291416_146291510_146435241_146435318_146797295_146797381_146800390_146800518_146802050_146803029_146803117_146805770_146805866
103930	chr15	+	1512	3	Antisense	novelGene_ENSMUSG00000072235.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	79	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGATGGAGATGCACTCA	NA	False	NA	NA	False	NA	NA	NA	98847722	98849550	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_98848898_98849071_98849199_98849340
103931	chr4	+	3419	8	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-268872	63378	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	168.367552257141	1	124	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTAACAAGGTTGACT	NA	False	NA	NA	False	NA	NA	NA	146426545	146805995	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146697966_146698060_146797295_146797381_146800390_146800518_146802050_146802609_146802693_146802927_146803416_146804178_146804602
103932	chr15	+	1796	1	Intergenic	novelGene_3258	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	44	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGATACACCGGCCGG	NA	False	NA	NA	False	NA	NA	NA	22703025	22704821	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22703000_22704800
103933	chr4	-	2302	11	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	49	-21	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	634.382030010309	1	63	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCAAATATTTCTGAGGC	NA	False	NA	NA	False	NA	NA	NA	137523646	137469064	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483055_137485882_137486044_137523552
103934	chr10	-	3332	2	Antisense	novelGene_ENSMUSG00000038587.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	151	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGGTGAGGAACTTCCGTG	NA	False	NA	NA	False	NA	NA	NA	4308932	4305062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_4307938_4308475
103935	chr15	-	2609	6	NNC	ENSMUSG00000022285.18	novel	2122	6	NA	NA	-63	-185	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1613.93749569183	1	117	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACACCCTACCGAGTA	695	False	NA	NA	False	NA	NA	NA	36793826	36771198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_36773022_36775482_36775572_36775659_36775824_36776489_36776614_36790927_36791233_36793722
103936	chr16	+	1871	1	Intergenic	novelGene_3665	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	65	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCGGGTACATGAAACTGCAA	NA	False	NA	NA	False	NA	NA	NA	50814756	50816627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr16_+_50814800_50816600
103937	chrUn_JH584304v1	-	1637	7	Intergenic	novelGene_4697	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_5	338.850999703409	1	81	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCAGGGTTGAGGACAGG	NA	False	NA	NA	False	NA	NA	NA	59725	53872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55249_55511_55702_56985_57136_58563_58836_59591
103938	chr12	-	1499	7	NNC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	TRUE	non_canonical	0	0	junction_6	2909.33266976008	49	40	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111638014_111638199_111638401_111638663
103939	chr18	+	3825	15	NNC	ENSMUSG00000037236.17	novel	3107	15	NA	NA	72	-36	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	472.663517759101	2	99	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAGTTACTGAAGTGAAT	NA	False	NA	NA	False	NA	NA	NA	35695423	35724436	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_35695575_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712369_35714222_35714349_35714647_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
103940	chr5	+	2298	14	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4906	35	intron_retention	FALSE	non_canonical	0	0	junction_3	786.970289583025	1	90	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGACTAGACTTCATTG	NA	False	NA	NA	False	NA	NA	NA	108208633	108255371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241218_108241273_108246984_108247057_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
103941	chrX	+	3542	26	NNC	ENSMUSG00000001924.16	novel	4071	26	NA	NA	44	485	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	712.334914488964	2	126	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGATAATTACCCAGATGTA	NA	False	NA	NA	False	NA	NA	NA	20529180	20548929	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20529365_20534687_20534805_20534930_20534994_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
103942	chr14	-	2462	9	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-5	7	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_8	1786.95934131138	1	108	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCTGTACTTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	36857216	36842773	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855753_36857151
103943	chr4	+	2823	3	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	22	-36	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269	1	129	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTAACTCCAATAAAGCT	948	False	NA	NA	False	NA	NA	NA	145237382	145265722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237472_145261340_145261513_145263160
103944	chr15	+	4052	1	Intergenic	novelGene_3243	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	245	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCCACGTTCTGACTCAG	NA	False	NA	NA	False	NA	NA	NA	22700896	22704948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22700900_22704900
103946	chr4	+	2450	2	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	16941	722	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	95	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147073399	147075934	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147075046_147075130
103947	chr2	-	4912	4	NNC	ENSMUSG00000086563.2	novel	768	3	NA	NA	-38	2821	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	161	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	150548834	150543634	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_150544178_150544339_150544699_150544737_150546831_150546917
103948	chr18	+	1733	11	ISM	ENSMUSG00000025428.16	ENSMUST00000114748.2	2674	12	1820	354	1784	-143	3prime_fragment	FALSE	canonical	3	5078	junction_3	207.718078173278	2	83	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTAGTTTGTGTGGGGGTG	NA	False	NA	NA	False	NA	NA	NA	77863475	77870212	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr18_+_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
103949	chr17	-	2795	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	233	-1	37	1	multi-exon	FALSE	canonical	3	561	junction_9	75.0022221893014	1	113	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTAGCCTTTTGTTTGAAG	2417	False	NA	NA	False	NA	NA	NA	45744430	45702808	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
103951	chr11	+	3969	26	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	-6	-218	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	553.4686983019	1	86	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332196	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332305_72332561_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
103952	chr1	-	6427	43	NNC	ENSMUSG00000026219.15	novel	9632	41	NA	NA	-9481	151	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	353.458163676251	1	239	20	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGTTCTTGTTTAAATT	NA	False	NA	NA	False	NA	NA	NA	84827718	84702146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709839_84714702_84714802_84716394_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84771306_84771392_84772049_84773410_84773537_84792543_84792691_84827643
103953	chr6	+	2276	1	Antisense	novelGene_ENSMUSG00000029840.9_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	97	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCATCCATCTATCACTG	NA	False	NA	NA	False	NA	NA	NA	35486875	35489151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_35486900_35489200
103954	chr18	-	2469	14	NNC	ENSMUSG00000024587.11	novel	2268	14	NA	NA	1016	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2460.22628246809	1	140	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACCAAAACACTTTGCT	NA	False	NA	NA	False	NA	NA	NA	64648481	64632730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_64633719_64634373_64634488_64634806_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638232_64638450_64640838_64640930_64642315_64642387_64643523_64643603_64644683_64644768_64644855_64644949_64645054_64645108_64648392
103955	chr13	+	2721	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	29	514	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	122.245654319489	1	55	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAAGCTTGTGTGTGGACC	NA	False	NA	NA	False	NA	NA	NA	62277775	62321747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62282840_62282944_62317255_62317383_62317567_62317629_62318963_62320655_62321075
103956	chr12	+	5197	2	Intergenic	novelGene_4369	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	205	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTAACTGTCTTGGCTA	NA	False	NA	NA	False	NA	NA	NA	68604995	68610269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605449_68605525
103957	chr1	-	2682	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	21	-69	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	644.891742368438	1	62	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTCTGGGCACAGCTG	NA	False	NA	NA	False	NA	NA	NA	20890463	20873457	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888026_20888130_20890354
103959	chr14	-	2779	10	NNC	ENSMUSG00000041028.17	novel	3188	9	NA	NA	-23	334	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	1725.1813288127	2	126	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCTGTCTTTAGTCTCC	NA	False	NA	NA	False	NA	NA	NA	36857252	36842446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_36843399_36843452_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
103960	chr11	+	2065	1	Intergenic	novelGene_2364	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	97	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57448858	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57448900_57450900
103961	chr2	-	1328	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	189	1025	36	-1017	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	3	10	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGAAGTCGATCTGTC	3821	False	NA	NA	False	NA	NA	NA	154734666	154714354	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
103962	chr4	+	4165	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159945	182221	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	167.29163097991	313	22	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATTTCTCATAAAGTATTT	NA	False	NA	NA	False	NA	NA	NA	146426538	146806073	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146797295_146797381_146800390_146800518_146802050_146802609_146802693_146803320_146803488_146803953_146804037
103963	chr4	+	5393	6	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	100	2591	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	53.6566864426047	2	10	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TCAACAAATGTAAACGCAAA	NA	False	NA	NA	False	NA	NA	NA	147216594	147267627	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147216818_147219028_147219122_147249797_147249844_147260303_147260362_147261203_147261331_147262781
103964	chr11	-	1586	13	Antisense	novelGene_ENSMUSG00000020739.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	43	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCTGCGCTCAGGCCT	2195	False	NA	NA	False	NA	NA	NA	115471879	115455315	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_115455387_115455976_115456072_115457424_115457593_115459192_115459260_115459504_115459547_115460525_115460595_115460821_115460944_115468752_115468891_115468989_115469111_115469312_115469720_115471326_115471414_115471555_115471617_115471741
103966	chr4	+	2976	5	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-244	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	42.6673177033664	1	93	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147637489	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147661528_147661587_147665743_147665826_147667290
103967	chr13	-	2034	1	Intergenic	novelGene_1487	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	91	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTCCGCCAACCCTGTGA	NA	False	NA	NA	False	NA	NA	NA	80853185	80851151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_80851200_80853200
103968	chr2	-	2499	4	NNC	ENSMUSG00000095362.8	novel	1576	4	NA	NA	21	1087	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	134.554408656457	1	77	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAATCTTCATCATTATG	NA	False	NA	NA	False	NA	NA	NA	177476418	177472496	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_177473293_177473353_177474890_177476043_177476105_177476312
103969	chr5	-	3338	3	NNC	ENSMUSG00000051391.10	novel	3520	2	NA	NA	63	22	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.5	1	74	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATAGCGTTTAACTGCTG	NA	False	NA	NA	False	NA	NA	NA	135963341	135937240	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_135938096_135938187_135940506_135963176
103971	chr10	-	2166	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	688.549631501842	25	11	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTGTATTTTGCCCACG	NA	False	NA	NA	False	NA	NA	NA	127358259	127353008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356845_127356976_127358156
103972	chrX	-	5093	1	Intergenic	novelGene_4022	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	251	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTTGCAATTTGCAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116231665	116226572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116226600_116231700
103973	chr17	+	1971	1	Intergenic	novelGene_180	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	106	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGGCGGCCGGGCACGTA	NA	False	NA	NA	False	NA	NA	NA	40153887	40155858	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_40153900_40155900
103974	chr4	+	2456	9	NNC	ENSMUSG00000078502.11	novel	1221	3	NA	NA	-72184	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	19.4919855325208	2	47	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCAACAAGTTTGCTTTG	3117	False	NA	NA	False	NA	NA	NA	145239551	145351905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145239656_145243731_145243846_145299952_145300051_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145349521_145349692_145350323
103977	chr4	+	2323	9	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	628	4	NA	NA	-50755	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	45.9265718293887	1	77	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	147395004	147669649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147395147_147434728_147434839_147447267_147447362_147536170_147536264_147661528_147661587_147665698_147665826_147667290_147667431_147667922_147668409_147668576
103978	chr17	-	3287	15	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	154	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCCGATGTACTGGAGAGA	NA	False	NA	NA	False	NA	NA	NA	56630481	56612096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56612249_56616334_56616578_56617673_56617834_56619053_56619279_56619870_56619967_56620041_56620277_56622212_56622314_56622396_56622505_56622774_56622881_56624003_56624113_56624991_56625155_56625244_56625377_56627153_56627281_56627394_56627579_56629335
103980	chr1	+	1914	12	Antisense	novelGene_ENSMUSG00000104503.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAACTTCCACTGGCTCCC	NA	False	NA	NA	False	NA	NA	NA	84741054	84816993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_84741210_84741558_84741653_84743700_84743797_84743879_84743916_84746303_84746451_84754035_84754102_84755144_84755229_84760547_84760687_84763813_84763916_84771243_84772049_84792543_84792694_84816953
103981	chr11	-	2848	3	Intergenic	novelGene_2306	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	50	1	92	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTTTCTCGTTGGTGATT	NA	False	NA	NA	False	NA	NA	NA	57450887	57445630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446486_57446923_57448725_57450695
103982	chrM	+	1517	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	-139	0	-139	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	88	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	46	False	NA	NA	False	NA	NA	NA	10027	11544	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_10000_11500
103983	chr6	+	1583	9	NNC	ENSMUSG00000036371.7	novel	1667	8	NA	NA	0	75	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2382.90219257421	1	59	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACATAATACTGGTTTTAA	5871	False	NA	NA	False	NA	NA	NA	67243993	67261370	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67244198_67244334_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
103984	chr2	+	3081	13	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	669.124780756342	1	102	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	661	False	NA	NA	False	NA	NA	NA	26279367	26287134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280515_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283329_26283400_26283529_26283593_26285036_26285186_26285441
103985	chr10	+	3153	13	NNC	ENSMUSG00000037608.17	novel	3142	13	NA	NA	1	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	357.771186964828	1	154	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATATTTGTAACTATCAAC	2794	False	NA	NA	False	NA	NA	NA	20188218	20216010	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201518_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215648_20215797
103986	chr10	-	2034	12	NNC	ENSMUSG00000025403.6	novel	2238	12	NA	NA	2	-182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	690.126710128696	1	110	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCAGGGTTCCTATTAC	NA	False	NA	NA	False	NA	NA	NA	127358253	127353189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355373_127355494_127355581_127355839_127356041_127356206_127356287_127356786_127356976_127358156
103987	chr17	+	1370	6	NNC	ENSMUSG00000071172.14	novel	2618	6	NA	NA	65	12	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	768.912634829211	2	52	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGAGCGAACCACTGTTGC	NA	False	NA	NA	False	NA	NA	NA	29251727	29261229	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_29251761_29255214_29255419_29257463_29257599_29259748_29259788_29260180_29260268_29260357
103988	chr19	+	4943	2	Intergenic	novelGene_1227	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	3428	junction_1	0	2	286	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAGCTGAGTAAAGGGGT	1456	False	NA	NA	False	NA	NA	NA	22700114	22705271	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763
103989	chr7	+	1564	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	21	3	-3	-2	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	1	87	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGCTCTGCTCTTTTAT	NA	False	NA	NA	False	NA	NA	NA	46495283	46505048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
103990	chr10	+	2807	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	22	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2524.99874743656	2	64	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTGCTCGCAACTCTGTT	2203	False	NA	NA	False	NA	NA	NA	81012486	81018330	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014060_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017409_81017920
103991	chr8	-	1122	4	FSM	ENSMUSG00000031633.5	ENSMUST00000034049.5	1925	4	261	542	7	-542	multi-exon	FALSE	canonical	3	7531	junction_1	145.363911156334	1	69	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCATTGAGTATTCATT	NA	False	NA	NA	False	NA	NA	NA	46664060	46660375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_-_46660658_46661434_46661576_46662058_46662546_46663848
103992	chr8	+	4356	5	Fusion	ENSMUSG00000110458.2_ENSMUSG00000096401.3	novel	930	5	NA	NA	50	-604	multi-exon	FALSE	non_canonical	0	0	junction_2	476.463206869114	1	180	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGAAACCTTTTTAAGCAG	NA	False	NA	NA	False	NA	NA	NA	20698034	20726662	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_20698090_20711891_20712261_20717197_20717497_20721120_20721241_20723149
103993	chr7	+	3036	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	56	-1	47	1	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	18	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGAGGAGGTCTACAT	2676	False	NA	-61	True	NA	NA	NA	13012807	13045351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
103994	chr18	-	2834	9	NNC	ENSMUSG00000037013.18	novel	1549	10	NA	NA	3291	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	364.894077096354	1	130	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTTCTCATTTGTTTCT	NA	False	NA	NA	False	NA	NA	NA	14812522	14758688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788310_14812439
103995	chr15	+	3795	15	NNC	ENSMUSG00000058655.10	novel	3854	15	NA	NA	42	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	304.9305792525	1	220	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGATGGTTAATGTTG	NA	False	NA	NA	False	NA	NA	NA	101982249	102005600	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_101982399_101990410_101990545_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998525_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
103996	chr9	-	3975	9	FSM	ENSMUSG00000036986.17	ENSMUST00000085673.11	4481	9	7	499	7	-33	multi-exon	FALSE	canonical	3	249	junction_4	53.0057485090061	1	170	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGACCCCCAACCATAAAA	2158	False	NA	NA	False	NA	NA	NA	58157062	58125857	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_58127853_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
103997	chr4	+	2265	7	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-5	256533	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	79.3804132012425	1	38	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146033876	146319724	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146036303_146036376_146058453_146058581_146060726_146060865_146061196_146061937_146062354_146063091_146319412
103998	chr4	+	2422	9	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6_ENSMUSG00000067919.9	novel	3993	5	NA	NA	14	182322	multi-exon	TRUE	non_canonical	0	0	junction_2	60.3592111860319	1	79	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTCTACAAGGTTGCTTT	2297	False	NA	NA	False	NA	NA	NA	147106320	147600513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147106458_147107818_147107913_147219028_147219122_147337796_147337859_147413438_147413566_147415724_147415863_147416444_147417258_147417436_147418071_147600189
103999	chr16	+	1867	11	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	110	junction_7	678.580577381935	2	51	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22930252_22930343_22930566_22930647_22931100_22931212_22931916
104000	chr4	-	1081	2	Intergenic	novelGene_1943	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	58	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAAATTGCCTTAGCTC	NA	False	NA	NA	False	NA	NA	NA	124252215	124246968	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_124247346_124251511
104001	chrX	-	1242	1	FSM	ENSMUSG00000083668.2	ENSMUST00000122244.2	1587	1	1321	-976	1321	976	mono-exon	FALSE	NA	NA	NA	NA	NA	1	53	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTCTGGCCGGGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120244950	120243708	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_120243700_120245000
104002	chr6	+	1970	6	NNC	ENSMUSG00000042079.14	novel	538	5	NA	NA	-2	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2230.77550641027	9	27	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGACTGGCACAGCTTA	3727	False	NA	NA	False	NA	NA	NA	117883748	117902576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668_117900707_117900792_117901986_117902079
104003	chr15	+	1522	10	NNC	ENSMUSG00000046434.17	novel	1737	10	NA	NA	0	-84	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	5810.09122981433	2	83	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACGGTATCAGATAAAATAA	NA	False	NA	NA	False	NA	NA	NA	103148880	103153298	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_103148956_103149506_103149621_103149872_103149933_103150374_103150541_103150632_103150726_103150806_103150904_103151070_103151146_103152051_103152208_103152385_103152456_103152682
104004	chr3	+	2072	8	NNC	ENSMUSG00000027940.19	novel	2230	8	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1179.69340534405	1	68	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	NA	False	NA	NA	NA	89986997	90008203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89987171_89993752_89993887_89994763_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
104005	chr5	-	2448	11	NNC	ENSMUSG00000029111.8	novel	2580	11	NA	NA	-40	-3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_5	181.519723446242	1	117	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACGATTTTCCACTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	34093634	34055262	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058618_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
104006	chr1	-	3412	24	Antisense	novelGene_ENSMUSG00000026553.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	54	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCAACCTCCCATGCCT	NA	False	NA	NA	False	NA	NA	NA	171949892	171928971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171929085_171929779_171929858_171931673_171931825_171932750_171932820_171933683_171933759_171935877_171935962_171937352_171937492_171938054_171938140_171938241_171938379_171939427_171939599_171939694_171939836_171940590_171940782_171940899_171940997_171942311_171942401_171942589_171942728_171944751_171944861_171945577_171945660_171945816_171945889_171946409_171946532_171946748_171946939_171947022_171947133_171947440_171947611_171948821_171948987_171949258
104007	chr2	+	3874	3	Intergenic	novelGene_2630	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	64	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCGCCTCCCCAGCCGGGT	NA	False	NA	NA	False	NA	NA	NA	56510299	56691134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_56511244_56676925_56677021_56688299
104008	chr4	+	3311	10	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159910	182155	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	134.419832457955	1	161	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146426573	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426722_146597241_146597335_146603539_146603615_146616526_146616611_146619877_146620005_146621233_146621782_146802676_146803262_146803348_146803647_146803814_146804101_146804940
104009	chr4	-	2585	3	Antisense	novelGene_ENSMUSG00000078503.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	85	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATGATGCAAAGATGAAAT	7310	False	NA	NA	False	NA	NA	NA	145265512	145257379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145257484_145261383_145261512_145263159
104010	chr7	+	2682	24	Genic_Genomic	ENSMUSG00000109168.2	novel	448	2	NA	NA	1110	19866	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	79	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGCCTAGCTGGCCTGAGC	NA	False	NA	NA	False	NA	NA	NA	28015432	28038164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr7_+_28015605_28015709_28015870_28016211_28016314_28016409_28016541_28016640_28016746_28016818_28016928_28017162_28017247_28018163_28018294_28018383_28018525_28019389_28019541_28019646_28019799_28021423_28021537_28021929_28021993_28023148_28023224_28023320_28023404_28025371_28025627_28028127_28028215_28028675_28028749_28028839_28028913_28029013_28029075_28029991_28030066_28030792_28030957_28037781_28037861_28038119
104011	chr6	+	1179	7	NNC	ENSMUSG00000036371.7	novel	1336	8	NA	NA	-681	-7	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2467.2272167129	1	53	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTACCAGTTTAAAGCTTT	NA	False	NA	-87	True	NA	NA	NA	67248181	67261283	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_67248333_67248870_67249012_67249140_67249204_67249847_67249923_67254744_67254923_67258631_67258806_67260886
104012	chr11	+	1739	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-57	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1169.13077776193	1	50	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5349	False	NA	NA	False	NA	NA	NA	52251904	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267363_52274676_52274905_52276409_52276561_52278242_52278301_52279258
104013	chr1	+	2633	17	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	128	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTCCGGAAACGCGTGACA	NA	False	NA	NA	False	NA	NA	NA	20873519	20890462	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873884_20875044_20875140_20875492_20875563_20876019_20876123_20876963_20877107_20878944_20879096_20879818_20879947_20880281_20880457_20882188_20882396_20882786_20882915_20883178_20883339_20884621_20884731_20884912_20885153_20886875_20887003_20887465_20887685_20888023_20888129_20890353
104014	chr7	+	1475	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	492	6	27	-6	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	1	0	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGATGGCTCTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	46497046	46505044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
104015	chr4	+	3117	5	Intergenic	novelGene_2067	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	43.6520331714343	1	96	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146365090	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146384326_146384431_146388486_146388614_146390758_146392343_146392427
104016	chr9	+	4207	18	NNC	ENSMUSG00000042557.15	novel	5086	21	NA	NA	-813	-235	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	107.551902654978	1	167	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATATGCTTTGATGTGCT	4190	False	NA	NA	False	NA	NA	NA	57001718	57035413	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005545_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025456_57026386_57026472_57032452_57032661_57034431
104017	chr15	-	4049	3	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCTCAAGGTGCTCCAGT	9381	False	NA	NA	False	NA	NA	NA	22704864	22700658	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22701928_22701991_22704588_22704680
104018	chr11	+	1584	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-73	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1390.49211468014	135	41	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCATCCTCTTGTTGTTTT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280219	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267221_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258_52279948_52280174
104019	chr4	+	2650	11	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	1173	3	NA	NA	155	182333	multi-exon	TRUE	non_canonical	0	0	junction_1	55.8225760781424	2	62	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216649	147600524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216819_147217303_147217437_147219028_147219106_147316807_147316901_147327755_147327819_147337800_147337859_147413438_147413566_147415724_147415863_147416444_147416754_147416922_147418018_147600136
104020	chr11	-	1702	7	NNC	ENSMUSG00000025132.14	novel	1867	6	NA	NA	57	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1252.4809601569	9	81	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGGGATTGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	120472393	120468940	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_120469663_120469759_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
104021	chr10	-	2838	11	Fusion	ENSMUSG00000091994.3_ENSMUSG00000035835.15	novel	3063	9	NA	NA	2848	-3075	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	126	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGCGGAGACGCCCGCAC	NA	False	NA	NA	False	NA	NA	NA	79700267	79690460	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr10_-_79690563_79694561_79694669_79694790_79695103_79695183_79695353_79695430_79695544_79695612_79695789_79696656_79696825_79698268_79698375_79698485_79698704_79698811_79698890_79698978
104022	chr15	-	3107	13	NNC	ENSMUSG00000022403.16	novel	3346	12	NA	NA	70	-1	intron_retention	FALSE	non_canonical	0	0	junction_1	946.361130271573	3	136	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTTGACCTTCCCCCATT	NA	False	NA	NA	False	NA	NA	NA	81284174	81247870	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_81248320_81248479_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276516_81283685
104023	chr3	+	2874	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	1	2606	1	200	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	2	81	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACCAACAAATGAAGTAACT	NA	False	NA	NA	False	NA	NA	NA	41510166	41568693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
104025	chr4	+	1891	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-962	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.962960031426	1	101	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAGGAGAGAAACCTTACA	924	False	NA	NA	False	NA	NA	NA	145237358	145264796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145237383_145257381_145257486_145261385_145261513_145263160
104026	chr4	+	2464	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	10	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	111.452273978596	1	82	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216504	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216747_147395068_147395147_147534439_147534569_147536170_147536196_147595297_147595337_147596801_147597165_147599343_147599358_147667908_147668422_147668589
104027	chr15	-	1764	5	ISM	ENSMUSG00000022285.18	ENSMUST00000110362.4	2122	6	2845	3	1422	-3	3prime_fragment	FALSE	canonical	3	3946	junction_3	159.548386077704	1	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTTCAACTACTTTTC	3285	False	NA	NA	False	NA	NA	NA	36791236	36771950	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927
104028	chr11	-	4338	3	Intergenic	novelGene_2321	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	154	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGACCGTTTTCTCGTTGG	NA	False	NA	NA	False	NA	NA	NA	57450691	57445635	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57447320_57447943_57450383_57450476
104029	chr4	+	4040	7	NNC	ENSMUSG00000058186.14	novel	4006	5	NA	NA	-44	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	169.664047131055	1	174	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	145397210	145431014	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145426837_145426909_145427474_145429368_145429451
104030	chr2	-	1194	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-73	-121	-73	121	mono-exon	FALSE	NA	NA	NA	NA	NA	6	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCCTAGGGAGCCCTCC	NA	False	NA	NA	False	NA	NA	NA	28824694	28823500	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823500_28824700
104031	chr13	+	4696	5	Intergenic	novelGene_1337	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	6	129	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAATAAGAAGGGCACTT	NA	False	NA	NA	False	NA	NA	NA	33483255	33569268	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_+_33483963_33484706_33486569_33560816_33562770_33568582_33568589_33569100
104032	chrUn_JH584304v1	-	3606	7	Intergenic	novelGene_4636	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	124	junction_4	312.424213032359	1	160	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGCCCTTTGAAGAGATA	NA	False	NA	NA	False	NA	NA	NA	59695	52241	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55702_56985_57152_57410_57500_58563_58836_59591
104033	chr13	+	1553	6	Antisense	novelGene_ENSMUSG00000065434.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCTCGACCAGGTGGTG	NA	False	NA	NA	False	NA	NA	NA	58539197	58542350	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_58540291_58541009_58541186_58541512_58541590_58541880_58541976_58542124_58542179_58542292
104034	chr11	-	5142	2	Intergenic	novelGene_2341	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	1	255	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGCAATTTGCAACAAGA	NA	False	NA	NA	False	NA	NA	NA	57450829	57445650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57448196_57448232
104035	chr4	+	1494	3	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-128101	-2164	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	240.5	1	39	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGGAGAGAAACCGTACA	6155	False	NA	NA	False	NA	NA	NA	146978205	147143087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146978254_147140108_147140183_147141715
104036	chr4	+	2239	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6	novel	2813	7	NA	NA	16	182328	multi-exon	TRUE	non_canonical	0	0	junction_1	185.593642132483	1	42	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAAGGTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216510	147600519	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147219028_147219122_147316807_147316964_147416344_147417111_147417449_147418091_147600209
104040	chr11	+	3146	20	Antisense	novelGene_ENSMUSG00000020923.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.669890634808308	22	116	8	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCTGGCCGGGCCACCCGG	3022	False	NA	NA	False	NA	NA	NA	102195392	102207261	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_102195835_102197077_102197593_102197681_102197825_102197903_102197977_102198069_102198118_102198774_102198961_102199052_102199146_102199526_102199641_102199726_102199875_102200221_102200378_102200478_102200598_102200972_102201158_102201267_102201402_102201750_102201862_102202204_102202325_102202578_102202632_102204720_102204881_102204966_102205043_102205682_102205868_102207176
104041	chr2	+	2582	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	223	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	5820.02390415177	2	121	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGGACTGGGGTCAT	NA	False	NA	NA	False	NA	NA	NA	29952087	29962579	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960591_29960930
104042	chr5	-	2626	18	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	5	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	195.240141371512	1	70	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTAAAACCATGGCTCACA	NA	False	NA	NA	False	NA	NA	NA	31331840	31314675	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31314745_31315679_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331434_31331575
104043	chr2	-	4172	29	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	124	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGGGGCGGGCCCAGCG	NA	False	NA	NA	False	NA	NA	NA	52000727	51962845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51962879_51963151_51963264_51964256_51964331_51966085_51966186_51966989_51967118_51967202_51967288_51968332_51968533_51971237_51971329_51972674_51972814_51975036_51975189_51978657_51978763_51979528_51979701_51980184_51980295_51982051_51982115_51982289_51982390_51983513_51983602_51984600_51984676_51985836_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993444_51993711_51995419_51995650_51996912_51997013_51997649_51997768_51998449_51998603_51999202_51999288_51999362_51999413_51999920
104044	chr15	-	1562	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	174	7	47	-7	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	2	74	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGTTTTGTTTCTGGAT	205	False	NA	NA	False	NA	NA	NA	98832272	98829312	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
104045	chr5	+	2162	4	Antisense	novelGene_ENSMUSG00000066551.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	104	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAATAAAGCATTAGACGT	NA	False	NA	NA	False	NA	NA	NA	148984040	148987562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_148985722_148986540_148986712_148987105_148987251_148987397
104046	chr11	-	2654	10	Antisense	novelGene_ENSMUSG00000010554.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	91	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGATGCTACGCTCCAAGC	NA	False	NA	NA	False	NA	NA	NA	74709507	74661721	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_74661821_74664359_74664470_74674881_74675088_74678384_74678520_74683026_74683137_74686805_74686950_74694655_74694726_74696077_74696166_74707692_74707869_74707991
104047	chr11	-	5193	3	Intergenic	novelGene_2292	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	274	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGACCCGTTTCTTGTGG	NA	False	NA	NA	False	NA	NA	NA	57450922	57433745	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57433754_57445644_57450415_57450507
104048	chr8	+	4362	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	35	33	7	-33	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	1	216	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAATTTTATTAAAGAGT	5084	False	NA	NA	False	NA	NA	NA	107330017	107396845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
104049	chr11	+	1691	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-55	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1114.85071169866	1	56	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5351	False	NA	NA	False	NA	NA	NA	52251906	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267482_52274737_52274905_52276409_52276561_52278242_52278301_52279258
104050	chr11	+	2510	17	NIC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	27	-10	intron_retention	FALSE	canonical	3	862	junction_15	80.6194523285168	1	76	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAATATAAGACCAATTGT	NA	False	NA	NA	False	NA	NA	NA	115455286	115474722	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115474254_115474546
104051	chr4	+	2512	7	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14_ENSMUSG00000078497.10	novel	2813	7	NA	NA	95	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	46.2301008242706	1	72	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	147216589	147669649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147447267_147447362_147536170_147536294_147665685_147665826_147667290_147667407_147667975
104052	chr4	+	1976	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	-430	multi-exon	TRUE	non_canonical	0	0	junction_1	19.8453202215	1	77	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACACCTTTTACTTGTTCAC	924	False	NA	NA	False	NA	NA	NA	145237358	145351481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237496_145312571_145312707_145314001_145314095_145343687_145343746_145347127_145347255_145348721_145348877_145350126_145350932_145351015
104053	chr17	-	3295	15	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	201	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAGAGAGAGAGAGGGAGA	NA	False	NA	NA	False	NA	NA	NA	56630476	56612082	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56612249_56616334_56616590_56617687_56617837_56619053_56619279_56619870_56619968_56620039_56620251_56622190_56622314_56622396_56622505_56622774_56622881_56624002_56624113_56624991_56625144_56625238_56625382_56627158_56627285_56627403_56627519_56629267
104054	chr19	-	5192	2	Antisense	novelGene_ENSMUSG00000052387.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	232	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTCTTGCAATTTGC	NA	False	NA	NA	False	NA	NA	NA	22705266	22699860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_22700550_22700763
104055	chr11	+	1851	9	NNC	ENSMUSG00000020402.12	novel	891	8	NA	NA	-1603	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1117.5552559046	3	41	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3528	False	NA	NA	False	NA	NA	NA	52250083	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52250210_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
104056	chr4	+	2615	3	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-24	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	50.5	1	114	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147637771	147669652	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637913_147665713_147665826_147667290
104057	chr1	-	3443	26	Antisense	novelGene_ENSMUSG00000026553.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	24	7	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCAACCTCCCATGCCT	NA	False	NA	NA	False	NA	NA	NA	171949891	171928971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_-_171929087_171929779_171929858_171931673_171931825_171932750_171932820_171933683_171933759_171935877_171935962_171937352_171937492_171938054_171938140_171938241_171938379_171939427_171939599_171939694_171939836_171940590_171940782_171940899_171940997_171942311_171942401_171942589_171942713_171944491_171944581_171944751_171944861_171945577_171945660_171945816_171945888_171946406_171946544_171946752_171946939_171947022_171947133_171947440_171947604_171948794_171948991_171949264_171949553_171949624
104058	chr12	+	5202	1	Intergenic	novelGene_4391	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	283	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATCAGAGTAACTGTCT	NA	False	NA	NA	False	NA	NA	NA	68605061	68610263	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605100_68610300
104059	chr9	+	4611	21	NNC	ENSMUSG00000032479.16	novel	5573	19	NA	NA	37	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.558095099533	1	257	13	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGATTCAAACCTAAG	NA	False	NA	NA	False	NA	NA	NA	109760968	109912222	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_109761009_109792428_109792476_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898062_109900093_109900208_109901680_109901778_109907070_109907153_109908848_109908962_109910488_109910679_109910908_109910982_109911172
104060	chr5	+	3215	9	NNC	ENSMUSG00000029267.18	novel	2675	16	NA	NA	301	-216	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	860.54735488525	1	142	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAATTTTAACTGAACACC	NA	False	NA	NA	False	NA	NA	NA	108235162	108256654	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242119_108248634_108248855_108251894_108252021_108252270_108252397_108254453
104061	chrX	+	5143	1	Intergenic	novelGene_4017	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	74	241	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGGTAGAGGACCGTGG	NA	False	NA	NA	False	NA	NA	NA	116226559	116231702	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_116226600_116231700
104062	chr11	-	1666	1	Intergenic	novelGene_2356	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	42	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCAGGCCCCAAAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	57448392	57446726	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446700_57448400
104063	chr14	+	3317	26	NNC	ENSMUSG00000030662.11	novel	4518	26	NA	NA	-17	-565	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	334.29191076064	1	97	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTTTTGTTTAGGTTTCT	1814	False	NA	NA	False	NA	NA	NA	121148618	121184265	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_121148735_121154809_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172449_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
104064	chr9	+	2373	10	ISM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	3345	-1	3345	1	3prime_fragment	FALSE	canonical	3	1827	junction_4	62.1467796609142	187	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCGTTTGCATTCTCT	NA	False	NA	NA	False	NA	NA	NA	54497139	54511946	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
104065	chr13	-	2879	4	Intergenic	novelGene_1434	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	126	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCCACAGCGATCTTGTAG	NA	False	NA	NA	False	NA	NA	NA	66271631	66261284	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66261382_66267461_66267575_66267774_66267837_66269024
104066	chr4	+	3960	4	Intergenic	novelGene_2116	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	103	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAATCAAACAAAGACAACA	NA	False	NA	NA	False	NA	NA	NA	146802049	146806334	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146803177_146803346_146803959_146804037_146805791_146805866
104067	chr1	-	2579	18	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	77	-15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	627.217477997769	2	65	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATACATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	20890407	20873211	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873429_20873731_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
104068	chrUn_JH584304v1	-	2553	7	Intergenic	novelGene_4680	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	26	junction_3	284.965300031815	1	129	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGTGTTGTCCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	59707	53136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrUn_JH584304v1_-_54480_54720_54868_55111_55431_55511_55702_56985_57152_58563_58836_59591
104070	chr2	+	3608	1	Genic_Genomic	ENSMUSG00000078878.10	novel	NA	NA	NA	NA	8672	2399	mono-exon	FALSE	NA	NA	NA	NA	NA	1	169	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGATGTGTTTGCGTGT	NA	False	NA	NA	False	NA	NA	NA	176412397	176416005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_176412400_176416000
104071	chr3	-	2680	10	Intergenic	novelGene_3111	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	149	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTGGGCATCACGTCAC	NA	False	NA	NA	False	NA	NA	NA	41568703	41510136	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_-_41510257_41535631_41535715_41543377_41543456_41546115_41546273_41548198_41548241_41551074_41551223_41554429_41554664_41558871_41559426_41564236_41564355_41567557
104072	chr4	-	3442	1	Intergenic	novelGene_1872	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	72	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAATCTTCATTCTCATCC	NA	False	NA	NA	False	NA	NA	NA	66641283	66637841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_66637800_66641300
104073	chrX	+	1183	4	NNC	ENSMUSG00000016319.4	novel	1240	4	NA	NA	32	-10	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5605.09585605416	1	54	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAAACCAGTTTTGTTCG	NA	False	NA	NA	False	NA	NA	NA	36059338	36062450	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_36059495_36060495_36060983_36061400_36061530_36062039
104074	chr5	-	2911	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	223	1418	-10	21	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	8	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAACTCCTTAAATCCCT	NA	False	NA	NA	False	NA	NA	NA	31337265	31314766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
104076	chr4	+	2904	7	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-7	-11	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	41.285254295235	2	85	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCAACAAGTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	147637726	147669644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147646898_147646979_147647371_147647416_147658372_147658457_147661528_147661587_147665698_147665826_147667290
104077	chr14	-	4926	21	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-46	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	73.4309880091505	1	152	10	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655283	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645955_54646506_54649041_54649104_54654045_54654228_54654833
104078	chrX	+	3937	4	Intergenic	novelGene_3972	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	105	2	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAAGACTGATTCATGTA	NA	False	NA	NA	False	NA	NA	NA	88344539	88350999	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_88344627_88344703_88345010_88345080_88345201_88347575
104079	chr16	+	1765	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	314	129	0	-112	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	4	26	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACTGGACCCTGTTGCTA	6053	False	NA	NA	False	NA	NA	NA	22926507	22932568	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
104080	chr8	-	3261	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21251	-695	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	1	111	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTGTGATTTGTACTCA	NA	False	NA	NA	False	NA	NA	NA	81585874	81491763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
104081	chr1	-	2823	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	154	54	102	-16	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	1	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTACATGTGGACTTC	NA	False	NA	NA	False	NA	NA	NA	20890382	20873245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
104082	chr2	-	1160	1	Antisense	novelGene_ENSMUSG00000054766.14_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	44	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAAACAAGAGAAAGTAGA	NA	False	NA	NA	False	NA	NA	NA	29962576	29961416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_29961400_29962600
104083	chr17	+	1861	7	Antisense	novelGene_ENSMUSG00000052397.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	52	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCATTTCCTTGTTATA	NA	False	NA	NA	False	NA	NA	NA	7005679	7022048	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_7006870_7007031_7007280_7008360_7008458_7008822_7008876_7020376_7020527_7021384_7021469_7022009
104084	chr5	+	2116	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	-62	-192	-1	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	111	17	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	285	False	NA	NA	False	NA	NA	NA	77099152	77115352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
104085	chr5	+	2171	12	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	35	intron_retention	FALSE	non_canonical	0	0	junction_2	701.032980443446	1	79	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGACTAGACTTCATTG	NA	False	NA	NA	False	NA	NA	NA	108208601	108255371	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228888_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108254485
104086	chr6	+	2002	3	FSM	ENSMUSG00000042079.14	ENSMUST00000180020.8	2280	3	272	6	263	-4	multi-exon	FALSE	canonical	3	4878	junction_1	99	2	65	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGACTGGCACAGCTTA	NA	False	NA	NA	False	NA	NA	NA	117894526	117902576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117894560_117896059_117896121_117900668
104087	chr16	+	2005	12	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_11	564.272309855287	2	60	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931212_22931916
104088	chr17	+	3335	17	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	46	-16	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	719.152528588338	1	97	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTGGCCGGGCAGTGG	545	False	NA	NA	False	NA	NA	NA	56610445	56630470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612264_56616450_56616580_56617675_56617828_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
104089	chr5	+	2030	14	Antisense	novelGene_ENSMUSG00000035325.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	130	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAAGCCCTGAGACTGCA	NA	False	NA	NA	False	NA	NA	NA	100511686	100540322	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_100511804_100513590_100513853_100516157_100516210_100521236_100521575_100523066_100523201_100526696_100526868_100529018_100529192_100530619_100530769_100531656_100531778_100532978_100533164_100533986_100534057_100536389_100536476_100538588_100538687_100540248
104090	chr15	-	1553	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	186	4	59	-4	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	1	57	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTGTTTCTGGATACT	217	False	NA	NA	False	NA	NA	NA	98832260	98829309	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
104091	chr6	+	1526	5	NNC	ENSMUSG00000042079.14	novel	2147	4	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2095.02124094244	1	54	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3719	False	NA	NA	False	NA	NA	NA	117883740	117902580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668_117901271_117901906
104092	chr5	+	2030	16	NNC	ENSMUSG00000005672.13	novel	5241	21	NA	NA	4745	468	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	435.170750651077	1	65	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGAGTTAATGGGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	75775978	75813984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75776150_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801484_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879
104093	chr2	-	2189	10	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	38	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	206.579611294215	1	111	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAACTCCCCTTTGCTCTC	NA	False	NA	NA	False	NA	NA	NA	165740898	165669110	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_165669638_165669851_165670610_165676809_165676888_165680700_165680820_165681917_165682011_165684683_165684788_165687932_165688160_165693919_165694069_165717624_165717696_165740835
104094	chr4	+	2082	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	7	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	111.452273978596	2	78	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216501	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578899_147595209_147595337_147596801_147597092_147599270_147599358_147668160_147668422_147668589_147668772_147669034
104095	chr7	+	1224	6	NNC	ENSMUSG00000063229.16	novel	1588	8	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	3313.94234107958	1	56	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	NA	False	NA	NA	NA	46495259	46505050	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_46495342_46497019_46497170_46498396_46498519_46501322_46501419_46503406_46503531_46504400
104096	chr7	+	2506	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	210	6	-2	2	multi-exon	FALSE	canonical	3	986	junction_1	0	1	134	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGACTTGCTGTGAGTAT	285	False	NA	NA	False	NA	NA	NA	44465721	44480230	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_44465908_44477910
104097	chr11	+	1676	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	157	267	65	-267	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATCATGCCTCCATCCTT	3148	False	NA	NA	False	NA	NA	NA	75623851	75656404	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
104098	chrX	-	2876	20	NNC	ENSMUSG00000031095.16	novel	3354	20	NA	NA	476	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	312.21577878252	1	118	11	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCATTTAAAGATACTTAAA	8768	False	NA	NA	False	NA	NA	NA	37652926	37622146	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638545_37638709_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539
104099	chr13	-	2598	16	NNC	ENSMUSG00000021546.19	novel	2704	16	NA	NA	-3	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2747.37364202412	2	79	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCCATGATGTTAGTTAT	5148	False	NA	NA	False	NA	NA	NA	58549933	58539066	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540152_58540221_58540291_58541009_58541180_58541505_58541589_58541873_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
104100	chr4	+	1705	6	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	10	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	40.4	4	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216504	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147578832_147578909_147665698_147665826_147667290_147667445_147668191_147668359_147668611
104101	chr3	+	3536	18	NNC	ENSMUSG00000068823.11	novel	3849	19	NA	NA	-179	-8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	4186.45685886549	1	159	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAATAATAAAAAAGTTG	NA	False	NA	-51	True	NA	NA	NA	102936138	102965094	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954499_102956936_102957038_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
104102	chr4	+	3416	7	Intergenic	novelGene_2099	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_4	170.268415548314	1	137	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146428062	146806002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146428160_146797298_146797381_146800390_146800518_146802050_146802609_146802693_146803008_146803679_146803953_146804037
104103	chr8	+	2887	14	NNC	ENSMUSG00000031826.21	novel	3274	14	NA	NA	8	-302	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	666.809971777221	1	180	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAAACACATTTTAACGAT	8854	False	NA	NA	False	NA	NA	NA	120637579	120683992	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674443_120674550_120675156_120675213_120675417_120675512_120677128_120677198_120678659_120678842_120679918_120680090_120681544_120681673_120682936_120683003_120683321
104104	chr7	-	3729	21	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	14	-30	intron_retention	FALSE	non_canonical	0	0	junction_1	1796.0313499491	2	133	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCTATCAATAAACATTG	NA	False	NA	NA	False	NA	NA	NA	110682210	110671168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671956_110673031_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677583_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
104105	chr11	+	1753	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	62	285	18	-285	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	3	26	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAATTAAAAATGCCAAATA	3053	False	NA	NA	False	NA	NA	NA	75623756	75656386	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
104106	chr5	-	3283	19	NNC	ENSMUSG00000106864.4	novel	4200	21	NA	NA	19	170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	211.087016168834	1	153	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTCATATTGAGCATATTG	NA	False	NA	NA	False	NA	NA	NA	31337442	31314617	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31325015_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331192_31331434_31331575_31331840_31337227
104107	chr4	+	2377	9	Genic_Genomic	ENSMUSG00000070605.5_ENSMUSG00000081460.2	novel	4550	4	NA	NA	18	-1905	multi-exon	TRUE	non_canonical	0	0	junction_2	39.7012279407073	2	109	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTCACATTATAGGAT	NA	False	NA	NA	False	NA	NA	NA	146200146	146552844	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr4_+_146200273_146291416_146291510_146365126_146365259_146368121_146368209_146388492_146388614_146390758_146390897_146391646_146392386_146392722_146393460_146552640
104108	chr18	-	3773	23	NNC	ENSMUSG00000024613.17	novel	4595	26	NA	NA	33	1006	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	469.297683901916	1	176	14	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTCGCCGATCCAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	60981957	60948062	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_60948125_60949072_60949566_60951115_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962087_60962188_60964584_60964753_60964845_60965058_60965552_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971928_60972643_60972706_60976297_60976444_60978882_60978939_60981822
104109	chr12	-	2333	5	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7551	junction_3	346.913894215841	7	101	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111637782_111637858_111638014_111638199_111638408_111638663
104110	chr10	+	2270	11	Antisense	novelGene_ENSMUSG00000037012.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	95	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCTCGAACCTGCAGGA	NA	False	NA	NA	False	NA	NA	NA	62105010	62128236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62105423_62105482_62105843_62110214_62110386_62111461_62111643_62116810_62116912_62117591_62117685_62120056_62120173_62120475_62120632_62122129_62122430_62125936_62126172_62128091
104111	chrX	-	5137	1	Intergenic	novelGene_4025	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	238	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCTTGAATAAAAATCCTC	NA	False	NA	NA	False	NA	NA	NA	116231727	116226590	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116226600_116231700
104112	chr8	-	3422	21	Intergenic	novelGene_1749	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	7	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGCGGAGACCGGGTC	NA	False	NA	NA	False	NA	NA	NA	111782202	111760767	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111760895_111763539_111763704_111766761_111766951_111767226_111767374_111768108_111768299_111768869_111769016_111769292_111769439_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774543_111774656_111776328_111776536_111776974_111777162_111779044_111779152_111779820_111779935_111780518_111780641_111780756_111780842_111781138_111781253_111781648
104113	chr11	-	3498	4	Intergenic	novelGene_2339	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	41.4835978296108	2	167	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTTGCAACAAGACCGTT	NA	False	NA	NA	False	NA	NA	NA	57450909	57445645	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_-_57446472_57447336_57447735_57448541_57450383_57450476
104114	chr9	+	1518	10	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	7	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6159.02867722773	1	68	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGCTTTGTTCCACATGG	NA	False	NA	NA	False	NA	NA	NA	64080681	64085949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080720_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
104115	chr5	-	2802	11	Antisense	novelGene_ENSMUSG00000037313.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	105	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCCGGAACGTCGTCCGCT	NA	False	NA	NA	False	NA	NA	NA	33829515	33815938	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_33816083_33818845_33818989_33821164_33821240_33821604_33822200_33824380_33824510_33825304_33825396_33825475_33825579_33826004_33826082_33826160_33826990_33828745_33828855_33829008
104116	chr1	+	2797	17	Antisense	novelGene_ENSMUSG00000041859.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	72	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCCGCAGCTCCACATCA	NA	False	NA	NA	False	NA	NA	NA	20873277	20890389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_20873878_20875039_20875132_20875486_20875563_20876019_20876123_20876963_20877107_20878944_20879095_20879818_20879947_20880281_20880457_20882188_20882396_20882786_20882918_20883182_20883338_20884621_20884731_20884911_20885151_20886871_20887003_20887465_20887676_20888016_20888129_20890353
104117	chr15	-	3178	2	Antisense	novelGene_ENSMUSG00000040420.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	2	169	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATTGCTGCCATAATCTG	9819	False	NA	NA	False	NA	NA	NA	22705071	22701800	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_22704588_22704680
104118	chr15	+	2543	7	Antisense	novelGene_ENSMUSG00000022285.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	116	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGACTCTGTCCCTGATCTG	81	False	NA	NA	False	NA	NA	NA	36771198	36793804	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_36771360_36771408_36773025_36775484_36775578_36775658_36775823_36776488_36776614_36790930_36791235_36793724
104119	chrX	-	3885	2	Intergenic	novelGene_4026	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	198	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGACCATGGGCCCGAGAGT	NA	False	NA	NA	False	NA	NA	NA	116231727	116226610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_116227704_116228935
104120	chr4	-	3278	9	Antisense	novelGene_ENSMUSG00000093975.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	169	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCCTTCTGGACCCGCC	NA	False	NA	NA	False	NA	NA	NA	147600524	147216463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147216814_147217299_147217437_147219029_147219125_147316811_147316942_147341244_147341379_147342849_147343004_147343326_147343627_147416424_147418015_147600136
104121	chr4	+	3013	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000070605.5	novel	314	3	NA	NA	-2	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	74.8809523496689	1	142	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146033879	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146033938_146206970_146207223_146209452_146209546_146223583_146223724_146225390_146225469_146289389_146289513_146291411_146291510_146312913_146312972_146388486_146388614_146390758_146390897_146391814_146393342_146552527
104122	chr16	+	1941	10	NNC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	0	intron_retention	FALSE	canonical	1	11	junction_7	814.711537225839	1	69	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6053	False	NA	NA	False	NA	NA	NA	22926507	22932697	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927337_22927384_22927468_22927602_22928734_22929094_22929329_22929474_22929875_22930014_22930252_22930339_22930566_22930647_22931100_22931212_22931916
104123	chr8	-	2045	14	Intergenic	novelGene_1752	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	86	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGGAAGAAGGAATGAC	NA	False	NA	NA	False	NA	NA	NA	111777058	111763539	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_-_111763704_111766761_111766951_111767226_111767372_111768107_111768303_111768902_111769017_111769299_111769438_111769862_111769971_111770271_111770424_111771507_111771633_111772156_111772303_111773561_111773742_111774544_111774660_111776343_111776545_111776985
104125	chr17	+	3394	16	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	-27	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	578.135378225166	1	114	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGTGGCGCACGTCTT	472	False	NA	NA	False	NA	NA	NA	56610372	56630483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627412_56627543_56629020_56629126_56629355
104126	chr1	+	2037	1	FSM	ENSMUSG00000044757.8	ENSMUST00000054664.8	1248	1	-162	-627	-162	627	mono-exon	FALSE	NA	NA	NA	NA	NA	2	75	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTGCTAACCAAATCCAA	NA	False	NA	NA	False	NA	NA	NA	96952243	96954280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_+_96952200_96954300
104127	chr11	+	1716	8	NNC	ENSMUSG00000020402.12	novel	891	8	NA	NA	34	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1189.34784050516	1	95	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3573	False	NA	NA	False	NA	NA	NA	52265123	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52265196_52265744_52265795_52267228_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
104128	chr13	+	3169	6	NNC	ENSMUSG00000074867.5	novel	2571	4	NA	NA	36	519	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	121.522014466515	1	115	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	NA	False	NA	NA	NA	62277782	62321752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_62277843_62278062_62278154_62295299_62295341_62317255_62317383_62317567_62317629_62318963
104129	chr4	+	3295	12	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	-28	-1902	multi-exon	FALSE	non_canonical	0	0	junction_2	37.9148676653717	1	109	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACATTATAGGATAAC	NA	False	NA	NA	False	NA	NA	NA	146206872	146552847	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146206973_146207051_146207223_146207708_146207846_146291416_146291510_146293441_146293573_146368115_146368239_146384347_146384431_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393401_146552575
104130	chr1	+	2223	1	Intergenic	novelGene_482	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	112	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCGTTTCTTGTGGGTGA	NA	False	NA	NA	False	NA	NA	NA	171140046	171142269	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_171140000_171142300
104131	chrX	-	4937	17	NNC	ENSMUSG00000085396.8	novel	5555	20	NA	NA	3	890	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	44.1657036058524	9	141	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGTAATTCCATCGGAAA	NA	False	NA	NA	False	NA	NA	NA	49724135	49646124	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_49647262_49651556_49651832_49653689_49653845_49656416_49656571_49658153_49659169_49661884_49662022_49662100_49662229_49666747_49666902_49669215_49669827_49670279_49670390_49672996_49673230_49684333_49684493_49715313_49715387_49716083_49716187_49719767_49719873_49720649_49720724_49723821
104132	chr2	+	3146	1	Genic_Genomic	ENSMUSG00000094475.8	novel	NA	NA	NA	NA	2498	2788	mono-exon	FALSE	NA	NA	NA	NA	NA	1	174	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175445295	175448441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_175445300_175448400
104133	chr15	-	1801	2	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	-103401	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	4	44	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTTTCTGGATACTTT	1553	False	NA	NA	False	NA	NA	NA	98935847	98829307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830285_98935023
104134	chr4	+	2424	7	NNC	ENSMUSG00000065999.14	novel	628	4	NA	NA	-242729	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.6404776212465	1	98	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395004	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147534439_147534577_147639766_147639860_147641568_147641651_147665805_147665826_147667290_147667446_147667855
104135	chr6	-	2921	16	NNC	ENSMUSG00000002870.9	novel	3371	16	NA	NA	3	-257	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	902.097053167415	1	126	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGCTGTTTTGGCATGA	NA	False	NA	NA	False	NA	NA	NA	88875656	88860712	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870159_88870377_88870496_88874268_88874499_88875626
104136	chrM	-	2311	1	FSM	ENSMUSG00000064368.1	ENSMUST00000082419.1	519	1	-75	-1717	-75	1717	mono-exon	FALSE	NA	NA	NA	NA	NA	329	4	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATGTGTTTAATTAGGT	16	True	NA	-6	True	NA	NA	NA	14145	11834	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_-_11800_14100
104137	chr2	+	778	3	Genic_Genomic	ENSMUSG00000082536.2	novel	1365	1	NA	NA	-68	262	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	6	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCAAAAATCTGTCACAGA	NA	False	NA	NA	False	NA	NA	NA	40445695	40447390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_40446115_40446843_40447134_40447321
104138	chr4	+	3099	11	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	2498	5	NA	NA	-1	-51	multi-exon	TRUE	non_canonical	0	0	junction_1	39.0819651501815	1	120	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCTTTCCTATTGTCCT	925	False	NA	NA	False	NA	NA	NA	145237359	145351860	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237383_145239544_145239640_145311773_145311905_145314001_145314095_145315865_145315970_145319498_145319572_145343687_145343746_145347127_145347255_145348721_145348871_145349277_145350378_145350714
104139	chr18	-	2731	25	NNC	ENSMUSG00000024493.10	novel	3980	32	NA	NA	7	3043	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	623.807991069546	1	104	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTGGACACTGCTTGGA	NA	False	NA	NA	False	NA	NA	NA	42395149	42351591	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369643_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376098_42376841_42376955_42377813_42377974_42379006_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
104140	chr11	+	3566	1	Intergenic	novelGene_2359	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	133	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAACCCACGATCTCGTAA	NA	False	NA	NA	False	NA	NA	NA	57446920	57450486	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57446900_57450500
104141	chr16	+	1671	9	NNC	ENSMUSG00000022884.17	novel	2203	10	NA	NA	14	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	732.740393574013	1	60	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTATATAGGTGGTCTG	6891	False	NA	NA	False	NA	NA	NA	22927345	22932690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930030_22930273_22930343_22930566_22930647_22931916
104142	chr1	-	2563	15	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	2929	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	910.2631375552	1	89	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTACATGTGGACTTCATG	NA	False	NA	NA	False	NA	NA	NA	20887555	20873242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876026_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880277_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466
104143	chr3	+	2218	3	Genic_Genomic	ENSMUSG00000095661.2	novel	2798	1	NA	NA	-40	-25	multi-exon	TRUE	non_canonical	0	0	junction_1	0	3	90	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATTCAACAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	12920855	12923668	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr3_+_12921827_12922252_12922623_12922791
104144	chr15	+	4554	2	Antisense	novelGene_ENSMUSG00000060429.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	254	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAACTGTCTTGGCTACAT	NA	False	NA	NA	False	NA	NA	NA	55735057	55740288	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_55738290_55738966
104145	chr4	+	2310	6	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-30	-11	multi-exon	FALSE	non_canonical	0	0	junction_2	39.154054707016	1	88	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCAACAAGTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	147209682	147669644	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147449058_147449108_147665698_147665826_147667290_147667440_147667855
104146	chr5	+	2335	15	NNC	ENSMUSG00000029267.18	novel	4060	15	NA	NA	28	80	intron_retention	FALSE	canonical	0	0	junction_3	695.242378085308	1	71	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGTTAGATACTTT	NA	False	NA	NA	False	NA	NA	NA	108213650	108255109	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235082_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
104147	chr10	+	3687	4	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	131	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGCTGGGGACTGAATC	NA	False	NA	NA	False	NA	NA	NA	62669378	62715326	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62669410_62673955_62676160_62700588_62700636_62713921
104148	chr13	+	3064	6	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-9	1321	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	96.6527806118375	1	133	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGACTTAGCTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	66261284	66271971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66270241_66270323_66270801_66270876
104149	chr16	+	1777	12	NNC	ENSMUSG00000022884.17	novel	1965	12	NA	NA	-2	8	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	792.620885271512	1	103	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTTATATAGGTGGTC	6060	False	NA	NA	False	NA	NA	NA	22926514	22932688	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr16_+_22926571_22927334_22927384_22927468_22927602_22927869_22928010_22928734_22928896_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916_22932319_22932414
104150	chr8	+	3632	21	NNC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-4	-2102	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	751.072373343608	1	137	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAATACTTGGTGATGTCA	NA	False	NA	NA	False	NA	NA	NA	111760529	111782194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_+_111760876_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
104151	chr11	+	1264	2	Antisense	novelGene_ENSMUSG00000048076.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	57	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGATACTGGCCAAAGACCT	NA	False	NA	NA	False	NA	NA	NA	59102257	59104331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_59103450_59104259
104152	chr5	-	3728	15	NNC	ENSMUSG00000063406.12	novel	1045	3	NA	NA	23750	45628	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	127	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGACTATTACAAGAAGTT	NA	False	NA	NA	False	NA	NA	NA	108256646	108208603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_108208728_108228688_108228887_108229000_108229085_108234863_108234958_108235158_108235261_108235804_108235956_108239926_108240020_108241200_108241259_108241985_108242113_108246982_108247047_108248674_108248857_108251891_108251991_108252130_108252184_108252290_108252396_108254452
104153	chr2	+	4284	5	FSM	ENSMUSG00000078878.10	ENSMUST00000108981.9	1646	5	14	-2652	-13	2652	multi-exon	FALSE	canonical	3	21	junction_2	64.6006965906715	2	211	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTAAAGAAACATCCTTCT	NA	False	NA	NA	False	NA	NA	NA	176400134	176416258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081_176411143_176412300
104154	chr4	+	3589	9	Intergenic	novelGene_2096	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_3	157.691500642869	2	120	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146426572	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426715_146428065_146428160_146603534_146603615_146797295_146797381_146800390_146800518_146802050_146802583_146803007_146803881_146803936_146804243_146804657
104155	chr2	+	2621	6	NNC	ENSMUSG00000094786.2	novel	1209	4	NA	NA	16	1069	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	83.2706430862642	1	125	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTCTTGGTCATGATGT	NA	False	NA	NA	False	NA	NA	NA	177190023	177202625	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246_177200833_177200920
104156	chr17	+	3382	17	NNC	ENSMUSG00000001228.15	novel	3391	17	NA	NA	-6	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	767.363984283208	1	167	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTGGTGGCGCACGTCTT	1441	False	NA	NA	False	NA	NA	NA	56611341	56630483	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617828_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622879_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
104157	chr18	-	2847	11	NNC	ENSMUSG00000037013.18	novel	3098	11	NA	NA	-3	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	409.555173328332	1	109	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTTCTCATTTGTTT	NA	False	NA	NA	False	NA	NA	NA	14815816	14758690	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_-_14760369_14766599_14766734_14769573_14769676_14770448_14770542_14773313_14773419_14774012_14774146_14784079_14784302_14788083_14788226_14803373_14803451_14812452_14812521_14815723
104158	chr4	+	4504	7	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-69572	182156	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	162.822415191794	1	214	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	1926	False	NA	NA	False	NA	NA	NA	146516911	146806008	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146516986_146586514_146586602_146597241_146597335_146603534_146603615_146797295_146797381_146800390_146800518_146802050
104159	chr5	-	2279	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	269	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	458	1	32	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466809	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125463671_125463734_125465329_125466760
104160	chr13	-	2596	20	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	516.061958100321	1	114	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGGTACTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	6698761	6631214	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6634575_6634737_6636515_6636664_6638513_6638690_6647894_6648048_6648774_6648847_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653494_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669594_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
104162	chr4	+	2402	6	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	29	-31	multi-exon	FALSE	non_canonical	0	0	junction_1	40.4	1	70	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAACTCCAATAAAGCTGAA	NA	False	NA	NA	False	NA	NA	NA	147216523	147669624	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216737_147576921_147576992_147578832_147578899_147665698_147665826_147667290_147667431_147667838
104163	chr4	-	2186	7	Intergenic	novelGene_2138	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	108	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCGAGAATGCTGGAATG	NA	False	NA	NA	False	NA	NA	NA	147669655	147390095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_147390117_147395011_147395149_147413496_147413566_147415725_147415878_147597034_147597092_147599102_147599376_147668178
104164	chr6	+	2235	10	Antisense	novelGene_ENSMUSG00002076505.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	93	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTACTGCAGTCCTTAAAA	NA	False	NA	NA	False	NA	NA	NA	144944878	144993076	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144946031_144950076_144950164_144953366_144953482_144955774_144955864_144961176_144961318_144964917_144965084_144978509_144978632_144980272_144980378_144985160_144985364_144993021
104165	chr7	-	2330	23	Antisense	novelGene_ENSMUSG00000056394.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	31	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTTCACAGCTCAGAACC	NA	False	NA	NA	False	NA	NA	NA	13043128	13019280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_-_13019316_13020480_13020608_13022581_13022684_13023317_13023419_13025109_13025247_13025384_13025457_13026063_13026146_13026384_13026438_13029303_13029479_13030151_13030321_13030645_13030720_13032659_13032753_13032963_13033063_13034183_13034269_13034851_13034971_13035307_13035404_13037107_13037220_13037725_13037796_13039833_13039979_13040135_13040215_13041437_13041600_13042396_13042444_13043032
104166	chr11	+	3744	22	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	1021	-221	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	947.947387481556	1	162	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATATGACGCCAATCTCTG	NA	False	NA	NA	False	NA	NA	NA	72333223	72342373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72333314_72333524_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335516_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337111_72337949_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
104167	chr4	+	3404	5	NNC	ENSMUSG00000078497.10	novel	1250	5	NA	NA	-2	2149	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	221.659085083378	1	134	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	2375	False	NA	NA	False	NA	NA	NA	147445765	147477610	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147445910_147447267_147447362_147469673_147469759_147472778_147472906_147474656
104168	chr4	+	3428	6	NNC	ENSMUSG00000078497.10	novel	572	5	NA	NA	-9337	2147	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	217.215100764196	1	99	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAAGGTTGACTTGGCT	NA	False	NA	NA	False	NA	NA	NA	147436422	147477608	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147436501_147436636_147436729_147447267_147447362_147469673_147469759_147472778_147472906_147474656
104169	chrX	-	3247	26	Antisense	novelGene_ENSMUSG00000001924.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.979795897113271	1	67	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCGGAACAAAACCCTGAG	NA	False	NA	NA	False	NA	NA	NA	20548765	20529151	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_20529234_20534708_20534805_20534930_20534988_20535085_20535255_20535364_20535500_20536440_20536548_20536780_20536871_20536976_20537109_20537589_20537693_20537928_20538073_20538206_20538384_20538479_20538588_20538673_20538752_20539049_20539209_20541822_20541991_20542115_20542309_20544431_20544498_20544824_20545024_20545628_20545696_20545828_20546020_20547019_20547109_20547344_20547438_20547559_20547751_20548138_20548237_20548342_20548449_20548616
104170	chr4	+	2677	4	Fusion	ENSMUSG00000084350.2_ENSMUSG00000078502.11	novel	3595	4	NA	NA	9	-4	multi-exon	FALSE	non_canonical	0	0	junction_2	38.9643711898732	1	92	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATTTAATTCAAATGAGC	NA	False	NA	NA	False	NA	NA	NA	145311781	145556508	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145312083_145510590_145510660_145552750_145552806_145554256
104171	chr4	+	2451	4	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-23	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	36.7695526217005	4	30	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033844	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034010_146054375_146054480_146058453_146058552_146061110
104173	chr13	-	2929	4	Antisense	novelGene_ENSMUSG00000113295.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	112	2	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTCAGTGCATTCTAGA	NA	False	NA	NA	False	NA	NA	NA	61894929	61889678	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_-_61889696_61891740_61892790_61892963_61893314_61893416
104174	chrX	-	1252	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	-180	-73	180	mono-exon	FALSE	NA	NA	NA	NA	NA	3	68	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCCACAAAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79238531	79237279	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237300_79238500
104175	chr11	+	1725	8	NNC	ENSMUSG00000020402.12	novel	891	8	NA	NA	34	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1191.61281549034	1	53	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3573	False	NA	NA	False	NA	NA	NA	52265123	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274903_52276409_52276561_52278242_52278301_52279258
104176	chr18	+	1755	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	-1	-7	-1	7	mono-exon	FALSE	NA	NA	NA	NA	NA	26208	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48179712	48181467	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181500
104177	chr12	-	1429	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	41	2	-14	-2	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	924	43	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
104179	chr16	+	2631	10	ISM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	821	-11	16	-5	intron_retention	FALSE	canonical	3	675	junction_9	455.970028254782	1	101	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTATATAGGTGGTCTGG	6893	False	NA	NA	False	NA	NA	NA	22927347	22932691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr16_+_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
104180	chr4	+	2202	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	14	-1876	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0169885798519	1	59	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTATTTCCCATTTATTG	NA	False	NA	NA	False	NA	NA	NA	146206914	146552873	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207223_146291416_146291510_146365127_146365220_146388486_146388614_146390758_146390897_146391646_146392386_146392722_146392888_146393152_146393429_146552609
104181	chr14	-	4367	17	Antisense	novelGene_ENSMUSG00000021767.20_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	206	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTGACTTCCTCCAAGAAG	NA	False	NA	NA	False	NA	NA	NA	21719604	21531501	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr14_-_21531622_21566693_21567565_21659819_21659928_21668958_21669075_21669263_21669366_21672020_21672156_21676786_21676909_21678881_21678995_21681387_21681530_21684541_21684707_21687616_21687709_21707945_21708026_21710809_21711041_21711493_21711656_21712224_21712533_21714522_21714817_21718398
104183	chr17	+	599	5	NNC	ENSMUSG00000037805.16	novel	901	5	NA	NA	215	-17	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3548.23121428128	3	34	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTCCAATAAACCTCAC	NA	False	NA	NA	False	NA	NA	NA	28547835	28549974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_28547860_28547940_28548023_28548347_28548497_28549498_28549672_28549803
104184	chr4	+	2804	4	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-3	-15	multi-exon	FALSE	canonical	3	16	junction_2	247.817585242766	1	168	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGATTCAACAAATTTGC	4107	False	NA	NA	False	NA	NA	NA	147314737	147418176	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147316807_147316901_147409230_147409335_147415724
104185	chr4	-	2774	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	40	63799	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.705728832981	2	105	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCTTTGGTTGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	146993944	146912353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913219_146913891_146914389_146976181_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146991966_146992072_146993882
104186	chr4	-	3038	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	9	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.201572947855	4	138	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994038	146912352	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913241_146913577_146914284_146976159_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
104189	chr4	+	2345	8	Fusion	ENSMUSG00000078498.6_ENSMUSG00000067916.10_ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	3993	5	NA	NA	1951	182330	multi-exon	FALSE	non_canonical	0	0	junction_1	175.565790912625	1	53	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	147058409	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147058498_147106326_147106458_147219028_147219098_147413438_147413566_147415724_147415863_147416528_147416845_147416926_147418091_147600209
104190	chr4	+	2264	4	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	14	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	70.528166162337	1	97	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033928	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146054375_146054480_146060726_146062389_146062784
104191	chr4	-	3327	6	Intergenic	novelGene_2077	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	205	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTGAAAAGGCGGGACT	NA	False	NA	NA	False	NA	NA	NA	146393544	146370017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146370159_146373508_146373594_146375375_146375457_146384325_146384429_146388484_146388615_146390757
104193	chr16	+	1453	6	Antisense	novelGene_ENSMUSG00000022858.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	42	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGCCAAGACAACAGTTG	5637	False	NA	NA	False	NA	NA	NA	22064648	22071511	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr16_+_22065615_22065937_22066016_22067187_22067248_22067801_22067886_22069615_22069726_22071356
104194	chr13	-	2796	24	NNC	ENSMUSG00000021196.15	novel	4145	22	NA	NA	0	-78	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	543.838044389614	1	85	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTCAGTTTTCTACTGT	NA	False	NA	NA	False	NA	NA	NA	6698761	6631295	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6642518_6642633_6646019_6646099_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653110_6653185_6653430_6653494_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
104195	chr3	+	1490	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	-9	7	-9	-7	mono-exon	FALSE	NA	NA	NA	NA	NA	1	95	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTTCAAAAAAAAAAAAAAA	5431	False	NA	NA	False	NA	NA	NA	54388849	54390339	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_54388800_54390300
104196	chr3	-	3876	26	NNC	ENSMUSG00000042520.17	novel	3975	28	NA	NA	399	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	382.303577801726	2	182	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACCTCTACCTTCAGC	8122	False	NA	NA	False	NA	NA	NA	89955207	89907605	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_-_89908299_89909585_89909781_89910551_89910620_89915562_89915669_89916416_89916635_89919984_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926645_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932533_89933895_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076
104198	chr3	+	1626	1	Intergenic	novelGene_3154	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	73	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGAAGAAAACTTCCCAAA	NA	False	NA	NA	False	NA	NA	NA	94175706	94177332	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr3_+_94175700_94177300
104199	chr15	+	1929	3	Intergenic	novelGene_3256	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	4	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCATGTCAAATGTTGAA	NA	False	NA	NA	False	NA	NA	NA	22703016	22705470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22704559_22704650_22704932_22705364
104200	chr4	-	2725	1	Antisense	novelGene_ENSMUSG00000078503.10_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	154	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAGTACCACTCGTGTCT	7678	False	NA	NA	False	NA	NA	NA	145265144	145262419	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145262400_145265100
104201	chr11	+	1653	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	84	363	-8	-363	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	64	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCCGCAGGTACAGATCT	3075	False	NA	NA	False	NA	NA	NA	75623778	75656308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
104202	chr9	+	1249	8	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	1434	-196	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	6693.29342075533	2	48	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCAAGTAGAGACCGCATA	NA	False	NA	NA	False	NA	NA	NA	64082108	64085752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084750_64085115_64085300_64085504
104203	chr17	+	2914	10	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-54	2287	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_5	45.8478428212062	1	123	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCGCAAACCTCGGGCCAC	9336	False	NA	NA	False	NA	NA	NA	36152513	36163798	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152572_36155323_36155463_36156730_36157112_36157193_36157270_36158214_36159558_36159680_36159750_36159898_36159992_36161186_36161406_36162004_36162049_36163306
104204	chr6	-	3418	12	NNC	ENSMUSG00000040669.15	novel	3839	14	NA	NA	5	-58	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	319.319110318935	1	142	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTCCCAACTGTTCCCAC	9601	False	NA	NA	False	NA	NA	NA	122313969	122294866	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122298845_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816
104205	chr12	-	1506	7	NIC	ENSMUSG00000001270.10	novel	1472	8	NA	NA	-14	-2	intron_retention	FALSE	canonical	3	7551	junction_5	335.592345297419	337	45	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638731	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111638014_111638199_111638408_111638663
104206	chr5	+	1183	5	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	64	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGACAGTGGCTGCGCGT	NA	False	NA	NA	False	NA	NA	NA	142888888	142892470	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889595_142890483_142890540_142890993_142891213_142891309_142891448_142892406
104208	chr5	+	1911	1	Antisense	novelGene_ENSMUSG00000100801.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	64	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATAGCTTGGTGTGGTGC	NA	False	NA	NA	False	NA	NA	NA	5831518	5833429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_5831500_5833400
104209	chr5	+	1103	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	6	-107	6	107	mono-exon	FALSE	NA	NA	NA	NA	NA	2	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	96009578	96010681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009600_96010700
104210	chr1	+	3101	11	NNC	ENSMUSG00000026380.11	novel	9269	15	NA	NA	25827	-5569	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	553.595736977806	1	125	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAGAAAAGTACCTCCA	NA	False	NA	NA	False	NA	NA	NA	118581502	118607329	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_118581553_118584097_118584251_118586737_118586829_118589739_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
104211	chr11	-	1179	10	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	11	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9964.62117248373	2	46	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	NA	False	NA	NA	NA	33113061	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107067_33109933_33109996_33110319_33110441_33110823_33110922_33111105_33111226_33111547_33111628_33112921
104213	chr11	+	1379	3	NNC	ENSMUSG00000020849.14	novel	738	4	NA	NA	-12	-29	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5640	1	72	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCATTAAAGTACAACAGTCA	3071	False	NA	NA	False	NA	NA	NA	75623774	75656642	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642915_75655614
104214	chr17	+	2375	5	NNC	ENSMUSG00000096696.2	novel	2667	4	NA	NA	440	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.552213578731	1	106	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284814	17309890	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_17284884_17305782_17305910_17306151_17306199_17307505_17308931_17309183
104215	chr19	+	1457	3	ISM	ENSMUSG00000025066.11	ENSMUST00000099353.6	1657	4	945	63	423	-63	3prime_fragment	FALSE	canonical	3	1831	junction_1	22	1	62	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTCTCCAATTTGT	NA	False	NA	NA	False	NA	NA	NA	47721065	47723964	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr19_+_47721428_47721957_47722351_47723262
104216	chr11	-	1578	7	Antisense	novelGene_ENSMUSG00000020402.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	16274	57	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAAAGCCTAAAGAAGGAA	-6	True	NA	NA	False	NA	NA	NA	52280220	52265752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_52265801_52267225_52267320_52267487_52267529_52274679_52274907_52276407_52276554_52278239_52278298_52279256
104217	chr2	+	2435	8	NNC	ENSMUSG00000054766.14	novel	2824	8	NA	NA	359	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7385.3558326942	1	142	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAAAGATTTTTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	29952223	29962569	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29952279_29958280_29958339_29958971_29959119_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
104218	chr9	-	569	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	-40	-57	-40	57	mono-exon	FALSE	NA	NA	NA	NA	NA	5	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGACTGGGGGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	115870172	115869603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_-_115869600_115870200
104219	chr14	+	3844	23	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-4	-6	intron_retention	FALSE	canonical	0	0	junction_17	118.656563936806	1	118	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGCCCTGCTGGCCTCCT	NA	False	NA	NA	False	NA	NA	NA	32043971	32070102	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065274_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068811_32069462
104221	chr4	-	1638	2	NNC	ENSMUSG00000042367.13	novel	1880	2	NA	NA	202	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	85	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTCGGTTCTTCCCTC	NA	False	NA	NA	False	NA	NA	NA	127224435	127219032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_127220548_127224312
104223	chr4	-	4993	1	Intergenic	novelGene_1887	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	7	155	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATGAAAGACCCACAAT	NA	False	NA	NA	False	NA	NA	NA	66825831	66820838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_66820800_66825800
104224	chr4	+	1576	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	15933	-1078	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	233.962960031426	1	67	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCCTATCTTAATATTCA	2632	False	NA	NA	False	NA	NA	NA	145257386	145264680	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145257486_145261385_145261513_145263160_145263265_145263434
104226	chr11	+	1817	9	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	34	-4	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	1454.45357007365	1	49	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3573	False	NA	NA	False	NA	NA	NA	52265123	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52277208_52277299_52278242_52278301_52279258
104227	chr1	+	3886	13	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	-8	-18	intron_retention	FALSE	canonical	3	17	junction_10	96.9926615208021	1	143	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATTGGATGTTTATTA	NA	False	NA	NA	False	NA	NA	NA	132405164	132433375	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422713_132423943_132424014_132424595_132424767_132425667_132425746_132431501
104228	chrX	+	4139	2	Intergenic	novelGene_3934	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	87	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAGAGAACTTCAGACCAA	NA	False	NA	NA	False	NA	NA	NA	58832996	58978140	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_+_58836751_58977755
104229	chr17	-	1540	10	Antisense	novelGene_ENSMUSG00000098269.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGAGAGGGGACAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	35472651	35462086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_35462353_35463079_35463238_35463429_35463523_35465910_35466093_35467921_35468046_35470222_35470352_35471719_35471829_35471935_35472090_35472208_35472331_35472448
104230	chr6	+	1180	1	Antisense	novelGene_ENSMUSG00000003153.11_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	92756	22	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCAGAAAAGAAAAAGCGAG	8810	False	NA	NA	False	NA	NA	NA	122704783	122705963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122704800_122706000
104232	chr12	+	4571	1	Intergenic	novelGene_4388	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	223	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTACTATTGAAAGGGCAAG	NA	False	NA	NA	False	NA	NA	NA	68605044	68609615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_+_68605000_68609600
104233	chr4	-	1106	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-65	-39	-65	39	mono-exon	FALSE	NA	NA	NA	NA	NA	12	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGGCCCTATCCCAA	NA	False	NA	NA	False	NA	NA	NA	91740971	91739865	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739900_91741000
104234	chr18	-	663	1	Antisense	novelGene_ENSMUSG00000024234.8_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	38	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCATCGGCTTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	4397035	4396372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr18_-_4396400_4397000
104235	chr10	-	3440	18	NNC	ENSMUSG00000037012.19	novel	3851	22	NA	NA	2846	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	155.537220592434	1	126	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGAGTGGTGTTTCCTTG	NA	False	NA	NA	False	NA	NA	NA	62151326	62104882	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105836_62107367_62107455_62107504_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140640_62151164
104236	chr10	-	2470	15	NNC	ENSMUSG00000037012.19	novel	4278	18	NA	NA	368	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	161.341632720695	1	135	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCGGAGTGGTGTTTCCT	NA	False	NA	NA	False	NA	NA	NA	62175953	62104884	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_62105174_62105343_62105542_62117640_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
104237	chr13	-	1042	3	Fusion	ENSMUSG00000114353.2_ENSMUSG00000074830.5	novel	1562	3	NA	NA	2337	343	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	33	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATCAATGTGGTAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	66940751	66818491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr13_-_66819110_66819194_66819431_66940563
104238	chr11	-	1777	6	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	13544	52	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGACTTCCGCCTGCGCACG	NA	False	NA	NA	False	NA	NA	NA	75656395	75623741	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623917_75642705_75642906_75646398_75646507_75647642_75647847_75650114_75650253_75655443
104239	chr1	-	2952	17	NNC	ENSMUSG00000041859.11	novel	3031	17	NA	NA	25	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	646.175563894984	3	85	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTCTGTGTGTA	NA	False	NA	NA	False	NA	NA	NA	20890459	20873197	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880277_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
104240	chr17	+	1367	9	Antisense	novelGene_ENSMUSG00000023932.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	58	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACTGTAATAGATCAGGAC	3601	False	NA	NA	False	NA	NA	NA	45703185	45728012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45703231_45703918_45704134_45715522_45715718_45718725_45718963_45719266_45719342_45721698_45721867_45722754_45722887_45726506_45726673_45727878
104241	chr12	+	1431	8	Antisense	novelGene_ENSMUSG00000001270.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	156	53	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGACGGCTGCTCGCTGCTC	7744	False	NA	NA	False	NA	NA	NA	111635796	111638729	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_111636181_111636261_111636455_111636600_111636720_111637305_111637479_111637648_111637770_111637847_111638013_111638198_111638408_111638662
104242	chr2	+	384	3	Antisense	novelGene_ENSMUSG00000074656.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	15	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTTAATTTAAAAACACCA	NA	False	NA	NA	False	NA	NA	NA	154726264	154730280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_154726366_154729622_154729728_154730102
104244	chr5	-	2334	2	FSM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	260	24	260	-12	multi-exon	FALSE	canonical	3	916	junction_1	0	1	75	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCTTGCATTCCAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	125466818	125463052	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_125465329_125466760
104245	chr4	-	3219	10	Antisense	novelGene_ENSMUSG00000070605.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	185	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAGAAAGATGAAACCGC	NA	False	NA	NA	False	NA	NA	NA	146552848	146206912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146207226_146209457_146209548_146368115_146368208_146370027_146370163_146371792_146371926_146388484_146388613_146390757_146390908_146391321_146392663_146392833_146393418_146552595
104246	chr4	+	2135	8	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-2	256527	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	74.534473601831	1	82	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCAACAAGTTTGCTTT	NA	False	NA	NA	False	NA	NA	NA	146033879	146319718	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034002_146036319_146036376_146058453_146058581_146060726_146060865_146061364_146062053_146062389_146063078_146255349_146255509_146319561
104247	chr4	+	2955	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	109	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	41.9404339510215	1	79	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146207050	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207267_146209420_146209546_146211490_146211604_146384376_146384431_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393401_146552586
104249	chr8	-	2414	17	NNC	ENSMUSG00000036550.17	novel	8152	48	NA	NA	18475	-1175	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	407.740951578021	1	102	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACAACGGCCTTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	96515534	96482768	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_96482859_96483939_96484121_96486726_96486879_96487130_96487254_96487950_96488071_96489617_96489859_96491084_96491213_96491607_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500104_96500198_96500268_96501257_96501357_96501906_96502015_96515257
104251	chr8	-	3177	9	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	30487	-76	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	188.992352689203	1	124	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGCTTCTTTTTAAACAAAAA	NA	False	NA	NA	False	NA	NA	NA	81527026	81491144	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr8_-_81492968_81493019_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515445_81526826
104252	chr9	-	928	5	NNC	ENSMUSG00000037742.15	novel	1794	8	NA	NA	-3	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5921.45051380994	1	39	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8133	False	NA	-47	True	NA	NA	NA	78387973	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_78386141_78386239_78386349_78387378_78387431_78387522_78387703_78387792
104254	chr10	-	2102	12	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	0	-182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	593.719721281024	1	71	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCCAGGGTTCCTATTAC	NA	False	NA	NA	False	NA	NA	NA	127358255	127353189	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355786_127356041_127356206_127356287_127356786_127356985_127358156
104255	chr10	-	1989	1	Intergenic	novelGene_3483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	89	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTCACAGGGTTGGTGGA	NA	False	NA	NA	False	NA	NA	NA	74555735	74553746	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_-_74553700_74555700
104256	chr5	-	4408	27	Fusion	ENSMUSG00000107283.4_ENSMUSG00000106864.4	novel	2328	9	NA	NA	0	-10	multi-exon	FALSE	non_canonical	0	0	junction_8	218.616443590788	2	90	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAAATCAAACAAGAAT	NA	False	NA	NA	False	NA	NA	NA	31337253	31298016	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534_31311619_31315483_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31330726_31330856_31331111_31331437_31331588_31331840_31337223
104257	chr4	+	3567	8	Intergenic	novelGene_2091	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_5	163.964655225647	1	118	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGACTTGGCTGTTTTC	NA	False	NA	NA	False	NA	NA	NA	146426558	146806006	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426715_146428065_146428160_146797295_146797381_146800390_146800518_146802050_146802832_146803007_146803866_146803953_146804201_146804787
104258	chr10	-	1889	16	NNC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	17	1	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_10	615.967192488547	30	4	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTAATGTCTTACTGAT	NA	False	NA	NA	False	NA	NA	NA	116899647	116886909	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897196_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
104259	chr17	-	3456	17	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	163	10	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCGCGAAAACTCAGGGCGT	NA	False	NA	NA	False	NA	NA	NA	56630463	56610402	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56610560_56612083_56612242_56616334_56616578_56617673_56617837_56619053_56619267_56619862_56619960_56620034_56620251_56622190_56622311_56622391_56622505_56622774_56622842_56623982_56624113_56624991_56625149_56625244_56625382_56627158_56627281_56627394_56627539_56629016_56629124_56629351
104261	chr2	-	3987	28	Antisense	novelGene_ENSMUSG00000036202.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	128	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTCGGCCGCCACCCTGC	NA	False	NA	NA	False	NA	NA	NA	52000747	51963164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_-_51963258_51964256_51964340_51966098_51966186_51966988_51967120_51967204_51967298_51968340_51968533_51971237_51971332_51972678_51972830_51975044_51975189_51978657_51978776_51980183_51980292_51982042_51982115_51982289_51982393_51983516_51983576_51984601_51984676_51985835_51986012_51987925_51988036_51988367_51988519_51988864_51988965_51993447_51993710_51994557_51994599_51995444_51995650_51996912_51997013_51997649_51997768_51998449_51998613_51999201_51999284_51999362_51999413_51999920
104263	chrX	-	5147	1	Intergenic	novelGene_3950	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	123	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACTGTGGCGCCCCGAGT	NA	False	NA	NA	False	NA	NA	NA	63982204	63977057	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_63977100_63982200
104264	chr5	-	1735	3	NNC	ENSMUSG00000008348.10	novel	2618	2	NA	NA	269	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	1	66	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCATTTGTGTTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	125466809	125463034	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_125463043_125463198_125464877_125466760
104266	chr11	+	1560	7	NNC	ENSMUSG00000020402.12	novel	891	8	NA	NA	667	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1583.55146743009	1	85	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	7	False	NA	NA	False	NA	NA	NA	52265756	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52265795_52267223_52267371_52274638_52274905_52276409_52276561_52278249_52278301_52279258_52279393_52279447
104267	chr4	+	4063	8	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-159918	182152	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	75.9019238281634	1	112	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGTTGACTTGGCTGTTT	NA	False	NA	NA	False	NA	NA	NA	146426565	146806004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146426715_146597241_146597335_146797295_146797381_146800390_146800518_146802054_146802590_146802676_146803281_146803449_146803918_146804002
104268	chr1	+	4337	2	Intergenic	novelGene_409	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	56	104	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTCCCAGGGCGTCCCCC	NA	False	NA	NA	False	NA	NA	NA	90550810	90555299	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_90553288_90553439
104270	chr4	+	2293	8	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	7	0	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3199076928666	1	70	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147216501	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217441_147447267_147447362_147637752_147637884_147639766_147639810_147665698_147665826_147667290_147667443_147668191
104271	chr4	+	2479	9	Fusion	ENSMUSG00000078498.6_ENSMUSG00000067919.9	novel	3993	5	NA	NA	14	182330	multi-exon	FALSE	non_canonical	0	0	junction_1	167.376073558917	1	86	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	2297	False	NA	NA	False	NA	NA	NA	147106320	147600521	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147106458_147217303_147217441_147316807_147316901_147395015_147395119_147413438_147413566_147415724_147415861_147416312_147417035_147417378_147418091_147600209
104272	chr7	+	1116	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-19	135	-19	-135	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCTATCCCAACTCGGC	NA	False	NA	NA	False	NA	NA	NA	51396375	51397491	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397500
104273	chr5	-	1576	6	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	203	-8	intron_retention	FALSE	non_canonical	0	0	junction_1	1654.6796668842	1	45	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAACAGCTTGTGGCTCT	3864	False	NA	NA	False	NA	NA	NA	142891373	142888877	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889256_142889414_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
104274	chr17	+	2110	13	NNC	ENSMUSG00000001228.15	novel	3586	17	NA	NA	676	389	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	612.351813139763	1	75	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTTGTTTTTGTTTTT	2182	False	NA	NA	False	NA	NA	NA	56612082	56629728	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625323_56629401
104275	chr5	-	1732	5	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	82	-51	intron_retention	FALSE	non_canonical	0	0	junction_2	1794.56150632961	1	84	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTACACTGACTTGAGACCA	9904	False	NA	NA	False	NA	NA	NA	142891494	142888920	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890018_142890193_142890538_142890991_142891232_142891318
104277	chr9	-	952	5	Fusion	ENSMUSG00000076138.3_ENSMUSG00000037742.15	novel	859	5	NA	NA	0	-9	multi-exon	FALSE	non_canonical	0	0	junction_1	6552.40579386686	49	20	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATCTGTGTTGGTCAAT	8136	False	NA	-44	True	NA	NA	NA	78387970	78385739	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr9_-_78385969_78386977_78387057_78387133_78387431_78387522_78387694_78387794
104280	chr18	+	1717	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	2	28	2	-28	mono-exon	FALSE	NA	NA	NA	NA	NA	3	93	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCGCAGAAGTCCACCAAAA	NA	False	NA	NA	False	NA	NA	NA	48179715	48181432	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_48179700_48181400
104282	chr15	-	1434	9	ISM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	4233	150	-3043	-150	3prime_fragment	FALSE	canonical	3	5476	junction_6	289.589121644788	1	44	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGGAGAATCTGAAGAAT	4082	False	NA	NA	False	NA	NA	NA	31597717	31591095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556
104283	chr6	-	1686	11	NNC	ENSMUSG00000029752.13	novel	2001	12	NA	NA	-26	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2578.19154641388	11	73	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGTTGTGGGTACCAGT	1685	False	NA	NA	False	NA	NA	NA	7693136	7675164	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677323_7680169_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
104284	chr9	-	4047	24	NIC	ENSMUSG00000032480.18	novel	4623	23	NA	NA	5	-19	combination_of_known_junctions	FALSE	canonical	1	1	junction_23	185.427590461473	1	201	10	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTATATTTATCCCTTGT	NA	False	NA	NA	False	NA	NA	NA	109946448	109913409	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942159_109944103_109944230_109944558_109944651_109945745_109945824_109946425
104285	chr4	-	5292	5	Fusion	ENSMUSG00000066000.13_ENSMUSG00000062518.8	novel	2594	5	NA	NA	-87	-16	multi-exon	FALSE	non_canonical	0	0	junction_2	184.307318085854	2	158	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTGAATGATTCACCAATT	NA	False	NA	NA	False	NA	NA	NA	147787097	147696411	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147698506_147699736_147700229_147700561_147702956_147725368_147725463_147786879
104286	chr3	+	3061	25	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	164.098034511555	1	140	8	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGTGGTGTCTGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	54600262	54636184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54604340_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512_54619671_54620596_54620624_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624759_54625067_54625654_54625829_54629915_54630062_54633390_54633497_54634989_54635118_54635764
104287	chrX	-	3922	1	Intergenic	novelGene_4039	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	112	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTAAATCTAGGTCTAGG	NA	False	NA	NA	False	NA	NA	NA	119300069	119296147	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chrX_-_119296100_119300100
104288	chr10	-	2415	12	NNC	ENSMUSG00000025364.14	novel	2483	12	NA	NA	-8	-19	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	592.112746132214	1	141	9	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAATTTGGATTTGCT	8737	False	NA	NA	False	NA	NA	NA	128401811	128393655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_-_128394841_128394930_128394985_128395098_128395210_128395293_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
104289	chr1	-	1034	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	30	3430	30	3235	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	1	65	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATAACCCTTGATACTT	NA	False	NA	NA	False	NA	NA	NA	13730740	13696983	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
104292	chr16	-	1635	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	35	1814	0	-1802	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAAGACTGGTATTTGTTT	8675	False	NA	NA	False	NA	NA	NA	33787373	33776965	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
104293	chr5	+	3644	8	NNC	ENSMUSG00000029247.18	novel	2482	9	NA	NA	-10	1	intron_retention	FALSE	canonical	3	450	junction_1	1022.37706211694	4	103	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTCTCGCTGTGTGGTCT	746	False	NA	NA	False	NA	NA	NA	77099613	77115353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_77099683_77104395_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77114253_77114494
104294	chr10	+	3069	2	Genic_Genomic	ENSMUSG00000112523.2	novel	871	1	NA	NA	-2	3153	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	128	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTTGTTGCCCAGGTAA	NA	False	NA	NA	False	NA	NA	NA	106018879	106022905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr10_+_106021522_106022478
104295	chr3	+	2758	25	NNC	ENSMUSG00000027751.14	novel	2751	27	NA	NA	1	-17	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_12	191.073647813844	1	94	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACAGCTGTTTTGCAGT	NA	False	NA	NA	False	NA	NA	NA	54600244	54636166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_54600281_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616650_54617821_54617894_54619512_54619671_54621153_54621187_54622108_54622218_54622574_54622678_54622954_54623111_54624996_54625067_54625654_54625813_54627826_54627883_54629983_54630062_54633390_54633497_54634989_54635118_54635764
104296	chr1	+	1983	12	Antisense	novelGene_ENSMUSG00000025980.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	13	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCGTCCCGTGGGTGAAAGG	NA	False	NA	NA	False	NA	NA	NA	55116993	55127242	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_55117387_55117763_55117864_55118211_55118388_55119258_55119505_55120229_55120334_55120820_55120990_55121218_55121310_55122224_55122320_55122881_55122965_55123689_55123944_55125923_55126104_55127150
104298	chr15	-	1390	9	NNC	ENSMUSG00000060036.15	novel	1781	8	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	12893.0154874403	5	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTCACACTGGTTTTCCC	4341	False	NA	NA	False	NA	NA	NA	79966784	79962001	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964020_79964574_79964754_79965096_79965404_79965815_79965985_79966590
104299	chr13	+	2638	4	Antisense	novelGene_ENSMUSG00000074832.12_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	143	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACAGCCACAGCAATCTT	NA	False	NA	NA	False	NA	NA	NA	66577926	66589166	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr13_+_66580284_66581469_66581544_66581745_66581866_66589079
104300	chr15	+	1414	8	NNC	ENSMUSG00000009585.19	novel	1217	8	NA	NA	55	-103	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	250.043343181513	2	42	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTACATAGTGGGCTCC	8353	False	NA	NA	False	NA	NA	NA	79776710	79792004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_79776718_79782011_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
104301	chr9	+	711	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	73	225	3	-3	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	2	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAATCTCATGTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	120400582	120403495	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
104302	chr3	+	518	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	-29	-64	-29	64	mono-exon	FALSE	NA	NA	NA	NA	NA	11	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGGTGGAATAGGATTG	7635	False	NA	NA	False	NA	NA	NA	37768859	37769377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_37768900_37769400
104303	chr11	-	1259	3	Antisense	novelGene_ENSMUSG00000020849.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	53	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAAAAATGGCGGCGCCTC	NA	False	NA	NA	False	NA	NA	NA	75656453	75623766	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_75623918_75642705_75642937_75655576
104304	chr9	-	3573	14	NNC	ENSMUSG00000050471.18	novel	1662	7	NA	NA	18435	5747	intron_retention	FALSE	non_canonical	0	0	junction_1	0	1	102	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGCGCCAAGCGCGGG	NA	False	NA	NA	False	NA	NA	NA	35128306	35122513	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_-_35123807_35124014_35124177_35124422_35124590_35124680_35124829_35125038_35125128_35125235_35125351_35125481_35125570_35125855_35126027_35126111_35126327_35126761_35126924_35127003_35127109_35127235_35127459_35127623_35128045_35128092
104305	chr18	+	4659	23	NNC	ENSMUSG00000038299.17	novel	4455	23	NA	NA	0	324	intron_retention	FALSE	non_canonical	0	0	junction_1	250.842650129453	6	57	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGGTAGTCTGTAACTTA	8992	False	NA	NA	False	NA	NA	NA	32970305	33000971	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_32970658_32972484_32972513_32974095_32974195_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985644_32985992_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
104307	chr1	+	1734	1	Antisense	novelGene_ENSMUSG00000101111.2_AS_novelGene_ENSMUSG00000101939.2_AS_novelGene_ENSMUSG00000100862.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	24	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGTTGTGGCATATCACTA	NA	False	NA	NA	False	NA	NA	NA	24652146	24653880	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_24652100_24653900
104308	chr1	-	631	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	-20	67	-20	-67	mono-exon	FALSE	NA	NA	NA	NA	NA	1	29	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAGTAGCATTAATTCAAG	NA	False	NA	NA	False	NA	NA	NA	24653752	24653121	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr1_-_24653100_24653800
104309	chr12	+	1520	7	NNC	ENSMUSG00000001175.17	novel	4115	6	NA	NA	-2762	809	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1392.18023458012	6	5	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAACTTAAAAGTGGTGTTA	6403	False	NA	NA	False	NA	NA	NA	100162931	100173563	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_100162939_100165785_100165976_100168651_100168683_100169833_100169978_100171871_100171979_100172356_100172493_100172658
104310	chr5	+	5064	21	NNC	ENSMUSG00000005672.13	novel	5241	21	NA	NA	91	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	293.837416780096	2	196	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAATTCTAATAAAAATGTAA	857	False	NA	NA	False	NA	NA	NA	75735705	75817348	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802091_75806501_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
104311	chr17	-	1980	8	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	429	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4942.88917413238	2	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTATACAGTCCTGCT	NA	False	NA	NA	False	NA	NA	NA	45882079	45878711	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879051_45879154_45879489_45879802_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881699_45881943
104312	chr5	+	1817	5	Antisense	novelGene_ENSMUSG00000029580.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAGACACAAAAGAAGGC	NA	False	NA	NA	False	NA	NA	NA	142888871	142891449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_142889697_142889821_142890001_142890095_142890540_142890993_142891234_142891320
104313	chr15	-	1194	2	Antisense	novelGene_ENSMUSG00000078300.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	40	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTATGGTCTTAATCCAT	NA	False	NA	NA	False	NA	NA	NA	12576165	12574900	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_-_12576032_12576102
104315	chr11	+	1178	1	FSM	ENSMUSG00000069939.9	ENSMUST00000119551.2	1002	1	5	-181	5	181	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAATAAATAAATAAATAA	NA	False	NA	NA	False	NA	NA	NA	26736637	26737815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_26736600_26737800
104316	chr15	-	2228	1	Intergenic	novelGene_3238	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	107	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGACAGGTAAAAAAAAAATT	1888	False	NA	NA	False	NA	NA	NA	22703121	22700893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22700900_22703100
104317	chr15	+	1999	1	Intergenic	novelGene_3263	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	98	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTAGCTGGGTAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	22703096	22705095	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_+_22703100_22705100
104318	chr11	+	1538	6	ISM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	2195	-870	2195	-4	3prime_fragment	FALSE	canonical	3	3141	junction_3	168.597034374867	2	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	1535	False	NA	NA	False	NA	NA	NA	52267284	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr11_+_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
104319	chr7	-	3413	21	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	5	-30	intron_retention	FALSE	non_canonical	0	0	junction_1	2074.9903132304	1	112	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCTATCAATAAACATTG	NA	False	NA	NA	False	NA	NA	NA	110682219	110671168	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671914_110673416_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676707_110676861_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681987
104320	chr10	+	3035	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	36	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	1968.26742963354	1	84	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	2217	False	NA	NA	False	NA	NA	NA	81012500	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81014999_81015098_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
104321	chr10	+	1002	7	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	50	-58	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	2504.20549054763	4	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCCGGCTGTGGGAAT	2231	False	NA	NA	False	NA	NA	NA	81012514	81018274	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015271_81018200
104323	chr17	-	1798	13	Fusion	ENSMUSG00000023832.15_ENSMUSG00000062480.13	novel	2144	10	NA	NA	-3160	7309	multi-exon	FALSE	non_canonical	0	0	junction_1	0	47	74	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTAACGGCCACCACGGCG	NA	False	NA	NA	False	NA	NA	NA	13162647	13135390	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr17_-_13135515_13136682_13136771_13136929_13137057_13138235_13138334_13138699_13138813_13139162_13139339_13139621_13139752_13140987_13141163_13141493_13141619_13142104_13142297_13142415_13142573_13143138_13143411_13162626
104324	chr6	+	733	2	Genic_Genomic	ENSMUSG00000101878.2	novel	387	1	NA	NA	-106	375	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	33	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAATAAC	NA	False	NA	NA	False	NA	NA	NA	116150591	116151459	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_+_116150865_116150999
104326	chr5	-	356	2	ISM	ENSMUSG00000029580.15	ENSMUST00000106216.3	536	4	453	-30	337	-3	3prime_fragment	FALSE	canonical	3	4052	junction_1	0	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGTCACCCACACTGTGCC	3998	False	NA	NA	False	NA	NA	NA	142891239	142890429	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142890538_142890991
104327	chr12	-	3555	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-77	-197	-77	197	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	487	17	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTCTGGTCATGGTATT	NA	False	NA	NA	False	NA	NA	NA	110662906	110656841	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
104328	chr14	+	812	6	FSM	ENSMUSG00000060126.15	ENSMUST00000110894.9	1169	6	238	119	0	-1	multi-exon	FALSE	canonical	3	5160	junction_2	168.161113221815	26	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTAAGAACTCTTTGCTG	1076	False	NA	NA	False	NA	NA	NA	76082770	76085736	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_76082897_76083056_76083131_76083642_76083834_76084133_76084240_76084683_76084801_76085538
104329	chr11	-	1497	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	-20	-51	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1131.0311047889	1	81	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCCTTGCAATGCA	9565	False	NA	NA	False	NA	NA	NA	5828232	5822238	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_5822419_5822669_5822753_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824202_5824296_5824430_5824760_5824885_5825061_5825176_5826712_5826990_5828191
104330	chr4	-	2305	12	NNC	ENSMUSG00000028766.11	novel	2522	12	NA	NA	71	-82	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	745.600362678591	1	136	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTTAATTTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	137523624	137469125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_137470014_137470495_137470616_137470978_137471135_137473703_137473839_137475069_137475140_137476859_137476995_137479858_137480011_137481173_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
104331	chr2	+	1093	10	Antisense	novelGene_ENSMUSG00000077733.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	332	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCGCGTGCGCGGGAGCT	NA	False	NA	NA	False	NA	NA	NA	10060840	10085247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_10060967_10061574_10061621_10063808_10063904_10064311_10064471_10068099_10068160_10068251_10068397_10068916_10069123_10073420_10073553_10074503_10074538_10085157
104332	chr12	-	2938	26	Intergenic	novelGene_4409	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	7	85	9	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATCTAATCTCCCTCTCTC	4860	False	NA	NA	False	NA	NA	NA	76366572	76307731	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr12_-_76307794_76317191_76317274_76326174_76326234_76326926_76326985_76327151_76327295_76327414_76327501_76329658_76329797_76330703_76330813_76335649_76335779_76336216_76336300_76336455_76336632_76337753_76337828_76340850_76341023_76344222_76344366_76347171_76347234_76348029_76348172_76349733_76349800_76350405_76350530_76350619_76350755_76353994_76354036_76357680_76357784_76358579_76358755_76361171_76361279_76361718_76361874_76364378_76364472_76366351
104333	chr13	-	3803	3	Intergenic	novelGene_1327	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	127	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTAACTGTCTTGGCTAC	8055	False	NA	NA	False	NA	NA	NA	23361131	23354445	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_23354656_23356101_23356267_23357703
104334	chr5	-	1163	7	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	0	-248	intron_retention	FALSE	non_canonical	0	0	junction_3	1537.10969752397	2	40	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACTTGCGCAGAAAAAAAAAA	8918	False	NA	NA	False	NA	NA	NA	142892480	142889503	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889697_142889821_142890004_142890098_142890340_142890433_142890538_142890991_142891232_142891318_142891448_142892406
104335	chr7	+	2249	8	NNC	ENSMUSG00000059851.16	novel	2177	9	NA	NA	18	-14	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	326.9896085224	1	96	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTAAGTCCTTAGGAGGT	671	False	NA	NA	False	NA	NA	NA	4743201	4750499	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_4743239_4744778_4744981_4745120_4745287_4745489_4745728_4745949_4746110_4748800_4748938_4749075_4749261_4749375
104336	chr7	+	1498	7	ISM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	464	11	-1	-11	3prime_fragment	FALSE	canonical	3	7665	junction_3	435.699310177201	1	70	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAACAGTGATGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	46497018	46505039	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_+_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
104338	chr4	+	2303	16	Antisense	novelGene_ENSMUSG00000028809.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0.249443825784929	1	105	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGAACCGATTATCCTGC	NA	False	NA	NA	False	NA	NA	NA	135051240	135074481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_135051421_135052130_135052589_135054399_135054533_135056321_135056366_135056693_135056831_135059034_135059123_135059471_135059550_135065114_135065392_135067814_135067920_135068144_135068173_135069707_135069885_135071174_135071291_135071808_135071981_135073626_135073756_135074044_135074172_135074427
104340	chr13	+	7031	2	NNC	ENSMUSG00000052551.17	novel	4318	11	NA	NA	3629	128454	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	77	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTCCATTTTACCAATG	NA	False	NA	NA	False	NA	NA	NA	8811993	8947237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_8817190_8945402
104342	chr14	-	2570	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	-35	-1234	0	-20	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	1	147	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAACCTGTTTAAATAT	8749	False	NA	NA	False	NA	NA	NA	52341461	52311021	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
104344	chr11	-	4264	6	NNC	ENSMUSG00000086998.2	novel	596	2	NA	NA	-227	6244	intron_retention	FALSE	non_canonical	0	0	junction_1	0	279	17	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTGAGGGGCCGCAGAC	NA	False	NA	NA	False	NA	NA	NA	46038170	46028365	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_46028476_46029663_46029800_46030516_46030603_46030830_46031054_46033741_46033897_46034616
104345	chr4	+	2504	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	13	-36	multi-exon	FALSE	non_canonical	0	0	junction_1	11.5475945016921	1	91	4	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAACTAACTCCAATAAAG	NA	False	NA	NA	False	NA	NA	NA	147216507	147669619	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217306_147217433_147316807_147316901_147536170_147536264_147596789_147597082_147599008_147599031_147667306_147667450_147668023
104346	chr5	+	975	6	FSM	ENSMUSG00000029430.14	ENSMUST00000111343.2	2423	6	285	1163	285	-1163	multi-exon	FALSE	canonical	3	14794	junction_4	293.478040064329	2	18	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAACAAGTGAATCATCC	830	False	NA	NA	False	NA	NA	NA	129097620	129100224	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
104347	chr4	+	2177	7	Fusion	ENSMUSG00000082779.2_ENSMUSG00000065999.14	novel	454	2	NA	NA	-44	-5	multi-exon	FALSE	non_canonical	0	0	junction_3	44.3824915428996	2	59	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209668	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536227_147665698_147665826_147667290_147667431_147667838_147668422_147668589
104348	chr6	+	2087	3	NIC	ENSMUSG00000042079.14	novel	956	4	NA	NA	19	-26	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	307	2	71	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTTAAAATAAAGACTTTT	NA	False	NA	NA	False	NA	NA	NA	117893960	117902554	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_117894033_117894430_117894560_117900668
104349	chr5	-	1969	1	ISM	ENSMUSG00000008348.10	ENSMUST00000136312.2	2618	2	2065	16	1237	-4	mono-exon	FALSE	NA	NA	NA	NA	NA	2	33	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCAAAAAATCTTCATTTG	NA	False	NA	NA	False	NA	NA	NA	125465013	125463044	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_125463000_125465000
104350	chr7	-	1349	10	NNC	ENSMUSG00000030695.17	novel	1460	9	NA	NA	-76	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	9519.19669943158	2	26	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACAACTATTTAAGGG	NA	False	NA	NA	False	NA	NA	NA	126399695	126394428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395909_126396025_126396081_126396508_126396721_126396815_126396949_126399459_126399531_126399676
104351	chr15	-	1677	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	18	48	18	-48	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	6	68	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTAAGTTTTCCATGATGT	49	False	NA	NA	False	NA	NA	NA	98832428	98829353	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
104352	chrX	+	1687	12	Antisense	novelGene_ENSMUSG00000035150.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	65	6	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCTCGGCAGCCGCCT	NA	False	NA	NA	False	NA	NA	NA	93234202	93256258	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_+_93234534_93239879_93240042_93240886_93241063_93243318_93243467_93244497_93244591_93246419_93246554_93247554_93247718_93248657_93248738_93252930_93253057_93253141_93253271_93255331_93255388_93256169
104353	chr4	-	3677	20	NNC	ENSMUSG00000028430.15	novel	4599	26	NA	NA	1204	-2	intron_retention	FALSE	non_canonical	0	0	junction_18	87.9605174585674	3	51	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGACTTGTCTTTCCTC	2754	False	NA	NA	False	NA	NA	NA	41121550	41114428	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121219_41121366_41121451
104354	chr13	-	1754	3	NNC	ENSMUSG00000074865.12	novel	2147	4	NA	NA	224	-13	intron_retention	FALSE	non_canonical	0	0	junction_1	20	1	112	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAATGTCGTAAGCTTG	NA	False	NA	NA	False	NA	NA	NA	62668041	62664623	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_62665985_62666207_62666545_62667985
104355	chr4	+	3270	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-4	0	multi-exon	FALSE	non_canonical	0	0	junction_1	20.3359538848849	1	136	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	922	False	NA	NA	False	NA	NA	NA	145237356	145351915	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237542_145239491_145239630_145299299_145300051_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
104356	chr4	-	2158	8	Antisense	novelGene_ENSMUSG00000095096.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	51	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCGAGAATGCTGGAATG	NA	False	NA	NA	False	NA	NA	NA	146319698	146033879	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_146033904_146036301_146036389_146058430_146058580_146060725_146060871_146061452_146062222_146062389_146063085_146255349_146255569_146319628
104357	chr4	+	2691	8	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000070605.5	novel	410	4	NA	NA	2394	-1901	multi-exon	FALSE	non_canonical	0	0	junction_2	41.3037528561268	2	76	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146036308	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146036397_146209452_146209546_146312913_146312972_146388486_146388614_146390758_146390904_146391317_146392628_146392797_146393416_146552596
104358	chr4	+	2314	6	Fusion	ENSMUSG00000087207.9_ENSMUSG00000065999.14	novel	585	4	NA	NA	11	0	multi-exon	FALSE	non_canonical	0	0	junction_1	39.239775738401	1	66	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	4121	False	NA	NA	False	NA	NA	NA	147314751	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147316867_147316901_147536170_147536227_147665698_147665826_147667290_147667431_147667838
104359	chr4	+	2386	8	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	2762	6	NA	NA	-2	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	42.74747874174	2	69	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147576871	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147577080_147578832_147578927_147637755_147637884_147639766_147639921_147661528_147661587_147665698_147665826_147667290_147667435_147668177
104360	chr11	+	1106	2	FSM	ENSMUSG00000019505.8	ENSMUST00000136938.2	890	2	117	-333	117	-27	multi-exon	FALSE	canonical	3	711	junction_1	0	2	58	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTTTTGTTGCATGGT	NA	False	NA	NA	False	NA	NA	NA	62442618	62444012	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_62442678_62442965
104361	chr4	+	2945	9	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	36	-1901	multi-exon	FALSE	non_canonical	0	0	junction_1	40.0169885798519	2	133	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206977	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207052_146207565_146207842_146291416_146291514_146368118_146368156_146388486_146388614_146390758_146390904_146391317_146392679_146392839_146393416_146552596
104362	chr4	+	2405	4	NNC	ENSMUSG00000085101.8	novel	545	3	NA	NA	100	1906	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	47.2040487905669	1	144	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145136935	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138756_145138851_145173287_145173342_145176036
104363	chr4	+	2101	5	Antisense	novelGene_ENSMUSG00000083642.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	6.92820323027551	1	101	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACTTCCTGTCATTT	NA	False	NA	NA	False	NA	NA	NA	147758022	147860301	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_147758693_147839384_147840029_147840112_147840695_147845677_147845738_147860156
104364	chr4	+	2583	6	Fusion	ENSMUSG00000082082.2_ENSMUSG00000078502.11	novel	1575	3	NA	NA	-34541	-6	multi-exon	TRUE	non_canonical	0	0	junction_1	38.8	1	137	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCAACAAGTTTGCTTTG	NA	False	NA	NA	False	NA	NA	NA	145138768	145351905	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145138851_145173283_145173342_145176036_145176317_145264184_145264703_145349419_145349958_145350798
104365	chr4	-	2039	6	Fusion	ENSMUSG00000078495.11_ENSMUSG00000062518.8	novel	2405	4	NA	NA	15	-46	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	96	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTCCTGTAACTAACT	8388	False	NA	NA	False	NA	NA	NA	147860275	147758004	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_-_147758743_147839350_147839456_147839540_147840044_147840122_147840586_147845673_147845783_147860154
104366	chr4	+	1726	4	Fusion	ENSMUSG00000067916.10_ENSMUSG00000078498.6_ENSMUSG00000065999.14	novel	2813	7	NA	NA	106	-9	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	93	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147216600	147669646	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216647_147217303_147217414_147417186_147417364_147668253
104367	chr4	+	2214	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	774	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	31.5841028929991	1	103	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGTTTGCTTTGGTTGTTT	NA	False	NA	NA	False	NA	NA	NA	145159006	145178232	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145159032_145160315_145160389_145176036_145176260_145176339
104368	chr4	-	2205	18	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	18	-3102	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_13	239.077943306735	1	101	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCTGCTGCTGAACTGTCC	6	True	NA	NA	False	NA	NA	NA	41275098	41202319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229696_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
104369	chr5	+	3684	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4930	-219	intron_retention	FALSE	non_canonical	0	0	junction_3	827.058165538358	1	154	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTAATTTTAACTGAAC	NA	False	NA	NA	False	NA	NA	NA	108208609	108256651	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108242001_108242119_108246991_108247053_108248678_108248850_108251905_108251992_108252131_108252185_108252291_108252362_108254437
104370	chr17	+	2291	15	NIC	ENSMUSG00000007564.16	novel	2410	15	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	2	39	junction_14	332.623806933261	255	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTCTCTAGTCTTAGT	NA	False	NA	NA	False	NA	NA	NA	21165716	21186167	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185629_21185716
104372	chr11	+	1748	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	80	272	-12	-272	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	36431	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATATATCATGCCTCCA	3071	False	NA	NA	False	NA	NA	NA	75623774	75656399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
104373	chr4	+	3419	5	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078497.10	novel	585	4	NA	NA	-3	2154	multi-exon	FALSE	canonical	3	16	junction_2	235.308706808737	1	185	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	4107	False	NA	NA	False	NA	NA	NA	147314737	147477615	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314893_147316807_147316901_147469673_147469759_147472778_147472906_147474656
104374	chr4	+	4115	6	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-34	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	199.487944497907	1	228	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146093359	146135324	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535_146133724_146133891
104375	chr4	+	4408	5	Intergenic	novelGene_2095	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	17	junction_1	171.510021573085	1	250	3	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	146426566	146806007	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146426715_146428065_146428160_146797298_146797381_146800390_146800518_146802050
104376	chr4	-	2720	7	Antisense	novelGene_ENSMUSG00000082615.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	104	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTCCTGGTTCCTCAG	NA	False	NA	NA	False	NA	NA	NA	145431010	145237323	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145237495_145239548_145239638_145343685_145343743_145347122_145347256_145348720_145349243_145350838_145350898_145429321
104377	chr4	+	4003	6	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	3824	-6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	207.762749307955	1	136	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	145401078	145431005	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145401211_145404603_145404655_145406465_145406546_145422723_145422806_145425813_145425941_145427474
104378	chr4	-	1972	2	Antisense	novelGene_ENSMUSG00000096354.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	78	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAAGGTTTCTCTCCTGAA	NA	False	NA	NA	False	NA	NA	NA	147477618	147143191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_147143342_147475796
104379	chr15	-	1535	4	NNC	ENSMUSG00000023004.9	novel	1743	4	NA	NA	49	-26	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5428.71795792217	1	57	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAGTAAAAGCTTTAAGAA	207	False	NA	NA	False	NA	NA	NA	98832270	98829331	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_-_98830444_98830572_98830716_98830853_98831077_98832213
104380	chr1	-	4260	17	NNC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	6	-122	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	132.355330809718	1	266	14	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGTCTGTTCATATTTA	NA	False	NA	NA	False	NA	NA	NA	133589112	133547730	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568467_133573464_133573585_133575073_133575268_133581710_133581771_133588974
104381	chr7	-	3203	21	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	55	428	55	9	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	1	58	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAGCAACACTGAATACT	NA	False	NA	NA	False	NA	NA	NA	110682169	110671566	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
104384	chr6	+	1171	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	967	170	at_least_one_novel_splicesite	FALSE	canonical	3	602	junction_1	2063.97825139274	1	43	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCCACATGAGAGGGCTG	4755	False	NA	NA	False	NA	NA	NA	117884776	117901585	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117884841_117894430_117894560_117896059_117896121_117900668
104386	chrX	+	2753	6	FSM	ENSMUSG00000031381.17	ENSMUST00000208261.2	831	6	21	-1943	21	-96	multi-exon	FALSE	canonical	3	10	junction_2	93.3967879533338	1	122	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATACTGTGTTGCTTTT	NA	False	NA	NA	False	NA	NA	NA	163202823	163216811	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_+_163202837_163205579_163205661_163210927_163211061_163211535_163211669_163211806_163212014_163214625
104387	chr15	+	1172	7	Antisense	novelGene_ENSMUSG00000022403.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	78	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATTACACCTTCAT	NA	False	NA	NA	False	NA	NA	NA	81249246	81272572	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr15_+_81249764_81250556_81250693_81255638_81255775_81259003_81259108_81261888_81262000_81262116_81262207_81272494
104388	chrX	-	1876	11	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	156	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	437.983150360833	1	69	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAAAACCTGTCCTG	NA	False	NA	NA	False	NA	NA	NA	100127631	100122820	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_100123199_100123318_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476
104389	chr6	+	2081	4	NNC	ENSMUSG00000042079.14	novel	2147	4	NA	NA	-2	-112	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2347.57236310193	2	51	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTAAAGCTTTCTTTGTAC	3727	False	NA	NA	False	NA	NA	NA	117883748	117902468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117883840_117894430_117894560_117896059_117896121_117900668
104390	chr6	+	1617	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	937	-480	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2171.5704506698	1	31	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTACCTCTTCAGTGTTTC	4725	False	NA	NA	False	NA	NA	NA	117884746	117902100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117884841_117894430_117894560_117896059_117896099_117900745
104392	chr11	-	921	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-67	176	multi-exon	FALSE	canonical	0	0	junction_1	0	9	37	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	4394	False	NA	NA	False	NA	NA	NA	20286080	20284835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285186_20285509
104393	chr6	+	1422	8	NIC	ENSMUSG00000036371.7	novel	15474	8	NA	NA	-2	-7	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	2307.25916557782	1	83	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGGACTGTCATT	5864	False	NA	NA	False	NA	NA	NA	67243986	67261043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249217_67249802_67249923_67254744_67254923_67258631_67258806_67260886
104395	chr5	+	3937	14	ISM	ENSMUSG00000029267.18	ENSMUST00000131264.8	3732	17	15041	-737	2592	2	3prime_fragment	FALSE	canonical	0	0	junction_2	631.958812604431	1	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAATGAGTTTTTCTTCTG	NA	False	NA	NA	False	NA	NA	NA	108228622	108256872	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252260_108252397_108254453
104396	chr16	+	1888	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	316	4	1	-3	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	1	92	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATATAGGTGGTCTGGCC	6055	False	NA	NA	False	NA	NA	NA	22926509	22932693	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
104397	chr9	+	4920	26	NNC	ENSMUSG00000032216.16	novel	5499	29	NA	NA	1277	-267	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	788.510139440198	1	175	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATGAAACACAAAATTGCA	6436	False	NA	NA	False	NA	NA	NA	72577238	72656867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_72577399_72578511_72578586_72584596_72584712_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644106_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
104398	chr6	-	2771	15	NNC	ENSMUSG00000040669.15	novel	3893	15	NA	NA	-7	-316	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	311.823316338347	1	148	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCAGGAGATTGATGGAC	9115	False	NA	NA	False	NA	NA	NA	122316578	122295578	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300409_122300453_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
104399	chr14	+	2029	14	NNC	ENSMUSG00000021957.8	novel	3223	14	NA	NA	-2	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	898.937736027606	1	122	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAATTAATCCTCAGAC	NA	False	NA	NA	False	NA	NA	NA	30271135	30295570	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287624_30288924_30289018_30290120_30290315_30290931_30291101_30291920_30292070_30292159_30292295_30292919_30293004_30293108_30293203_30294164_30294288_30295293
104400	chr4	+	2362	8	Fusion	ENSMUSG00000078498.6_ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	-35	0	multi-exon	TRUE	non_canonical	0	0	junction_1	124.104465541522	4	76	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	147390095	147669655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147390233_147447267_147447362_147536170_147536311_147592021_147592098_147595209_147595337_147596801_147597042_147599137_147599262_147668231
104401	chr13	-	2802	9	NNC	ENSMUSG00000021546.19	novel	2585	12	NA	NA	-92	-17	intron_retention	FALSE	canonical	0	0	junction_1	2319.54550707137	1	123	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTCCATGATGTTAGT	NA	False	NA	NA	False	NA	NA	NA	58544971	58539069	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_-_58540221_58541005_58541180_58541505_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640
104402	chr4	-	3000	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	-67	4544	-67	-63	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	2	99	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGCTTTTTTATAAGAGT	NA	False	NA	NA	False	NA	NA	NA	148711543	148701382	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
104403	chr2	+	1041	1	Intergenic	novelGene_2626	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	51	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATTAATGAAACTTTAGTAA	NA	False	NA	NA	False	NA	NA	NA	52018336	52019377	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr2_+_52018300_52019400
104404	chr11	-	1752	13	NNC	ENSMUSG00000000278.11	novel	2097	13	NA	NA	84	-241	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	959.770411637885	1	95	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGAGCAAAAGCAAACCA	5285	False	NA	NA	False	NA	NA	NA	88846207	88815086	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_88815540_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832174_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
104405	chr5	+	2320	16	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	73	8	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCACAGAGATACAGCAACG	NA	False	NA	NA	False	NA	NA	NA	31315787	31331840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315840_31316405_31316534_31316777_31316862_31317039_31317206_31317291_31317434_31323226_31323346_31323689_31323733_31325043_31325141_31325326_31325448_31325597_31325823_31326394_31326496_31327181_31327262_31327525_31327619_31330125_31330408_31331111_31331436_31331577
104406	chr5	-	1934	1	Antisense	novelGene_ENSMUSG00000018604.19_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	8	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATGTGTAGGGGTAAGG	9304	False	NA	NA	False	NA	NA	NA	119822682	119820748	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_119820700_119822700
104407	chr9	+	1323	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1448	157	1430	-157	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	2	44	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGACAAACCCTTGTGTG	NA	False	NA	NA	False	NA	NA	NA	64082104	64085791	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
104408	chr4	+	2670	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000070605.5	novel	314	3	NA	NA	6	-1901	multi-exon	TRUE	non_canonical	0	0	junction_1	37.7441026380363	1	91	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCACATTATAGGATAACA	NA	False	NA	NA	False	NA	NA	NA	146206906	146552848	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146207224_146207708_146207838_146209452_146209546_146291416_146291572_146312913_146312972_146388486_146388614_146390758_146390911_146391607_146392337_146392757_146393444_146552624
104409	chr10	+	1617	9	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-217	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	2226.62749115675	1	7	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCCACTAGGTCTTGGC	2196	False	NA	NA	False	NA	NA	NA	81012479	81016245	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015864_81016007
104410	chr10	-	2897	14	Antisense	novelGene_ENSMUSG00000064441.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	2	43	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAAGAGACCGCTGACGTC	7926	False	NA	NA	False	NA	NA	NA	81018268	81012487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_81012583_81013509_81013714_81013886_81013987_81014546_81014726_81014913_81015092_81015177_81015284_81015375_81015638_81015721_81015910_81015984_81016244_81016396_81016505_81016635_81016990_81017059_81017243_81017324_81017462_81017724
104412	SIRV5	+	1944	16	NNC	SIRV5A	novel	2085	17	NA	NA	0	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	4163.01758930813	2	98	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTACCGCCAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	1008	10990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3399_3483_3644_5380_5451_5543_5702_6593_6723_6826_6958_7144_7308_7681_7763_7870_8100_8190_8382_8454_8586_10858
104413	chr5	-	1827	5	ISM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	1009	43	76	-43	3prime_fragment	FALSE	canonical	3	4052	junction_3	83.3351666465004	1	87	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTGAGACCAATAAAAGT	9898	False	NA	NA	False	NA	NA	NA	142891500	142888912	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318
104414	chr6	+	3826	11	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	46	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACAGAATCAGTAAAAGGT	1085	False	NA	NA	False	NA	NA	NA	122295264	122313976	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297007_122297170_122297276_122297902_122298009_122298827_122300777_122302418_122302908_122310247_122310400_122311028_122311112_122311933_122311995_122313819
104415	chr4	+	4107	9	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-54	182150	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	158.229609665827	3	98	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	146586429	146806002	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146586609_146597241_146597335_146603534_146603611_146797295_146797381_146800390_146800518_146802050_146802606_146802658_146803365_146803449_146804173_146804439
104416	chr1	-	1714	10	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	3447	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	3107.3885427406	1	73	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	7902	False	NA	68	True	NA	NA	NA	55123736	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117871_55118296_55118399_55119269_55119507_55120236_55120332_55120818_55120988_55121216_55121311_55122221_55122322_55122883_55122967_55123691
104417	chr1	-	1975	11	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	20	-217	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	3113.67731789921	2	44	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCTGGGTGCAAGAGC	4256	False	NA	NA	False	NA	NA	NA	55127382	55117210	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119659_55120930_55120988_55121216_55121311_55122231_55122322_55122883_55122967_55123689_55123945_55125924_55126101_55127303
104418	chr3	-	2694	16	Fusion	ENSMUSG00000105135.2_ENSMUSG00000027679.14	novel	2499	6	NA	NA	10210	14810	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	99	6	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCATAAAACAAAAAGTTGTA	NA	False	NA	NA	False	NA	NA	NA	34124119	34093673	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr3_-_34093729_34095211_34095304_34100178_34100242_34100582_34100735_34101114_34101208_34101779_34101898_34103301_34103469_34104221_34104302_34108369_34108514_34110507_34110564_34112170_34112230_34112314_34112385_34115980_34116178_34118265_34118465_34122305_34122407_34123071
104419	chr9	+	1321	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1449	158	1431	-158	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	2	81	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTGACAAACCCTTGTGT	NA	False	NA	NA	False	NA	NA	NA	64082105	64085790	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
104420	chr19	-	4009	26	Antisense	novelGene_ENSMUSG00000024740.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	172	11	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCGACGATAGAGAGACGG	NA	False	NA	NA	False	NA	NA	NA	10607186	10583036	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr19_-_10583130_10584207_10584356_10585154_10585271_10585611_10585835_10588060_10588183_10589016_10589095_10590234_10590387_10591468_10591555_10592213_10592329_10592845_10592953_10596410_10596487_10596581_10596691_10598902_10599080_10599180_10599347_10599423_10599526_10599650_10599860_10600700_10600795_10600887_10601005_10602476_10602709_10603268_10603362_10603978_10604125_10604487_10604597_10604849_10605021_10605123_10605235_10605804_10605934_10606458
104421	chr9	-	2568	14	Genic_Genomic	ENSMUSG00000086728.3	novel	1910	4	NA	NA	11725	3177	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	111	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGGGGAGTCTGCTGAC	NA	False	NA	NA	False	NA	NA	NA	57026457	57004056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr9_-_57004258_57005108_57005263_57005390_57005549_57008403_57008489_57011151_57011269_57011877_57012092_57012863_57012978_57014634_57014876_57015989_57016181_57017862_57018437_57020829_57020997_57024662_57024838_57025350_57025445_57026374
104422	chr18	+	1229	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	22	-61	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	2	51	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCCCCCCAGTGGTTTACA	NA	False	NA	NA	False	NA	NA	NA	48179735	48181399	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48179948_48180382
104423	chr11	+	1727	8	FSM	ENSMUSG00000020402.12	ENSMUST00000020673.3	891	8	34	-870	34	-4	multi-exon	FALSE	canonical	3	3141	junction_5	166.267181097786	1	44	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	3573	False	NA	NA	False	NA	NA	NA	52265123	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
104424	chr11	+	2538	2	Intergenic	novelGene_2361	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	822	junction_1	0	1	141	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGCTGGGTAAGGGGGT	NA	False	NA	NA	False	NA	NA	NA	57448338	57450923	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr11_+_57450433_57450479
104425	chr11	+	1593	7	NNC	ENSMUSG00000020849.14	novel	2100	6	NA	NA	8	-311	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	3901.83149302991	1	57	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACATTAAACTTAAATAAAA	3043	False	NA	NA	False	NA	NA	NA	75623746	75656360	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445_75656010_75656153
104426	chr1	+	3238	21	NNC	ENSMUSG00000037461.11	novel	5347	20	NA	NA	0	27	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	84.4823058397437	1	161	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGTGCTTTTTTTTTTT	8333	False	NA	NA	False	NA	NA	NA	191307887	191353785	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_191308064_191313959_191314006_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
104427	chr4	+	2420	7	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	15	0	multi-exon	FALSE	non_canonical	0	0	junction_1	69.7654801619126	1	82	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	4125	False	NA	NA	False	NA	NA	NA	147314755	147418191	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147314882_147398491_147398579_147400358_147400432_147409230_147409335_147413438_147413566_147415724_147417219_147417782
104428	chr8	+	1496	1	Intergenic	novelGene_1594	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	61	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGTACGTGTGGCACC	NA	False	NA	NA	False	NA	NA	NA	21120521	21122017	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr8_+_21120500_21122000
104430	chr11	-	1413	1	Antisense	novelGene_ENSMUSG00000086475.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGAGGGCTCCCCCACGT	51	False	NA	NA	False	NA	NA	NA	41111469	41110056	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_-_41110100_41111500
104431	chr17	-	3257	16	Antisense	novelGene_ENSMUSG00000001228.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	124	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGCCGATGTACTGGA	NA	False	NA	NA	False	NA	NA	NA	56630436	56612100	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_56612249_56616334_56616578_56617673_56617828_56619053_56619279_56619870_56619968_56620040_56620251_56622190_56622314_56622396_56622505_56622774_56622881_56624002_56624113_56625001_56625150_56625244_56625382_56627158_56627271_56627394_56627542_56629019_56629124_56629351
104433	chr2	+	2288	7	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	19950	15	-108	-15	3prime_fragment	FALSE	canonical	3	2736	junction_1	195.581753295706	1	59	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTAACACATTGTAGTGTC	NA	False	NA	NA	False	NA	NA	NA	162916556	162926593	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
104435	chr4	-	3094	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	17	63785	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.201572947855	1	161	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGATTCAACAAATTTGC	NA	False	NA	NA	False	NA	NA	NA	146994030	146912367	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913315_146913571_146914279_146976154_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993876
104436	chr9	+	1233	9	ISM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	1523	172	1505	-172	3prime_fragment	FALSE	canonical	3	16882	junction_2	1403.52242144541	2	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAATCAAACATGTGGTG	NA	False	NA	NA	False	NA	NA	NA	64082179	64085776	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
104437	chr12	+	1585	12	Antisense	novelGene_ENSMUSG00000056458.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	3	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATATTGTATTCCTGTCGC	NA	False	NA	NA	False	NA	NA	NA	110774268	110807338	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110774559_110774640_110774840_110776342_110776457_110777037_110777175_110778211_110778315_110779948_110780128_110781401_110781451_110781564_110781646_110792877_110792947_110794474_110794565_110800559_110800675_110807179
104438	chr7	-	2152	12	NNC	ENSMUSG00000059119.10	novel	2259	15	NA	NA	1522	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	333.787431738789	1	100	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	5891	False	NA	NA	False	NA	NA	NA	143093985	143067319	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143068375_143074120_143074178_143077880_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924
104439	chr3	+	4247	28	NNC	ENSMUSG00000105552.2	novel	640	4	NA	NA	-975	31018	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	1	141	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCACACTGACACCCCGGG	NA	False	NA	NA	False	NA	NA	NA	89907446	89959770	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr3_+_89908317_89909576_89909786_89910554_89910623_89915565_89915670_89916418_89916634_89917738_89917821_89919992_89920047_89922436_89922531_89922604_89922806_89924011_89924079_89924421_89924595_89925718_89925785_89926469_89926651_89928205_89928377_89928545_89928824_89930737_89930935_89932367_89932545_89933912_89933988_89935633_89935695_89938623_89938677_89941370_89941485_89941961_89942006_89945674_89945773_89946121_89946324_89951006_89951118_89952160_89952238_89955075_89955207_89959696
104440	chr6	+	770	5	Antisense	novelGene_ENSMUSG00000030268.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	28	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACGGGGCTCAGGATCAC	NA	False	NA	NA	False	NA	NA	NA	144945756	144965019	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_144946031_144950076_144950152_144953341_144953485_144961141_144961318_144964917
104441	chr3	+	2202	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	18	10	18	-5	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	1	131	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCACGATCAGACCGGCTT	NA	False	NA	NA	False	NA	NA	NA	89986864	90008198	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
104442	chr4	+	2810	8	Fusion	ENSMUSG00000087207.9_ENSMUSG00000067916.10_ENSMUSG00000078498.6_ENSMUSG00000065999.14	novel	1173	3	NA	NA	-156295	-25	multi-exon	TRUE	non_canonical	0	0	junction_1	65.0864417368102	1	177	4	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAATAAAGCTGAAAGATTC	NA	False	NA	NA	False	NA	NA	NA	147060199	147669630	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147060315_147219028_147219122_147337800_147337844_147413430_147413566_147415724_147415863_147416444_147417362_147599031_147599079_147668308
104443	chr12	-	1250	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	476	2	-318	-2	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	374	44	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638296	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
104444	chr2	+	4211	30	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	2	3018	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	137.908584379871	1	166	16	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACACTCCGACGGTCTT	NA	False	NA	NA	False	NA	NA	NA	51962845	52000755	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51962883_51963174_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922
104445	chr14	+	1758	13	ISM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	74	2397	-6	-1301	5prime_fragment	FALSE	canonical	3	1855	junction_3	135.937766602548	1	70	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGAAGGTAACTGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	30271161	30294280	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164
104446	chr5	-	1505	4	NNC	ENSMUSG00000029580.15	novel	1920	6	NA	NA	365	-26	intron_retention	FALSE	non_canonical	0	0	junction_1	1923.94756223298	1	68	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGCACACCTTACCTTACA	4026	False	NA	NA	False	NA	NA	NA	142891211	142888895	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_142889601_142889862_142890004_142890098_142890538_142890991
104447	chr18	+	1593	2	NNC	ENSMUSG00000059040.6	novel	1791	2	NA	NA	-3	-87	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	1	80	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGGGTGCCCACCATCAA	NA	False	NA	NA	False	NA	NA	NA	48179710	48181373	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr18_+_48181215_48181284
104448	chr6	-	1679	8	NNC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	19	-59	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	637.324061356288	1	81	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTATATATATTGACACAT	NA	False	NA	NA	False	NA	NA	NA	124942234	124935837	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942149
104449	chr6	-	1562	11	NNC	ENSMUSG00000004980.17	novel	1638	11	NA	NA	69	-8	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	2724.69199176714	1	75	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAAATTGTGTAATTAT	NA	False	NA	NA	False	NA	NA	NA	51446683	51439747	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_-_51440235_51440386_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444167_51444276_51446650
104450	chr19	+	1362	1	Intergenic	novelGene_1229	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	57	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGAGGCTCGGTCTTCAG	2413	False	NA	NA	False	NA	NA	NA	22701071	22702433	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22701100_22702400
104451	chr17	+	3044	18	NNC	ENSMUSG00000001228.15	novel	3483	17	NA	NA	-32	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	784.349994259457	1	62	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCAGTGGTGGCGCACGTC	467	False	NA	NA	False	NA	NA	NA	56610367	56630481	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625387_56627161_56627283_56627396_56627543_56629020_56629126_56629355_56629743_56630210
104452	chr4	-	1491	3	Antisense	novelGene_ENSMUSG00000082082.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	87	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTACTTCTGCCTAGCCC	NA	False	NA	NA	False	NA	NA	NA	145177947	145158984	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_-_145159145_145176031_145176474_145177058
104453	chr3	+	1745	3	ISM	ENSMUSG00000025764.15	ENSMUST00000170711.8	2896	11	40896	-202	2073	202	3prime_fragment	FALSE	canonical	3	776	junction_1	7.5	1	40	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCAACAAATGAAGTAACTTT	3203	False	NA	NA	False	NA	NA	NA	41558937	41568695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr3_+_41559427_41564237_41564356_41567557
104454	chr16	-	2826	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	1	-61	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	1	107	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCTGAGTCTACACTGC	NA	False	NA	NA	False	NA	NA	NA	16176801	16131307	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
104455	chr1	-	1846	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	189	-386	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	1850.97436034231	1	96	7	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACTTCAGAGAAGTCACC	4644	False	NA	NA	False	NA	NA	NA	55126994	55117379	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121315_55122231_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
104456	chr11	-	2268	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	97	1194	32	-1	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	29	10	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTAAGTGAAATTGTACT	9713	False	NA	NA	False	NA	NA	NA	106679261	106672374	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
104457	chr17	+	433	2	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	8	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTCCATGTTGGCTGTCC	NA	False	NA	NA	False	NA	NA	NA	45878870	45879407	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153
104458	chr7	+	1073	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	93	66	93	-66	mono-exon	FALSE	NA	NA	NA	NA	NA	3	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGGAGGGGCCTAGGGA	NA	False	NA	NA	False	NA	NA	NA	51396487	51397560	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
104459	chr14	-	4551	22	NNC	ENSMUSG00000000958.11	novel	2278	12	NA	NA	-192	8601	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	74.7176393068114	1	106	9	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTACTCTCGCGCACG	NA	False	NA	NA	False	NA	NA	NA	54655429	54598297	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_-_54598374_54598777_54598924_54600736_54600957_54604169_54604310_54604479_54604566_54604720_54604886_54605042_54605146_54605245_54605410_54605607_54605690_54605773_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54649041_54649104_54651336_54651471_54654045_54654101_54655357
104460	chr4	+	2613	12	Fusion	ENSMUSG00000078496.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	-360090	-6	multi-exon	FALSE	non_canonical	0	0	junction_1	108.907042020491	1	101	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACAAGTTTGCTTTGGTTG	NA	False	NA	NA	False	NA	NA	NA	147216783	147669649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216902_147217209_147217441_147393100_147393194_147536170_147536264_147586007_147586206_147592042_147592098_147595209_147595337_147596801_147596997_147597081_147597092_147599102_147599261_147668146_147668422_147668589
104461	chr2	+	3068	20	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-927	3015	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	157.33516635081	1	103	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAAAACACTCCGACGGT	6296	False	NA	NA	False	NA	NA	NA	51978657	52000752	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983606_51984607_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997732_51998451_51998604_51999203_51999288_51999362_51999415_51999922
104462	chr4	-	1165	7	NNC	ENSMUSG00000028809.17	novel	3740	18	NA	NA	-2219	-300	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	422.258379299794	1	45	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCCCTGCGGTCCATGCGG	NA	False	NA	NA	False	NA	NA	NA	135056753	135048704	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056322_135056357_135056683
104463	chr4	-	1909	16	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	10	-508	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	324.299285640081	1	82	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACCTCAGGTATACACCC	-2	True	NA	NA	False	NA	NA	NA	41275106	41199725	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205596_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221628_41233675_41233715_41235516_41235595_41251534_41251672_41275039
104465	chrX	-	4519	24	Antisense	novelGene_ENSMUSG00000000037.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	29	160	15	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGGCCCAAGCTGCCAATC	NA	False	NA	NA	False	NA	NA	NA	160041203	159940099	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_159940300_159960239_159960312_159961030_159961268_159970264_159970347_159975197_159975449_159985008_159985091_159992183_159992264_159992602_159992687_159996243_159996318_159998173_159998258_160006150_160006234_160008870_160008954_160010366_160010451_160011670_160011755_160013084_160013169_160014393_160014484_160017610_160017691_160020473_160020752_160022743_160022855_160024975_160025193_160026367_160026543_160029250_160029361_160038022_160038175_160039561
104466	chr6	+	2205	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	967	0	at_least_one_novel_splicesite	FALSE	canonical	3	135	junction_1	2283.97154097856	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	4755	False	NA	NA	False	NA	NA	NA	117884776	117902580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117884880_117894430_117894560_117896059_117896121_117900668
104467	chr9	+	1348	9	NNC	ENSMUSG00000032399.9	novel	1538	10	NA	NA	0	-147	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	6509.08873110323	2	75	5	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTGTGTGACTCTTAAAT	NA	False	NA	NA	False	NA	NA	NA	64080656	64085801	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083521_64084537_64084760_64085002_64085087_64085178_64085300_64085504
104468	chrX	+	3513	24	NNC	ENSMUSG00000031060.17	novel	3564	24	NA	NA	27	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	136.801969386326	4	142	11	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCATTTCTACTTTCTC	421	False	NA	NA	False	NA	NA	NA	20483887	20517128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511684_20511837_20512007_20512103_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
104470	chr12	-	1362	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	364	2	308	-2	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	270	39	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTCTGAGTGTTGCTTCT	NA	False	NA	NA	False	NA	NA	NA	111638408	111635796	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
104471	chr4	-	4628	20	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	39	18310	intron_retention	TRUE	non_canonical	0	0	junction_1	136.705701247105	10	115	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCAGGCGCAACCGCCGAG	9174	False	NA	NA	False	NA	NA	NA	155976144	155954025	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_155954177_155956582_155956680_155957304_155957378_155959591_155959821_155969551_155969653_155969742_155969778_155970020_155970159_155970546_155970611_155971250_155971444_155971571_155971656_155971887_155971977_155972059_155972225_155972311_155972418_155972502_155972567_155972638_155972782_155972850_155972981_155973074_155974054_155974125_155975127_155975209_155975360_155975508
104472	chr4	+	2505	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43742	5	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	171.158873564884	1	69	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCAAATGAGCCAATTGAGA	NA	False	NA	NA	False	NA	NA	NA	145508064	145556517	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145508210_145510590_145510684_145541336_145541410_145552661_145552806_145554256_145554345_145554555
104473	chr4	+	2844	10	Fusion	ENSMUSG00000085525.8_ENSMUSG00000066009.9_ENSMUSG00000066007.16_ENSMUSG00000070605.5	novel	410	4	NA	NA	13	-1898	multi-exon	TRUE	non_canonical	0	0	junction_1	54.665537477046	1	146	7	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACATTATAGGATAACAACT	NA	False	NA	NA	False	NA	NA	NA	146033894	146552851	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146033964_146094943_146095022_146209452_146209546_146211490_146211596_146214919_146215011_146388531_146388614_146390758_146390917_146391329_146392673_146392839_146393455_146552641
104474	chrX	-	665	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-74	408	-74	-408	mono-exon	FALSE	NA	NA	NA	NA	NA	2	3	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGGGCTGCCCAGAACAT	NA	False	NA	NA	False	NA	NA	NA	79238532	79237867	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237900_79238500
104475	chr4	+	2622	9	Fusion	ENSMUSG00000067916.10_ENSMUSG00000065999.14	novel	2813	7	NA	NA	13	-5	multi-exon	TRUE	non_canonical	0	0	junction_1	33.4026103021905	1	103	4	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216507	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147216818_147534439_147534577_147536170_147536264_147545579_147545711_147639766_147639891_147665685_147665826_147667290_147667433_147667939_147668424_147668589
104476	chr4	+	2427	11	Fusion	ENSMUSG00000078498.6_ENSMUSG00000067916.10_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-5	182324	multi-exon	TRUE	non_canonical	0	0	junction_1	148.81804326089	1	106	6	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTACAAGGTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	147056427	147600515	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147056627_147058404_147058498_147109614_147109658_147216737_147216790_147261203_147261331_147262781_147262920_147263585_147263665_147264089_147264265_147416451_147416988_147417411_147418091_147600209
104478	chr6	+	1969	3	NNC	ENSMUSG00000042079.14	novel	2147	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1075	11	62	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3727	False	NA	NA	False	NA	NA	NA	117883748	117902580	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117883801_117894430_117894560_117900792
104479	chr5	+	3237	4	Antisense	novelGene_ENSMUSG00000051391.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	110	2	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGCTACTGAGACGAGGA	2136	False	NA	NA	False	NA	NA	NA	135937240	135963380	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135938096_135938187_135939762_135939897_135940501_135963175
104480	chr5	+	3450	3	Antisense	novelGene_ENSMUSG00000051391.10_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	14	101	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCCAATGCGTGCCGCGG	2136	False	NA	NA	False	NA	NA	NA	135937240	135963453	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_135938096_135938187_135940501_135963171
104482	chr17	+	2027	5	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	42	109	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCACTGATCTCCTTCTCC	NA	False	NA	112	True	NA	NA	NA	45878699	45881458	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45879050_45879153_45880065_45880179_45880314_45880395_45880753_45881183
104484	chr11	-	2720	5	NNC	ENSMUSG00000057113.14	novel	1157	10	NA	NA	-2794	2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	10354.191542559	12	38	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGATGTATGTGACAATA	NA	False	NA	-138	True	NA	NA	NA	33110071	33104924	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33108883_33109725
104485	chr2	+	322	5	ISM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	244	1	203	-1	3prime_fragment	FALSE	canonical	3	3954	junction_4	1482.42763314099	1	23	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCTTTTGCTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	179899413	179900237	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr2_+_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
104486	chr11	+	1730	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	87	283	-5	-283	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTAAAAATGCCAAATATA	3078	False	NA	NA	False	NA	NA	NA	75623781	75656388	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
104487	chr4	-	1169	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-70	-97	-70	97	mono-exon	FALSE	NA	NA	NA	NA	NA	5	14	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCCAGACCCCCATAATAA	NA	False	NA	NA	False	NA	NA	NA	91740976	91739807	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739800_91741000
104488	chr5	-	1077	1	FSM	ENSMUSG00000094708.2	ENSMUST00000180167.2	1002	1	-68	-7	-68	7	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGACCACCCACCCCAGCAA	NA	False	NA	NA	False	NA	NA	NA	106011636	106010559	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_106010600_106011600
104490	chr7	-	2538	23	NNC	ENSMUSG00000010755.18	novel	3222	23	NA	NA	-7	-20	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_21	486.090222639228	1	96	12	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATTCTTCTGAACGGT	NA	False	NA	NA	False	NA	NA	NA	143153775	143111463	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140912_143142228_143142315_143146148_143146288_143153718
104491	chr4	+	3413	10	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	-8	multi-exon	FALSE	non_canonical	0	0	junction_1	14.4564053042583	1	137	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTCAACAAGTTTGCTT	924	False	NA	NA	False	NA	NA	NA	145237358	145351903	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_145237525_145239475_145239644_145243730_145243846_145295287_145295379_145299195_145300051_145322279_145322345_145343687_145343750_145347127_145347255_145348721_145348860_145350277
104492	chr17	-	2113	11	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-232	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	4185.87198084222	1	63	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45882740	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879171_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882005_45882056_45882104_45882338_45882546_45882690
104493	chr11	+	1609	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-35	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	1114.85071169866	10	39	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5371	False	NA	NA	False	NA	NA	NA	52251926	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267487_52274804_52274905_52276409_52276561_52278242_52278301_52279258
104494	chr4	-	2432	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	17	63736	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.201572947855	1	109	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCATTTTGTATATTTTT	NA	False	NA	NA	False	NA	NA	NA	146994030	146912416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_146913210_146914081_146914412_146976287_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993874
104495	chr11	-	1248	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-65	-181	-65	181	mono-exon	FALSE	NA	NA	NA	NA	NA	1	36	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4396	False	NA	NA	False	NA	NA	NA	20286078	20284830	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
104496	chr17	+	4917	12	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	67.1406565993738	46	73	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9389	False	NA	NA	False	NA	NA	NA	36152566	36170562	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36152658_36155323_36155460_36156730_36157108_36157193_36157270_36158214_36159208_36159247_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164593_36169828
104497	chr17	+	2849	9	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	-2315	2334	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	55.4694454181759	1	143	6	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGACCCCAGAACCACTTA	NA	False	NA	NA	False	NA	NA	NA	36157077	36163845	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36157112_36157193_36157270_36158214_36159558_36159680_36159750_36159898_36159992_36161186_36161517_36161576_36161898_36162004_36162049_36163306
104498	chr17	-	6217	16	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	0	1	220	5	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTCTTCTTCAGCATCC	NA	False	NA	NA	False	NA	NA	NA	36170552	36155372	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36155466_36156744_36157111_36157192_36157269_36158215_36159557_36159679_36159750_36159897_36159990_36161184_36161895_36162001_36162032_36163299_36164779_36164910_36165003_36165092_36165219_36165312_36165490_36165745_36165872_36165989_36166101_36168352_36168955_36169826
104499	chr11	+	3924	24	NNC	ENSMUSG00000040463.17	novel	4358	26	NA	NA	7	-218	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	1023.84592967529	1	153	10	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGACGCCAATCTCTGACT	NA	False	NA	NA	False	NA	NA	NA	72332189	72342376	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_72332402_72332503_72332600_72333412_72333471_72333588_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337105_72337974_72338127_72338378_72338466_72338568_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
104500	chr4	+	2131	5	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	14	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	42.2551771975932	1	70	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147637747	147669650	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147637884_147639766_147639843_147665693_147665826_147667290_147667436_147668008
104503	chr6	-	1180	1	ISM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	13741	16	4172	1	mono-exon	FALSE	NA	NA	NA	NA	NA	78	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCATGTCACAAGCTT	NA	False	NA	NA	False	NA	NA	NA	122705963	122704783	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_-_122704800_122706000
104504	chrM	+	1834	1	FSM	ENSMUSG00000064367.1	ENSMUST00000082418.1	1824	1	207	-217	207	217	mono-exon	FALSE	NA	NA	NA	NA	NA	6	2	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCCCCAATACTAAAAAAC	203	False	NA	1	True	NA	NA	NA	11948	13782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrM_+_11900_13800
104505	chr19	-	1944	13	NNC	ENSMUSG00000024966.10	novel	2108	14	NA	NA	4301	-27	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	933.393807564631	1	44	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAGTCAGGCGTGGTTA	8064	False	NA	NA	False	NA	NA	NA	7013034	6998096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_6998540_6999017_6999181_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863
104506	chr1	+	1939	11	Antisense	novelGene_ENSMUSG00000025980.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	49	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCGAAGCATTTCTGGGGA	NA	False	NA	NA	False	NA	NA	NA	55117218	55126087	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr1_+_55117598_55117685_55117864_55118211_55118388_55119258_55119505_55120229_55120334_55120820_55120990_55121218_55121310_55122224_55122320_55122881_55122965_55123689_55123944_55125923
104507	chr11	+	1401	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	419	-73	187	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	1	29	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCTGTTTTACACCAAAA	5333	False	NA	NA	False	NA	NA	NA	52251888	52279805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
104508	chr6	-	2011	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	9	65	9	-65	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	5	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTGGGTTTTTTGTTTGT	NA	False	NA	NA	False	NA	NA	NA	83294579	83282737	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
104509	chr4	+	1803	7	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	1	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	74.2443413481608	2	77	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033868	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146034017_146041696_146041784_146043550_146043631_146054375_146054480_146058453_146058581_146060726_146060843_146062053
104510	chr12	+	2226	7	Antisense	novelGene_ENSMUSG00000021270.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	2	59	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGAAATTTACCCTGTA	NA	False	NA	NA	False	NA	NA	NA	110657479	110660974	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_110658088_110658551_110658872_110659028_110659300_110659449_110659602_110659745_110659937_110660144_110660311_110660456
104511	chr4	+	2554	3	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	15925	-271	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	269	1	120	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTATATTTAATTTAAATA	2624	False	NA	NA	False	NA	NA	NA	145257378	145265487	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145257462_145261368_145261513_145263160
104513	chr4	+	2742	5	Intergenic	novelGene_2081	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	25.5477494116409	1	147	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146370026	146393561	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146370154_146384322_146384431_146388486_146388596_146390827_146391369_146391704
104514	chr4	+	2790	4	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-31	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	87.9886356298357	2	92	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033836	146063194	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146033991_146054438_146054480_146058453_146058581_146060726
104515	chr4	+	2802	7	Intergenic	novelGene_2068	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	non_canonical	0	0	junction_1	45.8354544963709	1	129	5	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAACTAACTCCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	146365095	146393524	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_146365259_146368131_146368209_146384326_146384431_146388486_146388614_146390758_146391587_146391933_146392609_146392696
104516	chr4	+	2841	4	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4290	-3	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	76.4852927038918	1	146	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAATTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	146038204	146063188	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146054375_146054480_146058453_146058581_146060726
104517	chr4	+	2693	4	NNC	ENSMUSG00000066009.9	novel	410	4	NA	NA	4248	-193	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	76.4852927038918	1	77	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATAAGATGAAGATAAGTTA	NA	False	NA	NA	False	NA	NA	NA	146038162	146062998	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_146038353_146054375_146054480_146058453_146058581_146060726
104519	chr12	-	1299	7	ISM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	428	1	-366	-1	3prime_fragment	FALSE	canonical	3	7551	junction_6	330.068890115718	138	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTGAGTGTTGCTTCTC	NA	False	NA	NA	False	NA	NA	NA	111638344	111635795	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199
104520	chr4	+	2091	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	4868	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	76.1162761832185	1	30	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCTTTGGTTGTTTCCA	NA	False	NA	NA	False	NA	NA	NA	147394998	147418190	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_147395147_147409230_147409335_147413438_147413566_147415724_147416528_147417281
104521	chr12	+	2291	12	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	187.962674332296	1	79	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACTAAAAAAAGTGTGAAGT	2865	False	NA	NA	False	NA	NA	NA	109612563	109628139	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179_109627916_109627988
104522	chr12	+	2347	11	NNC	ENSMUSG00000097451.12	novel	2368	11	NA	NA	0	-9	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	248.250055387708	1	99	7	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTATGACTAAAAAAAGTGT	2865	False	NA	NA	False	NA	NA	NA	109612563	109628134	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624551_109626156_109626235_109627179
104523	chr2	-	1363	9	NNC	ENSMUSG00000074656.13	novel	2542	9	NA	NA	51	-949	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	5712.48259160367	1	64	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAACAACAAACTTGATT	3836	False	NA	NA	False	NA	NA	NA	154734651	154714286	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_-_154714821_154715468_154715544_154718535_154718593_154719597_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
104524	chr2	+	2944	14	NNC	ENSMUSG00000026926.15	novel	3135	13	NA	NA	21	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	420.408113918512	1	102	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTAGAGTGGATGCCCCT	682	False	NA	NA	False	NA	NA	NA	26279388	26287128	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430_26285613_26285759
104525	chr4	-	5153	6	Intergenic	novelGene_2124	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	15.6537535434796	5	197	3	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGCATTTTGTATATTTT	NA	False	NA	NA	False	NA	NA	NA	146988198	146912417	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_-_146913095_146913202_146914904_146917069_146917197_146921028_146921137_146924527_146926148_146987278
104526	chr17	+	1659	12	NNC	ENSMUSG00000068039.14	novel	2446	12	NA	NA	73	18695	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1707.74297909393	1	90	4	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGTTCCTGTCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	13135434	13162649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_13135517_13136893_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142127_13142287_13142431_13142581_13143146_13143354_13162570
104528	chr7	+	1383	9	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2413	-18080	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	38	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGAGAACGCAGCCTATTC	NA	False	NA	NA	False	NA	NA	NA	126394426	126398321	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395931_126396028_126396078_126396505_126396720_126396814_126396953_126398222
104529	chr1	+	3386	14	NNC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	122.99319267255	1	110	6	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAAACCACAAGTATAC	NA	False	NA	NA	False	NA	NA	NA	132405107	132433389	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418216_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424595_132424767_132425667_132425746_132431501
104530	chr11	+	1758	9	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-45	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	1113.18292943029	1	47	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5361	False	NA	NA	False	NA	NA	NA	52251916	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267247_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
104532	chr5	-	2810	19	NNC	ENSMUSG00000106864.4	novel	4552	19	NA	NA	0	31	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	260.499567545434	1	128	9	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATCCCTCTCCTTCCAC	NA	False	NA	NA	False	NA	NA	NA	31337253	31314756	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317047_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327248_31327523_31327613_31330125_31330406_31331111_31331355_31331575_31331840_31337227
104533	chr5	+	2785	17	Antisense	novelGene_ENSMUSG00000106864.4_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	119	11	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCACAGAGATACAGCAACG	NA	False	NA	NA	False	NA	NA	NA	31314780	31331840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_31315108_31315478_31315598_31315689_31315840_31316404_31316534_31316777_31316862_31317050_31317206_31317291_31317429_31323226_31323360_31325026_31325148_31325331_31325448_31325597_31325823_31326394_31326478_31327181_31327262_31327525_31327619_31330125_31330393_31331132_31331436_31331577
104534	chr11	-	3480	15	NNC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	-3	-41	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	361.289110586759	1	166	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTCTGTATCTACTCA	NA	False	NA	NA	False	NA	NA	NA	95201030	95165125	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_-_95166714_95167268_95167376_95168294_95168442_95171212_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180687_95182345_95182445_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
104535	chr2	-	425	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11329	160	multi-exon	FALSE	non_canonical	0	0	junction_1	0	11	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATAAAGTTCGCTGCACC	NA	False	NA	NA	False	NA	NA	NA	11426170	11413681	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11413922_11425985
104536	chr4	-	1181	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-107	-72	107	mono-exon	FALSE	NA	NA	NA	NA	NA	2	24	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCATAATAACAGGAGGGGC	NA	False	NA	NA	False	NA	NA	NA	91740978	91739797	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739800_91741000
104538	chr19	+	898	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	24	7	24	-1	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	468	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTCTTTTCTTTGTGAT	4893	False	NA	NA	False	NA	NA	NA	9960033	9962455	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
104539	chr17	+	3060	4	Intergenic	novelGene_40	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	115	junction_3	58.5168541723	800	16	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGAAAAGTAGAAGCCCCA	NA	False	NA	NA	False	NA	NA	NA	17399470	17427308	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr17_+_17399714_17422956_17423084_17423325_17423387_17424679
104540	chr16	+	2333	8	NIC	ENSMUSG00000022884.17	novel	1238	12	NA	NA	0	-13	intron_retention	FALSE	canonical	3	563	junction_2	494.945142291094	1	55	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGGGGGTCGATTTGGG	6053	False	NA	NA	False	NA	NA	NA	22926507	22931921	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr16_+_22926571_22927337_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566
104541	chr8	-	4203	12	NIC	ENSMUSG00000038225.16	novel	1833	14	NA	NA	-4	-7	intron_retention	FALSE	canonical	3	19	junction_9	47.8964102590422	3	55	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAATATATGTGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	47070251	47029203	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47052753_47052902_47058119_47058250_47063474_47063661_47065404_47065482_47070168
104542	chr4	-	2449	14	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	450.792871524996	1	105	8	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484690	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469232_116471526_116471608_116476066_116476178_116484516
104543	chr4	-	2534	15	ISM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	446	0	-2	0	3prime_fragment	FALSE	canonical	3	774	junction_12	215.450595691155	1	80	8	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484692	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
104544	chr4	-	1517	13	NNC	ENSMUSG00000028693.16	novel	2520	16	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	524.036649216658	2	64	6	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	NA	False	NA	NA	NA	116484693	116458805	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461517_116462041_116462192_116462880_116462961_116469168_116469279_116471526_116471603_116476062_116476178_116479963_116480012_116484528
104545	chr7	-	3187	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	-10	4818	-10	24	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	1	82	3	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAGTAAGGTTTCCTTCT	NA	False	NA	NA	False	NA	NA	NA	110682247	110671774	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
104546	chr1	-	2249	12	NNC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	2797.35779112545	1	102	5	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4396	False	NA	NA	False	NA	NA	NA	55127242	55116993	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr1_-_55117585_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121299_55122221_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
104547	chr14	+	4045	19	NNC	ENSMUSG00000021806.5	novel	4876	21	NA	NA	25	-1751	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	375.113781092393	1	237	12	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACCTCAATTACCCCTTC	NA	False	NA	NA	False	NA	NA	NA	19801376	19860104	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr14_+_19801634_19802308_19802618_19813733_19813967_19818282_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047
104548	chrX	-	1737	5	NNC	ENSMUSG00000031422.17	novel	1859	4	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1329.68574764867	1	84	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAGCAAAAAAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	135642027	135633707	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chrX_-_135633998_135634039_135635251_135636294_135636372_135640553_135640644_135641958
104549	chr14	+	881	1	FSM	ENSMUSG00000044285.9	ENSMUST00000111388.5	685	1	-101	-95	-1	-93	mono-exon	FALSE	NA	NA	NA	NA	NA	1	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATAGCTGAACCTCTGTTA	NA	False	NA	NA	False	NA	NA	NA	46321483	46322364	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr14_+_46321500_46322400
104550	chr5	+	2408	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4938	20	intron_retention	FALSE	canonical	0	0	junction_4	788.55416647773	1	67	3	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCTGTAAATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	108208601	108255356	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241270_108241990_108242115_108246984_108247057_108251905_108251992_108252131_108252185_108252291_108252397_108254453
104551	chr7	+	974	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-17	275	-17	-275	mono-exon	FALSE	NA	NA	NA	NA	NA	2	22	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACTTTGTCAAGCTCATT	NA	False	NA	NA	False	NA	NA	NA	51396377	51397351	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397400
104552	chr13	-	6615	22	Intergenic	novelGene_1379	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	160	9	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCGCCTCCTCCTCCTCACA	NA	False	NA	NA	False	NA	NA	NA	55458289	55359622	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_55359818_55361018_55361964_55381707_55381842_55386500_55386672_55393326_55395889_55408154_55408280_55409354_55409629_55411147_55411254_55416258_55416350_55424342_55424453_55425342_55425487_55430469_55430593_55437864_55438067_55438941_55439122_55441368_55441522_55443790_55444004_55446374_55446493_55447505_55447767_55449536_55449657_55450651_55450798_55454752_55454853_55458147
104553	chr17	-	3431	9	Antisense	novelGene_ENSMUSG00000061607.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	115	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATCCGCGCGCGCGCGCC	4896	False	NA	NA	False	NA	NA	NA	36163643	36152567	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_-_36152659_36155321_36155461_36156728_36157114_36157194_36157268_36158212_36159550_36159677_36159990_36161184_36161895_36162001_36162048_36163305
104554	chr17	+	6260	16	NNC	ENSMUSG00000061607.16	novel	7335	16	NA	NA	2755	-10	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	64.4638055207899	1	81	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTACTTTATATTTTCCTG	NA	False	NA	NA	False	NA	NA	NA	36155322	36170552	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_+_36155456_36156740_36157103_36157193_36157270_36158214_36159558_36159683_36159750_36159898_36159992_36161186_36161898_36162004_36162049_36163306_36164781_36164912_36165005_36165094_36165215_36165308_36165492_36165747_36165874_36165991_36166103_36168354_36168953_36169824
104555	chr10	+	2167	3	Antisense	novelGene_ENSMUSG00000112309.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	90	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCGGAAATACAGCTTTGG	2970	False	NA	NA	False	NA	NA	NA	62675291	62715192	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_+_62676160_62700602_62700636_62713926
104556	chr1	+	1313	1	Intergenic	novelGene_483	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGCTACTCGGGGCGCCAT	NA	False	NA	NA	False	NA	NA	NA	171140857	171142170	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr1_+_171140900_171142200
104557	chr4	+	2018	8	Fusion	ENSMUSG00000078496.10_ENSMUSG00000078497.10_ENSMUSG00000065999.14	novel	1244	3	NA	NA	1505	-8	multi-exon	TRUE	non_canonical	0	0	junction_1	117.925434759704	1	112	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAACAAGTTTGCTTTGGT	3882	False	NA	NA	False	NA	NA	NA	147447272	147669647	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_147447331_147592042_147592083_147595196_147595337_147596801_147596997_147597081_147597110_147598616_147598802_147668107_147668422_147668589
104558	chr11	+	2011	10	NNC	ENSMUSG00000020402.12	novel	951	10	NA	NA	-118894	-45	intron_retention	TRUE	non_canonical	0	0	junction_1	1681.22012571558	1	87	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTGCTCGATGGCAAGAA	NA	False	NA	NA	False	NA	NA	NA	52132792	52279278	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52132823_52251881_52251980_52265123_52265196_52265744_52265795_52267214_52267371_52267474_52267528_52274676_52274905_52276409_52276594_52277180_52278301_52279258
104559	chr11	+	1812	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	202	8	-73	-8	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	242	56	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCTCATCCTCTTGTTGT	5333	False	NA	NA	False	NA	NA	NA	52251888	52280216	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
104560	chr11	+	4358	27	NNC	ENSMUSG00000020527.15	novel	4091	25	NA	NA	9	5132	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	60.2796859028345	1	137	17	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCTCACTCTTTTACCT	NA	False	NA	NA	False	NA	NA	NA	84773420	84807184	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_84773554_84776027_84776167_84776496_84776646_84778883_84778994_84782901_84783035_84785375_84785479_84786093_84786191_84786303_84786381_84787946_84788038_84788374_84788547_84790202_84790277_84791021_84791144_84791299_84791414_84791667_84791845_84792176_84792330_84792925_84793034_84793982_84794054_84796365_84796470_84798061_84798229_84798331_84798462_84799045_84799132_84800079_84800380_84801218_84802473_84804045_84804129_84805036_84805112_84806924_84806959_84807082
104561	chr10	+	1318	1	Intergenic	novelGene_3420	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	49	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTTTCTCTTGGTGA	NA	False	NA	NA	False	NA	NA	NA	30048219	30049537	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr10_+_30048200_30049500
104562	chr5	+	1513	10	ISM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	34358	15527	-1300	2171	internal_fragment	FALSE	canonical	3	795	junction_7	151.616312357343	2	39	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTGAAGATGCTCAAACG	NA	False	NA	NA	False	NA	NA	NA	75769933	75801855	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr5_+_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769
104563	SIRV5	+	1716	12	NNC	SIRV5A	novel	2029	16	NA	NA	2316	1	intron_retention	FALSE	non_canonical	0	0	junction_6	2763.02587156584	1	77	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTACCGCCAAAAAATGG	NA	False	NA	NA	False	NA	NA	NA	3372	10990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_SIRV5_+_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6464_6798_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
104564	chr17	-	778	3	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	4317	3	782	-3	3prime_fragment	FALSE	canonical	3	10930	junction_2	637.5	391	6	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	-67	True	NA	NA	NA	45879880	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783
104565	chr6	-	2256	10	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	104	5	combination_of_known_splicesites	FALSE	canonical	3	19	junction_8	1266.44691076167	2	78	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGATTTGAATCTTAAT	8589	False	NA	NA	False	NA	NA	NA	145021806	144944878	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144993017_144993090_145021614
104566	chr12	+	1631	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	251	-590	251	-10	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	1	3	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAAAATAACTCCATGTTC	NA	False	NA	NA	False	NA	NA	NA	72132881	72148225	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
104567	chr13	+	2705	5	NNC	ENSMUSG00000095909.3	novel	1525	4	NA	NA	-25	872	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	91.7234293951115	1	149	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTGTCACTGTACTCT	NA	False	NA	NA	False	NA	NA	NA	66261268	66271522	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr13_+_66261375_66267450_66267578_66267777_66267839_66269026_66269602_66269686
104568	chr19	-	4313	7	NNC	ENSMUSG00000037071.4	novel	4832	6	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	254.682809261507	5	55	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	7435	False	NA	NA	False	NA	NA	NA	44396153	44382893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr19_-_44383079_44383602_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
104569	chr8	+	2743	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-9	-2193	multi-exon	FALSE	non_canonical	0	0	junction_2	553.985703786659	1	105	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAGCGTACACTCAAAGAC	NA	False	NA	NA	False	NA	NA	NA	19834752	20043695	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr8_+_19834867_20030550_20030625_20030671_20030924_20035860_20036160_20039783_20039904_20041811
104570	chr18	+	601	5	FSM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	6	-5	6	0	multi-exon	FALSE	canonical	3	252	junction_1	11592.6756914657	319	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	5	True	NA	NA	NA	60907758	60911618	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr18_+_60907854_60909472_60909624_60910001_60910164_60910884_60910962_60911502
104571	chr4	+	3281	5	Fusion	ENSMUSG00000063245.12_ENSMUSG00000056300.15	novel	578	4	NA	NA	-25	62198	multi-exon	FALSE	canonical	0	0	junction_1	192.614251809154	1	138	3	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATCCTATCTTGTTTTTA	NA	False	NA	NA	False	NA	NA	NA	146599351	146804815	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Fusion_chr4_+_146599500_146697966_146698064_146797236_146797381_146800390_146800518_146802050
104573	chr15	-	2046	1	Intergenic	novelGene_3262	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	129	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAAACTTTAAACCCTTCA	9812	False	NA	NA	False	NA	NA	NA	22705078	22703032	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr15_-_22703000_22705100
104574	chr4	+	5046	2	Intergenic	novelGene_1882	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	114	1	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGACCCGTTTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	66820670	66825835	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr4_+_66820779_66820897
104575	chr6	-	3425	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	338	196	-17	-179	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	1	88	4	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACTCAGATTGCTATG	9028	False	NA	NA	False	NA	NA	NA	122719366	122704963	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
104577	chr10	-	2495	11	Antisense	novelGene_ENSMUSG00000019823.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	47	5	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGCATTTAAGGCCAGGCA	NA	False	NA	NA	False	NA	NA	NA	41361065	41355990	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr10_-_41356380_41357127_41357379_41357578_41357701_41357895_41358019_41358198_41358284_41358597_41359623_41359706_41359797_41360158_41360248_41360369_41360528_41360727_41360802_41360976
104578	chr5	-	1041	1	FSM	ENSMUSG00000094708.2	ENSMUST00000180167.2	1002	1	-49	10	-49	-10	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGAGTAAGAAACCCTGG	NA	False	NA	NA	False	NA	NA	NA	106011617	106010576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_106010600_106011600
104579	chr19	+	3043	3	Intergenic	novelGene_1219	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_2	1714	50	85	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTCCCTGTGGCTCCATGT	1177	False	NA	NA	False	NA	NA	NA	22699835	22703244	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr19_+_22700550_22700763_22702504_22702655
104580	chr5	+	2204	3	Genic_Genomic	ENSMUSG00000072612.4	novel	1233	1	NA	NA	-3322	-800	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	85	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCGGCACGCCCGGCGT	8678	False	NA	NA	False	NA	NA	NA	125463063	125466818	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_+_125463075_125463193_125465332_125466763
104581	chr12	+	4248	14	Antisense	novelGene_ENSMUSG00000047534.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	83	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCGTGATGCTCCGCGG	NA	False	NA	NA	False	NA	NA	NA	65179506	65219586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr12_+_65180402_65180579_65180628_65183519_65183626_65185420_65185571_65187506_65187663_65189995_65190167_65195495_65196325_65199461_65199604_65200578_65200667_65201491_65201624_65203765_65203839_65205167_65205636_65208176_65208805_65219224
104582	chr13	-	3475	1	Intergenic	novelGene_1455	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	26	16	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGCTCTCTCCCGTTTC	NA	False	NA	NA	False	NA	NA	NA	66934786	66931311	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Intergenic_chr13_-_66931300_66934800
104583	chr7	+	1931	2	Antisense	novelGene_ENSMUSG00000051340.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	98	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCAAAAAAGACAAGGAGGG	NA	False	NA	NA	False	NA	NA	NA	103682386	103771676	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr7_+_103682662_103770020
104584	chr11	-	1246	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-71	-173	-71	173	mono-exon	FALSE	NA	NA	NA	NA	NA	1	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	4390	False	NA	NA	False	NA	NA	NA	20286084	20284838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
104586	chr9	-	1199	5	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1723	4	-285	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1660.48372093797	1	33	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8823	False	NA	NA	False	NA	NA	NA	78387283	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133
104587	chr2	-	763	3	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11236	186	multi-exon	FALSE	non_canonical	0	0	junction_1	0	129	17	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	11426077	11413655	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11413668_11413731_11414204_11425798
104588	chr17	-	2274	10	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	1361	140	-328	-140	3prime_fragment	FALSE	canonical	3	9221	junction_4	1036.97658818531	2	42	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGTCCTGTGCCTTAAG	NA	False	NA	NA	False	NA	NA	NA	45882836	45878840	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
104589	chr9	+	2028	8	ISM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	932	3	-426	-2	3prime_fragment	FALSE	canonical	3	3928	junction_2	6440.2006179932	19	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATACAGTTGTCCTGACTG	3099	False	NA	NA	False	NA	NA	NA	40713211	40716493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_+_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
104590	chrX	-	1250	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	-178	-73	178	mono-exon	FALSE	NA	NA	NA	NA	NA	8	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CACCCACAAAACAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79238531	79237281	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237300_79238500
104591	chr2	+	1050	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11308	65	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	37	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCCTCAGTTGCTGAGGA	NA	False	NA	NA	False	NA	NA	NA	11413726	11426096	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414304_11425623
104592	chr5	+	1251	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-69	-180	-69	180	mono-exon	FALSE	NA	NA	NA	NA	NA	3	68	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96009503	96010754	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
104593	chr6	+	560	1	FSM	ENSMUSG00000042079.14	ENSMUST00000180341.2	1922	1	1356	6	1356	-3	mono-exon	FALSE	NA	NA	NA	NA	NA	1	23	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGACTGGCACAGCTTAT	1560	False	NA	NA	False	NA	NA	NA	117902017	117902577	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117902000_117902600
104594	chr2	-	1242	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	-67	-175	-67	175	mono-exon	FALSE	NA	NA	NA	NA	NA	2	58	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	28824688	28823446	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823400_28824700
104595	chr10	+	2505	14	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	15	-51	intron_retention	FALSE	non_canonical	0	0	junction_11	1952.57705300687	1	52	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCAGCCGCCCCAGCCA	2196	False	NA	NA	False	NA	NA	NA	81012479	81017817	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016834_81016957_81017245_81017326_81017460_81017722
104597	chr6	+	6589	11	Antisense	novelGene_ENSMUSG00000040669.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	9	111	2	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGAGGGGGGGGGGGTCGC	685	False	NA	NA	False	NA	NA	NA	122294864	122316611	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr6_+_122295606_122296274_122296506_122296854_122297283_122297896_122299431_122299965_122302908_122309478_122309637_122310249_122310400_122311028_122311112_122311933_122312042_122313815_122313974_122316555
104598	chr2	+	1204	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11374	205	multi-exon	FALSE	non_canonical	0	0	junction_1	0	109	22	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGCTGCAACCCCCCCC	NA	False	NA	NA	False	NA	NA	NA	11413660	11426236	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414503_11425874
104599	chr5	-	2112	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-75	-96	-75	96	mono-exon	FALSE	NA	NA	NA	NA	NA	65	13	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833630	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
104600	chr6	+	2069	5	NNC	ENSMUSG00000042079.14	novel	538	5	NA	NA	-2	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	2095.02124094244	2	33	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAATGACTGGCACAGCT	3732	False	NA	NA	False	NA	NA	NA	117883753	117902574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668_117902396_117902469
104601	chr10	+	1087	7	NNC	ENSMUSG00000034994.11	novel	3089	14	NA	NA	1025	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	2497.39762886623	1	6	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATGTGCTCGCAACTCTG	3206	False	NA	NA	False	NA	NA	NA	81013489	81018328	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr10_+_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015495_81018261
104602	chrX	-	1181	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	1	-183	1	183	mono-exon	FALSE	NA	NA	NA	NA	NA	1	66	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAACAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	79238457	79237276	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237300_79238500
104603	chr17	-	2025	9	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-331	-478	intron_retention	FALSE	canonical	0	0	junction_6	4510.99859891078	1	5	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCGCATGATTAAACTAGGC	NA	False	NA	NA	False	NA	NA	NA	45882839	45879178	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45879489_45879783_45880053_45880165_45880314_45880395_45880740_45881183_45881493_45881591_45881721_45881943_45882104_45882338_45882546_45882690
104604	chr5	+	1263	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	-72	-189	-72	189	mono-exon	FALSE	NA	NA	NA	NA	NA	4	43	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	96009500	96010763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009500_96010800
104606	chr15	-	1606	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	163	84	99	-84	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	1255	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTCTGCAGTTACT	12	True	NA	NA	False	NA	NA	NA	31601787	31591029	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
104608	chr5	+	1149	1	FSM	ENSMUSG00000096617.4	ENSMUST00000180755.2	1002	1	42	-189	42	189	mono-exon	FALSE	NA	NA	NA	NA	NA	4	11	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	96009614	96010763	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_+_96009600_96010800
104609	chr4	+	1177	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	29	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTCTTCTTAAAATG	NA	False	NA	NA	False	NA	NA	NA	91739801	91740978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91739800_91741000
104610	chr6	-	985	4	Genic_Genomic	ENSMUSG00000107608.2	novel	1192	1	NA	NA	-6682	8749	multi-exon	FALSE	non_canonical	0	0	junction_1	13.6707311029399	34	2	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGGCGGAGCCGTCCCGC	6392	False	NA	NA	False	NA	NA	NA	117901365	117884742	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr6_-_117884839_117894428_117894557_117896057_117896126_117900672
104611	chr2	+	660	1	Antisense	novelGene_ENSMUSG00000083773.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTGTGGTCATGAGCC	NA	False	NA	NA	False	NA	NA	NA	28823430	28824090	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_28823400_28824100
104612	chr11	-	1264	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-73	-189	-73	189	mono-exon	FALSE	NA	NA	NA	NA	NA	8	48	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGCCTT	4388	False	NA	NA	False	NA	NA	NA	20286086	20284822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
104613	chr9	-	1221	5	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1701	4	-307	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1660.48372093797	1	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8801	False	NA	NA	False	NA	NA	NA	78387305	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133
104614	chr5	+	1131	1	Antisense	novelGene_ENSMUSG00000094708.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	3	41	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAGAAGATGTGGCTGT	NA	False	NA	NA	False	NA	NA	NA	106010463	106011594	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_+_106010500_106011600
104616	chr5	-	2115	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-78	-96	-78	96	mono-exon	FALSE	NA	NA	NA	NA	NA	566	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833633	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
104617	chr11	+	1185	1	Antisense	novelGene_ENSMUSG00000078965.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	26	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGGAACAGGGAGGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	20284876	20286061	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20284900_20286100
104618	chr15	+	541	1	FSM	ENSMUSG00000078300.4	ENSMUST00000100754.5	1002	1	-74	535	-74	-535	mono-exon	FALSE	NA	NA	NA	NA	NA	2	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCTGGCCAAGGTCATCC	88	False	NA	NA	False	NA	NA	NA	12574900	12575441	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr15_+_12574900_12575400
104619	chr7	-	1387	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	113	11	0	-9	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	7	5	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGGGGGAGTCTGTTGT	NA	False	NA	NA	False	NA	NA	NA	126398313	126394416	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
104620	chr7	+	1237	8	NNC	ENSMUSG00000058966.14	novel	1915	9	NA	NA	-2426	-19509	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	2	17	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCCGGGGTCAGTGCTGG	NA	False	NA	NA	False	NA	NA	NA	126394413	126396892	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_+_126394686_126394783_126394988_126395124_126395295_126395386_126395475_126395768_126395927_126396024_126396078_126396505_126396720_126396814
104621	chr9	-	644	2	ISM	ENSMUSG00000076138.3_ENSMUSG00000037742.15	ENSMUST00000129380.2	845	3	521	-231	306	-4	3prime_fragment	FALSE	canonical	3	15409	junction_1	0	12	5	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	9629	False	NA	NA	False	NA	NA	NA	78386477	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239
104622	chr6	+	778	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-10	1379	-5	-142	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	13	12	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGTTAGCTGAGAAAGCT	3724	False	NA	NA	False	NA	NA	NA	117883745	117901201	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
104623	chr2	+	1905	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11386	216	multi-exon	FALSE	canonical	0	0	junction_1	0	74	35	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCCCCCCCACTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	11413648	11426247	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414580_11425273
104624	chr7	+	1264	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-18	-14	-18	14	mono-exon	FALSE	NA	NA	NA	NA	NA	11	41	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGAGGCTC	NA	False	NA	NA	False	NA	NA	NA	51396376	51397640	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
104625	chr11	-	1054	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	55	-107	55	107	mono-exon	FALSE	NA	NA	NA	NA	NA	2	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	4516	False	NA	NA	False	NA	NA	NA	20285958	20284904	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284900_20286000
104626	chr11	-	746	2	Genic_Genomic	ENSMUSG00000078965.6	novel	1002	1	NA	NA	-73	187	multi-exon	FALSE	non_canonical	0	0	junction_1	0	546	2	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGAAGCC	4388	False	NA	NA	False	NA	NA	NA	20286086	20284824	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr11_-_20285066_20285581
104627	chr17	-	2190	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-257	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	3336.13992216258	2	8	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45882765	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879171_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
104628	chr11	-	1236	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-61	-173	-61	173	mono-exon	FALSE	NA	NA	NA	NA	NA	3	51	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CACCCAAAAAAAAAAAAAAA	4400	False	NA	NA	False	NA	NA	NA	20286074	20284838	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
104629	chr9	+	1667	8	Antisense	novelGene_ENSMUSG00000076138.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	4	75	3	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACGTCCAAGGCGACT	NA	False	NA	NA	False	NA	NA	NA	78385762	78388949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr9_+_78386108_78386233_78386509_78386600_78386814_78386908_78387057_78387133_78387433_78387524_78387710_78387797_78387968_78388917
104631	chr2	-	625	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-10982	181	multi-exon	FALSE	canonical	0	0	junction_1	0	10	2	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	11425823	11413660	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414192_11425729
104632	chr7	-	1023	6	NNC	ENSMUSG00000030695.17	novel	1511	9	NA	NA	316	-1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	8171.27204295635	2	23	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTCTGTTGTTCATGTCT	131	False	NA	NA	False	NA	NA	NA	126396607	126394408	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396482
104633	chr5	-	2103	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-83	-79	-83	79	mono-exon	FALSE	NA	NA	NA	NA	NA	180	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833638	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
104634	chr2	-	912	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-11041	192	multi-exon	FALSE	non_canonical	0	0	junction_1	0	1	11	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	11425882	11413649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414319_11425639
104635	chr2	+	1017	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11389	-43	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	7	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTACAGCAACAGGGTGGT	NA	False	NA	NA	False	NA	NA	NA	11413645	11425988	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414319_11425644
104636	chr2	+	1042	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11390	-22	multi-exon	FALSE	non_canonical	0	0	junction_1	0	5	21	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACCAACCTCATGGTCT	NA	False	NA	NA	False	NA	NA	NA	11413644	11426009	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414298_11425620
104637	chr2	+	1094	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11385	-395	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	12	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGCCAAGAGCATCATCC	NA	False	NA	NA	False	NA	NA	NA	11413649	11425636	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414520_11425412
104638	chr2	+	790	2	Genic_Genomic	ENSMUSG00000082314.3	novel	997	1	NA	NA	-11369	-249	multi-exon	FALSE	canonical	0	0	junction_1	0	2	3	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATCTGCCAAGTATGAT	NA	False	NA	NA	False	NA	NA	NA	11413665	11425782	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_+_11414322_11425648
104639	chr9	-	1706	7	ISM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	1034	4	-2	-4	3prime_fragment	FALSE	canonical	3	11573	junction_3	1591.79487267256	214575	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTTGGTCAATGCTGA	8134	False	NA	-46	True	NA	NA	NA	78387972	78385734	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792
104640	chr9	+	2031	9	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	0	-74	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	7690.53829390375	2	19	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGGTGTAGCTTTGTTC	2459	False	NA	NA	False	NA	NA	NA	40712571	40716421	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715664_40715758_40715992_40716227
104641	chr11	+	660	1	Antisense	novelGene_ENSMUSG00000078965.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTGTGGTCATGAGCC	NA	False	NA	NA	False	NA	NA	NA	20284822	20285482	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20284800_20285500
104642	chr17	-	2263	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	12	245	-4	-245	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	7	12	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGCCTCCTGGAAGAA	NA	False	NA	NA	False	NA	NA	NA	45884185	45878945	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
104643	chr4	-	1258	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-65	-191	-65	191	mono-exon	FALSE	NA	NA	NA	NA	NA	10	54	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGAAGACAGA	NA	False	NA	NA	False	NA	NA	NA	91740971	91739713	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739700_91741000
104645	chr9	+	2071	9	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-3	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	7062.92189779662	20	14	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATACAGTTGTCCTGACTG	2456	False	NA	NA	False	NA	NA	NA	40712568	40716493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713889_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
104646	chrX	-	3288	4	Antisense	novelGene_ENSMUSG00000000787.13_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	193	34	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCACTAAATTCAAGTATTT	NA	False	NA	NA	False	NA	NA	NA	13160222	13156657	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chrX_-_13157293_13157401_13157540_13157649_13157921_13157978
104647	chr2	-	1020	1	FSM	ENSMUSG00000083773.5	ENSMUST00000121658.2	1000	1	89	-109	89	109	mono-exon	FALSE	NA	NA	NA	NA	NA	4	15	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAATAACAGGAGGGGCCT	NA	False	NA	NA	False	NA	NA	NA	28824532	28823512	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr2_-_28823500_28824500
104648	chr17	+	2293	11	Antisense	novelGene_ENSMUSG00000023944.15_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	12	9	1	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCGAACGCCCCCGACCGC	NA	False	NA	NA	False	NA	NA	NA	45878703	45884195	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr17_+_45878918_45879180_45879491_45879787_45880051_45880163_45880314_45880395_45880753_45881183_45881493_45881591_45881721_45881938_45882103_45882337_45882504_45882709_45882838_45884092
104649	chr7	+	1263	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-20	-11	-20	11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396374	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
104650	chr11	-	1239	1	FSM	ENSMUSG00000078965.6	ENSMUST00000180654.2	1002	1	-48	-189	-48	189	mono-exon	FALSE	NA	NA	NA	NA	NA	1	37	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAAGCCTT	4413	False	NA	NA	False	NA	NA	NA	20286061	20284822	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr11_-_20284800_20286100
104655	chr5	-	2099	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-79	-79	-79	79	mono-exon	FALSE	NA	NA	NA	NA	NA	72	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833634	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
104656	chr7	+	887	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	-21	366	-21	-366	mono-exon	FALSE	NA	NA	NA	NA	NA	2	18	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTACACTGAGGACCAGGT	NA	False	NA	NA	False	NA	NA	NA	51396373	51397260	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397300
104659	chr1	-	337	3	ISM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	183	6853	183	-155	5prime_fragment	FALSE	canonical	3	5679	junction_2	365.5	1	1	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATATTGGAGCTAAACTTG	4638	False	NA	NA	False	NA	NA	NA	55127000	55123846	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_55123945_55125924_55126101_55126937
104662	chrX	-	1116	1	FSM	ENSMUSG00000081221.5	ENSMUST00000121831.2	999	1	-73	-44	-73	44	mono-exon	FALSE	NA	NA	NA	NA	NA	7	5	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAGGCCCTATCCCAACT	NA	False	NA	NA	False	NA	NA	NA	79238531	79237415	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chrX_-_79237400_79238500
104663	chr17	-	2257	10	NNC	ENSMUSG00000023944.15	novel	2520	11	NA	NA	-331	-3	intron_retention	FALSE	non_canonical	0	0	junction_1	3336.13992216258	2	18	1	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTCCTGCTCTCCTTGT	NA	False	NA	NA	False	NA	NA	NA	45882839	45878703	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr17_-_45878918_45879178_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690
104664	chr11	+	655	1	Antisense	novelGene_ENSMUSG00000078965.6_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	0	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGACTGTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	20284822	20285477	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr11_+_20284800_20285500
104665	chr2	-	912	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-10994	192	multi-exon	FALSE	non_canonical	0	0	junction_1	0	6	8	1	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	11425835	11413649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414332_11425605
104666	chr1	-	485	3	ISM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	190	6698	190	0	5prime_fragment	FALSE	canonical	3	5679	junction_2	365.5	1	19	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGAGTATATCATTGATC	4645	False	NA	NA	False	NA	NA	NA	55126993	55123691	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr1_-_55123945_55125924_55126101_55126937
104668	chr2	-	1045	2	Genic_Genomic	ENSMUSG00000082424.5	novel	1000	1	NA	NA	-10759	192	multi-exon	FALSE	non_canonical	0	0	junction_1	0	16	7	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAAAAGT	103	False	NA	NA	False	NA	NA	NA	11425600	11413649	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr2_-_11414510_11425415
104670	chr7	+	1220	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	17	-5	17	5	mono-exon	FALSE	NA	NA	NA	NA	NA	9	31	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	51396411	51397631	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396400_51397600
104671	chr2	+	788	1	Antisense	novelGene_ENSMUSG00000083773.5_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	17	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTCACACCCATCACAAAC	NA	False	NA	NA	False	NA	NA	NA	28823430	28824218	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr2_+_28823400_28824200
104672	chr7	+	1155	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	88	-11	88	11	mono-exon	FALSE	NA	NA	NA	NA	NA	1	30	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGAGG	NA	False	NA	NA	False	NA	NA	NA	51396482	51397637	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr7_+_51396500_51397600
104673	chr5	-	2095	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-70	-84	-70	84	mono-exon	FALSE	NA	NA	NA	NA	NA	12	12	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833625	5831530	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
104674	chr4	-	1168	1	FSM	ENSMUSG00000095042.2	ENSMUST00000119266.2	1002	1	-73	-93	-73	93	mono-exon	FALSE	NA	NA	NA	NA	NA	2	35	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATCCCAGACCCCCATA	NA	False	NA	NA	False	NA	NA	NA	57372027	57370859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_57370900_57372000
104675	chr5	-	2028	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-8	-79	-8	79	mono-exon	FALSE	NA	NA	NA	NA	NA	32	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGCACCAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	5833563	5831535	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
104677	chr4	+	938	1	Antisense	novelGene_ENSMUSG00000095937.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	10	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAAGAAGATGCGGCTGT	NA	False	NA	NA	False	NA	NA	NA	91739994	91740932	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr4_+_91740000_91740900
104679	chr4	-	935	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	139	-72	-139	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTCTTCCACCTTCGATG	NA	False	NA	NA	False	NA	NA	NA	91740978	91740043	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91740000_91741000
104680	chr4	-	972	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-26	56	-26	-56	mono-exon	FALSE	NA	NA	NA	NA	NA	6	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGCTACAGCAACAGGGTG	NA	False	NA	NA	False	NA	NA	NA	91740932	91739960	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91740000_91740900
104683	chr4	-	1000	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	74	-72	-74	mono-exon	FALSE	NA	NA	NA	NA	NA	3	0	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGGTATGACAATGAATAC	NA	False	NA	NA	False	NA	NA	NA	91740978	91739978	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91740000_91741000
104684	chr8	+	1032	1	Antisense	novelGene_ENSMUSG00000110469.2_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	2	9	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGCCATGGGTGGAGTC	NA	False	NA	NA	False	NA	NA	NA	76131954	76132986	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr8_+_76132000_76133000
104686	chr7	-	4386	21	NIC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	3	0	intron_retention	FALSE	canonical	3	4823	junction_9	527.420553258972	5	42	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	NA	False	NA	NA	NA	110682234	110671138	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NIC_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110680172_110680713_110680841_110681991
104687	chr4	-	879	7	ISM	ENSMUSG00000028809.17	ENSMUST00000150619.9	4542	16	15062	2682	1	-1390	internal_fragment	FALSE	canonical	3	663	junction_2	216.016524573674	2	11	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCGAAGGGCATCACCAT	8189	False	NA	NA	False	NA	NA	NA	135065383	135052468	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114
104688	chr15	+	972	7	NNC	ENSMUSG00000003970.10	novel	851	6	NA	NA	7	1089	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	4309.86846924848	4	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAAGTTATTCTGTGGCA	NA	False	NA	NA	False	NA	NA	NA	76788284	76791603	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320_76790504_76791464
104689	chr5	-	2074	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-78	96	multi-exon	FALSE	non_canonical	0	0	junction_1	0	151	13	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833633	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5832730_5832770
104691	chr17	-	1229	6	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	2995	248	-540	-248	3prime_fragment	FALSE	canonical	3	9221	junction_4	1117.92046228701	1	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTAAAGCCTCCTGGAA	NA	False	NA	NA	False	NA	NA	NA	45881202	45878948	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183
104694	chr17	-	2266	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	5	249	5	-249	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	13	4	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGATTAAAGCCTCCTGGA	NA	False	NA	NA	False	NA	NA	NA	45884192	45878949	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
104696	chr5	-	1135	1	Antisense	novelGene_ENSMUSG00000096617.4_AS	novel	NA	NA	NA	NA	NA	NA	mono-exon	FALSE	NA	NA	NA	NA	NA	1	6	NA	NA	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGTGACCAGGCGCCC	NA	False	NA	NA	False	NA	NA	NA	96010763	96009628	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Antisense_chr5_-_96009600_96010800
104697	chr4	-	1085	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-11	-72	11	mono-exon	FALSE	NA	NA	NA	NA	NA	3	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCCACCCCAGCAAGGAC	NA	False	NA	NA	False	NA	NA	NA	91740978	91739893	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739900_91741000
104699	chr5	-	2115	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-78	-96	-78	96	mono-exon	FALSE	NA	NA	NA	NA	NA	172	9	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833633	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
104702	chr4	-	1129	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-55	-72	55	mono-exon	FALSE	NA	NA	NA	NA	NA	11	7	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAACTCGGCCCCCAACACT	NA	False	NA	NA	False	NA	NA	NA	91740978	91739849	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739800_91741000
104704	chr4	-	1087	1	FSM	ENSMUSG00000095937.2	ENSMUST00000119978.2	1002	1	-72	-13	-72	13	mono-exon	FALSE	NA	NA	NA	NA	NA	1	1	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACCCCAGCAAGGACAC	NA	False	NA	NA	False	NA	NA	NA	91740978	91739891	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr4_-_91739900_91741000
104705	chr5	-	2013	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-65	96	multi-exon	FALSE	non_canonical	0	0	junction_1	0	20	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833620	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	Genic_Genomic_chr5_-_5833057_5833145
104706	chr17	-	2512	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	2	6	2	-6	multi-exon	FALSE	canonical	3	9221	junction_4	988.252604347694	70543	6	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATACAGTCCTGCTCTCCT	NA	False	NA	NA	False	NA	NA	NA	45884195	45878706	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
104708	chr9	+	2085	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	292	17	0	-16	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	14	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAAATTGGCACCATAC	2459	False	NA	NA	False	NA	NA	NA	40712571	40716479	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
104709	chr5	-	2113	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	-76	-96	-76	96	mono-exon	FALSE	NA	NA	NA	NA	NA	74	16	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5833631	5831518	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr5_-_5831500_5833600
104710	chr11	+	1572	8	NNC	ENSMUSG00000020402.12	novel	2022	9	NA	NA	-19	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	1151.33076507676	7	42	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCATCCTCTTGTTGTTTTT	5387	False	NA	NA	False	NA	NA	NA	52251942	52280220	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276450_52279279
104711	chr9	+	2102	9	NNC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	7401.12513300343	820	7	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATACAGTTGTCCTGACTG	2459	False	NA	NA	False	NA	NA	NA	40712571	40716493	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716224
104715	chr6	+	2214	5	FSM	ENSMUSG00000042079.14	ENSMUST00000177918.8	538	5	-30	-1646	2	-6	multi-exon	FALSE	canonical	2	4	junction_4	2001.47200517519	6	38	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAATGACTGGCACAGCT	3736	False	NA	NA	False	NA	NA	NA	117883757	117902574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117896251_117896327_117900668
104716	chr6	+	2156	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	-15	6	-10	-6	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	4	31	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAATGACTGGCACAGCT	3719	False	NA	NA	False	NA	NA	NA	117883740	117902574	ont_cdna_mouse	iso_detect_de_novo_birol_ont	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
104717	SIRV5	+	877	10	ISM	SIRV5A	SIRV505	2029	16	-1	4542	-1	2851	5prime_fragment	FALSE	canonical	3	6602	junction_9	1812.35959013398	3	2	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTACCGTGACAGCCGC	NA	False	NA	NA	False	NA	NA	NA	999	6449	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327
104718	chr6	+	4361	11	ISM	ENSMUSG00000029833.18	ENSMUST00000120238.2	3258	19	45272	-2482	-2800	2118	3prime_fragment	FALSE	canonical	3	87	junction_1	147.494406673609	373	9	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTAAATGTCTTGAGTTT	NA	False	NA	NA	False	NA	NA	NA	37922693	37945349	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr6_+_37922725_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
104720	chr6	+	1875	4	NNC	ENSMUSG00000042079.14	novel	956	4	NA	NA	19	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	294.627825494395	8	23	2	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATGACTGGCACAGCTTA	NA	False	NA	NA	False	NA	NA	NA	117893960	117902576	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr6_+_117894033_117894430_117894560_117900808_117901986_117902079
104724	chr4	-	2276	10	ISM	ENSMUSG00000028656.15	ENSMUST00000069533.12	2620	13	16143	20	-5136	-20	3prime_fragment	FALSE	canonical	3	810	junction_4	63.3438587745051	1	63	1	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCAAACTTGTTTAGTTA	NA	False	NA	NA	False	NA	NA	NA	122763561	122752859	ont_cdna_mouse	iso_detect_de_novo_birol_ont	ISM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486
104725	chr4	+	2927	9	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-36449	768	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0.330718913883074	1	103	4	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	145136860	145178226	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr4_+_145136997_145138685_145138851_145140606_145140711_145151700_145151871_145160309_145160385_145173283_145173342_145174456_145174578_145176036_145177114_145177205
104729	chr2	+	1620	3	NNC	ENSMUSG00000054766.14	novel	844	3	NA	NA	136	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8858.5	2	25	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGGGTCATTCTCCTT	NA	False	NA	NA	False	NA	NA	NA	29960317	29962586	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr2_+_29960368_29960452_29960574_29961137
104730	chr7	-	5518	22	NNC	ENSMUSG00000005610.18	novel	7995	22	NA	NA	3	1203	intron_retention	FALSE	canonical	0	0	junction_1	1332.69071248636	13	53	2	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGGTTTTTTCTTCATTT	NA	False	NA	NA	False	NA	NA	NA	110682234	110669935	ont_cdna_mouse	iso_detect_de_novo_birol_ont	NNC_chr7_-_110671780_110671850_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110680172_110680713_110680841_110681991
